Prediction of potential genes in microbial genomes Time: Sun May 15 12:11:32 2011 Seq name: gi|284795548|gb|ADDQ01000001.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont0.1, whole genome shotgun sequence Length of sequence - 18361 bp Number of predicted genes - 14, with homology - 14 Number of transcription units - 5, operones - 3 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 485 - 544 4.4 1 1 Op 1 . + CDS 642 - 1346 209 ## PROTEIN SUPPORTED gi|163764767|ref|ZP_02171821.1| ribosomal protein L15 2 1 Op 2 12/0.000 + CDS 1360 - 2433 1117 ## COG0451 Nucleoside-diphosphate-sugar epimerases 3 1 Op 3 . + CDS 2420 - 3394 764 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 4 1 Op 4 . + CDS 3438 - 4865 761 ## EF2169 hypothetical protein 5 1 Op 5 1/0.000 + CDS 4920 - 5744 621 ## COG3475 LPS biosynthesis protein 6 1 Op 6 . + CDS 5784 - 6755 710 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 7 1 Op 7 . + CDS 6766 - 8187 817 ## EF2166 hypothetical protein + Prom 8206 - 8265 7.7 8 2 Tu 1 . + CDS 8289 - 9239 955 ## COG0451 Nucleoside-diphosphate-sugar epimerases + Term 9285 - 9340 10.9 + Prom 9284 - 9343 3.7 9 3 Op 1 . + CDS 9398 - 10144 681 ## COG0584 Glycerophosphoryl diester phosphodiesterase 10 3 Op 2 2/0.000 + CDS 10145 - 11074 847 ## COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase 11 3 Op 3 . + CDS 11078 - 12319 582 ## PROTEIN SUPPORTED gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 + Term 12333 - 12381 8.7 + Prom 12441 - 12500 7.6 12 4 Op 1 5/0.000 + CDS 12522 - 12905 437 ## COG0789 Predicted transcriptional regulators 13 4 Op 2 . + CDS 12948 - 14288 1405 ## COG0174 Glutamine synthetase + Term 14320 - 14371 15.2 + Prom 14468 - 14527 7.8 14 5 Tu 1 . + CDS 14588 - 18277 3634 ## COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit + Term 18286 - 18340 13.3 Predicted protein(s) >gi|284795548|gb|ADDQ01000001.1| GENE 1 642 - 1346 209 234 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764767|ref|ZP_02171821.1| ribosomal protein L15 [Bacillus selenitireducens MLS10] # 4 234 6 228 234 85 27 3e-16 MITALIIAGGVGKRMGQEIPKQFIMVEEKPIIIYTLESFQKHPLIDRILVVCKKGWEQTL DAYAKEYHIDKLQWIIPGGNSGQESINNGVNFLKEHSNPEDTIVIHDGIRPLVDELVLSD VIVKCQEYGNAVTSLPYNEQIFVKETEETTRQYINRETLRRVSTPQAYKFEKLTWAYEKA FRENIGISESSYTNTMMVDLGETLYFALGSDKNIKLTTQDDLQLFKGFLKMKEE >gi|284795548|gb|ADDQ01000001.1| GENE 2 1360 - 2433 1117 357 aa, chain + ## HITS:1 COG:SMb20239 KEGG:ns NR:ns ## COG: SMb20239 COG0451 # Protein_GI_number: 16263977 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Sinorhizobium meliloti # 28 356 11 327 346 132 29.0 1e-30 MLFTDDNYLSDVERVLEKTPDWTKVTNKSVFITGASGMIGTFLIDVLMYQNKTRNANISI WAMGRTLSRLEERFTSYLEDPLFHIVIGDVTEEIQVAEACDYVLHCASNTHPKSYASDPI GTIMTNIAGTQHILDYAVKANSEKVLFLSTVEIYGENRGDLDKFTEDYCGYIDCNTLRAG YPEGKRASESLCQAYIQKYGIDVVIPRISRTFGPTMLLSDSKASSQFIMNAVHKENIVLK SAGTQLYSYAYVADIVSALLFLLVKGQKGEAYNVSNEHCDITLRTFAETLANVAGTKVIH GEATAQEKQGFSKATKALLDNQKIYALGWRPLYDSMEEPLKHTIKILEGSGNSYAQN >gi|284795548|gb|ADDQ01000001.1| GENE 3 2420 - 3394 764 324 aa, chain + ## HITS:1 COG:SP1365 KEGG:ns NR:ns ## COG: SP1365 COG0463 # Protein_GI_number: 15901219 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Streptococcus pneumoniae TIGR4 # 4 322 6 324 328 220 40.0 3e-57 MPKISIIVPVYNVEKYLEKCVRSILAQTFTDFELILVDDGSPDSSGAMCDQFAEQDQRVK VIHKENGGLSDARNAGIEIATGEYLGFVDSDDYIADDMYELLYTNIVKEDADLSICGIYD VYEGKEPIVKSLIQGTFSREEALLLILQGNIISVHAVNKLYKRKLFADLRYPKGKYHEDS FIIVDLLSECQKVSIDSTQKYYYYHRMGSINTETFSDKQFEFIEAWEKNELKLKGKGAVI EEAAHQRVCFANFLVLDKILISNASKEKETKQIVRYLRKNFIFIMKNKVFTKSRKLSMIL LMFGLPFYKIPIKLKRKYIEKTID >gi|284795548|gb|ADDQ01000001.1| GENE 4 3438 - 4865 761 475 aa, chain + ## HITS:1 COG:no KEGG:EF2169 NR:ns ## KEGG: EF2169 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 9 475 1 467 467 843 99.0 0 MIINLSQQMQKIEKRIAIPYIVFFELVLICRMVSIYSTLPTKIDSLFTLIIMLLSGVYFI CHFLPIFIEKKQRRIEYWLIAFIGILFLTTFINHTYAFSENIKLIIWQCIFFFSVYEVGR SNDKSVFKAFEYVLLIVWTALVIVGLYLFFARISFSKPVESLYYGMRIGFFENRLYGVFV EPNYACTISLVCILVGVRNFINTNSKWLKVVCAMVIFLQFSYVALSGSRSGVIQLISMVI FGMFFTIWFFQKNTSKAVIKKVVQAVLVSFFCGAIVFGGLQLIEKGYIAAANSVNIEVPK VLDNKENEILGNKKITTKRPDVEGKDDISNSRFALWQSAIDLMKLNPIFGTSPKGFADIA KDKLPQSHIAKTAQTPHSFFFYLLAATGISGTIVFLIFLLSKMFNSAKLLFSVRIKNYMD FVLDNQIVLVILISGLLITEVILTRRFATVIFWLYLGKIQYRTDMENDLIRGNEQ >gi|284795548|gb|ADDQ01000001.1| GENE 5 4920 - 5744 621 274 aa, chain + ## HITS:1 COG:L15884 KEGG:ns NR:ns ## COG: L15884 COG3475 # Protein_GI_number: 15672196 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: LPS biosynthesis protein # Organism: Lactococcus lactis # 1 274 1 273 278 159 37.0 7e-39 MQKLTLNEVQAKAVEILVYIDNICRSNNLHYTLFYGTLIGVERHKGFIPWDDDIDIVMPR PDYELLIKILKNDSNYQLLSFETRKHFRYPFAKLVDPNTVAHSKQYFGGEDKDLGVFVDI FPIDGIPDTQKERNELRKITEQYRLNLMDTLGLSYARSFHLSKALIKLITRYPNHFKVKK VGNNQYWRDLYQTEAKKTPFGATKHCGYLEWIHIDWGVFPNEWFLEYEDVEFEGNKFMAI KNRKQFLTLRYGDYMEMPPVEERITHHPYDFYQK >gi|284795548|gb|ADDQ01000001.1| GENE 6 5784 - 6755 710 323 aa, chain + ## HITS:1 COG:SPy0787 KEGG:ns NR:ns ## COG: SPy0787 COG0463 # Protein_GI_number: 15674831 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Streptococcus pyogenes M1 GAS # 9 108 5 103 310 77 43.0 3e-14 MKQQYTATVVMATYNGEKNILEQLDSLKNQSKKIDEVLIWDDCSTDSTVKIIENFISENK LGETWHLKINTENLGWRKNFFNLLNAATKEIVFTCDQDDIWDASKIEVMCEAFANTDVKV LVSDYTELVEPGGLAEELKKIDSVKLPNQKAEQIIFNENNLFLRRPGCVYAIRKSFIANV NLYASEMENPVHDMAMWGSSLLSDGLYIVREELIRWRKHGQSSFKKEIDLAKRQNHFEER LNTLRRRLQRTKAAKNYLNNQPHVEEFEYKDKVLSNLIKELNMRVSLLERKKIIPILCAF FKYHHKFYFSTDIYHIMKYKIRK >gi|284795548|gb|ADDQ01000001.1| GENE 7 6766 - 8187 817 473 aa, chain + ## HITS:1 COG:no KEGG:EF2166 NR:ns ## KEGG: EF2166 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 473 1 473 473 781 99.0 0 MNSKAKMVAKNLYYTVAANFATLGISVLLNLFVPKLLGVTEYSYWQLYVFYSSYVGFLHL GWIDGIYLKIGGEEYENLDKRNLGSQFWYLAIFECCISAFVILWAYFFMPKEYQGIILIL TAIVSVITIAKTFILYVFQSTNRIKEYAQLSRNDRYLYVLFIAIYFALGGRDFYWLIIMD ILSKLIITVWGMFRVKDMLRVNMMSLKEVTPEIVDNINIGSKLMLSSIASMLIMGTIRFF VQQRWTIETFGKLSFTLSLSNMFLTFINAVGIVMFPLLRRTNKERLPSLFVTLRGVFVPL TYAILLLYVPVKFVLGMWLPEYSESLKFMGILFPIVIYEGRMSLLINTYLKTLRKEKTIL FVNVLTLALSLILSLFVIFVVGNLNLTVGLILVSLAFRCNLAEIFLCKDMNIKIGNSTAL ETLVTLLFIFSNLWFGGSIYSFISYGIVYIIYFLFIHKSFVNNAKNLKYLVKG >gi|284795548|gb|ADDQ01000001.1| GENE 8 8289 - 9239 955 316 aa, chain + ## HITS:1 COG:L12335 KEGG:ns NR:ns ## COG: L12335 COG0451 # Protein_GI_number: 15672193 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Lactococcus lactis # 3 315 6 313 313 383 63.0 1e-106 MRNFLITGGAGFIGSTLANYYSKDNQVVVIDDLSMGQTENLNTSENITFIEGSVIDQQLM EKVLQEYQFDYIFHLAAIASVADSVARPVETHQVNFESVLQLLELIRKYQKDLKRLVFAS SAAVYGDEPTLPKQEESVIRPLTPYAVDKFASEKYVLNYCHLYDVPTSAVRFFNVYGPNQ NPNSPYSGVISIVMDSYKRLLANQEVTFNIFGDGKQSRDFVFVEDVVQALNLVAHSDQSL GEVYNVGTGKATDLNELISSLNDIMKVALPVEYKEARAGDIKDSLADISKLRTIGYEPKY SIQSGLDKYVKYELKD >gi|284795548|gb|ADDQ01000001.1| GENE 9 9398 - 10144 681 248 aa, chain + ## HITS:1 COG:L1007 KEGG:ns NR:ns ## COG: L1007 COG0584 # Protein_GI_number: 15672046 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Lactococcus lactis # 2 247 34 281 281 221 45.0 9e-58 MTDIIAHRGSKGTHPENTCIAFREAVRVGAEGIELDVHLSKDGYLIVMHDETVDRTTDGH GEIQQLTLNELKQLDAGSWFQKNPSVQCVPTLEDVLNCLVEEQFNGFLNIELKTDIIHYE GIEKKVVQQMKQKNWPFRYLYSSFYFPSLVKLKKADPKTEIAFIYESAEDLSQAGPAFAL VDSLHPKMSWVLAHEKELIAIGKPLRPWTVNRMEEMENCFQLKLAGVHTDFPEEAKFARQ NWQEEGET >gi|284795548|gb|ADDQ01000001.1| GENE 10 10145 - 11074 847 309 aa, chain + ## HITS:1 COG:BH2366 KEGG:ns NR:ns ## COG: BH2366 COG0324 # Protein_GI_number: 15614929 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA delta(2)-isopentenylpyrophosphate transferase # Organism: Bacillus halodurans # 2 309 3 311 314 280 46.0 3e-75 MEKVLVIVGPTAVGKTALSIALAKKINGEIISGDSMQVYRSLDIGTAKVTETEKEGIPHY LIDCREVSETYSAADFQKEGRQKIKEITEKGKLPIIVGGTGLYIQSLLYDFQLGSREIDD SPEIRETYNLFAEEKGNQALWQLLQQKDPLAADSIHFNNRKKVIRALEVFDKTGYSILTP KEKPARLYDYYLLGLETDRALLYERINQRVDQMMTEGLLEEAKQMFQQPHAQAAQGIGYK EFFPYFSGEQSLEMAVETVKQQSRRYAKRQLTWFRNRMAAHWWDLVQQPTDLPKLEKEVA EWLQQKESE >gi|284795548|gb|ADDQ01000001.1| GENE 11 11078 - 12319 582 413 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 [Roseobacter sp. AzwK-3b] # 24 390 30 406 425 228 38 2e-59 MTTHEKVILVGVETEKNYQTFSASMEELANLTETANGEVVFVLTQKRPQVDRQTVIGKGK LEELIQLTDAYEADLVIFNHELTPRQNQLLSEALAVRVIDRVQLILDIFALRARSKEGKL QVELAQLDYLLPRLAGQGKQLSRLGGGIGTRGPGETKLESDRRHIRNKILGIRRELKEVT AHRERSRQKRQNSELFQIGLIGYTNAGKSTILNMLTTAGTYSEDQLFATLDPLTKKWQLP QGMEVTLTDTVGFIQDLPTQLIEAFQSTLEESRTMDLLLHVVDASAPDRLQHERTVQTLI KELALENIPCLTVYNKRDQVDSKEFVPTLFPNVLISTKISEDKERLVQAIRAQMMELLEP YQLEISPTDGQLLSELRRMTLMISEEYAENENRYIVKGFAKKESKWLAESEKE >gi|284795548|gb|ADDQ01000001.1| GENE 12 12522 - 12905 437 127 aa, chain + ## HITS:1 COG:SPy1878 KEGG:ns NR:ns ## COG: SPy1878 COG0789 # Protein_GI_number: 15675697 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 115 1 112 123 144 67.0 5e-35 MREKELRRSMSVFPIGTVMKLTDLTARQIRYYEEQGLIHPERSEGNRRMYSLNDIDVLLE IKDYLSDGLNMAGIKRVYEMKLEEQKNTAEATRPLTDADVRQILYDEILSQGGLTQQNPF QSNVPRL >gi|284795548|gb|ADDQ01000001.1| GENE 13 12948 - 14288 1405 446 aa, chain + ## HITS:1 COG:lin1337 KEGG:ns NR:ns ## COG: lin1337 COG0174 # Protein_GI_number: 16800405 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Listeria innocua # 7 446 5 444 444 714 75.0 0 MTRKAKTAEEIKHIAEEENVRFLRLMFTDIMGTIKNVEVPVSQLDKVLDNKMMFDGSSIE GFVRIEESDMYLYPDLSTWMIFPWESDHGKVARLICDIYNPDGTPFAGDPRGNLKRALAD MKELGFTSFNLGPEPEFFLFKLDENGEITTDLNDKGGYFDFAPTDLGENCRRDIVLELES LGFEVEASHHEVAPGQHEIDFKYADVVDACDNIQTFKLVVKTIARKHGLHATFMPKPLFG INGSGMHCNMSLFNEEGNVFYDESGEMGLSQTAYHFLGGLLKHARAYTAVCNPTVNSYKR LVPGYEAPVYVAWSGRNRSPLIRVPESRGLSTRLELRSVDPSANPYLTMAVLLQAGLDGI RNELTPPPAVDRNIYVMNEEERQHAQIEDLPSTLHNAIKELRKDQVMIDALGRHIFANFV EAKRMEWAAFRQTVSEWEREQYLELY >gi|284795548|gb|ADDQ01000001.1| GENE 14 14588 - 18277 3634 1229 aa, chain + ## HITS:1 COG:lin0824_1 KEGG:ns NR:ns ## COG: lin0824_1 COG0674 # Protein_GI_number: 16799898 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit # Organism: Listeria innocua # 1 416 1 414 414 613 70.0 1e-175 MRKMKTMDGNAAAAYISYAFTELAAIYPITPSSTMAELVDQWSAEGKKNIFGQPVKVVEM QSEAGAAGVVHGSLKTGALTTTYTASQGLLLMIPNMYKIAGELLPSVFHVASRALTTNAL NIFGDQGDVMAARQTGFAMLSESSVQEVMDLAPVAHLASIEASVPFMNFFDGFRTSHEIQ KVAVLDYEELAPLVNQEKLAEFRRRSMNPNHPSVSGMNQNPDIHFQQRETINPYYEKLPG IVQKYMTEINRLRGTNYDLVTYYGAEDAEEVIVTMGSVAQTIEQTVDYLQQQGRKVGFLN VHLYRPFPVETFLEKIPQSVKAIAVLDRTKEPGAGGEPLLLDVQSAMYEADIRPTIIGGR YGLGSKDVLPNQIVAVFDELMKERSAMKKRFTIGIDDDLTYTSLEVGKPLDLTNPKTYQA KFWGFGSDGTVGANKSAIKIIGDHTDKYAQGFFYYDSKKSGGLTVSHLRFGETPIRSTYL IEHSDFVACHTAAYLHTYDLVKGLKKGGTFLLNTIWNDEQLARFLPNQLKRYLAENEIQF YTINAVKLASEVGLGGRINTAMETAFFKLAEIMPFEQVLPILKEEALKSYGHKSMKVVEK NIQAIDKTVELLHQVPVPAEWRTLEVQPRKRSENVSDFVHEIVEPINRQEGNALSVATLA KNGMTDGRMPLGTAAVEKRGVALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTE APEGFIVRDLRGADGLKYRIQVSVKDCTGCGLCVEACPAKGKALVMKPYEEEKEQAMNWA FAMTLRQKENPAKPNTVLGSQFNKPLLEFSGACSGCGETPYVKLLTQMFGDRMLIANATG CSSIWGAAAGVTPYTTNEQGQGPAWSNSLLEDNAEFGYGMLLATQARRERLASKMTKAFS VASDSLRLLMEDWIAHLSESEGTQQRAAKLRAALLEEKTNQPLLEAIYDDQDLFVKPSQW MIGGDGWAYDIGYGGIDHVLASGADVNMLVLDNEVYSNTGGQTSKATPASAIAKFAASGK YASKKDLGMMAMTYENVYVAQIASGANQMQTIKAFEEAEKFPGPSIIIAYTPCITHGLAG GMSQTLKEAKDAVHSGYWSLYRYNPLLREKGKEPMTLDFKKPDFSLMKEFMRQQVRFASL ESSQPDTAELLFNKTINDAKRRFYNYARLAGQEEKIRAKLEKQSEPEINTPENEKPRVKK ERVVDPEAEARRAARRAERAAKRKQREQD Prediction of potential genes in microbial genomes Time: Sun May 15 12:12:07 2011 Seq name: gi|284795547|gb|ADDQ01000002.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont3.1, whole genome shotgun sequence Length of sequence - 79585 bp Number of predicted genes - 79, with homology - 76 Number of transcription units - 41, operones - 20 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 42 - 200 68 ## gi|256618321|ref|ZP_05475167.1| predicted protein + Term 240 - 285 10.3 - Term 227 - 273 12.1 2 2 Op 1 . - CDS 282 - 644 358 ## EF2893 hypothetical protein 3 2 Op 2 . - CDS 718 - 1104 187 ## PROTEIN SUPPORTED gi|86608329|ref|YP_477091.1| putative ribosomal protein S1 - Prom 1214 - 1273 6.5 + Prom 1090 - 1149 7.6 4 3 Tu 1 . + CDS 1270 - 2436 1009 ## COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities + Term 2440 - 2478 8.6 - Term 2427 - 2466 8.0 5 4 Tu 1 . - CDS 2470 - 2676 249 ## EF2896 hypothetical protein - Prom 2742 - 2801 6.9 - Term 2768 - 2828 13.0 6 5 Tu 1 . - CDS 2841 - 3431 841 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family - Prom 3460 - 3519 6.0 + Prom 3447 - 3506 5.1 7 6 Tu 1 . + CDS 3636 - 4646 924 ## COG0492 Thioredoxin reductase + Term 4676 - 4726 10.7 + Prom 4704 - 4763 5.8 8 7 Tu 1 . + CDS 4795 - 5757 971 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases + Term 5760 - 5826 15.3 - Term 5756 - 5806 5.1 9 8 Tu 1 . - CDS 5822 - 7375 1801 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases - Term 7395 - 7453 12.0 10 9 Op 1 . - CDS 7473 - 8753 1563 ## COG1653 ABC-type sugar transport system, periplasmic component 11 9 Op 2 . - CDS 8777 - 10066 1393 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 12 9 Op 3 38/0.000 - CDS 10050 - 10868 759 ## COG0395 ABC-type sugar transport system, permease component 13 9 Op 4 10/0.000 - CDS 10873 - 11748 830 ## COG1175 ABC-type sugar transport systems, permease components 14 9 Op 5 . - CDS 11748 - 12818 1029 ## COG3839 ABC-type sugar transport systems, ATPase components - Prom 12943 - 13002 8.5 + Prom 12816 - 12875 4.8 15 10 Tu 1 . + CDS 12928 - 13029 107 ## + Term 13120 - 13162 6.3 + Prom 13100 - 13159 6.0 16 11 Op 1 . + CDS 13183 - 13263 138 ## 17 11 Op 2 . + CDS 13285 - 13599 419 ## SPH_1425 conjugative transposon protein 18 11 Op 3 . + CDS 13618 - 14001 583 ## CD0497 conjugative transposon protein 19 11 Op 4 1/0.250 + CDS 14041 - 15435 724 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins + Term 15570 - 15615 3.0 + Prom 15560 - 15619 2.4 20 12 Op 1 . + CDS 15863 - 16816 484 ## COG2946 Putative phage replication protein RstA 21 12 Op 2 . + CDS 16859 - 17080 313 ## SPG_1238 Tn5251 hypothetical protein 22 13 Op 1 . + CDS 17197 - 17694 635 ## SPG_1237 Tn5251 hypothetical protein 23 13 Op 2 . + CDS 17708 - 18100 193 ## SPH_1415 conjugative transposon membrane protein 24 13 Op 3 . + CDS 18084 - 20531 1886 ## SPCG_0166 hypothetical protein 25 13 Op 4 . + CDS 20606 - 22711 982 ## HMPREF0868_1206 hypothetical protein 26 13 Op 5 . + CDS 22708 - 23709 545 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) 27 13 Op 6 . + CDS 23727 - 24641 544 ## SPCG_0169 hypothetical protein + Term 24651 - 24695 -0.7 + Prom 24735 - 24794 6.4 28 14 Tu 1 . + CDS 25018 - 26937 1192 ## COG0480 Translation elongation factors (GTPases) - Term 27199 - 27262 11.1 29 15 Tu 1 . - CDS 27283 - 27636 373 ## SPH_1408 transcriptional regulator, putative - Prom 27716 - 27775 7.9 + Prom 27859 - 27918 3.9 30 16 Op 1 . + CDS 28141 - 28563 271 ## SAG0919 Tn916 hypothetical protein 31 16 Op 2 . + CDS 28560 - 28790 168 ## SPH_1405 hypothetical protein + Term 28833 - 28861 -1.0 + Prom 29154 - 29213 3.9 32 17 Op 1 . + CDS 29251 - 29454 245 ## SPH_1403 hypothetical protein 33 17 Op 2 . + CDS 29536 - 30753 1007 ## COG0582 Integrase + Term 30984 - 31028 7.3 - Term 30979 - 31009 1.3 34 18 Tu 1 . - CDS 31018 - 31956 917 ## COG0463 Glycosyltransferases involved in cell wall biogenesis - Prom 31980 - 32039 8.2 - Term 32100 - 32136 -0.4 35 19 Op 1 . - CDS 32161 - 32472 577 ## COG4841 Uncharacterized protein conserved in bacteria 36 19 Op 2 1/0.250 - CDS 32545 - 33210 895 ## COG0569 K+ transport systems, NAD-binding component - Prom 33238 - 33297 8.2 - Term 33240 - 33305 17.6 37 20 Op 1 19/0.000 - CDS 33314 - 33946 807 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 38 20 Op 2 7/0.000 - CDS 33921 - 35024 877 ## COG4585 Signal transduction histidine kinase 39 20 Op 3 . - CDS 35021 - 35749 745 ## COG4758 Predicted membrane protein - Prom 35769 - 35828 8.4 - Term 35851 - 35888 2.0 40 21 Op 1 3/0.000 - CDS 35900 - 36379 768 ## COG0782 Transcription elongation factor - Prom 36471 - 36530 15.3 - Term 36577 - 36622 9.8 41 21 Op 2 . - CDS 36640 - 38025 1302 ## COG1559 Predicted periplasmic solute-binding protein - Prom 38059 - 38118 11.0 42 22 Tu 1 . - CDS 38233 - 38886 816 ## COG0546 Predicted phosphatases - Prom 38924 - 38983 2.2 - Term 38931 - 38976 2.5 43 23 Op 1 . - CDS 38985 - 40133 1342 ## COG0381 UDP-N-acetylglucosamine 2-epimerase 44 23 Op 2 . - CDS 40150 - 40641 484 ## COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily - Prom 40667 - 40726 3.3 - Term 40699 - 40733 4.0 45 24 Op 1 35/0.000 - CDS 40739 - 42508 217 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 46 24 Op 2 . - CDS 42505 - 44232 239 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P + Prom 44382 - 44441 4.1 47 25 Tu 1 . + CDS 44461 - 44847 369 ## COG2832 Uncharacterized protein conserved in bacteria + Term 45020 - 45056 -0.4 + Prom 45050 - 45109 7.4 48 26 Op 1 7/0.000 + CDS 45153 - 45365 226 ## COG5503 Uncharacterized conserved small protein 49 26 Op 2 . + CDS 45367 - 47052 1809 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily + Term 47066 - 47113 11.4 - Term 47106 - 47139 3.1 50 27 Tu 1 . - CDS 47158 - 47358 351 ## COG1278 Cold shock proteins - Prom 47425 - 47484 7.8 51 28 Op 1 . - CDS 47512 - 48210 631 ## COG2003 DNA repair proteins 52 28 Op 2 . - CDS 48266 - 48922 759 ## COG0637 Predicted phosphatase/phosphohexomutase 53 28 Op 3 . - CDS 48909 - 50231 1494 ## COG0285 Folylpolyglutamate synthase + Prom 50285 - 50344 6.1 54 29 Op 1 . + CDS 50480 - 53044 2309 ## COG4485 Predicted membrane protein 55 29 Op 2 . + CDS 53037 - 53636 467 ## COG0398 Uncharacterized conserved protein + Term 53643 - 53685 11.4 - Term 53626 - 53678 16.2 56 30 Tu 1 . - CDS 53683 - 56325 3265 ## COG0525 Valyl-tRNA synthetase - Prom 56363 - 56422 7.1 - Term 56488 - 56536 -0.6 57 31 Op 1 . - CDS 56718 - 57206 685 ## COG2077 Peroxiredoxin 58 31 Op 2 . - CDS 57270 - 57905 563 ## COG2344 AT-rich DNA-binding protein - Prom 57945 - 58004 4.5 - Term 57993 - 58042 11.5 59 32 Tu 1 . - CDS 58047 - 59261 1523 ## COG0301 Thiamine biosynthesis ATP pyrophosphatase - Prom 59306 - 59365 7.0 - Term 59349 - 59399 11.2 60 33 Op 1 . - CDS 59421 - 60734 1699 ## COG2252 Permeases 61 33 Op 2 . - CDS 60807 - 60875 93 ## 62 33 Op 3 1/0.250 - CDS 60915 - 61652 929 ## COG4221 Short-chain alcohol dehydrogenase of unknown specificity 63 33 Op 4 . - CDS 61652 - 62233 695 ## COG0110 Acetyltransferase (isoleucine patch superfamily) - Prom 62289 - 62348 5.8 + Prom 62248 - 62307 6.7 64 34 Tu 1 . + CDS 62341 - 63225 990 ## COG0583 Transcriptional regulator - Term 63194 - 63240 6.6 65 35 Op 1 1/0.250 - CDS 63245 - 64132 1067 ## COG4975 Putative glucose uptake permease 66 35 Op 2 6/0.000 - CDS 64153 - 64548 456 ## COG1869 ABC-type ribose transport system, auxiliary component 67 35 Op 3 13/0.000 - CDS 64564 - 65475 1134 ## COG0524 Sugar kinases, ribokinase family - Prom 65500 - 65559 6.7 68 35 Op 4 . - CDS 65573 - 66568 896 ## COG1609 Transcriptional regulators - Prom 66618 - 66677 4.2 + Prom 66488 - 66547 6.0 69 36 Tu 1 . + CDS 66780 - 67754 753 ## COG0657 Esterase/lipase + Term 67758 - 67810 19.0 - Term 67738 - 67805 24.9 70 37 Op 1 11/0.000 - CDS 67817 - 69184 1669 ## COG3037 Uncharacterized protein conserved in bacteria 71 37 Op 2 2/0.000 - CDS 69199 - 69498 181 ## PROTEIN SUPPORTED gi|148984431|ref|ZP_01817719.1| PTS system, IIB component, putative 72 37 Op 3 . - CDS 69500 - 71509 1643 ## COG3711 Transcriptional antiterminator - Prom 71610 - 71669 8.0 - Term 71620 - 71673 14.4 73 38 Op 1 . - CDS 71675 - 71899 263 ## EF2967 hypothetical protein 74 38 Op 2 . - CDS 71946 - 72344 244 ## EF2968 cell wall surface anchor family protein 75 38 Op 3 . - CDS 72328 - 73461 1256 ## EF2969 hypothetical protein - Term 73476 - 73513 3.1 76 38 Op 4 . - CDS 73549 - 74238 1079 ## EF2970 hypothetical protein - Prom 74468 - 74527 8.5 - Term 74590 - 74629 -0.7 77 39 Tu 1 . - CDS 74664 - 75635 1178 ## COG1834 N-Dimethylarginine dimethylaminohydrolase - Prom 75660 - 75719 7.5 - Term 75692 - 75737 9.1 78 40 Tu 1 . - CDS 75747 - 77162 1691 ## COG1785 Alkaline phosphatase - Prom 77192 - 77251 4.0 79 41 Tu 1 . - CDS 77280 - 79193 2006 ## COG1193 Mismatch repair ATPase (MutS family) Predicted protein(s) >gi|284795547|gb|ADDQ01000002.1| GENE 1 42 - 200 68 52 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256618321|ref|ZP_05475167.1| ## NR: gi|256618321|ref|ZP_05475167.1| predicted protein [Enterococcus faecalis ATCC 4200] # 1 52 2 53 53 62 100.0 6e-09 MFGQHFFSKKLKEVFNLFSFFSIISFLNFLNPNCLSKQFNSLLKIEQFESYI >gi|284795547|gb|ADDQ01000002.1| GENE 2 282 - 644 358 120 aa, chain - ## HITS:1 COG:no KEGG:EF2893 NR:ns ## KEGG: EF2893 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 120 1 120 120 224 100.0 6e-58 MSNKKVAGTIILNLNDGSKKFLMHPIGEAIEFAMAKVSDEMTGLASMLQWFKEEVQLDVT SISLVELTNAHINKENVPLFVFEMDEQALKNEMDKDYTWVAPAELKTIWSKYHIEGVPMF >gi|284795547|gb|ADDQ01000002.1| GENE 3 718 - 1104 187 128 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|86608329|ref|YP_477091.1| putative ribosomal protein S1 [Synechococcus sp. JA-2-3B'a(2-13)] # 1 106 186 291 304 76 34 4e-13 MKRGNLMKYKIGMVLSGTITGLQPYGAFVSLDEETQGLIHVSEVQAGFTKNIHGLLTVGQ KVTVQVIDVDEYSQKISLSLRTLEDKVHSVNHRRKKYFTDKNKKIGFATLDKELPEWIDE AMDKLLEK >gi|284795547|gb|ADDQ01000002.1| GENE 4 1270 - 2436 1009 388 aa, chain + ## HITS:1 COG:BS_patB KEGG:ns NR:ns ## COG: BS_patB COG1168 # Protein_GI_number: 16080196 # Func_class: E Amino acid transport and metabolism # Function: Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities # Organism: Bacillus subtilis # 3 388 2 387 387 352 42.0 7e-97 MFNFNETIDRRHTNCVKWDTVETSYHEKDLLPLWVADMDFKVHQPILDALSQVIEQGILG YAIAPNELYQAIQDWQRQHHQLIVEKEEILFNSGVVPSLATAVQAYTAPADSVMICDPVY PPFADVVKQNERRLVRHSLLEVNGHYEVDLVKMEQQIIEEKVKLLLFCNPHNPGGRVWTK EELLAIGRLCQKHQVTVVSDEIHQDLIFKPHTFTSFTVADEAFKEFTVTLTAATKTFNLA GIKNSMLFIPNEKLRQSFVSLQDKNHQGGINTFGYVGTAAAYQTGEEWLTALLDYLKENI DFALSFFREEMPSVRVMEPEGTYLLWLDFSSYSLTDRELRDTLIHKGKVVLNPGISFGPQ GSQHMRLNLACSKETLEEGLLRIKKAFN >gi|284795547|gb|ADDQ01000002.1| GENE 5 2470 - 2676 249 68 aa, chain - ## HITS:1 COG:no KEGG:EF2896 NR:ns ## KEGG: EF2896 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 68 1 68 68 118 100.0 8e-26 MLEKYRYPMALALFAVILPFIGTFFTYVDQQGIVHEPGFYTIIIGEILLLFSGIWFVRVY LAKRKRKN >gi|284795547|gb|ADDQ01000002.1| GENE 6 2841 - 3431 841 196 aa, chain - ## HITS:1 COG:lin2475 KEGG:ns NR:ns ## COG: lin2475 COG0652 # Protein_GI_number: 16801537 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Listeria innocua # 4 193 3 193 194 256 67.0 3e-68 MSKFPQLDLENAKGPKAVIKTNRGDITVQLFPEQAPKTVKNFVELAKKGYYDGVIFHRVI PDFMIQGGDPTGTGMGGESIYGEAFEDEFSRDVFNLRGALSMANAGPNTNGSQFFVVTNQ NVPAQMMSQLEDAGFPEEIIEAYKQGGTPWLDFRHTVFGHVVDGMDVVDEIGGVQRDAQD RPTFDVVMDTVEIIGE >gi|284795547|gb|ADDQ01000002.1| GENE 7 3636 - 4646 924 336 aa, chain + ## HITS:1 COG:lin2489 KEGG:ns NR:ns ## COG: lin2489 COG0492 # Protein_GI_number: 16801551 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Listeria innocua # 1 331 1 331 331 440 61.0 1e-123 MSDEKDIYDLTIIGGGPVGLFAAFYAGIRKAKTKIIDSLPQLGGQLTMLYPEKYIYDIPG FPAIKAGELIANLEKQMQPFQHDVCLEEEVTHLAQEADGLLRLDTTKGTHYSKTVIFAIG NGAFQPRRLAIENVEAFEGESIHYYVTDMKKFAGKKVAIAGGGDSAIDWALMLENVAEEV SIIHRRPQFRGHEHSVEQLEKSSVSIRTPYIISDILKENETFTGIQLTETKGDQTLDLPL DDLIINYGFTSSLTHLKEWGLDVSRNAINVHSDMSTNIPGVYAVGDICSYEGKVKLIATG FGEAPTAVNNALHYLRPDARRQPVHSTSLFENGVPK >gi|284795547|gb|ADDQ01000002.1| GENE 8 4795 - 5757 971 320 aa, chain + ## HITS:1 COG:BH0949 KEGG:ns NR:ns ## COG: BH0949 COG0111 # Protein_GI_number: 15613512 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Bacillus halodurans # 36 320 35 316 316 196 33.0 4e-50 MNQPIIYLNEVFNEEQLEQVKAVAPNYLVKTSTDHLSSAEEEAIEIMLGWHKEIGPRLLA SDTSHLKWIQLISAGADYMDFDKLREKGILLSNGSGIHSVSISEHVLGVLLAHTRGLQES IQQQMQHTWNQTAPSYQQLSGQKMLIVGTGQIGQQLAKFAKGLNLQVYGVNTSGHVTEGF IECYSQKNMSKIIHEMSIVVNILPLTETTKHLYNQALFEKMAPETIFVNVGRGASVATND LITALNNKTIAFAALDVFEEEPLPEDSPLWEMQNVLLTPHISGMTPKFKSKLLAIFIPNL NQFVTDQTLVKNQVSLKKGY >gi|284795547|gb|ADDQ01000002.1| GENE 9 5822 - 7375 1801 517 aa, chain - ## HITS:1 COG:L99798 KEGG:ns NR:ns ## COG: L99798 COG0737 # Protein_GI_number: 15672285 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Lactococcus lactis # 1 516 1 518 519 618 56.0 1e-177 MQIKILATSDMHGYIMPTSYSEKKMDLPFGTAKAATMLKKLRASAKGPVFQIENGDFIQG SPLSYYVRKAETHSVEAITKIINQMNYDVSVLGNHEFNYGLDYLKETIASYQQPVLAANI LGKDGQPYFGQPYVIIEKQGVKVAILGVTTQYIPHWEQPATVKDLTFKSVVETAAEYVPK LREEADLVVVAYHGGFEKDLETGEPTELLTGENEGYDLLEKVPGIDALVTGHQHREIATK LNGIPVIQPGFRGAFVGEITLEIEPMAKGYRVIGSDAAIHPVGNEQPDTEVLALTTALHD EVEEWLDQPVGNVEGDMTIQNPNAVRLKEHPYIEFINNVQMASSGTDISGTALFNNEGKG FNNQITMRDIITNYIYPNTLAVLRVTGQDLREALEQSATYFVLEKGQPIFNPKYVDPKPQ YYNYDMYEGIEYTLDLRQPFGERVTKLNYHGKAVQAEDVLEIVTNQYRAVGGGNYQMFQP EKIIREIQIDMTELIAEYLKKHPIIQASTNDNFKVIW >gi|284795547|gb|ADDQ01000002.1| GENE 10 7473 - 8753 1563 426 aa, chain - ## HITS:1 COG:TM0595 KEGG:ns NR:ns ## COG: TM0595 COG1653 # Protein_GI_number: 15643361 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Thermotoga maritima # 44 403 22 389 419 178 31.0 1e-44 MKFKTLATTVLATAAIFALGACGNGNGAKESNDIVKEVKEDTTITFWHAMNGVQEEALTK LTKDFMKENPKIKVELQNQSAYPDLQAKINSTLTSPKDLPTITQAYPGWLWNAAQDEMLV DLKPYMDDDTIGWKDAEPIREVLLDGAKIDGKQYGIPFNKSTEMLFYNADLLKEYGVEVP KTLEELKEASKTIYEKSNKEVVGAGFDSLNNYYAIGMKNKGVDFNKDLDLTSKDSQEVVD YYRDGIEAGYFRTAGSDKYLSGPFANKKVAMFVGSIAGAGFVQKDAEAGGYEYGVAPRPE KINLQQGTDIYMFDSATPEQRTAAFEFMKFLVTPDSQLYWAQQTGYMPILESVLHSDEYK NSKTTKVPAQLENAVKDLFAIPVEENADSAYNEMRTIMESIFASSNKDTKKLLKDATSQF EQAWNQ >gi|284795547|gb|ADDQ01000002.1| GENE 11 8777 - 10066 1393 429 aa, chain - ## HITS:1 COG:PH0466 KEGG:ns NR:ns ## COG: PH0466 COG0595 # Protein_GI_number: 14590378 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Pyrococcus horikoshii # 9 425 4 510 514 99 26.0 9e-21 MESKAKTTVTFHSGILTIGGTVIEVAYKDAHIFFDFGTEFRPELDLPDDHIETLINNRLV PELKDLYDPRLGYEYHGAEDKEYQHTAVFLSHAHLDHSRMINYLDPAVPLYTLKETKMIL NSLNRKGDFLIPSPFEEKNFTREMIGLNKNDVIKVGEISVEIVPVDHDAYGASALLIRTP DHFITYTGDLRLHGHNREETLAFCEKAKHTELLMMEGVSISFPEREPDPAQIAVVSEEDL VQHLVRLELENSNRQITFNGYPANVERFAKIIEKSPRTVVLEANMAALLLEVFGIEVRYY YAESGKIPELNPALEIPYDTLLKDKTDYLWQVVNQFDNLQEGSLYIHSDAQPLGDFDPQY RVFLDLLAKKDITFVRLACSGHAIPEDLDKIIALIEPQVLVPIHTLKPEKLENPYGERIL PERGEQIVL >gi|284795547|gb|ADDQ01000002.1| GENE 12 10050 - 10868 759 272 aa, chain - ## HITS:1 COG:TM0598 KEGG:ns NR:ns ## COG: TM0598 COG0395 # Protein_GI_number: 15643364 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Thermotoga maritima # 52 271 58 277 277 178 42.0 1e-44 MKKVLTIIAFVFLGILAVITLFPFVYMILAGLMSYSEATSMPPTMFPKQPQWQNYTEVFQ KAPFLRYFLNTVFVSGVTTIATVVTAVLASFALTSLKFRFKNVVIALMISLLMVPYESII FTNYQTIAQLGLLNTYSALIIPFLTSIFYIYYLNGYLKGIPDTFYKAAKIDGASDLEYIW RILVPMSKPALVTVGILTFISSWNSFLWPLLVTNEKKYRLLNNGLSAFATESGSDVHLQM AAATLTVIPILIIYLIFRKEIIRGVAKNGIKG >gi|284795547|gb|ADDQ01000002.1| GENE 13 10873 - 11748 830 291 aa, chain - ## HITS:1 COG:TM0596 KEGG:ns NR:ns ## COG: TM0596 COG1175 # Protein_GI_number: 15643362 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Thermotoga maritima # 45 288 169 414 420 172 42.0 5e-43 MKKYNPEIQPKAWLFLLPSLGIILLFSVYPLFRSLWMSFQKGSLINQRYAGLENYQRVLN DPIFYKALKNTALYAFAVVPIALIISLAIAWIIFEKVKHKSFFETIFFMPYVTSTIAIGI VFRYFFNGDYGIVNYVLGFFGIPSVNWLDNVQMSMPTLIIFGVWTSLAFNIIILLAGLRN IDEEHFKIAKMFGASDGEIFRRITFPQLVPTIAFLLTVNLIGAFKVYTQVYALFGGRAGI ANSATTAVYYIYDKFHIAGRPGIAMAATVILFVIILVVTFLQNKLLKKVGQ >gi|284795547|gb|ADDQ01000002.1| GENE 14 11748 - 12818 1029 356 aa, chain - ## HITS:1 COG:PH0022 KEGG:ns NR:ns ## COG: PH0022 COG3839 # Protein_GI_number: 14589983 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Pyrococcus horikoshii # 1 354 10 370 373 263 41.0 4e-70 MIEVIDLKKVFDNGFEALKSVNFTIEQGDLVCLLGPSGCGKSTILNLIAGLLHPSDGDIQ FRQQSVVKTAPKDRNIGFVFQNYALYPHMTVLENVMFPLTVGSKKVPKAEAQAIAEEYMK LTNIEELSHKKPGTLSGGQQQRVAITRALVQKPDVLLLDEPLSNLDARLRLKIREEIRRL VKEVGITTIFVTHDQEEALSISDKIILLNEGVIQQNDEPQNLYLEPNNLFVAQFIGNPII NLLSVEVKDGKMYHESFEIPLERFEQARFKMPMTDGKYTFASRPEDVVLTETGLFTTTTD LVELIGRERILRFTLGNEQVKSIVSVEEAIEEGDTLSFDFSYKKVFIFNEAGDRVY >gi|284795547|gb|ADDQ01000002.1| GENE 15 12928 - 13029 107 33 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYFLCKKQYKNLIIRINTGLITLYQGQNHSIYY >gi|284795547|gb|ADDQ01000002.1| GENE 16 13183 - 13263 138 26 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKTENQESKGRSPPFKTIKQTRFIKQ >gi|284795547|gb|ADDQ01000002.1| GENE 17 13285 - 13599 419 104 aa, chain + ## HITS:1 COG:no KEGG:SPH_1425 NR:ns ## KEGG: SPH_1425 # Name: not_defined # Def: conjugative transposon protein # Organism: S.pneumoniae_Hungary19A_6 # Pathway: not_defined # 1 104 1 104 104 197 97.0 8e-50 MELKFVIPNMEKTFGNLEFAGEDKVEQRRINGQLTVLSRSYNLYSDVQRADDIVVVLPAE AGEKHFGFEERVMLVNPRITAEGYKIGTRGFTNYLLHADDMIKE >gi|284795547|gb|ADDQ01000002.1| GENE 18 13618 - 14001 583 127 aa, chain + ## HITS:1 COG:no KEGG:CD0497 NR:ns ## KEGG: CD0497 # Name: orf22 # Def: conjugative transposon protein # Organism: C.difficile # Pathway: not_defined # 1 127 1 127 128 213 89.0 1e-54 MRLPNGIVLDKDATFGELKFSALRREVRIQNDDGTVSDEIKERTYDLKSKGQGRMIQVSI PASVPLKEFDYNAKVEIINPVADTVATATFRGADVDWYIKADDIVLTKDSSTFKNQPQPK KEPATDK >gi|284795547|gb|ADDQ01000002.1| GENE 19 14041 - 15435 724 464 aa, chain + ## HITS:1 COG:BS_ydcQ KEGG:ns NR:ns ## COG: BS_ydcQ COG1674 # Protein_GI_number: 16077553 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Bacillus subtilis # 7 458 13 461 480 428 50.0 1e-119 MKQFGIRGKRIRPSDKDLVFHFTVASLLPIFLLVIGLFHVKTIQQINWQDFNLSQVDKIH IPYLVISVSVAILVCLLVAFLFKRYRYDTVKQLYHRQKLAKMVLENKWYESEQVKTDGFF KDSSSRTKEKITYFPKIFYRLKDGLIQMRVEITLGKYQDQLLHLEKKLESGLYCELTDKE LKDSYVEYTLLYDTIASRISIDEVQAKDGKLRLMENVWWEYDKLPHMLIAGGTGGGKTYF ILTLIEALLYTDSKLYILDPKNADLADLGSVMGNVYYRKEDMLSCIDRFYDEMMARSEAM KEMENYKTGENYAYLGLPANFLIFDEYVAFMEMLGNKENTAVLNKLKQIVMLGRQAGFFL ILACQRPDAKYLGDGIRDQFNFRVALGRMSEMGYGMMFGSDVQKDFFLKQIKGRGYVDVG TSVISEFYTPLVPKGHDFLEEIKKLTNSRQSTQATCEAKVAGVD >gi|284795547|gb|ADDQ01000002.1| GENE 20 15863 - 16816 484 317 aa, chain + ## HITS:1 COG:BS_ydcR KEGG:ns NR:ns ## COG: BS_ydcR COG2946 # Protein_GI_number: 16077554 # Func_class: L Replication, recombination and repair # Function: Putative phage replication protein RstA # Organism: Bacillus subtilis # 2 302 43 340 352 224 42.0 2e-58 MDVQHVVEEILQLKLSYFLHEDYGFYSYSEHYALGDIFVLCSHEIDKGVLVELKGRGCRQ FESYLLAQQRSWYEFFMDALVAGGVMKRLDLAINDKTGILNIPTLTEKCLQEECISVFRS FKSYRSGELVRKDEKECMGNTLYIGSLQSEVYFCIYEKDYEQYKKNDIPIEDAEVKNRFE IRLKNERAYYAVRDLLVYDNPEHTAFKIINRYIRFVDKDDSKARSDWKLNEEWAWFIGNN RERLKLTTKPEPYSFQRTLNWLSHQVAPTLKVAITLDEINQTQVVKDILDHAKLTDRHKQ ILKQQSVKEQDVITTKK >gi|284795547|gb|ADDQ01000002.1| GENE 21 16859 - 17080 313 73 aa, chain + ## HITS:1 COG:no KEGG:SPG_1238 NR:ns ## KEGG: SPG_1238 # Name: not_defined # Def: Tn5251 hypothetical protein # Organism: S.pneumoniae_G54 # Pathway: not_defined # 1 73 1 73 73 103 100.0 2e-21 MNFGQNLYNWFLSNAQSLVLLAIVVIGLYLGFKREFSKLIGFLIIAIIAVGLVFNAAGVK DILLELFNRIIGA >gi|284795547|gb|ADDQ01000002.1| GENE 22 17197 - 17694 635 165 aa, chain + ## HITS:1 COG:no KEGG:SPG_1237 NR:ns ## KEGG: SPG_1237 # Name: not_defined # Def: Tn5251 hypothetical protein # Organism: S.pneumoniae_G54 # Pathway: not_defined # 1 165 1 165 165 280 94.0 1e-74 MDDMQVYIANLGKYNEGELVGAWFTFPIDFEEVKEKIGLNDEYEEYAIHDYELPFTVDEY TSIGELNRLWEMVSELPEELQSELSALLTHFSSIEELSEHQEDIIIHSDCDDMADVARYY IEETGVLGEVPTSLQNYIDYESYGRDLEISGTFITTNYGIFEIVY >gi|284795547|gb|ADDQ01000002.1| GENE 23 17708 - 18100 193 130 aa, chain + ## HITS:1 COG:no KEGG:SPH_1415 NR:ns ## KEGG: SPH_1415 # Name: not_defined # Def: conjugative transposon membrane protein # Organism: S.pneumoniae_Hungary19A_6 # Pathway: not_defined # 1 130 39 168 168 238 99.0 5e-62 MKKIRSYTSIWSVEKVLYSINDFRLPFPITFTQMTWFVVSLFAVMILGNLPPLSMIEGAF LKYFGIPVAFTWFMSTKTFDGKKPYGFLKSVIAYALRPKLTYAGKKVTLGRNQPQEAITT VRSEFYGISN >gi|284795547|gb|ADDQ01000002.1| GENE 24 18084 - 20531 1886 815 aa, chain + ## HITS:1 COG:no KEGG:SPCG_0166 NR:ns ## KEGG: SPCG_0166 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_CGSP14 # Pathway: not_defined # 1 815 18 832 832 1555 97.0 0 MAYPIKYIENNLVWNKDGECYAYYELIPYNYSFLSPEQKIQVHDSFRQLIAQNRDGKIHA LQISTESSIRSAQERSKEEVTGKLKVIAYDKIDQQTDALISMIGENQVDYRFFIGFKLLL NDQEFSMKSLTVEAKNALSDFVYDVNHKLMGDFVSMSNDEILRFQKMEKLLENKISRRFK IRRLDKDDFGYLIEHLYGQTGTAYEDYEYHLSKKKLDNETLIKYYDLIKPTRCLVEEKQR YLKIQQEDETVYVAYFTINSIVGELDFPSSEIFYYQQQQFTFPIDTSMNVEIVANRKALS TVRNKKKELKDLDNHAWQSDNETSSNVAEALESVNELENNLDQSKESMYKLSYVVRVSAN DLDELKRRCNEVKDFYDDLSVKLVRPFGDMLGLHEEFLPSSKRYMNDYIQYVTSDFLAGL GFGATQMLGENEGIYVGYSLDTGRNVYLKPALASQGVKGSVTNALASAFVGSLGGGKSFA NNLIVYYAVLYGAQAVIVDPKAERGRWKETLPEIAHEINIVNLTSDEKNKGLLDPYVIMK NPKDSESLAIDILTFLTGISSRDSDRFPVLRKAIRAVTNSEVRGLLKVIEELRVEGTQIS TSIADHIESFTDYDFAHLLFSDGYVEQSISLEKQLNIIQVADLVLPDKETSFEEYTTMEL LSVAMLIVISTFALDFIHTDRSIFKIVDLDEAWSFLQVAQGKTLSMKLVRAGRAMNAGVY FVTQNTDDLLDEKLKNNLGLKFAFRSTDLNEIKKTLAFFGVDPEDENNQKRLRDLENGQC LISDLYGRVGVIQFHPVFEELLHAFDTRPPVRKEV >gi|284795547|gb|ADDQ01000002.1| GENE 25 20606 - 22711 982 701 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0868_1206 NR:ns ## KEGG: HMPREF0868_1206 # Name: not_defined # Def: hypothetical protein # Organism: Clostridiales_BVAB3 # Pathway: not_defined # 1 701 25 725 725 1235 94.0 0 MAFTLVIAIFLLAMMGTVVQAAGLVDDTINVANEYSRYPLENYQLDFYVDNSWGWLPWNW SDGIGKQVMYGLYAITNFIWTISLYVSNATGYLVQEAYSLDFISATADSIGKNMQTLAGV TPSGLSTEGFYVGFLLLLILVLGVYVAYTGLIKRETTKAIHAIVNFVMVFILSASFIAYA PDYIKKINDFSSDISQASLSLGTKIVMPHSDSQGKDSVDLIRDSLFSIQVQQPWLLLQYN SSDIESIGADRVESLLSTSPDSNNGEDREKIVAEEIEDRNNVNMTITKTINRLGTVFFLF VFNIGISIFVFLLTGIMIFSQVLFIIYAMFLPVSFILSMIPSFDGMSKRAITKLFNTILT RAGITLIITTAFSISTMLYTLSAGYPFFLIAFLQIVTFAGIYFKLGDLMSMFSLQSNDSQ SVGSRVMRKPRMLMHAHMHRLQRKLGRSMTALGAGSAIASATGKQGQSGSSGRTQADHTR PDGQEKSTLGKRIGQTIGAVADTKDKIVDSAGNLKEQVKDIPTNARYAVYQGKSKAKENV RDLTSSISQTRADRASGRKEQQEQRRKTIAERRSEMEQVKQKKQPASSVHERPTTRQEQY HDEQTSKQSNIQTSYKESQQAKQERPAVKSDFSSPKVERQGNTVQEKTVQKPATSTTTAD RTSQRPITKERPSTVQRVPLQNTRSRPPIKTATIKKVGKKP >gi|284795547|gb|ADDQ01000002.1| GENE 26 22708 - 23709 545 333 aa, chain + ## HITS:1 COG:BS_yddH_2 KEGG:ns NR:ns ## COG: BS_yddH_2 COG0791 # Protein_GI_number: 16077564 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Bacillus subtilis # 210 332 2 124 124 144 59.0 2e-34 MKLKTLVIGGSGLFLMVFSLLLFVAILFSDEQDSGISNIHYGGVNVSAEVLAHKPMVEKY AKEYGVEEYVNILLAIIQVESGGTAEDVMQSSESLGLPPNSLSTEESIKQGVKYFSELLA SSERLSVDLESVIQSYNYGGGFLGYVANRGNKYTFELAQSFSKEYSGGEKVSYPNPIAIP INGGWRYNYGNMFYVQLVTQYLVTTEFDDDTVQAIMDEALKYEGWRYVYGGASPTTSFDC SGLTQWTYGKAGINLPRTAQQQYDVTQHIPLSEAQAGDLVFFHSTYNAGSYITHVGIYLG NNRMFHAGDPIGYADLTSPYWQQHLVGAGRIKQ >gi|284795547|gb|ADDQ01000002.1| GENE 27 23727 - 24641 544 304 aa, chain + ## HITS:1 COG:no KEGG:SPCG_0169 NR:ns ## KEGG: SPCG_0169 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_CGSP14 # Pathway: not_defined # 1 304 8 311 311 558 100.0 1e-157 MKFRKNQNKEKQIPKEKKPRVYYKVNPHKKVVIALWVLLGLSFSFAIFKHFTAIDTHTIH ETTIIEKEYVDTHHVENFVENFAKVYYSWEQSDKSIDNRMESLKGYLTDELQALNVDTVR KDIPVSSSVRGFQIWTVEPTGDNEFNVTYSVDQLITEGENTKTVHSAYIVSVYVDGSGNM VLVKNPTITNIPKKSSYKPKAIESEGTVDSITTNEINEFLTTFFKLYPTATASELSYYVN DGILKPIGKEYIFQELVNPIHNRKDNQVTVSLTVEYIDQQTKATQVSQFDLVLEKNGSNW KIIE >gi|284795547|gb|ADDQ01000002.1| GENE 28 25018 - 26937 1192 639 aa, chain + ## HITS:1 COG:CAC1448 KEGG:ns NR:ns ## COG: CAC1448 COG0480 # Protein_GI_number: 15894727 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Clostridium acetobutylicum # 2 638 3 647 652 426 37.0 1e-119 MKIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGI TSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG IPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIE GNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFYS STHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEKEKIKVTEMYTSING ELCKIDRAYSGEIVILQNEFLKLNSVLGDTKLLPQRKKIENPHPLLQTTVEPSKPEQREM LLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKYHVEIELKEPTVIY MERPLKNAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEG IRYGCEQGLYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYL SFKIYAPQEYLSRAYNDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNGR SVCLTELKGYHVTTGEPVCQPRRPNSRIDKVRYMFNKIT >gi|284795547|gb|ADDQ01000002.1| GENE 29 27283 - 27636 373 117 aa, chain - ## HITS:1 COG:no KEGG:SPH_1408 NR:ns ## KEGG: SPH_1408 # Name: not_defined # Def: transcriptional regulator, putative # Organism: S.pneumoniae_Hungary19A_6 # Pathway: not_defined # 1 117 1 117 117 216 100.0 3e-55 MRKKEDKYDFRAFGLAIKEARLKRGLTREQVGALIEIDPRYLTNIENKGQHPSIQVLYDL VSLLHVSVDEFFLPANNLVKSTRRLQIEKYMDSFTDKELSLMESLASGINEARNIED >gi|284795547|gb|ADDQ01000002.1| GENE 30 28141 - 28563 271 140 aa, chain + ## HITS:1 COG:no KEGG:SAG0919 NR:ns ## KEGG: SAG0919 # Name: not_defined # Def: Tn916 hypothetical protein # Organism: S.agalactiae # Pathway: not_defined # 1 140 18 157 157 251 100.0 7e-66 MKPSSFQTTIENQFDYICKRAMEDERKNYMLYLSRIAKREVSFSDVGDYLVSQFATTDNY STDFQIFTLNGLSVGVENDLLSEALRELPDKKREILLLFYFMDMSDSEIADLLKLNRSTV YRHRTSGLALIKKFMEEFEE >gi|284795547|gb|ADDQ01000002.1| GENE 31 28560 - 28790 168 76 aa, chain + ## HITS:1 COG:no KEGG:SPH_1405 NR:ns ## KEGG: SPH_1405 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_Hungary19A_6 # Pathway: not_defined # 1 76 1 76 76 142 100.0 4e-33 MKTQYPMIPFPLIVKATDGDTEAINQILHHYRGYITKRSLRLMKDEYGNQSMVVDEVLRG RMETRLITKILSFEIK >gi|284795547|gb|ADDQ01000002.1| GENE 32 29251 - 29454 245 67 aa, chain + ## HITS:1 COG:no KEGG:SPH_1403 NR:ns ## KEGG: SPH_1403 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_Hungary19A_6 # Pathway: not_defined # 1 67 1 67 67 111 100.0 6e-24 MKQTDIPIWERYTLTIEEASKYFRIGENKLRRLAEENKNANWLIMNGNRIQIKRKQFEKI IDTLDAI >gi|284795547|gb|ADDQ01000002.1| GENE 33 29536 - 30753 1007 405 aa, chain + ## HITS:1 COG:SA1835 KEGG:ns NR:ns ## COG: SA1835 COG0582 # Protein_GI_number: 15927603 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Staphylococcus aureus N315 # 181 383 167 367 390 75 27.0 1e-13 MSEKRRDNKGRILKTGESQRKDGRYLYKYIDSFGEPQFVYSWKLVATDRVPAGKRDCISL REKIAELQKDIHDGIDVVGKKMTLCQLYAKQNAQRPKVRKNTETGRKYLMDILKKDKLGV RSIDSIKPSDAKEWAIRMSENGYAYQTINNYKRSLKASFYIAIQDDCVRKNPFDFQLKAV LDDDTVPKTVLTEEQEEKLLAFAKADKTYSKNYDEILILLKTGLRISEFGGLTLPDLDFE NRLVNIDHQLLRDTEIGYYIETPKTKSGERQVPMVEEAYQAFKRVLANRKNDKRVEIDGY SDFLFLNRKNYPKVASDYNGMMKGLVKKYNKYNEDKLPHITPHSLRHTFCTNYANAGMNP KALQYIMGHANIAMTLNYYAHATFDSAMAEMNRLEKKKQQERLVA >gi|284795547|gb|ADDQ01000002.1| GENE 34 31018 - 31956 917 312 aa, chain - ## HITS:1 COG:SPy0510 KEGG:ns NR:ns ## COG: SPy0510 COG0463 # Protein_GI_number: 15674614 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Streptococcus pyogenes M1 GAS # 1 305 3 306 308 379 59.0 1e-105 MLSIVVPCYNEEAAIPLFFEEVEKISQQLSHSVEYIFVNDGSKDKTLAVLRQLYREHPEK VRYLSFSRNFGKEAGLYAGLKEATGDLVTVMDVDLQDPPELLPQMIEMIETSTDLDCVGT RRITRDGEPPIRSFFARMFYKLINRIAETEMVDGARDFRVMTRQMVDAILELSEYNRFSK GIFSWVGFKTEYIEFKNRERIAGETSWSFWSLLSYSIDGIVNFSETPLNIASYVGAFSCI GSALAMLVIIFRTLVNGDPTSGWPSMVCIVLFVGGLQLLCLGIIGKYIGKIFLETKKRPI YIVKESEKDSKK >gi|284795547|gb|ADDQ01000002.1| GENE 35 32161 - 32472 577 103 aa, chain - ## HITS:1 COG:BH2252 KEGG:ns NR:ns ## COG: BH2252 COG4841 # Protein_GI_number: 15614815 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 95 1 95 95 77 41.0 8e-15 MKLEVTPKAQQWFKDETGVQPETGIRFFGKIYGKTPVHDGFSIAMSVEAPDEPMIKENLD GITYFIEETDDWFFKGYDLIVDYDEKNDEPRYQFEANQEDLTK >gi|284795547|gb|ADDQ01000002.1| GENE 36 32545 - 33210 895 221 aa, chain - ## HITS:1 COG:lin1022 KEGG:ns NR:ns ## COG: lin1022 COG0569 # Protein_GI_number: 16800091 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transport systems, NAD-binding component # Organism: Listeria innocua # 1 219 1 218 219 269 62.0 3e-72 MKQNFAIIGLGRFGGSICQTLVEAGQEVLAIDSSEDRVNEYMNIATHAVVANAQDEMTLR SLGIRNFDHVVVAIGEDIQASILVTLMVKEMGVPNVLAKAVNEYHARVLDKIGADMVVHP ERDMGIRIAHKLVSRNILDYIELSSEFSLAEVRVTNPKFYNKTLAELNFRQRFGLTVVAI RRSKTEVIASPDASEIVRENDNLLVIGDTADVDLLDEKMNG >gi|284795547|gb|ADDQ01000002.1| GENE 37 33314 - 33946 807 210 aa, chain - ## HITS:1 COG:lin1021 KEGG:ns NR:ns ## COG: lin1021 COG2197 # Protein_GI_number: 16800090 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Listeria innocua # 1 210 1 210 212 299 79.0 3e-81 MIKVMLVDDHEMVRLGVSSYLSIQEDIEVVGEAENGKIGYEKALELRPDVILMDLVMEEM DGIDSTKAILKDWPEAKIIIVTSFIDDEKVYPAIEAGAAGYLLKTSTAHEIADAIRATYR GERVLEPEVTHKMMERLTKKQEPVLHEDLTNREHEILMLIAQGKSNQEIADELFITLKTV KTHVSNILAKLDVDDRTQAAIYAFQHGLAK >gi|284795547|gb|ADDQ01000002.1| GENE 38 33921 - 35024 877 367 aa, chain - ## HITS:1 COG:lin1020 KEGG:ns NR:ns ## COG: lin1020 COG4585 # Protein_GI_number: 16800089 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 6 362 4 352 352 291 50.0 2e-78 MTDRISRRMISLYASLSTFIVILITLFSYFHSIKQNRWLLELLQRKVFYLPLIVHIVLIS LLIGLLTFLLISLVQKGQYGRIEEKLRLLANGNYESPVLNKPTTSENQDHYLTEVEQDIW SIKNKLLEMSKELQLLNSRPQLMDGQTKEEILENERHRLARELHDSVSQQLFAAMMMLSA LNEQAQRTETPEPYRKQLAMVAEIINASQSEMRALLLHLRPISLEGKSLRKGIEQLLKEL QTKIKIELIWDVEDVHLNSSIEDHLFRIVQELLSNTLRHAKAKELEVYLHQVDKNVLLRI VDDGVGFDMKEQSNKAGSYGLNNIRERVVGMGGTVKIISFKGQGTSVEIKVPVIKEETAS DQSNVSG >gi|284795547|gb|ADDQ01000002.1| GENE 39 35021 - 35749 745 242 aa, chain - ## HITS:1 COG:lin1019 KEGG:ns NR:ns ## COG: lin1019 COG4758 # Protein_GI_number: 16800088 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 29 242 30 237 237 141 38.0 1e-33 MNNPWRFFIVAEALLFILALWQIVHNPGLAVLLTIGVLLVAYVSRKASKTHFNNFQFVLG VVFIVIGAMNSTAVWFMLIFGVLFIGLKGFEISGVDIAERAPWRKKQMIMVETAAKEPKN GKRFKRRWFANERIGNNIYEWDDINIDLISGDTIIDLGNTLLPKEDNIIIRKGFGRTRIL VPLGVAILLEHSTFYGTVRFEEEKYQLKNESLKIYSNDYDTNLRRLKIMTNTLVGDVEVI RV >gi|284795547|gb|ADDQ01000002.1| GENE 40 35900 - 36379 768 159 aa, chain - ## HITS:1 COG:lin1531 KEGG:ns NR:ns ## COG: lin1531 COG0782 # Protein_GI_number: 16800599 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Listeria innocua # 3 159 4 160 160 196 73.0 1e-50 MVEKVYPMTLEGKEKLEQELEELKTIKRKEIVERIKIARSFGDLSENSEYESAKDEQAFV EGRITTLENMIRFAEIIDNDGVDQDEVSIGKTVTFQELPDGEEEEYTIVGSAEADPFSGK ISNDSPIAQALIGKQLGDQVIIATPGGDMTVKITKVEAN >gi|284795547|gb|ADDQ01000002.1| GENE 41 36640 - 38025 1302 461 aa, chain - ## HITS:1 COG:SPy0348 KEGG:ns NR:ns ## COG: SPy0348 COG1559 # Protein_GI_number: 15674503 # Func_class: R General function prediction only # Function: Predicted periplasmic solute-binding protein # Organism: Streptococcus pyogenes M1 GAS # 48 457 102 521 524 317 43.0 4e-86 MANDNQNNQDPKSSLRDQVTGSLKGRNDGDQPDSSEKNDRSPQPSSDESQETASRTTQTR AGSRAARRRGKDKTTQTVEEPTPIETDEKPTNTKKQTRKKEDRLVGRIVLIVVSVLVLMM AIFGFTFYKYVDAGLQPLDKNNKKLVQVHIPEGSSNKQIAAVLEESNVIKSGMVFNYYVK FKNLTDFQAGYYQMSPSMTLDEIGEMLKEGGTPEPTKIADGKVTIPEGYDIDKIGEAIEK NTDFKKADFIALMKNEDFFNQMKAKYPDLLESAATAEGVRYRLEGYLFPATYDYYKKATL PEFVEQMIAKMNTVMEQYTPTIHAKNLTNQQVLTLASLVEKEGVKEADRKQIAQVFFNRL AADMPIQSDISILYALGEHKETVTYADLEVDSSYNLYKNTGYGPGPLDSPSEESIKAVLN PTPSDYLYFVADISTGKVYFSKTYEEHQVLVDQYVNNSSSE >gi|284795547|gb|ADDQ01000002.1| GENE 42 38233 - 38886 816 217 aa, chain - ## HITS:1 COG:CAC0418 KEGG:ns NR:ns ## COG: CAC0418 COG0546 # Protein_GI_number: 15893709 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Clostridium acetobutylicum # 1 215 1 214 216 184 45.0 9e-47 MYQTILFDLDGTITDSGSGIMRSILYATEQLGWPAPSEETLRSFIGPPLYESFLHMAPSA EAAQQAVGHYRAYYQRKGMFENHVYPGIPEVLTRLKEAGAKLYIATSKPEEFAKKIITHF DLDRYFTGIYGASMDGHRSKKADVIQYALTEAQLDPTKEAIIMVGDRNHDILGAQQNGLD SIGVLYGFGEETELQEAGATFLVQSPKDLGAILLQNS >gi|284795547|gb|ADDQ01000002.1| GENE 43 38985 - 40133 1342 382 aa, chain - ## HITS:1 COG:BS_yvyH KEGG:ns NR:ns ## COG: BS_yvyH COG0381 # Protein_GI_number: 16080619 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine 2-epimerase # Organism: Bacillus subtilis # 1 382 1 380 380 468 63.0 1e-131 MKKIKVMTVFGTRPEAIKMAPLIKVLEEQSQGFDSVVVVTAQHRQMLDQVLEDFQITPNH DLNIMKDGQTLTDITSRVLNLLTEVLVTEQPDIVLVHGDTTTSFAAALAAFYQQIPVGHV EAGLRTWQKYSPFPEEMNRQLVDVLTDIYFAPTTQSKDNLIKENHPEEHIYVTGNTAIDA MAYTVDAHYQNDLLEKIPTDQRIVLITMHRRENLGLPMANVFKAVRRLVMEHPEIEVIFP MHKNPKVREIVAEHLGELARVHLIEPLDVKDFQNFAAKSALILTDSGGVQEEAPSLGVPV LVLRDTTERPEGVAAGTLKLVGTDEQVVYQEAKTLLTDSDAYHAMAHAQNPYGDGQASRR IVEAIAYEMQQSDKKPDSFTAK >gi|284795547|gb|ADDQ01000002.1| GENE 44 40150 - 40641 484 163 aa, chain - ## HITS:1 COG:CC2643 KEGG:ns NR:ns ## COG: CC2643 COG0663 # Protein_GI_number: 16126878 # Func_class: R General function prediction only # Function: Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily # Organism: Caulobacter vibrioides # 4 154 18 168 176 161 52.0 4e-40 MKKEYFIAASADVYGNVQLAKDSNIWFQSVLRGDSNTITIGEGSNIQDGTIIHVDEDAPT IVGKYVTVGHQCMLHGCKIGDGALIGMGSTILNNAIIGENSLIGAGSLVTEGKIIPPNVL AFGRPAKVIRPLTAAEIASNHMNALHYVQRAEEFRQQKYPKLT >gi|284795547|gb|ADDQ01000002.1| GENE 45 40739 - 42508 217 589 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 347 566 132 351 398 88 29 1e-16 MKHAFSSMKRIGRYIKPYRVTFYLVILFTILTVAFNAALPYLTGLPTTEISRNIAAGESI NFDYVIQCLIWILVVGTGYCVAQFLSGFLMTNVVQQSMRDLRRDIEEKINRLPVSYFDKN QQGNILSRVTNDVDAVSNAMQQSFINIVSAVLGIVMAVVMMFLINPLMAIFSVIMIPLSL IISRTIVKISQKYFQGMQNSLGDLNGYVQENMTGFSVLKLYGREKETLEGFKQVNHRLNG FGFKASFISGLMLPLVQMTAYGTYIGVAVLGSYYVVAGVIVVGQLQAFIQYIWQISQPMG NITQLSAALQSASASTMRIFEILDEPEEELNEQDVPLPEPILGSVEFENVSFSYDPEKPL IRNLNFKVDAGQMVAIVGPTGAGKTTLINLLMRFYDVTEGAIKIDGIDTKKMNRSDVRSV FGMVLQDAWLYKGTIADNIRFGKLDATDYEVVDAAKTANVDHFIRTMPDGYEMEINSEGD NVSLGQKQLLTIARAVISDPKILILDEATSSVDTRLEALIQKAMDRVMEGRTSFVIAHRL STIREADLILVMKQGEIIEKGTHHELLEQGGFYEKLYNSQFAEEGDYEE >gi|284795547|gb|ADDQ01000002.1| GENE 46 42505 - 44232 239 575 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 333 557 132 354 398 96 29 3e-19 MKLMWRYTMRYKKLLFADFICVFGFILIELGLPTILARMIDKGIIPRDMDYIYQQGIWMV VITIIGVAMNILLGYFGARITTNIVRDIRDDLFEKIQTFSHSEYESIGVSSLITRTTNDA YQIMLFMGNILRLGFMTPVMFIASLYMVMRTSPSLGMYVLGALPFLLLAVVGIARLSEPL SKKQQKNLDGINGILRENLSGLRVIRAFVNEKFEESRFNKVNETYTKSSKSLFRLMAAAQ PGFFFLFNIVMVLIIWSGTVQISHGDLEVGNLIAFIEYIFHALFSFMLFASVFMMYPRAA VSASRIQEALDMEPAIREEEGVTETATKGYLEFKNVTFAYPGHAESPVIRNVSFKASPGE TVAFIGSTGSGKSTLIQLIPRFYDVSEGEILIDGVNVKEYKLSALRNKIGYIPQKALLFT GTIADNLRYGKEDATLEEMERAIDIAQATEFVSQKPQGYDEPLSEGGTNFSGGQKQRLAI ARAIIRNPEIYIFDDSFSALDYQTDANLRARLKKETTESTVLIVAQRVGTIMHADRIVVL NEGDVVGIGTHRELLETCPIYYDIAASQLSEEELA >gi|284795547|gb|ADDQ01000002.1| GENE 47 44461 - 44847 369 128 aa, chain + ## HITS:1 COG:SA0161 KEGG:ns NR:ns ## COG: SA0161 COG2832 # Protein_GI_number: 15925870 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 3 92 2 91 127 57 34.0 5e-09 MKKLFFIFLGSCTFALGTLGIFLPLLPTTGFYLLTAFFWMRSSDKLYNKFLASSYYQKYI QEAFFEKKITRKDKWKLFISMFLLFAIPCLIVRNTLMTTTLAIVYLAHVIGLSWYWRPKK KALELDQE >gi|284795547|gb|ADDQ01000002.1| GENE 48 45153 - 45365 226 70 aa, chain + ## HITS:1 COG:SPy1875 KEGG:ns NR:ns ## COG: SPy1875 COG5503 # Protein_GI_number: 15675694 # Func_class: S Function unknown # Function: Uncharacterized conserved small protein # Organism: Streptococcus pyogenes M1 GAS # 1 70 1 76 76 65 53.0 2e-11 MIYKVYYQETKIRNPKREDTKSLYMEADSDVIVRQLVEENTPYNIEYVQLLDEKHLAYEQ EHADFTLTEF >gi|284795547|gb|ADDQ01000002.1| GENE 49 45367 - 47052 1809 561 aa, chain + ## HITS:1 COG:SPy1876 KEGG:ns NR:ns ## COG: SPy1876 COG0595 # Protein_GI_number: 15675695 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Streptococcus pyogenes M1 GAS # 3 555 4 556 560 863 74.0 0 MKVNIKNNETGVFAIGGLGEIGKNTYGVQFQDEIIIIDAGIKFPEDDLLGIDYVIPDYSY IVQNLHKVKALVITHGHEDHIGGVPYLLRQANIPIYAGPLALALITNKLDEHGLLREAEL HEINEDTVIRFRKTAISFFRTTHSIPDALGVVVKTPSGNIVATGDFKFDFTPVGEPANLH RMAKLGEEGVLCLLSDSTNAEIPTFTKSEKTIGTSILKIFEKIDGRIIFASFASNIFRLQ QAADAAVKTGRKIAVFGRSMENAIVNGERLGYIKVPKGTFVDAAELNQLPANETMILCTG SQGEPMAALSRIANGTHRQISIQPGDTVVFSSSPIPGNTTSVNRLINLLSEAGAEVIHGK INNIHTSGHGGQEEQKLMLRLMKPKYFMPVHGEFRMLKIHASLAQDTGVPEENCFIMGNG DVLALTADSARPAGHFNANDVYVDGNGVGDIGNVVLRDRRILSEEGLVLAVATVDIKNKE IMAGPDILSRGFVYMRESGDMIHEGQRLLFNALREAMKDKNCTEAKLGEAMTTALQPFLF EQTERHPMILPMIMTATVSDQ >gi|284795547|gb|ADDQ01000002.1| GENE 50 47158 - 47358 351 66 aa, chain - ## HITS:1 COG:lin1401 KEGG:ns NR:ns ## COG: lin1401 COG1278 # Protein_GI_number: 16800469 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Listeria innocua # 1 65 1 65 66 97 84.0 4e-21 MEQGTVKWFNAEKGFGFISREDGSDVFVHFSAIQGDGFKTLEEGQAVTFDVEDSDRGPQA VNVEKN >gi|284795547|gb|ADDQ01000002.1| GENE 51 47512 - 48210 631 232 aa, chain - ## HITS:1 COG:BS_ysxA KEGG:ns NR:ns ## COG: BS_ysxA COG2003 # Protein_GI_number: 16079856 # Func_class: L Replication, recombination and repair # Function: DNA repair proteins # Organism: Bacillus subtilis # 6 229 8 231 231 229 47.0 2e-60 MQVSDLFIREMPSDCLPRERLLAIGEKALSNQELLAILLRTGSKEADVMTVAATLLKQFK QLSYLQQATLNELMAIRGIGQVKAIELRAAIELGCRIYQSSQIKFGKVTSSQQVAQRLLQ EMKGLQQEHLICIYLNTKNDIIQQKTIFKGSLNQSIAHPREIFREAVKYSSARILLAHNH PSGNPTPSPQDIQFTKRMEECGEMMGIQLLDHIIVGDSGYISLREENFFASE >gi|284795547|gb|ADDQ01000002.1| GENE 52 48266 - 48922 759 218 aa, chain - ## HITS:1 COG:CC2096 KEGG:ns NR:ns ## COG: CC2096 COG0637 # Protein_GI_number: 16126335 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Caulobacter vibrioides # 2 218 5 218 221 149 36.0 5e-36 MKKFDGVIFDMDGLLFDTELIYYTSTQKVADAMGLPYSKEVYLDYVGISDEEVQENYRRI YASYGHDTVEEFIRRSYDDTLQEFRSGNVPLKPGVVEFLDFLDDQKIPRLVASSNVRPAI EMLLSHAGIQDRFVGIVSAEDVKRAKPDPEIFQKARQLLGTEAPKTLIFEDSFHGVSAAH SAGIPVIMVPDLLQPTEVIQEKTLYVLESLHQAPHYLK >gi|284795547|gb|ADDQ01000002.1| GENE 53 48909 - 50231 1494 440 aa, chain - ## HITS:1 COG:L0177 KEGG:ns NR:ns ## COG: L0177 COG0285 # Protein_GI_number: 15673139 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Lactococcus lactis # 3 430 1 423 427 446 53.0 1e-125 MQLTIEEAIEWIHSRLPFGSRPGLDRINALLEKIDHPENKVPTIHIAGTNGKGSTVTYLR CLLEEMGLKVGTFTSPYIESFNERIAINGQPISDEQLITYVEKYQPIIKELDQITEVAGI TEFETLTGMALDYFVNEQVDIAVVEVGLGGLLDSTNVVKPLLTGITTIGKDHTEILGETI AEIAYQKAGIIKEKVPVVTGNICADALAVIEKVAQEKQSPIFRFGKEYQVEYLHPDAQWG EIFNFYGEMGKLTKIKVPLLGRHQVENAAVAIQLFDKYCQLQHLPFKERDITQGLAKAQW PARMERLSDEPLIVLDGAHNDHAVKRLVENLRKEFPQHTIHILFSALATKDVDEMIQDLK QVPNAHLYLTSFDYPKAIALTEMEKYEDDLTEIVSLWQFGLGEILEKMSTDDLLLVTGSL YFVSQVRELLLTIGGNDEEI >gi|284795547|gb|ADDQ01000002.1| GENE 54 50480 - 53044 2309 854 aa, chain + ## HITS:1 COG:SP2231 KEGG:ns NR:ns ## COG: SP2231 COG4485 # Protein_GI_number: 15902035 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 12 851 14 850 850 209 26.0 2e-53 MKNKSKLLWLGSFFLPFLLLLLVWMTLQLAPFGDNNLLVSDLGTQYMPFLSFLKRSFHEG ITTFYSFSNEIGESIVPLAAYYLLSPFNVLAFFFPYEQLPIAILWIITLKLALMGTTMFS YLKYTYQKVDGTTLLFSTSYSFCGFVTVYSQNFMWLDALILFPLILLGLQRLWDQRKWGL YSITLFLAIVTNYYMGYMICLFAVLYSIYWFFKKNTQAHAIRQFFKQSPLFILVSFLTGT ATSFLLLPAAEGMLYTKKADFDVSTFFLTPKFNTSFFSQLGLGSINYELRLDHLPTVFAG LFVTLLCVAYFQTKQIALKERIASAILLFILFLSFWLEAFNTVWHMFQSPAGFPYRNVFI FSFLLIVFAYEVWLKKVTIPWTAPIIFSLLLVIGYGSLYYGPQKNLLISINYLWLSLLFI WLIFFCLRLAHKKALRNYVVVALFLLVSTELTTNFWISFKHMPFGSQATFAQDYRKHSQL IDEKMASAPELYRMKQVIPSKETGFREINNGYNNPLLYGYAGVSSYTSTLTATTQDTLSA LGLYRKNDRRIAYVDNSQLTNLLLNVKYDFLPIEKPTSEKLLKTVGSTKIMENDEAIGMG FLAPTALTKLKLAKNNPLDAQEELLQTLVPTDKPYFKTASLINEPHHTNETIEATFKVNS TGDLHLYIPNLKWKKVTQLKVNQQVISTPIYIATNQLFNLGHFEKGTTVTLSLTAEQVVD LTNWQLQTLDQTAFNRAVDKLRQQALHVNLTKKGHLNGALNVPGNDTQLLYTSIPYDQDW QVKSSLQKEPLKTQRILGGFLAIEVPAGKQQLTFAYHPRMIYLGTAVSGTILLGTAGYLG FKKYRRKRQEATHD >gi|284795547|gb|ADDQ01000002.1| GENE 55 53037 - 53636 467 199 aa, chain + ## HITS:1 COG:SP1720 KEGG:ns NR:ns ## COG: SP1720 COG0398 # Protein_GI_number: 15901553 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 7 199 13 204 205 126 36.0 3e-29 MTNQKKFLNGLIRWLPLVGLVLFFGLILWGYSRGIFHSVASLQAFIKQFGNYAVLCFILL QIVQVIIPILPGGISSVAGMLMFGNLQGLLYSYLGLIIGEFIGFLLVRYYGRSFVKIILS PNKYKKFEEILDKNEHNVKKLLIFTMLVPFAPDDIVCLVAGITDISLKEFMKIVLLLKFW SVATYSYLMLYLFQLFGKL >gi|284795547|gb|ADDQ01000002.1| GENE 56 53683 - 56325 3265 880 aa, chain - ## HITS:1 COG:SPy1568 KEGG:ns NR:ns ## COG: SPy1568 COG0525 # Protein_GI_number: 15675460 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Valyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 7 880 4 880 882 1307 72.0 0 MSEEKNLPTKYQPTEIEAGRYQKWLDQDLFKPSGDKKAKPYSIVIPPPNVTGKLHLGHAW DTTLQDMIIRQKRMQGFDTLWLPGMDHAGIATQAKVEEKLAQQGISRYDLGREKFVDQVW EWKEEYASHIREQWAKMGLSLDSSRERFTLDEGLSEAVRKVFVSLYEKDLIYRGEYIINW DPKAKTALSDIEVIHKDIEGAFYHMSYPLSDGSGVVEIATTRPETMLGDTAIAVHPEDER YQELIGKTVVLPLVDKEIPIIADDYVDMEFGTGVVKITPAHDPNDFEVGNRHDLPRVNVM NEDGTMNELAGKYEGMDRFAARKAIVSDLKELGRLIKIETMNHSVGHSERTGVVVEPRLS TQWFVKMGPLAEKAIENQETEDAVEFYPPRFNQTFLRWMENIHDWVISRQLWWGHQIPAW YHKETGEMYVGMEEPADSENWVQDSDVLDTWFSSALWPFSTMGWPDEASEDYQRYFPTST LVTGYDIIAFWVSRMIFQSLEFTGERPFQNVLIHGLIRDEQGRKMSKSLGNGIDPMDVIE KYGADALRWFLSNGSAPGQDVRFSYEKMDASWNFINKIWNASRFVIMNVEGMTAADIDFS GEKTVADRWILTRLNETVARVTELFDRFEFGEAGRQLYNFIWDDFCDWYIEMSKEILYGD NEAAKQTTRSILVYTLDQILRLLHPIMPFVTEEIWEKIPHQGESLVVAEYPVVHEEFNDE AAARGMEVLKEVIRSVRNIRAEVNTPLSKPITLLIKTNDTEVEEFLTANTSYLERFCNPE ELVISREIEAPELAMSAVLTGAELFLPLAGLINIEEEIARLEKELDKWTKEVKRVQGKLS NERFVSNAPDEVVEAERAKEKDYLEKQEAVKERIAQLRSI >gi|284795547|gb|ADDQ01000002.1| GENE 57 56718 - 57206 685 162 aa, chain - ## HITS:1 COG:L101699 KEGG:ns NR:ns ## COG: L101699 COG2077 # Protein_GI_number: 15672286 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Lactococcus lactis # 1 160 3 160 160 143 49.0 2e-34 MNVTRKGHVLELTGEQPEVGTKAPVFSLKNLNNQEINLADYKGKTVLISVVPDIDTRVCS LQTKRFNQEAAKLDGVQIITISNNTVEEQANWCAAEGVEMEMLHDTEDSFGAAYGLYIPE MGRLARAIFVIDPEGTLVYEEIVLEVSSEPDYQQALEAAKKV >gi|284795547|gb|ADDQ01000002.1| GENE 58 57270 - 57905 563 211 aa, chain - ## HITS:1 COG:lin2178 KEGG:ns NR:ns ## COG: lin2178 COG2344 # Protein_GI_number: 16801243 # Func_class: R General function prediction only # Function: AT-rich DNA-binding protein # Organism: Listeria innocua # 1 203 8 210 215 218 52.0 9e-57 MPKATAKRLPVYLRYLKMLGDSGVKRIKSREFSEMIQIPSATIRRDFSHVGELGRSGYGY DVPYLIEVFSNILNTQEEKRIALIGCGNLGKALLKNNFRRNENLNIVCAFDNDSALVGTT INGLLVHDMSELEAFVRQEGVTVAISTVPSHHAQKAIDKIVQAGVTAILNFAPDRVSVPA NVSVQYIDLTTELQTLIYFNETFSLVNSPKQ >gi|284795547|gb|ADDQ01000002.1| GENE 59 58047 - 59261 1523 404 aa, chain - ## HITS:1 COG:SP0881 KEGG:ns NR:ns ## COG: SP0881 COG0301 # Protein_GI_number: 15900764 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis ATP pyrophosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 404 1 404 404 537 66.0 1e-152 MKYTEIMVRYGELSTKGKNRKTFIMQLAQNVKRALADFPALKIHADRDRMHILLNGEDSE EVIPKLSKVFGIQNFSPSIRIEKEMPAIRAMVQEVVREVYTPGKTFKITAKRSDHSFELD SNGLNQELGGAVIEAIPEIQVQMKKPDINLRIEIRKDAAYLSYETIRGAGGLPVGTSGRG MLMLSGGIDSPVAGYLAMKRGVEVEAVHFASPPYTSEQALQKAKDLAEKLVPYVGTIQFI EVPFTEIQEEIKRVVPQGYLMTITRRLMLRLTDAIREMRKGLVIINGESLGQVASQTLQS MVAINEVTSTPIIRPVVSMDKTEIIEIAEKIDTFELAIQPFEDCCTIFAPPQPKTRPRLD KAQDYEARLDLEGLMARALEGLKITEISAETAKDKQEDEFADFL >gi|284795547|gb|ADDQ01000002.1| GENE 60 59421 - 60734 1699 437 aa, chain - ## HITS:1 COG:BH0608 KEGG:ns NR:ns ## COG: BH0608 COG2252 # Protein_GI_number: 15613171 # Func_class: R General function prediction only # Function: Permeases # Organism: Bacillus halodurans # 5 435 1 433 434 416 59.0 1e-116 MKEKISSYFELEQLNTNMKREMLAGFTTFISMAYILFVNPTVLGASGMDEGAVFTATALA SALGCILMGVLAKYPIATAPALGINAFFAYSVSVGMGIPWQTTLAGVFVASLIFILITIF KLRELIIDAIPADLKFAISGGIGLFIAFLGLSQGGLIVANDATLVGLGPLNVGSTWVTIV GLVVTAILLVRRVPGGIFIGMAISTIVGLATGVIPMPDKIISSAPSLEPTFLVALGHVKD INTIQMWVVVLTFLLVTFFDTAGTLVGLANQAGFMKDNKMPRVGKALAADSTAMLAGSLL GTSPVGAYVESSAGIAVGGRSGITAITTGILFIFSLLFSPLLAVVTSQVTAPALIIVGVL MAQSLSKIKWNEMEIAIPSFLILLGMPLTYSISDGIALGFIFYPITMIAAKRGKEVSPIM YGLFFVFVGFMWILNAQ >gi|284795547|gb|ADDQ01000002.1| GENE 61 60807 - 60875 93 22 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIVRFLQNLEFDIYLFVGLLYD >gi|284795547|gb|ADDQ01000002.1| GENE 62 60915 - 61652 929 245 aa, chain - ## HITS:1 COG:lin0452 KEGG:ns NR:ns ## COG: lin0452 COG4221 # Protein_GI_number: 16799528 # Func_class: R General function prediction only # Function: Short-chain alcohol dehydrogenase of unknown specificity # Organism: Listeria innocua # 3 243 2 246 248 209 48.0 5e-54 MKSLSEKVIVIMGASSGIGEATARLLARKGAKLVIAARRQERLIAIKKELPEATILVQQA DVTKEEEVQRVIKLTMEKYGRIDVLFNNAGVMPTAPLIEAPKGEWRQMLDINIMGVLNGI AAVLPIMVEQKSGQIIATDSVAGHVVYPDSAVYCGTKFAVRAIMEGLRQEQRENNIKSTI ISPGAVQTELYQTISNRVVAETLHLEQLSWGLKAEDIAQAVVFAIDTPDRMSISEMVVRP TTQTI >gi|284795547|gb|ADDQ01000002.1| GENE 63 61652 - 62233 695 193 aa, chain - ## HITS:1 COG:lin0451 KEGG:ns NR:ns ## COG: lin0451 COG0110 # Protein_GI_number: 16799527 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Listeria innocua # 1 189 1 189 189 195 54.0 4e-50 MLTKNLQELIATGSIDKDEPLFQLIHQIQEENSRYLIELNQQAYTHNEVRNLLATIIQDK IDETVTILLPFYTDFGRNIHFGKNIFINRAAMFVDLGGIIIEDNVLIGPRVNLLSVNHPE LPMKRRGVLLAPITIKKFAWLGAGVTVLPGITIGENAIVAANATVTKDVPANAIVAGTPA KIIRWIQEDKEKI >gi|284795547|gb|ADDQ01000002.1| GENE 64 62341 - 63225 990 294 aa, chain + ## HITS:1 COG:lin0450 KEGG:ns NR:ns ## COG: lin0450 COG0583 # Protein_GI_number: 16799526 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 1 292 1 291 291 311 53.0 8e-85 MELRVIHYFLAVVQEKTISGAAKQLHVSQPTLSKQLKELEEELGVTLFIRGNRQIQLTPE GEYLAKQGQDILSLANKTVTNLSQNEFINGEITIGGGETKAMSFLANALQQITSQHSADI HLHLYSGNADDVIERLDKGLLDFGLIIEPAPKQKYSYLTLPVVDTWGLITVKDHPLATKN VITAADLKEEPLFISRQAKVPSQLSDWLEASLDQFRIVGTYNLLYNASLMVEAGLGSALS IDGILETKQTNLRFIPLYPALTAKISLIWRKNTVLSTAAALFLEQIKKSIQRPE >gi|284795547|gb|ADDQ01000002.1| GENE 65 63245 - 64132 1067 295 aa, chain - ## HITS:1 COG:SA0260 KEGG:ns NR:ns ## COG: SA0260 COG4975 # Protein_GI_number: 15925973 # Func_class: G Carbohydrate transport and metabolism # Function: Putative glucose uptake permease # Organism: Staphylococcus aureus N315 # 1 295 1 292 293 329 66.0 4e-90 MNATALLIGLGPLLGWGLFPTIASKIGGRPVNQILGTSLGTLIFAAVFSMINGLAFPAGM DLFFSILSGVGWACAQIITFKCFTMIGSSRAMPVTTAFQLLGASLWGVFFLGNWPGATAK LLGAFALVLIMIGAKMTVWSETESAESAGIMKKAVLLLAVGEIGYWAYSAAPQATAIDGM HAFLPQAIGMVIVAVIYSAVVTIKGGETSPFIEAVSYKQIFSGFFFAFAALTYLISAQPD MNGLATGFILSQTSVVLATLTGIWFLGQKKTAKEMTVTIIGLVLILAAATITVMI >gi|284795547|gb|ADDQ01000002.1| GENE 66 64153 - 64548 456 131 aa, chain - ## HITS:1 COG:SA0259 KEGG:ns NR:ns ## COG: SA0259 COG1869 # Protein_GI_number: 15925972 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type ribose transport system, auxiliary component # Organism: Staphylococcus aureus N315 # 1 131 1 134 134 120 55.0 5e-28 MKKTKVINSDISRVIAQMGHFDKLSIGDAGMPVPRTTEKIDLAVTNGVPSFMEVLNNVLE ELAVQRIYLAEEIKTENPDMLTAIKTRLPETPISFIPHTEMKQELNNCHAFIRTGEMTPY ANILLESNVVF >gi|284795547|gb|ADDQ01000002.1| GENE 67 64564 - 65475 1134 303 aa, chain - ## HITS:1 COG:SA0258 KEGG:ns NR:ns ## COG: SA0258 COG0524 # Protein_GI_number: 15925971 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Staphylococcus aureus N315 # 2 300 3 301 304 246 48.0 4e-65 MNAVTIIGSINLDTTLRVKEMPKPGETIHAIEHFTAGGGKGANQAVAAKRSGAETYFIGA VGNDGAGAMMTDLMSQDEINLTGVTTLEKTATGQAFIMVDNAGENSIMIYAGANNAFTPK QVQEHQEIIEKSDFVIAQFESAIDSTIAAFKIAKKAGVKTILNPAPALEQVPEELLNVTD MIVPNETETEILTGIKITDEASMRKAAEALHQLGIEAVIITVGSKGAFYDVNGRSGIVPA FKVKAVDTTAAGDTFIGALSSILEKDFSNLEEAIRYGNKASSLTVQRFGAQPSIPYQHEL ADK >gi|284795547|gb|ADDQ01000002.1| GENE 68 65573 - 66568 896 331 aa, chain - ## HITS:1 COG:SA0261 KEGG:ns NR:ns ## COG: SA0261 COG1609 # Protein_GI_number: 15925974 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 4 328 2 327 332 262 43.0 8e-70 MTNKKVTIKDVANDSGVSITTVSQILNGNGARFSGKTVEKVLAAKERLNYQPDYFAQRMV MKKSKTIGVIVPDITNPFFAQLIRGIESVLYKENFILMLCNAEQDVTREHEYLTELIRRS VDGFVIASSEISNQTINETLRAKKIPFIVLDQKKAEGFSDAVLTDDYRGGQLAAKHLQEQ RHEQVVVVMTPHAPVNIQQRLKGFCSVYTEKVQLIETELSKTGGYQAVPEILKTESTGIF AINDEIAFGLYRGLAEAGKKIPEDYSIIGYDNVDMCEYVSPPLTTIAQPVFQLGQTTATL LLERIHQPAKDWEEQTLPVQLIERFSTAPLK >gi|284795547|gb|ADDQ01000002.1| GENE 69 66780 - 67754 753 324 aa, chain + ## HITS:1 COG:mlr1247 KEGG:ns NR:ns ## COG: mlr1247 COG0657 # Protein_GI_number: 13471310 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Mesorhizobium loti # 92 322 65 295 317 87 27.0 3e-17 MKKKSIGLLLASAYLFHARSRQKSLKACLFEDSLRLSQIARLERNPKVTKAFYHWQRSLN EQVTLPKHLRHLFPLQEMTQFPTMYRMSNSVIAPTKKAVLYLHGGGFTLNLAYSQLDFSY KLIEDLSFATDYFIPVYPLAPNKSFADIYNHCYAAYQEILQHYDPEDVILLGDSAGGTLV LNVLQNLATDFPERLPKAAVLISPWLDGHLDIPVAKSYQKKDKMIGMNYLQLIAQEIDDT ANHSTLSLNCLSFDYQKFPPLFFVGGTHEVFCPSYHQFLKQLGPRPQDTCRLVPGMQHVF AMKQYLPEGRQARKQIAQFIQEQW >gi|284795547|gb|ADDQ01000002.1| GENE 70 67817 - 69184 1669 455 aa, chain - ## HITS:1 COG:SP2129 KEGG:ns NR:ns ## COG: SP2129 COG3037 # Protein_GI_number: 15901943 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 4 454 1 448 448 420 55.0 1e-117 METLLNLFVSIVSQPAILVSLIALLGLVLQKKKFSDVVQGTLKTFVGFLVLIGGAGLLAN SLMPFAEMFQTALNTQGVVPSNEAVVAIALQQYGTPTALIMLVGMVVNILLARFTRFKYI FLTGQAMMYVSCLTAVILVGAGFSVSLPMILLGGLFEGTLLTVTPALCQPFMKQITGNDK VAMGHTGNIGYAASGFIGKVFGNKEKSTEDIKIPKSFGFLRDSTISIMILMSIVYVILAL LAGTGYVEHELSNGENAIIFSLIQAGTFTAGFVVVLQGVRMVLGEIVPAFQGIAKKLVPN SKPALDVPIIFPYAPNAVLIGFFVSFIVGTISMLAMVGLNTTVIIPGVVGHFFCGAAAGV FGNSTGGRRGAILGAAFNGLLISWLPLFILPVLGDLQLASSTFADTDYLIPGLFLGKLGE AGPSLLVGGIIAFVVVVLLASAVLTMREKKVAEEN >gi|284795547|gb|ADDQ01000002.1| GENE 71 69199 - 69498 181 99 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148984431|ref|ZP_01817719.1| PTS system, IIB component, putative [Streptococcus pneumoniae SP3-BS71] # 1 96 2 93 94 74 39 2e-12 MKIFTVCQSGLGTSFMVQMNIQQILEEVGVDTDNFQIDHTDVGSASGDMADYFFVEKTLQ DALGSIPAEKIIPLNAIIDYDETKEKVLKVLDDNGIAHQ >gi|284795547|gb|ADDQ01000002.1| GENE 72 69500 - 71509 1643 669 aa, chain - ## HITS:1 COG:SPy1952_1 KEGG:ns NR:ns ## COG: SPy1952_1 COG3711 # Protein_GI_number: 15675752 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Streptococcus pyogenes M1 GAS # 8 491 12 500 532 184 26.0 5e-46 MNYKISYLLDEYAGQKIALSLAQQITDLSQRELVTQLSTIGGEVQQNTVSIPNLSANEWG KQLFQQRQVIYSETERQALIFLLTYSEIEELSVYHYQNFLDVSKGTILADIKKVRHQLAT ENIALSYERKRGFYLEGDEFRIRRFGKNWLARLLQQKSGTFALFCWLSQHQMSQYAKIRD GIQLAVQEAQLQLVPSRLDEISYFLAFSQKRLGKYKTVVWPENQLIQSLRAYPVSRRILS DLVGPVANIETESLFFTICLMTALQGELRDTKLEFLLDISGEIIRKMELLAVVQFEQPRE LLMNVYYHLVPAYFRINYGFYLPNVLIKDIRQSYRSLYHLCEQALAPLEKLTKRSIPSEE IGFFTILFGGEIFGQKNEQRQEKLKALIVCPSGISSSLILQSELRRLFPMIEFKETNAVR EIENVSEKSYDIIFSTVPIETAKKVYLTKPIMSSLEKNQLMHQVQSDWLLPGISMPDVKD ILDALKPYISLKKGVTEAQLYRVLHRKMNKILEKEEDLRPMLSELLTTETVQVLPEVADW RAGITEAAKPLLKNGSITEKYIDAMIQKVESFGPFIHICPDVALPHARPEDGVNQLGMSL LKIQKSVDLLEDPKHEIHLFICLAASDNETHLRALSSLTKILSKKESLHRLVAAETVPEI LSIIQEGEK >gi|284795547|gb|ADDQ01000002.1| GENE 73 71675 - 71899 263 74 aa, chain - ## HITS:1 COG:no KEGG:EF2967 NR:ns ## KEGG: EF2967 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 74 1 74 74 90 100.0 1e-17 MEITMWIWICAGLAVLCFALFLLFLVNSMNFVHLAKPKQSLVKQSMFSWLLLVMCGGWVA VAILLNIALQTQLT >gi|284795547|gb|ADDQ01000002.1| GENE 74 71946 - 72344 244 132 aa, chain - ## HITS:1 COG:no KEGG:EF2968 NR:ns ## KEGG: EF2968 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 11 132 1 122 122 178 87.0 5e-44 MTAKSKGSLLVTLGILLTVSIAILTASSESFAEEAGQTNIGVTFYGGKAPLKTKGGTKST EQPVTNKDKKTSQQQDKVSRKNTAKTNPTAAQTSLPRTGERNSTWLYSLGIACLLVVLTS FYYLNKKRKKEK >gi|284795547|gb|ADDQ01000002.1| GENE 75 72328 - 73461 1256 377 aa, chain - ## HITS:1 COG:no KEGG:EF2969 NR:ns ## KEGG: EF2969 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 377 1 377 377 701 99.0 0 MKTMRWLIVTVFICVMALSIPSAVQAEEADDNMNTKFTVKPNIPENQAKNTQSYYDLIVK PGQKQEVELSLINKTDEELTIDLNLANAVTNDNGLIVYNDFEKKPDSSLKVPLTTLIKLP EEHVKVPAKKTVTAKMTVEIPANGFQGLVLGGVYASLAEDEKEEKGKSTGLTSRYGFNVA IALRMSEDTPMYLAETLQLVKLVPTIALGNKSVQAVIQNPTSAIFPEVRLEGKVTKKGET KEYAKRILPSVRFAPNSTMNFHLDFGKEDVRPGTYIFEGKAVLKEDEQQVWPFKQEFTIS SQEAKKLNKEAVVKLVLPTWWNQAFYGLLVATIVSLILAIWRFTQQKATLKQQAYLQQEK QAALKNRQGVRDDDSEK >gi|284795547|gb|ADDQ01000002.1| GENE 76 73549 - 74238 1079 229 aa, chain - ## HITS:1 COG:no KEGG:EF2970 NR:ns ## KEGG: EF2970 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 229 1 229 229 283 97.0 5e-75 MKKKTLVTLFAGTAILGASIAPAAAHATTTGTTPANVEMTSGSLPGGTGDGDDGSTQEPG PGTNTNFDLLYVPTEFKFASTEVSSDLSAISLDATGTQTKRYGVGDVRGTQAGWSVTAGV AEMKNGTATLEGSITFAQTGAVAKYDETTTKYSRDVAAFAADPGSPEFAGTTIPVGGAAV SIATAAVGKGQGTWDSELSNVKLNITTPSSQITNGAYTGNVTWTLVAAP >gi|284795547|gb|ADDQ01000002.1| GENE 77 74664 - 75635 1178 323 aa, chain - ## HITS:1 COG:MA3652 KEGG:ns NR:ns ## COG: MA3652 COG1834 # Protein_GI_number: 20092452 # Func_class: E Amino acid transport and metabolism # Function: N-Dimethylarginine dimethylaminohydrolase # Organism: Methanosarcina acetivorans str.C2A # 2 323 4 332 334 155 30.0 1e-37 MKKMHVESEFAPLRSVVLAQSQFCLPDKFDEADTTFLTEENARLTQNNEGRDLADFAPEQ QVRWEKEKEVMQGVLESYGVEVFRPRLLTTYEKEHGKELGVGYSNFFSRDPFFTIGNLLI EGNLRFQHRRQEILPIRPIIQQWTQEAEGYYFAAPQPDISEGALSEAGPFIEGGDVLVLG KTIFVGYSGLASNLAGIQWLANMIGHFGYEVVPVRLHPHILHLDCALSLLREGLMIVCEE AFLDGLPAQLANWEKIHVTLQEAAYLVTNGLPLNEETYITDQSFTTLIPQIEAKGIKVEA IDYHVSRMLGGSFRCTTQALIRE >gi|284795547|gb|ADDQ01000002.1| GENE 78 75747 - 77162 1691 471 aa, chain - ## HITS:1 COG:BS_phoB KEGG:ns NR:ns ## COG: BS_phoB COG1785 # Protein_GI_number: 16077641 # Func_class: P Inorganic ion transport and metabolism # Function: Alkaline phosphatase # Organism: Bacillus subtilis # 35 452 27 450 462 471 64.0 1e-132 MKKRALLGVTLLIFTTLAGCTNLSEQKSGEKQTEVAEAKATESEKAPVKNVIFMIGDGMG NPYTTGYRYFKANHSDKRVPQTAFDTYLVGQQATYPEDEEENVTDSASAATAMAAGVKTY NNAIALDNDKSKTETVLERAKKVGKSTGLVATSEITHATPAAYGAHNVSRKNMAEIADDY FDDQIDGQHKVDVLLGGGSELFARKDRDLVKEFSQAGYGHVTDKKSLNENQDDKILGLFA PGGLPKMIDRTEEVPSLADMTEAALQRLDKNEKGFFLMVEGSQIDWAGHSNDIVGAMSEM QDFEAAFEKAIDFAKKDGETLVVTTADHSTGGLSLGKGDQYNWLTEPLHAAKRTPDFMAE EIIKNGNVEKTVTEYIDFQLSEAELKAVKTAAESKDVEKIAQALRKIFDERSNTGWTTGG HTGEDVNVYAYGPQAEAFLGQIDNTDQAKIIFGLVDGTGQKAEIKDKGIGK >gi|284795547|gb|ADDQ01000002.1| GENE 79 77280 - 79193 2006 637 aa, chain - ## HITS:1 COG:CAP0099 KEGG:ns NR:ns ## COG: CAP0099 COG1193 # Protein_GI_number: 15004802 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Clostridium acetobutylicum # 1 626 1 625 629 516 43.0 1e-146 MNHETIQKLQFTTILKEVQTRAIGEYSKERLAKMVPATRLETVQSRLTETTEARLIIDSG QHVPFMGLSQITRLLQQVKKGLILTPNELIEVADFLRSSQRIQKFFEKNQYQTPRLFSYS QHLADFRAIEEQIYTKIHNQKVATDASRQLRKIRRQINECQQEIETKVTKFLRNKNNQLY IQENMMVKKGEHYTVPIKASYKNKVSGTIIEQSNKGQTVFIEPVAISKLNEQLTLLKAEE TAEEYQILAELTGLINEQERLVDQAVDTMTTLDIIFARGKYSREIGGITPKVNKEERLRI VQGKHPLLLEHAVPLTFSLGAEYRGLVITGANAGGKTVVLKTVGLLTVMTQFGLQIPAQA GTEIPVLDEIFVDIGDQQNLENALSTFSGHMKNIAEMLRNVKRHTLVLLDEIGSGTEPNE GAGLAIAIMETMYQKGALVVATTHYGEIKRFAQEHDDFVPAAMAFDRETLTPKYQLKIGE VGDSQALWIARKMKMEPQLIEKAAHYIQRKEYPTNRSLFKPLKAKETTFATFVEETDRYQ KGDRVLLTETQQIGLVFTDEGEQEIQVFVNDKIENVPRRRLKLQAKAQDLYPQDYDLESL FTDFHERKKLKDIERGSKKAQKQLRKEAEKRAARRDK Prediction of potential genes in microbial genomes Time: Sun May 15 12:13:27 2011 Seq name: gi|284795546|gb|ADDQ01000003.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont4.1, whole genome shotgun sequence Length of sequence - 15990 bp Number of predicted genes - 16, with homology - 16 Number of transcription units - 7, operones - 4 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 68 - 127 7.7 1 1 Tu 1 . + CDS 163 - 636 669 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins + Term 644 - 704 19.3 - Term 695 - 738 13.0 2 2 Op 1 7/0.000 - CDS 748 - 1935 1507 ## COG0282 Acetate kinase 3 2 Op 2 . - CDS 1960 - 2931 1009 ## COG0827 Adenine-specific DNA methylase - Prom 3010 - 3069 8.2 - Term 3017 - 3065 0.3 4 3 Op 1 . - CDS 3096 - 3449 328 ## EF1985 hypothetical protein 5 3 Op 2 . - CDS 3449 - 3883 364 ## COG4940 Competence protein ComGF 6 3 Op 3 . - CDS 3873 - 4199 160 ## EF1987 hypothetical protein 7 3 Op 4 . - CDS 4165 - 4611 328 ## gi|194272060|ref|ZP_03056815.1| possible secreted protein 8 3 Op 5 6/0.000 - CDS 4608 - 4883 438 ## COG4537 Competence protein ComGC 9 3 Op 6 24/0.000 - CDS 4883 - 5929 806 ## COG1459 Type II secretory pathway, component PulF 10 3 Op 7 . - CDS 5886 - 6854 753 ## COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB - Prom 6997 - 7056 6.6 - Term 6900 - 6938 5.3 11 4 Tu 1 . - CDS 7095 - 8423 1343 ## COG0531 Amino acid transporters - Prom 8528 - 8587 7.5 - Term 8655 - 8708 8.0 12 5 Tu 1 . - CDS 8713 - 9786 981 ## COG0820 Predicted Fe-S-cluster redox enzyme - Prom 9817 - 9876 7.4 - Term 9853 - 9910 11.4 13 6 Op 1 36/0.000 - CDS 9911 - 11740 1612 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 14 6 Op 2 1/1.000 - CDS 11730 - 12479 998 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component - Prom 12503 - 12562 8.2 - Term 12534 - 12587 12.1 15 7 Op 1 3/0.000 - CDS 12597 - 13298 899 ## COG2188 Transcriptional regulators - Prom 13345 - 13404 13.3 - Term 13375 - 13421 9.5 16 7 Op 2 . - CDS 13429 - 15852 2645 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins - Prom 15873 - 15932 4.8 Predicted protein(s) >gi|284795546|gb|ADDQ01000003.1| GENE 1 163 - 636 669 157 aa, chain + ## HITS:1 COG:lin1615 KEGG:ns NR:ns ## COG: lin1615 COG0589 # Protein_GI_number: 16800683 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Listeria innocua # 1 147 1 147 152 161 57.0 4e-40 MLQQYQKIMIAIDGSDEADLAFKKAVNVAKRNDAELLLAHVVDTRSFQSVSSFDGALAEE AMSMAKETLDTYQQQAVDMGQTKVSSVLAYGSPKNIIAKELPKEYNIDLIMLGATGLNAV ERLFIGSVSESVIRNASCDVLVVRTDLDNKLPKNEEK >gi|284795546|gb|ADDQ01000003.1| GENE 2 748 - 1935 1507 395 aa, chain - ## HITS:1 COG:SPy0109 KEGG:ns NR:ns ## COG: SPy0109 COG0282 # Protein_GI_number: 15674332 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Streptococcus pyogenes M1 GAS # 1 395 1 395 398 507 65.0 1e-143 MSKTIAINAGSSSLKWQLYQMPNEEVIAKGIVERIGLKDSIFTIKYGEGQKYEVIVDIDN HEVAVKMLLDQLIDLNILGSYDEITGVGHRVVAGGEEFKDSVVITDEVLEKIEALSELAP LHNPANAMGIKAFKHILPEIISVAVFDTSFHTTMPEHNYLYSVPREYYEKFAARKYGAHG TSHRYVSQRAAEMLGRPIEDLKIITCHLGNGASITAVDGGKSVDTSMGFTPLAGVTMGTR SGDVDASLLPYLMTKLGLTDVQDMVDILNKKSGLLGLTNGLSSDMRDIQSNLDKPEVQTA YNIFIDRIRKYIGSYVTVMNGVDAIVFTAGIGENAVGVRKDIIDGMTWFGCEIDDDKNNV HGEEAVISTDDSKIKLLLVPTDEELMIARDVERLK >gi|284795546|gb|ADDQ01000003.1| GENE 3 1960 - 2931 1009 323 aa, chain - ## HITS:1 COG:lin1617 KEGG:ns NR:ns ## COG: lin1617 COG0827 # Protein_GI_number: 16800685 # Func_class: L Replication, recombination and repair # Function: Adenine-specific DNA methylase # Organism: Listeria innocua # 7 317 19 327 332 240 43.0 3e-63 MEQAIQLLQQSLDTSFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYHTIKKIDL APEDVRRLSQLLLLKGTRKEQLQANHQLTPDGIGFLFVYLVEQLTNKSEPLKILDPASGM GNLLLTVLLNLETAGYKVSGYGVDIDETLLAVSSVNNAWSQANIQLFHQDGLQDLLLDPV DLALSDLPIGYYPNDERAKGFAAAAEEGHSYAHHLLMEQAMKYVKPAGFGLFLIPTNILE TEQSEFFKNWLTKNVYLQGMIQLPDELFKSEQSRKSILLVQNKGADAEQVKEVLLAKLAS LKDINKVTEFFKQFEAWKASNLK >gi|284795546|gb|ADDQ01000003.1| GENE 4 3096 - 3449 328 117 aa, chain - ## HITS:1 COG:no KEGG:EF1985 NR:ns ## KEGG: EF1985 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 117 1 117 117 166 98.0 3e-40 MRQKYSGNLLFTAMAFVYLMSFLALQLLEERQLTQKFTQATQEYYAGKSIFHLFLADVKQ NRRKLKTEERLVYAQVTLDYTYKNEQLRITVLLNKSGRKYQYQERVSHQKKAETMLE >gi|284795546|gb|ADDQ01000003.1| GENE 5 3449 - 3883 364 144 aa, chain - ## HITS:1 COG:lin1379 KEGG:ns NR:ns ## COG: lin1379 COG4940 # Protein_GI_number: 16800447 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Competence protein ComGF # Organism: Listeria innocua # 4 140 14 148 154 60 28.0 1e-09 MVNKKYAGFTMLECLVALVVLSCMCQLFQLMIQQSFIGNQYLKNNDSKSWHIFLIQLEKE CQKLVFQTGSAQEISFLDSETNKTISIQIKEDKIIKRVNGKGYQPLLIGIKNGQFKNEGQ SFTLEVTFTSEKTFDSFFPIKGEF >gi|284795546|gb|ADDQ01000003.1| GENE 6 3873 - 4199 160 108 aa, chain - ## HITS:1 COG:no KEGG:EF1987 NR:ns ## KEGG: EF1987 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 108 48 155 155 185 98.0 6e-46 MANIRRKLTIYSGFILLESLVSFSIVCVIAGIFSLTITQLIQQNYQREQELTRTRLGYEA ILFLEQTGDLRFKELIYQGETYRFSLMENDGRRILKVTDSRGAILIGQ >gi|284795546|gb|ADDQ01000003.1| GENE 7 4165 - 4611 328 148 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|194272060|ref|ZP_03056815.1| ## NR: gi|194272060|ref|ZP_03056815.1| possible secreted protein [Enterococcus faecalis OG1RF] # 1 148 1 148 148 260 100.0 2e-68 MNKSAGFTLMETLASLTIVCFMTMLPTLAIHRWQETLKIEQFLATVEKQLRFAQQQAIVL EETQEVWFFEEQQSFSFPDKLNQSAGRTSLAVPEKMTVSGPSKLSFLHSSGNNGRLVKYI FTWTEKKQQLILQFQMGSGKYTKKINYL >gi|284795546|gb|ADDQ01000003.1| GENE 8 4608 - 4883 438 91 aa, chain - ## HITS:1 COG:SP2051 KEGG:ns NR:ns ## COG: SP2051 COG4537 # Protein_GI_number: 15901871 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Competence protein ComGC # Organism: Streptococcus pneumoniae TIGR4 # 3 86 9 92 108 84 63.0 7e-17 MKKKQKYAGFTLLEMLIVLLIISVLILLFVPNLAKHKETVDKKGNEAIVKIVESQIELYT LEKNKTPSLNELVNEGYITKEQLDKYTAEKQ >gi|284795546|gb|ADDQ01000003.1| GENE 9 4883 - 5929 806 348 aa, chain - ## HITS:1 COG:L0314 KEGG:ns NR:ns ## COG: L0314 COG1459 # Protein_GI_number: 15674104 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulF # Organism: Lactococcus lactis # 9 344 24 353 357 189 35.0 9e-48 MGLLQKKRIFKPSNKLTKKQQQLFLKLLADLLANGFNIQESFSFMKKSNALPQHSITFLV EGFSSGIALQALVEELGFSTMVSAQLSFATAHGDLVGTLQAISEHFFQTEKYRQQFYKII SYPLLLIVFLILVIVGIRQFLLPQLMENDANSYSKNIGILLIVYSPYILVTLVFVLSFSF FILNRYLKHQSAIQRAFVYLKLPIIRGLYREYVSAFFALEWGKLLAQGLEMKEVIDLMRH TTNYPLMKELAGAISEGLLVGETLHRQLAAYPFFTKALGLMIQQGEVKGKLGKELMVYSN VCFQGFFKKIERVITLVQPFIFIIIACLIIGVYGAMLLPIYGNMEGVL >gi|284795546|gb|ADDQ01000003.1| GENE 10 5886 - 6854 753 322 aa, chain - ## HITS:1 COG:SP2053 KEGG:ns NR:ns ## COG: SP2053 COG2804 # Protein_GI_number: 15901873 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB # Organism: Streptococcus pneumoniae TIGR4 # 5 271 2 266 313 249 50.0 4e-66 MTENVKKLAHQLIEWGVLHGAQDVYFLPNDTEIAISFRTGMQRTLYTQVSAEIGEKLIFH FKFIGGMDVGERRKAQLGATTYLIGETKQRLRLSSVGDFQNRESLVIRFLHRFGEQAEHF FFPHQLNEIEASCQKRGLYLFSGPVGSGKTTTMYRVAKKRSGEQQVIAIEDPVEIEEKRF LQLQTNEKIQLTYEALIKVCLRHHPDILIIGEIRDGETAQAVIRAALTGHTIFATIHARN LLGVQRRLIELGGPEHELAECLQGIIYQQILTTTINKEQVAGILYDYFFFKEAVIKSSWQ KNLRKAWAYGFITEKTYFQAIE >gi|284795546|gb|ADDQ01000003.1| GENE 11 7095 - 8423 1343 442 aa, chain - ## HITS:1 COG:SA1270 KEGG:ns NR:ns ## COG: SA1270 COG0531 # Protein_GI_number: 15927018 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 4 437 5 437 440 422 60.0 1e-118 MEKKQLKREITTFGALSTVMGTVIGAGVFFKAASVVGHAQSASLAIFAWVLGGALTICAG LTSAELATAIPETGGAVKYIEYTYGKLAGFLLGWAQSIIYYPANISALSIIFSTQLINLF HLSANLLIPIAILAGTSITVINLLGTKIASLVQSTTLVVKLIPIALISLVGLFTPGQVAV SLFPVETTANTGFLVAFSGALVATMFAYDGWLGVGNVAGEMKRPERDLPKAIIFGLLLIT LIYALINFVFLKTLPIEQIAGNLNAASDASVAIFGPIGGKIVTIGILISVYGALNGYTMT GIRIPYALALDNLMPFSRQFQKLSKRFVVPYVAGIFQLAVAIIMMFFGTFDLLTDMLVFV MWLFNLLIFLAVFILRKREPELKRPYKVPGYPIIPIIASLGGIFILVTTSITQPILALIG IGITLLGIPVYLVNKQKTKPKT >gi|284795546|gb|ADDQ01000003.1| GENE 12 8713 - 9786 981 357 aa, chain - ## HITS:1 COG:L184159 KEGG:ns NR:ns ## COG: L184159 COG0820 # Protein_GI_number: 15672161 # Func_class: R General function prediction only # Function: Predicted Fe-S-cluster redox enzyme # Organism: Lactococcus lactis # 3 355 10 363 365 556 75.0 1e-158 MQKESIYGLTREQLVDWFLAHGEKKFRATQVWEWLYTKRVASFSEMSNISKSLMTLLEEN FSLNPLKQVIVQEAQDGTVKYLFELPDKNMIETVLMRQEYGLSVCVTTQVGCNIGCTFCA SGLLKKQRDLTAGEIVAQIMWVQHYFDERGLDERVSHVVVMGIGEPFDNYANVMNFLRTI NDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAISLHAPNNEVRTSIMRINRSFPI EKLMAAIDEYIEKTNRRVTFEYIMLSQVNDRPEHAQQLADLLRNKKKLSYVNLIPYNPVS EHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDIDAACGQLRSKQMKKEKVKNQ >gi|284795546|gb|ADDQ01000003.1| GENE 13 9911 - 11740 1612 609 aa, chain - ## HITS:1 COG:BS_yxdM KEGG:ns NR:ns ## COG: BS_yxdM COG0577 # Protein_GI_number: 16081014 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Bacillus subtilis # 1 603 1 620 622 259 32.0 8e-69 MNFNQFVIRNTIRNKHLYLAYFLSTMFSVMIFFTFTGFVFHPALANGLNPKAQMGMTAAA IIIYGFSFLFVLYSMDVFIQSRKKEFGTLMIQGMSPKQLKKMIFIENLVIGFFATIFGSI LGVGFSQFILWISNLLMHLGLGFYLPVMPFIITVISFAVLFLVISFFIQFRLPKATLQEL LKAGEMGKGEIKSSKVKSFLAVLLLVVGYGIALVAKGQLVLMVMFPVIFLVILGTKFLFD QLSVSVIERLKRKPKIFWKKTNMVVLSDLAFRMKDNARSFFLVSVISTVAFAAIGTLYGV NEMIFKGISSVPYELTLSDSTNPENQEMKQFATKTFQEKNIQFDQIDYTMYKTSAGIQLI KTSEYNKLAKFIDEPTLIGEKVVNLSQKDAPSAASVDVKSVQLANDQVLNIDKTEETNVL PTFGGVVVIPDSTSTDGIKAETETIWQPKEGTDKETLIDAENIIGEKYPMLLGTAATVAG ITQFYTPVLFVGLFIGIVFFVSAGSFLYFRLYSDMNTDVEKFKMIYKLGLTKKELKKMIY QQVGILFFTPIVVSFIHGAVALKAMYAVLDQPMQLAGWQVLGVFLLIQVVYYLIARTFYF KKVYHLVKD >gi|284795546|gb|ADDQ01000003.1| GENE 14 11730 - 12479 998 249 aa, chain - ## HITS:1 COG:BS_yxdL KEGG:ns NR:ns ## COG: BS_yxdL COG1136 # Protein_GI_number: 16081015 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Bacillus subtilis # 1 249 4 252 257 278 54.0 5e-75 MLEVQNLKKVYGNEIKYEALKGINLTVQDGEFIGIMGPSGSGKSTLLNLLATIDSPTDGE ILLNGKNPNNLNQEQIAKFRRTELGFVFQSFNLMPTLTVEENIILPLTLDGEKVSVMKRQ LAELSERLGINHLLKKRIAEISGGQAQRVAVARAMIHHPQLLLADEPTGNLDTKSSKDVM GLLQQLNEEEAATILMVTHDPLAASYCKRIVFIKDGELIDEIVQNGNQKEFYDLIMVKLA EIEGVDNEF >gi|284795546|gb|ADDQ01000003.1| GENE 15 12597 - 13298 899 233 aa, chain - ## HITS:1 COG:ECs4225 KEGG:ns NR:ns ## COG: ECs4225 COG2188 # Protein_GI_number: 15833479 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 6 187 33 206 265 77 28.0 2e-14 MRRKSVLYLEVADQIKEDILSGKYPVGTFLPTETELEEMFNVSKITIRRAIEMLATEEFV EKKSGRGTTVLSNRPYNKLSKAGTFTEFLNESGQKVTKKVLQVENLTLSKEMPAYQFLGE EVVHLSRLYLIDEQPYIYFNYYLPAAMKDVSLTEYKEESLYRLMDRHAIEIYKFEDRFEV ATLTEAEQKMLQTTETTGLKRIRRSLSPTGRCVEYSEAIYNTKIHPYVIEYEA >gi|284795546|gb|ADDQ01000003.1| GENE 16 13429 - 15852 2645 807 aa, chain - ## HITS:1 COG:SPy0458 KEGG:ns NR:ns ## COG: SPy0458 COG1674 # Protein_GI_number: 15674577 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Streptococcus pyogenes M1 GAS # 4 792 3 798 801 681 50.0 0 MAQKRATNKKKSTTKKKTKKQQQQQERLNYMFLGLIFILFGVFGLFRLGFLGTLLANCLR LVVGNTFPFAAILLILYGLLVMIYGKDFPLKRGRPIFGAVLIYISVLLFFHAFMFRNVSG SQPDILGNTWEFLQSDLKANQVTQNVGGGMIGALLYQGTYFLVAQFGSYLIATLLLLAGI FLMSMWDFQQIVDHFQSIQDRLSHVSAKSQARQEEKEAKRAAKKEAKAAERQAKIEAAAQ QKLQERERMEQAAAERLTKTPVETHQPMVEEPAAPTPVQIDSFQQQNQAMPVPPIAATKP QREQEEEAADEAGVLEFEISEEAEDRDYQLPPTDLLDTIQATDQSGEYEKIEKNIGVLEQ TFKSFGVDAKVVKASLGPSVTKFEVQPAVGVKVSKIVNLTDDIALALAAKDVRMEAPIPG KSLIGIEVPNSAISTVSFRDIVEAQPSHPDKLLEVPLGRDISGMVQTADLSKMPHLLIAG STGSGKSVAINGIITGILMQAKPHEVKLMMIDPKMVELNVYNGIPHLLTPVVTNPRKAAQ ALQKVVQEMEFRYEKFAATGVRNITGYNQLIQQKNAEDGENRPILPFIVVIVDELADLMM VASNEVEDAIIRLAQMARAAGIHMILATQRPSVDVITGIIKANVPSRMAFAVSSGTDSRT IIDTNGAEKLLGRGDMLFLPMGENKPIRIQGAFISDQEVERVVAFVTDQQEAEYQESMMP TDEPTTSGGGEAPQDELFEEAKNLVVEMQTASISLLQRRFRIGYNRAARLVDELEAHGVI GPSEGSKPRKVFLQAESEEAAPETPEQ Prediction of potential genes in microbial genomes Time: Sun May 15 12:13:39 2011 Seq name: gi|284795545|gb|ADDQ01000004.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont5.1, whole genome shotgun sequence Length of sequence - 752 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 29 - 697 365 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|284795545|gb|ADDQ01000004.1| GENE 1 29 - 697 365 222 aa, chain + ## HITS:1 COG:L0470 KEGG:ns NR:ns ## COG: L0470 COG2801 # Protein_GI_number: 15672806 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 215 57 266 272 244 60.0 9e-65 MNKKKVQRLIQKLKLQVKAFTKKSRKYNSYKGTVGKIAKNLIRRRFKTSVPHQKITTDTT EFKYFEADNAGIFRQKKLYLDPFMDMYNSEILSYSLSTQPNGKTVMEGLKEAISQTNDCP YRRTFHSDQGWAYQMNVYIQTLKDNNIFQSMSRKGTCLDNSPMENFFSILKQEVYYGKIY QSQNELREAIENYIYYYNHHRIKEKLNWKSPVEFRQFNQKTA Prediction of potential genes in microbial genomes Time: Sun May 15 12:13:55 2011 Seq name: gi|284795544|gb|ADDQ01000005.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont6.1, whole genome shotgun sequence Length of sequence - 53393 bp Number of predicted genes - 51, with homology - 48 Number of transcription units - 24, operones - 11 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 36 - 1667 1809 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 1701 - 1760 7.6 + Prom 1821 - 1880 10.0 2 2 Tu 1 . + CDS 1920 - 4805 2734 ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain + Term 4810 - 4860 13.3 + Prom 4820 - 4879 8.2 3 3 Tu 1 . + CDS 5007 - 5519 569 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB + Term 5552 - 5589 -0.7 + Prom 5615 - 5674 6.2 4 4 Op 1 13/0.000 + CDS 5754 - 6746 1281 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 5 4 Op 2 13/0.000 + CDS 6781 - 7584 1063 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 6 4 Op 3 4/0.000 + CDS 7607 - 8518 1318 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID + Term 8557 - 8600 9.3 + Prom 8591 - 8650 6.0 7 4 Op 4 . + CDS 8680 - 9057 425 ## COG4687 Uncharacterized protein conserved in bacteria + Term 9065 - 9115 8.2 + Prom 9214 - 9273 8.0 8 5 Tu 1 . + CDS 9305 - 9832 680 ## COG3247 Uncharacterized conserved protein + Term 9847 - 9884 6.0 - Term 9834 - 9871 6.0 9 6 Tu 1 . - CDS 9879 - 10082 231 ## EF0026 hypothetical protein - Prom 10241 - 10300 9.4 + Prom 10198 - 10257 8.4 10 7 Op 1 3/0.000 + CDS 10280 - 11050 876 ## COG1737 Transcriptional regulators + Prom 11082 - 11141 4.7 11 7 Op 2 3/0.000 + CDS 11199 - 12767 1823 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 12 7 Op 3 . + CDS 12791 - 13996 930 ## COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities + Prom 14002 - 14061 6.0 13 7 Op 4 . + CDS 14096 - 14476 487 ## COG0251 Putative translation initiation inhibitor, yjgF family + Term 14492 - 14540 9.3 + Prom 14511 - 14570 3.8 14 8 Tu 1 . + CDS 14667 - 17258 2428 ## COG2898 Uncharacterized conserved protein + Term 17265 - 17325 10.2 + Prom 17687 - 17746 8.2 15 9 Op 1 . + CDS 17874 - 17936 120 ## 16 9 Op 2 . + CDS 17974 - 18261 410 ## gi|256960794|ref|ZP_05564965.1| predicted protein + Term 18277 - 18310 5.4 + Prom 19174 - 19233 12.3 17 10 Op 1 . + CDS 19283 - 19510 164 ## gi|293386712|ref|ZP_06631285.1| conserved hypothetical protein 18 10 Op 2 . + CDS 19519 - 20028 78 ## SEQ_0218 membrane protein 19 10 Op 3 . + CDS 20025 - 20651 502 ## COG1131 ABC-type multidrug transport system, ATPase component 20 10 Op 4 . + CDS 20632 - 20934 160 ## gi|256960791|ref|ZP_05564962.1| predicted protein + Term 20992 - 21037 1.5 + Prom 21089 - 21148 12.2 21 11 Tu 1 . + CDS 21212 - 21478 68 ## gi|256960790|ref|ZP_05564961.1| predicted protein + Prom 21506 - 21565 4.2 22 12 Op 1 24/0.000 + CDS 21586 - 22791 1216 ## COG0845 Membrane-fusion protein 23 12 Op 2 36/0.000 + CDS 22788 - 23471 304 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 24 12 Op 3 . + CDS 23468 - 24667 278 ## PROTEIN SUPPORTED gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 + Term 24840 - 24886 12.1 - Term 24898 - 24930 -0.7 25 13 Tu 1 . - CDS 24965 - 27580 2389 ## COG4485 Predicted membrane protein - Term 28037 - 28076 3.1 26 14 Op 1 . - CDS 28124 - 28633 612 ## COG4283 Uncharacterized conserved protein 27 14 Op 2 . - CDS 28641 - 29108 602 ## EF0035 hypothetical protein - Prom 29131 - 29190 3.7 + Prom 28873 - 28932 6.5 28 15 Tu 1 . + CDS 29164 - 30120 801 ## COG2378 Predicted transcriptional regulator + Term 30175 - 30219 8.3 - Term 30163 - 30208 12.5 29 16 Op 1 22/0.000 - CDS 30212 - 31459 1428 ## COG0014 Gamma-glutamyl phosphate reductase 30 16 Op 2 . - CDS 31452 - 32267 877 ## COG0263 Glutamate 5-kinase - Prom 32298 - 32357 8.5 + Prom 32244 - 32303 4.8 31 17 Tu 1 . + CDS 32383 - 32460 77 ## + Prom 32469 - 32528 4.3 32 18 Op 1 1/0.000 + CDS 32593 - 33072 584 ## COG0756 dUTPase 33 18 Op 2 . + CDS 33151 - 34521 1430 ## COG1066 Predicted ATP-dependent serine protease 34 18 Op 3 . + CDS 34521 - 34604 67 ## 35 18 Op 4 . + CDS 34622 - 35767 1367 ## COG4956 Integral membrane protein (PIN domain superfamily) 36 18 Op 5 3/0.000 + CDS 35786 - 36259 491 ## COG0245 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 37 18 Op 6 4/0.000 + CDS 36312 - 37769 1724 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases + Term 37963 - 38016 14.0 + Prom 37960 - 38019 8.2 38 19 Op 1 4/0.000 + CDS 38039 - 38578 619 ## COG1045 Serine acetyltransferase 39 19 Op 2 8/0.000 + CDS 38571 - 39983 1817 ## COG0215 Cysteinyl-tRNA synthetase 40 19 Op 3 7/0.000 + CDS 39980 - 40378 345 ## PROTEIN SUPPORTED gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 41 19 Op 4 6/0.000 + CDS 40368 - 41225 570 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 42 19 Op 5 5/0.000 + CDS 41240 - 41770 534 ## COG3688 Predicted RNA-binding protein containing a PIN domain 43 19 Op 6 . + CDS 41856 - 42422 642 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog + Prom 42437 - 42496 4.2 44 20 Op 1 2/0.000 + CDS 42537 - 42782 276 ## COG4466 Uncharacterized protein conserved in bacteria + Term 42795 - 42844 12.1 + Prom 42869 - 42928 4.1 45 20 Op 2 . + CDS 42963 - 43814 730 ## COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase + Term 43822 - 43885 16.3 + Prom 43869 - 43928 5.4 46 21 Op 1 25/0.000 + CDS 43981 - 44934 1023 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin 47 21 Op 2 42/0.000 + CDS 44960 - 45652 233 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein + Prom 45726 - 45785 4.8 48 21 Op 3 . + CDS 45814 - 46653 1091 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components + Term 46654 - 46689 3.7 + Prom 46712 - 46771 6.0 49 22 Tu 1 . + CDS 46797 - 47618 1094 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins + Term 47622 - 47678 14.3 + Prom 47710 - 47769 6.6 50 23 Tu 1 . + CDS 47829 - 49205 1825 ## COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) + Term 49220 - 49263 12.6 + Prom 49379 - 49438 11.7 51 24 Tu 1 . + CDS 49647 - 53391 4037 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases Predicted protein(s) >gi|284795544|gb|ADDQ01000005.1| GENE 1 36 - 1667 1809 543 aa, chain - ## HITS:1 COG:BS_ykpA KEGG:ns NR:ns ## COG: BS_ykpA COG0488 # Protein_GI_number: 16078507 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Bacillus subtilis # 1 540 1 539 540 797 71.0 0 MITVNDVSLQFPDRKLFEEVNIKFTPGNCYGLIGANGAGKSTFLKILSGEIQPTTGVVSM GPNERLATLKQNHFDYEDYTVLETVIMGHKRLYEVMKEKDAIYMKEDFSDEDGIRAAELE GEFAELDGWEAEPEAAVLLQGLNLPEELHDQKMSELTAGQKVKVLLAQSLFGKPDVLLLD EPTNGLDTRSINWLEEFLINFENTVIVVSHDRHFLNKVCTHMADLDFSKIKLYVGNYDFW LESSQLATKLQAQSNAKKEEQIKELQDFIARFSANASKSKQATSRKKMLDKITLDDIQPS SRRYPFVGFTPEREIGNDLLQVENVSVTIDGKKILDNISFNLTKDDKVAFIADSDITTTT LFKVIMGEITPDTGSVRWGVTTSQAYLPKDNSKDFEEPLTILDWLRQFAGKEEDDNTFLR SFLGRMLFSGEEVLKPVNVLSGGEKVRVMLSKLMLSKANVLVLDDPTNHLDLESITALND GLMAFTGSILFASHDHQFIQTLANRIIAVSDKGVIDRAETTYDEFLENPEIQKQMDVLFS SDY >gi|284795544|gb|ADDQ01000005.1| GENE 2 1920 - 4805 2734 961 aa, chain + ## HITS:1 COG:lin0778_1 KEGG:ns NR:ns ## COG: lin0778_1 COG1221 # Protein_GI_number: 16799852 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Listeria innocua # 1 469 1 461 464 408 45.0 1e-113 MKRIEKIYQYVKEQTKNLTPMTLTSDAGVTTQEISERLNIQRTNASKDLNQLVREGRLKK LSGRPVKYVAQVAFQHRPLTKPVKSYREKSMDHSTKTFIEPLVEPVVTTSKTPEVEDIFK KIIGSAGSMKTPVEQAKAAILYPPKGLNCLITGPTGSGKTYFAHAMFQFAKLNQIVAKEK EFVVFNCADYAHNPELLMSHLFGYVEGAFTGATKAKEGIIDEADGSILFLDEVHRLPPEG QEMIFYFMDHGVYARLGETVKSHHADVRIICATTENPTSSLLNTFVRRIPIIIQLPNFSD RPAKEKIDLLKVMVSMEAARIQRRISLSEDVVKALIGSVSYGNVGQLKSNVQLVTARGFL NQMEQEELMITMDELTDNIKEGIMQLASNREVLSELSKYLEPQLVVSPNESLVAIQSDAY ELPYNLYEIIGDKAALLKADGLDQELINNFITTDINVHLKSFYKDYGFTFDTENKLAEIV DQRIIDVTKKIYNFAAKRLSYSFQPNFIYAMSLHISSFLKRIQLGKDPKHPLNESIRNMV LDYPTEFETAKEIKNIIESSYQMEIPESESYYLAVLLISLRENPEAGRIGIVVAAHGNST ASSMVQVVSQLLNVDNLKAVDMPLDMPPKEALRKIVEAVGEVNEENGVLLLVDMGSLSTF SEEIVRQTGIDVRTVDMVTTPIVLEAARKTALIDTQLETLHESLKNFHGYADIRQSETKQ IIENWKTRAIIAICASGEGTARRMKELIEEAVLPQIDWHLEVIPLSIVNMKEVLPKIQED YEIIATTGITNPKIGVPYISMENFFSGEAEKIIQQLLAERKEEVMNKPLDEAAAKEICLK YMEQSFTFINGKKIIDLLWSFAKNIQTQLAMPEEYTFYINLIMHTSGMLERILRNDTLTV SEKELGRLVQEPIYPVIVASIETMEEALNMDVPAEEVYFIAQLVKNAQCIEDKITEIDTL D >gi|284795544|gb|ADDQ01000005.1| GENE 3 5007 - 5519 569 170 aa, chain + ## HITS:1 COG:lin0776 KEGG:ns NR:ns ## COG: lin0776 COG3444 # Protein_GI_number: 16799850 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Listeria innocua # 3 163 1 161 161 190 63.0 1e-48 MVMDIRLARIDDRLIHGQVATVWAKLTNINRILVVSDSVAHDNLRKALLVQAAPPGVKVN VITVQKMIDVYPDPRFDSFRAMLLFTNPLDVKRVVEGGVQLTSVNIGGMSFSTGKRMITN AVAVDANDLKAFLFLNEQGIELEIRKVAADSQVNLMDLLKKERSKENNAS >gi|284795544|gb|ADDQ01000005.1| GENE 4 5754 - 6746 1281 330 aa, chain + ## HITS:1 COG:lin0143_2 KEGG:ns NR:ns ## COG: lin0143_2 COG3444 # Protein_GI_number: 16799220 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Listeria innocua # 166 327 1 162 165 243 84.0 3e-64 MVGIILASHGEFAEGILQSGAMIFGEQENVKAVTLMPSEGPDDVKAKMQEAIASFDNQDE VLFLVDLWGGTPFNQANSLLEDHKDKWAIVAGMNLPMVIEAYASRFSMESAQEIATHILE TAKDGVKVKPEELQPAEAPKAAATEDAQPKGSLPPGTVVGDGKIKFVLARIDSRLLHGQV ATAWTKATQPNRIIVVSDAVAKDDLRKKLIEQAAPPGVKANVIPISKMIEVAKDPRFGNT KALLLFENPEDVLKVVEGGVEIPEVNVGSMAHSVGKVVVSKVLSMGQEDVDTFDELKAKG IKFDVRKVPNDSKANMDEILKKAKNELANA >gi|284795544|gb|ADDQ01000005.1| GENE 5 6781 - 7584 1063 267 aa, chain + ## HITS:1 COG:lin0144 KEGG:ns NR:ns ## COG: lin0144 COG3715 # Protein_GI_number: 16799221 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Listeria innocua # 1 267 1 268 268 332 86.0 4e-91 MSVISIILVLLVAFLAGMEGILDEFQFHQPLVACTLIGLVTGNLEAGIVLGGTLQMIALG WANIGAAVAPDAALASVASAIILVLGGQGVKGVPSAIAIAVPLAVAGLFLTMIVRTVAVP IVHMMDAAAEKGNIKQVEMLHIFAVCLQGIRIAIPAGALLFIPADTVRNFLESMPAWLTD GMAIGGGMVVAVGYALVINMMATKEVWPFFIIGFVVAAISQLTLIALGALGVALALIYLN LSKMGGSSNSNGGGNSGDPLGDILNDY >gi|284795544|gb|ADDQ01000005.1| GENE 6 7607 - 8518 1318 303 aa, chain + ## HITS:1 COG:lin0145 KEGG:ns NR:ns ## COG: lin0145 COG3716 # Protein_GI_number: 16799222 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Listeria innocua # 1 303 1 303 303 502 86.0 1e-142 MAEKIQLTKKDRLAVAWRSTFIQGSWNYERMQNGGWAFSMIPAIKKLYKTKEERSAALKR HLEFFNTHPYIASPILGVTLALEEERANGAPVDDVAIQGVKVGMMGPLAGVGDPVFWFTV RPMLGALGASLAMGGNILGPILFFVAWNLIRWSFMWYTQEFGYKAGSKITDDLSGGLLQD ITKGASILGMFVLAALVQRWVSIKFLPIVSQVKLDKGAYIEWDKLPAGGEGMHKAFEQVN QGLALSPTKVTTLQDNLDQLIPGLAPLLLTFLCMWLLKKKVSPIVIILGLFVVGVVGHLI GLL >gi|284795544|gb|ADDQ01000005.1| GENE 7 8680 - 9057 425 125 aa, chain + ## HITS:1 COG:CAP0069 KEGG:ns NR:ns ## COG: CAP0069 COG4687 # Protein_GI_number: 15004773 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 123 12 134 135 194 78.0 5e-50 MVQSLNTKVDLVIDATAFTGLTDYGQIMIGDRGFEFYHAKDPRKFIQIPWEEVDYVLASV MFKGKWIPRYAIQTKKNGTYTFASKEPKRVLRAIREYVDPDHMVQSLSFFDVIKRGILSI GKKKK >gi|284795544|gb|ADDQ01000005.1| GENE 8 9305 - 9832 680 175 aa, chain + ## HITS:1 COG:SA2491 KEGG:ns NR:ns ## COG: SA2491 COG3247 # Protein_GI_number: 15928285 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 3 174 2 169 170 77 33.0 9e-15 MEQRQHHGMDWGSLVLGILFVLTALISFQNPAGNLIAIVMVFAIFAIIKGIFEIFVRNRM KELLGYKAYAPIILGIIDILIGVYLLFNLNIGVAVLPFVFAIWFLFDSIFGLFTLDFAKR VSTGYFWFTLIVDVLGIILGVMLLFNPLSSALTLSFLVGFYFMMFGISNIVYAFR >gi|284795544|gb|ADDQ01000005.1| GENE 9 9879 - 10082 231 67 aa, chain - ## HITS:1 COG:no KEGG:EF0026 NR:ns ## KEGG: EF0026 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 67 1 67 67 92 100.0 6e-18 MNNQRPMFINILLVVLLFLVVGSLFSAVVGIVGSLLWLAVKILVPVAIIVWLVRTISGNN GNCHRRY >gi|284795544|gb|ADDQ01000005.1| GENE 10 10280 - 11050 876 256 aa, chain + ## HITS:1 COG:BH2675 KEGG:ns NR:ns ## COG: BH2675 COG1737 # Protein_GI_number: 15615238 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 15 245 20 259 287 90 27.0 4e-18 MTTEGLIALLEKKRNDLSKIENQVLDYILTHMTEISSQTIYEVAQALFVSTATISRTAKH LGYRGFQELKYAIVQSVQSESTESDSRSFQAITQQLIANVQDSFQQMDEAKVAEMLKMIE RANTIEVFGVGGSFPICTDFARKLTFLGKKAYARSDWDEQAAAVKNLDGQDLAIFVSYTG ETKGILAYARVAQEQQVPMISLISTKGSTLEKLSTTTLFAKGTTRYHQRVDLSSRIAVIC LFDTVLLMYAEAKQPR >gi|284795544|gb|ADDQ01000005.1| GENE 11 11199 - 12767 1823 522 aa, chain + ## HITS:1 COG:malX_1 KEGG:ns NR:ns ## COG: malX_1 COG1263 # Protein_GI_number: 16129579 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Escherichia coli K12 # 7 425 8 430 450 499 61.0 1e-141 MAVKKKKATFWEFFQGLGKTFMLPVALLAFMGILLGLGSSFSSESMIETIPFLGKPAVKI IFQFMSTIGGFAFAYLPVMFAMAIPLGLVRKEKGIAAFSGFVGYTVMNLAINFYLVQTNR LVDPEQLREAGQGMVFGIQTIEMGVLGGIIAGLIVYKLHNRFYTVQLPDSFAFFSGARFV PIITSLVMAFVGLVIPLVWPLFALMIMAIGQLIQRSGIFGPFLFGSGERLLLPFGLHHIL VSMIRFTEAGGSAVVAGKEVFGALNIFYAELQNNLPISPSATAFLSQGKMPTFIFGLPAA ALAMYHTAAPTNRHKIKGLLLSGVIATAITGITEPIEFLFLFISPLLWLFHVIMTGLGFM VMALLGVVIGNTDGGLLDFVIFGLLQGTYTKWWWVLIVGAIWFVVYYFVFKTVIVTFDLK TPGRDKVLDETEYTDQEVQYKKTGGYDAPGILAALGGQENIQAIDNCITRLRLVLADANK VDDDKLKQLGALGVVHLDAQNVQVIIGTKVTTVRNQLEMILG >gi|284795544|gb|ADDQ01000005.1| GENE 12 12791 - 13996 930 401 aa, chain + ## HITS:1 COG:malY KEGG:ns NR:ns ## COG: malY COG1168 # Protein_GI_number: 16129580 # Func_class: E Amino acid transport and metabolism # Function: Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities # Organism: Escherichia coli K12 # 3 388 4 389 390 349 44.0 7e-96 MSFDKAIDRRGTYCTQWDFVEDRFGEADLLPFTISDTDFAVPEAVLATLQERLNHPVFGY TRWNHPQLKEAIQTWYQTRFQTKIEEHWIMYTPTVIYGISALIQLLTNEGEGIILQTPAY DAFFKVIQENKRQVVANELLYQEKRYSIDFIDLEKKLAQPENRCLLLCSPHNPTGRVWEQ WELKRIVSLCQQYDVFLLSDEIHMDIVNKGQVHRPITQFDYKKSAIITSGTKTFNFPGLI FAYALIPDNELRDAFQLKLKNADGLSSTSILGMLATMTAYQKCGTWVDELNDYLAENQRY VKDFLQTYLPKIKVTELEATYLMWLDVSAAVPDVARLQEALVSVGKVAIMDGSIYGGNGQ RFLRLNIGCSQAKLHEGLERMRQGFEAVLQKDGTASALGNN >gi|284795544|gb|ADDQ01000005.1| GENE 13 14096 - 14476 487 126 aa, chain + ## HITS:1 COG:SP1567 KEGG:ns NR:ns ## COG: SP1567 COG0251 # Protein_GI_number: 15901410 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Streptococcus pneumoniae TIGR4 # 2 124 3 125 126 156 63.0 1e-38 MKTIKTKQAPQAIGPYSQAKIVNGLLITSGQIPLDPETGKVVGTTIKEQTNQVLKNIQGI LTEAGSDFAHVVKTTCYLQNMADFTAFNEVYAEYFSAEYPARTTIEISKLPMDVLVEIEI IAEVVA >gi|284795544|gb|ADDQ01000005.1| GENE 14 14667 - 17258 2428 863 aa, chain + ## HITS:1 COG:lin1803_2 KEGG:ns NR:ns ## COG: lin1803_2 COG2898 # Protein_GI_number: 16800871 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 257 849 1 590 613 412 38.0 1e-114 MKKNISQLTQWLKEHSLLLKLIFLGSVLVFVANQVTHIAQGMTWADIFSTMEQQSTGRLI GMVLAGLLGVIPMLLYDYVVVKLLEKEGKPPMKRMDWLTSAWVTNTINNLAGFGGVVGAT LRINFYGKDVPRGKVVATVSKVALFLISGLSILSFVAFVDLFFIRTQNVFREYWVWLLLG SLIAPALWFFTYLKRRTLFKTFFPKAVLLLFGASLGQWLGGMFAFLMIGRLMQVPVSMVS VYPMFVIATLIGMLTMVPGGMGTFDVLMILGLSQLGIDRSQAVVWLLYYRLFYYVTPFMT GVILFLQQAGMKVNQFFDNLPRLFSQKVAHFILVAALYFAGIMMVLLSTVTNLSNVSRLF QVLLPFSFNFLDQTLNLFVGFLLLGLARGISMKVKKAYWPTIILLGFCIVNTVARTTSWQ LIAVYAVILLAVILARKEFYREKFVYSWGALTVDSILFGCLFIGYAVAGYYAARPAGGNQ VINHFLLFPSDDVWFNGLIGLSISLIGLFFLYQYLAETTVTLGEGFEEARLTRFLEKFGG NEGSQFLYLKDYGHFYYQEEGEDQVLFGFQMKFNKCFVLADPIGQREKWTAATLAFMDQA DLLGYQLVFYRISEEYVMNLHDCGFEFMKVGEEGLIQFDEPSTVNQIAWTETVTEKIAAE AADFQFEFYPETISDALYQELERVSADWSRNQKERYFIGGRLDPKYLKCSSVGLVRQKQT VIGFITGKEMEKGKSISYDLLRIRSEAPAFTREYLFTHFIETYQQQGYQLIDIGMAPLAN VGESKYSFLKERFVNIFYKYSYQIYAFQDTRKRKEQYVTSWQPRYFAYPKRTSVLFAFVQ LSLLITKGRHQSVSLVEEAMTEI >gi|284795544|gb|ADDQ01000005.1| GENE 15 17874 - 17936 120 20 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFSTVHEYLGSIFGGGGRSF >gi|284795544|gb|ADDQ01000005.1| GENE 16 17974 - 18261 410 95 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256960794|ref|ZP_05564965.1| ## NR: gi|256960794|ref|ZP_05564965.1| predicted protein [Enterococcus faecalis Merz96] # 1 95 1 95 95 107 100.0 3e-22 MKLDSSLFSKKMYMGVVFVMVVCVINLTQPHLTSTLGISTYAAKKVIDIISAAGSVWSVV GIVAAVVGGGGIGAAILVTAKSFVKRYGKAFATAW >gi|284795544|gb|ADDQ01000005.1| GENE 17 19283 - 19510 164 75 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293386712|ref|ZP_06631285.1| ## NR: gi|293386712|ref|ZP_06631285.1| conserved hypothetical protein [Enterococcus faecalis S613] # 1 75 92 166 166 102 98.0 1e-20 MIFSGNRKLAVLLVDFTYLTIVIFCISFLYYQLKNKGILTRKKENNFIVQYILFIFILLS LIGKSYIIKYLIESS >gi|284795544|gb|ADDQ01000005.1| GENE 18 19519 - 20028 78 169 aa, chain + ## HITS:1 COG:no KEGG:SEQ_0218 NR:ns ## KEGG: SEQ_0218 # Name: not_defined # Def: membrane protein # Organism: S.equi_equi # Pathway: not_defined # 50 169 41 160 160 61 30.0 9e-09 MKQDNKFKVKEYLLFFLAAILYLMFVYFTFEQFDIPSEVNEASIKSVKYGVSYSLEIIAN NTRNFVQYILLFPIVPVLILYELFMISFQVWISVNNVGSFETFKLLFKHGVVELPNMFLY MFLSLNCCIIFFKRFNVIDVFKAIKQNKKIYIFSYILVCISGIIEGMIG >gi|284795544|gb|ADDQ01000005.1| GENE 19 20025 - 20651 502 208 aa, chain + ## HITS:1 COG:AF1006 KEGG:ns NR:ns ## COG: AF1006 COG1131 # Protein_GI_number: 11498611 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Archaeoglobus fulgidus # 4 186 3 183 285 59 27.0 4e-09 MKTVIELENFGKVYQEKTIFSAINISFLNSMYFLRGSNGSGKSVFLRCLGNIEYFSMGTF KHNNKKNLFLTDQSLCHYYLTIIENIELFYSIHGLELTTTKIELIKKLYNDDKQLTTLAE NASLGMLLKAACTLLFEKNHWDLVILDETFSSIDKQSRDILFEQCHKLILEGTCVILVSH NKLESEYKYNYFVINLDEEGELIEYKEE >gi|284795544|gb|ADDQ01000005.1| GENE 20 20632 - 20934 160 100 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256960791|ref|ZP_05564962.1| ## NR: gi|256960791|ref|ZP_05564962.1| predicted protein [Enterococcus faecalis Merz96] # 1 100 1 100 100 107 100.0 3e-22 MNTKKSNWSIIAFFIPYIVSNIFVFFTLIEKDNKLLEVIEESSKLLNISNGKFNFFMIVV VIIANLFIFFVTFILLKIILLIFGLKKIMIKIYLSVYYYQ >gi|284795544|gb|ADDQ01000005.1| GENE 21 21212 - 21478 68 88 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256960790|ref|ZP_05564961.1| ## NR: gi|256960790|ref|ZP_05564961.1| predicted protein [Enterococcus faecalis Merz96] # 1 88 1 88 88 127 100.0 2e-28 MKIIKLITYFILNKELYANLTNLKLVNIYNQINSIPVKVLVILNKFFARFCYILYRKISK IQIPLKISALFKFGRDSQSYYVFFVDSS >gi|284795544|gb|ADDQ01000005.1| GENE 22 21586 - 22791 1216 401 aa, chain + ## HITS:1 COG:SA0191 KEGG:ns NR:ns ## COG: SA0191 COG0845 # Protein_GI_number: 15925901 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Staphylococcus aureus N315 # 1 399 1 368 370 75 24.0 1e-13 MKKLTKTIFLLSIIGGILLFSGIIIYKSNLTASKKEDLYNTVTVKKSDSLIFKGIVQPKT TSYLNFDQSLGKINTISVKNGQEINENDVVATYQNTTVEDQAEEQTQSLEKLNLAVTNAQ INLDNATQKQQELENRLTIAKNEQTTIVNKKMDDEIKKTEKAESDNKIETIQQALDTQKE AVLQAQQALDAANVDLSSANNTIEQTKKKITTTVTAPFKGIVYTNDKGKVDTTVPYATIV SPETVIKGSVTEYDYNKVKVGQHVTISQINEEKATDGIITEINALPEDMAVSAQNTSSTK NSTISIFSFLISPKEPIQYGYNVQISVPMNNLELAKKNTVKENNNEVFVFIYREGEVVKK KIEVKEDNEKYVVKTGLKENDLIIENPDTSLKDGQKVTVKQ >gi|284795544|gb|ADDQ01000005.1| GENE 23 22788 - 23471 304 227 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 221 1 219 245 121 35 7e-27 MIELNKINKYYTNEEESLHVLKDIQLSIKKGEMIAIMGPSGSGKSTLINLLGFIDRKFEG EYLFEGRSLVNTEDDILSKIRNQTVGFIFQNFSLIESNTVYENVELPLLYNGVSPFKTKE KVFSVLDRVGLKGKEYKYPKQLSGGQQQRVAIARALINHPKFIIADEPTGALDTHTSEEI IQLFTTLNKEDDVTLIMVTHNPEVVPYCHRLLTIRDGAIIEDKELVQ >gi|284795544|gb|ADDQ01000005.1| GENE 24 23468 - 24667 278 399 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 [Flavobacteriales bacterium ALC-1] # 6 399 8 411 413 111 25 8e-24 MNLYVNMRSAWKAIKNNRKRSVLTMVGIIIGISSVITILAIGRGFEKDTIKNLTKSDSKD VEIQLNFTPSDTSLYDTNTKFFQDIDLSTIRNVEGVKKADYSKIDEEQIYKDLFIRGNKK NKQIKLIDSEGKKVSIGRNLTGQDSGLLNKVATIDSFTAKELFNTLERALGKGIEIEQEL FKVVGVFPGEEQDNLFSLSNTNIEIPEDTYHYYFKSDKNTSSLTLVLKEGVKPDKVTSKV IKQLKDKGSLRHLGEYEVIDTAMLTKGISQILSTITYFITAVAGISLFIAGVGVMNMMYI SVSERTKEIGIRRALGATRKSIMLQFLLEGLILTISGGIIGYLLGMIFAYGIGSLIEVHV SVDLFTIILAVGVASVIGLVFSVMPASEAAEKDIIDILR >gi|284795544|gb|ADDQ01000005.1| GENE 25 24965 - 27580 2389 871 aa, chain - ## HITS:1 COG:SP2231 KEGG:ns NR:ns ## COG: SP2231 COG4485 # Protein_GI_number: 15902035 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 6 844 2 829 850 526 39.0 1e-149 MKNKSRQFLKNNWPYMLASFFIPFLIMAIIYLSIGIYPGSSRSVLASDAFSQFSNFHASF NNVLHGKQSLFYTWNASLGLNYLSLISYYLGGLFTPLVFFFNNQNMPDALYFLTLLKIGS VGLSFWFLAKQTFKIPKWSHVTLSVSYALMSFIVAHSELIMWLDAFIYLPLVILGIHRLM DQRKPTLLFVSYFFLFITNYYFGFMIGLFSFLYYFARTFTDWQRYKSRIVAYFTTSLLAG GASMIMVLPAVLDLRTNGETLSEITTFKTEATAFLDIIMKNMIGVYDTTKYGSIPFIYIG LLPLIFCLFYFVTKEVPLKNKLLFGSLFVLLIASFYITPLNLFWHGMHAPNMFLFRYSFL FSFLVILLAGYGWEKFEKDDLGVLSGLILILLAIFALAMGTKGATSYTYVTLTSFVLTAT FLLLYFFGIAFYQLKKAPMQYLVILLLLLVSGEAIINTRAMVTGILDDWNYASRSLYSEP YPDLKNLVDQTKKENDTFYRLENLNGVSANDGINYGYSGISMFSSVRNRHSSTYLNALGF RSRGTNLNIRYQNNTLLMDALMGIKYNIAENNPMKFGFERQAAAGKYQLYRNENALPLGF LADKEIYNVRQPLNDNLGSQTNLLNALANTNERYFTFYQPTMTLQNNVTITQNTAGVTFT EKQHNVAKEISYTVNVPANTQAYLSLFPTDFAQLESSTATVTVNGSSQQSQIGITGQYYN LGYYPKDTTVNFKVSFYGTKAVSFVQPQVVGLNTNAFEKAISAVQEKGVDLTTGKRSASG TFTADKDQVLVTTIPYDKGWRVKIDGKKVTPKAFKDAFLSVPVSVGTHTIQFSYLPEGLI PGIVLFVLCTGGFVAYVTLIPARRNRKKEDK >gi|284795544|gb|ADDQ01000005.1| GENE 26 28124 - 28633 612 169 aa, chain - ## HITS:1 COG:YDR540c KEGG:ns NR:ns ## COG: YDR540c COG4283 # Protein_GI_number: 6320749 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Saccharomyces cerevisiae # 1 166 1 166 179 174 57.0 6e-44 MRTYESKEALIEAIQIASQKYLAEFAEIPETLKDHRIETVAKTPSENLAYQLGWLNLLLS WEEQEQRGLTVQTPAEGYKWNQLGSLYQSFYQTYGQMSLESQLIVLQDTLEKLLHWIDSL SEDELFLPQQRAWATTKAQWPLWKWIHINSVAPFTSFRTQIRKWKKACL >gi|284795544|gb|ADDQ01000005.1| GENE 27 28641 - 29108 602 155 aa, chain - ## HITS:1 COG:no KEGG:EF0035 NR:ns ## KEGG: EF0035 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 155 1 155 155 285 98.0 3e-76 MKNTQFALFMVLNGRATEALTFYQEAFAGDILFKITNQEFKERLNPSLTIPAGEEHWLSH SILQMDTFQLQLADNPLFAGMNTTPTEQLTLSLTVESRHSAKTIFEKLTRHPESCIIQEP IENEFATFYAIVKDPFGLVTQITHEKQADPTKKGS >gi|284795544|gb|ADDQ01000005.1| GENE 28 29164 - 30120 801 318 aa, chain + ## HITS:1 COG:lin0383 KEGG:ns NR:ns ## COG: lin0383 COG2378 # Protein_GI_number: 16799460 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Listeria innocua # 8 316 1 310 315 146 27.0 4e-35 MTPMEGKMKKSERLNQELFFLRTHPQFNLNQLMKTFGISKSTALRDIEALENLGVPLYVE NGRYGGYRVLNKPLLPPIYFNENEVLAIFFSLQLLKLVAESPFGHSYQQIKQKLLHSLDE PTQFKISQMSKVVYYEGIEQVEAPGNLEQLFHCILAQQVIQFNYTRYEATTKKILPTRLT ILEGYWYCSGYDVTKKAWRTYRCDFMEAIQQLNQTLDFTTEELKESYRHQQTTARTIPFK AIITEKGKEFFYKHRFDNIQLEETPTQCFLVGQIHPTETQFLANYFMGFGEEVTILEPVQ VKQAYVESIMRIQKKYQE >gi|284795544|gb|ADDQ01000005.1| GENE 29 30212 - 31459 1428 415 aa, chain - ## HITS:1 COG:lin1227 KEGG:ns NR:ns ## COG: lin1227 COG0014 # Protein_GI_number: 16800296 # Func_class: E Amino acid transport and metabolism # Function: Gamma-glutamyl phosphate reductase # Organism: Listeria innocua # 1 415 1 415 415 528 65.0 1e-149 MTDLKQLGQQAKEASYTLGLMDTRQKNTLLNKMAAAIEANASRILQANALDLEQAATHGI SETMQDRLRLTEERITAMAEGIRQVATLPDPIGEVDKMWRNEAGLLIGQQRVPLGVIGII YESRPNVTTDAASLCFKSGNAVILRGGKEAFHSNQILVTILQEALIQQAVSPHLIQFVDD TSRETAQQFMRLNDYLDVLIPRGGANLIKTVLTTATVPVIETGTGNCHIYVDKDAQLTMA TEIIVNAKCQRPSVCNAAETLLIHQEVAEAFLPTIEKALKEFHVELRVDERALAIFEEAI PATEQDWETEFLDFILAVKVVDSLDEAIQHINRYNTKHSESIISDNYFATQQFLQQVDAA AVYANASTRFTDGFEFGFGAEIGISTQKLHARGPMGLAELTSTKYVIYGNGQARS >gi|284795544|gb|ADDQ01000005.1| GENE 30 31452 - 32267 877 271 aa, chain - ## HITS:1 COG:lin1228 KEGG:ns NR:ns ## COG: lin1228 COG0263 # Protein_GI_number: 16800297 # Func_class: E Amino acid transport and metabolism # Function: Glutamate 5-kinase # Organism: Listeria innocua # 1 269 1 269 276 334 63.0 1e-91 MRNKLQQAKRIVIKVGTSSLIYPNGNINLKAIDQLAFTLSDLSNQGKEIILVSSGAIGVG LNKLNLSVRPTTIPEQQAVAAVGQAELMNIYNQRFSTYSQQMAQVLLTRDVIEYPESRNN VTNTFEQLLKMNIIPIVNENDTVAIEELDHLTKFGDNDQLSAIVCQIVQADLLVMLSDID GFFSDNPTVNKEATLFSEINEINEDLFQLAGGKGSRFGTGGMSSKLKAAERVLANQQAMI LANGKQPKIIFEILEGKDIGTLFIKGGHESD >gi|284795544|gb|ADDQ01000005.1| GENE 31 32383 - 32460 77 25 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRESWDFLGFGLFILREDDRLKEGK >gi|284795544|gb|ADDQ01000005.1| GENE 32 32593 - 33072 584 159 aa, chain + ## HITS:1 COG:L181168 KEGG:ns NR:ns ## COG: L181168 COG0756 # Protein_GI_number: 15672158 # Func_class: F Nucleotide transport and metabolism # Function: dUTPase # Organism: Lactococcus lactis # 1 157 1 149 150 155 53.0 2e-38 MKQRGFEIISKYQEEGLSVPQRATKGAAGYDFQAAETVVVPSLWKLQQAGENPKPILVKT GIKAYMPDSEYLELVSRSSNPLKRFLLLANGVGVIDSDYYNNENNEGHIMFQFLNFGYED VVIEKGERIGQGIFKPFLLADDDQVEAERTGGFGSSGQK >gi|284795544|gb|ADDQ01000005.1| GENE 33 33151 - 34521 1430 456 aa, chain + ## HITS:1 COG:SPy0236 KEGG:ns NR:ns ## COG: SPy0236 COG1066 # Protein_GI_number: 15674421 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent serine protease # Organism: Streptococcus pyogenes M1 GAS # 1 455 1 452 453 633 73.0 0 MAKKAKVQFECQSCGYVSPKYLGRCPNCGQWNSMVEEVIQDTSDRRARVSLTGKKTQPQR LSEVVPKKEPRVKTELVELNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSQQLAATGGT VLYVSGEESAEQIKLRAERLGTVNETFYLYAETDMHEISRAIEKLEPDYVIIDSIQTMTQ PDVTSVAGSVSQVRETTAELLKLAKTNGIAIFIVGHVTKEGSIAGPRMLEHMVDTVLYFE GDKHHTFRILRAVKNRFGSTNEIGIFEMQTHGLVEVMNPSQVFLEERLEGATGSSIVVAM EGSRPILVEIQALVTPTMFGNAKRTTTGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAG GVKINEPAIDLALAISIASSYKEKGTSSSECFIGEIGLTGEIRRVNSIEQRVREAQKLGF TKVYVPKNNLGGWEAPEGIEIIGVSTIGETLRKVFK >gi|284795544|gb|ADDQ01000005.1| GENE 34 34521 - 34604 67 27 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKIEIIRLGCWWRMIFVRPTTLDVFIK >gi|284795544|gb|ADDQ01000005.1| GENE 35 34622 - 35767 1367 381 aa, chain + ## HITS:1 COG:lin0266 KEGG:ns NR:ns ## COG: lin0266 COG4956 # Protein_GI_number: 16799343 # Func_class: R General function prediction only # Function: Integral membrane protein (PIN domain superfamily) # Organism: Listeria innocua # 5 362 5 357 357 375 54.0 1e-104 MQKRIITLLMIIAGASLGISLFPMAWEMAKQGNNSWLNNNFTNGLIGAIIFFILSLGLAK YIVSAVKKIEAALNEMSLTYLLFGSIGAIIGLTIGVIISIPMYNLQIPVVNSLLPILVMI ILGYLGFRMGTTRIEEWKKVFTPRQKKANTEDTEGQMLERKVEDNFHKYKILDTSVIIDG RIYDIAKTGFLEGVLLIPNFVLYELQYIADSGDSLKRVRGRRGLDILNALQKEEGISVEM YDGDFEDISEVDSKLIKLAKLLDGVVVTNDYNLNKVSEFQNVPVLNINALANAVKPVVIP GETMNVMVVKAGTERQQGVAYLDDGTMVVVEDGQHYMNEQIEVVVTSALQTAAGRMIFAK PAHAGRGINDRKDNHPKNDKN >gi|284795544|gb|ADDQ01000005.1| GENE 36 35786 - 36259 491 157 aa, chain + ## HITS:1 COG:BS_yacN KEGG:ns NR:ns ## COG: BS_yacN COG0245 # Protein_GI_number: 16077159 # Func_class: I Lipid transport and metabolism # Function: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase # Organism: Bacillus subtilis # 1 157 1 157 158 197 60.0 9e-51 MIRIGQGFDVHQLVPQRPLIIGGVTLPYEKGLLGHSDADVLTHAIIDAILGAAGLGDIGQ LFPETDPQFKNANSVNLLKKVNEKVGRSGFTIGNIDCTILAEEPKMSPYLAEMKKNLAAS CHLAVTQVNIKATTMETMGFVGKKEGIGAIAVALLEK >gi|284795544|gb|ADDQ01000005.1| GENE 37 36312 - 37769 1724 485 aa, chain + ## HITS:1 COG:lin0269 KEGG:ns NR:ns ## COG: lin0269 COG0008 # Protein_GI_number: 16799346 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Listeria innocua # 3 485 6 488 491 634 65.0 0 MTKVRVRYAPSPTGHLHIGNARTALFNYLFARHNDGEFIIRIEDTDQKRNIEDGEKSQLE NLAWLGMEWDESPAHPGEYGPYRQSERKEIYQPLIDQLLSSNRAYKCYCTPEELEAEREA QQARGEMPHYAGTCANLTPSEQAAKEAAGLEPVIRFRVPRNTEYKFDDIVKGEITFESDN IGGDFVIQKRDGMPTYNFAVAVDDHLMKISHVLRGDDHIANTPKQLMIYEAFEWTPPVFG HMTLIINSETGKKLSKRDETILQFIEQYRELGYLPEAMFNFIALLGWSPVGEEEIFSQED LIKLFDEQRLSKSPAAFDAKKLEWINNQYMKQMDLSELTDMCIPYLVADGRVEENPSPEK IEWLKQLVSLYQPQMSYAAEIVELSNLFFNEHPVLDDAAKEFLQGETVPTVLQAFKEQLE ALDVFDVPSIKAAIKAVQKETGVKGKNLFMPIRIAVSGQMHGPELGETIELLGKEKALDH LNKVL >gi|284795544|gb|ADDQ01000005.1| GENE 38 38039 - 38578 619 179 aa, chain + ## HITS:1 COG:SPy1944 KEGG:ns NR:ns ## COG: SPy1944 COG1045 # Protein_GI_number: 15675746 # Func_class: E Amino acid transport and metabolism # Function: Serine acetyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 173 1 173 193 234 65.0 7e-62 MSWLKRSVAAVKRNDPAARTTLEVLLTYPGLHALFWHRLSHFLYRHQLFLLAKIHAQFWR FITGVEIHPGATIGAGVFIDHGMGIVIGETAEIEEDVVLFHGVTLGGTGRDTGKRHPTVK KGAMISARAQILGPVVIGERSKIGAGAVVISDIPADATAVGVPAKVVRLNGRKVEKGHD >gi|284795544|gb|ADDQ01000005.1| GENE 39 38571 - 39983 1817 470 aa, chain + ## HITS:1 COG:BS_cysS KEGG:ns NR:ns ## COG: BS_cysS COG0215 # Protein_GI_number: 16077162 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Cysteinyl-tRNA synthetase # Organism: Bacillus subtilis # 2 470 3 466 466 563 58.0 1e-160 MIKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGYE VNYVSNFTDVDDKIIKAAKELKITAPEVAERFIKAFEEDTQALNVQPATLHPRVMDHMPD ILTFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRTGVEQQLKEDP LDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLEFPHHENE IAQSEAKTGHTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQKVDPQILRFFMSTT QYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLPEDEHYLAQLNELEQRFIT EMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKLFSGWLAIFGLFFKNEELV DAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLEDTPQGTRWRRSE >gi|284795544|gb|ADDQ01000005.1| GENE 40 39980 - 40378 345 132 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 [Bacillus selenitireducens MLS10] # 5 123 11 129 141 137 55 1e-31 MRDYKQLNGLALAYVGDAIYEIYIRDYLVSLGQTKPNVLHRMATHYVSAKAQASLMQAML AGEMLTEEEEVMYKRGRNAKSHTFAKNADVTTYRVATGFESLMGYLHLTQQKERLEELIN WCIKKVGETNEK >gi|284795544|gb|ADDQ01000005.1| GENE 41 40368 - 41225 570 285 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 45 285 7 249 255 224 46 1e-57 MKNEKSRPFKKGKKRPERSDKRSKERNPRPATAGADGTSEELADNFVFGFHATVEALQQG RGNKLFLQEDARGEKIEQLKQAAKEQAVPVKWVPKAKLDTMSDHGVHQGMVLAITAYQYL TLEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVT KASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSGTDYRRWNTQGAIALIIGNEGR GMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYRGRNPL >gi|284795544|gb|ADDQ01000005.1| GENE 42 41240 - 41770 534 176 aa, chain + ## HITS:1 COG:SPy1937 KEGG:ns NR:ns ## COG: SPy1937 COG3688 # Protein_GI_number: 15675740 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein containing a PIN domain # Organism: Streptococcus pyogenes M1 GAS # 1 173 1 172 172 149 47.0 3e-36 MKKQLLIVDGYNMIGAWPELVQLKKQERLEDARELLLSRLSNYAKYEGLEIIVVFDAQLV PGIQQTYKKYLLTVVFTKEDETADSYIERLAGEKNDRLTQVTVATSDLAEQWVVFSQGAL RTSANELYKAVQKTEKTIAIHATDIHFQQFRRNSPWNVEQLSKLSEKLEELSQKKD >gi|284795544|gb|ADDQ01000005.1| GENE 43 41856 - 42422 642 188 aa, chain + ## HITS:1 COG:lin0275 KEGG:ns NR:ns ## COG: lin0275 COG1595 # Protein_GI_number: 16799352 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Listeria innocua # 2 186 10 201 201 59 26.0 4e-09 MLEQIQQALAGDQEQFQALYGQYQPVIYKCMKKYYLKDYDTEDWLQEGRIVFFRTLERFD SEKQASLGKFFKRNFENHVHSLIRHQCAYKRRTDTLSISLEQRLESAGEELVDYLGTAAT DPLGQLMIQEKLAAFPTRLSSLEQQILNAYLKGYTLEEIAKVRGGTFSAVRSAYDRAKAK MKYTLENE >gi|284795544|gb|ADDQ01000005.1| GENE 44 42537 - 42782 276 81 aa, chain + ## HITS:1 COG:lin0228 KEGG:ns NR:ns ## COG: lin0228 COG4466 # Protein_GI_number: 16799305 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 76 1 76 85 93 60.0 1e-19 MPTTLSSIKKDLEGRIGSEIMLVAQTGRKRQTERKGILTETYPSVFVVDLDPDENSFERV SYSYSDVLTRTVEIEFIGQAV >gi|284795544|gb|ADDQ01000005.1| GENE 45 42963 - 43814 730 283 aa, chain + ## HITS:1 COG:lin0229 KEGG:ns NR:ns ## COG: lin0229 COG1947 # Protein_GI_number: 16799306 # Func_class: I Lipid transport and metabolism # Function: 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase # Organism: Listeria innocua # 1 280 1 280 291 335 59.0 7e-92 MEIIERAPAKINLGLDVLHKRVDGYHEVESIFASVDLADHLTFENLEEDIIRIETDSSFL PVDRRNHVYQAVDLLKRTYNIHKGIKIYIEKRIPVAAGLAGGSSDCAAALRGLNKLWNLG LTMDELCEIGSQIGMDVPYCLRGGTAFANGRGEKIEALPTMPQCWIVLVKPRISVSTSTV FNDLAVDELHHPDIAGLRIAIENGDYTGMTQTVGNALESVTIARHPIVQQIKDRMLKYGA DAALMSGSGPTVFALCEKKTRAQRIYNGLKGFCEEVYLVRTLK >gi|284795544|gb|ADDQ01000005.1| GENE 46 43981 - 44934 1023 317 aa, chain + ## HITS:1 COG:lin0191 KEGG:ns NR:ns ## COG: lin0191 COG0803 # Protein_GI_number: 16799268 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Listeria innocua # 12 316 9 311 312 301 55.0 1e-81 MTKIYRRLIIGVTLAISAFLLASCGQTTQSPKEKKELTVMTTFYPMYDFAKQVVGDEGEV ELLIPAGTEPHDYEPSAKDLAKITDADVFVYNSKELETWVPNVIENLDTKKVSIVEASQS IQLMQGTEEEESGEEGHEGHNHSHELDPHVWLDPVLAQKEVTAIRDALIKKYPEKKAVFE KNTAAYLEKLTALDKEYQAAFAGAKNRTFVTQHAAFGYLAKQYGLTQEPIAGISPDQEPS PSRLAELKKYIKTNNVSVIYFEASASTKVAKTLADETGVELAVLNPLESLTQKEQEAGEN YVSVMKENLAALQKSIH >gi|284795544|gb|ADDQ01000005.1| GENE 47 44960 - 45652 233 230 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 12 229 14 232 311 94 32 1e-18 MHYIEVENLTFYYDDEPVLEDVSYYVDPGEFVILTGENGAAKSTLIKSTLGLLKPTSGKI TVAKKNSAGEKISIGYIPQQVASFNAGFPSTVIELVRSGRFPRNRWFKPLTKKDHLHVEK ALKSVDMWEMRHKRIGELSGGQKQRISLARVFATDPDLFILDEPTTGMDEQSRNEFYQLL QHSAHEHGKAILMITHDHEDIKTYVDRQIRLVRKEDSKWRCFHMSEESYT >gi|284795544|gb|ADDQ01000005.1| GENE 48 45814 - 46653 1091 279 aa, chain + ## HITS:1 COG:L165709 KEGG:ns NR:ns ## COG: L165709 COG1108 # Protein_GI_number: 15674095 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Lactococcus lactis # 1 267 1 267 269 242 59.0 5e-64 MAEMLSYAFMQKAFLAALFISVIAPMLGVFLVIRRQSLMADTLSHVSLAGVALGFFFNWN PNLMTLIVVIVAAIILEYLRMIYSTYSEISIAILMSGGLALALVLMNLTGGNSAASIQSY LFGSIVTITWDQVVMLAILFVVLVLLFMLFKRPMYVLTFDEDTAHVDGLPIHWMSMLFNV ITGVAIAVMIPIAGALLISAIMVLPAAIGMRIGKGFNTVIIISVFMGLIGMLTGLTSSYY LETPPSASITLIFIGLFLLVNIYRRVVVMVQRKQKMQRN >gi|284795544|gb|ADDQ01000005.1| GENE 49 46797 - 47618 1094 273 aa, chain + ## HITS:1 COG:lin0231 KEGG:ns NR:ns ## COG: lin0231 COG0503 # Protein_GI_number: 16799308 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Listeria innocua # 1 270 1 270 272 354 65.0 8e-98 MKIRRSERLIDMTQYLLDHPHTLVSLTYFADRYQSAKSSISEDLAIVKKTFKERGTGILE TIPGAAGGVRFIPEIPYEEAEQLIMDLCDRLSEQDRLLPGGYVYLSDLLGEPNLLRQVGR IIASKYLGKQIDAVMTVATKGVPIAQAVSYYLNVPFVIVRRDSKITEGSTVSVNYVSGSS ERIEKMELSKRSLKRGSKVLVVDDFMKGGGTVNGMKSMIEEFEAELVGITVFAESKFNGR RAIDDYTSLLYVEDVDTQTKTISVVPGNYFTEK >gi|284795544|gb|ADDQ01000005.1| GENE 50 47829 - 49205 1825 458 aa, chain + ## HITS:1 COG:lin0237 KEGG:ns NR:ns ## COG: lin0237 COG1207 # Protein_GI_number: 16799314 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) # Organism: Listeria innocua # 1 457 1 457 457 542 59.0 1e-154 MENRYAIILAAGKGTRMKSKLYKVLHPVAGKPMVEHILDQVEQTEPTEIVTIVGHGAEMI KSHLGERSQYALQAEQLGTGHAVMQAQELLGGKQGTTLVITGDTPLLTAETLKNLFDYHQ GKNASATILTAHAEDPTGYGRIIRDHVGIVERIVEQKDASEEEARVQEINTGTFCFDNES LFEALAKTDTNNTQGEYYLTDIIEILKKEGKAVAAYQMADFDEAMGVNDRVALSTANKIM HRRLNEMHMRNGVTFIDPDTTYIDEGVVIGSDTVIEAGVTIKGKTVIGEDCLIGAHSEIV DSHIGNQVVVKQSVIEESVVREGADVGPYAHLRPKADVGANVHIGNFVEVKNATIDEGTK VGHLTYVGDATLGKDINVGCGVVFVNYDGKNKHQTVVGDHAFIGSATNIVAPVTIGDHAV TAAGSTITEDVPSEDLAIARARQVNKEGYAKKLPYMKD >gi|284795544|gb|ADDQ01000005.1| GENE 51 49647 - 53391 4037 1248 aa, chain + ## HITS:1 COG:SA0022 KEGG:ns NR:ns ## COG: SA0022 COG0737 # Protein_GI_number: 15925728 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Staphylococcus aureus N315 # 667 1191 113 630 772 428 47.0 1e-119 MKKLSFKKVKWGMHFLMAVALIAPSVTSTAYAVETTSQQSSEAVTSTTDSSRKQEPVITQ ETTDIKQEAPNQATSDSVKQSQKTTAPTETTNLETSTAEKEETSTPQKITILGTSDVHGQ LWNWSYEDDKELPVGLSQVSTVVNQVRAQNPAGTVLIDNGDNIQGTILTDDLYNKAPLVN EKTHPMITAMNVMKYDAMVLGNHEFNFGLPLIKKIQQEATFPILSANTYNKEDGRRFVEG TTTKELDFNQDGLPDLKVGIIGLTIPHIPLWDGPRVTSLNFLPLKEEAEKAVAELKTNDQ ADIIVASIHAGQQNSDPAASADQVIENVAGIDAYILGHDHLSFTKQGAAPNGKTVPVGGP KDTGTEVVKIDLSVAKNADKWEVQEGTATIVPTTNVPADEAVKAATKEYHEQTRAFIQEE IGTATADFLPKQEIKGIPEAQLQPTAMISLINNVQKEVTGAQLSAAALFKYDSKLPAGKI SYATIFDIYKYPNTLVSVPINGENLLKYLEKQGAYYNQTQPDDLTISFNPNIRVYNYDMI SGVDYKIDISKPVGERIVDAKIDGQPLDPAKEYTIAMNNYRYGGLASQGIQVGVPIKNSD PETLRGMIVDYIKKKGTLDPEQEIERNWSIIGTNFDEKWRAKAIELVNDGTLQIPTSPDG RTPNAAAITKQDVRNAGFDLDNAYTIMHTNDVHGRLEAGKGELGMARLKTFKDQENPTLM VDAGDVFQGLPISNFSKGADMAKAMNEVGYDAMAVGNHEFDFGLEIALGYKDQLNFPILS SNTYYKDGSGRVFDPYTIVEKAGKKFAIVGVTTPETATKTHPKNVEKVTFKDPIPEVEAV INEIKEKYADIQAFVVTGHLGVDETTPHIWRGDTLAETLSQTYPELDITVIDGHSHTAVE SGKRYGKVIYAQTGNYLNNVGIVTAPESEPTKKTAKLISAAELLELPENPAVKAIVDEAR TNFNAENEKVIVDYIPFTLDGQRENVRTRETNLGNLIGDAIMSYGQDAFSQPADFAVTNG GGIRADIKQGPIKVGDVIAVLPFGNSIAQIQVTGAQVKEMFEMSVRSIPQKDENGTILLD DAGQPKLGANGGFLHVSSSIRIHYDSTKPGTRLASDEGNETGQTIVGSRGLGIEIKNRQT QKFEPLDEKKQYRMATNDFLAAGGDGYDMLGGEREEGISLDAVLIEYLKSATSLRLYRAA TTIDLAQYKEPFPGERIVSISEEAYKELIGGGETPTPDPKPDPKPDPK Prediction of potential genes in microbial genomes Time: Sun May 15 12:15:03 2011 Seq name: gi|284795543|gb|ADDQ01000006.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont7.1, whole genome shotgun sequence Length of sequence - 95321 bp Number of predicted genes - 122, with homology - 118 Number of transcription units - 37, operones - 19 average op.length - 5.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 41 - 1693 1665 ## COG4166 ABC-type oligopeptide transport system, periplasmic component 2 1 Op 2 1/0.400 - CDS 1711 - 3087 1026 ## COG1305 Transglutaminase-like enzymes, putative cysteine proteases 3 1 Op 3 . - CDS 3104 - 4168 1093 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily - Prom 4210 - 4269 3.3 - Term 4221 - 4264 -0.8 4 2 Tu 1 . - CDS 4279 - 4380 86 ## - Prom 4494 - 4553 3.5 + Prom 4256 - 4315 6.8 5 3 Tu 1 . + CDS 4444 - 4788 579 ## COG2151 Predicted metal-sulfur cluster biosynthetic enzyme + Term 4805 - 4871 15.1 - Term 4802 - 4849 9.1 6 4 Op 1 . - CDS 4886 - 5425 491 ## EF1509 hypothetical protein - Prom 5544 - 5603 5.6 7 4 Op 2 . - CDS 5638 - 6492 391 ## EF1508 hypothetical protein - Prom 6532 - 6591 5.5 + Prom 6689 - 6748 5.4 8 5 Tu 1 . + CDS 6779 - 7330 326 ## EF1506 hypothetical protein - Term 7285 - 7322 1.4 9 6 Tu 1 . - CDS 7327 - 8319 994 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 8404 - 8463 7.2 - Term 8416 - 8453 1.1 10 7 Op 1 . - CDS 8465 - 9757 1566 ## COG0019 Diaminopimelate decarboxylase 11 7 Op 2 . - CDS 9792 - 9890 59 ## - Prom 10092 - 10151 8.0 + Prom 9861 - 9920 8.8 12 8 Op 1 . + CDS 9973 - 11853 1566 ## COG3855 Uncharacterized protein conserved in bacteria 13 8 Op 2 . + CDS 11948 - 12889 899 ## COG2367 Beta-lactamase class A + Term 12894 - 12959 22.1 - Term 12889 - 12940 17.1 14 9 Op 1 . - CDS 12944 - 13354 507 ## EF1501 hypothetical protein 15 9 Op 2 16/0.000 - CDS 13429 - 14064 720 ## COG1394 Archaeal/vacuolar-type H+-ATPase subunit D 16 9 Op 3 16/0.000 - CDS 14069 - 15445 1940 ## COG1156 Archaeal/vacuolar-type H+-ATPase subunit B 17 9 Op 4 12/0.000 - CDS 15438 - 17219 2083 ## COG1155 Archaeal/vacuolar-type H+-ATPase subunit A 18 9 Op 5 13/0.000 - CDS 17237 - 17548 391 ## COG1436 Archaeal/vacuolar-type H+-ATPase subunit F 19 9 Op 6 . - CDS 17538 - 18539 1160 ## COG1527 Archaeal/vacuolar-type H+-ATPase subunit C 20 9 Op 7 . - CDS 18556 - 19137 871 ## EF1495 V-type ATPase, subunit E 21 9 Op 8 16/0.000 - CDS 19154 - 19627 767 ## COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K 22 9 Op 9 . - CDS 19655 - 21634 2045 ## COG1269 Archaeal/vacuolar-type H+-ATPase subunit I 23 9 Op 10 . - CDS 21624 - 21947 501 ## EF1492 V-type ATPase, subunit F - Prom 22196 - 22255 8.9 + Prom 22156 - 22215 10.9 24 10 Op 1 . + CDS 22320 - 22763 543 ## COG1780 Protein involved in ribonucleotide reduction 25 10 Op 2 . + CDS 22822 - 23001 246 ## EF1490 hypothetical protein + Term 23004 - 23070 24.2 - Term 22990 - 23058 24.0 26 11 Tu 1 . - CDS 23067 - 23132 66 ## - Prom 23335 - 23394 7.2 + Prom 23180 - 23239 7.0 27 12 Tu 1 . + CDS 23367 - 23615 267 ## EF1489 hypothetical protein + Term 23685 - 23719 1.1 - Term 23671 - 23709 -0.6 28 13 Op 1 . - CDS 23719 - 24882 658 ## EF1488 hypothetical protein 29 13 Op 2 . - CDS 24875 - 25279 258 ## EF1487 hypothetical protein - Prom 25371 - 25430 7.4 - TRNA 25415 - 25488 78.2 # Met CAT 0 0 - Term 25485 - 25517 1.1 30 14 Tu 1 . - CDS 25582 - 26688 1243 ## COG5263 FOG: Glucan-binding domain (YG repeat) - Term 26713 - 26746 2.4 31 15 Op 1 . - CDS 26747 - 26944 243 ## EF1485 hypothetical protein 32 15 Op 2 . - CDS 26941 - 27297 292 ## EF1484 hypothetical protein 33 15 Op 3 . - CDS 27302 - 27430 262 ## EF1483 hypothetical protein 34 15 Op 4 . - CDS 27430 - 27864 368 ## EF1482 hypothetical protein 35 15 Op 5 . - CDS 27886 - 29529 1171 ## EF1481 hypothetical protein 36 15 Op 6 . - CDS 29548 - 30177 423 ## EF1480 hypothetical protein 37 15 Op 7 . - CDS 30161 - 31315 943 ## COG3299 Uncharacterized homolog of phage Mu protein gp47 38 15 Op 8 . - CDS 31308 - 31655 330 ## EF1478 hypothetical protein 39 15 Op 9 . - CDS 31655 - 31987 252 ## EF1477 hypothetical protein 40 15 Op 10 . - CDS 31987 - 32817 559 ## EF1476 hypothetical protein 41 15 Op 11 . - CDS 32818 - 33180 327 ## EF1475 hypothetical protein 42 15 Op 12 . - CDS 33190 - 33747 632 ## EF1474 LysM domain-containing protein 43 15 Op 13 . - CDS 33747 - 38915 4821 ## COG0739 Membrane proteins related to metalloendopeptidases 44 15 Op 14 . - CDS 38918 - 39058 106 ## EF1472 hypothetical protein 45 15 Op 15 . - CDS 39099 - 39431 473 ## EF1471 hypothetical protein - Term 39448 - 39483 3.1 46 16 Op 1 . - CDS 39484 - 39882 513 ## EF1470 hypothetical protein 47 16 Op 2 . - CDS 39898 - 40935 1300 ## EF1469 hypothetical protein 48 16 Op 3 . - CDS 40932 - 41408 375 ## EF1468 hypothetical protein 49 16 Op 4 . - CDS 41395 - 41754 311 ## EF1467 hypothetical protein 50 16 Op 5 . - CDS 41754 - 42251 214 ## EF1466 hypothetical protein - Prom 42281 - 42340 5.5 - Term 42283 - 42331 7.5 51 17 Op 1 . - CDS 42356 - 42697 242 ## EF1465 hypothetical protein 52 17 Op 2 . - CDS 42709 - 43095 523 ## EF1464 hypothetical protein 53 17 Op 3 . - CDS 43110 - 43991 938 ## COG4834 Uncharacterized protein conserved in bacteria 54 17 Op 4 . - CDS 44013 - 44483 849 ## EF1462 hypothetical protein 55 17 Op 5 . - CDS 44486 - 45586 1048 ## COG3566 Uncharacterized protein conserved in bacteria 56 17 Op 6 . - CDS 45599 - 45808 401 ## EF1460 LysM domain-containing protein 57 17 Op 7 . - CDS 45801 - 46088 303 ## EF1459 hypothetical protein - Term 46111 - 46142 2.5 58 18 Op 1 . - CDS 46143 - 46307 212 ## EF1458 hypothetical protein 59 18 Op 2 2/0.000 - CDS 46300 - 47544 968 ## COG2369 Uncharacterized protein, homolog of phage Mu protein gp30 60 18 Op 3 1/0.400 - CDS 47534 - 48928 1025 ## COG3567 Uncharacterized protein conserved in bacteria 61 18 Op 4 . - CDS 48951 - 50387 976 ## COG5410 Uncharacterized protein conserved in bacteria 62 18 Op 5 . - CDS 50368 - 51093 498 ## EF1454 terminase, small subunit, internal deletion 63 18 Op 6 . - CDS 51145 - 51936 351 ## gi|293382333|ref|ZP_06628272.1| hypothetical protein HMPREF9377_00223 - Prom 52054 - 52113 8.2 + Prom 51831 - 51890 6.6 64 19 Tu 1 . + CDS 52091 - 52564 379 ## gi|293382334|ref|ZP_06628273.1| conserved hypothetical protein 65 20 Op 1 . - CDS 52580 - 53299 722 ## COG3645 Uncharacterized phage-encoded protein 66 20 Op 2 . - CDS 53268 - 53510 172 ## gi|293382336|ref|ZP_06628275.1| conserved hypothetical protein - TRNA 53701 - 53785 61.4 # Lys TTT 0 0 - Term 53858 - 53892 1.0 67 21 Tu 1 . - CDS 53945 - 54529 382 ## EF1450 positive control factor, putative - Prom 54555 - 54614 3.6 - Term 54549 - 54607 16.2 68 22 Op 1 . - CDS 54630 - 54809 119 ## EF1449 hypothetical protein 69 22 Op 2 . - CDS 54825 - 54917 148 ## 70 22 Op 3 . - CDS 54950 - 55129 134 ## EF1447 hypothetical protein 71 22 Op 4 . - CDS 55130 - 55336 254 ## EF1446 hypothetical protein 72 22 Op 5 . - CDS 55330 - 55647 455 ## EF1445 replicase domain-containing protein 73 22 Op 6 . - CDS 55661 - 56275 659 ## EF1443 hypothetical protein 74 22 Op 7 . - CDS 56268 - 56435 195 ## gi|293382343|ref|ZP_06628282.1| 6-phosphofructokinase 75 22 Op 8 . - CDS 56432 - 56785 318 ## EF1442 DNA topoisomerase domain-containing protein 76 22 Op 9 . - CDS 56782 - 57120 206 ## EF1441 hypothetical protein 77 22 Op 10 . - CDS 57121 - 57525 414 ## EF1440 hypothetical protein 78 22 Op 11 . - CDS 57531 - 57758 128 ## EF1439 hypothetical protein 79 22 Op 12 . - CDS 57779 - 58006 234 ## EF1438 hypothetical protein 80 22 Op 13 . - CDS 58031 - 58780 567 ## EF1437 hypothetical protein - Prom 58803 - 58862 3.8 81 23 Op 1 . - CDS 58864 - 59178 175 ## EF1436 hypothetical protein 82 23 Op 2 . - CDS 59199 - 59696 381 ## COG3331 Penicillin-binding protein-related factor A, putative recombinase 83 23 Op 3 . - CDS 59712 - 60470 448 ## COG3935 Putative primosome component and related proteins 84 23 Op 4 . - CDS 60488 - 61189 418 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I 85 23 Op 5 . - CDS 61189 - 62358 734 ## EF1432 hypothetical protein 86 23 Op 6 . - CDS 62359 - 64473 1769 ## EF1430 hypothetical protein 87 23 Op 7 . - CDS 64478 - 64768 386 ## EF1429 hypothetical protein 88 23 Op 8 . - CDS 64824 - 65039 240 ## EF1428 hypothetical protein 89 23 Op 9 . - CDS 65036 - 65206 176 ## gi|227553225|ref|ZP_03983274.1| conserved hypothetical protein 90 23 Op 10 . - CDS 65218 - 65448 224 ## EF1426 VrlI protein, putative 91 23 Op 11 . - CDS 65429 - 65989 377 ## EF1425 hypothetical protein 92 23 Op 12 . - CDS 66052 - 66198 175 ## EF1424 hypothetical protein 93 23 Op 13 . - CDS 66177 - 66446 261 ## gi|293382362|ref|ZP_06628301.1| toxin-antitoxin system, antitoxin component, Xre family - Prom 66470 - 66529 7.2 + Prom 66510 - 66569 7.0 94 24 Op 1 . + CDS 66589 - 66897 262 ## COG1396 Predicted transcriptional regulators 95 24 Op 2 . + CDS 66914 - 67378 520 ## EF1421 hypothetical protein 96 24 Op 3 . + CDS 67406 - 68002 464 ## LMHCC_1411 GP35 + Term 68008 - 68040 2.0 + Prom 68072 - 68131 7.4 97 25 Op 1 . + CDS 68166 - 68444 266 ## EF1418 hypothetical protein 98 25 Op 2 . + CDS 68444 - 69670 821 ## COG0582 Integrase + Term 69873 - 69906 0.2 - Term 69635 - 69691 5.1 99 26 Tu 1 . - CDS 69782 - 71131 1882 ## COG0166 Glucose-6-phosphate isomerase - Prom 71221 - 71280 7.4 - Term 71261 - 71312 9.2 100 27 Tu 1 . - CDS 71313 - 72659 1636 ## COG0334 Glutamate dehydrogenase/leucine dehydrogenase - Prom 72682 - 72741 5.4 + Prom 72681 - 72740 4.5 101 28 Tu 1 . + CDS 72797 - 74083 1132 ## COG2081 Predicted flavoproteins + Term 74085 - 74125 10.1 - Term 74067 - 74117 15.7 102 29 Tu 1 . - CDS 74124 - 74831 306 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 74916 - 74975 8.0 + Prom 74731 - 74790 6.3 103 30 Tu 1 . + CDS 74874 - 75308 537 ## EF1412 hypothetical protein - Term 75282 - 75330 13.2 104 31 Tu 1 . - CDS 75334 - 76728 1804 ## COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases - Prom 76766 - 76825 8.8 + Prom 76702 - 76761 8.9 105 32 Tu 1 . + CDS 76870 - 77868 1022 ## COG1609 Transcriptional regulators - Term 77832 - 77884 14.2 106 33 Op 1 9/0.000 - CDS 77904 - 79166 1188 ## COG1668 ABC-type Na+ efflux pump, permease component 107 33 Op 2 . - CDS 79159 - 80058 276 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein - Prom 80098 - 80157 6.0 108 34 Tu 1 . - CDS 80163 - 80420 267 ## EF1407 hypothetical protein - Prom 80510 - 80569 4.9 - Term 80511 - 80563 9.6 109 35 Op 1 4/0.000 - CDS 80572 - 82368 1928 ## COG0322 Nuclease subunit of the excinuclease complex - Prom 82395 - 82454 8.2 - Term 82448 - 82501 11.0 110 35 Op 2 3/0.000 - CDS 82533 - 82847 541 ## COG0526 Thiol-disulfide isomerase and thioredoxins - Prom 82879 - 82938 7.1 111 35 Op 3 3/0.000 - CDS 82945 - 85311 2784 ## COG1193 Mismatch repair ATPase (MutS family) 112 35 Op 4 . - CDS 85422 - 85970 514 ## COG1286 Uncharacterized membrane protein, required for colicin V production 113 35 Op 5 . - CDS 85990 - 86433 521 ## EF1402 hypothetical protein - Prom 86465 - 86524 5.5 - Term 86651 - 86688 3.1 114 36 Tu 1 . - CDS 86702 - 88804 2560 ## COG2217 Cation transport ATPase - Prom 88864 - 88923 6.1 - Term 88821 - 88858 1.7 115 37 Op 1 6/0.000 - CDS 88926 - 89930 821 ## COG1118 ABC-type sulfate/molybdate transport systems, ATPase component 116 37 Op 2 23/0.000 - CDS 89927 - 90598 643 ## COG4149 ABC-type molybdate transport system, permease component 117 37 Op 3 1/0.400 - CDS 90607 - 91407 885 ## COG0725 ABC-type molybdate transport system, periplasmic component 118 37 Op 4 3/0.000 - CDS 91426 - 92397 937 ## COG0303 Molybdopterin biosynthesis enzyme 119 37 Op 5 . - CDS 92401 - 92883 244 ## PROTEIN SUPPORTED gi|134277849|ref|ZP_01764564.1| ribosomal protein S16 120 37 Op 6 . - CDS 92876 - 93310 407 ## COG2258 Uncharacterized protein conserved in bacteria 121 37 Op 7 6/0.000 - CDS 93313 - 94278 661 ## COG2896 Molybdenum cofactor biosynthesis enzyme 122 37 Op 8 . - CDS 94284 - 94766 410 ## COG0315 Molybdenum cofactor biosynthesis enzyme - Prom 94840 - 94899 4.5 Predicted protein(s) >gi|284795543|gb|ADDQ01000006.1| GENE 1 41 - 1693 1665 550 aa, chain - ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 2 550 3 549 549 553 52.0 1e-157 MKKLKMMGIMLFVSTVLVGCGTTAETKIDEKATEKTSVSKKVLNLMENSEIGSMDSIFTQ DEASINAQSNVFEGLYQLDEKDQLIPAAAKEMPEISEDGKRYTIKLREDGKWSNGDAVTA NDFVFAWRKLANPKNQANYFFLLEGTILNGTAITKEEKAPEELGVKALDDYTLEVTLEKP VPYFTSLLAFSPFFPQNEAFVKEKGQAYGTSSEMIVSNGPFLMKNWDQSAMSWDFVRNPD YYDKEKVKSETIHFEVLKETNTVYNLYESGELDVAVLTGDFAKQNRDNPDYEAIERSKVY SLRLNQKRNEKPSIFANENVRKALAYALDKKSLVDNILADGSKEIYGYIPEKFVYNPETN EDFRQEAGALVKTDAKKAKEYLDKAKAELNGDVAIELLSRDGDSDRKVAEFIQGQLQETL PGLTINVKTVPLNNAIELMRKGDYELSVGMWGPDYQDPMTFLESSVSGNRMNYSSPTFDQ LIEEATTKYANDPETRWQTLIKAEKVLVEEDAALIPLYQEARSQLVRPGVKGIQYHNFGA TSTYKYAYKE >gi|284795543|gb|ADDQ01000006.1| GENE 2 1711 - 3087 1026 458 aa, chain - ## HITS:1 COG:TM0007 KEGG:ns NR:ns ## COG: TM0007 COG1305 # Protein_GI_number: 15642782 # Func_class: E Amino acid transport and metabolism # Function: Transglutaminase-like enzymes, putative cysteine proteases # Organism: Thermotoga maritima # 5 455 1 438 438 318 41.0 2e-86 MKYDLKYLSVPLPEEIQRVKEFGDFASADIAIDFWLTKELPQALKERLIIEKDVIKMMRM NEYPHSFAKADQMMRDTFQDYQTEELIRLKETGLVDWVYIDGEPYFQLRFLANLIKTNAA YVARLREAESNQLEILRKKELKENIEQMQKNGGRKVRTTIKATIQVKKEFERPGERVRVH LPLPKACQQQSEIEILATSPEATYIAAEDAPQRTLCFETILKENQTFTVEYCYVNRMVYQ QLEENNVDKMQPSFDLEEQLPHIRFTPYLRNLADEIVGDESNPLKKARLIYDFVTTKIHY SFMREYFTISNISEYAATNLKGDCGVQAILFITLCRIAGIPAKWQSGLYVSTHYTGCHDW AQFYIEPYGWLFADLSFGGGAYRDGDRQRWNHYFGNLDVFRMVANSEIQADFQPSKMQLR ADPIDNQRGEFEYENEGLPYACLIVSQERLSMEELPFD >gi|284795543|gb|ADDQ01000006.1| GENE 3 3104 - 4168 1093 354 aa, chain - ## HITS:1 COG:FN1586 KEGG:ns NR:ns ## COG: FN1586 COG4948 # Protein_GI_number: 19704907 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Fusobacterium nucleatum # 1 352 13 365 375 277 43.0 2e-74 MKIKQVHVRASKIKLKETFTIALGTIESADSAIVEIETEEGLVGYGEGGPGIFITGETLA GTIETIELFGQAIIGLNPFNIEKIHEVMDKISAFAPAAKAAIDIACYDLMGQKAQLPLYQ LLGGYDNQVITDITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTGIEADISRVKAIREAV GFDIKLRLDANQAWTPKDAVKAIQELADYQIELVEQPVKRRDLEGLKYVTSQVNTTIMAD ESCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIECMIGCMAEETTIG ITAAAHLAAAQKNITRADLDATFGLETAPVTGGVSLEAKPLLELGEAAGLGISH >gi|284795543|gb|ADDQ01000006.1| GENE 4 4279 - 4380 86 33 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRSISHVMEFTDLLKKLIKLEIHFILIEISLFC >gi|284795543|gb|ADDQ01000006.1| GENE 5 4444 - 4788 579 114 aa, chain + ## HITS:1 COG:L106356 KEGG:ns NR:ns ## COG: L106356 COG2151 # Protein_GI_number: 15672865 # Func_class: R General function prediction only # Function: Predicted metal-sulfur cluster biosynthetic enzyme # Organism: Lactococcus lactis # 9 114 6 110 110 149 73.0 1e-36 MSEQPQQRSTEEVEAIKEDILTALETVIDPELGIDIVNLGLIYEVEFAEETGDTVIKMTL TTMGCPLADVLTEQIHGVLKDIPEVNNIEVKLVWYPAWTTDKMSRYARIALGIR >gi|284795543|gb|ADDQ01000006.1| GENE 6 4886 - 5425 491 179 aa, chain - ## HITS:1 COG:no KEGG:EF1509 NR:ns ## KEGG: EF1509 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 179 1 179 179 351 98.0 5e-96 MQFTLLNQGNQAYWEATYIEAFPEEERLPFDQLLTSSQAGKFHLFVIQEADENVGILLNS QIAPEATYVFFFAIDQHHRNKRLGSTVLALLKTRYPKGVLLESEEIGKNAANEAQREKRY QFYERNGVLDTGYLIMDRGLTFHIMFAGASGFGGTQLQFLLDFHPVAKIWKKPSIDGIR >gi|284795543|gb|ADDQ01000006.1| GENE 7 5638 - 6492 391 284 aa, chain - ## HITS:1 COG:no KEGG:EF1508 NR:ns ## KEGG: EF1508 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 125 284 1 160 160 307 96.0 3e-82 MAEITVKTISAKDDLKKLLLGQEYDQQQPVKNILKARTSNVHIEKYEVVEDVFLKLTGKA TEHKDIMNSFWTTYKIMLQLVYPNFFRPAEVIGENQESYLEKPSEQNLLAVNSKYPPHDS GTSAVISDRYLTYFDQAFPDYLPNPVPKKYTWNEFLLDNFTNFERVHQDPQLKRFAELTH SIGNITVVPIGFNSGRSLSFKDYWDYSLEQLSIFLASFHSWESYVHTYEMQPFLNEQYQP VALWKNHLKKDSFILPQNIEEINEYLVQVNQRIEKRGQRIVNRL >gi|284795543|gb|ADDQ01000006.1| GENE 8 6779 - 7330 326 183 aa, chain + ## HITS:1 COG:no KEGG:EF1506 NR:ns ## KEGG: EF1506 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 173 1 173 177 276 99.0 2e-73 MEMYQVIRYFLNEMEKKIWHALLTLVLFCLYISIFDVPFTIKNTFIGRLLFPKAFMNAGS ANLIFYLISFFGFLWSIFIFAYLLNKTRLKLLNKTFPYLLEILEVCILPLVILFAYIYIY LRVHGEGFSYIRESLLQQELTYSMKWFLCLGSLAPLFFFLSTLNLAKRVRQKKTWDHENP CLF >gi|284795543|gb|ADDQ01000006.1| GENE 9 7327 - 8319 994 330 aa, chain - ## HITS:1 COG:SPy1892 KEGG:ns NR:ns ## COG: SPy1892 COG1073 # Protein_GI_number: 15675706 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Streptococcus pyogenes M1 GAS # 105 320 91 305 308 203 49.0 3e-52 MKWLLGLLIIFAMIGVVFSVYIANYFLKIALLKDNPWYHKKGHRLLNPDNFQERETRYTK IEEQQKQEGEAFWTESFAEDRWLKIKDETLYARCFIPYPDNHRWAICVHGYRSNGKRDMA YTALRFAEEGYNVLVPDLRAHGKSSGNKIGMGWLDRLDLLSWISEVLAIDMEAEIILVGG SMGAATVMMASGEKLPTNVRGLIVDCGYTSVYDEFKYVLHESFHLPAFPILTIANQLALN NYGFQLKTASSVRQLHKNTLPTFFIHGTGDRFVPMTMFEENLAATQGIQKGLIVAKAPHL SSSVYEPENYYSSIFEFLEENCPAVKTTSD >gi|284795543|gb|ADDQ01000006.1| GENE 10 8465 - 9757 1566 430 aa, chain - ## HITS:1 COG:BS_lysA KEGG:ns NR:ns ## COG: BS_lysA COG0019 # Protein_GI_number: 16079395 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate decarboxylase # Organism: Bacillus subtilis # 2 429 3 430 439 531 58.0 1e-150 MLFGTAKMNRENHLEIGGCDTVKLAQKFGTPLFVYDVAHIRAQARGFKQTLNQLGIKNKV VYASKAFSCLAIYQVLKEEDIACDVVSGGELFTALKGGMEPAEIEFHGNNKTPEELRYAL DNKIGTIVIDNFYEIDLLEELLATRNQTQKVLFRVSPGVDAETHDYILTGQEDSKFGFDV ASGQATEALVRLLSNPSFDVQGVHCHIGSQIFAVEGFLAAVEKMFTILEDWRQVHQFTAR VLNMGGGFGVQYTQQDEPLAPATFVEKIVYSLKGHCEQLGYPLPELWIEPGRSLIAEAGT TIYTVGAQKEVPGVRHFVSVDGGMGDNIRPALYQAVYDGFLANRDGHDSVKKVTVVGKYC ESGDVLLRDILLPEVKAGDLLAISSTGAYGYSMASNYNRNPRPAVVFVEDGQAKLVARRE TYEDMTTLDC >gi|284795543|gb|ADDQ01000006.1| GENE 11 9792 - 9890 59 32 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPIIVGYLAKKSNRRKSEKNVENYRKLLGFML >gi|284795543|gb|ADDQ01000006.1| GENE 12 9973 - 11853 1566 626 aa, chain + ## HITS:1 COG:BS_fbp KEGG:ns NR:ns ## COG: BS_fbp COG3855 # Protein_GI_number: 16081071 # Func_class: G Carbohydrate transport and metabolism # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 7 619 47 662 671 664 53.0 0 MATLNRDQQIEEIINLEAILNLPKGTEHFVSDLHGEFEAFDHILRNGSGRIREKVQFLFK QELNAHQMDELCFIIYYPEEKLTLLENESALSYEWWLLTIRRLVEIVRSSSMKYTRSKVR KALPETYGYILEELIYQYDETTTKNGYYQQIIEKIILLGEAKRFVTELAYLIQRLIIDHL HVIGDIYDRGPAPDKIMDRLMSYHSLDIQLGNHDMIWLAAYSGSLACLANVVRICARYGN LDLLEERYAIDLTALKKFSLETYKENPAFAPKKNPYRALTEDEKQVAMRVQQAITIIQEK LEGQIIGRRPDFNLAHRLRLDKIQGETITFDECRYTLINSCFQTVSEEQPYQLTREEKQI IDDLLTQFQSSPRLTKHMRFLMEKASLYLVYNQNLLIHGCLPLNADGTFQAYTFKGHSYS GKALVDFFQEMLEEAYAQPASTDDYATDCLWYLWCGEGSSLFGKRAMKTFERYFLAEKET HYEEKNPYYSLRDTVEVCERILDEFEVTGENRHIINGHTPVKRTKGESPIKANGTLLVID GGFSKSYQTITGIAGYTLLYNSFGLQLTAHKSFSSKETAILNNQDIHSIKQVIDRPLQRL LVKDTTIGKELLKQSQALQKQMKQNQ >gi|284795543|gb|ADDQ01000006.1| GENE 13 11948 - 12889 899 313 aa, chain + ## HITS:1 COG:all4822_2 KEGG:ns NR:ns ## COG: all4822_2 COG2367 # Protein_GI_number: 17232314 # Func_class: V Defense mechanisms # Function: Beta-lactamase class A # Organism: Nostoc sp. PCC 7120 # 82 299 69 298 314 64 25.0 3e-10 MKKQQLSLYGTIFFLCFFLIVGFFFSSRGEDYAKESEQKVTIDSAKHEKHTKDKEENNSA NTVFFDKINDLLVASVKEFEGTVGISYLDLETGEQRSVNGQHEFYTASTIKVPLTMLVAD TVSSGQKKWTDLIPYNAEEDYEEGTGIIAYNIQPEYPLKTLQEYAITYSDNIAKNMLYDT LGGDAKAKREMYQRYLHKTPSIEEPQFSSEDALVILQKLYTEKATKPDYQAIYDSMKQSV FHERMETPTTQGKVAHKIGSYDEFIHDMGILETPHPFALAIFTKGPDNAKSAAFIASVTD KLWQLQVSEYPNQ >gi|284795543|gb|ADDQ01000006.1| GENE 14 12944 - 13354 507 136 aa, chain - ## HITS:1 COG:no KEGG:EF1501 NR:ns ## KEGG: EF1501 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 106 1 106 106 196 99.0 3e-49 MKNEERRKAIALNCQKYESDYARLVEPINELLLNLGATISEEAAKQIILNVKRYHHGVKY LPECHLDESNQFIEDGLEALKKGDLGNGALQLFGAGLNFASFAAKAQGTKKIDAHQMLAE RFTKLLSVQTDNNNKQ >gi|284795543|gb|ADDQ01000006.1| GENE 15 13429 - 14064 720 211 aa, chain - ## HITS:1 COG:FN1733 KEGG:ns NR:ns ## COG: FN1733 COG1394 # Protein_GI_number: 19705054 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit D # Organism: Fusobacterium nucleatum # 1 207 1 206 211 196 56.0 3e-50 MARLNVNPTRMELSRLKKQLTTATRGHKLLKDKQDELMRRFIALVKENNELRIQVEQEVT DALSNFVLANATLNEAFIEELVAIPAEKVELEIIEQNILSVPVPKMIFDYDESVQEAPLD YGYVNSNSELDQAFAKISSILPKLLALANVEKTCQLLSKEIEKTRRRVNALEYMTIPQLE ETIYYIQMKLEENERGEITRLIKIKSMNKEN >gi|284795543|gb|ADDQ01000006.1| GENE 16 14069 - 15445 1940 458 aa, chain - ## HITS:1 COG:SPy0155 KEGG:ns NR:ns ## COG: SPy0155 COG1156 # Protein_GI_number: 15674363 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit B # Organism: Streptococcus pyogenes M1 GAS # 1 454 3 456 471 763 81.0 0 MIKEYRTINEVVGPLMIVEKVAGVKYEELIEVRMQNGEIRQGQVLEINGDKAMVQIFEGT SNINIRDSKVRFLGHPLELGVSPDMMGRVFDGLGRLKDNGPELLPEKKLDINGEVINPVA RDYPDEFIQTGISAIDHLNTLVRGQKLPVFSASGLPHKELAAQIARQANVLNSEEEFAVV FAAIGITFEEAEYFMEDFRQTGAIDRSVLFMNLANDPAIERIATPRMALTAAEYLAYEKG MHVLVIMTDMTNYCEALREISAARREVPGRRGYPGYLYTNLATLYERAGRIRGSKGSVTQ IPILTMPEEDKTHPIPDLTGYITEGQIILSRELYKSGIQPPIDVLPSLSRLKDKGTGEGK TRGDHAATMNQLFSAYAQGKQAKELAVILGESALSDVDKIYAAFAQRFEEEYVNQGFDTN RSIEETLDLGWELLSMLPRTELKRIKEDMLDQYLTEGK >gi|284795543|gb|ADDQ01000006.1| GENE 17 15438 - 17219 2083 593 aa, chain - ## HITS:1 COG:SPy0154 KEGG:ns NR:ns ## COG: SPy0154 COG1155 # Protein_GI_number: 15674362 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit A # Organism: Streptococcus pyogenes M1 GAS # 1 590 1 591 591 854 71.0 0 MQIGKIVKVSGPLILAENMSDASIQDICHVGDLGVIGEIIEMRGDVASIQVYEETTGIGP GEPVISTGEPLSVELAPGLIAEMFDGIQRPLDTFQEVTHSNFLGRGVKIDALDREKKWTF EPTVSVGEEVSAGDIVGVVQETPIIQHKIMVPFGVSGTIAEIKAGDFAIDETVYSVETAK GTESFSMMQKWPVRRGRPILEKLSPKVPMVTGQRVIDTFFPITKGGAAAVPGPFGAGKTV VQHQIAKWADVDLVVYVGCGERGNEMTDVLNEFPELIDPTTGESLMNRTILIANTSNMPV AAREASIYTGITIAEYFRDMGYSVAIMADSTSRWAEALREMSGRLEEMPGDEGYPAYLGS RLAEYYERAGQVIALGKDHREGSITAISAVSPSGGDISEPVTQNTLRVVKVFWGLDSQLA QKRHFPSINWLQSYSLYSTEVGQYLDLELQGNWAAMVAEGMRILQEESQLEEIVRLVGID SLSDKDRLTLETAKSLREDYLQQNAFDDVDTFTSRTKQAKMLQLILTFGEEGQKALSLGT YFSELMAGTVEIRDRIARSKYLPEEELEKLDRLQAEIKTTIKEIIAEGGMTND >gi|284795543|gb|ADDQ01000006.1| GENE 18 17237 - 17548 391 103 aa, chain - ## HITS:1 COG:FN1737 KEGG:ns NR:ns ## COG: FN1737 COG1436 # Protein_GI_number: 19705058 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit F # Organism: Fusobacterium nucleatum # 3 103 5 105 105 99 48.0 1e-21 MGYKIGVIGDKNSILPFKLFGFEVHHAISEMQVREAIETMAKNKFGVIFITEEASTLAEE TIERYKEQVTPAIILIPSHNGTIGIGLSEIEKNVEKAIGQNIL >gi|284795543|gb|ADDQ01000006.1| GENE 19 17538 - 18539 1160 333 aa, chain - ## HITS:1 COG:SPy0151 KEGG:ns NR:ns ## COG: SPy0151 COG1527 # Protein_GI_number: 15674361 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit C # Organism: Streptococcus pyogenes M1 GAS # 4 330 2 331 332 122 29.0 1e-27 MRKPTYHQINPLIRLKETELLSEQQFQQLLEAETVEDVKNMLKSTVYQPYLTETFEEKFD YHSSEALGSLYRWLYEMAPEPAVVTLYTMRFTFHNLKILTKAERTGKDFDYLYLEDGRYS LNTVKSAIHTKNSSELEPALLEVIRDVFAYLEEGGLPQAIDILYDRAFLQQQRKLADELG YEELTKEVIAFIDLTNLSTMARGIVQHQNSNFLSTVISSAGSLSKKELLTYAEKSLVEFT AFVRTTNYGQLLEKIINKETNELNLLAFEKLKDDYLTSMYENGRTVAFGPLPLLAFLNAK EVEWKNLRLILVGKHSGFSNEKIRERMRKVNGV >gi|284795543|gb|ADDQ01000006.1| GENE 20 18556 - 19137 871 193 aa, chain - ## HITS:1 COG:no KEGG:EF1495 NR:ns ## KEGG: EF1495 # Name: not_defined # Def: V-type ATPase, subunit E # Organism: E.faecalis # Pathway: Oxidative phosphorylation [PATH:efa00190]; Metabolic pathways [PATH:efa01100] # 1 193 1 193 193 252 99.0 6e-66 MDAIEKIISEIKQQGKQEVEAYVTSEQTRIDQEFQAAQQEILLKQEHEIEKRQQQLLKEF KQRQQRQTLEIRQYALNKKQAYLNQLFDEVVLKMSEWSAEEFQQFMKAQLGSLELTGKAT ILLGEYSQTKVTQEWLTALSDATVQWELSEEVVPKESGFIVAKDGLDYNFLFSALVEEIQ KTEGFKVAEKLFS >gi|284795543|gb|ADDQ01000006.1| GENE 21 19154 - 19627 767 157 aa, chain - ## HITS:1 COG:SP1321 KEGG:ns NR:ns ## COG: SP1321 COG0636 # Protein_GI_number: 15901175 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K # Organism: Streptococcus pneumoniae TIGR4 # 10 156 12 158 158 142 60.0 3e-34 MMDYLINNNGGIVFAVLGMAMATIFAGIGSAKGVGFTGEAAAALTTEQPEKFGQALILQL LPGTQGLYGFVIAFLIYINLGNDMSMVQGLNYFVAALPIAFAGLFSGIAQGRVAAAGIQI LAKKPEHATKGIIYAAMVETYAILGFVISFLLVLNVK >gi|284795543|gb|ADDQ01000006.1| GENE 22 19655 - 21634 2045 659 aa, chain - ## HITS:1 COG:SP1322 KEGG:ns NR:ns ## COG: SP1322 COG1269 # Protein_GI_number: 15901176 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit I # Organism: Streptococcus pneumoniae TIGR4 # 1 659 1 662 663 357 35.0 3e-98 MAVSKMEKMTIIAAAEKEAAILQAIQGLQIVEVKRIFHSPEEEQALKSQYSFLQAEQSTE QLRKYETMLQQLQELLLFLTRSSGKGLKIKRKVYTLEELEQTFDEETLQSYLTELKNIQE SLKQIQTDRQGLETEEELLGRWQYLDVLPHKQQLKSSYVVHGSINLANKASFLSALSQWP TVYFEEIYQSMHHSYFTLVYLKEHQQSVTELLNQYSFEPLQYRYDVPPKEAYQQVKERYE ILQKEEKVLKQQLASYHDFYETFCLAEEVLLAVIQREQARQHLLNASSFFILQTWIPVEE KADILTAIEEKVPKDEIALTFENPTKAEIETDIPVKLANNKLVQPFEMLTEMYSLPKYEE VDPTPAMMPFYLVFFGMMVADIGYGLLMLLLSIIALKAFVLPRGMKRFADFFLILSFPTI IWGFIYGSFFGAALPPTMFGIKSPFPILSTTEDVNTILILSVIFGFIQLVVGLMINGIQL SKQKRYLDSINESYAWLGILFGLALLVVGKLVVKNEGLFTAGAILASLSAIAIIVIPMIQ SKAKLKGLAKGLYGLYGVTGYVGDLVSYTRLMALGIAGGSIASAFNMLVEFMPPVARFSV GILLLIVLHALNIFLSLLGAYVHGARLQYVEFFGKFYTGGGRAFNPLKTKEKYVNVEKK >gi|284795543|gb|ADDQ01000006.1| GENE 23 21624 - 21947 501 107 aa, chain - ## HITS:1 COG:no KEGG:EF1492 NR:ns ## KEGG: EF1492 # Name: not_defined # Def: V-type ATPase, subunit F # Organism: E.faecalis # Pathway: not_defined # 1 107 1 107 107 112 100.0 4e-24 MVQEVLEQIKAAEDAVEEHRQQAKMNCRLYEEQKQERLAELRQESEEAVEKVLTDSLATQ EKMLQLEKEQLLDETKRTEQALHERYEANKEQVIDSIIERVKDVYGS >gi|284795543|gb|ADDQ01000006.1| GENE 24 22320 - 22763 543 147 aa, chain + ## HITS:1 COG:SPy1984 KEGG:ns NR:ns ## COG: SPy1984 COG1780 # Protein_GI_number: 15675774 # Func_class: F Nucleotide transport and metabolism # Function: Protein involved in ribonucleotide reduction # Organism: Streptococcus pyogenes M1 GAS # 1 145 4 144 160 139 47.0 2e-33 MNIRYISISGNTRSFVQRLTTYAEEQHQHNEKNPTITFKEISENSPLEVETEPFFTFVPT YLDGGDGINNGNTEILTEVMREYLAFENNYRYCSGVVGSGNKNFNHQYCLTAKQYAEQFN FPFLADYELRGTQADIERIYATLMKNQ >gi|284795543|gb|ADDQ01000006.1| GENE 25 22822 - 23001 246 59 aa, chain + ## HITS:1 COG:no KEGG:EF1490 NR:ns ## KEGG: EF1490 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 59 1 59 59 85 100.0 4e-16 MRNTWLAEQLQSISEEPNSFIIEETIKYIEQLEDDNESLQVALEGTIWSPKKWNEPLEK >gi|284795543|gb|ADDQ01000006.1| GENE 26 23067 - 23132 66 21 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFALLGKPGFEELAKDLNARL >gi|284795543|gb|ADDQ01000006.1| GENE 27 23367 - 23615 267 82 aa, chain + ## HITS:1 COG:no KEGG:EF1489 NR:ns ## KEGG: EF1489 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 82 1 82 82 134 100.0 1e-30 MKTNYVGVVDKIRMLSMYPKMLVRFSLVTQDETINCIVSKNELANTLLMLPERSELAVYG HLNKRNQLVIEKMLVRKSLISA >gi|284795543|gb|ADDQ01000006.1| GENE 28 23719 - 24882 658 387 aa, chain - ## HITS:1 COG:no KEGG:EF1488 NR:ns ## KEGG: EF1488 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 387 1 387 387 649 100.0 0 MNNLIFSDMEYIFVFDYYDTPLFFISRSRKNNNYYLFYSINDDVYFYSELSASDINYLFS NPNGYDILHYLKKKSKLNFVMVNNNSFDIYSLAEYTNIFNEDISEALPLEKYPIEFDLVH KLDFEDIRINYKSYFPNVYANDQLTLRIKNKENSSSLNIDIVYSALEFIRSTWQDLSQRH AELGTQKKLLMSAPSRGSLKLDFELEKDQQTGLFTDEASFSELIDFVDNLAYIPMYDEEE LFNERKLIEETAKLYKVIEENDLSIDLISNQVKLSNIKKSEKIKRNLDVMLSSVNDQINE RNVLTEEIEIEGEVLAANKSKNYFKIRSLAHGDISGTFERTLFKQIKTSEVQITISKSIH AYITKEQITDIDTNETKIKYTLNSFTQ >gi|284795543|gb|ADDQ01000006.1| GENE 29 24875 - 25279 258 134 aa, chain - ## HITS:1 COG:no KEGG:EF1487 NR:ns ## KEGG: EF1487 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 134 1 134 134 241 100.0 4e-63 MEKWGYSLLKFDNYPESCPPAEAIPFDGVFFRLCKGENFCEEDFLTHFEAGKSFPDKKLC EAMALSFFDSYDHAEKLKKRFRKKFATCSIKPVAIIEDYGVGIFEENSGHLNLWEHRNVD IFADLMKEDKGKDE >gi|284795543|gb|ADDQ01000006.1| GENE 30 25582 - 26688 1243 368 aa, chain - ## HITS:1 COG:SP1937 KEGG:ns NR:ns ## COG: SP1937 COG5263 # Protein_GI_number: 15901761 # Func_class: R General function prediction only # Function: FOG: Glucan-binding domain (YG repeat) # Organism: Streptococcus pneumoniae TIGR4 # 51 197 26 172 318 90 37.0 6e-18 MKKFSKFLLSLVVVTGLLLPTAADAYQVEQDPIDFGGYFPGYATNELIVLHESGNGNNVG LNSLDNETAYMKRNWTSAYVSYFVGSGGRVKQLAPVGQIQWGAGATANAKAYAQIELART NNKETFKKDYAAYVNLIRDLATQIGATFDLDDGTGYGIVTHDWITKNWWGDHTDPYGYLA QWGISKAQLAQDLQTGLPEDGSEVIVNPGKPNKPKYKVGQHVRFTTIYKNPDAPISQHIN ANTLWTQVGTITQKINGRKNLYRIENSGKLLGYANDGDIAELWENSKPTPAKTFTIGVNE GIVLRTGSPSLYAPVYGVWPKGAQFRYDSVRVADGYVWLGGSDSNGTRICIPVGPNDGNP DNTWGTGY >gi|284795543|gb|ADDQ01000006.1| GENE 31 26747 - 26944 243 65 aa, chain - ## HITS:1 COG:no KEGG:EF1485 NR:ns ## KEGG: EF1485 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 65 1 65 65 113 100.0 2e-24 MKINWKHKFTSRKFWAAVTGVIIALLAVFNVDDLTSEKVVTLVAAIGLLAAYIVGEGFVD SNRDN >gi|284795543|gb|ADDQ01000006.1| GENE 32 26941 - 27297 292 118 aa, chain - ## HITS:1 COG:no KEGG:EF1484 NR:ns ## KEGG: EF1484 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 118 1 118 118 187 100.0 1e-46 MELEQKVKEHEKRLGDHDREIGRLDRRTMTLQEQLNANLVRLDESNKFLREQNMKQMEQN SEILNAILNRNSEADERKDELKKLNTENIWKVILAIFVSSGAITILFNWLSTFLGGAK >gi|284795543|gb|ADDQ01000006.1| GENE 33 27302 - 27430 262 42 aa, chain - ## HITS:1 COG:no KEGG:EF1483 NR:ns ## KEGG: EF1483 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 42 1 42 42 73 100.0 2e-12 MFTFDDVKLMYDWGLYTDDEVKLFVPTCITEEEFNEIVGKEG >gi|284795543|gb|ADDQ01000006.1| GENE 34 27430 - 27864 368 144 aa, chain - ## HITS:1 COG:no KEGG:EF1482 NR:ns ## KEGG: EF1482 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 144 1 144 144 247 100.0 1e-64 MKKIWKYGRTGGQELQVSDDFPMQVPFTDVVPLPTVNLEDQFFIPSENRWKEISNQLDKE NLDNLSILYKNLEKDNELLKAKADNLALLNSKLMLNDLNIQKENTLLKAKANDLAEIGAK SMLSIVQITGEIGKINEQLKGGAK >gi|284795543|gb|ADDQ01000006.1| GENE 35 27886 - 29529 1171 547 aa, chain - ## HITS:1 COG:no KEGG:EF1481 NR:ns ## KEGG: EF1481 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 547 1 547 547 1055 100.0 0 MKFTKELPVWLAPGIKPPESLTSDGWKASQKPPADYFNWFFSRTHGALKELQDSATHIED FNAHKSNISNPHAVTATQVGLGNVLNQKQATKSEFDAHDQDNIRHITDVERNSWNGKAEK NHTQPWSTITGIPDSTITKKGIVKLTDSVTSTDILTAATPNSVKQVNDNANAAMASASSV NDNLTSHKIDYKNPHKVTSAQVGSYSKTETDNLFINKSDAENGLLVRKSIEITDLNNAKE PGIYSIPATGVENKPLPNSGSLFVSKDPGGVRQLFQTERTIVIRQFGGIPSKWTDWKEVA FKPNVVNLTEPQRIGGTKEFADIPLVNGTEIALKEDIFFYQKTGLDEVQADYKASFREET NMFLTREGNRVDAYLRVNVVDVTKLKTAFVPIFQIPDGFKIDLSMRESFWNVPLTVTQYT YPQGNYGALYEMNVKGIRFGSDRLGNHYLYGSWHTNDPKPDAKFKYMLYVNLYNLSEGRD FVSGSYKGEIYYVAVEIDGQLGEKLKVSDGFYKYTVGTKINKASQNAWVIGYDQSGTEVT RSKIKIL >gi|284795543|gb|ADDQ01000006.1| GENE 36 29548 - 30177 423 209 aa, chain - ## HITS:1 COG:no KEGG:EF1480 NR:ns ## KEGG: EF1480 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 209 1 209 209 404 100.0 1e-111 MTKKLRDYLPDLFNRENSNISKLLEIIEFEIKDLTDLLNKVANWRSIDEARGKGLDELGA NVGQARGKTTDEIYRVLIRGKVARNTSDGSIDKMLHAIATSLNCHPSDIHIISANETVDE KEPACVIIKKAPLDYLNSSGLSISQFLQIVESISAGGIRVAYVNLEGTFSFSSTTDIEIS KEGFADIDGNIGGTLGGVFIPENDYKLPL >gi|284795543|gb|ADDQ01000006.1| GENE 37 30161 - 31315 943 384 aa, chain - ## HITS:1 COG:lin1710 KEGG:ns NR:ns ## COG: lin1710 COG3299 # Protein_GI_number: 16800778 # Func_class: S Function unknown # Function: Uncharacterized homolog of phage Mu protein gp47 # Organism: Listeria innocua # 1 379 1 379 383 393 54.0 1e-109 MLDENGFKRKTYDEILYDMSEKAKALFGSDVNVSGHSVLGIIIRIVAWFLSISHELTERV YYSGFISQATGVSLDRLGANSGIYRNPATVAMVELEFSGKPGYIINEGVRFSTENKVMFQ MIDIVKIDDNGFGKGRAISLEENASSNVPANTIIVQVEPTEEISSVNNPARAEGGAERET DKAYRDRIGISVRGNPGPPINGILTALLEVSGVRTASVVENKTMETDSYGNPPKSVHVHI LGGVKDDIGQAIFKSVAAGIDTVGNQEVEVKDLGGFSHIVKFDYAKSVPIFVNISIQVDS KFEKNGQEEIKVIVNNYINNLTMGEVVRFSYIYPLIYQIPGVVVADVKIGLSTETTEVKD INLNPNESAECKTENVVITSDQKA >gi|284795543|gb|ADDQ01000006.1| GENE 38 31308 - 31655 330 115 aa, chain - ## HITS:1 COG:no KEGG:EF1478 NR:ns ## KEGG: EF1478 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 115 1 115 115 185 100.0 3e-46 MRDLKIVNGDLSFIDYGILLVEGDLELAQSVFMILSIRLEEFKLDTSVGLESDNMFGKNY NEDYLKQDITEAILDQEPRINSIENIEIVRNNRQLNITVEMLSTLGDEVEVVIRA >gi|284795543|gb|ADDQ01000006.1| GENE 39 31655 - 31987 252 110 aa, chain - ## HITS:1 COG:no KEGG:EF1477 NR:ns ## KEGG: EF1477 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 110 1 110 110 202 100.0 4e-51 MKETDLAFFRSFKNRILKEINVMQLCRVVTVKGARADVQPMALKSDGGKRALILNALITK HCQSDISQGAVVVVVFCDRDIDNYRSSADYSLSSDRMHSQNDAVIMGVIA >gi|284795543|gb|ADDQ01000006.1| GENE 40 31987 - 32817 559 276 aa, chain - ## HITS:1 COG:no KEGG:EF1476 NR:ns ## KEGG: EF1476 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 276 1 276 276 546 100.0 1e-154 MGNTQWQRLLQIEIHDKNGKNRVLLRADSGRLDRLEIHFTAPFSDSPNPSEVSVTIYNLN KKSIDFIKKGNPVYIHAGYAGTSNGVITSGTIAEVKPSVLNGVDRATTFTFLEGKDYSEQ KEVNITFNNGTDAHTIINRVAREANIPLSEIKLKNNKIYGSGYTADGQAMMVLEEISKAC DTSLYFKRGQLVIKNFRDGNKERYRLSPETGLINQPTKVESHDYTGWSVECLLQHKITTG TAVYIDSKNVKGNFYVKNGQHSYDGSRFVTTCEVVT >gi|284795543|gb|ADDQ01000006.1| GENE 41 32818 - 33180 327 120 aa, chain - ## HITS:1 COG:no KEGG:EF1475 NR:ns ## KEGG: EF1475 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 120 1 120 120 220 99.0 1e-56 MSLRAYIPIDKYSLPEKFEIPLGNTNYIFEVDYNQTEKFFTVDLYDIDHTPIAIGERMVI DEKLWQDIVDTRLPSADLVPMDESGASKEITFENFGIQVFLYIDDLPPNYNVPSLEREDN >gi|284795543|gb|ADDQ01000006.1| GENE 42 33190 - 33747 632 185 aa, chain - ## HITS:1 COG:no KEGG:EF1474 NR:ns ## KEGG: EF1474 # Name: not_defined # Def: LysM domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 185 1 185 185 333 100.0 2e-90 MGYIQSGKSKVEIVNVSETVTSAANVSQYPVESGAPITDNMMYTGGPVTISGWILAKNGN AAEQAYNTLVAWQKDVRWIVYRGRSYFKNAVIQDISKGYDTVENGFTITITLQPIRVAKT IWEKIPQPPVAKQPSKPSNAVYVTVQPGNTYWGWWQQYGTSIQQLRDWNKWPDRFIPIGA RARVK >gi|284795543|gb|ADDQ01000006.1| GENE 43 33747 - 38915 4821 1722 aa, chain - ## HITS:1 COG:lin1716_2 KEGG:ns NR:ns ## COG: lin1716_2 COG0739 # Protein_GI_number: 16800784 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Listeria innocua # 1279 1507 10 225 340 149 42.0 3e-35 MADALRSSVIELDWKINNRSLERANEETDKILAKAARMEGTYQNSAKSIDGATTSLKRNS EGLKQNTDKVVQFGNRAKDSMQKTTNSAKQTEKQVKDVGSQFDKSKNSASVFAQSSATSL KVVGKAAKGVQTSIGRIGDYATKASDVTWRAFTKIRNGAMIAGAGIVAIGKSAFDAASDT NEALNKVEVAFGDNNKEVKKWSKNTIDSIGLAQGTALDLAATYGDMSTSMGIGTKEAANM STSLVDLAGDLASFKNIGIDRVNTALNGVFTGETEALKGLGIVMTQTNLEQFAMASGALQ SSVDNSKAAKNAMAREKAQDRLNKAIKKHGENSIEARDAQLKLTEAESKGEEVQQAKLDS LSQEELVRLRYNYVMSKTKNAHGDFARTSDQAANASRVFNESLTELKSNIGQHLLPIFTP LILKATKFVRKGDQLKEKINDIGQQVEPTAKQVMKHFGQAKDYFVDEIIPTAKKVGKAIG PGIAEGAKNMFNVMDKGFKYIIKPSIRILKEFTDENPVAMKQVGKWATYGIGGLLGFKLV GKPLLGVSKGILGIIGKLEKLGNTAQREAFKTRKALEDVDSAAQKASTPTHTTASPNIQE SLPVGSVGKIGKGAKLFGGVRRFAKSVPLLSYISAGLTLTQINKNNKFEKIGDSLGSIVG GALGAKAATLAGAKLGAVAGTTFGPIGTVIGGILGTAAGSSFGSVLGKKLKENWPEVSAM IGKLWDTYKKVPFYGQIAQAVESGIVHGAKSGKRIIEEVKEFFQKPFNANNVKPEKGVSK NSAKRVNSYLKNYDKIISKDTESKIAGRVLTDEEIAERNKILSDMEKQVTDRLEGKKNKS YKNIDKLSELGILSDKDVQSAKAVSTELATFRKRAYSDNVNELKKLEKEEHDAGIQAAER YTARINAIKEKARLENRELSKSDLEEIESNEKSAAAATRVVQEEYAQKKAALNENMKRQA VGALSESAKEQKIIMGNLKNTSGEISAQQAADIVSASYKAKEGAIKSANEKYAETKRILD EERYVNGTITQAQYEEALKKAQEQRDGVVSQAEKQHEEVVTQAKKQAEGHLEQVDWETGE TLSKWDVFKKSSKKKFKEIWDGTVEGAKSFGKAFGEAMDKVVSGALETWDNFKTGLADKV NAVTGGINVVLDFFSIPKIPEWKPNTPNSTKNKHGRSFSTGSRGASYSGQALVGEEGVEL AYNKSTSSMRLLGSNGPEVTNVTSGERILNHSDTKAVLNGGMGQGTVLPGFHKGKGNGLS DFVDSAKDFGANTVDKLKDFGSNAVDKAKEVGTKAIEKTKDIAETAKDWLSDPIGKVTGL FNKHNTYKKGKNIQGLGHGVMNKLKDTSSEWVKNKLEAFKGFFDSEDGGAFGSGAFAPHF GSPFVRTSDYGKRPGLYGDFHTGIDYAAPMGTPIPAQHPGLVDWVQSSSIGLGEHVGVKV ANNLWAMYGHMSRIRAKKGEQVKAGQIVGDVGSSGWSTGPHVHYELRKGGPNGQHVNPDT YGGSVGGVAVGAAGWGPQVRKAAKLMNQGITDSQVNGILAQIQLESGGNQSAIQSLSVDD INARTGNLARGLLQYTPTTFEGFKVRGYENIMNGFHQLVAFFNNSNWQNDIQYGRSGWTP NGHRLRAYAKGGRPSKGETVLVGENGPELFEADTAGTVHPHEKTKALFNQGSPSVNFSPN ITINVGNNSDKSVVGDIKEAVRQALEDEYAKLLNILGTGEVV >gi|284795543|gb|ADDQ01000006.1| GENE 44 38918 - 39058 106 46 aa, chain - ## HITS:1 COG:no KEGG:EF1472 NR:ns ## KEGG: EF1472 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 46 21 66 66 85 97.0 6e-16 MFRWLPVIAGIATKDEVEIATAEELAVWNEVAYQKINLTKSRGGVI >gi|284795543|gb|ADDQ01000006.1| GENE 45 39099 - 39431 473 110 aa, chain - ## HITS:1 COG:no KEGG:EF1471 NR:ns ## KEGG: EF1471 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 110 1 110 110 211 100.0 7e-54 MTKKDEVKELEVKNNIPEAEKKPFNKFGKQEKHTVEDVEYTFQFPGTRAAQAILDNSKGP SNTFSDVAYHSQLMDSVIVTPKLNWDYWDEHEGYREVMALADNFLGRMLN >gi|284795543|gb|ADDQ01000006.1| GENE 46 39484 - 39882 513 132 aa, chain - ## HITS:1 COG:no KEGG:EF1470 NR:ns ## KEGG: EF1470 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 132 1 132 132 234 100.0 5e-61 MQSMTTYDAKEVSTIIDNVVQFGFQDGDMVSFSKDNSYIEVQTDAQGQSSAAKNNDNLGT FTINLSQNSPCNKQLMALANGRKEFAISVTHSTEKAWASKAYIEKTPDGSFGKGVPTRSY TIKALDYKHEYN >gi|284795543|gb|ADDQ01000006.1| GENE 47 39898 - 40935 1300 345 aa, chain - ## HITS:1 COG:no KEGG:EF1469 NR:ns ## KEGG: EF1469 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 345 1 345 345 633 98.0 1e-180 MIEKITDVNVKIDIMHPQPIVGLGNPAIFVQGSTQNYKEYTSLETLAKDFATTTTVYKKA ETIWKQENKPQTIAVVTFAADTPTSPEQPDSLIAGSGIIAAATSYFYNDWHFALLANFVE ADALALSNLIEENEFKFLVIQTATVDELTVFAGNNLTIGLAHPLEEFLDAALIGNTASLT VGSVTWKFRHNLVGITPNTLTTSQLQAIEKANAIAYVSKAGIPQTSEGKTMSGEFIDALH GDHWVKSNIETNVQRLLSTTDKLTFDSNGIALLDTTVANVLETAFNNGIVDIVDETGVGN YSVTALGRQDLNPDDIAARNYKGLSFKYKRSGAIHTVDVTGTIEV >gi|284795543|gb|ADDQ01000006.1| GENE 48 40932 - 41408 375 158 aa, chain - ## HITS:1 COG:no KEGG:EF1468 NR:ns ## KEGG: EF1468 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 158 1 158 158 283 96.0 9e-76 MPQINGTFSYELLADELIAIVKKSTGLQLIESSTAGPQPDKPFFSYEVISPYIPVTIDVT DNEVFELVVSIKCHTDSSIQALNLSEQLRKHLNGFSVKVDLQNSKIALVSTTQSKKRDNF ISVDYERLAGFDARFRVQDSYVDNAVIIENIELQEENK >gi|284795543|gb|ADDQ01000006.1| GENE 49 41395 - 41754 311 119 aa, chain - ## HITS:1 COG:no KEGG:EF1467 NR:ns ## KEGG: EF1467 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 119 1 119 119 233 99.0 1e-60 MQRMNFSSLIETFAVDFQLVLPSVEGAGKYIHGEWFPTNEEPKTVSGAIIPYDNRTIYQS GGTLTSSDRQLAYVGSIPLGSKIIDMGKEYKVESEEPYAEHYADVNLYRLKAVTNNATN >gi|284795543|gb|ADDQ01000006.1| GENE 50 41754 - 42251 214 165 aa, chain - ## HITS:1 COG:no KEGG:EF1466 NR:ns ## KEGG: EF1466 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 165 37 201 201 306 97.0 1e-82 MAMLAQVHEFGVTIRPKGRFLVIPLMKKYRGKSPRQFDLFFMQTKENHKFLVRNKGKDQL EFAYMLAEQITIPERSFIRSTFDELEKAWSDYALNLVKKLIAGKMTAEELTNKVGARMQR DIQRTIRNLSYPPNSPITVNNKKSSNPLIDTGKLRQSVTYKVVKG >gi|284795543|gb|ADDQ01000006.1| GENE 51 42356 - 42697 242 113 aa, chain - ## HITS:1 COG:no KEGG:EF1465 NR:ns ## KEGG: EF1465 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 113 1 113 113 218 100.0 5e-56 MPKSTVENVRLTAAELVGVNNDSIKLFIDDAWLEVDALPFKEEVKEKACRYLACHLAVLN NQNTKSEQVGSLKKEYSGFHSTFTDLKRTVYGQEYLRLYNEYAKKGSLSLVVI >gi|284795543|gb|ADDQ01000006.1| GENE 52 42709 - 43095 523 128 aa, chain - ## HITS:1 COG:no KEGG:EF1464 NR:ns ## KEGG: EF1464 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 128 1 128 128 165 82.0 4e-40 MLVHNKGKFIRHIGDVRLIPGMNELSSSDIETFTKGMEVPLNKALENQGEIEILDQPQKG KTKNSVGFSELAANKAVESIADTFDLELLEKWLEEEQANKNRTTVVKAIENQIDDIKNPD EDSVVNPE >gi|284795543|gb|ADDQ01000006.1| GENE 53 43110 - 43991 938 293 aa, chain - ## HITS:1 COG:lin1726 KEGG:ns NR:ns ## COG: lin1726 COG4834 # Protein_GI_number: 16800794 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 293 1 301 301 303 51.0 2e-82 MGNDVTATLEARDLQAIDKVIYQAPQEELVARTMFNVKTDINPGAETYGYYVMTRSGAAK IIANGADDLPLVDIDMKRYQSPIFTIAAGVRYSRQEIRQAQMMGTSIDATKAEVARRTIA EKENSFVFVGDPKVNHKGVANAEGIQVINSAKTWKTMTSDEIVEQLRTSRAKITIIPGFK SANLKLMIAPEQFEELNRRYSDYDSRSIMKVVQENGWFSSIEQVYDLKGVGTNKTDSFII MDTKPSTCEILIPEDIVRLEVEWAYPNWKVPFEERCGGALIRTPYAIVRVDGI >gi|284795543|gb|ADDQ01000006.1| GENE 54 44013 - 44483 849 156 aa, chain - ## HITS:1 COG:no KEGG:EF1462 NR:ns ## KEGG: EF1462 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 156 1 156 156 251 94.0 5e-66 MTIPYPEKYMKPELGIGKLANYQGVQADSLVAGAGGLGFGVGVQVKEDVATTYQDGQFYG VTYAKNYVEEIPFGDIEKVGLYKEHEMVPILRKGAIWVKVDEDVLAGENAKALSTGNFGK ATISSDPATTPSDTVIGTFKTTASAGNLAVLQINLP >gi|284795543|gb|ADDQ01000006.1| GENE 55 44486 - 45586 1048 366 aa, chain - ## HITS:1 COG:lin1728 KEGG:ns NR:ns ## COG: lin1728 COG3566 # Protein_GI_number: 16800796 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 2 365 3 367 369 328 53.0 1e-89 MVIRYDKAFIQDFKETDEGYLTITACPITRPGVFPYRRTDGGLSMEAKLPDELFSKTTVL SANAKPMTDDHPTEPVTAANYNKYSKGMTHNDAHVLDNKLLVSFTITDAETIKKINDGKR ELSIGFQADVTKETGVYNGMQYDSVQRNMQINHIAIVDEGRAGHEVAIRGDSAAFMIDTK DKQTGGSNMPKLIIDSKEYEVDPVVKANYDAMQAKLDAAEQRSSNVEKLEGERDALKAQI DKLNKEIDEAKKKEVTADALDKRVQDRVDLINKAQKFLGDSVDFTGKSDREIKESVIAKT SPDFKGDGKSDDYIAAYFDSAVANVEKKGFTNPAAFNDAKDKDKEAAEEIEKQKNNRLNM NKKEDK >gi|284795543|gb|ADDQ01000006.1| GENE 56 45599 - 45808 401 69 aa, chain - ## HITS:1 COG:no KEGG:EF1460 NR:ns ## KEGG: EF1460 # Name: not_defined # Def: LysM domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 69 1 69 69 69 97.0 3e-11 MAKEKKASSKEENKKELSKTTQKTTHTVSEGETASEIATRYHMSLRKLLDLNELESINQV TEGIRLLVE >gi|284795543|gb|ADDQ01000006.1| GENE 57 45801 - 46088 303 95 aa, chain - ## HITS:1 COG:no KEGG:EF1459 NR:ns ## KEGG: EF1459 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 95 1 95 95 167 98.0 9e-41 MDSQKFIDLCKKRVVDFANSQLDYTDQKKISESDIYVVWLAKTLQNNKALLSTNLFDGMY YEVTFNGDKNELYFDAYKKWRNIRFDVTEGGDQNG >gi|284795543|gb|ADDQ01000006.1| GENE 58 46143 - 46307 212 54 aa, chain - ## HITS:1 COG:no KEGG:EF1458 NR:ns ## KEGG: EF1458 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 54 1 54 54 62 100.0 6e-09 MNKNEKNKRRWEDVPKSKSLGYPDEMTKKEIDTSKKKDKDFMQQLKKSLKEKEE >gi|284795543|gb|ADDQ01000006.1| GENE 59 46300 - 47544 968 414 aa, chain - ## HITS:1 COG:lin1730 KEGG:ns NR:ns ## COG: lin1730 COG2369 # Protein_GI_number: 16800798 # Func_class: S Function unknown # Function: Uncharacterized protein, homolog of phage Mu protein gp30 # Organism: Listeria innocua # 5 262 7 264 469 212 42.0 1e-54 MKNNPKTRYPLRLEESYAKNIQKALKEIEKVSLYEFDKYLAPMIDENKLVNDSKFIQDGL FDAASKLIRKAQTYFLGILQNRTAQKIVRKHINSVNAFNKSNVNSQLSARGINPLQTEKW LDSYVQAKIAENISYVTNIRDDYSKKFEQVIYRGITEGKSSNEIREELVHQAGMSSDKAA FIARDQTGTILGQMNSERQKRAGFQAFRWSDSGDERVRDSHRERNGKIYFYADNPLLPGE EYNCRCVAEPVDDEELLEESIDLGLSNQEEHAVKTYVSSEAYKLNDKLRNGYQLDESDLK LIDNLDKALDKMTNYDGEVTRSMFFDSSDDLVKFANNYNLNDVVQFPEYISTTKDIYSEQ DSLRFVIMSSTGKDLGSYNKSEKEVLFNRDAKFIVKDRYLLDGKPYIVLEEYHE >gi|284795543|gb|ADDQ01000006.1| GENE 60 47534 - 48928 1025 464 aa, chain - ## HITS:1 COG:lin1731 KEGG:ns NR:ns ## COG: lin1731 COG3567 # Protein_GI_number: 16800799 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 6 458 5 456 461 509 56.0 1e-144 MGNIANEAKLLKLDGKAYRSDFMLGNGKGHARDNLSRQRPGMSKRLSHSQLESLYSSNSM AKNIVDIPAEDLTRNGWSLKMQDDKVKALYESKLRQLKAKERLQQLFTYERLYGDGFVSI GTIEKREYSLSEPLDFENIKSVPYINAFSGKKISNRIIDEDVFSPNYGQIESFEVNNRSN NSRIQLLNNTTYSTATKIHRSRVLHQQNLRFEDELEGSSLLENLYDILTVADTSVWSVGQ ILYDFIFKVYKSSDVRSLTAADKAEIAMKMDYKFRTEALAIIDSEESLGKESSPVSGIGE LLDFVWDYLAGAARMPKTVLKGQEGGTVTGAQYDVMNYYSRITAIQENQLRPHLEYLMRC LMWAEDECGGRLDPDSIEWSIEFNPLWNVDSKTDAEIRKLTAETDKIYIEAGVSDPEDVH EARFGRFGVTETSKFNADSLTPDELDIMAAAVYTNYKRVRDHEK >gi|284795543|gb|ADDQ01000006.1| GENE 61 48951 - 50387 976 478 aa, chain - ## HITS:1 COG:lin1732_1 KEGG:ns NR:ns ## COG: lin1732_1 COG5410 # Protein_GI_number: 16800800 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 2 304 8 310 310 365 57.0 1e-100 MDQEQLDALANAALEELARRNYGDFFYLSHGKQWDLLRHQKYITDRLQKIIDGEQKYYII EIPPQHGKSTVITETFPAYYLMRHPDSLVMVVSYSKELFQKFGRKNREKFRLFSDQLFGL QISSETSSVSEWGVEGHLGSLYSTSILGGATGRGARLLIIDDPIKNRAEAESKTIRDKIY NEWQDTFYSRLTADASVIVIMTRWHEDDLAGRLLKEQTLPWEEIKIPAIAEDDDLLGRKP GEALAPEIGKDEEWAAKTKAVTGSRGWAALYQQRPTPAGGNIFKRSWIKFYVPTLSKKIE LSLGDDVVILPRLFDRQAQSWDCTFKDTETSDYVSGQVWGKKRADFYLLDRHHERMGIVE TMKAIKVMCNKWPKARGIYIEDKANGTAVIEMLKKKISGIVPVTPDGGKEVRANAVAPLW EAGNIYLPHPLICPWVNDFIDELIAFPNAEHDDDVDSMTQLLNKMVSKVSLRERYLDN >gi|284795543|gb|ADDQ01000006.1| GENE 62 50368 - 51093 498 241 aa, chain - ## HITS:1 COG:no KEGG:EF1454 NR:ns ## KEGG: EF1454 # Name: not_defined # Def: terminase, small subunit, internal deletion # Organism: E.faecalis # Pathway: not_defined # 1 241 1 241 241 369 94.0 1e-101 MANQMKEPTKKIKERYDLFVDYYLQSFNATKAAVLVGYSEKTARQQGHKLLTNAYIKEKI QLEMKRLRDRMKDEGLRSFSMLLDIAMQTEGKIQDHNEAEIAIDKIKSELSDLELEMLKA NNDLEKVQKAADAIDGRKKEMRSHKRSLLEQIDSIKKEYFELNLERVVLLNELSKHQSRY LDAKEWEKLQSLKKSIFQDILDRGGFKAIDQIQHSGKVDVNPLANLSEEELRRLANGPRA T >gi|284795543|gb|ADDQ01000006.1| GENE 63 51145 - 51936 351 263 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293382333|ref|ZP_06628272.1| ## NR: gi|293382333|ref|ZP_06628272.1| hypothetical protein HMPREF9377_00223 [Enterococcus faecalis R712] # 1 263 1 263 263 446 100.0 1e-124 MSKKYKIIDTLSRVEFGELKQCEFESYKQFVKKYKWFENVFFSFELANKSVKQFKDFEKH INSKENKYDINEIHTTGLYHITSLVLFLRLFIDNSKSYSTKVSSECKLFIKKTEKNPSIK ILKALRDYSQHYHLPVENTHRVYDIFNETMTTKFIITKSDLLKNKENKRNLAIIEQYPDD EINIGEKIDEWFQSITLLMENILEEFTSNISEETKNILRNKFGWIQSKDKKYFLNSVVEE GEYYPEIYYSTEPRVLNVILMMI >gi|284795543|gb|ADDQ01000006.1| GENE 64 52091 - 52564 379 157 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293382334|ref|ZP_06628273.1| ## NR: gi|293382334|ref|ZP_06628273.1| conserved hypothetical protein [Enterococcus faecalis R712] # 1 157 11 167 167 296 100.0 3e-79 MELKTLRALTLKHINLSINMLNNPGLFNTSDSSFNILIEEQIFITLAFVGSFLERSNKNI YKDKTLLGYKYLWNYSKHGETPFKFVALDVKPSFTFPLVITKKFIFGKSYCVWDEMPFDD DPRNKKQFAAYQETLQGKNMKNSLQELLTIIEQLNEI >gi|284795543|gb|ADDQ01000006.1| GENE 65 52580 - 53299 722 239 aa, chain - ## HITS:1 COG:SPy0946_2 KEGG:ns NR:ns ## COG: SPy0946_2 COG3645 # Protein_GI_number: 15674964 # Func_class: S Function unknown # Function: Uncharacterized phage-encoded protein # Organism: Streptococcus pyogenes M1 GAS # 121 239 4 122 127 169 68.0 4e-42 MKELIKVSVNENDEQLVSGRELHEFLLVGTPYKRWFERITEYGFAENVDFTVIAKNVHDE TAFGGVRTVTDHAMTLDMAKEISMIQRTDKGKQARQYFIQLEKAWNNPEMVVQRALQIQT KKVEALQLENEQLRPKALFADAVSVSHTSILIGELAKLIKQNGVDVGAKRLFSWLREKGY LIKRKGTDWNMPTQKSMDLELFEVKETTIARSDGSVSISKTPKVTGKGQIYFVNKFLSE >gi|284795543|gb|ADDQ01000006.1| GENE 66 53268 - 53510 172 80 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293382336|ref|ZP_06628275.1| ## NR: gi|293382336|ref|ZP_06628275.1| conserved hypothetical protein [Enterococcus faecalis R712] # 1 80 1 80 80 139 100.0 7e-32 MNYWYISLSKNYPPKITRQVELHRHYAVVECIQRVNKKEMVALELNFLGYGFYKDNHIQE NLTHKKRSVHYERTNQSISQ >gi|284795543|gb|ADDQ01000006.1| GENE 67 53945 - 54529 382 194 aa, chain - ## HITS:1 COG:no KEGG:EF1450 NR:ns ## KEGG: EF1450 # Name: not_defined # Def: positive control factor, putative # Organism: E.faecalis # Pathway: not_defined # 1 194 1 194 194 315 99.0 8e-85 MLDQHGREILIQEYKSDLKDASRQHRRIAKKKYQIEKNGRLETIDDRTAEDIKEQSIYAE IISSTKYALYWLEHGIERPLDEEAAKKIPKYRRDKHITNMDKISYEIYCNQYESARNYPI TEEKQEMLIQLKELLSTFSERERDLFDYIHNQQLTYAEAAEKMDIKVGTAKSMSQRIRNK IDAYFEYGHQISLF >gi|284795543|gb|ADDQ01000006.1| GENE 68 54630 - 54809 119 59 aa, chain - ## HITS:1 COG:no KEGG:EF1449 NR:ns ## KEGG: EF1449 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 59 1 59 59 103 100.0 2e-21 MDFKPAKLSELENFDGKHVIILVSNGQTKVADLPEHGIVEVISHAGKVTFIEQKIKEKF >gi|284795543|gb|ADDQ01000006.1| GENE 69 54825 - 54917 148 30 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGKKKSKIKKKKRRLQEKAMANGTINTKKK >gi|284795543|gb|ADDQ01000006.1| GENE 70 54950 - 55129 134 59 aa, chain - ## HITS:1 COG:no KEGG:EF1447 NR:ns ## KEGG: EF1447 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 59 1 59 59 98 100.0 6e-20 MKTAEEEINELLGKYNFDLAVLKDINYRLSCCREEAYARQQLRYLKNQIIMGFATEKKK >gi|284795543|gb|ADDQ01000006.1| GENE 71 55130 - 55336 254 68 aa, chain - ## HITS:1 COG:no KEGG:EF1446 NR:ns ## KEGG: EF1446 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 68 1 68 68 134 98.0 1e-30 MLSYPELYILGRQVDGVYVEYLHGSEQADLFFDYTIARDERNHMNKTNMKDGAWEILKYG SPITLKEN >gi|284795543|gb|ADDQ01000006.1| GENE 72 55330 - 55647 455 105 aa, chain - ## HITS:1 COG:no KEGG:EF1445 NR:ns ## KEGG: EF1445 # Name: not_defined # Def: replicase domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 105 1 105 105 177 97.0 1e-43 MKIIAKGRGTGKTTELVKESARTGQYILASNKSHVRAIEQIAKKAGVTIPYPVTVDEIVS MDRFTCASSIQREGLLVDEAIMVLSKLIGLKITGATISLEGEQQC >gi|284795543|gb|ADDQ01000006.1| GENE 73 55661 - 56275 659 204 aa, chain - ## HITS:1 COG:no KEGG:EF1443 NR:ns ## KEGG: EF1443 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 129 1 129 195 188 74.0 1e-46 MNKQEKEDLIQALYDIGGCDAEDEWSKGYDDGVNASIEVIKELKVHGKVIFSHEEKFVAD WLNDLRGQISDVKLNSGAVFMTFIGRQLERYYDEEYSFLTEKIESWLTVPKNKVKLMSAI DNGYEVEKEPTIHELKILPEYFEAVVSGDKRFEIRKNDRNYEKGDILRLNEYQDGQYTGD VHVAEITYITDYAQQDGYVVLGIK >gi|284795543|gb|ADDQ01000006.1| GENE 74 56268 - 56435 195 55 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293382343|ref|ZP_06628282.1| ## NR: gi|293382343|ref|ZP_06628282.1| 6-phosphofructokinase [Enterococcus faecalis R712] # 1 55 1 55 55 87 100.0 2e-16 MKQLKISYIDLAVIIESIYYGGDEDVSDIEDLLKYLRDNGHLSTVLTVSRGISDE >gi|284795543|gb|ADDQ01000006.1| GENE 75 56432 - 56785 318 117 aa, chain - ## HITS:1 COG:no KEGG:EF1442 NR:ns ## KEGG: EF1442 # Name: not_defined # Def: DNA topoisomerase domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 115 1 115 117 204 91.0 1e-51 MSDYLDRIKKIMELKSRDEALEVMEESLKKGFKYVVRDCDSEYLSFFSLKPKKYMDLGSW GYVNENAQGALPSTVILKNTDITEISWRNKQPIIITEFLKYQKAGLEDELFRVEEAE >gi|284795543|gb|ADDQ01000006.1| GENE 76 56782 - 57120 206 112 aa, chain - ## HITS:1 COG:no KEGG:EF1441 NR:ns ## KEGG: EF1441 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 112 1 112 112 192 96.0 2e-48 MHELIKEIERQLEMDRVEEGNMSAEDVLFIVKGFKRPYLNENQQIVLDWLKEKYTVTNIE PIELFWRLRVNSIKPDYRDRPVYRSYRYMSKIGQLQVIQAFSRWALEQEKAE >gi|284795543|gb|ADDQ01000006.1| GENE 77 57121 - 57525 414 134 aa, chain - ## HITS:1 COG:no KEGG:EF1440 NR:ns ## KEGG: EF1440 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 134 1 145 145 176 66.0 2e-43 MIPKFRAYSVEENIMYYPDEDKNVEWTIDDDTGFIAPLINLENGMWGMIDKYVLMQSTGL KDKNGVEIFEGDILVYDAPKKYAHRRSMHEIAYADGRFFWEFLDLVFCQSNILYRDGYLV IGNIHENPELLEGN >gi|284795543|gb|ADDQ01000006.1| GENE 78 57531 - 57758 128 75 aa, chain - ## HITS:1 COG:no KEGG:EF1439 NR:ns ## KEGG: EF1439 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 75 1 75 75 122 100.0 5e-27 MTYPNFEKDSSTCANCGNALFNDGEFTNQSYLTIRDNFMIVNFFQFEDGTDNMFCDANCL ASFLSAEEVEILESE >gi|284795543|gb|ADDQ01000006.1| GENE 79 57779 - 58006 234 75 aa, chain - ## HITS:1 COG:no KEGG:EF1438 NR:ns ## KEGG: EF1438 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 75 1 75 75 144 100.0 8e-34 MKLTSVIFESSVERFPPLVAIDLDQLTPDEYVTLRNLGYDTQLSKITKRTFEELEGHLGI RGDVAKKNGFYVLIK >gi|284795543|gb|ADDQ01000006.1| GENE 80 58031 - 58780 567 249 aa, chain - ## HITS:1 COG:no KEGG:EF1437 NR:ns ## KEGG: EF1437 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 249 1 249 249 473 100.0 1e-132 MGKNLLREKKRLIRQKILFLTGENESWMKNPEIVKEVQRLSKQLESDLIADKRPLPSLDP DKLTKEKYQHFLDLGYQVGDIKKALGLGTTTFQNWRKANGIENKINRKQKKEESKLMKFN IHTASLLLPGTFGAEGKECITISKSGLALSGPVVRRLNKPEWIQLYLDESRLALFVIPCK ATDEGARSCVNPKSKKKAGYRKSWSGSILEKVAKASKMDIENHRYHVEPESVEGYPTALG FDLTKAVKN >gi|284795543|gb|ADDQ01000006.1| GENE 81 58864 - 59178 175 104 aa, chain - ## HITS:1 COG:no KEGG:EF1436 NR:ns ## KEGG: EF1436 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 104 1 104 104 214 100.0 9e-55 MSIALPKQKHLRGPLLDYLRIAEDNGDLFAWRKACEIGREIFSGDFSDNAKPLIVIYKDG SSEVFNTRADVISACRIGNETLRKCLETGKQDRLGRCYDYAILE >gi|284795543|gb|ADDQ01000006.1| GENE 82 59199 - 59696 381 165 aa, chain - ## HITS:1 COG:BH3539 KEGG:ns NR:ns ## COG: BH3539 COG3331 # Protein_GI_number: 15616101 # Func_class: R General function prediction only # Function: Penicillin-binding protein-related factor A, putative recombinase # Organism: Bacillus halodurans # 7 141 12 146 168 73 33.0 1e-13 MKAWSQFEKMIEQTNEWYCRNRKGTVAKIPNGTKTIRVGGKPVVIPTNKTGCDFIGHLKG RPIAFDCKSTENKTAFPFYVGNKPMLKDHQKNFLKDFKLSGGTAFLLIQFNKSHQVFLVD VDDYLNMQKNLGRKSIPLDYLKEFEVRQHGYYSHYLEKLEQNYWQ >gi|284795543|gb|ADDQ01000006.1| GENE 83 59712 - 60470 448 252 aa, chain - ## HITS:1 COG:lin2009 KEGG:ns NR:ns ## COG: lin2009 COG3935 # Protein_GI_number: 16801075 # Func_class: L Replication, recombination and repair # Function: Putative primosome component and related proteins # Organism: Listeria innocua # 121 247 104 234 239 85 37.0 9e-17 MNYLQQILAFDDYLLYKQKLSSGQIALWRALMSINNKAGWATWFTAANATLESLSGLSRS GINKNRNALKQLGLIDFKSNGRKATSYKVCVLYTLNSAQESTQQSNDKVTLKSTTQSTNS GTLIKHKQNINTNNSFSPETDKNKLNIYAAVEQNFGRPLSPIEMEMIKQWQTEDGYPDDL IQLALKEAVLNQAFSLKYMDRILLSWERKGIKTKNQAIKKISEYNMRNDQEEISVDSIPK VTMHNWLNPEGN >gi|284795543|gb|ADDQ01000006.1| GENE 84 60488 - 61189 418 233 aa, chain - ## HITS:1 COG:lin1243 KEGG:ns NR:ns ## COG: lin1243 COG1235 # Protein_GI_number: 16800312 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Listeria innocua # 2 232 22 252 252 160 34.0 3e-39 MIEINIQGSSSAGNNYLLADGNSSLMLEAGLKPKDIMKQGINFSNIQGLLVTHEHGDHSK YINDILLAGRFDVWASRGTLEGLGINRRSHILKANQQQKIGDWLVKPFATIHDDKKARAR EPLGFLILSPSGKKIVFATDTNYLPKTFKDVTHWLVECNHDIKLVRQSKLPKSVQDRILR THMSIDACKKFFQSTDLTKTEEIYLIHLSDKNSDPEKFKEEIEKITNKKIIIA >gi|284795543|gb|ADDQ01000006.1| GENE 85 61189 - 62358 734 389 aa, chain - ## HITS:1 COG:no KEGG:EF1432 NR:ns ## KEGG: EF1432 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 389 1 395 395 585 82.0 1e-165 MAHELAENKIYGNRLTKINDTFMPQVESQLLSNGINMTEYQKQCVISAIQGINTMLTNSN LSINDVDSTNMTETLMTIAALQVNASAIPREVYFQTRNVNRKQFGQSDNWVKVIEMGIEG DGNDAILSKFGRNVKHVHRHWEVREEDHFSYPGYKGLSVTDPEWGPTGKGKVVRVVYPIE MSDGTIEYHIAEREDVVKNLIAHINQNLMNETFGIAKKKKDASYQQKQEIDNKKQEIMNN LKTMSLDDILDSQEYQSYISPAWKSPQSRESMIVRKMRNNIVKKIPKNFENAYVAMQYQS QDDEVVKSVRKDVTEQTAQEVFDFDEEPSEATQETMKHDKETTADTTIIVPEEVKEPVTS HEKDNEPTQTAFFDDLTTNITSDTDGRGF >gi|284795543|gb|ADDQ01000006.1| GENE 86 62359 - 64473 1769 704 aa, chain - ## HITS:1 COG:no KEGG:EF1430 NR:ns ## KEGG: EF1430 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 702 1 702 707 1134 97.0 0 MKNISLESIRIHNFKGISDLMIEPNGKSIDIFGDNDAGKTTIYDAFLWCLFNKDSKERTK IQWRPLDENSEPIRGKQTSVTVVLAINGQAKEFEKVRGDKEVIKRNSEHKSYEMFTKYLV DGLETTTKKAFDDEVEKVLDQDTFKNLTSVTYFCEQLVADERRQKLFEYFGSKTDEEIIN ETPSIHQLKEIIGNDDIKTARDRVLQDQKRINETLKNIPVKIEGIQAALPDIENINKEQL LTTRNELTSKKNDIENQLVTIRNGGNISELIASLNTKQEELTAAKLKHDNAQNARINGIE QGKSKLFADFNKAQKTYADEESSLNVTERLVSIKDNELIALNKKHEELYDKYDEVEAEEF TGGLVYTKLSFNENLLVCQHCNRPYDVKDQDEMKRHHEEEEQKRAEEIELTNKEIKAQFE ADKQIKLSEIREKGIQNNKDREALKKEIGELKEQLLIKTEAYNIAKKHLEDVKENLADVE QQISSLKLEKIPFEATEKYSTITKEIKKLQEYITQSNEAILEQTSAKTSEITEIDKEIAM IDEKLALLKEYERQLSIIEDFNEQERQLSHKKGEVLQKLVLFEEFFITKQNMLQEIINSH FSVVKWKLFDFFEDGGLNEAVCEPMIDGVPFSSLNNGSRMQAGLDVSNTLMKQEGYIVPI FIDNAEGLTNHNRDSVQVDTQVIAMYVNEDDKALRIKNHKTEGK >gi|284795543|gb|ADDQ01000006.1| GENE 87 64478 - 64768 386 96 aa, chain - ## HITS:1 COG:no KEGG:EF1429 NR:ns ## KEGG: EF1429 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 96 1 96 96 164 96.0 6e-40 MDNESNKLIMSKRFEEWFKNATENCAERELYATALIARMDWLVDPIISKSYRYDLTTELN QNHSSAWYDVATEICNKRKETVIRAILEYNIEIEGD >gi|284795543|gb|ADDQ01000006.1| GENE 88 64824 - 65039 240 71 aa, chain - ## HITS:1 COG:no KEGG:EF1428 NR:ns ## KEGG: EF1428 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 71 1 71 71 122 94.0 3e-27 MKKRKPKSLYEARILGAFILVFILGLLIKNSVPASYLLLIIGPIAVVWFMKYDDAKYLVY TKKETHSSAND >gi|284795543|gb|ADDQ01000006.1| GENE 89 65036 - 65206 176 56 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227553225|ref|ZP_03983274.1| ## NR: gi|227553225|ref|ZP_03983274.1| conserved hypothetical protein [Enterococcus faecalis HH22] # 1 56 1 56 56 64 100.0 3e-09 MKNKELAIKTMMTLSVGILFFVFILCLIKSQFLTAIILALFFMFIRVLWVNRVENK >gi|284795543|gb|ADDQ01000006.1| GENE 90 65218 - 65448 224 76 aa, chain - ## HITS:1 COG:no KEGG:EF1426 NR:ns ## KEGG: EF1426 # Name: not_defined # Def: VrlI protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 76 1 76 76 126 100.0 2e-28 MALEVIDFKSKKDRKVNSKKIPPLKAIEVAKRKNVSAATVTRWMKREIDPLPAKRNGGLV RIEVDDLEEWYERNFI >gi|284795543|gb|ADDQ01000006.1| GENE 91 65429 - 65989 377 186 aa, chain - ## HITS:1 COG:no KEGG:EF1425 NR:ns ## KEGG: EF1425 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 186 1 186 186 339 99.0 2e-92 MSMSVILRKSLIEVLNKKNEKKKDVAREISTSQQSLSDWTSQNNVKPVTIENALRLSDHF RDSTFTMEVIHQFFGMFKTCDGDVYRKDPSSLDRLQKIESNERKALKHDIERIILKNPEY LSEQDISKIVAYANEYLDEVIVEITLLSSLCDLASIDIRYLSEQRFPYWEQLGYMRKENT NGTRSY >gi|284795543|gb|ADDQ01000006.1| GENE 92 66052 - 66198 175 48 aa, chain - ## HITS:1 COG:no KEGG:EF1424 NR:ns ## KEGG: EF1424 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 48 1 48 48 65 97.0 8e-10 MPEKQKMIDFILEIMPNVKLIVELATDDQLIRLYEQAQDKLNYQLDLI >gi|284795543|gb|ADDQ01000006.1| GENE 93 66177 - 66446 261 89 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293382362|ref|ZP_06628301.1| ## NR: gi|293382362|ref|ZP_06628301.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis R712] # 1 89 15 103 103 167 98.0 1e-40 MKTLLNKQAMERLMESKNDDVYSLAKRMNVAPSTIYRILNGDRGVGSDLIAKLLRAFDLS EKDFDKLFIFSEVLPNVNGGSESCQKNKK >gi|284795543|gb|ADDQ01000006.1| GENE 94 66589 - 66897 262 102 aa, chain + ## HITS:1 COG:BH3549 KEGG:ns NR:ns ## COG: BH3549 COG1396 # Protein_GI_number: 15616111 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 3 83 6 79 154 57 41.0 7e-09 MNFGEKLKYLRESKGLGVNQLALKSGVNASNISRLEKGIRKDPTFDTVKKLAKALGVSVS YFDDEEKEINTVAAHIDDDVTEDEMNEILSFIDYIKKRDHNN >gi|284795543|gb|ADDQ01000006.1| GENE 95 66914 - 67378 520 154 aa, chain + ## HITS:1 COG:no KEGG:EF1421 NR:ns ## KEGG: EF1421 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 154 1 154 154 315 97.0 3e-85 MVTSEELMARFSDLTYKFEPNMPEKQKGLYINNVVYLNPQQHARELTSTVAEEIGHHLTS VGDIIDQDTNEKRKQEQKARDIGATMVVTPQDLIDCYHERFTYVWECADFLGITKQALEC ALSAYSKQFPEGLVYGDYKLFFKPNGTLGIVKWF >gi|284795543|gb|ADDQ01000006.1| GENE 96 67406 - 68002 464 198 aa, chain + ## HITS:1 COG:no KEGG:LMHCC_1411 NR:ns ## KEGG: LMHCC_1411 # Name: not_defined # Def: GP35 # Organism: L.monocytogenes_HCC23 # Pathway: not_defined # 14 197 15 204 204 122 38.0 1e-26 MKKSIFLGLIVASTLSLGACSSNKEDATQGSAKLRTSSKSEESSTLTQEEKIPTVNRAEY NVSFSEDWQGLKTSISKVVIAELSKSEMENQKLENRYVAQVYFKIENTSDKDFNVYPDQG TLVIEGQQIDADMWFSDDLGGEILHGVTKEGMVTFSIPKISNVDNVPNIRLIWRANFDTN NYDEESSKDFDVSFDLKK >gi|284795543|gb|ADDQ01000006.1| GENE 97 68166 - 68444 266 92 aa, chain + ## HITS:1 COG:no KEGG:EF1418 NR:ns ## KEGG: EF1418 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 92 2 93 93 125 89.0 7e-28 MTPYELRERLKKDVPEVKIYPILTNAYYSEKEYQEVLEKQLKLKYDIEKENMVTLPLFSW KEKELKMDKFYEKGWYKPKLYTLPKSMFRSED >gi|284795543|gb|ADDQ01000006.1| GENE 98 68444 - 69670 821 408 aa, chain + ## HITS:1 COG:SA1835 KEGG:ns NR:ns ## COG: SA1835 COG0582 # Protein_GI_number: 15927603 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Staphylococcus aureus N315 # 14 396 9 378 390 100 25.0 5e-21 MASIKSYKLKNGQDRWEYFVSNGRSNGTGRQQKIHKRGFRSHKEALKAAKIVEGQIASEE FVKENPQKMTISKFMNIWINEYKNNVKEGSRIVYRDAIRMYIDPYIGNYQLNKYKPADHQ KFINSLFTNKELGKNKNGLSYNTVKIVNAALSNAFKKAQKLGFVKSNPTYLVEFPLDKVK EKTNKEKKLEFYTLEQENLFLDTARNFDEYMWYVFFLIIFDLGLRKGEVMALRWFNFDFR DNILTFDKQRLYRKERPGQVILDDVKTDAGKRSLKMTNRVRNSVLELYGINYDLTSNVLP MTNSNQDFLFINHRGKNVGLPIRQRSVDTAWHRIIQKANLPKIRIHDGRHTNAARLRQAG VPLEDIKDMLGHKNVKTTEIYAHVSAEVKERAVNKLELYQMQHKKSGN >gi|284795543|gb|ADDQ01000006.1| GENE 99 69782 - 71131 1882 449 aa, chain - ## HITS:1 COG:SP2070 KEGG:ns NR:ns ## COG: SP2070 COG0166 # Protein_GI_number: 15901889 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate isomerase # Organism: Streptococcus pneumoniae TIGR4 # 1 449 1 449 449 685 74.0 0 MSHIQLDYSKLAPFVADHELEYMQTQVTAVDKALREGTGAGNDFTGWIDLPENYDKEEFA RIKKAAAKIQSDSEVLVVIGIGGSYLGARAAIEFLTHSFNNLLSKEERKAPQIFFAGNSI SSTYLADLINVIGDRDFSVNVISKSGTTTEPAIAFRVFKELLINKYGKEEANKRIYATTD RSKGAVKVEADAEGWETFVIPDDVGGRFTVLTPVGLLPIAVSGADIDRLMEGANDARKEY GATSDLKENQAYQYAALRNILYRKGKTTEMLINYEPGMHYFSEWWKQLYGESEGKDGKGI FPAAADFSTDLHSMGQYVQEGMRNLFETVVKIENPRHSISIPEQNEDLDGLGYLQGKEID FVNTKAFEGTLLAHTDGGVPNMIVKVPTMDAYSLGYVMYFFEIAVGISGYLNGVNPFDQP GVEAYKRNMFALLGKPGFEELAKDLNARL >gi|284795543|gb|ADDQ01000006.1| GENE 100 71313 - 72659 1636 448 aa, chain - ## HITS:1 COG:lin0569 KEGG:ns NR:ns ## COG: lin0569 COG0334 # Protein_GI_number: 16799644 # Func_class: E Amino acid transport and metabolism # Function: Glutamate dehydrogenase/leucine dehydrogenase # Organism: Listeria innocua # 3 448 14 458 458 556 65.0 1e-158 MDAKQYVKNIQEKIHQLDQGQTEYLQAVDEFLPTVEGFLEKNPQYIEANVLGVLIEPERI FQFRVPWQDDQGNWHVNRGYRVQYNSAIGPYKGGLRFHPSVNLSVMKFLAFEQIFKNSLT GLPIGGGKGGSDFDPKGKSDAEVMRFCQSFMTELQKHIGPSTDVPAGDIGVGAREIGYLF GMYKRLRNYDAGVLTGKPLGYWGSQARTEATGYGTVYFVKHLLADKNDTFEGKKVAVSGS GNVAIYAMEKATELGATVITCSDSSGFVYDPEGIDVSLVKELKEKNRERISKYVEIRKGA TYYDKESVWDFETAYDIALPCATQNEINEKQAAILVKNGVKVVAEGANMPCTLEAVAVFA KSAVIYCPGKAANAGGVAVSALEMSQNAERLAWSFEKVDGMLDQIMQNIYETCRDTANEY QARDNFVLGANIAGFEKVAAAMLSQGLV >gi|284795543|gb|ADDQ01000006.1| GENE 101 72797 - 74083 1132 428 aa, chain + ## HITS:1 COG:L56208 KEGG:ns NR:ns ## COG: L56208 COG2081 # Protein_GI_number: 15672240 # Func_class: R General function prediction only # Function: Predicted flavoproteins # Organism: Lactococcus lactis # 2 420 6 422 423 521 62.0 1e-148 MKKFDVIIVGAGTSGMMATIAAAEAGAQVLLIEKNRRVGKKLLMTGGGRCNVTNNRPAEE IISFIPGNGKFLYSAFSQFDNYDIMNFFESNGIHLKEEDHGRMFPVTDKSKSIVDALFNR INELGVTVFTKTQVTKLLRKDDQIIGVETELEKIYAPCVVLTTGGRTYPSTGATGDGYKL AKKMGHTISPLYPTESPIISEEPFILDKTLQGLSLQDVNLTVLNQKGKPLVNHQMDMLFT HFGISGPAALRCSSFINQELTRNGNQPVTVALDVFPTKSFEEVLKNVDYMIEEQPNKVAK NAFHSLIPERLLTFYLEKLAIEEVPAKQLTEKQRLSFVELLKDFQFTVTKTLPLEKSFVT GGGISLKEVTPKSMESKLVNGLFFAGELLDINGYTGGYNVTAAFVTGHVAGSHAAEIAEY TYLPIEEV >gi|284795543|gb|ADDQ01000006.1| GENE 102 74124 - 74831 306 235 aa, chain - ## HITS:1 COG:BH1900 KEGG:ns NR:ns ## COG: BH1900 COG0488 # Protein_GI_number: 15614463 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Bacillus halodurans # 7 234 250 478 538 142 34.0 8e-34 MYPTKVRFSHFRGRIDRLPDVAQAKQERKIIFPTNNQFSLYNPYPIRIENLTFAYENRTI LNQVNVQIPLNEKIALCGKNGAGKSTFLQQIEARHPAIYFSPKVRLGTYHQLDYRLKNDE PLLTYLLKRTNYSEKIVRSLLYRLGFQQENLQTKISSLSGGEAIKITLAQLFIEPNNIIL LDEPTNFLDLETIQALEEFISAYQGTVIFTSHDETFVEKVATRTIYLENGKIIDK >gi|284795543|gb|ADDQ01000006.1| GENE 103 74874 - 75308 537 144 aa, chain + ## HITS:1 COG:no KEGG:EF1412 NR:ns ## KEGG: EF1412 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 144 1 144 144 240 100.0 9e-63 MKITLTRKTSAWGALRYFTFYKNGVHQGKLFTNVPIEIEADPGDVLTFYEGWFQFYRRIE VTEDTKEITIINSKKLQHVFYTCVVLFLILTLLFLSAQKLSTFIIAEILIYSGIQWLFRQ QTYHFTVKKKTESFASYSKKSIAH >gi|284795543|gb|ADDQ01000006.1| GENE 104 75334 - 76728 1804 464 aa, chain - ## HITS:1 COG:lin0540 KEGG:ns NR:ns ## COG: lin0540 COG1486 # Protein_GI_number: 16799615 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases # Organism: Listeria innocua # 1 440 1 439 440 629 67.0 1e-180 MTRGALKIATIGGGSSYTPELIEGYIKRKDELPIKEIWLVDIEAGKEKLEIVGAMAKRMI KAAGLDWEVHLTLDREAALKGADFVSTQFRVGLLDARIKDERIPLSHGVLGQETNGAGGM FKAFRTIPVILAIIDDMKRLCPDAWLVNFTNPAGMVTEAAIKHGGWKKTVGLCNVPIGHR KQAAEMLGIPEEDLFFKFAGINHFHWHRVWDKEGQERTQELIDLIYGPKQEQESHLKNIF DAPFHYEQLKDLGMLPCGYHRYYYIEDEMLKHSIEEYERGETRAQVVKETEGRLFELYKD PKLDYKPKELEERGGTHYSDAACEMIASIYNDKRTDMVVSTENNGTITDLPYDCVVEVSG PVTAHGHEPYNWGAFPPAARGIIQNMKAMEETVIRAAINGDYGAALHAFTINPLVPGGVM AKTLLDELLIAHKAHLPNFADAINKIEETQPETVTYVAELMKSN >gi|284795543|gb|ADDQ01000006.1| GENE 105 76870 - 77868 1022 332 aa, chain + ## HITS:1 COG:lin0539 KEGG:ns NR:ns ## COG: lin0539 COG1609 # Protein_GI_number: 16799614 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 321 1 321 322 263 41.0 2e-70 MTSIIDVAKVAGVSKSTVSRLISGKGYVSADSQEKILKAMKELNYTPNYVARNLRAGATK TIGFLAPSYLGSLGIFLNRFISIAKKYNYSVTLFFTDGDQQKEIDALNQLKYKQLDGLFL LTRTNEWSVIEPYSAYGPLATWHRIDSPNIYSSYIDHYSGYYRSLEYLQQQGYQKIGHVL GNPENLNTHARKRAMKDFYENTQAPWQAEWLINDQYTNHSGRKIAHYWQQLTDKPEALAF YNDHVAAEFISELENLNYAVPRDVAVIGFDNSYVSELMHITTVDYAIQYQAENSFIYLYN QLNQTKIPEKKLTVRLVERRTVPKKDPADQSL >gi|284795543|gb|ADDQ01000006.1| GENE 106 77904 - 79166 1188 420 aa, chain - ## HITS:1 COG:SP1716 KEGG:ns NR:ns ## COG: SP1716 COG1668 # Protein_GI_number: 15901550 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: ABC-type Na+ efflux pump, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 411 1 397 399 201 32.0 3e-51 MSKFWIIATDVYKKNVKSLSFLIMILAPFLLVGIVYLAGSLASGFSGDTTIGLVSENQAL VKELTKNKTEDFSFKAVSSEKKAQEQLKDEKIDAYLLLDTTDNQISGQLYSERSLGNATE MLIPQMLNQLQTMANANRLNLTAEQVAMLNQQATFKKAKISFDENGKIKTGEDNTGIQMA LAMGITILLFVFISSYSSIIAQEIASEKGTRIMEVILSSTKAQTHFYGKLTGVILVALTQ IFIYGVAFVLGYSQLKNLDFMKSLLSGISPQSIFSSTFIFTLGFFIIGILVFAVLAALCG SLVSKPEDTAKAVQPIMYIGLIGYMIGITFGTNDPQNIVVKATSFIPLISSYIMPVRLAT ETASTMEAIVSLVILAVFGIILTIFSARLYKSNVLVYSEGGMIQSLKQSISILKNEQKHK >gi|284795543|gb|ADDQ01000006.1| GENE 107 79159 - 80058 276 299 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 2 290 5 298 311 110 26 2e-23 MLEVKELVKTFGDFKAVDHVSFTIPDGKILGLIGQNGAGKTTTFRLILNFLTQDSGSVLW NGQPLNEKEYNIIGYLPEERGLYPKITIEDQLIYFASLRGKTKKEIEPKIDFWMEKFQVK GKKTDKVKSLSKGNQQKVQLIATLIHEPKLIILDEPFSGLDPVNAELLKDGIIELKNQGS CVIFSSHNMDNVEKICDHLVMLKNGRMVLDGQVHEIRQQFGRTKLFLESPLSVEEVAATA GVKEAHLRQDGVLEATLENAEVGKVLFDKATANGYIPMFNQQPPTLEEIFKMKVGGQDE >gi|284795543|gb|ADDQ01000006.1| GENE 108 80163 - 80420 267 85 aa, chain - ## HITS:1 COG:no KEGG:EF1407 NR:ns ## KEGG: EF1407 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 85 1 85 85 161 96.0 7e-39 MKILTPVYQIKFKKVPNQLLIDERLMNELGTWLNRTGRIWACQSSKSAKEFKNTFYESTG LTANEVHISAETDGLFRLAENKASD >gi|284795543|gb|ADDQ01000006.1| GENE 109 80572 - 82368 1928 598 aa, chain - ## HITS:1 COG:lin1197 KEGG:ns NR:ns ## COG: lin1197 COG0322 # Protein_GI_number: 16800266 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Listeria innocua # 2 588 3 590 603 855 71.0 0 MNERIKNKLALLPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFRGSHDTKTERLVSEI DDFEYIVTESNIEALLLEINLIHKNNPKYNIMLKDDKTYPFIKITNEKYPRLMITRKVLK DKALYFGPYPDVNAANETKKLLDRLFPLRKCNPSQKTPCLYYHLGQCLCPYAFDVDPQVY KDMVEEIKGFLSGGHTEIQDRLQEKMAYAAAHMEFEKAAEFRDQIKAIETVMTRQKMTNV DLIDRDVFGYAVDKGWMCVQVFFVRQGKLIERDVSIFPFYDDASEAFLTFIGQFYQENEH FVPKEVLIPDDIDKESVEALLATKILQPQRGEKKKLVKLASKNAAVALNEKFDLIVRKQE RTIGAVEKLGNAMNIPAPIRIEAFDNSNIMGTNPVSAMVVFIDGRPAKNEYRKYKIKTVQ GPDDYASMREVIYRRYSRVLKEGLPFPDLILIDGGKGQVDVAKDVLANQLGVDIPVAGLA KNDKHKTSELLFGPNLEVVPLERNSQEFFLLQRIQDEVHRFAITFHRQLRSKNSFASKLD NIEGLGPKRKKNLLKEFKSLKNITAASVEELRKAGLPETVAKNVYRHLHQETTSEIEK >gi|284795543|gb|ADDQ01000006.1| GENE 110 82533 - 82847 541 104 aa, chain - ## HITS:1 COG:SPy1835 KEGG:ns NR:ns ## COG: SPy1835 COG0526 # Protein_GI_number: 15675662 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Streptococcus pyogenes M1 GAS # 1 102 1 102 104 149 74.0 1e-36 MTQAITDKDFATETDEGLVLIDFWATWCGPCRMQAPILEQLSEEYDEDEVKIVKMDVDEN PATPASFGIMSIPTLLLKKDGEVVEKAVGVHTKDQLQAMIAKHL >gi|284795543|gb|ADDQ01000006.1| GENE 111 82945 - 85311 2784 788 aa, chain - ## HITS:1 COG:lin1195 KEGG:ns NR:ns ## COG: lin1195 COG1193 # Protein_GI_number: 16800264 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Listeria innocua # 1 788 1 785 785 729 53.0 0 MNQRILSTLGFDKVKQQLLQFIVTAQGTNEVSELLPIADENKIQSWLNETQDGLKVQRLR GGIPIPKLENIQPHMKRIEIGADLNGIELAQVGRVLSTTSELTRFFDELSENEVDFERLY MWREQLEVLPELNRQLKQAIDDDGYVTDEASPALKAIRQNIRRSEQTIREELDSIIRGKN ARYLSDALVTMRNERYVIPVKQEYKNIFGGVVHDQSASGQTLFIEPKQILEMNNRLRQQQ IAERNEITRILAELSAELVPYRREITHNAYVIGKLDFINAKARLGKELKAVVPEISQANH VVFKQARHPLLDPEKAVANDIVIGEEYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPI PVEEESKMGIFTEVFADIGDEQSIEQSLSTFSSHMTNIVSVLKKVDHQSLVLFDELGAGT DPQEGAALAIAILDSLGAKGAYVMATTHYPELKVYGYNRAGTINASMEFDVDTLSPTYRL LIGVPGRSNAFEISKRLGLDNSIIEAAKQIMDGESQDLNEMIEDLENRRKMAETEYLEAR HYVDESAALHKELKEAYQVFFEEREKELQKARKEANKIIAEAEENAETIISDIRKMQLES GQQGGVKEHQLIDAKTQLSQLHHEETKLAKNKVLKKAKEQKKLKAGDEVIVNTYGQRGTL LKDNGKGQWQVQLGILKMNVSEEDMTPVAPQKEAKPRVTTVRSAESSHVGTQLDLRGKRY EEALAEVDQYIDAAILAGYPQVTIVHGKGTGALRTGITEFLKNHRSVKSYEFAPQNQGGN GATVVKFQ >gi|284795543|gb|ADDQ01000006.1| GENE 112 85422 - 85970 514 182 aa, chain - ## HITS:1 COG:BH3108 KEGG:ns NR:ns ## COG: BH3108 COG1286 # Protein_GI_number: 15615670 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, required for colicin V production # Organism: Bacillus halodurans # 1 177 1 175 179 105 33.0 4e-23 MLTILILLLLAFGFYTGAKRGLILQVLYSVGYLISYFVARTYYKEVASHLELYIPYPSVT PTSKLVFFNQEISLDLDKAFYSAVAFLLLLFAGWLVVRFLAIFLHGLTFIPVLKQVNGLL GGVLSVLVLYVGLFLVLATASMIPSDVVQNQFRSSGLARGIVKNTPILTKQAYELWVEPI TK >gi|284795543|gb|ADDQ01000006.1| GENE 113 85990 - 86433 521 147 aa, chain - ## HITS:1 COG:no KEGG:EF1402 NR:ns ## KEGG: EF1402 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 147 1 147 147 190 100.0 1e-47 MASNEKTRYKAIIADHTYTIIGQESKQHMDLVTKIVNEQLAEIKHLSPQTDTEQASVLLA INAISDQLKKQEYALKLEKQVADLKQKTIRLAELENRVRRMEIIEEEARDVLKKNGQEDV EIHNHVEAQQILNENRKQQIQNKGVSE >gi|284795543|gb|ADDQ01000006.1| GENE 114 86702 - 88804 2560 700 aa, chain - ## HITS:1 COG:BS_yvgW KEGG:ns NR:ns ## COG: BS_yvgW COG2217 # Protein_GI_number: 16080402 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Bacillus subtilis # 1 694 4 700 702 691 52.0 0 MQKSYKLEGLDCASCADKIEKSVQKIHGVEKARVDFMAEKMTLEVESGHDLEVENEARAV IGKLEPDVKVISLKDVKEEEGRNPNKNRLIRIIIAFVLFLALIIIKPSNNWVALASYLVV YVLIGGDIVKRAVTNIFRGEVFDENFLMSVATIGAFFIGEYPEAVAVMLFYQVGEWFQSA AVDQSRKSIAKLMDIRPDSANLLVNGQIKAVAPDTIEIGQQILVKPGEKVPLDGHIIDGS SMVDTSALTGESVPRTVKVGDEILGGFINKNGALTINVTKKFGDSTVSKILDLVENASSK KAPAENFISKFARYYTPVVVVLAILLAVIPPFIFPDTSINEWVYRALTFLVISCPCALVI SVPLSFFGGIGGASKLGVLIKGSNYLEILANTETIVFDKTGTLTKGNFVVQNITSVVLPK EELLRLTATAEQLSTHPIAISIKESYGKETVPATAIEEVAGHGIKATIEGKTVLVGNAKL MKQFGIEAPEVKEAGTLIFVAIDNQFAGYLVIADQLKPDAISAIKELKAEGVKQTVMLTG DNQQVAEAIAKEVGVDKVYAELLPDGKVDRLEELLKASSPKNKVAFVGDGMNDAPVLARA DVGIAMGGLGSDAAIEAADVVIMNDEPSRIASAIKLSRKTLRIVKQNIIFAIAVKIIVLV LGALGLASMQAAVFADVGVTIIAVLNAMRCLRVEKMKDNN >gi|284795543|gb|ADDQ01000006.1| GENE 115 88926 - 89930 821 334 aa, chain - ## HITS:1 COG:sll0739_2 KEGG:ns NR:ns ## COG: sll0739_2 COG1118 # Protein_GI_number: 16331977 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type sulfate/molybdate transport systems, ATPase component # Organism: Synechocystis # 5 269 40 311 395 233 45.0 3e-61 MRLIVDIQKELKSHTLQIQFETKTQTTGILGASGCGKSMLLKCIAGVETADKGQIVLNDQ VLFDAEKKINLSPQQRKIGLLFQQYALFPHLSVVENLTCVTKDLQLVTQLLASFHLTKVQ QQYPSQLSGGQRQRVAFARMLAAQPAYLLLDEPFSALDAPLKEELQIELQQRLSNLNQHA LIVSHSLDELYKLCQSLVIITKNQTLFGATNQLFNQPQTIEAAKLTGCKNIWPVKRIDAH RVQVIGWQQTLMVTQEVPISCHSIGIRAHDFTTEPQATNQIEVHHLQTLSAPFEQSAWFQ HQQTKIWWKGSNRLNPKVITQLSIPPTAIMPLCL >gi|284795543|gb|ADDQ01000006.1| GENE 116 89927 - 90598 643 223 aa, chain - ## HITS:1 COG:alr2433_1 KEGG:ns NR:ns ## COG: alr2433_1 COG4149 # Protein_GI_number: 17229925 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, permease component # Organism: Nostoc sp. PCC 7120 # 1 216 3 216 223 165 45.0 8e-41 MDVRPILLSFQTAIIAILFTFILGTGVAYIVFRLKNRKLKILLNSLFTLPLVLPPTVFGF FLLTIFGVQQPVGQFLLDFFAIQVVFSWPATVIAAVAVSFPLMYRSALTAFEQMDSELLA VAQTLGFSESRYFRKIALPLSMNGLLAGGVLAFARGLGEFGATTMLAGNIAGKTRTLPLA IYSAVASGDWRLANQYVVIMLLLCLIILFFTEFFSQRAWRRSE >gi|284795543|gb|ADDQ01000006.1| GENE 117 90607 - 91407 885 266 aa, chain - ## HITS:1 COG:BS_yvgL KEGG:ns NR:ns ## COG: BS_yvgL COG0725 # Protein_GI_number: 16080391 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, periplasmic component # Organism: Bacillus subtilis # 4 262 3 257 260 161 38.0 1e-39 MSKQKKTVFLLSLFSLVALIAACTNQPQKETVSTKKEEITLAAAASLESVMEKKIIPAFE KEHPDIQVTGTYDSSGKLQMQIEKGLKADVFFSASTKQMNALVAEKLINKKSVVPLLENQ LVLIVPNQDQAKWHDFSDLKKAQMIAIGDPASVPAGQYAEEGLKALGAWSYVEKHASFGT NVTEVLEWVANASAEAGLVYATDAATNSKVAIVAAMPEAALKKPIIYPVGKVAASKKQKS ADAFFNFLQSQQCRKYFENIGFKLTK >gi|284795543|gb|ADDQ01000006.1| GENE 118 91426 - 92397 937 323 aa, chain - ## HITS:1 COG:SMc00519_1 KEGG:ns NR:ns ## COG: SMc00519_1 COG0303 # Protein_GI_number: 15965501 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin biosynthesis enzyme # Organism: Sinorhizobium meliloti # 8 323 10 320 340 100 27.0 5e-21 MKTIRTEEAVGLPLSHDITRIDYGKTKEVCFKKGHIVVQEDIPILLSLGKKHLFVSLDPA EIHEEEAATFLYNLLTDDSCQPSEVHEGKIVAKASTRGLLKVNREKLIALNEIEGLALST KITNIEVQKDEKVAAFRVIPLTISRGQLEKARQLSTSEPLISVKPFKKIRVGIVTTGSEV YTGLVEDAFYPVLKAKFSAYPLVTIVKQEIVDDQPQKITVAIKKMLAQGLDLIVCTGGMS VDPDDLTPLAIKQTGAEIVTHGTPVLPGSMFLLAYKGEQTIIGLPGGVLFSEKTVFDLLL PRLMAKEVIKKSEIIDLSYGGYL >gi|284795543|gb|ADDQ01000006.1| GENE 119 92401 - 92883 244 160 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|134277849|ref|ZP_01764564.1| ribosomal protein S16 [Burkholderia pseudomallei 305] # 4 150 2 169 194 98 39 1e-19 MFKVGIVTLSDRCFQGLAVDQSGPLIREQLPALYQVTKQTILPDEENQLVELLQEWSKTC DLILTTGGTGLSERDRTPEATLRVAERIIPGISEGLRQLSLEKTPFAMLSRGVSVQRGRT LIVNLPGSPKSVTEHLHFLLPVLPHALDLITNKKIIHDEE >gi|284795543|gb|ADDQ01000006.1| GENE 120 92876 - 93310 407 144 aa, chain - ## HITS:1 COG:CAC1991 KEGG:ns NR:ns ## COG: CAC1991 COG2258 # Protein_GI_number: 15895261 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 4 144 3 143 145 131 46.0 5e-31 MKTGEIIAINISQRRGTQKKEIPEVNLIKGFGLENDAHGGNWHRQVSLLSFEEITAFNEK GARVGNGAFGENIIVSGIDLRQLPVGTKMKIGDSELVVTQIGKECHKHCQIYARVGDCIM PREGIFAVVVTEGHIKKGDQLDVV >gi|284795543|gb|ADDQ01000006.1| GENE 121 93313 - 94278 661 321 aa, chain - ## HITS:1 COG:lin1039 KEGG:ns NR:ns ## COG: lin1039 COG2896 # Protein_GI_number: 16800108 # Func_class: H Coenzyme transport and metabolism # Function: Molybdenum cofactor biosynthesis enzyme # Organism: Listeria innocua # 1 321 4 333 333 249 39.0 5e-66 MKDAFNREIDYVRLSLTDRCDLRCTYCMPATGLCFLKKEQLLTDDEIIFLLRILAKEGIK KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNGMKLAREAQGLKEAGLDGINISLD TLDPEEFREITRVGQLRNVLAGLEQAIDVGLPNIKINTVARKELSEATIVELAEIAKKET VHLRFIEMMPIGLGKAHPGMQQEEVEAILTKHYGTLQPYQKPLGNGPASYYALKDFKGKI GFISALGHCFCETCNRIRITADGHLKTCLHSADGYSLKEALAKEQTAELLGIIKSGIACK PEKHLFLEQQGEQRFMSQIGG >gi|284795543|gb|ADDQ01000006.1| GENE 122 94284 - 94766 410 160 aa, chain - ## HITS:1 COG:BS_ydiG KEGG:ns NR:ns ## COG: BS_ydiG COG0315 # Protein_GI_number: 16077663 # Func_class: H Coenzyme transport and metabolism # Function: Molybdenum cofactor biosynthesis enzyme # Organism: Bacillus subtilis # 2 150 8 159 170 145 51.0 4e-35 MNTQGEVHMVDISEKNDTQRTALAYGEIHMLEATAEAIQTQMIKKGEVLQVARVAGITAA KRTFEWIPLCHLVALTKCEIQFDWRNQTCLEVRCFTKTVGSTGVEMEALTGVQAALLTIY DMCKAIDRGMTMTNIGLLEKNGGRSGHFIRSSIKSKESDE Prediction of potential genes in microbial genomes Time: Sun May 15 12:18:32 2011 Seq name: gi|284795542|gb|ADDQ01000007.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont16.1, whole genome shotgun sequence Length of sequence - 4028 bp Number of predicted genes - 7, with homology - 5 Number of transcription units - 4, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 171 - 230 7.1 1 1 Tu 1 . + CDS 321 - 428 113 ## + Term 507 - 543 5.7 - Term 555 - 584 2.1 2 2 Tu 1 . - CDS 647 - 1123 584 ## COG0629 Single-stranded DNA-binding protein - Prom 1149 - 1208 8.8 3 3 Op 1 . - CDS 1263 - 2597 708 ## EF_B0033 hypothetical protein 4 3 Op 2 . - CDS 2594 - 3370 680 ## EFA0021 hypothetical protein - Prom 3418 - 3477 5.6 5 4 Op 1 . - CDS 3495 - 3557 58 ## 6 4 Op 2 . - CDS 3532 - 3798 361 ## EFA0022 hypothetical protein 7 4 Op 3 . - CDS 3805 - 3987 181 ## EF_B0037 hypothetical protein Predicted protein(s) >gi|284795542|gb|ADDQ01000007.1| GENE 1 321 - 428 113 35 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSVSESLQLMLAFGGFTLTLITTIVAILNYKDKKK >gi|284795542|gb|ADDQ01000007.1| GENE 2 647 - 1123 584 158 aa, chain - ## HITS:1 COG:SPy1830 KEGG:ns NR:ns ## COG: SPy1830 COG0629 # Protein_GI_number: 15675657 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Streptococcus pyogenes M1 GAS # 7 107 8 108 163 97 49.0 1e-20 MIQLSAVGRLTKGAELRTTTNGKSVANVTLACKRKRPDTNGNVPTTFIQCVLWGKPAQVF AKYTQKGALVGVNGELQTRSYDDQQGVTHYVTELVVEDFEFLESKETVQKREEKQHAVPQ GQSTPTVNEQPAMNQAPTQQNVYQQPSMNGLSEYGYNQ >gi|284795542|gb|ADDQ01000007.1| GENE 3 1263 - 2597 708 444 aa, chain - ## HITS:1 COG:no KEGG:EF_B0033 NR:ns ## KEGG: EF_B0033 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 444 3 447 447 706 82.0 0 MNKKTPKPLTPPKAFFNWCTAQIPTYEWQNKKETILASSRKNCPTIKKRLTKYSRLSFPT KFYSFGIILVRAKRIEIQTHSYWQTITDGTETLIYEPSNLERFSNDTHVKAHYENGHWHE GLLANYGYMSSAYTNTVFYSNNWQEKLTTISELKYLKLPTISRQELAHVYKYRNEIEFLQ KIGATTLANEILFDDERNIFGTWHKKVDMRVITKNWLKANKKRLKTTNPTFHMLMLEKTL KERKVARIEGIENYLHYSQIKQLPKEVNLTKFQHWFMRKGERFSYYMDYLHMLEELNTPF TDDVLFPENLQLAHDNATNTLNLLERELEEQQYQERKKQLKALETEIDDLLFLAPHSLQE IVEEGQVLHHCVGSQHYLEQHTKGKTTIVFIRRKEEPDKPYFTLEYREKRVIQVQGKYNR GHVPEEVEEAIEQWQIEIEKAMPS >gi|284795542|gb|ADDQ01000007.1| GENE 4 2594 - 3370 680 258 aa, chain - ## HITS:1 COG:no KEGG:EFA0021 NR:ns ## KEGG: EFA0021 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 258 1 251 251 446 96.0 1e-124 MDFQNIQTVKELRYALKQYKQTLATTIFDDTQGYISVAFKKEVIEKDGKNVQFLCFYPNY EVALYPVETLLDYLEKLPEQAIVTIKDHDGNYSSLFLTIDETIDQGNNYQWLVISDKNSY ERFFFTAQESTQEQAFEKMLKELETDHDSTLEVVHNWLCRQTDEALFLGILKEDRTLKGA MTYCIGKAQEQSKDQSSAMVADEVVFSWIKEYFLLEKLPETKAVGKVTTTNKKKPTKKSE TKPERKEVDEQIDLFECV >gi|284795542|gb|ADDQ01000007.1| GENE 5 3495 - 3557 58 20 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MENLKIYYKKRNLLLTTKDF >gi|284795542|gb|ADDQ01000007.1| GENE 6 3532 - 3798 361 88 aa, chain - ## HITS:1 COG:no KEGG:EFA0022 NR:ns ## KEGG: EFA0022 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 88 1 88 88 162 100.0 3e-39 MRNRIEELKEQARTELNEWGLIIDGCFEGDFETWIGCYARPKDKPTALDPINEEEAKEQA KYAVNGFPQDFTEWYEWEINNGKLKNLL >gi|284795542|gb|ADDQ01000007.1| GENE 7 3805 - 3987 181 60 aa, chain - ## HITS:1 COG:no KEGG:EF_B0037 NR:ns ## KEGG: EF_B0037 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 60 1 60 61 77 71.0 2e-13 MNTPHLTFKLEHARKEHQKLSEAIITNDTVTLLLNYGCLKNANDRLYQLEYFLNHKEWKD Prediction of potential genes in microbial genomes Time: Sun May 15 12:19:02 2011 Seq name: gi|284795541|gb|ADDQ01000008.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont17.1, whole genome shotgun sequence Length of sequence - 37116 bp Number of predicted genes - 38, with homology - 35 Number of transcription units - 23, operones - 12 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 44 - 730 936 ## COG0670 Integral membrane protein, interacts with FtsH 2 1 Op 2 . - CDS 723 - 1208 652 ## COG2030 Acyl dehydratase - Prom 1231 - 1290 6.6 - Term 1328 - 1388 5.0 3 2 Tu 1 . - CDS 1406 - 2743 1499 ## COG0773 UDP-N-acetylmuramate-alanine ligase - Prom 2836 - 2895 8.2 - Term 2846 - 2892 5.7 4 3 Tu 1 . - CDS 2898 - 3842 1099 ## EF1909 hypothetical protein - Prom 3868 - 3927 6.2 - Term 3918 - 3965 9.3 5 4 Tu 1 . - CDS 3969 - 4928 1149 ## COG4129 Predicted membrane protein - Prom 4967 - 5026 6.2 + Prom 4883 - 4942 4.8 6 5 Tu 1 . + CDS 5031 - 5642 649 ## COG4129 Predicted membrane protein + Term 5644 - 5693 11.4 - Term 5632 - 5681 11.4 7 6 Op 1 . - CDS 5683 - 6564 1115 ## COG1940 Transcriptional regulator/sugar kinase 8 6 Op 2 . - CDS 6567 - 6869 382 ## COG0759 Uncharacterized conserved protein - Prom 7010 - 7069 10.0 + Prom 6967 - 7026 5.0 9 7 Tu 1 . + CDS 7047 - 7199 223 ## 10 8 Op 1 4/0.000 - CDS 7216 - 7797 752 ## COG0218 Predicted GTPase - Prom 7829 - 7888 1.9 - Term 7827 - 7892 13.3 11 8 Op 2 . - CDS 7895 - 9148 267 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 - Prom 9274 - 9333 4.2 + Prom 9230 - 9289 8.2 12 9 Tu 1 . + CDS 9340 - 10368 1153 ## COG2706 3-carboxymuconate cyclase + Term 10395 - 10450 16.1 - Term 10384 - 10436 14.0 13 10 Op 1 . - CDS 10447 - 10935 376 ## EF1919 acetyltransferase 14 10 Op 2 . - CDS 10947 - 12320 1441 ## COG3069 C4-dicarboxylate transporter 15 10 Op 3 . - CDS 12337 - 13257 1131 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase - Prom 13398 - 13457 7.6 + Prom 13348 - 13407 9.6 16 11 Op 1 . + CDS 13440 - 15350 1496 ## COG0524 Sugar kinases, ribokinase family + Prom 15390 - 15449 8.2 17 11 Op 2 . + CDS 15469 - 16977 958 ## EF1923 hypothetical protein + Term 17196 - 17245 14.8 - Term 17184 - 17233 14.8 18 12 Op 1 . - CDS 17294 - 18139 819 ## EF1925 hypothetical protein 19 12 Op 2 . - CDS 18132 - 18671 410 ## COG4915 5-bromo-4-chloroindolyl phosphate hydrolysis protein - Prom 18692 - 18751 9.9 + Prom 18735 - 18794 3.7 20 13 Tu 1 . + CDS 18874 - 18945 56 ## - Term 18859 - 18902 4.4 21 14 Op 1 4/0.000 - CDS 18942 - 19661 1182 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) 22 14 Op 2 5/0.000 - CDS 19667 - 21496 2099 ## COG0578 Glycerol-3-phosphate dehydrogenase 23 14 Op 3 . - CDS 21517 - 23022 1722 ## COG0554 Glycerol kinase - Prom 23107 - 23166 8.1 - Term 23242 - 23292 7.5 24 15 Op 1 . - CDS 23299 - 24765 1196 ## EF1931 hypothetical protein 25 15 Op 2 . - CDS 24755 - 26089 1225 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases - Prom 26297 - 26356 10.5 + Prom 26131 - 26190 7.6 26 16 Op 1 . + CDS 26269 - 26625 429 ## EF1933 hypothetical protein 27 16 Op 2 . + CDS 26659 - 26820 220 ## EF1934 hypothetical protein + Term 26824 - 26879 16.1 - Term 26884 - 26917 4.5 28 17 Op 1 . - CDS 27063 - 27503 652 ## EF1936 hypothetical protein 29 17 Op 2 . - CDS 27573 - 28109 170 ## PROTEIN SUPPORTED gi|83643376|ref|YP_431811.1| acetyltransferase - Term 28121 - 28166 8.3 30 17 Op 3 . - CDS 28179 - 30884 3375 ## COG0474 Cation transport ATPase - Prom 31128 - 31187 9.3 - Term 31075 - 31124 4.3 31 18 Tu 1 . - CDS 31202 - 31852 603 ## EF1939 hypothetical protein - Prom 31876 - 31935 3.1 + Prom 31785 - 31844 6.7 32 19 Op 1 . + CDS 31941 - 32606 563 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 33 19 Op 2 . + CDS 32678 - 33073 535 ## EF1941 hypothetical protein + Prom 33103 - 33162 5.0 34 20 Tu 1 . + CDS 33183 - 34364 1037 ## COG0477 Permeases of the major facilitator superfamily + Term 34376 - 34407 3.1 - Term 34363 - 34394 3.1 35 21 Tu 1 . - CDS 34401 - 35939 1476 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily - Prom 35964 - 36023 4.5 + Prom 36118 - 36177 7.0 36 22 Op 1 . + CDS 36341 - 36442 96 ## 37 22 Op 2 . + CDS 36445 - 36594 251 ## EF1947 hypothetical protein + Term 36649 - 36689 3.4 + Prom 36655 - 36714 5.4 38 23 Tu 1 . + CDS 36745 - 37104 301 ## COG5646 Uncharacterized conserved protein Predicted protein(s) >gi|284795541|gb|ADDQ01000008.1| GENE 1 44 - 730 936 228 aa, chain - ## HITS:1 COG:SP1972 KEGG:ns NR:ns ## COG: SP1972 COG0670 # Protein_GI_number: 15901795 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Streptococcus pneumoniae TIGR4 # 3 228 10 235 235 161 47.0 1e-39 MNNQEYIQTGTGLNKFYAKIYGFLALGIGISAIMAYAMTTVFLPVLATLFQSSLAFWMIW LVEIGLVLYLGAKAQKNPTIAIAGFVAYALLNGVTLSVTLLMYTGGTVAGAFLSAAATFG AMSLVGVFTKKDLSAVGHAAYSALIGIIIAMLLNMFLLHSNAVEFFISILMVLIFSGITA YDNQRIRQVYAQTGDQAGTGMAVFFALQLYLDFINLFLAFLRIFGKNN >gi|284795541|gb|ADDQ01000008.1| GENE 2 723 - 1208 652 161 aa, chain - ## HITS:1 COG:FN0816 KEGG:ns NR:ns ## COG: FN0816 COG2030 # Protein_GI_number: 19704151 # Func_class: I Lipid transport and metabolism # Function: Acyl dehydratase # Organism: Fusobacterium nucleatum # 14 137 4 127 134 70 29.0 1e-12 MNIGKPRKLGKTIEDIEEGDSLSLTESIEDKDLLLYLGLTNDANPLYIQHDYAQKTEYEK PIVPSIMLMGIITSAISKHLPGPGSHVVNFSVNFVEPVFHYETLTFQLEVIKVDKMKDVI TISVEAVNEQENRVLDAVVMVQPPQVTIDELTEKEGTLTYE >gi|284795541|gb|ADDQ01000008.1| GENE 3 1406 - 2743 1499 445 aa, chain - ## HITS:1 COG:lin1646 KEGG:ns NR:ns ## COG: lin1646 COG0773 # Protein_GI_number: 16800714 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Listeria innocua # 8 439 3 433 447 555 60.0 1e-158 MGNQENKLYHFVGIKGSGMSSLALVLHQKGYNVQGSDVEEYFFTQRDLEKSGVPILPFNA DNIDKDMIVIAGNAFPDTHEEIARAIELGAEVIRYHDFIARFIEPYTSIAVTGSHGKTST TGLLAHVLSGINPTSYLIGDGTGHGEPDADFFAFEACEYRRHFLAYSPDYAIMTNIDFDH PDYYKSIEDVFSAFQTMAHQVKKGIFAYGDDKYLRQLESEVPVYYYGVSEEDDIQARNIQ RTTEGSSFDVYHKDDFVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSFKGV KRRFSEKKVSDMIIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEF AEALDLADEVFLCNIFGSARETQGEVRIEDLGEKIQKGGQVITEDNVSPLLDFENAVVVF MGAGDVQKFEQAYETLLSNTTRNVL >gi|284795541|gb|ADDQ01000008.1| GENE 4 2898 - 3842 1099 314 aa, chain - ## HITS:1 COG:no KEGG:EF1909 NR:ns ## KEGG: EF1909 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 314 1 314 314 471 100.0 1e-131 MDNAQVKRKHFRFPAYDDEQGVKLPTDNERNLFQDDLIGKAMSGSRRTATSAEDTRQSTP SVQQPTTNQSTTNKQTQQLTAAQQEQLARHRSNLPDYTKHASKATKNKQATKKNNSLFGT PKGNGWTQTYKKKEVVAKPSRPAASPLVQKTTPSYFVPKYIPASVIPEEQEPSFTEEELL KAMKKDRRSYVILDDEPTAFQVKDTEEDPTVRKFNIPTSEPEIPLTRRQYQQIKPDLERF GEDALDLRSRSRLNAAKKNAKSQTAYGKKLAKANAQVEPEAPVTEEKKKGILDKPLSGML EDSSSVLENSKYFS >gi|284795541|gb|ADDQ01000008.1| GENE 5 3969 - 4928 1149 319 aa, chain - ## HITS:1 COG:lin1983 KEGG:ns NR:ns ## COG: lin1983 COG4129 # Protein_GI_number: 16801049 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 1 312 1 312 327 224 41.0 2e-58 MKIGLRTVKTAISAALAMIIAEKLGLLYAPSAGIISVLSVTSTKKTSVMTGIYRLLSLAL ATILAYICFTFLGFTAIAFGIFLLLFIPAAVYFQLSDGIVVSSVLVTHYLVEKNLSWAII GNEFLLMSIGVGLALLANSYMPDTEKRLREDQEVIETMFRKILREMALHLNNAAGERNLV MHCADLKTFIRTGETWAKNHAENQLLSTNTYYLEYFAMRKMQSNILKNMLELLEDITVDA QQVRYIQQLLEYTAETFAENNDGQEIMNRIKTVYETYRTKPLPQTRSEFENRARLFQFLQ LFQSFIQVKADFAKLQLDK >gi|284795541|gb|ADDQ01000008.1| GENE 6 5031 - 5642 649 203 aa, chain + ## HITS:1 COG:SPy1879 KEGG:ns NR:ns ## COG: SPy1879 COG4129 # Protein_GI_number: 15675698 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 3 152 15 164 183 133 45.0 2e-31 MIVGRFRLGMRTLKTAIAVMLCILLFQFFHRGSPMIACLAAVFSLRQDLNTSLSFGKSRI IGNTLGGFLALLYVLAQDYFPNQHLVELLLLPLLVIIVIVVSDGINNNAGIISATATLLM ISLSIPQSDSFQYAMERVLDTFIGTFIAIGLNVFLQPKPAEEAHEISEDLAELEKKEKEL EALRQQVQARIAAEENTDDKANK >gi|284795541|gb|ADDQ01000008.1| GENE 7 5683 - 6564 1115 293 aa, chain - ## HITS:1 COG:L118696 KEGG:ns NR:ns ## COG: L118696 COG1940 # Protein_GI_number: 15673470 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Lactococcus lactis # 1 285 1 283 293 262 46.0 6e-70 MAILAFDLGGSSVKYGVWTGKELTNQGSFPTPGSWEEMKAHLYSVYADKRNESISGVAFS SPGVVDEKSQQILGISAIPYIHHFNIYEELEALFGLPVTIENDANCAGLAEIYEGAAKGK KEVLFVVIGTGIGGAIFRNGELYKGAHLYGGEFGLNFLSNGQTFSEIGTAVKMAQRYCER IGVEKQAVTGEEVFELAQRGDEIAREEVNNFYDYLTQGLFGLQFSYDPEMIVLGGGVSAK EGLLAEINRRMLTHLQTFELKDFVPEIVTCHYQNDANLIGAAANFQAKTNWEL >gi|284795541|gb|ADDQ01000008.1| GENE 8 6567 - 6869 382 100 aa, chain - ## HITS:1 COG:L122982 KEGG:ns NR:ns ## COG: L122982 COG0759 # Protein_GI_number: 15673654 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 77 1 77 88 97 59.0 6e-21 MKNPLIGGVRFYQRFISPGLPARCRYYPTCSQYMIDAIHTHGSVKGTTMGVARILRCHPF VKGGIDYVPLKFRLTKNPDETYHGPYTYRRNKKTEVEKDG >gi|284795541|gb|ADDQ01000008.1| GENE 9 7047 - 7199 223 50 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGLKFERSNDLDKLFDSFAVDPLKKEVPLEELAKQRQEVKKEEAKKQAKE >gi|284795541|gb|ADDQ01000008.1| GENE 10 7216 - 7797 752 193 aa, chain - ## HITS:1 COG:SP1568 KEGG:ns NR:ns ## COG: SP1568 COG0218 # Protein_GI_number: 15901411 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Streptococcus pneumoniae TIGR4 # 1 189 3 191 195 296 74.0 1e-80 MNVHNAEIVISAVSPKQYPESQLPEIALAGRSNVGKSSFINTLINRKNLARTSGKPGKTQ TLNFYLIEDALHFVDVPGYGYAKVSKTERAKWGKMIETYITQREQLRAVVSLIDLRHPPT QDDIQMYEFLKYYDLPVIIVATKADKIPRGKWNKHESVIKKALNFDKQDDFIIFSSETKE GKEAAWTAIEKFL >gi|284795541|gb|ADDQ01000008.1| GENE 11 7895 - 9148 267 417 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 154 395 248 444 466 107 32 1e-22 MYDNTDNNGTVRCSFCGKTQEEVKKIVAGPGVYICNECIDLCKEIIDEEFYDEAVRELTD VPKPQEILNVLNEYVIGQERAKRTLSVAVYNHYKRVNQSETAATQDDVELQKSNICLIGP TGSGKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQSADYNVERAEKGI IYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDT TNVLFIVGGAFDGIETIVKNRLGKKTIGFGKTNSALNEEESIMQHIIPEDLLKFGLIPEF IGRLPVMAALDKLTNDDLVRILTEPKNALVKQYQKLLSLDDTKLEFEPEALKAIAAKAIE RNTGARGLRSIIEEIMMDVMFDVPSDESIEKVIITKMAAEGTGKPTIIYNKKDKEAV >gi|284795541|gb|ADDQ01000008.1| GENE 12 9340 - 10368 1153 342 aa, chain + ## HITS:1 COG:SP1506 KEGG:ns NR:ns ## COG: SP1506 COG2706 # Protein_GI_number: 15901353 # Func_class: G Carbohydrate transport and metabolism # Function: 3-carboxymuconate cyclase # Organism: Streptococcus pneumoniae TIGR4 # 1 341 1 335 337 346 53.0 3e-95 MLEQILLGTYTRRASQGIYKIALDTTQGRLTEATLLLEETSPTYLALSQKGELFSVTSVD GEGGTAAYQSEMDHFNLLNKVTEEGAPPCYVAVDENRQLVYAANYHQGIVHVYRILEDGS LEDADKVIHTEPTGPHENQNNAHVHYTDLTPDQRLVVCDLGTDRVYTYNVSLDGKLSEIA QFVTEPGTGPRHLVFHPTKSLAYLFGELDSTVSVLSYDETDGSFTELQKVSTLPADYDAF NGGAAIRISSDGRFLYASNRGHNSIAVYAVSENGEAIERIQLISTEGDIPRDFDLDPSED FIVVANQDSDNLTLYRRNQETGLLEMIQKDVAVPECVCVLFV >gi|284795541|gb|ADDQ01000008.1| GENE 13 10447 - 10935 376 162 aa, chain - ## HITS:1 COG:no KEGG:EF1919 NR:ns ## KEGG: EF1919 # Name: not_defined # Def: acetyltransferase # Organism: E.faecalis # Pathway: not_defined # 1 162 1 162 162 300 97.0 2e-80 MKIRVADEKELPMILQFLTEVKAYMDVVDITQWTKDYPSQEDIQEDITKKRLYLLVHEEM IFSMATLCMEQEQDFVWLKRFATSPNYIAKGYGSLLFHELEKRAVWEGRRKMYAQTNHTN HRMIRFFESKGFTKIHESLQMNRLDFGSFYLYVKELEKQSIV >gi|284795541|gb|ADDQ01000008.1| GENE 14 10947 - 12320 1441 457 aa, chain - ## HITS:1 COG:VCA0665 KEGG:ns NR:ns ## COG: VCA0665 COG3069 # Protein_GI_number: 15601423 # Func_class: C Energy production and conversion # Function: C4-dicarboxylate transporter # Organism: Vibrio cholerae # 1 456 5 456 459 223 36.0 6e-58 MIESLLVLVVLVVVAYLIVKNYHPALSLIIGALVLLACAWMLGHPIYPAGEGTGFGLFDI FLKFKDTIIAQVSSAGIVIMILFGYSGYMNAIGANQMAVNFLVKPLMKIKRKSLFVPVVF LIGNLMSLVVPSASSLAIILMSILYPMLASMGISSLTAAGVIAMTATIMPTPLGADNVIA ANTLGYDVLNYVVWNAKISLPSLLIIAVAQYFWQKYCDKKEGEAAYVSLNEEGLSKQKEF DVPKFYAILPILPLLLIVGVGIAGMFIKGITMDIFVLTFISFFIAVLVETLRLKSFKKVQ DTAVEMFKGMGQGFSQVVMLVVGGSLFTSAIQTLGIIDSIMASVEASSSAGIVTTLIFSG ATTFFGILSGGGLAMFYAVIELIPGIAEKAGIDGILISLPMQMIANLTRTISPVAAVVMI VASTVGVSPIRILKRTSVPTIIGIISVIVLSILLLPY >gi|284795541|gb|ADDQ01000008.1| GENE 15 12337 - 13257 1131 306 aa, chain - ## HITS:1 COG:STM0051 KEGG:ns NR:ns ## COG: STM0051 COG1957 # Protein_GI_number: 16763441 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Salmonella typhimurium LT2 # 8 300 7 300 306 266 48.0 5e-71 MDTKKRPIIIDTDPGIDDAVALAIALNHPNLEVRLITTVAGNVDVEKTTNNALKLVDFFG KKVPVAKGCNCPLLIQLEDSAEIHGETGMDGFEFPQPISTCLDIHAVEAMRKEILSSDVP LTIVPIAALTNIALLLTLYPEVKENIAEIVMMGGSLARGNTNTSAEFNTYVDPHAAQIVF QSGVPLTMVGLDVTSQAVLTNHEVTAIRALGRVGEMFYGLFRHYRGGSLTTGLKMHDVCA IAYLTSPELFETTETFIEVALEGPAAGATVADLKMKYHKNTNAVACIDVNVEAFQKWVVE KMKAVN >gi|284795541|gb|ADDQ01000008.1| GENE 16 13440 - 15350 1496 636 aa, chain + ## HITS:1 COG:PA1950 KEGG:ns NR:ns ## COG: PA1950 COG0524 # Protein_GI_number: 15597146 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Pseudomonas aeruginosa # 323 621 2 305 308 178 35.0 3e-44 MNIKDIAKLAGVSASTVSKIINNKDQTISKETRERVLKIVRDYNYTPYSANLVTNSTTKT FVLLLNSHETFEAWVTSFIDKAQENGYNCLILNSHGSLEQELKNITSPTLKQASGIIWDP INENSKQYAKFIEELTIPYYFVNHSTNELPSLAGLYEEASYVLTQELLQNNHKKISYFVT NPKYKEAIIAGYKKALFDVNLPFSKENILTTIPADFSNQLITDGITGILTDDYTQAVFLE QLLKQSGLRTPDNYSLLAIKRKIDRSFLPDHISSVLLDTETFGSQLALSLLNKRKEKTAL INEAEKLVLDHKNTLGMSSVNPHSKMIVVGSLNVDNYLYSTNLPHNGKTNFLSSYAKFPG GKGLNQAVGLTKLGHQATLIGCLGSDTDANYLYKELEKYHVTTDGITRIQDTETGQAYIY VETSGDSMISILPGANTALTPKKIAQQKHLFMDASFCLIQTEIPLSAVEKACEIAQHSGV PIILKPAAIHHIPVNILEKVDFFIPNEDELLELQPDTGTLEEKAAYFLETGVKNVIVTLG KKGVLLKTHQVCHYFPATENIAVDSTGASDSFISALASYLSKGYPTEAAIQIAIQAAGFS VSKEGVIDSLVDHVTLENYLIKKEPALFAHRNTCVD >gi|284795541|gb|ADDQ01000008.1| GENE 17 15469 - 16977 958 502 aa, chain + ## HITS:1 COG:no KEGG:EF1923 NR:ns ## KEGG: EF1923 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 23 502 1 480 480 860 98.0 0 MSLIKTQDAIKTFLLSKKTQKKLAVFLYLAKQKKLDLSSVARKFDLSTKNLSIYLREIQE DLATLPENTLEIQIHHGKISLHTTSNDFLSHYFLLFNYYCVHSTDFILFQAIIKKENNSV WKVSQETNFSSSYIYKRLNNINKLFGLYGISVHFSPSASKVITGSEFQVLYAFLDVYWTI FLNTLALPRYTSTYFEDILTQHIKPEILERLEHASLLKLNLLLHIAKYRFPYTCEDDLQK EFEEHPYLRLFSDSKQTIFCSQSNFSEDQQRVVDIIAPIAIDNFDSAKRAKDLLAALNEI SCPEYFYVDSLLTNFCEVFQIPKMREFDRHYFLLILFKNIIYNQLFISQQPNTAILDFLV NKNSTYQKDLQKEIYAFYQNFSAHSSYQLRFKDQENPIWTCELLLRIYKHYSPRKKIKIG VAYSRDFYIASFIMMKIKQAFSEDIIFERTDFSSCDIVITDYPLFDLPKEIDRIYILEEE LTREDWELIFSKISIAIFDLQY >gi|284795541|gb|ADDQ01000008.1| GENE 18 17294 - 18139 819 281 aa, chain - ## HITS:1 COG:no KEGG:EF1925 NR:ns ## KEGG: EF1925 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 281 1 281 281 468 99.0 1e-131 MAKQKNFYDTYDALFQKPKWSFFPVTRTDTVKQLPNPNKKVVKPQTKKKKKQKKNKKIIW IGIAVAIGFIVYIDLAEKDDYWDYSASSEDVYPLKEAGLTTTGPVDLEKPLKVTIEENKL LFNQGYQIEIIGDADIETSGGKNFLILPSTEEYPDTKYLGNISFYEKRDYYTSAGMYLSG NLVNSLSDYLDTSKEFIKAYPIDKIADVQTGYILKRNQGYTDISKYYLFKDGTGFELEVS VDQLEKVKDPKDYSSFVKTYAKEVAFIEKSFKFESTDEESR >gi|284795541|gb|ADDQ01000008.1| GENE 19 18132 - 18671 410 179 aa, chain - ## HITS:1 COG:L175712 KEGG:ns NR:ns ## COG: L175712 COG4915 # Protein_GI_number: 15673319 # Func_class: R General function prediction only # Function: 5-bromo-4-chloroindolyl phosphate hydrolysis protein # Organism: Lactococcus lactis # 29 162 63 195 208 74 29.0 9e-14 MNGIMVLLVGAGYIGWVIYRNGRTYFRYKKNLKKYQTTHHLTDSDLEMYQRIMDELKKQI IYLNELTNKSRNLKKIEQVELGVASAKGIFKHLVKYPEAITHFSDFLYHKVPEILRASER FLSIKEDKLSTEEITLATNGILSTIRVLSESITDDYEKLVSEASEEIALSKKLVERKNG >gi|284795541|gb|ADDQ01000008.1| GENE 20 18874 - 18945 56 23 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQELITSHKRFLLSKTTIYISFY >gi|284795541|gb|ADDQ01000008.1| GENE 21 18942 - 19661 1182 239 aa, chain - ## HITS:1 COG:lin1574 KEGG:ns NR:ns ## COG: lin1574 COG0580 # Protein_GI_number: 16800642 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Listeria innocua # 3 235 4 236 272 258 59.0 6e-69 MGTSMMTQLFGEFFGTMILVLLGDGVCAAVNLKKSKAFASGWVVIALGWGAAVTLAVYMS GYMSPAHLNPAVTVAMAITGNFEWGMVLPYIVAQVLGGFIGGLVVWLAYLPHWNITEDKG AILGTFATGPAVRNYPANVLTEIIGTFVLVFGLLAFSQNDLAAGINPMLVGILVLGLGLS LGGPTGYAINPARDLGPRLAHQIIPVKTKGDSDWAYSWVPIVGPILGASLAAVIYLFTI >gi|284795541|gb|ADDQ01000008.1| GENE 22 19667 - 21496 2099 609 aa, chain - ## HITS:1 COG:SP2185 KEGG:ns NR:ns ## COG: SP2185 COG0578 # Protein_GI_number: 15901992 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Streptococcus pneumoniae TIGR4 # 1 607 1 607 608 743 63.0 0 MTFSIETRRQSIDALKTQHLDVLIIGGGITGAGVALQASAAKMKTGLIEMQDFAEGTSSR STKLVHGGIRYLKTFDVEVVADTVKERAVVQSIAPHIPKADPMLLPIYDEPNATFNLFSV KIAMDLYDQLADVTGTKYANYLLTKEEVLAREPQLKSEGLQGGGVYLDYRNNDARLVIEN IKQAVADGAHAVSRVQAVGFLYNDEGKITGIQAKDLLTDEQFEIHADVVINTTGPWSDKL RGLDKNDSFTPQMRPTKGVHLVVDKSRLNVPQPTYFDTGKQDGRMVFVVPREEKTYFGTT DTDYHGDFQHPTVEQSDVDYLLEVVNNRYPEVQLTIDDIEASWAGLRPLISANGGSDYNG GNNGKLSDKSIDEVIDVVDRYQKNQTDKREIEEVLNHLEDSLVENKVNPSAVSRGSSLER SADGLLTLAGGKLTDYRKMAEGAMKMIQTILAEEYQKEFTLIDSKNYPVSGGKLNPATVD EELEALAKHGVSKGLSEKDALYLAHLYGSNVPTVFEMIDDAKVIPGLTLTETVSLNYAME EEMALTPVDFLLRRTNHLLFMRDRLDQVKAGVIEEMAQHYQWTAEERARHIETLEKVIEE SDLKNLKVG >gi|284795541|gb|ADDQ01000008.1| GENE 23 21517 - 23022 1722 501 aa, chain - ## HITS:1 COG:L0014 KEGG:ns NR:ns ## COG: L0014 COG0554 # Protein_GI_number: 15673228 # Func_class: C Energy production and conversion # Function: Glycerol kinase # Organism: Lactococcus lactis # 1 497 1 498 498 789 77.0 0 MAEEKYIMAIDQGTTSSRAIIFDKKGNKIGSSQKEFTQYFPNAGWVEHNANEIWNSVQSV IAGSLIESGVKPTDIAGIGITNQRETTVVWDKATGLPIYNAIVWQSRQTTPIADQLKEDG YSEMIHEKTGLIIDAYFSATKVRWILDHVEGAQERAENGELMFGTIDTWLVWKLTGDTHV TDYSNASRTMLFNIHDLDWDQEILDLLNIPRVMLPKVVSNSEVYGLTKNYHFYGSEVPIA GMAGDQQAALFGQMAFEPGMVKNTYGTGSFIVMNTGEEPQLSKNNLLTTIGYGINGKVYY ALEGSIFVAGSAIQWLRDGLKMLQTAAESEAVAKASTGHNEVYVVPAFTGLGAPYWDSQA RGAVFGLTRGTTREDFVKATLQAVAYQVRDIIDTMKEDTGIDIPVLKVDGGAANNDFLMQ FQADILNTAVQRAHNLETTALGAAFLAGLAVGFWKDLEEIKAFQEEGQQFEPIMAEEERE DLYEGWQQAVAATQQFKRKNK >gi|284795541|gb|ADDQ01000008.1| GENE 24 23299 - 24765 1196 488 aa, chain - ## HITS:1 COG:no KEGG:EF1931 NR:ns ## KEGG: EF1931 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 488 1 488 488 874 99.0 0 MKVETLLEKKAMRQLLTVQQTILAGGTCSVSDLTAFLAVTKASFEKDLEDLHYFLKPFGQ DCQLTYDGQQLSITLSDFFSLNHLIEAFVKESLKFQLLDYLYRNKEFSIVQLTTKFMISE SSLFRKIKELNQLLAAFDLQIKNGQLQGEELQIRYFYFQLYWYITPYEIHQKKTMSPLNK RIIEGIETGLGFTFNEHNALKVSLWLSITKKRLAVTSKKYQQLRKKMIDFKEDPLFKQVR QLFFRFSSRYSLELDEGESMIHFVFLITMSVLPESAFDEYSLIRGRRSAVSLADTFILEN VVLYYRPHKFEPTLEKTMAYYFSQIHGKLYFFKGELEVFDRAHIWEKEQQLSSRELASFS TTLLEKALACFDETYQPGDSLHELSLVKYLSVLALIEFKMIGEIKIGIHLAMDALYQAAL TQVLMLSLKNMNGTLVERYQPEQTYDLIVTNYQQTSYQGTPEVYVLSELSSTYDVQQLKK KIRALREK >gi|284795541|gb|ADDQ01000008.1| GENE 25 24755 - 26089 1225 444 aa, chain - ## HITS:1 COG:pli0044 KEGG:ns NR:ns ## COG: pli0044 COG0446 # Protein_GI_number: 18450326 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Listeria innocua # 1 436 1 442 454 165 27.0 1e-40 MKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELYEARY ITEEELRRQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIRG SQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENL LPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQEISCDSGIFALNL HPQLAYLDKKIQRNLDQTIAVDPYLQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVR TGLVVANNLEEKTHRFIGSLRTMGTKVGDYYLASTGLTETEGLFFPQTLASIIVRQPAPP LQHGTEILGKLIYDKVTQRVLGAQLCSKNNCLEKINTLALSIQTGQTLTDLLQKDYFYQP ALTNIYDITNLMGASAYWRENDES >gi|284795541|gb|ADDQ01000008.1| GENE 26 26269 - 26625 429 118 aa, chain + ## HITS:1 COG:no KEGG:EF1933 NR:ns ## KEGG: EF1933 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 118 1 118 118 184 100.0 1e-45 MSATKEQLELFLFYLSETHTKSLSLHDLVTSRPRPEEARILLNINEVFTYYHSARVLYTS VPALENNKSEPFFQAFENFYFELKQHFFNEEDETNQLNERLEEMKIAFEQLTDDYNVL >gi|284795541|gb|ADDQ01000008.1| GENE 27 26659 - 26820 220 53 aa, chain + ## HITS:1 COG:no KEGG:EF1934 NR:ns ## KEGG: EF1934 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 53 1 53 53 67 98.0 1e-10 MKQEEVIERLKEELNLPFFNGTLEEKNYSEADYQQIKKELIQYFDDYVRNVEN >gi|284795541|gb|ADDQ01000008.1| GENE 28 27063 - 27503 652 146 aa, chain - ## HITS:1 COG:no KEGG:EF1936 NR:ns ## KEGG: EF1936 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 3 146 1 144 144 262 99.0 2e-69 MVMRPNLGFYVQTINDIVKTTEDIGEVMNPYYEEVRQAIDKNKVNDLTAERIAEIQAKFK EGTEKYELMLKKVGTLKPTPQVLGIHKKFQHAYTEYVAGCNEMILATDPETGIDADLFNA SEEKQDQATDELTFAITRMSNILLKK >gi|284795541|gb|ADDQ01000008.1| GENE 29 27573 - 28109 170 178 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|83643376|ref|YP_431811.1| acetyltransferase [Hahella chejuensis KCTC 2396] # 1 144 6 149 175 70 32 2e-11 MKRKIIFETERLIVREWQSEDKVELKKFLQDENVMYAYEHAFSDEEVANWLKWNLQSYQE YGYGLWALEKKRTGEVIGECGLTNQLVKGESYTEIGYHLCVKEWHKGYAIEAAAATKQYA FDVLNFPEVISTIRDTNLASINVAIRNQMLVRDRYIKTYRGKTMPHYVFSVKNQKNKD >gi|284795541|gb|ADDQ01000008.1| GENE 30 28179 - 30884 3375 901 aa, chain - ## HITS:1 COG:SPy0623 KEGG:ns NR:ns ## COG: SPy0623 COG0474 # Protein_GI_number: 15674699 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pyogenes M1 GAS # 6 899 3 888 893 1125 66.0 0 MSEEKKTQLSEAFYAQDDTVVLEKMNTTTDGLSAQEAQKRLETYGENVLDEGKKKSLAVK FFEQFKDFMIIVLLAAAVISAVFSHDVVDSIIILVVVILNAIFGVIQEAKAEQAIEALKE MSSPNANVRRDGHVITVKSDELVPGDIVLLEAGDVVPADLRLLEANSLKIEEAALTGESV PVEKEVTILEGTDIGIGDRINMAYSNSNVTYGRGLGVVVGTGMNTEVGKIAGMLASEQET ETPLKQNLNQLGKMLTIAILVIAAVMFVVGMMNGRSWIDMLLTSISLAVAAIPEGLPAIV TIILALGTQKMAKKNAIVRKLPAVETLGSTDIICSDKTGTLTLNQMTVEALYTDGQVLSA STEIPADNMALKIMNFTNDTKIAQDGSLIGDPTETALVQFGLDHAFNVTEKVAAEPRVAE IPFDSDRKLMTTVHELKTGGFLVSVKGAPDELLKRCTEILSNGETSPLDETKRQEILKTN TSLAKQALRVLGMAYKYVETIPAEMSSELVEKDLTFAGLVGMIDPERKEAADAVKVAKEA GIRPIMITGDHRDTAEAIAARLGIIKEGDDDAVITGAELNELSDEKFAQVVGHYSVYARV SPEHKVRIVKAWQQEGKVVAMTGDGVNDAPALKAADIGIGMGITGTEVSKGASDMVLADD NFSTIIVAVEEGRKVFSNIQKTIQYLLSANLGEVLTLFIATMLNWDTLLPVHLLWINLVT DTFPAIALGVEPAERDVMSHEPRGKKSNFFSGGVLSSVVYQGITQGALTLIVYKMSIMFP AHTVANTNLSAQALYDLQHGDALTMAFATLGLIQLFHAFNVKSIYQSIFKVGLFRNKSFN YGILVSFLLLAATIVIPGFNDLFSVTHLDAYQWAIVAGTSFAIIPIVEIVKFFQRKAGKG A >gi|284795541|gb|ADDQ01000008.1| GENE 31 31202 - 31852 603 216 aa, chain - ## HITS:1 COG:no KEGG:EF1939 NR:ns ## KEGG: EF1939 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 216 1 216 216 355 99.0 6e-97 MWKKKIVLSFLFYLISALGISLTIQAGVGVSSFNAFNVTFATLTHLKVGTVTTAINFAFL GTCWLLDQQRKIQDYLIILVALIGFGFVINFFLYQLFGSLVFQNYLVKIVLFILGTIIAG IGTGQVVALGILQFPIEKFCTLISERTRYSFQFYRYLVDIFCVSLALGLSISYHLPIFVR EGTVISLFLLSWVISWSRKRGQQRILRIQIKKLESE >gi|284795541|gb|ADDQ01000008.1| GENE 32 31941 - 32606 563 221 aa, chain + ## HITS:1 COG:ECs3055 KEGG:ns NR:ns ## COG: ECs3055 COG0664 # Protein_GI_number: 15832309 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Escherichia coli O157:H7 # 22 219 2 208 219 114 33.0 2e-25 MLKTAYQRSPKQELAKNTPFFNETDLKHSFIIDFENQEFIHHQAEPLNYLFYLIKGKAKI LKTERNGRQSIVQFLTTGDLIGDLTLVQAETITKDVIALGETCCLAVPLAYAETVLKKKV LFMQQLSHYLGKKMLQRVDHFTTNQTYELSYRLAELLLVAANHEDVYKEKHTEIAEYLGV SYRHLIYTFKQFRERGFIQKQGTTYHINRLALHSFVQKMKS >gi|284795541|gb|ADDQ01000008.1| GENE 33 32678 - 33073 535 131 aa, chain + ## HITS:1 COG:no KEGG:EF1941 NR:ns ## KEGG: EF1941 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 131 1 131 131 233 98.0 2e-60 MEQASFTVSSWQEQPIDNLNENFPVNQASATYQLSGALSGTASVEYLMTYQGSSMADGLE AVAQVVGFLHFEGTYLGKKGTFTACEKGTFTQGLLDCPGELFQASDELAGLSGRYTYEFS QEEALLHLDFV >gi|284795541|gb|ADDQ01000008.1| GENE 34 33183 - 34364 1037 393 aa, chain + ## HITS:1 COG:lin2916 KEGG:ns NR:ns ## COG: lin2916 COG0477 # Protein_GI_number: 16801975 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 2 381 3 386 396 268 43.0 1e-71 MKNTRNTVPSLLIIILLVGFPQISESIFTPILPALSSAFNIHDSVAQLTMSIYFVAFAVG VLFWGILSDTIGRRPAMLLGILCYLIGNIGLFLSPTFPWLLFFRLIQAFGASVGSVITQS MMRESFNDLQRGKIFAQTSAALSLSPAIGPLVGGLVQTYFGYQHVFSTLIVMAVLLLFYS FYRLPETFHLGNTLTKAPFWSVAKRLSFDSKVWCYGLLIGGINGLLFSYYAEAPFIFINH FGFSSVQYGFLGLVLAVSSILAAVLINWLLGYWSAEKIAFAGLLLSIFAACCLLIMTQFE TIIGLILFIFLFFLGINITLPNALSMALKGYESVIGTASGIFSFVYYLFVSFFTYLISYF HNGTIWVLPLYFLSFACLLAFSYYVIVYRKTLK >gi|284795541|gb|ADDQ01000008.1| GENE 35 34401 - 35939 1476 512 aa, chain - ## HITS:1 COG:mll7848 KEGG:ns NR:ns ## COG: mll7848 COG1368 # Protein_GI_number: 13476512 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Mesorhizobium loti # 3 510 128 641 653 178 28.0 3e-44 MFYRVEPIYPDDLKMITEVSLLKEMVGLWPFIFVVALGCVALFFLGKAFYKSFFLSKKKQ TIRVLSLVLSIGLFSYIGDFNNPQNLLRKAYNKTALWIPYSQKMNYYNTGFIGGFLYNLK VEAMDQPKGYSKEAISEITQKYQKLAEAKTVPSNEQPNIVFVMSESFSNPDHLKGLSIIG NPLADYQQIADKTYSGQMLSQNYGGGTANIEFEALTSFSMELLNAQMTTPYTMMIPKMTE LPSIVSLLKEQKYQTTAIHPYNTSMYKRKDVYKILGFDQFINEKTMNYTDKLENNPYISD QAAYQEVTTLLKEKEQPQFIHLVTMQTHMPYENKYTTSNYFSQGNGNQVALNNYLQDIAY SSEALKNFLQEIEKMPKRTLVVFWGDHLPSIYDENIQALNEGAALHQTEFLMYDTANQLT EKNQHQATISPFYFAPSLFQQSGLPQSGFYAMLNEVQEQLPAFEKGNYYLGGEWKKTVEM NKKQEQLYEEYRLIQYDIVSGKQYSLENQFFS >gi|284795541|gb|ADDQ01000008.1| GENE 36 36341 - 36442 96 33 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLFVAKIIFQWYSNNGISLSVIVAFLEYFMKGE >gi|284795541|gb|ADDQ01000008.1| GENE 37 36445 - 36594 251 49 aa, chain + ## HITS:1 COG:no KEGG:EF1947 NR:ns ## KEGG: EF1947 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 49 1 49 49 79 100.0 3e-14 MTYKVKNIQYRIQLDTDKNIFIVFDAKNESKTATGHTIEEAIAHLKQLN >gi|284795541|gb|ADDQ01000008.1| GENE 38 36745 - 37104 301 119 aa, chain + ## HITS:1 COG:lin0899 KEGG:ns NR:ns ## COG: lin0899 COG5646 # Protein_GI_number: 16799972 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 2 110 8 116 130 101 49.0 3e-22 MTIIANYIRQQPQHQTQLTEIYQAILAVVPQETTEKIAYGMPTFYLNGNLVHFAAAKQHL GFYPTPSAIQRFSKELRPFKTSKGAIQFPYTQELPLSLIQEIVKFRVQENMKSVGQKSL Prediction of potential genes in microbial genomes Time: Sun May 15 12:19:50 2011 Seq name: gi|284795540|gb|ADDQ01000009.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont19.1, whole genome shotgun sequence Length of sequence - 3370 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 2195 1827 ## EF0503 hypothetical protein 2 1 Op 2 . - CDS 2182 - 3369 888 ## EFA0031 hypothetical protein Predicted protein(s) >gi|284795540|gb|ADDQ01000009.1| GENE 1 2 - 2195 1827 731 aa, chain - ## HITS:1 COG:no KEGG:EF0503 NR:ns ## KEGG: EF0503 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 731 1 731 752 1353 98.0 0 MQGNNLFNNGLLQPKKPPIGQEQQKMTRYHQLRLVFGLVGVLLYPFAILGSIPLLIGLAV DKKDKAANVFDMDYESFLKRNSIVFLSFSAVLFVINVFAFILWIPRGYLSAYLLFPLNLL HTALRFNWETIVALLIGSSGMGAIFLAFSSFVAKRKVISKEDERKKITESKAYKDREKNK FEESQRFTDEQEEAYEEAVETVDIDKYKELSNQLLLGTSEFGLPYIINFSEFNQHVLVPA TTGSGKTTLLQLLVQHAVKFNFPVILIDGKGARDTLESMREIAKFYDKEVHAFTDDGDMR YNPVEHGNDISIRDKLVSLAETESVFYSGAAKALLQVTIQLLDEFKGAKVTLSGDTRTTE TVERSLPFVQRFLLPRNVLHLFADAILPNNPKLFEIEVEKKIQKPKKKSVKEGSEILPDS DLDKEEKEEDSQIKNSKFRNISQLGIAQKETETIVLNPETLDLDSYYLLLKRNLRYLPTD KETGENIKQKLFERLFIRYEHKDSPFYLYATSEALQTNINMLLDSELGKLFDTKNAKNVL DVQEIVNQRKLVYVSFNGLIYKEYIRTLAQMLVGDVNYFASEMYRKNVKREVLVIFDEPA SYLNETFIDMVNKGRGAGVYGIFTPQTMADIAKLGDKLMEQLVGNVNTLFIGKTNEKGEA EYWSETMGTYQDIDVTSVTEQEDGYSDVGKSDWSGDRGTKRNVDRFKISPNKIKELRTGE FIIYRTAENVN >gi|284795540|gb|ADDQ01000009.1| GENE 2 2182 - 3369 888 395 aa, chain - ## HITS:1 COG:no KEGG:EFA0031 NR:ns ## KEGG: EFA0031 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 395 387 781 781 667 99.0 0 TFGMTIFMKGMVGFATIFFASFLSLGFQLSNQTENVWQKILTILIYLLTPLGLYVFRKFF ANLVTGRVSLSDGVGFIGNPFGTEANMRRAAKEQKQENKERRKQAQEERKAAIKKRQEEA RKHGKAETGLKQRPLNKEQEKRSALRRELKPRPQHKAPNAIEKAQEGLRQAHEKGRMQEQ KSEEQLKRQQQESARQKEYEKDRLKKQESLKKINDQSDESTNLTALRNQNRRTGQRSKKR ETGHQTLMKRQGEKVLQPTNKPKDMKKQVVARSPRRTGQPTTRQNIQPKVAAQTVKRSGG TLGSNPAYRRPEVRKKMDQVKQVTQVDVPQTHSTPQRVQPKVNEPITRMNRHNTPIIKKE KRTKQSPVVRRERKKPGTQKITNKPKGVRQPRARK Prediction of potential genes in microbial genomes Time: Sun May 15 12:20:17 2011 Seq name: gi|284795539|gb|ADDQ01000010.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont31.1, whole genome shotgun sequence Length of sequence - 43730 bp Number of predicted genes - 49, with homology - 49 Number of transcription units - 22, operones - 8 average op.length - 4.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 28 - 87 8.4 1 1 Tu 1 . + CDS 288 - 455 365 ## EF2784 hypothetical protein + Term 536 - 597 20.5 - Term 530 - 578 16.5 2 2 Op 1 . - CDS 618 - 2456 1924 ## EF2785 hypothetical protein 3 2 Op 2 . - CDS 2470 - 2820 529 ## COG3189 Uncharacterized conserved protein - Prom 2840 - 2899 1.8 - Term 2895 - 2932 6.4 4 3 Op 1 2/0.000 - CDS 2942 - 3340 575 ## COG0607 Rhodanese-related sulfurtransferase 5 3 Op 2 5/0.000 - CDS 3356 - 4327 1106 ## PROTEIN SUPPORTED gi|116517028|ref|YP_816079.1| glucokinase 6 3 Op 3 3/0.000 - CDS 4328 - 4546 440 ## COG4483 Uncharacterized protein conserved in bacteria 7 3 Op 4 4/0.000 - CDS 4564 - 5274 736 ## COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) 8 3 Op 5 . - CDS 5285 - 5827 649 ## COG0212 5-formyltetrahydrofolate cyclo-ligase - Prom 5847 - 5906 4.0 9 3 Op 6 . - CDS 5915 - 6685 780 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 6815 - 6874 5.3 + Prom 6768 - 6827 8.4 10 4 Tu 1 . + CDS 6850 - 7425 726 ## COG3152 Predicted membrane protein + Term 7439 - 7472 3.1 + Prom 7427 - 7486 8.0 11 5 Op 1 . + CDS 7530 - 9080 684 ## EF2794 hypothetical protein 12 5 Op 2 . + CDS 9101 - 10165 778 ## EF2795 LysM domain-containing protein + Term 10370 - 10419 16.5 13 6 Tu 1 . - CDS 10410 - 11474 611 ## EF2796 hypothetical protein - Prom 11662 - 11721 5.4 - Term 11641 - 11693 4.2 14 7 Tu 1 . - CDS 11730 - 11981 458 ## EF2797 hypothetical protein - Prom 12010 - 12069 6.1 - TRNA 12071 - 12160 62.4 # Ser CGA 0 0 - Term 12196 - 12243 8.3 15 8 Op 1 . - CDS 12256 - 12405 267 ## PROTEIN SUPPORTED gi|29377324|ref|NP_816478.1| ribosomal protein L33 - Prom 12453 - 12512 5.8 16 8 Op 2 . - CDS 12531 - 14669 2130 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 - Prom 14728 - 14787 8.3 - Term 14773 - 14820 15.2 17 9 Tu 1 . - CDS 14834 - 16771 2692 ## COG0441 Threonyl-tRNA synthetase - Prom 16880 - 16939 6.5 18 10 Tu 1 . - CDS 17168 - 17347 287 ## COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog - Prom 17377 - 17436 6.6 - Term 17407 - 17455 7.1 19 11 Tu 1 . - CDS 17513 - 18958 1505 ## COG1376 Uncharacterized protein conserved in bacteria - Prom 19035 - 19094 4.8 20 12 Tu 1 . - CDS 19105 - 19968 777 ## EF2861 aminoglycoside 6-adenylyltransferase - Prom 20143 - 20202 5.6 + Prom 20000 - 20059 9.5 21 13 Tu 1 . + CDS 20090 - 20671 612 ## COG1434 Uncharacterized conserved protein + Term 20674 - 20722 15.6 + Prom 20710 - 20769 4.0 22 14 Tu 1 . + CDS 20829 - 21773 1325 ## EF2863 endo-beta-N-acetylglucosaminidase + Term 21811 - 21856 5.6 - Term 21866 - 21900 4.3 23 15 Tu 1 . - CDS 22052 - 22870 614 ## EF2864 hypothetical protein - Prom 23030 - 23089 7.7 - Term 23036 - 23088 16.5 24 16 Op 1 . - CDS 23117 - 23836 1137 ## COG0217 Uncharacterized conserved protein - Prom 23860 - 23919 3.4 25 16 Op 2 3/0.000 - CDS 23923 - 25101 990 ## COG1323 Predicted nucleotidyltransferase - Prom 25123 - 25182 4.8 - Term 25131 - 25169 -0.7 26 16 Op 3 6/0.000 - CDS 25191 - 25931 784 ## COG0500 SAM-dependent methyltransferases 27 16 Op 4 6/0.000 - CDS 25933 - 26082 136 ## COG0799 Uncharacterized homolog of plant Iojap protein - Prom 26183 - 26242 3.5 28 16 Op 5 9/0.000 - CDS 26318 - 26908 921 ## COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism 29 16 Op 6 7/0.000 - CDS 26886 - 27545 602 ## COG1057 Nicotinic acid mononucleotide adenylyltransferase 30 16 Op 7 2/0.000 - CDS 27563 - 27874 286 ## PROTEIN SUPPORTED gi|15901580|ref|NP_346184.1| hypothetical protein SP_1748 31 16 Op 8 6/0.000 - CDS 27898 - 29007 1324 ## COG1161 Predicted GTPases 32 16 Op 9 . - CDS 29004 - 29531 620 ## COG2179 Predicted hydrolase of the HAD superfamily - Prom 29690 - 29749 10.2 - Term 29696 - 29746 3.1 33 17 Op 1 10/0.000 - CDS 29753 - 30541 1017 ## COG0825 Acetyl-CoA carboxylase alpha subunit 34 17 Op 2 4/0.000 - CDS 30543 - 31409 817 ## COG0777 Acetyl-CoA carboxylase beta subunit 35 17 Op 3 4/0.000 - CDS 31504 - 32874 1526 ## COG0439 Biotin carboxylase 36 17 Op 4 4/0.000 - CDS 32882 - 33307 558 ## COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases 37 17 Op 5 4/0.000 - CDS 33311 - 33799 628 ## COG0511 Biotin carboxyl carrier protein 38 17 Op 6 11/0.000 - CDS 33801 - 35036 1542 ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase 39 17 Op 7 26/0.000 - CDS 35055 - 35792 214 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 40 17 Op 8 3/0.000 - CDS 35796 - 36725 1144 ## COG0331 (acyl-carrier-protein) S-malonyltransferase 41 17 Op 9 . - CDS 36758 - 37714 1039 ## COG2070 Dioxygenases related to 2-nitropropane dioxygenase - Prom 37788 - 37847 1.8 42 18 Op 1 . - CDS 37851 - 38078 536 ## EF2884 acyl carrier protein 43 18 Op 2 4/0.000 - CDS 38131 - 39096 1016 ## COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III 44 18 Op 3 . - CDS 39112 - 39552 542 ## COG1846 Transcriptional regulators - Prom 39594 - 39653 4.5 + Prom 39446 - 39505 7.7 45 19 Tu 1 . + CDS 39650 - 39799 62 ## gi|293382485|ref|ZP_06628420.1| hypothetical protein HMPREF9377_00373 + Term 39972 - 40010 -0.0 - Term 39867 - 39918 8.7 46 20 Tu 1 . - CDS 39942 - 40172 314 ## EF2888 hypothetical protein - Prom 40200 - 40259 7.0 47 21 Tu 1 . - CDS 40273 - 41163 1220 ## COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases - Term 41177 - 41232 11.9 48 22 Op 1 25/0.000 - CDS 41236 - 42459 1364 ## COG0438 Glycosyltransferase 49 22 Op 2 . - CDS 42506 - 43501 1173 ## COG0438 Glycosyltransferase - Prom 43629 - 43688 6.3 Predicted protein(s) >gi|284795539|gb|ADDQ01000010.1| GENE 1 288 - 455 365 55 aa, chain + ## HITS:1 COG:no KEGG:EF2784 NR:ns ## KEGG: EF2784 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 55 1 55 55 72 100.0 4e-12 MKKFVSGMLVGTAITVAALAGVATTIKKTVIDPIEEKEDMIEENRKKAMRKRIAR >gi|284795539|gb|ADDQ01000010.1| GENE 2 618 - 2456 1924 612 aa, chain - ## HITS:1 COG:no KEGG:EF2785 NR:ns ## KEGG: EF2785 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 612 1 612 612 1234 99.0 0 MKIAIVGAGPRGLSAAERVIEWARKTEINVQLTLFDPYGPGGKIWRAEQPNYLLMNTVIS QVTLFTDESFSGEGPIVKGPTLYEWTQTEAAQYIQQQQPYDYLELLKECHRLGPNDHCSR AFYGMYQKWFYTYLATRCNEQTSLTFFKEPVTAVRAGEDNYYVYTQSIEFTADKVILALG HQENELTTVEQELADYAKEHRLFYSSPKNAADALLALANIPAKQPVVLKGLGLAFFDYLS ALTIGRGGVFSRQNGRLRYKPSGREPIIIAGSGRGFPSHPRGINQKGYGETYQPVFLTET YLAECRKKGQVTGAEFFGYLKKEVEYVYYTCLIEEKYPHLSKEAFQQLFIQTKGAPESLA HFEKQDWFDWQALEHPETKKTTHESFRSFLLEYLKWDIQEAEKGNLSGPLTTALDSLKDL RDQIRFVLDEGLLTNDESQKWLWHWFTPLNTFLSVGPSVERTEELQALVELGLVTILGPE MRVEMKAGQFITYANLFPENRYNSHFLIEARIPKVNNEKSLNPLTRQLLADKLATLHQLA LADGQIVKTGALLIVPATNQVITKDGQVATGLFSCGIPTEGIHWLTAAAARPGVDPWNMR DMDRIAATIFNS >gi|284795539|gb|ADDQ01000010.1| GENE 3 2470 - 2820 529 116 aa, chain - ## HITS:1 COG:BMEII0787 KEGG:ns NR:ns ## COG: BMEII0787 COG3189 # Protein_GI_number: 17989132 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Brucella melitensis # 2 116 4 115 116 116 54.0 1e-26 MIQIKRAYEAPTEQDGYRVLVDRVWPRGKSKESEKLDEWLKEVAPSTELRKWFNHEANKY PEFKQKYQEELKHEPTATAFKQLQTIVKNQPVVTLVYGAKDTVHNQAVVLKELLEK >gi|284795539|gb|ADDQ01000010.1| GENE 4 2942 - 3340 575 132 aa, chain - ## HITS:1 COG:lin1388 KEGG:ns NR:ns ## COG: lin1388 COG0607 # Protein_GI_number: 16800456 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Listeria innocua # 22 130 18 126 126 117 55.0 5e-27 MSILWVINGILLVIVLAMVFNELYLKIMVKRSAKMLTEEEFKETMRKAQVIDVREKDTFD AGHILGARSMPYSMLKTTIGSLRKDQPVYLYDQKKALSIRAANLLRKNGYTDIYILKGGY DGWTGKVKKRNS >gi|284795539|gb|ADDQ01000010.1| GENE 5 3356 - 4327 1106 323 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116517028|ref|YP_816079.1| glucokinase [Streptococcus pneumoniae D39] # 1 318 1 319 319 430 64 1e-120 MDKKIIGIDLGGTTIKFAILTTDGVVQQKWSIETNVLEDGKHIVPSIIESIRHRIDLYNM KKEDFVGIGMGTPGSVDIEKGTVVGAYNLNWTTVQPVKEQIESALGIPFALDNDANVAAL GERWKGAGENNPDVIFITLGTGVGGGIVAAGELLHGVAGCAGEVGHVTVDPNGFDCTCGK RGCLETVSSATGVVRVARHLSEEFAGDSELKQAIDDGQDVSSKDVFEFAEKGDHFALMVV DRVCFYLGLATGNLGNTLNPDSVVIGGGVSAAGEFLRSRVEKYFQEFTFPQVRNSTKIKL AELGNEAGVIGAASLALQFSKEK >gi|284795539|gb|ADDQ01000010.1| GENE 6 4328 - 4546 440 72 aa, chain - ## HITS:1 COG:SPy1530 KEGG:ns NR:ns ## COG: SPy1530 COG4483 # Protein_GI_number: 15675429 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 62 1 62 67 66 59.0 9e-12 METLYDVQQLFKQFGMYIYVGARIYDIELMMIELKKLYEGQLVDRDTYLQARHILQREHR IEESRGKQKGID >gi|284795539|gb|ADDQ01000010.1| GENE 7 4564 - 5274 736 236 aa, chain - ## HITS:1 COG:lin1374_1 KEGG:ns NR:ns ## COG: lin1374_1 COG0705 # Protein_GI_number: 16800442 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein (homolog of Drosophila rhomboid) # Organism: Listeria innocua # 6 183 173 345 345 137 41.0 2e-32 MNYQTEMKLKRLKNQPFITYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNH EYWRFITPMFLHIGFMHIILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFG TPNSVSAGASTALFGLFGAFVILGRHFRDNPAIMYMVQRYSMFIVINLLFNLFSSSVDMM GHVGGLIGGLLVATAFAVPNREEAFNKHERIMATLIFIFLVVICLLLGFKKYGLPV >gi|284795539|gb|ADDQ01000010.1| GENE 8 5285 - 5827 649 180 aa, chain - ## HITS:1 COG:lin1373 KEGG:ns NR:ns ## COG: lin1373 COG0212 # Protein_GI_number: 16800441 # Func_class: H Coenzyme transport and metabolism # Function: 5-formyltetrahydrofolate cyclo-ligase # Organism: Listeria innocua # 25 177 22 176 179 117 42.0 1e-26 MEKNKLRKVGLTALEWLKQHPEIKQHKESSLYEQLFASQQWQQAQTIGMIRSLPLELSTQ PIFERAMQESKQVAVPRTFKGGKMHFYQVFPETVYDTSAFGVEEPPLTAAEITATAIDLL IVPGIVFNRAGYRIGFGGGFYDRYLEHFSGHSCSLVFSEQLHEQWQPEAFDQPIEQLFIQ >gi|284795539|gb|ADDQ01000010.1| GENE 9 5915 - 6685 780 256 aa, chain - ## HITS:1 COG:lin2363 KEGG:ns NR:ns ## COG: lin2363 COG1073 # Protein_GI_number: 16801426 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Listeria innocua # 3 249 2 248 250 169 36.0 6e-42 MKISIRHRYIAKIPALEVTTEEQKNEALPLIVYYHGWQSAKELSLTQARKLAHEGFRVIL PDAMNHGERKTGPISTIPSITFWSSIQYNLIEFPVIIHHFHKLGLIKENWIGVGGVSMGG ITTSALMTQHPEIQAAACLMGTPYPARYIQRVIQRAKEFAIFVPKDLPLLLSWVHQYDLS QTPERLQERPMLFWHGTEDEKIPYEDMADFEQLVSGKTYARNTQFITEIGERHLVKGETM DLVVDFFKEASKTLEK >gi|284795539|gb|ADDQ01000010.1| GENE 10 6850 - 7425 726 191 aa, chain + ## HITS:1 COG:L133792 KEGG:ns NR:ns ## COG: L133792 COG3152 # Protein_GI_number: 15673282 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 8 185 3 169 175 62 28.0 5e-10 MVKIEEKGKVTFGQAFKDYFRGYVDFKGRTTRAGYWWMTLVLSILALIFYIAIVGKAVSA ILAAEYFETYDFGNLLPLMLFALVLWLALLLPTWAMCVRRYRDAGMTGWGVLVLYLLSIA CSYTQVFSVMSTLKYDVQTDTVITGGSPVFLFFTLVISLFFFLLTVLPTDKLTTTSQNSV LRFFFRYKEVK >gi|284795539|gb|ADDQ01000010.1| GENE 11 7530 - 9080 684 516 aa, chain + ## HITS:1 COG:no KEGG:EF2794 NR:ns ## KEGG: EF2794 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 516 1 516 516 872 99.0 0 MATFKRILNLENYIFTFFILFVFYGAINSPYSLVKILWEKPKHLLVLLPLLIILLLIIYK NKKFLYTKIQALWHLIKTHDRVVIIGSLVSLFLLQLLLLTQITVPIGWDVFDNFHSITTE NRDYSKIVLSLNPNNEFFFFMMYYLNKFLRFIDVTGSWSNTWFSWQVVNCLFINSSLFLF YHASKRVFNPLTAFVAYSLFFLSFGLSPWLLTPYTDTAVLLFINLVFFAYSLFNQVSPPF VKYCLLLFIGIGLAWCFLMKPSSIIFFIAFSCIKVLQLLLVNRNKQSIVKLTVVALFLLT GFASAYYSFQFFVEKQTITEIDKEQAKPWTLFVMMGLTGTGGYNDADTQAVNQLPTQEAK KAYTIKMIQDRLKNKGFFGYLRFLAQKNRHNTANGDFDWGWDGGDLIPETPSKNRWQEHL RSLYYPQNQKSNYLRIYMHFFYLLTLLGLLFSIPLKDSKNNYAILKLAFIGAILYLLLFE GGRSRYLIQFMPFWYLLSASGWLGLREIRRYKKIVK >gi|284795539|gb|ADDQ01000010.1| GENE 12 9101 - 10165 778 354 aa, chain + ## HITS:1 COG:no KEGG:EF2795 NR:ns ## KEGG: EF2795 # Name: not_defined # Def: LysM domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 354 1 354 354 565 98.0 1e-160 MKKSLLGLIVFLSLLTLTSCRNKVTTKELMANEWAVNSNVDEVVMIVSFSEDTATFKINT DEHTSTAKNDLEKAGEELGKQIANKIEYKVKYHLKNNQIRWENEGKEVAYKIKKEKQNLL FTPTKTNNSDNQTKLVLKPYTKKSIDSSTQKDKTEETSSNYQNVSSETNQSTSSSTTKEP LPQVSLADFIGGWGIPQSDNLFFINADGTLTSITQSNVPLQNVSFSVDENGNQTMTFLLN NTPRTVTKNNDGTLTVNGQIYTYLGNITLEQLIERNNQTQQVFEQSEQQPPQNSDSREQI QNSKSDQPIYDTVRSGEGGRQLSERNGLTLEELLALNPGIETSVFYPGQSLRIK >gi|284795539|gb|ADDQ01000010.1| GENE 13 10410 - 11474 611 354 aa, chain - ## HITS:1 COG:no KEGG:EF2796 NR:ns ## KEGG: EF2796 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 354 1 354 354 579 99.0 1e-164 MTFYQLLQLDPFILKQKIHQADTKKQRRYFWRALLIRDILLVSFAILWVSTITFFFGKAV APFSIVLFCLLLSIRFVSYGYREKQALLSLGIVLTILGVSPLISLISVSFLQWGLHFICL LALFFLTGKNPKMGNPGLYTFSYLYLVGTVHYQSFQQLEQTFFVLVFAYLLLAFVYHVKH KKLDQEITFIQMVTENGFFNQRNIWFGYYALGISLLLFIGTHLQIDRFMWATFASSSLFS GYDTFKLSERAKERIIGVVIGSLVSAILLFYIPTNLLGILGGLCLGLCTSYKSKTIFNCV GAIMAASMIFGLETSLYLRILLNMLGLAYGLLYHFVFVKTMSYCNRKEWLKLSE >gi|284795539|gb|ADDQ01000010.1| GENE 14 11730 - 11981 458 83 aa, chain - ## HITS:1 COG:no KEGG:EF2797 NR:ns ## KEGG: EF2797 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 19 83 1 65 65 70 96.0 1e-11 MSNYEEKEAQALAKIADVLNKLDASLEELGSLDEDTKKHSMKKWIVEKKAIHEIKKIAHE AGKYDKYDEKELEKEMDLLEKFM >gi|284795539|gb|ADDQ01000010.1| GENE 15 12256 - 12405 267 49 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29377324|ref|NP_816478.1| ribosomal protein L33 [Enterococcus faecalis V583] # 1 49 1 49 49 107 100 1e-22 MRVNITLECTSCKERNYLTNKNKRNNPDRLEKQKYCPRERKVTLHRETK >gi|284795539|gb|ADDQ01000010.1| GENE 16 12531 - 14669 2130 712 aa, chain - ## HITS:1 COG:SP1673 KEGG:ns NR:ns ## COG: SP1673 COG0768 # Protein_GI_number: 15901508 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Streptococcus pneumoniae TIGR4 # 27 710 9 677 680 535 42.0 1e-151 MKKNSFIDKIKKTDAAAKSQRGRKPHIPFRLNLLFFVIFTLFVSLIVRLGYLQIVEGEEF NKKITANSSLQITTPSPRGQIYDSQGKVLVSNKANLAITYTRGKNIEGKDILPIANKVNE LINVPVDPNLTDRDKKDYWLANPENLKAAQARLTDQDKEDEKGNKITDEGTLYAKAVEKV TPEEIAFDDRTLQAVTIFKRMNAASQMNTVFIKNEGVTEGEIATIGEHTAEISGVSTGTD WTRDYSQSGALRSLLGTVSTEKQGLPAEEVDEYLKKGYARNDRVGTSYLEKQYEDVLQGK KAKSEVVLDNNGKIVSQTPISKGEKGSNLKLTIDSNFQNKVDEILQRNYSQIVKTIGPYS ENAYVVAMNPQTGAILAMSGVSHDLQTGEVTPNPLGPILNFEVPGSVVKAGTLTAGYEAK VLQGNDTLLDEPIILAGTNPKASWWNSGGRNAQMQLTAEQTLEYSSNAYMMKVVFKLMGV NYYPNMVFPYEIGDDKVFKELRNAYAEYGMGIKTGIDLPGESPGYVNKDFKDPAEAPKGG NLLDLSFGQYDNYTPLQLAQYVSTVANNGIRVQPHVVEGIYGNDENGALGKILKEIEPKV LNKVNISEDQIGILQQGFYNVVNGTSQLTTAPGLKSDKFSIAAKTGTAETQAKDANGVVH TTVNSNLVAYAPYENPEIAISVVLPHLNDEESKPNQTIAKEVLEAYMEMYKK >gi|284795539|gb|ADDQ01000010.1| GENE 17 14834 - 16771 2692 645 aa, chain - ## HITS:1 COG:SPy0517 KEGG:ns NR:ns ## COG: SPy0517 COG0441 # Protein_GI_number: 15674621 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Threonyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 3 645 2 642 647 985 73.0 0 MSIHITFPDGAVKPFDSGVTTFDVAKSISNSLAKKALAGKFNGVLIDLDRPIVEDGSLEI VTPDHEDALGILRHSSAHLMANALRRLFPNIKFGVGPAIDSGFYYDTDNGESPVTAEDFP AIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLPEDEIITIYDQGDFVDL CRGVHVPSTGRIQVFKLLSVAGAYWRGNSDNHMMQRIYGTAFFDKKDLKEFIKMREEAKE RDHRKLGKELDLFMVSQEVGSGLPFWLPKGATIRRTIERYIVDKEISLGYQHVYTPIMAD VELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDIHSYRELPIRIAEL GMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTLELMVAVYADFNITDYRF RLSYRDPNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDVQVKTAL GMEETLSTIQLDFLLPERFDLTYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAF PTWLAPIQATIIPVSVEAHSEYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPY QLVVGDKEMEDATVNVRRYGSKETSVEDLSIFIDSMAAEVHNYSR >gi|284795539|gb|ADDQ01000010.1| GENE 18 17168 - 17347 287 59 aa, chain - ## HITS:1 COG:L168282 KEGG:ns NR:ns ## COG: L168282 COG1942 # Protein_GI_number: 15672556 # Func_class: R General function prediction only # Function: Uncharacterized protein, 4-oxalocrotonate tautomerase homolog # Organism: Lactococcus lactis # 1 59 1 59 61 65 59.0 3e-11 MPFVHVELIEGRTEEQLTNMVKDITEAVSKNAGAPKENIHVIVNELKKDRYAQGGEWKK >gi|284795539|gb|ADDQ01000010.1| GENE 19 17513 - 18958 1505 481 aa, chain - ## HITS:1 COG:CAC0747 KEGG:ns NR:ns ## COG: CAC0747 COG1376 # Protein_GI_number: 15894034 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 6 460 1 465 466 112 24.0 1e-24 MKKEEMQMRNTRRQKSGKNNKKKVIITSLVGLALVAGGSYVYFQSHFLPTTKVNGVSVGW LNVNAAEEKLAQVNQTEEVVVKTGTKEEKIQLPKKYQLDQKFLKDHLHSSKVKLPLNEAF KKELEAKLATLSFPEGKPSKNASIRRGNGTFEIVPEEQGTVVDTQRLNQQIIADVEAGKG NYQYNAKDFYKAPEITKEDQTLKATLTTLNNKLNKTITVDINGEKVAFDKTQIQNVLNDD GTINKEKLTTWVTQLETTYGSANQPVLFTDVHGTTRRFKNNGSYGWSIDGAKTQELLVNA LNSQEQTNAITAPLVGDTKENSKIANNYIEIDLKDQKMYCFIDGKKIVTTDVITGRYNKG TATVPGFHTILYRTTDVNLEGQMLDGSRYSVPVKYWMPLLSQGGVVTQIGIHDSDHKLDK YGDKEAFKTDAGSNGCINTPGTEVSKIFDVSYDGMPVIIYGHIYDDAPGEFDKPVDYGEE V >gi|284795539|gb|ADDQ01000010.1| GENE 20 19105 - 19968 777 287 aa, chain - ## HITS:1 COG:no KEGG:EF2861 NR:ns ## KEGG: EF2861 # Name: aadK # Def: aminoglycoside 6-adenylyltransferase # Organism: E.faecalis # Pathway: not_defined # 1 287 1 287 287 571 98.0 1e-161 MRTEEEMFQLIMDVAKQEEHIRAVGMVGSRTNVKAPKDSFQDFDIVYIVEPCAEFFETAT WIAKFGQPLIMQRPKEMTLFPTEPKTRETFLMLFEDGQRIDLTLCPLAEKDNWHEGDSLA IILLDKDESLPPLPVASDKNYTVTVPNQQQFNDCCNEFWWVSTYVVKGLCRNELFYAVTH LYEYCQQELLRLLSWQAAWQEPKPISVGKQFKYLRNYVTPDTMDQLASLLDFSSKEACWN SLIKTQAFFDVVAQDFAKMAQFTYHLQEAKKVTEYTNSLRLKDLQGK >gi|284795539|gb|ADDQ01000010.1| GENE 21 20090 - 20671 612 193 aa, chain + ## HITS:1 COG:lin2536 KEGG:ns NR:ns ## COG: lin2536 COG1434 # Protein_GI_number: 16801598 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 11 192 11 188 189 162 45.0 3e-40 MHWLKITSLSIVSFGFCILLILGLLIFTGKNTQPTDKPDAILILGARVLGTSKETALPSR VLQARLDVAIPYIKQHPETPVIVSGGQGADEPATEAAVMKQYLLNKGVPEKQILLENRAT RTKENIVNSQKLLSFKRLVIVTSDFHMYRSQLLAKRAGISNVSGITAASSFPKDIKNFGR ELLSLGYALLFDW >gi|284795539|gb|ADDQ01000010.1| GENE 22 20829 - 21773 1325 314 aa, chain + ## HITS:1 COG:no KEGG:EF2863 NR:ns ## KEGG: EF2863 # Name: not_defined # Def: endo-beta-N-acetylglucosaminidase # Organism: E.faecalis # Pathway: not_defined # 1 314 1 314 314 598 99.0 1e-169 MGHQLSTHFFNKKTGIISTFLSLILLVGGLLFALPAFEVQAASTVTPKTVMYVEVNNHDF NNVGKYTLAGTNQPAFDMGIIFAANINYDTVNKKPYLYLNERVQQTLNEAETQIRPVQAR GTKVLLSILGNHEGAGFANFPTYESADAFAAQLEQVVNTYHLDGIDFDDEYAEYGKNGTP QPNNSSFIWLLQALRSRLGNDKLITFYNIGPAAANSSANPQMSSLIDYAWNPYYSTWNPP QIAGMPASRLGASAVEVGVNQNLAAQYAKRTKAEQYGIYLMYNLPGKDSSAYISAATQEL YGRKTNYSPTVPTP >gi|284795539|gb|ADDQ01000010.1| GENE 23 22052 - 22870 614 272 aa, chain - ## HITS:1 COG:no KEGG:EF2864 NR:ns ## KEGG: EF2864 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 272 1 272 272 434 98.0 1e-120 MLAFFVGLAVLSLTACREPKEKKVTASTEASSKVEETNEKTSETIDKTNEQASSSVESNE SVKNEEPTADGNNSQLTVADLDTTAINAGDFTTLVGTWKNGKGESLIIHPDGGTNTGGMI TKDSPTDESRPITSLSIRWGPTGAALLLYKIGVENPNGDQSDKTKPRLLITQDSGNYPAE EYYYRSSEEENQDQNEEAKIIDTQEKAETYIRKTLTDAENNDTNLGFLGMNGNDFFFRAQ SKQMVANGGTGTVGFYRVSPQGAVRITDARGN >gi|284795539|gb|ADDQ01000010.1| GENE 24 23117 - 23836 1137 239 aa, chain - ## HITS:1 COG:lin0388 KEGG:ns NR:ns ## COG: lin0388 COG0217 # Protein_GI_number: 16799465 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 239 1 239 239 367 79.0 1e-101 MGRKWANIKEKKAAKDANNSRVYAKFGIEIYVAAKSGDPDPHANQKLRFVIERAKTYNVP KHIIDRAIEKAKGSADEQYSELRYEGFGPNGSMVIVDALTNNVNRTAADVRAAFGKNGGN MGVSGAVSYMFDNTGIIGFAGDDADEILEYLMEKDIDVRDVVEEDGQIIVYTEPEDFHHA QEALKEKGIEEFTVTELEMVPQNEVTLEGDDLANFEKMLDVLEDLEDVQKVHHNVDLPE >gi|284795539|gb|ADDQ01000010.1| GENE 25 23923 - 25101 990 392 aa, chain - ## HITS:1 COG:BH2585 KEGG:ns NR:ns ## COG: BH2585 COG1323 # Protein_GI_number: 15615148 # Func_class: R General function prediction only # Function: Predicted nucleotidyltransferase # Organism: Bacillus halodurans # 1 387 1 405 416 307 42.0 2e-83 MKACGIIVEYNPFHNGHRYHAQQARQQSEAEVVIAIMSGNFLQRGEPALLDKWARAEEAL QNGVDLVIELPTAWSVQSADYFAKGGIKLLQALQCESLCFGTDSTSAIDYAAFGQFVQEN QSLIDQTFHALTDKQLSYPQKMTAVFRQVYPESRFDFSSPNHILGMSYAKENATYPTPMT LYPIARKQAGFHDATISGKVASATAIRQSVFQQEITQVLPTVPSITAQHLQTQTMISWEN YWPFLKYKIVQSSLEELQAIYQMTEGLEYRLKDQIQAAGSFHELMERMKTKRYTWTRLQR LATYILLNMTKEEVETVWQNSYLHVLGFTPKGQAYLKETKAQIQLPVISKVSKENRAMLS LDIRANQLYQMGDSSLKEQNFGRFPLRFSPDT >gi|284795539|gb|ADDQ01000010.1| GENE 26 25191 - 25931 784 246 aa, chain - ## HITS:1 COG:L28696 KEGG:ns NR:ns ## COG: L28696 COG0500 # Protein_GI_number: 15672211 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Lactococcus lactis # 3 245 4 244 244 274 56.0 1e-73 MAYETFAFVYDEVMDESLYQKWLDFSNRHLPQGTQQILEMACGTGALAVDFAKSGYDVTA LDLSEEMLMIASERAFEEEVPVQFVQGNMLDLSEVGQYQAITCFSDSLCYMANRQEVQQV FDEVYQALEEEGTFIFDVHSTYKIDSVFPEYSYHYQTEEFAFLWDSYAGEKEHSIEHFLT FFVKEQETDEHFVRYDELHQERTYSLDNYLRMLESAGFMNVKVYADFTDEAPTETSERWF FVCQRD >gi|284795539|gb|ADDQ01000010.1| GENE 27 25933 - 26082 136 49 aa, chain - ## HITS:1 COG:lin1521 KEGG:ns NR:ns ## COG: lin1521 COG0799 # Protein_GI_number: 16800589 # Func_class: S Function unknown # Function: Uncharacterized homolog of plant Iojap protein # Organism: Listeria innocua # 1 46 69 114 118 71 67.0 4e-13 MEGKEGGKWILIDLGDVIVHVFQSSERAFYNLEKLWSDAPMVDLSAWVD >gi|284795539|gb|ADDQ01000010.1| GENE 28 26318 - 26908 921 196 aa, chain - ## HITS:1 COG:SPy0309 KEGG:ns NR:ns ## COG: SPy0309 COG1713 # Protein_GI_number: 15674476 # Func_class: H Coenzyme transport and metabolism # Function: Predicted HD superfamily hydrolase involved in NAD metabolism # Organism: Streptococcus pyogenes M1 GAS # 6 191 5 190 197 179 48.0 2e-45 MSWITNYDAAQRELLMQKVQMQMSERRFRHVLGVEETAVALAAKYGADEAKASIAALTHD YAKERPNDEFELIIRRDGFDLALLNYGNEIWHGLVGADIVQRELAIDDEEILQAIRVHTT GAAKMSLLDKIIYVADYIEPGRDFPGVKEAREIALVDLDAAVAYETKHTLSHLIEQEHKI YPKTLETYNQWVVNQK >gi|284795539|gb|ADDQ01000010.1| GENE 29 26886 - 27545 602 219 aa, chain - ## HITS:1 COG:SP1747 KEGG:ns NR:ns ## COG: SP1747 COG1057 # Protein_GI_number: 15901579 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid mononucleotide adenylyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 17 211 15 209 209 247 62.0 9e-66 MGEKRQARQGADVLLQEEPLRFQTRKQVGLLGGNFNPVHLAHLVMADQVQNQLGLDKVYL MPTYLPPHVDEKKTISSEHRLAMLELAVADNPCLDIEPIELIRKGKSYTYDTMKALKEAN PDTDYYFIIGGDMVEYLPKWHRIDELLHLVQFVGIRRPNYPTESTYPIIWVDVPQMAISS TLIRQKVKSGCSTRYLLPENVINYIQEKGLYQDELDNKL >gi|284795539|gb|ADDQ01000010.1| GENE 30 27563 - 27874 286 103 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15901580|ref|NP_346184.1| hypothetical protein SP_1748 [Streptococcus pneumoniae TIGR4] # 1 103 1 103 103 114 58 8e-25 MKLRGKQKRYLRSQAHHLQPIFQVGKGGLNDAMITQIDEALEKRELIKITLLQNTDEVAE EVAEELTAAIHCDVVQIIGRVLVLFKPSSKEKYQKISAAVKEI >gi|284795539|gb|ADDQ01000010.1| GENE 31 27898 - 29007 1324 369 aa, chain - ## HITS:1 COG:SPy0306 KEGG:ns NR:ns ## COG: SPy0306 COG1161 # Protein_GI_number: 15674473 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pyogenes M1 GAS # 3 369 2 372 372 519 66.0 1e-147 MTEAIHCIGCGAIIQTENPHELGYTPKTAFEKGMETGEVYCQRCFRLRHYNDIQDVQLTD DDFLRLLNGLGTEDALIVNVVDIFDFNGSLIPGLHRFIGDNPVLLVGNKVDILPKSLKKP KMVQWMRERAHEAGLRPVDVLLTSGKKPQEMQELLDTIEKYREGRDVYVVGVTNVGKSTL INQIIQQTVGVQDVITTSQFPGTTLDKIEIPLDDGHFLIDTPGIIHRHQMAHYLGKKDLK IIAPQKEIKPKVYQLNAEQTLFLGGLARFDYVQGAKSSFIAYVSNDLNLHRTKTATADAF YEKHVGGLLQPPRADEVAEFPELVRFEFSVKEKTDIVFAGLGWITVTEPGVVAGWAPKGV DVLRRKALI >gi|284795539|gb|ADDQ01000010.1| GENE 32 29004 - 29531 620 175 aa, chain - ## HITS:1 COG:SPy0305 KEGG:ns NR:ns ## COG: SPy0305 COG2179 # Protein_GI_number: 15674472 # Func_class: R General function prediction only # Function: Predicted hydrolase of the HAD superfamily # Organism: Streptococcus pyogenes M1 GAS # 5 174 25 194 194 189 52.0 2e-48 MFSKYKPTWMIDAIYKITPAQLKKLGIKAVLTDLDNTLIAWNNPDGTEELKTWLLEMKNA GITVLVVSNNKDSRIKRVVEKFDLDYVARALKPTARGFKLAEKKLGLKPSEMLMVGDQIM TDIRGANAAGIRNVLVQPIVDTDGWNTRINRFFERKIMKYLSKKHPEMTWRGGLE >gi|284795539|gb|ADDQ01000010.1| GENE 33 29753 - 30541 1017 262 aa, chain - ## HITS:1 COG:CAC3568 KEGG:ns NR:ns ## COG: CAC3568 COG0825 # Protein_GI_number: 15896802 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase alpha subunit # Organism: Clostridium acetobutylicum # 10 261 13 264 274 324 63.0 1e-88 MEKKTANDVVTLARAQDRLTTLEYIEAIFEDFLEFHGDRYFADDLAVVGGVATLQGKPVT VVGIQKGRNLPENIERNFGSPNPEGYRKALRLMKQAEKFNRPVITFVNTAGAYCGIGAEE RGEGEAIAQNLLEMSDLKVPIISVIIGEGGSGGALALAVADEVWMLEHTIYAVLSPEGFA SILWKDGSRAKEAAELMKITATELKELAIVDKVIPEVMNGQPLKQTKINRMLQKAFISKL TELAKLDTETLLEKRYQRFRKY >gi|284795539|gb|ADDQ01000010.1| GENE 34 30543 - 31409 817 288 aa, chain - ## HITS:1 COG:SP0426 KEGG:ns NR:ns ## COG: SP0426 COG0777 # Protein_GI_number: 15900345 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase beta subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 282 1 283 288 406 68.0 1e-113 MALFKKKNYIRINPNRADANDASKKPSVPDNMWAKCPSCKRTLYTKEMGAEKICPHCGYS FRIGAWERLAITVDEKSFHNWDSELVTKDPLNFPGYLEKIEKMQEKTGLDEAVLTGEATI EGQAVAIGIMDANFIMGSMGTIVGEKITRLFERATEKHLPVVIFTASGGARMQEGIFSLM QMAKISAALQRHNKAGLLYLTVLTDPTTGGVTASFAMDGDIILAEPQSLIGFAGRRVIEQ TIRQELPDDFQKAEFLLEHGFVDQIVPRNLLRQRLSDLLRLHSLEGWR >gi|284795539|gb|ADDQ01000010.1| GENE 35 31504 - 32874 1526 456 aa, chain - ## HITS:1 COG:SP0425 KEGG:ns NR:ns ## COG: SP0425 COG0439 # Protein_GI_number: 15900344 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxylase # Organism: Streptococcus pneumoniae TIGR4 # 1 451 1 452 455 659 73.0 0 MFSKVLIANRGEIAVRIIRACRELGVQTVAVYSEADQEALHTQLADEAICIGPAKATDSY LNVQAVLSAAIVTNAEAIHPGFGFLSENSQFASMCEECNITFIGPKAETIDAMGNKINAR QLMQKAKVPVIPGSDGVIDSVEEALTIAEEIGYPVMLKAAAGGGGKGIRKVLSKEELPKH FTSAQQEAKAAFGNDDMYLEKIIYPARHIEVQILGDQYGHVIHLGERDCSLQRNNQKVLE ESPSIAISEEKRQMLGETAVRAAQAVHYENAGTIEFLMDPAGDFYFMEMNTRIQVEHPVT EMVTGIDLVKAQLEIASGEPLGYTQEDVIMTGHAIECRINAENPAFNFAPSPGKIQNLLL PSGGMGLRVDSAMYSGYSIPPYYDSMIAKVIVHGENRFDALMKMQRALNEIVTEGIITNA EFQLDLITHDNVLTGDYDTSFLQETFLPNWEPESNH >gi|284795539|gb|ADDQ01000010.1| GENE 36 32882 - 33307 558 141 aa, chain - ## HITS:1 COG:CAC3571 KEGG:ns NR:ns ## COG: CAC3571 COG0764 # Protein_GI_number: 15896805 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases # Organism: Clostridium acetobutylicum # 1 140 1 140 141 168 60.0 2e-42 MKLTITEIQEILPHRYPFLLLDSVEEVIPGERVVAKKNVTVNEQVFQGHFPGNPVLPGVL IIESLAQAGAVALLSMPEFKGKTAYFGGLDKAKFRQKVTPGDTLILEVELLKVRASAGMG KGVAKVNGKKVAEAELTFMIG >gi|284795539|gb|ADDQ01000010.1| GENE 37 33311 - 33799 628 162 aa, chain - ## HITS:1 COG:SP0423 KEGG:ns NR:ns ## COG: SP0423 COG0511 # Protein_GI_number: 15900342 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxyl carrier protein # Organism: Streptococcus pneumoniae TIGR4 # 1 158 1 160 161 109 45.0 2e-24 MQLEEVKALLTQFDQSTLTEFDLREGSFELYMNKNTVSGRSAVEPVAQPQETPVAASGVS VPVETVSVAEETPTNTPTANEKTEEITSPIVGIVYLQPAPDKENFVKVGDTVKTGDVVCI VEAMKLMNEITATVDGVITEVLVNNEDVVEFGQPLFRVAKGE >gi|284795539|gb|ADDQ01000010.1| GENE 38 33801 - 35036 1542 411 aa, chain - ## HITS:1 COG:SP0422 KEGG:ns NR:ns ## COG: SP0422 COG0304 # Protein_GI_number: 15900341 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Streptococcus pneumoniae TIGR4 # 1 411 3 410 411 472 57.0 1e-133 MNRVVITGYGVTSPIGNEPETFLESLKTGKNGIGPISKFDVSETGVTLAAEVKDFPMEKC FVKKDGKRMDKFSLFGIYAALEAMAMSGLDTSQLDVDRFGVMVGSGIGGLETIQNQVIRM HDKGPERVAPLFIPMAIGNMVAGNIALRVGAKGICTSTVTACASATHSIGEAFRNIKHGY SDVIIAGGAEAPITEIGISGFASLTALTKATDPEKASIPFDKERSGFVMGEGAGVFILES LDHALERGATILGEVVGYGANCDSYHMTSPTPDGSGAAKAMVLAMEEAGISPEKIGYINA HGTSTQANDSAESKAIELALGDAAKTAYVSSTKSMTGHLLGAAGGIEGIATLNALQHQFI PPTINVENQDEAITVNVVLNESKEHKFDYALSNSLGFGGHNAVICLKRWED >gi|284795539|gb|ADDQ01000010.1| GENE 39 35055 - 35792 214 245 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 6 239 4 238 242 87 28 2e-16 MELTGKNVFITGSTRGIGKAVALAFAKEGANIVLNGRSEITPEQRQEIEAFGVKCIGLSG DISDFDAAGEMIQATVDQLGSIDILVNNAGITNDKLLLRMTKEDFNACLDINLVGTFNMT QQAVKRMMKQRSGRIINMASVSGLMGNVGQANYAASKAGVVGFTKSVAREVAPRGITCNA IAPGFIQTEMTDVLSEKVKTQMNAQIPLQTFGQVEDVAATAIFLAKSPYITGQVVNVDGG LVMHG >gi|284795539|gb|ADDQ01000010.1| GENE 40 35796 - 36725 1144 309 aa, chain - ## HITS:1 COG:SP0420 KEGG:ns NR:ns ## COG: SP0420 COG0331 # Protein_GI_number: 15900339 # Func_class: I Lipid transport and metabolism # Function: (acyl-carrier-protein) S-malonyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 2 303 3 304 306 345 61.0 5e-95 MKTAILFSGQGAQYQGMGEELYHQEAIVRETFDEASHILGYEMAELCFTENERLNETEYT QPAILTVSVAFYRLLQQKGLTPDVVAGLSLGEYSALVASGALRFSEAVALVQKRGQYMTE AAPQGTGKMVAVMNAEREVIEKACQEASAFGIVAPANYNTPQQIVIGGEVAAVDQAMTLL KEAGVKRMIPLNVSGPFHTALLQPASKKLAQDLAKLNFQTMQIPVISNTTAEIMPQEAIQ ALLEKQVMSAVRFEDSIETMKAMNVGTMIEVGPGKTLTGFVKKIDKTIEMHRVEDVATLT ETLTALTGR >gi|284795539|gb|ADDQ01000010.1| GENE 41 36758 - 37714 1039 318 aa, chain - ## HITS:1 COG:SP0419 KEGG:ns NR:ns ## COG: SP0419 COG2070 # Protein_GI_number: 15900338 # Func_class: R General function prediction only # Function: Dioxygenases related to 2-nitropropane dioxygenase # Organism: Streptococcus pneumoniae TIGR4 # 1 317 1 317 324 394 68.0 1e-109 MNQQLCELLGINYPIFQGGMAWVADASLASAVSNAGGLGIIAGGNAPKEVVKKEIKKVKE LTEQPFGVNIMLLSPFADEIVDLVCEEQVPVVTTGAGNPAKYMARFKEHNIKVIPVVPSV ALAKRMEKIGADAVIFEGMEAGGHIGKLTTMSGLPQIVDAVSIPVIAAGGIGDGRGMAAA FMLGAEAVQLGTRFLIAKECNVHPDYKQKVLKARDLDAVITCQHFGHPVRTLKNKLTAQY NQLEKQELQKEVPDLEMFEKIGQGALRKAVVDGDMDYGSVMAGQIAGLIKKEETAQEIID SLMSECKAIVHKMNQRWG >gi|284795539|gb|ADDQ01000010.1| GENE 42 37851 - 38078 536 75 aa, chain - ## HITS:1 COG:no KEGG:EF2884 NR:ns ## KEGG: EF2884 # Name: acpP # Def: acyl carrier protein # Organism: E.faecalis # Pathway: not_defined # 1 75 1 75 75 83 100.0 2e-15 MVFEKIQAIIVEELGKDAEEVQLTTNIQEELDADSLDLFQIINEIEDEFDVKIETEDGIQ TVQDLVTYVEKQQAN >gi|284795539|gb|ADDQ01000010.1| GENE 43 38131 - 39096 1016 321 aa, chain - ## HITS:1 COG:SP0417 KEGG:ns NR:ns ## COG: SP0417 COG0332 # Protein_GI_number: 15900336 # Func_class: I Lipid transport and metabolism # Function: 3-oxoacyl-[acyl-carrier-protein] synthase III # Organism: Streptococcus pneumoniae TIGR4 # 4 321 3 324 324 364 57.0 1e-100 MKNYARISCTSRYVPENCVTNHQLSEMMDTSDEWIHSRTGISERRIVTQENTSDLCHQVA KQLLEKSGKQASEIDFILVATVTPDFNMPSVSCQVQGAIGATEAFAFDISAACSGFVYAL SMAEKLVLSGRYQTGLVIGGETFSKMLDWTDRSTAVLFGDGAAGVLIEAAETPHFLNEKL QADGQRWAALTSGYTINESPFYQGHEQASKTLQMEGRSIFDFAIKDVSQNILSLVTDETV DYLLLHQANVRIIDKIARKTKISREKFLTNMDKYGNTSAASIPILLDDAVENGTLILGSQ QRVVLTGFGGGLTWGSLLLTL >gi|284795539|gb|ADDQ01000010.1| GENE 44 39112 - 39552 542 146 aa, chain - ## HITS:1 COG:CAC3579 KEGG:ns NR:ns ## COG: CAC3579 COG1846 # Protein_GI_number: 15896813 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Clostridium acetobutylicum # 1 144 1 144 154 156 59.0 1e-38 MEPNLETVNDYLVSVFNDILTIEESELKKSQFNDLSITEMHTIEAIGMYKKKTSSEVAKE LSITVGTLTVAINNLVKKGYVERLRSEDDRRVVKLGLTKKGKLLFRVHQHFHREMVKNIL KGMEQEEEQALLRALKNLHDFLQEYK >gi|284795539|gb|ADDQ01000010.1| GENE 45 39650 - 39799 62 49 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293382485|ref|ZP_06628420.1| ## NR: gi|293382485|ref|ZP_06628420.1| hypothetical protein HMPREF9377_00373 [Enterococcus faecalis R712] # 1 49 1 49 49 67 100.0 4e-10 MKYSSNISKKAHFQGTRLLKKGSITLIPKPFSQKKERSATKKHHWHSPD >gi|284795539|gb|ADDQ01000010.1| GENE 46 39942 - 40172 314 76 aa, chain - ## HITS:1 COG:no KEGG:EF2888 NR:ns ## KEGG: EF2888 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 76 1 76 76 121 100.0 7e-27 MKHSQLVAIIKRLEAMIEAADNEVQVRRFEREGVEKCIVSFDKSTETFELTESDTHQSYQ FDNIDIVAMEIYDLIQ >gi|284795539|gb|ADDQ01000010.1| GENE 47 40273 - 41163 1220 296 aa, chain - ## HITS:1 COG:L81616 KEGG:ns NR:ns ## COG: L81616 COG2084 # Protein_GI_number: 15674197 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases # Organism: Lactococcus lactis # 1 292 1 292 293 369 63.0 1e-102 MSKIGFIGTGVMGKSIIRNMMKNNLSVNVYNRTKSKTDDLVAEGAVWYDTPKAIAEASDI IFTMVGFPSDVEGVYFNETGIFQADLTGKIVVDLTTSTPTLAEKIAKKAAEVGAHALDAP VSGGDLGAKNGTLTIMVGGDQESYDTVLPIFKTFGKTFMLHGSAGKGQHTKMANQLMIAG TMTGLTEMLVYANATGLTLEKVLETVGGGSAANWSLSNYGPRILKEDYTPGFFVKHFIKD LKIALDEAKKLDLPLPATQKATELYESLADKGFENDGTQALIKLWWTDGKQPTNKN >gi|284795539|gb|ADDQ01000010.1| GENE 48 41236 - 42459 1364 407 aa, chain - ## HITS:1 COG:L190226 KEGG:ns NR:ns ## COG: L190226 COG0438 # Protein_GI_number: 15674120 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Lactococcus lactis # 1 386 1 386 446 432 57.0 1e-121 MKIGFFTDTYFPQVSGVATSIKTLKDELEKHGHEVYIFTTTDPNATDFEEDVIRMPSVPF VSFKDRRVVVRGMWYAYLIAKELELDLIHTHTEFGAGILGKMVGKKMKIPVIHTYHTMYE DYLHYIAKGKVVRPSHVKFFSRVFTNHTTGVVCPSERVIEKLRDYGVTAPMRIIPTGIEI DKFLRPDITEEMIAGMRQQLGIEEQQIMLLSLSRISYEKNIQAIIQGLPQIIEKLPQTRL VIVGNGPYLEDLKELAEELEVSEYVQFTGEVPNEEVAIYYKAADYFVSASTSETQGLTYT EAMAAGVQCVAEGNAYLNNLFDHESLGKTFKTDSDFAPTLIDYIQANIKMDQTILDEKLF EISSTNFGNKMIEFYQDTLIYFDQLQMEKENADSIKKIKVKFTSLRK >gi|284795539|gb|ADDQ01000010.1| GENE 49 42506 - 43501 1173 331 aa, chain - ## HITS:1 COG:L189090 KEGG:ns NR:ns ## COG: L189090 COG0438 # Protein_GI_number: 15674119 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Lactococcus lactis # 1 330 4 330 332 368 55.0 1e-102 MLYFEGEKILAKSGIGRALDHQKRALSEVGIEYTLDADCSDYDILHINTYGINSHRMVRK ARKLGKKVIYHAHSTEEDFRNSFIGSNQLAPLVKKYLISLYSKADHLITPTPYSKTLLEG YGIKVPISAISNGIDLSRFYPSEEKEQKFREYFKIDEEKKVIICVGLFFERKGITDFIEV ARQLPEYQFIWFGDTPMYSIPKNIRQLVKEDHPENVIFPGYIKGDVIEGAYAAANLFFFP SREETEGIVVLEALASQQQVLVRDIPVYQGWLVANENCYMGHSIEEFKKYIEGLLEGKIP STREAGYQVAEQRSIKQIGYELKEVYETVLS Prediction of potential genes in microbial genomes Time: Sun May 15 12:21:32 2011 Seq name: gi|284795538|gb|ADDQ01000011.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont32.1, whole genome shotgun sequence Length of sequence - 82469 bp Number of predicted genes - 86, with homology - 81 Number of transcription units - 28, operones - 17 average op.length - 4.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 144 102 ## EF2023 hypothetical protein + TRNA 375 - 446 59.8 # Trp CCA 0 0 2 2 Op 1 . + CDS 812 - 1045 211 ## EF2021 hypothetical protein 3 2 Op 2 . + CDS 1048 - 2382 1241 ## COG0863 DNA modification methylase 4 2 Op 3 . + CDS 2420 - 2611 73 ## gi|256617868|ref|ZP_05474714.1| predicted protein + Prom 2669 - 2728 1.6 5 3 Tu 1 . + CDS 2748 - 2936 276 ## gi|256960129|ref|ZP_05564300.1| predicted protein + Prom 2938 - 2997 4.1 6 4 Op 1 . + CDS 3022 - 3696 513 ## gi|256960130|ref|ZP_05564301.1| predicted protein 7 4 Op 2 . + CDS 3743 - 4600 602 ## COG5484 Uncharacterized conserved protein 8 4 Op 3 . + CDS 4581 - 5870 665 ## PEPE_0782 phage terminase large subunit 9 4 Op 4 . + CDS 5870 - 7354 1393 ## BH3532 hypothetical protein 10 4 Op 5 . + CDS 7347 - 8273 642 ## COG5585 NAD+--asparagine ADP-ribosyltransferase + Prom 8288 - 8347 3.5 11 5 Op 1 . + CDS 8396 - 9031 613 ## gi|256960135|ref|ZP_05564306.1| predicted protein 12 5 Op 2 . + CDS 9045 - 9941 1234 ## gi|256960136|ref|ZP_05564307.1| main capsid protein Gp34 13 5 Op 3 . + CDS 10012 - 10344 316 ## gi|256960137|ref|ZP_05564308.1| predicted protein 14 5 Op 4 . + CDS 10341 - 10616 173 ## gi|256960138|ref|ZP_05564309.1| predicted protein 15 5 Op 5 . + CDS 10613 - 10951 465 ## LACR_1768 hypothetical protein 16 5 Op 6 . + CDS 10948 - 11340 556 ## LJ1429 Lj928 prophage protein 17 5 Op 7 . + CDS 11359 - 11964 607 ## LJ1428 Lj928 prophage protein 18 5 Op 8 . + CDS 11967 - 12275 539 ## gi|256960142|ref|ZP_05564313.1| predicted protein + Term 12294 - 12329 4.2 19 6 Op 1 . + CDS 12338 - 12736 541 ## gi|256960143|ref|ZP_05564314.1| predicted protein 20 6 Op 2 . + CDS 12805 - 13110 261 ## gi|256960144|ref|ZP_05564315.1| predicted protein 21 6 Op 3 . + CDS 13097 - 17551 4120 ## COG5283 Phage-related tail protein 22 6 Op 4 . + CDS 17548 - 18270 611 ## PEPE_0798 hypothetical protein 23 6 Op 5 . + CDS 18270 - 19715 1276 ## lp_0675 prophage Lp1 protein 52, endolysin 24 6 Op 6 . + CDS 19730 - 20461 838 ## lse_1597 hypothetical protein 25 6 Op 7 . + CDS 20479 - 20958 487 ## gi|256853514|ref|ZP_05558881.1| predicted protein 26 6 Op 8 . + CDS 20972 - 21367 578 ## EF1995 hypothetical protein 27 6 Op 9 . + CDS 21369 - 21491 243 ## gi|256960151|ref|ZP_05564322.1| predicted protein 28 6 Op 10 . + CDS 21502 - 21711 322 ## gi|256852623|ref|ZP_05557994.1| predicted protein + Term 21712 - 21744 4.0 29 6 Op 11 . + CDS 21764 - 22870 1396 ## COG5263 FOG: Glucan-binding domain (YG repeat) + Term 22883 - 22924 6.0 + Prom 23263 - 23322 8.1 30 7 Tu 1 . + CDS 23353 - 23766 474 ## COG3223 Predicted membrane protein + Term 23782 - 23834 5.4 31 8 Tu 1 . - CDS 23837 - 24652 658 ## COG1408 Predicted phosphohydrolases - Prom 24672 - 24731 6.3 + Prom 24555 - 24614 7.2 32 9 Op 1 1/0.000 + CDS 24824 - 25888 1558 ## COG0006 Xaa-Pro aminopeptidase 33 9 Op 2 . + CDS 25902 - 26222 422 ## COG1694 Predicted pyrophosphatase + Term 26234 - 26278 5.1 + Prom 26392 - 26451 4.2 34 10 Op 1 10/0.000 + CDS 26555 - 26986 677 ## COG1302 Uncharacterized protein conserved in bacteria 35 10 Op 2 4/0.000 + CDS 26979 - 27431 639 ## COG0781 Transcription termination factor + Prom 27438 - 27497 6.0 36 10 Op 3 7/0.000 + CDS 27535 - 28380 1164 ## COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase 37 10 Op 4 . + CDS 28390 - 29736 1533 ## COG1570 Exonuclease VII, large subunit 38 10 Op 5 . + CDS 29738 - 29968 477 ## EF0980 exodeoxyribonuclease VII, small subunit 39 10 Op 6 3/0.000 + CDS 29968 - 30849 1203 ## COG0142 Geranylgeranyl pyrophosphate synthase 40 10 Op 7 6/0.000 + CDS 30863 - 31678 864 ## COG1189 Predicted rRNA methylase + Prom 31709 - 31768 10.9 41 11 Op 1 8/0.000 + CDS 31817 - 32266 434 ## COG1438 Arginine repressor 42 11 Op 2 . + CDS 32284 - 33957 1983 ## COG0497 ATPase involved in DNA repair + Term 33975 - 34032 18.1 - Term 33970 - 34011 7.0 43 12 Op 1 . - CDS 34048 - 34158 178 ## 44 12 Op 2 . - CDS 34226 - 35182 876 ## COG0598 Mg2+ and Co2+ transporters - Prom 35214 - 35273 7.5 45 13 Tu 1 . + CDS 35457 - 35828 174 ## EF0987 putative lipoprotein + Term 35883 - 35909 1.0 + Prom 35904 - 35963 6.4 46 14 Op 1 29/0.000 + CDS 36066 - 36548 530 ## COG2001 Uncharacterized protein conserved in bacteria 47 14 Op 2 . + CDS 36563 - 37519 980 ## COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis 48 14 Op 3 . + CDS 37536 - 37943 546 ## EF0990 cell division protein 49 14 Op 4 4/0.000 + CDS 37943 - 40171 2385 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 50 14 Op 5 28/0.000 + CDS 40199 - 41164 1070 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 51 14 Op 6 4/0.000 + CDS 41187 - 42557 1352 ## COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase 52 14 Op 7 3/0.000 + CDS 42562 - 43653 1248 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase 53 14 Op 8 . + CDS 43662 - 44786 1025 ## COG1589 Cell division septal protein 54 14 Op 9 . + CDS 44858 - 44926 57 ## 55 14 Op 10 35/0.000 + CDS 44960 - 46282 1468 ## COG0849 Actin-like ATPase involved in cell division 56 14 Op 11 4/0.000 + CDS 46309 - 47541 1594 ## COG0206 Cell division GTPase 57 14 Op 12 14/0.000 + CDS 47558 - 48235 608 ## COG0325 Predicted enzyme with a TIM-barrel fold 58 14 Op 13 . + CDS 48249 - 48893 764 ## COG1799 Uncharacterized protein conserved in bacteria + Term 48988 - 49022 -0.7 + Prom 48901 - 48960 3.3 59 15 Op 1 . + CDS 49108 - 49179 146 ## 60 15 Op 2 . + CDS 49206 - 49988 1342 ## PROTEIN SUPPORTED gi|29375583|ref|NP_814737.1| S4 domain-containing protein 61 15 Op 3 . + CDS 49999 - 50088 84 ## 62 15 Op 4 6/0.000 + CDS 50140 - 50841 961 ## COG3599 Cell division initiation protein + Term 51034 - 51076 9.0 + Prom 51053 - 51112 4.8 63 15 Op 5 . + CDS 51152 - 53932 3301 ## COG0060 Isoleucyl-tRNA synthetase + Term 53937 - 53993 13.2 - Term 53922 - 53982 15.0 64 16 Op 1 . - CDS 53984 - 55507 1720 ## COG0364 Glucose-6-phosphate 1-dehydrogenase 65 16 Op 2 . - CDS 55507 - 56175 843 ## COG1321 Mn-dependent transcriptional regulator - Prom 56202 - 56261 5.2 - Term 56287 - 56346 10.2 66 17 Tu 1 . - CDS 56347 - 56715 290 ## EF1006 hypothetical protein - Prom 56757 - 56816 4.0 + Prom 56814 - 56873 8.1 67 18 Tu 1 . + CDS 56914 - 57645 726 ## COG1489 DNA-binding protein, stimulates sugar fermentation + Term 57684 - 57718 -0.7 + Prom 57660 - 57719 6.0 68 19 Op 1 1/0.000 + CDS 57751 - 58749 1372 ## COG0673 Predicted dehydrogenases and related proteins 69 19 Op 2 1/0.000 + CDS 58776 - 60077 1307 ## COG0513 Superfamily II DNA and RNA helicases 70 19 Op 3 1/0.000 + CDS 60122 - 62827 2705 ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain + Term 62840 - 62889 5.4 + Prom 62880 - 62939 6.2 71 20 Op 1 8/0.000 + CDS 63056 - 63382 458 ## COG1440 Phosphotransferase system cellobiose-specific component IIB 72 20 Op 2 13/0.000 + CDS 63405 - 63725 460 ## COG1447 Phosphotransferase system cellobiose-specific component IIA 73 20 Op 3 8/0.000 + CDS 63791 - 65038 1534 ## COG1455 Phosphotransferase system cellobiose-specific component IIC + Term 65045 - 65100 10.5 74 21 Op 1 . + CDS 65121 - 66515 1828 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 75 21 Op 2 . + CDS 66573 - 67766 1184 ## COG4552 Predicted acetyltransferase involved in intracellular survival and related acetyltransferases + Prom 67768 - 67827 6.2 76 21 Op 3 . + CDS 67849 - 67968 189 ## + Term 67995 - 68052 17.0 + TRNA 68087 - 68160 75.1 # Arg CCT 0 0 + Prom 68085 - 68144 76.3 77 22 Tu 1 . + CDS 68194 - 68526 560 ## PROTEIN SUPPORTED gi|29375603|ref|NP_814757.1| hypothetical protein EF1023 + Term 68557 - 68611 17.1 - Term 68543 - 68597 18.5 78 23 Tu 1 . - CDS 68640 - 71285 2591 ## COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase - Prom 71321 - 71380 6.4 + Prom 71356 - 71415 10.8 79 24 Op 1 4/0.000 + CDS 71455 - 72084 731 ## COG0517 FOG: CBS domain 80 24 Op 2 . + CDS 72097 - 72909 1011 ## COG1806 Uncharacterized protein conserved in bacteria + Term 72913 - 72965 11.0 - Term 72894 - 72959 24.3 81 25 Op 1 . - CDS 72980 - 75511 2413 ## COG2898 Uncharacterized conserved protein 82 25 Op 2 . - CDS 75508 - 76242 517 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - Prom 76279 - 76338 8.0 + Prom 76264 - 76323 5.9 83 26 Op 1 . + CDS 76419 - 77003 532 ## EF1029 hypothetical protein 84 26 Op 2 . + CDS 77026 - 78081 1033 ## EF1030 endonuclease/exonuclease/phosphatase family protein + Term 78087 - 78133 10.3 - Term 78075 - 78121 10.3 85 27 Tu 1 . - CDS 78130 - 80367 1476 ## COG0178 Excinuclease ATPase subunit - Prom 80387 - 80446 7.2 + Prom 80338 - 80397 6.5 86 28 Tu 1 . + CDS 80529 - 82467 2116 ## COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Predicted protein(s) >gi|284795538|gb|ADDQ01000011.1| GENE 1 1 - 144 102 47 aa, chain + ## HITS:1 COG:no KEGG:EF2023 NR:ns ## KEGG: EF2023 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 47 3 49 96 88 93.0 6e-17 VFWRKVGGFYQYLGVIMVVSKDKETRVRHALPILAPFRLFFEATYKK >gi|284795538|gb|ADDQ01000011.1| GENE 2 812 - 1045 211 77 aa, chain + ## HITS:1 COG:no KEGG:EF2021 NR:ns ## KEGG: EF2021 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 23 77 1 55 55 94 81.0 9e-19 MKSYWYVSLTHKYPQSNRSTVSMRVVMSVQIKKNASIVEMTREATPKEIDDCKLVYCGHG YFDEKNIQENIKRSMRD >gi|284795538|gb|ADDQ01000011.1| GENE 3 1048 - 2382 1241 444 aa, chain + ## HITS:1 COG:lin1262_2 KEGG:ns NR:ns ## COG: lin1262_2 COG0863 # Protein_GI_number: 16800331 # Func_class: L Replication, recombination and repair # Function: DNA modification methylase # Organism: Listeria innocua # 229 443 1 215 216 316 71.0 5e-86 MKFEKMKLSELHPAEYNPRVELKSGMEEYEKLKQSILEFGFVDPPIFNKRTGNLVGGHQR VSVAKDLGIGEIEVSIVDLPIEKEKALNIALNKISGQWDEDKLVELLEELNTDELPLTGF NQEELDELLADMNKFETTADRVKANPANTSLFDSFLFPPFSYLDTKTKRWLDRKRQWKEL GIKSELGREDNLVFNPSMQAPGLEGTSIFDPVLCELGYRWFTPKTESNIFDPFAGGSVRG IVAKVLGHNYTGIDLRAEQISANYANAREIGLSDINWICDDSLNIDHHIEDESQDLLFTC PPYADLEVYSDDERDISNMSYEEFAEVYSEILKRSAKKLKDNRFAVVTISDVRDKKGFYQ DLTGLTKRAFSTEGLYFYNDMILLNAVGSGSLRARRLMNNRKVTRMHQNVLVFYKGNPKN INQHFEVLETLDDELENLVNGLDE >gi|284795538|gb|ADDQ01000011.1| GENE 4 2420 - 2611 73 63 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256617868|ref|ZP_05474714.1| ## NR: gi|256617868|ref|ZP_05474714.1| predicted protein [Enterococcus faecalis ATCC 4200] # 1 63 1 63 63 85 100.0 1e-15 MTNKELKSIAENARSLYRSNLITREEAKERIEPFIEAYNKKSIEIAKKFNQKPKTISFVS FLR >gi|284795538|gb|ADDQ01000011.1| GENE 5 2748 - 2936 276 62 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256960129|ref|ZP_05564300.1| ## NR: gi|256960129|ref|ZP_05564300.1| predicted protein [Enterococcus faecalis Merz96] # 1 62 22 83 83 99 100.0 5e-20 METFDYEVQQALEKQKVAEENNKIIRAAKAQWISNFKEGKVRLDTVKDLKDLIEIESHLK DV >gi|284795538|gb|ADDQ01000011.1| GENE 6 3022 - 3696 513 224 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256960130|ref|ZP_05564301.1| ## NR: gi|256960130|ref|ZP_05564301.1| predicted protein [Enterococcus faecalis Merz96] # 1 224 23 246 246 375 100.0 1e-102 MSIFYNNLGEFQWVSVTALISILGIFVTLGSTVYTNKKTIRANVQSKTSIEWINKIRELS AELINNYESLGHASQKLYTCILSISALSDSYNNEKKQIQEVGFGGNMSVINRMNSLHKEK KESSLEYNKFSSITLSLYNQLSLYFVDDLTNNEILEQLEKLKEFNRRLADVFKEDIEVNQ TEFSYQKAVDNYLKIVDELSYEIENFRKLIAKYIKDEWNAIQKK >gi|284795538|gb|ADDQ01000011.1| GENE 7 3743 - 4600 602 285 aa, chain + ## HITS:1 COG:lin1733 KEGG:ns NR:ns ## COG: lin1733 COG5484 # Protein_GI_number: 16800801 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 237 1 252 294 159 43.0 4e-39 MARKRDPRRDQAKEIWLRSNGKKILKDLANELNVSDSQIRKWKSIDKWSAELKGNVTNAK GNVTNRGGAPFGNQNAVGNKGNSRASPPLGNKNAIKTGEYETIFADMLSDEEKDIYSNLN DDPFFILNDEIRLLKVRQFRMMKRIKEAEKGLNDEEVERLQQLRKIKTPVEKDGRKLEIK REVMQDVQVTRKTFRKLDDILAIEDALTRVSNQLTKSIKQLNELSLSQDKKVMLNRQNEK LAAEIRRLKIQNGDDIPEVEDDGFIAAINNIVNDNEVWNDDNIET >gi|284795538|gb|ADDQ01000011.1| GENE 8 4581 - 5870 665 429 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0782 NR:ns ## KEGG: PEPE_0782 # Name: not_defined # Def: phage terminase large subunit # Organism: P.pentosaceus # Pathway: not_defined # 5 421 2 419 423 588 67.0 1e-166 MTISKRKTSVVFKFTSFSKKQKQVLSWWKHPKYKDKEAIICDGSVRAGKTVIMSLSYIFW AMESYDEDQFGMAGKTIGSLRRNVIRPLKKMLRGRGYTVKDNRTDNILEITKNNKTNYFF LFGGKDEASQDLVQGLTAAGFFFDEVALMPQSFVNQATARLSVDGAKSWFNCNPAGPHHW FKLEWLDKLTEKHAIRIHFTMEDNPSLSERVINRYKRMYSGVFYDRYIRGLWVLSEGIIF DNFDAETMVKEPPKNAIASQYYVSIDYGTQNATVFLLWAKYEENWYCIDEYYYSGRDESK QKSDDKYLKDLNSFVEGKKVKIIVDPSAASFIALLRENGYKVIKAKNNVIDGIRATQTAM NEGKIYFSSNCKNLFAEFASYIWDEKAADRGEDKPIKQHDHACDALRYFVYTILNKSRGI KLQSVKGVI >gi|284795538|gb|ADDQ01000011.1| GENE 9 5870 - 7354 1393 494 aa, chain + ## HITS:1 COG:no KEGG:BH3532 NR:ns ## KEGG: BH3532 # Name: not_defined # Def: hypothetical protein # Organism: B.halodurans # Pathway: not_defined # 25 474 3 428 451 341 44.0 5e-92 MTEEVSRPNTESKIREFVDLLGNRVFYCDKNAKIDERLVDKYINKHRKLIGFYEELEKLY NGQHDIYYQKNKGIGKPDHRIAVNFARYVVDSSAAFFNGKPTKITHPDGEVKEFVQNFRK RNEEEDNDAELSKLTAIYGHAYKLLYQNEEAETCVTYLKPTQGFIVYADDLLKAPMFAVL YNKMAKDELTATVYPQNSTETFIFTQDKTSKRLETKRGPTVFQKALSYLLGGKEAIANPY GEVPMIEFMENDERQGRIESVWSLINNYNEALSEKANDVSYFADAYLKMIGVDLADENVA AYLRDNRVINSATPLSEGETVDIDFLDKPSSDTTQENLLDRLERLIYQMSMTYNANDESF SNNASGISLEFKMQNPRNLAQAKARKFKKAYAQMYKMIFSLPTNVPANKAKEWFNLEYTF DFNIPRNIKDEAETAQKLEGIVSRETQLGVLSIVSDVTQEMERIKDEETEERLNPQVDFG KFTQATEEVTEEHE >gi|284795538|gb|ADDQ01000011.1| GENE 10 7347 - 8273 642 308 aa, chain + ## HITS:1 COG:SPy0975 KEGG:ns NR:ns ## COG: SPy0975 COG5585 # Protein_GI_number: 15674985 # Func_class: T Signal transduction mechanisms # Function: NAD+--asparagine ADP-ribosyltransferase # Organism: Streptococcus pyogenes M1 GAS # 2 298 6 307 541 155 31.0 1e-37 MSNYWAEREAKHIEEMLKRHVNYEQEIHRRYLQLWKTIEAEIQQFYVAYAGKEKISIDGA KRRASKHDVQIFAEKAKRYVQTRDFSKEANEQLRLYNLTMKVNRLELLKSKIGLYLTDNT NQLQTYFTAMLTEEAVAEFVRQAGILGGSILSKETYRMFAKAIIDGSFHNATFSQRLWVN QDVLKASIDRLLTVGLSAGKHPDILARELRKLVVIDSLRGKETADYVARRLMISESARIQ SEVQKQSYEKYGYEEYNLIVESNACPICVGIASANPHKVSEMSPGINASPIHNWCRCSTA PAYKDKKF >gi|284795538|gb|ADDQ01000011.1| GENE 11 8396 - 9031 613 211 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256960135|ref|ZP_05564306.1| ## NR: gi|256960135|ref|ZP_05564306.1| predicted protein [Enterococcus faecalis Merz96] # 1 211 7 217 217 261 100.0 2e-68 MNEEKHLLLPMDLQFFADEPNSDEPNSDNSNESGDSSTKDSQNPKNENPDGKETGKTFTR DDVAKMVAAETKKAVAQAKSDWEKQKSYEQMTAEERVKAKEQEAADKEALAEKREKEAQA RLDRLTRAESVRNDLSENGLSDYVSAAQADLLLVKDTDEDTKKAVDELKQIISKARDGIQ KELLKGQTVNVATATKETDWRSNLTKNLEKK >gi|284795538|gb|ADDQ01000011.1| GENE 12 9045 - 9941 1234 298 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256960136|ref|ZP_05564307.1| ## NR: gi|256960136|ref|ZP_05564307.1| main capsid protein Gp34 [Enterococcus faecalis Merz96] # 1 298 1 298 298 510 100.0 1e-143 MPVILDSKDLKAIDKEFAAGSQVWDLLKGGAAAVTEADFVGAKEVRINKMKGFTASDYKR NEDNKRSKIDVAKETVKLEKERWFGYDLDTLDQSENASYEVQAIVEEHTRLVAIPEKDRV AVQRLLEAAFAEAADDDSEGKYVGKTVKETITTENALASYDAAEAYMTDAEIVGPFIMFV STDYYSALKNAKGVSKTFTTNEQQISGINRKVAQLDGSDTIIQKVAKSRLQVDSTKKINY ILVPLMVCSPVEKYNSIDLIPASQDRDGYRDTIKGLNYYDAIVTEKARPAIYVSYDSK >gi|284795538|gb|ADDQ01000011.1| GENE 13 10012 - 10344 316 110 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256960137|ref|ZP_05564308.1| ## NR: gi|256960137|ref|ZP_05564308.1| predicted protein [Enterococcus faecalis Merz96] # 1 110 1 110 110 183 100.0 4e-45 MTLSDYRVLLDISEDTYEKDKAKIIKIWDITEKQLLVKLKTDEIPEKLDYIVPSIVVKRY NRLGFEGMEQHSQSEETISYNLDDFGEFQDEINDYLEEQGLIRKRKVSFL >gi|284795538|gb|ADDQ01000011.1| GENE 14 10341 - 10616 173 91 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256960138|ref|ZP_05564309.1| ## NR: gi|256960138|ref|ZP_05564309.1| predicted protein [Enterococcus faecalis Merz96] # 1 91 1 91 91 157 100.0 2e-37 MRTCINYYNKKHELILEKLIGSVTEVGTEKQMTIFPNIKEQMVIFRFRDRLSIRSGFLEY YDEEEQKNRKFTVVKNLRVSKGTSVYGSEYR >gi|284795538|gb|ADDQ01000011.1| GENE 15 10613 - 10951 465 112 aa, chain + ## HITS:1 COG:no KEGG:LACR_1768 NR:ns ## KEGG: LACR_1768 # Name: not_defined # Def: hypothetical protein # Organism: L.lactis_SK11 # Pathway: not_defined # 1 112 1 112 112 78 35.0 9e-14 MTYRVDISGLDDLIEAIEEAKKLDDVKEVVKNDTAYMANQIAEETPVRSGYLKRSETPSI KDDGMTGEVEAMADYSAYVEYGTRYMYGRFYMKKGHTAAAKRFLDNMEALVK >gi|284795538|gb|ADDQ01000011.1| GENE 16 10948 - 11340 556 130 aa, chain + ## HITS:1 COG:no KEGG:LJ1429 NR:ns ## KEGG: LJ1429 # Name: not_defined # Def: Lj928 prophage protein # Organism: L.johnsonii # Pathway: not_defined # 5 127 2 124 125 69 26.0 4e-11 MTFKDPYSELYEALFVTLEQTGYETYGHLPDDDASYPFVFLGEQWSKDRQTKTRTLGSTN IMIHVYDHDDKRRELNQVLADVRKIVHELHQTKNFNWLVTESSTEVIYENTTNFGTSLAH GVLDITLEFE >gi|284795538|gb|ADDQ01000011.1| GENE 17 11359 - 11964 607 201 aa, chain + ## HITS:1 COG:no KEGG:LJ1428 NR:ns ## KEGG: LJ1428 # Name: not_defined # Def: Lj928 prophage protein # Organism: L.johnsonii # Pathway: not_defined # 1 174 1 175 189 113 40.0 5e-24 MEKAIQGKKIKLMFRLTRERATTAAKLLALEISHEYKSETKTDTQSTKDGNVPTSGMPSA SIEMEFLRTGTETYNMLKYAYRNGLEIDVWRINFDKKDPKTGKYEAEFGTGLLDSFGDSA ESDSNSSIKPTLVLNGDLVEGWATVDAENEELARAFFYDTVAGAEPEEPVEKYTPKTIEV PKVESVTPTSDGAVVKVKEEE >gi|284795538|gb|ADDQ01000011.1| GENE 18 11967 - 12275 539 102 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256960142|ref|ZP_05564313.1| ## NR: gi|256960142|ref|ZP_05564313.1| predicted protein [Enterococcus faecalis Merz96] # 1 102 1 102 102 181 100.0 1e-44 MANTYRIYKGSEKVVEGASPLTITGLDAGAKVAAGTYHIVRVQDEKESEKVAIPAFTVLA GRSLENKPTEANTIPEIKEWLTAHSIDFTGKTTKTDLLALVP >gi|284795538|gb|ADDQ01000011.1| GENE 19 12338 - 12736 541 132 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256960143|ref|ZP_05564314.1| ## NR: gi|256960143|ref|ZP_05564314.1| predicted protein [Enterococcus faecalis Merz96] # 1 132 1 132 132 235 100.0 8e-61 MSTNVKPVATINGKKYPLIFGFKFLNEINALKPDVEEVDGFVQLIGGLQDGDAFAFQKLM HAALITYDDLTTKEIDDYLETSEEALTLFENFISFLEQAPLTALRTKKALEAIKKIMAYM EQIQANQQETTA >gi|284795538|gb|ADDQ01000011.1| GENE 20 12805 - 13110 261 101 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256960144|ref|ZP_05564315.1| ## NR: gi|256960144|ref|ZP_05564315.1| predicted protein [Enterococcus faecalis Merz96] # 1 101 1 101 101 134 100.0 2e-30 MTPYEFYLRIKAVNLRAINEERKLYVNALATRIFTTPDEKGQRYIFNEVKDVYDFEKLER DVRGEISQREAEKLSELEENARRLEQARKIVEERRKKRDTK >gi|284795538|gb|ADDQ01000011.1| GENE 21 13097 - 17551 4120 1484 aa, chain + ## HITS:1 COG:XF0730 KEGG:ns NR:ns ## COG: XF0730 COG5283 # Protein_GI_number: 15837332 # Func_class: S Function unknown # Function: Phage-related tail protein # Organism: Xylella fastidiosa 9a5c # 70 268 102 316 739 73 27.0 3e-12 MTQSKTVTAILTARDNNFTSAMNGAVSSLKKLSSNASDIPSNLNTVNGAMKSFGDKTASI GQSIEKVGDSMTKGITLPIAGAVGAVTTAAVKWESAFTGVKKTNDEMIDSNGKVIYSYDD LEKGLRDLAKELPASHTEIANVAEAAGQLGIQTDKVVGFTKTMIDMGESTNMSADSAATS LARFANITGMSQDKFSNLGSAIVDLGNNLATTESEITEMGLRLAGAGKQIGMTEGDIVGF AAALSSVGIEAEAGGSAFSRLMVQMQLATETGVEAFAPLKQAVAEQGVSWESFVHAVNWG GKELTAVSKQMGIPTSELKKMYKEASKASGSLEDFANVTGRTGEEFAQLFKSNPSQALIE FIQGLKDSEKHGISAIKVLDDMGITEVRLRDSLLRAANASDVFEGAVKRGNSAFKENTAL ANEAGKRYETTEAKLGMLKNEFVNMGIDLGGPFVDALRSALQASKPLVETLGKMAKAFSE ANPKTQEYIMKMIALAASVGPVLKVFGKMTSIFGKTISTMFETAGNIDSKWKKFINNPII RGSNSALQAVKGFVSKYKANLVGLENAGVNVNVLTRFTTLGETISGLFPTLDTFRANLRA SQRQLNMLGEGNKVTNFFRSFSASLQLSNSKLAKFASVVINPVGSLRNLSSAAGKSGTVL SGLGVAASKAGGGFRTFAVTGIRSIASLTGAMLSNPITAILVAITATIVGVVQAWKSNFM NIQGYVKTAFSGIVKSFKSVLPSSSSVTKTIKGLGNTFKWLGTGAIVGVTFAIAGFVDGL RAIVTVGKTVVNAIMAISNGVKGLWKRLKGDSKGADKAFKDMKKSLSDIEKDWDTMFSDS ALKKAAKSTEELGEKSKDTTKAISLNMEEASSSVENYSSKLDEAKQAMTELFSQQNGSTA GVETYFKNTLDLVTNLKEQQKKAVETYNKQIEAAEGKSEAEKQKIFANASSQYMKAVQTN NSDLLKVYTDYSNQLKNNKTVEGQELTEQQRATLQNQTNIIRDQLLQQNQQFVEAGMNKL ANKQALSEQEKEQTLTSLRTLGEIQAQQVQENNAQIQQLEIQKNQAKTESEKAAFQNQIT QLQTQNAQIRQSELEQGAQLLAIISQNGANKIAVTADNLAQLKGVTDQQLLGIYQSYVNN GASIDQQMALLAGMLRQRGIDGSNGLVQGLQSNDPTKWANMSRADIVNTLQALPPDLFRN GQDGKNQLIDGLNSGKTQLNNVGKELMSSMNSGQSSQKSNSKKAAADNSSAAASGTRSKS NEHKNAGKSNAQQTNAGTNSEKGNAKNSGSQLGAATIQGYLTQLPPANNAGRSLGNAVSQ GAGSVDMSPVGSNMARGVASGIRASQGEAVAAMQNLVAAVNAEAQKKAKIKSPSRLLKYD VGVFLAQGVAAGIREDTSVAVQSAKDMISSIHQSITGSRLMKRSNAIEVKHSIDNTPMGK MVEILEEIRHLTVVMDTGQVVGALGSPMNLNLAEQQKQDGRYRS >gi|284795538|gb|ADDQ01000011.1| GENE 22 17548 - 18270 611 240 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0798 NR:ns ## KEGG: PEPE_0798 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 11 240 27 254 254 127 34.0 3e-28 MIEIVEYMAKGRFNSKEHGFYIIEHDAPSAEEVEIIEQIPFMQGQYDFSMLTGERIFSNR IVTVTFWRPNTPYEERKALEAKVKEELMMDGIDYIDDSWLRSGLRWYGKCKSVKAEDDSS SNSLTLTVEFDVYPFALRENISYSDVFDDDYFTDDSADNWTGYYIHGKREIFLINMGANA SSPTIKATSTMQLTTDDGITIKVPKGESQDYFFKLKRGTNHLTIYGEGHISFFMSSEVMV >gi|284795538|gb|ADDQ01000011.1| GENE 23 18270 - 19715 1276 481 aa, chain + ## HITS:1 COG:no KEGG:lp_0675 NR:ns ## KEGG: lp_0675 # Name: not_defined # Def: prophage Lp1 protein 52, endolysin # Organism: L.plantarum # Pathway: not_defined # 1 395 1 387 624 215 36.0 3e-54 MYRVLLFDNPNRKNPKIVHEPYSYGEKIKDSEVYLSLNGLGISTFEFTFNINNKYYQKIE PIIHFIQIVDVTRNKEIFYGRVAKITNKMEASGSFSQTLLAEDEKAFLYDSVQTYMKPTR MTVSAYLQKILDAHNKQVEAHKQFRLGEVNVVDNGDLLRGLGYQSTADTIKEKLLDRLGG TLTLRRVGNINYLDYLSNYGVNSETPLQLTKNLKSATRDIDISELFTRIVPVGQDIEDTS NTDIEVGTDFSRPKYTIEKVNGGKNYLDDEALIKKFGLNTGIVEFSNVKDPSILKRRGLQ WLKDQSLMLVTWTVEAIELGLLDKRYELITLGNSYKVDNQFIYAVERLQVIEKKFSILEP QKVTLTIGSKKKKLTDYQNEIKAIQSNLVNVKKFATAGVQNISELIKRQEEFDNDLSVQS SKVSSLEDLTSELSTTVTESTEAFKQLASDLTNTVESVGTAQTEMKKALDDLIKRVEKLE K >gi|284795538|gb|ADDQ01000011.1| GENE 24 19730 - 20461 838 243 aa, chain + ## HITS:1 COG:no KEGG:lse_1597 NR:ns ## KEGG: lse_1597 # Name: not_defined # Def: hypothetical protein # Organism: L.seeligeri # Pathway: not_defined # 5 142 4 118 205 62 35.0 1e-08 MAQEFKDTRPTNEPNTTVDYQDPTDVDEVQDEIKNGVIDPISQTFALWIRTKMYRRHVRE SLARMMEYTSVLFNKIKAISENTEKRQSKVEQRQTNLEERFKDVIANATTDSEVIDARSS ERLGNFKTLDERLEYFENIIASVIPVGFDVTIVHNLGAQPVVNVRTWTHGIGVLPLGTEP TGLFGGSASQSIQCTVKHVNSSECIVTIPLDYKTDSLPVKIDEHKYLLIDGQNSRSIVFD LIL >gi|284795538|gb|ADDQ01000011.1| GENE 25 20479 - 20958 487 159 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256853514|ref|ZP_05558881.1| ## NR: gi|256853514|ref|ZP_05558881.1| predicted protein [Enterococcus faecalis T8] # 1 159 3 161 161 310 100.0 1e-83 MDLTRIYRGMENGAESIEENFNKIGAAVDSTSRTFQKITKKEPLWTGAWYGGAAGNGNVP SKSLSECENGWIFQWQEYKKDGTLNGACYHFFLVPKQHAQNPGSGGVIFLLHGYNANSLV RKYLYVKDTKITGNDINASSSDTAGSGSKMFALSAIYEY >gi|284795538|gb|ADDQ01000011.1| GENE 26 20972 - 21367 578 131 aa, chain + ## HITS:1 COG:no KEGG:EF1995 NR:ns ## KEGG: EF1995 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 99 1 106 106 103 66.0 3e-21 MKIWIDDIQGYLDGYSTMEQPNKIELEVEKEPTDFYNYRWNGTSLIYDPNNVPEPEPAPP TDIEVLQAENAELKQLNSKLMINDMNLKKELSEVTKKADNFAQISAKSMLAINQLTNQVK EINEKLAEGVE >gi|284795538|gb|ADDQ01000011.1| GENE 27 21369 - 21491 243 40 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256960151|ref|ZP_05564322.1| ## NR: gi|256960151|ref|ZP_05564322.1| predicted protein [Enterococcus faecalis Merz96] # 1 40 1 40 40 70 100.0 3e-11 MFTFDDIKMMYDWGCFTDEQVMEFVPLCITEKEAKEIVGK >gi|284795538|gb|ADDQ01000011.1| GENE 28 21502 - 21711 322 69 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256852623|ref|ZP_05557994.1| ## NR: gi|256852623|ref|ZP_05557994.1| predicted protein [Enterococcus faecalis T8] # 1 69 1 69 69 122 100.0 1e-26 MIEEFVRGLLTNPEQVTFTTLFVGLFIWVMKQNSDRERNYQETIGKLADSLKDVEDIKTT VEKIHEKLN >gi|284795538|gb|ADDQ01000011.1| GENE 29 21764 - 22870 1396 368 aa, chain + ## HITS:1 COG:SP1937 KEGG:ns NR:ns ## COG: SP1937 COG5263 # Protein_GI_number: 15901761 # Func_class: R General function prediction only # Function: FOG: Glucan-binding domain (YG repeat) # Organism: Streptococcus pneumoniae TIGR4 # 51 197 26 172 318 85 35.0 2e-16 MKKTVKLLVAVGMGLSFMLPIGANAYQIEQDPINFGGYFPGYATNELIVLHESGNGNNVG PNSLDNETAYMKRNWQNAYVSYFVGSGGRVKQLAPAGQIQWGAGQTANAKAYAQIELART NNKETFKKDYAAYVNLIRDLATQIGATFDLDDGTGYGIVSHDWVSKNWWGDHTDPYGYLA SWGISKAQLAQDLQTGLPEDGHDVIVNPGKPNKPKYKVGQNVRFTTIYKNPDAPIEQHIN ANTLWTQVGTITQKLDGRKNLYRIENSGKLLGYANDGDIAELWENSKPKPAKVFTIGVNE GIVLRTGSPSLYAPVYGIWPKGAQFRYDSVHVADGYVWLGGTDSNGTRIYIPVGPNDGDP NNTWGTGY >gi|284795538|gb|ADDQ01000011.1| GENE 30 23353 - 23766 474 137 aa, chain + ## HITS:1 COG:YPO3717 KEGG:ns NR:ns ## COG: YPO3717 COG3223 # Protein_GI_number: 16123855 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Yersinia pestis # 2 111 17 126 135 65 35.0 3e-11 MILDIVLGILGVFLLVFMASYLVDLATYLMKPMTPDNFSVIMQEIISFFMLFEFIMMILR YIQEGHHIPIRYLILICLTAILRQLMVAHGDGLQTLLLSLSILLLVVVLFILGLNGSKFY TLGKAKVEEDHEQDFHH >gi|284795538|gb|ADDQ01000011.1| GENE 31 23837 - 24652 658 271 aa, chain - ## HITS:1 COG:L42411 KEGG:ns NR:ns ## COG: L42411 COG1408 # Protein_GI_number: 15673582 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Lactococcus lactis # 5 267 10 276 278 187 38.0 3e-47 MNVYLFLALFFIIIGILSYSFFIEPNCLVIHKNQIKVTESGKTLRIVQLSDIHLKKNYSV KALKQIVEKTNTLQPDIVVFTGDLFDDYARFGIEIQDEVSQLFRKINAPYGKFAIYGNHE YSGLDTNFYETILEAADFTVLKNTGKLLPVSHRISLYVAGLEDSLYGQTDLAAALVNRPT GTPTLLLTHEPDVADSAVNKNIDLILAGHSHGGQIRLPFFTYKNQLAKKYTHGLYHLEDE TPLIVHPGIGTTKISARFGVLPTIELIELTI >gi|284795538|gb|ADDQ01000011.1| GENE 32 24824 - 25888 1558 354 aa, chain + ## HITS:1 COG:lin1391 KEGG:ns NR:ns ## COG: lin1391 COG0006 # Protein_GI_number: 16800459 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Listeria innocua # 2 354 1 353 353 429 59.0 1e-120 MMARVEKLRELMKENNLQGFLVTSPYNLRYLTNFTGTTGLAMITLDKAFFVTDFRYTEQA AEQATGFTIVKNTGHIFDEVADLAERLQLDNLAFEETQVSFADYSLLEEILPCELVPVMG LIEELREVKDEEEVAIIEKACAIADQGFAFVLEMIKPGMTEIEVANQLDFFMRSKGASGV SFETIVASGLRSAMPHGVASHKVIEKGDLITLDFGCYYEGYVSDMTRTFAIGSIQPKLKE IYDIVLEAQLKVLAEAKPGLTGIQLDAIARDHIASYGYGDAFGHSTGHGIGLEIHEGPNV SFRADKQFVPGNVITDEPGIYLPGIGGVRIEDDLLITAEGNRVLTHAPKELIIL >gi|284795538|gb|ADDQ01000011.1| GENE 33 25902 - 26222 422 106 aa, chain + ## HITS:1 COG:BS_yvdC KEGG:ns NR:ns ## COG: BS_yvdC COG1694 # Protein_GI_number: 16080518 # Func_class: R General function prediction only # Function: Predicted pyrophosphatase # Organism: Bacillus subtilis # 1 103 1 103 106 99 48.0 1e-21 MDIQEYQRFISAFYKKRNWYQYDPFIRSNFLTEEVGEVCRAIRTIEIGRDRPDETVLADE ENLENLTEELGDVLDNLFILADKYDISLEMIMQKHRTKLMERYPEE >gi|284795538|gb|ADDQ01000011.1| GENE 34 26555 - 26986 677 143 aa, chain + ## HITS:1 COG:SP0434 KEGG:ns NR:ns ## COG: SP0434 COG1302 # Protein_GI_number: 15900352 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 13 136 5 125 129 114 50.0 8e-26 MSEEKNLVINANDSLGEIVIAPEVIEVIIGIAASKVEGVYGMRGTFANNVNELLGRAAHG KGVYLRTEEEGLKVDIYCYLNYGVSVPKVALEMQDRVKQQVLFMTDIDLVEVNIHVVAVV PEKIPQPDLNELFPEDEDGEENE >gi|284795538|gb|ADDQ01000011.1| GENE 35 26979 - 27431 639 150 aa, chain + ## HITS:1 COG:SPy1818 KEGG:ns NR:ns ## COG: SPy1818 COG0781 # Protein_GI_number: 15675648 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Streptococcus pyogenes M1 GAS # 7 140 8 138 150 105 44.0 2e-23 MSKTELTRHEIREKALQALFPLDFNADLTKQDAIDYALAYDNREIVSEDGEDLVPTYLDL LVGGVCSRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVPNIVALNEAV ELSKKYSDDRSRKFVNGVLSNVMKEIDSEA >gi|284795538|gb|ADDQ01000011.1| GENE 36 27535 - 28380 1164 281 aa, chain + ## HITS:1 COG:SP0825 KEGG:ns NR:ns ## COG: SP0825 COG0190 # Protein_GI_number: 15900713 # Func_class: H Coenzyme transport and metabolism # Function: 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase # Organism: Streptococcus pneumoniae TIGR4 # 1 277 1 278 285 363 66.0 1e-100 MSTVINGRELADQMQAEIQKDVEKMTQQGIQPGLVVLLVGENPASQTYVRNKERAAAKIG ILSKVEKLPETISEEELLAEIDKYNQDSRFHGILVQLPLPKHIDEEKILLAIDPKKDVDG FHPMNLGRLFVGKPEMIPCTPYGIMKMFEAYDIDLTGKRAVVIGRSNIVGKPMAQLLLMK NATVTIAHSKTEHLAEVAKEADILVVAIGRGHFVTKEFVKPGAVVIDVGMNRNQEGKLIG DVAFDEVSEIASYITPVPKGVGPMTITMLMYQTVEAAKKQK >gi|284795538|gb|ADDQ01000011.1| GENE 37 28390 - 29736 1533 448 aa, chain + ## HITS:1 COG:L0254 KEGG:ns NR:ns ## COG: L0254 COG1570 # Protein_GI_number: 15672836 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII, large subunit # Organism: Lactococcus lactis # 4 439 3 417 417 380 50.0 1e-105 MTQQYLTVTALTKYLKRKFDADPYLGRVYLTGEISNFRFRANAHQYFSLKDDHAKISAIM FKSAFQKLKFQPKEGMKVMVVGRISLYENSGSYQIYIEHMEPDGVGALYQALAELREKLG KEGLFEGPKQQLPRYPKRIAVVTSPSGAVIRDIITTVKRRYPIAQLVLFPTLVQGEQAAD DIVRNIQRADAQGDFDTMIIGRGGGSIEDLWPFNEEKVSRAIHAATTPIISSVGHETDVT IADMVADVRAATPTAAAELAVPVLNEELLRISERRSRLEQSFLYLLQQRTERFQRLQNSY VFKQPERLYEGQTIKLDRMTQRLFQAMTTIHHQKQRQAQGIIAQLQQQTPKGQLRESQQQ LAFLQRNLQTQMTQLFLNKQKQFTSAVQQLDLLSPLKIMGRGYSYTTKEDRVVKTVTELQ PADQLTIHYADGTVQANVETITAKKEEF >gi|284795538|gb|ADDQ01000011.1| GENE 38 29738 - 29968 477 76 aa, chain + ## HITS:1 COG:no KEGG:EF0980 NR:ns ## KEGG: EF0980 # Name: xseB # Def: exodeoxyribonuclease VII, small subunit # Organism: E.faecalis # Pathway: Mismatch repair [PATH:efa03430] # 1 65 1 65 76 78 100.0 9e-14 MPAKEKTFEESLNALEEIVQRLERGDVPLEEALAAFQEGMALSKQCQDTLEKAEKTLTKM MTENNEEIVFEESEEA >gi|284795538|gb|ADDQ01000011.1| GENE 39 29968 - 30849 1203 293 aa, chain + ## HITS:1 COG:BS_yqiD KEGG:ns NR:ns ## COG: BS_yqiD COG0142 # Protein_GI_number: 16079484 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Bacillus subtilis # 1 265 1 271 272 220 50.0 2e-57 MTNFSQQHLPLVEKVMVDFIAEYTENERLKEAMLYSIHAGGKRLRPLLVLTTVAAFQKEM ETQDYQVAASLEMIHTYSLIHDDLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAF QLLSLSQLGLSEKVLLMQQLAKAAGNQGMVAGQMGDIEGEKVSLTLEELAAVHEKKTGAL IEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALN KSTYPALLGIAGAKDALTHQLAEGSAVLEKIKANVPNFSEEHLANLLTQLQLR >gi|284795538|gb|ADDQ01000011.1| GENE 40 30863 - 31678 864 271 aa, chain + ## HITS:1 COG:lin1403 KEGG:ns NR:ns ## COG: lin1403 COG1189 # Protein_GI_number: 16800471 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase # Organism: Listeria innocua # 1 269 3 272 274 353 66.0 2e-97 MKKERVDVLAFNQGLFETREKAKRSVMAGLVYNDKNERLDKPGEKISVETPLHTKGQVMP YVSRGGLKLEKALNVFAINVQGKTMLDIGSSTGGFTDVALQNGARLSYALDVGYNQLAWK IRQDERVVVMERTNFRYSKPEDFTEGVPDIATIDVSFISLRLILPPLHDILKKGGSVVAL IKPQFEAGKEFVGKKGIVRDPETHQMVVEEITRFAMNNGYDVKNLDFSPITGGEGNIEFL AHLVSVEGEGSYQATESIEEVVAHAHQKLAE >gi|284795538|gb|ADDQ01000011.1| GENE 41 31817 - 32266 434 149 aa, chain + ## HITS:1 COG:BS_ahrC KEGG:ns NR:ns ## COG: BS_ahrC COG1438 # Protein_GI_number: 16079481 # Func_class: K Transcription # Function: Arginine repressor # Organism: Bacillus subtilis # 1 149 1 149 149 117 40.0 6e-27 MRKQDRHRLITRLLTEKNIQKQEDFVNYLQEKGVAVTQATISRDIKDMKLIKVPSAEGGY RYSLPLETQANTSAKLAKLLKDAFVAAEQMEKYVVLRTIPGNAAACGSLIEKNYQEKLFA VINDDDSVLMIARTEEAAEKLHKELLSYL >gi|284795538|gb|ADDQ01000011.1| GENE 42 32284 - 33957 1983 557 aa, chain + ## HITS:1 COG:lin1405 KEGG:ns NR:ns ## COG: lin1405 COG0497 # Protein_GI_number: 16800473 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Listeria innocua # 1 557 1 558 563 484 49.0 1e-136 MLQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRGSSDYIRQGAN KCTLEGLFSMPKSQELKQLLEELGIETEEDSLVIQRDISASGKNVCRVNGRIVNITNLKR IGEYLVDIHGQNEHQELMQSERHIDMLDEFGGKKLLAVKEKYTQAYQEYRALEAKVRKRQ KNEKEFAQRMDMLHFQSDEIASAQLVAGEEEQLLEERNKLNNFQKIADALTISYAALNGE DDSSLDKIGTSMNELASIESLDPEYKSLSDTVQNAYYLLQEASGDLSRLIDGLELDEGRL NEVENRLELIRQMKRKYGDSIETILSYYEEITKELAEADFLEGGTGDLEALLAEKQQAAH QQALALRKERKRLAKELEQQILTELKELYLERTEFEVRFTELEHLQENGLDGVEFYITTN PGEPLKPLVRVASGGELSRVMLAMKTIFSQTQGITSIVFDEVDTGVSGRVAQAIADKIYQ ISENSQVLCITHLPQVAAVADEHYFIEKEIVAGRTETSVRILSEKERVNEIARMLAGSEI TKLTIEHAQELLAMAKK >gi|284795538|gb|ADDQ01000011.1| GENE 43 34048 - 34158 178 36 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNDKEQSRFSKITKVVVWLMLIAIVGSTVLTAILSL >gi|284795538|gb|ADDQ01000011.1| GENE 44 34226 - 35182 876 318 aa, chain - ## HITS:1 COG:lin0651 KEGG:ns NR:ns ## COG: lin0651 COG0598 # Protein_GI_number: 16799726 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Listeria innocua # 1 294 1 292 316 182 36.0 6e-46 MINYLLLKNDYFEPCSPDDESLSWISVESPTEEEIERLVNQYHLPTDYLTGVLDDEENAR VEGFRHEKLQTPTLLLFRYPKASISPSGYLQVETVPIALIATVDNKLITVSNGPNDIVHG IQKEAFTHQDLSIEKALILALSWKMALSFNKNLQALIQQTNKLEGELQVATENSQLYQIM DIQKSLVYFEAALTDNLKVLKRLYSAEIFNHPEKHLPFLRDILIELEQGLNTTKIQLKLV DNISNTFSAIVSNNLNNVMKILTSLTIVLTIPTIIGGIYGMNVKLPFAEHEYSFWIIFAI TTLICVISIRILKKKNLL >gi|284795538|gb|ADDQ01000011.1| GENE 45 35457 - 35828 174 123 aa, chain + ## HITS:1 COG:no KEGG:EF0987 NR:ns ## KEGG: EF0987 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 123 8 130 130 170 100.0 1e-41 MVSFSAIMLFWYIFPVIVLFACNFLVSTFSLTERWKIKAPDLAIPFLFIGIHELSKDSYD ESIMPYFVISILLLGVAVALFQAYYYGEILYRRYFKMFWRLTFLLTFVLYVLLILLNISH YLL >gi|284795538|gb|ADDQ01000011.1| GENE 46 36066 - 36548 530 160 aa, chain + ## HITS:1 COG:BS_yllB KEGG:ns NR:ns ## COG: BS_yllB COG2001 # Protein_GI_number: 16078577 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 18 158 1 141 143 206 65.0 1e-53 MGCGRLVLSSGKAGVLAMLMGEYQHNIDAKGRLIVPSKFREELGEKFVVTRGMDGCLFGY PLNEWSQLEAKLQEMPLAKKDARTFVRFFYSAATECEIDKQGRINIPANLRTHASLEKGC VVIGVSNRIEIWSDERWHAFSDEAEENFDELAETMIDFGF >gi|284795538|gb|ADDQ01000011.1| GENE 47 36563 - 37519 980 318 aa, chain + ## HITS:1 COG:lin2147 KEGG:ns NR:ns ## COG: lin2147 COG0275 # Protein_GI_number: 16801213 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis # Organism: Listeria innocua # 5 315 2 310 312 441 72.0 1e-124 MTEEFRHYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKA LAHAKTRLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGF SYHQDAPLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQP IETTGELVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNG RISVITFHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSE NNRSRSAKLRIAEKIKSR >gi|284795538|gb|ADDQ01000011.1| GENE 48 37536 - 37943 546 135 aa, chain + ## HITS:1 COG:no KEGG:EF0990 NR:ns ## KEGG: EF0990 # Name: not_defined # Def: cell division protein # Organism: E.faecalis # Pathway: not_defined # 1 135 1 135 135 206 100.0 2e-52 MAELKKVNDFHYEAPEMDQPTVATEQDRKMQEETLPVPTLLPKKKLKNVSLLEKLIGVVL VCATIGIAIATIQVRTTIVQTMNDITETQAVIKEKEDNALKLEQERSELSKSDRIKDVAK KQGLENNGDNVRTVK >gi|284795538|gb|ADDQ01000011.1| GENE 49 37943 - 40171 2385 742 aa, chain + ## HITS:1 COG:SP0336 KEGG:ns NR:ns ## COG: SP0336 COG0768 # Protein_GI_number: 15900267 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Streptococcus pneumoniae TIGR4 # 9 738 9 748 750 493 38.0 1e-139 MSKRHKFKQFMKKKNLNPMNNRKKVGIILFATSIGLFFLFAFRTTYIVATGKVAGVSLKE KTASLYEGSQVVKAKRGSILDRYGNPIAEDATSYSLYVVLSKKYTGQNNEKLYAEKKDFD DIAEILAKYTKLDKKTALKYLNNGIHEDGSTQYQVEFGTGGQNITLETRQKIEADLKKKK ISGVYFNEHPARLYPNGQFASHFIGYTKAANPDDDKEGLVGAMGLEQAYNDILSGTDGRV YFEKDIYGNALPGTVAEEKKAVDGQDIYTTLDSRLQNTLEDLMTQVNEKYEPVSMTAMLM EAKTGEIVAMSQRPTFNPETKQGLDNNGTWQNLLVESPYEPGSTLKLFTSAAAIEQGVFN PNESFNRVGGITIGGIPINDHDVGNLKDKTSLTYRQAISWSSNIGMVNLEQRMGGDKWVE YLKKFGFGSSTHSGLTSEHTGKLPDNNIVDRANSAFGQGITVTNFQMMKGFSAIANDGSM LQPHYISKIVDKNTGKETITEPQIVGTPIKAQTAQQIRTYMIDTVEDPTYGIAYDIYKVP GYHVAAKTGTAQISDGKGYVDGASQVLSSVVEMVPADNPEYVLYITLRQAKTGSPSEAMA AIANPLMKLALDIKETDPETTKVASDKVTVADYKNMTPAEALANAKVNGVDPVIIGDGEK IKKQSTPSGQTLMPNQKLILITNGTNYMPDLTGWSKSDVTKFGDLLGLTVEFKGEGYVTK QSIAAETEITEKKLTVTLEGTE >gi|284795538|gb|ADDQ01000011.1| GENE 50 40199 - 41164 1070 321 aa, chain + ## HITS:1 COG:SP0337 KEGG:ns NR:ns ## COG: SP0337 COG0472 # Protein_GI_number: 15900268 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Streptococcus pneumoniae TIGR4 # 11 321 9 324 326 296 55.0 5e-80 MEWTQIFIPIVVSFAITVSVMPLFIGYFQMKKQGQVTREDGPTWHSVKTGTPTMGGVVFL VASLITSLAMGLFFHQFTPSLLIILFILVLYGLLGYLDDFIKVFKKRNMGLNSRQKLIGQ IFGGLVFYFVYRSEGFSDTLDLFGLAEVPLGIFYGVFIIFWLVGFSNAVNLTDGIDGLVA GLGTISFGTYAIIAWKQQQFDVVIICLSVIGGLIGFFPYNRKPAKIFMGDVGSLALGGLL AAISIILHQEWTLLLIGLVYVCETASVILQVASFKLFGRRIFKMSPIHHHFEMCGWSEWK IDFVFWSVGLICSGITLWILF >gi|284795538|gb|ADDQ01000011.1| GENE 51 41187 - 42557 1352 456 aa, chain + ## HITS:1 COG:SPy1525 KEGG:ns NR:ns ## COG: SPy1525 COG0771 # Protein_GI_number: 15675424 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase # Organism: Streptococcus pyogenes M1 GAS # 1 452 1 449 452 536 61.0 1e-152 MKKITTYQNKKVLVLGLAKSGVSAAKLLHELGALVTVNDAKQFDQNPDAQDLLTLGIRVV TGGHPIELLDEEFELIVKNPGIPYTNPLVAEALTRKIPIITEVELAGQIAECPIVGITGT NGKTTTTTMIGLLLNADRTAGEARLAGNIGFPASTVAQEATAKDDLVMELSSFQLMGIET FHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTAEDTLILNWNQVELQTLAKTTAA NVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADELGIPGSHNIENALAAICVAKLKNVSNV QIRQTLKNFSGVPHRTQFVGEVQQRRFYNDSKATNILATEMALSGFENQKLLLLAGGLDR GNSFDELVPALLGLKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSEKDD TILLSPACASWDQYPNFEVRGEAFMQAVQQLKESEM >gi|284795538|gb|ADDQ01000011.1| GENE 52 42562 - 43653 1248 363 aa, chain + ## HITS:1 COG:BH2565 KEGG:ns NR:ns ## COG: BH2565 COG0707 # Protein_GI_number: 15615128 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Bacillus halodurans # 1 360 1 359 363 385 53.0 1e-107 MKILVTGGGTGGHIYPALSFVEHVKKEAPATEFLYVGTENGLESQIVPKAKIPFKTIKIQ GFKRSLSPQNFKTIYLFLTSINKAKKIIREFQPDVVIGTGGYVSGAVVYAAHQLKIPTII HEQNSIPGMTNKFLSRYVDKIAICFPDVASFFPKEKTILTGNPRGQEVVTVEKSAILSEF GLDPAKKTVVLFGGSRGALKINQAFEQAFPLFEEREYQVLYASGERYYQELQESLKLSEK KLTNISVQPYIDKMVEVMANTDLMVGRAGATSIAEFTALGLPAILIPSPYVTNDHQTKNA QSLVKVGAVEMIPDAELTGARLVAAIDDILLNNEKRQQMATASKGEGIPDASDRLYQVVK TLV >gi|284795538|gb|ADDQ01000011.1| GENE 53 43662 - 44786 1025 374 aa, chain + ## HITS:1 COG:lin2140 KEGG:ns NR:ns ## COG: lin2140 COG1589 # Protein_GI_number: 16801206 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division septal protein # Organism: Listeria innocua # 87 327 12 252 270 150 35.0 4e-36 MWKISNENDIFKKRKPLPPKKSEESQPELTPWQKQNQEYLKKQAEEAASKGENEQAEVTI TLQEQSQEEPQQHLPQETVEEEEHFADRLPNVKKTRNKRLYRRLAFILTCLGTAILVALY FVSPLSRLSEVTVSGNKSVESQAIIQQSKLETGSGLWEQYSNRNYFSANIQKKFPIIKKA NIKLNGINSFKIDIQEYQIVALAATKGGYHPILENGKTLAETTKAAESGKPIFENFKEDK LIPELMASYNKLPQEIKQGISEIKYAPSKTNKDLINVYMNDGNRVIVNISDLSEKMAYYS QVAEQMDKPGIVDMEVGIFSYPYEKESEETGSEVSEDSAVENQEVVDPNAGVATDEANNG TPTNGENQEVQQAE >gi|284795538|gb|ADDQ01000011.1| GENE 54 44858 - 44926 57 22 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVKLEEVNNTKKEIVKRTPLSA >gi|284795538|gb|ADDQ01000011.1| GENE 55 44960 - 46282 1468 440 aa, chain + ## HITS:1 COG:L0207 KEGG:ns NR:ns ## COG: L0207 COG0849 # Protein_GI_number: 15673852 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell division # Organism: Lactococcus lactis # 1 440 1 456 456 442 50.0 1e-124 MAKTGMYVGLDIGTTSVKVVVAEYIEGQMNIIGVGNAKSDGLNRGIVVDIDQTVQAIQRA VRQAEEKAGIQIKSVNVGLPANLLEVESCQGMIAVSSESKEITDEDVRNVASAALVRSTP PERQIVAILPQDFTVDGFEGIKDPRGMLGVRMEMFGVVYTGPKTIIHNIRKCVEKAGLGI NELVITPLALTETILTDGEKDFGTIVIDMGGGQTTTSVIHDKQLKFTHVNQEGGEFITKD ISIVLNTSFNNAEALKINYGDAYPERTSANEEFPVDVIGKSEPVRVDERYLSEIIEARVE QILRKSKEVLDEIDAFELPGGVVLTGGAASMPGIVDLAQEIFEANVKLYVPNHMGLRNPV FANVISIVEYSAQLNDIYHIAKYAIPGEKSKPAQSVAVQQEVRYDTYAEQPQEEYEEFNE RESGEKVTGKIKDFFSNIFD >gi|284795538|gb|ADDQ01000011.1| GENE 56 46309 - 47541 1594 410 aa, chain + ## HITS:1 COG:L0208 KEGG:ns NR:ns ## COG: L0208 COG0206 # Protein_GI_number: 15673851 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division GTPase # Organism: Lactococcus lactis # 1 408 1 416 417 436 65.0 1e-122 MEFSLDNNINNGAVIKVIGVGGGGGNAVNRMIEENVKGVEFITANTDVQALKHSKAETVI QLGPKYTRGLGAGSQPEVGQKAAEESEQVISESLQGADMIFITAGMGGGTGTGAAPVVAK ISKELGALTVGVVTRPFSFEGPKRGRFAAEGIALLKENVDTLLIISNNRLLEVVDKKTPM LEAFREADNVLRQGVQGISDLITAPGYVNLDFADVKTVMENQGTALMGIGVASGEERVIE ATKKAISSPLLETSIDGAEQVLLNITGGLDMTLFEAQDASDIVTNAASGDVNIILGTSIN EDLGDEIRVTVIATGIDESKKDRKPHRQTRQAVQPMQQTTQSVEMDQPKSQEEASAFGDW DIRREQNTRPKVDESSLEQVDKKEFDTFHREEPNHNDDELSTPPFFRRKR >gi|284795538|gb|ADDQ01000011.1| GENE 57 47558 - 48235 608 225 aa, chain + ## HITS:1 COG:lin2137 KEGG:ns NR:ns ## COG: lin2137 COG0325 # Protein_GI_number: 16801203 # Func_class: R General function prediction only # Function: Predicted enzyme with a TIM-barrel fold # Organism: Listeria innocua # 5 224 6 224 229 232 54.0 4e-61 MIAENLTNINNQLQLACKSSQRSVADVTMIGVTKSVGIEEAAELVQLGVQNLAENRVDKL LEKKAGLEKFNDIQWHLIGNLQRRKVKLIINEIDYFHALDSLSLAKEIQKRATKVIRCFV EVNITGEESKHGFRKEDVLPFIQELADLDKIQIVGLMTMAPFGASEEVLHATFRELKELQ MTVNEKHLSFAPCTELSMGMSNDFPIAVEEGATFIRIGTALFRDA >gi|284795538|gb|ADDQ01000011.1| GENE 58 48249 - 48893 764 214 aa, chain + ## HITS:1 COG:lin2136 KEGG:ns NR:ns ## COG: lin2136 COG1799 # Protein_GI_number: 16801202 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 124 211 64 151 152 91 51.0 8e-19 MSIFNKDALSSFFGLSGEEDDYYDNYEEYEERKAVNEPPRRAARPKPQRPVQQQESYNQP AYTQQSEPVVEKPFARYRSAEAHQERDTQQAAYTEKKVVSMRSSNQSATTNTRRAQESTA NAKTHKITIIEPRVYSEAMSIAKHLFAEEAVLVNFTLVEEDQARRIVDFLTGTVYALDGD IQRVGNEIFLCTPANMEIDSATAQSLANKQFFDF >gi|284795538|gb|ADDQ01000011.1| GENE 59 49108 - 49179 146 23 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVGIIVLNLAAGGLAVILRAIVY >gi|284795538|gb|ADDQ01000011.1| GENE 60 49206 - 49988 1342 260 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375583|ref|NP_814737.1| S4 domain-containing protein [Enterococcus faecalis V583] # 1 260 1 260 260 521 100 1e-147 MNANVYQHFRKDEHPFIDTVGDWLEQVEMQYAPYLTDFLDPRQAYILETLIRQNSDLSFT FYGGYEQAERKRCLIYPAYYIPEETDFGVVLFEIIYPSKFATLSHGKILGTLMNVGVRRE AFGDIISDGDKWQVFIAQEVAGFVVNQVDKIGKITVRLEERDYTQILIPKDGWQEERTTM SSLRLDSVISAVFNISRQRSKQLIESGKVKVNWTETTRPDFALDLLDIVSIRGFGRLQIQ ELEGKTKKEKFRVLLGVLRK >gi|284795538|gb|ADDQ01000011.1| GENE 61 49999 - 50088 84 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFKKTILAVHSDEVVYNKKSKIFAISGLV >gi|284795538|gb|ADDQ01000011.1| GENE 62 50140 - 50841 961 233 aa, chain + ## HITS:1 COG:SP1661 KEGG:ns NR:ns ## COG: SP1661 COG3599 # Protein_GI_number: 15901496 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division initiation protein # Organism: Streptococcus pneumoniae TIGR4 # 1 194 1 183 262 124 43.0 1e-28 MALTPLDIQNKDFSTKMRGYNQDDVDDFLDQVTRDYEDALQKNRELEKSLKHAEEKLQYF NELKDALNQSIIVAQDTADKVKSSANKESEMIITSADNQAKETLVEAERKSNAMIADAEA KSTQILAEAIERARQLAGETEDLKKKTRVFHQRLSLMLETQLEQVKSEEWEEILKPFSSY VGDKHTAVKEILDEQDLDNENETVVNSEENTDAVVEKKPVIEVTEETIEEESK >gi|284795538|gb|ADDQ01000011.1| GENE 63 51152 - 53932 3301 926 aa, chain + ## HITS:1 COG:L0350 KEGG:ns NR:ns ## COG: L0350 COG0060 # Protein_GI_number: 15673845 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Lactococcus lactis # 1 926 1 931 932 1358 68.0 0 MKMKETLQLGKTAFPMRGNLPNREAEWQKDWEEKGLYEQRQKLNEGKPTFVLHDGPPYAN GNIHLGHSLNKISKDIIIRSKSMSGFRSPYVPGWDTHGLPIEQVLTNKGVKRKEMTVAEY REKCKEYALSQVDKQRNDFKRLGVSGDWEHPYITLDPEYEAAEIRVFGKMAEKGYIYKGL KPIYWSPSSESSLAEAEIEYKDVKSPSIYVAFNVADGKGLLDNETAFVIWTTTPWTLPAN LGISVNPDFTYVEVKADGRKFVIAKDLLATVKEAIGWEEVEVLREFSGEKLDRMTAQHPF YDRTSLVMLGDHVTLDAGTGLVHTAPGHGEDDYIVSRKYDLPVISPVDSRGVFTDEAPGF EGIFYDKANPMITELLEEKGALLKLDFFTHSYPHDWRTKKPVIYRATPQWFASISKFRQD ILDEVEKVDWLIPWGKTRLYNMIRDRGDWVISRQRAWGVPLPIFYAENGEAIITPETIEH VANLFAEHGSNIWFMREAKELLPAGFTHPGSPNGEFTKETDIMDVWFDSGSSHEGVLRER EELTFPADMYLEGSDQYRGWFNSSITTSVAINGVAPYKSIISQGMVLDGEGRKMSKSLGN TILPEKVINQMGADILRLWVSSVDAEADVRVSMDILNQVSEVYRKIRNTMRFLLANTSDF NPAEHTVAYADLRSVDKYMTVRLNQVIQEIRENGYEKYNFMHIYRTVMNFLTVDLSSFYL DFAKDVVYIEAENDYQRRCMQTVFYQTLVSLTKLLTPIIPHTAEEIWSFLQEEEEYVQLA EFPGYETFTNEEELMDTWAAFMDFRDNVLKALEEARHSKLIGKSLEAKVTVYPNEQIRQL MTAVDADIAQLLIVSDFEVSKEVAPSEAVQFEDMAILVEKAEGETCDRCRSVRQDVGSDE KLPTLCGRCAHIVEENYPEAVAEGFE >gi|284795538|gb|ADDQ01000011.1| GENE 64 53984 - 55507 1720 507 aa, chain - ## HITS:1 COG:L0044 KEGG:ns NR:ns ## COG: L0044 COG0364 # Protein_GI_number: 15674202 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate 1-dehydrogenase # Organism: Lactococcus lactis # 3 507 4 503 503 665 64.0 0 MNEKVALFTIFGGTGDLAKRKLYPSLFRLYKKGLLAERFAVIGTARREWTDEYYREIVRE TIQDLNPTAEEVTEFSSHFYYQSHNVNDTEHYNTLKELSDRLNEQYHLEGNHIYYLAMAP QFFGTIVNHLKSQHIISEEGFDRLIIEKPFGSDYESAYELNEEIRAAFPEQDIFRIDHYL GKEMIQNISAIRFANNIFESQWNNRYIDNVQITFAESLGVEDRGGYYDHSGALKDMVQNH ILQVVALLSMEPPVAFSEKEIRTEKVKALRAIRLYSEEEALQNFVRGQYGEGQLADQTFA AYRDEPNVAETSSTETFVAGKFLIDNFRWSGVPFYVRTGKRLTEKGTRINIVFKQVPINV FKDDTCEECDKTDLPPNVLTIYIQPTEGFSLTLNGKEIGQGFNTTPVKLDFRQSAEMTEN SPEAYEKLLLDCLNGDSTNFSHWDEVAQSWRIVDIIRHAWDKTDVSFPNYAAGTMGPQAA FDLLEKDGFTWEWQPDNWYRDRGQLDQ >gi|284795538|gb|ADDQ01000011.1| GENE 65 55507 - 56175 843 222 aa, chain - ## HITS:1 COG:SPy0450 KEGG:ns NR:ns ## COG: SPy0450 COG1321 # Protein_GI_number: 15674572 # Func_class: K Transcription # Function: Mn-dependent transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 1 215 1 215 215 158 40.0 7e-39 MTPNREDYLKLIFELGGDEVKVNNKQIVSGLDVSAASVSEMISKLVKEDLVEHSPYQGVQ LTEKGLKKASTLIRKHRIWEVFLVEHLNYTWNDVHEEAEVLEHVTSQTLVNRLADYLNHP EFCPHGGVIPEDNQPIHEEKRQTLTDYPVGTKIRIARVLDEKELLDYLVSIDLNIQEEYT IKEIAAYEGPITIYNENKELSVSFKAANTIFVEPLIRESEEN >gi|284795538|gb|ADDQ01000011.1| GENE 66 56347 - 56715 290 122 aa, chain - ## HITS:1 COG:no KEGG:EF1006 NR:ns ## KEGG: EF1006 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 122 1 122 122 243 100.0 1e-63 MKKHWTFLVGASLLTGLAGSILWKKNKQLPSPQELQHNYTGHWWFVDVKKATQHTLEITS SFNVFIDGKQTHALLVELTPKRLVILDKLGYHLIIQCENGVPATLYDEADDETYTLERAI YN >gi|284795538|gb|ADDQ01000011.1| GENE 67 56914 - 57645 726 243 aa, chain + ## HITS:1 COG:CAC0144 KEGG:ns NR:ns ## COG: CAC0144 COG1489 # Protein_GI_number: 15893439 # Func_class: R General function prediction only # Function: DNA-binding protein, stimulates sugar fermentation # Organism: Clostridium acetobutylicum # 1 230 1 226 230 192 45.0 5e-49 MKYPNVQLAYFIERPNRFIAHCRLMETNEEVVTHVKNTGRGKEVFLPGAIVALSYQPSPK RKTDYDLIAVKKGSFWINIDSQVPNTLVNEALKNGQIVLPGLVGTIQTVKREQRFAHSKF DFLVETDADEQAFVEVKGMTLENKGIGAFPDAPTLRGLKHVTELMAATKAGYRCYILFVV QFEEIKQATIHQEMQPAFAENLGAAIDQGVQVLAYNCHVTPATIELKSQVTFDLLQAFDD PNK >gi|284795538|gb|ADDQ01000011.1| GENE 68 57751 - 58749 1372 332 aa, chain + ## HITS:1 COG:lin1837 KEGG:ns NR:ns ## COG: lin1837 COG0673 # Protein_GI_number: 16800904 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Listeria innocua # 2 332 1 327 327 283 46.0 3e-76 MIHLGVIGTNWISHQFVAAALETGAYDLTAVYSRKLATAQEFGSRYGDVEYAIDLETFFG IAHMDTVYIASPNSLHFEQAKQAILAKKNVIVEKPAFSTPDEMAEIIELANKNRVYFFEA ARNIHEQSFQKIAELLPLKNQILGANFTYMKYSSRYDQVLEGKEPNIFSPHFSGGALADL GVYLVYAALGWFGVPNESHYFASKIATGVDGLGTIILRYDQFDVTLNTGKISDSFAPSEI YFENGTLILDSVNAISSAEYHDRAHEERDVLDIQVADNPMIEEARDFAAVLNNPTDKYWG TKYEEWVELARNVNKVVTDLRHSAGIIFDADK >gi|284795538|gb|ADDQ01000011.1| GENE 69 58776 - 60077 1307 433 aa, chain + ## HITS:1 COG:SPy1369 KEGG:ns NR:ns ## COG: SPy1369 COG0513 # Protein_GI_number: 15675301 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Streptococcus pyogenes M1 GAS # 4 369 2 358 361 293 43.0 4e-79 MRFLEQLPEAWQEQWQASGFNEPSTIQEKSFTPLREGENVLGISPTGTGKTLAYMLPLLL TVEKGQGNQLLIIAPSQELAMQIAEVARTWAKPLQLTVQTLIGGANVSRQIDKLKKRPEV LIGTPGRILELMKNKKVKAQLLKTIVMDEVDQLFQEEELSLTKQILTHTPTEYQLVFYSA TADRVVNQAQSLSQKLQVIDVTEEDTSAGQVAHYFIRLAPRKKADYLRRLAHTEAFRSMV FFNQVADLGAAEEKLVYENVPAIGLASDQSKQLRKLAIDQFKAERVKLLLTTDIAARGLD FTGVPYVVNVDVPLTEESYIHRSGRVGRMGAQGAVITFINDGTKRDYQRLMKQLAIPYQE IFLYDGALHEQPKAKDELEKKNVVKDTYSEKKSTKERKPETVNSVVKEPQETRKKKKNKK KNTKNKGARKAKK >gi|284795538|gb|ADDQ01000011.1| GENE 70 60122 - 62827 2705 901 aa, chain + ## HITS:1 COG:lin1832_1 KEGG:ns NR:ns ## COG: lin1832_1 COG1221 # Protein_GI_number: 16800899 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Listeria innocua # 1 434 1 432 432 476 56.0 1e-133 MKSRKEEILALLQKNETGLTAGAVAEQLMIDRSNASRYLNELFKEKKITRSTGRPVIYSV PTINEGEQVHVDESTSVSFDTLVGANDSLKVSIQQAKAAILYPPRGLHTIIFGKTGTGKS LFAECMYRFAIDSKTLDEDAPFVSFNCADYAQNPQLLFGHIFGVKKGAYTGANEDSPGLM AKADGGILFLDEIHRLPPEGQEMLFTFIDKGVYRPLGESGQTYEASVQIIGATTESSENF LTTFNRRIPMSITLPSLDARTLDERYAIISLFIQQEATRLGQQIDIEREAVLAFMLYDAE GNIGQVKRDLKLVCAKSFLYYRTHNLEHLVIRKRDLSLPVQKGLLKIKEVPERLDQFVDS KSNYLSFQPGTNKIVWSQDPARDMQVYNEIEEKVADLSEADLENVDLEELISKDMNAYFK NYVEELTQHSLHKELLPEAIWDLTNRLYDIAEERLEHTYNETARFAFALHLQSTIERVKE GHVIVHPDLNNVRKNMKKEFQVALDLSSIIEEENNIEIPFDEIGFISMFLSINVGKEERT PENNVGVFVLMHGDSTASSMLKTAQELLGTSIGTAMNMPLTMEVQTMYEQLRNQVITQKE SLNNGILLLTDMGSLNSFGNMLFEETGIRTKAITMTSTMIVLEAIRMASVGRSLEDIYQN IQLSFESVVREQFRSSLQKRQNVKKAVIVTCFTGEGVAAKLYQRILPVIDETKVELIQMQ FIERETFKKHIDNLMEEYEIKAIAGTVDVEYQNIPFFSVYDIFDDEKLNVLKRIASDEVA IDTIVHSLSGVITSVDSLQKLILMLQKTVHQIQTDMHIIVEPGVDAGIMIHLAFLVDALI KGEEARTFPNLAEYVKTHRLEIDVVRTNFMLIERAYRVTIPEAEVAHVTQMFLENEIKSK Q >gi|284795538|gb|ADDQ01000011.1| GENE 71 63056 - 63382 458 108 aa, chain + ## HITS:1 COG:lin2831 KEGG:ns NR:ns ## COG: lin2831 COG1440 # Protein_GI_number: 16801891 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIB # Organism: Listeria innocua # 4 104 2 100 101 121 68.0 3e-28 MAKKTIMLVCSAGMSTSLLVTKMQKAAEDRGMEADIFAVSASEADTNLENKEVNVLLLGP QVRFMKGQFEQKLQPKGIPLDVINMADYGMMNGEKVLDQAISLMGSSN >gi|284795538|gb|ADDQ01000011.1| GENE 72 63405 - 63725 460 106 aa, chain + ## HITS:1 COG:lin1830 KEGG:ns NR:ns ## COG: lin1830 COG1447 # Protein_GI_number: 16800897 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIA # Organism: Listeria innocua # 8 101 5 98 100 102 62.0 2e-22 MDGQQNLEAIMGLIMYGGNAKSDAMEAIAAAKSGDFELADKKIADAEESLVHAHHSQTGM LTEEAKGNNMQVTLLTVHSQDHLMTAIAFTDLAKEIIDLYRRIDNE >gi|284795538|gb|ADDQ01000011.1| GENE 73 63791 - 65038 1534 415 aa, chain + ## HITS:1 COG:lin2832 KEGG:ns NR:ns ## COG: lin2832 COG1455 # Protein_GI_number: 16801892 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Listeria innocua # 1 415 1 430 435 501 65.0 1e-141 MDGFVQWMEKHFMPKASVIAAQRHLVAIRDAFVVTMPLMILGALAVLINNIPIPGYEDFL NKIFPMMYNDAPIWKSFGGNIWNGTFAIFAVLVAFLVAHNLVKSYGKDGIAAGTVSVASF FAVGGLEGMGATGLFIALIIALISGELFQRLSGNPKLVIKMPDGVPPAVAKSFAALLPAM ITISLFSLITSILFALGIDNIVISFYEAVQQPFMGLANSYPSALLLAFITPFLWFFGLHG ANMVDPLMQTINVPAIDANIKALEAGKAIPYIVNKPFFDSFVNLGGTGATLGLLIAIFIV GRRNKPYKVITNLSLAPGLFNINEPVMFGLPIVLNPIMFIPFILVPMVLVTVAYVATATG LVPAATFMPPWVTPPIIGGFLAAVNLLISILIYMPFVKVATDQYLKQEAAAEAAE >gi|284795538|gb|ADDQ01000011.1| GENE 74 65121 - 66515 1828 464 aa, chain + ## HITS:1 COG:BS_ydhP KEGG:ns NR:ns ## COG: BS_ydhP COG2723 # Protein_GI_number: 16077651 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Bacillus subtilis # 2 464 6 465 465 643 65.0 0 MKYQFPENFWWGSAASGPQTEGVFEGDGKGQNIWDFWYQEAPEKFFQQVGPDKTSQFYKK YQEDIQLMKETGHNSFRTSIQWSRLIPDPTTGKVNQTAVDFYNQVIDDLLEHGIEPFMNL YHFDMPMVLQEKGGWESREVVDLYVDFAKTCFELFGDRVKKWFTHNEPIVPVEGGYLYGW HYPDKVNLKEGIQVLYHEALASAKAIAVYHSMNLSGEIGIILNLTPTYPRDEHNEADVNA AKFVDGFFNRSFLDPAVKGHFPEDMVAWAKANDLLPETTLEDLAIIAENTVDLLGVNYYQ PRRAKAKETPVETRPEGLLPEDFYDVYDMPGKKMNPYRGWEIYEKGIYDTLMNLKENYGN IRCYISENGMGVEGEERFVNEQGVIEDDYRIEFVQDHLKWVHQAIQEGSNVQGYHMWTCM DNWSWLNAYKNRYGFIAVDLDDDAKRIIKKSGRWFKEMTANNGF >gi|284795538|gb|ADDQ01000011.1| GENE 75 66573 - 67766 1184 397 aa, chain + ## HITS:1 COG:L174946 KEGG:ns NR:ns ## COG: L174946 COG4552 # Protein_GI_number: 15672154 # Func_class: R General function prediction only # Function: Predicted acetyltransferase involved in intracellular survival and related acetyltransferases # Organism: Lactococcus lactis # 15 336 9 332 350 171 35.0 2e-42 MTTKRVKKMGKEEMKEMFDLVIYAFNQEPTAERQERFEKLLSHTQSYGFLIDEQLTSQVM ATPFQVNFHGVRYPMAGIGYVASYPEYRGEGGISAIMKEMLADLAKQKVALSYLAPFSYP FYRQYGYEQTFEQAEYTIKTEDWPRVKRVPGTIKRVSWADGKEVIKDVYLENQRAHSGGV IRETWWLDYTLNRASKPNNQAIYYSSEGKAEGYVIYRIAAGTFEIVEWNYLTNTAFKALA GFIGSHSGSVQSFHWINGFAGKDLNDLMPTPAASVKILPYMMARIVELQTFLEKYPFQSG KKETYSLEIEDSYGPWNEGIWTITIDEQRKATVTKGAAEKEGTAALKADIQTWTQLFLGY RSAETLSFYERLQGDATTAQRLGQRLVKGMPILEDYF >gi|284795538|gb|ADDQ01000011.1| GENE 76 67849 - 67968 189 39 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAKTKQEKVARNNKIGQYIAIATGLYYLGKMILDRRQKK >gi|284795538|gb|ADDQ01000011.1| GENE 77 68194 - 68526 560 110 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375603|ref|NP_814757.1| hypothetical protein EF1023 [Enterococcus faecalis V583] # 1 110 1 110 110 220 99 2e-56 MAITINIYYSGTNGRAREFAKEMIASGIVEAIRAEKGNSRYEYFFPMDDEETVLLIDSWT DQEALDKHHASPMMTRITELREKYDLHMKVERYVSDVTDPLTKDAAFIRK >gi|284795538|gb|ADDQ01000011.1| GENE 78 68640 - 71285 2591 881 aa, chain - ## HITS:1 COG:lin1981 KEGG:ns NR:ns ## COG: lin1981 COG0574 # Protein_GI_number: 16801047 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase # Organism: Listeria innocua # 1 857 1 860 879 931 55.0 0 MKKFIYSFNETHNEGKETLGGKGANLAEMTRLGLPIPQGFTITTRCCMDYLADATFFEEH LQSEILKAVKNLETETGKSFTADNEILLVSVRSGAAFSMPGMMDTILNLGLNDQRVKKFA TLTSPGFAFDCYRRLIQMFGDVVYHIPKELFDQQKERLEQELNKKITAFQEEDHFALIVR YQEVFEQHQVVFPQDPVAQLFEAIKAVFDSWNNQRAVVYRNLHHIAHDLGTAVNIQEMVF GNRGLDSGTGVVFTRNPVTGENQLFGEFLLNAQGEDVVAGIRTPEPIRRLRLTMPKVYQD FRHYAELLEYHYRDMQDIEFTIENEKLYILQTRNGKRTAAATVKIALDLAKENRITKQEA LLRVTPDTIDQLIHPVFDQEKRQHMERLAMGLPASPGAASGQIVFTAEKAKELTNLGKKV ILVRQETSPEDIEGMVVSEAIVTSRGGMTSHAAVVARGMGTCCVTGCESLTVNEETKQLH CGPQVILEGTIISVDGSTGEIYLGEIPTISADNNDDLQELLSWADAYADLTVRANAETTQ DLETAIRFGAAGIGLARTEHMFFGEERVLEMRRLILAESEKEATYALEQLLHFQQEDFYQ MLKVVQDKPMVVRLLDPPMHEFLPHEKNDIQLLAKQLQRFPVTIAKQIERLQETNPMLGH RGCRLGVTQPQIYKMQVTALFTSAIRLVKEGITVYPEVMIPLIAEKEELLYLKRILKETI DGLFEEHKMTPFPYEIGTMIELPRACLIADQLAEEADFFSFGTNDLTQMTYGFSRDDIGK FINTYREKKIITQDPFQSLDQTGVGQLIQLAVEKARRTKPNMSIGVCGEVGGDPQSITFF QTLGLNYISCSPYRVPIAKLAAAQAKILTEPAVTEEQMVLL >gi|284795538|gb|ADDQ01000011.1| GENE 79 71455 - 72084 731 209 aa, chain + ## HITS:1 COG:SA1393 KEGG:ns NR:ns ## COG: SA1393 COG0517 # Protein_GI_number: 15927144 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Staphylococcus aureus N315 # 1 204 1 207 207 160 42.0 1e-39 MKLSKRQEQIIAVVKEHQPVSGERISDILAVSRATLRSDLSFLTLSGILKASPKVGYTYE SDNMEAFFFFDVFQTKVQEIMSPPLMVAQDTSIRDAITNLFMYDVGSLYVMDEAKELLGV LSRKDLLRASLNTNIDGTPVAVCMTRVPHVKTCTPEFTILEAADTLQKYEVDSLPVVEKE NPKKVIGKITKTKILTYITQQAKEAAQNR >gi|284795538|gb|ADDQ01000011.1| GENE 80 72097 - 72909 1011 270 aa, chain + ## HITS:1 COG:lin1980 KEGG:ns NR:ns ## COG: lin1980 COG1806 # Protein_GI_number: 16801046 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 264 1 264 270 224 44.0 2e-58 MKKEIIVYTISDSLGETSQKLLAAASAQYPDISFLNRYNFSFVTTEEELLEILKDALKDK ALVVSTLVSKQLITAAKEFSERTGLLYLDLMAPFFELIQAKAGVDPIEEPGRRHQLDRAY FDKISAIEFAVKYDDGKNPQGFLNSDILLLGVSRTSKTPVSMYLANQGYRVSNLPLIPEV PLPSILEEMDPQKMIGLVCSPEALGQIRSSRLASLGLGNETSYTNVERIEQELAYAEEIF AKYGIPVIDVTAKSVEETAFLIKEKLDERN >gi|284795538|gb|ADDQ01000011.1| GENE 81 72980 - 75511 2413 843 aa, chain - ## HITS:1 COG:lin1803_2 KEGG:ns NR:ns ## COG: lin1803_2 COG2898 # Protein_GI_number: 16800871 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 249 837 1 585 613 488 42.0 1e-137 MKQIIHWIKTHTGLLKTLFVIAVSIIVVAQLLSIGKTISFEQLKQIFDEIPLWKLLLMMV IGLVSVTPMLNYDLTLNRILNLKVSKRELLESSWIVNTINNIGGFGGLVSMGLRSEFYGN KTEEKKILPALTHILLFVLSGLSIYSILCFFLVQFDPKMAYLQQYWIWLLGGGLYFPLLY LILHFQKNSSFGNLDAKNRLSLVVSSFLEWTGVLITFISIGYLLDVPIPLIDIVPLYVAA SIIGIASMIPGALGSFDVMMILGLSNLGVDREIIVLWLLLYRLFYYIIPFLIGCLFFTKH LSQKLDTHYRQLLKQITLEIAHKLEVVLLYFSGIMMVLLATIPEAFTQVHWLRDINPFRS HIIIQIPSIVLGFALLIMGRGIADRVKRAYYPTIILLIGAILYSFVVDFSMFSIFYLAIL LFIVIFSKSELYREQLVYSWEWMTIDGFIFGLLTLLYLVIGVYNLPNFPHHRHHFVEFFL FPSERIWLSGFIAILLVMSFNFLFVRYLQGKKHQVGEFPEDSILHNILTTYGGNIDSELV FLHDKQVFLYPKEEPTVFLQFNTINNKCVVMGNPSGNKEDFPAAIDAFLKETDRFGYVPV FYETNEDSVMLLHEYGYEFIKMGEEALVNLETFTMSGKKFKGTRAVFNKITKAGYSFDVL QPPFSAEQMHELKAISDSWLDNRKEKGFSLGFFDEAYLQRNPIAVVRNAEGEMVSFANII PSYTNEVGTIDLMRHHKEKAPSGSMDFLFIHLFEYMKTENIHYFNLGMAPLANVGQSRKS FIQERIAALIYEFGSEIYSFQGLREYKEKFASKWQPRYTLYSKSSWIVYVMIALLIVDQK NID >gi|284795538|gb|ADDQ01000011.1| GENE 82 75508 - 76242 517 244 aa, chain - ## HITS:1 COG:lin2547 KEGG:ns NR:ns ## COG: lin2547 COG0596 # Protein_GI_number: 16801609 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Listeria innocua # 10 240 5 233 239 102 28.0 8e-22 MVIEKYFQTIDGSQIFYQIFGKETNYPLVLLHGNGNDHTFFNYQISYFSKEYQVIAVDTR GHGRSTNTQSQLTFPLLAEDLAGIIQQEHLTKINLLGFSDGANIAMVFTHLYPDFVNKLV LNSGNVTMSGLKKYVTIATYFQYWFCRIGAFFSKKLRARLPIVALLFEDTGLTKQDLEHI PCPTLVITGSRDLIALSHSRAIADAIPDGKLVLVNKQGHLFAKNSPDIFNKTIEKFLKEM KVSK >gi|284795538|gb|ADDQ01000011.1| GENE 83 76419 - 77003 532 194 aa, chain + ## HITS:1 COG:no KEGG:EF1029 NR:ns ## KEGG: EF1029 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 194 1 194 194 337 96.0 1e-91 MSLIVLIGAQAVGKMTVGKALEKQLDAKLLFNHQTIDLFANYLGYTERAFQLSDSVRKGL FQAFVENPATNTTKNIIFTVVISFDQEQDFQFLEEISEIFLNKHESVYFVELVSSTAIRL ERNVHPERLEAKPSKRDVDFSRKELLNTFKEHRLVSHEGELESTFPNVKITKINNSNMTP EEVATKIIATFGLT >gi|284795538|gb|ADDQ01000011.1| GENE 84 77026 - 78081 1033 351 aa, chain + ## HITS:1 COG:no KEGG:EF1030 NR:ns ## KEGG: EF1030 # Name: not_defined # Def: endonuclease/exonuclease/phosphatase family protein # Organism: E.faecalis # Pathway: not_defined # 1 351 1 351 351 670 99.0 0 MKKFFKYLGSLMVLLLSIALILIGYLTFREFRPRAVEPVAISKQFSEQTIEKKQSISLVT YNIGYAGLGQTEDFFMDGGKTVQPVNKAMVQQNLTGIEGTLKELPAMIYLFQEVDRRSQR SYEVNQEEELQKQLQLNSAFAYNFKVDYVPIPWPPIGRVESGLLTLSNEKITEAKRIALP NPFRWPVSISNLKRALLETRFPIKGTDKELVVFNLHLEAYDNGEGKIAQSKKLADVLSQE YAKGNYVIAGGDFNQVFKGSHRYPDLGEAGWAPGEIDPADLPKHFSLAYDDQQPTVRVLN KPYTGSYETSQVYVIDGFIVSDNVAVHSVKTKDEQFKYTDHQPVKMEVGLK >gi|284795538|gb|ADDQ01000011.1| GENE 85 78130 - 80367 1476 745 aa, chain - ## HITS:1 COG:CAC1464 KEGG:ns NR:ns ## COG: CAC1464 COG0178 # Protein_GI_number: 15894743 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Clostridium acetobutylicum # 2 745 8 750 755 800 51.0 0 MEWIEIKHATQNNLKNISVNIPKKQLTVVTGLSGSGKSSLVFDTLAAESRRELNDTFSSF VQNYLPKYGRPEVEKIENLPVAIVIDQKKVAGNSRSTVGTYTDIYTFLRLLFSRAGSPFV GYSDTFSFNHPDGKCPTCDGLGKITEINLHQLVDYDKSLNEGPIDFPTFTVGNWRWKRYA HSGLFDLDKKIKDYSPEELALFLYAPQQKLANPPKEWPHTALYEGIVPRMQRSILHTDEG KRHQKYLNHFVTVKRCPDCLGSRVNERVRSCKINQKSIADAVDMPLTELHSFIRSMDLSL IKTIQEELLVRLEALINIGLSYLTLGRATETLSGGEAQRIKIAKYVNSALNDIMYILDEP SAGLHPKDIERISRALLNLKNKGNTVVLVEHNPQLIREADFIIDIGPFAGENGGHVQFSG TYDAFLASKTLTSQALQEPLPLNDQPRKARKSLSIEHATLHNLNNLSIEVPLGVLTVICG VAGSGKSSLAEEIYQKAQADNQEIIHLSQKSITANLRSTPMTYLNIFDKVRKLFAEENHV SPALFSYNSKGACPTCKGKGIIVSDMSFMEDVTSVCETCHGTRYKEEVLHYLYNGKNIVE VLALSVKDGYDFFKDQPFALSLKNLLEVGLSYLKLNQSLSTLSGGELQRVKLADTLHQKK AIYLMDEPTDGLHLIDIQQSLQLFNRMVEEGNSLILLEHHIDVIKSADWLIELGPEGGEN GGQLLFTGTPANMLNSTHSITKGYL >gi|284795538|gb|ADDQ01000011.1| GENE 86 80529 - 82467 2116 646 aa, chain + ## HITS:1 COG:SPy0902 KEGG:ns NR:ns ## COG: SPy0902 COG0154 # Protein_GI_number: 15674924 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases # Organism: Streptococcus pyogenes M1 GAS # 113 571 3 475 484 263 38.0 9e-70 MKKSILFKKLGIILLISQTLVGVPMLAQESILETTVQTETESVTTETSQTVANLESETTS QTVMQEKESSSAIAESSSGNVVAVTTETTNEIQNSDTDEKAVSAESVFSEADYKQATALE LATLVREKKVTSEELVKIALAITKRENPTLNAVITLREEAALTEAKALQDTGQPFLGVPL LLKGLGQSLKGESNTNGFGFLQDQVAGGTSTFVKALQNAGFIIIGQTNYPELGWKNISDS KLYGVSVNPWNPNHYSGGSSGGAGASVAAAFVPIASGSDAGGSIRIPASWTGTVGLKPSR GVIIGNSNSAKGQTVHFGLSRTVADTNALFETLLTKKDLPAGHLSQAQPIAYTTESPAGT PISAEAKEAVAEAVAFLKDQGYTLVEVKHPVDGERLMKNYYTVAAGSAGIADFMVRQKLK RPLERNDVELLTWALFQTGKNITSEETTAAWTDIALQAQAMDEFYQQYPILLTPTTAATA PSIDNPLLKPEHAAQMEKIDQLSPAEQKQLIYDQWLTSFTYTPFTQQANLFGHPALSVPT YVSKEGLPLGIQFNSALNEDRTLLQLGALFENNHKINQPHVEEPDKDKEPNASGEPDKDK EPDASGKPEKDKDSDASGKPEKDKETKTSEGPIEGKDQNQNQNQNQ Prediction of potential genes in microbial genomes Time: Sun May 15 12:24:14 2011 Seq name: gi|284795537|gb|ADDQ01000012.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont32.2, whole genome shotgun sequence Length of sequence - 22453 bp Number of predicted genes - 19, with homology - 19 Number of transcription units - 12, operones - 5 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 287 257 ## EF1033 6-aminohexanoate-cyclic-dimer hydrolase, putative + Term 293 - 345 13.4 + Prom 296 - 355 6.6 2 2 Op 1 . + CDS 379 - 1308 718 ## COG3173 Predicted aminoglycoside phosphotransferase 3 2 Op 2 . + CDS 1351 - 2004 760 ## EF1035 putative lipoprotein + Prom 2018 - 2077 3.4 4 3 Tu 1 . + CDS 2123 - 2524 544 ## COG0105 Nucleoside diphosphate kinase + Term 2530 - 2587 15.1 + Prom 2539 - 2598 9.4 5 4 Tu 1 . + CDS 2684 - 4294 1594 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase + Term 4300 - 4344 9.1 + Prom 4327 - 4386 3.4 6 5 Tu 1 . + CDS 4437 - 5522 990 ## EF1038 putative lipoprotein + Term 5532 - 5576 10.1 - Term 5515 - 5569 17.1 7 6 Tu 1 . - CDS 5636 - 6439 966 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 6527 - 6586 8.1 + Prom 6503 - 6562 3.1 8 7 Op 1 . + CDS 6591 - 7220 449 ## COG4330 Predicted membrane protein + Prom 7228 - 7287 11.2 9 7 Op 2 . + CDS 7373 - 8779 1704 ## COG2252 Permeases + Term 8868 - 8916 15.4 + Prom 8902 - 8961 5.2 10 8 Tu 1 . + CDS 8988 - 10184 941 ## COG0477 Permeases of the major facilitator superfamily + Term 10196 - 10251 3.1 - Term 10187 - 10238 10.5 11 9 Tu 1 . - CDS 10239 - 10424 265 ## EF1043 hypothetical protein + Prom 10284 - 10343 4.7 12 10 Op 1 3/0.000 + CDS 10542 - 13871 3082 ## COG0587 DNA polymerase III, alpha subunit + Prom 13902 - 13961 6.7 13 10 Op 2 12/0.000 + CDS 14044 - 15006 1343 ## COG0205 6-phosphofructokinase 14 10 Op 3 . + CDS 15071 - 16828 2247 ## COG0469 Pyruvate kinase + Term 16880 - 16925 8.3 + Prom 17121 - 17180 8.2 15 11 Op 1 20/0.000 + CDS 17201 - 17770 632 ## COG1399 Predicted metal-binding, possibly nucleic acid-binding protein 16 11 Op 2 . + CDS 17827 - 18006 322 ## PROTEIN SUPPORTED gi|29375627|ref|NP_814781.1| 50S ribosomal protein L32 + Term 18031 - 18081 12.2 + Prom 18096 - 18155 7.5 17 12 Op 1 2/0.000 + CDS 18211 - 19632 1826 ## COG0362 6-phosphogluconate dehydrogenase + Term 19643 - 19686 9.2 + Prom 19672 - 19731 3.4 18 12 Op 2 40/0.000 + CDS 19790 - 20476 870 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 19 12 Op 3 . + CDS 20487 - 21995 1300 ## COG0642 Signal transduction histidine kinase Predicted protein(s) >gi|284795537|gb|ADDQ01000012.1| GENE 1 3 - 287 257 94 aa, chain + ## HITS:1 COG:no KEGG:EF1033 NR:ns ## KEGG: EF1033 # Name: not_defined # Def: 6-aminohexanoate-cyclic-dimer hydrolase, putative # Organism: E.faecalis # Pathway: not_defined # 8 93 644 729 729 127 94.0 9e-29 NQNQNQNQNPDKAGKTTSESSLDNSLKSSANQGTKSTGSTHAFSDKNMIGKKEQLPKKVL PKAGVEVPSTFWIVLGGAFLVTSGTIYIRKTRKR >gi|284795537|gb|ADDQ01000012.1| GENE 2 379 - 1308 718 309 aa, chain + ## HITS:1 COG:MA3040 KEGG:ns NR:ns ## COG: MA3040 COG3173 # Protein_GI_number: 20091858 # Func_class: R General function prediction only # Function: Predicted aminoglycoside phosphotransferase # Organism: Methanosarcina acetivorans str.C2A # 1 299 2 298 304 187 34.0 2e-47 MRAFEKIPAFQQWQKVEAIHRGWSTDLKFKVTKNQETFLLRIFQQEELLAKQQEYQFIKK VAALGFPSSKPFLCAPIPESEQGYMLLTYLEGEDLSDVLPALSPKRQLNLGIEAGRYLNK IHKLLLPERISQREIARNLYEKKQSQLNKYKESQFCMPYQQPIISYLEKQLPLLQQRPVV YQHGDFHAGNFIYLPTRQVGVIDFNRWDFGDPYEEFYKLQFFSRNVSPLFAYGQLQGYFA GKVPTLFWQFQKLYTFHAGLYSLVWALSFGEKEIRTMEQQYQQLLEDYNCGELLVPKWFS TIQRKGLRF >gi|284795537|gb|ADDQ01000012.1| GENE 3 1351 - 2004 760 217 aa, chain + ## HITS:1 COG:no KEGG:EF1035 NR:ns ## KEGG: EF1035 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 217 1 217 217 362 99.0 7e-99 MKLNGIIMIVVVGSVLSSCGWQKSKEESQKVQTVQTNNVNAEETRAISATEVSQTTALEL EQTTQTQELTELVTEEGTIWNQQKAKQLGQYMETWGQERNQNYQAYQPGHSVAFYTIQVP DDLLSYEPKIQPAIGNNPIWLNWSETGSEGGYCLVAVYSDSATQVAQKHVYLFTLVNGEA KVYVSKEQPVEEQPYLFLKETSNTELKEQFTNLVNNL >gi|284795537|gb|ADDQ01000012.1| GENE 4 2123 - 2524 544 133 aa, chain + ## HITS:1 COG:BH1654 KEGG:ns NR:ns ## COG: BH1654 COG0105 # Protein_GI_number: 15614217 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside diphosphate kinase # Organism: Bacillus halodurans # 3 132 2 131 147 133 50.0 6e-32 MKETSLVIIKPDGVERKLVGKIIQRFEDKGIDLLHLKFERLTVETVKEHYEHLKDELFFP ELLAYMTSGPVVVMVVVGDNVVKKVRKLVGATNPLDAESGTLRADYGLSVTKNLIHASDS VQSAKIEMQRFFG >gi|284795537|gb|ADDQ01000012.1| GENE 5 2684 - 4294 1594 536 aa, chain + ## HITS:1 COG:MJ0001 KEGG:ns NR:ns ## COG: MJ0001 COG0436 # Protein_GI_number: 15668173 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Methanococcus jannaschii # 186 349 103 251 375 61 27.0 4e-09 MITSDELTENLSPFELSLFLEKKLHEENHNLETLLNAGRGNPNWTAPTPREAFFLLGQFA TKETLREGSEQTAGMIQPSFGRTQRFLNFLAENPSKGATFLQEIWTAEHNYFGMDKEMWL DAMLDYVIGDNYPNPVRCLKACEQPIKAYLNQELFSSEAQPFDIFAVEGGTAGICYLFDT LANNYLLEKGDRIALLLPTFAPYLEIPELPRYDFDVVKIKAEQMIIDGKTTYQYSNKEID KLKDPSIKAVFVVNPSNPTANAMGKPTIEQIKQIVAVDNPKLMILTDDVYGTFVPAFRSL FTELPYNTTCIYSYSKYFGATGWRVGTIAVSQENIFDQLLKELPVARKMELQARYATLNA DTSQINFISRLVADSRDIALNHAAGLSSIQQAMMALFSLYALLKDGQAYKDEVMDICHTR EKLLFRTLGIEEPLASLNTAYYCEINFRDWTEKRYGPEFSSYLTKSWTITKVLTSLAEKE KLMLLKADAFGSDKWSVRISLANLATNQYSEVGKRMIRLSEHIKEEWLRQKRQAIK >gi|284795537|gb|ADDQ01000012.1| GENE 6 4437 - 5522 990 361 aa, chain + ## HITS:1 COG:no KEGG:EF1038 NR:ns ## KEGG: EF1038 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 361 1 361 361 644 99.0 0 MKHIKGMLVFIGLFILVGCAPDQESTKQTTSGPQETKQVKQVTVTNQTTSAVEKQAPTKN DELIANQLTFDSHEYTYEVVTGATQTTFGTTPPAKYTPEEKKKKMFWSNQPPLGLMTGNY YKNEGVFTGGNYGIVEIITEPETQRILNVEFTEFASDPYYDTRYSGVNKRLSDYPEFQAS NTRTDDTLVTVVNGITYVEKQMRDENRVTGNFYTVRGSSTSAREGLMPLAAEMDTWLKEP SKETYIGYAEDLGNGLIARLQVITEEQKIKHVSYDEYFSDEQEKITETALRPFYRQSKYY SPGYNKQTNNSFIHFVDALTKAITTQQTLSVNEEQELQHPSFMTYQRLAEKISTFQNSLK E >gi|284795537|gb|ADDQ01000012.1| GENE 7 5636 - 6439 966 267 aa, chain - ## HITS:1 COG:SP0286 KEGG:ns NR:ns ## COG: SP0286 COG0561 # Protein_GI_number: 15900220 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Streptococcus pneumoniae TIGR4 # 2 263 3 267 270 209 40.0 4e-54 MKKLIAIDLDGTTLNAQSLISPKTEQTLKKAIDNGHYVSIATGRPYRMSHQFYQQLGLTT PMVNFNGALVHIPEKKWDLESEANIERDLVFDILAQKKELQLDFVAAENKETFYIDTLDG FDPKFFASKATLDNLLTAKNLRTNPTSMMVRTTPNQAEKVADTLTKQYGDYIDVRTWGGP MPILEMVAKGIQKAHGVDQVANFLSVKPADIIAFGDEHNDEEMLSYAGWGVAMNNATDKI KSVANDVTEKTNDQDGLADYLENYLDL >gi|284795537|gb|ADDQ01000012.1| GENE 8 6591 - 7220 449 209 aa, chain + ## HITS:1 COG:lin2252 KEGG:ns NR:ns ## COG: lin2252 COG4330 # Protein_GI_number: 16801316 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 9 185 9 191 213 80 33.0 2e-15 MKNSRNYLRVITLIYCIYMWLFATHFHFMALNVLLAYIPIELSYLLNAEKRKRDWLIGFA WLIFYPNAPYLFTDFFHLETLSIYRGFNTIFANQIGDWWAFVCLTSGIVIYGLLGMKTVT TVSQKLQSYCDYRTIVVFQASLHFLSALAIYVGRFDRLHSVYLFMSPIETVKIIFFDWSL QKLMFILLMMFLQMLLFGLIQLLGKEEAM >gi|284795537|gb|ADDQ01000012.1| GENE 9 7373 - 8779 1704 468 aa, chain + ## HITS:1 COG:SPy1736 KEGG:ns NR:ns ## COG: SPy1736 COG2252 # Protein_GI_number: 15675585 # Func_class: R General function prediction only # Function: Permeases # Organism: Streptococcus pyogenes M1 GAS # 1 468 1 486 486 503 66.0 1e-142 MNTFFKLKENKTTVSTEIMAGVTTFFAMSYILFVNPSILSETGMPFQAVFLATIIASIIG TLIMGLFANVPYAQAPGMGLNAFFTFTVVFGMGYTWQQALAMVFICGLINILITVTKIRK MIIKAIPESLQHAIGGGIGIFVAYVGLKNAGLLSFTVQAEPQNGVVNGSSIVPALGNFDN PAIILAVIGLVLTTILVVTNVRGAILIGIVVTTLVAIPMGVVDTASVDWHANSLGNSFKE LGTTFGAAFGAEGLQSLFSDSSKIPQVLMTIIAFSLSDTFDTIGTFIGTGRRTGIFSKED ELALEDSKGFSTKMDKALFADAIATSIGAIFGTSNTTTYVESAAGIGAGGRTGLTSVVVA ILFALSSLFSPLIAIVPAQATAPALILVGIMMLASFKDINWTDLEDAIPAFFASIFMGLC YSISYGIAAGFIFYAVVKVVKGKAKEVSPIIWVIDALFILNFVILAIL >gi|284795537|gb|ADDQ01000012.1| GENE 10 8988 - 10184 941 398 aa, chain + ## HITS:1 COG:L60571 KEGG:ns NR:ns ## COG: L60571 COG0477 # Protein_GI_number: 15672648 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 3 397 7 401 405 431 57.0 1e-120 MKIKWKQNLLVAWIGCFFTGASISLVMPFIPVYVEQLGTPKSQVELFSGLAISVTAFAAA IVAPIWGNLADRKGRKIMMIRAAAGMTITMGALAFVPNVYWLLIMRFMNGILSGYIPNAT AMIASQAPKEKNGWALGTLSTGAIAGTLIAPSIGGALAQWFGMENVFIITGVILFITTLL TIFLVKEDFQPVEKKDLLTTKEIFSKMDHVSVLIGLFVTTLILQLGITSISPILTLYIRS LSGDTENVLFVSGLIVSIAGVSAIISSPTLGKIGDRIGNQKVLLGGLILSFICYIPMAFV QTPFQLGVLRFLLGFSTGALMPSINTLISKITPTEGVSRVYSYNQMCSNFGQVLGPMVGS TVAHGFGYSSVFLVTACFVLGNIGLSFFNFRKVLNKKL >gi|284795537|gb|ADDQ01000012.1| GENE 11 10239 - 10424 265 61 aa, chain - ## HITS:1 COG:no KEGG:EF1043 NR:ns ## KEGG: EF1043 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 61 1 61 61 100 98.0 1e-20 MRYLVVFFWTFALGQVVGYIGGALSGGSYDFKMTTILSLATAVIVLLIAHFAVPKETKPV K >gi|284795537|gb|ADDQ01000012.1| GENE 12 10542 - 13871 3082 1109 aa, chain + ## HITS:1 COG:lin1609 KEGG:ns NR:ns ## COG: lin1609 COG0587 # Protein_GI_number: 16800677 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Listeria innocua # 1 1109 1 1108 1108 874 44.0 0 MSFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQ PIIGLRLEYTPAEKEGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFYLAEHQSLLSDLF AVTLSAKGEVAQTFFEDEQQAVHAFQQLASYFDPQSLFVEHSFSMNQQRNPALFSFYQRE QLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQTPEIEGLDYLREAETTMEQMLQ IAGSEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDNQTAGSYLRSLCLEKLPERVPHLNE VYQKRLEKELTIIHNMGFDDYFLIVWDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDV DPIKYDLLFERFLNPERYTMPDIDLDIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAK MVLRDVARVFGLSQSEANRWSAAVPNKLKITLEEAYQESKRMQELVNFSPNNQLLYKTAV QLEGLPRHVSTHAAGVVISDENLLNLVPLQPGSNEILLTQFTMNDVEKIGLLKMDFLGLR NLSIIDDTLTAVKRVYNQTIRLNQIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLG PTSIEDIAAVNALYRPGPMQNIDVFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIM QVAAKMAGFSLGQADILRRAISKKKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERF ANYGFNRSHAFAYSFIGFQMAYLKVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTI LQPSINQSHYSFYLNQQQQILFGFSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDR KWLKVENIEPLIAIGAFDEIAPNRRQLAVGLESNIQSILLSGGSMDLLETLKPKEEEIAD YPLEERLEQEEQYLGVYLSGHPTEEFKKTRLAKQTQLVHELVENQPTKLLIYVKNIRTIR TKKGEQMAFVDGDDTTGSISLTLFPTVFRQLRQSVEKGQVYYVEGKVERSTYNQELQILV QRIEKAQQVETSISDETCFIRITKDVEQTDVFQKMKEVLSRHAGHIPVIVYFEKTGKKIV LNEENWVAHTSASQQQLAYVLGEQNVIFK >gi|284795537|gb|ADDQ01000012.1| GENE 13 14044 - 15006 1343 320 aa, chain + ## HITS:1 COG:lin1606 KEGG:ns NR:ns ## COG: lin1606 COG0205 # Protein_GI_number: 16800674 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphofructokinase # Organism: Listeria innocua # 1 314 1 313 319 439 71.0 1e-123 MKRIGILTSGGDAPGMNAAIRAVVRKSIFDGIEVYGINYGFAGLVAGDIRRLDVADVGDK IQRGGTFLYSARYPEFATEEGQLKGIEQLKKFGIEGLVVIGGDGSYHGAMALTKRGFPAV GIPGTIDNDIPGTDFTIGFDTAINTVLESIDRIRDTATSHVRTFVIEVMGRNAGDIALWS GVAGGADEIIIPEHDFDMKNVAKRIQEGRDRGKKHCLIILAEGVMGGNEFADKLSEYGDF HTRVSILGHVVRGGSPSARDRVLASKFGSYAVELLKEGKGGLCIGMLDNQVVAADIIDTL ENNKHKPDLSLYELNHEISF >gi|284795537|gb|ADDQ01000012.1| GENE 14 15071 - 16828 2247 585 aa, chain + ## HITS:1 COG:lin1605_1 KEGG:ns NR:ns ## COG: lin1605_1 COG0469 # Protein_GI_number: 16800673 # Func_class: G Carbohydrate transport and metabolism # Function: Pyruvate kinase # Organism: Listeria innocua # 1 475 1 475 475 683 77.0 0 MKKTKIVCTIGPASESVDMLVNLINAGMNVCRLNFSHGDYEEHGARIKNIREAVKITGKR VAILLDTKGPEIRTNDMENGAITMKIGDSVRISMTEVLGTNEKFSITYPELINDVNVGSH ILLDDGLIDLEVTDIDRDANEIVTVVKNEGVLKNKKGVNVPGVSVNLPGITEKDANDIRF GIGQGIDFIAASFVRRASDVLEITKILEEENATHIQIIPKIENQEGIDNIDEILKVSDGL MVARGDMGVEIPTEDVPVVQKALIKKCNALGKPVITATQMLDSMQRNPRPTRAEANDVAN AIYDGTDAVMLSGETAAGDYPLEAVQTMARIAVRTEETLVNQDSFALKLYSKTDMTEAIG QSVGHTARNLGIQTIVAATESGHTARMISKYRPKAHIVAITFSEQKARSLSLSWGVYATV ADKPSSTDEMFNLASKVSQEEGYASEGDLIIITAGVPVGEKGTTNLMKIQMIGSKLVQGQ GVGEEAIIAKAVVAGTAEEAVAKATEGAILVTKTTDKEYMPAIEKASALVVEEGGLTSHA AVVAIAQNIPVIVGAADATSLINNDEVITVDPRRGIVYRGATTAI >gi|284795537|gb|ADDQ01000012.1| GENE 15 17201 - 17770 632 189 aa, chain + ## HITS:1 COG:L39365 KEGG:ns NR:ns ## COG: L39365 COG1399 # Protein_GI_number: 15673577 # Func_class: R General function prediction only # Function: Predicted metal-binding, possibly nucleic acid-binding protein # Organism: Lactococcus lactis # 1 170 1 167 176 115 42.0 5e-26 MKWSLLELNKYKEEPLVFSETLHLKEELLQRDDTLLDVSPIKVEGLLAVNKSEYLLHYTI QVTVTVPSSRSLEPVALPMQITVDEVFMTKEQMDTRDERFAAEEIILLDKPTIDLDESVE DNILLSIPIQVLTEEEQNSQEMPSGNDWEVISEEAYLESKQKAAEQTVDPRLAKLSELLS DNAEEEDNS >gi|284795537|gb|ADDQ01000012.1| GENE 16 17827 - 18006 322 59 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375627|ref|NP_814781.1| 50S ribosomal protein L32 [Enterococcus faecalis V583] # 1 59 1 59 59 128 100 3e-29 MAVPARRTSKAKKAKRRTHYKLTIKGLNACSNCGEMKKSHHVCPACGHYDGKDVMSKEA >gi|284795537|gb|ADDQ01000012.1| GENE 17 18211 - 19632 1826 473 aa, chain + ## HITS:1 COG:SP0375 KEGG:ns NR:ns ## COG: SP0375 COG0362 # Protein_GI_number: 15900298 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconate dehydrogenase # Organism: Streptococcus pneumoniae TIGR4 # 1 473 1 474 474 790 80.0 0 MTKQQFGVVGMAVMGKNLALNIESRGYTVALYNRTGSKTTEVVEEHPDKNFQATYSIEEF VNAIEKPRRIMLMVKAGPATDATIQELLPHLDKGDILIDGGNTFFKDTMRRNEELANSGI NFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILEKISAKAEDGEPCVTYIGPNGAGH YVKMVHNGIEYGDMQLIAESYDLMKQILGLSVDEMAEIFKEWNEGELDSYLIEITADILT RKDDEGTDQPIVDVILDAAGNKGTGKWTSQSALDLGVPLPLITESVFARFISAYKEERVK ASGILSKPAAFNFAGDKKELIEKIREALYFSKLMSYAQGFAQLRAASEEYGWDLPFGEIA KIWRAGCIIRAQFLQKITDAYEKNPALENLLLDEYFVEITKKYQQAVREVVAIAVQAGVP VPTFSSAIAYYDSYRSDRLPANLIQAQRDYFGAHTYERTDKEGIYHYSWYNEE >gi|284795537|gb|ADDQ01000012.1| GENE 18 19790 - 20476 870 228 aa, chain + ## HITS:1 COG:lin1414 KEGG:ns NR:ns ## COG: lin1414 COG0745 # Protein_GI_number: 16800482 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 1 228 1 226 226 307 80.0 9e-84 MSNILIIEDEKNLARFVELELKHEGYTTEVHYNGRTGLEAALNNEWDAILLDLMLPELNG LEVCRRVRQVKNTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRID IEGDKNVAKQTTITYRDLTIEKENRVVRRNSEMIELTKREYELLLTLMENVNVVLARDVL LNKVWGYETEVETNVVDVYIRYLRNKIDVPGEESYIQTVRGTGYVMRS >gi|284795537|gb|ADDQ01000012.1| GENE 19 20487 - 21995 1300 502 aa, chain + ## HITS:1 COG:L0130 KEGG:ns NR:ns ## COG: L0130 COG0642 # Protein_GI_number: 15673575 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Lactococcus lactis # 2 491 11 488 491 332 39.0 1e-90 MKRTIKKELEGPSLTIKWAFASSFFIFVVFTIFAVITYKSSVSLIVAKEKENVEATIAEV TNRLANANENLTVTDVFDYLKTPSERDENYYNKHTAVEGSFMEMDSFISELGQPELYLSV YDTNQKLVFKTQNEYDKLLQLDRQLPVVRTVFDKTGFYSVEPIFSKETREKIGYIQAFYE LSSFYEIRNHLLLTLVVLEVISLIVSSVLGFILSSYFLKPLKVLRDTMDTIRKDPQSDVH MPEINTRDELADISEIFNEMLDRMRRYIEQQEQFVEDVSHELRTPVAIMEGHLNLLNRWG KDDPEILDESLKASLQEISRMKSLVQEMLDLSRAEQVDTQYANERTDAKQVVYQVFNNFQ LVYPEFHITLDDDLPTEVELKIYRNHFEQLLIILLDNAIKYSTDRKEVHISISRTMNEFE IAVQDFGEGITEEDLEKIFDRFYRVDKARARNKGGNGLGLSIAKQLVENYKGRIDAESVL HQGTIFRIFIPIAGIKEESNVQ Prediction of potential genes in microbial genomes Time: Sun May 15 12:24:27 2011 Seq name: gi|284795536|gb|ADDQ01000013.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont42.1, whole genome shotgun sequence Length of sequence - 1976 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 427 345 ## smi_1705 acetyl transferase 2 1 Op 2 . + CDS 428 - 1867 995 ## COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins Predicted protein(s) >gi|284795536|gb|ADDQ01000013.1| GENE 1 2 - 427 345 141 aa, chain + ## HITS:1 COG:no KEGG:smi_1705 NR:ns ## KEGG: smi_1705 # Name: not_defined # Def: acetyl transferase # Organism: S.mitis_B6 # Pathway: not_defined # 12 141 47 176 176 260 100.0 9e-69 ILHRSLDLTEFMEEVLIDDNMVFDIDNLKGFLNDTSSFGFIAKENNKIIGFAYCYTLLRP DGKTMFYLHSIGMLPNYQDKGYGSKLLSFIKEYSKEIGCSEMFLITDKGNPRACHVYEKL GGKNDYKDEIVYVYDYEKGDK >gi|284795536|gb|ADDQ01000013.1| GENE 2 428 - 1867 995 479 aa, chain + ## HITS:1 COG:mll5006 KEGG:ns NR:ns ## COG: mll5006 COG1670 # Protein_GI_number: 13474178 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Acetyltransferases, including N-acetylases of ribosomal proteins # Organism: Mesorhizobium loti # 11 157 12 150 173 63 31.0 6e-10 MNIVENEICIRTLIDDDFPLMLKWLTDERVLEFYGGRDKKYKLESLKKHYTEPWEDEVFR VIIEYNNVPIGYGQIYKMYDELYTDYHYPKTDEIVYGMDQFIGEPNYWSKGIGTRYIKLI FEFLKKERNANAVILDPHKNNPRAIRAYQKSGFRIIEDLPEHELHEGKKEDCYLMEYRYD DNATNVKAMKYLIEHYFDNFKVDSIEIIGSGYDSVAYLVNNEYIFKTKFSTNKKKGYAKE KAIYNFLNTNLETNVKIPNIEYSYISDELSILGYKEIKGTFLTPEIYSTMSEEEQNLLKR DIASFLRQMHGLDYTDISECTIDNKQNVLEEYILLRETIYNDLTDIEKDYIESFMERLNA TTVFEGKKCLCHNDFSCNHLLLDGNNRLTGIIDFGDSGIIDEYCDFIYLLEDSEEEIGTN FGEDILRMYGNIDIEKAKEYQDIVEEYYPIETIVYGIKNIKQEFIENGRKEIYKRTYKD Prediction of potential genes in microbial genomes Time: Sun May 15 12:24:36 2011 Seq name: gi|284795535|gb|ADDQ01000014.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont43.1, whole genome shotgun sequence Length of sequence - 20804 bp Number of predicted genes - 21, with homology - 18 Number of transcription units - 15, operones - 5 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 46 - 1209 1303 ## COG0153 Galactokinase - Prom 1383 - 1442 5.9 + Prom 1197 - 1256 6.1 2 2 Tu 1 . + CDS 1429 - 2466 477 ## PROTEIN SUPPORTED gi|15900011|ref|NP_344615.1| aldose 1-epimerase + Term 2477 - 2541 11.3 + Prom 2516 - 2575 4.2 3 3 Tu 1 . + CDS 2597 - 2743 235 ## EF1067 hypothetical protein + Term 2747 - 2807 11.7 + Prom 2784 - 2843 6.4 4 4 Tu 1 . + CDS 2888 - 3502 620 ## COG0110 Acetyltransferase (isoleucine patch superfamily) + Term 3507 - 3550 1.6 - Term 3494 - 3538 6.1 5 5 Op 1 . - CDS 3548 - 3970 477 ## COG2764 Uncharacterized protein conserved in bacteria 6 5 Op 2 . - CDS 4046 - 4525 465 ## PROTEIN SUPPORTED gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 - Prom 4547 - 4606 4.0 7 6 Op 1 1/0.000 - CDS 4760 - 5977 1320 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 8 6 Op 2 . - CDS 5974 - 7197 1175 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 9 6 Op 3 . - CDS 7225 - 8886 1807 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 9004 - 9063 6.7 + Prom 9176 - 9235 6.9 10 7 Tu 1 . + CDS 9267 - 10937 1705 ## COG2508 Regulator of polyketide synthase expression + Term 10942 - 10982 2.1 - Term 10919 - 10977 10.7 11 8 Op 1 . - CDS 10992 - 11417 626 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins 12 8 Op 2 . - CDS 11417 - 13015 1575 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family - Prom 13095 - 13154 7.9 + Prom 13032 - 13091 6.2 13 9 Tu 1 . + CDS 13125 - 13220 62 ## + Term 13230 - 13296 16.0 - Term 13227 - 13275 10.2 14 10 Tu 1 . - CDS 13284 - 13796 393 ## EF1055 tunicamycin resistance protein, putative - Prom 14022 - 14081 5.1 + Prom 14172 - 14231 5.1 15 11 Op 1 6/0.000 + CDS 14341 - 16098 1090 ## COG4986 ABC-type anion transport system, duplicated permease component + Prom 16107 - 16166 2.4 16 11 Op 2 . + CDS 16187 - 16966 319 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Prom 16973 - 17032 4.5 17 12 Tu 1 . + CDS 17261 - 17509 207 ## gi|256962355|ref|ZP_05566526.1| predicted protein + Term 17513 - 17562 15.8 - Term 17327 - 17359 0.1 18 13 Tu 1 . - CDS 17525 - 17620 100 ## - Prom 17839 - 17898 4.8 19 14 Op 1 . + CDS 17595 - 17693 78 ## 20 14 Op 2 . + CDS 17755 - 18966 916 ## COG3547 Transposase and inactivated derivatives + Prom 18988 - 19047 9.3 21 15 Tu 1 . + CDS 19127 - 20804 1250 ## COG3666 Transposase and inactivated derivatives Predicted protein(s) >gi|284795535|gb|ADDQ01000014.1| GENE 1 46 - 1209 1303 387 aa, chain - ## HITS:1 COG:SP1853 KEGG:ns NR:ns ## COG: SP1853 COG0153 # Protein_GI_number: 15901681 # Func_class: G Carbohydrate transport and metabolism # Function: Galactokinase # Organism: Streptococcus pneumoniae TIGR4 # 3 386 8 391 392 458 61.0 1e-129 MEELLMNRFVEIFGEKGTACYFAPGRINLIGEHTDYNGGHVFPAAITLGTFGVARKRDDQ KIRMFSDNFKEVGLIEFSLEDLTYSDSDDWANYPKGVLNYLIESGHNIDSGLDVLFYGTI PNGAGLSSSASIELLMGTICNDLYALHCPMLELVQIGKKVENEFIGVNSGIMDQFAVGMG EKDQAILLDTNNMHYEMVPAKLGEYTIVIMNTNKRRELADSKYNERRAECEEAVRLLQKE LSIEFLGELDSETFEQYQALIGDPALIKRARHAVTENERTLLAKQALTEGDLEEFGLLLN ASHRSLKEDYEVTGIELDTLVACAQEQPGVLGARMTGAGFGGCSIALVPKQNIDAFIEAV GQSYQDKIGYAADFYPASIDDGARKLF >gi|284795535|gb|ADDQ01000014.1| GENE 2 1429 - 2466 477 345 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900011|ref|NP_344615.1| aldose 1-epimerase [Streptococcus pneumoniae TIGR4] # 9 344 14 343 345 188 33 3e-47 MTISTESFGQGMLLYTLTNKNGVTLKATDFGARIVALDVPLTKNESRSLVLGFPSADEYL SKDLYFGATIGRTAGRIADGSFELAGKTYQTMINTPTQTTLHGGTPGFESKKWHSEIQEA QANPSVKFWLESPAGENGFPGNLTVSVTYTLTEENEWQIEYQATTDEQTLFNPTNHVYFN LTGNPTIPIDAHELQINAQKFVPLDERVLPLGELASVDQTAFDLQKPKKLAEVFSSNDEQ IQKMNGFDHPFILTNHDLINPDVILKSPTKDITLEMFTDQPSVVIFSANFADSGPDIQGQ KLVNHGALTFETQVCPGAERFPLFGSITLSPEQEFHSTTRFKLIY >gi|284795535|gb|ADDQ01000014.1| GENE 3 2597 - 2743 235 48 aa, chain + ## HITS:1 COG:no KEGG:EF1067 NR:ns ## KEGG: EF1067 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 48 20 67 67 91 100.0 8e-18 MYAIKFFHGYLTADGKRTRDKSGCLVYHSEKEAQKLADKIGGRVKKIG >gi|284795535|gb|ADDQ01000014.1| GENE 4 2888 - 3502 620 204 aa, chain + ## HITS:1 COG:L1734467 KEGG:ns NR:ns ## COG: L1734467 COG0110 # Protein_GI_number: 15673662 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Lactococcus lactis # 2 187 8 193 203 208 51.0 5e-54 MQMLKGELYYAPTILPENKSTKGKVLAQKINQLPIDNVKEIVALEKELLGKTGNELYITP PLHVDYGRHIEVGENFYANIDCIFLDVNKIIFGDNVMVGPRASFYTAGHPIDPTIRTAEL EFGTPIIVEDNVWIGGSATILPGVTIGKNAIVAAGAVVTKDVPANTIVGGNPAKVIRKID ENDQQFWTEKQRQYQIAKKQFFHE >gi|284795535|gb|ADDQ01000014.1| GENE 5 3548 - 3970 477 140 aa, chain - ## HITS:1 COG:lin1207 KEGG:ns NR:ns ## COG: lin1207 COG2764 # Protein_GI_number: 16800276 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 2 135 3 133 135 142 50.0 2e-34 MLELYINFKGEAKEAIAFYEDVFDTKCQNLMTFGEAPEDPEHPINDEMKDLVMNASIIIE GTYVMISDVPDMFGFEVTEGNNLSLVVSTDDDEKIDRLFKRLSEGGTVTMPLSETFWSKK YGSLKDQFGIHWMFNYYEED >gi|284795535|gb|ADDQ01000014.1| GENE 6 4046 - 4525 465 159 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 [Streptococcus pneumoniae R6] # 6 157 3 154 165 183 59 7e-46 MTEQTRENKKAAYELCLQQLSGLLEIETDAIANLANSSALIAQTLPDTVFAGYYLYKDEE LVLGPFQGKVSCTRIKMGKGVCGESAEKQATLIVDNVKTHANYISCDSAAMSEIVVPMVK NHQLVGVLDIDSGVTNSYDAVDQLYLEKFVTLLLEKSDF >gi|284795535|gb|ADDQ01000014.1| GENE 7 4760 - 5977 1320 405 aa, chain - ## HITS:1 COG:yahJ KEGG:ns NR:ns ## COG: yahJ COG0402 # Protein_GI_number: 16128309 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Escherichia coli K12 # 7 405 55 454 460 229 33.0 8e-60 MTASIVYLNNVRLETGFAKDHHELTYTKTSRYTLAIQEGKIQAIIPQNQVTEKQQGTDLN GQLAIPAFQESHNHLDKTYLSLGWRASQPVKNLKERLADEASELKLLAPSTEQRATAMIE KLIGYGASYIRTHVNIDPYVELENFWGVKRALEKYAHVIDYDIVVFPQHGLLKNPQTVLL MKEALKNGGTMVGGLDPAGIDYAIEESLETIFDLAEEFQVGIDIHLHDTGEVGVYTIDKF LDILEERKFTQRTAISHAFALLDVRPAEKEKLYQRLATHQTAIMSTIPYDPRYLLPPIDV LRQAGVSVHLGSDGFFDSWSSNVSGDLFEKLRNFCEMTGKITEEQLTQAYVHGCGKEAPF SFEEERLWFTEGDEANFIFTEAASTAEVIARKPQKRKIMLKGQWV >gi|284795535|gb|ADDQ01000014.1| GENE 8 5974 - 7197 1175 407 aa, chain - ## HITS:1 COG:yahJ KEGG:ns NR:ns ## COG: yahJ COG0402 # Protein_GI_number: 16128309 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Escherichia coli K12 # 3 398 56 454 460 291 39.0 1e-78 MLLKNCKLETGFSTVNQRIVATETASYDIRIENEVCTAVAPQLRPLENETVIDVNQQLVL PALREMHIHIDKTYFGGPWKACRPLTKGILTRIEEETWLLPEQLPTSLERACQVIEQYIQ QGHYHIRSHCNVDPSIGTKHIEITKEAFSRYEQYITHEIVAFPQHGLLRSQVEPLMREAL RMGATHVGGVDPALVDRHVDHSIAKIFELATTFNKKIDVHLHARDTLGLYEFNKFVDYTE QAKMFGKVTLSHALALGSLEEAAIRDIAQKFIETGIDLTSTVPIGMPTMPIPTLVEQGVK ISVAHDSLTDHWSPFGSGNTIEKLNTAAQRFKISDEYRLNRLWGLASNFVTPLDPNGQRI WPNVGDSADFLLFNAESTAHVIARQQPIQQLILKGQLVEAVQKGERE >gi|284795535|gb|ADDQ01000014.1| GENE 9 7225 - 8886 1807 553 aa, chain - ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 18 552 22 557 559 403 39.0 1e-112 MKKLKMLGCVGLLLALTACQAGTGNSADSNKAAEQKIAISSEAAISTMEPHTAGDTTSTL VMNQVYEGLYVLGKEDELELGVAAEEPAISEDETVYTFKIREDAKWSNDDPVTANDFVYA WKQVASPKSGSIHQALFFDVIKNAKEIALEGADVNTLGVKALDDKTLEITLERPTPYLKS LLSFPVLFPQNEKYIKEQGDKYATDAEHLIYNGPFKLKEWDNASSDDWTYEKNDTYWDAE KVKLSEAKVSVIKSPTTAVNLFDSNELDVVNKLSGEFIPGYVDNPAFLSIPQFVTYFLKM NSVRDGKENPALANNNIRKALAQAFDKESFVKEVLQDQSTATDQVIPPGQTIAPDGTDFT KLAAKKNNYLTYDTAKAKEFWEKGKKEIGLDKIKLEFLTDDTDSAKKAAEFFQFQLEENL DGLEVNVTQVPFTIRVDRDQTRDYDLELSGWGTDYRDPLTVMRIFTSDSTLGGVTFKSDT YDQLIQETRTTHAADQEARLNDFAQAQDILVNQETVLAPIYNRSISVLANQKIKDLYWHS FGPTYSLKWAYVN >gi|284795535|gb|ADDQ01000014.1| GENE 10 9267 - 10937 1705 556 aa, chain + ## HITS:1 COG:BS_yunI KEGG:ns NR:ns ## COG: BS_yunI COG2508 # Protein_GI_number: 16080295 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Bacillus subtilis # 2 552 1 528 531 149 22.0 2e-35 MMTVNDLLHAEELPGLTLLTHETNLDAPILQANILENPDAFDWLTPGEILLTTGYIFKDQ PCLQKRLIQELANMNCAALGFKVQRYFNEVPQEMIQLANDVGLPILSIPYNYNFSQIISL VNRRVNQPDETISQHSVHMHNKFYTIIKAGGKSTQLLEVLSAAIQAPVMLLDERFQIMNH FDLPDAPTRITSILNNATLKKQFETALKAQNNELLLFYKEPLTVEFSLANHQLSLRILPI KKKNLSLSYLVIWQTTKKLQTIDLLSVEVCAHYLLPQLQLESSENLTTRQKIGALFQDLI QEKNTNPQAWQEFSNYLQLNEKDTFSLLLVAIEQLEQLFNPTIQMNSIGHQLNHILEGYR QKITAFPTQTGFILLLENPAQEEATYLAQTTHLAKNLLEQLMKLNPKLSFKLAIGPTVKK ITNLCDSYKLAQETFHLAQASQELQQRTILNYDDLFFYRLMIETLTKQAKQKIYQRLIEP LEKEDQKHESSLLETINTYFQSNKNISLTATNMYVHRNTIIYRLKKIEEILHLTLEFPDS SLQLSLAVYLYKQKLL >gi|284795535|gb|ADDQ01000014.1| GENE 11 10992 - 11417 626 141 aa, chain - ## HITS:1 COG:L103195 KEGG:ns NR:ns ## COG: L103195 COG0589 # Protein_GI_number: 15674218 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Lactococcus lactis # 2 141 4 144 145 64 26.0 5e-11 MKFSKIMVGVEESPDALKAFHYAIQKAKEEQAELVIVSILEEKEINVYQSLDKNYWQEQL AKLEKQTEKYQQEALANGIDKVSVIVNEGNPGELIINKLIPLNKPDLLIIGSKSTSKLKS FFGSQAAYMARYAPISVMIIR >gi|284795535|gb|ADDQ01000014.1| GENE 12 11417 - 13015 1575 532 aa, chain - ## HITS:1 COG:L91569 KEGG:ns NR:ns ## COG: L91569 COG1914 # Protein_GI_number: 15673064 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Lactococcus lactis # 3 310 2 306 314 447 77.0 1e-125 MKNSEEHEPKQRHHLIEYANGPSLEEINGTIDVPKNMSFWKTLFAYSGPGALVAVGYMDP GNWSTSITGGQNFQYLLMSIILISSLIAMLLQYMAAKLGIVSQMDLAQAIRARTSKTLGI VLWILTELAIMATDIAEVIGGAIALYLLFHIPLGLAVFITVFDVLLLLLLTKIGFRKIEA IVVALIVVIFVIFAYQVALSNPVWGDVIKGLVPSAEAFSTSHAVNGQTPLTGALGIIGAT VMPHNLYLHSSVVQSRKIDRKDKTDIQRALRFSTWDSNIQLTMAFFVNSLLLIMGVAVFK SGSVKDPSFFGLFDALSNPAVMSNSILAHIAGSGILSILFAVALLASGQNSTITGTLTGQ IIMEGFIHMRVPIWLRRMVTRLLSVIPVLICVLMTSGKSTVEEHIAINNLMNNSQVFLAF ALPFSMLPLLMFTDSRVEMGEHFKNSWLIKLLGWVSVIGLIYLNMKGLPDQIEGFFGDNP TASQITLADNIAYVIIALVILLLVWTVVELYKGDKRYAQQLAAMEQQVEEVK >gi|284795535|gb|ADDQ01000014.1| GENE 13 13125 - 13220 62 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQDLKENFDSVKIDCRKCAVLKFEEIRVAGS >gi|284795535|gb|ADDQ01000014.1| GENE 14 13284 - 13796 393 170 aa, chain - ## HITS:1 COG:no KEGG:EF1055 NR:ns ## KEGG: EF1055 # Name: not_defined # Def: tunicamycin resistance protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 170 1 170 170 325 96.0 4e-88 MIIWLNGAFGAGKTTIAHELQQKLPNAIIYDPEIIGSALMELIPEEMKENDFQEYQEWRC WNAHLLKRMSKESGRPIIVPMTLYKKEYEEELIGYLRRAGIDVYHFLLAVEKEEILQRLL KRNDGTFEWGKNKLPEVLEGFRQVKFTEIFRNHSADTIEIVASILNRITE >gi|284795535|gb|ADDQ01000014.1| GENE 15 14341 - 16098 1090 585 aa, chain + ## HITS:1 COG:XF0411 KEGG:ns NR:ns ## COG: XF0411 COG4986 # Protein_GI_number: 15837013 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type anion transport system, duplicated permease component # Organism: Xylella fastidiosa 9a5c # 64 583 62 581 584 300 35.0 5e-81 MKAVTASSKKNTLLAKSIGNLTLLIILGIFIFIIVFSWLKMNRPLHTLPSEEFLATPSKT DDFLSPSNLFYFSIRTMFRMIVGMAWSFLFSFVFGILAVKYKTARRVILPLVNFLESVPL LGFLTFTTAWLLGLFPGNVMGAEAVAIFAIFTGQAWNIMLTLYQIMEVIPSDLVNVTDQF KYNAWEKFWRLEFVYSIPGLLWNVIISQTAAWFALVASEQASVAFPKETNLYLPGIGSYI QVALNRADFKSCLWAVFALLINVVILNFLVFQPLVRATYYFKYETDVESTTPPKSIIYHL LKKATLTKYFSKAFVKFSHFWIYDLPKVWYFFKLDYLYRLLAKLRHFFKTLWYVSLTIIG VYCSIKLYHFLPHQDFSMIPRLTLYTTLRVTLAMVVAGIIFTPLAIWVANDNRRLSIVQP IGQILGSIPSNVYTPFIVLIISMGFNKLEWWILPLIMVGCQWYFFFNVIAGYLAIPDDIR DVTKLFKLSKWQWWTKFLIPSILPYLITAIINAAGAAWNADIAAESIQWGKKSIDVTGLG QYIAANDGVKDKSALGTLAMCFVVGLCIAFVWQPLYRAAKQKFHY >gi|284795535|gb|ADDQ01000014.1| GENE 16 16187 - 16966 319 259 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 6 217 1 212 245 127 34 6e-29 MENKELLSIKSVYKEFEIEGHSEHLKVLENIDLTVKTNEFLSIIGQSGTGKSTLLRSIAG LLRTTRGEITFEDKIINEPDANIGMVFQHFALFPWLTVEKNISFGLENRKEISREQINKR VSNLIEMIGLTGFEKAYPRELSGGMKQRVGFARALAIEPSLLLLDEPFSALDIITASQLS NDLLEIWLNNQIATKSIVMITHDVQQAVQLSDRVVLMDANPGRIAKIYSIDIPRNQRSPK TTIDIVEQITEEMVRRIHL >gi|284795535|gb|ADDQ01000014.1| GENE 17 17261 - 17509 207 82 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256962355|ref|ZP_05566526.1| ## NR: gi|256962355|ref|ZP_05566526.1| predicted protein [Enterococcus faecalis Merz96] # 1 82 1 82 82 135 100.0 9e-31 MTTMLAIIGTVAIITVQVIEYNMTEIHIPTAGTFNDDDAEPPHSSVILVFIRTILITLSL NFPSHFLRWFFYVFEKIINKTY >gi|284795535|gb|ADDQ01000014.1| GENE 18 17525 - 17620 100 31 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGLEVQEIMVGLPFTYNYTLKRAIEGKFIRR >gi|284795535|gb|ADDQ01000014.1| GENE 19 17595 - 17693 78 32 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MISWTSSPKQKMVSFTVILKSGLSMLGLRARV >gi|284795535|gb|ADDQ01000014.1| GENE 20 17755 - 18966 916 403 aa, chain + ## HITS:1 COG:SPy0732 KEGG:ns NR:ns ## COG: SPy0732 COG3547 # Protein_GI_number: 15674786 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pyogenes M1 GAS # 194 376 4 189 196 129 38.0 1e-29 MYVLALDVSMGKSYAVIYHETTFLFEQEILHDKPYFCQLLQEIYALPERPQIVFEATGVY SRVIETFCQKNHFDYCLLNPLEAKRQLNSDLRSVKTDKRDAHRLAQTHSQFLRKQKQQSS EIYEQTRDLAHFYQQIESDIKHMRMHLHTALQLTFPELETLFTNRLSKLALNLVELFPHP AYLVGLSQTKVKNLLKKNTDKKISDQKALAKAQTLLSLAQNSYPAESGQSISVQKVVYYA QQLKQLLTTKEQLAAQLIEAAKQTEEFDLYQSIPGIGELSAGLIIGELGDIRRFSSHKQL NAFVGVDTRRYQSGKYIAQEHMNKHGNPKARKNLYFIMMNMIRQQAAAPNHIVDYYYKLK TQPSPKKHKVALVACINKLLKCLHSMVRHSSTYDYSYTASNDQ >gi|284795535|gb|ADDQ01000014.1| GENE 21 19127 - 20804 1250 559 aa, chain + ## HITS:1 COG:BH0682 KEGG:ns NR:ns ## COG: BH0682 COG3666 # Protein_GI_number: 15613245 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Bacillus halodurans # 1 519 1 516 522 506 54.0 1e-143 MFKNYTINQTTLPLDMEQYIPETDVAFAVNALVEAMPQTLFLKLEEQLGRPAYHPKMMLK IILYAYTQRVFSGRKIEFLLDDSYRMRWLANHEQVSYRTINRFRSQETTAHLLAEAFVLF RRQLITNQVIDNEALFIDGTKIEADANKFSFVWRKATNRYEAALDKQSNEFYQTLYKEEI LPSLKEENQSDRLTSTQLEEIAQHLETELVATEEQLQKEKKKEKQSQLKKKRRTYKKYLR KIQADYLPRKQRYETYNRLFQERNSFSKTDTDATFMRMKDDYMRNGQLKPGYNLQIATEN QYVLAYDLFPNPTDTKTLHPFLDSFLEQHSELPEYIVADAGYGSEENYTYINDVLHKTPL ITYASYHKENKKTYRNSPFMVDNWRYLEEEDTYICPAQRAVPFKQYSRRKDKGGFVRDFK IYECENCRDCPVRSQCTKAKSEQNRQILVNNTWRYFKAECKKKLLEEKTGSIYRKRKIDV EPVFGHLKAHLAFQRFHLRGKQGAKIDIGLALMALNLRKLGKYMEKKQRKNEKPSPILKV IIKIGLGFFYDFSQLKSLK Prediction of potential genes in microbial genomes Time: Sun May 15 12:25:01 2011 Seq name: gi|284795534|gb|ADDQ01000015.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont44.1, whole genome shotgun sequence Length of sequence - 14734 bp Number of predicted genes - 19, with homology - 19 Number of transcription units - 9, operones - 7 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 56 - 96 -0.8 1 1 Tu 1 . - CDS 234 - 521 81 ## CD1870 putative conjugative transposon mobilization protein - Prom 559 - 618 8.1 + Prom 594 - 653 8.3 2 2 Op 1 . + CDS 826 - 1176 255 ## CD1871 hypothetical protein + Prom 1212 - 1271 2.3 3 2 Op 2 . + CDS 1332 - 1817 189 ## EF1871 thioredoxin family protein 4 3 Op 1 36/0.000 + CDS 2725 - 4002 630 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 5 3 Op 2 36/0.000 + CDS 4009 - 4668 250 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 6 3 Op 3 . + CDS 4668 - 6044 920 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Term 6138 - 6187 6.1 - Term 6133 - 6168 3.5 7 4 Op 1 2/0.000 - CDS 6175 - 6795 292 ## COG3464 Transposase and inactivated derivatives 8 4 Op 2 . - CDS 6831 - 7085 123 ## COG3464 Transposase and inactivated derivatives 9 5 Tu 1 . - CDS 7217 - 7327 181 ## gi|69243909|ref|ZP_00602487.1| Transposase, IS204/IS1001/IS1096/IS1165 - Prom 7572 - 7631 7.8 + Prom 7531 - 7590 4.3 10 6 Op 1 40/0.000 + CDS 7615 - 8268 588 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Prom 8284 - 8343 11.1 11 6 Op 2 . + CDS 8406 - 9584 623 ## COG0642 Signal transduction histidine kinase 12 7 Op 1 . - CDS 9909 - 10862 487 ## COG3328 Transposase and inactivated derivatives - Term 10886 - 10910 -1.0 13 7 Op 2 . - CDS 10932 - 11078 278 ## EF1874 IS256 family transposase - Prom 11180 - 11239 9.5 + Prom 11211 - 11270 8.5 14 8 Op 1 1/0.333 + CDS 11331 - 12176 629 ## COG5495 Uncharacterized conserved protein 15 8 Op 2 19/0.000 + CDS 12188 - 13015 624 ## COG0413 Ketopantoate hydroxymethyltransferase 16 8 Op 3 12/0.000 + CDS 13030 - 13878 412 ## COG0414 Panthothenate synthetase 17 8 Op 4 . + CDS 13891 - 14286 328 ## COG0853 Aspartate 1-decarboxylase + Term 14437 - 14466 0.2 18 9 Op 1 11/0.000 - CDS 14439 - 14552 63 ## COG2801 Transposase and inactivated derivatives 19 9 Op 2 . - CDS 14556 - 14732 99 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|284795534|gb|ADDQ01000015.1| GENE 1 234 - 521 81 95 aa, chain - ## HITS:1 COG:no KEGG:CD1870 NR:ns ## KEGG: CD1870 # Name: not_defined # Def: putative conjugative transposon mobilization protein # Organism: C.difficile # Pathway: not_defined # 48 95 1 48 116 87 93.0 1e-16 MSKHSKCTDTYEKNDEAALWDLLLFLSIFNLLGCTLRPRNTFKGGLPIANRIRNERLEIK LTEEEKALFEEKRKLAKCKNMSHFIRKCVLEKEIY >gi|284795534|gb|ADDQ01000015.1| GENE 2 826 - 1176 255 116 aa, chain + ## HITS:1 COG:no KEGG:CD1871 NR:ns ## KEGG: CD1871 # Name: not_defined # Def: hypothetical protein # Organism: C.difficile # Pathway: not_defined # 1 116 46 161 385 193 97.0 2e-48 MSINANGKNETFKPSDYTLEAKKEYVYEYLGLKFKLSDKFRNYIADKKIAMLDDQSPIDK ELKYAILTFEKMTEEQKNAVIEKMGDGYKNWQNELERIGTIGIFEKNTSEEKNLKL >gi|284795534|gb|ADDQ01000015.1| GENE 3 1332 - 1817 189 161 aa, chain + ## HITS:1 COG:no KEGG:EF1871 NR:ns ## KEGG: EF1871 # Name: not_defined # Def: thioredoxin family protein # Organism: E.faecalis # Pathway: not_defined # 1 161 1 161 161 297 100.0 7e-80 MLSEKTDLENTEAFNKESVKDLRKLSTKDINGKDFTSKDFEKYDLTMVNVFATWCTACVK EIPDLVEVQNEMKSKGVNIVGVVTDPVDDNGENKEAIEKSKLIHEKTKASYPFLMPDKTN FNGRLNGIQAMPETFFVDSNGETKVVLDKAIRICMECIGIG >gi|284795534|gb|ADDQ01000015.1| GENE 4 2725 - 4002 630 425 aa, chain + ## HITS:1 COG:SP0599 KEGG:ns NR:ns ## COG: SP0599 COG0577 # Protein_GI_number: 15900507 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 37 425 1 387 387 249 37.0 5e-66 MIKNAIAYITRKKNRTLIIFIILTIVLSCLYSCLTIMKSSNEIEKALYESSNSSISITKK DGKYFNVNQFKDIEKLKEIEEKIIQYDGLAKLKDAKVVSGEQRINREDLSDEFKNVVSLE ATNNTKRNILFSSGVFTIKEGKNIEENDKNSIIVHEEFAKQNNLKLGDEVDLELLDIEKS GKIKSHKFKIIGIFSGKKQETYTGLSSDFSENMVFVDYSTSQEVLNNSENNEIANKILMY SGSAESTDLALNKLKELKIDESKYFVEKDSNAFEESLESVSGIKYIIKVMTYSIMLVGMV VLSLILILWLRERIYEIGIFLSIGTSKIQIIMQFIFELIFISIPSIISSLFLGNVLLKVI VDGFINSEDSMISGGSLINSSSFMSNITTLGQSYLILISIIVLSVVFASSLMLIKKPKEI LSKIS >gi|284795534|gb|ADDQ01000015.1| GENE 5 4009 - 4668 250 219 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 189 1 199 223 100 33 5e-21 IMDILEIKNVAYSYANSKEKVLSGVNQKFELGKFYAIVGKSGTGKSTLLSLLAGLDKPQT GKILFKNEDIQNKGYSNHRKNNISLVFQNYNLIDYLSPIENIRLVNKSADESILFELGLD KKQIKRNVMKLSGGQQQRVAIARALVSDAPIILADEPTGNLDSVTAGEIINILKTLAKDR NKCVIVVTHSKEVADSADIILELSGKKLKKVNKMNLEVE >gi|284795534|gb|ADDQ01000015.1| GENE 6 4668 - 6044 920 458 aa, chain + ## HITS:1 COG:SP0601 KEGG:ns NR:ns ## COG: SP0601 COG0577 # Protein_GI_number: 15900509 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 456 1 457 459 506 60.0 1e-143 MIKNAFAYVTRKSLKSLIIILVILSMSTLSLISLSIKDATDRASKETFANITNSFSMEIN RQVNPGTPRGGGNVKGEDIKKISQTDSIDSYVKRINSVADLVDYDIIETQETLANQSPER AKNFKRTVMLTGVNDSTKETKFVSEAYKLVEGKHLENEDKNKILMHKDLAEKNNLKVGDK IKIKSNLFDADNEKGADETVEVEIKGLFDGHNSGGVSAAQELYENTLITDVHTAAKVYGN TEDTAVYQDATFFVKGDKNLDSVIKDLGKIDINWREYNLIKSSSNYPALQQSISGIYSIS NKLFFGSLIFAGVVVSLLLFLWMNARKKEIAVLLSLGISKLEIFGQFLIEMVFISIPAFV GSYFLAQYTADKLGNNILNKVTGDIAKQIAKQSASSQLGGGAEAEGFNKTLSSLDINVLP KFMIYVVIFMSLVLLVSLIISSFNILRRNPKELLIDNN >gi|284795534|gb|ADDQ01000015.1| GENE 7 6175 - 6795 292 206 aa, chain - ## HITS:1 COG:SP1582 KEGG:ns NR:ns ## COG: SP1582 COG3464 # Protein_GI_number: 15901424 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pneumoniae TIGR4 # 1 197 212 402 418 146 41.0 3e-35 MYAPYVSLVKKLFPNAQLIIDRFHIVQHIGRTFLNHRVKETTARLKGTSHSQRGLGKKLK RYWKLLQKEEAKLNYEKRVWRASFKDYLTESEIVDRLLSACPNLRQGYQLYQDILYAVKK RDQSLFEDCLNREVSGLPETYTTTLRTFKKFLPQIQNALHYSYSNGPLECLNNHIKVLKR NAYGFRSFYNFKLRIMIRHGKTFLTK >gi|284795534|gb|ADDQ01000015.1| GENE 8 6831 - 7085 123 84 aa, chain - ## HITS:1 COG:FN0275 KEGG:ns NR:ns ## COG: FN0275 COG3464 # Protein_GI_number: 19703620 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 1 83 130 212 317 77 46.0 7e-15 MTEIARQKNISTSSVYRVMKRFYRPLNPFKQTLPKVLCFDEFKSVRHVTSAMSFIMMDGQ SHALLDIVENRRLPYLERYFLGFH >gi|284795534|gb|ADDQ01000015.1| GENE 9 7217 - 7327 181 36 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|69243909|ref|ZP_00602487.1| ## NR: gi|69243909|ref|ZP_00602487.1| Transposase, IS204/IS1001/IS1096/IS1165 [Enterococcus faecium DO] # 1 31 1 31 424 62 87.0 7e-09 MDNHTRKLLGLTDKHLFFDEDWLIEKEYMSIALIWS >gi|284795534|gb|ADDQ01000015.1| GENE 10 7615 - 8268 588 217 aa, chain + ## HITS:1 COG:SP0603 KEGG:ns NR:ns ## COG: SP0603 COG0745 # Protein_GI_number: 15900511 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Streptococcus pneumoniae TIGR4 # 1 217 1 218 218 263 62.0 3e-70 MKILTVEDDNMIREGISEYLSEFGYTVIQAKDGREALSKFNSDINLVILDIQIPFINGLE VLKEIRKKSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLPVLKARIDSLIKKNYGH LEKFEYKDLSVNFNSYTAKINGEEIDVNAKELEVLKCLLDNNGQVLTRMQIIDYVWKDSE ETPYDRVIDVYIKELRKKLQLDCITTIRNVGYKLERK >gi|284795534|gb|ADDQ01000015.1| GENE 11 8406 - 9584 623 392 aa, chain + ## HITS:1 COG:SP0604 KEGG:ns NR:ns ## COG: SP0604 COG0642 # Protein_GI_number: 15900512 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Streptococcus pneumoniae TIGR4 # 2 388 49 434 442 286 40.0 5e-77 MANEISSNMNGKEIKYIEQTLEFYSKSSEIKVFIKEKNNKNEIQIKDNINVNLESDSNSL IIEEKEIKLNDGKKTNLQFVSTADMQKDAKDLSLKFLPYSLLISILFSAIISLIYAKSIK NNIQEIKIVTDKMMKLDKKMSLKVSSNDEVGELKQQINDLYSTLLRTIDDLEFKNKEILK LEKLKYDFFKGASHELKTPLASLKIILENMKYNIGKYKERDIYINECIEIVDSLTKNISQ ILSVHSIENLNNDEEYLKINDTLEDILKKYEILANQKKITVNNYILDENVYIGKTALKII LSNLISNAVKYTDVNGVINIGIVNDWLYIENSYGNNKISNMDKIFDVKFDLNKENSNGLG LYIVSNILNNYNIEYKVLQDEEFFIFKIKIFS >gi|284795534|gb|ADDQ01000015.1| GENE 12 9909 - 10862 487 317 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 316 73 389 391 322 51.0 5e-88 MNLTIPRDRNGELSQQTLPAYKRTNDSLETTIIQLFQKGITMAEISKLIEKMYGHHYTPQ TISNMSKLVAEDVLAFKERTLEANYSVIFMDATHIPVKRQTVSKEAVYITIGIRLDGTKE VLGFTIAPTESAYIWKEVLQDLRKRGLEEVLLVVTDGLSGIEESIHSVYPNAQFQQCCVH VSRNIAHKVRVRDRKEICEDFKLVYQANSKEEALDHIDFMIRKWKKQYPRVVNLLLNPAL LTFYNFPHAIRRTIYSTNLIEGFNKQLKRYTRRKEQFPNEESLERFFISQFNQYNQKFLG RIHKGFKEIQDTLESMI >gi|284795534|gb|ADDQ01000015.1| GENE 13 10932 - 11078 278 48 aa, chain - ## HITS:1 COG:no KEGG:EF1874 NR:ns ## KEGG: EF1874 # Name: not_defined # Def: IS256 family transposase # Organism: E.faecalis # Pathway: not_defined # 1 48 1 48 396 70 70.0 1e-11 MTKFTIEIMQTLLNKGDLDELFQDHLERAINSLLQAELTAFLDYEKYD >gi|284795534|gb|ADDQ01000015.1| GENE 14 11331 - 12176 629 281 aa, chain + ## HITS:1 COG:RSp0668 KEGG:ns NR:ns ## COG: RSp0668 COG5495 # Protein_GI_number: 17548889 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Ralstonia solanacearum # 1 262 11 272 294 105 25.0 9e-23 MNVGFIGAGKVGCSFGKYFQEHKIQVTGFYSKSEDSSLAASNFTSSKQYLNLRELVDEND TIFITTPDGQIQEVWQEIKNYQIKNKLICHCSGAISSDIFSNIQDYGAYGYSVHPMFSIS DKYNSYKKLKKSFITIEGDEKYAKFLCDFFKKLGNSTVIVSKENKSLYHAASVVSSNLVL GLINTSVTYLIQCGFTEKMAIEALYPLIEFNIRNIKEKGIIESLTGPVERCDISTIKGHC EVLSDEDRALYMLLSKNVLEIAMLKNINRDYSELEKYLGES >gi|284795534|gb|ADDQ01000015.1| GENE 15 12188 - 13015 624 275 aa, chain + ## HITS:1 COG:CAC2914 KEGG:ns NR:ns ## COG: CAC2914 COG0413 # Protein_GI_number: 15896167 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate hydroxymethyltransferase # Organism: Clostridium acetobutylicum # 1 274 1 274 276 383 68.0 1e-106 MKNTAVTFKESKLRNEKLTMLTAYDYSTAKIIDEAGINGILVGDSLGMVCLGHEDTLSVT MEDMIHHTRAVTRGAKNTLVVADMPFMSYQTSVYDSVVNAGRLIKEGRAQVVKLEGGIEV CDKIEAIVKASIPVMAHIGLTPQSVNAFGGFKVQGKDKEAAKELIRAAKAVEKAGAFAVV LECVPTKLAELISKEISIPTIGIGAGAGCDGQILVYQDMLGMYSDFTPKFVKKYANLSEE MNKAFTKYIEEVKDGVFPGPEHGFKISDDVLEKLY >gi|284795534|gb|ADDQ01000015.1| GENE 16 13030 - 13878 412 282 aa, chain + ## HITS:1 COG:CAC2915 KEGG:ns NR:ns ## COG: CAC2915 COG0414 # Protein_GI_number: 15896168 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate synthetase # Organism: Clostridium acetobutylicum # 1 281 1 281 281 383 67.0 1e-106 MVIFKTVNDVRSQVKEWKKQGLKVGLVPTMGYLHEGHESLIRKASKENDKVVVSIFVNPT QFGKNEDLGSYPRDLERDIEVCTRGRATAIFNPEVEEMYCDNASTFVNITGLTEGLCGAS RPIHFRGVCTVVSKLFNIIPADRAYFGEKDAQQLAVIKRMVRDLNIDIDVVGCPIIREED GLAKSSRNTYLSLEERSSATILNKSLTLAKEALNNGERDSLKIIEIISKNINTCNLAKID YVEVVDSLSLQRVNYIEKSVLVAIAVFIGKTRLIDNFTFELQ >gi|284795534|gb|ADDQ01000015.1| GENE 17 13891 - 14286 328 131 aa, chain + ## HITS:1 COG:CAC2916 KEGG:ns NR:ns ## COG: CAC2916 COG0853 # Protein_GI_number: 15896169 # Func_class: H Coenzyme transport and metabolism # Function: Aspartate 1-decarboxylase # Organism: Clostridium acetobutylicum # 1 126 1 126 127 167 62.0 7e-42 MKVTMLKGKIHRAKVEQAELDYVGSITVDMDLLEAAGIYEYEKVQIVDVNNGNRFETYTI AGERGTGMICLNGAAARCVSTGDKIILMAYCELNENEVKDHRPKVVFVDDNNKVERVTSY EKHGRLSDIIL >gi|284795534|gb|ADDQ01000015.1| GENE 18 14439 - 14552 63 37 aa, chain - ## HITS:1 COG:pli0076 KEGG:ns NR:ns ## COG: pli0076 COG2801 # Protein_GI_number: 18450358 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Listeria innocua # 1 35 215 249 269 66 82.0 1e-11 MKKEELNRRSFHSIEEVRLACFAYIEGFYNTKRPHGT >gi|284795534|gb|ADDQ01000015.1| GENE 19 14556 - 14732 99 58 aa, chain - ## HITS:1 COG:SPy0565_2 KEGG:ns NR:ns ## COG: SPy0565_2 COG2801 # Protein_GI_number: 15674656 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pyogenes M1 GAS # 10 58 182 230 251 75 63.0 3e-14 FVKKTVAIPLTSSVLFHTDQGSQYTSFEFRKFIEDHPIVHSLSKPGYPWDNAVTEAFF Prediction of potential genes in microbial genomes Time: Sun May 15 12:25:16 2011 Seq name: gi|284795533|gb|ADDQ01000016.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont47.1, whole genome shotgun sequence Length of sequence - 3083 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 2, operones - 2 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 1159 1321 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 2 1 Op 2 . + CDS 1203 - 1421 416 ## EF1014 hypothetical protein 3 1 Op 3 . + CDS 1441 - 1635 197 ## EF1015 hypothetical protein 4 1 Op 4 . + CDS 1635 - 2045 409 ## EF1016 hypothetical protein + Term 2048 - 2081 -0.2 + Prom 2127 - 2186 7.0 5 2 Op 1 10/0.000 + CDS 2321 - 2638 511 ## COG1440 Phosphotransferase system cellobiose-specific component IIB + Prom 2698 - 2757 7.1 6 2 Op 2 . + CDS 2780 - 3083 351 ## COG1455 Phosphotransferase system cellobiose-specific component IIC Predicted protein(s) >gi|284795533|gb|ADDQ01000016.1| GENE 1 2 - 1159 1321 385 aa, chain + ## HITS:1 COG:lin2856 KEGG:ns NR:ns ## COG: lin2856 COG1455 # Protein_GI_number: 16801916 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Listeria innocua # 2 376 95 445 454 352 56.0 9e-97 WGYNLAKAYNVNELAGGIVSLATLISGVAFAPNNTAELAVKVPEKIANAINGAEIGASIA NNQLTVNPWGWLNLNHLNGNAFFTVMIMGALSTIIFCKLMQADLTIKMPDSVPPAVSKAF AAILPATIALYVVAIINFTVSKLSGGQLLIDLIQKYIAEPFLGLSQGLGAVLIVTVFVQI FWFFGIHGPNVLAPVLEGIWGQAQLINIDIFQKGYEGKTGTAAVLAAIDDGKAYMWVRGS FDAFAWFGGSGGTIVLIIAILLFSKRADYLTVGKLSLGPGIFNINEPIMFGLPVVLNPIM FIPFVIAPLVATTIGWVATYLGLVAPVSQQVAWVTPPLLLSFLATGADWRAPIVALVCMV VTFLIWTPFVIAANKMDPALGESEQ >gi|284795533|gb|ADDQ01000016.1| GENE 2 1203 - 1421 416 72 aa, chain + ## HITS:1 COG:no KEGG:EF1014 NR:ns ## KEGG: EF1014 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 72 1 72 72 120 100.0 2e-26 MISIASAMKQEEIITLLEAYQGENETFTFKEKNGIKLFFEVEGDPETAAQVAKQLIKEQP WGGVLYFQATVV >gi|284795533|gb|ADDQ01000016.1| GENE 3 1441 - 1635 197 64 aa, chain + ## HITS:1 COG:no KEGG:EF1015 NR:ns ## KEGG: EF1015 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 64 1 64 64 112 98.0 5e-24 MIRNGLFLCSIGFLIVLYSLNPSSLNYDLLSLTTGIFFIGLGGYLFFKGKKVAEEEATKD EVKR >gi|284795533|gb|ADDQ01000016.1| GENE 4 1635 - 2045 409 136 aa, chain + ## HITS:1 COG:no KEGG:EF1016 NR:ns ## KEGG: EF1016 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 136 1 136 136 211 100.0 4e-54 MEITKTLTISADEFYTQLMNSVIFDIRKQTGKTLTRKQLRKFEYIKEYSKNSRAKIVIEE AVENKTYQFRTSTTKNDFSVRYELQPIDEKSCELRYTETMVSYGALQKLNDAVLGIFLSY FKKKQFYKMLKMMETA >gi|284795533|gb|ADDQ01000016.1| GENE 5 2321 - 2638 511 105 aa, chain + ## HITS:1 COG:lin2831 KEGG:ns NR:ns ## COG: lin2831 COG1440 # Protein_GI_number: 16801891 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIB # Organism: Listeria innocua # 4 104 2 100 101 120 68.0 5e-28 MAKKTIMLVCSAGMSTSLLVTKMQKAAEDRGMEADIFAVSASEADTNLENKEVNVLLLGP QVRFMKGQFEQKLQPKGIPLDVINMADYGMMNGEKVLDQAISLMG >gi|284795533|gb|ADDQ01000016.1| GENE 6 2780 - 3083 351 101 aa, chain + ## HITS:1 COG:lin2856 KEGG:ns NR:ns ## COG: lin2856 COG1455 # Protein_GI_number: 16801916 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Listeria innocua # 1 101 1 92 454 102 57.0 2e-22 MNGLMAWMEKYILPTAAKIGAQKHLVALRDAFIGTLPATMAGSVAVMINAIIRDLPQEFV STYAASLEADKGIFAVLNVIIGINGFVWNGTLAIAGLIFAF Prediction of potential genes in microbial genomes Time: Sun May 15 12:25:29 2011 Seq name: gi|284795532|gb|ADDQ01000017.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont48.1, whole genome shotgun sequence Length of sequence - 20194 bp Number of predicted genes - 18, with homology - 18 Number of transcription units - 6, operones - 4 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 36 - 905 1057 ## COG1307 Uncharacterized protein conserved in bacteria - Prom 928 - 987 10.5 - Term 962 - 1016 6.1 2 2 Op 1 3/0.000 - CDS 1030 - 2322 1586 ## COG0104 Adenylosuccinate synthase - Prom 2352 - 2411 7.0 - Term 2522 - 2554 2.5 3 2 Op 2 16/0.000 - CDS 2559 - 3926 1510 ## COG0305 Replicative DNA helicase - Prom 4124 - 4183 8.0 - Term 4151 - 4183 1.5 4 2 Op 3 9/0.000 - CDS 4200 - 4661 759 ## PROTEIN SUPPORTED gi|227518097|ref|ZP_03948146.1| 50S ribosomal protein L9 5 2 Op 4 . - CDS 4658 - 6634 785 ## PROTEIN SUPPORTED gi|162447066|ref|YP_001620198.1| bipartite protein: signaling protein and ribosomal protein L9 - Prom 6738 - 6797 3.6 - Term 6784 - 6821 7.3 6 3 Op 1 21/0.000 - CDS 6839 - 7078 397 ## PROTEIN SUPPORTED gi|29374670|ref|NP_813822.1| 30S ribosomal protein S18 7 3 Op 2 24/0.000 - CDS 7104 - 7670 622 ## COG0629 Single-stranded DNA-binding protein 8 3 Op 3 . - CDS 7715 - 8017 510 ## PROTEIN SUPPORTED gi|29374668|ref|NP_813820.1| 30S ribosomal protein S6 - Prom 8096 - 8155 7.9 - Term 8139 - 8191 15.3 9 4 Op 1 24/0.000 - CDS 8192 - 10693 3075 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 10 4 Op 2 9/0.000 - CDS 10749 - 12698 2381 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 11 4 Op 3 9/0.000 - CDS 12695 - 13822 1148 ## COG1195 Recombinational DNA repair ATPase (RecF pathway) 12 4 Op 4 6/0.000 - CDS 13809 - 14054 307 ## COG2501 Uncharacterized conserved protein - Prom 14198 - 14257 9.6 - Term 14426 - 14467 -0.8 13 4 Op 5 16/0.000 - CDS 14634 - 15764 1463 ## COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) - Prom 15888 - 15947 4.1 14 4 Op 6 . - CDS 15966 - 17309 1310 ## COG0593 ATPase involved in DNA replication initiation + Prom 17724 - 17783 7.3 15 5 Tu 1 . + CDS 17832 - 17966 223 ## PROTEIN SUPPORTED gi|29377774|ref|NP_816928.1| 50S ribosomal protein L34 + Term 18005 - 18064 9.1 + Prom 18019 - 18078 4.4 16 6 Op 1 22/0.000 + CDS 18164 - 18526 306 ## COG0594 RNase P protein component 17 6 Op 2 16/0.000 + CDS 18526 - 19353 1001 ## COG0706 Preprotein translocase subunit YidC 18 6 Op 3 . + CDS 19368 - 20144 1086 ## COG1847 Predicted RNA-binding protein Predicted protein(s) >gi|284795532|gb|ADDQ01000017.1| GENE 1 36 - 905 1057 289 aa, chain - ## HITS:1 COG:L123851 KEGG:ns NR:ns ## COG: L123851 COG1307 # Protein_GI_number: 15673853 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 1 289 1 288 289 209 38.0 6e-54 MNYQLVTDSCCDLPYTYLKENQVPFISMNIQIDGKEYRDDLGETFDYQNFLTAIKNGSMP TTSQVNVGRYNEFFRPFVEQGLPVIYLAFSSGLSGSYQSALQSVEMLKEEYDNVEIHIID TKAASLGQGMLVREAIRLQTDGHSLGEVVAYLEEQKMKLHSWVTVDDLKHLERGGRISKT AAALGGLMNIKPIIRVDAAGKLASVGKTRGRNKSLQKIAQETIQGIVEPMKQTLLIAYAG TKDDAEKVKELIEKEIEVNEILIYPLGPTITSHTGIGCIAVFSFGEKRK >gi|284795532|gb|ADDQ01000017.1| GENE 2 1030 - 2322 1586 430 aa, chain - ## HITS:1 COG:SPy0160 KEGG:ns NR:ns ## COG: SPy0160 COG0104 # Protein_GI_number: 15674367 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate synthase # Organism: Streptococcus pyogenes M1 GAS # 1 430 1 430 430 751 85.0 0 MSSVVVVGTQWGDEGKGKITDFLSENAEVIARYQGGDNAGHTIKFDGVTYKLHLIPSGIF YKEKISVIGNGVVVNPKSLVKELAYLKENNVATDNLRISDRAHVILPYHIKLDQLQEDAK GENKIGTTIKGIGPAYMDKAARVGIRIADLLDKEIFAERLQINLEEKNRQFVKMFDSEAI EFDDIFEEYYEYGQQIKQYVTDTSVILNDALDAGKRVLFEGAQGVMLDIDQGTYPFVTSS NPVAGGVTIGSGVGPSKINKVVGVCKAYTSRVGDGPFPTELFDETGETIRRVGKEYGTTT GRPRRVGWFDSVVMRHSKRVSGITNLSLNSIDVLSGLETVKICTAYELDGELIYHYPASL KELSRCKPVYEELPGWSEDITGCKTLADLPANARNYVHRISELVGVRISTFSVGPDRNQT NVLESVWAQI >gi|284795532|gb|ADDQ01000017.1| GENE 3 2559 - 3926 1510 455 aa, chain - ## HITS:1 COG:L0286 KEGG:ns NR:ns ## COG: L0286 COG0305 # Protein_GI_number: 15672728 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Lactococcus lactis # 1 452 1 452 455 535 67.0 1e-152 MNELLQDRVPPQNIEAEQAVLGSIFLDADVLIEAMEYVEPKDFYRRSHQLIFQTMMTLSD RNEAIDVVTIKDRLEQENLLEDVGGLSYLSDLALAVPTAANVIYYAKIVEQKSLLRNLIQ TATEIVTKGFEQGEDVESILDDAERSILEVSEKRNRSGFLSISDVLNTTIANIDQLYQND EEITGLPTGYQALDKMTAGLQAEELIILAARPAVGKTAFALNIAQNVGTKTDKAVAIFSL EMGAESLVNRMLCAEGSIEASHLRTGQLSEEEWQNLIIAMGSLSRANIYIDDTPGIKITE IRAKCRKLAQEKGNLGLILIDYLQLIEGTGKENRQQEVSDISRQLKKLAKELKVPVIALS QLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYDRGEGEDGDHEPPEVDNVV EVIIEKNRSGARGTVELLFIKEYNKFSSLSPRTEF >gi|284795532|gb|ADDQ01000017.1| GENE 4 4200 - 4661 759 153 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227518097|ref|ZP_03948146.1| 50S ribosomal protein L9 [Enterococcus faecalis TX0104] # 1 153 1 153 153 296 99 6e-80 MKEMKVIFLQDVKGKGKKGDVKEVPTGYAQNFLIKNGYAKEANKGSMSALAGQKKAQEKH EAEVLAQAKEMQAFLEDEKTVVEIKAKAGEDSRLFGSIPSKQIAEALNKQYNVKLDKRKI ELANPIRSLGYTNVPVKLHHEVTAKIKVHVVAE >gi|284795532|gb|ADDQ01000017.1| GENE 5 4658 - 6634 785 658 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|162447066|ref|YP_001620198.1| bipartite protein: signaling protein and ribosomal protein L9 [Acholeplasma laidlawii PG-8A] # 9 647 6 659 818 306 30 1e-106 MQKKRIQKNGFLIVVGLLLVEFLLYFLLTNKWLLLAVIIALDIFLLVVIRLLIRDVEITN VEKIQEASSIAEQSLDYVVNEVPVGIITYNGETRAVEWLNPYAASIFNKDNQLTLTASQV TSYLELAERNQDIFTIDENTYRFSVNKEQHTITFEDITKESNLYQEKVEMQTAIGIVSVD NYDDVTDTMDEKEISYLNSFITTMVSDWMDQYKVFYKRINAERYFFIAQWEDIQKMMDEK FSILDTIRKESANHEVAITLSMGIAYGGPTLDQTGTTAQTNLDTALVRGGDQVVVKEAKD EAKPLFFGGKTAVTTKRSQVRSRAMSMAIKGIIAESADIYIMGHRYPDMDALGSAFGVAR LASFNNRKAWIVLDENEIIPDVKRVLEAIKEYPELEERIISPKEAMKRKKESSLLVMVDY HKPSLSISQELYERFDKVVIIDHHRRGDEFPAKPLLSYIESSASSASELVTELIEYQSNS ANKLQAFEATMMLAGIVVDTKSFNTRTTARTFDVASYLRTCGADSSLVQYLLSSDLTSYL EMNNLISKSEYVTKDTVVVAGSEDKEYDSVTAAKTADTLLSMAGINAAFVITKRTDQQIG ISARSNGSINVQIIMENLGGGGHFTNAAVQLSNVTVAEVKEQLLDVIRQNINEMYEQE >gi|284795532|gb|ADDQ01000017.1| GENE 6 6839 - 7078 397 79 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374670|ref|NP_813822.1| 30S ribosomal protein S18 [Enterococcus faecalis V583] # 1 79 1 79 79 157 100 5e-38 MAQQRRGGRKRRKVDYIAANHIEYIDYKDTELLKRFISERGKILPRRVTGTGAKNQRKLT IAIKRARIMGLLPFVSDEQ >gi|284795532|gb|ADDQ01000017.1| GENE 7 7104 - 7670 622 188 aa, chain - ## HITS:1 COG:L0302 KEGG:ns NR:ns ## COG: L0302 COG0629 # Protein_GI_number: 15674172 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Lactococcus lactis # 1 188 1 166 166 182 59.0 3e-46 MINNVVLVGRLTKDPDLRYTASGSAVATFTLAVNRNFTNQNGDREADFINCVIWRKPAET MANYARKGTLLGVVGRIQTRNYENQQGQRVYVTEVVCENFQLLESRSASEQRGTGGGSFN NNENGYQSQNRSFGNNNAGSGFNNNNNSFNPSSSQSQNNNGMPDFDKDSDPFGGSGSSID ISDDDLPF >gi|284795532|gb|ADDQ01000017.1| GENE 8 7715 - 8017 510 100 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374668|ref|NP_813820.1| 30S ribosomal protein S6 [Enterococcus faecalis V583] # 1 100 1 100 100 201 100 4e-51 MSQDTKYEIMYIIRPNIDEEAKTALVERFDTILKDNGAEVIESKDWEKRRLAYEMNGFRE GIYHIVNVTSPSTAGAINEFDRLAKINDDIIRHMIVKVEA >gi|284795532|gb|ADDQ01000017.1| GENE 9 8192 - 10693 3075 833 aa, chain - ## HITS:1 COG:SPy1152 KEGG:ns NR:ns ## COG: SPy1152 COG0188 # Protein_GI_number: 15675129 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Streptococcus pyogenes M1 GAS # 8 832 5 827 828 1117 70.0 0 MSEEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTP DKPHKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAA MRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMA TNIPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGS ITVRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREG MRIVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKE VITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQ AQAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFG DARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQGMGVH DDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQA IISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVTTNGNQ KMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYVVGAAILDENKEVLVITENGY GKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGDEDILLITNKGVIIRFNVDSV SQTGRATLGVRLMRMEDGAKVVTMAVVEPEEVEEEIVEVVETTENETTSETEE >gi|284795532|gb|ADDQ01000017.1| GENE 10 10749 - 12698 2381 649 aa, chain - ## HITS:1 COG:L0283 KEGG:ns NR:ns ## COG: L0283 COG0187 # Protein_GI_number: 15672887 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Lactococcus lactis # 1 643 1 646 651 961 77.0 0 MTEEEKNMRERAQEYDASQIQVLEGLEAVRKRPGMYIGSTSGEGLHHLVWEIVDNSIDEA LAGFAKSIQVIIEPDDSITVIDDGRGIPVGIQAKTGRPAVETVFTVLHAGGKFGGGGYKV SGGLHGVGSSVVNALSTSLDVRVYKDGKVYYQEYRRGAVVDDLKVIEETDRHGTTVHFIP DPEIFTETTVYDFDKLATRVRELAFLNRGLHISIEDRREGQEDKKEYHYEGGIKSYVEHL NANKDVIFPEPIFIEGEQQDITVEVSMQYTDGYHSNILSFANNIHTYEGGTHESGFKTSL TRVINDYARKQKLMKENDEKLTGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSEVRTVT DRLFSEYFTKFLMENPTVGKQIVEKGMLASKARLAAKRAREVTRRKGALEISNLPGKLAD CSSKDPEKCELFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILANEEIRS LFTAMGTGFGEDFDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRFMRPIVEAGYVYIA QPPLYGVKQGKNITYVQPGKHAEEELAKVLEELPASPKPSVQRYKGLGEMDDHQLWETTM DPEKRLMARVSVDDAIEADQIFEMLMGDRVEPRRAFIEENAHYVKNLDI >gi|284795532|gb|ADDQ01000017.1| GENE 11 12695 - 13822 1148 375 aa, chain - ## HITS:1 COG:lin0005 KEGG:ns NR:ns ## COG: lin0005 COG1195 # Protein_GI_number: 16799084 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair ATPase (RecF pathway) # Organism: Listeria innocua # 1 372 1 370 370 399 55.0 1e-111 MRLNELTLQHYRNYETVSLDFPKTLNLFLGENAQGKTNLLESIYVLAMTRSHRTSNEKEL IGWEQAAAKISGVVEKKTGTVPLEILISNKGRKTKVNHIEQKRLSAYIGQLNVILFAPED LSLVKGSPQVRRKFIDMELGQVSPIYLYDLVQYQSVLKQRNQYLKQLAEKKQTDTVYLDI LTEQLAEFGGKVLYARLGFLKKLEHWANLLHQKISHGRETLTIDYASSIPIDNTDLSLEA LQNQLLQQLMNNRKRELFKANTFLGPHRDDLLFIVNGQNVQTYGSQGQQRTTALSIKLAE IDLMHSETGEYPVLLLDDVMSELDNERQIHLLETIEGKVQTFLTTTSLDHIKDKLTVEPD IFYVQQGKIERNSAT >gi|284795532|gb|ADDQ01000017.1| GENE 12 13809 - 14054 307 81 aa, chain - ## HITS:1 COG:BS_yaaA KEGG:ns NR:ns ## COG: BS_yaaA COG2501 # Protein_GI_number: 16077071 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 70 1 70 71 70 52.0 5e-13 MKKTFVLATEYITLGQFLKEINVIGSGGQAKWYLADNSVFVDGELENRRGRKLYAGMMIE IPEEGTFFMVKNGNESDDAAE >gi|284795532|gb|ADDQ01000017.1| GENE 13 14634 - 15764 1463 376 aa, chain - ## HITS:1 COG:BS_dnaN KEGG:ns NR:ns ## COG: BS_dnaN COG0592 # Protein_GI_number: 16077070 # Func_class: L Replication, recombination and repair # Function: DNA polymerase sliding clamp subunit (PCNA homolog) # Organism: Bacillus subtilis # 1 375 1 377 378 343 51.0 3e-94 MKLTVKRSVFLQELQTVQRAISSKTTIPILTGVKIVLSEDGLSLTGSNADISIESFLSKD DEKAQMTIERTGSIVLQSRFFGEIIRKLPEDMFTMEVLDNNQVAITSGKADFTVNGLDAD NYPHLPVIDTQNQMKLPVHLLTKIISETGFAVSMHESRPILTGVHFILENQKLLAVATDS HRLSQRVIPTEQAVEDFNIVIPGKSLTELSRSLTNEEEMVEISIMENQVLFKTETMYFYS RLLEGNYPDTNRLIPTSHNTQIEFYVPELLSAIERASLLSHEGRNNIVRLSISPDSVVLY GNSPEIGKVEEALNYENVSGEALDISFNPDYMKDALRAFGDMNITVKFLSPIRPFTLEPT ETELDFIQLITPVRTN >gi|284795532|gb|ADDQ01000017.1| GENE 14 15966 - 17309 1310 447 aa, chain - ## HITS:1 COG:BH0001 KEGG:ns NR:ns ## COG: BH0001 COG0593 # Protein_GI_number: 15612564 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Bacillus halodurans # 1 447 1 449 449 474 53.0 1e-133 MPDVESFWHSLEEAYQAILSAPSFDAWIKTTRPLKLDNNQLWLEVPSAVHRDYWEKNLSA KIVETGFKLTGAEVMPHFVVADEKDAALAQELEEPAEEEVVFSEQSKKAMLNPKYTFDTF VIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMLVNQPDAKVKYV SSETFTNEFINSIQTKTSEQFRKEYRNVDLLLVDDIQFLAEKEATLEEFFHTFNDLYNEN KQIVLTSDRPPNDIPKLPERLVSRFAWGLSVDITPPDLETRIAILRKKADAERLEIPDDT LSYIAGQIDSNIRELEGALVRVQAFATINGEDITTSLAADALKSLKSVGSKNQLSILQIQ EEVSKYYHVPLKDLKGKKRVKTIVVPRQISMYLAREMTDNSLPKIGAEFGGKDHTTVIHA HEKIQQLLEKDPAIQKEVSEIKNLLNS >gi|284795532|gb|ADDQ01000017.1| GENE 15 17832 - 17966 223 44 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29377774|ref|NP_816928.1| 50S ribosomal protein L34 [Enterococcus faecalis V583] # 1 44 1 44 44 90 100 8e-18 MKRTYQPNKRKRQKVHGFRKRMSTKNGRRVLASRRRKGRKVISA >gi|284795532|gb|ADDQ01000017.1| GENE 16 18164 - 18526 306 120 aa, chain + ## HITS:1 COG:SPy0246 KEGG:ns NR:ns ## COG: SPy0246 COG0594 # Protein_GI_number: 15674428 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNase P protein component # Organism: Streptococcus pyogenes M1 GAS # 3 114 1 110 119 111 58.0 3e-25 MPMKKSYRVKKEKEFQQVFNKKQSCANRRFVVYVLEKPQQAHFRVGISVGKKIGNAVTRN AVKRKIRASLFQLKDRISPEIDFIVIARPGLEKLSSEEVKANLTHVLNLAKILDVREGIE >gi|284795532|gb|ADDQ01000017.1| GENE 17 18526 - 19353 1001 275 aa, chain + ## HITS:1 COG:L131778 KEGG:ns NR:ns ## COG: L131778 COG0706 # Protein_GI_number: 15672111 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Lactococcus lactis # 23 266 21 267 269 270 57.0 2e-72 MKKYKRLLLMAGLVTLVFVLSACGTAPVSESSTGIWDRYIVYYFAQAIKFLSLGGSVGIG IILFTLVIRIILLPLMHFQTKSMRKTQELQPQLKALQQKYSSKDPETQRLFREEQQRLYA ENNVNPYIGCLPLLVQLPIMMALYQAISRVPELKEGTFLWLSLDKPDPYLILPILAAVFT FASTYLSSMSQLETNASLKIMNYVMPAMIFFMGISLASSLSLYWVVSNAFQTGQTLLLNN PFKIRKEREEAARQAKARERALERAKSPKKKGKKK >gi|284795532|gb|ADDQ01000017.1| GENE 18 19368 - 20144 1086 258 aa, chain + ## HITS:1 COG:lin2985 KEGG:ns NR:ns ## COG: lin2985 COG1847 # Protein_GI_number: 16802043 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein # Organism: Listeria innocua # 63 256 11 206 206 138 41.0 8e-33 MPIYEGNTIEEATQKGLQALGLTKEDVTIDVLDEGKKGFLGLGKKLAQISMEPTISEQVT EAVEETVEDIVVADEATAVEEAVEELTEAIPSLSEESTHSLENLEDEAAITELAMYLTNI SNELNAPAMVRIVRENGNIIFHLETEKQGILIGKHGKVLNALQYLAQVFIHRIASNKLSI VVNVGNYREKRHEILERLAKRTAEKAKRTGRPVFLEPMPAFERKQIHHTLSKDEQIKTHS EGDEPYRYLVVEPVKKYF Prediction of potential genes in microbial genomes Time: Sun May 15 12:25:34 2011 Seq name: gi|284795531|gb|ADDQ01000018.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont52.1, whole genome shotgun sequence Length of sequence - 3807 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 3, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 400 402 ## COG1264 Phosphotransferase system IIB components - Prom 455 - 514 8.3 + Prom 500 - 559 15.4 2 2 Op 1 5/0.000 + CDS 591 - 2030 1257 ## COG1621 Beta-fructosidases (levanase/invertase) 3 2 Op 2 . + CDS 2032 - 2994 978 ## COG1609 Transcriptional regulators + Term 3001 - 3059 17.0 - Term 2991 - 3045 8.9 4 3 Op 1 . - CDS 3059 - 3421 299 ## COG2337 Growth inhibitor 5 3 Op 2 . - CDS 3415 - 3678 358 ## EFA0072 PemI family protein - Prom 3699 - 3758 10.9 Predicted protein(s) >gi|284795531|gb|ADDQ01000018.1| GENE 1 1 - 400 402 133 aa, chain - ## HITS:1 COG:VCA0653_1 KEGG:ns NR:ns ## COG: VCA0653_1 COG1264 # Protein_GI_number: 15601411 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIB components # Organism: Vibrio cholerae # 1 90 1 91 93 94 52.0 5e-20 MDYAKLASDIILAVGKDNLIAAAHCATRLRLVLKDNTKVNQKALDENPNVKGTFKIDGQY QVIIGAGDVNFVYDELIKKTGLSELSTDDLKQIVDKNKKFNPIMALIKLLSEIFVPIIPA LVAGGLLMALRNF >gi|284795531|gb|ADDQ01000018.1| GENE 2 591 - 2030 1257 479 aa, chain + ## HITS:1 COG:SPy1816 KEGG:ns NR:ns ## COG: SPy1816 COG1621 # Protein_GI_number: 15675646 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-fructosidases (levanase/invertase) # Organism: Streptococcus pyogenes M1 GAS # 1 479 1 479 479 646 61.0 0 MELSREIRYRAYSEWSKDEITKIKENIKQSPWHASYHIEPKTGLLNDPNGFSFFNGKFTL FYQNWPFGAAHGLKKWVHAESDDLVHFNITGTELLPDTKYDSHGAYSGSAYEVDGKLLLL YTGNVRDKNWRRDSFQLGAWMDRSYNITKCEDVFINKPEDVTDHFRDPQIFDYKGQFYAI VGGQSLEKRGVIKLYKAVGNSVEKWSEVGNLDFCSSGSEYMIECPNLLFVNDTPILIYCP QGLDKSELSYDNIYPNTYKICQSFDERTAKLVGSSKIKNLDYGFDVYATQGFNSPDGRTL IVSWIGLPDVEYPTDKYDYQGAMSLVKELSINNGKLYQYPVDAIKTLRTSCEDFTSKIET SNTYELEVTFPANQKSELLLFADDKGNGLSLIVDTKEGKVILDRSKAGIQYAIDFGMTRE CLIDTEETIANIFVDNSIIEIFINKGEKVFTSRVFPEKDQNGIQIKSGKPIGKYFELEY >gi|284795531|gb|ADDQ01000018.1| GENE 3 2032 - 2994 978 320 aa, chain + ## HITS:1 COG:SPy1817 KEGG:ns NR:ns ## COG: SPy1817 COG1609 # Protein_GI_number: 15675647 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 320 1 321 321 470 76.0 1e-132 MVAKLTDVAELAGVSPTTVSRVINNKGYLSEKTKKNVHEAMKILGYKPNNLARGLQGKSP QLIGLIFPNISNIFYAELIEYLEIELFNQGYKTIICNSENDPGKEREYLEMLEANQVDGI ISSSHNLGIADYERVQAPIIAFDRNLAPNVPIIASDNFEGGKLAASVLRKNGCQNIIMIT GNDNTDSPTGLRALGFSFQIPEGKVFKVPNSLSTIRREMEIKSIISTNKPDGIFISDDLT AILTMKIVKKLNLNIPEDVKIIGYDGTSFIEQFFSQLTTIKQPIDELAKLIVDVLLKKIK GEKISKDYILPVSLLSGGSI >gi|284795531|gb|ADDQ01000018.1| GENE 4 3059 - 3421 299 120 aa, chain - ## HITS:1 COG:BH3721 KEGG:ns NR:ns ## COG: BH3721 COG2337 # Protein_GI_number: 15616283 # Func_class: T Signal transduction mechanisms # Function: Growth inhibitor # Organism: Bacillus halodurans # 4 109 3 106 109 68 32.0 4e-12 MVKVPHQGDILLLNTAPRSGHEQTGKRPYIVLSHDIIADYSNVVIVAPISSTKRNYPLYV SINPSYGMKTSGKVLLDQLTTIDYEARQCVFLETAHEKLIDELLLKVRTVFQKVNKTNKF >gi|284795531|gb|ADDQ01000018.1| GENE 5 3415 - 3678 358 87 aa, chain - ## HITS:1 COG:no KEGG:EFA0072 NR:ns ## KEGG: EFA0072 # Name: not_defined # Def: PemI family protein # Organism: E.faecalis # Pathway: not_defined # 1 87 1 87 87 149 100.0 3e-35 MVMLSIKKWGNSNGLRLPKSVMEYLQIHTEDKVKITQEESNGKKRLIIEAVDSDNDLTIE QLFENYKEEKVHVTIQDLGNAVGNEKW Prediction of potential genes in microbial genomes Time: Sun May 15 12:25:42 2011 Seq name: gi|284795530|gb|ADDQ01000019.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont53.1, whole genome shotgun sequence Length of sequence - 15414 bp Number of predicted genes - 21, with homology - 19 Number of transcription units - 7, operones - 6 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 97 - 156 8.0 1 1 Op 1 42/0.000 + CDS 191 - 910 204 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 2 1 Op 2 12/0.000 + CDS 912 - 1754 786 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 3 1 Op 3 . + CDS 1751 - 2701 1014 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin 4 1 Op 4 . + CDS 2716 - 2949 162 ## EF0578 iron-dependent repressor family protein 5 1 Op 5 . + CDS 2979 - 3071 98 ## 6 1 Op 6 . + CDS 3077 - 3199 105 ## + Prom 3207 - 3266 4.8 7 2 Tu 1 . + CDS 3344 - 3862 345 ## EF0579 transcriptional regulator, putative + Term 3876 - 3912 -0.3 + Prom 3907 - 3966 4.5 8 3 Op 1 34/0.000 + CDS 3993 - 4661 285 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 9 3 Op 2 . + CDS 4672 - 6087 811 ## COG1122 ABC-type cobalt transport system, ATPase component 10 3 Op 3 . + CDS 6105 - 6674 592 ## EF0582 hypothetical protein 11 4 Op 1 35/0.000 + CDS 6784 - 8538 215 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 12 4 Op 2 . + CDS 8492 - 10264 203 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein + Term 10381 - 10440 1.6 + Prom 10539 - 10598 6.7 13 5 Op 1 . + CDS 10787 - 11047 437 ## PROTEIN SUPPORTED gi|229546432|ref|ZP_04435157.1| 30S ribosomal protein S14 14 5 Op 2 . + CDS 11041 - 11241 337 ## PROTEIN SUPPORTED gi|227554644|ref|ZP_03984691.1| 50S ribosomal protein L32 15 5 Op 3 . + CDS 11272 - 11649 523 ## EF0587 hypothetical protein 16 5 Op 4 . + CDS 11670 - 11819 246 ## PROTEIN SUPPORTED gi|229546435|ref|ZP_04435160.1| 50S ribosomal protein L33 17 5 Op 5 . + CDS 11843 - 12007 177 ## EF0589 hypothetical protein + Prom 12244 - 12303 6.0 18 6 Op 1 . + CDS 12346 - 12792 360 ## EF0590 polysaccharide deacetylase family protein 19 6 Op 2 . + CDS 12817 - 13905 691 ## COG0726 Predicted xylanase/chitin deacetylase + Prom 14148 - 14207 4.7 20 7 Op 1 . + CDS 14234 - 14623 380 ## COG3443 Predicted periplasmic or secreted protein 21 7 Op 2 . + CDS 14668 - 15096 324 ## COG5341 Uncharacterized protein conserved in bacteria + Term 15113 - 15151 -0.9 Predicted protein(s) >gi|284795530|gb|ADDQ01000019.1| GENE 1 191 - 910 204 239 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 227 1 237 245 83 28 1e-15 MLEVKKLTVCYNDFLALNEISLKIQEGALTGIIGPNGAGKSTLLKAMLNIIPHQGDVSIN NEDINKKLVKIAYVEQKADIDFTFPIKVKECVSMGTYAGMKVFQRIKNAEWQRVSKALEK VDMGKYSNHQIGELSGGQFQRVLLARCLAQNADFIFLDEPFVGIDLVSERIIMDTLKELK HQGKTVLIVHHDLSKVKKYFDNIILLNRNLIAHGSVESVFNEENLKKAYGDTIFIGEGE >gi|284795530|gb|ADDQ01000019.1| GENE 2 912 - 1754 786 280 aa, chain + ## HITS:1 COG:L149891 KEGG:ns NR:ns ## COG: L149891 COG1108 # Protein_GI_number: 15673299 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Lactococcus lactis # 1 276 1 276 281 346 84.0 2e-95 MLQNFINGLYDFHFLQNALITSVVIGIVSGTVGCFIILRGMSLMGDAISHAVLPGVAISY ILGINFFIGAIVFGLLASIIITFIKSNSVIKGDTAIGITFSSFLALGVILIGVANSSTDL FHILFGNILAVQDIDKWITIGVSVLVLVIVVLFFKELLITSFDPLMAKAIGMNVSFYHYL LMVLLTLVAVTAMQSVGTILIVAMLITPAATAYLYANSLKTMIFISATVGASSSLLGLFI GYSFNIAAGSSIVLTAAFLFVISFLISPKQKFLRKKERKL >gi|284795530|gb|ADDQ01000019.1| GENE 3 1751 - 2701 1014 316 aa, chain + ## HITS:1 COG:SP1650 KEGG:ns NR:ns ## COG: SP1650 COG0803 # Protein_GI_number: 15901485 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Streptococcus pneumoniae TIGR4 # 9 316 1 309 309 449 76.0 1e-126 MMRKWEAVLGSLGILIALFIFGACSINSKDKDKVASNEKLKVVVTNSILADITENIAKDK IDLHSIVPIGKDPHEYEPLPEDVQKTSKADLIFYNGVNLETGGNAWFTKLVKNANKEENK DYFAASDGIDVIYLEGQSEKGKEDPHAWLNLENGIIYAKNIEKQLAEKDPDNKKFYKENL DKYIEKLDSLDKEAKSKFASIPNDKKMIVTSEGCFKYFSKAYNVPSAYIWEINTEEEGTP DQIKHLVEKLRTTKVPSLFVESSVDDRPMKTVSKDTNIPIYSTIFTDSIAEKGQDGDSYY AMMKWNLDKIAEGLSK >gi|284795530|gb|ADDQ01000019.1| GENE 4 2716 - 2949 162 77 aa, chain + ## HITS:1 COG:no KEGG:EF0578 NR:ns ## KEGG: EF0578 # Name: not_defined # Def: iron-dependent repressor family protein # Organism: E.faecalis # Pathway: not_defined # 1 77 1 77 77 119 100.0 3e-26 MVQIKTTTILIYLLAIQELSKRKKKLKNNDLAKVLSVSPASVSEMLAKLRYEDYLDIGFQ LTDKGKKFIDDYKKGFK >gi|284795530|gb|ADDQ01000019.1| GENE 5 2979 - 3071 98 30 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAIGVIMIGLILITGYNFFKSFSDYFRKGE >gi|284795530|gb|ADDQ01000019.1| GENE 6 3077 - 3199 105 40 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSLLILVGLLFVSVILLFLISLALRNEFSNRRTIETSSPV >gi|284795530|gb|ADDQ01000019.1| GENE 7 3344 - 3862 345 172 aa, chain + ## HITS:1 COG:no KEGG:EF0579 NR:ns ## KEGG: EF0579 # Name: not_defined # Def: transcriptional regulator, putative # Organism: E.faecalis # Pathway: not_defined # 1 172 1 172 172 311 98.0 4e-84 MTAGVTTGAFYKHFTSKEALFEEIIQPHINALINMYNEEFTKYLLNLENIDIEKSWRENF NELDPFINYIFENKRIFDLVLFQSAGTKYQDIVEKITSFVTKKTVCCLDKLKTIGMINQN LVFNEEEIHFYIYSFYATFYDILKHSYSKEKTMLLTRRLYRFSVPGWIELLS >gi|284795530|gb|ADDQ01000019.1| GENE 8 3993 - 4661 285 222 aa, chain + ## HITS:1 COG:SP1437 KEGG:ns NR:ns ## COG: SP1437 COG0619 # Protein_GI_number: 15901289 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Streptococcus pneumoniae TIGR4 # 81 222 4 144 147 69 30.0 5e-12 MSKINPLTLITLNIFFPVIIFLGKGNIFQVGCFIIATVLVLMFRKIKTCIYFILIYSVLF LAMKIIDAIKIEFFTIFFGTSLYIVFRMLPVVMISWLLVSVYTSNELLSSLEKIHLPKKI MLSITVVIRFFPTYRSEIRMIKESLKMRNIRLSFFQPLQYLEFLLVPVLIRATMIAEEMT ANAITKGIESPVKRSSYYKTNMSLLDYIILFSVTIFFLSILI >gi|284795530|gb|ADDQ01000019.1| GENE 9 4672 - 6087 811 471 aa, chain + ## HITS:1 COG:MTH454 KEGG:ns NR:ns ## COG: MTH454 COG1122 # Protein_GI_number: 15678482 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Methanothermobacter thermautotrophicus # 4 448 6 462 480 250 32.0 4e-66 MFEFNNVSFSYKDVKEQALVDLNFSIKKGSLTLITGSSGSGKSTLLKLMNGLIPRLYDGK LVGEILFENNSLKSLTQESISKNIGYVSQDPRGQFFTTNTTSELVFSMENFGFTKEHMDK RINELAELLDLSNILDKNIFSLSSGERQKISIGCSLSLNSKLIILDEPSSNLDFKATKKL ADLLCDLKNKGFTIVIAEHRFYYLKELIDQVLFVKNRTVKTTTIQLLKTENNNALRKFDI FNSSIEVPYIEKASADVLKVEEITYENILKDINFDVKVGDVIGLVGKNGVGKTTLLRILM KIIRPTKGKIIENKKNLSSPFLVMQEMDYQFFTESVRSELALGNEIVSKDQQEKILKKME LYKMKDQLPFDLSGGEKQRLLVSIASLSKTNLFLFDEPTSGLDYINMERIADLIKDLKER GAVVIATHDPEFLYKTCNRIIYLKNGGIKKDIKLRVEDSTLIEQIFNDITK >gi|284795530|gb|ADDQ01000019.1| GENE 10 6105 - 6674 592 189 aa, chain + ## HITS:1 COG:no KEGG:EF0582 NR:ns ## KEGG: EF0582 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 189 1 189 189 299 97.0 4e-80 MKTKDYIFIGLATVISLVIYFFSIMISSIGGAFGHSISPGIFGLLSGIIFVYISYNYSRK GIFTIYTIVLLLFFTLMGGAYLPWFISSISTAILADIILSVFGYDRAIPQVVSWALMQLG SAAGQWIPIWFFTDRFRQDWIDRGQSAATMDAMIHYAVGIWGIISVLVVASLSMIGVLIG RKVLKKYKK >gi|284795530|gb|ADDQ01000019.1| GENE 11 6784 - 8538 215 584 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 336 556 2 226 245 87 27 5e-17 MKVYKKLFSYVPKKKCYGWLATLFSGFSVVLTVYGYYSIYKFLQSLIIVGDEYLAKSYAV QTVAWLTLGALFYIFSGLFSHILGFRLETNLRKKGISGLTGASFRFFDLNSSGYIRKTID DNAAKTHMAIAHLIPDSAQAIVTPVLSVALGFFINFKIGLVLIAMLVIGVFLLKKMTGNT NFIQKYQDSLDVLSSETVEYIRGIQVIKIFGAKVTSFKALNKAINDYAKFAYKYSLSGKT PFILFQWLFFGIVCILIVPITFFITSLTTPKILAVDLLMLFFLSGIIFVSFMRIMYVSMH LFEARYAVETLDSLYLEMKQDQLKYGNETQIKNCDIAFENVSFSYKEECVLENFNLVLEQ KRIYALVGKSGSGKSTIAKLISGFYNVDKGQIKIGGKPLNHYSKDTIINTIAFVFQDTKL FNQSIYDNVSIANPQAPASKVFDALRLAGCESILEKFPEREHTLIGSKGVYLSGGEKQRI AIARAILKDAKIVIMDEASASIDPDNEYELQKAFQYLMKEKTVIMIAHRLSSIKSVDEIL VLSEGKIVERGNHNELMAKHRVYKQLVTNYENANDWRLDNEKFL >gi|284795530|gb|ADDQ01000019.1| GENE 12 8492 - 10264 203 590 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 342 552 7 214 311 82 29 1e-15 MRMQMIGGLTMKSFYKKKFALTDQGAEALTKASISSFFVYCINMVPAFIIMMLIDELVLE NAKPHWLYFAVSFVTLLFMYWLLDREYENLYNSTYKESAHLRVQIADDLSNLPLSYFSKH NLSDLSQTIMSDVEGIEHAMSHAIPKSGGMALFFPFISVMLLVGNVKMGLAVILPTLFSF VLILLSKKSQTKANTKYYDTLRENSEEFQETIELQQEINSFNLSKKVQDRLFKKMEESER IHLKVELSTFSVMALSSIFSYVSLAVVILVGVHLLLTGEVTILYVVGYLLAAIKIKDSFD SMKEGVLEIFYLAPKIQRIRAMKETSIQEGSDSSLKSFDIELRDVSFSYDNNTPILDHIS FTAKQGEVTTLVGASGSGKTSILKLVSRLYDYDEGCILIDGYDIKRVSPASLFSKIAIVF QEVTLFNTSILENIRIGNSQASDEEVKKAARLANCEDFIEKLPDGYHTLVGENGSSLSGG ERQRLSIARAFLKNAPILILDEITASLDVENEKRIQESLNRLIQDKTVLIISHRLKSIEK VNKIVVMDQGKVVDQGTHSELYRRSEIYKNLIKKTKLSEKFVYEKEAQSR >gi|284795530|gb|ADDQ01000019.1| GENE 13 10787 - 11047 437 86 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229546432|ref|ZP_04435157.1| 30S ribosomal protein S14 [Enterococcus faecalis TX1332] # 1 86 1 86 86 172 100 1e-42 MAKKSKIAKAKKQMAMIEKYADKRQELKAAGDRTALAKLPRDSNPNRLRLRDQTDGRPRG YMRKSRIKFRELAHQGLIPGVKKASW >gi|284795530|gb|ADDQ01000019.1| GENE 14 11041 - 11241 337 66 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227554644|ref|ZP_03984691.1| 50S ribosomal protein L32 [Enterococcus faecalis HH22] # 1 66 1 66 66 134 98 4e-31 MVRGGNIMAVPARKTSKAKKRLRRTHQTVVKPEISFDEANGDYRRSHHVSLKGYYNGKKV IKGASK >gi|284795530|gb|ADDQ01000019.1| GENE 15 11272 - 11649 523 125 aa, chain + ## HITS:1 COG:no KEGG:EF0587 NR:ns ## KEGG: EF0587 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 125 1 125 125 211 96.0 8e-54 MEIIYPPLVEEGLKYYLETTQQSLDKSTFYRSMVERGIITETGLPTQQAIENGLVKDYYE DQGLSFDEFLRIYPIFEEYDKELFQCIDGYWEIPVDMKENLVSQLESGELNFEDAQQIQA YLEDR >gi|284795530|gb|ADDQ01000019.1| GENE 16 11670 - 11819 246 49 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229546435|ref|ZP_04435160.1| 50S ribosomal protein L33 [Enterococcus faecalis TX1332] # 1 49 1 49 49 99 100 1e-20 MRQNIILECVETGERLYLTSKNKRNNSERLELKKYSPKLRRRAIFKEVK >gi|284795530|gb|ADDQ01000019.1| GENE 17 11843 - 12007 177 54 aa, chain + ## HITS:1 COG:no KEGG:EF0589 NR:ns ## KEGG: EF0589 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 54 1 54 54 89 90.0 5e-17 MSIPVAIVSGFLGAGKTTLINQALQFSPYPREEIIIIENEFGEVGIDHKLKVLK >gi|284795530|gb|ADDQ01000019.1| GENE 18 12346 - 12792 360 148 aa, chain + ## HITS:1 COG:no KEGG:EF0590 NR:ns ## KEGG: EF0590 # Name: not_defined # Def: polysaccharide deacetylase family protein # Organism: E.faecalis # Pathway: not_defined # 1 148 1 148 516 254 93.0 5e-67 MSDKNTYARRSQRHKQEPDICENTNQLNEAVKSKTGNENKQPKIPKKKSNYSKYIFALFT AHILVIVATGGYIVYTLKQQEVEAQTKYETAAKNLMASIQEEQDQSGISTKIDTINDGEN KCLVYSPVYESTVPFKNANQLVDELAQK >gi|284795530|gb|ADDQ01000019.1| GENE 19 12817 - 13905 691 362 aa, chain + ## HITS:1 COG:lin0436 KEGG:ns NR:ns ## COG: lin0436 COG0726 # Protein_GI_number: 16799513 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Listeria innocua # 44 361 148 465 466 187 36.0 3e-47 MLTVARIKATAISSKIGQYRIEADSFIWDRSKENFKKLDSISEKTIYVSEKTGKEITNKD LIPDEGSLLGIQQVIQQSILDHAKELEKIIDAVLTIDRISYESKMTYTPDELTIDLPKNT TETTKVTLKYRDIAPFIDTDLVSQESIKDALPALDENKKYVALTFDDGPNNSSTLDLLNI LKTNNVKATFFMLGQMVDQNPDVAKQVHDEGHEVACHLYSHPQLNTLSTDELQSEMNKAN KANKAIFKATGVLPRNIRPPYGAIDKKSAETIGMPIIQWNIDSLDWKTRNPEAINNVVKQ NVFNGAIILIHDIHHESVKAVPGLITMLKNEGYEFVTIDQLLSGKQKPLHQYFGMNDERL VD >gi|284795530|gb|ADDQ01000019.1| GENE 20 14234 - 14623 380 129 aa, chain + ## HITS:1 COG:L136652_2 KEGG:ns NR:ns ## COG: L136652_2 COG3443 # Protein_GI_number: 15673284 # Func_class: R General function prediction only # Function: Predicted periplasmic or secreted protein # Organism: Lactococcus lactis # 48 125 3 80 194 97 61.0 7e-21 MANEAGIKLEVLNPLESLIKEQMNNGEDYVSVMEDNLKALEKTTMVAGEEVVPEKEAKDE KTVASGYFKDVDVKDPELSDYTGEWQSVYPLLKDGILDEVFDYKAKLNKDMTAAEYKDYY TTGYEIVFL >gi|284795530|gb|ADDQ01000019.1| GENE 21 14668 - 15096 324 142 aa, chain + ## HITS:1 COG:lin0431 KEGG:ns NR:ns ## COG: lin0431 COG5341 # Protein_GI_number: 16799508 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 23 138 12 131 140 86 41.0 1e-17 MKKTITILTDYLGLGKIDMKIGDVIIIGILIISSFIPLFIFSLEKGNQGTTKYAVVRING KEVDRFNLDKISHKYVKYYPAKGQYNIIEIKDGKIRDREDNSPDQIAVRTGWISNPGQTS ICLPHKLVISIEKKGSPDYYIY Prediction of potential genes in microbial genomes Time: Sun May 15 12:28:21 2011 Seq name: gi|284795529|gb|ADDQ01000020.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont54.1, whole genome shotgun sequence Length of sequence - 59242 bp Number of predicted genes - 71, with homology - 69 Number of transcription units - 19, operones - 13 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 164 - 194 1.1 1 1 Op 1 3/0.000 - CDS 200 - 1696 2279 ## COG1190 Lysyl-tRNA synthetase (class II) - Prom 1725 - 1784 4.1 - Term 1747 - 1783 4.1 2 1 Op 2 2/0.000 - CDS 1790 - 2803 554 ## PROTEIN SUPPORTED gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase 3 1 Op 3 1/0.200 - CDS 2800 - 3696 1146 ## COG1281 Disulfide bond chaperones of the HSP33 family - Prom 3794 - 3853 5.5 - Term 3790 - 3853 23.2 4 2 Op 1 11/0.000 - CDS 3858 - 6014 1338 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 - Prom 6047 - 6106 2.2 5 2 Op 2 10/0.000 - CDS 6108 - 6653 682 ## COG0634 Hypoxanthine-guanine phosphoribosyltransferase 6 2 Op 3 2/0.000 - CDS 6672 - 8060 1091 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control - Term 8079 - 8132 9.0 7 2 Op 4 . - CDS 8146 - 8625 361 ## PROTEIN SUPPORTED gi|218290661|ref|ZP_03494752.1| RNA binding S1 domain protein 8 2 Op 5 . - CDS 8670 - 9149 419 ## EF0261 hypothetical protein - Prom 9177 - 9236 5.5 - Term 9330 - 9392 11.0 9 3 Op 1 1/0.200 - CDS 9404 - 9667 370 ## COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) 10 3 Op 2 2/0.000 - CDS 9682 - 11271 1717 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 11 3 Op 3 7/0.000 - CDS 11287 - 14826 3705 ## COG1197 Transcription-repair coupling factor (superfamily II helicase) 12 3 Op 4 . - CDS 14846 - 15412 619 ## COG0193 Peptidyl-tRNA hydrolase - Prom 15480 - 15539 8.3 13 4 Op 1 . + CDS 15438 - 15530 57 ## + Prom 15628 - 15687 7.5 14 4 Op 2 . + CDS 15748 - 16731 1153 ## COG0039 Malate/lactate dehydrogenases + Term 16801 - 16859 20.0 15 5 Tu 1 . - CDS 16965 - 18455 1718 ## COG1012 NAD-dependent aldehyde dehydrogenases - Prom 18486 - 18545 14.5 - Term 18630 - 18683 13.1 16 6 Tu 1 . - CDS 18732 - 20237 1674 ## COG1705 Muramidase (flagellum-specific) - Prom 20354 - 20413 8.3 - Term 20361 - 20398 -0.7 17 7 Op 1 . - CDS 20471 - 20983 619 ## COG1827 Predicted small molecule binding protein (contains 3H domain) 18 7 Op 2 . - CDS 20994 - 21839 906 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 19 7 Op 3 . - CDS 21844 - 22557 703 ## COG0846 NAD-dependent protein deacetylases, SIR2 family - Prom 22577 - 22636 6.1 + Prom 22647 - 22706 5.7 20 8 Tu 1 . + CDS 22730 - 23026 408 ## EF0248 hypothetical protein + Term 23027 - 23078 10.6 + Prom 23428 - 23487 3.5 21 9 Op 1 16/0.000 + CDS 23585 - 25168 2084 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 22 9 Op 2 . + CDS 25180 - 25920 279 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 + Term 25921 - 25979 19.0 - Term 25915 - 25959 8.1 23 10 Tu 1 . - CDS 25965 - 26534 587 ## COG1611 Predicted Rossmann fold nucleotide-binding protein - Prom 26682 - 26741 6.7 + Prom 26628 - 26687 9.7 24 11 Op 1 . + CDS 26723 - 27214 479 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Prom 27219 - 27278 3.7 25 11 Op 2 . + CDS 27305 - 28660 1546 ## COG1114 Branched-chain amino acid permeases + Term 28673 - 28726 15.1 + Prom 28707 - 28766 3.4 26 12 Tu 1 . + CDS 28793 - 29104 535 ## COG0393 Uncharacterized conserved protein + Term 29114 - 29172 14.2 - Term 29107 - 29151 8.2 27 13 Op 1 8/0.000 - CDS 29155 - 29904 849 ## COG0101 Pseudouridylate synthase 28 13 Op 2 34/0.000 - CDS 29923 - 30717 756 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 29 13 Op 3 15/0.000 - CDS 30717 - 31586 440 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 30 13 Op 4 . - CDS 31562 - 32401 1056 ## COG1122 ABC-type cobalt transport system, ATPase component - Prom 32487 - 32546 7.4 - Term 32549 - 32591 9.1 31 14 Op 1 . - CDS 32603 - 33778 1279 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase 32 14 Op 2 . - CDS 33794 - 34993 1179 ## EF0235 hypothetical protein - Prom 35047 - 35106 7.5 - Term 35182 - 35235 1.0 33 15 Op 1 50/0.000 - CDS 35269 - 35652 618 ## PROTEIN SUPPORTED gi|29374878|ref|NP_814031.1| 50S ribosomal protein L17 34 15 Op 2 32/0.000 - CDS 35726 - 36664 1104 ## COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit 35 15 Op 3 48/0.000 - CDS 36745 - 37134 654 ## PROTEIN SUPPORTED gi|29374876|ref|NP_814029.1| 30S ribosomal protein S11 36 15 Op 4 . - CDS 37162 - 37527 606 ## PROTEIN SUPPORTED gi|29374875|ref|NP_814028.1| 30S ribosomal protein S13 37 15 Op 5 . - CDS 37547 - 37663 210 ## PROTEIN SUPPORTED gi|29374874|ref|NP_814027.1| 50S ribosomal protein L36 38 15 Op 6 6/0.000 - CDS 37696 - 37914 311 ## PROTEIN SUPPORTED gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 - Prom 38042 - 38101 7.0 - Term 37949 - 37982 2.0 39 15 Op 7 28/0.000 - CDS 38125 - 38775 789 ## COG0563 Adenylate kinase and related kinases - Term 38818 - 38854 5.7 40 15 Op 8 53/0.000 - CDS 38862 - 40160 762 ## PROTEIN SUPPORTED gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 41 15 Op 9 48/0.000 - CDS 40161 - 40601 731 ## PROTEIN SUPPORTED gi|29374870|ref|NP_814023.1| 50S ribosomal protein L15 42 15 Op 10 50/0.000 - CDS 40649 - 40828 280 ## PROTEIN SUPPORTED gi|29374869|ref|NP_814022.1| ribosomal protein L30 43 15 Op 11 56/0.000 - CDS 40843 - 41343 817 ## PROTEIN SUPPORTED gi|29374868|ref|NP_814021.1| ribosomal protein S5 44 15 Op 12 46/0.000 - CDS 41364 - 41729 599 ## PROTEIN SUPPORTED gi|227520008|ref|ZP_03950057.1| 50S ribosomal protein L18 - Prom 41766 - 41825 3.5 - Term 41797 - 41838 4.1 45 15 Op 13 55/0.000 - CDS 41881 - 42417 909 ## PROTEIN SUPPORTED gi|227520007|ref|ZP_03950056.1| 50S ribosomal protein L6 46 15 Op 14 50/0.000 - CDS 42449 - 42847 660 ## PROTEIN SUPPORTED gi|29374865|ref|NP_814018.1| 30S ribosomal protein S8 47 15 Op 15 50/0.000 - CDS 42883 - 43068 333 ## PROTEIN SUPPORTED gi|29374864|ref|NP_814017.1| 30S ribosomal protein S14 48 15 Op 16 48/0.000 - CDS 43087 - 43626 896 ## PROTEIN SUPPORTED gi|29374863|ref|NP_814016.1| 50S ribosomal protein L5 49 15 Op 17 57/0.000 - CDS 43652 - 43963 517 ## PROTEIN SUPPORTED gi|29374862|ref|NP_814015.1| 50S ribosomal protein L24 50 15 Op 18 50/0.000 - CDS 43999 - 44367 591 ## PROTEIN SUPPORTED gi|29374861|ref|NP_814014.1| ribosomal protein L14 51 15 Op 19 50/0.000 - CDS 44425 - 44712 476 ## PROTEIN SUPPORTED gi|227520001|ref|ZP_03950050.1| 30S ribosomal protein S17 52 15 Op 20 50/0.000 - CDS 44715 - 44903 296 ## PROTEIN SUPPORTED gi|29374859|ref|NP_814012.1| ribosomal protein L29 53 15 Op 21 50/0.000 - CDS 44893 - 45327 753 ## PROTEIN SUPPORTED gi|29374858|ref|NP_814011.1| 50S ribosomal protein L16 54 15 Op 22 61/0.000 - CDS 45330 - 45986 1112 ## PROTEIN SUPPORTED gi|29374857|ref|NP_814010.1| 30S ribosomal protein S3 55 15 Op 23 59/0.000 - CDS 46053 - 46406 564 ## PROTEIN SUPPORTED gi|227519997|ref|ZP_03950046.1| 50S ribosomal protein L22 56 15 Op 24 60/0.000 - CDS 46422 - 46700 486 ## PROTEIN SUPPORTED gi|29374855|ref|NP_814008.1| 30S ribosomal protein S19 57 15 Op 25 61/0.000 - CDS 46743 - 47573 1431 ## PROTEIN SUPPORTED gi|29374854|ref|NP_814007.1| 50S ribosomal protein L2 58 15 Op 26 61/0.000 - CDS 47613 - 47903 471 ## PROTEIN SUPPORTED gi|29374853|ref|NP_814006.1| ribosomal protein L23 59 15 Op 27 58/0.000 - CDS 47903 - 48526 1033 ## PROTEIN SUPPORTED gi|227519993|ref|ZP_03950042.1| 50S ribosomal protein L4 60 15 Op 28 40/0.000 - CDS 48552 - 49181 1059 ## PROTEIN SUPPORTED gi|29374851|ref|NP_814004.1| 50S ribosomal protein L3 61 15 Op 29 . - CDS 49203 - 49547 575 ## PROTEIN SUPPORTED gi|227519991|ref|ZP_03950040.1| 30S ribosomal protein S10 62 15 Op 30 . - CDS 49579 - 49650 62 ## - Prom 49678 - 49737 7.5 - Term 49793 - 49849 12.9 63 16 Op 1 . - CDS 49862 - 51028 1231 ## COG2230 Cyclopropane fatty acid synthase and related methyltransferases - Prom 51178 - 51237 7.0 - Term 51251 - 51285 -0.3 64 16 Op 2 . - CDS 51300 - 52124 959 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase - Prom 52187 - 52246 4.2 - Term 52211 - 52253 6.8 65 17 Op 1 30/0.000 - CDS 52306 - 53493 1486 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 - Prom 53574 - 53633 7.2 66 17 Op 2 51/0.000 - CDS 53644 - 55725 2264 ## COG0480 Translation elongation factors (GTPases) - Prom 55748 - 55807 1.9 67 17 Op 3 56/0.000 - CDS 55809 - 56279 806 ## PROTEIN SUPPORTED gi|29374845|ref|NP_813998.1| 30S ribosomal protein S7 68 17 Op 4 . - CDS 56335 - 56748 706 ## PROTEIN SUPPORTED gi|29374844|ref|NP_813997.1| 30S ribosomal protein S12 - Prom 56904 - 56963 5.1 + Prom 57007 - 57066 3.9 69 18 Op 1 . + CDS 57093 - 57773 899 ## COG0120 Ribose 5-phosphate isomerase 70 18 Op 2 . + CDS 57815 - 58390 672 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs + Term 58391 - 58445 12.5 + Prom 58461 - 58520 5.9 71 19 Tu 1 . + CDS 58565 - 59240 758 ## COG0588 Phosphoglycerate mutase 1 Predicted protein(s) >gi|284795529|gb|ADDQ01000020.1| GENE 1 200 - 1696 2279 498 aa, chain - ## HITS:1 COG:BS_lysS KEGG:ns NR:ns ## COG: BS_lysS COG1190 # Protein_GI_number: 16077150 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Lysyl-tRNA synthetase (class II) # Organism: Bacillus subtilis # 1 498 1 497 499 710 72.0 0 MAEEQQAHLEDLNDQMLVRREKMEALREEGIDPFGKRFDRTHNSAELHEQYDNHTKEELS EMNTEVSVAGRMMTKRGKGKAGFAHLQDREGQIQIYVRKDQVGDEAYELFKHADLGDFFG VTGQVMKTNTGEVTVKAQTITLLTKALRPLPDKYHGLTNVEQRYRQRYLDLISNKESFDR FMKRSQIISEIRRYLDGNGYVEVETPVLHNEAGGAAARPFITHHNALDMDLYLRIALELH LKRLIVGGMEKVYEIGRVFRNEGIDTTHNPEFTMLEAYTAYTDYQDVMDLTEGIIRNAAE KVLGTTDITYDGQAVDLGSPFKRLHMVDAVKEQTGVDFWQEMTIEEARALAKEHNVEITD AMTVGHIINEFFETFVEDTLQQPTFIYGHPVAVSPLAKKNPEDGRFTDRFELFIIGKEFA NAFTELNDPIDQRERFEEQEKEREQGNDEAHGVDEDFIEALEYGLPPTGGLGIGIDRLVM LLTDAQSIRDVLLFPTMR >gi|284795529|gb|ADDQ01000020.1| GENE 2 1790 - 2803 554 337 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase [Haemophilus influenzae R2866] # 1 327 22 347 353 218 37 8e-56 VGGKTMWKIGDVEIPNRVVVAPMAGISNAAFRVTVKEFGAGLVVCEMISDKGIKLRNKKT LEMLYIDEREYPLSVQIFGGDKETLVEAAKFVEENTQAAIIDINMGCPVNKIIKAEAGAK WLLDPNKVHEMVHAVSSAVSLPVTVKMRTGWDEDHLYAVDNALAAEQAGASAIAMHGRTR VQMYEGTANWDVLKEVKKHLTIPFMGNGDVKTPEDAKRMLEYVGADGVMIGRAALGNPWM IQRTKEYLETGELMPEPSPAEKINIAKVHLQRLVDLKGEKIAVREFRQHASYYLKGISRA AKVKVAINQVETQQAVVDLLDAFVEKISKVAVTTIEE >gi|284795529|gb|ADDQ01000020.1| GENE 3 2800 - 3696 1146 298 aa, chain - ## HITS:1 COG:BS_yacC KEGG:ns NR:ns ## COG: BS_yacC COG1281 # Protein_GI_number: 16077139 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Disulfide bond chaperones of the HSP33 family # Organism: Bacillus subtilis # 3 293 2 291 291 349 57.0 4e-96 MEDYLVKALCYKGSIRAYAISATETVSEAQRRHDTWSSSTAALGRTLIGALLLGATLKGD DKLTVKVQGNGPAGAIIVDSNGRGETKGYIKNPHVSLKLNATGKIDVRGAVGNEGIFTVI KDLGLKETFSGQTPIVSGEIGEDFTYFMAVSEQVPSAIGLGVLVDTDESVKAAGGFMIQV MPGADESAIDFIEQRLAEVPPISQLLENGETPEQVLYRLLGEDEVEILEKMPVQFKCDCS KEKFATALIAVGIDELNAMIDEDHGAEAVCQFCNNKYHYSEEELIELRDEAIRNTKQK >gi|284795529|gb|ADDQ01000020.1| GENE 4 3858 - 6014 1338 718 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 122 659 94 635 636 520 50 1e-146 MNKKNNGMKNGLYYVLVVLAMVMVVYFIFGNNDQQSPDIDYSTFQQQLEDGKVKDMTIQP TNGVYRIEGQYKEKQEVKDTGGLSLWGSTQASSKGFTTTVLPSDTTLAGIQDAAQNNKVK LVVKEQSTSGAWLSLLFSFLPLVIIFFFFYMMMSQQGGGGGGGGRVMNFGKSKAKEADKK ANRVRFSDVAGAEEEKQELVEVVEFLKDPRRFAELGARIPAGVLLEGPPGTGKTLLAKAV AGEAGVPFYSISGSDFVEMFVGVGASRVRDLFETAKKNAPAIIFIDEIDAVGRQRGAGMG GGHDEREQTLNQLLVEMDGFDGNEGVIVIAATNRSDVLDPALLRPGRFDRQILVGRPDVK GREAILRVHAKNKPLADDVDLKVVAQQTPGFAGADLENVLNEAALVAARRNKKKIDASDV DEAEDRVIAGPAKKDRVINKKEREMVAYHEAGHTIVGLVLSRARVVHKVTIIPRGRAGGY MIALPKEDQFLMTKEDMFEQIVGLLGGRTAEEIIFGVQSTGASNDFEQATGIARSMVTEY GMSDKLGPVQYEGNHQVFVGRDYGQTKAYSEQVAFEIDQEVRRILMDAHTKAHEIIEAHR EQHKLIAEKLLEYETLDAKAIKSLFETGKMPEGADSDYPSEKEAQTFEEAKRALEEKEAQ KQVEEKQDFEEAKKELHDEAEEVKVESEQTEKEVQSEEKKDSDSNSEYDRNNYEDRYK >gi|284795529|gb|ADDQ01000020.1| GENE 5 6108 - 6653 682 181 aa, chain - ## HITS:1 COG:lin0251_2 KEGG:ns NR:ns ## COG: lin0251_2 COG0634 # Protein_GI_number: 16799328 # Func_class: F Nucleotide transport and metabolism # Function: Hypoxanthine-guanine phosphoribosyltransferase # Organism: Listeria innocua # 2 178 1 177 179 256 74.0 1e-68 MIEKDIEKVLISKEEILAKSAELGKQLTEEYQGKNPLVVGILKGAVPFMADLTREINTYL ELDFMDVSSYGNATVSSGEVKIVKDLDTNVEGRHILIVEDIIDSGRTLAYLVDLFRYRKA ASVKIVTLLDKPEGRVVDIKADYVGFDVPNEFVVGYGLDYAETYRNLPYIGVLKPEVYES N >gi|284795529|gb|ADDQ01000020.1| GENE 6 6672 - 8060 1091 462 aa, chain - ## HITS:1 COG:SPy0013 KEGG:ns NR:ns ## COG: SPy0013 COG0037 # Protein_GI_number: 15674260 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Streptococcus pyogenes M1 GAS # 2 443 4 407 428 201 31.0 2e-51 MFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTLMEQVAEKEQLQLVVAHVNHQLRE ASAQEAQYLATYCQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMT AHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYPKEELYQFAQRQAFV YFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSE AVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQ PQGSVMLEQQWQLAKSYDWLCLEQKQVALREEVTHLLVPGAGIYLSETEWLGLIATDKPF PLPEEINQWTGQLLAIPLTTATPLTVRHRQSGDRITLKPGFTKKLSRVFIDQKVPNEARE SAWVITDEQEEIIWVPKFANSYLSIPLETDKIHYRLLFKTKE >gi|284795529|gb|ADDQ01000020.1| GENE 7 8146 - 8625 361 159 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|218290661|ref|ZP_03494752.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius LAA1] # 1 159 1 134 134 143 49 2e-33 MSIEVGAKLPGKVSGITNFGAFIDLGEGKTGLVHISEVSNGFVKDIHDVLTVGDEVTVKV TSVGDDGKIGLSIRKAQEPAEGQQPKREFQRRENNYENRDRNPRAGGKKPFNKPQANNNN NKQDFDSLMSSFLKDSDDRLSSLKRNTEGKRGGRGGRRG >gi|284795529|gb|ADDQ01000020.1| GENE 8 8670 - 9149 419 159 aa, chain - ## HITS:1 COG:no KEGG:EF0261 NR:ns ## KEGG: EF0261 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 159 1 159 159 199 100.0 2e-50 MGKNEKNSKKVAALENDYTKEQYVEFQKQQKQLIFRRRRLAAIFLVAFIIFAFSGIQLMK DYHRLGAFKQERADAIAESVAVDKKVKDLKKDVALLKDDDYVAKLARSRFLLSKEGEQIY PTPEQMKKTQTSGAEESKSSSEKNSQSQSSTETTKSSAE >gi|284795529|gb|ADDQ01000020.1| GENE 9 9404 - 9667 370 87 aa, chain - ## HITS:1 COG:L1001 KEGG:ns NR:ns ## COG: L1001 COG1188 # Protein_GI_number: 15671997 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) # Organism: Lactococcus lactis # 1 87 17 103 105 97 71.0 7e-21 MRLDKFLKVSRIIKRRTVAKEVADKGRIQINGVLAKSSSTVKIGDLVKIQFGNRILEVEV LQLNDSTKKEDATKMYEIKSETRVSEE >gi|284795529|gb|ADDQ01000020.1| GENE 10 9682 - 11271 1717 529 aa, chain - ## HITS:1 COG:lin0247 KEGG:ns NR:ns ## COG: lin0247 COG2244 # Protein_GI_number: 16799324 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Listeria innocua # 1 527 1 524 529 300 36.0 5e-81 MAQKEMQRMMQGAVVLTIASFIAKVLSAFYRVPFQNFVGDEGFYVYQQVYPIYGIAMTLA LSGLPQFISKIVAEQPDIRSQKQVLRQLYPYVLWLAIACWAFFFFGSQEIAISMGDAALQ PLMEVVSFTFLLVPILSFYRGNFQGHLLMVPSGISQVMEQFVRVGVILVAALSYHYFGGS IYQTGTVAMSGALAGGVLAVLVLWYYNRKILSGSTEYLHQWKIMPQTTGLFKRLMIEGGL VSLYSAFLILFQLIDSFKVKNALMLFGLSDLAAKVDKGVYDRGQPLVQLGLVIALALSST FLPGLTKYFMKKDRQQFLQVAKIFLRLTTTLASAASIGLMMLLPYMNFTLFKDYKGNDVL GVYVLSIAFMAIIQAYQSIEQSRNRFKGPLVAAGVGLLVKLLTTGFFTIRWGTLGASWST ILGLLATLFVLVRQSDAAINCFVRERSFLKKLLLSLAIMMLSLLVYQGIISILFQGVHHR SQAFFVTVLGVAVGGTVFISTIIKLELFTIREWLSLPYGAKILRMRQKK >gi|284795529|gb|ADDQ01000020.1| GENE 11 11287 - 14826 3705 1179 aa, chain - ## HITS:1 COG:lin0246 KEGG:ns NR:ns ## COG: lin0246 COG1197 # Protein_GI_number: 16799323 # Func_class: L Replication, recombination and repair; K Transcription # Function: Transcription-repair coupling factor (superfamily II helicase) # Organism: Listeria innocua # 27 1166 28 1168 1179 1183 53.0 0 MNIIERISQTEIAKSWRSQLMTTGTRQLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLY YANQLVDDFLNILPSEQVHLFPVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVP VAGLRKYLPTKETWQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIV DVYPLNAEYPVRVELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMT RLQDALEKRLATAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLYQQKTTLLDYL PENSLLFVDDYSRMMETEREIAREEAEWQTLKIEEMRVFSEQTFGVDFHDQLRKTARNTT FFSLFQKGMGNLRFQEVHNFQYRSMQQFFGQMPLLKAEVDRWQKQNQTVVVFVPTKERIQ KVEELFQDFDIPSVVSNWDQLLDGHVQIVQGALQTGFELPKNKLVAITEKEIFHTTTKKR ARRQTISNAERLKSYSDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDDKL FIPVTQLNLIQKFVASESKTPKINKLGGSEWTKTKRKVASKIEDIADDLILLYATRESEK GYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVAL RAAFKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFPVEIGLLSRFRTKKQQNETIEKI KHGQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPI PRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRV DTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPN ANTLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTEL GSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVARKQGKNIQDQKTSVE IDLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYEELEADLLDRFGEYPDEVAHLLTT GRIKMDGDRALLESIRKRDQKVKFVLSKIGTKTYSVEQLFEALSATSLKADLAVEKEQMT ISLKLPKDCKEAVWIQEIAAFTTALRQEKYKHSQETDSL >gi|284795529|gb|ADDQ01000020.1| GENE 12 14846 - 15412 619 188 aa, chain - ## HITS:1 COG:SP0005 KEGG:ns NR:ns ## COG: SP0005 COG0193 # Protein_GI_number: 15899954 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptidyl-tRNA hydrolase # Organism: Streptococcus pneumoniae TIGR4 # 2 187 3 189 189 223 57.0 2e-58 MKVIVGLGNPGSKYKETKHNIGFITLDEIAYRQNVSFNNSNFEADIAEFFIGTEKVLLVK PLTFMNESGRSVGPLLTYFGADEEDLIVIYDDLDLEVGKIRLRQKGSAGGHNGIKSLIAH LGTNVFPRIKIGIGRPSKNDTVIHHVLSTFPKETHEEMLLAVKKAADAALYACEGHTFVE TMNQFNGK >gi|284795529|gb|ADDQ01000020.1| GENE 13 15438 - 15530 57 30 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPTQNGWEAYALPSFIHYTIEIKKLAVFED >gi|284795529|gb|ADDQ01000020.1| GENE 14 15748 - 16731 1153 327 aa, chain + ## HITS:1 COG:SPy1151 KEGG:ns NR:ns ## COG: SPy1151 COG0039 # Protein_GI_number: 15675128 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Streptococcus pyogenes M1 GAS # 6 326 3 324 327 473 75.0 1e-133 MTAAAGNKDHQKVILVGDGAVGSSYAFALVTQNIAQEVGIIDINVPKTEGDALDLSHALA FTSPKKIYAATYDDCHDADLVVLTAGAPQKPGETRLDLVHKNLKINKEIVTTIVDSGFNG IFLVAANPVDILTYSTWKFSGFPKERVIGSGTSLDSARFRQAIAELVDVDARNVHAYILG EHGDTEFPVWSHANVAGLQIYEWVKNNPDVDEEAMVNLFFNVRDAAYTIIEKKGATFYGI AVALARITKAILNDENSVLPLSVYLEGEYGQNDIYIGAPAIINRQGVKQVIEIPLTDAEQ EKMEASASALKEVIETAFAKFEAEEAK >gi|284795529|gb|ADDQ01000020.1| GENE 15 16965 - 18455 1718 496 aa, chain - ## HITS:1 COG:FN0454 KEGG:ns NR:ns ## COG: FN0454 COG1012 # Protein_GI_number: 19703789 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Fusobacterium nucleatum # 6 496 1 491 491 622 60.0 1e-178 MSKKEINQVVASSYQLYINGEWTTGSGNKMIASYNPSNGEKLAEFVDATNADVDRAVEAA QEAFQTWKDVDVVTRSNLLLKIADLIEENQEHLAMVETLDNGKPLRETQSIDVPASADHF RYFASVIRGEEGSVKEFDKDTLSIVVKEPIGVVGQIIPWNFPLLMGAWKLAPALAAGNTV VIHPSSSTSLSLLELFKIFDQVLPKGVVNLITGRGSDSGNYMLAHPGFDKLAFTGSTEVG YTVAKAAADRLIPATLELGGKSANIIFEDANWERALEGVQLGILFNQGQVCCAGSRVFVQ SGIYDQFVEALKEKFEQVNVGFPWEKDVEMGAQINEHQLEEILKYVEIGVKEGATLITGG QRLTENGLDKGAFLAPTLLANGTNTMCVAQEEIFGPVATVIKFETEEEVIRLANDSEYGL GGAVFSQDINVALRVARGVRTGRMWVNTYNQLPAGAPFGGYKKSGIGRETHKSMLDAYTQ MKNIYIVTKEEADGLY >gi|284795529|gb|ADDQ01000020.1| GENE 16 18732 - 20237 1674 501 aa, chain - ## HITS:1 COG:SA2437_1 KEGG:ns NR:ns ## COG: SA2437_1 COG1705 # Protein_GI_number: 15928230 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Staphylococcus aureus N315 # 51 364 185 475 502 154 34.0 4e-37 MKKQFALFSTLLLLGSSMPVGAFAEGNNLVAENSSVAETTAEATTAEDTETTATSETTEA TEESTTETESSTESSESATTESTETSGTETTDSTTDSTSTSTTESTTDSTSTSTTESTTD STSTSTTESSTTPTTTPSSSKEQPKPGTSTSESKQPAKPVTPTAPAEKPVEQPVASTPQP EIVPPVTNETVGLVEDDETFTVSKTKKTEEFIQEIGESARKVAKDKNLYASVMIAQAILE SGSGNSKLSQKPNYNLFGIKGDYKGQSVSFITYEDNGFGNLYTVEAKFRQYPTYKESMED YAKLLKNGLDSNKDFYHGVWKTEAKSYKEATRFLTGKYATDKDYHKKLNALIKTYDLTYY DKEKATVEPMESNFPAYNGKNYDTFNSYAWGNCTQYVYNRITQLGKRVDLTMGNGQDWGE TGRARGYKVSRTPKAGAAVSFPAGVLGADNTYGHVAFVEKVFKDGSILISEMNVKGLNVV STRTISADETHLMNYIVPKDK >gi|284795529|gb|ADDQ01000020.1| GENE 17 20471 - 20983 619 170 aa, chain - ## HITS:1 COG:SPy1427 KEGG:ns NR:ns ## COG: SPy1427 COG1827 # Protein_GI_number: 15675342 # Func_class: R General function prediction only # Function: Predicted small molecule binding protein (contains 3H domain) # Organism: Streptococcus pyogenes M1 GAS # 1 170 1 172 173 135 41.0 3e-32 MDGEIRRREIVKRLRETEKPISATRFAKAFDVSRQIIVGDVALLRATGVEIVATARGYML EQPLEGIERKIACQHTPEQTREELSVIVAKGGEVVDVSIAHPLYGELIGSLRIQSEKDID KFMDKYQKEHATLLSVLTGGVHLHTIRCADEETFQEIKEALRKKSILFEG >gi|284795529|gb|ADDQ01000020.1| GENE 18 20994 - 21839 906 281 aa, chain - ## HITS:1 COG:ylaD KEGG:ns NR:ns ## COG: ylaD COG0110 # Protein_GI_number: 16128443 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Escherichia coli K12 # 6 185 3 183 183 216 57.0 3e-56 MEEFKSEKEKMIAGALYFASDPELVADRKKAREQMALINQQPDTYIRRQLIEETFGKVGV GTYIEPMIQFDYGYNISVGKNFYANFNNVFLDVCPIEIGDNCMFGPNVQLYTAEHPLQAA KRNSGMESGKRIIIGNNVWIGGGAIVLPGVTLGDNVVVAAGAVVTKSFPENCVIAGNPAR IIKELTEDDAPTTSLEQQRAKINQIDKELVRLLEQRMDVVAEIAAVKKKAGHAVFDSERE QQVLETILNHVENAEYEETLSETFQGIMDASKRFQEKHLGE >gi|284795529|gb|ADDQ01000020.1| GENE 19 21844 - 22557 703 237 aa, chain - ## HITS:1 COG:lin2882 KEGG:ns NR:ns ## COG: lin2882 COG0846 # Protein_GI_number: 16801942 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Listeria innocua # 17 233 12 229 229 268 55.0 8e-72 MQDITQAEAIHWLATQQKITFLTGAGISTASGVPDYRSLKGVYQGIQQPEYLLSRTCLKT EPEKFYQFVKTLYHPDAQPNIIHQKMAQLEQMKRGKIVSQNIDGLHRKAGSQEVVDFHGN LYECYCQTCGATVPWQDYLLSDRHADCHGQIRPAITLYEEGLSEEAIEKAIQAVASADLI VIVGTSFQVHPFCDLIHYKQPTAAILAINQTPLFLQQPYYFLEAKAETIFAELTIKE >gi|284795529|gb|ADDQ01000020.1| GENE 20 22730 - 23026 408 98 aa, chain + ## HITS:1 COG:no KEGG:EF0248 NR:ns ## KEGG: EF0248 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 98 1 98 98 134 100.0 1e-30 MVAFIIYWAAIIACIAWGVLSIWFSVFYLSRKENGNLWAFAFFNVIAIIALAIVLLVYKT WDFGILTYSSLIYTILASLGVLTVLQAILGREPKAVKA >gi|284795529|gb|ADDQ01000020.1| GENE 21 23585 - 25168 2084 527 aa, chain + ## HITS:1 COG:SP0453_1 KEGG:ns NR:ns ## COG: SP0453_1 COG0834 # Protein_GI_number: 15900370 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Streptococcus pneumoniae TIGR4 # 11 330 8 325 325 300 50.0 5e-81 MNKKVFSFSLLLVTLFSLLGMTTNASAEENGEFRVGMEAGYAPFNWSQKNDAHGAVPIQG NSYAGGYDVQISKKIADGLGRKLVIVQTKWDGLAPALQSGKIDAIIAGMSPTAERKKEIA FTNPYYESQFVVIVKKDGKYANAKSLKDLADAKITAQLNTFHYGLIDQIPNVNKQQAMDN FSAMRTALASGMIDGYVSERPEGITATSVNKELKMLEFPKENGFDASAEDSQVAVGMRKG DPDIEKVNKILAGISQDERTKIMDQAIKDQPAATDSDEQKTGLINDFKNIWNQYGDMFLR GAGLTLFIALIGTVVGTTLGLLIGVFRTIPDSENPVARFFQKLGNLILSIYIEVFRGTPM MVQAMVIFYGLALAFGISLDRTVAALFIVSVNTGAYMSEIVRGGIFAVDKGQFEAAQAIG MTHGQTMRKVVIPQVLRNILPATGNEFVINIKDTAVLSVIGVADLFFQGNAASGANFQFF QTFTIVGIMYLVMTFVITRILRVVERKMDGPSAYVKVEELTEEGKES >gi|284795529|gb|ADDQ01000020.1| GENE 22 25180 - 25920 279 246 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 226 1 223 305 112 30 6e-24 MSAIIEIEHLRKSFGENEVLKDINMNVNKGEVVTIIGSSGSGKSTLLRCINLLEKPTDGK IIYNGKNVLERGYSLPKYRTHLGMVFQSFNLFNNMNVLENCTSGQMTVLKRNKEEAKKIA LENLEKVGMARFIDAKPAQLSGGQKQRVAIARALSMDPDVLLFDEPTSALDPEMVGEVLK TMKNLAHTGLTMVIVTHEMEFARDVSDRVIFMDKGVIAEEGTAEDIFVHPKEARTKEFLH RILTKN >gi|284795529|gb|ADDQ01000020.1| GENE 23 25965 - 26534 587 189 aa, chain - ## HITS:1 COG:FN0535 KEGG:ns NR:ns ## COG: FN0535 COG1611 # Protein_GI_number: 19703870 # Func_class: R General function prediction only # Function: Predicted Rossmann fold nucleotide-binding protein # Organism: Fusobacterium nucleatum # 2 187 4 189 192 205 51.0 5e-53 MKKMAVYCGASLGNEPIYQQAAVALASWMKENHYDLVYGGGNVGLMGTVADTLLAEGGEV IGVMPTFLMEREIAHNGITKMHTVSDMHARKKKMIELADVYLALPGGPGTLEEISEVISW GRVGEHMNPCILYNVNGYYDLLAAFFDKMVETNFLTAADRAKIFISDSLEEIGAFIDSYE PPMIRQYKK >gi|284795529|gb|ADDQ01000020.1| GENE 24 26723 - 27214 479 163 aa, chain + ## HITS:1 COG:lin2246 KEGG:ns NR:ns ## COG: lin2246 COG0454 # Protein_GI_number: 16801311 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Listeria innocua # 5 161 1 157 157 106 35.0 2e-23 MSTSLTIRLVAEADWPALHALDQIIWTKKNTPAEIQPLSLAAYQEKMKDETIFVAISGQQ LAGFIEVHPPTSLAAHQKQWLLSIGVSPDFQGQGIGGSLLSYVKDMAQISGIHKLSLRVM ATNQEAIRFYEKHGFMQEAHFKEEFYINGHYCDDYQYAYFIEK >gi|284795529|gb|ADDQ01000020.1| GENE 25 27305 - 28660 1546 451 aa, chain + ## HITS:1 COG:SA0180 KEGG:ns NR:ns ## COG: SA0180 COG1114 # Protein_GI_number: 15925890 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Staphylococcus aureus N315 # 1 428 1 428 449 458 60.0 1e-129 MQKKLVWRDYLYVGSMLFGLFFGAGNLIFPVHMGQEAGASVFLANLGFLATGIGLPFLGV IAMGVSKSSGVFDLASRINRRYALIFTLLLYLTIGPFFALPRLATTSFEIGLAPFVPKDL QWLVLAGFSALFFLAVWLFSRKPSKILDYVGKFLNPLFLALLGILIVLAFVKPLGHVASA AVGENYISSPFFKGFTEGYNTLDALASLAFGIVVVSTLRNMGVEKPGDIAKGMIKSGAFS VVLMGIIYTLLAYMGTMSIGAFPISENGGIALAQIANYYLGLPGSILLAFIVVLACLKTG IGLSTAFSETFEEMFPKVSYQKFLAIVVILPAIFANVGLTNIIQFAVPVLMFLYPLAITL MLLVIISPIFKHRREVYQATTYITLIAAVLDALNSSPAFIKDTAFVTTLLEKAGQYLPLF TIGMGWVVPATVAFLISWVWVMISKKDPILD >gi|284795529|gb|ADDQ01000020.1| GENE 26 28793 - 29104 535 103 aa, chain + ## HITS:1 COG:L158972 KEGG:ns NR:ns ## COG: L158972 COG0393 # Protein_GI_number: 15672916 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 101 5 104 108 92 53.0 1e-19 MLVTTTERISGQEYEIIGEVFGLTTRSKNMFKDLGAGLKSVVGGEIKGYTDMQREARDQA IERLKAEASKLGADAVVMMRFDSGTIGTDMQSVVAYGTAVKYI >gi|284795529|gb|ADDQ01000020.1| GENE 27 29155 - 29904 849 249 aa, chain - ## HITS:1 COG:SP1599 KEGG:ns NR:ns ## COG: SP1599 COG0101 # Protein_GI_number: 15901439 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Streptococcus pneumoniae TIGR4 # 1 248 1 248 249 320 63.0 2e-87 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGHSVTVFGSGRTDAGVHAMG QVIHFDYPQERPLEKMRFALDTQTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIGKP RSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHVNK TGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPEGL YLAEVKYEN >gi|284795529|gb|ADDQ01000020.1| GENE 28 29923 - 30717 756 264 aa, chain - ## HITS:1 COG:lin2783 KEGG:ns NR:ns ## COG: lin2783 COG0619 # Protein_GI_number: 16801844 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Listeria innocua # 1 249 2 250 266 318 63.0 6e-87 MNKLIFGRYIPGDSFIHRLDPRAKLLASFYFIGIIFLANNWQSYVLIAAFTAFAISLSKI SARFFIRGVRPLLWLILFTVALQTLFTQGGEVYFQWGIISITQFGVTNGLFIFCRFVLII FMSTLLTLTTAPLELSDAIEYLLRPLRVVKFPVHEVSLMLSIALRFVPTLMDETEKIMNA QRARGVDFGEGNLLQKMKAIVPLLIPLFVSSFNRAEDLATAMEARGYQGGEGRTKYRILH WHLRDTIVMFGFVLLTIGLFVLRT >gi|284795529|gb|ADDQ01000020.1| GENE 29 30717 - 31586 440 289 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 5 278 132 396 398 174 38 1e-42 MDIRFKQVDFTYQPNTPFEQRALFDINLTIQDGSYTAIVGHTGSGKSTLLQHLNALVKPT KGQVTIGERVITPETDNKNLKPIRKKVGIVFQFPEAQLFEETVERDIAFGPKNFGVSDEE AKKLAKKMLDLVGLDEKYLQHSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKG RKEMMEMFSRLHKEHNMTIVLVTHLMDDVANYADHVIVLEKGQIVRAGAPQEVFQETQWL KEKQLGVPTAAEFAEKLVAKGFSFEQLPLTADQLADQLLKKMQEAGEAK >gi|284795529|gb|ADDQ01000020.1| GENE 30 31562 - 32401 1056 279 aa, chain - ## HITS:1 COG:L75718 KEGG:ns NR:ns ## COG: L75718 COG1122 # Protein_GI_number: 15672259 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Lactococcus lactis # 1 272 1 272 277 317 58.0 2e-86 MQPIIELNNIQFNYQPEDASPALKDVSFSIQQGEWVAIIGHNGSGKSTLAKTINGLLLPA AGTIKVGGKELNEANVWDIRRMVGMVFQNPDNQFVGSTVEDDVAFGLENQGIPRDEMVER VHDALERVRMLDFAKREPARLSGGQKQRVAIAGVVALRPDIIILDEATSMLDPEGRAEVI ATIQKIKEESNLTVISITHDIDEAANANRILVMRQGQLTNEGTPEKIFSAGEALVEMGLD LPFPEKLKVALKERGVVVPTNYLTEEGMVDWLWTSVLNK >gi|284795529|gb|ADDQ01000020.1| GENE 31 32603 - 33778 1279 391 aa, chain - ## HITS:1 COG:lin0542 KEGG:ns NR:ns ## COG: lin0542 COG1473 # Protein_GI_number: 16799617 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Listeria innocua # 3 387 4 388 393 563 71.0 1e-160 MKKIKALVKQHAQEMIAFRRDLHQHPELQFEEFRTTEKVAAVLDQLGITYRKTEPTGLIA EIVGGKPGRVIALRADMDALPVQELNEDLAYKSLEAGKMHACGHDSHTAMLVTAAKVLKE IQEELQGTVRLIFQPSEENAQGAKAMVAQGAMTGVDDVFGLHIWSQMPVGTASCRVGSSF ASADIFSVDFTGRGGHGAMPNACIDAAVIASSFVMNLQTIVSRETDPLDPVVVTIGRMDV GTRFNVIAENARLEGTVRCFSVATRNRVEQALQRYAEQTAAIYGGTASLDYQYGTLPVIN DEQDALFAQTLIKENFGEAALRQEEPTTGGEDFSYYTEHASGCFALVGSGNPEKDTEWAH HHGRFNIDEDAMAMGAELYAQYAFEYLKTHF >gi|284795529|gb|ADDQ01000020.1| GENE 32 33794 - 34993 1179 399 aa, chain - ## HITS:1 COG:no KEGG:EF0235 NR:ns ## KEGG: EF0235 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 399 1 399 399 659 100.0 0 MSQMFAFSLLMVILYIGDVVSIKTKAWIPSVFVCGVLFILGYWTIFPQNIVEVAGIPTVV ATLLMYLLITNMGTLLSVKELVNQWKTIVIALSGILGIIALLLAVGTFVFDLKTVLVAIP PLVGGLVSSLVMSEAAQSAGLASLSVLAILIYVIQGFAGYPLTSIVLKKEGKRKLQEYRA GTWQPVHEQEGQETGAEPDVPKLFEKVPKRYHTDYSRILRLALVATLAYYVSVWTAPFVT ISPFVLCLCFGVIATSLGFLEKQPLQKANSFGFAILGLMLFVFDGLKQATPEMLMDLFLP MIGIIVIGVIGMYIFSAIVGRVLGVSKEMAFAVSLTALYGFPADYIITNEVIQSLTEDEQ EQAALTSHLMPPMLVAGFVTVTIVSVILAGIFSSILLSL >gi|284795529|gb|ADDQ01000020.1| GENE 33 35269 - 35652 618 127 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374878|ref|NP_814031.1| 50S ribosomal protein L17 [Enterococcus faecalis V583] # 1 127 1 127 127 242 99 3e-63 MSYRKLGRTSSQRKAMLRDITTDLIINERIVTTEARAKEVRSTVEKMITLGKRGDLHARR QAATFVRNEVASVREEDESIVVESALQKLFNDLGPRFAERQGGYTRILKTEPRRGDAAPM VVIEFVK >gi|284795529|gb|ADDQ01000020.1| GENE 34 35726 - 36664 1104 312 aa, chain - ## HITS:1 COG:BS_rpoA KEGG:ns NR:ns ## COG: BS_rpoA COG0202 # Protein_GI_number: 16077211 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, alpha subunit/40 kD subunit # Organism: Bacillus subtilis # 1 312 1 314 314 431 74.0 1e-121 MIEFEKPRIEKIDENRDYGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAITNIQIDGVL HEFSTIPGVREDVTQIILNIKGLALKLYAEEEKTLEIDITGPATVTAGDIIVDSDVEILN KDLVICSVAEGATFHARLTVKPGRGYVQADENKKEDMPIGVLPVDSIYTPVRRVNYQVEN TRVGRRDDFDKLTMEIWTDGSIIPQEALSLAAKIMTEHLDIFVNLTDEAKNAEIMVEKEE TQKEKMLEMTIEELDLSVRSYNCLKRAGINTVQELTNKSEPEMIKVRNLGRKSLEEVKLK LHDLGLGLRKDD >gi|284795529|gb|ADDQ01000020.1| GENE 35 36745 - 37134 654 129 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374876|ref|NP_814029.1| 30S ribosomal protein S11 [Enterococcus faecalis V583] # 1 129 1 129 129 256 100 2e-67 MAAKKVSRKRRVKKNIESGVAHIHSTFNNTIVMITDTHGNALAWSSAGSLGFKGSKKSTP FAAQMAAEAATKVAMEHGLKTVDVTVKGPGSGREAAIRSLQATGLEVTAIRDVTPVPHNG CRPPKRRRV >gi|284795529|gb|ADDQ01000020.1| GENE 36 37162 - 37527 606 121 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374875|ref|NP_814028.1| 30S ribosomal protein S13 [Enterococcus faecalis V583] # 1 121 1 121 121 238 100 7e-62 MARIAGVDIPRDKRVVVSLTYIYGIGNTTAKKVLANVGVSEDVRVRDLTNEQTDAIRAEI DKLKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPTRGQNTKNNARTRKGPTKTVAGKK K >gi|284795529|gb|ADDQ01000020.1| GENE 37 37547 - 37663 210 38 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374874|ref|NP_814027.1| 50S ribosomal protein L36 [Enterococcus faecalis V583] # 1 38 1 38 38 85 100 6e-16 MKVRPSVKPMCEHCKVIRRKGRVMVICPANPKHKQRQG >gi|284795529|gb|ADDQ01000020.1| GENE 38 37696 - 37914 311 72 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 [Streptococcus pneumoniae TIGR4] # 1 72 1 72 72 124 81 1e-27 MAKEDMIEVEGTVVETLPNAMFKVELENGHQVLATVSGKIRMHYIRILPGDKVTVELSPY DLTRGRITYRFK >gi|284795529|gb|ADDQ01000020.1| GENE 39 38125 - 38775 789 216 aa, chain - ## HITS:1 COG:L140714 KEGG:ns NR:ns ## COG: L140714 COG0563 # Protein_GI_number: 15674059 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Lactococcus lactis # 1 213 1 214 215 300 68.0 9e-82 MNLILMGLPGAGKGTQAEKIIDTYGIPHISTGDMFRAAMKNETALGLEAKSYIDKGELVP DEVTNGIVKERLAEPDTDKGFLLDGFPRTLDQAKALDTMLKELNKKIDAVIDIHVEEDVL IERLAGRFICRTCGATYHKLFNPPKVEGTCDRCGGHEFYQREDDKPETVKNRLAVNIESS APILAFYKEQGLMHTIDGNREIDTVFSDVKKIIDEN >gi|284795529|gb|ADDQ01000020.1| GENE 40 38862 - 40160 762 432 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 [alpha proteobacterium BAL199] # 10 432 19 439 447 298 38 6e-80 MFKLLKNAFKVKDIRSKILFTVLILFVFRLGAHITVPGVNAKGLSDLSSLPFLNMLNMVS GSAMQNFSIFSMGVSPYITASIIIQLLQMDIVPRFVEWSKQGEVGRKKLNQATRYLTIVL GVAQSMGITAGFNSLSQTGIVNNPTLGTFVMIAVILTAGTMFVTWMGEQITEKGIGNGVS MIIFAGIISRLPGAVKEIYEDYFVNIESSRIWQSVIFIAILVIAILVIVTVVTFFQQAER KIPIQYTKRVSGAPTSSYLPLKVNAAGVIPVIFASSLIATPNAILQAFSSKFAGENWYDI MTKIFSYNTVPGAIIYTVLIVAFTFFYAFVQVNPEKLAENLQKQGSYIPSVRPGKGTEEY VSGVLMRLSVVGSIFLGLVALLPIIAQMVWNLPQSIGLGGTSLLIVIGVALETTKQLEGL MMKRQYVGFINK >gi|284795529|gb|ADDQ01000020.1| GENE 41 40161 - 40601 731 146 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374870|ref|NP_814023.1| 50S ribosomal protein L15 [Enterococcus faecalis V583] # 1 146 1 146 146 286 100 2e-76 MKLHELKPAEGSRQVRNRVGRGTSSGNGKTAGRGQKGQKARSGGGVRLGFEGGQTPLFRR LPKRGFTNINRKDYAVVNLDTLNRFEDGTEVTPVVLKEAGIVKNEKAGIKVLADGELTKK LTVKAAKFSKSAQEAIEAAGGSIEVI >gi|284795529|gb|ADDQ01000020.1| GENE 42 40649 - 40828 280 59 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374869|ref|NP_814022.1| ribosomal protein L30 [Enterococcus faecalis V583] # 1 59 1 59 59 112 98 5e-24 MAELKITLKRSVIGRPQKQRATVKALGLGKVNSTVTKPANEAIKGMVNTISHLVDVEEV >gi|284795529|gb|ADDQ01000020.1| GENE 43 40843 - 41343 817 166 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374868|ref|NP_814021.1| ribosomal protein S5 [Enterococcus faecalis V583] # 1 166 1 166 166 319 100 3e-86 MVYIDPKHLELEDRVVAINRVTKVVKGGRRLRFAALVVVGDKNGHVGFGTGKAQEVPEAI RKAIEDAKKNLVEVPMVGSTIPHEVIGVFGGGRILMKPAVEGSGVAAGGPVRAVLELAGV ADITSKSLGSNTPINVVRATVEGLKQLKRAEEVAALRGKSVEEIIG >gi|284795529|gb|ADDQ01000020.1| GENE 44 41364 - 41729 599 121 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227520008|ref|ZP_03950057.1| 50S ribosomal protein L18 [Enterococcus faecalis TX0104] # 1 121 1 121 121 235 99 5e-61 MKIVITKPDKNKTRQKRHRRVRNKISGTAECPRLNIFRSNKNIYAQVIDDVAGVTLASAS ALDKEISGGTKTETAAAVGKLVAERAAEKGIKKVVFDRGGYLYHGRVQALAEAARENGLE F >gi|284795529|gb|ADDQ01000020.1| GENE 45 41881 - 42417 909 178 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227520007|ref|ZP_03950056.1| 50S ribosomal protein L6 [Enterococcus faecalis TX0104] # 1 178 1 178 178 354 99 5e-97 MSRIGNKVVVLPAGVEIKQDGNNITVKGPKGELTREFSSDIKMNIEGNEVTFTRPNDSKE MKTIHGTTRANFNNMVVGVSEGFQKALELIGVGYRAQVQGNKLTLNVGYSHPVEMTAPEG VTFEVPANTQVIVKGINKEVVGELAANIRGVRPPEPYKGKGIRYVGEFVRRKEGKTGK >gi|284795529|gb|ADDQ01000020.1| GENE 46 42449 - 42847 660 132 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374865|ref|NP_814018.1| 30S ribosomal protein S8 [Enterococcus faecalis V583] # 1 132 1 132 132 258 100 4e-68 MVMTDPIADFLTRIRNANMVKHETLEVPASKIKRDIAEILKREGFIRDVEYIEDDKQGVI RVFLKYGKNEERVITNLKRISKPGLRAYVKADEVPKVLNGLGIAIISTSEGVITDKEARA KNIGGEVIAYVW >gi|284795529|gb|ADDQ01000020.1| GENE 47 42883 - 43068 333 61 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374864|ref|NP_814017.1| 30S ribosomal protein S14 [Enterococcus faecalis V583] # 1 61 1 61 61 132 98 3e-30 MAKKSMIAKNKRPAKHSTQAYTRCERCGRPHSVYRKFHLCRICFRELAYKGQIPGVKKAS W >gi|284795529|gb|ADDQ01000020.1| GENE 48 43087 - 43626 896 179 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374863|ref|NP_814016.1| 50S ribosomal protein L5 [Enterococcus faecalis V583] # 1 179 1 179 179 349 100 2e-95 MNRLKEKYIKEVTPSLVEKFNYSSVMQTPKVDKIVINMGVGDAVSNAKNLDKAVEELALI TGQKPLITKAKKSIAGFRLREGMPIGAKVTLRGERMYEFLDKLVTVSLPRVRDFHGVSKK AFDGRGNYTLGIKEQLIFPEVDYDLVDKVRGMDIVIVTTANTDEESRELLAQLGMPFQK >gi|284795529|gb|ADDQ01000020.1| GENE 49 43652 - 43963 517 103 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374862|ref|NP_814015.1| 50S ribosomal protein L24 [Enterococcus faecalis V583] # 1 103 1 103 103 203 100 2e-51 MFVKKGDKVKVITGKDKNKEGVVLAAFPKQDKVIVEGVNVVKKHQKPNQAAPQGGILEVE APIHVSNVMVIDPSNGEATKVAFKEVDGKKVRVSKKTGEVLDK >gi|284795529|gb|ADDQ01000020.1| GENE 50 43999 - 44367 591 122 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374861|ref|NP_814014.1| ribosomal protein L14 [Enterococcus faecalis V583] # 1 122 1 122 122 232 99 4e-60 MIQQESRLRVADNSGAREILTIKVLGGSGRKTANIGDVIVATVKQATPGGVVKKGEVVKA VIVRTKSGARRADGSYIKFDENAAVIIRDDKSPRGTRIFGPVARELRENNFMKIVSLAPE VL >gi|284795529|gb|ADDQ01000020.1| GENE 51 44425 - 44712 476 95 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227520001|ref|ZP_03950050.1| 30S ribosomal protein S17 [Enterococcus faecalis TX0104] # 1 95 1 95 95 187 98 9e-47 MEGGQTRMTEERNQRKVYQGRVVSDKMDKTITVVVETKKNHPIYGKRMKYSKKYKAHDEN NTAKVGDIVKIMETRPLSATKRFRLLEVVEEAVII >gi|284795529|gb|ADDQ01000020.1| GENE 52 44715 - 44903 296 62 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374859|ref|NP_814012.1| ribosomal protein L29 [Enterococcus faecalis V583] # 1 62 1 62 62 118 100 7e-26 MKVKEIRELTTAEMLDKEKQLKEELFNLRFQLATGQLENTARIKEVRQSIARIKTVLREQ AN >gi|284795529|gb|ADDQ01000020.1| GENE 53 44893 - 45327 753 144 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374858|ref|NP_814011.1| 50S ribosomal protein L16 [Enterococcus faecalis V583] # 1 144 1 144 144 294 100 7e-79 MLVPKRVKHRREFRGKMRGEAKGGKEVAFGEWGLQATESHWITNRQIEAARIAMTRYMKR GGKVWIKIFPHKSYTSKAIGVRMGKGKGAPEGWVSPVKRGKIMFEIAGVPEEVAREALRL ASHKLPVKTKIVKREEMGGESNEG >gi|284795529|gb|ADDQ01000020.1| GENE 54 45330 - 45986 1112 218 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374857|ref|NP_814010.1| 30S ribosomal protein S3 [Enterococcus faecalis V583] # 1 218 1 218 218 432 99 1e-120 MGQKVHPIGMRVGIIRDWDAKWYAEKEYAEFLHEDLRIRKFIATKLADAAVSTIEIERAA NRVNISIHTAKPGMVIGKGGSEVENLRKELNKLTGKRVHINIVEIKKPDLDAKLVGEGIA RQLENRVAFRRAQKQAIQRAMRAGAKGIKTQVSGRLNGADIARSEGYSEGTVPLHTLRAD IDYAWEEADTTYGKLGVKVWIYRGEILPTKKNTEKGGK >gi|284795529|gb|ADDQ01000020.1| GENE 55 46053 - 46406 564 117 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227519997|ref|ZP_03950046.1| 50S ribosomal protein L22 [Enterococcus faecalis TX0104] # 1 117 1 117 117 221 100 6e-57 MQMSEQITSAKATAKTVRTSPRKARLVIDLIRGKSVADAISILKFTPNKSAGIIEKVLMS AVANAENNFDLDVESLVVSEAFVNEGPTMKRFRPRAKGSASPINKRTSHITVVVTEK >gi|284795529|gb|ADDQ01000020.1| GENE 56 46422 - 46700 486 92 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374855|ref|NP_814008.1| 30S ribosomal protein S19 [Enterococcus faecalis V583] # 1 92 1 92 92 191 100 6e-48 MGRSLKKGPFVDDHLMKKVEAQQGAEKKKVIKTWSRRSTIFPSFVGFTIAVYDGRKHVPV YIQEDMVGHKLGEFAPTRTYRGHVADDKKTKR >gi|284795529|gb|ADDQ01000020.1| GENE 57 46743 - 47573 1431 276 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374854|ref|NP_814007.1| 50S ribosomal protein L2 [Enterococcus faecalis V583] # 1 276 1 276 276 555 99 1e-157 MAIKKYKPTTNGRRNMTSSDFAEITTSTPEKSLLQPLKNNAGRNNNGRITVRHQGGGHKR QYRVIDFKRNKDNVAAVVKTIEYDPNRSANIALVHYEDGVKAYILAPKGLEVGMRLVSGP EADIKVGNALPLENIPVGTVIHNIEMKPGKGGQLIRSAGTSAQVLGKEGKYVLIRLNSGE VRMILATCRATIGSVGNEQHELINIGKAGRSRWMRKRPTVRGSVMNPNDHPHGGGEGKTP IGRKAPVSPWGQPAIGYKTRNKKAKSDKLIVRRRTK >gi|284795529|gb|ADDQ01000020.1| GENE 58 47613 - 47903 471 96 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374853|ref|NP_814006.1| ribosomal protein L23 [Enterococcus faecalis V583] # 1 96 1 96 96 186 100 3e-46 MELLDVIKRPVITEKSMLAMDEKKYTFEVDTRANKTLVKQAVESAFDVKVANVNILNVRP KFKRMGKYAGYTKKRRKAIVTLTEDSKEIQLFEAAE >gi|284795529|gb|ADDQ01000020.1| GENE 59 47903 - 48526 1033 207 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227519993|ref|ZP_03950042.1| 50S ribosomal protein L4 [Enterococcus faecalis TX0104] # 1 207 1 207 207 402 100 1e-111 MPNVALFKQDGTQNGEITLNEEIFGIEPNESVVYDAIIMQRASLRQGTHAVKNRSAVRGG GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSDKVAE NNLVAVEGLSFDAPKTKEFKQVLANLSIDTKVLVVLENGNDFAALSARNLPNVSVVTSDN VSVLDVVSANKVLATQTALTQIEEVLA >gi|284795529|gb|ADDQ01000020.1| GENE 60 48552 - 49181 1059 209 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374851|ref|NP_814004.1| 50S ribosomal protein L3 [Enterococcus faecalis V583] # 1 209 1 209 209 412 100 1e-114 MTKGILGKKVGMTQIFTESGELIPVTVVEATPNVVLQVKTVETDGYEAIQVGYQDKREVL SNKPAKGHVAKANTAPKRFIKEFKNVELGEYEVGKEIKVDVFQAGDVVDVTGTTKGKGFQ GAIKRHGQSRGPMSHGSRYHRRPGSMGPVAPNRVFKNKRLAGRMGGDRVTIQNLEVVKVD VERNVILIKGNIPGAKKSLITIKSAVKAK >gi|284795529|gb|ADDQ01000020.1| GENE 61 49203 - 49547 575 114 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227519991|ref|ZP_03950040.1| 30S ribosomal protein S10 [Enterococcus faecalis TX0104] # 1 114 1 114 114 226 99 3e-58 MSTFKIGEGGNKMAKQKIRIRLKAYEHRILDQSADKIVETAKRTGADVSGPIPLPTERSL YTVVRATHKYKDSREQFEMRTHKRLIDIVNPTPKTVDALMKLDLPSGVNIEIKL >gi|284795529|gb|ADDQ01000020.1| GENE 62 49579 - 49650 62 23 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVDQRFDLPAVKREVATRSDALP >gi|284795529|gb|ADDQ01000020.1| GENE 63 49862 - 51028 1231 388 aa, chain - ## HITS:1 COG:CAC0877 KEGG:ns NR:ns ## COG: CAC0877 COG2230 # Protein_GI_number: 15894164 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cyclopropane fatty acid synthase and related methyltransferases # Organism: Clostridium acetobutylicum # 7 386 8 386 391 404 52.0 1e-112 MLEKETYSQLFKWSFSKKTQVTYWDGTVKEYGQGSGDPVFKIVFNEKIPVKDLLNNASLT LGEAYMDRKIEIEGDIQALIYDVYNQKDSFLHNAKFIKWLPKESHSKKRSQEDIHSHYDL GNDFYKKWLDQTMTYSCAYFKTPEDTLEQAQVNKVHHILDKLFIKEDDTLLDIGCGWGTL ILTAVKEYGAKATGITLSEEQFHHIRHIIEKEGLQDRMTVKLMDYRDLKGESFDHITSVG MFEHVGAENLHEYFDVVQRNLAPKGTALIHGISRQQGGAKNAWINRYIFPGGYIPGVTEL VGHMTENDLQVIDLESLRRDYQLTLEHWTKNFHNIEAEIVDEKGERFYRMWDLYLQACAA SFQASNIDVIQYLLVHPDNNDIPMRRIG >gi|284795529|gb|ADDQ01000020.1| GENE 64 51300 - 52124 959 274 aa, chain - ## HITS:1 COG:lin0667 KEGG:ns NR:ns ## COG: lin0667 COG0351 # Protein_GI_number: 16799742 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Listeria innocua # 1 269 3 271 271 294 54.0 1e-79 MEKVLTIAGSDSTGGAGIQADLKTFEEYGVFGFSSLTSIVTMDPTTGWSHEVTELPETLL EKQLISVFAGGPVAALKTGMMGNEQNIKMASKYIKQEKIQKVVIDPVIACKGTAQILQPK SVEGLKNDLLPLALVATPNLIEAGILSGLGEISSVAEMEEAAKRIVQMGAKHVVVKGGHR LAGEKALDLFYDGHTAHLLENELYPTDYNHGAGCTFSAAITAGLAKGYSVLEAVTLAKKF VAAAIKHGIQVNPYVGHVWHGAYTHAEQRMRKKE >gi|284795529|gb|ADDQ01000020.1| GENE 65 52306 - 53493 1486 395 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 395 1 407 407 577 70 1e-164 MAKEKFDRSKSHVNIGTIGHVDHGKTTLTAAIATVLSKHGGGEAQSYDSIDNAPEEKERG ITINTSHIEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHI LLSRNVGVPYIVVFLNKMDMVDDEELLELVEMEVRDLLSEYDFPGDDVPVIAGSALKALE GDESYEEKILELMAAVDEYIPTPERDTDKPFMMPVEDVFSITGRGTVATGRVERGEVRVG DEVEIVGIKDETSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDIERGQVLAKPATI TPHTKFKAEVYVLSKEEGGRHTPFFTNYRPQFYFRTTDVTGVVELPEGTEMVMPGDNVAM DVELIHPIAIEDGTRFSIREGGRTVGSGVVTEIVK >gi|284795529|gb|ADDQ01000020.1| GENE 66 53644 - 55725 2264 693 aa, chain - ## HITS:1 COG:SPy0273 KEGG:ns NR:ns ## COG: SPy0273 COG0480 # Protein_GI_number: 15674452 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Streptococcus pyogenes M1 GAS # 1 691 1 691 692 1188 87.0 0 MAREFSLEKTRNIGIMAHVDAGKTTTTERILYYTGKIHKIGETHEGASQMDWMEQEQERG ITITSAATTAQWKGYRVNIIDTPGHVDFTIEVQRSLRVLDGAVTVLDSQSGVEPQTETVW RQATEYKVPRIVFCNKMDKIGADFFYSVESLHDRLQANAHPIQIPIGAEEDFTGIIDLIK MKAEIYTNDLGTDIQETDIPEDYLEKAQEWREKLVEAVAETDEDLMMKYLEGEEITEEEL VAGIRQATINVEFFPVLAGSAFKNKGVQLMLDAVLDYLPSPLDIDAIKGIDTKTDEETTR PADDEAPFASLAFKVMTDPFVGRLTFFRVYSGVLESGSYVLNASKGKKERIGRILQMHAN TRQEIDKVYSGDIAAAVGLKDTTTGDTLCALDAPVILESIEFPDPVIQVAVEPKSKADQD KMGVALQKLAEEDPSFRVETNVETGETVISGMGELHLDVLVDRMKREFKVEANVGAPQVS YRETFRAATKAEGKFVRQSGGKGQYGHVWVEFTPNEEGKGFEFENAIVGGVVPREYIPAV EKGLEDSMNNGVLAGYPLVDIKAKLYDGSYHDVDSNETAFRVAASMALKAAAKNANPVIL EPMMKVTITVPEDYLGDIMGHVTSRRGRVEGMEAHGNSQIVNAMVPLAEMFGYATTLRSA TQGRGTFMMVFDHYEDVPKSVQEEIIKKNGGNA >gi|284795529|gb|ADDQ01000020.1| GENE 67 55809 - 56279 806 156 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374845|ref|NP_813998.1| 30S ribosomal protein S7 [Enterococcus faecalis V583] # 1 156 1 156 156 315 100 5e-85 MPRKGPVAKRDVLPDPIYNSKLVTRLINRVMVDGKRGIAANIIYNSFDIIKESTGNDPLE VFEQAMKNVMPVLEVKARRVGGSNYQVPVEVRPERRTTLGLRWVVNYARLRGEHTMEERL AKEIMDAANNTGASVKKREDTHKMADANRAFAHYRW >gi|284795529|gb|ADDQ01000020.1| GENE 68 56335 - 56748 706 137 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374844|ref|NP_813997.1| 30S ribosomal protein S12 [Enterococcus faecalis V583] # 1 137 1 137 137 276 100 2e-73 MPTINQLVRKPRKSKVEKSDSPALNKGYNSFKKTQTNVNSPQKRGVCTRVGTMTPKKPNS ALRKYARVRLSNLIEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIVRGALDTAGV NDRKQSRSKYGTKRPKA >gi|284795529|gb|ADDQ01000020.1| GENE 69 57093 - 57773 899 226 aa, chain + ## HITS:1 COG:L0045 KEGG:ns NR:ns ## COG: L0045 COG0120 # Protein_GI_number: 15674215 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase # Organism: Lactococcus lactis # 2 222 3 223 224 264 62.0 1e-70 MNLKQMVGIEAAKYVEDGMIVGLGTGSTAKFMVDEIGRRVKEEGLSIVGVTTSKETEKQA LALGIPLKSIDEVPYVDLTIDGADEISADFQGIKGGGAALLFEKIVATYSKKCIWIVDKS KMVDDLGAFPLPVEVVPYGSRQLVHLFEEKGYHPTLRLNAAGETLITDGGHHIIDLHLEK ITDPEALGSYLDNLVGVVEHGLFLNMVSMVIVGYEDGPKTLHVPAR >gi|284795529|gb|ADDQ01000020.1| GENE 70 57815 - 58390 672 191 aa, chain + ## HITS:1 COG:STM2772 KEGG:ns NR:ns ## COG: STM2772 COG1961 # Protein_GI_number: 16766084 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Salmonella typhimurium LT2 # 1 178 1 179 190 103 34.0 2e-22 MKRIGYARTTIIEDDLKNQLTTLQSFGCDDIFQETFDPQAEISVLDEVEKLLSAGDTLIV CKLHHLGKTTRQLTDFMKMLKEKQVDFVSISEGIDTHLPTGEAYFQLMESLSAMECALIK ERTLVGLHKARENGKVGGRPKIDGRTVRKIRALYYENKETIQFISNKCGVSVGTCYKYIN LPETDVERLYS >gi|284795529|gb|ADDQ01000020.1| GENE 71 58565 - 59240 758 225 aa, chain + ## HITS:1 COG:NMB1604 KEGG:ns NR:ns ## COG: NMB1604 COG0588 # Protein_GI_number: 15677454 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Neisseria meningitidis MC58 # 3 225 2 224 227 328 73.0 3e-90 MPKLVFSRHGLSEWNALNQFTGWADVDLAPEGVEEAKEGGRKIKEAGIEFDVAYTSVLTR AIKTCNYLLEYSDQLWVPQIKSWRLNERHYGKLQGLNKKETAEKYGDEQVHIWRRSYDTL PPLMEATDEGSAANDRRYAMLDQRDIPGGENLKVTLERALPFWQDEIAPALKDNKTVLVA AHGNSLRALAKHIEGISDEDIMDLEIPTGKPLVYELNDDLTVKEK Prediction of potential genes in microbial genomes Time: Sun May 15 12:28:52 2011 Seq name: gi|284795528|gb|ADDQ01000021.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont55.1, whole genome shotgun sequence Length of sequence - 21484 bp Number of predicted genes - 21, with homology - 19 Number of transcription units - 12, operones - 6 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 64 - 816 915 ## COG1414 Transcriptional regulator - Prom 836 - 895 7.0 2 2 Tu 1 . - CDS 947 - 1414 511 ## EF0421 MerR family transcriptional regulator - Prom 1483 - 1542 8.9 + Prom 1456 - 1515 6.5 3 3 Op 1 . + CDS 1557 - 3032 1695 ## COG0477 Permeases of the major facilitator superfamily 4 3 Op 2 . + CDS 3032 - 3736 701 ## EF0419 hypothetical protein - Term 3731 - 3784 5.3 5 4 Op 1 36/0.000 - CDS 3791 - 5020 276 ## PROTEIN SUPPORTED gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 6 4 Op 2 24/0.000 - CDS 5017 - 5724 263 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 7 4 Op 3 . - CDS 5737 - 6891 1348 ## COG0845 Membrane-fusion protein - Prom 7139 - 7198 10.1 + Prom 7020 - 7079 8.8 8 5 Op 1 . + CDS 7236 - 7874 490 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases + Term 7890 - 7922 1.1 9 5 Op 2 . + CDS 7953 - 9068 944 ## COG0665 Glycine/D-amino acid oxidases (deaminating) - Term 9032 - 9090 5.2 10 6 Op 1 15/0.000 - CDS 9137 - 10291 1492 ## COG0246 Mannitol-1-phosphate/altronate dehydrogenases 11 6 Op 2 . - CDS 10306 - 10743 607 ## COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain 12 6 Op 3 . - CDS 10758 - 12530 2058 ## COG2213 Phosphotransferase system, mannitol-specific IIBC component - Prom 12702 - 12761 5.9 13 7 Tu 1 . + CDS 12776 - 12865 157 ## + Term 12913 - 12948 4.3 - Term 12893 - 12942 8.3 14 8 Op 1 5/0.000 - CDS 13128 - 13562 529 ## COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain 15 8 Op 2 4/0.000 - CDS 13573 - 15606 1858 ## COG3711 Transcriptional antiterminator 16 8 Op 3 . - CDS 15597 - 17339 1471 ## COG2213 Phosphotransferase system, mannitol-specific IIBC component - Prom 17387 - 17446 6.1 + Prom 17376 - 17435 11.4 17 9 Tu 1 . + CDS 17523 - 18356 603 ## COG0561 Predicted hydrolases of the HAD superfamily - Term 18256 - 18297 -0.6 18 10 Op 1 1/0.000 - CDS 18399 - 19034 812 ## COG0778 Nitroreductase 19 10 Op 2 . - CDS 19039 - 19473 549 ## COG1846 Transcriptional regulators - Prom 19512 - 19571 4.2 - Term 19554 - 19614 10.1 20 11 Tu 1 . - CDS 19626 - 21029 1658 ## COG1757 Na+/H+ antiporter - Prom 21225 - 21284 5.9 - Term 21130 - 21178 13.4 21 12 Tu 1 . - CDS 21317 - 21406 67 ## Predicted protein(s) >gi|284795528|gb|ADDQ01000021.1| GENE 1 64 - 816 915 250 aa, chain - ## HITS:1 COG:TM0065 KEGG:ns NR:ns ## COG: TM0065 COG1414 # Protein_GI_number: 15642840 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Thermotoga maritima # 11 250 4 244 246 123 34.0 3e-28 MKETKPYGTVLLKAAKIMDCLSLQPDQTLQEIAKNTEMTASTAIKILETLTLIGYVQKDT NKTYRLGTKLIRYANQSVEQIDLAEIAVPYLENLQNTVDETIHLGILNNNEILYINKLEP KNQTIRMSSKVGITRPLYNSAMGKAVLAEFSEEQVQQYLDTQTLIPYTENTITNPLRLKK ELKQVQQTGVAYDDEEIEQDIFCSGVSLMKDGEIAGAFSVSMPKYRLTEENKTTINQALL ATKAAIEAKL >gi|284795528|gb|ADDQ01000021.1| GENE 2 947 - 1414 511 155 aa, chain - ## HITS:1 COG:no KEGG:EF0421 NR:ns ## KEGG: EF0421 # Name: not_defined # Def: MerR family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 5 155 1 151 151 288 100.0 3e-77 MWSKMIQRLLNEENLLIGISELSEIAEVSPRQLRYWEEKGYISSIAKDANGPRKYRLHTV VKVHWIKRFLDEGYTLQSAVEKAEEQHRNVGMTKKIFSQMFHGISEVCPNYVAIDLGDFD EEQKLYVVFNETTEVSEYLLIPKDADVSDELKKRK >gi|284795528|gb|ADDQ01000021.1| GENE 3 1557 - 3032 1695 491 aa, chain + ## HITS:1 COG:lin2733 KEGG:ns NR:ns ## COG: lin2733 COG0477 # Protein_GI_number: 16801794 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 4 484 7 487 493 518 61.0 1e-146 MTSQQPVDIHGKPYNRSLLVGVLLIGTFCTILNQTLLTTALPTLMKEFDISASSVQWLTT GFLLVNGIMIPISAWLINKFSSKKLYITAMSTFLIGTIICFVAQDFGMLLTGRLVQAAGV GVSMPLLQTIMLSIFPPEKRGAAMGTTGIVIGLAPALGPTLSGWIIDSYTWRDLFGMVIP IVVLVLILASFLMKNVIQLSNPSIDVLSVILSTLGFGSLLYGFSSVGDKGWGSPQVYGFL IVGAIVLCLFTYRQLHLEQPFLELRVFKSKVFTVAAILSGVTNMAMIGAEMVLPLYIQNI RGESAFHSGLMLLPGALVMGLMMPVTGRIFDKIGARRLAITGMFILTAATLPFAFLTKAT PIIYIIVLYAIRMFGISMVMMPVTTSGMNALPMNLLSHGTAVNNTFRQVASSIGTAVLIS VLTNVTKDGLPASDLLKTAPLAYRDQATNATLNGYHAAFFVATIFGVLGLAITFFLNKKE AMPVKEVGAMK >gi|284795528|gb|ADDQ01000021.1| GENE 4 3032 - 3736 701 234 aa, chain + ## HITS:1 COG:no KEGG:EF0419 NR:ns ## KEGG: EF0419 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 234 1 234 234 430 100.0 1e-119 MIIFLLILCVLGFAYTNVFGRKVWHKFCMVIFGLGFLASLSLIVLNDKDHFGMTEVTQDK TFELKSSSSSKDGPNMLLYQPLGDGSEKVYLYNTPDKKKLQKTGTENVTNTVQKDAQKAT LVQKTTKWSYQESWAKTLFGLADNDNQFAKQENTFNVASDWLVLSADQAKKLGEYMEQHA ADIKKEGTETVGKKMMAAMMANPSMSQEEQAKLTEQYTKEFQQELIQKILSDMK >gi|284795528|gb|ADDQ01000021.1| GENE 5 3791 - 5020 276 409 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 [Flavobacteriales bacterium ALC-1] # 12 407 15 410 413 110 26 6e-24 MIANLFVSTFLSLKAHKLRVFLTMVGIIIGITSVVTISALGEGMKRQVVKASSAVNADVL KIHYTMSDGSSDNFMSYEEPDYTFSRVDLKKLQDIQGIESIYPQYGESMMGGGDNLFVPM DYFGAQANLSITSTKGQNDILYGRDFQPSDANTDAIVLNHDIFEAQIRLDDPSQLIGKAV SIGGYMYKVIGILAPKDLDSLGMNDDWATAMSSFVSRESYNKLAKTKAISGINIKVREGA DREAILGQAITILSENHPEVKGTFKENDQDQQLQQQMEEMVTGMTMFLMAITAISLLVGG IGVMNIMYVSVTERKREIGIRRAIGAKPRVILFQFLMEAAFITLIGGLIGVGCGYLLATV VGGYISITPIITPSIFAISTLVSVFTGIFFGIIPAIGASRMDPIKAIYN >gi|284795528|gb|ADDQ01000021.1| GENE 6 5017 - 5724 263 235 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 13 232 7 217 311 105 32 2e-22 MEANNTNQPLIELRDINKFYPVGKEKLHVLKELNLTIHQGEFILIMGKSGSGKTTLMNII GFLDRLTDGSYHFSGTDVSKLSENKKSAFRNEYLGFIFQQFFLINSLNVSQNVQLPCVYE GKKSRAEKKAIAEKYLKIVGLETKAKSKVTELSGGQQQRVAIARSLVNDPLLIMADEPTG ALDSETGTEIMELLKELNEQGKTIVMVTHDEDMKKYASRVIHMKDGRFLEEEVIR >gi|284795528|gb|ADDQ01000021.1| GENE 7 5737 - 6891 1348 384 aa, chain - ## HITS:1 COG:BS_yknX KEGG:ns NR:ns ## COG: BS_yknX COG0845 # Protein_GI_number: 16078499 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Bacillus subtilis # 73 364 76 377 377 76 28.0 1e-13 MGAVAVIAVGGIVTVNALNKNTQQVAVKQAPKDDWGIDYFEVPDLQQIYINGVIQPEQME AFARDQKITKDPEIKVKNGDVVDAGTELFTYEDEAVTKEIEAQQNSLAKLETKRANIYNK WNRAIDKFNKTKEEDRTMSGDDLNEQYQTEVDAVDEEITFTNETLADLGAKQYISTKANF KGRVSIPEVKDANSPILRLTSEDLYLAGKVNEKDLTKISVGQKAKLTSVSNNVVVDGSIS YIDDNPPEGNSDAASGNPEGGTTMSSYSVKIALANLDKVKNGYHMQATIDLGDLGAIELP KKAIQKEGEQAYVLVNDFGTIIRRDVQVGQENGDKMAIESGLESADRVVISSKKPVKVGD IVESDAAIASDESATNESMTDASK >gi|284795528|gb|ADDQ01000021.1| GENE 8 7236 - 7874 490 212 aa, chain + ## HITS:1 COG:YLR290c KEGG:ns NR:ns ## COG: YLR290c COG0702 # Protein_GI_number: 6323321 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Saccharomyces cerevisiae # 2 89 4 95 277 67 35.0 2e-11 MKVIIFGGSGFLGQQIAKILVQRQHQVISISRHGKPATLSASWSHQVQWVCSDVTRDTNW QEQVQRADWVIDTVGILFENPRKKKTYQRLILTPVKKISSFLAQQKKPAKFLFISANTVP FPLRKYMDAKLAAEELIHQEVAEAVIFYPSLLVGQERTGTILFSKCIYFFKKIPFLKNLF IGYDPVPVAEMAQEIVHVLEGGNSIYTHRRTR >gi|284795528|gb|ADDQ01000021.1| GENE 9 7953 - 9068 944 371 aa, chain + ## HITS:1 COG:L125707 KEGG:ns NR:ns ## COG: L125707 COG0665 # Protein_GI_number: 15673855 # Func_class: E Amino acid transport and metabolism # Function: Glycine/D-amino acid oxidases (deaminating) # Organism: Lactococcus lactis # 1 365 2 366 373 397 56.0 1e-110 MKKIAIIGGGIIGMTLANYLDPQKFDITVYDEGLGQATKASAGIISPWLSKRRNKKWYQL AREGAALFPKLVKDFQLTEDIYRQSGTVILRPAAALADLAHLAEKRKQTAPEIGEITMLS AVQTAKFLPLLKETPSLFISGGGRLDGPAYLNHLQKRAEAKGVTFCSQRAHFRQLNQGWE IVTNSEKKSVDFLALTPGPHLKELLATLNLSVDIRPQKGQLLVFETPFTNSQQWPVAMLD GEADLIPFNQGKILLGATHENEQAWDLEETVSAFQQLTSGTAPFLKEAEQLFKQPMHYRV GTRAYTSDFAPFFGPLPEMPHLVVASGLGSSGLTTGPFIGYQLAEYFNTGAFKGELYQKP LSQYVKNNPSL >gi|284795528|gb|ADDQ01000021.1| GENE 10 9137 - 10291 1492 384 aa, chain - ## HITS:1 COG:L33416 KEGG:ns NR:ns ## COG: L33416 COG0246 # Protein_GI_number: 15672006 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol-1-phosphate/altronate dehydrogenases # Organism: Lactococcus lactis # 3 380 4 385 385 417 57.0 1e-116 MNAVHFGAGNIGRGFIGEILAKNGFHITFVDVNETIIQALKERKSYTIELADASHQQINV ENVTGLNNMAEPEKVVEAIAEADLVTTAIGPNILPRIAELIAQGIDARAEANCQKPLDII ACENMIGGSTFLAEEVAKYLKNPAYAEQWIGFPDAAVDRIVPLQKHEDPLFVQVEPFCEW VIDDTNRKAKEIQLEGVHYVADLEPYIERKLFSVNTGHATVAYTGALLGYQTIDEAMQDA LVVAQLKSVLQETGKLLVAKWNFDEQEHAAYIEKIIQRFQNKYISDAITRVARTPIRKLG AQERFIRPIRELQERNLVSPHLLAMIGIVFNYHDPEDEQSRQLQEMLDQESVDTVIAEVT GIEDPETVKNIKQNVERYARPQVA >gi|284795528|gb|ADDQ01000021.1| GENE 11 10306 - 10743 607 145 aa, chain - ## HITS:1 COG:L32907 KEGG:ns NR:ns ## COG: L32907 COG4668 # Protein_GI_number: 15672005 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol/fructose-specific phosphotransferase system, IIA domain # Organism: Lactococcus lactis # 9 140 8 139 143 174 65.0 6e-44 MENLTNISIELNQQFNTKEEAIRFCGEKLVEAGCVEPAYIEAMIERDQLLSVYMGNFIAI PHGTEEAKKLVKKSGICVVQVPEGVNFGTEEDEKIATVLFGIAGVGEEHLQLVQQIALYC SDMDNVVQLADALSKEEITENLAIA >gi|284795528|gb|ADDQ01000021.1| GENE 12 10758 - 12530 2058 590 aa, chain - ## HITS:1 COG:SP0394 KEGG:ns NR:ns ## COG: SP0394 COG2213 # Protein_GI_number: 15900314 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannitol-specific IIBC component # Organism: Streptococcus pneumoniae TIGR4 # 7 584 2 585 589 603 57.0 1e-172 MEQVPEKNKVSIKAKVQRLGSTLSSMVMPNIGALIAWGVLTALFIPDGYLPNKAFATMVG PMLTYLIPLLIGYTGGKVIAGDRGAVVGAIATMGVIVGTDIPMMLGAMIMGPLGGFTIKK FDQYFQHRIKAGFEMLVNNFSAGLIGFALALLGFSAIGPIVDALTAAMARGVEIILNAHL IPLTSIFIEPAKVLFLNNAINHGILTPLGTEQVLSAGKSILFLLEANPGPGLGVLLAFMF FGKGAAKSSAPGAIIIHFLGGIHEIYFPYVMMKPLLFLSVIAGGATGSLVFQTLDAGLRA PASPGSIIAILAMTPMGSYLPVILGVLAATAVSFAVSAVILKADAKEESDEFAQKVKETQ AAKAVSKGLTVANGSASLSGIQQIIFACDAGMGSSAMGASILRKKVQEAGLVQTVTNRAI NNLTDEGNALIVTQAELQERAKQKAPNATFVAVENFLNSPRYDEIVAELSGTKEKNDAQP TVSKATPASEIEGDLANVNEILLVHDDRVGSATMGMKVLEEILDKEKISMPIRKININEL TQQTQALIVTKAELTEQARKKAPKATHLSVKSMVNPQKYETVVSLLKESA >gi|284795528|gb|ADDQ01000021.1| GENE 13 12776 - 12865 157 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYEIVTKILVPIFVGIVLKLVTIWLEKQN >gi|284795528|gb|ADDQ01000021.1| GENE 14 13128 - 13562 529 144 aa, chain - ## HITS:1 COG:L32907 KEGG:ns NR:ns ## COG: L32907 COG4668 # Protein_GI_number: 15672005 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol/fructose-specific phosphotransferase system, IIA domain # Organism: Lactococcus lactis # 3 139 2 139 143 125 44.0 2e-29 MFEITAEQIMLNQSYASWEEALAASGELLLKNQLVTPDYVKAMYQRQQKVSVYIGNFVAL PHAEGQDEQVLKEGICFIQVPDGVNFGTEADRKIATLLFVVALKSQRQLSMLQELAFFCS DLENIQRLSDCQTIDEAQKILAQA >gi|284795528|gb|ADDQ01000021.1| GENE 15 13573 - 15606 1858 677 aa, chain - ## HITS:1 COG:BS_ydaA KEGG:ns NR:ns ## COG: BS_ydaA COG3711 # Protein_GI_number: 16077483 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus subtilis # 1 676 1 689 694 234 27.0 4e-61 MFLTTRETVLLTELVNSPTPVSVNRMMNLLKVSRRTVYRELENLETSLASMGATLEKVAR GRFSIQADEAAMTEIQAAILGEETQELSTLARQHAILLTLLQTKEPVSMHYFLETYCISN TTFYADIKQLETRIARIPLTISRNQGYEVTGSEKYRRLLMANILSMEINEYQFFHFTELT TNDHFFFQFIHAEHLAFAQKIVQPEVETLFPALSDRKLQHLILMLTIAMDRVTAGFYLAD ETYTGQMNKAFLNCSKRLFSKVAAETKQLYAVSEIVFFASLLSDFSNSFDEDFFDEHFDT QLAYAVKQLIEAVSQETEVNFFEDTNLYKMLLTHLSGVFSRAVLQEEDLTNPILERIMNQ YQEIAAALRQALPQIFPQKNLSEEEIAYMVLHFANSLERSPKIMEVDIAGFSPSGLASTS MLEMRLRRYFPFINQIHFFRIADLGKVNVEENYDLVISTSLLPGYNGKYKLISPLLLDDE IRQLKEEFKRISHEKRSLRKAPVKKIGGEESYETVVAFMEEISKLLETFFIADLNNQADL AETVQQALAQLSADLITDSAIVCQQLMKRYEQAPIGIPQTEMALFHTSSTAVTQPVFCIF NLAQPLMIEGMDKKPMQLQRMLLMLAPMPIDETIGKILGKISGAIIMNDLNTEIFHSGNE AIVYQLLSSLLIEEMKG >gi|284795528|gb|ADDQ01000021.1| GENE 16 15597 - 17339 1471 580 aa, chain - ## HITS:1 COG:SP0394 KEGG:ns NR:ns ## COG: SP0394 COG2213 # Protein_GI_number: 15900314 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannitol-specific IIBC component # Organism: Streptococcus pneumoniae TIGR4 # 22 570 11 582 589 372 38.0 1e-102 MKEKEMHSLFFKHKFVKVTPYLRRFGHRLSGMIMPNLSIFIAWSLLSLVAGYTTGNLRLA LSEVETIMIRVVLPILIGFTGGKMFEEQRGGVVAAIATVGVIVSTDVPQLFGAMFIGPLA GYTFAKIEQILLPKVKEGYEMLTKNFLAGIVGGLLCCFGILVVAPAVESASFWLYQFSSW LIEANLLPLVHVFLEPLKVLFFNNAINHGLLTPLGLEGASQTGQSILFLLETNPGPGVGV LVAFLLFGPVGQRKTAGGATMIQLIGGIHEIYFPFVLMDPRLFLAVIAGGMSGTLVFQIF NVGLSAPASPGSLVAILANAPTEARLAVFSGIFVSFLCSFAIASLLLKRQRGIEPVSMIK MKEEDQVETVTPNYQQILFVCDAGMGSSAMGASLLSRQLKAVDLEIPVTYQSVHQMKWQP KTLVVIQAELKQLAQKYVPEKDMVSVQNFLEIKSYYPQVLAKLTASSQEQSSLGSEATET NSTKQIQKLVFLYAENVRGSQTMGMELLRQQAAKQGVAIEVSKEPLETVFFTKETTYVVT RELAQAYHLDLTQQNLYVVTSFLNKKEYQEWLEGGADRCF >gi|284795528|gb|ADDQ01000021.1| GENE 17 17523 - 18356 603 277 aa, chain + ## HITS:1 COG:lin2847 KEGG:ns NR:ns ## COG: lin2847 COG0561 # Protein_GI_number: 16801907 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 1 277 1 277 279 303 54.0 2e-82 MAIKAIVMDIDGTLLTSEKKISPKTRQALVAAQKQGLSLILASGRPTNGMRPLADELEMA HYNGHLLSYNGACVTHHGSQQQLFNQTISKSLSQQILEHLKQFDVIPMINDETFMYVNDV FHNTLHLETGDFNIIEYESRGGNFQLCEWRDLAARLNFPLNKILIAGEPAYLQKYHEAIY APFKETVTAAFSAPFYFEFTAKNIDKARSLEKLTLQLGIAAEEVIAFGDGHNDYTMLEWA GTGIAMENAVDELKSIATEVTLSNDNDGIAVALANFL >gi|284795528|gb|ADDQ01000021.1| GENE 18 18399 - 19034 812 211 aa, chain - ## HITS:1 COG:L102062_2 KEGG:ns NR:ns ## COG: L102062_2 COG0778 # Protein_GI_number: 15673454 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Lactococcus lactis # 16 211 1 196 196 289 73.0 2e-78 MTTYTTNDFSEIVFGRKSVRVYDETHKISHEEMLTMIQEATTAPSSVNMQPWRFVVVESE AGKEKLKPLIRFNTRQNETSSAMLLIFGDLNCHERGEEIYNQAYASGKMPKEVRDQQLAA IIPHYESLSREQMNDIVKIDASLAAMQFMLVARAHGYETNPIGGFEAEKLAETFGLDQER YVPVMILSVGKGMETGYESVRLAPEKITTFE >gi|284795528|gb|ADDQ01000021.1| GENE 19 19039 - 19473 549 144 aa, chain - ## HITS:1 COG:L102062_1 KEGG:ns NR:ns ## COG: L102062_1 COG1846 # Protein_GI_number: 15673454 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 3 109 1 107 160 100 55.0 6e-22 MSLSLREVSQLLCQLKVLDQKITKVFEEQVGLSLTRYELLMILKERQPCLQTEIQEHLKI DSGAVTRHLKILEEKQYVTRQRNPENNREVLVHLTEKAQQELQQCTAKQQTVTEIIPSTF TKDDCRQLKELLTKLDQSITTKEV >gi|284795528|gb|ADDQ01000021.1| GENE 20 19626 - 21029 1658 467 aa, chain - ## HITS:1 COG:NMA0715 KEGG:ns NR:ns ## COG: NMA0715 COG1757 # Protein_GI_number: 15793692 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Neisseria meningitidis Z2491 # 14 458 14 458 459 288 36.0 1e-77 MKEKQKKKTVSVREASIVLLIIVAAIATGVIGLKISPNITILFVIALILGYAMFRKVPFD QMHKGIVDGLKPGIIPIFIFILVGALIAVWIQAGIIPTIMVFGFKMISVKWFVPSVFIVC AIVGSAVGSAFTVMSTIGIAFFGIGSTLGLNPALVVGAIVSGSVFGDKMSPLSESTNLAA AIVEADLFKHIKNLMWSTVPAFIVSLILFMILGQTYANTSLTEVVQVIQVLEDHFTISIW SLLPLALMLICAWRKIPAIITILLNIIVAVIMIIIQNPKVSLQALGNTLENGFVSQTGNA QIDQLLSRGGIMSMMPTVALIILTLSLGGLLMELGLISAVMEVVSQKMSSTPKLILSTLL TGIGVNIFIGEQFLSVILPGNAFKEVYKKEGLDPTVLGRTLEDGGTVINYLIPWGIAGSF VAGTFGVPTLTYLPFVFFSLLSPVFSMVSAFTGLGIKRLSAEPVTEK >gi|284795528|gb|ADDQ01000021.1| GENE 21 21317 - 21406 67 29 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MACEKIFYTIFVDKSVSSWYIEIHKLLAQ Prediction of potential genes in microbial genomes Time: Sun May 15 12:29:07 2011 Seq name: gi|284795527|gb|ADDQ01000022.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont56.1, whole genome shotgun sequence Length of sequence - 1560 bp Number of predicted genes - 3, with homology - 2 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 385 - 444 5.0 1 1 Tu 1 . + CDS 465 - 695 208 ## EF_B0061 hypothetical protein + Prom 828 - 887 3.6 2 2 Op 1 . + CDS 917 - 1132 163 ## EF_B0062 UvrC family transcriptional regulator + Prom 1137 - 1196 5.8 3 2 Op 2 . + CDS 1224 - 1310 129 ## + Term 1372 - 1408 1.7 Predicted protein(s) >gi|284795527|gb|ADDQ01000022.1| GENE 1 465 - 695 208 76 aa, chain + ## HITS:1 COG:no KEGG:EF_B0061 NR:ns ## KEGG: EF_B0061 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 2 70 1 69 168 120 84.0 1e-26 MVRRTKKEFKPYNDYVDRPFELKWPTAFPLGELQAAIKETNDYHSREIERLPQQSQAKIE HLLSRSIKQNSAEFLR >gi|284795527|gb|ADDQ01000022.1| GENE 2 917 - 1132 163 71 aa, chain + ## HITS:1 COG:no KEGG:EF_B0062 NR:ns ## KEGG: EF_B0062 # Name: not_defined # Def: UvrC family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 9 69 1 61 67 76 62.0 2e-13 MLLSMNITVTEIFMKTYDYRGSVIKEGNKTTSIAYVQCACGCLASRMSSNSDKYKCSWCK RTYMLGKEIYR >gi|284795527|gb|ADDQ01000022.1| GENE 3 1224 - 1310 129 28 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAEKLISLIIAPLLVGLVLLLVDRWLDD Prediction of potential genes in microbial genomes Time: Sun May 15 12:29:14 2011 Seq name: gi|284795526|gb|ADDQ01000023.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont58.1, whole genome shotgun sequence Length of sequence - 2902 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 3, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 216 153 ## COG3041 Uncharacterized protein conserved in bacteria + Term 247 - 290 -0.8 + Prom 861 - 920 3.1 2 2 Op 1 . + CDS 1019 - 1204 236 ## EF_B0037 hypothetical protein 3 2 Op 2 . + CDS 1207 - 1380 253 ## EF_B0036 hypothetical protein 4 2 Op 3 . + CDS 1404 - 1994 584 ## EF_B0035 hypothetical protein + Prom 2006 - 2065 2.7 5 3 Tu 1 . + CDS 2099 - 2878 410 ## EFA0021 hypothetical protein Predicted protein(s) >gi|284795526|gb|ADDQ01000023.1| GENE 1 1 - 216 153 71 aa, chain + ## HITS:1 COG:SP0276 KEGG:ns NR:ns ## COG: SP0276 COG3041 # Protein_GI_number: 15900210 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 70 21 92 92 72 50.0 3e-13 GKNLEKLKEVLVLLQEQQTLPPKYKDHALTGNYIGTRECHIEPDWLLIYKIDGDKLILTL ARIGSHSELFR >gi|284795526|gb|ADDQ01000023.1| GENE 2 1019 - 1204 236 61 aa, chain + ## HITS:1 COG:no KEGG:EF_B0037 NR:ns ## KEGG: EF_B0037 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 61 1 61 61 77 78.0 2e-13 MNEPQLKLDLEKAQLEYQKLSQAINENDTVTLLLNYGCLKNANDRLNQLSFLLNHIEWKD V >gi|284795526|gb|ADDQ01000023.1| GENE 3 1207 - 1380 253 57 aa, chain + ## HITS:1 COG:no KEGG:EF_B0036 NR:ns ## KEGG: EF_B0036 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 57 1 57 57 73 98.0 2e-12 MAEKKKKYCVTIVETLEVVVSVFAESEEQAHELVSNMYYDQEIILTEDNHEATEFII >gi|284795526|gb|ADDQ01000023.1| GENE 4 1404 - 1994 584 196 aa, chain + ## HITS:1 COG:no KEGG:EF_B0035 NR:ns ## KEGG: EF_B0035 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 182 1 182 182 368 100.0 1e-101 MGTRTAIFKEQADGTYQGIYCHWDGYIEGVGAVLYEHYQDPEKIQKVINQKKGLSCLGVK ENVLYEYDNVGCRELTCCGWHEFCLYVRPETEMYLAQSLEEIREQQYLTLTDLDRIDGWT ELVEGKVTFTPYRGSDNNGYLYAQRQSGEWLVSTMNCNGDMKDFEPLSKYFHEKKTKKET FCGEQKISKELVVIPE >gi|284795526|gb|ADDQ01000023.1| GENE 5 2099 - 2878 410 259 aa, chain + ## HITS:1 COG:no KEGG:EFA0021 NR:ns ## KEGG: EFA0021 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 258 1 249 251 355 74.0 8e-97 MDFQNIQTVKELIHALKQYNQNLATTIFDDTQGYISVAFRKESIERNGKNFQFLCFYPNY EVALYPVETLLSYLENLPEQATIAIKDPDGNYSSLYLTIDETIDKGTKYKWLVISDKLSY ERFFLTSTLTAQEQAFEKMLKELETEHDNTVEYIHNWLCKQNDESLFQGILKEDRTIKGS VTYCMGKAQEQAEKRPNAMVMVTDEVAFGWIKEYFILEKLPEMKVIGKVMTTTKKQPAKK EEPKPQRKEVDEQIKLFEL Prediction of potential genes in microbial genomes Time: Sun May 15 12:29:33 2011 Seq name: gi|284795525|gb|ADDQ01000024.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont61.1, whole genome shotgun sequence Length of sequence - 30691 bp Number of predicted genes - 29, with homology - 29 Number of transcription units - 14, operones - 6 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 1200 1041 ## EF2174 hypothetical protein - Prom 1245 - 1304 9.0 - Term 1455 - 1496 7.3 2 2 Op 1 1/0.333 - CDS 1520 - 2362 574 ## COG3475 LPS biosynthesis protein 3 2 Op 2 . - CDS 2378 - 3211 794 ## COG0463 Glycosyltransferases involved in cell wall biogenesis - Prom 3253 - 3312 5.5 - Term 3302 - 3331 0.5 4 3 Tu 1 . - CDS 3332 - 4729 1328 ## COG2148 Sugar transferases involved in lipopolysaccharide synthesis - Prom 4751 - 4810 2.7 5 4 Op 1 . - CDS 4835 - 6136 921 ## EF2178 hypothetical protein 6 4 Op 2 . - CDS 6165 - 8135 1796 ## EF2179 hypothetical protein 7 4 Op 3 11/0.000 - CDS 8169 - 10310 2309 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 8 4 Op 4 4/0.000 - CDS 10322 - 13465 3266 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 9 4 Op 5 26/0.000 - CDS 13455 - 14672 1293 ## COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component 10 4 Op 6 . - CDS 14685 - 15479 681 ## COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component - Prom 15550 - 15609 7.0 + Prom 15467 - 15526 5.4 11 5 Tu 1 . + CDS 15726 - 16067 367 ## EF2184 hypothetical protein + Term 16206 - 16248 -0.2 12 6 Op 1 . - CDS 16141 - 16491 479 ## EF2189 hypothetical protein 13 6 Op 2 . - CDS 16491 - 17216 775 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 14 6 Op 3 11/0.000 - CDS 17275 - 18117 1061 ## COG1091 dTDP-4-dehydrorhamnose reductase - Term 18133 - 18172 1.0 15 6 Op 4 11/0.000 - CDS 18210 - 19238 1195 ## COG1088 dTDP-D-glucose 4,6-dehydratase 16 6 Op 5 13/0.000 - CDS 19263 - 19835 830 ## COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 17 6 Op 6 1/0.333 - CDS 19848 - 20714 1109 ## COG1209 dTDP-glucose pyrophosphorylase - Prom 20766 - 20825 5.6 18 7 Op 1 . - CDS 20836 - 21549 737 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 19 7 Op 2 . - CDS 21553 - 22380 788 ## EF2196 glycosyl transferase, group 2 family protein 20 7 Op 3 1/0.333 - CDS 22380 - 23162 649 ## COG1216 Predicted glycosyltransferases - Prom 23197 - 23256 8.4 - Term 23178 - 23243 4.2 21 8 Tu 1 . - CDS 23290 - 24426 903 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase - Prom 24452 - 24511 4.9 22 9 Op 1 2/0.000 - CDS 24533 - 25444 817 ## COG1295 Predicted membrane protein 23 9 Op 2 . - CDS 25460 - 26224 825 ## COG0024 Methionine aminopeptidase - Prom 26251 - 26310 5.1 + Prom 26312 - 26371 6.0 24 10 Tu 1 . + CDS 26399 - 26842 740 ## COG0716 Flavodoxins + Term 26866 - 26918 15.0 - Term 26852 - 26904 15.0 25 11 Op 1 . - CDS 26916 - 27389 465 ## COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) - Prom 27433 - 27492 2.4 - Term 27445 - 27503 4.7 26 11 Op 2 . - CDS 27548 - 28120 710 ## COG1309 Transcriptional regulator - Prom 28172 - 28231 4.8 + Prom 28277 - 28336 5.1 27 12 Tu 1 . + CDS 28371 - 29609 1608 ## COG2309 Leucyl aminopeptidase (aminopeptidase T) + Term 29613 - 29667 17.2 28 13 Tu 1 . + CDS 29683 - 29859 118 ## gi|293382832|ref|ZP_06628753.1| hypothetical protein HMPREF9377_00708 + Prom 29862 - 29921 13.6 29 14 Tu 1 . + CDS 29976 - 30557 230 ## EF2795 LysM domain-containing protein Predicted protein(s) >gi|284795525|gb|ADDQ01000024.1| GENE 1 3 - 1200 1041 399 aa, chain - ## HITS:1 COG:no KEGG:EF2174 NR:ns ## KEGG: EF2174 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 12 350 8 364 893 198 38.0 2e-49 MKRINKISVITMLMLTTLVPSSSIVYAIDASSSESAEEVISADTAETLNSTSSSEETSTE SSSSTLSSVPSETKNSLDTSGATDTRQSTDTEETSETTSSSEANKKDEDEIVITEDMNKP MGSGMKGTRRKRAAYAYGDPISITEANRPPKNFIDVSSWNGSLSVANYQTMKSYGIGGVV VKMTEATTYQNPERFAQVQNANAVGIKVSAYHYSHFTTKDQAIKEANYFADTAINTGLPK DTLMINDAEEGSMNNGQLTANSIAFANQLKARGFTNVLHYSMAAWFTEGVLSPTQLGTEN IWIAQYPFEPTADQLWHKNEGYAAWQWSSLLTIPGVDIGVGVFDINADYTGRFTSSGGKQ YDVILDEKQYDYTARVKPAAESGKHGVFNGIMNTAPGIV >gi|284795525|gb|ADDQ01000024.1| GENE 2 1520 - 2362 574 280 aa, chain - ## HITS:1 COG:SP1367 KEGG:ns NR:ns ## COG: SP1367 COG3475 # Protein_GI_number: 15901221 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: LPS biosynthesis protein # Organism: Streptococcus pneumoniae TIGR4 # 7 279 5 275 281 338 59.0 9e-93 MQEMTQTDLKEIQAVTLTMSKYFVQFCQENNLLCYFCGGGCIGAVRSQGFIPWDDDLDFF MPRPDYEKLKKLWPQKADINRYPLLVASKTYNDHNSFITIRDTATTFIKPYQEDLDIPHG LPIDIFPLDGAPEGKLRRKIQKFWALIYALFCSQVVPEKHGGLMATGSKVLLGIFSSSKI RYHIWRFAEKRMTKYSFGSTPYVTELCVGPRYMGNIYHLEDFKSAIFVPFEDTKMPIPVG YKRYLTQVFGDYMQLPPEEDRQPHHEALIVDTKKSYTEYL >gi|284795525|gb|ADDQ01000024.1| GENE 3 2378 - 3211 794 277 aa, chain - ## HITS:1 COG:HI1695 KEGG:ns NR:ns ## COG: HI1695 COG0463 # Protein_GI_number: 16273582 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Haemophilus influenzae # 7 274 4 267 267 206 40.0 5e-53 MEKVPVSVLLSIYIKERPEYVIACLDSIFNQTVKVDEIVLVEDGPVTEEMTVIVDKYKET YPEVLHVLPLEKNVGLGKALAEGVKACRNELIARMDADDIMKTDRIEKQWQLFQKNPNLV ITGSNIIEFDGNIENVLGYRNLPHSNEDIREFSKRRNPFNHMTVMYKKSDILEVGNYLPM SGFEDYYLWVRLLKKGKEAQNLSEHLVYARTGSDMYARRGGWQYFKSGLKGRKAIYQAGL GSFKDFFVSSSAHVVVSLMPNNLRGKFYEKFLRKDND >gi|284795525|gb|ADDQ01000024.1| GENE 4 3332 - 4729 1328 465 aa, chain - ## HITS:1 COG:CAC2330 KEGG:ns NR:ns ## COG: CAC2330 COG2148 # Protein_GI_number: 15895597 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sugar transferases involved in lipopolysaccharide synthesis # Organism: Clostridium acetobutylicum # 1 450 1 449 461 282 36.0 8e-76 MTSKSEWSNARRIVIILADVLLYNLSIILGFMVKFGREIPSFNFVAYEKSAIYISIFFIF LNLLLGAYIFYNRKISDIIFVTVIGQILMTLTIMIVTFAGRWFTFPRSVLGYSFIIGIIV LSLWRILVYYLYLKVSNERKVVLLGKENQVMRSIQNFMSDKNNKHKVTSVVVSNYYENLK KIIDEIDIVYISSNVDENEKVKLYQLIVKHKKKIFLDTSFENLIMLKPNMMNFEDESIIE VSNFEIQPEENFIKRLFDILVSVCLFVITSPLMLIAAILVKATSPGPVIYKQTRITLDQR EFSILKFRTMSATAEAKSGPVLSTSNDSRVTTVGKYLRALRIDELPQLINVIRGDMSIVG PRPERPFFVDQFNQENPNYYLRHNVRAGITGYAQVYGKYASDYNSKLNFDLLYIKNYSLL LDMKILLQTIKILFDKVSSRGLDESEEREELTMDYCKENAIRIYR >gi|284795525|gb|ADDQ01000024.1| GENE 5 4835 - 6136 921 433 aa, chain - ## HITS:1 COG:no KEGG:EF2178 NR:ns ## KEGG: EF2178 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 433 1 433 433 804 99.0 0 MGKVLNRIGRLILLVTMIGSYTMWVVGIDAPVTKYMYANSSILLLIAVILVLLLNCTKLK FIDWLTVALALATWLLFHFTESIRHSTMQTDTMIPLIILLVLCFKVCVFDRVDQTLLLIV SLVALSATLYRMSVELPQLIPADEIFKESNKLESIWINTNTTGATLMFSTMMASSLIKAY RNKVFNLLLLPVYIGGVLGTWVSQSKTSFAILVGFILVDNLLPKRFLQRSKVCLFGFVGV AALGPLLFYLCAESDTVDLFTGRERIWHEFFAKWLSDPQHIKVGMEPFVASWKPLGTHNA FLFTLSNFGVIGYLILFGFLVSMILLIGFRKKTLDRLQVSLLLGFLLIWIHSFMEDILLA PHWMPIVYSFLGLAFYFRPEKKRGRHERPTTPKRRKRMKQTSPVSNEERPIAPVDEEGWD QPEELSRVQRHRR >gi|284795525|gb|ADDQ01000024.1| GENE 6 6165 - 8135 1796 656 aa, chain - ## HITS:1 COG:no KEGG:EF2179 NR:ns ## KEGG: EF2179 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 656 1 656 656 1246 99.0 0 MEQQLTTRKEKQPLRNQAEQSARLVDHLLRWRYLLAAVIFILLVAFKVHGSSLNMWDAYV SEYADGQKSSLIAGEPRGVRSDEWLVQTPFSLSQTQTGLKTHNDVITLNGQDMVVGYNSP AWNLATLAKPFTWGYVLLGKEYGLSWYWNLKLIGLILFSFEIGLIVTRRNKYLALLASVW IPFSSALQWWFVSPVGDLVFFGLGFLVGIYNYFYYHSSVRRRVICAITAVIMASGFVLVI YPALQVPLGYLILLFLILFFLEFREKIKLDKWDGVLIGGALLITAIIVGGSLYGSLDSLK AVMDTAYPGKRVSLGGDMPKRDILLFLTNWKMPFQDVPYSNNSEISSFYQLFFVILPLSP FIFYKKIKENIYGFVLFVYCLFNLVWMSVQFPTIFAKLTLWSYVPEQRAMLSFGFAAVLL SLWFIDYLWNRQAKIPMMAWLGALGLNVVLYFFVLYTGNLRLYVTRMDIIGVLVVATVLI VALFKRWRTLFVLVLLGIIMVSGAFVNPISRGVSAVYGKKLAVEVEEINKKDPNQLWVGE RLMYGYLPMLGVHTFNGVAFTPDLEAWKPLDPKGKDTFIYNRYAHINVEVGNQAPVLELM QKDAIIARLSPEKLKEYGIKYAVVYKPLEPLDTPTIHFEKLYGPDQNGAYIYRIND >gi|284795525|gb|ADDQ01000024.1| GENE 7 8169 - 10310 2309 713 aa, chain - ## HITS:1 COG:alr4487_2 KEGG:ns NR:ns ## COG: alr4487_2 COG0463 # Protein_GI_number: 17231979 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Nostoc sp. PCC 7120 # 180 573 1 392 519 212 33.0 3e-54 MNEDIKVIFDSIYRDKTTNNLTITGWALDTITKESPTFTINNENQVSAYNIQRVLREDVN QIYQTEPAIEAGFVVTLEGIKQKKVLPFHFQSSAHVVTVDFPLNKKYPVIPGTEDKVTRL WIKAKKGFKYMAKNGISHTIQRAKIEKLRNQASYPNWLARNEVLDIEAMTQEIATFHYQP KISIAMPVYNVEEKWLRLCIDSILNQVYTNWELCMADDASTDPNVKKILTEYQQLDERIR VVFREQNGHISEATNSALAIATGEFVALLDNDDELAINAFYEVVKVLNENPELDLIYSDE DKIDMDGNRSDPAFKPDWSPDLLLGTNYISHLGVYRRSILEEIGGFRKGYEGSQDYDLVL RFTEKTTKERITHIPKVLYYWRMLPTSTAVDQGSKGYAFEAGLRAVQDALVRRGINGHAT HGAANGLYDVYYDIESEKLVSIIIPTKNGYKDVQRCVSSIIEKTTYQNYEIIMADNGSTD PKMHELYAEFEQQLPGRFFVESIDIPFNFSTINNRAAKKAHGEYLLFLNNDTEVITENWL TLMVSFAQQERIGCVGAKLLYPNNTVQHAGVILGLGGVAGHGHYGYPHGDLGYFGRLAIN VNYSAVTAACLLMKKADFDAVGGFEEAFTVAFNDVDLCLKVQALGRDNVWLHEAELYHFE SQTRGYDDKGKKKKRFEQEKVMMEEKWGPLIENDPFYNPNLTRDIPNFSLRID >gi|284795525|gb|ADDQ01000024.1| GENE 8 10322 - 13465 3266 1047 aa, chain - ## HITS:1 COG:alr4487_2 KEGG:ns NR:ns ## COG: alr4487_2 COG0463 # Protein_GI_number: 17231979 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Nostoc sp. PCC 7120 # 554 791 1 239 519 183 38.0 2e-45 MKYDFEMETDESTSVGKIVAQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELY DHVSQFSTDAFYGNIDENDWVEYFAGKTFDYIVFADVLEHLMNPQSALAKVKPFLKPGGQ ILITFPNLAHNSVLIDLFNNRLTWNETGLLDATHKSFYLQEGFEKVFAEVGLYIAKEDFT FNQVGYNEIPTTYEALPVEVQAAFKARPFGEVYQYFFALTAEPVEQPERVTPVNSYNEKN VHILINCGEEKETELDQPVDLQKPETKQFQLKIPEDVQLIKLFPSLTGAIVKLSMTIDGE TVPVAATNAFLVQENIYYFLDTQVPVIEVTDAQMAGKDLTVDIDYFFEGNYSERENTFIH ALLDERNQFLEEMNKQTETAPMPTGKYKRITLTKFDKMINLTIDDIARDVENNVSVIRGW AYDKQTNYPLRFSIAEASESVTYTVETEYRRDVIDMFELEGDQDYGFVITIKDPEDLPAY TLNIDTKSGQKVQYVVERPNMVQPGTKFDRAWRSIQTRGLMGSVKWYFKRQEKAESPVDV EAVLAEIKTFQFQPKISVAVPVYNVEEKWLAACVSSLQNQYYENWELCLADDASPSEHIK PMLEKYKELDQRIKVIYREENGHISEATNSALSIATGDFVGFMDNDDELAPQALYEVVKA LNTDPTIDFLYTDEDKITENGRRFNAFYKSDWNPELILNHNYITHFVVVKRDLLEKVGGL NSAYNGAQDYDFVLRATEQATKIKHIPGMMYHWRAIESSTALNPESKGYAYVAGQKAVQA ATERRGLKAQVEIAEFYGSYKINYLYDHVPMVSLIITNDTENMSSYLRQLLEKTAYTNYE ILLPARFENQINIQNDRLRYVSTETRHGMIQAAKGEYVALLNAGLVPTKNDWLKELMNIG QQETSGLVTGRVVDARYRVETVGVSVDTDKGRLLYPEKGTPGKSLGYYYRIALPRNIQAA TEDCLLFNKQLYLNLEGINESLGKEWMGVDLSLQFASAGKRNVYVSYAILKADEKMQNHD KKGSYKELAEKWTAETLVDPYRNPKHL >gi|284795525|gb|ADDQ01000024.1| GENE 9 13455 - 14672 1293 405 aa, chain - ## HITS:1 COG:PA1386 KEGG:ns NR:ns ## COG: PA1386 COG1134 # Protein_GI_number: 15596583 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate transport system, ATPase component # Organism: Pseudomonas aeruginosa # 11 238 13 240 422 242 49.0 1e-63 MSEYAIDIQHITKTYNMYKKPSDRFKEALSPTKKSYHDLFYALDDVTMQIKKGEMIGFVG ENGSGKSTMLKIITGVLTPTSGSMVINGKISALLELGSGFNPEYSGYENIFLNGMVLGFS REEMEERVQDVIDFADIGDHLYQPVKTYSSGMFVRLAFAVAINVDPDILIVDEALAVGDL EFQLKCMEKFTEIKNSGKTILFVSHDVNSIRRFCDRTFWLQHGKVVEYGDTMDVTTNYEN FLKKKSIKTVDREATMKDETPTPDIIEVDHAELLNADYEPLEMVTQDEKVIVKIEYTVKN DQIKKPVCGVAIRTVDNHYVCGLNTLLDGVQIPWKKGRNVFYLEYEKMSLLTGEYYFDIA FFEEHATVPLVYKTKYVTMFITGRYAGEGIVILDHKWKDTTKDEV >gi|284795525|gb|ADDQ01000024.1| GENE 10 14685 - 15479 681 264 aa, chain - ## HITS:1 COG:BS_tagG KEGG:ns NR:ns ## COG: BS_tagG COG1682 # Protein_GI_number: 16080624 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate export systems, permease component # Organism: Bacillus subtilis # 18 264 17 275 275 143 33.0 3e-34 MFKETFSIFKNIFQNKKLLLQFSFNDFKAKYAGSALGIVWAFLTPLVTVLTYWFVFSVGL RSRAGDNMPFIVYLVTGMVPWFFFSDSLLSATNVFREYSYLVKKVVFNVQILPTSKILSN LYTHLFFILIGFVITTANGYYPSLYSLQLIYYLACLLVFLTAITWITASTQPFLPDIMQF INIIMQTVMWTLPILWQPTGMIATILKINPLYYIVQGYRESYLGGAWFWEHWQYSLYFWG VTIVLLLIGSTVFRRLKPHFSDVL >gi|284795525|gb|ADDQ01000024.1| GENE 11 15726 - 16067 367 113 aa, chain + ## HITS:1 COG:no KEGG:EF2184 NR:ns ## KEGG: EF2184 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 113 1 113 113 112 100.0 3e-24 MVLFIIYVFLSSAGLVLFKLGSSSLNIQLQQTIFSMNISLISLLGLFCYLISFILWMLII SRSDVSYIVPLGVACTNIAILIASNLILKETITTNALIGAVVIIVGIVIMNLK >gi|284795525|gb|ADDQ01000024.1| GENE 12 16141 - 16491 479 116 aa, chain - ## HITS:1 COG:no KEGG:EF2189 NR:ns ## KEGG: EF2189 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 116 1 116 121 166 95.0 3e-40 MLPTVLWLALFLFAIGFFLYIIRGINKNIFLLKNALIWLLISIVLIIFAIFPHVAEWLAM AFGFETTSNFLLSAAVIVLLIMEIKNSVLISKHENRIKTLLQELSIMKSEENKKDR >gi|284795525|gb|ADDQ01000024.1| GENE 13 16491 - 17216 775 241 aa, chain - ## HITS:1 COG:L11285 KEGG:ns NR:ns ## COG: L11285 COG0463 # Protein_GI_number: 15672191 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Lactococcus lactis # 2 237 5 237 241 254 55.0 1e-67 MKVLLIIPAYNEEENILRTIASIETFKQEVTHFQHELDYVVINDGSTDGTKQILEANQIN AIHLVLNLGIGGAVQTGYKYALENEYDVAVQFDGDGQHDINSLPVLLEPLAEDKCDFSIG SRFIPGNEAAFQSTKMRRFGIRLLSFCIRMASGKTIYDVTSGYRAGNRKVIAFFAKRYPT NYPEPESIVHLIKKRFVIVERPVNMMERLGGVSSIRALASVKYMLEVGSAILIAAFMKEG D >gi|284795525|gb|ADDQ01000024.1| GENE 14 17275 - 18117 1061 280 aa, chain - ## HITS:1 COG:L320 KEGG:ns NR:ns ## COG: L320 COG1091 # Protein_GI_number: 15672181 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-4-dehydrorhamnose reductase # Organism: Lactococcus lactis # 1 276 1 281 299 353 64.0 2e-97 MILITGGNGQLGTELRHLLDEQGIEYVSTDSTELDITDADSTLAKVKEIQPSVIYHCAAY TAVDKAEDEGKELDEKVNVDGTRHVAEAAKAVGATLVYVSTDYIFDGTKKEGVYAVDDQP NPLNEYGRTKLLGEQAVQEILDDYYIIRTSWVFGQYGHNFVFTMQKLAETRDQLTVVDDQ FGRPTWTRTLAEFMAFVIAEKAPFGVYHLSNENSCSWYQFAKEILKDTEVEVLPVDSTQF PQKAQRPQYSVMDLSKTEALGFKIPTWQEALAQMLENVQQ >gi|284795525|gb|ADDQ01000024.1| GENE 15 18210 - 19238 1195 342 aa, chain - ## HITS:1 COG:SPy0936 KEGG:ns NR:ns ## COG: SPy0936 COG1088 # Protein_GI_number: 15674955 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-D-glucose 4,6-dehydratase # Organism: Streptococcus pyogenes M1 GAS # 2 342 3 343 346 582 81.0 1e-166 MKKIIVTGGAGFIGSNFVHYVVKNHPEVHVTVLDKLTYAGNEKNLEGLPSDRVELVVGDI ADAELVNRLVAETDAVVHYAAESHNDNSLNDPFPFVQTNLIGTYTLIEACRKNNVRYHHV STDEVYGDLPLREDLPGHGEGEGEKFTAETPYNPSSPYSSTKAGSDLLVKAWVRSFNLQA TISNCSNNYGPYQHIEKFIPRQITNVLSGITPKLYGAGKNVRDWIHTNDHSSAVWAILTK GQIGETYLIGADGEEDNKTVMELILELMGQPVDAYEHVNDRAGHDLRYAIDSTRLREELG WEPEFTNFREGLAETIKWYTENEDWWRADKEAVEAKYAQNGQ >gi|284795525|gb|ADDQ01000024.1| GENE 16 19263 - 19835 830 190 aa, chain - ## HITS:1 COG:CAC2331 KEGG:ns NR:ns ## COG: CAC2331 COG1898 # Protein_GI_number: 15895598 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes # Organism: Clostridium acetobutylicum # 6 178 9 180 185 184 55.0 6e-47 MKVIDTKLQDVKIIEMDVFGDHRGFFTESYSKAKFAEHGLDFDFVQDNHSLSTEAGVLRG LHFQKGEAAQTKLIRVVTGAVLDVIVDIRKGSPTYGQWEGYILSEHNHHQLLVPKGFAHG FVTLTPNVNFMYKCDNYYNAAADGGIAFNDPALAIDWPIAPEKAITSEKDQKHPTLKEFE AENPFIYGEI >gi|284795525|gb|ADDQ01000024.1| GENE 17 19848 - 20714 1109 288 aa, chain - ## HITS:1 COG:L197041 KEGG:ns NR:ns ## COG: L197041 COG1209 # Protein_GI_number: 15672176 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-glucose pyrophosphorylase # Organism: Lactococcus lactis # 1 285 1 285 289 461 79.0 1e-130 MKGIILAGGSGTRLYPLTKATSKQLMPIYDKPMIYYPMSTLMLAGINEILIISTPEDTPR FESLFGDGHDLGIHIEYAVQESPDGLAQAFIIGEEFIGDDSVCLVLGDNIYYGGGLSKML QRAASKESGATVFGYHVNDPERFGVVEFDEEMRALSIEEKPAQPKSNYAVTGLYFYDNEV VEIAKGIKPSERGELEITDVNKVYLEKNKLSVEVMGRGFAWLDTGTHESLLEASTFIETI EKRQNLKVACLEEIAYRMGYITKEQLVELAQPLKKNGYGQYLLRLAAE >gi|284795525|gb|ADDQ01000024.1| GENE 18 20836 - 21549 737 237 aa, chain - ## HITS:1 COG:DRA0037 KEGG:ns NR:ns ## COG: DRA0037 COG0463 # Protein_GI_number: 15807707 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Deinococcus radiodurans # 4 206 10 222 328 116 31.0 5e-26 MISVCIATYNGEKYLAEQLDSILLQVSEEDELIISDDGSTDHTLEILRTYAANYPQIQLL QGPGQGVIANFAFALTHTKGEVIFLADQDDVWLPNKVTTVTEYFETHPDIQVVISDLKIV DADLQVTNPSYFKFRKVKPGFWRNAIKSGYIGAGMAFRQEMKNVILPIPPEVPMHDMWIG LLAARKKQTGLIKEPLVLYRRHGANVSPIITKTSFQQKLNWRVNLLKALHQRLKEQR >gi|284795525|gb|ADDQ01000024.1| GENE 19 21553 - 22380 788 275 aa, chain - ## HITS:1 COG:no KEGG:EF2196 NR:ns ## KEGG: EF2196 # Name: not_defined # Def: glycosyl transferase, group 2 family protein # Organism: E.faecalis # Pathway: not_defined # 1 275 1 275 275 535 99.0 1e-151 MSQRLAVVIVLYQMKMADTPNYLLLKEVVDHPELHLFIYDNSPLPQEDALFLQQNVTYRH NPDNPGLATAYNEAIAFSQANQCELLLLLDQDTEVPASYFDTLIIMPLDPTVAVYVPIVE ANGQQISPVYSDQYVGLKGAKPTAGIANQPLMAINSGTVITAETLRWLEGFSEEFPLDYL DHWFFYQLNQANKKIEVLPIHLKQELSVLDYRTMSPQRYRSIIEAETLFYRRYDQEKFSH HRRHLFLRSSKQFLTVKNRQIWRQTLAEFLKLMKG >gi|284795525|gb|ADDQ01000024.1| GENE 20 22380 - 23162 649 260 aa, chain - ## HITS:1 COG:RSc0688 KEGG:ns NR:ns ## COG: RSc0688 COG1216 # Protein_GI_number: 17545407 # Func_class: R General function prediction only # Function: Predicted glycosyltransferases # Organism: Ralstonia solanacearum # 5 257 4 251 275 109 29.0 6e-24 MQEMVTISIVTYNSRYIFNVLDQLKAELGTDSIYDIHIYDNYSETAYLEKLTTYEPFITI HRAEENQGFGHGHNQVLFNASTKYAIIFNPDVLVTKDVLDRLLDRIKIDKNIAVVSPKVL NEDGTTQYLVRQKLDVFDYMLRFIPFQFVKKIFDKRLSIYECRDLSDTETTDIKMGSGCF MLIDREKFVEIGGFDERFFMYFEDNDLCLRFGKAGYRILYTPFETVVHMYEKGAHKSRKL FKIFMQSMGKFFNKWGWRFF >gi|284795525|gb|ADDQ01000024.1| GENE 21 23290 - 24426 903 378 aa, chain - ## HITS:1 COG:L35751 KEGG:ns NR:ns ## COG: L35751 COG0472 # Protein_GI_number: 15673776 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Lactococcus lactis # 4 365 10 397 443 379 53.0 1e-105 MSLFIYEVLIRLFMTFILSLLLTPLVKLLAFRIGAYDAPGERRINTKNMPTAGGLAIYIA FASSCLLIFRSIIPQDYIWPIILAGGMVVLTGLIDDIKEITPMKKTIGILLAALVIYFVA GIRIDFVTLPVVGMIDLRWFSLPLTLLWILAITNAVNLIDGLDGLASGVSIIGLTTIGIT GYFFLHAKTVYIPIVIFILVASIAGFFPYNFYPAKIFLGDTGALFLGFMIAVMSLQGLKN ATFITVITPMVILGVPITDTVYAIIRRLLNKKPISSADKMHLHHRLLSLGFTHKGAVMTI YALALVFSFVSLLFSYSSTVASILLIVFCLIGLELFIELIGLVGEGHQPLMYLLRILGNR EYRQEQMKKRLGKHSKRK >gi|284795525|gb|ADDQ01000024.1| GENE 22 24533 - 25444 817 303 aa, chain - ## HITS:1 COG:lin1818 KEGG:ns NR:ns ## COG: lin1818 COG1295 # Protein_GI_number: 16800885 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 9 275 10 276 289 176 35.0 7e-44 MKFLDNIKKNQSLMRFIETTQSHMVTAEIGNSSVVVAYYLLLSLFPLLIAVGNVLPYLRI DPNSVLPYIAEAIPKDVYKNLEPAIRSLLTQRSGGLLSVSALAAFWSASQSINALQNAMN KAFGVEQRKNFILVRVVSFLVILLFMVAIVGVVVILGLGQYIIELLQPIFHYSTSVIDTF QALKWPLTTVVLLVIMCLIYAVVPNRKLSLRSILPGAIFSTVGWMLLSQIFGLYVKYFSS RIASYQIIGSFIILMLWLNFAATIIILGAIVNAVVDEYLSGDKEKKQPSFEQRLFRWFKK KNK >gi|284795525|gb|ADDQ01000024.1| GENE 23 25460 - 26224 825 254 aa, chain - ## HITS:1 COG:lin1821 KEGG:ns NR:ns ## COG: lin1821 COG0024 # Protein_GI_number: 16800888 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Listeria innocua # 1 250 1 250 252 360 67.0 1e-99 MITLKSPREIEMMDESGELLADVHRHLRTFIKPGITSWDIEVFVRDFIESHGGVAAQIGY EGYKYATCCSINDEICHGFPRKKVLKDGDLIKVDMCVDLKGAISDSCWSYVVGESTPEID RLMEVTKKALYLGIEQAQVGNRIGDIGHAIQTYVEGEGYGVVRDFVGHGIGPTIHESPMI PHYGEAGKGLRLKEGMVITIEPMVNTGTWRMKMDPNGWTAYTEDGGLSCQYEHSLAITKE GPRILTSQGEELTY >gi|284795525|gb|ADDQ01000024.1| GENE 24 26399 - 26842 740 147 aa, chain + ## HITS:1 COG:SPy0721 KEGG:ns NR:ns ## COG: SPy0721 COG0716 # Protein_GI_number: 15674777 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Streptococcus pyogenes M1 GAS # 1 145 1 145 149 174 74.0 5e-44 MTLAKIVYASMTGNTEEIADIVAEAFEDLELEVEIDECTQVDAADFEEADICVVATYTYG DGDLPDEIVDFYEDLQEIDLSGKIYGVCGSGDTFYDDFCKSVDDFEAVFTQIGAKKGADS VKVDLAAEEDDIQRLEEFAKKLATAAE >gi|284795525|gb|ADDQ01000024.1| GENE 25 26916 - 27389 465 157 aa, chain - ## HITS:1 COG:CAC0262 KEGG:ns NR:ns ## COG: CAC0262 COG3476 # Protein_GI_number: 15893554 # Func_class: T Signal transduction mechanisms # Function: Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) # Organism: Clostridium acetobutylicum # 3 157 10 165 170 82 35.0 4e-16 MNRVKDKRLWLSIVGITGLGLLSGLFSVNAREYYQALRLPSFAPPGWLFGPVWLVLYIFM GITFYFILVHPNKQQKKRMITLFILQFIANFFWTFFFFSLQNNLLSVIDISLLWLLLIVQ QWDYLRYKLITRGWLMIPYILWVTFAAALNYSILFLN >gi|284795525|gb|ADDQ01000024.1| GENE 26 27548 - 28120 710 190 aa, chain - ## HITS:1 COG:FN1004 KEGG:ns NR:ns ## COG: FN1004 COG1309 # Protein_GI_number: 19704339 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Fusobacterium nucleatum # 1 175 1 174 188 69 27.0 3e-12 MARKKTITKEQILTAAYEVVATEGFSKFTARNIANKMKCSTQPIYLEFKNMDDLRDALFQ KIHKYLAKEVFPVKHTGNTIVDLALNYIHFATSESKLYRALYLEEYGGGKKMQEFSYHYF TEAVKADPEYANLNDVQIDSLHMGTWVVATGVAALMTSGIIHPSEEQIIHLMKDSIEAIL ERDEPIDIDL >gi|284795525|gb|ADDQ01000024.1| GENE 27 28371 - 29609 1608 412 aa, chain + ## HITS:1 COG:SP0278 KEGG:ns NR:ns ## COG: SP0278 COG2309 # Protein_GI_number: 15900212 # Func_class: E Amino acid transport and metabolism # Function: Leucyl aminopeptidase (aminopeptidase T) # Organism: Streptococcus pneumoniae TIGR4 # 1 412 1 412 413 515 62.0 1e-146 MTLENFNENLKKYARLIAETGVNVQDNHTVVLQISVDQAPLARLITEEAYRLGAAEVIVQ WSDETIQREFLAHAATDRIENVPQYKIDQTDDWIAKGASRISVVSSNPDALAGVDAQRVA AFQAANGKALVNLRKATQANKVSWTVVAAASEGWAAKVFPELATSEEQVDALWNEIFKTT RIYEENPVIAWDIHDKKLQEKAAELNEQQFTALHYTAPGTDLTIGLPKNHLWEGAGSYNA RGEEFMANMPTEEVFTAPDSRRVDGYVSSTKPLSYAGTIISGMKFTFKDGKVVDFSAEQG EEALKNLLAIDEGAKHLGEVALVPDPSPISQSGLIFYNTLFDENASNHLAFGSAYAFNLQ GGTEMSEEELAEAGLNRSQTHVDFMVGSDKMNIDGIKEDGTIVPVFRNGDWA >gi|284795525|gb|ADDQ01000024.1| GENE 28 29683 - 29859 118 58 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293382832|ref|ZP_06628753.1| ## NR: gi|293382832|ref|ZP_06628753.1| hypothetical protein HMPREF9377_00708 [Enterococcus faecalis R712] # 1 58 31 88 88 90 98.0 3e-17 MIRSLFNQTHGGTCLVFQAYFTTIYSLVKTLLNQEYYNLILYIFLQPFTTFAPFLPLY >gi|284795525|gb|ADDQ01000024.1| GENE 29 29976 - 30557 230 193 aa, chain + ## HITS:1 COG:no KEGG:EF2795 NR:ns ## KEGG: EF2795 # Name: not_defined # Def: LysM domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 22 181 124 285 354 92 38.0 6e-18 MKKSLSLVFALLLLTACTNENTKTENTKGSSTTVTSTVKKSSNYSINEKNILSTNTTTTS TADRKSSQTEEEQSHTEDPASLSSFVGGWGIPQSGNFFFINPDGKMSGSGQPNGVIQSPN FLSNADGSITMNFIINNTSLSFTKNLDGTLSTENQIYSYLGNITLEQWLELKNKGQMSSE QQTGILEASSQTP Prediction of potential genes in microbial genomes Time: Sun May 15 12:30:11 2011 Seq name: gi|284795524|gb|ADDQ01000025.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont63.1, whole genome shotgun sequence Length of sequence - 14000 bp Number of predicted genes - 14, with homology - 12 Number of transcription units - 10, operones - 4 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 312 - 371 7.4 1 1 Op 1 . + CDS 396 - 1178 612 ## COG1192 ATPases involved in chromosome partitioning 2 1 Op 2 . + CDS 1171 - 1527 408 ## EF_B0065 hypothetical protein + Term 1560 - 1603 8.9 + Prom 1704 - 1763 7.0 3 2 Tu 1 . + CDS 1787 - 2800 656 ## EF_B0001 replication-associated protein RepA + Prom 2825 - 2884 12.7 4 3 Op 1 . + CDS 2931 - 3599 620 ## COG1266 Predicted metal-dependent membrane protease 5 3 Op 2 . + CDS 3642 - 5270 1567 ## COG4166 ABC-type oligopeptide transport system, periplasmic component 6 4 Tu 1 . - CDS 5273 - 6256 381 ## EFA0004 TraA protein - Prom 6311 - 6370 12.3 + Prom 6342 - 6401 7.3 7 5 Tu 1 . + CDS 6424 - 6495 66 ## + Term 6564 - 6598 -1.0 - Term 6650 - 6686 0.2 8 6 Tu 1 . - CDS 6930 - 7019 60 ## - Prom 7135 - 7194 3.4 9 7 Op 1 . + CDS 7068 - 7448 169 ## EF_B0007 pheromone-responsive regulatory protein R 10 7 Op 2 . + CDS 7448 - 7705 136 ## gi|255973304|ref|ZP_05423890.1| prgS protein + Prom 7966 - 8025 5.8 11 8 Op 1 . + CDS 8054 - 8323 146 ## EF0145 hypothetical protein 12 8 Op 2 . + CDS 8334 - 11006 3405 ## EFA0052 surface exclusion protein Sea1 + Term 11015 - 11058 7.2 13 9 Tu 1 . + CDS 11603 - 11926 487 ## EFA0048 hypothetical protein + Term 11935 - 11972 7.0 + Prom 11965 - 12024 5.2 14 10 Tu 1 . + CDS 12242 - 14000 1835 ## EF_B0011 aggregation substance PrgB Predicted protein(s) >gi|284795524|gb|ADDQ01000025.1| GENE 1 396 - 1178 612 260 aa, chain + ## HITS:1 COG:BS_soj KEGG:ns NR:ns ## COG: BS_soj COG1192 # Protein_GI_number: 16081149 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Bacillus subtilis # 1 250 1 248 253 188 41.0 1e-47 MARIISVANQKGGVSKTTTSINLGAALHFTFNKSVLVIDMDPQGNATDNFGFDIDGTNVP TIYEVLKDEASITEAILNYKGIDVIPADIALSSAEREFTQVGSEHRLKRVLQPIEENYDY IIIDCPPSLGILTVNAFTVSDEIIIPVEAAYFSLKGLVKLNETIETVKEYTNESLIIRGV LFTKYNERFNISKEMNKTANQISDALHVNIFDTYIRRTITVDEAQAAGSDLISFNKTSTA EDDYIQFTKEFLEKVGDLNE >gi|284795524|gb|ADDQ01000025.1| GENE 2 1171 - 1527 408 118 aa, chain + ## HITS:1 COG:no KEGG:EF_B0065 NR:ns ## KEGG: EF_B0065 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 118 1 118 118 178 100.0 6e-44 MSNNRGKSAAERLLGAGKEDTNPTKATTSNEKELKTTHEHIVMNKKNIEKLIKQQGNSKR NADSIRINPILANALKYWTSIGEPEKSKPDVIEETLLKSIPEEYLIKGYEMAKKQNKI >gi|284795524|gb|ADDQ01000025.1| GENE 3 1787 - 2800 656 337 aa, chain + ## HITS:1 COG:no KEGG:EF_B0001 NR:ns ## KEGG: EF_B0001 # Name: repA-2 # Def: replication-associated protein RepA # Organism: E.faecalis # Pathway: not_defined # 1 335 1 334 336 563 94.0 1e-159 MNDFQFISANETYRNLYYQLPKVLFTSEFYKTMSNDSKIAYAMLQDRCEYSIQNNWIDQD GHIYFIFTRNELMDILGCKENKIAKIKKELKDKNLLYEKRIPPKKLSTGEFKNYPNRLYL GKLEVSATDVYAISNASYTNEFPESGKNQPSDKHDKIGISFESGKNQRPEESNNTSTLFE SGKNQPNLYLTNSLDTIDTIDTEKERLQQQLLLDQFSEVQEHTFLSKNSLKFIAAFSDTI QEAHEMVGTIIRAKTKVEKEYNIVLIGEDYQEEIDKCLRRVMHKIKTDSTVKSPKGLFYK SFYNLFVECTIEKKSHLNKNSTDNTPEITTHNWIEYQ >gi|284795524|gb|ADDQ01000025.1| GENE 4 2931 - 3599 620 222 aa, chain + ## HITS:1 COG:SP0288 KEGG:ns NR:ns ## COG: SP0288 COG1266 # Protein_GI_number: 15900222 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Streptococcus pneumoniae TIGR4 # 41 222 40 221 230 70 30.0 2e-12 MEYIKRFFIVIGLFLLSQIGMFTYGTLKQSSLQVGQGTMPLLSTLILIVIFIMNIGLLLV LANKLELLNFDSKFLNKKNILIIVIGVVIARLVAILGTILLNNQGIDSTANDAAINNLFT GENPLLIILILGISAPIMEEIVFRAGIIGYFLKDWPILGIALSSISFGLVHGPTDIISFF MYALIGLVLSIAYFKTSRLEVSILIHFFNNLIPAIVIAFGLI >gi|284795524|gb|ADDQ01000025.1| GENE 5 3642 - 5270 1567 542 aa, chain + ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 1 537 1 544 549 327 37.0 5e-89 MKKTEKILFLGFSALMFILIGCSNKDNLQENKKSSAVEQTANLTAATPIQSLDPATAVDQ TSITLLANVMEGLYRLDKKNQAEPALAEKLPDISKDGKTYTISLRKDATWTDKTPVTAED FVFAWQRVVDSNTASQNVGLFAPIENAEEISKGSKAKESLGVKAVNNHTLQIALKEPTPY FTNLLALPAFLPVNHKFADKHKKDYGTSKDTISTNGAFNLTNLEGLGTSDSWVIEKNTNY WDNKNVSMNTIHFQVIKEINTGVNLYKDGQLDEAPLGGEYAKQYKSDKDYSSSLLATSMY LELNKKPKDSILKNKNLRKSISYAIDRASLVEKLLDNGSIASVGLVPKKLVYDPKTKKDF ADQDLVGYDKEKANKYWENAQKELTTPNNLKLDILVGDGEFEKKAGEFLQNQLQESLKGV TVTVTPVPANAHIEKLSKGDFSISLIGWQAGYADPLSFLANFKTNSPMNYGGYESNEFDI LLKDTSDKRLKSLKEAEELLIDDAAIVPIIQTGSSKLINPNLKDINLHSVGSRYDYREMK KE >gi|284795524|gb|ADDQ01000025.1| GENE 6 5273 - 6256 381 327 aa, chain - ## HITS:1 COG:no KEGG:EFA0004 NR:ns ## KEGG: EFA0004 # Name: traA # Def: TraA protein # Organism: E.faecalis # Pathway: not_defined # 1 320 1 318 319 188 38.0 3e-46 MYLNELMKLCRKEFGENQEEFYKDIFSRRSASSFEIHNQHALQIKDIALLSDRSGLSFHE LINYCKEDFASDFDKDLDYFRTTLDNYAKTQDIELKKNLEELYSKVVSLHFTSLKYMNLY FMMKLILSDKIDKISKIDYPDLLDVKKIFQNFSKFTLFHYKILANISSEFSFSELKSLYD ELFPISENSTSELKEIAALCLNNILAGSFLEKRYEDILPILNIYNELLTHFPSYKYKINY IHNKNLYLYVTTKNLKYLNKVVSYIDLLEDIEGVEIAEQVRTSLEHLLSQEGDEKGKNFI GIVNEHGHIQTYEKSNYKKFFQEKRSD >gi|284795524|gb|ADDQ01000025.1| GENE 7 6424 - 6495 66 23 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIKHSRKMYVIISSLILIFTIVG >gi|284795524|gb|ADDQ01000025.1| GENE 8 6930 - 7019 60 29 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFARLLRVVPVQTMRESIELFHKRVIFRK >gi|284795524|gb|ADDQ01000025.1| GENE 9 7068 - 7448 169 126 aa, chain + ## HITS:1 COG:no KEGG:EF_B0007 NR:ns ## KEGG: EF_B0007 # Name: not_defined # Def: pheromone-responsive regulatory protein R # Organism: E.faecalis # Pathway: not_defined # 1 126 1 126 126 229 96.0 3e-59 MIELKATDLNRITCQLTLFNRQRFKLYNGTTERIVYDFSGRNLLINPVSFETDQDMEHFF RQVKLIYFDGKVVGYRGCSELPLKLECRAFQKMVKRQKMLLNAPFNYKVFEENEFREWCE KMRSYK >gi|284795524|gb|ADDQ01000025.1| GENE 10 7448 - 7705 136 85 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|255973304|ref|ZP_05423890.1| ## NR: gi|255973304|ref|ZP_05423890.1| prgS protein [Enterococcus faecalis T1] # 1 85 1 85 85 169 100.0 4e-41 MNLFFYTWSFCLLVLTNMRNLPIARLAIEKGCRKAHGHEGANWLHVNFFAEFGRSLKKEY YRTYLVNQRVFKGLGKDKLPKVRSE >gi|284795524|gb|ADDQ01000025.1| GENE 11 8054 - 8323 146 89 aa, chain + ## HITS:1 COG:no KEGG:EF0145 NR:ns ## KEGG: EF0145 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 89 13 101 101 140 95.0 2e-32 MLALMNEDADWYRNEDTERFKRIQELAKKIETASTRQFSSHISKERFEAYQRMGLQFKEI AEEFHITTTALQQWRKDNGYPIYNKNNKK >gi|284795524|gb|ADDQ01000025.1| GENE 12 8334 - 11006 3405 890 aa, chain + ## HITS:1 COG:no KEGG:EFA0052 NR:ns ## KEGG: EFA0052 # Name: sea1 # Def: surface exclusion protein Sea1 # Organism: E.faecalis # Pathway: not_defined # 1 890 1 890 890 926 97.0 0 MKKFASAGLSILVATGVAGIGGNEVQAAEQAQPKTPENSSTEQPTVKATQTTEQAITEKQ QQVTEKQAIVDQKQQVADTAKKEKDTIDQSVKDQQAVVDQNKDALDQSQQAVTDQQAVVD EAKKVVDEATPSAIEKAKEQVATDTQAVDEQQKVVDQAQTDVNQQQAVVDEKAKETNAAK VQNEKDQQAVTAAKQEQAKLEELAKNAEAEKAKAEKEQAAKEAELANKQKEEAKAKDQKT KDDQAVADQQSVVTTSQEKVADAKADTAAKQADLTSKENALKDKQAATKQAQNTLDSSKE ELKGHKGLNLPANFTPDYYKKLTEQEKQAMEKEALALNKVFPENQADAAKVTEMINVKNP TEKQKQQMSDYVVGLINDVREKLGLQKLKISNQAMKFAWDVAKYDNPKEFDHDVNAINRA AKENGFKEFPGQNFYENLSMGRFTTQEGKVSMYDFEKAARNALVSMLMNDGHSGYSHLDS LLDANETNMAVSISGDLNDISAKIHIISYNQSKLVEANTYEEGTAPVFKSKETLQKEVAT NQEKLATAQQAESDAQQARSASQQALNTAKTTQATAEKELSVHKATLANLQAVATKSTTN YEEKVRQTATAETSLQQTKDQLATINELIHNRAAVLEKAKTNVAEAQAIEQTSAKVLKEK QEAQKAEENTLNSLKEVLDLAKENLNQKQIALKTSTRSLSRLENAQPTYEKALNELNKAE AAVVQAQEAYENSLKSLEELKEQQAVATLAYTQAQEDLSNAKLELQQYQGILRDLEAQQA EQRRQEALQDQVAKEQQRLEREAKQQQMLVASATSADKTPSLQQLSFSKQKEQPKAQTLT HSEPRKTKQVAKAQESLPHTGEQQSIWLTIFGLFMAVGAISFKNKRRKNS >gi|284795524|gb|ADDQ01000025.1| GENE 13 11603 - 11926 487 107 aa, chain + ## HITS:1 COG:no KEGG:EFA0048 NR:ns ## KEGG: EFA0048 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 107 1 108 111 149 74.0 4e-35 MKNYDPNIRWGLHTIKVSFQRWDYKGYVTFVKGGNCKGLDILELEVDDLYDKKFKENPIN FRLLGAGDDGEEWFAMTLKNNEDELFIEDEWKCLKDYILGIEIIDFK >gi|284795524|gb|ADDQ01000025.1| GENE 14 12242 - 14000 1835 586 aa, chain + ## HITS:1 COG:no KEGG:EF_B0011 NR:ns ## KEGG: EF_B0011 # Name: prgB # Def: aggregation substance PrgB # Organism: E.faecalis # Pathway: not_defined # 1 586 1 586 1305 930 90.0 0 MKQQTEVKKRFKTYKAKKRWVTAPILFIGVLGVVGLATDDVQAAELDTQPGTTTVQPDNP DPQVGSTTPKTAVTEEATVQKDTTSQPTKVEEVAPENKGTEQSSATPNDTTNVQQPTAEA EKSAQEQPVVSPETTNEPLGQPTEVAPAENEANKSTSIPKEFETPDVDKAVDEAKKDPNI TVVEKTAEDLGNVSSKDLAAKEKEVDQLQKEQAKKIAQQAAELKAKNEKIAKENAEIAAK NKAEKERYEKEVAEYNKHKNENGYVKEPVSKNLVFDQSVVTKDTKISSITGGKFIKAADF NKVNAGDSKDIFTKLRKDMAGKATGNFKNSFIKEVNLGSNGGYAVLLEKNKPVTVTYTGL NASYLGRKITKAEFVYELQSSSSKSGTLNAVFSNDPIITAFIGTSRANGKEIKTRLTIKF FDASGKEVLPDKASPFAYALSSLNSSLTNKGGHAEFVSDFGANNAFKYINGSYVKKQADG KFYSPEDIDYGTGPSKLKNSDWDAVGHKNAYFGSGVGLANGRISFSFGMTTKGKSNVPVS SAQWFAFSTNLNAKSITPYQEKGRFKQPEKATIEFNRYKANVVPVL Prediction of potential genes in microbial genomes Time: Sun May 15 12:31:01 2011 Seq name: gi|284795523|gb|ADDQ01000026.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont65.1, whole genome shotgun sequence Length of sequence - 2980 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 76 - 2979 1806 ## COG4644 Transposase and inactivated derivatives, TnpA family Predicted protein(s) >gi|284795523|gb|ADDQ01000026.1| GENE 1 76 - 2979 1806 967 aa, chain - ## HITS:1 COG:CAP0093 KEGG:ns NR:ns ## COG: CAP0093 COG4644 # Protein_GI_number: 15004797 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, TnpA family # Organism: Clostridium acetobutylicum # 312 951 1 654 673 545 43.0 1e-154 ILTTSQREQLLSVDHLSEEDFKAYFSFSDYDLEVINQHRGKVNKLGFAIQLCLARYPGCS LSNWPIKSTRLTSYVSRQLHLDAIDLNSYDHRNTRANHFNEILEVFNYHRFGSANTQKQL IEYLIELALENDDSIYLMKKTIDFLTRKRIIFPSIATLEDIISRCRDKAENNLFSILLCS LTDIQIEKLESLFQIYEETKITKLAWLKDIPGKANPESFMSICKKVEVIASMGLGTINVS HINRNRFLQLARLGENYDAYDFSRFELEKRYSLLIAFLVNHHQYLIDQLIEINDRILASI KRKGTRDSQEQLKEKGKLATKKLEHYASLIDALHFAKDNDSNPFDEIERIMPWEDLVQDG EEAKKITGNKNHGYLEMVRNKANYLRRYTPMLLRTLSFKATPAANPVLMALTQLTDLHNS GKRKIPADTSTDFVSKKWKSLVRPEEGKIDRSYYELVAFTELKNNIRSGDISVEGSMIHR NIDDYLVDLSACIDSETIPDTFEDYLKDREIILDLQLQFYSTVDKRISRANLKKLEKVTP SEAEIYRKKLYSIIPKIRLSDLLIEVDSWTNFSQEFSHDSTGKPPSEQERKIIFAALLGL GMNIGLEKMAQSTPGISYSQLANAKQWRFYKEALTRAQSVLVNYQLKLPVADFWGEGKTT ASDGMRVPVGVSALKSDVNPHYKSMEKGATMIRSINDRHTTHHIEVASTNTREATHTLDG LLYHETDLDIEEHFTDTNGYSDQVFGMTALLGFDFEPRIRNIKKSQLFSIKSPSYYPNLS EDISGKINVKIIEENYDEIKRIAYSIQTGKVSSSLLLGKLGSYARKNRVALALRELGRIE KSIFMIDYITDSELRRRITHGLNKTEAINALARELFFGRRGKFMERDIRRQLQSASALNV LINAISIWNAVYLQAAYNYLVKIDPEVTKYMKHVSPINWEHITFLGEYKFDLLSIPKHLR ELNIKNK Prediction of potential genes in microbial genomes Time: Sun May 15 12:32:32 2011 Seq name: gi|284795522|gb|ADDQ01000027.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont67.1, whole genome shotgun sequence Length of sequence - 277100 bp Number of predicted genes - 266, with homology - 257 Number of transcription units - 139, operones - 64 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 38 - 1084 991 ## COG1609 Transcriptional regulators - Prom 1113 - 1172 9.2 + Prom 1147 - 1206 9.7 2 2 Op 1 5/0.000 + CDS 1241 - 2530 1528 ## COG3538 Uncharacterized conserved protein 3 2 Op 2 . + CDS 2542 - 5232 2970 ## COG0383 Alpha-mannosidase + Term 5238 - 5285 11.2 + Prom 5257 - 5316 8.6 4 3 Op 1 . + CDS 5394 - 6572 1461 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase + Prom 6597 - 6656 9.3 5 3 Op 2 . + CDS 6683 - 7573 1251 ## COG0226 ABC-type phosphate transport system, periplasmic component + Term 7575 - 7632 14.1 - Term 7571 - 7609 5.4 6 4 Op 1 40/0.000 - CDS 7615 - 9390 1697 ## COG0642 Signal transduction histidine kinase 7 4 Op 2 . - CDS 9387 - 10097 791 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 10223 - 10282 3.1 8 5 Tu 1 . + CDS 10260 - 10724 514 ## COG1683 Uncharacterized conserved protein + Prom 10726 - 10785 4.3 9 6 Op 1 8/0.000 + CDS 10808 - 11146 467 ## COG2739 Uncharacterized protein conserved in bacteria 10 6 Op 2 . + CDS 11151 - 12569 2008 ## COG0541 Signal recognition particle GTPase + Term 12594 - 12663 19.1 - Term 12584 - 12642 18.0 11 7 Op 1 . - CDS 12644 - 13396 705 ## COG0789 Predicted transcriptional regulators - Prom 13450 - 13509 9.9 - Term 13451 - 13503 13.5 12 7 Op 2 . - CDS 13517 - 14071 725 ## COG0431 Predicted flavoprotein - Prom 14168 - 14227 10.5 + Prom 14056 - 14115 8.2 13 8 Tu 1 . + CDS 14213 - 15016 760 ## EF1695 acetyltransferase + Prom 15065 - 15124 4.0 14 9 Op 1 19/0.000 + CDS 15145 - 15438 493 ## PROTEIN SUPPORTED gi|227518885|ref|ZP_03948934.1| ribosomal protein S16 15 9 Op 2 . + CDS 15450 - 15695 381 ## COG1837 Predicted RNA-binding protein (contains KH domain) + Term 15706 - 15738 2.4 + Prom 15733 - 15792 6.6 16 10 Tu 1 . + CDS 15816 - 16382 624 ## EF1692 hypothetical protein + Term 16391 - 16431 5.1 + Prom 16511 - 16570 8.6 17 11 Op 1 4/0.057 + CDS 16597 - 17538 994 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III 18 11 Op 2 . + CDS 17539 - 18327 985 ## COG0300 Short-chain dehydrogenases of various substrate specificities 19 11 Op 3 3/0.114 + CDS 18344 - 18811 633 ## COG5416 Uncharacterized integral membrane protein + Term 18850 - 18897 7.4 + Prom 18831 - 18890 3.1 20 12 Op 1 7/0.000 + CDS 18966 - 21278 2179 ## COG0608 Single-stranded DNA-specific exonuclease 21 12 Op 2 . + CDS 21281 - 21793 799 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins + Term 21800 - 21857 15.6 - Term 21799 - 21835 8.2 22 13 Tu 1 . - CDS 21899 - 22096 286 ## EF1686 hypothetical protein - Prom 22134 - 22193 7.7 - Term 22237 - 22275 9.5 23 14 Tu 1 . - CDS 22290 - 22943 690 ## COG1272 Predicted membrane protein, hemolysin III homolog - Prom 23021 - 23080 4.8 + Prom 22947 - 23006 7.7 24 15 Tu 1 . + CDS 23075 - 23917 1102 ## COG1307 Uncharacterized protein conserved in bacteria + Term 23968 - 24008 4.4 25 16 Op 1 3/0.114 + CDS 24021 - 24920 931 ## COG2755 Lysophospholipase L1 and related esterases 26 16 Op 2 1/0.343 + CDS 24922 - 25566 651 ## COG4698 Uncharacterized protein conserved in bacteria 27 16 Op 3 2/0.171 + CDS 25583 - 26098 664 ## COG0225 Peptide methionine sulfoxide reductase 28 16 Op 4 1/0.343 + CDS 26104 - 26322 282 ## COG4479 Uncharacterized protein conserved in bacteria + Term 26328 - 26366 5.4 + Prom 26324 - 26383 4.5 29 17 Op 1 . + CDS 26419 - 27852 1801 ## COG0793 Periplasmic protease 30 17 Op 2 . + CDS 27870 - 28424 495 ## COG0681 Signal peptidase I + Term 28429 - 28480 11.2 + Prom 28466 - 28525 2.9 31 18 Tu 1 . + CDS 28545 - 28877 443 ## EF1677 putative lipoprotein + Term 28911 - 28960 14.2 + Prom 28933 - 28992 8.7 32 19 Op 1 8/0.000 + CDS 29026 - 29394 519 ## COG1725 Predicted transcriptional regulators 33 19 Op 2 . + CDS 29391 - 30245 808 ## COG1131 ABC-type multidrug transport system, ATPase component 34 19 Op 3 . + CDS 30247 - 30978 549 ## EF1674 hypothetical protein + Term 30984 - 31044 11.2 + Prom 31036 - 31095 3.4 35 20 Op 1 36/0.000 + CDS 31171 - 31851 288 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 36 20 Op 2 . + CDS 31852 - 33135 1382 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Prom 33160 - 33219 8.9 37 21 Tu 1 . + CDS 33253 - 34194 1148 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases + Term 34234 - 34279 14.1 - Term 34222 - 34266 13.1 38 22 Op 1 7/0.000 - CDS 34274 - 34876 617 ## COG0400 Predicted esterase 39 22 Op 2 3/0.114 - CDS 34889 - 35851 1232 ## COG0346 Lactoylglutathione lyase and related lyases 40 22 Op 3 5/0.000 - CDS 35862 - 36290 560 ## COG1846 Transcriptional regulators - Prom 36317 - 36376 9.6 - Term 36357 - 36405 13.3 41 23 Tu 1 . - CDS 36419 - 37213 913 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - Prom 37359 - 37418 4.3 + Prom 37383 - 37442 9.0 42 24 Op 1 . + CDS 37464 - 38162 608 ## EF1666 hypothetical protein + Prom 38182 - 38241 7.9 43 24 Op 2 . + CDS 38267 - 38989 655 ## EF1665 hypothetical protein + Term 39016 - 39055 10.0 - Term 39004 - 39043 10.0 44 25 Tu 1 . - CDS 39049 - 40083 916 ## COG1434 Uncharacterized conserved protein - Prom 40268 - 40327 8.5 45 26 Op 1 . + CDS 40199 - 40324 76 ## 46 26 Op 2 3/0.114 + CDS 40366 - 41187 818 ## COG0280 Phosphotransacetylase 47 26 Op 3 2/0.171 + CDS 41206 - 42288 1042 ## COG3426 Butyrate kinase 48 26 Op 4 5/0.000 + CDS 42294 - 43703 832 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 49 26 Op 5 28/0.000 + CDS 43720 - 44706 1271 ## COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit 50 26 Op 6 24/0.000 + CDS 44728 - 45714 1499 ## COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit 51 26 Op 7 . + CDS 45738 - 47036 1500 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes + Term 47067 - 47115 7.3 + Prom 47098 - 47157 3.8 52 27 Tu 1 . + CDS 47180 - 48232 1240 ## COG3641 Predicted membrane protein, putative toxin regulator 53 28 Tu 1 . - CDS 48241 - 49131 910 ## COG0583 Transcriptional regulator - Prom 49175 - 49234 10.2 + Prom 49155 - 49214 7.3 54 29 Tu 1 . + CDS 49308 - 50249 992 ## COG1893 Ketopantoate reductase + Term 50330 - 50375 2.1 + Prom 50262 - 50321 4.4 55 30 Op 1 8/0.000 + CDS 50525 - 51376 932 ## COG1161 Predicted GTPases 56 30 Op 2 2/0.171 + CDS 51378 - 52145 1201 ## COG0164 Ribonuclease HII 57 30 Op 3 . + CDS 52206 - 53069 761 ## COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake + Prom 53081 - 53140 2.1 58 30 Op 4 . + CDS 53160 - 53813 592 ## COG1266 Predicted metal-dependent membrane protease + Prom 53876 - 53935 5.0 59 31 Op 1 6/0.000 + CDS 53998 - 56076 2364 ## COG0550 Topoisomerase IA + Term 56085 - 56122 5.1 + Prom 56105 - 56164 4.8 60 31 Op 2 5/0.000 + CDS 56184 - 57491 1656 ## COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation + Term 57513 - 57564 4.1 + Prom 57547 - 57606 8.0 61 32 Op 1 4/0.057 + CDS 57703 - 58602 935 ## COG4974 Site-specific recombinase XerD 62 32 Op 2 24/0.000 + CDS 58631 - 59179 817 ## COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit 63 32 Op 3 4/0.057 + CDS 59194 - 60597 1348 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 64 32 Op 4 . + CDS 60618 - 61400 909 ## COG4465 Pleiotropic transcriptional repressor 65 32 Op 5 . + CDS 61434 - 62309 1019 ## COG2017 Galactose mutarotase and related enzymes + Term 62311 - 62361 16.3 - Term 62299 - 62349 16.3 66 33 Tu 1 . - CDS 62351 - 62980 793 ## COG0344 Predicted membrane protein - Prom 63124 - 63183 7.5 + Prom 63453 - 63512 3.7 67 34 Op 1 33/0.000 + CDS 63533 - 64492 1256 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component 68 34 Op 2 35/0.000 + CDS 64485 - 65492 1171 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 69 34 Op 3 . + CDS 65489 - 66256 220 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 70 35 Op 1 . + CDS 66386 - 66841 617 ## COG4917 Ethanolamine utilization protein 71 35 Op 2 . + CDS 66838 - 67419 784 ## COG2096 Uncharacterized conserved protein + Term 67581 - 67619 -0.7 + Prom 67739 - 67798 9.7 72 36 Tu 1 . + CDS 67906 - 69036 1038 ## COG1454 Alcohol dehydrogenase, class IV + Term 69115 - 69173 12.2 + Prom 69117 - 69176 6.7 73 37 Op 1 . + CDS 69196 - 69543 406 ## COG4810 Ethanolamine utilization protein 74 37 Op 2 3/0.114 + CDS 69571 - 70143 687 ## COG3707 Response regulator with putative antiterminator output domain 75 37 Op 3 2/0.171 + CDS 70144 - 71577 1234 ## COG3920 Signal transduction histidine kinase + Term 71588 - 71647 -0.7 76 37 Op 4 5/0.000 + CDS 71668 - 73092 1501 ## COG4819 Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition 77 37 Op 5 8/0.000 + CDS 73110 - 74474 1637 ## COG4303 Ethanolamine ammonia-lyase, large subunit 78 37 Op 6 6/0.000 + CDS 74492 - 75403 1253 ## COG4302 Ethanolamine ammonia-lyase, small subunit 79 37 Op 7 4/0.057 + CDS 75417 - 76070 999 ## COG4816 Ethanolamine utilization protein 80 37 Op 8 2/0.171 + CDS 76084 - 76602 776 ## COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein 81 37 Op 9 2/0.171 + CDS 76593 - 78071 1503 ## COG1012 NAD-dependent aldehyde dehydrogenases + Term 78109 - 78150 -0.5 + Prom 78114 - 78173 7.2 82 38 Op 1 . + CDS 78195 - 78485 545 ## COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein + Term 78495 - 78543 10.0 83 38 Op 2 . + CDS 78553 - 79116 412 ## EF1622 hypothetical protein 84 38 Op 3 . + CDS 79129 - 79755 747 ## COG4869 Propanediol utilization protein 85 38 Op 4 . + CDS 79770 - 80369 371 ## EF1620 hypothetical protein 86 38 Op 5 . + CDS 80382 - 80645 431 ## COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein 87 38 Op 6 2/0.171 + CDS 80658 - 81758 1735 ## COG3192 Ethanolamine utilization protein 88 38 Op 7 . + CDS 81771 - 82214 520 ## COG4766 Ethanolamine utilization protein + Prom 82220 - 82279 8.0 89 38 Op 8 2/0.171 + CDS 82302 - 82730 563 ## COG1832 Predicted CoA-binding protein + Prom 82752 - 82811 7.7 90 39 Op 1 24/0.000 + CDS 82935 - 84992 2556 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 91 39 Op 2 . + CDS 85005 - 87467 2654 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit + Term 87489 - 87534 14.6 + Prom 87645 - 87704 9.7 92 40 Op 1 11/0.000 + CDS 87757 - 90003 2461 ## COG1882 Pyruvate-formate lyase + Term 90030 - 90064 2.0 93 40 Op 2 2/0.171 + CDS 90080 - 90844 746 ## COG1180 Pyruvate-formate lyase-activating enzyme + Term 90849 - 90912 12.2 + Prom 90855 - 90914 7.5 94 41 Op 1 . + CDS 90940 - 91866 1298 ## COG1227 Inorganic pyrophosphatase/exopolyphosphatase 95 41 Op 2 . + CDS 91938 - 92399 369 ## EF1610 hypothetical protein 96 41 Op 3 . + CDS 92425 - 92823 379 ## EF1610 hypothetical protein + Term 92866 - 92916 11.5 97 42 Tu 1 . - CDS 92882 - 93433 630 ## COG4843 Uncharacterized protein conserved in bacteria - Prom 93468 - 93527 4.7 + Prom 93430 - 93489 6.8 98 43 Tu 1 . + CDS 93614 - 95074 1346 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes + Term 95084 - 95134 11.7 + Prom 95137 - 95196 9.5 99 44 Op 1 3/0.114 + CDS 95357 - 96526 1068 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 100 44 Op 2 8/0.000 + CDS 96510 - 97241 607 ## COG2190 Phosphotransferase system IIA components 101 44 Op 3 . + CDS 97241 - 98650 1430 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase + Term 98662 - 98703 2.1 + Prom 98673 - 98732 4.8 102 45 Tu 1 . + CDS 98760 - 98843 123 ## + Term 98959 - 98988 1.4 - Term 98947 - 98976 1.4 103 46 Op 1 5/0.000 - CDS 98981 - 99961 956 ## COG1609 Transcriptional regulators 104 46 Op 2 . - CDS 99980 - 101452 1255 ## COG1621 Beta-fructosidases (levanase/invertase) - Prom 101572 - 101631 10.5 + Prom 101566 - 101625 8.0 105 47 Op 1 9/0.000 + CDS 101683 - 103356 1560 ## COG0366 Glycosidases 106 47 Op 2 . + CDS 103373 - 105301 1905 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Term 105308 - 105354 11.3 - Term 105412 - 105455 10.1 107 48 Tu 1 . - CDS 105466 - 105528 118 ## - Prom 105551 - 105610 7.5 + Prom 105523 - 105582 5.1 108 49 Tu 1 . + CDS 105610 - 106455 862 ## EF1599 transcriptional regulator Cro/CI family protein + Term 106469 - 106512 8.6 + Prom 106503 - 106562 4.1 109 50 Tu 1 . + CDS 106588 - 108021 1200 ## COG0415 Deoxyribodipyrimidine photolyase - Term 108162 - 108218 6.0 110 51 Tu 1 . - CDS 108233 - 109669 1602 ## COG0753 Catalase - Prom 109694 - 109753 10.0 - Term 109888 - 109926 5.4 111 52 Tu 1 . - CDS 109972 - 110982 1248 ## EF1596 putative lipoprotein - Prom 111019 - 111078 8.2 - Term 111021 - 111062 5.2 112 53 Tu 1 1/0.343 - CDS 111122 - 111547 434 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - Prom 111575 - 111634 3.1 - Term 111582 - 111626 5.1 113 54 Op 1 35/0.000 - CDS 111636 - 113414 234 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 114 54 Op 2 . - CDS 113407 - 115155 225 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 - Prom 115249 - 115308 7.1 + Prom 115049 - 115108 8.5 115 55 Tu 1 . + CDS 115292 - 116110 830 ## COG2207 AraC-type DNA-binding domain-containing proteins 116 56 Op 1 1/0.343 - CDS 116165 - 116692 567 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 117 56 Op 2 . - CDS 116712 - 117182 314 ## COG0456 Acetyltransferases - Prom 117236 - 117295 5.7 + Prom 117115 - 117174 11.0 118 57 Tu 1 . + CDS 117389 - 117997 679 ## COG1051 ADP-ribose pyrophosphatase + Term 118004 - 118041 7.3 - Term 117992 - 118029 7.3 119 58 Tu 1 . - CDS 118048 - 119388 1808 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases - Prom 119504 - 119563 8.5 - Term 119584 - 119626 9.2 120 59 Op 1 . - CDS 119686 - 120129 550 ## COG0735 Fe2+/Zn2+ uptake regulation proteins - Prom 120155 - 120214 6.0 - Term 120207 - 120251 1.1 121 59 Op 2 . - CDS 120268 - 121200 1052 ## PROTEIN SUPPORTED gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 - Prom 121262 - 121321 10.2 - Term 121360 - 121403 10.3 122 60 Tu 1 . - CDS 121429 - 122289 1093 ## COG1705 Muramidase (flagellum-specific) - Prom 122481 - 122540 6.9 + Prom 122467 - 122526 8.0 123 61 Tu 1 . + CDS 122644 - 123834 1138 ## COG0477 Permeases of the major facilitator superfamily + Term 123845 - 123884 6.0 - Term 123824 - 123877 11.2 124 62 Op 1 4/0.057 - CDS 123886 - 125880 2599 ## COG0021 Transketolase 125 62 Op 2 . - CDS 125952 - 126194 420 ## COG4224 Uncharacterized protein conserved in bacteria - Prom 126217 - 126276 6.0 + Prom 126262 - 126321 6.2 126 63 Tu 1 . + CDS 126345 - 126965 787 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) + Term 126974 - 127011 2.4 - Term 126816 - 126851 -1.0 127 64 Op 1 . - CDS 126979 - 128148 1166 ## COG1600 Uncharacterized Fe-S protein 128 64 Op 2 16/0.000 - CDS 128172 - 128666 588 ## COG0262 Dihydrofolate reductase 129 64 Op 3 1/0.343 - CDS 128684 - 129631 1164 ## COG0207 Thymidylate synthase 130 64 Op 4 . - CDS 129649 - 131538 2213 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 131584 - 131643 8.9 + Prom 131390 - 131449 1.9 131 65 Tu 1 . + CDS 131502 - 131597 94 ## - Term 131590 - 131642 9.0 132 66 Op 1 . - CDS 131648 - 133702 2126 ## COG0025 NhaP-type Na+/H+ and K+/H+ antiporters 133 66 Op 2 . - CDS 133738 - 134004 306 ## EF1573 hypothetical protein - Prom 134032 - 134091 9.4 134 67 Op 1 . - CDS 134148 - 134624 462 ## EF1572 hypothetical protein 135 67 Op 2 . - CDS 134636 - 134830 250 ## EF1571 hypothetical protein - Prom 134906 - 134965 8.3 - Term 134969 - 135023 14.5 136 68 Op 1 . - CDS 135024 - 135872 972 ## COG1307 Uncharacterized protein conserved in bacteria 137 68 Op 2 1/0.343 - CDS 135948 - 137120 1114 ## COG1316 Transcriptional regulator - Prom 137154 - 137213 5.8 - Term 137198 - 137251 11.4 138 69 Op 1 2/0.171 - CDS 137264 - 138112 851 ## COG0077 Prephenate dehydratase 139 69 Op 2 5/0.000 - CDS 138120 - 138626 602 ## COG0703 Shikimate kinase 140 69 Op 3 6/0.000 - CDS 138646 - 139926 1528 ## COG0128 5-enolpyruvylshikimate-3-phosphate synthase 141 69 Op 4 1/0.343 - CDS 139939 - 141033 1024 ## COG0287 Prephenate dehydrogenase 142 69 Op 5 7/0.000 - CDS 141067 - 142233 1500 ## COG0082 Chorismate synthase 143 69 Op 6 3/0.114 - CDS 142235 - 143311 1324 ## COG0337 3-dehydroquinate synthetase 144 69 Op 7 . - CDS 143334 - 144359 1263 ## COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase 145 69 Op 8 . - CDS 144396 - 145262 796 ## COG0169 Shikimate 5-dehydrogenase - Prom 145298 - 145357 2.5 - Term 145697 - 145742 11.3 146 70 Op 1 . - CDS 145751 - 146206 594 ## EF1560 hypothetical protein - Prom 146234 - 146293 3.9 147 70 Op 2 . - CDS 146296 - 146670 449 ## COG5496 Predicted thioesterase 148 70 Op 3 1/0.343 - CDS 146670 - 147944 1290 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase 149 70 Op 4 3/0.114 - CDS 147887 - 148666 920 ## COG0289 Dihydrodipicolinate reductase 150 70 Op 5 . - CDS 148659 - 149009 451 ## COG1694 Predicted pyrophosphatase - Prom 149098 - 149157 8.6 + Prom 149054 - 149113 2.1 151 71 Tu 1 . + CDS 149133 - 150017 929 ## COG1284 Uncharacterized conserved protein + Term 150019 - 150065 12.3 - Term 150007 - 150053 12.3 152 72 Op 1 4/0.057 - CDS 150055 - 150594 658 ## COG5582 Uncharacterized conserved protein 153 72 Op 2 . - CDS 150604 - 151860 1660 ## COG0457 FOG: TPR repeat 154 72 Op 3 . - CDS 151870 - 152910 844 ## EF1552 hypothetical protein - Prom 153143 - 153202 6.4 - Term 153169 - 153204 7.1 155 73 Tu 1 . - CDS 153217 - 153492 179 ## PROTEIN SUPPORTED gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 - Prom 153645 - 153704 6.6 - Term 153564 - 153605 -0.1 156 74 Tu 1 . - CDS 153740 - 155050 1783 ## COG1160 Predicted GTPases - Prom 155077 - 155136 4.3 - Term 155147 - 155201 14.6 157 75 Op 1 21/0.000 - CDS 155224 - 156435 2025 ## PROTEIN SUPPORTED gi|29376111|ref|NP_815265.1| 30S ribosomal protein S1 - Prom 156484 - 156543 7.8 158 75 Op 2 . - CDS 156549 - 157229 771 ## COG0283 Cytidylate kinase - Prom 157273 - 157332 4.5 - Term 157336 - 157389 11.3 159 76 Op 1 . - CDS 157466 - 158095 743 ## EF1546 LysM domain-containing protein 160 76 Op 2 4/0.057 - CDS 158171 - 159607 1343 ## COG0514 Superfamily II DNA helicase 161 76 Op 3 . - CDS 159614 - 160648 650 ## COG4955 Uncharacterized protein conserved in bacteria - Prom 160841 - 160900 5.4 + Prom 160581 - 160640 6.8 162 77 Tu 1 . + CDS 160684 - 160902 190 ## COG1141 Ferredoxin + Term 161006 - 161045 -0.1 - Term 160874 - 160924 17.3 163 78 Op 1 . - CDS 160925 - 162331 1398 ## COG4640 Predicted membrane protein - Prom 162357 - 162416 6.3 - Term 162451 - 162507 11.3 164 78 Op 2 . - CDS 162512 - 163177 478 ## COG3601 Predicted membrane protein - Prom 163388 - 163447 5.1 - Term 163464 - 163507 7.1 165 79 Op 1 12/0.000 - CDS 163520 - 164236 1085 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 166 79 Op 2 21/0.000 - CDS 164240 - 164845 796 ## COG1386 Predicted transcriptional regulator containing the HTH domain 167 79 Op 3 . - CDS 164842 - 165627 966 ## COG1354 Uncharacterized conserved protein 168 79 Op 4 . - CDS 165701 - 166591 876 ## COG4974 Site-specific recombinase XerD - Prom 166619 - 166678 6.1 - Term 166671 - 166728 16.6 169 80 Op 1 . - CDS 166760 - 167689 1197 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 167716 - 167775 8.9 - Term 167805 - 167854 9.1 170 80 Op 2 . - CDS 167883 - 168974 1349 ## COG3589 Uncharacterized conserved protein - Prom 168994 - 169053 8.5 + Prom 168955 - 169014 6.9 171 81 Tu 1 . + CDS 169156 - 169905 798 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family + Term 169906 - 169962 15.2 - Term 169890 - 169951 21.0 172 82 Op 1 . - CDS 169985 - 170323 495 ## COG5294 Uncharacterized protein conserved in bacteria - Prom 170360 - 170419 4.7 173 82 Op 2 . - CDS 170466 - 171005 618 ## EF1531 TetR family transcriptional regulator - Prom 171081 - 171140 10.2 - Term 171160 - 171216 19.1 174 83 Op 1 . - CDS 171231 - 172529 1649 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 175 83 Op 2 . - CDS 172556 - 172858 326 ## EF1528 hypothetical protein - Prom 172894 - 172953 10.6 - Term 172949 - 172993 7.1 176 84 Tu 1 . - CDS 172997 - 174313 2008 ## COG0536 Predicted GTPase - Prom 174378 - 174437 4.5 + Prom 174473 - 174532 5.7 177 85 Tu 1 . + CDS 174601 - 175611 1141 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase + Term 175622 - 175676 14.3 - Term 175616 - 175656 8.2 178 86 Tu 1 . - CDS 175662 - 176111 510 ## COG0735 Fe2+/Zn2+ uptake regulation proteins - Prom 176166 - 176225 8.2 179 87 Tu 1 . - CDS 176227 - 177108 525 ## PROTEIN SUPPORTED gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains - Term 177120 - 177168 10.1 180 88 Tu 1 . - CDS 177182 - 179245 2249 ## EF1523 hypothetical protein - Prom 179277 - 179336 4.5 - Term 179341 - 179384 11.5 181 89 Op 1 31/0.000 - CDS 179397 - 180503 1495 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) - Prom 180532 - 180591 2.9 - Term 180559 - 180607 4.1 182 89 Op 2 . - CDS 180612 - 182498 1866 ## COG0358 DNA primase (bacterial type) - Prom 182600 - 182659 3.9 - Term 182650 - 182712 14.2 183 90 Tu 1 . - CDS 182815 - 185151 2429 ## COG0474 Cation transport ATPase - Prom 185190 - 185249 5.0 - Term 185210 - 185277 17.4 184 91 Tu 1 . - CDS 185280 - 185864 752 ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) - Prom 185961 - 186020 6.2 - Term 186093 - 186140 5.2 185 92 Tu 1 1/0.343 - CDS 186188 - 186877 553 ## COG0036 Pentose-5-phosphate-3-epimerase 186 93 Op 1 7/0.000 - CDS 187015 - 188115 1462 ## COG1299 Phosphotransferase system, fructose-specific IIC component - Prom 188157 - 188216 5.0 - Term 188157 - 188205 0.1 187 93 Op 2 8/0.000 - CDS 188225 - 188674 465 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 188 93 Op 3 . - CDS 188694 - 189011 495 ## COG1445 Phosphotransferase system fructose-specific component IIB 189 93 Op 4 . - CDS 189011 - 189463 526 ## LGG_00394 PTS system transporter subunit IIA 190 93 Op 5 7/0.000 - CDS 189453 - 190934 832 ## COG3711 Transcriptional antiterminator - Prom 191032 - 191091 5.5 - Term 191125 - 191172 7.4 191 94 Op 1 7/0.000 - CDS 191175 - 193172 2494 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 192 94 Op 2 . - CDS 193209 - 194042 853 ## COG3711 Transcriptional antiterminator - Prom 194215 - 194274 10.5 - Term 194528 - 194556 -0.9 193 95 Op 1 . - CDS 194747 - 195949 950 ## COG0303 Molybdopterin biosynthesis enzyme 194 95 Op 2 2/0.171 - CDS 195967 - 198687 2946 ## COG3383 Uncharacterized anaerobic dehydrogenase 195 95 Op 3 23/0.000 - CDS 198690 - 199988 1037 ## COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit 196 95 Op 4 . - CDS 200000 - 200488 707 ## COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit 197 95 Op 5 . - CDS 200476 - 201057 481 ## EF1387 hypothetical protein 198 95 Op 6 . - CDS 201047 - 201871 756 ## COG2116 Formate/nitrite family of transporters 199 95 Op 7 . - CDS 201890 - 202402 471 ## COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A - Prom 202514 - 202573 10.3 - Term 202554 - 202598 13.4 200 96 Op 1 . - CDS 202603 - 203631 837 ## COG0392 Predicted integral membrane protein 201 96 Op 2 . - CDS 203651 - 203917 240 ## COG3326 Predicted membrane protein - Prom 203942 - 204001 8.2 + Prom 203798 - 203857 4.2 202 97 Tu 1 . + CDS 203996 - 204091 62 ## - Term 203992 - 204052 1.8 203 98 Op 1 . - CDS 204063 - 205292 1862 ## COG2195 Di- and tripeptidases 204 98 Op 2 9/0.000 - CDS 205322 - 206440 1246 ## COG0327 Uncharacterized conserved protein 205 98 Op 3 . - CDS 206424 - 207140 850 ## COG2384 Predicted SAM-dependent methyltransferase - Prom 207226 - 207285 5.2 - Term 207235 - 207282 8.5 206 99 Tu 1 . - CDS 207343 - 209985 3462 ## COG0013 Alanyl-tRNA synthetase - Term 210239 - 210290 3.0 207 100 Tu 1 . - CDS 210331 - 211014 602 ## EF1378 transcriptional regulator, putative - Prom 211175 - 211234 10.6 - Term 211491 - 211539 13.4 208 101 Op 1 . - CDS 211561 - 212910 1471 ## COG0513 Superfamily II DNA and RNA helicases 209 101 Op 2 . - CDS 212973 - 214154 893 ## COG4767 Glycopeptide antibiotics resistance protein - Prom 214216 - 214275 7.9 + Prom 214097 - 214156 8.0 210 102 Tu 1 . + CDS 214297 - 214608 355 ## EF1375 hypothetical protein + Term 214609 - 214658 11.9 - Term 214594 - 214646 13.3 211 103 Tu 1 . - CDS 214669 - 215007 392 ## COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism - Prom 215035 - 215094 7.6 212 104 Op 1 3/0.114 - CDS 215121 - 216074 926 ## PROTEIN SUPPORTED gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B 213 104 Op 2 1/0.343 - CDS 216088 - 217407 1329 ## COG4109 Predicted transcriptional regulator containing CBS domains 214 104 Op 3 1/0.343 - CDS 217417 - 218091 776 ## COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold - Prom 218183 - 218242 4.0 - Term 218235 - 218288 16.2 215 105 Tu 1 . - CDS 218296 - 219729 1396 ## COG0477 Permeases of the major facilitator superfamily - Prom 219873 - 219932 5.4 + Prom 219837 - 219896 6.2 216 106 Tu 1 . + CDS 219921 - 220271 377 ## COG1396 Predicted transcriptional regulators + Prom 220422 - 220481 6.9 217 107 Tu 1 . + CDS 220610 - 221731 1095 ## EF1368 hypothetical protein + Term 221745 - 221789 9.1 + Prom 221937 - 221996 5.1 218 108 Tu 1 . + CDS 222029 - 222229 298 ## COG1278 Cold shock proteins + Term 222252 - 222283 2.1 + Prom 222259 - 222318 8.3 219 109 Op 1 . + CDS 222385 - 223590 1275 ## COG1434 Uncharacterized conserved protein 220 109 Op 2 . + CDS 223607 - 224659 843 ## COG0628 Predicted permease - Term 224634 - 224671 7.3 221 110 Tu 1 . - CDS 224679 - 227090 2706 ## COG1257 Hydroxymethylglutaryl-CoA reductase - Prom 227250 - 227309 6.8 + Prom 227135 - 227194 6.6 222 111 Tu 1 . + CDS 227276 - 228427 1320 ## COG3425 3-hydroxy-3-methylglutaryl CoA synthase + Term 228459 - 228509 15.0 - Term 228447 - 228496 15.6 223 112 Tu 1 . - CDS 228500 - 229267 889 ## EF1362 hypothetical protein - Prom 229307 - 229366 10.8 - Term 229345 - 229392 9.6 224 113 Op 1 10/0.000 - CDS 229406 - 230008 855 ## COG2376 Dihydroxyacetone kinase 225 113 Op 2 9/0.000 - CDS 230021 - 231004 1395 ## COG2376 Dihydroxyacetone kinase 226 113 Op 3 . - CDS 231005 - 231403 563 ## COG3412 Uncharacterized protein conserved in bacteria 227 113 Op 4 . - CDS 231416 - 232555 1402 ## COG0371 Glycerol dehydrogenase and related enzymes - Prom 232642 - 232701 9.9 + Prom 232606 - 232665 6.2 228 114 Tu 1 . + CDS 232717 - 233703 865 ## COG4936 Predicted sensor domain + Term 233710 - 233743 2.3 - Term 233686 - 233744 17.0 229 115 Op 1 30/0.000 - CDS 233818 - 235224 787 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 230 115 Op 2 24/0.000 - CDS 235232 - 236851 2127 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes 231 115 Op 3 28/0.000 - CDS 236994 - 237971 1290 ## COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit 232 115 Op 4 . - CDS 237974 - 239089 1533 ## COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit - Prom 239179 - 239238 6.0 - Term 239598 - 239641 -0.5 233 116 Tu 1 . - CDS 239688 - 242297 2733 ## COG0474 Cation transport ATPase 234 117 Tu 1 . - CDS 242773 - 243354 711 ## COG3548 Predicted integral membrane protein - Prom 243388 - 243447 10.7 - Term 243455 - 243506 6.6 235 118 Op 1 7/0.000 - CDS 243524 - 245137 1588 ## COG0366 Glycosidases 236 118 Op 2 7/0.000 - CDS 245139 - 246764 1657 ## COG0366 Glycosidases 237 118 Op 3 . - CDS 246792 - 248558 1906 ## COG0366 Glycosidases 238 118 Op 4 . - CDS 248559 - 248633 88 ## - Prom 248659 - 248718 7.6 + Prom 248614 - 248673 13.2 239 119 Op 1 19/0.000 + CDS 248818 - 250068 1551 ## COG2182 Maltose-binding periplasmic proteins/domains + Term 250079 - 250126 7.0 + Prom 250070 - 250129 5.5 240 119 Op 2 20/0.000 + CDS 250154 - 251497 1061 ## COG1175 ABC-type sugar transport systems, permease components 241 119 Op 3 . + CDS 251501 - 252364 655 ## COG3833 ABC-type maltose transport systems, permease component + Term 252371 - 252410 8.1 - Term 252359 - 252397 5.4 242 120 Tu 1 . - CDS 252402 - 252890 538 ## EF1342 MarR family transcriptional regulator - Prom 253057 - 253116 8.6 243 121 Tu 1 . + CDS 253036 - 255375 2431 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component + Term 255377 - 255439 15.2 244 122 Tu 1 . - CDS 255412 - 255495 86 ## - Prom 255538 - 255597 7.2 + Prom 255400 - 255459 9.8 245 123 Op 1 . + CDS 255494 - 255994 583 ## EF1340 pheromone cAM373 precursor lipoprotein + Prom 256106 - 256165 8.3 246 123 Op 2 . + CDS 256191 - 256652 645 ## EF1339 hypothetical protein + Term 256658 - 256701 6.5 - Term 256646 - 256689 10.3 247 124 Tu 1 . - CDS 256695 - 257609 632 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 - Prom 257713 - 257772 6.3 248 125 Tu 1 . - CDS 257778 - 258209 342 ## EF1337 hypothetical protein 249 126 Tu 1 . - CDS 258856 - 258924 135 ## - Prom 258967 - 259026 3.5 250 127 Tu 1 . - CDS 259028 - 259735 983 ## COG2188 Transcriptional regulators - Prom 259763 - 259822 7.3 - Term 259866 - 259915 6.1 251 128 Tu 1 . - CDS 259941 - 264188 3776 ## COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) - Prom 264256 - 264315 8.3 252 129 Tu 1 . + CDS 264367 - 264975 493 ## COG1309 Transcriptional regulator + Term 264979 - 265027 10.0 - Term 264963 - 265017 9.3 253 130 Tu 1 . - CDS 265031 - 265210 230 ## EF1325 hypothetical protein - Prom 265235 - 265294 3.9 - TRNA 265365 - 265436 67.6 # Gln TTG 0 0 + Prom 265269 - 265328 8.1 254 131 Tu 1 . + CDS 265445 - 265555 123 ## - TRNA 265446 - 265526 72.8 # Tyr GTA 0 0 - Term 265555 - 265611 7.1 255 132 Tu 1 . - CDS 265623 - 265856 365 ## EF1324 hypothetical protein - Term 265949 - 265988 6.0 256 133 Op 1 . - CDS 266003 - 267472 2231 ## COG2268 Uncharacterized protein conserved in bacteria 257 133 Op 2 . - CDS 267489 - 268013 600 ## EF1322 hypothetical protein - Prom 268044 - 268103 7.0 258 134 Op 1 36/0.000 - CDS 268206 - 270842 2583 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 259 134 Op 2 . - CDS 270852 - 271553 343 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 271683 - 271742 5.7 + Prom 271602 - 271661 6.0 260 135 Op 1 . + CDS 271714 - 272373 653 ## EF1319 hypothetical protein 261 135 Op 2 . + CDS 272387 - 272773 582 ## EF1318 hypothetical protein + Term 272779 - 272814 5.0 - Term 272762 - 272808 7.8 262 136 Op 1 . - CDS 272816 - 273964 1570 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase - Prom 273991 - 274050 3.1 263 136 Op 2 . - CDS 274065 - 274892 918 ## EF1316 Cro/CI family transcriptional regulator - Prom 275058 - 275117 6.5 + Prom 274899 - 274958 3.9 264 137 Tu 1 . + CDS 275070 - 275246 315 ## EF1315 hypothetical protein + Term 275264 - 275321 19.5 - Term 275252 - 275309 17.0 265 138 Tu 1 . - CDS 275312 - 276529 1050 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase - Prom 276584 - 276643 9.6 - TRNA 276772 - 276858 56.4 # Leu GAG 0 0 - Term 276879 - 276921 9.6 266 139 Tu 1 . - CDS 276927 - 277100 86 ## EF1313 hypothetical protein Predicted protein(s) >gi|284795522|gb|ADDQ01000027.1| GENE 1 38 - 1084 991 348 aa, chain - ## HITS:1 COG:L0146 KEGG:ns NR:ns ## COG: L0146 COG1609 # Protein_GI_number: 15673482 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 1 342 1 340 345 298 45.0 1e-80 MKQPLYQQIIDYLQNEIDSGRLPVGAQVPTEKELSAQFNVSRITSKRALTELETQGVIQR HQGKGSFVQAPKHPLHTSLNKVLFLLPFADDLSVGNFYSGLAPTIQAAGLEVFMTSPNFL REKNAADIVNEFAGLVYYAATSNDYLDLLFELALMNFPVVVLDKKIHDLPFATIQSDNFA GGKTATERLIGLGHTKIGYILSGSPALQSVRQRYLGYLQALKEANLAFHTAITETNLLDE HNFKQYFEAHQLTAVVCDNDFSALHCLRNCKNLGIHVPEELSIIGFDDIQAAAFVEPPLT TMAQDFKEMGKLAGEVLLQTMQQDLQIIEDIQVPVTLIERETISTVSK >gi|284795522|gb|ADDQ01000027.1| GENE 2 1241 - 2530 1528 429 aa, chain + ## HITS:1 COG:L133416 KEGG:ns NR:ns ## COG: L133416 COG3538 # Protein_GI_number: 15673481 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 6 429 5 431 431 649 71.0 0 MVYTEVPKSVATFMETITEKCGEAHQDWAKNFQAAFANTLLTTVKRQEDGTTFLLTGDIP AMWLRDSTAQVRPYLVIAKEDEDLAQMIAGLVKRQFRYICIDPYANAFNETDNHAGHQTD KTEMNGWIWERKYEIDSLCYPVQLAYLLYKNTGMTEQFNSDFVEGVKKILNVFTTEQDHA QSPYLFERDTWRQEDTLVEAGKGTPVGKTGMTWSGFRPSDDACQYGYLVPSNMFAVVILG YIQEIFSDVLEDATIGAIAKKLQEEIEEGIQTFGRTKNQNNETIYAYEVDGLGNASVMDD SNVPNLVAAPYLGYCSTEDEQYLTTRQTLLSKENPYFYEGKYAKGIGSSHTPENYVWPIA LAMEGMTTKDKAEKERILDLLVATDAGTHLMHEGFDVDNPENYTREWFSWANMMFCELVM DYFDIRVEK >gi|284795522|gb|ADDQ01000027.1| GENE 3 2542 - 5232 2970 896 aa, chain + ## HITS:1 COG:L130682 KEGG:ns NR:ns ## COG: L130682 COG0383 # Protein_GI_number: 15673480 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-mannosidase # Organism: Lactococcus lactis # 1 891 1 891 899 1083 60.0 0 MTKKKVYIVSHSHWDREWYLPYEEHHMRLIELVDNVLDLIENDPEFNSFHLDGQTIILDD YLQVRPEKKEAVKKAVQAGKLKIGPFYILQDDFLISSESNVRNMLIGHLESQKWGAPVQL GYFPDTFGNMGQTPQMMQLANLPAAAFGRGVKPIGFDNQVLESDYSSQYSEMWWEGPDQT KIFGLLFANWYSNGNEIPSEKEAAIAFWKQKLADVERYASTNHLLMMNGVDHQPVQRDIT KAIALANELFPEYEFIHSNFDDYLKAVQEELPEDLGTVTGELTSQETDGWYTLANTSSAR VYLKQWNTKVQRQLENIAEPLAAMAYEVTGDYPHDQFDYAWKTLLQNHPHDSICGCSVDE VHRGMMTRFENANDVGHFLADEATRQLTEAIDTSVFPEKAHPFVLFNTSGYQKTEVVTVE VEIERLPFYTGKPEDLYHELKQKATPDYQVIDPTGKAVASRIVKEDVRFGYDLPKDAFRQ PYMAKYLTVELSVKEMAPFSWDSFALIQGETKAFEGSLLAQPATNEMENEFIQVKIENNG SLTIADKKTGETFSKLLTFEDTGDIGNEYIFFKPTEDQGITTENVTAEITNKENSPVKAS YQIKQTVMLPVAADERLEEEQKAVREFRERLAQRSTTLRPFEITTMVTMIKESNQLFFET TINNQIKDHRLRVLFPTGMVTETHEADSIYEVVTRPNQVSDTWENPTNPQHQQAFVNVHD QNKGVTIFNEGLNEYEVLADGTIAVTLIRCVGELGDWGYFATPEAQCQGEYTFKYGLSLH GKPEERFATYQQAYSAQIPFTAATTARHEGKLAPNHVYLTTAEGPIGWTAVKRQEQTNHL VVRGFNLTAQNIPCELHKETQPATCLTNVLEEPLTPAIEVDAPLRPFEIRTWRFEK >gi|284795522|gb|ADDQ01000027.1| GENE 4 5394 - 6572 1461 392 aa, chain + ## HITS:1 COG:SP0035 KEGG:ns NR:ns ## COG: SP0035 COG0436 # Protein_GI_number: 15899981 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 385 1 386 389 514 66.0 1e-145 MDLTNRFNRQVNKIAVSLIRQFDEQVSGIEGILKLTLGEPDFNTPEHVKKAAKEAIDANF SHYTGMSGLLDVREAAAYFMKEKYHLTYQPATEILVTVGATEAISASLLAILEQGDKVLL PAPIYPGYEPIITLAGAEPVYLDTRDNDFVLTPEMIEAAMAEHGEQVKAIILNYPSNPTG VTYNRQELQAIADVLKKYDIFVISDEIYSELTYDESHVSIAEMLRDQTILINGLSKSHAM TGWRIGFIFAPAILTAEIIKVHQYLVTAAATVSQKAAVRALIEGMHDAEIMKEEYRKRRD FVYEQMTQLGFEVARPNGAFYIFAKIPTGYEQDSMKFCIDLAQKEAVALIPGISFGPEAE GYVRISYASDMDKLTTAMERIAHYMATQRVTH >gi|284795522|gb|ADDQ01000027.1| GENE 5 6683 - 7573 1251 296 aa, chain + ## HITS:1 COG:lin2642 KEGG:ns NR:ns ## COG: lin2642 COG0226 # Protein_GI_number: 16801704 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Listeria innocua # 1 295 1 300 302 360 65.0 2e-99 MKKRVIAATMLSLGLLLTGCGAQGGTTEKSSEADSNKPVKIVAVGSTALQPLVDAAKDQF TQEHPNYTVSVQGGGSGTGLSQVADGAVTIGNSDVFAEEKDGVDASKLVDHRVAVVGMGP VVNKEVGVKNLTKQQLIDVFTGKVKNWKEVGGKDQEIVVINRANGSGTRATFEKWGLDGA KPVQSQEQDSSGTVRKIVEQTPGAISYLAFSYMDDSTVALSIDGVEPKEEHVKDNSWKIW SYEHMYTKGEPNKEVKAFLDYMVTDDVQKTIVKDLGYLAITDMQVERDVNGKVTEK >gi|284795522|gb|ADDQ01000027.1| GENE 6 7615 - 9390 1697 591 aa, chain - ## HITS:1 COG:lin2643 KEGG:ns NR:ns ## COG: lin2643 COG0642 # Protein_GI_number: 16801705 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 10 585 16 588 591 256 30.0 8e-68 MKKRLRIEYFLVAAVMLLLFVGSIAATNFFFQKEMVAQQETYLRRKNTLLTDQLPPSVFE KGQLTNQQQLLVTHALDDAEERVTLLQKNGTVFFDSSQNEPLESHKKRPEIAAVLSGATY GSALRKSKTLNKELLYVATPVLKSGEIVGIIRISEQTALFSKNIQSFRRYIIFTFGILFL LITLFIFLLLRQKNQPLVTVLPILKRMLKHPDENRSIIQQSSEWNELYETINLLSQQVSQ TYKAYTSADEQFHELLDELMIGVFIIDTQGRLRLLNPKMQEMLGLSAKNMQSNYLEVIQD ADLIHLIHQVVAEKNSLHQEITVTQGPTPLRLDLSLRYLDDQSANDYQVLGIAYDLTRVR QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPEVLNQFLHIMQKDAQRLQQLI QEILELSRGSATIPYAEQEITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKDQERIFERFYRVD KARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLPLTKKEA >gi|284795522|gb|ADDQ01000027.1| GENE 7 9387 - 10097 791 236 aa, chain - ## HITS:1 COG:BH3157 KEGG:ns NR:ns ## COG: BH3157 COG0745 # Protein_GI_number: 15615719 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus halodurans # 2 235 3 236 239 270 54.0 2e-72 MKKVLVVDDEPSILTLLTFNLEKEGYQVTTSEDGKNGFELALSNQYDFIILDVMLPGMDG LEITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRRL KPTTTETLQEDTPKAPLVIGEIRVDEQNYEVFVRNQPIELTPKEFELLVYFMKRKDRVIN RETLLERIWQYDFAGQSRIVDVHISHLRDKIEPDPKRPVYLVTVRGFGYRFQEPKR >gi|284795522|gb|ADDQ01000027.1| GENE 8 10260 - 10724 514 154 aa, chain + ## HITS:1 COG:lin2433 KEGG:ns NR:ns ## COG: lin2433 COG1683 # Protein_GI_number: 16801495 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 146 1 146 147 159 57.0 2e-39 MIGISSCLGGICCRYDGKSQEQEALKQLVTNGKAIMICPEVLGELPIPRPPAEIIGGDGF DVWANTAYVYTDNGEDVTETFKAGAQRAYQKLKALQITTLILKEKSPSCGSQLIYDGQFS GIKKAGVGVATAYFIQQGMTVYSEETWQLADISF >gi|284795522|gb|ADDQ01000027.1| GENE 9 10808 - 11146 467 112 aa, chain + ## HITS:1 COG:SP1288 KEGG:ns NR:ns ## COG: SP1288 COG2739 # Protein_GI_number: 15901148 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 111 1 107 110 108 66.0 2e-24 MEMEKTNRMNALFEFYSTLLTEKQMNYMELYYADDFSLGEIAEEYEVSRQAVYDNIKRTE KILEEYEKKLHLYSNYVVRKEFLEQLQQYVQETYPKDSEIKKYIEQIQEIEE >gi|284795522|gb|ADDQ01000027.1| GENE 10 11151 - 12569 2008 472 aa, chain + ## HITS:1 COG:SP1287 KEGG:ns NR:ns ## COG: SP1287 COG0541 # Protein_GI_number: 15901147 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Streptococcus pneumoniae TIGR4 # 1 463 1 510 523 590 64.0 1e-168 MAFESLTNRLQQAMSKIRRKGKVSEADVKEMMREIRLALLEADVNLQVVKDFTKRVRERA VGVEVLESLSPAQQIVKIVDEELTKTLGSETVELNKSPKIPTVIMMTGLQGAGKTTFTGK LAKHLMKTENARPLLIAGDVYRPAAIDQLKVLGQQLEVPVFDMGTDANPVEIVRQGLALA KEKKNDYVLIDTAGRLHIDEALMDELKQIKELADPNEILLVVDAMTGQDAVNVADSFNEQ LGITGVVITKMDGDTRGGAALSIRAVTGAPIKFVGSGEKLTDLEIFHPDRMSSRILGMGD MLTLIEKAQQDYDEKKAEELAQKMKENSFDFNDFIEQLDQVMGMGPIEDLLKMIPGMSNM PGIENVKVDPKDVARKRAMVLSMTPAERENPDLLNPSRRRRIAAGSGNSVVEVNRMIKQF KESKKMMQQMSKGDMNIPGMDQMLGGGVKGKLGKMAMNRMMKKNKKKKKKKR >gi|284795522|gb|ADDQ01000027.1| GENE 11 12644 - 13396 705 250 aa, chain - ## HITS:1 COG:BH0408 KEGG:ns NR:ns ## COG: BH0408 COG0789 # Protein_GI_number: 15612971 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 1 239 1 234 255 154 40.0 1e-37 MEYTIKKMASLSGVSARTLRYYDEIGLLQPARINSSGYRIYGQAEVNRLQQILFYRELDL KLDEIKEILEQPDFNVEQALYEHQQKLLEKRNEIDRLLASVQQTLHHYKGEINMSDQQKF EAFKQQKVQENEEKYGKEIREKYGNETIEQANKKYLNLTEKDMQAMQNVEKDLFSKLAMY QKSPKLTSQLAQEIFQLHKDWLMYSWSSYSPEAHKGLGLMYVGDERFTSYYEQHGAGFAE ALNAIIQNYA >gi|284795522|gb|ADDQ01000027.1| GENE 12 13517 - 14071 725 184 aa, chain - ## HITS:1 COG:NMB1796 KEGG:ns NR:ns ## COG: NMB1796 COG0431 # Protein_GI_number: 15677635 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Neisseria meningitidis MC58 # 1 181 3 187 190 157 42.0 2e-38 MTKKIGIFVGSLRKDSFNKLVAKTMADLFPADFEPVFINIGDLELYNQDLDDEGTPTEAW TTFREEVKQVDGVMFVTPEYNRSVPAVLKNALDVGSRPYGESVWDKKPGLVVSVSPGAIS GFGANHHLRQSLVFLNVPTLQQPEAYIGGITNLIGEDGKIIDGTVGFLQSIVDAYVDFFN RLTA >gi|284795522|gb|ADDQ01000027.1| GENE 13 14213 - 15016 760 267 aa, chain + ## HITS:1 COG:no KEGG:EF1695 NR:ns ## KEGG: EF1695 # Name: not_defined # Def: acetyltransferase # Organism: E.faecalis # Pathway: not_defined # 27 267 1 241 241 443 100.0 1e-123 MNKKINWRRQLTQLEKQTLTELKNKEMIKQGTFYKLEQTFPEESAYTYYGLYRKEQTIQA YIVGYCFDGETLEATIVAPNVGPFFEELVQELEKQAALWGMKEVFLVMDDKQSVGLNYFN RQGIVPAFSEQYLVFQRETYSQALAKLTLLRPQVADLDSLARLLEGTPLPEDLQRTLIYK ENNQLLATLRLDHFENEWGIYGFVVTKTQRGRGLGRQVLQSALRMILENSASATIFLEVE TENQAALHLYQTEGFQVRNQYNYYQIL >gi|284795522|gb|ADDQ01000027.1| GENE 14 15145 - 15438 493 97 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227518885|ref|ZP_03948934.1| ribosomal protein S16 [Enterococcus faecalis TX0104] # 1 97 1 97 97 194 100 3e-48 MEVYLIMAVKIRLKRMGSKKSPFYRIVVADSRSPRDGRFIETVGTYNPLKDPAEVVLKED LVLDWLSKGAQPSDTVRNILSKEGVMKKHHEAKNVKK >gi|284795522|gb|ADDQ01000027.1| GENE 15 15450 - 15695 381 81 aa, chain + ## HITS:1 COG:L9737 KEGG:ns NR:ns ## COG: L9737 COG1837 # Protein_GI_number: 15673550 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein (contains KH domain) # Organism: Lactococcus lactis # 3 75 4 75 79 83 65.0 8e-17 MADVKELILTIVRPLVSQPEAVSLEIEESTDFLEYNLTVAKEDIGRIIGKQGRVAKAIRT IVYSVRIDGPKKVRLNILDGK >gi|284795522|gb|ADDQ01000027.1| GENE 16 15816 - 16382 624 188 aa, chain + ## HITS:1 COG:no KEGG:EF1692 NR:ns ## KEGG: EF1692 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 188 1 188 188 330 100.0 2e-89 MAKRIIIMNFDIESKSYQAFSEIKKMQAERQLKGEQMAVVTHVNDGQHQFKINDFIDFTG NNHTSKDSMIGMLVGILGGPLGILFGWFAGSMYGASKDAKEIQEAQTVFEHVIQKIDEGQ TGLLLIAEEEDNRPLNQLVMFDLGGEITRLDLEEVQQEINDANEVANEAKQSWQAKKEQH KEATSKEE >gi|284795522|gb|ADDQ01000027.1| GENE 17 16597 - 17538 994 313 aa, chain + ## HITS:1 COG:L18686 KEGG:ns NR:ns ## COG: L18686 COG1234 # Protein_GI_number: 15672612 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Lactococcus lactis # 1 299 1 300 307 343 58.0 3e-94 MEIQFLGTGAGVPAKHRNVTGIALKLLDERNAVWLFDCGEGTQLQILKSSIRPRKIEKIF ITHLHGDHIFGLPGLLSSRSFQGGTEPLEIYGPVGIADFVKTSLRVSQSRLSYPLKFIEL TKENDVIFKDKQFTVRCNILDHGITSFGYRIEEAAHEGELQVEKLQALGIPSGPLYGKLK RGETIVFDGQEINGQAFVGERKPGRIVTILGDTRKTKNSVTLARRADVLVHESTFNKHEA KMAKAYFHSTSQQAAEVAKEAQVKQLILTHISARYLTKEAYQLQEEAQEIFPNTKIVKDM DIIEIPFANEGGA >gi|284795522|gb|ADDQ01000027.1| GENE 18 17539 - 18327 985 262 aa, chain + ## HITS:1 COG:SP0675 KEGG:ns NR:ns ## COG: SP0675 COG0300 # Protein_GI_number: 15900576 # Func_class: R General function prediction only # Function: Short-chain dehydrogenases of various substrate specificities # Organism: Streptococcus pneumoniae TIGR4 # 8 262 4 251 251 233 45.0 2e-61 MDLTNKVVVVTGGSAGLGEQICYEAAKQGAVVVVCARRINLIGKVREQCAVLSGREAFSY QLDIADPESVERVVEAISAEVGPIDVLVNNAGFGLFENFVEIDLAVARQMFDVNVLGMMT FTQKVAIKMIEAGQGHIINVASMAGKMATAKSTVYSATKFAVLGFSNALRLELKPLGVAV TTVNPGPIQTEFFDKADPTGTYLAAVDKIVLDPTKLAKEVVGSMGTSRREINRPFVMEAA ARFYTLFPHLGDFIAGNILNKK >gi|284795522|gb|ADDQ01000027.1| GENE 19 18344 - 18811 633 155 aa, chain + ## HITS:1 COG:BS_yrvD KEGG:ns NR:ns ## COG: BS_yrvD COG5416 # Protein_GI_number: 16079817 # Func_class: S Function unknown # Function: Uncharacterized integral membrane protein # Organism: Bacillus subtilis # 1 77 1 77 107 62 40.0 3e-10 MKNQWRVILGLVLVLIVVIFAVLNNQAVPVNFGFTKISGPLILIILGSAIIGALVGLLTS TTTIWNQRKELKAVQKELDIYKNDMDKLVKEETEKVQRSFDNQLADLQAKQAAAPQVSEP VVNEQTSNTEVDVTPVSGSRIDRYVKPRVNEEEQK >gi|284795522|gb|ADDQ01000027.1| GENE 20 18966 - 21278 2179 770 aa, chain + ## HITS:1 COG:SPy0926_1 KEGG:ns NR:ns ## COG: SPy0926_1 COG0608 # Protein_GI_number: 15674946 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-specific exonuclease # Organism: Streptococcus pyogenes M1 GAS # 1 571 1 570 580 536 50.0 1e-152 MKKSNYQWQLQTKTELPVEFIEQLKKEEINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY DPFLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNR FVHGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPE AYAIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELPIELLDLVAIGTIADLVSLTDENR TFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRLGEAAPGVEL MTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLIDPNAPVHILAKQGWHEGVLGIV AGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVREQFTHFGGHHMAAGMT LPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATTTFIDQLRILAPFGTDNT VPTFVFKEITPTQIRQIGADNAHLKFQMNQEGAQLDAIAFQMGPQADELAQGTADVAGQL SINEWNGRKKPQLMVTDFAVLGRQLFDFRGKNNQTKPIPSEATAYLLFDEKNQKFISDPT ANIIVWSNQEELVEAVSQNQIEQLVFVDCPVEAITVKEIVEATEIQRIYMMFISPEEAYL NGMASREQFATLYKFILQQKEVNLRSQLSKVANYLNIQEKLLIFMIQVFFDLGFVTIESG VLNSIEKPDNRPLTESQVYQQRLKKIKTEEFLLYSDCQTIQQWLGNEEDK >gi|284795522|gb|ADDQ01000027.1| GENE 21 21281 - 21793 799 170 aa, chain + ## HITS:1 COG:L22735 KEGG:ns NR:ns ## COG: L22735 COG0503 # Protein_GI_number: 15672615 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Lactococcus lactis # 1 170 16 185 185 253 72.0 1e-67 MDLRDYIASIPDYPEKGIVFRDISPLMANGDAYREATKQIVDYAKEKRIDMVVGPEARGF IVGCPVAYELGVGFAPVRKKGKLPRETIEVTYDLEYGSDTLTLHKDAITPGQRVLICDDL LATGGTIKATIELVEQLGGIVVGCAFLIELMDLHGRDKIDGYDIVTLMEY >gi|284795522|gb|ADDQ01000027.1| GENE 22 21899 - 22096 286 65 aa, chain - ## HITS:1 COG:no KEGG:EF1686 NR:ns ## KEGG: EF1686 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 65 1 65 65 103 100.0 3e-21 MEAIRRVGFLFFVLVIGIFLGTLGLRLAFMIVTPLFILWFMSWDEKRYTRTRKQQQARYV YRKFP >gi|284795522|gb|ADDQ01000027.1| GENE 23 22290 - 22943 690 217 aa, chain - ## HITS:1 COG:L97827 KEGG:ns NR:ns ## COG: L97827 COG1272 # Protein_GI_number: 15672479 # Func_class: R General function prediction only # Function: Predicted membrane protein, hemolysin III homolog # Organism: Lactococcus lactis # 1 216 1 215 217 194 54.0 9e-50 MEKTHFSKKYLIVNEVLNAVTHGIGAGLSIAGLVILLVKGARLGSPIHVVSYAIYGSMLI LLFLSSTLFHSLIFTRAKKVFQVFDHSSIFLLIAGSYTPFCLISIGGWLGWTLFSLVWLI AIVGIVYKSLTLHKQETVKNISTIIYIVLGWLCIIAARPLYESLGFTGTALLVAGGVSYT LGAAFYSLKNVRFMHVVWHLFVMLAAILMYFSVLFYT >gi|284795522|gb|ADDQ01000027.1| GENE 24 23075 - 23917 1102 280 aa, chain + ## HITS:1 COG:SP1112 KEGG:ns NR:ns ## COG: SP1112 COG1307 # Protein_GI_number: 15900979 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 276 1 274 279 285 53.0 1e-76 MTNVKIVTDSSCTMEKSLRDELNIHMMPLSIMVDGVVYPDDDHLPGEKFMDMMANAKALP KTSQPPIGEFVELYDRLGEDGSEVISIHMTKGLSGTVEAARQASNLSSSKVTVIDSDFTD QGLSFQVIQAAKLAQAGAGVPEILAEIERVKQNTKLYIGISTLDNLVKGGRISRTTGLLS NIFNMKVVMDFENTELIPVAKGRGVKTFNKWFDELKSELSKIPNVRQIGISHADGLELAN GFKEGLQAIFKDMDIPVLHTNPVIATHTGKNAFAIMYYTD >gi|284795522|gb|ADDQ01000027.1| GENE 25 24021 - 24920 931 299 aa, chain + ## HITS:1 COG:SPy1492 KEGG:ns NR:ns ## COG: SPy1492 COG2755 # Protein_GI_number: 15675396 # Func_class: E Amino acid transport and metabolism # Function: Lysophospholipase L1 and related esterases # Organism: Streptococcus pyogenes M1 GAS # 23 280 27 273 286 257 49.0 2e-68 MKKQTQHILLTVLTPILIALGVFTLLSVAIPKAKPLLKQEKVATTAQKNQKEVIHYTAIG DSLTEGIGDLTNSGGFVPIVADDLKEHYNLNGVQTDNFGKNGDRSDQILKRIKEKPEIQK GLASADVITLTVGGNDLMKVISSNIFDLKVSSFNRPQKAYQRRVRRLLEEIREYNEKAPI YVLGIYNPFYLNFSEITEMQEIVDNWNQATEEMVQEQKRAYFIPINDLLYKGRGDEVGVT GGDSETTGSSASKEDLNNLLYEEDRFHPNNLGYQIMAGAVRDEMVKTEKEWITKSEGSE >gi|284795522|gb|ADDQ01000027.1| GENE 26 24922 - 25566 651 214 aa, chain + ## HITS:1 COG:SPy1491 KEGG:ns NR:ns ## COG: SPy1491 COG4698 # Protein_GI_number: 15675395 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 23 209 8 193 195 125 37.0 8e-29 MNEEKPKTSKSIKKTQPTNLKRNPWKIAFLVLVGLIIGSVAFVTFRATQVREPDLKKIPA IVEKEGEPVVTIQSKKQQVNKLIDFYLADFQKGSEIKYKFYLENDALLNGTFQVLGHDIP FYLYFDPYVMANGNVQLKAKSLSIGTLGLPIKEVLKFAKRSYKLPKWVEINPDDQTVLLR LDQFRMQNGLFVRAEKINLVDDDIRMNIYLPKEK >gi|284795522|gb|ADDQ01000027.1| GENE 27 25583 - 26098 664 171 aa, chain + ## HITS:1 COG:SPy0466 KEGG:ns NR:ns ## COG: SPy0466 COG0225 # Protein_GI_number: 15674584 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptide methionine sulfoxide reductase # Organism: Streptococcus pyogenes M1 GAS # 3 170 2 169 169 243 70.0 1e-64 MEEKAIFAGGCFWCMVQPFDTQPGIISVVSGYTGGHVPNPTYEQVLTHTTGHTEAVEITF DPAIISYEQLVDIYWQQTDPTDAFGQFQDRGDNYRPVIFYRSQEQKEIAEKSKERLANSG RFTEPIVTTIEPAAPFYPAEEYHQDFYKKDALRYGLSHQRRSEFIEEKWSD >gi|284795522|gb|ADDQ01000027.1| GENE 28 26104 - 26322 282 72 aa, chain + ## HITS:1 COG:lin1971 KEGG:ns NR:ns ## COG: lin1971 COG4479 # Protein_GI_number: 16801037 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 68 1 69 77 72 60.0 1e-13 MRRSFYHYLMTLKGPAKDSETDFANEAAKDIQFPKQTEDYHELSSYLEMNADYLSNMDIF DELWEKYLENNK >gi|284795522|gb|ADDQ01000027.1| GENE 29 26419 - 27852 1801 477 aa, chain + ## HITS:1 COG:lin1965 KEGG:ns NR:ns ## COG: lin1965 COG0793 # Protein_GI_number: 16801031 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protease # Organism: Listeria innocua # 9 470 31 491 496 304 39.0 3e-82 MKNKRTVPFYQYIISLLCVAFLAGGSSYIYFDHRVKKMSQEGAITNADLSKVQDLYNEIS TNYVGEVDKNELVEGALKGMSEAIGDPYSTYLNESAANDLNESLSGDFEGIGATMTMKDG EPVVAEAPVADSPAEKAGIKEGDIIEKVDGTATKGMKLAEVVSKVRGKKGTSVELTIQRE GETKNISIKRGKIPVKTVTGELDKNDAQIGSIKITSFGKKTYQELKETITNLRDKGAKSF VIDVRQNPGGLLDQAERMASMFLKNGETIVQFEDKKGRTMKEVASKELDGGFKVKEPVAV IIDGNSASASEIFAAALHESANVPLIGTKTFGKGTVQTVKDLNDQTEIKLTVLKWLTPKG EWINEKGIEPTIKADYPEYAYLKLIPRDKTLKEGDQSEDIQNLNAILAVLAYPVDENNAN YTAETKAAVSDLQQKNGLPVTGEIDNETATKIEATLGKLILENDAAYDTAVKEIQKN >gi|284795522|gb|ADDQ01000027.1| GENE 30 27870 - 28424 495 184 aa, chain + ## HITS:1 COG:lin1310 KEGG:ns NR:ns ## COG: lin1310 COG0681 # Protein_GI_number: 16800378 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Listeria innocua # 27 182 25 179 180 137 44.0 1e-32 MKKKRDYVGYLMYFLKILVPAIVAVFILRGFFLIPVRVDGHSMQKTLNQGDMIVMEKFSA IKRFDVVVFKTDTGSILIKRVIGLPGEAVRYENDQLYVNNQPIAEPYLTKNRKKDHETMP YTTNFDSKELLMQEKLPKDSYFVLGDNRRMSKDSRSFGAIHADQILGKAQFVYYPLTHMK IIPK >gi|284795522|gb|ADDQ01000027.1| GENE 31 28545 - 28877 443 110 aa, chain + ## HITS:1 COG:no KEGG:EF1677 NR:ns ## KEGG: EF1677 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 110 1 147 147 122 74.0 4e-27 MIRKTILASSILGVGLLIGACGNQTQTQMNSTNTSESSQPKVTESSRKSSESASKNQTTI KKVTDNEYKRILVMEEKATGTTYKSILIKKQNRLKIVNETTDELLYNGTL >gi|284795522|gb|ADDQ01000027.1| GENE 32 29026 - 29394 519 122 aa, chain + ## HITS:1 COG:BH3492 KEGG:ns NR:ns ## COG: BH3492 COG1725 # Protein_GI_number: 15616054 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 1 119 1 119 129 113 46.0 8e-26 MEFNFSGEKPLFQQVADQIAEGIFNGAYLEGEQIPSTTEISKSYQINPATVLKGMNLLVE RQLIEKKRGIGMFVLPGAQERVRSARKEEFLNKEVLEVVAEAKKLGITAEQLKQLIERGY DA >gi|284795522|gb|ADDQ01000027.1| GENE 33 29391 - 30245 808 284 aa, chain + ## HITS:1 COG:BH3493 KEGG:ns NR:ns ## COG: BH3493 COG1131 # Protein_GI_number: 15616055 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Bacillus halodurans # 2 278 4 282 283 173 35.0 3e-43 MSLRVESVSKKYHQKQALDNISITFEKETIYGLLGRNGAGKSTLLNIINNRSFATSGSVK LAGETVTDNEAALTHIYLMSEDNLFPPQLKIKDIFKTTEGFYGSFDWSLAEQMLSDFDLD GKKTFKKLSTGYRSIAKLIVALSVPCEYIFLDEPVLGLDANHRELFYTYLIETYQERPRT FVISTHLIEEIANLLEDIIIIDQGKLIRAESIETILKNGRIVSGPKEQVERYTQSLEILG MDTLGGAVTAYVYGDLPTEKAEVQIAPLNLQTYFVQLTNRKKEK >gi|284795522|gb|ADDQ01000027.1| GENE 34 30247 - 30978 549 243 aa, chain + ## HITS:1 COG:no KEGG:EF1674 NR:ns ## KEGG: EF1674 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 243 1 243 243 354 100.0 1e-96 MKFKTALRYRVIYQVRSLAIYFGFYALFGILFPLIGLLFSNDVNTVSSDAVIPCLVFMGI LSFLGMNTDFKLFIQNGLSRWTIFLVNFVSNAILSLVGSLAVLVLIKVFSGNFISHFQLS MKLIDVYAQGNFFMSWLLFFILLMLSGSLGLLAGVFNDRIDGVKKLIVLLLLLMIPILLG TIAQLGGAPMRLRMLHILQTMVGYQSTGFTVLPLLLTISCFVGINLGLAYLLNKHREIKR VNA >gi|284795522|gb|ADDQ01000027.1| GENE 35 31171 - 31851 288 226 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 3 202 4 199 223 115 35 2e-24 MAVIEAKNIKKSYGKNETKFDALKGVDLKVEKGESVAIIGKSGSGKSTFMHILALLDQPT SGDIYLNGKNVTSIRKKVLNKTRNEEFGFVFQQFFMNAKDTVLNNVLLPLKIGGISGSKR KKMALDALKAVGLEDKVQNKANNLSGGQKQRVCIARALVNNPQIIFADEPTGNLDSATGK KIEELLFDLNKNKGITLIIVTHDPDLAARCDRQVHVRDGLIVGGDE >gi|284795522|gb|ADDQ01000027.1| GENE 36 31852 - 33135 1382 427 aa, chain + ## HITS:1 COG:CAC3584 KEGG:ns NR:ns ## COG: CAC3584 COG0577 # Protein_GI_number: 15896818 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Clostridium acetobutylicum # 1 424 1 438 440 119 25.0 1e-26 MKFRDILKSASTNLMRNKGRTVLTIIAIFIGAFTIALTTGVNIGVNDYIDKQVGSVGGAN QLFIQPKMEMNVGNGTEPSKYNPEKKTSTIQQQSMLAEKDIEKIKKISDVTSVEPMKSVA IDYIKGADKHKYVFSATSALDEMTIDLAAGRKVSQTSQDFEINLSPEYVKALGYTSSKAA VGETVQLGISSSLKGQEQVIEAKIVGVRNASVIQNGLSLMNKALIDKVVSINQADLPEHL KNQYAMIIAEVKKDSTPEQIKDIKKDLDKAGYLATTVEDEIGMIRNIINAITGVLTMFGA IALLAASFGIINTLYMSVQERTREIGLMKAMGLSNGKVFTIFSVEAALIGFFGSILGILG AVGVGNLVNRLATDSFLKALTGFKLIQFSLPSSLTIILVIMFIAFLAGTLPARRAAKLDP IESLRYE >gi|284795522|gb|ADDQ01000027.1| GENE 37 33253 - 34194 1148 313 aa, chain + ## HITS:1 COG:lin0622 KEGG:ns NR:ns ## COG: lin0622 COG0604 # Protein_GI_number: 16799697 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Listeria innocua # 1 309 1 309 313 447 72.0 1e-125 MKAVVINQYGSKEVLEEAEVTLPELSEHQVLVKEYATSINPIDWKLREGYLKQMFDWSFP IILGWDVAGVITEVGSQVTDWQVGDKVFSRPETTRFGTYAEVTIVDDHLLAKIPETISFE EAAAVPLAGLTAWQALFDHGHLKEGEIVLIHAGAGGVGTYAIQLAKEAGAHVITTASAKN HTLLKKIGADEVIDYHTTNFAEVLTDVDLVFDTMGGEVQKNSFAVLKPNTGRLVSIVGIE DKQLAAEKNISAESIWLQPNGEQLQKIADLMAAGKVKSIIGEVFPFSRQGIYDAHALSET HHAVGKIVVQMAE >gi|284795522|gb|ADDQ01000027.1| GENE 38 34274 - 34876 617 200 aa, chain - ## HITS:1 COG:SA2306 KEGG:ns NR:ns ## COG: SA2306 COG0400 # Protein_GI_number: 15928097 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Staphylococcus aureus N315 # 1 184 1 184 197 217 55.0 1e-56 MHSIFKKGHPEAPVFVLLHGTGGDETSLLPIAQELNKQATVLSIRGDVSENGMNRYFKRL AEGHYDLEDLEKRGEALHKFIQQAANEHQFSLDKIIFIGYSNGANIAIQLLLTHPDSYHQ AVLYHPMFPVELTNQPDLTDTSVLLSLGEHDPIVPLPESMRVIQLFQNHGATVQEVWTQS HQLTYQEIKETQTWLAHLSS >gi|284795522|gb|ADDQ01000027.1| GENE 39 34889 - 35851 1232 320 aa, chain - ## HITS:1 COG:SA2307 KEGG:ns NR:ns ## COG: SA2307 COG0346 # Protein_GI_number: 15928098 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Staphylococcus aureus N315 # 1 319 1 319 319 443 66.0 1e-124 MKKEDQLLGIHHVTAMTSDAEKNYHFFTDVLGMRLVKKTVNQDDIYTYHTYFADDLGTPG TTMTFFDFPNNPKGLKGTNTISRTGFRVPSDAALTYYENRFNEFAVKHTGISEEFGKKVL RFWDFDDQAYQLISDELNQGVAAGTPWKKGPVPTEFAIYGLGPVEIAISYFHEFKEVFEE ILGFHVVAQEGNRYLLEVGQGGNGAQVVLVDDDTSSQAQQGYGEVHHVAFRLADRKSLGT WQALFDHLGLQNSGYVDRYYFESLYVRIGHILVELATDEPGFMGDEPYETLGEKLSLAPF LENRREYIESVIKPFNTKRA >gi|284795522|gb|ADDQ01000027.1| GENE 40 35862 - 36290 560 142 aa, chain - ## HITS:1 COG:SA2308 KEGG:ns NR:ns ## COG: SA2308 COG1846 # Protein_GI_number: 15928099 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 141 1 141 144 124 44.0 7e-29 MNQQQEALKAYIGLLRTSHRLEQLAKQDVTCYDLNITEFSVLELLLHKGPQTIQKIKEKI LIASSSTTYVIDQLHKKGYVTRTPSEKDRRITYVELTEAGKTLIEEIFPTHAKRIAEAFE QLSSEELTLLQKTLRKITNETK >gi|284795522|gb|ADDQ01000027.1| GENE 41 36419 - 37213 913 264 aa, chain - ## HITS:1 COG:BS_yvaG KEGG:ns NR:ns ## COG: BS_yvaG COG1028 # Protein_GI_number: 16080412 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Bacillus subtilis # 1 264 1 264 264 274 54.0 1e-73 MDLHLTNKLALITGSTKGIGKAIAIEMAREGTDVIINGRNEAEVTKVVKEIQTMFPDTHP QAGTADISIESQRATLLEKFPKVDILVNNMGIFEPMEYWDIDDATWEKFFTVNVLSGNAL AKAYLPKMLAQDFGRIIFIASEEAVMPSGEMPQYSMTKTMNLSLAKSLSNLTVGTHVTVN TVMPGSTLTEGVEKMLEDMYADSDIPKEDWEKDFMKNHRSRSQIQRLIRPEEIGRFVTFV ASPDSSSFSGEALRIDGGLVPTIF >gi|284795522|gb|ADDQ01000027.1| GENE 42 37464 - 38162 608 232 aa, chain + ## HITS:1 COG:no KEGG:EF1666 NR:ns ## KEGG: EF1666 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 232 1 232 232 374 100.0 1e-102 MKKQYYWNIPDNLLNSLKQRKKLYNFYKNEQNKARELVENCQSVLFPELVASLNKIDERI KLLIFYQNLEDCELSEEEIITVIEREYFVTFYETIEEPTTEIISSHSMYYLLQQPTKEML WDLDFSNMLKQGQLVDLMDYQKLTKCYQKLQNQAKNLIEKLNKETFYTFYSQLLLIDCQC KLLIEEALLKEESLMTVDECLTAIKQEIRKIHFEQFKYQHYLFEDLSLRYQV >gi|284795522|gb|ADDQ01000027.1| GENE 43 38267 - 38989 655 240 aa, chain + ## HITS:1 COG:no KEGG:EF1665 NR:ns ## KEGG: EF1665 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 240 1 240 240 411 100.0 1e-114 MNANRLKLLMMGLMVLDHISYFVPPEWALIFHVITRCVGVFFGYMAVEGFNYTRNVYRYN GRLYIWAAIMFVGNTLLNHLVNNPAVAVHNNIFFTLALGVSMLIVTKAMLEMPKISLKIV LLISILAILGIGAMFAEGGIVMLPFMLITYLARKRLVLRNCLYGALALFFLVTSFQWLGD WPTTIEMLAYNSDFMFITVLPFISLYNGERGSKAPFFKYLFYGFYPLHLWLIALIANYVH >gi|284795522|gb|ADDQ01000027.1| GENE 44 39049 - 40083 916 344 aa, chain - ## HITS:1 COG:L171552 KEGG:ns NR:ns ## COG: L171552 COG1434 # Protein_GI_number: 15672559 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 19 311 19 308 310 342 66.0 8e-94 MALLLFFLFIALLGFGILKINNRSILGGITLASGTLLSLVTLLFIGLDKIYLHFKNGDLI TLAIAYLLIPAVFIGICLYFIFNSRTMQTKEGKSVTAKLSAGLGLNLLIALPAFLYLLSV GTAQIPYVLFLFLLFLLLMDLLLTFLFAAYVLYSWMYQMIPLKKAVDYIIVLGSGIRSEE VPPLLKSRLDKGIEYYEKNPTAKFVVSGGQGPDEPVAEAFAMKKYLLSQNIPAEAILMED QSTTTYENMLFSKAIIQADWQKMPSDSKQPSVIFSTNNYHVLRGAMYAHRVGLKAEGVGA PTALYFLPTALIREYIALLVHDKRIVLFVFLLVTLLLGISILPI >gi|284795522|gb|ADDQ01000027.1| GENE 45 40199 - 40324 76 41 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKSKLDNNCLEKEKLDLLSFSFSIKNINEDIKINNLYAFTY >gi|284795522|gb|ADDQ01000027.1| GENE 46 40366 - 41187 818 273 aa, chain + ## HITS:1 COG:lin1406 KEGG:ns NR:ns ## COG: lin1406 COG0280 # Protein_GI_number: 16800474 # Func_class: C Energy production and conversion # Function: Phosphotransacetylase # Organism: Listeria innocua # 2 273 16 286 288 191 41.0 1e-48 MITVSIAGGSQPEILQLVKKALKEAEQPLQFIVFDTNENLDTENLWKYVHCSDEAAVAQE AVSLVATGQAQILLKGIIQTHTLLKEMLKSEHQLKNKPILSHVAMVELPAGKTFLLTDCA MNIAPTQATLIEIVENAKEVAQKLGLHHPKIALLSAAENFNPKMPSSVLAKEVTAHFNDQ QEATVFGPLSLDLATSEEAVAHKRYSGPIMGDADILVVPTIDVGNCLYKSLTLFGHAKVG GTIVGTKVPVVLTSRSDSTESKFHSLRFAMRQV >gi|284795522|gb|ADDQ01000027.1| GENE 47 41206 - 42288 1042 360 aa, chain + ## HITS:1 COG:lin1407 KEGG:ns NR:ns ## COG: lin1407 COG3426 # Protein_GI_number: 16800475 # Func_class: C Energy production and conversion # Function: Butyrate kinase # Organism: Listeria innocua # 4 352 5 355 355 351 49.0 1e-96 METVLVINPGSTSTKLALFANHDCLAEETLRHSVQELAPFENVVSQTSFRKQMIAEFLET HNIIQLAAVVGRGGLLKPIPGGTYLVDQQMLEDLRTERFNTHASNLGAILANEFAEKYHV PAFIVDPVVVDELQPLARISGLKGIQRRSVGHALNQKAVARKIAEDLGKTYEQSNFIVVH LGGGISLGAHQKGRMVDVVNGLDGEGPYTPERSGALPLVEFAQWILEQELTISQVKKLIA GNSGLKSYLGETDLRHIQAQIAAGDQTANYYLKGMCYQIAKSIGEMAVVLEGTIDAIILT GGAAYSQTVVQEISQKVTWIAPIKVYPGEMEMAALYEGVNRVLTGEEQALNYSEAKIEQE >gi|284795522|gb|ADDQ01000027.1| GENE 48 42294 - 43703 832 469 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 6 468 5 457 458 325 38 2e-87 MAEQTDLLILGGGTGGYVAAIRAAQKGLNVTIVEKYKLGGTCLHKGCIPTKALLRSAEVF DTLKQAASFGIETEAASIDFSKIQQRKEGIIEQLHKGVEGLCKKNKIKILAGEGAILGPS IFSPVSGAVAVTFNDPTREEEIIVPKNVIIATGSSSKTLPNLPLDEEFILSSDGMLELEE LPESIAIIGGGVIGVEWASLLNSLGVNVTIIEFLDRLLINESATISKELKKRLEQRGINI LLGSKVQEAKVTGQKVQVEVAGQETLTVDKVMVAIGRQPNINKLGLQNTSVKYTDKGIEV NEFYQTTEGHIYAIGDCIDTLQLAHVAMKEGELAVQHLLGETVEPLNYTNVPRGVYTNPE IASVGYTRETLPAEKEVVIGTFNFNGNGKSLVYGETDGFIEVIRDKKTDDLLGVSMIGPH VTDLIAEASTAMYLDAAPIEIGEAIHAHPTMTEVLQEAALDTYGLAIHK >gi|284795522|gb|ADDQ01000027.1| GENE 49 43720 - 44706 1271 328 aa, chain + ## HITS:1 COG:lin1409 KEGG:ns NR:ns ## COG: lin1409 COG1071 # Protein_GI_number: 16800477 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit # Organism: Listeria innocua # 4 326 3 325 331 322 53.0 5e-88 MKALKKSGLSKEELIQAYREVLRGRRLDERLWQLTRIGKTSFNISGQGAEVAQVAMAMAF DPQKDYFLPYYRDMTACLVWGMTSKDILMGSFGKEADPSSHGRQMPNHYGSKEHNIVSFS STVSTQMPLATGVGYAAQLQKADFVALTTTGEGSANQGEVQEAMNFAGVKKLPVIFVVEN NEYAISVPIEEQYANKRMADRAKAYGFEGVTVDGSDFTEVYLAFKEAVKAARGKKGPKLI ELMVSRLTSHSADDDQSVYRSKEEIEEMKKNDAVKLFEKQLLEEGYLTDEDIAKIDEEIR AEINQATDEAEAMPDPVPTSILEEVYAK >gi|284795522|gb|ADDQ01000027.1| GENE 50 44728 - 45714 1499 328 aa, chain + ## HITS:1 COG:lin1410 KEGG:ns NR:ns ## COG: lin1410 COG0022 # Protein_GI_number: 16800478 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit # Organism: Listeria innocua # 1 328 1 327 327 424 61.0 1e-119 MAEMTYLEAINLGISEEMARDEKVVIFGEDVGGDKGGVFGVTKGLAAKYGDERCFNTPLT EGLIGGLAVGLGLMGYRAIGEFQFADYILPATNQLLSEARTMRYRTKGDWTAPIVYRTPY GGGVRGGLYHSQSTEKVFCGQPGLRVVTPSNPYDAKGMIKAAIRSDDPVIFYEHKRLYRL LKDEVPADDYIVPIDKANVVRTGSDLTVISYGMTLQLALAAAEKLAAEGIDAEIVDVRSL YPLDRETLVAAAKKTGKVLLVTEDNKEGSVMSEIAAMISEDALFDLDAPIQRLAGPDCPS MPYALPLEREFLINEEQVLAAMKELAEF >gi|284795522|gb|ADDQ01000027.1| GENE 51 45738 - 47036 1500 432 aa, chain + ## HITS:1 COG:lin1411 KEGG:ns NR:ns ## COG: lin1411 COG0508 # Protein_GI_number: 16800479 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Listeria innocua # 1 428 1 411 416 372 49.0 1e-103 MATKEIKMPHLGESVTEAAIVQWLVKPGDSVKRYDPLMEVVSDKVTTEVPSDFDGVVKEF LISLDTDVPIGTAVMTLETEETTEETEVATLAPVKEASAEQAQEHETAETTSTATSHQKN NGRYSPAVLKIAQEKKIDLTQVTGTGRDGRITRKDVTNFTPTQARTPEKTVSPGTSPSIS EEPVASQNESAATASPTETSTDKIVSADPVRKAIAKKMVQSVNEIPHAWLMVEADVTNLV QLRNSLKDEFKQQEGLSLSFFPFFAKAVIQALKKNPKINTSWDDGSIIYHKDVNLSIAVT TDEHLYVPVIQQADNYSIAGLAKEINRLAQEVRQGTLASKEMQGGTFTLNNTGTLGSVQS MGIINHPQAAILQVESINKRLVPTADGGFKVADMVNLCLSIDHRILDGQQAGKFLRDVKD NLAKYNADTDIY >gi|284795522|gb|ADDQ01000027.1| GENE 52 47180 - 48232 1240 350 aa, chain + ## HITS:1 COG:SPy0851 KEGG:ns NR:ns ## COG: SPy0851 COG3641 # Protein_GI_number: 15674884 # Func_class: R General function prediction only # Function: Predicted membrane protein, putative toxin regulator # Organism: Streptococcus pyogenes M1 GAS # 15 350 12 352 352 249 49.0 6e-66 MPTDKLDAQLTPRIFFNKVLAGTASGTIIALIPNAVLGAILKYFAEYKIIEMIIHAAQIF QLATPLIIGGLIAFQFGLTPQKMMIAGGAAFAGSGVIKFNSEVKGFIGAGTGDIINIMIT ASVAVLLLLVIDKKFGSVEIIALPIVVGVGAGLFGMLIYPYVTQITVAIGKVINNFTDFQ PIIMSILIACSFAALIISPITTVAIGLAIQLNGLSAGAAAMGIAATTVVLVINSWNVNQS GVTLAVSLGGMKMMMPNLFKYPIILIPCLFTATISAIPVVLFNISGTPQSAGFGLVGLVG PLASLDAGLGILPLLFSWFVVPIVAGLFSKFLFEKVLKIYDSKIVFAYQG >gi|284795522|gb|ADDQ01000027.1| GENE 53 48241 - 49131 910 296 aa, chain - ## HITS:1 COG:SA2330 KEGG:ns NR:ns ## COG: SA2330 COG0583 # Protein_GI_number: 15928121 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Staphylococcus aureus N315 # 1 295 4 292 295 117 25.0 4e-26 MNIQLLKYFIEIVNTRSLSAAARNLFVTQPTLSLALKKMESELGTALFDHSDQPFQLTDT GVYLYEHGQEVVFQFDQLVTDIREMNQKPVKKQLRLGLTTLFAVQFMKEISRFLTTHPHV NLILQQDGSPKLQTMLANKEIDMGLISFPNTLPEIIHIEPLETTTKGYHVYVVVPESNPL SQYEKLTFKDLKDQRFSSLSDNFMIGRLLLDRTRSFGYEPNIILHNDDLQVLLYSLQKNN SICLLPIEYYEVGKSQGLKWIPLKDKFDYFPIGIALRRDFSLTEDVRDFIQIIKEN >gi|284795522|gb|ADDQ01000027.1| GENE 54 49308 - 50249 992 313 aa, chain + ## HITS:1 COG:L157055 KEGG:ns NR:ns ## COG: L157055 COG1893 # Protein_GI_number: 15673305 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate reductase # Organism: Lactococcus lactis # 1 313 1 312 312 407 62.0 1e-113 MKIIIAGAGAMGSRFGLMLHQAGNDVIFVDGWPEHIEAIRKNGLVADFNGEVVTAKIPIY PQTEVASIDFTADLVILFTKAMQLAGMLEALEHFLNKNTKVLCLLNGIGHEDIIKKYVPY ENILLGNTMWTAGLEGPGKVKLFGNGSIDLQNLGAQSEQAAEAVIKVLNNAGLNARYSEN ILSSIYKKACVNGTMNGLCTLLDCNMADFGETEQADQIVQQIVNEFLAVAEAEQVTLDKQ AVLQQIRSCYNRETIGLHHPSMYQDLITNHRLTEIDYINGAIVRKGKVYGIATPYCQFLT ELIHCKENLLHAK >gi|284795522|gb|ADDQ01000027.1| GENE 55 50525 - 51376 932 283 aa, chain + ## HITS:1 COG:L128951 KEGG:ns NR:ns ## COG: L128951 COG1161 # Protein_GI_number: 15673276 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Lactococcus lactis # 1 275 1 275 282 323 54.0 2e-88 MTIQWFPGHMAKARREVSEKIKYVDIVFELVDARLPLSSRNPMMDQIVQQKPRLVLLNKG DLADNDQNKKWQHYFQKKGYQTLVINAQQNKGINKIVPAAKEALKEKLAREQAKGLKPRA IRAMCIGIPNVGKSTLMNRLVGKKIAQTGNKPGVTKGQQWLRSGSQLELLDTPGILWPKF EDEEIGKKLALTGAIKDQLLHLDDLAIYGLEFFARFYPQRLTERYGLTEEELFLPAPEQL MLISQKRGFRDDYNRASEMIILEIRSGKLGTYTLDRWEELGDE >gi|284795522|gb|ADDQ01000027.1| GENE 56 51378 - 52145 1201 255 aa, chain + ## HITS:1 COG:SPy1162 KEGG:ns NR:ns ## COG: SPy1162 COG0164 # Protein_GI_number: 15675138 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HII # Organism: Streptococcus pyogenes M1 GAS # 5 254 4 256 263 269 56.0 5e-72 MAKESIQAIKEALLTVTDATDERLASWREDERSGVQQAIKQWERRQLAKEKEWQLFKEMS QFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLY NQIQEQAVAIGLGIADQGVIDQINIYQATKQAMKMAIDDLAFTPDYLLIDAMQLDVPQPQ ESLIKGDARSISIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKYGV TPIHRRTFAPIKDMI >gi|284795522|gb|ADDQ01000027.1| GENE 57 52206 - 53069 761 287 aa, chain + ## HITS:1 COG:SP1266 KEGG:ns NR:ns ## COG: SP1266 COG0758 # Protein_GI_number: 15901126 # Func_class: L Replication, recombination and repair; U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake # Organism: Streptococcus pneumoniae TIGR4 # 81 287 79 284 286 219 52.0 5e-57 MEILQRQLLFKLAVCQGIGNLGILKVLQEAIAQKRVDFSSTEIIRIAEIKKYRELFEQSW LHHTIHSEALYIRQCQHQFMTILDAVYPKLLREIYNPPAILFYRGNLQLLSRRKIGIVGA RYATSYGLRVTEALVPKIVKEGFTIVSGLAKGIDSRSHEMAIQNGGQTIGILGTGLDVYY PYEKKELQQTMKQNQLVLTEYVNGSGPKKYHFPARNRIIAGLSLGVCVMEARKNSGSLIT AQAAMDYGREVFAVPGSIFQSFSTGCHELIQDGAKCVQTIDDICEEL >gi|284795522|gb|ADDQ01000027.1| GENE 58 53160 - 53813 592 217 aa, chain + ## HITS:1 COG:SP0288 KEGG:ns NR:ns ## COG: SP0288 COG1266 # Protein_GI_number: 15900222 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Streptococcus pneumoniae TIGR4 # 19 217 19 216 230 79 29.0 7e-15 METVVRKRWLFGMQLLGFLILDQIPLMMVSVVQFSTENFWFRFVSGLVAVGLGAYFVYLF VAFLKKKKLIIWTFLGIKETLPVVLLGLVIIFCVGIFGDFLLRLEGLETTSNQQSVEEIV QSIPKGLILIFAGVIGPIFEEGIFRVGIQAFFKPASKIGILVSSILFALVHTPTDIGSFV IYWGMGLALSWVYLRTGRFEAAVLTHFIWNVLGILML >gi|284795522|gb|ADDQ01000027.1| GENE 59 53998 - 56076 2364 692 aa, chain + ## HITS:1 COG:L0298_1 KEGG:ns NR:ns ## COG: L0298_1 COG0550 # Protein_GI_number: 15673212 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Lactococcus lactis # 4 574 26 589 589 810 71.0 0 MAYKYLVIVESPAKAKTIEKYLGRNYKVVASVGHIRDLPKSKMGIDIENNYEPHYISIRG KGDVIKSLKAAAKKAEKVYLAADPDREGEAIAWHLAYLLGLDLKDKNRVVFNEITKEAVK AAFKEPRTINVDLVDAQQARRILDRLVGYSISPILWRKVKKGLSAGRVQSVALKMIIDRE NEIREFKPEEYWSIDGNFQKGRKKFKANFWGVDGKKKKLPNAEAVKEITSRIDGKDYDVT KVEKKERKRNPALPFTTSSLQQEAARKLNFRTRKTMMVAQQLYEGIALGKQGTVGLITYM RTDSTRIADSAKAEAAEFIEKTYGDEFSAHGGRKAKNTQGAQDAHEAVRPSSVLRTPDEM KKYLDKDQLKLYTLIWSRFVASQMTPAILDTMKVTLQQNGVTFIANGSKVKFKGFMQVYV EGRDDGKEDKENILPELVEGDVVKSVDIEPKQHFTQPPARFSEATLIRTLEENGVGRPST YAPTLETIQRRYYVKLTNKRFEPTELGEIVNSLVSEFFPQIVDTHFTATMETDLDKVGEG QEKWVEVVDRFYKPFEKELTNAEEKIEKIQIKDEPAGFDCELCGHPMVIKLGRYGKFYAC SNFPDCRNTKAIVKEIGVTCPVCHEGQVIERKSKKNRIFYGCSRYPECDFTSWDKPVGRP CPKCGQYLVEKKVKGGKQVVCINGDYEENVQK >gi|284795522|gb|ADDQ01000027.1| GENE 60 56184 - 57491 1656 435 aa, chain + ## HITS:1 COG:lin1315 KEGG:ns NR:ns ## COG: lin1315 COG1206 # Protein_GI_number: 16800383 # Func_class: J Translation, ribosomal structure and biogenesis # Function: NAD(FAD)-utilizing enzyme possibly involved in translation # Organism: Listeria innocua # 1 434 1 434 434 650 73.0 0 MTKKVTIIGAGLAGSEAAWQVANAGVPVDLYEMRPVKKTPAHQTENFAELVCSNSLRGNS LTNAVGVLKEEMRRLNSIIIGSADQTAVPAGGALAVDRDSFSETITEKIKSHPLITIKNE EITDIPEGIVIIATGPLTSESLSQKIQEFNGSEGFYFYDAAAPIIDKSTIDMDKVYLKSR YNKGEAAYLNCPMTEEEFNAFHEALVNAEVVPLRTFEKEKFFEGCMPIEVMAQRGIKTML FGPMKPVGLEDPKTGKRPYAVIQLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLEN AEFVRYGVMHRNSFMNSPELLKPTYQSKKRDDLFFAGQMTGVEGYVESAASGLLAGINAA RLAKGEEPIEFPRETTLGSMAYYITHAEGKHFQPMNANFGLFPELPERIRDKKERYEAIA NRALDVQAQVIQSLD >gi|284795522|gb|ADDQ01000027.1| GENE 61 57703 - 58602 935 299 aa, chain + ## HITS:1 COG:lin1316 KEGG:ns NR:ns ## COG: lin1316 COG4974 # Protein_GI_number: 16800384 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Listeria innocua # 2 299 3 300 300 312 54.0 5e-85 MEEKNWPELFARYLIVERGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLS ELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDA LFESAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVP FGSFAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNA EIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHPRA >gi|284795522|gb|ADDQ01000027.1| GENE 62 58631 - 59179 817 182 aa, chain + ## HITS:1 COG:lin1317 KEGG:ns NR:ns ## COG: lin1317 COG5405 # Protein_GI_number: 16800385 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent protease HslVU (ClpYQ), peptidase subunit # Organism: Listeria innocua # 5 182 2 179 179 244 71.0 9e-65 MVESQFHSTTICAVEKDGKFAMAGDGQVTMGESVVMKGTAKKVRRIYNDEVVVGFAGSVA DAFTLEEKFEGKLNEYNGNLTRAAVELAQEWRTQQSMQKLEAMLIVMNKEEMLLVSGTGE VITPDDGILAIGSGGNFALSAARAMKNFGDKEMPAKEIAKNALNIAADICVFTNHNIIVE EL >gi|284795522|gb|ADDQ01000027.1| GENE 63 59194 - 60597 1348 467 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 7 467 9 466 466 523 59 1e-147 MNELNKTPKEIVKELDQYIVGQQAAKKSVAVALRNRYRRLQLEENMQQDITPKNLLMIGP TGVGKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKQQYSR VYAQALKKANQRLVKVLVPGIKKEQKQAGGNQFEQMMNMFNMAQQQQEAQEEVTEDIRTN RRTILEQLEKGLLDNREVTIEIEEPKKTMPAMNNGLEQMGIDLNETLGALSPKKKIERTV TVKEAQELLVKEESAKIVNDADIHSEAIRLAESSGIIFIDEIDKITSKSQQNSGEVSREG VQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDDLT ADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIERLAHIAYDVNRDTDNIGARRLH TILERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIVQNEDLSRYIL >gi|284795522|gb|ADDQ01000027.1| GENE 64 60618 - 61400 909 260 aa, chain + ## HITS:1 COG:SPy1777 KEGG:ns NR:ns ## COG: SPy1777 COG4465 # Protein_GI_number: 15675618 # Func_class: K Transcription # Function: Pleiotropic transcriptional repressor # Organism: Streptococcus pyogenes M1 GAS # 1 260 1 259 260 273 56.0 2e-73 MATLLEKTRQVNELLQKNNLFDVQAELPYNKMAMILGDILESNAYIISSSGDLLGYTEKL DVNNARIKNMFKEKKFPQGYTEAVDMLKVTEANIPIDSDLTAFPFESRELYPFGLTTIVP LYGAGKRLGTIILARVEKSFNEDDLVLAEYSATVVGMQILYHQSRTIEAEVRSATAVQMA INTLSYSELKAVHAIFEALDGEEGRLTASSIADEIGITRSVIVNALRKLESAGIIESRSL GMKGTYLKVLNQQFIKELEK >gi|284795522|gb|ADDQ01000027.1| GENE 65 61434 - 62309 1019 291 aa, chain + ## HITS:1 COG:lin1322 KEGG:ns NR:ns ## COG: lin1322 COG2017 # Protein_GI_number: 16800390 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Listeria innocua # 3 290 2 289 290 257 43.0 2e-68 MTVQIENEFLIATFAEEGAELVSLQSKETGIEYIWQGNPEFWARHAPVLFPIVGRLKEDT YMYQNQAYHLTQHGFARDQVFDVIEKGGEEVSFSLKSTKATKKKYPFDFELVITYTLEHQ ELTVNYQVENTGKEEMYFGIGGHPAFNVPLESSLTFEDYYLSFSPKKSRTQIPLAGPFID LANKTLAQTNTSFDLTHQLFENDAMIFETKGQTAITIATDESDHQVTLSYPEMPFVGIWS PTPKEAPFVCIEPWCGIADAVDATGQLAEKFGINKLPANELFKTQYMISVK >gi|284795522|gb|ADDQ01000027.1| GENE 66 62351 - 62980 793 209 aa, chain - ## HITS:1 COG:SP0851 KEGG:ns NR:ns ## COG: SP0851 COG0344 # Protein_GI_number: 15900736 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 1 205 1 204 213 194 53.0 8e-50 MKIVILLLVAYLLGSIPSGVWIGKLFFKKDIRQFGSGNTGTTNTFRVLGKPAGITVLLMD ILKGTLATSLPYLFGLQGVNPLFFGVAAVLGHTFPIFANFKGGKAVATSAGMLLAYSPTF FIYSALIFVICLYLTSMVSLTSMISAVLITLSTIILPFTVPAILPTFNWLLTVIAIALTT FIFVRHRENIQRIKNGTESRLSFGLRAKK >gi|284795522|gb|ADDQ01000027.1| GENE 67 63533 - 64492 1256 319 aa, chain + ## HITS:1 COG:BS_yvrC KEGG:ns NR:ns ## COG: BS_yvrC COG0614 # Protein_GI_number: 16080371 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Bacillus subtilis # 21 315 20 314 314 153 32.0 4e-37 MKKFTLTMMTLGLVATLGLAGCGKQEKKATTSSEKTEVTLPTKDRSGKEITLPKEATKII SLVPSTTEVIEDLGKTDQLIAVDTQSSTMMTDLKKLPQMDMMAVDAEKLIALKPQIVYVN DINLASSESVWKQVEDAGITVVNIPTSTSIKTIKEDVQFIADSLSEHEKGQKLIKIMDQE IDEVAKIGKTIKKPKTVLFEVAALPDIYSFGNGTFLNEMIETIGAKNVLANEKGWLPVTE EAAIAAKPEVILTNVNYMKDPAKEILARKNWESVPAVQNKEVFEIDNMSSSLPNNHITKA LKQMAKAVYPEEYKDLKDE >gi|284795522|gb|ADDQ01000027.1| GENE 68 64485 - 65492 1171 335 aa, chain + ## HITS:1 COG:BS_yvrB KEGG:ns NR:ns ## COG: BS_yvrB COG0609 # Protein_GI_number: 16080370 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Bacillus subtilis # 18 330 29 346 353 201 40.0 2e-51 MSKKTCLILMLLISMSMLFLGIKIGSVQISLTDLLQILVKKTVSEDGILEGIIWNVRLPR VVMAYLVGAGLAVSGTVMQSLLGNPLASSYTLGVSAGASLGAALIMVTGVTASILGAFLL PLTGFIFGLATVFLVLLFTQTMDSQMSNQTVVLVGMIMTLFVGAILTLITALFQDYLKQL VFWQMGSFSGSNWQKIAIYCPILLVSSLFLWFDANALDVLGLGEEHAMLAGVEVKTAKLR IILLASLLAGSAVSFVGVIGFVDLIAPHIVRRYLGATHRWLIPGSAILGGTIMVIGDTIA RTILSPREIPIGAVTALIGAPFFLYIYFKKRGVAA >gi|284795522|gb|ADDQ01000027.1| GENE 69 65489 - 66256 220 255 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 226 1 226 245 89 29 1e-16 MIELKKTAVTLQQTPILKDISLVFPTGSKTCILGPNGCGKTTLLKTIAGLVPYSGSVLID GQEVHGQKRKELATKVAMMSQFTTVAFDYTVYETVLMGAYRQQAQRFLPIVSKQEKERVL YYLERTGLLPLKDKVVNQLSGGQQQRVFLAKLFVQDPEIILLDEPNNHLDIRYQQELIQQ LNEWSAQEGKTLIGVFHDIRLALTLSEKIVFMKQGKVAAQGDFQTLASKEFLQTIFETDI VSYFQKQHKVWETIQ >gi|284795522|gb|ADDQ01000027.1| GENE 70 66386 - 66841 617 151 aa, chain + ## HITS:1 COG:lin1109 KEGG:ns NR:ns ## COG: lin1109 COG4917 # Protein_GI_number: 16800178 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Listeria innocua # 5 147 1 143 143 162 55.0 2e-40 MEVAMKRIILMGAIGCGKTTLCQALQGKELIYDKTQAVEFHTEMIDTPGEFILHRQYYNA LNVTAAEADVIGLVQSAVETQQVFSPGFGSIFPKEIIGILTKIDLAQDSQQLDIVRQQLK SAGATRIFEISSVEKIGLQELVDYLEEDEAE >gi|284795522|gb|ADDQ01000027.1| GENE 71 66838 - 67419 784 193 aa, chain + ## HITS:1 COG:lin1172 KEGG:ns NR:ns ## COG: lin1172 COG2096 # Protein_GI_number: 16800241 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 190 1 188 188 209 56.0 3e-54 MKIYTKTGDKGMTKLVGSSTVAKDSDRVESYGTIDELNSWVGYIISQLPQENQEIKEELE ALQHLLFDAGTDLSTPIEAQRPFKLQKESVHWLEQRIDFYTAQSPDIDRFILPGGTSAAS MVHVARTIARRAERIIVRLNWTAKINEEVLIFTNRLSDYFYALARYLNVQAQRTDVFYER SEKVFHKIKEDGL >gi|284795522|gb|ADDQ01000027.1| GENE 72 67906 - 69036 1038 376 aa, chain + ## HITS:1 COG:lin1135 KEGG:ns NR:ns ## COG: lin1135 COG1454 # Protein_GI_number: 16800204 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Listeria innocua # 1 376 1 378 379 408 55.0 1e-114 MRTIHFPTELWVGEGALANLETLHDRRVFIVTDPFMVDSGFVNEVTKHLTKSEWQIFSDI IPDPPIDKIAAGIKQLAAFQGDTILALGGGSAIDAAKAMKFFGKRTLQTQIAEFIAVPTT SGTGSEVTNFSVITVAETGTKIPLVTDEIQPEIAILDTNLVMSVPPKITADTGMDVLTHV IEAYVSTEANPISDALCEKVVRLVFDNLEIAFNEGSNQQARENMHLASCMAGMAFNVTSL GLNHGIAHAAGARLHVPHGRMNAMLLPEVIAYNSGLANGKVTNEPTAKRYAQLANCLNDT QTTNARIGVQQFIRQIKQLRQKLNMPATFSDYGLPKEEVQAAIPKIAEGALMDGCTKTNP VQPTAAEVTKILNSIL >gi|284795522|gb|ADDQ01000027.1| GENE 73 69196 - 69543 406 115 aa, chain + ## HITS:1 COG:lin1108 KEGG:ns NR:ns ## COG: lin1108 COG4810 # Protein_GI_number: 16800177 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Listeria innocua # 2 115 5 116 116 151 73.0 2e-37 MEEKQRMIQEYVPGKQVTLAHIIASPNKEIYTKLGLPEGTSNALGILTITPSEAAIIAVD IATKSGDIQIGFIDRFSGSVVISGDVSSVEAALQAVIEGLQQILNFSVTCKITRT >gi|284795522|gb|ADDQ01000027.1| GENE 74 69571 - 70143 687 190 aa, chain + ## HITS:1 COG:lin1136 KEGG:ns NR:ns ## COG: lin1136 COG3707 # Protein_GI_number: 16800205 # Func_class: T Signal transduction mechanisms # Function: Response regulator with putative antiterminator output domain # Organism: Listeria innocua # 1 190 4 193 193 241 69.0 8e-64 MDGRIVIVDDEPITRLDIRDIVIEAGYEVVGEAADGFEAIEVCKKTQPDLVLMDIQMPIL DGLKAGKKIVQDQLASSIVFLSAYSDVQNTDKAKKLGALGYLVKPLDEKSLIPTIEMSIE RGKQTQLLLNQIDKLSLKLEERKIIEKAKGILVKENHISEEEAYQMLRTLSMNKRARMSE IAELIVMDDE >gi|284795522|gb|ADDQ01000027.1| GENE 75 70144 - 71577 1234 477 aa, chain + ## HITS:1 COG:lin1137 KEGG:ns NR:ns ## COG: lin1137 COG3920 # Protein_GI_number: 16800206 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 2 472 3 479 485 409 48.0 1e-114 MKRLEQLCHQYTNLSESDIKELQRTARYLSSTTLYQSADVFIDVYKEMSQQALVVYHKPP AKTTSLYSGDVVGMEALLKNEPGVLRTMQTSLNSIGLLAVTQENRLIKQNIYPIRNEHRT IGVIIVEIAADEEIQADLQKEELNNCQLAKVAKSTSQVDALFIDQLAEAVLIFDAAGHLL ITNHNAQELYRKLGYRDNIIGMSYDNLSIDYTTFEYVLYQMKYKMSNQPIESKTTYLNYY FKVRKVWLASEEQLIMIIQDNTEFKEKEAEIISKSVAIREIHHRVKNNLQSVVSLLRIQE RRTQSPEAKKVLHESVNRIMAIAATHELLSKQVKDDVALRQTLEAVMYNFRHLFQGAQPI EMMMDVDPAIMVSSEQMVTISLVVNELLQNIFDHAFEPQTSGVVKLSGTLDNKMITITVT DNGKGYDVHQSNETSLGLMIVKSYVKDKLKGKITIESNKQGTKTCFYFEQNTSDVVH >gi|284795522|gb|ADDQ01000027.1| GENE 76 71668 - 73092 1501 474 aa, chain + ## HITS:1 COG:lin1138 KEGG:ns NR:ns ## COG: lin1138 COG4819 # Protein_GI_number: 16800207 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition # Organism: Listeria innocua # 4 474 3 473 473 561 60.0 1e-159 MSKETLLTVGIDLGTSTTQLVLSELTVENFASAFTVPRISISDKKVIYRSDIIFTPLLNQ SEIDAEPIKAFVAEQYRQAGIHKQDIQMGAVIITGETARKSNANNVLRALSGYAGDFVVA TAGPDLESIIAGKGAGAQTYSETKRKPVVNLDIGGGTTNLAVFKDGEVIDTACFDIGGRL IKLDQQQKITYIAPKIQEIINKKGLTLHLGDQATEQNLLPIISELVAVLENSIGLGTQSP FYQLLVTNHPLRKGGELPIVTFSGGVADCLNTTSTNLFKYGDIGLLLGKYLRKSLIFSEK EVLESAETIRATVVGAGSHTAEISGSTIAYREQILPVKNIPILKLAQEDETLTVTELGQR IQEKLNWHRIEETPQIALAIRGMSNPTFADIQRYGQGIVEGLASLVAEQIPIIVMVDEDM AKALGHALSAHLPKDYPFICLDSVKVENGDYVDIGLPVAEGAVLPVIVKTLVFN >gi|284795522|gb|ADDQ01000027.1| GENE 77 73110 - 74474 1637 454 aa, chain + ## HITS:1 COG:lin1139 KEGG:ns NR:ns ## COG: lin1139 COG4303 # Protein_GI_number: 16800208 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine ammonia-lyase, large subunit # Organism: Listeria innocua # 1 454 1 454 454 752 79.0 0 MILKTKLFGKVYQFTSVKEVLAKANEEKSGDKLAGVAANSAEERVAAKVVLSELSLNDLF NNPVVDYDEDEVTRIIIDQVNMRIFESIKHWTVAELREFILSSETTDFDIKRISRGLTSE MIAAVCKLMSNMDLIVGAKKINIEKTANTTIGRPGTFSNRLQPNHPTDNVDGIMASVMEG LSYGAGDALIGLNPVDDSTESVKRILNKFEEFRSEWEIPTQTCVLAHVTTQMEAMRQGAP TGLVFQSIAGSEKGNTAFGLNAEILAEAQDLALHSGQATGPNVMYFETGQGSELSSEANF GADQVTMEARCYGLAKKFDPYIVNTVVGFIGPEYLYDSKQVIRAGLEDHFMGKLTGISMG CDVCYTNHMKADQNDMENLAMLLATADCTYIMGIPHGDDVMLNYQTTGFHETATIRETLG LRPIKEFEEWMEKMGLMENGKLTSRAGDASVFIK >gi|284795522|gb|ADDQ01000027.1| GENE 78 74492 - 75403 1253 303 aa, chain + ## HITS:1 COG:lin1140 KEGG:ns NR:ns ## COG: lin1140 COG4302 # Protein_GI_number: 16800209 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine ammonia-lyase, small subunit # Organism: Listeria innocua # 1 300 1 293 293 405 72.0 1e-113 MNEKELKEMIAGILTEMVADNQAVSTATVTAEEKPVTTHVTETTEIEEGLIPDITEVDLR KQLLLKNAVDPEALLKMKAFSPARLGVGRAGTRYMTSSTLRFRADHAAAQDAVFSDVSED LVKEMNFISTKTICNSKDEYLTRPDYGRQFDEENSEIIRKNTTPKAKIQMVVGDGLSSAA IEANIKEVLPAIKQGLNMYNLDFDNVVFVKYCRVPAMDKIGEITDADVVCLLVGERPGLV TAESMSAYIAYKPTVGMPEARRTVISNIHKGGTPAVEAGAYIAEIIKKMLDKKKSGIDLK EAE >gi|284795522|gb|ADDQ01000027.1| GENE 79 75417 - 76070 999 217 aa, chain + ## HITS:1 COG:lin1141 KEGG:ns NR:ns ## COG: lin1141 COG4816 # Protein_GI_number: 16800210 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Listeria innocua # 1 217 1 217 217 290 76.0 2e-78 MKNDRLGANVLSMKVIPNVDPALAKELSLKPEHRSLGIVTSDCDDVTYVALDEATKAADV TVVYGKSMYAGAANASTKLAGEVIGIIAGPSPAEVNSGLSVITQVIEEEASFYSANEDDS IVYFAHVVSRTGSFLSEQANIPEGEAIAYLIAPPLEAMVGLDAAMKAADVQMGVFYGPPS ETNFGGALLTGSQSACKAACSAFEQVIQNIADNPLSY >gi|284795522|gb|ADDQ01000027.1| GENE 80 76084 - 76602 776 172 aa, chain + ## HITS:1 COG:lin1142 KEGG:ns NR:ns ## COG: lin1142 COG4577 # Protein_GI_number: 16800211 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; C Energy production and conversion # Function: Carbon dioxide concentrating mechanism/carboxysome shell protein # Organism: Listeria innocua # 2 169 4 165 165 116 45.0 3e-26 MKALGMVEVKGFLGAISVADAALKAADVTLLKAEIINGGLTTVELIGDVAAVQAAVEVGT EVAKELNCLIAHHVISRVDAQTEVILSDSEPKSAPEPMEQVEVIEEEIETPDLEEHTGTR QKLETQRVVDLRKQAYKMNLSSLKKSEIKFANKEALIQAIMAEIERSEDEWN >gi|284795522|gb|ADDQ01000027.1| GENE 81 76593 - 78071 1503 492 aa, chain + ## HITS:1 COG:lin1143 KEGG:ns NR:ns ## COG: lin1143 COG1012 # Protein_GI_number: 16800212 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Listeria innocua # 1 491 1 485 486 639 68.0 0 MELVDKDLRSIQETRNLIRKAKEAQQVLATFSQKQIDAIVQAVSEATFNQREKLAKMANE ETGFGIYEDKIIKNAFASKVVYDEMKDKATVGVIHDDAAKKVTEIAVPVGVIAGLIPSTN PTSTVIYKALISLKAANSIVFSPHPNALKSIIETVEIIQKAAIAAGAPEGCVSVIKTPTM QATSELMKNKETNLILATGGNAMVKAAYSSGTPAIGVGPGNGPAYIERSANVPHAVKQIM DSKTFDNGTICASEQSIIVETVNREAVKEELIKQGAYFLSPAEADKLAKFILRPNGTMNP QIVGRSVQHIASLVGLSIPKDRRLIVAEETHVGLKYPFSREKLAPIIAFYTVENWEAACA LSIEILKGEGAGHTMGIHTENKEVIREFGLRKPVSRLLVNTSGTLGGIGASTNLVPALTL GCGAVGGSSTSDNIGVENLFNLRRVAYGVRDLEEIRQEFGQTSTTSVATSCETTNQEELV NAVVAQVLARLN >gi|284795522|gb|ADDQ01000027.1| GENE 82 78195 - 78485 545 96 aa, chain + ## HITS:1 COG:lin1144 KEGG:ns NR:ns ## COG: lin1144 COG4577 # Protein_GI_number: 16800213 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; C Energy production and conversion # Function: Carbon dioxide concentrating mechanism/carboxysome shell protein # Organism: Listeria innocua # 1 92 1 92 94 113 91.0 8e-26 MSSTNALGMIETRGLVGAVEAADAMVKAANVTLIGKEQVGGGLVTVMVRGDVGAVKAATD AGAAAAERVGELLSVHVIPRPHTEVDAILPHATTEL >gi|284795522|gb|ADDQ01000027.1| GENE 83 78553 - 79116 412 187 aa, chain + ## HITS:1 COG:no KEGG:EF1622 NR:ns ## KEGG: EF1622 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 8 187 1 180 180 305 99.0 4e-82 MTVITEDMLRIKRLKKELEDGTDFVFPVGSFLTPAAKSYLREHRINSSFSSTNPLLSEVH SVKASSQKQEHLSKETIYEIRHLSHLLYLPFLTNEALSTEGWLYFEQQQQWLEKFILEQS LVMEPVILESKVTILTNQQRQWRYSSKEIQLQLDKIILQLKGESQLFGLFQSWATELIST MAEISRN >gi|284795522|gb|ADDQ01000027.1| GENE 84 79129 - 79755 747 208 aa, chain + ## HITS:1 COG:lin1146 KEGG:ns NR:ns ## COG: lin1146 COG4869 # Protein_GI_number: 16800215 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Propanediol utilization protein # Organism: Listeria innocua # 4 208 6 208 213 270 65.0 2e-72 MDSMNEIVEEVVKRIQQQQQNTFEVEASGRHVHLSRQEIDALFGPGYQLTKVKDLSQPGQ FVCKERITVAGPKGLFQNVVILGPERSESQVEVSMTDTRILGINAPVRESGKTEGTPGVT LMNGSAVVTLSHGLIVAKRHIHMTPEDALKNKVSNSQIVQVKVEGTRPLIFDDVVVRISP RFATYMHIDYDEANACGLTKGARGYILK >gi|284795522|gb|ADDQ01000027.1| GENE 85 79770 - 80369 371 199 aa, chain + ## HITS:1 COG:no KEGG:EF1620 NR:ns ## KEGG: EF1620 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 199 1 199 199 361 99.0 9e-99 MNVSEMENLIQQITDRICQQLLSSSYSVALAEAKEAFPEEMFVRFPDVNWVTKEQKLARG LVVKRLTISQVNAIAHLQETDELVKNILAFLFEGKPVLVLTPIPSVSKNSRLKYRLKQTI QENVDMCQQFGLIFYHDSENYAVFQAACQKQLRSLAETKRTYITEKQLIRMTESGVSLSK NAYLTPLAKDYARKHQLLT >gi|284795522|gb|ADDQ01000027.1| GENE 86 80382 - 80645 431 87 aa, chain + ## HITS:1 COG:lin1148 KEGG:ns NR:ns ## COG: lin1148 COG4576 # Protein_GI_number: 16800217 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; C Energy production and conversion # Function: Carbon dioxide concentrating mechanism/carboxysome shell protein # Organism: Listeria innocua # 1 85 1 86 89 94 59.0 3e-20 MLLGKVTGSLWSTRKDEKLNGWKFMMVDILNQEDEKQGFLIAADNAGAGVGDKVLISQGN AARISAEDSNVPIDAMIVGVIDSTEEE >gi|284795522|gb|ADDQ01000027.1| GENE 87 80658 - 81758 1735 366 aa, chain + ## HITS:1 COG:lin1150 KEGG:ns NR:ns ## COG: lin1150 COG3192 # Protein_GI_number: 16800219 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Listeria innocua # 1 360 1 360 373 445 79.0 1e-125 MSINEIIMYIMVLFMIIGGIDKCIGNKLGLGEQFEEGIMAMGSLALSMVGIITLAPVLAN LLSPIVVPVYELLGADPAMFATTLLANDMGGFALAQQLANDPQAGLFAGAILGAMMGPTL VFTIPVALGIIQKDDQQFLATGVLSGIITIPFGLLAGGLTAGMPLSLIIPNLIPIIIVAA LIILGLWLAPKGMIKGFQIFGQGVVIVAIFGLVVGAIQLLLGITVIPGIAPVTEGIEVVG GIALTLAGAFCLVAVITKVFNKPLMKLGKVLGMNEVAAAGMVATLANNIPMFQMLKDMDN RGKIINIAFAVSASFVLGDHLGFTAGVAKEMIFPMIVGKLVGGITAIFVAIFMANRMLGK PETEVK >gi|284795522|gb|ADDQ01000027.1| GENE 88 81771 - 82214 520 147 aa, chain + ## HITS:1 COG:lin1151 KEGG:ns NR:ns ## COG: lin1151 COG4766 # Protein_GI_number: 16800220 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Listeria innocua # 1 147 1 148 148 207 68.0 7e-54 MTELNREMIETLVRQIVTEKLMPTKQVDPSGIMSIKLPEIDVTEDDRLDTGNPADIVYTK DLFSLEESPRLGCGLMVMKDTTFDWTLEYDEIDYIISGQLDILIDGRKISATAGEIILIP KSSKIQFSVTGDARFVYVTYPADWQSQ >gi|284795522|gb|ADDQ01000027.1| GENE 89 82302 - 82730 563 142 aa, chain + ## HITS:1 COG:L158834 KEGG:ns NR:ns ## COG: L158834 COG1832 # Protein_GI_number: 15672137 # Func_class: R General function prediction only # Function: Predicted CoA-binding protein # Organism: Lactococcus lactis # 3 136 4 138 145 160 58.0 8e-40 MTFENPSQNQIFDILKQAKNIAVVGLSNKPDRTSYKIAEILQQHGYRVLPVNPVLKGETV LGETVYGALTEIPEKIDIVDVFRRSEFLPEVAAETLKTEAPVFWAQLGLENEEAANLLLN EGRQVIMNRCIKIELAKMADAE >gi|284795522|gb|ADDQ01000027.1| GENE 90 82935 - 84992 2556 685 aa, chain + ## HITS:1 COG:L0290 KEGG:ns NR:ns ## COG: L0290 COG0187 # Protein_GI_number: 15672961 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Lactococcus lactis # 7 643 6 641 644 962 77.0 0 MAKKINNEYNDASIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGN EINVTIQKDNSICVADSGRGMPTGMHASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGV GASVVNALSKWLEVHIVRDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDDTIF STTNFSYEILAERLRESAFLLKGVKITLTDERGEEPKEEVFHYEEGIKEFVAYLNEEKDT LTPVVYFSGAKEGIEVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKAYNEY ARKVGLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVDNVVG EQMGFYLQENSEMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQS RNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIY TIGAGVGPEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPP LYKVSKGTGKKSVIEYAWTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETR TLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIEQHVQFTLEEDGSILDRSEEDTSAPTGE SLLDAEKTKEAEQTDDTEISLFDIE >gi|284795522|gb|ADDQ01000027.1| GENE 91 85005 - 87467 2654 820 aa, chain + ## HITS:1 COG:SP0855 KEGG:ns NR:ns ## COG: SP0855 COG0188 # Protein_GI_number: 15900740 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Streptococcus pneumoniae TIGR4 # 7 817 4 823 823 966 60.0 0 MEKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDK GFRKSAKSVGNIMGNYHPHGDISIYDAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMR YTEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATE IPTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVI LRAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQ IVVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVI INRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAE AIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQYGNP RLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEGDFLL YAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAVYPYK ELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLL DVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVIVTQR GGVKRMLAQELTQLGRAKRGLMVLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSK NYPISERTSNGSFVIDEQKDGQVMEVHEMHSAVIEEEQTN >gi|284795522|gb|ADDQ01000027.1| GENE 92 87757 - 90003 2461 748 aa, chain + ## HITS:1 COG:lin1443 KEGG:ns NR:ns ## COG: lin1443 COG1882 # Protein_GI_number: 16800511 # Func_class: C Energy production and conversion # Function: Pyruvate-formate lyase # Organism: Listeria innocua # 2 748 3 743 743 953 61.0 0 MKQWEGFKGDKWRTSVDTRDFIQNNYTEYKGDDSFLEPIAPSTDKLWTKLQELFEIQHEK NGVYDMDSDIPATITSHEPGYLIKEEEKIVGLQTDVPLKQAFMPFGGIKMANNALVSNGY ETDEEMTKIFTEYRKTHNQGVFDAYTAEMRLARKNKIITGLPDAYGRGRIIGDYRRIALY GIDYLMEQKKKDHDNTGNKEMTDDVIRLREEISEQYRALNDLKQMAASYGFDISRPAANA QEAIQWLYFGYLGAIKSQNGAAMSIGRISAFLDIYIQRDLEAGLITEFEAQEMIDHLIMK LRMVKFARTPEYNQLFSGYPIWATLSIAGMGIDGRSLVTKNDFRILHTLTNMGPSPEPNL TVLYSSHLPEGFRTYAAKIAKESSSIQFENDDLLRENWGSDDCAIACCVSATVMGKDMQF FGARANLAKAVLYAINGGVDEKTKMQVAPKYRPMTGDKLDYHEFMERYKDILDWLAELYV NTLNIIHYMHDKYAYEAPQLALMDTDLQRTFATGIAGISHATDSIMAIKHGEVEVIRDED GMAIDYVPTKEFPTYGNDNEEADAMANWILDYFMTQIKRQHTYRNSKPTTSLLTITSNVV YGKATGNTPDGRRAGKPLAPGANPSYQDGKFLGEKNGLLASLNSTARLEYTIALDGISNT QTINPNGLGKDDDTRINNLRNVLDGYFDKGGYHLNVNVFTNELLLDAQAHPEKYPNLTIR VSGYAVKFRDLTPEQQADVISRTSHDRL >gi|284795522|gb|ADDQ01000027.1| GENE 93 90080 - 90844 746 254 aa, chain + ## HITS:1 COG:SP1976 KEGG:ns NR:ns ## COG: SP1976 COG1180 # Protein_GI_number: 15901799 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyruvate-formate lyase-activating enzyme # Organism: Streptococcus pneumoniae TIGR4 # 5 254 11 261 264 355 64.0 3e-98 MTTPVTGRIHSTENFGTVDGPGVRFIVFTQGCRMRCQFCHNPDTWKIGSGGRVVTTDEVL EEALRFRSYWGEKGGITVSGGEPLLQMDFLIDLFKKAKAQGIHTTLDTCGKPFTREEPFI SQFDELMKYTDLLLFDIKHIDNEQHKLLTTQSNDNILEMATYLSEIDKPVWIRHVLVPQR SDYDEYLIRLDAFIKTLNNVDKVEVLPYHTMGKYKWEELGIPYPLEGIEPPKNDRVENAK KLLHVEDYQGYLAR >gi|284795522|gb|ADDQ01000027.1| GENE 94 90940 - 91866 1298 308 aa, chain + ## HITS:1 COG:SP1534 KEGG:ns NR:ns ## COG: SP1534 COG1227 # Protein_GI_number: 15901378 # Func_class: C Energy production and conversion # Function: Inorganic pyrophosphatase/exopolyphosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 308 1 310 311 377 66.0 1e-104 MSKILVFGHQNPDTDAIGAAISFAYLQKELGKETEAVALGTPSEETQYALDYFNIEAPRV VTEAASETNQVMLVDHNEFQQSISDIAEVNILAVVDHHRIANFETADPLYYRAEPVGCTS TIIYKMFKENNVTIPAQIAGMMVSAIISDTLLFKSPTCTQEDIDAAHALADIAEINLEGY GLDLLKAGTNLSDKSAEVLLDLDAKSFPMNGKTVRVAQVNTVDLAEVLDRQAELEAAMAA ENAANNYDLFVLIITNILDSDSELLAIGAEQAKIEAAFNVTLVNNRAFLPGVVSRKKQVV PQLTEVFN >gi|284795522|gb|ADDQ01000027.1| GENE 95 91938 - 92399 369 153 aa, chain + ## HITS:1 COG:no KEGG:EF1610 NR:ns ## KEGG: EF1610 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 129 1 129 294 246 99.0 2e-64 MNDLAIYYHSPQQTKQYNHLLNQSLFFPLVTFMYEHREERIILRQLKAAFATEAKLEQFL SEMIDCQLIIRENRQYRLNFPIYTAAEVASLTLAEDELPKFKGTVTEQLFWLAESFWPQV FPEEEDYFFWRERWPLILSKTKIGVGTTIYNYA >gi|284795522|gb|ADDQ01000027.1| GENE 96 92425 - 92823 379 132 aa, chain + ## HITS:1 COG:no KEGG:EF1610 NR:ns ## KEGG: EF1610 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 132 163 294 294 241 100.0 5e-63 MPRYFDYLGKEQSLPEAFSALYDLLGDVNPEYYLSQARRVIKQALRGRKVSTVPNIFQES LHLTQVITIDQDHLKLLLPVATEQAEPLEAQSDILAFYYEKIANRSAIERLVFMQQLIEQ LGTNSLSYLRIN >gi|284795522|gb|ADDQ01000027.1| GENE 97 92882 - 93433 630 183 aa, chain - ## HITS:1 COG:SA1727 KEGG:ns NR:ns ## COG: SA1727 COG4843 # Protein_GI_number: 15927485 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 7 177 11 179 200 174 52.0 7e-44 MVVDLKMLAMIFIINFAYITLNTIRFMLTMKGYRVIAPLVSMAEITIYVLGLSMVLNRLD NPLNLLVYALGYAVGISVGIKIEDYLALGYIMVSVILPSTTEQFHLPETLREHGYGVTQS VAYGREGERMVLEILSPRKNERTLYKLINQLEPRAFIISYEPKFISGGFWTKKVRKRNDA ISH >gi|284795522|gb|ADDQ01000027.1| GENE 98 93614 - 95074 1346 486 aa, chain + ## HITS:1 COG:L186875 KEGG:ns NR:ns ## COG: L186875 COG1502 # Protein_GI_number: 15673156 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Lactococcus lactis # 11 486 18 487 487 565 56.0 1e-161 MKIFVWILLFLLVINVIAALITVFRKPRSISSVLAWMMTLIFLPGIGFIIYLFCGRGIDG QEVFKLSDDEKQMVQRIKEKVDIDNKKAGRDKRYDLLYDAKVLNRYFRNMDASPLAKRNS LQLFTDGQEKFQALFEDIRAAKETVHVEYYAFFNDTIGNQFLDVLIEKLHEGVEVYLIYD PWGSPGANKKFFARYVDAGGKVAPFITSRDMIRKTRLNYHLHRKIVVIDGKIGWTGGFNV GDQYLNVTEKFGYWRDTHIRLVGTAVFSLQEIFIMDWNASVKYPEERMTYHEKYFKLPED HEVEHLSLQVVSDGPDSEEEILKSGFVRMIFSAEKSVWIQTPYLIPDDSMINALLVAVRS GVDVRIMIPCMPDHPFIYRATQYYANYLHKRGIKIYIYDSGFIHAKTMVIDDELAMVGTT NQDIRSYSLNFEVSTFIYNPDIAWMLAQVFEEDIEKSVLLTDEIIKKQGYWLRFKQNFSR LLSPVL >gi|284795522|gb|ADDQ01000027.1| GENE 99 95357 - 96526 1068 389 aa, chain + ## HITS:1 COG:BH0296_2 KEGG:ns NR:ns ## COG: BH0296_2 COG1263 # Protein_GI_number: 15612859 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Bacillus halodurans # 98 387 2 286 368 249 48.0 9e-66 MDYQAIAKEILKDVGGKDNIVDVTHCYTRLRFVLKDTKQANKEALLQTEGVISVVESGGQ YQVVLGNKVAHVYNALEPLLAQQLTTKTSTKEKNSLGNRILNTVAAIFTPVVPAIAASGM LKGILAIAVMVANNFYQVDLKPLNTYIILSAASDALFYFMPVILGYSAAKVFKTNEYIAM VIGATLCYPTIVSLMTEESAVTLFGLHVTKANYVSTVIPIILAIFMLAYVQRFLEKVILE VLKIIMVPTLSLLLMIPATLLLFGPIGIYLGDGVNWLYYYIMNLSPILLGGFIGGIWCVL VIFGAHRGLVPIGINDVARTGRQNLLAFAGAANFSQAGAAFGVFVRTKNKDLKAVAASAT VTALFGITEPAIYGANLRLKKPMIYAVAG >gi|284795522|gb|ADDQ01000027.1| GENE 100 96510 - 97241 607 243 aa, chain + ## HITS:1 COG:BH0296_3 KEGG:ns NR:ns ## COG: BH0296_3 COG2190 # Protein_GI_number: 15612859 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIA components # Organism: Bacillus halodurans # 91 231 13 153 161 133 43.0 3e-31 MRWLASGAAGGALMGWGGSYGTAFANQGLLTIPVYAEAGTKAFICYLLGCGIAFFGAFLL TIFLGFNDLPLDESRQEPGFKTEAGTVKEKQPIQAPVQGQLVSLDQINDEVFASQQMGKT LAIYPTEEQIVSPGNGQVTALYPTHHAIGLKLDNGAEILLHIGINTVELKGRAFETFVKV GERVRLGQKLLSFDKQIIQAAGYDPTVLVIVTNTAEMAVIETTKQTEITPQTNLFFMQVK EQN >gi|284795522|gb|ADDQ01000027.1| GENE 101 97241 - 98650 1430 469 aa, chain + ## HITS:1 COG:CAP0010 KEGG:ns NR:ns ## COG: CAP0010 COG2723 # Protein_GI_number: 15004715 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Clostridium acetobutylicum # 2 465 6 466 469 417 45.0 1e-116 MVKQFKNDFLWGASSSAFQIEGAWNEDGKGLTVADYNSFKKSAVQADTKVASDFYHRFKE DIALMKELGLKTYRFSLSWARIIPTGDGEINQAGIDFYNAVIDTLLENDILPFVTLYHFD LPFALVENYNGWADRRCVSAFQRYAQVCYQAFGDRVKNWQVTNEQNLMIRVDERMNMYDV VPENTEKIRAQMDYHMFVAHALATNDCHQLVAGGKVGPSVSSTMTYPSSNKPEDVWAARM NDNFKTNYALEMYCFGEYPGYYQEYLTKCDIYPETQPEDQAILKAAKPDFIALNYYRTLV ASYLPTDEQHPLGTKEKDIDFDLYGYFKIEKNQHLKTSKYGAQIDPTGLRLVLNDYYRQY RLPLIITENGLGTPDHLTEDGKIHDDYRIAYLHDHIAACHAAISDGVELFGYCPWSVMDI LSSHQGFKKRYGFIYVNREDHELKDLRRIKKDSFYWYQSVIKNNGLSEE >gi|284795522|gb|ADDQ01000027.1| GENE 102 98760 - 98843 123 27 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNNYDLWKWAAGKRTEKNKNETYSAKN >gi|284795522|gb|ADDQ01000027.1| GENE 103 98981 - 99961 956 326 aa, chain - ## HITS:1 COG:SP1725 KEGG:ns NR:ns ## COG: SP1725 COG1609 # Protein_GI_number: 15901558 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 1 320 1 315 321 335 54.0 5e-92 MVVKLTDVAKLAGVSPTTVSRVINNYGYLSQKTIDKVHQAMEELNYQPNGLARSLQGKST QLIGLVFPSVSHPFFGELIETLERKLFVQGYKVILCDSEKDPEKERAYLRMLAANKVDGV ITGSHNLAINEYENVSLPIVSFDRFLAPGIPIVSSQNFQGGQKATEALFASGAQKIAIIT GANNTGAPSDYRLAGYKQTMEKYGAEKTILQIDNGTSTTLKNLEIERLLQNKTVDGIFCT DDLTAITVMNIAQKLKISIPEELKVIGYDGTKLIKRIAPQLSTIVQPIDEMCDVMIDLLL RRMKDPDVALEENYPIPIQLSLSESC >gi|284795522|gb|ADDQ01000027.1| GENE 104 99980 - 101452 1255 490 aa, chain - ## HITS:1 COG:SP1724 KEGG:ns NR:ns ## COG: SP1724 COG1621 # Protein_GI_number: 15901557 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-fructosidases (levanase/invertase) # Organism: Streptococcus pneumoniae TIGR4 # 7 486 2 478 484 455 46.0 1e-128 MSSIMNQWTDELRYAPYSSWTSAHLENLTSIIAQSSWRFKYHIQPQTGLLNDPNGFSYFN NQWHLFYQAFPFGSVHGLKSWAHLTSSDLIHWDYEGIALYPDSEYDSHGVYSGSALPIDN QLCLFYTGNVRDQAWQRFAYQNIAWLNSLGAITKESTPFLPIDPNYSSHFRDPMVFPYQE GLVLLIGASDLNGQGKIVVYFSKDRNVHNFHQLGELTFTDQELGYMVECPNLVFIDGQPV LLFCPQGLSPSVKSYQNIYPNMYTLAETFDLENLSLVQAGPFENLDEGFDVYATQAFNAP DGRALAVSWIGLPEITYPSDVEGWANGLSLVKELTIHNGKLFQYPVSETEMLRQSATTLS NGCHFLSTASFELEVDIPKNEIAFIRLLANETGSKGLLITIDTIHGKITLDRTFAGQSFA EKYGTIRETKIRKNKSVQLTIFVDCSVAEIYVNKGEKTMTGRFFPDKAQRYLHLSKTAKA CFYELENTNN >gi|284795522|gb|ADDQ01000027.1| GENE 105 101683 - 103356 1560 557 aa, chain + ## HITS:1 COG:BH3868 KEGG:ns NR:ns ## COG: BH3868 COG0366 # Protein_GI_number: 15616430 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Bacillus halodurans # 1 510 1 507 553 434 43.0 1e-121 MNRNWWQKEVAYQIYPRSFSDSNNDGIGDLQGIIQKMDYLENLGITLIWLSPMYPSPMAD NGYDISDYYGISSDFGTMADFDELIEEAKKRNIKVILDLVVNHTSDEHAWFQDVLKNPQS RFRDFYIIKEGREVPTNWRSNFGGSVWEKLPGEDAYYFHAFHKKQPDLNWENPELRKEIY QMIRFWLNKGIAGFRVDAINFIKKDLTWTNLPADGADQLAKVTKASRNMPGMSDFLNELK EKAFAGFDIVTVAEAAGVNYPNLSEFIGETGYFDMIFDFKWADLDVKSGSEWFYRINWSW NDLRTLIFKQQEAMQEAGWSANFIENHDQPRATTKYLKEQAQQPNAVKTFGAMYFFLRGT PFIYQGQELGMTNFERGSIDEFDDISSIDQYYRAIKEGFTPKEALSLVNLRSRDNARTPF PWNDSMYGGFSSVKPWLGMADNYKEINAEAEIKNSQSIFHFYKRMIAFRQKSPYTDILLY GTFEGLSNLPDNVIAYKRKLNEKTIYAFFNFGEAVPIPHYLVNGTVIFDTQSEEREQLVQ QGTLLKSYQGLLITINE >gi|284795522|gb|ADDQ01000027.1| GENE 106 103373 - 105301 1905 642 aa, chain + ## HITS:1 COG:SPy1815_2 KEGG:ns NR:ns ## COG: SPy1815_2 COG1263 # Protein_GI_number: 15675645 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Streptococcus pyogenes M1 GAS # 103 456 13 360 385 239 38.0 1e-62 MAENYQQAAKDIIQLIGMDNIISVTHCQTRLRFILKDHEQVDGKQLEKIDLVKGVFYNGG QYQVILGTGIVTKVYDEIEKLGINVVSKAEQTAILKNNETGMRKTMRILSEIFIPIVPVI AATGLFLGLKGVIFNDTFLQLFGASVANIPESFQQIVSVITDTVFAFLPALIVWSTFKAF NATPVIGIVIGLMMVSPILPNAYAVATPDSGVKAIMAFGFIPVVGAQGSVLSAIAAGIIG AKIELFFRKKMPNILDQIFTPFMTMLITFLIMILGIGPILHTVELGMVDVVQWLIGLPLG LGGFVIGASYPLMVLIGIHHTLTMVETSLLANTGFNALITICAMYGFANVGSCLAFAKKA QDSKVKSTAIGSMLSQLFGVSEPVLFGLLIRWNLKPLLCVLFTSGLGGAILAIFHIQSNS YGLAVIPSFLMYIYSAHQLVIYLLVALLSVGVCYALTSLFAIPQEVLISDKVIEEEEREV FEMQHNTLDEQLFSPVTGYAMNLTAVNDPVFSSEMMGKGLAIMPTANKVYAPADGLLNLV AETGHAYGIQTDAGAEVLIHIGIDTVTLGQEVFQTQVTQGHRVKKGDLLGTFDRKAIKEA GLDSTVMVIITNTSSYLSVEPMMSDHNEITPEQIILNLNTPN >gi|284795522|gb|ADDQ01000027.1| GENE 107 105466 - 105528 118 20 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFDLLALLTGTSTYGNVPHV >gi|284795522|gb|ADDQ01000027.1| GENE 108 105610 - 106455 862 281 aa, chain + ## HITS:1 COG:no KEGG:EF1599 NR:ns ## KEGG: EF1599 # Name: not_defined # Def: transcriptional regulator Cro/CI family protein # Organism: E.faecalis # Pathway: not_defined # 1 281 1 281 281 491 100.0 1e-137 MKVAGDKIKQARKLKKITQSELANGICTQATISNIENRNLCDSLDIFSSICLRLDLEVEE CMMISEEKKIENLLNKVEDLSLRLFHLEAYNLLQEVPEGLILSNNELTTKLLYYKGITCL LGKKDKAEALFYLYRGAEIDRKVNIYNILSLNALGTLYELEKDMRKAQVYYEKSLQELEQ FKLECSLERCRIYYNSAKFYSEMKDYQKSVILSEKGIQICRDKHSIYLLDYLLYEKAFNK QMLGEDTADDYRQAYYFTQFFGNTEVLQYIEKDMKAFNISY >gi|284795522|gb|ADDQ01000027.1| GENE 109 106588 - 108021 1200 477 aa, chain + ## HITS:1 COG:lin0597 KEGG:ns NR:ns ## COG: lin0597 COG0415 # Protein_GI_number: 16799672 # Func_class: L Replication, recombination and repair # Function: Deoxyribodipyrimidine photolyase # Organism: Listeria innocua # 1 466 1 461 467 527 56.0 1e-149 MKRVMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQESANHNAFFASLASLK ERIDQEAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFEENNIQ SFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSACLFPEE EAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLSTFLRTG ELSIRTIWQELASVPSSLSKETFKKELAWRDFYNMIYSAFPQQKEEAIQEKFRYIQWTND PEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKM LIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKY IHQPNIMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKEIHQEMNNPRFK >gi|284795522|gb|ADDQ01000027.1| GENE 110 108233 - 109669 1602 478 aa, chain - ## HITS:1 COG:BS_katA KEGG:ns NR:ns ## COG: BS_katA COG0753 # Protein_GI_number: 16077947 # Func_class: P Inorganic ion transport and metabolism # Function: Catalase # Organism: Bacillus subtilis # 1 474 1 475 483 660 67.0 0 MKNQHLTTSQGSPVGDNQNSLTAGEFGPVLIQDVHLLEKLAHFNRERVPERVVHAKGAGA HGIFKVSQSMAQYTKADFLSEVGKETPLFARFSTVAGELGSSDTLRDPRGFALKFYTDEG NYDLVGNNTPIFFIRDAIKFPDFIHSQKRNPRTHLKSPEAVWDFWSHSPESLHQVTILMS DRGIPLSFRHMHGFGSHTFKWVNAAGEVFFVKYHFKTNQGIKNLESQLAEEIAGKNPDFH IEDLHNAIENQEFPSWTLSVQIIPYADALTMKETLFDVTKTVSQKEYPLIEVGTMTLNRN PENYFAEVEQVTFSPGNFVPGIEASPDKLLQGRLFAYGDAHRHRVGANSHQLPINQAKAP VNNYQKDGNMRFNNGNSEINYEPNSYTETPKEDPKAKISSFEVEGNVGNYSYNQDHFTQA NALYNLLPSEEKENLINNIAASLGQVKNQEIIARQIDLFTRVNPEYGARVAQAINQQA >gi|284795522|gb|ADDQ01000027.1| GENE 111 109972 - 110982 1248 336 aa, chain - ## HITS:1 COG:no KEGG:EF1596 NR:ns ## KEGG: EF1596 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 336 1 336 336 529 99.0 1e-149 MLKRKVGIVAGVFCSALLLTGCGKSAKDEFIQGIGNQNAQESGVWDFSMSISDMKFSQED GAQTNPMIGMLITQIKDASLFGKIQVDAKKEKAFNLEMKLKAMGMDVPISLVGSLDNEGK EPKLYLATDMMEYIVAVADSMTDGAIDSSQLDTEKLKGKYIDLLAMNEESTKEWQDTIKE YQESEKERKQSAKEYKEFLEGLDKDTFEKKGDTITHTFTKKELQKLIKITTETSEKGKEQ DPFEKVKDVSAKVSVNTKENKTNMLINVKPQQDKNVDMGLESLSSKISITQKAKKASISM PKKENILSEQEVEKIFSDSTSMTGLSTEDTTVAINQ >gi|284795522|gb|ADDQ01000027.1| GENE 112 111122 - 111547 434 141 aa, chain - ## HITS:1 COG:SP0740 KEGG:ns NR:ns ## COG: SP0740 COG0494 # Protein_GI_number: 15900635 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Streptococcus pneumoniae TIGR4 # 1 138 1 142 151 89 38.0 2e-18 MNRNFEVELTTLCMIRNQKNEILVQERQKKDWPGWTFPGGHVEKNEGMETAMVRELLEET GLVLKPQLVGVAEWLNDCSGARELATLFIAETADELPEETEQPLFWVTEKELREGPLAGS LAELFPVFFGEKQFYFKNNTA >gi|284795522|gb|ADDQ01000027.1| GENE 113 111636 - 113414 234 592 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 336 574 6 251 329 94 28 3e-18 MARNTFDVDEALEKEFNWSHYKRLGVYIKPYKKAVFKTLFVIILANLASMLGPYFTKIAI DQVIPQKNLSLLLILGAIFLFSLVIIGWCMRYRIYAITEIGQDILKDMRFSIFEHLQKLP FSYFDSRPHGKILIRVVNYINTLSDLLSNGLINLISDLFNVIITLIFMLFIDVKLTLYSL LLLPVLFVMVLFIQGKQRKAYQELSNKQSNLNAYIHESISGIKITQSFAREDKNFQIFNE VSEEYRQSFMKAVRVQYLLWPAVQNISVITTCFIYFVGIRQLGVSVTTGTLIAFIGYINN FWNPVINIGNFYNSLITATAYLERIFETMDVVPEIQDAPHAIALPPIKGTVDFQHVYFRY EEGKNILTDVSFHIEPGQTIALVGPTGAGKTTIINLLSRFYDVNEGAVKIDGYDVRDVTL RSLRKQMGVMLQDTFIFSGTIIENIRYGNLAATEEEVIQAAKIVRAHDFIKDLKDGYETV VEERGSTLSAGQRQLISFARALLADPKILILDEATSSIDTKTEELLQEGLQQLLKGRTSF IIAHRLSTIKNSDKIFYIDGGRIVEEGSHDQLMAKHALYHHLYQSQYDLLKS >gi|284795522|gb|ADDQ01000027.1| GENE 114 113407 - 115155 225 582 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 295 557 247 507 563 91 27 4e-17 MNSFEWIWQYAKKNKNKLLLAVIFVVINAILIVIIPLLSGRIVDQVINQGKTEELVPILG IMIGVTVIRTVVRYSYQVLFESVGQSALFDLRKDMYIKLQELDFDFFNHTRVGDIMARMT GDTDAIRHFVSWVTYNLLECILWFIAAVIVMGTINWQLMLALILITPLIFLLTQKMSKES HPVFFEIRESFSRLNSMVEENIGGNRVVKAFSQEPYEIEKFNKHNEDYKKWNMASADVSK KYLPWLDGFAGSLNVIALVLGGLFVIQGRMTIGDLVAFNGFLWMLNMPMRMSGWLINDVQ RFTASSIKIRQLLATKPKIPIAREKEAEPIQGYVTFDHVSFHFSDDPETPILSDVSFSAK PGETIGILGETGSGKTTLVNLIARFYDPTKGTVYIDGKDAKSYSVRKLRENISMVMQDVF LFSNTIEDNIAFGNTLANLEQVQMMAEIADAHSFISRMPEGYATIVGERGVGLSGGQKQR ISLARALTKDPAILILDDTTSAVDMETESKIQKELGRLTEKKTTFIIAHRISSVREANLI LMMEKGRVVESGTHSELVEQKGKYFDVYQKQLGLTKEGESRG >gi|284795522|gb|ADDQ01000027.1| GENE 115 115292 - 116110 830 272 aa, chain + ## HITS:1 COG:lin0157 KEGG:ns NR:ns ## COG: lin0157 COG2207 # Protein_GI_number: 16799234 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Listeria innocua # 5 271 5 271 277 220 43.0 2e-57 MNYTNSRTFNPEILYAFDPWNEETHPYNCHHHEFLEISILLEGESEYIVQGQQYHATAGT VFLFNPRTEHGEQQKVGTYSHQLHIGISNLYLEGLARNVFPNKSALLDLSHLHGAFLEKA WQIVHELNHQEVESALQIKALVIELLVYILRSLAVDQENKIETRLSKTEKRKRNLVNHTI YYLETHHDEEITLEQLAEMLYVTPTYLSKTFKAATGVGPINYLIQIRLNHAKELLKNDSL SVKEVAKTVGYEDAYHFSKLFKKYYGKSPSQF >gi|284795522|gb|ADDQ01000027.1| GENE 116 116165 - 116692 567 175 aa, chain - ## HITS:1 COG:BS_paiA KEGG:ns NR:ns ## COG: BS_paiA COG0454 # Protein_GI_number: 16080268 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 1 171 1 171 172 154 45.0 9e-38 MSVFIRECTVADVPELEAICQETFADTYGDGENEEDLQAHYERKFSPAVLESEILHKDSQ YFFAFYNNELAGYVKLNHGDAQITYQHPQALQVERIYIRKSFKRLGLGKHLITKAIELAE EAEKETVWLGVWEHNHPAQKFYQSLGFVKTDEHDFYMGNERHTDYTMTKQLKEST >gi|284795522|gb|ADDQ01000027.1| GENE 117 116712 - 117182 314 156 aa, chain - ## HITS:1 COG:SP0640 KEGG:ns NR:ns ## COG: SP0640 COG0456 # Protein_GI_number: 15900546 # Func_class: R General function prediction only # Function: Acetyltransferases # Organism: Streptococcus pneumoniae TIGR4 # 80 155 5 80 81 79 48.0 3e-15 MKEFTIIREKNADKKTQAAQEVLFNLPEWFGLEKETRKYIDIASTLPMWVAKDVENKTLG FITLSETSKDTVEIHCMAVKKRYHRKGIGKLLIESVETHSKNNYFFIQVKTVDEGNYSVY DHTIRFYESLGFKRLEVFPTLWDAWNPCLILIKQLI >gi|284795522|gb|ADDQ01000027.1| GENE 118 117389 - 117997 679 202 aa, chain + ## HITS:1 COG:L167097 KEGG:ns NR:ns ## COG: L167097 COG1051 # Protein_GI_number: 15672146 # Func_class: F Nucleotide transport and metabolism # Function: ADP-ribose pyrophosphatase # Organism: Lactococcus lactis # 1 192 1 188 200 139 44.0 3e-33 MDYLNTYKRLLALADAGLFYGKDAFDQERYQELRELTLQLISATGHEATVLPDLEKILTK EEGYPTPKVDVRGLIKKENRFLLVEDLRTKEWSLPGGYAEIGCSPKENIEKEVLEETGLV VTAKELLAVYDTDKRKDIPQLFQYYKMIFSCEILENHPFEKNIETSNCAYFSLDNLPPLS IKRTTKEQLMALMNQTTGALSD >gi|284795522|gb|ADDQ01000027.1| GENE 119 118048 - 119388 1808 446 aa, chain - ## HITS:1 COG:SPy1150 KEGG:ns NR:ns ## COG: SPy1150 COG0446 # Protein_GI_number: 15675127 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Streptococcus pyogenes M1 GAS # 2 442 3 454 456 368 43.0 1e-101 MKVVVVGCTHAGTSAVKSILANHPEAEVTVYERNDNISFLSCGIALYVGGVVKNAADLFY SNPEELASLGATVKMEHNVEEINVDDKTVTAKNLQTGATETVSYDKLVMTTGSWPIIPPI PGIDAENILLCKNYSQANVIIEKAKDAKRVVVVGGGYIGIELVEAFVESGKEVTLVDGLD RILNKYLDKPFTDVLEKELVDRGVNLALGENVQQFVADEQGKVAKVITPSQEFEADMVIM CVGFRPNTELLKDKVDMLPNGAIEVNEYMQTSNPDIFAAGDSAVVHYNPSQTKNYIPLAT NAVRQGMLVGRNLTEQKLAYRGTQGTSGLYLFGWKIGSTGVTKESAKLNGLDVEATVFED NYRPEFMPTTEKVLMELVYEKGTQRIVGGQLMSKYDITQSANTLSLAVQNKMTVEDLAIS DFFFQPHFDRPWNYLNLLAQAALENM >gi|284795522|gb|ADDQ01000027.1| GENE 120 119686 - 120129 550 147 aa, chain - ## HITS:1 COG:lin1791 KEGG:ns NR:ns ## COG: lin1791 COG0735 # Protein_GI_number: 16800859 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Listeria innocua # 1 146 3 148 148 207 63.0 4e-54 MDNVLVKNALAELKEANIRITPQRYAILEYLIENHTHPTADEIYRALEDHFPNMSVATVY NNLRLFTEIGFVQEMSYGDASSRFDFSSKKHYHVICQKCGKIVDFHYPGLEDVEMAASKL TGFEINEHRLELYGLCPDCQQAQQENV >gi|284795522|gb|ADDQ01000027.1| GENE 121 120268 - 121200 1052 310 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP6-BS73] # 8 308 6 306 308 409 67 1e-113 MTKGYVKSVTELIGQSPVVKLKRMVPEGAADVFVKLEFFNPGGSVKDRIALSMIQQAEAD GRLKPGQTIIEPTSGNTGIGLAMVGAALGYPVKIVMPDTMSIERRKLMQAYGADLLLTPG AEGMKGAIAKATALAEEHGYFMPLQFNNPANPMVHEQKTGKEIVDVFGKRGLDAFVSGVG TGGTVTGVGHELKRIFPDIEIVAVEPTESPVLEGGEPGPHKIQGIGAGFVPDVLDTTVYQ KVAAVSSEDALETARLMGPKEGILVGISAGAAIKAAIDLAVELGAGKRVLALVPDNGERY LSTALYEFPE >gi|284795522|gb|ADDQ01000027.1| GENE 122 121429 - 122289 1093 286 aa, chain - ## HITS:1 COG:lin2838_1 KEGG:ns NR:ns ## COG: lin2838_1 COG1705 # Protein_GI_number: 16801898 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Listeria innocua # 52 205 154 308 340 147 60.0 2e-35 MSEQLTRSSKHIQKALKKQKAYKRATAVAGTSMILAPVVGAAVPAQAESSQQAFINEIGN SAAAVANSNDMYASVMIAQALLESSYGSSGLASAPNYNLFGVKGSYNGQSVYMPTKEYLD GQWVTVTAAFRSYNSYAESFQDHANVIRSTAFGDTYHYSGVWKSNTSSYRDATAALAGSY ATDPGYAEKLNWLIEAYNLTQYDWGAPVAQTTSYSDTTGTVDTTIDTAASATATAETVAS QSYTVANGDTLWDIAARFGTTVDNLMSLNGLTLDSVLSVGQTIQIG >gi|284795522|gb|ADDQ01000027.1| GENE 123 122644 - 123834 1138 396 aa, chain + ## HITS:1 COG:CAC0560 KEGG:ns NR:ns ## COG: CAC0560 COG0477 # Protein_GI_number: 15893850 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Clostridium acetobutylicum # 3 394 43 430 441 285 42.0 1e-76 MKKQQSGLTNQVTFLLALTCGVVVANMYYIQPIGTQIAQAFQVSIGSIGFVTMLTQLGYA LGLLFLVPLGDVVDRRKLIIRVAALSSLSLSAAFFAPSFLLFALSSFFIGLLSIVAQIII PYAAVMAGPANRGKVTGRMLGGLLTGILLSRTISGFIASAASWRAVYLIAVIFVLALVVL LQLKLPKTVIHTQTSNRLTYSGSLKSLPKLIKSQPLLREATVNGFFMFATFSIFWSTLIF FVSSPAYYWGPKEVGILAIFGLSGAFVAPIIGRLSDYYPERKIVLIGLLMQFGSFILLFL GGTHVVLLILAIIVLDIGTQFGQVANQTRVQNLGEEASNRNNTVFMFFYFIGGSLGSLIG TLMWQNYGWSGVTLTGIGFQLFALFFHFMLFAPKKK >gi|284795522|gb|ADDQ01000027.1| GENE 124 123886 - 125880 2599 664 aa, chain - ## HITS:1 COG:SPy1676 KEGG:ns NR:ns ## COG: SPy1676 COG0021 # Protein_GI_number: 15675539 # Func_class: G Carbohydrate transport and metabolism # Function: Transketolase # Organism: Streptococcus pyogenes M1 GAS # 2 664 53 711 711 926 70.0 0 MFDKTDQLGVNTIRTLSIEAVQKANSGHPGLPMGAAPMAYALWTKHLKVNPTTSRNWVDR DRFVLSAGHGSAMLYSLLHLSGYNVTIDDLKNFRQWDSKTPGHPEVHHTDGVEATTGPLG QGIAMAVGMAMAEAHLAATYNRDSFPIMDHYTYAICGDGDLMEGVSQEASSMAGHMKLGK LIVLYDSNDISLDGPTSKAFTENVGARYEAYGWQHILVKDGNDLDEIEAAIEAAKAETDK PTLIEVKTVIGYGAPKEGTSSVHGAPIGEEGITAAKAVYGWEYPDFTVPEEVAARFKETM IDEGQKAEAAWNEMFKNYEHAHPELAKQFKEAFANQLPEGWEQELPKYELGTSAASRVTS KETIQAISKVVPSFWGGSADLSASNNTMVAAEKDFEPGQYEGRNIWFGVREFAMAAAMNG IQLHGGSHVYGGTFFVFTDYLRPAIRLAALQKVPVTYVLTHDSVAVGEDGPTHEPIEQLA SVRCIPNVHVIRPADGNETVAAWRIAMTSTETPTILVLSRQNLPVLEGTLEHASDSVQKG AYVLSPQKGEQPAGILIATGSEVNLAVEAQAKLAEEGIDVSVVSMPSFDLFEKQSAEYKE SVLPKAVTKRVAIEAAASFGWERYVGTEGKTITIDHFGASAPGGLVLEKFGFTPENVVNT YKSL >gi|284795522|gb|ADDQ01000027.1| GENE 125 125952 - 126194 420 80 aa, chain - ## HITS:1 COG:SP1473 KEGG:ns NR:ns ## COG: SP1473 COG4224 # Protein_GI_number: 15901323 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 2 79 1 78 85 77 65.0 5e-15 MLSKEKIARINELANKAKVEELSAKEKVEQQELRKEYLEAFRGGMRHHIEGMKVVDQEGT DVTPEKLKQIQREKGLHNRK >gi|284795522|gb|ADDQ01000027.1| GENE 126 126345 - 126965 787 206 aa, chain + ## HITS:1 COG:lin1340 KEGG:ns NR:ns ## COG: lin1340 COG1974 # Protein_GI_number: 16800408 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Listeria innocua # 4 204 2 202 204 246 62.0 3e-65 MAKRTETRQLEVLKYIYEQVELKGYPPTVREIGKAVDLSSTSTVHGHLARLEKKGLILRD PTKPRAIELTPEGLEKIGIQPTTIPMLGVVTAGEPILAVEEASDFFPLPPDLRTEENALF MLTIRGESMINAGILDGDQVIVRKQSNANNGDIVIAMTDEDEATCKRFFREVDHIRLQPE NDALAPILLDNVTILGKVVGLYRNHI >gi|284795522|gb|ADDQ01000027.1| GENE 127 126979 - 128148 1166 389 aa, chain - ## HITS:1 COG:lin0933 KEGG:ns NR:ns ## COG: lin0933 COG1600 # Protein_GI_number: 16800004 # Func_class: C Energy production and conversion # Function: Uncharacterized Fe-S protein # Organism: Listeria innocua # 4 371 13 374 380 399 53.0 1e-111 MPTLKEKIIQESQRLGIDKIGFTHAEPFIELEDSLHEQRERGYNSGFEHQNVEERIYPEK TFEHPKSIISIALAYPTKAQEKMPRDEKRGQFARASWGIDYHHILQDRLQKLIAFIEEQA ATEAEKEHWRFRPQVDTGEYVDTAVAQRAGLGFIGKNGLLITEEFGSFVYLGEVTTNIQF EPDEPVPNGCGDCTRCITGCPTGALLGDGRMNAQKCLSYQTQTKGMMPEEYRKKMRNVIY GCDICQLVCPYNKGKDFHFHEEMEPKIEEVYPKLAPLLTISNKEFKQQFGHLAGSWRGKK PLQRNALIALANLGGREAIPQIILCLNDQRPVIRGTAAWSLGQLAKREPEQSLEALNYLL SVETEAEVIEEAQKAIYLLTSKKGSRSTE >gi|284795522|gb|ADDQ01000027.1| GENE 128 128172 - 128666 588 164 aa, chain - ## HITS:1 COG:BH3450 KEGG:ns NR:ns ## COG: BH3450 COG0262 # Protein_GI_number: 15616012 # Func_class: H Coenzyme transport and metabolism # Function: Dihydrofolate reductase # Organism: Bacillus halodurans # 1 164 1 162 163 148 45.0 5e-36 MLAAIWAQDEQGVIGKEGKLPWHLPNDLKFFKEKTIHNTLVLGRATFEGMGCRPLPNRTT IVLTSNPDYQAEGVLVMHSVEEILAYADKYEGVTVIGGGSVVFKELIPACDVLYRTMIHE TFEGDTFFPEIDWSVWEKVATVPGVVDEKNLYAHDYETYHRNDK >gi|284795522|gb|ADDQ01000027.1| GENE 129 128684 - 129631 1164 315 aa, chain - ## HITS:1 COG:lin1988 KEGG:ns NR:ns ## COG: lin1988 COG0207 # Protein_GI_number: 16801054 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate synthase # Organism: Listeria innocua # 5 315 4 314 314 479 71.0 1e-135 MEEAYLALGKKILEEGHFKEDRTGTGTYSLFGYQMRFDLAKGFPLLTTKRVPFGLIKSEL LWFLKGDTNIRYLLERNNHIWDEWAFERYVKSADYQGPDMTDFGHRVLQDPAFAEQYKEE HQKFCDAILNDEEFAEKYGELGNIYGAQWRHWETKDGSFIDQLANVIEMIKTNPDSRRLI VSAWNPEDVPSMALPPCHTMFQFYVNEGKLSCQLYQRSADVFLGVPFNIASYALLTHLIA HETGLEVGEFVHTLGDAHLYQNHVEQMQEQLSREVRSFPTLVLNPDKASVFDFDMEDIKV EGYDPHPTIKAPIAV >gi|284795522|gb|ADDQ01000027.1| GENE 130 129649 - 131538 2213 629 aa, chain - ## HITS:1 COG:lin1989 KEGG:ns NR:ns ## COG: lin1989 COG0488 # Protein_GI_number: 16801055 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Listeria innocua # 1 629 1 630 630 637 54.0 0 MKELKVTDLTKTYGEKTLFDHLSFLIHEKDRIGLIGINGTGKTSLLNIIAGVDSGDGDLA AIQQPSDYQIGYLSQNQTFDENITIAEAVFQGDSPIIKAVKNYELALAALSENGLDEGVQ RRYTQAEEAMNKQDAWTADTNAKIILQKLGIPTLEKKIGELSGGQLKRVSLAQVLIEAPD LLLLDEPTNHLDYETIEWLENFLNNYRGAVLMVTHDRYFLDRVTNRIFELSFGKLYEYKG NYETYVMEKAERERVAVEQEEKRKRLFKQELAWMRAGVQARGTKQQARIDRFQDLKENLH QVQTNGTLEADFATQRLGKKVLEIKEGNYAIDHKQLLKDFNLLIQANDRIGITGKNGAGK STLLNILAGRIPLESGLYSIGETVRIGYYTQQNEEMDPNQRMIAYLQEAAEEVKRSDGSS VGVAEMLERFLFPRFMHGTLIGKLSGGEKRRLYLLKLLISQPNVLLLDEPTNDLDIDTLT ILEDYIQTFKGAVIAVSHDRYFLDKTMDKLLVFQGNGQILSFYGTMSEYLANQKEQEKVK EKPLNKPVKEASTEKKEKTKLTYMEQKEWATIEEDITQLETKLETLTEEMNHQGDDFVRL QELQEAVTATEQLLEEKMNRWEYLSEYAD >gi|284795522|gb|ADDQ01000027.1| GENE 131 131502 - 131597 94 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFWLNLLLLILSPTLPTPSILVLLIVSKIGL >gi|284795522|gb|ADDQ01000027.1| GENE 132 131648 - 133702 2126 684 aa, chain - ## HITS:1 COG:L187315 KEGG:ns NR:ns ## COG: L187315 COG0025 # Protein_GI_number: 15672365 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters # Organism: Lactococcus lactis # 1 666 2 662 680 437 39.0 1e-122 MEFTFLIIVFALSITFSNIFNRIVPVIPLPIVQIIVGVLIGLTKMGQEIEFEPEVFLVMI IAPLLFREGELINLKAMMKNFGMILFLAFFGVLITLVGVGWTLHMILPTLPLAACFAFGA ALGPTDAVAVGSLSGRIDIPERSMNILSGEGLINDASGVTAFQFALAALLTGSFSPVEAA GTLVISSIGGAVVGIVLVLLKQQIVHLLETAVAKDVTGYLLIELLLPFIAYLISELIGVS GIIAAVIAGIMQASSLKKVSLFEAELSNVGESIWSMIEFTLNALVFLFLGIELSQVFSPI WIDQQYSNWFLLMVVLIISAVVFLIRFLAIFSVYTLQHGLKKVKNAMNEMLILTFGGVKG TVSLATIFILPTAINGEHFKERPLLLFITACVILVTLIGGILVLPFLTDSETEVENEESV EIDLLRDVIDVLKQQNEENPRGEMNAVIENYQDRLKELYTEQLSAERKQEVQELRTLIVS IERDGLEESLKQGEISVRSYRMYQRLITRMQRSIAKQLLSIVGFWLLFARQIISILLHPK LFFNRGEASEEEKELRNEELENIRQVFLRNSQVILKSLDNLRGVYDDDLIDFFIDGRLDL AHKFEKGEFIDSYIVHTETDYVKDLLLGFQEERRMIDHYEQSERISIIEANELRKNVNLL ESYSISGEVNNVPLKRFVKNFNKE >gi|284795522|gb|ADDQ01000027.1| GENE 133 133738 - 134004 306 88 aa, chain - ## HITS:1 COG:no KEGG:EF1573 NR:ns ## KEGG: EF1573 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 88 23 110 110 97 98.0 2e-19 MSEEFEKCVADLKKKYQAIPEEKRQHFAERMQKKNFLRYKKIELIKGELLRLEARRAQLE LCERSSELEEVEKKIILKKKKLLKCFDR >gi|284795522|gb|ADDQ01000027.1| GENE 134 134148 - 134624 462 158 aa, chain - ## HITS:1 COG:no KEGG:EF1572 NR:ns ## KEGG: EF1572 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 158 1 158 158 287 100.0 9e-77 MIIDGFTLLLFLFVVVMYGYFYFVRKSIVIPAAKHPTTKYLVAFFSLMILANAFSAGDKI EMIRSVLYILIIFSFLYDARGFAEDCIITHPFDNRGTAFKDIEKIVLVQKPNGIRLGYLK KGRRGVVLRFSAPLEEMVLFLSTRMNEEAEIDIIVNED >gi|284795522|gb|ADDQ01000027.1| GENE 135 134636 - 134830 250 64 aa, chain - ## HITS:1 COG:no KEGG:EF1571 NR:ns ## KEGG: EF1571 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 64 1 64 64 72 100.0 6e-12 MKRNIALLQSEKMKKVQALANYYQESIDLPPGKNREAVIKKINESKKEIKEINDILTDIQ KKKK >gi|284795522|gb|ADDQ01000027.1| GENE 136 135024 - 135872 972 282 aa, chain - ## HITS:1 COG:lin2658 KEGG:ns NR:ns ## COG: lin2658 COG1307 # Protein_GI_number: 16801719 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 2 280 4 281 283 239 45.0 5e-63 MKIAIVTDSTAYLPERIKDHPNLFVIPIPVILDGKIYNEGIDIEADEYYALLNNSKEFPT TSQPALGEVLELYKSIAEQGYDTIISIHLSSGISGFVHTLHGLTDEIPGVALYPYDSKIT SMPMGHMVEAALDLTEEKASLEEIFAKLDLIRDNTYAYLIVEDLNNLVRGGRLTNGAALI AGLLKIKPILTFEDGKIVLFEKIRSTKKAFARAEKIIGERNAGIEAPVKLYVIHANNRIV AEKEQAKLQKLYPNAEIEIGHFGPVIGTHLGEKAIGLAISAQ >gi|284795522|gb|ADDQ01000027.1| GENE 137 135948 - 137120 1114 390 aa, chain - ## HITS:1 COG:lin0463 KEGG:ns NR:ns ## COG: lin0463 COG1316 # Protein_GI_number: 16799539 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 88 388 6 308 309 260 45.0 3e-69 MSRVDRYKHIHEKSRPAEHKKTFNPRKSMGEHREAEPEELAESLQEPVYEDSYTEDSRRS ERRHQTDSGGGNGSDQPPRGKKDKKPKKKRKKSKTKRFFKWLVILLILLFAYSTVMFLKG KSAAEHDDSLPQEKVETFNGVKSSNGAKNILILGSDTRGEDAGRADTIMVLQLNGPSKKP KLISFMRDTFVDIPGVGPNKINAAYAYGGAELVRETLKQNFNLDTKYYAKVDFQSFEKIV DSMFPKGVKIDAEKSLNLDGVDIEKGQQVMDGHVLLQYARFRMDEEGDFGRVRRQQQVMS AVMSQMKNPMTLLRTPESLGKLVGYMSTDVPVSFMLTNGPSLLIKGKAGVESLSVPVPDS WNFGESSYAGSILEVDEQKNADAIEKFLNE >gi|284795522|gb|ADDQ01000027.1| GENE 138 137264 - 138112 851 282 aa, chain - ## HITS:1 COG:SP1369 KEGG:ns NR:ns ## COG: SP1369 COG0077 # Protein_GI_number: 15901223 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydratase # Organism: Streptococcus pneumoniae TIGR4 # 1 280 1 275 282 273 51.0 2e-73 MKVGYLGPIGSFTYSATLAAFPDATLIPYASIPACLKAIEQQEVACSIIPIENTIEGTVN ASIDYLYHQAQLPVQAELVLPIQQQLMVAKENQAIWQQSQKILSHPQALAQSQMFLAKNF PEAILEATPSTAYAAKYIAEHPELPFAAIAPKLSAEMYDLTIVEKNIQDLSVNQTRFWVL GSENLAISFPLSEKKITLAITMPSNVPGSLHKALSVFSWRGINLSKIESRPLKTKLGEYF FLMDLVKDQPEKLIEAALIELELIGAEIKILGDYPIYVLSTL >gi|284795522|gb|ADDQ01000027.1| GENE 139 138120 - 138626 602 168 aa, chain - ## HITS:1 COG:SP1370 KEGG:ns NR:ns ## COG: SP1370 COG0703 # Protein_GI_number: 15901224 # Func_class: E Amino acid transport and metabolism # Function: Shikimate kinase # Organism: Streptococcus pneumoniae TIGR4 # 5 162 4 157 158 132 44.0 3e-31 MESIVLIGFMGAGKTTIGQSLANKLKMPHLDLDTALIEKIGRSIPDYFEKYGEAAFREQE TQLLKELSKNTAVLSTGGGIVVGPENRSLLKSFQQVIYLHATPEELLKRIKEDTENQRPL AIERSPKEIITLFESRKNFYEECAKMTIDTTNRSPEEIIHEILQQLKE >gi|284795522|gb|ADDQ01000027.1| GENE 140 138646 - 139926 1528 426 aa, chain - ## HITS:1 COG:SP1371 KEGG:ns NR:ns ## COG: SP1371 COG0128 # Protein_GI_number: 15901225 # Func_class: E Amino acid transport and metabolism # Function: 5-enolpyruvylshikimate-3-phosphate synthase # Organism: Streptococcus pneumoniae TIGR4 # 1 424 1 424 427 523 61.0 1e-148 MQLRTNVKHLQGTLMVPSDKSISHRSIMFGAISSGKTTITNFLRGEDCLSTLAAFRSLGV NIEDDGTTITVEGQGFAGLKKARNTIDVGNSGTTIRLMLGILAGCPFETRLAGDASIAKR PMNRVMLPLNQMGAECQGVQQTEFPPISIRGTQNLQPIDYTMPVASAQVKSAILFAALQA EGTSVVVEKEKTRDHTEEMIRQFGGTLEVDGKKIMLTGPQQLTGQNVVVPGDISSAAFFL VAGLVVPDSEILLKNVGLNQTRTGILDVIKNMGGSVTMLNEDEANHSGDLLVKTSQLTAT EIGGAIIPRLIDELPIIALLATQATGTTIIRDAEELKVKETNRIDAVAKELAILGADITP TDDGLIIHGPTSLHGGRVTSYGDHRIGMMLQIAALLVKEGTVELDKAEAVSVSYPAFFDD LERLSC >gi|284795522|gb|ADDQ01000027.1| GENE 141 139939 - 141033 1024 364 aa, chain - ## HITS:1 COG:lin2038 KEGG:ns NR:ns ## COG: lin2038 COG0287 # Protein_GI_number: 16801104 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydrogenase # Organism: Listeria innocua # 1 362 1 365 367 374 52.0 1e-103 MKKRILIVGLGLIGSSLALCIKKGHPSSEIIGFDNQADTTGFAKKTGLIDEIAESLTSGA RRAEIIFLCSPVKATLVQLEELNQLSLETALITDVGSTKVEINQLATKLNMKNFIGGHPM AGSHKSGVTAADERLFENAYYIFTDDHGEKSKQIQELQTLLKGTHAKFITMPAQEHDEIT GALSHLPHIVAAALVNESQQLNTTYPRAQQLAAGGFRDITRIASSDATMWTDILLSNRLV LLDLLENWQKEMTTVCQWLTEKNAPAIRNFFDKAKETRAQLPIHKEGAIPAFYDLFVDVP DQPGIIAEITQILGEADLSLTNIKILETREEIYGILQLSFKNQSDCQAAKQILSKKTNYT CYEK >gi|284795522|gb|ADDQ01000027.1| GENE 142 141067 - 142233 1500 388 aa, chain - ## HITS:1 COG:SPy0810 KEGG:ns NR:ns ## COG: SPy0810 COG0082 # Protein_GI_number: 15674852 # Func_class: E Amino acid transport and metabolism # Function: Chorismate synthase # Organism: Streptococcus pyogenes M1 GAS # 1 388 1 388 388 497 62.0 1e-140 MRFITAGESHGPELTAIIEGLPAGLPLSSEEINRELARRQGGYGRGGRMKIEKDQVRITS GIRHGKTLGSPVTLIVENKDWKNWTSVMSVEPVPEKQKKIRRVSKPRPGHADLVGGMKYQ HDDLRNVLERSSARETTMRVAIGAVAKKLLAELDIQVAGHVAVLGGIEATIPENLTIREI QERSEQSAVRVLDPSVEEKMKELIDQTKKNGDTIGGVVEVLVGGVPAGLGSYVQWDRKLD AKIAQAVVSINAFKGAEFGIGFEMAQRPGSQVMDEIVWDESTGYTRTSNNLGGFEGGMTN GMPIIVRGVMKPIPTLYKPLQSVNIDTKEPYKASVERSDSTAVPAASVVCEAVVATEVAK AMLEKFDSDSFEQMKEAVKRYRLYTQNF >gi|284795522|gb|ADDQ01000027.1| GENE 143 142235 - 143311 1324 358 aa, chain - ## HITS:1 COG:L0060 KEGG:ns NR:ns ## COG: L0060 COG0337 # Protein_GI_number: 15673738 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate synthetase # Organism: Lactococcus lactis # 1 354 1 356 356 401 56.0 1e-112 MKLTVTLPTHSYDLTIETGALDKIGTWVRSLWQPQRVAIITDETVNKLYGAAVEKELQAA GFETSLIAVAAGEQSKSLETAQLLYDFLAEQQLTRSDGLIALGGGVVGDLAGFVASTYMR GIHFLQVPTTLLAQVDSSIGGKTAVNTKKAKNLVGTFAQPDGVLIDPNTLKTLEPRRVRE GIAEIVKSAAIADVELWHRLSSLENEQDLVAHAEEIITACCKIKRDVVEEDELDLGLRLI LNFGHTIGHALENTAGYGVIAHGEGVSLGMIQITQVAEQRGLSPLGTTQELVTMLEKFDL PVTTDRWPEERLYQAITHDKKTRGGQIKIIVLEKIGQAKIVSLPTEEIRAFLNREGGI >gi|284795522|gb|ADDQ01000027.1| GENE 144 143334 - 144359 1263 341 aa, chain - ## HITS:1 COG:TM0343 KEGG:ns NR:ns ## COG: TM0343 COG2876 # Protein_GI_number: 15643111 # Func_class: E Amino acid transport and metabolism # Function: 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase # Organism: Thermotoga maritima # 1 333 1 333 338 344 51.0 1e-94 MIVIMKENATEKQMKQVIDLVTGAGLTTQTSQDNGKTVIGLIGDTEKLVEAELTALEGVE KSVRISLSYKLTSRLFHPENTVVDVNGVKIGDGSMTMMAGPCSIESLDQIRECARIAKAG GATILRGGAFKPRTSPYAFQGLEEEGLKYIRQAADELDMQVITEVMDEANLELVAKYSDI LQIGARNMQNFKLLQAVGKTGKPIGLKRGIAGTIDEWLNAAEYIAAQGNFNVIFIERGIR TYETATRNTLDLSAVPLIKKLSHFPIIVDPSHGVGIWDLVPPMARAGVASGADGLIVEIH PDPANAWSDGPQSLNEKTYLRMMKEVHIIEKAMKEINALED >gi|284795522|gb|ADDQ01000027.1| GENE 145 144396 - 145262 796 288 aa, chain - ## HITS:1 COG:lin0493 KEGG:ns NR:ns ## COG: lin0493 COG0169 # Protein_GI_number: 16799568 # Func_class: E Amino acid transport and metabolism # Function: Shikimate 5-dehydrogenase # Organism: Listeria innocua # 2 282 7 287 291 277 48.0 2e-74 MKEITGATRLAGLFAKPSQHSISPLIHNTAFQNLGVDARYLAFDVGQETLPQAIEAIRTF HMLGANLSMPNKVAAVSYMDELSPTAQLVGAINTIVNKDGKLYGDSTDGTGFMWSLKEKK VDVFQNKMTILGTGGAALSIIAQAALDGVKEIAVYNRKSAGFNDSQKKLANFTERTNCVI HLNDLADTEKLAKDVAESVLLVNATSVGMHPHAHSSPIENYAMIQPKLFVYDAIYNPRET QLLKEARLRGAETSNGLDMLLYQGAAAFEQWTGQKMPVSVVKRKIENR >gi|284795522|gb|ADDQ01000027.1| GENE 146 145751 - 146206 594 151 aa, chain - ## HITS:1 COG:no KEGG:EF1560 NR:ns ## KEGG: EF1560 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 151 1 151 151 301 100.0 6e-81 MAREMTGLKFYFRNGETWTIDRRFIGDLWIKHITTSFGRIHGSEFVEIHPCEGFKIEIFQ EGDHVQTHDINLGGLELGMFSRALKYEDIERMEILYKNGTPDLVYFPYKDKTDEGLDNIY QSTKVSEKTKNLYIVIDPTQTVDDVYAEELK >gi|284795522|gb|ADDQ01000027.1| GENE 147 146296 - 146670 449 124 aa, chain - ## HITS:1 COG:SPy1339 KEGG:ns NR:ns ## COG: SPy1339 COG5496 # Protein_GI_number: 15675277 # Func_class: R General function prediction only # Function: Predicted thioesterase # Organism: Streptococcus pyogenes M1 GAS # 5 123 3 121 121 70 30.0 9e-13 MPTEMFTKKFLVKESQTAKMLGSGDLEVLGTPALAAMIEQTAKEAVKDQLSVGETTVGTV LELRHLYPSAVGATIVVTMTGIEQTAHKIRYEFVAYEGERQIAKGSHQRAVVEIDSFLKR ITKY >gi|284795522|gb|ADDQ01000027.1| GENE 148 146670 - 147944 1290 424 aa, chain - ## HITS:1 COG:SP1554 KEGG:ns NR:ns ## COG: SP1554 COG0617 # Protein_GI_number: 15901397 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Streptococcus pneumoniae TIGR4 # 24 418 1 394 394 352 49.0 1e-96 MSASGTENRTTLRIGTDAMKLTTIPNEFKEAAPVIREINAQGFEAYFVGGSVRDALLNKP IHDVDIATSAYPEEIKQIFKRTVDVGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDE VTFVRSLKEDLKRRDFTINALALDSTGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALR MMRGLRFASQLDFKIEEKTLAAIAEFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIE TECYQYCPELREQGAGLFRLMDLPARQIETEAEAWTLLIQSLNLPEAEIRSFLKAWKLSN QLIQNVSQLVRGLRFRLSNDWQPMMLYELGEESAVLVERLLYYYQQESQVQVTKELVKAL PIHQRHELAITGKDLLAVLEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKKQRSK GEKA >gi|284795522|gb|ADDQ01000027.1| GENE 149 147887 - 148666 920 259 aa, chain - ## HITS:1 COG:SP1555 KEGG:ns NR:ns ## COG: SP1555 COG0289 # Protein_GI_number: 15901398 # Func_class: E Amino acid transport and metabolism # Function: Dihydrodipicolinate reductase # Organism: Streptococcus pneumoniae TIGR4 # 2 259 3 255 255 327 63.0 1e-89 MIKIIVAGFKGRMGSTATQMVLETADFELVGVYDPHEAQETVSFNDETAIPVFQRLEEVL AVKPDVWIDFTVPEAAYPNTRFALEHGMAPVVGTTGFTEEQINELTNLSREKAIGGLIAP NFAIGAVLMMQFAQKAAQYFPDVEIIELHHDNKLDAPSGTAIKTAEMIQEVRPAKKQGNP QEVESIPGARGADFEGLRIHSVRLPGLVAHQQVQFGSVGEGLTIRHDSYDRRSFMTGVAL ACRQVVQRTELLYGLEQML >gi|284795522|gb|ADDQ01000027.1| GENE 150 148659 - 149009 451 116 aa, chain - ## HITS:1 COG:SA1292 KEGG:ns NR:ns ## COG: SA1292 COG1694 # Protein_GI_number: 15927040 # Func_class: R General function prediction only # Function: Predicted pyrophosphatase # Organism: Staphylococcus aureus N315 # 7 110 2 105 105 121 65.0 3e-28 MSESEQRSLQSMQTEVDDYIQQFKTGYFSPLGQMARLTEEVGELAREVNHYYGEKQKKAD EKPKTVSEELGDVFFVLISMANSLEIDLTEVFEENMAKFNKRDRYRFERKDGKTHD >gi|284795522|gb|ADDQ01000027.1| GENE 151 149133 - 150017 929 294 aa, chain + ## HITS:1 COG:SPy2153 KEGG:ns NR:ns ## COG: SPy2153 COG1284 # Protein_GI_number: 15675895 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pyogenes M1 GAS # 14 279 16 281 290 282 52.0 4e-76 MEEQRFYFKDVLFIVLGSCIYAFGLVTFNIANDLAEGGVTGITLILRALFHFNPAYTTLL INIPLLLIGGKILGKRSLYYTLIGTVSLSVFLWFWQKFPVEINLDHDLLIAALLAGLAAG FGSGLVYRVGGTTGGTDVIARIFEKYFGISMGRSLLLFDVAVLLLSLTYIDVKRMMYTLI VSFVFSRVVDSVLDGAYAAKGILIVSNHSEEIGQSLMASLERGVTYLNGEGAYSQVEKRV LYTVVSPREIMEVKRIANEIDEKAFVSIINVHEAIGEGFTYAKPSKQRRFKLKQ >gi|284795522|gb|ADDQ01000027.1| GENE 152 150055 - 150594 658 179 aa, chain - ## HITS:1 COG:lin2035 KEGG:ns NR:ns ## COG: lin2035 COG5582 # Protein_GI_number: 16801101 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 3 179 5 179 181 119 39.0 3e-27 MFVSLSEKKKFLTWLVNTVPFGRREVLWILNYLLTHDAILNNVHFVENVEKTDRGIRVVA DGLGKEPLLLFIQAQEFTDPEQIFHEIRMNWRKALYLECVFPEAWQTSQYLSVLEDNPFA PWNEQVDQEVARAIDQYFKQEEQTQRMALLKAQIDDALETGNKEAFLELSDELNRLKQQ >gi|284795522|gb|ADDQ01000027.1| GENE 153 150604 - 151860 1660 418 aa, chain - ## HITS:1 COG:SPy1012 KEGG:ns NR:ns ## COG: SPy1012 COG0457 # Protein_GI_number: 15675015 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Streptococcus pyogenes M1 GAS # 1 412 1 406 415 239 40.0 7e-63 MSYSEKMVQALQAENLAEAQLMFEEALKKDDENTLADLGETLLSLGFLEEAKQIFQQLLE QFPDADGLNIPLAEIAIENNEIDDAFIYLEKIPETSDSYVQSLLVTADLYQVLGIPEVSE AKLKEAANLMPEEPLIQFALGELYFTNGQFVEAITRYQSIVESGTAQISAISLNERLGSS YSMLGDFEEAVPYLEAAVKEEQTDDRLFQLAFTYLQLHENQKAIALFQQLKTLNPHYQSL YLYLAEALQEEEQLEEAKAVIEEGIAENPFQVELYQFASENAYRLHDIAGAENWLLKALE LGEKTDESRLTLSNLYITEERFEEVITILNDLEETDHPYAEWNLAKAYNELEDFAVAKVH YEQAAQELSHEPEFLKEYALFLREEGELEKAKHLLYHYLEHEPGDVDMQSVLADMEER >gi|284795522|gb|ADDQ01000027.1| GENE 154 151870 - 152910 844 346 aa, chain - ## HITS:1 COG:no KEGG:EF1552 NR:ns ## KEGG: EF1552 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 346 1 346 346 681 98.0 0 MKYNYSRGENKVAIIYGETFASVLKKRPVTTESIVVLANQRYYDLFSEKINYAFGEQLGL NWYICRNDVHCNDLSELESVLRFLADWPENQEVLLIGLGNEGVLQLTAFLHQVSKCSSKC WLMPVSVQALRQGLLPSVTIQQAQHATMHIENHSEEILFDSTLTNKKGAAPLIDLLVFIR AGLVCDYAYLQMLYQTYPDKKRLNQTSFNGILDELLSFYEQAGEKVDQFGRVFEAAFATT ENGHLLSGPMKRLLGLLLQVLWSQQVNHFDFQFKNFIVWFIRLGFPVAFPKEILSADYAE QVLAHTETLGPPMVLEKIGQLGVALKPTPDQLLTTIERYQEILKEI >gi|284795522|gb|ADDQ01000027.1| GENE 155 153217 - 153492 179 91 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 [Haemophilus influenzae PittEE] # 4 91 6 93 96 73 38 8e-12 MANKAELIENVASSTGLTKKDATAAVDAVFSTIQETLAKGEKVQLIGFGNFEVRERAARK GRNPQTGQEIQIAASKVPAFKPGKALKDAVK >gi|284795522|gb|ADDQ01000027.1| GENE 156 153740 - 155050 1783 436 aa, chain - ## HITS:1 COG:SP1709 KEGG:ns NR:ns ## COG: SP1709 COG1160 # Protein_GI_number: 15901543 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pneumoniae TIGR4 # 1 436 1 436 436 692 79.0 0 MANPTIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGG IDLGDEPFMDQIKHQAEIAIDEADVIIFVASGREGITDADELVAKILYRSNKPVILAVNK VDNPEMRNDIYEFYALGLGDPFPVSGSHGLGIGDVLDEAVKHFPNTSEEEDEDTIKFSLI GRPNVGKSSLINAILGEDRVIVSDIEGTTRDAIDTYFESEEGQKFLMIDTAGMRKRGKVY ESTEKYSVMRAMRAIERSDIVLMVLNAEEGIREQDKRVAGYAHEAGRGIIIVVNKWDTVK KDTNTMRDFEAEIRDEFQYLDYAPIIFVSALTKQRLNKLPELIETVSMNQNLRIPSALLN DVIMDAVAINPTPTDKGKRLKIFYATQVAVKPPTFVIFVNEEELMHFSYARFLENQIRKA FTFEGTPIKIIPRRRK >gi|284795522|gb|ADDQ01000027.1| GENE 157 155224 - 156435 2025 403 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29376111|ref|NP_815265.1| 30S ribosomal protein S1 [Enterococcus faecalis V583] # 1 403 1 403 403 784 100 0.0 MTDFEDKQVANNETMEDAMNSVQEVSVGDIVKGEVLAIEDKQVVVGIEGAGVEGVVPAKE LSTLPVEDVHELVKVGDVLDLVVITSIGKDKENGSYLLSKRRLDAKKVWEEIEQDFQAGK VIEAPVTNVVKGGLVVDVGVRGFVPASMVEDHFVADFSEYKGQTLAFKIIEIEPSENRLI LSHKAVVEAEKESKKEELLSSLHDGDVVEGKVARLTDFGAFIDLGGVDGLVHVSEIAHQH VGKPSDALTVGEDVQVKILSINPEEGRISLSIKETLPGPWTDIETKAAAGTVLDGTVKRL TSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDQVQVKVLEVNPEEHRIALSIKA LEPKPESQEEPKEEQEYELPEENTGFTMGDILGDALSDAKEEE >gi|284795522|gb|ADDQ01000027.1| GENE 158 156549 - 157229 771 226 aa, chain - ## HITS:1 COG:SP1603 KEGG:ns NR:ns ## COG: SP1603 COG0283 # Protein_GI_number: 15901443 # Func_class: F Nucleotide transport and metabolism # Function: Cytidylate kinase # Organism: Streptococcus pneumoniae TIGR4 # 1 215 1 216 223 240 63.0 1e-63 MGKISIAIDGPASSGKSTVAKILAKQLNYVYCDTGAMYRAITYLALQNQIDIQAEEPLVA LCVNHTISFQQAENGQRVFIDGHEVTEAIRQPDVTNAVSAVSKHAKVREEMVALQQKIGQ AGGVVMDGRDIGTAVLPKAEVKIFLVASVEERAERRFKENQEKGIETDFETLKAEIERRD YLDSTREVSPLVQASDAVKIDTTGLTIEEVVAAIQNVIKQKGFELF >gi|284795522|gb|ADDQ01000027.1| GENE 159 157466 - 158095 743 209 aa, chain - ## HITS:1 COG:no KEGG:EF1546 NR:ns ## KEGG: EF1546 # Name: not_defined # Def: LysM domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 209 1 208 208 164 96.0 2e-39 MSKKDKKKNQAREPWEQSIYEPDQNGGGSRLAKRQQQRGNSLFLTVLVILLLLIIAIPIG TFLWMMQDKKPNESASKNSQPSSSLVQSSSKEKKKESTSKSVESSEPASSQPAENTTPSS SDAAAQQQQDQQAQQQQQQQQQEQQQQQEAQNQQQQQAQNQQPVYDTVQSGEGARQVAER NGMTLEQILALNPGIDTSVFYPGQPLRIK >gi|284795522|gb|ADDQ01000027.1| GENE 160 158171 - 159607 1343 478 aa, chain - ## HITS:1 COG:lin2056 KEGG:ns NR:ns ## COG: lin2056 COG0514 # Protein_GI_number: 16801122 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA helicase # Organism: Listeria innocua # 1 468 1 460 467 344 42.0 3e-94 MTLEQELFTRFGYAAFKPGQKEVITNLLDGMNTLAVLPTGTGKSLCYQFVGQKLEGLTVI VSPLLSLMEDQVRQLQRQGIKGAVALNSTLQYSEKRYILAKMFQYDYLFLSPEMLLQQEV LSVLQRQKIALFVVDEAHCVYQWGVDFRPEYSKLDLVQKQLDFPLTLALTATATPVVQHA IIKQLFSHGSYQEVLSSVNRKNIGLFVKETSEKEEVLLDYLSKTAGKIIIYCATRNKTEQ ISQLIQAKTSFKVAYYHGGLEASERSRLQEQFIDNQIDILCATNAFGMGIDKPDVRGVIH FDLPDSLENYLQEIGRAGRDGQKSWALLLYKKGDEFIHRFFLEETRANRATLKSLIEGEE QAGLLENATELQQKWVQGYLAKDYSFEELEHRLEEKEKDRQAQLRGMLTYIETTTCRRTL IQTYFQEPIVKQSPETCCDNCALFFDIYQDSIVKSNKTSNQNEEGWRSKFLKLFKERD >gi|284795522|gb|ADDQ01000027.1| GENE 161 159614 - 160648 650 344 aa, chain - ## HITS:1 COG:BH1606 KEGG:ns NR:ns ## COG: BH1606 COG4955 # Protein_GI_number: 15614169 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 21 337 26 347 359 83 25.0 8e-16 MEATFILALLSHGYKVRASTLYHLLKGKRTSSVLIYGFLYDCLRFIGWWPTISEQAYFQF LEKLSKAKQIQYHKETNEIQLTKEGQLFLKEHHFSLLDYPAIDLYRFGRSDRESWQLIQF AVQVTSYLSFEEKQYIPLLSTPIPQLYLKRWLQQDKKEQRVQSIKGELLRGFELLPEAES DYLVAQLSGYQQTGKVPQQLTSHKTALEQRLWHTQAVHHLLQLIMYGGNYPALQTLVWPY LEKNLNQSMQETQRLLTEGKTLQEIAEQRKIKPSTIHDHLLELAIQGQLQASVYLEKEAI LQNLAQTEQDPRLWVYRDWRAQEATLSYLDFRLYQIQQIWQEKE >gi|284795522|gb|ADDQ01000027.1| GENE 162 160684 - 160902 190 72 aa, chain + ## HITS:1 COG:L176167 KEGG:ns NR:ns ## COG: L176167 COG1141 # Protein_GI_number: 15673687 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Lactococcus lactis # 1 70 1 67 67 66 42.0 1e-11 MQSRLVPEKCIACGLCQVYAPNIFDYDDHGIVLFKDEPHARQQFIPENERENVLKAYRKC PTRAIEISKNEC >gi|284795522|gb|ADDQ01000027.1| GENE 163 160925 - 162331 1398 468 aa, chain - ## HITS:1 COG:BS_yvbJ KEGG:ns NR:ns ## COG: BS_yvbJ COG4640 # Protein_GI_number: 16080441 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 4 292 4 295 605 103 21.0 6e-22 MKKCKNCRHVNRDTESFCEECGAPLMNESMHQEENQAQPSMNKGNESTPLRSKRSWIWVF LFVFIVLGAGSYFLGTHYFSKEQQISHFIEAIENGDAQELSKKMRTNESEFQVNPQSIKP LITYYQKNPTELKKLEKALLKDKKLHGLTIRETSQTAFFFHRYQFILTPVSVQLTTNQRG VTLAMNGREVGTSDSTTYQKELGPLAPGQYTFTATVKDSTGEPVITEEYRLLEEENYISS IPLDFKRMNFVVESNLPDADIYINDRKVGTLTNGSKTIGPLFWSKGMTIQLKKTINGEEI QTSKETIGENDFVEALSDNPTLQLNFPLASDYDARKALETFYQAFAKQVKSHTDSTEFAK KYLVDGENNPQFPSFIEALERLREKKSTDVSPDFEVTINTLQLDGKENYHVNYYLEAKNS KAKENGLRYEWINGLNDQIHLVKEPLKEGQLQFVSIDEQTLAWLEKIL >gi|284795522|gb|ADDQ01000027.1| GENE 164 162512 - 163177 478 221 aa, chain - ## HITS:1 COG:lin2059 KEGG:ns NR:ns ## COG: lin2059 COG3601 # Protein_GI_number: 16801125 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 22 216 3 192 203 114 34.0 2e-25 MTKKRIKKFVEDGSLIGGFQMNNKVQKMVSIAMLAAIGTVLQFVAFPIMPAFSFLKIDFS DIPILLGMFLYGPLAGVITAFVRSLLHLFLTGLAPQNMVGDFASFLASSIFTLPIFYFFG KKKNIRTNRIVGLVSGILALTIFMSIANYFVITPIYLQLYGVTTQQFLGTSLASYVAIGI VPFNLIKGLLVSGVFLVLHAKLLPWLSKKQHTIQKKTPLTK >gi|284795522|gb|ADDQ01000027.1| GENE 165 163520 - 164236 1085 238 aa, chain - ## HITS:1 COG:SP1874 KEGG:ns NR:ns ## COG: SP1874 COG1187 # Protein_GI_number: 15901702 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Streptococcus pneumoniae TIGR4 # 3 237 2 236 240 285 63.0 7e-77 MERLQKAIAHAGVTSRRKAEELIVKGRVKVNGQVVKELGTQVSKQDTVEVDGVPIYQEEY GYYLFYKPRGVISAVSDDKGRKVVTDYFTDVTERIYPVGRLDYDTSGLLLLTNDGSFSQK LTHPKHEVDKVYVAKIKGVPTKRDLLPLAKGIRIDGKRTAPANFQILSADIKTGSSVVEL TIHEGRNHQVKKMFQAVGFPVQKLKRERYGELTLQGLRPGQYRDLTKKEISQLLNQAK >gi|284795522|gb|ADDQ01000027.1| GENE 166 164240 - 164845 796 201 aa, chain - ## HITS:1 COG:SPy0367 KEGG:ns NR:ns ## COG: SPy0367 COG1386 # Protein_GI_number: 15674517 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing the HTH domain # Organism: Streptococcus pyogenes M1 GAS # 1 175 1 175 183 162 50.0 4e-40 MTLVSQIEAILFVVGEEGIGLEELAYLLEKSTAKTYEELTKLKEHYASDNKSALNILEVG NHFVLTTKKKYASLLKKYAQSPMSNALSQAALETLSIIAYKQPISRIEIDEIRGVQTSGS IQKLVARQLIEEKGRVDGPGRAILYGTTKYFMDYFGLKSLDELPDIQQMEDELEEELPMD LFFDRYQETNPMSETTEGEEA >gi|284795522|gb|ADDQ01000027.1| GENE 167 164842 - 165627 966 261 aa, chain - ## HITS:1 COG:lin2065 KEGG:ns NR:ns ## COG: lin2065 COG1354 # Protein_GI_number: 16801131 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 242 1 239 249 194 48.0 1e-49 MQEINLKLDVFEGPLDLLLHLIQKLEIDIYDIPITAVTEQYMSYIHAMQTLELEVAGEYL VMAATLMAIKSQMLLPKQELEIIDDEDFFEEEDPREALVAQLLEYRKFKYAATVLHEKEE ERKLYYTKEPMDMDDYKEEDTTLPPNQINTIDLFLAFHAMLEKKKNRQPVETTVASDDVS IEEKITAISERMRQVQKGKAVSFDSFFDSYSKQEIVTTFMALLELMKTGVIYAEQENNYS EILLFNTETQQEDTTEVEETQ >gi|284795522|gb|ADDQ01000027.1| GENE 168 165701 - 166591 876 296 aa, chain - ## HITS:1 COG:BS_ripX KEGG:ns NR:ns ## COG: BS_ripX COG4974 # Protein_GI_number: 16079408 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Bacillus subtilis # 1 296 1 296 296 317 53.0 2e-86 MEEQLVDYLHYLQIERGLSNNTRRSYERDLKKYVAFLQEQGLHSWDEVDRYMITEFLQSL HEEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDEVTRLI ETPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLG DYAIQWIERYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQIEKNIT PHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEHFPRA >gi|284795522|gb|ADDQ01000027.1| GENE 169 166760 - 167689 1197 309 aa, chain - ## HITS:1 COG:lin2180 KEGG:ns NR:ns ## COG: lin2180 COG1073 # Protein_GI_number: 16801245 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Listeria innocua # 7 306 11 317 319 289 47.0 5e-78 MNRWLKILIALIVVIAIGLIAAGLYFYNYAVVPGKKDFINENTPGSKVVQTPEGAWFKDD KNRQEWSITSEDGLRLKAIYLPADKKSNRTVIMAHGYMGSAETMSVFAKMYHDWGYNVLA PDARGHGKSQGDYIGFGWPDRKDYVQWIEKVLTENGQQEQITLYGVSMGAATVMMTSGEK LPDNVKAIVEDCGYSTVNQELQYQLKELFNLPSFPLVNVTSGITKLRAGYFFGEASAVKQ LQKNHLPMLFIHGENDTFVPFSMLDEVYNATQGPKEKYVVPGAEHAKAYNKNPEKYKETV AAFLDKYIK >gi|284795522|gb|ADDQ01000027.1| GENE 170 167883 - 168974 1349 363 aa, chain - ## HITS:1 COG:L176316 KEGG:ns NR:ns ## COG: L176316 COG3589 # Protein_GI_number: 15672155 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 363 1 363 364 575 76.0 1e-164 MGKLGISIYPERSTFEKDKAYLDLAHKYGFKRVFTSLLQINDDREKVLAEFKKVVDYANQ LGMEVMVDINPALFEQLGISYDDLSFFHDMGAYGIRLDLGFTGQEEANMTRNPYGIKIEI NMSSGTSYVDNIMAYSPNTENLLGSHNFYPHRYTGLGYDHFVYCSEKFRKYNLNTMAFVN SHDATFGPWPTQDGLCSLEDHRDLEIATQVKHLVLTGLIDDISVGNAYASEAELAAMAEA FHAPYPSIKVDTEPEITEDERIALFDNLHSYRGDRSDYVLRSTMTRVYYKDRPFPAHTTR DIVRGDVLIDNVGYGQYKGETQIALKEMKNDGRVNVVGRISDDERFLLEFLKPWSSFKLI ENK >gi|284795522|gb|ADDQ01000027.1| GENE 171 169156 - 169905 798 249 aa, chain + ## HITS:1 COG:lin2475 KEGG:ns NR:ns ## COG: lin2475 COG0652 # Protein_GI_number: 16801537 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Listeria innocua # 57 243 4 193 194 238 62.0 7e-63 MKHKKMLAVASVAAFTLLLAGCNTTNNKGTTATSDSVAKSSESKTKDSVDLNSLDLPQLD DKVAEDQDLVQMVTSMGNIEIKLFPKQAPKTVENFMKHAKDGYYDGLTFHRVINNFMIQG GDPSGDGTGGNSIWNKPFEDEFSNQLYNIRGALSMANAGPNTNGSQFFIVQNTDDQSDGL LYDDYPKAIIDAYKKGGYPSLDKKHTVFGQVTKGMDIVDKIAKVEVGANDKPKTDVKIEK INILQEAKK >gi|284795522|gb|ADDQ01000027.1| GENE 172 169985 - 170323 495 112 aa, chain - ## HITS:1 COG:SA0358 KEGG:ns NR:ns ## COG: SA0358 COG5294 # Protein_GI_number: 15926072 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 102 5 100 122 61 37.0 4e-10 MKFIKFLVVTAIVIGGGLFGAKFYAEKNSGELAGVLDQLNPLVKEGNVYVKTKKADSVNG YGIASYTQVAADEEGKTREITFTADHELKTDHYLKVSNKGAHINTYEEVNQD >gi|284795522|gb|ADDQ01000027.1| GENE 173 170466 - 171005 618 179 aa, chain - ## HITS:1 COG:no KEGG:EF1531 NR:ns ## KEGG: EF1531 # Name: not_defined # Def: TetR family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 179 1 179 179 308 99.0 4e-83 MVRTKVYTKEKILNVAEKILVDKGFSNLTARNIADAMGISTQPIYLEFVNMDDLKRTLIK SLFHRMQLFYKADVGASDPVIALGLNFILFAQKHQKIYTALFMKAHGYEEELQQMLQTFF EEHLLLDKKYVQMDKGKFVELFPKMVVIYLGLATAVTMKTIDLTKNQEIQLLSQLLIEE >gi|284795522|gb|ADDQ01000027.1| GENE 174 171231 - 172529 1649 432 aa, chain - ## HITS:1 COG:VC1282 KEGG:ns NR:ns ## COG: VC1282 COG1455 # Protein_GI_number: 15641295 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Vibrio cholerae # 1 426 6 428 446 275 38.0 9e-74 MLDKLTVWIENHLAGPMAKIANQRHLRAVRDGIIATLPLIIVGSFFLIIAFPPLPESWGI TQFLTSNAATILLPYRMTMYIMALYATFGIGASLAKSYNLDQVSGGILATIAFLLTLVPV AIPEEASKAAGVSGFVLPMANLGGAGMFVGIVTSIIAVEIYRVTDKSKFKITMPDNVPPA VARSFESLTPTLIVMLLIGSITYYLGFDWHTFVGNLVGPLVQAADSLLSVLLLVFLTTFF WFFGIHGASIVGSLARPLWLQLLEENTTAKAAGEALPRIAAEPFYQWFIWIGGAGATIGL AILLAFRAKSEYGSKLGKAILAPSIFNINEPVIFGVPIVLNPILMIPFIFAPMVLATIAW FATKLGLVSEVVFTAPWTLPGPIGAFMATGGDWRAAVLNIVLILVAILIYYPFFVAYDKN ELAKEQGKQIEE >gi|284795522|gb|ADDQ01000027.1| GENE 175 172556 - 172858 326 100 aa, chain - ## HITS:1 COG:no KEGG:EF1528 NR:ns ## KEGG: EF1528 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 100 1 100 100 139 100.0 3e-32 MENNQAMVPKFSVKSAGFLFSMGLLCGVLLPSVLLWTFSLPFNIGAMIFLPVGIAFALAY SHYFIETKTGFCKRFIWLFLISLILLELISYLWLIKGVIF >gi|284795522|gb|ADDQ01000027.1| GENE 176 172997 - 174313 2008 438 aa, chain - ## HITS:1 COG:SP1079 KEGG:ns NR:ns ## COG: SP1079 COG0536 # Protein_GI_number: 15900948 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Streptococcus pneumoniae TIGR4 # 3 438 1 434 434 610 77.0 1e-174 MSMFLDQVTIDVKAGKGGDGMVAFRREKYVPDGGPAGGDGGRGGDVVLVVEEGLRTLMDF RFNRHFKATPGENGMSKGMHGRGSEDLLVKVPPGTTVRDAETGALIGDLIENGQTLVVAK GGRGGRGNIRFASPRNPAPEIAENGEPGQERKIELELKVLADVGLVGFPSVGKSTLLSVI SSARPKIGAYHFTTLVPNLGMVTTSDGRSFAAADLPGLIEGASQGVGLGTQFLRHIERTR VILHVIDMSGMEGRDPYEDYLAINKELASHNLRLMERPQIIVANKMDMPEAEENLAKFKE QLAKERTDEYADELPIFPISGVTRKGIEPLLNATADLLEVTPEFPLYEDEVVEEETVRYG FQPEGPEFTIDREPDASWVLSGEKLEKLFEMTNFDHDETVMRFARQLRGMGVDEALRARG AKDGDIVRIGNFEFEFVE >gi|284795522|gb|ADDQ01000027.1| GENE 177 174601 - 175611 1141 336 aa, chain + ## HITS:1 COG:ECs2022 KEGG:ns NR:ns ## COG: ECs2022 COG0057 # Protein_GI_number: 15831276 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Escherichia coli O157:H7 # 4 336 3 333 333 457 69.0 1e-128 MTVKVGINGFGRIGRLAFRRIKEVSDDIEVVAINDLTSPTMLAHLLQFDSTHGTYPGTVT ATENGIVVDGEETRVYAEPDASKIPWVKENGVDIVLECTGFYTSEEKAQAHLDAGVKRVV ISAPAGAMKTIVYNVNDDTLDANDKIISAGSCTTNCLAPMAYFLNNEFGIEVGTMTTVHA YTSTQMLLDGPVRGGNLRAARSAADNTIPHSTGAAKAIGLVIPELNGKLQGHAQRVPVVD GSLTELVSILKTKVTADQVNEAMKKHTIDNPSFGYDDREIVSGDIIGTTEGSIFDPTQTE VTTAGDFQLVKTVAWYDNEYGFTCQMIRLLEKFANL >gi|284795522|gb|ADDQ01000027.1| GENE 178 175662 - 176111 510 149 aa, chain - ## HITS:1 COG:lin2070 KEGG:ns NR:ns ## COG: lin2070 COG0735 # Protein_GI_number: 16801136 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Listeria innocua # 9 148 7 146 152 201 70.0 3e-52 MDSTAALKKTKKQLHESGFKLTPQREATVLVLLENEKDHLSAEEIYFLVKQKSPEIGLAT VYRTLEILTDLKVVDKVSFNDGLARYDLRKEGAKHFHHHLLCLECGTIEEVEEDLLGEVE QIVESRYHFLVKDHRLTFHGICQSCQSKH >gi|284795522|gb|ADDQ01000027.1| GENE 179 176227 - 177108 525 293 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains [Anoxybacillus flavithermus WK1] # 14 284 10 281 285 206 41 6e-52 MRELLATTFTGIVVDENEQFYFVQKNGITFRLKKEEGTHAIGEAVEGFGYLNQKQEPALT TTIPTVRIGSYGFGTVTGTRRDLGVFVDVGLPDKDVVISLDELPTMRELWPKKEDRVMVT LKVDSKDRIWGELADEKVFKAMAKRGNAEMQNQNLTGHVYRLKLAGTYILTDDLYIGFIH PSERFQEPRLGEKVVGRVIGVRPDGVLNLSLKPRSHEVISDDALMILTFLERANDHQIPF TDKSSPDEIKQTFGISKAQFKRALGHLMKQKLIKQEDGKTILIGSLEQSKEKN >gi|284795522|gb|ADDQ01000027.1| GENE 180 177182 - 179245 2249 687 aa, chain - ## HITS:1 COG:no KEGG:EF1523 NR:ns ## KEGG: EF1523 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 687 1 691 691 886 96.0 0 MTKKCPKCGNEFDAELTTCPTCGYSLTDTTVDKEEAETTSTNIDFETQENEQHEDQLNEN IEWSELKDMSLGHVMELFGESPEEESNDDKKEESTEDNLIVSDSEDVSGLETSLQEGASE ETHDSVEKSTPATEETPTHSTEEKLATDEAVNLEETTEETTTVEAETAEVSKTVKSEEEA LTEISGTEVISTTSEEEIFSQPPIEDQDVTPNETLQAYIQAHRADTEMSENPSEETAETQ ELENSGEAVLTQAETPTESISDSEEGLTSAASLEAPSDADATEEKVSNSGVIPPMNETGN AQPAPAPKKPSKKVAFVALAVVLLAGGSAWAYHDQTQKAAAQEAAALTKKTDTLKDELAA FYTTKEQAFIKPDMVTVSPEKLSKQVAEIKDSEEYSQLNKQIQTLKEKQQTIQQINQLFE APIVNGNELKPAILAADQPISVKKLTGNDPFNQLMNQAIDQANQQYNQLQKAKKAVEVIY KDGKTTNQLNRDTYQAAKAEVDKVTSDKLKKELVKQVTTADQALTKVEEEQKRIAEEQAA AEQAKQAEEQAKQAAAAKKENAKKEEPAKTEANGYTAPNSDGVYTSPLYAPDAADIADSS NPAWTWAPGVKEKVLDTVIARGYVVPGGYSLEPAKIVNGEGYYNLYATNNQSKLLEGTTE KNVHMYLVTINAKTGWFKGNASRNAGQ >gi|284795522|gb|ADDQ01000027.1| GENE 181 179397 - 180503 1495 368 aa, chain - ## HITS:1 COG:lin1491 KEGG:ns NR:ns ## COG: lin1491 COG0568 # Protein_GI_number: 16800559 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Listeria innocua # 10 368 17 374 374 494 79.0 1e-139 MEKETSKKYEAAVAAFIKENKPKGTVVYDDLANQLATPYTLDAEAMEKLIQKVEDAGISV VDENGDPSEHSLKKDEKEAEKAQAEDLSAPTGVKINDPVRMYLKEIGRVQLLTAAEEVEL ALKIEEGDQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKG FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIG AEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQL EDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS KQLKDFLE >gi|284795522|gb|ADDQ01000027.1| GENE 182 180612 - 182498 1866 628 aa, chain - ## HITS:1 COG:lin1492 KEGG:ns NR:ns ## COG: lin1492 COG0358 # Protein_GI_number: 16800560 # Func_class: L Replication, recombination and repair # Function: DNA primase (bacterial type) # Organism: Listeria innocua # 4 623 3 622 626 452 41.0 1e-126 MAQRIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKNYMGLCPFHEERSPSFSVAEDKQIFH CFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVADTPENQQRRSLL QLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKNEQ LDEALFEPSGLFVQRDNGTFLDRFYQRIMFPINDPQGNVIAFSGRLLKTADFPGDEMPKY LNSPETTLFNKRETLFNFDKARKEIRKENTVLLFEGFMDVIAAWQSGVKSGVASMGTSLT NEQIRRLERVAKEVVICYDGDNAGVQATNRAIQLLQENSHFDLSIVSIPEKLDPDEYVRK YGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELLRELTNVQSPLERDRY LNQIAQEFQLSVHSLEEQFNQLKQAQRSVQRQERQQFYQDEMMPPPMEEPVFEENHVQNK LPLTQVQKAERSLLFRLMNEQGVRQTIQQLPDFSFAHDEYQELYFLLESYATLHQSFDIA DFINFLQDNQTKQLAIEIAYQNLSEESSEREVADLLHVIALSSIAEAIEQKKIQQQEAKR VGNQQLEAELTMEIIQLARQLKAQRTFT >gi|284795522|gb|ADDQ01000027.1| GENE 183 182815 - 185151 2429 778 aa, chain - ## HITS:1 COG:SP1623 KEGG:ns NR:ns ## COG: SP1623 COG0474 # Protein_GI_number: 15901459 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pneumoniae TIGR4 # 10 770 8 778 778 672 48.0 0 MLNKVDLKKGLSTEEVAKQKELGLQNNYEENVAKSTKDIIFDNVMTLFNFLNFAIAVCLL FVGAYSNLAFLAIIIVNMSIGIFQEIHARNLVQKLSIVAKENVHVVRNGVQQEIDTKELV MEDIVIISAGEQVPSDMEVIDGKVEANEALLTGESDLIEKEIGDTLLSGSFIVSGQAYAR VIHVGAENYAVKITQEAKVHKPIQSELVNSIRKVSKFTSWVIIPLGIILFVEAFWLRDAG IKTSVVASAAALLGMLPKGLVLLISIALTTGVIKLAKKRILVQDMYSIETLAHVDTLCLD KTGTITEGKMKVQKAIILHDKYEELFPQIIGSYLSESTDNNITMQAIRDHYEVSNRFGAK EVLAFSSERKWGAIEFPEIGTVYLGAPERLVDDSRLPEAVFTAQENGYRVLMLAIAEQQP LNETKMPYLEPLAILEIDDPIRQNAKETLAYLKEEGIDLKVISGDNPVTVSNIARRAGLP SYESYIDLSTKTTEAEVREAVQQYTVFGRVSPQQKRTIVRELKDTEHVVAMTGDGVNDVL ALREADCSIAMAEGDGATRQISNLVLLDSDFTTLPDVLFEGRRVVNNVTRVSSVFFIKTI YSFILSIICALTAIAFPFIPIQVTLIDLAIEGYPAFFLSFEGDKRKVVGKFLPTALKNAS VNALLVVANIIAVYLIGQNQGFSSLDTTTLMYYLLVGISCMAVVRACLPLNPLRIFLVFS TIIGIYVAAMLFHNILEIGFLTSQTMGLFFIMMAINIVVRVAIGFVQMKRAGKTIKDL >gi|284795522|gb|ADDQ01000027.1| GENE 184 185280 - 185864 752 194 aa, chain - ## HITS:1 COG:SPy1147 KEGG:ns NR:ns ## COG: SPy1147 COG0741 # Protein_GI_number: 15675124 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Streptococcus pyogenes M1 GAS # 2 194 12 197 199 156 45.0 2e-38 MLLLFVGLVAGLGYLGYKIHQNVETVMTFEKQVEAEVKKNKIPEYKTLALAIIYTESKGK SGDIMQSSESVYGQQEVIETPEESIAHGVKFLAEALAKAKEAGCDEWTGVQAYNYGLDYI QFVKERGGKHTTELAEEYSREVLSPLLGNDQNTKYRYYRWQALVYNGGYLYQNGGNMFYA EIVKMNRWFIEKLN >gi|284795522|gb|ADDQ01000027.1| GENE 185 186188 - 186877 553 229 aa, chain - ## HITS:1 COG:SP1616 KEGG:ns NR:ns ## COG: SP1616 COG0036 # Protein_GI_number: 15901453 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Streptococcus pneumoniae TIGR4 # 1 229 1 229 231 379 74.0 1e-105 MNKVEFSPSLMTMDLDKFKQQITFLNDHVASYHIDIMDGHYVPNITLSPWFIEELRKISK LPVSAHLMVTNPSFWVQQLVDIKCEWICMHAEVLDGLAFRLIDQIHNANLKAGIVLNPET PIESIFPYIELLDKITIMTVDPGFAGQRFIEGTLDKIVALRNLREEKGYRYVIEMDGSSN RNSFKRIDAAGPDIYIVGRSGLFGLNEDIEKAWRMMSRDYEEMTGKKIP >gi|284795522|gb|ADDQ01000027.1| GENE 186 187015 - 188115 1462 366 aa, chain - ## HITS:1 COG:SP1617 KEGG:ns NR:ns ## COG: SP1617 COG1299 # Protein_GI_number: 15901454 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Streptococcus pneumoniae TIGR4 # 4 366 2 361 361 404 67.0 1e-112 MKKLKELNLKGHLLTAISYLIPIVCGAGFLIAIGMGFGGSSQGTLVPGEFSLWDALATMG GAGLGLLPVVISTGISFSIAGKPGIAPGFIIGLTANAVGAGFIGGILGGYLAGYLVLAIL KYVKLPNWARGLMPTLIIPFLTSITGGLIMVYIIGTPITAFTSLLTNFLDSLGNSSLLIF GGVIGLLSGIDYGGPINKTVFAFVLTMQAEGLNGPITALQLVNTATPIGFGLAFFFAKLF RKNIYTKLEVETLKSAVPMGVINIVEGVIPLVMNDIVRGVIATAIGGFVGGATTMILGAD ATVPFGGVLMIPTMSKPLAGIIAIVVNAVVTGLVLAIIKKDVTEKDMEALVEKEEEEINL EDIQIF >gi|284795522|gb|ADDQ01000027.1| GENE 187 188225 - 188674 465 149 aa, chain - ## HITS:1 COG:SP1619 KEGG:ns NR:ns ## COG: SP1619 COG1762 # Protein_GI_number: 15901456 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Streptococcus pneumoniae TIGR4 # 1 148 1 148 149 168 55.0 3e-42 MEVKDIIDLKTVKTNMNVNTKEEALKELANLLLENGNISDEKGFIKDIYVREAEGQTGIG NYLAIPHGKSAYVKKIGVAIGINGTEIPWESLDDNGVKGIILFAVGNDHKETTSHLKLLS LFARKLGNDEVVREFLQSKSPEDVVKAFS >gi|284795522|gb|ADDQ01000027.1| GENE 188 188694 - 189011 495 105 aa, chain - ## HITS:1 COG:SP1618 KEGG:ns NR:ns ## COG: SP1618 COG1445 # Protein_GI_number: 15901455 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system fructose-specific component IIB # Organism: Streptococcus pneumoniae TIGR4 # 1 103 6 108 108 125 79.0 1e-29 MKIVGVAACTVGIAHTYIAQEKLENAAKKAGVEIHVETQGTIGIENKLTDEQIKEADIVI LAIDVKISGRERFDGKRIIQVPTEVAVKSPTKLIEKAEEVMTQEK >gi|284795522|gb|ADDQ01000027.1| GENE 189 189011 - 189463 526 150 aa, chain - ## HITS:1 COG:no KEGG:LGG_00394 NR:ns ## KEGG: LGG_00394 # Name: not_defined # Def: PTS system transporter subunit IIA # Organism: L.rhamnosus # Pathway: not_defined # 9 131 8 129 142 75 37.0 6e-13 MNVNPLYQVFLNQELLSKQQVYQFIAETAAPLLTPEEKKQMEESLVNREKMGSNQIAEQV VLPHLENALLKKSEIYLIGLKTEIQAWTADIKQVKLIIVILLKENERLKVKKEISRFTRK LANEDFLEKLLRLKTETDFYKIIEKFEEEK >gi|284795522|gb|ADDQ01000027.1| GENE 190 189453 - 190934 832 493 aa, chain - ## HITS:1 COG:lin2243 KEGG:ns NR:ns ## COG: lin2243 COG3711 # Protein_GI_number: 16801308 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Listeria innocua # 3 489 4 485 485 318 39.0 1e-86 MSSKKERGQKLLLLLSKKQDYMTAEELANCLSTSPKTVYRLIKTINDEFSEGSLILSEKG RGYKLDYERFMEQNRHLAEKESDFSPRERRNRILEELLLASPQAKNVYELFARYYVGDSV IFSDEQQLSEDLKKYDLTLKRKNRTLAIIGEERAIRKAISDRIQLLNIIDIEDLRNNKAL NFNNYDVLFTLDQVRNIEKKLDITIPHPYNVNIFSHLYILISRSRKVAISEKYQLSNEEE QELTKDLVLKKVAQTTIQQIETYLNKRLPNVEIYYLYQYLVSSRMQGSFSKVTNFSFKVM QITQFYLEEMSAQLKILTDNDQLLLELASHIKPMINRLENGIHVKNSLLDQIKMTYETIF RKIVQVSKQVSKNYQLPAINEDENGFITLYFARMIETNQLPIRTLIMCTTGIGTSELLRV KVEKKFPELQIVEIIATRNIRKSLKDYSDIELILTTIHLQEKVPIKSLLVSAMFTMDDQY RLQRKVEEIYHER >gi|284795522|gb|ADDQ01000027.1| GENE 191 191175 - 193172 2494 665 aa, chain - ## HITS:1 COG:YPO2628_1 KEGG:ns NR:ns ## COG: YPO2628_1 COG1263 # Protein_GI_number: 16122841 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Yersinia pestis # 3 401 5 406 410 454 58.0 1e-127 MKAYMQRMGRSLMLPVAVLPAASLLVGIANWIVGTIGASPATTFLMNGGLAILNNLALLF AVGLALGMSKDKDGSAALAGLVAYLVPKTVLAPASIQAIKGFKDIAEVNPAFNSMDNNVF VGIVAGLVAAAMYNRFSGVKLPMALSFFSGKRLVPIMSAISMLAISAVLFFFWPVVYNGL VAFGKGISSLGFVGAGLYGFFNRLLIPTGLHHALNSVFWFDVAGINDIGNFLAGQQALDT GKAIVGQTGMYQAGFFPVMMFGLPAGAFAIYQCARPEKKKVTASLMLAAGFAAFFTGVTE PLEFSFMFVAWPLYVLHAVFTGISLAFAAFMHWTAGFAFSAGFVDFFLSLKNPVANHPMM LVVQGLVFAAIYYFGFRFAITKFNLMTPGREEGDGEETPDVAEGDNKFASLARRIYDGLG ADANVTSIDNCTTRLRLTVKDTGKVDQAKIKATGVPGVKVIDDTNIQVIVGTEVQFVADE MQRLYNHQAPATPVKETPVSQPVVEEKAPVSTKETELYSVANGKVIPISEVPDDVFSAKM MGDGFAVVPTDGEVSTPVAGKITSIFPTKHALGIQTDSGIEVLLHMGLDTVELQGGPFTL HVEEGQVVKQGDKIATIDLAALEQAGKKSDLIVVFTNQDIVAQYDLQKAGQTTSINDVIG NVTVK >gi|284795522|gb|ADDQ01000027.1| GENE 192 193209 - 194042 853 277 aa, chain - ## HITS:1 COG:BS_sacT KEGG:ns NR:ns ## COG: BS_sacT COG3711 # Protein_GI_number: 16080858 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus subtilis # 1 274 1 272 276 186 38.0 5e-47 MKIKKVLNQNAVLVLDEGQEKVAVGKGVGFNKTKNDVLSRQLVERMFVMEPEGLKKLQVL LSQIEDKYFLASEEIIQHAETVLGEKLNEHINIGLSDHIAFAAENIQNNIIVRNKLLSEI EILYSEEFAIAQWAVEYLTQTLEIPFSYDEAGYIVIHIHSARSGRTDNSKSIREVTIVSE IIHLIEQELAIDIHDDKNSLSYSRLVNHLRLFIHRFQQNQYAVLDEEILEVVKKKYAESY EISKKVQVLLMRNFHYQVPNEELGYLSIHIERLRMTK >gi|284795522|gb|ADDQ01000027.1| GENE 193 194747 - 195949 950 400 aa, chain - ## HITS:1 COG:BH3021 KEGG:ns NR:ns ## COG: BH3021 COG0303 # Protein_GI_number: 15615583 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin biosynthesis enzyme # Organism: Bacillus halodurans # 2 384 8 396 423 188 33.0 2e-47 MIELEEAREKMTQHMKSQCETEEVALLDSLGRISGETIFAETAIPHFPRAGMDGYAVRAV ETRGATAESPSCLKVVGSLVAGDSMFYCNQTNNCAIKITTGAFIPTDFDAVVPQEWTDFG QDHVKIFRSVTAGQNYAEIGEDIAFQQKILAKHQQINSRMIGLLAMQGIDKVVVLKRMKV GILATGSELVSLEEPLSVGKIYNSNLYMLAAFVKASGNEVIHLDHCSDDPEELAKRLIEI SPKLDVLITCGGISVGEKDNLPLAIKRIGGTELFHFVNMKPGTPVMGSKFQETLILSVSG NPFAAMVNLHLFYWTLLATFFNCVELNLKERTVILAHELAPSRLRRFYRSKEIDGTVNLV TKSHLSSNLSNTLETNCLLEQPAGVLLKKGALVKVYYWQT >gi|284795522|gb|ADDQ01000027.1| GENE 194 195967 - 198687 2946 906 aa, chain - ## HITS:1 COG:AGl347 KEGG:ns NR:ns ## COG: AGl347 COG3383 # Protein_GI_number: 15890285 # Func_class: R General function prediction only # Function: Uncharacterized anaerobic dehydrogenase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 7 905 30 946 973 747 42.0 0 MKTKLHTQTVTLSIDNQEVTVPKGTTILEAAKGLGVEIPTLCHLKELAPDGSCRMCVVEV EGGRRGGLTTACTAHCQEDMVVSTHSEKVADSRRFILDLLLSNHKLECFSCGKNGDCQLQ QYALDYGIDATSFTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIA NRGFETKMMPSYGQAFDQSICESCGNCVSSCPTGALTAKDTKEYRKWETQKIPTTCPHCG TGCQMNLLVKNNRLVGVEPLDGPANKNLLCVKGKFASYKFVGSGDRLTEPLIKRNGIFEP ASWEEALTLVSSKFNEIKAENGPDALAGFSCSRATNEDNYVFQKMVRAAFGTNNVDNCAR VCHSASVHGLAQTLGSGAMTNPIADITEDVDMILLVGSNPEEAHPVIGAQIRQAIQRGTQ VVVVDPRKINLVKDSALHLQVQAGTNVAFANGMMHVILKEGLADRHFIEERTEGFLDLEK MVADYTPEKVAEICHIHPEDLIQAARMYAKAEKAPIIYCLGVTEHSTGTEGVMSMSNLAM LVGKVGKPGCGVNPLRGQNNVQGACDMGCMPYDFPGYQKVNNPEVIDKFEKAWHVPLNRN TGLTSTKVLPAATAGNVKGLYIFGEDPIVTDPDTGHVRQALESLDFLVVQELFMTETAAY ADVVLPGISYAEKDGTFTNTERRVQRVRKAVEPRGQAREDYEIFCEVMTRMGYPCAYESA KEIMEEISAVTPSFGGINYERLEKESLQWPCRSLTDPGTPIMHVGSFARGKGLFKAIPYK QAQELPDEEYPYLMSTGRMLYHYNTRAMTGRTEGINQIANHSYIEINAVDAQALGIQEGD KVEVHSRRGKIETYAAVGNRVFPQEVFMTFHFPDGNVNEITNAVFDDIATIPEYKVCAVA IKPVNK >gi|284795522|gb|ADDQ01000027.1| GENE 195 198690 - 199988 1037 432 aa, chain - ## HITS:1 COG:TM0228 KEGG:ns NR:ns ## COG: TM0228 COG1894 # Protein_GI_number: 15643000 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit # Organism: Thermotoga maritima # 8 417 112 516 545 352 44.0 6e-97 MLKRNQPMLLERMGKMQSATDVSEYCKYDGFDGLKRAISLSDEEILNELDIAHLRGRGGA AYPLGKKWRHLYHAKGTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSAK AGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENSA LLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADGG GTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRALKFIHFGGQSGPIGAVA TLRDCLYSYEDLWAHDLSVSSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGTT RILELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFPEEFETTA ETEIYATSKGGW >gi|284795522|gb|ADDQ01000027.1| GENE 196 200000 - 200488 707 162 aa, chain - ## HITS:1 COG:TM0012 KEGG:ns NR:ns ## COG: TM0012 COG1905 # Protein_GI_number: 15642787 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase 24 kD subunit # Organism: Thermotoga maritima # 8 157 25 175 176 84 28.0 9e-17 MCALSLIEKEAIILENDADPQRILNILIELQFASEEGYIDQETAQLVAEHLHLTEARVYE IVSFYAILKTEPQAKYVLKICNSTPCHYTGGAMVAEVLETILEVPENQPTPDGLFMYHSI PCIGACDLGPVIKIKDTVFSQLTEEKIYQLIQHLQNDCYEGL >gi|284795522|gb|ADDQ01000027.1| GENE 197 200476 - 201057 481 193 aa, chain - ## HITS:1 COG:no KEGG:EF1387 NR:ns ## KEGG: EF1387 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 193 1 193 193 356 98.0 3e-97 MAIEVPNMIQIGSTGRNSGKTTLAEALIKQYQEVYPIYGLKIITISGQRGVCQRGTKGCG ICTSITAGYELVEEQETIGNKDTMKLLAAGCQKVFLLKVFQENLAEAIQQFLKAVPAQAL IICESNSLRNVVQPGLFLMMNNQNRQKESAKKVIDKADFCLLSAEIPKELRIYYQGEQLQ VSLKRGNKKECVH >gi|284795522|gb|ADDQ01000027.1| GENE 198 201047 - 201871 756 274 aa, chain - ## HITS:1 COG:lin0912 KEGG:ns NR:ns ## COG: lin0912 COG2116 # Protein_GI_number: 16799984 # Func_class: P Inorganic ion transport and metabolism # Function: Formate/nitrite family of transporters # Organism: Listeria innocua # 1 267 1 268 270 230 49.0 2e-60 MDFFSSEEIVASLGDKAKMKGKLSFVRLCILGIMAGFCIALGYLAFIRITGTAPTEWGSF NNFLGGALFPVGLIALTFVGGELATGNMMVMTLGVLQKKVRVGALCYNWLVVLLTNCLGG FLVAYLFGHIVGLTEGAFLDKTVAVAQAKIADPPLVAFVSGIGCNIFVCLAVYLGALAKS YLGKMFGLWFPVMVFVVCGFQHVVANAFIIPAAIFSQSTTISWWDYLQNTLWVFLGNAVG GSLFMAVPLIFMTKPATVKPRVEKTIQTEELYGN >gi|284795522|gb|ADDQ01000027.1| GENE 199 201890 - 202402 471 170 aa, chain - ## HITS:1 COG:BH3017 KEGG:ns NR:ns ## COG: BH3017 COG0746 # Protein_GI_number: 15615579 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin-guanine dinucleotide biosynthesis protein A # Organism: Bacillus halodurans # 2 169 20 197 198 64 28.0 9e-11 MGFDKALLKIQGQYVILQTAEKLMELFEEVILVTNDSQKFPKAFRKCTIIQDMYLGKGPL GGIVTAMNYTQKAEVFVIACDIPTFSPKLVYQLASKRGQNQVTIFDFEGRQEPLFGFYRC SCLPTFQKQLAQNNYQIRQEFEHLSVKTVQLSKENQLKNVNRKEELSQWY >gi|284795522|gb|ADDQ01000027.1| GENE 200 202603 - 203631 837 342 aa, chain - ## HITS:1 COG:lin2698 KEGG:ns NR:ns ## COG: lin2698 COG0392 # Protein_GI_number: 16801759 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Listeria innocua # 11 332 14 341 357 65 21.0 2e-10 MKGKVKIGLNMLLMIIVLGVIFYVMDNSLSDIFAQLMETSWLVLIAVIFFGVVYQFAEGR SIKEIARYFNKDFTTVDGFFTSCYVAFYRIISFGTGTLLSEIYFYKKKGIPVSKSVGITA LHMIMYKAAVIFLAIIGLIIQFSLFYENAPKMIPFILAGVILTLVIIAALLILSSSLKLQ VLLVKFANRWFKRPKLRDWVDNCNLQIYSLRAAVQTITQDRSALLRIFSWNVFKLLFWYI IPYIVLVENHPNIDLLLVMSFTSFAVILSGVIPTPAGIGPFEFVYLLLFKPLVGNVDAVA SVLLYRFGSFVLPFLIGLVYVAIEKRKSLRIEIEEIKRQTDE >gi|284795522|gb|ADDQ01000027.1| GENE 201 203651 - 203917 240 88 aa, chain - ## HITS:1 COG:MA2252 KEGG:ns NR:ns ## COG: MA2252 COG3326 # Protein_GI_number: 20091091 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Methanosarcina acetivorans str.C2A # 1 68 1 70 90 57 43.0 9e-09 MLQWIVIIYFLVINLVLFSMMGYDKKQAKRGNWRIPERRLLTIGLVGGGLGGLMGQKKFH HKTQKPVFALCYSIGVIAMISCIYLTFK >gi|284795522|gb|ADDQ01000027.1| GENE 202 203996 - 204091 62 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKLQQESKLSVARFLTFLLSTSFILHLIQQF >gi|284795522|gb|ADDQ01000027.1| GENE 203 204063 - 205292 1862 409 aa, chain - ## HITS:1 COG:L60596 KEGG:ns NR:ns ## COG: L60596 COG2195 # Protein_GI_number: 15673792 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Lactococcus lactis # 2 407 3 408 413 536 66.0 1e-152 MYENLLPRFLRYVKTETRSDATSTTTPSTQTQVAFAQTLKKELEELGMSDVIYNETNGFV IATLPSNVEKDVRSIGFIAHMDTADFNAVNVSPQIVENYDGESTIPLDKEGKFTLNTKDF PNLKNYRGETLITTDGTTLLGADDKSGIAEIMTAMEYLINHPEIKHGTIRVAFGPDEEIG VGADKFDVAQFNVDFAYTMDGGPVGELQFETFNAAQAEITIQGKNVHPGTAKNTMINALQ LGIDFHNALPADEVPEKTAGEEGFYHLAAFAGTPEEATMTYIIRDHNREIFEARKAKIKE IQQTLNAPFDEERIKVDLFDQYYNMREVIEKDMSIVEIAKQAMEELSIQPIIEPVRGGTD GSKISYLGIPTPNIFAGGENMHGRFEFVSLQAMEKATNVIIKIAELNAK >gi|284795522|gb|ADDQ01000027.1| GENE 204 205322 - 206440 1246 372 aa, chain - ## HITS:1 COG:SP1609 KEGG:ns NR:ns ## COG: SP1609 COG0327 # Protein_GI_number: 15901449 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 8 130 6 128 265 161 59.0 2e-39 MAVNGKTLIRRFNDYCPEWLAETGDPVGLHIGTLDKPIENVMVTLDVRPEVVAEAIEKQV DLIIAKHPPIFRPVKRLTTDNFQEKMYADLLKHDIAVYAAHTNMDIIDNGLNDWFCELLG IKQTTFLTKTHTVPYKKLAVFVPIDEAPQMREALGLAGAGSQGDYSKTSYSLIGTGRFTP TQGANPTIGEIGQESVVQEAKIEVIFPETKQEQVLAAMLQAHPYEEPAYDVYTIENQSKE FGLGRVGVLDKPVRFSDFVQQVKEAFQLDGLRVIAKDDTKMIQRVAICGGSGEKFYHDAL RKQADVYITGDVYYHTAHDMIAEDLPVIDPGHYIEALCKPKLVELMNQWKQENEWAVSIF ESEANTNPFRFK >gi|284795522|gb|ADDQ01000027.1| GENE 205 206424 - 207140 850 238 aa, chain - ## HITS:1 COG:lin1490 KEGG:ns NR:ns ## COG: lin1490 COG2384 # Protein_GI_number: 16800558 # Func_class: R General function prediction only # Function: Predicted SAM-dependent methyltransferase # Organism: Listeria innocua # 1 232 1 233 234 199 47.0 3e-51 MNENQLSKRLATVGDLIPRGSRLADIGSDHAYLPVALMLENKLSFAVAGEVVEGPYQSAK TQVSKSNLTDKIIVRLANGLDAIEPEDQIDVISICGMGGTLIRDILEAGRKKNRLTGKER LVLQPNIGEPTLRRWLMANDYSIIDETIVEENRKLYEIIVAEKTEQSVSYTDQELLFGPV LIKKQGPVFTKKWHRELKQRKTVLAQLAKASGEHIEKQVKLQQDQQLIEEVLANGCER >gi|284795522|gb|ADDQ01000027.1| GENE 206 207343 - 209985 3462 880 aa, chain - ## HITS:1 COG:lin1539 KEGG:ns NR:ns ## COG: lin1539 COG0013 # Protein_GI_number: 16800607 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Alanyl-tRNA synthetase # Organism: Listeria innocua # 1 877 1 874 879 1128 65.0 0 MKELTSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN PRITNAQKSIRTNDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAF DPEKLYVTVYPKDTEAKRIWRDEVGLSEDHIIDVGDNFWDIGAGPSGPDTEIFYDRGEEF LDIPEDDPENYPGGENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERVVSIIQ DAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGALPSNE GRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKVVRTEE ERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDEGLKVD HAGFETEMEAQRERARSARSKETSMGVQSALLTDIKVESKFVGYTELTHDSELFVIIQGD ALVNEASAGTAELIFAETPFYAEMGGQIADRGYVKNTAGEVVANVVDVKKAPNGQFLHKV EVLAPLAEGQIYQLQVDERMRTRILKNHTATHLLHRALKDVLGEHANQAGSLVAPGHLRF DFTHFGQVTSEELARMEAIVNEKIWEAIPVVTIETDIDTAKNMGAMALFGEKYGKEVRVV NIGDYSIELCGGTHVANTEDIGIFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKE IATLVKSPQLKEVVTKTEQLQQQLRDLQKENEQLAGKLANQQAGDIFKDVKDVNGVRYIA AQVNVKDMNQLRQLADQWKQKELSDVLVLATAQDEKVSLLAAMTKDMNGKGLKAGDLIKA IAPKVDGGGGGRPDMAQAGGKNPAGIADALAEVENWLANA >gi|284795522|gb|ADDQ01000027.1| GENE 207 210331 - 211014 602 227 aa, chain - ## HITS:1 COG:no KEGG:EF1378 NR:ns ## KEGG: EF1378 # Name: not_defined # Def: transcriptional regulator, putative # Organism: E.faecalis # Pathway: not_defined # 1 227 1 227 227 398 99.0 1e-109 MRRILVLTKNILVEQTFQQQLQHLNYEVFCTNCCEETIEHELTFFNYFDAIVLSETLSQN DCLRLLGSLSSLEKPIYRRSQSMCNKREAEIWQERGIIRWLGLKDSLEDIREKIDTVDQS FAEVTAELLDDQVKKIRFTKNEQRFLKILYQHAHEGLDRDQICRLLWQKEPDASTKSQLS FVCKRVKQKFSDAGMNEEIITTSWGKGYQINEQILPYLEQTLFETAQ >gi|284795522|gb|ADDQ01000027.1| GENE 208 211561 - 212910 1471 449 aa, chain - ## HITS:1 COG:L0340 KEGG:ns NR:ns ## COG: L0340 COG0513 # Protein_GI_number: 15672392 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Lactococcus lactis # 4 447 3 445 446 554 62.0 1e-157 MPSFKQFQFQPFINEALAEKGFEEPTEVQEKLIPIIKKGKSVIGQSQTGSGKTHTFLLPL MDKVKPTIDEVQIVITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQLNKLK HQQPHVVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLPEKLQ MLVFSATIPEKLRPFLKKYLENPVIEHIKPKAVISETIDNWLISTKGKNSNQIIYQLLTI GHPYLAIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQYVVAT DLAARGIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAITLYSPADDEAITQIEQ LGVSFKPKEIKNGEIVETYDRNRRTKREKSREELDPTLIGLVKKKKKKIKPGYKKKINWA IEDSNKKKRKIERRQKDRSARKAKKNSSN >gi|284795522|gb|ADDQ01000027.1| GENE 209 212973 - 214154 893 393 aa, chain - ## HITS:1 COG:L188881 KEGG:ns NR:ns ## COG: L188881 COG4767 # Protein_GI_number: 15673730 # Func_class: V Defense mechanisms # Function: Glycopeptide antibiotics resistance protein # Organism: Lactococcus lactis # 1 241 1 236 354 167 43.0 3e-41 MAVYSEPIKWAIIIFPFLAFFISGALLIYEYRKYGSFVWTRAMILYSFVFYLLCAYFLVI LPLPSRAEVAQYTGPTMELRPFHFISGILNETVFSLKDPSTYLPALKQHAVLEPLFNVLL VLPFGVYLRYYFKCSFLKTVLASFLLSLFFELTQLSGLYFIYPRSYRLADVNDLINNTVG GMVGYWLTPLFTFLLPTREEIDATSYEKGQTVSLLRRFFAWGIDWLVIGFVQGLLVFGLN FIPAYKNWATNYPIFSDRMWLFIMVFAVFIVMMKLTNGQTLGKKVVRIRVVETGHEKIRL KALFVRYGYLYFVYGLISIYLANATDLLNSSNRMLQMVSLLLYLFCLILYLLFLINVLLT LIRKKRRLFYEKASHTYTVSTLEVAKTKESAGE >gi|284795522|gb|ADDQ01000027.1| GENE 210 214297 - 214608 355 103 aa, chain + ## HITS:1 COG:no KEGG:EF1375 NR:ns ## KEGG: EF1375 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 103 1 103 103 157 100.0 1e-37 MLQPYFAFGVPLFLLVLYLLFALIHRQTTIHYLRFILLLISTFLMVFSFQVLQESWTINP ETLKDAAYSPQWLWIPLGIGLILTLYNAWHGLRTMIKYKTDKH >gi|284795522|gb|ADDQ01000027.1| GENE 211 214669 - 215007 392 112 aa, chain - ## HITS:1 COG:lin0389 KEGG:ns NR:ns ## COG: lin0389 COG2824 # Protein_GI_number: 16799466 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism # Organism: Listeria innocua # 4 111 3 110 111 174 81.0 3e-44 MTEQLPNCPECGSAYAYEDRGLFICPECGHEWSPTEEVAEEGLVVKDSNGNLLADGDSVT VIKDLKVKGASGAIKQGTKVKNIRLVEGDHNIDCKVDGFGPMKLKSEFVKKN >gi|284795522|gb|ADDQ01000027.1| GENE 212 215121 - 216074 926 317 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B [Streptococcus pneumoniae SP18-BS74] # 1 308 1 306 311 361 59 2e-98 MDVVKEIMAAIKQYETIIIHRHQRPDPDAIGSQVGLAELLRASFPEKNIYQVGGPVEGLE FLAEMDVITDDVYRGALVIVTDTANAPRISDARFSLGDQLIKIDHHPNDEPYGDLVWVNT NASSCSEIIVDFWQQHLAELTMTDNAARLLYAGIVGDTGRFLYPSTSAHTLAVAAQLRTF NFNAADLNRELDQMPLKVAKLAGYIYQNLEIDANGAARVVLPQSILNSYDIVDSETAAIV SMPGKIEDVLSWAIFVEQPEGYYRVRLRSKGPIINTIAKKHHGGGHPLASGANARDAAEI EVIYQEIQAACQEWAQK >gi|284795522|gb|ADDQ01000027.1| GENE 213 216088 - 217407 1329 439 aa, chain - ## HITS:1 COG:lin1611 KEGG:ns NR:ns ## COG: lin1611 COG4109 # Protein_GI_number: 16800679 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing CBS domains # Organism: Listeria innocua # 1 438 1 437 437 488 57.0 1e-137 MATKHDQILKHIEELPIGDRISVRSIAKSLSVSEGTAYRAIKDAENIGLVSTIQRVGTIR IERKLKKHIEKLTFGEVVRIIEGDVLGGSSGLDKVLNKFVIGAMTETAMTRYITPGSLMI VGNRQGVQKLALENGAAVLITGGFETSEEIAQLADRLGMPVLRTTYDTFTVATMINRALS DQLIKKDILLVSDIYTALEKTNYLLTTQTIADYQALSESTHHSRFPVVNKKLRLVGIVTA KDVIGKSEHLTVDKVMTKDPNVVKKMMSVASVSHQMIWDGLEVMPVVEDDLALVGIVSRQ DVMKAMQLVQRQPQIADTISDQISGEVMPVEENGKETTRFRFSVAPQMVNSVGTISFGVL SEIISNVTQRTMLMNQKRNVLIEQVNLHYLRLIQLESELDIRPRILEIGRRSAKLDIEVY LENVIVAKAIVVCQVMERT >gi|284795522|gb|ADDQ01000027.1| GENE 214 217417 - 218091 776 224 aa, chain - ## HITS:1 COG:BH3178 KEGG:ns NR:ns ## COG: BH3178 COG2220 # Protein_GI_number: 15615740 # Func_class: R General function prediction only # Function: Predicted Zn-dependent hydrolases of the beta-lactamase fold # Organism: Bacillus halodurans # 1 222 1 224 226 228 52.0 5e-60 MELIGHGHSCIEIRLNDGTNLLFDPFINGNPLADVSLEDLHPDYILITHGHSDHIGDMLA IAQANKATIIAIAEVATYAQSQGVKAHGMNLGGRYVFPFGSVKFVPALHSSGYEIDGVMT YMGEASGIILEAEDKKIYHAGDTALFSDMRLFAKDKSIDVAFLPIGDNYTMGPEDALQAV SYLNPKITIPIHYNTFPVIQQNPAIFVEQVVGGKVLNPGETILV >gi|284795522|gb|ADDQ01000027.1| GENE 215 218296 - 219729 1396 477 aa, chain - ## HITS:1 COG:CAC3668 KEGG:ns NR:ns ## COG: CAC3668 COG0477 # Protein_GI_number: 15896900 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Clostridium acetobutylicum # 11 472 6 467 486 369 44.0 1e-102 MEKIKSYQEDSEVQKNRWWILVSVAMFTFMSTLDSSIVNIALPTISKEMSVPMNQAEWVV SIYLMVVCACLLLFGKIGDSFGKIKVYRIGTVIFTIGSLLCGFNQSLSFLLFARVVQSIG ASMTMATNSGIITEVFPLNERGRALGAVGAFVSLGAIAGPGIGGLILSNFSWSYIFWINV PVGLVTILIGEKFLPKDITKTKEKIDFPGFACIAIAIMTFFGGIFLGQESGFGSLQSYLL FIIAVIALGLFIMVERKRKSPLIKFAIFKNKIFTLSLLSAVLIFASNFFVNVVIPFYLQD ARKLSASYAGLLMMVFPLLMVVGAPLSGYLTDKIGPGILTFGGLLLLCCTSLMYMFLDMN SPIWYYVIATAIMGLGNALFQSPNNTMVMSSVEKQDLGVAGSMNSFARNLGMVIGIALST TILYRGMSEAYGERVTTYLANRPDIFIVGMRETFFVAFLLCVAAFILTILRFRKTTK >gi|284795522|gb|ADDQ01000027.1| GENE 216 219921 - 220271 377 116 aa, chain + ## HITS:1 COG:lin2607 KEGG:ns NR:ns ## COG: lin2607 COG1396 # Protein_GI_number: 16801669 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 1 100 1 97 107 67 38.0 4e-12 MTLISRIKQLAQSKQLTLAQLERNVGISNGQIRRWDTSSPKVENLLKIADYFSVSLDYLM GRTQQTEINHQAPMTSTQKELHIHITTEELTEEEITQLEEEANRFLRFRKFEMTNS >gi|284795522|gb|ADDQ01000027.1| GENE 217 220610 - 221731 1095 373 aa, chain + ## HITS:1 COG:no KEGG:EF1368 NR:ns ## KEGG: EF1368 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 373 1 373 373 707 99.0 0 MANQKKDSLSTLFSEEVHGPFVTFLFNTHVAHQNVEKDSLVLKNFAKAAKTRFEKKFPEE KWAVFQEKVDALLADASFWRNGTASVSIILSPENTFVQRLDVPVDDQYYVDTIPYLLGLV KDKQFNYHYYLLALNRDSMKLYKVDHTTVTPVELPKDAPTDVVTALGDELTGGNLNFSTQ GSSNGSKEGVAYHSINTKDKEVEIDWVNYYQAVDTFLKDQLDNPEKLPLYLYALPENQTL FKKIAKNPYYDCSISVAASPAQATIQDIRSASEKIAAELTEKETASYNKLLDRKFLDQFT DISPAAADGKISHLFIATSLFVTENNEMSSEEYDRRKLLNTIAYQVIQNGGQVFVLDQKA APDEKSLAAILRY >gi|284795522|gb|ADDQ01000027.1| GENE 218 222029 - 222229 298 66 aa, chain + ## HITS:1 COG:lin1401 KEGG:ns NR:ns ## COG: lin1401 COG1278 # Protein_GI_number: 16800469 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Listeria innocua # 1 66 1 66 66 98 81.0 3e-21 METGTVKWFNSDKGFGFITAENGNDVFVHFSAIQGDGFKTLEEGQAVTFEIEEGQRGPQA TNVTKA >gi|284795522|gb|ADDQ01000027.1| GENE 219 222385 - 223590 1275 401 aa, chain + ## HITS:1 COG:lin1003 KEGG:ns NR:ns ## COG: lin1003 COG1434 # Protein_GI_number: 16800072 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 66 401 10 344 344 208 40.0 1e-53 MQFYGDLTFLGVYLLGLFFIPSWRKKKKEHDWLPWMFGWTVFMFFSYVLYLEIIRGTAFF LIPIAFFGLFALFYFKEKRRLLNGTLFNIFLVVLATYLGITAIRTNNYFLITLAIIALLA IFIALALGLYALIIFLYWNAVVVMRKEGRSLGNLLTLLLAIGLTLLLIYNFFFQSLLPTW LSLPLTIAPFILTYFAFVFYNFLTVSTLYQFNQPKYTQDYIVVLGSGLINGEIVPPLLQA RINKAIQFYKAQNRATLNPPKIVMSGGQGPDELLPESVAMKMYALTQGIPDDDILVEAHS KNTLENMRFSKETMIEDFGNANFQAIFTTNNYHLFRAGLFARMAGLKADGIGAKTAFYFL PNAFIREFIAIVVMYKRRHIIVCGLAAIGMVMLFLTGLIIQ >gi|284795522|gb|ADDQ01000027.1| GENE 220 223607 - 224659 843 350 aa, chain + ## HITS:1 COG:lin0948 KEGG:ns NR:ns ## COG: lin0948 COG0628 # Protein_GI_number: 16800017 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Listeria innocua # 1 332 1 330 348 277 50.0 3e-74 MSLYQKFIQNERLRRFCVLALIIFVLYLSRSMITTILLTFIFTYLAVRLVHFVQRYMKIP TIVIVLLTYALVVFLIYLAITKYVPVLVNQTTQMINSVVDFYQSPHTDTNQVLQFIDQYL EKSNLLSQLQNGASMILRYIQDIGAVGLSFVMSFILSFFFMIEKKQMADFSKLFLKSDFD WFFQDIYYFANKFVNTFGVVMEAQFFIAVVNTVITTLALAIIGFTQLPSLAIMIFILSLV PVAGVIISCIPLSFIAYSQGGLNDVIYILALITIVHLFESYVLNPKFMSSKTELPIFYTF VILLVSERLFGVWGLIVGIPVFTFFLDVLKVKPIRGLKRLPNVKKNSSAE >gi|284795522|gb|ADDQ01000027.1| GENE 221 224679 - 227090 2706 803 aa, chain - ## HITS:1 COG:L10433 KEGG:ns NR:ns ## COG: L10433 COG1257 # Protein_GI_number: 15673552 # Func_class: I Lipid transport and metabolism # Function: Hydroxymethylglutaryl-CoA reductase # Organism: Lactococcus lactis # 393 801 4 409 410 489 62.0 1e-138 MKTVVIIDALRTPIGKYKGSLSQVSAVDLGTHVTTQLLKRHSTISEEIDQVIFGNVLQAG NGQNPARQIAINSGLSHEIPAMTVNEVCGSGMKAVILAKQLIQLGEAEVLIAGGIENMSQ APKLQRFNYETESYDAPFSSMMYDGLTDAFSDQAMGLTAENVAEKYHVTREEQDQFSVHS QLKAAQAQAEGIFADEIAPLEVSGTLVEKDEGIRPNSSVEKLGTLKTVFKEDGTVTAGNA STINDGASALIIASQEYAEAHGLPYLAIIRDSVEVGIDPAYMGISPIKAIQKLLTRNQLT TEEIDLYEINEAFAATSIVVQRELALPEEKVNIYGGGISLGHAIGATGARLLTSLSYQLN QKEKKYGVASLCIGGGLGLAMLLERPQQKKNSRFYQMSPEERLASLLNEGQISADTKKEF ENTALSSQIANHMIENQISETEVPMGVGLHLTVDETDYLVPMATEEPSVIVALSNGAKIA QGFKTVNQQRLMRGQIVFYDVVNPESLIDKLQVREAEIFQQAELSYPSIVKRGGGLRDLQ YRAFDESFISVDFLVDVKDAMGANIVNAMLEGVAELFREWFAEQKILFSILSNYATESVV TMKTAIPVSRLSKGINGREIAEKIVLASRYASLDPYRAVTHNKGIMNGIEAVVLATGNDT RAVSASCHAFAVKEGRYQGLTSWTLDGEQLIGEISVPLALATVGGATKVLPKSQAAADLL AVTDAKELSRVVAAVGLAQNLAALRALVSEGIQKGHMALQARSLAMTVGATGKEVEAVAQ QLKRQKTMNQDRAMAILNDLRKQ >gi|284795522|gb|ADDQ01000027.1| GENE 222 227276 - 228427 1320 383 aa, chain + ## HITS:1 COG:L13187 KEGG:ns NR:ns ## COG: L13187 COG3425 # Protein_GI_number: 15673554 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxy-3-methylglutaryl CoA synthase # Organism: Lactococcus lactis # 1 382 1 382 384 497 65.0 1e-140 MTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAE AILTKEDKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARSFEIKEACYGATAGLQL AKNHVALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVASEPRILALKEDNVMLTQ DIYDFWRPTGHPYPMVDGPLSNETYIQSFAQVWDEHKKRTGLDFADYDALAFHIPYTKMG KKALLAKISDQTEAEQERILARYEESIIYSRRVGNLYTGSLYLGLISLLENATTLTAGNQ IGLFSYGSGAVAEFFTGELVAGYQNHLQKETHLALLDNRTELSIAEYEAMFAETLDTDID QTLEDELKYSISAINNTVRSYRN >gi|284795522|gb|ADDQ01000027.1| GENE 223 228500 - 229267 889 255 aa, chain - ## HITS:1 COG:no KEGG:EF1362 NR:ns ## KEGG: EF1362 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 255 1 255 255 433 98.0 1e-120 MKKHVIVGCLLIVSSMFVSACGNSSDVTTEKTSVTKQVEATRQSTSSSVDQTKYDAIITE AKKLTAEGQYKESEEKLATIPVSDLGKPHYSIVKETVEKLNNQNNEGLKRQEEVAVEKQT KSSPAPTESLKPIPDEFAKWATTYLFYYPRGDQKQAGLIIEANGAVTQTNTNGEIYTGKA EISGASGTILSYDTTSYRPTTQPATKSITPNVKITVTWNNGGGVDVYYGYVSYSQRLALT DGIAVTDGVKEVWLS >gi|284795522|gb|ADDQ01000027.1| GENE 224 229406 - 230008 855 200 aa, chain - ## HITS:1 COG:lin2844 KEGG:ns NR:ns ## COG: lin2844 COG2376 # Protein_GI_number: 16801904 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Listeria innocua # 11 196 11 194 198 194 53.0 9e-50 MELTVQDIQTWLDNYSKVIEEKKDYLSELDTPIGDGDHGNNMARGMAEYKIAFDKKVPTT ITETFKVLSMALISKVGGASGPLYGTAFMNMTKATKDLETISSPEQLKEIVQQGLAGIQM RGKAEPGDKTMVDVWAPVAEVIGTEQFNEEKIEQFAEATKDWVAKKGRASYLGERAIGHI DPGAASSALLFEELVKVINQ >gi|284795522|gb|ADDQ01000027.1| GENE 225 230021 - 231004 1395 327 aa, chain - ## HITS:1 COG:L45677 KEGG:ns NR:ns ## COG: L45677 COG2376 # Protein_GI_number: 15672230 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Lactococcus lactis # 15 327 1 315 316 381 62.0 1e-105 MKKIINEPGKIVEEMLQGIVKSYGNLVHQVEDSRVIARNDSYKQVGLVSGGGSGHEPAHA GFVGDGMLNAAVLGDVFTSPTPDQILTGIQAADQGAGVLLIVKNYTGDILNFEMAKDMAD MEDIHVEMVVVDDDIAVEDSTYTAGKRGVAGTVLVHKILGHHARQGASLEELVSLGEKIV AATKTIGVALKAATVPEVGKPGFTLPEDEIEFGVGIHGEPGYRREKIQPSKELAKELVEK TLSSYEQQPQTVGVLVNGMGGTPLMEQFVFMNDVLTLLEDKGVQVTFHKVGNYMTSIDMQ GLSLTMIDLATKDWQTALESNVTTISW >gi|284795522|gb|ADDQ01000027.1| GENE 226 231005 - 231403 563 132 aa, chain - ## HITS:1 COG:DRB0052 KEGG:ns NR:ns ## COG: DRB0052 COG3412 # Protein_GI_number: 10957457 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Deinococcus radiodurans # 1 127 1 127 133 85 41.0 3e-17 MKADILLVSHSKMITDGIKEMIEQMNASEEITIHSLGGTSDGSLGSDPMKIIDTINEADS DREFLIFADLGSAVLSSELAFDMLEEDQQKHYHLVDAPLVEGAFAAAITAGVSDDLTQIL AEAQNAGKKGWN >gi|284795522|gb|ADDQ01000027.1| GENE 227 231416 - 232555 1402 379 aa, chain - ## HITS:1 COG:gldA KEGG:ns NR:ns ## COG: gldA COG0371 # Protein_GI_number: 16131783 # Func_class: C Energy production and conversion # Function: Glycerol dehydrogenase and related enzymes # Organism: Escherichia coli K12 # 1 372 14 375 380 283 42.0 5e-76 MRKALILPTKYVQGEDELLNLGYFVSTFGKKALLIANPADVDRVRPQLEETAKKFDITFV EGGFSGEVTREETKRLQNVGQKEQADCIIGLGGGKAIDASKVVAEGENLIIVPTIAAQDA PTSHSAVLYHEDGSFDDYAYFKQSPSVVMVDTKVVAKAPTRFLVAGMGDALSTYFEARAT HNSYSRVNASLPMGSREGLTPAASGTYAALAMAKLCWENLQEDGLKAKLACDANVVTESL NKIIETNILLSGLGFESGGLAAAHAIHNGMTVLPGAHSYLHGEKVAFATIAQLVLEDAAK DELEAVLDFSASVGLPLTLSDIGVDEITYEEALEVAKIACIPEESIHSMPFPIVVEEVAN AIIVADKVGQEYKTRHKLD >gi|284795522|gb|ADDQ01000027.1| GENE 228 232717 - 233703 865 328 aa, chain + ## HITS:1 COG:lin1114_1 KEGG:ns NR:ns ## COG: lin1114_1 COG4936 # Protein_GI_number: 16800183 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Predicted sensor domain # Organism: Listeria innocua # 15 117 13 115 149 107 42.0 4e-23 MTVELKNILDLEKWEKLQESLALSTRLAIILVDYKGRPVTKHSQVQPFCQLVRHSPELSK LCEKCDARGGLEAVRTGQPFIYRCHFNIVDMAIPIIVDDQYVGAIMAGEVLLEDHQEELE QVLTMNDAFIQEFLVTHQELYQQYPVLELADLEKSATLIADLSQYIISEAIKKDYLINTY KQSLQISSRKEELEPLNMIQKDIQQTLLTAQLTPSSAYQTKNKQLQPVLDALWENKSLRL NLQELADLVHLTPTYLSRLLKEEFGIPFSQFYRQLKITWAKQLLLETDKTIAQISEDLGF VEDSYFVRIFKQETGETPLKYRKRKNRA >gi|284795522|gb|ADDQ01000027.1| GENE 229 233818 - 235224 787 468 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 11 468 5 458 458 307 36 3e-82 MVVGDFAIELDTVVIGAGPGGYVAAIRAAEMGQKVAIIEREYIGGVCLNVGCIPSKALIA AGHHYQEAQDSSTFGVTAKGVELDFAKTQDWKDNTVVKSLTGGVGMLLKKHKVEIIEGEA FFVDENTLRVIHPDSAQTYSFNNAIVATGSRPIEIPGFKFGGRVLDSTGGLNLKEVPKKF VIIGGGVIGAELGGAYANLGSEVTILEGSPSILPTYEKDMVKVVTDDFKKKNVTIVTSAM AKEAVDNGDSVTVKYEVNGKEESVEADYVMVTVGRRPNTDDLGLEQAGVEIGERGLIPVD NQGRTNVKNIFAIGDIVPGAALAHKASYEAKIAAEAISGKKVAVDYKAMPAVAFTDPELA SVGMTVAEAKEAGIEAKGYKFPFAGNGRAISLDKTEGFMRLVTTVEDNVIIGAQIAGVGA SDMISELALAIESGMNAEDIALTIHPHPSLGEITMDTAELALGLPIHI >gi|284795522|gb|ADDQ01000027.1| GENE 230 235232 - 236851 2127 539 aa, chain - ## HITS:1 COG:lin1046 KEGG:ns NR:ns ## COG: lin1046 COG0508 # Protein_GI_number: 16800115 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Listeria innocua # 1 538 1 543 544 580 62.0 1e-165 MAYQFKLPDIGEGIAEGEIVKWFVKPGDTINEDDTLLEVQNDKSVEEIPSPVTGTVKNIV VPEGTVANVGDVLIEIDAPGHEDNDAAPAAPAQEQTPAQPAAVPTTEAAGGFFQFKLPDI GEGIAEGEIVKWFVKAGDTINEDDSLLEVQNDKSVEEIPSPVTGTVKNIVVPEGTVANVG DVLVEIDAPGHNSAAPAAAAPATDAPKAEASAPAASTGVVAAADPNKRVLAMPSVRQYAR EKDVDITQVTATGKGGRVIKADIDAFVSGGSQAAPATEAAATEAAPKAEAAAPKAAPKAF TSDLGEMETREKMTPTRKAIAKAMVNSKHTAPHVTLHDEVEVSKLWDHRKKFKDVAAANG TKLTFLPYVVKALTSTVQKFPILNASIDDAAQEIVYKNYFNIGIATDTDHGLYVPNVKNA NTKSMFAIADEINEKAALAIEGKLTAQDMRDGTITISNIGSVGGGWFTPVINYPEVAILG VGTIAQEPVVNADGEIVVGRMMKLSLSFDHRIVDGATAQKAMNNIKRLLADPELLLMEG >gi|284795522|gb|ADDQ01000027.1| GENE 231 236994 - 237971 1290 325 aa, chain - ## HITS:1 COG:lin1045 KEGG:ns NR:ns ## COG: lin1045 COG0022 # Protein_GI_number: 16800114 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit # Organism: Listeria innocua # 1 325 1 325 325 498 76.0 1e-141 MAQKTMIQAITDALALELEKDENVLIFGEDVGNNGGVFRATEGLQEKFGEDRVFDTPLAE SGIGGLAFGLALQGYRPVPEIQFFGFVFEVFDEIVGQMARTRYRMGGTRNMPITVRAPFG GGVHTPELHSDNLEGLIAQSPGVRVVIPSNPYDAKGLLISSIRSNDPVVYLEHMKLYRSF REEVPDEAYEVPLDKAAVTREGTDVSIITYGAMVREAIKAADSLAKDNISAEIIDLRTVA PLDVETIINSVEKTGRVVVVQEAQKQAGVGAMVVSEISERAVLSLEAPIGRVSAPDTIFP FGQAENIWLPNAKDIEAKAREIVEF >gi|284795522|gb|ADDQ01000027.1| GENE 232 237974 - 239089 1533 371 aa, chain - ## HITS:1 COG:lin1044 KEGG:ns NR:ns ## COG: lin1044 COG1071 # Protein_GI_number: 16800113 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit # Organism: Listeria innocua # 1 371 1 371 371 527 70.0 1e-149 MAKAKKQKPIDFKELMAKVDADFPTFQILDQDGKIVNEDLVPDLSDEELVELMTRMVWSR VLDQRSTALNRQGRLGFFAPTAGQEASQLASQFAMEKEDYLLPGYRDVPQLVQHGLPLRE AFLWSRGHVAGNYYAEDLNALPPQIIIGAQYIQAAGVALGLKKRGKENVVFTYTGDGGSS QGDFYEAINFAGAYQANGVFIIQNNGFAISTPREKQTAAKTLAQKAVAAGIPGIQVDGMD PLAVYAIAKEARDWSAAGNGPVLIETLTYRYGPHTLSGDDPTRYRSKEMDDEWVQKDPLT RFRKYLTDKGLWSEAKEEEIIEKTKEEIKVAIAEADKAPKQKVSDFLKNMFEVQPQTIKE QIAFYEAKESK >gi|284795522|gb|ADDQ01000027.1| GENE 233 239688 - 242297 2733 869 aa, chain - ## HITS:1 COG:lin2836 KEGG:ns NR:ns ## COG: lin2836 COG0474 # Protein_GI_number: 16801896 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Listeria innocua # 17 869 13 856 856 898 54.0 0 MNKKTMDMRKATKDQELRKLALLSERELMMELRTSEKGLSNEDAEKRLEEFGPNEVSAQK PTPAIILFLSAFKDPFVYVLALLMVVSTLTKDFEAAIVMGVMILASVLIAFIQEYRSQKA SLDLKELIENTAAVTREGITKEIPMDEIVPGDIVTLATGDMIPADAVLIWTKDLFVNQSS LTGESMPVEKFVDAGVDRQQTEVSALDMQDLVFMGTDVLSGQGKAIILKTGQHTFFGDIA KNATTQRGKTSFDLGLAKVSKFLLRMVMILFPIVFLINGLTKGAWGEAFFFAIAVAVGLT PEMLPMIVTSNLAKGALSLSKHKVIVKELAAIQNLGGMDVLCTDKTGTITEDRVVLVQHL NPLGDLSDEVLNLAYLNSSYQTGWKNLMDIAVINFYEEHQWKTPFKNVTKIDEIPFDFSR RRLTVVVNADDHQLMITKGAVEEMEEVCTHAQINGEIVPLSSAVREELRRVNVQMNKQGM RVLAVAVKKDVHKEAVYSVEDEKEMTLIGFMGFLDPAKESAVSAIRSLHEHGVNVKVLTG DNDIVAKKVCKDVGIEVSHVLLGSQIEAMTDEELRAQVEETNLFAKLNPMQKSKIIELLQ AKGHTVGFMGDGINDAPALRKADVGISVDTAADITKDASSIILLEKSLNVLESGVIEGRK VFSNMMKYIKITISSNFGNVFSILVASAFLPFLPMLSLQLLIQNLIYDVAQLTIPWDNVD EEELLSPVRWETNGLAKFTVCIGPVSSIFDILTYLVMWFVFSANSLATQHLFQTGWFMVG LVSQTLVVHMVRTRKIPFIQSRASMPVMLSSLGAILLGFLIVATPIREVFDFVKLPANYW PWFFGIIIAYMLTVEVAKRLYIKITKEWI >gi|284795522|gb|ADDQ01000027.1| GENE 234 242773 - 243354 711 193 aa, chain - ## HITS:1 COG:L85237 KEGG:ns NR:ns ## COG: L85237 COG3548 # Protein_GI_number: 15672844 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Lactococcus lactis # 1 187 1 184 188 129 38.0 3e-30 MPKTRVEAFTDAVIAIILTLLILELKIPEKADWSALTQSGHKIIIYLISFITLLIYWNNH HHLFQSVRKIDGRVLWMNNFLILTLTFFPFVTGWVGEHPFSWPPQALYGLVVLGADVAYY LVVRALIQANGPKSEVQRLFGHYPKLTLSIVLNIIALIVGKLVAPIAVLIIDTIVLVMWF IPERKAEIKEILK >gi|284795522|gb|ADDQ01000027.1| GENE 235 243524 - 245137 1588 537 aa, chain - ## HITS:1 COG:L128691 KEGG:ns NR:ns ## COG: L128691 COG0366 # Protein_GI_number: 15673660 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Lactococcus lactis # 9 537 13 544 545 616 57.0 1e-176 MDQWWKNAVGYQIYPRSFKDSNGDGIGDLQGIIEKLPYLKELGVDFLWLNPIYTSPNVDN GYDIADYQGIQPEFGTMEDFQELLDQAHQLGLKIILDLVVNHTSDQHPWFVEAKKSLDNP YREYYLWADATPDRMPNEWQSFFGGSTWTYDAGTKQAYFHVFAKEQPDLNWKNPKVREEI YAMIRWWLDLGIDGFRLDAISHIQKEPWDFKITTNPWAPFMNVKGIEDYMLDLKAIFAEY DIMTVGEASGVSSKKAVEWTNDTGYLNMIFELEHNVREGKPGEERLNILGYKKVMARWQK HLGTEGWNALYVENHDNPRINSILGNETSHSAKAIGTIALLLRGTPFIYQGQEIGMVNYP FQQIDELDAKDSHNHYRLLIENGYDAKQALKEVAHWTRDHSRTPMQWTNQEASSFTSGHP WLAIHPNFKEINVADQETDAQSVLNYYKKLIALRKENPVFTDGQFELLAPNHPSVFAFLR KTTEATALVIVNLSGEKCQFDLPNKLLGRKWQQLLGNQDFTVKKRMQLAPYQAGVFQ >gi|284795522|gb|ADDQ01000027.1| GENE 236 245139 - 246764 1657 541 aa, chain - ## HITS:1 COG:SP0342 KEGG:ns NR:ns ## COG: SP0342 COG0366 # Protein_GI_number: 15900272 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Streptococcus pneumoniae TIGR4 # 1 539 1 534 535 689 63.0 0 MEKHWWQEVVVYQIYPRSFKDSNGDGIGDLPGIIEKLDYLETLGIGAIWLSPVYQSPNDD NGYDISDYEAIMTEFGTMADMDRLIEEAKKRKIEIIMDLVVNHTSDEHRWFIEAKKSKEN PYRDYYVWADPASEGGVPNRLKSAFSGSAWTFDEASGQYYLHLFSKKQPDLNWENQQMRQ SVYEMMNFWIDKGIGGFRLDVIDLVGKIPGEEITANGPHLHRYLQEMNAATFGGKELLTV GETWGATPEIAKMYSSPERHELSMIFQFEHMSLDQQPGKEKWDLQPMEVAKLKQVFAKWQ TELGNDGWNSLFWNNHDLPRMISRWGNDQEYWLESSKLFAILLHMMKGTPYIYQGEEIGM TNTPITDIREARDIETINMYHEYLEKGYSKEEILLKINTKGRDNARRPMQWTAEKNAGFT TGTPWIDVNPNYQTINVAAALADKNSLFYTYQEMIRLRKEHPLIVWGNFELLETVDEVIS FYRTYGEERWLVVTNFSDKVQPFSADVSVEQVMIENMPTDVTALADYSLAPWQAFVVKVS Q >gi|284795522|gb|ADDQ01000027.1| GENE 237 246792 - 248558 1906 588 aa, chain - ## HITS:1 COG:L128694 KEGG:ns NR:ns ## COG: L128694 COG0366 # Protein_GI_number: 15673664 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Lactococcus lactis # 1 587 1 584 584 709 57.0 0 MNTAAIYHRPESEFAYLYTEETMHIRLRTAKGDIASVQLVQGDPYLLGKEKWYQQSLTME KLVSTELYDYWFIALSAKFKRLSYAFTLVGTDGLTAFYGEHGIYPLEEKYLEMANNYFRM PYFHEVDRFKAPEWVKETVWYQIFPERFANGDPANDPEGTLPWGSKRPDRQDFFGGDLQG VLDHLDYIEDLGVNGLYFCPIFEAFSNHKYDTIDYLKIDPAFGDGAIFKRLVEECHRRGI KIMLDAVFNHMGDTSPQWQDVLKNGQDSIYADWFHVNEFPASYEESADFEEASNITYDTF AFTPHMPKLNTANPEVQAYLLEIARYWIEEYDIDAWRLDVANEVDHAFWKKFRQTCDDAK KDFYILGEIWHSSQSWLQGDEFHAVMNYAYTDAIMGYFVKQELSLEKMLSEMNNQLMLYR QQTNQMQFNVLDSHDTPRLLHETKEDKELMRQVLAFTYIQPGVPCLYYGDEIGMTGDMDP DCRRCMVWEENQQDLDLKEFVKSLIALRKKYAAVFSGGTIDWTGTSFETGLIRLACRLEE QTIYGIFNTGQETQFVDRTDREVLLSSSIEIASEQIMVLPKGFLLYQA >gi|284795522|gb|ADDQ01000027.1| GENE 238 248559 - 248633 88 24 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQSFALKCVRVLENTRKATIKGEN >gi|284795522|gb|ADDQ01000027.1| GENE 239 248818 - 250068 1551 416 aa, chain + ## HITS:1 COG:L128695 KEGG:ns NR:ns ## COG: L128695 COG2182 # Protein_GI_number: 15673665 # Func_class: G Carbohydrate transport and metabolism # Function: Maltose-binding periplasmic proteins/domains # Organism: Lactococcus lactis # 4 415 3 410 410 279 41.0 9e-75 MKANWKKILMGGILLSASAVLLTACGGAEKTKAENESGSANKAAGDVKLWVDTEYMGVFK KVVADFEKENPNIKVNLTAGNSADAKKDIAKDPKAAADVFMMPHDQIGQMAEAGLIYPNT KYEKEVKENNIDSAVAGVTWKDKVYAYPYAVESQVLYYNKDTYSPEEIKTWKSLTEKGKI GTNFGEDGANYIFGPLFMSNGDYLYGENGEDPKGTNFNNQQGIEVLQWIADQKNNPGVIQ SNTEALSNLGSGKTDAFLSGPWSKNDVEKALGDKMGAAAYPTIDFGNGEKQMKAFLGVRS FAVNQQTQAPLAAMTLANYLTSEKAQMTYFKEIGFVPSNKKLQTNEEITQDTVAKAILEM AQPTHSVVMPKIPEIVSFWPAMDAVINDTYKGNIKPADYQAKLDKLVQDTSKEAKE >gi|284795522|gb|ADDQ01000027.1| GENE 240 250154 - 251497 1061 447 aa, chain + ## HITS:1 COG:SPy1295 KEGG:ns NR:ns ## COG: SPy1295 COG1175 # Protein_GI_number: 15675248 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Streptococcus pyogenes M1 GAS # 10 447 11 450 453 541 67.0 1e-154 MFKKKKAQTSFREVFKKGDFATKLSFLVMGAANFANKQWLKGIIFLTAEIGFIYWLIRNG FHALMMLGTLGTQQQGLVYDDSLGIEVLKEGDNSMLLLLFGIAAILVCLSLIILYVINLK SARHLYELKTAGKKIPTTMDDLRSLLNERFHATLMTIPLLGVLFFTILPLLYMISIAFTN YDHNHLPPKNLFTWVGLANLGNVITGDMASTFFPVLGWTLIWAVFATATCFFFGIILALL INTKGLKYKAFWRTIFVITMAVPPFVSLLIMRNLLNGSGPINALLLNWGLIDSSIPFLTD PNWAKLTIIVVNMWIGIPATMLISTGIIQNLPEDQIEAARIDGANKWQIFKSITFPQILF VMTPALIQQFIGNINNFNVIYLLTGGGPANSNFYGAGSTDLLVTWLYKLTVDTMDYNLAS VIGILIFILSAVFSLIAYTRTNSFKEA >gi|284795522|gb|ADDQ01000027.1| GENE 241 251501 - 252364 655 287 aa, chain + ## HITS:1 COG:SPy1296 KEGG:ns NR:ns ## COG: SPy1296 COG3833 # Protein_GI_number: 15675249 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type maltose transport systems, permease component # Organism: Streptococcus pyogenes M1 GAS # 8 286 2 278 278 327 67.0 1e-89 MAKAKSYQKKQRTALTSVYIILTILAVFWMFPIVWIILTSFRGEGGAFVPYIIPKTFTLE NYKVLLTNQTGNFPFVRWFLNTLFVSIASCLLSTFITIAMAYALSRLRFRLRKPFLKVAL VLNMFPGFMSMIAVYYILKALNLTESLFALILVYSAGSALGFYIAKGFFDTIPMALDESA MIDGANKWQIFTKITLPLSKPIIVYTSLTAFMGPWMDFIFAKVIMGDKVENYTVAIGLFS MMTKSTANSLFMAFTAGCVLIAIPITILFIVMQRFYVEGVTSGSVKG >gi|284795522|gb|ADDQ01000027.1| GENE 242 252402 - 252890 538 162 aa, chain - ## HITS:1 COG:no KEGG:EF1342 NR:ns ## KEGG: EF1342 # Name: not_defined # Def: MarR family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 162 1 162 162 252 100.0 3e-66 MDKEKHSSNLDISVFTEIFSYMSQLLFKDLDLEDLKLTKLDMLILLIVATNEGISMTELA NQVGTSKVQVSRSIAGLEERAIVQRRHNQENRRVVNVYTTKEGEKLFKQKENQVKQQLSE TLSVLSLEDYQEVNQHFLAVMKILSNYQALRRKTCKENNAKK >gi|284795522|gb|ADDQ01000027.1| GENE 243 253036 - 255375 2431 779 aa, chain + ## HITS:1 COG:L119891_1 KEGG:ns NR:ns ## COG: L119891_1 COG1136 # Protein_GI_number: 15672696 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Lactococcus lactis # 1 287 3 289 290 232 42.0 3e-60 MLELKEIKKYYTVGGTTTKALDGVSVAFRKQEFVAILGPSGSGKTTMLNVIGGLDNYDSG DLIINGKSTKNFKEADWDAYRNNSIGFIFQSYNLISHQGILDNVELGMTLSGISKAERRQ KAEDALIRVGLKDHIHKKPSQLSGGQMQRVAIARALANDPDILLCDEPTGALDSETSLQI MALIQELSKEKLVIMVTHNPELAHEYADRIIEFSDGQIRHDSRPHIEHEKKEPFELKRTK MKFTTALRLSFNNIRTKKGRTFLTAFASSIGIISIAIVLSLSTGFQKQIDKTQSETLAQF PITISKIATDQDPESFNNQDKKGTFPKEKEVTAKISDADRAQHTNLIDQKFIDYVNHIDP ELSNNIGYTRLVNMNLLREINGKAQAVKFSNDAPDGQSNAMTSMMAAQTGVGVSAFPKQL ENGKNNFLKDNYSLLEGNYPEKETDVVLIVDSNNTTNINALKNLGFDVKDNQKIAFSDIV GTKMKLANNNAFYTKLPTGNFIPNQDLQAVYDNPENTELTISGILRIKDSSTMNLLAPGI AYSDALSTNMIAKNKTSDIVKAQEASNTNVMTNETLDASAKENLLSYLGANEIPSSIMIY PNDFKSKDKILDYLDAYNKGKDKKDQIIYSDLAGTMTRLTGGLMDAITYVLIAFAGISLV TSMIMIGIITYTSVIERTKEIGILKALGARKKDITRVFDAETAILGVASGILGVVIAFLA TFPINAVLYNLTDLENVATLNPIHGIILIVISTILTMIGGHIPARMAAKKDAAVALRAE >gi|284795522|gb|ADDQ01000027.1| GENE 244 255412 - 255495 86 27 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKLPRFLLLSIHNHLVYGGFIKITNKK >gi|284795522|gb|ADDQ01000027.1| GENE 245 255494 - 255994 583 166 aa, chain + ## HITS:1 COG:no KEGG:EF1340 NR:ns ## KEGG: EF1340 # Name: not_defined # Def: pheromone cAM373 precursor lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 166 1 166 166 288 99.0 4e-77 MLKKPFLLFFSLLGAIFILASCGIGKDAVTDTKYKVSLQQAAEIYEKEAGNSKPLVNVQF DTEPASDYSYIFTNETETLYVNPETGKVTKNTEANQLGENETAFSAAEVKELGAVNDVLA KAKKEVGGLSPRILTWKLTKNNNKLVYTVDVKTTTADEKVTLDANK >gi|284795522|gb|ADDQ01000027.1| GENE 246 256191 - 256652 645 153 aa, chain + ## HITS:1 COG:no KEGG:EF1339 NR:ns ## KEGG: EF1339 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 153 1 153 153 286 98.0 1e-76 MVYTVDFKEVATLGLESSPVAPALAGLRANEARYFWNKYKHRFTTVPASEAPETLTWIEK ILLERALHFPYKPLEISSFTLDGIKMAYVFYENGLAVNVMYTLAEEGKRAVGFKLSDGMA IPAEFEGKFKFARQKSKLAGTIRGSYFVIKGTY >gi|284795522|gb|ADDQ01000027.1| GENE 247 256695 - 257609 632 304 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 1 303 1 306 306 248 43 2e-64 MYDVIIIGAGPAGMTAALYASRSNLSVLMIERGAPGGQMNNTAEVENYPGFDSIMGPELA YKMYENVEKFGTENAYGIVMSIEDHGSYKEVICDDKSYEAKAVIIATGCEHRKLGVKGEE EFAGRGVSYCAVCDGAFFKNKRLVVVGGGDSAVEEAIYLTQFASEVVIVHRRDELRAQKI IQDRAFANEKISFVWDTVVEEIVGNEMVVTGVKARNVKTDEVSEIEANGVFIYVGLDPLT EPFKKAGITNEAGWIETDQEMRTKIPGVYAIGDVREKTLRQITTAVGEGGIAGQQVFNYI EELK >gi|284795522|gb|ADDQ01000027.1| GENE 248 257778 - 258209 342 143 aa, chain - ## HITS:1 COG:no KEGG:EF1337 NR:ns ## KEGG: EF1337 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 143 1 143 143 265 96.0 3e-70 MLQKYLEILTRDEAIFRKKPDGTEVNYFLFPEFEIHINSLPGKTVQGWHKHHEIEEVLLV QSGKVKIEEVENQQIVSRICAEGELIRMHNSLHRISNPDTLSASFTVFRFVPQGQNQQEC IKNDKEEFSDAAVQRLLKINDSL >gi|284795522|gb|ADDQ01000027.1| GENE 249 258856 - 258924 135 22 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNLSGRIQIKISESISIQINIE >gi|284795522|gb|ADDQ01000027.1| GENE 250 259028 - 259735 983 235 aa, chain - ## HITS:1 COG:L0151 KEGG:ns NR:ns ## COG: L0151 COG2188 # Protein_GI_number: 15673419 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 3 235 4 235 235 264 56.0 1e-70 MVQNIPIYIQIHDKIKEDIEKGVWSIGDRLPSERELALKFDVSRMTLRQAIQTLADEGIL ERKIGSGTYVARKKVQETMTGTTSFTEITLSQNRVPSSRTVSYFVAKPSSSEMEKLQLGP EDSILRMERIRFADDIPICFEVASIPYSLVSQYGKSEITNSFYKTLEAKSGHKIGHSNQT ISAVQASEQIAEYLEIKRGDAILRVRQVSYFENGLPFEYVRTQYAGSRFEFYLEK >gi|284795522|gb|ADDQ01000027.1| GENE 251 259941 - 264188 3776 1415 aa, chain - ## HITS:1 COG:L104115_1 KEGG:ns NR:ns ## COG: L104115_1 COG1924 # Protein_GI_number: 15674220 # Func_class: I Lipid transport and metabolism # Function: Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) # Organism: Lactococcus lactis # 2 633 4 634 634 909 70.0 0 MVMRAGIDVGSTTVKLVFLNKQNQPIFTKYERHFSDVKAATERILKEGLSRIGADQPVTM SITGSGGMGLAEVLGIPFVQEVIACTRTVETIIPETDVAIELGGEDAKITFFDGALEQRM NGSCAGGTGAFIDQMAVLLKTDANGVNELAKNYQTIYPIASRCGVFAKTDVQPLINEGAA KEDIAASIFQAVVNQTIAGLAAGRKIKGKVAFLGGPLFFMSELRKRFVETLAIQPEDVIF PEQPQLFVAMGAALYSEDAAECTLEELIQRLVNSQATDLQPSDTLPPLFNSAEDLADFRE RHAQAQAKEKPLSQHTGVTFLGIDAGSTTTKVTLIDEDGHLLFSFYGNNQGQPLETTMTV LKSLYQQLPEEVFIGKAAVTGYGEQLIKNALKVDIGEVETMAHYKAANHFQPGVDFILDI GGQDMKAMTIKNGVLSSIQLNEACSSGCGSFIETFAQSLKYNVKDFALAALESQAPVDLG SRCTVFMNSKVKQVQKEGASVGDISAGLSYSVIKNAIYKVIKVRRPEELGEKIVCQGGTF YNEAVLRAFEKISGREVVRPSIAGLMGAYGAALIALDAYEIGEETTLLSLEELAAFTSEK EFTHCGLCENNCQLTVTVFSDGRQFITGNRCERGARIKIKREERKVNLVDYKYRKLFKYR PLRENKAFRGRVGIPRVLNMYENYPLWHTFFTDLGFRVELSPRSNKQIYEQGLETIPSDT VCYPAKMAHGHIQALIDAQVPIIFYPGVVFEQQETVEADNHFNCPIVQSYPDVIRNNVDA IREGQVDYRNPYLNLANETAVAKVLAENFADLGISLEEIQTALHHGYQELAAFKKEIQEK GEETLAMLTEKGQRGIVLSGRPYHLDPEINHGIAEVITQEGFHVLTEDSISHLGDVQNLR VVNQWVYHSRLYAAAKVVAKTKNLELVQLNSFGCGLDAVTTDQVEEIMDRSGKIYTVLKI DEGANLGAIRIRLRSLKAAVNEREKQQFVPHMQMEEPEKIVFTKQMKKTHTLLLPMLSPI HQSGLVDVALQASGYHVVCLPAQDKEAVNVGLKYVNNDACYPAIISIGQLVEALESGQYD LDNVSVLMTQTGGGCRATNYIPLLRKALNDAGFSQVPVVSVSMGNKGVESNPGFKFTLPM IKRLVVAFLYGDLFERVVYRTRPYETEKGMVDQLHQDWLKRVEANVRNGSLTQFNHFMKK IIRTFDEIPLQEIKKPKVGVVGEILVKYSPTANNDIVRLLEEEGAEAVVPDIVGFMNYSL YNQIWKYENMGMSKQSKRLAEFAIKIIELVEKPMDKALRKSVRFDGIHSIYDMAADASKI LSIGNHTGEGWFLTAEMIELLKHEVNNIVCMQPFGCLPNHIVGKGVVKELRRQYPQANIA AVDYDPGVSLVNQLNRIRLMMATANKLLKEENVKR >gi|284795522|gb|ADDQ01000027.1| GENE 252 264367 - 264975 493 202 aa, chain + ## HITS:1 COG:L108801 KEGG:ns NR:ns ## COG: L108801 COG1309 # Protein_GI_number: 15674221 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 202 1 202 204 198 48.0 6e-51 MAKKTDLRVQRTRKMIIEAFFKLVETKGYEAVTIQDIADEAMINRATFYAHFKDKQHLYD AIFTFTLSAFTAILDSQQLVNGNRVRVKHIEELLTQLYINIQENKSFFLTIMDNNFNEHF RKRLAEIIEEKYATIFSQLRITENDIDVPIDFVIEYMTSIFIGTLHWWITSETDMTPNHL AQLVIKLVGNGHLTVLGIELEK >gi|284795522|gb|ADDQ01000027.1| GENE 253 265031 - 265210 230 59 aa, chain - ## HITS:1 COG:no KEGG:EF1325 NR:ns ## KEGG: EF1325 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 59 1 59 59 93 100.0 2e-18 MNFKEKITEMVENVYDLARDGKYDVKVDLIPRKKGNIKSGVKVTSSRNTAHNIKWRSKN >gi|284795522|gb|ADDQ01000027.1| GENE 254 265445 - 265555 123 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEESGFEPLNPKERIYSPSRLATSLFLQKVIVAVTT >gi|284795522|gb|ADDQ01000027.1| GENE 255 265623 - 265856 365 77 aa, chain - ## HITS:1 COG:no KEGG:EF1324 NR:ns ## KEGG: EF1324 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 77 1 77 77 117 98.0 1e-25 MSKKNKDIEVRVEEEKAQYNGANVLMNKLFIGKKEIGRVIPQNDKKFIIEIDGKQEGTAK NLDEAFEIIIRQWNLSE >gi|284795522|gb|ADDQ01000027.1| GENE 256 266003 - 267472 2231 489 aa, chain - ## HITS:1 COG:BS_yuaG KEGG:ns NR:ns ## COG: BS_yuaG COG2268 # Protein_GI_number: 16080153 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 473 3 486 509 532 68.0 1e-151 MGILLPIIIAVLVLLMLLIVFVSKYQTAKPDEALIISGSYLGSKNVHVDEGGNKIKIVRG GGAFVLPVFQRSNRISLLSSKLDVSTPEVYTEQGVPVMCDGTSIIKIGSSVEEIATAAEQ FLGKTTEELENEAREVLEGHLRSILGSMTVEEIYQNRDKFSQSVQEVASVDLAKMGLVIV SFTIKEVRDKNGYLDSLGKPRIAQVKRDADIAEAEALKETRIKKAEAEKESQQAELQRQT EIAEASKEKELKLALYKQEQDIAKAKADQAYNLESARAQQHVVEQEMEVKVVERQKQIEL EEKEITRREKQYDSEVKKKADADRYAREQEALAQKAREVAEAEAERFKVEALAEAEANKT RLTGQAQAEAILARGAAEAEAKQKIADAFKEYGEAAVLSMVMEMLPQLMKEAAQPLGNID KISVVDTGAGGENSGANRITNYATNLLAGTQETLKETTGLDVKELIENFSKKGTSNSVNY HATEGSEKE >gi|284795522|gb|ADDQ01000027.1| GENE 257 267489 - 268013 600 174 aa, chain - ## HITS:1 COG:no KEGG:EF1322 NR:ns ## KEGG: EF1322 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 174 1 174 174 303 99.0 2e-81 MLEGLPLETVYFYALVGSAVLAFLLIIFGDVFNFDGPVDPMLIIPWIAFTSLFGYLGEEL TAVNSWLILIVSGILSTIIVFFLNFYVLVPLKNSEATISISEKDMEGRVATVITPIPVQG MGEIQLKSVTGSLSRPAAFYVPQEVAAPRGSEVLIIELKERVCYVIPYEGSLKI >gi|284795522|gb|ADDQ01000027.1| GENE 258 268206 - 270842 2583 878 aa, chain - ## HITS:1 COG:L111162 KEGG:ns NR:ns ## COG: L111162 COG0577 # Protein_GI_number: 15673086 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 8 876 7 894 896 583 37.0 1e-166 MKKTALIKTSLREIRQSTTRFLSIMGIIFLGVMVFVGLKATGPDMIKTANNYYQKEQLPD ARIISTMGLEKKDLTTLQSLKDVETVVPRYTIDATIGPQNNAVKLFGYRKNQAGSVNYQV VDGRLPKQTNEIALDTLAKTRYDYKMGDKITLNDAAIKEKGLTQTHFTVVGFINSPEYID NTSRGTTTVGSGTLNFFGVVSEKAFDSQRYPELLISFRSLKHQNTYSSDYEKKREQALNQ VKEALKNRPEEQVAALRDSAQPDINQGRQSLETGKQALAQLEQQPGIPAEMLEKQKDELA KQEQLLAEKQTELANLKAPTYYYFTREDNPGFSEYQDNADRISSLATLFPLFFFLIAALV SLTTMTRMVEEKRMEIGSLKALGYRNREIASIFITYATVASLTGALLGLAVGYYLFPKII FDAYGQMYNIPDLVTPWYLNYSLWGIIVALACTVGAALVTLRIDLLSTPATLLRPKAPKA GQRILLERIRPLWQRMSFIQKVTARNLFRYKRRMLMTVIGIAGCMGLLIVGFGLRDSIVD VATIQFNKIWHYQAVVTFKEQTTPEETKEYQETLRKLDGLNKTIPLYSEIFKTKGKGAPT QNITLYVPQDPSKMAEFQLFNDRVTGEKYSLNDDGVIINEKLAKLFGYKVGDQLNLENSD NQTYHVKIAAIAENYTGHFVYMTPKLYQTMTKQKPEYNTEFLLFDKKLSSKQETSIGEAL TKQPKVLNITFLTAMKGSFDDMLKSLDIVIWVLIAVSGSLALIVLYNLTNINVSERIREL STIKVLGFYDREVTTYVYRENIILTFIGIIVGCFFGKILHQYILATVEVDLIMFSPIIHW PSYLYSAVITMCFTLFVMVIMHRKLKKINMIEALKSNE >gi|284795522|gb|ADDQ01000027.1| GENE 259 270852 - 271553 343 233 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 4 218 2 219 245 136 37 8e-31 MAYIEVKNEYKRYQMGETTITANDGISFEVEKGEVAVILGPSGAGKSTVLNILGGMDSCD EGEIIIDGTDIAQFSEKQLTTYRRNDVGFVFQFYNLVPNLTAKENVELASQIVADALDST TVLQSVGLGERLDNFPAQLSGGEQQRVTIARAIAKKPKLLLCDEPTGALDYETGKQILTI LQNTARETGTTVLIITHNSAIAEMADRVIRINDAKVREMTVNDQPKLVAEIEW >gi|284795522|gb|ADDQ01000027.1| GENE 260 271714 - 272373 653 219 aa, chain + ## HITS:1 COG:no KEGG:EF1319 NR:ns ## KEGG: EF1319 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 219 1 219 219 379 99.0 1e-104 MANRKKKPPFNSTIMLIGALTILILGAVGVKVPDALQDLFNVQPQTTTPSSTPAPKGDNP GPIENGKATFSAEELKDNSNGWITYHSLDRLKRATGADALLKPAMVNTGTSANKDIRPAG FISGKANHSRGHLIGRQMGGSGDDPRNLTTLYQNPVNTPYMTKYENQIRAALDRGETVRY RVTPVYNGNDLLAEKIILEAKSLKTNSPIDFSVTILNKQ >gi|284795522|gb|ADDQ01000027.1| GENE 261 272387 - 272773 582 128 aa, chain + ## HITS:1 COG:no KEGG:EF1318 NR:ns ## KEGG: EF1318 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 128 1 128 128 197 100.0 1e-49 MDFEQLKETLPDAKPQTFLQAILSQPQEEDAELTFSEEIDEQFVENCKFLASPETISETD VEHWREQEFLVVAQSLDGDYLAGTLEQTFVIPSSLYKEDIEQFDKQLIDFFIAYENKEIT SAILPKEL >gi|284795522|gb|ADDQ01000027.1| GENE 262 272816 - 273964 1570 382 aa, chain - ## HITS:1 COG:SPy1694 KEGG:ns NR:ns ## COG: SPy1694 COG1820 # Protein_GI_number: 15675552 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Streptococcus pyogenes M1 GAS # 1 382 1 382 382 484 63.0 1e-137 MKTFIFADKFFLKSDVKGPGYLEITDGIFGNYTKDEPQGDVKIIREEGKWIAPGLVDTHI HGYMNHDVMDNDAEGIKVMSEGLLSCGVTSFLPTTLTSSKERLTDVARTIGQVYQEVPGA KIQGIYFEGPFFTEEHKGAQNPSYFGDPDLDTFHEWQEASGGIIKKIALAPERNGVKEFV ETVTDEGVVVALGHSNATLEEADVAVEAGASVFVHAYNGMRGLNHREPGMVGALLTLQHV FSELICDGHHVHPQAAEVLMEKAGHDHVALITDCMMAGGMPDGNYNLGEFPVVVAEGTAR LDTGNLAGSILKLKEAIKNVVDWGIATPAQAIMMASLVPAISCKIDDQCGMIANGRDADF IVLEPTMELAATYLDGVERYRA >gi|284795522|gb|ADDQ01000027.1| GENE 263 274065 - 274892 918 275 aa, chain - ## HITS:1 COG:no KEGG:EF1316 NR:ns ## KEGG: EF1316 # Name: not_defined # Def: Cro/CI family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 275 1 275 275 493 100.0 1e-138 MNSLGAVIKEIRKNRKLTQKMLSEDICSQSVLSRIENNEELPNVLVMQQLCDRLGVTVDQ IMRYKSGDVHVVTYSFEKMAEYFRHKKYQLLLNYLKENRIEEQLYLDTDWQKYYYYLGSC ELFVLNDYEKAIASLRKGLSFTYKADKLNVSDLEIQLISCLGATYGYMGNRVEAERFLSL SIHYFNQLPNERSNAELTKIFFNYADFLFKNYTEKDAEIYVDQGITWARKKNSYYYLSEL LNLKYLVLMRKNKHEEAERYLNLAQQMKNVESGNL >gi|284795522|gb|ADDQ01000027.1| GENE 264 275070 - 275246 315 58 aa, chain + ## HITS:1 COG:no KEGG:EF1315 NR:ns ## KEGG: EF1315 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 58 1 58 58 93 100.0 3e-18 MAEEKKVHFIWEKTNYSGFVEKEYENSYLIVVANPSPDMEEKYTNRMIISKKACETAE >gi|284795522|gb|ADDQ01000027.1| GENE 265 275312 - 276529 1050 405 aa, chain - ## HITS:1 COG:L162604 KEGG:ns NR:ns ## COG: L162604 COG0436 # Protein_GI_number: 15672142 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Lactococcus lactis # 1 404 1 404 404 670 76.0 0 MRNFKKSDKLNNVSYDVRGPVLEEAERMQEEGIRILKLNTGNPAPFGFDAPNEIVRDMIV NVRDSEGYSDSKGIFSARKAIEQYCQLKKFPNVTINDIYTGNGVSELITMCMQGLLNNGD EVLVPMPDYPLWTASVSLAGGTPVHYICDEQAEWYPDIDDIKSKITSNTKAIVIINPNNP TGALYPKELLLEIVEVARQNDLIIYSDEIYDRLVMDGLVHVPIATLAPDLFVVTLNGLSK SHRVAGFRCGWMVLSGDKSRVKGYIEGLNMLASMRLCSNVLSQQIIQTALGGYQSVDDLL LPGGRIYEQREFIYNAINDIPGLSAVKPKAAFYIFPKIDTAKFDIYDDEKFVLDFLHKHH ILLVHGGGFNWQQPDHFRIVYLPKMEDLKTTADKMREFLSTYKQK >gi|284795522|gb|ADDQ01000027.1| GENE 266 276927 - 277100 86 57 aa, chain - ## HITS:1 COG:no KEGG:EF1313 NR:ns ## KEGG: EF1313 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 57 97 153 153 115 100.0 6e-25 GARYAPPLVERKKAVFHQYQCQSCGEVILRKRRIDTTRYVCGKCHGRLSWQAKKEQI Prediction of potential genes in microbial genomes Time: Sun May 15 12:35:39 2011 Seq name: gi|284795521|gb|ADDQ01000028.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont67.2, whole genome shotgun sequence Length of sequence - 58890 bp Number of predicted genes - 64, with homology - 59 Number of transcription units - 25, operones - 18 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 6/0.000 - CDS 3 - 318 249 ## COG3091 Uncharacterized protein conserved in bacteria 2 1 Op 2 . - CDS 321 - 2513 193 ## PROTEIN SUPPORTED gi|229231694|ref|ZP_04356122.1| SSU ribosomal protein S1P - Prom 2542 - 2601 5.5 3 2 Op 1 . - CDS 321 - 2513 874 ## PROTEIN SUPPORTED gi|87310993|ref|ZP_01093118.1| ribosomal protein S1-like RNA-binding domain protein - Prom 2542 - 2601 5.5 4 2 Op 2 . - CDS 2611 - 3345 789 ## COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases - Prom 3380 - 3439 13.4 - Term 3415 - 3467 14.2 5 3 Op 1 . - CDS 3584 - 4753 1478 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain 6 3 Op 2 . - CDS 4808 - 4930 127 ## EF1309 hypothetical protein - Prom 4950 - 5009 2.5 - Term 4974 - 5025 7.4 7 4 Op 1 29/0.000 - CDS 5045 - 6874 2516 ## COG0443 Molecular chaperone 8 4 Op 2 21/0.000 - CDS 6934 - 7473 813 ## COG0576 Molecular chaperone GrpE (heat shock protein) 9 4 Op 3 5/0.000 - CDS 7528 - 8571 1247 ## COG1420 Transcriptional regulator of heat shock gene - Prom 8621 - 8680 7.8 - Term 8740 - 8783 6.1 10 5 Op 1 . - CDS 8797 - 9981 1214 ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases 11 5 Op 2 . - CDS 10002 - 10118 75 ## 12 5 Op 3 . - CDS 10189 - 12849 2434 ## COG0474 Cation transport ATPase 13 5 Op 4 . - CDS 12818 - 12907 94 ## - Prom 12951 - 13010 2.8 + Prom 13301 - 13360 6.3 14 6 Op 1 9/0.000 + CDS 13385 - 14260 797 ## COG0583 Transcriptional regulator 15 6 Op 2 . + CDS 14284 - 15171 699 ## COG0583 Transcriptional regulator + Term 15172 - 15235 13.3 - Term 15159 - 15223 11.8 16 7 Op 1 2/0.000 - CDS 15233 - 16381 984 ## COG0772 Bacterial cell division membrane protein 17 7 Op 2 . - CDS 16347 - 17522 988 ## COG0772 Bacterial cell division membrane protein - Prom 17548 - 17607 7.0 - Term 17610 - 17670 0.7 18 8 Op 1 . - CDS 17681 - 17941 297 ## EF1299 hypothetical protein 19 8 Op 2 3/0.000 - CDS 17967 - 18308 471 ## COG4817 Uncharacterized protein conserved in bacteria 20 8 Op 3 . - CDS 18312 - 18635 340 ## COG1695 Predicted transcriptional regulators - Prom 18675 - 18734 4.2 - Term 18722 - 18774 17.2 21 9 Op 1 . - CDS 18785 - 19381 676 ## COG3153 Predicted acetyltransferase 22 9 Op 2 12/0.000 - CDS 19381 - 20331 613 ## PROTEIN SUPPORTED gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 23 9 Op 3 . - CDS 20357 - 21277 914 ## COG0130 Pseudouridine synthase - Prom 21307 - 21366 4.9 - Term 21379 - 21425 11.1 24 10 Tu 1 . - CDS 21432 - 22529 1279 ## COG5263 FOG: Glucan-binding domain (YG repeat) - Prom 22562 - 22621 3.3 - Term 22540 - 22590 16.2 25 11 Op 1 . - CDS 22675 - 23070 476 ## COG4824 Phage-related holin (Lysis protein) 26 11 Op 2 . - CDS 23094 - 24863 1865 ## EF1291 hypothetical protein 27 11 Op 3 . - CDS 24896 - 26353 1190 ## EF1290 structural protein, putative 28 11 Op 4 . - CDS 26366 - 27292 1158 ## EF1289 tail protein, putative 29 11 Op 5 . - CDS 27294 - 30227 3244 ## COG5412 Phage-related protein 30 11 Op 6 . - CDS 30217 - 30585 358 ## EF1287 hypothetical protein 31 11 Op 7 . - CDS 30603 - 30962 468 ## EF1286 hypothetical protein 32 11 Op 8 . - CDS 30995 - 31507 896 ## EF1285 major tail protein 33 11 Op 9 . - CDS 31520 - 31912 420 ## EF1284 structural protein, putative - Prom 31942 - 32001 4.5 34 12 Op 1 . - CDS 32157 - 32564 555 ## EF1283 RinA family transcriptional regulator 35 12 Op 2 . - CDS 32584 - 32955 296 ## EF1282 hypothetical protein 36 12 Op 3 . - CDS 32948 - 33040 213 ## 37 12 Op 4 . - CDS 33043 - 33885 966 ## COG1484 DNA replication protein 38 12 Op 5 . - CDS 33904 - 34674 705 ## EF1279 DNA replication protein, putative 39 12 Op 6 . - CDS 34705 - 34839 181 ## - Prom 35016 - 35075 6.3 + Prom 34777 - 34836 11.6 40 13 Op 1 . + CDS 35056 - 35538 604 ## COG1396 Predicted transcriptional regulators 41 13 Op 2 . + CDS 35585 - 36058 537 ## EF1276 hypothetical protein 42 13 Op 3 . + CDS 36094 - 36201 74 ## + Term 36384 - 36442 15.6 - Term 36370 - 36429 15.0 43 14 Op 1 32/0.000 - CDS 36431 - 36781 633 ## COG0858 Ribosome-binding factor A 44 14 Op 2 10/0.000 - CDS 36806 - 39202 2575 ## COG0532 Translation initiation factor 2 (IF-2; GTPase) 45 14 Op 3 8/0.000 - CDS 39215 - 39520 495 ## PROTEIN SUPPORTED gi|29375842|ref|NP_814996.1| ribosomal protein L7A family protein 46 14 Op 4 22/0.000 - CDS 39510 - 39809 492 ## COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination 47 14 Op 5 32/0.000 - CDS 39830 - 41029 787 ## PROTEIN SUPPORTED gi|17988250|ref|NP_540884.1| transcription elongation factor NusA - Prom 41099 - 41158 2.3 48 14 Op 6 . - CDS 41172 - 41645 607 ## COG0779 Uncharacterized protein conserved in bacteria - Prom 41751 - 41810 5.2 - Term 41695 - 41732 6.2 49 15 Op 1 . - CDS 41851 - 42591 625 ## EF1269 cell wall surface anchor family protein 50 15 Op 2 . - CDS 42697 - 43737 987 ## COG4932 Predicted outer membrane protein - Prom 43817 - 43876 9.2 - Term 43820 - 43878 14.9 51 16 Tu 1 . - CDS 43879 - 46275 2062 ## COG0474 Cation transport ATPase + Prom 46263 - 46322 3.5 52 17 Tu 1 . + CDS 46518 - 47435 842 ## COG1039 Ribonuclease HIII + Term 47454 - 47495 5.1 - Term 47431 - 47491 19.1 53 18 Tu 1 . - CDS 47502 - 48674 326 ## PROTEIN SUPPORTED gi|223476703|ref|YP_002580685.1| ribosomal protein L11 methyltransferase, putative - Prom 48840 - 48899 6.7 + Prom 48804 - 48863 7.2 54 19 Tu 1 . + CDS 48932 - 51040 2004 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily + Term 51046 - 51093 10.7 + Prom 51055 - 51114 5.4 55 20 Op 1 . + CDS 51146 - 51847 512 ## EF1263 hypothetical protein 56 20 Op 2 . + CDS 51862 - 52413 515 ## EF1262 hypothetical protein + Term 52419 - 52456 4.4 - Term 52402 - 52449 8.4 57 21 Op 1 40/0.000 - CDS 52451 - 53920 1562 ## COG0642 Signal transduction histidine kinase 58 21 Op 2 . - CDS 53920 - 54639 883 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 54676 - 54735 6.1 + Prom 54638 - 54697 7.1 59 22 Tu 1 . + CDS 54854 - 55633 909 ## COG0561 Predicted hydrolases of the HAD superfamily + Term 55641 - 55691 6.2 60 23 Tu 1 . - CDS 55651 - 55857 215 ## EF1258 hypothetical protein - Prom 56057 - 56116 10.9 61 24 Op 1 12/0.000 + CDS 56089 - 56865 762 ## COG2966 Uncharacterized conserved protein 62 24 Op 2 . + CDS 56877 - 57338 460 ## COG3610 Uncharacterized conserved protein + Term 57346 - 57379 1.0 - Term 57332 - 57366 2.0 63 25 Op 1 13/0.000 - CDS 57371 - 58138 209 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 64 25 Op 2 . - CDS 58135 - 58890 876 ## COG4120 ABC-type uncharacterized transport system, permease component Predicted protein(s) >gi|284795521|gb|ADDQ01000028.1| GENE 1 3 - 318 249 105 aa, chain - ## HITS:1 COG:BS_ydcK KEGG:ns NR:ns ## COG: BS_ydcK COG3091 # Protein_GI_number: 16077546 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 9 103 1 95 150 114 57.0 4e-26 MKESQPVLMTDQALQTLVEKISIVFFQKPFLHQATFNRRLKTTGGRYHLASHHLDFNPTV FLKYGQEELEKVIKHELCHYHLHLAGKGYQHKDKDFKELLAKIGG >gi|284795521|gb|ADDQ01000028.1| GENE 2 321 - 2513 193 730 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229231694|ref|ZP_04356122.1| SSU ribosomal protein S1P [Cryptobacterium curtum DSM 15641] # 651 720 204 272 403 79 60 6e-14 MAEAYNEEVVALLQKELTTYRSKQITTVLTLLNEGNTVPFIARYRKEMTGSLDEVQIREI EERYHYLQNLKKRKEEVLRLIEEQGKLTKELKTDIQKAVKMQQVEDLYRPYKQKRRTKAT IAKEKGLEPLADWLLSLPENADILAKAATFINEEKEVATAEIALQGAHEILAERISDEPK YRTWLRDYMVKHAQYVSVVKDEEKDEKRTYEMYYDFAEPVSKMVPHRVLATNRGEKEDIL KVSLVADEIKINDYFQRQLIGKQATSLAAPYIEAAYLDSYKRFIGPAIEREIRNELTEKA DEQAIAIFGENLRNLLLQSPLKGKVVLGFDPAYRTGCKLAVVDETGKVLAIQVIYPHKPA TAAKREAAGPAFKKIIEDYQVDMVAIGNGTASRESELFVAEQLKAVKRDVFYVIVNEAGA SVYSASEVARKEFPDLQVEERSAVSIARRLQDPLAELVKIDPKAVGVGQYQHDVSQKRLA EQLDFVVETAVNQVGVDVNTASAQLLQHISGLNKTTAQNLVTYRDENGVFTARNQVKKVP RLGPKAFEQAIGFLRIPNGKNVLDNTGIHPESYPVAQAILEKAEIASKELGTAEAIEKLK QLPVNQLATELEVGSETLTDIIASLIQPGRDMRDEMSAPLLRKDVLTMEDLKPGMEMQGT VRNVIDFGAFVDIGVKQDGLVHISKLSPKFVKHPTDVVAVGDVVTVWVEDVDLKKGRISL TMLPRADRKE >gi|284795521|gb|ADDQ01000028.1| GENE 3 321 - 2513 874 730 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|87310993|ref|ZP_01093118.1| ribosomal protein S1-like RNA-binding domain protein [Blastopirellula marina DSM 3645] # 200 650 312 769 1043 341 43 6e-93 MAEAYNEEVVALLQKELTTYRSKQITTVLTLLNEGNTVPFIARYRKEMTGSLDEVQIREI EERYHYLQNLKKRKEEVLRLIEEQGKLTKELKTDIQKAVKMQQVEDLYRPYKQKRRTKAT IAKEKGLEPLADWLLSLPENADILAKAATFINEEKEVATAEIALQGAHEILAERISDEPK YRTWLRDYMVKHAQYVSVVKDEEKDEKRTYEMYYDFAEPVSKMVPHRVLATNRGEKEDIL KVSLVADEIKINDYFQRQLIGKQATSLAAPYIEAAYLDSYKRFIGPAIEREIRNELTEKA DEQAIAIFGENLRNLLLQSPLKGKVVLGFDPAYRTGCKLAVVDETGKVLAIQVIYPHKPA TAAKREAAGPAFKKIIEDYQVDMVAIGNGTASRESELFVAEQLKAVKRDVFYVIVNEAGA SVYSASEVARKEFPDLQVEERSAVSIARRLQDPLAELVKIDPKAVGVGQYQHDVSQKRLA EQLDFVVETAVNQVGVDVNTASAQLLQHISGLNKTTAQNLVTYRDENGVFTARNQVKKVP RLGPKAFEQAIGFLRIPNGKNVLDNTGIHPESYPVAQAILEKAEIASKELGTAEAIEKLK QLPVNQLATELEVGSETLTDIIASLIQPGRDMRDEMSAPLLRKDVLTMEDLKPGMEMQGT VRNVIDFGAFVDIGVKQDGLVHISKLSPKFVKHPTDVVAVGDVVTVWVEDVDLKKGRISL TMLPRADRKE >gi|284795521|gb|ADDQ01000028.1| GENE 4 2611 - 3345 789 244 aa, chain - ## HITS:1 COG:lin0658 KEGG:ns NR:ns ## COG: lin0658 COG0639 # Protein_GI_number: 16799733 # Func_class: T Signal transduction mechanisms # Function: Diadenosine tetraphosphatase and related serine/threonine protein phosphatases # Organism: Listeria innocua # 1 235 1 235 235 194 40.0 1e-49 MKPYVYVISDIHGQADLFDALLTDYDPVEHQLVLIGDLNDRGPHSKACFLKGKELVEQHD AVYLRGNHEEYFLQFLQNPEDWFAGYVRNGGKETIESLLHPGATAEYSPTEMALMIRSRY PELIDFLTKRPLYFEWQHYLFVHAGVDLTMEDWRQTAPKDFLWIREPFHQGKNNTGKTIV FGHTITPMLHGDMQTTDLWQSDGKIGIDGGAIFGGSVHGVIFNEKGIVQDIEYQKRTPAW QPEF >gi|284795521|gb|ADDQ01000028.1| GENE 5 3584 - 4753 1478 389 aa, chain - ## HITS:1 COG:L0272 KEGG:ns NR:ns ## COG: L0272 COG0484 # Protein_GI_number: 15674206 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Lactococcus lactis # 6 380 5 379 379 474 71.0 1e-133 MATKRDYYEVLGLAKGASDDEIKKAYRKLSKKYHPDINKEADAEEKFKEVSEAYEVLSDP QKKAAYDQYGHAGTDPNYGGGAGGFGGFGGGGFSSSGFGGFEDIFDSFFGGGGGRSVDPN APRQGADLQYTIQLKFEEAIFGVEKEIKYNREDTCATCGGNGAKPGTHPETCHKCHGSGT INVERQTPLGRMMSRQTCDVCHGTGKEIKEPCPTCHGTGHEKKAHTVKVNVPAGVEDGQQ MRLANQGEAGTNGGPYGDLYVVFRVEDSDIFDRDGAEIYYDLPVSFVQAALGDEVTVPTV HGDVKLKIPAGTQTGTNFRLRGKGAPRLRGGGNGDQHVKVKLITPKNLNEEQKDALRAFA KAGGQNVTEQQEEGFFDKMKDAFGGKKKK >gi|284795521|gb|ADDQ01000028.1| GENE 6 4808 - 4930 127 40 aa, chain - ## HITS:1 COG:no KEGG:EF1309 NR:ns ## KEGG: EF1309 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 40 1 40 40 62 100.0 4e-09 MKELWYDYNDVKQAENTYSQLVTLIQGVTDNPTRETESNR >gi|284795521|gb|ADDQ01000028.1| GENE 7 5045 - 6874 2516 609 aa, chain - ## HITS:1 COG:BS_dnaK KEGG:ns NR:ns ## COG: BS_dnaK COG0443 # Protein_GI_number: 16079601 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Bacillus subtilis # 1 607 1 607 611 858 81.0 0 MSKIIGIDLGTTNSAVAVLEGGEAKIIANPEGNRTTPSVVSFKNGEIQVGEVAKRQAVTN PNTISSIKRHMGEAGYKVDIEGKSYTPQEVSAMILQYLKGFAEDYLGEKVEKAVITVPAY FNDAQRQATKDAGKIAGLEVERIVNEPTAAALAYGLDKTDKDEKILVFDLGGGTFDVSIL ELGDGVFDVLSTAGDNNLGGDDFDNKIIDYMVAEFKKENGIDLANDKMALQRLKDAAEKA KKDLSGVTSTQISLPFITAGEAGPLHLEMNLTRAKFDELTSDLVERTKVPVRQALKDAGL NPSEIDEVILVGGSTRIPAVVEAVRKETNKEPNKSVNPDEVVAMGAAIQGGVITGDVKDV VLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSKSQVFSTAADNQPAVDIHVLQGERPMAA DNKTLGRFQLTDIPAAPRGVPQIEVSFDIDKNGIVNVRAKDLGTQKEQTITIKSSSGLSD DEIERMVKDAEANAEADKQRKEEVDLRNDADALLFTVDKTLKELEGKVDAEEVKKAEDAR DELKAAIEANDIEQMKAKRDSLNEIVQNLTVKLYEQAAQQQAQENPEAAQGGADDVVDAD FEEVNGDDK >gi|284795521|gb|ADDQ01000028.1| GENE 8 6934 - 7473 813 179 aa, chain - ## HITS:1 COG:SP0516 KEGG:ns NR:ns ## COG: SP0516 COG0576 # Protein_GI_number: 15900430 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone GrpE (heat shock protein) # Organism: Streptococcus pneumoniae TIGR4 # 25 177 24 172 174 132 55.0 3e-31 MSKKEEKQEELQEEMEAVDAAGVSEVEVEATEIENLKAELSEMEDKFLRARAEIANMSNR NKNERELLVRYRSQDLGKKILPSIDNLERAMAIEVSDEQGESLKKGISMVLESITVALKE EGIEEIPAMGETFDPNLHQAVQTVPASEETPADTIVEVLQKGYKLQDRVLRPSMVIVAQ >gi|284795521|gb|ADDQ01000028.1| GENE 9 7528 - 8571 1247 347 aa, chain - ## HITS:1 COG:lin1512 KEGG:ns NR:ns ## COG: lin1512 COG1420 # Protein_GI_number: 16800580 # Func_class: K Transcription # Function: Transcriptional regulator of heat shock gene # Organism: Listeria innocua # 1 343 1 341 345 265 40.0 9e-71 MITERQQNILRLIIQNYTNTGLPVGSKKLMEDGIASSSATIRNDMKALEEYGLLAKTHSS SGRIPSMAGYRYYVDHLLQPTQVEENELRRIRQSFGKEFHEINDIIRQSAEILSELTSYT AFSLGPEVKERKLTGFRMVPLNDRQVLAIIVTDKGNVENQVFAIPAAVSSQDLEKMTQII NDKLVGQPLLTVYHRLRTEIPMILHRYFQTPEGMMNLFDEMLGHAFEEKVFVGGRMNLLD FGIKQDIEQLKSVYSFMQNSDELTHLLNGSATTENPIVFRIGSEIGNNLLEDMSMITATY EVSGHGKGTIALLGPTSMPYSKIFGLVDTFRHELASQLGDYYRFLGN >gi|284795521|gb|ADDQ01000028.1| GENE 10 8797 - 9981 1214 394 aa, chain - ## HITS:1 COG:lin1513 KEGG:ns NR:ns ## COG: lin1513 COG0635 # Protein_GI_number: 16800581 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Listeria innocua # 17 389 13 385 385 425 54.0 1e-119 MTKTNQLSTSTPMFDRSAYIHIPFCEHICYYCDFNKVFLEGQPVDEYIQSLLKEIQLTQA LYPEQEMKTIYIGGGTPTSLSAKQLDVLLKGVREQLTFDDRNEFTVEANPGDLTQEKLQV MKNYGVNRLSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTNVSIDLIYALPGQT LESFRDTLTRALALDLPHYSLYSLILENKTMFMNWVRQGRLQLPEEEIEAQMFDETIEAM EKKGRHQYEVSNFALTGKESQHNLAYWNNDHYYGFGAGASGYLGQTRYKNHGPIQHYLKP LRENHLPIVETEELTRLNQIEEELFLGLRKKVGISKQKFQQKFHEPIEAIYGEVIQRLIK EELLIEEADILRLTKKGLFVGNNVFEAFLLSEKE >gi|284795521|gb|ADDQ01000028.1| GENE 11 10002 - 10118 75 38 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTAPHCCFKWLREFFYGFICHLQLVWLVETFQKERAFW >gi|284795521|gb|ADDQ01000028.1| GENE 12 10189 - 12849 2434 886 aa, chain - ## HITS:1 COG:L85514 KEGG:ns NR:ns ## COG: L85514 COG0474 # Protein_GI_number: 15673239 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 20 886 33 910 910 922 53.0 0 MEKKMRHLGHDYSYKKFAHSEVEKVLQRFGSTWDGIKHQDIEELQERYGRNKIMNEKKAS RLRLFIKSYITPFTLVLLALATISFFTEYVYAAPEEKDVTGVLIMLAMVILSGTMSFVQS VKSSNAVEKLQNMIKVTATVIRDKKQMEIPIEEVVCGDLVQLSAGDMIPADLRLIQSKDL FVSQSSLTGESFPIEKHATHQKDSDQIDTEYDNLLFLGTNVISGTGLGIVIKVGNQTLFG RMASDNGEEQQQTSFETGINKTTWVLIRFMLVITPTVFLINGLTKGDWVEALMFAIATAV GLTPEMLPMIVTTNLVKGSREMAKEGTIMKNVNAIQNFGGMDILCTDKTGTLTQDKVILE YHYNIGCQEDQKVLDLAFLNSYFQTGLRNLMDNAVIQAATQESDIQSDDFYKVDEIPFDF NRRRMSVIIKEFKTRETRLITKGAVEEMLLVCTQVLLDGEIVPLTETLRQKITKDVEALN RDGLRVLAIADKKVEAAEWEYTTKDESELILQGYLAFLDPPKETAAAAIQALHQHNVAVK VLTGDNQYVTHSVCKEVGLAGEKIITGNELQQLNQEELRKTVQAYNIFAKITPDQKVRIV NALTENGQTVGFLGDGINDAGAMRAADVGISVDTAVDVAKESADVILLRKDLMVLEKGIL SGRRVFTNTMKYVKLTASSNFGNVFSVIPASIFLPFLPIAPIQSLLLNLIYDTSCMSVPW DKVDEEYVEKPKKWEPKSIGNFMRWFGPTSSIFDIVTYLFMYFIVCPAILGGSFFELNGA DKLLFIGIFHAGWFIESLWSQMLVLHFLRTEKMPFLQSSASGIMTLVTTAGIALGTVLPF TAFGAELGFVGLSPSYFLYLIPTIVAYLALVAFIKVLYVKRYGQLL >gi|284795521|gb|ADDQ01000028.1| GENE 13 12818 - 12907 94 29 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEDEPIVNSSQQQINEVKENGKENASLGP >gi|284795521|gb|ADDQ01000028.1| GENE 14 13385 - 14260 797 291 aa, chain + ## HITS:1 COG:cynR KEGG:ns NR:ns ## COG: cynR COG0583 # Protein_GI_number: 16128323 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 247 1 247 299 94 29.0 2e-19 MKLQQLEYFMAVSKYASFTLASQKLHTSQPYLSTQLKELERELGASLILRDKKHCRLSPA GEVVAKRTEMIFALIKEAQEEINELVTQGSTTTIRIGTNLIDIDKAFGEVLLLFNQSYPY VSIDFKYYYDLETALETDLIDIGIGIFLDTSIPLEKELIYTESYLLCVNKNHPLAHADSV TIDEIRSLPFAAYSDQVYEKKVFKRWERKINWENRQIVIELPSLHLVLDMVQREKACSIL PYSLTDELNRRNLVGIPLEDSPERAIYLVQNNHHGHCEAHRYLFEQLRYLF >gi|284795521|gb|ADDQ01000028.1| GENE 15 14284 - 15171 699 295 aa, chain + ## HITS:1 COG:ECs0391 KEGG:ns NR:ns ## COG: ECs0391 COG0583 # Protein_GI_number: 15829645 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 6 244 6 241 299 84 27.0 3e-16 MELFRLHYFLELCKVKQFTKAAENLAISQAALSKQIKILEATLGAELFNRQGQTTTLTPA GLILEKYCWRITNELVSIEEELKEINHSSNHIYVATYLCDLEYKLNDLLMTTLTDRSSNL QVHTIITENILQSLETMDADFGISFADLPLPEHIGKIDLFTANYQFILRNDHPALAKATT EEILKELTMYPFVRLNTEFSEQNKLTNWLDTTFSNFSPEKVIQVDTLSLITHLVSHSDSF AIVPEYTNIQLLDNSIHTLTYQELPKRNMAVYYLKERYMSRQLQQLLAECQKQFQ >gi|284795521|gb|ADDQ01000028.1| GENE 16 15233 - 16381 984 382 aa, chain - ## HITS:1 COG:L115706 KEGG:ns NR:ns ## COG: L115706 COG0772 # Protein_GI_number: 15672878 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Lactococcus lactis # 3 375 7 381 414 247 39.0 3e-65 MVNTKKFNLHLNYDLLLPIFLLTLLSSGVQYWIAVNEGKDGTVPALKQLFFIFVGYAGMF LASRLSQKFIWKVAPFFYGFSLILMSALYFSYDKGMYLLTGTKRWLDLGFIKFQPSEIAK IAFILMLAKIIVQHEQQDWSDKWRSDKQLLKKIVAVSVPVFFLMAVQKDFGTSLVFVTII LSLLVISGIDRKILIIIFSALATLGVILILLVFTEWGHKVLFFLHFKQYQLDRILAWIHP YDYVDKISYQQVQGLLAIGSGGLFGKGVHGIEVYVPVRESDMVFTFIGEAWGFVGSATVV FLYFYLFYQVLVAGLRSNSRFCMYICVALIFSLVFQTVENIGAVIGLLPLKGIPLPFLSQ GGTSLVMAITSLGFVKGREAAT >gi|284795521|gb|ADDQ01000028.1| GENE 17 16347 - 17522 988 391 aa, chain - ## HITS:1 COG:SPy0609 KEGG:ns NR:ns ## COG: SPy0609 COG0772 # Protein_GI_number: 15674690 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Streptococcus pyogenes M1 GAS # 11 378 23 405 434 208 36.0 1e-53 MNLRTLGLTKILLTFIILSIIGALMIYSASSYDLLMQGVKPTAVFIKQGIIMCLSWVLMF VIYKVRLEVLFNKKIAIGLLLVSVLLLLMVRLPFFGVAANGAQRWISLFGIQFQPSELCN FAIIYYLSCYLGEKENGLTTKQLRKQWLFVLVVAFLVLIQPKVGGAILILVIGSVLIFSA SIHAKFSVIAAGIVVASAALLSKIIIFLGDHRYLPHFFAHVYDRLVVLKNPFLSFHDRGF QPSMAYLAMYNGGFWGTGLANGMVKKGGLPEGQTDFIFAVIVEELGLIGGLLLLFLLLFL AASILRSSCVIKNHCYGLFLLGVGTLILAQTAINIGGVLGLIPMTGIPLPFVSYGGTSYL IFSVALGIVIKIIANERRQLNGQYKKIQLTS >gi|284795521|gb|ADDQ01000028.1| GENE 18 17681 - 17941 297 86 aa, chain - ## HITS:1 COG:no KEGG:EF1299 NR:ns ## KEGG: EF1299 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 86 1 86 86 129 100.0 3e-29 MVENFFKEGKLLVIPKKNAKKVQVFQRVANQFEFGKEYTEKEVNQRLREIYEDYALLRRY LVDYQYLERDKFGKIYQKCEQHTKII >gi|284795521|gb|ADDQ01000028.1| GENE 19 17967 - 18308 471 113 aa, chain - ## HITS:1 COG:lin0728 KEGG:ns NR:ns ## COG: lin0728 COG4817 # Protein_GI_number: 16799803 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 14 108 11 104 107 68 38.0 2e-12 MSDFKALIKKVIGDKKEYKEYKRRIAALRAEYRQVFQEIEKYAWHFSDHSGANMFNALTD LLDLFEEGAANGTPIKNITGEKVGDFAETIVNEVAGKWTDKQKEKLNHQFSKQ >gi|284795521|gb|ADDQ01000028.1| GENE 20 18312 - 18635 340 107 aa, chain - ## HITS:1 COG:lin0727 KEGG:ns NR:ns ## COG: lin0727 COG1695 # Protein_GI_number: 16799802 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 4 103 5 104 110 114 63.0 5e-26 MKQTELLKGILEGLVLAIIQRKETYGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVI AEKKPSEKGPMRKFYRLTSSGEAELADFWQRWTLLSKQVNKMKKMEG >gi|284795521|gb|ADDQ01000028.1| GENE 21 18785 - 19381 676 198 aa, chain - ## HITS:1 COG:MA1701 KEGG:ns NR:ns ## COG: MA1701 COG3153 # Protein_GI_number: 20090553 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Methanosarcina acetivorans str.C2A # 1 198 17 207 217 119 34.0 4e-27 MKIRQEKPAEYQAVERLTYQAFKELNLTENWRPTEHFIVHLLRESADFIPELSLVSETDQ GKLTGHIMSSKAKLRLPDHTEKAVLTVGPLSVHPEAQNTGVGSALIKHSVQKAKELGVGG LIILGHPTYYTKFGFVPATTFQITLPEKETSEALLALELLPGYFGTSGGEWHFSTCFAYP ETHPAELEAFEAELGINE >gi|284795521|gb|ADDQ01000028.1| GENE 22 19381 - 20331 613 316 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 [Bacillus selenitireducens MLS10] # 1 310 1 312 317 240 41 1e-62 MQVIQLHHPYEPNQIPNEEVVMVLGFFDGVHKGHQKVIETGKKIAEEKGLKLAVMTFNQH PSIVFQKVLPENMKYLTSLEQKERLMANLGVDILYIVEFTSAFAQLKPQDFVDQYIVNLN SAVAVSGFDYTYGPKEIAGVKQLPTYAQGRFEVVTVPKEEMTGAKISSTRIREKMEAGEM EEVTELLGYIYETEGTVVHGDARGRLLGFPTANVKVKSTVRLPRIGVYAVQIEVGGKWYV GMGSIGHNDTFGEGRDLTVEVYILDFHQDIYGEQVVVRWNHYLRDQVKFNGAEALIDQLK QDERDTADYFQQSEDK >gi|284795521|gb|ADDQ01000028.1| GENE 23 20357 - 21277 914 306 aa, chain - ## HITS:1 COG:lin1365 KEGG:ns NR:ns ## COG: lin1365 COG0130 # Protein_GI_number: 16800433 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridine synthase # Organism: Listeria innocua # 1 303 1 299 304 310 53.0 2e-84 MDGILPLWKERGMTSHDCVFKLRKILHTKKIGHGGTLDPDVEGVLPICVGKGTKVIEYMV DSGKTYEGEITLGFATTTEDVSGEIVEKKPVTTPLSTEQIDQAMAEMTGEITQIPPMFSA VKVNGKRLYEYARNGEEVERPQRKAMIYSFERTSEPIFNESAQTQSWRFKVVCGKGTYVR TLSVDTGKKLGYPAHMSDLTRTASGGLQAAQCLTLEEVAKQMAAETIDQCLLPIETAVEQ FPRIDLSDELYQKVKNGMRLHKKELGIKAMPESLVALFYQNQVVSLYMPHPTHDKLLKPS KVLRNN >gi|284795521|gb|ADDQ01000028.1| GENE 24 21432 - 22529 1279 365 aa, chain - ## HITS:1 COG:SP1937 KEGG:ns NR:ns ## COG: SP1937 COG5263 # Protein_GI_number: 15901761 # Func_class: R General function prediction only # Function: FOG: Glucan-binding domain (YG repeat) # Organism: Streptococcus pneumoniae TIGR4 # 50 200 26 177 318 83 36.0 8e-16 MFKKLMIQLALVIGLSLTIPMTACAYTIEADPINFTYFPGSASNELIVLHESGNERNLGP HSLDNEVAYMKRNWSNAYVSYFVGSGGRVKQLAPAGQIQYGAGALANQKAYAQIELARTN NAATFKKDYAAYVNLARDLAQNIGADFSLDDGTGYGIVTHDWITKNWWGDHTDPYGYLAR WGISKAQLAQDLQTGVSETGETVIIQPGKPNAPKYQVGQAIRFTSIYSTPDALINEHLSA EALWTQVGTITAKLPDRQNLYRIENSGHLLGYVNDGDIAELWRPQKKKSFLIGVDEGIVL RAGQPSLSAPIYGIWPKNTRFYYDAFYIADGYVFIGGTDTTGARIYLPIGPNDGNAQNTW GSFTS >gi|284795521|gb|ADDQ01000028.1| GENE 25 22675 - 23070 476 131 aa, chain - ## HITS:1 COG:lin0175 KEGG:ns NR:ns ## COG: lin0175 COG4824 # Protein_GI_number: 16799252 # Func_class: R General function prediction only # Function: Phage-related holin (Lysis protein) # Organism: Listeria innocua # 15 124 12 122 140 66 36.0 9e-12 MERYLNTITMLLSIFGGIVVRLLGGLDQLLDVFLFLIIVDFITGWIKAIATKELSSRIGM LGIAKKVTMLFVVAVAVRVEKVVGNNLPIREMVLIFYIANEGLSFFENIATFIPMPKKLK ELFIQLKNKDD >gi|284795521|gb|ADDQ01000028.1| GENE 26 23094 - 24863 1865 589 aa, chain - ## HITS:1 COG:no KEGG:EF1291 NR:ns ## KEGG: EF1291 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 589 1 589 589 1054 98.0 0 MSVEHIEELDTLNQGRLKINAILDQSNASAEKVDAYQVQLTNGISEAKNIADEAGKEAVQ IATDAGNQANETANQAMNNAKTAITIAGNAVSTANNNKQEFDTLRNDFDQLVAEAGDSNP EIVQARTDTQGIKQATLANRLQIDLNDRMTKADGISLLAKPTTVKMKLDFNGKTAGNTAT NANSYSTDFTAKILKKPTDVWEEVSQADYNKMASRDDEGVKTGSTQSGVIPQQLAAFNLV EAAKKLIPQMFETFTTDEAVAFIRQNVQFFMINQRVKAVAPNNQTIKIATYLPTTDNWVT QIQESAKEFGDFSIQINDQNFITDEGFIYLMSYTDSSNGVTPASLEVDYVGLHIGLSVDA QAVLAKSGFVQAEQLNTHVENQDNPHQVTAEQVGLGNVENYGFASDSEAVAGTLVSKYMH PKNVAEAIKGQAVTQTGDQEIAGVKNFVTMPTVNGLPLESSRMAIYEASGVGEVEAKYQA AFNKDNMKFVLIRVGNRVDAFVRCNLSDPTKLNNNLVKVFTVPTGYTLSTKITKGIWNLA LTAMQYTFPQPNCAGLYEMGNQGILFGANRAGNIYLQGSWYTDDPFPTK >gi|284795521|gb|ADDQ01000028.1| GENE 27 24896 - 26353 1190 485 aa, chain - ## HITS:1 COG:no KEGG:EF1290 NR:ns ## KEGG: EF1290 # Name: not_defined # Def: structural protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 485 1 485 485 948 98.0 0 MLMALDLKRTYTAILDNAYQVSYEKIENKIGSLDFTMPLDDPKNEFIEEMQWVELTDNEN EYIGLYRVMPTTIKKDANNNQIHYSATEALCTLGNTVLFGCHEIKNKTTKEAIQFLLNKQ KTKHWVLKKCDFSRKLTYKWENENGLVEPLFNIPADFEEEYLWQWNTEVYPFELSLVKPP TEAVARIQEGYNMQGFEIERNPKMLINRIYPLGSGEGVNKVNIRSVNQGVPYLENKAAID RYGLLESIWVEQRFSDPKALKENALRMLEEWTKPQVSWVVTAADLIKLTDQPLAIDRLRL GTVIMINTNEFGSVNLRIKKESKKDVFGAPQDIQLELGNLQETIHSTMTAFSRKQEISET YAQGATTLLNRSIQGELSKTQPVELNLYFDEDILYVNTAELTFKATAKGSSHSVTNIDLV VDGKKLPQLSLQQQRLNILSYLRKTTDGKIERGNHTLQFFSHQPLWLDASVICRVYIQSQ LGGQF >gi|284795521|gb|ADDQ01000028.1| GENE 28 26366 - 27292 1158 308 aa, chain - ## HITS:1 COG:no KEGG:EF1289 NR:ns ## KEGG: EF1289 # Name: not_defined # Def: tail protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 308 1 308 308 620 99.0 1e-176 MYKFVDTNQATHSTPLPSEALNFNGQFLEKVIPGYQTLSVSGRELVPSEIESYQLGIRDG KRHVYARIPERELTVKYRLSAVNNEAFRDAFNHLNVALFTEKDVSIWFNDEPEMLWFGSK SSVSDVPEGVNQVTGTFTLLLSDPYKYTRSDATSVMWGSPTITFQANYLMGNTGSGAVDF PILIEGGAYWGSTMITFQNRAYTMGDLGKEVRPIEIYPTVEGLKVKPTIILTGTGRGVWI KTRNDTINLGDFDRSEIIIDTENFYLTKNGAPMIRPMNDFYLYPNEPLYIQAKDSDFRLT IRYPNRFV >gi|284795521|gb|ADDQ01000028.1| GENE 29 27294 - 30227 3244 977 aa, chain - ## HITS:1 COG:BH0012 KEGG:ns NR:ns ## COG: BH0012 COG5412 # Protein_GI_number: 15612575 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Bacillus halodurans # 610 976 137 509 509 125 28.0 5e-28 MENDKEKTPLSEAKKSLAGVQQALKSMSGEYALLSGYLGKISAGVNQSATVMNTFKTVMQ QSGETVKKTGDETAKAADQMNTALTDSAEQAGEAAKKAGKKTSDGFTNAQNNMLSFGTAM TSAVSLPMLNVLKTAMGVGAGVSGEFQGMQGLIMASAGGISDSLQGELQGALTQMNQSFE AAAQVIQSVMAPGMEILVQVVITVVKGITALVNLFIKLPKPVQVFIVAIMGILAAIGPML IMVTMAQQKFQQFSDGLVLVKGNIGKLGGGLSKLSASFSALSGGPLILIVAAVLAAVAAF VYFYKTNETFRNSINSLASAIQGAVSAAFGKLVGLLQQIQPAFQQVMAVFKQFFAVGLEK MATIFSTIGRVLTGVFASGLQLGSNLLGQFGGTFDKAGLAVGFLVKVLTKVALAALGISG PFGLIISLIVSFVTAWMKTGDLSAGGITQVFDNLGNTITSVTTMLAANLPKVIQLFTTVL TSILGKITEAIPSIVTALSSLITLIVGAIVANLPVLIEAATQIITTLIQGITTVLPMLIE VGLSLLMTLVNAIVTALPTITTAAINIITTLVTAFVTALPMLVTAGVSIITALVNAFVTM LPLILTAGLQILMALITGIMTILPQLIQSALTIILALVTALVGALPQIISAGVKLLMALI QGIISILPTLVAAAITLILTLVNALIGALPQIISAGVKLLMALIQGIISILPQLVTAAIT LITALMGALINALPQLLSAGIQLIQALINGVLSLLGALLSAAGTLISQMIMKIGSYFGQL LASGGQLVENIKNGVTNAADQVKNAIGSVIEGAWQAIQGWFSKFTDAGANIVGMIADGIT GAIGKAKEAIDGVVSKIRNFLPFSPAKEGPLSDLHKLNFGGTIATGIYAGETAVSRAMAS ILDLPLLNDFALDLAGRGNFTATIDHRLENDAYNRPLFVTVESTLDGKVVAATTAPYLAT ELQRQQVKQNNRLGRRG >gi|284795521|gb|ADDQ01000028.1| GENE 30 30217 - 30585 358 122 aa, chain - ## HITS:1 COG:no KEGG:EF1287 NR:ns ## KEGG: EF1287 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 122 1 122 122 185 99.0 4e-46 MYHDIALSAFRYLGCRSFEEVDRMTMSEFELRMIAFNLAEVDEERKRHELAYLNVKAQAT NKKGKPVFESFKSFYDYEKRVAEVLAANQPQRTKLNERKKTQLATVAERLRRYREGRRVD GE >gi|284795521|gb|ADDQ01000028.1| GENE 31 30603 - 30962 468 119 aa, chain - ## HITS:1 COG:no KEGG:EF1286 NR:ns ## KEGG: EF1286 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 119 1 119 119 207 100.0 7e-53 MNLEINGKTIEVKFTIGAIRELDKRYQIENGAAKFGMGISSAMIYLRQYNPVILVDIMEA LQSGQLKIGKSEIEAWLMTQDVKKLSDDLLKEMGKQPLTKPMIDQFSKEAKKAEAQATN >gi|284795521|gb|ADDQ01000028.1| GENE 32 30995 - 31507 896 170 aa, chain - ## HITS:1 COG:no KEGG:EF1285 NR:ns ## KEGG: EF1285 # Name: not_defined # Def: major tail protein # Organism: E.faecalis # Pathway: not_defined # 1 170 1 170 170 311 99.0 7e-84 MGEVMQGKDRILLVRRLDEAATKKAMKPLFQIEHEWEFSRESSGTQTKDGVANAVSGLEV TLSLSGLASRDDENLYMKDAVEDGILMEFWDVDLKGEKNAEGKYPAIYAQGYVNSWSLPA NVEELVEIETEASINGKPQDGFATVEADIIAEAQYAFQDTVPEKAPQPGE >gi|284795521|gb|ADDQ01000028.1| GENE 33 31520 - 31912 420 130 aa, chain - ## HITS:1 COG:no KEGG:EF1284 NR:ns ## KEGG: EF1284 # Name: not_defined # Def: structural protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 130 1 130 130 249 100.0 2e-65 MNEAEQELYEALVAICQTSGFLLLEELPTDLPDQPFVYLGDSKELPKPTKSAILGEIELI MHVYGALSERQQISTIKGTILRQATSNLKRTAHFNWGIKHQEVKAQMVKDTKQMKKTIWH AVLPLHMQFY >gi|284795521|gb|ADDQ01000028.1| GENE 34 32157 - 32564 555 135 aa, chain - ## HITS:1 COG:no KEGG:EF1283 NR:ns ## KEGG: EF1283 # Name: not_defined # Def: RinA family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 135 1 135 135 250 99.0 9e-66 MRTSTFNYIKDILADFYKTDEYIRQREEELRHPYQEADLNAGIRGQGLHSVVTERMAITI AMDRRLWNLERNRDIIKNCLAEADEQTRVIIEELYMKKRPSLTLIGLAQQLFISKSQAYK LRNHFFEAVADELGM >gi|284795521|gb|ADDQ01000028.1| GENE 35 32584 - 32955 296 123 aa, chain - ## HITS:1 COG:no KEGG:EF1282 NR:ns ## KEGG: EF1282 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 123 1 123 123 212 99.0 3e-54 MSNLTKCKKDLFEMKSVVFKDISKQQSEKAQKRKRLLQLMNQYPDWASQKNKLIMQEIQE LGQAIGNWSMDQSRPIQSIKAASFTKSEYLYLIWLGYSDEAIRHGLDMSKECYFIYRLTL LNE >gi|284795521|gb|ADDQ01000028.1| GENE 36 32948 - 33040 213 30 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLTIIIGFIFWTMTLMLGYLIGEREGRKHE >gi|284795521|gb|ADDQ01000028.1| GENE 37 33043 - 33885 966 280 aa, chain - ## HITS:1 COG:L0312 KEGG:ns NR:ns ## COG: L0312 COG1484 # Protein_GI_number: 15673401 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Lactococcus lactis # 48 275 62 291 294 99 29.0 9e-21 MHATDQTFQILLSQLLEKVEDRCPECGSEQYVWQQKNKDGTERCAPTCWSCGYKMLKKHE QEANQQRSQESFMARTQKFFHQGSLIADDALRQCRLTNYQTTELETRQAKERALAAVSAI VEEKPIHVIFSGKPGVGKSHLAISILVEVLERSAYQKYCLFVSYSELLEKLKMSMNESAK SQAKAQAYITRMKKADVLVLDDLGAELGIKNKVSTDFNNDILNRILEARQNKATIFTTNF SGKQLVEAYGTRIISRLMKHASGYVFQYKDTTDKRMRSVK >gi|284795521|gb|ADDQ01000028.1| GENE 38 33904 - 34674 705 256 aa, chain - ## HITS:1 COG:no KEGG:EF1279 NR:ns ## KEGG: EF1279 # Name: not_defined # Def: DNA replication protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 256 1 256 256 495 98.0 1e-139 MAERRMFAKTIIDSDAFLDMPLSSQALYFHLAMRADDDGFINNPKKLQRMVGCGEDDLKL LMVKKFILVFESGVIVIKHWKIHNYIRSDRYKPTLYQEEKNQIVEKNSKAYTFKAESSVS GQPADYQRLPQESIVQSKLGQSQGSSSENDCLKMIYHFYEENGFGTLASKTSQDFKYWLQ DFMQKGASQEEACQLILHALGIAIDRNKRNYGYVNAILKSWEQQNYLSVHEVLVNDKKQV LEHTPQITEEYQELGF >gi|284795521|gb|ADDQ01000028.1| GENE 39 34705 - 34839 181 44 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSRNYKKTLSDMLLLAIILLISSVSIKIGAIVIGMIGLMELLTE >gi|284795521|gb|ADDQ01000028.1| GENE 40 35056 - 35538 604 160 aa, chain + ## HITS:1 COG:FN2065 KEGG:ns NR:ns ## COG: FN2065 COG1396 # Protein_GI_number: 19705355 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Fusobacterium nucleatum # 4 78 7 79 155 59 46.0 2e-09 MNIFAIRLKEALTAKNIKPSELAKKTGIGKSSISDWLAGRYEAKQDKVYRIADALDINEA WLMGQEVPMEKNASTIDRIYKKLEPQRQAIVYQFAEQQLHEQQTQAEILSFPRRDEMTLA AHAGDPEKIFSKEEIEKIHDYLDEIDAKYQQSISSDKKED >gi|284795521|gb|ADDQ01000028.1| GENE 41 35585 - 36058 537 157 aa, chain + ## HITS:1 COG:no KEGG:EF1276 NR:ns ## KEGG: EF1276 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 157 1 157 157 283 100.0 2e-75 MNDYEKLVSSIQKDVTVLEIDLYNQTGCYGLYRNGKIYIEKTLSTRQKKNILAEEYGHYQ TSVGTILNQNCTENRKQELKARNVALEQLVTLDDLIRCSEAGLSNHYSCAEFLEIDVETL KNVITYYRQKYGATYLYKGRIFEFRDYSVMVLNTGLT >gi|284795521|gb|ADDQ01000028.1| GENE 42 36094 - 36201 74 35 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLKSILENSRAIFVPMVNMSDANHKIWDKYEDEYK >gi|284795521|gb|ADDQ01000028.1| GENE 43 36431 - 36781 633 116 aa, chain - ## HITS:1 COG:SPy1719 KEGG:ns NR:ns ## COG: SPy1719 COG0858 # Protein_GI_number: 15675570 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-binding factor A # Organism: Streptococcus pyogenes M1 GAS # 1 113 3 115 118 135 61.0 2e-32 MANYRDRRVGQEIMREVNDILNKRIRDPRVQGITITDVRVTGDLQQATIYYSLLSDLASE QQKAQQGLDKAKGLIRKELGQRLTLYKTPELIFERDESVQYGNHIDELIRKLNQGE >gi|284795521|gb|ADDQ01000028.1| GENE 44 36806 - 39202 2575 798 aa, chain - ## HITS:1 COG:lin1362 KEGG:ns NR:ns ## COG: lin1362 COG0532 # Protein_GI_number: 16800430 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 2 (IF-2; GTPase) # Organism: Listeria innocua # 1 798 1 781 782 844 60.0 0 MGKKRIYELAKEMNKASKDVVDKAHQLGMDVKNHMGAISSEQETKLRQAFGGGSTVNTQS KATNNQKQQTTQNKPANKKPMNNKPGEQRNNQNRPNNQSTNGQQRNNNNQNRHGQSNTQN RSNQTNTNNQNRNTQNNNGSTTNQNRTSQNNNGGNNQNRGGQNRNNNFGGGQNRNNRNNF NNQNRNRFNKKGKKGKHQQESAKPAVPARKFRELPDVLEYTEGMNVADIAKKIHREPAEI IKKLFMMGVMVNQNQALDKDTIELLAVDYGMEPQEKVQVDIADIDKFFEPEAVVEENLTT RPPVVTIMGHVDHGKTTLLDTLRHSRVTSGEAGGITQHIGAYQLDIDGKPITFLDTPGHA AFTSMRARGASITDITILVVAADDGVMPQTIEAINHAKAAKVPIIVAVNKIDKPGANPDH VKQELSEHELIPEEWGGDTIFVNISAKFNQNIDELLENILLIAEVEDLKADPTQKAIGTV IEARLDKGKGPVATLLVQQGTLHVGDPIVVGNTYGRVRVMTNDMGRRDKEAGPATPVEIT GLNDVPQAGDRFVVFEDEKTARQAGEERAKRALLEQRSASSRVTLDNLFESLKEGELKEV NIIVKADVQGSAEAVSASLQKIDVEGVRVKIVHAAVGAINESDVTLAAASNAIIIGFNVR PTPQAKQQAEQEEVDIRLHRIIYKALEEIETAMKGLLDPEFEEKITGQMTVRELYKVSKV GTIAGCYVTEGFIRRDSGVRVIRDGIVIYEGKLASLKRFKDDVKEVKLGFECGAMIENFN DLRVDDAIEGFIMEEIKQ >gi|284795521|gb|ADDQ01000028.1| GENE 45 39215 - 39520 495 101 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29375842|ref|NP_814996.1| ribosomal protein L7A family protein [Enterococcus faecalis V583] # 1 101 1 101 101 195 100 6e-49 MENKTKILNLLGLAMRAGKLVTGEELTLKDIRANKAKFVFVAQDASENTRKKIKDKSSYY NVPVSELFSQFELSQAIGRPRMVIGVTDAGFATKIKELLKG >gi|284795521|gb|ADDQ01000028.1| GENE 46 39510 - 39809 492 99 aa, chain - ## HITS:1 COG:L175136 KEGG:ns NR:ns ## COG: L175136 COG2740 # Protein_GI_number: 15672747 # Func_class: K Transcription # Function: Predicted nucleic-acid-binding protein implicated in transcription termination # Organism: Lactococcus lactis # 1 94 1 94 108 96 53.0 1e-20 MKKRKIPMRKSVVSGEMKPKKELVRITRSKEGEVALDPTGKLPGRGAYVDLDPAEVQKAW DKKILDRVLETKLSDEFYQELLDYVTHQKARKELFGDGK >gi|284795521|gb|ADDQ01000028.1| GENE 47 39830 - 41029 787 399 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis 16M] # 4 372 9 372 537 307 44 8e-83 MSKEMLNALDVLEAEKGIPKDTVIEALQAALVSAYKRHYGQASNVEVEFEPKKGNIHVYA VKEVTEEVFDSQLEVSLKDAVALNGAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVRE AERTIIYNEFSEYENDIMQGIVERQDRRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKV YVSRVENTSKGPQVFVSRSHPDLLKRLFEQEIPEVYDGIVEIVSVAREAGDRSKVAVRST DPNIDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIYISNALNPAQVLDVIFDPE NSKACTVVVPDYQLSLAIGKRGQNARLAAKLTGHKIDIKSESDMAEFYEQQANQEVAEVA EEMDEAIIHSDMTADDYENLAAEEAVVEAEITEELPEQE >gi|284795521|gb|ADDQ01000028.1| GENE 48 41172 - 41645 607 157 aa, chain - ## HITS:1 COG:lin1358 KEGG:ns NR:ns ## COG: lin1358 COG0779 # Protein_GI_number: 16800426 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 157 1 155 155 172 57.0 2e-43 MSSAVETVTKLVTPILEEQNFELVEVEFVKEGKNWFLRVFIDKEGGIDIEECAFVSEKLS EKLDAMDPDPIPQAYFLEVSSPGAERPLKKESDYEQAVGKYIHISLYQAVDGEKQIEGTL VHLDSEQLTLSVKIKTRVKEMTFERKNIAKARLAIQF >gi|284795521|gb|ADDQ01000028.1| GENE 49 41851 - 42591 625 246 aa, chain - ## HITS:1 COG:no KEGG:EF1269 NR:ns ## KEGG: EF1269 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 246 383 628 628 380 96.0 1e-104 MAKITTDQNGTAIVKGLLKDNYTLEETKAPTGYQLSQNKISITPEDFGKNLVALKTVVNH EISYQPVAASFLAGKVLLGKPLKDAEFQFELLDENGTVLETVSNDTLGKIQFSPLTFETP GNYQYTIREVNTQQAGVSYDTHNLQVQVTVEALLGNLVATTQYDGGQVFTNHYTPEEPIE STTPPTSGTTDTTTNSTTETTSITIEKQAIRNKELPKTGETKENAFLFLGSLLLIQGVFI YFKTKK >gi|284795521|gb|ADDQ01000028.1| GENE 50 42697 - 43737 987 346 aa, chain - ## HITS:1 COG:lin0203 KEGG:ns NR:ns ## COG: lin0203 COG4932 # Protein_GI_number: 16799280 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Listeria innocua # 58 338 43 314 586 87 27.0 3e-17 MKKRSFVYWGMFFILLSTLITPFLKLETGYAQTEPTSTSETNQISATPNVVPRKQVGNIV SAIQLTDKEGNPLGTINQYTDIYLRIEFNLPDNTVNSGDTSVIILPEELRLEKNMTFNVV DDTGAVVAIAQTDVANKTVTLTYTDYVENHANISGSLYFTSLIDFENVENESKIPIYVTV EGEKIFAGDLDYQGEGDDVNEKFSKYSWFIEDDPTEIYNVLRINPTGQTYTDLEVEDVLK TESLSYMKDTMKIERGQWTLDGNAIWQFTPEEDITDQLAVQYGPGDRNFSVHFGNIGTNE YRITYKTKIDHLPEKGETFTNYAKLTENQTVVEEVEVSRVSQTGGG >gi|284795521|gb|ADDQ01000028.1| GENE 51 43879 - 46275 2062 798 aa, chain - ## HITS:1 COG:L168650 KEGG:ns NR:ns ## COG: L168650 COG0474 # Protein_GI_number: 15672557 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 22 788 4 772 775 717 50.0 0 MQENEPIAVTANAERYYPEDKQGLTAAQVEERQRKGLVNAAVDTEFITTKQIVINNVFTY FNLIFVVLGVLLMLVQSYKNMTFLPVVIINTVIGIYQEIKSKKVLDSLNILNATKVTVVR DGQEQEISPDELVLDDVVLFKSGEQISGDAIVLSGEVRVNESLLTGESDEITKVADSQLL SGSFIVSGSCYARIDKIGAEAYVHQLTLEAKSIKKGEQSEMVGSINRLVKWVGIIIIPIG CVLFFQSYFINHQGLHDSIVSMEAALIGMIPEGLYLLTTVALAASTMRLAKRGVLLHNMK SIESLARVDVLCVDKTGTITENTMEVQELVPVVSIENDGTDLTNVEKLIGDFCRTMSADN DTMKAMKEFFVTNNQREAVSYTSFSSVEKFSSVTFPEATYILGAPEMILRDNYEMYQSEV EHYTSQGYRLLVFGKYLGEFQETLAAEVQPLGYILLWNPIRKEAKATFEYFAEQNVAIKV ISGDNPLTVSNVAQAAGIIGAENYVDARTLTTMEAQTEALEKYTVFGRVTPEQKKQFVLL LKKLDHTVAMTGDGVNDILAMKEADCSIAMASGNQATAQASQVVLLDSDFSTMPEVVFEG RQVVNNIERSSSLFLVKNIFSLLMSVFAMIFAVTYPLQPTQVTLISLFTIGIPSTFLALE PNHRRIEGKFLFNVLSKAIPGGLTDMLVVGALLICGDILALQKTDISTTATLLLVSVGFM VLYKISSPMNRYRKRVMIGCLIGMVITSISMKNLFSLTSVSPTALLLLAILFFAADSTFQ HLSTISEKVQLWFYKKRH >gi|284795521|gb|ADDQ01000028.1| GENE 52 46518 - 47435 842 305 aa, chain + ## HITS:1 COG:lin1191 KEGG:ns NR:ns ## COG: lin1191 COG1039 # Protein_GI_number: 16800260 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HIII # Organism: Listeria innocua # 4 304 3 305 308 255 47.0 7e-68 MAQNHVIKVSKKTLAEMTTVYQPNRLNKTVPYTVFVAKVGTTTITAYQSGKVMFQGPQAE KEAARWEGTSTTPQKKVSPQTTTLPADFGNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMI SKLKALGVRDSKELTDPQIIQLSHVIKELIPYKLLIVEPKKYNEIQPNYNAVHMKVALHN QAIYLLLQELAPTKPEGILIDQFTPENNYRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAA SIISRAAFLEELDKESAELGFSVPSGAGSKSDQVAARILKKGGLDLLANYAKLHFANTQK AQKLL >gi|284795521|gb|ADDQ01000028.1| GENE 53 47502 - 48674 326 390 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|223476703|ref|YP_002580685.1| ribosomal protein L11 methyltransferase, putative [Thermococcus barophilus MP] # 2 389 3 393 396 130 25 2e-29 MKLQVTKKAEHKFKKGYPLIQKEDLQQVPAPLPTDWLTLIDSKGQRLAEGYLGEQNKGIG WLLSWHGPINQSFFQQLFEISREKRTSFEKDSLTTAYRLFNGEGDGIGGLIIDRYADYAV FSWYNETLYQKKAELLTAFRTVYPDIIGAYEKIRFSTKDLPESQFLYGEQAPEPLLVTEN GVQFATYLNEGLMTGIFLDQKEVRGRLVDGFAVGKTVLNMFSYTGAFSVAAAMGGAVATT SVDLAKRSLPKTTEQFEVNHLNLAPQKIIVMDVFDYFKYASRKGLSYDMIILDPPSFARN KKKVFSVAKNYGELVKDSIDILTDKGTLIASTNAANLSLAKYKKMVITALQEKNVRYKIT DTYQLPADFQVNPNFPEGNYLKVLFIEIEK >gi|284795521|gb|ADDQ01000028.1| GENE 54 48932 - 51040 2004 702 aa, chain + ## HITS:1 COG:SPy0807 KEGG:ns NR:ns ## COG: SPy0807 COG1368 # Protein_GI_number: 15674849 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Streptococcus pyogenes M1 GAS # 3 694 18 712 736 735 55.0 0 MKKLFKTNILNTRLGLFSLIAILLWLKNLFAYAVDFHLRLENINEYFILLINPIATTVFL LAIALYVRRKKASYITMMIIYFLMSLLLFSNVVYYREFTDFITVNTMLGAGKVASGLGES ALRLFRPYDVIYFLDFIIIGVLLLTKKIKTDARPVRARVAVSVTLLSVVFFLFNLFMAET ERPQLLGRQFSRDYIVKFLGLNAFTVYDGITTYQTNQVRAEASANDMKQVEDYVKQQYAA PDDSKFGIAKGKNVIYIHLESFQQFLVNYKLKDENGVEHEVTPFINSLYNSKSTFSFDNF FHQVGQGKTSDAETLLENSLFGLDQGSLFTQVGGKNTFEAAPDILKQTQGYTSAAFHGNA GNFWNRNETYKRLGYDYFFDASYYDVNSDNSFQYGLHDKPFFNQSVQYLEHLQQPFYSKF IAVSNHYPYSQFTNDEAGFPIAKTSDETINGYFATANYLDKAVEEFFNYLKSSGLYENSV IVLYGDHYGVSNSRNQNLAELVGKTKADWNDFDNANMQRVPYMIHVPGQENGGVNHTYGG QVDALPTLLHLLGVDTKNYIQLGQDLFSKQHNQIVAFRNGNVVTPKYTILGSSIYDTKTG TLITEPTEEVKKEVADLKAKATKQLETSDQITNGDLLRFYTNSGLKPVNPEDYDYKNQLQ QLEAIEKEKGEKSTSVYSKNNNKSTVDEYHTDSYQGYQKTGK >gi|284795521|gb|ADDQ01000028.1| GENE 55 51146 - 51847 512 233 aa, chain + ## HITS:1 COG:no KEGG:EF1263 NR:ns ## KEGG: EF1263 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 233 1 233 233 361 98.0 9e-99 MRSVRYATASSFYHKKITLITALFFFLFSFLLTGLFNLIDFEKEFLRTMPDFVDIEKQTS YHYQLIQYYWHLYLGSVIFFGVTFLLLMYVTLRIKKEEIHTWYHMHFSNMYVTKQLLLEL CLPALLGIFSFLLFTLMFQETYNTVLWAARDAILQWSHLEPPAFLAKSTDQDVTITNIQH LGIQTIQAFSFDFKSMQSLYTIRNCFVNCLILLGIPLVCGTPFTLLYLRTHQK >gi|284795521|gb|ADDQ01000028.1| GENE 56 51862 - 52413 515 183 aa, chain + ## HITS:1 COG:no KEGG:EF1262 NR:ns ## KEGG: EF1262 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 183 1 183 183 308 99.0 6e-83 MNVTPSFKKTTEKKSSFDALALREVYGIIYSAPEQELALADFFQTNQLTITRLSSSETFL PYLPLEENLFIASTIKERDRKVVLAEAFQVFQLEPALLGRSFTSFTTFEKIKMRIIQLLL SKTSTLVIDDIFSSLTIGQRQEILPQLKIAVQKRNKRLLFLTKDPQIIDSPYVHPLSLHA LLN >gi|284795521|gb|ADDQ01000028.1| GENE 57 52451 - 53920 1562 489 aa, chain - ## HITS:1 COG:BS_yclK KEGG:ns NR:ns ## COG: BS_yclK COG0642 # Protein_GI_number: 16077444 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 1 482 4 467 473 326 40.0 8e-89 MKYLYQQLLAFIGVIALIILIVGTSFTQLTKRTMQENNYEQLYGYAESALETRDFFINVA GVSDRDVLSYSFQLTERVLQKQDVQFVFINKDREVQYPPVDSTKKLDFSLIDKNWDQIMK GNRVYATENIDIYGARNTSSYVMLPVYASNQSSDKKVIIGSLVITQPAKNVDRSVQSVTQ NLIKGFIFSGVIALLLSYLFATFQVKRINRMRKATKEITSGNFDIQLPVHDKDEFDDLAE DFNKMAASLKESQEEINRQEERRRQFMADASHEMRTPLTTINGLLEGLQYNAIPENQKEN AIKLMQNETARLIRLVNENLDYEKIRTNQIQIVVKKFNGTEALENIVTQLTAKAEAAGNQ LYLDTTEPIDVYADYDRFVQVVVNIVQNAIQFTENGEIHIALEKGYLETIVRISDTGIGM TEEQILNIWDRYYKVDPSRKNTKYGESGLGLPIVQQLVRLHKGKINVESELGKGTTFIIS FPDVEITEN >gi|284795521|gb|ADDQ01000028.1| GENE 58 53920 - 54639 883 239 aa, chain - ## HITS:1 COG:BS_yclJ KEGG:ns NR:ns ## COG: BS_yclJ COG0745 # Protein_GI_number: 16077443 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus subtilis # 1 235 1 226 227 267 60.0 1e-71 MNILMIEDNESVSEMMQMFFLNEGWEATFKDDGKEGLATFLASPEKWDMITLDLNLPSMD GMAVCREIRKVSANVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALHRR AEVAEAAHDTSENTDETFDVITDHFKMNTKTRETYLDNQLIEGLTPKEFDLLYTLAKKPR QVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEKVGPQVIQTVWGVGYKFDDSGVA >gi|284795521|gb|ADDQ01000028.1| GENE 59 54854 - 55633 909 259 aa, chain + ## HITS:1 COG:lin2311 KEGG:ns NR:ns ## COG: lin2311 COG0561 # Protein_GI_number: 16801375 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 3 259 2 256 256 239 46.0 5e-63 MDKMKAITFFDLDGTLLDGTSQITPEITAAVAALKDNQILPLIATGRTLCEIQPIMKASG IDSAIVMNGQFIHYEGKTIYSDEFTTEECVSLHEHVKHRGHELAFYNERRIFCTGHTGTV KQAYDYIHSAVPEIDPTGYENDAVNMMLVLSQHGDDDEYYYERFPELTFYRNGPFSIDIV RKGVSKGSGVKNLFNTLGLNGIPTYAFGDGINDLALFEACDYGIAMGNAREELKEKATFI STKNTENGIVNGLKKFDLL >gi|284795521|gb|ADDQ01000028.1| GENE 60 55651 - 55857 215 68 aa, chain - ## HITS:1 COG:no KEGG:EF1258 NR:ns ## KEGG: EF1258 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 68 1 68 68 111 100.0 7e-24 MDNQWLLYGISSVVLIILIRRTILSGNIVLSCLLGAILLIQVVGVALCAQQKKKNEHTKE LPSSKVHQ >gi|284795521|gb|ADDQ01000028.1| GENE 61 56089 - 56865 762 258 aa, chain + ## HITS:1 COG:lin0587 KEGG:ns NR:ns ## COG: lin0587 COG2966 # Protein_GI_number: 16799662 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 10 258 2 250 250 233 47.0 3e-61 MKGAIPLVNSEKRKQLIIDTCILAGKIMLESGSEVYRTEDTITRIAANAGEPESVCYTTA TGIFVGFRSSNYTQLENIPQRSINLEKVSLVNQLSREFAQKEITLPELYQRLTLLETDTP TFSISLRLLAAGIVSCTLMYIFGGTWQDFIATFFVGVIGYTSYLFTQKLFQVPYLDSFAA AFVIGLLAYLAVHFHLAVNIDNIIIGAVMPLVPGVAITNSFRDILAGHLISGTARGTEAI FIAGSVGLGIALIFKLFM >gi|284795521|gb|ADDQ01000028.1| GENE 62 56877 - 57338 460 153 aa, chain + ## HITS:1 COG:lin0586 KEGG:ns NR:ns ## COG: lin0586 COG3610 # Protein_GI_number: 16799661 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 3 142 7 145 152 121 45.0 4e-28 MELIFHLLFSFLATVTFGIITNIPRKALVACGITGMTGWMIYYVLTQTFDASQTFANFLG TVGLGIASIFFSRYKKMPMIIFYIPSLVPLVPGGPAYQAVRSILLGNIDDGLQLILKVVF TAAAIAAGFMVTSLLERIVKRFFPKRLFRLVKK >gi|284795521|gb|ADDQ01000028.1| GENE 63 57371 - 58138 209 255 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 25 238 38 248 329 85 29 8e-16 MKPVVELKNATKIIDNGMNEKKVILDHVNLAIYPGDFITVLGGNGAGKSTLFNSLAGTLT LTEGQFLIEGVNRTNLSEVKRAKSLARVFQDPKMGTAPRMTVAENLLLAMKRGQKRPLTL RKINEQRALFTKICQEVGNGLENHLDTPTGNLSGGQRQALSLLMATITKPELLLLDEHTA ALDPKTSKQLMHLTEQRIEEGNLTCLMITHRMEDALRYGNRLIVLQKGKIVQDLNAAEKA QLTLQDLLLFFEEVE >gi|284795521|gb|ADDQ01000028.1| GENE 64 58135 - 58890 876 251 aa, chain - ## HITS:1 COG:SP1070 KEGG:ns NR:ns ## COG: SP1070 COG4120 # Protein_GI_number: 15900939 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 239 45 280 288 228 57.0 7e-60 VPAITTGVSPFVATLLGVGAGMLAGLVTGLLFTKGKIPIILAGILVMSGLNSVILFVMKS PNKSLLNQPKIQDVFQKMALPDYYDTIFLGISVLAVVMILLLFFFNTSLGQAYIATGDNE EMARSIGIQTDRMKILGLVLSNGLIGLSGALIAQNDGYADVSKGTGVIVIGLASLIIGEV LFGELTFGERLMAIVVGSIIYQLLILLVIKLGFDTTYLKIFSAVILAICLMIPQLKKALR LHGFSDKGETK Prediction of potential genes in microbial genomes Time: Sun May 15 12:37:19 2011 Seq name: gi|284795520|gb|ADDQ01000029.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont67.3, whole genome shotgun sequence Length of sequence - 100434 bp Number of predicted genes - 103, with homology - 97 Number of transcription units - 47, operones - 28 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 9/0.000 - CDS 1 - 127 200 ## COG4120 ABC-type uncharacterized transport system, permease component 2 1 Op 2 . - CDS 152 - 1141 1095 ## COG2984 ABC-type uncharacterized transport system, periplasmic component + Prom 1043 - 1102 7.0 3 2 Tu 1 . + CDS 1143 - 1607 -159 ## gi|256958742|ref|ZP_05562913.1| predicted protein + Term 1660 - 1696 -0.9 - Term 1803 - 1840 3.1 4 3 Op 1 . - CDS 1869 - 1976 176 ## 5 3 Op 2 . - CDS 2040 - 2699 667 ## EF1250 hypothetical protein - Prom 2739 - 2798 5.3 + Prom 2831 - 2890 8.0 6 4 Tu 1 . + CDS 2919 - 4631 1790 ## COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP + Term 4650 - 4690 1.1 + Prom 4678 - 4737 3.0 7 5 Op 1 . + CDS 4787 - 5050 418 ## EF1248 hypothetical protein + Term 5061 - 5104 1.4 8 5 Op 2 . + CDS 5124 - 5465 430 ## EF1247 hypothetical protein + Term 5470 - 5512 9.2 - Term 5458 - 5499 8.2 9 6 Tu 1 . - CDS 5504 - 5962 576 ## COG2707 Predicted membrane protein - Prom 6146 - 6205 7.0 - Term 6358 - 6417 18.0 10 7 Op 1 1/0.286 - CDS 6436 - 7485 1369 ## COG0673 Predicted dehydrogenases and related proteins 11 7 Op 2 . - CDS 7510 - 8943 1783 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase - Prom 9034 - 9093 7.4 + Prom 9101 - 9160 9.6 12 8 Tu 1 . + CDS 9186 - 9899 810 ## COG2188 Transcriptional regulators + Term 9968 - 10017 1.4 + Prom 10016 - 10075 7.4 13 9 Tu 1 . + CDS 10170 - 10700 593 ## EF1241 hypothetical protein + Term 10922 - 10956 -0.8 - Term 10675 - 10722 8.4 14 10 Op 1 2/0.143 - CDS 10733 - 11698 953 ## COG1609 Transcriptional regulators 15 10 Op 2 1/0.286 - CDS 11714 - 14989 2981 ## COG3459 Cellobiose phosphorylase 16 10 Op 3 . - CDS 15007 - 17157 2486 ## COG1472 Beta-glucosidase-related glycosidases 17 10 Op 4 . - CDS 17162 - 17926 652 ## COG3568 Metal-dependent hydrolase 18 10 Op 5 . - CDS 17907 - 18824 767 ## COG3458 Acetyl esterase (deacetylase) 19 10 Op 6 . - CDS 18817 - 19410 496 ## EF1235 hypothetical protein 20 10 Op 7 14/0.000 - CDS 19467 - 21065 2235 ## COG1653 ABC-type sugar transport system, periplasmic component 21 10 Op 8 7/0.000 - CDS 21083 - 21964 694 ## COG0395 ABC-type sugar transport system, permease component 22 10 Op 9 . - CDS 21979 - 22890 970 ## COG4209 ABC-type polysaccharide transport system, permease component - Prom 22927 - 22986 10.9 - Term 23146 - 23178 3.2 23 11 Tu 1 . - CDS 23182 - 24006 887 ## COG1408 Predicted phosphohydrolases - Prom 24144 - 24203 6.4 - Term 24151 - 24198 11.4 24 12 Op 1 . - CDS 24214 - 24309 191 ## 25 12 Op 2 . - CDS 24330 - 25013 400 ## EF1229 hypothetical protein 26 12 Op 3 . - CDS 24955 - 26445 1034 ## EF1228 hypothetical protein - Prom 26571 - 26630 7.0 - Term 26582 - 26617 5.2 27 13 Op 1 1/0.286 - CDS 26857 - 28113 1403 ## COG0431 Predicted flavoprotein 28 13 Op 2 2/0.143 - CDS 28132 - 28740 705 ## COG0431 Predicted flavoprotein 29 13 Op 3 . - CDS 28767 - 29702 950 ## COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis - Prom 29753 - 29812 10.6 - Term 29805 - 29845 5.1 30 14 Tu 1 . - CDS 29922 - 30791 834 ## EF1224 Cro/CI family transcriptional regulator - Prom 30841 - 30900 9.2 - Term 30874 - 30925 -0.4 31 15 Op 1 . - CDS 30997 - 32325 1283 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 32 15 Op 2 . - CDS 32309 - 34048 1627 ## COG1001 Adenine deaminase 33 15 Op 3 13/0.000 - CDS 34069 - 35133 1274 ## COG0687 Spermidine/putrescine-binding periplasmic protein 34 15 Op 4 8/0.000 - CDS 35160 - 36200 1185 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components 35 15 Op 5 36/0.000 - CDS 36239 - 37018 933 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 36 15 Op 6 . - CDS 37011 - 37847 932 ## COG1176 ABC-type spermidine/putrescine transport system, permease component I - Prom 37994 - 38053 6.2 + Prom 37665 - 37724 4.6 37 16 Tu 1 . + CDS 37762 - 37977 76 ## - Term 37983 - 38038 11.1 38 17 Tu 1 . - CDS 38055 - 38459 485 ## EF1217 putative lipoprotein - Prom 38506 - 38565 4.9 + Prom 38624 - 38683 13.1 39 18 Tu 1 . + CDS 38708 - 39427 777 ## EF1216 hypothetical protein + Term 39439 - 39488 2.3 40 19 Op 1 . - CDS 39462 - 39524 84 ## 41 19 Op 2 . - CDS 39542 - 40624 990 ## EF1215 hypothetical protein - Prom 40648 - 40707 11.9 - Term 40705 - 40755 16.3 42 20 Op 1 3/0.000 - CDS 40782 - 41486 921 ## COG3527 Alpha-acetolactate decarboxylase 43 20 Op 2 . - CDS 41498 - 43150 1995 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] - Prom 43185 - 43244 7.7 + Prom 43301 - 43360 6.4 44 21 Tu 1 . + CDS 43428 - 44336 1118 ## COG1316 Transcriptional regulator + Term 44338 - 44397 11.6 - Term 44325 - 44383 16.8 45 22 Op 1 . - CDS 44409 - 45110 577 ## gi|256962193|ref|ZP_05566364.1| predicted protein 46 22 Op 2 . - CDS 45114 - 45947 1029 ## COG1131 ABC-type multidrug transport system, ATPase component 47 22 Op 3 . - CDS 45960 - 46055 126 ## - Prom 46110 - 46169 10.5 - Term 46140 - 46189 6.1 48 23 Tu 1 . - CDS 46299 - 47762 1200 ## PEPE_0981 hypothetical protein - Prom 47800 - 47859 6.7 - Term 47850 - 47891 10.1 49 24 Op 1 . - CDS 47950 - 50061 1865 ## PEPE_0977 hypothetical protein 50 24 Op 2 . - CDS 50054 - 50398 289 ## gi|227518468|ref|ZP_03948517.1| hypothetical protein HMPREF0348_1451 51 24 Op 3 . - CDS 50415 - 51443 902 ## PEPE_0979 cell surface protein 52 24 Op 4 . - CDS 51430 - 52095 979 ## PEPE_0980 cell surface protein - Prom 52192 - 52251 8.9 - Term 52221 - 52275 7.0 53 25 Tu 1 . - CDS 52281 - 53624 1932 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases - Prom 53749 - 53808 8.3 - Term 53690 - 53749 8.4 54 26 Op 1 9/0.000 - CDS 53810 - 54502 474 ## PROTEIN SUPPORTED gi|149011191|ref|ZP_01832496.1| 30S ribosomal protein S9 55 26 Op 2 . - CDS 54483 - 56033 1557 ## COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism - Prom 56054 - 56113 8.8 + Prom 56096 - 56155 6.7 56 27 Op 1 3/0.000 + CDS 56181 - 57506 1464 ## COG3493 Na+/citrate symporter 57 27 Op 2 . + CDS 57538 - 58707 1470 ## COG0281 Malic enzyme + Term 58720 - 58766 12.1 - Term 58708 - 58754 8.3 58 28 Tu 1 . - CDS 58781 - 59629 1054 ## EF1599 transcriptional regulator Cro/CI family protein - Prom 59860 - 59919 10.6 + Prom 59646 - 59705 9.1 59 29 Tu 1 . + CDS 59729 - 59791 230 ## + Term 59821 - 59860 7.5 - Term 60071 - 60116 8.0 60 30 Op 1 7/0.000 - CDS 60130 - 60435 524 ## COG3906 Uncharacterized protein conserved in bacteria 61 30 Op 2 6/0.000 - CDS 60473 - 60895 504 ## COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) 62 30 Op 3 . - CDS 60892 - 61161 440 ## COG4472 Uncharacterized protein conserved in bacteria - Prom 61305 - 61364 11.1 63 31 Op 1 12/0.000 + CDS 61597 - 62349 789 ## COG2966 Uncharacterized conserved protein 64 31 Op 2 . + CDS 62364 - 62855 407 ## COG3610 Uncharacterized conserved protein + Term 62867 - 62913 11.1 - Term 62855 - 62901 11.1 65 32 Op 1 7/0.000 - CDS 62907 - 63773 923 ## COG3689 Predicted membrane protein 66 32 Op 2 . - CDS 63792 - 64706 909 ## COG0701 Predicted permeases - Prom 64731 - 64790 6.6 - Term 64838 - 64893 12.2 67 33 Op 1 . - CDS 64917 - 65723 999 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I 68 33 Op 2 . - CDS 65780 - 66634 726 ## EF1196 hypothetical protein 69 33 Op 3 4/0.000 - CDS 66634 - 67941 1065 ## COG4863 Uncharacterized protein conserved in bacteria 70 33 Op 4 8/0.000 - CDS 67941 - 69770 2048 ## COG5002 Signal transduction histidine kinase 71 33 Op 5 . - CDS 69777 - 70481 1005 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 70581 - 70640 7.2 - Term 70583 - 70649 16.8 72 34 Tu 1 . - CDS 70655 - 71320 930 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) - Prom 71412 - 71471 6.0 - Term 71411 - 71473 19.0 73 35 Op 1 . - CDS 71474 - 72334 1149 ## COG1307 Uncharacterized protein conserved in bacteria 74 35 Op 2 . - CDS 72327 - 72896 689 ## EF1190 hypothetical protein - Prom 72937 - 72996 6.3 - Term 72968 - 73021 9.6 75 36 Op 1 3/0.000 - CDS 73023 - 73661 454 ## COG4478 Predicted membrane protein 76 36 Op 2 1/0.286 - CDS 73664 - 74434 1046 ## COG0647 Predicted sugar phosphatases of the HAD superfamily 77 36 Op 3 2/0.143 - CDS 74440 - 75075 819 ## COG4470 Uncharacterized protein conserved in bacteria 78 36 Op 4 . - CDS 75110 - 76492 1476 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases - Prom 76519 - 76578 5.3 - Term 76551 - 76601 13.0 79 37 Op 1 9/0.000 - CDS 76617 - 78305 1905 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 80 37 Op 2 3/0.000 - CDS 78336 - 79208 822 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase 81 37 Op 3 1/0.286 - CDS 79242 - 79613 333 ## COG0136 Aspartate-semialdehyde dehydrogenase 82 37 Op 4 . - CDS 79595 - 80308 825 ## COG0136 Aspartate-semialdehyde dehydrogenase - Prom 80489 - 80548 8.3 + Prom 80370 - 80429 10.6 83 38 Op 1 . + CDS 80515 - 80973 711 ## COG1854 LuxS protein involved in autoinducer AI2 synthesis + Term 80993 - 81035 5.4 84 38 Op 2 . + CDS 81057 - 81791 838 ## COG0778 Nitroreductase + Term 81793 - 81853 24.5 - Term 81786 - 81836 19.2 85 39 Op 1 . - CDS 81849 - 82097 509 ## EF1180 hypothetical protein - Prom 82124 - 82183 4.6 86 39 Op 2 . - CDS 82188 - 83066 1210 ## COG1940 Transcriptional regulator/sugar kinase - Prom 83136 - 83195 6.4 - Term 83239 - 83284 7.6 87 40 Op 1 . - CDS 83293 - 83505 243 ## EF1177 hypothetical protein 88 40 Op 2 . - CDS 83498 - 84562 861 ## EF1176 hypothetical protein - Prom 84595 - 84654 3.9 - Term 84727 - 84766 8.4 89 41 Op 1 9/0.000 - CDS 84799 - 85068 480 ## PROTEIN SUPPORTED gi|29375747|ref|NP_814901.1| ribosomal protein L31 90 41 Op 2 1/0.286 - CDS 85169 - 86443 1220 ## COG1158 Transcription termination factor 91 41 Op 3 1/0.286 - CDS 86458 - 87750 1829 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase - Prom 87839 - 87898 11.2 - Term 87871 - 87905 5.2 92 42 Tu 1 . - CDS 87924 - 88793 1314 ## COG0191 Fructose/tagatose bisphosphate aldolase - Prom 88910 - 88969 6.9 93 43 Tu 1 . - CDS 88996 - 89952 912 ## COG1284 Uncharacterized conserved protein - Prom 89993 - 90052 5.9 + Prom 90104 - 90163 4.3 94 44 Tu 1 . + CDS 90187 - 90681 694 ## COG1666 Uncharacterized protein conserved in bacteria + Term 90687 - 90728 8.3 95 45 Op 1 . - CDS 90698 - 91381 687 ## EF1164 HD domain-containing protein 96 45 Op 2 . - CDS 91403 - 92368 1116 ## COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D 97 45 Op 3 . - CDS 92365 - 94746 1915 ## COG1199 Rad3-related DNA helicases - Prom 94767 - 94826 3.3 - Term 94790 - 94847 14.5 98 46 Op 1 . - CDS 94864 - 95382 561 ## EF1161 hypothetical protein 99 46 Op 2 10/0.000 - CDS 95396 - 96757 1293 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 100 46 Op 3 . - CDS 96776 - 97105 569 ## COG1440 Phosphotransferase system cellobiose-specific component IIB 101 46 Op 4 . - CDS 97125 - 98078 1172 ## COG1446 Asparaginase - Prom 98112 - 98171 9.7 102 47 Op 1 . - CDS 98248 - 99546 1388 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 103 47 Op 2 . - CDS 99543 - 100307 759 ## COG2188 Transcriptional regulators - Prom 100338 - 100397 7.3 Predicted protein(s) >gi|284795520|gb|ADDQ01000029.1| GENE 1 1 - 127 200 42 aa, chain - ## HITS:1 COG:SP1070 KEGG:ns NR:ns ## COG: SP1070 COG4120 # Protein_GI_number: 15900939 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 42 1 42 288 67 85.0 5e-12 MIVSAIGQGMLWALLGLGIFMTYRILNFPDMTTEGSFPLGGA >gi|284795520|gb|ADDQ01000029.1| GENE 2 152 - 1141 1095 329 aa, chain - ## HITS:1 COG:SP1069 KEGG:ns NR:ns ## COG: SP1069 COG2984 # Protein_GI_number: 15900938 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 1 325 11 339 344 293 52.0 3e-79 MKNKRLTFVVSLLAIYLIGAFFVNQKVTNSKKETVTVGVLQFVSHPALDEIYKGVEEGLK ENGYDKGKNLEIILQNGQADQSKLAIMSQQLVQKKADVLIGIATPAAQALANTTQEIPII LGAITDPVSAGLVKDNQKPGGNITGVSDQSPLSAQMDLLKELIPAAKKIGILYASSEENS RYQVAEAQKAAEAKGLTVKTYAVPSSNEIAQTVQVMTKETDVIYIPTDNTIANAMQTVVG EANRTKTPIIPSVDTMVEQGGLATVGINQHALGVQAGKMAAEVLSGKSQPATTPIYTFNT GDTIINEKQAQKLGITIPAELAKKSKLIN >gi|284795520|gb|ADDQ01000029.1| GENE 3 1143 - 1607 -159 154 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256958742|ref|ZP_05562913.1| ## NR: gi|256958742|ref|ZP_05562913.1| predicted protein [Enterococcus faecalis DS5] # 1 154 1 236 236 236 62.0 3e-61 MHSPNCPFVWQLFLFNNKTIIYRAFLPLKVKLRFVILCLVKILGTLFYKCQDLAATRISI LVRIAGALFYEWDNVLFVHLVLLITLEGQTAASIRSLHLLCHFVPIVVIRSKKTTTYPKC LGVVVVFMQNKNHIDGSSMWSFFLLEYNQHRYTF >gi|284795520|gb|ADDQ01000029.1| GENE 4 1869 - 1976 176 35 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MALVISMTILVSLWLIQSQKQAVKVPVKIERNRNN >gi|284795520|gb|ADDQ01000029.1| GENE 5 2040 - 2699 667 219 aa, chain - ## HITS:1 COG:no KEGG:EF1250 NR:ns ## KEGG: EF1250 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 219 5 223 223 320 99.0 2e-86 MEELKEALYELRQRKLLMITAIVALVLIIGSIIFIPTMQKNIRAAQVESLVAGPIKSEKV SVLDYKTADKKIQETGAMSVMFAKPSGKQYDQMVKLFNSDKMNEFHRSLYIYPLIYNAGK AQEQYNVSGDEITLVFFENGKEKTRTVVEKSMDLKTQLIPELNRLPMAGVLKDQQKAAQE AEKEAAKTAETQTTTSMTGVAQSTETTTESTDTVPETGE >gi|284795520|gb|ADDQ01000029.1| GENE 6 2919 - 4631 1790 570 aa, chain + ## HITS:1 COG:SP0966 KEGG:ns NR:ns ## COG: SP0966 COG1293 # Protein_GI_number: 15900843 # Func_class: K Transcription # Function: Predicted RNA-binding protein homologous to eukaryotic snRNP # Organism: Streptococcus pneumoniae TIGR4 # 1 565 1 551 551 514 50.0 1e-145 MSFDGVFTHSMVHELTETLVSGRISKIHQPYENEVVLVIRAKGKNHKLLLSAHPSYARIQ LSTITYSNPETPPNFVMMLRKFLDGAILETIQQIENDRVIHFTFSKRDELGDLQNIVLIV ELMGRHSTIVLVNQSSGKILDAIKHIGMSQNSYRSLLPGATYIEPPKPMGLNPLTASKEE VFALLSTAPELNGRYLQQHFQGLGKDTADELSARLLSQPNEKMAIWTEFWSSVTEAVVPT LTVTEKKEYFTPIPYQSLVGEQTTYATLSELLDAFYSGKAEKDRVKQQGGELIRKIENEL KRNQKKLKKLQQTLADTENAENYRRDGELLTTFMAQVPKGATEVELPNYYEENAPLRISL NPALSPNQNAQKYFQKYQKLKNAVRVVKTQIQQTQQEISYLESVVAQLEIATPMDIEVIR EELIEQGYLKRKKNKKQKQPKKSQPDLFYATDGTPILVGKNNLQNDQLTLRTAKKTDYWL HAKDIPGSHVIIRDAHPSEETLTEAALLAAYFSKYRLSSQVPVDYVQVKHVHKPNGAKPG YVIYENQRTLYVTPTEESIKKIQQNKASAS >gi|284795520|gb|ADDQ01000029.1| GENE 7 4787 - 5050 418 87 aa, chain + ## HITS:1 COG:no KEGG:EF1248 NR:ns ## KEGG: EF1248 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 87 1 87 87 111 100.0 9e-24 MVFLHIIFGMFAFIGALGLGVAFRDSFTELSTPKKAAIILSYVGAIGSTVLGFTSATKNP FVLAATVVLVVAFSIALFKKSSKETSK >gi|284795520|gb|ADDQ01000029.1| GENE 8 5124 - 5465 430 113 aa, chain + ## HITS:1 COG:no KEGG:EF1247 NR:ns ## KEGG: EF1247 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 113 1 113 113 221 100.0 5e-57 MSLTISEEVKQRLAPFLTETNTFLLVANDGSNPYSSAEGCCMIGDRFIIVPVDQAEAPYT ETIANDSFHVYTSTYDQMFLTGHLQLVIHPNAGTITLKNESGILDSNVDIYQH >gi|284795520|gb|ADDQ01000029.1| GENE 9 5504 - 5962 576 152 aa, chain - ## HITS:1 COG:lin1603 KEGG:ns NR:ns ## COG: lin1603 COG2707 # Protein_GI_number: 16800671 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 2 142 4 144 153 113 56.0 1e-25 MESWLFLLLIALIAFVAKNQSLLIASVVVLALKALPNSAKIMSWLSDKGINLGVTIISIT ILVPIATGQIGLKDLIQSFKTPMGWLGILCGILVAVLSSKGVGLINQSPEITVALVFGTI LGVVFLKGIAAGPIIASGMMYVIITTFQAFQH >gi|284795520|gb|ADDQ01000029.1| GENE 10 6436 - 7485 1369 349 aa, chain - ## HITS:1 COG:ECs4289 KEGG:ns NR:ns ## COG: ECs4289 COG0673 # Protein_GI_number: 15833543 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Escherichia coli O157:H7 # 1 348 1 345 345 353 51.0 2e-97 MTVKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFTTDLNEL LTDPEIELITICTPAHTHYDLAKQAILAGKSVIVEKPFCDTLEHAEELFALGQEKGVVVM PYQNRRFDGDYLAMKQVVEQGFLGEINEVETHIDYYRPGSITEQGPKENGSFYGLGIHLM DRMIALFGRPDQVTYDIRNNEVSEAVDNYFDVDLHYGSKLKVKVKTNHSVASPYPRFIVH GSNGSFIKYGEDQQENDLKAGIMPDAPGFGEDSPMYYGEVTYRNGNGDWVKKQIKTPVGD YGRYYDAVYETLKNGAPQLVTEEQALTNIEILEAGFLNPSPSVYRLKEN >gi|284795520|gb|ADDQ01000029.1| GENE 11 7510 - 8943 1783 477 aa, chain - ## HITS:1 COG:L179659 KEGG:ns NR:ns ## COG: L179659 COG2723 # Protein_GI_number: 15672157 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Lactococcus lactis # 1 475 1 475 478 741 74.0 0 MEHHQLKAFPQDFLWGSASAAYQVEGAWNEDGKGASVWDEFVRLPGRTFKETTGDLAVDH YHRFKEDVALMKQQGLKAYRFSIAWTRILPEGRGQVNQAGLKFYSDLIDELLAAGIEPMV TLYHWDLPAVLQKEYGGWESRKIIADFVAYAKILFDAFRGKVRYWISLNEQNVFTSLGYQ LAVHPPGVTDNKRMYEANHIANLANAAVINAFHELEMPGKIGPSFAYTPVYAVDAHPANV LAAENAEDLLSHFWLDVYLWGEYPIAALNYLKEQGVAPTIKEGDLALLRSAKPDFLGINY YRTDTVAANPLDGVGIGKMNTTGKKGSETESGVPGLFKKVNNPYVERTNWDWAIDPQGLR IALRRLASRYQVPILITENGLGEYDTLTEDKHIHDTYRIDYLRSHIQAIQEAITDGVSVI GYCTWSYTDLLSWLNGYQKRYGFVYVDQDETQKGSLERIPKDSYYWYQKVIETNGLI >gi|284795520|gb|ADDQ01000029.1| GENE 12 9186 - 9899 810 237 aa, chain + ## HITS:1 COG:lin0390 KEGG:ns NR:ns ## COG: lin0390 COG2188 # Protein_GI_number: 16799467 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 234 1 235 237 167 39.0 2e-41 MRTNTRYKEIYAAIKQDIEAGVYPINQKLPQGRLLAEKYQVSELTITKALHLLVQEGYVV RRRGSGSFVQDFQNRTITKFSPLTGTYSTYDGKVESVVLGFATEVPEPWVTEKLSITEEE LVYKIIRLRIIEDVPSIIEYTWMPVALIPNLTMKELKVSIYQYISEQLHQKIQSARVSIS GIRPSALEKKYLNLTDNDFLMRAEQIAYLGNGHIFEYSIANHIPSEFTFETVLIAEK >gi|284795520|gb|ADDQ01000029.1| GENE 13 10170 - 10700 593 176 aa, chain + ## HITS:1 COG:no KEGG:EF1241 NR:ns ## KEGG: EF1241 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 12 176 12 176 176 317 100.0 9e-86 MSLLVLSTLLSACSTVSGSPASQSAPAPDEVLATSIGTYENRTLLVPDGRLALTALHKGK DYQGKPMFYVLFELTNTTEKTQNIQLMIQSFMEVSQTVHGKAQNLQYAVLTDSPFQDKLD RLADEINPGETIQGAYPYEFINENKPVHFKFRDRLLSLDEPIASEEITITEKSLVR >gi|284795520|gb|ADDQ01000029.1| GENE 14 10733 - 11698 953 321 aa, chain - ## HITS:1 COG:lin1838 KEGG:ns NR:ns ## COG: lin1838 COG1609 # Protein_GI_number: 16800905 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 317 1 317 321 364 59.0 1e-100 MVGIKDIAKKAGVSISTVSYALNGSSKVTEETRTRIQAIAEELNYVPNMAARTLKRRQTN IIGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSGKKSHLFIPEKMVDGAIILDWTFP TKEIEKFAERGHSIVVLDRTTEHRNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEK GYDSQERLAVSTRELTRFGIPYEIIQGDFTEPSGYAAAKKILSQPQTEPVDVFAFNDEMA IGVYKYVAETNYQMGKDIRIIGFDNSELGAFVQPRLATIAYSKHRWGMVAAEKIIHLMRG EPAESEHIYTRFIEGESFPSE >gi|284795520|gb|ADDQ01000029.1| GENE 15 11714 - 14989 2981 1091 aa, chain - ## HITS:1 COG:lin1839 KEGG:ns NR:ns ## COG: lin1839 COG3459 # Protein_GI_number: 16800906 # Func_class: G Carbohydrate transport and metabolism # Function: Cellobiose phosphorylase # Organism: Listeria innocua # 3 1086 4 1078 1086 865 43.0 0 MQIKKLKQADTVATFLETGDLKELNSCGMMINQLEGNPLDGSMNQLYLRIITGDTINYRP MIGSNSQSDFYLSDNQLTWRGEFEAVRYQVDFRLGPSNQWFWRVNVTGTGLVDIVYGQDI GLATKGAVQSNEAYVSQYLDHHIWQEGEELVVLSRQNQPQNEKFPALIQGSFQKLAGYST DGYQFFGRSFKQTNTPEALRKRYLANEVYQYEFAYTALQTEAVQLTNESKEFVFYGAVTE THPQALAEPFLSKEALQAIYETVTFDSLEGTQDYPPKLLGEPITGNPLTEEELAALYPLQ TQIEKVGGQTYSFFTENYHHVVLQEKEIAMERAHGHILLSGKGLTVDEPLLSTTVYMYGI FNSQVVLGNTTMNKLMSNSRNALNVMKRSGQRIYILENGLWRLLTMPSAFEMGLNSATWY YKLPKDTIRVRTFTSPDSRVIQLEVTSQKDAYMWAVSNHLLLGPEEVPTYQLEQAGKTLR VTGNHSATENYYPELTYALTVDKSFQVTDSTLFGGAEADLLVLAIEKTQKFSLLITGSIE DQALVNTPLDFEKAESQYLAFINGLLHHFELTHTDSSVQQMNQLTRWYTHNMLVHYLSPH GLEQYGGAAWGTRDVSQGPTEFFFATQQPKIVASIIQHLFENQFEDDGNWPQWFMFDRYE EQKASESHGDIIVWPLKVVTDYLEQTADYSILATEIPYTSRKDNHKTKETASLFEHLKKE INYIEQHFLPETFLSCYGDGDWDDTLQPYDNRLKEQMASSWTVALTYQVLKKFAALITEI DATYSLHLTILVAGIKNDFQKYMLADETIPGFIYMETPETFEQMIHPNDQKTGIQYRLLP MTRSMLAELLTPEQVSHHLEIIEKELTFPDGVRLMNKPANYRGGVSTNFKRAEQAANFGR EIGLQYVHAHIRYTEAMAKIGQRDKTWQALMQINPVQLKEVVHNAELRQANAYFSSSDGD FKTRYESQENFGKLKDGSIGVKGGWRIYSSGPGIYLNQLITAVLGIRQKAQSVVFDPMLP EKLSGLTLTYQLFDKPVTYKFYPNQSAKIVIDGQEVPFKFEENPYREGGMEVQKDEVLSL LNEASVIEIYH >gi|284795520|gb|ADDQ01000029.1| GENE 16 15007 - 17157 2486 716 aa, chain - ## HITS:1 COG:lin1840 KEGG:ns NR:ns ## COG: lin1840 COG1472 # Protein_GI_number: 16800907 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase-related glycosidases # Organism: Listeria innocua # 1 712 1 717 723 635 48.0 0 MKENQLIQLVEEMTIDEKINQLLQLAAAFYSDKAEEKTGPMSELGLSQETIDTAGTTLGV SGANEAKRVQKEYMQNHRLNIPTLLMADIIHGFRTIFPIPLALGSTWDEAAVEKMAEISA KEAAVSGLHVTFSPMVDLVRDPRWGRVMESTGEDPLLNSRLAAAMVRGYQGENLKEDNWR VAACVKHFAAYGGALAGRDYNTVDMSERQLREMYLPGYKAGLDAGAKLVMTSFNTVDGIP ATGNQWLFRDVLRNEFGFEGVVISDWGAIKELIPHGVAKDEKQAAELAIKAGVDIEMMTT CYPDYLKELLEEGRIAETLIDEAVMRILKLKNELGLFENPYRGADEQAEAEVILSKEHRE IAKKIAQKSMVLLKNENILPFTPQEKIALVGPGAQSQDILGAWSWQGKKEEAISLVAGAQ KLTTNLLVAQEPFDYFEPTAAAIEEALTLASQADKVVVALGETDWMSGEAASRSDIRLPE KQLAVVAQIIEKNPNVVVTVYSGRPLDLQGIDVAKGIVQAWQPGTEGGNALAEILWGEYN PSGRLSMSFPETVGQVPIFYNVDNTGRPYESAPEEKYVSKYLDVSNYAKYPFGFGLSYSH FSYQPIQLSALTFTKEEPVTVSVLVKNDSPIAGEETVQFYVRDLVGQVVRPIKELKDFQK VWLEPKEEKEVQFLLSEDMVRYVHSDNQVTSDAGEFIVMIGGNSRDVQTATVTLNE >gi|284795520|gb|ADDQ01000029.1| GENE 17 17162 - 17926 652 254 aa, chain - ## HITS:1 COG:lin0348 KEGG:ns NR:ns ## COG: lin0348 COG3568 # Protein_GI_number: 16799425 # Func_class: R General function prediction only # Function: Metal-dependent hydrolase # Organism: Listeria innocua # 3 247 4 252 257 171 36.0 1e-42 MKVATYNVRVDTEYDQDWQWSFRKEAVCQLINFHDWSLCCIQEVRPNQVRDLKAYTTFTC LSAEREGDGQGEGLAILYNEQKIQAIDTGYFWLSETPQQPSIHPEAGCPRIALWGLFKET TQNTPFLVINVHLDHISAHARLAGMTVILEELHDKIAQYPTLLMGDFNAESEEEVHQLVQ KKFQDSKNLATHYGPRGTFQNFTYTKPWAELEEIDYIYVKGWQVQQTASLTDSIDGRFPS DHFPLEAEVCIEER >gi|284795520|gb|ADDQ01000029.1| GENE 18 17907 - 18824 767 305 aa, chain - ## HITS:1 COG:TM0077 KEGG:ns NR:ns ## COG: TM0077 COG3458 # Protein_GI_number: 15642852 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acetyl esterase (deacetylase) # Organism: Thermotoga maritima # 3 297 23 324 325 164 34.0 2e-40 MNEYFEFWEKTKEELQKIPLDIHRRVIDYPLENVQVEQVDFLSFLGERIFGYLLLPKTAG KQPIVIDCLGYMNHIQEPWQFAHWTQIGCACFVIDNRGQGGLTKDRVPYQTIWHEAPMGR GFLDKEDWYQRRLFADHLRSVEVVRTFTEINQDQIILRGGSQGGGVVLMVNSLVDFPILA TFADVPSHSCLENRVAEGTGSYQIIHQYLQEHPQAHEKIAAVLPYFDSRHFVSQIKNPVF ASVGSHDPICPMKDFFPSYHQIKARKAVRVYWKKGHGGGETTQIRREMRQIQQLLQEVKN ESSYV >gi|284795520|gb|ADDQ01000029.1| GENE 19 18817 - 19410 496 197 aa, chain - ## HITS:1 COG:no KEGG:EF1235 NR:ns ## KEGG: EF1235 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 197 1 197 197 251 98.0 2e-65 MNKLFAYEGWYYRIFSFIANLIIINFLFLITCITGIFSGVGLIALYRTIYRLYREKDIPV LRTFWTALKNNIMRGFILTGVLFVAFLLGGIVVTSLFKIATSLGFLAIFLLSFVALFLTS FLFLFSVFNWSVKKTLGETVYVVLSNSANAIILFILPLLTFVFFYKFNLFLYIALGFGTT AFLQVAFFQKVLGVEHE >gi|284795520|gb|ADDQ01000029.1| GENE 20 19467 - 21065 2235 532 aa, chain - ## HITS:1 COG:BH1913 KEGG:ns NR:ns ## COG: BH1913 COG1653 # Protein_GI_number: 15614476 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus halodurans # 90 420 76 411 551 96 25.0 1e-19 MKKVLGGLLVATAVVSLAACSGGKKKASSDVSIKDRYELDEKTPAWKLDKKKEPTKIKWY INSDWTALPFGKDVTTAQIKKDLNVDIEFISGDDSKLNAMISSGDMPDIVTLTEKTGQAA LKADSWAYSLNDLAKKYDPYLMKVVNQDTFKWYALEDGKTYGYPNYSNTKADYESGNIPV NDNFVIREDVYNALGKPDVSTPENFEKVMQQIKEKYPEMTPMGFTTVGDGAGPFLDKLQD FLGVPLEDKNGKYYDRNLDKEYLEWLKTFNDVYRAGNISDDSFTDDGATFDEKVKQGNYA TMLVAGTSGQGGNFTEFMKKSGTRYIAIDGPSSTSGRKPTLNQTGISGWLSNYITKDAKD PAKVTQLFTYLIDEPGQILTKYGVEGVTYAYNDQGKIDYLPEVKKLEQTDNDAYNKKYGI SRFLYFNNDRVNKLKVPMESALTQMQEWGKGKLVPHFVIENINPDAGTPEARANEAIETK LNTTVISMIRAKDDKAFDKSLEDYKAFLKSNKWDAIEKIKSEKMAENRDKLK >gi|284795520|gb|ADDQ01000029.1| GENE 21 21083 - 21964 694 293 aa, chain - ## HITS:1 COG:BS_lplC KEGG:ns NR:ns ## COG: BS_lplC COG0395 # Protein_GI_number: 16077779 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Bacillus subtilis # 6 292 10 294 295 220 41.0 3e-57 MIKRKSKENKWFYFFNTLILVLFSLLIIVPIWNILVSSVSSSSGLAGKGLVLWPKGFTLE NYRKVFSDSSIPRAFLISVLKTVIGASTHTLFCAIVAYGLSKSRLVGRNIYTTMGVITMY FGGGMIPTYLLIKSLGLLDTFWVYIIPALFSYYDVVILMNFFREIPPSLEESAKIDGASE FQIFYKIFLPLTKPALATIILFNGVGQWNDFMTTKLYITKEYLYPLQMKIYEIIVQSNLS TMTESGSTDMVVQATTRGVQLATIVITTIPILIIYPLLQKHFIGGMMAGAVKE >gi|284795520|gb|ADDQ01000029.1| GENE 22 21979 - 22890 970 303 aa, chain - ## HITS:1 COG:BH2112 KEGG:ns NR:ns ## COG: BH2112 COG4209 # Protein_GI_number: 15614675 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type polysaccharide transport system, permease component # Organism: Bacillus halodurans # 4 299 39 335 337 225 41.0 6e-59 MKKLKKFYDQRQLHWMVLPGVAFMIVFNYIPIYGIIIAFKNYTIVDTVSSAPWVGLENFR IIMEDSFFWEAVRNTLAISLMKLFLGFAIPIILAVMIFEMRDGHLKKVIQTISYIPHFFS WIVLGGMLISWLSTNGFINQVMMSLGLMNQGVNHLLDPDKYWWIAVLSDLWKEVGWGTIL YLAGMSRIDPTFYEAARIDGASKLTQIRTITLPLLAPIISLNLILNVSGLLGSNLDQTLV LMNAQNQNKSEVINSFVYRMGLTQGDFSYATAVGLGISVISIVLLVITDRITRKMNNGRS VIL >gi|284795520|gb|ADDQ01000029.1| GENE 23 23182 - 24006 887 274 aa, chain - ## HITS:1 COG:L42411 KEGG:ns NR:ns ## COG: L42411 COG1408 # Protein_GI_number: 15673582 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Lactococcus lactis # 2 271 3 277 278 240 44.0 3e-63 MVKKIGLSIMLLFFFLIIALPIYAWKIEPNLVHVNQVTLGKKNQREPLNVVQLSDIQVSE FYETKRLDKVIKKVNREKPDIIVFTGDLFDNYAKNPQQKEPMIEKLKQLQATIGKYAVWG NHDYGGGASAVYDEVMEASGFTVMKNQGETVTLADGRRLFIGGLDDSLLGNPSVSETLSY RETYDYALLMTHEPDVADAFIGTGTQLVLAGHSHGGQIWIPFYPITNVLAEKYTRGLYQL DQETQLYVNTGLGTTAIHARFGVIPEITHFTIYI >gi|284795520|gb|ADDQ01000029.1| GENE 24 24214 - 24309 191 31 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLAGLFSVTGMILLGILFCLIGYQTFRKHHH >gi|284795520|gb|ADDQ01000029.1| GENE 25 24330 - 25013 400 227 aa, chain - ## HITS:1 COG:no KEGG:EF1229 NR:ns ## KEGG: EF1229 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 226 1 226 227 407 98.0 1e-112 MSTMRETQSRCGENKNTKDSQLRQAVNYKDLTGQKFGELTVVAPTAKRKEGLIVWACRCS CGSYTEASRRQLIRGYRTKCAHHRYQTMLKKNYHELVVVRIESIQQTMKAYCLCSCGQSC WVRCENLLNGHTKSCGHRKKKDYRQRVAGVIPGKLQSKRPKNNSSGHKGVSQTASGKWLA YISLKGKRHNLGIFTKKSEAILARKLAERRLFQPILQQEIVTTNKEV >gi|284795520|gb|ADDQ01000029.1| GENE 26 24955 - 26445 1034 496 aa, chain - ## HITS:1 COG:no KEGG:EF1228 NR:ns ## KEGG: EF1228 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 496 1 496 496 937 99.0 0 MTTLLDELLDQEFRDKLLIYQTFMNSEGPLLKEEFYGYFDLSTQKLESLCRQINYECTQI SSRSQILFPAKGLISAQKLSQIDYQALRKYYFDQSLMAKLLLDVGLYQKHTIQEFSQIHF MSKSKIYAFSYKLNLILANWRIKLKSTGLVGEEKNIRSFCFQCLYYFYGSNQERLPNILL ENSPGIKQFINDLQLMYQRTFSLNQSAQLFILLTIQRFRVFSDHVVDSFTEVHVPSCLQH AFEKIYTSETPLFKEDFGKETSYIFLFLSLNEYIDSPIVFPDKLTMLDEFIDHMNSVIPF FEKRITVETKEKLKLICYRWDRLYFSVAAFIPAKQSSFFEERFPQIHRALDGFIQKTESL YQKRFLMYERVHLYYDFMFCLLNDRSFCAIEKTIHVFVDFSGGEDYNRFIAKIIASFNYM DVMIDHKLTLETDLYLSDFYSSKVRCRQLTWRHLPETKDWQVFAEVVRELRKGETQKNEH YERDPIEMWREQEYEG >gi|284795520|gb|ADDQ01000029.1| GENE 27 26857 - 28113 1403 418 aa, chain - ## HITS:1 COG:SP1472_1 KEGG:ns NR:ns ## COG: SP1472_1 COG0431 # Protein_GI_number: 15901322 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Streptococcus pneumoniae TIGR4 # 1 187 1 187 187 257 65.0 2e-68 MKLIGIVGSNADSSYNRLLLQYIGKEFYKMFDLEILEIKDIPMFNQSKDQTNSVLIQNMN RKILQADGVIIATPEHNHTIPAGLKSVLEWLSFKIHPLENKPVMIVGCSYYDQGTSRAQL HLRQILDAPGVNAIVMPGNEFLLGKAKEAFDENGNLIAEGTRQFLESTLQKFVEFIDVIS KLEGAKPKDLPEDLHAKGTIETTIEGVDMAADDWVEQAAEVVQAVEGDTYVKLDRGILTV DQLNYFLKSMPMELTYADSNNQFLYYNKKMAAEEMFAKRQPGQVGNPLANCHPPKALKNV EWVIQQLRSGKTDAIRVHVPMHGPDTYVVHNYQAMYDDNGNYAGINEYILDFKPIVDWYL KQTGQELVGGKNVDAVSGASKKEAPETADSVSSASVHEEESATEKPTVDSVSSASIKE >gi|284795520|gb|ADDQ01000029.1| GENE 28 28132 - 28740 705 202 aa, chain - ## HITS:1 COG:SP1471 KEGG:ns NR:ns ## COG: SP1471 COG0431 # Protein_GI_number: 15901321 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Streptococcus pneumoniae TIGR4 # 1 202 1 201 201 248 60.0 7e-66 MKKIIGLVGTNSEQSTNRQLLQFMQHYFAQEADIELVEIVDFPMFNKPEDKALPEIVKTV AEKIEAADGVIISTPEYDHAVPASLMNALSWLSYGIFPFVDKPVMITGASYGTLGSSRAQ AHLRQILDAPELKARIMPSSEFLLAHSLQAFDENNALKDSEQIDKLAGLFADFCVFIEIT EQLKHAHAQNKKEAENFSWETI >gi|284795520|gb|ADDQ01000029.1| GENE 29 28767 - 29702 950 311 aa, chain - ## HITS:1 COG:SPy1138 KEGG:ns NR:ns ## COG: SPy1138 COG1477 # Protein_GI_number: 15675115 # Func_class: H Coenzyme transport and metabolism # Function: Membrane-associated lipoprotein involved in thiamine biosynthesis # Organism: Streptococcus pyogenes M1 GAS # 1 302 1 303 312 301 51.0 1e-81 MQQSQTIYLMGTVIDVFVDHEEPEKILEEVHQRLITYEQRFSANDSTSELMAVNQQAGQK PVSVHPELYQLIALGKKHSCDPASHLNVTIGPLVQTWRIGFKDARVPSEEEIKACLKKIN PEKIHLNPLKQTVFLEEEGMKLDLGALAKGYIADLLIAYLKEVHVTSALINLGGNIVTLG PSMHQNKKWRIGIRNPQESRETISLLVEVANQSVVTSGIYERSLTEAGRVYHHLLDPTTG YPLETEMASITIISDASVDGEIWTTRLFGYPIPEALEILNQLDGIEGVIITQDQQILYSS GLADTLHIIHS >gi|284795520|gb|ADDQ01000029.1| GENE 30 29922 - 30791 834 289 aa, chain - ## HITS:1 COG:no KEGG:EF1224 NR:ns ## KEGG: EF1224 # Name: not_defined # Def: Cro/CI family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 289 6 294 294 535 99.0 1e-150 MNIQRFIEKRKARGLSQSELAKGICTQVTVSRFEKNGQVPTLKILIQLCNRLELPLGELF PRVGIKQPEILEKMEEAEFFLITSEHDQLQTILKNIPFDEIKDSQLLLEYYYLQGFVMIF QNASLMDCLFTFEKLLFEEQKYTSDIYRLLAFTGIGMAYAKEGEIEKAEFYFNKVFKEIY LYTIQSMEDTWRVLNVVFHCGVFYAEKGDLETSDALLEYAISICSDNHVTYYLARAAFQL AKNALAEEKPQEQILELLQDARAYAKINKNRILLEAIQTLKETILSKNN >gi|284795520|gb|ADDQ01000029.1| GENE 31 30997 - 32325 1283 442 aa, chain - ## HITS:1 COG:MA1276 KEGG:ns NR:ns ## COG: MA1276 COG0402 # Protein_GI_number: 20090140 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Methanosarcina acetivorans str.C2A # 4 436 15 440 442 251 34.0 2e-66 MKTLIKNVHILTMDEQFSEIKAGYLVIEEDTIVELASMTTLDEKRVAANQVIDGQNGILI PGMINTHTHVGMIPFRSLGDDVPDRLRRFLFPLEQFMTKELVGCSSDYAIAEMLLSGITS FCDMYYFEDEIAKSCEKMSVRALLGETIIDMPTCDSPEPSGGLFYAETFIRKWQGHPLIT PILAPHAPNTNSPEVLAKIIELSRQYQVPVTMHVAEMTYEMAEFEKAYQKTPIAFLEELG YLSEPFILAHCILATDEDLASLAATNGKARVAHCIGANTKSAKGVAPIKQMLDQGIIVGL GADGPSSGNTLDLFTQMRMVANFHKTAHQDRSLFPAKEIVYLATMGGAKTLGLAEQVGSL EVGKKADITLIETQSVNMFPIFDAYSALVYSANASNVEAVWVNGQQLVANKELQQANLKE IKEKLYQAMNTFVKEAKKRAAL >gi|284795520|gb|ADDQ01000029.1| GENE 32 32309 - 34048 1627 579 aa, chain - ## HITS:1 COG:CAC0887 KEGG:ns NR:ns ## COG: CAC0887 COG1001 # Protein_GI_number: 15894174 # Func_class: F Nucleotide transport and metabolism # Function: Adenine deaminase # Organism: Clostridium acetobutylicum # 5 562 19 569 570 270 30.0 4e-72 MNVDVLLKNVWLYQTVTQTFVQRNVAIKNDKFYYIYEEENVNLQPQKTINAENQWMIPGL IDAHMHIESSMTTPTIFSKAVVRYGVTTVIADAHEMANVFGLEGLKAFMAAETELDIFHA IPSSVPSTTPELETTGGIIGLAEVAELLKEPKVICLGEAMNFKGISYEPDSLIRQIIDLC QKQRPTMPLEGHCPKIEDQELADFLYSGITSDHTHQFPKTLKEKIEAGVFIQFQNKSITP ENIQVIVDNDFYNYASIITDDVMADDLLKGHLNENVKKAVHAGLPIEKAIYMATYTPAKR MGLHDRGEIAPGKKADFLLLNDLESFDINTVYKSGKVVFEKGEPFHYPEKIEEFPAAYQQ TIQCKKLTEEDLLLKVATTKETVRCNVIQKQEIGTFTERITKEIPVENGLLQWQKANCAL LIVMERYGKNGNISFSLMDQPLSEKGAIATTWAHDHHNLMVMGNTIEDILLAQNELLAMQ GGYLVASDQQVMATCPLPIGGILSQAPIEQLGASLQKVRQAMQALGYQNMNEIMSFSTLS LPVSPAIKVTDFGMMDTKSQRFYPLVFPEDGVLFHENTH >gi|284795520|gb|ADDQ01000029.1| GENE 33 34069 - 35133 1274 354 aa, chain - ## HITS:1 COG:AGl890 KEGG:ns NR:ns ## COG: AGl890 COG0687 # Protein_GI_number: 15890562 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 10 354 6 340 340 143 29.0 7e-34 MKKRVILGTLVAATLLMTACGNSEATTKSESKGGSNALVVSTFGLSEDIVKKDIIAPFEK ENEAKVTLEVGNSADRFTKLKNNPNAGIDVIELAQANAAQGGKEGLFEKITEKEVPNLSQ LTPGAKEVFESGAGVPIAVNSIGIVYNKEKLGKEIKNWDDLWSADLKGKISVPDVATTAG PLMLYVASEHAGQDITKDNGKAAFEAMKELKPNVVKTYSKSSDLANMFQSGEIEAAVVAD FAVDIIQGAAENVTYVVPESGTYANYNTVNIPKKAQNKETAFKFVNARISEESQKAKAIS LNEGPTNQQVTLSEKEAKNKTYGAIAERAKTVDFNFINSQLADWIDQWNRTMNQ >gi|284795520|gb|ADDQ01000029.1| GENE 34 35160 - 36200 1185 346 aa, chain - ## HITS:1 COG:SMb21276 KEGG:ns NR:ns ## COG: SMb21276 COG3842 # Protein_GI_number: 16264528 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Sinorhizobium meliloti # 3 346 6 340 342 300 46.0 3e-81 MTFVDLKDIRVSYDGKQDILKDLNISMEKGELVSLLGPSGCGKTTTLRVIAGLIKPNDGQ FFVDQEELTKVPVHKRNFGMVFQSYALFPHLTIAENVAFGLKLRKESKQTMDQKVTEMLK VCGLESLGDRYPKQLSGGQRQRVALARALIIEPKLLLLDEPLSNLDAKLRVAMRIEIKRI QQQLGITTVFVTHDQEECFSISDKVAIMNNGVIEQYDSPETIYRLPRTKFVAEFIGFENF FSVEKMEAGHYRTQTNQIVKTTNPEPNVTTTVATIRPEDIEIVSEAATNTVAGTVAVRTF LGKSYQYEVETALGTLLVNGTSEQLYETNETIHLAFPAEKLVILEK >gi|284795520|gb|ADDQ01000029.1| GENE 35 36239 - 37018 933 259 aa, chain - ## HITS:1 COG:SMb21275 KEGG:ns NR:ns ## COG: SMb21275 COG1177 # Protein_GI_number: 16264527 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Sinorhizobium meliloti # 10 256 10 256 259 189 44.0 6e-48 MRKQKGLSVIAILVFLFLFLPLCLIVVTSFGTAAAIQFPIKGFTLDWYAKALQSETFMDS FKLSLLIGVLATVLALIVGIPASYALARYSVRGRNFIKSFFLSPTVIPGIVVGYTLFQYI VIKLGLPVFQGLLMGHFLISLPYIIRVVGSSMEQLDYSMEEVAWTLGCTRLRAFIQIVLP NVSSGIFAAFMLAFVNSFNNVPVSMFLSGPGVTMLPTSLLSYMEYNYDPTVSAISVLLML LTMGLMFLIEKTLGLASIA >gi|284795520|gb|ADDQ01000029.1| GENE 36 37011 - 37847 932 278 aa, chain - ## HITS:1 COG:AGl889 KEGG:ns NR:ns ## COG: AGl889 COG1176 # Protein_GI_number: 15890561 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 21 257 74 310 326 175 39.0 9e-44 MNKKVPYLIVAPGLVLLLFFLMIPLITSILPTIFTDHGLTLNQYVTFFKDDYNVSIFWRT IRVSLIVTGISIVLGIPTAYFIAGVSKKWRGFLMAMTLFPLLTNSVIRSFAWINILGKNG VVNTLLLKTGLIEQPLNLLYTEFAIIIGSVYLFLPTMIMTLVGVMENIEGEMLEAAETLG ANPMTAFRKIVLPLSIPGTIVGSILVFTGTLTAYTTPQLLGGNQKMMMSTFLYQKANTLG DWQSASVLAFIMILTTLIVMKGLDMVAKKVDRREANHA >gi|284795520|gb|ADDQ01000029.1| GENE 37 37762 - 37977 76 71 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLVINGIIKKNNNSTSPGATIKYGTFLFIRTLLVRFFTSSVYARKTYISTHFHLFVRFQT RTFVYFFGKGY >gi|284795520|gb|ADDQ01000029.1| GENE 38 38055 - 38459 485 134 aa, chain - ## HITS:1 COG:no KEGG:EF1217 NR:ns ## KEGG: EF1217 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 134 1 134 134 235 98.0 3e-61 MSKCLGLLVILFVLTGCSGSRNSQQEVVIEKSANNDKARQFVDQKNPHLGTQLEAESYTK QEAIEFLQNGLGIPTNDSAFHYTFKQSNKGSYVVQIISEKNSVSKENELFGYYQVYQDGI IVKMMEKDQTFQEN >gi|284795520|gb|ADDQ01000029.1| GENE 39 38708 - 39427 777 239 aa, chain + ## HITS:1 COG:no KEGG:EF1216 NR:ns ## KEGG: EF1216 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 238 1 238 239 466 98.0 1e-130 MKQKNLLTYQSLAALLLVFSLFSFDPSVSFATRSGKTPVSVELEIGGLPGDESVDDAIDP DLENPNTSFDLLFIPKEFTFETQAISGDLTAVPIRPSEGNTHTMRHFGMGDVRGALTGWH VTAEIPHMRNEAHSLLGIITFQLTGGYARYDKTLRRFFMTNTMYGLDFSEDPAAPDFPTN PIIIGNGATLMSNAGDRKGQGMWSGRMTDISLAIQTPVSQLFPGVYTGSIIWNLISGPA >gi|284795520|gb|ADDQ01000029.1| GENE 40 39462 - 39524 84 20 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLRQIEGANSPYDIKKRLEE >gi|284795520|gb|ADDQ01000029.1| GENE 41 39542 - 40624 990 360 aa, chain - ## HITS:1 COG:no KEGG:EF1215 NR:ns ## KEGG: EF1215 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 360 1 360 360 661 99.0 0 MDTLYRSWQLSGWLYHDIFVIIVAIIFIVISGILVISLIRRRSTRRLVPYALILLVYLAV VHFAGLIFFGMFRSVTIEEKSATFYSEKTKGLTSIERMIIPNGRTNGISTSNSLFQVISV NSQTGERMWSKRLGWRDYLIGQTDQYVVLNNADNEAIYLLDTKTGKKQFSEADLVKKFPE LKDCLSSDFVDYRFMDNRYLYIYGLNNRYYQLDLKNWQLKQDPTFKEVFQTQEAPKWTVD SNESQIGQELSSEERTTVQGKLEEQLIAPVLLGKKDEANYYVLSYKKRQSNQAIVGLYNW QKKTYEWQTPLLLTKENVPIEAFQVEDALFIKVPRYLYKINLNNGNQEYQFDYRWGQVIR >gi|284795520|gb|ADDQ01000029.1| GENE 42 40782 - 41486 921 234 aa, chain - ## HITS:1 COG:SA2007 KEGG:ns NR:ns ## COG: SA2007 COG3527 # Protein_GI_number: 15927786 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Alpha-acetolactate decarboxylase # Organism: Staphylococcus aureus N315 # 6 234 5 234 234 233 51.0 2e-61 MSEQYVYQHGTLGGLMESLMAGTAEIGTLLTQGDFGIGTLEGSNGEIILLDGTLYHANQT GEIAILEGEELTPYAAVTRFQEDGAFPVSTETDENIKAQILEKISPNFFAAIKISGLFAK MHVRVAPKQEKPYPPFVEAARNQPEFTAENIQGTVVGFFTPKLFHGASAAGFHLHFISED HQFGGHILDFGIKQGTVSWMEAAELRQHFPVHDADYRNKEIDIAKALSAIEEAE >gi|284795520|gb|ADDQ01000029.1| GENE 43 41498 - 43150 1995 550 aa, chain - ## HITS:1 COG:SA2008 KEGG:ns NR:ns ## COG: SA2008 COG0028 # Protein_GI_number: 15927787 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Staphylococcus aureus N315 # 5 547 8 551 554 695 64.0 0 MSKKGSDIIVESLINHEVPYIFGIPGAKIDGVFDALVDKGPELILARHEQNAAFMAQGIG RLTGEPGLVIATSGPGASNLATGLVTATAEGDPVLALAGQVKRSDLSKLTHQSMNNAALF SPITKFSTEIQDPETLSENIANAYRIAKTAKKGATFLSIPQDVTDSPVTGEAIKPLSAPK LGHASAETIAALAERIKQAKLPVLLLGMRASARKVTAAIRELVAITGLPVVETFQGAGII SKELEEHFFGRVGLFRNQPGDRLLKRSDLVIAIGYDPIEYEARNWNAEKDARVIVIDEVQ MEIDQYMQPEEELIGDMSKNILKLSEAFSEPILTEDAQDYLETLQEKLTIKEVKTSTIEN RLHPLEIVQTLQEKTTNEMTVTVDVGSHYIWMARHFRSYEPRHLLFSNGMQTLGVALPWA ISAALVRPNTQIISVSGDGGFLFSAQELETAVRLKQNIVHIIWNDGSYDMVKFQEEMKYN RSSGVDFGPVDFVKYAEAFGAKGVRVHSQAEFAAALEEGMQTEGPVIIDVPVDYSDNQEL GKTLLPDQLY >gi|284795520|gb|ADDQ01000029.1| GENE 44 43428 - 44336 1118 302 aa, chain + ## HITS:1 COG:BS_lytR KEGG:ns NR:ns ## COG: BS_lytR COG1316 # Protein_GI_number: 16080618 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 22 300 24 304 306 249 43.0 6e-66 MSKGKKIFAIIFGIILVLFLAVVGMGAKLYWDVSKSMDKTYETVERSKKSQVNLNNKEPF SVLLLGIDTGDDGRVEQGRSDTTIVATVNPRDKQTTLVSLARDTYVDIPGQGKQDKLNHA YAFGGASLAMDTVENYLNIPINHYVSINMAGLKELVNAVGGIEVNNNLTFSQDGYDFTIG KISLDGEQALSYSRMRYEDPNGDYGRQERQRKVIEGIVQKVLSLNSVSNYQEILTAVSDN MKTDLSFDDMKKIALDYRSAFGKVKQDQLQGTGFMQDGVSYQRVDEQELNRVQQELKNQL NN >gi|284795520|gb|ADDQ01000029.1| GENE 45 44409 - 45110 577 233 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256962193|ref|ZP_05566364.1| ## NR: gi|256962193|ref|ZP_05566364.1| predicted protein [Enterococcus faecalis Merz96] # 1 233 1 233 233 340 100.0 3e-92 MKVKAVLKQDIQRRIFWFSGSYLIMFAILGLVPPFLNYFFGDMFDVNDYISAMNFINSLL LPILVVSFVVDDQGSRISDYYFKTRQGRHLYLFSLLICGLCLGLLAGFLLIGVCALLSMV LSVAVSWKVLTVLIASYILLPLFYLVLGITMYLFFHIQGVTLTIFNLVFVMIVPILINIG ASTIGWVVLLQSPFYILTFLGMGSGTMDELFYCLVSILVLYGINHWKILRIDF >gi|284795520|gb|ADDQ01000029.1| GENE 46 45114 - 45947 1029 277 aa, chain - ## HITS:1 COG:SA1745 KEGG:ns NR:ns ## COG: SA1745 COG1131 # Protein_GI_number: 15927505 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Staphylococcus aureus N315 # 1 273 1 284 290 173 38.0 4e-43 MQLENISKTIDKKEILTNISITVGPGEIVGLIGPNGAGKTTTMKIMSGLIVNFQGKVVGQ ERIGVLIDGPKYFPNRTARENLNYFRALSKESYSVDYVESLFDMKNYGKKKVKDFSLGMK QRLGMALALINKNELLILDEPMNGLDPDGVQATIQTLKHLAKELHIGIVISSHILGDLDK LCDRAYFIKNGAIIQTVTLGKEVSVYQFTFDEENEDKVSEISALFDGVEQRHPLWLISEA DYPLFLKELVLNDIIPLEMKKHALNLEDVYFSLVEGE >gi|284795520|gb|ADDQ01000029.1| GENE 47 45960 - 46055 126 31 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVAFGMVVISVKLIGIGLFCYYELKAEKNCS >gi|284795520|gb|ADDQ01000029.1| GENE 48 46299 - 47762 1200 487 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0981 NR:ns ## KEGG: PEPE_0981 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 226 482 6 262 263 279 55.0 1e-73 MHTFLTKSSQKKIRLFNYLLEKNKWRTIADLKDLLNVSSKSILLYVEELSDIFKQFNGKI VLKNENNQRFYMYKDANFPIYNVYLHYYRQSYNFNLIDYMYKYPDRNLEDYADAQFTSVS TVFRYAKLLVKYFKRYQMTFHTFSLELENQESMSRSFYYYFYWQSSRTGDWPFTISEKLI EQYIEQFEEVYDIELLRLPKRIFSYWLAIVLERAPQKRVELLDEIKQVADSDKAFPLVKM WLKKCNLSLPEEEIYFIYRIIYSFGVIDGNPRYEVSHALAHKLHHTTSYQAVLLLNNLTQ KDYQFQLDLSDSELIFNFVAFHERSQFFFGNTDLFFNQSYINEIKRQNTEIAQLMENFHR DLQEQATKEVKEILKNWEQLFLNYYYVLDYYDLLLKKLTPIKILIADDLHHTHRLWLMNK IKNYFGKAYPLAFYDYEVDASEVDLVISNYYFDTKGTTLLLMKNIPTERNWRNLEKILYK ITHCNDK >gi|284795520|gb|ADDQ01000029.1| GENE 49 47950 - 50061 1865 703 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0977 NR:ns ## KEGG: PEPE_0977 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 40 702 30 680 681 396 35.0 1e-108 MNKIAKTSFVFIITLIGFALGPQIGEATELVKKISNNTKLSDYGYFKALPGVYTPTSHTF VMQSGAETEVIPLEGNANSSQLTVDENSPIGSAMIRNVGWYQGKKVSVKVSILKNLPSRA GGTIFFEKERFLTLSLLGDVKVTYEFFDEENQPIQLKTSFNTYDLSKKYYFGIYFPLELL YASKPTNNFSRTWNDESGGYWVTYHNETETDAINSQKQQLQILTRPKEKLTFIYRNWNNN QPLEIPYRTDFVAKPEFGGALANSLTLEKPQPVSELKAQQIMPNVAEDRKLSNLEVRFNL TSLLQSQQYEPGNINIQNFNGEDVTALFSQEMQGEELVLTALQPQDSRLTATTLLYTVAV KWREDAPAVDNRFIDTEGNLTLPYTIQTKATNRDKVFNQATEGILKVNYNSKVNLLFVDE NNQPLKEPMSQPGILTQAFDVSSEYPEIPGYYPVKNPVEQDQGTFKQEEQIIVHRYRKNL EFQLKNSGEVIPVSRFTKEAEVAYSLKHEAGKTIRVMARFGGEEQLVKEYPTAPETVDDQ VKMKIPDNWLDQEVEFYAMNETGQVSNNEKKIVSLEKGPQLKLPDVLSFGQLEIPVKDSY VKLPQEAELAITDESQLDKSQWKVKVKMQQMMKNQNNQTLSKGLSFIKEGKRTPINDVEQ TIASGSGSQMLNLANTLELTLVPSDVAGSYQGQLVWNLEDAPI >gi|284795520|gb|ADDQ01000029.1| GENE 50 50054 - 50398 289 114 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227518468|ref|ZP_03948517.1| ## NR: gi|227518468|ref|ZP_03948517.1| hypothetical protein HMPREF0348_1451 [Enterococcus faecalis TX0104] # 1 114 1 114 114 186 100.0 3e-46 MKKRSGYLVFMLALFFLASANSVHAQQVDSEVGITFYQKNYKDQVVPFEKITPVNEAKQP NRETINSDKGLINQLLPNTGEKQQLELLTIGLLLISIILFVVARRRKKGWKADE >gi|284795520|gb|ADDQ01000029.1| GENE 51 50415 - 51443 902 342 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0979 NR:ns ## KEGG: PEPE_0979 # Name: not_defined # Def: cell surface protein # Organism: P.pentosaceus # Pathway: not_defined # 9 342 14 350 352 295 48.0 2e-78 MRQRKTLKRWGTFIPIFFLSLVSWLVLWSAPASAEENQINFEAEAILPENQQSSVSYYDL KVSPGSTQEFKLRLKNVSDQPIKVRVDANNGLTNKNGALDYSQHGKKLLGSPTFEELISP SQTVELQGKETKEVSFQLNVPKNGFEGTILGGFYCYELTDGKEKEIKGFSLTNKFAYTIG AKLVVENKKMEPAFQLTKVKPGLENGYLTLFATIENPEPVLMSQLKMNAFVTKKGKSEKI RELSKQISVAPRSQFELPISWNDEALKKGLYELTIQLEDQNSKKWTLKKAFEIKGEDEKL NEEAVKITRPASNILLYFVIGSCILIILALFIYILKLRQNKS >gi|284795520|gb|ADDQ01000029.1| GENE 52 51430 - 52095 979 221 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0980 NR:ns ## KEGG: PEPE_0980 # Name: not_defined # Def: cell surface protein # Organism: P.pentosaceus # Pathway: not_defined # 1 221 1 217 217 200 52.0 3e-50 MKKQILASVALSALTLSIAGQAVYANEANLQDTQADVTLKAGSGKDVKPVVDPTGDTDED PATGAEGALSIPYASSISFGEQEIQQGDATYFAQNEKPFVQVNDTRGGAEGWALSASISE FKGVTNQNVLKGAQLTLANGQVTTESNQSEAPTIASNSLTLNDSLQPVMSAEKGKGAGAW AALFQGEKGKNENVKLFVPRAGVEAQAYTATITWGLSDAPA >gi|284795520|gb|ADDQ01000029.1| GENE 53 52281 - 53624 1932 447 aa, chain - ## HITS:1 COG:pli0044 KEGG:ns NR:ns ## COG: pli0044 COG0446 # Protein_GI_number: 18450326 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Listeria innocua # 1 445 1 445 454 361 45.0 2e-99 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSCGMQLYLEGKVKDVNSVRY MTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDI PGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDI LDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVV AVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALAT NARKQGRFAVKNLEEPVKPFPGVQGSSGLAVFDYKFASTGINEVMAQKLGKETKAVTVVE DYLMDLNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYA DFFFQPAFDKPWNIINTAALEAVKQER >gi|284795520|gb|ADDQ01000029.1| GENE 54 53810 - 54502 474 230 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149011191|ref|ZP_01832496.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP19-BS75] # 1 229 1 223 226 187 44 2e-46 MNLLIIEDDPMVAYIHQKYLEKLIHQPTIYTAATIAEGLQLTKEKQPALVLLDVHLKDGN GLTYLATIRDEKIDTEVILITAANELENVKRSLHLGVLDYLVKPFSFERFQQSIENYQKK TAQFTLETKELSQTKVDQLFHYSQTNARKNEQDLQNMSLEKGLTQATLQLLLKKIDKFTD YFTIQELSEASQLSHVSVRKYVLFLEKNNLLESKNSYLKVGRPYQSYRRI >gi|284795520|gb|ADDQ01000029.1| GENE 55 54483 - 56033 1557 516 aa, chain - ## HITS:1 COG:SPy1107 KEGG:ns NR:ns ## COG: SPy1107 COG3290 # Protein_GI_number: 15675090 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase regulating citrate/malate metabolism # Organism: Streptococcus pyogenes M1 GAS # 1 509 1 507 513 328 36.0 2e-89 MKRGGKLWCFLSVIFIATLIIMITFFYGVTTVQTIKEVRKNQEQALLAVGEQLAIEPNVI EALKNDHYSDELEAYTVRLGEIHQLDFIVIMNMQGIRLTHPDRQKIGKHFEGGDEVRALK GEEHLSVSQGSLGESLRGFVPVYDQGKQIGVVAMGIKMTSLSQLIERTKNDYTVSVLLSV GFGFILAIVVSYYLKKQLHDLEPREIARLLEERNAMLEETKDAILVIDTDQNILLANIEA TKMYHNITNSEENLLGKKLSALVLSPEKLIVHSKTEQFYRQNGQDYFVSIAPINVRKKTI GHVIFLKNATETFIVAEQLVSTTTYASALQSQSHEFMNKMHVIYGLVDLEDYEALKHYLA DLLKPEKEFAQRLAILVRNPILAGFLSGERIKFAEIKTQLAIEIYPEIPPNKRDEDTQNL IAIYRYIHRFLMEQPLPEEIIETIDYQPGSLTTTYSFAYPKEQLERFEQEFFTSYLARLL ENAEATLTWENQQNNWLVIRINVHYEGAEENEPIDY >gi|284795520|gb|ADDQ01000029.1| GENE 56 56181 - 57506 1464 441 aa, chain + ## HITS:1 COG:SPy1109 KEGG:ns NR:ns ## COG: SPy1109 COG3493 # Protein_GI_number: 15675091 # Func_class: C Energy production and conversion # Function: Na+/citrate symporter # Organism: Streptococcus pyogenes M1 GAS # 15 441 20 442 443 616 79.0 1e-176 MEKKLHATAANETDWRNKLTKTRIGSVTLPVYLVTASIILVTALLEQLPVNMLGGFAVIL TMGWLLGTIGGNIPILKHFGGPAILSLLVPSIMVFFNLLNQNVLDSTDILMKQANFLYFY IACLVCGSILGMNRKILVQGLMRMIVPMALGMILAMGVGTLVGTLLGLGWKHSLFYIVTP VLAGGIGEGILPLSLGYSAITGLPSEQLVGQLIPATIIGNFFAIMCSGLLSRLGEKRPEL SGQGQLIKITNSDDLSDALEEDKAPIDVKLMGAGVLIACTLFITGGLLQHLTGFPGPVLM IVVAAFLKYLNVVPKETQRGSKQLYKFISGNFTFPLMVGLGMLYIPLKDVVGMLSWQYFV VVISVVFTVIATGFFVSRFMNMNPVEAAIVSACQSGMGGTGDVAILSTANRMNLMPFAQV ATRLGGAITVITMTAIFRMLF >gi|284795520|gb|ADDQ01000029.1| GENE 57 57538 - 58707 1470 389 aa, chain + ## HITS:1 COG:SPy1110 KEGG:ns NR:ns ## COG: SPy1110 COG0281 # Protein_GI_number: 15675092 # Func_class: C Energy production and conversion # Function: Malic enzyme # Organism: Streptococcus pyogenes M1 GAS # 8 385 7 385 388 547 75.0 1e-155 MSTKDVKELAIEQAKKLGGKLEVCPKVPIETKADLGIAYTPGVAAVSSAIHEKKERAYEL TTKKNTVAVISDGSAVLGLGNIGPEAAMPVMEGKAALFKRFAGVDSIPLVLDTQDTEEII QTVKFLAPTFGGINLEDISAPRCFEIEQRLIDELDIPVFHDDQHGTAIVVLAALYNSLKL INKKIEDIHVVINGGGSAGLSITRKFLAAGVKHIIIVDRAGILSETDTALPPHHAEIAKL TNREHRTGDLATALEGADVFVGVSAPGVLKPEWIQQMNEQPVIFAMANPVPEIFPDEALA AGAYIVGTGRSDFPNQINNVLAFPGIFRGALDARAKKITIEMQIAAAKGIAKLIPDNELT PTNIIPDPFQEGVAKVVAESVRNAVKETN >gi|284795520|gb|ADDQ01000029.1| GENE 58 58781 - 59629 1054 282 aa, chain - ## HITS:1 COG:no KEGG:EF1599 NR:ns ## KEGG: EF1599 # Name: not_defined # Def: transcriptional regulator Cro/CI family protein # Organism: E.faecalis # Pathway: not_defined # 1 281 1 281 281 337 67.0 3e-91 MRVAGEKIKTARKKKKLSQAELAKGICTQATISNIENKNVCDSLDIFSSVCLRLDLQVEE CIEGSSEKKLESLLNKVEELCFYFKHDEAYDLLKDYPDDIESSNRILETKFFYYKGITSL LGKKNNSEALFYLHRGSEISRDINIYNILSMNAIGILYELEDDIEKAKVYYDKSLQLLSE FKLDYPLEQCRIYYNTAKFYSLIKDYAKSIELSDKGIEINRTHSSIYSLDCLLYEKAFNK QMLGLDAVEDYRIAYYFTRFFENKKLLAYIEKDMQEFNISFK >gi|284795520|gb|ADDQ01000029.1| GENE 59 59729 - 59791 230 20 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFDLLALLTGISVRGNAPHQ >gi|284795520|gb|ADDQ01000029.1| GENE 60 60130 - 60435 524 101 aa, chain - ## HITS:1 COG:SPy2112 KEGG:ns NR:ns ## COG: SPy2112 COG3906 # Protein_GI_number: 15675862 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 4 98 3 100 101 96 71.0 1e-20 MTEHNHDHDHEGHEHITLVDEQGNETLYEILLTVDGQEEFGKNYVLLYPAGIPEDEDVEL QAYSYVENAEGTEGDLQQIETDAEWDMIEEVFNTFMAEEEE >gi|284795520|gb|ADDQ01000029.1| GENE 61 60473 - 60895 504 140 aa, chain - ## HITS:1 COG:SPy2113 KEGG:ns NR:ns ## COG: SPy2113 COG0816 # Protein_GI_number: 15675863 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) # Organism: Streptococcus pyogenes M1 GAS # 1 136 1 136 139 196 72.0 8e-51 MRIMGLDVGSRTVGVAVSDLLGWTAQGIEIIRINEEEENFGFERLGELVKEYEVTKFVVG LPKNMNNSIGPRAEASMAYGDKIQELFQLPVDYQDERLTTVQAERFLVEQADASRAKRKK VIDKLAAVMILQNYLDAHSR >gi|284795520|gb|ADDQ01000029.1| GENE 62 60892 - 61161 440 89 aa, chain - ## HITS:1 COG:SPy2114 KEGG:ns NR:ns ## COG: SPy2114 COG4472 # Protein_GI_number: 15675864 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 89 1 89 89 128 73.0 2e-30 MGFTDETVRFDFDDNRKKAISETLETVYRALEEKGYNPINQIVGYLLSGDPAYIPRYQDA RNLIRRHERDEIMEELTKYYLANHGIDIK >gi|284795520|gb|ADDQ01000029.1| GENE 63 61597 - 62349 789 250 aa, chain + ## HITS:1 COG:lin0587 KEGG:ns NR:ns ## COG: lin0587 COG2966 # Protein_GI_number: 16799662 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 249 1 249 250 241 52.0 1e-63 MTPAHLDLLLETCLLAGKIMIESDAEMYRVEDTMSRIALASGNYRMVSYVTQTGLFVGID GTSTIRMVQVMKRGIDLEKISRVNQLSRAYVAGDFSLEELLNKLKVIDSEHRHFPISARI VSAAVVSATIMILFGGVWSDLFLTFLIGGCGYSLYYFSLKFLKIKFLSEFLASLFIGAAA ILSVKLGLGQSQDLIIIGCVMPLVPGVQITNALRDLLAGHYLSGVSRGTEALMTSGMIGF GIAFVFQLFY >gi|284795520|gb|ADDQ01000029.1| GENE 64 62364 - 62855 407 163 aa, chain + ## HITS:1 COG:lin0586 KEGG:ns NR:ns ## COG: lin0586 COG3610 # Protein_GI_number: 16799661 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 5 151 7 152 152 157 55.0 7e-39 MLGIVLVQFIFSFLASAAFAIIINVPRRSLVACGLTGSVSWMLYWVIVEVFSGNAALGSL IGAVGVAAVSYLFSKILKMPVTIFNIPGIVPLVPGGLAYQAVRNIVIGNYEKGAYFTVQA VMIAGAIALGLVASEVFNQNIRSFREKRESLGFIRRKRNKIKK >gi|284795520|gb|ADDQ01000029.1| GENE 65 62907 - 63773 923 288 aa, chain - ## HITS:1 COG:lin0922 KEGG:ns NR:ns ## COG: lin0922 COG3689 # Protein_GI_number: 16799993 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 1 288 1 279 279 267 48.0 1e-71 MIRFIILIGYMGLMMYLQISGELNQYINIHYNYLAVLSMVLAFIMAIVQLILWNQADPSM QKKHEDMHQHGGHEHHGHQHNLEKPSQRGLAYLLLSLPLIVGLLFPTVSLDTTIVEAKGF NFPVSKESVGDPDMQTQYLKPDTSMYFNKTDYDKQMAKAMKQYDGQSVISITDENYLEIM ELIYNYPSQFAGKRISYKGFVYNSKREESVDQFVFRFGIIHCVADSGVFGLLVHFPEHTQ FQNNDWVTITGTVELSYYPPFKRQIPTVQVEKVKADQAPKNQYVYRSF >gi|284795520|gb|ADDQ01000029.1| GENE 66 63792 - 64706 909 304 aa, chain - ## HITS:1 COG:SPy0576 KEGG:ns NR:ns ## COG: SPy0576 COG0701 # Protein_GI_number: 15674665 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Streptococcus pyogenes M1 GAS # 1 304 3 297 300 290 53.0 3e-78 MFQFLPNSVLQMSTIFLSIIIEALPFVMLGCLISGALHVFLTPERVKKVLPKNKFLSICV GSFLGFFFPSCECGIVPIVHQFVKKDVPTHTAFAFMLTAPIINPIVLFSTYVAFSGATKF VIWRVLGSMIVAWVIGIWLAYFRKESILTEKELAQIKEEQVAHTHEHVDESRSFWKNGWS ALTHSIDEFFDTGRYLIFGSLLAAIMQTYIPTGALMQLGHSKILAILVMLVIAATLSLCS EADAFIGSSLLSLFGTGPIVAFLVFGPMVDIKNLLMMKRYFKMSFIVQFVLIVALVVTIY AAVV >gi|284795520|gb|ADDQ01000029.1| GENE 67 64917 - 65723 999 268 aa, chain - ## HITS:1 COG:SP1225 KEGG:ns NR:ns ## COG: SP1225 COG1235 # Protein_GI_number: 15901087 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Streptococcus pneumoniae TIGR4 # 3 268 2 269 269 377 69.0 1e-104 MDSEFAFNISVLASGSTGNSLFIETNQKKVLVDAGLSGKKITSLLAEVNRKPEDLDAILV THEHRDHIHGVGVLARKYKLDVYANEKTWQAMDPMIGKVDVAQKHIFEMGKVLTLGDMDI ESFGVSHDAIAPQFYRFHRNNRSFVVLTDTGYCSDHIRGTIENADAYLVESNHEIEILRA GPYPWSLKQRILGDKGHLSNDDGALVMADVLGDKTKRIYLGHLSKENNTKLHARMAMEST LKQKDLGVGEAFKVYDTDPDSASELFQI >gi|284795520|gb|ADDQ01000029.1| GENE 68 65780 - 66634 726 284 aa, chain - ## HITS:1 COG:no KEGG:EF1196 NR:ns ## KEGG: EF1196 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 284 1 284 284 525 100.0 1e-148 MDFKRIEWIFFLAFLGLNIFLFGIYREGQQEESNVSSSSQTESIESRLEKDNISYKGTLS SERLEGYYLSGEQTNFSAALKIQREKNKNFLRNGLQIADNTLTSVPSKNYFIDPKKIDKD LSTFLNEKNALLFGDEYQYLPEFSHLKEPTAEIVAAQSYKGIPFRDDTAKLSILADTSGE LWKISKYSQTHIENIEELRDKTDLYSNRDAIDTLYMNNRIPSNSKITFIKLAYSRIYKIR EKNVYVPVWFVGISTGEDSVEIEQVNAVSNTIITNNTVPKVEKH >gi|284795520|gb|ADDQ01000029.1| GENE 69 66634 - 67941 1065 435 aa, chain - ## HITS:1 COG:lin0317 KEGG:ns NR:ns ## COG: lin0317 COG4863 # Protein_GI_number: 16799394 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 12 420 12 429 440 62 21.0 2e-09 MKLSEWITRIGLILMVILSIYFSVNIWLNSAKKIPEMKSGSQVTTAVNEKAIGDVYLPLQ LIRITDGKAMQSNRETLISNVQNDIKMATFGKLTQVVTKNAEQLKRYNQMEQGIELLYQG PFLISDYASIYNLSINFTNFNELTDQYFTKIQLDFNENKIRFLDYDQANVYEAPMTVNKA RLMGIINKEGLQYQDVSENTLTKQGQCYLTNDMKLKKYSYILASQPVTRFRNAFFNETED IQTNEDSQDLTYTSKEERLFAEEKLGKIDFKGTLPEENKRDSIYNQSFSYVKRLGTNMGN LRYFDRTKDSVNYRTFVEGFPVFSNDLKGQVDIRITNNDGAAPSVTINTSVNTIQVPIPS EEEVTLESTEKLIKRLETAGAKKEKIQSAVIGYTWQTIEEVKQVVDLSPEWYVLYNNNWY TATDLVKQLPSLEVG >gi|284795520|gb|ADDQ01000029.1| GENE 70 67941 - 69770 2048 609 aa, chain - ## HITS:1 COG:lin0316 KEGG:ns NR:ns ## COG: lin0316 COG5002 # Protein_GI_number: 16799393 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 4 609 3 610 610 526 46.0 1e-149 MKKKVHFFQSVNFKIALSFILLLLIAIQIIGGYFIRELEATTISDFKKNMDSQVVQLSNT LSTQMSNKDLERSDVDANLKKALSDFSNADISEARIVDDKGIIRATNDLNQQNIIGKKND YRDLNDFTSKKYQALDNDKRVYVNVQPIQSPTGETVIGVLYVKSNLENKYQEITNTASIF FTASIIAAAISIIVTLLIARSITKPIGEMREQAIRIARGDYAGKVEVHGKDELGQLAETF NQLSERIEEAQETMEAERNRLDSVLTHMTDGVIATDRRGKVITINEMALSLLNVKNENVI GTSLLELLDIEEDYTLRKLLEEPDELLIDRSTSDREEDQMIIRVDFTMIRRESGFITGLV CVLHDVTEQEKNERERREFVSNVSHELRTPLTSMRSYIEALSEGAWENPEIAPNFLKVTL EETDRMIRMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRRE FTKRDLWVELDTDKVIQVLDNILNNAIKYSPDGGVITCRLVETHNNVVFSISDQGLGIPK KDLGKVFERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLPY EPYEEDWWE >gi|284795520|gb|ADDQ01000029.1| GENE 71 69777 - 70481 1005 234 aa, chain - ## HITS:1 COG:lin0315 KEGG:ns NR:ns ## COG: lin0315 COG0745 # Protein_GI_number: 16799392 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 2 234 4 237 237 357 81.0 1e-98 MKKILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDG LEVAREVRKTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGA TNAKEAEVTTQSELTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREH LLQTVWGYDYFGDVRTVDVTVRRLREKIEDSPSHPTYLVTRRGVGYYLRNPEQE >gi|284795520|gb|ADDQ01000029.1| GENE 72 70655 - 71320 930 221 aa, chain - ## HITS:1 COG:SP1778 KEGG:ns NR:ns ## COG: SP1778 COG0580 # Protein_GI_number: 15901607 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Streptococcus pneumoniae TIGR4 # 1 221 1 222 222 195 59.0 6e-50 MKKAIAECLGTFILVFFGTGTAVLGNGMEGIGTTGIALAFGLTIVAAAYSIGTISGAHLN PAVSIGMWLNKRITTMELIYYVVGQIVGGLIASFALLSILKGAGKSIENLGQNGVGELSV AGALTVEIILTFIFVLVVMTVTSAKKGNASLAGIVIGLTLTMIHLVGIPLTGTSVNPARS IAPAVFAGGSALSELWIFIVAPLIGGLLAALVAKFVLDTEE >gi|284795520|gb|ADDQ01000029.1| GENE 73 71474 - 72334 1149 286 aa, chain - ## HITS:1 COG:CAC1624 KEGG:ns NR:ns ## COG: CAC1624 COG1307 # Protein_GI_number: 15894902 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 4 281 2 277 280 214 41.0 2e-55 MNKEKIALLVDSGTDVPEALVKQYGMYVLPLQIIYPEKTYTDKVDITPEEVYQRLEKEIP STSLPDGATIQAIFDKIKEAGYEKVLAVTISSGLSGTYNVVRLLGEQTEGLDVFVLDTKN IGIGAGIQAIRAAELIETGLGWQELQQKLTEEVANAKVFFNVATLEYLQKGGRIGLVTSI LGNALKLNPIISCNEEGIYYTVAKSRGRKKSLDKTFELVTNFIGEAPRFRLAVAHGAAEE EAKEMMERLKAAFPQAEEIYFGTISPALVVHTGPGLLGVGIQLLND >gi|284795520|gb|ADDQ01000029.1| GENE 74 72327 - 72896 689 189 aa, chain - ## HITS:1 COG:no KEGG:EF1190 NR:ns ## KEGG: EF1190 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 189 1 189 189 330 100.0 1e-89 MDEIEKSLQNWGQQLENVHLPRWHELPDIELYMDQVITLIEKYLSPLITLEKHTLLTSSM VNNYVKHGLIPAPVKKRYNQKHLAFLIAITLLKQVLTLPEIKQGILFQGATVGIREAYNL FCQEQERAIYVIAAQAQEKEVQAKSQEPMGIEYLAVKAATMSFATKMFSEKVIELEQEYL KEMDEMTHE >gi|284795520|gb|ADDQ01000029.1| GENE 75 73023 - 73661 454 212 aa, chain - ## HITS:1 COG:SPy1044 KEGG:ns NR:ns ## COG: SPy1044 COG4478 # Protein_GI_number: 15675040 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 10 196 3 192 210 100 36.0 1e-21 MMRSKLRLRETLGLICLFLTIVALSITITINFRPLYLFDIQHLNILKDVEVDRVTLIKNY DHLMMYLNNPFEKTLVFPDFPMSDSAAFHFYEVKKLFLLCYGVLLVTLLPSVLYLKYLVK NQRLWTLIRPFQWGMFLPVLFGFFMLIGFDQFFIAFHGLFFNNDAWLFNPLTDPIINALP EAYFMHCFILFFVLLEGLFLIGVLIGKRSLKK >gi|284795520|gb|ADDQ01000029.1| GENE 76 73664 - 74434 1046 256 aa, chain - ## HITS:1 COG:SP1407 KEGG:ns NR:ns ## COG: SP1407 COG0647 # Protein_GI_number: 15901261 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar phosphatases of the HAD superfamily # Organism: Streptococcus pneumoniae TIGR4 # 5 256 3 254 257 317 64.0 1e-86 MKKDYQGYLIDLDGTIYLGKEPIPAGKRFVEQLQEKDLPFLFVTNNTTKSPETVAQSLAN EFDIHVPASLVYTATLATIDYMKETNRGKKVFVIGEAGLIDLILEAGFEWDETNPDYVVV GLDTELSYEKVVLATLAIQKGALFIGTNPDKNIPTERGLLPGAGSVVTFVETATQTKPVY IGKPKAIIMERAIAHLGVEKEQVIMVGDNYETDIQSGIQNGIDSLLVTSGFTPKSAVPTL PTPPTYVVDSLDEWTF >gi|284795520|gb|ADDQ01000029.1| GENE 77 74440 - 75075 819 211 aa, chain - ## HITS:1 COG:lin2501 KEGG:ns NR:ns ## COG: lin2501 COG4470 # Protein_GI_number: 16801563 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 53 139 3 89 91 126 65.0 2e-29 MTDKKTTEKKEKETETAATFTEELTAVLEEIKEEPVKEKKKGEIVTIVNETDIQIGEREY RIVKNHRDAFDPERLGERFSEVLARYDYIVGDWGYEQLRLRGFFDTSNRRAAPDQRIDTL EDYLYEYCNFGCAYFVIERTGERKEKTTHRRRRHKKNNRSNAFVEEKSAPANKNSKPVIR TRKEENKKTTTPKQPSSKKSGKGFTIRQREE >gi|284795520|gb|ADDQ01000029.1| GENE 78 75110 - 76492 1476 460 aa, chain - ## HITS:1 COG:L181858 KEGG:ns NR:ns ## COG: L181858 COG0737 # Protein_GI_number: 15672159 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Lactococcus lactis # 1 453 1 444 447 309 37.0 8e-84 MEEIVLFHTNDLHSHFENWPKIRRLVKAKRSLYQKEGKTVVTIDLGDFSDRCHPLTEATD GRANVAIMNTLAYDLVTIGNNEGIGNSKKQLEHLYDQATFEVVLANLEDPKTQTLPDFCQ AYKIVTTKEGTKLGFIGLTAPFPLTYNPNGWTIKQVEAVLPQLITEVAPQCDVLILLSHL GIDTDFMIAANYPEIQVILGSHTHHLFKDGEKINHVQLAAAGKYGQYIGEVHLFVDADTK QVTSYAKTIETASLEEQATDAKEIAGYLTEGHRLLQAQQIAQIPETLSTDLRQPHAFITV ALKALKEAGQTEVAVLNNGLFLADLPEGIINADQLHEALPHPMHLIKVTLKGSDMSRLIR EMEKSRQFLRKFPIRGMGFRGKIFGELCYDGIRFERNSQTVFWQGKPIQPEQKYTLTTVD HFQFVPFFPTIELVGEVEFLFPDVLRTVVANYLHAHYPIK >gi|284795520|gb|ADDQ01000029.1| GENE 79 76617 - 78305 1905 562 aa, chain - ## HITS:1 COG:SP0613 KEGG:ns NR:ns ## COG: SP0613 COG0595 # Protein_GI_number: 15900521 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Streptococcus pneumoniae TIGR4 # 1 552 1 552 553 694 60.0 0 MSTIKIVPLGGVRENGKNMYVAEVEDEIFVLDCGLQYPENELLGIDVVIPDFTYLEENSE RIAGVFLTHGHADAIGALPYLLSKIQVPVFGTELTIELAKLSVNSHAETKKFKDFHVIDP HTEIDFGQATVSFFKTTHTIPDSIGVSIKTKEGNIVYTGDFKFDQSAIEMYQTDYGRLAE IGKEGVLALLSDSSNAENPAQVASEAQIADEVFDTIRYWEGRIIVACVASNLQRVQQVLN AADRSGRKVVLTGQDFERIIRTAMKLEKLQLPSEDLLVKPKEMKKYAPEQLLILETGRMG EPIKSLQKMANNTHGVVRIEEGDLVYITTTPTTAMETTVAKTEDIVYRAGATVKQISDNL RVSGHANPNDLQLMLNLMKPKYFIPVQGEYRQLAAHADLAHEIGMPYKDIFITGRGDILE YTKGRMSVAGSTTAENIMIDGIGVGDIGNIVLRDRRILSEDGIFVAVVTINRREKRIVSP AKITSRGFVYVKTSKDLMKESSNIVTEIVEKHLGSDDFEWSKLKQEIRENLSRYLFEQTK RRPVILPVIMEATQRKRPKNNA >gi|284795520|gb|ADDQ01000029.1| GENE 80 78336 - 79208 822 290 aa, chain - ## HITS:1 COG:L0093 KEGG:ns NR:ns ## COG: L0093 COG0329 # Protein_GI_number: 15673602 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Lactococcus lactis # 3 288 10 295 297 375 65.0 1e-104 MDLTNATIITAMVTPFQESGEIDFDKLPQLVDYLLANHTEGVILAGTTGESPTLTHEEEL QLFQRMIELIDGRIPIICGVGTNDTRDSVAFVKELATIAGIDAVLAVVPYYNKPNQEGMY QHFKTIAEASELPIILYNVPGRTAASLEVETTLRLAQLEKIVAIKECAGLDAITELIERA PKDFLVYTGEDGLAFATKALGGQGVISVASHVFGSSMYEMYQALEQGNLPEAAKIQRQLL PKMNALFSVPSPAPVKAALNHLGIPVGNLRLPLVACTPEEEQRIIRTLEI >gi|284795520|gb|ADDQ01000029.1| GENE 81 79242 - 79613 333 123 aa, chain - ## HITS:1 COG:L66199 KEGG:ns NR:ns ## COG: L66199 COG0136 # Protein_GI_number: 15673604 # Func_class: E Amino acid transport and metabolism # Function: Aspartate-semialdehyde dehydrogenase # Organism: Lactococcus lactis # 1 118 232 348 358 157 61.0 6e-39 MGDNKLKVVATCVRIPVISGHSESVYIEVKQADASVSAIQELMAQAPGVILQDEPSEQLY PQALNSVNQKETFVGRIRQDVDVKNGFHLWIVSDNLLKGAAWNSVQIAETLHEMNLLRVP END >gi|284795520|gb|ADDQ01000029.1| GENE 82 79595 - 80308 825 237 aa, chain - ## HITS:1 COG:L66199 KEGG:ns NR:ns ## COG: L66199 COG0136 # Protein_GI_number: 15673604 # Func_class: E Amino acid transport and metabolism # Function: Aspartate-semialdehyde dehydrogenase # Organism: Lactococcus lactis # 4 237 3 236 358 317 70.0 1e-86 MGKEYHVAVVGATGAVGTRMIELLAETSLPIASVRLLASKRSAGQEIQFKGQPLIVEELV PESFEGIDLALFSAGGSISEKFAPEAVKRGAVVVDNTSHFRMAKDVPLVVPEVNPEALKN HQGIIANPNCSTIQMMVALEPIRQAFGLERIIVSTYQAVSGAGIRAINELKEQAEDFLEG KPVSEWSAEILPAGSDKKHYPIAFNALPQIDVFSEAGYTYEEWKMMNETKKSWETTS >gi|284795520|gb|ADDQ01000029.1| GENE 83 80515 - 80973 711 152 aa, chain + ## HITS:1 COG:SP0340 KEGG:ns NR:ns ## COG: SP0340 COG1854 # Protein_GI_number: 15900270 # Func_class: T Signal transduction mechanisms # Function: LuxS protein involved in autoinducer AI2 synthesis # Organism: Streptococcus pneumoniae TIGR4 # 4 150 7 157 160 177 55.0 4e-45 MARVESFELDHNTVKAPYVRLAGTEQNGDALVEKYDLRFLQPNKDALPTGALHTLEHLLA VNMRDELKGIIDISPMGCRTGFYMIMWDQHSPQEIRDALVNVLNKVINTEVVPAVSAKEC GNYKDHSLFAAKEYAKIVLDQGISLDPFERIL >gi|284795520|gb|ADDQ01000029.1| GENE 84 81057 - 81791 838 244 aa, chain + ## HITS:1 COG:lin0323 KEGG:ns NR:ns ## COG: lin0323 COG0778 # Protein_GI_number: 16799400 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Listeria innocua # 1 242 1 242 245 268 53.0 6e-72 MNQTIEQLLSHRSVRHFKKQALTDKQKQQLITAAQAGSSSNFLQAYTIIEIKDPELRREL GRLANCEDYVVNTGVFYVFVADLYRHATILSKEGQSLEPLKTPESLLVAAVDTTIAAQNM AIAAESMDLGICYIGGIRNDLDTVAKRLSLPELTVPLFGLTIGVPETLNGVKPRMPFENI LSENHYQSDKLTDMHTYDELLKDYYASRSSNAQTADWSQKSLSYFSYNRRPEVKIFLQKQ GFDV >gi|284795520|gb|ADDQ01000029.1| GENE 85 81849 - 82097 509 82 aa, chain - ## HITS:1 COG:no KEGG:EF1180 NR:ns ## KEGG: EF1180 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 82 1 82 82 88 100.0 7e-17 MADLKGRFDDAKDKVEGTAKEAQGKVTDDKGKELEGKAQSTFADVKDKARDAGDDLKEGA EKLTDKVKEGFEDLKDKFSKDK >gi|284795520|gb|ADDQ01000029.1| GENE 86 82188 - 83066 1210 292 aa, chain - ## HITS:1 COG:CAC1523 KEGG:ns NR:ns ## COG: CAC1523 COG1940 # Protein_GI_number: 15894801 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Clostridium acetobutylicum # 5 284 2 281 288 342 56.0 5e-94 MTEKLLGSIEAGGTKFVCGVGTDDLTIVERVSFPTTTPEETMKKVIEFFQQYPLKAIGIG SFGPIDIHVDSPTYGYITSTPKLAWRNFDLLGTMKQHFDVPMAWTTDVNAAAYGEYVAGN GQHTSSCVYYTIGTGVGAGAIQNGEFIEGFSHPEMGHALVRRHPEDTYAGNCPYHGDCLE GIAAGPAVEGRSGKKGHLLEEDHKTWELEAYYLAQAAYNTTLLLAPEVIILGGGVMKQRH LMPKVREKFAELVNGYVETPPLEKYLVTPLLEDNPGTIGCFALAKKALMAQK >gi|284795520|gb|ADDQ01000029.1| GENE 87 83293 - 83505 243 70 aa, chain - ## HITS:1 COG:no KEGG:EF1177 NR:ns ## KEGG: EF1177 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 70 1 70 70 89 97.0 3e-17 MASWFWLSGGLAVICFMFFLFSLLTSMSFIQHAKEPRSILKETLLSWLMLLLSGGWITIG LLLYFSLKNQ >gi|284795520|gb|ADDQ01000029.1| GENE 88 83498 - 84562 861 354 aa, chain - ## HITS:1 COG:no KEGG:EF1176 NR:ns ## KEGG: EF1176 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 354 1 354 354 638 98.0 0 MSRKKVGVFCLFLFFTFFIIVPKVEATEEMKTKFTVTPVLPENQVSGTSSYYDLILAPKQ SSTIVLDIKNKTDEKLSIVLTLANASTNDNGLIVYNDFDKPLDSSLKVPLTDLVTLENEE VSVPPHQTVSAKMKVKGLDQPIKGVVLGGVYAHLKDEKTEEENQTMGLTSRYGFNVAIAM RSAENAPLTEVNQLKLAKVTPTIALGAKSLKAVIQNPYAAIFPEVRLEGQVIKKGSSKKI AQRTLKNVRFAPNSSMNFHLDLGKQPLDAGTYIFTGRAILQQDEQQSWPFQQEFTINTRE AKKLNQEATVKWVLPTWWLPTFYTFLVITIGAIYSVIWRNNYQKTSEKESENNG >gi|284795520|gb|ADDQ01000029.1| GENE 89 84799 - 85068 480 89 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29375747|ref|NP_814901.1| ribosomal protein L31 [Enterococcus faecalis V583] # 1 89 1 89 89 189 100 5e-47 MKQDIHPNYQPVVFMDSTTGFKFLSGSTKGSSETVEWEDGNTYPLLRVEVTSDSHPFYTG RQKFTQADGRVDRFNKKYGLKDENANPDA >gi|284795520|gb|ADDQ01000029.1| GENE 90 85169 - 86443 1220 424 aa, chain - ## HITS:1 COG:BH3781 KEGG:ns NR:ns ## COG: BH3781 COG1158 # Protein_GI_number: 15616343 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Bacillus halodurans # 1 419 5 423 423 609 71.0 1e-174 MAELENSTLKDIYAYAKEFKIPYYSQMNKKELSLAVIRAQAEKQGFFFMEGILDIVSQDG YGFLRPINYGPSAEDIYISSSQIRRFGLRNGDKVAGKARPPKESERYYGLMHVESVNGKD PEEAKERPHFPALTPLYPEKQLTLETTAGRLSTRMIDVFAPIGFGQRGLIVAPPKAGKTS VLKEIANGITENHPDVELILLLIDERPEEVTDLERSVKGDVVSSTFDQQPQNHTRVAELV LDRAMRLVEDKRDVVILMDSITRLARAYNLVVPPSGRTLSGGIDPAAFFKPKRFFGAARN IEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLSRELAERRIFPAIDIKKSSTR KEELLMTPEQLEETWKLRNNMSGDSLEYTDQFIKMLKRTQNNQQLFEVFHDVSFGKQIKR NPKR >gi|284795520|gb|ADDQ01000029.1| GENE 91 86458 - 87750 1829 430 aa, chain - ## HITS:1 COG:L113067 KEGG:ns NR:ns ## COG: L113067 COG0766 # Protein_GI_number: 15672294 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Lactococcus lactis # 1 418 1 420 421 544 68.0 1e-154 MKKIVINGNRPLKGEVTISGAKNSVVALIPAAILADSPVTLDGVPDIQDVHSLIEILEIM GAKITFENNTLIIDPTEVVSVPMPKGKINSLRASYYFMGSLLGRFGEGVVGLPGGCYLGP RPIDLHIKGFEALGAHVTNEHGAMYLRTDEAGLQGTRIFMDMVSIGATINVMLAAVKAKG KTIIENAAREPEIIDIATLLNNMGAKVRGAGTDVIRIEGVEELHGCRHSIIPDRIEAGTY LAMAAAMGEGIKVRNVIYEHLESFIAKLQEMGVKMTIEEDMIEVHPSHDLKMTTVKTYPY PGFATDLQQPLTPLLLKAQGTGEIIDTIYAQRNKHIPELVRMGADASVEGNMIILNGPNQ LHGAEVVASDLRAGACLVTAGLMAEGTTTIYNVEYILRGYDHIIEKLTALGADIQMLETE EQEGPFEVDQ >gi|284795520|gb|ADDQ01000029.1| GENE 92 87924 - 88793 1314 289 aa, chain - ## HITS:1 COG:SP0605 KEGG:ns NR:ns ## COG: SP0605 COG0191 # Protein_GI_number: 15900513 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Streptococcus pneumoniae TIGR4 # 1 289 1 293 293 388 71.0 1e-108 MPVVSGAEFLKAARKGGYAVGGYNTNNLEWTQAILEAAEAKKAPVLIQTSMGAAKYMGGY KVAKDMITNLVDSMNITVPVAIHLDHGDYEAALECIEVGYTSIMFDGSHLPFEENLKLAK DVVEKAHAKGISVECEVGSIGGEEDGIIGTGELADIEECKQMVATGIDYLACGIGNIHGQ YPENWKGLAFDHLQAIAEAVGSDVPLVLHGGSGIPQEQIEKAISMGISKVNVNTEFQLSF AKATREYIEAGKDLEGKGFDPRKLLAPGKAAIIKDAEEHIDWFGSANKA >gi|284795520|gb|ADDQ01000029.1| GENE 93 88996 - 89952 912 318 aa, chain - ## HITS:1 COG:lin2365 KEGG:ns NR:ns ## COG: lin2365 COG1284 # Protein_GI_number: 16801428 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 12 293 9 290 300 249 46.0 4e-66 MSRLVSTYQRNESIKKIAVMAITALTSAVGLNFFLIPAKVFSAGMNGIAQIIATLLYTNL GIHINTGIFILFLNIPVFILGFVKLGKQSTILSFINVIGISVVTMFVPIVTVTTNPLMNA IMGGVLVGVGAGLSLKMGFNTGGMDIISLILSKTTGKTVGNFMFLLNGIIVLLAGFVFNW ESALYTIISIYCLSQVVDMIHTSHQKVTAMIVTTRPEAVALEVSQQIARGMTLLPSIGGY SGAEGRMIMMVITRYELYDLEQAVYSIDENAFVNILPTQSVLGRFANEDEQRIFHSTGTF PELQSYKVKRYPPKKKLK >gi|284795520|gb|ADDQ01000029.1| GENE 94 90187 - 90681 694 164 aa, chain + ## HITS:1 COG:BS_yitK KEGG:ns NR:ns ## COG: BS_yitK COG1666 # Protein_GI_number: 16078166 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 3 164 2 163 163 171 58.0 4e-43 MAAKEASFDVVSEVNMEEVKNAIQIALKELKNRFDFKGSIADIKLENDKLVVVAEDDYKV EQVKDILFGKLVKRNVPIKNIHFSESEKALGGTARQYGDLISGIDKENAKKINTAIKNSG IKVKSQIQEDKIRVTGKSRDDLQKVMALLRELDLPMALEFNNYR >gi|284795520|gb|ADDQ01000029.1| GENE 95 90698 - 91381 687 227 aa, chain - ## HITS:1 COG:no KEGG:EF1164 NR:ns ## KEGG: EF1164 # Name: not_defined # Def: HD domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 227 1 227 227 414 97.0 1e-114 MKLFERIHQDTEIRQIYDAIGQMEDEEAGWAYHNWFHVTNVVAMTEMILKQLAVSEEYLE AAKIAALLHDVGALQGKAGHALRGKQFAEAYFRKQKICLPYQEEILSSIENHSNGFDSEE LMTLALIISDKLDITTSRVAKAGYFAPGMRQLQFLKKIEIMLSEQEVCVSFTAEEELDLE ELNAFYFMPKVFKAIAAFSEKIQRRPIVLLNNQEWAVPKQKNPSTIH >gi|284795520|gb|ADDQ01000029.1| GENE 96 91403 - 92368 1116 321 aa, chain - ## HITS:1 COG:L142722 KEGG:ns NR:ns ## COG: L142722 COG0252 # Protein_GI_number: 15672718 # Func_class: E Amino acid transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D # Organism: Lactococcus lactis # 1 320 2 322 323 359 58.0 5e-99 MKTILVLHTGGTISMSKVAGGSVAPNEKNPLMEQEALFSGKVHLVVEDIFNIPSPHMTLE RMFQLKERIQKAYSEPIDGVVITHGTDTLEETAYFLDITLEKKIPIVLTGAMRSSNEIGS DGLYNFISAIWTACSDESYDKGVLVVMNDEIHTARYVTKTHTTNVATFRTPTFGPIGTIA KERAFFAKEVLPQEVCDVSSVKGNVHVVKAYAGMGERMFELLNTPETDGLVIEALGAGNL PPETLPALQKMLDNGIPVVLVSRCSNGIAEDIYDYAGGGVGLKKMGVVFARGLNGPKARI RLIVGLNSEKNPAELKEFLEQ >gi|284795520|gb|ADDQ01000029.1| GENE 97 92365 - 94746 1915 793 aa, chain - ## HITS:1 COG:lin0195 KEGG:ns NR:ns ## COG: lin0195 COG1199 # Protein_GI_number: 16799272 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Listeria innocua # 6 785 5 779 779 760 46.0 0 MKSTRKIAVRQVVEFILRRGSIDSRHVSEHTPQEGSRLHRMLQKEAGSLYQKEVSLKIEV PLNGHNYCVEGRADGIFVKETGQVVIDEIKTSEPAFEELPPEKVELFWYQAMCYGHMYCQ QEQLSEITLQLTYYQTTTKQITRQERHFTEAALAEFFTDLMKRYEQWVIFKEEWRILRNK SLKNLSFPYGEYRKGQRELAVAVYKTILSKQRLFVEAPTGTGKTMSTLFPAMKAIGEEEG ERIFYLTAKTITRQVAEDAVKALSEKQAQTKSITLTAKDKICFLTERNCTPEHCPFADGY YDRLNEGLWDLLQHENHLTREVIERYAQKHHLCPFELSLDASLWCDLIIGDYNYLFDPTV YLRRFFEEPQSAEENIFLVDETHNLVNRSREMYSAAISRNAVLQIQKRLQKESVQLKRAC QKVLTTFDDIEAICEEKDTDFFAQRAPIDSLVKQIHRLTEVIAEWLPENQHIEELASILS FYFDCLSYLRISEYYDNGFYTSISLRNYDCVVKQFCVDPAYLLSQRLDKGKASILFSASL TPLNYYQEVLGGGEESLRYRIPYPFPEENQLLMIGSHLQTTYKNREKSYPQISELLGKLS ETKTGNYLIFFPSYAYMDDVYQVFSQRYPQVKTQIQGTDLNEKEREAFLAEFKENPQETF IGFCVLGGIFSEGIDLKGTRLIGTIIVSVGLPQMNPEQELIRTFYQEERGQGFQFAYQIP GMNKVLQAAGRVIRDAQDKGFVLLLDERFELPSVQRFFPPHWLTHRKANTNEQLIQQVKQ FWLKNKENKGGNK >gi|284795520|gb|ADDQ01000029.1| GENE 98 94864 - 95382 561 172 aa, chain - ## HITS:1 COG:no KEGG:EF1161 NR:ns ## KEGG: EF1161 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 172 1 172 172 322 99.0 4e-87 MKKILLVLNHSLAGFGSDEQAQLKPSGKKAPLGPGVTLLPFLQKQGAEIVATLYCGDQYY LENEEEVAKKFIGFAKKFHADAVLCGPAMHYPNFGEMAAHLACKFNAAGIPAIAAMAEEN PAVSHYYQQVPIVKMPKKGGIGLNNSFKQMAQLVVAKANGKETKQLEETSCF >gi|284795520|gb|ADDQ01000029.1| GENE 99 95396 - 96757 1293 453 aa, chain - ## HITS:1 COG:BS_licC KEGG:ns NR:ns ## COG: BS_licC COG1455 # Protein_GI_number: 16080909 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Bacillus subtilis # 1 423 1 425 452 318 39.0 1e-86 MQKFLDWLERVLTPLAKVIGENKYLVAIRDGFLLSTPLLIVGSVFLLIANFPLPQWDTWM SHLLGKDWATMMSVPASASFDVMTILAVVGIAYSLGKQFNVDAMQAGIIALVSFFIVTPY QTLFTPENSSKVYEVTSLPLKWMGSSGLFLGMIVALIATRLFVAIVRKGWTIKMPEGVPP TVVKSFEALIPSFLVVTLMFLVNWLAALTPYGNLQDVIFEFLQTPLLSLGNTLGAMSIAY LFLHFFWFFGINGGSVVGAVFNPVLRALSVENLQAFKDGHEIPNIITGQFQDMFATFGGA GSTLSLIIVMVLFCKSQRIKKLSQLSLIPGVFGINEPIIFGLPIVLNPILLIPFVLVPAI NIIIAYFAMDWGLVPLTNGIQLPWTTPPIISGFLVSGWQGSILQALLLVLGMCSFTILLF ELWMTNIYVKNGKHKKKRVKKLILIPLTSMIYK >gi|284795520|gb|ADDQ01000029.1| GENE 100 96776 - 97105 569 109 aa, chain - ## HITS:1 COG:CAC0384 KEGG:ns NR:ns ## COG: CAC0384 COG1440 # Protein_GI_number: 15893675 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIB # Organism: Clostridium acetobutylicum # 5 104 3 100 102 79 46.0 1e-15 MSKKQIYLFCDAGMSTSIMVNKMMEVVEKHQMPLMITAFPIARAQEVVEAEKPVAILLGP QVRFLLEKTKEQFAPQGIPVAAIAPEIYGMMDGEKALKEALRLIKQNKK >gi|284795520|gb|ADDQ01000029.1| GENE 101 97125 - 98078 1172 317 aa, chain - ## HITS:1 COG:CC2359 KEGG:ns NR:ns ## COG: CC2359 COG1446 # Protein_GI_number: 16126598 # Func_class: E Amino acid transport and metabolism # Function: Asparaginase # Organism: Caulobacter vibrioides # 4 281 20 313 327 139 32.0 7e-33 MTWGAIATWRMAHDGLLKAAEELQQGGAAGTAVEQLIKEVEDYPFYKSVGYGGLPNEEGI LEMDAAYMDGDTFAIGAVAGITDVKNPISVAKALSKEKFNSFRVGAGATKYSMLHGFERK NMLTERANQWWQKRLKEIQENQLNPYDGHDTVGAITLDQTGSMAAGTSSSGLFMKKAGRV GDSPLSGSGFYVDSEIGGAAATGLGEDLMKGCLSYEIVRLMGEGCSPQQACDQAVYAFHE KLTQRYGKAGAFSLVAMNKQGDWGVATNVEFTFTVGTDMQQPEIYIANPGKNHTTEIQPI LQEWLAAYEKRIKAPIE >gi|284795520|gb|ADDQ01000029.1| GENE 102 98248 - 99546 1388 432 aa, chain - ## HITS:1 COG:CAC2723 KEGG:ns NR:ns ## COG: CAC2723 COG0624 # Protein_GI_number: 15895980 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Clostridium acetobutylicum # 2 429 3 463 465 259 34.0 8e-69 MKIKEEIAAQKDLFYEDLNKIMAIRSVKGSPKKEAPFGEGPKRALEETLKLAERYGFQTE IVNDAVGYAQWGTAEEYLGIIGHLDVVPEGSGWSVPPFQLTKKNQRLYGRGILDNKGPIL ACLYGMKLLKELGYQPKKTIRLMFGTDEESGSGDIPLYLEKENAPVFGFTPDCKYPVVYG ERGIVNYEITTTIPDDSSEQIGQIMGDQAKDHVPDQLSVVIAGKTTAITGKRAPSNAPEL GKNAITLLAQKISEEQLVKGNLLQYFDWLTASFHEKHYGEGVALDFKDQDSGQLILTPYA LEKRGQQLVLSLAVRYPVSITENEVTTQLTKALFPESEVTVIRRLPSTLFPKDERNVQKL TKVYEQITGLDGTPVTTTGATYARFMPNIVAFGPSFPGQKGIAHNQDEYMDEKDLLLNLE IYMQAMIALTEA >gi|284795520|gb|ADDQ01000029.1| GENE 103 99543 - 100307 759 254 aa, chain - ## HITS:1 COG:BH3917 KEGG:ns NR:ns ## COG: BH3917 COG2188 # Protein_GI_number: 15616479 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 7 229 26 251 261 122 31.0 7e-28 MTENAPKFKQISAEIEKKIRDGLYVSAQKLPSEYDLAKEYNCSRLTIRKAIDDLIRKNIL VKRHGKGSYVMSQAKIQSGRAGLQGFTEAAKAYGKKSQTEVISFEEVVHPDEKIREALQV GKNEAIYELIRRRMLDGEPMTVEKIYLPQAYVQGHTKQDFEGSLFCLIEKNVEIAYSHQE IEAILVEAEISELLNVPVGQPLLQVHSITYALDATPILYDVSLYRADRYTFKNTLTRYSP SENNQVELGGSWNE Prediction of potential genes in microbial genomes Time: Sun May 15 12:39:49 2011 Seq name: gi|284795519|gb|ADDQ01000030.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont67.4, whole genome shotgun sequence Length of sequence - 56703 bp Number of predicted genes - 56, with homology - 54 Number of transcription units - 26, operones - 16 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 6/0.000 - CDS 39 - 686 167 ## PROTEIN SUPPORTED gi|46129221|ref|ZP_00155777.2| COG1194: A/G-specific DNA glycosylase 2 1 Op 2 . - CDS 701 - 1417 979 ## COG3935 Putative primosome component and related proteins 3 1 Op 3 1/0.300 - CDS 1450 - 2946 1713 ## COG2317 Zn-dependent carboxypeptidase 4 1 Op 4 . - CDS 2965 - 4128 1293 ## COG0116 Predicted N6-adenine-specific DNA methylase - Prom 4280 - 4339 7.1 + Prom 4555 - 4614 2.2 5 2 Tu 1 . + CDS 4640 - 4819 120 ## - Term 4648 - 4684 -0.3 6 3 Op 1 6/0.000 - CDS 4842 - 5252 555 ## COG3599 Cell division initiation protein - Prom 5284 - 5343 2.2 7 3 Op 2 . - CDS 5346 - 5888 595 ## COG4474 Uncharacterized protein conserved in bacteria - Prom 5980 - 6039 5.1 + Prom 5830 - 5889 3.7 8 4 Op 1 7/0.000 + CDS 5951 - 6568 460 ## COG3331 Penicillin-binding protein-related factor A, putative recombinase 9 4 Op 2 . + CDS 6610 - 8946 2301 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) + Term 8950 - 8989 11.1 - Term 8980 - 9022 9.1 10 5 Tu 1 . - CDS 9030 - 10640 1978 ## COG0504 CTP synthase (UTP-ammonia lyase) - Prom 10811 - 10870 7.6 - Term 10899 - 10936 6.4 11 6 Op 1 . - CDS 10948 - 11565 907 ## COG3343 DNA-directed RNA polymerase, delta subunit - Term 11595 - 11640 1.1 12 6 Op 2 . - CDS 11642 - 12079 659 ## COG4506 Uncharacterized protein conserved in bacteria - Prom 12319 - 12378 8.1 + Prom 12258 - 12317 5.5 13 7 Op 1 1/0.300 + CDS 12375 - 13226 761 ## COG0095 Lipoate-protein ligase A 14 7 Op 2 3/0.100 + CDS 13223 - 14593 1391 ## COG1078 HD superfamily phosphohydrolases 15 7 Op 3 . + CDS 14612 - 15424 1106 ## COG0561 Predicted hydrolases of the HAD superfamily + Term 15438 - 15497 16.3 - Term 15430 - 15478 11.0 16 8 Tu 1 . - CDS 15488 - 15934 390 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - Prom 16042 - 16101 5.7 + Prom 15987 - 16046 3.0 17 9 Tu 1 . + CDS 16077 - 16457 464 ## PROTEIN SUPPORTED gi|148984704|ref|ZP_01817972.1| 50S ribosomal protein L20 + Term 16506 - 16537 3.1 + Prom 16512 - 16571 5.4 18 10 Tu 1 . + CDS 16600 - 17322 756 ## COG2071 Predicted glutamine amidotransferases + Term 17323 - 17372 10.3 - Term 17317 - 17353 7.0 19 11 Op 1 . - CDS 17373 - 18197 1047 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase 20 11 Op 2 . - CDS 18274 - 18636 161 ## EF1137 hypothetical protein - Prom 18678 - 18737 15.8 + Prom 18618 - 18677 5.1 21 12 Tu 1 . + CDS 18806 - 19726 1076 ## COG0668 Small-conductance mechanosensitive channel + Term 19731 - 19779 6.0 - Term 19717 - 19765 6.0 22 13 Op 1 6/0.000 - CDS 19771 - 20898 1143 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase - Term 20921 - 20962 5.0 23 13 Op 2 . - CDS 20977 - 21678 991 ## COG2171 Tetrahydrodipicolinate N-succinyltransferase - Prom 21698 - 21757 3.2 24 13 Op 3 . - CDS 21759 - 22247 680 ## COG0517 FOG: CBS domain - Prom 22396 - 22455 9.6 - Term 22395 - 22446 13.1 25 14 Op 1 8/0.000 - CDS 22504 - 23214 721 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases 26 14 Op 2 9/0.000 - CDS 23204 - 24064 614 ## COG3623 Putative L-xylulose-5-phosphate 3-epimerase 27 14 Op 3 . - CDS 24069 - 24707 745 ## COG0269 3-hexulose-6-phosphate synthase and related proteins 28 14 Op 4 . - CDS 24721 - 25020 406 ## EF1128 phosphotransferase enzyme II, B compnent SgaB 29 14 Op 5 2/0.100 - CDS 25035 - 26522 1526 ## COG3037 Uncharacterized protein conserved in bacteria 30 14 Op 6 . - CDS 26535 - 26993 526 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 31 14 Op 7 . - CDS 27011 - 28078 1207 ## COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold - Prom 28118 - 28177 4.6 + Prom 28048 - 28107 3.8 32 15 Op 1 . + CDS 28167 - 28256 56 ## 33 15 Op 2 . + CDS 28272 - 29036 581 ## COG1349 Transcriptional regulators of sugar metabolism + Term 29185 - 29222 -0.7 - Term 29029 - 29084 18.1 34 16 Op 1 . - CDS 29130 - 29642 530 ## COG0622 Predicted phosphoesterase 35 16 Op 2 2/0.100 - CDS 29655 - 31010 478 ## PROTEIN SUPPORTED gi|165937309|ref|ZP_02225873.1| non-canonical purine NTP pyrophosphatase RdgB 36 16 Op 3 . - CDS 31003 - 31830 773 ## COG0796 Glutamate racemase - Prom 31853 - 31912 4.2 + Prom 31927 - 31986 8.9 37 17 Op 1 16/0.000 + CDS 32095 - 32826 631 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 38 17 Op 2 31/0.000 + CDS 32861 - 33688 1113 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 39 17 Op 3 17/0.000 + CDS 33734 - 34447 749 ## COG0765 ABC-type amino acid transport system, permease component 40 17 Op 4 . + CDS 34459 - 35124 654 ## COG0765 ABC-type amino acid transport system, permease component + Term 35179 - 35232 7.5 - Term 35261 - 35306 14.1 41 18 Op 1 40/0.000 - CDS 35322 - 37745 3195 ## COG0072 Phenylalanyl-tRNA synthetase beta subunit 42 18 Op 2 1/0.300 - CDS 37753 - 38799 1436 ## COG0016 Phenylalanyl-tRNA synthetase alpha subunit - Prom 38819 - 38878 7.9 - Term 38826 - 38873 12.2 43 19 Op 1 . - CDS 39118 - 39462 434 ## COG1733 Predicted transcriptional regulators 44 19 Op 2 8/0.000 - CDS 39532 - 43326 3698 ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 45 19 Op 3 1/0.300 - CDS 43319 - 46909 3605 ## COG3857 ATP-dependent nuclease, subunit B - Prom 46935 - 46994 5.2 - Term 46944 - 46999 13.5 46 20 Tu 1 . - CDS 47020 - 47568 711 ## COG0681 Signal peptidase I - Prom 47657 - 47716 6.2 - Term 47727 - 47781 10.7 47 21 Op 1 13/0.000 - CDS 47789 - 48508 973 ## COG1556 Uncharacterized conserved protein 48 21 Op 2 17/0.000 - CDS 48501 - 49973 1301 ## COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain 49 21 Op 3 . - CDS 49986 - 50747 826 ## COG0247 Fe-S oxidoreductase - Prom 50907 - 50966 9.9 + Prom 50843 - 50902 10.1 50 22 Op 1 . + CDS 51099 - 51404 192 ## EF1105 hypothetical protein + Term 51408 - 51450 11.2 + Prom 51491 - 51550 9.5 51 22 Op 2 . + CDS 51585 - 51770 227 ## EF1104 hypothetical protein + Term 51771 - 51829 14.3 + Prom 51775 - 51834 12.0 52 23 Tu 1 . + CDS 51941 - 53293 1321 ## COG1113 Gamma-aminobutyrate permease and related permeases + Term 53301 - 53354 15.5 + Prom 53321 - 53380 6.3 53 24 Tu 1 . + CDS 53403 - 53804 515 ## EF1102 hypothetical protein + Term 53905 - 53941 -1.0 - Term 53699 - 53740 -0.8 54 25 Op 1 . - CDS 53801 - 54535 470 ## COG0500 SAM-dependent methyltransferases 55 25 Op 2 . - CDS 54605 - 56200 1416 ## COG1132 ABC-type multidrug transport system, ATPase and permease components - Prom 56231 - 56290 1.6 - Term 56272 - 56321 11.6 56 26 Tu 1 . - CDS 56325 - 56702 218 ## EF1099 collagen adhesin protein Predicted protein(s) >gi|284795519|gb|ADDQ01000030.1| GENE 1 39 - 686 167 215 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|46129221|ref|ZP_00155777.2| COG1194: A/G-specific DNA glycosylase [Haemophilus influenzae R2846] # 26 205 31 213 378 68 26 6e-11 MLSKEKTMEAIEIMYEMFPNAECELKHKNPFELLIAVILSAQATDVSVNKATPGLFAAFP TPEALAAAPVEEIIAKIKTIGLYRNKAKNIKACAQQLLERFNGEVPQTRDELVSLPGVGR KTANVVMGDAFGEPAFAVDTHVERVSKRLRICKLNANVTEVEQTLMRKVPKELWVKTHHT MIFFGRYHCLARAPKCEACPLLYMCQEGKERMKGK >gi|284795519|gb|ADDQ01000030.1| GENE 2 701 - 1417 979 238 aa, chain - ## HITS:1 COG:BS_dnaD KEGG:ns NR:ns ## COG: BS_dnaD COG3935 # Protein_GI_number: 16079292 # Func_class: L Replication, recombination and repair # Function: Putative primosome component and related proteins # Organism: Bacillus subtilis # 9 232 11 230 232 124 35.0 2e-28 MLSIREYLEAGETTISNLLFDHYQKIGLKDDEFLFLLQLFRSQNAGDLFPDLMAIAETMG KTPDTIYKLLNQLVSRGFIRIETQQNQKGQMMDTYDLLPVFQKIQLFLQTSKEKQVVANH EDEIKQLYQGFEKEFGRPLSPIELEMIGQWLNTDHYSPELIRLALREAVLNQAYSLKYID RILLAWERKNITTKEQVAADQKKRKDSMIQNEIEQQGQTQESLPKVTLHNWLNPEDSE >gi|284795519|gb|ADDQ01000030.1| GENE 3 1450 - 2946 1713 498 aa, chain - ## HITS:1 COG:lin1999 KEGG:ns NR:ns ## COG: lin1999 COG2317 # Protein_GI_number: 16801065 # Func_class: E Amino acid transport and metabolism # Function: Zn-dependent carboxypeptidase # Organism: Listeria innocua # 3 496 6 499 502 494 48.0 1e-139 MKEAVFLQEVKEIQLLKNALTLLDWDSSTGMPEKSSPFRGEVEGYLTGLYFERSIGPVIQ EALAYFETRPEELSELGKLVFEKVKEEYALNKNVPAERMQEYVKVLNQAHTDWLKARAAQ DFGLLEETLTKVVAFQKEFIPYWQKEEKTPYDVLLNQFEPGMTVEKLDQVFDQVKQGIQE IRTVLEEKGTPPRTDFLSRRMTKEQQRRFVIGVVEQLGYDFSKGRLDDTVHPFMTALNRN DARITTRWEENNFSMATFGVIHEAGHGMYEQNFDPKFDFTPLSEGASMGIHESQSLFNEI IIGSNRAFWQKQYPFFQECAEGTFDDIAFEDFYASLKETKASLIRIDSDSLTYPLHIIIR YEIEKMLFNGSLEVADLPKVWNEKYQEYLGVSPENDLEGALQDVHWSGGSFGYFPSYALG YMYAAQLFHAMKQELSVDEILASEDYSDIRKWLTQHIHQYGASRKPNQLIYDATGEELNP SYLIDYMKAIYFDVYHVQ >gi|284795519|gb|ADDQ01000030.1| GENE 4 2965 - 4128 1293 387 aa, chain - ## HITS:1 COG:lin2000 KEGG:ns NR:ns ## COG: lin2000 COG0116 # Protein_GI_number: 16801066 # Func_class: L Replication, recombination and repair # Function: Predicted N6-adenine-specific DNA methylase # Organism: Listeria innocua # 5 387 2 382 382 533 68.0 1e-151 MTKEKTFKLVATAASGLEALVGKELRDLGIPCEVENGRAVFEGTVETIATANLWLRTADR IKIVVGEFNAYSFDELFEKVKALPWEDYLPLDAEFPVAGKSIKSKLYSVPDCQAITKKAI VNRLREVYHRPATVPLTETGALFKLEVALLKDKVTLTLDTTGPSLFKRGYRIEKGGAPLK ENMAAALVMLTNWRKDRPFYDPVCGSGTICIEAALIGHNIAPGFNRSFTCETWDWVDPAI FEKVRNEAEAKADYDVELDICGSDVDGRMIEVARANAEEVGLGDSITFKQLALKDFTTEK EYGVMVANPPYGERLGEEESVRRLYKEMGHVFRPLTTWSKYILTSDLAFEEYYGAKATKK RKLYNGALRTDLFQYWGTRPPRKPRED >gi|284795519|gb|ADDQ01000030.1| GENE 5 4640 - 4819 120 59 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MISLSTNTTSISACASMDFPQLAKANRDHPKITNLFKRTAKIYTLQQVSAILTNAFCSS >gi|284795519|gb|ADDQ01000030.1| GENE 6 4842 - 5252 555 136 aa, chain - ## HITS:1 COG:lin2002 KEGG:ns NR:ns ## COG: lin2002 COG3599 # Protein_GI_number: 16801068 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division initiation protein # Organism: Listeria innocua # 9 106 13 111 113 89 54.0 2e-18 MANLVYSPKDILQKEFKTKMMNGYDPIEVDEFLDNVIKDYEAYNKELLSLQEENSRLMAK LDQLSKAQPTPRVAQEVPKSAAVTNFDILKRLSNLEREVFGKKLDETPSTPVTPSAPSMT AEPANHDVDNAQTRQF >gi|284795519|gb|ADDQ01000030.1| GENE 7 5346 - 5888 595 180 aa, chain - ## HITS:1 COG:BH1768 KEGG:ns NR:ns ## COG: BH1768 COG4474 # Protein_GI_number: 15614331 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 4 175 1 172 189 153 43.0 2e-37 MEMIKTLYVTGYRSFELGIFQGKDPKITVIKNVLKKELASYIETGVEWILISGNLGVELW TAEVVGELKTEYPEVQLGLLYPFKDFGNNWNEQNRELLTKAESLADYINSVSHQPYQSPA QLKMHTKFLLEHSGGSLLIYDKEYPGKTEYFLKDAQHFSEREPYDIRLITMDDLQNSVID >gi|284795519|gb|ADDQ01000030.1| GENE 8 5951 - 6568 460 205 aa, chain + ## HITS:1 COG:SPy1648 KEGG:ns NR:ns ## COG: SPy1648 COG3331 # Protein_GI_number: 15675520 # Func_class: R General function prediction only # Function: Penicillin-binding protein-related factor A, putative recombinase # Organism: Streptococcus pyogenes M1 GAS # 9 200 2 191 199 210 55.0 2e-54 MTFHYPNGIPYNHHEAQSPKKQVKKKRPVEFGNRGMDFEEAINQSNQYYLLNKQAVVHKK PTPVQIVKVDYPKRSAAVIKEAYFRQASTTDYNGVYQGRYIDFEAKETKNTTSFPFKNFH QHQIDHMEQCIAQQGICFVLLWFSSLKRCFFFSGENLITHWKNQAVTGKKSMPLALIEKE GIELSFGIAPRIPYLDAVEQYIQTH >gi|284795519|gb|ADDQ01000030.1| GENE 9 6610 - 8946 2301 778 aa, chain + ## HITS:1 COG:SP0369 KEGG:ns NR:ns ## COG: SP0369 COG0744 # Protein_GI_number: 15900292 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Streptococcus pneumoniae TIGR4 # 41 697 17 662 719 624 53.0 1e-178 MPTANSGSRAARHASNTSSKSSYKKKTQPPKKKKRLVLKIFLGLLIAGMVAFLAGVGLFW FYARQAPKLEDDKLNATVSSKLYDINNEIFEDLGAEKRELIQPNDVPQLLKDAIVSVEDR RFYKHIGVDPIRIIGSALSNVKNGGLQGGSTLTQQLIKLSYFSTKESDQTLKRKAQEAWM AVRLEREKSKEEILTYYINKVYMANGFYGMETAAENYYGKHLSELDLPQTALLAGMPQAP NSYDPYTKPDTAKERRDVVLYTMYDNKKISKAEYEKAKATPIDEGLVPLKASDDNRKVVD NYVKEVINEVKAKTGKNVYTDGLDIYTNLDMNAQKQLYDIVNSDQYVAFPDDKMQVASTV IDVASGQVRAQIGGRHIPDDVQLGNNLAVNTQRDVGSTVKPIMDYGPAIENLNYSTGRLM VDKPTKYPGTDIDVFNSDLTYQGVITMRRAIMGSRNTTAVQTFDEVGKENIMPFIKGLGI DYKNLEASNAISSNTSDVDGDKYGISSLKLAAAYAAFANNGIYNKPYYVNKVVFNDGTSV DYQPDGKRAMKDSTAYMMTDMLKDVLNGGTGFNGAIPGLIQAAKTGTSNYTDEDLARMGT TEKGIAPDSTFVGYTTHYAVSVWTGYNDRNTPIYQEYYGIASDVYREIMSYLSQNVSNDD WVQPDSVVRVGNELYVKDAYEVPNVQVLPSTTSSAPQPESSSTVESSSTKEAESSSSSSS ESAPSSSEAPPSTEQPASSSSAEQPATSEQPPEPSSSSSQEPPQPPESSSKPDENKAA >gi|284795519|gb|ADDQ01000030.1| GENE 10 9030 - 10640 1978 536 aa, chain - ## HITS:1 COG:SP0494 KEGG:ns NR:ns ## COG: SP0494 COG0504 # Protein_GI_number: 15900408 # Func_class: F Nucleotide transport and metabolism # Function: CTP synthase (UTP-ammonia lyase) # Organism: Streptococcus pneumoniae TIGR4 # 2 532 3 533 535 878 79.0 0 MTKYIFVTGGVVSSIGKGIVAASLGRLLKNRGLKVTIQKFDPYINVDPGTMSPYQHGEVF VTDDGAETDLDLGHYERFIDINLNKYSNVTTGKIYSEVLRKERKGEYLGATVQVIPHITN EIKEKIMRAAKMTDADVIITEVGGTVGDIESLPFLEALRQMKADMGSDNVMYIHTTLIPY LKAAGEMKTKPTQHSVKELRSLGIQPNILVVRTELPVSQNTKNKLAQFCDVNPEAVIESR DVETLYSIPLALQAQNMDQIVCDHLKLDAPAADMTEWRALEEKVLNLKKKTKIALVGKYV ELPDAYISVVEALKHAGFDFDSDIEIDWVDSQELTAENVAERIGSADGILVPGGFGDRGI EGKIEAIRFARENDVPFLGICLGMQMACVEFGRNVVGLEDAGSAETNPDVTNNIIDLMAD QENIENLGGTLRLGLYPCKLKKGTKTAAAYGNEDVVQERHRHRYEFNNKYRQLFEENGLV FSGVSPDNRLVEIVEIPEKQFFVACQFHPELISRPNRPQRLIKGFVGAALANKESK >gi|284795519|gb|ADDQ01000030.1| GENE 11 10948 - 11565 907 205 aa, chain - ## HITS:1 COG:SPy1895 KEGG:ns NR:ns ## COG: SPy1895 COG3343 # Protein_GI_number: 15675708 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, delta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 171 1 170 191 116 55.0 3e-26 MEINVFEGLNKKELSMIEVAHAILEQHADVMDFSDLVNQIQNYLGKSDSEIRDQLAQFYT DLNIDGSFISLGDNRWGLRSWYPIDSIDEEVTHGLEEDEEDAPRRRKRKKVNAFITNPND EDVIDYNDDDPEDAELTNDDEEDILYDDEEDEDEEIKAYNSDLQEIGADSDDDEEDIPQI EEDLTIIDDDDVEDEDDFDDEYSEE >gi|284795519|gb|ADDQ01000030.1| GENE 12 11642 - 12079 659 145 aa, chain - ## HITS:1 COG:SA0563 KEGG:ns NR:ns ## COG: SA0563 COG4506 # Protein_GI_number: 15926284 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 9 143 9 137 142 58 33.0 4e-09 MDLSTGVPVSIQLKTIVQQGNEQKDFFFDLEGQLVKMGDTLYIRYKEELLEDTEPTPVTI KIEPDGHVQLIRAGELRMRLRFGYQEKLDTSYRTPYGLLQISTFTHNLRVSLKDQPMSGK ILVDYDLYSQTERIGEYHLELEFTA >gi|284795519|gb|ADDQ01000030.1| GENE 13 12375 - 13226 761 283 aa, chain + ## HITS:1 COG:SPy1220 KEGG:ns NR:ns ## COG: SPy1220 COG0095 # Protein_GI_number: 15675184 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Streptococcus pyogenes M1 GAS # 28 240 33 248 283 194 46.0 2e-49 MSTTFPLHTESFMLLDSGCLTNSDYFLPFALTDVLTTFSGMQHQPIIHFWQLDQAMILGM KDTRVPHLKEGIASLQENDYSVVVRNAGGLGVIADSGILNVSLILPNNSEHKLSIDAAYE LMWAWLRQSFPEKEIDAFEITTSYCPGTYDLSIGGQKFAGIAQRRVKDGIAVMIYISVNG NQLARGEVVRDFYLAGLQEQFGENGYPPVDPAVMANLETLIETPLTIDAVKTRLIEALPQ QFEKSIDPNLTEPIITSEWFQTNLTVQLEKMAQRNALIKGEIV >gi|284795519|gb|ADDQ01000030.1| GENE 14 13223 - 14593 1391 456 aa, chain + ## HITS:1 COG:SP1290 KEGG:ns NR:ns ## COG: SP1290 COG1078 # Protein_GI_number: 15901150 # Func_class: R General function prediction only # Function: HD superfamily phosphohydrolases # Organism: Streptococcus pneumoniae TIGR4 # 13 449 3 426 434 538 62.0 1e-152 MTIPYKEQRLPIEKVFRDPVHNYIHVQHQVILDLINSAEVQRLRRIKQLGTSSFTFHGAE HSRFSHSLGVYEITRRICEIFQRNYSVERLGENGWNDDERLITLCAALLHDVGHGPYSHT FEHIFDTNHEAITVQIITSPETEVYQILNRVSADFPEKVASVITKQYPNPQVVQMISSQI DADRMDYLLRDAYFTGTEYGTFDLTRILRVIRPYKGGIAFAMNGMHAVEDYIVSRYQMYV QVYFHPVSRGMEVILDHLLHRAKELFENPEFDYDLQASLLVPFFKGDFTLQEYLKLDDGV LSTYFTQWMDVPDSILGDLAKRFLMRKPLKSATFTNEKESAATIAYLRELIEKVGFNPKY YTAINSSYDLPYDFYRPNKDRHRTQIELMQKDGSLVELATVSPLVAALAGQSQGDERFYF PKEMLDQGNKKHYDLFDETYREFSSYIHNGALVLKK >gi|284795519|gb|ADDQ01000030.1| GENE 15 14612 - 15424 1106 270 aa, chain + ## HITS:1 COG:SP1291 KEGG:ns NR:ns ## COG: SP1291 COG0561 # Protein_GI_number: 15901151 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Streptococcus pneumoniae TIGR4 # 1 269 1 268 268 277 53.0 1e-74 MSIKLVAIDIDGTLLNSQHKITPRVKEALQKANEQGVRIVLCTGRPLPGVKEQLDELALY GENDFVITYNGSLVQATKDNAIISRYTLSYEDFLEIEMYSRKVGAHLHTIDDSAIYTANR NIGKYTIHEASLVNMPLKYRTVDEMTPEMNIIKMMMIDEPEVLDPAIAKLPLHFTEKYTT VKSTPFYYEIMNKNASKGNALAKLADHLGLNKDEVMAIGDNENDLSMIDYAGIGVAMGNA TENVKTIADVHTTSNDEDGVAQIIEKMVLI >gi|284795519|gb|ADDQ01000030.1| GENE 16 15488 - 15934 390 148 aa, chain - ## HITS:1 COG:L99869 KEGG:ns NR:ns ## COG: L99869 COG0494 # Protein_GI_number: 15674214 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Lactococcus lactis # 4 144 5 144 146 160 56.0 7e-40 MKTPTFGKREETLTYQTRYAAYIIVSKPENNTMVLVQAPNGAYFLPGGEIEGTETKEEAI HREVLEELGISVEIGCYLGEADEYFYSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLH WVAPEEAVRLLKRGSHRWAVEKWLAAAS >gi|284795519|gb|ADDQ01000030.1| GENE 17 16077 - 16457 464 126 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148984704|ref|ZP_01817972.1| 50S ribosomal protein L20 [Streptococcus pneumoniae SP3-BS71] # 1 126 1 126 126 183 65 2e-45 LTMKMAHTCVRVKDLEASLDFYQKAFNFEESRRRDFPENKFTLVYLTLPGDDYELELTYN YDHEAYDLGNGYGHIAISTDDLEGLHEKHQAAGFTVTDLKGLPGTAPSYYFVVDPDGYKI EVIRER >gi|284795519|gb|ADDQ01000030.1| GENE 18 16600 - 17322 756 240 aa, chain + ## HITS:1 COG:SP1089 KEGG:ns NR:ns ## COG: SP1089 COG2071 # Protein_GI_number: 15900957 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferases # Organism: Streptococcus pneumoniae TIGR4 # 1 240 1 229 229 209 46.0 3e-54 MTKKIIGIAGNQLLQAAEVFHGNQVTYTPHGFVSAVQAAGGVPLVLPIGPKELAATYIQQ IDKLLLAGGQDVAPEFYGQEPHIKLEETNRDRDEFELALIEEALKQNKPIFAVCRGMQLV NVALGGTLYQDLSMYPQWSVKHGQQPTQPIFATHRIDVEPDSQLSNIYGTTGQVNSYHHQ ALHTLGKDLRVTAWSSDGLAEAVESTNEQQPLLAVQWHPELMYARDAKSQALFNYFVQKL >gi|284795519|gb|ADDQ01000030.1| GENE 19 17373 - 18197 1047 274 aa, chain - ## HITS:1 COG:lin0819 KEGG:ns NR:ns ## COG: lin0819 COG0656 # Protein_GI_number: 16799893 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Listeria innocua # 1 274 1 274 274 372 63.0 1e-103 MTLDKTKKLANGNEMPRLGLGVWRVEDGSEATNSVKWALEAGYRLIDTAAVYKNEAGVGE GIRQSGIPREEIFVTTKLWNEDQGYENAIKAFDKSLEKLGLDYVDLYLIHWPVAGKYKES WKALEEIYASGRAKAIGVSNFHQHHLEDLLTEANVVPMVDQIELHPTLTQEPLRKYLAEN KIAVEAWSPLGQGNLLSEPVLVKIGEKYGKSAAQVIIRWHLQNDIIVIPKSVHEKRIQEN FAVFDFELTPEEITAINQLNKDHRFGADPDNFDF >gi|284795519|gb|ADDQ01000030.1| GENE 20 18274 - 18636 161 120 aa, chain - ## HITS:1 COG:no KEGG:EF1137 NR:ns ## KEGG: EF1137 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 30 120 1 91 91 160 98.0 1e-38 MKVSIEWAKNDLLSKLPVTIFIDERCATRLTADKRRTFIFHNPVALRLGSRFFSSQIIEI AESCTLKVSFNWSCVYLFCIWLLAVKLWIGSVSGRTIVVVALIGVLTYWRRYLLKIKKMT >gi|284795519|gb|ADDQ01000030.1| GENE 21 18806 - 19726 1076 306 aa, chain + ## HITS:1 COG:SPy1897 KEGG:ns NR:ns ## COG: SPy1897 COG0668 # Protein_GI_number: 15675710 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Streptococcus pyogenes M1 GAS # 45 299 19 270 281 198 42.0 9e-51 MLILGLASTETVDSSAPDLAEATVKKVSALQRFWNNINWDAIVATLIEKSLSILFLIFLF FIIQRIGKYLIDRTYANYSKKQHFSESRLKTLHTLIINAFQYTLFFFFIYSLLTIVGVPV GSLLAGAGIAGVAIGLGAQGFMNDLITGFFIILEQQMDVGDYIRLLALNIEGTVTSVGLR TTQIKAVDGTVHFIPNRNITTISNLSRANMQVLIDVRINPEEGYEKICEVITEVNETLKE KYIESIQTGPDIFGMVDLGNGNFAVRTTMYVLNGKQFAVKEEFLAQYIKALTEAGFTIPN TPIIAK >gi|284795519|gb|ADDQ01000030.1| GENE 22 19771 - 20898 1143 375 aa, chain - ## HITS:1 COG:SP2096 KEGG:ns NR:ns ## COG: SP2096 COG1473 # Protein_GI_number: 15901911 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Streptococcus pneumoniae TIGR4 # 5 371 3 371 376 456 59.0 1e-128 MEQEELIAIRRQLHQIPEIGLEEKETQAFLLNEIDKMKQPYLQVRTWQTGILVFIEGKNP QKTIGWRADIDGLPIQEEVVSAFQSKRPGFMHACGHDFHMTIGLGVLKELSQQQPDNNFL FLFQPAEENEAGGMLMYEDHAFGEWLPDEFYALHVNPDLPVGTISTRVGTLFAATCEVNI TLKGKGGHAAFPHQANDMVLAATNLIQQAQTIVSRNVDPVVGAVVTFGTFHAGTACNVIA EEATLSGTIRTLTAETNEQTQRRIREISEGIAQSFQCEVTVHLDQKGYLPVVNEPACTTN LIEYMSKQATVQFQQASVAMTGEDFGYLLSKVPGTMFWLGVASPYSLHSAKFEPNEEALL FGVEAVSGFLKSLDN >gi|284795519|gb|ADDQ01000030.1| GENE 23 20977 - 21678 991 233 aa, chain - ## HITS:1 COG:BS_ykuQ KEGG:ns NR:ns ## COG: BS_ykuQ COG2171 # Protein_GI_number: 16078482 # Func_class: E Amino acid transport and metabolism # Function: Tetrahydrodipicolinate N-succinyltransferase # Organism: Bacillus subtilis # 1 233 4 236 236 287 69.0 1e-77 MDAYEIIQYIGDAKKQTPVKVTLKGQLKEVTFPETIKVFNNCKTGTLFGDWADVKPFLEA NKEKIEDYVVENDARNSAIPFLDLKDINARIEPGALIREKVEIGDQAVIMMGAILNIGAV VGAGTMIDMGAVLGGRATVGKHCHIGAGTVLAGVIEPPSAAPVVIENEVVIGANAVVLEG VRVGEGAVVAAGAVVVEDVPAHTVVAGVPAKVIKQIDDKTKSKTEILEELRKL >gi|284795519|gb|ADDQ01000030.1| GENE 24 21759 - 22247 680 162 aa, chain - ## HITS:1 COG:L110441 KEGG:ns NR:ns ## COG: L110441 COG0517 # Protein_GI_number: 15673261 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Lactococcus lactis # 1 149 1 147 153 108 38.0 5e-24 MIGTAVKELLLEKQETFLVPAENVANVMCLNPLSHAALVLSQVRYSKIPVLDKGDRFVGL IGLTDVVDKMFDLTSVDFEKLNEFTVADVMEVNVPVIGESWDLEEVLHLLVDASFLPVVD DNQRFKGIITRKEILKAVNHMAHELEKHHLVLPKSEEEMKVI >gi|284795519|gb|ADDQ01000030.1| GENE 25 22504 - 23214 721 236 aa, chain - ## HITS:1 COG:SPy0179 KEGG:ns NR:ns ## COG: SPy0179 COG0235 # Protein_GI_number: 15674384 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Streptococcus pyogenes M1 GAS # 7 236 5 233 234 297 60.0 1e-80 MNNKAIIQAMKQRVYEANLALPKLGLVKLTWGNVSEINRSLGIIVIKPSGVKYQEMSKEQ MVVTDLNGQLLETNALKPSSDLPTHLYLYQKMPEIGAIAHTHSLNSVTWAQAGRALPPYG TTHADAFYGAVPCTRALSESEIKENYEEETGKVIVETFHEQELDPLAVPGVLVYGHGPFT WGMTPEKAVENSLILDEICSMARLTETINPAVEPIDHFLLDKHYLRKHGISAYYGQ >gi|284795519|gb|ADDQ01000030.1| GENE 26 23204 - 24064 614 286 aa, chain - ## HITS:1 COG:sgbU KEGG:ns NR:ns ## COG: sgbU COG3623 # Protein_GI_number: 16131453 # Func_class: G Carbohydrate transport and metabolism # Function: Putative L-xylulose-5-phosphate 3-epimerase # Organism: Escherichia coli K12 # 3 283 16 295 297 298 53.0 1e-80 MARIGLYEKALPQNLTWAERLTWAKKLGFDFLEMSIDESDERLARLAWTPSQLQELSQLM VKEDFFIHSLCLSGHRRFPLGSLNKETREKGRKILSQAIHLAHQLNIRVIQIAGYDVFYE EKTAETREFFLQGLKKGVEEAAQYGVILAVEIMDDPFMNSIQKFLEIKEQIPSPFLHVYP DLGNLSAWPENNPAVELEKGIAEIAAIHLKDTFAVTDTFEGKFREVTFGEGCVDFTGLLK TLKRLNYSGPFLIEMWNETDLNFQEKIQAAQQYLYPKLAEVGYYEQ >gi|284795519|gb|ADDQ01000030.1| GENE 27 24069 - 24707 745 212 aa, chain - ## HITS:1 COG:SP2035 KEGG:ns NR:ns ## COG: SP2035 COG0269 # Protein_GI_number: 15901856 # Func_class: G Carbohydrate transport and metabolism # Function: 3-hexulose-6-phosphate synthase and related proteins # Organism: Streptococcus pneumoniae TIGR4 # 4 211 6 220 221 255 60.0 4e-68 MKRPNLQIALDHNSLEDALADCMKVGEIVDIIEVGTILCLQEGQKAIRCLKRMFPNKTIV ADTKCADAGGTVARNVAQAGADFMTVICCATLPTMAAAQKEVRELQVELYGNWTMQQARQ WRELGINQVIYHQSRDALLAGGSWGEKDLNKVQELIDLGFEVSVTGGLTVETLELFQTMA VATFIAGRGITESKNPEQAAKDFQKKIDQIWK >gi|284795519|gb|ADDQ01000030.1| GENE 28 24721 - 25020 406 99 aa, chain - ## HITS:1 COG:no KEGG:EF1128 NR:ns ## KEGG: EF1128 # Name: sgaB # Def: phosphotransferase enzyme II, B compnent SgaB # Organism: E.faecalis # Pathway: Ascorbate and aldarate metabolism [PATH:efa00053]; Phosphotransferase system (PTS) [PATH:efa02060] # 1 99 1 99 99 175 100.0 5e-43 MRILVSCANGSGTSLMMMRSVEKAMKELGVPITKIHHCAISEGKSSASQYDVVFTPVNFL QMFQQAEKRGVTVIGIKNVMSAKEIQEKYMASDRYQKSE >gi|284795519|gb|ADDQ01000030.1| GENE 29 25035 - 26522 1526 495 aa, chain - ## HITS:1 COG:SP2038 KEGG:ns NR:ns ## COG: SP2038 COG3037 # Protein_GI_number: 15901859 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 11 473 10 469 485 394 47.0 1e-109 MGEFLLNSWTYFATNVLTQPAYLIGFIVLLGYLLLRRPFYECLAGFLKATVGYFILSVGS GGLVNNFRPILVGLKERFNLQAMVTDPYFGQNAVDAGLMKTFGRTFGDVMILLLIAFIMN ILLVRFQKYTKLRAVFTTGNVQIQQAATAFWILLFCFPNLGRIEVLIFMGLILGCYWAVA SNLTVGITQELTEGAGFAVAHQQMFGIFIFAKLAEWLKKRDQKKHRSEKVDKKLEDIELP GFLSIFNENMVATSILMLFFFGIILLVLGQDYLIQAKFMQEGQSFFFYIMTTSLNFAVYL AILQLGVRTFVDELTQSFQGISNTILPGAVPGIDVAATFGFGSPNAVTIGFLFGALGQFL MIGLLILLKSPTIVIAGFIPLFFDNAVIAVYANNRGGVKAACLFPFLSGLIQVGGSALFA TWIGLSQYGGYLGMFDWATAWPLFTIIMKVLGYVGVAVVVIGLLIIPQLQYRKNPEGYFM IVNDYEQYAKKFQEN >gi|284795519|gb|ADDQ01000030.1| GENE 30 26535 - 26993 526 152 aa, chain - ## HITS:1 COG:lin2929 KEGG:ns NR:ns ## COG: lin2929 COG1762 # Protein_GI_number: 16801988 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Listeria innocua # 21 149 20 146 148 80 37.0 1e-15 MLTYFWEQELIHYSDKEPVSWQEAIQESCLILLQKHIIDQSYVDEIIQCVETFGPYIIIA PEVAMPHSSEESAGVFGTAISFTKFKQSVTFTGDQEAKTATLFFTLAAQNPAEHLENIQQ LMDLLMTDGVIADLLETNTLMDFKEVMEKYQL >gi|284795519|gb|ADDQ01000030.1| GENE 31 27011 - 28078 1207 355 aa, chain - ## HITS:1 COG:ECs5168 KEGG:ns NR:ns ## COG: ECs5168 COG2220 # Protein_GI_number: 15834422 # Func_class: R General function prediction only # Function: Predicted Zn-dependent hydrolases of the beta-lactamase fold # Organism: Escherichia coli O157:H7 # 1 355 3 356 356 482 62.0 1e-136 MSKSIHEITKESWLKATFPEWGTYLNEEINQTTVLQGTVALWWLGCTGIWLKTHENTNIL CDLWCGTGKQTHGNGLMKNGHQMMRMSGCQKMQPNLRTQPFVIDPFEIKEVDALVVTHIH SDHLDIHTAAAVHQNCPKALFIGPKEVVKTWQRWGVPAEKTRVIEPGQEIKVNDVNVVAL EAFDRTALITSDDPENTFKGKMPQDMNELAVNYLFETSGGTVYHAGDSHYSNLFAKHGNQ YAIDVCLGAYGENPRGITDKITSVDMLRMAESLNAKVVIPVHYDIWSNFMADPKEIMEIW KFKKDRLHYQFKPYIWQVGGKFVYPDDKDNLEFNFDRGFNDVFVKENDTPFPSFL >gi|284795519|gb|ADDQ01000030.1| GENE 32 28167 - 28256 56 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFALLMILLRVLFSYELYYFMGDRVQKNN >gi|284795519|gb|ADDQ01000030.1| GENE 33 28272 - 29036 581 254 aa, chain + ## HITS:1 COG:BS_glcR KEGG:ns NR:ns ## COG: BS_glcR COG1349 # Protein_GI_number: 16080683 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Bacillus subtilis # 9 251 4 249 258 103 32.0 4e-22 MKSSLETIEKRQQNILALLQKNKQMTTYKLADALNVSLSTIRRDLNVLETKNDIIRKYGY CIYNDQNQKDFDQSGPELLKQAIARVACSYLSDYDTVFINSSSTALNILHYLKADHLTIV TNNLKIATKPHVSQYNYILTGGELRFPKEVLVGDIAINTITATHADVCVIGCSGVSLEHG VTTKIFNEAKINELMIKQTTKVKILVADHRKIGLTSKFKIADITAFDCLITDKHCSSTLI TELRKTGLKVIQVD >gi|284795519|gb|ADDQ01000030.1| GENE 34 29130 - 29642 530 170 aa, chain - ## HITS:1 COG:lin1203 KEGG:ns NR:ns ## COG: lin1203 COG0622 # Protein_GI_number: 16800272 # Func_class: R General function prediction only # Function: Predicted phosphoesterase # Organism: Listeria innocua # 1 168 1 168 174 158 47.0 5e-39 MKILVVSDNHGDRDCLVDLVNHYEGQVDALFHCGDSELEPTDELWQKLIVVQGNCDFYDE FPKTVTKKVGDQVIYMTHGHLANVRMGLTTLALQAEEAGATIALFGHTHVLGAERHNNIL FVNPGSIRLPRGPVQEKTYAIIESTPEQYLVQYYNKEHQLLERLKATFTK >gi|284795519|gb|ADDQ01000030.1| GENE 35 29655 - 31010 478 451 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|165937309|ref|ZP_02225873.1| non-canonical purine NTP pyrophosphatase RdgB [Yersinia pestis biovar Orientalis str. IP275] # 231 438 5 213 223 188 49 5e-47 MIRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWV AAEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVI QADGGTRTASITGAFVALRLAVNHLLMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDYA EDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEALYA LASEEVPSQDSEEKVIVIATRNPGKAKEFSSIFGEKGYTVKTLLDYPNLPDVEETGRTFE ENARLKAETIAEILQKPVLADDSGLIVDALGGMPGIYSARFAGEPTNDASNNAKLLHELT GVPKEKRQARFHCTLVFAEPKKESLVVEAEWPGEVGTIPRGEGGFGYDSLFYVPELGKTA AELSGEEKNKVSHRGQAVAKLKEQWEEWLKK >gi|284795519|gb|ADDQ01000030.1| GENE 36 31003 - 31830 773 275 aa, chain - ## HITS:1 COG:lin1200 KEGG:ns NR:ns ## COG: lin1200 COG0796 # Protein_GI_number: 16800269 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glutamate racemase # Organism: Listeria innocua # 6 270 2 265 266 326 58.0 4e-89 MRMSNQEAIGLIDSGVGGLTVLKEALKQLPNERLIYLGDTARCPYGPRPAEQVVQFTWEM ADFLLKKRIKMLVIACNTATAVALEEIKAALPIPVVGVILPGARAAVKVTKNNKIGVIGT LGTIKSASYEIAIKSKAPTIEVTSLACPKFVPIVESNQYRSSVAKKIVAETLQALQLKGL DTLILGCTHYPLLRPVIQNVMGSHVTLIDSGAETVGEVSMLLDYFDIAHTPEAPTQPHEF YTTGSAKMFEEIASSWLGIENLKAQQIHLGGNEND >gi|284795519|gb|ADDQ01000030.1| GENE 37 32095 - 32826 631 243 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 239 1 242 245 247 51 9e-65 MISLEHVNKYFGEHHVLKDITLNVEQGEKIVIIGPSGSGKSTLIRCMNQLEKVNDGSVVI DNIDITKPKAPIQKVRQKVAMVFQSFNLYAHKTIIDNLTLAPIKVMGVSKDEAVRTGMEY LERVGLADKASAYPSQLSGGQQQRVAIARALNMHPEIILFDEPTSALDPEMIQEVLDVMV DLSKQNITMVCVTHEMGFARQVADRVIFMDQGQIIEQGTPEHFFTSTENPRAKEFLSKII HNG >gi|284795519|gb|ADDQ01000030.1| GENE 38 32861 - 33688 1113 275 aa, chain + ## HITS:1 COG:SP0609 KEGG:ns NR:ns ## COG: SP0609 COG0834 # Protein_GI_number: 15900517 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Streptococcus pneumoniae TIGR4 # 42 274 18 247 254 241 54.0 1e-63 MKKQNKWLAGLSLLVLAGIIVGCGSGNNDSTSKSASSNKTVTVEQLKKAGKIKVGVKEDI PNFGYMNPDTNKNEGMEPDIARLIAKEITGSEENVEFVGVTAKTRGPLLDNGELDMVIAT FTITDERKKTYNFTTPYYTDEIGFLVRKEDNFSSMKDLDGKTIGVAQSATTKENLEKKAQ EEGIKFTYQELGSYPELKTALTSKRIDAFSVDKSILSGYVDGKTEILKDGFSPQEYGITT KKANTELNDYLNGLIEKWEKDGTLEKIYQDWGLKN >gi|284795519|gb|ADDQ01000030.1| GENE 39 33734 - 34447 749 237 aa, chain + ## HITS:1 COG:SP0608 KEGG:ns NR:ns ## COG: SP0608 COG0765 # Protein_GI_number: 15900516 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 17 236 4 224 225 254 60.0 1e-67 MFLLANISWLEEGPFALYRWEALFQDWRIFGQAFLYTILLSLGAILVAFALGIFFGSLSA TKSKLLHAISRVYVEFFQNTPLLIQFIVVYYGFPLLSPLLSFSITTIAILCVGLYHGAYI SEVVRSGIGAVPRGQFEAAYSQGLTYGQTMRYVILPQAWRIMLPPLTNQVVNLIKNTSTV AIISGADVMFAANSWSSVNLNYIPAFALAGFLYFILCFPLANLARKMEEKNKKAYSR >gi|284795519|gb|ADDQ01000030.1| GENE 40 34459 - 35124 654 221 aa, chain + ## HITS:1 COG:SP0607 KEGG:ns NR:ns ## COG: SP0607 COG0765 # Protein_GI_number: 15900515 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 5 220 2 217 219 249 64.0 2e-66 MPFSEEMRQLLTANNFQFLFNGLKLTLYISFVSIILSTIFGTILAVLRNQTHGPLKLLAS IYVEVVRNIPNLLWIYVIFLIFKIKSTPAGIVSFTVFTTAALAEIIRGGLNGVDKGQIEA ARSQGFSNWQILYHIVLPQAIRNVLPAIVSQFVTVIKDTSFLYSVIALQELFGKSYILMG RYAQTGQVFTIYGIVALIYFIINFSISQFSRWLSRNWAKSY >gi|284795519|gb|ADDQ01000030.1| GENE 41 35322 - 37745 3195 807 aa, chain - ## HITS:1 COG:SP0581_2 KEGG:ns NR:ns ## COG: SP0581_2 COG0072 # Protein_GI_number: 15900491 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase beta subunit # Organism: Streptococcus pneumoniae TIGR4 # 149 807 1 655 655 682 55.0 0 MLVSYKWLNEYVNLSNVTPQELADKMSVTGIEVEGVAVPEEGLKKIVVGEVKECVPHPNS DHLSICQVDIGEEELSQIVCGAPNVKAGIKVIVALPGSRIAGNQKIKKGKMRGEVSNGMI CSLEELGYSDNVVPKAYAEGIYYLPQEAVNGTPVFPYLDMDDAIIELSITPNRADALSMR GVAYEVGAIYRQTPQFNDPELKEDASDNVGNYVTVTVEDSQDAPAYQIRVIKDVTIAESP QWLQNRLMNEGIRPINNVVDVTNYILLLFGQPLHAFDYQKLDSKEILVRRATAAEKLITL DGETRQLTEENIVITNGKTPVGLAGVMGGANSEISQETTTVALEAALFNPLSIRKTSKQF NLRSESSSRFEKGINQATVGLACDVAAAMIAELADGTVVSGTAIGSEVAVKEAQVAVTLE RINQYLGTALDEATVNEIFEALGFAYEVNQGAYEITIPPRRWDIAIEADIIEEVARIYGY DHLPSTLPSGETVAGSLTKAQHVTRQLKSLLEGHGTSEAISYALTTEEKSRQFMMKESQT TRLQWPMSEERSVLRMNLISGLLDDVAYNVARKNNNIAFYEVGRVFYQTEDPTKNLPTEE NHLALALTGNTMVKDWQTKATAVDFYTVKGLVESIVAVLGLTEKISYQATTAIPEMHPGR TAWIYLEDEVVGFVGQVHPTTAKAYDIPETYVAELNLQQLVATEAGGVTYEAVSKFPAVS RDIALLVDETVTNQELVKTISDNAGKYLKEIHLFDVYQGEKLGAGKKSMAYSLTFVNAEA TLVDEEINRSMEKVEKALIEKHQVEVR >gi|284795519|gb|ADDQ01000030.1| GENE 42 37753 - 38799 1436 348 aa, chain - ## HITS:1 COG:L0354 KEGG:ns NR:ns ## COG: L0354 COG0016 # Protein_GI_number: 15673911 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase alpha subunit # Organism: Lactococcus lactis # 1 344 1 344 346 539 72.0 1e-153 MTLQAQLEALRDNTLKEIAQVATLKELNQIRVETLGKKGPITEVLRGMKNLSPEERPVVG GFANEIRDLLTEAIEARKVVLENEALNAALKEESLDVTLPGKQMPQGTRHILTQVMEEIE DIFLGMGYQVVEGYEVESDHYNFERMNLPKDHPARDMQDTFYISDEMLIRTHTSPVQART MEKHDFSKGALRMISPGKVFRRDTDDATHSHQFHQIEGLVVDKNVTMGDLKGTLEVMMKK MFGEDRKIRLRPSYFPFTEPSVEVDVSCFKCGGAGCNVCKHTGWIEILGAGMVHPDVLQM SGIDPTEYSGFAFGLGPDRVAMLRYGVNDIRNFYQNDLRFLNQFKVKE >gi|284795519|gb|ADDQ01000030.1| GENE 43 39118 - 39462 434 114 aa, chain - ## HITS:1 COG:lin1183 KEGG:ns NR:ns ## COG: lin1183 COG1733 # Protein_GI_number: 16800252 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 6 109 2 104 107 101 52.0 4e-22 MEKVKTESFVLCPKFEKSFSILGKKWNGLIIDVLLERGPQRFGELKEKIPMLSDRVLVER LKELEAEGIITKAVRCGEGNRLEYFLTEKGEDLQLAMEQIQHWAEKWVKDEECS >gi|284795519|gb|ADDQ01000030.1| GENE 44 39532 - 43326 3698 1264 aa, chain - ## HITS:1 COG:BS_addA KEGG:ns NR:ns ## COG: BS_addA COG1074 # Protein_GI_number: 16078127 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Bacillus subtilis # 8 1254 5 1232 1232 768 39.0 0 MSKTIPLRPANEQFTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRL LIVTYTEAAAREMKERIQVALQKAMNEEQNPERRRHFSRQIALLPTANISTLHAFCLTVI RRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSNDRSDDG LTNLIFSFYEFAKANPDPEAWINGLTQAYEVGNQLGESTLFQTYLKPLAVETLQRTLQRY EEMVTLTEGEEKLQKIWYLAQNEKEQTKQFLQFLERNDLESAYNLTELLSFDRYPTVRAE ELKPTAEQAKQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAY GAEKRLKNLVDFNDLEHYTLAILAKNQADGWHASEASLYYREKFDEVLVDEYQDINQLQE SILYWLRRPLSAEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQYGYGKEGKRIILAENFR SRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKATESV EFPELQSPELLIEDKTEGELYVTALKIRELIDQNFLIYDKKLKTDRPITYQDIVLLTPTK KNNLTILDVFKSLEIPVQVNDVQNYFQATEIRTMIALLQLIDNPYQDIPLAAVLRSPIVG LKENELVLIRLANKETSYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESLEKWREQARRNQ ISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGLFQFVRFIEKMQ EKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLNERYIFEENLGV GIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLFLVGSYKDQAAM WKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVVVSNVPQVKKHP ANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLSFNYPFEVATRT TSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSKPKFLDTVQAPS AAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNLEQIVAFFDTAL GKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIELDNQCILYDYK TDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGGVIIDMQTGNVV DFIK >gi|284795519|gb|ADDQ01000030.1| GENE 45 43319 - 46909 3605 1196 aa, chain - ## HITS:1 COG:lin2369 KEGG:ns NR:ns ## COG: lin2369 COG3857 # Protein_GI_number: 16801432 # Func_class: L Replication, recombination and repair # Function: ATP-dependent nuclease, subunit B # Organism: Listeria innocua # 1 1194 1 1157 1157 570 30.0 1e-162 MSVQFIRGTAVADLEAPLIKATKQWLEEDAQHEVFYLVPNHIKFEQEIQVLQKLRQLQTT TSDSITSTRLQVFSFYRLAWYYLQHTPFYSADVLSDAGAAMIFRKILVEAEEELQIFRGE INKPGFIQQLFQLYQEMREGNIEIAELYPFLEKQTENPKGQDLQLKFQDLTLIFTRFQLQ MSQYGYESAEIIQHLSEYLQTVDLSNVQFVISGYQQFTARELKLIEVLMAQAGSVKVALL LDKQYPHDLPDPRSLFYEAGQTYHQLYQLARQKQIPILSDYVEKKEVLITNPDLQGLNDY WIQSQEHLPPLSTSDWSGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRD LDCYENLLEPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTEL FMPMNQHATSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEA EEQEDVATMEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMW RLQAIEAGQLETARNHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKV PTAIDQVQVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQY LRGTTGRKIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFE KNETTIFDDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLTFWLNMEKALMNQPIAPL AKQVFESLTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDV FGLSPAATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTT SSRMNYIRYQLSQTIKKVSWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQG KIHVRGKIDRIDQLVTPESTYLSVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQ LVGQEAKPAGSLYLHVHNPTLSYEGKDDIEQQMLKKYQFDGLLMKDPDLLDHLDTSLQAK QSSLLFPIEESAKEQIKPGRRQEDKFVTEPELGALLSHNRNKFIEAGNQIIGGEVQLNPA YQGKERIACRYCPFRSVCDFDVMLKENNYHRIENLSKEEIMARLLNKDEEGATEDE >gi|284795519|gb|ADDQ01000030.1| GENE 46 47020 - 47568 711 182 aa, chain - ## HITS:1 COG:lin1308 KEGG:ns NR:ns ## COG: lin1308 COG0681 # Protein_GI_number: 16800376 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Listeria innocua # 23 163 26 179 188 146 53.0 2e-35 MSLKSKELIKTVVFFACLALGLFLLRQFVFTPVVVRGHSMDPTLADGERVITLKNTEINR FDIITFPAPDEPDKNYIKRVIGLPGDTIAYKDDTLYINGKEVDEPYLDEFKKALTDGQPL TGDFSLKEKVPADSYFVLGDNRRNSKDGRVIGFIHKKDILGEVKFVMWPFSRFGPIPEVS KQ >gi|284795519|gb|ADDQ01000030.1| GENE 47 47789 - 48508 973 239 aa, chain - ## HITS:1 COG:L176579 KEGG:ns NR:ns ## COG: L176579 COG1556 # Protein_GI_number: 15673717 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 6 238 5 226 227 214 49.0 1e-55 MTNEAIQNREPFLQNLREKLGVEKQPVSAHPFEPVNHLPEEQLADKTPAELLTIVKERVE TIHTNLVETTQENLLPTIQQIVAEFGGGNLLLPTDARFEAYGLADLAKSLEAVSVKQWQP GSEQREANIQTAAQANIAIAFAEFLLAESGTIVVESNAGQGRALHFLPKHYISIIPFSKL VPRSTQPAAFYTEKIEKGEKIGSAIHFISGPSNSGDIEMQLVVGLHGPLEVCYVVVMDR >gi|284795519|gb|ADDQ01000030.1| GENE 48 48501 - 49973 1301 490 aa, chain - ## HITS:1 COG:L175101 KEGG:ns NR:ns ## COG: L175101 COG1139 # Protein_GI_number: 15673716 # Func_class: C Energy production and conversion # Function: Uncharacterized conserved protein containing a ferredoxin-like domain # Organism: Lactococcus lactis # 1 487 1 490 490 772 72.0 0 MGLSTSNKPLSERIEESKKDVFMQKAVAKAQDAQWEKREGAREALGNWPQWRELGEQIRQ HTIQYLPDYLEEFSDNVAKRGGKVFFAQTAEEANEYVKQVVLEKKAKKIVKSKSMVTTEV DIDPMLLGLDDVSVMETDLAEFILQMDDWDEPSHIVFPSIHKNREQIRQVFAKKLGYQGD NDPVNLARCAREVMRKFFLEAEIGITGCNFAIADSGLINLNTNEGNADLTISIPKTQIVL MGMERIVPTMREAEVLDNLLARSAVGQNLTTYVTFAGQKNADESDGPEEFHVVILDNGRS KALGTAFQPVLQCIRCGSCLNVCPVYRHIGGHGYGSIYPGPIGAVLSPILGGYKQFGELP YASSLCGACTETCPVKIPLHELLIEHRKVMTDDLKMKHGFEDFQMRMVGKATGSPAMFKA AMKVDHAAAGILSKQKDITVENMYNHGGYLDKGPGLVKGWTDVRDLPRPPKSSENFRSWF KKHQEGEKND >gi|284795519|gb|ADDQ01000030.1| GENE 49 49986 - 50747 826 253 aa, chain - ## HITS:1 COG:L174321 KEGG:ns NR:ns ## COG: L174321 COG0247 # Protein_GI_number: 15673715 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Lactococcus lactis # 1 245 1 246 256 363 72.0 1e-100 MKVSIFSTCVVDLLFPNVGQAMVEVLERYGCETVLPTSQTCCGQPTYNSGYVTESTTTLK NQIDSFDGADYVVGPAGSCVGMMKEYHKFLADDPIYGPKAQRLAERTYEFSQFLYRVLGV KDVGATLYGKATYHRSCHMTRILNERESPFVLLDHVKGLEMIPLGHLENCCGFGGTFSVK MPAISEQMVTEKMNDVIDTGAEILISADMGCLMNIGGKFNRDGKKIKIMHIAEVLNHEVD EARMDQPQIISVG >gi|284795519|gb|ADDQ01000030.1| GENE 50 51099 - 51404 192 101 aa, chain + ## HITS:1 COG:no KEGG:EF1105 NR:ns ## KEGG: EF1105 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 101 1 101 101 120 98.0 2e-26 MFISFNMFILLIVATILMIFLIIYLTVTGNDKNNKKKQKKETKRTTPTLNKKTTVPPSQK PNVVTDVAKKSEPEKQAVQRTQKPTTREDETSQFTRSQRHK >gi|284795519|gb|ADDQ01000030.1| GENE 51 51585 - 51770 227 61 aa, chain + ## HITS:1 COG:no KEGG:EF1104 NR:ns ## KEGG: EF1104 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 61 1 61 61 73 100.0 2e-12 MSAKRFIQLFICYAISMIVAILLTDLFNFSSPIAYLVVASIIGYVVITVPLTIMTLLKNK N >gi|284795519|gb|ADDQ01000030.1| GENE 52 51941 - 53293 1321 450 aa, chain + ## HITS:1 COG:L18622 KEGG:ns NR:ns ## COG: L18622 COG1113 # Protein_GI_number: 15672791 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Lactococcus lactis # 3 443 2 441 446 541 71.0 1e-153 MSETQQTTLKKQLSSRHITMLALGGAIGAGLFKGSGEAIGIAGPSVLIAFLIGGAVLFIV MSGLGKLVLDGGDTHHGLSGLVRPFLGAHSADFIDWVYYSMWTINIIAEAVAAASFLQLW FPNIPAWFFVFILAILTTLINLYSVRLFAETEYWLAFAKISVIILLIIFGVYLVGQQMLG SGVFPTLQSITKHGGFAPHGMKGIVNSLLVVIYSYGGSELIAITVSEADDPKKAIPKAIR GVMGRIISFYIIPLFLLLIIFPWNTLAGTTVSPFVMVFEKMNIPFAADIVNFVIILALFS SINSGVYASSRLLYFRLKDKKGPMSKLAVLNKHQVPQRSVFFCASVLYLGVILSYFVGDE LFGYLAGSLSYTVLLIWILISAAAFVLSLKRGSLFEKSINLLALIILGLIFIGILFTNSL GVTLLTGLLYFVIFFSYRKKNDSFLLSDES >gi|284795519|gb|ADDQ01000030.1| GENE 53 53403 - 53804 515 133 aa, chain + ## HITS:1 COG:no KEGG:EF1102 NR:ns ## KEGG: EF1102 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 133 1 133 133 239 99.0 2e-62 MKKIGAILFIGLLIVGGYTGYRYYADTYKGEKAYAQVPLEIPERKQTVDDNQKSIDGQYS LHYRLTFVKSNGKTQVMDYERTDKNPQPLEPNAYIEATISKKRIIQSPVKIDKKEIPEKA FAQLNNRKTTSDN >gi|284795519|gb|ADDQ01000030.1| GENE 54 53801 - 54535 470 244 aa, chain - ## HITS:1 COG:L103246 KEGG:ns NR:ns ## COG: L103246 COG0500 # Protein_GI_number: 15673455 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Lactococcus lactis # 1 233 1 242 247 148 39.0 9e-36 MNNNEQELAEFWDEFAEEYEEIQQESPFPIARELRDFLVQEGLFPCQTFLDIAGGTGRYL PFFQEQVTEYTLADISQRMLEIAEAKAQSNVVFLHQSQERLIETGKKFQVVFSAMNPALD TPEKVNALCQLSEEWCLIFRLVEEQDSLFSPFEQESNPQLNWMAKYKAFLKKEQRPFFTK KFFFEASETISKDFFRNYFEEQWSVPILEQRVQEIFGSHEIKQNQRTIIYELIAIPCKKT TSDD >gi|284795519|gb|ADDQ01000030.1| GENE 55 54605 - 56200 1416 531 aa, chain - ## HITS:1 COG:jhp0343 KEGG:ns NR:ns ## COG: jhp0343 COG1132 # Protein_GI_number: 15611411 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Helicobacter pylori J99 # 2 529 9 543 551 152 25.0 2e-36 MTKKIWSHFQKSFTWYILIGVIVSLCSALAIYFFQQLLDHYQKSFQLGLLVAYGTTIILI PLLSYCEQKPKAYLTNGIYFYLKKLSLIKMSKISYEEYLKLGAGALLQKVEVGAAAGRNI HLNFYGRLFRELIPETLFNLFFIALIDKKLLPAILIGYVIVFILTKILLKTLQNMKEKTL ISEEAMNATLIRGMTELVTFRINRKYKKEIENYSLMAEENSQNITKMTMIHEFFFGFFAL LVALIKVSIVVLSFTNVVTLSLGGLVAIVMYIDRIYTPIAIFNVLFVQYNLDKVAYQRLE DFYKKEDDPDLAVPGKVLPEIQTISLKDVCFSVDSQTIMSQQNRQFSMNKTYGLIGKSGT GKSTLIKLILGLLKPTEGTVYVNQFPLTQFNLEDYYEKVFYLSQDVPIFQGTLKENIVLN QEISDEQVIEAMYRFQLGELYERLPEGLNTIVSEKGMNFSGGEKQRIAFTRLAFTQAEIL ILDEATSALDEKTEEKVLQEVQKFTHNKLTILVTHRPKTLRFVDEIIDLNE >gi|284795519|gb|ADDQ01000030.1| GENE 56 56325 - 56702 218 125 aa, chain - ## HITS:1 COG:no KEGG:EF1099 NR:ns ## KEGG: EF1099 # Name: not_defined # Def: collagen adhesin protein # Organism: E.faecalis # Pathway: not_defined # 1 125 550 674 674 190 98.0 1e-47 TTEENGATETAESSQPEVHVSPTKEITTTEKKQPSTETTVEKNKNVTSKNQPQILNAPLN TVKNEGSPQLAPQLLSEPIQKLNEANGQRELPKTGTTKTPFMLIAGILASTFAVLGVSYL QIRKN Prediction of potential genes in microbial genomes Time: Sun May 15 12:40:18 2011 Seq name: gi|284795518|gb|ADDQ01000031.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont68.1, whole genome shotgun sequence Length of sequence - 17225 bp Number of predicted genes - 18, with homology - 18 Number of transcription units - 10, operones - 6 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 2 1 Op 2 . - CDS 1076 - 1966 293 ## gi|255970899|ref|ZP_05421485.1| predicted protein - Prom 1993 - 2052 7.1 - Term 2004 - 2046 7.1 3 2 Op 1 8/0.000 - CDS 2058 - 2492 665 ## COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases 4 2 Op 2 . - CDS 2494 - 3732 1623 ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase + Prom 3943 - 4002 7.8 5 3 Tu 1 . + CDS 4030 - 4782 977 ## COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH) + Term 4821 - 4877 9.2 - Term 4806 - 4868 12.2 6 4 Op 1 . - CDS 4880 - 5278 393 ## EF0281 hypothetical protein 7 4 Op 2 . - CDS 5323 - 6258 1140 ## COG0053 Predicted Co/Zn/Cd cation transporters - Prom 6309 - 6368 5.1 8 5 Op 1 . - CDS 6401 - 7075 837 ## COG1418 Predicted HD superfamily hydrolase 9 5 Op 2 . - CDS 7088 - 7600 255 ## PROTEIN SUPPORTED gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) 10 5 Op 3 . - CDS 7613 - 8104 593 ## COG0350 Methylated DNA-protein cysteine methyltransferase - Prom 8130 - 8189 2.6 + Prom 8114 - 8173 6.2 11 6 Tu 1 . + CDS 8243 - 8809 269 ## COG2169 Adenosine deaminase + Term 8839 - 8883 1.7 - Term 8780 - 8823 6.9 12 7 Tu 1 . - CDS 8827 - 9570 609 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - Prom 9599 - 9658 9.6 - Term 9628 - 9679 16.6 13 8 Op 1 . - CDS 9708 - 10526 975 ## COG0406 Fructose-2,6-bisphosphatase 14 8 Op 2 . - CDS 10547 - 12013 1504 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase - Prom 12036 - 12095 1.5 - Term 12050 - 12113 5.7 15 9 Op 1 8/0.000 - CDS 12136 - 13566 1676 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 16 9 Op 2 7/0.000 - CDS 13590 - 15488 2540 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 17 9 Op 3 . - CDS 15562 - 16404 858 ## COG3711 Transcriptional antiterminator - Prom 16609 - 16668 9.6 - TRNA 16647 - 16718 70.2 # Glu TTC 0 0 - TRNA 16734 - 16821 62.7 # Ser GCT 0 0 + Prom 16551 - 16610 7.2 18 10 Tu 1 . + CDS 16831 - 17136 143 ## gi|257147743|emb|CAR86716.1| Putative protein without homology - TRNA 16832 - 16905 92.9 # Ile GAT 0 0 - TRNA 16919 - 16989 71.8 # Gly TCC 0 0 - TRNA 17004 - 17076 75.8 # Phe GAA 0 0 - TRNA 17082 - 17155 80.1 # Asp GTC 0 0 Predicted protein(s) >gi|284795518|gb|ADDQ01000031.1| GENE 1 49 - 984 1064 311 aa, chain - ## HITS:1 COG:L192589 KEGG:ns NR:ns ## COG: L192589 COG0167 # Protein_GI_number: 15673534 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Lactococcus lactis # 3 311 2 311 311 438 67.0 1e-123 MDISVEFSGHKLANVLMNASGIHCMTIKEMDELAASQAGAFVAKTATPNPRQGNEEPRYF DTPLGSINSMGLPNLGIDYYLDYQIACQKEFPEELRFLSVSGMNYEENIAILKKVQESEY TGVTEFNLSCPNLPGKPQIAYDFELTEKLLTEVFQFFTKPLGVKLPPFFDIAHFDAMAEI LNKFPLVYVNSINSIGNGLYIDSDKEEVVIKPKGGFGGLGGEYVKPTALANVRAFAQRLK PEIKIIGTGGITCGKDVFEHLLCGATLVQVGTQLHQEGPQVFERLAKELQEIMAAKGYES IEEFRGKLKEM >gi|284795518|gb|ADDQ01000031.1| GENE 2 1076 - 1966 293 296 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|255970899|ref|ZP_05421485.1| ## NR: gi|255970899|ref|ZP_05421485.1| predicted protein [Enterococcus faecalis T1] # 1 296 1 296 296 507 99.0 1e-142 MLKNLQPQFFKQIVIYGLLFVFWGTLNYFFESIPKGLNRIVFGILSFTYIFLYMKNRKSV SGNKGDLAIWILIISGFFALVDVTYYLNIRGKITLYFSLVYILSIILIFIVYELKSDPKI KLKNILKISAVVYSLGFFDRDWWTVIPLFTAFVLLFYSKEGIDYFAQEELTEIKIPNFLQ KKWRRTKFLIVIWSVMLYSSFVISDILESCGWINKISLYFFPEDSLEFYRIWFSKGLIRL CILGIIYILGKKYLLKFKPVNTLIELYKEVARTNETEFKRNTKKHQIQKNARRKYK >gi|284795518|gb|ADDQ01000031.1| GENE 3 2058 - 2492 665 144 aa, chain - ## HITS:1 COG:L160425 KEGG:ns NR:ns ## COG: L160425 COG0764 # Protein_GI_number: 15672547 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases # Organism: Lactococcus lactis # 2 142 4 143 151 197 71.0 6e-51 MKKVMTATEIMEMIPNRYPICYIDYVDEIIPNEKIIATKNVTINEEFFQGHFPGNPTMPG VLIIEALAQVGSILILKMDQFEGETAYIGGINKAKFRQKVVPGDVLKLHFEIVKLRDFVG IGKATAYVEDKKVCECELTFIVGR >gi|284795518|gb|ADDQ01000031.1| GENE 4 2494 - 3732 1623 412 aa, chain - ## HITS:1 COG:CAC3573 KEGG:ns NR:ns ## COG: CAC3573 COG0304 # Protein_GI_number: 15896807 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Clostridium acetobutylicum # 2 410 3 411 411 440 56.0 1e-123 MKRVVITGMGAVTPLGNTVKEFWHNLVDGKLGIGKITKFDSEDTGVALAGEVKEFDPSAV LERKEQKRMDLFSQYGLVAALEAWEMSGLTEATIDPTRLGVIVGSGIGGMTTLQDQVRVM DKKGAKRVTPFFVPMVIANMAAGNISIRLGAKGPSQTIVTACASATNAIGEAFRTIKYGL ADMMVTGGTEATVCEIGIAGFAALNALNTTEDATRASIPFDKERKGFVMGEGAGMLVLEE LEHAQKRGATIYGEIVGYGSNCDASHMTAPLKDGSGAAAAMEMAIAEAGITPEQIGYINA HGTSTPANDAAETTAIKRVFGERASQIPISSTKSMTGHLLGAAGGIEAIACVQTLQEGKA HPTVGYQVADPDCDLDYVTEGARDITADYTISNSFGFGGHNGVICLKKWEEN >gi|284795518|gb|ADDQ01000031.1| GENE 5 4030 - 4782 977 250 aa, chain + ## HITS:1 COG:L161132 KEGG:ns NR:ns ## COG: L161132 COG0623 # Protein_GI_number: 15672548 # Func_class: I Lipid transport and metabolism # Function: Enoyl-[acyl-carrier-protein] reductase (NADH) # Organism: Lactococcus lactis # 1 250 1 250 250 337 71.0 1e-92 MFLQNKNVVVMGIANKKSIAWGCAKALKDQGANVIYTYQNERMKKQVVKLADENDLLVEC DVASDASIQAAFETIKNEVGTIDGLVHAIAFAKKEELSGNVSDITRDGFLLAQDISSYSL LAVTHYAKPLLNPGSGIVTLTYLGSERAIPNYNMMGIAKASLETAVKYLAFELAADKIRV NGISAGAIKTLAVTGVKDYDQLISISNERTPDKTGVTIEEVGNTCAFLVSELASGVVGDI IYVDKGVHLT >gi|284795518|gb|ADDQ01000031.1| GENE 6 4880 - 5278 393 132 aa, chain - ## HITS:1 COG:no KEGG:EF0281 NR:ns ## KEGG: EF0281 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 132 1 132 132 240 96.0 1e-62 MQEAIITSTVDLTSGGCNACGLVEDTVYTLAMNGVDIPLDGLTVAHLVSAVVARNGFKQE LQMDMLDDEYILYRKEDTAVTFKEAYNHLSYDNGSEKIQSKNKLEDLSKLFEQVNQILTT VFGIETVNFIIE >gi|284795518|gb|ADDQ01000031.1| GENE 7 5323 - 6258 1140 311 aa, chain - ## HITS:1 COG:L67760 KEGG:ns NR:ns ## COG: L67760 COG0053 # Protein_GI_number: 15673428 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted Co/Zn/Cd cation transporters # Organism: Lactococcus lactis # 1 310 1 310 314 392 69.0 1e-109 METKKSSGMFAVIAALIANILVAISKFVGFALSGSTAMMNESIHSVVDCSNQVLLLFGNK RASRGQSALHQFGEGRAKYFFSTIVATMLFFGGGALGVMEAIQKLLHPSHEVENVAIVIG ILIFGLLVEGSSLRVAMKEIKELNTEKLSLLKFLRESRHSEILIIFTEDFCAVIGLCLAL VGTLLTMVTGIAAFDAISGLLIGLLLMCAAIFLAKEFYSLIIGESVTATDLAKIKTAFDR ADVEKLIDVKTVHLGPTEILVAAKIDVVEPMEEDAPDVVNAIERDIRSKMPDKKIYIYIE VDDYDVNYVRK >gi|284795518|gb|ADDQ01000031.1| GENE 8 6401 - 7075 837 224 aa, chain - ## HITS:1 COG:BH2835 KEGG:ns NR:ns ## COG: BH2835 COG1418 # Protein_GI_number: 15615398 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Bacillus halodurans # 11 222 3 213 215 214 50.0 1e-55 MFENESLSFEEQTIIQAAARYVQQELANEASGHDWWHIYRVTQLAKTIAEKEQANLFLCI LTALLHDIGDEKFNESEEAGLLKVQQWLEANNVSTEQTNHILSIIANMSFKGGNTGKTVT TLEGKVVQDADRLDAIGAIGIARVMAYSGNKGRLIHDPHKQPREQLTQEEYRNGEDTAIM HFYEKLLKLKEQINTNYGRLLAEKRHQFMELYLEEFYQEWDGHR >gi|284795518|gb|ADDQ01000031.1| GENE 9 7088 - 7600 255 170 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) [Campylobacter concisus 13826] # 10 162 20 172 185 102 33 1e-21 MNNYQWYTEQWGKPTREDDLLFLLLTVGVFQVGLSWKAAAGKKVAFMKNFCQMKPEKVAA LLPDEVDRIVADPDMIRNRRKIEATIKNAQAILKVQEEFGSFANYLWQFVKNVPVLSIYE EAYQVPRTQLLSDNVAKDLKKRGFSFVGPIVTNMFLKASGIIQVEILNPE >gi|284795518|gb|ADDQ01000031.1| GENE 10 7613 - 8104 593 163 aa, chain - ## HITS:1 COG:lin2344 KEGG:ns NR:ns ## COG: lin2344 COG0350 # Protein_GI_number: 16801407 # Func_class: L Replication, recombination and repair # Function: Methylated DNA-protein cysteine methyltransferase # Organism: Listeria innocua # 3 162 2 152 160 157 51.0 7e-39 MAKKIYYAQQEWQNDHYYLGVTDAGLAFVGSANQSIEELKNWYPQAQLEASEKKTAPYKE ALISYLNQHSTTFACPIDIEGTPFQKEVWQALQEIPYGETMTYQEISEKIGRPRAVRAVG TAIGKNPLLMVIPCHRVIGSKGQLTGYRGGLAMKQALLTFEQS >gi|284795518|gb|ADDQ01000031.1| GENE 11 8243 - 8809 269 188 aa, chain + ## HITS:1 COG:lin2345 KEGG:ns NR:ns ## COG: lin2345 COG2169 # Protein_GI_number: 16801408 # Func_class: F Nucleotide transport and metabolism # Function: Adenosine deaminase # Organism: Listeria innocua # 3 185 2 184 184 189 48.0 2e-48 MKTTYRLTQKRWEAIQNNNTQFDGDFFYGVTTTKIFCRPSCPSRVPNKNHVLIFKTAQEA LTLGFRPCKRCQPTGQVVPNEEWVAQIKQFIDRHSAEPLSLDYLAQACHGSPFHLQRTFK EQTKQTPLAYLISVRIRQAQELLLHSPLTIQQIAKKVGFQTAAYFATTFKKETGVTPSVY RSKNEPKK >gi|284795518|gb|ADDQ01000031.1| GENE 12 8827 - 9570 609 247 aa, chain - ## HITS:1 COG:L130660 KEGG:ns NR:ns ## COG: L130660 COG0596 # Protein_GI_number: 15673278 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Lactococcus lactis # 6 241 9 245 249 217 49.0 2e-56 MKNRTKSRWKKIVLGIGIFLAVLVIGLTIFIKNSTYQATDSALKISQSATQEKNYDYYTN GQKNDTALIFYPGALVAPASYSEWAQEVATKGYDVYVVHFPLNLAVLAPNAAEQIIKDHP QQNFVLAGHSLGGVMASRFVAENEQRIKGMIYLASYPDEKGALNKQNLPVLSITATNDGV LNWTSYQKAKQFLPKDTQYVSIEGGNHAGFGNYGVQKGDNKATISNEQQQTEISQLIVAW LQSRPNK >gi|284795518|gb|ADDQ01000031.1| GENE 13 9708 - 10526 975 272 aa, chain - ## HITS:1 COG:lin0517 KEGG:ns NR:ns ## COG: lin0517 COG0406 # Protein_GI_number: 16799592 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 1 269 1 270 270 288 58.0 8e-78 MKKRLTIVGMLFLAILVMVGCGKNQQATTKEKETKPEELTLYIVRHGKTMLNTTDRVQGW SDAVLTPEGEKVVTATGIGLKDVAFQNAYSSDSGRALQTAQLILDQNKAGKDLEVVRDPD LREFNFGSYEGDLNKTMWQDIADDQGVSLEEFMKNMTPESFANSVAKLDQQREESKNNWP AEDYATITKRLKKGLDKIVATESANSGNGNVLVVSHGLSISALLATLFDDFKVPEGGLKN ASVTTIHYKNGEYTLDKVNDVSYLEAGEKESK >gi|284795518|gb|ADDQ01000031.1| GENE 14 10547 - 12013 1504 488 aa, chain - ## HITS:1 COG:lin0017 KEGG:ns NR:ns ## COG: lin0017 COG2723 # Protein_GI_number: 16799096 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Listeria innocua # 3 485 6 476 477 550 55.0 1e-156 MGFPENFLWGGATAANQYEGGYLSGGKGLSTLDAITGGSQTEPRRITYLTKEGQKASCTR DQALPEGAIGYIDEELYYPSHVATDFYHHYEEDIALFAEMGFKCFRLSIAWSRICPNGTK EINEEGLAFYDKVFDTLLRHGIEPVVTINHFDIPMYLADEYDGWKNREVIDFFVFFCETI FTRYQDKVKYWMTFNEINFLRSWTQIGIHNNDKQSKYQAAHHLFVASAKAVELGHSINPD FQIGMMVAYIPSYPLSCKPEDVMAAVQFNREQEFYMDVQAKGYYPAHKLKEFEREGMTIQ MESEDLAIIQKGTVDYIGFSYYMSTVSTAYPEEVNYVGGNQMPAVKNPYLQESEWGWAVD PLGLRISLCQLSDRYNMPLFVVENGFGAVDTLQEDGSIVDDYRIDYFKQHIEAMRTAVEE DGVNLIGYTPWGCIDLVSAGTGEMKKRYGFIYVDMDDQGQGTLKRTKKKSFNWYKQVIAS NGENLTTE >gi|284795518|gb|ADDQ01000031.1| GENE 15 12136 - 13566 1676 476 aa, chain - ## HITS:1 COG:L121426 KEGG:ns NR:ns ## COG: L121426 COG2723 # Protein_GI_number: 15673653 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Lactococcus lactis # 1 476 1 476 477 787 76.0 0 MAFRKDFLWGGATAANQCEGGYNEGGRGLANVDLAPTGPDRFPVITGEKKMFNFDEEHFY PAQEAIDMYHRYKEDIALFGEMGFKTYRLSIAWSRIFPMGDETEPNEEGLKFYEDLFKEC HKYGIEPLVTITHFDCPMHLVEEYGAWRSRKLVGFYENLCRVIFNRYKGLVKYWLTFNEI NMILHAPFMGAGLYFEEGENKEQVKYQAAHHELLASAIATKIAHEVDPENQVGCMLAAGS NYAYTCKPEDVFAARQADRENYFFIDVQSRGEYPAYALKEMARKGIQIEMEEGDEELLKE HTVDFISFSYYSSRVTSTDPEINEQTAGNIFASVKNPYLKASEWGWQIDPLGLRITMNDL YDRYQKPLFIVENGLGAVDTPDENGYVVDDYRIDYLAAHIQAMKDAVEQDGVDLLGYTTW GCIDLVSAGTGEMKKRYGFIYVDRDNEGNGTLKRSKKKSFDWYKKVIATNGEDLSN >gi|284795518|gb|ADDQ01000031.1| GENE 16 13590 - 15488 2540 632 aa, chain - ## HITS:1 COG:lin0026_2 KEGG:ns NR:ns ## COG: lin0026_2 COG1263 # Protein_GI_number: 16799105 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Listeria innocua # 85 461 3 375 399 309 49.0 1e-83 MGKYHELAEKIVKNVGGQENINSLTHCITRLRFKLKDESQANDDVLKNMDGVVTVMKSGG QYQVVIGNHVPAVYEEVVSIAGLSGEREEEASSGNLFDRLIDILSGCFQPFLGALAAAGM VKGLNALLVFLKLYTATSGTYTMLNGIGDAIFYFMPVILGYTAAKKFRLHPMVGIVIGAA LCYPTIQGSALQTAFETTAGAGAAAPYNLFGLPAYDTFMGIPWVGANYTSSVVPIIFIIA FAAQVQKVFKRIIPEVVQTFLVPFFVLLIALPIGFLVIGPIVSMLTDLLSAGFTALMSFS PALYGLILGFFWQVLIIFGLHWSVVPLAIMQVTQEGSSQVLTGSFAASFAQTAVVLAMFF KLKDKKLKALCPPAIISGIFGVTEPAIYGITLPKKWPFIYSMIGGAVGGLYLMINNVTAY TMGRLGIFGVLNFINGDDASGMIQSFIAIAIAAVVGFGLTFFFWKDNTVEEEEVIIDKTT IKKENITSPVKGRVLSLKNAEDPAFANGALGNGVVIEPTEGKVVAPFDGTIVTLFPTKHA LGLISDNGTELLIHIGIDTVQLEGEGFEAFVKQGDRVKKGQTLVTFDLEGIKKAGFSTQI PIVVTNTADYLDILEVGSNEVSTSDDLLTALI >gi|284795518|gb|ADDQ01000031.1| GENE 17 15562 - 16404 858 280 aa, chain - ## HITS:1 COG:BS_licT KEGG:ns NR:ns ## COG: BS_licT COG3711 # Protein_GI_number: 16080959 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus subtilis # 1 276 1 275 277 256 48.0 4e-68 MIIHKILNNNVVITLDDDKREQIVMGKGIAFKKRIGDWVPDESIDQVFYLANQETSLKFQ ELLGNIPLEMMKLSDDIIVYAKSTLKKSLNDTIYISLTDHLYTALERKKQGIAIKNLLLW DIKRFFPEEYEVGVNALKMVQKRVGMELSTDEAGFIALHLVNAEMEEEVGNIYELTKLMQ EITNIVKYYFKVSFDEDSVYFYRFSTHLKFFCYRLLHQREVVENDDEELYAVIKKKYLNA YRCVEKISLYLNENYDYQVSNEERLYLTIHIARIVQTTEQ >gi|284795518|gb|ADDQ01000031.1| GENE 18 16831 - 17136 143 101 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|257147743|emb|CAR86716.1| ## NR: gi|257147743|emb|CAR86716.1| Putative protein without homology [Lactobacillus rhamnosus GG] # 1 100 1 102 103 97 59.0 3e-19 MGLNGLEPSTSRLSGVRSNQLSYRPQIRKKRVTRIELATTAWKAVVLPLNYTRKFFLDGA GQNRTADTWSFNPLLYQLSYRAKNGLDGTRTRDLLRDRQAF Prediction of potential genes in microbial genomes Time: Sun May 15 12:41:20 2011 Seq name: gi|284795517|gb|ADDQ01000032.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont73.1, whole genome shotgun sequence Length of sequence - 143177 bp Number of predicted genes - 142, with homology - 136 Number of transcription units - 70, operones - 36 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 131 - 190 9.6 1 1 Tu 1 . + CDS 262 - 522 139 ## gi|227519043|ref|ZP_03949092.1| hypothetical protein HMPREF0348_2026 + Term 707 - 771 5.4 + Prom 621 - 680 4.6 2 2 Tu 1 . + CDS 796 - 2088 1224 ## COG3328 Transposase and inactivated derivatives 3 3 Op 1 . - CDS 2182 - 2346 130 ## gi|227519041|ref|ZP_03949090.1| hypothetical protein HMPREF0348_2024 4 3 Op 2 . - CDS 2343 - 2567 111 ## EF1853 hypothetical protein - Prom 2609 - 2668 12.7 + Prom 2613 - 2672 7.6 5 4 Tu 1 . + CDS 2705 - 3967 847 ## COG1455 Phosphotransferase system cellobiose-specific component IIC + Term 4014 - 4071 1.5 + Prom 3987 - 4046 7.3 6 5 Tu 1 . + CDS 4139 - 5974 1526 ## COG1874 Beta-galactosidase + Prom 6460 - 6519 1.9 7 6 Op 1 . + CDS 6542 - 6943 328 ## EF1850 hypothetical protein 8 6 Op 2 . + CDS 6937 - 7182 65 ## EF1849 hypothetical protein + Prom 7335 - 7394 6.2 9 7 Op 1 . + CDS 7531 - 7842 173 ## EF1848 hypothetical protein + Prom 7845 - 7904 2.1 10 7 Op 2 . + CDS 7945 - 9123 766 ## COG0582 Integrase + Term 9288 - 9330 11.9 + Prom 9745 - 9804 11.4 11 8 Tu 1 . + CDS 9849 - 10016 122 ## gi|227519032|ref|ZP_03949081.1| hypothetical protein HMPREF0348_2015 + Prom 10044 - 10103 4.1 12 9 Op 1 . + CDS 10182 - 10265 133 ## 13 9 Op 2 . + CDS 10281 - 10697 375 ## EF1844 hypothetical protein + Term 10743 - 10811 22.1 14 10 Tu 1 . - CDS 10871 - 11776 642 ## COG0726 Predicted xylanase/chitin deacetylase - Prom 11819 - 11878 10.3 + Prom 11903 - 11962 8.9 15 11 Op 1 . + CDS 12000 - 12578 442 ## COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism + Prom 12589 - 12648 1.6 16 11 Op 2 . + CDS 12669 - 12800 68 ## 17 11 Op 3 . + CDS 12814 - 13659 746 ## LCABL_21280 hypothetical protein + Term 13690 - 13747 12.5 18 12 Tu 1 . + CDS 13995 - 14747 697 ## COG1349 Transcriptional regulators of sugar metabolism + Term 14751 - 14788 7.1 - Term 14737 - 14774 7.1 19 13 Op 1 10/0.000 - CDS 14788 - 16191 1362 ## COG3775 Phosphotransferase system, galactitol-specific IIC component - Prom 16223 - 16282 7.5 20 13 Op 2 13/0.000 - CDS 16286 - 16588 428 ## COG3414 Phosphotransferase system, galactitol-specific IIB component 21 13 Op 3 . - CDS 16590 - 17084 434 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) - Prom 17122 - 17181 10.6 + Prom 17080 - 17139 8.7 22 14 Op 1 4/0.059 + CDS 17307 - 17735 699 ## COG0698 Ribose 5-phosphate isomerase RpiB 23 14 Op 2 . + CDS 17761 - 18276 540 ## COG0698 Ribose 5-phosphate isomerase RpiB + Term 18285 - 18341 1.1 - Term 18442 - 18478 4.1 24 15 Tu 1 . - CDS 18522 - 18809 263 ## EF1833 hypothetical protein 25 16 Op 1 9/0.000 + CDS 19390 - 19821 463 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 26 16 Op 2 13/0.000 + CDS 19836 - 20333 489 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 27 16 Op 3 13/0.000 + CDS 20367 - 21218 871 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 28 16 Op 4 . + CDS 21220 - 22062 936 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID + Term 22191 - 22247 4.4 29 17 Op 1 . - CDS 22266 - 22976 662 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) 30 17 Op 2 . - CDS 22991 - 23971 804 ## COG1641 Uncharacterized conserved protein - Prom 24043 - 24102 2.1 + Prom 24389 - 24448 6.0 31 18 Op 1 . + CDS 24486 - 25502 1377 ## COG1064 Zn-dependent alcohol dehydrogenases 32 18 Op 2 . + CDS 25559 - 25945 215 ## EF1825 hypothetical protein + Term 25954 - 26004 16.2 + Prom 26092 - 26151 7.5 33 19 Tu 1 . + CDS 26286 - 26369 80 ## + Prom 26396 - 26455 3.9 34 20 Op 1 . + CDS 26476 - 32076 6406 ## COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases 35 20 Op 2 . + CDS 32158 - 34116 1691 ## COG1705 Muramidase (flagellum-specific) + Term 34212 - 34272 2.0 + Prom 34426 - 34485 6.5 36 21 Op 1 . + CDS 34535 - 35266 555 ## COG3279 Response regulator of the LytR/AlgR family + Prom 35273 - 35332 4.8 37 21 Op 2 . + CDS 35355 - 36083 455 ## EF1821 agrBfs protein 38 21 Op 3 . + CDS 36080 - 37351 690 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain + Prom 37409 - 37468 3.9 39 22 Op 1 . + CDS 37589 - 39118 1711 ## COG3227 Zinc metalloprotease (elastase) 40 22 Op 2 . + CDS 39167 - 40021 823 ## COG3591 V8-like Glu-specific endopeptidase + Term 40029 - 40089 11.5 - Term 40023 - 40071 4.6 41 23 Tu 1 . - CDS 40169 - 40999 640 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I + Prom 41223 - 41282 5.9 42 24 Tu 1 . + CDS 41391 - 42245 583 ## COG0583 Transcriptional regulator + Term 42273 - 42339 11.1 + Prom 42449 - 42508 4.2 43 25 Op 1 . + CDS 42627 - 44015 1098 ## COG0477 Permeases of the major facilitator superfamily 44 25 Op 2 . + CDS 44057 - 46117 1810 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily + Term 46178 - 46234 5.2 + Prom 46465 - 46524 11.6 45 26 Op 1 5/0.059 + CDS 46618 - 47463 773 ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases 46 26 Op 2 . + CDS 47453 - 48355 708 ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases 47 26 Op 3 . + CDS 48288 - 48419 56 ## + Term 48458 - 48513 17.1 + Prom 48487 - 48546 9.4 48 27 Op 1 7/0.000 + CDS 48741 - 49472 675 ## COG2188 Transcriptional regulators 49 27 Op 2 . + CDS 49484 - 50656 1438 ## COG2222 Predicted phosphosugar isomerases 50 27 Op 3 3/0.059 + CDS 50679 - 51674 1212 ## COG3684 Tagatose-1,6-bisphosphate aldolase 51 27 Op 4 . + CDS 51690 - 52631 921 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 52 27 Op 5 1/0.235 + CDS 52694 - 54478 1826 ## COG1874 Beta-galactosidase 53 27 Op 6 13/0.000 + CDS 54475 - 54954 563 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 54 27 Op 7 13/0.000 + CDS 54968 - 55867 1285 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 55 27 Op 8 4/0.059 + CDS 55854 - 56663 903 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 56 27 Op 9 . + CDS 56683 - 57090 517 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA + Term 57144 - 57195 13.2 + Prom 57148 - 57207 5.4 57 28 Tu 1 . + CDS 57240 - 61214 3919 ## EF1800 hypothetical protein + Term 61230 - 61284 13.2 + Prom 61365 - 61424 4.6 58 29 Tu 1 . + CDS 61455 - 62609 953 ## COG0628 Predicted permease + Term 62617 - 62655 6.2 + Prom 62642 - 62701 10.8 59 30 Tu 1 . + CDS 62730 - 63374 489 ## EF1797 hypothetical protein - Term 63337 - 63395 8.6 60 31 Tu 1 . - CDS 63421 - 63990 699 ## EF1796 putative lipoprotein - Prom 64021 - 64080 6.3 + Prom 64126 - 64185 5.1 61 32 Tu 1 . + CDS 64211 - 64663 646 ## COG4876 Uncharacterized protein conserved in bacteria + Prom 64755 - 64814 6.5 62 33 Tu 1 . + CDS 64854 - 65873 1183 ## COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase + Prom 65919 - 65978 6.4 63 34 Op 1 . + CDS 66007 - 66327 432 ## EF1792 hypothetical protein 64 34 Op 2 . + CDS 66390 - 68030 1612 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Term 68034 - 68096 13.1 - Term 68026 - 68075 11.5 65 35 Tu 1 . - CDS 68128 - 69003 333 ## PROTEIN SUPPORTED gi|90022317|ref|YP_528144.1| ribosomal protein S15 - Prom 69206 - 69265 8.4 + Prom 69071 - 69130 3.8 66 36 Tu 1 . + CDS 69153 - 70019 1091 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs + Term 70050 - 70082 2.5 + Prom 70103 - 70162 8.7 67 37 Op 1 29/0.000 + CDS 70191 - 70679 552 ## COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase 68 37 Op 2 1/0.235 + CDS 70672 - 71796 869 ## COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) + Term 71802 - 71830 -0.0 + Prom 71805 - 71864 9.2 69 38 Op 1 15/0.000 + CDS 71948 - 72661 688 ## COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase 70 38 Op 2 23/0.000 + CDS 72675 - 72926 352 ## COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component 71 38 Op 3 9/0.000 + CDS 72927 - 73601 560 ## COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain 72 38 Op 4 10/0.000 + CDS 73598 - 75817 2117 ## COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain 73 38 Op 5 13/0.000 + CDS 75793 - 77232 1409 ## COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase 74 38 Op 6 21/0.000 + CDS 77234 - 78265 764 ## PROTEIN SUPPORTED gi|149378138|ref|ZP_01895857.1| Ribosomal protein S7 75 38 Op 7 10/0.000 + CDS 78262 - 78834 277 ## COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN 76 38 Op 8 17/0.000 + CDS 78831 - 80372 1713 ## COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) 77 38 Op 9 . + CDS 80391 - 81638 1253 ## COG0151 Phosphoribosylamine-glycine ligase + Term 81653 - 81700 4.2 + Prom 81672 - 81731 8.9 78 39 Op 1 . + CDS 81767 - 82096 342 ## EF1776 hypothetical protein 79 39 Op 2 . + CDS 82117 - 82851 542 ## EF1775 hypothetical protein + Term 82855 - 82906 14.2 - Term 82849 - 82886 5.3 80 40 Tu 1 . - CDS 82891 - 83412 430 ## COG4708 Predicted membrane protein - Prom 83448 - 83507 2.0 81 41 Op 1 . - CDS 83558 - 84322 247 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 - Prom 84342 - 84401 2.8 82 41 Op 2 . - CDS 84407 - 84640 454 ## EF1772 hypothetical protein 83 41 Op 3 . - CDS 84630 - 85292 570 ## COG1739 Uncharacterized conserved protein - Prom 85316 - 85375 10.4 84 42 Tu 1 . + CDS 85434 - 85721 326 ## EF1770 hypothetical protein + Prom 85732 - 85791 6.1 85 43 Tu 1 . + CDS 85842 - 86177 445 ## COG1440 Phosphotransferase system cellobiose-specific component IIB + Term 86181 - 86230 13.3 86 44 Tu 1 . - CDS 86501 - 87217 416 ## COG3910 Predicted ATPase - Prom 87459 - 87518 5.7 + Prom 87266 - 87325 7.1 87 45 Op 1 6/0.059 + CDS 87489 - 88805 551 ## COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) 88 45 Op 2 6/0.059 + CDS 88846 - 89481 331 ## COG1040 Predicted amidophosphoribosyltransferases + Term 89557 - 89602 3.1 + Prom 89493 - 89552 4.5 89 46 Op 1 7/0.000 + CDS 89620 - 90171 669 ## PROTEIN SUPPORTED gi|116333275|ref|YP_794802.1| ribosome-associated protein Y (PSrp-1) + Term 90184 - 90225 8.9 + Prom 90297 - 90356 6.6 90 46 Op 2 . + CDS 90427 - 92964 3032 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) + Term 92977 - 93018 6.4 91 47 Op 1 . + CDS 93041 - 93115 75 ## 92 47 Op 2 4/0.059 + CDS 93159 - 94142 1053 ## COG1186 Protein chain release factor B + Prom 94158 - 94217 8.8 93 48 Op 1 28/0.000 + CDS 94248 - 94934 357 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 94 48 Op 2 . + CDS 94927 - 95811 997 ## COG2177 Cell division protein + Term 95813 - 95861 11.2 + Prom 95869 - 95928 10.3 95 49 Op 1 39/0.000 + CDS 95987 - 96841 1002 ## COG0226 ABC-type phosphate transport system, periplasmic component + Prom 96868 - 96927 4.3 96 49 Op 2 38/0.000 + CDS 96964 - 97884 1012 ## COG0573 ABC-type phosphate transport system, permease component 97 49 Op 3 41/0.000 + CDS 97884 - 98768 903 ## COG0581 ABC-type phosphate transport system, permease component 98 49 Op 4 7/0.000 + CDS 98785 - 99594 306 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 99 49 Op 5 32/0.000 + CDS 99587 - 100363 284 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 100 49 Op 6 . + CDS 100378 - 101055 774 ## COG0704 Phosphate uptake regulator + Term 101105 - 101142 -0.7 + Prom 101072 - 101131 4.7 101 50 Op 1 4/0.059 + CDS 101265 - 102866 2059 ## COG3595 Uncharacterized conserved protein + Term 102874 - 102929 8.5 102 50 Op 2 . + CDS 102941 - 103264 431 ## COG1983 Putative stress-responsive transcriptional regulator 103 50 Op 3 . + CDS 103264 - 103620 263 ## EF1751 hypothetical protein + Term 103626 - 103674 11.1 104 51 Tu 1 . - CDS 103656 - 104618 827 ## COG0322 Nuclease subunit of the excinuclease complex - Prom 104645 - 104704 6.3 + Prom 104682 - 104741 8.5 105 52 Op 1 10/0.000 + CDS 104828 - 105763 1086 ## COG1493 Serine kinase of the HPr protein, regulates carbohydrate metabolism 106 52 Op 2 . + CDS 105778 - 106614 775 ## COG0682 Prolipoprotein diacylglyceryltransferase 107 52 Op 3 3/0.059 + CDS 106683 - 107705 1420 ## COG0240 Glycerol-3-phosphate dehydrogenase 108 52 Op 4 . + CDS 107717 - 108613 1270 ## COG1210 UDP-glucose pyrophosphorylase + Term 108624 - 108672 3.4 + Prom 108701 - 108760 7.2 109 53 Op 1 3/0.059 + CDS 108791 - 109222 610 ## COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain 110 53 Op 2 . + CDS 109238 - 109825 1135 ## COG4980 Gas vesicle protein + Term 109896 - 109948 17.4 - Term 109880 - 109937 17.2 111 54 Tu 1 . - CDS 109946 - 111049 1304 ## COG0006 Xaa-Pro aminopeptidase - Prom 111240 - 111299 7.5 + Prom 111141 - 111200 5.8 112 55 Tu 1 . + CDS 111264 - 112265 1309 ## COG1609 Transcriptional regulators + Term 112277 - 112324 13.5 - Term 112319 - 112359 8.4 113 56 Tu 1 . - CDS 112370 - 114754 2488 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) - Prom 114783 - 114842 8.3 114 57 Tu 1 . + CDS 114966 - 116228 727 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 + Prom 116327 - 116386 6.1 115 58 Op 1 . + CDS 116409 - 117071 641 ## EF1738 hypothetical protein 116 58 Op 2 . + CDS 117071 - 117538 401 ## EF1737 hypothetical protein 117 58 Op 3 . + CDS 117549 - 118442 1242 ## COG0648 Endonuclease IV + Term 118452 - 118497 7.2 + Prom 118541 - 118600 8.0 118 59 Tu 1 . + CDS 118636 - 118854 342 ## COG3763 Uncharacterized protein conserved in bacteria + Term 118883 - 118931 7.0 + Prom 118893 - 118952 3.6 119 60 Op 1 35/0.000 + CDS 119052 - 120803 209 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 120 60 Op 2 . + CDS 120803 - 122587 193 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 + Term 122623 - 122671 7.0 + Prom 122651 - 122710 5.3 121 61 Op 1 . + CDS 122743 - 123504 576 ## COG0710 3-dehydroquinate dehydratase 122 61 Op 2 . + CDS 123522 - 124016 631 ## COG2606 Uncharacterized conserved protein 123 62 Tu 1 . + CDS 124081 - 124164 77 ## + Term 124170 - 124212 -0.7 124 63 Tu 1 . - CDS 124146 - 124553 466 ## COG0328 Ribonuclease HI - Prom 124661 - 124720 7.2 + Prom 124549 - 124608 6.2 125 64 Tu 1 . + CDS 124654 - 125115 327 ## EF1727 EbsA protein - Term 125088 - 125142 9.2 126 65 Tu 1 . - CDS 125220 - 125426 277 ## COG1278 Cold shock proteins - Prom 125458 - 125517 6.3 + Prom 125499 - 125558 6.3 127 66 Tu 1 . + CDS 125605 - 127275 2263 ## COG2759 Formyltetrahydrofolate synthetase + Prom 127289 - 127348 4.4 128 67 Op 1 . + CDS 127380 - 128084 770 ## EF1724 CBS domain-containing protein 129 67 Op 2 15/0.000 + CDS 128090 - 128566 527 ## COG0597 Lipoprotein signal peptidase 130 67 Op 3 4/0.059 + CDS 128553 - 129458 350 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit + Term 129639 - 129680 7.1 131 68 Op 1 7/0.000 + CDS 129800 - 130336 882 ## COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase 132 68 Op 2 6/0.059 + CDS 130353 - 131633 1069 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 133 68 Op 3 15/0.000 + CDS 131647 - 132573 1177 ## COG0540 Aspartate carbamoyltransferase, catalytic chain 134 68 Op 4 7/0.000 + CDS 132582 - 133865 1506 ## COG0044 Dihydroorotase and related cyclic amidohydrolases 135 68 Op 5 24/0.000 + CDS 133868 - 134947 1057 ## COG0505 Carbamoylphosphate synthase small subunit 136 68 Op 6 3/0.059 + CDS 134947 - 138129 3544 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) + Term 138137 - 138184 4.2 137 69 Op 1 13/0.000 + CDS 138237 - 139028 849 ## COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases 138 69 Op 2 5/0.059 + CDS 139025 - 139963 1035 ## COG0167 Dihydroorotate dehydrogenase 139 69 Op 3 9/0.000 + CDS 139953 - 140666 882 ## COG0284 Orotidine-5'-phosphate decarboxylase 140 69 Op 4 . + CDS 140668 - 141300 829 ## COG0461 Orotate phosphoribosyltransferase + Term 141305 - 141356 -0.6 + Prom 141391 - 141450 5.2 141 70 Op 1 . + CDS 141498 - 142196 536 ## COG3338 Carbonic anhydrase 142 70 Op 2 . + CDS 142215 - 143144 943 ## COG0583 Transcriptional regulator Predicted protein(s) >gi|284795517|gb|ADDQ01000032.1| GENE 1 262 - 522 139 86 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227519043|ref|ZP_03949092.1| ## NR: gi|227519043|ref|ZP_03949092.1| hypothetical protein HMPREF0348_2026 [Enterococcus faecalis TX0104] # 1 86 1 86 86 84 100.0 2e-15 MKKIDLINMIGMLIGILVNIVIFTDWLGVLFSNLIPILIIGICGIILSILELFESRNTMN RIFACIILIVNLLPMVYFTFLYFALG >gi|284795517|gb|ADDQ01000032.1| GENE 2 796 - 2088 1224 430 aa, chain + ## HITS:1 COG:RSc0252 KEGG:ns NR:ns ## COG: RSc0252 COG3328 # Protein_GI_number: 17544971 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Ralstonia solanacearum # 24 399 31 405 416 281 39.0 2e-75 MARKKRNPDAEKLAESILNAYQPESVDDMQDALKDVFGPLFEKMLQGELNNHLGYDAHSK EPKEHDNRRNGYGTKTLKTSFGEVAIDVPRDREASFEPELIPKRKRDVSDIEGKVLSMYA RGMSQRDIAATVEAIYGFDISHEMISDITDAVLPELEEWQARPLAKCYAFLFVDCMYVTL RENYEAKEYAVYTILGYDLKGNKEILGLWLNQTESKNRWMQVFDELKARGVEDVFFISMD GVSGLEEGAKAIFPSVIVQRCIVHLVRNALRYIPSKDYKEVCRDMKKFYGASSLNAAHAA FGSFQNRWSHYSGAVDVWKRNFAHVEQLFDYGSAIRKIMYTTNAVESVHSSFRKVTKKGA FSNENALLKLLYLRTKELHAKWSGGRIQNWAMVLKQLMINETFSSRMKSMRFTFRNNGRF IQLCVRSKFI >gi|284795517|gb|ADDQ01000032.1| GENE 3 2182 - 2346 130 54 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227519041|ref|ZP_03949090.1| ## NR: gi|227519041|ref|ZP_03949090.1| hypothetical protein HMPREF0348_2024 [Enterococcus faecalis TX0104] # 1 54 1 54 54 82 100.0 8e-15 MKYYTDKKEPWTLIWLGIQGDKTSEFLKETTLLNTHTVSLTKNINKKHTIENSM >gi|284795517|gb|ADDQ01000032.1| GENE 4 2343 - 2567 111 74 aa, chain - ## HITS:1 COG:no KEGG:EF1853 NR:ns ## KEGG: EF1853 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 74 1 74 74 131 100.0 6e-30 MEDFWYHNKSVSAPISLSQCGYESYHPNSSIRNYIVQQKWIFHYVLSGKGFLEVEAQHFE LIEHDIFFFFKVKK >gi|284795517|gb|ADDQ01000032.1| GENE 5 2705 - 3967 847 420 aa, chain + ## HITS:1 COG:lin2856 KEGG:ns NR:ns ## COG: lin2856 COG1455 # Protein_GI_number: 16801916 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Listeria innocua # 9 392 8 388 454 300 42.0 3e-81 MSEKIMNTIQNKVLPIATKIGNQRFLVALRDSFMGTMPVIMTGSVAILLNAFLVDFPMQF GYEKITDYFQWLVDINNLISKGSISIVSLLFIYCLGVNIAKIYKTDTLSSGLVALSSFII SISNSMTSTYNLSNNNNIDLTTLFTDVEGITVTGNSLNVTISGLLPGTQINSNGYFTAII IGFLSSIIFCKLMNKNWTIKLPDTVPPAIAKPFLSIIPALVSLYIIAILTFLLNRITGKI LTDVIYEILQRPMLGLSQSFFVVILVAFLVQFFWFFGIHGGNVMAPIMEGVFGVALLVNL EAYQNNETIPYVWTSVSYGSFVWYATLGLLIAIFWVSKNSHYKEVAKLGIMPVLFNIGEP VMYGLPTVLNPILFIPFLLCPAVMSSVAYLVTDFKLGFSSNTKCNLGNTTGLIWILFDRI >gi|284795517|gb|ADDQ01000032.1| GENE 6 4139 - 5974 1526 611 aa, chain + ## HITS:1 COG:SP0060 KEGG:ns NR:ns ## COG: SP0060 COG1874 # Protein_GI_number: 15900005 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase # Organism: Streptococcus pneumoniae TIGR4 # 1 593 1 590 595 631 52.0 1e-180 MQTFEIKEEFLVDGKPTKLISGAIHYFRMTPAQWEDSLYNLKALGANTIETYIPWNLHEP VEGVYDFEGMKDIVAFVSLAQELGLMVILRPSVYICAEWEFGGLPAWLLKEHVRLRSTDP RFIAKVRTYFSVLLPKLVPLQVTHGGPVIMMQVENEYGSYGMEKEYLRQTKQVMEEFGID VPLFTSDGAWEEVLDVGTLIEEDVFVTGNFGSHSKENATVMKAFMAKHDKKWPIMCMEYW DGWFNRWGEPIIKRDGQDLANEVKDMLALGSLNLYMFHGGTNFGFYNGCSARGVLDLPQV TSYDYDALLTEAGEPTEKYFHVQRAIKEVCPEVWQAEPRRKTFGSLGTFPVQNSVSLLAV KDQMMTAQETMYPITMEEAESGYGYMLYSVNLKNYHHENKLKVVEASDRLHLFADGSLQT IQYQENLREEVMIKGTPEKEWIELDVLVENLGRVNYGFKLNGPTQVKGIRGGIMQDIHFH QGYRQYALTLSADQLKKIDYTAGKNPAQPSFYQAEFTLTDLADTFIDCRSYGKGVVIVNG INLGRYWQRGPIHSLYCPKEFLKKGTNEIVIFETEGIEINELIFCGQPIVKKLLTNDFSE IGSNIHNHIDS >gi|284795517|gb|ADDQ01000032.1| GENE 7 6542 - 6943 328 133 aa, chain + ## HITS:1 COG:no KEGG:EF1850 NR:ns ## KEGG: EF1850 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 133 1 133 133 243 100.0 2e-63 MQQNNNEISTQHQFDAYCKKVLRNEAKSIRKRNDKIKENEEPLNDLNEGKYSQTHLDEQD VYFLFGMEILISDQKLSAAIDQLSDTRKKIVLLYYFAGFNDTEIGKIFNMSTSGIWYQRT KAVEQLKMEYGLW >gi|284795517|gb|ADDQ01000032.1| GENE 8 6937 - 7182 65 81 aa, chain + ## HITS:1 COG:no KEGG:EF1849 NR:ns ## KEGG: EF1849 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 81 1 81 81 145 100.0 3e-34 MVDKQRNQHYPLVPISIILSALKEDPISIKMILKHYHGYITKLCLKNGFNEVGQFITYVD EYMLRQLEIKLIEAILKFKVN >gi|284795517|gb|ADDQ01000032.1| GENE 9 7531 - 7842 173 103 aa, chain + ## HITS:1 COG:no KEGG:EF1848 NR:ns ## KEGG: EF1848 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 12 103 12 103 103 177 100.0 1e-43 MSKNNNKSNSSELEKYLFHPEKIEDSNNKMKRINQLPLVLTNKDLKEQFQISDSTLNRLI KLGDFPSCWFGIRGHYLRDDILEWVKKGNEEYFCDQFRLLRLL >gi|284795517|gb|ADDQ01000032.1| GENE 10 7945 - 9123 766 392 aa, chain + ## HITS:1 COG:SA1835 KEGG:ns NR:ns ## COG: SA1835 COG0582 # Protein_GI_number: 15927603 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Staphylococcus aureus N315 # 27 390 30 381 390 112 28.0 1e-24 MENMSRFKKHITATGKITWYFQAFRTTRRGFNSKREAQLAYLEMEKQHRNKQKRLASNDK FSVVSQKWFEYYRSLNEQKVATYDKREEQVKILNRWIGGKKLSSLSSEELQKFLFILKEK GIDGVNVGYAKNSLQSLVQVLNMVFNYCKKKNLINENPMKFVKMPKYQLSLKDLKESVNS LEDKFLTVDELRAFLNYGIVYEELPMSVLFHVLFYTGCRVSEALALQPQDIDFERNEILF YKQTAVKGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRNSNFVVDETYL FVYLDPGKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMASLVAEYCSWDVLKDR LGHTDSTTSKIYRHLTSTEKLKPLTAFNSLEG >gi|284795517|gb|ADDQ01000032.1| GENE 11 9849 - 10016 122 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227519032|ref|ZP_03949081.1| ## NR: gi|227519032|ref|ZP_03949081.1| hypothetical protein HMPREF0348_2015 [Enterococcus faecalis TX0104] # 1 55 1 55 55 82 100.0 7e-15 MFAIVLRVVILLITVKIVDYFANTPEVQIQRKLPEFEKVPPYDPRDNSFLIQIIL >gi|284795517|gb|ADDQ01000032.1| GENE 12 10182 - 10265 133 27 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEATLPMVQARRKELSILMNNSYSNFM >gi|284795517|gb|ADDQ01000032.1| GENE 13 10281 - 10697 375 138 aa, chain + ## HITS:1 COG:no KEGG:EF1844 NR:ns ## KEGG: EF1844 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 138 1 138 138 213 100.0 2e-54 MKKIGYFSCIIFFMFLVGCSNNKKENGNLLNASSFPLILTTIIEKEEDLTKGSIFFNKDK TMTLEKEYLVNPNNEDTKKTSRTEKKVYKNIKIQENKESYEIIGQLDKKTKKIEFKKVDE GKRISDAEGNVYGDFGGK >gi|284795517|gb|ADDQ01000032.1| GENE 14 10871 - 11776 642 301 aa, chain - ## HITS:1 COG:CAC0090 KEGG:ns NR:ns ## COG: CAC0090 COG0726 # Protein_GI_number: 15893386 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Clostridium acetobutylicum # 1 300 1 292 293 148 33.0 2e-35 MRHKKRKFKINGYVLFSALILIVLVFIQTFLLTQPKITSKNDDTTQTSTKNSTAKKDSPT KLEKESTHMTISSKKYAYSADKIRKYITGEEPYKGEKLVFLTFDDGVNNQITPQVLDTLK KYNVHATFFLVGNTLTSENQKIVKREVAEGHSIGFHSSTHDYATLYPNGIVNTKEIQAEI ATMENSLKKILGETFQTTLWRYPGGHMSWGGTEKSDELFKQLGIHWIDWNAMVGDAEPLD RQPTTVAEMLAFHQHSLEVYPDYNIRVVLMHDSVDKELTKQALPQLIEFYQANGYQFGVL Y >gi|284795517|gb|ADDQ01000032.1| GENE 15 12000 - 12578 442 192 aa, chain + ## HITS:1 COG:L132126 KEGG:ns NR:ns ## COG: L132126 COG1713 # Protein_GI_number: 15673861 # Func_class: H Coenzyme transport and metabolism # Function: Predicted HD superfamily hydrolase involved in NAD metabolism # Organism: Lactococcus lactis # 5 187 10 192 197 167 45.0 1e-41 MDHQQVLKNEIKQYLVSKNCEKTYYHCMEVGEYAYQLGEKYLTSPEKVSIAGYLHDISAV YPNNQRISVAQKYGIELNETEMAFPMIIHQKISKSIAKMDFGIEDNEILSAIECHTTLKK NYSDIDLVLFVADKIKWDQEGKPPYLDGLLQALNCSLENAAYFYIDYILKHDIKVVHPWL WDAYNQLNLIIK >gi|284795517|gb|ADDQ01000032.1| GENE 16 12669 - 12800 68 43 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKIILIGLLLSILSGCSSNKSGDSTASKSSKPTATSEMKAQQ >gi|284795517|gb|ADDQ01000032.1| GENE 17 12814 - 13659 746 281 aa, chain + ## HITS:1 COG:no KEGG:LCABL_21280 NR:ns ## KEGG: LCABL_21280 # Name: yjdB # Def: hypothetical protein # Organism: L.casei_BL23 # Pathway: not_defined # 20 160 66 211 214 112 43.0 1e-23 MSTESKSSTTQSNSSASTKTENQLWSVQKKAQLQQFMADWGQRMNQTYKEYIPGNLINFN GVQAPDGLVGNVTMQPAIGQHPIYLEWSENGQVKDGYALVAVYSDAETQPEMQKHLYLFT IVNNQPLVLVTMQNQGDPYGYLYFGATDNAELRAGFEKIVGAPSITKEQIPNISVNPWSS KEEAIDFYEGMYKNTANEISTQIDWHNYQRANWREVETKGDTLTLHFANAGGAGGSYTQF TKVGTNTVVVSFDGNAAYPDNPSSVLLVQNSDYKVLRTLNQ >gi|284795517|gb|ADDQ01000032.1| GENE 18 13995 - 14747 697 250 aa, chain + ## HITS:1 COG:SA1998 KEGG:ns NR:ns ## COG: SA1998 COG1349 # Protein_GI_number: 15927776 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Staphylococcus aureus N315 # 1 249 1 250 251 224 50.0 2e-58 MLKEERLNAIVSLVDQKGAIKVTEIMERLNVSDMTVRRDLTELEAAGRLKRVHGGASSLN TYRPHELSHADKQIINSVEKKEIVQKALSLIHEEETIFLGPGTTIELLAEAMEFKHLRVV TNCLPVFETLSKKKNALTIYLVGGEMRLLTKSFFGEIANKALEEMHFHKAFFSCNALKDN KIMTATIEEGQTQAIALDNSIEKYLLMDTSKVEKQDFYSFYQLEEVTAVVTNKDKFDTSK VLEKVVRVIY >gi|284795517|gb|ADDQ01000032.1| GENE 19 14788 - 16191 1362 467 aa, chain - ## HITS:1 COG:CAC2956 KEGG:ns NR:ns ## COG: CAC2956 COG3775 # Protein_GI_number: 15896209 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIC component # Organism: Clostridium acetobutylicum # 1 464 1 465 470 585 69.0 1e-167 MNTIIDLANTIFKPLIDLGAAPLMTIVLTLIALCFKVKPTRALEGGLKLGIALTGISAII GILTTAFSDAMASFVERTGISLNITDVGWAPLATITWGSPYTLYFLLIMVIVNVIMLILN KTNTLDVDIFDIWHLSIVGLFAIFCGANLIIATILVIFIGVLKIINSDLMKPTFNDLLNA PDTNPMTTTHMNYMMNPIIMVFDKIFDKLFPWLDKYDFDAAKLNSKIGFWGSKFAIGIYL GIFVGLLAGQTPTQIFSLSFTAAVCLELFSLIGTWFIAAVEPLSQGITDFASNKLKGRTL NIGLDWPFLAGRAEIWAAANVLAPIMLLEAIVLPGNKLLPLGGIIAMGVTPALLVVTRGK LIRMIIIGAIELPLFLWSGTLIAPFVTETAKKVGAFPAGLNNNTLISHTTMEGPMEKFLG YLVGNASQGQLEFILYACLALVAYLLIFIWYAKQMKKRNIIYAQKAQ >gi|284795517|gb|ADDQ01000032.1| GENE 20 16286 - 16588 428 100 aa, chain - ## HITS:1 COG:SPy1710 KEGG:ns NR:ns ## COG: SPy1710 COG3414 # Protein_GI_number: 15675563 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIB component # Organism: Streptococcus pyogenes M1 GAS # 1 95 1 95 101 139 69.0 1e-33 MIKILAACGAGVNSSHQIKSALETELSKRGYQVSCDAVMIKDINQEMLSHYDIFAQIAKT DLGFPITIPVVDAGAILYRIPAMAEPVYQQMESIIHSLNK >gi|284795517|gb|ADDQ01000032.1| GENE 21 16590 - 17084 434 164 aa, chain - ## HITS:1 COG:CAC2958 KEGG:ns NR:ns ## COG: CAC2958 COG1762 # Protein_GI_number: 15896211 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Clostridium acetobutylicum # 5 156 6 155 164 110 38.0 1e-24 MVIKTSIFSLDTTYISNKKTQEEVFEEVYLDLLKKKLVTPDFLTNLLEREHNYPTGLSLT PIDPALPNIAIPHTESTFVRTTRIIPIKLKQSLSFHNMIIPDETLSVSFLFMILNENGIE QTGLLATIMDFINTTDRSSLLAFFQCEDKEEVYRFLQKNFKGEI >gi|284795517|gb|ADDQ01000032.1| GENE 22 17307 - 17735 699 142 aa, chain + ## HITS:1 COG:SA1997 KEGG:ns NR:ns ## COG: SA1997 COG0698 # Protein_GI_number: 15927775 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Staphylococcus aureus N315 # 1 141 1 141 142 159 60.0 2e-39 MRVILGSDLDGIKLKAEMKQYLLQEKVEVIDKSESASEDFIEATLAVAHEVLKDTESLGI VFDGYGAGSFMTAAKIKGMIVAELSDERSAYMAREHNNARMITVGAKIVGTELAKNIIKE FLTGHYAGGRHQIRVDMLNKMA >gi|284795517|gb|ADDQ01000032.1| GENE 23 17761 - 18276 540 171 aa, chain + ## HITS:1 COG:SP1192 KEGG:ns NR:ns ## COG: SP1192 COG0698 # Protein_GI_number: 15901057 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Streptococcus pneumoniae TIGR4 # 1 171 1 171 171 277 77.0 7e-75 MKIAIGCDHIVTDTKIAVSDFLKAKGYEILDVGTYDFTRTHYPIFGKKVGEAVMSNQADL GICICGTGVGITNAVNKVPGIRSALVRDMTTALYAKEELNANVIGFGGKITGEFLICDIA AAFIEAHYHPTEDNEQLIEKINQVEKQHPEQQDAHFFDEFLDKWQRGVYHD >gi|284795517|gb|ADDQ01000032.1| GENE 24 18522 - 18809 263 95 aa, chain - ## HITS:1 COG:no KEGG:EF1833 NR:ns ## KEGG: EF1833 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 81 1 81 95 85 100.0 4e-16 MSAKEKTMKYGLVGLFLGILLLAHLDLLAENLSYLLLGLLLLLVAYLILVKKFYFFSNLI PKNTTDINLGKKYGTASGIGSLVIGIILIILGLFL >gi|284795517|gb|ADDQ01000032.1| GENE 25 19390 - 19821 463 143 aa, chain + ## HITS:1 COG:CAC1457 KEGG:ns NR:ns ## COG: CAC1457 COG2893 # Protein_GI_number: 15894736 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Clostridium acetobutylicum # 1 143 1 142 142 110 40.0 8e-25 MTYLVLVSHGDFARGLKNSLGMFAGDEIEKVRVFGLQPGESTDNFGKRFLCEVEKLPQET RLIVLADIVGGSPLATICKVLDKQKMLENSLIVGGVNFPMALNALLLKETSELSDLKKMI VADACHGIRELTITEGDVTEEDI >gi|284795517|gb|ADDQ01000032.1| GENE 26 19836 - 20333 489 165 aa, chain + ## HITS:1 COG:CAC1458 KEGG:ns NR:ns ## COG: CAC1458 COG3444 # Protein_GI_number: 15894737 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Clostridium acetobutylicum # 1 165 1 163 164 193 58.0 1e-49 MSISFVRIDDRMIHGLITLRWTKEMPCDGIIAVNDKAASNPILKEAYKAAAQDKKTFIWT MAHFFDVKDKVLASKSKYFLITKSPLDMKKILVDWHFVPSEVKMINVGPGNDREGTIKLG DNQSFTAEEAAAFEEIEKAGYKVDFALLPDQRIGSWAHFKAKFGY >gi|284795517|gb|ADDQ01000032.1| GENE 27 20367 - 21218 871 283 aa, chain + ## HITS:1 COG:CAC1459 KEGG:ns NR:ns ## COG: CAC1459 COG3715 # Protein_GI_number: 15894738 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Clostridium acetobutylicum # 1 283 1 281 281 281 57.0 7e-76 MTINWIQAAILGLFACLCSNSCMAGQAVGNYTIGRPLVGGLVCGIILGDLKLGIACGVAM QLVYIALVTPGGTVSADVRAISYIGIPLAMVAISTKGLDPLGGSAADLAKSVGTLVGTIG TVLFYSVAALNLVWQSFGWKDIKKGKLDHLYAINFGWPWISHLLFSFLPTVILTYFGATA VTAMRDALPMDGLAMKTLFTVGGMLPCVGIAILLRQIVNKNIDFVPFFVGFTLAASLKLN LVSITIIALLFAVIFYKIALIKNNTKLVDSTGSLTNDDEEEDI >gi|284795517|gb|ADDQ01000032.1| GENE 28 21220 - 22062 936 280 aa, chain + ## HITS:1 COG:CAC1460 KEGG:ns NR:ns ## COG: CAC1460 COG3716 # Protein_GI_number: 15894739 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Clostridium acetobutylicum # 4 280 1 277 277 320 56.0 1e-87 MEELKANKLDQKTLKHSFHLWFWGALTCFSQQHMQTFGYLSSMLPIIKKLYPKHEDQVKA IQAYTAFFNTNPMLGTVIVGVTASMEEARASKNEIDGETINDMRAGLMGPIAGIGDSLVD GTLIPILLGISLGMSTGGSPIGAIFYIIVWTLISYFGQRFLYFRGYHFGDKAVSFLVGKE GAAVRVAIGVIGSMVVGGVLASWVNVTTSLKLIGADGKVFLKLQDKIDSIYPGLLTILVT LFCWWLMSKKHVSAIWTMLILVVISLVGVLLGVFNPGLTY >gi|284795517|gb|ADDQ01000032.1| GENE 29 22266 - 22976 662 236 aa, chain - ## HITS:1 COG:L0015 KEGG:ns NR:ns ## COG: L0015 COG0580 # Protein_GI_number: 15673226 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Lactococcus lactis # 4 236 7 242 245 148 36.0 7e-36 MFHHILSEFMGTALMIVFGVGVHCDDVLKRTKYAGSGHMFAITTWAFGISVVLFVFGGVC INPAMALAQAILGMIPWSYFIPYVIAEMLGGICGAVIVYIMYADHFKLSADSVDPIAIRN IFSTNPNQRNLPRNYFVETFATFIFLTSILAIAHSYETQLPIAVGLLVWAIGMGLGGTTG FAMNQARDLGPRIAYQLLPIKNKTNNDWQYGLIVPGTAPFLGAIFATLFVKFFLKF >gi|284795517|gb|ADDQ01000032.1| GENE 30 22991 - 23971 804 326 aa, chain - ## HITS:1 COG:CAC0774 KEGG:ns NR:ns ## COG: CAC0774 COG1641 # Protein_GI_number: 15894061 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 4 317 108 414 420 200 38.0 3e-51 MNDRFVCSLIEKSDLSNFVKKHSKNVFYDIAKAEAAVHQQTIDTIHFHEVGAIDSIVDIV GFFILWEQLEIEQVYSTPITDGSGTITIAHGVMPIPVPAVMELRKETNLIIQQDFEIKTE LVTPTGLAIFKELSPLFVAPEQRLIEKIGYGFGKRETGKFNALRGSIFTETHSKKKRTEH HDQVLKIETNIDNQTPEQLGYVMDLLLEHGALDVFFTPIHMKKNRSAILLTVLTTTEEKE YFTELLFKHTSTIGMRFQTMERSVMDRSFKILETPFGKVHIKKNHYHGLLKESIEYQDCE RIAKQYNFTIEEVYRLVQTLNNKTID >gi|284795517|gb|ADDQ01000032.1| GENE 31 24486 - 25502 1377 338 aa, chain + ## HITS:1 COG:SA0562 KEGG:ns NR:ns ## COG: SA0562 COG1064 # Protein_GI_number: 15926283 # Func_class: R General function prediction only # Function: Zn-dependent alcohol dehydrogenases # Organism: Staphylococcus aureus N315 # 3 336 2 336 336 435 68.0 1e-122 MYKAIVAAKGKTTKIVEKESRPLKDNEARLKMEVCGVCHTDLHVKNADFGDVSGCTLGHE GIGIVTEVGKDVTSLKIGDRASVAWFYEGCGHCEYCTSGRETLCRSVKNAGYTVDGAMAE ECIVTDGYAVKVPENLASEPASSITCAGVTTYKAIKESGIRPGQWLMISGLGGLGNLALQ YAKHVFNAKVVAVDVNDNQLAFAKEMGADLLINPVKDPDFAAQLQKEIGGVHAAVVTAVA KSAFNGAVDAVRAGGTVVAVGLPVETMDLSIPRLVLDGIHVVGSLVGTRQDLREAFQFGA EGKVVPVCQTRQPEEINAIFEEMEQGKIRGRMVIDFRS >gi|284795517|gb|ADDQ01000032.1| GENE 32 25559 - 25945 215 128 aa, chain + ## HITS:1 COG:no KEGG:EF1825 NR:ns ## KEGG: EF1825 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 128 1 128 128 209 100.0 2e-53 MFANLTLRERRLLKQAQVGATISFILLFVPILTIILLHTSDLLAKWLGIVGVIMVLPLLY FAWQILKIAYKDQKDNPTPPLWVPKVYGIGLSINPYHRFGKLIFILLAVLIVGIIISLLF TPASQINH >gi|284795517|gb|ADDQ01000032.1| GENE 33 26286 - 26369 80 27 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFSFNILLKGCVYEGVTETDFLTVSVN >gi|284795517|gb|ADDQ01000032.1| GENE 34 26476 - 32076 6406 1866 aa, chain + ## HITS:1 COG:SSO3022 KEGG:ns NR:ns ## COG: SSO3022 COG1501 # Protein_GI_number: 15899728 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-glucosidases, family 31 of glycosyl hydrolases # Organism: Sulfolobus solfataricus # 486 754 405 667 731 157 34.0 2e-37 MNKEYQGKKIYGKKHWLTFLLVSSSVLAFHSFVTMDSQVVDAQEQTAKEDVADSATSVGA IVSIEKAEKNFVITYASGKKAQISILNDHLFRYHLDPTGKFEEYPTPNDPKHVAKITAKT MADYGTQTFEQTNVTDSGNQFILENNGLKIMFEKESALMKVLDKKKNQVILEETAPLSFK NDKATQTLKQSSQENYFGGGTQNGRFTHKGTAIQIVNTNNWVDGGVASPNPFYWSTAGYG VVRNTWKPGNYDFGSHDPQKTTTTHEGTDFDAFYFFNDSSAGILKDYYELTGKPALMPEY GFYEAHLNAYNRDYWVKVAEGTAGAVKFEDGNFYKEYQPGDLGNLNGTLESLNGEKENYQ FSARAVIDRYKKNDMPLGWFLPNDGYGAGYGQTDSLDGDVQNLKEFTEYAQANGVEVGLW TQSNLHPADPKNPKKGERDIAKEVSVAGVKALKTDVAWVGYGYSFGLNGVEDAANVFVKE TDGAVRPMIVSLDGWAGTQRHAGIWTGDQTGGQWEYIRFHIPTYIGTSLSGQPNVGSDMD GIFGGKNKEINIRDFQWKTFTPVQLNMDGWGSNPKTPFAFDQEATDLNRAYLKLKSMMMP YNYSIAKESVDGLPMVRAMALEFPNEGTAYTKDSQYQYMWGPNLLVAPIYNGNQDEAGNS IRDGIYLPDEKQVWVDLFTGEKYQGGRVLNGVKTPLWKVPVFVKDGSIIPMTNPNNNPKE IQRDQRSFLIYPNGTTSFNMYEDDGISTSYEAGQSATTKINSQGPKSNEKGDLTVTIEPT KGSYKDFVDERSTTLDLLASEAPESVTAMVGGTEVTLKQAANKEEFLAGTNLYYFDKEFQ VNQYLSEASGEKLNQSALSVKLAKQSVTAKDVQITVKGFINKGTVDGGNTTVDDQLTIPA NVAINEEKTTPSSLTLQWDQVTEATSYEVERDGTVFGNIQTNTATFDGFSFLSEHTFRVR AVGKNGVSEWSEPIKGKTQDDPYKETINQVKATSNLPEQPGAELKKLTDKDLSTGWHTNW STGIANPSDGNFLSLKFDLGAEYQMDKIEYLPRDNAGNGNILQLQYRTSKDGANWTEFSE PINWKQDALTKTIETKDQAYRFVEMKVLKSVGNFGSGREMLFYKQPGTEGILHGDITNDG TIDENDAMSYRNYTGLESVDSDFNGYVEKGDLNKNGVIDAYDISYVLRQLDGGIEIPDVE EIAGGLSLAVVNENGKDTYLPGDTLTFILKGQDLKNINALSTKMSFDSSKFELVGQPATT NNTQQMENYSKYRKHSNDVENLYLVLSNQGNKQLLNGSMDLVTFKVKVKETTRVKRATTV EQPLQFDMSQGLLVGQGFQQATLSDFSVTVKPTELVDKELLQALITLNQARVEKEYTPET WAIFKPILDEAVAVLANEQATQTDVSAAAENLEKAASQLEKMPDVANKADLEKAIQEGLA KKPSDGQEFTEETKKVLEESLAAAQKVFAQEKVTQEEIDQATKTLREAIAQLKEQPVAVD KETLKEQIAQARGRKPEEGYQFTKETEKQLQEAIQAAEAIVAKETATKEEVSEALNALET AMAQLKEVPLVNKDQLQEVVKRAQQVTPSEGHQFTASSLQELQKALLAAKNTLKNPAANQ KMIDEAVAELTSAIDGLQEEVLVTDKKALEAMIAKAKAIKPSAGKEFTSESKARLTEAID QAEGILADKNARQEQIDIAEKNVKTALDSLEEQVLQTDKTKLKELLQKAETLKPKAGKQF TKASQEALAEAIKQAKALVEDPNATQEAVDKCLSILSQAIEAMAEEPISSNSTGNNGNHS TVSGTGGVTSQGKGTATGGTTTKTTTSGTLPKANEVVSPIWSISGFLLIVSIGLGKLFFK NKKEQN >gi|284795517|gb|ADDQ01000032.1| GENE 35 32158 - 34116 1691 652 aa, chain + ## HITS:1 COG:SA2437_1 KEGG:ns NR:ns ## COG: SA2437_1 COG1705 # Protein_GI_number: 15928230 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Staphylococcus aureus N315 # 338 507 310 478 502 156 52.0 1e-37 MKRKKIKNQLLVLTSILVLLSLEVAPVVTLAAELPSSSLQTALSSETTITSEEKVTETTE TTVATSTTSTSSSSSESSSSTDTTTESTSQSTTETTTTNTSSETKKEPTEPTVSSEITQP VEQSQPPQVPVTKQEPEEPIQVPEANNNFVEENQAVSLNPSLKVDEIASSNLKGYELPLL SSFGEKKRAVVVAEALRHVGKTKKEFNLTEQALTSSFLAQKIYQQLFKIDIGSTPQEQMT FGKVRSIEEAEPGDLIFWQTAEGKTLQNGVYLGQGKYLIAAAESDSKEKPEVIAQLENIY TAKQQPDSKEEKRLVVTNPFKEFILTEYGKEVLATYGASFEMQKSEQTTAFIKKIGETAR ELGEKYDVFASVMIAQAILESGSGESQLAKEPYYNLFGVKGSFQGNSVSFSTKEADQRGQ LYTISAGFRDYGGYNDSLQDYVQLLRQGIDGNQDFYKPAWRSEAKNYLQATRFLTGKYAT DKQYDNKLNSLIAVYNLTQFDLPKTVDGLIIQSKNKLSEAEQQQMHFPVYDGINYNRSGS YPVGQCTWYVYNRFKQLGTSVDEFMGNGSDWGRKGRALGYQVSSLPKAGRAISFQPGVAG ADNQYGHVAFVEAVTSDGIIISESNVINDQTISYRVLPNVIAYSSGVTYIGA >gi|284795517|gb|ADDQ01000032.1| GENE 36 34535 - 35266 555 243 aa, chain + ## HITS:1 COG:SPy0245 KEGG:ns NR:ns ## COG: SPy0245 COG3279 # Protein_GI_number: 15674427 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Streptococcus pyogenes M1 GAS # 1 241 2 239 246 119 30.0 5e-27 MAIYILEDQIIQAKALEVLLTNILHSRNIYNETIHLFSRSDELLQVAHQDAQLNIFFLDI QMNNHIQAGFEVAKEIRKTDSESLIVFISTHTELVLTSYKYMVSALQFIQKNVDFLDFQK EVETCVDAYIQQKENIKTKSEYIIINLKASSIKMDINDIYFFQTEYDHRVSMVGKNFKRE FYGTLSKIEQLHPDLIRVHQSIIINKKYASKLNYKTHLLTMRDGTEVPVSRRYYTQVKAL FLT >gi|284795517|gb|ADDQ01000032.1| GENE 37 35355 - 36083 455 242 aa, chain + ## HITS:1 COG:no KEGG:EF1821 NR:ns ## KEGG: EF1821 # Name: agrBfs # Def: agrBfs protein # Organism: E.faecalis # Pathway: Two-component system [PATH:efa02020] # 1 242 1 242 242 445 100.0 1e-124 MLIDWILKNIMDMDQEDQSGKTQWTKYYLTVYFSGLFNLLMILILSVLFGTLSETFIVYV VLIFLRPVAGGWHAKTKWLCRLESIVIYVAIPFVLKNSSVSLPFIYKILLMCLLVVLFYW YAPQGTAIEPVQPSDLNVLKKQSLIRVCLLILCSLFVKEKIASVILYGLVIQGLMILPVT KNLIEGSVFMKFGKKIIKNVIEKRVAKVSDGVGTKPRLNQNSPNIFGQWMGQTEKPKKNI EK >gi|284795517|gb|ADDQ01000032.1| GENE 38 36080 - 37351 690 423 aa, chain + ## HITS:1 COG:SP0527 KEGG:ns NR:ns ## COG: SP0527 COG2972 # Protein_GI_number: 15900441 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Streptococcus pneumoniae TIGR4 # 186 415 187 422 446 89 28.0 1e-17 MILSLLATNVLLVSSFIVFVFLRVTLIKIECKIPLLSLLIVINLCSFAALMLGYSWLIYA LTVVIFTGFLLIHKKRFSIFKAIFLSVFTLLMVSFINYTEQTILSVFFQQIYQNKLLWIA SNVLLLLINIWIALKIPNSVFLRLNRVLENSRIFFGCLLLLLILLLLFVFLISPEISPDF MRGFVTVNSSKLELLISVGLFLILIGLVIEAYLEEQRINTQLLNNLTIYTEKIESINEEL AMFRHDYKNLLYSLQIAISYEDILEIKRIYEETIAPTKKIIDNEEFELMKLNRLKNMELK ALISMKINTAKQAKLKVIVDVPEVFILDTSIDLVVVIRLLAILLDNAIENSAKSELKMFA ISIFNKNETQEFVITNSVQAEFDFKVMKKTKFSSKSNPEEHGWGLLYVKEIEKNHNSKKV VNE >gi|284795517|gb|ADDQ01000032.1| GENE 39 37589 - 39118 1711 509 aa, chain + ## HITS:1 COG:BS_nprE KEGG:ns NR:ns ## COG: BS_nprE COG3227 # Protein_GI_number: 16078534 # Func_class: E Amino acid transport and metabolism # Function: Zinc metalloprotease (elastase) # Organism: Bacillus subtilis # 56 490 75 521 521 176 31.0 8e-44 MKGNKILYILGTGIFVGSSCLFSSLFVAAEEQVYSESEVSTVLSKLEKEAISEAAAEQYT VVDRKEDAWGMKHLKLEKQTEGVTVDSDNVIIHLDRNGAVTSVTGNPVDQVVKIQSVDAI GEEGVKKIIASDNPETKDLVFLAIDKRVNNEGQLFYKVRVTSSPTGDPVSLVYKVNATDG TIMEKQDLTEHVGSEVTLKNSFQVAFNVPVEKSNTGIALHGTDNTGVYHAVVDGKNNYSI IQAPSLVALNQNAVDAYTHGKFVKTYYEDHFQRHSIDDRGMPILSVVDEQHPDAYDNAFW DGKAMRYGETSTPTGKTYASSLDVVGHEMTHGVTEHTAGLEYLGQSGALNESYSDLMGYI ISGASNPEIGADTQSVDRKTGIRNLQTPSKHGQPETMAQYDDRARYKGTPYYDQGGVHYN SGIINRIGYTIIQNLGIEKAQTIFYSSLVNYLTPKAQFSDARDAMLAAAKVQYGDEAASV VSAAFNSAGIGAKEDIQVNQPSESVLVNE >gi|284795517|gb|ADDQ01000032.1| GENE 40 39167 - 40021 823 284 aa, chain + ## HITS:1 COG:SA0901 KEGG:ns NR:ns ## COG: SA0901 COG3591 # Protein_GI_number: 15926635 # Func_class: E Amino acid transport and metabolism # Function: V8-like Glu-specific endopeptidase # Organism: Staphylococcus aureus N315 # 43 272 64 280 342 80 27.0 4e-15 MKKFSIRKISAGFLFLILVTLIAGFSLSANAEEYIVPAESHSRQKRSLLDPEDRRQEVAD TTEAPFASIGRIISPASKPGYISLGTGFVVGTNTIVTNNHVAESFKNAKVLNPNAKDDAW FYPGRDGSATPFGKFKVIDVAFSPNADIAVVTVGKQNDRPDGPELGEILTPFVLKKFESS DTHVTISGYPGEKNHTQWSHENDLFTSNFTDLENPLLFYDIDTTGGQSGSPIYNDQVEVV GVHSNGGIKQTGNHGQRLNEVNYNFIVNRVNEEENKRLSAVPAA >gi|284795517|gb|ADDQ01000032.1| GENE 41 40169 - 40999 640 276 aa, chain - ## HITS:1 COG:PH1607 KEGG:ns NR:ns ## COG: PH1607 COG1235 # Protein_GI_number: 14591382 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Pyrococcus horikoshii # 1 272 1 245 249 63 26.0 6e-10 MKINYLGTGAAERIPGIFCNCKLCKYAREKKGREIRTQTQLIIDDVLLIDFPGDSYLHLL QYDLCFADFDSLLISHWHSDHFYGEDLAYRMSGYALDIPNRLTVYGNEAVKTFYQRAFDL EGRQDDTRLHYQVIQPYKCFTIANYTIYPLPAQHGNFSEDCFIFVIDDGKDAFLSTHDTG YFTSEMFEYLEKSHLLLSIVSLDCTSQTNETGNSHMNWEENLKLIAELKERKLVTDKTIY VANHFSHNGGLSYAEMAALSQKHEIITSYDGLEILT >gi|284795517|gb|ADDQ01000032.1| GENE 42 41391 - 42245 583 284 aa, chain + ## HITS:1 COG:BS_yclA KEGG:ns NR:ns ## COG: BS_yclA COG0583 # Protein_GI_number: 16077430 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 1 227 1 238 290 69 26.0 5e-12 MTIEKLEYFYTIAKYNSISKAASELHVSKSTLSASLKDLESELGHLLFNRNGNSLTLNSY GDKIVQSVYIILNEAKKMKLNLHEMIENPVMRLGFGNTSLMYKVTENEDQLNRFWECYHG SSFELLNKLENHELDFVITSADVNSPVLKKEQLIELKMYLCVSREIKQEIEEEGFSCLTN YPFLFLPHHLDHLEATKSVLEMLQLTSPLVCCYDTLMLTRLIEKSKGVYAVISLRKEQLQ EIDSKLFFLPIERKQKFYLYRNVSSSVFVQPGQIKATLQKLLET >gi|284795517|gb|ADDQ01000032.1| GENE 43 42627 - 44015 1098 462 aa, chain + ## HITS:1 COG:mll2542 KEGG:ns NR:ns ## COG: mll2542 COG0477 # Protein_GI_number: 13472297 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Mesorhizobium loti # 14 421 14 421 505 210 32.0 5e-54 MIDRKKVILYTCCMSLFVVTMDVTVVNVALPSIQSDFHTNLSTLQWVTDGYTLMVASLLL LSGSTADRIGRKRVLQLGLACFGLASFLCGISQTPGQLIAFRMLQGIGGSMLNPVAMSII TQVFTEKLERAKAIGLWGSVTGISLGMGPIIGGLIVSYFSWRYVFFVNVPIIAAAIILTQ KFVPESKVEKTVKNDFVGQALMILFLFSSIYSIIGLPRKGLFAPDILSTGIIGCLAIVIF FIYEYNIDNPLINPRFFLSIPFTSASFLAIFGFIIYNGYLFLNTLYLQEMRGFSPLEAGL STIPLAFVSFLVAPRAGEMVGRIGTKRPIMLCGISMLAVSFLQLFVTKTTPMIILFIIYI FLGIGFGMLNSPITITAIEGMPLSQSGIAAAIAVTCKQIGNSLGVALPSLLITKPITSSL TRTPFTNVWLLFGCCAIAIIFLSYLSNSPLAKKSLRRVRFYF >gi|284795517|gb|ADDQ01000032.1| GENE 44 44057 - 46117 1810 686 aa, chain + ## HITS:1 COG:lin0927 KEGG:ns NR:ns ## COG: lin0927 COG1368 # Protein_GI_number: 16799998 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Listeria innocua # 4 647 12 643 653 547 45.0 1e-155 MKKINNRLGLFLFFVLLFWAKTILAYYLDFSLGVKGSLQREILWFNPVATTLLLFGFSLY FKKHKTFMLSLTLLNVLNTLILYLNIIFYREFTDFITIQSVFGFSKVSEGISGDLLALMR VHDVFYWLDTLVLLVLVFYSFKQRRNHQVFVTKPINRRLAISISCLSVLLFSVNLFLSET DRPQLLQRIFDRNYIVKYLGLDAFTAIDGVKTAMSNEVRAEASSNELPEIMKFTKQNNLP LNPQYAGIAKGKNVFVIHLESFQQFLINMKVQGQEVTPFLNQLYQNKATISFDNFFHEVG QGKTSDAENMLETGTFGLPQGSLFTQLGSDNTFEAAPAVLGQKGYTTAVFHGNVGSFWNR DHVYKNLGYQYFFDRSYFSKDDKMLGYGILDKQLLRESASELEHLQQPFYAKFLTVTNHT PYYTDDQNFPFPKLNTGNSIVDDYVRTAHYLDQSLEQFFHYLQTTSLYNHSIFVIYGDHF GISDANNKDLCKAFNRDPKTWTNYDNAQLQRVPLMFYMPGYTQGKIMHEYGGEIDVLPTL YHLLGVDDKNYIHFGTDLLSPQYKQVVPFRNGDFVTPQFSYLGGEIYNNQGKKLDQVPAD LKAEVTKDNDWVKKSLSLSDKLNQENLLRFYKPLGFQEVQPKDYNYDVAFEKNKVLEVEK QKNAQSTSLFSQNGNQTTVQNYPTTP >gi|284795517|gb|ADDQ01000032.1| GENE 45 46618 - 47463 773 281 aa, chain + ## HITS:1 COG:BS_gspA KEGG:ns NR:ns ## COG: BS_gspA COG1442 # Protein_GI_number: 16080894 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Bacillus subtilis # 1 272 1 271 286 214 41.0 1e-55 MRKNQKIVPIVTASDENYAPYLNVMMTTVLENCHAERPVHFYVIDDGLSLSSKKALRETV SSNSQNATVEFLTADKEVYQNFLVSDHITTTAYLRISLPSLLQKYSYKKVLYLDADTLVL DDIVQLYDTPLVNQTIGAVIDPGQAYALKRLGIHSSDYYFNSGVMIIDIDRWNEKAITQK TIQYLEENGDRIVYHDQDALNAVLYEDWLALEPRWNMQTSLVFNRHEAPNEAYQKLYTAG NQEPAIIHFTGHDKPWNTLENHPYTALYLNKLKKVGARNGK >gi|284795517|gb|ADDQ01000032.1| GENE 46 47453 - 48355 708 300 aa, chain + ## HITS:1 COG:BS_gspA KEGG:ns NR:ns ## COG: BS_gspA COG1442 # Protein_GI_number: 16080894 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Bacillus subtilis # 1 291 1 275 286 235 41.0 1e-61 MENRKELAIVSCCNTNFVPHLAAMFVSILENSPSAAAVHFYVIDDNINFESKQLLYFTIK HTQINAELTFLKINPHFFKNVVTSERIPKTAYYRIAIPELFRGSQIERLLYMDCDMIALD DVAKLWTVDLGENIIAAVEDAGFHQRLEKMAIPAESMCYFNSGLLLIDVKKWLNLDVTTK VLRFIEENPDKLRFHDQDALNAVLHDRWTLLHPKWNAQGYILSKAKKHPTIYGEKQYEET RRAPSIIHFTGHVKPWTKEFQWYTKRYYDQYANRTAFRCVNTFNQYLSYTKISRRIEYAQ >gi|284795517|gb|ADDQ01000032.1| GENE 47 48288 - 48419 56 43 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSTHSINIYLIRKLVEGLNMLNNEYCHGFRKISYLLVVARTKQ >gi|284795517|gb|ADDQ01000032.1| GENE 48 48741 - 49472 675 243 aa, chain + ## HITS:1 COG:SPy0715 KEGG:ns NR:ns ## COG: SPy0715 COG2188 # Protein_GI_number: 15674773 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 6 242 3 239 240 229 52.0 4e-60 MENAFKNKALYHQLVDLLQERIETCMIPHDKLPSERELTAQYGVSRTTVRLALQELENRG SIYRRHGKGTFVSDIKKEAADLAGAYSFTEQMKGLGRKPHTRILSFEKLEADKFICQHLN LSLGEAVFKLSRLRIADNEPLMVEDTYLPVKFFLSLTDQLLRSKPLYDLFSEDFKQTVRL ADEELYASIASKEDAKLLMIPEGAPVLHLARQTYNMKNEIIEFTLSVARADQFHYQIRHI RNS >gi|284795517|gb|ADDQ01000032.1| GENE 49 49484 - 50656 1438 390 aa, chain + ## HITS:1 COG:SPy0716 KEGG:ns NR:ns ## COG: SPy0716 COG2222 # Protein_GI_number: 15674774 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted phosphosugar isomerases # Organism: Streptococcus pyogenes M1 GAS # 1 389 1 389 399 443 56.0 1e-124 MFTAEKEELEQLGAEITTREIRQQPELWQETVTLYHENQTALENFLKEVQAKAQGKRTRV IFTGAGTSQYVGDTVVPYLRAHGDTQAFSFESIGTTDIVAKPEDYLIKDEPTLLVSFARS GNSPESLAAVEVANQVVETIHHLAITCAEEGQLAQISQKEENSFLFLMPTRSNDGGFAMT GSFSCMTLGTLLLFDQTAFEQKQDYVTALIKLGEEVLSREEELNEIVNLDFERIVYVGSG SLAGLTREAQLKILELTAGKVATIFDSSMGFRHGPKSFINEKTIMFGFVNNTPYTRDYDL DILEEVHGDEIAAGVFAIAQPGKRNFSGSTIEYSAETALLPDGYLALADIMVAQTVALLT SIKVGNKPDTPSPTGTVNRVVKGVTIYDYK >gi|284795517|gb|ADDQ01000032.1| GENE 50 50679 - 51674 1212 331 aa, chain + ## HITS:1 COG:SA1994 KEGG:ns NR:ns ## COG: SA1994 COG3684 # Protein_GI_number: 15927772 # Func_class: G Carbohydrate transport and metabolism # Function: Tagatose-1,6-bisphosphate aldolase # Organism: Staphylococcus aureus N315 # 8 325 7 325 326 399 63.0 1e-111 MLTLTAGKKAAMDRLSTQEGIISALAIDQRGALKKMIKALDVEPTDAQIETFKELVSKEL TPYASAILLDPEYGLPAAKARDTEAGLLLAYEKTGYDATTPGRLPDLLADWSVLRLKEEG ADAIKFLLYYDVDEDPEINHQKHVFIERLGSECAEEDLPFYLELVSYDAQIADATSLEYA KVKPHKVNEMMKEFSKPQYKVDVLKVEVPVNMNFVEGFAPAETAYTKEEAANYFLEQSQA TDLPFIFLSAGVSTELFQETLRFAKEAGSTFNGVLCGRATWKNGVKPFVEAGETAACDWL KTEGRENIESLNEVIAATASSWHAKVQVNEG >gi|284795517|gb|ADDQ01000032.1| GENE 51 51690 - 52631 921 313 aa, chain + ## HITS:1 COG:SA1995 KEGG:ns NR:ns ## COG: SA1995 COG1105 # Protein_GI_number: 15927773 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Staphylococcus aureus N315 # 1 311 1 310 310 305 50.0 7e-83 MIVTVTMNPSIDISYLLDHLKLDTVNRTSQVTKTPGGKGLNVTRVIHDLGGDVIATGVLG GFHGAFIANELKKANIPQAFTSIKEETRDSIAILHEGNQTEILEAGPTVSPEEISNFLEN FDQLIKQAEIVTISGSLAKGLPSDFYQELVQKAHAQEVKVLLDTSGDSLRQVLQGPWKPY LIKPNLEELEGLLGQDFSENPLAAVQTALTKPMFAGIEWIVISLGKDGAIAKHHDQFYRV KIPTIQAKNPVGSGDATIAGLAYGLAKDAPAAELLKWGMAAGMANAQERMTGHVDVENVK KHLMNIQVVEIAK >gi|284795517|gb|ADDQ01000032.1| GENE 52 52694 - 54478 1826 594 aa, chain + ## HITS:1 COG:SP0060 KEGG:ns NR:ns ## COG: SP0060 COG1874 # Protein_GI_number: 15900005 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase # Organism: Streptococcus pneumoniae TIGR4 # 1 590 1 591 595 844 67.0 0 MDRFEIKEEFLLNGQSFKILSGAIHYFRVDPSDWHHSLYNLKALGFNTVETYVPWNLHEP QKGTFHFEGILDLERFLKLAQELGLYAIVRPSPYICAEWEFGGFPAWLLNEPGRMRSNNP TYLKHVAEYYDVLMEKIVPHQLANGGNILMIQIENEYGSFGEEKAYLRAIRDLMIARGVT APFFTSDGPWRATLRAGSMIEDDILVTGNFGSKAKENFGMMQAFFEEHGKKWPLMCMEFW DGWFNRWKEPIIKRDPQELAESVREALALGSINLYMFHGGTNFGFMNGCSARGTIDLPQI TSYDYDAPLDEQGNPTEKYFALQKMLHEEYPALPQAEPLVKESFAQTAIPLTNKVSLFAT LETISQPVVSVYPQTMEQLGQNTGYLLYRTSIEKDAAEEKLRVIDGRDRLQLFVNQVHQA TQYQTEIGEDIYVTLPQENNQIDILMENMGRVNYGHKLFADTQKKGIRTGVMADLHFMTQ WQQYCLPMTSCEQVDYSREWQPDQPSFYQYHVELAEVKDTFIDVSKFGKGIVFVNQTNLG RFWNVGPTLSLYIPKGLLKEGQNEIVIFETEGTYQPEIQLVKEPLYKEMKEGLQ >gi|284795517|gb|ADDQ01000032.1| GENE 53 54475 - 54954 563 159 aa, chain + ## HITS:1 COG:SP0061 KEGG:ns NR:ns ## COG: SP0061 COG3444 # Protein_GI_number: 15900006 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Streptococcus pneumoniae TIGR4 # 1 157 1 157 158 226 75.0 2e-59 MSIIGVRIDGRLIHGQVANLWATKLNISRIMVVDDEVAGNAIEKSGLKLATPAGVKLSVL PVEKAAQNILAGKYDSQRLLIVVRKPDRLLKLVELGVPIKEINVGNMSQTNETRSITKSI NVVDQDIEVFKELNAKGVHLIAQMVPSDKAEDFMSLITK >gi|284795517|gb|ADDQ01000032.1| GENE 54 54968 - 55867 1285 299 aa, chain + ## HITS:1 COG:SP0062 KEGG:ns NR:ns ## COG: SP0062 COG3715 # Protein_GI_number: 15900007 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Streptococcus pneumoniae TIGR4 # 3 298 2 300 301 288 52.0 9e-78 MNILWWQILLLTLYAGYQILDELQIYSSLSAPVFAGLFAGLVMGDIKAGLIIGGSMQLTV LGVGTFGGASKIDANSGTILATAFSVSLGMNPEQAIAAIAVPVASLMIQLDILARFANTY FAHRIDKMVEDMNYKGIERNFLMGALPWSLSRMIPVFLALAFGGGLVQKVVSVLNGDLKW LGDGLSVAGAVLPAVGFAILLRYLPVKKHFPYLILGFTVTALLGTIFTNMQLLGTSVASV VKDFSGVFNALPMLAVALIGFALAAISYKNGQMIPSGPAAKKEHAANDSDEGEIEDDEI >gi|284795517|gb|ADDQ01000032.1| GENE 55 55854 - 56663 903 269 aa, chain + ## HITS:1 COG:SP0063 KEGG:ns NR:ns ## COG: SP0063 COG3716 # Protein_GI_number: 15900008 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Streptococcus pneumoniae TIGR4 # 1 265 1 265 271 351 64.0 1e-96 MTKSNYKLTKEDFKQINRRSLFTFQLGWNYERMQGSGYLYTILPQLRKIYGDDTPELKEV MKTHTQFFNTSNFFNTIITGIDLAIEEKEGIAGKQTVSGLKTGLMGPFAAIGDSIFAALI PTIFGALAANMAINGNPTGIFIWIVAQIAVMVFRWKQLEFAYREGISLVTTMQHRLTALT DAATLLGVFMVGALVATMVNVKLSWAPSIGDVTLNMQNNLDMILPRLLPAGIVGGVYWML GKKNMTSTKAIFIVLIVCVALSALGVISK >gi|284795517|gb|ADDQ01000032.1| GENE 56 56683 - 57090 517 135 aa, chain + ## HITS:1 COG:SP0064 KEGG:ns NR:ns ## COG: SP0064 COG2893 # Protein_GI_number: 15900009 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Streptococcus pneumoniae TIGR4 # 1 135 1 134 134 170 64.0 7e-43 MSEHLVLVSHGRFCEELKKSAEMIMGPQETISTVALLPEEGEADFLEKFEAITESLEDFV VFADLLGGTPCNILSKKIMQGASFDLYTGMNLPMVISYVNASLLAIEGDYVKESAESIVK VNELLLNVAVDDEDE >gi|284795517|gb|ADDQ01000032.1| GENE 57 57240 - 61214 3919 1324 aa, chain + ## HITS:1 COG:no KEGG:EF1800 NR:ns ## KEGG: EF1800 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 1324 1 1324 1324 2497 99.0 0 MKHGKIKRFSTLTLLASATILVPLSTSAEETTNSSTETSSSMVEPTATEEKLWQSDFPGG KTGEWQDVIGKTNRELAGESLAISRDAAAGNNAVSLNLDSPKLADGEVETKFKYTAGSGR TGVIIRGNTKDSWVFVGYNANGKWLVESPNSWNDSISGPTLNEDTNYLLKVRYVGEKITI WLNTTLIYEGEPVLANGDKIPTEAGHVGVRLWYDKKIVNYDYFKNGPVDSIPEIVPEVTQ IAPVKVFTKIGVAPKLPKQVKVTYNTGKEANEAVRWNEIDPDAYKEPGTFEVDGTLENTN IKAKASIVVAKDNEAEKGDKISSADLTAVVDPQFPRIIRYEDPQSNQVIFNGQHEKIDQV MIDGKAYKATAEKQKSEANQAVYNVAVPEIGLRFTTTLTVSEGQELAMKLSDIREEGTKI HTISIPNQGLISVNSTDEGATFAGVVMNTGTNANNGNKNGDTIQDLTTTSQEETKKYMYG FLNTANYAASFWTNAYGDGSVDGSDNNRIHKQTKEAATGFVTTLSSGAWTYRPFDAPEDY TTGETPEVKVKFSKDSNDDNRVDWQDAAIGFRSIMNNPMGAEKVPELVNQRIPFNFASQA TNPFLVTLDESKRIYNLTDGLGQMNLLKGYQNEGHDSAHPDYGAIGQRPGGEQALNQLID EGHKLNAVFGVHINDTESYPEAKGFNEELVDPTKRGWDWLDPSYFIKQRPDTLSGRRYER FKELKQKAPNLDYIYVDVWGNQGESGWASRQLSKEINSLGWFTTNEFPNALEYDSVWNHW SAEKDYGGTTTKGFNSTIVRFIRNHQKDTWIISDNPLLGGAEFEAYEGWVGKTNFNTYRQ KTFAINVPTKFLQHYQITNWETTTAADGQIYGTIKLANGAEKVTVTQADANSPRSITLNE TEVLKGDAYLLPWNVNGQDKLYHWNPKGGTSTWSLDKKMQGKTNLHLYELTDQGRIDKGA IATTNNQVTIQAEANTPYVIAEPDSIEPMTFGTGTPFKDPGFNEANTLKNNWKVFRGDGE VKKDANGDYVFSSEKERTEIKQDINLPKPGKYSLYLNTETHDRKATVTVKIGGKKYTRTV NNSVAQNYIQADINHTSRKNPQYMQNMRIDFEIPDNAKKGSVTLAVDKGNSVTKFDDLRI VERQTDIMNPDKQTVIKQDFEDTQAVGLYPFVKGSAGGVEDPRIHLSERNEPYTQYGWNG NLVSDVLEGNWSLKAHKQGAGLMLQTIPQNIKFEPNKKYTDQFDYQTDGENVFTAGTING ELKNNNDFKPVGELTSTAADGQTKHYEAEIIGDASGNTTFGIFTTGADKDFIMDNFTVTV ESKK >gi|284795517|gb|ADDQ01000032.1| GENE 58 61455 - 62609 953 384 aa, chain + ## HITS:1 COG:lin0908 KEGG:ns NR:ns ## COG: lin0908 COG0628 # Protein_GI_number: 16799980 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Listeria innocua # 78 365 69 350 378 96 27.0 6e-20 MKKYNVDWNYWVVRFLFVMALIVGYLLITNYQHFVHSVSGLLGILSPFITGFVIAYLLSG SQKKIEGLLERVPLPVVKKAKHGLSVLLLYLIILFIFVLTLNYIVPLLISNLVDLANSLP TFYDHMVQFVMSLEDKGILKTAAIEKYLNSVLKDLSPERFLNQWTQALFSLGTLTKNVSS FFLNAFLTLIISIYALVFKQSILTFVEKAAHKLLSEKVYKQTQTWLNTTNKIFYKFISCQ FLDACIIGVSSTILLSILNVKFAVTLGILLGICNMIPYFGSIFASIVAGVITLFTGGVTQ AITVLLVLLILQQIDGNIIGPRIMGDALNVNPILIIVSITIGGAYFGVLGMFLAVPVAAI IKIIVSEWLNESKENDKIVDSIES >gi|284795517|gb|ADDQ01000032.1| GENE 59 62730 - 63374 489 214 aa, chain + ## HITS:1 COG:no KEGG:EF1797 NR:ns ## KEGG: EF1797 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 214 1 214 214 400 100.0 1e-110 MQFLKKYGGYFLVLGVLLDFFTPYYVGFKDQGYNQLTEVISLLGDVNSPVRENFNRLTII AGMLMLASLPRIYAIFSRKTKKGAWLVVAMIGAYGLFDCIFSGLFSVDTSSAGTVAAALH NGGSAVGYTGFLLLSGVLTIIYSKYGSQKNKNLFGFLFILCMLAAGLYGLARIPQLQQVK PFNYLGLWQRVSSFCNYLPMLALCLQTKTNDKFD >gi|284795517|gb|ADDQ01000032.1| GENE 60 63421 - 63990 699 189 aa, chain - ## HITS:1 COG:no KEGG:EF1796 NR:ns ## KEGG: EF1796 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 189 15 203 203 283 100.0 2e-75 MKMSKVLTTVLTATAALVLLSACSSDKKTDSSSSSKETANSSTEVVSGASISAKPEELEM ALSDKGNWIVAATDNVTFDKEVTVAGTFHDKGKDSNDVYRKLALYSQDDNKKVTAEYEIT VPKLIVSSENFNIVHGTVKGDIEVKANGFTLNGTKVNGNITFDKQEYKDSADLEKDGATV TGEVTVANN >gi|284795517|gb|ADDQ01000032.1| GENE 61 64211 - 64663 646 150 aa, chain + ## HITS:1 COG:BS_ydaT KEGG:ns NR:ns ## COG: BS_ydaT COG4876 # Protein_GI_number: 16077505 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 143 1 143 150 96 40.0 2e-20 MPWNMNDYPTSMKNLAPLIRKKAIDIGNALLADGYPDDRAIPIAISQAEKWYQEASAADK KAFEQEANPTKQDSHKQDKHAGKLLTAAVNVKYKDGQWLVISDSAEKASNTFTHKQEAIE RAQEIARNKQTKLKIYKQDGTLQETKEYTE >gi|284795517|gb|ADDQ01000032.1| GENE 62 64854 - 65873 1183 339 aa, chain + ## HITS:1 COG:lin0977 KEGG:ns NR:ns ## COG: lin0977 COG0115 # Protein_GI_number: 16800046 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase # Organism: Listeria innocua # 5 339 4 338 339 542 75.0 1e-154 MEKANLDWNNLGFSYIKTPFRYISYWRDGKWEEGTLTDNNQLTISEGSPALHYGQQCFEG LKAYQCADGSVNLFRPDENAKRLQKSCARLLMPQVPVETFVSACQEVVKANLAYLPPYGT GGTLYLRPYMIGVGDNIGVAPAKEYIFSIFCVPVGSYFKNGLAPTNFIVSEYDRAAGRGT GAAKVGGNYAASLLPGAEAHEKEFSDCIYLDPYTHTKIEEVGAANFFGITKDGTFITPKS ASILPSITKYSLLTLAKERLGMTALEGDVYIDRLADFSEAGACGTAAIISPIGGIQNGTD FHVFYSETEVGPVTKQLYDELVGIQFGDKEAPEGWIVKV >gi|284795517|gb|ADDQ01000032.1| GENE 63 66007 - 66327 432 106 aa, chain + ## HITS:1 COG:no KEGG:EF1792 NR:ns ## KEGG: EF1792 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 27 106 1 80 80 152 100.0 2e-36 MLIKSAESEEMTIFFDKENQPNAQVQMGIITLQPGEKRPLAGYARHEQDEYSYVISGEAH TILEDGQDLVGKAGQAQLIEAGEGHINYNNGLEPAVVVWMLVERTK >gi|284795517|gb|ADDQ01000032.1| GENE 64 66390 - 68030 1612 546 aa, chain + ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 1 545 1 549 549 474 46.0 1e-133 MKKYLKITMVCILLVGFLAGCTNKNENKKKQKNTKEAVQLMSPSELTTLNTSVLLDFPDA IVQTAAFEGLYSLDEQDQLVPAVAKALPMISEDGKTYTISLRKEAVWSNDDPVTAHDFEY AWKKMIDPKNGFVYSFLIVETIQNGAEISAGKLAPNELGVTAVDDYTLKVTLKEPKPYFT SLLAFPTFFPQNQKVVEQFGADYGTASDKVVYNGPFVVKDWQQTKMDWQLAKNNRYWDHQ NVRSDIINYTVIKETSTALNLFEDGQLDVATLSGELAQQNKNNTLYHSYPTATMNYLRLN QKRKGQATPLANENLRKALALGIDKENLVNNIIADGSKALHGAITEGFVANPTTGLDFRQ EAGNLMVYNKEKAQSYWKKAQAELGEKVNVELMVTDDGSYKKIGESLQGSLQELFPGLTI ELTALPTEAALNFGRESDYDLFLIYWTPDYQDPISTLMTLYKGNDRNYQNPVYDKLLDEA ATTYALEPEKRWATLIAAEKEVIETTAGMIPLSQNEQTVLQNDKVKGLNFHTFGAPLTLK NVYKEK >gi|284795517|gb|ADDQ01000032.1| GENE 65 68128 - 69003 333 291 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90022317|ref|YP_528144.1| ribosomal protein S15 [Saccharophagus degradans 2-40] # 13 248 239 475 500 132 35 7e-30 MRYLSKDILEEVITQRPSDSYKSNFGRVVLIGGNRQYGGAIIMSTEACINSGAGLTTVIT DVKNHGPLHARCPEAMVVGFEETVLLTNVVEQADVILIGPGLGLDATAQQILKMVLAQHQ KQQWLIIDGSAITLFSQGNFSLTYPEKVVFTPHQMEWQRLSHLPIEQQTLANNQRQQAKL GSTIVLKSHRTTIFHAGEPFQNTGGNPGMATGGTGDTLAGIIAGFLAQFKPTIETIAGAV YLHSLIGDDLAKTDYVVLPTKISQALPTYMKKYAQPHTAPDSELLEQKRSR >gi|284795517|gb|ADDQ01000032.1| GENE 66 69153 - 70019 1091 288 aa, chain + ## HITS:1 COG:Cgl2775 KEGG:ns NR:ns ## COG: Cgl2775 COG0330 # Protein_GI_number: 19554025 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Corynebacterium glutamicum # 19 286 46 323 325 232 42.0 6e-61 MEEKKTFYMSGYVGIASLLVILIAGIGLFIYGASHTNGVLVVLGIILLVGAILFLSSLTI VSPNQAKAILFFGRYLGTIKENGLFITIPFTQKMNISLKVRNFNSSLLKVNDSDGNPIEI SAVIVFRVVDTAKALFNVDYYQDFVEIQSETAIRHVATQYPYDTFSDNDVTLRGNTEQIS EELTKELQERLAVAGVEVIETRLNHLAYATEIASSMLQRQQAKAILAARQTIVEGAVSMT QMALEQIEEGQEINFTDERKVQLINNLLVSIITDKGTQPVINTGDVSS >gi|284795517|gb|ADDQ01000032.1| GENE 67 70191 - 70679 552 162 aa, chain + ## HITS:1 COG:BS_purE KEGG:ns NR:ns ## COG: BS_purE COG0041 # Protein_GI_number: 16077710 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase # Organism: Bacillus subtilis # 1 161 1 161 162 219 70.0 1e-57 MKPLVAVIMGSTSDWATMKAACLVLEELKIPYEKRVISAHRTPDLMFRFAEESRTKGLKV IIAGAGGAAHLPGMVAAKTTLPVIGVPVKTRTLNGIDSLLSIVQMPGGVPVATTAIGSAG ATNAGLLAAEILSIDDLQLAERIQARRQSLEKAVMESGEQLE >gi|284795517|gb|ADDQ01000032.1| GENE 68 70672 - 71796 869 374 aa, chain + ## HITS:1 COG:lin1886 KEGG:ns NR:ns ## COG: lin1886 COG0026 # Protein_GI_number: 16800952 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) # Organism: Listeria innocua # 18 371 19 373 374 380 52.0 1e-105 MNKPLKVGATIGIIGGGQLGRMLVMSGKKMGFQMIVLDPTLNSPAGQVADRQIVAAFDQI SALTELAELSDVITYEFENIEVASLEKAIPLEKLPQGTELLKITQNRLLEKTFLQSIGCK IAPFAEVKSQKELPQAIEKIGFPCVLKTIQGGYDGKGQVVLKCEEDFSQATKLLANATCE LEKWVPFTKELSIIVAGNKHGYQSFPVSENIHRKNILHESIVPARISENVQQKAAELAQY IAEELNLSGVLAIEMFLTDSEELYVNELAPRPHNSGHYSIEACSFSQFDAHIRGISNWGI GLPQLLQSVVMVNLLGEHLEKSYQLCTSKPTWQVHYYGKAESKVGRKMGHVTITTPCLSE TLKEIETVGIWNVT >gi|284795517|gb|ADDQ01000032.1| GENE 69 71948 - 72661 688 237 aa, chain + ## HITS:1 COG:BS_purC KEGG:ns NR:ns ## COG: BS_purC COG0152 # Protein_GI_number: 16077713 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase # Organism: Bacillus subtilis # 3 233 5 235 241 261 57.0 6e-70 MEKKALVYTGKAKKLYQTENAAVLFVEYLDQATALNGQKKDKVLGKGALNNQITSLIFEH LQQQKIPNHFIKKVSEHEQLIQVVEMIPLEVVVRNYAAGSFSKRLAIEEGTKLVTPIIEF YYKEDRLDDPFINEDHIQFLKVATPAEIVEIKALALQINQALSQLFQRLNICLIDFKIEI GRTKANQLLLADEISPDTCRLWDLNTNEHLDKDVYRRELGEIVPVYEEVLQRLLTAN >gi|284795517|gb|ADDQ01000032.1| GENE 70 72675 - 72926 352 83 aa, chain + ## HITS:1 COG:BH0627 KEGG:ns NR:ns ## COG: BH0627 COG1828 # Protein_GI_number: 15613190 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component # Organism: Bacillus halodurans # 1 77 1 78 84 79 53.0 2e-15 MYFVKVYVTYKESILDPQGEAVKEAVHRLGFTEVAEIRVGKYFEMHVQQTEAIEEKIEQI CDQLLANVNMESYRFEILSLEEI >gi|284795517|gb|ADDQ01000032.1| GENE 71 72927 - 73601 560 224 aa, chain + ## HITS:1 COG:L176360 KEGG:ns NR:ns ## COG: L176360 COG0047 # Protein_GI_number: 15673513 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain # Organism: Lactococcus lactis # 1 218 1 220 223 302 66.0 3e-82 MKLAVIVFPGSNCDADLLWAVKEVMGIDAEFVRHDATSLAKFDGVLLPGGFSYGDYLRCG AIARFSPIINEVIRFATEGKMVFGTCNGFQILTEIGLLPGTLLRNDSLRFICKSVPLKVN THTKFTSEYPENVSIHLPVAHGEGNYYCDEKTLKELKEKNQIVFTYQEKVNGSLANIAGI CNEQGNVLGMMPHPERAMEELLGSTDGRSFFASIIKNFGKELSQ >gi|284795517|gb|ADDQ01000032.1| GENE 72 73598 - 75817 2117 739 aa, chain + ## HITS:1 COG:L173921 KEGG:ns NR:ns ## COG: L173921 COG0046 # Protein_GI_number: 15673512 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain # Organism: Lactococcus lactis # 1 736 1 739 739 1024 68.0 0 MMNEPTPKEIKETRLYAEWGLTDEEYHQIETILQREPNYTETGLFSVMWSEHCSYKNSKP VLKKFPTEGPQVLQGPGEGAGIVDIGDGLAVVFKAESHNHPSAVEPYEGAATGVGGIIRD IFSMGARPIALLDSLRFGELTDARTRYLFQEVVAGISGYGNCIGIPTVGGEIAFEPCYQG NPLVNAMCVGLIRHDEIQKGQAKGVGNSILYVGAKTGRDGIHGATFASEEFSEGEEQQRS AVQVGDPFMEKLLLEACLDLIKNHQDILIGIQDMGAAGLVSSSAEMASKAGSGLILELDK VPQRETQMSPYEMLLSESQERMLICVEKGAEQQVCELFQTYDLEAVAIGSVTDDGQYRVF HGGKIVADVPVDALAEEAPVYQKAYQEPERMRAFKKLAPFIPEITNSTELLKRLLQQPTI ASKKSVYETYDSQVQTNTVVQPGSDAAVLRVRGTNKALAMTTDCNSRYLYLNPEIGGQIA VAEAARNIVASGAQPLAITDCLNYGSPDKPESFWELWTSADGIAAACRQLGTPVISGNVS LYNETDGQAIYPTPMIGMVGVIEDVSQITTQAFKQVDDLIYLIGETHADFNGSEIQKIQL GRIEGQLRSFDLKEEKANQELVLKAIQVGLVASAHDCAEGGVAVALAESAFANELGLQVT LPLKKEYLFAETQSRFILSVSPQHQEAFETLIGRKAQHIGKVTETGLVIHALDDVINCST KEAKALWEDAIPCLMKQKA >gi|284795517|gb|ADDQ01000032.1| GENE 73 75793 - 77232 1409 479 aa, chain + ## HITS:1 COG:SPy0026 KEGG:ns NR:ns ## COG: SPy0026 COG0034 # Protein_GI_number: 15674270 # Func_class: F Nucleotide transport and metabolism # Function: Glutamine phosphoribosylpyrophosphate amidotransferase # Organism: Streptococcus pyogenes M1 GAS # 1 476 1 476 484 705 70.0 0 MSYEAKSLNEECGIFGIWGHPDAAQVTYFGLHSLQHRGQEGAGIVANNSGKLDGHRDLGL LAEVFQKQEQLNALEGTAAIGHVRYATAGTGSVDNIQPFLFKFYDSQIGLAHNGNLTNAK RLRKQLEREGAIFHSNSDTEILMHLIRKSTAASFLDKLKESLNLVKGGFAYLLLTETMMI AALDPNGFRPLSIGQMNNGAYVVASETCALETVGARFIQDVAPGEVVIISDEGLKIEVFT TEVQPAICAMEYIYFARPDSNIAGVNVHTARKRMGKNLAIESPVAADMVIGVPNSSLSAA SGYAEEAQIPYELGLVKNQYVARTFIQPTQELREQGVRMKLSAVRGVVKGKKVILVDDSI VRGTTIRRIIHLLKEAEAQEVHVRIASPPLKYPCFYGIDIQTRDELIAANYSIEEIKEQI GADSLAFLSEAGLIDGIQLNYDAPYSGLCMAYFNGDYPTPLYDYEEQYQASLKKETRRN >gi|284795517|gb|ADDQ01000032.1| GENE 74 77234 - 78265 764 343 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149378138|ref|ZP_01895857.1| Ribosomal protein S7 [Marinobacter algicola DG893] # 5 320 10 320 354 298 49 7e-80 MENAYSKAGVNVEAGYEVVERIQKHSQKTQRTGTLGMLGGFGGCFDLSSYKLKEPVLVSG TDGVGTKLLLAIEEQKHETIGIDCVAMCVNDVVAQGAEPLYFLDYLALGTVNPAKVEAIV AGVAAGCCEANAALIGGETAEMPDMYEADAYDVAGFAVGIAEKSQLLTPSNVKEGDFLIG LPSSGLHSNGYSLVRNIFFKKHSFKTTDKLPELAPKTLGEELLTPTKIYVKELLPLLKAG LVHGAAHITGGGFLENLPRMFSSALAAEIQLNSWPVLPIFKLIQKYGEIPPEEMYEIFNM GLGMILAVSPEHVEKVQELLPEAFEIGRLVPRKTKAVIFKEAL >gi|284795517|gb|ADDQ01000032.1| GENE 75 78262 - 78834 277 190 aa, chain + ## HITS:1 COG:BS_purN KEGG:ns NR:ns ## COG: BS_purN COG0299 # Protein_GI_number: 16077719 # Func_class: F Nucleotide transport and metabolism # Function: Folate-dependent phosphoribosylglycinamide formyltransferase PurN # Organism: Bacillus subtilis # 2 185 3 186 195 210 49.0 1e-54 MKIAVFASGNGSNFEAIAAAFSQKKIAGHLSLVFCDQPEAYVLTRAQKRKIPVVCFSPSD FSSRGQYEEQVLKHLKEHQIDLIVLAGYLRIIGKTLLEAYPKRIVNIHPSLLPSFPGLHG IEEAFHYGVKITGITIHYVDSGVDTGPIIFQTTTKIDTEDTVDTLAEKIHALEHEWYPKI ISQIVKETMK >gi|284795517|gb|ADDQ01000032.1| GENE 76 78831 - 80372 1713 513 aa, chain + ## HITS:1 COG:SP0050 KEGG:ns NR:ns ## COG: SP0050 COG0138 # Protein_GI_number: 15899995 # Func_class: F Nucleotide transport and metabolism # Function: AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) # Organism: Streptococcus pneumoniae TIGR4 # 1 513 1 515 515 648 64.0 0 MTKRALISVSDKTGVTTFAAGLVANGFEIISTGGTRTVLEEAGVPTLAIDDITGFPEMLD GRVKTLHPNIHGGLLAKRGNQAHQKALTEQGIHFIDLVVVNLYPFKETILKPAISEAEAI EMIDIGGPSMLRSAAKNYQDVTAVVDPSDYEQVLSEISSTGTSQLATRKRLAAKVFRHTA AYDALIADYLTTQVGETEPEKQTLTYERKQTLRYGENSHQQATFYQSVVPVSLSIASARQ LHGKELSYNNIRDADAALRIASEFTEPTVVAVKHMNPCGIGTGKTILAAYRQAFEADPVS IFGGIVVLNRPVDQATAAEMHQIFLEIIIAPSFEEEALALLSQKKNLRLLTLDFHAQEKK AVELVSVMGGLLIQEQDTVVENDQAWQVVTERQPTPAERDALNFAWKAVKHVKSNAIVLA NESQTVGIGAGQMNRIGSVKIAVDQAQAAGKLQGAVLASDAFFPMADSVEYAAQHGIQAI IQPGGSIKDQASIDLANHYGIAMIFTGTRHFKH >gi|284795517|gb|ADDQ01000032.1| GENE 77 80391 - 81638 1253 415 aa, chain + ## HITS:1 COG:BH0634 KEGG:ns NR:ns ## COG: BH0634 COG0151 # Protein_GI_number: 15613197 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylamine-glycine ligase # Organism: Bacillus halodurans # 1 414 1 417 428 435 55.0 1e-122 MNILVIGRGGREHAIAKKLQQEDKVKTVYCAPGNPGMSGDNIRTVPIGEEQQTELIQFAK DNQIDWTFVGPETPLIEGIVDAFQAAGLLIFGPTKAAAIIEGSKSFAKDFMQKYQIPTAE YRVFRRLAPALEYIEQQGVPIVIKADGLAAGKGVVVAETKAAAKRALVAMMEDQQFGASG QTVVIEEFLQGEEFSLMAFVSNEKVYPMVIAQDHKRIFDGDAGPNTGGMGAYTPVPQVPE EAVQQAISQVLKPTAKGMVAEKRPFQGILYAGLIQTATGPKVIEFNARFGDPETQVVLAR LESPLSEIISSLLVKEQPTIAWNELASVGVVVAAEGYPNQYKTNLPLPEMSGATIYYAGV TRSEQALVSAGGRIFLAEATASTLEEARKKVYQTLDNYSFPGMYYRKDIGVKGLI >gi|284795517|gb|ADDQ01000032.1| GENE 78 81767 - 82096 342 109 aa, chain + ## HITS:1 COG:no KEGG:EF1776 NR:ns ## KEGG: EF1776 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 109 1 109 109 195 100.0 4e-49 MRNKQIEKVSQGLFIVTSVLAVCLLLLSAVVYPDLPAHVPIHVNFWGEGNSFGPRSSIFM WPAVLFGLSIYQRSYQSVQPYGRWLKVLLIIVNLGALFSILRLFIHLLI >gi|284795517|gb|ADDQ01000032.1| GENE 79 82117 - 82851 542 244 aa, chain + ## HITS:1 COG:no KEGG:EF1775 NR:ns ## KEGG: EF1775 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 244 1 244 244 476 100.0 1e-133 MRKLILVFVGCAMAFCLWPNQAAAVAGGYGGGRVESPSGGNPSNGFSPSGDGSRSYVHHN ETGTSNTTPLEGLISTVFFVLFGGTMIWQRRRRNQPVDEGAFQEMWAALPGTSKEKKALL KEIQQTFLEIQQAWDQENLSVVKDNYTEKLYQKHLAVLQANQQVGIRNHVKKVKVAPASN YHHISETSFSLMLHFSCIDYEEDTQSGRVLSGYKHQKQYFSQLWYFDYNPSLGKWQADFI QPKG >gi|284795517|gb|ADDQ01000032.1| GENE 80 82891 - 83412 430 173 aa, chain - ## HITS:1 COG:lin0860 KEGG:ns NR:ns ## COG: lin0860 COG4708 # Protein_GI_number: 16799934 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 21 172 10 162 162 94 39.0 8e-20 MNHSSNPQTSTWSATALAKMALVTALYVVVTVLLAPLSFGPIQLRLAELFNYLGVFNKRY IWSITLGVAIANTASPLGIIDIVIGSAGTCAVLWIAYFATKNQQNLLIKLMLTAILFALS MFTVAGPLTFFYQLPFWYTWLTVGLGELLSMTVGGILIYVLNKKIQLVKRIEE >gi|284795517|gb|ADDQ01000032.1| GENE 81 83558 - 84322 247 254 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 8 249 4 238 242 99 30 7e-20 MPKEFETKRVLVTGAASGIGQAQAIAFAEQGAEVIGIDLDETGLKQTAALVDPDSAKSFT YFVGDVSSPSFVQATMKQIVKNNGQIDILLNTAGILDDYRPSLETSEALWDQILATNLKS VFLVTNAILPYFLQQKKGVIVNMASIAGLVAGGGGAAYTASKHAIIGYTKQLSYDYAKLG IRANAIAPGAIQTPMNAADFAGEGEMAAWVARETPAGRWAQPQEVAKLSLFLASDDADYI HGTVMTIDGGWTMK >gi|284795517|gb|ADDQ01000032.1| GENE 82 84407 - 84640 454 77 aa, chain - ## HITS:1 COG:no KEGG:EF1772 NR:ns ## KEGG: EF1772 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 77 1 77 77 148 100.0 6e-35 MTFEEVLPQIKAGKKAVRKGWSGFELFIELRDEIGTSEGEFLQVTPYFLIKTSDEGYSMF SPTPCDVLAEDWVIVEA >gi|284795517|gb|ADDQ01000032.1| GENE 83 84630 - 85292 570 220 aa, chain - ## HITS:1 COG:L98095 KEGG:ns NR:ns ## COG: L98095 COG1739 # Protein_GI_number: 15673073 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 6 210 3 207 209 223 53.0 3e-58 MLESYITVKQDGFSEIEIKKSRFICSVKRVTSEEEAKAFIAAIKKEHWKANHNCSAFVIG EKNDIQRSSDDGEPSGTAGVPMLEVLKKKELINVVAVVTRYFGGIKLGTGGLIRAYSHAL SHTLDEIGLVIGKLQQELLITIAYPLLGKAQAFLEHSPYTLKETIYTESIQLICLVDEQA TETFIAEMTDLLNGQLTIEKGATNYHELPFNEKGAQANDI >gi|284795517|gb|ADDQ01000032.1| GENE 84 85434 - 85721 326 95 aa, chain + ## HITS:1 COG:no KEGG:EF1770 NR:ns ## KEGG: EF1770 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 95 1 95 95 176 98.0 2e-43 MVHTRQKKYDTITHYLKTNGGSQVNLTFTQFDELLFPHSGLPKTAKTDVDWWANDYKHPE KGAYGWLNASYQVVQVNLEKEYVVFNKLLKSAWYV >gi|284795517|gb|ADDQ01000032.1| GENE 85 85842 - 86177 445 111 aa, chain + ## HITS:1 COG:lin2831 KEGG:ns NR:ns ## COG: lin2831 COG1440 # Protein_GI_number: 16801891 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIB # Organism: Listeria innocua # 4 104 2 100 101 113 63.0 9e-26 MSKKTIMLVCSAGMSTSLLVTKMQKAAFNQGLDAHIFAASASEAETNLENNPVDVLLLGP QVRYMKSDFEKRLSPKGIPTDVISMSDYGLMNGEKVLEQALGLLAQADKKE >gi|284795517|gb|ADDQ01000032.1| GENE 86 86501 - 87217 416 238 aa, chain - ## HITS:1 COG:MA0995 KEGG:ns NR:ns ## COG: MA0995 COG3910 # Protein_GI_number: 20089872 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Methanosarcina acetivorans str.C2A # 23 236 31 250 251 199 47.0 5e-51 MENIFLKRLEFKAFEEDSVFSKIEGLNKFNSLNFKKPITFFSGENGTGKSTLLEAIAVNW GFNPEGGSINFNFSTKDTHLDLHNYLTVGKSVKRATDGFFLRAESFYNVATYAENIDLDF SEYGDKSLHHQSHGESFLNLVNHRFRGNGLYLLDEPEAALSPQRQLALMISIKKLIDEGS QFIIVSHSPILLAMPDSQIISFDKDSPLEITYEESMPYEITSLFLNNKNRILSHLFAE >gi|284795517|gb|ADDQ01000032.1| GENE 87 87489 - 88805 551 438 aa, chain + ## HITS:1 COG:lin2657 KEGG:ns NR:ns ## COG: lin2657 COG4098 # Protein_GI_number: 16801718 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) # Organism: Listeria innocua # 58 436 57 438 439 317 43.0 3e-86 MEDLHGRKIIIEETERSIQTKLVYLPTMLERSPLTIQCQRCGEVVSKKENRLATNVYYCH ACIQLGRVTSCQKFCHLPERPNSPRTVFFEWSGQLTKGQQAISVELCETAKARENRLVWA VTGAGKTEMLFAVLHQTLQEGGRIALASPRVDVCLELFPRIQAVFPHEAIALLHGNSQES YRYTKLVICTTHQLLKFHQAFDLLIVDEVDSFPFVNNEHLYYGVRNARKKRSSLVYLTAT PTKELRKLLQQKKLAASILPARYHRRPLPVPRRFWVQSWQRLSSKNIKIIAHHLKRLLVR NSVLLFCPSISLIHQLHALIAERFSDKEVVAVYGSDELRLEKVQAMRQQKTDILITTTIL ERGVTFDAVSVIVYGANHRVFTSSTLVQIAGRVDRRQEFNYGEVLFLHDGETRDMKEAIR QIKQMNRLASKRGMLDGL >gi|284795517|gb|ADDQ01000032.1| GENE 88 88846 - 89481 331 211 aa, chain + ## HITS:1 COG:L0319 KEGG:ns NR:ns ## COG: L0319 COG1040 # Protein_GI_number: 15673071 # Func_class: R General function prediction only # Function: Predicted amidophosphoribosyltransferases # Organism: Lactococcus lactis # 13 211 30 216 216 128 38.0 9e-30 MLLRFNKWMSPSLCQHCQAKFQKLPMTGTCFGCSRVSQERYCFDCQRWQLLYPEYSFHNA ALFHYDEGMQEWMERYKFQGDYRLRMCFNEEINFYFQQQSADYIIPVPLSEKRMQERGFN QVIGLLEAADVPYSPFLIRKEENVPQSKKTRKERMQLQQPFAIQKENQKKLKKCSVILVD DIYTTGRTLFHAAAVINDCYPKSLNTFTLAR >gi|284795517|gb|ADDQ01000032.1| GENE 89 89620 - 90171 669 183 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116333275|ref|YP_794802.1| ribosome-associated protein Y (PSrp-1) [Lactobacillus brevis ATCC 367] # 1 183 1 183 186 262 69 8e-69 MFRYNVRGENIEVTEAIRDYVEKKVGKLERYFSDSPEATVHVNLKVYTEKTAKVEVTIPL PYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTKINRKSRETGRNNTKAAVFLVGEETE ETPSELDIVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDAETNGTSIVYRRKDGKYGLI ETD >gi|284795517|gb|ADDQ01000032.1| GENE 90 90427 - 92964 3032 845 aa, chain + ## HITS:1 COG:SPy1805 KEGG:ns NR:ns ## COG: SPy1805 COG0653 # Protein_GI_number: 15675639 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Streptococcus pyogenes M1 GAS # 1 845 1 837 839 1102 68.0 0 MANFLKKMIENDKKELRRLEKIADKIDAHASAMEQLSDEQLREKTDEFKARYQKGETLDE LLPEAFAVVREAAKRVLGLFPYRVQLMGGIVLHDGNIPEMRTGEGKTLTATMPVYLNALS GEGVHVVTVNEYLATRDSNEMGELYNFLGLSVGLNINSKSSDEKREAYNCDITYSTNNEL GFDYLRDNMVVYRSQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKSTALYTRADNF VKRLKEDEDYKIDIQSKTIGLTEAGIEKAEQTFGLDNLYDIENTALTHHLDQALRANYIM LLDIDYVVQDNKVLIVDQFTGRIMDGRRYSDGLHQAIEAKEGVEIEDETKTMATITFQNY FRMYKKLAGMTGTAKTEEEEFREIYNIQVIQIPTNRPIIRDDRPDLLYPTLESKFNAVVE DIKERYHKGQPVLVGTVAVETSELLSDKLNAAKIPHEVLNAKNHFKEAEIIMNAGQKGAV TIATNMAGRGTDIKLGLGVLELGGLAVIGTERHESRRIDNQLRGRAGRQGDPGVSQFYLS LEDDLMKRFGSERIKTFLERMNVQEEDAVIQSKMFTRQVESAQKRVEGNNYDTRKNVLQY DDVMREQREVIYAQRQEVIMEENDLSDVLMGMVKRTIGRVVDSHTQLEKEEWNLDGIVDF AASTLVHEDTISKKDLENKSAEEIKDYLVARAQEVFEEKSQQLNGQEQLLEFEKVVILRV VDTKWTDHIDAMDQLRQSVGLRAYGQNNPLVEYQTEGYSMYNNMVGSIEYEVTRLFMKSE IRQNVQREQVAQGQAEHPETEQDAAAQSNTSAKRQPVRVDKKVGRNDLCPCGSGKKFKNC HGRNA >gi|284795517|gb|ADDQ01000032.1| GENE 91 93041 - 93115 75 24 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MENPEIRTLLDEMTQKITSFRRSL >gi|284795517|gb|ADDQ01000032.1| GENE 92 93159 - 94142 1053 327 aa, chain + ## HITS:1 COG:lin2653 KEGG:ns NR:ns ## COG: lin2653 COG1186 # Protein_GI_number: 16801714 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Listeria innocua # 1 326 1 326 327 454 71.0 1e-127 MGEPGFWDNTETAQKLINETNSLKEKYQQFHQLSEEIDELTVMFELQQEEYDAEIQEELE ERIHLLQERLTTYELSLLLNEPYDHNNALIELHPGAGGTESQDWGSMLLRMYTRWAESHG FQVETLDYQAGDEAGIKSVTLLIKGYNAYGYLKSEKGVHRLVRISPFDSAKRRHTSFCSV DVMPELDDTIEIAINPDDLKIDTYRASGAGGQHINKTESAVRITHIPTGTVVASQAQRSQ LKNREQAMSMLKAKLYQLEMEKKAQEAASLRGEQMEIGWGSQIRSYVFHPYSMVKDHRTN YETGNVQAVMDGDLDGFIDAYLKQRLS >gi|284795517|gb|ADDQ01000032.1| GENE 93 94248 - 94934 357 228 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 215 4 219 223 142 36 1e-32 MIEMKDVMKKYSNGTTAIRNISVEIDQGEFVYVVGPSGAGKSTFIRLMYREEKATKGNLT VAGHDLMKIKNKEVPYLRREIGIVFQDYKLLPKKTVYENVAYAMQVIGRRPREIKKRVME VLDLVGLKHKVRVFPSELSGGEQQRVSIARAIVNTPKVLIADEPTGNLDPENSWEIMKLL DRINAQGTTVVMATHNSTIVNTIRHRVIAIENGRIIRDQVEGEYGYDD >gi|284795517|gb|ADDQ01000032.1| GENE 94 94927 - 95811 997 294 aa, chain + ## HITS:1 COG:L2 KEGG:ns NR:ns ## COG: L2 COG2177 # Protein_GI_number: 15672955 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division protein # Organism: Lactococcus lactis # 1 294 1 311 311 310 50.0 2e-84 MIRTFFSHLFESIKSLKRNGWMTVASASAVTITLVLVGIFMGVIFNATKLADDIEKNVTV SVFVDIGTKQNEMKTLEKQLKGLDNVEDISYSNKDQQLKKIQEQMGDAWNLFEGDSNPLY DVYYVRAKTPEDTKDIAKQAAKFPSVFKADYGGVNSDKIFKIAQTVRTWGLAAAALLLFV AVFLISNTIRITILSRQKEIQIMRLVGAKNSFIRWPFFLEGAWIGLIGAIVPVIIMTLGY HQVYNMFNPQLLRSNYSLIRPEDFIWKVNLLMIATGMIIGSLGSVISMRRFLKI >gi|284795517|gb|ADDQ01000032.1| GENE 95 95987 - 96841 1002 284 aa, chain + ## HITS:1 COG:SP1400 KEGG:ns NR:ns ## COG: SP1400 COG0226 # Protein_GI_number: 15901254 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 1 282 1 285 292 322 56.0 6e-88 MKKRLLLFIGLASILTLTGCAKWIDRGESITAVGSSALQPLVETASEEYQSQNPGRFINV QGGGSGTGLSQVQSGAVDIGNSDLFAEEKKGIKAEDLIDHKVAVVGITPIVNKNVGVKDI SMENLKKIFLGEVTNWKELGGKDQKIVILNRAAGSGTRATFEKWVLGDKTAIRAQEQDSS GMVRSIVSDTPGAISYTAFSYVTDEVATLSIDGVQPTDENVMNNKWIIWSYEHMYTRKNP SDLTKEFLDFMLSDDIQERVIGQLGYIPVSKMEIERDWQGNVIK >gi|284795517|gb|ADDQ01000032.1| GENE 96 96964 - 97884 1012 306 aa, chain + ## HITS:1 COG:SPy1244 KEGG:ns NR:ns ## COG: SPy1244 COG0573 # Protein_GI_number: 15675204 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 2 301 4 303 311 376 74.0 1e-104 MEDVQKKLLTKSKRAKMEQRGKFISFLCIALIVAVVVSIFYFVASKGLATFFKDKINVFD FLFGTNWNPSDIGADGKPMVGALPMIAGSFIVTFLSAIVATPFAIGAAVFMTEISPKKGA KFLQPVIELLVGIPSVVYGFIGLSVIVPFVRSIFGGTGFGILAGTFVLFVMILPTVTTMT VDALKAVPRHYREASLALGATRWQTIYKVVLRAAVPGILTAVVFGMARAFGEALAIQMVI GNAAVMPTSLTTPASTLTSILTMGIGNTIMGTVENNVLWSLALILLLMSLLFNIVIRIIG KRGALK >gi|284795517|gb|ADDQ01000032.1| GENE 97 97884 - 98768 903 294 aa, chain + ## HITS:1 COG:SPy1243 KEGG:ns NR:ns ## COG: SPy1243 COG0581 # Protein_GI_number: 15675203 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 1 294 1 294 295 407 72.0 1e-113 MNAKKADKIATGILYAVSGVIVLILAALLIYILARGIPHISWEFLTQPSRAYQVGGGIGI QLFNSLYLLLITMIISIPISLGAGIYLSEYAKKNWLTDLIRTSIEILSSLPSVVVGLFGF LIFVVQIGYGFSILSGALALTFFNLPLLTRNVEESLKAIHYTQREAGLALGLSRWETVKK VILPEALPGILTGVILSSGRIFGEAAALIYTAGQSAPALDFSNWNPLSVSSPISIFRQAE TLAVHIWKINTEGTMPDGAAVSAGASAVLILVVLLFNFGARFIGNRLYKRMTSA >gi|284795517|gb|ADDQ01000032.1| GENE 98 98785 - 99594 306 269 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 26 256 5 231 245 122 34 9e-27 MKEYNLNDTHLLQLDSQKDPIALHTEDLHVFYGDNEAIKGVDLQFEKNKITALIGPSGCG KSTYLRSLNRMNDGIANSRVTGKIMYKDVDVNTKEVDVYEMRKRIGMVFQRPNPFSKSIY ENITFALKQHGEKDKKKLDEIVETSLKQAALWDQVKDNLNKSALALSGGQQQRLCIARAI AMKPDILLLDEPASALDPISTGTVEETLVNLKDDYTIIIVTHNMQQAARISDYTAFFYMG KVIEYDHTRKIFTRPKIQATEDYVSGHFG >gi|284795517|gb|ADDQ01000032.1| GENE 99 99587 - 100363 284 258 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 1 254 1 263 329 114 27 3e-24 MVRRSKMGKEIISSKDLHLYYGKKEALKGIDLTFNQGELTAMIGPSGCGKSTYLRCLNRM NDLIPDVTITGSVVYKGKDIYGPKTDNVELRKEIGMVFQQPNPFPFSVYENVIYGLRLKG VKDKQVLDEAVETSLKAAAVWEDVKDKLHKSALSLSGGQQQRVCIARVLAVEPDIILLDE PTSALDPVSSGKIENMLLTLKEKYTMIMVTHNMSQASRISDKTAFFLQGDLIEFNDTKKV FLNPKEKQTEDYISGKFG >gi|284795517|gb|ADDQ01000032.1| GENE 100 100378 - 101055 774 225 aa, chain + ## HITS:1 COG:SP1395 KEGG:ns NR:ns ## COG: SP1395 COG0704 # Protein_GI_number: 15901249 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate uptake regulator # Organism: Streptococcus pneumoniae TIGR4 # 1 217 1 217 217 234 57.0 9e-62 MLRTQFEEELLNLHNQFYEMGMMVSSAVHKSVKAYINHDKKLAQEVIDRDIEINDMEVKL EKKSFEMIALQQPVTTDLRMIITVMKASSDLERMADHAVSIAKSTIRLKGETRIPEIEKE ISDMSDYVKKMVDNVLIAYVKTDQKDARMIAQMDDRTNEYFDSIYKHAVEAMKANPETVI SGTDYLHVAQYLERIGDYVTNICEWIVYLATGKITELNSNRDEQF >gi|284795517|gb|ADDQ01000032.1| GENE 101 101265 - 102866 2059 533 aa, chain + ## HITS:1 COG:lin2630 KEGG:ns NR:ns ## COG: lin2630 COG3595 # Protein_GI_number: 16801692 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 213 530 107 414 416 179 32.0 1e-44 MKERERVLELVKKGILTSEEALILLENMATEKDEKQIEKAAEKVDTQNIGTTNKEDQVAD LMNALEKGESEGPTVDSFEENTQDSAEKDRENLERILDELATKANRASAELDEVNAEIAG IKEEIKEVAEEIGTLDTKEELDALTEDEQVQRKDLHVLLAQLEEKLATQSTEKTALEEEL KNIRKEQWKGQWNDTKEKVSSQFSEEWKDQATDTFNQVGGKVAEVGGQVGEFLKKTFNSF SDTMNDNVEWKDIKMKVPGVATTKFEHEFNYPNPQASLIDVKVANGTVVFKTWDQEDVKV EAKIKLYGKMAGDSPMEAFLERSDIDVDDETISFQVPNKRVKADLTFYLPKRTYDHVSVK LLNGNVLVEELTAKDVYTKSTNGTITFKKIDATMLEIEGVNGEIKVLEGTILDNIIETVN GDVSISAAPESLSVSLINGDIRITAKEKTLRRVEASSANGNIKLALPNDLGVEGQVKTNL GSINSRLTDIEVVREKKDRGNQQLHFRRVLEESMAQINASTTTGSIFLKDTDK >gi|284795517|gb|ADDQ01000032.1| GENE 102 102941 - 103264 431 107 aa, chain + ## HITS:1 COG:MA4346 KEGG:ns NR:ns ## COG: MA4346 COG1983 # Protein_GI_number: 20093134 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Putative stress-responsive transcriptional regulator # Organism: Methanosarcina acetivorans str.C2A # 1 61 111 169 183 60 45.0 7e-10 MKRKLTKSPNNVVLTGSLAGIADWLGIDPTIIRVVYVLLSFFSAGFPGILLYIALAVLIP SGRTGSDRGYGHQNPYNRNVRNENPYAANKKQRKEAEKIDDDEWSDF >gi|284795517|gb|ADDQ01000032.1| GENE 103 103264 - 103620 263 118 aa, chain + ## HITS:1 COG:no KEGG:EF1751 NR:ns ## KEGG: EF1751 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 118 1 118 118 154 100.0 8e-37 MTYFQRLVVNTLTFISLSVVFPGMIHVRGIMPAIIAAFVLSILNMLVKPVLTILSLPFTL LTFGLFSFVVNAAILQMTSFFVGEMNFGFSSFWAAVLMAVIMSIVNTIVTDHNLSKYE >gi|284795517|gb|ADDQ01000032.1| GENE 104 103656 - 104618 827 320 aa, chain - ## HITS:1 COG:CAC3468 KEGG:ns NR:ns ## COG: CAC3468 COG0322 # Protein_GI_number: 15896707 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Clostridium acetobutylicum # 5 138 3 139 373 132 48.0 1e-30 MKEYLKEKAHQLPLTPGVYLMKDATDTIIYVGKAKKLKNRVSSYFINSNQHSRKTMRLVK QIIDFDVLHTDTELDALLLECQLIQQYRPRYNRQMNAYEQYSYVSVAVNERQLEIKLLNI PTKENCFGPYSIRRKLNRLKIILDSIYDLVPTNYWHQTFQKESAIPTELFQQELFDFFHN QGREPIKRIAQQMQEAAEKQAFEKAAKLKEDWLFLTRFANQNQRISQANQRDWQLMWLPC QKKIKYYLIYQGLVVATRVVTKQTFQKYSPLELAKKIMPKKPPKTIEHYSKQQVDFLNIL YGYISRHPECHLENLTIEKA >gi|284795517|gb|ADDQ01000032.1| GENE 105 104828 - 105763 1086 311 aa, chain + ## HITS:1 COG:SPy0584 KEGG:ns NR:ns ## COG: SPy0584 COG1493 # Protein_GI_number: 15674671 # Func_class: T Signal transduction mechanisms # Function: Serine kinase of the HPr protein, regulates carbohydrate metabolism # Organism: Streptococcus pyogenes M1 GAS # 1 308 1 306 310 369 61.0 1e-102 MTEVVKIYQLVENLSLEVVYGDEESLNRTIKTGEISRPGLELTGYFNYYSHDRLQLFGSK EITFAERMMPEERLLVMRRLCAKDTPAFIVSRGLEIPEELITAAKENGVSVLRSPISTSR LLGELSSYLDGRLAVRTSVHGVLVDVYGLGVLIQGDSGIGKSETALELIKRGHRLIADDR VDVYQQDELTVVGEPPKILQHLIEIRGIGIIDVMNLFGASAVRGFMQVQLVVYLEAWEKD KKYDRLGSDDAMVEIANVDVPQIRIPVKTGRNVAIIIEVAAMNFRAKTMGYDATKTFEER LTRLIEENSGE >gi|284795517|gb|ADDQ01000032.1| GENE 106 105778 - 106614 775 278 aa, chain + ## HITS:1 COG:BS_lgt KEGG:ns NR:ns ## COG: BS_lgt COG0682 # Protein_GI_number: 16080552 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Prolipoprotein diacylglyceryltransferase # Organism: Bacillus subtilis # 6 270 8 266 269 250 50.0 3e-66 MMLAQVNSIAFRLFGIPVYWYAIIIVSGIALAVWLSSREAVRVGLKEDDVFDFMLWGLPA AIVGARLYYVAFQWQDYVDNPIEIFFTRNGGLAIYGGLIGGGLALFFFTRHRFISTWTFL DIAAPSVILAQAIGRWGNFMNHEAYGPATTRQFLENLHLPTFIIDNMNINGTYHQPTFLY ESVWNVLGFIVLVLLRKKPHFLKEGEVFLGYIIWYSFGRFFIEGLRMDSLYAFSNIRVSQ LLSLVMFVAAIVIVIVRRRNPNLKFYNREKQKKKITTS >gi|284795517|gb|ADDQ01000032.1| GENE 107 106683 - 107705 1420 340 aa, chain + ## HITS:1 COG:L0016 KEGG:ns NR:ns ## COG: L0016 COG0240 # Protein_GI_number: 15673320 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Lactococcus lactis # 3 336 4 337 341 440 67.0 1e-123 MKQKVAVLGPGSWGTALAQVLAENGHEVCIWGNKPEQIDEINTKHTNKHYLPELILPTSI QATTDLATALVDVDAVLFVVPTKAIRSVAQEVAQHLKTKPIIIHASKGLEQGTHKRISEV IAEEIPAEKRQGIVVLSGPSHAEEVAVHDITTITAASENLADAVYVQELFMNDYFRIYTN DDVIGVETGAALKNIIALGAGAIHGLGFGDNAKAAIMTRGLAEISRLGVAMGANPLTFIG LSGVGDLIVTCTSVHSRNWRAGNLLGKGHKLDEVLENMGMIVEGVSTTKAAYELAQQLEV EMPITETIYNVLYNDEDVQQAAKEIMLRDGKTENEFTLDF >gi|284795517|gb|ADDQ01000032.1| GENE 108 107717 - 108613 1270 298 aa, chain + ## HITS:1 COG:SP2092 KEGG:ns NR:ns ## COG: SP2092 COG1210 # Protein_GI_number: 15901907 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Streptococcus pneumoniae TIGR4 # 2 293 4 299 299 457 80.0 1e-128 MKVKKAVIPAAGLGTRFLPATKAMAKEMLPIVDKPTIQFIVEEALASGIEDILIVTGKAK RPIEDHFDSNVELENNLKEKNKTDLLKLVEETTDVNLHFIRQSHPKGLGHAVLQAKAFVG NEPFVVMLGDDLMEDKVPLTKQLMDDYEQTHASTIAVMKVPHEDTSKYGIINPEKEIEKG LYNVENFVEKPKPEEAPSDLAIIGRYLLTPEIFDVLENQKPGAGNEIQLTDAIDTLNKTQ RVFAREFKGERYDVGDKFGFMKTSIEYGLTHPEVKDNLREYIINLGAQLAKKEQPKEK >gi|284795517|gb|ADDQ01000032.1| GENE 109 108791 - 109222 610 143 aa, chain + ## HITS:1 COG:SPy0587 KEGG:ns NR:ns ## COG: SPy0587 COG4768 # Protein_GI_number: 15674673 # Func_class: R General function prediction only # Function: Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain # Organism: Streptococcus pyogenes M1 GAS # 6 140 6 133 135 92 48.0 2e-19 MSGGEIAALIAAVAFVVLVIFLVLVLYKVSQVVSKIEDTIDETNTTIKVVTSDVNVLSRQ VEGLLVKSNELLTDVNQKVATIDPLFTAGADLSESVSELNTSSKHLITKVGTVGKGTAKA GLVSKVGGSAFRAMRSKNKKTNN >gi|284795517|gb|ADDQ01000032.1| GENE 110 109238 - 109825 1135 195 aa, chain + ## HITS:1 COG:BH3244 KEGG:ns NR:ns ## COG: BH3244 COG4980 # Protein_GI_number: 15615806 # Func_class: R General function prediction only # Function: Gas vesicle protein # Organism: Bacillus halodurans # 7 130 9 136 140 62 37.0 6e-10 MAKKGGFFLGAVIGGTAAAVAALLLAPKSGKELRDDLSNQTDDLKNKAQDYTDYAVQKGT ELTEIAKQKAGVLSDQASDLAGSVKEKTKDSLDKAQGVSGDMLDNFKKQTGDLSDQFKKA ADDAQDHAEDLGEIAEDAAEDIYIDVKDSAAAAKETVSAGVDEAKETTKDVPEKAAEAKE DVKDAAKDVKKEFKG >gi|284795517|gb|ADDQ01000032.1| GENE 111 109946 - 111049 1304 367 aa, chain - ## HITS:1 COG:lin1613 KEGG:ns NR:ns ## COG: lin1613 COG0006 # Protein_GI_number: 16800681 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Listeria innocua # 3 367 2 365 365 389 52.0 1e-108 MNQEKIADLKNWMHQEKIDFTYISDPGHIAYFSGYESEPHERVLALFIAADDQSFLFTPA LEVEDAEKSSWTYPVYGYLDSENPWEKIAALLNKRTQGTPRFALEKQALSLARFDQLKTY FPASDFSHDVTPLIEKLQLIKTEPEIQRLLEAGSWADVAFEIGFKAIQAGVAEQEIVAEI EYQLKRQGIRSMSFDTLVLTGKNGASPHGVPGETKIEPHDLVLFDLGVVHNGYCSDATRT VSYLEPSDFQKEIYGIVLEAQLAATEAVKPGVTAGELDDIARGVITKAGYGEYFNHRLGH GIGTTVHEYPSLVHGNDLVIEEGMCFSIEPGIYIPGKVGVRIEDCLHVTKTGSEPFTKTT KELQIIQ >gi|284795517|gb|ADDQ01000032.1| GENE 112 111264 - 112265 1309 333 aa, chain + ## HITS:1 COG:SPy0514 KEGG:ns NR:ns ## COG: SPy0514 COG1609 # Protein_GI_number: 15674618 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 6 333 7 333 333 410 67.0 1e-114 MEKQTITIYDVAREANVSMATVSRVVNGNPNVKPATRKKVLEVIDRLDYRPNAVARGLAS KKTTTVGVIIPDVSNAFFASLARGIDDVATMYKYNIILANSDGDDQKEVTVLNNLLAKQV DGIIFMGHRITDDIRGEFSRSKTPVVLAGSIDPDEQVGSVNIDYTEATKDATATLAKNGN KKIAFVSGALIDPINGQNRMKGYKEALAENGLSYNEGLVFESEYKFKAGINLAERVRNSG ATAAFVTDDELAIGLLDGMLDAGVKVPEEFEIITSNNSLLTEVSRPRLSSITQPLYDIGA VSMRLLTKLMNKEEIEEKTVVLPYGIDQKGSTK >gi|284795517|gb|ADDQ01000032.1| GENE 113 112370 - 114754 2488 794 aa, chain - ## HITS:1 COG:SPy0097 KEGG:ns NR:ns ## COG: SPy0097 COG0744 # Protein_GI_number: 15674320 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Streptococcus pyogenes M1 GAS # 27 774 28 768 770 712 50.0 0 MKNNSSNNKQKPTTSSGGNVFLLILNVIIRVFQSLVVFGVILIVLGGSLGLGIGMGYFAF LVEDTQPPTKEELQKEISDITEVSKMTYADGTPIANIKSDLIRTRINGDQMSPLLKKAII STEDEYFEEHHGVVPKALVRALISDATGIGGSSGGSTLTQQLVKQQILTDETTFKRKANE ILLALRIEKYFSKDEIVTTYLNVSPFGRNNKGENIAGVEEAAKGLFGKSAKDLNLPQAAF IAGLPQSPIVYTPYTNTGALKDDLSLGMKRKDFVLFSMYREKAISQKEYEEAKAYDLKKD FLPTEQANVNTEGYLYYTVLDKAVEIVMDLDMKKAKVNRDDLDQVGLDQYEEQARREIQS QGYTIQSTIDQNIYNTMQTAVANYGYLLDDGTADVNGNTMIETGNILMDNATGRILGFIG GRNFDINQNNHAFNADRQVGSTIKPISVYGPAIDQGIIGSESRLANYPTTYADGREFVNS TNVDLNQFVTVRNALNWSFNIPVVHVNNELRKKMGDDNFSYNHYLSKMNYPASDAWAYES APLGSVETNVVTQTNGFQALANKGKYQKAYMIEKITDNSGHVVYEHKDEGTQVYSPATAS IMNDLLRSVVDSANTTKFKPTLAGLNPHLASADWVGKTGTTDEFKDSWLIVSTPTVTLSS WAGHDLPAPMTMTSGDNNGNYMANLANALYYANPELFGIGQKFELDPSVIKSKVSEFTGE KPGSITYNGAKFNTPGKTTTSYYAKDGAPQSTYKFGIGGTDSNYASYWGNLAPRATTNNN NNNNKNNDNKKNNN >gi|284795517|gb|ADDQ01000032.1| GENE 114 114966 - 116228 727 420 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 3 419 7 415 418 284 39 1e-75 MNSAFFEELKARGLVYQVTDEEALQKQLNEESVKLYIGFDPTADSLHIGHLLPILMLRRF QQNGHVPIALVGGGTGMIGDPSFKDAERSLNTLDTVKAWSESIKGQLSRFIDFEDEKNPA ILANNYDWLGELSLIDFLRDVGKNFTINYMMSKESVKRRIETGISYTEFAYQLLQAYDFL KLYETEGCLLQLGGSDQWGNITSGIELLRREQEVQGFGLTMPLITKADGTKFGKTEGNAV WLDAEKTSPYEFYQFWINTDDRDVVKFLKYFTFLTLDEIATIEEEFTANPGQRAAQKALA KEVTTLVHGEAAYHQAVKISEALFSGDIQSLTAEEIKQGFKDVPTYEVQPEDQLSLVDLL VTSKIEPSKRQAREDVQNGAIYVNGERRQDLAAELTETDKIEGQFTVIRRGKKKYFLLKY >gi|284795517|gb|ADDQ01000032.1| GENE 115 116409 - 117071 641 220 aa, chain + ## HITS:1 COG:no KEGG:EF1738 NR:ns ## KEGG: EF1738 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 220 1 220 220 380 100.0 1e-104 MKSIVEKLNLTKYQQLVILNRPQGEYLSEFASAAQQLPSEPVELIFAFVKTMAEFQEIVS MVIEGQHLVENGLLYVAYPKKGNKMYPTFVHRDEIFPTLQVNEADGYIKGSTLKFNRMVS LDETFTVVGMKNVLKKLAKNQTSSAVGDYVQYLPEIEALVQTEPAAAATFAALTPGYQKE WARYVFSAKRAETRKKRQTEMLVILKEGYKTKALYQQRKK >gi|284795517|gb|ADDQ01000032.1| GENE 116 117071 - 117538 401 155 aa, chain + ## HITS:1 COG:no KEGG:EF1737 NR:ns ## KEGG: EF1737 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 155 1 155 155 300 100.0 9e-81 MAQSIETVTAYIETVEPNWRIAYQQVLDVVSQNLPAGFELTMQYGMPTFVVPLSVFPEGY LNRGDEPLPFISLGATKRQVALYHMGLMGNEAVRSWFQEAYQEQVSTKLNMGKSCLRFTN PKRIPYELIGELVTKITLEEWLQQYQHYQKKKKNY >gi|284795517|gb|ADDQ01000032.1| GENE 117 117549 - 118442 1242 297 aa, chain + ## HITS:1 COG:lin1487 KEGG:ns NR:ns ## COG: lin1487 COG0648 # Protein_GI_number: 16800555 # Func_class: L Replication, recombination and repair # Function: Endonuclease IV # Organism: Listeria innocua # 3 294 4 295 297 432 72.0 1e-121 MLLGSHVSMSGKKMLLGSAEEAASYGSTTFMIYTGAPQNTRRKPIEEMNIEAGQAFMKEH NLSNIVVHAPYIINLGNTIKTENFGFAVDFLRQEIERAQALGATQITLHPGAHVGAGPEA GIKQIVKGLNEVLWKEQIPQIALETMAGKGTEIGRTFDELAAIIDGVTLNDKLSVTLDTC HINDAGYNVKDDFDGVLVEFDKIIGLDRLKVIHVNDSKNPMGSHKDRHANIGFGTIGFEA LNGVVHHEKLTALPKILETPYVGEDKKNKKAPYGFEIAMLKNQTFDPELLEKIQGQN >gi|284795517|gb|ADDQ01000032.1| GENE 118 118636 - 118854 342 72 aa, chain + ## HITS:1 COG:BS_yneF KEGG:ns NR:ns ## COG: BS_yneF COG3763 # Protein_GI_number: 16078854 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 3 72 2 72 72 67 64.0 9e-12 MATGWVVLIAVIALLVGAAGGFFLARKYMQDYFKKNPPVNEDMLRMMMASMGQKPSEKKV RQMMQQMKNQGK >gi|284795517|gb|ADDQ01000032.1| GENE 119 119052 - 120803 209 583 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 352 560 37 251 329 85 28 2e-15 MSIFKKLGWFFKQEKKSYIIGVFSLMMVALVQLVPPKVIGVVVDEIVNKEIRLTKIIVWV ALLIGAGLAQYLFRYIWRMHIWGSAARLEKELRTQLFHHFTKMDSIFYQKYRTGDLMAHA TNDLNAIQNVAGAGILTFADSVITGGTTIIAMVLFVDWRLTLIALLPLPLLAVTSRVLGS KLHDAFRDSQAAFSAINDKTQESITGIKVIKTFGQEKEDLADFTEKIDDAIVKNKRTNFL DALFDPFITLIIGVSYVLTIIIGGRFIMEGTISLGQLVSFIAYIGMLVWPMFAIGRLFNV LERGNASYDRVNELLHEKTHIIERKDAIKTMAQGTISMKIDSFSYPKEETVALENIQFSL QEGETLGIVGKTGAGKTTILKLLMREYDQYQGTISFGKHNIKNYTLDALMGAMGYVPQDH FLFSMTVRDNIRFAKPHLEQAAVEQAAALAFINQEIKAFPEGYDTMVGERGVSLSGGQKQ RISIARALIVEPELLILDDALSAVDAKTEEAILSNLKETRQEKTTIITAHRLSSVMHAKE ILVLDEGKIIERGTHPELLAQKGWYQRMWEKQQLEAKIEGSES >gi|284795517|gb|ADDQ01000032.1| GENE 120 120803 - 122587 193 594 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 355 579 12 233 318 79 27 1e-13 MEEKYQSEWSRELPMKEQLTIVQRLFRFAKPFRRMFYTAILFAFGLSIINILLPRVIQVF MDNYLTPKTATMQVILTFAAIYFFGVIVKSIVWFFQWYLYSMASLKTYQYIRVKLFEKLH TLGMRYFDQTPAGSTVSRVTNDTETLFEFWYVFLMVITGIFAVISSFFAMFQLSPEISFY CLIFLPILLVVIWYYQKFSSKLYRSMREKLSQLNTKLNEYISGMQIIQQFRQEKRLEKEF EETNDDYLKTRVAMIRMNSLLLSPIINLLYTLAIALALTMFGIDALHSPVEAGMIYAFVT YVQAFFNPMTQMMDFLSIFTDGIVAGSRILKIMDTEELTPQQSVGANGEIIRGKIEFRNV TFSYDGKNEVLKNISFVANPGETVALVGHTGSGKSSIINVLMRFYEFYEGQILIDDRDIR DFPMTELREKMGLVLQDAFMFYGDIAGNIRLLNPNITDEQIKQAAEFVQADKFIHTLPNT YHAKVIERGASYSSGQRQLISFARTIVTDPKILVLDEATANIDTETEGLIQEGLAKMRQG RTTIAIAHRLSTIRDANLILVLDKGQIVERGTHETLLAEGGLYADMYQLQSTEV >gi|284795517|gb|ADDQ01000032.1| GENE 121 122743 - 123504 576 253 aa, chain + ## HITS:1 COG:lin0494 KEGG:ns NR:ns ## COG: lin0494 COG0710 # Protein_GI_number: 16799569 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate dehydratase # Organism: Listeria innocua # 1 246 1 245 252 234 50.0 9e-62 MKPVIVKNVRIGEGNPKIVVPIVAPTAEDILAEATASQTLDCDLVEWRLDYYENVADFSD VCNLSQQVMERLGQKPLLLTFRTQKEGGEMAFSEENYFALYHELVKKGALDLLDIELFAN PLAADTLIHEAKKAGIKIVLCNHDFQKTPSQEEIVARLRQMQMRQADICKIAVMPQDATD VLTLLSATNEMYTHYASVPIVTMSMGQLGMISRVTGQLFGSALTFGSAQQASAPGQLSVQ VLRNYLKTFEQNK >gi|284795517|gb|ADDQ01000032.1| GENE 122 123522 - 124016 631 164 aa, chain + ## HITS:1 COG:lin0783 KEGG:ns NR:ns ## COG: lin0783 COG2606 # Protein_GI_number: 16799857 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 8 161 3 156 158 161 53.0 5e-40 MAKKKTQQKTNAMRMVEQHKVPYKEYEFAWSEDHLSAESVAESLGIEKGRIFKTLVTVGN KTGPVVAVIPGNQELDLKKLAKASGNKKVEMLHLKDLEATTGYIRGGCSPIGMKKQFPTY LAEEAQQYSAIIVSAGKRGMQIELAPEAILSLTNGQFAEITTKE >gi|284795517|gb|ADDQ01000032.1| GENE 123 124081 - 124164 77 27 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEFLLHVFNYQINKGKALSKQCYFLLG >gi|284795517|gb|ADDQ01000032.1| GENE 124 124146 - 124553 466 135 aa, chain - ## HITS:1 COG:BS_ypdQ KEGG:ns NR:ns ## COG: BS_ypdQ COG0328 # Protein_GI_number: 16079258 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HI # Organism: Bacillus subtilis # 4 128 5 127 132 98 40.0 3e-21 MLRIYVDAATKGNPGESGGGIVYLTDQSRQQLHVPLGIVSNHEAEFKVLIEALKKAIANE DNQQTVLLHSDSKIVVQTIEKNYAKNEKYQPYLAEYQQLEKNFPLLLIEWLPESQNKAAD MLARQALQKFYPNKK >gi|284795517|gb|ADDQ01000032.1| GENE 125 124654 - 125115 327 153 aa, chain + ## HITS:1 COG:no KEGG:EF1727 NR:ns ## KEGG: EF1727 # Name: ebsA # Def: EbsA protein # Organism: E.faecalis # Pathway: not_defined # 1 153 1 153 153 274 100.0 8e-73 MKKQKFYWQPELASTIIYWSCTFCILFISLILALENNGPYLISNLVMVPFFVFAYLGIAR SFNMTETSLIVRDVLWFRKKALPLSQIEKVTYNEKSIEIFSSEFKEGSKVFLMKKKTIPL FLEALKVKKPELKVAEDHSLGLHKKEEKNKSES >gi|284795517|gb|ADDQ01000032.1| GENE 126 125220 - 125426 277 68 aa, chain - ## HITS:1 COG:lin1992 KEGG:ns NR:ns ## COG: lin1992 COG1278 # Protein_GI_number: 16801058 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Listeria innocua # 1 65 1 65 66 80 66.0 7e-16 MQKGIVKWFDNRKGYGFIVYNEEDEIFVHFTAIEGDGFKSLDENQSVEFEIMEGNRGLQA AHVKKIDN >gi|284795517|gb|ADDQ01000032.1| GENE 127 125605 - 127275 2263 556 aa, chain + ## HITS:1 COG:SP1229 KEGG:ns NR:ns ## COG: SP1229 COG2759 # Protein_GI_number: 15901091 # Func_class: F Nucleotide transport and metabolism # Function: Formyltetrahydrofolate synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 556 1 556 556 769 69.0 0 MKTDINIAQAATLKPIQEIAETIGLSEDSLELYGKYKAKIDFPTLQSLEAQPEGKLILVT SINPTPAGEGKSTVTIGLGDALNQINKKTVIALREPSLGPVMGIKGGATGGGYAQVLPME EINLHFTGDMHAITTANNALAALLDNHLQQGNELKIDSRRVIWKRAVDLNDRALRQVVVG LGGPFQGVPREDGFDITVASEIMAILCLAQNLTDLKERLSRIIVAYNDQREPVTVKDLNV AGALTLLLKDALKPNLVQTIEGTPAFVHGGPFANIAHGCNSILATKTALHLGDYVVTEAG FGGDLGGEKFLDIKVPSLGKAPDAVVIVATIRALKMHGGLAKDQLAEENLPALQKGFANL EKHIQNMQRYDVPVVVAINEFTQDTEKEIQLLKEACQALGVPVELTSVWAQGGAGGTNLA KTVVAEIEADTKQFQPLYNPRQTIEEKIQAIVQTIYGGEQAIFSPKAQKQIADFTKNGWD QLPICMAKTQYSLSDDPQKLGRPEGFTITIRELVPKIGAGFIVALTGDILTMPGLPKVPA ALNMDVDETGQASGLF >gi|284795517|gb|ADDQ01000032.1| GENE 128 127380 - 128084 770 234 aa, chain + ## HITS:1 COG:no KEGG:EF1724 NR:ns ## KEGG: EF1724 # Name: not_defined # Def: CBS domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 234 1 234 234 432 100.0 1e-120 MGERADTFLAHFNRIEKWMRERLNNPVNMGFSEMTRRLSRKEKGQIAQFEEDLLQMAQLR NAIVHERIADDFVIAEPNEWAVQRIETIEQALTKPEKVVPKFAKRVTAFEITTSLETLLT IIAKKQYSQFPIYEKGVFKGLITVRGIGVWFAIESTKGEVHIANRTVRELLASNYKRSNY QFVSIEATVFEVEQMFREQPRLEAVLISKSGHPNGELVGIVRPRDLASIHREKE >gi|284795517|gb|ADDQ01000032.1| GENE 129 128090 - 128566 527 158 aa, chain + ## HITS:1 COG:SP0928 KEGG:ns NR:ns ## COG: SP0928 COG0597 # Protein_GI_number: 15900808 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Streptococcus pneumoniae TIGR4 # 7 147 9 149 153 125 50.0 3e-29 MLVVYFLISALLVGLDQWSKYLTVQNISLGETKEFIPGFLSLTHLRNTGAAWSLLEGKMI FFYVITVIVSVVIIYLLIKNYKKSIWYSVGLSFVLAGAIGNFIDRVRLGYVVDMLQTDFM NFPIFNVADSTLVVGVICIFIYLILDEKAAKEGKNGTN >gi|284795517|gb|ADDQ01000032.1| GENE 130 128553 - 129458 350 301 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 37 285 38 279 285 139 35 8e-32 MEQINVTIQTEKGRIDKVLSEHLPNHSRSQIQQWLKEKHVTVNGETVRANYKVTAGDEIV VTIPEPEVLDMVAEDIPLTIVYEDNDVIVVNKPQGMVVHPSAGHPKGTLVNALLHHADHL SAINDVVRPGIVHRIDKDTSGLLMVAKNDQAHESLAKQLKEKTSLRKYVALVHGVIPHDK GEINAPIGRSKVDRKMQAVIEGGKEAVTHFTVLERFDAFTLVELQLETGRTHQIRVHMKY IGYPLAGDPLYGPKKTLPGNGQFLHAKLLGFTHPTTGEQLVFEAPLPEVFEKTLHQLRNN H >gi|284795517|gb|ADDQ01000032.1| GENE 131 129800 - 130336 882 178 aa, chain + ## HITS:1 COG:BH2541 KEGG:ns NR:ns ## COG: BH2541 COG2065 # Protein_GI_number: 15615104 # Func_class: F Nucleotide transport and metabolism # Function: Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase # Organism: Bacillus halodurans # 6 175 5 177 180 199 63.0 2e-51 MPKKEVVDAVTMKRALTRISYEIIERNKGIQDIVLVGIKTRGIYIAQRLAERLKQLEDID VPVGELDITLYRDDVKDMEEPELHSSDVPVSIEGKEVILVDDVLYTGRTIRAAMDAVMDL GRPRKISLAVLVDRGHRELPIRADYVGKNIPTSKTEEIIVEMEERDGADRIMISKGNE >gi|284795517|gb|ADDQ01000032.1| GENE 132 130353 - 131633 1069 426 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 13 426 5 427 447 416 49 1e-115 MSEKEFRNEDAVLDIKDRPQAFHWVGLSLQHLFTMFGATVLVPILVGIDPGIALVSSGLG TMVYLITTKGKIPAYLGSSFAFIAAMQMLMKSDGYPAIAQGAMTTGLVYLIVSLIIKKIG SDWLDKILPPIVVGPVVMVIGLGLAANAANNAMYNNNVYDFKYIAVALITLGLTIFYNMF FKGFLGLIPILLGIVSGYLVALAFGIIDLTPIKEAAWFALPNFEVPFVQYEPKLYLNAIT TMAPIAFVTMTEHIGHLMVLNKLTKRNFFQDPGLSKTLMGDGLAQIVAGFVGGPPVTSYG ENIGVLAITRVHSVFVIGGAAVFAVALGFVGKLSALILSIPGPVISGISFVLFGVIAASG LKILIDNKINFDKKKNLLIASVILVIGIGGLVFKVGTFELSSMALATVLGIVLNLILPEN ARSEEQ >gi|284795517|gb|ADDQ01000032.1| GENE 133 131647 - 132573 1177 308 aa, chain + ## HITS:1 COG:SPy0832 KEGG:ns NR:ns ## COG: SPy0832 COG0540 # Protein_GI_number: 15674868 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, catalytic chain # Organism: Streptococcus pyogenes M1 GAS # 1 307 1 307 311 424 65.0 1e-118 MIITSERISLKHLLTAEALTDREVMGLIRRAGEFKQGAKWHPEERQYFATNLFFENSTRT HKSFEVAEKKLGLEVIEFEASRSSVQKGETLYDTVLTMSAIGVDVAVIRHGKENYYDELI QSKTIQCSIINGGDGSGQHPTQCLLDLMTIYEEFGGFEGLKVAIVGDITHSRVAKSNMQL LNRLGAEIYFSGPEEWYDHQFDVYGQYVPLDEIVEKVDVMMLLRVQHERHDGKESFSKEG YHLEYGLTNERATRLQKHAIIMHPAPVNRDVELADELVESLQSRIVAQMSNGVFMRMAIL EAILHGKA >gi|284795517|gb|ADDQ01000032.1| GENE 134 132582 - 133865 1506 427 aa, chain + ## HITS:1 COG:BH2538 KEGG:ns NR:ns ## COG: BH2538 COG0044 # Protein_GI_number: 15615101 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Bacillus halodurans # 1 425 1 424 428 483 59.0 1e-136 MKTLIKNGKIIKKENQLIEAALWLENGVIHAIGESFDEADFEQVFDANGQLITPGLVDVH VHFREPGFTYKETIKTGSKAAARGGFTTVCAMPNLNPVPDTAEKLSEVYDLIQKDAVVKV LQYAPITEELRSEVLTNQKALKEAGAFAFTNDGVGVQTAGTMYLAMKEAAALNMALVAHT EDESLLFGGVMHEGEVSKKLGLPGILSATEASQIARDITLAKETGVHYHVCHVSTEESVR VIRDAKKAGIHVTAEVSPHHLILVDEDIPGDEGFWKMNPPLRGLADRQALIDGLLDGTID CIATDHAPHGLEEKQQSFLNAPFGIVGSETAFQLIYTNFVETGIFTLEQVIDWMAVKPAE IFGLNAGTLTIGAPADIAVFDLATAAPIDAEAFESMAVNTPFTGWTVKGKTLMTFVDGAL AWSEEAQ >gi|284795517|gb|ADDQ01000032.1| GENE 135 133868 - 134947 1057 359 aa, chain + ## HITS:1 COG:SPy0833 KEGG:ns NR:ns ## COG: SPy0833 COG0505 # Protein_GI_number: 15674869 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Streptococcus pyogenes M1 GAS # 2 356 3 356 360 566 70.0 1e-161 MKRLLILEDGTVFEGKAFGAEGNVVGEVVFTTGMTGYQEAITDQSFNGQMITFTYPLVGN YGVNRDDYESIAPTCKGVIVKEHARVASNWRQQMTLDEFLKRKGIPGISGIDTRALTRKL RSAGTMKGSIIDAVDDLPHAFDQLKATVMPKNQVAQVSTTKPYPSPGIGRNVVVVDFGLK HSILRELSKRQCNLTVLPYNTTAEEILELSPDGVMLTNGPGDPKDVPEAIEMIQAIQGKV PIFGICLGHQLFSLANGADTYKMKFGHRGLNHPVREIATGRIDFTSQNHGYAVDEATIDP EKLLVTHVEVNDGTVEGVRHRDYPAFTVQYHPDAAPGPHDGLHLFDEFMELMDAWKEQN >gi|284795517|gb|ADDQ01000032.1| GENE 136 134947 - 138129 3544 1060 aa, chain + ## HITS:1 COG:SP1275 KEGG:ns NR:ns ## COG: SP1275 COG0458 # Protein_GI_number: 15901135 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Streptococcus pneumoniae TIGR4 # 1 1060 1 1058 1058 1681 80.0 0 MPKRTDIKKIMVIGSGPIIIGQAAEFDYAGTQACLALKEEGYEVVLVNSNPATIMTDKEI ADHVYIEPITLEFVSRILRKERPDALLPTLGGQTGLNMAMELSESGILDELNVELLGTKL SAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQAVAFAKRIGYPIIVRPAFTLGGTGGG MCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKEIEYEVMRDSADNAIVVCNMENFDPV GIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIRALKIEGGCNVQLALDPHSFNYYVIEVN PRVSRSSALASKATGYPIAKLAAKIAVGLTLDEMKNPVTGTTYAEFEPALDYVVSKIPRW PFDKFEKGARELGTQMKATGEVMAIGRNIEESLLKAVRSLEIGAYHNELAELSHVSDLEL TKKMVHAQDDRLFYLSEAIRRGYSIEELQSLTKIDLFFLDKLLHIIEIETALESHVDNVA VLKEAKQNGFSDRKIAALWGQTEQAIADFRRANQIVPVYKMVDTCAAEFESHTPYFYSTY EVENESNVSKKPSVLVLGSGPIRIGQGVEFDYATVHSVKAIQAAGYEAIIMNSNPETVST DFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQTAINLAEPLTKQGVKILGTTIED LDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPSYVLGGRAMEIV ENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGIMEHIERAGVHS GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHENRVYVIEVNPRASRT VPFLSKITGIPMAQVATKAILGEKLTDLGYQDGLYPESKQVHVKAPVFSFTKLQKVDTYL GPEMKSTGEVMGSDYYLEKALYKAFEASGLHLPSYGAVLFTIADETKEEALEIAKRFSAI GYSLVATEGTADFLAKHQLPVKKVTKISNPEGETVLDVIRNGNAQVVINTMDKNRSSANQ DGFSIRREAVEHGIPLFTSLDTANAILKVLESRAFTTETI >gi|284795517|gb|ADDQ01000032.1| GENE 137 138237 - 139028 849 263 aa, chain + ## HITS:1 COG:SP0963 KEGG:ns NR:ns ## COG: SP0963 COG0543 # Protein_GI_number: 15900840 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases # Organism: Streptococcus pneumoniae TIGR4 # 8 263 1 250 250 261 48.0 7e-70 MQRKQEMMTIVAQKQLAPRIYQLDLQGELVKEMTRPGQFVHIKVPRADLLLRRPISINQI DHSNETCRLIYRVEGAGTEVFATMKAGEQLDILGPLGNGFDITTVAAGQTAFIVGGGIGI PPLYELSKQLNEKGVKVIHFLGYASKEVAYYQQEFMALGETHFATDDGSFGAHGNVGRLL SEALAKGRIPDAVYACGANGMLKAIDSLFPTHPHVYLSLEERMACGIGACYACVCHKKGD TTGAKSVKVCDEGPIFKASEVIL >gi|284795517|gb|ADDQ01000032.1| GENE 138 139025 - 139963 1035 312 aa, chain + ## HITS:1 COG:L182555 KEGG:ns NR:ns ## COG: L182555 COG0167 # Protein_GI_number: 15673328 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Lactococcus lactis # 4 309 5 311 311 443 74.0 1e-124 MMKNPLAVSIPGLTLKNPIIPASGCFGFGEEYANYYDLDQLGSIMIKATTPQARYGNPTP RVAETPSGMLNAIGLQNPGLEVVMQEKLPKLEKYPNLPIIANVAGACEEDYVAVCAKIGQ APNVKAIELNISCPNVKHGGIAFGTDPEVAFQLTQAVKKVASVPIYVKLSPNVTDIVPIA QAIEAGGADGFSMINTLLGMRIDLKTRKPILANQTGGLSGPAIKPVAIRLIRQVASVSQL PIIGMGGVQTVDDVLEMFMAGASAVGVGTANFTDPYICPKLIDGLPKRMEELGIESLEQL IKEVREGQQNAR >gi|284795517|gb|ADDQ01000032.1| GENE 139 139953 - 140666 882 237 aa, chain + ## HITS:1 COG:L181692 KEGG:ns NR:ns ## COG: L181692 COG0284 # Protein_GI_number: 15673327 # Func_class: F Nucleotide transport and metabolism # Function: Orotidine-5'-phosphate decarboxylase # Organism: Lactococcus lactis # 3 235 4 236 237 283 62.0 1e-76 MHDRPIIALDFPTQKEVAVFLEKFPKEEALFVKVGMELFYAEGPAIVRWLKEQGHDVFLD LKLHDIPNTVEKAMTNLAKLGVAITNVHAAGGVRMMQAAKEGLIKGTQPGAKVPELIAVT QLTSTSEEEMHHDQLINVPLETSVIHYAKCAEKAGLDGVVCSALEARGIQEATKQTFICL TPGIRPAGSAVGDQQRVVTPQHAREIGSTYIVVGRPITQAENPYEAYQEIKKDWSEK >gi|284795517|gb|ADDQ01000032.1| GENE 140 140668 - 141300 829 210 aa, chain + ## HITS:1 COG:lin1945 KEGG:ns NR:ns ## COG: lin1945 COG0461 # Protein_GI_number: 16801011 # Func_class: F Nucleotide transport and metabolism # Function: Orotate phosphoribosyltransferase # Organism: Listeria innocua # 4 210 3 209 209 272 66.0 3e-73 MTKVAKKIAKDLLDIEAVFLNPNEPFTWASGIKSPIYCDNRITMSYPAVRKEIAEGLAAK IKETFPEVEVIAGTATAGIPHAAWVADILGLPMVYIRSKAKDHGKGNQIEGRISEGQKMV VIEDLISTGGSVLEAAEAAEREGATVLGVAAIFTYELPKGTANFADKQMTLLTLTNYSTL IDAALEANYIEEKDVTLLQEWKKDPENWGK >gi|284795517|gb|ADDQ01000032.1| GENE 141 141498 - 142196 536 232 aa, chain + ## HITS:1 COG:BH0360 KEGG:ns NR:ns ## COG: BH0360 COG3338 # Protein_GI_number: 15612923 # Func_class: P Inorganic ion transport and metabolism # Function: Carbonic anhydrase # Organism: Bacillus halodurans # 8 228 47 270 275 126 34.0 4e-29 MKKIKNMDVEWSYTGNDGPEHWHTLCDWFAEGAKFAYQSPIALEKESAETVNSQITFHYK KEEFTEKEFKNTFHFVPPNTESYVMFENVAYHLTDIHFHMPSEHLLSGKQYPLEFHLVHM NDAGENLVVGCLFTITEEENRFSEANHPMDWENGTHQQWFNPSIFLPEERLHYHYVGSLT TPPTKGPVKWFVFDTIQKMDQAFLNKIKEGMLAFNNRPLQPLNGRKIYFSND >gi|284795517|gb|ADDQ01000032.1| GENE 142 142215 - 143144 943 309 aa, chain + ## HITS:1 COG:SPy0824 KEGG:ns NR:ns ## COG: SPy0824 COG0583 # Protein_GI_number: 15674863 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 1 298 1 298 304 230 41.0 3e-60 MNIQQMKYVAAIANNGSFREAAKKLFITQPSLSNSIRELEEELGISLFLRTNKGAFLTEE GMVFLEQAEKVLVQMELLENRYRETVTSERFSISSQHYDFLGEVIAKVLKKYGDQYKDFR VFETTTLKVIEDVKGFHSELGIIYLNEQNSVSIERYLEQANLAYEVISTFNTHIFLGNHH PLAKQKEIHLEELVPYPQVRFNQEGSNFSYFSEDLVEIPEQESVIHTTDRGTLMNLLVET NAYASGSGVVTGFTKKEIRLVPLAPALENRICLLFPKNREISPIGRYFIKELKALFKKEV DTKTFSTKE Prediction of potential genes in microbial genomes Time: Sun May 15 12:43:11 2011 Seq name: gi|284795516|gb|ADDQ01000033.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont74.1, whole genome shotgun sequence Length of sequence - 1522 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - 5S_RRNA 3 - 118 100.0 # AE016830 [D:253255..253370] # 5S ribosomal RNA # Enterococcus faecalis V583 # Bacteria; Firmicutes; Lactobacillales; Enterococcaceae; Enterococcus. - LSU_RRNA 219 - 1522 99.0 # AE016830 [D:250246..253154] # 23S ribosomal RNA # Enterococcus faecalis V583 # Bacteria; Firmicutes; Lactobacillales; Enterococcaceae; Enterococcus. Prediction of potential genes in microbial genomes Time: Sun May 15 12:43:16 2011 Seq name: gi|284795515|gb|ADDQ01000034.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont75.1, whole genome shotgun sequence Length of sequence - 13837 bp Number of predicted genes - 13, with homology - 13 Number of transcription units - 7, operones - 5 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 32 - 859 878 ## EF0811 hypothetical protein 2 1 Op 2 . - CDS 863 - 2587 1192 ## COG4289 Uncharacterized protein conserved in bacteria - Prom 2798 - 2857 7.6 - Term 2839 - 2888 14.2 3 2 Op 1 . - CDS 2981 - 3229 354 ## COG2261 Predicted membrane protein - Prom 3275 - 3334 5.3 4 2 Op 2 . - CDS 3336 - 4967 2071 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 4998 - 5057 3.6 + Prom 5642 - 5701 3.7 5 3 Op 1 34/0.000 + CDS 5802 - 6443 834 ## COG0765 ABC-type amino acid transport system, permease component 6 3 Op 2 16/0.000 + CDS 6456 - 7091 387 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 7 3 Op 3 . + CDS 7105 - 7923 928 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain + Term 7942 - 7985 9.3 - Term 7930 - 7973 6.3 8 4 Op 1 . - CDS 7979 - 8794 652 ## COG3177 Uncharacterized conserved protein 9 4 Op 2 . - CDS 8906 - 9199 271 ## gi|257083723|ref|ZP_05578084.1| fic family protein - Prom 9300 - 9359 9.5 10 5 Op 1 . + CDS 9447 - 9890 458 ## EF0803 hypothetical protein + Prom 9897 - 9956 3.7 11 5 Op 2 . + CDS 9987 - 10211 246 ## EF0802 hypothetical protein + Term 10215 - 10254 3.6 - Term 10194 - 10251 4.1 12 6 Tu 1 . - CDS 10267 - 12681 3095 ## COG0495 Leucyl-tRNA synthetase - Prom 12731 - 12790 5.7 - Term 12834 - 12880 4.0 13 7 Tu 1 . - CDS 13085 - 13837 729 ## COG1388 FOG: LysM repeat Predicted protein(s) >gi|284795515|gb|ADDQ01000034.1| GENE 1 32 - 859 878 275 aa, chain - ## HITS:1 COG:no KEGG:EF0811 NR:ns ## KEGG: EF0811 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 275 1 275 275 551 98.0 1e-155 MIKIELKNKDNQIITGRIDHEKPEAPLVAEGDTLAVLAIKQYLYQVGDKIVVTYTGATPY LMVQLDETLAPSLIYLKEKVWEYQIPLEESARKAFVDTAFHSARHQIMVRQAHTFEKDNY QNLSMNTHDQKEYSGAYPHAYANVETRDDAVFFAKNAIDSKFGNLSHGSYPFASWGINQQ KEAQLTIDFGRPVETDWIRLLFRADYPHDSYWEEVTLAFSDGEERVVATTNTACFQEIKF PMKTTQTLTLKCLRKALDSSPFPALTQIEVFGRNK >gi|284795515|gb|ADDQ01000034.1| GENE 2 863 - 2587 1192 574 aa, chain - ## HITS:1 COG:SMb20536 KEGG:ns NR:ns ## COG: SMb20536 COG4289 # Protein_GI_number: 16264263 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Sinorhizobium meliloti # 54 567 60 572 617 372 37.0 1e-102 MESLKSNLFLTREAYLEAFETIMTPLKTAILTSEKPGVNFGSSGAVYDQQHAEMEALIRP LWGIGPYWVTCKDDVLRDAYVEKLIAGTDPSSPDYWGDIVDYDQYIVEAAALSLTLLLHK TYFWSCFSEKQQENIMVWLNKALGCKIPKNNWTFFKVLIRLALEGCGQVINQAELEEELA LIERMYLGDGWYMDGKTTQRDYYISFAFHYYSLIYVKFMRERDPVRAKRFTERAVMFAQD YLYYFDEEGEALPYGRSQTYRFAQGAFFAALIFAEVEALPWGQIKTLLAKHLHCWMQQTI FTYDGRLSIGYHYENLVMAEGYNAPGSPYWAFKTFLLLAVDQDHPFWRAEPLAIKREEKR LIEKGNMLLIHPKMKTHVLGYPAGLWLENQAHAAAKYSKFVYSSRFGFSVPKAGARYEEG AFDNVLAVSRDGEYFRVKGKVHDFYLTEEQVYYKWLPFQEVEIETTIYPFGEWHVRVHEI VTSVPLKVREGGFSLPLLGKFSEKELGKEWARVDSGELCSQIIAIEGYDHAGILQPEPNT SLFFPRTSLPYLQKELPIGTHRLICLVGGVTREE >gi|284795515|gb|ADDQ01000034.1| GENE 3 2981 - 3229 354 82 aa, chain - ## HITS:1 COG:SA0360 KEGG:ns NR:ns ## COG: SA0360 COG2261 # Protein_GI_number: 15926075 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 78 1 78 83 57 56.0 7e-09 MFSFLWALIVGGIIGAIAGAILGKDVPGGIIGNIIVGFLGSWVASLLLPSLGPVIGGFPI ISALLGAIICIAIYSFIVNRKA >gi|284795515|gb|ADDQ01000034.1| GENE 4 3336 - 4967 2071 543 aa, chain - ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 1 542 1 549 549 391 39.0 1e-108 MKQKKWLIGLIALGLVLAACGSGGSKTTSNETATQKINVASGGELSTLDSAHYTDVYSSD MIGQVVEGLYRQDKNGDPELAMAKAEPQVSEDGLVYTFKLREAKWTNGDPVKAGDFVVAF RNVVDPAYGSSSSNQMDIFKNGRAVREGQATMEEFGVKAIDDQTLELTLENPIPYLAQVL VGTPFMPKNEAFAKEKGTAYGTSADNFVGNGPFVISGWDGNSETWKLKKNDHYWDKEHVK LNEIDVQVVKEIGTGANLFDNGDLDYTVLADTYALQYKESKQAHFVPKAMVGYLSPNHRR EITGNEHVRKAFLQAIDKETFAKEILGDGSTALNGFVPANFAKNPDTGEDFRKENGDLLP YNIKEAQANWTKAKEELGKDKIELELISADSAIAKKTIEFVQGQLQQNLPGLTIKLKSLP LQNRLDLQTAGNYDLAFGTWTPDYADPINFLEFYDSKSGLNTSGYNDSAYDAGLQKVRKD YANEPEKRWNELLSLEKTLIEKDAGVLPLFQGAIGYLKSDRLQGLQVFSFGRTVSYRLAY VEE >gi|284795515|gb|ADDQ01000034.1| GENE 5 5802 - 6443 834 213 aa, chain + ## HITS:1 COG:lin1851 KEGG:ns NR:ns ## COG: lin1851 COG0765 # Protein_GI_number: 16800918 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Listeria innocua # 1 213 1 213 213 237 67.0 1e-62 MDYILEILPALVSGAGMTLKVFFFTLLGSIPLGIIIAFILQSSFKPLRYLINLYIWLMRG TPLLLQLIFVFYGLPLIGIVFERYDAALFAFILNYAAYFAEIFRGGIQAIPQGQYEAAKV LRLTRFQTVTRIILPQVVKIVLPSVGNEIINLVKDTSLIYVLGLGDLLRAGKIAMSRDVT LVPLALVGVIYLLFTAILTVASKKIEKFYQYYK >gi|284795515|gb|ADDQ01000034.1| GENE 6 6456 - 7091 387 211 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 208 1 213 245 153 37 6e-37 MLTIKNLTKHFDNRTIIDHLNLEIPEGKILTIVGPSGGGKTTLLRCLAGLETIDSGELLL DGVPFNPAEMDNADQVVGVVFQDFQLFPHLSVLENITLAPTLVLKEEKAKSQQEALELLE KLGLAGKEKLYPYQLSGGQKQRVALARALAMKPKVLGYDEPTSALDPALRQQLEEVILDL RKQGMTQIVVTHDMAFAEKIADNLLTVAPVQ >gi|284795515|gb|ADDQ01000034.1| GENE 7 7105 - 7923 928 272 aa, chain + ## HITS:1 COG:lin1849 KEGG:ns NR:ns ## COG: lin1849 COG0834 # Protein_GI_number: 16800916 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Listeria innocua # 4 268 2 266 271 289 54.0 3e-78 MKKKYSLALLVICCSLLLFAGCGKRKSNEDQWTRINEEKRIIIGLDDSFVPMGFQDKSGK IVGFDVDLAKAVFKLYGISVDFQPIDWSMKETELQNQTIDLIWNGYTKTSERAEKVQFTQ PYMTNDQVLVSLKEKNIATASDMQGKILGVQNGSSGYDGFESQPDVLKKFVKDQTPILYD GFNEAFLDLKSGRIDGLLIDRVYANYYLSHEDNLKNYTISHVGYDNEDFAVGVRKSDNQL VQKINTAFETLRKDGTLSKISQKWFGEDVTNH >gi|284795515|gb|ADDQ01000034.1| GENE 8 7979 - 8794 652 271 aa, chain - ## HITS:1 COG:FN0017 KEGG:ns NR:ns ## COG: FN0017 COG3177 # Protein_GI_number: 19703369 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Fusobacterium nucleatum # 13 270 154 415 415 147 35.0 2e-35 MYKGIVTDKMLKIETLGQFREIYDELFKADIQEEDYPDGLLFRKSVVYISDKDKVVHQGS SNEESIIADLEKLILFMNQTALPSLLKCCISHYYFEYIHPFYDGNGRMGRFLMSNYLSRK LDPLTGLTVSNAVIHNKRKYEKAFSEVTNPRNRGEVTLFVQTMYEFILLGQTEILEELRT WTNQLKRAKQWLKHSELPEDECSVLFLLIQAHMFRNGTESVSIKEIQENQNWSYGKVKRI TETLEKQAYIQVQGKKPKTYRITQQFEETIG >gi|284795515|gb|ADDQ01000034.1| GENE 9 8906 - 9199 271 97 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|257083723|ref|ZP_05578084.1| ## NR: gi|257083723|ref|ZP_05578084.1| fic family protein [Enterococcus faecalis Fly1] # 1 97 1 97 406 169 100.0 3e-41 MTYKLLKVDFYKNRDSFEKKYQERLNFDSTLQTKLFIHPFDKEERKTKETYELFYVPLLQ HSVLQEKIMKNSQEIMRYIHKLPKIVQKNIFFYQLIE >gi|284795515|gb|ADDQ01000034.1| GENE 10 9447 - 9890 458 147 aa, chain + ## HITS:1 COG:no KEGG:EF0803 NR:ns ## KEGG: EF0803 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 147 1 147 147 219 98.0 3e-56 MPTNKKEGMLFTTLMCFLMVFGMSTYNLLLHGEFSLYALSKGLLPGFIVAFILDVFIVGV LAKKIAFSLPFNKEKRLLLILTISSLMIIGMVTCMSLFGLLMESQTLSLSAYFQAWGLNF IVALPYQLLIVGPFSRMILTNYQQRQT >gi|284795515|gb|ADDQ01000034.1| GENE 11 9987 - 10211 246 74 aa, chain + ## HITS:1 COG:no KEGG:EF0802 NR:ns ## KEGG: EF0802 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 74 23 96 96 103 97.0 1e-21 MKKYRISLFLGLISLLLFMTSILVGSTLSSDGLLKEPAFFCTPLGYFFLFIALLSVITIT CKEHMNQKGKTKQP >gi|284795515|gb|ADDQ01000034.1| GENE 12 10267 - 12681 3095 804 aa, chain - ## HITS:1 COG:lin1769 KEGG:ns NR:ns ## COG: lin1769 COG0495 # Protein_GI_number: 16800837 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Leucyl-tRNA synthetase # Organism: Listeria innocua # 1 804 1 803 803 1271 75.0 0 MSYNHKEIEKKWQKYWAKNNCFNTLDDPNKEKFYALDMFPYPSGQGLHVGHPEGYTATDI LSRMKRAQGYNVLHPMGWDAFGLPAEQYALDTGNDPAEFTKKNIETFRRQINSLGFSYDW NREINTTDPEYYKWTQWIFTKLYEKGLAYEAEVAVNWVPELGTVISNEEVIDGKSERGGY DVVRRPMRQWMLKITAYADRLLEDLELVDWPESIKDMQRNWIGRSEGANVTFKVAGTEES FTVFTTRPDTLFGATYTVLAPELELVKKITTPEQTAAVEAYIEETSKKSDLNRTDLAKEK TGVFTGAYAINPVNGQEIPIWIGDYVLASYGTGAIMAVPAHDERDYEFAKTFGIDILPVI AGGDITTEAYTGDGPHINSDFLNGLNKAEAIAKMNEWLEENHVGKKEVSYRLRDWLFSRQ RYWGEPIPVIHWEDGTTTTVPESELPLRLPVTSDIRPSGTGESPLANIDEWVNVVDPETG MKGKRETNTMPQWAGSSWYYLRFIDPHNKNEIADFEKLKRWLPVDIYIGGAEHAVLHLLY ARFWHKFLYDIGVVPTKEPFQKLYNQGMILGENNEKMSKSRGNVVNPDDVVAKYGADTLR LYEMFMGPLDASIAWNENGLEGSRKFLDRVWRLIVDEEGKMRDRITTINDGRLTKVYHQT VKKVTEDMANLHFNTAISQLMVFVNEANKVDALPYEYVEGFVQLLAPIAPHIGEELWQIL GNEESLTYVPWPTYDEAALVEDEVEVVFQVNGKLRGKQNVARGLSKEELEQIAMNHEAVK EFIEGKTVRKVIAVPDKLVNIVAN >gi|284795515|gb|ADDQ01000034.1| GENE 13 13085 - 13837 729 250 aa, chain - ## HITS:1 COG:lin2838_2 KEGG:ns NR:ns ## COG: lin2838_2 COG1388 # Protein_GI_number: 16801898 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: FOG: LysM repeat # Organism: Listeria innocua # 17 249 3 253 254 126 37.0 4e-29 ANNNQSGTNTYYTIKSGDTLNKIAAQYGVSVANLRSWNGISGDLIFAGQKIIVKKGTSGN TGGSSNGGSNNNQSGTNTYYTIKSGDTLNKISAQFGVSVANLQAWNNISGSLIFAGQKII VKKGANSGSTNTNKPTNNGGGATTSYTIKSGDTLNKISAQFGVSVANLRSWNGIKGDLIF AGQTIIVKKGASAGGNASSTNSASGKRHTVKSGDSLWGLSMQYGISIQKIKQLNGLSGDT IYIGQTLKVG Prediction of potential genes in microbial genomes Time: Sun May 15 12:44:03 2011 Seq name: gi|284795514|gb|ADDQ01000035.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont77.1, whole genome shotgun sequence Length of sequence - 107923 bp Number of predicted genes - 105, with homology - 102 Number of transcription units - 50, operones - 27 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 51 - 152 63 ## - Prom 279 - 338 8.0 + Prom 30 - 89 9.2 2 2 Tu 1 . + CDS 151 - 882 689 ## COG0546 Predicted phosphatases + Term 1073 - 1108 0.2 - Term 856 - 897 6.2 3 3 Op 1 . - CDS 906 - 1199 161 ## gi|256961229|ref|ZP_05565400.1| predicted protein 4 3 Op 2 . - CDS 1111 - 1920 869 ## COG1512 Beta-propeller domains of methanol dehydrogenase type 5 3 Op 3 . - CDS 1917 - 3062 882 ## EF2478 hypothetical protein - Term 3103 - 3145 5.3 6 4 Tu 1 . - CDS 3166 - 4398 1320 ## COG4260 Putative virion core protein (lumpy skin disease virus) - Prom 4536 - 4595 8.8 + Prom 4518 - 4577 4.5 7 5 Tu 1 . + CDS 4605 - 6647 2393 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 + Term 6663 - 6709 8.7 + Prom 6676 - 6735 8.0 8 6 Op 1 20/0.000 + CDS 6763 - 7482 281 ## PROTEIN SUPPORTED gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase 9 6 Op 2 2/0.091 + CDS 7466 - 8008 291 ## PROTEIN SUPPORTED gi|58336726|ref|YP_193311.1| ribosomal protein ala-acetyltransferase 10 6 Op 3 9/0.000 + CDS 8016 - 8480 195 ## PROTEIN SUPPORTED gi|119946836|ref|YP_944516.1| ribosomal-protein-alanine acetyltransferase 11 6 Op 4 . + CDS 8477 - 9523 713 ## PROTEIN SUPPORTED gi|229232313|ref|ZP_04356740.1| (SSU ribosomal protein S18P)-alanine acetyltransferase + Term 9760 - 9812 18.0 + Prom 9762 - 9821 11.3 12 7 Op 1 . + CDS 9842 - 11533 2204 ## COG0018 Arginyl-tRNA synthetase + Prom 11592 - 11651 5.4 13 7 Op 2 . + CDS 11689 - 12189 613 ## COG1418 Predicted HD superfamily hydrolase + Term 12196 - 12229 3.1 - Term 12182 - 12215 3.1 14 8 Tu 1 . - CDS 12271 - 12594 314 ## EF2469 Cro/CI family transcriptional regulator - Prom 12760 - 12819 7.5 + Prom 12672 - 12731 6.8 15 9 Tu 1 . + CDS 12773 - 13021 274 ## EF2467 hypothetical protein + Term 13144 - 13191 8.2 + Prom 13146 - 13205 4.3 16 10 Op 1 . + CDS 13232 - 14497 1277 ## COG0038 Chloride channel protein EriC 17 10 Op 2 2/0.091 + CDS 14547 - 14825 450 ## COG4476 Uncharacterized protein conserved in bacteria 18 10 Op 3 1/0.091 + CDS 14826 - 15608 1043 ## COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family + Term 15614 - 15655 3.4 + Prom 15716 - 15775 6.4 19 11 Op 1 . + CDS 15829 - 17664 2065 ## COG1217 Predicted membrane GTPase involved in stress response + Term 17672 - 17719 -0.4 20 11 Op 2 . + CDS 17739 - 18392 518 ## COG0584 Glycerophosphoryl diester phosphodiesterase + Term 18578 - 18623 1.4 + Prom 18599 - 18658 11.0 21 12 Tu 1 . + CDS 18870 - 20639 2083 ## COG0514 Superfamily II DNA helicase + Term 20763 - 20818 9.5 + Prom 20782 - 20841 10.0 22 13 Op 1 3/0.091 + CDS 20866 - 21171 436 ## COG4838 Uncharacterized protein conserved in bacteria 23 13 Op 2 4/0.000 + CDS 21175 - 22383 1289 ## COG0772 Bacterial cell division membrane protein 24 13 Op 3 . + CDS 22416 - 25844 4150 ## COG1038 Pyruvate carboxylase 25 13 Op 4 2/0.091 + CDS 25861 - 26985 967 ## COG2340 Uncharacterized protein with SCP/PR1 domains 26 13 Op 5 3/0.091 + CDS 26982 - 27416 220 ## PROTEIN SUPPORTED gi|163764796|ref|ZP_02171849.1| ribosomal protein S17 27 13 Op 6 2/0.091 + CDS 27406 - 27756 431 ## COG4471 Uncharacterized protein conserved in bacteria + Term 27758 - 27821 16.1 + Prom 27765 - 27824 7.3 28 14 Op 1 14/0.000 + CDS 27855 - 28409 689 ## COG0742 N6-adenine-specific methylase 29 14 Op 2 4/0.000 + CDS 28411 - 28902 334 ## PROTEIN SUPPORTED gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 30 14 Op 3 . + CDS 28907 - 29959 471 ## PROTEIN SUPPORTED gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 + Term 29965 - 30018 17.1 + Prom 29969 - 30028 5.8 31 15 Op 1 4/0.000 + CDS 30055 - 30699 676 ## COG1555 DNA uptake protein and related DNA-binding proteins + Prom 30702 - 30761 4.7 32 15 Op 2 4/0.000 + CDS 30822 - 31325 479 ## COG2131 Deoxycytidylate deaminase + Term 31335 - 31377 3.1 + Prom 31402 - 31461 3.9 33 15 Op 3 4/0.000 + CDS 31648 - 33624 1173 ## COG2333 Predicted hydrolase (metallo-beta-lactamase superfamily) 34 15 Op 4 . + CDS 33682 - 34710 1138 ## COG1466 DNA polymerase III, delta subunit + Term 34711 - 34772 20.1 - Term 34698 - 34758 21.7 35 16 Tu 1 . - CDS 34762 - 35703 1267 ## COG1893 Ketopantoate reductase - Prom 35737 - 35796 6.7 + Prom 35744 - 35803 4.2 36 17 Tu 1 . + CDS 35893 - 36429 429 ## COG1607 Acyl-CoA hydrolase + Term 36435 - 36479 6.2 - Term 36468 - 36510 4.5 37 18 Tu 1 . - CDS 36516 - 36830 509 ## PROTEIN SUPPORTED gi|227519840|ref|ZP_03949889.1| ribosomal protein S20 - Prom 36905 - 36964 5.0 + Prom 36919 - 36978 7.3 38 19 Op 1 21/0.000 + CDS 36999 - 38012 953 ## COG0306 Phosphate/sulphate permeases 39 19 Op 2 . + CDS 38025 - 38648 811 ## COG1392 Phosphate transport regulator (distant homolog of PhoU) 40 19 Op 3 . + CDS 38667 - 39452 764 ## COG3394 Uncharacterized protein conserved in bacteria + Term 39455 - 39494 9.3 - Term 39436 - 39487 16.2 41 20 Tu 1 . - CDS 39491 - 40321 870 ## COG1968 Uncharacterized bacitracin resistance protein - Prom 40359 - 40418 10.8 + Prom 40363 - 40422 8.0 42 21 Tu 1 . + CDS 40503 - 40997 670 ## COG2190 Phosphotransferase system IIA components + Term 41005 - 41046 6.7 + Prom 41015 - 41074 9.8 43 22 Op 1 2/0.091 + CDS 41148 - 42257 1105 ## COG3589 Uncharacterized conserved protein 44 22 Op 2 9/0.000 + CDS 42232 - 43122 1241 ## COG2103 Predicted sugar phosphate isomerase 45 22 Op 3 3/0.091 + CDS 43145 - 44599 1918 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Term 44606 - 44649 4.1 + Prom 44601 - 44660 6.1 46 22 Op 4 . + CDS 44687 - 45535 955 ## COG1737 Transcriptional regulators + Term 45543 - 45591 15.1 - Term 45531 - 45579 11.3 47 23 Op 1 1/0.091 - CDS 45585 - 46295 843 ## COG0406 Fructose-2,6-bisphosphatase 48 23 Op 2 . - CDS 46336 - 46962 770 ## COG0491 Zn-dependent hydrolases, including glyoxylases - Prom 47093 - 47152 7.8 + Prom 47075 - 47134 11.7 49 24 Op 1 4/0.000 + CDS 47182 - 48567 1696 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 50 24 Op 2 1/0.091 + CDS 48571 - 49902 358 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 49982 - 50023 3.1 + Prom 49905 - 49964 8.8 51 25 Tu 1 . + CDS 50044 - 51021 1233 ## COG0516 IMP dehydrogenase/GMP reductase + Term 51046 - 51105 17.7 + Prom 51076 - 51135 5.9 52 26 Op 1 . + CDS 51183 - 51515 214 ## PROTEIN SUPPORTED gi|18309686|ref|NP_561620.1| 30S ribosomal protein 53 26 Op 2 . + CDS 51512 - 52540 1085 ## EF2427 hypothetical protein + Term 52565 - 52616 11.3 + Prom 52593 - 52652 3.2 54 27 Tu 1 . + CDS 52675 - 54126 1401 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs + Prom 54157 - 54216 9.5 55 28 Op 1 . + CDS 54247 - 55971 2338 ## COG1109 Phosphomannomutase + Term 56013 - 56066 14.1 56 28 Op 2 . + CDS 56078 - 56860 1002 ## COG0345 Pyrroline-5-carboxylate reductase + Term 56866 - 56919 9.0 + Prom 56919 - 56978 3.6 57 29 Op 1 . + CDS 56998 - 57285 368 ## COG0640 Predicted transcriptional regulators 58 29 Op 2 11/0.000 + CDS 57337 - 58629 1390 ## COG0460 Homoserine dehydrogenase 59 29 Op 3 19/0.000 + CDS 58632 - 59687 1554 ## COG0498 Threonine synthase 60 29 Op 4 . + CDS 59684 - 60547 829 ## COG0083 Homoserine kinase + Term 60554 - 60595 9.2 - Term 60542 - 60583 9.2 61 30 Tu 1 . - CDS 60590 - 61447 923 ## COG1806 Uncharacterized protein conserved in bacteria - Prom 61477 - 61536 6.5 + Prom 61436 - 61495 5.4 62 31 Tu 1 . + CDS 61552 - 61986 439 ## COG0735 Fe2+/Zn2+ uptake regulation proteins + Prom 62003 - 62062 3.6 63 32 Op 1 9/0.000 + CDS 62089 - 62328 400 ## PROTEIN SUPPORTED gi|227519866|ref|ZP_03949915.1| 30S ribosomal protein S21 64 32 Op 2 1/0.091 + CDS 62354 - 62803 420 ## PROTEIN SUPPORTED gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 + Term 62814 - 62855 9.0 + Prom 62818 - 62877 6.4 65 33 Op 1 4/0.000 + CDS 62986 - 63960 1230 ## COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase 66 33 Op 2 7/0.000 + CDS 63989 - 66187 994 ## PROTEIN SUPPORTED gi|163762592|ref|ZP_02169656.1| ribosomal protein S21 67 33 Op 3 11/0.000 + CDS 66187 - 66666 718 ## COG0319 Predicted metal-dependent hydrolase 68 33 Op 4 3/0.091 + CDS 66650 - 67051 421 ## COG0818 Diacylglycerol kinase 69 33 Op 5 16/0.000 + CDS 67065 - 67967 1222 ## COG1159 GTPase + Term 67972 - 68032 5.7 70 33 Op 6 3/0.091 + CDS 68050 - 68844 762 ## COG1381 Recombinational DNA repair protein (RecF pathway) + Term 69076 - 69118 9.0 + Prom 69252 - 69311 6.4 71 34 Op 1 19/0.000 + CDS 69365 - 70273 1108 ## COG0752 Glycyl-tRNA synthetase, alpha subunit 72 34 Op 2 . + CDS 70275 - 72359 2799 ## COG0751 Glycyl-tRNA synthetase, beta subunit 73 34 Op 3 . + CDS 72399 - 72590 291 ## gi|227553937|ref|ZP_03983984.1| conserved hypothetical protein + Term 72597 - 72631 4.5 - Term 72585 - 72619 3.5 74 35 Tu 1 . - CDS 72625 - 73557 1110 ## COG0706 Preprotein translocase subunit YidC - Prom 73589 - 73648 6.5 - Term 73600 - 73642 2.2 75 36 Tu 1 . - CDS 73724 - 73999 385 ## COG1254 Acylphosphatases - Prom 74121 - 74180 6.4 76 37 Op 1 . + CDS 74106 - 74882 206 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 77 37 Op 2 . + CDS 74902 - 75339 523 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 75400 - 75437 -1.0 + Prom 75341 - 75400 5.3 78 38 Op 1 38/0.000 + CDS 75523 - 76308 1336 ## PROTEIN SUPPORTED gi|29376895|ref|NP_816049.1| 30S ribosomal protein S2 + Term 76322 - 76383 2.4 + Prom 76330 - 76389 2.3 79 38 Op 2 24/0.000 + CDS 76414 - 77295 582 ## PROTEIN SUPPORTED gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts + Term 77414 - 77456 3.1 + Prom 77382 - 77441 3.5 80 38 Op 3 33/0.000 + CDS 77556 - 78278 998 ## COG0528 Uridylate kinase 81 38 Op 4 . + CDS 78282 - 78839 917 ## COG0233 Ribosome recycling factor + Term 78864 - 78904 3.4 + Prom 78943 - 79002 9.8 82 39 Op 1 41/0.000 + CDS 79209 - 79979 194 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 83 39 Op 2 24/0.000 + CDS 79994 - 81280 1449 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 84 39 Op 3 19/0.000 + CDS 81277 - 82512 1555 ## COG0520 Selenocysteine lyase 85 39 Op 4 6/0.000 + CDS 82499 - 82966 603 ## COG0822 NifU homolog involved in Fe-S cluster formation 86 39 Op 5 . + CDS 82985 - 84379 1557 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component + Term 84471 - 84537 12.0 - Term 84461 - 84520 7.7 87 40 Op 1 . - CDS 84540 - 85142 651 ## COG2364 Predicted membrane protein - Prom 85166 - 85225 3.2 - Term 85171 - 85220 11.5 88 40 Op 2 . - CDS 85227 - 86006 245 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 - Prom 86036 - 86095 2.3 + Prom 86203 - 86262 6.0 89 41 Op 1 . + CDS 86295 - 86375 57 ## 90 41 Op 2 7/0.000 + CDS 86422 - 87690 1340 ## COG0750 Predicted membrane-associated Zn-dependent proteases 1 91 41 Op 3 5/0.000 + CDS 87762 - 89480 2277 ## COG0442 Prolyl-tRNA synthetase + Term 89542 - 89591 14.1 + Prom 89587 - 89646 7.9 92 42 Tu 1 . + CDS 89731 - 94086 4321 ## COG2176 DNA polymerase III, alpha subunit (gram-positive type) + Term 94108 - 94149 7.0 + Prom 94201 - 94260 8.5 93 43 Tu 1 . + CDS 94297 - 95754 1488 ## COG0531 Amino acid transporters + Term 95800 - 95848 11.6 + Prom 95813 - 95872 5.9 94 44 Tu 1 . + CDS 95974 - 97350 1336 ## EF2376 hypothetical protein + Term 97403 - 97452 13.2 + Prom 97466 - 97525 5.3 95 45 Tu 1 2/0.091 + CDS 97549 - 100320 2523 ## COG1199 Rad3-related DNA helicases + Prom 100324 - 100383 5.7 96 46 Op 1 5/0.000 + CDS 100408 - 100914 517 ## COG5353 Uncharacterized protein conserved in bacteria 97 46 Op 2 5/0.000 + CDS 100953 - 102152 1233 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 98 46 Op 3 . + CDS 102187 - 103521 1466 ## COG0017 Aspartyl/asparaginyl-tRNA synthetases + Term 103531 - 103583 15.1 + Prom 103543 - 103602 3.6 99 47 Op 1 . + CDS 103634 - 104053 373 ## gi|256961325|ref|ZP_05565496.1| predicted protein 100 47 Op 2 . + CDS 104111 - 104515 163 ## EF3145 hypothetical protein + Term 104525 - 104558 2.3 - Term 104506 - 104553 12.1 101 48 Tu 1 . - CDS 104560 - 105519 1117 ## COG0673 Predicted dehydrogenases and related proteins - Prom 105562 - 105621 9.3 + Prom 105524 - 105583 7.7 102 49 Op 1 . + CDS 105692 - 106210 702 ## EF2369 hypothetical protein 103 49 Op 2 . + CDS 106231 - 106449 227 ## + Prom 106470 - 106529 1.9 104 50 Op 1 . + CDS 106549 - 107190 782 ## COG1705 Muramidase (flagellum-specific) 105 50 Op 2 . + CDS 107210 - 107896 978 ## EF2366 hypothetical protein Predicted protein(s) >gi|284795514|gb|ADDQ01000035.1| GENE 1 51 - 152 63 33 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKEHLKTFALLPICFFKYTNHLFDFDILFVSFV >gi|284795514|gb|ADDQ01000035.1| GENE 2 151 - 882 689 243 aa, chain + ## HITS:1 COG:SA0513 KEGG:ns NR:ns ## COG: SA0513 COG0546 # Protein_GI_number: 15926233 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Staphylococcus aureus N315 # 6 205 4 202 227 64 25.0 2e-10 MENRGILFDKDGTCIRFDTLWQAGLQACFETLSMLAPHHSAEIKKILAIQEQRFLQKHLL DEVLYQELYQELAQFEELVEQGISSRWLEQFFYDYLRKNLKKIEPIGDLKQLFLELKRKN YKIGLATSDTLPATMLIMEYLGLTEMFDFIATGDRYLPKPDADMLQAFCQSCQLKATEVI MVGDSLVDVFMGTCHGKAGIGVLTGNCQSTDFEKFEVAYFRDIHEIPYQELWENTKKKKI LKR >gi|284795514|gb|ADDQ01000035.1| GENE 3 906 - 1199 161 97 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256961229|ref|ZP_05565400.1| ## NR: gi|256961229|ref|ZP_05565400.1| predicted protein [Enterococcus faecalis Merz96] # 13 97 13 97 97 140 100.0 3e-32 MAAVAEWAVVVAPPTQLAAAHSVVAVEVFRFFAEIPTPIKSDKNQPIEPKLSDSQKNSSS TIEDVMAELRNLKMLVDEGILTEEEFQQKKRQLLQLD >gi|284795514|gb|ADDQ01000035.1| GENE 4 1111 - 1920 869 269 aa, chain - ## HITS:1 COG:L188985 KEGG:ns NR:ns ## COG: L188985 COG1512 # Protein_GI_number: 15673333 # Func_class: R General function prediction only # Function: Beta-propeller domains of methanol dehydrogenase type # Organism: Lactococcus lactis # 21 252 22 260 261 125 36.0 8e-29 MKKRLLPIFFLILLTFGLALPVSAAENSIDDDAQLLTPDQINQLKQEIQPLEEKTKASVF IVTTNNNTYGDEQDYADHYLLNKVGKDQNAILFLIDMDLRKVYISTSGNMIDYMTGARID DTLDKVMDGMSQGNYFAAAQTFVQETQAFVNKGVPGGHYRVDSETGKITRYKVITPLEMV IAFAAALILSLVFLGINISKYQLKFSSYQYPFREKTTLNLTSRTDQLTNSFITTRRIPKN NGGSGGMGGGGSTTHSTGGGTFGGGGRSF >gi|284795514|gb|ADDQ01000035.1| GENE 5 1917 - 3062 882 381 aa, chain - ## HITS:1 COG:no KEGG:EF2478 NR:ns ## KEGG: EF2478 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 381 1 381 381 712 99.0 0 METTFTHKCPNCGGPLLFNPKDQKFHCEYCLNIYTEEEVTRYEQQQHEAHLENPSTTTAE ENLTFTAEEESSATQQTETTENETTADTGTMEIFNCPSCGAQIVTDATTAATYCYYCHNP VVLAGRLSGEFLPENVLPFTIEKDEAIEKFLAWTKKKWFIPRDFFSKNQIDKLTGVYFPY WVVDAEVDGQLQATGTSIRIWRVGDIEYTETKRFNVGRSGKLSFKELVKNALSKNVQQKM VEGVQPFLIDQAVPFKSQYLAGFQAEKRDIEYEAIKKHVQQELQDYSESLLRDSASGYTT LTNVRTDISLNQENNYYMLLPIWLVTYRSQEQSKKVYYYAMNGQTGKVSGVLPISYTRLG LATLGIFAGLLALFLLGGYFL >gi|284795514|gb|ADDQ01000035.1| GENE 6 3166 - 4398 1320 410 aa, chain - ## HITS:1 COG:L186490 KEGG:ns NR:ns ## COG: L186490 COG4260 # Protein_GI_number: 15673331 # Func_class: S Function unknown # Function: Putative virion core protein (lumpy skin disease virus) # Organism: Lactococcus lactis # 15 405 1 384 389 566 69.0 1e-161 MGLIKAATSSVGGGLADQWLEVIEPDNMGDTTVMTKGVFVRKDDKRGSNRKGTDDVLTDG SVVHVYPNMMMLLVDGGKIIDYTAEEGYYTVKNDSAPSMFNGSLKDAIAETFSRFKFGGV TPQKQQVFYINLQEIKGIKFGTPAPLNYFDNFYNAELFLRAHGNYSIKITDPLLFYTNAI PKNQTQVDINDINEQYLAEFITALQAAINQMSADGQRISYVPSKSVELSKYMQTALDEDW RTNRGMEIVSVAVASISYTDDSTKLINMRNEGAMLSDPGVREGYVQGSLARGMEAAGKNE GGAMSGFMGVGMGMNANGNYFAQASQTNQQQMQEKQNQQNAQGATDTWTCPQCGTENTGK FCSNCGTPKPTNEKPKLEMKCSECSEIVDLSNGIPKFCPHCGKPFQGVPL >gi|284795514|gb|ADDQ01000035.1| GENE 7 4605 - 6647 2393 680 aa, chain + ## HITS:1 COG:lin0461 KEGG:ns NR:ns ## COG: lin0461 COG0768 # Protein_GI_number: 16799537 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Listeria innocua # 1 675 1 676 678 568 47.0 1e-161 MERSNRNKKSSKKPLILGVSALVLIAAAGGGYYAYSQWQAKQELAEAKKTATTFLNVLSK QEFDKLPSVVQEASLKKNGYDTKSVVEKYQAIYSGIQAEGVKASDVQVKKAKDNQYTFTY KLSMSTPLGEMKDLSYQSSIAKKGDTYQIAWKPSLIFPDMSGNDKISIQVDNAKRGEIVD RNGSGLAINKVFDEVGVVPGKLGSGAEKTANIKAFSDKFGVSVDEINQKLSQGWVQADSF VPITVASEPVTELPTGAATKDTESRYYPLGEAAAQLIGYTGTITAEDIEKNPELSSTGVI GKTGLERAFDKELRGQDGGSLVILDDKENVKKALQTKEKKDGQTIKLTIDSGVQQQAFAI FDKRPGSAVITDPQKGDLLATVSSPSYDPNKMANGISQKEYDAYNNNKDLPFTARFATGY APGSTFKTITGAIGLDAGTLKPDEELEINGLKWQKDKSWGGYFATRVKEASPVNLRTALV NSDNIYFAQQTLRMGEDKFRTGLNKFIFGEELDLPIAMTPAQISNEDKFNSEILLADTGY GQGQLLISPIQQATMYSVFQNNGTLVYPKLVLDKETKKKDNVISANAANTIATDLLGSVE DPSGYVYNMYNPNFSLAAKTGTAEIKDKQDTDGKENSFLLTLDRSNNKFLTMIMVENSGE NGSATDISKPLIDYLEATIK >gi|284795514|gb|ADDQ01000035.1| GENE 8 6763 - 7482 281 239 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase [Lactobacillus jensenii 269-3] # 43 226 2 185 380 112 39 4e-54 MRILAIDTSNQTLSIAVCENQKILGSYTATVKRNHSLTLMPAIDYLMSQLNLVPTAIDRF VVAEGPGSYTGLRLGVTTAKTLAYTLKKELVGISSLQTLAANCVGQTGLIVPLFDARRKN VYAGAYRFVDGVWQNELPDQHISLRELLEQLKNEPNLFFVGEDVEKFTEEIAQIIPHGEI CDVPQWQIPNAAVLAALGSVAEPVENVHGFLPAYLKKVEAEENWLKTHTPNGESYVEKL >gi|284795514|gb|ADDQ01000035.1| GENE 9 7466 - 8008 291 180 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|58336726|ref|YP_193311.1| ribosomal protein ala-acetyltransferase [Lactobacillus acidophilus NCFM] # 1 178 1 179 190 116 36 4e-25 MWKNFNFVTKYFTKRRQRYITKTIAMNQQEFQLREITYQDIKDLLAIEREVYAGELPWTM SAFMAELGSKAPHLYLLAAINGKAVGFIGCRIQGTDAHITNVAVHTAYQGLGLGRSLIEE TRIFAKKNRCETLSLEVRMSNVKAQRLYRKIGFVSQTVKKGYYDENNEDALEMIIDLKEE >gi|284795514|gb|ADDQ01000035.1| GENE 10 8016 - 8480 195 154 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119946836|ref|YP_944516.1| ribosomal-protein-alanine acetyltransferase [Psychromonas ingrahamii 37] # 1 149 9 160 162 79 27 6e-14 MLVTKKEISVANIGEELWRFSNSSYTTGSPWTETQFAEDFAQENSEYLFLVENGQWLGYI AYHFILDEAEISHVVVNGQKQHQGIGCQLMKAFKEYVKSRDITQIFLEVRESNTLAQKLY EKTGFRKVAVRKNYYKEPQENAFVMCAKLRKEAQ >gi|284795514|gb|ADDQ01000035.1| GENE 11 8477 - 9523 713 348 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229232313|ref|ZP_04356740.1| (SSU ribosomal protein S18P)-alanine acetyltransferase [Cryptobacterium curtum DSM 15641] # 10 319 518 834 860 279 47 2e-80 MTIFTKERKLLLAVESSCDETSVAVIEDGDKILSNIVASQIKSHQRFGGVVPEVASRHHV EQVTICIEEALTEAKVTPEELSGVAVTYGPGLVGALLIGLSAAKAFAWAHQLPLIPVNHM AGHIYAARFVAPLEFPLMALLVSGGHTELVYMKEDGSFEIVGETRDDAAGEAYDKVGRVL GLPYPSGKEIDALAHEGTDTYQFPRAMLKEDNYDFSFSGLKSAFINTVHNAEQRGEVLST KDLAASFQASVVEVLVTKTIRACQEYPVKQLLIAGGVAANQGLREAMRYAISEQLPEVTL LIPPLKLCGDNAAMIGAAAFIEAEKNHFASYNLNAEPSVSFMTISEEG >gi|284795514|gb|ADDQ01000035.1| GENE 12 9842 - 11533 2204 563 aa, chain + ## HITS:1 COG:SPy2151 KEGG:ns NR:ns ## COG: SPy2151 COG0018 # Protein_GI_number: 15675893 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Arginyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 563 1 563 563 726 62.0 0 MNNKEIVAKALHDVLNEELTMDQIEQLLENPKSVDHGDVAFPAFSLAKIYRKAPQQIAAE LAEKIDGTNFEKIEVVGPYLNFFMNKEAVSQAVIGAVVKEKNNYGNSTFGNNGNVPIDMS SPNIAKPISMGHLRSTVIGNSIAFILEKIGYQPIRINHLGDWGTQFGKLIVAYKKWGSEE AVRQQPINELLRLYVQFHEEAEEKPELEDEARAWFKKLEEGDQEANELWKWFRSESLKEF DKIYSMLEVEFDSYNGEAFYNDKMDEIVTLLEEKHLLTENQGAEIVDLTEYNLNPALIRK SDGATLYITRDLAAALYRKRTYDFAKSLYVVGNEQSNHFKQLKAVLKELGFDWSDDMEHI PFGLITQGGKKLSTRKGKIVLLEEVLNEAVTLAGNQINEKNPDLANREEVAKQVGVGAVI FHDLKNDRLNNFDFVLDEVVRFEGETGPYVQYTHARAMSILRKANFTPDATQRYALNDKD SWEVVKLLQKFPETVMQAAEKYEPSVIAKHSIHLAQAFNKYYAHVRILDEDAQKEARLAL VYAVATVLKEDLRLLGLHAPEEM >gi|284795514|gb|ADDQ01000035.1| GENE 13 11689 - 12189 613 166 aa, chain + ## HITS:1 COG:SPy0357 KEGG:ns NR:ns ## COG: SPy0357 COG1418 # Protein_GI_number: 15674508 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Streptococcus pyogenes M1 GAS # 5 157 3 150 166 178 64.0 5e-45 MTEKWREDEEYLSYVEDLLATEEVQKLAEYTQHMHSTRLEHSISVSYHSYKLAKRWNGNA RATARAGLLHDLFYYDWRTTKFDEGSHAYVHPRIAAKNAEKITELSDLERDIIIKHMWGA TIAPPKYKESYIVTFVDKYCAVKEAALPMTTAMKTKWRQYFGQQSI >gi|284795514|gb|ADDQ01000035.1| GENE 14 12271 - 12594 314 107 aa, chain - ## HITS:1 COG:no KEGG:EF2469 NR:ns ## KEGG: EF2469 # Name: not_defined # Def: Cro/CI family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 107 1 107 107 187 99.0 1e-46 MKENFLKQKRMEKNLTLEQVGNFVGVGKSTVRKWETGMIENMGRDKIVALSKILDVSPLE ILGIPETEETPFVVPTNIMNIYKQLTTENQEAVYRYAQKKLTEQNYF >gi|284795514|gb|ADDQ01000035.1| GENE 15 12773 - 13021 274 82 aa, chain + ## HITS:1 COG:no KEGG:EF2467 NR:ns ## KEGG: EF2467 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 78 1 78 92 117 88.0 2e-25 MESNLIHSKLKLKGKNVEWLASEMTAAGQPISASTIYKKLKGEVVFKASDIKLISKLLDL ESEEIMVIFFNELVSKKTRKGC >gi|284795514|gb|ADDQ01000035.1| GENE 16 13232 - 14497 1277 421 aa, chain + ## HITS:1 COG:RSc1803 KEGG:ns NR:ns ## COG: RSc1803 COG0038 # Protein_GI_number: 17546522 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Ralstonia solanacearum # 14 400 4 390 431 280 44.0 3e-75 MKKETKQLLSISGYMAKWLLITAIIGLFMGALSAFFLKSLTYVTDVRLANPWLLFILPIS GVVFTYFYTRFGKNASRGNNLVIEQGNGGEEDIPLRLIPLTLFGTITTHLFGGSVGREGT AVQMGGAIANAVGKVFKLSALERQVIIISGISAGFSSVFGTPLAGTVFGLEVLAIGKVRA EALFPSFFAGLFANFVTESFGVTHTHYPMGKIPTWSVDLFVKLFLASICFGLAGWVFSRS IVFLKKAYANWFANVYLRAFLGAAIVVLFVLVLNNQRYLGLSLPLLEDAFAGNAQPFDFV GKLFFTVLSLGAGFQGGEVTPLFEIGATLGSSLAPLLHLSIPFLAGLGFIGVFSGATNTP IACFIMGIELFGSEAAVYFFMVCLISFMCSGNSGIYASQQSLYRKGTAEYPLFNALKNRR K >gi|284795514|gb|ADDQ01000035.1| GENE 17 14547 - 14825 450 92 aa, chain + ## HITS:1 COG:SP1404 KEGG:ns NR:ns ## COG: SP1404 COG4476 # Protein_GI_number: 15901258 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 2 90 3 91 92 92 55.0 2e-19 MKDYQYPLDLDWTTEEMVIVTNMWTAVEQANETGLPVDKFLTTYQQFKTVVKSIGEEKRL GREFENASGYSLYRTLQQAKKQGSGKLKLGDD >gi|284795514|gb|ADDQ01000035.1| GENE 18 14826 - 15608 1043 260 aa, chain + ## HITS:1 COG:BS_yktC KEGG:ns NR:ns ## COG: BS_yktC COG0483 # Protein_GI_number: 16078531 # Func_class: G Carbohydrate transport and metabolism # Function: Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family # Organism: Bacillus subtilis # 1 257 1 262 265 180 37.0 2e-45 MTETQKFVQTIQSWLFEAADVIRMNLESELTVQQKNGRTDLVTNMDEQTQEFLMNKIQTN FPEDQILGEEKGYNTLKSFAGRVWIIDPIDGTMNFVMERENFCIMLAVYEDGIGKLGFIY DVMREELYWGGKGLGVYRNNQLLKAPTMKALADGLWGMNAYMHGKNIHYATEIGQASMGV RISGCAGLEIIAMLKGNHHGYLSNLSPWDYAAGLVLLEEFGFKYSGITGKPLTFAGREYF IAATPETYDEVFTRYLNESE >gi|284795514|gb|ADDQ01000035.1| GENE 19 15829 - 17664 2065 611 aa, chain + ## HITS:1 COG:SP0681 KEGG:ns NR:ns ## COG: SP0681 COG1217 # Protein_GI_number: 15900582 # Func_class: T Signal transduction mechanisms # Function: Predicted membrane GTPase involved in stress response # Organism: Streptococcus pneumoniae TIGR4 # 2 611 3 613 613 1019 86.0 0 MKYRDDIRNVAIIAHVDHGKTTLVDELLKQSDTLDGHTQLQERAMDSNALESERGITILA KNTAVDYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALE QKVTPIVVVNKIDKPSARPEHVVDEVLELFIELGADDDQLDFPVVYASALNGTSSESDDP ADQEPTMAPIFDKIIEHVPAPVDNSDEPLQFQVSLLDYNDYVGRIGIGRVFRGTMKVGDQ VALMKLDGSVKNFRVTKILGFFGLQRVEIDEAKAGDLIAVSGMEDIFVGETVVDVHNQEA LPILHIDEPTLQMTFLVNNSPFAGREGKYITARKIEERLMAELQTDVSLRVDPIGPDSWT VSGRGELHLSILIENMRREGYELQVSRPEVIEREIDGVKCEPFERVQIDTPEEYMGSVIE SLSLRKGEMQDMINAGNGQMRLIFLAPARGLIGYSTEFLSMTRGYGIMNHTFDQYLPMIQ GTIGGRHQGALVSIDTGKATTYSIMSIEERGTVFVEPTTEVYEGMIVGENNRDNDLTVNI TKAKQMTNVRSATKDQTSVIKKPKKLTLEESLEFLNEDEYCEVTPESIRLRKQILNKNER EKASKKKKKAE >gi|284795514|gb|ADDQ01000035.1| GENE 20 17739 - 18392 518 217 aa, chain + ## HITS:1 COG:lin1330 KEGG:ns NR:ns ## COG: lin1330 COG0584 # Protein_GI_number: 16800398 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Listeria innocua # 32 141 2 106 235 80 36.0 2e-15 MNKIAKYLIVGVFLLTGCANSSVERLLPKNQTQIIAHRGDHNKAPENTVEAINEAANQNY NGVEIDVRSNKDGQLYLMHDNTLDRTTNGQGRSEKFTMKQLKKLSIKTASYPKYENTSIK IPTFEEAIEAAANNGLMVNVDGSKGNWLDGHFVKNVMDILKKYEIYDRSFFVISDEPSRN FVIQKYPDATVSWLCDKKEDIPKEIKKLNHIKTHYYL >gi|284795514|gb|ADDQ01000035.1| GENE 21 18870 - 20639 2083 589 aa, chain + ## HITS:1 COG:lin2900 KEGG:ns NR:ns ## COG: lin2900 COG0514 # Protein_GI_number: 16801959 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA helicase # Organism: Listeria innocua # 5 583 6 586 590 712 58.0 0 MSALQELLKDTFGYDDFRPGQETIIRHVLRQENVLGIMPTGGGKSICYQLPALLLDNLTL VISPLISLMKDQVDALNLMGIPATYINSTISYQEMNHRIQLAVNKEVKLLYVAPERLESY DFQQMLTHVPIDLLAVDEAHCISQWGHDFRPSYLRLAEIIDQFQQQPTVIALTATATPQV AEDIVKQLRIPSENEIKTGFARENLSFQVVKDQNRDVFLLEYLKMNTGQSGIIYASTRKE VERIYHLLENKKIAAGMYHGGMSEQLRSENQEAFLYDQVQVMVATNAFGMGINKSNVRFV IHAQVPGNIESYYQEAGRAGRDGLPSDAVLMFAPQDLQIQQYFIEQSEMTIDYKQKEYLK LREMSQYANAQMCLQKYILRYFGEEGTDCGRCSNCLDNRELVDITVDAQKVLSCVKRMGE RFGKGLVGKVLTGSKDQKIDQWHFDRLPTYGLMKGRTQKEVTQLIDYLTAERYLIPSDGQ FPLLSVSTEGVQVLLGERKVFRKEDQKVRKVAVDDALFERLRELRMDMAQEAGVPPYVVF SDSTLKEMCEKLPQTTIQLLQIKGVGQNKLDKYGTAFLEVIKEYQETKK >gi|284795514|gb|ADDQ01000035.1| GENE 22 20866 - 21171 436 101 aa, chain + ## HITS:1 COG:lin1058 KEGG:ns NR:ns ## COG: lin1058 COG4838 # Protein_GI_number: 16800127 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 10 84 12 86 93 77 53.0 6e-15 MDEGISKKFAIQLLEDDAERIKMLIRNQKNSLCISQCKAFEEVVDTQMYGFSRQVTYATR LGILTNDEGHRLLSDLERELNQLYTDVYEETQEKNEIGKEG >gi|284795514|gb|ADDQ01000035.1| GENE 23 21175 - 22383 1289 402 aa, chain + ## HITS:1 COG:SP1067 KEGG:ns NR:ns ## COG: SP1067 COG0772 # Protein_GI_number: 15900936 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 4 393 2 398 409 342 48.0 6e-94 MPNKVKKRHLLDYSIFIPYLILSIVGLIMVYSSTSALQVMKGFSPTSFVINQVAFWVVGL VAMFFIYKMKTSVFQNRSFIMFAIAVITVMVLAVRIPGIGKEINGARGWIEIGGFSMQPA EYLKIMVVWYLSYILARRQKTINGGMDQFKQAAGRPLMLVFVLIALVAIQPDFGNAAILT LITIVMVLASGINYMYTYLVGGLGILGSITAIQLLIMSKGKIFPARYQYIYNRFAVFKNP FLDERNLGHQLANSYYAISNGGWFGKGLGNSVQKKGFLPEAHTDFIFAITLEELGIIGGL AILGLLMFMIARIILVGVRSKKPFNSLMCIGIGTMLLIQVFINVGGITGIIPLTGITFPF LSQGGNSLLIISIAVAFVLNISADETRQKLENEYYLSLEQNQ >gi|284795514|gb|ADDQ01000035.1| GENE 24 22416 - 25844 4150 1142 aa, chain + ## HITS:1 COG:L63652 KEGG:ns NR:ns ## COG: L63652 COG1038 # Protein_GI_number: 15672651 # Func_class: C Energy production and conversion # Function: Pyruvate carboxylase # Organism: Lactococcus lactis # 1 1139 1 1136 1137 1655 70.0 0 MKKVLVANRGEIAIRIFRACTELDIQTVAIYAAEDEYSVHRFKADEAYLVGKGKKPIEAY LDIENIIQIAKKSGADAIHPGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAK EAAVAAGIASIPGSDGPVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREG YERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKVVE VAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLVEGDQFYFIEVNPRVQVEHTITE MITDIDIVISQLQIAQGLDLHKDMHLPKQNELTLKGAAIQCRITTEDPLNQFMPDTGKID TYRSPGGFGVRLDVGNAYSGYAVTPYFDSLLVKVCTHGFSFEQAISKMQRCLKEFRIRGV KTNIPFLQNVVSYPAFQSGEAKTTFIDNTPELFEFPRMRDRGNKTMKYIGEVTVNGFPGI ERTEKKYFEAPRVPTDIEVPEKVITAKNILDAQGATAVIDWVKNQESVLMTDTTFRDAHQ SLLATRVRTQDFKAIAGLTDVALPELFSSEMWGGATFDVAYRFLTEDPWQRLRKIRQLMP NTLLQMLFRGSNAVGYQNYPDNVIEEFIKESARQGVDVFRIFDSLNWIPQMEKSIQVVRD TGKIAEAAICYTGDINDPARAKYNVQYYLDMAKELENLGAQIIAIKDMAGLLKPQAAYRL ISELKAATDLPIHLHTHDTSGNGIITYSAATKAGVDIVDVAMSAMSGATSQPSMNSLYYA LVNGERTPTINIDNAQKINHYWEDVRMYYQPFENGLNAPQTEVYMHEMPGGQYSNLQQQA KAVGLGHRWDEIKKMYHTVNLMFGDIVKVTPSSKVVGDMALFMVQNNLTEQDVYACGEEL SFPESVVTFFQGDLGQPVGGFPKELQRIILKGRPAFTERPGDLAAPVDFAKVQEELAEKI GYQPKLEEVLSYLMYPQVFLEYRQKYETFGDITLLDTPTFFNGIRQGETLEVQIERGKTL IIRLDEIGEPDIDGNRVLFFNLNGQRREVLVKDASIKSAVQVKQKAEPTNKEQIGATMSG SVLQVLVKRGDKVEKGQPLLITEAMKMETTIEARFAGTVDHIYVEEGEAISSGDLLLEVK EK >gi|284795514|gb|ADDQ01000035.1| GENE 25 25861 - 26985 967 374 aa, chain + ## HITS:1 COG:lin2162 KEGG:ns NR:ns ## COG: lin2162 COG2340 # Protein_GI_number: 16801228 # Func_class: S Function unknown # Function: Uncharacterized protein with SCP/PR1 domains # Organism: Listeria innocua # 1 236 1 246 351 90 26.0 6e-18 MKRFWAFTAVFLTVLLIGYLEPVFFPAEKPTETAQSGRLSSAHTAVPHEELPASGYAAYI GKDVETFIRQFGNPKEKIKTGRTYELWTFGLTMNDYLEVNVRENKVIAIKAFNNDKMIEP FKIDMKLADLSDLMTIYSNFAFNFHHEAYDVELMEEDMNYRPLVAFDNGSFAVLFFNQRT GGLMAVNYVNKETLLTEMPYQLNEGSPLPVDITQSMTFDPVQSNQAIYVMNLVKQQENQA AFSVSTQSQKDAQTLYQTLANHTPTILSANRQAELLQTREEHTAIHPFHLTKDEFSLLVK TSKLSLREPAGIFQEPVYDSTFTILSWFSDPQYDSYFAESETTELGVAFSNEGVLVLLEK RPENRQITESSEKL >gi|284795514|gb|ADDQ01000035.1| GENE 26 26982 - 27416 220 144 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764796|ref|ZP_02171849.1| ribosomal protein S17 [Bacillus selenitireducens MLS10] # 7 141 12 143 146 89 35 7e-17 MIVTEHLFAIEDQTECLISALLESDAVQNYKETKKAMYASAEVAQLQKAFLEAKSAFERV EAYGIHAPDFRGKQRALRKAKRALDLNEIVANYRFAETNVQTLLDTIGLKIAQLISEDIK VDAGNPFFERGKKHSGCGGSCHAS >gi|284795514|gb|ADDQ01000035.1| GENE 27 27406 - 27756 431 116 aa, chain + ## HITS:1 COG:BH2594 KEGG:ns NR:ns ## COG: BH2594 COG4471 # Protein_GI_number: 15615157 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 14 91 6 83 92 70 46.0 1e-12 MQAKEEKEFTLQERRCLIVWVYTLKPLKQLRRYGLIHYVSRKMKYVVIYMNEENIESNME KINQLHFVRSVDKSYRPDVEMNFAEKIGTKAAYQEQEDDGYVVEELSTEIRLAENV >gi|284795514|gb|ADDQ01000035.1| GENE 28 27855 - 28409 689 184 aa, chain + ## HITS:1 COG:L22498 KEGG:ns NR:ns ## COG: L22498 COG0742 # Protein_GI_number: 15674145 # Func_class: L Replication, recombination and repair # Function: N6-adenine-specific methylase # Organism: Lactococcus lactis # 1 180 10 186 188 213 61.0 2e-55 MRVISGEYGGRRLKALDGDNTRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAV SRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD PPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKTVKLPETIGTLEKIRETVYGITQVTIY RQEA >gi|284795514|gb|ADDQ01000035.1| GENE 29 28411 - 28902 334 163 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 [Bacillus selenitireducens MLS10] # 2 158 3 158 164 133 43 4e-30 MRKIALFPGSFDPMTNGHLNLIERSAKLFDEVIIGVFINTSKQTLFTPEEKKYLIEEATK EMPNVRVIMQETQLTVESAKSLGANFLIRGIRNVKDYEYEKDIAKMNQHLAPEIETVFLL AEEPYAHVSSSLLKEVLRFGGDVSDYLPPNIYHALKQKKNDWS >gi|284795514|gb|ADDQ01000035.1| GENE 30 28907 - 29959 471 350 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 [Bacillus selenitireducens MLS10] # 1 346 1 343 350 186 33 5e-46 MNKKTEKFSFKSLIPMVLALLLIGLFIVPIPYYIEGPGTTENLKEFVTVDGKKDTQSGAF YLTTVGIRSATIFSAIKANFSDFQEVMSKKELMGDSSNSEYNRIQQYYMDSSKNAAIEQA LKLAKVPYEMKFKGVYVLAMEDNSSFKGKIEVGDTVTGVDGKSFKSSEELMNYIKAQKVN QKVTVQFIQDGKAKEATGKLIELPTDKKAGIGIGLTDHTEIDSSIPVSIEAGDIGGPSAG LMFTLQTYEQLSHKDLRKGHEIAGTGTMNSQGIVGRIGGIDKKVVTASENGAEIFFAPDD EITSEMKKVEPKIKSNYQEAQEAAKKIGTKMKIVPVKTVQDALNYLEKLK >gi|284795514|gb|ADDQ01000035.1| GENE 31 30055 - 30699 676 214 aa, chain + ## HITS:1 COG:lin1519 KEGG:ns NR:ns ## COG: lin1519 COG1555 # Protein_GI_number: 16800587 # Func_class: L Replication, recombination and repair # Function: DNA uptake protein and related DNA-binding proteins # Organism: Listeria innocua # 67 212 57 199 200 132 47.0 4e-31 MDWLKQLPKKWLLLGSGASMVILITLLVGIYLMVNKEPQVDTKMWEETSLTTMAEVATDA TKERAETMIYVDIKGAVKVPGIYQLKNQQRIWDALALAGGVSEEADTTQVNYAQKVKDQM IIYVPKKGESVPQSLETLQESAPAQQNQEEKINLNTATEAELQTISGIGAKKAQEIIRFR DEQGPFKTVEELKNVPGIGEKTVERLKDMLTVTG >gi|284795514|gb|ADDQ01000035.1| GENE 32 30822 - 31325 479 167 aa, chain + ## HITS:1 COG:BH1334 KEGG:ns NR:ns ## COG: BH1334 COG2131 # Protein_GI_number: 15613897 # Func_class: F Nucleotide transport and metabolism # Function: Deoxycytidylate deaminase # Organism: Bacillus halodurans # 1 141 1 141 188 235 75.0 2e-62 MERIPWDQYFMGQSVLLSLRSTCTRLTVGATIVRDKRIIAGGYNGSVSGGTHCIDEGCYV VDNHCVRTIHAEMNAILQCAKFGVPTEGAEIYVTHFPCLQCTKMILQAGIKKIYYLKDYR NDAYALNLIEQVGATVEKVTLVPKYFAELQWGEEFATLEDNPSSAEE >gi|284795514|gb|ADDQ01000035.1| GENE 33 31648 - 33624 1173 658 aa, chain + ## HITS:1 COG:L0317_2 KEGG:ns NR:ns ## COG: L0317_2 COG2333 # Protein_GI_number: 15673754 # Func_class: R General function prediction only # Function: Predicted hydrolase (metallo-beta-lactamase superfamily) # Organism: Lactococcus lactis # 390 642 23 276 282 221 44.0 4e-57 MAFYQLKSVKEKQQWQQLATTIQATAVGILDSPQGQTNKNGFNYQLFLKNQGIEAILFIE EIGQPRFFFSWRFKEIISGWRKWAMVHIQKNFGDTSAMYMNALLLGFRNEEFAEISDKFS ALGILHLFSLSGMHVSFFLRLFRLLMLRIARRTQESYFLWQCGFSLIYAGLTGFSVSVMR ALLQTNLNTFNRRFNWQVPALDCWSLTLLVHLIVQPTLFFSVGGQFSYLLSFVLLFLEQT LVGYSSPFIKNCLGSFLLAVASLPILVQSFYEWPLLGSFLTFLLLPIFERFLLPLLTLSF FLVIIMPARYLAALLEPLFLTMNGLFEWVLVHLNPKLTIGYLNSWIQISLLLLIGLSMIY LADKSKKTFFSIGLLIVLINSKYLSPIGIVAMIDVGQGDSLFIQAPFHRKNTLIDTGGRL SFDKEAWRQRKNSRSGAEYSVIPFLKSQGVKRLDEVIITHAHEDHFGDLLAIAQKVPISV LYFPKGAAEANFSFRQVLKQLQKSGTDCRPILAPKRINGPISLQILSPNKSSIGGNNDSI VFSTQLGGRHFLFTGDLEAEGEEQVLARYPQLKIDILKVGHHGSKTSSTKRFIKQLNPRE ALISAGLNNRFKHPHQETLATLEEQKINYYRTDLQGMIYYQWLPWQGLSKAKFVKEQD >gi|284795514|gb|ADDQ01000035.1| GENE 34 33682 - 34710 1138 342 aa, chain + ## HITS:1 COG:BS_yqeN KEGG:ns NR:ns ## COG: BS_yqeN COG1466 # Protein_GI_number: 16079610 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, delta subunit # Organism: Bacillus subtilis # 8 326 7 325 347 243 43.0 5e-64 MELQKALKEVREQKIAPVYLLIGTELYLTELFKTTLMKELLTEEDDQFNFFSFDMEETPL SAAIAEAETIPFFGDYRLVFVENPYFLTAERKTNGVEHDVNLLLNYLESPSPTTVLVFMA SYEKLDERKKVTKALKKNATVVDVNPMDEKAIRQYISQTIESEGYTIRSDAFDLLLQLTD LNLSKIMGELQKLYLYALETKTITRGAVQELVPKSLEHNVFDLTNEVLSGNSEKAVQLYE DLLLQGEETIKLNAILLNQIRLFLQTKILAKMGYQQANIADTLKVHPYRVKLALQQVRRF ELSRLERLYDELVENDYRMKTGQMDKELLFQLFILKLTAQAK >gi|284795514|gb|ADDQ01000035.1| GENE 35 34762 - 35703 1267 313 aa, chain - ## HITS:1 COG:L157055 KEGG:ns NR:ns ## COG: L157055 COG1893 # Protein_GI_number: 15673305 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate reductase # Organism: Lactococcus lactis # 1 313 1 312 312 397 61.0 1e-110 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVAKLPIF SPEEIDHQNEQVDLIIALTKAQQLDAMFKAIQPMITEKTYVLCLLNGLGHEDVLEKYVPK ENILVGITMWTAGLEGPGLVKLLGDGEIELENIDHSGKKFALEVVDVFQKAGLNPSYSSN VRYSIWRKACVNGTLNGLCTILDCNIAEFGALSVSESLVKTLISEFAAVAEKEAIHLDQA EVYTHITQTYDPNGIGLHYPSMYQDLIKNHRLTEIDYINGAVWRKGQKYNVATPFCAMLT QLVHGKEELLGAK >gi|284795514|gb|ADDQ01000035.1| GENE 36 35893 - 36429 429 178 aa, chain + ## HITS:1 COG:lin2060 KEGG:ns NR:ns ## COG: lin2060 COG1607 # Protein_GI_number: 16801126 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA hydrolase # Organism: Listeria innocua # 3 173 5 172 172 167 50.0 7e-42 MTKEKFCRESRVIQTHRVFPFDLNPFGALFGGKLMSLIDDAASISVSRHCRRGAVTASLD NLNFLKPLKENHSVCVETFVSGVHHKSMEVFVKVVGEDLTTGERYLAATCFTTFVAIPSH MNPESDFQLAAVVPETAEEKLICSNYETRRQQRLALREETKLFSQHLTTDLPWIDSPL >gi|284795514|gb|ADDQ01000035.1| GENE 37 36516 - 36830 509 104 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227519840|ref|ZP_03949889.1| ribosomal protein S20 [Enterococcus faecalis TX0104] # 1 104 1 104 104 200 100 2e-50 MITVELHWLTSVKPKSSEVKQMPNIESAIKRVRTSANANAKNSSQTNAMRTAIKKFEEAV AAGADNVDALYNEAVKAVDMAATKGLIHKNKANRDKIRLSKLAK >gi|284795514|gb|ADDQ01000035.1| GENE 38 36999 - 38012 953 337 aa, chain + ## HITS:1 COG:SA0619 KEGG:ns NR:ns ## COG: SA0619 COG0306 # Protein_GI_number: 15926341 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate/sulphate permeases # Organism: Staphylococcus aureus N315 # 17 326 20 324 335 196 39.0 6e-50 MSIALLVTITLVMGVIFVNGWTDAPNAIATAVSTRVLKPNVAIWMAVVMNFLGALVMTFF NAQVAETISNIVSFDANGNASQVALAASLFSIVVWAVAAWYFGIPTSESHALIAGLTGSA MALGGLGAVNGSEWIKVLVGLVVSTVMGFGGGYLIAKLVVKAFSAVPRRKANKFFTVGQA FGAGANAFLHGAQDGQKFMGVFMLVLFYNNLVEKTGGGFVIPLWVMVLCSITMGIGTSVG GMRIIKSVGMDMVKLERYQGFTADLSTAICLFLASAFGIPVSTTHTKTTAIMGVGASKRI SSVDWRIVKEMLIAWILTFPGCGLIAYVMSKLFIAIF >gi|284795514|gb|ADDQ01000035.1| GENE 39 38025 - 38648 811 207 aa, chain + ## HITS:1 COG:RSc1312 KEGG:ns NR:ns ## COG: RSc1312 COG1392 # Protein_GI_number: 17546031 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate transport regulator (distant homolog of PhoU) # Organism: Ralstonia solanacearum # 5 206 11 207 208 98 32.0 6e-21 MARKKQFDYFGELNQLATNAYEAAKVLQEIVDNYSLENLVKKSEAIHQLEKENDEIVRKI LNELYISFITPIDREDIVDITDHLDNIIDSINSLSYLLDHLVVEEMIAPALELTAYIVKA TEGVKSATKEFAKFKNSKTLVSLIDEVNTIESQGDKLYSSAMKDLMTNEKDLLKVIKWKD VYDQLERTINDCESAVNIIVGIVIKNT >gi|284795514|gb|ADDQ01000035.1| GENE 40 38667 - 39452 764 261 aa, chain + ## HITS:1 COG:lin0339 KEGG:ns NR:ns ## COG: lin0339 COG3394 # Protein_GI_number: 16799416 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 261 1 261 261 402 70.0 1e-112 MVKVIVDADDFGMSEAINHGIIKSYVDGLTTSTLLMPNLPTAEHAVALAKNYPGLFVGQH TNFLLGKPCADPCMIPSLVDEQGNFHRSSYYRQQKQVTFVYEEVRLETIAQLTRFKELTG HYPEHFDCHSIGDEVVDHVFLELAEEYGLHTTLKYSGEKEYPPQQGYFQVTHLLESGALS YIHEGVSVENFLKDDFGLLRMPESAIAEMHFDVGYLDQFVLDNSSYTTLRCKELATICDP RVRQWFEEQGIERITFGDLKK >gi|284795514|gb|ADDQ01000035.1| GENE 41 39491 - 40321 870 276 aa, chain - ## HITS:1 COG:L58643 KEGG:ns NR:ns ## COG: L58643 COG1968 # Protein_GI_number: 15674174 # Func_class: V Defense mechanisms # Function: Uncharacterized bacitracin resistance protein # Organism: Lactococcus lactis # 8 275 5 279 284 298 60.0 8e-81 MLFANLWKAIILGIIEGITEWLPISSTGHLILVDEFIKLDLSKDFMEMFNVVIQLGAIMA VVILYFHKLNPFSPKKNGEEKKDTWILWSKVLVACLPAAVIGLKFDDYLDAHFYNFLTVS IMLIVYGIAFIIIEKRNKNVAPKCTNLKDFTYKAALIVGAFQVLALIPGTSRSGATILGA ILIGASRFVATEFSFFLGIPVMFGASFLKIFKFLAKGNTFGSEEIIILLTGSIVAFVVSI IAIKFLLNYLKKNDFTVFGWYRVILGAILIGYWLFS >gi|284795514|gb|ADDQ01000035.1| GENE 42 40503 - 40997 670 164 aa, chain + ## HITS:1 COG:SP0758_3 KEGG:ns NR:ns ## COG: SP0758_3 COG2190 # Protein_GI_number: 15900652 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIA components # Organism: Streptococcus pneumoniae TIGR4 # 17 159 5 147 151 138 51.0 5e-33 MFGFLKKKNEVVENNTMYAVANGTVIPISEVNDPVFSQKMMGDGYAVVPENGEIYAPIEG EVLSVFQTKHAIGLKMTNGLEILLHMGIDTVELNGAPFTIKVKEGDQVTADTVVAIADLE AIKAAGKGTEMVVIITNMDKVTQFSLEKTGVVTAGTPVGSATAN >gi|284795514|gb|ADDQ01000035.1| GENE 43 41148 - 42257 1105 369 aa, chain + ## HITS:1 COG:L143292 KEGG:ns NR:ns ## COG: L143292 COG3589 # Protein_GI_number: 15673111 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 357 1 349 353 323 47.0 4e-88 MYGISVFLGEEITNDTIIYIKKMKALGFDGIFTSLHIPEDDTSLYRQRLTDLGAIAKAEK MKIMVDISGEALKRAGFSFDELEPLIELGVTGLRMDYGITIEQMAHASHKIDIGLNASTI TLEEVAELKAHQADFSRLEAWHNYYPRPETGIGTTFFNEKNRWLKELGLQVFTFVPGDGQ TRGPIFAGLPTLEKHRGQNPFAAAVGLMADPYVDAVYIGDPTISERTMAQFGYYHQTNQF LLEVAPSESRYLKRILGTHTNRLDAARDVLRSELSRTSEMFRKDEIATIESEQTEARPVG TVTIDNEKYGRYMGEIQVTLVDLLKDEKVNTITRIIEKDQTILPLIKAGNQFTLVTEGTI ENEFRKLNN >gi|284795514|gb|ADDQ01000035.1| GENE 44 42232 - 43122 1241 296 aa, chain + ## HITS:1 COG:L144334 KEGG:ns NR:ns ## COG: L144334 COG2103 # Protein_GI_number: 15673112 # Func_class: R General function prediction only # Function: Predicted sugar phosphate isomerase # Organism: Lactococcus lactis # 1 296 2 297 297 408 74.0 1e-114 MNLENLTTERRNENTMGLDEMSVKEALQKMNQEDQKVAMAVGQELAAIEPVVEAIIKSFN QGGRLIYMGAGTSGRLGVLDAAECVPTFGVEPEMVQGLIAGGQKAMTVAVEGAEDSKELG RQDLVDLKLSANDIVVGIAASGRTPYVIGGLEYATTVGAATATVACNKNAEISKYAQMPI EVDAGPEFLTGSTRLKSGTAQKLILNMLSTISMIGIGKVYNNLMVDVKPTNEKLVERSKR IIMEATGCSYEVAELKFVEAEENVKLAIVMILTDSTKEEATQKLIDGNQFIKNTLN >gi|284795514|gb|ADDQ01000035.1| GENE 45 43145 - 44599 1918 484 aa, chain + ## HITS:1 COG:L145238_2 KEGG:ns NR:ns ## COG: L145238_2 COG1263 # Protein_GI_number: 15673113 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Lactococcus lactis # 117 463 1 348 348 429 72.0 1e-120 MAEERIKRIADGIYKEVGGQENVDKVIHCMTRVRMDIRDYDKVDIEGLKKIDGVMGVVED DTLQVVVGPGTVNKVAQEMVDQAGVKLGEPFNHGTTTDAAAGKSGKDLVEEKAAQMKAQQ KAKQNNTSPFKKVLKAISSIFVPMIPAFVGAGIIGGIAAVMSNLVVAGDISASWQQYIDV LNIIKNGIFAYLALYTGINSASVFGATPALGGVIGAVTMLTGMNPDAPISNIFTGGTLSA GQGGIIGVIFAVWLLSLLEKQLHKIVPESIDIIVTPTISLLVIGLATIFLIMPVAGAISN GLVGIINVVLEKGGMVAGFTLGLTFLPMVMFGLHQILTPIHIEMINQTGMTLLLPILAMA GAGQVGAALALWIRCKSDKKLVEMIKGALPVGILGIGEPLIYGVTLPLGRPFITACIGGG IGGAVIGAFGNVGAIAIGPSGVALIPLIANNQWLAYVLGLLAAYAGGFVATLFFGIPKDM QTTK >gi|284795514|gb|ADDQ01000035.1| GENE 46 44687 - 45535 955 282 aa, chain + ## HITS:1 COG:L147291 KEGG:ns NR:ns ## COG: L147291 COG1737 # Protein_GI_number: 15673115 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 4 282 2 282 283 200 41.0 3e-51 MQQNIVLSIQDRLQQLPKSERKIAEYILKNTETVISMNAQELAKQAGSSPAAIIRFCHSM DVNGFTELKLLLSANLGQMKQQMYTEVTKGESTADIKQKLQARFVHVVERSGQTLEDVAV NEAVDLLEKTEVIFVYGLGASSLVAQDIYQKFTRLGRTVFTTLDHHLFASMLGSTEKPSV FIVISNSGTNKEASTLADLAKQQGIPIISITQDEKSVIGEKSDIVLQTSSGEDVPLRSAA TVSLVAQLYVVDVLFFAYAAKNYKETLEKIQISRKNVERLKE >gi|284795514|gb|ADDQ01000035.1| GENE 47 45585 - 46295 843 236 aa, chain - ## HITS:1 COG:SPy1766 KEGG:ns NR:ns ## COG: SPy1766 COG0406 # Protein_GI_number: 15675611 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Streptococcus pyogenes M1 GAS # 5 233 4 231 235 253 57.0 2e-67 MTEATTLYIIRHGKTMFNTIGRTQGWSDTPLTKQGEEGIYHLGLGLRDIDFKEAYSSDSG RAMQTAQIILQEHQNHQKIPYLTDKRIREWCFGSLDGGYDGELWGVVPRILAFKSYEDMM TTKITYRDLANAIIEADTADWAEPYEVIRDRVWSGFEDIAHHREKNGGGKVMVVSHGLTI SFLLSLIDASLPMQMALENGSVTTLTYEKGTFTIQGINDSSYIEKGKKIAEKRRLL >gi|284795514|gb|ADDQ01000035.1| GENE 48 46336 - 46962 770 208 aa, chain - ## HITS:1 COG:lin2270 KEGG:ns NR:ns ## COG: lin2270 COG0491 # Protein_GI_number: 16801334 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Listeria innocua # 1 208 1 205 205 283 66.0 2e-76 MIQIEQIRTGVIQENCYLVYNEEALLIIDPGAEGAKLIQEITRLGKKPAAILLTHTHYDH IGAVEELRHHYQIPVYVSPLEQAWLSNPILNLSGLGRHDDIANIIVQPAEHEFKLTDYEI GGMKFSVVPTPGHSIGSVSFVFDDFVVVGDALFKGSIGRTDLHTGDMQQLLHSITTYLFT LPEEFPVYPGHGDATTIQHEKATNPFFN >gi|284795514|gb|ADDQ01000035.1| GENE 49 47182 - 48567 1696 461 aa, chain + ## HITS:1 COG:SPCC1672.03c KEGG:ns NR:ns ## COG: SPCC1672.03c COG0402 # Protein_GI_number: 19075374 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Schizosaccharomyces pombe # 54 461 58 463 527 268 36.0 2e-71 MFHFVIKGTGFSSKNLQEIKVYEETLFCIDEAGVIQEIIEPDAEAYETVLAEQKEAQRFQ ELPQDSYLLPGFVDLHVHAPQWAQSGTALDIPLYEWLNTYTFPLESKFADLTFAQQVYDE LVTQLLANGTTTALYFATIHYEASRRLAEICAEKGQRGLIGKVVMDDLNENPEYYRDQTT QQALEETERFIQEIQALAQQTKQGVYPVVTPRFIPSCTEEALKGLGELAAKYQVHVQSHC SESDWEHQFVQERFGKNDAQALNDFGLLTEKAVMAHAGFLEEADMNLFHETGTAVAHCPI SNAYFGNAVTPIAKLVHQHQVEVGLGSDLSGGFSPSLFDNLKQAVISSRMLEDGVDATKK PEVRGVKTARITVNEAFYLATAGGGQALSLPIGKLEKGYAWDVQIINTSLSQARIPKNPG ESLLDIFQKILYLARPENIREVWVQGEKVHDKNLMSATKGV >gi|284795514|gb|ADDQ01000035.1| GENE 50 48571 - 49902 358 443 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 27 438 19 419 447 142 28 7e-33 MSEKKQNNLHLTVGPEDSVSFGQATMLGIQHVLAMDVYVVPVIIASIIGISTAQTSSLIQ ATFIAAGLATIIQSHFCMRLPVAQGPSFIPIGAIAGIYFANNQQGNGWGAVLGASLVGAI VVIILGFTGIFNRLITKFVPPIVGGTIIFVVGLSLMPVALSDNIYHAKGELGQNILLAFI AAGTLIFFALLGSALKKGRIFRVSSVILALLFGSIAAQLLGVLDLSAVSEAAWFSLPQLP LVNFSFQFDWSAIATMLVIYLVLMAETTGTWFAVSHVVAEPLTEEKINRGVIGEGLGCLV SSFIGGTPVTSYSTNAGIISITGVASRKVFVAAGAWFVLFGLSGKLSTLISAIPAPVIGG VFVVVCGIISVSGMKVMSDVTIHEKEMYVIAVPIIMTLALTLLPKEFLETLPQFLQYLFS SPVATASIVAILLQAILPNVQEG >gi|284795514|gb|ADDQ01000035.1| GENE 51 50044 - 51021 1233 325 aa, chain + ## HITS:1 COG:jhp0790 KEGG:ns NR:ns ## COG: jhp0790 COG0516 # Protein_GI_number: 15611857 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Helicobacter pylori J99 # 1 325 1 325 325 581 86.0 1e-166 MKVFDYEDVQLIPNKCIVNSRSECDTTVTLGKHSFKMPVVPANMQTIIDETIAETLAENG YFYIMHRFDEEARVPFIKKMQQKGLITSISVGVKEGEYAFVETLAREGLVPDYVTIDIAH GHSNAVINMIQHLKKSLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKT GFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSVRFGATMVMIGSLFAGHEESPG ETKVEDGVVYKEYFGSASEFQKGEKKNVEGKKIWLRHKGKLADTLVEMQQDLQSSISYAG GRDLEAIRKVDYVIVKNSIFNGDTI >gi|284795514|gb|ADDQ01000035.1| GENE 52 51183 - 51515 214 110 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|18309686|ref|NP_561620.1| 30S ribosomal protein [Clostridium perfringens str. 13] # 2 105 3 107 110 87 42 3e-16 MIGSDAIRGYNDTFILSILQSGASYGYAISKRIREISKEQYSIKETTLYSAFTRLEKNGY IESFPGEVTHGKKRTYYQITHAGERYLEEKLLEWEVTKDVVEAFVKEMGK >gi|284795514|gb|ADDQ01000035.1| GENE 53 51512 - 52540 1085 342 aa, chain + ## HITS:1 COG:no KEGG:EF2427 NR:ns ## KEGG: EF2427 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 342 1 342 342 649 97.0 0 MKIIEEFIDSLFSGVVETSETKQLKADLLANAEDRYEDLLSQGKSENEAIGTIISEFGTI DELMEELNLENKQVDETNDSMNGLPEISVEEGLDYLAVQRKGAIQIGLGVVAIMVSVGLL VGMRGVLSNGLGLVCLFIGVAIGVPLFIVAGNRFVAMDKQLGQRLIPTKLKKEVAQREQS FQRSFIFCMAAGVVFCILGLIPVVVFSSGLHLMMRRSMHQMMGGQYYNGTMGISWLFFLV SVGVFLFIFGGVIKGSFNKLLNETYFYSEHVGHPDFAPQQTKTEEGPVGNPVGAIIASVY WPLVVALYLFISFVLGDWRFSWLIFMFAGIFYNTIQAFLHKH >gi|284795514|gb|ADDQ01000035.1| GENE 54 52675 - 54126 1401 483 aa, chain + ## HITS:1 COG:lin2204 KEGG:ns NR:ns ## COG: lin2204 COG1167 # Protein_GI_number: 16801269 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Listeria innocua # 1 458 1 461 466 402 46.0 1e-111 MWQLKKEQNVPIYRSIMEMIIQKIQTGELLPGEKIPSERKLAEYLSVNRSTVVHALDELV DLGWIVRKRGSGTIVNEGKWGVMMTPRTDWHRYLEQNVFKQVHPLVTEIELRAKQNLPTD LDMYTGELPLDLIPSFDFPALNWKQFLKEEAQDELGYLPLRKEIQAITATEYQLHLPSES LLLTSGAQQALFLVLQVLLRQGDSVAVEDPSFFYALPIFQAAGVRLFGVPMTEEGIDLEA LEQTIRQHRIKMVMVNPSFQNPTGTVMPLRKREQLVKVCQTYQVPILEDDVFGQLSFIPK TEIPPLKKLDPDNVLYIGSLSKILGSTTKIGWLSAPASVTKQIAEARKMMDVSLSIFPQM LAKMAIEDPSFSEKITLLNKQVEQRATDVYQVFKSLPEWEVSPVKGGFYLWAHWRQGALK PEDWQVFLREGVLVAPSVAFSEKRGSIRLNCSRISPEEMPLFCERMVRITRQLSENRQTK IEH >gi|284795514|gb|ADDQ01000035.1| GENE 55 54247 - 55971 2338 574 aa, chain + ## HITS:1 COG:SPy1224 KEGG:ns NR:ns ## COG: SPy1224 COG1109 # Protein_GI_number: 15675188 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Streptococcus pyogenes M1 GAS # 1 570 1 568 572 714 61.0 0 MSWEQVYQQWLNEENIPENLKNELKDLNTDPEKCEDAFYAPLEFGTAGMRGILGAGINRM NIFTVRQATEGLARFMDTQDPETKRRGVAIAYDSRHMSPEFAMEAAKTLAKHDIPSFVFE SLRPTPELSFAVRYFKAFAGIMITASHNPAAYNGYKVYGEDGGQMPPADADALTKYVRSI ENPLKIDVLSDEEVAHSGLINIVGEEVDNAYLKEIKTVTINQELINEMGKELKLVYTPLH GTGKMLGEKALKQAGFEKFVLVPEQAVADPDFTTVKSPNPEEHSAFEYAIRLGEKEGADL LIATDPDADRLGAAVRMPNGDYQVLTGNQLGSIMIHYILEAHQQAGTLPQNAAVLKSIVS SELATAIAEKYNTKMFNVLTGFKFIAEKIQQYEEDHSQTFMFGFEESYGYLVKPFVRDKD AIQALVLLAEVAAFYKKQGKTLYDGLQDIFEEFGYFEEKTISVTMSGIEGSGKIKALMAK CREQAPTEFAGIQVAQTEDFKELTRTFADGQTEQLQTPPSDVLKYHLEDGSWIAIRPSGT EPKIKFYLATKATSSSEASEKIAAFEAVVNELTK >gi|284795514|gb|ADDQ01000035.1| GENE 56 56078 - 56860 1002 260 aa, chain + ## HITS:1 COG:SP0933 KEGG:ns NR:ns ## COG: SP0933 COG0345 # Protein_GI_number: 15900813 # Func_class: E Amino acid transport and metabolism # Function: Pyrroline-5-carboxylate reductase # Organism: Streptococcus pneumoniae TIGR4 # 1 257 1 256 265 170 38.0 2e-42 MKIGFIGAGSMGGAMIKGLLKAEAVKKEHLYVKGGSSGTAEALQKEWGFQLVTDYALFQE CKVIFIATGAKVVLPVLQELAPHFSNESLLISVATGHTIQEAQMALGNKEAKVVHAIPNT PVSVNQGVIGVALAPTIEGQTKDLVMELLATLGLVKEIREAQLETFGTVAGCSPAFVDIF MEALGDAAVLEGLPRDLSYEIVAQMIKGTATLALDTKKHPGALKDEVTSPGGSTIRGVVA LEKNGFRYAVMDAVQQANHE >gi|284795514|gb|ADDQ01000035.1| GENE 57 56998 - 57285 368 95 aa, chain + ## HITS:1 COG:BS_yozA KEGG:ns NR:ns ## COG: BS_yozA COG0640 # Protein_GI_number: 16078972 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 5 94 17 106 107 86 52.0 1e-17 MKQMEEIKQVSQLYKVLSDPTRLRILLLLKEGEHNVTAISEQLGMEQSAVSHQLKLLRDS RVVKARREGKTIFYTLDDHHVIDILNQTFEHIEHR >gi|284795514|gb|ADDQ01000035.1| GENE 58 57337 - 58629 1390 430 aa, chain + ## HITS:1 COG:lin2691 KEGG:ns NR:ns ## COG: lin2691 COG0460 # Protein_GI_number: 16801752 # Func_class: E Amino acid transport and metabolism # Function: Homoserine dehydrogenase # Organism: Listeria innocua # 1 427 1 426 428 479 57.0 1e-135 MKDTLKIGLLGLGTVGTGVLTLLKEHQEKISQVTGMNVVIEKAFVRNLETKQAQAEEYGL SLTTSIDDILEDKEIQIVVELMGTIEPAKTYIMKALEKGKHIVTANKDLLAQHGSELVAL AQKHHCDLYYEASVAGGIPILRTIANSLAADNIQQVLGIVNGTTNYMLTQMVSADKSYEE ALAEAQALGFAEADPTNDVDGIDAAYKMVILSQFAFGMNVSLPQVDIRGIRGLSLDDVAM AKQLGYEIKLIGSAEQNEHSISVEVAPMLVNQKHPIASVRNEYNAVFIKSAGVGESMYYG PGAGAKPTATSVVSDLITIAKNIRLATTGHMFNSYQHKTQLTSSENVFGQYYFSLDVPDT PGQFLQLTQLMTKAEVSFDQLVQQKSDGQRARIVAITHQISKAQMQQVVIAIQNTEAFQL LNVMKVIGDE >gi|284795514|gb|ADDQ01000035.1| GENE 59 58632 - 59687 1554 351 aa, chain + ## HITS:1 COG:lin2690 KEGG:ns NR:ns ## COG: lin2690 COG0498 # Protein_GI_number: 16801751 # Func_class: E Amino acid transport and metabolism # Function: Threonine synthase # Organism: Listeria innocua # 1 348 1 349 351 535 82.0 1e-152 MYEGLLKQYQAYLPVTEKTPMISLAEGNTPLIPLPNLSKELGIQLYGKYEGLNPTGSFKD RGMVMAVAKAVEEGAKAIVCASTGNTSAAAAAYATRAGIKAYVVIPEGKIALGKLAQAIM YGADIISIPGNFDEALKAVREIAKTEAVALVNSVNPYRLEGQKTAAFEVCEQLGQAPDVL AIPVGNAGNISAYWKGFKEWHEKQGTTLPRMHGFEAEGAAAIVKGQVIEQPETVATAIRI GNPASWQLAEQARDESGGFIDAVTDQEILTAYRKIAAQDGVFIEPGSAASLAGVIQHVKS GKIKAGETVVAVFTGNGLKDPDTAMETEVTISKMSDVEEMRLHLRKGVATL >gi|284795514|gb|ADDQ01000035.1| GENE 60 59684 - 60547 829 287 aa, chain + ## HITS:1 COG:lin2689 KEGG:ns NR:ns ## COG: lin2689 COG0083 # Protein_GI_number: 16801750 # Func_class: E Amino acid transport and metabolism # Function: Homoserine kinase # Organism: Listeria innocua # 1 287 1 287 288 335 56.0 4e-92 MKIRVPATSANLGPGFDSCGIALSAYLTINVLGESEFWEIQHTMGEEIPTNEENLLIQTA LKIAPELTPKVIRMVSDIPLARGLGSSSSVIVAGIELANRLAHLNLSPKEKVRLATEMEG HPDNVAPAILGDFVVASHVENQVYHVKHHFPMCDVIAFIPEEPLFTEKSRAVLPEKLTYK EAVAASSIANVMIAAILNGDLPLAGKMMEQDKWHETYRRSLVPHLKEIRRLTQQRGAYGS FLSGAGPTVLILSPEERTNEIVQSLEKLSTKASIQIFNIDQEGVQVF >gi|284795514|gb|ADDQ01000035.1| GENE 61 60590 - 61447 923 285 aa, chain - ## HITS:1 COG:BH1373 KEGG:ns NR:ns ## COG: BH1373 COG1806 # Protein_GI_number: 15613936 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 12 266 10 264 270 226 43.0 3e-59 MTISEEKKCVTIFVISDSAGETASKLAAASMAQYPTVDFTLIRRTFVKDEDKLVQALEDA KKAEAMVLHTIINDHLVAIANQFFNEHQLFHFDILTPPVAEIERLTGVAPMREPGALHHL NENYFKRIEAMEFAVKYDDGKDPRGFLEADVLLLGVSRTSKTPLSLFLANKNLKVANLPL IPEAHLPKQLFEMDPKKIVGLTNDPNVLNGIRKERMRAYGLPENTSYSDIEKIRRELAFA NDLYQKLGCIVIDVASLSIEETASMILNALNLEDHSYYSTETAED >gi|284795514|gb|ADDQ01000035.1| GENE 62 61552 - 61986 439 144 aa, chain + ## HITS:1 COG:BS_zur KEGG:ns NR:ns ## COG: BS_zur COG0735 # Protein_GI_number: 16079565 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Bacillus subtilis # 7 141 2 135 145 135 47.0 2e-32 MAPVKTNIEQALETMKASGLKYTKKRELLMSYLIKRNRYVSAREVYEFMNETFKGVSYDT VYRNLHDFERLELLEKTELNGEQKFRFRCCQEVEHHHHFICTVCGKTEEIHMCPMNFFEE QLKGCSIEGHRFEILGRCADCCEK >gi|284795514|gb|ADDQ01000035.1| GENE 63 62089 - 62328 400 79 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227519866|ref|ZP_03949915.1| 30S ribosomal protein S21 [Enterococcus faecalis TX0104] # 1 79 1 79 79 158 98 9e-38 MWVFPTNKKNGYFLSSEGGNNMSKTVVRKNESLDDALRRFKRSVSKAGTLQESRKREFYE KPSVKRKKKSEAARKRKKF >gi|284795514|gb|ADDQ01000035.1| GENE 64 62354 - 62803 420 149 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 [Lactobacillus johnsonii NCC 533] # 1 146 1 146 147 166 55 5e-40 MSLLTTLNDDIKTAMKAKDKETLAVLRMLKTAIQNDQIKAGRELNGEEELTVLSREMKQR KDSLSEFEKAGRDDLVEKVKVEIAIVEKYMPQQLTEEEIRQLVQEVMTQTGATSPKDFGK VMGAMMPKVKGKADGNQVNAIVKELLQEN >gi|284795514|gb|ADDQ01000035.1| GENE 65 62986 - 63960 1230 324 aa, chain + ## HITS:1 COG:SP0948 KEGG:ns NR:ns ## COG: SP0948 COG1702 # Protein_GI_number: 15900827 # Func_class: T Signal transduction mechanisms # Function: Phosphate starvation-inducible protein PhoH, predicted ATPase # Organism: Streptococcus pneumoniae TIGR4 # 5 317 2 314 322 413 65.0 1e-115 MTDNQSKSLELILTDSDDAHMLLGTHDKHIKFLEENTHVTINSRGEVIQLIGESSEVELV ASVLRALQTLIQRGIKVHTPDVVSALKMAKAGNLEAFIAMYEEEIMKDHHGRAIRIKNVG QKKYIDAVKTHDVIFGVGPAGTGKTFLAVVMAVAALKKGEVQKIILTRPAVEAGESLGFL PGDLKEKVDPYLRPVYDALYQIFGMDHTNRLMERGVIEIAPLAYMRGRTLDDAFVILDEA QNTTVAQMKMFLTRLGFSSKMIVNGDTSQIDLPRGVTSGLVNAERTLKDIEKIAFVNFEA SDVVRHPVVAQIIQAYEKEQQKHS >gi|284795514|gb|ADDQ01000035.1| GENE 66 63989 - 66187 994 732 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762592|ref|ZP_02169656.1| ribosomal protein S21 [Bacillus selenitireducens MLS10] # 20 730 26 748 750 387 33 1e-106 MKKVLTKLGDRLGKAYLPILLAVFSLLLFMIMFGSVHQKRVEIKEGQLAEKTIRANKNIE NTYETEQRKKLAAEAVTPEYIYQEDTASVQHNRIDKLFKLIDSANEKVDKEYSNKQAKAK KEETIPAPTVEERVASLKSLFESLPQDEVTFYQSFPNVFYQTIFTLTSEQLDKVRSESLM LVDDAMQNHVRESDLDKIRQEANGKIQYLDITSTMQQVIRYIVNQGIVVNDIANEKRTEE LRQKAMNAVQPAMIYQGEIIVREGTQIDAKAVEKLELLGMTSQNTSIFPMVALALAILLQ VEVLIFFTKQVTEPSRQRSFIIFYTGAMLISVILMKFFQIFQTEQLMYIPLFYPAAFAPL ILNHFVNRRSGIIAAIFQVVFALFIFYNSIGTNSLTVILIMYLFSGFLATVVKRKRMSEQ VFPALMWVVVFPVFMAVVLMIYQGMSLTDGKTWTALICASAGTVLSFLATMGLHPYIELL VTDDSMIVLNELSNPNHPLLKQLLEEAPGTYHHSMMVASLSANAVAEIGGRSLLTRVACY YHDIGKIKHANFFVENLPAGAENPHNFLLPEDSKQIIFGHVIDGAKILEEYNMPQMVIDI CRQHHGTTLMKFFYVKAKERNPEIKESDFRYPGPRPQTREAGIVSIADTCEAAVRAMDHP TNEKIQAFVHNVIQDRISDGQLDECGLTMKEIRIIEKSLINGLCSTFHSRIKYPKMKAEA EEMKDEQEKRDD >gi|284795514|gb|ADDQ01000035.1| GENE 67 66187 - 66666 718 159 aa, chain + ## HITS:1 COG:lin1502 KEGG:ns NR:ns ## COG: lin1502 COG0319 # Protein_GI_number: 16800570 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Listeria innocua # 1 159 4 161 161 175 64.0 3e-44 MDITFIDETEKVPTEEIKEIENLLQFAAGFLEIAEDTEMSVTFTDNAGIQVINRDYRGKD MPTDVISFALEDEGEDELPIIFDDEELAELPRNLGDLIISTERAAEQAVEYGHTLEREMG FLAVHGFLHLNGYDHMEPEDEKEMFGLQKEILDAYGLKR >gi|284795514|gb|ADDQ01000035.1| GENE 68 66650 - 67051 421 133 aa, chain + ## HITS:1 COG:L95012 KEGG:ns NR:ns ## COG: L95012 COG0818 # Protein_GI_number: 15673069 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Diacylglycerol kinase # Organism: Lactococcus lactis # 4 128 25 149 151 124 52.0 6e-29 MALKDEQTGKNKHFINSLEFAWQGIKTVFREERNMRKHVAFGVTAIVFGFLFSLTLAEWL WLLLAVFLVWLAEIINTIFENVVDMFTDFHFHPIGKKVKDMAAGAVLLTAGFAVLVGLIL FVPKILQIIQMWK >gi|284795514|gb|ADDQ01000035.1| GENE 69 67065 - 67967 1222 300 aa, chain + ## HITS:1 COG:SP0969 KEGG:ns NR:ns ## COG: SP0969 COG1159 # Protein_GI_number: 15900846 # Func_class: R General function prediction only # Function: GTPase # Organism: Streptococcus pneumoniae TIGR4 # 6 300 4 299 299 424 73.0 1e-119 MTTEHKSGFVAIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGIYTIPEAQIVFI DTPGIHKPKHRLGDFMVESAYNAMREVDATLFMVSADQKRGKGDDFIIERLKNNNSPVYL IINKIDKVHPDDLLSIIEDYSKQMDFKEIIPISATEGNNFEHLMDVLVEQMPEGPQYFPD DQITDHPEYFIVSELIREKVLLLTRDEIPHSVAVVVDSMKRDENDKVHVQATIIVERDSQ KGIIIGKGGKMLKQIGTKARQDIEYLLDDKVYLELWVKVQKDWRDKKIYLQDFGYRKEEY >gi|284795514|gb|ADDQ01000035.1| GENE 70 68050 - 68844 762 264 aa, chain + ## HITS:1 COG:L1006 KEGG:ns NR:ns ## COG: L1006 COG1381 # Protein_GI_number: 15672040 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Lactococcus lactis # 1 253 1 251 251 239 45.0 4e-63 MALGETKGIILFTKDFKEKDKLVKIFTESYGKLMFFVKGAHRKNNPLLPAILPFTEAVYI GNFREEGLSFLNSSKEVQPFRNIQQDIFINAYGTYILNLVDAAIEDQHYDPNLFQFTHMA LSALNEQKDPEIITNIFEIQLLERFGVRPEWHHCVACGETQGKFDYSSKYSGVLCEKHWY LDEQRYHADPRAIHFIRLFSQVSYEKVQNIQVKEETKKSIRETIDMLYDEYVGLHLKSKK FIDQMKTWENTLKIPPRKKEEKET >gi|284795514|gb|ADDQ01000035.1| GENE 71 69365 - 70273 1108 302 aa, chain + ## HITS:1 COG:SP1475 KEGG:ns NR:ns ## COG: SP1475 COG0752 # Protein_GI_number: 15901325 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, alpha subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 302 1 302 305 533 84.0 1e-151 MKNKLTVQEMILTLQKFWSSNGCMLMQAYDTEKGAGTMSPYTFLRAIGPEPWNAAYVEPS RRPADGRYGENPNRLYQHHQFQVVMKPSPENIQELYLESLKLLGIDPLEHDIRFVEDNWE NPSMGCAGLGWEVWLDGMEITQFTYFQQVGGLQCHPVTSEITYGLERLASYIQEVESVYD LEWTQGVKYGEIFVQPEYEHSKYSFEISNQEMLLENFDKFEKEAKRCIEESLVHPAYDYI LKCSHTFNLLDARGAVSVTERAGYLARIRNMARSVAKIFVAEREKLGFPLLNKDQHVSKE AE >gi|284795514|gb|ADDQ01000035.1| GENE 72 70275 - 72359 2799 694 aa, chain + ## HITS:1 COG:SPy1688 KEGG:ns NR:ns ## COG: SPy1688 COG0751 # Protein_GI_number: 15675548 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, beta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 694 1 679 679 670 52.0 0 MAKDLLLEIGLEEMPAHVVTPSRIQLEEKVIKFLDEHHLDYETVQSFATPRRLAVKVTAI PEKQVDVEEEVKGPAKKIALDAEGNWSKAAQGFVRGQGVTTEDIVFKELNGVEYVYVTKF TKGQSAKEVLTKLNDVITSLTFPVTMHWANYDFEYIRPIHWIVALLDDEVIPFKVLDVTT GQTSRGHRFLGDDVTFQHANEYEAKLKEQFVVVQPNERKQMIVDQANALAAEKNWQLALD EELLEEVTNLVEYPTAFVGSFDEKYLSVPDEVLVTSMKEHQRYFEVRNDQGLLMPHFIAV RNGDNVHLENVIKGNEKVLIARLEDAEFFYNEDKKLTIEACVEKLKNVTFHEKIGSIYEK MQRVALIAQIIGRKVGLSEEELEDLKRASEIYKFDLVTNMVGEFPELQGIMGEKYALLQG EKPAVATAIREHYLPTSSEGELPETAIGAVLALADKLDSVFSFFSVGMIPTGSNDPYALR RQTYGVIRIIEDKGWTFPLVQLQTEVDEAVNQDVEKYGVLLNEGQAEVVEFVKARLRQLL MTKNVRHDIIDAVVSAEQADLSKLFASANILKSRFEDQDFKPSMEALTRVINLAKKGQEL LGDTEEGIDPSLFENKAEKELYQAVNDLSEAFATRTIAENYEALVNLRPLIDAYFNETMV MVEDEKVKQNRLKQLMQIAKMALSIASLDLLIVK >gi|284795514|gb|ADDQ01000035.1| GENE 73 72399 - 72590 291 63 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227553937|ref|ZP_03983984.1| ## NR: gi|227553937|ref|ZP_03983984.1| conserved hypothetical protein [Enterococcus faecalis HH22] # 1 63 1 63 63 108 100.0 1e-22 MLETTFEQILTQLSKPAVRALTNEKIDSVDELYARGRKALLSLHGFGPKSIRTIEEMTGK ELK >gi|284795514|gb|ADDQ01000035.1| GENE 74 72625 - 73557 1110 310 aa, chain - ## HITS:1 COG:SPy0351 KEGG:ns NR:ns ## COG: SPy0351 COG0706 # Protein_GI_number: 15674505 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Streptococcus pyogenes M1 GAS # 4 310 5 307 307 261 46.0 1e-69 MRKLNRWLYGSGLLFLVMFLSGCVKTGADGQPTGEGFVYNFLVLPMSNAITYLVDNFNWN YGWAIIFITIIVRIIILPLGLHQSKKSFIQTEKMQAIKPQVDVAQAKMKQASTREEQMAA QAELQKIYKENNVSMVGGIGCLPLLIQMPIFSSLFFAARYTKGIATASFLGMNLGQPNMI LVALAGLAYLAQGYISMIGIPEEQKKTMKSMLIVSPLMIVFMSFSSPAGVALYWVVGGIF TCIQSAITNILLRPRIKKQVQEELKNNPPKQVVTPIKDVTPKETNKVTQKTNQPKANGNK GRNAGKQKRK >gi|284795514|gb|ADDQ01000035.1| GENE 75 73724 - 73999 385 91 aa, chain - ## HITS:1 COG:lin1418 KEGG:ns NR:ns ## COG: lin1418 COG1254 # Protein_GI_number: 16800486 # Func_class: C Energy production and conversion # Function: Acylphosphatases # Organism: Listeria innocua # 6 90 8 92 93 76 47.0 1e-14 MEKLRMNVQGRVQGVGFRYMTKMVADQLGVTGSVKNEDDGSVSITAIAPEDIMETFIKKI KDSPSPAGRVTYVDIQEDPLLEETEQFKVIQ >gi|284795514|gb|ADDQ01000035.1| GENE 76 74106 - 74882 206 258 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 26 252 3 240 255 84 27 3e-15 MKEITSTKNNQLKEWKKLHKKKYREELNQYIIEGFHLVEEAVKANADVQWILFNQRGQQE WGTWLAEQETEKLIFVSDEVLNSLSELPTSQGILAIVTLETQQEQSLSFKGGWLLLDNIQ DPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSMQGSHYHLPVLQRELTEVVQAFK KQGLPVFGTELNEAAIAYYEQEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAES LNVAIAAGVLMFYFENNQ >gi|284795514|gb|ADDQ01000035.1| GENE 77 74902 - 75339 523 145 aa, chain + ## HITS:1 COG:CAC1468 KEGG:ns NR:ns ## COG: CAC1468 COG0454 # Protein_GI_number: 15894747 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Clostridium acetobutylicum # 9 142 4 140 142 96 37.0 2e-20 MLTIKKTTQLTEKELETIMAIWLQTNLEAHPFVAPTYWQENKAFVRAALPKATLILAEEE DQIIGFLGLMDNYIAGIFIKKAFQGKGIGQKLLQVAKEEQDLLSLAVYRENQAAYAFYQK QGFVQQKRTIDETGNEECHLVWQAQ >gi|284795514|gb|ADDQ01000035.1| GENE 78 75523 - 76308 1336 261 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29376895|ref|NP_816049.1| 30S ribosomal protein S2 [Enterococcus faecalis V583] # 1 261 1 261 261 519 100 1e-146 MAVISMKQLLEAGVHFGHQTRRWNPKMKKYIFTERNGIYIIDLQKTVKLVDAAYDYMKNV AEEGGVALFVGTKKQAQEAIKDEAIRAGQYYVNHRWLGGTLTNWDTIQKRIARLKKINAM EEDGTFEVLPKKEVAGLNKERERLEKFLGGIADMPRIPDVMYIVDPRKERIAVQEAHKLN IPIVAMVDTNCDPDEIDVVIPSNDDAIRAVKLITAKMADAFIEGNQGEDQATEELFVEET PEATSIEEIVDVVEGNNESAE >gi|284795514|gb|ADDQ01000035.1| GENE 79 76414 - 77295 582 293 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts [Haemophilus influenzae R2866] # 1 287 1 275 283 228 44 7e-59 MADVTAKMVKELRDMTGVGMMDAKKALVKVEGDMEKAVDFLRENGMAKAAKKNDRIAAEG LANVATVGNVAAIVEVNSETDFVSKNEMFQDLVKDIATKVAENKPATMEEAMAIKTEKGT IESDLIEATTVIGEKISFRRFEVVEKADNAAFGAYLHMGGRIAVLTVIDGTTDEEVAKDV AMHIAAINPRYVNESQIPQEELEHEKAVLTEQALNEGKPANIVEKMVVGRLQKFKAEIAL VDQPFVKDPDMTVEKFVASKGGEVKSFVRFEVGEGIEKREDNFADEVMSQMKN >gi|284795514|gb|ADDQ01000035.1| GENE 80 77556 - 78278 998 240 aa, chain + ## HITS:1 COG:lin1350 KEGG:ns NR:ns ## COG: lin1350 COG0528 # Protein_GI_number: 16800418 # Func_class: F Nucleotide transport and metabolism # Function: Uridylate kinase # Organism: Listeria innocua # 1 240 1 241 242 358 76.0 5e-99 MVKPKYQRVVLKLSGEALAGEDGFGIKPPVIKEIVQEIKEVHELGIEMAIVVGGGNIWRG QIGAQMGMERAQADYMGMLATVMNALALQDTLENLGVPTRVQTSIEMRQIAEPYIRRRAE RHLEKGRVVIFAGGTGNPYFSTDTTAALRAAEVDADVILMAKNNVDGVYSADPRVDETAT KFEELTHLDVISKGLQVMDSTASSLSMDNDIPLVVFNLNEAGNIRRAILGENIGTTVRGK >gi|284795514|gb|ADDQ01000035.1| GENE 81 78282 - 78839 917 185 aa, chain + ## HITS:1 COG:lin1351 KEGG:ns NR:ns ## COG: lin1351 COG0233 # Protein_GI_number: 16800419 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome recycling factor # Organism: Listeria innocua # 1 185 1 185 185 213 70.0 2e-55 MSKEVLATAKEKMTKAEESLRRELGQIRAGRANASLLDRIQVEYYGAPTPVNQLASINIP EARVLMITPFDKNSIADIEKAIQMSDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKE AENSKVAVRNVRRDAMDELKKAQKNGDITEDELRSFEKDVQKLTDDSIKNIDAITAEKEQ ELLEV >gi|284795514|gb|ADDQ01000035.1| GENE 82 79209 - 79979 194 256 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 3 228 1 221 245 79 27 7e-14 MSVLEIKNLHVSIEDKKILKGVDLTINTGEIHAIMGPNGTGKSTLSAAIMGNPNYEVTEG EILFDGVNVLDLEVDERARLGLFLAMQYPSEIPGITNAEFMRAAINAKRDEDNKMSVMQF LKKLDSKMELLNMPEEMAERYLNEGFSGGEKKRNEILQLLMLEPTFAILDEIDSGLDIDA LKVVSKGVNEMRGENFGALIITHYQRLLNYITPDVVHIMMEGRVVKTGGADLAKRLETEG YAGISQELGIDYKEEA >gi|284795514|gb|ADDQ01000035.1| GENE 83 79994 - 81280 1449 428 aa, chain + ## HITS:1 COG:SPy0287 KEGG:ns NR:ns ## COG: SPy0287 COG0719 # Protein_GI_number: 15674461 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Streptococcus pyogenes M1 GAS # 11 426 4 417 420 491 59.0 1e-139 MKKVNLMDYLDEVTAFSLEHEEPAWMTELRTTALKNADESELPHIDRVKFHRWPLLNVHM ESYVPSEGNVASFDQMKDNPLIVQQGSFHAFEQLPASLAEQGVIFTDIFTALQEHPELVK EYYMTKAVLPEEDKLTAAHAAFMNSGVFLYVPKNVVIEEPIESLFIQDSDSNQPFFKHVL IVADNHSEFSYLERFQSTGHHAEKASGNIVVEVIAKDGAKVKYSAVDQLGQTVTTYMNRR GYIMRDASVDWALGVMNDGDVVADFDSDLVGEGAHSEVKVVAISAGKQTQGIDTRVTNKA PHSIGHILQHGVIRERGTLTFNGIGHILKGAKGADAQQESRVLMLSDKARGDANPILLID ENEVTAGHAASVGRVDPEEMYYLMSRGLRKEEAERLVIRGFLGSVITAIPVKEVQNEFVE VIEGKLNA >gi|284795514|gb|ADDQ01000035.1| GENE 84 81277 - 82512 1555 411 aa, chain + ## HITS:1 COG:SP0869 KEGG:ns NR:ns ## COG: SP0869 COG0520 # Protein_GI_number: 15900752 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Streptococcus pneumoniae TIGR4 # 1 411 1 408 408 582 68.0 1e-166 MMDAATIRQSFPILFQEVNDEPLVYLDNAATTQKPTAVLDVLRHYYETDNANVHRGVHTL AERATKDYEASREKVRQFIHAKETAEVLFTRGTTTSLNWIAKSYGDLAVTAGDEIVISYM EHHSNIIPWQQLAQRTGAILKYIDVTEDGFLDMASARQQITEKTKIVSIAHVSNVLGVIN PIEELTQLAHQNGAVMVVDGAQAVPHMPVDVQAIDADFYAFSGHKMCGPTGIGVLYGKRH LLEQMEPVEFGGEMIDFVHLQESTWKELPWKFEAGTPNIAGAIALGAAIDYLTEIGLEAI HQHEAALVHYVLPKLQAIEGLTIYGPQDPKDHTGVIAFNIDGLHPHDVATALDMEGIAVR AGHHCAQPLLNYLSVPATARASFYLYNTKEDADRLVEAIKATKEFFQHGTF >gi|284795514|gb|ADDQ01000035.1| GENE 85 82499 - 82966 603 155 aa, chain + ## HITS:1 COG:SPy0289 KEGG:ns NR:ns ## COG: SPy0289 COG0822 # Protein_GI_number: 15674463 # Func_class: C Energy production and conversion # Function: NifU homolog involved in Fe-S cluster formation # Organism: Streptococcus pyogenes M1 GAS # 1 147 1 146 159 164 57.0 7e-41 MALSKLDNLYRQVILDHSSHPHHHGTLDASSQTIELNNPTCGDVIELDVAIEDGVIKDIA FQGSGCSISTASASMMTDAVLGKTIAEATALAEDFSQLVQGNEVAEDEKLGDAAMLSGVA KFPARIKCATLAWKALEQAVANNGQGEAGHLHCEK >gi|284795514|gb|ADDQ01000035.1| GENE 86 82985 - 84379 1557 464 aa, chain + ## HITS:1 COG:SP0871 KEGG:ns NR:ns ## COG: SP0871 COG0719 # Protein_GI_number: 15900754 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Streptococcus pneumoniae TIGR4 # 6 464 12 470 470 801 87.0 0 MSTVPELEEYKFGFHDDVEPVFSTGDGLTEDVVREISRVKGEPEWMLDFRLKSLEQFNKM PMQEWGPDLSDIDFSKIKYYQKPSDKPARDWDDVPDKIKETFEKIGIPEAERAYLAGASA QYESEVVYHNMKEEFEKLGIIFTDTDSALKEYPDLFKEYFSKLVPPTDNKLAALNSAVWS GGTFIYVPKGVRVDVPLQTYFRINAENTGQFERTLIIVDEGASVHYVEGCTAPTYSSNSL HAAIVEIFTRKDAYCRYTTIQNWSDNVYNLVTKRAKAYEGAIVEWIDGNLGAKTTMKYPS VYLDGKGARGTMLSIAFAGANQIQDTGAKMIHNAPNTSSSIVSKSIAKDGGEVNYRGQVT FGKDSAGSISHIECDTIIMDEKSKSDTIPFNEIHNSQVSLEHEAKVSKISEEQLYYLMSR GLSEAEATEMIVMGFVEPFTKELPMEYAVELNRLISYEMEGSVG >gi|284795514|gb|ADDQ01000035.1| GENE 87 84540 - 85142 651 200 aa, chain - ## HITS:1 COG:HI0522 KEGG:ns NR:ns ## COG: HI0522 COG2364 # Protein_GI_number: 16272466 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Haemophilus influenzae # 5 198 24 211 218 80 26.0 2e-15 MKLVKNVLLILIGLVIIGIGASTLRVAGLGVDPFTAMNIGLSSMFGMQLGIFQIIVNAFI LFYVYLKNKKAIGLGTILNMLLVGILIQQISTWLQPYADSLGGSTIGKLLSLFVGVLIFT FGCSLYMATDQGESPYDAIAPTICQQINKPYASVRKAQDLFVLLIGFIAGGPIGIGTIIC AFGAGPLISFWNKLLQPLVK >gi|284795514|gb|ADDQ01000035.1| GENE 88 85227 - 86006 245 259 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 8 246 4 238 242 99 31 9e-20 MYGELHGKVAVVTGAATGLGLFITLRYILEGMNVVADYVGELPKEFEDVQAKHADRVKFV KADVSNEEDIKALAETALKEFGHVDIWVNNAGVEASFPTIDMPLKEWQRVIDVNLNGVFL GSREALRIFRDQKIKGSIINMSSVHQRIPWPTFAHYAASKGATEMFTKTIALEYAEYGIR ANCIAPGAINTPINAEKFSDPEQLKQTTSMVPMGIIGKPNQVAAAAAWLASDESSYVTGT TLFVDGGMSLYPSFQHGAG >gi|284795514|gb|ADDQ01000035.1| GENE 89 86295 - 86375 57 26 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MATVLSKQLHWFIGKGTEQVLRDFPM >gi|284795514|gb|ADDQ01000035.1| GENE 90 86422 - 87690 1340 422 aa, chain + ## HITS:1 COG:SP0263 KEGG:ns NR:ns ## COG: SP0263 COG0750 # Protein_GI_number: 15900197 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane-associated Zn-dependent proteases 1 # Organism: Streptococcus pneumoniae TIGR4 # 1 422 1 418 419 415 51.0 1e-115 MKTIITFIIVFGILVLVHEFGHFYFAKRAGILVREFAIGMGPKIFAHRGKDGTTYTIRLL PIGGYVRMAGMGEDMTEITPGMPLSVELNAVGNVVKINTSKKVQLPHSIPMEVVDFDLEK ELFIKGYVNGNEEEETVYKVDHDATIIESDGTEVRIAPLDVQFQSAKLSQRILTNFAGPM NNFILGFILFTLAVFLQGGVTDLNTNQIGQVIPNGPAAEAGLKENDKVLSINNQKIKKYE DFTTIVQKNPEKPLTFVVERNGKEEQLTVTPEKQKVEKQTIGKVGVYPYMKTDLPSKLMG GIQDTLNSTTQIFKALGSLFTGFSLNKLGGPVMMFKLSEEASNAGVSTVVFLMAMLSMNL GIINLLPIPALDGGKIVLNIIEGVRGKPISPEKEGIITLIGFGFVMVLMVLVTWNDIQRF FF >gi|284795514|gb|ADDQ01000035.1| GENE 91 87762 - 89480 2277 572 aa, chain + ## HITS:1 COG:lin1356 KEGG:ns NR:ns ## COG: lin1356 COG0442 # Protein_GI_number: 16800424 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Prolyl-tRNA synthetase # Organism: Listeria innocua # 1 564 1 564 568 727 62.0 0 MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREE FEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRD EINSYKRLPLNLYQIQTKYRDEKRPRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKA YSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTICYSTESDYAANLEMATSLY TPKKSHETQLDLEKIATPEVGTIAEVANFFEVEPQRIIKSVLFIADEEPVMVLVRGDHDV NDVKLKNFLGADFLDEATEEDARRVLGAGFGSIGPVNVSEDVKIYADLAVQDLANAIVGA NEDGYHLTNVNPDRDFQPISYEDLRFVQEGDPSPDGNGVLAFTKGIEIGHIFKLGTRYSD AMGATVLDENGREKSVIMGCYGIGVSRLLSAIVEQNADERGINWPTGIAPFDLHVVQMNV KDEYQTKLSQEVEAMMTEAGYEVLVDDRNERAGVKFADADLIGCPIRITVGKKAVDGVVE VKIKRTGEMLEVRKEELESTLSILMNTTSEVE >gi|284795514|gb|ADDQ01000035.1| GENE 92 89731 - 94086 4321 1451 aa, chain + ## HITS:1 COG:lin1357 KEGG:ns NR:ns ## COG: lin1357 COG2176 # Protein_GI_number: 16800425 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit (gram-positive type) # Organism: Listeria innocua # 3 1448 6 1444 1444 1831 61.0 0 MTEKARDLFDKLMTQIQLDDTAKEHPLIQNGRIDKVIVHQQSRLWEFHLSFDELMPVMLY QTFMQQLELAFQQIAQVSVQITTNQTTFTEEQLTDYWQLALLNSQCNTPLVQKVLKTQTP QFEDRKIILPVDNEAVIPYLKQQYLPIIEELYFSYGFPKFHIEPKMDQQQAAEVLKKFEE QKLEQAAAFQQQAAESLVKHEQMKKEKQQQAPAFDGPIRLGRNIPNDEPIMPMGNILEEE RRITIEGFIFDKEVRELRSKRKILILKITDYTSSFVVKKFSNGEKDEQVFDAIQPQSWIR VRGSVQEDTFMRDLVMNAQDLMEVAHAPRKDYAPEGEKRVELHMHSNMSTMDATNKVGDL VVQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILYGVEANIVDDGVPIAYNEEHIE LTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVIETFEQFIDPGHPLSQTTINLTGI TDEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLE LSRFLYPHFKSHRLNTLSKKFGVNLEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHDD LNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLISMSNVDYFFRVPRIPRSQLSKLRE GLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEVMPKPVYAPLIEQELVKNEADLEE IISNLVKIGDELGKLVVATGNVHYLNEEDAIYRKILVGSMGGANPLNRHSLPKVHFRTTD EMLTEFQFLGQDVAKRIVVENPNKVADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRAR ELYGDPLPEIVEKRLEKELNSINGNGFSVIYLISQKLVHKSNEDGYLVGSRGSVGSSFVA TMTGITEVNPLAPHYYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFET FLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGYER DHNLHLRGAEIDRLAKGSTGVKRTTGQHPGGIIVIPDYMDVYDFTPIQYPADDQEAEWKT THFDFHSIHDNILKLDILGHDDPTVIRMLQDLSGIEPKTIPTDDPEVMRIFEGPDVLGVD AEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHGTDVWLGNAEELIRRG EANLAEVIGCRDDIMVYLIHAGLDSGMAFKIMETVRKGQWNKIPDELRDTYLNAMKENNV PDWYIDSCSKIKYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQ GKEAVKARMKEITDKGMDASTKEKNLLTVLELCNEMLERGYKFGMIDLYKSDAENFVIEG DTLIAPFRAVPSLGLNVAKAIVAAREEQPFLSKEDLATRGKVSKTLIEYMNENGVLKDLP DENQLSLFDML >gi|284795514|gb|ADDQ01000035.1| GENE 93 94297 - 95754 1488 485 aa, chain + ## HITS:1 COG:L119780 KEGG:ns NR:ns ## COG: L119780 COG0531 # Protein_GI_number: 15673092 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Lactococcus lactis # 1 477 1 477 488 682 76.0 0 MDKKQLRWFTVGLIAFNMVWGLGNVVNNYAQQGISVVTSWLLILVLYFIPYALIVGQLGS TFKDSNGGVSSWVQNTSTKRLAYYAAWTYWVVHIPYLAQKPQAILIALGWAVQGNGNLVN TMPIVTVSFISLIIFLVFLLLSTKGLTTLKVIGGLAGTAMFVMSILFILLAVGAPFINST VEFATPNMSQVSTYIPKFDFSYFTTVSMLVFAVGGAEKISPYVNATKNPAKEFPKGMIFL AAMVGLSAVLGSFAMGMLFSSDNIPKDLMANGAYSAFQKLGAYYGVGNLLMIVYALTNTV GQVAALAFSIDAPLKILLAEADPEFVPSWLRKRTKKGTLINGYLLTGILVSIIIALPMFG LKDMNEVVKWLTNLNSVVMPMRYLWVFFAYMLLNKAYKQFNSEYKFVKNPKIGFVFGLWC FLFTAFACILGMVPKFEYASDPQGWLFQLASNIVTPIVLILLGMILPAIARREKKDTILP IDSAE >gi|284795514|gb|ADDQ01000035.1| GENE 94 95974 - 97350 1336 458 aa, chain + ## HITS:1 COG:no KEGG:EF2376 NR:ns ## KEGG: EF2376 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 458 1 437 437 695 94.0 0 MTKTLETQPEEKTVFLCKETNPDFLGREIYADNVETPYNFYLIRKLYLAKEYQNLAEGEQ FFEALCESWDESEQFEELIVKKIYVYVETELMYYTVYFGSFEPTTRDLRFALKQWMYEIP TTKNKKTVRMNETNVQVVPQENQLTELAGEIAVLREMLTLLKENLASLNESVNQTRNPVI SRQIKTIHLKRASPVIAAEQASLKVSEDANLEQPDVNLSPDNRENQEGETTVATSEAVLP VNKLVLEEPAKEPVLSEPAPIKEALPEKKQENQQSTAAKPLFTFPQETEKSSLNSVNESA EKEEEQKPEKEAVSMESEKENSSSRTIPADFQRQLDELEEEIYRRFMSRQLEDTDGNQAV PKITIEKRQLEAQMFEAKAFSQSFKQVQKKKAGDVRICNQLSCMKLEKGLDKFLDEVTEY VEKRTLFNKKVRCPLPVIRELEGYGQLNQYMQKILDCY >gi|284795514|gb|ADDQ01000035.1| GENE 95 97549 - 100320 2523 923 aa, chain + ## HITS:1 COG:BH1691_2 KEGG:ns NR:ns ## COG: BH1691_2 COG1199 # Protein_GI_number: 15614254 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Bacillus halodurans # 255 900 36 696 716 306 30.0 1e-82 MKDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQEGKIIANFATDVNPNQVVPKQIQSLTG ISNTQVQKAPYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTV ELAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK IAELSQQTARETSAFIQQTYEQMKKQVTPLNPAYQVVSGIALRKKEVPLFEETFYQTSTY PKTKKAKEKLFGERFAYRAEQSRMMNLVYDHFTEGTTKDLFIEAATGTGKTLGYLLPMSY LATPEKPVIISTVSIVLQNQLVEKDLPLANQICQGKLRGIVIKSHRHYLDLQRFKATLNQ PTPQKQYALYQMGVLVWLLETETGDLDELQLTNLNHLFWKEVTHRGLDFLSKKDELYEVD FLRHLYKKVAQSNVLIVNHAFLAQESLRKQPLLPESPWLIIDEAHHLPDIASRMASERVN SVILKKQVTHFIEKEQLFVALQQIFQQFSEEQRLVKIYRQGLLDFVDEWQDFLFELHRLF SKTQKRIDHQELLLTKERIDYLSAAGEKHSQTLQLLLQELLTIQSKLQQTIMSQLETFSL ADRIVFVRLFQFFDEIERIHHCFTIYLDDWRPRWVKEYLPQNEDHGLIEIHDLEASLLPE TKWYPRYERIIYTSGTLKFGNNKKYLPQRLGLTEVTFKTLPTPYNYAENARVYVPEEAVA IQNASSYEMGQYISDTIEKLMAQEERSMLVLFTSHELLSTVYHQVQPRLLEKGQEVLAQG ISGSREKILKRFSNGKPNVLLGADSFWEGVDLPGTALQLLIVTRLPFENPKRPLVQAKYA YLEAEGIQPFAQEAVPKAALRLRQALGRLIRSEEDRGALLILDRRLVTAKYGKRLIKAFP KGLSVKEAPMPEILEELKGFLNK >gi|284795514|gb|ADDQ01000035.1| GENE 96 100408 - 100914 517 168 aa, chain + ## HITS:1 COG:lin2012 KEGG:ns NR:ns ## COG: lin2012 COG5353 # Protein_GI_number: 16801078 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 32 160 35 165 173 74 35.0 7e-14 MEELEEKKEKKRITVLLTLLAILLAILVTIIIFFVRTNQPMAQAKKEATAIAKTSANLET VDKFYWFTRKNTYFTLTGKNDKGTEIVVIVPKSGEKVTVLNQKDGQTEQQITDIVAKAHP DESVMKATLGLYDKRPAWEVVTENDQGVLTYYLMSFDKGEEINVVKDI >gi|284795514|gb|ADDQ01000035.1| GENE 97 100953 - 102152 1233 399 aa, chain + ## HITS:1 COG:SP1544 KEGG:ns NR:ns ## COG: SP1544 COG0436 # Protein_GI_number: 15901387 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 390 1 390 395 530 67.0 1e-150 MNVSNRAQQLTPSVTLAAAAKAKALKAKGVDVLSLTVGEPDFVTPKNIQKAAIASIEDGR ASYYTPSGGIPELKQAIVSYVEREYQLCYQPKQVIVTDGAKYALYLLFQAILNVGDEVII PVPYWVSYGEQVKLAEGKPVFVSSTQEQSFKVSVAQLEAVRTDKTKAIILNSPSNPTGVI YTEEELRQIGEWAVAHDILIIADDIYGRLVYNGHRFTPIATISEAIRQQTIIINGVSKTY AMTGWRIGFAVGDEKIIQAMTQLASQSTSNPVAVSQYAAIEALTGEQSTVEDMRQAFEKR LNHIYPKVAALPGVSLIKPEGAFYLFPNVKKTLEICGYDNVTNWVEDLLQEAHVALVTGE GFGAPEHVRMSYATDLMTLEKAIERMNDFIEKKRIQHNA >gi|284795514|gb|ADDQ01000035.1| GENE 98 102187 - 103521 1466 444 aa, chain + ## HITS:1 COG:L0345 KEGG:ns NR:ns ## COG: L0345 COG0017 # Protein_GI_number: 15673810 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl/asparaginyl-tRNA synthetases # Organism: Lactococcus lactis # 4 444 5 447 447 666 71.0 0 MEQIQIIDSNKHVGETVKIGAWIANKRSSGKIAFLQLRDGTAFFQGVVFKPNFIEVFGEE AGTEKFQEIKHLSQETAVMVTGVIKEDSRSKFGYEMDITDLEVVGASEDYPITPKEHGTD FLMDHRHLWLRSSKQHAIMLVRNEIIRATYEFFNEQGFIKIDSPILTGSAPEGTTELFET DYFGQPAFLSQTGQLYAEAGAMAFGKVFTFGPTFRAEKSKTRRHLTEFWMIEPEMAYTTH EESLDIQEAYVKHLIKSVLKNQQYPLDVLERDTALLEKYVSEPFKRITYDDAIELLQKEE ANNDYDHIEWGEDFGSPHETFISNYYGVPTFILNYPKAIKAFYMKPHPTREDVVICADLI APEGYGEIIGGSERATDYDYLKEKVAEFGLSEEEYSWYLDLRKYGSVPHSGFGLGLERAV TFITGNEHIREAIPFPRMLNRIYP >gi|284795514|gb|ADDQ01000035.1| GENE 99 103634 - 104053 373 139 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256961325|ref|ZP_05565496.1| ## NR: gi|256961325|ref|ZP_05565496.1| predicted protein [Enterococcus faecalis Merz96] # 1 139 1 139 139 171 100.0 2e-41 MVFFGFLFIFLLSVILFVSDRYTMKYVLWIILAVTWKNLFIFKLISYSINDSGFFYMIYD ILVIPLFFIMTGVVLLIESFYKKTRSFIPEALLVLTFALLGSSYGETVLSEVTPSWLMIQ LIVVVYFCYLLLQNLTEKK >gi|284795514|gb|ADDQ01000035.1| GENE 100 104111 - 104515 163 134 aa, chain + ## HITS:1 COG:no KEGG:EF3145 NR:ns ## KEGG: EF3145 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 5 131 14 147 150 98 54.0 6e-20 MISTHLFAYEDIIGSLLAFLGLLYAIRTESIIRYFVLTIVAIIWINPVLFKNYIVVLSNI FLQFMFIPLFLLSLSIIFLTEKENRLFCIPIIFLVFLVFSQATWLYEYNTELRVSAVFMI LLGIYLKLVKIIKQ >gi|284795514|gb|ADDQ01000035.1| GENE 101 104560 - 105519 1117 319 aa, chain - ## HITS:1 COG:CAC3400 KEGG:ns NR:ns ## COG: CAC3400 COG0673 # Protein_GI_number: 15896641 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Clostridium acetobutylicum # 7 317 5 315 322 321 50.0 9e-88 MTKKLYQWGIVGLGGIAHEFASTFKQETSQLAAVASRTLSKAEQFAADYSIPKAYGSYEE LLADETIDVVYIAVPNKQHAEHILKALQAGKHVLCEKAITMNAAELKQALAVAEKNDLIL AEAMTIFNMPLYDELRRLMDAGKFGQLKMIQAPFGSYKEPDPKNRFFNPDLAGGALLDIG TYAVSFARWFLSSQPDVLASSMVPFSTGVDEQSVTLLRNKENELATISLTFQAKMPKQGI VAFEDAYITITDYPRADEAIVHYNDGTVETIVSGYSAEAMNYEIYNMVEAIKGTQPNRSL FFTTEVIDILDQMQKLWQA >gi|284795514|gb|ADDQ01000035.1| GENE 102 105692 - 106210 702 172 aa, chain + ## HITS:1 COG:no KEGG:EF2369 NR:ns ## KEGG: EF2369 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 172 1 172 172 313 100.0 1e-84 MHQVYVDIIVDAIIEQYQTEENFYSAYQIQAADWQAWKEGQFGLDNEVMQKIKNLFTDYE WMLTQKILRQTILFPEKRNLAVSEYKRLKTTIAKKWLQSDLGVVELIPNNKQEQEIAAGY IDLKVTLAYGEWGFDDIITFRLPATIQRQLEGSKVELLDWVNENLMDTYVGE >gi|284795514|gb|ADDQ01000035.1| GENE 103 106231 - 106449 227 72 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKYTIAGILSVIIMFGAVIFVFFGKKPVEESVHTSTETTVKSSTKISESSTVSSTATTES STEITSVSSDES >gi|284795514|gb|ADDQ01000035.1| GENE 104 106549 - 107190 782 213 aa, chain + ## HITS:1 COG:L2183 KEGG:ns NR:ns ## COG: L2183 COG1705 # Protein_GI_number: 15673347 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Lactococcus lactis # 12 213 7 205 209 172 45.0 4e-43 MKWGINEVSNYQKKRKKQLNLPKLFLGVVVVGLAFVFSLSVLSDSDKGQSESVNRQNENI SKEEFVAEITPYARELQESYGVLPSIIMGQAVLESNFGQSQLASKYNNLFGIKAYGNQPK VNLETKEYVNEVWITIQGDFRVYDNWEESMRDHTKLFVDGVDWDPNLYEKVLLAKNYKEA AQALQDAGYATDPTYADKIIHVIEEYNLNKYDR >gi|284795514|gb|ADDQ01000035.1| GENE 105 107210 - 107896 978 228 aa, chain + ## HITS:1 COG:no KEGG:EF2366 NR:ns ## KEGG: EF2366 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 228 1 228 228 405 100.0 1e-112 MSEKWIPEIMTPLKQDIVKMPEIIRQASGIKIFGRKIKSIIFTTDIAIIRNTDAQAVIAV YPFTPHPAITKGIIEAADIPVFSGVGGGLTQGMRSAYMSLFAEAQGSMGVVLNGPTPIET IKMVDEAIDIPIISTVTSIHTPIDEKLAAGVDMINISAGKDTAATVRYFRGKYPELPIIA TGGPTESSIHETIIAGANAITYTPPSNGELFSKKMKKYREQEKATDEE Prediction of potential genes in microbial genomes Time: Sun May 15 12:45:27 2011 Seq name: gi|284795513|gb|ADDQ01000036.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont77.2, whole genome shotgun sequence Length of sequence - 69457 bp Number of predicted genes - 70, with homology - 64 Number of transcription units - 30, operones - 16 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 250 - 309 5.3 1 1 Op 1 7/0.111 + CDS 400 - 981 861 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 2 1 Op 2 . + CDS 984 - 2303 432 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 2322 - 2355 -0.9 + Prom 2328 - 2387 3.3 3 2 Op 1 . + CDS 2500 - 2604 76 ## 4 2 Op 2 3/0.111 + CDS 2631 - 3746 1285 ## COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) 5 2 Op 3 . + CDS 3789 - 5084 1728 ## COG0015 Adenylosuccinate lyase + Term 5088 - 5133 12.3 + Prom 5342 - 5401 9.1 6 3 Op 1 . + CDS 5470 - 6531 785 ## EF2253 hypothetical protein 7 3 Op 2 . + CDS 6562 - 11208 3155 ## EF2250 hypothetical protein + Term 11284 - 11319 3.3 + Prom 11293 - 11352 10.0 8 4 Tu 1 . + CDS 11397 - 11768 414 ## COG2259 Predicted membrane protein + Term 11821 - 11862 3.3 + Prom 11951 - 12010 9.0 9 5 Tu 1 . + CDS 12039 - 14645 1614 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 14651 - 14684 5.4 - Term 14629 - 14679 13.3 10 6 Op 1 . - CDS 14680 - 15159 535 ## COG3613 Nucleoside 2-deoxyribosyltransferase 11 6 Op 2 . - CDS 15183 - 16403 1154 ## COG4552 Predicted acetyltransferase involved in intracellular survival and related acetyltransferases - Prom 16550 - 16609 6.8 + Prom 16473 - 16532 7.0 12 7 Tu 1 . + CDS 16650 - 18488 2070 ## COG0481 Membrane GTPase LepA + Term 18512 - 18579 24.4 + Prom 18626 - 18685 13.9 13 8 Tu 1 . + CDS 18745 - 19578 813 ## EF2239 hypothetical protein + Term 19583 - 19626 6.3 - Term 19571 - 19614 2.5 14 9 Tu 1 . - CDS 19619 - 20680 989 ## COG1609 Transcriptional regulators - Prom 20700 - 20759 9.2 15 10 Op 1 . + CDS 20856 - 21242 303 ## EF2237 putative lipoprotein 16 10 Op 2 . + CDS 21223 - 23022 1799 ## COG4289 Uncharacterized protein conserved in bacteria 17 10 Op 3 . + CDS 23038 - 24180 1257 ## EF2235 glucuronyl hydrolase, putative 18 10 Op 4 35/0.000 + CDS 24230 - 25507 1679 ## COG1653 ABC-type sugar transport system, periplasmic component + Term 25549 - 25598 -0.0 + Prom 25517 - 25576 7.1 19 10 Op 5 38/0.000 + CDS 25658 - 26560 595 ## COG1175 ABC-type sugar transport systems, permease components 20 10 Op 6 . + CDS 26572 - 27450 904 ## COG0395 ABC-type sugar transport system, permease component 21 10 Op 7 . + CDS 27463 - 28134 573 ## EF2231 hypothetical protein 22 10 Op 8 . + CDS 28170 - 28238 58 ## 23 10 Op 9 . + CDS 28235 - 29203 825 ## EF2230 hypothetical protein 24 10 Op 10 . + CDS 29214 - 32993 3660 ## EF2229 hypothetical protein + Term 33003 - 33069 12.7 + Prom 33067 - 33126 8.2 25 11 Tu 1 . + CDS 33155 - 34159 1448 ## COG0180 Tryptophanyl-tRNA synthetase + Term 34169 - 34221 13.3 - Term 34157 - 34209 9.5 26 12 Op 1 35/0.000 - CDS 34213 - 35946 207 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 35983 - 36042 4.0 27 12 Op 2 . - CDS 36044 - 37771 194 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 - Prom 37811 - 37870 4.2 + Prom 37691 - 37750 3.0 28 13 Tu 1 . + CDS 37886 - 38653 810 ## EF2225 MerR family transcriptional regulator - Term 38660 - 38707 -0.0 29 14 Tu 1 . - CDS 38717 - 38875 152 ## - Prom 38986 - 39045 8.0 + Prom 38891 - 38950 6.9 30 15 Op 1 7/0.111 + CDS 39179 - 40117 988 ## COG4209 ABC-type polysaccharide transport system, permease component 31 15 Op 2 14/0.000 + CDS 40129 - 41052 944 ## COG0395 ABC-type sugar transport system, permease component 32 15 Op 3 2/0.111 + CDS 41076 - 42542 1246 ## PROTEIN SUPPORTED gi|15900035|ref|NP_344639.1| ABC transporter, substrate-binding protein + Term 42564 - 42596 1.5 33 16 Op 1 5/0.111 + CDS 42613 - 43248 553 ## COG5578 Predicted integral membrane protein 34 16 Op 2 7/0.111 + CDS 43220 - 44932 1817 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 35 16 Op 3 . + CDS 44944 - 46425 1596 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain + Term 46429 - 46471 7.3 - Term 46411 - 46465 15.1 36 17 Tu 1 . - CDS 46466 - 48607 2051 ## COG3537 Putative alpha-1,2-mannosidase - Prom 48644 - 48703 12.1 + Prom 48671 - 48730 10.3 37 18 Tu 1 . + CDS 48780 - 49880 637 ## EF2216 hypothetical protein + Term 49884 - 49934 12.0 - Term 49873 - 49919 5.0 38 19 Op 1 1/0.222 - CDS 49924 - 50406 675 ## COG3832 Uncharacterized conserved protein 39 19 Op 2 . - CDS 50428 - 50808 547 ## COG0346 Lactoylglutathione lyase and related lyases - Prom 50906 - 50965 10.5 + Prom 50921 - 50980 11.0 40 20 Op 1 . + CDS 51020 - 52486 1859 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Term 52504 - 52550 11.0 + Prom 52532 - 52591 5.8 41 20 Op 2 . + CDS 52614 - 53618 1325 ## EF2212 hypothetical protein + Term 53620 - 53666 12.1 - Term 53608 - 53654 11.3 42 21 Tu 1 . - CDS 53656 - 54009 413 ## COG5294 Uncharacterized protein conserved in bacteria - Prom 54214 - 54273 5.4 43 22 Op 1 . + CDS 54208 - 54912 799 ## COG2738 Predicted Zn-dependent protease + Prom 54914 - 54973 3.9 44 22 Op 2 . + CDS 54996 - 55334 556 ## EF2209 hypothetical protein + Term 55339 - 55366 0.1 - Term 55327 - 55354 0.1 45 23 Op 1 . - CDS 55361 - 56206 679 ## COG0384 Predicted epimerase, PhzC/PhzF homolog 46 23 Op 2 . - CDS 56263 - 57114 692 ## COG2508 Regulator of polyketide synthase expression - Prom 57203 - 57262 5.9 + Prom 57050 - 57109 3.5 47 24 Tu 1 . + CDS 57192 - 57713 590 ## COG0590 Cytosine/adenosine deaminases - Term 57789 - 57821 2.3 48 25 Op 1 . - CDS 57907 - 59043 765 ## COG0582 Integrase - Term 59074 - 59108 -0.9 49 25 Op 2 . - CDS 59111 - 59311 214 ## SP70585_0029 phage protein 50 25 Op 3 . - CDS 59327 - 60211 608 ## jk0640 hypothetical protein 51 25 Op 4 . - CDS 60301 - 60774 453 ## EF1276 hypothetical protein 52 25 Op 5 . - CDS 60791 - 61315 403 ## COG1396 Predicted transcriptional regulators - Prom 61335 - 61394 6.1 + Prom 61199 - 61258 7.4 53 26 Op 1 . + CDS 61454 - 61717 389 ## COG1396 Predicted transcriptional regulators 54 26 Op 2 . + CDS 61756 - 62007 214 ## gi|256961383|ref|ZP_05565554.1| predicted protein 55 26 Op 3 . + CDS 62027 - 62782 664 ## COG3561 Phage anti-repressor protein 56 26 Op 4 . + CDS 62784 - 63080 467 ## gi|256961385|ref|ZP_05565556.1| predicted protein 57 26 Op 5 . + CDS 63094 - 63327 286 ## gi|256961386|ref|ZP_05565557.1| predicted protein - Term 63225 - 63275 9.5 58 27 Tu 1 . - CDS 63314 - 63805 395 ## gi|256961387|ref|ZP_05565558.1| predicted protein - Prom 63835 - 63894 7.0 + Prom 63758 - 63817 6.1 59 28 Op 1 . + CDS 63866 - 63976 215 ## 60 28 Op 2 . + CDS 63987 - 64172 302 ## gi|256961388|ref|ZP_05565559.1| predicted protein 61 28 Op 3 . + CDS 64184 - 64357 174 ## gi|256961389|ref|ZP_05565560.1| predicted protein 62 28 Op 4 . + CDS 64354 - 64464 161 ## 63 28 Op 5 . + CDS 64465 - 64620 205 ## gi|256961390|ref|ZP_05565561.1| predicted protein 64 28 Op 6 . + CDS 64677 - 64922 365 ## gi|256961391|ref|ZP_05565562.1| predicted protein 65 28 Op 7 . + CDS 64915 - 65592 762 ## LM5578_2513 hypothetical protein 66 28 Op 8 . + CDS 65535 - 66515 745 ## JDM1_0973 hypothetical protein + Prom 66529 - 66588 1.9 67 29 Op 1 . + CDS 66614 - 67192 415 ## JDM1_0977 hypothetical protein 68 29 Op 2 . + CDS 67211 - 68143 551 ## CLJ_B1878 putative phage replisome organizer 69 29 Op 3 . + CDS 68143 - 68391 306 ## EF2128 hypothetical protein + Prom 68412 - 68471 4.1 70 30 Tu 1 . + CDS 68610 - 68699 89 ## + Term 68836 - 68874 0.4 Predicted protein(s) >gi|284795513|gb|ADDQ01000036.1| GENE 1 400 - 981 861 193 aa, chain + ## HITS:1 COG:SPy1136 KEGG:ns NR:ns ## COG: SPy1136 COG0503 # Protein_GI_number: 15675113 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Streptococcus pyogenes M1 GAS # 1 193 1 193 193 242 68.0 3e-64 MKELVERIKNDGRVLGEGVLKVDSFITHQVDPELMEAMGNRFAEVFAEAGITKVITIEAS GIAPALYAAQKLGVPMIFARKAKSLTMDEELLTASVYSFTKQVTSQISISRKFLSDADKV LIIDDFLANGQAAKGLVELCQQAGAKVEGIGIVIEKSFQDGRQLLEDMGLNVVSLARIAS LSEGTVTFLEEDA >gi|284795513|gb|ADDQ01000036.1| GENE 2 984 - 2303 432 439 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 18 438 15 428 447 171 27 1e-41 METKQLNTPQQTETPNGKAAVLGLQHLLAMYAGAVAVPLLIGTGLNFDSQQMTYLISIDI FMCGVATLLQLTVNKFFGIGLPVVLGCAIQAVAPLIMIGTNKGVGAIYGSIIASGIFVVL IAGFFSKIKRLFPPLVTGTVITVIGLTLIPVAVEKMGGGLATDKSFGDPKNLLLAFVTIA LIIVVQVWGRGFIKSIAVLIGLVGGTILAAFLGLVDLSPVGQATWFHFPQPFYFGKPTFD LSSIVLMIIISIVSMVESTGVYFALGDITGKKIGEDDLRRGYHAEGLAVILGGIFNTFPY TGFSQNVGLVQLSGIKTRRPIYFSAFFLIILGLLPKIGAMAQIIPEPVLGGGMLVMFGMV AVQGMRMLSKVDYSNDKNLLIIAISIGFGLGFNIMPTLFNKVPETVSMFTGNGIVMSSIT AIILNLLFNGLKETSESNE >gi|284795513|gb|ADDQ01000036.1| GENE 3 2500 - 2604 76 34 aa, chain + ## HITS:0 COG:no KEGG:no NR:no METLLALEVEPFSLYHVKRALLKARLRRETAEGF >gi|284795513|gb|ADDQ01000036.1| GENE 4 2631 - 3746 1285 371 aa, chain + ## HITS:1 COG:lin1886 KEGG:ns NR:ns ## COG: lin1886 COG0026 # Protein_GI_number: 16800952 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) # Organism: Listeria innocua # 20 370 19 373 374 357 48.0 2e-98 MNLDKPLLPGQVIGIIGGGHLAKMMALSAREMGFRVGVLDPQIDCPAAQVADWQLLGAYN DPEALEKLAKRAQVITYEFEHADVDALTAIQHLANIPQGTDILAITQDRLMEKSFLEDNN IVIAPYATIVSPTDIQEAIDGIGYPCILKNTRGEGRYVLHSTSDLAPSMNLLREGTCVLE AWIPYEKELSVLISGNGRGEFATFPVVETIKKERKLHETIAPARIDDEVSGELQRIAKVI AKAVGLVGTLSIEMFYTETGGIYVNKILPRPEDAGNFSIDACSFSQYDTHIRGLCNWPMP TIQLLSEAVTVNVLGNEAYETMDIINEHPDWHFHYYGHSEAKAQRAMGHITILTKEIDET LEEIKETKIWS >gi|284795513|gb|ADDQ01000036.1| GENE 5 3789 - 5084 1728 431 aa, chain + ## HITS:1 COG:SPy0036 KEGG:ns NR:ns ## COG: SPy0036 COG0015 # Protein_GI_number: 15674278 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Streptococcus pyogenes M1 GAS # 1 430 1 430 430 715 81.0 0 MIDRYTRPEMGAIWTDENRYKAWLEVEILADEAWAELGEIPKEDVQKIRENASFDVARIL EIEAETRHDVVAFTRAVSETLGEERKWVHYGLTSTDVVDTAYGYLLKQANDILRKDLQTF TEIVGAKAKEYKHTVMMGRTHGVHAEPTTFGLKLALWYSEMKRNIERFEHAAKGVEAGKI SGAVGTFANISPFVEEYVCEHLGIRAQEISTQVLPRDLHAEYVSAMALIATSIEKFATEI RGLQKSETREVEEFFAKGQKGSSAMPHKRNPIGSENMTGLARVIRGHVITAFENVSLWHE RDISHSSAERIIIPDTTILLNYMLNRFGNIVKNLTVFPENMKRNMDATYGLIYSQRVLLK LIDHGMTREEAYDLVQPKTAYAWDHQTAFRPLLDADEKITSVLSKEELDDAFDYHYHLKN VDTIFERVGLG >gi|284795513|gb|ADDQ01000036.1| GENE 6 5470 - 6531 785 353 aa, chain + ## HITS:1 COG:no KEGG:EF2253 NR:ns ## KEGG: EF2253 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 25 321 12 310 349 218 39.0 2e-55 MNLSQVPNKTTGNGIKVFSYLCFIISYYLIFLHFEVALAQQPESKPLAGFTVESMIPDNQ LDKNQTYFYLGVQPSSQQIVQVKIRSLQKESVTVALSIHDAVNGTDGQIDYTQTSPKLDS SLTNSITQIVHLQNKEATVTVKNFEEKIVNYEIRTPKEPFLGVKLGALRFVKQLEDESLT TNQFTSTYAYTISIMLTEDKQPFDEGAELKLKKVDTTISGGLPVVQATFQNRQPKVMKGA TITNWLTKKGQPKELLKKVQTDVTVAPNSLLAMELPLNEVALSPGTYTFHSQASAGNQEW QWRKDFTLTQTQIKQWSASTASAKRQPLLLIGLSALCLVTISVYFYFRKSRTK >gi|284795513|gb|ADDQ01000036.1| GENE 7 6562 - 11208 3155 1548 aa, chain + ## HITS:1 COG:no KEGG:EF2250 NR:ns ## KEGG: EF2250 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1378 1546 475 645 647 115 37.0 2e-23 MNKKMISLICVIVILLGTMILPINGLAEGSKPTTVTSEMQQIVEESLPKLSEPPKKTTET TDSSSEKTQATEATKKVETVSFTWTQQEPERQVSAGSDFYVKITSNVTWAEIQLPQEIQY NPPKNQQLKEHSSYNQEQHILVLRDLAQLGESYLLLTTTKAGTFSLSVKDKNQKELANYL EVTVAKEPIPEPQKPQEHSEQKQTKENKKSNPDDKSKNIDAKANGITVGLTAPATYRTYT DSTTGTAPDYLTISMPVSISQAGLIGTSIELPYGFYPSKSDPVFKNFDNTAPIFSLVTPS TPSANSIVASYVNDTTNKKLIIRLKQTKTTLETINLRFKFNNVYNAKIPSGQIVWNNLQA KVFDNTGTQIASSAANKTVKADVGSLAAYISSSYAVPSNNNYFDGDIVLAHSYRFYYLAR ANLDPSYDHQVYVEIPTGATLKGTLANRLLKTGVTNAQDPSVPVGFTRYYQKLVTLSPNV LENPATLVDLVYLDTRVTLNKTYAEGSAFSINFGMKVKFMNGKINTLTTTKSYIKRSRPD FQLSGDGIHSTIVGSTDTVNNLDNLATAGYFYAFGYSSFNRSSTIKNTGAKAIEGVTYKL QELTAGSAKGNFANFYIFCFTDGVNAPAYYRPWFQIKNAVTGTSRSVWSSTPAKASSFSP ALPTLATNEYIATINIIPMGTDGKTANSLPPGNGMGFRYQIKSWPNGKWPDGTALSKKSN PITFGATMQYQDATGTPTEFKLSDKKAYYNKGVSLNVSANLTSANSQNKLPGDTINYEII GKNNSYYTNTSSGDWENPIITIKVPKQLRLKATTKKDFIDESNQVTYPASVTVETLPIND TTYNYYRFKTSSTAYKSKVARESSIFRIPLEFVVDSSTASGSYQIPYVAYSSPKTTDFFN RVPTQLDATEAKKIGLDNTNENSYVMNSSATSNTGFSVVDASKLDSATNARGSATQSWSS SNIFAVESKGTPQMQTVIKNSGNTNFTSVRLYNILPSASDGRGSTGSIGFTNLTNNSGTA KIYYTTKPVSQLPSYTNNDLQAWNATKLTSLGFTTTKPANSALITAIYVDFGATTIKPGE TLDAIMNFLVPEAENQKAINQFQYSAKEAKAGATLTAVSNKITFSTEFAQVAYEQNLPNV IVPGSGVKGLPSPQTIQLDVNDAGKIVIPTTKPTLSGYTFVEWQDVATATKKYQPGATIS FTSTSTTTKITLKAIWKPISVNVTFNANGGSGGTAAKAYTFGTVINLSTVAKPTRTGYTF QGWAATANAATPNITTNPLVNYASAKTYYAVWKGNAYTVKFDANGGTGTMPNASFIYGTG KPLPANTFTKESNTFLGWSKTRTSAVVYTDKQIISTLTATNNGTVTLYAKWSGQRPVLMG TPSTFDFGKQTISPMAKNYGLNSANYVGSPELQQAGFKLRLEDNRPISTGWKLNVSLSEF KDSTGTSLPQGEGITLNFANTQLQKVQYANTAVESVTNSFTNGPTLGSQAFRSGATAQSI ITATGTQGSGTWQLYFPFEEIKLTVPANVGEISKVYQSTVTWSLDDVV >gi|284795513|gb|ADDQ01000036.1| GENE 8 11397 - 11768 414 123 aa, chain + ## HITS:1 COG:SA0890 KEGG:ns NR:ns ## COG: SA0890 COG2259 # Protein_GI_number: 15926624 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 7 117 4 115 118 72 40.0 3e-13 MDKQQRGIQVIRIWLGVTMLIHGVMKVTSLEDTLAFFASIGLPSLFVYGVAAIELIGGLF MIIGFLIPLVSVGFIAVLVGAIFSFGLASGFSGYEYELFLAITSLAILISHADKKYLTLK LYF >gi|284795513|gb|ADDQ01000036.1| GENE 9 12039 - 14645 1614 868 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 1 859 1 808 815 626 43 1e-178 MNIEKMTTTLQEAIAEAQKVAVTRQHQEIDIAHLWKIFLQPNHFGRNFYTDAGLDVDAFE REVDNALDEYPSVAGGNVQYGQNLSQNLFHLLQEADSLREEFQDEFLSTEIVLLALMKLK NYRLTKYLMQQGITEKELRKNIEEMRGGDRVTSQNQEEQYKALEKYGVDLVQQVKAGKQD PIIGRDEEIRDVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVRKDVPENLKDKTIF SLDMGALIAGAKFRGEFEERLKAVLKEVKKSDGKIILFIDEIHNIVGAGKTEGSMDAGNL LKPMLARGELHLIGATTLDEYRQYMEKDKALERRFQKVLVKEPTVEDTISILRGLKERFE IHHGVNIHDNALVAAATLSDRYITDRFLPDKAIDLVDEASATIRVEMNSMPTELDQVTRR LMQLEIEEAALKKESDDASKKRLANLQEELADLREEANSMKMQWETEKEEVNAVSNKRAE IDKAKHELEDAENNYDLERAAVLRHGTIPQLEHELKKLEEKNAKDNVKMVQESVTENEIA QVVGRLTGIPVTKLVEGEREKLMKLNETLHKRVIGQDEAVDAVSDAVIRSRAGLQDPNRP LGSFLFLGPTGVGKTELAKALAEDLFDSEDHMVRIDMSEYMEKHAVSRLVGAPPGYVGYE EGGQLTEAVRRNPYTIVLLDEIEKAHPDVFNILLQVLDDGRLTDSKGRVVDFKNTVLIMT SNIGSQLLLEGVTPEGTIPEEVENQVMNILKGHFKPEFLNRIDDTILFTPLSLDNVKGII GKMTAQLAHRLEQQEIVLEITDEAKTWIAENGYEPAYGARPLKRFITREVETPLAKEIVS GRVMPKTKVTISLLDNQLVFENEPIEEV >gi|284795513|gb|ADDQ01000036.1| GENE 10 14680 - 15159 535 159 aa, chain - ## HITS:1 COG:MA3568 KEGG:ns NR:ns ## COG: MA3568 COG3613 # Protein_GI_number: 20092374 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside 2-deoxyribosyltransferase # Organism: Methanosarcina acetivorans str.C2A # 4 106 7 108 140 80 47.0 1e-15 MTKIYFAGPLFSQADLRYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALAD TENVLASDLLVALLDGPTIDAGVASEIGVAYAKGIPVVALYTDSRQQGADNHQKLDALNE VAENQFHYLNLYTVGLIKLNGRVVSSEEDLLEEIKQRLS >gi|284795513|gb|ADDQ01000036.1| GENE 11 15183 - 16403 1154 406 aa, chain - ## HITS:1 COG:BH1812 KEGG:ns NR:ns ## COG: BH1812 COG4552 # Protein_GI_number: 15614375 # Func_class: R General function prediction only # Function: Predicted acetyltransferase involved in intracellular survival and related acetyltransferases # Organism: Bacillus halodurans # 15 406 7 386 386 184 32.0 3e-46 MDEQEFRKQLTLKPVEEEHIDQFNELLSYVFQVTEADIEESGFENKRAFIKSKQPILELS KVFGWFHENQLISQIAIYPCEVNIHGALYKMGGVTGVGTYPEYANHGLMKDLIQTALEEM RQDKQWISYLFPYNIPYYRRKGWEIMSDKLSFKIRDTQLPKTVPVPGMIERLAVDHPDVF DVYARFARQNHGALIRSAFNWEEYWRFENEEERTAAVYYGANQEPLGVLFYWVADEVFHI KEMFYLNQEARNGLWNFITAHFSMVYWVKGDIYKNEPLAFLLEDSQIKESIEPYYMARIV DVKAFLENFPFESTAKPFHFVVKDPVAEWNNGIFGLIWDENDQVTITDEPLGTAVHLDIQ TLTCLVMNYRRPSYLHRIERIDTDKETLNSLERIFPDQEAYFSDYF >gi|284795513|gb|ADDQ01000036.1| GENE 12 16650 - 18488 2070 612 aa, chain + ## HITS:1 COG:SPy1053 KEGG:ns NR:ns ## COG: SPy1053 COG0481 # Protein_GI_number: 15675045 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane GTPase LepA # Organism: Streptococcus pyogenes M1 GAS # 1 610 1 610 610 1018 82.0 0 MNNKEMKARQEKIRNFSIIAHIDHGKSTLADRILEKTNTVSSREMQDQLLDSMDLERERG ITIKLNAIELNYTAKDGETYTFHLIDTPGHVDFTYEVSRSLAACEGAVLVVDAAQGIEAQ TLANVYLALDNDLEILPVINKIDLPAADPERVRTEIEDVIGIDASEAVLASAKAGIGIED ILEQVVEYVPAPSGDIEAPLKALIFDSIYDSYRGVVLNIRVIDGVVRPGDKIQMMSNGKT FDVTEVGVFSPKPIARDYLMVGDVGYITASIKTVQDTRVGDTVTLADNPAAEALPGYRKM NPMVYCGLYPIDTSRYNDLREALEKLQLNDAALQFEPETSQALGFGFRCGFLGLLHMDVV QERLEREFNLELITTAPSVIYHVNKTDGTTVVVDNPAEFPEPVTIESVEEPYVKAQIMVP NDYVGAVMELSQRKRGEFITMDYLDDYRVNVVYEIPLSEIVFDFFDKLKSSTKGYASLDY EMAGYRTSRLVKMDILLNAEKVDALSFIVHRDFAFERGKAIVEKLKKLIPRQQFEVPVQA AIGQKIVARSDIKALRKNVLAKCYGGDVSRKRKLLEKQKEGKKRMKQIGSVEVPQEAFMA VLKMDEDDQKKS >gi|284795513|gb|ADDQ01000036.1| GENE 13 18745 - 19578 813 277 aa, chain + ## HITS:1 COG:no KEGG:EF2239 NR:ns ## KEGG: EF2239 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 277 1 277 277 565 100.0 1e-160 MTCISLSILNQEQEVRKAKIDDSDSLKELTITGKDFVCLAARDCQLQDGDVIQVCLDTPN TYLMVKLDATLDSSLIYVPEQKWTFPIIKNENAIEARAAYRFETKKPYISVRIATKEEIK SYRNWALNPHDLQHFTGAYPHASANVETRNDATFFACNAIDGTFANLYHGPYPYQSWGIN QQLDAALKIEFGREVLLDKVILTLRADFPHDNYWQQVTLKFSDGTHEVFKTVKTEQRQSF TFAKRAAEWVILTELIQADEPSPFPALTQIELFGQNK >gi|284795513|gb|ADDQ01000036.1| GENE 14 19619 - 20680 989 353 aa, chain - ## HITS:1 COG:SP1854 KEGG:ns NR:ns ## COG: SP1854 COG1609 # Protein_GI_number: 15901682 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 1 347 1 331 335 195 35.0 1e-49 MATITDIAKVANVSISTVSRVLNYDPNLSVTEETKRKIFEAAETLNYTKYKTKNKNKQQE QLTPNLSAQTAPQEPSIAVVQWRSDDEELTDIYYMSIRLGAEKRAEELGYNILKVSQLEQ HNLQGIDGILAIGKFTQKTLQELQQLHPNLCVIGSNFPLEEFDSVNTDFYQATEIALTHL LELGHEKIAFIGAEESENMYGFRRYKTPTTNAYLDIMQHYHLFNEDYFILKENGMLDVKT GEQLTEEALEKWGNDLPTAILAYNDAFAIGVIHTLAAHGIKVPEEISVMGINDISISQYV SPPLSSVHAFTEEMGETGINLLHKRIQMPSIPRRVLLNTELVVRQSTTSPRQK >gi|284795513|gb|ADDQ01000036.1| GENE 15 20856 - 21242 303 128 aa, chain + ## HITS:1 COG:no KEGG:EF2237 NR:ns ## KEGG: EF2237 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 128 1 128 128 204 98.0 6e-52 MKIFSLFLLILLALTGCKSGEKEFDEESLQNLKETAQSYSETELQNGDVRLNEYISLKGE IVESDSRSSLIKKGDRFILKSGSSKYQVFNEQKKKLKIGDEVTVYGEYYGFLKGTLIESE ENHDSATN >gi|284795513|gb|ADDQ01000036.1| GENE 16 21223 - 23022 1799 599 aa, chain + ## HITS:1 COG:SMb20536 KEGG:ns NR:ns ## COG: SMb20536 COG4289 # Protein_GI_number: 16264263 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Sinorhizobium meliloti # 57 567 61 572 617 385 37.0 1e-106 MIQPRIRQNTFETYEEVAEGFEDLLAPLELFFDREYQGHLDLGTHGTVYSKGTRDAEAFL RPLWGLGPYVTQNESEYLNDFLTGIIEGTDPESSSYWGKTKDYDQLIVEMAALSTFLLLN KEKTWDQLTKEQQNNLHSWLIQANENIIPPNNWHFFRVLLNLAMKHCEMPYSNEQIAVDL AVIDRFYVGNGWYYDGVETQVDYYVSFAIHYYSLLYCRFAPEDTARVAIMKERATLFAQE FKYWFTQPGEAIPFGRSLTYRFAQVSFFSALVFADVEALPWGEIKGLISRHLHQWMNKDI FTTDGLLSVGYDYQNMVFAEGYNGPGSPYWAFKTFILLAVPKDHPYWQAETQPISFPEKH LPSPESRNYYQVNDAGTHGLMFPAGQFINYQAHAHDKYSKFVYSSHFGFSTIKSDYWYYE GAYDNCLALAEDDHYFRTKGLDDQYEILDDRIIHQWHPWSDVAIKTTIVPLEGQHLRIHE IETQRALVAYEGGFSIPLFDEKVTCVSDQMAEVKNKKGVSKVENINGFSEAAIIRTEPNT NLLYPLTELPYLKANLSKGKHLLISLVTGVLPNEQIEPVKVRLKENQLLIEEKVVILGN >gi|284795513|gb|ADDQ01000036.1| GENE 17 23038 - 24180 1257 380 aa, chain + ## HITS:1 COG:no KEGG:EF2235 NR:ns ## KEGG: EF2235 # Name: not_defined # Def: glucuronyl hydrolase, putative # Organism: E.faecalis # Pathway: not_defined # 1 380 1 380 380 753 99.0 0 MTENGQIEWLPKQISFALNKVRGNLETFKELVPPAASLNQIYYPEENIDWTASFWPGMLF LAKELTNSTEFDEVITTQMASFQHRLDEQIELETHDIGFLYILTAIADYQVNGHEASKEM ALQAADLLMKRYSPKAKIIQAWGNLDDPEQRGRMIIDCLMNLPLLYFAAKMTGKQEYYEA AYNHAKQTQKYIVRENHTTFHTYYFDTETGEALYGKTQQGYSDDSCWARGQAWGIYGFTL SYLYTGDSSFLETAKNVADYFIQELPEDKICYWDLIFNEGSEEERDSSSAAIAACGLLEL SRQLPLNDEKHGYYEKVALELLQALAEKYTTVLRPESNGLLLHGVYDKKTNTGVDECMIW GDYFYLEALTRLAKSWYSFW >gi|284795513|gb|ADDQ01000036.1| GENE 18 24230 - 25507 1679 425 aa, chain + ## HITS:1 COG:BH1864 KEGG:ns NR:ns ## COG: BH1864 COG1653 # Protein_GI_number: 15614427 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus halodurans # 13 350 12 364 461 106 25.0 1e-22 MKFWKKGLTAAALLAVAAVTLTACGGSSEKKATEKSEDGKTKLTVTTWNYDTTPEFEKLF RAFEAENPDITIEPVDIASDDYDTKVTTMLSSGDTTDILTMKNLLSYSNYALRNQLVDLT DHVKDLDIAPAKASYEMYEIDGKTYAQPYRTDFWVLYYNKKMFDEAGIAYPDNLTWDEYE ALAKKLSKPEEQVYGAYQHTWRSTVQAIAAAQNNANLIEPKYNYMETYYDRALRMQKDQS QMDFGTAKSTKVTYQSQFENSKAAMMYMGSWYMGTLLTNIDDGKTNVEWGIAEIPQQEKG KATTFGSPTSFAINKNSKKQKAAQKFLDFASGKEGAKLLAEVGVVPSYKTDEIDKIYFAR KGMPSDEVSQKAFNPDTINLEFPSDKNGAAIDKVLQEEHDLIMVGDEKPKDGIANMEKRV KAEID >gi|284795513|gb|ADDQ01000036.1| GENE 19 25658 - 26560 595 300 aa, chain + ## HITS:1 COG:lin0760 KEGG:ns NR:ns ## COG: lin0760 COG1175 # Protein_GI_number: 16799834 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Listeria innocua # 21 295 17 291 296 220 45.0 3e-57 MEITSKTKTANKLRRKNTWTALSFIAPNFIGFFLFTLIPVICSLILAFMSWDSFSTPEFV GMKNFTKMIHDDTFWISLKQTFIYTIGVVPLTLICSLGLAILLNRKIRGMKFFRTAFFFP YVTSLVAIAVVWNMLFHPTMGPINQFLKLFIENPPGWTSSSTWALPAIIIVSVWRFMGYY MILYLAGLQSVPRELYEAASMDGAGKWNQFLNVTLPSLRPTTFFVTIMLVINCFKVFDLV QVMTGGGPGRATNVLVYEIYNEAFVKFNFGYASAIAMVLFIIVLAITVAQFKWNQHQEKV >gi|284795513|gb|ADDQ01000036.1| GENE 20 26572 - 27450 904 292 aa, chain + ## HITS:1 COG:lin0219 KEGG:ns NR:ns ## COG: lin0219 COG0395 # Protein_GI_number: 16799296 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Listeria innocua # 27 291 17 281 282 211 42.0 9e-55 MEATFSKKENTRKAKTKKAEKVTPGGILVIILLTLLALITLVPFIWMVSASFKTNNEVFT IPIQWIPKSWHPENYSVIWERIPLLTFFKNTLFLSIVITIIQLFTSSFAAYGFSKMNFRG RDTLFITYIATIAIPWQSYMIPQFIMMRQLGLTDTLWSLVLLQAFNAFGVFLLKQYYSSI PDSLCESARIDGLSEWGIYWKIILPLTKPALASLTIITFVNTWNDYMGPFIYLSSTENKT IQLGLKMFVGLFDAEYALIMAASVVSILPVGIVFLAMQKYFVEGIATSGMKN >gi|284795513|gb|ADDQ01000036.1| GENE 21 27463 - 28134 573 223 aa, chain + ## HITS:1 COG:no KEGG:EF2231 NR:ns ## KEGG: EF2231 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 223 1 223 223 367 99.0 1e-100 MFTKQTFDNNIYMKIFRWLYILFIGNLGLLLVNIPFFIAVISLDIDPRNLPLFVVTLLPM GAGMIALLGLIDTFKEEKELDPFKTFFQKFRQFGLRGFLISLLGLGSSIISVTDIFFFAK TTIGKWFIPLMVLLLIFGLAIMLNAWYFQVRNPQASFKDVFRISIYYGLRKWYVSCLNVF LLFSMFAMMFLKPQFGFVVTPVLFLGIIYLNTGKLHEKQKKNK >gi|284795513|gb|ADDQ01000036.1| GENE 22 28170 - 28238 58 22 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNEGGIAYFVLALFIKVEGANE >gi|284795513|gb|ADDQ01000036.1| GENE 23 28235 - 29203 825 322 aa, chain + ## HITS:1 COG:no KEGG:EF2230 NR:ns ## KEGG: EF2230 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 322 1 322 322 520 99.0 1e-146 MKKKIIILSSFLIGAIFVLVIFTTSQQSMINNEAIQVEELIVYGDKNMNRVAKQFSDQNN LTSFGKNFWRKTYNGKSPTQELLKVATEDLVQHKMIKQLATELEIAHSQTFGQEKKEWQD QKSSLTLWQFLDAKDQQLQDQIKEKLMEKEKPTQKELRQAFEQLDDKYKKTDYFVEAIEI PNFSGKQAELEKIAEAISPNLSYEETLLEWQNKLPNLVIESYQLKSAEIQKEDIYSLSVG EILSEKAVGTVVKGYHENQYFYIFNKEGGQLLQFEEAPQFGKNAYINTCYKEKLATYQQA TKVDLLEKDREKFFQNYQNKNS >gi|284795513|gb|ADDQ01000036.1| GENE 24 29214 - 32993 3660 1259 aa, chain + ## HITS:1 COG:no KEGG:EF2229 NR:ns ## KEGG: EF2229 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 1259 1 1259 1259 2346 99.0 0 MRKKAYFKSVTIFLSILLVFSQLQLFSLPAYGETVSDQPLLFRSVGVAQSGTTYYVDGEG GNNANDGQSPASAWRDFEKVNQTEFQPGDHLLLNAQSTWNNQLLHPKGNGTAAQKIVIDF YDTNDKGETIFETTRRPIINGGGTYSTGTFKRAISGAVQLVNQEYWDISNLEVTNTPELD NLEGYKKPGDAQRAGILVLGYEQNRTFNSVTIRNNYVHDVQTEYYLNLSGNTATKRLKAV GGIIVLGSWFDENGNVVTAANDHRTTTGFNDILIENNVIQRVGLEGIRTKADSDTSRGNT FYKTFSNITIRNNYLEDIAGDGIVLSEAKSGGVVEGNVAVRMCNADYGTQNYAGVWAMSV DDGLFQYNEVYGIKYGFNDAEAYDVDMQSNNVIYQYNYSHHNTGGFLLLMSDQKNSVIRY NISANDGGGNRGTGKDNPGGAGGYNYKEQSIFHYWVKNDGAAMPTIHNNTIYVGDGISTS LFGEGNSSDNSGTVANFYNNILYKEGTGQLKFLSNYPTNGTQPIERKMVDNPEKYFKNNV IWPKEIATEKSGATVEKLVSSGNIFEKPQLEITDNPEKVKELAEQEFTTLKPTKDNVVEF TSKERLRQRAQMFQLKETSPAIGKGLSEVNSAAEDFFGNSLKNKVLDIGAQQASTIEKSI RYQNQVLEISSATGVYPNLPEQVELTYEEVVNEEVVATGKKEFKLQWEAIPQEKINTAGT VEVAATVIGLPIDAVKVTAKVSFEGELGEGKDTVKLKTAQTAYVQKSDGNRAYSAIAGGT AAISSGDAYKYPYGVNYTGNYALKLKNASSAGYNRRIYVEIDTQELKNYQSLKSANLELN VMRYDAWNGAGNTNDERLKNTQFQVDVYGTDTNWMSNTITWNNGPNNLNVPNEEFIARQS FTNSSIMNNQNTISIDISNYLRKLIQSGEKIPAKLSFLLAITDSRLPGYDSDNAGFDAFS KEGAQKAYQDFLAGKLTLPTGQQLTEDSLAPKIVLSNVFEVKHESIEVTTEAGQAPNLPE KTTIFYSDGSQREVTVNWSEVPASSYQKEGTFTVVGRAAGVSLPIIANVKVTAKHIVGFK ELPTLDRLTGTSRGELNLPTEVIAKLDDGSETKLKVISWDDDVSNYSPSSPPGTYQFPAA VEEKIGIANPDERKIFQVVQTHAIPERIQFAAETATIKSGENYQIQSKVIGQAPHTETDA WSSQVTYELVTPDAGNTVSVDENGLIRTEATTAAGNYQIKVTSKVLPIVTAQFSIKVTK >gi|284795513|gb|ADDQ01000036.1| GENE 25 33155 - 34159 1448 334 aa, chain + ## HITS:1 COG:SPy2207 KEGG:ns NR:ns ## COG: SPy2207 COG0180 # Protein_GI_number: 15675940 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 4 334 6 340 340 443 67.0 1e-124 MNTILTGDRPTGKLHLGHYVGSLKKRVEMQADPTNQLFVMIADLQALTDNAKNPEKVSAN VLEVALDYLAVGLDPTKTTIFIQSQIPQLAELTMYYLNLVTTSRVRRNPTVKAEIEQKKF GEGVPTGFFIYPVSQAADITAFQANLVPVGEDQKPMLEQAQEIVHSFNQTYGEVLVRPEA VLPPKGMGRLPGIDGNGKMSKSLGNGIYLSDPAEVVQKKVMSMYTDPNHIRIEDPGQVEG NMVFTYLDVFGKEKEYIEELKEHYRHGGLGDVKIKRYLIDVLEEELAPIRRRREELAKNP EAIMEMLHKGSLAAEKVAAQTLTEVKKAMGIQYF >gi|284795513|gb|ADDQ01000036.1| GENE 26 34213 - 35946 207 577 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 338 563 2 230 245 84 28 2e-15 MIKPEHPIFYGLMICSLIGNLLIVAMTYIMAIGIDNLLEAIKRVGLKGMTLSLVEEALLG PVLLLILFSIISSITSFIQERAMASLSERVTLRIRKEVTKKFKTLPMAFFDNHQVGDIIS RSTTGLNQLSQVLLTGINQFFTSVVTILFAGIMLFYIDAKLTILVLLLIGGSTFMTTKIA NKNKVFADQSQAELGQLNNKMEEYLAGNLVTKTFNQQQNAEKTIDAVNQQHYRAFKKAQF LNFAIYPAIRFINQLAFIISAILGAMLVLSGGITIGFLQAYLQYINQISEPISTASYVIN SIQAAMASIDRIFVILDEADEQPEATHLETISSPKGAIEFKNVQFGYTPEKILMKNVDFS VQPKKTVAIVGPTGAGKTTLVNLLMRFYEINQGAITFDGIDITKLSRQNLRNLFGMVLQN TWLFEGTVADNIAYGKKDASREEIIEAAKIAQCDHFIRTLPQGYDTIISSENGALSQGQQ QLLTIARIILANPPVVILDEATSSVDTRTEAHIQKAMETVTENRTSFVIAHRLSTIENAD LILVMKNGDIIEKGTHQELLQAPTLYASLYNSQFQTT >gi|284795513|gb|ADDQ01000036.1| GENE 27 36044 - 37771 194 575 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 333 558 278 509 563 79 27 5e-14 MKLMKEFIKENKWIVLATTLTICLQIAGTLGVPKLVGKLIDVGIVSGDQQVIKTIGIQMF LVAFIGTIAAIISSYLSALVAAKFGFQVRGLFFKKFQQFSMKNVDKFGSNSLLTRMTNDV DNVQTMIVLFCQLIFPAPIISLFALVMTFSYSVSLAWVTLASIVFYLVVVYFLMKKGTPL SLKIQPKMDRITTTLREFFTGINMIRAFNNQDFEEQRTNQTFKNYAERMSKVNQIFAWIT PVAFLLMGVVYASILWFGGNLVAVGTLQIGTVTAVIEYTLLTLAYLMIAAMVLVVIPRSV ASLNRLQEVLSEEIEISDPHTEATIAYHPEKALICFDHVTFQYTETADPVLENVSFVIPK GKTTAIVGATGAGKSTLVKLLLRINEVTAGTISYSGTDIRSLSQQTIRQVISYVPQKAFL FSGTILSNLLMGNAKATTEEIRTALEISQSSEFIDSLPQGIESFVAQGGSNYSGGQKQRM CIARALIKPADVYIFDDSFSALDYKTDAALRAALHAQMADKTLLIVAQRLSTIMNADNII VLDEGRIVGQGTHADLLTTNSYYQDFAKSQGILPK >gi|284795513|gb|ADDQ01000036.1| GENE 28 37886 - 38653 810 255 aa, chain + ## HITS:1 COG:no KEGG:EF2225 NR:ns ## KEGG: EF2225 # Name: not_defined # Def: MerR family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 255 1 255 255 464 100.0 1e-129 MEKNYTIKDVSELLNIPKSTIRYWDEQGLISTTRNEENGYRTFDLEDLFKIYDIDFYRKM GIPIKDMLNLYKKTPTDLYATMEATEEQLGQEIKRLQHKYKEIKKRKLHLHALIDLETLV FSDEPIPFDKIVVVDIEDPEEMKVYMEHISTLGIYGDLSESNELTYGICLANHVNKKSLD KVIWLKESSSQYKGFILKVNTQDTRLNNIEEVKKRLAKQGFETGIVVGEHILTQLEEENQ YIEYYYGWIEILGEK >gi|284795513|gb|ADDQ01000036.1| GENE 29 38717 - 38875 152 52 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNFIRKNTRAIRLIVVYFFAVLMQAGSLLLLAISLLFFYLPLCTHNMLDFLL >gi|284795513|gb|ADDQ01000036.1| GENE 30 39179 - 40117 988 312 aa, chain + ## HITS:1 COG:L129753 KEGG:ns NR:ns ## COG: L129753 COG4209 # Protein_GI_number: 15673479 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type polysaccharide transport system, permease component # Organism: Lactococcus lactis # 7 312 4 310 310 414 72.0 1e-115 MKKKNGFFQNVWRYKALILMALPGFIWFIFFFYIPVLANVVAFKDFHISPDGFLASLRES PWVGFENFKFLFASKDAWLITRNTILYNVVFLAFNLFFAIAFAIIMSELRNRRLVKVYHT MSLLPYFLSWMVINYFVYAFLSPDKGILNQWITGNGGTMINWYADPRWWPVIFVFLNVWK SLGYNSIIYYASVMGIDPTYYEAAMVDGANKWQQIKNVTIPQILPMMSVLLILNIGGIFR ADFGLFYIVPRNSGALYNVTSVLDTYIYNGLTATGDVGMTAAAALYQSVVGACLLLIANL VVRRIEPDSALF >gi|284795513|gb|ADDQ01000036.1| GENE 31 40129 - 41052 944 307 aa, chain + ## HITS:1 COG:L128777 KEGG:ns NR:ns ## COG: L128777 COG0395 # Protein_GI_number: 15673478 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Lactococcus lactis # 1 307 1 306 306 411 71.0 1e-115 MKKKKVTSVNVRSFNPTANLIFNIVIAIFAISCVVPFFFVIMISLTSEGSLAANGYRFWP KEFSLEAYRYIFQGAMSQRIIHALGVTVFITVTGTIVNATMTSLYAYVISRSNFPFKKFF TLFALITMLFSPGMVANYLVMTNLLQLKDTIWALILPLALGPFNILVMRTFFKKTVPDSI IESARIDGASEMRIFVSIVLPLAVPGIATISLFAALGYWNDWFNALLYIQKDTLVPLQYL LMKIQNNLEFLSRSTDMGAAAQEGLGVLPSESARMAIVVLSTLPIALTYPFFQKYFVGGL TIGGVKE >gi|284795513|gb|ADDQ01000036.1| GENE 32 41076 - 42542 1246 488 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900035|ref|NP_344639.1| ABC transporter, substrate-binding protein [Streptococcus pneumoniae TIGR4] # 1 488 1 491 491 484 48 1e-136 MKKWQKGLAVAGAAALAVGLSACGKSSKDAASKGDDSTPTLLMYRVGDKPDNYDQLIDNA NKIIEKKIGAKLKMEFVGWGDWDQKMSTIVASGESYDISLAQNYATNAQKGAYADLTDLA PKYAKEAYDQLPDNYIKGNTINGKLYAFPILGNSYGQQVLTFNKEYVDKYNLDISKVDGS YESATEVLKEFHKKEPNIAAFAIGQTFFATGNYDFPIGNQYPFAVKTTDTGSPKIINQYA DKDMINNLKVLHQWYKDGLIPTDAATSTTPYDLNTNTWFMRQETQGPMDYGDTILTQAAG KPLVSRPLTEPLKTTAQAQMANYVVANTSKNKEKAVELLGLLNSNPELLNGLVYGEEGKQ YEKVGDDRVKLLKDYTPTTHLSAWNTGNNLIIWPEESVTEDMVKERDKSIEEAKDSPILG FTFVNDKVKTEITNVATVMNRYAASLNTGTVDPEETLPKLMDDLKTAGWDKVQKEMQTQL DEYIQSQK >gi|284795513|gb|ADDQ01000036.1| GENE 33 42613 - 43248 553 211 aa, chain + ## HITS:1 COG:SPy1589 KEGG:ns NR:ns ## COG: SPy1589 COG5578 # Protein_GI_number: 15675476 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Streptococcus pyogenes M1 GAS # 5 202 3 200 201 118 37.0 7e-27 MESTGIQRLFYLSWTVIKLNLLFVLFSLAGGIIFGVGPALQMMTDFILEEGMNYQAITVK RAFESWKAHFKRSNCYFLLFLFTLGFVFYNIYLAVQFTGIMWLIITFILFFVSLILVIFY IYMLLYEGSYFISTIDLMKLSFISIFLNLGVFFKVLFGVISIVALTWKMKGLLLFASFAL IMMWCAYVTRKNRQFIDGKLEQNEANLQKTV >gi|284795513|gb|ADDQ01000036.1| GENE 34 43220 - 44932 1817 570 aa, chain + ## HITS:1 COG:SPy1588 KEGG:ns NR:ns ## COG: SPy1588 COG2972 # Protein_GI_number: 15675475 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Streptococcus pyogenes M1 GAS # 1 566 6 568 574 361 36.0 2e-99 MKRIFKKLFKKKYLLNRLVQKYSLLLTSIILLTVAALCVYVTYTINLSIDSQKNNAVSQI DSYVTNKNNAATNMINELAGSASKIENMRKYMELSPPEYFDYTYSQWSEDRVSTHFGNNL STLFSTFPDLEEVIIRLDEFDQVLFANRTATNGKKMDMSSIKKHGFQLMRIISDPYTGQP LGELYTVFSSQELLGNQADLLKKSGINAFIYDSAGNQIFSEKAQFTKEEEWQLDKRMHTD SDIQQVFHNRYDITEIESSGRSTILLLTSRRVLFQQLFMNYAAILGIGLLLIVILLVGLN RLFKRYSQQVQLILEATRAIGDGNLKERIDTNQVQEELNDIASAINFMVDSLDQYIHDIY TLEIKQRDAHMRALQSQINPHFLYNTLEYIRMYALSRQQEELADVVYAFSTLLRNNINQE KTTTLAEEISFCEKYVYLYQMRYPDQFAYKFEIEETIADVEIPKFIIQPLVENYFVHGID YQRQDNAIKVHAYREGEKIIVAVVDNGKGITANRLEEIRARLNQTEIDTEQSIGLRNVHE RLQRFFGESYGLTIEGKEGEGTTIRLSFVA >gi|284795513|gb|ADDQ01000036.1| GENE 35 44944 - 46425 1596 493 aa, chain + ## HITS:1 COG:SPy1587 KEGG:ns NR:ns ## COG: SPy1587 COG4753 # Protein_GI_number: 15675474 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Streptococcus pyogenes M1 GAS # 1 492 1 491 494 361 43.0 2e-99 MYRVMFVDDEYMILEGLKWIIPWQELGFEIVKTARSAQEALAFLETESIDVLLTDITMPE MSGIELIEQAKKKGHQFISLILSGYQEFDYVKKGMALQVQDYLLKPVNKQELLANIQRIR TELDQQKKSHARVRLYLENGLMRWLNDEISEGEYEELMQQFATIKPGDFTVLLVEAEMPF LETIKELFMKKGQLLFIESWMSTYHQLLLIYKGARQEAFLFIREIEAILAGQGQIFVGES VNEWETVYESYEKVKQLQAIETFYQEFLPNNQKEQMNRSAEDFTFLAFNQALMIGDMQTI QRELDAIFNQLSQQHATPEYVRYVVFLLFSDISRQYPTVLEENYEKIVEEIRASNNLNTL YALMQQVLAEVKNKPKIKKYSESVSQAVERIEQGYLEELNLKTVADELHLNPSYLGQIFK KETKRSFSQYLNQVRTKHAQKLLLYTDDTINEISEKVGFNNTNYFSKMFKKLNGITPKEF REQYQSNYAGVEE >gi|284795513|gb|ADDQ01000036.1| GENE 36 46466 - 48607 2051 713 aa, chain - ## HITS:1 COG:L135972 KEGG:ns NR:ns ## COG: L135972 COG3537 # Protein_GI_number: 15673483 # Func_class: G Carbohydrate transport and metabolism # Function: Putative alpha-1,2-mannosidase # Organism: Lactococcus lactis # 1 710 1 715 717 944 64.0 0 MNIQAIDTRHGTANQHSFSNGNCLPYTGVPFGMNFYAPQTTDQKGSWWFHPEDRTFQGYR VTHQPSPWMGDFSHLLMTPVSGSLSELSLFHAQSSYRPEESLFSPVEINLTQLRYQITSQ LIPSMYGGILTIDYQQTDNHLLLTLPGRYQVKQLDDHQVAVKVINYSGCEDPDFSFYFVL HFEQPLTKWFAPSSGEDGKILLSFGNIAQQVVHFSSSFISEKQAQLNLAREISLRSTEML QQGIADWHNYFDRLKVTHENPEHTKTFYHTLYRTFLFPQTFYELDENQQPIHYDTFSQTV RPGVLYTNNGFWDTYKTVYPLFSLIAQEKYEEMLEGFLNSYNETGFLPKWLSPDERGLMP GTLIDAVIADAAVKKIRPDLMPQFLEAMKKGATQQSERENYGRQGTLDYLKYGYVPSTYH ESVNHTLDYAYSDFCISQVAKTLNDSETATFYRQQALNYQQLFNPETGFMQAKDTEGHFR PDFLDIRWGKDYAEGSAWQSSFAVYQDFAGLIELYGSELAFEKKLIQLCNQAPNFNVEGY GFEIHEMSEMAAIDFGQLAISNQPSFHYPFLFSYIGKPEMAQPLLKQLMQTFNASPTGYP GDEDNGSMSAWYIFNSLGFYPVTPGTGEYVIGMPLVQTAEVKLSNGKQLTIQTSPNKVQQ QFIHEIQLNQEKHTAPYFTHQELLNGGTLDYQLGIVPNPQNTAERPFSLSTEK >gi|284795513|gb|ADDQ01000036.1| GENE 37 48780 - 49880 637 366 aa, chain + ## HITS:1 COG:no KEGG:EF2216 NR:ns ## KEGG: EF2216 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 366 1 370 370 556 97.0 1e-157 MIVIYFFSTKSQQFFAYVWAIFPVIAFFLVSFYTLDFLFSPSYLIMVPVFTIMFKINYKK DYSFVALLKMSIRQFVISFLAFIASSSFSWSIILNSSVTFLIVYLFYSSATPMRYHSYLM MFTFCQLIQVKGNTFLMQSQVVAFLIGLFLLALTLNAWWQTGLSQLTSLKSRGHKSIQLN MKQQKLAVINFWHDLQQTFFGITSFKQFLESPDERVQRFRLAIRMSFTITLSFILMWSVG GIKIIWIPMNVFLLLHPVKAEMNTRIKTRFLGTLLGCFLSLFVVNWLQLPLTHLVVSSLI GIFVYALKPGTVLQVTMATIFGLCLATISLRGMYAAELRVSFVLLAIFVVCLIDLGLFVY QRILRF >gi|284795513|gb|ADDQ01000036.1| GENE 38 49924 - 50406 675 160 aa, chain - ## HITS:1 COG:lin0420 KEGG:ns NR:ns ## COG: lin0420 COG3832 # Protein_GI_number: 16799497 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 12 155 15 156 160 70 33.0 9e-13 MKDTFRLENQTIYFGTERAISASPQTIWRYLTETDKLKQWFPELEIGELGVNGFWRFILP DFEETMSFTDYAEEKYLGVTWDTGVIYFDLKEQAPHQTLLVFSESLPENFTTPRHKDIAG WSIVLNRLKQVVETPDAAPEKIDFPQIENHYLEKLTNLEN >gi|284795513|gb|ADDQ01000036.1| GENE 39 50428 - 50808 547 126 aa, chain - ## HITS:1 COG:CAC0249 KEGG:ns NR:ns ## COG: CAC0249 COG0346 # Protein_GI_number: 15893541 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Clostridium acetobutylicum # 1 126 1 126 126 158 61.0 3e-39 MFFKEIHHVAINASNYQATKNFYVEKLGFEVLRENHRPEKNDIKLDLKLGSQELEIFISD QFPARPSYPEALGLRHLAFKVEHIEEVIAFLNEQGIETEPLRVDDFTGEKMTFFFDPDGL PLELHE >gi|284795513|gb|ADDQ01000036.1| GENE 40 51020 - 52486 1859 488 aa, chain + ## HITS:1 COG:lin1223_2 KEGG:ns NR:ns ## COG: lin1223_2 COG1263 # Protein_GI_number: 16800292 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Listeria innocua # 92 474 1 383 403 535 74.0 1e-151 MGKFQSDAQQLLKAVGGKENISAVSHCATRMRFVLKDPKKADVPVIEDIPSVKGTFTNAG QFQVIIGNEVPQFYNDFSAISGLEGVSKEEGKAAAKSNLSPVQRVVSVLAEIFTPLIPAL VIGGLILGFRNILEGVPFGFLDGQTIVEVSQFWNGVNSFLWLIGEAIFHFLPVGITWSIT KKMGTTQILGIVLGITLVSPQLLNAYSVATTKAAEIPFWDFGFAQVNMIGYQAQVIPAML AGFLLAYLEIFFRKVIPQAISMIFVPLFALVPTVLAAHVILGPIGWTIGSWVSDIVNAGL TSTFNWLFGAVFGFMYAPLVITGLHHMSNAIDLQLIADFQSTNLWPMIALSNIAQGSAVL AVIFMHRGNKKEEQVSIPAMISCYLGVTEPAMFGINLKYVYPFVAGMIGSAMAGMFATLM GVRATSIGVGGLPGILSIVPQYYLPFLGAMVIAIIVPMGLTYIFRKKGIFNKVDPVDEAT GMLYSEEG >gi|284795513|gb|ADDQ01000036.1| GENE 41 52614 - 53618 1325 334 aa, chain + ## HITS:1 COG:no KEGG:EF2212 NR:ns ## KEGG: EF2212 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 334 1 334 334 580 99.0 1e-164 MDIYLKKAILHIIDRETGTPVFSEKELDLTTEYIRTYLTAKISKLSTAQTKTGTLAENSS FVDTLRGIPSDFVKKSQEVTQHWYDVYSGSEDAPSADILFILYELDTVLHVAMIKLNYKE SYTHYVDYEEESVYNKLIINRAILSSKSQKPDEGITVDLDTLAFELLEKRYEFSGEKIWY FSEKVIETQAAPSMEENIKEIKKAVKRIGKKFNEDEFELMASVKEAVYDSIEETGTIDNE QIADQVFKENVSAKLAYQEEVNESKFVDKTPPVRESREISEKKFGKQKLKMDNGIELIVP LDVYRNGDLIEFVNNPDGTVSIMLKNIEKISNQL >gi|284795513|gb|ADDQ01000036.1| GENE 42 53656 - 54009 413 117 aa, chain - ## HITS:1 COG:L177221 KEGG:ns NR:ns ## COG: L177221 COG5294 # Protein_GI_number: 15672565 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 2 117 3 116 120 84 39.0 7e-17 MKTLLKILIPIVILAGGSWGVYNYYYGGEAYYTQITTSGEKKDEKTNSGEAMTIYYYQQP AFNKNGEEKTVELNESRDQPLRMKAYLKLKVNPRKGVISWNEVTEKEVPEKALEKLK >gi|284795513|gb|ADDQ01000036.1| GENE 43 54208 - 54912 799 234 aa, chain + ## HITS:1 COG:TM1511 KEGG:ns NR:ns ## COG: TM1511 COG2738 # Protein_GI_number: 15644259 # Func_class: R General function prediction only # Function: Predicted Zn-dependent protease # Organism: Thermotoga maritima # 5 228 2 224 230 175 44.0 7e-44 MMPFYFGIDPTYILVIIGIAISGAASAYVNSTFRKYDQVRSSKHVTGTQAAQYILQKEQI NDVGVQQIAGDLTDNYNSGNKMLSLSEATAQSTSVAAIGVAAHECGHAVQDHTNYVPLRL RAAIVPVANIGSTISFPLILIGVLFSWNQTLINIGILAFSLALIFQLVTLPVEFNASRRA LSILSEGGLLTEEEVPMARKVLFAAALTYVAAALSTFLQLLRLVILFGGNNRRD >gi|284795513|gb|ADDQ01000036.1| GENE 44 54996 - 55334 556 112 aa, chain + ## HITS:1 COG:no KEGG:EF2209 NR:ns ## KEGG: EF2209 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 112 1 112 112 132 100.0 4e-30 MKASTKIGIGLSIAAVASVSVAVIASEKIIKKVSHVSNRYKVKKFVDDKFDGNQKLLSIV DDLSDDELDSVLNVVDRVKDGGSKLAEYGEKVKDNTDSLKERFFTFIEDAMK >gi|284795513|gb|ADDQ01000036.1| GENE 45 55361 - 56206 679 281 aa, chain - ## HITS:1 COG:lin0782 KEGG:ns NR:ns ## COG: lin0782 COG0384 # Protein_GI_number: 16799856 # Func_class: R General function prediction only # Function: Predicted epimerase, PhzC/PhzF homolog # Organism: Listeria innocua # 1 279 1 279 282 360 63.0 1e-99 MKITAYVASAFSKNHEGGNKAGVVFMTQPLTRTQKMAIAKELGFAETAFISDSKVADFRL EYFTPKEEVDLCGHATIGAFTIMKHLNKLLQTAYTIETNSGLLAITANDEQLFMEQTVPT FYDTLILEELSGCFDLNAVATAFPIQIVSTGLKDILVPIKNAQLLQDLQPNFEKIKLLSQ KYGVIGMHLFALSEENIICRNFAPLYDIDEEAATGTSNGALACYLHHHQILQKTNYTFAQ GYTLNAPSEVLVRLNTTPQKTIDQVLVGGRGYYVETKELFL >gi|284795513|gb|ADDQ01000036.1| GENE 46 56263 - 57114 692 283 aa, chain - ## HITS:1 COG:lin2875 KEGG:ns NR:ns ## COG: lin2875 COG2508 # Protein_GI_number: 16801935 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Listeria innocua # 1 279 1 282 293 130 35.0 3e-30 MIIENLSQLYPKGYLSKTIGSEATYSIPVDDQFFIVNKAFLSIKEQHLLEALFPISENPT ITGNHPWFSYLFQQAKLPAEGTFRMLQIQTNVTKELQAEWQFNLTKMFPDTVDCFSPSNN MYILVEEQSKNTFQQEEIQGIFLTLDTDFDCTSAVFVGNFYSSEDILRRCFHEEQRIFSE ELNSSSRTTVFSLTDVALHYFTKEAMSQNVLVEYYRRLLNKDTDIQPIISALWKNQGNIS STAKDLFMHRNTLHYRLEKFFEQTGLSLKKMDDLIFCYLLLRK >gi|284795513|gb|ADDQ01000036.1| GENE 47 57192 - 57713 590 173 aa, chain + ## HITS:1 COG:lin2867 KEGG:ns NR:ns ## COG: lin2867 COG0590 # Protein_GI_number: 16801927 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Listeria innocua # 12 164 2 154 154 191 62.0 7e-49 MGKKETTLTQEEKEIFMREAIAEAKKAEGLAEVPIGAVIVRQGEIIGRGHNLREARQEAT AHAEMYAIQEACRGIENWRLEETQLFVTLEPCPMCSGAMLLARIPEVYYGATDPKAGTAG TLMNLLEDERFNHVAYVEAGVLEEECRLLLVQFFKKLRAKKKEEKLLKNQKKD >gi|284795513|gb|ADDQ01000036.1| GENE 48 57907 - 59043 765 378 aa, chain - ## HITS:1 COG:SPy1488 KEGG:ns NR:ns ## COG: SPy1488 COG0582 # Protein_GI_number: 15675393 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Streptococcus pyogenes M1 GAS # 1 376 1 380 380 265 40.0 1e-70 MWIEELPNGKFKYFERYKDPYTEKYRRVSVTLNSKSNQAKKQAMMELQDKINNRMEKKEQ KKVSLENLLNSWWQQHQLSIRKTSVKAYGKILKYIFSNMNVDVLIRNTDTKFFQDFINDL PHSWEYKKKFKSVLNMSFTYAQDMGMIDENPINRVKVVKPPLTKENFENIESKYLEEKEV YQLLNYYYSTFQSVHHGRLAEFMYLTGLRAGEAISLTINDYVKNEHAILVNGTLDYSNGY KNATKELPKTLASFRKVELSNRAVKIIEELILEREIKFKEQTNYLFVGKTGRPIQVNSFN ASLKKANESLGKNKINKTISSHIFRHSHISLLAELNVPVKAIMERVGHVDTETTLKIYTH VTKKAKTNLVEALNKYGK >gi|284795513|gb|ADDQ01000036.1| GENE 49 59111 - 59311 214 66 aa, chain - ## HITS:1 COG:no KEGG:SP70585_0029 NR:ns ## KEGG: SP70585_0029 # Name: not_defined # Def: phage protein # Organism: S.pneumoniae_70585 # Pathway: not_defined # 1 65 1 65 304 90 70.0 2e-17 MKVGMRKPSIKKSISARTTGKAKRKLKKAVIPGYGQKGTGFIKNPKKAMYNKVYNKTTFS FWDLFK >gi|284795513|gb|ADDQ01000036.1| GENE 50 59327 - 60211 608 294 aa, chain - ## HITS:1 COG:no KEGG:jk0640 NR:ns ## KEGG: jk0640 # Name: not_defined # Def: hypothetical protein # Organism: C.jeikeium # Pathway: not_defined # 172 294 104 227 227 79 37.0 2e-13 MKKRVILTSLLLPIIFISGCSASGNDDKTKEVETHEKKQTTKIPENKLGIDSKKIIESNL NELTESKYELTNKYDSYLTSKNLKVEIFKESLSPIAFALFTKTDEKQPSALTIFSTMRLA NSVVEKKFDDLILVLENSIPDNSKKYTSKSENSIDDNKFVTFVFNNDLNSNDLDELLADV LSGKDKKAQETTSSSSQSSKVPLEYTNAKIKAEEYINHSSFSKISLYKQLQYEKFSDEAA NFAVENISTNWNKQAVNKAKEYMESMDISKEKLKDQLLYEGFTDSEITYALNNI >gi|284795513|gb|ADDQ01000036.1| GENE 51 60301 - 60774 453 157 aa, chain - ## HITS:1 COG:no KEGG:EF1276 NR:ns ## KEGG: EF1276 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 156 1 156 157 220 71.0 1e-56 MNEYELLVSEVQKKAPVIETDLFQYTGCYGLYRDGRIYIEKSLSLSEKRNVLAEELGHHD TSFGDILNQDCLENRKQELKARQYALEQLVTLDDLIKCSESGFSNHYTCAEFLGVDVETL KNVLAYYRQKFGDTHFYKGRIFEFNDLSVMILNTNLQ >gi|284795513|gb|ADDQ01000036.1| GENE 52 60791 - 61315 403 174 aa, chain - ## HITS:1 COG:SA1805_1 KEGG:ns NR:ns ## COG: SA1805_1 COG1396 # Protein_GI_number: 15927573 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 3 123 2 119 151 120 61.0 1e-27 MEDKQRNKIIATNIKKYLKESNITQKKLAEEIGISPSTMSDYMNLRSNPSHGVIQRIADY FKIKKSDIDTTYKENSDPSSLESIYNILEPERQKIVYETAKEQLVQQNKASNNVVNINKK KYDTLAAHSPDPNKVFTDEEKFKINQFLDKVDADYDKKQKECKHLFDDESDDKE >gi|284795513|gb|ADDQ01000036.1| GENE 53 61454 - 61717 389 87 aa, chain + ## HITS:1 COG:SA1804 KEGG:ns NR:ns ## COG: SA1804 COG1396 # Protein_GI_number: 15927572 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 87 1 87 87 110 80.0 6e-25 MKTLKELRVEYGLTQEELADLFKVTSRTIQNMEKDSSNIKDSLLKKYMDAFAVKYDDIFL GNEYENFVHLEEKKKSIILTFKNKQLT >gi|284795513|gb|ADDQ01000036.1| GENE 54 61756 - 62007 214 83 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256961383|ref|ZP_05565554.1| ## NR: gi|256961383|ref|ZP_05565554.1| predicted protein [Enterococcus faecalis Merz96] # 1 83 1 83 83 153 100.0 3e-36 MSQITLAKTIEVQQAWMAKDEAIIYFGYQHHKPTFQKLLREFKEHNDFKDGYRLVTSCMP IIHIQKFDEFLVWREKNKYKRNK >gi|284795513|gb|ADDQ01000036.1| GENE 55 62027 - 62782 664 251 aa, chain + ## HITS:1 COG:CAC1945 KEGG:ns NR:ns ## COG: CAC1945 COG3561 # Protein_GI_number: 15895218 # Func_class: K Transcription # Function: Phage anti-repressor protein # Organism: Clostridium acetobutylicum # 76 247 74 242 244 79 30.0 6e-15 MADLVIMKNEQAVTSSLQIAETFNKNHRDVLAAIDDLKEGVAENYADLFYEDTYIHPQNK QSYRQVVMNRDGFTLLAMGFTGQKALQFKMKYIEAFNQMENHIKEQLDTSTLSPELQFMN SVVQSLAKQEIANKRLEHKVDNITDIIALNTTDWRKECRSLVNKMAKTQGEFGAYQEIQT AIYDEVDRRAGSSLKTRLTNLKNRMAGEGVSKSKRDKMNKLDVIDSDKRLKEIYLAVVKD FAIKYGIWKEN >gi|284795513|gb|ADDQ01000036.1| GENE 56 62784 - 63080 467 98 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256961385|ref|ZP_05565556.1| ## NR: gi|256961385|ref|ZP_05565556.1| predicted protein [Enterococcus faecalis Merz96] # 1 98 1 98 98 158 100.0 1e-37 MDIEEKRALGNFLSTIISEESANQLVNLEGQKLKDVYYTLQEQMEYEGIAPEEPTVKSVI NEIRELLEITPSADFGIEDYQDLIYQKVDMLSSILGIE >gi|284795513|gb|ADDQ01000036.1| GENE 57 63094 - 63327 286 77 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256961386|ref|ZP_05565557.1| ## NR: gi|256961386|ref|ZP_05565557.1| predicted protein [Enterococcus faecalis Merz96] # 1 77 1 77 77 112 100.0 8e-24 MNNEKKTKYDETKEHYLSKFKRNNDVEKFGFSKEAEKAGKIILDELKNRDLTYDDAYASL QWAYNKLQYESNFISIR >gi|284795513|gb|ADDQ01000036.1| GENE 58 63314 - 63805 395 163 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256961387|ref|ZP_05565558.1| ## NR: gi|256961387|ref|ZP_05565558.1| predicted protein [Enterococcus faecalis Merz96] # 1 163 1 163 163 290 100.0 2e-77 MNLSQVQAVYYLLYAMQFKDNEKKEFSLVVNYKGKLLTAEFLPLNDSKTHISLEEFDYDF DIQKKTINGCLATELFSIWRSSVESRIFSTKQAFSRPDLLLKKVLDFVSENSLKFESQKP VTTLVKNVHFLESGTRLDSMLLADDNFEVLSIELNNNAKFIGY >gi|284795513|gb|ADDQ01000036.1| GENE 59 63866 - 63976 215 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSKENIQDKYHESLKERNITDPYKELAERLIGVKQS >gi|284795513|gb|ADDQ01000036.1| GENE 60 63987 - 64172 302 61 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256961388|ref|ZP_05565559.1| ## NR: gi|256961388|ref|ZP_05565559.1| predicted protein [Enterococcus faecalis Merz96] # 1 61 1 61 61 76 100.0 6e-13 MAYTIEQESWILNQIKKERKQLQDDRAALRKSEQLTEGKAYQIEKELEFLRYLEIQNRMH I >gi|284795513|gb|ADDQ01000036.1| GENE 61 64184 - 64357 174 57 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256961389|ref|ZP_05565560.1| ## NR: gi|256961389|ref|ZP_05565560.1| predicted protein [Enterococcus faecalis Merz96] # 1 57 1 57 57 92 100.0 1e-17 MRKIYNLRRIAVLLIVFGLGLLVGGNFNPIIQNVYIGLFIIWTLFYDLALEDREVNK >gi|284795513|gb|ADDQ01000036.1| GENE 62 64354 - 64464 161 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTRKEKLQQTKKLADLWYRQQKNQIYIAQQKERRGI >gi|284795513|gb|ADDQ01000036.1| GENE 63 64465 - 64620 205 51 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256961390|ref|ZP_05565561.1| ## NR: gi|256961390|ref|ZP_05565561.1| predicted protein [Enterococcus faecalis Merz96] # 1 51 1 51 51 79 100.0 6e-14 MFQAVGKDSLKIYVVEKTKALVFQNLKEKYPDTAINKAVFPEALFIQETKK >gi|284795513|gb|ADDQ01000036.1| GENE 64 64677 - 64922 365 81 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256961391|ref|ZP_05565562.1| ## NR: gi|256961391|ref|ZP_05565562.1| predicted protein [Enterococcus faecalis Merz96] # 1 81 1 81 81 119 100.0 6e-26 MRVEVDSMQRIVLIDNHSPYGSLIFEKDAINNHVAVYQDSEDEEVRSVFESLDESAYFKK VELIEGLEKVLSLLKEEEQNE >gi|284795513|gb|ADDQ01000036.1| GENE 65 64915 - 65592 762 225 aa, chain + ## HITS:1 COG:no KEGG:LM5578_2513 NR:ns ## KEGG: LM5578_2513 # Name: not_defined # Def: hypothetical protein # Organism: L.monocytogenes_08-5578 # Pathway: not_defined # 5 147 4 140 219 77 36.0 2e-13 MNNYSENLEKLFDGMYKLKSKLIQPKFDAEVAYSTKKGGMNFQYATLKAIEEAIRKAAQE SEIGIDFQQNVVNENNALKVTTIITHISGQYIIHGPFEFPNSDTNPQGLGSLTTYARRYS LSAAFGIAADKDDDGQTAAEKNSDTSKVDLISGKQLATLNDHIRQLSELSNSELDYVRNE LSKELNVDVNENMPASMFKKAMEVLKQWIQQFQPQPEENITWGQN >gi|284795513|gb|ADDQ01000036.1| GENE 66 65535 - 66515 745 326 aa, chain + ## HITS:1 COG:no KEGG:JDM1_0973 NR:ns ## KEGG: JDM1_0973 # Name: not_defined # Def: hypothetical protein # Organism: L.plantarum_JDM1 # Pathway: not_defined # 20 325 1 285 286 135 29.0 3e-30 MDTTIPTTTRRKHYMGAKLMTNELTTELQFSVDFKASEITIQNEVQLASIVDSAVEHYST MIFTDENIPDAKKARADLKKVSDLLENQRKNIKKEYSEPLKKFEDKIKKYTGKINLVRSS IDENIKSYEETERNKRNEKLQEVIAEMSENYGVDINEFEISDSWLNKTSFTAKGELTKKT IEDIATVMYSAAKEKERIKNDKLIVENYAKAVGLDSFSWVALIDKGSTAPELIKEIDSAV ALKKEQEERERAKREHDEAIAALKTETINNKTVDTATGEIITEKAPKTSKKQQEKTVTLR LTAEHQKLVALNNFIINNGIQVEVIE >gi|284795513|gb|ADDQ01000036.1| GENE 67 66614 - 67192 415 192 aa, chain + ## HITS:1 COG:no KEGG:JDM1_0977 NR:ns ## KEGG: JDM1_0977 # Name: not_defined # Def: hypothetical protein # Organism: L.plantarum_JDM1 # Pathway: not_defined # 17 188 48 221 230 155 44.0 1e-36 MYFDYTGPREVEIRFIDPRKFSVAQRRFIFAMLEDIFSFTGQETEVLKEMFYLRFEALQG YEISLRNDSTNTMDDATILANIILNFIFENNIPFKKGYDILPANQEYYFYKCITNRVCCI CGKTGADIDHFDKALGRRKRKSVDHTEYTYAGLCRCHHTEKHNIGITAFKKKYHVKGIKL NQETIKKLHIGV >gi|284795513|gb|ADDQ01000036.1| GENE 68 67211 - 68143 551 310 aa, chain + ## HITS:1 COG:no KEGG:CLJ_B1878 NR:ns ## KEGG: CLJ_B1878 # Name: not_defined # Def: putative phage replisome organizer # Organism: C.botulinum_Ba4 # Pathway: not_defined # 7 156 6 158 286 107 42.0 6e-22 MSDKQKKRYYWLKLKENFFEEDTIEWLEEQPNGKEYCLIYLKLCLKSLKTDGVLVRNVGS MLIPYDAETLARVTNSTVDTVKVAMDLFKKIGLIQLLDTGEIYINQLNELVGSETEAAKQ KRLQRSKVDNVPKLSSECPENVAQSIELEYRDKSIEKDNKEEPKKSPCKYSDEHLRLAQK LQNNLINDFPSEMKRVNIEKWADTFRLIEERDQQTIAAIDYVLDWLPTNSFWFGNIRSAS KLRTQFEKLKFEIKNEKERGQQRAAYQRQNVRTENLPEWAKEPNNQQEEKLSPEEQAELD RQIKEYLEGK >gi|284795513|gb|ADDQ01000036.1| GENE 69 68143 - 68391 306 82 aa, chain + ## HITS:1 COG:no KEGG:EF2128 NR:ns ## KEGG: EF2128 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 82 1 82 141 105 68.0 3e-22 MRIILPIEPKPQSRPRFARRGNYVQTYEDSAMRAYKQKVKAYLRKTKPELIEKGAIFTHI TFYIAAPKSLLSSKKKRLEVEL >gi|284795513|gb|ADDQ01000036.1| GENE 70 68610 - 68699 89 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLKFKEFNIQLFDVHIYIKRLSSFKTNKK Prediction of potential genes in microbial genomes Time: Sun May 15 12:48:07 2011 Seq name: gi|284795512|gb|ADDQ01000037.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont78.1, whole genome shotgun sequence Length of sequence - 27192 bp Number of predicted genes - 33, with homology - 31 Number of transcription units - 10, operones - 6 average op.length - 4.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 65 - 124 11.9 1 1 Tu 1 . + CDS 314 - 1816 1075 ## LSEI_2004 hypothetical protein + Term 1841 - 1880 7.0 - Term 1829 - 1868 6.2 2 2 Op 1 . - CDS 1880 - 3145 1130 ## COG0739 Membrane proteins related to metalloendopeptidases - Prom 3172 - 3231 1.5 3 2 Op 2 . - CDS 3234 - 3614 399 ## gi|256961426|ref|ZP_05565597.1| predicted protein 4 2 Op 3 . - CDS 3627 - 4886 1401 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) 5 2 Op 4 . - CDS 4891 - 5094 255 ## EF2803 holin 6 2 Op 5 . - CDS 5091 - 5312 223 ## gi|256961423|ref|ZP_05565594.1| predicted protein - Term 5320 - 5362 7.0 7 3 Op 1 . - CDS 5380 - 7338 1852 ## EF1291 hypothetical protein 8 3 Op 2 . - CDS 7350 - 7523 282 ## gi|256961421|ref|ZP_05565592.1| predicted protein 9 3 Op 3 . - CDS 7524 - 9542 1346 ## EF1290 structural protein, putative 10 3 Op 4 . - CDS 9559 - 10488 798 ## EF1289 tail protein, putative 11 3 Op 5 . - CDS 10489 - 13896 2801 ## M28_Spy1236 phage protein 12 3 Op 6 . - CDS 13912 - 14163 110 ## gi|256961417|ref|ZP_05565588.1| phage protein - Prom 14199 - 14258 2.2 13 4 Tu 1 . - CDS 14262 - 14612 413 ## SPy_0992 hypothetical protein - Term 14620 - 14655 3.3 14 5 Op 1 . - CDS 14667 - 15122 650 ## gi|256961415|ref|ZP_05565586.1| conserved hypothetical protein 15 5 Op 2 . - CDS 15203 - 15733 642 ## LACR_1766 hypothetical protein 16 5 Op 3 . - CDS 15749 - 16138 243 ## LACR_1767 hypothetical protein 17 5 Op 4 . - CDS 16135 - 16515 275 ## M28_Spy0985 phage protein 18 5 Op 5 . - CDS 16490 - 16825 248 ## LACR_1140 hypothetical protein 19 5 Op 6 . - CDS 16822 - 17154 432 ## LACR_1139 hypothetical protein 20 5 Op 7 . - CDS 17228 - 18160 1065 ## SaurJH9_0892 hypothetical protein 21 5 Op 8 . - CDS 18173 - 18772 748 ## BH3529 hypothetical protein - Prom 18800 - 18859 2.7 22 6 Op 1 . - CDS 18895 - 19158 308 ## lin0103 hypothetical protein 23 6 Op 2 . - CDS 19253 - 19522 176 ## gi|257422058|ref|ZP_05599048.1| predicted protein 24 6 Op 3 . - CDS 19523 - 20461 771 ## COG5585 NAD+--asparagine ADP-ribosyltransferase 25 6 Op 4 . - CDS 20466 - 22004 1478 ## NWMN_1016 phage portal protein 26 6 Op 5 2/0.000 - CDS 22022 - 23320 611 ## COG1783 Phage terminase large subunit 27 6 Op 6 . - CDS 23313 - 24116 645 ## COG5484 Uncharacterized conserved protein - Prom 24222 - 24281 5.9 - Term 24245 - 24277 1.1 28 7 Op 1 . - CDS 24303 - 24866 456 ## gi|256961401|ref|ZP_05565572.1| predicted protein 29 7 Op 2 . - CDS 24893 - 24973 74 ## - Prom 25025 - 25084 7.1 - Term 25070 - 25112 4.1 30 8 Tu 1 . - CDS 25152 - 25217 63 ## - Prom 25241 - 25300 7.6 - TRNA 25172 - 25245 54.0 # Lys TTT 0 0 - Term 25266 - 25299 2.0 31 9 Op 1 . - CDS 25307 - 25891 340 ## gi|293383716|ref|ZP_06629624.1| conserved hypothetical protein 32 9 Op 2 . - CDS 25914 - 26828 638 ## gi|256961399|ref|ZP_05565570.1| predicted protein - Prom 26942 - 27001 6.5 - Term 26862 - 26918 14.1 33 10 Tu 1 . - CDS 27073 - 27192 65 ## gi|293383718|ref|ZP_06629626.1| conserved hypothetical protein Predicted protein(s) >gi|284795512|gb|ADDQ01000037.1| GENE 1 314 - 1816 1075 500 aa, chain + ## HITS:1 COG:no KEGG:LSEI_2004 NR:ns ## KEGG: LSEI_2004 # Name: not_defined # Def: hypothetical protein # Organism: L.casei # Pathway: not_defined # 2 498 8 508 508 115 25.0 4e-24 MKYFFKENKGLAIYSFLMVFATYGIKLFNNTYAIDTMHLMTNYRGYLKHWVSIGRPGLVA LKLLTYNYVNVYFLNLLAIIFFAIAAILLCYYVDLSTKQIYNKKYLYIIPSIFPTSQLFS EQFYFVLQNFEFSLGICLVILSLITIYHIPNKIFKLFGFLLLTFTLTMYQSFFVFACTLI LFKILMALYFAQLNDLKISFKDYAFKIGHFILLAISSLVLSQLMAMLAKKVLKVESSYLD NMILWGKRPFIDSINDIKDYAKELFFPPVGDTFFTPLFLICVLLLVIVLINMSYLKRKNV FFIFITLLGILITPLMFTILGGKRPAIRGEVPNFPAVLALLLVFIMIYWGYNFVLKHLLI GIVILFTFIQVRETTNLEYSEYLTAEEDLRTAEMITNNIYSMEIENPESYKLLMYGNRSP RNVSNIKGETNGVSLFEFMPNSVHTSLNTLLYMKTFGLNFNDPTPEDFEKHKALQAEMNV WPSKDSIRVVDDCIIVNLSK >gi|284795512|gb|ADDQ01000037.1| GENE 2 1880 - 3145 1130 421 aa, chain - ## HITS:1 COG:TP0155 KEGG:ns NR:ns ## COG: TP0155 COG0739 # Protein_GI_number: 15639148 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Treponema pallidum # 2 137 237 367 371 87 37.0 4e-17 MADTWLSPLAVSYQATQEWDEPDYLSGGQAGIHGGIDLAPKAGTNPPVYSAKSGTVEEVV PNHPIGGNYIVIRHMDNYWTYYGHLATINVSVGQQVTNQTVLGLCGATGGATGIHLHFEV WRGGKWQRINPREVINLDGSGRDSSNNGGNGGIYTGGALLNAGKSISESNIRLIISAGKK YNIKPSFMIAQMFIESHWGDPSISIVGSKDNNWAGISEPFSVPADLGINMSRGSARPVGE GGYYIHFATMNDFFKAYAFVLSKRNGLYNVEGANSIEEYCKGLFRIGGANSDYAATGYQN YFNMLIPTYNSINKQNPGKLAQIDASTEEITNNGGLTTMQCLYERPINPNTGALDINGSA TTMMFCNGVNTRRVYHNDEVNIVKELYRKNNGKEIPVYYKKDWPKTSPWYIRLEAMFPVV K >gi|284795512|gb|ADDQ01000037.1| GENE 3 3234 - 3614 399 126 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256961426|ref|ZP_05565597.1| ## NR: gi|256961426|ref|ZP_05565597.1| predicted protein [Enterococcus faecalis Merz96] # 1 126 1 126 126 209 100.0 4e-53 MKSEIKKHIRQLLCDYKKIEKQLKKYEDALVYPQSSFSLYFEEKSNEKISLNQIVFHKFF LNTVEEVLSDATSDVRDIFISKYKNGYPRKKNEIVAYETYLSLSTIKRRDSEFLEELARQ LGWLEV >gi|284795512|gb|ADDQ01000037.1| GENE 4 3627 - 4886 1401 419 aa, chain - ## HITS:1 COG:SPy1006 KEGG:ns NR:ns ## COG: SPy1006 COG3757 # Protein_GI_number: 15675010 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Streptococcus pyogenes M1 GAS # 91 254 214 379 444 144 45.0 2e-34 MKKKILVGALIALFFMPLNVFAAKGDQGVDWAIYQGDQGRFGYAHDKFAIAQIGGYNASG IYEQYTYKTQVASAIAQGKRAHTYIWYDTWGNMDIAKTTMDYFLPRIQTPKNSIVALDFE HGANSDVNANTETILYGMRRIKQAGYTPMYYSYKPFTLQYVDYQQIIKEFPNSLWIAAYP SYEVTPSPLYDYFPSMDGIAIWQFTSTYIAGGLDGNVDLTGITDSGYTDTNKPETDTPAT DAGEEIEKIPNSDVKVGDTVKVKFNVDAWATGEAIPDWVKGNNYKVQEVTGSRVLLEGIL SWISKGDIELLPDATIVPDKQPESTHVVQYGETLSSIAYQYCTDYQTLASLNGLANPNLI YPGQTLKVNGSVVSNVYTVQYGDNLSSIASKLGTTYQALAQRNRLTNLNLIYPGQTLIY >gi|284795512|gb|ADDQ01000037.1| GENE 5 4891 - 5094 255 67 aa, chain - ## HITS:1 COG:no KEGG:EF2803 NR:ns ## KEGG: EF2803 # Name: not_defined # Def: holin # Organism: E.faecalis # Pathway: not_defined # 1 67 1 67 68 115 98.0 6e-25 MILPDKYYKIIKWGVLTVLPASSVLVATLGKAYGWQQTDMAVLTINAIATFLGVVTGVSA YNLKDKE >gi|284795512|gb|ADDQ01000037.1| GENE 6 5091 - 5312 223 73 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256961423|ref|ZP_05565594.1| ## NR: gi|256961423|ref|ZP_05565594.1| predicted protein [Enterococcus faecalis Merz96] # 1 73 1 73 73 120 100.0 4e-26 MSNEIVVAVIGLVGSTFGAFIGVVASANLTAYRIEQLEKKVEKHNGVIERTFKLEGRMQE AEHDIIELKGAKK >gi|284795512|gb|ADDQ01000037.1| GENE 7 5380 - 7338 1852 652 aa, chain - ## HITS:1 COG:no KEGG:EF1291 NR:ns ## KEGG: EF1291 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 394 1 394 589 506 67.0 1e-141 MAIEQIKETDTLNQGRIKINAILDQSNASSEKVDAYQEELKNGVDDAKKIADTAGKEAIK VAEEAGAQANATANQAMDNANTAITIAGNAVSTANNNKQEFDALRNDFDKLVGEAGDSNP EIVQARTDTQGVTQPTLATRLLVDFNDRMTKAEGVSLLSGTTNVKIPMDFSGKTAGNTAT NAHQYFTDVTAKSLKKPKDIWNEVSQAEYNKLVSRDDSGVSSGSTQTGVIPQQLGSFNAL EAAKKLIPQIFEGLNQEEAVSLLKDSFVAFTISERAKATSPNNKTIKVSTYIESTDSWAT QIQESAGEYKDISAQITDKNFITSEGVIYLINYTDPSNGVTTANLDIDYSAIQLEISVNV QNVLEKSGFVKSKQLNDHVDDKENPHQVTAEQVGAYSKTDSTDLFINKTEAENGLFVAKK TVVNSQDWDKILDAGIYTVFGASGANRPYSGAAYGALVVYADNTFVSQTYMYKGATYTRS RQGSPAAWTPWNKMLVEKEQPFEAWYLPGTNHAGFKNKARYSLGPEFSNVGNRLGLSMKS NPLEWNSGRWQAKVLRDCKLNVSGTVKYQVGGSRGVLYAYTHIDKGLDAGASDLGIGAAV GAVGGLNYQNVAAFDLNVTLKKGEYFAFRLELAADKQLDYTQLSSMRITELV >gi|284795512|gb|ADDQ01000037.1| GENE 8 7350 - 7523 282 57 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256961421|ref|ZP_05565592.1| ## NR: gi|256961421|ref|ZP_05565592.1| predicted protein [Enterococcus faecalis Merz96] # 1 57 1 57 57 97 100.0 2e-19 MRLTVKLISKQEEFIINDESGKTLDDYFAELIDNSSPFIKIGNRILQKATIEYINAE >gi|284795512|gb|ADDQ01000037.1| GENE 9 7524 - 9542 1346 672 aa, chain - ## HITS:1 COG:no KEGG:EF1290 NR:ns ## KEGG: EF1290 # Name: not_defined # Def: structural protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 404 1 404 485 613 68.0 1e-174 MLMAMDLKREYTAVLDNAYNVGYEKIENQIGNLEFSMPLDDPKNEFLQEMLWVELTDNEN EYIGLYRVMPSTVRKDASNNSITYTANEALCTLLDTVLFGYHELVNRKTVDVINYLLNKQ RSKHWVLKKCEFTRYFSYAWENENGLADALFSIPQAFDEDYMWQWNTKVYPFELSLVKPP KEPVARIQEGYNMQGFEIERDPNNLVNRVYPLGAGEGVNQINIKSVNKNVPYVEDSQSIK DHGLVEYVWVDQRFTVPQALKDNAINMLKKWAQPKISWDVTAADLLKLTDEPLSIDKLRQ GTVIMINTDDFGSINLRIKKETKQDVFGAPQDIQLELGNLSDDFTTTMSDLKRKQEINET YSQGATNILNYSYQDNCEKAYPAEIEFFLDDDVFHVNTVELTFKTKRYRGYTKAVKGGGA TVKSTSAGGASTQTSSAGGGSVVSSSAGGGYSSGSTTGGGGGSIQSSSVNGQSSQTSSAG GDHNHLVATNNGSTESSAFYREMDAGSGMRFRLMSTASTDWYTKTSSGNHTHNVTTPAHS HTVNTPNHSHNFNISIPNHTHSISVPSHSHQVRIPAHTHQITLPDHSHPLEWGIYEAPSS ATSVDIVVDGTTIPVHDTSQQRLNIVNYLRKTSGGKISRGNHTIKIIPNKLARIEAQVIC RVFIQSQLGGQF >gi|284795512|gb|ADDQ01000037.1| GENE 10 9559 - 10488 798 309 aa, chain - ## HITS:1 COG:no KEGG:EF1289 NR:ns ## KEGG: EF1289 # Name: not_defined # Def: tail protein, putative # Organism: E.faecalis # Pathway: not_defined # 2 309 1 308 308 505 77.0 1e-142 MLYNFIDVNEQQTKASLPSEAMNFNGSFLEDLVPGYRTLSVVGRELAPTEIQSYQLGIRD GMRHVYARIPERELTVKFKVEANSNEAFRDSFNRLNVALFTEKDVQIWFNDEPEMLWSGS KSDVDAVPEGLNRVVGTFTILLNNPYKYTRSDATSVMWGSTEITFQANYLMGNTGSGAVD LPIVIEGGAYWGSTMITFQNRSYLMGDNGQEVKPIEIYPTVEGLKVKPIITIKGTGRGVW IKTRSDTIDIGDFDKSEIVIDTEQFNITKNGKPMIRPMNDFYIYPNEPLYIQAKDSTFNL TIRYPNRFL >gi|284795512|gb|ADDQ01000037.1| GENE 11 10489 - 13896 2801 1135 aa, chain - ## HITS:1 COG:no KEGG:M28_Spy1236 NR:ns ## KEGG: M28_Spy1236 # Name: not_defined # Def: phage protein # Organism: S.pyogenes_MGAS6180 # Pathway: not_defined # 33 1086 23 1043 1093 587 37.0 1e-165 MESYSVEAILTATDRTFSSTMSSAERSMAGVNKQSGELGDGLDKSTTKGNQLGKSILSIG AGVGAVKLVSTAVNMVKDSVEGAINRFDTLNKYPVVMKALGYSTEDVDRSMTKLSDGIDG LPTSLDEIVSNTQQLAISTGSLSKGTDTAIALNDAFLASGASTADATRGMQQYIQMLGKG EVDMQSWRTLQETMPIAMDKVAKSFKEQGVNSVNQLYDALKEGDITFNEFNNRLIELDKG VGGFADLAKKNSKGIKTSWANIKTATVKGVTTVIKSFDELSKAVTGKNIAENLDSLKNVV NITFKAIDAAIQSTIPLMKLFGKAITSIGTALTPLLPTIASFAATFTALKVIQQVTGYIK QSELAIKAYTTAISLYNGISKLATLSTTALGRAWMLNLAADKANSAAIAIKTGLLVAQNT IVGVLTGTISLATVATTVFSTAMKLLLGPIGWVIAAIGGLVAVGVNLWKWLNKETESTKA VKKEQENLMKTTDDLIKKNQEHAQSRKDEAIELENTKEKYNSMISEMATLAAKEKLSNSE KKRMTEIVEELNGKMTGLNLVYDEQSNKLSEMPGKIQQQMDAYSALDKASQAQEDINKML QQRNDNEAKLMEINAAREKWNQTLKESGGNTKEARENIEKLGEQEKVLMGVQEDLRNDII NTAKTHESAIQTASQAVANGVLEQTVSYYSLKGKTKETMDAMRAEYSSLETKVGSAFDVI EQKQAISVDQMAANLQKNQEAVSQWSTNIATLAQRGVDEGLLEQLRKMGPEGAAQAAELV NSSDEQLQRLNDVYRNTGETSMNAMKEGYQLGKNGVNDEIASLIPTQKDTLMTQIKSTDF SSVGKSVTEDFKAGIENGRNAVAEMTKGIVPQMGTDMKGEVEKANFPDIGKAIPQGLEKG IGANKQLPVKTSNQMIDDVVSGARKGLDSHSPSRVFHSIGEDVDSGLSNGIEQNAMNPVR AVESIVDKIIFAMDKLPSEMNSIGANAIDGLTNGINANANSALAAARGVADQIVSTMKSA MDIHSPSRVMRDEVGKMIPAGVAVGIDKYSNFVEKSMQRLSKKVAMPALDNLNSNLSFSG GTQSLAFSGDVSSKFTVEVPVILDSTEVARVIAKPMSKELQNQQDKKNVSLGRRR >gi|284795512|gb|ADDQ01000037.1| GENE 12 13912 - 14163 110 83 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256961417|ref|ZP_05565588.1| ## NR: gi|256961417|ref|ZP_05565588.1| phage protein [Enterococcus faecalis Merz96] # 1 83 3 85 85 134 98.0 2e-30 MYEYEVRLLSFQLKRLDHERDLYLQSWLNNQIKATKGKKSEPYYKEFNKFFNYEEREKLI LGKSLIDEKVDIGAIDLLRKANK >gi|284795512|gb|ADDQ01000037.1| GENE 13 14262 - 14612 413 116 aa, chain - ## HITS:1 COG:no KEGG:SPy_0992 NR:ns ## KEGG: SPy_0992 # Name: not_defined # Def: hypothetical protein # Organism: S.pyogenes # Pathway: not_defined # 1 116 1 116 117 101 43.0 1e-20 MQIEIKGKKYNCIFGVKFIRELDKQHGVVRNDVNLGMGLTTLLPQLVSGNIVVLSDVLYT ATITEKSRPSKDEVDEFVETVDDIEALFDETLKNLEESNAGKLTVRNFKKALMENK >gi|284795512|gb|ADDQ01000037.1| GENE 14 14667 - 15122 650 151 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256961415|ref|ZP_05565586.1| ## NR: gi|256961415|ref|ZP_05565586.1| conserved hypothetical protein [Enterococcus faecalis Merz96] # 1 151 1 151 151 213 100.0 3e-54 MDTFKIYKGQTEVVSGTSPLTITGMEPDTSVPAGEYQVTRVVNGKESERVDIPAFKTLSI AVTGLEFSPKTSTADAGTAGSRQITATVLPENATNKKVTYKITPETEGLAVSETGNITWT EAVPAGVYTTTGTTEDGKKTAQHTLTLNNQA >gi|284795512|gb|ADDQ01000037.1| GENE 15 15203 - 15733 642 176 aa, chain - ## HITS:1 COG:no KEGG:LACR_1766 NR:ns ## KEGG: LACR_1766 # Name: not_defined # Def: hypothetical protein # Organism: L.lactis_SK11 # Pathway: not_defined # 8 167 6 166 169 173 57.0 3e-42 MANEAKVAAKGIDIILLFRLLKKSKEEAAWKLAFQTEHENTKTKDSDSVTTKDGPIRIPG SLEIDFSATSILSVGDPYVDQLEEALDNDDIIEIWEINKAEKGTGDNADKYKATYYQGYV TSFGKSPNAEDTVEVSLEFGINGKGAKGFATLTADQEEVVQYVFKDTTIETDDPGK >gi|284795512|gb|ADDQ01000037.1| GENE 16 15749 - 16138 243 129 aa, chain - ## HITS:1 COG:no KEGG:LACR_1767 NR:ns ## KEGG: LACR_1767 # Name: not_defined # Def: hypothetical protein # Organism: L.lactis_SK11 # Pathway: not_defined # 1 128 1 128 129 183 67.0 2e-45 MIKTRDQSIFDEVYKKCQSLGYETYDYKPMNDVGYPFVELEDTQTLHQANKTDIKGSVTL NLSVWGLAKKRKQISDMASAIFAEALSISETEGYYWSLNIQSSGIRLVDDISTNTPLKRA MISLEFKIL >gi|284795512|gb|ADDQ01000037.1| GENE 17 16135 - 16515 275 126 aa, chain - ## HITS:1 COG:no KEGG:M28_Spy0985 NR:ns ## KEGG: M28_Spy0985 # Name: not_defined # Def: phage protein # Organism: S.pyogenes_MGAS6180 # Pathway: not_defined # 1 126 5 121 121 87 44.0 2e-16 MARSQVRINGLAGISKKLKRNAQLDDVKKVVRNNTAELTANMQAEAGKVLTGHWEGKKFV KPTGATKRSIIMRLSNNGFSGHTGPGTEYAPYLINGTRFMVKRDFFLPPLKQQKVKFRTD LERLMK >gi|284795512|gb|ADDQ01000037.1| GENE 18 16490 - 16825 248 111 aa, chain - ## HITS:1 COG:no KEGG:LACR_1140 NR:ns ## KEGG: LACR_1140 # Name: not_defined # Def: hypothetical protein # Organism: L.lactis_SK11 # Pathway: not_defined # 1 101 1 101 103 133 59.0 2e-30 MRYLDEITFVKKSSESHYDPNSGEWIEEEPFRKTADVNVTDIGTNRSITIFGSIKEGAKV IRTQPLFVIPEFDYIEFEGKTWEVITSRVPALRNSLIIQEVTIDGKKSSKN >gi|284795512|gb|ADDQ01000037.1| GENE 19 16822 - 17154 432 110 aa, chain - ## HITS:1 COG:no KEGG:LACR_1139 NR:ns ## KEGG: LACR_1139 # Name: not_defined # Def: hypothetical protein # Organism: L.lactis_SK11 # Pathway: not_defined # 4 107 3 109 110 96 58.0 3e-19 MSEIANDVKKLLNGSLDEKLEIIERRTKDRLQNILNVIELPKSFDSVVYEVTLKRFNRIG QEGMQSYSQEGLSMAFPDSDFSEYQDEIEEYKNKEIEELYKPKRGRFTFS >gi|284795512|gb|ADDQ01000037.1| GENE 20 17228 - 18160 1065 310 aa, chain - ## HITS:1 COG:no KEGG:SaurJH9_0892 NR:ns ## KEGG: SaurJH9_0892 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_JH9 # Pathway: not_defined # 1 303 1 310 324 315 55.0 2e-84 MKKKQLMKMDIQMFAQTWNPDNVTVLEKKDGTIPDKYNTLILKDVMENSKLMQLAKYEEM DGKEKKFEYFAEGPGAYWVGEGEKIKTSKPKWLNVTMTAKKIGVIIPVSREYLTYKMSDF FTQMQPKIAEAFYKKIDAATILDKENPFSQSIEKSVIAASNVIEGDLTYDNILALEDLLG EGEYDPNAFISNRKNRTVLREASKKIGDTTQFIYDRVSNTIDGLPVADLKSMDKGNLYTG DFDYLRYGIPFNINFKISEEAQLSTLTNEDGTPVNLYEQELVALRATMDIGFMVIKDEAF AKIQTKAAGE >gi|284795512|gb|ADDQ01000037.1| GENE 21 18173 - 18772 748 199 aa, chain - ## HITS:1 COG:no KEGG:BH3529 NR:ns ## KEGG: BH3529 # Name: not_defined # Def: hypothetical protein # Organism: B.halodurans # Pathway: not_defined # 2 177 10 200 239 77 35.0 4e-13 MKTKKLLLPMHLQFFADNPDTGTGGTDQPAGGQEQTPPVDSGKDKGNEKTFSRGEVAKMI AAEVSKTKEAWEKEQQEKQAEAEKLAKMNAQEKAEHEKKQLEAKIAELERSQALVSMSKE ASKMLSEASLPHDDDLLGLIVSDDAEATKKAVAIVTNYVSMIKKENARQKTPGEGGQFST DKKETESVAALAASKRIVK >gi|284795512|gb|ADDQ01000037.1| GENE 22 18895 - 19158 308 87 aa, chain - ## HITS:1 COG:no KEGG:lin0103 NR:ns ## KEGG: lin0103 # Name: not_defined # Def: hypothetical protein # Organism: L.innocua # Pathway: not_defined # 1 87 1 87 87 122 77.0 5e-27 MDSQEFIDKCKEIVSNYANKHLDKSDQKEITKKDVFVVWSCKTLQNNKALLSTNLLDGMY YELTLNGDKQEIYFDAYKKWENKAIKV >gi|284795512|gb|ADDQ01000037.1| GENE 23 19253 - 19522 176 89 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|257422058|ref|ZP_05599048.1| ## NR: gi|257422058|ref|ZP_05599048.1| predicted protein [Enterococcus faecalis X98] # 1 88 1 88 89 134 89.0 3e-30 MDNLYKCNQCHKHTPLIRKSENIMKDVEHHYAECANCGYKATIMYMNTEIKLLMYEQRKT KFGTKKKGKLTEKLNRLISELRKEVEESL >gi|284795512|gb|ADDQ01000037.1| GENE 24 19523 - 20461 771 312 aa, chain - ## HITS:1 COG:SPy0975 KEGG:ns NR:ns ## COG: SPy0975 COG5585 # Protein_GI_number: 15674985 # Func_class: T Signal transduction mechanisms # Function: NAD+--asparagine ADP-ribosyltransferase # Organism: Streptococcus pyogenes M1 GAS # 3 296 8 309 541 136 30.0 4e-32 MSYLKNREESWIKEQMKLDRNREKEIVQQLQNAIDAIQTEIVANWDRFSNGQKITISEAR KMANKMDVKRFERKAKEYVKNKDFSPQANKELKIYNLVMRVSRLELLKSQIGLELITLFD ELDKWGYSQLSEAAKDEYLRQAGILGETVKENYSSKVRKIVNASFKSSEFPSFSDNIWQN FVEMKADLEKIITQAITQGKNPRAVAKEMAKFLKPNQLNIRYKLNRLMMTEISGVQTDIQ KQSYLDADIEEYDYIAEPFACEICKKVAKGSPYKVLKMKKGINAPYMHPHCKCSTVPKVS EDYEKSLKERGL >gi|284795512|gb|ADDQ01000037.1| GENE 25 20466 - 22004 1478 512 aa, chain - ## HITS:1 COG:no KEGG:NWMN_1016 NR:ns ## KEGG: NWMN_1016 # Name: not_defined # Def: phage portal protein # Organism: S.aureus_Newman # Pathway: not_defined # 8 481 3 477 511 327 42.0 6e-88 MENEEIQKVNEFEHGSDISYSSGVNENFVSFGVESNIHYRYSSAEELLDNTDVLAKMIAH HNEHQVPRLQVLDDYYKAKNTNIIKNRRRKEKEKADHRAAHNFGKVLATFDVGYNTGNPL KVQINNKASQETIDNFNQDNDIDGLNGELWLDMDKYGRAYEIIYRDEDDVDYVDLCNVFE TFVVYDTTVKRRPILAVRYPKTKFTIDADKQYIQPIIYTKDKIITYAETTLATIKLSDPK EDSHDYKEVQITEFSPNRFRMGLYEDILSQIDLYDAGQSDTANYMTDLNDALLVISGDIE AAGLSTEDAIKQKEANILLLESGTDINGNKTSVNASYIYKQYDVNGVEAYKERVRKGIHE ISMIPDLTDTNFSGVQSGEAMKYKMFGFNQMTAVKQRLFKKSLVRRYRLLFNLKSSVSEI DNSDLKGLRIIFTPNLPKAILEELKTLIDSGAELSQETILGLASFVDDVQAELERVKNEN KPLDITDEEVAKTKVNQAKFLAKQSEKETEEE >gi|284795512|gb|ADDQ01000037.1| GENE 26 22022 - 23320 611 432 aa, chain - ## HITS:1 COG:SPy0972 KEGG:ns NR:ns ## COG: SPy0972 COG1783 # Protein_GI_number: 15674984 # Func_class: R General function prediction only # Function: Phage terminase large subunit # Organism: Streptococcus pyogenes M1 GAS # 9 429 11 421 429 138 28.0 2e-32 MSKKLSEFLPKAFHTTWKIALNSNILHVVEKGGRGSGKSSGIAHIIVQLIMRYPVNAVAI RFVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMKITYKPRGNYIVFRGAQNPERIKSL KDSRFPFAIAWIEELAEFKTEDDVKTITNSLLRGELADGLFYKFFYSYNPPKRRQSWVNK KYESSFQPENTFVHHSTYKDNPFIAQAFIEEVNATRAKNPKRAEWEYDGKAIGSGVVPFD NLRVIKGCITDEMVANFDNIRNGLDFGYATDPLAFVRWHYDKKKNGIYAIDEIYGVKISN RELAKKLHEKGYQNDEIFSDSAEPKSNAELVNEHGINHIKGVKKGPDSVEYGEQWLDDLD FICIDPLRTPNIAKEFENIDYQTDRDGNPKPRLEDKDNHTIDATRYGFNEDMWAKKKTKI SKNQRNKIKGMF >gi|284795512|gb|ADDQ01000037.1| GENE 27 23313 - 24116 645 267 aa, chain - ## HITS:1 COG:lin1733 KEGG:ns NR:ns ## COG: lin1733 COG5484 # Protein_GI_number: 16800801 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 238 1 253 294 156 42.0 3e-38 MARKRDPRRDQAKEIWLKSNGKKVLKELANELNVSDSQIRKWKSIDKWADELKGNVTNSK SNVTNKGGAPPGNKNAIGNKGNKTASPPKRNKNAVKTGEYETIFADMLSDEEKDIYSTMN DDPFFILEEEIRILKIRQYRMLKRIKDAEVDLNDEEVERLQQLRKVKEPSVIDGKMVTVK REVLKDVQVTRKTFRKLDDILAIEEALTRISNQLTKAIKQQNALLANDAKLQLLKVQTEK VKASLDATNGDMDMPVFIDDISGDEYE >gi|284795512|gb|ADDQ01000037.1| GENE 28 24303 - 24866 456 187 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256961401|ref|ZP_05565572.1| ## NR: gi|256961401|ref|ZP_05565572.1| predicted protein [Enterococcus faecalis Merz96] # 1 187 1 187 187 352 100.0 7e-96 MSFVSIAGNKKYINVMSDGLAVYQDGTREENWEKFVNYDNKRFIAFAGTVHYCQNVVTEA SKYLELPYNQWVNRIKEYVSNMPYSQETGKAIICVGGKDGTLKFSSFSNKPGQNFYDFEL VDDNIHYVFLSNMDEEDLLDKKFMEFVKRYRSAKSRDVLLAQRDLNNYVSDLNPNTVNKN TSYFVLK >gi|284795512|gb|ADDQ01000037.1| GENE 29 24893 - 24973 74 26 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MITSGTLKVEEIKKSNTMKSTQPKVK >gi|284795512|gb|ADDQ01000037.1| GENE 30 25152 - 25217 63 21 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIFNQVHAGSTPVTPISGKTT >gi|284795512|gb|ADDQ01000037.1| GENE 31 25307 - 25891 340 194 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293383716|ref|ZP_06629624.1| ## NR: gi|293383716|ref|ZP_06629624.1| conserved hypothetical protein [Enterococcus faecalis R712] # 1 194 14 207 207 330 100.0 2e-89 MRTIQKTLFYMSSFIPLYLLLIVQNFKFRNESGKFSWQTIFDQINFSNKIITLFWIGLIV MIILSLFGCVIFFKIYGAKEGRNGSISDAEFVREDTMGYIVTYIIPLLSMDITSLRSLVV NLLLFIIIGTFYVKNDQIFMNPLYNLFGYNIFSAESGIYITKISKQKLKLFAKRDVKVKK INIMGDIYVLKENE >gi|284795512|gb|ADDQ01000037.1| GENE 32 25914 - 26828 638 304 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256961399|ref|ZP_05565570.1| ## NR: gi|256961399|ref|ZP_05565570.1| predicted protein [Enterococcus faecalis Merz96] # 1 304 4 307 307 534 100.0 1e-150 MNIGNLRNFISNVEADDNDSVEMKMIQKIGNGIWSHTPQLTIAMREELKVFYTEILNNNF FDLEQSEYNPNIVIEGSLQVSDLTNAHINEVLAEIDLEENCNDDMGNVDLDKINYYRFKF NYNGNSLYIFRRFTKMKKIRNGILGRFQDNTFRKIETDDFFGIDRDIDILLFDNEALIVN RFALQTIFKLNDYFIERATTALSELEEENVLVNFEDFKNDCLNDKLAARRMTKIINTEGR LEGFLQNTRNLPEVIEHFDLEIELNDNNQIIYNGSKEARSQILFCISDAYYQSLILQRLG EDPS >gi|284795512|gb|ADDQ01000037.1| GENE 33 27073 - 27192 65 39 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293383718|ref|ZP_06629626.1| ## NR: gi|293383718|ref|ZP_06629626.1| conserved hypothetical protein [Enterococcus faecalis R712] # 1 39 1 39 39 70 100.0 4e-11 VFWRKVGGFYTNLSANIVISKVKEMDTLHNAFWFSHRLI Prediction of potential genes in microbial genomes Time: Sun May 15 12:51:05 2011 Seq name: gi|284795511|gb|ADDQ01000038.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont79.1, whole genome shotgun sequence Length of sequence - 130312 bp Number of predicted genes - 123, with homology - 122 Number of transcription units - 63, operones - 34 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 56 - 1066 1030 ## COG0524 Sugar kinases, ribokinase family + Term 1068 - 1131 17.0 + Prom 1075 - 1134 6.9 2 2 Op 1 . + CDS 1160 - 2188 932 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 3 2 Op 2 . + CDS 2185 - 2631 592 ## COG1671 Uncharacterized protein conserved in bacteria + Prom 2655 - 2714 7.0 4 3 Op 1 6/0.056 + CDS 2772 - 3842 1291 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes 5 3 Op 2 2/0.056 + CDS 3921 - 5294 1671 ## COG0770 UDP-N-acetylmuramyl pentapeptide synthase + Term 5423 - 5455 1.1 + Prom 5354 - 5413 4.5 6 4 Tu 1 . + CDS 5597 - 7144 2031 ## COG0513 Superfamily II DNA and RNA helicases + Term 7151 - 7200 12.1 + Prom 7676 - 7735 9.4 7 5 Op 1 5/0.056 + CDS 7776 - 8129 449 ## COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) 8 5 Op 2 . + CDS 8159 - 9274 1240 ## COG0787 Alanine racemase 9 5 Op 3 . + CDS 9290 - 9667 421 ## COG2337 Growth inhibitor + Term 9754 - 9813 11.5 + Prom 9789 - 9848 10.4 10 6 Op 1 . + CDS 9986 - 10681 735 ## EF0851 hypothetical protein 11 6 Op 2 . + CDS 10706 - 12001 1531 ## EF0852 hypothetical protein 12 6 Op 3 . + CDS 12006 - 12308 140 ## EF0853 hypothetical protein + Prom 12310 - 12369 2.8 13 7 Tu 1 . + CDS 12541 - 13116 532 ## COG0681 Signal peptidase I + Term 13120 - 13167 -0.9 - Term 13106 - 13155 1.1 14 8 Tu 1 . - CDS 13170 - 14648 1233 ## EF0855 hypothetical protein - Prom 14751 - 14810 10.0 + Prom 14690 - 14749 11.7 15 9 Op 1 . + CDS 14822 - 15574 819 ## COG2365 Protein tyrosine/serine phosphatase 16 9 Op 2 . + CDS 15653 - 15883 407 ## EF0857 hypothetical protein 17 9 Op 3 . + CDS 15917 - 18703 2926 ## COG1511 Predicted membrane protein + Term 18708 - 18759 14.0 + Prom 18833 - 18892 11.5 18 10 Op 1 . + CDS 18924 - 20093 1152 ## COG0053 Predicted Co/Zn/Cd cation transporters + Term 20120 - 20169 2.0 + Prom 20222 - 20281 7.2 19 10 Op 2 . + CDS 20392 - 22215 1648 ## COG0531 Amino acid transporters + Term 22222 - 22257 5.1 - Term 22209 - 22244 5.1 20 11 Tu 1 . - CDS 22250 - 22714 263 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Term 22723 - 22774 6.6 21 12 Op 1 13/0.056 - CDS 22786 - 23448 917 ## COG1174 ABC-type proline/glycine betaine transport systems, permease component 22 12 Op 2 13/0.056 - CDS 23452 - 24372 1214 ## COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) 23 12 Op 3 24/0.000 - CDS 24375 - 25010 862 ## COG1174 ABC-type proline/glycine betaine transport systems, permease component 24 12 Op 4 . - CDS 25014 - 26198 1371 ## COG1125 ABC-type proline/glycine betaine transport systems, ATPase components - Prom 26332 - 26391 7.4 - Term 26759 - 26809 4.4 25 13 Tu 1 . - CDS 26834 - 27724 1007 ## COG0346 Lactoylglutathione lyase and related lyases - Prom 27762 - 27821 8.3 + Prom 27705 - 27764 9.9 26 14 Tu 1 . + CDS 27890 - 28921 1186 ## COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) + Term 29055 - 29096 -0.3 - Term 29149 - 29195 10.5 27 15 Tu 1 . - CDS 29267 - 29515 271 ## COG1476 Predicted transcriptional regulators - Prom 29554 - 29613 7.9 + Prom 30098 - 30157 11.3 28 16 Tu 1 . + CDS 30395 - 33040 3160 ## COG0474 Cation transport ATPase + Term 33099 - 33144 17.1 + Prom 33129 - 33188 8.3 29 17 Tu 1 . + CDS 33374 - 35380 1918 ## COG3158 K+ transporter + Term 35438 - 35491 1.3 - Term 35389 - 35437 1.1 30 18 Tu 1 . - CDS 35450 - 36148 618 ## EF0873 Cro/CI family transcriptional regulator - Prom 36223 - 36282 6.7 31 19 Tu 1 . + CDS 36460 - 38418 2116 ## COG2217 Cation transport ATPase + Term 38432 - 38480 10.2 + Prom 38460 - 38519 4.6 32 20 Op 1 . + CDS 38542 - 39966 673 ## EF0876 hypothetical protein 33 20 Op 2 . + CDS 40035 - 40946 1104 ## COG4989 Predicted oxidoreductase + Term 40996 - 41049 11.6 + Prom 41043 - 41102 7.5 34 21 Op 1 4/0.056 + CDS 41134 - 43782 3256 ## COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains + Term 43825 - 43870 4.1 35 21 Op 2 4/0.056 + CDS 43882 - 44724 1025 ## COG0266 Formamidopyrimidine-DNA glycosylase 36 21 Op 3 1/0.111 + CDS 44721 - 45320 703 ## COG0237 Dephospho-CoA kinase + Prom 45323 - 45382 7.0 37 22 Op 1 6/0.056 + CDS 45500 - 45982 510 ## COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains 38 22 Op 2 8/0.056 + CDS 45998 - 47407 1633 ## COG3611 Replication initiation/membrane attachment protein 39 22 Op 3 . + CDS 47407 - 48336 1020 ## COG1484 DNA replication protein + Term 48338 - 48376 -0.9 + Prom 48374 - 48433 4.8 40 23 Op 1 . + CDS 48523 - 49626 1013 ## EF0884 hypothetical protein 41 23 Op 2 . + CDS 49640 - 51160 1142 ## EF0885 hypothetical protein 42 23 Op 3 2/0.056 + CDS 51150 - 52733 1331 ## COG5298 Uncharacterized protein conserved in bacteria 43 23 Op 4 . + CDS 52730 - 53992 1137 ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis 44 23 Op 5 . + CDS 54007 - 56073 2171 ## EF0888 hypothetical protein 45 23 Op 6 . + CDS 56075 - 56503 501 ## COG2199 FOG: GGDEF domain 46 23 Op 7 . + CDS 56573 - 56923 384 ## EF0889 hypothetical protein 47 23 Op 8 . + CDS 56939 - 57250 445 ## EF0890 hypothetical protein + Term 57254 - 57304 15.6 - Term 57240 - 57292 15.0 48 24 Op 1 1/0.111 - CDS 57297 - 58451 1296 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 49 24 Op 2 16/0.000 - CDS 58467 - 59189 634 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 50 24 Op 3 . - CDS 59182 - 60645 1645 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - Prom 60665 - 60724 10.1 + Prom 60618 - 60677 7.9 51 25 Op 1 . + CDS 60700 - 60819 71 ## 52 25 Op 2 . + CDS 60834 - 61922 1426 ## COG0371 Glycerol dehydrogenase and related enzymes + Term 61931 - 61981 7.0 + Prom 61990 - 62049 6.3 53 26 Op 1 15/0.000 + CDS 62081 - 63226 1251 ## COG0343 Queuine/archaeosine tRNA-ribosyltransferase + Prom 63229 - 63288 3.7 54 26 Op 2 . + CDS 63308 - 63685 578 ## COG1862 Preprotein translocase subunit YajC + Term 63825 - 63879 2.1 + Prom 63855 - 63914 7.1 55 27 Op 1 . + CDS 63965 - 64252 264 ## EF0899 hypothetical protein + Prom 64302 - 64361 7.7 56 27 Op 2 . + CDS 64412 - 67009 3226 ## COG1454 Alcohol dehydrogenase, class IV + Term 67021 - 67069 14.7 - Term 67013 - 67052 9.3 57 28 Op 1 3/0.056 - CDS 67054 - 68097 1034 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases 58 28 Op 2 5/0.056 - CDS 68081 - 69187 1123 ## COG1577 Mevalonate kinase 59 28 Op 3 5/0.056 - CDS 69190 - 70185 1051 ## COG3407 Mevalonate pyrophosphate decarboxylase 60 28 Op 4 . - CDS 70185 - 71129 923 ## COG1577 Mevalonate kinase - Prom 71272 - 71331 5.7 - Term 71228 - 71262 -0.3 61 29 Op 1 . - CDS 71399 - 72034 429 ## COG1357 Uncharacterized low-complexity proteins 62 29 Op 2 . - CDS 72031 - 73104 1054 ## COG1289 Predicted membrane protein - Prom 73210 - 73269 7.5 + Prom 73248 - 73307 9.4 63 30 Tu 1 . + CDS 73348 - 75018 2039 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Term 75049 - 75093 1.3 - Term 75035 - 75083 3.0 64 31 Tu 1 . - CDS 75097 - 75447 305 ## EF0908 hypothetical protein - Prom 75480 - 75539 6.1 + Prom 75374 - 75433 4.0 65 32 Op 1 49/0.000 + CDS 75538 - 76479 244 ## PROTEIN SUPPORTED gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 66 32 Op 2 44/0.000 + CDS 76479 - 77531 1091 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 67 32 Op 3 44/0.000 + CDS 77547 - 78599 1416 ## COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 68 32 Op 4 . + CDS 78599 - 79555 1283 ## COG4608 ABC-type oligopeptide transport system, ATPase component 69 32 Op 5 . + CDS 79596 - 80666 780 ## COG0675 Transposase and inactivated derivatives + Term 80792 - 80834 0.1 + Prom 80816 - 80875 12.6 70 33 Op 1 36/0.000 + CDS 81088 - 81588 422 ## PROTEIN SUPPORTED gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 + Term 81639 - 81672 -0.9 + Prom 81609 - 81668 1.6 71 33 Op 2 46/0.000 + CDS 81702 - 81902 340 ## PROTEIN SUPPORTED gi|29375499|ref|NP_814653.1| 50S ribosomal protein L35 72 33 Op 3 . + CDS 81963 - 82322 595 ## PROTEIN SUPPORTED gi|29375500|ref|NP_814654.1| 50S ribosomal protein L20 + Term 82340 - 82375 7.1 - Term 82287 - 82340 3.2 73 34 Tu 1 . - CDS 82370 - 82720 613 ## PROTEIN SUPPORTED gi|238856926|ref|ZP_04647185.1| 30S ribosomal protein S8 - Prom 82754 - 82813 2.8 + Prom 82732 - 82791 4.2 74 35 Tu 1 . + CDS 82818 - 83177 563 ## COG3759 Predicted membrane protein + Term 83197 - 83254 4.8 + Prom 83224 - 83283 9.2 75 36 Op 1 . + CDS 83305 - 83739 597 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 76 36 Op 2 . + CDS 83757 - 84272 195 ## PROTEIN SUPPORTED gi|148360238|ref|YP_001251445.1| nucleotidyltransferase PLUS glutamate rich protein GrpB PLUS ribosomal protein alanine acetyltransferase - Term 84036 - 84085 2.2 77 37 Tu 1 . - CDS 84288 - 85463 1143 ## COG0659 Sulfate permease and related transporters (MFS superfamily) - Prom 85491 - 85550 7.8 - Term 85509 - 85556 13.1 78 38 Tu 1 . - CDS 85557 - 86585 901 ## COG2855 Predicted membrane protein - Prom 86611 - 86670 6.8 + Prom 86610 - 86669 8.2 79 39 Op 1 2/0.056 + CDS 86728 - 87528 649 ## COG0583 Transcriptional regulator 80 39 Op 2 . + CDS 87593 - 88465 765 ## COG3865 Uncharacterized protein conserved in bacteria + Prom 88631 - 88690 9.3 81 40 Op 1 . + CDS 88740 - 88964 282 ## EF0925 hypothetical protein + Prom 88966 - 89025 3.0 82 40 Op 2 40/0.000 + CDS 89053 - 89727 763 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 83 40 Op 3 . + CDS 89741 - 90766 911 ## COG0642 Signal transduction histidine kinase + Term 90773 - 90816 0.5 + Prom 90785 - 90844 7.7 84 41 Op 1 . + CDS 90914 - 91777 1093 ## COG4975 Putative glucose uptake permease 85 41 Op 2 2/0.056 + CDS 91818 - 93209 1442 ## COG0531 Amino acid transporters + Term 93218 - 93278 13.2 + Prom 93289 - 93348 5.2 86 42 Op 1 . + CDS 93397 - 95406 2357 ## COG0143 Methionyl-tRNA synthetase + Term 95415 - 95472 16.0 + Prom 95420 - 95479 5.1 87 42 Op 2 . + CDS 95506 - 95781 138 ## EF0931 hypothetical protein + Term 95792 - 95847 13.3 - Term 95776 - 95837 12.4 88 43 Op 1 . - CDS 95840 - 96445 560 ## EF0932 hypothetical protein - Term 96462 - 96524 16.1 89 43 Op 2 . - CDS 96566 - 98764 2314 ## COG3973 Superfamily I DNA and RNA helicases - Prom 98790 - 98849 5.0 + Prom 98765 - 98824 4.3 90 44 Op 1 3/0.056 + CDS 98923 - 99693 997 ## COG0084 Mg-dependent DNase 91 44 Op 2 7/0.056 + CDS 99702 - 100274 863 ## COG1658 Small primase-like proteins (Toprim domain) 92 44 Op 3 . + CDS 100293 - 101180 921 ## COG0030 Dimethyladenosine transferase (rRNA methylation) + Term 101185 - 101234 13.1 + Prom 101209 - 101268 5.0 93 45 Tu 1 . + CDS 101308 - 101925 685 ## EF0937 hypothetical protein + Term 101936 - 101980 15.5 - Term 101924 - 101968 15.5 94 46 Tu 1 . - CDS 101975 - 103078 1487 ## COG3839 ABC-type sugar transport systems, ATPase components - Prom 103110 - 103169 6.3 + Prom 102992 - 103051 7.6 95 47 Op 1 . + CDS 103264 - 103686 501 ## COG1803 Methylglyoxal synthase + Prom 103700 - 103759 6.8 96 47 Op 2 . + CDS 103960 - 104499 586 ## EF0940 hypothetical protein + Term 104514 - 104558 7.6 - Term 104502 - 104546 7.6 97 48 Op 1 35/0.000 - CDS 104551 - 106317 212 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 98 48 Op 2 . - CDS 106307 - 108034 182 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 - Prom 108174 - 108233 9.2 + Prom 108070 - 108129 3.5 99 49 Tu 1 . + CDS 108160 - 108927 591 ## COG4905 Predicted membrane protein + Prom 109058 - 109117 10.5 100 50 Op 1 . + CDS 109188 - 110396 1390 ## COG3584 Uncharacterized protein conserved in bacteria + Prom 110398 - 110457 3.5 101 50 Op 2 . + CDS 110493 - 111056 887 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 111060 - 111106 12.3 - Term 111040 - 111101 19.3 102 51 Op 1 . - CDS 111102 - 111626 445 ## COG4894 Uncharacterized conserved protein 103 51 Op 2 . - CDS 111678 - 112547 1053 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 112735 - 112794 5.4 + Prom 112602 - 112661 3.8 104 52 Tu 1 . + CDS 112681 - 113361 811 ## COG0692 Uracil DNA glycosylase + Prom 113431 - 113490 5.1 105 53 Tu 1 . + CDS 113517 - 114500 1178 ## COG0280 Phosphotransacetylase + Term 114536 - 114584 5.5 + Prom 114568 - 114627 8.5 106 54 Op 1 3/0.056 + CDS 114657 - 115136 608 ## COG0802 Predicted ATPase or kinase 107 54 Op 2 . + CDS 115129 - 115650 216 ## PROTEIN SUPPORTED gi|229236145|ref|ZP_04360568.1| acetyltransferase, ribosomal protein N-acetylase + Term 115684 - 115742 11.3 + Prom 115713 - 115772 12.4 108 55 Tu 1 . + CDS 115820 - 116029 289 ## EF0953 hypothetical protein + Term 116062 - 116114 16.7 - Term 116054 - 116098 12.4 109 56 Op 1 1/0.111 - CDS 116103 - 117113 1041 ## COG1609 Transcriptional regulators 110 56 Op 2 . - CDS 117137 - 118144 332 ## PROTEIN SUPPORTED gi|15900011|ref|NP_344615.1| aldose 1-epimerase 111 56 Op 3 11/0.056 - CDS 118134 - 118802 707 ## COG0637 Predicted phosphatase/phosphohexomutase 112 56 Op 4 . - CDS 118795 - 121089 2158 ## COG1554 Trehalose and maltose hydrolases (possible phosphorylases) - Prom 121117 - 121176 7.8 + Prom 121193 - 121252 6.3 113 57 Tu 1 . + CDS 121370 - 123538 2609 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Term 123576 - 123635 7.2 + Prom 123574 - 123633 5.2 114 58 Tu 1 . + CDS 123753 - 124577 801 ## COG3568 Metal-dependent hydrolase + Term 124578 - 124619 10.6 - Term 124563 - 124610 14.5 115 59 Tu 1 . - CDS 124637 - 125452 1050 ## COG0345 Pyrroline-5-carboxylate reductase - Prom 125500 - 125559 5.9 116 60 Op 1 . + CDS 125579 - 126529 667 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain 117 60 Op 2 . + CDS 126522 - 126821 386 ## EF0963 hypothetical protein 118 60 Op 3 . + CDS 126838 - 127128 346 ## COG1694 Predicted pyrophosphatase + Term 127161 - 127219 4.1 119 61 Op 1 . - CDS 127288 - 128001 385 ## EF0965 hypothetical protein 120 61 Op 2 . - CDS 128006 - 128638 462 ## COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components 121 61 Op 3 . - CDS 128649 - 128798 91 ## gi|257086304|ref|ZP_05580665.1| conserved hypothetical protein - Prom 128949 - 129008 10.5 + Prom 129062 - 129121 5.0 122 62 Tu 1 . + CDS 129146 - 129922 746 ## COG0789 Predicted transcriptional regulators + Term 129959 - 130012 13.2 + Prom 129943 - 130002 5.3 123 63 Tu 1 . + CDS 130064 - 130264 75 ## EF0967 hypothetical protein Predicted protein(s) >gi|284795511|gb|ADDQ01000038.1| GENE 1 56 - 1066 1030 336 aa, chain + ## HITS:1 COG:TM0067 KEGG:ns NR:ns ## COG: TM0067 COG0524 # Protein_GI_number: 15642842 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Thermotoga maritima # 1 323 1 325 339 156 31.0 6e-38 MKIAAFGEVMLRFTPPEYLMLEQTEQLRMNFVGTGVNLLANLAHFQLETTLITKLPANRL GEAGKAALRKLGISDQWVGEKGDHIGSFFAEMGYGIRPTQVTYQNRHQSAFGISEAKDYD FEAFLAEVDMVHICGISLSLTEKTRDAALILAQKAHACQKKVCFDFNYRPSLNTANSALF MRQQYERILPYCDIVFGSRRDLVELLGFIPREDLEGEAQETELIQRFMSQYNLEWFAGTT RSHSQNQNYLSGYLYTQNEYQQSEKRPLLNLDRIGAGDAYAAGILYGYSQNWSLEKAVTF ATVNGVLAHTIQGDIPLTTVKQVNHVLEHPNIDLIR >gi|284795511|gb|ADDQ01000038.1| GENE 2 1160 - 2188 932 342 aa, chain + ## HITS:1 COG:aq_1026 KEGG:ns NR:ns ## COG: aq_1026 COG0187 # Protein_GI_number: 15606321 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Aquifex aeolicus # 16 328 23 368 792 85 23.0 2e-16 MSVAHLLTVLENDEFIERIQKRPEAFIGTTGLVGLENLLVQTINGLLEFFIEKNQGKIAI QLSRQQISFQVSSTRPLVFEQKQVDLEPPFLYLSVLQAFSKQVGISIDQEKQRTIFIYHQ GQLKKRLLLPIEETQERIEVLFWPDTQIFGTESLSYMRVLQQCQQIAMLNPGLKILLTQE EEQKNLCYYPKGLSNYLFEKDNPLTRKAAPIIQAKQTELALVQFILSKNHAPQVQKTFVN GHYPSLGGTHYEGFLDGVVAAFNQFLEEQHYSLSVTADSFLAEFDFVLAITIPKPRYTDA TKTILRNTELYEVVKEVVFDELQHYFQRHPKWLEQGRSEGNE >gi|284795511|gb|ADDQ01000038.1| GENE 3 2185 - 2631 592 148 aa, chain + ## HITS:1 COG:SA0636 KEGG:ns NR:ns ## COG: SA0636 COG1671 # Protein_GI_number: 15926358 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 3 146 4 147 152 141 47.0 5e-34 MKIFVDGDGSPVKETVIEVAVEKALDVVIVTSVDHYSLKDYPENVSFVYVDKGADAADFK IVQLIKKGDLLITQDYGLASLVLPKGVSVLHQLGYQYTKENIDGLLEQRYFSGQIRRKGG RTKGPKPFTDQDRITFKQALIELVERSL >gi|284795511|gb|ADDQ01000038.1| GENE 4 2772 - 3842 1291 356 aa, chain + ## HITS:1 COG:SP1671 KEGG:ns NR:ns ## COG: SP1671 COG1181 # Protein_GI_number: 15901506 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Streptococcus pneumoniae TIGR4 # 3 351 5 343 347 387 55.0 1e-107 MKIILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKE VLHLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVG AGVLASANAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKP ANMGSSVGISKAENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGE VVKDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS KNELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLALNRFKQRQEFYNN >gi|284795511|gb|ADDQ01000038.1| GENE 5 3921 - 5294 1671 457 aa, chain + ## HITS:1 COG:SPy1420 KEGG:ns NR:ns ## COG: SPy1420 COG0770 # Protein_GI_number: 15675337 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide synthase # Organism: Streptococcus pyogenes M1 GAS # 1 455 1 453 463 424 49.0 1e-118 MKLTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGENDGHRFIESAMA NGCQAAFWGQDLVDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKNTTKD LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKVTQQVI TFGFSQESQLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNALIAIGIGRYFQLTD SEIQKGLATAELTKNRTEWLKAANGAEILSDVYNANPTAMGLVLDSFSKMSKVGKRIAVL GDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAPANIHSFKKEEK NELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK >gi|284795511|gb|ADDQ01000038.1| GENE 6 5597 - 7144 2031 515 aa, chain + ## HITS:1 COG:lin0859 KEGG:ns NR:ns ## COG: lin0859 COG0513 # Protein_GI_number: 16799933 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Listeria innocua # 2 440 3 440 516 592 69.0 1e-169 MKFKELGLAPELLSAVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML NKIDADNRVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLKDRP HIVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQTLLF SATMPPAIKNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLDVQTPE LTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAA RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYLHVIENLTKK RMTPLRPPTEKEAFKGQLSAAVETIESDLEENGLDKYLESAEALLEKYSATDLAALLLKT VAKDPADAVPVKITPERPLPSNKKGFNKNGRGGGGGNNRNRNRGGNGKGGSYRGNKNHKD GDRNYKNSDRKNKDQRGGKRHNDKKRGFVIRENAK >gi|284795511|gb|ADDQ01000038.1| GENE 7 7776 - 8129 449 117 aa, chain + ## HITS:1 COG:SP1699 KEGG:ns NR:ns ## COG: SP1699 COG0736 # Protein_GI_number: 15901533 # Func_class: I Lipid transport and metabolism # Function: Phosphopantetheinyl transferase (holo-ACP synthase) # Organism: Streptococcus pneumoniae TIGR4 # 1 115 1 115 120 119 51.0 2e-27 MIKGIGIDAVELSRIKPIVEKQGSFIQRVLTPNELTLFEKLSTKRQIEFLAGRFACKEAF SKAWGTGIGKVGLQDIEVLTEKTGAPYVANSPHNGKVFVSITHTDTMAIAQIVLESE >gi|284795511|gb|ADDQ01000038.1| GENE 8 8159 - 9274 1240 371 aa, chain + ## HITS:1 COG:lin0885 KEGG:ns NR:ns ## COG: lin0885 COG0787 # Protein_GI_number: 16799958 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Listeria innocua # 1 370 1 366 368 369 48.0 1e-102 MVVGWHRPTRLHIDTQAITENVQNECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGA TGFCVALLDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLT PKSNTPLRVHLKVDTGMGRIGFLNPEETKQAVRFVQFHKEFLWEGIFTHFSTADEIDTSY FEKQAGRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPS YALKPALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGFTVL VNGKRCEIVGRVCMDQCMIRLAEEVPVGSVVTLVGKDGNEENTLQMVAEKLETIHYEVAC TFSQRIPREYN >gi|284795511|gb|ADDQ01000038.1| GENE 9 9290 - 9667 421 125 aa, chain + ## HITS:1 COG:BH0522 KEGG:ns NR:ns ## COG: BH0522 COG2337 # Protein_GI_number: 15613085 # Func_class: T Signal transduction mechanisms # Function: Growth inhibitor # Organism: Bacillus halodurans # 1 112 2 113 116 154 69.0 3e-38 MVKRGDIYFADLSPVVGSEQGGVRPVLVVQNNLGNHFSPTIIVAAITAKMAKPKLPTHIG INSDETGIEKDSVILLEQIRTIDKGRLKEKVCHLRLDIMEEVDRALGISVGLSSDSAPAK ANSAT >gi|284795511|gb|ADDQ01000038.1| GENE 10 9986 - 10681 735 231 aa, chain + ## HITS:1 COG:no KEGG:EF0851 NR:ns ## KEGG: EF0851 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 231 1 231 231 382 99.0 1e-105 MMIVVLLMSSCLFLFVSYQLYLRLLVEKLDSEDRTLKRKINFYKYQKNSRLMIYLLFSVC LLSVLLLGIVYTYYQLNQRNIRMEQRIERLAQGQATQGEKIKKQAIKKTALNQFPWKQAV SAESAAVLTNYELQLAREWRPYLGETSITMIRSEKTQTLTLSVFSVGLSYHEFQTGQDNI VALIAALNSVKEITMIDFNFTYRDQEQTLVKSIDTYARETLETNLEPVVIS >gi|284795511|gb|ADDQ01000038.1| GENE 11 10706 - 12001 1531 431 aa, chain + ## HITS:1 COG:no KEGG:EF0852 NR:ns ## KEGG: EF0852 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 431 1 431 431 403 98.0 1e-111 MTKRRLIKKIKDISDDTLEKEVFFQPGFEPEKIISGIKPEQQEKEMATLRERLAYYQKKE TAFKKLQEENEQLKNQQETEKQALEEKNQALLETLNQKEHEIFELEEQLETNSENTTEAT TLQTNLQNAEKQLTTVHNQMERLESELTQQVAELEKESAEQQQHIQTLHNQLAEEKGKLE KKGDITGMEKQVETLTTELEESTMTQQALQEQIEKLTVQLQKVEAEKQTLQEAAQQEVIV QQRMEELKNELQNSLQQKNEAEVKLGRLQGVNDKHLAEKQVYEGELAALRKEVEAKEDNL EQVQKELKTLQAVSKNIEPSSEQLTELLRAKQQINDLLMKNQQLQEEALKSQQEIGEVMV SAKKEANRIVNEAKVEAKHLINSAELEMLNIGNRAKSISNEVEASKVEVLEIYRELEERL TKLTRLEQDNY >gi|284795511|gb|ADDQ01000038.1| GENE 12 12006 - 12308 140 100 aa, chain + ## HITS:1 COG:no KEGG:EF0853 NR:ns ## KEGG: EF0853 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 100 9 108 108 152 96.0 3e-36 MVSKKLMGARKLHCLGVLFLAVTLSGSAERLQAAVVSKEEQSLRQPLIRKNIVTEKSEYL VQANQSIWELAQDAQKPLNQFMKENQLRSSYIKKGTQLVK >gi|284795511|gb|ADDQ01000038.1| GENE 13 12541 - 13116 532 191 aa, chain + ## HITS:1 COG:lin1309 KEGG:ns NR:ns ## COG: lin1309 COG0681 # Protein_GI_number: 16800377 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Listeria innocua # 4 178 7 185 189 91 30.0 9e-19 MTAEEIKKKRQAYQKKQRIQVVKFFMPAILFAIFVFFFVLKTSSYPIAGQSMKPTLNAGE RVLVQRTKQVTRYDVIAFKAPLANKGTYVKRIIGVPGDRIWVNEGKVYLSEGPTASDNEA LPENTSRFDLSEEAAAQLRLFQKIPAGHYFVLGDNRTHSSDSRTFGFVEIQAIEGIVVFK MAPFKEIGKVK >gi|284795511|gb|ADDQ01000038.1| GENE 14 13170 - 14648 1233 492 aa, chain - ## HITS:1 COG:no KEGG:EF0855 NR:ns ## KEGG: EF0855 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 492 1 492 492 847 98.0 0 MLKRDFLEKPYDYMNDILLFLYNNKGQATRNELVDFFNISLPTLNEYLSFLEQFLKEEQL QESLTVTVLGDTLYLNKAPTFSMKAMIMLFLNKSIKFHMVQQLFHKNKINGGYFQQNYAI SSATYYRKIVELNDLLNEFNLCIKRGKLIGEEKQIRFFFFNFFWFIFEEKTDLEKELANQ YLGLIEILQEIPRITFDHTEILQIKLWMKISFRRMVLEPLPTISPHDVQLDRPLFEEINL SIHTYMKRIDRPYTINEAYMFYDFFCSMHNYSANAAFAFRLAKQQRIEKTYLNEMNRVIL TYLKARGYLSHYVLPIRLLYIENLLFQLHAQLYYFSGFILPFDYWTIQSLLKVLRHPFSE SEVYELVEIATTNFATKVTASKYQNQFTEINYTLILNHIAELNEKKITIGVYHSLSSAYS ELVAQKIQQSIAGKYPLKIEPYNAENHYDLLLMNTNNEQLVAQYDHYYIFSDISNRYDLQ SIEKIIQLLLGK >gi|284795511|gb|ADDQ01000038.1| GENE 15 14822 - 15574 819 250 aa, chain + ## HITS:1 COG:lin1914 KEGG:ns NR:ns ## COG: lin1914 COG2365 # Protein_GI_number: 16800980 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 1 247 48 296 298 155 32.0 7e-38 MNSVVNFRDIGEFPTQQGTSVKTGHFFRSGELVNVAQADQQKLVEDYQIKRIYDFRSAAE TQERPDDSIQGTNYLHIDILADIQAQTASLEGMLKTVGSPDAAMDMAYKEMVLSNSGRKG YQTFFENFLSYPQEAILFHCFAGKDRTGIGAALILSALGVEHSYILEDYLKTNEQRKTAN EQIIAQYQANGTPPAEIQQLETLLYVKKEYLATALQAIEKEFGSVEGYLKEGLGLPLSAK KDMLSLYTKS >gi|284795511|gb|ADDQ01000038.1| GENE 16 15653 - 15883 407 76 aa, chain + ## HITS:1 COG:no KEGG:EF0857 NR:ns ## KEGG: EF0857 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 76 1 76 76 97 100.0 1e-19 MKEGQEQFLTFILDRTKEDKKEKMQALLAEMFERQQTGKLDKMYLMTKAPKLLAYLKPEA IDEVKQVVSEFSKNMK >gi|284795511|gb|ADDQ01000038.1| GENE 17 15917 - 18703 2926 928 aa, chain + ## HITS:1 COG:L118462 KEGG:ns NR:ns ## COG: L118462 COG1511 # Protein_GI_number: 15673652 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 30 928 1 901 901 1236 69.0 0 MCRNIQAFVCYSLVFYAKVIQAQKKAGDFMKHIKNTWELFILDWKRIFKNPVATFLIVAL MIIPSLYAWFNIKALWDPYSNTGELPIAVYSDDQTATFQDKSVNIGDEVLKNLKKNKQLG WRFVDSKKELDKGVQSGKYFAGIYLPKDFSKDLLSFTSGDINKPKIEYSINEKINAIAPK ITSKGASSIQSQISEEFIKTASSTLIKTFNDIGYDIDKNMVSIQKVKSMILDTDANIGTI DTYAKQVTDLHGKMPELKEKLAKANDAMKYLPEVDALGEKIVELNGKMPSIKEQASVILT LQEKIPEIQNAGRQIAMIDEDFASVEQTMSEGIQEAKQGLEIIQQVQTALPDIRKLGDQA NDLGNVTLDGANKLQEALPSITNSVEVSIQSLKTISSNINSIAGQIDQLIADNELTPEER QQLGEIVTRFSESLEKQIAAANQLIETLTKLQEAAGNDSLAGPISRLEDLVKVLTELKKR VDGIDFNAISVDQLRETLKDIQDFSSTISDILLDIHPDEISNTVNTVTSKLIATIQNAQG QLNKAQQIDFEGLLSSTSQTVTNAISLLEKYQAEMPAIKQEIHDANTMLNGNMETIVNGI NRGADLYKNDLPVIQDKVSKAAAFMQNDYPGIRKDLTNTLKTVNEKMPDVEAALDKANEL IINDWPNIKTGLHKAANAIRKGEKEVDLGEILKLLKLDANKESDFFTQPVEVKEHAVYPI ANNGSASTPFYTALCLWVGAVLFSSVATTDVYLEGKDKKRFSKREQFSARMFTFIVMGIG QALIVTLGNYFALGVDVRNPAYSVWFAVLIAITFMIMVYVLVALFGNVGKGIAIIILVLS ISGGGGNYPIQVSGKFFQMINPFLPFTHAVNLLRESAGGIYWPNAWFAIWIMVGISVVFS IGGAILYPHLEHRSKKFAALAQKSHLFH >gi|284795511|gb|ADDQ01000038.1| GENE 18 18924 - 20093 1152 389 aa, chain + ## HITS:1 COG:CAC0606 KEGG:ns NR:ns ## COG: CAC0606 COG0053 # Protein_GI_number: 15893895 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted Co/Zn/Cd cation transporters # Organism: Clostridium acetobutylicum # 21 386 32 400 403 276 38.0 7e-74 MIQALLQRYEKKIERRKLEKRTAFGAFAGRIGLVSNLFLFVSKFMIGLLSGSVSIMADAI NSLSDTISSVLTLVGFYIAGKPADKEHPYGHERFEYISGMLVSLVITFIGFEFLTTSVDR ILHPESIKVTPILFAVLALSIGIKIWQGLFYKKVSAKIDSQALVASAKDSFNDVYTTLAV LVSAFIEGVTGLRIDGYIGFLIAAYIIYSGLQLIREFINELMGMRPSQTEIDEMKDVLSK METIVGYHDLLIHNYGPSQTFASVHIEIDDRWDLNKAHQTIDAIEAKFKEELDVNLVCHI DPVNLYDPTQQFVHQTIKKIIRSFDASLKVHDIRLVTHGEEPKILFDLVLPTESKLSEFE LGVEIQRQVYEKIGRYKVEITFDHTYLLQ >gi|284795511|gb|ADDQ01000038.1| GENE 19 20392 - 22215 1648 607 aa, chain + ## HITS:1 COG:lin2235 KEGG:ns NR:ns ## COG: lin2235 COG0531 # Protein_GI_number: 16801300 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Listeria innocua # 4 607 5 607 607 700 59.0 0 MADLKRLFIGKPLKSAENDEHKLSRFAALALLSSDALSSIAYGTEQIVVVLVTLSAAAIW YSLPIAAFVIILLISLTLSYRQIIHAYPHGGGAYVVSSENLGRNAGLLAGGSLLVDYMLT VAVSVSAGAEAIISAIPALYGHQVAISIGIVILITLMNLRGLRESASFLMLPVYSFIAII TLLIVVGLFKIVTGAQPLNATALPGAVVPGISIALVLRAFSSGSSSLTGVEAISNAVPFF KKPRAKNAAGTLALMATILGFFFVGITFINYWYGIVPKEEVTVLSQIGKAVFGQNILYYL LQFATALILAVAANTGFSAFPVLAYNLAKDKFMPHMYMDRGDRLGYSNGILTLAAGSIVL LLIFQGSTERLIPLYSIGVFIPFALSQSGMVVKWRKETKNWLPKSIANIVGAFISFAIIA ILFIYRLGDIWPFFIIMPVLIYAFYRVNTHYKNVAEQLRLEDGAQLHEFDGNTVIVLVGN VTKANVGALNYARSIGDYVVAMHVSMDENVEKEKEIQEEFKKHFPDVRLSIVHSSYRSLQ NPILRYVDLVSKNATKHNYSTTVLVPQFVPNKRWQNILHNQTSLRLRIRLAWRENIIVAT YSYHLKK >gi|284795511|gb|ADDQ01000038.1| GENE 20 22250 - 22714 263 154 aa, chain - ## HITS:1 COG:L69304 KEGG:ns NR:ns ## COG: L69304 COG0454 # Protein_GI_number: 15673990 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Lactococcus lactis # 6 149 4 148 152 100 37.0 8e-22 MSNHTIIDLNQQPHLIPSAAQWFSQKWQIPAEAYQASMQEMLTSENHVPHWWVCLNKQQD IVAGVGVIDNDFHHRADLTPNLCALYVEPTFRHQGLAGILLTTVGDFLANSGFKKLYLLT DHTTFYERYDWEFLTMVTTEEQSCARIYQKQLRQ >gi|284795511|gb|ADDQ01000038.1| GENE 21 22786 - 23448 917 220 aa, chain - ## HITS:1 COG:BS_opuCD KEGG:ns NR:ns ## COG: BS_opuCD COG1174 # Protein_GI_number: 16080433 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, permease component # Organism: Bacillus subtilis # 4 217 1 214 229 251 65.0 8e-67 MNNMNLFQQFIYYFQQNGGYVFQQFLRHFLISIYGVSFAAIVGIPIGIMISRKRSLANWI IRLANIIQTVPALAMLSILMLGMGLGVNTVVVTVFLYSLLPIIKNTYTGMIQVDRNILDV GKGMGMTKVQLLYMVELPLSVSVIMAGIRNALVVAIGITAIGAFVGAGGLGDIIIRGTNA TDGASIILVGALPTAFMAIITDWVLGIIERRLDPASKHSN >gi|284795511|gb|ADDQ01000038.1| GENE 22 23452 - 24372 1214 306 aa, chain - ## HITS:1 COG:BS_opuCC KEGG:ns NR:ns ## COG: BS_opuCC COG1732 # Protein_GI_number: 16080434 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) # Organism: Bacillus subtilis # 1 304 1 303 303 342 55.0 5e-94 MKKKLKLSLLFLSSLLLLAGCSLPGLASTSDDNTVAITGGITSEAQILGSIVADMVEHYT DKKTNVINNLATTTINHQAMLNGDASISAARYTGTDVTTTLGLPAEKDPKKAFNLVQSEF EKRYQQTWFPSYGFENTYVFLVTKETAEKYNLKTVSDLGKVADKLVAGVDTAWITREGDG YEGFKKEYNFQFKSILPMQIGLVYDAVNAGKMDVILGYSTDGRIGSYDLVMLKDDKRFFP PYDAAPVVSDKLLKETPEIKDVLNRLDGKISTKKMQELNYQADNDLIEPAVVAERFLKEN NYFEGE >gi|284795511|gb|ADDQ01000038.1| GENE 23 24375 - 25010 862 211 aa, chain - ## HITS:1 COG:lin1466 KEGG:ns NR:ns ## COG: lin1466 COG1174 # Protein_GI_number: 16800534 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, permease component # Organism: Listeria innocua # 3 211 6 214 218 244 65.0 1e-64 MSSFFQEYGSEMISKSIEHIYISFFALLLGVAIAVPVGVWLTRLPKVANIVIGLTSALQT VPSLALLALMIPIFGVGKTPAIIALFIYSLLPILRNTYIGMKNVDENYRDVAKGMGMTNL QSIFSVELPIAMPTIMAGIRLAAVYVIAWATLASYIGAGGLGDMIFSGLNNYQPELIFGG TIPVTILALLADVLLGLLENRLTPKALREGE >gi|284795511|gb|ADDQ01000038.1| GENE 24 25014 - 26198 1371 394 aa, chain - ## HITS:1 COG:lin1467 KEGG:ns NR:ns ## COG: lin1467 COG1125 # Protein_GI_number: 16800535 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, ATPase components # Organism: Listeria innocua # 1 393 1 392 397 488 65.0 1e-138 MIEFQHVSKFYKGGKVAVDDINLSFDKGEFICFIGTSGSGKTTSMRMLNRMTDPSKGKIL IDGQDIQKINPVELRRQIGYVIQNIGLMPHMTIRENIVLVPKLLKVPVEERNKIAEKMID LVELPREMLDRYPNELSGGQQQRIGVVRALAANQDIILMDEPFGALDPITRDSLQDLVKD LQERLGKTIVFVTHDMDEALKLANKIAIMSEGKVIQFDTPDNILRHPANEFVEELIGEDR LLQAKPDFTTVDEVMLNSAITITPEKSLQEAIKLMREKRVDTLLVVDNSHVLKGFIDVET LDQQRGKASSVGDILNKDVFFVQKTALLRDALQRILKRGLKYVPVVDEQKRVVGILTRAS LVDIVYDVIWGDETTISEAVEAKQSESETDKEEA >gi|284795511|gb|ADDQ01000038.1| GENE 25 26834 - 27724 1007 296 aa, chain - ## HITS:1 COG:lin0752 KEGG:ns NR:ns ## COG: lin0752 COG0346 # Protein_GI_number: 16799826 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Listeria innocua # 6 296 6 295 296 276 48.0 3e-74 MHAQFHHVSLLARHGQENQSFYTKLLGLRFVKNTVNQDNNRMPHYFYGDYQGTPGSLVTF FIVPLLGNRYEEKNYLATIGLKIPQNSLSFWEQRLTENKIPFNKKEKSLHFSDPDDTHII LTEVPENPLKETLVVSNDIPAAVQIIGLASTEFHVPDSEKTLAFFETFLGWQAVGNTIIL SETESFSVHQTTSDKTSRMGRGSMDHIAFSVADDEALQELHTRALAQGWEIEMYVSRGYF KSLYIREPGGNRVEFATLTPGFTLDEPLEHLGETLALPPFLEPKRTAIEANLYKDM >gi|284795511|gb|ADDQ01000038.1| GENE 26 27890 - 28921 1186 343 aa, chain + ## HITS:1 COG:SP1416 KEGG:ns NR:ns ## COG: SP1416 COG0809 # Protein_GI_number: 15901270 # Func_class: J Translation, ribosomal structure and biogenesis # Function: S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) # Organism: Streptococcus pneumoniae TIGR4 # 2 342 1 341 342 550 77.0 1e-156 MLSTEDFDFDLPEELIAQTPLKDRASSRLLVVNKETGDMEDKHFHDILDELQPGDALVMN NTRVLPARLYGEKPETGGHLEVLLLTNTEGDTWETLIKPAKRAKVGTEIQFGDGRLKAVV KEELEHGGRIIEFKYDGIFLEILESLGEMPLPPYIKERLDDPDRYQTVYAEENGSAAAPT AGLHFTKELLEEIKAKGVHLVYLTLHVGLGTFRPVSVDNIEEHHMHSEFYRLTEEAAKQL NEVRQAGGRIVAVGTTSIRTLETIGTKFNGEIQADSGWTDIFITPGYQFKVVEAFSTNFH LPKSTLVMLVSAFAGKDLTLAAYQHAIEEKYRFFSFGDAMFIK >gi|284795511|gb|ADDQ01000038.1| GENE 27 29267 - 29515 271 82 aa, chain - ## HITS:1 COG:MJ0272 KEGG:ns NR:ns ## COG: MJ0272 COG1476 # Protein_GI_number: 15668446 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Methanococcus jannaschii # 8 72 13 77 79 68 49.0 4e-12 MRKKKKSSFESSIHVYRAMARMTQQDLANRVGVSRQTIIQLERNKYNPSLLLAHDIANVF GVTIDDVFTFKETLNDDVEQEA >gi|284795511|gb|ADDQ01000038.1| GENE 28 30395 - 33040 3160 881 aa, chain + ## HITS:1 COG:lin0814 KEGG:ns NR:ns ## COG: lin0814 COG0474 # Protein_GI_number: 16799888 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Listeria innocua # 5 869 5 868 876 877 54.0 0 MEAYKQTVDTVTKEVSVNTETGLTQQEAQQRLKENGRNQFEEAKKDSVLKKFIHSLSDFT TIILLVAAAISFYTAIVTEHGEYFEGILIIAIVIINAVLAIVQEGNAEKSLAALQDMNKQ SSAVLRDGKVIEVDAEELVVGDVLVLEAGSMITADARLIQASQMRVEESALTGESEPVEK DPTYVGHDDDGLGDQINMIFKGCTVVNGRGRAVVTATGMNTEMGKIAGLLNNSDQQKTPL QKRLNQLGKRISLLALGAAAIVFIIGELQGEPLLEMFMTAVSLAVAAVPETLTVIVTLTL AYGVQKMAKKHAIIRRLPAVETLGTANVICSDKTGTLTQNKMRVRRVWHRGDEVTDTEDA MTDEAMEVLKMAALCTDVIVEKEGDELTVTGNPTEAAIVRAVEENYHTKEELEEKYPRIG EIPFDSERKMMTTVHQWGKKYISITKGAFDVLLPRFGFGDVDQAAIVNDRFGKRALRVIA VGYAVYDEPPKEITSEALEKNLRLLGLIGMIDPPRPESKGAIARAKKAGIKTVMITGDHV VTASAIAKELGILKDKSEALSGSELKKMSDEELDKRVKDLSVYARVTPEDKIRIVQSWQR SGAVVAMTGDGVNDAPALKASDVGCAMGITGTDVAQGASDMILTDDNFATIVDAVAQGRA VYRNIRKAINFLLSCNISEIFIVLIAMLLGWGAPFTAVQLLFVNVVADGLPGFALGKEPA EKGIMDEAPIPKNEGIFARGLWQKIGINAAVFTVITLFGFYLGAFVPGVSAYVSNSYEVG QTVAFLILAYSSILHVFNVRSANSVFRVKLSSNKSLFEMVVLALLITTTIALLPFTQELF GLVHISLNHWMLAIFLSFVPIFVNEMIKFHFSEVEEEEEVI >gi|284795511|gb|ADDQ01000038.1| GENE 29 33374 - 35380 1918 668 aa, chain + ## HITS:1 COG:SPy1414 KEGG:ns NR:ns ## COG: SPy1414 COG3158 # Protein_GI_number: 15675333 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transporter # Organism: Streptococcus pyogenes M1 GAS # 12 653 11 647 666 751 58.0 0 MLHKAEGFDRRKFTMAGILVAMGVVYGDIGTSPLYVMKAIVGDNGGLARVSESFILGSVS LIFWTLTILTTIKYVVIALNADNHGEGGIFSLYTLVRKKSKYLIIPAMIGGAALLADGVL TPAVTVTTAIEGLRGIPAFFERFGNDQTIIVVITLTIILILFSVQRFGTELVGKAFGPIM FLWFTFLGIIGLMNFSQDWTVIRALNPYYALQLLVSPENKLGLFILGNIFLATTGAEALY SDLGHVGKMNIRISWPYIKICLILNYLGQAAWLLTVKENPEMQALAEINPFFQMIPRGIL VFGVVFATIAAVIASQALISGSYTLVSEAIKLKLLPRLKIIYPGSNIGQMYIPAVNLILW LACSAIVLAFRTSTHMEAAYGLSITITMLMTTILLLFYLLDKIPAWSAYLISLFFAAIEV VFFFSSAAKFFHGGYVAVGMAVFLLCIMIIWERGNEIKEATAEQVSLKKYVPQLKALKED TSVPMYQTNVVFLTSDRVDGEINRNIIYSILDKQPKRANVYWFVNVQVTDEPFTQEYSVD MLGTDFIVQVQLYLGFHISQEVNVYLRQIVHDLMKTGRLPKQPQRYSLTPGREVGDFQFV LIQEELSNVSELKKWDRQIMQAKLAIKNLTTSPESWFGLEYSEVKYESVPLIIGPQRKTH LVERKNRS >gi|284795511|gb|ADDQ01000038.1| GENE 30 35450 - 36148 618 232 aa, chain - ## HITS:1 COG:no KEGG:EF0873 NR:ns ## KEGG: EF0873 # Name: not_defined # Def: Cro/CI family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 232 1 232 232 422 100.0 1e-117 MKITTKQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKAC DTTVDWLLYGDFDRFVRQLLKENFQNKQLLKPPFFTQLMGRLSEEQLSYHDSLKIMIQAQ KLQQSFYAFPLTVEAPSHSQESISIYEPTTAEEQSDQSYYHPFILSELHELFTHSQNPEL DYSLIIAFLPLLKVDQLTEPQKEVLLAIFKRMNSFKDQTLLNEFFVELQYLL >gi|284795511|gb|ADDQ01000038.1| GENE 31 36460 - 38418 2116 652 aa, chain + ## HITS:1 COG:L70979 KEGG:ns NR:ns ## COG: L70979 COG2217 # Protein_GI_number: 15672833 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 1 652 58 695 695 558 49.0 1e-158 MHMGNFKQKFWLSLILAIPIIVLSPMMGFQLPFQFTFPGSDWLVLILATVLFFYGGQPFL SGAKMELQQKSPAMMTLIAMGISVSYFYSLYAFYMNHFTNQDHVMDFFWELATLIVIMLL GHWIEMNAISNAGDALKKMAELLPDTVKRMTEHGEEEIPLQDVQEGDRLIVRSGDKIPTD GKILKGSTTVDESMVTGESKTVEKNIGDSVIGGAVNGNGMIEISVTGTGENSYLSKVMEM VKQAQSEKSKLESISDRVAKWLFYIALFVGVLAFIGWLLVTKDLSLAFERMVTVFIIACP HALGLAIPLVIARSTSIAAKNGLLLKNRNALEQANKVEYVLLDKTGTLTEGQFTVTGLEL MSKQFTREEALKYIGALEKNANHPLAIGIMNYLNKQAVQPYEAHNLQALSGVGLVATVQN QEVKIVNEKEVARLQLTFDETIKTNYQEQGNTLSYLIIAGQLVALLALGDKVKPEAKTFI AELQAQGITPVMLTGDNQTAASAVANYLGMKEYYAELLPEDKEKIVQQYLTEGHQVMMVG DGINDAPSLARASIGIAIGAGTDVAIDSADVVLTDSDPKDILRFLDLAKQTRRKMIQNLW WGAGYNIVAIPLAAGVLAPIGIVLNPAVGAVLMSLSTIIVAANAMTLHISKK >gi|284795511|gb|ADDQ01000038.1| GENE 32 38542 - 39966 673 474 aa, chain + ## HITS:1 COG:no KEGG:EF0876 NR:ns ## KEGG: EF0876 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 473 1 473 474 856 98.0 0 MDFKELLSFEHKNMLELLDLLQQEQTFSVLMAAEKLKVSDKTIHCYIQRFEKKQETFKIE GLCKIYTTTKGIVKYRELCVCGLARFRQKFCYFIPEFYILRCLIEERINYAQLTQVLGLQ ESTLRKKLSNIRRWLVNFDIIVRQKHYDLTGNEWQIRQLILCFYLFFQENCLEENRDMTR KIITFFELDLNVAQQNHLSWLIYIWEKRYRGGHEILVPKANLFQQTSAFFYLFRVEVLST SFMSLKEQKALFVILEAHFGGCFGKRARKYFIHEQMKIESLCLKTAIFIMKEIRRNFTQH HFNYQEIHLCRFLSTHMNSLLDGQAWLPAHKQEQTLAARYQQTWHRLQKLIRLLKRLYPV FTSVKERELTSCYFYHILDLFNPILYEKKYIICLLTDFPPEKERALGQSIKSYFSEKKNI TIIHGKPTYQLHQAHLLIVNHLFQMNVALSSKTVVYLPEELSPAFFEKVEANLP >gi|284795511|gb|ADDQ01000038.1| GENE 33 40035 - 40946 1104 303 aa, chain + ## HITS:1 COG:lin0643 KEGG:ns NR:ns ## COG: lin0643 COG4989 # Protein_GI_number: 16799718 # Func_class: R General function prediction only # Function: Predicted oxidoreductase # Organism: Listeria innocua # 1 303 1 305 305 388 60.0 1e-108 MKQLQFGTSDETVSSVILGCMRLNGAENPQQVIETAYDHGITFFDHADIYGGGDCETIFG KALKESTIRREDIFIQTKCGIRQGFFDFSKAHILEAVEGSLQRLGVDSVDALLLHRPDTL VEPEEVAEAFHLLEKQGKVRYFGVSNQTPGQIELLKTAVKQPLLANQLQFGIKHTGMVDQ GLQTNMEISGSIDYDHGILDYSRLKQMTIQAWSPYQYGYFEGVFIGNEKFPELNQKLSEL AEKYQTTPTGLASSWILRHPANMQVIAGSMNLGRIEEIAKAADIVISREDWYDIYRAAGN VLP >gi|284795511|gb|ADDQ01000038.1| GENE 34 41134 - 43782 3256 882 aa, chain + ## HITS:1 COG:BS_polA_2 KEGG:ns NR:ns ## COG: BS_polA_2 COG0749 # Protein_GI_number: 16079961 # Func_class: L Replication, recombination and repair # Function: DNA polymerase I - 3'-5' exonuclease and polymerase domains # Organism: Bacillus subtilis # 322 882 1 560 560 640 60.0 0 MTKKKLLLVDGNSVAFRAFFALHNSLERFKNKNGLHTNAIYAFNNMFENVMQKEMPTHVL VAFDAGKTTFRTEFYSEYKAGRSKTPGEFKEQMPYIRELLEGLGVKYYELPNYEADDIIG TLANKVDKDEFDVVVLSGDRDLTQLATDTVKVDITVKGVSDIESYTPEHIAEKYDGLTPK QIIDMKGLAGDTSDNIPGVTKIGEKTAIKLLKQYGSVEGVYENIDEMKKSKMKENLINDK EQAFLSKRLATIEVNAPVEVNVEDLAYEGKNLEKLVPFYKEMDFKQFLAKLDITEEPVEM EDILFEVVEDQLTNEMFTDDMALYVEMMEDNYHTSPIVGLAWGNNKKIYTTNNLAVFESQ PFIDWLMDETRKKNVYDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVAQ HYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHLARKIKAIQFLTSKLDSELTEKNQADLF YKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEFNLNSPKQL GVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYRQIAKIQSTYVEGLLKV IQPDNKIHTRYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYS QIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVY GISDYGLSQNLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLS DINSRNFNLRSFAERTAINTPIQGSAADILKIAMIEMARRLKEEKLQATMLLQVHDELVF EVPESELEQLNQLVKEVMEHAVSLHVPLITDSSWGKTWYEAK >gi|284795511|gb|ADDQ01000038.1| GENE 35 43882 - 44724 1025 280 aa, chain + ## HITS:1 COG:BH3152 KEGG:ns NR:ns ## COG: BH3152 COG0266 # Protein_GI_number: 15615714 # Func_class: L Replication, recombination and repair # Function: Formamidopyrimidine-DNA glycosylase # Organism: Bacillus halodurans # 1 273 1 274 274 285 52.0 7e-77 MPELPEVETVRKGLEKLVVGKTIQEVIVFWPRIIESPEVDVFQGQLAGQTIEGIERRGKF LIFKLSDNDMISHLRMEGKYEFHQADDEIAKHTHVMFTFTDGTQLRYLDVRKFGRMTLVP KNQGHQYKGILALGPEPTPDVFQLATFQQGLKKHHKAIKPLLLDQKLVTGLGNIYVDEAL WQAQIHPEQPADSLKPAEVATLYQAIIDVLARAVEAGGTTIRTYLNALGEAGTFQVALNV YGQTGLPCNRCGTPIVKTKVAQRGTHYCPQCQQLKGRRLK >gi|284795511|gb|ADDQ01000038.1| GENE 36 44721 - 45320 703 199 aa, chain + ## HITS:1 COG:BS_ytaG KEGG:ns NR:ns ## COG: BS_ytaG COG0237 # Protein_GI_number: 16079958 # Func_class: H Coenzyme transport and metabolism # Function: Dephospho-CoA kinase # Organism: Bacillus subtilis # 1 190 1 191 197 171 50.0 6e-43 MTKVLGITGGIATGKSTVVALFKKAGYPIVDGDIIAREIVAKGQPALAAIVETFGPEIVL TTGELDRKKLGQLIFANPQKRELLNETLKPFLRKEILRQIEEAKKKAALVIVDIPLLYEA HYEAIMDQVAVVYVPEKIQKERLMARNQLTEEEAQQRIASQWPIEMKKERADIVFDNQGT REETEQQVKKWLEEQTEEK >gi|284795511|gb|ADDQ01000038.1| GENE 37 45500 - 45982 510 160 aa, chain + ## HITS:1 COG:BH3146 KEGG:ns NR:ns ## COG: BH3146 COG1327 # Protein_GI_number: 15615708 # Func_class: K Transcription # Function: Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains # Organism: Bacillus halodurans # 1 150 1 150 153 181 61.0 4e-46 MRCPRCHHNNSRVIDSRQADDGRAIRRRRECENCSYRFTTFERIEAAPLLVIKKNGDREE FNRDKILRGLIRSAEKRPVAMEQMVQIVDNVENRVRSLGENEVSTTLIGEYVMEDLVNLD EIAYIRFASVYRQFKDMSVFLKELQDIVDKAKSSSPDSEN >gi|284795511|gb|ADDQ01000038.1| GENE 38 45998 - 47407 1633 469 aa, chain + ## HITS:1 COG:BS_dnaB KEGG:ns NR:ns ## COG: BS_dnaB COG3611 # Protein_GI_number: 16079951 # Func_class: L Replication, recombination and repair # Function: Replication initiation/membrane attachment protein # Organism: Bacillus subtilis # 20 465 20 465 472 120 25.0 6e-27 MKGNRQRIQPKNIFQAVIDSPLSDQEKEVLTFLYQPIVGANAFSLYWLLLSETTDSEENG SLFHADLISLLDLSCQQLEEACYKLEGIGLLETYKKTDRELGDCYLYYLKAPETAARFFK DEVLALVLFNRVGQRKFDQLVQKFQPHPTKTEGYQNVSASFQEVYAFKEEQIVSEANRLT TIQETFSQQEKSKKISVSTDSFDWHYFVEGLHRLGLQLPEDEASFQEEVYVFHQLYGINE LDMVDFASKSFDYYTSRILPKELVRTIHQAFDPDKKPQPTNVVTNKQAQLTVEEQQTYRY NTLKMNGFSELDIQMIMDSEKNPPIQYLEALKNSRGGYTTPQERSLVKYLVAKSGLPTSV INILINYVYNIQQQPTLKAEYVNRIANEWGQSGIHSPEKAIEHVRELAKQSQTKQKQRQQ NYSGKRQTVRQERLPEWADQPNDETKLSPEEQAELDRQIQEFLNQGGDQ >gi|284795511|gb|ADDQ01000038.1| GENE 39 47407 - 48336 1020 309 aa, chain + ## HITS:1 COG:lin1595 KEGG:ns NR:ns ## COG: lin1595 COG1484 # Protein_GI_number: 16800663 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Listeria innocua # 1 307 1 306 307 273 46.0 3e-73 MEDVGKEMSKIIQKRDINERYEELVNEVLKDQDVQAFIQANRERLSDEDIRKSYAKLYEF VQEKKKFQLNDPAMIAPGYEPRLMLNFHYIDVTYVPTADLIARQKEEEIRNRVRAMEMPK DVREANLRDFDPSSQGRAKALAEAVQFLREYPATPKEFHKGLYLQGPFGVGKSFLLGAMA NALAERGFTTTIVHFPTFTVEMKQAIGRDQVGEKLDAVKKSPILMIDDIGAESMTSWIRD DVLSVILQYRMQEQLVTFFSSNLDLKALEEHLTVTQRGEQEPLKARRIMERVRYLSKEIT MTGNDRRNG >gi|284795511|gb|ADDQ01000038.1| GENE 40 48523 - 49626 1013 367 aa, chain + ## HITS:1 COG:no KEGG:EF0884 NR:ns ## KEGG: EF0884 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 11 367 1 357 357 649 99.0 0 MFREKSYKVEVEKVNPKIQRLMSTDKQHFLTKHEFHTKETAERKDLLKFFIETRLKTDGG FLTNYLPDAERKDVATGHELLSESSGLYLRNLAFDTQGRFDNFYKQTKDTFYDGVQFSYR IDEQGNKYNVNASIDDLRIIRSLIEAGGHFKTDQYDQEIKKLGKSFMETSMKDNILIDFY DSKSKQQSSETSLFYIDLITLGYLYKEFGISADYLQYHYQLIDDGYISDDLPLYQTKFNH QTNKYENNGTLNIIESLLTIVHLSEVGMAKQTSIDFVRKQVQQGTLFNSYDLNGSPVDKN QSAASYAIAALIGVAENDKELYRAAITVLNNFQIMDSSSPIYGGFGDKVTKQVYSYNNLM ALLAYDF >gi|284795511|gb|ADDQ01000038.1| GENE 41 49640 - 51160 1142 506 aa, chain + ## HITS:1 COG:no KEGG:EF0885 NR:ns ## KEGG: EF0885 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 506 1 506 506 918 99.0 0 MEKIKKHMNSAFEWLSRYISPSLLAVLGIGLVTSILLFVYPINGLGDNGEYFRVLNSNSL YRVNGDSYDNVAYFVKDFSIMRYFNETTTHFVSTQQFFITIAIWLNKLFYSQTLFDIRFL GFVYLSCFLVSIYILVRGLTEGVSLKKSYLISLLVIFILGDTSYTIYFNSFYTEATSFLL SVSVLAFSVYFYRVTKPRTWLRRIVLVILAQAVVLLIGTTRQEYLLIIGVIIAGLGFFVY LSQRYQRLSMTAFLIALIGFTTLAAFIVPNDIYERDVYHSMTRGVMKDSKVPDKRMSEGG INPQYGLQKGRSYFEEYSPVSPTSEQMKKDFFDKTSFGWVLLNYLNYPSELWQGLNSAVP NVYLVKPNNVGNFEKTTGRAPLEQSKFFMVYNRIKASFFPKNFAFYLLLGVILFGLYGVG LYRGIKRNEPRLVFRFFLMTGIYLNLLVVFISTIIIDGDSDLVRHLFLVSVFLDFLLLQI VSDVIGKRMWQDTTPQVIGEVEGIEK >gi|284795511|gb|ADDQ01000038.1| GENE 42 51150 - 52733 1331 527 aa, chain + ## HITS:1 COG:lin0532 KEGG:ns NR:ns ## COG: lin0532 COG5298 # Protein_GI_number: 16799607 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 25 521 22 498 499 97 22.0 7e-20 MKNKQYLIGWVCFLLFFVFCGFAKPALAAPSKHVLLVYDSLNIAGKKENDVDALQRVLTS FGVEVQSVAVSDYVPGELLNDGYDSLISMVNWPEQAGVIASDFLADRVHFKGKQLHIGRN MRDDEKQYFSGTWKELSHRQYRLEDEKNRFSQVLPFQDQSVVLENTQGQTVGRLKTQELA PEEYPFGVIENGHAFLPMFERKGAVFLESLDVISQWLESEKMSRPFLTISDFNPLRDMSV ATYLQEELVKTTYPYILSSTSVSQNNTILPYKLFTNALRAFASTGVIFLETPVVNNVDLN DQRALKQLMEQQISLLVDRHVYPVGISAPGYWNQDLQYQEDGLAISDTVILRENPPIERV FYRNQTGESITYKNALFDLPYDYLSGIEWTDKDNPNDYRFPMPTTISFSFPNSKKEVDHL IQEVKEAPIVFSVSEADQHFTVQTQTQKIEFRNNRFFLNNQIVNGLADTGASTVEKQRFT GLFSFFFSITNNILVGVVTLTLIILIILFMIGRKNYRSKYINKEEDK >gi|284795511|gb|ADDQ01000038.1| GENE 43 52730 - 53992 1137 420 aa, chain + ## HITS:1 COG:lin0533 KEGG:ns NR:ns ## COG: lin0533 COG1215 # Protein_GI_number: 16799608 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Listeria innocua # 1 419 1 416 416 580 68.0 1e-165 MTIADIVMLTATIIIWSLLIVNILLVIFGYVYYLKTDPVAPPPVEDEDAPFVSIMVPAHN EGIVIVRTVEALLNFNYPQDRYEIIVINDNSSDNSAELLANVQKKAVNRNLQIINTDNIT GGKGKSNALNIGFKQAKGDVIAIYDADNTPEPNALRYLVGELIASEEYGAVIGKFRTRNR NASLLTRFINIETLAFQWMAQAGRFQLFKLCTIPGTNFIVRRSIIEAIGGWDDKALAEDT EISFRIYMMGYKIKFQPKAVTWEQEPQTLSVWFRQRTRWVKGNIYVIVKNAKLLFNPKAS RIRFDILYFLSIYFLLMTSLVLSDIMLVLSMSGYLTTTLQGFSNSLWLLAILLFIFSTFV SITTEKGEMTLENILIIALMYITYSQMWLVVAAYGMVMYIKENVFHKQTQTKWYKTERFK >gi|284795511|gb|ADDQ01000038.1| GENE 44 54007 - 56073 2171 688 aa, chain + ## HITS:1 COG:no KEGG:EF0888 NR:ns ## KEGG: EF0888 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 688 1 688 688 1275 99.0 0 MKQKTVTLIGLFFLAILIGVASPTVYAENKEQDNHTFTQPFQNKTISLTGTSVRSTMYFT KIDYWDVKKASFNMTYQITQLKNNQTSDLTVAVNGVKFYSWRPENTTGIQQKTIEIPLEL IKETNTLTVEGQIINQAGNDMYNLIETPANWLTMYEGSNVNFQYDLQLPENTIHSFYNHF VGADTIANKHSVILTPENASEKELAAATHALAGAARLITTSEELLPMASLNKEQSAPYQL IIASYDKLPDQYKSQIDSKRVADQAVLKFFNQSDKHVLVATSKDEDLLVRAGRYLANYEL MTQTDKEETTVDENTDTFSSTLEFDGNYPLTSTGDKLEGAYHQEQTYFVNLPVDRNNANG SRVHLHFKYAENLDFDSSLVTVYANDKPIGSKKLTAARANGDELNLEFPKNLEIADSFVL KVAFDLNVKSPEVLRNGQTPWAFIENNSNAFIQTEELNDILFNNYPNIFIRSRSFADLAI LLPEKMDDNYFKVLTNLFNLIGNYAESNVGEITYYKKAPKNAALENHNLIIFGTPKDNPM IRKLNDQLYFHYDKDFTRFVSNEKLSIEKDYGKQIGTAQLMFSPYNAKAAALILTGAKSQ GVFLASTQVNTEKNTSMYKGDAIVVDPNYRRYDYRFKKRVSNVSNESLGKRIVNNHKLMI YLFVFLIGMTIIGLSAFFIVKKNLKGGE >gi|284795511|gb|ADDQ01000038.1| GENE 45 56075 - 56503 501 142 aa, chain + ## HITS:1 COG:lin0535 KEGG:ns NR:ns ## COG: lin0535 COG2199 # Protein_GI_number: 16799610 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Listeria innocua # 8 137 8 138 284 68 30.0 2e-12 MNQKRVTLLLDVTLLVGIVLVVGTTIFMALGTNDFFVDLSCLLISVILIIVTYFVGITAG LTFSLIFIFLQLTYVVYQYVYHDLFSYGSLFWLIMPPLYCLTIYAVTYQIRMIQEENIRL RKETSQLNALDAVTNLRTAKMY >gi|284795511|gb|ADDQ01000038.1| GENE 46 56573 - 56923 384 116 aa, chain + ## HITS:1 COG:no KEGG:EF0889 NR:ns ## KEGG: EF0889 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 116 167 282 282 229 97.0 2e-59 MAYWESIRNLLSSEQKNELLQIVTAAIKETTDDRFLPYFIDGTPPTWALLIFRDGDDGYT TRKEFKQQAQEKFAHSETLRNITLTLQVSYTKYDPAEFNNASEFLGDGINSLQYDV >gi|284795511|gb|ADDQ01000038.1| GENE 47 56939 - 57250 445 103 aa, chain + ## HITS:1 COG:no KEGG:EF0890 NR:ns ## KEGG: EF0890 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 103 1 103 103 171 98.0 6e-42 MTEKIAVFTGKLAEAGVLNETQPLSMRLHLENIQAESDPESIVPLFSHGVILNILVEQLE ESIPLTHLKKGTKVRFTVVGLPPMTMSIPPHVGGQAIELIEEI >gi|284795511|gb|ADDQ01000038.1| GENE 48 57297 - 58451 1296 384 aa, chain - ## HITS:1 COG:lin2354 KEGG:ns NR:ns ## COG: lin2354 COG0436 # Protein_GI_number: 16801417 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Listeria innocua # 1 383 2 383 383 489 63.0 1e-138 MDRKNIATRYQQPTENLLMDIATLAKKTPNLIDLSIGDPDLITDERIIEQAANDAKNGHT KYTASDGSEAFIEAVIQFYQSHYQLSFQPNQVRATVGALHGMYLALQVILNPGDEVIIHE PYFSPYKDQVLLADGVPVFLPTYEEDGFQIDVALLKEKITPKTKAIILNSPNNPTGAVFS EETFREIAQVAIEHNLYILSDEVYEAFCFQETFTPMATFAPENTITFGSFSKAFAMTGWR IGYMIAPDYINEVAKLINEGVTYSAPTLSQQAGIYALQHFDEFVDPIVEVFQARLEYVAQ RVAKIPFLSLHPVKGSIYAFINIQKTGLTSVPFVEKLLKETQVLVIPGKAFGETTGDEYI RLAATQSLDLLKEAFDRIERMTFE >gi|284795511|gb|ADDQ01000038.1| GENE 49 58467 - 59189 634 240 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 239 1 242 245 248 52 8e-65 MINIKNLQKTFGKNEVLKGIDLEIEAGEVVVIIGPSGSGKSTFLRCLNLLETPTGGSVEF EGKNLLDKNTNIDQLRQKMGMVFQNFNLFPHKNVLENLTISPVKVKKEAAAEATEHALSL LEQVGLSDKKENYPAQLSGGQQQRVAIARALAMRPDVMLFDEPTSALDPEMVGEVLSVMK NLAIEGMTMVVVTHEMGFAKEVADRVIFMDAGIIQEEGTPEEIFDAPQNPRTQDFLRKVL >gi|284795511|gb|ADDQ01000038.1| GENE 50 59182 - 60645 1645 487 aa, chain - ## HITS:1 COG:lin2352_1 KEGG:ns NR:ns ## COG: lin2352_1 COG0834 # Protein_GI_number: 16801415 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Listeria innocua # 5 271 3 271 271 312 62.0 8e-85 MTKCKKWLQTILPILFLLLSLLPIKETFAAENDPVYDKIIQKGELVVGLSADYAPYEFHA KVDGEDKIVGFDISIAQKIADDLGVKLKIEELGFDALLGALKTGKIDMVISGMSPTPERL KEVAFSQPYMNVQQRVIVRKEDKDKFHSTKDFEGVRAGAQKQTTQEELIKTELTGAVPTS LQKIPDLIMNLKNNKLDAVVMEEPVGEAYVSQNEDLAFADVTFEKGSKDTAVAFPKDAPV LTEKVNASIKQINDQKLMDGYKKEANQLMFQKDQSFLQKYGKFYLNGAGYTIFLAFIGVL FGAILGALLALMKLANSKILRGIAIAYIEYVRGTPLLVQIFIVYFGTGVLGLDLSKVAAG CIALSLNSGAYVAEIIRAGIQAVNKGQLEAARSLGMNQNQAMRYIIFPQAIKNILPALGN EFVTVIKESSVVSVIGVSELIFQAGNVQGASFKPFLPYLIVSLIYFVLTFTISRLLGVAE RRMSTSD >gi|284795511|gb|ADDQ01000038.1| GENE 51 60700 - 60819 71 39 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYKNLLCYDVVYHIIEYVKGKVVELKKYNFFKKIFKSQK >gi|284795511|gb|ADDQ01000038.1| GENE 52 60834 - 61922 1426 362 aa, chain + ## HITS:1 COG:lin1848 KEGG:ns NR:ns ## COG: lin1848 COG0371 # Protein_GI_number: 16800915 # Func_class: C Energy production and conversion # Function: Glycerol dehydrogenase and related enzymes # Organism: Listeria innocua # 1 362 2 364 368 397 53.0 1e-110 MEQSLIVRGTPQEYLCEIGSWELLEGQLLCRNIHRVFILHGTESWQAAKPYFPTFQKVTA VFENYGGVCTDQRVQELEAQVLDNHLEAIVAVGGGKVADLGKALAHKMALPVIILPTLAA TCAPCTPLSVMYREDGAMERYDVFPQANALVLVEPRVLLHWPRSLMVAGIGDTLAKWYEA DAIISQLDVQVLPIQVSHFAAEKCRDILLNESINALKAMEEQQLNQSFIDVIETNLIIGG MVGGFGDDYGRTAGAHSIHDALTLLPASHRQLHGNKVAYGVFVQLAIEEKWQEIAELIPF YHQLGLPISLKEMEMDLTEAEYQEVAERACIEGETIHYMKQKITPEIVKTAMQDLEKYTA TK >gi|284795511|gb|ADDQ01000038.1| GENE 53 62081 - 63226 1251 381 aa, chain + ## HITS:1 COG:SP2058 KEGG:ns NR:ns ## COG: SP2058 COG0343 # Protein_GI_number: 15901878 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Queuine/archaeosine tRNA-ribosyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 376 1 376 380 682 83.0 0 MTEPAIRYRLIKKDKHTGARLGELITPHGTFPTPMFMPVGTLATVKTMSPEELKEMGAGV ILSNTYHLWLRPGEDLVEEAGGLHKFMNWDQPILTDSGGFQVFSLSDMRKIEEEGVHFRN HLNGSKMFLSPEKAINIQNKLGSDIMMSFDECPPFDESYEYVKRSIERTSRWAERGLKAH ANPDRQGLFGIVQGAGFEDLRRQSAKDLVSMDFPGYSIGGLSVGESKEEMNRVLDFTTPL IPENKPRYLMGVGAPDSLIDGVIRGIDMFDCVLPTRIARNGTCMTSQGRLVVKNAQYASD FRPLDEKCDCYVCRNYTRAYIRHLIKCDETFGIRLTSYHNLYFLLDLMKNVRQAIMDDNL LEFRQAFFEEYGFNKANAKSF >gi|284795511|gb|ADDQ01000038.1| GENE 54 63308 - 63685 578 125 aa, chain + ## HITS:1 COG:SP2029 KEGG:ns NR:ns ## COG: SP2029 COG1862 # Protein_GI_number: 15901850 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YajC # Organism: Streptococcus pneumoniae TIGR4 # 1 84 1 86 99 73 45.0 1e-13 MGGGFTMIFTLVLLGGMMFFMTRSQKKQQQERQKQLNSMKTGDSVVTIGGLHGVLSEINE KTVLIDCEGIVLEFDLAAIRTVTPGTAVTNDSAVTSVPVTEVEETVTEEVTEVPETSDPS KEKKD >gi|284795511|gb|ADDQ01000038.1| GENE 55 63965 - 64252 264 95 aa, chain + ## HITS:1 COG:no KEGG:EF0899 NR:ns ## KEGG: EF0899 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 95 1 95 95 155 96.0 4e-37 MTKEKLSWLQQKMLNKSIKKKCQNFRELGYSSINEEDLLTYLLTYRWKKQARLSVKDCRK DIQKVKPNEFFDYQQLLAQTSKNPLRDWHDIEDLF >gi|284795511|gb|ADDQ01000038.1| GENE 56 64412 - 67009 3226 865 aa, chain + ## HITS:1 COG:SA0143_2 KEGG:ns NR:ns ## COG: SA0143_2 COG1454 # Protein_GI_number: 15925852 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Staphylococcus aureus N315 # 457 863 1 407 411 650 76.0 0 MVKTVKKEKTETVDVSSMIDELATKANVALKAMEDFTQEQVDHIVHQMAMAALDQHMPLA KMAVEETGRGIYEDKAIKNMYASEYIWNNIKHDKTVGVINKDEQTGLMEIAEPVGVVCGV TPTTNPTSTTIFKSLIALKTRNPIVFAFHPSAQKCSAEAARIVRDAAIAAGAPENCIQWI EQPSIDATSALMNHPGIAIVLATGGAGMVKSAYSTGKPALGVGPGNVPAYIEKTAKVKRA VNDLIVSKSFDNGMICASEQAVIVDKEIYASVKAEFEAHNVYFVKPNELQKLEDAVMNEG KYAVNPAIVGNSAEKIAELAGISVPKGTKILVAELEGAGPEYPLSREKLSPVLAMMKSNN AEHAFELCEAMLNLGGLGHTAVIHTEDEELQVAFGLRMKACRILVNTPSAEGGIGNIYNE MIPSLTLGCGSYGKNSVSKNVSAINLINIKTVAKRRNNMQWFKLPPKIFFEKNSLQYLQK MENVERVMLVCDPGMVQFGYADIVRKELQKRKNDVKIEVFSDVEPNPSTNTVYAGTKMMV DFQPDTVIALGGGSAMDAAKGMWMFYEHPDTEFFGAKQKFLDIRKRTYKIAKPEKTQFVC IPTTSGTGSEVTPFAVITDSETHVKYPLADYALTPDVAIVDPQFVMSVPASVTADTGMDV LTHAIESYVSVMASDYTRGLSLQAIKLVFDHLENSVKRPDMESREKMHNASTMAGMAFAN AFLGICHSIAHKIGGEYGIPHGRTNAILLPHIIRYNAKDPSKHAMFPKYDYFRADTDYAD IAKFLGLKGNTTAELVEALATAVADLGKSVGIDMNLKAQGVSQETLDTTVDRMAELAYED QCTTANPKEPLISELKQIILDAYVG >gi|284795511|gb|ADDQ01000038.1| GENE 57 67054 - 68097 1034 347 aa, chain - ## HITS:1 COG:SA2136 KEGG:ns NR:ns ## COG: SA2136 COG1304 # Protein_GI_number: 15927926 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Staphylococcus aureus N315 # 3 340 9 345 349 318 45.0 7e-87 MNRKDEHLSLAKAFHKEKSNDFDRVRFVHQSFAESAVNEVDISTSFLSFQLPQPFYVNAM TGGSQRAKEINQQLGIIAKETGLLVATGSVSAALKDASLADTYQIMRKENPDGLIFANIG AGLGVEEAKRALDLFQANALQIHVNVPQELVMPEGDRDFTNWLTKIEAIVQAVEVPVIVK EVGFGMSQETLEKLTSIGVQAADVSGQGGTSFTQIENARRKKRELSFLDDWGQSTVISLL ESQNWQKKLTILGSGGVRNSLDVVKGLALGAKSMGVAGTILASLMSKNGLENTLALVQQW QEEVKMLYTLLGKKTTEELTSTALILDPVLVNWCHNRGIDSTVFAKR >gi|284795511|gb|ADDQ01000038.1| GENE 58 68081 - 69187 1123 368 aa, chain - ## HITS:1 COG:SA0549 KEGG:ns NR:ns ## COG: SA0549 COG1577 # Protein_GI_number: 15926270 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Staphylococcus aureus N315 # 1 357 1 358 358 320 44.0 4e-87 MIEVTTPGKLFIAGEYAVVEPGHPAIIVAVDQFVTVTVEETTDEGSIQSAQYSSLPIRWT RRNGELVLDIRENPFHYVLAAIHLTEKYAQEQNKELSFYHLKVTSELDSSNGRKYGLGSS GAVTVGTVKALNIFYDLGLENEEIFKLSALAHLAVQGNGSCGDIAASCYGGWIAFSTFDH DWVNQKVATETLTDLLAMDWPELMIFPLKVPKQLRLLIGWTGSPASTSDLVDRVHQSKEE KQAAYEQFLMKSRLCVETMINGFNTGKISVIQKQITKNRQLLAELSSLTGVVIETEALKN LCDLAESYTGAAKSSGAGGGDCGIVIFRQKSGILPLMTAWEKDGITPLPLHVYTYGQKEC KEKHESKR >gi|284795511|gb|ADDQ01000038.1| GENE 59 69190 - 70185 1051 331 aa, chain - ## HITS:1 COG:SA0548 KEGG:ns NR:ns ## COG: SA0548 COG3407 # Protein_GI_number: 15926269 # Func_class: I Lipid transport and metabolism # Function: Mevalonate pyrophosphate decarboxylase # Organism: Staphylococcus aureus N315 # 3 325 4 327 327 350 57.0 2e-96 MLSGKARAHTNIALIKYWGKANEEYILPMNSSLSLTLDAFYTETTVTFDAHYSEDVFILD GILQNEKQTKKVKEFLNLVRQQADCTWFAKVESQNFVPTAAGLASSASGLAALAGACNVA LGLNLSAKDLSRLARRGSGSACRSIFGGFAQWNKGHSDETSFAENIPANNWENELAMLFI LINDGEKDVSSRDGMKRTVETSSFYQGWLDNVEKDLSQVHEAIKTKDFPRLGEIIEANGL RMHGTTLGAVPPFTYWSPGSLQAMALVRQARAKGIPCYFTMDAGPNVKVLVEKKNLEALK TFLSEHFSKEQLVPAFAGPGIELFETKGMDK >gi|284795511|gb|ADDQ01000038.1| GENE 60 70185 - 71129 923 314 aa, chain - ## HITS:1 COG:lin0010 KEGG:ns NR:ns ## COG: lin0010 COG1577 # Protein_GI_number: 16799089 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Listeria innocua # 9 307 4 301 322 214 42.0 3e-55 MNIKKQGLGQATGKIILMGEHAVVYGEPAIAFPFQATEITAVFTPAKTMQIDCAYFTGLL EDVPQELANIKEVVQQTLHFLKEDTFKGTLTLTSTIPAERGMGSSAATAVAIVRSLFDYF DYAYTYQELFELVSLSEKIAHGNPSGIDAAATSGADPLFFTRGFPPTHFSMNLSNAYLVV ADTGIKGQTREAVKDIAQLAQNNPTAIAETMKQLGSFTKEAKQAILQDDKQKLGQLMTLA QEQLQQLTVSNDMLDRLVALSQEHGALGAKLTGGGRGGCMIALTDNKKTAQTIAQTLEEN GAVATWIQSLEVKK >gi|284795511|gb|ADDQ01000038.1| GENE 61 71399 - 72034 429 211 aa, chain - ## HITS:1 COG:BS_yisX KEGG:ns NR:ns ## COG: BS_yisX COG1357 # Protein_GI_number: 16078153 # Func_class: S Function unknown # Function: Uncharacterized low-complexity proteins # Organism: Bacillus subtilis # 9 210 9 211 212 113 29.0 2e-25 MKITYPLPPNLPEQLPLLTNCQLEDEAILENHLYQQIDLPNQEVRNLVFRDAVFDHLSLA NGQFASFDCSNVRFEACDFSNVEWLSGSFHRVTFLRCNLTGTNFADSYLKDCLFEDCKAD YASFRFANFNLVHFNQTRLVESEFFEVTWKKLLLEACDLTESNWLNTSLKGLDFSQNTFE RLTFSPNYLSGLKVTPEQAIYLASALGLVIT >gi|284795511|gb|ADDQ01000038.1| GENE 62 72031 - 73104 1054 357 aa, chain - ## HITS:1 COG:Cj0557c KEGG:ns NR:ns ## COG: Cj0557c COG1289 # Protein_GI_number: 15791918 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Campylobacter jejuni # 20 329 28 337 361 113 28.0 6e-25 MKNSTFLKDLFAIDKANDELFRLVGVAICMAIPLLIGYFSNNLLIGTFGSMGIYTFIYYQ PLPLPQLLRRLNIVGFFIVLGNSLGMLSHHVPWLIPITIAIVAFLARLLFRLYGIEKPGA LLVIMSTAMGTSNNFPLHKIPIMASFVLLGVVTGIIMGIVLHFIDKRPYVFQKRMSLQER LYIDPASLLDALHYAAILFLAAYLSQSLHLVNAYWMTFTCAAILQGENLHSVMQRNVQRI LGTSLGLLLSAILLMIPFTPLQTIGIISILYAAFEGFINRNYAIASFFITPMSLLLSNLA RQQVISNLLNYRLVGIVLGSLLGFAGAYVFTTALRFYNRAYSIDETFENQQEERGVL >gi|284795511|gb|ADDQ01000038.1| GENE 63 73348 - 75018 2039 556 aa, chain + ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 22 556 22 559 559 442 44.0 1e-124 MKLKKSLTFGVITLFSVTTLAACGGGGTSDSSSASGGGKASGEQVLRVTEQQEMPTADLS LATDRISFIALNNVYEGIYRLDKDNKVQPAGAAEKAEVSEDGLTYKIKLNKDAKWSDGKP VTANDYVYGWQRTVDPATASEYAYLYASVKNGDAIAKGEKDKSELGIKAVSDTELEITLE KATPYFDYLLAFPSFFPQRQDIVEKYGKNYASNSESAVYNGPFVLDGFDGPGTDTKWSFK KNDQYWDKDTVKLDSVDVNVVKESPTALNLFQDGQTDDVVLSGELAQQMANDPAFVSQKE ASTQYMELNQRDEKSPFRNANLRKAISYSIDRKALVESILGDGSIEPNGLVPADMAKDPS GGKDFAKEAGSQIEYDTKKAKEYWEKAKKELGISTLTMDILSSDADSSKKTVEFVQGSIQ DALDGVKVTVSPVPFSVRLDRSNKGDFDAVIGGWSADYADPSSFLDLFASDNSYNRGRYN NSEFDKFVKAASSADATDPEKRWDDMLNAEKTIMGDMGVVPLFQKSEAHLRAEKVKDVAV HPAGATYDYKWAYISE >gi|284795511|gb|ADDQ01000038.1| GENE 64 75097 - 75447 305 116 aa, chain - ## HITS:1 COG:no KEGG:EF0908 NR:ns ## KEGG: EF0908 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 116 1 116 116 169 99.0 3e-41 MKTFKWPIITAVISSIGIFLYLLISKEPITTSSLSDTFFIVSLFFLIIGIALWIMSSGFF DNFQRSMKNAFRFKKKNEPKEFIPLSVIGDAHRSFWLKTGGILLILSLGFLLFYLV >gi|284795511|gb|ADDQ01000038.1| GENE 65 75538 - 76479 244 313 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 [Haemophilus parasuis 29755] # 9 303 6 310 320 98 25 1e-19 MNSFGKYFLKRIFFMIITLWLIATITFFLMQLLPGTPYTNQEKLSPETIAMLNKQSGLDK PVIVQYGIYLKNLVTGDFGISFQFKNQPVAKLLAGRIGPSLQLGGQAIIFGTLVGILLGI IAAMRQNTWVDTLATLLAILGRSIPNFVFAVLLQYIFAMKLRILPIAMWNGFAYTILPTI ALAMSPMADSARFIRTEMVEVLHSDYVELAKAKGLSRWQVAFRHGLRNSLIPLITLLGPL AVGLMTGSLVVENIFAIPGIGEQFVKSIMTNDYPTIMAVTILYSTMLVVVILIVDLLYGL IDPRIRVSGGAKG >gi|284795511|gb|ADDQ01000038.1| GENE 66 76479 - 77531 1091 350 aa, chain + ## HITS:1 COG:lin2298 KEGG:ns NR:ns ## COG: lin2298 COG1173 # Protein_GI_number: 16801362 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Listeria innocua # 16 350 6 344 344 353 55.0 3e-97 METVNKNNLPQAIKDIPADEFQPLNTSTLKERERIATPSLSFLQDSWRRLKKNKAAVISM SFLAVIIFISIITIWVSPHNPTKQNVSYINLPPRIPGLESVNGLNGKTTVAGQLVDKYAQ ANVPDNVNFYLGTDGLGRDVLSRLFMGTRISLLIAFIAAILDITIGVTYGLISGLVGGRV DTVMQRILEVLSGIPNLVVMILMLTVFDPGIVSIVLAMVITNWISMARIVRAQTMKLKDQ EFVMAAETLGESRWKIAIKHILPNISSVIIVQMMFSIPSAIFFEAFLSFIGLGLRPPTAS LGTLLNEGYKTFRFLPYLMWIPAATLSVIMICFNLLADGLRDAFDPKMKE >gi|284795511|gb|ADDQ01000038.1| GENE 67 77547 - 78599 1416 350 aa, chain + ## HITS:1 COG:lin2297 KEGG:ns NR:ns ## COG: lin2297 COG0444 # Protein_GI_number: 16801361 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component # Organism: Listeria innocua # 1 341 1 342 358 499 72.0 1e-141 MEKVLEVKDLRISFDTFAGKVNAIRGVSFDLYKGETLAIVGESGSGKSVTTRSIMRLLSS NANIDNGEILFKGQDIVHKTEKQMQAIRGKEIAMIFQDPMTSLDPTMPIGKQVAESLIKH NKVSKKEGLAQALELLKLVGIPNAEKRLKNYPHQFSGGQRQRIVIAIALICYPEVLIADE PTTALDVTIQAQILELLKDLQEKISTSIIFITHDLGVVANVADRVAVMYGGRLVEVGTAE EIFYNPQHPYTWGLLGSMPTMEGTEDKLYAIPGSPPDLLDPPTGDAFYPRNEFALKIDTE KEPPYFEVSPTHKAATWLLAPQAPKVTPPAEIVRRWAIYAERQKNPGGSN >gi|284795511|gb|ADDQ01000038.1| GENE 68 78599 - 79555 1283 318 aa, chain + ## HITS:1 COG:lin2296 KEGG:ns NR:ns ## COG: lin2296 COG4608 # Protein_GI_number: 16801360 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, ATPase component # Organism: Listeria innocua # 1 308 1 311 322 428 68.0 1e-120 MAEEKKVLLEVTGLKQYFNVGRKDEVKAIDDISFHIFEGETFGLVGESGSGKSTTGRSVI RLYDPTAGEILFDGKDISKIKSKADMQAFRRDVQMIFQDPYASLNPRMKVNDIIAEGIDV NGLAKTPKEREEKVNELLKTVGLNPSHSTRYPHEFSGGQRQRIGIARALAVNPRFIICDE PISALDVSIQAQVVNLLQDLQKEQGLTYLFIAHDLSMVKHISDRIGVMHSGKLLEMGTSD DVYNFGVHPYTESLLSAIPLPDPDYERTRKRIVYQPAAADGKDRELREILNGHYVYCAED EVAMYREKIEEKKRKAGL >gi|284795511|gb|ADDQ01000038.1| GENE 69 79596 - 80666 780 356 aa, chain + ## HITS:1 COG:DR0666 KEGG:ns NR:ns ## COG: DR0666 COG0675 # Protein_GI_number: 15805693 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Deinococcus radiodurans # 5 314 5 316 408 146 34.0 7e-35 MKALKAYKYRLYPTSKQEEFIQKTFSCVRLVYNLMLQDRIDIYKEMRKNPQQTFKMPTPA KYKKQYPVLREVDSLALANAQVYLDRAFKNFYREKGMGFPKKKKKETVHSYTTNNQHGTV KILDNRYLKVPKLKSLIKMKVHRQPLGEIKSVTISMSASHNYYVSILCEAPIETKTKQQK MVGICSSREKFALLSNGESFEKSYCSKHLKQKLRQEERKLNKRKMIALEKGVDLSQAKNY QKQKIKVAKIREKIANQRTDILNKITTELVSSYDVICIEKAHHSNERPPKYDRSELAWSL FLAKLLYKAQWYGKELICIESEEIETELSFSESTENSEYLRSQKILERGLSKRETL >gi|284795511|gb|ADDQ01000038.1| GENE 70 81088 - 81588 422 166 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 [Vibrio campbellii AND4] # 2 163 1 164 166 167 50 3e-40 MVNDGIRARELRLIGQDGEQLGVKTKAEALQIAESANLDLVLVAPGAKPPVARIMDYGKF RFEQQKKEREARKKRKVINVKEVRLSPTIDVNDFNTKLRNARKFLEKGDKVKASIRFKGR AITHKEIGQKVLDRLAEETADIATVEQKAKMDGRSMFLTLAPKNDK >gi|284795511|gb|ADDQ01000038.1| GENE 71 81702 - 81902 340 66 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375499|ref|NP_814653.1| 50S ribosomal protein L35 [Enterococcus faecalis V583] # 1 66 1 66 66 135 100 1e-30 MPKQKTHRGLAKRVKRTGGGGLKRGRAFTSHRFHGKTKKQRRQLRKASMVAKGDYKRIRQ QLARMK >gi|284795511|gb|ADDQ01000038.1| GENE 72 81963 - 82322 595 119 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375500|ref|NP_814654.1| 50S ribosomal protein L20 [Enterococcus faecalis V583] # 1 119 1 119 119 233 100 3e-60 MARVKGGTVTRKRRKKVLKLAKGYYGSKHTLFKSAKEQVMNSYYYAFRDRRQKKRDFRKL WIARINAAARMNGLSYSKLMHGLKLAEIDINRKMLADLAVNDAAAFTALAEQAKDALSK >gi|284795511|gb|ADDQ01000038.1| GENE 73 82370 - 82720 613 116 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238856926|ref|ZP_04647185.1| 30S ribosomal protein S8 [Enterococcus faecalis TUSoD Ef11] # 1 116 1 116 116 240 99 2e-62 MTFQETISAYIQERYQITPDFPFKKHPDYLVFRHPRNAKWFALIMPLDAQLLGATENKQL TILTVKLAPELIALLKNQPGYFPAYHMNKEHWLSLSEEIPLSQVFSFIDESYQRSY >gi|284795511|gb|ADDQ01000038.1| GENE 74 82818 - 83177 563 119 aa, chain + ## HITS:1 COG:L101688 KEGG:ns NR:ns ## COG: L101688 COG3759 # Protein_GI_number: 15673453 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 1 116 1 116 119 122 69.0 1e-28 MTLISTILVTLVAVEFFYIMYLETIVPTSETTSRVFKMDKQELQRKSVTTLFKNQGIYNG LIGAGLIYSVYFAQATMEMTKFLLIYIILVAAYGSLSSDKKIILTQGGLAIVALLSLLV >gi|284795511|gb|ADDQ01000038.1| GENE 75 83305 - 83739 597 144 aa, chain + ## HITS:1 COG:lin1092 KEGG:ns NR:ns ## COG: lin1092 COG0454 # Protein_GI_number: 16800161 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Listeria innocua # 1 142 2 142 150 108 40.0 4e-24 MLNQKEVKKTDYPQLISLWRSSVEATHLFLSQADIDKIEVVLPDYFQQVQLSMWLNEEQK CVGFSGTNQQTLEMLFIDPVYFRKGYGGEIIKKLIEQESIVFVDANKQNEGAVKFYQSQG FQVIGESKEDPQGNPFPILHMKRI >gi|284795511|gb|ADDQ01000038.1| GENE 76 83757 - 84272 195 171 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148360238|ref|YP_001251445.1| nucleotidyltransferase PLUS glutamate rich protein GrpB PLUS ribosomal protein alanine acetyltransferase [Legionella pneumophila str. Corby] # 3 165 175 342 601 79 31 6e-14 MRVIVTEYQPAWVEQFEEEAQALKQILKENCLKVEHIGSTSVPNLAAKPIIDFLVIVEEI EKVDLLQGEFERIGYEYMGEFGLSGRRYLRKGPIKRTHHVHIYQFDNTQEILRHLAFRNY LRENPAIATTYGTLKKQLAQAHPDSIDKYMDGKDAFIKKIEKEALKKYWEK >gi|284795511|gb|ADDQ01000038.1| GENE 77 84288 - 85463 1143 391 aa, chain - ## HITS:1 COG:PA2563 KEGG:ns NR:ns ## COG: PA2563 COG0659 # Protein_GI_number: 15597759 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfate permease and related transporters (MFS superfamily) # Organism: Pseudomonas aeruginosa # 1 380 1 382 495 343 49.0 3e-94 MLFSFKKNEWLGNERNDLFAGLVSSVAILPEVIGFAIIAGVHPLSAVFASAVTLLVITFT GGRPAMVSASAGSMALVLAGLIQAHGLSYMLAATILTGFLQFILGYLGIHKLMRFIPKTV MYGFVNALAILIFMAQVQQLPHQTLWSYGMIICSILLIYLLPKFITIVPPALIVILFMTI LSYFLKGHLQTVGDLGEMSQFHPAIRWPNVPVNLETLRIILPSSVALAMVGLIESLLTIP IVDKMTASQSDSQREVKAQGFANIITGFFGGQAGCAMIGQAVINVKSGGRKRLSTLISGI TLLLFIFVFKSVMVAIPTAALIGIMMTVAVDTFDWESLQLFRTFEITEIVILLVTVGVIV YTHNLAIGIILGVLLSGLLYHFFKKEPKKSC >gi|284795511|gb|ADDQ01000038.1| GENE 78 85557 - 86585 901 342 aa, chain - ## HITS:1 COG:L178384 KEGG:ns NR:ns ## COG: L178384 COG2855 # Protein_GI_number: 15672357 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 15 330 3 319 331 280 56.0 3e-75 MKNSENDYIQSLFQILPGLLTAFLVACLSKFLAIWLPSLGAATIAILLGIFLGNTFVRGA NLNRGTKVAESKLLEFSVVLLGTTVTFQTIAQIGLQGVAFILIQMSLTIIFAYLIGKKLA FSDNMSLLMAGGNAVCGSSAIASIAPAIQADEEEKGQIITLVNLLGTVLMLTLPILSGIL YGTNLLARSALIGGTLQSVGQVVASANMVNENAVQLAMLFKIMRIVLLVAVVYLFGRFKQ SKTAESEAELVEVTKKSSALPWYVVGFFIACVFNSLIHFPVVISETAHFFSSWFEITALA AIGLRLDFKKFFQEGKRFLIYGLSVGTVQVGLAILLLALLQF >gi|284795511|gb|ADDQ01000038.1| GENE 79 86728 - 87528 649 266 aa, chain + ## HITS:1 COG:L0220 KEGG:ns NR:ns ## COG: L0220 COG0583 # Protein_GI_number: 15672356 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 255 11 266 272 180 39.0 2e-45 MYEQMNFSKAATCLYISQPAVSNQIKQLEEELGCSLFLRNGRQDVVPTRQAEVLYNRLLN LADDWQETLTALHQARLPKETCRIAASNTFAVYYLPQLMQHLQTKYATINFVLEMNNSEE VVEKVEKHQVDFGFIEKPLITKGASREEIIQDQLVLAGDPANQNWLVREKDSGVFHYTQQ YLEESNQSPTLMTVKNNEMIVKMLELGMGQSLLSRKAITEKIPFQTLGEKYWRSFYFLTR GHLKSSLLQEVKQAIYRFYQKEMNKY >gi|284795511|gb|ADDQ01000038.1| GENE 80 87593 - 88465 765 290 aa, chain + ## HITS:1 COG:CAC3467 KEGG:ns NR:ns ## COG: CAC3467 COG3865 # Protein_GI_number: 15896706 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 288 1 294 294 169 32.0 7e-42 MPKFSPCLWFDTQAEEAANFYTTIFEKGAILSKTNYVNEEHQPQGTSLMTIEFTLANQTI IGLNGGPEFSFTPASSFFVECKTLSQTETLWKNLTADGQILMPFGEYPFSPLYGWVVDKF GVSWQVSFSGKEQTIVPTFMFANEKYGEAAKALSEWLAIFGPGEIIEKVEYEDGNVAQAL FTLQEQPFRVMDARDKHDFDFTMAFSIYIDCENQEEIDRLWQQVTAKGKEWPCGWMEDQF GVSWQTGNPELKCYLSDSNPARANEVTKKLYQMKKIDLNQLKEVYDKYNH >gi|284795511|gb|ADDQ01000038.1| GENE 81 88740 - 88964 282 74 aa, chain + ## HITS:1 COG:no KEGG:EF0925 NR:ns ## KEGG: EF0925 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 74 1 74 74 95 98.0 4e-19 MIELIVLLTVFTYGTNFVLYLILKNKKSMPIVEKASIILGINMSVLLLDGIFAFVGKFIM LSEWELLAPIFEIV >gi|284795511|gb|ADDQ01000038.1| GENE 82 89053 - 89727 763 224 aa, chain + ## HITS:1 COG:CAC0224 KEGG:ns NR:ns ## COG: CAC0224 COG0745 # Protein_GI_number: 15893516 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 1 223 1 222 223 247 52.0 1e-65 MAKIMIVEDETTIRELISEELQKWQFETIGTTDFNDVLDDFQEENPQLVLMDINLPVYDG YYWCQKIREVSKVPIIFISSRSTNMDMIMAMNMGADDFVTKPFQIDVLIAKINALLRRSY NYSDTDSEVLSHNGITLNVDNGRMEIRGEMIDLSKNEYRLLYLLMKKHGKILTREKLLRA LWDDERFVDDNTLTVNINRLRKKIEQAGIAGYIETKVGVGYMVP >gi|284795511|gb|ADDQ01000038.1| GENE 83 89741 - 90766 911 341 aa, chain + ## HITS:1 COG:CAC0225 KEGG:ns NR:ns ## COG: CAC0225 COG0642 # Protein_GI_number: 15893517 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 1 340 1 336 339 201 33.0 2e-51 MTILKYLKDRWLLLIGWLFFLFLTCFILWLAPNVRLDWTVVGYIFLLQSVFLSLFLTIDY YLKRKWWLSLATEKEPPSLQEYLNTAEKEEELLVQTYINGLLQEHQQTMQQAINNQQDQK DYIDSWVHEIKVPLAAITLLVQSVEDDIPEKKYYLLENELGKIDEYVEQVLYYARLDSFS RDYLLQEYSLKEIVQSVVRTQANYFIQKRLQFSIEGEDEAVLTDRKWVIFIFRQLLSNAV KYTPEGGTITVLISKNKQGIYLSLKDSGIGIPTQDQRRIFDKGFTGENGRKSEQHSTGLG LYLAHSLAKKLGHDLTVESTEGQGTTMTLFFPSLSYYNEVK >gi|284795511|gb|ADDQ01000038.1| GENE 84 90914 - 91777 1093 287 aa, chain + ## HITS:1 COG:SPy2205 KEGG:ns NR:ns ## COG: SPy2205 COG4975 # Protein_GI_number: 15675938 # Func_class: G Carbohydrate transport and metabolism # Function: Putative glucose uptake permease # Organism: Streptococcus pyogenes M1 GAS # 10 287 1 277 277 233 49.0 3e-61 MSLLIALVPMIAWGSIGLVSGKIGGSANQQTLGMTIGALLFSIVVFFVIQPTLTTATLIV GFISGLFWSLGQNQQFHSMKYMGVSVGLPISTGMQLVVNTVAGAVFFHEWTKTKDFVVGF IALAFLVFGVYLTARQDDDSQPKTSNSMLDFNKGIRALIFSTVGYGVYTIIINATGLDPW GIILPQSIGMLVGASFFAFKKVKVDRFVWMNMTTGLLWGLGNICMLLTMREIGLAISFSL SQMGIIISTLGGIFLLGERKSKKEMFYVIFGCIFVILGGILLGYMKA >gi|284795511|gb|ADDQ01000038.1| GENE 85 91818 - 93209 1442 463 aa, chain + ## HITS:1 COG:lin0648 KEGG:ns NR:ns ## COG: lin0648 COG0531 # Protein_GI_number: 16799723 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Listeria innocua # 2 455 3 458 463 422 50.0 1e-118 MSIFRKKEITVPVNDSGGMKKNLKTMDLIFLGIGAVVGTGIFVVTGVAAERYAGPGLVLS FLVAAAAIILSGLCYAEFASRIPVIGGPYAYMYVVFGEIVAWMTGWMIICEFFLAVSSVA SGWSGYVHGFLDSLGFSLPQALSGAYNPTNGTYIDLIAMLVVVAVTFWVSLEAKTALRLN NLMVFVKFGIILLFVLVGIFYVKPTNWQPFIPYGFSGVFSGAALVFFAFLGFDAVSMAAE EVKNPKKDIPKGIIGSIIISTLLYIVVTLVLTGIVPFTDLGVKDPVAFAMRFINHGAIAT IISVGAILTLLTVTIAMMYSLARVIYAISKDGLLPQFMSKIDEKRHTPKNATYVAGFLAM VFAGIVPMEMLAELTNIVTLFYLMFLALGIIKLRTMKGEPQAGEFKVPLVPVLPLISIVV CAALMFQLSLATWQVFGIAVVIGLAIYFFYGRHHSIVRFETKE >gi|284795511|gb|ADDQ01000038.1| GENE 86 93397 - 95406 2357 669 aa, chain + ## HITS:1 COG:lin0216_1 KEGG:ns NR:ns ## COG: lin0216_1 COG0143 # Protein_GI_number: 16799293 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA synthetase # Organism: Listeria innocua # 3 544 4 547 549 808 71.0 0 MSQKETFYITTPIYYPSGKLHIGNSYTTIACDAMARYKRLMGFDVFYLTGVDEHGQKIEK KAAELNVTPKEYVDKMAADVQKLWKTLDISYDKFIRTTDDYHMAAVQQIFDRLVEQGDIY LGEYEGWYSVSDEEFFTETQLAEVYRDDEGNVIGGKAPSGHEVELVKEESYFFRMSKYAD RLVQYYEEHPEFIQPESRKNEMLNNFIKPGLEDLAVSRTTFSWGIPLKNDPKHVVYVWID ALSNYITALGYGSEDDSLFQKYWPANVQMVGKEIVRFHTIYWPIMLMALDLPLPKKVFGH GWLLMKDGKMSKSKGNVVYPEMLVERYGLDALRYYLLRAIPFGSDGVFTPEDFVSRLNYD LANDLGNLLNRTIAMINKYCDGKVPAYASKVTPFDSELSTTAANVIGKYHEAMEKMEFNT AIAEIWTLVSRANKYIDETAPWVLAKEEEKRNELESVMIHLAESLRIVAILLQPVMTETP GKIFEQLGLDPETMNMENIHFGEFPTDVTVTSKGTPIFPRLEIETEVTYIQKKMSQSESA TEEDIKWNPEETTLVSTKEKQIKYDDFDKVELKVAEVIDCKKVKGADKLLQFRLDAGDEN HRQILSGIAEFYPDPAALIGKKVVIVANLKPRKMRGQISQGMILSAESPEGKLQIVEAPK EMPNGAGIA >gi|284795511|gb|ADDQ01000038.1| GENE 87 95506 - 95781 138 91 aa, chain + ## HITS:1 COG:no KEGG:EF0931 NR:ns ## KEGG: EF0931 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 91 1 91 91 124 100.0 8e-28 MAYHKFKFYEQRKNDPKWRPYYLEAMRVREQARLTVQRRKRRARIRTFLVVAILVILVFL LLAHWTYSQTNELSFSSFIDVLKSKINEFLN >gi|284795511|gb|ADDQ01000038.1| GENE 88 95840 - 96445 560 201 aa, chain - ## HITS:1 COG:no KEGG:EF0932 NR:ns ## KEGG: EF0932 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 201 1 201 201 300 98.0 2e-80 MKQSPDLENFLKTSIQKIVTIERKQQNQTIWHWLLLILFGLLTFGSLTQQLLLIGLFTLI AAIVKGPLMLVWGTIYSALVALFPPFALVLSLLFFIINLGTVMKSWRITLTSAYFYLIPL GFSLLKTTDWVSTPYFLTGLALLSILGLHFILEWLYKNNSLGRLLTWQIISVPFSLLLII LPSRLTKGRFGKKRIPKKVKL >gi|284795511|gb|ADDQ01000038.1| GENE 89 96566 - 98764 2314 732 aa, chain - ## HITS:1 COG:BS_yvgS KEGG:ns NR:ns ## COG: BS_yvgS COG3973 # Protein_GI_number: 16080398 # Func_class: R General function prediction only # Function: Superfamily I DNA and RNA helicases # Organism: Bacillus subtilis # 8 726 11 763 774 261 28.0 4e-69 MTDEKIFEQQHLTTVYHELQAAKKVYEEQLANTMKDGKHMLEEFGRDSKLNFDSYADNLE TFAMLEMKNREIDQWNLKNEATAKNLDKVKRLLQVPYFGKIGVTFEDSPEEPENFYIGVN DFTSLEEETRIHDWRSPIASLFYDNVLGKTAYTAHQQTIPVQLDLKRQLIIEKDQLINYF DTTIAIQDDVLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAI MQRIAYLLYQHRAEITADNILLLSPNSTFIDYISQVLPNLGERNPLNLTLLQFLRFTTKE AWPMEEETDYFERITRSEATEQEHVIRSKEFATFLLSNPEKAVVQPHFFRPLTFKKQTLF TSETIFKLYQETPADLSIRQRISATKEKLTSLWTRYLLKQAHSKKMLDQFQDLTEAEQVR YFGTVITEDNEKHLADFALKRLKKKYRSITAAIKNDAWLDQWAFFETFYSLFTEKSYQKE TAVFTADEIVALILVKHAFIENLANQQMAFILVDEVQDYTEAQLLLLLTLFPKASFTLAG DENQAIFNTAIEFSEAHDLLVNETSRSVGTYQLLNSYRSSKEITRLFQTLGTQPEQLTIV PIRHDGEKPTFIPCDSASDYLKAIVTSITTFDPKESTAIITKTFAEKEQLTKELSASLSL EEHPSLQVLSIDMAKGLEFDNVILHNPNVNRYSDNKRDKKIQYTAISRGMKRVVLPYTGT LSEWFTPYLAAQ >gi|284795511|gb|ADDQ01000038.1| GENE 90 98923 - 99693 997 256 aa, chain + ## HITS:1 COG:SPy0260 KEGG:ns NR:ns ## COG: SPy0260 COG0084 # Protein_GI_number: 15674440 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Streptococcus pyogenes M1 GAS # 2 255 21 274 274 320 61.0 2e-87 MIFDTHTHLNAEQFNDDIPETIAHAQELGVTEMAVVGFDEPTIEKSLLLSQEYANIYSII GWHPTEAGSYTPEVERRLQEQLTLPKIVALGEIGLDYYWMEDPKEVQEKVFRRQIAIARE MNLPFSVHTREALEDTYRILKDEKISDIGGIMHSFSGDAEWMKKFLDLGLHISFSGVVTF KKALDVQEAAMAVPLERMLVETDAPYLAPVPYRGKRNEPGYTRYVVEKIAELRQLTFEEV AEQTRVNAHRLFRIDK >gi|284795511|gb|ADDQ01000038.1| GENE 91 99702 - 100274 863 190 aa, chain + ## HITS:1 COG:BS_yabF KEGG:ns NR:ns ## COG: BS_yabF COG1658 # Protein_GI_number: 16077109 # Func_class: L Replication, recombination and repair # Function: Small primase-like proteins (Toprim domain) # Organism: Bacillus subtilis # 1 189 1 186 186 169 53.0 2e-42 MKVAEIIVVEGKDDTRRIQEVVAADTIETIGSAINDEILTQIEHAQETRGVIIFTDPDYS GEKIRKTIMEVVPDAKHAFLSRKVAVPKKNGGSLGVEHASDEAIIEALKKVVTPVQAGED YQEIPRQTLVEYGLIAGANAKKYRELLGDDLRIGYTNSKQLVKRLSMFRITEAELKESMT RILKELANEE >gi|284795511|gb|ADDQ01000038.1| GENE 92 100293 - 101180 921 295 aa, chain + ## HITS:1 COG:SPy0262 KEGG:ns NR:ns ## COG: SPy0262 COG0030 # Protein_GI_number: 15674442 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Dimethyladenosine transferase (rRNA methylation) # Organism: Streptococcus pyogenes M1 GAS # 7 291 3 287 290 352 63.0 5e-97 MTDYKEIATPSRTKEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPG IGALTEQLAMNAAQVVAFEIDDRLIPVLADTLSRYDNVTVVHQDVLKADLVETTNQVFQE KYPIKVVANLPYYITTPIMMHFLESSLDVAEMVVMMQKEVADRIAAKPGTKAYGSLSIAV QYFMEASVAFIVPKTVFVPQPNVDSAIIKLTRRATPAVTVTNEKEFFKLTKASFQLRRKT LWNNLTHFYGKDEQTVAWLKESLAEAEIDPSRRGETLSLEEFARLSNALEKNKPV >gi|284795511|gb|ADDQ01000038.1| GENE 93 101308 - 101925 685 205 aa, chain + ## HITS:1 COG:no KEGG:EF0937 NR:ns ## KEGG: EF0937 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 205 1 205 205 327 99.0 1e-88 MKTNSVKRLTISALLIAMGIIIPMVMPRITIGPASFTLASHVPVFIAMFISPVVAIAVSL GTGFGFFLSATPIIALRALSHLIFAVIGAVILQKHPEILINKEGKFTLLNGKLQLFNVGI GVIHSAAELVVVSVFYTMGNLPGTYYAAGFMYSIFLLMGVGGLIHSLVDFSIAYFLASTL SKHVDIPTFTEAKQPKVIKKKVKLA >gi|284795511|gb|ADDQ01000038.1| GENE 94 101975 - 103078 1487 367 aa, chain - ## HITS:1 COG:SPy1976 KEGG:ns NR:ns ## COG: SPy1976 COG3839 # Protein_GI_number: 15675768 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Streptococcus pyogenes M1 GAS # 1 367 1 377 377 521 68.0 1e-148 MVEMALRNVYKKYDNAEHYSVTDFNLEITDREFIVFVGPSGCGKSTTLRMIAGLEDITEG ELSIGDKVMNDVAPKDRDIAMVFQNYALYPHMTVFDNMAFGLKLRKYDKAEIKKRVENAA DILGLTEYLQRKPAALSGGQRQRVALGRAIVRDAKVFLMDEPLSNLDAKLRVAMRAEIAK LHQRLETTTIYVTHDQTEAMTMADRIVIMKDGFIQQIGSPKEVYNTPKNMFVAGFIGSPA MNFFKVTLNNGVISNQHGLKLAIPEGRNKELVEHGYEGKELIFGIRPEDIHSEQVALTAM KDAVIKSEVVVSELLGAESMLYTKIGDTEFISKVDARDFHHPGEMIDLAFDINKGHFFDP QTEEVIK >gi|284795511|gb|ADDQ01000038.1| GENE 95 103264 - 103686 501 140 aa, chain + ## HITS:1 COG:lin2020 KEGG:ns NR:ns ## COG: lin2020 COG1803 # Protein_GI_number: 16801086 # Func_class: G Carbohydrate transport and metabolism # Function: Methylglyoxal synthase # Organism: Listeria innocua # 1 129 1 129 134 204 76.0 4e-53 MKIALIAHDRKKTLMIKLATAYKHILEKHELYATGTTGMKVMEATGLPVHCFKSGPLGGD QQIGAMISEDNIDLVIFLRDPLSAQPHEPDVTALIRLSDVYEIPLATNIGSAEILLRGVE AGFADFREVIHEGDRRPLAF >gi|284795511|gb|ADDQ01000038.1| GENE 96 103960 - 104499 586 179 aa, chain + ## HITS:1 COG:no KEGG:EF0940 NR:ns ## KEGG: EF0940 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 179 1 179 179 297 100.0 1e-79 MTKKKFGTKSIALMGVLIAVVVVFSRFFAYETTFLKISFTFIPESLIGMIFGPFWAGIGT AVADVVGMLLFPKAGYFPGFTLNAFLAGAIYGYFYYKKEMTWQRVILATLLVTVLINIIL TPLWLSLMYGVNLANFAWWVPRLIKTVIFFPIQVIATYYLGNKIPFKRLFGKPLSELDQ >gi|284795511|gb|ADDQ01000038.1| GENE 97 104551 - 106317 212 588 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 348 572 132 356 398 86 28 7e-16 MQTKKIHFGAFSRFKPYLLRYPKEIIGALILGILSGFSTVLMTYYIGKSVDTMVGKGQVN AAQLIKILGLLAGILLVTVLSQWLIQRLGNRVSYLSTTQLRKDAFAHLNQLPLSYYDQTS HGNIVSRFTNDIDNISMACSAVFNQLFSGMATVVVALLFMIRLSPLLTLVVLISTPIIFI VNWLVAKASQKNFAAQQTIVGEISGFVSEMVGNQKIVKAFQQEQATQETFEALNQTLYEK GQKAQFSSSLTNPLSRFIDHLSYLSIGLVGGLLVLSGNPLVTVGVISSFTIYSSQFSKPF IELSGITNQIQAALAGLERTFDMMDQPVERPDVPNAIVLKEARGRVEFKDVDFSYTPTRP LIENFNLIAEPGETIAIVGRTGAGKSTLVNLLMRFYEVDHDQITVDTHDITQITRDSLRK SFGMVLQDTWLFDSSIRENLTYGNPEASDEEIIEAMKKAHIFDFVMRLPQGLDTQIGSQG VKISEGQRQLMTIARTMISNPPMLILDEATSSVDTLTEQKIQDAFLQMMTGRTSFVIAHR LATIKSAEKILVMDNGQVVEIGTHDELLQKEQGYYRDLYEAQFNQKAQ >gi|284795511|gb|ADDQ01000038.1| GENE 98 106307 - 108034 182 575 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 347 555 19 224 305 74 27 2e-12 MFGLLKYAKNYRKQIILGPVFKFLEACFELVLPLFMAHLVDVGIRQNDRQTVIEMALWML VMSLVGLFFVMICQYYASVASQGFGTELRNQLMKKINQLSHKELNSFGTDTLITRITNDI NQLQLALAMFIRLVIRTPFLSIGSVVMAFYIDVQMGFLFLLLLPIFSLILFIIIKVTVPL YQKVQEYLDRLNRQISQNLSGVRVIRAFARKETEQRHVDKASDDLGDIYIRVSNVSALLT PLTTLIMNVGILFLLYFSGLKVSFGSLQQGEVLALINYMNQMMLALIVASNLVVIFTRAA ASANRVNAVLTVESQLTDTPESAKTSPQFGDITFDHVDFRYEPEAGLALENINFTIPKGS ILGITGPTGSGKSTLTQLIPRFYDVSAGNLFINGINVRDWPLFTLRQQVASVPQTAVLFT GTIRENLQWGKPNATDEDCWEALAIAQCKEFVEQLDQGLDTPVNEGGKNFSGGQRQRLTI ARALIRKPHLLILDDSLSALDYQTDLNLRRALQKERAETTVILISQRVSSIATANQILVL DSGKVAGLGTHEELLTSSKEYQEIVASQEEDTHAN >gi|284795511|gb|ADDQ01000038.1| GENE 99 108160 - 108927 591 255 aa, chain + ## HITS:1 COG:lin2818 KEGG:ns NR:ns ## COG: lin2818 COG4905 # Protein_GI_number: 16801879 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 4 235 3 249 270 198 37.0 9e-51 MEKMSQVILLFFIYSFIGWLWETVYCSLKAKKFVYRGFLVGPYCPIYGFGVLSVLYFVEP FENNLLVLYVGSAVLVTILEYVTSYGLEKLFHASWWDYHDVPFNLNGRVALPVSLFWGLG CVLIVKVIQPEIAKVVSFLQATFGNYLALCIVIVMGLDLIYTLLNMQGFKKLITEMGQTL ETNQQEFKQRLNTKMEIATADWQKLKERTKKEHFQNRLNFQQRRFINNYPKLTLKNIKNS KEVRHLLEDLKKKGQ >gi|284795511|gb|ADDQ01000038.1| GENE 100 109188 - 110396 1390 402 aa, chain + ## HITS:1 COG:lin0225_2 KEGG:ns NR:ns ## COG: lin0225_2 COG3584 # Protein_GI_number: 16799302 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 310 401 1 89 91 103 56.0 5e-22 MKVKKLIPFLTTMMLINFGLPVAAAAESLDSLQEKEAQAKQSGELISKEINSALDDVNAK YAEIERLKTQISKAEDTLKTSKEEIEKTEKNISRRKEAVGDRMKDIQLNGDQRTWQALLD AENLSDFFNRAYAMTVLQNFEREKIESLTSEKEKLAALQEKVENTQTTLKQNEEKLQVEA SSMNNKVSELKEKMANNEELLAQISTDKQKEQQRLVSEKAAAEAQKKRAAETAKAEAAKK QAAADKQAQADAAAKLEAEAAEKSSSQASSSSTSTESSSTESSSSASSSESSSTPESSTG ESSTPGTGSGRVLQMESTAYSWREAGASNLSATGIDLSKQSNVVAVDPSVIPLGSLVKVS GYGFAIAGDTGGAIQGNIIDVHFDSVDQCRLWGRRQVTVEIQ >gi|284795511|gb|ADDQ01000038.1| GENE 101 110493 - 111056 887 187 aa, chain + ## HITS:1 COG:lin0816 KEGG:ns NR:ns ## COG: lin0816 COG0454 # Protein_GI_number: 16799890 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Listeria innocua # 1 185 1 185 185 172 47.0 3e-43 MIRSATKEDGQAIARLVLVILKDMELPILEEVSEEQMIDLLAEATAYPTYRYGYQRILVY EHAGEVAGIAVGYPAEDEKIIDEPLREVFKKHGLAEDVRLFIEEETLPNEWYLDTISVDE RFRGMGIGSKLLDALPEVAKASGKQALGLNVDFDNPGARKLYASKGFKDVTTMTISGHLY NHMQKEV >gi|284795511|gb|ADDQ01000038.1| GENE 102 111102 - 111626 445 174 aa, chain - ## HITS:1 COG:BS_yxjI KEGG:ns NR:ns ## COG: BS_yxjI COG4894 # Protein_GI_number: 16080945 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 159 1 159 162 66 27.0 2e-11 MSEFFIQEQQLGKVTRTIVKDQAGRSLFLLVGRWGTRGDALSLYAMNGEILASIKQVSWT FGTRFELYQRFEKVGTLRKLFNLNADFYYVQGLHWAVVGDIKAHQYSIYQVHKKIMSMDK TMLCTGDYFVLTVANDEDAPLCICIAAVLDYWLYNKKKQKTSDDFGLDFDPLTD >gi|284795511|gb|ADDQ01000038.1| GENE 103 111678 - 112547 1053 289 aa, chain - ## HITS:1 COG:BH1746 KEGG:ns NR:ns ## COG: BH1746 COG0561 # Protein_GI_number: 15614309 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Bacillus halodurans # 2 281 1 277 282 172 38.0 5e-43 MIKLIASDMDGTLLDAKMSITNDNASAIREAERLGIEFMVATGRAYTEAKPALEEAGIDC AMITLNGAQVFDKDGHSLFTAGIEKETVTEVLTILSQHNVYYEISTNKGIFSEHQEKRIE NFAAHIAESMPHLTYKVAIAMASAHLSLLHITYVDRLDDILKDDSIEVLKIIGFSMDGPK VLGPAGMEVEELDDLVVTSSALNNIEINHRLAQKGIAVARVAKERGIPAEQVMTIGDNLN DVSMIQWAGVSFAMGNAELELKEYAKYETATNLENGVGEAILRAIREDL >gi|284795511|gb|ADDQ01000038.1| GENE 104 112681 - 113361 811 226 aa, chain + ## HITS:1 COG:BS_ung KEGG:ns NR:ns ## COG: BS_ung COG0692 # Protein_GI_number: 16080848 # Func_class: L Replication, recombination and repair # Function: Uracil DNA glycosylase # Organism: Bacillus subtilis # 1 220 1 220 225 310 68.0 1e-84 MKEIIHNSWQTVLSAEFEKPYYQELREFLKKEYQTQTIYPDMYHLFSALELTPFEEVKVV ILGQDPYHGPNQAHGLSFSVQPGVKVPPSLANIYKELQADLGYQPVNHGFLESWAKQGVL LLNTVLTVRAGQAYSHRGKGWEQLTDVIIEKLNAREKPVVFILWGRPAQEKIKMIDTTRH VIIKSPHPSPLSAHRGFFGSRPFSQANAALERLGETPIDWQLPETV >gi|284795511|gb|ADDQ01000038.1| GENE 105 113517 - 114500 1178 327 aa, chain + ## HITS:1 COG:L107797 KEGG:ns NR:ns ## COG: L107797 COG0280 # Protein_GI_number: 15673641 # Func_class: C Energy production and conversion # Function: Phosphotransacetylase # Organism: Lactococcus lactis # 1 324 1 325 326 421 67.0 1e-117 MELFDSLKFKVVRRNIKIVFPEATDPRILGAAARLKSDELVEPILIGDPTDIANAAMARG INTSNFIIINPNDYEKWDEMVEAFVERRNGKATKEDAEKILKDVNYFGTMLTYMGIADGM VSGAIHSTGDTVRPALQIIKTKPGVSRTSGAFLMIRGRDQERYLFSDCAINVNPTAQELA EIAVDSAKTAELFDIEPKVSLLSFSTKGSAKAPEVTKVAEATKIAQELAPEYAIDGELQF DASYVSSVAQLKAPNSKVAGEATVFVFPDLQSGNIGYKIAQRLGNFEAIGPILQGLNKPV SDLSRGANEEDVYKLSIITAAQTLMND >gi|284795511|gb|ADDQ01000038.1| GENE 106 114657 - 115136 608 159 aa, chain + ## HITS:1 COG:BS_ydiB KEGG:ns NR:ns ## COG: BS_ydiB COG0802 # Protein_GI_number: 16077658 # Func_class: R General function prediction only # Function: Predicted ATPase or kinase # Organism: Bacillus subtilis # 7 139 10 140 158 149 55.0 1e-36 MNIVLNNPLETEAIAKIIGQKAQAGDVIVLTGDLGAGKTTMTKGIALGLGISQMIKSPTY TIIREYPQGRLPLYHMDVYRVEEGADELGLDEYFEGDGLSVVEWGSLIEEELPEDYLEII LNKDSQEADKRVLEFRGTGPLAEERIAEILKTWEAREYD >gi|284795511|gb|ADDQ01000038.1| GENE 107 115129 - 115650 216 173 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229236145|ref|ZP_04360568.1| acetyltransferase, ribosomal protein N-acetylase [Chitinophaga pinensis DSM 2588] # 4 164 9 170 181 87 28 2e-16 MTEQTFSIREAVPTDADQLLSVMSKIGSETPYLIMDERGMAMSTTELAENLATLYESPNN VLLVALAGEAIIGTASVSASSKKRMEHIGEIGISILKEYWGYGLGSILMEELIRWARESH VIRRLELTVQDRNQRAIHVYKKIGFETEAIMPRGAKTDQGEFLDVHLMRLLID >gi|284795511|gb|ADDQ01000038.1| GENE 108 115820 - 116029 289 69 aa, chain + ## HITS:1 COG:no KEGG:EF0953 NR:ns ## KEGG: EF0953 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 69 1 69 69 105 98.0 7e-22 MAKATKMNVNYRESILDRAYRLELIKKDEYVKHQEKLSLLNEKLSDGEPAQFDAKEETFW KKISQKVIL >gi|284795511|gb|ADDQ01000038.1| GENE 109 116103 - 117113 1041 336 aa, chain - ## HITS:1 COG:SPy1293 KEGG:ns NR:ns ## COG: SPy1293 COG1609 # Protein_GI_number: 15675246 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 3 332 2 334 339 282 45.0 5e-76 MAITVKDVAKKAGVATSTVSRVINDHPSISESTKKKVRKVMDDLGYVPNMTARNLGKRIS SAIGVILPPLDSKERLGNPFYLEIMEAINEEARLYDMTTAIATAKSFDVLLENVKRMHLQ KQVDGFILVYSDSKDPVIDYLYENNIPFTLIGQPYQHETEIVYVDNDNQLLGKQATEFLI ENGHKNILFVTNTTHESLYFERYFGYQKAMMMQGLTVLPSVALEKPEDYMAFDDILHQNN ATALVVIDDIFALRTMQLAQIYGYQVPETLSIISFNNSIFSTLTHPYLTSIDIDTSELGR MAMKKLYELIHEELTNGVRLVIPHKLIKRETVIPIH >gi|284795511|gb|ADDQ01000038.1| GENE 110 117137 - 118144 332 335 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900011|ref|NP_344615.1| aldose 1-epimerase [Streptococcus pneumoniae TIGR4] # 27 331 29 341 345 132 29 8e-30 MKDNRITVTDIPNTNLKKITLKNDFLEVVLLNYGARLHQLLMPNKNNHWENILLSYDSYQ DVLKDQSFFGATVGPVAGRIRNGHWQNGILEQNSDGHHIHGGSKGWSFQYWTVEPFEKKD IIGVTFHLTDTTSGYPGPIEATITYQLEDNHLRMISTGRSKQETFFNPTNHAYFNLSGDG KLDILSHLLSLNCQGMLELDDNKLPTGQILPASELSIRFNELTPIETILQRYPTGLDDVF SLVGSDLRQPQLCLQEPTSGRKMTIATTNQSMVLFSTTGFEAPFSINGQAMHSNYGLAIE PQEYPDIVHHPQWGSILLPANKKQTYQTVYQFNLL >gi|284795511|gb|ADDQ01000038.1| GENE 111 118134 - 118802 707 222 aa, chain - ## HITS:1 COG:L0001 KEGG:ns NR:ns ## COG: L0001 COG0637 # Protein_GI_number: 15672411 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Lactococcus lactis # 1 221 1 220 221 275 64.0 4e-74 MFKGVLFDLDGVITDTAEFHYHAWKKLGNEIGISIDRVFNEQLKGVSREDSLQLLLKYGK KEGTFSSEEFAQLAQRKNDYYLEMIQAITPEDVYPGILSLLTELREANIKIALASASKNG PFLLEKMQLTPLFDAIANPADVQAGKPAPDIFILAAKEIDLTPAECLGIEDAKAGIQAIL ASGAQPVGVGRKEELGEGLPIVPETSALTFDYLKKVWLDHEG >gi|284795511|gb|ADDQ01000038.1| GENE 112 118795 - 121089 2158 764 aa, chain - ## HITS:1 COG:NMB0390 KEGG:ns NR:ns ## COG: NMB0390 COG1554 # Protein_GI_number: 15676304 # Func_class: G Carbohydrate transport and metabolism # Function: Trehalose and maltose hydrolases (possible phosphorylases) # Organism: Neisseria meningitidis MC58 # 6 759 4 752 752 939 63.0 0 MKQIKRLFQIDPWKIRTTHLDKENLRLQESLTSIGNGYMGMRGNFEEYYSGDHHQGTYLA GVWYPDKTRVGWWKNGYPEYFGKVINAINFIAMDLQIDGQTIDLATTPYEDFSLELDMQN GVLSRQFTIQTPKNKVRFSFERFLSLEKKEAAYIHLTIEMLEGTGTITLHSKLDGDVQNE DSNYEEHFWEEMAIETQETLGFVTTKTIPNNFEIERFTVTAGMRHFIDGASVVPTYTQQP LALTAELTVSLNEGETTAITKEVLVVTSRDVPETQQITRVNELFAEMTTLYPEAKAGQAA AWAKRWQLADVVIEGDDEAQQGIRFNLFQLFSTYYGEDDRLNIGPKGFTGEKYGGATYWD TEAYAVPLYLALAKPEVTKNLLKYRHNQLPQAIHNAQQQGLKGALYPMVTFTGVECHNEW EITFEEIHRNGAIAYAIYNYVNYTGDEDYLKDAGLEVLVAIARFWADRVHFSQRHNQYMI HGVTGPNEYENNINNNWYTNTIAAWVLRYTRESYLKFQEETTLKIADDELAKWADIVENM YFPVDNELGIFVQHDTFLDKDLMPVSDLPLSELPLNQHWSWDKILRSCFIKQADVLQGIY FFNDAFSLEEKRRNFNFYEPMTVHESSLSPSIHAVLAAELGMEEKAVEMYQRTARLDLDN YNNDTEDGLHITSMTGSWLAIVQGFAQMKTDHQQLKFAPFLPATWTAYSFHINYRNRLLF VEVAADQVAFTLLDGPAIPLTVYDQKYTLKDRLVLPIRKEEVHV >gi|284795511|gb|ADDQ01000038.1| GENE 113 121370 - 123538 2609 722 aa, chain + ## HITS:1 COG:SPy1986_1 KEGG:ns NR:ns ## COG: SPy1986_1 COG1263 # Protein_GI_number: 15675776 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Streptococcus pyogenes M1 GAS # 2 454 6 457 472 656 71.0 0 MKKMFSFEFWQKFGKALMVVVAVMPAAGLMISIGKSLPLIDPNLGLLVTTGGVLESIGWA IIGNLHLLFALAIGGSWAKDRAGGAFAAGISFVLINRITGAIFGVTNEMLADEQAFTHTL FGTKIMVKGFFTSVLEAPALNMGVFVGIIAGFVGAMAYNKYYNYRKLPDALSFFNGKRFV PFVVILWSTIVSIALALIWPNIQAGINNFGLWIAQSQDSAPILAPFLYGTLERLLLPFGL HHMLTIPINYTQLGGTYEILSGAQAGTQVFGQDPLWLAWATDLVNLKGAGDMSKYQFVLE NWTPARFKVGQMIGSSGILMGMALAMYRNVDADKKAKYKSMYFSAALAVFLTGVTEPLEF MFMFAAVPLYVIYAVIQGAAFAMADILPLRVHSFGNIELLTRTPLAIKAGLGGDLINFVL MVIIFGVVTYFLANFLIKKFNYATPGRNGNYDNDNGEEIASGAAGSGVVDQQIAQIVYLL GGKQNIKEVDACMTRLRVSVKDREKVGSEEAWKRAGAMGLIVKDNGVQAVYGPKADVLKS DIEDLLASGVDIPEPVIAESTAGVPTTNFLGKKKDFVAVATGEVIPMAQVNDPVFSQKMM GDGFAVKPLEGEVVAPISGKVLSVFPSKHAIGLQTEEGIEVLVHMGIDTVEMATPAFESF VKEGQSLKAGTKLAKMNLDVIEQAGKETTIIVAFTNSDKVEQVVINQLGTTTAGTVIGQI EI >gi|284795511|gb|ADDQ01000038.1| GENE 114 123753 - 124577 801 274 aa, chain + ## HITS:1 COG:SPy1985 KEGG:ns NR:ns ## COG: SPy1985 COG3568 # Protein_GI_number: 15675775 # Func_class: R General function prediction only # Function: Metal-dependent hydrolase # Organism: Streptococcus pyogenes M1 GAS # 3 273 4 269 272 212 40.0 7e-55 MNLLTINTHSWLEEEPLKKLEEIAKVILSSESEIIALQEVNQKVASKKVPLEQLTTFCPI ATQTPIHEDNFAYLIVQYLAEKGQNYYWSWEMSHIGYAIYEEGNALLSKCPLTSEALLIS ESQEPTNYRTRKILVAETESSKGTLTVVSGHFSWWETPCTGFAYEWLQLEKYLATGQQPL VILGDLNNPAGTTGYQLVENSYLPIQDAFVVAEETSGEATVEKKIDGWEENEAALRIDYA FVPKQWHVRKYEVIFDGRKTPIVSDHFGLLIQLK >gi|284795511|gb|ADDQ01000038.1| GENE 115 124637 - 125452 1050 271 aa, chain - ## HITS:1 COG:L135991 KEGG:ns NR:ns ## COG: L135991 COG0345 # Protein_GI_number: 15673866 # Func_class: E Amino acid transport and metabolism # Function: Pyrroline-5-carboxylate reductase # Organism: Lactococcus lactis # 3 267 4 262 262 179 42.0 5e-45 MKISFIGAGNMASAIAKGALKKQFIAAENLYFYDIQVEKTAAFAQEIGAHAVALPQEAIT VADLVILAVKPQFVQAALLEAKEAILDKQPLIVSIAAGTTIAELYQLFETTQPLRLVRVM PNMNALIGAGAAAVCGNAFASPEDIQTVLSLFRAVGQAWELEEQYFSIFTAIAGSTPAYA FLFIDSIARAAVKNGMNKELALEIATQAVLGSAQTLANSTENPWTLIDQVSSPGGTTVAG IVELENNAFISTVIKGIEATILRDQELAKQD >gi|284795511|gb|ADDQ01000038.1| GENE 116 125579 - 126529 667 316 aa, chain + ## HITS:1 COG:BH3679 KEGG:ns NR:ns ## COG: BH3679 COG4753 # Protein_GI_number: 15616241 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Bacillus halodurans # 190 309 141 254 257 85 41.0 1e-16 MASKEEQYAAFYQFLETLDCYLTTTNALENEVAQFKENPHREIAGFMLASSETIDVPKGF IRMLYCLEQDGYAYLDQQRCSFSAGQVMIVNEATSVSYQGQGMSMIIFYFKKHYFLDTLL NQLAEEPVMYRFFTEIASSEFENIPRYFVFASQPNSDVHVYSLLLLKQIVKMAYFNNKVT KAAFVLLVVELGQLPREALKMQDNYLSNHQRVEVILAYIEQQIAHVTLAEVAAKFHFHPN YLSNFLKEKTNKTFTEIVLAYRIQLAKNYLKQTDLSIQTIVERIGYQDKAFFYKRFKEEM GMTPKQYRQKEGMADV >gi|284795511|gb|ADDQ01000038.1| GENE 117 126522 - 126821 386 99 aa, chain + ## HITS:1 COG:no KEGG:EF0963 NR:ns ## KEGG: EF0963 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 99 1 99 99 147 100.0 2e-34 MYEEVFEEFQLTVVELPIEFVDDLPVYRGHLKELTFLSAEASSRKKLYQQLLQAYLLYRE ENQAVVEEEEITSSLLSTEQLLKYYDGETFDGFQLPSNE >gi|284795511|gb|ADDQ01000038.1| GENE 118 126838 - 127128 346 96 aa, chain + ## HITS:1 COG:BH3997 KEGG:ns NR:ns ## COG: BH3997 COG1694 # Protein_GI_number: 15616559 # Func_class: R General function prediction only # Function: Predicted pyrophosphatase # Organism: Bacillus halodurans # 6 96 10 101 101 108 64.0 3e-24 MDTMAKINQFRDERNWRPHHNEKDLALSICLEAAELLELFQWKTAEEGIKQEERIKEELA DVLIYSYMMADNLGFDLDEIIEEKLKKNAVKYPVPH >gi|284795511|gb|ADDQ01000038.1| GENE 119 127288 - 128001 385 237 aa, chain - ## HITS:1 COG:no KEGG:EF0965 NR:ns ## KEGG: EF0965 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: ABC transporters [PATH:efa02010] # 1 237 1 237 237 287 97.0 2e-76 MELKKTISNKIMIILIAIIVAIFAMGWILPIGIDKVTRLSYREYLFSTYTVFTQFGFLMF SFLVSFFINKEYSGKTILFYRMMNTNSLTFYIKKVLTLTVETLGSILVLLFIVSFIFMDF SVILQMFFLLSMISIQYILIVALISFLSANVLLSIGFSILYWITTVLFVAVGGFLRFFAI FDASNELYLNVQNFLEGSENSISFDHNLLIILYIIVLTIIALAIARVNNKRWLRLGI >gi|284795511|gb|ADDQ01000038.1| GENE 120 128006 - 128638 462 210 aa, chain - ## HITS:1 COG:Cgl0491 KEGG:ns NR:ns ## COG: Cgl0491 COG1120 # Protein_GI_number: 19551741 # Func_class: P Inorganic ion transport and metabolism; H Coenzyme transport and metabolism # Function: ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components # Organism: Corynebacterium glutamicum # 2 191 5 215 264 62 24.0 5e-10 MLELNDYILKINNKLLLEHTKVSFRKGVINHILGKNGVGKSQFAKDLLLNRSGLIPSEIS KNVTIISSFSNVPNDLKVCELFILLEKRFGLDSVAHLAHSLHATNISKTSLIGQLSDGQK QKLKLLSFFLEDKSIIVLDEITNALDKQTINEIYLFLLAYIKNHPKKIILNITHNLSDLK NLKGNYYLIEDFKMIRFTNQTEVIQKYIEG >gi|284795511|gb|ADDQ01000038.1| GENE 121 128649 - 128798 91 49 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|257086304|ref|ZP_05580665.1| ## NR: gi|257086304|ref|ZP_05580665.1| conserved hypothetical protein [Enterococcus faecalis D6] # 1 49 202 250 250 77 97.0 2e-13 MLNSDGYKVLITLFSVDELENKRKNHLIVKLIQAISLLLVIETVISWFV >gi|284795511|gb|ADDQ01000038.1| GENE 122 129146 - 129922 746 258 aa, chain + ## HITS:1 COG:all0345_1 KEGG:ns NR:ns ## COG: all0345_1 COG0789 # Protein_GI_number: 17227841 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Nostoc sp. PCC 7120 # 1 113 21 133 135 70 32.0 3e-12 MYQIGQFAKLMDISPRMLRHYEKAGIFVPNEIDKKTGYRYYSAHQIPLLKQILLLRDSGF KVEEMAETLRKLKDASFLETILLRKRDQSRHLIQMEEQKIKKINQQLVALKEEKQMIKGT EIDFIVSDSLKALALYKKVFEIEVVEATEYPVGMNEAVFQLYGTRFHMLDANEEYGLKSP TQEHPNTIWFNITVENIEETHQLAMENGCQEVQPITEMMEGALKNSLFIDPYGYMWMLHQ IYQELSFDERIEILENEL >gi|284795511|gb|ADDQ01000038.1| GENE 123 130064 - 130264 75 66 aa, chain + ## HITS:1 COG:no KEGG:EF0967 NR:ns ## KEGG: EF0967 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 41 565 605 630 93 100.0 2e-18 MRFAYGNVSIAKFLASSRSDRQLKKTSMYANRHDWWVTSNEGSSDDGSGDSFGGGSFGGG GGTSSW Prediction of potential genes in microbial genomes Time: Sun May 15 12:52:44 2011 Seq name: gi|284795510|gb|ADDQ01000039.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont79.2, whole genome shotgun sequence Length of sequence - 15426 bp Number of predicted genes - 32, with homology - 29 Number of transcription units - 8, operones - 5 average op.length - 5.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) - TRNA 47 - 120 76.2 # Arg TCT 0 0 + Prom 217 - 276 6.3 1 1 Op 1 14/0.000 + CDS 388 - 696 518 ## PROTEIN SUPPORTED gi|29375551|ref|NP_814705.1| 50S ribosomal protein L21 2 1 Op 2 14/0.000 + CDS 729 - 1073 564 ## PROTEIN SUPPORTED gi|29375552|ref|NP_814706.1| hypothetical protein EF0969 3 1 Op 3 . + CDS 1086 - 1373 485 ## PROTEIN SUPPORTED gi|29375553|ref|NP_814707.1| 50S ribosomal protein L27 + Term 1381 - 1425 9.0 - Term 1369 - 1411 1.0 4 2 Op 1 . - CDS 1461 - 2615 591 ## COG0582 Integrase 5 2 Op 2 . - CDS 2681 - 3148 257 ## gi|256854185|ref|ZP_05559549.1| predicted protein 6 2 Op 3 5/0.000 - CDS 3190 - 3630 373 ## COG2856 Predicted Zn peptidase 7 2 Op 4 . - CDS 3681 - 4106 415 ## COG1396 Predicted transcriptional regulators - Prom 4268 - 4327 6.8 + Prom 4122 - 4181 6.5 8 3 Op 1 . + CDS 4341 - 4541 243 ## SPH_0074 repressor 9 3 Op 2 . + CDS 4554 - 4838 373 ## gi|256617844|ref|ZP_05474690.1| predicted protein 10 3 Op 3 . + CDS 4853 - 5575 823 ## COG3646 Uncharacterized phage-encoded protein + Term 5614 - 5657 -0.3 - Term 5578 - 5608 1.3 11 4 Tu 1 . - CDS 5609 - 5791 160 ## EF2036 hypothetical protein - Prom 5827 - 5886 7.0 + Prom 5714 - 5773 6.8 12 5 Op 1 . + CDS 5844 - 6038 208 ## gi|256960105|ref|ZP_05564276.1| predicted protein 13 5 Op 2 . + CDS 6111 - 6518 608 ## MGAS2096_Spy0562 phage protein 14 5 Op 3 . + CDS 6531 - 7274 873 ## MGAS2096_Spy0563 phage protein 15 5 Op 4 . + CDS 7347 - 7670 404 ## gi|256960108|ref|ZP_05564279.1| predicted protein 16 5 Op 5 . + CDS 7670 - 7783 200 ## 17 5 Op 6 . + CDS 7850 - 8104 319 ## gi|256960109|ref|ZP_05564280.1| predicted protein 18 5 Op 7 . + CDS 8088 - 8765 665 ## LM5578_2513 hypothetical protein 19 5 Op 8 . + CDS 8708 - 9688 870 ## JDM1_0973 hypothetical protein 20 5 Op 9 . + CDS 9787 - 10365 313 ## PEPE_1020 hypothetical protein 21 5 Op 10 . + CDS 10369 - 11175 441 ## EF2027 hypothetical protein 22 5 Op 11 . + CDS 11172 - 11474 316 ## gi|256853542|ref|ZP_05558908.1| predicted protein 23 5 Op 12 . + CDS 11475 - 11774 421 ## SH1788 hypothetical protein 24 5 Op 13 . + CDS 11792 - 12217 291 ## COG4570 Holliday junction resolvase 25 5 Op 14 . + CDS 12217 - 12402 188 ## gi|256960117|ref|ZP_05564288.1| predicted protein 26 6 Tu 1 . - CDS 12469 - 12582 77 ## - Prom 12606 - 12665 2.2 + Prom 12448 - 12507 2.3 27 7 Tu 1 . + CDS 12642 - 13364 608 ## Rmet_6243 hypothetical protein + Prom 13397 - 13456 3.1 28 8 Op 1 . + CDS 13514 - 13864 344 ## gi|256960120|ref|ZP_05564291.1| conserved hypothetical protein 29 8 Op 2 . + CDS 13865 - 14143 334 ## EF2120 hypothetical protein 30 8 Op 3 . + CDS 14155 - 14367 237 ## gi|256960122|ref|ZP_05564293.1| predicted protein 31 8 Op 4 . + CDS 14370 - 14906 578 ## EF2118 hypothetical protein 32 8 Op 5 . + CDS 14907 - 15056 133 ## + Term 15104 - 15137 3.1 Predicted protein(s) >gi|284795510|gb|ADDQ01000039.1| GENE 1 388 - 696 518 102 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375551|ref|NP_814705.1| 50S ribosomal protein L21 [Enterococcus faecalis V583] # 1 102 1 102 102 204 100 4e-52 MYAIIKTGGKQVKVEVGQAIYVEKLNVEAGEKVVFDEVILVGGESTKVGAPTVAGATVEG TVEKHGKQKKVVTFQYKPKKHSHRKQGHRQPYTKVMIEAINA >gi|284795510|gb|ADDQ01000039.1| GENE 2 729 - 1073 564 114 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375552|ref|NP_814706.1| hypothetical protein EF0969 [Enterococcus faecalis V583] # 1 114 1 114 114 221 100 2e-57 MIKGSFKRTGSGRIVSFELTGHAEAGPYGSDVVCAAVSALAISTVNGIDALAGFEPIVEV DDVEGGYLYVEMLTTVNQEQKNIAQILLENLLLGLQSIENENTEFIQIKTITEK >gi|284795510|gb|ADDQ01000039.1| GENE 3 1086 - 1373 485 95 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375553|ref|NP_814707.1| 50S ribosomal protein L27 [Enterococcus faecalis V583] # 1 95 1 95 95 191 100 3e-48 MLLTMNLQLFAHKKGGGSTSNGRDSESKRLGAKSADGQTVTGGSILYRQRGTKIYPGVNV GIGGDDTLFAKVDGVVRFERKGRDKKQVSVYPVAN >gi|284795510|gb|ADDQ01000039.1| GENE 4 1461 - 2615 591 384 aa, chain - ## HITS:1 COG:L48477 KEGG:ns NR:ns ## COG: L48477 COG0582 # Protein_GI_number: 15672029 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Lactococcus lactis # 4 384 3 394 394 247 35.0 2e-65 MAMIKQYKKKNGEKAWYFKTYLGTDPLTGKKKYTTKRGFRTQKEAKIALARLEMEIQKNG IPSSTNITFQEVAFMWLENYKNTVKESSYSRTEIIFRKHILPSFGKIEISKISTAYCQKI VNTWHSKGSSKQYPLFINYMNQVFKFAINIGVTNQNPVINVIVPKNQDIITSEKKIKFYT KDQLQIFLKSIEQSESTYITIRDYTLFRLLAFSGCRIGELLALTWDDLNIKTGELQINKT IAKSDHYYVSNTPKTKKSNRTLILDAKTITILKKWKLEQKKYLLKLGYTQPSRIFTNEEN EFTINQAITDRYNIYRKKANLPNIGLHGFRHTHASLLYYAGADHKEVQERLGHANIKTTL DTYTHLTNDGKEKTTEKLSKYIGF >gi|284795510|gb|ADDQ01000039.1| GENE 5 2681 - 3148 257 155 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256854185|ref|ZP_05559549.1| ## NR: gi|256854185|ref|ZP_05559549.1| predicted protein [Enterococcus faecalis T8] # 1 155 1 155 155 253 100.0 3e-66 MKKRNIIFSMLLSCLVLAACDSSNEYETDRQSSSIENNQETSSSVILEETYQTNSIYDNQ EKEVSSITEKQEQTLISYTQLDCEDRGYTLKYRGKDTWNVALNYINNKNRWIVTCNDVNY GRIKAIYEWDGEENSGATLIYLLVSGNELVNNLNN >gi|284795510|gb|ADDQ01000039.1| GENE 6 3190 - 3630 373 146 aa, chain - ## HITS:1 COG:lin1763 KEGG:ns NR:ns ## COG: lin1763 COG2856 # Protein_GI_number: 16800831 # Func_class: E Amino acid transport and metabolism # Function: Predicted Zn peptidase # Organism: Listeria innocua # 1 128 15 140 140 63 33.0 8e-11 MKKFNTKNPYELANYLGIHIDYDDLGKEFMGYRSHILRIPIIILNCNNTDQENFETCCHE LGHHCCGHDTNTQTLTRQGRNFTIYGVEYEANVFMVELLLHGINLAEYPTRECLLKSCGV PEWAERYVDWDYLKETADYNSYYSYY >gi|284795510|gb|ADDQ01000039.1| GENE 7 3681 - 4106 415 141 aa, chain - ## HITS:1 COG:lin1762 KEGG:ns NR:ns ## COG: lin1762 COG1396 # Protein_GI_number: 16800830 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 5 141 4 146 146 70 37.0 1e-12 MNTKDRIKQLAAQRKITIAELERKLHIANGTIGKWDKQNPSIEPLKKLADYFGVTTDYLL GRTDTLEFNKKDEKDVQLILEDLINGLSNENSLAFLKNGGVEIDEEDAELLRDSLERTVR RSKILAKEKFTPKKYRSNKAE >gi|284795510|gb|ADDQ01000039.1| GENE 8 4341 - 4541 243 66 aa, chain + ## HITS:1 COG:no KEGG:SPH_0074 NR:ns ## KEGG: SPH_0074 # Name: not_defined # Def: repressor # Organism: S.pneumoniae_Hungary19A_6 # Pathway: not_defined # 1 64 1 61 61 63 51.0 2e-09 MVYEKIKKLAIAKGVSIYRVERDAGLSNGAISKWGKTANQTPSSESLKKVAKYFKVSMEY LLEDEK >gi|284795510|gb|ADDQ01000039.1| GENE 9 4554 - 4838 373 94 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256617844|ref|ZP_05474690.1| ## NR: gi|256617844|ref|ZP_05474690.1| predicted protein [Enterococcus faecalis ATCC 4200] # 1 94 1 94 94 148 100.0 1e-34 MQLNIPDEMVQNELANNITFIVLKEIENRLNLLSKTIELPPYPNKSQVRKILEIGDEKLN NWISKGLKIQQWSNQDIRIERSELQRFLKETFEI >gi|284795510|gb|ADDQ01000039.1| GENE 10 4853 - 5575 823 240 aa, chain + ## HITS:1 COG:PM1774 KEGG:ns NR:ns ## COG: PM1774 COG3646 # Protein_GI_number: 15603639 # Func_class: S Function unknown # Function: Uncharacterized phage-encoded protein # Organism: Pasteurella multocida # 5 116 29 138 239 75 38.0 7e-14 MENLVITKNQQAVTTSLQVAETFNKNHRDVLAAIDDLKEGVAENYADLFYEDSYIHPQNK QKYRQIIMNRDGFTLLAMGFTGQKALKFKLKYIEAFNQMEELLKTQSNLPINNTELLLEA ALKHERGLTLVNQRLDKLETETTINRSQQRKIQGLVSSTVIKVLGGKKTSAYKDSSIKQS AFSNCYKQLKALFDVASYVDIPKVRYEEALTLIPKWKPDLELQARIDMANGNGDMFKEVS >gi|284795510|gb|ADDQ01000039.1| GENE 11 5609 - 5791 160 60 aa, chain - ## HITS:1 COG:no KEGG:EF2036 NR:ns ## KEGG: EF2036 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 60 1 60 62 79 88.0 3e-14 MFFVIKRASDKKYYFLIKTEENEIIASSKTYYYKSSVLEIIESIKNDMNPKAIIVDTTFN >gi|284795510|gb|ADDQ01000039.1| GENE 12 5844 - 6038 208 64 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256960105|ref|ZP_05564276.1| ## NR: gi|256960105|ref|ZP_05564276.1| predicted protein [Enterococcus faecalis Merz96] # 1 64 1 64 64 116 100.0 5e-25 MKAIRETRLIGAFLLMIVLGVLLKSHFSVPVLATISVPLFIRWFFNWDEAEYQHFQKKTK KAPL >gi|284795510|gb|ADDQ01000039.1| GENE 13 6111 - 6518 608 135 aa, chain + ## HITS:1 COG:no KEGG:MGAS2096_Spy0562 NR:ns ## KEGG: MGAS2096_Spy0562 # Name: not_defined # Def: phage protein # Organism: S.pyogenes_MGAS2096 # Pathway: not_defined # 1 125 1 123 140 94 45.0 1e-18 MSKNINVPLSGISEGGLQERFDYELAQVINNINDPNTDPTKKRKITIDLTIIPDEYREDI LIDYQVKSKLVPREALTSKIIIGQDGKGKPLANELKSGQRGQMYFDPDDSELKDDKGTPV EEIEETDKIKKFKTN >gi|284795510|gb|ADDQ01000039.1| GENE 14 6531 - 7274 873 247 aa, chain + ## HITS:1 COG:no KEGG:MGAS2096_Spy0563 NR:ns ## KEGG: MGAS2096_Spy0563 # Name: not_defined # Def: phage protein # Organism: S.pyogenes_MGAS2096 # Pathway: not_defined # 1 247 1 244 244 177 40.0 4e-43 MSEHLKEALAYAVRLRDDQKIIYKEEEKVFFDRSKADLVELDPIKRAETLTVNSLSGLIG YLQSKFSHEEVTSKLLIHVESPTNVAVYSALDADRKREKIIEAKALLEVFPYSRFMDSEE FIINVQSLIQRDLDAKAILECASAIRIEGGGDLVDNGVSQVATVKEGAATLTKAEVPSPA NLRPYRTFLEVEQPDSPFVFRINKYGHCALFEADGGIWKHVAMERIHEYLTQSLNEYVEK GSVTIIA >gi|284795510|gb|ADDQ01000039.1| GENE 15 7347 - 7670 404 107 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256960108|ref|ZP_05564279.1| ## NR: gi|256960108|ref|ZP_05564279.1| predicted protein [Enterococcus faecalis Merz96] # 1 107 1 107 107 184 100.0 2e-45 MNDKIQNLLMELVKECQKGEVALVLATVDPERMYLSSVLLAGSLPEQAIAFSELFETLKE KALAHDCDCPQCKQIKESFIGAESSSTKQNNEEKLDTLLKDFLRGEL >gi|284795510|gb|ADDQ01000039.1| GENE 16 7670 - 7783 200 37 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTRKEKLNQAKRLADLWYKQQKSQLYIAQQKERRGIA >gi|284795510|gb|ADDQ01000039.1| GENE 17 7850 - 8104 319 84 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256960109|ref|ZP_05564280.1| ## NR: gi|256960109|ref|ZP_05564280.1| predicted protein [Enterococcus faecalis Merz96] # 1 84 1 84 84 126 100.0 4e-28 MKVEFDSIGRIHLLDESSPYGSLIFEKDIENDHVAVYQDSEDEEVRFAFESLDECAYFKK SELIEGLEKVLSLLKEEERNEYLQ >gi|284795510|gb|ADDQ01000039.1| GENE 18 8088 - 8765 665 225 aa, chain + ## HITS:1 COG:no KEGG:LM5578_2513 NR:ns ## KEGG: LM5578_2513 # Name: not_defined # Def: hypothetical protein # Organism: L.monocytogenes_08-5578 # Pathway: not_defined # 5 139 4 130 219 77 37.0 3e-13 MNTCSENLEKLFDGMYKLKSKLTQPKFDAEVAYSTKKGAMNFQYATLKAIEEAIRKAAQE SESGIDFQQNVVNENNALKVTTIITHISGQYIIHGPFEFPDSGTNPQGLGSLTTYARRYS LSAAFGIAADKDDDGQTAAEKNSDTPKVNLISGKQLATLNDHIRQLSELSNSELDYVRNE LSKELNIDVNENMPASMFNKAIGVLRKWIQQFQPQPEENITWGQK >gi|284795510|gb|ADDQ01000039.1| GENE 19 8708 - 9688 870 326 aa, chain + ## HITS:1 COG:no KEGG:JDM1_0973 NR:ns ## KEGG: JDM1_0973 # Name: not_defined # Def: hypothetical protein # Organism: L.plantarum_JDM1 # Pathway: not_defined # 20 325 1 285 286 140 31.0 5e-32 MDTTIPATTRRKHYMGAKIMTNELTTDLQFNVDFKASEITIQNETQLAEMVDSAVSHYST MIFTDENIPEAKKARADLNKVATLLDDQRKAVKNQYNKPLKDFEKKIKKYMSQIEDVSDE INKNIQAYEEAERQKRLEKIQTVIDEMSENYNVSMEEIEISNSWLNKTSFTAKGEPTKKI IEEIASVMTTLANEKERIENDKKIIENYTKAVGLEPYSWVGLIDSGRTASELIKEIDSAF ALKKEQEEREKAKKEHDDAIAALKTETINNKTVDTETGEIITEEVPKTSRKQQEKTVTLR LTAEHQKLVALNNFIINNGIQVEVVE >gi|284795510|gb|ADDQ01000039.1| GENE 20 9787 - 10365 313 192 aa, chain + ## HITS:1 COG:no KEGG:PEPE_1020 NR:ns ## KEGG: PEPE_1020 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 4 192 31 220 225 143 40.0 3e-33 MYYGYDGPREVEIRFIDPRQFTAAQRNFIYALLGDISRETGDKTSLLKDMFYSHFEELRG YPMSLKKESKNTVDDATILANIILDYIFENSIPFKKGYDILPGNQEYYFYKCITKRVCCI CGKTSAEIDHFDKALGRRSRRKVDHTEYTFASLCHCHHKEKHDIGIKAFKAKYHVKGIKL NQETIKKLNIGG >gi|284795510|gb|ADDQ01000039.1| GENE 21 10369 - 11175 441 268 aa, chain + ## HITS:1 COG:no KEGG:EF2027 NR:ns ## KEGG: EF2027 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 10 267 11 285 285 259 65.0 5e-68 MERAFKGIWIPKNVWLDKELSWTEKFLIVEIDSLDNDDGCFASNEYFSNFFGLSKDRVSK LISGLKEKGYIDVSYQYKPGTKSIERRVVKITEGYRRKQLEGIGENNYRGIGENAKDNNT LINNTKNNTKNIYSVEQSSTMSELFEKVWKTYPKKTNKKKAKEQFLKKIKSDEDFERFKT GYKDYLKYIKLNDWYHPQELFRWIRDERFNDEYDLSETTTQARYTNPPVRQEQLPDWVNE PKQEEEKLSPEKQAELDRQIKEFLEGKS >gi|284795510|gb|ADDQ01000039.1| GENE 22 11172 - 11474 316 100 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256853542|ref|ZP_05558908.1| ## NR: gi|256853542|ref|ZP_05558908.1| predicted protein [Enterococcus faecalis T8] # 1 100 1 100 100 167 100.0 2e-40 MIEMRVLDYRITSDDKQVIVNKARRNEHGELTILTDKDGTQKESLALIGYYGNLSKALVA IERDYVLSSGKTIQTVKEYKKELESIHSKLKRELDFGEEF >gi|284795510|gb|ADDQ01000039.1| GENE 23 11475 - 11774 421 99 aa, chain + ## HITS:1 COG:no KEGG:SH1788 NR:ns ## KEGG: SH1788 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 99 4 102 104 103 55.0 2e-21 MNELVKLVEKWAKEKRLDKAEPEKQMLKVIEEVGEVGAALARNNENDLRDGIGDVVVTLI ILAMQNNMDLYECLNQAYSEIKNRQGKMVNGVFVKEADL >gi|284795510|gb|ADDQ01000039.1| GENE 24 11792 - 12217 291 141 aa, chain + ## HITS:1 COG:lin1248 KEGG:ns NR:ns ## COG: lin1248 COG4570 # Protein_GI_number: 16800317 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvase # Organism: Listeria innocua # 1 137 2 136 145 89 36.0 2e-18 MRIILPIEPKPQSRPRFARRGNYVQTYEDRAMKEYKNQVKNYLRKSRAKLIEKGPISAHV TFYIHPPKSALSNKQKRLEVELERKYCDKKPDLDNYFKAVTDAAEGILYKNDGQIAVMVC QKLYSMRPRTEIEIMSLEEQK >gi|284795510|gb|ADDQ01000039.1| GENE 25 12217 - 12402 188 61 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256960117|ref|ZP_05564288.1| ## NR: gi|256960117|ref|ZP_05564288.1| predicted protein [Enterococcus faecalis Merz96] # 1 61 1 61 61 92 100.0 1e-17 MGKKGKRIKKQNRKRKNAAIANGTYNWHEEKCLECKGKTLIKVEDEYGHAKEIPCPVCNK N >gi|284795510|gb|ADDQ01000039.1| GENE 26 12469 - 12582 77 37 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVDQTSTPFVYFFFISANFFATLCPLLLHNGQEVAFE >gi|284795510|gb|ADDQ01000039.1| GENE 27 12642 - 13364 608 240 aa, chain + ## HITS:1 COG:no KEGG:Rmet_6243 NR:ns ## KEGG: Rmet_6243 # Name: not_defined # Def: hypothetical protein # Organism: R.metallidurans # Pathway: not_defined # 2 221 25 254 297 160 38.0 3e-38 MKDLCGKRSMYDVFFDFTKMSACSISNVFDKVHFEEREKLYKSIQEKYTEEEQEKFHELF ALLVEALEETSTDILGELYMALEIANKDAGQFFTPYNVARLMAEMNFNEKDEQLKNGQPV VFYDPCIGGGVTLIALANIMREKGYNYQRSLRALCGDIDGNVLSMAYVQCSLLGIDAIFE RKNALSNEPATDVWFTPFYALNRAKEKETQNTLEILKEVMELLENKTSSSFTEPEQLSLF >gi|284795510|gb|ADDQ01000039.1| GENE 28 13514 - 13864 344 116 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256960120|ref|ZP_05564291.1| ## NR: gi|256960120|ref|ZP_05564291.1| conserved hypothetical protein [Enterococcus faecalis Merz96] # 1 116 1 116 116 197 100.0 2e-49 MSKQELVDKNEVLSIWHNYWESDKLAYEAEDELRELKTIICITELNENQQIVLDWLKESC KLHGLREVIEIMGFLSTTGGKMKYKQVAYAYGDLNDDELAQVLQSFSQWVWEQEEK >gi|284795510|gb|ADDQ01000039.1| GENE 29 13865 - 14143 334 92 aa, chain + ## HITS:1 COG:no KEGG:EF2120 NR:ns ## KEGG: EF2120 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 92 89 180 180 131 82.0 6e-30 MKFYEIKEPYFALIAAKDEKQCIKLYKDIVCDVEDEKEFFEEIKTIDKYEAFKMLAKSHT EEGDKTGAEEAFNQLENLEEKGEVLLIDGGLI >gi|284795510|gb|ADDQ01000039.1| GENE 30 14155 - 14367 237 70 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256960122|ref|ZP_05564293.1| ## NR: gi|256960122|ref|ZP_05564293.1| predicted protein [Enterococcus faecalis Merz96] # 1 70 1 70 70 128 100.0 1e-28 MSMSIQSGDKVKYIGKGVPQYTNQFLVVKTVLVNGLILEFPEEDKREVVLEDCGIWKEES LICGFDEVEE >gi|284795510|gb|ADDQ01000039.1| GENE 31 14370 - 14906 578 178 aa, chain + ## HITS:1 COG:no KEGG:EF2118 NR:ns ## KEGG: EF2118 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 110 1 110 184 135 76.0 8e-31 MNKQELIEELECLEVPTDSLDYLKGANYAVEKAISLAKQLDEPKKAILPKTADDFIEESL GMGSDKVDIIGSADSFSQEIPDDEFSLWFKSNRDLFVDALANGYEVKKEPLYYVELPDLR SSSSDNVYGLRKTLNGEIRIAVFDKQKVGKTKESQLTENQIKAVDERYWPFAVKLEEE >gi|284795510|gb|ADDQ01000039.1| GENE 32 14907 - 15056 133 49 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKDKKFSPLTIVCVIIGICWIVSIVGIGYFISHPEIIGHWFSRLISGFK Prediction of potential genes in microbial genomes Time: Sun May 15 12:54:20 2011 Seq name: gi|284795509|gb|ADDQ01000040.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont80.1, whole genome shotgun sequence Length of sequence - 9607 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 4, operones - 3 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 134 - 193 6.2 1 1 Op 1 . + CDS 293 - 1003 813 ## EF3155 hypothetical protein 2 1 Op 2 . + CDS 1100 - 1816 835 ## EF3153 hypothetical protein + Term 1824 - 1868 7.1 - Term 1819 - 1849 2.0 3 2 Tu 1 . - CDS 1857 - 2306 794 ## COG1970 Large-conductance mechanosensitive channel - Prom 2535 - 2594 7.7 + Prom 2357 - 2416 5.5 4 3 Op 1 14/0.000 + CDS 2515 - 3783 1193 ## COG0612 Predicted Zn-dependent peptidases 5 3 Op 2 3/0.000 + CDS 3776 - 5080 1459 ## COG0612 Predicted Zn-dependent peptidases + Prom 5106 - 5165 5.1 6 3 Op 3 5/0.000 + CDS 5248 - 6114 865 ## COG1426 Uncharacterized protein conserved in bacteria + Term 6126 - 6183 5.1 + Prom 6158 - 6217 6.6 7 3 Op 4 . + CDS 6239 - 6817 331 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase + Term 6832 - 6863 4.1 + Prom 6963 - 7022 11.4 8 4 Op 1 4/0.000 + CDS 7065 - 7664 465 ## COG1846 Transcriptional regulators 9 4 Op 2 35/0.000 + CDS 7664 - 8731 1091 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 10 4 Op 3 . + CDS 8761 - 9447 226 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P + Term 9515 - 9559 6.0 Predicted protein(s) >gi|284795509|gb|ADDQ01000040.1| GENE 1 293 - 1003 813 236 aa, chain + ## HITS:1 COG:no KEGG:EF3155 NR:ns ## KEGG: EF3155 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 236 1 232 232 211 54.0 2e-53 MMKKKMMASLLVGSAVVGASLAPLSAQATTTGNTPVQVEFGGGVLPDQGDEIGTVDPDPG TSNTDFDLLAVPKGLNFPLTKIGEDLSAIKLPTNERFRSVMVGDLRGTKEGWHVTSEIAG LTNGTEQLAGTIDIALTASYAQYLTPETEKGYYVAAIVQNGINIANDPTAPDFSGTSIKI GGGATLLMNATVGKGQGTWAGRFDDMTLNVTTPMQQLKKGAYTGNITWNLVAGPSI >gi|284795509|gb|ADDQ01000040.1| GENE 2 1100 - 1816 835 238 aa, chain + ## HITS:1 COG:no KEGG:EF3153 NR:ns ## KEGG: EF3153 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 238 1 238 238 413 96.0 1e-114 MKKKMMTSLLVGSAVVGASLAPLSVQATTTGNTPITAEFEGGTLPDGNGDANTVDPDPNG SNSNFDLLFIPREFNFGKLSISDDLTKPILNQRDPEAVNGHTEMIGVGDVRGGKEGWHLT AQSNGLKLGTESLQGNIKVALITQLDLEYEATNNSYVALTTAVSAPEVRPQLAAPQNWTL DLGGEAQLMANAAAGQGQGLWQFSLFNTSLNITTPANNIKAGAYTGSITWNLVAGPSV >gi|284795509|gb|ADDQ01000040.1| GENE 3 1857 - 2306 794 149 aa, chain - ## HITS:1 COG:mlr5692 KEGG:ns NR:ns ## COG: mlr5692 COG1970 # Protein_GI_number: 13474738 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Large-conductance mechanosensitive channel # Organism: Mesorhizobium loti # 1 133 18 157 157 93 43.0 1e-19 MIKEFKEFIMRGSVLDLAVGVVIGSAFTAIVTQVVEGLITPLISLIFVLTTGKKSADDAL GALVYKVEGVEFNIGSVISALITFLITAFVLFLIVKAANKMKNRGKKEEAAEEEVVPTSE DYLKEIRDLLAAQTPPAETVKTDSTVTEK >gi|284795509|gb|ADDQ01000040.1| GENE 4 2515 - 3783 1193 422 aa, chain + ## HITS:1 COG:L32666 KEGG:ns NR:ns ## COG: L32666 COG0612 # Protein_GI_number: 15673955 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Lactococcus lactis # 11 421 2 408 418 311 44.0 1e-84 MSVQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHETITKRTLLSSLMETNSLNYPNQVKL SERLAELYGASFGIGVSKKGNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQ AGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVYFNQSEDQKIPSFGTVAALAEE TAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLFKQLPFTPREEGKAAIFYNQPIRNVI EERTEREVLAQSKLNLAYNTDIYYGDSYYFALQVFNGIFGGFPHSKLFMNVREKEHLAYY ASSSIDTFRGFMTVQTGIDGKNRNQVLRLISTELENIRLGKISELEIEQTKAMLKNQYIL ALDNAGAWLEKEYLNQLMPQTMLTAEEWIARINAVTISEIQEVAKRLELQAIFFLEGETE ND >gi|284795509|gb|ADDQ01000040.1| GENE 5 3776 - 5080 1459 434 aa, chain + ## HITS:1 COG:lin1430 KEGG:ns NR:ns ## COG: lin1430 COG0612 # Protein_GI_number: 16800498 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Listeria innocua # 1 429 1 427 428 450 54.0 1e-126 MIKKDYAQIKETLYTETLENGLKVYLLPKNDFQKTYGLFTTDYGSIDNTFVPIGQEEMIE VPDGIAHFLEHKMFEKEDGDVFQKFGQQGASANAFTSFTKTSYLFSTTDQVTQNLETLLD FVQSPYFTKETVEKEKGIIGQEIQMYLDDPNWRLFFGILGNLYPKHPLHIDIAGTVASIA EITAEDLYTCYNTFYHPSNMTLFVVGKMDPEALMAFIRENQAAKEFPAVQPIRRHFPEET AADIVKESAIEMAVTRAKVLVGLKGLDEVPTTGRDLMKYQVTVNLLLQLLFGNTSQNYLA LYDEGLLDDSFSYDFNLDRSFHFADIGGDSEQPEVLAERIEAILLSATTSPELTEENLSL LKKKMIGKYFQSLNSLEYIANQFSQSLFGETTLFDKIEVIESIQLADVRQVAETLIREEG LSRFYMYPKGETEQ >gi|284795509|gb|ADDQ01000040.1| GENE 6 5248 - 6114 865 288 aa, chain + ## HITS:1 COG:lin1432 KEGG:ns NR:ns ## COG: lin1432 COG1426 # Protein_GI_number: 16800500 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 6 285 4 299 311 99 27.0 9e-21 MASVNIGETLKEARLQKNISIDELQQMTKIQKRYLEIIEQNDFESLPGTFYVRAFIRQYA SAVGLDGNQLVDIYDGKEPAIVEEPKPVYEELEGSRKQLHDEEKQSSWLLRNLPAIAFSL IGLAIAVVVLYIMWQDQKAEPIIQTPATSASVEKPKESSQAPESSTQSSTPPSSSSEPEK KTAVAVVSDANNQVTATVKDANSPINITFKGTEGSCWIGVMVDGNYTYQHTLQAGETQTT ALPANAANATLILGASNNVAIQVDGADLTLEKTPVLIRKDVTLGITYR >gi|284795509|gb|ADDQ01000040.1| GENE 7 6239 - 6817 331 192 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 5 187 484 668 904 132 40 1e-30 MNLPNKLTVLRIFMIPIFIIIVSVPMDWGTISFGDTTLAVTQLVGAIIFAVASFTDWLDG KIARAQGLVTNFGKFADPLADKMLVMTAFIVLVGQGKVPAWIVAIIVCRELAVTGLRLLL VEHGEVMAAAWPGKVKTATQMVAIILLFINNIPFSALHLPLDQIMLYACLIFTIYSGVDY FAKNKDVFKGSM >gi|284795509|gb|ADDQ01000040.1| GENE 8 7065 - 7664 465 199 aa, chain + ## HITS:1 COG:L114370 KEGG:ns NR:ns ## COG: L114370 COG1846 # Protein_GI_number: 15672690 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 39 199 50 195 291 72 33.0 5e-13 MKKTDILNKLLKIAQQPYLIFASSIEEKPDNTFETLRLLASEENVTAGRIAEYLDIKPSS VTQIIKKLESVKAVKRVKNESDARVTFVVLTDKGRESLSTQGNISNGFNEEMFKGFSEEE LESLNNYLERIEKNISSEEFLDKIETIFGDDKNWEHFRKISARYGRAREQMMGHDGFGRF GEFNGEYGGFEGWKRGRRR >gi|284795509|gb|ADDQ01000040.1| GENE 9 7664 - 8731 1091 355 aa, chain + ## HITS:1 COG:L116532 KEGG:ns NR:ns ## COG: L116532 COG1132 # Protein_GI_number: 15672693 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Lactococcus lactis # 20 354 12 346 584 330 50.0 2e-90 MAVGGGGKNSHDSIRADKTKFSFKEFLGLIKMTEPNYLLLGIGMIFLVISSSIQVYVPKL ASSLVNNFQKGVDYSLLGKVVGLFIFSALVSALGGTILGIFGENVIQNMRKRLWNKLTIL KVSYFDSVKAGEISSRVVNDTNQVKQLLAVTFPQTVASVITVIGTVYMMIKMDWHMSLAM VIAVPVVILCMIPVMAFGSKVSHIRQDAMSQFNGLATETLSEIRLVKTSNAESQAQVRAA NEVDRLFNVGKKEAIFDASMQPIMMMVFMSMVFGLLAYGMHRIAIGVMTIGTLMSFLMYL FNLIGAMPIIATLFSEVAKAAGSTRRVQELLSREPEDFESGQDIDLSEKTLSVKM >gi|284795509|gb|ADDQ01000040.1| GENE 10 8761 - 9447 226 228 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 1 214 145 356 398 91 29 2e-18 PILTDISFTAQPNQVIAFAGPSGGGKSTIFSLIERFYEPTEGQIKFGDIDIKDIKLSDYR RQIGFVSQDSAIMAGTIRDNLTYGLEENFSDEQLWDVLELAYARKFVEEMPDKLNTEVGE RGVKISGGQRQRIAIARAFLRNPKILMLDEATASLDSESEMKVQEALSNLMKGRTTLVIA HRLSTIVDADSIYFVEKGKVTGSGKHDELVSKHKTYAKYVSEQFKVTE Prediction of potential genes in microbial genomes Time: Sun May 15 12:54:29 2011 Seq name: gi|284795508|gb|ADDQ01000041.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont89.1, whole genome shotgun sequence Length of sequence - 1358 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - LSU_RRNA 1 - 1358 99.0 # AE016830 [D:250246..253154] # 23S ribosomal RNA # Enterococcus faecalis V583 # Bacteria; Firmicutes; Lactobacillales; Enterococcaceae; Enterococcus. Prediction of potential genes in microbial genomes Time: Sun May 15 12:54:30 2011 Seq name: gi|284795507|gb|ADDQ01000042.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont105.1, whole genome shotgun sequence Length of sequence - 5897 bp Number of predicted genes - 6, with homology - 3 Number of transcription units - 4, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 3111 3295 ## EF3023 polysaccharide lyase family protein 8 2 1 Op 2 . - CDS 3104 - 3187 99 ## 3 1 Op 3 . - CDS 3180 - 3269 155 ## - Prom 3290 - 3349 6.0 4 2 Tu 1 . - CDS 3427 - 3516 97 ## - Prom 3540 - 3599 8.3 5 3 Tu 1 . - CDS 3694 - 4173 525 ## COG1576 Uncharacterized conserved protein - Prom 4202 - 4261 4.2 + Prom 4479 - 4538 8.6 6 4 Tu 1 . + CDS 4574 - 5872 1496 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Predicted protein(s) >gi|284795507|gb|ADDQ01000042.1| GENE 1 3 - 3111 3295 1036 aa, chain - ## HITS:1 COG:no KEGG:EF3023 NR:ns ## KEGG: EF3023 # Name: not_defined # Def: polysaccharide lyase family protein 8 # Organism: E.faecalis # Pathway: not_defined # 1 1036 1 1036 1372 1971 99.0 0 MIKKIIVVVAFMLTGFSLTAMSASAEEITDLFLQKEVTYSGVEGGKIGENWKYPQFVGEK AVDGDETTRWSADKQDEQWLIVDLGEVKNIGELVLQLHAESPVYEILVSTDGESYQSIFK EENGQSGQPTKKYIDGNNVQARFVKYQQMKMWQHTNKQFYSSSIISFEAYEKKRLPEAIK LLTENLTISEKRKQQLAFEVSPAGVDITEDQIEWSSSDPTIVTVDQTGNLTAVKSGEAKV TVKIKGTEISDTIPVTVVAENKQYAEMRAKWKMRLLGTTQYDNDADVQQYRAQIATESLA LWQTLNQAADRGYLWERKPSDTVSADYTTQFTNIKKLALGYYEPSSELFEKPEVYDAIVK GIEFMIDTKKYNGTYYTGNWWDWQIGSAQPLTDTLILLHDELLNTDAEKLNKFTAPLMLY AKDPNIQWPIYRATGANLTDISITVLGTGLLLEDNQRLVQVQEAVPSVLKSVSSGDGLYP DGSLIQHGYFPYNGSYGNELLKGFGRIQTILQGSDWEMNDPNISNLFNVVDKGYLQLMVN GKMPSMVSGRSISRAPETNPFTTEFESGKETIANLTLIAKFAPENLRNDIYTSIQTWLQQ SGSYYHFFKKPRDFEALIDLKNVVNSALPAQATPMQSLNVYGSMDRVLQKNNEYAVGISM YSQRVGNYEFGNTENKKGWHTADGMLYLYNQDFAQFDEGYWATIDPYRLPGTTVDTRELA NGAYTGKRSPQSWVGGSNNGQVASIGMFLDKSNEGMNLVAKKSWFLLDGQIINLGSGITG TTDASIETILDNRMIHPQEVKLNQGSDKDNSWISLSAANPLNNIGYVFPNSMNTLDVQIE ERSGRYGDINEYFVNDKTYTNTFAKISKNYGKAVENGTYEYLTVVGKTNEEIAALSKNKG YTVLENTASLQAIEAGHYVMMNTWNNDQEIAGLYAYDPMSVISEKIDNGVYRLTLANPLQ NNASVSIEFDKGILEVVAADPEISVDQNIITLNSAGLNGSSRSITVKTTPEVTKEALEKL IQEQKEHQEKDYTASS >gi|284795507|gb|ADDQ01000042.1| GENE 2 3104 - 3187 99 27 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIKLSEKSVWKSRIGCLKIERYGEKYD >gi|284795507|gb|ADDQ01000042.1| GENE 3 3180 - 3269 155 29 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKSLSEVITLGCLFMPNFYIEYLVEEEVD >gi|284795507|gb|ADDQ01000042.1| GENE 4 3427 - 3516 97 29 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVIPLVFSKKMSDCCASETGSAPMIIILK >gi|284795507|gb|ADDQ01000042.1| GENE 5 3694 - 4173 525 159 aa, chain - ## HITS:1 COG:lin0321 KEGG:ns NR:ns ## COG: lin0321 COG1576 # Protein_GI_number: 16799398 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 159 1 159 159 219 71.0 2e-57 MKIKLVTVGKLKEKYLIQGINEYLKRLNSYAKMEIIEVPDEKAPEKLSDAEMLQVKEKEG QRILGKINDNEYVFVLAINGKQLSSEEFSKEIEQLGISGKSNLTFVIGGSLGLSDSVLQR SNQQISFGRLTYPHQLMRLVLVEQIYRGFRIMKGEPYHK >gi|284795507|gb|ADDQ01000042.1| GENE 6 4574 - 5872 1496 432 aa, chain + ## HITS:1 COG:SPy2216 KEGG:ns NR:ns ## COG: SPy2216 COG0265 # Protein_GI_number: 15675945 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Streptococcus pyogenes M1 GAS # 53 425 35 405 407 324 55.0 3e-88 MQRKDVTPNSDKKSLLQKFGIGLAGGLLGGALILGGAYSGIIPTPNGGNNAATTTSTNHG DTKVSNVSYNVSSDVTKAVKKVQNSVVSVINMQSASNNSSADDPFGGLFGGNEGTQDSSG NNGNDLEAASEGSGVIYKKDGKTAYVVTNNHVVDKAQGLEVVLSDGTKVKGELVGTDAYT DLAVIKISSDKVDQVAEFGNSSKITVGEPAIAIGSPLGSDYANSVTQGIISSVNRNITNK NESGETININAIQTDAAINPGNSGGPLINIEGQVIGINSVKIVQSTSQVSVEGMGFAIPS NDVVNIINQLEKDGKVTRPALGITMSDLTGISSQQQEQILKIPASVKTGVVVRGVEAATP AEKAGLEKYDVITKVDGQDVSSTTDLQSALYKKKVGDKMEVTYYRGSKEMKATIDLTIDK SALTQQNNRSNQ Prediction of potential genes in microbial genomes Time: Sun May 15 12:55:01 2011 Seq name: gi|284795506|gb|ADDQ01000043.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont105.2, whole genome shotgun sequence Length of sequence - 23913 bp Number of predicted genes - 29, with homology - 28 Number of transcription units - 18, operones - 9 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 24 - 644 868 ## COG0073 EMAP domain - Prom 764 - 823 4.3 - Term 774 - 816 -1.0 2 2 Tu 1 . - CDS 855 - 1310 662 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins - Term 1335 - 1378 -0.9 3 3 Op 1 1/0.400 - CDS 1458 - 1772 469 ## COG0526 Thiol-disulfide isomerase and thioredoxins 4 3 Op 2 . - CDS 1784 - 2860 1224 ## COG1363 Cellulase M and related proteins - Prom 2976 - 3035 5.6 + Prom 3056 - 3115 8.6 5 4 Op 1 . + CDS 3167 - 3508 508 ## COG5584 Predicted small secreted protein 6 4 Op 2 . + CDS 3514 - 3624 78 ## + Prom 3676 - 3735 7.6 7 5 Tu 1 . + CDS 3827 - 5482 1667 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Term 5485 - 5532 12.1 - Term 5472 - 5519 12.1 8 6 Op 1 . - CDS 5520 - 6071 440 ## PROTEIN SUPPORTED gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) - Term 6089 - 6136 3.2 9 6 Op 2 . - CDS 6148 - 6915 704 ## EF3051 hypothetical protein - Prom 6975 - 7034 5.5 + Prom 7032 - 7091 8.1 10 7 Tu 1 . + CDS 7141 - 7503 389 ## EF3052 hypothetical protein + Term 7520 - 7591 16.6 - Term 7519 - 7568 11.2 11 8 Op 1 . - CDS 7623 - 8198 479 ## COG3859 Predicted membrane protein - Prom 8240 - 8299 5.4 12 8 Op 2 . - CDS 8361 - 8987 728 ## COG3212 Predicted membrane protein - Prom 9011 - 9070 5.7 - Term 9043 - 9090 7.7 13 9 Tu 1 . - CDS 9091 - 9876 713 ## EF3055 hypothetical protein - Prom 9953 - 10012 7.3 + Prom 9937 - 9996 7.2 14 10 Tu 1 . + CDS 10110 - 10844 682 ## COG3764 Sortase (surface protein transpeptidase) + Term 10845 - 10902 13.1 - Term 10841 - 10882 7.5 15 11 Op 1 . - CDS 10892 - 11122 354 ## EF3057 hypothetical protein 16 11 Op 2 . - CDS 11211 - 11681 706 ## COG0394 Protein-tyrosine-phosphatase 17 11 Op 3 . - CDS 11722 - 12291 562 ## COG1309 Transcriptional regulator - Prom 12380 - 12439 8.2 - Term 12385 - 12448 13.7 18 12 Tu 1 . - CDS 12469 - 13914 1760 ## COG3883 Uncharacterized protein conserved in bacteria - Prom 14146 - 14205 10.3 - Term 14151 - 14196 8.2 19 13 Op 1 19/0.000 - CDS 14219 - 14728 501 ## COG2891 Cell shape-determining protein 20 13 Op 2 . - CDS 14725 - 15585 976 ## COG1792 Cell shape-determining protein - Prom 15616 - 15675 6.4 - Term 15705 - 15754 6.4 21 14 Op 1 26/0.000 - CDS 15767 - 17881 164 ## PROTEIN SUPPORTED gi|223937065|ref|ZP_03628973.1| ribosomal protein S1 - Prom 17933 - 17992 3.1 - Term 18012 - 18060 7.1 22 14 Op 2 . - CDS 18068 - 18373 511 ## PROTEIN SUPPORTED gi|227517326|ref|ZP_03947375.1| ribosomal protein S15 - Prom 18567 - 18626 5.8 + Prom 18528 - 18587 8.5 23 15 Tu 1 . + CDS 18617 - 19180 824 ## COG0242 N-formylmethionyl-tRNA deformylase + Term 19190 - 19233 12.4 - Term 19176 - 19221 12.0 24 16 Op 1 . - CDS 19228 - 20004 760 ## COG0561 Predicted hydrolases of the HAD superfamily 25 16 Op 2 . - CDS 20014 - 20667 606 ## COG4912 Predicted DNA alkylation repair enzyme - Term 20682 - 20727 9.2 26 16 Op 3 . - CDS 20740 - 21543 738 ## COG2116 Formate/nitrite family of transporters + Prom 21631 - 21690 11.1 27 17 Tu 1 . + CDS 21867 - 22478 1045 ## PROTEIN SUPPORTED gi|29377528|ref|NP_816682.1| 30S ribosomal protein S4 + Term 22521 - 22554 2.1 + Prom 22534 - 22593 8.1 28 18 Op 1 . + CDS 22626 - 23186 168 ## PROTEIN SUPPORTED gi|163764517|ref|ZP_02171573.1| ribosomal protein L32 29 18 Op 2 . + CDS 23248 - 23784 626 ## COG0681 Signal peptidase I + Term 23791 - 23843 18.3 Predicted protein(s) >gi|284795506|gb|ADDQ01000043.1| GENE 1 24 - 644 868 206 aa, chain - ## HITS:1 COG:SP1910 KEGG:ns NR:ns ## COG: SP1910 COG0073 # Protein_GI_number: 15901735 # Func_class: R General function prediction only # Function: EMAP domain # Organism: Streptococcus pneumoniae TIGR4 # 1 202 1 200 208 206 54.0 3e-53 MIFAYNKEHVGDVLLVIVADDQGAENQVKRVGDVARVSLVEAPETVVAWNIFNASALLGD INGTGQVTLTDEQIKKVNTAIKDAGFSETLEKDDTPKIVVGFVKSCKKHPDSDHLSITQT EVDNGEILQIVCGAPNIKAGQKVVVAKPGAMMPDGLMIWPGVLRGEESFGMICSAKELRL PNAPAKKGILELPFDAEVGSAFAVGE >gi|284795506|gb|ADDQ01000043.1| GENE 2 855 - 1310 662 151 aa, chain - ## HITS:1 COG:SA1532 KEGG:ns NR:ns ## COG: SA1532 COG0589 # Protein_GI_number: 15927287 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Staphylococcus aureus N315 # 6 150 4 146 166 125 44.0 2e-29 MEEQMYKNILVGVDGSDQANLAYERAIEVARRNGSRVIVANILENQVYTMMGYSTLNDQL IDQETAAAEELMADCKKYAESVDFHNVETVTMFGSPKEVMSHELPEKYNVDLIMVGQSGL NAVERVVMGSVSSYIIRQAPCDVLIVHSEEK >gi|284795506|gb|ADDQ01000043.1| GENE 3 1458 - 1772 469 104 aa, chain - ## HITS:1 COG:SP1911 KEGG:ns NR:ns ## COG: SP1911 COG0526 # Protein_GI_number: 15901736 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Streptococcus pneumoniae TIGR4 # 1 103 1 104 105 134 59.0 3e-32 MIYPNSLEELATYVEKGKNVFFFTADWCGDCRFIKPVMPEIEEAFPAFQFIEVDRDQFID VAAEWNIFGIPSFVVIENGQELGRLVNKDRKTKEEISAFLTSLG >gi|284795506|gb|ADDQ01000043.1| GENE 4 1784 - 2860 1224 358 aa, chain - ## HITS:1 COG:SPy0115 KEGG:ns NR:ns ## COG: SPy0115 COG1363 # Protein_GI_number: 15674335 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Streptococcus pyogenes M1 GAS # 6 354 5 352 355 417 56.0 1e-116 MEEKTFQRIKELTELQGTSGFEDDIRAYMKEHITPLVDDVQYDGLGGIFGIKRSKVEAAP RVMVAAHMDEVGFMLTQINDNGLFQVVPLGGWNPYVVSAQRFTLKTSKGNYPCISSSIPP HLLRGTSGQKQLEVSDVLFDAGFSSKEEAESFGVRPGDSIVPQTETIKTANGKNIISKSW DNRYGCTLVLDALETLQNEELGHTLIAGANVQEEVGLRGSKPSVHKFNPDIFFAVDCSAA DDIHTKKGTYGHLGEGTLLRIFDPGLITLPRLREYLLDTAATHNIPYQYFVSKGGTDAGA AHTTNNGVPSTVIGVCGRYIHTHQTMFSIADYEAAREMLLQALRGLDKSTVNTIVYGK >gi|284795506|gb|ADDQ01000043.1| GENE 5 3167 - 3508 508 113 aa, chain + ## HITS:1 COG:lin1653 KEGG:ns NR:ns ## COG: lin1653 COG5584 # Protein_GI_number: 16800721 # Func_class: S Function unknown # Function: Predicted small secreted protein # Organism: Listeria innocua # 30 108 19 100 103 85 54.0 2e-17 MNEENELTYFKGGLALGVGLGLVGGIASTLFYHKKKTISADLVLENVKAAFLKEGPIEGS WIEFEKKPLRKFAIHSKTYTGGICRIEDDGIVQYEFTADAYTGTVIDIQRLKD >gi|284795506|gb|ADDQ01000043.1| GENE 6 3514 - 3624 78 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLQKHLFAFVTIFFSSHLFFVKGMFILCQKNQINDE >gi|284795506|gb|ADDQ01000043.1| GENE 7 3827 - 5482 1667 551 aa, chain + ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 20 549 22 556 559 410 42.0 1e-114 MKKSVLFTSLLVLSSLALAACGGGSDDKGASNGGSDNQVYTMVESQEMPSADPSLATDEV SFTTLNNVYEGIYRLDKDNKPAPAGAAEKATVSEDGLVYKVKLREESKWSDGKPVTAADY VYGWQRTVDPVTASEYAYMFEPVKNAEKISKGELPKEELGIKAINDHELEITLETATPYF DDLLAFPSFLPQRQDIVERFGKDYTKSSDKAVYNGPFTLTEFDGPGTDTKWSLTKNEEYW DKETVKLDKVAINVVKEAPTALNLYETGEVDDTYLSGELAQQMQNSPDLVQLKAASSFYL EMNQADEKSPLTNANLRRAMSYAIDRDSLAKNILANGSLPSQGFVPVDVAKSPKTGEDFV KEAGSDKLVKYDKKKAVEYWNKAKQELGVSNLTVDLMVDDSEGAKKMGEYLQGSLSDTLE GLKVTVTPVPMAVRLDRTLKGDFQIAIRGWSADYSDPINFLDLLESSTSNNRGRYSNPEY DKFIAASKTTDVNDPEKRWEDLINAEKTVIADMGVVPIYQKAESHLRAPNVKEIIYHPTG AKYDFKWAYKE >gi|284795506|gb|ADDQ01000043.1| GENE 8 5520 - 6071 440 183 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) [Campylobacter concisus 13826] # 1 183 1 182 185 174 46 6e-43 MDRCTWATNTTEEMQAYHDDEWGRPVHEEQQLFELLTLESMQAGLSWAIILNKRETLRAA YDAFDYRKIARYDEEKILALLANPGVIRHRLKIQATITNAQVFQEVQAEFGSFDRYLWNF VDQQPIVNHWQHPEEVPASTELSQEISRVLKKRGFKFLGATTVYSFLQAAGLVNDHLETC HYK >gi|284795506|gb|ADDQ01000043.1| GENE 9 6148 - 6915 704 255 aa, chain - ## HITS:1 COG:no KEGG:EF3051 NR:ns ## KEGG: EF3051 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 255 1 255 255 509 99.0 1e-143 MSKKPSGYQKKVLTVLLVSFGFGGLLAQFSPMKSGGFSSWFDDSYVKASAESSKTKEPAP VKIEKKVKPLSYGQQVNQEIEKKQYDGHLDLPLELQTDAKWKDTAYGFGNVDKPNTIEIN GCAIVSLAMVGSYMDHQEVTPLDVLAWAKNDFFMEGQGTAWSIFSAYAEMKGYNCQEIGD IETVSAFLKEGHPVIISVKPGYFTTTGHIMVMSGVDEKGDFWINDPNDSEEKGHSKRTFT AEEVMNEALNFWAFY >gi|284795506|gb|ADDQ01000043.1| GENE 10 7141 - 7503 389 120 aa, chain + ## HITS:1 COG:no KEGG:EF3052 NR:ns ## KEGG: EF3052 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 120 1 120 120 180 100.0 1e-44 MDQHKATIKSISKLITLSSQHFFSAFLEDSQDQKNKEKERSALLQELQVAAAQKSLVVLQ LKEVPTAHKFETVIGWIVSKNISDNIVVRLQTDEQQLRMIPVASVMKVSTLANRHQRQIH >gi|284795506|gb|ADDQ01000043.1| GENE 11 7623 - 8198 479 191 aa, chain - ## HITS:1 COG:SPy0600 KEGG:ns NR:ns ## COG: SPy0600 COG3859 # Protein_GI_number: 15674683 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 1 190 1 186 187 115 38.0 4e-26 MVKKMDLRIWVEGTVVAAMAMALSFLPIEFANSGLDLSLGMVPLVLYSFRRGLLPGVAAG FVWGMLNIILGTAMKNFLSVPQIIFEYPFAFAFGGMGGVFARKIQLYFQANRLKSAIRTI ILGSVVAVFARWFWHFWAGVLVWGMYAPEGMSPYLYSFVLNGTSTVVNCLYVSLVLGLLA KVAPQLFVPKK >gi|284795506|gb|ADDQ01000043.1| GENE 12 8361 - 8987 728 208 aa, chain - ## HITS:1 COG:lin0040 KEGG:ns NR:ns ## COG: lin0040 COG3212 # Protein_GI_number: 16799119 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 64 208 60 203 203 90 37.0 3e-18 MKKILYGALTGLALFLVAGCTPKTPTTVSSTNEQKETAISTSETSTTVQQEATTTSEKAT AVAVSLEKVTTAFEKKYPEAKITSLQLDTDFGRYFYEIEGVDQQKEYQVEVNAETGEFTK EKVETLDADEQNGVKMQEEALDLTNIISREQATTLAEKEAKVGQATDWKLEKELGITYWE VKVKEGQQKIEVKIDAHSGKILTTERDD >gi|284795506|gb|ADDQ01000043.1| GENE 13 9091 - 9876 713 261 aa, chain - ## HITS:1 COG:no KEGG:EF3055 NR:ns ## KEGG: EF3055 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 261 1 261 261 499 100.0 1e-140 MLDLIYVHIDVTSNAVLSKGITHSDFVRSIVHHPQNLLLLDPSAEAGEYDMHSGLKIIRG EESVNRYFQSLQRRWMTEEIKWIDFSDVTMLKELTPLEISELLYFGHMKNSLHSPFFYKL QNDFVFFEFADQMTRVYYRYIDEFYRIFADKITRVVLEKVNQKKAFFKRNTPVEKLSPEL LKNMKGILQEGVIFCFQQTEVDKEEYRIPIYLVEDSLSKMKNTSYQKEEILATLVYNSEK RIWHIEQENDFGEIFMLAHEG >gi|284795506|gb|ADDQ01000043.1| GENE 14 10110 - 10844 682 244 aa, chain + ## HITS:1 COG:L125196 KEGG:ns NR:ns ## COG: L125196 COG3764 # Protein_GI_number: 15673095 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Lactococcus lactis # 4 242 44 287 287 216 45.0 2e-56 MRPKEKKRGKNWLINSLLVLLFIIGLALIFNNQIRSWVVQQNSRSYAVSKLKPADVKKNM ARETTFDFDSVESLSTEAVMKAQFENKNLPVIGAIAIPSVEINLPIFKGLSNVALLTGAG TMKEDQVMGKNNYALASHRTEDGVSLFSPLERTKKDELIYITDLSTVYTYKITSVEKIEP TRVELIDDVPGQNMITLITCGDLQATTRIAVQGTLAATTPIKDANDDMLKAFQLEQKTLA DWVA >gi|284795506|gb|ADDQ01000043.1| GENE 15 10892 - 11122 354 76 aa, chain - ## HITS:1 COG:no KEGG:EF3057 NR:ns ## KEGG: EF3057 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 76 16 91 91 108 96.0 5e-23 MNSSYLSYVFELSLYYLLLIMSLPLVYAVTYHLSFSSMYTSEWLMISVFLSPLVLLFAGI RYGFARLKQQERQAIK >gi|284795506|gb|ADDQ01000043.1| GENE 16 11211 - 11681 706 156 aa, chain - ## HITS:1 COG:lin0937 KEGG:ns NR:ns ## COG: lin0937 COG0394 # Protein_GI_number: 16800007 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Listeria innocua # 1 150 1 149 152 172 52.0 3e-43 MVTVLFVCLGNICRSPMAEAIFRQKVQQAGLESTIQVFSAATSHWEVGSQPHKGTRKILE QQGISYQGMRATQIQPSDFKKYDYIIGMDANNVADLKALAPQEEQPRIHLFMEVVAGKET MDVPDPYYTGDFEETYRLVEAGTSEWLKKIKAQLKD >gi|284795506|gb|ADDQ01000043.1| GENE 17 11722 - 12291 562 189 aa, chain - ## HITS:1 COG:lin0482 KEGG:ns NR:ns ## COG: lin0482 COG1309 # Protein_GI_number: 16799557 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 7 185 7 185 186 196 54.0 2e-50 MSGTHDTKQAIASALIELCEQKDFRKISVQDITKKVGLNRQTFYYHFTDKYDLLRWIYRH DALIYLETDICLENWEEQALKLLKAIKEKSHFYYTTVTSDSEVLLNVFSASTNRLFISLF EQVDVENHLTDKDKQFYANFFSYGCSGVLTKWILEEYPQTPLEMATQLFRLAKDTEFMAY HLYEQEANE >gi|284795506|gb|ADDQ01000043.1| GENE 18 12469 - 13914 1760 481 aa, chain - ## HITS:1 COG:SP2216_1 KEGG:ns NR:ns ## COG: SP2216_1 COG3883 # Protein_GI_number: 15902020 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 274 1 270 270 93 31.0 8e-19 MKKSVLSALMVCSITLTSVALPSAAFADEYDTKIQQQDQKINALTSQMSDAEAKVAAIEN DMVETAKQIDTLTAKKNKLSSEVSKLYSEISDLNVRIQKREVQMTKQARDVQVNGQSDSI IDAVLDADSVADAIGRVQAVSTMMSANNELLEQQKEDKATVEKKTKNVEKQIAELEAATK ELNDKTESLKTLKIQQEVAKNDLEAQRSEEQGKKDGFIKQKKEAEKRLAEEQARQRAAAK KAEEQAAAQAQAAAQKAAAEQAKATKAANEAAASAAEEKAATPAVESSTTTESTTTQETT TSSTETESVVTTPAAAPEKEKEVPVTNPTTPEKGNEAKPGNGGVTSGKQAAINAALADVG NSYATGWNQPGECLVSVRRWLAAGGINFGYGGPNSGYVASGATQVSWSNVQPGDVVQYES AYSPDSWIGGVHTVLVTGVSGGSVQIVEANNPGGSGYVSSNSNWSPAPPAGFRAVVWRFP G >gi|284795506|gb|ADDQ01000043.1| GENE 19 14219 - 14728 501 169 aa, chain - ## HITS:1 COG:L98132 KEGG:ns NR:ns ## COG: L98132 COG2891 # Protein_GI_number: 15674212 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Lactococcus lactis # 7 169 6 168 175 82 35.0 4e-16 MIRKEYLKYVTPILLFFLMLIDAHLTKSFETWTSNVYFASSHLLLLAFMFAVPNFSKRYL LITSLILGFICDSYYIGIIGIYTVALTLSVMLMYTFKEVIQTNLLTGFFGIVIFTTLYEL IAVLIQVAFHLADVSPILFITRVLGPTLLLNMVWYVILSYPLKKLFSVK >gi|284795506|gb|ADDQ01000043.1| GENE 20 14725 - 15585 976 286 aa, chain - ## HITS:1 COG:L98749 KEGG:ns NR:ns ## COG: L98749 COG1792 # Protein_GI_number: 15674213 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Lactococcus lactis # 44 279 44 285 291 165 40.0 1e-40 MKKFNPNKNIIITLILVIILVTIISLTAAQRSEKGKTNVVQGGVNNSVSMVDRVISFPAR VVENGLSSMGNLINTFKENERLKEKIDSYNELAVQNNNYKREIDSLKQELNLNETLANYE KVTANVITRSPDTWQDLLIIDKGTNDGIEAGMAVMAQKGLVGRVIEVNATTAKVELLTSK NVNSNHFPVRVTSANGESFGLLKNYDNKTNALIVSQLTGDATLKEGDVVQTSGLGGNSPA DLAVGTVIKVKPDSFGLDREVYVKPYADVYGISVVTVVKRSAGESE >gi|284795506|gb|ADDQ01000043.1| GENE 21 15767 - 17881 164 704 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|223937065|ref|ZP_03628973.1| ribosomal protein S1 [bacterium Ellin514] # 455 695 263 514 553 67 27 7e-11 MTEKQVFKTTWGGRPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDVDFFPLTV NYEEKMYAVGKIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVD QDCTPEMAAMFGSSLALAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDIELTVAG TKEAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDAD LKKEIFDAYYNTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFAEHEEEAQLLKEVKQI AEDLEKDVVRELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTL APLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQIIP SEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENYT ILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILEE LTTTIAAPREELSQYAPKIEMIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNVS IASSDAEMIKKAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLAN ERVNNVEDVVKLGDEVLVKVTEIDKQGRVNVSRKALLNEENKEK >gi|284795506|gb|ADDQ01000043.1| GENE 22 18068 - 18373 511 101 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227517326|ref|ZP_03947375.1| ribosomal protein S15 [Enterococcus faecalis TX0104] # 1 101 1 101 101 201 99 4e-51 MIRRIIEKEVEQMAISQERKNEIIKEYARHEGDTGSPEVQIAVLTEDINQLNEHARTHKK DHHSYRGLMKKIGHRRNLLAYLRKTDIQRYRELIQRLGLRR >gi|284795506|gb|ADDQ01000043.1| GENE 23 18617 - 19180 824 187 aa, chain + ## HITS:1 COG:SP1456 KEGG:ns NR:ns ## COG: SP1456 COG0242 # Protein_GI_number: 15901306 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Streptococcus pneumoniae TIGR4 # 1 187 13 203 203 262 68.0 2e-70 MITMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVG LAAPQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRD VPGYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKENPFALK EGVLVIE >gi|284795506|gb|ADDQ01000043.1| GENE 24 19228 - 20004 760 258 aa, chain - ## HITS:1 COG:lin1028 KEGG:ns NR:ns ## COG: lin1028 COG0561 # Protein_GI_number: 16800097 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 4 258 3 256 256 178 37.0 1e-44 MERKLFAFDIDGTLLNSEKKALDSTREALAKLREQGHLVTLATGRSRYMAQEVIWDLDFT NYVLCNGAAAFVDHEQYYQNLLHAEALERLAQDSDQRGLGFACVGLDDIKKSNQHRAEKM EIAMNSFHFHSPAYDEHFYRQNDIYQALAFYDAEDQCTFEEEYPEFRFIRWHQHSVDVVP KDGSKSATLTYLAKRVGIDAKNIIAFGDGENDREMLSHAGIGVAMGNASPSIQKVATMVT DTNDNDGIWKALKEMKAI >gi|284795506|gb|ADDQ01000043.1| GENE 25 20014 - 20667 606 217 aa, chain - ## HITS:1 COG:Cgl0917 KEGG:ns NR:ns ## COG: Cgl0917 COG4912 # Protein_GI_number: 19552167 # Func_class: L Replication, recombination and repair # Function: Predicted DNA alkylation repair enzyme # Organism: Corynebacterium glutamicum # 9 210 19 206 208 120 37.0 1e-27 MDTLQFQKNPETAAKMSAYMKHQFVFAGIPAPERQALSKQLLKESHTWPKEKLCQEIEAY YQKTEREYQYVAIDLALQNVRRFSLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLT ELLTIFALFYGAENFWNRRVALNLQLMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSL RQYSKTNPQWVEELMKELVLSPLAQREGSKYLAKASE >gi|284795506|gb|ADDQ01000043.1| GENE 26 20740 - 21543 738 267 aa, chain - ## HITS:1 COG:lin0602 KEGG:ns NR:ns ## COG: lin0602 COG2116 # Protein_GI_number: 16799677 # Func_class: P Inorganic ion transport and metabolism # Function: Formate/nitrite family of transporters # Organism: Listeria innocua # 5 258 6 259 266 273 67.0 2e-73 MKSGSPLFEQIDKSIDKKVNLFSNSFSRYAVRAMLACLFLTLGTAVAFAIAIKGEGISHG LGKMLYAFMFSWSLVMILYMNAELGTSNMLYMTVGVYRKKVNFSLAAKILFTCILFNLIG GVLFGFLVSLTVPFQDLPKDSFFFTSIAGKLEKTTLQILVEAMFANIVVNTAVLVSMRMK DDAGKVAAIIFIIFIFAFLGFEHVIANFPAFSLAYFASNGAIEAFTAGNVVHNLFWAFIG NFIGGGLIMGLGYAWLDKDNKNLTYFD >gi|284795506|gb|ADDQ01000043.1| GENE 27 21867 - 22478 1045 203 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29377528|ref|NP_816682.1| 30S ribosomal protein S4 [Enterococcus faecalis V583] # 1 203 1 203 203 407 100 1e-113 MSRYTGPSWKVSRRLGISLSGTGKELARRPYKPGQHGPNSRGKVSEYGMQLTEKQKLRHM YGMNERQFRTLFIKASKIKEGKHGVNFMVLLEQRLDNVVYRLGLATTRRQARQLVNHGHI TVDGKRVDIPSYHVEVGQVIGVREKSQNISTIKEAVEATVGRPAFVSFDTEKLEGSFTRL PERDELYPEIDEALVVEYYNQKL >gi|284795506|gb|ADDQ01000043.1| GENE 28 22626 - 23186 168 186 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764517|ref|ZP_02171573.1| ribosomal protein L32 [Bacillus selenitireducens MLS10] # 4 179 1 175 190 69 29 2e-11 MRLLMNKASLRSLILAAEFAVIIAVLSQFTIPLGIVPLTGQTFAIGLTATVLGKRTGTYA ILIYFLLGLIGLPVYAGMSSGFGVLFGPTGGYLIGFIFNGLLTGYILEKTTFNYTWAIIA NIAGALVTLVFGMIWLKYSANLPWPNAFAGGFAPFIIPGIIKAVAAAYVGILIRQRFMKR FLAHLS >gi|284795506|gb|ADDQ01000043.1| GENE 29 23248 - 23784 626 178 aa, chain + ## HITS:1 COG:lin1308 KEGG:ns NR:ns ## COG: lin1308 COG0681 # Protein_GI_number: 16800376 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Listeria innocua # 21 167 28 182 188 136 48.0 2e-32 MSSLLKRLVQLVLLVGAVLLIRHYVFSPAAVNGSSMEPTLHNNDRLWVTSIKKPQRFDII AFPSPRNGQRVAKRLIGLPGETVEYRDDTLYINGVSLSEDYLASAKRNVSKNENYTQDFT LETLEATQSLTVPEGMYFVLGDNRPRSDDSRYFGFVKQESVEGVLTFRYYPLDKIGFP Prediction of potential genes in microbial genomes Time: Sun May 15 12:55:25 2011 Seq name: gi|284795505|gb|ADDQ01000044.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont115.1, whole genome shotgun sequence Length of sequence - 34611 bp Number of predicted genes - 37, with homology - 35 Number of transcription units - 20, operones - 10 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 1/0.000 + CDS 73 - 1566 1575 ## COG4468 Galactose-1-phosphate uridyltransferase 2 1 Op 2 . + CDS 1573 - 2577 855 ## COG1609 Transcriptional regulators + Term 2578 - 2626 8.2 3 2 Op 1 . + CDS 2659 - 3153 367 ## EF1073 hypothetical protein 4 2 Op 2 . + CDS 3217 - 3480 320 ## EF1074 hypothetical protein + Term 3492 - 3526 1.6 5 3 Op 1 . + CDS 3553 - 4059 562 ## EF1075 acetyltransferase 6 3 Op 2 6/0.000 + CDS 4108 - 4548 473 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Prom 4554 - 4613 10.1 7 3 Op 3 . + CDS 4746 - 5900 1243 ## COG0477 Permeases of the major facilitator superfamily + Term 5910 - 5955 8.5 + Prom 5972 - 6031 7.9 8 4 Op 1 . + CDS 6052 - 7368 1320 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair 9 4 Op 2 . + CDS 7373 - 7762 564 ## EF1081 hypothetical protein 10 4 Op 3 . + CDS 7731 - 7847 57 ## 11 4 Op 4 . + CDS 7849 - 8031 302 ## EF1082 hypothetical protein 12 4 Op 5 . + CDS 8049 - 8354 386 ## EF1083 hypothetical protein 13 4 Op 6 . + CDS 8407 - 8838 470 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins 14 4 Op 7 . + CDS 8909 - 9151 272 ## EF1085 hypothetical protein + Term 9198 - 9250 -0.0 + Prom 9282 - 9341 6.1 15 5 Tu 1 . + CDS 9521 - 9967 493 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 9976 - 10024 8.2 + Prom 10004 - 10063 7.5 16 6 Op 1 . + CDS 10107 - 10820 561 ## COG2761 Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis 17 6 Op 2 . + CDS 10891 - 11286 267 ## EF1089 hypothetical protein + Term 11322 - 11375 17.1 - Term 11308 - 11362 17.3 18 7 Tu 1 . - CDS 11472 - 12893 1294 ## EF1090 hypothetical protein - Prom 13021 - 13080 5.3 + Prom 13008 - 13067 9.8 19 8 Op 1 . + CDS 13221 - 16532 3237 ## COG4932 Predicted outer membrane protein 20 8 Op 2 . + CDS 16536 - 17966 1400 ## EF1092 cell wall surface anchor family protein 21 8 Op 3 . + CDS 17963 - 19846 2251 ## EF1093 cell wall surface anchor family protein + Term 19886 - 19922 2.5 22 9 Tu 1 . + CDS 19940 - 20794 747 ## COG3764 Sortase (surface protein transpeptidase) 23 10 Tu 1 . - CDS 20862 - 21155 195 ## EF1095 hypothetical protein - Prom 21208 - 21267 7.1 + Prom 21172 - 21231 5.5 24 11 Tu 1 . + CDS 21349 - 21552 409 ## COG2155 Uncharacterized conserved protein + Term 21603 - 21642 5.2 + Prom 21618 - 21677 10.5 25 12 Tu 1 . + CDS 21795 - 23333 1135 ## LMHCC_1823 hypothetical protein + Term 23365 - 23415 16.2 + Prom 23437 - 23496 4.2 26 13 Op 1 . + CDS 23602 - 26622 1897 ## LCABL_28760 hypothetical protein 27 13 Op 2 . + CDS 26679 - 27146 500 ## Elen_2113 hypothetical protein + Prom 27157 - 27216 1.9 28 14 Op 1 . + CDS 27253 - 27927 794 ## gi|256962314|ref|ZP_05566485.1| predicted protein 29 14 Op 2 . + CDS 27956 - 28270 342 ## gi|256962313|ref|ZP_05566484.1| predicted protein + Term 28300 - 28347 10.0 + Prom 28285 - 28344 2.4 30 15 Op 1 . + CDS 28379 - 29716 1033 ## COG3591 V8-like Glu-specific endopeptidase 31 15 Op 2 . + CDS 29778 - 30128 317 ## gi|256962311|ref|ZP_05566482.1| predicted protein 32 16 Op 1 . + CDS 30242 - 30694 200 ## gi|256962310|ref|ZP_05566481.1| predicted protein 33 16 Op 2 . + CDS 30733 - 30825 164 ## + Prom 31423 - 31482 6.5 34 17 Tu 1 . + CDS 31564 - 32019 507 ## EF1097 hypothetical protein + Term 32226 - 32258 0.7 35 18 Tu 1 . - CDS 32139 - 32357 69 ## gi|257415712|ref|ZP_05592706.1| predicted protein - Term 32777 - 32825 10.1 36 19 Tu 1 . - CDS 32829 - 33134 358 ## EF1098 hypothetical protein - Prom 33155 - 33214 8.1 + Prom 33254 - 33313 5.3 37 20 Tu 1 . + CDS 33469 - 34609 960 ## EF1099 collagen adhesin protein Predicted protein(s) >gi|284795505|gb|ADDQ01000044.1| GENE 1 73 - 1566 1575 497 aa, chain + ## HITS:1 COG:SP1829 KEGG:ns NR:ns ## COG: SP1829 COG4468 # Protein_GI_number: 15901658 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose-1-phosphate uridyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 9 494 5 488 491 530 54.0 1e-150 MMKESSKWIAAFVEIIIENGDWTETDRYYLTNRIAKLVGCDFFEQPEAVACEQEPLHVVE QLLNIAQANHQIDDSITEAEQLEAELMDFITPTPTTINQKFMDYYQESPRKATDYFYQLC KTNNYIKTKAIAKNIIFPMDSPYGKLEITINLSKPEKDARKILAEKKMSQKKYPACMLCM ENEGYYGRVNYPARTNHRIIRLNLEDEAWGFQYSPYAYYNEHAIFLDQQHREMKIEKKTF QRLLKITELFPEYFVGSNADLPIVGGSILSHDHYQAGRHTFPMDLAPMETRFSLKKYPAI TAGILKWPMSVIRLQSNHQEELVEAAELILTKWRNYSDERVSVRAYSEDGTPHHTITPIA RRKGSLFELDLVLRDNNVSEEFPDGIFHPHPEVQHIKQENIGLIEVMGLAILPPRLAQEL REVEKYLLKQPNQIAESHRAWADELSQQTTTEANVKEVIQQGIGTIFVQILTDAGVFKRD EEGRRAFERFIQCIEND >gi|284795505|gb|ADDQ01000044.1| GENE 2 1573 - 2577 855 334 aa, chain + ## HITS:1 COG:SP1854 KEGG:ns NR:ns ## COG: SP1854 COG1609 # Protein_GI_number: 15901682 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 4 329 1 331 335 249 41.0 7e-66 MRNIVTIKDIAEQVGVSSATVSRVLNYDETLSVSDETKKKIFETAETLNYKKRARKKQAG KKKIRFVQWFSDPEELDDIYYLSIRLGVEKRAEELGFLLVKESLTNLSQKRFDGTIALGK FDEKQVAALAALGAPLLFVDFDAMAFGQNSIVVDFAGSVKTIVQEFLAQGHQKIGILSGQ EYTKESHVALVDPRFVAFKETLKDLDLYHQEWVVEAAFSVEEGYQAMKDFIEKADTRPTA FFAASDTLAIGAMRALQEAAIRVPEDISIIGFNDISVAKYVSPTLTTVKVHTEWMGELAV ETMKELCLNTPPVPRKIIVGTEFIQRDSTKHSSK >gi|284795505|gb|ADDQ01000044.1| GENE 3 2659 - 3153 367 164 aa, chain + ## HITS:1 COG:no KEGG:EF1073 NR:ns ## KEGG: EF1073 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 164 1 164 164 301 98.0 6e-81 MQPKLIILRGNSGSGKTTIAKALHQCLKEQSLLISQDVVRREMLRVKDETGNISIALFKQ LVAFGYQECQYVIVEGIFQKAIYHSFFQEIIHLFEGNVQVYYFDISFEETLKRHSQRNKN QEFGVVEMKRWWLPEDYLGFPGEQRLSEQLSEKQIIRQILADIQ >gi|284795505|gb|ADDQ01000044.1| GENE 4 3217 - 3480 320 87 aa, chain + ## HITS:1 COG:no KEGG:EF1074 NR:ns ## KEGG: EF1074 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 87 1 87 90 172 98.0 3e-42 MDYQERLKNLPPEVMTAFSESFIFLISNDKVQHFPARDLTQAEMIQRVKEKLGEAVTWSL WQGFVIAVNSEETCVAVLPKYHQLDGF >gi|284795505|gb|ADDQ01000044.1| GENE 5 3553 - 4059 562 168 aa, chain + ## HITS:1 COG:no KEGG:EF1075 NR:ns ## KEGG: EF1075 # Name: not_defined # Def: acetyltransferase # Organism: E.faecalis # Pathway: not_defined # 1 168 1 168 168 326 98.0 2e-88 MSELVVIREMQEKDILALDTQFVQQGWPSRQEILMNYLEEQLVKQRTVFVAEKKATLLGY LTLLPLAKEGPFKNLYPEIADFNVFLPFQKQGVGRLLLNRAENVAKSYADTVSLGVGLHP GYGAAQRLYIKQGYVPDGSGVWFQNKQLKPNDRCVNDDELVLYLSKKL >gi|284795505|gb|ADDQ01000044.1| GENE 6 4108 - 4548 473 146 aa, chain + ## HITS:1 COG:SP1023 KEGG:ns NR:ns ## COG: SP1023 COG0454 # Protein_GI_number: 15900894 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Streptococcus pneumoniae TIGR4 # 1 142 1 141 143 130 47.0 7e-31 MIRKMKPTDAAALTIINKEQLGYEVPVDVTCKQIEKLLLASDREFLYVYEETKTGKILGY VHAQLYETIYSQTLLNVLGLAVAKEAEGRGIGKQLMTKLETEAKKCNLSAIRLNSGEQRT AAHQFYEHIGYVSDKKQKRFIKYLDT >gi|284795505|gb|ADDQ01000044.1| GENE 7 4746 - 5900 1243 384 aa, chain + ## HITS:1 COG:L125116 KEGG:ns NR:ns ## COG: L125116 COG0477 # Protein_GI_number: 15672105 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 1 381 1 381 387 504 81.0 1e-143 MTKKNSMMYLAISNLFLVFLGVGLVIPVIPQLKEEMHFSGTTMGMMISIFAIAQLITSPI AGVLSDKIGRKKMIATGMLVFSISELLFGLAQAKSGFYISRGLGGIAAALLMPSVTAFVA DMTTISERPKAMGLVSAAISGGFIIGPGVGGFIAYLGIRAPFFAAAFLAFIGFILTLTVL KEPEKRILAAVEAKKGSFMDILRNPMFTSLFVIILISSFGLQAFESIYSIMATINFGFTT SEIAIVITVSGILALICQLFFFDAIVQKIGEMGLIQLTFFASAIFIAVIAFTKNNLVVVF STFIVFLAFDLFRPAVTTYLSKHAGDQQGTINGLNSTFTSFGNILGPMAAGALFDINHFF PYYVSAVILLGTGFLSLFLNRNKM >gi|284795505|gb|ADDQ01000044.1| GENE 8 6052 - 7368 1320 438 aa, chain + ## HITS:1 COG:pli0067 KEGG:ns NR:ns ## COG: pli0067 COG0389 # Protein_GI_number: 18450349 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Listeria innocua # 4 431 6 426 426 388 47.0 1e-107 MKFDYEKEPSRDILCIDCKSFYASVECAERGLDPLKTMLVVMSNAENAGGLVLSASPMAK KVLGVSNVTRKNQVPAHPDLYVVPPRMNLYMKKNQEINNLYKKFVADEDHSVFSVDESFL DVTASLSYFHCETAYKMARIIQRVVYNHVGIYVTVGIGDNPLLAKLALDNGAKHSPDFIA EWRYDRVPDTVWQLPSLTDFCGIGRRMAKRLNRLGIDSVYELAQANPHLLQETFGVMGLQ LYAHSWGIDRTFLGKKAPHKAEKSFGNSQILPRDYARRDQIELVLKELTEQVAARLRKAH CQTECITVYVGYSKGQIDREGRTGWRKQQTIPATNNTKVLITYVLALFREHYLAGTDVRQ LGLSYGKLVWNESLQLDLFSEPEEQISEMELNYLIDKIRQKFGFQALIHASSLLEGATAI HRSGLVGGHAGGNVGLGG >gi|284795505|gb|ADDQ01000044.1| GENE 9 7373 - 7762 564 129 aa, chain + ## HITS:1 COG:no KEGG:EF1081 NR:ns ## KEGG: EF1081 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 129 1 129 129 232 99.0 3e-60 MKRTKKEFTPYNEYHDRPFELKWATAFALGELQEGIEASDEYSKRAFERLPQQTTEEIEE YLEQSLKNNQVLEIQLNTLDDFGRVQPPIVGVFEGMSSMEYAKVGHTHILFEEIRHIKSH EFTKWSSLD >gi|284795505|gb|ADDQ01000044.1| GENE 10 7731 - 7847 57 38 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSLQSGRALIKKLLLYVRFVKTYEIMFIGNRNKNYGGG >gi|284795505|gb|ADDQ01000044.1| GENE 11 7849 - 8031 302 60 aa, chain + ## HITS:1 COG:no KEGG:EF1082 NR:ns ## KEGG: EF1082 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 60 1 60 60 82 98.0 7e-15 MGHHLKGHHGKKTNANGGFLTKLLAGGALVGVGKKLYDNREKIKELLSDDKEKSNDTENK >gi|284795505|gb|ADDQ01000044.1| GENE 12 8049 - 8354 386 101 aa, chain + ## HITS:1 COG:no KEGG:EF1083 NR:ns ## KEGG: EF1083 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 101 1 101 101 159 100.0 2e-38 MVKDAAYIIEEITTILEGTYFVITKKANKRRMCLHVSDTAKEFLRCRLEYETFLEQQFDY ATMFLETCTEDVSVEIQTGLLEETNYQALTVEKLQQIATKM >gi|284795505|gb|ADDQ01000044.1| GENE 13 8407 - 8838 470 143 aa, chain + ## HITS:1 COG:BH3184 KEGG:ns NR:ns ## COG: BH3184 COG0589 # Protein_GI_number: 15615746 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Bacillus halodurans # 3 143 1 141 147 102 38.0 3e-22 MSVYQHILVALDGSDQSEKAFHEAVRIAKEEQATLYLATIINDAEFTTSPFSFEELYDLE KHKSEEMLTEKAKQASEIGVKTVKKIVELGSPKRYLANTISENYAIDLIVLGATGRGAIQ RTLIGSTTDYVVNHALCNVLVVR >gi|284795505|gb|ADDQ01000044.1| GENE 14 8909 - 9151 272 80 aa, chain + ## HITS:1 COG:no KEGG:EF1085 NR:ns ## KEGG: EF1085 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 80 1 80 80 106 98.0 3e-22 MKTKIGKTVILSAFLFTSFLLLSGCTSAGEEMEKTIDRQKEKVDKTVDKQKHKNENSMES YDEKVDHSLDSQEDKIDTTE >gi|284795505|gb|ADDQ01000044.1| GENE 15 9521 - 9967 493 148 aa, chain + ## HITS:1 COG:BS_bltD KEGG:ns NR:ns ## COG: BS_bltD COG0454 # Protein_GI_number: 16079713 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 1 141 1 148 152 127 44.0 6e-30 MEIHFEKVTSDNRKAVENLQVFAEQQTFIESMAENLKESDQFPEWESAGIYDGNQLIGYA MYGRWQDGRVWLDRFLIDQRFQGQGYGKAACRLLMLMLIEKYQTNKLYLSVYDTNSSAIR LYQQLGFVFNGELDTNGERVMEWTYQNK >gi|284795505|gb|ADDQ01000044.1| GENE 16 10107 - 10820 561 237 aa, chain + ## HITS:1 COG:SSO1074 KEGG:ns NR:ns ## COG: SSO1074 COG2761 # Protein_GI_number: 15897941 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis # Organism: Sulfolobus solfataricus # 1 206 3 208 225 92 29.0 1e-18 MKIEFFHDVICSFCFPMSDRMHEIQQEFPEIELIHRSFALGWSANDFETMFGSRAAVKEE VLTHWVHANQNDSKHRFNIEGMRKQRFDFPTSKNALLAAKAAGYIGNQDTYWLLFDKLQE GLFMRSLNIEEPEVIEELVKETTIDFALWKEAVASEAVWTAVQEDFALASAYGLQGVPAL IINQKYLINGAVPKQQISQTIQKILAEEKQQQPLVSLTPSSEESASCEFKEGTWTCH >gi|284795505|gb|ADDQ01000044.1| GENE 17 10891 - 11286 267 131 aa, chain + ## HITS:1 COG:no KEGG:EF1089 NR:ns ## KEGG: EF1089 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 131 1 131 131 225 100.0 3e-58 MFNAYREYWNNITTMNASATRAQYWWPQLINYLVLGIYSAITGVYRYIEVTPNDGTIIKE WNTVTIIFFLLTALIWLANFTVRARRLHDRDHSNWWILFYLLPFIGTLVIFITLILPSKS HTRWPVNQSEI >gi|284795505|gb|ADDQ01000044.1| GENE 18 11472 - 12893 1294 473 aa, chain - ## HITS:1 COG:no KEGG:EF1090 NR:ns ## KEGG: EF1090 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 473 1 473 473 854 100.0 0 MIRFLEKNYRKMEEIIRVLSISDKWMTKKELAKYIGSSESTFIRYIEEIKQRWGESLTIK TSHKLGYRLENFNVSLYLNVLTDMAKTSTTTQLLHEFIQNPGKTIEYYCDTINISRSSFA RKLKQCNQVLETYSLRVIVDQGYQLTSQTEELPLRIFTTFFFLMYYGHYELPYQLDKQEI KQLMRRNQCQLNIISMDNSYEHDFFIMYFIVDLLREHQGFQQRFQKKTDKKSPIKMEDYL LLSRHFTGLSRETYREVLRYFQRGAFQQYYSEDQEVISQRIRENLKFNAFSQIEQLTEEV VDFAVHLLTCLYLFSQLVPFDTSELTQRATFFTRQIHFTQLHLYARLKAELHFFSALLET NLLNYSSSYIFWLLNTFPEINQSFDSKKILIISDMGLNHSQYIGNYVHDILALHRIRSNT LAITEEQLGDHRLEEFDLIITNQPIIETSVPSILINDAILFSNKRELLDLLNF >gi|284795505|gb|ADDQ01000044.1| GENE 19 13221 - 16532 3237 1103 aa, chain + ## HITS:1 COG:BH0361 KEGG:ns NR:ns ## COG: BH0361 COG4932 # Protein_GI_number: 15612924 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Bacillus halodurans # 743 1033 1087 1356 1661 73 29.0 2e-12 MITDENDKSNINIELNLLNQTEQPLQREIQLKNAQFMDTAVIEKDGYSYQVTNGTLYLTL DAQVKKPVQLSLAVEQSSLQTAQPPKLLYENNEYDVSVTSEKITVEDSAKESTEPEKITV PENTKETNKNDSAPDKTEQPTATEEVTNPFAEARMAPATLRANLALPLIAPQYTTDNSGT YPTANWQPTGNQNVLNHQGNKDGGAQWDGQTSWNGDPTNRTNSYIEYGGTGDQADYAIRK YARETTTPGLFDVYLNVRGNVQKEITPLDLVLVVDWSGSMNENNRIGEVQKGVNRFVDTL ADSGITNNINMGYVGYSSDGYNNNAIQMGPFDTVKNPIKNITPSSTRGGTFTQKALRDAG DMLATPNGHKKVIVLLTDGVPTFSYKVSRVQTEADGRFYGTQFTNRQDQPGSTSYISGSY NAPDQNNISKRINSTFIATIGEAMALKQRGIEIHGLGIQLQSDPRANLSKQQVEDKMREM VSADENGDLYYESADYAPDISDYLAKKAVQISGTVVNGKVVDPIAEPFKYEPNTLSMKSV GPVQVQTLPEVSLTGATINSNEIYLGKGQEIQIHYQVRIQTESENFKPDFWYQMNGRTTF QPLATAPEKVDFGVPSGKAPGVKLNVKKIWEEYDQDPTSRPDNVIYEISRKQVTDTANWQ TGYIKLSKPENDTSNSWERKNVTQLSKTADESYQEVLGLPQYNNQGQAFNYQTTRELAVP GYSQEKINDTTWKNTKQFKPLDLKVIKNSSSGEKNLVGAVFELSGKNVQTTLVDNKDGSY SLPKDVRLQKGENYTLTEVKAPAGHELGKKTTWQIEVSEQGKVSIDGQEVTTTNQVIPLE IENKFSSLPIRIRKYTMQNGKQVNLAEATFALQRKNAQGSYQTVATQKTDTAGLSYFKIS EPGEYRMVEQSGPLGYNTLAGNYEFTVDKYGEIHYAGKNIEENAPEWTLTHQNHLKPFDL TVHKKADNQTPLKGAKFRLTGPDTDIELPKDGKETDTFVFENLKPGKYVLTETFTPEGYQ GLKEPIELIIREDGSVTIDGEKVADVLISGEKNNQITLDVTNQAKVPLPETGGIGRLWFY LIAISTFVIAGVYLFIRRPEGSV >gi|284795505|gb|ADDQ01000044.1| GENE 20 16536 - 17966 1400 476 aa, chain + ## HITS:1 COG:no KEGG:EF1092 NR:ns ## KEGG: EF1092 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 476 1 476 476 866 99.0 0 MKNARWLSICVMLLALFGFSQQALAEASQASVQVTLHKLLFPDGQLPEQQQNTGEEGTLL QNYRGLNDVTYQVYDVTDPFYQLRSEGKTVQEAQRQLAETGARNRKPIAEDKTQTINGED GVVSFSLASKDSQQRDKAYLFVEAEAPEVVKEKASNLVVILPVQDPQGQSLTHIHLYPKN EENAYDLPPLEKTVLDKQQGFNQGEHINYQLTTQIPANILGYQEFRLSDKADTTLTLLPE SIEVKVAGKTVTTGYTLTTQKHGFTLDFSIKDLQNFANQTMTVSYQMRLEKTAEPDTAIN NEGQLVTDKHTLTKRATVRTGGKSFVKVDSENAKITLPEAVFIVKNQAGEYLNETANGYR WQKEKALAKKITSNQAGEFSVKGLKDGQYFLEEISAPKGYLLNQTEIPFTVEKNSYATNG QRTAPLHVINKKVKESGFLPKTNEERSIWLTIAGLLIIGMVVIWLFYQKQKRGERK >gi|284795505|gb|ADDQ01000044.1| GENE 21 17963 - 19846 2251 627 aa, chain + ## HITS:1 COG:no KEGG:EF1093 NR:ns ## KEGG: EF1093 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 627 1 625 625 1108 99.0 0 MKQLKKVWYTVSTLLLILPLFTSVLGTTTAFAEENGESAQLVIHKKKMTDLPDPLIQNSG KEMSEFDKYQGLADVTFSIYNVTSEFYEQRAAGASVDAAKQAVQSLTPGKPVAQGTTDAN GNVTVQLPKKQNGKDAVYTIKEEPKEGVVAATNMVVAFPVYEMIKQADGSYKYGTEELAV VHIYPKNVVANDGSLHVKKVGTAENEGLNGAEFVISKSEGSPGTVKYIQGVKDGLYTWTT DKEQAKRFITGKSYEIGENDFTEAENGTGELTVKNLEVGSYILEEVKAPNNAELIENQTK TPFTIEANNQTPVEKTVKNDTSKVDKTTPNLDGKDVAIGEKIKYQISVNIPLGIADKEGD ANKYVKFNLVDKHDAALTFDNVTSGEYAYALYDGDTVIAPENYQVTEQANGFTVAVNPAY IPTLTPGGTLKFVYFMHLNEKADPTKGFKNEANVDNGHTDDQTPPTVEVVTGGKRFIKVD GDVTATQALAGASFVVRDQNSDTANYLKIDETTKAATWVKTKAEATTFTTTADGLVDITG LKYGTYYLEETVAPDDYVLLTNRIEFVVNEQSYGTTENLVSPEKVPNKHKGTLPSTGGKG IYVYLGSGAVLLLIAGVYFARRRKENA >gi|284795505|gb|ADDQ01000044.1| GENE 22 19940 - 20794 747 284 aa, chain + ## HITS:1 COG:SP0466 KEGG:ns NR:ns ## COG: SP0466 COG3764 # Protein_GI_number: 15900382 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Streptococcus pneumoniae TIGR4 # 22 284 1 259 279 178 40.0 1e-44 MKSKKKRRIIDGFMILLLIIGIGAFAYPFVSDALNNYLDQQIIAHYQAKASQENTKEMAE LQEKMEKKNQELAKKGSNPGLDPFSETQKTTKKPDKSYFESHTIGVLTIPKINVRLPIFD KTNALLLEKGSSLLEGTSYPTGGANTHAVISGHRGLPQAKLFTDLPELKKGDEFYIEVNG KTLAYQVDQIKTVEPTDTKDLHIESGQDLVTLLTCTPYMINSHRLLVRGHRIPYQPEKAA AGMKKVVQQQNLLLWTLLLIACALIISGFIIWYKRRKKTTRKPK >gi|284795505|gb|ADDQ01000044.1| GENE 23 20862 - 21155 195 97 aa, chain - ## HITS:1 COG:no KEGG:EF1095 NR:ns ## KEGG: EF1095 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 97 1 97 97 123 97.0 2e-27 MRAKLFLILRNRVLSRVIFVILFLHVFFTTNDFTVLLLLLLLNYLLTLEDSAKKNRKIQT WQEFKQSIDWPFVAFYSGLALLVISLILLFLWFNYAR >gi|284795505|gb|ADDQ01000044.1| GENE 24 21349 - 21552 409 67 aa, chain + ## HITS:1 COG:CAC0976 KEGG:ns NR:ns ## COG: CAC0976 COG2155 # Protein_GI_number: 15894263 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 1 61 1 60 69 57 57.0 5e-09 MKYLDIIALILLIVGGLNWLLVGAFNFDLVATISGGATTPLAKIIYIIVGICAIYSIKFL APLFREP >gi|284795505|gb|ADDQ01000044.1| GENE 25 21795 - 23333 1135 512 aa, chain + ## HITS:1 COG:no KEGG:LMHCC_1823 NR:ns ## KEGG: LMHCC_1823 # Name: not_defined # Def: hypothetical protein # Organism: L.monocytogenes_HCC23 # Pathway: not_defined # 4 495 1 498 498 418 46.0 1e-115 MNNLVPKELASLFLTKKQIQKLKILSKLEFMKVDATVMEQELGTSRRQIKELISELNEDI EENIYLVLNDGLIKFNFKVEADKYIELITNCRIKYVTESSFFQLMLFVLEKRRFSILQAA ESLSYSESYVYKLINKLKQFFKQVDAGFQLEKKSEAIMQLEGCESTIRLFHYLSVVAATK GNHWLVNTITEKEIINTRQYAPTNRCEKLSPVGKNKVNFLLAIYRSALKSDHRLAPLTQD ILDLGEIITDHHEINLLQTYLGEKDIGKESSHNEPIHLLFLANYFIEELRTKDEKIQAGK QMSGFEGNGIINSCIEVIHQLQQKINFPEELQYLLLYNLCSRVIVIHYLQLYKFMPLFKF PKLNGEMDYFVESCVAKGLANYQQEPSFSKLVGSLTQIILGYLSLIFPYPQKVFVEFFHR PEYKSIIENAIETMYNANSLQVTDNYTEANIVVSDTGGYDKKYYFHFKDVFDQAAWTELG AYLNQLVSNRIIENHHLSVDDIFTSYSSKNEQ >gi|284795505|gb|ADDQ01000044.1| GENE 26 23602 - 26622 1897 1006 aa, chain + ## HITS:1 COG:no KEGG:LCABL_28760 NR:ns ## KEGG: LCABL_28760 # Name: not_defined # Def: hypothetical protein # Organism: L.casei_BL23 # Pathway: not_defined # 386 1004 18 653 654 136 23.0 4e-30 MKWFYPKKVSFLFFLFLVFPLKEADANTQIAPKDFSVEETTTSVQNSSNNIIQSSDTTQM NSIDKNKTKENEFSSMTLSIQQEKAIQLKVNQELTSKMIEDAVIINNKLKDSTIEFIPEE NLFQTTGEKKVRVKVIEKFDGDSKEIEEPITVSVERVQTITAEPNPQDLILGSDSSMWNK LDFVKLVSIDGKEVDKNGYVVDFVTVPETNTVHQSQVKLKLSDRWRTKSIFIDVPVNIVW GESILYQTNYSIAIERSAAAFTLHTNSNPIITSAIGLSNGTNNDSRVYAGYGILPQNLYY TFNWFDLSNVPSYLMTEEAKGTKYVEANAQDSVGMKLDAWGKNRQQTVHYGDVVRAWLAI PDWNWLYHDNQRALYNQGKNSVYYEITPTGYKPLKVNLASTKKQKISIGASDKEISNRID QSIDLPEGVTARFVKFPPRTKLGDSYGVIRVSQKLSTGKTIEYEYSVPFEIVKDQMTVKF KEDASYILGQYTANFDYKNFIQEVKVGNKVLNKNEYDVAVLSQVESEIQYIGKNEIRLRV SSGQSTNTVESLVPVNVSWGQSIAFGGLEISSLPSSEARTTGAYTLQLNDKPQIVATPGN REGLNSRIHYYFTNEDYYKVDYFNMHTSRKIKDADKGDKSVTAQGQQYPREPVNQWGRTD VNYGDIIRSFGAEKGRHWVYEGDEQKQSFARKNNDYLYYEITKQGYSLLEINRLNTKKVK VPANSSKEYLDSIKTSFFTNLDSNKINIIGFSKYPDTSKPTSSGTLEVSEKLTTGKTITY SYEVTIGTTYTIMEQAVDEKNKPLSKEKITVLDSTDSYQPKPDKFLDNNGTVYKYFGYSY TNDSNSQQETIIGMPNQTFRSNTKIKYFYRNTDKLINVTLPTDLVFGTYNGSKKVTAKNY QIRNNSEELKTNVIFEKFEKVHSNVKLLSNTEKEPAKEENSAKLNLLIDNQPAIKGLNET TQSQGIKALAPQSTTTISIDGQYYGKMSEKNIMEYKTKLKFKALAD >gi|284795505|gb|ADDQ01000044.1| GENE 27 26679 - 27146 500 155 aa, chain + ## HITS:1 COG:no KEGG:Elen_2113 NR:ns ## KEGG: Elen_2113 # Name: not_defined # Def: hypothetical protein # Organism: E.lenta # Pathway: not_defined # 38 154 129 245 246 65 37.0 5e-10 MLVLLLGGVVAYKFIDNQPREIIGGSYLPDEKDAKKMSKEERKKANEKEVDESKFTLSIY PEATFKNGEAIGAIYIRNEVENAYPIAVEIVEDKTGDVIYNSGAIQPGYEITEGKLSKNL AKGNYICTANVSIYDQKTKKYKGQTAAEIQIEVEE >gi|284795505|gb|ADDQ01000044.1| GENE 28 27253 - 27927 794 224 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256962314|ref|ZP_05566485.1| ## NR: gi|256962314|ref|ZP_05566485.1| predicted protein [Enterococcus faecalis Merz96] # 1 224 1 224 224 382 100.0 1e-104 MLNKKMLVSSAMLGVFSLGFAGQVLAAEGDTQTINGSEGKATTADVITRGILGDADSTNP DTPLPEGDNRWVIVTLPTAVVFESDKDKANISSPSNYKIENESGRPLKVDVSTYEVTGGN GVAALSTLNIKRSTGYAGNQTVALVKNGASKQKYTIDTELVRLANNKGDYGQTKGTGAKS TNFEFTGTMDKSKLAKDQNFVESKLTFKFTPLRMDGKTTAEANK >gi|284795505|gb|ADDQ01000044.1| GENE 29 27956 - 28270 342 104 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256962313|ref|ZP_05566484.1| ## NR: gi|256962313|ref|ZP_05566484.1| predicted protein [Enterococcus faecalis Merz96] # 1 104 1 104 104 174 100.0 2e-42 MSKTKRFVLMSIFSLSLAVFVLPIFVTASTETMIHVTGNLDPIDTKETQDSPKQEETFDR KLTVLKKGNLPRTGEAKNTIALLIGATMAFTIIVAYAKNKKINK >gi|284795505|gb|ADDQ01000044.1| GENE 30 28379 - 29716 1033 445 aa, chain + ## HITS:1 COG:SA0901 KEGG:ns NR:ns ## COG: SA0901 COG3591 # Protein_GI_number: 15926635 # Func_class: E Amino acid transport and metabolism # Function: V8-like Glu-specific endopeptidase # Organism: Staphylococcus aureus N315 # 38 245 69 279 342 107 32.0 5e-23 MKTRKIKMYSFVTMLSVVSVSLISPVAHAEGETIENRMVLSSDDQIQILDATQAPYRSIC FLYINNIVRGSGVVIGKNAILTTREVASAAANGEAINIKVNEGRTSKDDYNGTFYGKEIK YSPDNQDIAIVYLNPNEKGGNIGDEDSIVSYISSSDLQEDALVKIIGYPVNKPFATMWET TGTVISEKDEMIYYSGSAGNENLGSPVFNEKNELIGIYSSKTAKGEGLFVPLKPSLYEFI KKNVDAPLIEGETQTIEGKEGQPFAEVDARGNLGEVDAMNPNLPLPEGDDRWLKITLPTA VVFESDEKKSEITSPKNYKIENKSGRPVKVDVASYEVTDGDGVPALTTLNIQRTAGYGRN QAVSLITNGAKKAKYDINTEFVRLANNQGDYGNLKGIGEKSTNFEFGGTMDQSKLTKNQN FIESKLTLKFVPLRMDGKTTVEAKE >gi|284795505|gb|ADDQ01000044.1| GENE 31 29778 - 30128 317 116 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256962311|ref|ZP_05566482.1| ## NR: gi|256962311|ref|ZP_05566482.1| predicted protein [Enterococcus faecalis Merz96] # 1 116 32 147 147 203 99.0 3e-51 MDILTYEIMGGNGVAALNTLNIQRSAGYQGTTVIPLVNNGGTKNKYDIQKEFVRLANGQG DYDQMKGTGIKEISFEFTGTADLSKLEEEQNYIESKLTFKFIPLQMNGKTVEEINK >gi|284795505|gb|ADDQ01000044.1| GENE 32 30242 - 30694 200 150 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256962310|ref|ZP_05566481.1| ## NR: gi|256962310|ref|ZP_05566481.1| predicted protein [Enterococcus faecalis Merz96] # 1 150 1 150 150 264 100.0 1e-69 MYINKLFSTEVIKSCCCINLIDSNKSTFTQKIVVWRNGTEAEVLSFFQRNFTDMIVQSVD LITTICLLSKEEINQKAEMNFLDNYWLSTSMYTVEAVTLVNEQKEIQTFQCIVSETTDRQ ELLRRLKMKSHSNLYVKKLYGNGKCWLKKN >gi|284795505|gb|ADDQ01000044.1| GENE 33 30733 - 30825 164 30 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLTTIYSVGLLLLGALLSIVLVETVKKQNN >gi|284795505|gb|ADDQ01000044.1| GENE 34 31564 - 32019 507 151 aa, chain + ## HITS:1 COG:no KEGG:EF1097 NR:ns ## KEGG: EF1097 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 151 20 170 170 255 99.0 4e-67 MTLGIFISAGTSVYASDQLEDSEVEAVAKGLEEMYANGVTEDNFKNYVKNNFAQQEISSV EKELNVNISDASTVVQARFNWNALGSCVANKIKDEFFAMISISAIVKAAQKKAWKELAVT VLRFAKANGLKTNAIIVAGQLALWAVQCGLS >gi|284795505|gb|ADDQ01000044.1| GENE 35 32139 - 32357 69 72 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|257415712|ref|ZP_05592706.1| ## NR: gi|257415712|ref|ZP_05592706.1| predicted protein [Enterococcus faecalis AR01/DG] # 1 72 1 72 72 119 94.0 4e-26 MDAGSTPAVSIFRKVEKNKKELKPLFYEVLALFFYKQEKARYLLLHFLSHYLSKTTSFSF SIGDFGYCIEHG >gi|284795505|gb|ADDQ01000044.1| GENE 36 32829 - 33134 358 101 aa, chain - ## HITS:1 COG:no KEGG:EF1098 NR:ns ## KEGG: EF1098 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 101 1 101 101 174 100.0 1e-42 MKNSYFDGGLATYIGTSILATLITVFTLGICAPWGICMMYNWKIKHTVIDGKRLYFDGTA MQLFGHWIKWLLLTIITLGIYGFWLNIRLQQWITKHTHTLS >gi|284795505|gb|ADDQ01000044.1| GENE 37 33469 - 34609 960 380 aa, chain + ## HITS:1 COG:no KEGG:EF1099 NR:ns ## KEGG: EF1099 # Name: not_defined # Def: collagen adhesin protein # Organism: E.faecalis # Pathway: not_defined # 1 380 1 380 674 669 98.0 0 MTKSVKFLVLLLVMILPIAGALLIGPISFGAELSKSPIVDKVELDHTTLYQGEMTSIKVS FSDKENQKIKPGDTITLTLPDALVGMTENDGSPRKINLNGLGEVFIYKDHVVATFNEKVE SLHNVNGHFSFGIKTLITNSSQPNVIETDFGTATATQRLTIEGVTNTETGQIERDYPFFY KVGDLAGESNQVRWFLNVNLNKSDVTEDISIADRQGSGQQLNKESFTFDIVNDKETKYIS LAEFEQQGYGKIDFVTDNDFNLRFYRDKARFTSFIVRYTSTITEAGQHQATFENSYDINY QLNNQDATNEKNTSQVKNVFVDGEASGNQNVEMPTEESLDIPLETIEEWEPKTPTSEQAT ETSEKTDTTETAESSQPEVH Prediction of potential genes in microbial genomes Time: Sun May 15 12:57:10 2011 Seq name: gi|284795504|gb|ADDQ01000045.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont116.1, whole genome shotgun sequence Length of sequence - 1065 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 2 - 61 7.6 1 1 Tu 1 . + CDS 97 - 1056 218 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase Predicted protein(s) >gi|284795504|gb|ADDQ01000045.1| GENE 1 97 - 1056 218 319 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 4 307 10 315 317 88 28 2e-18 MTYKHLTIDELTMIESYYLQHNKPVEIANRMGRAIQTIYNVVNKFKQGKTALDYWHQYKE NKKKCGRKVIQLPAHEVDYIKEKVTLGWTPDVIIGRKERPVSCGMRTLYRLFSKGIFDID TLPMKGKRKPNGHQEKRGKQQYQRSIHDRPDNYPDFNSEFGHLGGDTIVGIHHKSAVITL VERLSKVIITIKPNGRKALDIETALNQWFSRFPKNFFKSITFDCGKEFSNWKAISNQHDI DIYFADPGTLSQRPLNENSNGILRHNGLPKSMDFREVNQTFISSVSNQRNHIPRKSLNYR TPIEIFLSYVQEAFYSNLI Prediction of potential genes in microbial genomes Time: Sun May 15 12:57:11 2011 Seq name: gi|284795503|gb|ADDQ01000046.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont117.1, whole genome shotgun sequence Length of sequence - 2808 bp Number of predicted genes - 3, with homology - 2 Number of transcription units - 3, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 133 - 2067 447 ## COG3344 Retron-type reverse transcriptase + Prom 1981 - 2040 4.5 2 2 Tu 1 . + CDS 2066 - 2131 60 ## 3 3 Tu 1 . - CDS 2141 - 2260 94 ## gi|293383968|ref|ZP_06629867.1| conserved hypothetical protein - Prom 2300 - 2359 5.3 Predicted protein(s) >gi|284795503|gb|ADDQ01000046.1| GENE 1 133 - 2067 447 644 aa, chain - ## HITS:1 COG:CAC3514 KEGG:ns NR:ns ## COG: CAC3514 COG3344 # Protein_GI_number: 15896751 # Func_class: L Replication, recombination and repair # Function: Retron-type reverse transcriptase # Organism: Clostridium acetobutylicum # 33 453 43 417 470 170 32.0 7e-42 MNQNLLEKTPKNNKLRYAEYYGMIEIYDELFNKSNEGKIFKNLMGIIISTDNILLAYRTI KRNGGSTTKGIDGVTVKDIEKLSQSEFIGKVRNRFNFYKPRKVRRVEIPKPNGKTRPLGI PSIWDRIAQQCILQVLEPICEAKFNKHSYGFRPLRSTDNAIADCMYRINKSHMQYVVDID IQGFFDEVNHVKLMRQIWTLGIRDKQLLVIIRKMLKAPIVLPDGTIKFPTKGTPQGGILS PLLSNICLNEFDWWIARQWEERECSELVPQFNSKGTRHKSHDYRKLRSSTTLKEVYIVRY ADDFKLFCKNRQEAERLFRATKMWLKERLRLPISEEKSKVTNLKKKSSEFLGITLKMVKK NHRFVCYSHVALKARKRIKRQLKDQIKRIQRKKSKITTIREIQKYNSMVIGIHNYYNVAT HVSKDFESIGSQLHRSFYNRFRNKGLTKKGNYKGHDKGILPYMESKRIQYLVNYPILPIG FVRTKTIKGRNKTLNKYTPEGRILVHKNQQSVAEWKVQWLREHPIINERATIEYNDNRIS LFIAQKGKCAITGNELFLDDMHCHHKKLWSESKDDSYKNLILLSKEMHKLVHCTDEVKIR EYIYWNKLSDSQVNKVNKLRKLVNKTIILPLCEQMPKYEQLTLF >gi|284795503|gb|ADDQ01000046.1| GENE 2 2066 - 2131 60 21 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVYHSSRQIRDLLSLTRIHEL >gi|284795503|gb|ADDQ01000046.1| GENE 3 2141 - 2260 94 39 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293383968|ref|ZP_06629867.1| ## NR: gi|293383968|ref|ZP_06629867.1| conserved hypothetical protein [Enterococcus faecalis R712] # 1 39 1 39 39 64 100.0 2e-09 MGSVGREIITFHNSSESSGTTVEGFVMKLEEQPQVKFIL Prediction of potential genes in microbial genomes Time: Sun May 15 12:57:18 2011 Seq name: gi|284795502|gb|ADDQ01000047.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont119.1, whole genome shotgun sequence Length of sequence - 1029 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 51 - 1028 451 ## COG3328 Transposase and inactivated derivatives Predicted protein(s) >gi|284795502|gb|ADDQ01000047.1| GENE 1 51 - 1028 451 325 aa, chain - ## HITS:1 COG:SMc01530 KEGG:ns NR:ns ## COG: SMc01530 COG3328 # Protein_GI_number: 15966161 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Sinorhizobium meliloti # 2 324 65 384 398 250 41.0 2e-66 ERSFTTRVGTLELKVPRTRDGHFSPTVFERYQRNEKALMASMLEMYVSGVSTRKVSKIVE ELCGKSVSKSFVSSLTEQLEPMVNEWQNRLLSEKNYPYLMTDVLYIKVREENRVLSKSCH IAIGITKDGDREIIGFMIQSGESEETWTTFFEYLKERGLQGTELVISDAHKGLVSAIRKS FTNVSWQRCQVHFLRNIFTTIPKKNSKSFREAVKGIFKFTDINLAREAKNRLIHDYIDQP KYSKACASLDDGFEDAFQYTVQGNSHNRLKSTNLIERLNQEVRRREKIIRIFPNQTSANR LIGAVLMDLHDEWIYSSRKYINFDK Prediction of potential genes in microbial genomes Time: Sun May 15 12:57:19 2011 Seq name: gi|284795501|gb|ADDQ01000048.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont129.1, whole genome shotgun sequence Length of sequence - 3559 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 20 - 907 357 ## COG3328 Transposase and inactivated derivatives + Prom 1007 - 1066 7.6 2 2 Op 1 . + CDS 1189 - 3231 933 ## COG3711 Transcriptional antiterminator 3 2 Op 2 . + CDS 3242 - 3557 326 ## LGG_02668 2-dehydro-3-deoxyphosphogluconate aldolase Predicted protein(s) >gi|284795501|gb|ADDQ01000048.1| GENE 1 20 - 907 357 295 aa, chain + ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 257 134 390 391 236 45.0 3e-62 MSNMTKSFTEEVTSFKERELHDRYAAIYMDATYIPLKRKTVAKEAIHIAVGIRPDGSKEV LSYAIAPTESITIWEEILIDLQERGVKNVLLFITDGLKGMAGAVQRFYPKARFQHCCVHV SRNISHKVRVDDRKEVCDDFKMVYQASSKKAALEARGAFAEKWKTSYPKMVESILSNDYL LTFYDFPLAIRKTIYSTNLIESFNKQIKKYSHRKEQFQNEESMERFLVSSFDTYNQKFLG RSHKGFQQAEGELEQMLSQPMENWKQSTVGKNHLHKIIDAPKSIVFSSLILFFFN >gi|284795501|gb|ADDQ01000048.1| GENE 2 1189 - 3231 933 680 aa, chain + ## HITS:1 COG:lin0501_1 KEGG:ns NR:ns ## COG: lin0501_1 COG3711 # Protein_GI_number: 16799576 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Listeria innocua # 1 512 3 514 536 209 28.0 2e-53 MNKRIREILKLIIKNPEMKLSTLTSELDLTRRQINYAINQFNEELKTKNIPLIQRSHSGN ITVPIEVIQMISQPDYDIGDDQELVVLTDSERQALIVMTLIANIDYISLDHLVDAVDVSK TTVMEDIKRTEPFIRNYSLTIRYNRMNGYQLVGSEHRILQLLSDLVKRYPIFRREMIRRK LAQDVSEEEIVHLIHNMEQMLHLSYSDESVDYLQTSARFLVSRGIKMSDKHAFFPDDVTD TPEFRMLMILVHETGWSLSKSYMEWFTLLFLTSNIFESKTTQNYDSDQELRKLISQMVEN FQNQTLILIDDREDFERRILSHLRPACFRIRYNLSLGVYSIDSLIKDSNHAILIDLMKEL IIPIENWLNKAFPNDELDLLSYYFGYQLSNHNKLNKQRQRAVVVCTNGVMVSKLVRANME KLFPEIHFLASLSVRDFYKFEADYDLVFTTTPLKSSMLQFMIEPIMTYQQQISLRYRVLS DLGITKVDRAMDELLTIIRKYANITNPVSLREELQYFLIKEDGSTPLDNFKALPSLTYYL RPSYVQIVEEEMSWERAVEVACRPLLEHQIIDSRFIADCLDQIRQPGYAGYLGMKTCIPH TTVDKGVISDGVSILVCKKPIRFPNGEDVSLILPLSFFDLTKHLRAINQIADIAKDDSLI EQLLIADDEKTVYQLLRQRS >gi|284795501|gb|ADDQ01000048.1| GENE 3 3242 - 3557 326 105 aa, chain + ## HITS:1 COG:no KEGG:LGG_02668 NR:ns ## KEGG: LGG_02668 # Name: kdgA # Def: 2-dehydro-3-deoxyphosphogluconate aldolase # Organism: L.rhamnosus # Pathway: Pentose phosphate pathway [PATH:lrh00030]; Pentose and glucuronate interconversions [PATH:lrh00040]; Arginine and proline metabolism [PATH:lrh00330]; Glyoxylate and dicarboxylate metabolism [PATH:lrh00630]; Metabolic pathways [PATH:lrh01100] # 1 105 1 105 208 115 56.0 3e-25 MRLADYPKLTVIMRGYTFDQADAILQAMQEFDHQFAVEMTMNTKGALENIHELNQRYGDT TYIGAGTVRTLEQAQACYEAGAKFLLGPHMFTKEMFSYANKKGLL Prediction of potential genes in microbial genomes Time: Sun May 15 12:57:27 2011 Seq name: gi|284795500|gb|ADDQ01000049.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont129.2, whole genome shotgun sequence Length of sequence - 17969 bp Number of predicted genes - 25, with homology - 25 Number of transcription units - 12, operones - 6 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 1 - 315 367 ## COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase 2 1 Op 2 13/0.000 + CDS 327 - 785 493 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 3 1 Op 3 10/0.000 + CDS 804 - 1082 550 ## COG3414 Phosphotransferase system, galactitol-specific IIB component 4 1 Op 4 . + CDS 1107 - 2474 1254 ## COG3775 Phosphotransferase system, galactitol-specific IIC component 5 1 Op 5 . + CDS 2489 - 3634 1291 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 6 1 Op 6 . + CDS 3661 - 4152 339 ## LGG_02663 hypothetical protein + Term 4275 - 4312 3.3 + Prom 4314 - 4373 6.4 7 2 Tu 1 . + CDS 4595 - 5794 526 ## Smon_0543 major facilitator superfamily MFS_1 + Term 5836 - 5867 3.4 8 3 Tu 1 . - CDS 5870 - 6430 330 ## COG1309 Transcriptional regulator - Prom 6516 - 6575 6.8 + Prom 6325 - 6384 6.5 9 4 Tu 1 . + CDS 6574 - 7188 653 ## gi|256957547|ref|ZP_05561718.1| conserved hypothetical protein + Term 7356 - 7408 1.1 + Prom 7327 - 7386 14.6 10 5 Op 1 . + CDS 7429 - 7812 120 ## COG2188 Transcriptional regulators 11 5 Op 2 . + CDS 7733 - 7951 78 ## gi|257886000|ref|ZP_05665653.1| conserved hypothetical protein + Term 8057 - 8106 -0.9 + Prom 8419 - 8478 3.8 12 6 Op 1 . + CDS 8500 - 9486 630 ## COG3633 Na+/serine symporter 13 6 Op 2 . + CDS 9359 - 9760 301 ## COG3633 Na+/serine symporter + Term 9820 - 9878 12.8 + Prom 10123 - 10182 8.2 14 7 Op 1 . + CDS 10297 - 10761 563 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 15 7 Op 2 . + CDS 10754 - 11050 442 ## GALLO_2119 putative PTS system, ascorbate family, IIA component 16 7 Op 3 . + CDS 11070 - 11318 121 ## COG3037 Uncharacterized protein conserved in bacteria 17 7 Op 4 . + CDS 11372 - 11695 188 ## COG3037 Uncharacterized protein conserved in bacteria 18 8 Tu 1 . - CDS 11635 - 12477 511 ## COG0534 Na+-driven multidrug efflux pump 19 9 Tu 1 . + CDS 12823 - 13491 609 ## COG0588 Phosphoglycerate mutase 1 + Prom 13515 - 13574 7.3 20 10 Op 1 9/0.000 + CDS 13594 - 13860 397 ## COG3830 ACT domain-containing protein 21 10 Op 2 . + CDS 13875 - 15218 981 ## COG2848 Uncharacterized conserved protein 22 10 Op 3 . + CDS 15237 - 15749 235 ## COG0546 Predicted phosphatases + Term 15842 - 15898 13.0 - Term 15907 - 15959 15.1 23 11 Tu 1 . - CDS 16120 - 16569 494 ## CMM_2895 hypothetical protein - Prom 16598 - 16657 6.0 + Prom 16973 - 17032 3.0 24 12 Op 1 . + CDS 17060 - 17728 772 ## COG4166 ABC-type oligopeptide transport system, periplasmic component 25 12 Op 2 . + CDS 17729 - 17968 113 ## EF3081 pheromone binding protein Predicted protein(s) >gi|284795500|gb|ADDQ01000049.1| GENE 1 1 - 315 367 104 aa, chain + ## HITS:1 COG:all4771 KEGG:ns NR:ns ## COG: all4771 COG0800 # Protein_GI_number: 17232263 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-6-phosphogluconate aldolase # Organism: Nostoc sp. PCC 7120 # 5 101 110 207 210 73 39.0 8e-14 GLLAVPAAMTPSEVDRMFKEGADIVKVFPAAVVTPRFFKDIQAPLGKLPLMGVGGISKEN AKEFFEQGASYLGLGSGMFNKQDIEELNVKNLARSMKELIEVIK >gi|284795500|gb|ADDQ01000049.1| GENE 2 327 - 785 493 152 aa, chain + ## HITS:1 COG:BH0192 KEGG:ns NR:ns ## COG: BH0192 COG1762 # Protein_GI_number: 15612755 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Bacillus halodurans # 2 147 3 148 160 90 30.0 1e-18 MELYLNEELVFRNVQAKTDSEVLAFLASEMYKKNYVKEEYIQAIQEREKEYPTGLPSTPP GIAIPHANYEMVNKTTLAIATLKDPVLFHNMENNNEQLPIQIVIMMAIGEPHGQVEMLQK IVGIIQDEPLRQEMIRAGNDTELLELLKKAVF >gi|284795500|gb|ADDQ01000049.1| GENE 3 804 - 1082 550 92 aa, chain + ## HITS:1 COG:STM3783 KEGG:ns NR:ns ## COG: STM3783 COG3414 # Protein_GI_number: 16767067 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIB component # Organism: Salmonella typhimurium LT2 # 2 92 3 92 95 70 40.0 6e-13 MKRILVACGNGIATSTVVATKVREYLQQHGIDVSTTQTKLMEVPGKVQDYDLLVTTGQFD GQTGGVPVIKGMPILTGIGADQTMEEILNLLK >gi|284795500|gb|ADDQ01000049.1| GENE 4 1107 - 2474 1254 455 aa, chain + ## HITS:1 COG:SA0238 KEGG:ns NR:ns ## COG: SA0238 COG3775 # Protein_GI_number: 15925950 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIC component # Organism: Staphylococcus aureus N315 # 11 417 11 416 419 313 43.0 4e-85 MKIIMNVFNFFIDAGPTVMLPVIITIIGLIFGLKISRAFKSGLTLGIGFAGIKLILDFMT TNVGPAAKAMVDRTGVKLDALDVGWGSIAAVTWASPIIPILIFAILLVNIVLLILKRTHT LDVDIWNYHHMAIVGVMVYFVTKNVFLGVGASVVMAIATFKISDWSQPMVESFFGIPGVS LPTVSALSSLVIAWPLNWLLDRIPLFRKSKFTIKDAQKYLGFFGDSMIMGLVIGMVIGVL AGYDIKAVLQLGVSMSAVLVLIPKMTSLFMEGLMPISDAAQKWSQKKFKGTRLFIGLDAA VVVGNPDVITTALIIIPLTIALALVLPGNRVLPFADLAVVPFRVAMVVALTRGNLLKNII IGLVVTASLLWCGSATAPMLTAIAKSVGINLGTSSMLISSFAATSMIQSYLVFIAFAYKP IIGIPVLLLAFAGAWYYFDGIKKVNHEMDEPLKAQ >gi|284795500|gb|ADDQ01000049.1| GENE 5 2489 - 3634 1291 381 aa, chain + ## HITS:1 COG:SMb20510 KEGG:ns NR:ns ## COG: SMb20510 COG4948 # Protein_GI_number: 16264240 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Sinorhizobium meliloti # 1 381 1 382 382 461 56.0 1e-130 MKISDVTVYKVKPRWIFVKISTDEGIEGWGEMISGTKTETVVAGAYEIGNRLIGRNPFEI ERLFQEMHRSFFRGGPINGTIVSGLEMALWDIKGKAFNVPVYELLGGAARDKIKVYSWIG GDRPSEVAEQAQDRFDRGFTAVKMNATEELHYIDSYQKVDEVVERVASIRERFGDAMDIG VDFHGRVHKPMAKVLAKALEPFHPMFLEEVVLPENEEHFKEVADSVAVPLATGERLYTRW QFKNLFKQGTVDIIQPDVALCGGILETRKIAAMAEAYDMAVAPHAPYGPVALAATLQVDS CTPNVFIQEQSLGIHYNKGFDLLDFVKNKEVFQYKDGYVDLPSKPGLGLEMDEDKIKEIA QEGLIWTNPQWKNYDGTIAEW >gi|284795500|gb|ADDQ01000049.1| GENE 6 3661 - 4152 339 163 aa, chain + ## HITS:1 COG:no KEGG:LGG_02663 NR:ns ## KEGG: LGG_02663 # Name: not_defined # Def: hypothetical protein # Organism: L.rhamnosus # Pathway: not_defined # 1 132 1 133 199 62 23.0 6e-09 MAEALLITVFLGLLIILQIIDQKKIIVFAQSSPVRKSLSILLTVAILLIFWPEHLTDQIK LVAFASVILINGFLKEGLAKDSVVRFGVLNGNFNRYPQVQVEKLGDDKSFISFYKSKNNS FSMIFDKDQTEMMDVFQELDIHSKITLDQSSEEKRAVVKKDNE >gi|284795500|gb|ADDQ01000049.1| GENE 7 4595 - 5794 526 399 aa, chain + ## HITS:1 COG:no KEGG:Smon_0543 NR:ns ## KEGG: Smon_0543 # Name: not_defined # Def: major facilitator superfamily MFS_1 # Organism: S.moniliformis # Pathway: not_defined # 14 384 5 380 383 158 29.0 4e-37 MRDQTSGKMIRFYYTSLQFLYWMMFCSVYGFATLFLIYFKIDPAKIGGILALVNIVSTVL QPFISQVIIKKRKIPLITVLKTMIAGLGVILLAGVLIPNLPIITYILGGILVVSMQSFLN ALAFEYSNTGYRINFGFSRAGGSFSYVVTSFLLGQLLAIYSAAILPILVIVEAVIFFVIL HLLPDVKNQEVFPMTKEQDRSVSLRKKYPFLILLFLGFSFLFTFHTMINSFLAQIFENIH GGSKEVGIALMIAALCELPGMIFFEQLVKKKSSKFWLSVASISFAVRGFMMLLASSILMM EMTHLLQAFSFALFIPASAYLFNQFLADDDRVFGQTMIIIATTLGGVIGNVLGGSLLQHF GVWEMLIFGTGFAVLGALLTILGIRKIPKLSEDSGDITK >gi|284795500|gb|ADDQ01000049.1| GENE 8 5870 - 6430 330 186 aa, chain - ## HITS:1 COG:BH0719 KEGG:ns NR:ns ## COG: BH0719 COG1309 # Protein_GI_number: 15613282 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 3 170 4 172 188 89 35.0 3e-18 MKKEDRRVKKTEKALAEALSKLLVDKKIQNITIRELTETADLHRSTFYTHYTDIYDLYEK LENSFFQDLDEIISYDTTHSYEDLYAHLIDYVYTNTFVYKLFVINHGDIQFQKRLNNLIE ENYLKIWLQEDKKTVITEEMRYFTIYHIQGCLSVLNHWVESNFAYSKKKMLTFLRLLNDN IEPIMP >gi|284795500|gb|ADDQ01000049.1| GENE 9 6574 - 7188 653 204 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256957547|ref|ZP_05561718.1| ## NR: gi|256957547|ref|ZP_05561718.1| conserved hypothetical protein [Enterococcus faecalis DS5] # 1 204 2 205 205 370 100.0 1e-101 MELAFKQLEKKDYKKAIQFAIKGMHFDWYTKNKLLLNLYGRYFWYLELNRATQIIALYAD DELAGVLLADIKGKSKKHHSFSQKLYVKLFDFLQNAFVKDSKGGYDDTNEELLSDYLKKH SPDGEIVFLAANPDLKIKGIGSKLLKEFERREQGKEVFLFTDSGCTYQFYERRGFERKKE KDIVMKILNKEVDLRCMLYSKIIQ >gi|284795500|gb|ADDQ01000049.1| GENE 10 7429 - 7812 120 127 aa, chain + ## HITS:1 COG:BH3917 KEGG:ns NR:ns ## COG: BH3917 COG2188 # Protein_GI_number: 15616479 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 108 24 132 261 81 41.0 3e-16 MPKYKEIALALKERIVEGKYQEGSKLPEQESLAREFKTSCVTIRKAIQLLIDEGLLYTRR GSGTFIRSNIRQDNENVTQVNNVFGTSSQENTNVTSKIIRFDVRFPTDYERRLSATYFRS PSCKSWV >gi|284795500|gb|ADDQ01000049.1| GENE 11 7733 - 7951 78 72 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|257886000|ref|ZP_05665653.1| ## NR: gi|257886000|ref|ZP_05665653.1| conserved hypothetical protein [Enterococcus faecium 1,231,501] # 8 72 366 430 430 140 100.0 3e-32 MSGFRQIMKGGFLQPTSDPLPANHGYKKIGILSGLGGEIFTYHFFIPQAASSYLEFVEQM REVEAALQTTFQ >gi|284795500|gb|ADDQ01000049.1| GENE 12 8500 - 9486 630 328 aa, chain + ## HITS:1 COG:NMA0298 KEGG:ns NR:ns ## COG: NMA0298 COG3633 # Protein_GI_number: 15793312 # Func_class: E Amino acid transport and metabolism # Function: Na+/serine symporter # Organism: Neisseria meningitidis Z2491 # 7 293 4 294 409 248 48.0 8e-66 MVKLYRGDYLLDKFLDMSLVQRISCGIIVGIIVGIFLPSWTFITILGTVFVSCLKAIAPL LVFFLTAASIAKHKVGNETYVKPILFLYLGGTFLSALVAVVVSSIFTIPITLQEQVSEKA PQNIGSVLSTMLTNVTQNPIQAIIESNYLGVLFWAVLLGLALRSHTETTKEVVDQVSVAL SYVVQLIIAFAPIGILGLVYQSISTTGLSGLAEYLQLVLVLVGTMLFVALVVYPLLTFLF IKENPYPLIFFCLKESAVPAFFTRSSAANIPINMMLAERLKLTKESYAISIPLERPSIWG RCCNDYRDDIDDGTNIRDRSVLCFKIDP >gi|284795500|gb|ADDQ01000049.1| GENE 13 9359 - 9760 301 133 aa, chain + ## HITS:1 COG:NMA0298 KEGG:ns NR:ns ## COG: NMA0298 COG3633 # Protein_GI_number: 15793312 # Func_class: E Amino acid transport and metabolism # Function: Na+/serine symporter # Organism: Neisseria meningitidis Z2491 # 13 121 301 409 409 132 66.0 2e-31 MRSRFRWSDHQYGGAAVTITVMTLTTVQTLGIEASFASKLILSLLAAIAACGASGVAGGS LLLIPLACSLFGISNEIAMQVVGIGFIIGVIQDSVETALNSSSDLLFTAIGELSARKRNG EAISLKDSLSESN >gi|284795500|gb|ADDQ01000049.1| GENE 14 10297 - 10761 563 154 aa, chain + ## HITS:1 COG:BH0221 KEGG:ns NR:ns ## COG: BH0221 COG1762 # Protein_GI_number: 15612784 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Bacillus halodurans # 4 135 2 133 147 111 39.0 4e-25 MLSKVIKDEYIQLDVQANNFEEAIRKALQPFLEADVVTEKYVETILKIYEETGPYIVITE NIALPHATVESGAKDVAIGFMRLKTPVTSGHRTNDPVKYLFSLSAKNNQAHIELLSELAN LLGNPDFLKFIKVVSSREEFKNYIEKAEGENKHE >gi|284795500|gb|ADDQ01000049.1| GENE 15 10754 - 11050 442 98 aa, chain + ## HITS:1 COG:no KEGG:GALLO_2119 NR:ns ## KEGG: GALLO_2119 # Name: not_defined # Def: putative PTS system, ascorbate family, IIA component # Organism: S.gallolyticus # Pathway: Ascorbate and aldarate metabolism [PATH:sga00053]; Phosphotransferase system (PTS) [PATH:sga02060] # 4 89 2 87 91 127 81.0 1e-28 MNSHKALVACRAGVGSSLMLKIKVNEVVKENNFPLEVEHSSLDGVPGFQGDMIITLPDVA NELIEKNLPQKIVGIANIVDKNEIKIKLEEAFIELEKQ >gi|284795500|gb|ADDQ01000049.1| GENE 16 11070 - 11318 121 82 aa, chain + ## HITS:1 COG:STM2342 KEGG:ns NR:ns ## COG: STM2342 COG3037 # Protein_GI_number: 16765669 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 75 7 81 463 65 41.0 2e-11 MDFIISFLSTPAVLLGLVAMIGLLAQKKSGTEVLTGTSKTIIGFLIFNAGGTIMTGALQN FNTLFQTGFLIKGVLLLKQRQH >gi|284795500|gb|ADDQ01000049.1| GENE 17 11372 - 11695 188 107 aa, chain + ## HITS:1 COG:STM2342 KEGG:ns NR:ns ## COG: STM2342 COG3037 # Protein_GI_number: 16765669 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 2 105 110 212 463 85 44.0 2e-17 MNLVIARITPFKNIFFTTGHSLFFACVLSLILKAHNFSDVAAIIVGGLLLGFFSAVLPQL CQPFMRKITGSDATAIGHFNMVGYALSGYIGKLFSKYKDRTTEDIIG >gi|284795500|gb|ADDQ01000049.1| GENE 18 11635 - 12477 511 280 aa, chain - ## HITS:1 COG:L170983 KEGG:ns NR:ns ## COG: L170983 COG0534 # Protein_GI_number: 15672149 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Lactococcus lactis # 1 266 22 287 446 238 52.0 8e-63 MGNIFQQFYNIVDMIIVGQTIGKEALAAVGATGSITFLIIGFAQGLTAGLSIITAQRFGA QDFRGVKKSFAVAIIISFTVTAILTVLSLVFLRPLLLLMQTPPDIIQQAQEFICVILGGM FASMAFNLLSNMIRALGDSRTPLFLLIFAVIINVILDLVFIINFHMGIAGAGYATVIAQI SASLMCVIYIKRKIPLLQVSKSDFKIDKDTIFTHLNAGLPMAFQSSIIAIGAVVLQSALN SLGTDVVAAQAAAGRIDQFATQPMMSSVVRSLYLLNSLPI >gi|284795500|gb|ADDQ01000049.1| GENE 19 12823 - 13491 609 222 aa, chain + ## HITS:1 COG:NMA1801 KEGG:ns NR:ns ## COG: NMA1801 COG0588 # Protein_GI_number: 15794692 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Neisseria meningitidis Z2491 # 1 222 1 227 227 241 51.0 7e-64 MDVVLMRHGESEANFENYWTGWLDVSLTEKGQEQARKAGEKIKNAQIEFDAAFTSVLKRA SLTCQIILEESDQLWIPTFKTWRLNERHYGALVGKNKDEMAREFGADQVKRWRRDYYEMP PLVEENHFDRRYAQLADQDIPHGENLQMTVQRVAPLWQDEIAPLLGSGKNVLITGHGNSL RALVKYLEDVPEDQMDTIDIPNAQPIHYRFDKNLQIVNKSIL >gi|284795500|gb|ADDQ01000049.1| GENE 20 13594 - 13860 397 88 aa, chain + ## HITS:1 COG:lin0537 KEGG:ns NR:ns ## COG: lin0537 COG3830 # Protein_GI_number: 16799612 # Func_class: T Signal transduction mechanisms # Function: ACT domain-containing protein # Organism: Listeria innocua # 1 88 1 89 89 89 64.0 1e-18 MKAILTVVGKDKVGIIAGVSQKLAELNINILDVSQTIMEDYFTMMMMLQMQPEADLEAIK QALSQVENTLSVKISIQNEEIFNAMHKL >gi|284795500|gb|ADDQ01000049.1| GENE 21 13875 - 15218 981 447 aa, chain + ## HITS:1 COG:lin0538 KEGG:ns NR:ns ## COG: lin0538 COG2848 # Protein_GI_number: 16799613 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 447 1 451 451 646 79.0 0 METKQILETIRMVEEENLDIRTITMGISLLDCIDASTEKTCQNIYNKITSKAKNLVKVGD EIASEFGIPIINKRISVTPIAIVASASGGQDCVAFARVLDKAAKAVGINFIGGYSALVEK GYQGADLSLIQSIPEALAETEFVCSSVNIGSTRAGINMDAVKLMGETIKQTAEASDMGCA KLVVFANAVEDNPFMAGAFHGVGEADCEINVGVSGPGVVKRALEKVKGESFDVVAETVKK TAFKITRMGQLVGQIASERLHVPFGIVDLSLAPTPAVGDSVALILEEMGLEAVGTHGTTA ALALLNDAVKKGGVMACNHVGGLSGAFIPVSEDAGMIKAVEEGYLNLEKLEAMTAICSVG LDMIAIPGDIPAETIAAMIADEAAIGVINHKTTAVRIIPAKDKKVGDSVEFGGLLGTAPV MRTNSAKSTDFIQRGGRIPAPIHSFKN >gi|284795500|gb|ADDQ01000049.1| GENE 22 15237 - 15749 235 170 aa, chain + ## HITS:1 COG:SP0805 KEGG:ns NR:ns ## COG: SP0805 COG0546 # Protein_GI_number: 15900698 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Streptococcus pneumoniae TIGR4 # 2 124 6 126 190 62 27.0 6e-10 MFDSYIWDFDGTLFDTYPIMLDSMMKALEDRQVVADPKAVYRLLKEKSSKALTEKYHLDF REFSDDFHQYETLDTRQPVTFDHVYDTLTQLKQQGSKHYILTHRTIASTRELLVKEGMLE FFEENARRLALIFLPPYSPQLNLMEGVWKWLKESVILTTSRKSNSRSAVS >gi|284795500|gb|ADDQ01000049.1| GENE 23 16120 - 16569 494 149 aa, chain - ## HITS:1 COG:no KEGG:CMM_2895 NR:ns ## KEGG: CMM_2895 # Name: not_defined # Def: hypothetical protein # Organism: C.michiganensis # Pathway: not_defined # 1 149 1 158 162 80 38.0 2e-14 MKLAEALLLRRDLESKLTLLREEIASSAVIQEGDTLDRSIDDLLLDYETTNQEFAQLVIA INQRNAVAKIGEQETIAAALEKREALRRSHAMLTATLEAAKVAPRMGRNEIRMIRTIDTK QITDRLNQTAKALRELDGQIQQTNWLVDL >gi|284795500|gb|ADDQ01000049.1| GENE 24 17060 - 17728 772 222 aa, chain + ## HITS:1 COG:lin0190 KEGG:ns NR:ns ## COG: lin0190 COG4166 # Protein_GI_number: 16799267 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 1 216 4 221 551 154 41.0 1e-37 MKKGLVVVGILSFLLAGCSTTGSSAKETDPEVQEISVSLPAELTTLDTTQTTDKVTFTVI QHLFEGSYRFDEKSQPVPGLAEEAVISEDGKTYTFKLKEEAKWSDGQQVQAADFAYAWKK LVDPKTMGPNAYLLDNVVNSQDIREGKADIATIGLETPDEKTFVVHLEQLQPSFLSVVSI GWLAPQRQSYVEEKGTAYGKTSEDLLYTGPFILKDWQQTGAE >gi|284795500|gb|ADDQ01000049.1| GENE 25 17729 - 17968 113 79 aa, chain + ## HITS:1 COG:no KEGG:EF3081 NR:ns ## KEGG: EF3081 # Name: not_defined # Def: pheromone binding protein # Organism: E.faecalis # Pathway: ABC transporters [PATH:efa02010] # 2 71 231 300 547 85 60.0 4e-16 MLAKNPEYYDQAVVKLDKIKGSTIKEENTGIQLFESGELDLQKISGLYVQQYQNNDSLVT QKDIANYFLDFMICQIKLE Prediction of potential genes in microbial genomes Time: Sun May 15 12:58:00 2011 Seq name: gi|284795499|gb|ADDQ01000050.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont130.1, whole genome shotgun sequence Length of sequence - 12812 bp Number of predicted genes - 13, with homology - 11 Number of transcription units - 7, operones - 3 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 57 - 557 457 ## COG1335 Amidases related to nicotinamidase - Prom 586 - 645 7.8 + Prom 530 - 589 4.4 2 2 Tu 1 . + CDS 728 - 2998 2505 ## COG2918 Gamma-glutamylcysteine synthetase + Term 3007 - 3055 11.0 + Prom 3035 - 3094 6.2 3 3 Tu 1 . + CDS 3189 - 3290 175 ## + Term 3378 - 3428 7.2 - Term 3372 - 3409 0.2 4 4 Tu 1 . - CDS 3505 - 3957 613 ## COG5506 Uncharacterized conserved protein - Prom 4082 - 4141 5.0 + Prom 3947 - 4006 3.4 5 5 Op 1 . + CDS 4071 - 4145 72 ## 6 5 Op 2 11/0.000 + CDS 4142 - 5089 907 ## COG4606 ABC-type enterochelin transport system, permease component 7 5 Op 3 10/0.000 + CDS 5086 - 6051 826 ## COG4605 ABC-type enterochelin transport system, permease component 8 5 Op 4 5/0.000 + CDS 6048 - 6803 274 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 9 5 Op 5 . + CDS 6842 - 7795 1263 ## COG4607 ABC-type enterochelin transport system, periplasmic component + Term 7806 - 7843 3.2 10 6 Op 1 . + CDS 8238 - 9881 1726 ## COG4166 ABC-type oligopeptide transport system, periplasmic component 11 6 Op 2 . + CDS 9903 - 11123 1359 ## COG2195 Di- and tripeptidases + Term 11125 - 11177 17.1 + Prom 11130 - 11189 3.0 12 7 Op 1 . + CDS 11209 - 11766 281 ## PROTEIN SUPPORTED gi|116511539|ref|YP_808755.1| SSU ribosomal protein S5P alanine acetyltransferase 13 7 Op 2 . + CDS 11801 - 12412 863 ## COG4493 Uncharacterized protein conserved in bacteria + Term 12475 - 12540 20.0 Predicted protein(s) >gi|284795499|gb|ADDQ01000050.1| GENE 1 57 - 557 457 166 aa, chain - ## HITS:1 COG:L125244 KEGG:ns NR:ns ## COG: L125244 COG1335 # Protein_GI_number: 15674036 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Lactococcus lactis # 5 164 18 175 176 135 44.0 4e-32 MKNRALLLIDFQKGIESPSQQLYRLPAVLEKVNQRIAVYRQHHAPIIFVQHEEIELPFGS DSWQLFEKLDAQPTDFFIRKTHANAFYQTNLNDLLTEQDVQTLEIAGVQTEFCVDTTIRM AHGLGYTCLMTPKTTSTLDNGHLTAAQIIQHHEAIWAGRFLTFLSL >gi|284795499|gb|ADDQ01000050.1| GENE 2 728 - 2998 2505 756 aa, chain + ## HITS:1 COG:PM1048_1 KEGG:ns NR:ns ## COG: PM1048_1 COG2918 # Protein_GI_number: 15602913 # Func_class: H Coenzyme transport and metabolism # Function: Gamma-glutamylcysteine synthetase # Organism: Pasteurella multocida # 21 480 21 481 481 390 47.0 1e-108 MNYRELMQKKNVRPYVLMARFGLEKENQRSTREGLLATTDHPTVFGNRSYHPYIQTDFSE TQLELITPVANSGTEMLRFLDAIHDVARRSIPEDEMLWPLSMPPQLPTKDEEIKIAKLDQ YDAVLYRRYLAKEYGKRKQMVSGIHFNFEYDQALIQQLYDEQSEVTDCKQFKTKVYMKVA RNFLRYRWLITYLFGASPVSEDGYFRVYDDQPQEPIRSIRNSTYGYRNHDNVKVSYASLE RYLEDIHRMVENGLLSEEKEFYAPVRLRGGKQMSDLPKTGIRYIELRNLDLNPFSRLGIV EDTVDFLHYFMLYLLWTDEKEEADEWVKTGDIFNEQVALGHPHETIKLIAEGDRIFSEMI DMLDALGIRKGKEVVGKYYQQLRNPQDTVSGKMWTIIQENSNSELGNIFGNQYQSMAFER PYQLAGFREMELSTQIFLFDAIQKGLEIEILDEQEQFLKLQHGEHIEYVKNANMTSKDNY VVPLIMENKTVTKKILSAAGFHVPGGEEFSSFIEAQEAHLRYANKAFVVKPKSTNYGLGI TIFKEGASLEDFTEALRIAFKEDTAVLIEEFLPGTEYRFFVLDNDVKAIMLRVPANVTGD GKHTVEELVAAKNSDPLRGTNHRAPLELIQLNDLEKLMLKEQGLTIYSVPEKEQIVYLRE NSNVSTGGDSIDMTDVIDDSYKQIAIEAVAALGAKICGIDLIIPDKDVKGTRDSLTYGII EANFNPAMHMHVYPYAGKGRRLTMDVLKLLYPEVVQ >gi|284795499|gb|ADDQ01000050.1| GENE 3 3189 - 3290 175 33 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSIEATLELMISFATLVALLIFGILEATKNDKK >gi|284795499|gb|ADDQ01000050.1| GENE 4 3505 - 3957 613 150 aa, chain - ## HITS:1 COG:BS_yueI KEGG:ns NR:ns ## COG: BS_yueI COG5506 # Protein_GI_number: 16080228 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 124 1 122 132 71 31.0 5e-13 MANDDLQQRLDKGMYGTPLVNPEEQHKYMGTFRERCRLSMTVAEMKDTQNQQHLLEELAK HPEVTVLLNGEISSDLQSTYIKLLNQHGATFKIVNNFVENNPDSLGLLLAEKHAVDEPVI DVTEKYPQATETSKEEPTAKKGFWQKLFHS >gi|284795499|gb|ADDQ01000050.1| GENE 5 4071 - 4145 72 24 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MMVFSYTVTKNENHSQLNKNGVFS >gi|284795499|gb|ADDQ01000050.1| GENE 6 4142 - 5089 907 315 aa, chain + ## HITS:1 COG:BH1025 KEGG:ns NR:ns ## COG: BH1025 COG4606 # Protein_GI_number: 15613588 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type enterochelin transport system, permease component # Organism: Bacillus halodurans # 1 314 1 314 317 275 51.0 6e-74 MKKIGLFVLLLLFSLLSLVIGVKDIALSQLFQLDAQQQFVLFTTRVPRTLSLIIAGSTMS ISGLIMQQLTQNKFVAPSVAGTTDSARLGILVVMLFFPTAPFLYRTAIAFIFALSGTLLF LALIRLLPSKNQVMVPLVGVMFGNILGSIATFFAYQYQLVQNMSAWLQGNFSTVMKGNYE WLFLMIPLWFVIYLFAYHFTVVGMGEAFANSLGVHYQRIQFLGLTLVALASAIVLLMVGN IPFLGVVIPNLVSLRYGDHMKNTLWLTGICGSLFLLICDILARVLIAPYEIPVSVVVGTL GSILFILLLLRGRKQ >gi|284795499|gb|ADDQ01000050.1| GENE 7 5086 - 6051 826 321 aa, chain + ## HITS:1 COG:BS_yclO KEGG:ns NR:ns ## COG: BS_yclO COG4605 # Protein_GI_number: 16077449 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type enterochelin transport system, permease component # Organism: Bacillus subtilis # 12 318 7 313 315 208 41.0 1e-53 MKRPLKKWLSLLLLLAAVVIVSLCYLTYNTYGNWSFALALRGKKLLAFIFVGIAAAFSTI SFQTVTQNHFLTPNILGMDSLYVFVQTVLFFLLGGAQALGQVSLGSFLMNVFLMVFLSTS LSYFLLRKNQSDLFLLLMIGMILGTFFSSISTFLQVIMDPNEYDLLQGKLFASFGNVNSQ YLVFVGVAVLIICGILWRESYRLDVLHLGNHQAQNLGIAVSQFQLVLLCLISSLVGLSTA LVGPITFLGFIVANMSYQFMKTYRHRELFVAGSLIAVFLLVFGQLMVEQVFHLNTPLSVV IQFVGGVYFIWKIIAERKQRT >gi|284795499|gb|ADDQ01000050.1| GENE 8 6048 - 6803 274 251 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 223 1 226 245 110 29 7e-24 MIQMSDVSKKYGDKFVVSDIDLPISEGKLTAFIGPNGAGKSTLLAMMSRLIPKDTGEIYL DKQEVKTWKQSAFSQKIALLKQANGVQLKLTVRELVNFGRFPYSKGRLKSADHEKVTEAL EQLGLTEMAEEYIDTLSGGQLQRAYIAMILAQDTDYILLDEPLNNLDMNYAVQMMQILKR LVDELGKTILIVLHDINFAASYADEIVAMKGGKLYAHGATEEVIQTSILNDLYEMNIRIC EIEGKRFCLYH >gi|284795499|gb|ADDQ01000050.1| GENE 9 6842 - 7795 1263 317 aa, chain + ## HITS:1 COG:BS_yclQ KEGG:ns NR:ns ## COG: BS_yclQ COG4607 # Protein_GI_number: 16077451 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type enterochelin transport system, periplasmic component # Organism: Bacillus subtilis # 3 317 2 316 317 269 48.0 5e-72 MKKKFLAMMAVSMMGLLMLSACQTNKKTADSATTETTAKTEVTVKDTNGQLTVPKNPKKV VVFDNGSLDTMDALGVGDRVVGAPTKNIPAYLEKYQKVESAGGIKEPDLEKINQLKPDLI IISGRQQDYQEQLKAIAPTIYLAVDAKNPWASTKQNIETLGTIFDKEEVAKEKITGLEKE IADVKKQAEASANDALVVLVNEGQLSAYGKGSRFGLIHDTFGFKAADDKIEASTHGQSVS YEYVLEKNPGILFVVDRTKAIGGDDSKDNVAANELIQKTDAGKNDKVIMLQPDVWYLSGG GLESMHLMIEDVKKGLE >gi|284795499|gb|ADDQ01000050.1| GENE 10 8238 - 9881 1726 547 aa, chain + ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 2 545 4 548 549 384 38.0 1e-106 MKLGKKVVGLIATGFLLAACGGTKEAAEKVDSGNLAAEQKISISSPAPISTLDTTQTTDK NTFTMAQHLFEGLYRFDDDSATVPALAKDVKISDDGRKYHFTLREGIKWSNGEPITAQDF VYSWKKLVTPATIGPNAYLLDSVKNSFEIRNGEKSVDELGISAPNDKEFIVELKQAQPSF LAVVSIAWLAPQNQKFVEAQGKDYALDSEHLLYSGPFTLANWDATSDTWTLKKNPEYYDA DQVKLEEVAVSTIKEDNTGINLYQANELDLVRINGQYVQQYQEDPGYVSHPDVANYFLDF NKKEGTPLANVHLRKAIGQAIDKEALTQSVLNDGSKPLNGLIPSKLYANPETDEDFRAYS GEYLKNDVKKAQAEWTKAQADVGKKVKLSLLAADTDQGKRIAEYVQSQLQENLPGLEITI SSQPSNNVNQSRREKNYELSLSGWIAGSSELDSYFNLYAGESSYNYGNYHNAKYDQLVED ARTINANNPEKQFAEYKEAEDILLNQDAAQVPLYQSASNYLINPKLKGISYHLYGDYFHL RNAYLTE >gi|284795499|gb|ADDQ01000050.1| GENE 11 9903 - 11123 1359 406 aa, chain + ## HITS:1 COG:FN0733 KEGG:ns NR:ns ## COG: FN0733 COG2195 # Protein_GI_number: 19704068 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Fusobacterium nucleatum # 4 405 9 410 412 454 54.0 1e-127 MEKLVERFLTYVKVNTRSDANSQTTPTTVGQVVLAKMIETELHELGLADVHYNEQNGFLT ARLPGNQPAAKSIGLIAHLDTADFSADNIRPQVITNYDGQDVLLNQEQGIVLSVAEFPNL KEYQGETLITTDGTTLLGADDKAGIVEILAAVEYFLAHPEVARGDVWLAFGPDEEIGRGA DQFDAPNFPVAFAYTIDSGRVGHFEYETFNAAQAVITIEGTSVHPGTAYGSLVNAIKLGE QLDQSLPQKEVPEQTRGNEGFYLLNKFTGSIEKAELVYIIRDHDQENFQARKQFLEKQVQ RLNALADKPRLTITFQDQYYNMKEIIEKDWTPVELAVQAMESCDIEPIITPFRGGTDGSK ISFMGIPTPNLFTGGENFHGQYEFITVESMAKAVQTIIAIIRLNAN >gi|284795499|gb|ADDQ01000050.1| GENE 12 11209 - 11766 281 185 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116511539|ref|YP_808755.1| SSU ribosomal protein S5P alanine acetyltransferase [Lactococcus lactis subsp. cremoris SK11] # 1 151 1 145 186 112 40 1e-24 MNYPLIFAENQRIETERLILRPVTLADAEDMYEYASDEETVRYVFLKNQTIAETRQNIAK FFMGEPLGKYGIEVKETGKMIGTIDLRVNETNNIGELGYVLNRAFWGNGYMPEAATALVE LGFAKMKLMRIFALHDQDNPASGRVMEKIGFTYEGTLPNARISKGKIVTDVYRGMTLETW QNRQK >gi|284795499|gb|ADDQ01000050.1| GENE 13 11801 - 12412 863 203 aa, chain + ## HITS:1 COG:lin1053 KEGG:ns NR:ns ## COG: lin1053 COG4493 # Protein_GI_number: 16800122 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 4 201 6 203 204 160 42.0 1e-39 MLMFTEKEFAAFEVAGLDERMAVIRAQIQPIFQELDTYFAEQLAPELGTELFVHIAQHRR RTVYPPENTWSALSPNKRGYKMQPHFQLGIWGDYVFMWLSFIDNPKNEKQIAQAFLENQQ LFQALPEDTYVSLDHTVPQITPLPETDLEKALTRFRDVKKGEFEIGRIIPKDSALWQTPE KARAYMLATYQQLLPLYQLAVAQ Prediction of potential genes in microbial genomes Time: Sun May 15 12:58:57 2011 Seq name: gi|284795498|gb|ADDQ01000051.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont131.1, whole genome shotgun sequence Length of sequence - 157650 bp Number of predicted genes - 156, with homology - 150 Number of transcription units - 64, operones - 36 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 55 - 768 541 ## COG1011 Predicted hydrolase (HAD superfamily) - Prom 900 - 959 6.5 + Prom 768 - 827 7.3 2 2 Op 1 . + CDS 944 - 1030 84 ## 3 2 Op 2 . + CDS 1096 - 2811 246 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 + Term 2817 - 2852 4.1 - Term 2795 - 2849 14.6 4 3 Tu 1 . - CDS 2855 - 3865 941 ## COG0180 Tryptophanyl-tRNA synthetase - Prom 4054 - 4113 10.7 + Prom 4040 - 4099 7.0 5 4 Tu 1 . + CDS 4225 - 4623 457 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family + Term 4637 - 4682 3.4 + Prom 4868 - 4927 5.2 6 5 Tu 1 3/0.200 + CDS 4966 - 5628 918 ## COG4862 Negative regulator of genetic competence, sporulation and motility + Term 5629 - 5677 8.4 + Prom 5635 - 5694 6.3 7 6 Op 1 7/0.000 + CDS 5719 - 6897 689 ## COG4469 Competence protein 8 6 Op 2 . + CDS 6945 - 8756 2325 ## COG1164 Oligoendopeptidase F + Term 8765 - 8809 12.5 - Term 8746 - 8803 15.8 9 7 Op 1 1/0.300 - CDS 8848 - 9507 670 ## COG2761 Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis 10 7 Op 2 . - CDS 9571 - 10149 740 ## COG4116 Uncharacterized protein conserved in bacteria - Prom 10173 - 10232 3.6 + Prom 10075 - 10134 6.5 11 8 Op 1 6/0.000 + CDS 10346 - 11020 737 ## COG2357 Uncharacterized protein conserved in bacteria 12 8 Op 2 7/0.000 + CDS 11033 - 11830 725 ## COG0061 Predicted sugar kinase 13 8 Op 3 1/0.300 + CDS 11838 - 12731 261 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit 14 8 Op 4 . + CDS 12762 - 14123 1627 ## COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain) + Term 14190 - 14236 7.2 - Term 14177 - 14222 10.0 15 9 Tu 1 . - CDS 14241 - 14870 789 ## COG3142 Uncharacterized protein involved in copper resistance + Prom 14911 - 14970 3.7 16 10 Tu 1 . + CDS 15000 - 15845 680 ## COG0500 SAM-dependent methyltransferases + Term 16042 - 16081 0.3 + Prom 16004 - 16063 10.4 17 11 Tu 1 . + CDS 16157 - 16663 597 ## COG0219 Predicted rRNA methylase (SpoU class) + Term 16682 - 16725 2.0 + Prom 16669 - 16728 4.8 18 12 Op 1 1/0.300 + CDS 16880 - 17524 719 ## COG0406 Fructose-2,6-bisphosphatase 19 12 Op 2 . + CDS 17551 - 20160 2846 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member + Term 20171 - 20217 8.2 - Term 20155 - 20209 11.1 20 13 Tu 1 . - CDS 20227 - 21186 837 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase - Prom 21209 - 21268 6.1 + Prom 21322 - 21381 5.2 21 14 Op 1 . + CDS 21449 - 21955 505 ## COG4708 Predicted membrane protein + Term 21990 - 22029 0.1 + Prom 22091 - 22150 7.2 22 14 Op 2 . + CDS 22193 - 23398 1347 ## COG2348 Uncharacterized protein involved in methicillin resistance + Term 23400 - 23470 19.2 - Term 23394 - 23446 18.0 23 15 Op 1 3/0.200 - CDS 23454 - 24089 681 ## COG4684 Predicted membrane protein 24 15 Op 2 3/0.200 - CDS 24093 - 24647 563 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase 25 15 Op 3 . - CDS 24644 - 25417 861 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase 26 15 Op 4 . - CDS 25433 - 26425 1341 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases - Prom 26514 - 26573 5.5 + Prom 26553 - 26612 7.3 27 16 Op 1 4/0.100 + CDS 26689 - 27231 663 ## COG1396 Predicted transcriptional regulators 28 16 Op 2 30/0.000 + CDS 27257 - 28342 1218 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components 29 16 Op 3 36/0.000 + CDS 28361 - 29167 889 ## COG1176 ABC-type spermidine/putrescine transport system, permease component I 30 16 Op 4 25/0.000 + CDS 29167 - 30003 838 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 31 16 Op 5 . + CDS 30000 - 31073 1195 ## COG0687 Spermidine/putrescine-binding periplasmic protein + Term 31162 - 31231 21.7 + Prom 31204 - 31263 6.3 32 17 Op 1 . + CDS 31439 - 32293 632 ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 33 17 Op 2 . + CDS 32361 - 32453 66 ## + Term 32520 - 32562 4.2 + Prom 32623 - 32682 6.9 34 18 Op 1 5/0.000 + CDS 32889 - 34832 1231 ## COG3711 Transcriptional antiterminator 35 18 Op 2 . + CDS 34834 - 35289 382 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 36 18 Op 3 . + CDS 35311 - 36666 1522 ## COG3775 Phosphotransferase system, galactitol-specific IIC component 37 18 Op 4 . + CDS 36686 - 36973 321 ## SDEG_0307 putative PTS system, galactitol-specific IIB component 38 18 Op 5 . + CDS 36974 - 37486 495 ## LSEI_2702 hypothetical protein 39 18 Op 6 . + CDS 37492 - 38160 607 ## COG0036 Pentose-5-phosphate-3-epimerase 40 18 Op 7 . + CDS 38171 - 38725 442 ## COG0794 Predicted sugar phosphate isomerase involved in capsule formation + Term 38794 - 38825 1.1 - Term 38769 - 38824 6.4 41 19 Tu 1 . - CDS 38872 - 39627 571 ## COG1349 Transcriptional regulators of sugar metabolism - Prom 39712 - 39771 8.8 + Prom 39676 - 39735 9.4 42 20 Op 1 1/0.300 + CDS 39845 - 40363 498 ## COG0698 Ribose 5-phosphate isomerase RpiB 43 20 Op 2 . + CDS 40396 - 41760 1158 ## COG3775 Phosphotransferase system, galactitol-specific IIC component 44 20 Op 3 . + CDS 41798 - 42088 342 ## SeHA_C3261 PTS system lactose/cellobiose-specific IIB subunit 45 20 Op 4 1/0.300 + CDS 42098 - 42553 508 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) + Term 42559 - 42594 5.0 46 21 Tu 1 1/0.300 + CDS 42631 - 43170 565 ## COG0794 Predicted sugar phosphate isomerase involved in capsule formation + Prom 43343 - 43402 7.4 47 22 Op 1 5/0.000 + CDS 43521 - 45578 1240 ## COG3711 Transcriptional antiterminator + Term 45617 - 45658 6.5 + Prom 45584 - 45643 5.0 48 22 Op 2 13/0.000 + CDS 45782 - 46249 501 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 49 22 Op 3 10/0.000 + CDS 46269 - 46565 370 ## COG3414 Phosphotransferase system, galactitol-specific IIB component + Prom 46585 - 46644 3.2 50 22 Op 4 . + CDS 46731 - 47981 1474 ## COG3775 Phosphotransferase system, galactitol-specific IIC component 51 22 Op 5 . + CDS 48018 - 48662 884 ## COG0036 Pentose-5-phosphate-3-epimerase 52 22 Op 6 . + CDS 48742 - 49494 223 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 53 22 Op 7 . + CDS 49511 - 50065 675 ## COG0794 Predicted sugar phosphate isomerase involved in capsule formation 54 22 Op 8 . + CDS 50080 - 50157 145 ## 55 22 Op 9 . + CDS 50120 - 50218 209 ## + Term 50239 - 50278 1.1 + Prom 50607 - 50666 2.5 56 23 Tu 1 . + CDS 50690 - 51004 205 ## lwe0796 phage integrase family protein + Term 51162 - 51218 15.2 + Prom 51072 - 51131 5.7 57 24 Tu 1 . + CDS 51286 - 51969 418 ## EF2648 hypothetical protein + Prom 51993 - 52052 6.2 58 25 Op 1 6/0.000 + CDS 52079 - 53371 1282 ## COG2610 H+/gluconate symporter and related permeases 59 25 Op 2 1/0.300 + CDS 53393 - 54541 1460 ## COG1929 Glycerate kinase + Term 54609 - 54670 14.4 + Prom 54550 - 54609 3.8 60 26 Tu 1 . + CDS 54683 - 55696 886 ## COG3835 Sugar diacid utilization regulator + Prom 55719 - 55778 8.4 61 27 Tu 1 . + CDS 55819 - 56706 1051 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase + Term 56711 - 56759 9.2 - Term 56699 - 56745 8.0 62 28 Tu 1 . - CDS 56751 - 58523 637 ## LC705_01992 hypothetical protein - Prom 58606 - 58665 14.5 + Prom 58509 - 58568 8.7 63 29 Tu 1 . + CDS 58696 - 59382 603 ## COG3597 Uncharacterized protein/domain associated with GTPases + Term 59561 - 59597 4.1 - Term 59591 - 59633 8.1 64 30 Op 1 16/0.000 - CDS 59666 - 61375 1947 ## COG4176 ABC-type proline/glycine betaine transport system, permease component 65 30 Op 2 1/0.300 - CDS 61368 - 62558 1569 ## COG4175 ABC-type proline/glycine betaine transport system, ATPase component - Prom 62698 - 62757 12.4 - Term 62709 - 62750 3.6 66 31 Op 1 . - CDS 62759 - 63391 621 ## COG2188 Transcriptional regulators 67 31 Op 2 . - CDS 63406 - 65352 1978 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains + Prom 65471 - 65530 6.3 68 32 Tu 1 . + CDS 65566 - 66216 859 ## COG2344 AT-rich DNA-binding protein + Term 66223 - 66271 11.1 - Term 66210 - 66258 9.2 69 33 Op 1 . - CDS 66259 - 66912 598 ## COG1266 Predicted metal-dependent membrane protease 70 33 Op 2 . - CDS 66931 - 67107 205 ## EF2636 hypothetical protein - Prom 67311 - 67370 6.7 + Prom 67255 - 67314 6.2 71 34 Op 1 41/0.000 + CDS 67340 - 67624 428 ## COG0234 Co-chaperonin GroES (HSP10) 72 34 Op 2 . + CDS 67682 - 69307 1605 ## PROTEIN SUPPORTED gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 + Term 69330 - 69365 5.3 + Prom 69520 - 69579 12.6 73 35 Op 1 . + CDS 69611 - 70330 758 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 74 35 Op 2 . + CDS 70354 - 71064 842 ## EF2629 hypothetical protein 75 35 Op 3 . + CDS 71081 - 72628 1068 ## COG1705 Muramidase (flagellum-specific) + Term 72673 - 72735 27.1 + Prom 72707 - 72766 6.8 76 36 Op 1 . + CDS 72846 - 73256 296 ## COG2246 Predicted membrane protein 77 36 Op 2 5/0.000 + CDS 73334 - 74818 1638 ## COG1488 Nicotinic acid phosphoribosyltransferase 78 36 Op 3 . + CDS 74821 - 75648 1142 ## COG0171 NAD synthase + Term 75652 - 75696 9.0 + Prom 75759 - 75818 4.7 79 37 Op 1 . + CDS 75841 - 77646 1994 ## COG2217 Cation transport ATPase + Prom 77657 - 77716 2.9 80 37 Op 2 5/0.000 + CDS 77738 - 78022 412 ## COG3592 Uncharacterized conserved protein 81 37 Op 3 . + CDS 78012 - 78287 374 ## COG2388 Predicted acetyltransferase + Term 78303 - 78351 12.7 + Prom 78346 - 78405 4.9 82 38 Tu 1 . + CDS 78455 - 78691 344 ## COG1314 Preprotein translocase subunit SecG + Term 78721 - 78770 12.4 + Prom 78756 - 78815 5.5 83 39 Op 1 4/0.100 + CDS 78846 - 79610 895 ## COG1647 Esterase/lipase 84 39 Op 2 10/0.000 + CDS 79610 - 81979 1621 ## PROTEIN SUPPORTED gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 85 39 Op 3 . + CDS 81992 - 82456 596 ## COG0691 tmRNA-binding protein 86 39 Op 4 . + CDS 82535 - 82636 72 ## + Prom 82639 - 82698 2.9 87 40 Op 1 40/0.000 + CDS 82759 - 83478 640 ## COG0356 F0F1-type ATP synthase, subunit a 88 40 Op 2 37/0.000 + CDS 83527 - 83748 415 ## COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K + Term 83759 - 83812 4.0 89 40 Op 3 38/0.000 + CDS 83886 - 84416 799 ## COG0711 F0F1-type ATP synthase, subunit b 90 40 Op 4 41/0.000 + CDS 84403 - 84945 714 ## COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) 91 40 Op 5 42/0.000 + CDS 84974 - 86530 2177 ## COG0056 F0F1-type ATP synthase, alpha subunit 92 40 Op 6 42/0.000 + CDS 86546 - 87454 1063 ## COG0224 F0F1-type ATP synthase, gamma subunit + Term 87463 - 87511 8.3 93 40 Op 7 42/0.000 + CDS 87528 - 88934 1877 ## COG0055 F0F1-type ATP synthase, beta subunit 94 40 Op 8 . + CDS 88951 - 89370 628 ## COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) + Term 89375 - 89403 -0.0 + Prom 89463 - 89522 6.1 95 41 Tu 1 . + CDS 89559 - 89795 161 ## EF2606 hypothetical protein + Prom 89797 - 89856 6.2 96 42 Op 1 . + CDS 89898 - 91199 1702 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase 97 42 Op 2 . + CDS 91213 - 91389 290 ## EF2604 hypothetical protein + Term 91403 - 91452 8.5 + Prom 91429 - 91488 9.5 98 43 Op 1 . + CDS 91517 - 91885 429 ## COG3731 Phosphotransferase system sorbitol-specific component IIA 99 43 Op 2 . + CDS 91890 - 93059 1448 ## COG0628 Predicted permease + Term 93065 - 93107 9.1 - Term 93052 - 93094 9.1 100 44 Tu 1 . - CDS 93121 - 93747 842 ## COG1182 Acyl carrier protein phosphodiesterase - Prom 93868 - 93927 9.2 + Prom 93825 - 93884 15.8 101 45 Op 1 7/0.000 + CDS 94049 - 94891 918 ## COG3711 Transcriptional antiterminator + Prom 94955 - 95014 1.9 102 45 Op 2 8/0.000 + CDS 95054 - 96934 2162 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 103 45 Op 3 . + CDS 96959 - 98404 1712 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase + Term 98478 - 98527 10.1 + Prom 98507 - 98566 5.4 104 46 Tu 1 . + CDS 98586 - 99155 637 ## COG0194 Guanylate kinase + Term 99160 - 99218 4.4 + Prom 99203 - 99262 9.3 105 47 Op 1 . + CDS 99303 - 99980 728 ## COG1309 Transcriptional regulator 106 47 Op 2 35/0.000 + CDS 100001 - 101728 185 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 107 47 Op 3 . + CDS 101725 - 103593 171 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 + Prom 103653 - 103712 7.7 108 48 Tu 1 . + CDS 103781 - 104626 961 ## COG2514 Predicted ring-cleavage extradiol dioxygenase + Term 104675 - 104721 2.3 + Prom 104665 - 104724 4.0 109 49 Op 1 . + CDS 104756 - 105799 930 ## COG1680 Beta-lactamase class C and other penicillin binding proteins 110 49 Op 2 . + CDS 105841 - 106812 1198 ## COG1482 Phosphomannose isomerase + Term 106818 - 106860 9.2 - Term 106806 - 106847 5.2 111 50 Op 1 . - CDS 106868 - 107413 409 ## EF2588 hypothetical protein 112 50 Op 2 . - CDS 107416 - 108390 803 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase - Prom 108534 - 108593 5.5 - Term 108576 - 108624 8.5 113 51 Op 1 10/0.000 - CDS 108627 - 109316 918 ## COG3442 Predicted glutamine amidotransferase 114 51 Op 2 . - CDS 109309 - 110661 1604 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase - Prom 110714 - 110773 11.5 - Term 110809 - 110855 8.0 115 52 Tu 1 . - CDS 110867 - 111505 626 ## COG2964 Uncharacterized protein conserved in bacteria - Prom 111647 - 111706 5.8 + Prom 111686 - 111745 10.7 116 53 Op 1 1/0.300 + CDS 111918 - 113252 1571 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 117 53 Op 2 1/0.300 + CDS 113283 - 116288 2975 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases 118 53 Op 3 . + CDS 116318 - 117691 1146 ## COG0044 Dihydroorotase and related cyclic amidohydrolases 119 53 Op 4 4/0.100 + CDS 117715 - 118908 1288 ## COG1171 Threonine dehydratase 120 53 Op 5 . + CDS 118914 - 120224 1578 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 121 53 Op 6 8/0.000 + CDS 120263 - 121456 1517 ## COG0078 Ornithine carbamoyltransferase + Prom 121618 - 121677 2.5 122 53 Op 7 . + CDS 121697 - 122641 1169 ## COG0549 Carbamate kinase 123 53 Op 8 . + CDS 122656 - 123036 456 ## COG0251 Putative translation initiation inhibitor, yjgF family + Term 123063 - 123109 -0.5 + Prom 123042 - 123101 6.5 124 54 Op 1 . + CDS 123130 - 124449 404 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 124464 - 124503 5.3 125 54 Op 2 . + CDS 124543 - 124902 312 ## COG2005 N-terminal domain of molybdenum-binding protein 126 54 Op 3 2/0.250 + CDS 124899 - 125906 850 ## COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family + Prom 125910 - 125969 7.6 127 55 Op 1 11/0.000 + CDS 126027 - 126740 551 ## COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs 128 55 Op 2 1/0.300 + CDS 126764 - 128599 1806 ## COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs 129 55 Op 3 . + CDS 128613 - 129194 762 ## COG2068 Uncharacterized MobA-related protein 130 55 Op 4 . + CDS 129208 - 130356 1153 ## COG0520 Selenocysteine lyase 131 55 Op 5 . + CDS 130372 - 130623 141 ## EF2567 selenide, water dikinase 132 55 Op 6 . + CDS 130572 - 131393 827 ## COG0709 Selenophosphate synthase 133 55 Op 7 . + CDS 131409 - 131996 757 ## EF2566 hypothetical protein 134 55 Op 8 . + CDS 132016 - 132273 176 ## EF2565 hypothetical protein 135 55 Op 9 . + CDS 132261 - 133016 504 ## EF2564 hypothetical protein 136 55 Op 10 . + CDS 132980 - 133810 855 ## COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family + Prom 133920 - 133979 10.4 137 56 Op 1 . + CDS 134052 - 134510 606 ## COG0716 Flavodoxins 138 56 Op 2 5/0.000 + CDS 134566 - 135405 926 ## COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases 139 56 Op 3 . + CDS 135398 - 136816 1541 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases 140 56 Op 4 . + CDS 136837 - 140370 3805 ## COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit + Term 140376 - 140413 5.5 - Term 140363 - 140401 1.1 141 57 Tu 1 . - CDS 140406 - 141821 1150 ## COG0168 Trk-type K+ transport systems, membrane components + Prom 142073 - 142132 7.3 142 58 Tu 1 . + CDS 142191 - 143708 2165 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Term 143721 - 143768 10.3 + Prom 143761 - 143820 4.8 143 59 Op 1 3/0.200 + CDS 143934 - 144518 520 ## COG1435 Thymidine kinase 144 59 Op 2 32/0.000 + CDS 144530 - 145603 1337 ## COG0216 Protein chain release factor A 145 59 Op 3 10/0.000 + CDS 145596 - 146429 240 ## PROTEIN SUPPORTED gi|169796031|ref|YP_001713824.1| putative adenine-specific methylase 146 59 Op 4 1/0.300 + CDS 146473 - 147495 1300 ## COG0009 Putative translation factor (SUA5) 147 59 Op 5 5/0.000 + CDS 147571 - 148809 1544 ## COG0112 Glycine/serine hydroxymethyltransferase + Term 148855 - 148906 6.3 + Prom 148856 - 148915 6.8 148 59 Op 6 . + CDS 148941 - 149570 890 ## COG0035 Uracil phosphoribosyltransferase + Term 149581 - 149624 7.1 + Prom 149596 - 149655 10.8 149 60 Tu 1 . + CDS 149676 - 149948 270 ## EF2548 hypothetical protein + Term 150097 - 150134 1.2 150 61 Tu 1 . - CDS 150022 - 150258 203 ## EF2547 hypothetical protein - Prom 150434 - 150493 74.3 + TRNA 150417 - 150489 75.8 # Thr CGT 0 0 - Term 150488 - 150533 15.3 151 62 Op 1 9/0.000 - CDS 150540 - 150866 320 ## COG4392 Predicted membrane protein 152 62 Op 2 . - CDS 150853 - 151560 797 ## COG1296 Predicted branched-chain amino acid permease (azaleucine resistance) 153 62 Op 3 . - CDS 151557 - 151658 144 ## - Prom 151764 - 151823 9.8 + Prom 151650 - 151709 8.7 154 63 Op 1 . + CDS 151774 - 152325 583 ## COG1396 Predicted transcriptional regulators + Prom 152346 - 152405 4.5 155 63 Op 2 . + CDS 152438 - 153769 1003 ## EF2507 hypothetical protein + Term 153792 - 153844 8.0 + Prom 153782 - 153841 11.5 156 64 Tu 1 . + CDS 153970 - 157648 3420 ## COG4932 Predicted outer membrane protein Predicted protein(s) >gi|284795498|gb|ADDQ01000051.1| GENE 1 55 - 768 541 237 aa, chain - ## HITS:1 COG:SPy0596 KEGG:ns NR:ns ## COG: SPy0596 COG1011 # Protein_GI_number: 15674680 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Streptococcus pyogenes M1 GAS # 4 237 5 238 300 273 55.0 2e-73 MRTIVFDVDDTLYDQQQPFRNAMSKIFPNVATEDMHELYLRFRHHSDETFPKVLANEWSL DFMRFFRMNETLKDLNYPGISQEEGKIFQQVYEEELDNITMHPEVTKLLDTLQEKEIPMG IITNGPTDHQFKKVKQLNLEKWVPSQNIIISQSTGFQKPEKEIFDLACNQFCMEPEHTLY VGDSYDNDIVGARNGGWHSLWFNHRSRELPSCQPASHLAEVTCFTELCPTVEKLFNL >gi|284795498|gb|ADDQ01000051.1| GENE 2 944 - 1030 84 28 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKYSDNEKFVKMILSQSYLNNTCSDRS >gi|284795498|gb|ADDQ01000051.1| GENE 3 1096 - 2811 246 571 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 347 560 36 255 329 99 32 9e-20 MLKRFFGYYRPYRRLFILDFGCAVFAGLLELAFPVAVNQVIDKIMPKGDFRLIALASAGL FAFYIINTFLQFIVVYFGHMLGVNIETDMREELYQHLQTQPFEYYDNQKTGKLMSRLTTD LFEISEVAHHGPEDVFITIMTLAGSFLLMLTIHVKLAIATFILLPFITIALGYFNKKMTK ANTDIYDNLGEFNAGIEASVSGIRVTQSFANEPFERKQFNYLNQMYRKSKLYFYKVMGVS SAYNYLLIRLINLFSLIFGAYYTIKGEITEGQFVGFILLANIFIRPIEKVNNMIESYPKG FAGFKRFTEETDKQPSIKDLPGAVAVSHLEGTIAYKDVSFAYEDGTKVLDHINLKIQPGE TVAFVGQSGSGKTTLCNLLPRFYEVSSGEITIDGRNIQQMTLASLRKQIGIVQQDVFLFP GTLRENIAYGNLNATEIDIQQAVKLAHLEHVIQLMPDGLDTIIGERGVKLSGGQKQRVAI ARMFLKNPPILILDEATSALDTETEQVIQESLNSLADGRTTLIIAHRLATIKHADRIIVV SDQGILEDGTHETLYAQRGHYRRLYDAQFRT >gi|284795498|gb|ADDQ01000051.1| GENE 4 2855 - 3865 941 336 aa, chain - ## HITS:1 COG:lin2301 KEGG:ns NR:ns ## COG: lin2301 COG0180 # Protein_GI_number: 16801365 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Listeria innocua # 2 336 3 331 331 466 70.0 1e-131 MKTIFSGIQPSGTPTIGNYIGAMKQFIELQNEYNCYFCIVDEHAITVPQEPQKLRQQIRS LAALYLAVGLDPQKATIFIQSEVSAHAEAGWIIQCNTSIGELERMTQFKDKSQKNGRAGV SAGLLTYPPLMVGDIVLYNADLVPVGDDQKQHLELTRDFVERFNKRYAQKNQEILTMPEV KIAEQGSRIMSLQEPTKKMSKSDTNVKGFISMLDEPAVIRKKIRSAVTDSTGVIEYNKEE KPGITNLLNIYSAATGQTVEELVQAYEGKGYGDFKADLAEAVVALLEPIQVRYQELLASE ELDMILDEGAENARQVANKTLQRMKNAVGLGRKVRR >gi|284795498|gb|ADDQ01000051.1| GENE 5 4225 - 4623 457 132 aa, chain + ## HITS:1 COG:lin2295 KEGG:ns NR:ns ## COG: lin2295 COG1393 # Protein_GI_number: 16801359 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Listeria innocua # 1 129 1 129 131 194 79.0 3e-50 MLTLYTSPSCTSCRKARAWLQEHEIPFKERNIFSEPLNIEELKAILIMTEDGTEEIISTR SKVFQKLNMDLDELPLQDLLELVQENPGLLRRPIMIDEKRLQVGFNEDEIRRFLPRDVRQ LELRQAQLMAGL >gi|284795498|gb|ADDQ01000051.1| GENE 6 4966 - 5628 918 220 aa, chain + ## HITS:1 COG:lin2294 KEGG:ns NR:ns ## COG: lin2294 COG4862 # Protein_GI_number: 16801358 # Func_class: O Posttranslational modification, protein turnover, chaperones; T Signal transduction mechanisms; N Cell motility # Function: Negative regulator of genetic competence, sporulation and motility # Organism: Listeria innocua # 1 218 1 217 217 91 30.0 1e-18 MEMEHINENTIRVLIGNEDLADRGITFLDLLGNHKDVENFFYSILEEVDVEDEFQGSEAV TFQVLPKNDGLELFISKNVAMDDLSSLEGLSEVNADVSELIRKQIEADKAAADELDEMEA TDETNRNVIFELDNFEAMIQLSKEVFMQSVLTNLYTYNDRYYLQVLFLTDELEKTNVDNE IAQILEFAHKTTVTQDTLVEYGTCIMERSALELTRYYFND >gi|284795498|gb|ADDQ01000051.1| GENE 7 5719 - 6897 689 392 aa, chain + ## HITS:1 COG:L168238 KEGG:ns NR:ns ## COG: L168238 COG4469 # Protein_GI_number: 15673710 # Func_class: R General function prediction only # Function: Competence protein # Organism: Lactococcus lactis # 1 288 1 282 329 155 37.0 2e-37 MLTALTVDNQELFSLIDCSIDELTQIRSEQAFVCPMCHQSVILKAGPIKIPHFAHRKKNS CWYEAEAETEEHLRLKQLFAEKCLREKLSFQVEAYLPALKQRPDLLIGKIAIEIQCSPLP IKRLVERTETYQAHGYQVVWILGERLVPKDKLTQLTKQFLYFSESLGFYLWTANKKQERI ELLCHIEESQCQQFYRRKQSWDFYEKQLLEIFRLPTANLNLLPDRRHTGQLMHDYYQKLT QQLGYRNAQLLRTQSFLYTKGCHLLQLPPWFYYPGLKLLPSSEEDIHLKMLVWEALKTEE ERLVTKQELWRILEAVFLEEGNFVWQPLPNIGLKKLFKIVGNNLLRWLQECYVLIKVNNK YLITSIFLREDPEKLIHWLKKVKKQHFFSHTC >gi|284795498|gb|ADDQ01000051.1| GENE 8 6945 - 8756 2325 603 aa, chain + ## HITS:1 COG:lin2292 KEGG:ns NR:ns ## COG: lin2292 COG1164 # Protein_GI_number: 16801356 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Listeria innocua # 1 601 1 601 601 667 57.0 0 MSEIKQLPTRDEVPTPLTWDLTKIFKDDAAFDAAYNQLTEELNQAESFKGTLGNGAEAFL AALEYVLDVYRKVETLYVYSHLKNDQDTTNTAYQALYARASSLYAQVSEAVSWFDPEVLT LSDEQIWGYFEEQPKLAVYRHYIQNILDERPHVLSMEQEALLAGASEIFGASSNTFSILN NADLEFPTVQNAEGETIQLSHGVYGQLMESVDPSVREAAFKGLYKVYKQFRNTLASTLGA HVKTHNYKAKIRNYDSARAASLASNHIPESVHETLVAVVNKHLPLLHRYVKLRKKLLNVE ELHMYDLYAPLLGEAPIRYSYEEAKEKAIEALKPLGEDYLSIVKEAFSSRWIDVIENQGK RSGAYSSGAYDTAPYILMNWHDSLDQLFTLVHEMGHSVHSYYTRNNQPYVYGDYSIFLAE IASTTNENILTEYLLQTETDPKVRAYVLNHYLDGFKGTIFRQTQFAEFEHFIHTEDAKGT PLTSEYLSEYYGELNAKYYGPEVVRDEEISYEWARIPHFYYNYYVYQYATGFSAASALSK HILAGEEGALEKYLNYLKAGSSDFPIEVMKKAGVDMTQAAYIEDAMKVFEERLTELEALV EKL >gi|284795498|gb|ADDQ01000051.1| GENE 9 8848 - 9507 670 219 aa, chain - ## HITS:1 COG:lin0963 KEGG:ns NR:ns ## COG: lin0963 COG2761 # Protein_GI_number: 16800032 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis # Organism: Listeria innocua # 2 165 17 181 272 75 32.0 5e-14 MVEIYLFVNPLGGVCLEIEKEIIQLSVNDKKKIQLRFIPLLNMKTINEFLSRQHIPINDI KRRNRIFEDLYSAALDYKAAQLQGRKKGRQLLIGLQKAVAEDGLAYSPELSEELLLAAGG DIDMYRKDRQSDFVKESFQTDQKVAREMGIKQHPTAVVYNYTCENDFGILVENFENMDEI KQLCRVHPHNEPLLNQGDATFEFKRRSNYHFPNGHLHLL >gi|284795498|gb|ADDQ01000051.1| GENE 10 9571 - 10149 740 192 aa, chain - ## HITS:1 COG:lin0964 KEGG:ns NR:ns ## COG: lin0964 COG4116 # Protein_GI_number: 16800033 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 185 1 184 194 134 41.0 1e-31 MSEHLEIEFKTLVSPQDFKRLIDHFAIQKTDFFTQTNHYFDTDDFQLKAQRMGLRIRVLA DRGELTLKVPAPEGLLEINDPLSLETANHFIKKNHLPTEGAVAKKLQELGIEIASIHLIG SLKTARAEKQIPQGLLALDESWYNQQHDFELELEVTEAESGKQAFQTLMADLNIPITLAP NKIQRMMRTTAP >gi|284795498|gb|ADDQ01000051.1| GENE 11 10346 - 11020 737 224 aa, chain + ## HITS:1 COG:lin0966 KEGG:ns NR:ns ## COG: lin0966 COG2357 # Protein_GI_number: 16800035 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 5 205 4 204 222 263 72.0 1e-70 MEREWELFLAPYEQAVSELKVKLRGIRKQFREQDKHIPIEFVTGRVKPVDSILTKTAIRH IPLNRIEEEMQDIAGLRIMCQFVEDIYQVVALLRNRKDLKIVEERDYIENKKESGYRSYH VVVEYPVQLVTGEKIILAEIQIRTLSMNFWATIEHSLNYKYQGVFPEEMKERLQRAAEAA YLLDEEMSSIREEIQEAQHYFSHGRGLLENEYYKQIKNETPENQ >gi|284795498|gb|ADDQ01000051.1| GENE 12 11033 - 11830 725 265 aa, chain + ## HITS:1 COG:L166614 KEGG:ns NR:ns ## COG: L166614 COG0061 # Protein_GI_number: 15672345 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar kinase # Organism: Lactococcus lactis # 2 264 6 268 270 268 52.0 9e-72 MKVAIVHNSEEKSKQVTKQLTTLLEQNQIQIDNRQPELVISVGGDGTLLSAFHRFNHLLN EVSFLGVHTGHLGFYTDWRDYELKELVESLCIHREKSTSYPLLDVRIRFRDGKPDKHFLA LNESTIKRGNRTMVGDVFIKDELFERFRGDGLSISTPTGSTAYNKSIGGAVLHPSINAFQ LTEIASLNNRVFRTLGSPIVIAHTEWLEIKLQESDDYFVTVDQLDIYQENIASVCYRIAD ERIHFASYRHMHFWHRVKDAFIGED >gi|284795498|gb|ADDQ01000051.1| GENE 13 11838 - 12731 261 297 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 39 285 41 279 285 105 30 2e-21 MEFQWTYDKETTQQVKYFLKEQGVSKGLLAKVKFQGGKIQVNGTVQNAIYPLQTGDVVKM TIPDEAEHETLLTDDEPIEIVFEDDHFLVVNKPAGIASIPAQYHPSGTMANRVKGYYKRQ NYVNQVIHVVTRLDRDTSGLMLFAKHGFAHALIDQELREKKVTKIYYALVGGAIEQLNEH QLIEKPIGRDLSSLLKRQVIETGQFASTEYWLAKRGAQAAAVRIQLHTGRTHQIRVHFEA IGCSLLGDEMYHGKMDQGIERQALHCIELIFTHPFTKETVHLISPLAEDMKSVDDTL >gi|284795498|gb|ADDQ01000051.1| GENE 14 12762 - 14123 1627 453 aa, chain + ## HITS:1 COG:SA0867 KEGG:ns NR:ns ## COG: SA0867 COG2239 # Protein_GI_number: 15926597 # Func_class: P Inorganic ion transport and metabolism # Function: Mg/Co/Ni transporter MgtE (contains CBS domain) # Organism: Staphylococcus aureus N315 # 2 453 6 461 461 408 47.0 1e-113 MNEGQEMEEQFALLLETLKNQQMNEFRELFLALHIYEQGQFYQSLDEKDRQHLYNYLSPK ELADMFDVIEEDNENMKDYLAEMRPSYAADMLAEMYTDNAVDLLNMLDKSQKAKYLSLLS SEEAGEIKELLHYEDETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ ENHLVGVISLRDLIVNDDDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYD DHLLGIVTVDDIIDVIDDEAASDYSGLAGVDVEEVSENPLKAASKRLPWLITLLFLGMST ASLISNYESLVSEASILAVFISLITGTAGNAGTQSLAVAVRRLAMKDEKDSNFGRLILSE VLTGLVTGAVTGLTIMIVVGVWQHNLPLGFVIGMAMLCAITVANLAGSLIPMLMDKLGFD PAVASGPFITTLSDLTSVLIYFNIASMFMRYFV >gi|284795498|gb|ADDQ01000051.1| GENE 15 14241 - 14870 789 209 aa, chain - ## HITS:1 COG:SP1260 KEGG:ns NR:ns ## COG: SP1260 COG3142 # Protein_GI_number: 15901120 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in copper resistance # Organism: Streptococcus pneumoniae TIGR4 # 1 209 1 209 210 225 53.0 4e-59 MIKEFCAENFTKIPQAIQKGANRIELCDNLAVGGTTPSTGVIEEVLAYAGEHSVPVMTII RPRGGNFVYNDIELKIMHTDLIEAKKLGTDGIVIGCLTEDGWLDEEALDLFIETAEGLQI TFHMAFDALSKENQFKAIDWLAERGVTRILTHGGPAGTPIEDNFDHLKELIAYADQRILI LPGGGISTENVQTVMDTLKVTEVHGTKIV >gi|284795498|gb|ADDQ01000051.1| GENE 16 15000 - 15845 680 281 aa, chain + ## HITS:1 COG:L55507 KEGG:ns NR:ns ## COG: L55507 COG0500 # Protein_GI_number: 15673975 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Lactococcus lactis # 1 280 1 273 273 230 45.0 2e-60 MLKKIERAQQLLKKEAAVFRCPTCHEPMHVEGVGLICQQRHQFDLSKKGTLYFLNHGVQT EYNKKMFTSRGKMIQSGMYAPVLNKIMHYLPQNKTVVDVGCGEGSFLAELSQAGLSGLKI GFDLSKEGIYLASNQPIDAFWCVADLTNLPFANEGFDTILNIFSPSHYQEFQRVLKADGT VIKIIPEENYLKELRAAFYPNDEKKQIYSNQKVVQRFAEELAVEVDERITYCFDIPEERR LDLLEMSPLEWQVSQEVKAELQQRPLEKITIDVRLLVGRKR >gi|284795498|gb|ADDQ01000051.1| GENE 17 16157 - 16663 597 168 aa, chain + ## HITS:1 COG:SP0486 KEGG:ns NR:ns ## COG: SP0486 COG0219 # Protein_GI_number: 15900400 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase (SpoU class) # Organism: Streptococcus pneumoniae TIGR4 # 1 167 1 166 167 237 67.0 6e-63 MTNHIVLFEPQIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITY HKDLAAFLAHVAGKHLHLVTKFAHQTYSEVNYNDGEDHYFLFGKETTGLPETFMRENEEK CIRIPMNDEHVRSLNLSNTAALIVYEALRQQNFPNLELTHHYENDKLD >gi|284795498|gb|ADDQ01000051.1| GENE 18 16880 - 17524 719 214 aa, chain + ## HITS:1 COG:SP0984 KEGG:ns NR:ns ## COG: SP0984 COG0406 # Protein_GI_number: 15900859 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 207 1 204 206 160 42.0 2e-39 MKLYFTRHGKTEWNQQKRFQGMTGDSPLLPTSYDEIKQLGQYLQDIPFEKIYSSPLLRAK NTARGIQQELNHPVEIVYTDTLKELGLGRLEGQYIEEMRNFYGEELDHLRHRLDLYDPTI FDGEPIEQAIQRISETVAEAAKQHEGPVLFVGHGAALTAAIQAMAGKPLSELRTMGGLLN NSLSILETKEASRNMPYDLTLWNDTSFLAKEKAQ >gi|284795498|gb|ADDQ01000051.1| GENE 19 17551 - 20160 2846 869 aa, chain + ## HITS:1 COG:L180415 KEGG:ns NR:ns ## COG: L180415 COG0507 # Protein_GI_number: 15673722 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Lactococcus lactis # 10 860 3 824 834 727 48.0 0 MVTLFGEDEEKAFIVGTVQAIFFENPSNFYKVVLVNVTDTNTDYLEKEIVVTGSFGQVQE EEPYRFFGHFVDHPRYGRQFQVDSYQQERPTSASGVVNYLSSDKFPGIGKRTAEKIVEVL GESAIDRIIDDPSVLEEVTVLNEKKRQVIVETIRLNHGMEQVIVGLNRYGFGSQLAFSIY QTYQEETLSVIQENPYQLVEDIEGVGFKRADNIAEQIGIQADSAVRIRAAILHEVFEHSI RSGNTYVQADVLLEEAIRTLEASRPVEISPDQVANEIITLVEHGKIQQEETKLFENSLYF SEWGIGTSIQRLLSRKKEIHYEEEEVQKNIRMIEKRLNIQYGDSQQAAIEEAIKSPLFIL TGGPGTGKTTVINGIVSLFAELNGLSLDLKDYTQEMFPILLAAPTGRAAKRMNETTGLPA STIHRLLGLTGREKNPSLTAKELEGGLLIVDEMSMVDTWLANTLLKAIPTNMQVIFVGDK DQLPSVGPGQVLHDLLQINEIPKCELNEIYRQGDGSSIIPLAHEIKEGKLPTDFQKNQKD RSFFASDIGHIEEYIRQIVTKAKAKGFTPQDIQVLAPMYRGAAGIDALNKMMQEIFNPNE GKKKEVKWNDTVYRIGDKVLQLVNTPELNVFNGDMGEIVGITLAKDSEDKVDELVLQFDN NEVTYKRNEWNKITLSYCCSIHKAQGSEFRMVLLPMVHQYSRMLQRNLLYTAVTRSKELL ILLGEVSAFETCVKNESASRMTMLKERIVNAEQMTLTTRTQLEAYEEGLTADHPFTEKET KAVSYETEQQSTKADQIKETDEQLVETTVQEVSLFADEEEESTPETAKKATKVVEEPLPK EPRLTVEIIQTNAVDPMIGMKDTTPYQFL >gi|284795498|gb|ADDQ01000051.1| GENE 20 20227 - 21186 837 319 aa, chain - ## HITS:1 COG:L39484 KEGG:ns NR:ns ## COG: L39484 COG1597 # Protein_GI_number: 15673780 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Lactococcus lactis # 5 319 3 302 302 164 35.0 1e-40 MNIHYYLIINEQASSGNGRKVARKVIQQLKQQELKYTALYTDYAGHEKELTKELAETTLL PWSEDLDVSTFPILVVLGGDGTLHNVINSLLPYDSAIPLSYIPCGSGNDFARGVGLSRNI DKALHQILRTRRPKEIQTIHYVEANQEEIGLATNNVGLGLDAAIVEKTNESSSKKALNKF KLGSLSYISSIIHVFFKQKGFPILVEMNGKQYTFNRAFLCTVTNHPYFGGGVSIMPTANP RKAVVDLVVVERINIFKILWLIFLLLRQKQGKSKHFHHFQSSKIRIVSTIPQTIHADGEI LGKRSIDMVYTTQKRLFWF >gi|284795498|gb|ADDQ01000051.1| GENE 21 21449 - 21955 505 168 aa, chain + ## HITS:1 COG:lin0860 KEGG:ns NR:ns ## COG: lin0860 COG4708 # Protein_GI_number: 16799934 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 10 168 2 161 162 100 41.0 1e-21 MQNSFQANRKLRTVLANGIIMGLYIVLSLLVRPVSSGMIQFRISESLNHLVVFNRKLMWG VLGGVIFFNLFFGFGVMDALFGGAQTLFALSLTAFLQKKVPSIPVRMCLNSLFFTVSMFF IAFMLVPSGGQAFWTTYGWLALSEAIIMTISAPIMYFINKSLKFETRI >gi|284795498|gb|ADDQ01000051.1| GENE 22 22193 - 23398 1347 401 aa, chain + ## HITS:1 COG:SPy1205 KEGG:ns NR:ns ## COG: SPy1205 COG2348 # Protein_GI_number: 15675170 # Func_class: V Defense mechanisms # Function: Uncharacterized protein involved in methicillin resistance # Organism: Streptococcus pyogenes M1 GAS # 5 401 9 404 407 325 44.0 7e-89 MYTFKIGIPAEVHDTFVKNHPLCNLLQSSSWAKVKDNWGSEIVGVYEKDTLVASSLVLIK PLPAGFTMLYTPRGPVMDYTNERLVSYFMAELKKFGKKKRALFIKMDPAVHYQDFHLGEE HQPHAEATSIIETLKEAGAKYQGLTMDMGATIQPRFQANIYREDFSEEQLSKSTKKMIKT AEKKGVVVQQGHVDFVDEFEKVIQSTMERQHISLRNSDYFKKLLNIYPEDSFIMLAQVNL KERLDSTRQRYDKNQKDLSNLKENQVKKRHNLEELDASLTRELKELEENIAEAGEIVTVA GALAVTFGPTSEILYAGLDDRYKRYMPTYVTWRDAIQECFNRGCESCNMGGLEGSLNDGL IKFKANFNPTINEFIGEFDLPVNKLLFKASEYAYKLRKQKK >gi|284795498|gb|ADDQ01000051.1| GENE 23 23454 - 24089 681 211 aa, chain - ## HITS:1 COG:CAC0331 KEGG:ns NR:ns ## COG: CAC0331 COG4684 # Protein_GI_number: 15893623 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Clostridium acetobutylicum # 1 205 6 192 192 89 33.0 6e-18 MNNTKKFTLTAMFLAILLLLALTPLGFITLGPLNSTTMHIPVIIGSIVLGPKIGSMLGGT FGIISLIKNTTAPTPLSFVFSPFIPVIGTDHGSWKALLIVLIPRILIGVVPYFAYKWLNK LTKEKAQPVSLFVAGVLGSATNTILVMNMIYFLFNSAYAEIIGKAGTAVYLAIIATIFSS GVPEALVAGVAASAIASVLLRLMKRNATQKL >gi|284795498|gb|ADDQ01000051.1| GENE 24 24093 - 24647 563 184 aa, chain - ## HITS:1 COG:SPy1222 KEGG:ns NR:ns ## COG: SPy1222 COG0452 # Protein_GI_number: 15675186 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Streptococcus pyogenes M1 GAS # 2 177 3 178 181 211 66.0 7e-55 MKTILLGVSGSISAYKAADITSQLTKLGYNVEILMTKSSTAFITPLTLQSLSKNPVHTDV MMEIDPSKINHIELAKKADLFLVAPASANTIGKLAHGIADDLLSTVALALYPETPKIIAP AMNTYMYQNPIVQRNIGILKEVGYQEIIPREALLACGDYGRGALATVEDILQTVMKILSS DNKE >gi|284795498|gb|ADDQ01000051.1| GENE 25 24644 - 25417 861 257 aa, chain - ## HITS:1 COG:SPy1221 KEGG:ns NR:ns ## COG: SPy1221 COG0452 # Protein_GI_number: 15675185 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Streptococcus pyogenes M1 GAS # 1 251 1 226 228 153 39.0 3e-37 MDVLVTAGGTSEPIDNVRSITNHSSGGLGKAIAESFLAAGHTVTYVTTKHALRPTQQLDL SIKEIETTVELATTLEQLFAEKQFDAIVHAMAVSDFTTETAQTEEQFIDSFAQQLSEQTL PKTKEALVTIVQNTLNQIADIPQTATKISSDTDRLLIFLKKNPKVIQMIRDKQPQTVLVG FKLLVDVSQEELVQVAQAALVKNRCDFVLANDLMNVHETEHEGLLINETGIVQEACSKQG IGSMIVKNVEKKWREQQ >gi|284795498|gb|ADDQ01000051.1| GENE 26 25433 - 26425 1341 330 aa, chain - ## HITS:1 COG:SAP008 KEGG:ns NR:ns ## COG: SAP008 COG0604 # Protein_GI_number: 16119208 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Staphylococcus aureus N315 # 4 329 2 323 323 313 46.0 2e-85 MNSFQAFTLREQDTSVIGQLETITLDDLSEGTVVIKAAYSSVNFKDSLASKKDGGVIRNY PMIPGIDVSGTVVTSEDPRFKEGDKVIVTGYQLGVSHTGGYSEYVRVPGDWVVPLPEKMS LKEAMIFGTAGFTAGLSVTALEDDGLRDDKEAPIIVTGATGGVATLSIAMLHQLGYTSIT ALTRKPDSFELLKELGVSECLLVEDFLATPVKALMKQRFAFAIDTTGGEITAAVLPQLRY DGRSAICGRAAGITLETTVLPFILRGVHLLGIDSVNVGMDKRKIVWQRLATDLDITEKAV YQEITLEELPPVFEALQAGQHIGRTIVRIS >gi|284795498|gb|ADDQ01000051.1| GENE 27 26689 - 27231 663 180 aa, chain + ## HITS:1 COG:lin0796 KEGG:ns NR:ns ## COG: lin0796 COG1396 # Protein_GI_number: 16799870 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 1 180 1 180 180 205 58.0 3e-53 MEIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEQ FFSQQPLEQKIVYNEEESTLYYDEEHGYELKWLIPASNEKEMEPVIITFDKNGEYKTFEP SLSETFIYVIDGSIRLTLGEATYIAKKGQTMYYQATEPHQISNNGRGKSRALIVATESYL >gi|284795498|gb|ADDQ01000051.1| GENE 28 27257 - 28342 1218 361 aa, chain + ## HITS:1 COG:lin0797 KEGG:ns NR:ns ## COG: lin0797 COG3842 # Protein_GI_number: 16799871 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Listeria innocua # 1 361 1 362 364 536 75.0 1e-152 MRNHVISFENVVKQFDDEPVLKNVSFEIEEGKFYTLLGPSGCGKTTILRIIAGFNDVTSG DVYFDGKRINDVPANKRQVNTVFQDYALFPHMNVFDNVAFGLKIKKLSKAEIEKKVKEAL RLVQLPGYETREISEMSGGQRQRVAIARAIVNEPKVLLLDEPLSALDLKLRTAMQYELRD LQQRLGITFIFVTHDQEEALAMSDEIFVMNKGHIVQSGTPVDIYDEPINHFVADFVGESN IVDGVMLEDNLVSFVGKKFECVDGGMRKNEPVEVVLRPEDLTITTLEKGKLTVTVDTQLF RGVHYEIICFDEQGNEWMVHSTRKAKEGAQVGLSFEPEDIHVMRFNESEEDFDARLESYD E >gi|284795498|gb|ADDQ01000051.1| GENE 29 28361 - 29167 889 268 aa, chain + ## HITS:1 COG:lin0798 KEGG:ns NR:ns ## COG: lin0798 COG1176 # Protein_GI_number: 16799872 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Listeria innocua # 2 264 3 264 269 347 73.0 1e-95 MKTMRRIYSIPYVMWLLLFVIAPVLMIIYQSFFDMNGQFTLANYQTYFTSGTYLSMTINS VWYAFLITIFTLLVSYPTAYFLTKLKHKQLWLMLVILPTWVNLLLKAYAFIGIFSIHGSI NQFMSFMGLGTHQILFTDFSFLFVATYIEIPFMIMPIFNALEEMNPSLISASRDLGASSA ETFRRVIFPLSLNGVKSGVQAVFIPSLSLFMLTRLIGGNRVITLGTAIEEHFLVTQNWGM GSTIGVILIVAMFIVMLLTGEKKKGRGK >gi|284795498|gb|ADDQ01000051.1| GENE 30 29167 - 30003 838 278 aa, chain + ## HITS:1 COG:lin0799 KEGG:ns NR:ns ## COG: lin0799 COG1177 # Protein_GI_number: 16799873 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Listeria innocua # 4 265 2 262 268 315 68.0 9e-86 MQKKKFKWSYVYLFVVFALLYAPIFYLIFYSFNDTQTMNQFTGFTLDNYRNVFEDTRLLT IVLNTFLLAFLSALIATIIGTFGAMGIYYTKRRKNRNTLLSFNNILLVSPDVIIGASFLI FFTAVGFISLGFTSVLLSHIAFSIPIVVLMVLPKLQEMNDSMVDAARDLGANNVQVIKNI ILPFLAPGIIAGYFMAFTYSLDDFAVTFFVTGNGFSTLSVEIYSRARQGISLEINALSAL VFLFSMILVVGYYFISKDNTPKRLKKMRREQSEVAKLK >gi|284795498|gb|ADDQ01000051.1| GENE 31 30000 - 31073 1195 357 aa, chain + ## HITS:1 COG:SP1386 KEGG:ns NR:ns ## COG: SP1386 COG0687 # Protein_GI_number: 15901240 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Streptococcus pneumoniae TIGR4 # 1 357 1 356 356 466 64.0 1e-131 MKKLQSLFIGIIAIIVILFFGVRQLEKASGMAGADTLTIYNWGDYIDPALIKKFEKETGY KVNYETFDSNEAMYTKIQQGGTAYDIAIPSEYMIQKMMKAKMLLPLDHSKLKGLENIDAR FLDQSFDPKNKFSVPYFWGTLGIIYNDKFIDGRQIQHWDDLWRPELKNNVMLIDGAREVL GLSLNSLGYSLNSKNDQQLRQATDKLNRLTNNVKAIVADEIKMYMANEESAVAVTFSGEA AEMLENNEHLHYVIPSEGSNLWFDNIVMPKTAKNKDGAYAFMNFMLRPENAAQNAEYIGY STPNKEAKKLLPKEVAEDKQFYPDDETIKHLEVYQDLGQEYLGIYNDLFLEFKMYRK >gi|284795498|gb|ADDQ01000051.1| GENE 32 31439 - 32293 632 284 aa, chain + ## HITS:1 COG:BS_yddH_1 KEGG:ns NR:ns ## COG: BS_yddH_1 COG0741 # Protein_GI_number: 16077564 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Bacillus subtilis # 42 187 55 192 205 74 36.0 2e-13 MKLSKYLALCLFGIFFIFILLLIWGESSSTNVTGTEEEQNLPEAVLRWKEKVTKEAVKNE IPEAVPYPLGIIMAESGGNYEKYPDIMQCSESQGRPLNSITDPDESIEVGVKYFADMWKG HQGYEVLNIVQVYDFGGGFLSHSGTGGNSEIAKIASDELADGIHEGGEKYWRWYGFNSRV EWCATFVSYVAEKANLKMERFAYCPTGINNFKTNNQWQGGGVEPKSGAIIFFDWDGDGVS DHVGIVEKFENNTVHTIEGNSGDIIARRSYEKNSSYSLGYGILN >gi|284795498|gb|ADDQ01000051.1| GENE 33 32361 - 32453 66 30 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNVLDEIKLKTRFSKEKYHFNRFYGLADFA >gi|284795498|gb|ADDQ01000051.1| GENE 34 32889 - 34832 1231 647 aa, chain + ## HITS:1 COG:BH3853 KEGG:ns NR:ns ## COG: BH3853 COG3711 # Protein_GI_number: 15616415 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus halodurans # 1 479 3 494 700 132 23.0 2e-30 MNERQIKLARLLIEHDKFLPASFYSKKLSVSTKTVFQDLETLRLFIQPYSVEIERLPSLG IHLSGEHSAKSNFLKELESELSQDQLSPVNRRVKIIQSVFFEEDNPTLESLAEQYLVSKT SLYNDLKIINEIIVSNGIEIISNNDGLTSQGAENEIQLAIKQLVTHFSNLIEEKSVNAKL YHFFEKQLVDIVSKILHKNFRELTENVSDYYMESLLTTLLVQCRRIQMGYHVEGEDDYLF SSIRYMETFVVANDMSERLSQETVLNFSEADKDYLSRQLFAHRVTTEVKASDEKYVDLVY RLISRMSKIEKIDLTQDEHLFNSLLYHIPAMILRLKRGIHIENPLLENIRDQYSELFSIV WYALVIVEQQYNVILNDDEISFILIHFQIALDRQSKASNIVIICQYGMSSAQFIYSKVRK FIPAHDNVEISTLERFNKSDKENIDLIISSIDIPQSKTPFVKVTPLVSNQDYIKIMEAYT KYLIQGAPFGLSDSLDRNFEVDVLSKYVNLKLISLQNLFSDKADCLNSMIDELEKRKLVL PTFRKSVFEREDIGNTNLESGVALPHADPTTILKSHIYIVSLKKSINWGDRTVKLIIMVN LSEEDLQEIREVVEELYQFIDEKKKVDALVKVNDSVQMLQIFSTGGN >gi|284795498|gb|ADDQ01000051.1| GENE 35 34834 - 35289 382 151 aa, chain + ## HITS:1 COG:lin2202 KEGG:ns NR:ns ## COG: lin2202 COG1762 # Protein_GI_number: 16801267 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Listeria innocua # 2 143 6 150 155 85 33.0 3e-17 MFFDQELCLFHIKPDDQTQLFEKMYEKLYLSGCVKSSFLDGITTREAEYPTGLEFNGIGF AIPHTDSVNVNKSQICFASLDEPVIFQDMTDKSHNIEVNLVFMLAMAVPHEQVETLQNLM ALFTDDEKVKRLRELSSKEDFIKLLNDSGVY >gi|284795498|gb|ADDQ01000051.1| GENE 36 35311 - 36666 1522 451 aa, chain + ## HITS:1 COG:SA0238 KEGG:ns NR:ns ## COG: SA0238 COG3775 # Protein_GI_number: 15925950 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIC component # Organism: Staphylococcus aureus N315 # 1 388 1 387 419 290 41.0 5e-78 MDVIMDGIQWFIGLGSTVFLPVIIFIIGLFFGLKPSKAFISGVTVGIGNIGLGLVLDLLS GGLGSAIQQMGEKFGTSLNVLDIGVGVGGPLAFSTSLGILMIPISLILNFILVMLGWTKT LNVDIWNFWFPIFLGMLVQTVTGNFWFGIIGAIVAVLLQWFLADAAQKEVSEFFGYPGIA ITHMMALSGVLFAKPMNWIFDRIPGFNKIDADAESLTKKFGIFGDTVVIGLLIGIVVGIL AGYDAAGVGLLGMQTAAVMKVMPKMVAMFMEGLLPIAEAAKEFTDKKLNGRVVNIGMDAA LTVGHPTVMSTSLLLVPISLLLAVILPGNQVLPFGDLAFFTFAICLMIPYFKGNIVRSLV GCSLYLVMTFYLSTWLAPIVTELFQMANFDVGTSGLVTMLLSGLWPAGLVVLLAQKLGIF GIILLGIVILAGMFYFNKIKGKKVENIQEVQ >gi|284795498|gb|ADDQ01000051.1| GENE 37 36686 - 36973 321 95 aa, chain + ## HITS:1 COG:no KEGG:SDEG_0307 NR:ns ## KEGG: SDEG_0307 # Name: not_defined # Def: putative PTS system, galactitol-specific IIB component # Organism: S.dysgalactiae # Pathway: Galactose metabolism [PATH:sds00052]; Phosphotransferase system (PTS) [PATH:sds02060] # 1 93 1 93 94 111 60.0 7e-24 MKKLLVICGAGHATSTIAVSKINKWLEAENYTDQVKIYQSKIADELNKMDDYDAVVSTTI VPDSVKDKVINGLGLLTGIGADKIFEDVKTRLELK >gi|284795498|gb|ADDQ01000051.1| GENE 38 36974 - 37486 495 170 aa, chain + ## HITS:1 COG:no KEGG:LSEI_2702 NR:ns ## KEGG: LSEI_2702 # Name: not_defined # Def: hypothetical protein # Organism: L.casei # Pathway: not_defined # 2 170 3 172 173 138 38.0 7e-32 MIKHDTIKLHTIEGRASYHDLREDLVRIALDSGLADGVMIITTPHTTCSFFYEETMHDVN YFGDDFLHVDINETMEKIAPVMTTEGQYHSPGPEHIAFGTSLSDPNYPAEKWVMLNTDAH LKASIYGTNSQSLILKDGELQIGSLGRVYFVDWDRLRERDRTINVIIMGE >gi|284795498|gb|ADDQ01000051.1| GENE 39 37492 - 38160 607 222 aa, chain + ## HITS:1 COG:lin1932 KEGG:ns NR:ns ## COG: lin1932 COG0036 # Protein_GI_number: 16800998 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Listeria innocua # 6 221 4 218 218 177 39.0 1e-44 MKEYILAPSLFSSKISRLEKTLETLEIEEIKWLHVDVMDGYFVPDMASGPSIVKELKEIT DILLDVHLMVETPEKIVPAFLEAGADSITYHAEATNNGMHIIQMVKEQKKKIGVAINPAT PVSLIAPILAEVDLVLVMTINPGRPNRDFIPLTVNKIAELSQLRESNDYHYLIEVDGKID NETIKLCANAGTDMFVSGGYIFGEENKEVEMITNLKTALAEV >gi|284795498|gb|ADDQ01000051.1| GENE 40 38171 - 38725 442 184 aa, chain + ## HITS:1 COG:BS_yckF KEGG:ns NR:ns ## COG: BS_yckF COG0794 # Protein_GI_number: 16077414 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted sugar phosphate isomerase involved in capsule formation # Organism: Bacillus subtilis # 4 184 6 185 185 132 44.0 4e-31 MENYVLKILNELTQNAEKIEMEQILIFLEEIKKAKHIFLSGAGRSGIAIQAFANRLMHLG FKVSLVGEISSPHSQPGDLLIICSGSGETESLKSLAKKAVESDVKIGLITMKGDSTIGKL ASSIIVLPGTTKNENEHHSKEFKQPMGSAFEQLAFLTFDSIILNLMDEMEETSEKMFNRH ADFE >gi|284795498|gb|ADDQ01000051.1| GENE 41 38872 - 39627 571 251 aa, chain - ## HITS:1 COG:BH0801 KEGG:ns NR:ns ## COG: BH0801 COG1349 # Protein_GI_number: 15613364 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Bacillus halodurans # 4 231 10 238 259 125 29.0 8e-29 MLLMAERRDLILQELIKEGSVYVSELAKKYSVTYETIRKDLTYLENKGLLMKSHGGATLK QNAIEHSFQVREKENAHYKKLVAQKALELIPDNSSIVIGTGSTTLELAILLSMKSGYKIF TDSLPVASLLISSKNQVFLFGGELREPSSSVFGGWTISQINQIQVDLCFLGTDGFSNVDG PTSPSSSDVFVDQAIISHAEKRYILGDYTKFDRKSLYKICDWSEITALITNKEADLEKIR KIETMTHVITC >gi|284795498|gb|ADDQ01000051.1| GENE 42 39845 - 40363 498 172 aa, chain + ## HITS:1 COG:YPO3353 KEGG:ns NR:ns ## COG: YPO3353 COG0698 # Protein_GI_number: 16123503 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Yersinia pestis # 5 134 4 131 151 94 43.0 1e-19 MKTKIAIACDDLGFETKEAIKKYLIEEKNADVVYDPVQVPEDGVNTFAKLADEMSVLIQK DVCRLGIYICGTGIGFSCQANKHWGIRATAVTNPYSAKRARLSNNVQIIGLGLRVNGLEY MKQIIDAWYDEPFEFSTARENSKNNLLEAEKNDNLLLKKPDHVAWNMGFRPD >gi|284795498|gb|ADDQ01000051.1| GENE 43 40396 - 41760 1158 454 aa, chain + ## HITS:1 COG:STM3260 KEGG:ns NR:ns ## COG: STM3260 COG3775 # Protein_GI_number: 16766558 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIC component # Organism: Salmonella typhimurium LT2 # 4 448 5 441 457 243 34.0 7e-64 MEFITQFINDLGNFIFIPLIFLVFMVALGRPLAEAIQSAMKVGIGFIALSMVIGFMLEKM EPAITGLAGKTGSSLDAIDVGGAATAVMGFGSSMGAIIIPLCVGINLLLLVLKITDCVNV DVFNLHQNASMGAIVAVYSGNFLYGVLTAGLFHVWALIAADLGAKNNEKFFGLPQGVSIS HPVANTYLLFAYPFNWIFDRIPGFRKLNVTAETIQKRFGVLGDPTIVGFLLGTLLGLFGY DWTSPYQTIISSVQLGMYLAAVMLLLPKMTSIMMEGLVPLSNAARKKLVKRFPDRDITVG MDTALIVGNPSVISSALLLIPAMVILAVILPGNRVMPLGDLSQFVFFIACMVPVFKGNII RTWLSSVILFGGGLYIASWMTPATNELFQKFGAGAQKNVMYSSLNPSANPFTGLFAAASH IGLIGFILIGAILISVGYLLKKKERSQLQNDATV >gi|284795498|gb|ADDQ01000051.1| GENE 44 41798 - 42088 342 96 aa, chain + ## HITS:1 COG:no KEGG:SeHA_C3261 NR:ns ## KEGG: SeHA_C3261 # Name: not_defined # Def: PTS system lactose/cellobiose-specific IIB subunit # Organism: S.enterica_Heidelberg # Pathway: Galactose metabolism [PATH:seh00052]; Phosphotransferase system (PTS) [PATH:seh02060] # 3 96 2 94 94 127 78.0 1e-28 MNKKILVVCGNGIASSSIMVSVLEDYLKEQGISGVDVQKSSLMDCNADKYNSYDLVVSST KIDNPDVTTKVIVGAGLLTGIGEDEIFDAVKEEITK >gi|284795498|gb|ADDQ01000051.1| GENE 45 42098 - 42553 508 151 aa, chain + ## HITS:1 COG:BH0192 KEGG:ns NR:ns ## COG: BH0192 COG1762 # Protein_GI_number: 15612755 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Bacillus halodurans # 16 140 19 142 160 74 34.0 7e-14 MAIDVIVSNGQDTITTYQEAIRTAGEKLVEKGNIDAKYIDACIEREIDFPTGLLLANGDG IAIPHGNSDLVNKDSISVVRIKNTVEFGRMEDKDLKVGCSLVFNLALASGNQHIGILRKL IGLFQDEEFVDTCKNEETDTVQKYLLTKLAE >gi|284795498|gb|ADDQ01000051.1| GENE 46 42631 - 43170 565 179 aa, chain + ## HITS:1 COG:BS_yckF KEGG:ns NR:ns ## COG: BS_yckF COG0794 # Protein_GI_number: 16077414 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted sugar phosphate isomerase involved in capsule formation # Organism: Bacillus subtilis # 2 179 5 185 185 147 44.0 9e-36 MKFFNEIIDEVLTIGNEISDQQVDRMIKAIQGANHIFLAGAGRSGLMIRAFANRLLHLGY SVSLVGEISSPHTKSGDLFLIGSGSGETTSLVNQAKVAKDNGVVIGLFTTNSSSTLGEIA DQVVIIPTQSKQSKDEALQPMGSLFEQTSLFLYDSIILNLMEKTGETNQTMKTRHADLE >gi|284795498|gb|ADDQ01000051.1| GENE 47 43521 - 45578 1240 685 aa, chain + ## HITS:1 COG:lin2817_1 KEGG:ns NR:ns ## COG: lin2817_1 COG3711 # Protein_GI_number: 16801878 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Listeria innocua # 1 526 3 528 536 303 33.0 1e-81 MSARDQEILRQLIKHRSLKEAELLNELELSSRQLAYSIEAINEKLSEKRLPLIERRNGYY YAKNESADYLTIHQSVQDIIFSKEDRVHLLLIMILTRVEELSLDHFCIELQISKNTALAD IKKAKTLLLKYHLEIEFSRKKGYVIVGEEWDKRIALFHSIIEIYKNYGDNVTVQLLESSQ KYLDSVKNDVLKIEKFLGVKYTDEDFYPLLYFISSIFVRIERGQMIDSSRIQEREEIEHT KEYQSLSYITTDFPDLPEDEKVFISLQLLSSNVRNKGMVAKKDLPLLANSLWEFLTEFEV NTLLVLSDKKDLLIKLLNHFKPAYYRIKYDLSTGNVLYDKIRSEYNVLHNFVCQSISPLE RFFQTEISDEEIAYITLFVGGHLISNDHNDLEEKIIKAVILCPNGISMSKLIEQKLKEIF PEFLFYPTNSIREYKKFMLPHDIVFSTVPVKSEKKVYVMNEILTNSDQLKLRQDVIKDIF HLDFDSIRATDIISVLKQYVSLDEKLETKLKEDLDSLLLSEQKSNTITENSSKGDLLQMI KNENIVLVEERLSWKSILNQSSQALVNQKIISSDYNELLLQEYLDQPSYIMLRQRILLPH LDPAIVDQKLGVFITVLKQGITYHGKKIHVVALLTTPDKTSHLPILYHINRMANDAEFIE ELVKLEDVNEISKAIRNFSTNDKNS >gi|284795498|gb|ADDQ01000051.1| GENE 48 45782 - 46249 501 155 aa, chain + ## HITS:1 COG:lin2816 KEGG:ns NR:ns ## COG: lin2816 COG1762 # Protein_GI_number: 16801877 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Listeria innocua # 2 153 3 154 154 101 34.0 6e-22 MLKEYVKEELILLNLDISNRNDLFRQLSEIFQERGYINEGFYDFIVEREENYPTGLDLGT HTVAIPHGNPEYIKQSFISVVTLQQPIKMKKMEDAEEEIDVAVFFVLGLSDGTQHLQILK QVIGVIQQETFVNRIKAAKTSEEVMKEISAIAVEK >gi|284795498|gb|ADDQ01000051.1| GENE 49 46269 - 46565 370 98 aa, chain + ## HITS:1 COG:ECs2896 KEGG:ns NR:ns ## COG: ECs2896 COG3414 # Protein_GI_number: 15832150 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIB component # Organism: Escherichia coli O157:H7 # 3 93 2 93 94 63 36.0 7e-11 MKKVNILVACGSGVATSTIAADEVKALCKEHGIHISLNKCSMTELPSMSKNADIVLTTNN FKGNLDVPLMSIMGFVTGINEDKLKHTLLEKLKEIQNA >gi|284795498|gb|ADDQ01000051.1| GENE 50 46731 - 47981 1474 416 aa, chain + ## HITS:1 COG:Z4877 KEGG:ns NR:ns ## COG: Z4877 COG3775 # Protein_GI_number: 15804015 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIC component # Organism: Escherichia coli O157:H7 EDL933 # 3 416 17 432 462 253 34.0 4e-67 MDTLVNIVQTITGMGASAILPIIITILGLVFRMKLGDAIKAGLTVGVGFIGLTLVVGLLN DSLSPAVDYYSEMGTGFTIADIGWPAVGAASWMAPFAGLAIPIGLVLNLILVRLKLTKTL NVDIWNYMHFLVPGALAYFIFDNFFIGLAVTVILSVLALFVGDWVAPMWQEYYGLEGTTC TTIIHTGWTLIAAWAMNKLIDFIPGLNKLDISLERVNKRIGVLGEPVIIGTIVGVLLGLL TRQDITTIIPMGMGVAGVMVLMPRVVGVLMDGLSPIGKAAKDFMTKQMGEDADLNIGMDV ALGLGDPTTTTTTVISIPLVMLCALALPGVKTFPIGILMSVIYMSVMTVMASKGNLLRSI LTTVLFCVIVMYLGGYVAPGATEMLNGAGVGLKGQGTDFVLTGPWSILTYWLSTIF >gi|284795498|gb|ADDQ01000051.1| GENE 51 48018 - 48662 884 214 aa, chain + ## HITS:1 COG:lin0505 KEGG:ns NR:ns ## COG: lin0505 COG0036 # Protein_GI_number: 16799580 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Listeria innocua # 1 213 1 213 216 233 55.0 2e-61 MAQILPSIFGADIMHLQDDINFLEEENTQILHVDLMDGNFVSNIAFGPNQIAEMKKNSTM IFDVHMMVKHPKDHIDDVLATGAEMISVHYESTPHIHSILQKIRQAGRKAGVVINPGTSE VVLEYLLDDIDYILIMTINPGQPGQSFIPKSLEKIRNTKQLIGHRKIDIEVDGGVNKEIA EKCVKAGAELIVVGGALFSGDKQAQYQLLKEAVK >gi|284795498|gb|ADDQ01000051.1| GENE 52 48742 - 49494 223 250 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 7 249 4 242 242 90 29 4e-17 MGNFEGKVALVTGAAHGIGKGIAEKFAAAGANTVIVDYNPETGTKTAEEITNKYVKSLFV QADVSDPAALTEAREKVFKEFGRIDFLVLNAGVAFANKVNDISFEEWNKTLSINLTGLFN TVKAFYNDFLDNQGSIVYISSGSALSGTGGGVSYPASKAGGEGLIRGLAKELGPKGVNVN AIAPRLIDTGEMMRVNYPTQESLDAVINKIPVRRFGTIEDVANLAIFLADPANSYIQGQT ILMDGGRTIA >gi|284795498|gb|ADDQ01000051.1| GENE 53 49511 - 50065 675 184 aa, chain + ## HITS:1 COG:BS_yckF KEGG:ns NR:ns ## COG: BS_yckF COG0794 # Protein_GI_number: 16077414 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted sugar phosphate isomerase involved in capsule formation # Organism: Bacillus subtilis # 4 184 6 185 185 140 44.0 2e-33 MKNYTLDILAELTQNAQRIDTNEIAHFVEQIKQANHIFLNGAGRSGIAIRAFANRLMHIG FSVSIVGEISSPHSKPGDLLIICSGSGETGSLKSLAEKAKQSGIDLALVTMKKESTIGQL ADVVLVLPGTTKEENDRETASFAQPMGSAFEQLAFLTFDGMVLNLMDELGETSETMFKRH ADFE >gi|284795498|gb|ADDQ01000051.1| GENE 54 50080 - 50157 145 25 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLVKSITEWESVYNGYGVYSCDESL >gi|284795498|gb|ADDQ01000051.1| GENE 55 50120 - 50218 209 32 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MATVFIVVMRAYEEDKEEKEWSKEKFLETYKI >gi|284795498|gb|ADDQ01000051.1| GENE 56 50690 - 51004 205 104 aa, chain + ## HITS:1 COG:no KEGG:lwe0796 NR:ns ## KEGG: lwe0796 # Name: not_defined # Def: phage integrase family protein # Organism: L.welshimeri # Pathway: not_defined # 68 104 350 386 386 67 89.0 2e-10 MDLTYIFIRYVTVTLKRQEDTFYKSQRKIFSHESTEFNQREQTGKLRHAEKGFTPEEIFE NKFECTQLIQERLGHANIQITLGTYGHLYVKSDSQVVDILDRII >gi|284795498|gb|ADDQ01000051.1| GENE 57 51286 - 51969 418 227 aa, chain + ## HITS:1 COG:no KEGG:EF2648 NR:ns ## KEGG: EF2648 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 227 1 227 227 399 99.0 1e-110 MKRKTIRILLISSGLILILLVGYRLYLEYQTDIQLFLNPKASKTQLLERIRSHGFSAALL LVFLTAIMCAVPGIPTSVIGVIAGLSFGPFSGTLINVLGNSLGNLVAIFLMHHIKFLDRK TETNHWVQSIRRMKHPKIGIMVGYMIPIIPSSVINFAADTMQLPLKNLIAAIFIGVIPSS ILYACGGEALFHGYNKTAVLLIVSVLLFVGLVVIIEKDRKRFQKTVL >gi|284795498|gb|ADDQ01000051.1| GENE 58 52079 - 53371 1282 430 aa, chain + ## HITS:1 COG:CAC2835 KEGG:ns NR:ns ## COG: CAC2835 COG2610 # Protein_GI_number: 15896090 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism # Function: H+/gluconate symporter and related permeases # Organism: Clostridium acetobutylicum # 6 375 4 374 384 313 58.0 4e-85 MPDITISWVAAILGLVVAIVLILKKFNPVYSLFFGAIVGCLIGGASLSDTVAVLLNGTQS IMGTAIRVLAAGMLAGVMMESGAAESIANAIVQKLGEKKAILSLALSTMVITAVGVFIPV AVLIVAPIALSVGKSTGISKLSLLIALSGGGKAGNIISPNPNTIAAANGFDLPLSDVMIA GFIPAVFGLITAVVLANIMRSKGSMVKETDLVEEQTKELLPLKKALIAPVLAIVLLLLNP IGAVLNISFIKSLNIDALYILPFASVVGTIAIGQTKQLAFYASSGLKRVTDTVLILIGAG AIAGLISVSDLSTQIVHLISVMGISGTFLAPISGILMGLAVGSTSTAVILATGSFGPAIL DMGTSSLSAAVMVHTGATVIDSVPQGNYFHITAQSMNMTIKERIRVIPYEMCVGGVMTIV ATILYGFILN >gi|284795498|gb|ADDQ01000051.1| GENE 59 53393 - 54541 1460 382 aa, chain + ## HITS:1 COG:L79277 KEGG:ns NR:ns ## COG: L79277 COG1929 # Protein_GI_number: 15672838 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerate kinase # Organism: Lactococcus lactis # 1 378 1 378 385 429 62.0 1e-120 MTKKFVLAPDSFKESMSAKEACLAMEKGILAVFKDADIQHVPMADGGEGTVDSLVDATGG TRVPVRVAGPLPDQIVETYYGLLGDQETVVIEMAKANGIELVKAAERNPLITSTYGTGEM IQHALNHGAKKIIIGIGGSVTNDGGAGMIQALGARLLDKEGQELKRGGGALDKLAQIDLT QFDQRIFATEVLVASDVNNPLTGPTGASHVFGPQKGATEEMVAQLDKNLAHYAAIIKREI GIDIEMMPGAGAAGGLGAGLLAFTKAQLRPGIDIVVEVNQLEEKIKAADYVFTGEGGMDF QTKFGKAPYGVSRLAKKYQKPVFACAGYIGKDVDVLYEEGMTAIFGILAKAEPLEAALKN GPVNLERTVENIARTLQLVPCD >gi|284795498|gb|ADDQ01000051.1| GENE 60 54683 - 55696 886 337 aa, chain + ## HITS:1 COG:CAC2833 KEGG:ns NR:ns ## COG: CAC2833 COG3835 # Protein_GI_number: 15896088 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Sugar diacid utilization regulator # Organism: Clostridium acetobutylicum # 2 327 1 337 344 137 31.0 4e-32 MLKLDKIQANKIVEKLMADIPYNINIMDERGKIIASGDSARIGERHRGAERAINERKNIE IYKDTSLEKKGTNEPIILNDHILGVVGISGEPDEVRKFTKLVRSIVLLLTEELNTQQERE KKKKQKNQFIQHLMHVDSAYSEALKLEALELYNLQLDDQNHCVLTKDKRLLSSYYPGHEI FEWENCYLVITSEPPQITKPVTEYLVISSEKATIQQMVQEAQNTYLLLSFLQLEKAKFYQ AEDFFIQGIFNFPFHIELDFFETIQTIYDEYYETVIFFANHNLNINETSQVLHIHRNTLN YRLKRIHELTGMDPKVWQDFWKLFYYFAYCFKERFEK >gi|284795498|gb|ADDQ01000051.1| GENE 61 55819 - 56706 1051 295 aa, chain + ## HITS:1 COG:lin0768 KEGG:ns NR:ns ## COG: lin0768 COG1597 # Protein_GI_number: 16799842 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Listeria innocua # 1 292 1 291 309 268 47.0 7e-72 MKKAVLIVNPSSGGEKAKEFETLAEEKLKQLFDEVVVKQTEKGGDAEQFAREAAESHFDS VFVMGGDGTVNEGISGLAEQAYRPKFGFFPLGTVNDLARALNLPMDPEEAIQQLDLEKTS ALDVGKINDDYFMNVVAIGTIPESINDVDVEQKTKLGKLAYFISGAKHLANAQTYPFHLS LDQKEQTIESSTVLVGLTNSIGGFETLLPEAQVDDGKLHLVYLKDQSLWDAVKAVPDLLK GVDQSTDNLVYLTFKEGTISLENQEELTTNVDGDEGAALPITLKILPKHLTVYCG >gi|284795498|gb|ADDQ01000051.1| GENE 62 56751 - 58523 637 590 aa, chain - ## HITS:1 COG:no KEGG:LC705_01992 NR:ns ## KEGG: LC705_01992 # Name: slp # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 22 577 17 563 593 316 32.0 2e-84 MNKKNNTFSCFLNNYKNLILSIGIILLTAFLIISAQLFRHSIILGSDNNFFMNKIYESYM QQKTGTYNYFQSVYGFQQSGRIINAVYAPDFSFILGGLLAIAKNWFRFQVLSGFFCLFSA GISMFVLGRYCKITYKYSVSMSLLYMSTSAISVFITSEASSGWASAILPLVFIPAIKMVT DSSRPIQPVLLSLPVVLIINLHVFSTFLVILALIPFFIIGIFKTKDKLKMLIDAFLAALL TLLLTSRLITGMLEVFTTNQLLKPYSVDKMLPYSMKVSLDVQGWSSLGIFFTIIFLFLCI LTIFNWTTIPFIEKVLNSIGLFFLLISSNLLPWDDIPRLIPIIQGIQFPQRFASVSFVLL ILSFTLFLQRISFNKFHLYSYSTIIYMTVSILSCLLIHQAILSSANTWHSNKPLSNDSSS LKTKINDMTKVKELYGGKNELGDPLKVVIKPLTDYLPINNQLQQKESPYTTYWNEVANSN LKVAKHVLSDGRLQLNWTNESNESVETLLPAIAYSRSELWLNEKKLSTSQYKTSTIGSII LQAVPGKNSLVLGYKPTTAFIITKYVQNISYICLVLYLIYAGIYKIKKRH >gi|284795498|gb|ADDQ01000051.1| GENE 63 58696 - 59382 603 228 aa, chain + ## HITS:1 COG:L62955 KEGG:ns NR:ns ## COG: L62955 COG3597 # Protein_GI_number: 15672246 # Func_class: S Function unknown # Function: Uncharacterized protein/domain associated with GTPases # Organism: Lactococcus lactis # 9 228 3 216 217 238 56.0 1e-62 MFKSKIKSEKSKKNINELTKEVPEEVIEDPEFRSFFQDVLKKFPQKTSTAIMNAFATSKG KAEQLVTNSQTQLDKVFDEFLAGVSPDVKKKSHQTIHFAALSAAIIGFSPIPFSDAFLLV PVQLTMMSRLHKIFGQSWSESLGKSLTKELVVVSLGKSAVGNILKVIPVVGTVTGGMVNA SVAVAITEALGWVTVKMLNDGVDIFDDVMSFKGQFSTLFKAIQNAKKK >gi|284795498|gb|ADDQ01000051.1| GENE 64 59666 - 61375 1947 569 aa, chain - ## HITS:1 COG:SPy0184_1 KEGG:ns NR:ns ## COG: SPy0184_1 COG4176 # Protein_GI_number: 15674389 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 5 305 8 306 306 368 64.0 1e-101 MNKYQLPVASWVESFTDWLTSTFAGLFSFLQTIGQSVMDNITALLTAVPPLVLIVLLTIA AFFISNKKIGLSLFTFIGLMFIYNQNLWNDLMSTVTLVLLSSVISIIIGVPLGILMAKSE KAKSIITPILDFMQTMPGFVYLIPAVAFFGIGMVPGVFASVIFALPPTVRFTNLGIRQVP NELVEAADSYGSTGWQKLFKLELPLAKNTIMAGVNQTTMLALSMVVIASMIGAPGLGRGV LSALQRAQVGNGFVNGVALVILAIIIDRFTQHLNNKKAAPKAAGATSKKKKYGIIAAVVV IVAGLVGASIFTTTNDKQISLSYVEWDTEVASTHVVAEVLKDMGYDVKTTPLDNAIMWES VAKGETDAMVGAWLPGTHAEQYKQYKDKLDDLGENLKGAKLGIVVPSYMDVDSIEDLSDQ AGKKITGIEPGAGVVAAAEKTKEAYPNLKDWSVETSSSGAMTVALGQAIKNNEDIVITGW SPHWMFAKYDLKYLADPKGTMGGEEAIHTMARQGLKEDQPEAYKVLDNFHWTTKDMESVM LEINEGKDPQEAARDWVDSHKDQVAEWKK >gi|284795498|gb|ADDQ01000051.1| GENE 65 61368 - 62558 1569 396 aa, chain - ## HITS:1 COG:L74195 KEGG:ns NR:ns ## COG: L74195 COG4175 # Protein_GI_number: 15673434 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport system, ATPase component # Organism: Lactococcus lactis # 1 389 1 391 408 550 74.0 1e-156 MPKVKVNHLTKIFGKKTKPALEMIRANKSKTEILEKTGATVGVYDVNFEVEEGEIFVIMG LSGSGKSTLIRLLNRLIEPTSGNIYIDGQDISSLDKEGLREVRRNKMSMVFQNFGLFPHR TILENTEYGLEIRGVPKEERQAKAEKALENSSLIAFKDQLPSQLSGGMQQRVGLARALAN DPEILLMDEAFSALDPLIRREMQDELLDLQENVKKTIIFITHDLNEALRIGDRIALMKDG QIMQIGTGEEILTNPANEYVRTFVEDVDRSKVLTAQNIMVPALTTNIEIDGPTVALKRMR QEEVSMLLAVDKKRQLKGVVRAEKALEARKNGTSLVECVDPEIQTIDKDMLVNDIFPLIY DAQTPLAVTDNGKLLGVVIRGSVLEALAETEVNEHE >gi|284795498|gb|ADDQ01000051.1| GENE 66 62759 - 63391 621 210 aa, chain - ## HITS:1 COG:SPy1259_1 KEGG:ns NR:ns ## COG: SPy1259_1 COG2188 # Protein_GI_number: 15675218 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 149 1 149 149 109 36.0 4e-24 MASKKISLTKPKYQQIAVDVAEKIAEGKLHVGDKIHARSTLANQYQVSPETARKAIIVLV DLEIVKAKHGSGFYVASKEKAQDFVTQYQDVQTIAEIKEELLDSVAKQKEELTHFSSILD TLVEQTKRFDSFNPMNPYSLVLTEEAAYLEATISEMNFWQNTSATIIAIKHKEELLVSPG PYAKISLNDTLYFVGHDESTLQRVQNFFYP >gi|284795498|gb|ADDQ01000051.1| GENE 67 63406 - 65352 1978 648 aa, chain - ## HITS:1 COG:lin2179 KEGG:ns NR:ns ## COG: lin2179 COG0488 # Protein_GI_number: 16801244 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Listeria innocua # 1 644 1 650 650 670 57.0 0 MILLQANQVARHFGSETLFENIHLEIATKSRIALVGRNGAGKSTFLKIIAGIDAPDSGTI AKNKTATLGYLAQNTGLESDKTVWDEMTKAFADILEMEQRMRELETKISEMEPTTSVYEG ILKEYDQLQHTFSEKNGYGYENEIRSVLHGFGFDESFYTKDIQTLSGGQKTRLALARMLL QKPDILILDEPTNHLDIETLSWLESYLPSYAGALLIVSHDRYFLDKVVNEVYELSRKKMT HYKGNYSKYLELKAEQLASEWKAYEKQQEEINKLEDFVAKNLVRASTTKRAQSRRKVLEK MDRLDRPQGDEKSAHFLFDSEKVSGNVVLQVEDAAIGYDQEHILSEPIHLDIRRKEAIAL VGPNGIGKSTLLKSIIDRIPFIKGSKTFGTNVSVGYYDQEQANLHGNKTVLAELWDEHPT TPEKEIRSILGGFLFSGDDVEKTIPLLSGGEKARVALAKLAMDRDNFLILDEPTNHLDID NKEVLENALIDYEGTILFVSHDRYFINRIATKVVELSEKGSKLYLGDYDYYLEKKQEEEE IAALLANEEAAKKPGPVTAKNTFYQNKEQQKLLRTLQRKITQVEENLAQLDTTIAQLEAQ MSQPDILENHVELLALNQQLDDARQQQDELLEQWENFSLELEEMENNN >gi|284795498|gb|ADDQ01000051.1| GENE 68 65566 - 66216 859 216 aa, chain + ## HITS:1 COG:lin2178 KEGG:ns NR:ns ## COG: lin2178 COG2344 # Protein_GI_number: 16801243 # Func_class: R General function prediction only # Function: AT-rich DNA-binding protein # Organism: Listeria innocua # 6 207 8 209 215 246 60.0 2e-65 MKDQVIPKATARRLPLYYRYLRMLHDTGKNKVSSTELSEAVQVDSATIRRDFSYFGELGK RGYGYDVENLMNFFAKTLNEDELTNVALIGVGNLGSALLKYKFHQSNSIRVSCAFDVNED IVGRIVDGIPVYPMEDMMEQIRVQQIEVAILTIPARKAQEVVNKLAEAGVKGILNFTAAR LVAPPEVLIQNVDLTNELQTLIYFLHHDNELIDEEE >gi|284795498|gb|ADDQ01000051.1| GENE 69 66259 - 66912 598 217 aa, chain - ## HITS:1 COG:BS_ydiL KEGG:ns NR:ns ## COG: BS_ydiL COG1266 # Protein_GI_number: 16077668 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Bacillus subtilis # 3 209 1 221 244 109 38.0 4e-24 MTLRKSSLFILVTYIIAFFGPLLFSGISPNAAINVTTALYIIGALVMIGIFLKTTEPSPL EETATLKSPIFIFLLGVSGIFIAMLIQGVTFAIEVAITGEQATSQNTQAIVAVILANPLF ILATTIGGPIMEEFVFRYAFIHLIQPFTNFWIAATVSSAIFSLAHADGHFFVYFFMGFFF ALLYKQTGKIWTSIIAHCGMNTIVIIVQLLLHNGAIQ >gi|284795498|gb|ADDQ01000051.1| GENE 70 66931 - 67107 205 58 aa, chain - ## HITS:1 COG:no KEGG:EF2636 NR:ns ## KEGG: EF2636 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 58 1 58 58 76 100.0 3e-13 MKQRLLTALIATFVYFVIANLGNLVFSVTEGIVSTLWESLFFFLFVFLLLGYRNNRKK >gi|284795498|gb|ADDQ01000051.1| GENE 71 67340 - 67624 428 94 aa, chain + ## HITS:1 COG:lin2175 KEGG:ns NR:ns ## COG: lin2175 COG0234 # Protein_GI_number: 16801240 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Co-chaperonin GroES (HSP10) # Organism: Listeria innocua # 1 91 1 91 94 107 68.0 7e-24 MLKPLGDRVVIRVAKEEEKTVGGIVLASVAKEKPQTGEVIAVGEGRVLENGTKVPMEVKI GDTVMFEKYSGTEVKYEGVEYLIVSAKDIIATVE >gi|284795498|gb|ADDQ01000051.1| GENE 72 67682 - 69307 1605 541 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 [Haemophilus parasuis 29755] # 2 541 3 547 547 622 59 1e-177 MAKEIKFAEDARAAMLRGVDVLADTVKVTLGPKGRNVVLEKSFGSPLITNDGVTIAKEIE LEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGLKNVTAGANPLGIRRGIE LATKTAVEELHNISSVVDSKEAIAQVAAVSSGSEKVGQLIADAMEKVGNDGVITIEESKG IETELDVVEGMQFDRGYLSQYMVTDNDKMEAVLENPYILITDKKISNIQDILPLLEQILQ QSRPLLIIADDVDGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGTVIT DDLGLELKDTTIENLGNASKVVVDKDNTTIVEGAGSKEAIDARVHLIKNQIGETTSDFDR EKLQERLAKLAGGVAVVKVGAATETELKELKLRIEDALNATRAAVEEGMVSGGGTALVNV IGKVAALEAEGDVATGIKIVVRALEEPIRQIAENAGYEGSVIVDKLKNVDLGIGFNAANG EWVNMVEAGIVDPTKVTRSALQNAASVSALLLTTEAVVADKPEPAAPAPMMDPSMGMGGM M >gi|284795498|gb|ADDQ01000051.1| GENE 73 69611 - 70330 758 239 aa, chain + ## HITS:1 COG:SA0017 KEGG:ns NR:ns ## COG: SA0017 COG0745 # Protein_GI_number: 15925723 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Staphylococcus aureus N315 # 63 237 65 231 235 78 32.0 1e-14 MEKYTIGVVPLTIETKEYCQNWFVSNQVECQIIQGTNILLHLHHIDGLVIEVTDHQQVNT CCELLMTIRKQSDLPIWLFSRTEVISKVNRIIYLQLGADGVFDHSYDRQECMLSMSNLLQ RVKRRFYPKLVSANEEQTVTKNLSERLYLIAPNLSVCLGSGEEILLTKLEFFTIEYLYKH AGQTITYEELYKNVWKDTANERKYRVANVIFHLRKKIEQDVNKPQYIKTIRSKGYMLTV >gi|284795498|gb|ADDQ01000051.1| GENE 74 70354 - 71064 842 236 aa, chain + ## HITS:1 COG:no KEGG:EF2629 NR:ns ## KEGG: EF2629 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 236 1 236 236 238 98.0 1e-61 MWQFLTKNNEDEEYEKMPDFENEQSGKAQPKVTEEAIFDDEFVYAKEQSAKVKQVQQQVP TELSEESFSFVEKLEEENQLYQQSIKKLTEQLLMQTNEVEALQKQVVEKDVQLKHVKETL SDKETTITSLQKQLSEEKMQQRQTSEENLDTAVTLSQKEIGEVLLEAKRQAKETISQANQ QVATVHEEMEQRLATLTRMKQVAREYQAYCEQMLTIKNESTGTYQQIEQLLAEIKR >gi|284795498|gb|ADDQ01000051.1| GENE 75 71081 - 72628 1068 515 aa, chain + ## HITS:1 COG:lin2838_1 KEGG:ns NR:ns ## COG: lin2838_1 COG1705 # Protein_GI_number: 16801898 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Listeria innocua # 116 345 82 309 340 150 43.0 8e-36 MKKRKARYLKLVCLGVLGTYAGASYYNSEPLIAQEETETSHENRQLVLEEKRADQVNQDQ GTLTSSTLNETVISSSEQQESSIQDDSSDHQENNVEPSESENSLPPQEKPIASTKPTESL QNEQPVSEERKALTEKSPHNQEPQNSTLTEKTKEPLVHSEIDNSQEKEKQAGIQQQAEAN FVVQENASTSEFIRKIGEEARVIGQQHDLYASVMIAQAILESGSGNSALAAPPNYNLFGI KGAYQGQSVSFPTQEDDGKGKMTTIHADFRQYPSYKESLTDYSKLIINGLAGNPTFYHGV LKANTTNYQQATKFLTGRYATDTYYDKKLNALIETYQLTEYDQEKKKPVVTNLAEEKKPS FDKEAVKEQLKKEAVIYEVSKGDSLATISQTFGVSATAILKQNSKTQEMFYIGQKITIPQ HTAATSLEPKEQALLQSLIISKSVTNALKTAEQSNGKANDSKTESTEYYEVKRGETLAKI AKKTGYSLTALKQTNDLTYSVLTEGQTIALPKLKD >gi|284795498|gb|ADDQ01000051.1| GENE 76 72846 - 73256 296 136 aa, chain + ## HITS:1 COG:lin2694 KEGG:ns NR:ns ## COG: lin2694 COG2246 # Protein_GI_number: 16801755 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 11 135 21 145 145 100 46.0 9e-22 MKELFRKYREVLAYLFFGGATTVVNLVVFFVCQNVLGLDYKISNTISWFLSVLFAFFTNK YWVFASKHESIAGFFKEMGLFYWYRILSFVADMGLMILLIDGIHFSSFWAKMITQVVVVI LNYFFSKFFIFKEKEV >gi|284795498|gb|ADDQ01000051.1| GENE 77 73334 - 74818 1638 494 aa, chain + ## HITS:1 COG:L107468 KEGG:ns NR:ns ## COG: L107468 COG1488 # Protein_GI_number: 15673082 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid phosphoribosyltransferase # Organism: Lactococcus lactis # 1 483 6 487 495 771 76.0 0 MDYTYADDSLTLHTDMYQINMMQTYWELGRADLHAVFECYFREMPFNHGYAIFAGLERLV NYLENLTFTESDIAYLREVEEYPEDFLTYLANFEFKCTVRSALEGDLVFNNEPLIQIEGP LAQCQLVETALLNMVNFQTLIATKAARIKSVIGDDPLLEFGTRRAQELDAAIWGTRAAYI GGADATSNVRAGKIFGIPVSGTHAHSLVQSYGNDYEAFMAYAKTHRDCVFLVDTYDTLKA GVPSAIRVAREMGDKINFLGVRIDSGDMAYISKRVREQLDEAGFTEAKIYASNDLDENTI LNLKMQKSKIDVWGVGTKLITAYDQPALGAVFKLVSIEGEDGQMKDTIKLSSNAEKVTTP GKKQVWRITRKSDKKSEGDYVTLWNEDPRQEEEIYMFHPVHTFINKYVRDFEARPVLQDI FVEGKRVYELPTLDEIKQYAKENLDSLWEEYKRDLNPQKYPVDLSTDCWNHKMNLLEKVR KDVKHLTETVNKEA >gi|284795498|gb|ADDQ01000051.1| GENE 78 74821 - 75648 1142 275 aa, chain + ## HITS:1 COG:SP1420 KEGG:ns NR:ns ## COG: SP1420 COG0171 # Protein_GI_number: 15901273 # Func_class: H Coenzyme transport and metabolism # Function: NAD synthase # Organism: Streptococcus pneumoniae TIGR4 # 3 275 2 274 274 416 76.0 1e-116 MTTLQEKIIQELGVLPTIDPKEEVRKSIDFLKAYLTKHPFLKTFVLGISGGQDSTLAGRL AQLAMTEMREETGDMSYQFIAIRLPYGEQADEADAQAALAFIQPDVSLRVDIKPAVDAMV GSLENAGVQISDFNKGNMKARQRMITQYAVAGENAGAVIGTDHAAENVTAFFTKYGDGGA DILPLFRLNKRQGKALLKELGAPEALYLKIPTADLEDDKPLVADEVALGVTYDAIDDYLE GKKVSETDQQTIENWYKKGQHKRHLPITIFDDFWK >gi|284795498|gb|ADDQ01000051.1| GENE 79 75841 - 77646 1994 601 aa, chain + ## HITS:1 COG:L96595 KEGG:ns NR:ns ## COG: L96595 COG2217 # Protein_GI_number: 15672077 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 1 598 1 592 593 555 51.0 1e-157 MKHVTKLGITIITGVLALLFEFILHQPNWAYGIILITGSVMALMMFWEMIQTLREGKYGV DILAITAIVATLAVGEYWASLMILIMLTGGDSLEDYAAGKANQELKSLLDNSPQKAHRLN GENLEDVSVEEINVGDELVVKPGELVPVDGLVKTGTSTVDESSLTGESKPIEKNPGDELM SGSVNGDGSLKMVAEKTVADSQYQTIVNLVKESAARPAHFVRLADRYAVPFTLIAYLIAG VAWFVSKSPTRFAEVLVVASPCPLILSAPIALVAGMGRSSRHGVVIKSGTMVEKLASAKT IAFDKTGTITQGQLSVDQVQPINAEITAAELVGLAASVEQESSHILARSIVAYARKQDVP LKNITDLAEVSGAGVKAFVDGAEIRVGKKNFVTQESQTTEKIDKTTIHISRNGTYLGRIT FTDTVRPEAKETMEKLHQLHLQRILMLTGDQESVAETIAAEVGITEVHGECLPQDKLTIL KELPKENHPVIMVGDGVNDAPSLAAADVGIAMGAHGATAASETADVVILKDDLSKVSQAV EIAQDTMKIAKQSVLIGIFICVLLMLIASTGIIPALIGAMLQEVVDTVSILSALRARRIG K >gi|284795498|gb|ADDQ01000051.1| GENE 80 77738 - 78022 412 94 aa, chain + ## HITS:1 COG:L86826 KEGG:ns NR:ns ## COG: L86826 COG3592 # Protein_GI_number: 15672668 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 90 15 104 104 117 62.0 4e-27 MKGNQIDGQPVTEEQLLKEGYRKYTGEGIDIFYNKDICEHIGNCVRGNPEVFEVGRKPWI IPDNGSVENDMIVVDSCPSGALKYIRKAGNEYAN >gi|284795498|gb|ADDQ01000051.1| GENE 81 78012 - 78287 374 91 aa, chain + ## HITS:1 COG:lin0181 KEGG:ns NR:ns ## COG: lin0181 COG2388 # Protein_GI_number: 16799258 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Listeria innocua # 1 88 1 88 92 90 55.0 5e-19 MQIKEENNRFALYNDENQEIGEMTWSDAGESMMIIDHTFVDPTYRGQKLAEKLVLAGVEK ARKEHKKIIPLCPFAKKEFDTKPEYGDVLRK >gi|284795498|gb|ADDQ01000051.1| GENE 82 78455 - 78691 344 78 aa, chain + ## HITS:1 COG:L0338 KEGG:ns NR:ns ## COG: L0338 COG1314 # Protein_GI_number: 15672923 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecG # Organism: Lactococcus lactis # 1 78 5 82 82 72 46.0 2e-13 MYNLILTLVIILSVLIVITVMMQPSKQNSAASAFTGGADKLFGKQKARGFEAVMQRSTAV LGAIWMILLFVLAFLSSK >gi|284795498|gb|ADDQ01000051.1| GENE 83 78846 - 79610 895 254 aa, chain + ## HITS:1 COG:BH3554 KEGG:ns NR:ns ## COG: BH3554 COG1647 # Protein_GI_number: 15616116 # Func_class: R General function prediction only # Function: Esterase/lipase # Organism: Bacillus halodurans # 4 252 2 248 248 164 35.0 1e-40 MAKKINLPKPLFSEKGKRAVLLLHAYSGSSNDVRMLSRRLEKENYTVYSPNFSGHGTLVP EDILDQTTEQWWQDTQEAVAFLRERGYQEIAIFGLSMGGIFSMHALTEQLTGLIGGGFFC SPIYPVANKVPENFVLYAENVMKIAEVPAEEQQSRLQSIEQRVKQQLGAIETIASQTADK LNKIHAPLFLAQAGKDEMIEPMGVYQTAQALTQARVTLQWYPNSGHVITVSGEHKQLEQD VVQFLATLPWNEEK >gi|284795498|gb|ADDQ01000051.1| GENE 84 79610 - 81979 1621 789 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 [Clostridium acetobutylicum ATCC 824] # 6 746 3 726 730 629 44 1e-179 MTKQTIKEQILHFMESQKKKSFSMEEIAQGLNLEKSSDFKILVQTIAQMEREKSVSFNKK GKVLLPMKDLLIEGTFRANERGFGFVTIDPEEPDVYIPKEATNFAMDGDTVLIDVIQHAD PFSDRGAEGKVKEIKERAVSQVVGEFVAYSEEEMAEMGLYGYMIPKDKKLNQYTVSIAPE GIKPVDGSIVIAEITYYPDQEYPTSMEGLVKQVIGHKNDPGMDILSIVVAHGIPTAFPDE VLAEADQVPETIAESDLVGRRDLRDQLIVTIDGEDAKDLDDAVTVQKLANGNFFLGVHIA DVSYYVTEGSQLDMEAYERGTSVYLTDRVVPMIPQRLSNGICSLNPHVPRLTMSCEMEIT PEGEVISHEIFQSVIQTTERMTYTAVNEILEEQKPETLERYKELVPMFKEMGELHHILEE MRMRRGAISFEDREAKVLVDENGHPQDILLRTRGVGERLIESFMLAANETVARHYHDLKL PFIYRIHEQPKEEKMQRFFDFAAVLGILVKGTKENISPKDLQKVLEQVENKPEEVVINTM LLRSMQQAKYSEDNYGHYGLAAEYYTHFTSPIRRYPDLIVHRLIRSYSQDQSEKNQEKWN ESLPEIANHSSSMERRAVDAEREVDAMKKAEFMVDKVGETYDGIISSVTKFGIFVELPNT IEGLIHVNNLKQDYFHFIENHMALVGERTGMTLKIGQKVQIRVEKADPETREVDFELISA EEVAPVEGPKGRKKGKANSSTRSNNQRRNKKDESFDGKKKKNKKKGKGKKQPFYKEAMKQ KNKKGKKKK >gi|284795498|gb|ADDQ01000051.1| GENE 85 81992 - 82456 596 154 aa, chain + ## HITS:1 COG:lin2542 KEGG:ns NR:ns ## COG: lin2542 COG0691 # Protein_GI_number: 16801604 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: tmRNA-binding protein # Organism: Listeria innocua # 1 154 1 154 154 209 72.0 2e-54 MPKGGGKLIAQNRKARHDYSIIDTVEAGLVLQGTEIKSIRNGRINLKDGFARIRNGEAFL YNVHISPYEQGNIFNHDPLRTRKLLLHKKQINKLIGETKNAGITLVPLKVYIKDGYAKVL IGLAKGKKQYDKREDLKRKEVDRQISRTLKNNRR >gi|284795498|gb|ADDQ01000051.1| GENE 86 82535 - 82636 72 33 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNVNDSFFNRFGKQYHPALDWFMEKVFQPIFNT >gi|284795498|gb|ADDQ01000051.1| GENE 87 82759 - 83478 640 239 aa, chain + ## HITS:1 COG:lin2679 KEGG:ns NR:ns ## COG: lin2679 COG0356 # Protein_GI_number: 16801740 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit a # Organism: Listeria innocua # 1 238 1 237 238 225 52.0 6e-59 MEEKKLLFNIGPIWFDGTIVLMVLLTCIIVFAFVYACTRNMKLRPKGKQTVIEWLVDFIR GIITDNLPRKEVSNFHLMAFTLFMFVLVSNILGLVTKIVVGDDLSVWKSPTADPIVTLTL AMMMIVLTHFFGMKRFGFKGYLVNSYLRPVGFLLPVKLMEEFTNLLTLGLRLYGNIFAGE VLLGLIAGTVASVGLWVIPLAIPLEMIWVAFSIFIGCIQAFIFVTLSMVYMSHKIETEE >gi|284795498|gb|ADDQ01000051.1| GENE 88 83527 - 83748 415 73 aa, chain + ## HITS:1 COG:SA1910 KEGG:ns NR:ns ## COG: SA1910 COG0636 # Protein_GI_number: 15927682 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K # Organism: Staphylococcus aureus N315 # 4 69 1 66 70 60 59.0 1e-09 MEGLNFIAAAIAIFGSAIGAAIGNGQVISKTIESMTRQPEMSGQLRTTMFIGVALIEAVP ILGVVVSLLLLFR >gi|284795498|gb|ADDQ01000051.1| GENE 89 83886 - 84416 799 176 aa, chain + ## HITS:1 COG:L11208 KEGG:ns NR:ns ## COG: L11208 COG0711 # Protein_GI_number: 15673750 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit b # Organism: Lactococcus lactis # 10 171 7 168 168 122 46.0 2e-28 MLLTTLVVGETAPSTTLGTMIVVSGAFLILMLLLKKYAWGAIVDILTQREEKIANDLDSA EQSRVAAAKMEKERQQQLLSSRSEAAEIIKNAKESGEQTRQKTLKETTAEVTRLREKART DISQEREEALSSVKNEVADLSLQIAAKILNKELTPDAHEALIDSYIESLGKANETR >gi|284795498|gb|ADDQ01000051.1| GENE 90 84403 - 84945 714 180 aa, chain + ## HITS:1 COG:BH3757 KEGG:ns NR:ns ## COG: BH3757 COG0712 # Protein_GI_number: 15616319 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) # Organism: Bacillus halodurans # 3 179 1 178 183 77 28.0 9e-15 MKLDKYTVGKRYGKALFELAVEKNQAEAIYQELLTLREVYHQVPGIGDILSDDRLEPYEK DSIMEKLVTGFSEMMQNFLRVVYEYRRMYDLLLMIDEYERRYDEHQGLILGSVTTAIPLS KEQHQAMEEKAAQLLGYEQAHLVNLIDPSIVGGVVIEANHQVIDGSIRKQLEHMQQKLLK >gi|284795498|gb|ADDQ01000051.1| GENE 91 84974 - 86530 2177 518 aa, chain + ## HITS:1 COG:SPy0758 KEGG:ns NR:ns ## COG: SPy0758 COG0056 # Protein_GI_number: 15674806 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, alpha subunit # Organism: Streptococcus pyogenes M1 GAS # 1 496 1 496 502 808 82.0 0 MAIKAEEISALIKEQIENYQQQLAVEEVGTVTYVGDGIARAHGLENAMSGELVEFSNGSY GMAQNLETNDVGIIILGDFETIREGDKVQRTGKIMEVPVGEALIGRVVNPLGQPLDGLGE IKTDKTRPVEATAPGVMQRQSVAEPMQTGLKAIDALVPIGRGQRELVIGDRKTGKTSIAI DTIINQKGQDVICIYVAIGQKESTVRNQVETLRKFGALDYTIVVTAGASQPAPLLYIAPY AGTAMGEEFMYNGKHVLIIFDDLSKQAVAYRELSLLLRRPPGREAYPGDVFYLHSRLLER AAKLSDELGGGSMTALPFVETQAGDISAYIPTNVISITDGQIFLESDLFYAGTRPAVDAG LSVSRVGGSAQIKAMKKVAGTLRLDLASYRELEAFTQFGSDLDAATQAKLNRGRRTVEIL KQKLHAPLPVEKQVLILYALTHGFLDSVSVDKILHFEQDLFDYFDGKHADLLETIRTTKD LPDTDALDAAITEFSEMFAAANNSGDSAKEALEKIDNA >gi|284795498|gb|ADDQ01000051.1| GENE 92 86546 - 87454 1063 302 aa, chain + ## HITS:1 COG:SP1509 KEGG:ns NR:ns ## COG: SP1509 COG0224 # Protein_GI_number: 15901356 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, gamma subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 302 1 292 292 354 65.0 1e-97 MGASLNEIKQRIASTKKTSQITKAMQMVSAAKLTKSEGASKSFQEYSSKIRSVVTHLVAA QLSELRETEQSSLSEGSYHVMLAQRPVKKTGYIVITSDKGLVGGYNSSILKQTMSMIQED HDSNKEYALIAIGGTGADFFKARGIDVSYELRGLTDQPTFEEVRKIVTTATTMYQNEVFD ELYVCYNHHVNSLTSQFRVEKMLPITDLDPSEATSYEQEYLLEPSPEAILDQLLPQYAES LIYGAIIDAKTAEHAAGMTAMKTATDNAQNIISDLTISYNRARQGAITQEITEIVAGAAA LE >gi|284795498|gb|ADDQ01000051.1| GENE 93 87528 - 88934 1877 468 aa, chain + ## HITS:1 COG:SP1508 KEGG:ns NR:ns ## COG: SP1508 COG0055 # Protein_GI_number: 15901355 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, beta subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 468 1 468 468 796 87.0 0 MSSGKIVQVIGPVVDVEFSLDQSLPDINNALVVYKNGEAKQKVVLEVALELGDGVIRSIA MESTDGLQRGMEVIDTGKSISVPVGKDTLGRVFNVLGDTIDLEAPFPADAERSGIHKKAP AFDELSTSNEILETGIKVIDLLAPYLKGGKVGLFGGAGVGKTVLIQELIHNIAQEHGGIS VFTGVGERTREGNDLYYEMKDSGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVE GQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSITSI QAIYVPADDYTDPAPATAFAHLDATTNLERKLTEQGIYPAVDPLASSSSALAPEIVGEEH YEVATEVQHILQRYRELQDIIAILGMDELSDDEKVLVGRARRVQFFLSQNFNVAEQFTGQ PGSYVPVAETVRGFKEILEGKHDNLPEEAFRSVGKIEDAIEKAKQLNY >gi|284795498|gb|ADDQ01000051.1| GENE 94 88951 - 89370 628 139 aa, chain + ## HITS:1 COG:SPy0761 KEGG:ns NR:ns ## COG: SPy0761 COG0355 # Protein_GI_number: 15674809 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) # Organism: Streptococcus pyogenes M1 GAS # 1 137 1 137 138 149 60.0 1e-36 MDSLTVNVVTPNGLVYDHHAKIVVAKTTDGEIGILPKHAPIIVPLAIDEVRIKRTDSDTH VDWVAVNGGIMEVRDNVVSIIADSAERERDIDVPRAERAKQRAERLIEEAKAKDDRDQLR RATVALHRAINRINVSKHG >gi|284795498|gb|ADDQ01000051.1| GENE 95 89559 - 89795 161 78 aa, chain + ## HITS:1 COG:no KEGG:EF2606 NR:ns ## KEGG: EF2606 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 78 1 78 78 112 100.0 5e-24 MQYYGVDAIVRIVSHLMFIYISFWALQSLRIEQFFKTQFTPQIRMLMVFFAIAIGYTVSS FALELIALCRNLFIVYFP >gi|284795498|gb|ADDQ01000051.1| GENE 96 89898 - 91199 1702 433 aa, chain + ## HITS:1 COG:lin2670 KEGG:ns NR:ns ## COG: lin2670 COG0766 # Protein_GI_number: 16801731 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Listeria innocua # 1 425 1 422 430 526 70.0 1e-149 MEQIIVHGGNTKLEGTVKIEGAKNAVLPILAATLLAEEGVTTLKNVPILSDVFTMNQVIK HLNVAIDFDEDANEVTIDATQPLGIEANYEYVSKMRASIVVMGPLLARNGHAKVAMPGGC AIGKRPIDLHLKGFQALGAKIIQKNGYIEAIADELIGNTIYLDFPSVGATQNIMMAAVRA KGTTIIENVAREPEIVDLANILNKMGANVIGAGTETMRIEGVDKLHAVEHSIVQDRIEAG TFMVAAAMTEGNVLIEEAISEHNRPLISKLTEMGAIIEEEENGIRVIGPKHLKPTDVKTM PHPGFPTDMQAQMTAIQMFAEGTSIVTETVFENRYQHLEEMRRMNADLKIDGNIAVINGG NELQGAAVEATDLRAAAALILVGLRANGITRVSNLKYLDRGYYEFHKKLQKLGANVERVN DEKIEEKQATTVI >gi|284795498|gb|ADDQ01000051.1| GENE 97 91213 - 91389 290 58 aa, chain + ## HITS:1 COG:no KEGG:EF2604 NR:ns ## KEGG: EF2604 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 58 1 58 58 82 100.0 5e-15 MSSFRYILVTLLKILVVISLVIILFVVGTMIGYGLIGNGNPMDVFDEKIWTHIMNFFK >gi|284795498|gb|ADDQ01000051.1| GENE 98 91517 - 91885 429 122 aa, chain + ## HITS:1 COG:lin0546 KEGG:ns NR:ns ## COG: lin0546 COG3731 # Protein_GI_number: 16799621 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIA # Organism: Listeria innocua # 15 117 17 116 116 73 35.0 1e-13 MQATVTEIGKHAIDDSEKMIILFGETATDTLKQHAVIQSFPEKDQVTLAEGDHLKIGDTN YTITKVGSFANSNLQSIAHSTLIFADAPTDEDDVIRNGVYLTPHQLPKITIGTTIDYLVN GA >gi|284795498|gb|ADDQ01000051.1| GENE 99 91890 - 93059 1448 389 aa, chain + ## HITS:1 COG:SP1505 KEGG:ns NR:ns ## COG: SP1505 COG0628 # Protein_GI_number: 15901352 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Streptococcus pneumoniae TIGR4 # 11 379 10 378 388 351 51.0 1e-96 MDKKQTTDKRLSWFWRWFLNNQVVTALLIVLLVLLIILTFTKVSYLFKPVWQFFGVVGLP VIMAGILYYLLNPIVDYLEKKQISRVWSIIGLFILIVALLIWGGIVIVPKIREQSVSFVN HFPQYIDTIDQKSQEILSDPLFAQFREQLEAAGDKVVSSLGTIIKNVSTFTVQGIGNFFG AVATIFVAIITMPFILFYLLKDGKNLAPYLMKFLPVKMRKPTLKVLAEVNDQVSSYIRGQ LTVAFAVAIMFMIGFSVIGLDYAVTLGIAAGFLNLIPYLGSFLAMIPAVFLGIVSGPALL IKVLIVFAIEQTVEGRFISPLVLGSQLSIHPVTILVVLLTSGKLFGIVGVILGIPVYAAA KVIITHIFEWYQIVSGLYDEDKPDQQEST >gi|284795498|gb|ADDQ01000051.1| GENE 100 93121 - 93747 842 208 aa, chain - ## HITS:1 COG:BS_yvaB KEGG:ns NR:ns ## COG: BS_yvaB COG1182 # Protein_GI_number: 16080407 # Func_class: I Lipid transport and metabolism # Function: Acyl carrier protein phosphodiesterase # Organism: Bacillus subtilis # 1 208 1 211 211 191 44.0 6e-49 MSKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLS AWGALRAGAAFETLSENQQQKVARFNELTDQFLSADKVVIANPMWNLNVPTRLKAWVDTI NVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGKDFASQYIKAILNFIGVEQVDGLFI EGIDHFPDRAEELLNTAMTKATEYGKTF >gi|284795498|gb|ADDQ01000051.1| GENE 101 94049 - 94891 918 280 aa, chain + ## HITS:1 COG:lin2530 KEGG:ns NR:ns ## COG: lin2530 COG3711 # Protein_GI_number: 16801592 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Listeria innocua # 1 274 1 274 285 246 45.0 5e-65 MRIEKVLNNNVVLSRNEQGEEIVYMGRGLAFQKKIGDTINPDYVEKEFVLKDSAMAGQFQ QLFEDVPTKEVEVVKQIVDLAETTLAIELSSNIYLTLTDHIHYALLRAKEGIDIPNPLVF ETRKFYPKEFEIAKQALAIIAEKLGVQFSENEAGFIAFHIVNAEQGNGNMEVTMEATKMV RDILTIISRYFGQVFDEDSLNYQRIVTHLQYFAQRYLKQEAHDEEDEFLFALVQGKYPKA FQAVQRINEYLLKSYDRPIDQAEMIYLTIHIQRVVNDKKA >gi|284795498|gb|ADDQ01000051.1| GENE 102 95054 - 96934 2162 626 aa, chain + ## HITS:1 COG:BH0296_2 KEGG:ns NR:ns ## COG: BH0296_2 COG1263 # Protein_GI_number: 15612859 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Bacillus halodurans # 100 455 2 355 368 292 46.0 1e-78 MSKNQEIAARVLKAVGGEGNVNSVVHCATRLRFKLKDENKADTAALNADPDVIQVVQSAG QYQVVIGSHVSDVYKDLMANSGLGNDSDNREKESGGNIFNRLIDIISSIFTPFLGAMAGA GVLKGFLTLAVTMGWLADTSGVYLVLFSIADGLFTFLPIMLAFTAAKKFNTNPFLAVALA MALVHPSITALAGKTISFAGLPVIIGPSGYTSSVLPIILAVFAQSYVERFFKKVIPSFLQ IICVPLAVFLIMAPVTFLAIGPIGTVIGDWLGQGYNAIYAFSPIIAGLLMGSLWQVLVMF GMHWGFVPIMMLNLTQGGDTMVPMLLPAVIAQGGAALAVFFLTKNVKLKGLALSSSITTI FGITEPTVYGVTLPLKKPFIAACIGGGIGGAFVAMNHVKNFTFGLVSMLSLPGFIPAETK DTAPMITGAIGAGIAFIIAFVLTFVLRFEDQPNPETATEKTETDKMVAPVKTNQEDKIIL ASPLQGEILPLEKVQDPVFASGALGKGVAIEPTEGKLYAPADGEITTLFPTGHAVGLTTT EGVELLMHIGMDTVELDGKGFELSVKQGDSVKKGDLLVTFDIAVIKEAGYPVVTPIVVTN TNDYLDVLDMNQTDVLHGEDFLAIIK >gi|284795498|gb|ADDQ01000051.1| GENE 103 96959 - 98404 1712 481 aa, chain + ## HITS:1 COG:L89194 KEGG:ns NR:ns ## COG: L89194 COG2723 # Protein_GI_number: 15673441 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Lactococcus lactis # 7 480 3 478 478 677 70.0 0 MTTTTKFPKGFLWGGATAANQLEGAYLADGKGLSVADAMPGGKQRFAILGDEAFDWTIDE TKYRYPNHTGIDHYDRFKEDIALFAKMGFKCYRFSIAWSRIFPQGDETQPNEAGLKFYDA VIDECLSYNIEPVITISHYEMPLHLAKEYGGWKNRQLVDFYERFAETVLTRYHQKVNYWM TFNEINSAFHFPALSQGLVKSNGANDYQNIFQAWHNQFVASSKAVKIGHELNPELQIGCM IIYATTYGIDSNPVNQVATMIENQEFNYYCTDVQVRGEYPAYAERIYQKYAVKDLVIEEG DLELLKEYPVDYIGFSYYMSTAVDVTGTTNDTADGNLLGGVKNPFLEASEWGWQIDPEGL RIALNELYNRYQKPLFIVENGLGAIDKVDENFYVADDYRIDYLRRHIEAMAEAVADGVDL MGYTPWGCIDLVSASTGEMSKRYGFIYVDLDDEGNGTKNRYEKKSFNWYKQVIETNGQNL D >gi|284795498|gb|ADDQ01000051.1| GENE 104 98586 - 99155 637 189 aa, chain + ## HITS:1 COG:SA1052 KEGG:ns NR:ns ## COG: SA1052 COG0194 # Protein_GI_number: 15926792 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Staphylococcus aureus N315 # 9 157 8 162 207 82 35.0 4e-16 MIKQLQHPFFVIMGPSGSGKTAITSKVFPKNYKVISHTTRKKRLDEVDGVDYYFETKASF QTLIETNQLVEYDFYHGNYYGVGVTAIVETTKEHPAYNALTFPGFQAVFERFGESVIPVF FDVSKENIYQRLKQRESDPKIIEERLNLYDQEILIKNQLEQYPNYQRIDANGPIKEVAGL LQECIKHYY >gi|284795498|gb|ADDQ01000051.1| GENE 105 99303 - 99980 728 225 aa, chain + ## HITS:1 COG:L53789 KEGG:ns NR:ns ## COG: L53789 COG1309 # Protein_GI_number: 15672643 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 123 1 121 189 75 36.0 1e-13 MPTNTFFHLPEEKQQRLLDAAQIEFSRHSLQEASIANIVKLAGIPRGSFYQYFENKEDLY FYYFATLRKNSERDLEKQIIAENGDLIEAMDVYFSKMIVEVLTGENASFYRNLFVNMDYR VSRRVTDNLATGEEEKNRKQHCHKHRGRKGHAAYAEHLYQIIDRSKLTIETPKEFTWFMQ TAMHAVFSTIVDGYRQQRENTAYDSTEAVKQLKMKLSWLKNGAYK >gi|284795498|gb|ADDQ01000051.1| GENE 106 100001 - 101728 185 575 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 332 559 2 231 245 75 25 1e-12 MIKLVKRMSLWSVFAAVLFMIVQIIADLYLPTLTSNIINDGVAKGDINYIWSTGVVMLGF SLISIVASIGNTFFATKESQSLGKKLRTDIYRKVENFSNNEFDKFGTASLITRTTNDVNQ IQMVMQMFLRLMINAPLTLIGASFMAYNKDPQLTKIFLYVLPIMAVLVGGIMFLAVPLFK SMQKKTDRLNLVFREGLTGVRVIRAFGKANYEEQRFDEANKDYTQTAIKVNTIVALMIPL MTLIMSGTNIAITWFGGHYIAEMQLEVGNLIAFMTYAMQILMSFMMLSMIFVMVPRAQAS ADRINEVLNTDSEIKDVPNPELLSLKGDEATLAFEHVNYRYQHAENLALEDIDFSAKSGE TVAIIGGTGSGKTTLVNLLPRFYDVESGKILLNGKNIKDTSQHNLREMIGFVPQKAVLFT GTIRENMQYGAPNATDEEIWQALEIAQAKAFVSELAEGLDSHVEQGGGNFSGGQRQRLAI ARALVKPADVYVFDDSFSALDFKTDANLRKALKEQMTDAIVVLVAQRVSTVMEASTILVL DEGKLVGKGTHEELLANNQTYQEIVHSQLREEDLA >gi|284795498|gb|ADDQ01000051.1| GENE 107 101725 - 103593 171 622 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 397 605 28 233 312 70 26 5e-11 MSSRPKGGPMGGGPGRNIGAKGPKPKNFWKTVKRLFRYMSKRMLSIIAVLVLAIAAVVFQ IQTPKVLGQATTEIFKGVMKGTAEMKQGLKITSFPIDFDKIGQILLIVIAMYLISAVFNF LQQVIMTRVSQRTVYELRQELEAKMNKVPISYYDTHSNGDIMSRAINDMDNIASTLQQNL TQLITSIVTFVGVLWMMLTISWQLTLIALATVPLSLIVVMVVAPRSQKHFAAQQKSLGLL NNQVEETYGGHVVVKSFNHEESDQEVFEKENEKLYHAGRKAQFISAIIMPLMNFIKNLGY VFVAVLGGVKVANGMMDLGDVQAFLQYTNQFSQPITQIANLMNTIQATVASAERVFEVLD EEEMVDEPSDVPVETDSPYRVSFEHVAFGYSPEKLLMKDFNLNVKPGEMVAIVGPTGAGK TTLINLLERFYDISSGSIKYDGVDTRDLSREELRAHFSMVLQDTWLFTGSIYDNIHYGND QASEEEVIRAAKAAHVDDFVRKLPEGYQTILNEEASNISQGQRQLITIARAFLANPDVLI LDEATSSVDTRTEILIQAAMNRLLENRTSFVVAHRLSTIRDADTIIVMAEGSIVETGTHD ELMAKNGFYADLYNSQFSEEVA >gi|284795498|gb|ADDQ01000051.1| GENE 108 103781 - 104626 961 281 aa, chain + ## HITS:1 COG:lin0649 KEGG:ns NR:ns ## COG: lin0649 COG2514 # Protein_GI_number: 16799724 # Func_class: R General function prediction only # Function: Predicted ring-cleavage extradiol dioxygenase # Organism: Listeria innocua # 1 249 2 255 279 72 22.0 8e-13 MEVTEKMTEFQLEKAATLKTIAIRAKKVGEMVDFYKKVMGFVLKSEENNLSIWGTREAGT QLLILEETRKAEDFHNEEKQMAYFSIKVPTEKEFLQIAQRVLEQDYPIDESFQIGTRQSM FITDLEGNQFEIFHDEATANSTSEKQPIVLKDLISEDLEPHQGLAAGSYLAHVQLKTNNQ KEIKAYYEEVLGLKRNEKDQFVLEDGKATIGFQKPETSEVDQLPDPHLGLDFFTIKLSDQ EHILAMEQQLTAKNQEFFIDQKKAIVTVFDPIGLEWWFVLK >gi|284795498|gb|ADDQ01000051.1| GENE 109 104756 - 105799 930 347 aa, chain + ## HITS:1 COG:L114054 KEGG:ns NR:ns ## COG: L114054 COG1680 # Protein_GI_number: 15674027 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Lactococcus lactis # 9 330 11 308 328 223 41.0 3e-58 MYEKTKWKIQKMMKKGVFSGASFCFIEGEKEESNCWGLAQIKPTKEQLTSAMLFDVASLT KVVGTTTVILQLVEEGKIILDQSLQTYYPSFQDPNITIRHLLTHTADLQGYIPNRDQLNA QELKDAYNHSFHAGTAIGKKVVYTDAGTILLGFMLEEMIQQSMIEILSERVLLPLGMNES TFLPKNPLNCVPTELHEQRGLIRGTTHDPKAFVLREHAGNAGLFSNVYDLTKFVRMYLNR GSYHNHQFLKKETIDLLLVNQVPAADKPRSLGWDFKYDVATQQPLLFHTGYTGTFLLIDV RQQSAFIFLSNRVHPEDHRNTYIEERDQLLATYLKEKSSVSDEMTSF >gi|284795498|gb|ADDQ01000051.1| GENE 110 105841 - 106812 1198 323 aa, chain + ## HITS:1 COG:L179409 KEGG:ns NR:ns ## COG: L179409 COG1482 # Protein_GI_number: 15672751 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannose isomerase # Organism: Lactococcus lactis # 1 321 1 315 315 407 63.0 1e-113 MQEPLFLQPVFQEKIWGGNRLHTLFGFDLPSDKIGEDWAISAHPHGVSTVLNGEFKGKKL DELWADHQELFGYAGGAVFPLLTKILDAADDLSVQVHPDDAYGQKHEGELGKTECWYIID AEPGAEIIYGHHAKTKEELAEMIEEGRWDDLLRKVPVKKGDFYYVPSGTIHAIGSGILIL ETQQSSDTTYRVYDYDRTDDQGKTRELHIQQSIDVTTVPAKDPDLSIQQENQGQSSIVTY VKTDFFNVYEWRVSGILKVKKQAPYTLATVIEGVGRLITEDATKADVATFDLKKGDSFIF PTDIPSWRFEGDLTIIASEPGSR >gi|284795498|gb|ADDQ01000051.1| GENE 111 106868 - 107413 409 181 aa, chain - ## HITS:1 COG:no KEGG:EF2588 NR:ns ## KEGG: EF2588 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 181 1 181 181 252 100.0 4e-66 MKKITPRIITIIAFSVALNYLGSTIALLLRLPIYLDSAGTIFTGALLGPLFGALTGILTS LLTGLTTDIFSLYYSPVQLCTGILAGLLLHQQLKVTKLPFKTLWLTIPGTVISSLITVCL FGGITSAGSSIIVQFLYGLGFNQLASVLLVQLITDYGDRLLSVIIVTAVIAALPKRSFIT K >gi|284795498|gb|ADDQ01000051.1| GENE 112 107416 - 108390 803 324 aa, chain - ## HITS:1 COG:PA0143 KEGG:ns NR:ns ## COG: PA0143 COG1957 # Protein_GI_number: 15595341 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Pseudomonas aeruginosa # 2 299 19 318 329 191 38.0 2e-48 MQKVIIDCDPGIDDTLALLYALASPELDVQAITVVCGNVPVEIGVENVFKCLEKVNRLDI PVYQGAASPLKRPFVSAQDTHGMDGLGETYFPRTSKIQAQALSAADYLAQAFQQATDCSI IALGPLTNIALALKKEPLLGRNLQRFVSMGGTFKSHGNCSPVAEFNYWCDPDAAAWVFEE LGAKIEMVGLDVTREIVFTPTILNYCQRLNPKMGNYLAEITQFYFDFHWKYERILGCVIN DPLAVAYFIDPTLCQGFSSYGQIVPDGIAMGQSMIDQYHLQQQPANCHVLTTVDSQQFFV KFLSILLNVQIDEIERDFKNLRMG >gi|284795498|gb|ADDQ01000051.1| GENE 113 108627 - 109316 918 229 aa, chain - ## HITS:1 COG:SP1590 KEGG:ns NR:ns ## COG: SP1590 COG3442 # Protein_GI_number: 15901432 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferase # Organism: Streptococcus pneumoniae TIGR4 # 4 224 16 236 260 285 63.0 7e-77 MSKELVVCHLYGNLLNTYGDNGNLLMLKYLTEKMGVTFRSEIISIYEPFDPEKYDLVFVG GGQDFEQFIISEDIQNKKEALTSYIENDGVLLAICGGYQLLGHYYVGAQGEKIKGIGALD HYTLSQDNNRFIGDIEIYNEEFDETYYGFENHNGMTFLGEGERPLGTVKQGKGNNGQDNG EGVVYKNVFGSYFHGPILARNKNLGIRLIRTALEKKYGEPIAIPETLYK >gi|284795498|gb|ADDQ01000051.1| GENE 114 109309 - 110661 1604 450 aa, chain - ## HITS:1 COG:L114717 KEGG:ns NR:ns ## COG: L114717 COG0769 # Protein_GI_number: 15673088 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Lactococcus lactis # 1 445 1 445 449 572 62.0 1e-163 MGIRSHLAIAAGKTSQWVLQTFFKGGSSYPGKLALKIDPKILDTLAKDYEIVVVTGTNGK TLTTALTVNILRQEFDEVLTNPTGANMEQGIVSTFLNAKAKKGQKKFAVLEIDEASLSRV TKYIQPKLFVFTNIFRDQMDRYGEIYTTYRLIMEGAAAAPEATILCNGDSPIFNSKETVN PRKYYGFNHLPPKEQLAHYNTDGVLCPKCNHILHYKMITYANLGDYYCPNCGFKRPELDV QLTEMVRMDNTSADFVIDGEEYGIAVGGMYNVYNALAATAVAEYYQVAPDKIRAGLAYDE KVFGRQETIKVGDKECTLVLVKNPVGLNQVIDMMGLAPYSFSLVSLLNANYADGIDVSWI WDGNHEAFADMDIPKVIAGGDRHEDMALRLKVAGIPEEKLLEIPDLEQVISEIKTLPTDH VYILATYTAVLQLRKSLTAQGYIQGGMNGV >gi|284795498|gb|ADDQ01000051.1| GENE 115 110867 - 111505 626 212 aa, chain - ## HITS:1 COG:VC0355 KEGG:ns NR:ns ## COG: VC0355 COG2964 # Protein_GI_number: 15640382 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Vibrio cholerae # 13 209 37 230 240 80 29.0 3e-15 MLSDEKLTFLTQIAKGLAGQFGENCEVVIHQINEDNINNSIVSIENGHVSSRHLGDGPSQ VVLEALKKDPSELNDHINYLTRTHDGRILKSSTMYFKDENGQLDGIFAINYDITTLIAAE SNLKSLISTAESEEDKDPDYIPQDVNELLDDLIHESVKLVGKPVPLMTKDDKIKCIQFLN NKGAFLVTKSGDKVSNFFNISKYTLYSYIDAK >gi|284795498|gb|ADDQ01000051.1| GENE 116 111918 - 113252 1571 444 aa, chain + ## HITS:1 COG:ssnA KEGG:ns NR:ns ## COG: ssnA COG0402 # Protein_GI_number: 16130781 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Escherichia coli K12 # 24 443 45 461 464 247 34.0 4e-65 MLLIGNGRLITRDAQNHFFENGCVAIDGQVVKQVGTTEDLKQAYPEATFIDAKGGVIMPG FINMHNHIYSTFARGLSLTNYHPKNFMDILVDQWWRIDRALTLEDTYQSGKVAYLDSIRN GVTTVFDHHASYGEITGSLTQLSNAADELGIRTCLCYEVSDRDGEQKMREAVQENAAFIK ASSLRNDDMQKAMMGMHAAFTLSDASLELCAANTPDGIGYHIHIAEDLADVHDSLKKYGK PIVNRLFDLGILGKQTMAGHCIHIGPHEMELLRDTDTMVVTNPESNMGNAVGCPPAMRMF NEYGILMGLGTDGYTNDVTESYKVGNVIHKHHLAEPNAAWAEIPTMLFDNNPQMANRYFK TKLGVLEPDAAADVIIVDYHGPTPMTKENYNMHILFGMNGGMVTDTVINGEIRMRNREVQ GIDEEKVWHDAQTQAQSFWKRVNQ >gi|284795498|gb|ADDQ01000051.1| GENE 117 113283 - 116288 2975 1001 aa, chain + ## HITS:1 COG:ygfK_2 KEGG:ns NR:ns ## COG: ygfK_2 COG0493 # Protein_GI_number: 16130780 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Escherichia coli K12 # 439 954 1 530 582 390 42.0 1e-108 MSDIMHPISIDALLNWIFSEYQQDGTIFGIRKFYHADPTKTISLFGEKMETPCGPAAGPH TQLAQNIIAAYLTGSRFFEVKTVQILDGEDLPVSKPCIAAADECYNVEWSTELRVPQAYD EYVKAWFVLKLLSKEFELGDPNGFIFNMSVGYDLAGIQSPKIDRYINEMQNAEGTPIWAE CQAAAKKYLSSFKKVDDLYIEAISPKVCHSITLSTLHGCPSDEIERIAAYLLSEKGLHSF IKCNPTMLGYEYARQTMDELGFDYMVFDDHHFKEDLQFEEAVPMLQRLQLLANSKNLSFG VKITNTFPVTIAANELPGDEMYMSGRSLFPLSISLAQKLSEAFDGKLQISYSGGADIFNS KEIFDAGIWPITMATTLLKPGGYQRMNQVANVLGAAEYPQMVHVNLDKLAQVVEKAKTQA RYQKSIKLPESTKLRKTVPLTDCYIAPCRSDGGCPINQDIPAYLRYVSEGNYLKALQVIV DKNPLPFITGTICAHPCMTKCTRQFYEESIHIREVKLEAAEHAYDELLTTLEKPQPKENA PKTAVVGGGPAGISAGYLLAREGMPVTVFEKSETIGGVCSQIVPEFRISMESVQKDVQLA EFMGAEFRTGQEAPSLAELKNQGYTNVIYAIGAWKHGVLRLESGRALNSLEFLKANRENP TLNPYGEQIVVVGGGNTAMDCARAATTLLGVKKVSVVYRRNKRNMPADEEELYLALEDGV DFLELLSPIKHENQQLTCEKMVLGERDASGRRRPVGTGEMIDISADTVIAAVGEKVDTEF YQSLGIHTDNYGKVVSNQETLETNIPGVYVIGDANLGPATIVEAIADATKAANNICLVHN HHYEKDNLNSDVAFVRNKRGILVTDEMSCSQASRCLECSTICESCMDVCPNRANIVVYVE GKPQIVHVDRMCNECGNCETFCPYASAPYKDKFTLFNSEADFYDSTNSGFYVQNPVDKIC LLRLWGTVSTIQLTDQGLDVPEDLIALMVTMIEEYAYCMQA >gi|284795498|gb|ADDQ01000051.1| GENE 118 116318 - 117691 1146 457 aa, chain + ## HITS:1 COG:SMc01821 KEGG:ns NR:ns ## COG: SMc01821 COG0044 # Protein_GI_number: 15966207 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Sinorhizobium meliloti # 1 454 1 452 484 352 41.0 1e-96 MSILLKGGTVVSAYNRRQLDIRIDGEQIVEMGANLPVENSQIEDVTGCYVLPGFIDAHTH LELNNGKGSLSTADNFTTGSQAAVAKGTTTVIDMATPNKGGSLKDCLATWNQLAEGKSSC DYTYHMSMIEWNPTIAAEIQEMIAAGITSFKMYMAYDNLRTTDAEIFEAMKEIKKVNGML GVHCENGDLVDELIQSYVSQGKLAPHYHPLSRPAAVEAEAVARYLMIAEMADLPVNIVHL STKRSLEAVERARQRGQSVYVETCPQYLLLDDHLYDAPNFEAAKYVCSPPLRKREDQQAL WQGIKEGAINTISTDHCSFNFHGQKTVGKDDFSKIPNGMPGVETRPELIYTEGVAKGRIT LEKMVALLSENIAKQFSMYPQKGVVQEGSDADLVVWDPRTTGVIAARTQLQNVDYTPYEG FETQGQARMVYLRGQKVAEAGQVILANQGKFVFRKAT >gi|284795498|gb|ADDQ01000051.1| GENE 119 117715 - 118908 1288 397 aa, chain + ## HITS:1 COG:STM1002 KEGG:ns NR:ns ## COG: STM1002 COG1171 # Protein_GI_number: 16764362 # Func_class: E Amino acid transport and metabolism # Function: Threonine dehydratase # Organism: Salmonella typhimurium LT2 # 19 396 22 399 404 409 51.0 1e-114 MEKIKWTANEMPKTEDKYLPLMSKEKIEKALAFHKSFPQYSETPLAELNHMAAYLELNDF FVKDESYRFGLNAFKVLGGSFAMANYIAEKLKKDVSELTYDELTSDQLRSAFGQATFFTA TDGNHGRGVAWAANKLGQKSVVLMPKGSTQTRKENIEKEGATVTIEEVNYDECVRMANKM AEETENGVMVQDTAWDGYEKIPTWIMQGYGTMALEASQQLRKFGSERPSHVFVQAGVGSL AGAVIGYFANTFPEKPPIMVVVEAQAADCLYQSAIKKDGEIRFVDGDLQTIMAGLACGEP NTISFDILKNHTSFFVSAPDWVSEKGMRMLGAPLKGDPQVVSGESGAVAMGLVATVMQDP DYQELREALQLDETSNVLMFSTEGDTDPDNYKKILWR >gi|284795498|gb|ADDQ01000051.1| GENE 120 118914 - 120224 1578 436 aa, chain + ## HITS:1 COG:ECs3745 KEGG:ns NR:ns ## COG: ECs3745 COG0624 # Protein_GI_number: 15832999 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Escherichia coli O157:H7 # 3 431 7 396 403 523 59.0 1e-148 MDFNAVNAAAEGYREDMVKFLRDLVKIPGESAEEGNKIARAKAEMEKLGFDKIDIDPQGN LLGYMGSGEKLIAFDGHMDTVGIGEMSNWKFDPYDGYETETEIGGRGTSDQEGGIVSAIY GAKIMKDLGLLSEKYTALVTVTVQEEDCDGLCWQYIIKEDGIRPEFVVSTEPTDGGIYRG QRGRMEIKVDVKGVSCHGSAPERGDNAIYKMADILQDVRALNNNGDTESTAIRGLVRMLD PKYNPEWQEARFLGRGTVTVSQIFHSSPSRCAVADGCTVSLDRRMTAGETWESCLEEIRN LPAVKKYGDDVTVSMYNYNRPSYTDLTYEIECYFPTWVIPENHDVTKALMETHKNLYGET RKGSVETVEMREERPLLDKWTFSTNGVSIMGRNGIPCIGFGPGAEAQAHAPNEKTWKDDL VRCAAVYAALPTVYCG >gi|284795498|gb|ADDQ01000051.1| GENE 121 120263 - 121456 1517 397 aa, chain + ## HITS:1 COG:ECs3743 KEGG:ns NR:ns ## COG: ECs3743 COG0078 # Protein_GI_number: 15832997 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Escherichia coli O157:H7 # 1 394 2 394 396 543 66.0 1e-154 METFKEYIEKLDKLEFEKMYENDFFLTWEKTRDELEAVFTVADTLRYLRENNISTKIFDS GLGISLFRDNSTRTRFSFASACNLLGLEVQDLDEGKSQISHGETVRETANMISFMADIIG IRDDMYIGKGNAYMHEVSESVQEGYKDGVLEQRPTLVNLQCDIDHPTQAMADALHLIHEF GGIENLKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVVLAHPEGYEIMPEVEEVA KKNAAEFGGNFTKTNSMAEAFKDADVVYPKSWAPFAAMEKRTELYGNGDQAGIDQLEQEL LSQNKKHKDWECTEELMKTTKDGKALYMHCLPADITGVSCEEGEVEASVFDRYRVELYKE ASYKPYVIAAMIFLSKVKNPQKTLTDLADKATPREVK >gi|284795498|gb|ADDQ01000051.1| GENE 122 121697 - 122641 1169 314 aa, chain + ## HITS:1 COG:yqeA KEGG:ns NR:ns ## COG: yqeA COG0549 # Protein_GI_number: 16130776 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Escherichia coli K12 # 1 309 1 308 310 357 63.0 2e-98 MGKRVVVALGGNALGNNLTEQMTAVKQTSKAIADLIEAGYEVILSHGNGPQVGMIQLAME EFSFNNPQYPVVPLSMCVAMSQSYIGYDLENALQEELRQRNISKAVTTIVTQVVVDENDP AFKKPTKPIGRFMTKEEAEQLVKEKNIQVMEDAGRGYRQVVASPKPKNIVELLTIQTLVD AGQTVIAGGGGGIPVIQEGNRLKGVNAVIDKDFCSERLAEQVDADLLVILTAVEKVCINF GKENQESLGNISTEKMKQYAQEGQFAPGSMLPKVEAAIKFAESKPGRKTLITLLEKAKEG LSGKTGTLIENKES >gi|284795498|gb|ADDQ01000051.1| GENE 123 122656 - 123036 456 126 aa, chain + ## HITS:1 COG:slr0709 KEGG:ns NR:ns ## COG: slr0709 COG0251 # Protein_GI_number: 16331956 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Synechocystis # 1 124 1 127 130 134 55.0 5e-32 MTNKMINSAQAPAAVGPYSHSVLAGNTLYISGQLGLDPQSGEMKATVEEQAKQAFINLGS ILKEVEMTYDNVVKTTVFLQHMSDFSKINEIYGNYFSEVLPARSCVEVAKLPKDGLFEIE AVAVKG >gi|284795498|gb|ADDQ01000051.1| GENE 124 123130 - 124449 404 439 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 11 439 6 427 447 160 28 4e-38 MNEKKEQALFEYDAKLSISEAIPMGLQHVVAAVVGIVTPGIMIAKVCQLSPSDTTILIQT SLIFSAVATLIQLFPIFGKVGSRLPVMMGASFAYVPILMAIGADFGIAAIFGSQLVGSIL VIIVGLFIKKIRVLFPPLVTGTVILSIGLSLFPVAIKYMAGGAGSADFGSARNWLVALLT FAIVFYFNYFAKGFLKLSAILNGMVIGYLISLALGMVSFEPVQNAKIVQVITPFHFGLDF QLVPIFTLVVMFIVDAVQAIGQFTATTVGAMDRDATDEELSGGIMGSGFTNFIGSLFGSI PVATFGQNVGLVTVTKVINKYVLVFASVILLIAGFVPKVAALLTTIPYAVIGGATISVFA SISMTGIRMIASQEMTPRNTGVVGTALAFGIGVTLSTGSLAGFPTWVTTIFGNSEVILTT LVAVLLNVILKPKKRVALE >gi|284795498|gb|ADDQ01000051.1| GENE 125 124543 - 124902 312 119 aa, chain + ## HITS:1 COG:AGc4647 KEGG:ns NR:ns ## COG: AGc4647 COG2005 # Protein_GI_number: 15889822 # Func_class: R General function prediction only # Function: N-terminal domain of molybdenum-binding protein # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 17 107 22 109 131 61 37.0 3e-10 MFTYSLNLKLKTDRNFFGPGVVEVLQKIQQTGSLNLAAKEMKMSYNKAWRIVRVAEEELS FPLIIKSVGGCNGGGSIVTDQGKELIDQYLLFEKKVYQQVEACFEEIFKEQDVVSEELK >gi|284795498|gb|ADDQ01000051.1| GENE 126 124899 - 125906 850 335 aa, chain + ## HITS:1 COG:CC2617 KEGG:ns NR:ns ## COG: CC2617 COG1975 # Protein_GI_number: 16126854 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family # Organism: Caulobacter vibrioides # 17 333 18 323 338 100 27.0 3e-21 MREVFQRLKQAILEKQDTMLLTIGTSSGSTPRSQGARMLVSAEGRIAGTVGGGAVEFQAE QVAKKLLIEKENVQRQFILAPNNIADLGMVCGGNVTIFFHYLSWETPFLKELCESIETHF QNNQQGWLMTELDQNNLGKVSFYSETGELIGSTSWEGELSLLPKGIHCEQKEDIIFLTEA ILQVGKVYIFGSGHVARALVPILNYLSFYCVVVDDRPEFLTAQAFPQAEELRVIPLENLA AFIEITADDYGIVITRGHNFDFIVAKQLLETPAKYIGVMGSKHKIASQVRRLKEVGYTMN EIERIFMPIGLDIAAETPEELAISIAGELIQQRYQ >gi|284795498|gb|ADDQ01000051.1| GENE 127 126027 - 126740 551 237 aa, chain + ## HITS:1 COG:SSO2637 KEGG:ns NR:ns ## COG: SSO2637 COG2080 # Protein_GI_number: 15899363 # Func_class: C Energy production and conversion # Function: Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs # Organism: Sulfolobus solfataricus # 19 146 31 159 163 135 51.0 8e-32 MYSIIVNGQSETCETNKKLMDFLREDLGLTGTKDGCNQGSCGACTVLVNGKASKACLFTL EKLAGKEVTTIEGLSQRQKDVYAYAFAKTGAVQCGYCIPGMVISAQGLLNKKPEPTKEDI QKALRGNICRCTGYVKIIEAIQLAAKMFCEETSIPEEHSNGKLGEDFQRVDAVEKTLGTG IYVDDIDIEGMLHASALRSTYPRAKVLSIDSTQALAHPDCVAVSQLKTFQEIIKLVI >gi|284795498|gb|ADDQ01000051.1| GENE 128 126764 - 128599 1806 611 aa, chain + ## HITS:1 COG:BH0748 KEGG:ns NR:ns ## COG: BH0748 COG1529 # Protein_GI_number: 15613311 # Func_class: C Energy production and conversion # Function: Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs # Organism: Bacillus halodurans # 6 602 94 741 760 290 32.0 4e-78 MIPEGEITRYVGDAVALVVSKRKETLPEIKNLVEVDYEEMIPLTSCEAALAEGAPAIHEK GNILSHEHLVRGNADEVLANSAFVVTEHYSVPINEHAFMEPECAIAQPEGEGILLFSAGQ SIYDEQREVARMLGLDKEKIHVQSKLVGGGFGGKEDMSVQHHASLAAWLLKKPVKVLLSR EESLMVHPKRHGMEMDFTTGCDEEGNLTAMKAVIYADTGAYASLGGPVLQRACTHAAGPY KYQTIDVEGFAVYTNNPPAGAFRGFGVCQTAFAIESNLNLLAEKVGLSPWEIRFKNAVAP GDTLPNGQLVSKNAALKEALLAVKDVYEQAEVAGISSFFKNSGVGVGLPDTGRCIISVEE GKIHVRTSAACIGQGMATVTTQIACETLNLPPEMIVAEAPDTRRTPNSGTTTASRQSLFT GEATRRAAMQLRYELDMGRALSDLEGEEFYGEYSAKTDPLINDKKSPVSHAGYGYAAEVA ILDDKGKVAKFVAAYDMGQVVNPRAAEGQIEGGIAMGMGYALTEKFALEEGYVKAKYATL GLVNATQVPPIETILIHADNLHEGLAYGIKGVGELATIPTAPALAGAYFALDGQLRPSLP LENTPYQKKKR >gi|284795498|gb|ADDQ01000051.1| GENE 129 128613 - 129194 762 193 aa, chain + ## HITS:1 COG:APE2223 KEGG:ns NR:ns ## COG: APE2223 COG2068 # Protein_GI_number: 14601923 # Func_class: R General function prediction only # Function: Uncharacterized MobA-related protein # Organism: Aeropyrum pernix # 8 186 1 189 205 85 32.0 7e-17 MSLVSVIILASGNSQRMGQNKLFLKYQGKTFLEHTLTLVNQLDVLERILVVSPENQPAFP LPKNIQLILNHQWQEGQSSSIRLGTEQARGAGYLYLPSDQPLLTPKMLQPVLDKCQRNKI VVPLQKDGCPSSPVLFGNQFRQELLTLTGEKGGRMIYERFPEAVQMLRIATPGRLKDIDT PEEYRKLIQETNS >gi|284795498|gb|ADDQ01000051.1| GENE 130 129208 - 130356 1153 382 aa, chain + ## HITS:1 COG:BH4056 KEGG:ns NR:ns ## COG: BH4056 COG0520 # Protein_GI_number: 15616618 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Bacillus halodurans # 4 380 1 377 383 237 39.0 3e-62 MKDLVYLNYAATSYKKFPATIEALTAYLAENQFMNYGRNAPLLREGLPLLETRQLLADFF QAPSAAQITFTNNATTSLNLALAGILQPGDHVITTMLEHHAVARPLHLLEKERGISVTYV ACQKTGLLDVEDIQRAWRTNTKALVMTHASNVLGTILPIEKCFQWAQQKGLLTVLDAAQT AGFLPIKMTQMAIDVLAFTGHKSLYGLAGIGGLAFSERGAEAVKPLMAGGTGSHSNSFDQ PSFLPDKFEAGTLNSLGILSLNSSIKELNKIGLAAIQKHERTLMQNFLNGLSGLPVTILG TKDVAQTVPVVSITLWNQEETIVAQQLAEQYGIMTRAGLHCAPLAHQTAGTLATGTLRFS FGWQTTPEEITWTIHALQELLI >gi|284795498|gb|ADDQ01000051.1| GENE 131 130372 - 130623 141 83 aa, chain + ## HITS:1 COG:no KEGG:EF2567 NR:ns ## KEGG: EF2567 # Name: selD # Def: selenide, water dikinase # Organism: E.faecalis # Pathway: Selenoamino acid metabolism [PATH:efa00450]; Metabolic pathways [PATH:efa01100] # 1 65 1 65 340 137 100.0 9e-32 MDFLSQCTSGGCGAKIESRVLNQLLQHLPETPANERLLVGFEHADDAAVYQITSEKALIS TVDFFHQWSMIRYHLEKLRSLML >gi|284795498|gb|ADDQ01000051.1| GENE 132 130572 - 131393 827 273 aa, chain + ## HITS:1 COG:Cj1504c KEGG:ns NR:ns ## COG: Cj1504c COG0709 # Protein_GI_number: 15792818 # Func_class: E Amino acid transport and metabolism # Function: Selenophosphate synthase # Organism: Campylobacter jejuni # 1 272 38 307 308 181 40.0 1e-45 MVNDPLSFGKIAVANALSDVYAMGGTVLYALNLVCFPQKMSKEWLEQMLLGGSLKLKEAG ALLAGGHSIYDHEPKYGLAVTGEVHPENLWHNNTPQVGDVLILTKALGVGIIQAAVRGQL AKQTEQKIAQDSMERLNKYAAANARSYAVHACTDVTGFGLLIHAKEMADNQVTLLIDTEA LPTITGALAYAAECLVTAAGQRNRQTIGTTIDYSKISMEMQELLFDPQTSGGLLISVAAD EAAACLAAIQKEDPVAKIIGEVLPKEQQAVVLL >gi|284795498|gb|ADDQ01000051.1| GENE 133 131409 - 131996 757 195 aa, chain + ## HITS:1 COG:no KEGG:EF2566 NR:ns ## KEGG: EF2566 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 195 1 195 195 323 100.0 2e-87 MKLVDALGKPCPIPVIETKKALAELGLAGGTIEVLVDNEVAIENLKKLATKKQATLTAKQ IEATVFSVKITVPEEATQQTSQSATDLVITIGSDQLGTGDEQLGRLLMKSYLQSLSEAET VPTQLLFFNRGAFLTNQAANTLADLQQLAEKGTTIQTCGACLDFYHLTDTLAIGSITNMY EIVETMNQAAKVITL >gi|284795498|gb|ADDQ01000051.1| GENE 134 132016 - 132273 176 85 aa, chain + ## HITS:1 COG:no KEGG:EF2565 NR:ns ## KEGG: EF2565 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 85 1 85 85 172 98.0 3e-42 MEYLLTFPNTHYAVQAEQVLLTRKVAVRVFTLPPSLTDGCGIGLLINEAEITHSVCFLEE AKVRVASIFSVKNDLGERRYQLWSP >gi|284795498|gb|ADDQ01000051.1| GENE 135 132261 - 133016 504 251 aa, chain + ## HITS:1 COG:no KEGG:EF2564 NR:ns ## KEGG: EF2564 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 251 1 251 251 474 97.0 1e-132 MESLKKCFDLQGKEIVSIVGSGGKTSLMWALAKTYRKEAVLVSTTTKIGFPQRQLYDYFY TNHFEKITPNICGITLAGTAINNQTKLTMPAMTSLQILFQHFTKVFLEADGSKQRPLKGW SSYEPVILKETTTTIGVLPISVIGQKIDETTIHRLPLFLELTDAQQQEPITETLLAQLIA NPKGLFKESQGKRILCLNQTHTRREFVQAMNVCLQLPKSCFEKLDKIIACNMELEKGLIL WEKSVKTSKKN >gi|284795498|gb|ADDQ01000051.1| GENE 136 132980 - 133810 855 276 aa, chain + ## HITS:1 COG:yqeB KEGG:ns NR:ns ## COG: yqeB COG1975 # Protein_GI_number: 16130777 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family # Organism: Escherichia coli K12 # 11 269 269 526 541 235 46.0 8e-62 MGEISQNIQEKLVIVRGGGDLATGVIQKLWHVGFKILVLETECPLAIRRTVSVCDAIFQK EQRVEDLVAVRITSLKDCAKCWQQNKLPVFVDQTASAIQQLKPLIVIDAILAKKNLGTHR GMAPITIALGPGFSAPQDVDVVIETMRGHRLGRLYFEGTALPNTGIPGEIGGKSAERVVH APASGQVTHLKNIGDFVLKGEALFFIDQVPVYSPLTGTLRGLISEKVTCYQGLKCADVDP RPVEKVDCLTISDKARALGGAVLEAIFMIGRRKNVL >gi|284795498|gb|ADDQ01000051.1| GENE 137 134052 - 134510 606 152 aa, chain + ## HITS:1 COG:SPy0721 KEGG:ns NR:ns ## COG: SPy0721 COG0716 # Protein_GI_number: 15674777 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Streptococcus pyogenes M1 GAS # 1 149 1 148 149 126 50.0 1e-29 MALVKIVYASMTGNTEEISEILEEQFQEAGVEVEREECSEVDVDFFDDADACIIATYTYG DGELPFEFEDFFDELTEKDLAGKPFGVVGSGDREYGEFFCKSAHDFVGAFEKAGAKKVAE TVEIENNAEEEDIEMLKTFVKSVATTLSDSVA >gi|284795498|gb|ADDQ01000051.1| GENE 138 134566 - 135405 926 279 aa, chain + ## HITS:1 COG:TM1639 KEGG:ns NR:ns ## COG: TM1639 COG0543 # Protein_GI_number: 15644387 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases # Organism: Thermotoga maritima # 4 276 9 280 282 326 53.0 2e-89 MFNILQSTQLSSNTFDFWLEAPRIATHAQAGQFVILRIDEKGERIPLTIAETNPQAGSIR IIFQVIGKTTAALSQLKTSDSLLDVTGPLGMPTEVKQYGTVMVVGGGVGIAAIYPIIKAL KEAGNRVITILGARTAELVLLQEECRRYSDELIITTDDGSLGKKGLVTEAMEEVIARESV ACSWAIGPSIMMKFCTLTAEKHQLPIYVSLNPIMIDGTGMCGGCRVTVDGTMKFACVDGP EFKGNEVNWDEFINRMKQYQEEEAVCFTDRLKEQVEKNG >gi|284795498|gb|ADDQ01000051.1| GENE 139 135398 - 136816 1541 472 aa, chain + ## HITS:1 COG:TM1640 KEGG:ns NR:ns ## COG: TM1640 COG0493 # Protein_GI_number: 15644388 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Thermotoga maritima # 8 461 5 459 468 587 64.0 1e-167 MARKSRIKTPIAEQAPTIRKSNFEEVCLGYTLAEGQEEAVRCLQCKNAPCIAKCPVMIDI PGFILAIREGNMEQAADILSKYTNLPAICGRVCPQEKQCEQVCKLGKAKNFEPVAIGKLE RLVADWALENHMFPKKTAEPTKGKVAVVGSGPSGLTVAGDLAKLGYEVIIFEALHEAGGV LTYGIPEFRLPKKIVKQEIASIEALGVTIETNVVVGKTITMEEIMSEFDACYLSVGAGAP NFMGIPGTSLNGVYSSSEFLTRINLMHSYEFPEYDTPIKRAKNVVVIGGGNVAMDAARSA KRLGAENVNIVYRRSLEELPARIEEYHHSLEEGINYYWLTNPIAYLDDQQGNLAGVECVK MVLGEPDTSGRRRPEPVPDSTFTIPADAVIEAIGQGANRVLLSTYPEIELNQWGYIQADP KTGATSIPGVFAGGDIVTGAATVILAMGAGKIAANAIDQYVKTQKTTVTSNV >gi|284795498|gb|ADDQ01000051.1| GENE 140 136837 - 140370 3805 1177 aa, chain + ## HITS:1 COG:lin0824_1 KEGG:ns NR:ns ## COG: lin0824_1 COG0674 # Protein_GI_number: 16799898 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit # Organism: Listeria innocua # 2 411 4 411 414 601 70.0 1e-171 MKKTMDGNTAAAYISYAFTEVAAIYPITPSSTMAELVDEWAESGLKNIYGQKVQVIEMQS EAGAAGVVHGSLKTGALTTTYTASQGLLLMIPNMYKIAGELLPSVFHVAARAVTTSALSI FGDHGDVMATRQTGFCMLAESSVQEVMDLSAVAHLASLEGSLPFVNFFDGFRTSHELQKI EVIDYDDLKEMVNQEAVTRFRMGGMNPNHPTVSGTAQNPDIHFQQRETVNKNYEEIPKIV QKYMKKINNLRGTTYDLTDYYGVEDATEVIISMGSASPVIKQTVDYLNQQGRKVGFINIH LYRPFPTENLLEKLPATVEKVAVLDRTKESGAEGEPLLLDVQSALYQHENRPIVIGGRYG LGSKDVAPNQIKAIYDHLLLPFKELKQRFTVGIVDDVTYQSLPEEPTLDLTPDTTFQAKF WGFGSDGTVGANKQAIKIIGDHTDLYAQAYFSYDSKKSGGLTVSHLRFGNEPITSTYLIE QADFIACHNASYLHKYDLLKGLKDGGTFLLNTIWDQEKVHRLLPAKLKKYIGEHQIKFYI INAVELARKVGLGRRINTVMSTAFFEVTDILTKEQYLPLLKEEVKKTYGKKSMEIVEKNY QAIDATFESLQEIVVPEDWATIVLEPENQESEVPAFVTNILEPINRQEGDQLTVSDLIEN GMKGGAIPMGTAAYEKRGIALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAP AGFAMREMRGTDGLMYRIQVSLEDCTGCGLCVQACPVKDKAILMKPYETQKEQAMNWAFA MTLKQKANPVKKLSVKGSQFNQPLMEFSGACEGCGETPYIKLLTQLFGDRMMIANATGCS SIWGGSSPVTPYTTNECGQGPAWSNSLFEDNAEYGYGMYIANRTKRQHLASLVEESLAKN VGSDSLQALLKDWLEHMAEGEGTQQRATKLAAALSEEADEDPLLTKIYEQKDLLVKTSQW IVGGDGWAYDIGFSGIDHVLASGEDVNIFVMDNEVYANTGGQTSKATPASAIAKFSAGGK HTSKKDLGMMAITYGNVYVAQVALGANSMQTIKAIDEAERYPGPSIIIGYTPCINHGVKG GMVRTLDQAKEAVESGYWPLYRYNPELVKKGKDPMVIDYKKTDFDKMRDFLEKQTRYSAL HTIKENQEVVEHLLDKTKEDAIERSESYNKLATHMKK >gi|284795498|gb|ADDQ01000051.1| GENE 141 140406 - 141821 1150 471 aa, chain - ## HITS:1 COG:lin0992 KEGG:ns NR:ns ## COG: lin0992 COG0168 # Protein_GI_number: 16800061 # Func_class: P Inorganic ion transport and metabolism # Function: Trk-type K+ transport systems, membrane components # Organism: Listeria innocua # 23 471 6 445 445 331 45.0 2e-90 MNHTRLLWLAQRKSDRFIRKNFSSIQIIVAYYILMTVISYLLFCLPIFREPDSHVPFIDL FFLAISTVSVTGLTTVDINSVFNDRGIVLLEVLFQVGGLGIMMISTVFFILSKRRITLKQ RQLIMTDMNQPRLSGIVRLIRTTFLILIWFQVIFGSLFSIYFYISGYYTNWRDAIFYGFY QAISAVTNSGFDISGDSIIPFAHDYLFLLAIMFLIFIGGIGFPVLLEIHEWLHFKKKNFR KKKRGLPFRFSLFSKIALLAFIVLFIGGTILIYLLEKDHLFLTMNESGRWVSSMFYSMTT RNAGLQINDLGDFQITTLIIFSVLMFIGCSPSSVGGGVRTTTVAIIGLYLLAFLKSEDDI SVFSRKIDDDDVKKSIVVFMLSLIMCFFAVVFLSATENLPLISIIVEVASAFGTTGLSLG ITDDLTTVGKLMIALLMFIGRIGMLYTLMIFVPKETRDLGYEYPSEKIIIG >gi|284795498|gb|ADDQ01000051.1| GENE 142 142191 - 143708 2165 505 aa, chain + ## HITS:1 COG:lin0374 KEGG:ns NR:ns ## COG: lin0374 COG1053 # Protein_GI_number: 16799451 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Listeria innocua # 5 504 9 506 506 612 67.0 1e-175 MKKVLMGVLSLGLLLGAATGCTSDQEKAAGKTKASSEKTEATSGASANGYTDPSELKDSY DVVIVGSGGAGMTAALQAKEAGMNPVILEKMPVAGGNTIKSSSGMNASQTKFQEKEGIKD SNDKFFEETLKGGKGTNDQELLRYFVDHSAEAIDWLDTKGITLSNLTITGGMSEKRTHRP ADGSAIGGYLVDGLVRNVREEKIPLFVDADVTDLVEENGQIDGVKVKMKDDKEKTVKAKA VVVTTGGFGANEKLITQYKPELKNYVTTNQEGTTGDGIQMIQKVGGALVDMKEIQIHPTV QQSDAFLIGEAVRGEGAILASQKGERFVNELDTRDKVSAAINALPEKSAYLVFDQGVRDR AKAIDFYDQKGFVEKGETIEELAEKIGMPADTLKATIDTWNQDVNAKDDKQFGRTTGMEA DLSTAPYYAIKIAPGIHHTMGGVKINTKTEVLREDGTPIKGLYAAGELTGGLHGQNRIGG NAIADIIIYGRQAGTQSAEFASAQK >gi|284795498|gb|ADDQ01000051.1| GENE 143 143934 - 144518 520 194 aa, chain + ## HITS:1 COG:L184871 KEGG:ns NR:ns ## COG: L184871 COG1435 # Protein_GI_number: 15672575 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine kinase # Organism: Lactococcus lactis # 1 188 1 188 189 308 75.0 3e-84 MAQLFFKYGAMNSGKTIEILKVAHNYEEQDKPVVLMTSGLDTRDGVGKVSSRIGLRRDAI PIFEETNVFDLINDLSYKPFCVLVDECQFLNKHHVIEFARIVDELDIPVMAFGLKNDFRN ELFEGSKYLLLYADKLEELKTICWFCHKKATMNLHYIDGKPVYEGDQVQIGGNEAYYPVC RKHYFHPKTVNEEQ >gi|284795498|gb|ADDQ01000051.1| GENE 144 144530 - 145603 1337 357 aa, chain + ## HITS:1 COG:SPy1141 KEGG:ns NR:ns ## COG: SPy1141 COG0216 # Protein_GI_number: 15675118 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor A # Organism: Streptococcus pyogenes M1 GAS # 1 356 3 359 359 479 73.0 1e-135 MYDQLQSIEDRYEELGELLSDPAVISDTKRFMELSKEEANTRETVEVYRRYKQVVEGISD AEELLSENLDAEMAEMAKEELSDLKKEKEVLEDRIKILLLPKDPNDDKNIIMEIRGAAGG DEAALFAGDLFNMYQKYAEAQGWKAEVLEANVTGIGGYKEVIMMISGDNVFSKLKYESGA HRVQRVPSTESQGRIHTSTATVVVMPEAEEVEIELADKDIRVDIYHASGAGGQHVNKTAS AVRLTHLPTGIVVAMQDERSQLKNREKAMKVLRARVYDQIQQEAQSEYDANRKSAVGTGD RSERIRTYNFPQNRVTDHRIGLTIQKLDQILAGKLDEIIDALVLYDQTSKLEEMQNG >gi|284795498|gb|ADDQ01000051.1| GENE 145 145596 - 146429 240 277 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169796031|ref|YP_001713824.1| putative adenine-specific methylase [Acinetobacter baumannii AYE] # 49 249 74 296 334 97 30 5e-19 MAKRYFEVLNWASSFLEAQGKEGYAIHYVFLERKGWDKTQWLLHMQEEMPKEEEEQLKTD LAQLLTDYPAQYLLGQAEFYGHSFIVNEHTLIPRPETEELVERCLKANPDTPLTVVDVGT GTGAIAISLKLARPNWRVIAIDLSEEALTVAKQNAQVLGADIEFYHGNGLQPVASEKIDL LISNPPYISEQEWHLMDASVRTYEPKTALFAENNGLALYQQLIHESQTMLKADGKIYFEI GFQQGAALQELLSAAYPQKTIKIEKDLSGNDRLAIAE >gi|284795498|gb|ADDQ01000051.1| GENE 146 146473 - 147495 1300 340 aa, chain + ## HITS:1 COG:lin2685 KEGG:ns NR:ns ## COG: lin2685 COG0009 # Protein_GI_number: 16801746 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Listeria innocua # 13 336 20 341 345 302 47.0 8e-82 METKKLTKQEIAQAAAAIQAGELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLI VHVNNVEMVKKYVATLPEVATKLVSAFWPGPLTLIFNVPSDTFSKTVTGGLETVAFRMPD NQATLALIEQANVPLVGPSANTSGKPSPTSAEHVYHDLQGKIAAILDDGPTQIGVESTVL DLTAEDGVPVILRPGAITKEQLESIISQVKIDTHLISENAAPKAPGMKYKHYSPDAEVWI ISGQTAEWQAAIQQATEQQEKIGLFLSDEQAAQLDTENAFVYSYGAETVENATKELFAGL RALDEQGATTIFAQGFAETGLGTAYMNRLKKSANQKFFEK >gi|284795498|gb|ADDQ01000051.1| GENE 147 147571 - 148809 1544 412 aa, chain + ## HITS:1 COG:SP1024 KEGG:ns NR:ns ## COG: SP1024 COG0112 # Protein_GI_number: 15900895 # Func_class: E Amino acid transport and metabolism # Function: Glycine/serine hydroxymethyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 2 411 7 416 418 594 72.0 1e-170 MDYKTYDPDLWNAIAREEERQENNLELIASENVVSKAVMAAQGSILTNKYAEGYPGKRYY GGCEFIDIVENLAIDRAKELFGAKFANVQAHSGSQANTAAYLSLVEPGDTILGMDLSAGG HLTHGSPVNFSGKTYNFVSYGVDPSTEVIDYDVVRILAREHRPKLIVAGASAYSRTIDFK RFREIADEVDAKLMVDMAHIAGLVASGLHPNPVPYADIVTSTTHKTLRGPRGGLILTNSE ELAKKVNSSIFPGIQGGPLEHVIAGKAAAFKEALDPSFAEYSQQVIANAQAMTKVFNQAP EARLISGATDNHLLLIEVTGFGLNGKEAEAILDSVNITVNKNSIPFEQLSPFKTSGIRIG TPAITSRGFKEEDAVEVAKLIVQVLKDPENTAVHDEVKAAVAALTKKYPLYN >gi|284795498|gb|ADDQ01000051.1| GENE 148 148941 - 149570 890 209 aa, chain + ## HITS:1 COG:SP0745 KEGG:ns NR:ns ## COG: SP0745 COG0035 # Protein_GI_number: 15900640 # Func_class: F Nucleotide transport and metabolism # Function: Uracil phosphoribosyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 209 1 209 209 333 78.0 1e-91 MGKFQVIDHPLIQHKLTMIREKNCGTKVFREVVNEIAMLMAYEVSRDMPLEDVVIETPMG KSTQKTLSGKKVAIIPILRAGIGMVDGILELIPAAKVGHVGLYRDEETLQPHEYFVKLPE DIASRQLFVVDPMLATGGSAIMAIDSLKERGASNIKFVCLVAVPEGVKALQEAHPDVDIY TAALDERLNEDGYIVPGLGDAGDRLFGTK >gi|284795498|gb|ADDQ01000051.1| GENE 149 149676 - 149948 270 90 aa, chain + ## HITS:1 COG:no KEGG:EF2548 NR:ns ## KEGG: EF2548 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 90 1 90 90 175 98.0 4e-43 MKKNKKVLHAIAVIASVMSVLMYVSYIPQIYGNLHGEKGNPTQPLVAMINCIFWTIHGLY GDDGETRDKSIIFANVPGIIFGFFAFITAL >gi|284795498|gb|ADDQ01000051.1| GENE 150 150022 - 150258 203 78 aa, chain - ## HITS:1 COG:no KEGG:EF2547 NR:ns ## KEGG: EF2547 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 78 1 78 78 134 100.0 1e-30 MSNFNGMVTPVVPSDAGKDFAVDTHVTFLVHGQPQTGVVTKQLKNAAVVEIDETQKNNHL MVHSNGVIVINYKQLKKI >gi|284795498|gb|ADDQ01000051.1| GENE 151 150540 - 150866 320 108 aa, chain - ## HITS:1 COG:L54406 KEGG:ns NR:ns ## COG: L54406 COG4392 # Protein_GI_number: 15673594 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 1 105 1 105 108 105 67.0 2e-23 MPSSEYLFLTILGCTVATWLSRILPFLLLKKISLPQKLLEYLSFVPIVIMSALWFSSLFE QRIGHLPSLNLPYLFASFPTILAAILTKNLLLIVLVGIASFALIQNFI >gi|284795498|gb|ADDQ01000051.1| GENE 152 150853 - 151560 797 235 aa, chain - ## HITS:1 COG:L54719 KEGG:ns NR:ns ## COG: L54719 COG1296 # Protein_GI_number: 15673595 # Func_class: E Amino acid transport and metabolism # Function: Predicted branched-chain amino acid permease (azaleucine resistance) # Organism: Lactococcus lactis # 1 235 1 235 235 243 60.0 3e-64 MNHQLDARTGIREALPTVFGYIGIGIAFGIVGQAAGFSPLIVSAMSFFIFAGSAQFVTVS MLTGGSPILSIVLATFLVNARMILMGMTIAPYFKAESLGKNLWLGTLLTDESFALGMNKL NHTKGRLSFEWFNAANLISYATWVFSTIIGAYLGRFIANPQALGLEFAVVAMFIGLLYLQ IISDRSMKIALQLIMVLITFGLMSIGLIFIPSNLIVLVVTLIGCGIGVMIKHAFF >gi|284795498|gb|ADDQ01000051.1| GENE 153 151557 - 151658 144 33 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKTLIRSLCLIIEGLDFQTHVFKFYTERRKKRE >gi|284795498|gb|ADDQ01000051.1| GENE 154 151774 - 152325 583 183 aa, chain + ## HITS:1 COG:BH2909 KEGG:ns NR:ns ## COG: BH2909 COG1396 # Protein_GI_number: 15615472 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 7 173 10 174 189 132 38.0 4e-31 MEINTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNV PYTYLLEDDYVKENPVVKKTETVTQHSEDHSYRVFNYYSDNQERNFELFQFELDPGKKYQ AVGHSKRSTEYVMVIQGALAIEVGGQRYLLPKDAAMYFDANQVHTYINDGTDKVQAVVIN YYT >gi|284795498|gb|ADDQ01000051.1| GENE 155 152438 - 153769 1003 443 aa, chain + ## HITS:1 COG:no KEGG:EF2507 NR:ns ## KEGG: EF2507 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 443 1 443 443 658 99.0 0 MNKKIESLGNTALSLLSNTIIVVPYLLYIQLSDGHNLLTILPFVLFYTLRMTGIFLVRGI NLSLSSLGLLKISLLLGLAGSLIGIAGAFSFPLYSISGMLLGLSGALLPPSNQSIRFFLK EEGQKISHSNLLTTVLLTAVLFGALFFKATEIGLALLVYALYFLVALVAIKSYPVSLNEL EEESAEVSRKELILFVIFFVLLLLLRSGRLLTNAVEFDYAIVGACCFFVVAVLFVSHYGK RGAYKVSLEMNLATLINGIVGNYLFLFGSIYVAGVYGRAHMGIYLYLPYVLGMIFAMIAA SKTKQWSNNIPMIGLAGSLGILLFTSWTILGLFLLSFFKSTLNSFLARRYYQETDLPKDS RILIKYTTQTKGSLFHQFILMALMLVTVVGKGGTTQFLLELTGGKGISTQTSQFLTFIKN SNSLLVLLFIAVYFVVVFRQKKR >gi|284795498|gb|ADDQ01000051.1| GENE 156 153970 - 157648 3420 1226 aa, chain + ## HITS:1 COG:lin2282 KEGG:ns NR:ns ## COG: lin2282 COG4932 # Protein_GI_number: 16801346 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Listeria innocua # 775 1065 839 1148 1806 68 26.0 6e-11 MMLSILLAQNFGFAVNAYAVTTTEAQTETTDTAKKEAELSSTTPALPLATTTTSEMNQPT ATTESQTTEASTTAASDAATPSEQQTTEDKDTSLNEKALPDVQAPITDELLDSMSLAPIG GTEYSQTEVHRELNTTPVTATFQFAVGNTGYAPGSVYTVQLPEHLGYSTVSGEVTGIGAT WAVDAATKTLSITFNQRVSDTSFKVELKSYLTTDSEPLIKIETPGKNKKTYSFDLYEQVE PIQYNERTRTTGLDGEIFYNLDRTLTGNQTLELLTTETPGAVFGKQDNLEPQVFSYDVDI NGQILPETQTLLTPGKDYTLSDNSLGRIAVTVPNMNQQKAYSLSINRTIYLESASDYNYL YSQQYPTTKIGSISLKSTTGTKQTTDFTAKTSQTSKVIADREMRSMSYISFQSKGKYYVT IYGTLTETKVGQQIVLESTNGQEIKNPKFTAYGPLYENVKLEDYFDIKTEGGKLTLTATK DSYLRINISDLTMDFDKKDINLSLSTPVIGPNKAIQLVSDQYIEPISVVNPLNAETAWGN YDQNGAYSSRTTVSVMGSKETPIQNLEIKVKHPNYLSLRATKEIYFYYKLGTDYTVTPTS DGSVIKFTTPITNEIQIPIGFNYVPDSLPKDKSIPVDTIPITMSAEGLTPVDTTVTTNSK RGSERTLQSSKNQFLVNARNDSFDSLSVRTKIPAGADVLFDIYDVSNDQVDSIYPQYWDR GQYFDKPMTPNSPGYPTITFDENTNSYTFDFGKTNKRYIIEYKNANGWIDVPTLYITGTA KEPQSNNNEGSASVSVQNEALDILSATQAANPTLKNVTKTTVTTKNIDNKTHRVKNPTIE LTPKGTTNAQIDLNSITVKGVPEDAYSLEKTTNGAKVIFKDYTLTENITIEYNTVSANAG QIYTETTIDSETLNQMSASKKKVTTAPITLKFSEGDAEGIVYLATATFYTHNVEDENQAI AKVSFELIDNVTHTATEFTTDEKGQYSFDAIMTGDYTLRVTNVPQEYSVDEEYLTGKAIK LVKGDNQLKIPLTKTIDHSRLQVKDSTIYVGDSWKPEENFVSATDKTGQDVPFEKITVSG QVDNTKAGVYPIIYSYEGKEETAHVTVKPDQSKLEVKDTTIYVGDSWKPEDNFVSATDKT GQDVPFEKIDVQGTVNVDKIGDYEIVYKNGTKEAKAIVHVRDDSRLQVKDTTIYVGDKWE AEDNFVSATDKTGQDVPFEKITVSGQ Prediction of potential genes in microbial genomes Time: Sun May 15 13:00:23 2011 Seq name: gi|284795497|gb|ADDQ01000052.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont131.2, whole genome shotgun sequence Length of sequence - 11805 bp Number of predicted genes - 14, with homology - 13 Number of transcription units - 6, operones - 5 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 626 534 ## EF2505 cell wall surface anchor family protein + Prom 732 - 791 3.5 2 2 Op 1 . + CDS 825 - 1526 537 ## EF2504 hypothetical protein 3 2 Op 2 . + CDS 1527 - 2963 1158 ## EF2503 hypothetical protein + Term 2967 - 3007 6.1 + Prom 3120 - 3179 7.1 4 3 Op 1 1/0.000 + CDS 3207 - 4394 1065 ## COG0772 Bacterial cell division membrane protein 5 3 Op 2 4/0.000 + CDS 4419 - 4778 448 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family 6 3 Op 3 . + CDS 4775 - 5098 526 ## COG0509 Glycine cleavage system H protein (lipoate-binding) + Prom 5182 - 5241 3.6 7 3 Op 4 . + CDS 5272 - 5352 107 ## + Term 5380 - 5440 14.6 + Prom 5427 - 5486 8.0 8 4 Op 1 32/0.000 + CDS 5513 - 6550 1374 ## COG1135 ABC-type metal ion transport system, ATPase component 9 4 Op 2 22/0.000 + CDS 6543 - 7229 828 ## COG2011 ABC-type metal ion transport system, permease component 10 4 Op 3 . + CDS 7244 - 8062 1035 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen + Term 8222 - 8274 3.4 + Prom 8322 - 8381 9.0 11 5 Op 1 32/0.000 + CDS 8410 - 9225 749 ## COG0020 Undecaprenyl pyrophosphate synthase 12 5 Op 2 . + CDS 9222 - 10022 936 ## COG0575 CDP-diglyceride synthetase + Term 10060 - 10110 17.1 + Prom 10666 - 10725 10.7 13 6 Op 1 . + CDS 10786 - 11436 693 ## COG2102 Predicted ATPases of PP-loop superfamily + Prom 11438 - 11497 4.8 14 6 Op 2 . + CDS 11524 - 11751 426 ## EF2483 hypothetical protein Predicted protein(s) >gi|284795497|gb|ADDQ01000052.1| GENE 1 3 - 626 534 207 aa, chain + ## HITS:1 COG:no KEGG:EF2505 NR:ns ## KEGG: EF2505 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 207 1445 1651 1651 334 98.0 1e-90 KITVSGQVDTSKAGVYPIVYSYEGKEETANVTVKPDQSKLEVKDTTIYVGDSWKPEDNFV SATDRDGHAISFDKVQVKGEVDTKKTGEYQISYTTEPVNETKPAVQSRLFSIFSNETPRQ LTTVATVHVIDRNPTPLPDKNENNQTSSSTNQTTIKSSQYVTHIVKPDKQGRYPKTGEQT NGLYRVLGLVVLLIVIISGIVIKKKRK >gi|284795497|gb|ADDQ01000052.1| GENE 2 825 - 1526 537 233 aa, chain + ## HITS:1 COG:no KEGG:EF2504 NR:ns ## KEGG: EF2504 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 233 1 233 233 425 99.0 1e-118 MNQRTIYYGSIGTALFLSSGMLIASVNSYANEATTPGKYTVTYEVDGKIETATITVKENQ TELKLKDTFLGVNQAWSPLDNVVFLKDKEGRPLNLENVIIENNVNTQKVGLYFVTFRYES YLSIAKVYVNPTNFAAEGNMLAELPYSQAMIGPERPIIASRQDKEQQTKQEKKKNKIEQE RVNKKVLLNDELLKKIDTIAPVEITGGAASGSSQFGTTLSFLSGSLLYGTRRV >gi|284795497|gb|ADDQ01000052.1| GENE 3 1527 - 2963 1158 478 aa, chain + ## HITS:1 COG:no KEGG:EF2503 NR:ns ## KEGG: EF2503 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 478 1 478 478 866 99.0 0 MEFLLLDDRENLKLAIIRKLEQQYSFSERKDRLCKQLAISPYLLERNITEINADLQRFGL INEMEICEKNNEILLSQSLRISSSIIEEYYLKDSLEFNLLKTIFFHQFTSIKKYGEKHGM SRTVVYKIVDHIRKELGQYGIKLSKNLQLSGNEMAIRQYFTMLYYRIYKDSEELYNQTDL RAVNQLLAQLKGSYENITNFHLFKHYVLVALERTQRKANYFLSQEENPFAFDEESSIYQE IQSWINEVMKATHAEKNAEIQGIIGNLSVYQSELISEHLLSSHNEAITATKTLFFSYMPF TISDEEFYQEIVPIIYQHRFITPFIDITLRIMDLEFFQERYPIVFNSCRQFLFALDCSAF EFSKLSLFFDLLLVLSRLYDQRNEKSTINLYVNFTQGEKYTQFIKEQIKIFESFSIHFHS AIRPDTDLVVSDYLPKTLFSVKCLIWLAPPRASDWQNFGNEIVRINKELQQTKQRKSE >gi|284795497|gb|ADDQ01000052.1| GENE 4 3207 - 4394 1065 395 aa, chain + ## HITS:1 COG:L115706 KEGG:ns NR:ns ## COG: L115706 COG0772 # Protein_GI_number: 15672878 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Lactococcus lactis # 3 386 5 388 414 380 53.0 1e-105 MNRKEKTNLDSRIDYGVILPVFLLSLIGMLSLYVALYNDPSKPKIGSLLMKQGLWYLVGG LSIVIIMHFSSKLLWRLTPVFYALGLVLMGLLLKFYDPVLAEQTGSKNWIRFGGTTFQPS ELMKIAFILMLAYIVTMHNVKYVDRTLKSDFWLIAKMLLVAIPVIVLVLLQKDFGTMLVF LAIFGGVFLMSGITWKIIVPAFIIAALVGAGTIYLVTTETGRDLLSKIGIKAYQFDRIDL WLNPFHTDPDRSFQPALALTAIGSGGLFGKGFNVSDVYVPVRESDMIFTVVGENFGFIGG CFIILLYFILIYRMIRVCFDTNNEFYAYIATGIIMMILFHVFENIGANIGLLPLTGIPLP FISQGGSSILGNMIGVGLIMSMRYQQETVRTRSGR >gi|284795497|gb|ADDQ01000052.1| GENE 5 4419 - 4778 448 119 aa, chain + ## HITS:1 COG:lin2520 KEGG:ns NR:ns ## COG: lin2520 COG1393 # Protein_GI_number: 16801582 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Listeria innocua # 1 115 1 114 117 130 55.0 6e-31 MYTLYEYPKCSTCKKAKTWLDQQGVKYQAIDIKATPPSSEQLAKWMKETGLPVRRFFNTS GVLYREQGLKDLVDSFSIEEASQRLAADGMLIKRPILLKDNTFLTNGFKEADYEGVLGK >gi|284795497|gb|ADDQ01000052.1| GENE 6 4775 - 5098 526 107 aa, chain + ## HITS:1 COG:lin2519 KEGG:ns NR:ns ## COG: lin2519 COG0509 # Protein_GI_number: 16801581 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system H protein (lipoate-binding) # Organism: Listeria innocua # 11 107 15 114 125 72 40.0 2e-13 MSEMKQIDQLWIVPTEAGYKIGLTAEAQEDLGKITFATFPKVGQTLAKGDSLIELEAEKA VSEFSSPLSGKVVAINEAADQEPSALDEENAWIAVLADVEPTEFENL >gi|284795497|gb|ADDQ01000052.1| GENE 7 5272 - 5352 107 26 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNLLRGARYSQRYAKNQVPYEVIIEK >gi|284795497|gb|ADDQ01000052.1| GENE 8 5513 - 6550 1374 345 aa, chain + ## HITS:1 COG:lin2514 KEGG:ns NR:ns ## COG: lin2514 COG1135 # Protein_GI_number: 16801576 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Listeria innocua # 3 342 1 338 340 386 58.0 1e-107 MALIELRHVKKEFSGKAGKVTALKDIDLTVESGDIYGIIGYSGAGKSTLVRLLNGLETPT EGEVEIQGQDIALLPNKELRNFRKKIGMIFQHFNLLWSRTVLENIMLPLEIAGVPKQNRK SRAEELIKLVGLEGRETAYPSQLSGGQKQRVGIARALANNPDILLCDEATSALDPQTTDE VLELLLKINQELNLTVVLITHEMHVIRKICNRVAVMEYGEIVEEGKVIDIFKKPQTEIAK RFIQQEADKNIEETELVVEEMLEQYPNGKIVRLLFHGEQAKLPIISHIVQEYQVEVSIIQ GNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLRVETEVIGNE >gi|284795497|gb|ADDQ01000052.1| GENE 9 6543 - 7229 828 228 aa, chain + ## HITS:1 COG:BH3480 KEGG:ns NR:ns ## COG: BH3480 COG2011 # Protein_GI_number: 15616042 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Bacillus halodurans # 20 228 10 218 218 220 61.0 2e-57 MNNRGLASFFDFSQIDISKLQEKTIETLYMTGISIIVVAILGLILGLLLFETSGRKGILS RLLYWLVAIFVNIFRSIPFIILIVLLIPFTKIILGSMSGVKGSLPALIISAAPFYARMVE IAFREVDKGVIEAAKAMGANRFQIIWKVLLPESLPALVSGLTVTTISLVGYTAMAAAIGA GGLGSLAYQDGFQRGQNTVTLVATICILIIVFAIQWLGDTVAKKIDKR >gi|284795497|gb|ADDQ01000052.1| GENE 10 7244 - 8062 1035 272 aa, chain + ## HITS:1 COG:lin2512 KEGG:ns NR:ns ## COG: lin2512 COG1464 # Protein_GI_number: 16801574 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Listeria innocua # 3 272 2 276 276 283 53.0 2e-76 MKKRTLWSVITVAVAVLVLGACGNKKSDDSVLKVGASPVPHAEILEHVKPLLEKEGVKLE VTTYTDYVLPNKALESGDIDANYFQHVPFFNEAVKENDYDFVNAGAIHLEPVGLYSKKYK SLQEIPDGSTIYVSSSVSDWPRVLTILEDAGLITLKEGVDRTTATFDDIDKNTKKLKFNH ESDPAIMTTLYDNEEGAAVLINSNFAVDQGLNPKKDAIALEKESSPYANIIAVRKEDENN ENVKKLVKVLRSKEVQDWITKKWNGAIVPVNE >gi|284795497|gb|ADDQ01000052.1| GENE 11 8410 - 9225 749 271 aa, chain + ## HITS:1 COG:lin1352 KEGG:ns NR:ns ## COG: lin1352 COG0020 # Protein_GI_number: 16800420 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Listeria innocua # 26 259 23 252 252 316 63.0 3e-86 MLRFFPQKNKYVEEASQYAFDKEGQIPQHIAIIMDGNGRWAQNRRLPRIAGHKEGMDTVK KITKHASHLGVKVLTLYAFSTENWKRPTDEVNFLMQLPVDFFDTFVPELIKENVKVNVMG YQEFLPSHTQDAVKRAIEQTKDNTGMVLNFALNYGARAELLTAMKQIAAEVSEKAYTADE ITEETIADHLMTGFLPTELRDPELLIRTSGEERISNFLLWQIAYSELFFTKALWPDFSGD TLETAIASFQNRNRRFGGLKETTETEGSDPQ >gi|284795497|gb|ADDQ01000052.1| GENE 12 9222 - 10022 936 266 aa, chain + ## HITS:1 COG:SPy1964 KEGG:ns NR:ns ## COG: SPy1964 COG0575 # Protein_GI_number: 15675762 # Func_class: I Lipid transport and metabolism # Function: CDP-diglyceride synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 266 1 264 264 241 52.0 7e-64 MRQRVITAIVALIIFIPIIWYGGFAIEIAAVALAVVGVYELFRMKGLTLLSFEGVLSALG AVFLVIPTIKWLNFLPEMQTNFILFYVTVMLLLGASVISKNTYTIEEAGFPVIVSLYVGM GFQNFISARSAGFEVLLFALFIVWATDIGAYLFGRRFGRHKLMPDVSPNKTIEGALGGIL SAVVVAALFLVFTANKGLFPYPMPVMLVLTVLFSIVGQFGDLVESSIKRHYGVKDSGNIL PGHGGILDRFDSLLFVFPIMHLCGLF >gi|284795497|gb|ADDQ01000052.1| GENE 13 10786 - 11436 693 216 aa, chain + ## HITS:1 COG:AF0720 KEGG:ns NR:ns ## COG: AF0720 COG2102 # Protein_GI_number: 11498327 # Func_class: R General function prediction only # Function: Predicted ATPases of PP-loop superfamily # Organism: Archaeoglobus fulgidus # 8 215 12 210 214 116 32.0 3e-26 MKKFCLSYSSGKDCLLAMDRLIQAGNQPVALVTTLSDEINRSWFHGIPISVLEAAAEALD LPLVISHNNETNYTEKVVEALHETKKLGAETVCFGDIDIEQNGAWDRQVALSAGLEPQLP LWQENREALVKEFLAKGYTAIIKTVSKEAGIPIKFLGEPLNETFITYLKEHQLDICGENG EYHTLVIDGPLFKKRLHYYASGIYESPYAYSLIIDA >gi|284795497|gb|ADDQ01000052.1| GENE 14 11524 - 11751 426 75 aa, chain + ## HITS:1 COG:no KEGG:EF2483 NR:ns ## KEGG: EF2483 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 75 1 75 75 115 100.0 6e-25 MEETVFFNLGNALASKRDQKELIKEAQIAKDTRKIPGKLIIVEDEENGTHILFELADQTE PSAETKEFKVKKVID Prediction of potential genes in microbial genomes Time: Sun May 15 13:00:43 2011 Seq name: gi|284795496|gb|ADDQ01000053.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont133.1, whole genome shotgun sequence Length of sequence - 12911 bp Number of predicted genes - 15, with homology - 15 Number of transcription units - 6, operones - 3 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 146 - 205 6.6 1 1 Op 1 . + CDS 279 - 449 273 ## gi|115534809|ref|YP_783891.1| hypothetical protein pRE25p07 2 1 Op 2 . + CDS 463 - 1065 769 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs 3 1 Op 3 . + CDS 1081 - 1773 512 ## COG0550 Topoisomerase IA - Term 1978 - 2032 3.1 4 2 Tu 1 . - CDS 2108 - 5080 1992 ## COG4644 Transposase and inactivated derivatives, TnpA family - Prom 5103 - 5162 8.0 + Prom 5122 - 5181 6.0 5 3 Tu 1 . + CDS 5211 - 5816 428 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs + Prom 5819 - 5878 2.5 6 4 Op 1 . + CDS 6008 - 6175 62 ## SSU05_0951 DNA recombinase, putative 7 4 Op 2 . + CDS 6179 - 6505 211 ## SSU05_0951 DNA recombinase, putative 8 4 Op 3 . + CDS 6506 - 6922 422 ## SSU05_0952 recombinase 9 4 Op 4 . + CDS 6924 - 8486 596 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs + Term 8491 - 8553 14.3 + Prom 8548 - 8607 7.0 10 5 Op 1 . + CDS 8629 - 8853 211 ## SUB1185 puative DNA-binding protein 11 5 Op 2 . + CDS 8868 - 9737 597 ## SSU05_0955 hypothetical protein 12 5 Op 3 . + CDS 9718 - 10452 555 ## PROTEIN SUPPORTED gi|239830964|ref|ZP_04679293.1| Ribosomal protein L11 methyltransferase 13 5 Op 4 . + CDS 10485 - 11393 128 ## smi_1710 streptomycin aminoglycoside 6-adenyltransferase 14 5 Op 5 . + CDS 11390 - 11644 254 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 11824 - 11866 -0.3 + Prom 11858 - 11917 6.7 15 6 Tu 1 . + CDS 11963 - 12757 405 ## COG3231 Aminoglycoside phosphotransferase + Term 12767 - 12825 18.1 Predicted protein(s) >gi|284795496|gb|ADDQ01000053.1| GENE 1 279 - 449 273 56 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|115534809|ref|YP_783891.1| ## NR: gi|115534809|ref|YP_783891.1| hypothetical protein pRE25p07 [Enterococcus faecalis] # 1 56 1 56 56 85 100.0 7e-16 MKKFIYRVLENDEVVAIFNEQQYAQDFIAYEKTISDKQFEIEKVDIADWLLQPREF >gi|284795496|gb|ADDQ01000053.1| GENE 2 463 - 1065 769 200 aa, chain + ## HITS:1 COG:pli0059 KEGG:ns NR:ns ## COG: pli0059 COG1961 # Protein_GI_number: 18450341 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Listeria innocua # 3 188 2 197 199 104 38.0 1e-22 MAKIGYARVSSKEQNLDRQLKALEGVSKVFSDKLSGQSVERPQLQAMLNYIREGDIVVVT ELDRLGRNNKELTELMNQIQIKGATLEVLNLPSMNGIEDENLRRLINNLVIELYKYQAES ERKRIKERQAQGIEIAKKKGKFKGRQPKFKENDPRLQHAFDLFLNGCSDKEVEEQTGINR RTFRRYRSRYNVTVDQRKKQ >gi|284795496|gb|ADDQ01000053.1| GENE 3 1081 - 1773 512 230 aa, chain + ## HITS:1 COG:BH3387 KEGG:ns NR:ns ## COG: BH3387 COG0550 # Protein_GI_number: 15615949 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Bacillus halodurans # 2 226 3 226 721 171 41.0 9e-43 MSTVILAEKPSQALAYASALKQSTKKDGYFEIKDPLFTDETFITFGFGHLVELAEPGHYN EKWQNWKLESLPIFPDRYDFEVAKDKGKQFKIVAELLKKANTIIVATDSDREGENIAWSI IHKANAFSKDKTYKRLWINSLEKDVIRSGFQNLQPGMNYYPFYQEAQTRQIADWLIGMNA SPLYTLNLQQKGVQGTFSLGRVQTPTLYLIYQRQEAIENFKKEPFFLNNS >gi|284795496|gb|ADDQ01000053.1| GENE 4 2108 - 5080 1992 990 aa, chain - ## HITS:1 COG:YPCD1.90c KEGG:ns NR:ns ## COG: YPCD1.90c COG4644 # Protein_GI_number: 16082773 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, TnpA family # Organism: Yersinia pestis # 435 987 207 763 771 459 41.0 1e-128 MKDKKDSFGTYLGEPSAEQLNQFFYLHEKDLEIISTMRLSSTKLGFSLQLSSLRFLGTFC TDINTIPENAIIYVAAQLKINPKEIHNYKRRQTKDDHVKLIKNIYGYKEFSHLKKYLSNW LLNRAIYTTESTNMLFDMLLKKCLDEKIILPGFTTFSRFIASIVEKAEEQLYKQLALIPT NKEKKQLLNLLELVGTPVYGATIKMDILRTPLTDYSLKEISRGFERLKQFQTFSTENWQI KLIPEGKIKILANYAFKDKAQLIQRMSEQKKIALLVAFIYIYKRKAMDEQILALVNFFET IFRRAKNKEANERLRTIKDLDRAASTLSDIVEFVMIESSNNSDSSIRSQILKKYSEESIY SAVTQVRKLVKNEQEPIAIVELLTTYRKFKKFIPDILITLNFDSNNYGNNCKELWSFINN RFPKPITYKMFQTIEHTIPKKWVYYIQENPNQTNKCVLIAAIECLIQSFKRHDIYISQSN LYNNPMDCLLDKQTWLQQKGIVLEQLGLPSSGEEVSLWLKKDLDLSYKEALRRWPTSNMA RIENNSQLIVSRLKKVYENKEEKAFKLRIQQLLPKIDLTDLLLEVNQQLNLTQLFNHLND KDTKMKDLDISLLAVLLAEACNIGFSPVSKNSIDSLKYDRLIYVNHHYIRVDTLSAANQK IIHAHRKLAITKLWGDGYMASADGIRYTTPQRSLYSKSNPKYFGRGRGITFYNFISDQYI GFHGMVVSGTLRDSLYLLEGFLNQPSELTPNQIMTDTAGYSDMIFGLFALLGFQFSPRIA NDKGTKLWRIDSDADYHELNTLSQNKINLTLIQTYWEEILRVAGSLKSGKVNATELTKAL QRNGQPTELGKAITEYGKVYKTKHQLRYISDEIYARQILEQLNKGESRHALCRNIFYGRK GKLYQTYYDGMEEQLNALGLVTNAIIYWNSLYLEKVFEQMKKEGYDCSEEMLRKQSPLIS DHINFVGKYTFKYEQELSDGKLRPLNLEKF >gi|284795496|gb|ADDQ01000053.1| GENE 5 5211 - 5816 428 201 aa, chain + ## HITS:1 COG:pli0059 KEGG:ns NR:ns ## COG: pli0059 COG1961 # Protein_GI_number: 18450341 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Listeria innocua # 2 199 1 199 199 174 46.0 1e-43 MVKIGYIRVSGQDQNLDRQVALLNQLKIDKLFQEKASGKDCNRPEFQKLLNYIREGDCVV VASLDRLGRNYEDIKQTVAFMKQKNVSLQILDAPFLNFNTGNELLDTAMFDMFLSLLSYI AQNEREKIKERQRQGVLLAKQAGRYKGRPTEYAPNSKNPQKRLVYQTVVKQLKQGDTVAE IATENGLSRPTVYKIKKANNL >gi|284795496|gb|ADDQ01000053.1| GENE 6 6008 - 6175 62 55 aa, chain + ## HITS:1 COG:no KEGG:SSU05_0951 NR:ns ## KEGG: SSU05_0951 # Name: not_defined # Def: DNA recombinase, putative # Organism: S.suis_05ZYH33 # Pathway: not_defined # 1 55 1 55 165 94 100.0 9e-19 MLFLRDGEIKATLTTMMNKLAFSHKLILEPLFKSVSQIDEESDRERMDAIDKLME >gi|284795496|gb|ADDQ01000053.1| GENE 7 6179 - 6505 211 108 aa, chain + ## HITS:1 COG:no KEGG:SSU05_0951 NR:ns ## KEGG: SSU05_0951 # Name: not_defined # Def: DNA recombinase, putative # Organism: S.suis_05ZYH33 # Pathway: not_defined # 1 108 58 165 165 179 99.0 3e-44 MEERNTLIALMSKGFLEPALFNQERNVLDSEIKNLTTEKTNLVTNSASGVLRANEIKDLI NYVSADNFNGDYTEELFEEFVVNIIVNSRDELTFNLKCGLSLKEKVVR >gi|284795496|gb|ADDQ01000053.1| GENE 8 6506 - 6922 422 138 aa, chain + ## HITS:1 COG:no KEGG:SSU05_0952 NR:ns ## KEGG: SSU05_0952 # Name: not_defined # Def: recombinase # Organism: S.suis_05ZYH33 # Pathway: not_defined # 1 138 1 138 138 255 100.0 4e-67 MAYIPYGYKIQDGVVTVDEKAAGQVKVFFEKYISGLSLTVAGEQAGIEKTHSVMGRILKN VNYLGNDTYPAIIDKEIFDKAEEVRDKRAKDLGRVVELAAFTSPPPKERFKMKKADNKMP VDPFERAEYLYSLIESEE >gi|284795496|gb|ADDQ01000053.1| GENE 9 6924 - 8486 596 520 aa, chain + ## HITS:1 COG:SA0057 KEGG:ns NR:ns ## COG: SA0057 COG1961 # Protein_GI_number: 15925764 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Staphylococcus aureus N315 # 22 501 2 467 542 114 26.0 4e-25 MTEKNIMVIPARKRVGSTAAKEKIKKLRVAAYCRVSTETEEQNSSYEVQVSHYTEFIKKN NEWEFAGIFADDGISGTNTKKRDEFNRMIAECMDGNIDMVITKSISRFARNTLDCLQYIR QLKDKNISVYFEKENINTTDAKGEVLLTIMASLAQQESQSLSQNVKLGLQYRYQQGKVQV NHKRFMGYTKDEDGNLTIVPEEAEIIKRIYREYLEGQSLVGIGRALEKDGILTAAGKPRW RPESVKKILQNEKYIGDALLQKTVTVDFLTKKRVKNEGHVPQYYVENSHEAIIPKELFLQ AQEEIHRRSNIYTGEGKNKRIYSSKYALSAITFCGDCGDIYRRVYWNIHGRKEFVWRCVT RIEQGPEVCKNRTVKEDELYGAVMTAINKLLAGGNNMIKTLEENIHAVIGETTEYQISEI NNSLEEKQKELIKLANKGQDYDHLADEIDELRDKRQILLVEDASLSGENERINELIEFIR KNKFRTLEYDDKLVRKIIQSVTVYEGHFVIAFKSGIEMEI >gi|284795496|gb|ADDQ01000053.1| GENE 10 8629 - 8853 211 74 aa, chain + ## HITS:1 COG:no KEGG:SUB1185 NR:ns ## KEGG: SUB1185 # Name: not_defined # Def: puative DNA-binding protein # Organism: S.uberis # Pathway: not_defined # 1 74 1 74 74 125 98.0 4e-28 MTTAEMIKELCEQMNISVSELARRIGQTPQNFNKKLQRETVTLDELKAIADVLGVKFVQA FILPDGEEIKISNE >gi|284795496|gb|ADDQ01000053.1| GENE 11 8868 - 9737 597 289 aa, chain + ## HITS:1 COG:no KEGG:SSU05_0955 NR:ns ## KEGG: SSU05_0955 # Name: not_defined # Def: hypothetical protein # Organism: S.suis_05ZYH33 # Pathway: not_defined # 1 289 1 289 289 580 100.0 1e-164 MVGNVIQIVTEKLSSLPFIEGIVLGGSRARGTHTENSDIDIGIYYNSDSFDLTAINQIAT ELDDKNRNNLVVPPGAWGDWINGGGWLFINGYHVDLILRDIKRVEQIIKDTEQGIVTANY QTGHPHGYISAMYRGELAISKILYAKNESLCELKKQAEIYPTALKKSLMNFFIFEAEFSL MFVKANAGVEDKYYIAGHVFRIISCLNQVLFACNNAYCINEKKAIKLLETFEYKPEKYAE RVNHIFEVLGLSLFECYDMTEKLYKEVNEIVSEINNFLNEESSDERKQI >gi|284795496|gb|ADDQ01000053.1| GENE 12 9718 - 10452 555 244 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239830964|ref|ZP_04679293.1| Ribosomal protein L11 methyltransferase [Ochrobactrum intermedium LMG 3301] # 1 243 1 243 245 218 44 2e-56 MKENKYDDNIFFQKYSQMSRSQKGLAGAGEWETLKKMLPDFKGKRVLDLGCGYGWHCIYA MENGASSVVGVDISHKMLEVAKGKTHFPQIEYECCAIEDVDFPEESFDVILSSLAFHYVA DYENLIKKIYRMLKAGGNLVFTVEHPVFTAHGTQDWYYNEKGEILHFPVDNYYYEGKRTA MFLEEKVTKYHRTLTTYLNTLLSNSFIINQIVEPQPPENMMDIPGMADEMRRPMMLIVSA KKKM >gi|284795496|gb|ADDQ01000053.1| GENE 13 10485 - 11393 128 302 aa, chain + ## HITS:1 COG:no KEGG:smi_1710 NR:ns ## KEGG: smi_1710 # Name: aadE # Def: streptomycin aminoglycoside 6-adenyltransferase # Organism: S.mitis_B6 # Pathway: not_defined # 1 302 1 302 302 564 93.0 1e-159 MRSEKEMMDLVLSLAEQDERIRIVTLEGSRANINIPKDEFQDYDITYFVSDIEPFISNDD WLNQFGNIIMMQKPEDMELFPPEEKGFSYLMLFDDYNKIDLTLLPLEELDNYLKGDKLIK VLIDKDCRIKRDIVPTDIDYHVRKPSAREYDDCCNEFWNVTPYVIKGLCRKEILFAIDHF NQIVRHELLRMISWKVGIETGFKLSVGKNYKFIERYISEDLWEKLLSTYRMDSYENIWEA LFLCHQLFRAVSGEVAERLHYAYPEYDRNITKYTRDMYKKYTGKTGCLDSTYAADIEERR EQ >gi|284795496|gb|ADDQ01000053.1| GENE 14 11390 - 11644 254 84 aa, chain + ## HITS:1 COG:BS_yyaR KEGG:ns NR:ns ## COG: BS_yyaR COG0454 # Protein_GI_number: 16081126 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 1 69 1 74 173 62 41.0 2e-10 MITEMKAGHLKDIDKPSEPFEVIGKIIPRYENENWTFTELLYEAPYLKSYQDEEDEEDEE ADCLEYIDNTDKIIYLLYRRYRRM >gi|284795496|gb|ADDQ01000053.1| GENE 15 11963 - 12757 405 264 aa, chain + ## HITS:1 COG:DR0066 KEGG:ns NR:ns ## COG: DR0066 COG3231 # Protein_GI_number: 15805107 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aminoglycoside phosphotransferase # Organism: Deinococcus radiodurans # 1 264 7 263 263 122 32.0 7e-28 MAKMRISPELKKLIEKYRCVKDTEGMSPAKVYKLVGENENLYLKMTDSRYKGTTYDVERE KDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEEYEDEQSPEKIIELYAECIR LFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKTEKP EEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRADKWYDIAFCVRSIREDIGEEQYVEL FFDLLGIKPDWEKIKYYILLDELF Prediction of potential genes in microbial genomes Time: Sun May 15 13:01:04 2011 Seq name: gi|284795495|gb|ADDQ01000054.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont135.1, whole genome shotgun sequence Length of sequence - 2439 bp Number of predicted genes - 2, with homology - 1 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 93 - 152 6.1 1 1 Tu 1 . + CDS 172 - 1500 944 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair + Term 1597 - 1629 -0.2 + Prom 2015 - 2074 7.3 2 2 Tu 1 . + CDS 2107 - 2208 134 ## + Term 2247 - 2299 9.0 Predicted protein(s) >gi|284795495|gb|ADDQ01000054.1| GENE 1 172 - 1500 944 442 aa, chain + ## HITS:1 COG:pli0067 KEGG:ns NR:ns ## COG: pli0067 COG0389 # Protein_GI_number: 18450349 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Listeria innocua # 6 433 6 426 426 405 49.0 1e-112 MNLTFDYTKEPSRDVLCIDVKSFYASVECVERGLDPLKTMLVVMSNSENSGGLVLAASPM AKKVLGISNVTRKNEVPDHPNLIIVSPRMKLYMKKNQEINNLYKRFVSDEDHSVFSVDES FLDVTASLTYFKCDTAYKLAKIIQRVIYNHMGLYVTIGIGENPLLAKLALDNEAKNAPGF VAEWRYEDVPKKVWPISPLTEFCGIGNRMAARLKKLGIRSIYDLAHIEPYMLKERFGIMG LQLYAHSWGIDRSFLGQKAGRPTEKSFGNSQVLPKDYANKEQIKLVLKELSDQVASRLRM ASCQTTCVSLFVGYSKGQTDKYGQTGWRRQMKVEPSNNTKVLTEHVLRLFEENYAPGVDV RNLGVSYGRLVWNKNLQLDLFSVPEEQIHETDMYFLIDKIRQKFGFKALIHASSLMEGAT AISRASLVGGHAGGTVGLGTTK >gi|284795495|gb|ADDQ01000054.1| GENE 2 2107 - 2208 134 33 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKDLMSLVIAPIFVGLVLEMISRVLDEEDDNRK Prediction of potential genes in microbial genomes Time: Sun May 15 13:01:11 2011 Seq name: gi|284795494|gb|ADDQ01000055.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont136.1, whole genome shotgun sequence Length of sequence - 17115 bp Number of predicted genes - 19, with homology - 17 Number of transcription units - 12, operones - 4 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 3 - 116 98 ## gi|293388387|ref|ZP_06632896.1| conserved hypothetical protein 2 1 Op 2 . + CDS 109 - 768 568 ## Dred_0988 hypothetical protein 3 1 Op 3 . + CDS 818 - 1000 158 ## gi|217388391|ref|YP_002333421.1| hypothetical protein pMG2200_61 + Term 1009 - 1060 5.1 + Prom 1002 - 1061 7.3 4 2 Tu 1 . + CDS 1116 - 1217 83 ## - Term 1141 - 1197 15.4 5 3 Tu 1 . - CDS 1211 - 1903 448 ## EF3003 putative lipoprotein - Prom 1941 - 2000 9.8 + Prom 1871 - 1930 11.2 6 4 Tu 1 . + CDS 2056 - 3822 1814 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) + Term 3832 - 3884 15.4 + Prom 3829 - 3888 4.3 7 5 Op 1 . + CDS 4007 - 4642 317 ## gi|256962430|ref|ZP_05566601.1| predicted protein 8 5 Op 2 . + CDS 4665 - 5096 337 ## SEQ_0188 phage holin 9 5 Op 3 . + CDS 5099 - 5626 689 ## gi|256962428|ref|ZP_05566599.1| predicted protein 10 5 Op 4 . + CDS 5669 - 7849 2167 ## COG3409 Putative peptidoglycan-binding domain-containing protein + Term 7869 - 7906 5.7 + Prom 7878 - 7937 8.8 11 6 Op 1 . + CDS 7957 - 8499 225 ## gi|256962426|ref|ZP_05566597.1| predicted protein 12 6 Op 2 . + CDS 8566 - 9141 334 ## gi|256962425|ref|ZP_05566596.1| predicted protein + Term 9293 - 9338 6.1 + Prom 9310 - 9369 6.9 13 7 Tu 1 . + CDS 9415 - 10734 630 ## llmg_0703 putative transposase + Prom 10858 - 10917 6.9 14 8 Tu 1 . + CDS 10970 - 11059 135 ## + Prom 11082 - 11141 4.0 15 9 Tu 1 . + CDS 11324 - 11809 391 ## p2METDI0018 hypothetical protein + Term 11862 - 11898 1.0 + Prom 11845 - 11904 8.3 16 10 Op 1 . + CDS 11929 - 12678 360 ## Arch_1492 hypothetical protein 17 10 Op 2 . + CDS 12680 - 13591 319 ## Amet_0199 hypothetical protein + Term 13693 - 13762 17.2 + Prom 14471 - 14530 10.4 18 11 Tu 1 . + CDS 14695 - 15108 254 ## gi|256962422|ref|ZP_05566593.1| predicted protein + Term 15153 - 15184 3.1 + Prom 15392 - 15451 8.1 19 12 Tu 1 . + CDS 15478 - 17113 1252 ## COG1204 Superfamily II helicase Predicted protein(s) >gi|284795494|gb|ADDQ01000055.1| GENE 1 3 - 116 98 37 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293388387|ref|ZP_06632896.1| ## NR: gi|293388387|ref|ZP_06632896.1| conserved hypothetical protein [Enterococcus faecalis S613] # 1 37 21 57 57 69 97.0 6e-11 KKTKMERALEGVVCGFPRNTADDPILKITMSQEHTNG >gi|284795494|gb|ADDQ01000055.1| GENE 2 109 - 768 568 219 aa, chain + ## HITS:1 COG:no KEGG:Dred_0988 NR:ns ## KEGG: Dred_0988 # Name: not_defined # Def: hypothetical protein # Organism: D.reducens # Pathway: not_defined # 1 218 3 220 222 98 33.0 1e-19 MDEKRKDKIQRLLALANDANDEESMTALAKAQELMLAYGIDEEEVFHYQQHQRQENVVDK VIYKGRPHKWVYRLAGIIAKNFRVKNYYQSSSDIELHYVGLTTDAEIAEITFLYAKGSVA FCSKEFMKQPEIKRKYKRKWQLKQDYIEGYLTALSSVFEAQVLTNGYELALQLPVAVHEE VSKLGLVKGKDTSHQVENFDAFQSGYQEGLQFKNKELIN >gi|284795494|gb|ADDQ01000055.1| GENE 3 818 - 1000 158 60 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|217388391|ref|YP_002333421.1| ## NR: gi|217388391|ref|YP_002333421.1| hypothetical protein pMG2200_61 [Enterococcus faecalis] # 1 60 1 60 60 75 98.0 1e-12 MAIKKGNKRAQSNLNLKQQEGLKYLKTKYRKSESKILAIGLEMLLEQEQAGLLIPKLYKR >gi|284795494|gb|ADDQ01000055.1| GENE 4 1116 - 1217 83 33 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSTLKIKLSIDEINKKKPSYLEDFFLLINCASY >gi|284795494|gb|ADDQ01000055.1| GENE 5 1211 - 1903 448 230 aa, chain - ## HITS:1 COG:no KEGG:EF3003 NR:ns ## KEGG: EF3003 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 230 1 230 230 241 76.0 2e-62 MKKLVFVALVVLLTGCSSQKANESKDQEESATNSTSVKKSTSNYNSSTESSSSTEIKETS TSSSTNQVSTTPKSEPSTNVEESNSLESAPYAVDISNLNNPLVFNFNGMNVPNSVTLENL NSTPTATFRTKLIGAENSQLKESINKYELSINTIPTKEIRIFSSGDNSIRTVKVNTELIL GSNIYSNYERNISGNLYLFINKNGTISLITPNYAGNVTDDQKDVMLEVTQ >gi|284795494|gb|ADDQ01000055.1| GENE 6 2056 - 3822 1814 588 aa, chain + ## HITS:1 COG:L70517 KEGG:ns NR:ns ## COG: L70517 COG0791 # Protein_GI_number: 15673041 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Lactococcus lactis # 165 288 7 122 259 96 45.0 1e-19 MNYSQKAVNLCKKYSSFSLKAVAGRDGILSIGYGHLSNDRHPIKSGMTITESQAEQILRD DLSEHATLISKLLAIKATQNQFDALVSFSHSKGLGFLPSSDVMHFTNTKEFNSAAREMKL YVYDIGSIKLPKLVERRNAEASLYLEGASGNTETNNQARIGFDVMIRWMEGKKAQGVTYS MDYRLGPNSYDCSSAVYFALREAGFIPPTTYPGNTDSLFGQLERVGWSQLPLINGNYATQ RGDIFIWGIRGNSGGEFGHTGIFIDENMIIHCNASTNVGITINSYDQYWVSAGRPTAAIY RFGGASKPYPGDSSGSKGDSVNPSAGVFYPSMRLPVSGDTDPNSPALDYYEAGQAIVYDS YVFANGYAWISYVAGSGLRRYVAVGPDDGRTDTVWGTGFLNNTPSGSGSNTGSALSGVFY PSMRLPVSGDTDPNSPALAYYEAGQAIIYDSYVFANGYAWISYIAGSGLRRYVAVGPDDG RTDTVWGTGFFDNGGDPGSQAHPNSIGLVPKAGNFVPNRKLPVSADTDPNSAALDYYEAG QSIGYDSYIFENGYAWISYIAGSGLRRYVAVGPDDGRTDTVWGKGFFN >gi|284795494|gb|ADDQ01000055.1| GENE 7 4007 - 4642 317 211 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256962430|ref|ZP_05566601.1| ## NR: gi|256962430|ref|ZP_05566601.1| predicted protein [Enterococcus faecalis Merz96] # 1 211 30 240 240 400 99.0 1e-110 MKFWAEVTRLSDIYRFTNKEEDLINVMEYMERYIGVSAKNAKHRSELYKLCIPYEDFISS FDLAVWEALETYAGQEKVEHTFKNIVLFRMNLAEKSVWRLYKSNTCDSADKNGISYDSAR WNELDSNTCQQKDAGIDIEEAICYKEMLKNYIKKFPKQSKFILLLLQGYTSCEASKLCQW GSNYDEKSRKRAQRTKQHFKKFLNEMLCESL >gi|284795494|gb|ADDQ01000055.1| GENE 8 4665 - 5096 337 143 aa, chain + ## HITS:1 COG:no KEGG:SEQ_0188 NR:ns ## KEGG: SEQ_0188 # Name: not_defined # Def: phage holin # Organism: S.equi_equi # Pathway: not_defined # 18 123 17 122 123 120 58.0 1e-26 MDKIQELIIHMGLESNHMFILAMICCAMIIDFLSGVFAAKMNPKIDFQSRIGINGILKKI AALMLLIFFIPLAMTIPGNTGTGLLYVLYFGYLLMEIQSILENYQKIGIDVSLFQNFINR YSKSTMDNNKTNNSNEKEKKEEK >gi|284795494|gb|ADDQ01000055.1| GENE 9 5099 - 5626 689 175 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256962428|ref|ZP_05566599.1| ## NR: gi|256962428|ref|ZP_05566599.1| predicted protein [Enterococcus faecalis Merz96] # 1 175 1 175 175 320 100.0 2e-86 MKKSLFILGTILLTTIAVQTGIETYASNNSFNQEQIESKASKPKTQYSELEFDTHEEAKD NIQVIPEKSGIPVDLGNNITGYQEGGAGSRFITFHIKNYGVFIRTNSILGQDNVALSKEV AQILLSIEKYPETDRGLIRADFASGMMSITWASDTFVKSVTSSDLRVSIEKALTK >gi|284795494|gb|ADDQ01000055.1| GENE 10 5669 - 7849 2167 726 aa, chain + ## HITS:1 COG:BS_ybfG KEGG:ns NR:ns ## COG: BS_ybfG COG3409 # Protein_GI_number: 16077289 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative peptidoglycan-binding domain-containing protein # Organism: Bacillus subtilis # 1 618 2 623 732 475 44.0 1e-133 MDEMVLGTQKWLNKTYGNVSGFNKVPENGKTGWPTIYGLRRALQKEMGIQELSDNFGPTT ERYFKEKVEKQLNERFGAGIGNIVKIMQGGFWCKGINPYVSGTEAVDGLMTGLTTLAIKK FQEMAGLAPSGYMNAMLMKALLDMSAFALVPGGDKNIRSMQQSLNAKYNRYFGLLPCDGV YQRDTNSALIYALQAEMGMDENTANGFYGPGTTAKTPTLTVGSTGNFVKILQWALYVNGF NQSAVFSGSFTSYIAAEVENFRLFMNLPPYNTSADMTVIKGLLSSAGNTDRAASACDMAT QLTKQQAQLIKDNGYSIVGRYLTGSVGVGANKKDKNLTLEEIQAITSVGLSIFPIYQDGG WEESYFNEGNGLRDGSLAHNAAFKLGFPYGATIYFAVDVDILDGNIPGTVLPYIKKVKES LDANGMYKTGIYGTRNVCQQAIDAGFVEHCFVSDMSTGFSGNLGFPMPKEWAFDQFYEHS ELGFPIDKVAVSGRDHGTKAFSTTIGNLIQLETIKLLNALGKNFTIKDVGIKLDTPTQII SSPTLDVYFKSSASWTHKVDDSGMSISIKNGKIDTKVYVNPIKESLNSYKDLLKNYNENQ VDEMLNKLAPVIKNGYIETGFCARNNLIGTKLVIKKEIGDSENKGTLQLEIELYPKPLLP TDIKIPQPDYDKAYRDIKNGHVPQLNVEVILKGVLIGALAVVIIIGIASGAAELAGAITA FFAALA >gi|284795494|gb|ADDQ01000055.1| GENE 11 7957 - 8499 225 180 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256962426|ref|ZP_05566597.1| ## NR: gi|256962426|ref|ZP_05566597.1| predicted protein [Enterococcus faecalis Merz96] # 1 180 1 180 180 239 100.0 6e-62 MNSIIGEMDLTKYFILLIFPFFLLYIFKFFLNQSFVRKSNIPKRELKEQKINLIELQKKS FVYYSFLINIYFVLHLVMVIFLGMFLGSFYEYGYFTNQSNAISYAFLTLVTALIILLINL LVAILRIKFLHTDQGKLYVETHKNVFLLNSKQKIAWLSIHILSVILAGFNILLFLNSTVY >gi|284795494|gb|ADDQ01000055.1| GENE 12 8566 - 9141 334 191 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256962425|ref|ZP_05566596.1| ## NR: gi|256962425|ref|ZP_05566596.1| predicted protein [Enterococcus faecalis Merz96] # 1 191 1 191 191 310 100.0 3e-83 MTFDYNLKEDEYLKAIKLYTRKFTKTGKRKIRITYFAGLVLLVTSAYMFISIFKQYLSFK QSLPDYVVRELLNKLFTQGFGYILILIIYLVLGIFFLYSAYNYPSTKIINKNTDPKTLEP RKVKINDSGIVYWQANNEEDKKSHLWNDIEGVFETEEFYLMKIDKNKIFILPKRMISTKV QSDFIEKHVTK >gi|284795494|gb|ADDQ01000055.1| GENE 13 9415 - 10734 630 439 aa, chain + ## HITS:1 COG:no KEGG:llmg_0703 NR:ns ## KEGG: llmg_0703 # Name: tnp1675 # Def: putative transposase # Organism: L.lactis_MG1363 # Pathway: not_defined # 1 439 1 439 439 646 75.0 0 MSNTIKIPSTLQAAHKIKQNLEDQIRCITNQPEIFAQSPTDFSRNRKLSFETTLKIILSF GGQSLSSELLSYFDFTLQTPTASAFVQARSKIKIEAFKQLFYRTVPSSNQNKQYKGYQLL AHDGSDINIPYDENDPESHYTIGKFDKPVGSFHINALYDPLNKYYASVNFQKIRQLDERS SLCQMVDEFTFKKPTIIIADRGHESFNVYEHIRKSGQKFVIRVKDTRSNGFLKGFGLPQK GTFDKEINLWLTRRKTNKIKADKSYQFLRKKASFDYLPPDSKESYPVSLRVVRIKLSEDS YESLVTNLDSFTFKSEDLKVLYHLRWGIETSFRELKYALGLNQFHSKKLEFIIQEIYARL IIYNFSMEIAQVVALSAPLKQFYQLNFTQAIGICKRFFLDQTVNVEILIRRYLLPIRQNR SDQRNITKKKFVGFLYRIA >gi|284795494|gb|ADDQ01000055.1| GENE 14 10970 - 11059 135 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAKIGYSRVSSTEKILYNQLELLSTCNKN >gi|284795494|gb|ADDQ01000055.1| GENE 15 11324 - 11809 391 161 aa, chain + ## HITS:1 COG:no KEGG:p2METDI0018 NR:ns ## KEGG: p2METDI0018 # Name: not_defined # Def: hypothetical protein # Organism: M.dichloromethanicum # Pathway: not_defined # 1 142 3 145 462 98 39.0 8e-20 MYDCSKQLEKFYRKKVVLSAKEQNELREKRKLNIKRLKEGLSEYNSEKNKNFKIAEERIQ GSMAMHTITQNDRQDYDIDVGIVFEEDNLNELGSLATRNMVANALKRKTKQFAEVPEIKT SCVRLKYNSTGYHVDFAVFKRYKKILMMLITLMSILDQNGQ >gi|284795494|gb|ADDQ01000055.1| GENE 16 11929 - 12678 360 249 aa, chain + ## HITS:1 COG:no KEGG:Arch_1492 NR:ns ## KEGG: Arch_1492 # Name: not_defined # Def: hypothetical protein # Organism: A.haemolyticum # Pathway: not_defined # 89 246 263 425 435 105 35.0 2e-21 MPSGLIQTVICEENFNESYSRLDEVFYYTMKNIVSRLNVYLEVYAPVDNGRQLVNRDIDY QRMRNWKNRLEIQLDSLNVLFDDECTSEEALKAWGIFFEHSYWNELSDTVKKQSFTDTEE FIGDLYPVLEQFEVTVDCKVSGNGFNLMTFQKYLDKYAPRLNKFIPPKFKIECSIQSTTC PEYDKILWKVLNVGPEAEKRNDIRGQIEDRGSKITENTNFSGNHFIECYLIKDDVCVGIG HVDVPIGGV >gi|284795494|gb|ADDQ01000055.1| GENE 17 12680 - 13591 319 303 aa, chain + ## HITS:1 COG:no KEGG:Amet_0199 NR:ns ## KEGG: Amet_0199 # Name: not_defined # Def: hypothetical protein # Organism: A.metalliredigens # Pathway: not_defined # 79 281 47 244 244 115 33.0 2e-24 MRNYNYKMTVLKMLLLTLISCLFFVCIFMKNSIVSDLSNTFFGISIPYLLSSLIDLSDNE SWKNSQRKLKRAGLIHNETKIRISFAYLFRIKVDGKYFLVQNSRTKKYQPVGGAYKLTPE EAQYLSEEIPVENDDRIPIDTTTRGDYRLYVKNKDLRKFIKRFDETPYRENINNLSREFD EELFSTNILDKETFGDLSYKYCGRHITDVEYGNFFDCYELLLADIVEVILNDEQEQLFRD LMEKSDKRYMFATFSEIKTGGVKHGTSDLKDNIANHASKILSENSDILINKSKYKKPIKV KFD >gi|284795494|gb|ADDQ01000055.1| GENE 18 14695 - 15108 254 137 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256962422|ref|ZP_05566593.1| ## NR: gi|256962422|ref|ZP_05566593.1| predicted protein [Enterococcus faecalis Merz96] # 1 137 1 137 137 220 100.0 2e-56 MYKVDESENNPIIETVQEREKERDKKYFETLSVSGEGVVTKEDLEAYLWVSNGSGEVNSF QKGIRKQGVYPEKYHKEPIIISEYDLVDGIYTEKGDPSKYKVSWKKGYIFFEPIDKLSNK EEREKIFYPAKFTDEEE >gi|284795494|gb|ADDQ01000055.1| GENE 19 15478 - 17113 1252 545 aa, chain + ## HITS:1 COG:AGpT100 KEGG:ns NR:ns ## COG: AGpT100 COG1204 # Protein_GI_number: 16119860 # Func_class: R General function prediction only # Function: Superfamily II helicase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 532 1 537 836 486 45.0 1e-137 MVDFSKLKKIEKKQDVIDPIEIFRRIPKPEGINDLYSSQSEVLNAWFKNKDQKDNIIKLH TGGGKTMVGLLIAQSTMNELKEPVLYLTPTTQLVNQTFEKAKELGMSVVKYEKGEPLSQE FVNGKAIMIATYSALFNGKSKFGVQGKTSIQYVSTIIFDDAHAALPVIRDSFTLEISKAE DEKLYLELCSHFRKSFIEIGKQGTFDEVIDGKEDMVLEVPYWEFIESMTYVSSKVKEKDV FSWPLIRDRLSMCHAFISKSKFTITLIQPLLDIFPTFKNAKRKIYMSATISDDSDIIRTF NVSESAVNNPLTSSSVAGISERMILIPGLMDFPFDDLKDSFKLLNYVVENEYGAVVIAPS DEKSSRWESDVIFPHGSEEVNNIVNKMQKKIEFGPVVFSNRYDGIDLPGDACRLLIMDGM PIGTSSYEIFRAAALMGGDSITRMMTQRIEQGLGRGARGASDYCIDVLIGKDLTTWVSME NNFSYFTSATKAQIEMGKIVSQEVKSVSDLLDVIKQSLNRDSGWTNYHSEELVEYIDQDH IVKKD Prediction of potential genes in microbial genomes Time: Sun May 15 13:02:34 2011 Seq name: gi|284795493|gb|ADDQ01000056.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont137.1, whole genome shotgun sequence Length of sequence - 17864 bp Number of predicted genes - 17, with homology - 17 Number of transcription units - 10, operones - 5 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 32 - 679 606 ## EF0286 fibronectin-binding protein, putative - Prom 863 - 922 6.3 + Prom 946 - 1005 5.0 2 2 Tu 1 . + CDS 1034 - 1594 798 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) + Term 1596 - 1649 17.1 + Prom 1679 - 1738 4.1 3 3 Tu 1 . + CDS 1765 - 1902 179 ## EF0288 hypothetical protein + Term 1924 - 1969 10.6 + Prom 1911 - 1970 3.5 4 4 Op 1 8/0.000 + CDS 1992 - 2909 1224 ## COG0031 Cysteine synthase 5 4 Op 2 . + CDS 2923 - 4059 1497 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases + Term 4061 - 4107 10.1 - Term 4049 - 4094 13.7 6 5 Op 1 8/0.000 - CDS 4096 - 5526 1389 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 7 5 Op 2 1/0.000 - CDS 5553 - 6887 1116 ## COG1455 Phosphotransferase system cellobiose-specific component IIC - Prom 6915 - 6974 4.0 8 5 Op 3 . - CDS 7023 - 7784 627 ## COG1737 Transcriptional regulators - Prom 7807 - 7866 8.8 + Prom 7824 - 7883 10.5 9 6 Tu 1 . + CDS 8031 - 8573 444 ## COG0262 Dihydrofolate reductase + Prom 8576 - 8635 2.1 10 7 Op 1 . + CDS 8705 - 10072 1216 ## COG0168 Trk-type K+ transport systems, membrane components 11 7 Op 2 . + CDS 10093 - 11256 1397 ## COG0475 Kef-type K+ transport systems, membrane components + Term 11306 - 11363 8.3 + Prom 11258 - 11317 5.5 12 8 Op 1 1/0.000 + CDS 11384 - 11824 494 ## COG3682 Predicted transcriptional regulator 13 8 Op 2 . + CDS 11840 - 14326 3211 ## COG2217 Cation transport ATPase 14 8 Op 3 . + CDS 14348 - 14554 296 ## EF0299 copper transport protein CopZ + Term 14563 - 14602 9.4 - Term 14542 - 14598 19.1 15 9 Op 1 . - CDS 14599 - 15969 1169 ## EF0300 hypothetical protein 16 9 Op 2 . - CDS 15969 - 16358 390 ## COG1725 Predicted transcriptional regulators - Prom 16384 - 16443 6.3 + Prom 16350 - 16409 6.9 17 10 Tu 1 . + CDS 16508 - 17836 1422 ## COG3579 Aminopeptidase C Predicted protein(s) >gi|284795493|gb|ADDQ01000056.1| GENE 1 32 - 679 606 215 aa, chain - ## HITS:1 COG:no KEGG:EF0286 NR:ns ## KEGG: EF0286 # Name: not_defined # Def: fibronectin-binding protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 215 1 215 215 417 98.0 1e-115 MNPTIQPYQFNIIKEQVAVLLNTYTSVNDATTVKTVQALCVEKINGLFPEEHPAVTILLD KVMDRRLTRARAEKYLDELKETVLPFKEPSTPQVTKVFRKVKKLKIPEWENMDLRNNTYV GWNDAGTQKKFILAYRENKLIGVHGTLSPTIVKGVCSICQTITNVSMLLATTKSGGDGTY TKKGNYICHDSDTCNQQLTQPEYLEAFMENVKAVK >gi|284795493|gb|ADDQ01000056.1| GENE 2 1034 - 1594 798 186 aa, chain + ## HITS:1 COG:SPy1821 KEGG:ns NR:ns ## COG: SPy1821 COG0231 # Protein_GI_number: 15675650 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Streptococcus pyogenes M1 GAS # 1 185 1 185 185 258 74.0 4e-69 MIAASDLKAGMTFEQDGKLIKVMEASHHKPGKGNTVMRMKLKDVRTGSTTDTTMRPDEKV KKAHIDTKPVQYLYSQDDMAIFMDLETYEQYEVPTALIEEELKYLLENMEVKIQFYGEEV IGLTLPTTVILRVAETQPSIKGATVTGSGKPATMETGLVVNVPDFVEADELLEINTAEGT YLKRAK >gi|284795493|gb|ADDQ01000056.1| GENE 3 1765 - 1902 179 45 aa, chain + ## HITS:1 COG:no KEGG:EF0288 NR:ns ## KEGG: EF0288 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 45 1 45 45 69 97.0 3e-11 MTKKQASPFLETESCCCMVQNSAAYSFVMGKTSVISEKLPNTIPL >gi|284795493|gb|ADDQ01000056.1| GENE 4 1992 - 2909 1224 305 aa, chain + ## HITS:1 COG:HP0107 KEGG:ns NR:ns ## COG: HP0107 COG0031 # Protein_GI_number: 15644737 # Func_class: E Amino acid transport and metabolism # Function: Cysteine synthase # Organism: Helicobacter pylori 26695 # 1 304 2 305 306 395 67.0 1e-110 MIVQSILDTIGATPLFEFTSEQYPMPEGTKIYAKLEYLNPGGSVKDRLGVHLLKEAMKTG KINQATTIIEPTAGNTGIGLALAASQLGLKTIFVVPEKFSQEKQQLMQALGAKIVPSPTE QGIVGAIISAQDLAKEIPNSYVPLQFENPDNPAAYYEGLGPEIVQDLGGKITSFVAGLGS GGTFAGVGRYLKEQNSKTQLWGVEPEGSILNGGPAHGHEIEGIGVEFVPPFLKQIPVDGF YTISDEDGFFWVKQLAKKSALLVGSSSGAAFAAALREARRLPAGSTIVTIFPDGSDRYLS KNIYS >gi|284795493|gb|ADDQ01000056.1| GENE 5 2923 - 4059 1497 378 aa, chain + ## HITS:1 COG:L0181 KEGG:ns NR:ns ## COG: L0181 COG0626 # Protein_GI_number: 15672763 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Lactococcus lactis # 5 377 6 378 380 529 71.0 1e-150 MKFNTKLIHGGISKDTTTGAVSVPIYQTSTFEQNGVGQPKEYEYSRSGNPTRHALETLIA ELEGGSHGFAFSSGLAGIHAIISMFGPEDHILLGDDVYGGSFRLLDKVFVANGLSYTIVN ASDLSTIEAAIQPNTKALFLETPSNPLLKITDIEAAAKLAKKHQLLTIVDNTFATPYFQR PLALGADIVVHSGTKYLGGHSDVVSGLVVTNHPESAEKIAFLQNAIGAVLGPHDSWLVQR SLKTLGVRMAAHAQNAQKIAEFLEAHPAVATVYYPGLASHPGHEIAQKQMSGFSGMISFE LAKDEQVVPFVEALEIFTLAESLGGVESLIEVPAIMTHASIPKENREAVGIKDGLIRLSV GIEAVEDLLADLEKGLQA >gi|284795493|gb|ADDQ01000056.1| GENE 6 4096 - 5526 1389 476 aa, chain - ## HITS:1 COG:L22116 KEGG:ns NR:ns ## COG: L22116 COG2723 # Protein_GI_number: 15672399 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Lactococcus lactis # 4 476 3 478 478 773 76.0 0 MSILKNDFLWGGAVAAHQLEGGWDQGGKGVSVADVMTAGAHGVPRKITAGVLPDEHYPNH EAIDFYHRYQEDIQLFKELGLNCFRTSIAWTRIFPNGDEETPNEEGLRFYDALFDECLKN GIEPVVTLSHFEMPYHLVTKYGGFRNRQVIDFFVKFAEVCFTRYQKKVKYWMTFNEINNQ ANYEEDFAPFTNSGIAYQEGEDREAIMYQAAHYELVASARAVKIGHAINPDFQIGCMIAM VPIYPYSCNPEDMMMSVSAMQKRYWFTDVHVRGHYPSAIQCYLKRKNISLDVTKEDLTDL ANGCVDYIGFSYYMSFAVKGAEKAPTFDYNEAKDLVRNPYVATSDWGWQIDPMGLRYAMN WFNDRYELPLFIVENGFGAIDELEPDGTINDTYRIAYLREHIEMMKEAVAYDGIDLMGYT PWGFIDLVSASTGEMKKRYGFIYVDKDNDGHGTLERRKKKSFAWYQQVIATNGEEL >gi|284795493|gb|ADDQ01000056.1| GENE 7 5553 - 6887 1116 444 aa, chain - ## HITS:1 COG:CAC0386 KEGG:ns NR:ns ## COG: CAC0386 COG1455 # Protein_GI_number: 15893677 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Clostridium acetobutylicum # 5 426 7 444 450 410 51.0 1e-114 MNEWINEKLLPPVLKFVNTKAITALRNGMLYTMPFTIVGSVFLLLANFPVTAISEWVNAS GLAVYFNQAYGASFAIMSLFAVIGIAYSYVKSEGFEGLPAGMIAMVVFILFMSSEVKDAV SGAVVGNVINKDWTAGKGMITAIIVGLLVGVVYSWFLRHDIRIKLPEAVPENVANSFTAL IPASVIVTGAMLIFILLDKVFNTTFFDFIYEVLQSPLQGVTDSLGGALLLGFVIPLFWFF GVHGSTIVGGIMGPILQANSLENTEILKSGKDLTLANGGHIVTQQFLDQFLTVTGAGMTI GLVVFMVFFAKSAQFKQLGRLSIGPAVFNINEPIVFATPIVMNPIMAVPFIITPIVSSVV TYFALYTGLVPLFTAVQVPWTTPPIISGLLVGGWQAALLQVVVLTMSFFIYLPFAKKMDA LNYAEETNQPITEEILEKVEAQNV >gi|284795493|gb|ADDQ01000056.1| GENE 8 7023 - 7784 627 253 aa, chain - ## HITS:1 COG:L17893 KEGG:ns NR:ns ## COG: L17893 COG1737 # Protein_GI_number: 15672394 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 1 241 2 241 248 207 42.0 1e-53 MFDLEKVQTLNELEMLVYHYVLEHLHQIPQQTIRQLATSCHVSTSTILRFCNKMGYAGFS ELKYAVKEEAKQTQTFENFYDATVHVDAFLKKLNQETYYEMLRPAIQMIVQARHVAFTGI GTSGILGSYGSRYFANLNINSYSIADPFTPIPKRGFENTLALILSVSGETNEMIKQMTDF KTAGAKVLSITNNQHSTIARLADYNISYYMPDERSPFADKSVNTTTQIPVIALIELLAHQ ASQLLKELDETPS >gi|284795493|gb|ADDQ01000056.1| GENE 9 8031 - 8573 444 180 aa, chain + ## HITS:1 COG:BS_ywjB KEGG:ns NR:ns ## COG: BS_ywjB COG0262 # Protein_GI_number: 16080775 # Func_class: H Coenzyme transport and metabolism # Function: Dihydrofolate reductase # Organism: Bacillus subtilis # 1 176 1 173 174 122 39.0 3e-28 MAREVILFIAASIDGFIADKAGGVAWLEENIRGDEEDRSYDEMYEKIDTVVMGRTTYDQV TQELSPDVYFYEDKHSYIITSHPEPSTASRTFTKEDPVTLIRRLKEEDGAGIWIVGGPKV VQPLLAADLIDTFILTTIPLFLGEGIALYETMAQSIPVRLKQVYQKNELVYSIYQRENKN >gi|284795493|gb|ADDQ01000056.1| GENE 10 8705 - 10072 1216 455 aa, chain + ## HITS:1 COG:BS_yubG KEGG:ns NR:ns ## COG: BS_yubG COG0168 # Protein_GI_number: 16080162 # Func_class: P Inorganic ion transport and metabolism # Function: Trk-type K+ transport systems, membrane components # Organism: Bacillus subtilis # 2 455 5 445 445 285 41.0 1e-76 MKHQIKKRLYISPVQTIVLGFFLLIVVGTILLMMPFSAQAGQKTQWIDAFFVATSAVCVT GLSPLNTAEHWSPIGQVIIMILIELGGLGFLTVATIFFSLLRKKASLSVRMLYQEALNVS EVSGVFRLMKYIMKFAAIIQLLGAFLLSFQFVPTFGWKKGLFFSLFHAVSAFCNAGFDLL GDSMVPYQNSPYLLLVISFLIIAGGLGFIVWRDIFAMIKGYKNKIKHRVSIHTRLALTVT ATFLVLGTVIFYISEYRHFPADMSFWQRLVNSWFLSVTPRTAGFYSVDYLKMSNPGLIVT ILWMFIGGTSGSTAGGLKTTTFGVLFLQFRAIFKGKQRVEFHERTIPERVVLQAFTLFFL ATFLCVTASVILSFTETLPLKNGIEYIVFEVISAFGTVGLTMGLTPDLTVFGKLVIIFLM FVGRVGVYTVLLSLIKKGLESQSKVQYPKESVMIG >gi|284795493|gb|ADDQ01000056.1| GENE 11 10093 - 11256 1397 387 aa, chain + ## HITS:1 COG:L176399 KEGG:ns NR:ns ## COG: L176399 COG0475 # Protein_GI_number: 15673897 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Lactococcus lactis # 7 384 7 379 379 239 43.0 8e-63 MEFLGILCLILITTTLAGVACKRVGIPAVIGQLLVGIVLGPAMLNIVHQDVFVHDFSEIG VIMLMFIAGMECELELLKKYAKPSVMVAILGIVLPVGFTMLIGQLFAFSWKEAFFLGLVL AATSVSISVEVLRELNVLSSKEGATILGASVVDDIVVVIILSVAVGMIGASTGGNTEVSF IVKLIEQGLFFIGIFFLVRFIAPYLLRLSQKMNIGSSVIIMSLIICLGMAYLADLVGLSS VVGAFFAGIAVGQTDAKTEIDFNIEAIGYAVFIPVFFASIGLSVTFNTLGKDLPFILVMT IMAILTKLLGGAWGAKMVGFSNTSSLMVGAGMVSRGEMALIIAQIGYQSKLLSEAYYTSM IVVIILTTLVAPFLLKYFVKKQESALR >gi|284795493|gb|ADDQ01000056.1| GENE 12 11384 - 11824 494 146 aa, chain + ## HITS:1 COG:SPy1717 KEGG:ns NR:ns ## COG: SPy1717 COG3682 # Protein_GI_number: 15675568 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 6 144 1 139 144 100 35.0 9e-22 MAKDKLATITDAEWEVMRVIWTQGKTTSREVHTLLNEKKEWKSTTVKTLLSRLTDKGLVG TEKAGNKYIYYPLVEERRSVETVADELLAKVCSRKVGSVVETILTESQLSYDDLDRLEEL LKEKRKTAVESVPCNCIPGQCQCHLI >gi|284795493|gb|ADDQ01000056.1| GENE 13 11840 - 14326 3211 828 aa, chain + ## HITS:1 COG:CAC3655 KEGG:ns NR:ns ## COG: CAC3655 COG2217 # Protein_GI_number: 15896888 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Clostridium acetobutylicum # 1 817 1 814 818 941 63.0 0 MESKTFDIEGMSCASCAQTIEKATAKLPGMAKASVNLATEKLSVTYDQTEVTEEEIKEAV SDAGYKAISPAQQRTFAIEGMSCASCAQTIEKAVNQLSGVQQAIVNLATEKLVVSYDDHQ VTSAEIIKAVTDAGYQATEEVAAGATADQDREKKQKHIAEMWQRFWISAVFTVPLLYIAM GHMVGLPLPDFLNPMTHATTFAMVQLILTLPVLYVGREFFTVGFKALFKGHPNMFSLVAL GTSAAFVYSLYGTVMIFLGDTSFTMALYYESAGVILTLITLGKYFEAVSKGKTSDAIKKL MGLAPKTAHILHDGAEIEVPVDAVQLDDIVIVRPGDKIPVDGVIVSGSSSVDEAMLTGES LPVEKKVGDAVIGASINKNGSFQFKATKVGKETALAQIIQLVEDAQGSKAPIAQLADKIS GVFVPIVIGLAVLSGLAWFFLGQESWIFALTITISVLVIACPCALGLATPTAIMVGTGKG AENGVLIKSGDALETTHKIQTIVFDKTGTITEGKPVVTDILVADSALSEAELLTLAASAE QGSEHPLGEAIVGAAKERQLPLAEGSDFSAIPGHGIRVTINERVLLLGNIKLMKEEAIEL STFVQQADRLAEEGKTPMFVAKDGSFAGIIAVADTVKDSSQTAIARLHKMGIEAVMITGD NKRTAEAIAKQVGIDRVLSEVLPEDKALEVKKIQAEGKKVAMVGDGINDAPALAQADVGI AIGSGTDVAMESADIVLMRSDLMDVPTAVELSKATIKNIKENLFWAFAYNTLGIPVAMGV LHLFGGPLLSPMIAAAAMSFSSVSVLLNALRLKGFKPSTVKRTSGSQK >gi|284795493|gb|ADDQ01000056.1| GENE 14 14348 - 14554 296 68 aa, chain + ## HITS:1 COG:no KEGG:EF0299 NR:ns ## KEGG: EF0299 # Name: copZ # Def: copper transport protein CopZ # Organism: E.faecalis # Pathway: not_defined # 1 68 1 68 68 102 100.0 3e-21 MEKTVKIDGMKCDGCVQAVTEKFSGIDGVTNVAVHLADQTAVVTADREVSQDELNTTLAD TKFKVVSE >gi|284795493|gb|ADDQ01000056.1| GENE 15 14599 - 15969 1169 456 aa, chain - ## HITS:1 COG:no KEGG:EF0300 NR:ns ## KEGG: EF0300 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 456 1 456 456 823 99.0 0 MAVFFYFILVSVAFFMAFTMGIYANPHKNIILENTLPEDKLQDPSVQAIRKRYKKRLVQL AAVFSVLSLPLLFIPYDSILLFLFLLLLFSFIGSGYYLQIVYIRKMAALKMQNGWLLPKR PLLIDTQLVLNKNQKLISFWWFLPAIILTFAGGFYSLQTAIGSWILFLITVLMLSLFIGG YYFIARLPVKPLTSDSKINQQINDLFRHHWSVLMVLSALVFAPLTILPTFTIVIDYTVAM ALTFCYFILLFVYVGFLFYYLFSMRKKQDQFVLQAGDYRYGDDDQYWRYGIYINPKDPKI MVPDRIGMNLSINLGRPAGKIILAATGILTIAVLFFATVPMFINDFSSHAFQATIEKNQI ELSAPLAKTRSIPFNQITAVSLIDDLPQERIRTMGAATDSYLTGEFKVAGKPAYLLIYTK SHPILKIETREKVYYYTARDGQETTKIYQEIKAKLP >gi|284795493|gb|ADDQ01000056.1| GENE 16 15969 - 16358 390 129 aa, chain - ## HITS:1 COG:CAC0599 KEGG:ns NR:ns ## COG: CAC0599 COG1725 # Protein_GI_number: 15893888 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 1 124 1 125 125 104 44.0 4e-23 MLLEIDEQSEQPIYQQLIDQIIVGIAKGELVPNESLPSIRQLADEIGVNMMTVSKAYNKL KQSGYIVTDRRNGTKIAAKLPATAVWQQQLHERLELLLAESFLHQQSEAEIQALIQKIYQ NFDSKGRAL >gi|284795493|gb|ADDQ01000056.1| GENE 17 16508 - 17836 1422 442 aa, chain + ## HITS:1 COG:SPy1651 KEGG:ns NR:ns ## COG: SPy1651 COG3579 # Protein_GI_number: 15675522 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Streptococcus pyogenes M1 GAS # 1 442 1 443 445 561 61.0 1e-160 MTAIEPKLTEKFHQDFLNNNKQNALQRSVVKNGISASGESVQGAVNNVPVFSVDLATGKV ANQKQSGRCWMFAALNTFRHRMLNAFQLKDFELSQNYTFFWDKYEKSNYFYENIIATADQ PLTSRKVAFLLATPQQDGGQWDMIVSIFDKYGVVPKTAMPESSNSSNSRDLNNYLNKKLR KDATILRSLIEKGASAEEVQKNKEAMLQEIYNFLAISLGTPPETFDFEYRDEEKNYHLDQ NLTPQTFFEKYVGVNLHDYVSIINAPTEDKPFNKTYTVEMLGNVVGGKEVKYLNVEMAAF KKLAAAQLEQGESVWFGCDVGQSSTRDTGIMALDVYDMNDLFDIDFTMTKAERLDFGESL MTHAMVLTGVDIVDGQTTKWKVENSWGEKVGENGFFVMSDAWMDEYTYQIVVHKDLLTDE QKKAWEQAPTVLAPWDPMGALA Prediction of potential genes in microbial genomes Time: Sun May 15 13:03:00 2011 Seq name: gi|284795492|gb|ADDQ01000057.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont137.2, whole genome shotgun sequence Length of sequence - 45491 bp Number of predicted genes - 41, with homology - 40 Number of transcription units - 21, operones - 13 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 4/0.000 - CDS 18 - 638 643 ## COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family 2 1 Op 2 . - CDS 660 - 1634 1105 ## COG0346 Lactoylglutathione lyase and related lyases - Prom 1685 - 1744 8.9 + Prom 1733 - 1792 10.3 3 2 Op 1 12/0.000 + CDS 1922 - 2257 460 ## COG2076 Membrane transporters of cations and cationic drugs 4 2 Op 2 . + CDS 2254 - 2565 530 ## COG2076 Membrane transporters of cations and cationic drugs - Term 2608 - 2650 5.0 5 3 Op 1 1/0.000 - CDS 2661 - 3707 1155 ## COG3469 Chitinase 6 3 Op 2 . - CDS 3750 - 4334 720 ## COG3397 Uncharacterized protein conserved in bacteria - Prom 4424 - 4483 7.3 + Prom 4424 - 4483 8.2 7 4 Op 1 . + CDS 4608 - 5342 871 ## COG3884 Acyl-ACP thioesterase 8 4 Op 2 . + CDS 5392 - 6225 777 ## COG1801 Uncharacterized conserved protein 9 4 Op 3 . + CDS 6242 - 6778 600 ## COG4696 Uncharacterized protein conserved in bacteria - Term 6758 - 6793 6.0 10 5 Tu 1 . - CDS 6801 - 8153 1647 ## COG0527 Aspartokinases - Prom 8184 - 8243 5.3 + Prom 8251 - 8310 8.0 11 6 Tu 1 . + CDS 8340 - 9026 823 ## COG0637 Predicted phosphatase/phosphohexomutase + Prom 9042 - 9101 8.3 12 7 Op 1 3/0.000 + CDS 9212 - 10948 2107 ## COG4477 Negative regulator of septation ring formation + Term 10965 - 11004 8.4 + Prom 10991 - 11050 7.0 13 7 Op 2 . + CDS 11075 - 12220 1154 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes + Term 12221 - 12279 14.1 - Term 12211 - 12267 16.7 14 8 Op 1 40/0.000 - CDS 12273 - 12965 698 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 15 8 Op 2 . - CDS 12962 - 14443 1614 ## COG0642 Signal transduction histidine kinase - Prom 14583 - 14642 9.5 + Prom 14496 - 14555 9.0 16 9 Tu 1 . + CDS 14630 - 15607 1294 ## EF0374 putative lipoprotein + Term 15627 - 15681 14.6 + Prom 15643 - 15702 7.8 17 10 Tu 1 . + CDS 15792 - 16757 1210 ## EF0375 hypothetical protein + Term 16785 - 16824 6.2 + Prom 16828 - 16887 13.7 18 11 Tu 1 . + CDS 16976 - 18019 1153 ## EF0376 hypothetical protein + Term 18038 - 18082 8.3 + Prom 18090 - 18149 5.9 19 12 Op 1 . + CDS 18192 - 18995 993 ## COG0666 FOG: Ankyrin repeat 20 12 Op 2 . + CDS 19047 - 20258 1535 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases + Term 20259 - 20304 4.6 - Term 20242 - 20295 12.1 21 13 Op 1 . - CDS 20299 - 21111 788 ## COG0657 Esterase/lipase 22 13 Op 2 . - CDS 21086 - 22678 1060 ## COG2508 Regulator of polyketide synthase expression - Prom 22704 - 22763 6.1 + Prom 22668 - 22727 7.5 23 14 Op 1 . + CDS 22801 - 25812 4109 ## COG0074 Succinyl-CoA synthetase, alpha subunit 24 14 Op 2 . + CDS 25805 - 26638 526 ## EF0384 hypothetical protein 25 14 Op 3 1/0.000 + CDS 26648 - 27901 1466 ## COG0477 Permeases of the major facilitator superfamily + Prom 27927 - 27986 2.2 26 14 Op 4 . + CDS 28036 - 28974 1141 ## COG0549 Carbamate kinase 27 14 Op 5 . + CDS 28981 - 30201 936 ## COG1301 Na+/H+-dicarboxylate symporters + Prom 30204 - 30263 1.6 28 15 Op 1 . + CDS 30291 - 31352 1264 ## COG2055 Malate/L-lactate dehydrogenases + Term 31353 - 31405 1.1 29 15 Op 2 . + CDS 31418 - 32773 1670 ## EF0389 hypothetical protein 30 15 Op 3 . + CDS 32798 - 34021 1828 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases + Term 34035 - 34083 13.6 - Term 34017 - 34078 19.3 31 16 Tu 1 . - CDS 34159 - 35670 1094 ## LM5578_0478 hypothetical protein - Prom 35703 - 35762 11.4 + Prom 35656 - 35715 8.9 32 17 Op 1 . + CDS 35863 - 36975 1134 ## EF1091 von Willebrand factor type A domain-containing protein 33 17 Op 2 . + CDS 37001 - 37885 793 ## LKI_08020 hypothetical protein 34 18 Tu 1 . + CDS 38312 - 39670 1578 ## COG3883 Uncharacterized protein conserved in bacteria + Term 39696 - 39731 5.1 + Prom 39998 - 40057 10.3 35 19 Tu 1 . + CDS 40078 - 41205 1335 ## COG0620 Methionine synthase II (cobalamin-independent) + Term 41211 - 41255 11.5 - Term 41186 - 41251 11.2 36 20 Op 1 . - CDS 41257 - 42441 1252 ## COG0628 Predicted permease 37 20 Op 2 . - CDS 42457 - 42972 457 ## EF0397 hypothetical protein - Prom 42997 - 43056 5.6 + Prom 42757 - 42816 8.7 38 21 Op 1 . + CDS 43049 - 43150 97 ## 39 21 Op 2 6/0.000 + CDS 43165 - 43851 737 ## COG3819 Predicted membrane protein 40 21 Op 3 3/0.000 + CDS 43848 - 44792 1117 ## COG3817 Predicted membrane protein 41 21 Op 4 . + CDS 44808 - 45449 848 ## COG2039 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) Predicted protein(s) >gi|284795492|gb|ADDQ01000057.1| GENE 1 18 - 638 643 206 aa, chain - ## HITS:1 COG:lin0755 KEGG:ns NR:ns ## COG: lin0755 COG1853 # Protein_GI_number: 16799829 # Func_class: R General function prediction only # Function: Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family # Organism: Listeria innocua # 1 205 1 205 206 183 47.0 2e-46 MIHYNSNELSAKTAYKFLSGSIIPRPIAWVTTQDTATGIVNAAPFSFFNAAAAEIPLATL SILRPDKAPKDTARNILATKELVIHFVNEDVLTQMNQTSASLAPEISEIDTFGIETIASQ TVAVPAIKAAPIRMEARLHQYVPIANHEGQIITDLFIVEITDFYFDSAVFDEEHQYILPE KLQPIARLAGNDYTTLGEIREVRRPT >gi|284795492|gb|ADDQ01000057.1| GENE 2 660 - 1634 1105 324 aa, chain - ## HITS:1 COG:lin0753 KEGG:ns NR:ns ## COG: lin0753 COG0346 # Protein_GI_number: 16799827 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Listeria innocua # 7 316 7 316 319 412 62.0 1e-115 MNTQILGLHHVTAMTSSAEKIYHFFTDILGLRLIKKTVNQDDIETYHLFFADDAGSPGTD MTFFDFPGLPKGTKGTNTISRTSFRVKDDDALDYWVSRFNEYAIDHGEIQERFGKKYLEF EDFDNQRYQLISDEKNQGVAAGTPWKKSNVPSEHALIGLGPAFVTVENYEHLQLVLTEVL GFKLIDAEGSFHLFEVGEGGNGASIIVEHREDLPAAQEGYGNVHHLALRVADEEALRFWI EKINRLEFPNSGFVERFYFKSEYFLAATHVLFELATDGPGFLEDETYEHAGEKLSLPPFL EPKRAGIEEFVRPFDTSDANVQRN >gi|284795492|gb|ADDQ01000057.1| GENE 3 1922 - 2257 460 111 aa, chain + ## HITS:1 COG:BH0686 KEGG:ns NR:ns ## COG: BH0686 COG2076 # Protein_GI_number: 15613249 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Bacillus halodurans # 1 111 1 111 114 85 49.0 3e-17 MSKAWLKVIFGAFCEVIWVIGMKHSTTWWEILGTVIAIFISFYALIKAGEELPVGTAYAV FVGLGSAGTIVTDHFLFHTPLGIGKVLFLLLLLIGVIGLKMVTGNKEEETR >gi|284795492|gb|ADDQ01000057.1| GENE 4 2254 - 2565 530 103 aa, chain + ## HITS:1 COG:BS_ykkD KEGG:ns NR:ns ## COG: BS_ykkD COG2076 # Protein_GI_number: 16078375 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Bacillus subtilis # 1 102 2 104 105 84 46.0 3e-17 MSWLYLVIAGCFEIFGVGSIKLFTTKKDLRSLLILILAFSGSFLFLYLGMRQLPMGVSYA VWTGIGTAGGAILGMLLGESKDLRRIFFIFLIIVSVIGLKLIG >gi|284795492|gb|ADDQ01000057.1| GENE 5 2661 - 3707 1155 348 aa, chain - ## HITS:1 COG:lin1996 KEGG:ns NR:ns ## COG: lin1996 COG3469 # Protein_GI_number: 16801062 # Func_class: G Carbohydrate transport and metabolism # Function: Chitinase # Organism: Listeria innocua # 11 347 13 349 352 454 66.0 1e-127 MKLKKIIPAFLLLSTVAVGLWLTPTQASADAADTMVDISGKKVLVGYWHNWASKGRDGYK QGTSASLNLSEVNQAYNVVPVSFMKSDGTTRIPTFKPYNQTDTAFRQEVAQLNSQGRAVL LALGGADAHIQLVKGDEQAFANEIIRQVETYGFDGLDIDLEQLAITAGDNQTVIPAALKI VKDHYRAQGKNFIITMAPEFPYLKPGAAYETYITSLNGYYDYIAPQLYNQGGDGVWVDEI MTWVAQSNDALKYEFLYYMSDSLIHGTRGYLQIPNDKLVLGLPANRDAAGSGYVVEATPV AKTFDQLAKDGNPIRGLMTWSANWDVGQDVNGKSYNNEFATRYSNLVK >gi|284795492|gb|ADDQ01000057.1| GENE 6 3750 - 4334 720 194 aa, chain - ## HITS:1 COG:lin2611_1 KEGG:ns NR:ns ## COG: lin2611_1 COG3397 # Protein_GI_number: 16801673 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 8 193 7 191 294 169 47.0 3e-42 MKKSLLTIVLAFSFVLGGAALAPTVSEAHGYVASPGSRAFFGSSAGGNLNTNVGRAQWEP QSIEAPKNTFITGKLASTGVSGFEPLDEQTATRWHKTNITTGPLDITWNLTAQHRTASWD YYITKNGWNPNQPLDIKNFDKIASIDGKQEVPNKVVKQTINIPTDRKGYHVIYAVWGIGD TVNAFYQAIDVNIQ >gi|284795492|gb|ADDQ01000057.1| GENE 7 4608 - 5342 871 244 aa, chain + ## HITS:1 COG:SP1408 KEGG:ns NR:ns ## COG: SP1408 COG3884 # Protein_GI_number: 15901262 # Func_class: I Lipid transport and metabolism # Function: Acyl-ACP thioesterase # Organism: Streptococcus pneumoniae TIGR4 # 1 242 1 239 245 177 39.0 2e-44 MGKKHTSSYEVAYYDGDFTGAMKIPALLAVVIKVSEEQTELLGRDAAYVAQFGLGWVITN YEIEIHRLPKVGEKVAITTQAMSYNKYFCYRNFWVHDEEGNECVFVKSTFVLMDQKNRKI SSVLPEIIAPFDSEKITKIYRHEKIEKVAEGNFLPYRVRFFDIDGNQHVNNAIYFNWLLD VLGYDFLTTHQPKKILVKFDKEVEYGQEVESHYEIVEQENQLKTRHEIRIDGQTYCEANI DWTN >gi|284795492|gb|ADDQ01000057.1| GENE 8 5392 - 6225 777 277 aa, chain + ## HITS:1 COG:lin2505 KEGG:ns NR:ns ## COG: lin2505 COG1801 # Protein_GI_number: 16801567 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 277 2 279 281 261 46.0 9e-70 MIRLGLTSFSEHDYLTGKKRATLYEYASHLPLVEMDTAYYGIPPKERVAEWVKAVPENFR FVMKVYSGISCQGEWQTYYASEEEMITAFLESMAPLIESKKLFAFLVQFSGTFGCTKENV AYLQKIRHWFKDLPIAIELRNNSWYQPNFVKQMLQFMKENQFSLVIVDEPQIPTNPVPFY PYVTNPNLVLFRFHGRNAAGWLANDAEWRKKRTLYHYNTQEIADLSEAVLKMSQEAKEVG VIFNNNSGGDAAENALQMQKVLNLSYDDLNPKQLDLF >gi|284795492|gb|ADDQ01000057.1| GENE 9 6242 - 6778 600 178 aa, chain + ## HITS:1 COG:L143879_2 KEGG:ns NR:ns ## COG: L143879_2 COG4696 # Protein_GI_number: 15672719 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 14 170 21 176 184 170 56.0 1e-42 MSEKQSPYEMACAFHEVFNPQQPEQPTAFSPELASRRAEFKVEELVEFLYSAADNDQVLF QQLVNGLKKSVDKAEQKVLAKGKPVSDPLVEEVDALVDLLYFTYGSFCLMGVNPTKIIEI VHQANMGKLFPDGQPHYDPETNKVLKPENWEQDFAPEAKIKAEIQRQLKITETNEKDE >gi|284795492|gb|ADDQ01000057.1| GENE 10 6801 - 8153 1647 450 aa, chain - ## HITS:1 COG:SP0413 KEGG:ns NR:ns ## COG: SP0413 COG0527 # Protein_GI_number: 15900332 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Streptococcus pneumoniae TIGR4 # 1 448 1 448 454 563 62.0 1e-160 MNVVKFGGSSLASAPQLQKVLQIVKEEPRRTFVVVSAPGKRTPQDIKVTDLLIQYYQRYL NNEDIESTISAIIRRYEDLFDELHLDKAVLADIAISIRQLATLPKENNAFLFDYFLASGE DNNAKVVASFFKQNGLDARYISPKELGLLVTPEPGNARILPKALEKISVYRETQQILVIP GFFGYTETGEICTFSRGGSDITGSIVAAGVQADLYENFTDVDGIYVAHPGIIEQPQTIQE LTYREMRELAYAGFAVLHDEALMPAYRANIPVVIKNTNNPHHPGTLITTSRKVKHGPVVG IASDQGFASIYISKYLMNRELGFGRRLLEVLEKLALSYEHMPSGIDDITIVLREDQLTTE IENRLMAQLQEVLAPDELRITHHLSMIMIVGEGMRQRIGVTAESTMALAKEKINLEMINQ GSSEVSIMFGIKKEQEEKAIKALYRTFFHD >gi|284795492|gb|ADDQ01000057.1| GENE 11 8340 - 9026 823 228 aa, chain + ## HITS:1 COG:L150333 KEGG:ns NR:ns ## COG: L150333 COG0637 # Protein_GI_number: 15672725 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Lactococcus lactis # 7 219 5 217 222 175 42.0 8e-44 MTESKTAIIFDMDGVLVDSEAYYYERRKAFLAEFDLTIEGLTLPELVGADMRSLWQKIEQ VNKKELDIAFLNEQYIAYKKAHPIDYLAVLDENAKRVLQFLKRQGYKIGLASSSTKDAIE EVLTVGQLSSYFDAVVSGEDFEESKPAPDIYLHTLQELAVAPQECIAIEDSEKGIASAKE AGLEVWAMRDEHFGMDQSQADAFLTQLSDICKKISENRIDESSESTPS >gi|284795492|gb|ADDQ01000057.1| GENE 12 9212 - 10948 2107 578 aa, chain + ## HITS:1 COG:L7722 KEGG:ns NR:ns ## COG: L7722 COG4477 # Protein_GI_number: 15674133 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Negative regulator of septation ring formation # Organism: Lactococcus lactis # 20 574 19 574 576 396 40.0 1e-110 MKNNWIIILVLVIVIIAAVLYLIGYFMRKKNQEQLDELEVRKEALFDLPVFEEIDDIKKM HLVGQSQNSFREWNQRWVELSTRSFAELESQIYEVENQNEIFRFMKAKKAVVEANETMTE MEAEVEVIRNGLKELRESEERNSLEVQKALDVYEELSKSLKDDKASFGPAYSEIQKQLRN VEIEFTQFVTLNTSGDPIEAREVLEDAERHTYELEDLMKRIPPMYEELNETFPDQLKEIE EGYNQLLVDDYVFPEQNFAEEIQHAKKRVENSMADLEKTEIAAVEVANRDTATAIDALYE VMEREIEAKKYVVTNQKIIDDYISHSLKNNRQLMIELDHVSQSYTLNNNELGRSRGFQTE IEEIIRRQKDLEPRMKEHTVPYSEIQAFYKECYKILDDIENQQLEIDASLKELRKGEKVA QEKVDEYEFRLRSIKRYVEKQRLPGLSADYLEFFYVATDRIEDLSRALNKMRINMDEINR LCDLCEDDLELLDKKTKDLVNAAALTEQMMQYANRYRHTHENIRAALDKSMYLFSTEFRY QDALDEIGTALEAVEPGAFKRIEDFYFKNINNPNLTAI >gi|284795492|gb|ADDQ01000057.1| GENE 13 11075 - 12220 1154 381 aa, chain + ## HITS:1 COG:L122222 KEGG:ns NR:ns ## COG: L122222 COG1104 # Protein_GI_number: 15672519 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Lactococcus lactis # 1 381 1 380 381 478 62.0 1e-135 MIYFDNSATTPIYPQALDTYVKTSQRIIGNPSSLHDLGSQANRLLQQARKQIAELINVSA NEIYFTSGGTEGDNWVLKGTAIEKREFGNHIIISAVEHPAVTETAEQLVELGFELSYAPV DKEGRVKVEELQKLIRKETILVSVMAVNNEVGTIQPIKEISEVLAEFPKIHFHVDAVQAI GKVNYSEWLTDRVDFATFSAHKFHGPRGIGFMYWKQGKRLAPLLTGGGQENNQRSGTENV PAIVAMAKALRLHLENEQQRPQHVATLRSYLLKALEEFQNVTVFSQDNEHFAPHILCFAL KGIRGEVLVHALEEKQIYISTTSACSSRKKMASSTLYAMHVPGELATSAVRISLDESNTM AEIEQFMIVFNQLYQKFSRVN >gi|284795492|gb|ADDQ01000057.1| GENE 14 12273 - 12965 698 230 aa, chain - ## HITS:1 COG:CAC0321 KEGG:ns NR:ns ## COG: CAC0321 COG0745 # Protein_GI_number: 15893613 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 5 228 4 228 230 249 57.0 3e-66 MKPHVLIIEDDPSIADLQKDYLEINDMTVTIEHDGKKGLEAALNEPFDLIILDVMLPTMD GFEICRAIRKKKQTPIMIVSAKKEDIDKIRGLGLGADDYIIKPFSPNELVARAKAHMNRY QLLSKAEQPPQLLKINEIAVDTAAHKVFVLENEVIFTSKEYKLLVFLMEHPNRVWNKEEL FESVWGFDALDTEVSTVVVHIKRIREKLKKANLSDSPIETLWGSGYRFNR >gi|284795492|gb|ADDQ01000057.1| GENE 15 12962 - 14443 1614 493 aa, chain - ## HITS:1 COG:CAC0317 KEGG:ns NR:ns ## COG: CAC0317 COG0642 # Protein_GI_number: 15893609 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 149 488 157 493 498 206 37.0 1e-52 MTIKRRFFISYISAIIITLASVLAVLSLASYITLGTVPSLPQAYRMMNKQRPLTANEEES YLALDQLLKKSPKLLDTPLSKELKETIQTIEAKGLSVIIRKNARFPYYSDNLVEKSLSVH IPNYEMNNIMPTGTLDNAGRLYHYVKSDFHYLDGSNGSFIVLKRESSLFEFFTRWIIWMI LLIILVAIAAAWLINKRLTKTTIEPLEALEKATKTLGKDAQKENPFTPTSHQTVSTEVKQ LQLSFEQMWQDLEEANAEREKYEANRKELIANISHDLKTPITSIIGYVEGLMDGVANTEE KKQRYLTVIHEKSLGLNDLIEELFLYSKLDLDRAVFTMEKTNFTRFIAHILEEYRLEQEL VITSVLPTEALYVQMDPTQMNRVITNLIQNSIKFADPTKEQLAFTISLTHNQTDLVLTIT DNGIGIDKKELPYLFERFYRVDKSRTPTVKGSGLGLSIVKQIIDYHQGTITVTSKKGDGT NVIITLPLLEDEK >gi|284795492|gb|ADDQ01000057.1| GENE 16 14630 - 15607 1294 325 aa, chain + ## HITS:1 COG:no KEGG:EF0374 NR:ns ## KEGG: EF0374 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 325 1 325 325 502 98.0 1e-141 MKKKKVFSTITLLTFSTLLIAGCAGGANSATDKSSAASSSTAVSSSAEPAKEQSKGQELT EILSSTDWQGTKVYDKNNNDLTAENANFIGLAKYDGETGFYEFFDKETGETRGDEGTFFV TDDGEKRILISDTQNYQAVVDLTEVTKDKFTYKRMGKDKDGKDVEVFVEHIPYSDEKLTF TNGRKDLETETGKIVTSEPGDDILGATLWNGTKVLDEDGNDVTEANKMFISLAKFDNKTS KYEFFDLETGKTRGDFGYFQVIDNNKIRAHVSIGDNKYGAALELTELNDKRFTYTRMGKD NNGKEIKVFVEHEPYEGDFTPDFTF >gi|284795492|gb|ADDQ01000057.1| GENE 17 15792 - 16757 1210 321 aa, chain + ## HITS:1 COG:no KEGG:EF0375 NR:ns ## KEGG: EF0375 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 321 1 321 321 582 99.0 1e-165 MKKKVLSSITLVTLSTLLIAGYASPAFAGHAANPNSATANLGKHQNNGQTKGDKATKILS GTDWQGTRVYDAAGNDLTAENANFIGLAKYDGETGFYEFFDKNTGETRGDEGTFFVTGDG TKRILISRTQNYQAVVDLTEVSKDKFTYKRLGKDKLGNDVEVYVEHIPYHGKKLAFTNGR EALTNQTGKIVTNKSGDKILGTTLWNGTKVVDKNGNDVTAANQNFISLAKFDPNTSKYEF FNLQTGETRGDFGYFQVVDNNKIRAHVSIGTNRYGAALELTELNNDRFTYTRMGKDNAGN DIQVFVEHEPYQGTYHPAFTF >gi|284795492|gb|ADDQ01000057.1| GENE 18 16976 - 18019 1153 347 aa, chain + ## HITS:1 COG:no KEGG:EF0376 NR:ns ## KEGG: EF0376 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 347 1 347 347 633 96.0 1e-180 MKKKIVGTITLLALSALLVGGAGGALTAEAYVPQSVDNPNNLGDLPEYLRSVGIRQDEML SEKDWAGQRVYDKNGTDLTAENQDLLHAIKFDATTSFYEFFDKETGESTGDEGTFFMTAG ITDVSRLVLISETKNYQGVYRLKTLYQDTFTYSQTGKDKAGNDIEVFVENKATSGPVYGR PQPYPNNRPRTLEFTNGRRAMTEQTGQIDVNRQGDEIIGKTSFDGTPQLLWNGTKVVDKD GNDVTSANQNFISLAKFDQDSSKYEFFNLQTGETRGDYGYFKVGNQNKFRAHVSIGTNRY GAVLELTELNDNRFTYTRMGKDNEGNDIQVYVEHEPYQGTFNPEFTF >gi|284795492|gb|ADDQ01000057.1| GENE 19 18192 - 18995 993 267 aa, chain + ## HITS:1 COG:PA2498 KEGG:ns NR:ns ## COG: PA2498 COG0666 # Protein_GI_number: 15597694 # Func_class: R General function prediction only # Function: FOG: Ankyrin repeat # Organism: Pseudomonas aeruginosa # 75 263 19 204 210 148 44.0 1e-35 MNKKILMGLLSVVTIPLLAACQGGETPSAASKNSQTVTTQSSAKTESTSTTRSVAQTTSK EEVKEPMKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEI AKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAA EKGHIDNVKLSLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIK DNSGRTAMDYANQKGYTEISKILAQYN >gi|284795492|gb|ADDQ01000057.1| GENE 20 19047 - 20258 1535 403 aa, chain + ## HITS:1 COG:ECs0373 KEGG:ns NR:ns ## COG: ECs0373 COG0402 # Protein_GI_number: 15829627 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Escherichia coli O157:H7 # 2 401 53 455 460 228 35.0 2e-59 MNYWLKNVRIETGYQKEGDWLSGTVTKEVAIEVTDGVFTKIIPNEELVEEPGLTIIDGHH QLILPGLIEKHCHFDKSKLGVPWYPVTPAKSIVERVEAEIPYLDSLELSLTERANHLIDL ELSYGATAFRTHVDVEPMTDLRYFDEVQALAQTKPFAVEIVVFPQHGLLRSDSVELVDQA LAKGADFIGGVDPYSLDGDYKKSLAETFRLADKHGVGVDIHLHDRHEAGTTTIKEIIRLT KEYGLQDKVFISHAFGLNDFIGEERAEVYDALAAEKIHINSSVPITPNTIPPIMELLRHG VNVHLGCDNIYDCWSPYGDGSLQEKLARLGELFNVKDQDALTQLLGLVTDGVTTLDEQGQ ANWPQVGAEATYLLTEAECAAAFVARQTPVEISVVKGTTLYQK >gi|284795492|gb|ADDQ01000057.1| GENE 21 20299 - 21111 788 270 aa, chain - ## HITS:1 COG:SA0310 KEGG:ns NR:ns ## COG: SA0310 COG0657 # Protein_GI_number: 15926023 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Staphylococcus aureus N315 # 26 267 32 269 275 103 28.0 4e-22 MKNNQTLANGATVTIYPTTTESTNYVVYLHGGGMIYGTKSDLPEELKELFTSNGYTVLAL DYLLAPNTKIDHILGTLTETFQLLNEEIIQNQPFGLCGRSAGGYLMLQLTKQLQTLNLTP QFLVNFYGYTDLEFIKEPRKLLKQAISAKEIAAIDQTKPVWDDPFLSRYLLYHYSIQQAL LPHFYGLPENGDWSAYALSDETLKTFPPCFSTASSSDEEVPFRYSKKIGRTIPESTFKAV YYLEHDFLKQTKDPSVITLFEQLDSWLKER >gi|284795492|gb|ADDQ01000057.1| GENE 22 21086 - 22678 1060 530 aa, chain - ## HITS:1 COG:BS_yunI KEGG:ns NR:ns ## COG: BS_yunI COG2508 # Protein_GI_number: 16080295 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Bacillus subtilis # 1 520 1 528 531 103 22.0 6e-22 MKLRELLSIGDLKKGKILTKEIGLDNEVDSAMVLEAIDIENWSRKNQLILTSFYALHDLP EKELENFFVKMRRIGISGLILKTDRFIKMIPEWFIELCFNYEIPLIKITQDISYEKILFT IYEPLLNYQSHVLRTYYDVRQRFTKLERHYPTVETIMQEFYDIIKLPFALKMLDKHLEIS DGDLPHDAIVLSREKLKNSEFTKNDYSLLTLYSHANPKKQLALEVSIFNSYSTNCLLLVY LQDEKVKETDLVIIENAIDVLQEKFNTENLLKKERYTRLNNLADAILQNTPQNPDELNSL LREVQMQELDSYQAIAFSTKDTNTQLMKERIIALLRTLRVKSIFFDQLNYSAVLFNFNES DGKITKLQLSRLLAELLEENDTLTVAVSSLKSREGIKELLIECLDILRFNETFYNGPIVT LADIGVFKNFIREDQLENLDELIPRALYQLAENNYDLFETLYSFFQNNRNYKQTSEAMFL HSKTIRYRLNKVEQLLDIDLANPLQLLNYEIATYIIKMRRRALEKQSNTR >gi|284795492|gb|ADDQ01000057.1| GENE 23 22801 - 25812 4109 1003 aa, chain + ## HITS:1 COG:ECs0580 KEGG:ns NR:ns ## COG: ECs0580 COG0074 # Protein_GI_number: 15829834 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, alpha subunit # Organism: Escherichia coli O157:H7 # 1 579 1 555 555 369 38.0 1e-101 MLHTVILKNNYQDSINLMLLTNKINALDGVTMSQIMMGTDANKDILNNTNLLTDEANSAS ANDMMIVVDSEKENIMEEVMPAIDEFLDDLSAKGTSEEAQAATSWSEAFDLLPEANVALF SIPGEYGAPEMERALKNDLHVFSFTDNVSIEDEVRLKKLAHEKGLLMMGPDCGTGIISSI PIAFTNVVSPGNIGVVGASGTGIQEVTTIIDRLGGGVVHAIGTGGRDLSDKVGAITVKDA IVALENHEPTDVITVISKPPAKEVRDEVVELLQSISKPVVAIFLGEKPTSHEGKVYLAHT LEETAKIAVDLANDVAVKKNYFEALAKPAVPTLPEDKVVKGLYSGGTLASEAGMLISEAL DLGGLVKAEGYVLKSHGYEVIDLGDDMYTQGRPHPMIDPDVRIEKIREYAQDEKTGIILF DVVLGYGAHEDMVGALLPAIEEARATAKEAGRDLYFVATVCGTTKDPQNYQSSVDRLKEG GVLVAESNAKAVQLALLLKGIEISEDDKEVVAYNGPTVDVPKPGEKVMELLTTKPRIINV GLQSFTESIVDYGGETVQFNWRPRANGNKKMIKILDALEDYSEQIEAENHKVTDKIKNAQ PFLVDVVPAKSVIPELNDDAQKTLLHAGPPIQWSEMTGPMKGACIGAALFERWADNEEDA LKIFEAGEVRFIPCHHVKAVGPMGGITSGNMPVFVVENRLEGNEAYCILNEGIGKVLRFG AYSQEVVDRLDWIKDVLGPTIAKALKLSEEGLNLNVLIARSITMGDEFHQRNIAASLNFL KELSPLIIKTDIPEDQKYEVIKFLADTDQFFLNVMMATGKAIVDGARKDTNGTIVTTMTR NGVNFGVRIAETGDQWHTAPVNTPKGLYFTGFSEEDGNPDVGDSAITETVGVGAMAMVAA PGVTRFVGAGGFEDALATSNEMAKICEGHNPTFSIPTWDFQGTCLGIDIRKVVELGITPI INTGIAHKNAGVGQIGAGTVRAPLGCFEKALEAYAEKLGITVE >gi|284795492|gb|ADDQ01000057.1| GENE 24 25805 - 26638 526 277 aa, chain + ## HITS:1 COG:no KEGG:EF0384 NR:ns ## KEGG: EF0384 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 277 1 277 277 467 100.0 1e-130 MNNQLVISDYIFPIHQYGKMGTIHSVFERSFNLKVQDQLINVANFHNYLSSFGMFLPDQL FQEIFPYVQQGNKVKITENQLTFYSTVGVKTIQLTPAEVVSLNITHFKLEKDQLRLLRDR LLARNLERRIGLPLDERAKHIFKKMSQKQKVWTLSEWQEVTNYLIGRGKGLTPSGDDILV AYQTILFILADERAAALAATLSAANLSTTDVSKGYIASSAKGYVNSLLYQLLLDLENHRD NRVDENIDRIIQIGHSSGKDMSFGMLLALQSVELDEK >gi|284795492|gb|ADDQ01000057.1| GENE 25 26648 - 27901 1466 417 aa, chain + ## HITS:1 COG:STM0520 KEGG:ns NR:ns ## COG: STM0520 COG0477 # Protein_GI_number: 16763900 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 16 405 11 399 415 219 34.0 9e-57 MENSKKNQAVQVSNSYWIKVVAIFFVGWILMYATRTIFNPVMGVIGEQFGLSNTQLGLAN SIFFLTYAVAQIPFGMIGDKIGRKLVIAVGFIVLAISTYFSGLATTFVMFLVIRAIAGIG QGAYYGPQYALSTEAIPASKRTIGNAIINSGMAFGTSGGYLLSSKLVLENGEHWSKPFFI MAIPTFIVGILFYTILKEKVIRPGEEAARAAAEEGPQEKISLKEIFSNRNLLAAFILCFT SIYANFVIITWLPQFLIAERGFTGASVGFISSLVPWASIPGALIFARLNDKTGATKKLVF TLVPLAILSVFAIAFVTNRTLLISVLILYGLTGKLALDPIMVTFVTKHAPKAALGTTLSA YNFIGMSGSILAPYVTGYLADTAGSMQVGFYLSCVLLVIGLLAFAFLAKDESKPKLG >gi|284795492|gb|ADDQ01000057.1| GENE 26 28036 - 28974 1141 312 aa, chain + ## HITS:1 COG:L92850 KEGG:ns NR:ns ## COG: L92850 COG0549 # Protein_GI_number: 15674015 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Lactococcus lactis # 5 308 6 312 314 305 53.0 8e-83 MSLNVIALGGNAILDTDPTDEGQKAVVNHAAKYIAEFVAKGEQVIVCHGNGPQVGNLLLQ QKAGESEKNPALKLDTCVAMTQGSIGYWLQNALTNEFEKRNIAKPVISVVTQVRVDKEDP SFKKPSKPIGPFYTKEEADAEAAKDGSTYVEDAGRGYRKVVPSPMPKEIVEKEAVRALVE ADVLTICSGGGGIPVVAEDGQYVGVEAVNDKDFSARVLAENVDADRLIILTGVDNIYINY NQPDQKALEQISVAEAEEYIKEGHFAAGSMLPKIEAALDFVKGDDKRKAIITSIENLENI DKEAGTVISQKG >gi|284795492|gb|ADDQ01000057.1| GENE 27 28981 - 30201 936 406 aa, chain + ## HITS:1 COG:DR0656 KEGG:ns NR:ns ## COG: DR0656 COG1301 # Protein_GI_number: 15805683 # Func_class: C Energy production and conversion # Function: Na+/H+-dicarboxylate symporters # Organism: Deinococcus radiodurans # 1 398 1 407 431 187 32.0 4e-47 MKKPSMITQIAIAVVVGILVGLLIPASGNYLKIVGDVFLRLMQMAIPILILGQIVQAVGS INPKELTSLGGRTIAVFGISSLAAALWGVLMAVIFNPGYGVKMTGFQDASIKAQEISITD TILNFVPKNIFDSLTQGSIIQIIVFALFFGLALNKYLQSHPETQLFQIIVDFNEVIITVI RYVMYLAPLGIFALIASTISHLGLQIILPLVKYLLVYGLGTILFLGIWILVITLYCKVSP LRLITNMKNMSVMALATTSSAITLPVALEETETKLGLSKRITNLVLPLGMSLNSNGSAMH MAFTVMTIAQMYQLEFDITKMIYLAITATFVSLANAVVPGAGLVSLAVIVPQMGLPIESI AIFAGVEWFVGMLRTILNVNSDVYSAILVAKSVDEIDDTVFNSSNK >gi|284795492|gb|ADDQ01000057.1| GENE 28 30291 - 31352 1264 353 aa, chain + ## HITS:1 COG:ylbC KEGG:ns NR:ns ## COG: ylbC COG2055 # Protein_GI_number: 16128501 # Func_class: C Energy production and conversion # Function: Malate/L-lactate dehydrogenases # Organism: Escherichia coli K12 # 7 353 3 349 349 404 55.0 1e-113 MEEMVVVTPEKLEKLMKQKLEAAGLHSEHAEEVARHLTFADASGIHSHGAVRMDYYAERI AKGGITIDPELSFEKTGPSTAIFHGDNGVGQFVCNEALAAAVELAKESGLAYVGVSQTSH SGTLSYYVKKAAEQGMVALSMCQSDPMVVPFGGTSNYFGTNPIAFAAPRAGHEPVVFDMA TTVQAWGKILDARSRDVEIPDTWAVDEKGQPTTDPYEVRGLLPISGPKGYGLMMMVDVLA GSLLGLPFGKHVSSMYADLTEKRNLGQMFLVIDPSRFTDSERFKENINQMVEELHSVPTA EGFQQVYYPGEIGQLNYQKAMSEGIEIPQSIYDYLVSEIVHYDKYGGQGAFAK >gi|284795492|gb|ADDQ01000057.1| GENE 29 31418 - 32773 1670 451 aa, chain + ## HITS:1 COG:no KEGG:EF0389 NR:ns ## KEGG: EF0389 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 451 1 451 451 662 99.0 0 MKKSSKVALIFAFLVSIFVPVAAFADEIGDVVAPTGIMALVVIIPLIVVLVLLFMKVDMI IAGLIGGVLAMLIGGIGLEEANKQMLEAIPMMLGITVPIINSAVAMAVFKAGSYSAALTL AKRGTKGKVEYVSAFIVILLAAATYMSGIGGGSAMVIAPLAFAAVGVVPELIAAMSLAAA VSFTTSPASLESSIVSKLGDISVGSYVSTMRPYWLFFVALAIVLAFWGTKHRNVGFKESA DDEFDKKSNGELFKITLPAIFLLFAVIFGPIVNDLIGFAFFTPLVYMILTLVLIFLCTDF SMNKSVEAMVDGSTYILTRLFQVGIFLAFINVIAETGTFAVIAGVAENAPAFIVVPVAIL TGILIGIPAGAYVGSVLTLVLPVAVSLNFPPLALGFVAMGVGLGSQMSFVNITMQALSSG FQIPILDVVKGNVKWLSIASVLLLVIGLIFG >gi|284795492|gb|ADDQ01000057.1| GENE 30 32798 - 34021 1828 407 aa, chain + ## HITS:1 COG:SMa2371 KEGG:ns NR:ns ## COG: SMa2371 COG0402 # Protein_GI_number: 16263735 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Sinorhizobium meliloti # 2 403 3 407 432 241 34.0 2e-63 MDLLIKQVRLQDGEALQDVAIKEGKIIEIAPVITGDAKEVIEADGRVLIPGFVESHLHLD KALIADRKPNKSGTLKEAIEVTAELKPTFTEEDIYDRAKRALEMLIVHGTTALRTHAEFD PAQGFTGFKTIMRLKEEYKELIDMQVVAFPQEGIFKAPGTEQMMYEAMDMGADVVGGIPY NDAPAKEHIDLVFEIAKKYDKDVDLHQDFADEADDMSIEYLCEKTIAEGYQGRVSVGHLT ALHALPEAELAPIIAKMAEANISVMALPATDLHLGARGDQYNVRRAVTPIRKLRDGGVNV CIATNNIRNAFTPYGTGDIVQTAMLAIPVGHLGGADDLKTVLPMVTTSPARAMGLEGYGV AVGNKADLVLLDTKVVEHAIIDIPERLYVIKNGRVTVKTDKKVEIIR >gi|284795492|gb|ADDQ01000057.1| GENE 31 34159 - 35670 1094 503 aa, chain - ## HITS:1 COG:no KEGG:LM5578_0478 NR:ns ## KEGG: LM5578_0478 # Name: not_defined # Def: hypothetical protein # Organism: L.monocytogenes_08-5578 # Pathway: not_defined # 18 503 19 495 495 93 21.0 2e-17 MEILDTFFGSEVKKELDLLRLLYHKKNFIRIETLSQLLQMDRRSINKYYESLISKPYVLA NNCSHIFSAERGKGYCFMGSKKEYKILTKQILQSSPYFTLLEKLFFESNVHLTKFSMDQF LSESTVRHKVAELDTILKTFDFSIQRTKGEIRLVGAEPRIRFFMIAFYWRVFSGLDWPFA DVSQTKCETLAKELIALGYFPANQLNMKLICYILAVNIIRYRKGFQTNFLLSESISSLSD EDQEVLLQFVDTHHLLKEHLENQLTNAFLLPKSESQLIFLFLLTNTTVQLSNKHFIDLIE PNQPFSETNSFIKKILHSLETENPHAFETTKNRGLFTKQLVAGLLFVELFEQMDFTLTGY NIKKYLLQNFAHLFEHAQKIVAEQDIYVSNPAKQTGLGLQLSMAYTLITAPTAFNQTIHI KIETDLPTPIEAIIIQRIRETFASFYHLAINQLSEEDRYDLYLSTTPLLQVKQAAPFLLI NAQVSLTDLLAIQEQLVRLVAKK >gi|284795492|gb|ADDQ01000057.1| GENE 32 35863 - 36975 1134 370 aa, chain + ## HITS:1 COG:no KEGG:EF1091 NR:ns ## KEGG: EF1091 # Name: not_defined # Def: von Willebrand factor type A domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 66 356 226 526 1103 70 26.0 1e-10 MKKTTLFLFMFFFLMTIFSIDVSAETYNFNYKNDEQGHYLTNGISEGDTNNYDYGHAPEA TFDEEQYVNYGDEAYLKKSVAAVTGQQGLFNVTLDVKGNQTESPIDLVLVIDYSSSMKGE KLNNALKGLQQFGEELSDSLTDGHVRIGIVAYNRLTYSTADFSTDMNDLEDFLRNTAEPH SGTFMQKGLLEGQRLLAEKSRPNAKKMLVHIGDGSANASFLPRENAQIYPNNGEIIDYNG YHTSSYMEEFQTESNQYYTSNSASTDANAIQTNSTTVTDNTLGTIVSLKKSGDTYYSIAA NPSLRGEYISRNIASDPKNYLIIDENLSGLGTALKELAGSINNTIHEGLIIDPMGENILL QGAGNFTEDK >gi|284795492|gb|ADDQ01000057.1| GENE 33 37001 - 37885 793 294 aa, chain + ## HITS:1 COG:no KEGG:LKI_08020 NR:ns ## KEGG: LKI_08020 # Name: not_defined # Def: hypothetical protein # Organism: L.kimchii # Pathway: not_defined # 18 271 445 677 894 110 27.0 8e-23 MPTGEWLEASDLLTDVVVTEENQVLHISTISLGKNERLTLTYQIRLNTETNDFKGDTWFL CNDRTTLQPTPKEETVDFPIPAIKAPTVQLKLIKNWENITEKEIPEAIQYQVTRKATTDE TAWSTSEVMQLTQKEGYQKLINQVTVNGAEVALPKFNNRGEDFVYQIEEVNVPAEFDSIM TKTKDEFILTNRRKEVVSSTTDTSTNESLSSETATTNSSAEKPIVVETTTTTSELKDNNF SAETNTTAKKITKATPNDRHLPKTNETQKFQRVFLLLGGLLVGLSGFYLLKQRN >gi|284795492|gb|ADDQ01000057.1| GENE 34 38312 - 39670 1578 452 aa, chain + ## HITS:1 COG:SP2216_1 KEGG:ns NR:ns ## COG: SP2216_1 COG3883 # Protein_GI_number: 15902020 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 270 1 269 270 105 37.0 3e-22 MKKRLFASVLLCSLTLSAIATPSIALADNVDKKIEEKNQEISSLKAKQGDLASQVSSLEA EVSSVFDESMALREQKQTLKAKSEQLQQEITNLNQRIEKRNEAIKNQARDVQVNGQSTTM LDAVLDADSVADAISRVQAVSTIVSANNDLMQQQKEDKQAVVDKKAENEKKVKQLEATEA ELETKRQDLLSKQSELNVMKASLALEQSSAESSKAGLEKQKAAAEAEQARLAAEQKAAAE KAKQAAAKPVQAKAEVKAEAPVASSSTTEAQAPASSSSATESNTQQTTETTTPSTDNSAT ENTGSSSEQSTTPSGSESNGEGTVTPPTPEPDKKDPIPTPPPATGDVTLDALNVLRQSLG LRPVVWDAGLAASATARAAQVEAGGIPNDHWSRGDEVIAIMWAPGNSVIMAWYNETNMVT ASGSGHRDWEINPGITRVGFGYSGSTIVGHSA >gi|284795492|gb|ADDQ01000057.1| GENE 35 40078 - 41205 1335 375 aa, chain + ## HITS:1 COG:lin0838 KEGG:ns NR:ns ## COG: lin0838 COG0620 # Protein_GI_number: 16799912 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase II (cobalamin-independent) # Organism: Listeria innocua # 1 375 1 365 367 363 49.0 1e-100 MSSQIPFTVDHVGSFLRPETIKKARKKVQAGALSQAELRLIEDEEIKALVAKQKAGGLRG ITDGEFRRGFWHIDFLEGLNGVTGYIPETGYNQTFHGKAAPAYNIRVVDRISFPAQHPFL EDFSFLKEVVEVGDGTVAKATIPSPTMILRQEILSNDGTSRIQTIYPEIGAFYKDLAQTY KDAIAAFYERGCRYLQFDDTNWAFLADQTKQEELRAKGIQPEEIAQVCTTIINEALAGKP EDLTVTTHICRGNHASSWLFSGGYEPIAKELFATNYDGFFLEYDSDRAGDFSPLRHWQNN GSKVVLGLVTSKFPELEETEQVKARIEEAQQFVPLENLSISPQCGFASTEEGNRLTEKEQ WRKVQLLQEIAREVW >gi|284795492|gb|ADDQ01000057.1| GENE 36 41257 - 42441 1252 394 aa, chain - ## HITS:1 COG:SA1192 KEGG:ns NR:ns ## COG: SA1192 COG0628 # Protein_GI_number: 15926939 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Staphylococcus aureus N315 # 6 383 18 393 402 266 35.0 4e-71 MDKESTKWIRFLGGKNLLYTLTILCLIAVTIFLFNTVSFIFKPIFVIFSAVLGPVIFGII LFYLLNPMVKRLEKKIPRVWAIAILYVLIIALLVLVGLQLFPIIQDQTEELIKQFPSFWK STLQTVQEFMAKTPFAKDLESANESINQLWGKLANSFKDFAGDYLQTGAQGLGSVFSAVS STFLTLFTGPIIAFFLLKDKEKFYRFVKGIIPPAFRPDFDEYSQIANIQIGDYLKGQVIA SLVLGIMYWPAFLLIGLQFGSILALAAGILCIIPYIGPFIAFIPGLIIAFQDSTFMVVKF VIVWFAIQLIHGDFVIPRVMGDKLKVHPITILLVLLVMGELFGLMGVIFGIPMYCLVKVT VIYLFRKFKQRYNRFYGDNGEYEHTNFTKDQYLK >gi|284795492|gb|ADDQ01000057.1| GENE 37 42457 - 42972 457 171 aa, chain - ## HITS:1 COG:no KEGG:EF0397 NR:ns ## KEGG: EF0397 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 171 1 171 171 245 99.0 5e-64 MFQTFRENFRRHTLLRDAVFIVIGSAIVFNPGAFFQFVGYLIAGYLMLLGLINIYDDYKI KKQTGSWGLGFVTGLIFVVLAVAFLFFAPVIVSILPFLLGISIVINGLVQLTFALNIRQT GALIYSILVLIAGAVLVFNPFKSLLVLMQVFGFILIFMGVIEIIGHFRNKA >gi|284795492|gb|ADDQ01000057.1| GENE 38 43049 - 43150 97 33 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLETVSLEKITLKIKKVLQMSENWHIMESEILF >gi|284795492|gb|ADDQ01000057.1| GENE 39 43165 - 43851 737 228 aa, chain + ## HITS:1 COG:SP0858 KEGG:ns NR:ns ## COG: SP0858 COG3819 # Protein_GI_number: 15900742 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 1 220 1 221 229 128 38.0 8e-30 MDLLPLLGVLIVIVGFALKFDAILIVMVALIVTAFTGGLGLTSMLETLGTTFVNNRGMAI FIIIMLATGTLERNGLKESAATLIKRFKKVSAGVIIDIYGVFRIIFAAFNVSFGGVAGFV RPIILPMALGTIESKNLPMVPEYEEELKGMASAMENICWFFGQVLFVGGAGALLVQSTLK DLGYEVTLGKLALVEVPVALVALISASIYFTLKEKRLRKKYYGQEGLK >gi|284795492|gb|ADDQ01000057.1| GENE 40 43848 - 44792 1117 314 aa, chain + ## HITS:1 COG:SPy0507 KEGG:ns NR:ns ## COG: SPy0507 COG3817 # Protein_GI_number: 15674612 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 15 313 8 305 308 207 41.0 2e-53 MSFFTDPSIDLSAKLLEVLYIFMGIILLYTSFRSFRDKTNQHAYGTSLFWGILGILIGFG RFIPPVACGVLIFVMTIPAILQKVTKGESRLPSKEYMEKMSQKLGMKIFIPALSIGVFAI LFATLTTLGALVGVGVGVFVAIFIMMFFSKNNTPKVFFDDAAEMLETVGPLSTLPMLLAC LGAVFTSAGVGEIISKGVSAVVPAGNVNVGIIIYAVGMVIFTAIMGNAFAAITVMTVGIG VPFVFSLGADPALVGMVALTCGFCGTLLTPMAANFNIVPVAMLEMKDKYGVIKNQLPIAL FMLIFQIVYMILFK >gi|284795492|gb|ADDQ01000057.1| GENE 41 44808 - 45449 848 213 aa, chain + ## HITS:1 COG:SP0860 KEGG:ns NR:ns ## COG: SP0860 COG2039 # Protein_GI_number: 15900744 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) # Organism: Streptococcus pneumoniae TIGR4 # 1 213 1 214 214 237 55.0 1e-62 MKVVVTGFDPFGGEAINPAFEAVKKLPAEIAGAEIIKVEVPTVFGTSGEKVAEAIETHQP DMVICVGQAGGRQTVTVEKVAINLAEARIPDNAGQQPSDVPLVEDGATAYFTNLPIKAMV KNCHDHQLPAAISYTAGTFVCNDIMYHLLHLINTKYPTIRGGFIHVPFLPEQTIDKPTFA SMSLEAITDSLFYMIEAAVKTQEDIQLQGGTTH Prediction of potential genes in microbial genomes Time: Sun May 15 13:03:49 2011 Seq name: gi|284795491|gb|ADDQ01000058.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont138.1, whole genome shotgun sequence Length of sequence - 906 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 608 745 ## EF2975 hypothetical protein 2 1 Op 2 . - CDS 612 - 866 182 ## COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase] Predicted protein(s) >gi|284795491|gb|ADDQ01000058.1| GENE 1 2 - 608 745 202 aa, chain - ## HITS:1 COG:no KEGG:EF2975 NR:ns ## KEGG: EF2975 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 202 1 202 247 384 99.0 1e-105 MSLKPNYLEERICLNVLANSVENAQACYEAAEGHVVLGVLSKNYETDEAAIDDMKKYQAA TNNALSVGLGAGDPNQSQMVARLSEVLQPQHVNQVFTGVGASRALLGQDETVINGLVSPT GKVGYVNIATGPLSSGAPAAEVPIETAIKLLKDMGGSSIKYFPMKGLAHKEEYQAVATAC AKYDFYLEPTGGIDLENFEEIV >gi|284795491|gb|ADDQ01000058.1| GENE 2 612 - 866 182 84 aa, chain - ## HITS:1 COG:STM4446 KEGG:ns NR:ns ## COG: STM4446 COG1921 # Protein_GI_number: 16767692 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine synthase [seryl-tRNASer selenium transferase] # Organism: Salmonella typhimurium LT2 # 4 84 288 371 372 61 39.0 3e-10 MSDLTAKIVQDGAGRDIYRASVKVDGRKTAKEVIQALKAESPAIYTREYQANNGIIEFDI RSVNQEEMNKIVQRLQEIMDTKEK Prediction of potential genes in microbial genomes Time: Sun May 15 13:04:00 2011 Seq name: gi|284795490|gb|ADDQ01000059.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont138.2, whole genome shotgun sequence Length of sequence - 25438 bp Number of predicted genes - 27, with homology - 26 Number of transcription units - 13, operones - 6 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 1/0.250 - CDS 3 - 972 1153 ## COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase] 2 1 Op 2 . - CDS 962 - 2071 1208 ## COG3964 Predicted amidohydrolase 3 1 Op 3 . - CDS 2080 - 3168 1158 ## COG3589 Uncharacterized conserved protein 4 1 Op 4 . - CDS 3177 - 3425 85 ## EF0835 hypothetical protein - Term 3462 - 3497 -0.6 5 1 Op 5 . - CDS 3502 - 4815 1469 ## COG1455 Phosphotransferase system cellobiose-specific component IIC - Prom 4858 - 4917 11.1 - Term 4910 - 4945 -0.8 6 2 Op 1 . - CDS 4946 - 5641 1077 ## EF0833 hypothetical protein 7 2 Op 2 . - CDS 5661 - 6440 985 ## EF0832 hypothetical protein 8 2 Op 3 . - CDS 6456 - 6812 416 ## EF0831 hypothetical protein 9 2 Op 4 . - CDS 6843 - 7199 597 ## EF0830 hypothetical protein 10 2 Op 5 . - CDS 7214 - 7537 496 ## EF0829 hypothetical protein 11 2 Op 6 . - CDS 7503 - 9422 1971 ## COG3711 Transcriptional antiterminator - Prom 9497 - 9556 3.7 - Term 9585 - 9628 4.4 12 3 Tu 1 . - CDS 9792 - 10757 1037 ## COG0673 Predicted dehydrogenases and related proteins - Prom 10777 - 10836 2.5 - Term 10810 - 10846 4.3 13 4 Tu 1 . - CDS 10859 - 11200 322 ## COG2337 Growth inhibitor - Prom 11226 - 11285 6.7 - Term 11311 - 11363 12.0 14 5 Op 1 . - CDS 11370 - 11999 772 ## COG0572 Uridine kinase 15 5 Op 2 . - CDS 11996 - 12091 87 ## - Prom 12158 - 12217 6.3 + Prom 11997 - 12056 6.5 16 6 Tu 1 . + CDS 12174 - 12629 517 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 12635 - 12672 6.6 - Term 12623 - 12660 6.6 17 7 Op 1 . - CDS 12665 - 13345 708 ## COG1011 Predicted hydrolase (HAD superfamily) 18 7 Op 2 . - CDS 13342 - 14124 728 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases + Prom 14170 - 14229 6.2 19 8 Tu 1 . + CDS 14455 - 15063 1004 ## PROTEIN SUPPORTED gi|29375409|ref|NP_814563.1| 50S ribosomal protein L25/general stress protein Ctc + Term 15102 - 15152 17.8 + Prom 15219 - 15278 6.9 20 9 Tu 1 . + CDS 15314 - 15637 514 ## EF0819 hypothetical protein + Term 15652 - 15702 13.7 - Term 15640 - 15690 12.9 21 10 Tu 1 . - CDS 15706 - 18720 2923 ## EF0818 polysaccharide lyase family protein 8 - Prom 18748 - 18807 2.3 - Term 18762 - 18804 4.2 22 11 Op 1 13/0.000 - CDS 18835 - 19635 995 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 23 11 Op 2 13/0.000 - CDS 19628 - 20419 1220 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 24 11 Op 3 . - CDS 20468 - 21394 966 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB - Prom 21615 - 21674 8.7 + Prom 21460 - 21519 9.9 25 12 Tu 1 . + CDS 21622 - 22329 824 ## COG2188 Transcriptional regulators - Term 22298 - 22348 14.7 26 13 Op 1 . - CDS 22354 - 24132 1680 ## COG1874 Beta-galactosidase 27 13 Op 2 . - CDS 24145 - 25308 875 ## EF0812 glucuronyl hydrolase, putative - Prom 25350 - 25409 9.3 Predicted protein(s) >gi|284795490|gb|ADDQ01000059.1| GENE 1 3 - 972 1153 323 aa, chain - ## HITS:1 COG:STM4446 KEGG:ns NR:ns ## COG: STM4446 COG1921 # Protein_GI_number: 16767692 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine synthase [seryl-tRNASer selenium transferase] # Organism: Salmonella typhimurium LT2 # 5 322 5 325 372 321 55.0 1e-87 MTISYEKFHLKEVINASGKMTILGVSKVSEAVLAAQRFGGEHFFEMSELSVQTGAFLANL LKVEDAQIVSSASAGIAQSVAALIGKGSLYHTYHPYTEKIEQREIVLPKGHNVDYGTPVE VMVAQGGGQVVEAGYANMCSPEHVEMMISEKTAAILYIKSHHTVQKSMLTVAEAAKVAQR HKVPLIVDAAAEEDLFKYTEAGADLVIYSGAKAIEGPSAGLVVGKKEYIDWVRLQGKGIG RAMKIGKDNILGFTQAVEEYLAHGSESGASMQERLKPFVEAINNLSDLTAKIVQDGAGRD IYRASVKVDGRKTAKEVIQALKA >gi|284795490|gb|ADDQ01000059.1| GENE 2 962 - 2071 1208 369 aa, chain - ## HITS:1 COG:STM4445 KEGG:ns NR:ns ## COG: STM4445 COG3964 # Protein_GI_number: 16767691 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Salmonella typhimurium LT2 # 3 367 2 364 377 339 45.0 5e-93 MDYDLLIKNGQTVDGMPVEIAIKEKKIAAVAATISGSAKETIHLEPGTYVSAGWIDDHVH CFEKMALYYDYPDEIGVKKGVTTVIDAGTTGAENIHEFYDLAQQAKTNVFGLVNISKWGI VAQDELADLSKVQASLVKKAIQELPDFVVGIKARMSRTVIGDNGITPLELAKQIQQENQE IPLMVHIGSAPPHLDEILALMEKGDVLTHCFNGKENGILDQATDRIKDFAWQAYNKGVVF DIGHGTDSFNFHVAETALREGMKAASISTDIYIRNRENGPVYDLATTMEKLRVVGYDWPE IIEKVTKAPAENFHLAQKGTLEIGKDADLTIFTIQAEEKTLTDSNGLTRVAKEQIRPIKT IIGGQIYDN >gi|284795490|gb|ADDQ01000059.1| GENE 3 2080 - 3168 1158 362 aa, chain - ## HITS:1 COG:L176316 KEGG:ns NR:ns ## COG: L176316 COG3589 # Protein_GI_number: 15672155 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 5 361 4 361 364 328 46.0 1e-89 MKRALGVSVYPDHSDINQDKAYLKKASECGFTRIFMSMLEVTDGKEAVQKKFKELISYAK NLGFETILDVVPSIFDELEISYDDLTFFSELGADGIRLDTGFDGNKEAMLTFNPFGVAIE LNMSNDVAYLDNILTYEANRPFLYGCHNFYPQAGTALPYDFFEKCSIRFKKEGIRTAAFI SSQVGEIGPWDVNDGLPTLEMHRQLPVTVQAKHLFATNLIDDVVIGNAYASNEELEALGQ LNRYQTELTIVFEEATSEIEKEIVTKNQHFRRGDITQQMIRSTEVRKKYKNEANPPHDNQ AMLQPGDVVVGNDTFGKYKNELQVVLEPHQDSRKNRVGRIIEEELVLLEFINPWTKFRFI EK >gi|284795490|gb|ADDQ01000059.1| GENE 4 3177 - 3425 85 82 aa, chain - ## HITS:1 COG:no KEGG:EF0835 NR:ns ## KEGG: EF0835 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 11 82 11 82 82 110 97.0 2e-23 MIIWFIFFFIVSQIIIEKRQLPTVVYQFGLVKTLVFTAVCITLSMIIGGFLNQSVLLVGS TTILCSSVIAWKFRNKFENSGV >gi|284795490|gb|ADDQ01000059.1| GENE 5 3502 - 4815 1469 437 aa, chain - ## HITS:1 COG:BS_ywbA KEGG:ns NR:ns ## COG: BS_ywbA COG1455 # Protein_GI_number: 16080890 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Bacillus subtilis # 1 437 1 442 444 295 42.0 2e-79 MNGFVQWMEVKLMPIANKFGSQRHMTAIRKGLIATMPLTIVGSFFTIFQNIPIEAYTKLI EPYQAILDIPSRYTMGLLALYATFGIASSLAKSYKLDSLTCGILALMAFLVTAAPPTRVF EDVDNVITAGRYINLANLGSASLFGAIVTALLSVEIYRFFIEKDIMIKMPDGVPPEVSNS FIALIPGAVILLLFWVIRHVIGFDLNGFLSTLLMPLKGILAGNSLFGGLLTVFLICFFWV LGIHGPAIMGPVIRPFWDMSIAENLEAFTNGANVHQLPNIFTEQFLQWFIWIGGAGTTLS LVVLMMFSKSTYLKSLGRLSFLPGLFNINEPVIFGTPIVMNPILGIPFIVAPLITTTLSY FLTVANIIPMMAARLAFAIPAPIAAWMSTNWSFSAAVLVIVNFLITMAIYYPFFKVYEKQ QLDKEAEELAAEQAAKN >gi|284795490|gb|ADDQ01000059.1| GENE 6 4946 - 5641 1077 231 aa, chain - ## HITS:1 COG:no KEGG:EF0833 NR:ns ## KEGG: EF0833 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 231 1 231 231 317 100.0 3e-85 MEQQEKNEWAQQEQEIQEGLKGKSFWYADWGFPILVGIMSAAIFAGTHMYVVYGVGAFNE VSIVAMLKAGLDGGSYGAAAAFGASFLFARILEGSLVGILDLGGSILTGIGIGVPAIFLS MGIKAPVENFGLALLTGALLGLAVGGVIVLIRKFTINQGNSTFGADVMMGAGNASGRFLG PLIILSAAGASIPIGIGATLGALGFYIWKKPIAGGAILGAMIFGAIFPVSL >gi|284795490|gb|ADDQ01000059.1| GENE 7 5661 - 6440 985 259 aa, chain - ## HITS:1 COG:no KEGG:EF0832 NR:ns ## KEGG: EF0832 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 259 1 259 259 436 99.0 1e-121 MEFVIILLKSLLIGGLLGFAAGAGAARMFHAPQTQGLGAFRTLGEMNAAQGDPASHFSFG LGFFFNAWASAVGAGAFTQDVTHRIVPNWAAAILLVKDKDVTKTMHNPKKMGIVGAFVGM ATVAFLNSTAAAIPESLQVTAVAVLVPAATILINTVMPVLFWLAALDAGKRTGFWGTLFG GLSQLVMGNAVPGVVLGILIGKGVDDLGWTRMTRGMLGAIILLFILSGFFRGFDLEMIES FRLSIPQWLNNLHNVFTVK >gi|284795490|gb|ADDQ01000059.1| GENE 8 6456 - 6812 416 118 aa, chain - ## HITS:1 COG:no KEGG:EF0831 NR:ns ## KEGG: EF0831 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 118 1 118 118 184 100.0 7e-46 MDATKRSTQTVIVSGKGNKKNEAFASALNDVSKKVLKETTEVLIRIEPKEVTIRQAKEQV YTEKFLFFFFPRKRVIYHVELAVEVEIQAIAVEEVDFLTETIKEPNAVVVPFLSKRGV >gi|284795490|gb|ADDQ01000059.1| GENE 9 6843 - 7199 597 118 aa, chain - ## HITS:1 COG:no KEGG:EF0830 NR:ns ## KEGG: EF0830 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 118 1 118 118 194 100.0 6e-49 MITVVIADRLGKGQNVAKGVEQAGGRAVVVPGMGADMRLGDVMQQEKADLGISFCGSGGA GALTAATKYGYPERHGMRSIEEGVTAINDGKTVLGFGFMDQEELGKRVTEAFIKKHGA >gi|284795490|gb|ADDQ01000059.1| GENE 10 7214 - 7537 496 107 aa, chain - ## HITS:1 COG:no KEGG:EF0829 NR:ns ## KEGG: EF0829 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 107 5 111 111 160 99.0 1e-38 MEAQEIIRQSAEPEKLQSIIKQTSARLAEAQIEPTELQWTILINHLNEMLNRSREGTTLA GVDRTLFTELTPETLKIAQETTEAIGQLSEDEWYVLAVHFEVAKQNN >gi|284795490|gb|ADDQ01000059.1| GENE 11 7503 - 9422 1971 639 aa, chain - ## HITS:1 COG:BS_licR_1 KEGG:ns NR:ns ## COG: BS_licR_1 COG3711 # Protein_GI_number: 16080911 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus subtilis # 4 493 1 486 499 144 25.0 8e-34 MTVLLSKRAINILLMLLDLEGSITTQELAENFTVSVRTIKYDLEDIRAWFEQHDETLYSK RNKGIWLDLPDSKRLLLKNEIIDVDRFETYPDQKRRVNVLIFQLLSVKGYLTAQQLADEL LVSRNTIVSDLEQVERLLQAYDLTLIRQARQGFTISGEESNVRLLMEFITQKELTEYDIY QIMNYVTKTKGAEKIPKIKFGSGTLFQGCYRSALKKMRNLINPLDQNQFDYAEILSITLR VAIAAARMQMAHTIGTYRVLSQKTRFEQRNEVPLLLLQEVFERYDLPLLADEYFYIYSDL FGTHQRQDMVQLTKQVIESVSKELNYPFVNDRQLFTNLFAHLSLRFTKKHLFINEYNPFS EEIKGKHPALFLAIQSACKQLIQRSVLLVNDSFCAYIALHFLAAQERQQQEAKVVRIVYV CSTGLGVTSLIEQKILEEVPNVELAGFASVLNATEVIQAEKPDLVLSIFPIEEMTYPFIK VSPLLTDTDLSLIREEVDKILLGKRQGKGTARSTKSDVIEKNERIQSQDLLVKAYIIYEE LKRMFQTKLLSEYQEAFLLHVLLMTHRITFNKQYEEIPCNREVSHERQEEIRQIECLFAK NELPVNHAEISALLNYLEQPKEEEDGTSNGSTGDHSTKC >gi|284795490|gb|ADDQ01000059.1| GENE 12 9792 - 10757 1037 321 aa, chain - ## HITS:1 COG:L194226 KEGG:ns NR:ns ## COG: L194226 COG0673 # Protein_GI_number: 15673536 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Lactococcus lactis # 4 321 2 319 324 248 43.0 1e-65 MDKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEEL CKDETIDIIYIPTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLM EAQKSVFLPITQKVKATIQEGRLGEILWVQSVTAYPNVDHIPWFYSREAGGGALHGSGSY PLQYLQYVLGKEIQAVTGTATYQQGATDSQCNLALKFAEGTLGNIFINVGLKIPSEMTIC GTKGQIVIPNFWKTDCAYYTDAQGNTAKWSEQFTSEFTYEINHVNQCLQDKKLTSPVMTK ELTIATVKIVEGFYQEWFDNE >gi|284795490|gb|ADDQ01000059.1| GENE 13 10859 - 11200 322 113 aa, chain - ## HITS:1 COG:lin0887 KEGG:ns NR:ns ## COG: lin0887 COG2337 # Protein_GI_number: 16799960 # Func_class: T Signal transduction mechanisms # Function: Growth inhibitor # Organism: Listeria innocua # 1 112 2 112 115 119 59.0 1e-27 MIKRGEVFYANLSPVVGSEQGGIRPVLIIQNNKGNLFSPTLIVAPITRNVSKRLQPTQVL IEIPHNECRTPSLILLEQIRTLDKERMLHKVCQLSREEMEQVNQALKVSVGIR >gi|284795490|gb|ADDQ01000059.1| GENE 14 11370 - 11999 772 209 aa, chain - ## HITS:1 COG:BH1275 KEGG:ns NR:ns ## COG: BH1275 COG0572 # Protein_GI_number: 15613838 # Func_class: F Nucleotide transport and metabolism # Function: Uridine kinase # Organism: Bacillus halodurans # 5 206 4 205 211 278 70.0 6e-75 MKDSQPIIIGVTGGSGSGKTSVSRAIFNNFPDHSIMMLEQDSYYKDQSHLSFEERLNTNY DHPFAFDTDLLIQHVEQLLNYQAIEKPVYDYVAHTRSTETVIQEPKEVIILEGILILEDR RLRDLMDIKVYVDTDDDIRIIRRIKRDMEERGRTLDSVIEQYLTVVKPMYHQFIEPTKRY ADIIVPEGGENHVAIDLINTKVDSILTKM >gi|284795490|gb|ADDQ01000059.1| GENE 15 11996 - 12091 87 31 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKSLGKGLAFFRVFIIIVKDNEVFEKKEVYT >gi|284795490|gb|ADDQ01000059.1| GENE 16 12174 - 12629 517 151 aa, chain + ## HITS:1 COG:BS_yvbK KEGG:ns NR:ns ## COG: BS_yvbK COG0454 # Protein_GI_number: 16080442 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 15 150 19 155 155 135 52.0 3e-32 MIKKVKKEALTTAHYALLYEADPSKKMVADYITRGICFDYQTEELQGILVLLPTHPRTLE IVNIAVSEESRGRGIGQELLHFAIDFAKKEKYDYLEIGTGSTGFQQLYLYQKVGFRMTHI EPDFFIHHYDEPIIENGLPLKDMVRLRLHLS >gi|284795490|gb|ADDQ01000059.1| GENE 17 12665 - 13345 708 226 aa, chain - ## HITS:1 COG:BS_yfnB KEGG:ns NR:ns ## COG: BS_yfnB COG1011 # Protein_GI_number: 16077800 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Bacillus subtilis # 2 224 5 227 235 246 54.0 3e-65 MKTLLFDVDDTLLDFKLAEKKALHALFEEENVPFTSEVESTYHRINQGLWRSFEEGKITK DVLLDTRFGLLFDAFNREVDSVKMGENYREYLSQGHDLLGNSQRILEKLAPHYDLYIVTN GVAKTQYRRLEESKLMPYFKDIFVSEEVGYQKPMKEYFDFVFERIPNFSREKTMIIGDSL HSDIQGGQQAKIQTVWLNPTSAPATPTIQPNYTIQQLDELLPILGH >gi|284795490|gb|ADDQ01000059.1| GENE 18 13342 - 14124 728 260 aa, chain - ## HITS:1 COG:SPy1398 KEGG:ns NR:ns ## COG: SPy1398 COG1187 # Protein_GI_number: 15675319 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Streptococcus pyogenes M1 GAS # 1 194 1 194 194 198 53.0 8e-51 MRLDKLLEELQFGSRKTVKRIIRGKQVTVDGIVTLNESQNVDAQLQMIKVKGQLISHKTH VYYMLNKPKGVVSAVSDASKKTVIDLIAPQDRRPGLYPVGRLDGDTEGLLLLTDNGQLGY QLIRPNKEVAKCYEVKVNGLVSAEDCAKFKDGIVLQGGIQCKPAKITVLAATETESHVFL TIQEGKFHQVKKMFLSVGKKVTALKRQTMGPLRLDPQLPLGAYRSLTREELQLLLPYFFI EKQQTSKALPSNLKREEERK >gi|284795490|gb|ADDQ01000059.1| GENE 19 14455 - 15063 1004 202 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375409|ref|NP_814563.1| 50S ribosomal protein L25/general stress protein Ctc [Enterococcus faecalis V583] # 1 202 1 202 202 391 100 1e-108 MSVQLEVKERAIRPRSLRNQLRHEGKVPAIVYGYQIESTPIYFEEKDLSKILREHGANTV IKMTVDGKNINTLMSKAQLDTFTGQMLHVEFLSVNMKETTEVEAEVQLIGESAGVKAGGT LAQNLYTVLVAATPDKLPESIEVDITNLEIGDALTIADLPEHKDYEILTDPEEQLVAIVE AQTAPEEEEGTAAETTEPELAE >gi|284795490|gb|ADDQ01000059.1| GENE 20 15314 - 15637 514 107 aa, chain + ## HITS:1 COG:no KEGG:EF0819 NR:ns ## KEGG: EF0819 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 107 1 107 107 201 100.0 6e-51 MFERFDSDRSRYASLGVVSSLPSGLIDSIWLIIDLNLKGVIPLNDLLHFDLLNNNGKVTV HFSQENSSVEMAIDLPFSYSTAYPSRIFAFDDGHRETILLPAEMLES >gi|284795490|gb|ADDQ01000059.1| GENE 21 15706 - 18720 2923 1004 aa, chain - ## HITS:1 COG:no KEGG:EF0818 NR:ns ## KEGG: EF0818 # Name: not_defined # Def: polysaccharide lyase family protein 8 # Organism: E.faecalis # Pathway: not_defined # 1 1004 1 1004 1004 1929 99.0 0 MKNRKIWVMLVGLFTALTSGFMGTTLTFAEENEASQTIEQPSYISDFPNQVGNWQDLVGT AEKKNDSAGLWIANTKQGTNLESVSINLDAREQSSGDLELTFLYEGQSNFGLVFRGDKQK TSQWQSFAYNRDGRWQLGQPGGKWLTNIPGPTLLSGQQYKLLVRYDGKKIQTFLNDQLFY ENEEVHYPDGTSINDDWTGAVGIRLFGNLSKLNIISMKSGSVGSIPVIDSSAEYRELKEK WRNQLVSKEYDSTNQALVDYVQKISNEATELDQTMNKEPNRSYLWPLEPGNTPSADLTTQ FTKLQKLALAYGTKGSTLYQDDKLAATIIDGLDFMVTQKGYDGKKYHGNWWDWQIGVPQK FLNILMILEDKVSPEKQQIYTNALSSYVPDPFKQLYTKPQGTFVDLAFIPNFVTSGANRT DLALTVLGLGILQKDSGKINQASSSIVDVFKLVTKGDGFYQDGSFIQHNNIPYTGSYGNV LVKGVGQILAITADSSFQMDATLVTEFVENVDRAFLPLIYKGEMLPTVNGRSISRAPAVG KTGYGSTTMYNLLIVAKFAPNNYQKKFQEAVKYWMKENPDYYLTNARDFNDLQMTMQLLT NPEITGGQLPFTGTKLYASMDRFVQRTPSYMFGLGLYSKRTASFEAGNKENKRGWHTGDG MMYVYNDDEVQFNSSYWPTVDPYRLPGTTVDTISLADEVSAFTTITSKEQWVGGVTSDNQ AVVGMALNKDGTKNNGKLLPMNLQAKKSWFVLNGQIIALGAGIKGDTEASIETVVDNRLL NDAYQYQVLSNIGEIHEKNETSKKQWLLLKSDHSNANMGYYFPEETTVNVKSETRKGTYK AINEAFPSDKEYVGDYRTFTIQHGQHPTNEHYAYVVLPGIDETDLKTYAAKKTVEVLSNT EEIQAVKQEEEGYLGVNIWSETGGTIAGITSNKAISLMRKTQQHQKTYTFSDPTQTTKTL TLKIPKDYSTVISQSDGITYDDATATFTINFENAAGSSKQIIVE >gi|284795490|gb|ADDQ01000059.1| GENE 22 18835 - 19635 995 266 aa, chain - ## HITS:1 COG:lin0023 KEGG:ns NR:ns ## COG: lin0023 COG3716 # Protein_GI_number: 16799102 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Listeria innocua # 6 266 16 275 275 280 55.0 3e-75 MSKHKLTKKELNAISWRYILGSQLNWNYERMMSSGYLYGILPVLKKFYGHDEAQFQDMMR THNQFFNTNAIFGNLIMGIDVAIEEQDGYKAKETIIALKTALMGSLAGVGDSLFHVIWGT IFGSVAGTLAQNGSVVGCVIWIIANIALLFGRAALLPLGYKQGVKLVTTLKDKLSAFTNA ATVLGVTVIGALIPSVIKATVPFVYKKNGVELVIQDTLDAILPSLVPILLVLLTYWMLGQ KKLNSTRVIWIILILSIVLSAFGILA >gi|284795490|gb|ADDQ01000059.1| GENE 23 19628 - 20419 1220 263 aa, chain - ## HITS:1 COG:lin0022 KEGG:ns NR:ns ## COG: lin0022 COG3715 # Protein_GI_number: 16799101 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Listeria innocua # 1 260 1 266 267 229 49.0 5e-60 MHLAAYQIILITIYAFIAINDSLISNTLTQPAIAGMISGMIMGDLKTGLMVGGTLQLMRL GIAAFGGASVPDYFTGAVLGTAFAVISGKGAEYGIGLAVPVSLLMLQLDVVARFCNVFLL HSVDKAIDKMQVKRIPRLVLSGSVLWGLSRAIPILLMLLAGDAVVTTITDNMPEWLMTGL KTAGGVLPVVGVGILLRYLPTKQYIPYLLLGFFLAAYLKVPMLGVSIVGMVAAMLVFKRD GAKSTTQATTGNGDFEGGYDGDE >gi|284795490|gb|ADDQ01000059.1| GENE 24 20468 - 21394 966 308 aa, chain - ## HITS:1 COG:SP0061 KEGG:ns NR:ns ## COG: SP0061 COG3444 # Protein_GI_number: 15900006 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Streptococcus pneumoniae TIGR4 # 152 307 3 158 158 150 47.0 3e-36 MENIVLISHGSMAEGVKVSLEMIVGRQEHVHTVSLRPDSDNLQFEKELNEKMKALNGTTL IIADLLGGTPCNVATKNYLNVDGVEIIAGMTLSVVIEAVVNQQASIKELVCLAQENIVDV KAGMNQAEQEISEASKEKELSNYSQYAGKENIVNTRIDERLIHGQVAGIWSTSLSTQRII VANDEAATDPLQKSSLRMAAPSSMRLSVLGVEAAAKNIQSGKYGKQRLFLLFKNPKDVLR FIEAQGPIKTVNVGNMSYKEGAREVTKSIQVLPEEEQIFETIASKGVTVTAQLVPNDPVV DFMKKLRG >gi|284795490|gb|ADDQ01000059.1| GENE 25 21622 - 22329 824 235 aa, chain + ## HITS:1 COG:SP0058 KEGG:ns NR:ns ## COG: SP0058 COG2188 # Protein_GI_number: 15900003 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 2 229 3 230 238 148 40.0 1e-35 MLPKYEQIKQDLLREIKNHTFIPGDKFYSEADIKRKYAVSSITAVKALNELTSAGYLYRI QGKGTFVSKSKVSQNVKFSDIELHSLDSEKVKVLSIEEENQAEILKELGLPANASYYRIK RVRYSEDTPFLVHITHLPKKLVKEPLSKDLTAYASVYERVRKDFSVDLFSLASVETNEIV FPEDAELLNLLQLSFREPAVKQVKHSYLADGSVAEYIISYKHWKYFKTKIEVEAE >gi|284795490|gb|ADDQ01000059.1| GENE 26 22354 - 24132 1680 592 aa, chain - ## HITS:1 COG:SP0060 KEGG:ns NR:ns ## COG: SP0060 COG1874 # Protein_GI_number: 15900005 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase # Organism: Streptococcus pneumoniae TIGR4 # 1 588 1 584 595 634 53.0 0 MQTFEIKEDFLLNGQPIKIISGAIHYFRMTPRQWEDSLYNLKALGANTVETYIPWNIHEP EEGVYDFEGMKNIEAFVRLAEKLNLLVILRPSAYICAEWEFGGLPAWLLKEKGVRLRSTD PIFMTKVRNYFQVLLPKLAPLQITQGGPVIMMQVENEYGSYGMEKAYLQQTKQIMEELGI EVPLFTSDGAWEEVLDAGTLIEEDVFVTGNFGSHSKENAAVLRKFMTRHGKKWPLMCMEY WDGWFNRWGEPVIQREGTDLAKEVKDMLAVGSLNLYMFHGGTNFGFYNGCSARGAKDLPQ VTSYDYDALLTEAGEPTEKYYAVQKAIKEVCPEVWQAQPRTKKLGNLGSFPVTASVSLFA VKDQMMTPKTTAYPLSMEEAGSGYGYLLYSFDLKNYHHENKLKVVEASDRLHIYVDGDLA ATQYQETVGEELLISGQTEKDTLALDILVENLGRVNYGFKLNNPTQSKGIRGGVMQDIHF HQGYQHYPLTFSQEQLAKIDYTAGKNPLQPSFYQVTFELEQLADTYIDCRGYGKGFVVVN GHHLGRYWEIGPIHSLYCPKEFLQQGQNEVVIFETEGINIEYLKFTNQVIID >gi|284795490|gb|ADDQ01000059.1| GENE 27 24145 - 25308 875 387 aa, chain - ## HITS:1 COG:no KEGG:EF0812 NR:ns ## KEGG: EF0812 # Name: not_defined # Def: glucuronyl hydrolase, putative # Organism: E.faecalis # Pathway: not_defined # 1 387 1 387 387 798 99.0 0 MCSQENKQRLISLGENVTDEWIQTQLNECVSKIAKNMQRFGTQFPSACATNGRYRLKAND DWTNGFWTGMLWLAYEWSHQEKFRLLAMENIDSFQQRLEEHFVLDHHDIGFLYSLSAGAG YKITGDERCKQEVLAAAEVLSARFQENGSFIQAWGHYGDPKEYRLIIDSLMNLPLLFEAT KLSGNRVYEEIASRHYHTLMKTVIKSDATTYHTYYFDPETGKPKHGATHQGHSDTSIWAR GQSWAILGIPLNETFLHSQPFPEIYPQIVEVFLAHLPADLIPYWDFDFNDQMPSDKDSSA LAIAACGLLEADKLQAFPQAKELAKGMIYQLGEYYRTQNDSENEGLLLHGVYAHAEGKGI DEPNLWGDYFYMEALMRLAKPSWQRYW Prediction of potential genes in microbial genomes Time: Sun May 15 13:04:54 2011 Seq name: gi|284795489|gb|ADDQ01000060.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont138.3, whole genome shotgun sequence Length of sequence - 63057 bp Number of predicted genes - 54, with homology - 54 Number of transcription units - 28, operones - 13 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 327 313 ## COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase] 2 1 Op 2 13/0.000 - CDS 339 - 1190 920 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 3 1 Op 3 13/0.000 - CDS 1190 - 1939 1118 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 4 1 Op 4 9/0.000 - CDS 1963 - 2457 692 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 5 1 Op 5 3/0.000 - CDS 2477 - 2878 371 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 6 1 Op 6 . - CDS 2950 - 5763 1992 ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain - Prom 5797 - 5856 10.3 - Term 5839 - 5882 9.6 7 2 Op 1 . - CDS 5886 - 6413 548 ## COG0406 Fructose-2,6-bisphosphatase 8 2 Op 2 . - CDS 6479 - 7927 1693 ## COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases - Prom 7951 - 8010 3.9 9 2 Op 3 . - CDS 8024 - 8689 601 ## EF2984 transcriptional regulator, putative - Prom 8753 - 8812 7.4 - Term 9020 - 9055 4.4 10 3 Op 1 36/0.000 - CDS 9070 - 10278 1280 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 11 3 Op 2 24/0.000 - CDS 10275 - 10949 352 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 12 3 Op 3 . - CDS 10942 - 12108 1480 ## COG0845 Membrane-fusion protein - Prom 12149 - 12208 10.0 - Term 12227 - 12267 5.1 13 4 Op 1 3/0.000 - CDS 12280 - 12579 396 ## COG0607 Rhodanese-related sulfurtransferase 14 4 Op 2 3/0.000 - CDS 12572 - 14221 2129 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases 15 4 Op 3 . - CDS 14222 - 14536 419 ## COG0607 Rhodanese-related sulfurtransferase - Prom 14565 - 14624 4.3 + Prom 14619 - 14678 5.6 16 5 Tu 1 . + CDS 14705 - 14965 375 ## COG1937 Uncharacterized protein conserved in bacteria + Term 14968 - 15019 11.2 - Term 14956 - 15005 10.0 17 6 Op 1 . - CDS 15011 - 16270 1510 ## COG0477 Permeases of the major facilitator superfamily - Term 16307 - 16354 5.1 18 6 Op 2 . - CDS 16369 - 17577 1275 ## COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase - Prom 17717 - 17776 11.1 + Prom 17664 - 17723 6.6 19 7 Tu 1 . + CDS 17750 - 19378 1483 ## COG2508 Regulator of polyketide synthase expression 20 8 Op 1 4/0.000 - CDS 19496 - 20281 963 ## COG3257 Uncharacterized protein, possibly involved in glyoxylate utilization 21 8 Op 2 4/0.000 - CDS 20303 - 21526 1290 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases - Prom 21549 - 21608 6.1 22 8 Op 3 2/0.167 - CDS 21708 - 23072 1742 ## COG0044 Dihydroorotase and related cyclic amidohydrolases 23 8 Op 4 . - CDS 23073 - 24569 1381 ## COG1953 Cytosine/uracil/thiamine/allantoin permeases - Prom 24758 - 24817 6.5 - Term 25099 - 25150 12.2 24 9 Op 1 2/0.167 - CDS 25163 - 25675 587 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 25 9 Op 2 . - CDS 25694 - 26146 612 ## COG1846 Transcriptional regulators - Prom 26282 - 26341 13.2 + Prom 26258 - 26317 13.7 26 10 Tu 1 . + CDS 26339 - 27031 523 ## EF3003 putative lipoprotein + Term 27045 - 27099 15.1 - Term 27023 - 27095 22.1 27 11 Tu 1 . - CDS 27195 - 28814 1668 ## COG0659 Sulfate permease and related transporters (MFS superfamily) - Prom 29023 - 29082 5.8 + Prom 28741 - 28800 8.4 28 12 Tu 1 . + CDS 29033 - 30100 999 ## COG3049 Penicillin V acylase and related amidases + Term 30110 - 30157 7.1 - Term 30098 - 30145 3.8 29 13 Op 1 . - CDS 30152 - 30808 499 ## EF3006 hypothetical protein 30 13 Op 2 . - CDS 30833 - 32026 914 ## EF3007 hypothetical protein 31 13 Op 3 . - CDS 32118 - 35261 3486 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases - Prom 35287 - 35346 13.2 + Prom 35233 - 35292 7.0 32 14 Tu 1 . + CDS 35346 - 36491 547 ## COG0732 Restriction endonuclease S subunits + Term 36494 - 36545 7.7 + Prom 36533 - 36592 5.3 33 15 Tu 1 . + CDS 36614 - 37105 430 ## MYPU_3700 hypothetical protein + Term 37111 - 37148 5.8 - Term 37100 - 37136 5.1 34 16 Op 1 2/0.167 - CDS 37140 - 38069 656 ## COG0582 Integrase 35 16 Op 2 27/0.000 - CDS 38153 - 39370 581 ## COG0732 Restriction endonuclease S subunits 36 16 Op 3 . - CDS 39379 - 40968 1581 ## COG0286 Type I restriction-modification system methyltransferase subunit - Prom 41052 - 41111 6.5 37 17 Op 1 . - CDS 41136 - 42041 944 ## SPCG_0521 hypothetical protein 38 17 Op 2 . - CDS 42075 - 43745 1379 ## COG2508 Regulator of polyketide synthase expression + Prom 43609 - 43668 5.0 39 18 Op 1 . + CDS 43876 - 44742 425 ## EF3009 hypothetical protein 40 18 Op 2 . + CDS 44720 - 46279 1813 ## COG0074 Succinyl-CoA synthetase, alpha subunit 41 18 Op 3 . + CDS 46266 - 47690 1539 ## EF3011 hypothetical protein 42 18 Op 4 . + CDS 47733 - 48914 751 ## EF3012 hypothetical protein + Term 48957 - 49004 11.2 + Prom 48952 - 49011 8.9 43 19 Tu 1 . + CDS 49054 - 50502 886 ## EF3013 hypothetical protein + Term 50508 - 50540 2.0 - Term 50442 - 50485 6.7 44 20 Tu 1 . - CDS 50508 - 53060 2478 ## COG0474 Cation transport ATPase - Prom 53149 - 53208 3.1 - Term 53158 - 53207 9.2 45 21 Tu 1 . - CDS 53210 - 54472 1431 ## COG3633 Na+/serine symporter - Prom 54505 - 54564 8.9 - Term 54531 - 54578 11.3 46 22 Tu 1 . - CDS 54601 - 54984 337 ## COG1226 Kef-type K+ transport systems, predicted NAD-binding component - Prom 55034 - 55093 6.0 47 23 Op 1 . - CDS 55101 - 56060 897 ## COG1715 Restriction endonuclease 48 23 Op 2 . - CDS 56084 - 56824 728 ## COG0101 Pseudouridylate synthase - Prom 56851 - 56910 2.8 - Term 56892 - 56929 7.3 49 24 Tu 1 . - CDS 56936 - 58717 1915 ## EF3018 hypothetical protein - Prom 58785 - 58844 5.9 - Term 58735 - 58777 7.0 50 25 Op 1 . - CDS 58869 - 59795 753 ## EF3019 hypothetical protein 51 25 Op 2 . - CDS 59798 - 60262 478 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - Prom 60314 - 60373 6.1 - Term 60345 - 60379 4.0 52 26 Tu 1 . - CDS 60400 - 60909 639 ## EF3021 hypothetical protein + Prom 61044 - 61103 5.4 53 27 Tu 1 . + CDS 61257 - 62645 1624 ## COG1301 Na+/H+-dicarboxylate symporters + Term 62647 - 62702 14.5 - Term 62638 - 62687 12.8 54 28 Tu 1 . - CDS 62715 - 63047 224 ## EF3023 polysaccharide lyase family protein 8 Predicted protein(s) >gi|284795489|gb|ADDQ01000060.1| GENE 1 3 - 327 313 108 aa, chain - ## HITS:1 COG:STM4446 KEGG:ns NR:ns ## COG: STM4446 COG1921 # Protein_GI_number: 16767692 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine synthase [seryl-tRNASer selenium transferase] # Organism: Salmonella typhimurium LT2 # 4 108 5 109 372 89 49.0 1e-18 MNSYEKFYLKEVINASGKMTILGVSKVSEAVLAAQRFGGEHFFEMSELSLQTGAFLANLL KVEDAQIVSSASAGIAQSVAALIGKGSLYHAYHPYTEKIEQREIVLPK >gi|284795489|gb|ADDQ01000060.1| GENE 2 339 - 1190 920 283 aa, chain - ## HITS:1 COG:STM3769 KEGG:ns NR:ns ## COG: STM3769 COG3716 # Protein_GI_number: 16767053 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Salmonella typhimurium LT2 # 9 283 13 286 286 321 62.0 1e-87 MEQMTQANEQQLEQKKITKKELSKAFWIYQLGCELSNSYERLQSLVFCASMIPAIKKLYA DDEEQQREALKRHLNFFNTEGTVGASIQGIAIAMEEEKSNGAAISDTAITSIKTGLMGPL AGIGDSIIWAALMPLIISIFIPMAKGGNVIGSIGPLVLYTAITLYISWTLVNKSYTLGRN SILSLLKDGKIKQVIYSANVLGMMMMGALSASYVKIASPMTFKVTGGATIVLQDILDQIM KGLLPLAAVMAIYFFMVKKGPRYGIIIGTIVLVSLVTSFFGLL >gi|284795489|gb|ADDQ01000060.1| GENE 3 1190 - 1939 1118 249 aa, chain - ## HITS:1 COG:STM3770 KEGG:ns NR:ns ## COG: STM3770 COG3715 # Protein_GI_number: 16767054 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Salmonella typhimurium LT2 # 1 249 1 249 249 291 63.0 1e-78 MGVLGVSIIMGLYYWFARLRFGYTFSGMLSQPLGAALVAGLATGKLSEAMVVGAGIQLVY LGVTSTPGGNVPSDPALASAIAIPIALGVGMNAEAAVALAVPFGVLGVFMDQLRRTINAT WVHMADKYAEELNYGGIYRAAFVYPALAGFLIRFPLVFAANFFGQSVVNKVLEVIPAWLM HGFEVMGGILPALGFALTIMVIGKKNLIPYFLIGFVAVVYFGAEVMAVAILGICIAFLVR NKALSEEAA >gi|284795489|gb|ADDQ01000060.1| GENE 4 1963 - 2457 692 164 aa, chain - ## HITS:1 COG:STM3771 KEGG:ns NR:ns ## COG: STM3771 COG3444 # Protein_GI_number: 16767055 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Salmonella typhimurium LT2 # 1 161 1 161 161 164 50.0 4e-41 MSKIVLTRVDSRLIHGQVVTKWLQQSGANEILVVSDELEQDEFLQSIYLMAAPPGVSVVI KGIENAKEYWESQEKEEKKVLFLVPDLTTLKAMVDQEIIKEEIQVGGLGGGPNRKNVLKN INLSEEDVAILTELLTKGIHVFFQAIPEENPLPIQKLIEKYQSL >gi|284795489|gb|ADDQ01000060.1| GENE 5 2477 - 2878 371 133 aa, chain - ## HITS:1 COG:STM3772 KEGG:ns NR:ns ## COG: STM3772 COG2893 # Protein_GI_number: 16767056 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Salmonella typhimurium LT2 # 6 105 10 107 141 85 48.0 2e-17 MENEPILLLTHNGWGLELVKSVQMIVGEVTNVHEVALQAEDSLGDYLERVTEKIDQLTWH NQLLILTDVKGGTPSNVALRLSKDYDLLIVSGLCTSLLLESVMKQSGPGFRLQDAEMIQQ AAVDSCQILEIPK >gi|284795489|gb|ADDQ01000060.1| GENE 6 2950 - 5763 1992 937 aa, chain - ## HITS:1 COG:STM3773_1 KEGG:ns NR:ns ## COG: STM3773_1 COG1221 # Protein_GI_number: 16767057 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Salmonella typhimurium LT2 # 28 462 30 458 460 289 36.0 2e-77 MRIDNIHQALKQFHVQNPSSKETLLPATASQLSQTSGYTRTAVSEELSELVRKDQVVKVK SRPVLFFDKDYLEEQFPFFKSSTCYDSLASLQEDIYQQTEQIHKKKQLLKMNPFANVIGF DGSLADAIKKLKAAILYPPNGLNILLTGESGVGKTLIAEQLHQFYQVKMNQEVPFIYFNC AEYFNNPELLTSHLFGYKKGSFTGAVNDQKGLVELADGGFLFLDEVHRLTSEGQEKLFTV LDKGYFTRMGEAEKQRNVSIKFIFATTEAVNQHFLKTFLRRIPVTLAIPALAERSLKEKI QLILSFFLEESQRIQKNIHIRYEALKQLTFTHFEANVGELKAAIQFMSAQAYLEVFDQLT ETICIEANEGTVKEQPDVESLLAFNEWIPNDGLTIQYNHFYLSSQELLKSESLKNDRFYN FLLKEYADLKKLTLSTEDALAIMQNKVEQLYDMDIFAQEPLAIEAIDETLQPKIQEAIVF FEQLIQEKLTEDFQNILIVHLYSAVFYSAQMNETFYSDTKNIYSGKVTQYQAAKTMVDFL QTLFGISFADTEILFFDLFIRKVTAKKRAHSVEENCGVIVVAHGTATASSMVEYTNLLFS TTVMRAVDMPINQSVEETLEKVRAIVKQNQYKKIILMVDIGSLVYFGNAISQTFQMEVLL ISNINLLTLLEVAREVIYESTAFEYLLPVLKEKNHRALICSKGRFNEAKVLIISCLTGMG TAIKIEQLLLKTFPNELLTNVRIITLEKREVEDIDRLHSFVRKEEKIVGIIGTVKTEVPD IPFISLQDLLSKRGIQLVFELLGHHLEEKQNQELLKKVSAKYIQGLSIEAITDLLTVLNP TTISIELAKIYSDICLQTKIKSDEKVLLRFIIHCACMLERQLLNPEYDPTAYEVSYRELP EAVSVIKMAFRPLEVSYNLLIPPLEVRYIYELLFEKA >gi|284795489|gb|ADDQ01000060.1| GENE 7 5886 - 6413 548 175 aa, chain - ## HITS:1 COG:YPO0455 KEGG:ns NR:ns ## COG: YPO0455 COG0406 # Protein_GI_number: 16120784 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Yersinia pestis # 2 130 4 137 215 96 38.0 2e-20 MLYVVRHGETDYNVARRICGHAEAQLTEKGYQQAELVAEKIAKQGIQIDRLLASPLKRAQ ETARKIAERNQLTIETEPRLIEMNFGIYDGEPIETTAFQENRSEISLPFPEGESVLDVAG RIYPLIEEVLASEETYLFVCHNAVMRVIDNYFNGKKIQDFLDFHCENTQLVQYGE >gi|284795489|gb|ADDQ01000060.1| GENE 8 6479 - 7927 1693 482 aa, chain - ## HITS:1 COG:L169390 KEGG:ns NR:ns ## COG: L169390 COG0154 # Protein_GI_number: 15672148 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases # Organism: Lactococcus lactis # 1 482 4 499 499 375 43.0 1e-103 MKDGLYWVQQLKEQKVSHTELLKDIEKKVQKLNPKINGFVTFDSQEAEATYQKNKQQDTL FAGLPFPLKMLGQEKAGWSATAGSQLFKNSTATTTSNFVKQAETIGLMPLGQTNAPEFGF KNITDPALYGSARNPWNLEHSPGGSSGGAAAVVASGIVPIAGASDGGGSIRIPASFSGLI GLKPSRGSMPVGPEGWRGWQGASIDFALTISMRDTKALFYGLRGSHSGAPYQAPLAEWQT HPKKQRLKIALCTASPTGSMISPEATQAAKQAADFLAAAGHEIIEIPYPVDGAALIRSYY QMNGAETTAMMNSIQQGLGRPIRKEEIEPFSWTMHQFGQKIPAATYVHSLQLWDQAAVTM EELFQKFDLFLSPTTAFSAPKINEDLQSEHIRQRMAQAAELTEAELAELIYDYFDKSLQL TPYTQLANLTGQPAISLPTHVTATGLPLGIQLLAARGREDLLFQVGEQFEQEGKFKLPES YR >gi|284795489|gb|ADDQ01000060.1| GENE 9 8024 - 8689 601 221 aa, chain - ## HITS:1 COG:no KEGG:EF2984 NR:ns ## KEGG: EF2984 # Name: not_defined # Def: transcriptional regulator, putative # Organism: E.faecalis # Pathway: not_defined # 1 221 1 221 221 405 99.0 1e-112 MKIMVITKNILSETAFQNRLQHLDHQVFCTTCLIGEIKESHLFYRKFDAIILSETIPRKE QYLYLKELARVKTPLFLRSEDIPTSEELSISYQYGILNWLRLDATLDTLRENLLLAELNK PIQREDEKLDVEGIKLTAAERTLLAVLYSTPKEHLPMERLCKLIYDTEETANNRKKMTKQ LTKLNKKIQVGGFKKQGIQNTRYKGYKLHPQLLPYIGELFT >gi|284795489|gb|ADDQ01000060.1| GENE 10 9070 - 10278 1280 402 aa, chain - ## HITS:1 COG:SA0193 KEGG:ns NR:ns ## COG: SA0193 COG0577 # Protein_GI_number: 15925903 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Staphylococcus aureus N315 # 6 402 7 392 392 186 34.0 8e-47 MKRSIIWKTAFRSILKNKRRSLLTMLGIVIGIASVITIVAIGNGFKEDMVDKLSAEKQKE NVKKISFSAYNTSDMFSDQAMFTDNDLGVVRMVPGVEKIDFDQREVDGAQKGTLNFQAGP KNLSVTYELADKTTKELLAGRQLNDGDNAKLDKTVVVDELVAKELYQDPTAAVNRTFPYK EQLFTIVGVTTNTSGAIGPGNDDSLLYFPKKTYEHYFGKLKDTSTLKLTVAPGYQPDQVL KETIKTLSQQGTMKNSGTYQEYNVKDTIKEMGSLLNNLTLFISAIAAISLVIAGVGVMNM MYISVSERIKEIGIRRALGGTASDIKKQFLTEGIALTLIGGITGYLLGMIIAYLASMALP FSVRPDLMTVSLAIGISVFIGVVFSYFPASAASKKDLIDIMK >gi|284795489|gb|ADDQ01000060.1| GENE 11 10275 - 10949 352 224 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 221 1 220 245 140 36 2e-32 MIKLAHIHKYYYSEEETLHVLDDINLQVDAGEFLAIMGPSGSGKSTLINLLGFIDKKFEG TYLFEDREIGDFSDKELSRIRNEAVGFVFQNFSLIETLTVEENIELPLLYSGLTPKEAKD RVHEVLTKVGLPDKGKKHPKQLSGGQQQRVAIARAIVNRPSFIIADEPTGALDSKTSEEI LTLFQQLNNEGVTIILVTHDEETIEYCNRLIKVRDGKILEEVLT >gi|284795489|gb|ADDQ01000060.1| GENE 12 10942 - 12108 1480 388 aa, chain - ## HITS:1 COG:BS_yknX KEGG:ns NR:ns ## COG: BS_yknX COG0845 # Protein_GI_number: 16078499 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Bacillus subtilis # 11 383 2 376 377 90 27.0 6e-18 MKKSGQKKRNKKVWFGIGAAVVVVGFIGAKTVFSSKEVEPEYTTYTITEMASLKLDGQVS FLDTRDIFFDPSLGKIAEINVENGKEVKKDSPLLTYNNADIQATETEQANAVNRNNLQVQ QAQENVNLATQKYNEALNKVAAAKQKLNTAKEAEEKETLNAEIQQLNEAVSAANSEVAQA NQALQLANSDAVGAANTLEQTRGKVNTVVTAPIDGQVTVDASAMSSTDKPVIKIATQKKN IQGKVTEYDYDKLQTGEEVTVTTVGSGKSAPGKIVSIAQTPIAKNEGNPVVSYQFTVEGD FPWAEGLSTSIAVPQKQMIIPTAAIQKEGEKEFVYVYKAGKAKKTPIETETNLGRKVVKS GLNWKDQVIANPNKELKDNQDVQVAAND >gi|284795489|gb|ADDQ01000060.1| GENE 13 12280 - 12579 396 99 aa, chain - ## HITS:1 COG:lin0618 KEGG:ns NR:ns ## COG: lin0618 COG0607 # Protein_GI_number: 16799693 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Listeria innocua # 1 99 1 99 99 89 41.0 2e-18 MYNTIGMPEFYQEAKRKKLPIIDVREEMEYQLGHVPQAINLPLSTLTENYQQLDKNQPYY LICQMGSRSAQACAFLSQQGYQVTNVLGGTSGWLGQLEQ >gi|284795489|gb|ADDQ01000060.1| GENE 14 12572 - 14221 2129 549 aa, chain - ## HITS:1 COG:L194050_1 KEGG:ns NR:ns ## COG: L194050_1 COG0446 # Protein_GI_number: 15672768 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Lactococcus lactis # 2 456 4 456 456 587 66.0 1e-167 MKIVIIGGVAGGMSAATRLRRLMEDAEIVVMEKGPFVSFANCGLPYYVSGEIAEREQLLV QTPEALKARFNLDVRPHHEVVAIDPIEKVITVKHETEILTEHYDKLILSPGAKPFVPPIT GLAEAKSVFSLRNVPDLDQIMTALTPETKRAVVIGAGFIGLEMAENLQKRGLEVTLVEKA PHVLPPLDEEMAAFVKAELSKNNVQVITGQSAVAFEEEGQVIRLEDGQTLASDLTILSVG VQPENTLAVEAGVATGLRGGIVVDEHYQTNQPDIYAVGDAIVVKQQITQEDALISLASPA NRQGRQVADVIAGLDRKNQGSIGTAIVRVFDLTAASTGLSERAAKAAGLTTAVVHISGKD HAGYYPGATDLQLKLVFHPTTGEIYGAQGIGAKGVDKRIDILATAIKGQLTIFDLPELEF TYAPPFGSAKDPVNMLGYAAMNLVEGLSENVQWYELSNELANGAVLLDVRNPAERANGQF KNAVSIPLNELRERLEELDKSTEYIVSCHSGLRSYIAERMLKQAGISAKNLDGAFALYRM VKPEELENV >gi|284795489|gb|ADDQ01000060.1| GENE 15 14222 - 14536 419 104 aa, chain - ## HITS:1 COG:L193718 KEGG:ns NR:ns ## COG: L193718 COG0607 # Protein_GI_number: 15672767 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Lactococcus lactis # 2 101 1 101 102 93 51.0 7e-20 MLFQLFKKTPSISTKELQSRLSKEITLLDVRTPSEYRAGHIPQAINVPLNKIPAYNKSAN EVYVICQSGMRSKNAAKILARKNYHVINVRGGMSQWSGQIKGGK >gi|284795489|gb|ADDQ01000060.1| GENE 16 14705 - 14965 375 86 aa, chain + ## HITS:1 COG:SA0045 KEGG:ns NR:ns ## COG: SA0045 COG1937 # Protein_GI_number: 15925752 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 6 85 5 84 86 67 46.0 5e-12 MTEEKKKVLNRLRRTEGQIRGIQKMIDEEKECIDVITQLSAVRSSIDRVMGMIVAENLKH CFENPEKDPKEQEERLAQAINMIVKK >gi|284795489|gb|ADDQ01000060.1| GENE 17 15011 - 16270 1510 419 aa, chain - ## HITS:1 COG:STM0520 KEGG:ns NR:ns ## COG: STM0520 COG0477 # Protein_GI_number: 16763900 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 414 1 408 415 377 49.0 1e-104 MTDKTKSSLAYWKKIVILLCMGWVTIWIYRSALSPVYPQIRASLNGNASDTALGSISSFY FLGYVVMQIPAGFLVDKIGKKRVLIPGFILFALAALLIAQAQTIGTIYLGSLLAGLGCGS FYGSAYSLTSQNIPQAKKSFATAIVNSGSAVGSGLGMILSSYLVAQKGLPWQVMMYISAF MIICMLVAFQVIIRNHKEDMALIQPTVVDEKDNGAVKEKVPFKKLFAPHMLFAYILYFGT CYAYYMIVTWLPNFLSTERGFQGAAIGLSSSLVAFASIPGALFFSRLADKYMHKKVQFIV VLEFLATAMLLLTVQVSNATLLLIALIMYGFLGKLAVEPIIISWLGENAPKIGIGTTLGV FNFFGMMSSVIAPALTGKISDTTGSKVMGFYIAVVILLIGTILFMLVNLKKRGADSSNK >gi|284795489|gb|ADDQ01000060.1| GENE 18 16369 - 17577 1275 402 aa, chain - ## HITS:1 COG:BS_yurG KEGG:ns NR:ns ## COG: BS_yurG COG0075 # Protein_GI_number: 16080305 # Func_class: E Amino acid transport and metabolism # Function: Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase # Organism: Bacillus subtilis # 10 402 12 409 416 435 54.0 1e-122 MYQQPNFVRRTIMTPGPVEAHPSVLRQMGQPILGQFDPEFLQIMDEVREMIKVPFATKNQ QAFAIDGTSRSGLEAGLFALIEPGDKVLVPAYGRFAYLLGEICERARAEVIYLEKDWLAP FEQTTVIEAIKEHQPKIVAMVHGETANAQMQPLDQIGAFCRENEIFFVVDMVATYGGVET KVDDWKIDIAVAGTQKCVSVPSGLSLITYNQRVADYLAGRYQKELGLGADARNERFIQSN YLDLSQLEKYWGPERLNHHTEATTMIYGLHEGLRLLLQEGMENVYARHRKNDRILVESLQ KMGLEIFGKLDTKTPTVIPVVIPEGIDGEKVRSLLLDHFKVEIASSFGDLKGKIWRVGNM GYSSREDNVLHFLSAFETVLKHQGYQFEGGSGSTHALAEYLN >gi|284795489|gb|ADDQ01000060.1| GENE 19 17750 - 19378 1483 542 aa, chain + ## HITS:1 COG:BS_yunI KEGG:ns NR:ns ## COG: BS_yunI COG2508 # Protein_GI_number: 16080295 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Bacillus subtilis # 1 539 1 526 531 178 24.0 2e-44 MKILAEVLALPRFSDLQLLSSHSNLTQPLESVEITETPDVADFIPKNVMILTTAMIYKDD QEKLKPFIDSLKQAECTALGIKVGRFLDEISPEIVAYASAVDLPLIKIPSTQPLGGGLLH EIVGYLRDSKTEQMSVAFDIQKRFSTLLMQDVDATRFIAEFAKILNAPIILLSPWQQVIA HSNYFYGNQKSAEFFIEQLSKDHFQQLAQEKKIFRLQDERQENIQVAGFPIRVNDYFPYY LLVLSPEQIPYPISEFAIDQAILVLTFMLFKNQKIAESFEHLKTDFLDRLLDTHQEALSK HQNWLELWKNYRLINSDYYQLAIVYGVTKPENETHIRYQQAEGQLIFQWLKEQLPEILPD VALFKLKNQNKSILIFQSKKNDHLMILQNLAERLQQALPITIRFALGNAYENLEDLPNSY IEASSTLEASLHAQKPATVQLFHPKGLAGLFEKIGTEDVEYFCQQQLKELAYPTEPTLQE LRKTLKVFLDFNCEITKTANALYLHRNTIKYRMNQCEKLLGTSIQEPETSLLLRVALELS GK >gi|284795489|gb|ADDQ01000060.1| GENE 20 19496 - 20281 963 261 aa, chain - ## HITS:1 COG:STM0526 KEGG:ns NR:ns ## COG: STM0526 COG3257 # Protein_GI_number: 16763906 # Func_class: R General function prediction only # Function: Uncharacterized protein, possibly involved in glyoxylate utilization # Organism: Salmonella typhimurium LT2 # 1 258 1 258 261 296 58.0 3e-80 MGYKNNRVGYQKELLTSRAVIKKDNYAIIPHDGLVQNAVPGFENVDISILGSPKLGATFV DYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSDGQETHELEAGGYAYFTPEMKMYLA NAQEADTEVFLYKKRYQPLAGHQPYKVVGSIHDQQPEEYEGMTDVLLWSLLPKEFDFDMN MHILSFEPGASHAYIETHVQEHGAYLISGQGMYNLDNEWYPVEKGDYIFMSAYVPQAAYA VGREEPLMYVYSKDANREPEL >gi|284795489|gb|ADDQ01000060.1| GENE 21 20303 - 21526 1290 407 aa, chain - ## HITS:1 COG:ECs0578 KEGG:ns NR:ns ## COG: ECs0578 COG0624 # Protein_GI_number: 15829832 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Escherichia coli O157:H7 # 7 407 5 410 411 509 59.0 1e-144 MDLEKVLKQRIEELSAIGSDPAGGMTRLLYTDSWLAAQKYVQSQTEAFGLETQFDEVGNL FCRVAGTEFPQETILTGSHIDTVVNGGTLDGQYGVIASMTAVQYLLDKYGKPRRSLEVLS MAEEEGSRFPTVFWGSKNVVGEAKREEVVDISDNEGKKFVDEMHRQGFDFRQEQTRREDI EAFVEIHIEQGNILENEKLQVGVVHSIVGQRRYTVNLKGQANHAGTTPMSYRHDAVYGFA KICAEAIDRANEIGDPLVLTFGKVIPKPNTVNVVPGEVEFTIDCRHTDAAFLRHFTGELE ERMKTIAQELGLTIAIDRWMDEAPVPMNQAIVEVIEQKAKEGKYQYRMMHSGAGHDSQII APHYPTAMIFVPSIGGISHNPAEATAFPDLVEGVKLLADTLYELAYK >gi|284795489|gb|ADDQ01000060.1| GENE 22 21708 - 23072 1742 454 aa, chain - ## HITS:1 COG:ybbX KEGG:ns NR:ns ## COG: ybbX COG0044 # Protein_GI_number: 16128496 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Escherichia coli K12 # 1 452 1 448 453 512 54.0 1e-145 MQAELVIKNGLVILETGEVITDVAVQGGKIVAIGQDLSGERVIDATGLVVSPGMVDAHVH ITDPGGGYRDEWEGYVTGTAACAKGGVTTFMEMPLNQIPATVDKTSLEIKYKAGENKLKV DVGSFGGVVPTNLAGGIQELDEGGVSGYKCFLGTCGDRSIEGDFQNVDDYSLYEGMKQVA KTGKVLAIHAENAPITDKLGALAYQNGETTLAAYVATRPVFTEVEAIQKAILFAKETGCR IHICHVACQEGVEEVLKAQAEGVDVTCETCTHYLYFTTDELDAIGPVVKCSPPIRDADQQ AALWNHVQTGGIAFVTSDHSPCTPDLKDTTNAFEAWGGISGVQNNVDVLFDEAVQKRGLS LKQFADMIAANPADRYHLAQKGRISIGKDADFVLIKPNAPYILKAEDLEYRNKISPYIGR EIGAQVIQTILRGETIYAQETGVTEAFNGVFIKN >gi|284795489|gb|ADDQ01000060.1| GENE 23 23073 - 24569 1381 498 aa, chain - ## HITS:1 COG:ECs0572 KEGG:ns NR:ns ## COG: ECs0572 COG1953 # Protein_GI_number: 15829826 # Func_class: F Nucleotide transport and metabolism; H Coenzyme transport and metabolism # Function: Cytosine/uracil/thiamine/allantoin permeases # Organism: Escherichia coli O157:H7 # 11 473 3 462 463 445 53.0 1e-124 MEKNVSQVTAQEETAMKARGYNEDLLPSSPKQRTMSARNFFTLWMGSIHNIPNYAAVGGF IFLGLSPLQVMLAVVLSSFIVATFMNLNGVAGSKYGIPFAMHLQSTYGSLGAKLPGFLRG CVAAIAWFGLQTFTGSLALLIILGKFWPNFLEIGGSFQFFGLRLPELMAFTLFWLLNVAI GFGGSKILNRFTAILSPLIYVVIIGLTIWAIRAGGGLTPILSYQVSGAIRSVNPLVAYLI IFNSVVAVWSAPGASVADFTKNARSTRAQVVGQTAGLVVGYGIFAFSSVVILLGGSLYFG IQEWNILNIIDRLDNVAVVVLAMSVFLLTTISTNATGNIIPAGYQLAALFPKKMTYKKGV MIASVISFLIMPWKLMENADSIFIFLNAIGAVLGPVAGVMIANYYFVQKQQIDLNALYVD KHKKEEANPFYGLNKPAYVATILALALSLSGQFIPQVKIIADISWFVGFATGFVLYLVLK KWTWDSKKVKETAYQEGK >gi|284795489|gb|ADDQ01000060.1| GENE 24 25163 - 25675 587 170 aa, chain - ## HITS:1 COG:BS_paiA KEGG:ns NR:ns ## COG: BS_paiA COG0454 # Protein_GI_number: 16080268 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 3 170 4 171 172 166 51.0 1e-41 MGEIKQLTIEDAPALQEISIETYTDTFGPYNTPENMQAYLVEAYNLEKLQKELANPHSDF YFIFVDNQLAGYMKLNRETAQTEPMGPEKLEVERLYILPAFKGKKLGTQLLELAEEKARE FGKKALWLGVWEHNDAARAFYKTIGYRYYSQHSFFMGDDEQTDFILLKEL >gi|284795489|gb|ADDQ01000060.1| GENE 25 25694 - 26146 612 150 aa, chain - ## HITS:1 COG:BH3077 KEGG:ns NR:ns ## COG: BH3077 COG1846 # Protein_GI_number: 15615639 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 150 1 150 150 198 72.0 4e-51 MTDILREIGMIARALDSISNIEFKELSLTRGQYLYLVRVCENPGIIQEKIAELIKVDRTT AARAIKRLEEQGFIYRQEDESNKKIKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVE ISQLAEYLVRMRKNVSEDWEFVKKGNTRNY >gi|284795489|gb|ADDQ01000060.1| GENE 26 26339 - 27031 523 230 aa, chain + ## HITS:1 COG:no KEGG:EF3003 NR:ns ## KEGG: EF3003 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 230 1 230 230 317 98.0 3e-85 MKKLVCVILVIFLTGCSSQKANEPKKQENPTNHTTSIKSSTNHYSSSIETSSNNKLKETS ESASTTQTSSKSKNEVSTNVEETNSLEATPYAVDLSSLNNPLVFNFKGMNVPTSITLENL NSTPTATFRTKLFGAENDQVKEAINKYELSINTIPTKEIRIFSAADNSIRTVKVNTELIL GTNISSNDEQNRSGTLYLFNNKNGSISLITPNYAGNVTDDQKDVMLEVIQ >gi|284795489|gb|ADDQ01000060.1| GENE 27 27195 - 28814 1668 539 aa, chain - ## HITS:1 COG:L1004 KEGG:ns NR:ns ## COG: L1004 COG0659 # Protein_GI_number: 15672032 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfate permease and related transporters (MFS superfamily) # Organism: Lactococcus lactis # 81 531 1 452 460 400 49.0 1e-111 MFKKYTQMIRDEFKGYNQKKLKKDFLAGLTVAAVALPLALAFGVSSGATAAAGMITAIIA GIVIGSLSGGFYQISGPTGAMAAILMSIAAVHGMQGILLATFLAGIFLLLAGILRLGSLT SFIPSPVITGFTSGIAIIIALGQLDNFFGVRSEGHNLIEKISSYRSLGFDLSIPTTVMSI LVVLGLVFFPKKWNAMIPASLVMIILATLATVVFQLPVATVGKIPTSIFSDTRLEIGSLQ LSAFQDILVPSISIAMLGMIESLLCGASAGRMTGKPLDSNQELVAQGIGNLILPFFGGVP ATAAIARTSVVIKSGAQTRLAGIFHAVFLLLSMLLLSPVMSKIPMPALAGVLVVTAWRMN EWSVIKEFFQKRFHTALCLFFLTMVATVIFDLSLAIVLGVLAGCLFFIAKSAVITINVEE VDWSRMGLVPTDCTENWVVVYLSGPLFFMSSERLKQTLLQLETKSGVVFSMRGVPSIDST ALDILEEFCLAAEGRGQQVQFAALQPEVEKMIRTIQGNQEKEYHFSVAEFLQTVHVAEQ >gi|284795489|gb|ADDQ01000060.1| GENE 28 29033 - 30100 999 355 aa, chain + ## HITS:1 COG:BMEI0543 KEGG:ns NR:ns ## COG: BMEI0543 COG3049 # Protein_GI_number: 17986826 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Penicillin V acylase and related amidases # Organism: Brucella melitensis # 2 320 37 329 367 125 31.0 1e-28 MCTGIKIISKTNDIFYGRTMDFTFDFFGNEDPIAPKIPTLIAQFPKGTVLNSQLNPWTAK YAFMGLAMSGTDQPANDGKTVSLAITDGINEAGLSGDIQYLMESSTAPAESLADRGLTPH IAEEVLAYILSNFESVDEVKVAFEKIGLLDQKFQLDSLGEVHFTLHWTINDKNNNSIVLQ PTDNGAFVIYDSIGVVTNSPEYNYHLTNARNYIGMRNYAIKEPYTLKSGATLDPIEGGTS YGLLGIPGDFTSPSRFIRALYYSDNLQEFDSSEGIMQLYRAFQTVMIPRGIGHLGQSNSL SDFTHYWSGYDVTNLTMYVQPESTTSFTKYTLDPALTEVTTFAVSNELLLTDLNQ >gi|284795489|gb|ADDQ01000060.1| GENE 29 30152 - 30808 499 218 aa, chain - ## HITS:1 COG:no KEGG:EF3006 NR:ns ## KEGG: EF3006 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 218 1 218 218 385 98.0 1e-106 MKLTHQDFNLFNREIFTFKQLKEQQTSAEIDALKQTYKQHWEKWKALNLAITQGLPAELG ITKPKIESWTNGWNLRSHFWAAYRSEQRQAENACLALLLNKKQFQVYLMFQHYKSEERAG SVVAYNQLLNRLEAWSQTIDCEGYYIWPQEEHELVDHLPLKDYLADEKQRKILEERIGNR SFQIGKLWFATEKLETIEEKSCQALQELAPLYNALSEK >gi|284795489|gb|ADDQ01000060.1| GENE 30 30833 - 32026 914 397 aa, chain - ## HITS:1 COG:no KEGG:EF3007 NR:ns ## KEGG: EF3007 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 41 397 1 357 357 615 97.0 1e-174 MWTIIVSGLFLSSIIAGISGAFLIIEGELTTLLWEVLPAQMKWPILYYFVLCVLGALVLS YLKKRFGQVPQTAHEALTELKAKQSVDYSGVFRNLLATLVILIFGAGVGPEAALLGAIIS LSVWQSDKLRYLYFHYDEQEQQAFWTKIQRLLHPQQFVQRYDTRLAPADKKKLKQVMNGL FIVNGLVVFTFLMKLVGHPSFITKLGTGKIEMASLWLILPALLTAFVIGNAYQWLQAALA KLCQPFEEKQSILVSFGATCIFLFVILMPRLLFSGQSFMHLVPSFGSQQAWYILVVAAIM KLVFLQVCLQTGWIGGDIFPVVFSAILIGFAVAQFFPTIDSLFVVAIFATSLTTQILGTI LVPGIFVGLFFPITLWPVVVLVLFLQWLLKNKIIKSN >gi|284795489|gb|ADDQ01000060.1| GENE 31 32118 - 35261 3486 1047 aa, chain - ## HITS:1 COG:SPy1904 KEGG:ns NR:ns ## COG: SPy1904 COG0610 # Protein_GI_number: 15675717 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Streptococcus pyogenes M1 GAS # 8 1043 8 990 992 554 36.0 1e-157 MKLSVNDEATVENKLIAILGEDRNQWTYRADLKSEQDLWRNLREKIIQNNLAAIGEHPLT DQEFERIKTGLLERTRTPFEAAKWLKGENGIAKITIEREDASLGTMSLILYSNRDIGGGI SSYEVVNQIAKKNTNSAKHDSRFDVTLLINGLPIVQIELKQVTAKDGVFQAFNQIKKYAE EGMFRNNIFSTLQLFVVSNEQTTRYFANALPQFMHKKFLFSWRTKDNKKVENLYEFCRQV LNIPDAHRLIADYTIVSEEQDNKVLMVLHPYQIHAIEALYVAASKHTSGYIWHATGSGKT LTSFVSTKLLARKPGIDRTIMLLDRKDLDNQTTSEFTKFASEFNTGISSGDGKANSLIVG TGSAKELSKTLLADANSNVVIVTTRQKLDAALKYARKQEEQKGTNRFQKLMGQHIVFIVD ECHRAVSAENMMDVKKVFPRSTWFGFTGTPIFEENKKQAQGQLARTTHDQYGEVLHTYTI KNALEDKAVLGFQVEHEDTIDSESLYKKIYDGLSNETKYAEYTPEELANEVEAMDNIQKE KMLDRSIYENDKHIQEVIHKMFRPNNAYTKFDFGNGRPRKSAILTTSSIDMAKRYYHAIK KMTAKENWLEKEFPKHQIRQGRTMEDPDFPRIAITYSLEENAENSSAQQDELAKIMAEYN AYYGTSWTLQDIERYNGDINNRLARKKAEFKEFGRHVDLVIVVDRLLTGFDAPTIQTLFV DRNLEYANLIQAFSRTNRTYPDKTKGLVVTFRKPHTMEQNVANATRLYSEAKEESGLIYP TYKESKQRFKKAFRKMQEFNPEEIDENQPIDVRIDYVQSFQALSNSYEALVTYDEYNDEM EKSPALAEQVHLIEEQIGTYETIKGSLIEVEPKPENDFSEIEFYSDNHAKMYDIDSSYID QLLGNYSANSQGVREEIEKALQKLNKTECVKEVYREILNAMDNEKVDQKEDVFVLKRRYF TGTRNQVIAQFAQEWFVSEDQLHSSAIQYMIGMNPIPNMGDIISSKDFESYKATHPEAKP FKYPQQMKRAWRQTLDEYLVPLEDELR >gi|284795489|gb|ADDQ01000060.1| GENE 32 35346 - 36491 547 381 aa, chain + ## HITS:1 COG:SA0392 KEGG:ns NR:ns ## COG: SA0392 COG0732 # Protein_GI_number: 15926110 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Staphylococcus aureus N315 # 1 381 26 403 403 132 28.0 1e-30 MKEITERVKGNDGRMDLPTLTISASQGWLNQKDRFSGNIAGKEQKNYTLLLKNELSYNHG NSKLAKYGAVFSLKTYEEALVPRVYHSFKSTKNSDPDFLEYIFATKKPDKELGKLVSSGA RMDGLLNINYDDFSNIKINIPHVHEQKKISNLLRKIDDIITLHQRKLDQLKELKKAYLQL MFVSMNTKNNKVPKLRFADFEGDWKQRKLGDFLEDFSKKSTIENEYIILSSTNNGMEIRE GRVSGNSNLGYKIIDDGDLVLSPQNLWLGNININNIGQGLVSPSYKTFKIIDLNKEFLNP QLRTNKMLDQYKNASTQGASIVRRNLELDLFYQIRIFIPKNEEQKQIGLLFRKLNESISL HQSKLDSIKYLKKAYLQNMFI >gi|284795489|gb|ADDQ01000060.1| GENE 33 36614 - 37105 430 163 aa, chain + ## HITS:1 COG:no KEGG:MYPU_3700 NR:ns ## KEGG: MYPU_3700 # Name: not_defined # Def: hypothetical protein # Organism: M.pulmonis # Pathway: not_defined # 7 133 11 140 292 102 43.0 7e-21 MANSLQEEYQKLVKMNYSELVTYLNNKYGPVPGSYFRTPTCKSKNPKITRSMEGLEIHHV GEDNYPNLSTTDYALVAPWEEQLPDRLVYCNLLEHTLLHTLISEKYGTAQPYFTFKAQLV QDIINDYEFQKDWIKVVYSQMKDNKELLIELYDRVNAKSLLNL >gi|284795489|gb|ADDQ01000060.1| GENE 34 37140 - 38069 656 309 aa, chain - ## HITS:1 COG:lin0524 KEGG:ns NR:ns ## COG: lin0524 COG0582 # Protein_GI_number: 16799599 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Listeria innocua # 1 309 1 309 309 490 80.0 1e-138 MVKRKRTEQLFHEYFSEWVELYKVGAIRDISLQKYYIAEQRLAELAPGLKVKHLDRQRYQ QLLNDYALTHERQTTMDFHHQLKGAILDAVDEGLISKNPTRKIVIKGKAPRPKKSKFLNQ FEVQALLKELELGEQLNWDWFILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKN PTGFFQSTKNESSKRKVQIDWQTAMQFSQLIRNMPPMEPIFVKGRVFNSTINSRLKVLCR RAQIPVITVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQETYLHIIQELENQDNDK IMRHLAMLM >gi|284795489|gb|ADDQ01000060.1| GENE 35 38153 - 39370 581 405 aa, chain - ## HITS:1 COG:L0310 KEGG:ns NR:ns ## COG: L0310 COG0732 # Protein_GI_number: 15672634 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Lactococcus lactis # 3 405 6 407 407 132 29.0 1e-30 MKKVPRLRFRGFSEDWELCKLEKLTDFFSGLTYSPDNVQKDGTFVLRSSNVKDNAIISAD NVYVRNEVANSEHVQVGDVIVVVRNGSRSLIGKHAPINREMPNTVIGAFMTGLRSPSPKF LNTLLDTQQFNVEIHKNLGATINQITTGEFKRMHFIVPTDEDEKEKIGSLFRQLDDIITL HQRKLDQLKELKKAYLQVMFPAKDERVPKLRFADFEGEWEQCKLGNILTERNTQQSKSKE YPLVSFTVEDGVTPKTERYEREQLVRGDKSSKKYKVTELNDIVYNPANLKFGAIARNHYG KAVFSPIYITFIVNDKLACSSYVEVFITRKDFISYSLKYQQGTVYERQSVSPENLLNMKF LLPNTKEQEFIGHFFEKLDCNSNFHKKKITQLKNLKKSYLQNMFI >gi|284795489|gb|ADDQ01000060.1| GENE 36 39379 - 40968 1581 529 aa, chain - ## HITS:1 COG:SPy1906 KEGG:ns NR:ns ## COG: SPy1906 COG0286 # Protein_GI_number: 15675719 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Streptococcus pyogenes M1 GAS # 5 521 8 522 526 567 56.0 1e-161 MGAELNQRLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLQTVVTLADESLEEYDTP TKQTELYKELLEDEDSRQDLVDTLVDTLSYDIEPDYLFSSLAEQAKQNVFQLDDLKKAFV YLSSNYKQFNGLFDDVDLQSKKLGSDDQQRNVTITEVLKKLNDIDVTAHEGDVIGDAYEF LISQFASEAGKKAGEFYTPHQVSDMMARIVALGQEDKKLFSVFDPTMGSGSLMLNVRNYL NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAEDMNLRNGDTLNKDWPTDEPYTFDSVVM NPPYSAKWSADASFLDDSRFNRYGKLAPKSKADFAFLLHGYYHLKDSGTMAIVLPHGVLF RGAAEGVIRKKLLEDGSIYAVIGMPANLFFGTSIPTTVIILKKNRDNRDVLFIDASKEFT KGKNQNKLAPEHIDKIVSTYIERQDVEKYAHVATFEEIVENDYNLNIPRYVDTFEEEPPV DLVALNNEIKSTNQEIKKVEAELLAMLDDLVVTEETQALIDATKEVFGG >gi|284795489|gb|ADDQ01000060.1| GENE 37 41136 - 42041 944 301 aa, chain - ## HITS:1 COG:no KEGG:SPCG_0521 NR:ns ## KEGG: SPCG_0521 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_CGSP14 # Pathway: not_defined # 1 254 13 268 271 253 49.0 6e-66 MEEEVLALKVVNESLKLPGVKVNRNAFLTKMFQDKVDNVQELFDDGPEKVLSKKELDRAA QKCINQAVMQSSAISFATGIPGGLAMAATIPADIAQFYGYSLKLAQEISYIYGYHDLWNN QDELTEEAKNTLILYLGIMLGVTSAGSVVRILSNRLSIQALKRLPQKALTKTFLFPILKK ILAVFGTKLTKATFAKGVSKAIPVLGGVVSGGINYASMKPMAMRLKDELSKNIGYTQEDA EKDLEILEADFEVISEQPETETTKHADDIFSKLERAHALFEKKILTEAEYIKLKETIIQE G >gi|284795489|gb|ADDQ01000060.1| GENE 38 42075 - 43745 1379 556 aa, chain - ## HITS:1 COG:BS_yunI KEGG:ns NR:ns ## COG: BS_yunI COG2508 # Protein_GI_number: 16080295 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Bacillus subtilis # 2 550 1 527 531 123 23.0 9e-28 MLKVSDLLTLEELPGITLVAGHKNQDQPILKVNILENPDILDWLTAGELLLTTGYIFKDD RKLQKNFLKELAKHHCAALGFKTQRYFEEVPPDLIKLADEMNVPILAIPYNYTFSQIADV LKSRVTLEQFDMNAQETALHNKIYQILETGSSSFHLLQDLAETIQNPVLLLNDHFEGVNF FDLPKNPIRISSILEDRQETSEFQKQLLEQSHPLLRFYQEPIHLQLKLQNQVVPIEIYPI KKKNVILYYLLVWNTLAPLRPVDVAHFKITAHYLLLQLQLEYSRKFEEYQQRNELFFKLI AHEKRDQAVFQQFQQYYRLAIDKPYAILLISLTLNERQRQERMSILGNQLNQVILGDKQK IVCIEIDSSFVLLVEDPPEKEGDYLKMMQRLAQSSINQLMKVQEDVELFLTIGPKIQGLT QIHESYQQAIDILAFQRQFVAEEPEMRIASYANFHFRQTLQRYFLEEGQATLRKKYLQPL QKSDQQQHTDFVHTLNVYFQSKRNLSQTAKKLFIHRNTLLQRLEKIEQLVLLDFDKEVDL LALEVALFLKDKRSTL >gi|284795489|gb|ADDQ01000060.1| GENE 39 43876 - 44742 425 288 aa, chain + ## HITS:1 COG:no KEGG:EF3009 NR:ns ## KEGG: EF3009 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 288 1 288 288 552 98.0 1e-156 MTKILAYDQTILSKLPHQTLTSLQCFTHAINYGHVDTQEILLTISTHPEHIAPNTIILDE KKLSHFADLPVQIEPLFIRLGRRHLTLADAQIWQPTPLYLTPSKTKIAIFLTYIQQTRFN PWQTLFPASSSTFLFDSYSRTQIQKEMIHFQQAWAQKSFKIALDCLTKILGLGIGLTPTG DDFITGLLASFSALQQLPSNFQQLAVLAKERTNAVSYAEIHEAVNERFSQLVQRVFLSIE SGNTNEMAQAVSALEEVGSTSGSDILCGIIFGLKLFCEENNHDNSNSN >gi|284795489|gb|ADDQ01000060.1| GENE 40 44720 - 46279 1813 519 aa, chain + ## HITS:1 COG:ECs0369 KEGG:ns NR:ns ## COG: ECs0369 COG0074 # Protein_GI_number: 15829623 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, alpha subunit # Organism: Escherichia coli O157:H7 # 1 515 1 514 515 511 52.0 1e-144 MTIQTVIKENAYFDSVTLMTISTRANELAGVKTAMIGMGTDMNLEVIRNVGLYTPALDHV TTGDLLIVLDLDDQANSEEILQQVDELFTKKKKTASSEVTYKTLDSALHEEPDANLVVIS VNGKFAAREAHKALDQQKHVMLFSDNVTVDEELALKQKAHEKELFVMGPDCGTAIINGVG LCFANEVRSGDIGIVGASGTGSQEVSVQIHKYGYGISQLIGTGGRDLSAEIGGLMMLDGL DALMVDEQTKAILLISKPPAPEVTEKILKKLAVSTKPVVIYFIGSEQTERKIDNVTFATS SLDAVQKVIQFSQTQEAETSLYQNPTGATLTAIQQQQAPSQKFVRGLFCGGTLCDELLYA LTEVSDDVYSNIHKIPERQLANPDHSQAHTLIDFGDDRFTEGRPHPMIDPTSRITRILQE AKDPEVAVLALDFELGYGSHENPVGVLAEALKEAKAIAKADGRELAIIGYVLGTEEDPQD IHEQRKILEDLEILVVDSSHQLCEATKTFVKGANEHEQK >gi|284795489|gb|ADDQ01000060.1| GENE 41 46266 - 47690 1539 474 aa, chain + ## HITS:1 COG:no KEGG:EF3011 NR:ns ## KEGG: EF3011 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 474 1 474 474 960 99.0 0 MSRNDLFKQPLDTINVGIDFIHEDMKKQGIPSHQVNWAPPANGDPELLKLLDQLKNPTLY EKIQQANEEAVTRIIQSKPILVGFDKAINVMPDMTETTILHAGPPITYENMCGPMKGAVQ GALVFEGLAKDLADADRVARSGAITFSPCHEHDAVGSMAGVTSPNMYVHIIKNETYGNTA FTNLSEQLAKVLRFGANDQSVVDRLIWMRDVLGPLLHDAMTFCPEGIDLRLMLSQALHMG DECHNRNVAGSTLLVQALTPYMVQTDFSREQLKEVFEFLGSSDYFSGPTWMGAAKCALDA GHNVENSTIVTTMCRNGVEFGIRVSGIGGNHWFTGPAQRVIGPMFAGYTQEDAGLDMGDS AITETYGVGGFAMAAAPAIVPLVGGTVAEALNYSKEMLEITTKENPNVTIPVLDFMGIPS GIDVLKVLETGMLPVINTAIAHKEPGIGMIGAGLTNPPANVFNEALKALVAKIN >gi|284795489|gb|ADDQ01000060.1| GENE 42 47733 - 48914 751 393 aa, chain + ## HITS:1 COG:no KEGG:EF3012 NR:ns ## KEGG: EF3012 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 393 1 393 393 704 98.0 0 MKNKSINYEAVLALVVKIFLGMFLYWIMNGFRHVSNFFPYNDVVTKVNQQGFYKFIYFVM NFTEGEFYGGLFTTLFLLIGGLIAWQLYRKNSKWQGFAIAGGSGAWPWVLASQLLSLFLT IYVFDFTRFFTKEVLWLPTFIVVVGTPPALTLVYGPGWKKLGTISLLSALFTFPFANWLN AQLMPLLNVPGTVSNVTTMAFVGWIVSAICHQLPWMVPSVAPIAQKRQKQPKIENTQTFQ WSIRRTFADFSEAWFYGNELVGGLVILGVLTDWFVNINHITNGSGLVPDILMGQMIASAV GVFLYRKHFAEEGWYPTFMPLVSIVPGVILMMGGGFWLSLTIAVLAGISAAPVGSYIAKR LPPFVPGAVGFVSGMAVVTILLSAVLHTFDIFV >gi|284795489|gb|ADDQ01000060.1| GENE 43 49054 - 50502 886 482 aa, chain + ## HITS:1 COG:no KEGG:EF3013 NR:ns ## KEGG: EF3013 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 482 1 482 482 818 98.0 0 MYSMLKRVITEKDLLRQIRLLEQLLNVPQLTAKRLATQIQTTERTVFSDLQYIRSQLPAD WSIETDSSGIRLRNQGNAQTNELWSLFLPQSISIQLLKELLFTKELVTTSFLSTSGVSYE TLKRHIKKMNQALRDFHLMIQLTTTTIQLIGEESNIRIFYHRLLVPFTHNNYFFDDYSIH EEHYFQFLKQVYSSELTVETEEIFGACWFFINTIRNKANCRVSQFSFDSKDVLFQLYQPS LAKLYASEGIYLQGEESFFAFFCFLESWNYDNVYGETLASALHTHYSQLRKSLQQFVTNL STEEARPDLIQTNLLDNLLLLFIKYTESPTLSEQFQLEYQELMTEQAAEDLALSKSNQEL LEILSRYTTIEEPTYFLSLASLLEKQASYSIQAQTMTAYFLFQGEPAWKAFLQQELAAYL GTRVKLQAIEYVELSQLTLNEADIIISNFPLDHLDLPVFYLSLIPTKNELRRLAELTLHS YF >gi|284795489|gb|ADDQ01000060.1| GENE 44 50508 - 53060 2478 850 aa, chain - ## HITS:1 COG:YPO0451 KEGG:ns NR:ns ## COG: YPO0451 COG0474 # Protein_GI_number: 16120780 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Yersinia pestis # 3 837 19 901 908 693 43.0 0 MKWYQLSSTKVIEQTKTKQTGLSSEERQQRLQTNGPNKIEEKQQLKTWQKLAKHFTDLLM MVLLAAAILKFATGEVVEGSIIFLVVLVNGFVGYWQERKAEESLDGLKQMMGQEAVVLID GQKTTVSSETLVLGDVVTLQAGDVVPADLRLYDVHNLMIEESILTGESEAVEKITGSLNE ELPTGDQKNLAFSGTLVQAGSALGVVVETGDSTEVGKINHALQSVDQKTTPLVRKMHQLN KQIFQGIMVLIVFLIFFTTFRHGMEWSLLFSAMIALIVAMIPEGLPAVLTMILSMGVHEM ARENAIIKGMPSVETLGSMTVICSDKTGTLTKNEMTVMDVVTEEMTIVKEIMANCQELKL QDQQKIADLQGNPTELALLQYVDQDQLSLRPVEKKIPFSSSYKYMATRHPQAEGSIIYVK GAPEVLLQLSTLSDNQKGAWQAQAAQLAQKGQRVLGFAYKTVTSQQELTHETLSGLTFAG LAGIIDPPKESAIQAVKESQEAGISVKMITGDHKDTAQAIGEQVGLKHTKKVLEGLEIDV MSDEELAQHVQKVDVFARTTPEHKLRIVTALQNNGEIVGMTGDGVNDAPALKKADVGIAM GIKGSEVTKQAADMVLADDNFHTIAKAVKEGRRIFDNLKKTITFFLPTSLAQGLIVVWAL LMNHPLPLTPVQILWVNMVTTITLSYALGFEKASADTMKRPPRDVNEGILTKYSIFRIVY VSVLIMVPGYLMALQFEGQALQQTFLLQSIVLAQAAYMINCRKLVDPSLSTGFFQNKVLF ASLGILFLLQALVVYWPVAQQLIGTTSLNGLQLAMIFVHVVSLFFLVEGEKYITKRFMTK ESQKTSECPR >gi|284795489|gb|ADDQ01000060.1| GENE 45 53210 - 54472 1431 420 aa, chain - ## HITS:1 COG:VCA0036 KEGG:ns NR:ns ## COG: VCA0036 COG3633 # Protein_GI_number: 15600807 # Func_class: E Amino acid transport and metabolism # Function: Na+/serine symporter # Organism: Vibrio cholerae # 9 397 14 403 405 365 55.0 1e-101 MVKAIRKLSLIQKIMIGIVIGTTLGFLVPEWTFISVLGELFVGALKAIAPILVFVLIIAS LAQQKAGAKTYVGSILVVYLLATFLAAVVAVTASYLFPVKIVLEAAQEAQAAPTQLSDVL SNVLTSVVQNPIQAMIEGNYLSVLFWSSLIGIGLRQSSVATKDVIANLSTGITTVVQMII GIAPIGILGLVFHSVTTTGIAGLAKYGQLLLLLIGTMAVVALVVYPAIVFWNIRQNPYPL VFFVLKESAIPAFFTRSSAANIPINMELAKAMDLNEESYAVSIPLGATINMGGAAITITI MTLAAVHTLGMSVPIYLALLLSIIAAVSACGASGIAGGSLLLIPLACSLFGISNDIAMQV VGVGFIVGVVQDSIETALNSSSDLLFTTSVELADRRKNGEIIDVKALIGKSQLVVEQENI >gi|284795489|gb|ADDQ01000060.1| GENE 46 54601 - 54984 337 127 aa, chain - ## HITS:1 COG:MA2218 KEGG:ns NR:ns ## COG: MA2218 COG1226 # Protein_GI_number: 20091059 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, predicted NAD-binding component # Organism: Methanosarcina acetivorans str.C2A # 2 118 1 117 136 83 38.0 9e-17 MLSLLISVKKLFSSFLGILKKEDTRALFFLLATTLLSGTIFYSTVEKLSPLDSLYLSFMT LTTIGYGDVHPVTDLGKIFTMIYATVGLGIMAMFILVVAKSYLYSKQSHHHHHHKNKEHS AEKSSEK >gi|284795489|gb|ADDQ01000060.1| GENE 47 55101 - 56060 897 319 aa, chain - ## HITS:1 COG:DR0508 KEGG:ns NR:ns ## COG: DR0508 COG1715 # Protein_GI_number: 15805535 # Func_class: V Defense mechanisms # Function: Restriction endonuclease # Organism: Deinococcus radiodurans # 8 316 16 336 336 209 36.0 5e-54 MNKDWKKLKASNEGIPTFESLMPYTLEVLKDGDVLNRKIILKRIIQFLDIPDEIASMMYP NYPQGDGILANRFSFAISDLYKARAVERIKRGMYQITELGLDLLNNYGEKINRKLLEQQP AYQKYMQELVERNNRVGTTTIEASAPIESAKIDIEDMINNQNNQIAIELLNKVRQVEPVF FEKLVIHLLETMGYSGKHGTAVVTSKSNDGGIDGIINQDPLGTSTVYVQAKRYHETNTIG RPAIQGFYGALAAVNADRGVFITTSSFSANAHEFAKNQGIVLIDGIKLTELMLEFGVGVE IAKTYKLFRIDNDYFEDEL >gi|284795489|gb|ADDQ01000060.1| GENE 48 56084 - 56824 728 246 aa, chain - ## HITS:1 COG:BH0167 KEGG:ns NR:ns ## COG: BH0167 COG0101 # Protein_GI_number: 15612730 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Bacillus halodurans # 1 238 1 238 263 204 44.0 1e-52 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARG QVANFKTTSSLTTTEMLSFLNRYLPGDIVVKEVTEMPERFHARYNATGKQYSYYVWNSPI PNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIERNG EMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGLFL DEVYYK >gi|284795489|gb|ADDQ01000060.1| GENE 49 56936 - 58717 1915 593 aa, chain - ## HITS:1 COG:no KEGG:EF3018 NR:ns ## KEGG: EF3018 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 593 1 593 593 1102 99.0 0 MFFNFIGLTLFFGIGILVANGAKIVANKGKKSKGTILLMAMELLLLGIFLFVTLPSKNLS TVLWINLIGAVIASGVLLSTRLASKVEVPGIQKGRKEVGKNTNKTANKDWSGKILGVAVL AMILLTIVSSITRISSIDEIYQTIPLKTEEKAEVLTSAKETPIAIAPQTAKRKMLQKFSV IPNSNMFTLDGITAQVVNGEYVYVATVEFNGFFKWLKLGEVPGYFIISATDINAQPEFVE KPIVYTPSAYFGKDAARKIYSAYPGYAATGTINLELDDQGNPYYIQTLYKEYGVSGRMHY NEFKTAVLNATTGEVNVYDSQKAPSFVDAPITSSAANSLNEFFGRYSQGWWNQTMFGAKK DVKIPTENGIYASGQITPMMNKEGNQLLYFTDFTSSEKDQDSALGYSLINARTGQVTYYR DTKVGIMDSDGAISIASKIYPEKKWKASMPVLYNIDGVPTWIVSLMDSKGIFKKYVYINA VDNDIVIDADTAQGALDAYRIELVTKGSNNENTDKANLKTMQGKVARVSVVAGEAQTVVS FLLEDEKTIFSVTTNNSPLALFLKEGDQVTFKAVVTENAKAANVEELKIAGLN >gi|284795489|gb|ADDQ01000060.1| GENE 50 58869 - 59795 753 308 aa, chain - ## HITS:1 COG:no KEGG:EF3019 NR:ns ## KEGG: EF3019 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 308 1 308 308 586 99.0 1e-166 MDLKKSIRKAKRKQFIVIGAITVVSFAVLFVGFFVGMDKLSTKNYHTLLEVINDQEMIAS PNTQLDSQVIANSSPFGGEVVTNRSKNIDGYTVEWSNLRSRYSFFRNSIDWNEVYPGSYY SSKNFYEYNRQTKQKVASFYNPAITNYYGGIKNELTELDKMENQVAEVAISFDKPYPYEE VRKMLPSNVNLVWLYVYSETVNEKEGPSGTLPYGFQLSMDDQNEIFDPENDKQHFFETLE KSPMFADNQEGQKFIQQNKNKKVEKLPIWGVMLTGQTKNFKALQNEPFVRGASIGVTAPI VPYIQPEK >gi|284795489|gb|ADDQ01000060.1| GENE 51 59798 - 60262 478 154 aa, chain - ## HITS:1 COG:L0142 KEGG:ns NR:ns ## COG: L0142 COG1595 # Protein_GI_number: 15674148 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Lactococcus lactis # 17 154 17 156 164 61 33.0 6e-10 MKKEANFDEVLFSLGQEVIQVLIRRGASLEDAQDAVSQTYTTIFSILPEITSENLRPWFF RVTFNYYITMYRKKKRERTFVANSHPVKSIEKMEGQELLLLIDSLKDEEQELLLLKYYYQ LSYAEIALILELSVENVRKKLYRTRQKLKKELEE >gi|284795489|gb|ADDQ01000060.1| GENE 52 60400 - 60909 639 169 aa, chain - ## HITS:1 COG:no KEGG:EF3021 NR:ns ## KEGG: EF3021 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 169 1 169 169 293 99.0 2e-78 MKVTQLSSETLDRAHERFEETLAQMTVAEANTMPAPLIKSVTWLMWHTARELDLQISALN HSEPLWLSQHWTEKFALDLPDETEDWHHTPEEAAKVVVAEKQLLSDYLAASVALTKSYLD QIKEEQLSDVIDKNWTPPVTRQVRLVSAIDDAVMHSGQAVYTRRLVIGK >gi|284795489|gb|ADDQ01000060.1| GENE 53 61257 - 62645 1624 462 aa, chain + ## HITS:1 COG:BH3820 KEGG:ns NR:ns ## COG: BH3820 COG1301 # Protein_GI_number: 15616382 # Func_class: C Energy production and conversion # Function: Na+/H+-dicarboxylate symporters # Organism: Bacillus halodurans # 11 441 1 399 413 175 32.0 2e-43 MEKKKREVKGISFTKKMVISLVGGLIVGLGFLFLREHLIRSNQGAVWQTINQILFQDISD PEKGQSAIGLFYIIGQLFINGLQLVIVPMVFTSITLAICHITDTQKLGRISYKTIFGFLS MSLIALLTAGIVGYSVYLTGAFNVSLSETLAPVEVSTSGNPLMVIVNAVTKNIGSAFSDN GAILAVVVLAVITGLCINALGDKIRVFKRLIEEVNAMVTLFLTFVITKFAPIAVFMLLVR TFASYGIDYLKPALVYVVTTTATLLAFLMIGYPLFILFATKLNPVPFIKKIMKVVVFGFS TSSSAATLPLNTKTTVEELGVDSDVAAFVLPLGMTINMNGTAIMQVIAAIFVAGVAGYEV TPANIALIAILALMSSIGTPAAPGAGGIILFTILTGLNYNNEIAIATYSLILAINRPIEM LVTSLNVVGDSATAIYVAHSEDLLDEATYLTDVADLQNAEAE >gi|284795489|gb|ADDQ01000060.1| GENE 54 62715 - 63047 224 110 aa, chain - ## HITS:1 COG:no KEGG:EF3023 NR:ns ## KEGG: EF3023 # Name: not_defined # Def: polysaccharide lyase family protein 8 # Organism: E.faecalis # Pathway: not_defined # 1 110 1263 1372 1372 190 96.0 1e-47 MADQTTATQAEVDQAEEKLRSAVKQLTLKNSGENKKEQKNGGNNGHLNTSTGVDQTGTKQ VKPSSQGGFRKASQFLPSTGEKKSIALVIIGLLVIASGCLLVFRESKSKK Prediction of potential genes in microbial genomes Time: Sun May 15 13:05:58 2011 Seq name: gi|284795488|gb|ADDQ01000061.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont147.1, whole genome shotgun sequence Length of sequence - 10688 bp Number of predicted genes - 13, with homology - 13 Number of transcription units - 4, operones - 3 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 268 179 ## EF_B0033 hypothetical protein + Term 283 - 317 6.2 2 2 Op 1 . - CDS 784 - 1134 309 ## EF_B0031 hypothetical protein 3 2 Op 2 . - CDS 1167 - 2852 1548 ## COG3843 Type IV secretory pathway, VirD2 components (relaxase) 4 2 Op 3 . - CDS 2853 - 3209 166 ## EF_B0029 hypothetical protein - Prom 3243 - 3302 2.7 5 3 Op 1 . - CDS 3455 - 3727 376 ## EF_B0027 LtrD-related protein, putative 6 3 Op 2 . - CDS 3760 - 5919 1610 ## EF_B0026 hypothetical protein 7 3 Op 3 . - CDS 5976 - 6272 290 ## EF0161 hypothetical protein 8 3 Op 4 . - CDS 6250 - 6585 376 ## gi|256959691|ref|ZP_05563862.1| predicted protein 9 3 Op 5 . - CDS 6602 - 8425 1432 ## COG3505 Type IV secretory pathway, VirD4 components 10 3 Op 6 . - CDS 8425 - 8910 518 ## EF_B0024 hypothetical protein - Prom 8937 - 8996 4.1 - Term 9023 - 9063 0.8 11 4 Op 1 . - CDS 9068 - 9676 546 ## EF_B0023 hypothetical protein 12 4 Op 2 . - CDS 9660 - 9905 376 ## EF_B0022 hypothetical protein 13 4 Op 3 . - CDS 9892 - 10518 627 ## EF_B0021 hypothetical protein - Prom 10552 - 10611 2.0 Predicted protein(s) >gi|284795488|gb|ADDQ01000061.1| GENE 1 2 - 268 179 88 aa, chain + ## HITS:1 COG:no KEGG:EF_B0033 NR:ns ## KEGG: EF_B0033 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 88 360 447 447 167 98.0 1e-40 SLQEIIQEGSILRHCVGSQHYIERHTQGKTTIVFIRRKEKPDMPYFTLEYRNQQVIQIQG KCNRQEVPKKIKQAVRQWQENLQHALSS >gi|284795488|gb|ADDQ01000061.1| GENE 2 784 - 1134 309 116 aa, chain - ## HITS:1 COG:no KEGG:EF_B0031 NR:ns ## KEGG: EF_B0031 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 8 116 1 109 109 118 77.0 8e-26 MLILKRGLSVVLFLPCFILRILFRYIGLLTILTSGFTTTLILIVARILAFIFLVYPIVIL TTEELRMEWASWIAWLLFGLIVLFFHYLAAWNEDLGSWFLDFSNWLSRVPSKLWAE >gi|284795488|gb|ADDQ01000061.1| GENE 3 1167 - 2852 1548 561 aa, chain - ## HITS:1 COG:SP1056_1 KEGG:ns NR:ns ## COG: SP1056_1 COG3843 # Protein_GI_number: 15900926 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirD2 components (relaxase) # Organism: Streptococcus pneumoniae TIGR4 # 1 285 1 251 402 139 34.0 2e-32 MVYTKHFVIHTFDKLNNACSYIENAEKTEVTNDNPSEHLEHLFQYIVNDDKTYMKKLVSG HGIVDPTNPYEEFKLTKLQAAIQRKIGYTFDPKSERLLPPTLTELEKGNAVLAHHLIQSF SPEDDLTPEKIHEIGYNTVMELTGGEYEFVIATHVDKEHLHNHIIFSSTNLKTGKAFRWQ KGTKKVFEQISDKIAAKEGAKIIEKSPKNSHKKYTMWETESLYKEKIKSRLDFLLEQSSS INDFLEKAEALNLSVDFSKKWTTYRLLDEPQIKNTRSRSLSKSDPTRYNYEKIVERLKEN KSVLTLKEVVEKYVEKSEKSKNEFDYQLTIDEWQISHKTTRGYYVNVDFGFGERGKVFIG AYKVDPLENGQYNIYVKRKDFFYLMNEKNADRNRYMTGETLIKQLRLYNGQTPLKKEPVM RTIDELVNAINFLAANEIEDTRQLELLEEKLEAAFLEAEETLETLDEKMLELHQLSNLLL ENELNGELELIQQKLKTLLPDATLAEFSYEDVRGEIEAIKTSQSLLENKLERTRNEINQL HEIQAVQKKETANQNNVKPKL >gi|284795488|gb|ADDQ01000061.1| GENE 4 2853 - 3209 166 118 aa, chain - ## HITS:1 COG:no KEGG:EF_B0029 NR:ns ## KEGG: EF_B0029 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 118 1 118 118 167 94.0 8e-41 MENKQKLKRPIQRIVRLSEEENNLIKRKIEESFFPNFQNFALHLLIQGEIRHVDYSELNR LTTEIHKIGININQMARLANQFHEISSEDIKDLTDKVQSLNALVQSELNKLIKRKEQS >gi|284795488|gb|ADDQ01000061.1| GENE 5 3455 - 3727 376 90 aa, chain - ## HITS:1 COG:no KEGG:EF_B0027 NR:ns ## KEGG: EF_B0027 # Name: not_defined # Def: LtrD-related protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 90 1 90 90 145 98.0 6e-34 MDQLTDESKFILTQFFLADPLSDQPRVHQKKKEKSKGTVLKELDTLIHDFKEKELEIDLF PYEEAATYLRKLKGNDAYLVFLDELLAPYQ >gi|284795488|gb|ADDQ01000061.1| GENE 6 3760 - 5919 1610 719 aa, chain - ## HITS:1 COG:no KEGG:EF_B0026 NR:ns ## KEGG: EF_B0026 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 719 1 719 719 1294 98.0 0 MPTTHTQRQKILEEIEQKSIVDVAESLGITLVRQGQSYTWSEHDSFVLTPKKNAFYWNSR QVGGGSIKLVQVIKECTYAEALQYLQTVEAGAVETLKEPTPTNFHYYMKEHTQQNATIDY LLQERKLSRETIDFFFEQNLMAQSTYTDKETGQSEPVIVFKHVGLEEKIKGVALQGIWEN KKLHGERGRLKRVWGNGYYGLTVRVGYPPKIAEATSEKPIKIIVFEAPIDLMSYYELKKE TIGDAVLFCANGLKKGAVSTLIANEIGSYVKEEEKPTVLEQLEKSKLTTEKVQLVLAVDN DEAGKKFIQQFSNSWCPITLDQPKLIEGKSKTDWNDILKQTKNEKKKKEAKLKRQEAKKR SRERNKEMSEKTQMKQKSQPELTLEEIIKKKDYQKLSQHLNDGIKEYLTSDTFKNYLDFA SKFHKYSSKNIRLLLAQNPNIRRVAGYNAWKKLDRQVKKGSKALYVYAPYFKDKVDKNGK KVTDENGEIVKETRYFLTPVFDVEQTTGAELPQLVYNLEENLSDGKTFTRTYNALVEICP VPVTVTSIASGANGYYDPTKKEIVLQQHLGEVMTLKVLLHEMTHAMLHPDSQAIFGDDVY SRQEFEAESVAYIVSRHLGLDTSSYSFGYLSSWTKQGEKLEEFTQSLETITKEARTLIEK ADHALSIEKGIQLPQNKFEERLLNAKKKETEVGKSQANEQKRQQNEPKISAQIANSTRF >gi|284795488|gb|ADDQ01000061.1| GENE 7 5976 - 6272 290 98 aa, chain - ## HITS:1 COG:no KEGG:EF0161 NR:ns ## KEGG: EF0161 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 2 97 1 95 96 85 63.0 6e-16 MMRKQEIEVVSLNIIKYYFLAIRELDFPGYDKPFKQIDVELFIKLADYMENLPNLTDLLI IDYLEMLKDYLLSVENEKYSRTVQRMVRLMKEELEKVS >gi|284795488|gb|ADDQ01000061.1| GENE 8 6250 - 6585 376 111 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256959691|ref|ZP_05563862.1| ## NR: gi|256959691|ref|ZP_05563862.1| predicted protein [Enterococcus faecalis Merz96] # 1 111 1 111 111 174 100.0 2e-42 MEYHQKLKRATTIEEVQEIYNEEFKNMVAEIEEQFIAEGRGQQLVYADGCIDPSLTIADI HLLIYAENQAEQLSKNKSEGLMIESNHDSFIEERLEELKKGMIVNDEKTRN >gi|284795488|gb|ADDQ01000061.1| GENE 9 6602 - 8425 1432 607 aa, chain - ## HITS:1 COG:CAC1969 KEGG:ns NR:ns ## COG: CAC1969 COG3505 # Protein_GI_number: 15895240 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirD4 components # Organism: Clostridium acetobutylicum # 66 509 78 506 591 148 28.0 3e-35 MQTYKKELKPYLYLGVFLFVIGFGIGNFFWLLPGTDYFSKTNYLFTKDILTYIEQTFYRF FITPSLLGFSVGILGFLLGLLMYVRDNDRGIYRHGEEYGSARFATPAEMKKYEDPIPENN IIVSKHVKISLFNKLLPIKLQKKKNIAILGDSGAAKTLAFIKTNLMQRHASFITTDPDGG ILPEIGLLLKKGKYKIKVLDLNTLSNSDTFNVFEYMHSELDVDRVLEAVTEATKEVEKTT GDDFWIKAEGLLVRSLIAYLWFDGRRNDYTPHLGMIADMLRHLKRKDKNVPSPVEEWFEE LNEAIPDNYAYRQWTLFNNLYESETRASVLGIAAARYSVFDHEEVVNMIRTDTMDIDSWN EEKTAVFIAIPETNTSFNFIAALMFATVGEVLRNKSDQVRLGKRVLEEGKELLHVRFLID EFANIGRIPHFEKMLTTFRKREMSFTIVLQSLNQLQTLYPKGWQNILNGCACLLYLGGDE EETTKYLSARAGKQTLSIRKHSMNKGNQGGGSENRDKYGRDLIDRSEVALIGGDECLVFI SKEHVFKDKKFYAFQHDRADELATGPTDDKWYTWRRYMTDEEAILDKISATDIIDHGTVA DERTEVN >gi|284795488|gb|ADDQ01000061.1| GENE 10 8425 - 8910 518 161 aa, chain - ## HITS:1 COG:no KEGG:EF_B0024 NR:ns ## KEGG: EF_B0024 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 161 2 162 162 271 98.0 4e-72 MEQREIVHRYYVLGTSTLDKVLKVLLNLSSDGVLALKDKFLPLKGENNLYKLMNREDPLT SAQLHEKVNLNKLKEQLEAQGLPFAFKETKEGTNFYFRVKDTELAKKALERVLTDIKKNP QMILRKPNTMTFDERLAYTAANKKYVGKIDQTKTITKGRKL >gi|284795488|gb|ADDQ01000061.1| GENE 11 9068 - 9676 546 202 aa, chain - ## HITS:1 COG:no KEGG:EF_B0023 NR:ns ## KEGG: EF_B0023 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 202 1 202 202 288 96.0 1e-76 MFIGNKTTYRYELLHSKNIKGEVIDSTATLVRYVIGVNNDLIKKEEEGWLYVEKIKEGKQ EDQILYGKRIDLPILEDNPYFHDLLDPFDTKKVIPFVELLPSAVENQVKLEEKNKETQDI VELEKNNKTTITTEEKETTELKEQPDEIADKETQKKILEQKIQFKKDELATLTEEIATKQ EEINDLEQKLSTFSKKPEGLYL >gi|284795488|gb|ADDQ01000061.1| GENE 12 9660 - 9905 376 81 aa, chain - ## HITS:1 COG:no KEGG:EF_B0022 NR:ns ## KEGG: EF_B0022 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 81 4 84 84 81 98.0 7e-15 MGKSKVSELEKKKDRVEKELNKANERLDTLKQSIAKKENELKQIEAEIVSALLTENNLSF SELTALLSEKESGGEASVYRE >gi|284795488|gb|ADDQ01000061.1| GENE 13 9892 - 10518 627 208 aa, chain - ## HITS:1 COG:no KEGG:EF_B0021 NR:ns ## KEGG: EF_B0021 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 208 1 208 208 296 98.0 3e-79 MYNMEKLSRYKKIVFVGGSLLLIVLIFLIGLSVGQRKQVNTNEKQVKVEKKEELTTSTVK KFLIAYYTKKDLGENRNRYEPLVTSAMYNELVNVEKQPVNQAYKGYVVNQVLDTYKIYID TENNEVIVDVTYKNTQRTKRNNDEGALKNQSNQEALKLTFVKQGANFLVDKMAPVTLTNE LQEEPNSYNTHVVTTEESAKESANSGEK Prediction of potential genes in microbial genomes Time: Sun May 15 13:06:36 2011 Seq name: gi|284795487|gb|ADDQ01000062.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont148.1, whole genome shotgun sequence Length of sequence - 8425 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 4, operones - 2 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 54 - 1244 1339 ## COG2814 Arabinose efflux permease - Prom 1334 - 1393 2.7 + Prom 1282 - 1341 8.6 2 2 Tu 1 . + CDS 1389 - 1745 441 ## COG1733 Predicted transcriptional regulators + Term 1796 - 1848 17.0 - Term 1786 - 1833 13.5 3 3 Op 1 11/0.000 - CDS 1839 - 2669 1013 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 4 3 Op 2 6/0.000 - CDS 2666 - 3301 576 ## COG0352 Thiamine monophosphate synthase 5 3 Op 3 1/0.500 - CDS 3298 - 4116 750 ## COG2145 Hydroxyethylthiazole kinase, sugar kinase family 6 3 Op 4 . - CDS 4100 - 4630 616 ## COG4732 Predicted membrane protein - Prom 4824 - 4883 2.8 - Term 4881 - 4942 19.0 7 4 Op 1 30/0.000 - CDS 4964 - 5275 597 ## COG0718 Uncharacterized protein conserved in bacteria 8 4 Op 2 . - CDS 5299 - 7059 2155 ## COG2812 DNA polymerase III, gamma/tau subunits 9 4 Op 3 . - CDS 7131 - 8345 1001 ## COG4468 Galactose-1-phosphate uridyltransferase Predicted protein(s) >gi|284795487|gb|ADDQ01000062.1| GENE 1 54 - 1244 1339 396 aa, chain - ## HITS:1 COG:L131423 KEGG:ns NR:ns ## COG: L131423 COG2814 # Protein_GI_number: 15672314 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Lactococcus lactis # 3 392 2 392 393 426 70.0 1e-119 MEKKISPNLTLFALAINAFAIGSTEFISVGLLPMIVKSFHISLSQAGLTVSLYALGVTIG APLLTILTGKWNRRSLMLGIMLLFISGNLIAAFAPTFIILLVGRILSALAHGIFMSVSTV IAADVVPPSRRASAIAIMFTGLTVATVTGVPLGTFIGQQTAWHMSFLFIASIGLVGLIAS YFLVPKNLPIPGKVDLKGITRIFTNKPLVFSFLITAFGYGGTFAAYTYLSPLLENLGFSA NAVVIILVVYGVMVAIGNTVGGHWANKKPLDSLVKMFSLLILSLVFLFITVLMDNSLLGL LASLMLGLFAFMNVPGLQLYVVELAEKYVPEDITLASAFNIAAFNIGITVGSMTGGVVTD HLSVTYTPIFGGFIVLIAVLFVLYIRKQEEQKNNYL >gi|284795487|gb|ADDQ01000062.1| GENE 2 1389 - 1745 441 118 aa, chain + ## HITS:1 COG:L133547 KEGG:ns NR:ns ## COG: L133547 COG1733 # Protein_GI_number: 15672316 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 4 112 3 111 115 162 72.0 1e-40 METRTYAIGVEATMDVIGGKWKPIILCNLRHGAMRPSDLKRGITGISQKMLTQQLRELEE DNIIERKVYNQVPPKVEYYLSDYGQSLSAVLDNLCNWGESHVAHLQEQGQEIYLKCED >gi|284795487|gb|ADDQ01000062.1| GENE 3 1839 - 2669 1013 276 aa, chain - ## HITS:1 COG:L0200 KEGG:ns NR:ns ## COG: L0200 COG0351 # Protein_GI_number: 15673245 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Lactococcus lactis # 9 269 6 266 267 256 53.0 4e-68 MTEYNLTPQVVTIAGSDSGGGAGMQADLKTFQARQAFGLNIVIALTAQNTYGVQDSLPIP SSFIDAQFQSLAADFKIGAAKTGMLADSERVEAVVRNLQKVDFGPLIVDPVMVAKGGHHL LEAEAVQTIKEQLLPLATVVTPNLPEAEVLLETTIKTEQEMQTAAKKLQQLGTKNIIMKG GHSTNQQAADYVLMEDGSSFWLSAPRIVTKNTHGTGDTFSACIAAELAKGTPLEAAIVIG KQFIQGAISQAISVGHGHGPTNHWAQLTQDIQVIKA >gi|284795487|gb|ADDQ01000062.1| GENE 4 2666 - 3301 576 211 aa, chain - ## HITS:1 COG:SP0725 KEGG:ns NR:ns ## COG: SP0725 COG0352 # Protein_GI_number: 15900622 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate synthase # Organism: Streptococcus pneumoniae TIGR4 # 2 207 3 209 210 241 60.0 1e-63 MREQLKVYLVTGRYDFSDTEFLKRIETACRSGVTLVQLREKEVSTRRFYELAVKVKAVTD AYQIPLIINDRVDICLAVDAAGVHIGDDELPVALVRKLVGSTKIVGVSAKTVARGVEAEN EGADYLGVGAIFPTTTKDSPLTSLQTLSEIAAAVTIPVVAIGGIKEENIEQLMGTGVAGV SLVSEIMLAEQITEKVQGLMRVTERMLEARK >gi|284795487|gb|ADDQ01000062.1| GENE 5 3298 - 4116 750 272 aa, chain - ## HITS:1 COG:SP0724 KEGG:ns NR:ns ## COG: SP0724 COG2145 # Protein_GI_number: 15900621 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxyethylthiazole kinase, sugar kinase family # Organism: Streptococcus pneumoniae TIGR4 # 6 271 3 265 267 243 46.0 4e-64 MKTSVKFETIFPLTTAPLIQCITNEITCESMANALLYIDAKPIMADDPREFPQLFQQTSA LVLNLGHLSQEREQSLLAASDYARQVTKPTVVDLVGYGASDIRSEVGEKLVHNQPTVVKG NLSEMRTFCQLVSHGRGVDGSPLDQSEEAIEELIQALRQQTQKFPQTVFLATGIQDVLVS QEQVIVLQNGVPELDCFTGTGDLVGALVAALLGEGNAPMTAAVAAVSYFNLCGEKAKTKS QGLADFRQNTLNQLSLLMKEKDWFEAVKGRVL >gi|284795487|gb|ADDQ01000062.1| GENE 6 4100 - 4630 616 176 aa, chain - ## HITS:1 COG:SP0723 KEGG:ns NR:ns ## COG: SP0723 COG4732 # Protein_GI_number: 15900620 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 5 175 7 172 174 185 58.0 4e-47 MEKNRIHRVTLLALMIAMDVVLSPLMRIEGMAPMSSVMNIIAGVLLGPLYGTLMALVCGL IRMTFLGIPPLALTGAVFGAFFAGLFYQWGQKLGWSMLGEIFGTGIIGSLLSYPVMVWFT GSKQNFYWFIYTPRFIGATLIGSVIAWLVLVKLKETRVFKQTQELFLGGYFYENKR >gi|284795487|gb|ADDQ01000062.1| GENE 7 4964 - 5275 597 103 aa, chain - ## HITS:1 COG:L122849 KEGG:ns NR:ns ## COG: L122849 COG0718 # Protein_GI_number: 15672102 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 4 101 1 98 99 93 58.0 8e-20 MRGMGNMQGMMKQVQKMQKEMAKAQEALNEKEFIGEATNQLVTATFTGDRTMKDLTIKED VVDPEDVDMLQDLVIMAVNDALVKIEKETEATLGKYTKGMPGF >gi|284795487|gb|ADDQ01000062.1| GENE 8 5299 - 7059 2155 586 aa, chain - ## HITS:1 COG:lin2852 KEGG:ns NR:ns ## COG: lin2852 COG2812 # Protein_GI_number: 16801912 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Listeria innocua # 1 585 1 579 579 528 49.0 1e-149 MAYQALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAK AINCKHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEY KVYIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRIST QDIVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQV TGSLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPK LLAEKAGTLTEAFKELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLAKTV QPNKHNTPETANQGGSAEGNPELADLQNQIGQLKKELAELKKHGVTAKEADAPRQQARPQ APKSSFRVPTERVYQVLNEATRTHLMNVKNVWEDLLQTLSVTQRAMLKASEPVAASPKGI VVAFDYEIVCARATDDEEMQLAFNNNLSRLMDYTPEMVCITRESWPKLRQSFINQNQGSL NHSEPENEMARLADEPPVINEHSQENPVVDEAIAMFGEELVEVLDD >gi|284795487|gb|ADDQ01000062.1| GENE 9 7131 - 8345 1001 404 aa, chain - ## HITS:1 COG:L0027 KEGG:ns NR:ns ## COG: L0027 COG4468 # Protein_GI_number: 15673964 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose-1-phosphate uridyltransferase # Organism: Lactococcus lactis # 1 340 1 369 493 195 31.0 1e-49 MTTSQMIADFTTLAIQAGGWMELDRLYLQNRLLSMIGEQELGEVDIRPVATPAADLAEQL CQIASANQLVKTEQQKEQFMVQLMDLLTPPPSVVNAFFAQHYAKEPQEATEYFYQLCQKN GTVIEQEEPVVFSTVYGDFLANKVHSEASKATLSAQSYPRCEWCMATEGYQGSQQFPATT NHRVIRMNLDGESWGFSFVKQAQYQQQGVIAFEKHQAAKRSVKTFQQLLKIVEVFPHYFA GIDADFEQNEHVYYQTGLQQFPLAEASISEYVELANYPLINAGMVNWPVATFRLEGPNAS EVAQAANDIFEQWQMLKLPTDEIQIVARRKELLYVMDLIFSRPQAKPSLTLAEVQGLTTW SNQKTQALETVASAYQQRLKEASAFAETSEGKAAFLAMVAPVTR Prediction of potential genes in microbial genomes Time: Sun May 15 13:06:37 2011 Seq name: gi|284795486|gb|ADDQ01000063.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont149.1, whole genome shotgun sequence Length of sequence - 3299 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 3, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 76 - 1536 1007 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Term 1542 - 1597 8.8 - Term 1535 - 1579 5.1 2 2 Op 1 . - CDS 1769 - 2038 161 ## COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system 3 2 Op 2 . - CDS 2028 - 2261 319 ## EFA0065 hypothetical protein - Prom 2286 - 2345 6.5 - Term 2280 - 2328 2.8 4 3 Tu 1 . - CDS 2406 - 3299 541 ## COG1204 Superfamily II helicase Predicted protein(s) >gi|284795486|gb|ADDQ01000063.1| GENE 1 76 - 1536 1007 486 aa, chain + ## HITS:1 COG:PM1846_2 KEGG:ns NR:ns ## COG: PM1846_2 COG1263 # Protein_GI_number: 15603711 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Pasteurella multocida # 2 301 69 377 384 251 45.0 2e-66 MIQLMSAAPFMFLPILVGISAAKRFGANQFLGAAIGMIMTTPDLGGATEYWNIFGYHVAQ TNYAYQVIPVLASVYLLSILEKYFHKKLPSSIDFTFTPLLSVIITGFLTFTVIGPTMLLL SNGITDAIVWLYNATGFIGMGIFGGTYSLIVMTGLHQSFPAIETQLLSAWTNGIGHGDFI FVVASMANVAQGAATFAIWFLTKNSKTKSLASSAGLSALLGITEPALFGVNLKYRFPFFC ALIGSGIAAAITGLLKVVAVSLGSAGFLGFLSINATSIPFYLLCELISFSVTFAITYFYG RTRSSSIFAAEAIAEQTSVDTSEINTNQIANADEPTTVETIVSPLAGEITTLGSVNDPVF SSESIGKGIAIKPNGNTIYSPVDGIVQVVFETGHAYGLKSNTGAEILIHVGIDTVSLNGK GFTKKVGAKQKVKKGEVLGTFDSTVITNSGLDDTTMVIVTNSKDYSEVIPITKNIVTEGA ALLTIK >gi|284795486|gb|ADDQ01000063.1| GENE 2 1769 - 2038 161 89 aa, chain - ## HITS:1 COG:FN0497 KEGG:ns NR:ns ## COG: FN0497 COG2026 # Protein_GI_number: 19703832 # Func_class: J Translation, ribosomal structure and biogenesis; D Cell cycle control, cell division, chromosome partitioning # Function: Cytotoxic translational repressor of toxin-antitoxin stability system # Organism: Fusobacterium nucleatum # 2 89 3 90 90 103 57.0 1e-22 MKYKVVYMPQAQKQLKKMDKNQARIIVAWIRKNLEGTTDPRQHGKGLTGNRSGEWRYRIG NYRILANICDSEIIIQIFSIGHRSTIYKK >gi|284795486|gb|ADDQ01000063.1| GENE 3 2028 - 2261 319 77 aa, chain - ## HITS:1 COG:no KEGG:EFA0065 NR:ns ## KEGG: EFA0065 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 77 38 114 114 119 100.0 4e-26 MSQSTITFRIPEDEKELVLEYAKAHNSSLTELYRKAVLDKIEDEIDLKTLRNAIEISKEK KEIGISQEEMENLLNEI >gi|284795486|gb|ADDQ01000063.1| GENE 4 2406 - 3299 541 297 aa, chain - ## HITS:1 COG:AGpT100 KEGG:ns NR:ns ## COG: AGpT100 COG1204 # Protein_GI_number: 16119860 # Func_class: R General function prediction only # Function: Superfamily II helicase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 50 294 592 836 836 117 31.0 3e-26 DQDHIVKKDSSFARIERVIVDLWDMDCLDKAIVKINSYLEQNESMNQYEKGWLQQFCARM AYVFKDKVTFEEYQKQAYFNNKNLFRITNSNDEYPQLKVPSDQSKMIVKKYKEFRSPRGI LSNIDEIESLITSTSSANQFEEALKKLGDYLGFISERFDDDGIGPDVLWLINEKKGIIIE AKSRKKEHNAFRKEEHGQLLIAERWFKTKFPDIEALPVSVHQDKIATKASFAEGVKVLTF DNILLIIKETKKLYSQLIDYHLDEKALEVQCQKLLLQFDLLSERFVEKYLDTFETMT Prediction of potential genes in microbial genomes Time: Sun May 15 13:06:50 2011 Seq name: gi|284795485|gb|ADDQ01000064.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont150.1, whole genome shotgun sequence Length of sequence - 34895 bp Number of predicted genes - 29, with homology - 29 Number of transcription units - 14, operones - 7 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 119 - 192 86.8 # Pro TGG 0 0 - Term 191 - 223 4.2 1 1 Tu 1 . - CDS 238 - 1086 755 ## COG1737 Transcriptional regulators - Prom 1116 - 1175 6.8 + Prom 965 - 1024 6.5 2 2 Op 1 . + CDS 1241 - 2548 1508 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 3 2 Op 2 . + CDS 2568 - 3755 1100 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases + Term 3953 - 3994 0.4 + Prom 3962 - 4021 7.4 4 3 Op 1 3/0.000 + CDS 4059 - 4526 358 ## PROTEIN SUPPORTED gi|163764774|ref|ZP_02171828.1| ribosomal protein L14 5 3 Op 2 . + CDS 4529 - 7024 2487 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 7032 - 7091 17.3 + Prom 7033 - 7092 2.9 6 4 Op 1 . + CDS 7158 - 8192 906 ## COG1289 Predicted membrane protein 7 4 Op 2 . + CDS 8246 - 8380 84 ## gi|293384402|ref|ZP_06630283.1| hypothetical protein HMPREF9377_02258 8 4 Op 3 13/0.000 + CDS 8373 - 9293 1175 ## COG0826 Collagenase and related proteases 9 4 Op 4 . + CDS 9321 - 10568 1666 ## COG0826 Collagenase and related proteases 10 4 Op 5 1/0.333 + CDS 10592 - 12154 1527 ## COG2508 Regulator of polyketide synthase expression + Term 12160 - 12202 9.2 + Prom 12213 - 12272 11.0 11 5 Op 1 2/0.000 + CDS 12294 - 13562 1450 ## COG1457 Purine-cytosine permease and related proteins 12 5 Op 2 5/0.000 + CDS 13582 - 14676 1373 ## COG3535 Uncharacterized conserved protein 13 5 Op 3 . + CDS 14677 - 16230 1962 ## COG0145 N-methylhydantoinase A/acetone carboxylase, beta subunit + Term 16237 - 16276 5.1 - Term 16225 - 16264 0.5 14 6 Tu 1 . - CDS 16287 - 17804 1128 ## COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen - Prom 17965 - 18024 5.7 15 7 Tu 1 . + CDS 18229 - 19578 465 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 + Term 19601 - 19634 5.4 - Term 19579 - 19631 16.2 16 8 Tu 1 . - CDS 19693 - 20466 448 ## COG1396 Predicted transcriptional regulators - Prom 20554 - 20613 4.6 + Prom 20553 - 20612 4.6 17 9 Op 1 17/0.000 + CDS 20644 - 21006 397 ## COG1539 Dihydroneopterin aldolase 18 9 Op 2 2/0.000 + CDS 21007 - 21492 591 ## COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase 19 9 Op 3 . + CDS 21495 - 22055 703 ## COG0302 GTP cyclohydrolase I 20 9 Op 4 . + CDS 22059 - 22652 210 ## PROTEIN SUPPORTED gi|162456259|ref|YP_001618626.1| putative ribosomal protein 21 9 Op 5 . + CDS 22645 - 23436 915 ## COG0294 Dihydropteroate synthase and related enzymes + Term 23452 - 23506 19.0 22 10 Tu 1 . + CDS 23859 - 25937 1499 ## PEPE_0977 hypothetical protein + Term 25961 - 26006 3.1 - Term 26747 - 26790 9.9 23 11 Op 1 2/0.000 - CDS 26795 - 27781 952 ## COG0142 Geranylgeranyl pyrophosphate synthase 24 11 Op 2 3/0.000 - CDS 27819 - 28376 564 ## COG4769 Predicted membrane protein 25 11 Op 3 1/0.333 - CDS 28388 - 28810 520 ## COG5341 Uncharacterized protein conserved in bacteria - Prom 28891 - 28950 5.4 - Term 28902 - 28953 12.2 26 12 Tu 1 . - CDS 29028 - 30974 2006 ## COG1252 NADH dehydrogenase, FAD-containing subunit - Prom 31039 - 31098 6.4 + Prom 31138 - 31197 6.3 27 13 Tu 1 . + CDS 31252 - 32181 1224 ## COG4939 Major membrane immunogen, membrane-anchored lipoprotein + Term 32245 - 32299 9.4 + Prom 32335 - 32394 6.2 28 14 Op 1 1/0.333 + CDS 32436 - 33503 1121 ## COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis 29 14 Op 2 . + CDS 33517 - 34464 882 ## COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase + Term 34542 - 34592 13.1 Predicted protein(s) >gi|284795485|gb|ADDQ01000064.1| GENE 1 238 - 1086 755 282 aa, chain - ## HITS:1 COG:BS_ybbH KEGG:ns NR:ns ## COG: BS_ybbH COG1737 # Protein_GI_number: 16077237 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 10 257 13 255 283 96 28.0 5e-20 MNLIECLEQKERYTYNEGLIIDFILSHTERVLHMSIYELAEATNSSTSTIVRLCKKTETS GFKEFKIRLSRDLEIHYQAIRNVDANMPFLAQDSDLLIAKKIAQLTTETVQSTQQLLTEA MLNKSIDLLLTAENILAVGVSNSYIRLTDFQTKLLRIQLFIHLIPYQAEQFYLAINATKN DVAILVSYSGNTAEIVNEARIFAEGGTPIIAITSDLNSQLAKYATVILPIPNVEHADFKV STFSSQLAIEYILNVLYSCIFSRNFDKNYTSQKNTPTSILKF >gi|284795485|gb|ADDQ01000064.1| GENE 2 1241 - 2548 1508 435 aa, chain + ## HITS:1 COG:SPy2050 KEGG:ns NR:ns ## COG: SPy2050 COG1455 # Protein_GI_number: 15675820 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Streptococcus pyogenes M1 GAS # 10 430 7 432 434 273 34.0 5e-73 MDKLTNWVEQAVVPKVSRITSLRYFQALRNGFFAIMPLTIIGSIFMLITDFPVAGYGDFM AGIFGAGWADMISPAYRATFNMMGIIFAGTMSYKLAESYEMDRLTSLILGIVAYVVVLPK TVITESGEVVTKVLSFDWLGTQGVITAIIMSILSVELTRFCIKKKLVIKMPESVPSMVSQ AFSALIPGIFVVAVALLINGIGLSFADSFPQLIYAVIQAPLQGLIGTPFAIIIVAGLNGL FWWFGIHPTVINSMLYPILYANADKNQSLAELGQLTAQSGNFGTVQMLDQFATIGGAGCT IGLAIAMAIVGHSSRMKAMSKISFVPAFFNINEPLIFGLPVIFNPLLLIPIAVAPIVSVL IAFLSMKIGFMPMFTNIQAPWATPFLFSGFLVGKWQGAVTQVLAVAASVVIYYPFVKALD RQYQKEEAHEVPETL >gi|284795485|gb|ADDQ01000064.1| GENE 3 2568 - 3755 1100 395 aa, chain + ## HITS:1 COG:mll0856 KEGG:ns NR:ns ## COG: mll0856 COG0626 # Protein_GI_number: 13470999 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Mesorhizobium loti # 24 388 31 393 395 261 38.0 2e-69 MHVENDENICCEVEKGIEKMYHPMVPELVQTSSFYFPTYEEFMAASIDEKNNYVYTRGTN PTTEILEKKIARLERGEKCKVFASGMGAISATLFTLLQQGDHVLMVNTIYGESVSFVQYL EKFGVSLTKVDVAETEELFQFVQENTKVIYFESPSSQKFELLDLEKITALAQKIGAYTVI DNTWASPLFQHPLCHNVDLVIHSCSKYIGGHSDIVAGAVIGKAALVDQIFEHGHQALGAV NSPFNSWLALRGIRTMPVRLAHQSQAIQTVLSALQKDPRISRLYHPFVGNQQQQALAEKY LTGYGSLFAIDLKDTDFERLKTFVNALTLVTIGVSWGGFESLALPVFKGNNLAAVQKRGL SPAHIRMYVGLEEPTSIIEDIQQALDQAYGEESFL >gi|284795485|gb|ADDQ01000064.1| GENE 4 4059 - 4526 358 155 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764774|ref|ZP_02171828.1| ribosomal protein L14 [Bacillus selenitireducens MLS10] # 4 154 2 154 158 142 47 3e-33 MSNQNTSDLIEAYLKKILEESNKIEIRRAEMANLFNCVPSQINYVINTRFTIQRGYAVES KRGGGGYIRIVKVQISDNDQLLKQMDQLIGATLTEKDALTFIQTLYEEEVITKKEGNLML AALSKSTLNGLGNHEDFLRAQIMRSFLERLSYEEE >gi|284795485|gb|ADDQ01000064.1| GENE 5 4529 - 7024 2487 831 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 5 810 6 806 815 962 60 0.0 MDELFTESAKAVLAIAQEEAKYFRHQSVGSEHLLLALVLEPNGIAGKTLRQLNTDTEDIR EEIEHLSGYGTMQSPMGNNNLYLPYSPRAKQIFAYAGDEAKRLGAQKIGTEHLLLGLLRD EEILASRILVNLGLSLSKMRQLLLKKMGVSEPNSAQRRRNGQSKNAPQGTPTLDSLARDL TKLAREQSLDPVVGRGTEVRRLIQILSRRTKNNPVLVGEPGVGKTAIAEGLAQKIVNREV PEDMQGKRLMMLDMGALVAGTKYRGEFEDRLKKVVDEIYQDGQVILFIDELHTLIGAGGA EGAIDASNILKPALARGELQTIGATTLDEYQKYIEKDAALERRFARIQVAEPTPEEAEEI LKGLRSRYEKHHGVEITDEALHAAVHLSIRYLNDRQLPDKAIDLMDESAAKVRLDKADQP SEINELRTEISQLITEKEEAIQNQSFESAARIRQKEKQVMEKLEELIAVKEKSLSGYSTQ VTEEDVAGVVSQWTGVPLQQLEKKESERLMELETILHQRVVGQNEAVEAVSRAIRRARSG LKDPARPIGSFMFLGPTGVGKTELAKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSP PGYVGYEEGGQLTEKIRQRPYSVILLDEVEKAHPDVFNILLQVLDDGHLTDAKGRKVDFR NTILIMTSNLGATAIREEKHVGFNVKDISKNHELMQKRIMEELKKAFRPEFLNRIDETVV FHSLKQEEIHEIVKIMSQSVVKRMAEQEVKVKITPAAIEVIGKVGFDPEYGARPIRRALQ KEVEDRLSEALLSGQIQLGDKVTLGASKGKITLNVRAPKAPKTEAKELQTV >gi|284795485|gb|ADDQ01000064.1| GENE 6 7158 - 8192 906 344 aa, chain + ## HITS:1 COG:Cj0557c KEGG:ns NR:ns ## COG: Cj0557c COG1289 # Protein_GI_number: 15791918 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Campylobacter jejuni # 20 328 29 337 361 98 27.0 2e-20 MEQSFFRELLHYQRPKDNPFRLVFAGLVMFSILFLGYINHQLLISSFGSLGIFTFLYYQP LPLKQLMTRLSVVGSYLFLGNLLGMLSTHIAWLIPIVVALVGFGGRFFFEVYDISKPGAF FGVMVTAMGASTSIPLAKIPFMSGWMLLGIGFSILFALVLHFTEKEISAPLAKRSLRERI YRHPEAPLDSIYYSFVLFFAVYISESLHLQNPYWLVVSCASILQGDNLRAIKQRNIQRIF GTTIGLVISAFLLNLALTTFESIVVITILFVTVEYFIRRNYGLAQFFTTPMALMLSLLVR QQYVITLIQFRFLGIVLGSLLGLAAAWLFTVVVTFYERKYHLNE >gi|284795485|gb|ADDQ01000064.1| GENE 7 8246 - 8380 84 44 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293384402|ref|ZP_06630283.1| ## NR: gi|293384402|ref|ZP_06630283.1| hypothetical protein HMPREF9377_02258 [Enterococcus faecalis R712] # 1 44 1 44 44 79 100.0 5e-14 MTLFYQNFFGNIVKNVRLIQIGSFKVCERMILLNGHKEGGYIYD >gi|284795485|gb|ADDQ01000064.1| GENE 8 8373 - 9293 1175 306 aa, chain + ## HITS:1 COG:L54059 KEGG:ns NR:ns ## COG: L54059 COG0826 # Protein_GI_number: 15673973 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Lactococcus lactis # 1 306 1 307 307 358 56.0 9e-99 MIELIATAESVEQAVELLATGVDTLYIGEETFGLRLPVSFTRDEQREIVKRAHEMGKQVL VAVNGIMHPEKMKLVPEYLTFLKEINVDKITLGDPGIVFIMQRDGLEIPYVYDGETLVTS SRQINFWSKRGAIGAVLAREVPFEEMVAMEENLAVPAEILVYGATCIHQSKRPLIQNYYN YTKNDKGVTKDEGLFISEPKKPETHYSIYEDSHGTHIFANNDVNLMNELTNLYDHHYRTW KLDGLYTPGENFVAIARLFAEAKAALEAGTWSEDQAAHATAEIEKLHPTGRGLDNGFFDL SADAIK >gi|284795485|gb|ADDQ01000064.1| GENE 9 9321 - 10568 1666 415 aa, chain + ## HITS:1 COG:SP1429 KEGG:ns NR:ns ## COG: SP1429 COG0826 # Protein_GI_number: 15901282 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Streptococcus pneumoniae TIGR4 # 7 415 3 410 428 631 74.0 0 MKVMTERTLKRPEVLAPAGTLEKLKVAIRYGADAVYIGGNAYGLRSRAGNFTPEEMAEGV AFAREHNAKVYVAANMVTHEGNQEGAGAFFRELRDIGISAVIVSDPALIEICATEAPGLP IHLSTQASATNYETLEFWKNEGLERVVLAREVSMEEVAAIRENTDIEIEAFIHGAMCISY SGRCTLSNHMSMRDANRGGCSQSCRWKYELFDMPFGTERRSKTSEGEVEEEFSMSAVDMS MIEHIPELIENGVDSFKIEGRMKSIHYVSTVANVYKKAVDSYMEDPENYVCQQEWIDELW KVAQRELATGFYYNTPSENEQLFGERRKIPQYKFVGEVIAYNEKTQVATIRQRNLFSVGD EIEFYGPGFTHFHQTVKEMYNEDGEAIDRAPNPMMLLTMEVTQPVAVGDMIRKKK >gi|284795485|gb|ADDQ01000064.1| GENE 10 10592 - 12154 1527 520 aa, chain + ## HITS:1 COG:lin0472 KEGG:ns NR:ns ## COG: lin0472 COG2508 # Protein_GI_number: 16799548 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Listeria innocua # 1 517 1 524 531 323 35.0 6e-88 MSVRVNDLLKLPSLREATVLSGKNQLDTSVASLSFLEVSDMSLFSEKLHKTNEYHAGEIL IGSFCAIRHDVVKQCETIRHLHELGEVGLILYYVGIIVPKVAEEVIQLADSLGFILIQMP KNDPTLRYNEVIYEVMKLLVNKNKMASFATDLLEKVSLLPEQNRSVEMTLKILSDFLKVN IALTTYTNEIISTINWPRSTKLPLTKLLYQSQEKVALGETTYFITSQKLPQKDGQTLKLY FIREEEQLTSFEMNQAVEVVQMALNLWGKNYDEVSEYALVQAIINDESDKMYQLAKKLMI DISSVETMWLLPIWQQGQEIHAIQQDLKDFLRYYYQTTIVQQTENYLIVLLGNYLHKQPE ATISKEYLQATDYQDYLGEIILCPKVRNTTEVRVSYQTANQVAPFLKRVYPQRKVLSIAE IRTVQQMMTCLQAGEEAIQQRLAVIQPLLKESEQLMTLGTFLLDASSDFKECGERLFVHK NTVKYRISKINEALGYDMTNAAEAYEVYLAMILYRLVTNE >gi|284795485|gb|ADDQ01000064.1| GENE 11 12294 - 13562 1450 422 aa, chain + ## HITS:1 COG:lin0473 KEGG:ns NR:ns ## COG: lin0473 COG1457 # Protein_GI_number: 16799549 # Func_class: F Nucleotide transport and metabolism # Function: Purine-cytosine permease and related proteins # Organism: Listeria innocua # 2 420 4 422 427 505 68.0 1e-143 MKLKNEQQQSWLSLAFVWAGAMISVPGLIIGGTLVAGMPLWEALLTGFIGYGIIVILMIL QGIQSSDLQEPSVKVASQVFGIQGSQKIISIILAIACLGWFGLQANVSGGAFTNFLKIYG IDLPVSLSSLIWGVIMLISALYGIKILKILNYFAVPVLVLVCLYGLVASLRNNGWEAVSQ YTPQTAGSFMSGLSMTVGSFALGAVIAGDYSQYVSSRKDVVKAATLGILPTGLLMIGVGA VLTIASNTADITEVFMNLGFPVLGIIALILATWTTNAVNAFSGGLALINVFDIPKEKEKV AVGAAGAIGTLLAVVGILNYFTPIMSVLSAMVPPVAGVMIAAYWLINKGNRTKWQPTPGV NKLGVFSWLIGAAVGGIPVIMSFFPNAPQLPNQPLIGIVLSFVIYYFGAKRQQTNTESLE ME >gi|284795485|gb|ADDQ01000064.1| GENE 12 13582 - 14676 1373 364 aa, chain + ## HITS:1 COG:lin0474 KEGG:ns NR:ns ## COG: lin0474 COG3535 # Protein_GI_number: 16799550 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 364 1 363 366 565 76.0 1e-161 MRYLDAEAIENIATGAAFLGTGGGGDPYIGKMMALSAIEENGPVKLVSPEEIAAEDFFLP AAMMGAPSVAIEKFPKGDEFVRVFEKLGKYLDQETIAGTFPMEAGGVNSMIPIVVAAKLG IPLVDCDGMGRAFPELPMVTFHLNGMSATPMAITDEKGNIGIMETIDNTWTERLARVQTV EMGASALVSIYPATGKQLQDYGIHNIVTLSEEIGKVIRGTYADEQEKRQALVEVTDGFEL FQGKILDVEREVKGGFNLGRVKLSGLNSDAGSEAVVHFQNENLIAEKDGQVIAMTPDLIC MVDLETLTPVTTESLKYGKRVQVMGLKANAAWRTKKGIETVGPRYFGYEMDYQPLENLVA KEDK >gi|284795485|gb|ADDQ01000064.1| GENE 13 14677 - 16230 1962 517 aa, chain + ## HITS:1 COG:lin0475 KEGG:ns NR:ns ## COG: lin0475 COG0145 # Protein_GI_number: 16799551 # Func_class: E Amino acid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: N-methylhydantoinase A/acetone carboxylase, beta subunit # Organism: Listeria innocua # 1 516 1 515 516 729 74.0 0 MYKIGIDVGGTNTDAVILDHQLNLIHSVKVPTTDDIQTGIAGALNKVLAESAVDPTKVTH AMLGTTQCTNAIVERKKLAKVGVLRLGYPATASVLPYTAWPKDLVATLSETYALAHGGYE YDGQPLTALDEEELRGILASWRGEVEAIAVIGVFSSLKNDQELFVQALAKEVLGADVPVS CSSMIGSVGLIERENATILNAALHKVIKVTSEGFEQALEQEKIHHAQVYLCQNDGTLMSL TYAKQFPILTIACGPTNSIRGASYLAGLKDAVVLDVGGTTSDIGVLVDGFPRESSLAVDV GGVRTNFRMPDIVSIGVGGGSLVREQPDGSVTVGPDSVGYRITQEALVFGGTQLTTTDIA VRLGHAQVGDPSKVAHLDQAFAEKVYQKIGELVSEAIDRMKTSSADVTVVLVGGGSIIIP EELTGVKALIRNENGAVANAIGASIAQISGQYEQIYVYSKIQRDAALADAQEKAVQQAEL AGAVPGTIELVEVEETPLAYHPENATRLRVKVVGNMY >gi|284795485|gb|ADDQ01000064.1| GENE 14 16287 - 17804 1128 505 aa, chain - ## HITS:1 COG:MA2369 KEGG:ns NR:ns ## COG: MA2369 COG2865 # Protein_GI_number: 20091201 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen # Organism: Methanosarcina acetivorans str.C2A # 10 398 7 367 510 84 26.0 4e-16 MNQFIELKDEIFSHPKESWQLEYKKSQTSLSKDIWSTYSAFANTKGGIIILGVEEIPNSY RVVGVDKPEMILRDFWNLIHDKKKVSANLLSNEDVITLKVAGKSIIQIKVPKASFERRPI YLNGNKTNTYIRTDDGDRKADDNQFKYLIVDSQNDIDTELLNNYTLDDLNTKTIQEYREL LYKNTQEQKYLDYSDEELLINLGVLKKDRMNSDNVYKLTTGGLLFFGKYHSITDRFKKFQ LDYFKKKSSLDSDWLDRVSTGDMNYPEMNIFSFYTIVIEKFALAIPDTFRQSQDMTRGSY KSDLLLSLKEALVNVLMHAYYDSDHVIKIADYDDYIEFYNPGEMKVSKEEFIHGSYSVTR NPIISTLFRRVGIAEKAGSGGPRIIDAATKNSLKAPDIDTYFDATTIKIWKINMKDSLKG YTDIEQLIILYLMDHGQAKIKDIQKNSGYSDYKIRKTVTSLVQQGTLLNKGNGKSTIYML NSTEELGIIANKRILKRIETELTRK >gi|284795485|gb|ADDQ01000064.1| GENE 15 18229 - 19578 465 449 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 1 443 1 442 458 183 29 1e-45 MKTYDYIVIGGGSGGIASANRAGMHGANVLLIEGNEIGGTCVNVGCVPKKVMWQASSMME MMERDTAGYGFDVEIKNFSFKQLVENREKYIDFLHGAYNRGLDSNNIERIHGYATFTGEQ TIEVNGTEYTAPHILIATGGRPKKLGIPGEEYALDSNGFFALEEMPKRVVFVGAGYIAAE LAGTLHGLGAETHWAFRHERPLRSFDDMLSEKVVERYQEMGMQIHPNATPAKIEKTAQNE YVITFENGESITTDAVIFGTGRQPNTDQLGLENTKVALDEKGYVKVDKFQNTTQNGIYAV GDVIGKIDLTPVAIAAGRRLSERLFNGQTDLYLDYNLVPTVVFTHPPVATIGLTEKAALE EYGEDQVKIYRSSFTPMYFALGEYRQKCDMKLICVGKEEKIVGLHGIGIGVDEMLQGFAV AIKMGATKADFDNTVAIHPTGSEEFVTMR >gi|284795485|gb|ADDQ01000064.1| GENE 16 19693 - 20466 448 257 aa, chain - ## HITS:1 COG:L12334 KEGG:ns NR:ns ## COG: L12334 COG1396 # Protein_GI_number: 15671989 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 1 64 1 64 107 65 40.0 9e-11 MLIQTILKTRRITNHYTQEQIAQKLHVTTQAVSKWETGQSIPSIDNLLMLSDLYNVSIDE LIQGSPYFKKPQVVGKIYNLKKGILFCIVWTCFSLLLTGFGYQPFWLFSAIIFIGLLLVF PIIFSDYWIINQQDIMVHQFSRNPILKIIECIKNSSTQIKIPYSEIESIEIIYTKKIRAS AFDSSPDHFYLLVTYNNQTTKLYLDIYAKRFLPQFIAFLSRQRITIIDKSEIIELLVSDT SLYQHFNEKNVATDNRK >gi|284795485|gb|ADDQ01000064.1| GENE 17 20644 - 21006 397 120 aa, chain + ## HITS:1 COG:lin0257 KEGG:ns NR:ns ## COG: lin0257 COG1539 # Protein_GI_number: 16799334 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroneopterin aldolase # Organism: Listeria innocua # 1 119 1 118 124 85 39.0 2e-17 MDKIRINNLKFFTKNGVLAEEKRLGQQVEIDLEMQLSLAEAGRTDDVTQTVNYAEVNELI AQRVNNHSYDLIEGLASAILDDISADYQEQLNKIIIKIRKYSVPMPGLFDNIEIEMEREV >gi|284795485|gb|ADDQ01000064.1| GENE 18 21007 - 21492 591 161 aa, chain + ## HITS:1 COG:SMc00465 KEGG:ns NR:ns ## COG: SMc00465 COG0801 # Protein_GI_number: 15965562 # Func_class: H Coenzyme transport and metabolism # Function: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase # Organism: Sinorhizobium meliloti # 5 148 12 155 174 120 41.0 8e-28 MIGYVALGSNVGDPYANLVKARNYLNEDPQIQVVASSKLYETDPYGYTDQDDFLNAVLKI DTSYTAEELLAVTQGIEQVMKRKKLIHWGPRIIDIDILLLGEQSVALPHLQVPHQELTKR SFVLIPLSDVYAEEQLLGAPIATWIQRSGNQEEVRVSEKEW >gi|284795485|gb|ADDQ01000064.1| GENE 19 21495 - 22055 703 186 aa, chain + ## HITS:1 COG:BS_mtrA KEGG:ns NR:ns ## COG: BS_mtrA COG0302 # Protein_GI_number: 16079335 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase I # Organism: Bacillus subtilis # 1 174 1 174 190 203 60.0 1e-52 MEQEKQAQIEQAVTTILEAVGEDTQRAGLIDTPKRVAKMYAEVFSGLTEPEFDDYKLFDS LNEGEMVLVKDIAFYSMCEHHLLPFYGKVHVAYLPEGGKVLGLSKLPRLVEHCAKRPTVQ EDLTVTIARKLQENIPVKGIAVAIEAEHMCMTMRGVKTPQSSTKTFQFTGLFKEQEWKNQ FLMEIR >gi|284795485|gb|ADDQ01000064.1| GENE 20 22059 - 22652 210 197 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|162456259|ref|YP_001618626.1| putative ribosomal protein [Sorangium cellulosum 'So ce 56'] # 1 186 6 196 207 85 29 4e-16 MEIIVGTNNQGKLKEMQSGLKDPAIQLVSYRKYTTSQEQPAETGTTYAENAYLKARFFQQ LIGCPVLGDDGGLTLTAFPDLLGIHTSRFFHSANPEEQNRELLHLFEGQQSIRELTLSAT LVYVLDDDKLLQTEATLTGELVEPRGTGGYGFDPIIYLPDRGKTLAELSTSERMKISPRM RALRKMIQQMKEQCDND >gi|284795485|gb|ADDQ01000064.1| GENE 21 22645 - 23436 915 263 aa, chain + ## HITS:1 COG:slr2026 KEGG:ns NR:ns ## COG: slr2026 COG0294 # Protein_GI_number: 16329867 # Func_class: H Coenzyme transport and metabolism # Function: Dihydropteroate synthase and related enzymes # Organism: Synechocystis # 1 259 21 287 289 198 41.0 8e-51 MIDLKKNYQIMGIVNTTPDSFSDGGSYTTVDVAYQHALHLLEAGADILDIGGQSTRPGYE EVSPQVEAERVLPLIKKIRETSLAPISVDTYYPEVAEAAIQAGATMINDIKGLDTPGMAE VLAQYPEVQVVIMHSRKRQSLSLKEELHQFYTEKIEQCQKYGLSLEKICFDPGIGFHKTV AENLQLLKDPNAFRYQDYPLLYGVSRKRTIGALTKEPEPANRDFGSAAASLYAAQQGVEI LRVHNVQGLKQTFDVWRALSEKE >gi|284795485|gb|ADDQ01000064.1| GENE 22 23859 - 25937 1499 692 aa, chain + ## HITS:1 COG:no KEGG:PEPE_0977 NR:ns ## KEGG: PEPE_0977 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 1 691 1 680 681 613 46.0 1e-174 MKKHNYLLILLWIVGGIFLGVEKVEAVPRPLTELGYFHWANQSITPAANTFIMHYGENTS VEPIEGEVYSNYMAVSQTTNKSKALVKNVGFYEGKAVNLLVTLQRNKSNLDGGSISFTES YFLGITIKGEMLVTYDFVDNYGQPLTIKTAFNYYGLNSNKYVGYKNPGTIIDALYAENPT HILYDTWDGGDDDYWLYLKNVTAGVPWRDPRQRFEMTTKSISTVTFVVHNNDTTPSSIVY FTDFLAKPEFPPAYAMDTYFENAETAVCLNVQQTIPNIDQWTKPSQMVVNVNLNQVNQTK QYQFDKVLVTDFKGEDLTDLFTSQTDGENVQIMTKNLSDSRLYDTVLQYKVYLKWQGTQN PVDTALISNGKLDLPFSARTLLDGENLEETTATSSVNYVGKATTVFLNEQDNAIHEPVTK EGILTTPFDLSNQYPKIAGYEPIKTQQDQGMFLPEEQTIIHRYREKKLLQFKLMDEENPL LVSRFTNQREVTFSFSHDPSTNITLIAKCGTEEKELKKYVDAPESVVDKVTYTFPEHWLN REVFFYIKDENNQESEKDSRTLQKEAGPKLILPDTINFGVNEIPATETMISSITNKEIRI EDTSKLDKSRWTIKVKEEQPLKNESGELLDKRISYGEKNQRVLINADSQPILQGSGNATA NLTKQLQLTIFPSDSVGRYSGVLRWSLEDAPE >gi|284795485|gb|ADDQ01000064.1| GENE 23 26795 - 27781 952 328 aa, chain - ## HITS:1 COG:lin2790 KEGG:ns NR:ns ## COG: lin2790 COG0142 # Protein_GI_number: 16801851 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Listeria innocua # 1 327 1 325 326 333 48.0 3e-91 MNIHPMWNTYPTLSKELTTTLRLMEQAVQIDNQEIQAAVHDMIHSGGKLLRPAYQLLFSY FGEQRDPKKATALAASIELLHTATLVHDDIVDEADTRRGLPTLRSRFGNSTAVYTGDYLF VCCFKLLSDYSSSLKSIQLNSRSMEKVLTGELGQMDNRYNFEVTIDQYLKNISGKTAELF ALSCFVGAYESGTSQRFAKRCGEIGENIGLAFQIIDDILDYTQTADAIGKPVLEDVRQGV YSLPLIYALEANREVLLPLLMKKEALTNEETQEIYRLVHELGGVEKAQQLATHYTEKALK EISKLPETKAQAKEQLYEITQTILTREN >gi|284795485|gb|ADDQ01000064.1| GENE 24 27819 - 28376 564 185 aa, chain - ## HITS:1 COG:lin2789 KEGG:ns NR:ns ## COG: lin2789 COG4769 # Protein_GI_number: 16801850 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 1 169 1 169 180 207 64.0 9e-54 MSKLHKNIYIAMLVAQGVIIGLIENMIPYPFAFAPGAKLGLANLITIIAIFTMRKRDSFF LVCLRLILTTLLGGTLSTFFYSASGALLSYFGMLLVKQLGPKRVSIIGISAVGGFLHNVG QLLTTSFFAHSWAPMLYLPFLSLFGLLSGIAIGIAANYLLQHVQTLRKFQLNYEQTTKHK WSQFF >gi|284795485|gb|ADDQ01000064.1| GENE 25 28388 - 28810 520 140 aa, chain - ## HITS:1 COG:L178600 KEGG:ns NR:ns ## COG: L178600 COG5341 # Protein_GI_number: 15673322 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 6 140 10 133 135 102 45.0 2e-22 MTIKEFIKKSRLKTWDVIIIAILVLGSFLPLVVFAMQNRGQEAATYQAVLKVDNKVIKVF DLKKDGPHYTYKYEAKDGDYNLIEVDGDRIRVKEANCADLVDVRRGWISKPGETPIACLP HNLFITVEASDGSEDGSLIY >gi|284795485|gb|ADDQ01000064.1| GENE 26 29028 - 30974 2006 648 aa, chain - ## HITS:1 COG:L41335 KEGG:ns NR:ns ## COG: L41335 COG1252 # Protein_GI_number: 15672811 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase, FAD-containing subunit # Organism: Lactococcus lactis # 1 648 1 666 667 717 57.0 0 MTKQNIVVVGAGYAGVSATKFLAKKFKKDTDVTITLIDRHSYHTMMTELHEVAGGRVEPE AIQYDLQRLFSRKKNVKLVTDTVTGIDKENKVVKTLAGSYPFDQLILGMGGEPNDFGTPG VKENGFTLWSFDDAVKIRHHIEATVAKAAIEPDAEVRKAMLTFVVCGSGFTGIEMVGELI DWKDRLAKDAKIDPDEITLMVVEAMPTILNMLSRNDAAKAERYLEKKNVQLLLNSPIVEV AADHIKLKDGSEVPTHTLIWTAGVKATSDAADFGLEAARGSRLVANEYMQAKGYEDKNIY IIGDLVYYEETPNTPTPQIVQAAEQTGHTAAANIVADIKGGEKHAFKGNYQGFMVSIGAK WGVANLFDKIHLSGFLAIIMKHIVNLKYFFDIRSGYYMFQYIMHEIFHIKDDRSVARGHT SRYGNVLWSVPLRVFYGMVWLVESMKKIVGNGDYLKPSTWFGDGSWFTDKVVFPFPWLQE QVTTGASQATETATTAASGAADAAASGGADAATQAAHFGLSYAYGETPMQVFDHMPKWFE SVMKFMMPNQEVALFMQKFMTIVEVCIALALIAGLFTWLSSAATIGLTIAFCLSGMFYWV NIWFIFVAFALMNGSGRAVGLDRWVIPWIQRKLGKAWYGTPKARYGGK >gi|284795485|gb|ADDQ01000064.1| GENE 27 31252 - 32181 1224 309 aa, chain + ## HITS:1 COG:lin2786 KEGG:ns NR:ns ## COG: lin2786 COG4939 # Protein_GI_number: 16801847 # Func_class: S Function unknown # Function: Major membrane immunogen, membrane-anchored lipoprotein # Organism: Listeria innocua # 1 307 1 296 299 221 50.0 1e-57 MKVNKFVKGFAAIALFSLVLAGCGADKKDNTTNSSSAASSETKKSTESSAPAKKVAGGDL KDGTYKLEEKNEKNGYRAVFEMTVKDGKITESKYDNINADGKSKTEDTKYEESMKAKSGV GPKEYIKQLNDSFVKAQSASGVEVVTGATHSSESFQNYAQQLIQAAQAGNTDTIEIDNGA TLKDGTYSLKEKNDSNGYHTTFSMTVKDGKVTESNYDNVNADGKSKKDDTEYESKMKDVA GVGPKEYIETLNKEFVKAMGEEDGSPAGVEVVTGATHSTHSFINYAQQLVNAAEKGDTTE IVVDNIVTK >gi|284795485|gb|ADDQ01000064.1| GENE 28 32436 - 33503 1121 355 aa, chain + ## HITS:1 COG:lin2785 KEGG:ns NR:ns ## COG: lin2785 COG1477 # Protein_GI_number: 16801846 # Func_class: H Coenzyme transport and metabolism # Function: Membrane-associated lipoprotein involved in thiamine biosynthesis # Organism: Listeria innocua # 3 340 2 348 360 376 56.0 1e-104 MKKKLLLMVSVLAVLFVAAACSSKPEAKINTEPYSDRQTMLGTYVQIRIYDDGKEDVLPK AFARVKELGDKITVNQPGSEIDEINQEAGVKPVKVSDDLYPLLKKAYEYSKDSRGGFDMA IGPITSMWHIGFDDARKPSQAEIDQALKLVDYTKVKFNDKEQTVYLEEKGMQLDLGAIAK GFITDEVVKVLKDNGVTTAIVDLGGNVYVLGHSPRGKDMDWTVGIQDPNKARNTVLGQVK ESNKTLVTSGIYERYLKVDGKTYHHLFDRETGYPFDNDIAGVTIITDKSIDGDGLSTAVF SMGVKKGLEYVESLKGTDAIFVTKDDKVYISKDIEGNFEIGKDSGYTMGNRADLK >gi|284795485|gb|ADDQ01000064.1| GENE 29 33517 - 34464 882 315 aa, chain + ## HITS:1 COG:L112353 KEGG:ns NR:ns ## COG: L112353 COG1575 # Protein_GI_number: 15673645 # Func_class: H Coenzyme transport and metabolism # Function: 1,4-dihydroxy-2-naphthoate octaprenyltransferase # Organism: Lactococcus lactis # 1 313 1 313 319 307 55.0 2e-83 MSLNVFLKVVEIQTKLASLFPFIIGVLFSMTYFGEVQWGNTLVFFIGMVVFDMATTAINN YMDFKKAKSDVYKYEENIIGQSGVSPQLVRNMIFAMIAFTAVVGAYLTVQTGWLFLVLGG ICCFIGIFYTYGPIPLSRMPLGEIFSGFTMGLGIFVLTVYLNVVTNPPFYLTVDFASGAF RLDGNFWAVLAIVVASLPLVCSIANIMLANNLRDLDTDIENHRYTLVYYIGRPAGIVLFQ VLALAGYLVILFGFISGIYQWPVLITFATLPVIWKNIQTFKQELPQPKSFRHSIKNLMVF NGTYALGLFISALLG Prediction of potential genes in microbial genomes Time: Sun May 15 13:07:11 2011 Seq name: gi|284795484|gb|ADDQ01000065.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont151.1, whole genome shotgun sequence Length of sequence - 29093 bp Number of predicted genes - 32, with homology - 29 Number of transcription units - 17, operones - 8 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 20 - 811 444 ## COG3328 Transposase and inactivated derivatives 2 2 Op 1 . - CDS 916 - 1827 668 ## EF1875 hypothetical protein 3 2 Op 2 . - CDS 1846 - 2850 781 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) 4 2 Op 3 . - CDS 2847 - 4970 1093 ## EF1877 hypothetical protein 5 2 Op 4 . - CDS 4975 - 7422 1840 ## EF1878 ATP/GTP-binding protein, putative 6 2 Op 5 . - CDS 7409 - 7798 118 ## EF1879 hypothetical protein - Prom 8020 - 8079 8.6 + Prom 7774 - 7833 11.8 7 3 Tu 1 . + CDS 7862 - 8590 441 ## EF1880 hypothetical protein 8 4 Op 1 . - CDS 8597 - 9424 280 ## EF1881 hypothetical protein 9 4 Op 2 . - CDS 9498 - 10001 726 ## EF1882 hypothetical protein 10 4 Op 3 . - CDS 10014 - 10235 272 ## EF1883 hypothetical protein - Prom 10314 - 10373 4.5 + Prom 10510 - 10569 2.0 11 5 Tu 1 . + CDS 10632 - 11882 973 ## COG3547 Transposase and inactivated derivatives 12 6 Op 1 . - CDS 12014 - 12112 150 ## 13 6 Op 2 . - CDS 12145 - 13329 928 ## COG2946 Putative phage replication protein RstA - Prom 13475 - 13534 2.5 - Term 13614 - 13655 6.5 14 7 Op 1 . - CDS 13678 - 13845 266 ## 15 7 Op 2 . - CDS 13838 - 13915 77 ## - Prom 13966 - 14025 2.0 - Term 14016 - 14066 2.1 16 8 Op 1 . - CDS 14073 - 14513 547 ## EF1889 hypothetical protein - Prom 14539 - 14598 2.1 - Term 14531 - 14576 -0.6 17 8 Op 2 . - CDS 14600 - 14956 329 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 18 9 Tu 1 . - CDS 15058 - 15318 131 ## BpOF4_20219 putative COX1/OXI3 intron 2 protein - Prom 15349 - 15408 3.4 - Term 15501 - 15541 -0.2 19 10 Tu 1 . - CDS 15717 - 16430 -16 ## COG3344 Retron-type reverse transcriptase - Prom 16656 - 16715 2.9 20 11 Op 1 . - CDS 17525 - 18541 694 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 21 11 Op 2 . - CDS 18611 - 18955 459 ## EF1893 hypothetical protein 22 11 Op 3 . - CDS 18965 - 19339 518 ## EF1894 hypothetical protein 23 11 Op 4 . - CDS 19352 - 19666 491 ## EF1895 hypothetical protein - Term 19696 - 19739 5.1 24 12 Op 1 . - CDS 19779 - 23006 2700 ## COG4932 Predicted outer membrane protein - Term 23032 - 23070 4.5 25 12 Op 2 . - CDS 23086 - 23748 286 ## EF1897 hypothetical protein - Term 24044 - 24084 6.1 26 13 Op 1 33/0.000 - CDS 24119 - 24514 654 ## PROTEIN SUPPORTED gi|227519245|ref|ZP_03949294.1| 50S ribosomal protein L19 - Prom 24548 - 24607 5.3 27 13 Op 2 30/0.000 - CDS 24610 - 25350 899 ## COG0336 tRNA-(guanine-N1)-methyltransferase 28 13 Op 3 . - CDS 25340 - 25864 647 ## COG0806 RimM protein, required for 16S rRNA processing - Prom 25893 - 25952 7.7 - Term 25925 - 25965 7.5 29 14 Tu 1 . - CDS 25972 - 27333 1629 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family - Prom 27394 - 27453 5.7 + Prom 27347 - 27406 8.2 30 15 Tu 1 . + CDS 27530 - 27904 363 ## EF1902 glyoxylase family protein + Term 28049 - 28099 2.3 + Prom 28045 - 28104 8.1 31 16 Tu 1 . + CDS 28135 - 28734 731 ## COG0398 Uncharacterized conserved protein + Term 28754 - 28807 5.5 + Prom 28736 - 28795 4.2 32 17 Tu 1 . + CDS 28835 - 29093 136 ## EF1904 glycerophosphoryl diester phosphodiesterase family protein Predicted protein(s) >gi|284795484|gb|ADDQ01000065.1| GENE 1 20 - 811 444 263 aa, chain + ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 257 134 390 391 238 46.0 1e-62 MSNITKSFTEEVTAFKGRELHDRYAAIYMDATYIPLKRKTVAKEAIHIAVGIRPDGSKEV LSYAIAPTESITIWEEILLDLQERGLKNVLLFITDGLKGMVGAISRFYPKARFQHCCVHV SRNISHKVRVDDRKEVCDDFKMVYQTSSKKVALEARGAFAEKWKTSYPKVVESILSNDHL LTFYDFPLAIRKSIYSTNLIESFNKQIKKYSHRKEQFQNEESMERFLVSSFDTYNQKFLG RSHKGFQQAEGELEQMLSQLIEN >gi|284795484|gb|ADDQ01000065.1| GENE 2 916 - 1827 668 303 aa, chain - ## HITS:1 COG:no KEGG:EF1875 NR:ns ## KEGG: EF1875 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 303 1 303 303 485 99.0 1e-136 MKIKIERIQKEKMSKKKKERTISVGKHRKMVLALWLLLSCSLAFGIYKNFTAIDQHTTHV KMVVKEKVINTSGVESFTKNFVKEYFSWKNNKEVIEKRMSNLGQYLTEEGLALSQDMVRV DIPTSSEVNSVKILDVEKRSKDFVVSFLVDQKITEGKKSEQISSAYRVKIFEDEKENHIV TSLPTMISKPGKAKYEVKQVESDSDIDAKTTQEITEFLETFFKLYPTASEKELEYYSENE SMSQVSSDLRFVEITNPIYLEKDGSVQVKIVVKYLNEIEKVTNSFQYNLLLNKEENWKII NGE >gi|284795484|gb|ADDQ01000065.1| GENE 3 1846 - 2850 781 334 aa, chain - ## HITS:1 COG:BS_yddH_2 KEGG:ns NR:ns ## COG: BS_yddH_2 COG0791 # Protein_GI_number: 16077564 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Bacillus subtilis # 215 332 5 122 124 122 48.0 8e-28 MNLKELSVISLTMLMLSFMGILMCVSLLFGEDSEGSGTSGISPGGNSVSEEVLKHRSMVE KYAKESDILDYVPILLAIIQVESGGTMEDVMQSSESAGLPPNSLSTEASIKQGCIYFASL VKSSKELGCDQDSIIQAYNYGGGYLNYVAKNGKKHSFTLAESFSKEKSGGQKVDYPNPIA IKENGGWRYNYGNMFYCLLVKQYLTTTQFDDKTVQGIFDEAFKYEGTAYVFGGSSPATGF DCSGLTQWCYAKVGLKLPRVAQDQYDVMTHIDLKDAKPGDLIFFHSTYDAGTYVTHVGIY AGENRMFHAGNPVGWTNLTESYWQQHLIGAGRYN >gi|284795484|gb|ADDQ01000065.1| GENE 4 2847 - 4970 1093 707 aa, chain - ## HITS:1 COG:no KEGG:EF1877 NR:ns ## KEGG: EF1877 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 707 1 707 707 1340 100.0 0 MKKKLFRIVGIVFISILTLIVLLSLVGTVAEATGLVDDTVESGNLYSKYSLNNYQLDFFV DSSWDWLPWNWGDGLGKSVMYGLYAITNFIWTVSLYLSNATGYVVQEAYKLDFISDTAES IGKNIQTLADITENGLQTSGFYFGFLLLMILALGVYVAYTGLLKRETTKAVRAVINFVMI FLLSGSFIAYAPTYITKINDFSSDVSEAALTLGTEIVVPNSESQGKDSVDLIRDSLFSIQ VQQPWLLLQFDDSNIEEIGEDRVNKILSVSPDENKGKDREEAVKAEIEDNDNANLSITKT MNRLGIVVFLVLFNIGISFFVFLLTGIMLFSQILFIIFAMFLPISFLLSMLPTYESLGKM AIIRLFNTIMMRAGVTLVITTAFSISTMFFNISATYPFFMVAFLQIVTFAGIYFKLGDIM SMFNLQSNDSQSMGRRVMRRPQMLMNRKLRQLNRNVGRTLAFGGAAAVGNKLAKEQSKPK FKPAGSSLRKNSRLPNDREVSSDSAKENPISNNKKQSRMNLTGRKIGKVLDTQALVKDKA KQVKDQVRNTPTNLKYILHKGLEKTKKAPKEFKRGLVQEKADREKLRDKQRQRRDEKMDE KRKNLGEVTDRHGKRRSNVSIKEDPKPQKDRILKNELPKRIVMVKPNSEVRRRLVKQNLV ARENNQLLSKKNSFQQVKQRSTLPKRANQKVQRIMKARPKPKSGDKK >gi|284795484|gb|ADDQ01000065.1| GENE 5 4975 - 7422 1840 815 aa, chain - ## HITS:1 COG:no KEGG:EF1878 NR:ns ## KEGG: EF1878 # Name: not_defined # Def: ATP/GTP-binding protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 815 1 815 815 1588 100.0 0 MYPIKYVENNLVFNQEGECFAYYELVPYNYSFLSPEQKYQVHDNFRQLIAQNREGKIHAL QIATESSIRATQERSKKEITGRLKEVAKQRIDLQTDALVSMIGDSQIDYRFFIGFKLIAT DEEVNLKSLKKSFLSGLQEFVYGVNHHLMGDFVSLSNEEIRRYTKLEKLMESKLARRFKV RRVTPSDLTYLIEHIYGEKGTPFEEYEFQLPKKKLKSETLVKRYDLLHPSRCLIEENPRY LRMEHENHESYVAYLTINTIVGEMEFPSSELFYYQQQQFTFPIDTSMNVEIVTNKKALAT VRNKKKELKDLDNHAYQSDNETNSNVLDALDSVNELETTLDQSKESMYKLSYVVRVSAES VDELKRRCDEVFDFYDDTNVKLVRPFGDMMGLHEEFLPSSKRYMNDYIQYVTSDFLAGLG FGATQKLGELEGIYFGYNVDTGRNVYLKPALASQGVKGSVTNALAAAFLGSLGGGKSFSN NLLVYYAVLFGGQAVIVDPKGERGGWKENLPEIADEINILNLTSKPENQGLLDPYVIMKK KKDSESLAIDILTFLTGISSRDGEKFPVLRKAIRTVTQSDQRGLLQVINELRKENSPVAE NIADHIESFTDYDFAHLLFSDGSITQSISLDKQLNIIQVADLVLPDAETTFEEYTTMELL SVSMLIVISTFALDFIHSNREIFKIVDLDEAWSFLQVAQGKTLSNKLVRAGRAMNAGVYF VTQNSDDLLDERLKNNIGLKFAFRSTDIHEIKKTLEFFGLDQEDESNQKRLRDLENGQCL MQDLYGRVGVVQVHPVFEELFHAFDTRPPVQERME >gi|284795484|gb|ADDQ01000065.1| GENE 6 7409 - 7798 118 129 aa, chain - ## HITS:1 COG:no KEGG:EF1879 NR:ns ## KEGG: EF1879 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 129 1 129 129 235 100.0 5e-61 MKKIKSYTSIWAVEKVIYAINDFQLPFPVTFNQMAWFVLSLLFVIVFAHVPPLSMIEGAF LKYLGIPVVVTWFMSQKTFDGKKPLGFLRSFLSYHLRFKVTFAGKKVKEQKKRWDEPITL VRSVNYVPD >gi|284795484|gb|ADDQ01000065.1| GENE 7 7862 - 8590 441 242 aa, chain + ## HITS:1 COG:no KEGG:EF1880 NR:ns ## KEGG: EF1880 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 242 1 242 242 419 100.0 1e-116 MQNLITMASGTLNEVYSGTEIATLFAEYGAEFNSSVPFISTPFPNFTSKATAIQNNLQSF TEEQQFKIIKELCESVLAQNPANKDVAKILKLLLKNYGSVYSNDKIDRNIINETNTWLTA SSRAKEEFEKAIQSYDNSIYNRYTLDSIRLAFEFFMQDILKNSKSLENQPIEGELLPLLR KKGIPKEIINLVRLIIKGLISYQNENVKHSQTFTDLEVEFVIEQTSILMKLFAKIEKIEN ES >gi|284795484|gb|ADDQ01000065.1| GENE 8 8597 - 9424 280 275 aa, chain - ## HITS:1 COG:no KEGG:EF1881 NR:ns ## KEGG: EF1881 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 275 1 275 275 493 100.0 1e-138 MNIDEAKQLANYFSDGSPGYILEFNNLEWDLYTKKIVGFGIQERFGGSKGNSFKEFLVSE DISDHLKFKLIYSLNETMKQIASIRQFENPSSYKSPKMNPLVTLLIEEAYHKKDSARLLN GTKFSKEVNLEYIQQLPTRISKDIQNKDFDSVLTKSNTMIDEVLKYIIENTKGKSIDNNT VRSKDLRNQAFERLNIKIDKDMDKRIKALVGALNTLSDKILEMRNSQGDAHAQGSRRIVI NEEEAILTANSAMILCEYLFRKYEKRKRFSDAKES >gi|284795484|gb|ADDQ01000065.1| GENE 9 9498 - 10001 726 167 aa, chain - ## HITS:1 COG:no KEGG:EF1882 NR:ns ## KEGG: EF1882 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 167 1 167 167 303 100.0 1e-81 MEQMRVYIANLGRYNEGELVGAWFTPPVDFDEIKERIGLNNEYEEYAIHDYELPFEIDEY TPIEEINRLCGLAEELEGTPIGEVASEIQHAFFNSFEEMVEHLDNIVYYPDCNDMSDLAY YLIEEAGALGEVPTHLQNYIDYEAYGRDLEIEGNYLVTSRGVFELCE >gi|284795484|gb|ADDQ01000065.1| GENE 10 10014 - 10235 272 73 aa, chain - ## HITS:1 COG:no KEGG:EF1883 NR:ns ## KEGG: EF1883 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 73 1 73 73 102 100.0 6e-21 MNFGQNLYQWFLTNAQSLVLLAIVVIGLFLGFKREFSKLIGFLVIALIAVGLVFNASGVK DVLLNLFNRIVGA >gi|284795484|gb|ADDQ01000065.1| GENE 11 10632 - 11882 973 416 aa, chain + ## HITS:1 COG:FN1357 KEGG:ns NR:ns ## COG: FN1357 COG3547 # Protein_GI_number: 19704692 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 3 407 2 385 391 103 26.0 6e-22 MKLFVGLDVSSEKLDACFMTDDSTCSVLKEASYGNSQLGASQIKEYILEFSQKFEIESLV IGMEATSLYSFHPAMFFKEDLELNQLNLMVSVEQPNKIKKYRDIFEENKNDQIDAFYIAD YFRIQRQVNSIIKEEEYLALQHLTRTRYQLIKQLVRTKQHFIENIYYKCNTLSKELKAEG GSVLSATLVTLMTEDYTMDQLAELSLEEFANLIQKLGKYRFKNPEGIAKAISKAIRSSYR LGKVHQDSVDIVLGVLAKEIRSLEKLIKDLDKAIDDLVVVLPEYQCLTSIPGIGPVYAAG ILAEIGPINRFSDESKLAKYAGLYWRQNQSGNSEYENTPMAKRGNRYLRYYLVEATNSVR RYEPEYHAYYKKKYAETPKHKHKRAIVLTARKFTRLVDTLLRNHQLYMPPRSVIDK >gi|284795484|gb|ADDQ01000065.1| GENE 12 12014 - 12112 150 32 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLLAFGGSMLSVTVMCLMHASVAANQAMEKKV >gi|284795484|gb|ADDQ01000065.1| GENE 13 12145 - 13329 928 394 aa, chain - ## HITS:1 COG:BS_ydcR KEGG:ns NR:ns ## COG: BS_ydcR COG2946 # Protein_GI_number: 16077554 # Func_class: L Replication, recombination and repair # Function: Putative phage replication protein RstA # Organism: Bacillus subtilis # 66 394 27 352 352 255 42.0 9e-68 MVQRNLDYRLLKDRRNEYGISQNKLATACGLSRPYLNQIENGGVTASTKTMRKIFNQLES FNPDLPLSLLFDYVRIRFPTTDARKIIQEILHLKFDYMLHEDYAFYSYQEQYVMGDIVVM LSHEEDKGVLLELKGRGCRQFETFLLAQKRSWYDFFEDCLKAGGVMKRLDLAINDLVGLL DIPDLTKKCQKEECISLFRTFKSYRSGELLKADEKDGMGNTLYIGSLKSEVYFCLYEKDY EQYIKLGIPLDKTETKNRFEIRLKNDRAYHAIQDLLKGRSIESTTFSIINRYLRFADKVE GKRRTNWPLNEQWGRFIGRNRKEIQLTSEPKPYTIERTLNWLGRQVAPTWKMAKELDRLN QTTYIQDMVQNARLSDRHKKILEQQSMAIENLII >gi|284795484|gb|ADDQ01000065.1| GENE 14 13678 - 13845 266 55 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTEKEKVEEIMEKYNRNFSTLQKNASAKELKTVFKFVADESNRKQRELIGLDKEK >gi|284795484|gb|ADDQ01000065.1| GENE 15 13838 - 13915 77 25 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDIDNVELTLPISYTKEILEEELHD >gi|284795484|gb|ADDQ01000065.1| GENE 16 14073 - 14513 547 146 aa, chain - ## HITS:1 COG:no KEGG:EF1889 NR:ns ## KEGG: EF1889 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 146 1 146 146 273 100.0 2e-72 MTEDDSLQYAKENKKEIISSVIDGKEKEEEKTAIFMAGSPGAGKTEAAQTLTVLNSNLCV IDADKFRVLFPGYVGNNSDEFQRGSSLLVDAALDLVLKKGYSFILDATFATSKVKQNIER ALKKNYNVLVYYVYQDPFIAWDFTKK >gi|284795484|gb|ADDQ01000065.1| GENE 17 14600 - 14956 329 118 aa, chain - ## HITS:1 COG:BS_ydcQ KEGG:ns NR:ns ## COG: BS_ydcQ COG1674 # Protein_GI_number: 16077553 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Bacillus subtilis # 1 110 337 446 480 141 60.0 3e-34 MLTTKESAVILNKLKQIVMLGRQSGFFLILACQRPDAKYLGDGIRDQFNFRVALGRMSEL GYSMMFGEVDKNFFMKRIKGRGYVDTGGSVISEFYTPLVPKGYDFLESIKQVAQSKEK >gi|284795484|gb|ADDQ01000065.1| GENE 18 15058 - 15318 131 86 aa, chain - ## HITS:1 COG:no KEGG:BpOF4_20219 NR:ns ## KEGG: BpOF4_20219 # Name: not_defined # Def: putative COX1/OXI3 intron 2 protein # Organism: B.pseudofirmus # Pathway: not_defined # 1 86 213 298 304 87 52.0 1e-16 MKSGKCEITKQFLPAKAVHCHHYLPKSLGGDDKFDNLRIIHKDIHLLIHTTNKMIIDHYV NELKLLPEQIAKINLYRKMCNLQNIQ >gi|284795484|gb|ADDQ01000065.1| GENE 19 15717 - 16430 -16 237 aa, chain - ## HITS:1 COG:BH0224 KEGG:ns NR:ns ## COG: BH0224 COG3344 # Protein_GI_number: 15612787 # Func_class: L Replication, recombination and repair # Function: Retron-type reverse transcriptase # Organism: Bacillus halodurans # 22 228 131 305 418 82 31.0 5e-16 MRSAKHALGRIMYLINISKMHYAVDIDIKGFFDNVNHRLLIKQLWNIGICDKRVLAILSK SLKSPIQGEGISSKGTIQGGIISPLLSNVVLNDLDHWVSKQWHTFETKYPYTKGYNKFRA LRDTNLKQGYIVRYADDFKIMTNDYPSALKWFHAVKLYLKDRLKLDISNEKSKIVNLRKR KSEFLGFTICVKQKGKNGFVIRIFLTKRKIKLKKRLNKELKIFKRALQHKMLSYLML >gi|284795484|gb|ADDQ01000065.1| GENE 20 17525 - 18541 694 338 aa, chain - ## HITS:1 COG:BS_ydcQ KEGG:ns NR:ns ## COG: BS_ydcQ COG1674 # Protein_GI_number: 16077553 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Bacillus subtilis # 31 328 41 335 480 266 46.0 3e-71 MYKEHRIRARDQHLVYHFILGWLIALLISWMGVFYFQEFRQFDISRVSLSTIETVWSMKE LICLLGSLGFSGAMLLLYIHFFPDHWRSLWHRQKLARMILENHWYEVKQTQSEGFFKDLN SSRTRETISYFPKIYYRMKEGLLSIRVQISLGKYQEQLLKLEKKLESGLYCELVEKELKD SYVEYTLLYDMIANRIGIDEVVAENGTLRLMKNQVWAYDSLPHMLIAGGTGGGKTYFLLT IIEALLKSDAELFILDPKNADLADLGTVMPHVYSQKEEISACVEDFYERMIARSKAMKEM PNYKPGENYAYLGLPPNFLIFDEYVAYMGANRFPTSIE >gi|284795484|gb|ADDQ01000065.1| GENE 21 18611 - 18955 459 114 aa, chain - ## HITS:1 COG:no KEGG:EF1893 NR:ns ## KEGG: EF1893 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 114 4 117 117 185 100.0 4e-46 MEINVEHILDCLDQYGKGELTEEQLVKALTYDEKMFLIMHQGLLGENSDSEDDFDVQDWL EEEESFFMVVEVNENLCRQAESVLEEIGVEMPDAIEGFLNQLVEKKQFPVVINS >gi|284795484|gb|ADDQ01000065.1| GENE 22 18965 - 19339 518 124 aa, chain - ## HITS:1 COG:no KEGG:EF1894 NR:ns ## KEGG: EF1894 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 124 1 124 124 228 100.0 7e-59 MRLTEGIVVDSVLTFGKLRFSALRREVRKQNEDGTVSNEVKERTYNLKSSAQGRMIQVSI PANVPLREFAYDAEVELVNPIVDTVANYVFREGTTVNWFIKADDLVLKRQPNQGNSTNQI EGKK >gi|284795484|gb|ADDQ01000065.1| GENE 23 19352 - 19666 491 104 aa, chain - ## HITS:1 COG:no KEGG:EF1895 NR:ns ## KEGG: EF1895 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 104 1 104 104 195 100.0 4e-49 MELKFVVPDMAETFGKLSYAGEGEILTEGYGRNTTVIGRSYHLYSSKQRADDIEVVVAAE AGEKDFDQDQPLKAVNPHLVAKGYEIENRGFTDYVLYVDDLVKE >gi|284795484|gb|ADDQ01000065.1| GENE 24 19779 - 23006 2700 1075 aa, chain - ## HITS:1 COG:lin2282 KEGG:ns NR:ns ## COG: lin2282 COG4932 # Protein_GI_number: 16801346 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Listeria innocua # 272 703 1195 1564 1806 73 26.0 2e-12 MIKPIFKKWRLFAALALLGQTIVGAIDPMIVFADEIAHPQTVTVELDLAHQYVVEGTFSD GRPMSEVTVPHYAVYNGVKQDVFCIEPGVPIDNEFTPGYEKNPLPDMPEKAKLVSVLWKK AGTDVDTHIVAQKMIWQEVNGYTLHSIKRLNGSAVNIAAIEAKINQAIADYQKKPSFHNS TAKIVLGQSTTMTDTNNLNLSEFDEVVENTANIDYRVNGNQLIITPNASSKESGVLTLKK SAGTGTPVAYKKVGQQTLMAGAIDKPNTYTVKIDVETEGSLKIKKVDKESGAIVPGTVFH LDFGKTLPAKDVTTDKEGIATLDGIPHGTKVTITEKSVPAPYTIDTIPMTATIKAGETIF MTSKNTREKGQIILDKTGIETGSDLWNDNYSLAGNTFAIRKDSPTGEIVQEMTTDEKGHA ETPKEIANALELGTYYVTETKASNGFVNTFKAVKVELKYANQTVALVTSNIKGQNQEITG ETTLIKEDKDTGDKTQGRAVFEGTEYTLFTAKDGKAVKWSEAFKPELVKGTKASDETVTL ALDEKNQAAVKHLAINEYYWQETKAPEGYTLDETKYPVSIKKVDDNEKNAVITRDVTAKE QIIRFGFDFFKFAGSAAGTAETGFNDLTFKVSPLEGTNEITGAEDEAITAYNEQLGFDGY GKFENLPYGDYLLEEVEAPEGFQKITPLEIRSTFKENKEDFVKSEYVFTITEQGQKQPIK TVTVPYEKLTNKAFSVSLNRLMLYDLPEEEDSLTSLATWKDGNKKLNTLDFTELVDKLRY NLHEIKEDWYVVAQAIDVEATKAAQEKDEKAKPVVIAETTTTLANKEKTGTWKIRHKLTT EQVLDKTIVLFNYVYENKEAFEAGDEPVAKDASLNNQAQTVNCTVERHVSIQTKAHLEDG SQTFTHGDVVDMFDDVSITHDVLDGSKEAFETILYALLPDGTNKEIWKSGKIDYEVNDKE FTKTMLAEKVDTGKFPESTKFTFAEINYDKDENINGKHNEDLKEKNQTLTPKKVPTTPRT PKQPETPTVPSGYQESSPTVKTFPQTGEKNSNVLLFIGFTLIFATAGYYFWNRRN >gi|284795484|gb|ADDQ01000065.1| GENE 25 23086 - 23748 286 220 aa, chain - ## HITS:1 COG:no KEGG:EF1897 NR:ns ## KEGG: EF1897 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 220 1 220 220 377 100.0 1e-103 MKQDDGRIVWKNLSDLKLILLINQFIEKHEIKSSRQYHRKLLENPNSAPSMWFINQKYGS WKNLLVSLGCDNGEYGKWAKISEKDLLKIVESFITVEKITSQRMYEKRSVGKDVPSLSTL KKRFGDIRYLFRKNTEKSSFTDFELMIELRNEIVRLKLQDDLSMTKFRKLVQSPKLPSVD TIMKRTNKNWEELMTEIGFDYRKIKINKQRNNLSKKKKTK >gi|284795484|gb|ADDQ01000065.1| GENE 26 24119 - 24514 654 131 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227519245|ref|ZP_03949294.1| 50S ribosomal protein L19 [Enterococcus faecalis TX0104] # 1 131 1 131 131 256 99 1e-67 MAEVTIRIFGNKEKDKMNPLIQELTQEQLRTDIPAFRPGDTVRVHAKVVEGTRERIQLFE GVVIKRRGAGISETYTVRKVSNGVGVERTFPLHTPRVAQIEVVRYGKVRRAKLYYLRALH GKAARIKEIRR >gi|284795484|gb|ADDQ01000065.1| GENE 27 24610 - 25350 899 246 aa, chain - ## HITS:1 COG:lin1906 KEGG:ns NR:ns ## COG: lin1906 COG0336 # Protein_GI_number: 16800972 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-(guanine-N1)-methyltransferase # Organism: Listeria innocua # 1 239 1 240 245 310 61.0 1e-84 MRIDVLTLFPRMFEGPMGESIIGKAREKQLLELNVSNFRDFSDNKHQTVDDYPYGGGAGM LLKVQPIYDNLKAIEEETNQQPKRVILLDPAGKPFNQKMAEEFSQEEHLVFICGHYEGYD ERIRTMVTDEVSLGDYVLTGGELGAMVMIDATVRLLPDVLGNNLSAQTDSHSTGLLEHPQ YTRPAIFNDMEVPAVLTNGNHKLIAEWQLKESLRRTFLRRPDMLESVEMTPEMLKLLEEI KQEEQK >gi|284795484|gb|ADDQ01000065.1| GENE 28 25340 - 25864 647 174 aa, chain - ## HITS:1 COG:BH2480 KEGG:ns NR:ns ## COG: BH2480 COG0806 # Protein_GI_number: 15615043 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RimM protein, required for 16S rRNA processing # Organism: Bacillus halodurans # 1 171 1 173 173 189 55.0 3e-48 MTDYLNVGKIVNTQGIKGEVRVISKTDFPEERYQKGAMLLLFQEKKAPIELVVKSHRKHK NFDILSFEGHPNINDVEKYRDGILKVAKDNLAELAEDEFYYHQIIGATVYDETGSELGKI KEILSPGANDVWVVQRPKKKDLLLPYIEGVVTKVDVENQRIDVDIPEGLIDDEN >gi|284795484|gb|ADDQ01000065.1| GENE 29 25972 - 27333 1629 453 aa, chain - ## HITS:1 COG:SA0956 KEGG:ns NR:ns ## COG: SA0956 COG1914 # Protein_GI_number: 15926690 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Staphylococcus aureus N315 # 17 451 13 448 450 480 58.0 1e-135 MKEKKTEKMLNYANGPSLEEINNTVEVPKNASFWRTLLAYSGPGALVAVGYMDPGNWITS IAGGAEYKYTLLSVILLSSLVAMLLQSMAARLGIVTGMDLAQATREHTSKRTGVALWVVT ELAIMATDIAEVIGGAVALQLLFGFPLLIGVLITTFDVLLLLLLTKLGFRKIEAIVSCLI AVIFFVFAYEVALADPNVGEVLRGFIPDTKIATDKSMLFLALGIVGATVMPHNLYLHSSI AQARKFDRNDDVEKAKAIRFTTWDSNIQLTVAFVVNCLLLILGGALFYGTNSELGKFVDL FDALKNPDIVGNIASPVLSILFAIALLASGQNSTITGTLSGQIVMEGFIHLKMPLWARRV LTRLLAIVPVIICVIIYGGSETAVEDLLLYTQVFLSIALPVSIIPLTMYTSDKKLMGQFA NPAWVKFLAWIIAIALTLLNLFLIYGTLTGLTN >gi|284795484|gb|ADDQ01000065.1| GENE 30 27530 - 27904 363 124 aa, chain + ## HITS:1 COG:no KEGG:EF1902 NR:ns ## KEGG: EF1902 # Name: not_defined # Def: glyoxylase family protein # Organism: E.faecalis # Pathway: not_defined # 1 124 1 124 124 248 100.0 5e-65 MKLDMVGIIVNDMTQALSFYQTLGFNVLEEASPDYTELQNNGVRISLNSLQMITGVYGFA PSQQGDKIELAFLCETAAEVDNTVKKMSQAGYIVFKEPWNAPWGQRYAIIKDVDANLISL FAPL >gi|284795484|gb|ADDQ01000065.1| GENE 31 28135 - 28734 731 199 aa, chain + ## HITS:1 COG:L114884 KEGG:ns NR:ns ## COG: L114884 COG0398 # Protein_GI_number: 15672877 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 7 197 10 201 201 178 53.0 7e-45 MSVTLSRKIVNIISILGIVATIIATIYFIRLGVFKDINALRGLVGQSVILGPIIFMLIQI IQVVIPIIPGGVSCAAGVLIFGPTMGFVYNYVGIALGSIIIFLLGRNYGKPFIMSLVSDK TYNKYIGWLDNEKRFERLFALAIFFPIAPDDALCLMAGLTKMSVKKFTLIILLAKPASIY LYSLALIYGGTFLTSLLGM >gi|284795484|gb|ADDQ01000065.1| GENE 32 28835 - 29093 136 86 aa, chain + ## HITS:1 COG:no KEGG:EF1904 NR:ns ## KEGG: EF1904 # Name: not_defined # Def: glycerophosphoryl diester phosphodiesterase family protein # Organism: E.faecalis # Pathway: Glycerophospholipid metabolism [PATH:efa00564] # 1 72 1 72 600 136 100.0 2e-31 MFSYFKNSIVNTLDFLKGTTAYFRDVLLMHGFMLFVLLPLLTSLSKLVLKEGGIDYISYD NLGAIATQHPYVLLTFLLIGLLILLA Prediction of potential genes in microbial genomes Time: Sun May 15 13:08:15 2011 Seq name: gi|284795483|gb|ADDQ01000066.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont152.1, whole genome shotgun sequence Length of sequence - 2280 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 26 - 1639 1639 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 1719 - 1778 8.1 - Term 1677 - 1723 2.1 2 2 Tu 1 . - CDS 1798 - 2280 384 ## EF_B0001 replication-associated protein RepA Predicted protein(s) >gi|284795483|gb|ADDQ01000066.1| GENE 1 26 - 1639 1639 537 aa, chain - ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 1 536 1 541 549 345 37.0 2e-94 MKKYKKFCFLGIGLLPLVLASCGTNTATKDSQDATEKKVEQVATLTAGTPVQSLDPATAV DQTSITLLANVMEGLYRLDEKNQPQPAIAAGQPKVSNNGKTYTIVIRDGAKWSDGTQIIA SDFVTAWQRVVDPKTASPNVELFSAIKNAKEIASGKQSKDTLAVKSSGEKTLEIELVEPT PYFTDLLSLTAYYPVQQKAIKEYGKDYGTSKKAIVTNGAFNLTNLEGVGTSDKWTISKNK EYWDQKDVSMDKINFQVVKEINTGINLYNDGQLDDAPLAGEYAKQYKKDKEYSTTLMANT MFLEMNQTGENKLLQNKNARKAISYAIDRESLVEKLLDNGSVASVGVVPKEMAFNPVNKK DFANEKLVEFNKKQAEEYWDKAKKEIDLSQNTSLDLLVSDGEFEQKAGEFLQGQLQDSLE GLKVTVTPIPANVFMERLTKKDFTLSLSGWQADYADPISFLANFETNSPMNHGGYSNKNF DELLKDSSSKRWQELKKAEKLLINDMGVVPIFQVGTAKLEKSKIKNVLMHSIGAKYG >gi|284795483|gb|ADDQ01000066.1| GENE 2 1798 - 2280 384 160 aa, chain - ## HITS:1 COG:no KEGG:EF_B0001 NR:ns ## KEGG: EF_B0001 # Name: repA-2 # Def: replication-associated protein RepA # Organism: E.faecalis # Pathway: not_defined # 12 159 187 334 336 227 89.0 1e-58 DENPVIAKIADNLFYTSYLDTLDTLDTKKEALQQQLLLDQFSEVQENTFLSKDSLKFIAA FSDTIQEAHEMVGTIIRAKTKVEKEYNVVLIGEDYQDEIDKCLRRVMHKIKTDSTVKSPK GLFYKSFYNLFVECALEKENIKNRDNSKGSEITLHNWLEK Prediction of potential genes in microbial genomes Time: Sun May 15 13:08:19 2011 Seq name: gi|284795482|gb|ADDQ01000067.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont154.1, whole genome shotgun sequence Length of sequence - 3325 bp Number of predicted genes - 6, with homology - 5 Number of transcription units - 2, operones - 1 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 670 - 729 2.6 1 1 Op 1 . + CDS 752 - 1018 230 ## EF0507 hypothetical protein 2 1 Op 2 . + CDS 1051 - 1551 433 ## EF0508 hypothetical protein 3 1 Op 3 . + CDS 1564 - 1812 344 ## EF0509 hypothetical protein 4 1 Op 4 . + CDS 1888 - 2304 442 ## COG0629 Single-stranded DNA-binding protein 5 1 Op 5 . + CDS 2328 - 2912 479 ## COG1525 Micrococcal nuclease (thermonuclease) homologs + Prom 3180 - 3239 10.0 6 2 Tu 1 . + CDS 3260 - 3323 64 ## Predicted protein(s) >gi|284795482|gb|ADDQ01000067.1| GENE 1 752 - 1018 230 88 aa, chain + ## HITS:1 COG:no KEGG:EF0507 NR:ns ## KEGG: EF0507 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 88 1 88 88 147 96.0 1e-34 MLTTKEKNRFKKMVEGNKTFHYSYVDRLRQDVRYYVNQCESAVKARESMEILEFIYSLFS DKELPAWYTKADLENDKNSIEKLERWAA >gi|284795482|gb|ADDQ01000067.1| GENE 2 1051 - 1551 433 166 aa, chain + ## HITS:1 COG:no KEGG:EF0508 NR:ns ## KEGG: EF0508 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 166 1 166 166 267 100.0 1e-70 MKFIKDVTTLEELKRVYKKLALKYHPDMGGTDKEMAQINNEYEALFDKLKNTHKNKEGEY YQKETTETPQEWQEIIHKLLTLKMENVSIEVIGAFLWVSGNTKPYKEELKALNMKWSNNK KSWYLAPDGYKKRSKKKYNMSDIRNMYGSQVVKEEQAKQKTLTATA >gi|284795482|gb|ADDQ01000067.1| GENE 3 1564 - 1812 344 82 aa, chain + ## HITS:1 COG:no KEGG:EF0509 NR:ns ## KEGG: EF0509 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 82 1 82 82 140 96.0 2e-32 MEQRRPVIHTLKIETEFFKAVKERRKTFEIRKNDRNFQVGDILILEEYMNGMYLDDECEA EVIYITDYAQREGYVVLGIELH >gi|284795482|gb|ADDQ01000067.1| GENE 4 1888 - 2304 442 138 aa, chain + ## HITS:1 COG:L0301 KEGG:ns NR:ns ## COG: L0301 COG0629 # Protein_GI_number: 15673403 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Lactococcus lactis # 7 134 8 140 141 105 45.0 2e-23 MIKTSAVGRLTKSSELRVTSTGKAVANFALACKRERLDKDGNAQTTFIQCVIWGKPAEVL AKYTQKGSLIAVNGELQSRSYDDQQGQTHYVTELVVAGFEFLESKETVQNREQKQQMPEM ANAEPFYGMDDMEPPAYH >gi|284795482|gb|ADDQ01000067.1| GENE 5 2328 - 2912 479 194 aa, chain + ## HITS:1 COG:BS_yncB KEGG:ns NR:ns ## COG: BS_yncB COG1525 # Protein_GI_number: 16078825 # Func_class: L Replication, recombination and repair # Function: Micrococcal nuclease (thermonuclease) homologs # Organism: Bacillus subtilis # 57 192 72 206 211 154 54.0 1e-37 MKKLIGKKWLLLTAVSTFLLSGCVSLEQKAQDSVKEVTGNFTQTISNDQRIPADFVRHVD GDTTVLRIDGKERKVRFLLIDTPETVKPNTKVQPFGLEASNRTKELLSTATEITFEYDKG DKTDRYGRALGYIFVDGTLLQKTLVSEGLARVAYVKEPNTKYLEELEKAQEQAKSQLIEI WSIPGYVTERGFQP >gi|284795482|gb|ADDQ01000067.1| GENE 6 3260 - 3323 64 21 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MATTKKKPIHVNVDENLKEEA Prediction of potential genes in microbial genomes Time: Sun May 15 13:08:29 2011 Seq name: gi|284795481|gb|ADDQ01000068.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont159.1, whole genome shotgun sequence Length of sequence - 2688 bp Number of predicted genes - 4, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 779 - 1390 578 ## gi|256963329|ref|ZP_05567500.1| conserved hypothetical protein + Term 1518 - 1584 9.2 + Prom 1491 - 1550 4.3 2 2 Op 1 . + CDS 1694 - 2128 185 ## EF_B0042 hypothetical protein 3 2 Op 2 . + CDS 2220 - 2552 273 ## gi|227519173|ref|ZP_03949222.1| conserved hypothetical protein 4 2 Op 3 . + CDS 2601 - 2688 145 ## Predicted protein(s) >gi|284795481|gb|ADDQ01000068.1| GENE 1 779 - 1390 578 203 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256963329|ref|ZP_05567500.1| ## NR: gi|256963329|ref|ZP_05567500.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] # 1 203 1 203 242 325 98.0 1e-87 MTRLEQAQGKLQRLKRESEEMHHLIRAEHDRIPFGQPNIIGRGDIYKKVNGYHDRAIKLL KEQEKQEKRVEMLEKVEDFKEKNELIKDVHVVGKSSYATVGAKTSVNNIDYFKNELKELE KANEKAKAYNKTKPAIKARTYGAAITKLKNKIATLEQMKEADENKVMSEKTKELIESGAV TQWKKKPIFYFVKGLRKVALEID >gi|284795481|gb|ADDQ01000068.1| GENE 2 1694 - 2128 185 144 aa, chain + ## HITS:1 COG:no KEGG:EF_B0042 NR:ns ## KEGG: EF_B0042 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 12 142 33 163 164 77 33.0 2e-13 MRRLSNTTMANETLKKEAWYRMMLTDLSSSVIDEFMETGKCHYTSNYFQGENILVTEEIE SIIKTAEKRYGFLVYYVTENKTADGQRFLSLFYVARETNDWLYCHRDLESYRQYVYVVNT TNPAFSEFGMIQFDPILGSLLRTA >gi|284795481|gb|ADDQ01000068.1| GENE 3 2220 - 2552 273 110 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227519173|ref|ZP_03949222.1| ## NR: gi|227519173|ref|ZP_03949222.1| conserved hypothetical protein [Enterococcus faecalis TX0104] # 1 110 3 112 112 186 100.0 4e-46 MEIRELTIIEDPCFYQYTTIKELESFNTSELTIALSVVRKEQRRLKEKVYHSGSGDQVDK NNVKLINKYRANLEKLLFIKQGYIPDAITQNMIDTLIKNNKKSIQKIQKG >gi|284795481|gb|ADDQ01000068.1| GENE 4 2601 - 2688 145 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTEKIDLKKLYHESKKERTEKQTKMERAL Prediction of potential genes in microbial genomes Time: Sun May 15 13:08:51 2011 Seq name: gi|284795480|gb|ADDQ01000069.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont161.1, whole genome shotgun sequence Length of sequence - 3781 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 71 - 130 11.1 1 1 Op 1 2/0.000 + CDS 302 - 841 609 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases + Prom 971 - 1030 6.4 2 1 Op 2 . + CDS 1057 - 2274 1070 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase 3 1 Op 3 . + CDS 2324 - 3580 1345 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases Predicted protein(s) >gi|284795480|gb|ADDQ01000069.1| GENE 1 302 - 841 609 179 aa, chain + ## HITS:1 COG:SA1814 KEGG:ns NR:ns ## COG: SA1814 COG0624 # Protein_GI_number: 15927582 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Staphylococcus aureus N315 # 23 179 278 405 407 68 28.0 5e-12 MDQQTYINMLQDVIQIKSENGNNVRTIPEYDNAIVMATVEAVLDELNQTKGVDLEAVITA NQPPVEAAPDSQLVLTILQVANSHDSLKPQFLIQQMNDVLGKNVLSEDMASSNLDSVKPM VVSGTTDAAQFVRANAHLEVAVYGPGMPTLNHKIDERLPLSQYLDFIEVYQEVIHQYLQ >gi|284795480|gb|ADDQ01000069.1| GENE 2 1057 - 2274 1070 405 aa, chain + ## HITS:1 COG:Cgl2031 KEGG:ns NR:ns ## COG: Cgl2031 COG1473 # Protein_GI_number: 19553281 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Corynebacterium glutamicum # 16 404 17 419 421 299 43.0 5e-81 MSIQNILSSIETIKDWQEETYKYLHSHPELSMQETHTAQFIYDTLVSYGYETQKIGGGIV GVLKNGEGKKVLFRADIDALPVKEETGLPYASTVTMKDLDGNLVPVMHACGHDVHIVAGL GAAWAMAQHQTEWTGTYIALFQPGEEIAAGAKSMIEDGLFSKIPKPDLALAQHVLTEPCS GHVGVKEEAFLSSAASVKVTVYGKGAHGSMPHLSIDPVVIASSIVLKLQTIVSREIDPFQ FSVVSVGSFQSGLKANIIPDTATLLLNIRTYDEGIQEHIINAIKRIVTAECMAGGCEKDP EVEVYDTYPLTDNDPQISQKVKQAFMTNLGEDRVATHYHAMTASEDFSYIPRALGIPYLY WGFGGFVEGQEVYANHNPKFAPAIHPTLETGTQAALIAVLTYLGK >gi|284795480|gb|ADDQ01000069.1| GENE 3 2324 - 3580 1345 418 aa, chain + ## HITS:1 COG:STM3334 KEGG:ns NR:ns ## COG: STM3334 COG0402 # Protein_GI_number: 16766629 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Salmonella typhimurium LT2 # 13 401 16 401 426 347 44.0 3e-95 MKQKYINANIYRHDKATEFIVENGRFSAIGTDLGHADEIIDVKGKLILPPYVDPHLHLDY YFTGQTDKAENKTGTLFEAIDIWNDFKKGTTKEEMKARMRQAIKDVMSYGTQYIRAQTDC TDPNLTGIKAALELREELKDKVTIQVVAFPQNGMYSYEAEGKTGRDLVEEALQLGADCVG GIPHNEWARSIGEDSIKEIVRLALKYDKYIDVHCDETDDTQARFLELLNAEVLKQSYGAR TTASHTCSFGSVNDAYAFRMMGLFKKSGIHFISCPTENAFLQGRQDSYPKRRGLTRVLEF VDQKINVAFAQDSIVDLWYPAGNGNMMNILDNGIHLAQLMRKDDFDKNFDLVTYNGAKLM GLEKEYGLEIGKPANFIVLDAPSVFEAQRNRVECLASIRNGLYLFKKAERSHEIGLDI Prediction of potential genes in microbial genomes Time: Sun May 15 13:08:51 2011 Seq name: gi|284795479|gb|ADDQ01000070.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont162.1, whole genome shotgun sequence Length of sequence - 699 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 698 331 ## EF_B0033 hypothetical protein Predicted protein(s) >gi|284795479|gb|ADDQ01000070.1| GENE 1 2 - 698 331 232 aa, chain - ## HITS:1 COG:no KEGG:EF_B0033 NR:ns ## KEGG: EF_B0033 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 232 36 267 447 400 91.0 1e-110 TILASSRKNCPIIKKRLTKASRLSYPTKFYSFGIILISKKRIEIQTYSYWHTIKDGKETL IYEQSNFERFSNDTHLKAHYNYGDWYEGLLSNYGFMSSAYTNTVFYPNNWQEKLTTVSEL KYLQLPEIERHELAHIYKYRNEIEFLQKIGATTLANEIIFDDYRNVFGLYFHKADMRVIT KKWLKANKQKLKTRNPTFHEFMLEKTLKERNAPMINEIEKYVHYSQIKQLPK Prediction of potential genes in microbial genomes Time: Sun May 15 13:08:56 2011 Seq name: gi|284795478|gb|ADDQ01000071.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont167.1, whole genome shotgun sequence Length of sequence - 2745 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 3, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 1124 1040 ## LMOf2365_0494 hypothetical protein + Term 1131 - 1176 8.2 + Prom 1144 - 1203 7.9 2 2 Tu 1 . + CDS 1325 - 1651 393 ## gi|227518268|ref|ZP_03948317.1| hypothetical protein HMPREF0348_1251 + Term 1700 - 1774 -0.1 - Term 2386 - 2428 -0.3 3 3 Tu 1 . - CDS 2530 - 2745 167 ## COG3041 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|284795478|gb|ADDQ01000071.1| GENE 1 3 - 1124 1040 373 aa, chain + ## HITS:1 COG:no KEGG:LMOf2365_0494 NR:ns ## KEGG: LMOf2365_0494 # Name: not_defined # Def: hypothetical protein # Organism: L.monocytogenes_F2365 # Pathway: not_defined # 1 81 307 386 704 81 58.0 5e-14 SGLTSLDVSRFNTSEVKSMDGMFSDCTGLKSLDLSSFNTGKVTKMTYMFAYCNSLTYLDL SNFDMSQVSQMDVMFLADEELPLLVKTNDSKLLSYDYSADLRYPGGPKFEANGGSFSPDS KEETKYYFEKCAVPVDSPKFALATFNEFRNNLKPTKEGNVFSRWKVTSGSEPVNDEQLLS PVTYMAQWRTGETGGVNIPSQDVDNTKPGEISSYGIAYMPKQFQTNRTVLNDAGPQSIPV NKTERFDVGVQDLRNTTSQWTLKAQLMWDGGKELPGSSIKTTNKTGVVMKNINNGTDPFN PDMDLTDSNNEVQGESDVTITNVPTLIMTANNVSHNAVYNYNLGDVSLEIPETRMIQPGS YEGHVEWNLANTL >gi|284795478|gb|ADDQ01000071.1| GENE 2 1325 - 1651 393 108 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227518268|ref|ZP_03948317.1| ## NR: gi|227518268|ref|ZP_03948317.1| hypothetical protein HMPREF0348_1251 [Enterococcus faecalis TX0104] # 1 108 1 108 108 162 100.0 9e-39 MINAQKIQDEKIMQDKKKIKEKRTELLYLMALDDEWYRDETSELYNKIMICSEELRKLTS DKRKIRRMSQEEYMRLRKLGFTLNEIADYYGVSASYLNSWRQKKEITF >gi|284795478|gb|ADDQ01000071.1| GENE 3 2530 - 2745 167 71 aa, chain - ## HITS:1 COG:SP0276 KEGG:ns NR:ns ## COG: SP0276 COG3041 # Protein_GI_number: 15900210 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 70 21 92 92 69 48.0 1e-12 GKNLEKLKEVIVLLQEQQTLPLKYKDHELTGNYIGTRECHIEPDWLLIYKIDGDKLILTL ARIGSHSELFR Prediction of potential genes in microbial genomes Time: Sun May 15 13:09:09 2011 Seq name: gi|284795477|gb|ADDQ01000072.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont168.1, whole genome shotgun sequence Length of sequence - 8991 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 1, operones - 1 average op.length - 9.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 19 - 78 9.7 1 1 Op 1 . + CDS 104 - 961 775 ## EF_B0012 surface protein PrgC 2 1 Op 2 . + CDS 1012 - 1902 801 ## EF_B0013 hypothetical protein 3 1 Op 3 . + CDS 1922 - 2356 524 ## EF_B0014 hypothetical protein 4 1 Op 4 . + CDS 2403 - 2630 366 ## EF_B0015 hypothetical protein 5 1 Op 5 . + CDS 2644 - 2940 328 ## EF_B0016 hypothetical protein 6 1 Op 6 . + CDS 2955 - 3755 872 ## EF_B0017 hypothetical protein 7 1 Op 7 . + CDS 3757 - 4110 385 ## EF_B0018 hypothetical protein 8 1 Op 8 . + CDS 4064 - 6454 2058 ## COG3451 Type IV secretory pathway, VirB4 components 9 1 Op 9 . + CDS 6466 - 8979 2290 ## COG3942 Surface antigen Predicted protein(s) >gi|284795477|gb|ADDQ01000072.1| GENE 1 104 - 961 775 285 aa, chain + ## HITS:1 COG:no KEGG:EF_B0012 NR:ns ## KEGG: EF_B0012 # Name: prgC # Def: surface protein PrgC # Organism: E.faecalis # Pathway: not_defined # 1 274 1 274 285 299 99.0 8e-80 MKKIILSSLFSAVLVFGGGSITAFADDLGPTDPATPPITEPTDSSEPTNPTEPVDPAEPP VIPTDPTEPSKPTEPTTPSEPEKPTEPTTPIDPGTPVEPTEPSEPTEPSQPTEPTTPSEP EKPVTPEPPKEPTQPVIPEKPAEPETPKTPEQPTKPIDVVVTPSGEIDKTNQSAGTQPSI PIETSNLAEVTHVPSETTPITTEAGEEIVAVDKGVPLTKTPEGLKPISSSYKVLPSGNVE VKASDGKMKVLPHTGEKFTLLFSVLGSFFVLISGFFFFKKNKKKA >gi|284795477|gb|ADDQ01000072.1| GENE 2 1012 - 1902 801 296 aa, chain + ## HITS:1 COG:no KEGG:EF_B0013 NR:ns ## KEGG: EF_B0013 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 296 4 299 299 479 98.0 1e-134 MFILFTTKQSHVLLNELGFNRKIDLVQGIEQLTKINADLKKSTDRILITYEIYYNVTDEK AFVRETMTLPVVEETVLQNMVQTVETNEEVKQEDLEAFLHLFKRNVSNKSKRIGRSTGSL KKKAEKQQKSTVFTTISRYSYFSVALLIFLAVGVFTGASFGSQSKPTSQNDSKLEERLTH LQEQVHEQPQVDVVARFFLSSLYSGEESDKATQKQVKKYVSEGVLKEIKGSKEQIRTLFL WESKKEGNQWLLTYVVTLKVAKEETEIRQMKVAMEKKNNNYQVTELPEEKEFTINE >gi|284795477|gb|ADDQ01000072.1| GENE 3 1922 - 2356 524 144 aa, chain + ## HITS:1 COG:no KEGG:EF_B0014 NR:ns ## KEGG: EF_B0014 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 144 1 144 144 225 99.0 4e-58 MKYERPLKRESQIKEFELGTHAAVIEKVQKKRSQKGNDMFLLSLLGKSNEKGVYFLTFGN DYTEDNLRYILASIQDNGVEIPDVDFGYNRETFEFLKGKDVYIQVEEQEYKGKVKHAVIN FLTQDEFEESEEMEFSESNTEEDW >gi|284795477|gb|ADDQ01000072.1| GENE 4 2403 - 2630 366 75 aa, chain + ## HITS:1 COG:no KEGG:EF_B0015 NR:ns ## KEGG: EF_B0015 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 75 1 75 75 86 100.0 3e-16 MDIVTKIITLIGGIIGLVSAVSIMFGVKEIRSGMSNDDPRTLDKGIEKVVVGGAVILAIG GVVAYVITQVGAIRF >gi|284795477|gb|ADDQ01000072.1| GENE 5 2644 - 2940 328 98 aa, chain + ## HITS:1 COG:no KEGG:EF_B0016 NR:ns ## KEGG: EF_B0016 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 98 1 98 98 167 96.0 1e-40 MKLLVEMIVNGQTEWEVVEEENAPQAINQSRVGFSFDENGELIVNDDEISYTGVFEVCET NLLDFTVKEAEIHRFYHKKLEKLGINPLTFENSQEIAN >gi|284795477|gb|ADDQ01000072.1| GENE 6 2955 - 3755 872 266 aa, chain + ## HITS:1 COG:no KEGG:EF_B0017 NR:ns ## KEGG: EF_B0017 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 266 1 266 266 383 88.0 1e-105 MNIPKGTTDQLFKSLAEYNPATNEAMSKIAKVLVPLGIAILGILFMIELSNTQKKFQSED GGLTIELLTNIALKYVIAYVCIMGSGYIIDGIVWFTIQAAKWINSIVTATGTSEAIPQVG KVSWWAKPIVGLFEVFAYLALWLSSVITKILIFLRGVQLYMIKALAPLFVAFFVHDELRS IAMGYMKQIMAYALQGALLVLLMGLIPILTANDYLSFASFDGGIWVNASAFVLNIMTYCA LILKYVAVIILLVGSQGFAKRLVGAM >gi|284795477|gb|ADDQ01000072.1| GENE 7 3757 - 4110 385 117 aa, chain + ## HITS:1 COG:no KEGG:EF_B0018 NR:ns ## KEGG: EF_B0018 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 117 1 117 117 199 98.0 4e-50 MAISSEFYKDLSKVEKKIWGITVREFKAYVCFVFIGILLLLEVFFLPDLLFMVCALVTSF ALGWYPVLLMMNKWKEVKRAFYLRFYYEERTFQAGKIRRYQKDEFVQKETIKETDVI >gi|284795477|gb|ADDQ01000072.1| GENE 8 4064 - 6454 2058 796 aa, chain + ## HITS:1 COG:CAC2047 KEGG:ns NR:ns ## COG: CAC2047 COG3451 # Protein_GI_number: 15895317 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirB4 components # Organism: Clostridium acetobutylicum # 239 751 38 576 617 80 22.0 2e-14 MNLFKKKQSKKQTLSSNVEKVDKKVKKRVQQQANPTVQESIFYTSQFEEGLMHIVEDEFS KCYKLGEVDYEIAVEEDQLNTVMGYAEGLNTLDKNSRYQLLVVNKREEESLMEDVLLSYQ GDHLDNYRQEINEIITKQYEQDERNFKIEKYAIFTTKSSSMKQANKELEGIMQNFANRFE ANQIKLEVTPMTGLERLSLFSYFLRHGQYFGTSYQDIAVSGLTSKAFIVPSKIKFPNNKA YFRLGENYAAVLTIQQYPKYLEDKLIKELCATGRELAISIHARPYDMMEARKAIQGTKTL NDVAIQKQQKQNFRSGVSEDAISGEAKEIQETTNALMDEIKNNGQKLFNGLFSVFLIAET EKELLEAVESVKNVGATWQVVFDTVDNYKEEALNTILPIGKPYLDVEMSYMRDLTTTNIA TQVPFTNVELQSPTGQFYGRNQLTKNMIIIDRKKDLITPSGLIFGTSGSGKGMATKWEIL STRLKFPKDRFLIVDPESEYLPIGKELDAEILDISTGTKNHLNILGMVDKQLLDEEDQEL DLVKEKSNLLSTMFESLLKSYTDVDAGLVDRVTLLTYERFENKETEPTLVDWFRILKEQT DEGAKELANKVETYCVGSQDIFAHQTNIDLTAPFIVFNTKKLDDRLKKFAMKVILDQLWK QVVSGQGKVTSRLYFDELQVNFTTEEEAEWFLNLWARIRKYGAVTTGITQNPTTLLDSKA GQKMIANSEFLILLRQKPIDSQRLVEILSLTPALKKYINDRAPQGTGLISAGGVVVPFEN PIPKETHLFEIMNTDA >gi|284795477|gb|ADDQ01000072.1| GENE 9 6466 - 8979 2290 837 aa, chain + ## HITS:1 COG:L159324_2 KEGG:ns NR:ns ## COG: L159324_2 COG3942 # Protein_GI_number: 15673889 # Func_class: R General function prediction only # Function: Surface antigen # Organism: Lactococcus lactis # 758 832 1 74 115 73 49.0 2e-12 MVENKRTWKEKVHVETQVEERLRKNLTLKSREATKLQKKALKTTKKEFKLSKKNYKQSLK KHKLTLKTGKEPLSINHLLDKKKFVEQKKRKKAQKIAYKRTKKVDQTRVVNQVKRETKEG LKREATQKVRTTLTKEDTLNEAMTLYEKTQQAKFNMRTALKTGKTVKNLSVKTAKDTYGL GNRLFNFSRGRGFQRTPKDFTVKKQLMKQLRNRAMRFKAAKEAKKAEQGIGLIRSFFNGQ KTLGKVAALILKNPISWVVLLVLFLVFLLSGVASSTQKPAIVQEEEDLTASWTYFTKLDA QHTDDNNQFYSNIDDVLFYMNYRYDDFKLLDMDSTGTKNFETILSDLWTALNGKKPDYQL KTMQSLETDKKSSYFIEEEQAKHYQEIKKELGYQTLDDLLSFPVKTDALIVNKRYGYDKS KEKLTLYQGIDVLIEANQPFHSPMNGQIVSVPDTETLVIEKEKVARLTIRGVNTLRLTKG MDVEEGTFLGNTKNSTVTFQYEKYKKDTKDWFFVNPAFYFPRVTYTQTTLLGSADFSPGA SVEKRAQAVYDYLSKKGYTKEGISAILGNFSVESGINPKRAEGDYLNPPVGAHGNSWDEP SWLSMGGPQIYGGRFPNILHRGLGLGQWTDTADGGRRHTLLLDYAKGKNKKWYDLQLQLD FIFDGDAPGSRTAADNVARSKVAATIPELTTYFLTVWEGNPGDKLGERIQAAQNWFTFFS RSGTPIGGSGSEVFAQYKEKMQPLPTDRETKAGQGWPGNAYAPGNCTWYVFNRFAQLGKS IHPTMGNANQWVHNYRQTPGATLESTPKKGDAVIFTNGVAGSSTQYGHVAYVGAKRS Prediction of potential genes in microbial genomes Time: Sun May 15 13:09:35 2011 Seq name: gi|284795476|gb|ADDQ01000073.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont169.1, whole genome shotgun sequence Length of sequence - 3974 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 4, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 237 251 ## EF0062 5'-nucleotidase family protein (EC:3.1.4.16 3.1.3.6) + Term 249 - 285 2.0 + Prom 265 - 324 13.0 2 2 Tu 1 . + CDS 374 - 2053 2033 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Term 2062 - 2110 15.7 - Term 2050 - 2098 16.5 3 3 Op 1 . - CDS 2101 - 2325 375 ## EF0064 hypothetical protein 4 3 Op 2 . - CDS 2340 - 3326 1236 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases - Prom 3351 - 3410 4.2 + Prom 3301 - 3360 6.6 5 4 Tu 1 . + CDS 3544 - 3973 524 ## COG0632 Holliday junction resolvasome, DNA-binding subunit Predicted protein(s) >gi|284795476|gb|ADDQ01000073.1| GENE 1 1 - 237 251 78 aa, chain + ## HITS:1 COG:no KEGG:EF0062 NR:ns ## KEGG: EF0062 # Name: not_defined # Def: 5'-nucleotidase family protein (EC:3.1.4.16 3.1.3.6) # Organism: E.faecalis # Pathway: not_defined # 13 78 1248 1313 1313 127 100.0 1e-28 KPDPKPDPKPTPETPVATNKQNQAGARQSNPSVTEKKKYGGFLPKTGTETETLALYGLLF VGLSSSGWYIYKRRNKAS >gi|284795476|gb|ADDQ01000073.1| GENE 2 374 - 2053 2033 559 aa, chain + ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 22 558 22 559 559 418 41.0 1e-116 MKSKRIKGLIGLSLTTLLVLAACGGDGGAGAEKAKGGSEKTAAKQEFKVVVQQEMPSADL SLGTDTISFTALNNAYEGIYRLDDKSKPQPAGAKEKVQVSDDGLTYTVKLREEAKWSNGD PVTAADYVFSWQRTADPQTGAEYAYFLEMIENGADIVAGKKPVSELGIKANGDYELEIKL AKPTPYFDYLLAFPLFFPQHQATVEKYGKDYAASSEKAVYNGPFVLANFEGAGSDTNWTL EKNENYWDKDNVKLDKINFDVVKEAPTALNLFQDGQADDVILSGELAQQMAKDPELVIEK EARTSYLEFNQRDKNSPYNNVNLRKAISAAIDRNALVDKILGDGSVVATGLIPEEMSYSP TDDKDFADENKKIVEYSPEKAKEYWAKAKKELGITTLKMDIVADDVDSTKKLAEYIQGTL KDTLEGIDVTVSPVPFSVRIDRGSRGDFETILGGWAADYADPSSFLDLFVTGNNYNRGRF SSKAYDELIEASATRDASDPEKRWEDMVKAEKLLIGEETALAPLYQKATAHLRSKEVKGV VAHGAGAQYDYKWTYVTEE >gi|284795476|gb|ADDQ01000073.1| GENE 3 2101 - 2325 375 74 aa, chain - ## HITS:1 COG:no KEGG:EF0064 NR:ns ## KEGG: EF0064 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 74 1 74 74 103 97.0 2e-21 MLEVLKRINTLAQKEREQGLTPEEQALRVDLRQEYLRTIREQFNKTLMGVTIYDPTGEDV TPEKLKEEQQKHFD >gi|284795476|gb|ADDQ01000073.1| GENE 4 2340 - 3326 1236 328 aa, chain - ## HITS:1 COG:BS_yceB KEGG:ns NR:ns ## COG: BS_yceB COG2141 # Protein_GI_number: 16077357 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Bacillus subtilis # 20 328 3 313 313 233 42.0 4e-61 MKLSILDQLTVPKNQSASDTLQEAKELAQLAEKLGYTRIWYAEHHGSDAFASATPEILVA HIASATEKIRVGAGGIMTMHYAPFKVAETFKTLAALYPDRIDLGMGRSPGGSPLTTLALN NGQPPQLDQFDKLPEILLFLREEFPEDHLYSKISAVPREVLLPQPWLLGASKESARSAGE YGINFSFAQFIHGHLPKEVLSAYYKHFRPVTEQQEPQVSAAYFTFAADTKEEAEYHAASF EHYIFATEHGLPNKFLSPEEALAFPYSEMDKLVLEQNKQRFVIGSSQEVAEFFHQQEELG LTEAMLITPGYDKQTRFQSFERLAKELL >gi|284795476|gb|ADDQ01000073.1| GENE 5 3544 - 3973 524 143 aa, chain + ## HITS:1 COG:SP0179 KEGG:ns NR:ns ## COG: SP0179 COG0632 # Protein_GI_number: 15900116 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, DNA-binding subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 132 1 131 197 158 61.0 4e-39 MYEYIIGKVTFVSPYYIVVETNGIGYQISVDNPYRYSGKMDTDIKLYLHQVVREDAQLLF GFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKKT AQQMILDLKGKLGELESSEAAGG Prediction of potential genes in microbial genomes Time: Sun May 15 13:09:43 2011 Seq name: gi|284795475|gb|ADDQ01000074.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont169.2, whole genome shotgun sequence Length of sequence - 12059 bp Number of predicted genes - 15, with homology - 14 Number of transcription units - 8, operones - 3 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 13 - 180 254 ## EF0066 Holliday junction DNA helicase RuvA 2 1 Op 2 . + CDS 193 - 1209 1453 ## COG2255 Holliday junction resolvasome, helicase subunit + Term 1218 - 1266 11.0 + Prom 1265 - 1324 5.3 3 2 Tu 1 . + CDS 1354 - 2049 670 ## COG3010 Putative N-acetylmannosamine-6-phosphate epimerase + Term 2105 - 2141 -0.1 4 3 Tu 1 . - CDS 2135 - 2209 99 ## - Prom 2232 - 2291 3.1 + Prom 2147 - 2206 5.0 5 4 Tu 1 . + CDS 2228 - 4567 2240 ## EF0071 putative lipoprotein + Term 4575 - 4613 5.4 + Prom 5003 - 5062 10.6 6 5 Tu 1 . + CDS 5111 - 6028 806 ## EF0073 Cro/CI family transcriptional regulator - Term 6020 - 6065 15.0 7 6 Tu 1 . - CDS 6071 - 6724 686 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - Prom 6873 - 6932 7.0 + Prom 6859 - 6918 10.7 8 7 Op 1 . + CDS 6998 - 7891 173 ## PROTEIN SUPPORTED gi|163797523|ref|ZP_02191474.1| 50S ribosomal protein L9 9 7 Op 2 . + CDS 7904 - 8476 581 ## EF0077 hypothetical protein 10 7 Op 3 . + CDS 8489 - 8680 324 ## EF0078 hypothetical protein 11 7 Op 4 . + CDS 8693 - 9205 724 ## COG1302 Uncharacterized protein conserved in bacteria 12 7 Op 5 . + CDS 9264 - 9824 926 ## COG1302 Uncharacterized protein conserved in bacteria 13 7 Op 6 . + CDS 9848 - 10090 457 ## COG2261 Predicted membrane protein + Term 10107 - 10151 13.2 + Prom 10239 - 10298 7.1 14 8 Op 1 . + CDS 10457 - 11692 1427 ## COG0477 Permeases of the major facilitator superfamily 15 8 Op 2 . + CDS 11713 - 11892 311 ## EF0083 hypothetical protein + Term 11910 - 11963 2.1 Predicted protein(s) >gi|284795475|gb|ADDQ01000074.1| GENE 1 13 - 180 254 55 aa, chain + ## HITS:1 COG:no KEGG:EF0066 NR:ns ## KEGG: EF0066 # Name: ruvA # Def: Holliday junction DNA helicase RuvA # Organism: E.faecalis # Pathway: Homologous recombination [PATH:efa03440] # 2 55 151 204 204 95 100.0 4e-19 MVTTSNQALAEALEALSALGYSDREIKRITKQLEALGETTTDVYLSNALKFMMKR >gi|284795475|gb|ADDQ01000074.1| GENE 2 193 - 1209 1453 338 aa, chain + ## HITS:1 COG:SP0259 KEGG:ns NR:ns ## COG: SP0259 COG2255 # Protein_GI_number: 15900193 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, helicase subunit # Organism: Streptococcus pneumoniae TIGR4 # 6 334 3 331 332 466 71.0 1e-131 MTEEERLLSAASQEAEASIEKSLRPQFLAQYIGQDKVKQELTIYIEAAKNRNEALDHTLL YGPPGLGKTTMAMVIANEMNVNIRTTSGPAIERAGDLVAILNELEPGDVLFIDEIHRLPR VVEEMLYSAMEDFYIDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISH MEYYQEQDLKEIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQSDG KIDRAIADKALTLLQVDHQGLDYVDQKLLKTMIDLYGGGPVGLSTLSVNIGEETETVEDM YEPYLIQKGFIKRTPRGRIATPFAYAHFGYDYLEGRKN >gi|284795475|gb|ADDQ01000074.1| GENE 3 1354 - 2049 670 231 aa, chain + ## HITS:1 COG:BB0644 KEGG:ns NR:ns ## COG: BB0644 COG3010 # Protein_GI_number: 15594989 # Func_class: G Carbohydrate transport and metabolism # Function: Putative N-acetylmannosamine-6-phosphate epimerase # Organism: Borrelia burgdorferi # 4 228 6 229 232 244 58.0 8e-65 MNKEIKGALIVSCQALADEPLHSSFIMSKMALAAKQGGAKGIRANSVVDIRAIRKEVDLP IIGIIKRDYPDAEVYITATMREVDELMAVQPEIIALDATHSKRPNGETLATFFKRIKEKY PNQEWMADCSTLEEMIEAAELGFDYIGTTLVGYTPQSENQRIEQNDFELLREAKKHFTTP IIAEGMIDTPAKVQRVLELGAYSVVVGSVITRPQKITEKFVEATKIKQNQV >gi|284795475|gb|ADDQ01000074.1| GENE 4 2135 - 2209 99 24 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIALYTLIYYQQGLCQTECIPFHY >gi|284795475|gb|ADDQ01000074.1| GENE 5 2228 - 4567 2240 779 aa, chain + ## HITS:1 COG:no KEGG:EF0071 NR:ns ## KEGG: EF0071 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 779 1 779 779 1472 99.0 0 MKGLSKKKRVSTWLALGITVVSCFALSGEVQASVERTKVDEFANVLDVSASPTERTNGVY DTNYFNNFSDLGAWHGYYLPEKSNKELLGGFAGPLIIAEEYPVNLAASLNKLTVKNKKTG ETYDLSQSNRMDLSYYPGRLEQTYELDDLTIHLALIFVSNRTALIQTTLENTGEEPLSLE ASWTGAVFDKIQEGTETLDIGTRLTAKDNDIQVNFGEVRETWNYFATKDTKYTIHHADKV STKIDNRNYTATAEPIELKPKQTYNTYTTESYTFTKEEEAKEQQQAPEYTKNAARYFKEN KQRWQGYLDKTFDQKKTAEFPEYQNALVKSIETINTNWRSAAGAFKHDGIVPSMSYKWFI GMWAWDSWKADVATADFNPELAKNNMRALFDYQIQKDDTVRPQDAGAIIDAVFYNQDSAR GGEGGNWNERNSKPPLAAWAVWHIYQETKDKEFLKEMYPKLVAYHNWWYTNRDHNKNGIA EYGSMVSDAHWQKDDKDQIIKDKNGQPKVDDDAVIEAAAWESGMDNATRFDKEGVGKGDV GVKVFENKNKGKVVGYSINQESVDLNAYLYAEKGYLASIAEELGKKEDYKNYQKEAKKLK KYIQENMFDEKTGFFYDLQINEDGSKTKLLVNRGKGTEGWLPLWAKVATKEQAAAVKKNM MNQEMFNTFMPFPTASKDNEKFAATKYWRGPVWLDQALFGVEALQNYDYTKEAKEMTQKL FLHAEGLMGEGPIHENYDPLTGKGLSTKNFSWSAAAYYLLYKNTLLSNNPTTQTAFEIK >gi|284795475|gb|ADDQ01000074.1| GENE 6 5111 - 6028 806 305 aa, chain + ## HITS:1 COG:no KEGG:EF0073 NR:ns ## KEGG: EF0073 # Name: not_defined # Def: Cro/CI family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 305 1 305 305 531 94.0 1e-149 MDVLEALKYFRKKKKIAQKDVLPKKGKQTYRRIEIGEAKLSYEDLMTALQSLGITFNEFF HMVSETRSTASSKIMHQIECCQMGLNNTSEKKNLIHYFYQLERNPQKNAVEMSIYTDIKL TFSNDWEEIPEFDETDRMAILALISSKSYYTYYDYQMVTNTGALFSENEVLQILEQMFPV KDAELRDTQTLNVAYGFYLNIITGELYKKNYAKAREYLALVSVTTIPAEIYYIHFNLRYL KNLTYYLYTGKMRYYKEVITVIDMIESFGDARLAEGMKKEMLQLTAGRTFNLDYGQFPVN IVTEK >gi|284795475|gb|ADDQ01000074.1| GENE 7 6071 - 6724 686 217 aa, chain - ## HITS:1 COG:lin1218 KEGG:ns NR:ns ## COG: lin1218 COG0664 # Protein_GI_number: 16800287 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Listeria innocua # 2 216 3 218 219 275 64.0 6e-74 MRNVLQDYLDEHSFRVVVKKKKNYLTYEGLQDRYAYILKSGIIKTSVISKDGREFNLRYI NNLEIVSLLRDEYSEFIDAPFNIRIESPQAELYQIDRVQFWRDINNSKDLQMYVKEYYRD RLMHSMKKMQQMLMNGKFGAVCTQIYEMYDSFGVETEEGILIDFVVTNEEIAHFCGITSA SSVNRMMQQLKELGAIELRNRKILIKDLDMIKDNIIV >gi|284795475|gb|ADDQ01000074.1| GENE 8 6998 - 7891 173 297 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163797523|ref|ZP_02191474.1| 50S ribosomal protein L9 [alpha proteobacterium BAL199] # 54 270 7 223 259 71 26 3e-12 MTEPNLKDPRKLFYSDGFPQQDQETPALQDKMVPKPDCGEDSYVGNHKLENRRVLITGGD SGIGRAAAIAFAREGADIALHFFPGEEKDAEEVAHYIREAGRKVFLLPADLRDKQAPEKL VAQAHEALGGLDTLVLNAAQQISCAAIEELPMEQVIDTFHVNIIAMFGIVKAAVPHLPAG SSIVTTTSVQAFNPSEHLLDYAATKASIANFTVGLAKQLAPKGIRVNGVAPGPIWTPLQL DHGQPIEELPEFGQHSLLERAGQPAELAPVYVFLASNDASYVTAQVYGVTGGEAINL >gi|284795475|gb|ADDQ01000074.1| GENE 9 7904 - 8476 581 190 aa, chain + ## HITS:1 COG:no KEGG:EF0077 NR:ns ## KEGG: EF0077 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 190 1 190 190 315 100.0 4e-85 MNKVVKILLLLGSLILMALFGAVAITTWSADTAWQPPDNVQWFLQDNEYARQAIFWVALV LLGIMLFLFLFILLFPRRKGTFELKEEQGKLVLHRKAIEGFVRSSLQDSDFLEAPTIRVK ATKRRIKVNVKGTLKRTADLIGQTEAWSKTMEERLARLVGTGHKITIDVHFEDIQSMKRP QQQQTQARVE >gi|284795475|gb|ADDQ01000074.1| GENE 10 8489 - 8680 324 63 aa, chain + ## HITS:1 COG:no KEGG:EF0078 NR:ns ## KEGG: EF0078 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 63 1 63 63 79 100.0 4e-14 MVEWIKQYAVPLIGGLVGLVFAILFLSIGFFKTLLVVLLTGLGIWLGLYLEQTGIVKNYF HHK >gi|284795475|gb|ADDQ01000074.1| GENE 11 8693 - 9205 724 170 aa, chain + ## HITS:1 COG:SP1804 KEGG:ns NR:ns ## COG: SP1804 COG1302 # Protein_GI_number: 15901633 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 9 170 23 184 202 149 51.0 2e-36 MENANVSIVKGELTFEDKVIQKIIGIALEEVDGLLTVDGGFFSNLRDKMINSEDVTTGIH TEVGKKQVAVDMDIVAEYGKDIETIYDQMKEVITREVQQMTHLEVIEVNVNVVDIKTQAE YQEESETVQDKLGNAAEATGSFMSKQTNKAKHAVTKGKTKVKENTAPRVQ >gi|284795475|gb|ADDQ01000074.1| GENE 12 9264 - 9824 926 186 aa, chain + ## HITS:1 COG:SP1804 KEGG:ns NR:ns ## COG: SP1804 COG1302 # Protein_GI_number: 15901633 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 186 1 184 202 167 55.0 1e-41 MSNEKFNNVPKPAGNGPHTPDDHAIKGELTFEDKVVQKIIGLALENVDGLLTVDGGFFSN IAEKLVNTDNVTAGIDTEVGKKQVAVDMDIVVEYGKDIQDIYEKMKELISREVKKMTHLD VIEVNVNVVDIKSKEEYEEDSETVQDKVTGAAKSTGEFASEQTEKAKKAVNKGTEQVKEN MEPRVE >gi|284795475|gb|ADDQ01000074.1| GENE 13 9848 - 10090 457 80 aa, chain + ## HITS:1 COG:SPy1265 KEGG:ns NR:ns ## COG: SPy1265 COG2261 # Protein_GI_number: 15675224 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 1 79 1 79 82 68 69.0 3e-12 MGFIWALIVGGVIGAIAGAITKKGSSMGIIANIIAGLVGSTIGQAILGTWGPSLAGMAIV PSIIGAVILVAIVSWILGRK >gi|284795475|gb|ADDQ01000074.1| GENE 14 10457 - 11692 1427 411 aa, chain + ## HITS:1 COG:lin1217 KEGG:ns NR:ns ## COG: lin1217 COG0477 # Protein_GI_number: 16800286 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 8 391 4 386 401 467 67.0 1e-131 MTEQTPTKLLNKGFISITVINFIVYLVYYLLMVIIAVIAQDSLHATLGQAGLASGIYIIG TLLARLFMGKLLELIGRKQVLRYGALFYLLTTVAYMYMPSMGILYLVRFLNGFGYGTVST ATNAIVTAYIPKNKKGEGINYYGLSTSLAAGIGPFIGMLLLNVSNFHVIINFSIILILLT TIACFIFPVKNIELTPEHREALSKWNFDSFVEKKVLFITFIAFLMGLAYSSVLSFLSSYV KVIDLVDVSTFFFIVYAVVITLTRPSTGRIFDVKGERYVMYPSYIFLTLGLFLLSMTTSG WMLLVSGGLIGLGYGTFMSNGQAVCLQESPSPHRIGIALSTYFIGLDLGLGVGPYVLGEL RNFMSFQQMYFLAGCIPIVCTILYMVFHKAKNDAKDLSLETIEEIEHGSEL >gi|284795475|gb|ADDQ01000074.1| GENE 15 11713 - 11892 311 59 aa, chain + ## HITS:1 COG:no KEGG:EF0083 NR:ns ## KEGG: EF0083 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 59 1 59 59 77 100.0 1e-13 MPNDERILNVLQQTLTEIQRMNTRLAKIETELADVDQHHATLDHYLQELELVTENNNVM Prediction of potential genes in microbial genomes Time: Sun May 15 13:10:08 2011 Seq name: gi|284795474|gb|ADDQ01000075.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont178.1, whole genome shotgun sequence Length of sequence - 4640 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 71 - 784 788 ## COG2188 Transcriptional regulators + Prom 977 - 1036 4.4 2 2 Op 1 11/0.000 + CDS 1078 - 3789 2207 ## COG1554 Trehalose and maltose hydrolases (possible phosphorylases) 3 2 Op 2 . + CDS 3804 - 4454 690 ## COG0637 Predicted phosphatase/phosphohexomutase + Term 4600 - 4640 -0.9 Predicted protein(s) >gi|284795474|gb|ADDQ01000075.1| GENE 1 71 - 784 788 237 aa, chain - ## HITS:1 COG:lin1221 KEGG:ns NR:ns ## COG: lin1221 COG2188 # Protein_GI_number: 16800290 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 2 235 5 237 237 228 52.0 9e-60 MNKFHDIFLELEQQIVQGDYQPGDLLPSENQLVETYNVSRETIRKALNLLINAGYIQKKQ GKGSIVLNFKKFNFPISGVTSYKELQQTQHIESHTHVVSLEEIPVERNLAQLTGWTEGAP VWRLVRQREIEGEVDILDIDYLIKEIVPELPKHRAEDSIFDYLENDLGLAISYAQKEITV EPLTEMDKQLIGEVEGNHVVVVRSIMNLEDTRCFGYTESRHRLNKFKFVEFARRRKL >gi|284795474|gb|ADDQ01000075.1| GENE 2 1078 - 3789 2207 903 aa, chain + ## HITS:1 COG:L39593 KEGG:ns NR:ns ## COG: L39593 COG1554 # Protein_GI_number: 15672410 # Func_class: G Carbohydrate transport and metabolism # Function: Trehalose and maltose hydrolases (possible phosphorylases) # Organism: Lactococcus lactis # 118 880 6 746 769 515 38.0 1e-145 MTILELTFATNQLTTTFFNHKLEPLHQKTFPFEALTIEETVPELCQLIVAEAAPILGGIV ADFPEDFFSPEETLALVPQAVIQAFAEQLNTPLLTAAEQAAAPNLLAAFEEKRQYLAWHL DYYGYVPGKNEYAVESLLTVGNGFLGLRGTTPEMTISDDHYPATYIAGLYNTAASEVAGQ VVENEDFVNAPDNQHIALKIGDATDWLTISPDTLQQLHRQLNLKTGLFVAEMILKDADNQ QIKLTTKKIANMAQPNDYHLQYTFEPLNFSAPITLKTVTDGSVYNYNVARYRNLTAKHFQ VTALSAQENKTVIEVCTNQSNLSVRETALITGDFFEKEAIMIQEEAEKIAQVVTVMAHQG TRYTLEKQVFVQASHAEQSWQVPFTPKDSFAAAAQESARAWQTLWQQANITVTGDLMSQK LLRIHSYHLLASASPFSNQAQALDVSITARGLHGEAYRGHIFWDEIFILPFYIQHYPDTA KQLLLYRYHRLEKAKENAAASQYRGAMYPWQSGRDGRETTQKLHLNPLNGHWGEDHSILQ RHVSLAIAYNAWLYWHSTQDHEFMKQYGGEMLLEIAQFWNSAATLDDATGRFFIDKVMGP DEFHEGYPDQAESGLKNNAYTNLMVVWLFEELTNILALFSEEEQAQLFAKTQTTSDDLAR MQQIQNSLEIEVNSDGIIAQYEGYFGLKEIDWTAMKEKYGNIYRMDRILKAEGESPDDYK VAKQADTLMLFYNLDKTRVDQILEDLGYQLPADYLEKNLLYYLKRTSHGSTLSRIVHAQL AEMAQFHELSWQLYQEALYSDYRDIQGGTTAEGIHTGVMAATIHVTLATYAGVDTRQKEL SICPNLPEHWQALAFQFIHQGVTYQFSLTQTSVTITADKDTQLLVQGALIPLTAERPKEV HYQ >gi|284795474|gb|ADDQ01000075.1| GENE 3 3804 - 4454 690 216 aa, chain + ## HITS:1 COG:BS_yvdM KEGG:ns NR:ns ## COG: BS_yvdM COG0637 # Protein_GI_number: 16080508 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Bacillus subtilis # 6 213 5 212 226 199 48.0 3e-51 MTIGFIFDLDGVITDTAKFHYQAWKALADSLGIPIDETFNETLKGISRMDSLDRILAHGH RENAFTPAEKEALAQQKNDHYVQLLEHLTTEDVLPGVVPLLQQAQARHIPCAVASASKNA PLILEKLGVRAYFATIVDPDSLSKGKPDPEIFLAAANSIGVLPQNAIGFEDAQSGIDGLK AAGIYAVGLSASQPLIGADMQVSEMTELSVDALLNR Prediction of potential genes in microbial genomes Time: Sun May 15 13:10:11 2011 Seq name: gi|284795473|gb|ADDQ01000076.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont179.1, whole genome shotgun sequence Length of sequence - 7592 bp Number of predicted genes - 10, with homology - 8 Number of transcription units - 5, operones - 1 average op.length - 6.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 43 - 240 258 ## gi|257080300|ref|ZP_05574661.1| predicted protein + Prom 243 - 302 4.3 2 2 Op 1 . + CDS 382 - 1317 746 ## gi|227518163|ref|ZP_03948212.1| conserved hypothetical protein 3 2 Op 2 . + CDS 1391 - 1534 266 ## 4 2 Op 3 . + CDS 1531 - 1974 440 ## gi|227518165|ref|ZP_03948214.1| conserved hypothetical protein 5 2 Op 4 . + CDS 1964 - 2827 469 ## JDM1_2329 DNA-entry nuclease 6 2 Op 5 . + CDS 2830 - 2961 142 ## gi|257080296|ref|ZP_05574657.1| predicted protein 7 2 Op 6 . + CDS 2972 - 4264 531 ## LACR_0292 hypothetical protein + Term 4360 - 4396 1.2 + Prom 4558 - 4617 11.8 8 3 Tu 1 . + CDS 4646 - 5287 477 ## gi|227518169|ref|ZP_03948218.1| hypothetical protein HMPREF0348_1152 + Term 5293 - 5327 6.2 - Term 6055 - 6094 -0.3 9 4 Tu 1 . - CDS 6176 - 6265 67 ## - Prom 6390 - 6449 6.4 + Prom 6425 - 6484 3.4 10 5 Tu 1 . + CDS 6538 - 7194 331 ## gi|227518171|ref|ZP_03948220.1| conserved hypothetical protein Predicted protein(s) >gi|284795473|gb|ADDQ01000076.1| GENE 1 43 - 240 258 65 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|257080300|ref|ZP_05574661.1| ## NR: gi|257080300|ref|ZP_05574661.1| predicted protein [Enterococcus faecalis JH1] # 1 65 1 65 65 89 100.0 6e-17 MNKEQAFQTLDSLVYAMEKLENESIRSEDNEELEQMLALMNRDWHELYTIYGKAWEEYRK NALEK >gi|284795473|gb|ADDQ01000076.1| GENE 2 382 - 1317 746 311 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227518163|ref|ZP_03948212.1| ## NR: gi|227518163|ref|ZP_03948212.1| conserved hypothetical protein [Enterococcus faecalis TX0104] # 1 311 1 311 311 524 100.0 1e-147 MTLTTEVFHDFLCSSQQTFIFQEEKQTKSLVKIMIDPKSTRFFSVFLNPFLQDGESLSFR QNESIGDVIGIYDSVTDTFFSQAEYLIEWHLKGVDITGFKDLHEVIQQLERELAEQTLAE INQHYNYYYTLEGKYLADLSDWKITTLKNEVRKKLLDGQTTFIIDHSFVQYECTDSEILD LLTEKQATQSRLVKKYLEKNARMLSEHLQKLQFQQQYAKELAENKQFQKEKEIIQAVQKK GMKTITVTYQISDKELTFKMRNIIDSSRDYFSSYDITKKKERDAYDTLTREAIDLLKIKQ ISYGRKVLYAE >gi|284795473|gb|ADDQ01000076.1| GENE 3 1391 - 1534 266 47 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSNKELSKKYQESLKQRREKQTKRERALEGTVIAPLTDKNNRKDKNK >gi|284795473|gb|ADDQ01000076.1| GENE 4 1531 - 1974 440 147 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227518165|ref|ZP_03948214.1| ## NR: gi|227518165|ref|ZP_03948214.1| conserved hypothetical protein [Enterococcus faecalis TX0104] # 1 147 1 147 147 262 100.0 5e-69 MREVTAQQLLTEFSIIEKMAQSDAIKQRFCLDNYLAEDVKSAINELNSLYPAYHFEYQEV FGGFGHDLVVTDIAQKVTYDRIPKTRTYGELFQTLAKVYGIHSSAKFHHKPTDRLTEEEF QETIKFYENFDIDTLFSQDDEDKYDES >gi|284795473|gb|ADDQ01000076.1| GENE 5 1964 - 2827 469 287 aa, chain + ## HITS:1 COG:no KEGG:JDM1_2329 NR:ns ## KEGG: JDM1_2329 # Name: endA # Def: DNA-entry nuclease # Organism: L.plantarum_JDM1 # Pathway: not_defined # 63 285 45 270 314 229 54.0 8e-59 MKVKRKKQPYWLGSLLSLVIIGFGLLNHLDLSEQLSSFLSNDIFQEVAKSDKKSLTKKPR NVKTKKSTSAPYDQQQYNQLANLDFQSGGKAAIEVNNGQSSLDIATWKENKVIYGDLDSL NRTTFVTAYLDRKNLGRSEGRERQVWQPTGWHQKQIDGDPIVNRGHLLAYTSSFNFDIDG NFKIGENGSQDNPKNLATQTAFSNQKVQTHYEKLVRDAQKLKGNKVIYQIVTVFRGKELM PRGYWLQAIDSAGTLNFNVYEYNVQPNVVFNYEEGTSQIDRTMKVRE >gi|284795473|gb|ADDQ01000076.1| GENE 6 2830 - 2961 142 43 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|257080296|ref|ZP_05574657.1| ## NR: gi|257080296|ref|ZP_05574657.1| predicted protein [Enterococcus faecalis JH1] # 1 43 1 43 477 89 100.0 8e-17 MTKEEKIILIVRNSDFTYEELEKLPMSSIDSIYKAHVLEKNGG >gi|284795473|gb|ADDQ01000076.1| GENE 7 2972 - 4264 531 430 aa, chain + ## HITS:1 COG:no KEGG:LACR_0292 NR:ns ## KEGG: LACR_0292 # Name: not_defined # Def: hypothetical protein # Organism: L.lactis_SK11 # Pathway: not_defined # 5 399 4 427 434 139 29.0 2e-31 MINKVEKRDILILSSFVFVVMLIYNFGIKQMEFGDDAFFLKQFTHDFQSNYYEFLKFRYN EWTSRLVIEIALTQAVQHVFLWRVLNAIAMSIVAIVPALLFNSDNSRRGLIIGTGMSLLI PASMINNAGWIATTTNYVWVMAAALLSIWPIMNYIRGKSVNWVSLILSLVFLIYATNQEQ MVVIMLVSLLILAGILFLSKKNILITLPHIAIVIASFVFILTCKGNAARNVQETKQWLPN FSSYSIFDKLQIGYSSTLKALFFEWSPLMLAFVLLILTAGLVKNGTLVKKMISGIPLLTY LICTRFNAIIDQTYDIASGKTYMSLLVLLTGLVFLYVIGIFGASNNTLEFLSVIFLLILG VGSRIMMGFSPTIWVSGSRTYYFTYVLIMMSGVYLISQLPKNNQSRTFKVLCGYFLVLVL LLIMMYTKIL >gi|284795473|gb|ADDQ01000076.1| GENE 8 4646 - 5287 477 213 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227518169|ref|ZP_03948218.1| ## NR: gi|227518169|ref|ZP_03948218.1| hypothetical protein HMPREF0348_1152 [Enterococcus faecalis TX0104] # 1 213 1 213 213 387 100.0 1e-106 MEITFSKKSKFFCLAMSLLMILSLFASAGTSVYASELDNEISKEDKAILDNIDVNSFYSD ANKGLDEFFSKAVSVNPTNGKFIVNENGIKDMFGSGVEYEAILDFIEFFNDDNNFNELGR FEFRNNISTLAQGAIPIQPRAGGALAKCAVDWAKNTFGVGISVAAFKSVLNTYGFARAAA WLAGKVASAAGRNVAAVLTLVYTAMTCAPIEAE >gi|284795473|gb|ADDQ01000076.1| GENE 9 6176 - 6265 67 29 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MENLVIVLTLISCALSIVESIVGILLAIF >gi|284795473|gb|ADDQ01000076.1| GENE 10 6538 - 7194 331 218 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227518171|ref|ZP_03948220.1| ## NR: gi|227518171|ref|ZP_03948220.1| conserved hypothetical protein [Enterococcus faecalis TX0104] # 1 218 1 218 218 374 100.0 1e-102 MEKINKDQENKIMKDIEFLWTCTTEMNAYFTILRQLQKNTDIFQEQMNLSKAFYHYTYNA LIVATFTEVSKIYDRNSKTNYFTVIEYCQKHIDLLLQIRKEKEKSDNIEENRKVDRKYLE DIFSKLKSDITKLEPAFKNLKTQRDKIYAHNDSRSRDGVETIIENNPISLKDMEELLSCA TISLQFIYALITLIKRNPLPNNIGDLDATLIKLQEKRE Prediction of potential genes in microbial genomes Time: Sun May 15 13:11:12 2011 Seq name: gi|284795472|gb|ADDQ01000077.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont180.1, whole genome shotgun sequence Length of sequence - 637 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 130 - 636 195 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|284795472|gb|ADDQ01000077.1| GENE 1 130 - 636 195 168 aa, chain - ## HITS:1 COG:SA1622 KEGG:ns NR:ns ## COG: SA1622 COG2801 # Protein_GI_number: 15927378 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 1 147 37 183 189 197 62.0 6e-51 DLTYVRVGKKWNYVCFILDLFNREILGYSCGEHKDAVLVKKAFSRIKQPLTEVEIFHTDR GKEFDNQAIDELLTTFDINRSLSHKGCPFDNAVAESTYKSLKVEFVYQYTFETLQQLDLE LFDYVNWWNHLRLHGTLGYETPVGYRNQRLAQRILDNELGCANASEAV Prediction of potential genes in microbial genomes Time: Sun May 15 13:11:13 2011 Seq name: gi|284795471|gb|ADDQ01000078.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont181.1, whole genome shotgun sequence Length of sequence - 729 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 23/0.000 + CDS 76 - 366 243 ## COG2963 Transposase and inactivated derivatives 2 1 Op 2 . + CDS 402 - 729 112 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|284795471|gb|ADDQ01000078.1| GENE 1 76 - 366 243 96 aa, chain + ## HITS:1 COG:BH0334 KEGG:ns NR:ns ## COG: BH0334 COG2963 # Protein_GI_number: 15612897 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Bacillus halodurans # 1 94 1 94 94 109 70.0 1e-24 MSKRTRRTFSQEFKQQIVNLYLAGKPRVEIIREYELTASAFDKWVKQSKTSGSFKEKDNL TPEQKELLELRKRNQQLEMENDILKQAALIFGRRDK >gi|284795471|gb|ADDQ01000078.1| GENE 2 402 - 729 112 109 aa, chain + ## HITS:1 COG:BH0335 KEGG:ns NR:ns ## COG: BH0335 COG2801 # Protein_GI_number: 15612898 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Bacillus halodurans # 1 109 1 110 261 95 45.0 2e-20 MCRILGLSRQSYYYQSKPKKDESELEEVVAEEFIRSRKAYGSRKIKKALSKRGIQISRRK ISRIMKNRGLKSSYTVAYFKIHHSTCNEVKTTNVLNRKFLRDNPLEAII Prediction of potential genes in microbial genomes Time: Sun May 15 13:11:32 2011 Seq name: gi|284795470|gb|ADDQ01000079.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont183.1, whole genome shotgun sequence Length of sequence - 54470 bp Number of predicted genes - 54, with homology - 53 Number of transcription units - 28, operones - 18 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 45 - 1070 1032 ## EF2682 hypothetical protein 2 1 Op 2 . - CDS 1145 - 1921 1008 ## EF2683 hypothetical protein 3 1 Op 3 . - CDS 1961 - 2743 944 ## EF2684 hypothetical protein 4 1 Op 4 . - CDS 2745 - 3080 141 ## EF2685 cell wall surface anchor family protein 5 1 Op 5 . - CDS 3117 - 5288 2045 ## COG4886 Leucine-rich repeat (LRR) protein - Prom 5308 - 5367 4.2 - Term 5372 - 5433 18.3 6 2 Op 1 . - CDS 5478 - 6401 987 ## EF2687 hypothetical protein 7 2 Op 2 . - CDS 6451 - 6600 206 ## EF2688 SNF2 family protein 8 2 Op 3 1/0.333 - CDS 6597 - 9647 3473 ## COG0553 Superfamily II DNA/RNA helicases, SNF2 family 9 2 Op 4 28/0.000 - CDS 9667 - 12804 3514 ## COG0419 ATPase involved in DNA repair 10 2 Op 5 . - CDS 12809 - 13945 1013 ## COG0420 DNA repair exonuclease - Prom 13970 - 14029 7.8 - Term 14051 - 14098 4.0 11 3 Tu 1 . - CDS 14129 - 14755 765 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase - Prom 14890 - 14949 4.5 + Prom 14852 - 14911 6.5 12 4 Op 1 6/0.000 + CDS 14944 - 15678 770 ## COG4123 Predicted O-methyltransferase 13 4 Op 2 . + CDS 15668 - 15934 287 ## COG2827 Predicted endonuclease containing a URI domain + Term 15952 - 16004 18.0 - Term 15931 - 15997 24.3 14 5 Op 1 . - CDS 16001 - 16696 983 ## COG0775 Nucleoside phosphorylase 15 5 Op 2 . - CDS 16712 - 17008 401 ## EF2695 hypothetical protein 16 5 Op 3 . - CDS 17005 - 17589 620 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - Prom 17691 - 17750 9.4 + Prom 17701 - 17760 6.1 17 6 Op 1 4/0.000 + CDS 17992 - 18672 753 ## COG4915 5-bromo-4-chloroindolyl phosphate hydrolysis protein 18 6 Op 2 . + CDS 18692 - 19879 1540 ## COG3853 Uncharacterized protein involved in tellurite resistance + Term 19909 - 19965 17.3 + Prom 19950 - 20009 7.7 19 7 Op 1 . + CDS 20042 - 20863 902 ## COG1051 ADP-ribose pyrophosphatase 20 7 Op 2 . + CDS 20880 - 21404 666 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 21409 - 21457 7.3 - Term 21397 - 21445 11.1 21 8 Op 1 . - CDS 21449 - 21880 504 ## EF2702 hypothetical protein - Prom 21926 - 21985 9.7 22 8 Op 2 . - CDS 22072 - 23196 1001 ## COG1316 Transcriptional regulator - Prom 23263 - 23322 5.1 - Term 23322 - 23376 8.1 23 9 Op 1 . - CDS 23377 - 24561 1202 ## COG1194 A/G-specific DNA glycosylase 24 9 Op 2 . - CDS 24551 - 25351 890 ## COG2137 Uncharacterized protein conserved in bacteria - Prom 25383 - 25442 6.6 + Prom 25387 - 25446 10.1 25 10 Tu 1 . + CDS 25483 - 26853 1331 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase + Term 26859 - 26907 17.2 - Term 26847 - 26895 13.4 26 11 Tu 1 . - CDS 26925 - 27173 385 ## COG2261 Predicted membrane protein - Prom 27249 - 27308 6.2 - Term 27300 - 27346 3.1 27 12 Op 1 . - CDS 27354 - 30431 3191 ## COG3250 Beta-galactosidase/beta-glucuronidase 28 12 Op 2 . - CDS 30409 - 31908 1580 ## COG0531 Amino acid transporters - Prom 31944 - 32003 8.7 + Prom 31928 - 31987 5.9 29 13 Tu 1 . + CDS 32057 - 32887 649 ## COG2207 AraC-type DNA-binding domain-containing proteins + Prom 33064 - 33123 8.9 30 14 Tu 1 . + CDS 33207 - 34079 507 ## EF2713 cell wall surface anchor family protein + Term 34161 - 34197 3.2 - Term 34269 - 34307 7.0 31 15 Op 1 47/0.000 - CDS 34330 - 34698 571 ## PROTEIN SUPPORTED gi|29377194|ref|NP_816348.1| ribosomal protein L7/L12 32 15 Op 2 43/0.000 - CDS 34761 - 35261 787 ## PROTEIN SUPPORTED gi|29377195|ref|NP_816349.1| 50S ribosomal protein L10 - Term 35508 - 35553 10.0 33 16 Op 1 55/0.000 - CDS 35584 - 36273 1156 ## PROTEIN SUPPORTED gi|29377196|ref|NP_816350.1| 50S ribosomal protein L1 - Prom 36297 - 36356 2.7 34 16 Op 2 . - CDS 36385 - 36807 679 ## PROTEIN SUPPORTED gi|29377197|ref|NP_816351.1| ribosomal protein L11 35 17 Tu 1 . - CDS 36930 - 38426 1497 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 38636 - 38695 5.2 + Prom 38508 - 38567 4.4 36 18 Op 1 9/0.000 + CDS 38802 - 39470 694 ## COG1760 L-serine deaminase 37 18 Op 2 . + CDS 39493 - 40365 1098 ## COG1760 L-serine deaminase + Term 40381 - 40439 4.2 - Term 40369 - 40425 15.0 38 19 Op 1 . - CDS 40430 - 41275 948 ## COG2362 D-aminopeptidase 39 19 Op 2 . - CDS 41272 - 42375 1014 ## COG1363 Cellulase M and related proteins 40 19 Op 3 . - CDS 42389 - 44017 1697 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 44256 - 44315 5.6 + Prom 43989 - 44048 13.9 41 20 Tu 1 . + CDS 44095 - 44817 395 ## EF2727 phosphosugar-binding transcriptional regulator, putative + Term 44863 - 44926 21.1 - Term 44859 - 44903 12.4 42 21 Op 1 . - CDS 44910 - 45788 950 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold - Term 45810 - 45861 8.2 43 21 Op 2 . - CDS 45908 - 46453 804 ## COG0250 Transcription antiterminator - Prom 46474 - 46533 7.4 - Term 46492 - 46532 1.1 44 22 Op 1 . - CDS 46578 - 46748 321 ## EF2730 preprotein translocase, SecE subunit 45 22 Op 2 . - CDS 46769 - 46921 267 ## PROTEIN SUPPORTED gi|29377208|ref|NP_816362.1| ribosomal protein L33 - Prom 47068 - 47127 6.1 + Prom 46754 - 46813 3.9 46 23 Op 1 . + CDS 46872 - 46994 106 ## + Prom 47095 - 47154 7.3 47 23 Op 2 . + CDS 47207 - 47845 704 ## COG0517 FOG: CBS domain + Term 47886 - 47949 13.2 - Term 47873 - 47936 13.2 48 24 Tu 1 . - CDS 47993 - 49135 235 ## EF2794 hypothetical protein - Prom 49305 - 49364 12.6 - Term 49159 - 49201 2.2 49 25 Op 1 . - CDS 49433 - 50335 1202 ## COG0812 UDP-N-acetylmuramate dehydrogenase 50 25 Op 2 . - CDS 50407 - 51321 856 ## COG0673 Predicted dehydrogenases and related proteins + Prom 51388 - 51447 7.8 51 26 Op 1 . + CDS 51528 - 52283 727 ## COG0708 Exonuclease III 52 26 Op 2 . + CDS 52318 - 52851 526 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases + Term 52874 - 52927 9.6 + Prom 52862 - 52921 1.5 53 27 Tu 1 . + CDS 52972 - 53562 264 ## gi|293384594|ref|ZP_06630460.1| conserved hypothetical protein + Term 53580 - 53624 6.3 - Term 53567 - 53612 11.1 54 28 Tu 1 . - CDS 53662 - 54468 725 ## COG0526 Thiol-disulfide isomerase and thioredoxins Predicted protein(s) >gi|284795470|gb|ADDQ01000079.1| GENE 1 45 - 1070 1032 341 aa, chain - ## HITS:1 COG:no KEGG:EF2682 NR:ns ## KEGG: EF2682 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 312 1 312 341 528 99.0 1e-148 MKNRYFILMILSFYFFAFGIETSAAELRFSVETEIPENQIDKTKTYFDLMMKPDQEQILK VRAANSTDENLVIDVSVKSATTNSNGVIEYGESLTALDKSAPADLSEIIQLKDGGESVEL PAKSEKVVELRVKMPKEEFSGQLAGGITFSEKVDETKDNQKENTNGLAIENRYAYTVAVL LRENETVVQPELSLEKVEPTQRNARSVISATLLNHEAAYLQSMKVTANVKNKKTSNVILE KEQEDMQMAPNSIFNFPIPYEENEMEAGTYVLAMTVEGSGKKWQFTKEFTISKEEAKTFN EKDVTVKKTESKLIYLLIGLLILLLIICLFIILRLKKQKNK >gi|284795470|gb|ADDQ01000079.1| GENE 2 1145 - 1921 1008 258 aa, chain - ## HITS:1 COG:no KEGG:EF2683 NR:ns ## KEGG: EF2683 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 258 1 258 258 446 99.0 1e-124 MKKMIIASSLILATIAVGTLPVQAEEVANRDTDAIVKFKAPDEKDPNSKNPVVDPEDKDG KDPVTPIDPVNPDKPVDEGSTGPLTLDYASSLNFGENIISTKDEIYFASAQVLKDKNNVE KTGPLFAQITDNRGTLEGWTLSAKQNSAFTSATKGQTLEGTEIVFQNASAVTAGQSAAPT SLASVTFGTVGESHNVMVAATDQGAGKWSYLYGNASSIAEVDGRQVMKDVQLKVPGKSVK LNDAYKTTITWTLANTPV >gi|284795470|gb|ADDQ01000079.1| GENE 3 1961 - 2743 944 260 aa, chain - ## HITS:1 COG:no KEGG:EF2684 NR:ns ## KEGG: EF2684 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 260 1 260 260 437 98.0 1e-121 MKKIILSTIPAITLGVAIAPEVNAEETNYESNAIVEFTPDASINKPVDPVNPDTEKPVEP FDPTTPDTGNKPNEGTTGPLSIDYASSLDFGKNKISNKDEKYYANPQYFFLADGSGPDLT NPKPNYVQISDKRGTNAGWALTVKQETQLTATKETLNKVLDGSEIKLSQNKAVSNSKAVT PTAHEVTLVAGDSSNVMSAAEGQGSGTWLSAFGGIEKVEVDGESVDKNTAITLTVPGATP KDAVQYRTVLTWTIADLPSV >gi|284795470|gb|ADDQ01000079.1| GENE 4 2745 - 3080 141 111 aa, chain - ## HITS:1 COG:no KEGG:EF2685 NR:ns ## KEGG: EF2685 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 111 12 122 122 200 97.0 2e-50 MLLGLISSVDVFAETNAYPTNAEVSFYGEYEPPANKEKPDGKIPQRFPKQSEAIPTVSGE SLKHSTSKTVDQKGSGFLPRTGTKQQQMFNYLGIIVILMASFILKKRKKEQ >gi|284795470|gb|ADDQ01000079.1| GENE 5 3117 - 5288 2045 723 aa, chain - ## HITS:1 COG:lin0372 KEGG:ns NR:ns ## COG: lin0372 COG4886 # Protein_GI_number: 16799449 # Func_class: S Function unknown # Function: Leucine-rich repeat (LRR) protein # Organism: Listeria innocua # 110 473 39 384 656 165 33.0 3e-40 MKKMCISAVSALLLANSLLLPVTTFAETTETIASSSEENVSSVSEEKIPETSSAEEQNSA TSSSEIPQSEELTTVETSEEPPNEALAITEAQLMMPQLYAGAILDKATPISTLFPDPAFA ENIRKQLSKSRTSNTVTQAELDKLNKVILENVVVSNVEGVQYLRNLEELSFQDSLNVTDL SPFAKGEFKLLRFLYMRNNKIADLSPLGQAGLINLEGLYVENNQLTTLNGLEGMAALKNL SIQNTTDHPSKITPNNRVTSFDPLRSLRNLETIWAANNQIATLDGLTEANNLLRLYVENN QLKTIAPLANKPRLEELSIMNQTIASLEALSTVPNLRVLYARNNQISSLAPLEKTLNLTV LDVGENQISDISPLKGLTAITGLDVSNQMIILSSVDYIAGKPLQLKNKVVSRDGQLFPPL TISPYGSYDATKGLFEWNLPKAHEGVSYIWESTDKAYLGNFSGTVVQPVKEVFLSETKLS WSKERIEKSMEKTIDIDDFQKTALPFYWQDVDAGNRLQFIVKKEGQEIQKLADETTTNSK TFKEKALLLPELTYGKQQLVVEVYDKGYKIDELALTVTVVGSVRFKTVPTAISFGNELQI ASSTTQYPIVSMDQPLVIRDTRQTGNNWSLALTVTSDFKSESGATLPNILKFRTNHRLQD IPEGQSILVHNQVNGHQETNISDQWKENDQELLLSVPGGTAKAEEYEAKLTWHLMDVPDG SAK >gi|284795470|gb|ADDQ01000079.1| GENE 6 5478 - 6401 987 307 aa, chain - ## HITS:1 COG:no KEGG:EF2687 NR:ns ## KEGG: EF2687 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 307 1 307 307 530 99.0 1e-149 MKQKEYMEYRPLGEEIERIRKGKNIPLRVFDENGVSSRSYQRFVQGNSELRISDLAIIVE ILSISPMEMTEKLTPMSKTVLAKEQFNQAIFSKNFQESSRIVADYRAYYDKSSFALGKQE VMYSMLALEYLFNPQTVVTKEEIIALENQILERLINADVYTIFNLKFLALQKNVGLQPFP TSLLFRVLQSVNEREIIDIRSLEIIEQVIIDFLFAAIVSQNVPHILHVLSMFKEYEVGEN NWRMILWKKIAEKIEMILTNEEIFADWAIFKEQILLSITLFLPKAKQEFFAGQLEKIEDS LKEIKEN >gi|284795470|gb|ADDQ01000079.1| GENE 7 6451 - 6600 206 49 aa, chain - ## HITS:1 COG:no KEGG:EF2688 NR:ns ## KEGG: EF2688 # Name: not_defined # Def: SNF2 family protein # Organism: E.faecalis # Pathway: not_defined # 1 49 1017 1065 1065 84 100.0 1e-15 MIAEGTVEEKMNSLQQEKRELFQKVIQGNEEQLAKMTEEDIRTILSIGE >gi|284795470|gb|ADDQ01000079.1| GENE 8 6597 - 9647 3473 1016 aa, chain - ## HITS:1 COG:lin1685 KEGG:ns NR:ns ## COG: lin1685 COG0553 # Protein_GI_number: 16800753 # Func_class: K Transcription; L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicases, SNF2 family # Organism: Listeria innocua # 5 1013 12 1015 1072 599 35.0 1e-171 MKWSIPERIVEQGREYMQEGRVLSIVQNPEKRIWLSEVLGEELYLVELDGTAKEQDVCEC QYWMEHGYCKHTVAVELALKQRGVSRIIQANQTVSFEKTNRSTAEMFTKGFAKLSKASAE VPLQPLRLEFHLDVIETNNYYPELSTIGLSLKIGLEGTKPKTYIVKNIGDFLQAYEKEMT FMVNKQHQFTLLHDSFSMEIQEILTELAAIYHTSQLLGANGIQVKGKIDKRYLLLPIDRS QSLVEKMNRTGQFILTNQTHKYRYLTFKETSLPLTFTVQKTEEQSFKLTIQNPITTFLAH YHWAIADQTVYLLTEEQEAIYTTLLQLMKRLEEPSIIYEKETVSDLFSEVLPLLEKIGRV SVEESVEELVVHHPLKAVFIFKKIKGRINARIDYHYGEVIFSTNPKYAQLPEVNQEIVRD KAKETAIKQQFQQFAYQQTTTGFEKVLPAGESLYYFFKAEVPAFRQLGEVRMGRKLRELY LDAQHHQPTIEVAEGDSWLDIRFDVTGIDETEIDAVLTSLLRNDAFYTLKSGEILAFDSE EFFHTSAILTKLRKNMHQEDNVIHVPKNQGLMIESLLEDNERAHFSDSFKKMVTDLTHPE NFEAQVPKSLQATLRHYQETGYKWLKMLSHYQFGGILADEMGLGKTLQTITYLLSEKEEE RLKGTALIVAPASLTYNWLAEVKRFAPTLNVQVVSGNRQERAALLQNSTEDILITSYASM RQDVQLYQEMSVGYLILDEAQMVKNSGTKTAQALKSLKVPQRFALSGTPIENNLDELWSI FQMILPGLFPGKKAFREIKPEEIAKMIQPFILRRDKKTVLADLPEKIENNMYSVLTEEQK TVYLAYLKQMQADVSQMDQATFKKNRMSILAGLTRLRQICCDPRLFIEDYTGGSGKVEQV KDFLVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFNEG EKDVFLISLKAGGTGLNLTGADTVILYDLWWNPAVEEQAAGRAHRMGQKKLLKCGG >gi|284795470|gb|ADDQ01000079.1| GENE 9 9667 - 12804 3514 1045 aa, chain - ## HITS:1 COG:L152588 KEGG:ns NR:ns ## COG: L152588 COG0419 # Protein_GI_number: 15673303 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Lactococcus lactis # 1 1040 1 1041 1046 307 29.0 8e-83 MKPLSLTLKNFGPYINETIDFTKFEDSSLFLISGKTGSGKTTIFDGMSYALFGESSGKLR LGKEMRSTFADPSEATEVTLLFKHNEYLYELNRLPEQELFKKRGTGVRKQSAKISLIVKD AQGKELRAYSKRREVDELIQELLHLNANQFAQIVLLPQGEFRTFLIAKSDEKEKVLRNLF GTELYQLFSENLKERLKIANQEIQETQQKIELKTEQLHWSEEPEPTMTLFEKLQLLESQQ QEAQQQLLVEREQIATLKQAKQAKEQVRYAIEERQNLQQQKEELLEKKAKQAEQETVIER LKEQIQQLKWSQKQQSLAEKVFEKRSEKQQKEQETKSKQQALMETQQALTDWQAIMSELE EQQPLIAEKQERLQTIQRQLPQYQEYEQLAQQQIAEQANYQAIQKEYESCQQEKTTLADK VATAKQFIEQEGTLEKANFECSSVADHWQNFVERWQKNQKAWQKISQNQVELHELTQRFA VEQQQKSAEEAKLQTKKSQWASLQIQRLSLLLEEGEPCPVCGSLEHPKQQTHQEVSLEEI NQAERELTEVEKTVQRFTETLSALGAEKQQKESQLQEQEAAYTEEQEQLAAQFADLQLPL TGLTFSQVTPAEIAEVESQLAKEKQQIAQKLTEISVEKDRLAELEEQVAENSQRFEVLRQ QVETMQQSLERITIQQQMIASQLLDATVTYEEMTKQQALLQEELSAFERQKENVTTQGET LKKEEMILESTLTHLEKEQQTLQQTVAQLESQLKAVLTEQGVTEDQLTEWLKEVPTLESQ QEQIALFEQEQTQLTIQLAEIEKKLSSDTFPELSLITTEIEQITQQIEEQEKKYYQLHEK MLNNQQLVQEINAQRTTIEDKFEEVAALQQLADTVNGNNPKKISFERYMLQTYLERVLTV ANQRLDRLTNSRYQFELNHEAGSYRNQTGLEINIYDDNSGTVRSAHTLSGGESFIAALAL ALSLAEVIQEQAGGVLIDALFIDEGFGSLDEEALEMAMEALETIENEGRMIGIISHIGEL KVRIPQQLQIKSNGNGQSTVHYQLA >gi|284795470|gb|ADDQ01000079.1| GENE 10 12809 - 13945 1013 378 aa, chain - ## HITS:1 COG:L0327 KEGG:ns NR:ns ## COG: L0327 COG0420 # Protein_GI_number: 15673304 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Lactococcus lactis # 1 378 1 390 390 264 41.0 3e-70 MKFLHTADWHIGKKLHGFDLLAEQREAFKQILAIAKEEQVDAVVIAGDLYDRSVPAVEAV EIFNEMMIQMNLKEHFPVLAISGNHDSSTRLETGGPWFNQTQFHLNTRLEQAFQPIEIDN TQFYLLPYFEPIAARLYFEDETIRTIQAAMEKVVAKMQESFLPNKKQVLVSHFFVAGSEK TDSETKLTVGGLDVVPTALLEPFDYVALGHLHGKNALQAPNARYSGSPVKFSLSEMTQEK GVWLVETETEVHFQFRALKPLRDIQQLTGSFQQLTDPAFYQEVNRENYLHVQLTDRAIIP NMMNQLRKIYPKIIGLERLNGRETSNGNQKKVVQIEQRSPEEHLHDFFNDVTGEALTEQQ AQWVQEELSTLNQLERGK >gi|284795470|gb|ADDQ01000079.1| GENE 11 14129 - 14755 765 208 aa, chain - ## HITS:1 COG:SP1624 KEGG:ns NR:ns ## COG: SP1624 COG0204 # Protein_GI_number: 15901460 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 195 1 196 249 244 57.0 8e-65 MFFTFMRGVVRVILFVINGNAHYENKEKLPKDQNYVLVAPHRTWWEPLYLAVAGSPKKFS FMAKKELFKNPVLRFILKHANAFPVDREKPGPSAIKTPVKILKNSDLSLIMFPSGTRHSS ELKGGVALIAKMGRVPIVPSVYQGPLTLKELFKRKKVTVRFGEPIDISDIKKMDKDGLAE VERRMQEAFDQLDKEIDPTFKYESTEKE >gi|284795470|gb|ADDQ01000079.1| GENE 12 14944 - 15678 770 244 aa, chain + ## HITS:1 COG:SPy1411 KEGG:ns NR:ns ## COG: SPy1411 COG4123 # Protein_GI_number: 15675331 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 243 5 247 258 280 55.0 1e-75 MLLSGERIDQLYADDIQIIQSKEVFSFSIDAVLLANFPQLPKKGKIVDLCAGNGAVGLFV SRKTAAKIDQIELQPRLADMGQRSILLNKLEKQVTMYERDLKQATEVIKKDSVDLVLCNP PYFKERPTSQKNPNPHLAIARHEIHTSLQEVVTVSADLLKTNGRLAMVHRPDRFLDILHA MENANIAPKKARFVYPKPGKEANVLLIEGIKQGKKDGFRVLPPLFTYNEKNEYEAEMKAM LYGE >gi|284795470|gb|ADDQ01000079.1| GENE 13 15668 - 15934 287 88 aa, chain + ## HITS:1 COG:lin0209 KEGG:ns NR:ns ## COG: lin0209 COG2827 # Protein_GI_number: 16799286 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease containing a URI domain # Organism: Listeria innocua # 1 84 1 82 90 83 64.0 1e-16 MENKKSHYFYVLLCQDGSFYGGYTTEPERRLTEHNSGTGAKYTRLAKRRPVKMIHTEKFE TRSAATKAEAAFKKLTRKQKEQYLKTFH >gi|284795470|gb|ADDQ01000079.1| GENE 14 16001 - 16696 983 231 aa, chain - ## HITS:1 COG:L132777 KEGG:ns NR:ns ## COG: L132777 COG0775 # Protein_GI_number: 15673862 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Lactococcus lactis # 3 231 36 259 259 217 53.0 1e-56 MKIGIIGAMDQEVKILKEKLTDTMSWERAGALFVSGSLGRHEVIVVRSGIGKVASAVTTT LLIHQYGVNMVINTGSAGGIGEGLKVGDLVIADKLAYFDVDVTGFGYAYGQLPGGVPLYF ETSEYLRMEIAKAAEKTGLAIRKGLIVTGDTFVDSAEKIAKIKKEFPEALACEMEGAAIG QAASQFNIPFLVVRAMSDTADGEATQSFDEFIDEAGKKSAEMVIHFVENLV >gi|284795470|gb|ADDQ01000079.1| GENE 15 16712 - 17008 401 98 aa, chain - ## HITS:1 COG:no KEGG:EF2695 NR:ns ## KEGG: EF2695 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 98 1 98 98 103 100.0 2e-21 MSKGPLVTRTELRKRREAEEKEAERRQQEEQKLAEKAYKRKEKEISTFYRKEKKKQKPIN KSRVGEYSKRRERSTWLNKAIIIVAILLAVVAYIVLNL >gi|284795470|gb|ADDQ01000079.1| GENE 16 17005 - 17589 620 194 aa, chain - ## HITS:1 COG:lin2079 KEGG:ns NR:ns ## COG: lin2079 COG0494 # Protein_GI_number: 16801145 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Listeria innocua # 5 185 2 180 185 181 54.0 7e-46 MLNYEDFEEKTLQRREIFKGKIIDVFLDDVALPTGGTAKRELVFHSGAVAMIPLTAEGKI VLVKQFRKPLEQVILEIPAGKIDPGEENQLETTAMRELEEETGYRAAHLTYINSMYLSPG FANEKLALYLATDLQKVENPRPQDEDEILELYELTIAEAKAEVAKGTICDAKTLFAIQYW ELYLLQRQFKEDTQ >gi|284795470|gb|ADDQ01000079.1| GENE 17 17992 - 18672 753 226 aa, chain + ## HITS:1 COG:lin2080 KEGG:ns NR:ns ## COG: lin2080 COG4915 # Protein_GI_number: 16801146 # Func_class: R General function prediction only # Function: 5-bromo-4-chloroindolyl phosphate hydrolysis protein # Organism: Listeria innocua # 71 226 62 217 219 88 28.0 1e-17 MNKLNTKLLIGYILLGALIIAVAREYGFFAFVILVGFLVFVLYRKKKNAADKSDQMPYLT KDKEAHYRELGLSPQEIDFFRSTMSTAKKQIIQLQENMNRSTKLRAIDLRNDTTKVSKAL FKELVKEPKKLHLANHFLYTHLPNIVDLTSKHLEIEQHEVKNKQTYEKLEESAQIIDQLS KLVKNDYEEIVSDDLDDLDVEMSIAKSSLSQKAATEESPQVNEDQQ >gi|284795470|gb|ADDQ01000079.1| GENE 18 18692 - 19879 1540 395 aa, chain + ## HITS:1 COG:lin2081 KEGG:ns NR:ns ## COG: lin2081 COG3853 # Protein_GI_number: 16801147 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in tellurite resistance # Organism: Listeria innocua # 1 393 1 398 399 377 62.0 1e-104 MTEQQPKETTSVTNTLDDLLSNPFSSMDELTPTQQNELSELKEQQAAPRLIDKLPQERQA QAKELASKIDVQDSQAVITYGSNAQIKLGEFSQAMLNHVQAQDIGPVGDSLTDLMFRLNE ANPNELRAGEGNFIQKMLGKVKQSVYEITAKYQKIGAQIDKIAVKLTHEKDGLLKDNAML DQLYQKNKDYFDALNIYIAAGELKAEELRTQIIPEAMKKAEESGDQMDVQIVNDYNQFLD RLEKRTHDLRLARQITIQQAPQIRLIQNTNQALAEKIQSSVNTAIPLWKNQVVIALTLLR QKDAVTAQRQVSETTNDLLKKNSEMLKISAIETAKENERGLVDIETLQKTQNDLIETIQE TLRIQQEGKEKRQAAEIELGHMEEDLKNKLLELTQ >gi|284795470|gb|ADDQ01000079.1| GENE 19 20042 - 20863 902 273 aa, chain + ## HITS:1 COG:CAC1777 KEGG:ns NR:ns ## COG: CAC1777 COG1051 # Protein_GI_number: 15895053 # Func_class: F Nucleotide transport and metabolism # Function: ADP-ribose pyrophosphatase # Organism: Clostridium acetobutylicum # 34 265 25 294 307 125 33.0 1e-28 MPQFASKAEEKNYYERQASLAEFLTWYHQQELPEYEKPSLTVDMVLLCYNKEADQLKVLL IQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLHSFSRPDRDPR GWVVTVSYLAFIGEEPLIAGDDAKEVHWFNLERHGQHITLSHEDVEITLDLKTAASLGKD TLAFDHSEIIIKAFNRVVDKMEHEPQVLQVLGKDFTITEARKVFAKFLGVDYRSIDHSNF KKAMTQYFEELGERPVGIGRPSKIYQLKTTTGF >gi|284795470|gb|ADDQ01000079.1| GENE 20 20880 - 21404 666 174 aa, chain + ## HITS:1 COG:L36177 KEGG:ns NR:ns ## COG: L36177 COG0454 # Protein_GI_number: 15674159 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Lactococcus lactis # 3 173 2 167 169 126 39.0 2e-29 MTVYLRKAEPSDLPDILGIIEDGRRTLQKSGIPQWQNGDGPNQEILAKDIDQQTCYILMV EDALAGVGVLCSEIDPAYEAIFNGSWQPHSQTTYTAIHRVALKSSFQGQGLALVLLRSLV TAARLQGATDIRIDTHPQNLAMQHLIKKAGFVYQGDVILDVNDGERYAYQMILK >gi|284795470|gb|ADDQ01000079.1| GENE 21 21449 - 21880 504 143 aa, chain - ## HITS:1 COG:no KEGG:EF2702 NR:ns ## KEGG: EF2702 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 143 1 143 143 272 100.0 2e-72 MFSYTDTILSIMQRIEVYNEIFKAISKEVQEYGCNQAAHRRGRDTYMFCRNNVNRFFTEE MMFRKNLEPYYDKEATKILLEGLDTYKEGVFFWLEALSESCQVTDELKYQLGIRQKESSY LLINQACKEACEGIQSAHSVHKM >gi|284795470|gb|ADDQ01000079.1| GENE 22 22072 - 23196 1001 374 aa, chain - ## HITS:1 COG:lin2662 KEGG:ns NR:ns ## COG: lin2662 COG1316 # Protein_GI_number: 16801723 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 3 309 17 333 349 155 32.0 1e-37 MSRKRKISLISLVIILFFVTVGSAYFAVAGSYLKKTIDKGYVPIKNDYTEAQNKDSQSFL VMGLDNTIERKLGTTRTDAMMVITVNNKTKKITYLSLPRDSFVQIDAKNYQGMQRIEAAY TYDGPTASVNTVEKLLNIPINHYVVFNFLSFIKLIDAVGGIDVNVKQAFDGVTKDGPGSI HFDAGKQHLDGTKALSYARERHSDNDIMRGFRQQEIIQAVEDKLKSGQSIMKIMDIIDSL NGNIQTDVDSNELTHLVKEGLTWTNYDKQQLSFDWRTFSNEGRSMVELYPDSIENVRHQL RVSLNLEKPDERDQDGYVFHTNGEFLYQSDYTVQDEAAEENEMTSINGNTYIGVPGNTQT GPLPSVKTENGFIK >gi|284795470|gb|ADDQ01000079.1| GENE 23 23377 - 24561 1202 394 aa, chain - ## HITS:1 COG:SP1228 KEGG:ns NR:ns ## COG: SP1228 COG1194 # Protein_GI_number: 15901090 # Func_class: L Replication, recombination and repair # Function: A/G-specific DNA glycosylase # Organism: Streptococcus pneumoniae TIGR4 # 10 389 2 373 381 363 49.0 1e-100 MTNKEPWEAWSPEKVSSFQEDFLAWYEREKRNLPWRANTDAYRIWISEIMLQQTRVDTVI DYFYRFMEWFPTIQDLAEAPDDKLLKAWEGLGYYSRARNLKVAAQQIVSEFGGKMPDTIE DIRSLKGIGPYTAGAIGSIAFNLPEPAIDGNVMRVVSRLFEIDADIAKASSRKVFEAAML KIIDRERPGDFNQALMDLGSAVCTPTSPKCESCPLQQYCAAYQADKMTAYPVKSKKVKPK DVYYVGTIIENKKQEFLLEQRPETGLLANMWLFPIEEISKKQFQQLQKLAQPAETEKQLT LELEPVTEPLVAEEPVNFFTDYETVVWQKRALGEVVHIFSHLKWHILVFYGRNTGELATL ESQRWVAAQQFSDYVFPKPQQKMVELFKKEHKNK >gi|284795470|gb|ADDQ01000079.1| GENE 24 24551 - 25351 890 266 aa, chain - ## HITS:1 COG:BS_yfhG KEGG:ns NR:ns ## COG: BS_yfhG COG2137 # Protein_GI_number: 16077919 # Func_class: R General function prediction only # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 261 1 263 264 132 34.0 6e-31 MTTITRISKDKGEFYLLWLSSGEKLRVSEDILVRQRLLKGQELSDTLIEEIKKASSYDVG LQMAMNYLSYQLRSKKEIFTYLKEKEIVPEDRVKIVQRLEELRLLDDAIFSESYVRTAMR TSDKGPRNVAQQLKQKGISEEDIQHGLTFYTLDEQLNVATATAEKAMKRYRTKSFKDALQ KTRLHLMQKGFTNEIIDLALESLAFEKDEEQEQQALNKEGERLWRANQRFDFSKKVQKVK QSLFQKGFDYDLIQQFISEKEVEHDE >gi|284795470|gb|ADDQ01000079.1| GENE 25 25483 - 26853 1331 456 aa, chain + ## HITS:1 COG:lin1815 KEGG:ns NR:ns ## COG: lin1815 COG2265 # Protein_GI_number: 16800882 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Listeria innocua # 1 456 1 457 457 525 56.0 1e-149 MTQQLVKKGQQISLKIKRLGINGEGIGYYKKLIIFVPGALPKEEVTATITNVTPKFAEGT LQSVKKAAKDRVVPPCPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYEL RKTIGMENPWNYRNKAQFQLRQIDGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLV DLLNDFQLPIYDERKNSGIFRTLMVRVGIQTGEVQVVFITQSQKFPQKEKMVRAINEQLP EVVSIMQNVQNKKTSLVMGDDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYN EGIKALDLQPNETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNT HYAVGTAEDLLPKWFKEGFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLA RDLVQLAKVYQVDYLQSVDMFPQTARCEVVVKLTRK >gi|284795470|gb|ADDQ01000079.1| GENE 26 26925 - 27173 385 82 aa, chain - ## HITS:1 COG:L144047 KEGG:ns NR:ns ## COG: L144047 COG2261 # Protein_GI_number: 15673874 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 4 82 2 80 80 77 73.0 7e-15 MHTLWVLIVGAVIGAIAGALTSKGQSMGWIANIVAGLVGSFIGEKILGSWGPHVAGMAIV PSIIGAVILVAVVSFFFGRKNS >gi|284795470|gb|ADDQ01000079.1| GENE 27 27354 - 30431 3191 1025 aa, chain - ## HITS:1 COG:ECs3958 KEGG:ns NR:ns ## COG: ECs3958 COG3250 # Protein_GI_number: 15833212 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Escherichia coli O157:H7 # 1 1015 13 1023 1042 741 38.0 0 MKTWENYKVDSINRLPGRAHFSSFPSKETALLNENKYTQAYKNLNGRWHFLFLEAPEYSP ENFFATDFDTSQMDQITVPGNWQVQGYGKMHYSDLWYNFPINPPYVPTENPTGIYKRTFA IDETFHDKKIILRFCGVDSAYHVWVNGHEVGYSKGARNEAEFDITPYAKIGETNDLTVRV YQWSDGTYLEDQDMWWLSGIFRDVELLGVPENGLEDFFIISDLDDSYQNGHLAITGKFWQ DKGQQVQLELMDQQGKTVLKETVAGNQGTVEFSASLPSVTAWSAEKPYLYQLFITVFSEG EVVEVIPQKVGFRNIHVSGETFLVNGVAIKLKGMNRHDYNPKNGRVVSREEIEKDIRLMK QFNINAIRTSHYPASAYFYDLCDEYGMYVIDETDLECHGFELTGEYDWISNDPEWETAYV SRMVRMIQRDKNHPSILFWSLGNESAFGHNFIEMARIAKEMDPTRLVHYEGDFEAEVTDV YSTMYTWLEHPTRELLMNTIIEISKKPHILCEYCHAMGNGPGNLKEYQELFYAHDKLQGG FIWEWFDHGIESVTDNGEVYYRYGGDFGDDPSNKDFCIDGMLMPDRTPSPSLYEYKKVIE PITTSAIDVLSGEFSLLSRFDFENLAIFKLVYTITEDQTVIQSGTVAVPAIAARAEGRLH LPYHLDFPKKAGAAYYLTLSYQLKETTAYASAGHELATAQFELPIATPGIEITPVGSLMA KEIGPHLYIEGPNFSINFDKVKGALTNVTRDGKKLLHKGPKFTFWRAPISNDMEIIDEMK KKYFLHLEHEIVRSFEWKKVDDFIQVIVKTINGTTNSAWHYQCTYQYLIAPNGEIFFDLK GSPAGKIENAPDMLPRLGVTLHLDKSLSEVKYFGKGPRENYVDSQEAGLLGVYDATVAEM FTNYVVPQANGNHMATKWSAFTDDRGQGVVVTAADSYNFSVSYFEEQALDIAKHTNELQE SEYVVLNIDYKQNALGSYSCGQWQLEKYRTTFEEFQLAFRLTPFNNKEIQAADVAHERVK RPTIS >gi|284795470|gb|ADDQ01000079.1| GENE 28 30409 - 31908 1580 499 aa, chain - ## HITS:1 COG:ECs3960 KEGG:ns NR:ns ## COG: ECs3960 COG0531 # Protein_GI_number: 15833214 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli O157:H7 # 1 478 1 457 477 338 41.0 1e-92 MATHSRERLGSVALMLMTFSAVFAFPSIVNNSIQIGLATIPGYLFGSIFYFLPFILMIAE FASANSENESGVHSWLESVLGPKWAFLGAWSYFFVNLFFFCSLLPNTLIYGSYAFLGQNV FQGNHSTKIIAVISILLFWLMTWVCIKGVSWISKVTSLAGGARLFMGVAFVVLAFVVVFG FGNEPAQEFTTTSIMPTFNWTFFMTMAWILQAVGGGESIGVYIKDVKGGNKTFVRTMIGA TIAVGIMYILGAVAVGLVVPTDVLKGNFSNGIFDIFKILGTYFHIPAAMMVRLVGIILFV GSLGSLALWTAAPVKVFFSEIPDGVFGKWLVKTNEEGNPTNALLVQGIIVTILVAIPALG IGNMDSFLETLINMTASTSLVPVLFLLIAYIGLRWKKETMPRSFRFGNRTFGLIAGIFLL AIFIFVFFMSTVPDPKLIMEEINGTLPKGTASPLGMLAYNIIGLIVFMGFAWICWKRYET KEKNEVGKGEMDYEDLGKL >gi|284795470|gb|ADDQ01000079.1| GENE 29 32057 - 32887 649 276 aa, chain + ## HITS:1 COG:BH2229 KEGG:ns NR:ns ## COG: BH2229 COG2207 # Protein_GI_number: 15614792 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Bacillus halodurans # 6 275 2 279 287 98 28.0 1e-20 MQNVFTNNVSILINDQPISQEFHLYEAGYEKCRPTKPTEFAPINYWVLHYCSDGEGYFST PFMEKQHITAGDLFMIPANCRNIYYPNRQNPWTYHWVGFVGDLSSQYLEKIGLTTENCIL KGTVDKKLESLFKNIYQEAKKHNHFGSLSESFQLLNYLEHHSVTQHENQSQQLFNQIKMD IHENFSNNLSISQLASEYNIDRSYLFKLFQRYEQTNPSIYVQNLKLQKACSLLRKSSLTI TEISFEAGFSSPSYFSKFFFQKKEMTPRQYRQQFLT >gi|284795470|gb|ADDQ01000079.1| GENE 30 33207 - 34079 507 290 aa, chain + ## HITS:1 COG:no KEGG:EF2713 NR:ns ## KEGG: EF2713 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 36 290 1 255 255 379 98.0 1e-104 MIKMKKMFLGLFCFVSITTLSVSNVWAEDSANEASVEKSTVTSLTQETSATTINASTDST ALTAESEELPSLRQTLLNYVGMYGLTETLINRLSDDELDYAKKVSFHFANQDISGTARMI TKLYGEKPIPEDSYSTDYSTLTIDDLKNYLPQIRLSLIYVYDLNSDVVNNLSDQTLVDLI NQVKVDYANQNYPSDVRGDYGLASMADKIKANDYTSINQSAESVSSDTTYTESTLQTTTS SSKKATTSSSIEHKKGIFPSTGEKKSVLFTIIGIILLSLVSIFIIKNKKK >gi|284795470|gb|ADDQ01000079.1| GENE 31 34330 - 34698 571 122 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29377194|ref|NP_816348.1| ribosomal protein L7/L12 [Enterococcus faecalis V583] # 1 122 1 122 122 224 100 8e-58 MALNIENIVAELETATILELSELVKAIEEKFDVSAAAPVAVAGPAAGGAAEEQTEFTVEL TAAGDQKVKVIKAVREATGLGLKEAKAVVDGAPAPVKEAVSKEEAEALKAALEEVGASVT VK >gi|284795470|gb|ADDQ01000079.1| GENE 32 34761 - 35261 787 166 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29377195|ref|NP_816349.1| 50S ribosomal protein L10 [Enterococcus faecalis V583] # 1 166 1 166 166 307 100 7e-83 MSEAAIAKKETLVQAAAEKFESAASVVIVDYRGLTVEEVTNLRKQLRDAGVEMKVIKNSI LSRAAKKVGLDGLDEVFTGPTAVAFSNDDVVAPAKIIDEFAKDAKALEIKGGVIEGKVSS VEQITALAKLPNREGLLSMLLSVLQAPVRNVAYAVKAVAEKNEEVA >gi|284795470|gb|ADDQ01000079.1| GENE 33 35584 - 36273 1156 229 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29377196|ref|NP_816350.1| 50S ribosomal protein L1 [Enterococcus faecalis V583] # 1 229 1 229 229 449 100 1e-125 MAKKSKKMQEALKKVDATKAYSVEEAVALAKDTNIAKFDATVEVAYKLNVDPKKADQQIR GAVVLPNGTGKTQTVLVFAKGEKAKEAEAAGADFVGDDDMVAKIQGGWFDFDVVVATPDM MATVGKLGRVLGPKGLMPNPKTGTVTMDVTKAVEEVKAGKVTYRVDKAGNIHVPIGKVSF DNEKLVENFNTINDVLLKAKPSTAKGQYIKNISVTTTFGPGIHVDQASF >gi|284795470|gb|ADDQ01000079.1| GENE 34 36385 - 36807 679 140 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29377197|ref|NP_816351.1| ribosomal protein L11 [Enterococcus faecalis V583] # 1 140 1 140 140 266 99 2e-70 MAKKVEKIVKLQIPAGKATPAPPVGPALGQAGINIMGFTKEFNARTADQAGLIIPVVISV YEDRSFTFITKTPPAAVLLKKAAKIEKGSGEPNKTKVATVSSDQVKEIAELKMADLNAAD VEAAMRMVAGTARSMGIIVE >gi|284795470|gb|ADDQ01000079.1| GENE 35 36930 - 38426 1497 498 aa, chain - ## HITS:1 COG:L119564 KEGG:ns NR:ns ## COG: L119564 COG0488 # Protein_GI_number: 15672881 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Lactococcus lactis # 1 497 1 511 513 480 50.0 1e-135 MSKIELKQLSFAYDNQEVLLFDQANITMDTNWKLGLIGRNGRGKTTLLRLLQKQLDYQGE ILHQVDFAYFPQTVAEEQQLTYYVLQEVTSFEQWKLERELTLLNVDPEVLWRPFSSLSGG EKTKVLLGLLFIEENAFPLIDEPTNHLDLAGRQQVAEYLKKKKHGFILVSHDRAFVDEVV DHILAIEKSQLTLYQGNFSIYEEQKKLRDAFELAENEKIKKEVNRLKETARKKAEWSMNR EGDKYGNAKEKGSGAIFDTGAIGARAARVMKRSKHIQQRAETQLAEKEKLLKDLEYIDPL SMDYQPTHHKTLLTVEELRLGYEKNWLFAPISFSINAGEIVGITGKNGSGKSSLIQYLLD NFSGDSEGEATLAHQLTISYVRQDYEDNQGTLSEFAEKNQLDYSQFLNNLRKLGMERAVF TNRIEQMSMGQRKKVEVAKSLSQSAELYIWDEPLNYLDVFNHQQLEALILSVKPAMLVIE HDAHFMKKITDKKIALKS >gi|284795470|gb|ADDQ01000079.1| GENE 36 38802 - 39470 694 222 aa, chain + ## HITS:1 COG:L43452 KEGG:ns NR:ns ## COG: L43452 COG1760 # Protein_GI_number: 15672812 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Lactococcus lactis # 1 222 1 223 223 291 61.0 8e-79 MEELRFNSVFDIIGPVMIGPSSSHTAGAARIGKVVRSIFGQQPDSVDIYLYESFAKTYRG HGTDIALVGGLLGMEPDDEQLANSLEIAYEQGMEVCFIPKSEKADHPNSVKIVVSSGDRK LSVTGISIGGGNIQISELNGFKLSLSMGTPTFIVVHQDVPGMIAKVTNILSASDINISTM TVTRESKGEKAIMIIEVDQAEVGDIVMQLAEIPHIYSVNYFD >gi|284795470|gb|ADDQ01000079.1| GENE 37 39493 - 40365 1098 290 aa, chain + ## HITS:1 COG:L44083 KEGG:ns NR:ns ## COG: L44083 COG1760 # Protein_GI_number: 15672813 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Lactococcus lactis # 1 286 1 286 287 332 65.0 7e-91 MFYSIEDLVAQAKDYPSVSELMIATEMAHGGYSRERIIETMEKNLAVMKQSVAEGIAGVT SVTGLTGGDATRLNDYIHSGNFLSGETILQAVRNAIAVNEVNAKMGLICATPTAGSAGVV SGVLLAVIDRLNLTHQQQLDFLFTAGAFGLVIANNASISGAEGGCQAEVGSASAMASAAL VAASGGTPDQSAQAVAITIKNMMGLICDPVAGLVEVPCVKRNALGSSQAFISADMALAGI RSVIPPDEVIHAMYQVGRQMPQIFKETAEGGLAVTPTAQRLSKEILEKQK >gi|284795470|gb|ADDQ01000079.1| GENE 38 40430 - 41275 948 281 aa, chain - ## HITS:1 COG:PH1582 KEGG:ns NR:ns ## COG: PH1582 COG2362 # Protein_GI_number: 14591360 # Func_class: E Amino acid transport and metabolism # Function: D-aminopeptidase # Organism: Pyrococcus horikoshii # 1 281 1 274 278 125 29.0 1e-28 MKIYVSCDIEGLAGIATFDMEKEDTVLFRELYHQHVAWLIEGIQQSAKNEQITEITIADS HSRGLNLAYARLAEMDERISLVSGFPRMDYMMSGLDSSYDVVFFLGYHAGIGKQKGNMDH GYSASVAYDLKINDLAMNETTINAAYASELGVPVGLIIGESGLEEQLFQEKMMPEVPFVS TKESLGRYAIKNRPMQQVREAIVATTSQVLTSFALSELPRYALQTPATVKLQCVTTAQAD RIEMLPMIKRIDGRTVSFVGETMKDVMNGIVAVVGLGGTSY >gi|284795470|gb|ADDQ01000079.1| GENE 39 41272 - 42375 1014 367 aa, chain - ## HITS:1 COG:BH3132 KEGG:ns NR:ns ## COG: BH3132 COG1363 # Protein_GI_number: 15615694 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Bacillus halodurans # 5 357 6 358 361 217 34.0 3e-56 MKKSQAVQLIQELSNANGVSGFETEVVRILQHATADFTIQRLDAIKNLYLEKKNNLSEGP VVLFDAHSDEVGFMIQAIKENGLLRFLPLGGWVPNTISAQKVRIRNREGTYLPGVVTSRP PHFMTPEERQRPLTIADLTIDIGATSKEEVIETYKIDLGAPVIPDVTCCYNEQTDLFLGK AFDCRIGCACLVDVMEELKEETLPFKLVATVTAQEEVGERGALIAAKQVNPDLAIVFEGC PADDTAETPEMIQSAMGKGPMLRYFDVSMITNPEFQEYALEIAKIHKIPVQVSVRSGGGT NGMAITQVQGAPTIVVGIPVRYAHTPHCYVDFQDYQAAKELVIQLIKNLDADKIQALVQP LSKEWNK >gi|284795470|gb|ADDQ01000079.1| GENE 40 42389 - 44017 1697 542 aa, chain - ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 30 540 41 558 559 366 39.0 1e-101 MKSATKQRLSLAAIMVLLLSGCGSVGKETKKQEQQVLRVGIDSELSTADVSLAMDNTAAD VMSQVGEGLFSFDEKGEAKPALATEKVQPSNDGLSYTFTIRKDAKWSNGEPITANDFEYS WKRTVDPKTASPQAYYFEGIKNYRAIVDGGKSKEELGVTAIDDHTLEVELSYPMSYFQQL LAVPAFYPLNEAFVEKTGKNYGTSAESTLYNGAFTLEGWDGTNNTWSYVKNKNYWDQANV SLDKVDVQVVKEVNTGKNLFEGKELDVVKISGEIVAQEQGNAALKIREIPGTYYIQLNTQ KDLLANKNARRAIALSLNSERLAKNVLNDGSKKALGFVPTGFTNQETQKDFAEELGDLNP SEPEKAKELWQTAKKELGIEKAELTILSSDTENAKKISEYVQGALADNLENLTVNVSPVP FNNRLEKSRSGDFDIVVGGWTPVYADPIDFLNLLQSKNSNNFGKWSNKTFDQLLQEANVT YANKYEERWKTLQKADQLVAEEAPLVPLYQLTEARLVDDSVQNLVYGPLGSGYYKSVSMS DK >gi|284795470|gb|ADDQ01000079.1| GENE 41 44095 - 44817 395 240 aa, chain + ## HITS:1 COG:no KEGG:EF2727 NR:ns ## KEGG: EF2727 # Name: not_defined # Def: phosphosugar-binding transcriptional regulator, putative # Organism: E.faecalis # Pathway: not_defined # 1 240 1 240 240 431 98.0 1e-119 MNLDYLKETYHLTKTESQILYYLDQQSTNAADLSIREVAKHCFSSPSSIIRLAKKLNLSG YNELIYKLKEAHFSQPIPFETAPSFETTNEFCQLLAKHKSHLFVILGHDFSRHLAAYISE VFNFHGIPSITTAHTHSINSQNNQNFLFIILSHSGEEKYLKETALLAKEKKHPIISFVGA KNSTLGRLADLVFSTDSYSPFSTSVAQPQMFFGQTLIIFEALICAYLNHEDSIPISPKNK >gi|284795470|gb|ADDQ01000079.1| GENE 42 44910 - 45788 950 292 aa, chain - ## HITS:1 COG:lin0949 KEGG:ns NR:ns ## COG: lin0949 COG4814 # Protein_GI_number: 16800018 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Listeria innocua # 29 292 36 298 300 183 37.0 3e-46 MKHAQKYRYFSLLMGLVLLLSACQIGATTKNDNQAATKEATVELNRTTTPTLFFHGYAGT KNSFGSLLHRLEKQGATTQELVLLVKPDGTVVKERGALSGKATNPSVQVLFEDNKNNEWN QTEWIKNTLLYLQKNYQVNKANIVGHSMGGVSGLRYLGTYGQDASLPKIEKFVSIGAPFN DFIDTSQQQTIETELENGPTEKSSRYLDYQEMINVVPEKLPILLIGGQLSATDLSDGTVP LSSALAVNALLRQRGTQVTSQIIKGENAQHSQLHENPEVDQLLIEFLWPSKK >gi|284795470|gb|ADDQ01000079.1| GENE 43 45908 - 46453 804 181 aa, chain - ## HITS:1 COG:BH0118 KEGG:ns NR:ns ## COG: BH0118 COG0250 # Protein_GI_number: 15612681 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Bacillus halodurans # 5 180 2 178 178 218 62.0 5e-57 METFERNWYVLHTYSGYENKVKANIESRAQSMGMGDYIFRVVVPEETEKEVKNGKEKEIV HKTFPGYVLVEMIMTDDSWYIVRNTPGVTGFVGSHGAGSKPAPLLQEEINHILRSIGMST RQSDLEVALGDTVKIIEGAFSGLEGVVTEIDEEKQKLKVNIDMFGRETSTELDFEQVDNI D >gi|284795470|gb|ADDQ01000079.1| GENE 44 46578 - 46748 321 56 aa, chain - ## HITS:1 COG:no KEGG:EF2730 NR:ns ## KEGG: EF2730 # Name: secE # Def: preprotein translocase, SecE subunit # Organism: E.faecalis # Pathway: Protein export [PATH:efa03060]; Bacterial secretion system [PATH:efa03070] # 1 56 1 56 56 87 100.0 1e-16 MKFFRSVADEMKQVTWPTKKQLRKDTLVVIETSILFAALFFIMDTVIQTAFGWILK >gi|284795470|gb|ADDQ01000079.1| GENE 45 46769 - 46921 267 50 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29377208|ref|NP_816362.1| ribosomal protein L33 [Enterococcus faecalis V583] # 1 50 1 50 50 107 100 1e-22 MATKKAALACSVCGSRNYSKSVSEGKRGERLEINKFCKYCNQYTLHKETK >gi|284795470|gb|ADDQ01000079.1| GENE 46 46872 - 46994 106 40 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MREPQTEQARAAFFVAMFFDLLYSQIYFLTVPLFEKVVKV >gi|284795470|gb|ADDQ01000079.1| GENE 47 47207 - 47845 704 212 aa, chain + ## HITS:1 COG:lin0562 KEGG:ns NR:ns ## COG: lin0562 COG0517 # Protein_GI_number: 16799637 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Listeria innocua # 1 210 1 210 211 254 61.0 1e-67 MLLKSVVIKKDNLTTVNESCTLEEALSILEDSGYRCVPILDESGKIFRGNIYKMHIYRHK ANGGDMSLPVTYLLKNATKFIYVNTSFFKVFFTIKELPYIAVLDENNYFYGILTHSTLLN ILAQSWNVKQGSYVLTIASVGQQGDLAAISKIIAKYSSIASCITLDVDSEEFVRRTLITL PAGTTAETCTAIVEHLERKNFKVVELENLEDE >gi|284795470|gb|ADDQ01000079.1| GENE 48 47993 - 49135 235 380 aa, chain - ## HITS:1 COG:no KEGG:EF2794 NR:ns ## KEGG: EF2794 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 94 354 246 508 516 211 48.0 3e-53 MENIGLITGIYFIFGFCLQVFILTNISAPIGWDVSAIFNGVSALPENKEVISNYLSINPN NSFFFFLMYGISKVMNLFNHTWGSSWFVWQLWNLIFIGILLGICYLLKPSSIVFLIAWTI IMGIKLLTTGKLYKKNVLSFFVAMFFFIITVGCFSIFQKQQTIVNYDAEMQKPWTHFVMM GLTGSGGYSEKDTRKVNSLPTLEKKKKYTTETIKKRLEDYGMVGYTKFLLVKHFNNTDRG DFGWGRDGTPQNPTKPSKSEFQTKLRDTYYQQGKRTNNLRFVMQILWIVVLLGMLLSFFV KDIQGGTLLIIKLTIIGAFLYLLLFEGGRSRYLIQYLPFFYLLSANGLARINDIVSINGI KKSFTSTDYRGSLPIRTDEL >gi|284795470|gb|ADDQ01000079.1| GENE 49 49433 - 50335 1202 300 aa, chain - ## HITS:1 COG:lin1459 KEGG:ns NR:ns ## COG: lin1459 COG0812 # Protein_GI_number: 16800527 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Listeria innocua # 13 299 11 297 298 335 59.0 6e-92 MNTKAMLETLNEITLLVDEPLKNVTFTKTGGPADVLALPKTKKEVEEIVAYCREQGLSWL VLGNASNLIVRDGGIRDVVIMLTEMKEIKVAGTTMIVDAGAKLIDTTYEALAADLTGFEF ACGIPGSVGGAVYMNAGAYGGEIKDVFQSAEVLLADGTIQTMTKEDLNFRYRHSEIQELH CIVLQATFALEKGNHAEIKAQMDELTELRELKQPLEYPSCGSVFKRPVGHFTGKLIQDAG LQGLKWGGAQISEKHAGFIVNIDHATATDYVELIAHIQEVIKEKFDVELQTEVRIIGEEV >gi|284795470|gb|ADDQ01000079.1| GENE 50 50407 - 51321 856 304 aa, chain - ## HITS:1 COG:lin1972 KEGG:ns NR:ns ## COG: lin1972 COG0673 # Protein_GI_number: 16801038 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Listeria innocua # 1 298 2 298 301 189 35.0 4e-48 MKIGVIGLGNIAQKAYLPTYSECRHLAEFVLATRNPETRQKIADQYGFTETVGTIEELIE AKIDACFVHVATKVHGAVVRQLLQAGIHVFVDKPLSEELAEVKELQALAAAKNLRLMVGF NRRFAPYTEVLKNIPEKQTIFIKKNRINTTRETSFMMYDLFLHVVDTAVYLAEGPLHVVQ SKLVEEKGHLKRAILQLETEQTTIVCSMDLHSGANTETFEVTSPTGTYRLENLTHLTIQT EEEYQVKEMGDWTPTLEKRGFYQMVTAFIQAIQKPQEQELKQEKVYESHALCEEMLRQQQ RHVL >gi|284795470|gb|ADDQ01000079.1| GENE 51 51528 - 52283 727 251 aa, chain + ## HITS:1 COG:FN0047 KEGG:ns NR:ns ## COG: FN0047 COG0708 # Protein_GI_number: 19703399 # Func_class: L Replication, recombination and repair # Function: Exonuclease III # Organism: Fusobacterium nucleatum # 1 251 1 251 253 385 72.0 1e-107 MKCISWNVNGLRAVVKKNFMDVFNELDADFFCLQETKLQAGQIDLELPGYHQYWNYAEKK GYSGTAIFAKEEALSVRYGLGVEAHDQEGRVITLEYPEFFMVTCYTPNSQAELKRLAYRM TWEDAFRAYLNELNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEERQKFTELLDS GFTDTFRYFYPEAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDILGS DHCPVEVVLDF >gi|284795470|gb|ADDQ01000079.1| GENE 52 52318 - 52851 526 177 aa, chain + ## HITS:1 COG:CAC0738 KEGG:ns NR:ns ## COG: CAC0738 COG0847 # Protein_GI_number: 15894025 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Clostridium acetobutylicum # 1 159 1 158 306 128 43.0 6e-30 MNFYAFDFETASYDKHSACSIAIVKVENSRIVDEFYTLIKPETPFFWRNTQIHGIHESDV VNAPKFPEVWQQIQHCFQPNRLVVAHNASFDCSVLAGCLDYYGLEQPNYLSLCTVKTSRK LFPEFPNHKLNTVCENLNITLNNHHDALEDSRACAEILLQQEQRFGVEPLKKLVLVK >gi|284795470|gb|ADDQ01000079.1| GENE 53 52972 - 53562 264 196 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293384594|ref|ZP_06630460.1| ## NR: gi|293384594|ref|ZP_06630460.1| conserved hypothetical protein [Enterococcus faecalis R712] # 1 196 1 196 196 289 100.0 7e-77 MYSILYLFTDSLKNAWRSKNQFSTLILIFIISFLTFSALLLTLLFSRWLSQMILLDNYAV IPPLKIFRGLAGISAGTLFFFLISYICRAFFLTFLEQKNDLLILALLGTTKLQILISYAL QPIYYLIFILPLAAFLANKLIQQFIHDFFSEVPGLMHIDSYMQGIFLPLTGSLLFICCCV FLILFRKLNRLIKRDT >gi|284795470|gb|ADDQ01000079.1| GENE 54 53662 - 54468 725 268 aa, chain - ## HITS:1 COG:FN1984_2 KEGG:ns NR:ns ## COG: FN1984_2 COG0526 # Protein_GI_number: 19705280 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Fusobacterium nucleatum # 59 267 1 211 213 137 34.0 2e-32 VADGAIAATHAQRYVTEQKTQAGQPIVTKRMTERLANQSAPETNSQQPKEKQPAKVTGKH QWFPESMRQQLSGIFAKLTKKVTLLQFLDASDEKSLELQSFLTEFASLDQKITLETILKD TEPAKELLYGIEKMPSVVLLDAAGNYTGIKFSGIPSGHEVNSLVLAVYNVGSEGQPLEAS LQKNILALPKRKIEIFVSLTCHFCPDVVAACQRIASINPHVEAEMVDISLFPELKKEKKI MSVPAMLIDGEQMIFGSKTMTEIIEALA Prediction of potential genes in microbial genomes Time: Sun May 15 13:12:35 2011 Seq name: gi|284795469|gb|ADDQ01000080.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont183.2, whole genome shotgun sequence Length of sequence - 31709 bp Number of predicted genes - 33, with homology - 33 Number of transcription units - 13, operones - 9 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 2/0.000 - CDS 3 - 884 442 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 - Term 907 - 955 8.5 2 1 Op 2 . - CDS 981 - 1544 710 ## COG0450 Peroxiredoxin - Prom 1569 - 1628 10.7 - Term 1710 - 1766 17.5 3 2 Tu 1 . - CDS 1785 - 2474 815 ## COG4122 Predicted O-methyltransferase - Prom 2494 - 2553 5.7 - Term 3046 - 3080 5.3 4 3 Op 1 2/0.000 - CDS 3087 - 4091 1013 ## COG0095 Lipoate-protein ligase A 5 3 Op 2 . - CDS 4124 - 4864 1017 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III - Prom 4890 - 4949 3.0 - Term 4951 - 5005 8.3 6 4 Op 1 . - CDS 5010 - 5801 882 ## EF2743 hypothetical protein 7 4 Op 2 2/0.000 - CDS 5822 - 6289 471 ## COG1363 Cellulase M and related proteins 8 4 Op 3 . - CDS 6180 - 6905 710 ## COG1363 Cellulase M and related proteins - Prom 6932 - 6991 10.0 - Term 6998 - 7057 2.0 9 5 Op 1 6/0.000 - CDS 7118 - 8257 1307 ## COG3966 Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) - Prom 8294 - 8353 3.1 10 5 Op 2 7/0.000 - CDS 8392 - 8628 510 ## COG0236 Acyl carrier protein 11 5 Op 3 6/0.000 - CDS 8661 - 9866 1200 ## COG1696 Predicted membrane protein involved in D-alanine export 12 5 Op 4 . - CDS 9863 - 11383 1909 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins 13 5 Op 5 . - CDS 11398 - 11547 157 ## EF2750 hypothetical protein - Prom 11581 - 11640 11.1 - Term 11703 - 11746 9.4 14 6 Op 1 36/0.000 - CDS 11751 - 13847 1865 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 15 6 Op 2 . - CDS 13837 - 14604 290 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) - Prom 14748 - 14807 7.5 + Prom 14854 - 14913 10.5 16 7 Op 1 12/0.000 + CDS 15010 - 17193 1861 ## COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase 17 7 Op 2 . + CDS 17226 - 17822 543 ## COG0602 Organic radical activating enzymes + Term 17827 - 17885 14.2 18 8 Tu 1 . - CDS 17867 - 18985 1178 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair - Prom 19043 - 19102 2.5 - Term 19053 - 19103 9.1 19 9 Op 1 4/0.000 - CDS 19111 - 19869 707 ## COG0390 ABC-type uncharacterized transport system, permease component 20 9 Op 2 . - CDS 19853 - 20515 214 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 21 9 Op 3 2/0.000 - CDS 20530 - 21402 918 ## COG0313 Predicted methyltransferases - Prom 21445 - 21504 5.2 - Term 21428 - 21488 15.1 22 10 Op 1 5/0.000 - CDS 21514 - 21861 420 ## COG4467 Uncharacterized protein conserved in bacteria 23 10 Op 2 7/0.000 - CDS 21854 - 22693 924 ## COG1774 Uncharacterized homolog of PSP1 24 10 Op 3 2/0.000 - CDS 22810 - 23760 881 ## COG0470 ATPase involved in DNA replication 25 10 Op 4 4/0.000 - CDS 23762 - 24091 539 ## COG3870 Uncharacterized protein conserved in bacteria 26 10 Op 5 1/0.000 - CDS 24111 - 24749 858 ## COG0125 Thymidylate kinase - Prom 24777 - 24836 4.5 27 10 Op 6 . - CDS 24958 - 25554 568 ## COG0353 Recombinational DNA repair protein (RecF pathway) - Prom 25626 - 25685 4.5 - Term 25678 - 25721 5.2 28 11 Op 1 . - CDS 25730 - 26392 877 ## COG0819 Putative transcription activator 29 11 Op 2 . - CDS 26404 - 27057 522 ## EF2768 hypothetical protein 30 11 Op 3 4/0.000 - CDS 27048 - 28406 742 ## COG1122 ABC-type cobalt transport system, ATPase component 31 11 Op 4 . - CDS 28403 - 28966 717 ## COG4721 Predicted membrane protein - Prom 29171 - 29230 6.5 + Prom 29140 - 29199 7.8 32 12 Tu 1 . + CDS 29340 - 30125 735 ## EF2771 hypothetical protein + Term 30213 - 30265 10.0 + Prom 30181 - 30240 5.7 33 13 Tu 1 . + CDS 30289 - 31650 1204 ## COG0477 Permeases of the major facilitator superfamily Predicted protein(s) >gi|284795469|gb|ADDQ01000080.1| GENE 1 3 - 884 442 294 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 5 294 1 290 306 174 35 5e-43 MTEEIYDLIIIGGGSTALSAGIYAGRAMMDTLIIEKDKIGGQVTTTSEIVNYPAIRHTTG PELMEEMRIQAQDFGVAFTNDEIIDVDFSQTIKTVQSASQTYQAYAVLIATGASARKIGF PGESEFTGRGVAYCSTCDGEFFQGLDIFVIGGGYAAAEEAVYLTRYGKSVTMIIREPDFT CAKLTAEAAKNHPKIKIVYNTEVKEITGDDFVRKAVFVNNQTGEETVYEAPKDSTFGLFV FAGNKPSTEIFEGKIALDRGYVPTTENMETNIPGVYAAGDLRIKELRQIVTAGG >gi|284795469|gb|ADDQ01000080.1| GENE 2 981 - 1544 710 187 aa, chain - ## HITS:1 COG:TP0509 KEGG:ns NR:ns ## COG: TP0509 COG0450 # Protein_GI_number: 15639500 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Treponema pallidum # 2 187 3 188 188 236 55.0 2e-62 MNLINQKLFDFECDAYHDGEFTRVSTEDILGKWSIFFFYPADFSFVCPTELGDMQEHYAH LQELNCEVYSVSEDSHYVHKAWADATETIGKIKYPMLADPNGQLARFFGVLDEASGMAYR ASFIVSPEGEIKSYEINDMGIGRNAEELVRKLEASQFVAEHGDKVCPANWQPGEETIAPS LDLVGKI >gi|284795469|gb|ADDQ01000080.1| GENE 3 1785 - 2474 815 229 aa, chain - ## HITS:1 COG:SPy1391 KEGG:ns NR:ns ## COG: SPy1391 COG4122 # Protein_GI_number: 15675315 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Streptococcus pyogenes M1 GAS # 3 227 10 233 235 226 52.0 3e-59 MRNEMMHRPVVKPELVEYMRTKQKKLPGELGAVEAEANEAGVPIIPHETVVFLQFLLGQL KPKNILEIGAAIGFSSSLMAQFVGEDGHVTTIDRFDVMIKKAKKTYQRLDLEEKVTLLEG QAAEILPTLEGPYDFIFMDSAKSKYIEFLPECLRLLPVGGVLMVDDVFQAGTILDPAEEV PKKNRAIHRKLNQFLDVVMAHPDLTSTLVPLGDGVILITKEKETIILDS >gi|284795469|gb|ADDQ01000080.1| GENE 4 3087 - 4091 1013 334 aa, chain - ## HITS:1 COG:lin0931 KEGG:ns NR:ns ## COG: lin0931 COG0095 # Protein_GI_number: 16800002 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Listeria innocua # 1 334 1 331 331 404 61.0 1e-112 MIFVPNENNDPRVNLAIETYLLTEMPLDEPILLFYINEPSIIIGRNQNTIEEINKEYVDE HGIHVVRRLSGGGAVYHDHGNLNFSFIMPDDGNSFRDFAKVTQPIIQALQDLGVEGAELK GRNDLVINDMKFSGNAMYATNGRMFAHGTLMFDSDIDEVVNTLKVRKDKIESKGIKSVRS RVTNIKPFLSEDKQEMTTEEFRQEILLKIFGVDSIDQVKTYELTDQDWAAINKISEQYYR NWDWNYGKSPAFNLERRHRFPIGSIEMKMNVADGAIQEIKIFGDFFGLGEIKDVEDILTG VKYDKASLEEAIDQIDVKKYFGNIEKEDLLGLIY >gi|284795469|gb|ADDQ01000080.1| GENE 5 4124 - 4864 1017 246 aa, chain - ## HITS:1 COG:SPy0208 KEGG:ns NR:ns ## COG: SPy0208 COG1234 # Protein_GI_number: 15674406 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Streptococcus pyogenes M1 GAS # 1 240 1 249 259 268 57.0 6e-72 MKLTVLGCLGAYPYKGEGTSSYLLESEGFHLLIDAGSTTLVRLENYLDPLKLDAVILSHY HHDHIADLGVLQYYRQLYPTLEPTPILPIYGHTQDQMHFKELTLPNVSEGKEYFEAEELA VGPFLITFMETIHPVTCYAMRIVEKATGKVFVFTGDSGYLASFEDFAKDADLFLADTYLF EGNERHHAHFTSREAGEIAKAAQVKQLMLTHLPQHGSLEQLREEAQNYAGTEIPVTLAQP DLTVEI >gi|284795469|gb|ADDQ01000080.1| GENE 6 5010 - 5801 882 263 aa, chain - ## HITS:1 COG:no KEGG:EF2743 NR:ns ## KEGG: EF2743 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 263 1 263 263 433 100.0 1e-120 MKSLVTNSQHRANARRALDGQWGIMAWLTFLGVVLQSFLTSIVQNLFSGENQVFQSSFAA VLLQIFVLFALSYALYYAALKVLRGEKVRVNILMSVFQGKYYGPLFVVNLLQKVLERVIG LLFLLPILFGAGTTLYFKLMFNTVTPEEIQAFFLNDFSFFLAFGVATILIFLIGLFVSGV FQFAVWLRFDNPELPIMMALKQALYLMKNRFWQYLCLQFSFIGWYIVGFLAIGIGLLWVI PYNYVALASFYQTALEEKGLAEE >gi|284795469|gb|ADDQ01000080.1| GENE 7 5822 - 6289 471 155 aa, chain - ## HITS:1 COG:BH3132 KEGG:ns NR:ns ## COG: BH3132 COG1363 # Protein_GI_number: 15615694 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Bacillus halodurans # 11 153 217 359 361 198 60.0 4e-51 MQAVMCKKKWGLRGAQTSTHLVNPDIAFALDTGTAGDTPGMTPKEADSVLGEGPQILIYD ASMIPHKKLRDFVIQVAEENNIPFQYTVITGGGTDAGRMHLTRNGIPSLAITVPVRYLHS HTSVIHEDDYFNTVKLVTEVVKRLDKETVAKLTSY >gi|284795469|gb|ADDQ01000080.1| GENE 8 6180 - 6905 710 241 aa, chain - ## HITS:1 COG:BS_ysdC KEGG:ns NR:ns ## COG: BS_ysdC COG1363 # Protein_GI_number: 16079934 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Bacillus subtilis # 8 216 10 217 361 271 61.0 1e-72 MDAKEEKMLIDLTSAEGIAGNEDEVRSLFKKYAAPYADKFLYDGLGSIIAKNVGDKEGPK VYISGHMDEVGFMVTQITEKGFLKFQTVGGWWGQVMLAQQVQIKTTTGKVYHGVIGSKPP HVLTAEVRNKPSEIADMFIDIGASSDQQVAEWGIHPGDMVTPYIDYRRMNDTKFLLAKAW DNRIGTAVSLKVLENLATEGHPNILFAGSDVQEEVGATRCANKYASCESRHSVCFRHRNS W >gi|284795469|gb|ADDQ01000080.1| GENE 9 7118 - 8257 1307 379 aa, chain - ## HITS:1 COG:lin0970 KEGG:ns NR:ns ## COG: lin0970 COG3966 # Protein_GI_number: 16800039 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) # Organism: Listeria innocua # 1 366 45 413 424 259 36.0 5e-69 MAPNVLKGNVIKNKAVASGKYVPFFGSSELSRFSAFHPSVLSEKYQRNYRPFLLGEAGTQ SLTQAMVIHSMGDAIANKKAVFILSPQWFVKKGVPNDSFGAHYSQLQTYQWLANLTELTS GDQYLAQRLTKFPVVQKDKVLMETLANLQAGQLPQRSQRDYFIMNLRFLNREDELFSQIG MVSREPIVEKDMKQLPATYNFNELDQLAGKIAAKAINNNKFEISNGFYRQRIKPVLPKLA HSQKKWDYRFSPEYGDFQAALEQLAEKNVDVLFVIPPVNKRWSDYTGLSQDMLQQVARKL KYQLQEQGFTNIADFSTCSNERYFMADTIHLGWRGWLAVDRQVDEFMKQPASKKLAYQID DRFYQTDWQQQNPLVLPQF >gi|284795469|gb|ADDQ01000080.1| GENE 10 8392 - 8628 510 78 aa, chain - ## HITS:1 COG:lin0971 KEGG:ns NR:ns ## COG: lin0971 COG0236 # Protein_GI_number: 16800040 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Listeria innocua # 1 78 1 78 78 82 65.0 2e-16 MNIQETVLNILEDITGTDEVVNNQDIQLFEEGLLDSLATVQLLVEIEGQLGIQVPVSDFD REVWGTPKQIIQQVEALQ >gi|284795469|gb|ADDQ01000080.1| GENE 11 8661 - 9866 1200 401 aa, chain - ## HITS:1 COG:SP2175 KEGG:ns NR:ns ## COG: SP2175 COG1696 # Protein_GI_number: 15901985 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane protein involved in D-alanine export # Organism: Streptococcus pneumoniae TIGR4 # 4 401 7 412 413 359 48.0 4e-99 MMNFPHMIPYNAPYYFVLLIAALLPMILTLAIKGTRWPWYQTLVTLVFLYISFGGEFWQQ GVALIVYVIYQTLLTWGYAAYRKNKNAGWVFYLAVFLAILPLVWVKVSPFMTGKTTLLGF LGISYLTFKAVQVVMDLRDGVMKEYHPFRYIQFLLFFPTISSGPIDRYRRFEKDLKNPPS AEKYLDFLEKGIFYLFLGFLYKFIISHYLGGVFLPHVEKMALAQGGLSWWTVGYMYNYSL YLFFDFAGYSLLAVGTSYLMGYDTPMNFNKPFLSWNIKEFWNRWHMTLSFWFRDYIYMRL MFFLMKKKVFKSRIVTSNIGYFALFLIMGIWHGLTWFYIAYGLYHATLICVTDAWLRFKK KHKDKIPSNKFTHAFAVFLTFQAVCVSFLIFSGFLDKLWFK >gi|284795469|gb|ADDQ01000080.1| GENE 12 9863 - 11383 1909 506 aa, chain - ## HITS:1 COG:SP2176 KEGG:ns NR:ns ## COG: SP2176 COG1020 # Protein_GI_number: 15901986 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Streptococcus pneumoniae TIGR4 # 4 504 6 514 516 487 50.0 1e-137 MEKVINMIQTIDEWARKEPQRPVYLTEEKVSTYGELKEKSDNLAAYLAELKTDKSAIVVY GELDFEMIVSFLGASKAGFSYIPIDAHTPKERIELILNVAKPTAVIAVHEWPELATEVPV ITAEELTEMMMHAPRHAPALTPVTGASNYYIIFTSGTTGVPKGVQISHDNLVSFTNWLLQ DFGLEEGARFLAQAPYSFDLSVMSIYPALALGGSLTPLPNEIINDFKQLFTRLPQLTIDV WVSTPSFIELCLMEPSFDGEHLPALRTFLFCGEELPKPTAEKLAARFPTAHIYNTYGPTE ATVAISAIEITQEVLKSVQRLPIGYVKEDTQIYIMEGMSKLPAGEIGEIVIAGPSVSKGY LNNPAKTAEAFFQLDGVPAYRTGDAGKLVDNLLQYEGRLDFQIKLHGYRIELEEVDHHLT NVSYVKQAVVVPKYQGNKVQQLIAYVVPQAHEFSSDFQLTKAIKQELATLTMDYMIPQKF VYVEQLPLTSNGKIDRKGLMNEVNAT >gi|284795469|gb|ADDQ01000080.1| GENE 13 11398 - 11547 157 49 aa, chain - ## HITS:1 COG:no KEGG:EF2750 NR:ns ## KEGG: EF2750 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 49 1 49 49 67 100.0 2e-10 MKTTFQKILNNESLKFIGKTLFYSFIVIALIYLYHYKNINGGTFIYNEF >gi|284795469|gb|ADDQ01000080.1| GENE 14 11751 - 13847 1865 698 aa, chain - ## HITS:1 COG:lin2220 KEGG:ns NR:ns ## COG: lin2220 COG0577 # Protein_GI_number: 16801285 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Listeria innocua # 2 693 3 642 646 187 24.0 8e-47 MIFKLSLKNLKAHVPNYLVYYISMTIAAVVYYCFRAIAYNQPLVAGAGRDIEIKRSLGLG STLVTIIILGFMLAANRFFIGKRSQEIGLYRLIGLRKSQVSLIFLVENLVLGFVSLINGI ILGVIFTKLFSMILAKVMFLEVPSFFYISWRSVIETGVAFAFMILIVCLRSIWMIYRYPL SQLMHQEKIGQINYSRLTKRRQFLGILGPICLLAGYFIAFDFRNLATGIVYKQLNDSLDI SIPMIITLTPFIILGLCVVGTYLFFRYTMYFIIRLFNHRKKWYYQDLRMITLGNAKRYLF KSSKTLTGLTLLIATALSGIGVMVFVYTISMHTVNSDGPVDFLVSQESYPKLKKVLDEAK DTKIKNEVTLSYKITGIERSLRIGQAQEEQETIEAVNVLSFSNYRNYQKINPYLNDLHLK NDQSVIYMDSFTNILSGMSRYESKLQFVEGEKAQLQQVLPNYLGNFLLQYSLPTIVVSDA LYQKVTKNSIQYQINAVNVDTKSREKLYEAVNKQIATEWQAPILYKYEKNNQQLSGFAKQ MPNEEVKNTQDDVTETWRLNMNDRYASLRYERKINGLTLYVSMFVAILALFITGSILMLR QLFSAVSERQDYVTLKRMGVSSKAITKQIYRQNSLIFFPPMVIGILHTTFAIYLLSQFIK SPGYLLVYLSCGILIIVYLIFYILTSAIYARMIRHIHF >gi|284795469|gb|ADDQ01000080.1| GENE 15 13837 - 14604 290 255 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 222 1 219 223 116 31 2e-25 MKKIVEVNHVSKTYGRLNNKTEVLDNISFTVDEGEFVGIMGPSGAGKSTLLNVLSSIILP TAGIVRIAGQDILKMRDNQLSDFRRNEMGFIFQSFNLIDTLNVKDNILLPLAVEKVSLEE MDKRLLHVTSILGIQELLSAYPPEISVGQKQRVAAARALITNPKIIFADEPTGSLDSKSA TELLKYLAEINLHDDATILMVTHDPYTASFCNRILFIKDGAIFSEVVRQGSRKEFFNRVI DMQATIGGGGRANDF >gi|284795469|gb|ADDQ01000080.1| GENE 16 15010 - 17193 1861 727 aa, chain + ## HITS:1 COG:SPy2110 KEGG:ns NR:ns ## COG: SPy2110 COG1328 # Protein_GI_number: 15675860 # Func_class: F Nucleotide transport and metabolism # Function: Oxygen-sensitive ribonucleoside-triphosphate reductase # Organism: Streptococcus pyogenes M1 GAS # 17 725 15 722 732 1196 79.0 0 MMKITDEKAEDVNLSTIKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSI VADVNREIAERFTNNVKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERSKATDINV SIGKLINKDQTVVNENANKDSDVFNTQRDLTAGIVGKSIGLKMLPSHVANAHQKGDIHYH DLDYHPYTPMTNCCLIDFKGMLNNGFKIGNADVESPKSIQTATAQISQIIANVASSQYGG CSADRIDELLAPFAERNYEKHLADAQEWIEGEERQKAFARKKTKKDIFDAMQSLEYEINT LFTSNGQTPFTSLGFGLGTNWFEREIQRAILQIRINGLGIEKRTAIFPKLIFTIKRGVNA QPTDPNYDIKQLALECATKRMYPDVLNYDKIVELTGSFKVPMGCRSFLQGWKDEQGEEVN VGRMNLGVVTLNLPRIALEAQGSQEKFWQILNERLAIVKDALVYRVERVKEAKPANAPIL YMYGAFGKRLATQDAVDELFKNKRATVSLGYIGLYEVASAFYGGAWEDNQEAKNFTLDIL KELKKNADNWGNEYGYHFSVYSTPSESLTDRFCRLDTEKFGIVENITDKEYYTNSFHYDV RKNPTPFEKLDFEKDYPKYCSGGFIHYCEYPMLQQNPKALEAVWDYAYDKVGYLGTNTPI DHCYACGFEGDFHPTERGFECPECGNHDPKTCDVVKRTCGYLGNPQARPMVYGRHKEISS RVKHLKN >gi|284795469|gb|ADDQ01000080.1| GENE 17 17226 - 17822 543 198 aa, chain + ## HITS:1 COG:SP0205 KEGG:ns NR:ns ## COG: SP0205 COG0602 # Protein_GI_number: 15900141 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Organic radical activating enzymes # Organism: Streptococcus pneumoniae TIGR4 # 1 196 1 195 196 281 67.0 5e-76 MRNPKPQEWKTEDYSQKKIADYKAFNFVDGEGVRNSLYVSGCLFACEGCFNKAVQNFNYG TPFTESLMNQIIKDLSHDYVQGLTLLGGEPFLNTDVCLSVVKRVRETFGSAKDIWSWSGY TFEELLSETPDKLELLHSIDILVDGRFELAKRNLNLQFRGSSNQRIIDVPKSLAAGKAVI WEKCHDAETSYEQIKKSI >gi|284795469|gb|ADDQ01000080.1| GENE 18 17867 - 18985 1178 372 aa, chain - ## HITS:1 COG:SPy1846 KEGG:ns NR:ns ## COG: SPy1846 COG0389 # Protein_GI_number: 15675671 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Streptococcus pyogenes M1 GAS # 5 357 2 354 364 431 60.0 1e-121 MMSELRFPLKKDTSRKIIHIDMDAFFASVEERDHPELVGHPLVIARHPSDTGGKGVVTTA NYIARQYGIHSAMSAQKAYELCPSAIFKPGNYQKYSEISQEIREIFRRYTDVIEPVSIDE AYLDVTENKVNSKSAIKIAKMIQYDIWHELQLTCSAGVSYNKFLAKLASDFQKPKGLTVV LPEEAEDFLKALPIEDFHGIGKKTVPKMHELGIFTGADLYKQDEMTLIRLFGKMGYSLYR KVRGIHDAPVQVTRDRKSVGKEHTYGTPLTTEEQVTAQLRQLAAGVERALQRVQKHGKTV VLKVRYTDYTTITKRVTLPEYISKKEELFYQANLIWEDILGLEQGIRLLGITLTNLDPLA YENIVLPLWEKS >gi|284795469|gb|ADDQ01000080.1| GENE 19 19111 - 19869 707 252 aa, chain - ## HITS:1 COG:STM0503 KEGG:ns NR:ns ## COG: STM0503 COG0390 # Protein_GI_number: 16763883 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Salmonella typhimurium LT2 # 5 252 6 253 259 261 60.0 9e-70 MDLAVNNLSLFFSAMLVVVALIISTKEKLGFTKDIIISVIRAVIQLVAVGYLLKYVFQVN NLILTLIMVLVIVSNAAFNAKKRSQQLQKGFLISFIAIGCSTGITIGILIFSGSIKFIPS QIIPISGMIASNSMVAIGLCYRNLDTLFQNQRQAVMEKLALGATIKLASLPIIQQSVKTG MAPTIDSAKTVGIVSLPGMMSGLIFAGVDPVHAIKYQIMVTFMLLSATSIGSVIATYLAY KGYYNQQKQLVV >gi|284795469|gb|ADDQ01000080.1| GENE 20 19853 - 20515 214 220 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 193 1 199 223 87 32 1e-16 MSNLLRAEGVSYQVNGRSILSDIDLSFETGSNTTIVGPSGSGKSTFLKILSSLLSPTEGE IFYQEAPITTMSIETYRQKVSYCFQQPTLFGETVYDNLLFPFTVRQEAFNQEKVVALLQQ VKLPAAYLEKKIAELSGGERQRVALLRNIIFVPDVLLLDEVTTGLDEESKQIVNQLLNQL NKEQGVTLVRVTHDTEEIQQAQQVIRIVAGKVAPTDGFSS >gi|284795469|gb|ADDQ01000080.1| GENE 21 20530 - 21402 918 290 aa, chain - ## HITS:1 COG:L6615 KEGG:ns NR:ns ## COG: L6615 COG0313 # Protein_GI_number: 15672384 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Lactococcus lactis # 4 290 19 302 302 294 54.0 1e-79 MQKQKSFDKQTTKGKLYLVPTPIGNLEDMSIRCLNILKEATVIASEDTRNTQKLLNHFEI TTPQISLHEHNYKERIPQLITRLLNGETIAQVSDAGMPSISDPGHELVTACLEEELAVIA LPGPTAGMTALIASGLLPQPFTFYGFLPRKKKEQKDVLSALKEERPTQIFYESPYRIAKT VATFAEVYGQERPAVICRELTKLHEEYLRGTLGELTEYLAENKLKGECCLLVSGFTGEKE TIAAMPAISLKEHVQVLMEEEGRSSKEAIKEVAKLRNVKKQEVYKEYHSI >gi|284795469|gb|ADDQ01000080.1| GENE 22 21514 - 21861 420 115 aa, chain - ## HITS:1 COG:SPy0405 KEGG:ns NR:ns ## COG: SPy0405 COG4467 # Protein_GI_number: 15674542 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 109 1 104 107 76 41.0 1e-14 MDKRSLYDGLNSLETDLDSSVAQLREIKAALHELVEKNTTLEIENQRLREHLQELNKLAG NTTETEKQELSKSRMNLEKLYEEGFHVCNILYGSRRENDEECAFCLDVIYGERTR >gi|284795469|gb|ADDQ01000080.1| GENE 23 21854 - 22693 924 279 aa, chain - ## HITS:1 COG:BH0045 KEGG:ns NR:ns ## COG: BH0045 COG1774 # Protein_GI_number: 15612608 # Func_class: S Function unknown # Function: Uncharacterized homolog of PSP1 # Organism: Bacillus halodurans # 1 249 1 249 275 321 65.0 8e-88 MVEVVGVRFREAGHIYYFAPGKSEYIYNEKVLVESQQSKQLATVAIPKKTVDSDDLPEDL KPILNKATANDLEKEQKNLADAEAAKSIANEKIRAHDLKMKLVRVEYTFDRSKMIFYFTA DGRIDFRELVKDLAAIFRTRIELRQIGVRDEAKILGGIGPCGRQLCCSTFLGDFMPVSIK MAKDQGLSLNPVKISGLCGRLMCCLKYENDEYEAAKKELPDYGKEVITPDGKGKVVGLNL LSRIVKVRLHGREIAADYDYEEIKEATAKVAAEKGDQNG >gi|284795469|gb|ADDQ01000080.1| GENE 24 22810 - 23760 881 316 aa, chain - ## HITS:1 COG:BS_holB KEGG:ns NR:ns ## COG: BS_holB COG0470 # Protein_GI_number: 16077099 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication # Organism: Bacillus subtilis # 5 311 6 326 329 222 38.0 9e-58 MNEAQQLQQMQPLLYKQLQKSFEHGRLAHAYLFEGDTGTGKQEFGLWMAKHVFCTNLVNQ QPCNECHNCVRINENEHPDVLRIAPDGQTIKVNQIRELKAEFSKSGVETAKKVFLIQEAD KMSTGAANSLLKFLEEPEGQILAILETTSLSRILPTIQSRCQTLHFQPLVKKTLIDRLIK QGIGEKTATLLAELTNSFEKAVEISQDEWFNEAREIILQWFNYLKSNDLQAFIYVQKKMV KVFKEKEQQALSFDLLMVYYRQLLEESVATQQAKKITEEQAERLALILKARQKWTANVSW QNVCEQLVIQMIHPKS >gi|284795469|gb|ADDQ01000080.1| GENE 25 23762 - 24091 539 109 aa, chain - ## HITS:1 COG:lin2840 KEGG:ns NR:ns ## COG: lin2840 COG3870 # Protein_GI_number: 16801900 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 109 1 109 109 143 59.0 7e-35 MKIILAIVQDKDSNRLANEFIDANIRATKLSSTGGFLKAGNSTFIIGIDDERVDETLALI KETCQSRKQYVSTPVTLDITMDGQIPYPVEVEVGGATCFVLPVEGFHQY >gi|284795469|gb|ADDQ01000080.1| GENE 26 24111 - 24749 858 212 aa, chain - ## HITS:1 COG:BH0042 KEGG:ns NR:ns ## COG: BH0042 COG0125 # Protein_GI_number: 15612605 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate kinase # Organism: Bacillus halodurans # 2 207 3 207 210 218 56.0 7e-57 MQGIFITFEGPDGAGKTSVLKEVSERLAKESKRKIVTTREPGGIPIAEKIRTVILDPRND RMDERTEALLYAAARRQHLVEKILPALEAGHLVLCDRFVDSSLAYQGAGRRIGIAPIASI NAFATEGVSPDFTIYLDVDSDTGLRRIQENRTQQIDRLDSEGLEFHQRVRHEYLKLAEEN PQRIKKIDARMSLELVVEATYQAIIERYPENF >gi|284795469|gb|ADDQ01000080.1| GENE 27 24958 - 25554 568 198 aa, chain - ## HITS:1 COG:L0265 KEGG:ns NR:ns ## COG: L0265 COG0353 # Protein_GI_number: 15672322 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Lactococcus lactis # 1 198 1 198 198 300 75.0 2e-81 MNYPEPIAKLIESYMKLPGIGQKTATRLAFYTIDMKEEDANAFAKALISVKRDLHFCSIC GNITEEDPCEICQDKNRDRSIILVVEEPKDVMAMEKMREYQGLYHVLHGVLSPMEGTGPE DINIASLIKRLHDDEVKEVIIATNATTEGEATAMYLSRLIKPAGITVTRLAHGLSVGSDI EYADEITLLKAVEGRREI >gi|284795469|gb|ADDQ01000080.1| GENE 28 25730 - 26392 877 220 aa, chain - ## HITS:1 COG:L0228 KEGG:ns NR:ns ## COG: L0228 COG0819 # Protein_GI_number: 15673761 # Func_class: K Transcription # Function: Putative transcription activator # Organism: Lactococcus lactis # 1 218 1 218 218 222 55.0 5e-58 MTFTEQAKEQAQASWQGSFQHPFITELHEGTLSPTIFRYYLIQDHYYLKHFSQLYRLIAA QTQQPRLKKLLLTNAENLALGELAIRETFFEELAITKEEVAATPIAPTAYHYVSHMYRQL IEGTPKTAAASMLPCSWLYQEIGAQLVKQHSPEPLYQRWIETYAGEEAYQHVQEERQLLD QLYEESSPQEQAAMITAFVISSEMEYAFWEMAYTHETWIG >gi|284795469|gb|ADDQ01000080.1| GENE 29 26404 - 27057 522 217 aa, chain - ## HITS:1 COG:no KEGG:EF2768 NR:ns ## KEGG: EF2768 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: ABC transporters [PATH:efa02010] # 1 217 1 217 217 351 100.0 1e-95 MQIKQTNAAIYASLILILTFELSFSQSILANLAVFMGCVIFLIGQRKSRLLLWLFFLPLL PAIGTFWSIYLHGTSSQQAWLLFSRTYAFAGLGLAFAVGVDFEELLLLLEQKGLAPNFVY GILVVVHALPEVKREINDLKEASLLRGKTFHFWSPMLYVKTLLVAVSWRDKYTEAMSAHG YEEGATRSRKEHFVSAKVSLGLAILIIIFTNLFIFLT >gi|284795469|gb|ADDQ01000080.1| GENE 30 27048 - 28406 742 452 aa, chain - ## HITS:1 COG:SP0720 KEGG:ns NR:ns ## COG: SP0720 COG1122 # Protein_GI_number: 15900617 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Streptococcus pneumoniae TIGR4 # 4 452 3 447 461 310 40.0 3e-84 MNSIQLKAVSFSREQPLFEKTNLAIPQGTFSLLIGDSGSGKSTLLRLIAGFAPLDYQGEI LIEGMERRQLSTREKAQKIGMLFQNPSQQFTMKTLERELIFALENLGISPEEMNRKIQTA LQLVQTQTLFTRELATLSGGEKQKAALTVLLAMNPDILLLDEPFASIDPTSRKQFIQILA RLHQAGKTILVCDHDFNDYADVVDQVVTLKNGQFEKQPLTFIKTKPQTFQLTTSVVKQPM LQLKNFRLSQGKRVLLEEKEALFFKGITTLTGPNGAGKSTLLKAIVQRQKYQGKMFLAGR RLRASKKLYQHMTLAVQQANRQFVTLTLREELLFGQNMTAEKRRKREEALTFLGLKEKLE HSVFQLSEGQKKMVQLISLLSLDLDCLLLDEPFAGLDERACNYFVEWIKEKSAQQDFLIV THRLEPLSGVSNYRIELLQQQLIIWQEGTTCK >gi|284795469|gb|ADDQ01000080.1| GENE 31 28403 - 28966 717 187 aa, chain - ## HITS:1 COG:SP0719 KEGG:ns NR:ns ## COG: SP0719 COG4721 # Protein_GI_number: 15900616 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 1 177 2 178 186 148 52.0 5e-36 MKKWSLQQVVLLAFLAFLFGGVFMGAGFLYALLNAALLPLGLSPFANELLFGMWTMVAPI AAMLIPRAGSAVLAEVLAALAEMLYGSYFGPSVLISGVIQGLGSESGFFVTRYKRYDTLT LFYSAIGTTIFSYVYEYFKFGYGNYGLGMNIALISVRFVSICFFGIFLTKVILRMFQSAQ GLAVKAK >gi|284795469|gb|ADDQ01000080.1| GENE 32 29340 - 30125 735 261 aa, chain + ## HITS:1 COG:no KEGG:EF2771 NR:ns ## KEGG: EF2771 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 261 1 261 261 433 98.0 1e-120 MGKTLTGFHLKVIGVISMVFDHLLQFFSFLGVPGWFGWIGRIAAPIFLFESSEGFIHTSN RRKYMFRLLLGFWIMGILNGILNAYFSTGGLIINNIFGTLFLGTVYMQSMDYFKQKQIGK GLLWFIVPLLISALPLVVFSSPDILSNPAILIGFQLFNLIVPSLMMTEGGFLFVLLAVAF YLFHGKKWLQISAIGVVALISAASYNFQELFGVNHQWMMILAAIPIVLYNCEKGRGMRNF FYIFYPAHIAIFAIISFFMQR >gi|284795469|gb|ADDQ01000080.1| GENE 33 30289 - 31650 1204 453 aa, chain + ## HITS:1 COG:L184818 KEGG:ns NR:ns ## COG: L184818 COG0477 # Protein_GI_number: 15673330 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 2 451 3 449 454 325 48.0 1e-88 MEQKNVRLFPAVLATGIMSFAGVLIETAMNVTFPTLTKEFGVSTGTVQWVTTIYLLVISI MVPLSNYLLKTYSLRRLFIVANLFFLIGLAIDVYSPSFSILLLGRLFQGASTGIALPLMF HIILNFTPLEKRGTMMGVGTLTTSIAPAIGPTYGGILTSSLSWHAIFLFLIPVLLLSLFM GLSAIPEIPVKKNTTLDLVSLIGIALLFSGLLMFLSKIGTLFGWLSLLAAVIGFVIFYKR ATTAEQPLVRLTILKNPAFVLFLCGFLVCQFLLLGISFVLPNFVQIVLGKNAFVAGLVML PGATVGAILAPLSGRVLDQYGAKKPILFGLSLATIGWLALTILLEMPVLLGFVAGHVTYM IGLGFAYSNMMTTGMSLLEEKDFGDGNTLFNTLQQFSGAIATAIVATIINIAQDHADNFA QGTTMGSLISLIFLLTLLVIVLIACWNYFRKKA Prediction of potential genes in microbial genomes Time: Sun May 15 13:12:51 2011 Seq name: gi|284795468|gb|ADDQ01000081.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont184.1, whole genome shotgun sequence Length of sequence - 3986 bp Number of predicted genes - 4, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 18 - 602 516 ## COG1479 Uncharacterized conserved protein 2 1 Op 2 . - CDS 629 - 733 85 ## 3 1 Op 3 . - CDS 779 - 3823 2165 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 4 1 Op 4 . - CDS 3836 - 3928 118 ## Predicted protein(s) >gi|284795468|gb|ADDQ01000081.1| GENE 1 18 - 602 516 194 aa, chain - ## HITS:1 COG:NMA2230 KEGG:ns NR:ns ## COG: NMA2230 COG1479 # Protein_GI_number: 15795099 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Neisseria meningitidis Z2491 # 22 188 23 197 571 106 37.0 3e-23 MSTTIEVNKQSVKQFLETGKIKKFVIPEYQRPYAWTDEQIQVLFDDLAEYTANNNESTYF LGSIVAYENDHNEQEIIDGQQRITTLFLFLRAIYAKLENSCEKEALFLKSQIEPALWEQD DLTGEVKPDKILIMSRVMWDEGNEEFASILVSGEADVKSKSNYSKNYILIQHLLNEYATN EPLSFYRFISKKAI >gi|284795468|gb|ADDQ01000081.1| GENE 2 629 - 733 85 34 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFAFKKALKNLLHTKLSELCHISYVRIKEIDLFL >gi|284795468|gb|ADDQ01000081.1| GENE 3 779 - 3823 2165 1014 aa, chain - ## HITS:1 COG:CC0623 KEGG:ns NR:ns ## COG: CC0623 COG0610 # Protein_GI_number: 16124876 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Caulobacter vibrioides # 1 933 1 946 964 612 38.0 1e-175 MVENKEIRFEQDIETSLTTYGKWKKETFNESNFDPIIGLDCQKLLGFVQKTQPKQWVRHQ RNYNNDGEVKFLQRFNQEVETHGMLHVLRNGIKDRGVRFKVAYFKPASELNDERMEKYEA NSFTCTRQFAYSPNNHKTIDMVLSLNGIPLVALELKNQYTGQTVENAKLQFQKDHDPKEL VFRFNRRFLVYFAVDHTDVYMTTKLDGKKTYFLPFNQGSNGPGRVGGAGNPSNKDGYPTA YLWEKVLTRDNLMDIIQRFMNLEIKKEKQGDREVTKKTLIFPRYHQLDVVRKLVADVKSH GSGENYLIQHSAGSGKSNSIAWLAYHLASIHDQLNYPIFSSIIIVTDRTVLDRQLQNTIM NFDHQTGLVETIDDRKSSQDLKEAINDGRKIIITTLQKFPVIYQEVDQVEGRNFAVIVDE AHSSQTGNSAQKLKAALSDKSKSLEEYYELEGEVDDVLPDAEDELVQQLAAQGKHQNLSF FAFTATPKEKTLEMFGTKQPDGHFEPFHVYSMRQAIEEGFILDVLKNYMTYSTSYKIARE IEDNPELPKSEATRAIVRFQSLHPWAVAQKTAVMVEQFRAVTRTAIGGQAKAMVVTASRL HAVRYMKEFKKYIANKGYNDLNVLVAFSGLVVDGETEYTETKMNVTKSGENVRENQLKEA FHTDNFNILIVAEKYQTGFDEPLLHTMFVDKKLKGVKAVQTLSRLNRTMPGKKDTFILDF VNDVEDIEAAFQPFYEQTNLREEINVNLIYDTQSKLRKFNVYNQGDIERVMKLVKQAQKQ QNERLLGRISSMFKPIMDRYEEMNKDNQYQFRVTLRNFSKWYDYISQLDRLFDMELLEER IFTGYLLKFLPKETRENIDISDKVKLEYYKLRQDFSGEIHLVNKEGELVNPKTIDAGIKP PDERDSLEEIIHKINERFPNDFDEGDRVLVEILYRSFADNPDLKVVSMAKNNDAQMFEKS LFPDVFKDKVMEQYEKNNAAFEKMFGHDDRYFDLVYTLVARDLYKLLRTNNLYK >gi|284795468|gb|ADDQ01000081.1| GENE 4 3836 - 3928 118 30 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIDNKIAELMELESYKKALIYEYVTGKKEA Prediction of potential genes in microbial genomes Time: Sun May 15 13:12:58 2011 Seq name: gi|284795467|gb|ADDQ01000082.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont185.1, whole genome shotgun sequence Length of sequence - 1487 bp Number of predicted genes - 3, with homology - 2 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 33 - 164 169 ## SPH_1419 hypothetical protein 2 1 Op 2 . - CDS 169 - 906 413 ## COG0030 Dimethyladenosine transferase (rRNA methylation) - Prom 965 - 1024 6.3 3 2 Tu 1 . - CDS 1031 - 1114 170 ## - Prom 1165 - 1224 8.3 Predicted protein(s) >gi|284795467|gb|ADDQ01000082.1| GENE 1 33 - 164 169 43 aa, chain - ## HITS:1 COG:no KEGG:SPH_1419 NR:ns ## KEGG: SPH_1419 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_Hungary19A_6 # Pathway: not_defined # 1 43 21 63 63 68 90.0 5e-11 MSRFCKFGKLHVTKGNVDKLLGILLTASKELKRSLAPTGNLYR >gi|284795467|gb|ADDQ01000082.1| GENE 2 169 - 906 413 245 aa, chain - ## HITS:1 COG:NMB0066 KEGG:ns NR:ns ## COG: NMB0066 COG0030 # Protein_GI_number: 15676003 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Dimethyladenosine transferase (rRNA methylation) # Organism: Neisseria meningitidis MC58 # 3 242 4 243 244 224 50.0 8e-59 MNKNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELD SHLFNLSSEKLKLNIRVTLIHQDILQFQFPNKQRYKIVGNIPYHLSTQIIKKVVFESHAS DIYLIVEEGFYKRTLDIHRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTT DVPDKYWKLYTYFVSKWVNREYRQLFTKNQFHQAMKHAKVNNLSTVTYEQVLSIFNSYLL FNGRK >gi|284795467|gb|ADDQ01000082.1| GENE 3 1031 - 1114 170 27 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLVFQMRNVDKTSTVLKQTKNSDYADK Prediction of potential genes in microbial genomes Time: Sun May 15 13:13:04 2011 Seq name: gi|284795466|gb|ADDQ01000083.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont186.1, whole genome shotgun sequence Length of sequence - 572 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - TRNA 2 - 75 71.5 # Arg ACG 0 0 - TRNA 90 - 175 68.1 # Leu TAA 0 0 - TRNA 191 - 262 85.5 # Gly GCC 0 0 - TRNA 267 - 342 98.3 # Thr TGT 0 0 - TRNA 349 - 430 71.9 # Leu TAG 0 0 - TRNA 447 - 519 88.6 # Lys TTT 0 0 Prediction of potential genes in microbial genomes Time: Sun May 15 13:13:04 2011 Seq name: gi|284795465|gb|ADDQ01000084.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont187.1, whole genome shotgun sequence Length of sequence - 760 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 56 - 613 455 ## COG2963 Transposase and inactivated derivatives Predicted protein(s) >gi|284795465|gb|ADDQ01000084.1| GENE 1 56 - 613 455 185 aa, chain + ## HITS:1 COG:L138554 KEGG:ns NR:ns ## COG: L138554 COG2963 # Protein_GI_number: 15674130 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 180 1 176 185 109 39.0 2e-24 MAKYSFEFKLKLVHDYLSGQGGLRFLAKKYGFKDSSQISKWINAYKELGEEGLLRSRKNK NYSVQFKLDAIELYLTTELSYQEVANLLKMNNPSLIANWLRTYQKFGIEGLSKQKGRPPT MSKKKRNEPQPLPSERSQVEKLEKENRMLKIENAYLKELRRLRLEDEQKMNESHESFTAS EDTFD Prediction of potential genes in microbial genomes Time: Sun May 15 13:13:07 2011 Seq name: gi|284795464|gb|ADDQ01000085.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont188.1, whole genome shotgun sequence Length of sequence - 941 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + SSU_RRNA 1 - 941 100.0 # AY692453 [D:1..1570] # 16S ribosomal RNA # Enterococcus faecalis # Bacteria; Firmicutes; Lactobacillales; Enterococcaceae; Enterococcus. Prediction of potential genes in microbial genomes Time: Sun May 15 13:13:12 2011 Seq name: gi|284795463|gb|ADDQ01000086.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont189.1, whole genome shotgun sequence Length of sequence - 12697 bp Number of predicted genes - 15, with homology - 13 Number of transcription units - 11, operones - 3 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 228 155 ## BpOF4_21824 resolvase + Term 262 - 298 -0.5 2 2 Op 1 . - CDS 507 - 794 293 ## Btus_0802 hypothetical protein 3 2 Op 2 . - CDS 784 - 1113 482 ## gi|257880777|ref|ZP_05660430.1| conserved hypothetical protein - Prom 1183 - 1242 7.5 + Prom 1329 - 1388 7.7 4 3 Tu 1 . + CDS 1418 - 1747 269 ## COG0640 Predicted transcriptional regulators 5 4 Tu 1 . - CDS 2034 - 2519 320 ## COG4767 Glycopeptide antibiotics resistance protein - Prom 2552 - 2611 8.3 6 5 Tu 1 . - CDS 2672 - 3583 824 ## COG1876 D-alanyl-D-alanine carboxypeptidase - Prom 3659 - 3718 4.6 + Prom 3639 - 3698 5.3 7 6 Tu 1 . + CDS 3763 - 3927 107 ## + Term 4110 - 4165 7.1 8 7 Op 1 . - CDS 4011 - 4619 380 ## COG2173 D-alanyl-D-alanine dipeptidase 9 7 Op 2 . - CDS 4625 - 5656 285 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes 10 7 Op 3 . - CDS 5649 - 6617 305 ## COG1052 Lactate dehydrogenase and related dehydrogenases - Prom 6662 - 6721 3.1 + Prom 6861 - 6920 6.3 11 8 Tu 1 . + CDS 6949 - 8241 728 ## COG3464 Transposase and inactivated derivatives - Term 8061 - 8104 -0.1 12 9 Op 1 . - CDS 8234 - 8335 87 ## 13 9 Op 2 . - CDS 8339 - 9481 444 ## COG0642 Signal transduction histidine kinase - Prom 9515 - 9574 4.3 14 10 Tu 1 . - CDS 10380 - 10874 397 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs - Prom 10998 - 11057 6.2 + Prom 11524 - 11583 2.9 15 11 Tu 1 . + CDS 11623 - 12690 477 ## COG4644 Transposase and inactivated derivatives, TnpA family Predicted protein(s) >gi|284795463|gb|ADDQ01000086.1| GENE 1 1 - 228 155 75 aa, chain + ## HITS:1 COG:no KEGG:BpOF4_21824 NR:ns ## KEGG: BpOF4_21824 # Name: not_defined # Def: resolvase # Organism: B.pseudofirmus # Pathway: not_defined # 12 73 123 184 184 72 62.0 5e-12 ILYLKLCNRTVERTKEGLKSARARGRKGGRPRVNQKDVDRAVKLYKSQVYSVKEITEMTG ISKATLYRYLKDNRE >gi|284795463|gb|ADDQ01000086.1| GENE 2 507 - 794 293 95 aa, chain - ## HITS:1 COG:no KEGG:Btus_0802 NR:ns ## KEGG: Btus_0802 # Name: not_defined # Def: hypothetical protein # Organism: B.tusciae # Pathway: not_defined # 8 94 9 98 102 67 39.0 2e-10 MAYEILPSKHVIKYLKKLKEKTLKEQFLTIIYDEIAVRPHSGEQKTGDLSGIWAIGFKYA GTTYRVAYEIKDNAVIPILLCGTHENFYEQLKKIR >gi|284795463|gb|ADDQ01000086.1| GENE 3 784 - 1113 482 109 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|257880777|ref|ZP_05660430.1| ## NR: gi|257880777|ref|ZP_05660430.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] # 1 109 1 109 109 184 100.0 1e-45 MITKTRKQGNSIMLTVPKEFDVPNGVEVEAKLVENGILYEFVEPKKEFFDFSEDILADIL SEGYSKQEILKEFRNRKNALTSAFKSIAEDTVANSKPMTKEELAAEIGL >gi|284795463|gb|ADDQ01000086.1| GENE 4 1418 - 1747 269 109 aa, chain + ## HITS:1 COG:pli0060 KEGG:ns NR:ns ## COG: pli0060 COG0640 # Protein_GI_number: 18450342 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 3 108 4 109 119 90 46.0 8e-19 MKKVCQVTVVHKEKVNGIKNKLDQKDFSNLLVLGKCFSDFSRIKIFYALETYKEMCVCDL AEILTASVATTSHHLRFLKKHGMAKSRQDGKVVYYSLANEDILSAIRVF >gi|284795463|gb|ADDQ01000086.1| GENE 5 2034 - 2519 320 161 aa, chain - ## HITS:1 COG:L98876 KEGG:ns NR:ns ## COG: L98876 COG4767 # Protein_GI_number: 15673074 # Func_class: V Defense mechanisms # Function: Glycopeptide antibiotics resistance protein # Organism: Lactococcus lactis # 1 138 1 139 165 95 44.0 2e-20 MGKILSRGLLALYLVTLIWLVLFKLQYNILSVFNYHQRSLNLTPFTATGNFREMIDNVII FIPFGLLLNVNFKEIGFLPKFAFVLVLSLTFEIIQFIFAIGATDITDVITNTVGGFLGLK LYGLSNKHMNQKKLDRVIIFVGILLLVLLLVYRTHLRINYV >gi|284795463|gb|ADDQ01000086.1| GENE 6 2672 - 3583 824 303 aa, chain - ## HITS:1 COG:BH1810 KEGG:ns NR:ns ## COG: BH1810 COG1876 # Protein_GI_number: 15614373 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Bacillus halodurans # 1 292 1 288 290 336 57.0 3e-92 MKKLFFLLLLLFLIYLGYDYVNEALFSQEKVEFQNYDQNPKEHLENSGTSENTQEKTITE EQVYQGNLLLINSKYPVRQESVKSDIVNLSKHDELINGYGLLDSNIYMSKEIAQKFSEMV NDAVKGGVSHFIINSGYRDFDEQSVLYQEMGAEYALPAGYSEHNSGLSLDVGSSLTKMER APEGKWIEENAWKYGFILRYPEDKTELTGIQYELWHIRYVGLPHSAIMKEKNFVLEEYMD YLKEEKTISVSVNGEKYEIFYYPVTKNTTIHVPTNLRYEISGNNIDGVIVTVFPGSTHTN SRR >gi|284795463|gb|ADDQ01000086.1| GENE 7 3763 - 3927 107 54 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLNLTRLNCLLTMGGVKYHPSMRSVLLSGYLAAAHADNDRNIALPYIFNTIYYI >gi|284795463|gb|ADDQ01000086.1| GENE 8 4011 - 4619 380 202 aa, chain - ## HITS:1 COG:mlr1665 KEGG:ns NR:ns ## COG: mlr1665 COG2173 # Protein_GI_number: 13471635 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine dipeptidase # Organism: Mesorhizobium loti # 4 201 33 240 243 139 35.0 4e-33 MEIGFTFLDEIVHGVRWDAKYATWDNFTGKPVDGYEVNRIVGTYELAESLLKAKELAATQ GYGLLLWDGYRPNRAVNCFMQWAAQPENNLTKESYYPNIDRTEMISKGYVASKSSHSRGS AIDLTLYRLDTGELVPMGSRFDFMDERSHHAANGISCNEAQNRRRLRSIMENSGFEAYSL EWWHYVLRDEPYPNSYFDFPVK >gi|284795463|gb|ADDQ01000086.1| GENE 9 4625 - 5656 285 343 aa, chain - ## HITS:1 COG:ECs0431 KEGG:ns NR:ns ## COG: ECs0431 COG1181 # Protein_GI_number: 15829685 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Escherichia coli O157:H7 # 1 342 1 352 364 231 36.0 2e-60 MNRIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWE NDNCYSAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFV GCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFG VKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALAVGEVDQIRLQYGI FRIHQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCRGLARVDMFLQDNGR IVLNEVNTLPGFTSYSRYPRMMAAAGIALPELIDRLIVLALKG >gi|284795463|gb|ADDQ01000086.1| GENE 10 5649 - 6617 305 322 aa, chain - ## HITS:1 COG:CAC1543 KEGG:ns NR:ns ## COG: CAC1543 COG1052 # Protein_GI_number: 15894821 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Clostridium acetobutylicum # 6 321 3 321 326 264 42.0 1e-70 MNNIGITVYGCEQDEADAFHALSPRFGVMATIINANVSESNAKSAPFNQCISVGHKSEIS ASILLALKRAGVKYISTRSIGCNHIDTTAAKRMGITVDNVAYSPDSVADYTMMLILMAVR NVKSIVRSVEKHDFRLDSDRGKVLSDMTVGVVGTGQIGKAVIERLRGFGCKVLAYSRSRS IEVNYVPFDELLQNSDIVTLHVPLNTDTHYIISHEQIQRMKQGAFLINTGRGPLVDTYEL VKALENGKLGGAALDVLEGEEEFFYSDCTQKPIDNQFLLKLQRMPNVIITPHTAYYTEQA LRDTVEKTIKNCLDFERRQEHE >gi|284795463|gb|ADDQ01000086.1| GENE 11 6949 - 8241 728 430 aa, chain + ## HITS:1 COG:FN0599 KEGG:ns NR:ns ## COG: FN0599 COG3464 # Protein_GI_number: 19703934 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 1 424 4 422 428 253 34.0 5e-67 MSYTHLIKETLDILDLSVTFNENCLTKEKYKGQICHIYRGNLIYTAQECIHCKHQIASDI VRWGTTTVRLLMNDVSEYRTYLELKKQRFKCKACQRTFVADTSVAKKHCFISEKVRWSVV TRLKKNTSMTEIAAQKNLSVSSVYRIMKRFYRPLNPFRTPLPKVLCFDEFKSVRGVSGAM SFIMMDGQTQRLLDIVENRQLPFLKRYFSHFSREIREAVEWIVIDMYAPYVSLVKKLFPK AQLIIDRFHIVQHIGRTFRNHRIKETNQLLKSKEQKHYQLGKQLKRYWKLLQKDERKLDY TRRLWRPGFKAHLTETDIVDRLLKGSPALRVGYQLYQDFLYAVKERDYVSFEELLTNNIM LPEGYQTTLRTFQKFLPQIKNALQQSYSNGPLECLNNHIKVLKRNAYGFRSFYNFKLRIM IRHGNALIFN >gi|284795463|gb|ADDQ01000086.1| GENE 12 8234 - 8335 87 33 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYIILALCQMMLVKRNLRIIGDQVDQFLLIFFS >gi|284795463|gb|ADDQ01000086.1| GENE 13 8339 - 9481 444 380 aa, chain - ## HITS:1 COG:BH1809 KEGG:ns NR:ns ## COG: BH1809 COG0642 # Protein_GI_number: 15614372 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus halodurans # 73 369 46 346 351 179 37.0 6e-45 MKNKKNDYSKLERKLYMYIVAIVVVAIVFVLYIRSMIRGKLGDWILSILENKYDLNHLDA MKLYQYSIRNNIDIFIYVAIVISILILCRVMLSKFAKYFDEINTGIDVLIQNEDKQIELS AEMDVMEQKLNTLKRTLEKREQDAKLAEQRKNDVVMYLAHDIKTPLTSIIGYLSLLDEAP DMPVDQKAKYVHITLDKAYRLEQLIDEFFEITRYNLQTITLTKTHIDLYYMLVQMTDEFY PQLSAHGKQAVIHAPEDLTVSGDPDKLARVFNNILKNAAAYSEDNSIIDITAGLSGDVVS IEFKNTGSIPKDKLAAIFEKFYRLDNARSSDTGGAGLGLAIAKEIIVQHGGQIYAESNDN YTTFRVELPAMPDLVDKRRS >gi|284795463|gb|ADDQ01000086.1| GENE 14 10380 - 10874 397 164 aa, chain - ## HITS:1 COG:BMEI0901 KEGG:ns NR:ns ## COG: BMEI0901 COG1961 # Protein_GI_number: 17987184 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Brucella melitensis # 2 161 45 197 205 83 33.0 2e-16 MDIIYEEKVSGATKDREQLQKVLDDLQEDDIIYVTDLTRITRSTQDLFELIDNIRDKKAS LKSLKDTWLDLSEDNPYSQFLITVMAGVNQLERDLIRMRQREGIELAKKEGKFKGRLKKY HKNHAGMNYAVKLYKEGNMTVNQICEITNVSRASLYRKLSEVNN >gi|284795463|gb|ADDQ01000086.1| GENE 15 11623 - 12690 477 355 aa, chain + ## HITS:1 COG:CAP0093 KEGG:ns NR:ns ## COG: CAP0093 COG4644 # Protein_GI_number: 15004797 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, TnpA family # Organism: Clostridium acetobutylicum # 148 347 2 203 673 192 44.0 1e-48 MAEKKLFNTVSKSLTNEQKEKLEGIITSQHPSESNKTILGWLKEPPGHPSPETFLKIIER LEYIRGMDLETVQISHLHRNRLLQLSRLGSRYEPYAFRDFQENKRYSILTIYLLQLTQEL TDKAFEIHDRQILSLLSKGRKAQEEIQKQNGKKLNEKVIHFTNIGQALIKAREEKLDVFK VLESVIEWNTFVSSVEEAQELARPADYDYLDLLQKRFYSLRKYTPTLLRVLEFHSTKANE PLLQAVEIIRGMNESGKRKVPDDSPVDFISKRWKRHLYEDDGTTINRHYYEMAVLTELRE HVRAGDVSIVGSRQYRDFEEYLFSEDTWNQSKGNTRLSVSLSFEDYITEGSVAKF Prediction of potential genes in microbial genomes Time: Sun May 15 13:13:30 2011 Seq name: gi|284795462|gb|ADDQ01000087.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont190.1, whole genome shotgun sequence Length of sequence - 1971 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 3, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 17 - 712 504 ## gi|69243927|ref|ZP_00602505.1| hypothetical protein EfaeDRAFT_2615 2 2 Op 1 . + CDS 877 - 1077 98 ## gi|258617184|ref|ZP_05714954.1| hypothetical protein EfaeD_15963 3 2 Op 2 . + CDS 1093 - 1272 178 ## gi|257895044|ref|ZP_05674697.1| conserved hypothetical protein + Term 1346 - 1384 -0.2 + Prom 1318 - 1377 9.8 4 3 Op 1 6/0.000 + CDS 1403 - 1672 409 ## COG2161 Antitoxin of toxin-antitoxin stability system 5 3 Op 2 . + CDS 1665 - 1922 190 ## COG4115 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|284795462|gb|ADDQ01000087.1| GENE 1 17 - 712 504 231 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|69243927|ref|ZP_00602505.1| ## NR: gi|69243927|ref|ZP_00602505.1| hypothetical protein EfaeDRAFT_2615 [Enterococcus faecium DO] # 1 231 1 231 231 360 100.0 3e-98 MQQNPTEDVSHFLTNKEHLNEVIRRIQKDFSCMEEMKYFIQRVEEQLYLESETSQTKVTV SHNRLDVYKRRPETVKKGTELLRLETEKYIMNVYLERSELVENFVSYTICRKHYYSESEY YSIFESMELMEEEMEELNSKDATIDDYYLVFTRFLTCGTESIVLMGMDYELAVPEAFLRE YVEEVDNPGDDWYTTLTDFLDTYTYDDTEEIQNELDRKRMPYQRFERKKRQ >gi|284795462|gb|ADDQ01000087.1| GENE 2 877 - 1077 98 66 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|258617184|ref|ZP_05714954.1| ## NR: gi|258617184|ref|ZP_05714954.1| hypothetical protein EfaeD_15963 [Enterococcus faecium DO] # 1 66 1 66 66 71 100.0 1e-11 MNKIIPLLLVLFVGEILMRHAAAVHLNFVVFLAILVFCLIFWRFVLALVSLLFKMIAAIF FIGLFR >gi|284795462|gb|ADDQ01000087.1| GENE 3 1093 - 1272 178 59 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|257895044|ref|ZP_05674697.1| ## NR: gi|257895044|ref|ZP_05674697.1| conserved hypothetical protein [Enterococcus faecium 1,231,408] # 1 59 1 59 59 92 100.0 6e-18 MPIAIGNKRLPVTLDEKRQKELQQLKQKYGKSESRIMCIALDLLIAQEKAGFEVPALKK >gi|284795462|gb|ADDQ01000087.1| GENE 4 1403 - 1672 409 89 aa, chain + ## HITS:1 COG:SP1741 KEGG:ns NR:ns ## COG: SP1741 COG2161 # Protein_GI_number: 15901573 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Antitoxin of toxin-antitoxin stability system # Organism: Streptococcus pneumoniae TIGR4 # 1 84 1 84 84 65 45.0 2e-11 MEAVAYSNFRQNLRSYMKQVNEDAETLIVTSKDVEDTVVVLSKRDYDSMQETLRTLSNNY VMEKIRRGDEQFSKGAFKTHDLIEVESDD >gi|284795462|gb|ADDQ01000087.1| GENE 5 1665 - 1922 190 85 aa, chain + ## HITS:1 COG:SP1740 KEGG:ns NR:ns ## COG: SP1740 COG4115 # Protein_GI_number: 15901572 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 85 1 84 84 94 55.0 5e-20 MIKAWSDDAWDDYLYWHEQGNKSNIKKINKLIKDIDRSPFAGLGKPEPLKHDLSGKWSRR ITDEHRLIYRVENETIFIYSAKDHY Prediction of potential genes in microbial genomes Time: Sun May 15 13:13:50 2011 Seq name: gi|284795461|gb|ADDQ01000088.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont191.1, whole genome shotgun sequence Length of sequence - 3971 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 4, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 159 84 ## gi|293384663|ref|ZP_06630520.1| transcriptional regulator, MerR family - Prom 224 - 283 3.7 + Prom 238 - 297 9.4 2 2 Op 1 . + CDS 325 - 522 162 ## CLK_0105 transposase and inactivated derivatives 3 2 Op 2 . + CDS 512 - 1126 253 ## COG1396 Predicted transcriptional regulators + Term 1151 - 1189 5.1 + Prom 1207 - 1266 4.1 4 3 Tu 1 . + CDS 1309 - 2226 222 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 + Term 2288 - 2316 -0.1 5 4 Op 1 . + CDS 2672 - 2968 233 ## gi|227518254|ref|ZP_03948303.1| bacitracin ABC ATP binding cassette transporter, membrane protein 6 4 Op 2 . + CDS 2968 - 3798 428 ## COG1968 Uncharacterized bacitracin resistance protein + Term 3885 - 3931 14.3 Predicted protein(s) >gi|284795461|gb|ADDQ01000088.1| GENE 1 3 - 159 84 52 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293384663|ref|ZP_06630520.1| ## NR: gi|293384663|ref|ZP_06630520.1| transcriptional regulator, MerR family [Enterococcus faecalis R712] # 1 52 1 52 53 99 100.0 8e-20 MYQDERKLDFKPLGIAIKKAREAKGWTQEYLAQLVDLTPRSIMGSVAKFPIS >gi|284795461|gb|ADDQ01000088.1| GENE 2 325 - 522 162 65 aa, chain + ## HITS:1 COG:no KEGG:CLK_0105 NR:ns ## KEGG: CLK_0105 # Name: not_defined # Def: transposase and inactivated derivatives # Organism: C.botulinum_A3_LochMaree # Pathway: not_defined # 1 61 119 178 182 89 65.0 4e-17 MDYISVKAASEKWGISERRIQKLCEENRIDGTEKFGRAWMIPKDAEKPVDGRMKTRNKQE ENHGI >gi|284795461|gb|ADDQ01000088.1| GENE 3 512 - 1126 253 204 aa, chain + ## HITS:1 COG:L12334 KEGG:ns NR:ns ## COG: L12334 COG1396 # Protein_GI_number: 15671989 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 1 99 1 98 107 66 33.0 3e-11 MEFNEKLQQLRTGKNLTQEQLAEQLYVSRTAISKWESGKGYPNIESLKCISKFFFVTIDE LLSGEELITLAETENRSNLKKIYNYIYGILDMMAVAFIFLPLYGNSVGGYVYAVNLLSFT ATTPFNLAVYWSAFAALIVIGIAKIILTHLDKETWGGIATKCSLGLTALAICFLAAAREP YITALMFLLFVAKIVVWIKQNGTK >gi|284795461|gb|ADDQ01000088.1| GENE 4 1309 - 2226 222 305 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 299 1 301 305 90 26 3e-18 MDYIIETENLTKRYGTATVVDKVNLHVPTGKIYGLLGRNGAGKTTAMKMMLQLALPTDGT VRLFGTNYKENIHTLYSKVGSIIETPGFYSNLTGYENLQILAKLRGGVSKSGVEKALEVV GLHKEKRKVFSDYSLGMKQRLGIAAAIMHEPELLILDEPINGLDPIGIVEIRSLLSELSH NHGITIFISSHVLSEIEQIADIIGVMHEGHLVEEVNISELHKRNRKYIQFDLSDSEIAGK ILESHYHMTDFTVQDGTVRIYDFSQSVGEINREFARNGLLVTRIDDSEENLEDYFSKLIG GGGIA >gi|284795461|gb|ADDQ01000088.1| GENE 5 2672 - 2968 233 98 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227518254|ref|ZP_03948303.1| ## NR: gi|227518254|ref|ZP_03948303.1| bacitracin ABC ATP binding cassette transporter, membrane protein [Enterococcus faecalis TX0104] # 1 98 152 249 249 167 98.0 1e-40 MFGSILMFLTVSPFVFVAMKTKGFVAPMIGSAVIVMGSAALSNQEWGALYPWTATYFLVQ GKLQSTGYPTLLSVSIIILVSAVGFLMTFHHFKKEDLK >gi|284795461|gb|ADDQ01000088.1| GENE 6 2968 - 3798 428 276 aa, chain + ## HITS:1 COG:CAC0501 KEGG:ns NR:ns ## COG: CAC0501 COG1968 # Protein_GI_number: 15893792 # Func_class: V Defense mechanisms # Function: Uncharacterized bacitracin resistance protein # Organism: Clostridium acetobutylicum # 3 272 1 269 274 272 60.0 6e-73 MVLDFIEILKVIFLGIVEGITEWLPISSTGHMILADKFITLNMSEAFKEMFFVVIQLGAI LAVVVMFWNKMFPFQLKDKSQPLVKKDTFSLWFKVAVACIPSGIMGILFDDYLDAYLQTP IVISIMLIFYGLLFILIENWNKKRTPTTMALSDISYKTAILIGAFQVLSLIPGTSRSGAT IIGALLIGVSRVAAAEFTFFLAVPTMLGASAFKLLKFGFDFTSAELLALVLGMAVAFAVS VLVIKFLMNFIKKHDFKVFGWYRIVLGILVVLITVM Prediction of potential genes in microbial genomes Time: Sun May 15 13:14:03 2011 Seq name: gi|284795460|gb|ADDQ01000089.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont193.1, whole genome shotgun sequence Length of sequence - 5952 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 4, operones - 2 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 62 - 220 144 ## gi|227518259|ref|ZP_03948308.1| hypothetical protein HMPREF0348_1242 2 1 Op 2 . + CDS 255 - 935 594 ## COG3316 Transposase and inactivated derivatives 3 1 Op 3 . + CDS 976 - 1905 1088 ## COG1705 Muramidase (flagellum-specific) + Term 1907 - 1962 12.3 + Prom 2191 - 2250 8.6 4 2 Tu 1 . + CDS 2385 - 3089 941 ## gi|227518262|ref|ZP_03948311.1| hypothetical protein HMPREF0348_1245 + Term 3104 - 3148 11.1 + Prom 3195 - 3254 9.7 5 3 Op 1 . + CDS 3466 - 4494 1069 ## EF2253 hypothetical protein 6 3 Op 2 . + CDS 4497 - 4877 518 ## gi|227518264|ref|ZP_03948313.1| hypothetical protein HMPREF0348_1247 7 3 Op 3 . + CDS 4877 - 5086 239 ## gi|227518265|ref|ZP_03948314.1| hypothetical protein HMPREF0348_1248 + Prom 5091 - 5150 3.6 8 4 Tu 1 . + CDS 5209 - 5950 656 ## gi|293384677|ref|ZP_06630533.1| hypothetical protein HMPREF9377_02515 Predicted protein(s) >gi|284795460|gb|ADDQ01000089.1| GENE 1 62 - 220 144 52 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227518259|ref|ZP_03948308.1| ## NR: gi|227518259|ref|ZP_03948308.1| hypothetical protein HMPREF0348_1242 [Enterococcus faecalis TX0104] # 1 52 11 62 62 98 100.0 1e-19 MKDGVYLGEDVDQAHAQGLIDQLNAIHYPKPQTNPIKIKGSVAKFFNKVNLV >gi|284795460|gb|ADDQ01000089.1| GENE 2 255 - 935 594 226 aa, chain + ## HITS:1 COG:pli0028 KEGG:ns NR:ns ## COG: pli0028 COG3316 # Protein_GI_number: 18450311 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Listeria innocua # 1 226 1 226 226 389 89.0 1e-108 MNHFKGKQFQKDVIIVAVGYYLRYNLSYREVQEILYDRGIEVCHTTIYRWVQEYGRVLYQ IWKKKNRQSFYSWKMDETYIKIKGKWHYLYRAIDADGLTLDIWLRKKRNAQAAYAFLKRL FKQFREPKVLVTDKAPSIACAFKKLQNHGFYQQTEHRTVKYLNNLIEQDHRPIKRRNKFY QSLRTASTTIKGMEAIRGLYKKSRKEGTLFGFSVCIEIKVLLGIPA >gi|284795460|gb|ADDQ01000089.1| GENE 3 976 - 1905 1088 309 aa, chain + ## HITS:1 COG:lin2838_1 KEGG:ns NR:ns ## COG: lin2838_1 COG1705 # Protein_GI_number: 16801898 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Listeria innocua # 17 174 152 309 340 157 53.0 3e-38 MQQNPYDGDFYFEKDESVEQFIQKIGEAARKVGQENDLYASVMIAQAILESASGQSLLSK APNYNLFGIKGTYNDRGISFATQEDLGNGLYYATQATFKQYPNYDESLKDYAKLLKEGIS GDANFYEGVWKNNAKTYQEATHYLTGRYATDSQYDKKLNGLIETYELTMYDRSKATVEMS NSDFPAYNGENYDTFNSYAWGNCTQYVYNRITQLGKHIDLTMGNGKDWGSTGQVRGYEVS RTPQAGTAVSFPAGVLGADPLYGHVAFVEKVNQDGSIFISEMNVQGLNIVSTRTISANQT SLLSYITPK >gi|284795460|gb|ADDQ01000089.1| GENE 4 2385 - 3089 941 234 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227518262|ref|ZP_03948311.1| ## NR: gi|227518262|ref|ZP_03948311.1| hypothetical protein HMPREF0348_1245 [Enterococcus faecalis TX0104] # 1 234 1 234 234 356 100.0 6e-97 MKSIRLLGATLLASTTLLGAASAFAAPSDPSTPAPASAQTPVSAELTVNQTPTQPVPPLV PEGGTDTGTGITGLFGIAYAPNALQGSAQLKESGETEVILTSTGNTTKKYNVGVQDKTRA KDRNWTLSAQLEWTGANKDYMNGATIKATGGNVQLNEAGNLSALADAEVTTAAADLTIGN QAPVEIMAAQKGKTINGVYNYQFQEPKLVIPQSQNVTAGSYSGNINWTLSNVVE >gi|284795460|gb|ADDQ01000089.1| GENE 5 3466 - 4494 1069 342 aa, chain + ## HITS:1 COG:no KEGG:EF2253 NR:ns ## KEGG: EF2253 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 25 339 28 343 349 170 31.0 9e-41 MKKWALYSMCILSLFAGGYHAQAEESDSSQLAGGYTIEGIPSDHQLDKTVSYFYLKENPG EKDQVKVKLTNDSDKEKTLEVKLTNANTNSNGAVDYTGKIKDHASLKDPLTSMAKVSQKE VQVPAKSSVETAIDIQMPEKTMSGVVVGGIVVSEKQTVEKEKQALSLGNIYTYTIGLVLT NEDTVEPKKNNSVELDTVGAKLSDGKKIVQADILNPNPYIFPNATVKGEIKPKASGEVIK KEEKKNVNIAPYSVYPFQFDWKKEELKPGKYVFVGSVDAGGKTWKFEREFEITDEKAKEI NTKSVFKVYIPKWVTYGVYALVIISVGGTIYIVVRRKQREAE >gi|284795460|gb|ADDQ01000089.1| GENE 6 4497 - 4877 518 126 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227518264|ref|ZP_03948313.1| ## NR: gi|227518264|ref|ZP_03948313.1| hypothetical protein HMPREF0348_1247 [Enterococcus faecalis TX0104] # 1 126 1 126 126 212 100.0 5e-54 MKKWLIGGLLCSTLLMGGVAHAAEQPSTDVAQTGVTVQLARTIGPDKLPGGEPLGGAGGS NTTIHTDSNANANAQVHLAIGGSTAGRLPHTNGEKNLMYSILGGVFLGCSLCLLLIRKNK EKEVEE >gi|284795460|gb|ADDQ01000089.1| GENE 7 4877 - 5086 239 69 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227518265|ref|ZP_03948314.1| ## NR: gi|227518265|ref|ZP_03948314.1| hypothetical protein HMPREF0348_1248 [Enterococcus faecalis TX0104] # 1 69 1 69 69 75 100.0 7e-13 MYSLPICLLVVGILLLIVNSLLFFNDYKATLTNSMKKSRLYVNGIVLLSSVGVIVLSTVY IFMINSQLS >gi|284795460|gb|ADDQ01000089.1| GENE 8 5209 - 5950 656 247 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293384677|ref|ZP_06630533.1| ## NR: gi|293384677|ref|ZP_06630533.1| hypothetical protein HMPREF9377_02515 [Enterococcus faecalis R712] # 1 247 1 247 248 355 100.0 2e-96 MKRKKYAYLFATTVLLANVATTPITVIAETMQENSSSEVAEKAEKQEKNQEEPLNSSEQD TSESDNETAEYTNNTQQQEDSSTPIEQAPSQPNNNESTQDNTKIESDLEKEIVETSDDLK EAKVQDWKVEENDDYVLLVRYEGDNKNLVVPNEINGKPTKLKGINEGVIPNLKSLEGFTV RPSTTGQMVGLDNTSLVGAFSGSTIVSINLSGLDTSQVTDMTNMFSSCSKLTSLDLSSFN TSQVTSM Prediction of potential genes in microbial genomes Time: Sun May 15 13:14:55 2011 Seq name: gi|284795459|gb|ADDQ01000090.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont195.1, whole genome shotgun sequence Length of sequence - 31387 bp Number of predicted genes - 30, with homology - 29 Number of transcription units - 10, operones - 8 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 29 - 379 419 ## COG4898 Uncharacterized protein conserved in bacteria 2 1 Op 2 3/0.000 - CDS 453 - 1457 1255 ## COG2222 Predicted phosphosugar isomerases 3 1 Op 3 3/0.000 - CDS 1451 - 2527 877 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains 4 1 Op 4 13/0.000 - CDS 2538 - 3368 907 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 5 1 Op 5 13/0.000 - CDS 3352 - 4143 908 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 6 1 Op 6 9/0.000 - CDS 4159 - 4629 565 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 7 1 Op 7 3/0.000 - CDS 4641 - 5060 457 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA - Term 5084 - 5118 3.2 8 1 Op 8 . - CDS 5132 - 7903 2285 ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain - Prom 7950 - 8009 9.5 - Term 8241 - 8286 4.3 9 2 Op 1 . - CDS 8474 - 9841 1128 ## COG0232 dGTP triphosphohydrolase 10 2 Op 2 . - CDS 9858 - 10682 677 ## EF1959 hypothetical protein - Prom 10778 - 10837 11.7 - Term 10971 - 11010 3.2 11 3 Tu 1 . - CDS 11036 - 12334 1709 ## COG0148 Enolase - Prom 12382 - 12441 5.1 12 4 Op 1 13/0.000 - CDS 12466 - 13221 910 ## COG0149 Triosephosphate isomerase 13 4 Op 2 26/0.000 - CDS 13270 - 14463 1473 ## COG0126 3-phosphoglycerate kinase - Prom 14487 - 14546 3.1 - Term 14506 - 14542 6.3 14 4 Op 3 5/0.000 - CDS 14590 - 15591 1347 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 15 4 Op 4 . - CDS 15631 - 16668 984 ## COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain - Prom 16801 - 16860 7.2 - Term 17029 - 17076 11.0 16 5 Tu 1 . - CDS 17088 - 17966 859 ## COG1284 Uncharacterized conserved protein - Prom 18008 - 18067 6.2 17 6 Op 1 2/0.000 - CDS 18109 - 18678 798 ## COG4475 Uncharacterized protein conserved in bacteria 18 6 Op 2 3/0.000 - CDS 18675 - 19181 676 ## COG4720 Predicted membrane protein 19 6 Op 3 . - CDS 19165 - 19980 733 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase - Prom 20001 - 20060 5.1 - Term 20095 - 20136 8.1 20 7 Op 1 13/0.000 - CDS 20155 - 21924 2299 ## COG0173 Aspartyl-tRNA synthetase 21 7 Op 2 . - CDS 21942 - 23243 1576 ## COG0124 Histidyl-tRNA synthetase - Prom 23343 - 23402 4.4 22 8 Op 1 7/0.000 - CDS 23601 - 24047 537 ## COG1490 D-Tyr-tRNAtyr deacylase 23 8 Op 2 . - CDS 24071 - 26284 2554 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases - Prom 26339 - 26398 8.0 - Term 26456 - 26488 -0.0 24 9 Op 1 9/0.000 - CDS 26499 - 27251 725 ## COG1385 Uncharacterized protein conserved in bacteria 25 9 Op 2 . - CDS 27253 - 28200 1600 ## PROTEIN SUPPORTED gi|227519318|ref|ZP_03949367.1| ribosomal protein L11 methyltransferase 26 9 Op 3 . - CDS 28216 - 28701 714 ## EF1977 hypothetical protein 27 9 Op 4 . - CDS 28658 - 29335 895 ## COG2094 3-methyladenine DNA glycosylase - Prom 29434 - 29493 6.8 + Prom 29382 - 29441 4.2 28 10 Op 1 . + CDS 29464 - 30741 1457 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase + Prom 30746 - 30805 1.7 29 10 Op 2 . + CDS 30825 - 31028 93 ## + Term 31030 - 31061 1.1 30 10 Op 3 . + CDS 31069 - 31347 287 ## EF1980 hypothetical protein Predicted protein(s) >gi|284795459|gb|ADDQ01000090.1| GENE 1 29 - 379 419 116 aa, chain - ## HITS:1 COG:lin0147 KEGG:ns NR:ns ## COG: lin0147 COG4898 # Protein_GI_number: 16799224 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 115 1 115 116 159 72.0 2e-39 MTKPKIYTMTFASVYPLYIQKAERKNQTQAEVDEIIYWLTGYDEKGLQQQLAQKVTMETF FEEAPNFNENAQLIKGVICGYRVEEIEDPLMQKIRYLDKLIDELAKGKAMEKILRT >gi|284795459|gb|ADDQ01000090.1| GENE 2 453 - 1457 1255 334 aa, chain - ## HITS:1 COG:lin2106 KEGG:ns NR:ns ## COG: lin2106 COG2222 # Protein_GI_number: 16801172 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted phosphosugar isomerases # Organism: Listeria innocua # 1 334 1 331 331 407 56.0 1e-113 MLKFNEEQQIKDIRGALALRSDVEKVVDQVWTKGFDAVYYLGIGGTYASAMQAVTYANGK SNLPIYVQHAAEYYTTGNKRLTEKSFVILSSVTGTTQEVVQAVQEIKKVGATLFGFIDAK DSLLADLCDYVVTYPAPGTEQIKFFMVADRLMQKNNEFTDYENYYQELEEYLPTGLAEAE KSADAFGLAFAEKHRHDSIHYFIGAGNQWGAVYSYAMCYWEEQSWLRSKSIHAAEFLHGT LEIVDETTPVTLFIGEDEQRPLAERVAKLLPKICANYTIIDSKAYELPGISEKYRGRVVS FLLMHAVTQRIDAHVEKLNCHPLEIRRYYRQFDY >gi|284795459|gb|ADDQ01000090.1| GENE 3 1451 - 2527 877 358 aa, chain - ## HITS:1 COG:lin0034 KEGG:ns NR:ns ## COG: lin0034 COG0449 # Protein_GI_number: 16799113 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Listeria innocua # 3 348 4 354 361 298 45.0 2e-80 MKTMLDYINEEQAALTQILNQFQLTDTDVSKVTHCLILATGSSHNACQAAKVYLEEVAPI YVEIQEPFNFAHYGKVDDRFDLVVAVSQSGKSASTIDAIAKIKNQTSVKTVALTSDVTSP ITEVVDEVLDLKMGLETVGFVTKGYTATLLNLFLFGLKLGYQKHQLTKAEVEEELAKLAK AIQEIDSVIYKTEQFWQKTKKELTEGTRFIAIGYGPNIGTAKEFETKFTETVRLPSQGFE VEAYMHGPYLEADTTHLLFFIENQSPIQARSQALKNYLASYVGQCYTITTRSTRASNTLD LASDVEEKISPLLLVIPFQYLAYQVATSKGIDLSQRIFDDFDCVLKSKIAKKEGNQSC >gi|284795459|gb|ADDQ01000090.1| GENE 4 2538 - 3368 907 276 aa, chain - ## HITS:1 COG:STM4538 KEGG:ns NR:ns ## COG: STM4538 COG3716 # Protein_GI_number: 16767782 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Salmonella typhimurium LT2 # 6 276 9 278 278 372 69.0 1e-103 MTKTSKTKTENLITKKELNQVFLRSFQMEFSWNYERQMNMAYVYAMIPILKKLYPQKEEM AAALKRHLAFFNTTPHIVTFILGINAAMEEENVLDENFEVGTIDSIKTSLMGPLAGLGDS FFWGTLRLIATGVGTSLALQGNLLGPILFLLIFNVPHVIVRYLLNRWGYKLGTGFLKKIQ ANGMMESLTLGASIIGLMVVGAMTASMIDLTIPITISGSGKNAVTVQSIFDDIMPKLLPL ASFGFVFYLLKKEVKPLAILGGMAIVGILGSLIGLF >gi|284795459|gb|ADDQ01000090.1| GENE 5 3352 - 4143 908 263 aa, chain - ## HITS:1 COG:STM4537 KEGG:ns NR:ns ## COG: STM4537 COG3715 # Protein_GI_number: 16767781 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Salmonella typhimurium LT2 # 4 263 3 259 259 311 71.0 7e-85 MIGQAILLGCIAFIAQSEYALGTSLLSRPIVTGLFVGIVLGDVKTGVIMGATLELAFIGS FSVGASIPPDVVTGGILGTAFAITAGAGTETALVLGLPIATLTLILKNIYLGLLIPIMSQ KADQYAEEGAYKGVERMHLLAGFGLSFMLALIVTISFAVGSNTIKGLLDLIPEFIQHGLS VATGIIPALGFAMLARLLINKQVAPYFFLGFVLMAYFKLPVTGVAILGAITAVIVVNIMN YAKGKNETIQTTSGEVIDDDEDF >gi|284795459|gb|ADDQ01000090.1| GENE 6 4159 - 4629 565 156 aa, chain - ## HITS:1 COG:STM4536 KEGG:ns NR:ns ## COG: STM4536 COG3444 # Protein_GI_number: 16767780 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Salmonella typhimurium LT2 # 1 149 1 149 153 206 71.0 1e-53 MIKLLRVDHRLLHGQVAFSWTQGLGADCILIANDDVPKNDIRKTTIKLAKPAGVKLVIKT IEDAIAALKSGVTEKYKLFIVVESVEDAYRLATAYPEIKEINLGGMKVRENTRNISKAIN ITPDEEKMVKELVANGCEVEIRQVPNDKKVAVLNVL >gi|284795459|gb|ADDQ01000090.1| GENE 7 4641 - 5060 457 139 aa, chain - ## HITS:1 COG:STM4535 KEGG:ns NR:ns ## COG: STM4535 COG2893 # Protein_GI_number: 16767779 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Salmonella typhimurium LT2 # 1 128 1 128 140 95 36.0 4e-20 MERKIILATHGNFAAGIQTSLALICGETKNVECLCAYMEQPYDLTKTVKDILKNNQQNEL IVITDLFGGSVNNEFFNYVGKQAMHLISGLNLATLIEIYTQINTVDSLVDLVKRAVENGQ ESLCYCNELSSKEILEEEF >gi|284795459|gb|ADDQ01000090.1| GENE 8 5132 - 7903 2285 923 aa, chain - ## HITS:1 COG:STM4534_1 KEGG:ns NR:ns ## COG: STM4534_1 COG1221 # Protein_GI_number: 16767778 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Salmonella typhimurium LT2 # 1 454 1 458 460 419 48.0 1e-116 MLKMQIVDYLRNQTAFFEPSLVSEIFTASNIATTFSIKRNTANHYLNQLNEEGILVKINT RPVYFFHKEAFQQQNYLLKRTVYQSFQEMIDEQPVFDRKSDFFQSVIGYRGSLAQTIEQL KMAALYPGGGLPVLITGESGTGKSFLASLYYQFCLSKELLDDSAPFVTVNCAQYANNPEL LTSQLFGHLKGAFTGADSDKIGAFQSAEGGVLFLDEVHRLSPEGQEKLFTFLDQGIIYRM GETNRPIPVTCRLCFATTEEISSTFLTTFLRRIPIQIKIPSLAERTQAERKQLIMRAFYE EQQAIQKVVTITPQVIQLLENHHYVGNVGELRNNIKIITARSFAVNLDKHVIPITLHDLP KEFLDQSIKLTPDENELPIRLDEQTNLVSLLEETELAQRKIIQSYERILRLYVSHHHHLS TANNDISKEIERLFDDLLFEKKREKNHEMLLFITQNIRQLLETIESSYQIRFNGSLVYAL STYLFQRRCIDWFPEKEPTTVIDELLTEVQTKLATSYGYAEQLLTLVKRSLDIELSQMDR IIVTIYLHYSGSVKESHYPKAVIVAHGYATASSIANVANRLLNVPIFQSFDMPLNVTPKK ISEHLIHYMERQETRNGLVILFDMGSLKEIYQYFPAEEEGPFLLMNNVTTSLALSIGEAI KDEVSFEELPQKALTVHPNEWEIILPENKTERVILTTCSTGIGTAVKIRDLLEKSLPAEA QLKIIPCEYNQLRNAESIKESFTEYEIVGIIGTNNPSSNDLPYISLEELIAGKGITTLLE WTKRELTKDMLSYVNHELIRNFSLDRVIQSVTILDTEKIIRQVEVFLIQLEERWQQTIQN DRKLAVYVHVSCLIERLIRNEPIENYNGAEQLKQCQRTVLQELKEAFSVIEKVYSVNIPE SELFYVYDVLFGKTEFNNAESDF >gi|284795459|gb|ADDQ01000090.1| GENE 9 8474 - 9841 1128 455 aa, chain - ## HITS:1 COG:lin2806 KEGG:ns NR:ns ## COG: lin2806 COG0232 # Protein_GI_number: 16801867 # Func_class: F Nucleotide transport and metabolism # Function: dGTP triphosphohydrolase # Organism: Listeria innocua # 3 453 1 461 465 275 36.0 2e-73 MKMNWRQLVGTYRISDNGKQYQNDWLNKQVDLATELRKSFDSDYRRVRVIKSDAFRRLQD KTQVFPLERNDFVRTRLTHSLEVAMHSRDILRLVISQLNERNIEVMELSECYRLLETAAL IHDIGNPPFGHFGEEAIRIWFEKNGPLYACWSDFSEQQQNDFLNFEGNAQTIRLLTKLHH DNGTSKAGMKLTATTLDTVIKYTASSDQLNKQQLLSKKVGYFYSEKQVFNAIKFATGTQN KRHPLVFLLEASDDIAYTFSDIEDAYNYGLYSYQDLKQFVDGQTGTKKFLMLEKDKTEEA TLQEFLRKTQRAVCQSVAKNFANHYDLIMRGIYHNEIIIEDCDEVKCFQALKNFSRAYVF QTKTILDQEVLGFNIINRLLDEFVPVVLKYEKVSMNKYEERIFNNISESAKALYRREAKN ATEAEKDYYRLKMAVDFVCNMTDGYAKKVYDTLFT >gi|284795459|gb|ADDQ01000090.1| GENE 10 9858 - 10682 677 274 aa, chain - ## HITS:1 COG:no KEGG:EF1959 NR:ns ## KEGG: EF1959 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 274 1 274 274 543 99.0 1e-153 MSNGKKIFISHSSKDQEYVDAFIQLLKKFGFRTQDIFYSSTIETGVQPGELIFDTIKREL TNQPVMLYFLSDHYYQSIPCLNEMGASWMLSDKHYPIALNNFSMKDMKGVISSERLAIAF NDKTSTNEINCLLKKLSHDTDVQAEPDFELNVEKNIQPFQNKLTQLIRQASYLKPDEKGY FETTLSTHRPVYGTAKGVYDCFKLPSLIEPKSLGLDTLSEDESHWLFFFLTWGTFQEGEK VRFKLKKDKAYNNREFSDIGKCKNIYVSYLEKVE >gi|284795459|gb|ADDQ01000090.1| GENE 11 11036 - 12334 1709 432 aa, chain - ## HITS:1 COG:SP1128 KEGG:ns NR:ns ## COG: SP1128 COG0148 # Protein_GI_number: 15900994 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Streptococcus pneumoniae TIGR4 # 1 430 1 433 434 667 82.0 0 MSIITDIYAREVLDSRGNPTIEVEVYTESGAFGRGMVPSGASTGEYEAVELRDGDKARYL GKGVTKAVDNVNNIIAEAIIGYDVRDQMAIDKAMIDLDGTPNKGKLGANAILGVSIAVAR AAADYLEVPLYHYLGGFNTKVLPTPMMNIINGGSHADNSIDFQEFMIMPVGAPTFKEALR MGAEVFHALASILKGRGLATSVGDEGGFAPNLGSNEEGFEVIIEAIEKAGYVPGKDVVLA MDAASSEFYDKEKGVYVLADSGEGEKTTEEMIAFYEELVSKYPIISIEDGLDENDWDGFK KLTEVLGDKVQLVGDDLFVTNTTKLAEGIEKGIANSILIKVNQIGTLTETFEAIEMAKEA GYTAVVSHRSGETEDSTISDIAVATNAGQIKTGSLSRTDRIAKYNQLLRIEDQLGDVAEY KGLKSFYNLKNK >gi|284795459|gb|ADDQ01000090.1| GENE 12 12466 - 13221 910 251 aa, chain - ## HITS:1 COG:L0006 KEGG:ns NR:ns ## COG: L0006 COG0149 # Protein_GI_number: 15673116 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Lactococcus lactis # 2 251 3 252 252 386 80.0 1e-107 MRKPIIAGNWKMNKTLSEAQSFAEAVKNAVPSNDVVDAVIGSPALFLAPLAWNLKDSEVK LAAQNCYWENAGAFTGENSPAAIADLGVDYVIIGHSERREYFHETDEDINKKAKAIFANG MTPIFCCGETLETYEAGKTAEWIEGQITNGLVGLSNEQVASMVIAYEPIWAIGTGKSADA NIADEICGVVRSTVEKLYGKEVSEAVRIQYGGSVKPENIAEYMAKENVDGALVGGASLEA DSFLALLDAVK >gi|284795459|gb|ADDQ01000090.1| GENE 13 13270 - 14463 1473 397 aa, chain - ## HITS:1 COG:lin2552 KEGG:ns NR:ns ## COG: lin2552 COG0126 # Protein_GI_number: 16801614 # Func_class: G Carbohydrate transport and metabolism # Function: 3-phosphoglycerate kinase # Organism: Listeria innocua # 1 397 1 396 396 592 79.0 1e-169 MAKKTIKDVDLKDKKVLVRVDFNVPLKDGVITNDNRIVAALPTIKYVIENGGKAILFSHL GRVKTEEDKAGKSLKPVAERLSELLGQPVTFVPETRGKELEDAVNNMKDGDVLVFENTRF EDVDGKKESGNDAELGKYWASLGDVFVNDAFGTAHRAHASNVGIASTGIPTVAGFLMEKE IKFIGEAVENPKRPFVAILGGAKVSDKIAVIENLIEKADKILIGGGMAYTFMKAQGYSVG LSLLEEDKVDLAKSLMEKAGDKLVLPVDTVVSKEFSNDAPFHTVPSTEIPDDEEGLDIGE KTIELFANELQGAKTVVWNGPMGVFEMSNFAKGTIGVCEAIANLEDATTIIGGGDSAAAA IQLGYENKFSHISTGGGASLELLEGKTLPGLASINDK >gi|284795459|gb|ADDQ01000090.1| GENE 14 14590 - 15591 1347 333 aa, chain - ## HITS:1 COG:lin2553 KEGG:ns NR:ns ## COG: lin2553 COG0057 # Protein_GI_number: 16801615 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Listeria innocua # 1 333 1 334 336 549 83.0 1e-156 MTVKVGINGFGRIGRLAFRRIQDVEGIEVVAINDLTDAKMLAHLLKYDTTQGRFNGTVEV HEGSFNVNGKEIKVLANRNPEELPWGELGVDIVLECTGFFTSKEAAEKHLTAGAKRVVIS APGGNDVPTIVYNTNHETLTGEETVISGASCTTNCLAPMAKALHDNFGVVEGLMTTIHAY TGDQMTLDGPHPKGDFRRARAAAANIVPNSTGAAKAIGLVIPELNGKLDGAAQRVPVATG SLTELVTVLDKEVTVDEVNAVMEKAANESYGYNTDEIVSSDIVGMTYGSLFDATQTKVMT VGDKQLVKTVAWYDNEMSYTAQLVRTLEYFANL >gi|284795459|gb|ADDQ01000090.1| GENE 15 15631 - 16668 984 345 aa, chain - ## HITS:1 COG:lin2554 KEGG:ns NR:ns ## COG: lin2554 COG2390 # Protein_GI_number: 16801616 # Func_class: K Transcription # Function: Transcriptional regulator, contains sigma factor-related N-terminal domain # Organism: Listeria innocua # 13 342 13 342 348 325 50.0 8e-89 MLKEFKMIEAVAPDMLDVLQERFQILRNIYWMQPIGRRSLSETMGITERVLRTETDVLKQ LNLIEPSKSGMTLTERGLEVYQGLELVMNQLLGMHQIEKEMTQYFGIQRCIVVAGDSDIQ KKVLSDFGDVLTNTLNLLLPNGENTIAVMGGTTMAMVAENMGSLETEKRHNLFVPARGGI GEAVSVQANSISAVMANKTGGNYRALYVPEQLSRETYNSLLQEPSIQEVLTLISHANCVV HSIGRALHMAARRKMSDDEMVMLKQKNAVAESFGYFFDEEGKVVYKIPRIGLQLKNLQEI PYVVAIAGGKTKAKAIRAYMKNAPKQTWLITDEAAANEILKGVTL >gi|284795459|gb|ADDQ01000090.1| GENE 16 17088 - 17966 859 292 aa, chain - ## HITS:1 COG:SP2113 KEGG:ns NR:ns ## COG: SP2113 COG1284 # Protein_GI_number: 15901928 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 3 290 25 312 313 320 52.0 2e-87 MKKIYDGLPVHDYTTKFSVSIVYAILASIAMNFFYQPGNIYSSGLTGLAQILTTLSTKIV GFNVPVSITLYLLNVPLFFIAWKKIGKKFTIFTFITVTLTSLFMHIVPQTVMTQDPIICA IFGGAISGSGIGFVLKNGVSSGGLDILSITIRKKTGRSVGSISIYFNALIVFVAGYLFGW QYMFYSALSIFVSGKVTDAVYTKQKKMQVMIVTKNPDRVVDEIQKKMRRGITIIHEAEGA YRHDRQTVLLTIVTRFELPSLEAAMKESDPNAFVSISDNVKILGRFYEEDYK >gi|284795459|gb|ADDQ01000090.1| GENE 17 18109 - 18678 798 189 aa, chain - ## HITS:1 COG:L86338 KEGG:ns NR:ns ## COG: L86338 COG4475 # Protein_GI_number: 15672471 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 3 182 1 180 180 204 60.0 1e-52 MTIDEKMLKEQLVTITEEVITAGNLQKGDLFVLGCTTSEVVGGVIGKNSSAEVGQWIVST LIEQLDKKGISLAVQGCEHINRALAMERRVAEEKGFEIVSVVPQLHAGGSCSVAAFEKFD EPVEVEHIVAQAGIDIGDTSIGMHVKHVQVPLRLSIRTLGAAHVTALYSRPKYIGGPRAH YETTQERNR >gi|284795459|gb|ADDQ01000090.1| GENE 18 18675 - 19181 676 168 aa, chain - ## HITS:1 COG:SP1597 KEGG:ns NR:ns ## COG: SP1597 COG4720 # Protein_GI_number: 15901437 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 2 154 6 152 153 105 43.0 5e-23 MTRKISLYAVITALTVAVSMVFIIPVPATNGFVTLADAGIYIASLLFGPIGGLTVGALSG GLIDLLSGYPQWFVFSLLIHGGQGWLAGHFFNKNKKMQTLGLLLASLLMISGYALATSWL YGVGAGIASLPGNIIQSLFGVIVALPLSQTLKRVLPKNGRLEERRMNK >gi|284795459|gb|ADDQ01000090.1| GENE 19 19165 - 19980 733 271 aa, chain - ## HITS:1 COG:L0202 KEGG:ns NR:ns ## COG: L0202 COG0351 # Protein_GI_number: 15672469 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Lactococcus lactis # 2 241 8 249 262 182 40.0 6e-46 MTKIILTIGGSDPFSGGGIQTDLKTFENHQVFGLSTLTCLATAPKNHFQIHDLETSLVKE QLASIPAGSLDGIKIGLIHSEESMLQIATFLKKHAGLPVVLDPVLAFKETTSVYEKRYMQ LLIEKLFPFATIITPNLKEAELLIGRKLTTVEEVQQAAEELNSLGAATVVIKGGNRWLGQ EARDFFYDGQQHIQLVKEKVMAHTIDGAGCSFASAIGANLVKGYPLIEAVDLAKTYVHEA IVSGVQLNAAFGSVWHEGLLAGGVADNDKKN >gi|284795459|gb|ADDQ01000090.1| GENE 20 20155 - 21924 2299 589 aa, chain - ## HITS:1 COG:lin1554 KEGG:ns NR:ns ## COG: lin1554 COG0173 # Protein_GI_number: 16800622 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl-tRNA synthetase # Organism: Listeria innocua # 1 583 1 584 591 802 67.0 0 MAKRTTYCGNVSAEFIEKEVVLKGWVQKRRDLGGVIFIDLRDREGIVQVVFNPEKSKEAW EIADKCRSEYVIEVKGQVVYRDKEAINPKMKTGEFEVMATDITILNTAKTTPFTIEDDNN VNDELRMKYRYLDLRRPSMTNNIKLRHQVTKTIRHYLDNHDFLDIETPYLGKSTPEGARD YLVPSRVHAGHFYALPQSPQLFKQLLMGAGFDRYYQIVRCFRDEDLRGDRQPEFTQIDIE TTFLTPEEIQTYTENMLAEVMKETKGIEISVPFPRMRYDEAMARYGSDKPDTRFAMELID VADVVKDVDFKVFQAALENGGHVKALNAKGAADKYSRKDMDNLGKYVSQFGAKGLAWLKV EEDGLKGPIAKFLTEVSDELIAATNAEVGDILMFGADKPEIVAAALGAVRTRLGKELGLI DESKFNFLWIVDWPLFEYDEEAGRYVSAHHPFTQPKAEDVARLATDPASVYAEAYDVVLN GYELGGGSLRIHTRELQEKMFETLGFTKEEAQDQFGFLLDALDYGFPPHGGIALGLDRLA MLLAGEENIREVIAFPKNGKAIDPMNNAPSLVSPLQLFELNIDVTAIDE >gi|284795459|gb|ADDQ01000090.1| GENE 21 21942 - 23243 1576 433 aa, chain - ## HITS:1 COG:SP2121 KEGG:ns NR:ns ## COG: SP2121 COG0124 # Protein_GI_number: 15901936 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Histidyl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 426 1 424 429 554 64.0 1e-157 MSYQKPKGTNDILPGTSEKWQFVEETARLIFKDYQYQEIRTPIFEHYEVISRSVGDTTDI VSKEMYDFYDKGDRHVTLRPEGTAPIVRAFVENKLYGPEYTKPYKTYYMGPMFRYERPQA GRLRQFHQIGVEAFGSENPALDVEIMAMALDFFKQLGIQQIKLVINSLGDKETRATYRQA LIDYLEPHMAELSEDSQRRLHENPLRVLDSKDKKDKVIVAEAPSILDYLNEPSKAHFEAV TDMLDLLEIPYEIDSNMVRGLDYYTHTIFEIMSEAPKMGAQSTICAGGRYNGLVEELGGP DTPGFGFGMGIERVLLTMEAEEVVIPALSELDAYVVGIGSETNIAALQLVQSIRNFGFSA DRDYMNRKPKAQFKTADKLQAKLVLTIGENELNEGIVNVKSMATREEKAFPLSAIHDSFD EVYDEMMTKMIEE >gi|284795459|gb|ADDQ01000090.1| GENE 22 23601 - 24047 537 148 aa, chain - ## HITS:1 COG:SPy1980 KEGG:ns NR:ns ## COG: SPy1980 COG1490 # Protein_GI_number: 15675771 # Func_class: J Translation, ribosomal structure and biogenesis # Function: D-Tyr-tRNAtyr deacylase # Organism: Streptococcus pyogenes M1 GAS # 1 146 1 145 147 174 60.0 4e-44 MKVVIQRVSQAQVAIEEQIVGQIKQGFMVLVGIHQEDTPEDVAYIVGKISKLRVFEDDEG KMNRSIQEIEGSILSISQFTLYAKTKKGNRPSFIEAARPDVAIPLYELFNQQLEAEGIAV ATGEFGADMQVSLTNDGPVTIVIDTREK >gi|284795459|gb|ADDQ01000090.1| GENE 23 24071 - 26284 2554 737 aa, chain - ## HITS:1 COG:lin1558 KEGG:ns NR:ns ## COG: lin1558 COG0317 # Protein_GI_number: 16800626 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Listeria innocua # 1 734 1 735 738 981 66.0 0 MPKEEILTGPAVIKIVSTYMGPEHVELVQKALTYAEKAHEGQVRQSGEPYIIHPIQVAGI LAELHMDPHTVATGFLHDVVEDTDVTLDDLKEEFGEDIAMLVDGVTKLGKIKYKSHEEQL AENHRKMLLAMAQDLRVIMVKLADRLHNMRTLKHLREDKQRRIAQETLEIYAPLAHRLGI SRIKWELEDTALRYINPNQYYRIVNLMQSKRDEREAYVAEAVEDIRLATEDLEIYAEIYG RPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVDSIKDCYAVLGAIHTRWTPMPGRFKDYI AMPKANMYQSIHTTVIGPKGNPVEVQIRTHEMHQIAEFGVAAHWAYKEGKAEKIETDELT KQVDWFHEIIELQDESYDASEFMQGVKEDIFSDKVYVFTPSGDVTELPKGSGPLDFAYSI HTEIGNKTTGAKVNGKMVQLDYVLKNGDIIEVLTSPNSFGPSRDWLKMVKTSKAKNKIKR FFKEQDREDNIIKGHDAVIKYMAEIGFTPKEFLTKNKMAEVLDKFKFQTEDDLFAAVGYG EVSAQVVCNRLTEKERREQELERQRQEAEELLNQPAKKESEKMKVRHEGGIVIQGVDNLL IRLSRCCNPVPGDEIVGYITKGRGVSIHRADCPNVQHQEELAQRLIEVEWEDTEHSRKEY AADLEIYGYDRSGLLSDVLQVISSMTKNLVGVEARPSKDKMAQIHVTVKIQNLSHLKTIV DKIKSVPDVYSVRRTNG >gi|284795459|gb|ADDQ01000090.1| GENE 24 26499 - 27251 725 250 aa, chain - ## HITS:1 COG:lin1507 KEGG:ns NR:ns ## COG: lin1507 COG1385 # Protein_GI_number: 16800575 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 248 1 249 255 234 49.0 9e-62 MQRYFMKEDYQEKDLYKVADENYHHIVRVMRMTPNDHCYLVFQNKTAILAEIVEIDSTSV YFKEISKEEMDKELPIEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHK KRAAKEKRLQKIATEAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEK SQLAQVLSTCQPGARLCVLFGPEGGFAPQEIEQFLQAGAKLCGLGPRILRAETAPLYLLS AVSYQMELLN >gi|284795459|gb|ADDQ01000090.1| GENE 25 27253 - 28200 1600 315 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227519318|ref|ZP_03949367.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis TX0104] # 1 315 1 315 315 620 100 1e-177 MKWTEVKVETASEAVEAISNIMMEAGASGVAIEDALDIENFESDLYGEILDKEQFTHIKE GAIVMAYFPETTFLPEILPFMKENILRLPEYGLSIGKNEMTISEVAESDWATAWKKYYHP VRVTRFLTIVPSWEAYHAQDEAEKIITLDPGMAFGTGTHPTTRLTLQALETVLRGGETVL DVGTGSGVLSIASRYLGAKDVYAYDLDEVAVAAAKENMDLNPIAADVHVSANDLLKGIDH SADVIVANILADIIVLMIEDAWRLLKQDGTFIISGIIEDKKAMVLEALTKVGFVVDQLFN QGDWYAIILKKPEEE >gi|284795459|gb|ADDQ01000090.1| GENE 26 28216 - 28701 714 161 aa, chain - ## HITS:1 COG:no KEGG:EF1977 NR:ns ## KEGG: EF1977 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 161 1 161 161 282 99.0 3e-75 MKKATMLTYLEERLEKHLGDYEVGLDWDRKNHTIEVIVRLYAENNEQVAIDDVDGTLSEE EFIEFEDGLLFYNPQKSVVDDEEYLVTIPYEGKKGLRKAVLDGFIHYLKVVLDEGQSDLL DFLSDETAEVFELHWEPADFEAMIKKVAETEKEQWIAYPSY >gi|284795459|gb|ADDQ01000090.1| GENE 27 28658 - 29335 895 225 aa, chain - ## HITS:1 COG:SA2134 KEGG:ns NR:ns ## COG: SA2134 COG2094 # Protein_GI_number: 15927924 # Func_class: L Replication, recombination and repair # Function: 3-methyladenine DNA glycosylase # Organism: Staphylococcus aureus N315 # 8 198 3 192 202 186 46.0 2e-47 MKETINIFNTKTTEEVAQYLLGMYLEHETATGVLGGYIVDAEAYLGPDDEAAHSFGLRKT PRLQAMYDKPGTIYLYTMHTHLILNMVTQEQGKPQGVMIRAIEPVEGVDKMIENRQGRQG VELTNGPGKLVAALGIDKQLYGQSIFSSSLRLVPEKRKFPKKIEALPRIGIPNKGRWTEL PLRYVVAGNPYISKQKRTAVDQIDFGWKDEENEKSNNAHILRGTT >gi|284795459|gb|ADDQ01000090.1| GENE 28 29464 - 30741 1457 425 aa, chain + ## HITS:1 COG:lin1549 KEGG:ns NR:ns ## COG: lin1549 COG2256 # Protein_GI_number: 16800617 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Listeria innocua # 3 425 4 426 427 595 69.0 1e-170 MQQPLAYRMRPRHLDEVVGQQHLVGPGKIIRRMVEAKMLSSMILYGPPGTGKTSIASAIA GSTNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI IMIGATTENPYITINPAIRSRTQIFEVKPLTETDIQQAIQEALTDSTRGLGDYPVHLEEK ALQHLTRATNGDLRSALNGLELAVKSTPKNEQGEIKITLPIIEECVQRKALTHDKDGDAH YDVISAFQKSIRGSDVDAALHYLGRLVEAGDLPIICRRLMVIAYEDIGLGNPAAAARTVT AVQAAEKLGFPEARIPLASVVIDLCLSPKSNSAVTAIDAALADIRQGSVGDVPDHLRDAH YAGAKELNRGIGYQYPHNFENGWVNQQYLPDKLKEARYYEPIDIGKYEQALHQQLKRIQE WKQKK >gi|284795459|gb|ADDQ01000090.1| GENE 29 30825 - 31028 93 67 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYALSFHCVDRTFLLISRDPACIKVGNMPFLLVVQYCDRGTHLLILRVQYSRTITGIDGF YHFYEDF >gi|284795459|gb|ADDQ01000090.1| GENE 30 31069 - 31347 287 92 aa, chain + ## HITS:1 COG:no KEGG:EF1980 NR:ns ## KEGG: EF1980 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 92 19 110 110 114 100.0 1e-24 MIRILVLLLAVVTGVASYYLMKKSAAFLPLLKKETATESQQFIERFGRYYLIIAILGVLA AIFNRPLLSIGFIFFVLLLSTLFSLTFAKKMS Prediction of potential genes in microbial genomes Time: Sun May 15 13:15:16 2011 Seq name: gi|284795458|gb|ADDQ01000091.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont196.1, whole genome shotgun sequence Length of sequence - 29568 bp Number of predicted genes - 25, with homology - 25 Number of transcription units - 14, operones - 6 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 38 - 97 9.3 1 1 Tu 1 . + CDS 127 - 1077 1287 ## COG1054 Predicted sulfurtransferase + Term 1092 - 1151 17.1 + Prom 1088 - 1147 8.3 2 2 Op 1 . + CDS 1301 - 1639 300 ## EF0750 cell wall surface anchor family protein 3 2 Op 2 . + CDS 1639 - 2370 850 ## EF0751 hypothetical protein 4 2 Op 3 . + CDS 2387 - 3166 919 ## EF0752 hypothetical protein 5 2 Op 4 . + CDS 3186 - 5285 1961 ## EF0753 hypothetical protein 6 2 Op 5 . + CDS 5308 - 6048 873 ## EF0754 hypothetical protein 7 2 Op 6 . + CDS 6123 - 7217 873 ## EF0755 hypothetical protein + Prom 7318 - 7377 8.9 8 3 Op 1 . + CDS 7410 - 7868 310 ## EF0756 hypothetical protein 9 3 Op 2 . + CDS 7875 - 9320 904 ## EF0757 hypothetical protein + Prom 9325 - 9384 6.0 10 4 Op 1 . + CDS 9430 - 11334 2015 ## COG2217 Cation transport ATPase 11 4 Op 2 . + CDS 11370 - 12089 676 ## COG1285 Uncharacterized membrane protein + Term 12102 - 12142 8.6 - Term 12090 - 12130 8.6 12 5 Op 1 16/0.000 - CDS 12137 - 12874 296 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 13 5 Op 2 . - CDS 12876 - 15044 2371 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - Prom 15068 - 15127 5.3 + Prom 15112 - 15171 7.4 14 6 Op 1 7/0.000 + CDS 15323 - 17320 2481 ## COG0556 Helicase subunit of the DNA excision repair complex + Term 17332 - 17387 17.1 + Prom 17339 - 17398 2.0 15 6 Op 2 . + CDS 17438 - 20257 3017 ## COG0178 Excinuclease ATPase subunit + Term 20277 - 20318 6.2 + Prom 20332 - 20391 11.3 16 7 Tu 1 . + CDS 20429 - 21223 828 ## EF0764 hypothetical protein + Term 21258 - 21295 7.3 + Prom 21306 - 21365 6.1 17 8 Op 1 12/0.000 + CDS 21389 - 22276 963 ## COG1660 Predicted P-loop-containing kinase 18 8 Op 2 12/0.000 + CDS 22276 - 23271 1045 ## COG0391 Uncharacterized conserved protein 19 8 Op 3 . + CDS 23305 - 24240 1052 ## COG1481 Uncharacterized protein conserved in bacteria + Term 24254 - 24310 7.6 + Prom 24422 - 24481 3.9 20 9 Tu 1 . + CDS 24629 - 25396 889 ## EF0769 hypothetical protein + Term 25406 - 25459 12.2 + Prom 25419 - 25478 9.6 21 10 Tu 1 . + CDS 25508 - 26026 573 ## COG1651 Protein-disulfide isomerase + Term 26032 - 26070 9.5 - Term 26011 - 26066 16.0 22 11 Tu 1 . - CDS 26070 - 26663 794 ## COG0740 Protease subunit of ATP-dependent Clp proteases - Prom 26693 - 26752 6.7 + Prom 26771 - 26830 6.0 23 12 Tu 1 . + CDS 26859 - 27377 496 ## EF0773 hypothetical protein + Term 27383 - 27433 6.6 24 13 Tu 1 . - CDS 27398 - 27802 478 ## EF0774 hypothetical protein - Prom 27829 - 27888 6.1 25 14 Tu 1 . + CDS 28267 - 29566 1477 ## EF0775 anchor protein, putative Predicted protein(s) >gi|284795458|gb|ADDQ01000091.1| GENE 1 127 - 1077 1287 316 aa, chain + ## HITS:1 COG:SA2481 KEGG:ns NR:ns ## COG: SA2481 COG1054 # Protein_GI_number: 15928275 # Func_class: R General function prediction only # Function: Predicted sulfurtransferase # Organism: Staphylococcus aureus N315 # 1 308 1 308 318 493 75.0 1e-139 MKYQVLLYYKYTTIEDPEAFAKEHLAFCKSLNLKGRILVATEGINGTLSGTVEETEKYME AMQADERFKDTFFKIDPAEEMAFRKMFVRPRSELVALNLEEDVDPLETTGKYLEPAEFKE ALLDEDTVVIDARNDYEYDLGHFRGAVRPDIRSFRELPQWICENKEQFMDKKIVTYCTGG IRCEKFSGWLLKEGFEDVAQLHGGIANYGKNPETRGELWDGKMYVFDDRISVEINHVDKK VIGKDWFDGTPCERYINCANPECNRQILTSEENEHKHLGGCSLECSQHPANRYVKKHNLT EAEVAERLALLEAVEV >gi|284795458|gb|ADDQ01000091.1| GENE 2 1301 - 1639 300 112 aa, chain + ## HITS:1 COG:no KEGG:EF0750 NR:ns ## KEGG: EF0750 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 112 1 112 112 194 98.0 7e-49 MKIIKRFSLVCLGLLIIGLQTKSVMAEENNYESNGQASFYGTYVYENEKESNDVAYTQQS EEQGRNNLAASGQAVLPKTGESENPLYSLIGVSLLGVVIYLINKMKREKELI >gi|284795458|gb|ADDQ01000091.1| GENE 3 1639 - 2370 850 243 aa, chain + ## HITS:1 COG:no KEGG:EF0751 NR:ns ## KEGG: EF0751 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 243 1 243 243 423 100.0 1e-117 MKKTVLLTSATILLGVGFQAINASAAETFPKEYNTEGTITFEAGDNEITPPVDPENPDPT DPVDPIDPPGPGTGGALSIDYGSKFKFGTQKISTADQTYYAAPDEMKDGSKKPTYVQVTD KRGTLAGWKLTLSQPEQFKTATGEELVGAQLTFTKAEAASMVDEKYKPTEVSSTISLTPG VNNNLAMNAKKETGVGTWVYRFGSNEATNKEAVQLFVPGKSVKLAQQYSTKLVWALEDTP ANN >gi|284795458|gb|ADDQ01000091.1| GENE 4 2387 - 3166 919 259 aa, chain + ## HITS:1 COG:no KEGG:EF0752 NR:ns ## KEGG: EF0752 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 259 1 259 259 457 100.0 1e-127 MKKQFTGIVLCSTFAVAGWSLQAKAEEPKEYRSNGLVEFIPNVDPTEPVDPENPDPEKPV KPIDPTDPEGPNPGTQGPLSIDYASSFDFGKNRISNKDQVYFARAQQYQENQKETPNFVQ ISDNRGTNSGWSLTVTQKEQFKATKATLNSQLTGAQISLANPTVNSNAQNVVKPEATNKI ALVPGTASLVAAAKQGTGAGTWATYWGKVEVVAERDETNTVHNVNVTKDVALSVPGSTPK DAVKYQTKLLWTLTDVPGI >gi|284795458|gb|ADDQ01000091.1| GENE 5 3186 - 5285 1961 699 aa, chain + ## HITS:1 COG:no KEGG:EF0753 NR:ns ## KEGG: EF0753 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 699 1 699 699 1269 98.0 0 MRNKQSLVFLASSLFLLLLAPITSEAISNPSTNINEVNREIVEESANDQATSAPSHSETL EQESSLETTTTTDNHPAETDQSTATLEPSEQQKDDDNSATESAIVEPQPRMLAAPYATSL PDDPNIIPIDKVFQEPIGNATSILEGGKLLQLNPAVKSQKGAIWSKKPISLLSDFTFKSY LYLGNEYANAGDGMTFTLTNDPRMSTTPQEVIGSPGMGIGAYSTKAGQPYVRNALSIEFD TYKNTGSSNRMDREISQDKGNGHLAFVTPKANNNSYTGEHSGVTVAPTYLSNGTWRMLTV HWNAATKALTYDLEGVGTNTYVVSDLNAQFGATTVYWGFTSSTGGKYQENALAMTQIPTN VTSQAALSVNGQEFSSAVEAVKNDQVRLRNTLNIDNDFIEDRQPQVSIDLPDELAYEENS LTIDGKKVAAKDLTQTGNHLTITLNDYLVLKKDMMIELKTTLQDNTSEKVLTMNFDYYEE GTLLQKSNNVTITIPKPTEKTVTVFYKDAEGKDIAPPKSVTGKIGAPYQEKPLDISGYVF TKDSGNAEGTMTEETKDIYFYYRLGELYFKEAPKQITFGTEKIRNQPLIKLGHPTEGLKV VDERNANNWRLQLKQTQPLTNDSIVMPDVFSFVSTAGSSQITNEAITLLKSNQKGETDLT ALLDESKQQGIQINVPVAYQRVGTFKARLSWALEDVPGN >gi|284795458|gb|ADDQ01000091.1| GENE 6 5308 - 6048 873 246 aa, chain + ## HITS:1 COG:no KEGG:EF0754 NR:ns ## KEGG: EF0754 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 246 1 246 246 391 99.0 1e-107 MKKVTTVCLSTFILGSLGMTSQAFAEDGGSYTSNGIVEFTPSEEPTNPVDPTDPTNPVDP IDPTDPEGPNPGTNGPLSIDYASSLDFGVQKITSKDQTYFAATQKYKTVGATDEVKEGPN YVQVTDNRGTEAGWSLKVKQEGQFKSTSGKELTGAAITFKNGNVVTASDSGKPTGPATIT LNSDGSQSDVMSAAKGNGAGTYLFDWGTDATTAAKSIELAVPGSTTKYAEKYATKLTWTL TDAPGN >gi|284795458|gb|ADDQ01000091.1| GENE 7 6123 - 7217 873 364 aa, chain + ## HITS:1 COG:no KEGG:EF0755 NR:ns ## KEGG: EF0755 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 364 1 364 364 573 99.0 1e-162 MNRKKQRFLFFPILLILLALVPSNGFASEFNFAVTPIPSEKQVDKEKTYFDLLLAPNEET ELKVNLRNDTDKEVKVGISINSAITNSNVIVEYGENKGKKDQSLAFDIKDYVQYPSSVRL KPKSEQTVSINVKMPNTPFDGVLASGITFKEETSDEGKRQDDKSQGLSIKNEYSYVVALL MQQNKKMVEPNLLLKKVSPGQINARNVILVNLQNDQKTYINQVAFSAEITKKGHEEVLYK EEKANMQIAPNTNFSVPIALKGQPLKPGDYHLSMTVVGNKDAAGSFKKSINNESISFRNQ WQFEKDFTINGEVAKELNEKDVTLKENHSNLYLMIGLLLLLIVILIIAWLIWRKKKQEKN EREI >gi|284795458|gb|ADDQ01000091.1| GENE 8 7410 - 7868 310 152 aa, chain + ## HITS:1 COG:no KEGG:EF0756 NR:ns ## KEGG: EF0756 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 4 152 1 149 149 209 95.0 3e-53 MRKMDKYKHLLLWSTLLLSFFQVTTVQAAEERNPIYNPTNPTEEIYPIENTGTPEKMEET NESTITSDTQAEESSEEVSKKEVKTNNPKTNEERPSSKKSQHQVFFTDELFDASHITIVP NSTGGAGTEGQNTFYLNFIQELVGTAIYGRKN >gi|284795458|gb|ADDQ01000091.1| GENE 9 7875 - 9320 904 481 aa, chain + ## HITS:1 COG:no KEGG:EF0757 NR:ns ## KEGG: EF0757 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 481 2 482 482 876 99.0 0 MNYEIFLNKEDQRSYSLLRHLEESPTLSGTFIALREELSMSNFLVKKTLEKLKADIDNLK LSDSLTLVVSDVDVTLEIDGNYSSKLLLTKYLTESLSFKLVLSYFRGNYSLTKFAECNHV STSVAYSTLQRLKKALKEYQIYFSKREIVGNQKAISFFLYKLFTLSNQPISELYSVKVYN EAKRVLQSVELNYTFTTYERRNFFHYLAIMINNEGRAVEGIDTRALNTFSQELIKKSQVA WALASKSLTYTIVFFLYLHGKLEKKYVIHEDPTIESLTRVFIGSFEKAFNCLEESTRNTL EEGLAIIHFNVIYFPLNMFDDFEMDLQFFKQTYPEFYFYLIEYIRWLTAKHKKIAKANHC LFFNYLLLLINHVPVHLIAEPAKVLIDFSYGKEYNQFIKKNLSVYVNLNVEIIDPLSDTL PDVVITNLNNLYQEEQSKVMVWLDPPRSIDWVNLTQSLLTIQEEKYQQQKESTKTSGDPI E >gi|284795458|gb|ADDQ01000091.1| GENE 10 9430 - 11334 2015 634 aa, chain + ## HITS:1 COG:BH0744 KEGG:ns NR:ns ## COG: BH0744 COG2217 # Protein_GI_number: 15613307 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Bacillus halodurans # 22 630 32 636 637 455 43.0 1e-127 MSKQTGAHTHEEKGKNVPVILFFTGLALFFIGLFLGNMLLVKNILFSLAAILAGYHIIGE GFGDTYRDTKNNRKFSPNIHLLMTLAAVGSALMGSFEESALLILIFAAAHFLEDYAQGKS QREITKLLNLNPTEARLITDDGSIQTVSVEQLKIGDRVQVLNGAQIPTDGVVIEGSTAVD ESSINGESIPKEKNSGDPVFGSTMNGSGTIVVEVTKDSSETVFAKIVQLVNQSQENQSEI ASKIKRFEPKYVTLVLAVFPLIVLGGALLFQLTWAESFYRGLVFLIAASPCALAASAVPA TLSGISNLAKQGVLFKGGSFLSNLAEVKALAFDKTGTLTKGKPEVTDYLFVDGLEDRQDE LVAVLTNMEKKSNHPLATAIVNRFEAETTALNLEVENIVGVGLVTTIADTTFRIGKPSSF EQVPTIIEKQTTKLASEGKTVVYFAENQQVIGLVALMDVPNEEAMNAIHYFKSQNIETTM ITGDAKLTGEAVGHLVGVDQVFANVLPEEKSAIVDQLKREVGMTGMVGDGINDAPALVNA DIGVAMGDGTDIAIDVADVVVMKNDLSKLGYAHRVSKRLNRIVQQNIIFSMLVVATLIIL NFLGIANIAFSVLIHEGSTLVVIFNGLRLLVNTK >gi|284795458|gb|ADDQ01000091.1| GENE 11 11370 - 12089 676 239 aa, chain + ## HITS:1 COG:BH3225 KEGG:ns NR:ns ## COG: BH3225 COG1285 # Protein_GI_number: 15615787 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Bacillus halodurans # 11 213 1 220 232 97 31.0 1e-20 MNSLKMIELSLTDVVIRMALAVVFGALIGLERSIKRKGFGISSNAILCLASCTISILQIQ SVDILVDVVKQNSALASIISMDITRYGAQVISGVGFLGAGIIVFRERKVSGLTTAVMMWN VTIIGLVIGMGFLTIAFINLVATLLVLALAHFKRKTPLKRLQLIVKMKEPMIKESRLHEQ LQASLEKGERLVELTLESEQEAVTAKISYVGKEDFWHSNLHHLLKEKGHVQSVSVTETI >gi|284795458|gb|ADDQ01000091.1| GENE 12 12137 - 12874 296 245 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 219 1 221 223 118 33 4e-26 MTEKILVEHLVKKYGDNTVLNDINVSINEGDVVCVIGPSGSGKSTFLRCLNQLEEASSGD IIIDGANLTDKNTDINQVRQHIGMVFQHFNLFPHLSILENIVLAPTDLGRLSKDEAEKKA LELLERVGLADKKDAYPDSLSGGQKQRVAIARALAMNPDIMLFDEPTSALDPEMVGDVLG VMKDLAKQGMTMVIVTHEMGFAKEVANRVMFIDGGNFLEDGSPEQVFENPQNPRTKDFLD KVLNI >gi|284795458|gb|ADDQ01000091.1| GENE 13 12876 - 15044 2371 722 aa, chain - ## HITS:1 COG:L165_1 KEGG:ns NR:ns ## COG: L165_1 COG0834 # Protein_GI_number: 15673741 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Lactococcus lactis # 1 521 1 507 509 453 45.0 1e-127 MKRKHFLLSFFVMMVTLLTFISGTSAHAEGKKYTIGTDLTFAPFEFQDSKGKYIGIDVDL LDAIAKDQGFEVDLKPLGFDSAVQAIQSKQIDGMIAGMSITDERKKSFDFSDPYFDSGLQ LAVKKGNDKIKSYDDLKGKTVAAKVGTESANFLEKNKEKYDYTIKNFDDATGLYKALENG EADAIVDDYPVLGYAVKNGQKLQLVGDKETGSSYGFAVKKGQNPELIKKFNAGLKNLKDN GTYDKILNNYLATGDETNTQDAGEQMKKITPKKEKYVIASDSTFAPFEFQNAQGDYVGID VDLVKRAAELQGFTVEFKFIGFSSAVQAVESGQADGMVAGMTITDDRKKAFDFSVPYFDS GIQIAVKKGNDKIKSYDDLKGKKVGVKIGTESADFLEKNKKKYDYSIKYLDTTDALYSAL EIGEVDAMMDDYPVIGYGVAQNQPLATPIPREKGGSYGFAVKKGQNPELLEMFNEGLKEM KRTGEYDKIIGTYVKDGNEAKEETADESTFVGFMQNNWKQLLHGLWMTILLTLISFVLAL IVGVIFGLFSVSPIKALRVLSTIYVDLIRGIPLMVLAFFIYFGLPGVLGFNIPVFIAGII TLTLNASAYISEIVRGGIKAVPVGQMEASRSLGLSYNRTMQKIILPQAIRIMIPSFINQF VISLKDTTILSAIGLIELLQTGKIIVARTLQSTMVYFVIALIYLILITSLTKLAKNLEKK VN >gi|284795458|gb|ADDQ01000091.1| GENE 14 15323 - 17320 2481 665 aa, chain + ## HITS:1 COG:SP1238 KEGG:ns NR:ns ## COG: SP1238 COG0556 # Protein_GI_number: 15901100 # Func_class: L Replication, recombination and repair # Function: Helicase subunit of the DNA excision repair complex # Organism: Streptococcus pneumoniae TIGR4 # 1 663 1 660 662 996 77.0 0 MIERETSNTFHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQE VNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI NDEIDKLRHSATSSLLERNDVIVVASVSCIFGLGDPREYSQQVVSLRVGMEMDRNELLKS LVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHALRVEFFGDEIDRIREVDALTGEIV GETEHVAIFPATHFVTNEEHMEHAISQIQEELEARLKVLRSENKLLEAQRLEQRTNYDIE MMREMGYTSGIENYSRHMDGRQEGEPPYTLLDFFPDDFLLVIDESHVTMPQIRGMYNGDR ARKQMLVDYGFRLPSALDNRPLRLEEFEQHVNQIVYVSATPGPYEMEQTETVVQQIIRPT GLLDPEVEIRPIMGQIDDLVGEINERIEKDQRVFVTTLTKKMAEDLTDYFKELGLKVKYL HSDIKTLERTEIIRDLRLGEFDILIGINLLREGIDVPEVSLIAILDADKEGFLRSERSLV QTMGRAARNAEGKVIMYADKITDSMQRAMDETARRRAIQEAYNEEHGIEPKTIIKEIRDL ISISKTADKDETVVQLDKSYEDLSRQEKADLLMKLEREMKDAAKALDFETAATLRDTILE LKAAK >gi|284795458|gb|ADDQ01000091.1| GENE 15 17438 - 20257 3017 939 aa, chain + ## HITS:1 COG:SP0186 KEGG:ns NR:ns ## COG: SP0186 COG0178 # Protein_GI_number: 15900123 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Streptococcus pneumoniae TIGR4 # 4 935 3 937 943 1500 79.0 0 MANDKIVIHGARAHNLKNIDVTIPRDKMVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLS AYARQFLGQMDKPDVDSIDGLSPAISIDQKTTSKNPRSTVGTVTEINDYLRLLFARVGHP ICPNDHIEITSQSVEQMVDKVLELPERTKIQILAPVVVKKKGQHKKVFEMIQREGYVRMR VDGETYDVSEAPELEKNKKHDIAIVIDRIVVKEGIRSRLFDSFEAALRLAEGYAIVDVIG QEEMLFSEHYACPYCGFTVGELEPRLFSFNAPFGACPDCDGLGVKLEVDKDLVIPDPTKT LREGAIVPWNPISSQYYPQMLEQAATSFGIDMDTPFEELPADQQEIILNGSGEKNFHFHY ENDFGGVRDVEVPFEGILKNIKRRYHETNSDFTRDQMRLYMTELTCRSCQGYRLNPQALA VKINGTHIGEVSELAIKNAVQFFEGVSLSEQETTIARPILKEVEDRLTFLKNVGLDYLTL SRAAGTLSGGEAQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIDSLKKMRDLGNT LIVVEHDEDTMMASDYLIDVGPGAGHLGGEIVAAGTPEEVAKNRHSLTGQYLSGKKVIPV PKERRKGNGKAIKVTGASENNLKNVSIEFPLGEFVAVTGVSGSGKSTLVNQILKKALAQK LNRNSNKPGKHKSITGYEAIEKIVDIDQSPIGRTPRSNPATYTSVFDDIRDLFAQTNEAK VRGYKKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCHGKRYNSETLEVHYKG KNISDILDMTVEDAVEFFKHIPKIHRKLQTIVDVGLGYVTLGQPATTLSGGEAQRMKLAS ELHKNSNGKNFYILDEPTTGLHTDDIARLLLVLERLVEAGNTVLVIEHNLDVIKSADHVI DLGPEGGDGGGTIVATGTPEEVAKVKDSYTGYYLKRVLK >gi|284795458|gb|ADDQ01000091.1| GENE 16 20429 - 21223 828 264 aa, chain + ## HITS:1 COG:no KEGG:EF0764 NR:ns ## KEGG: EF0764 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 188 1 188 188 315 98.0 1e-84 MKNKKITTGLLTAGMVLAIGITPFVHSNTMEAATLISQSDHEKVMSFTKKDLKEATGIQL EPATVQAVHQELKQQITWETLGYSTIDAQNIATRFTQNTYQALGILTDIANHSDLQLKVI TINNPYLATAKIGTFKWETVTPEVGGDHETADNELTTPTPTVVSLQEIDVEIEYDENEIE FTYEIKSNGTIEATYEDESAILELEGKAAQDKIMTLLDGLSIKTATNEQIKEHITKKLAV NEQVKKFEFEANFTDKTEIEFVLK >gi|284795458|gb|ADDQ01000091.1| GENE 17 21389 - 22276 963 295 aa, chain + ## HITS:1 COG:lin2617 KEGG:ns NR:ns ## COG: lin2617 COG1660 # Protein_GI_number: 16801679 # Func_class: R General function prediction only # Function: Predicted P-loop-containing kinase # Organism: Listeria innocua # 3 290 4 290 291 374 63.0 1e-103 MPENLQLVIITGMSGAGKTVAVQSFEDMGYFCIDNLPPSLIPKFWELIKESGKVTKIALV IDLRSRTFFREIQDMLVELENTNFIDTTILFLDATDEELVSRYKETRRAHPMAMDGLVTE GIRKERAMLEEIKADAQLVIDTTDLSPRQLRERLNKELATRETHEFRVEMVSFGFKYGLP IDADIVMDVRFLPNPHYIDELRPLTGMDQPVYDYVMGFPETDEFYTKFIDLLRTVLPGYK KEGKSSVTIAIGCTGGQHRSVALTERVGAELKEEDYHVNITHRDRLKRKETVNRS >gi|284795458|gb|ADDQ01000091.1| GENE 18 22276 - 23271 1045 331 aa, chain + ## HITS:1 COG:SP1565 KEGG:ns NR:ns ## COG: SP1565 COG0391 # Protein_GI_number: 15901408 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 6 326 1 321 325 428 64.0 1e-120 MKTYRIRKPKIVVVGGGTGLPVILKSLRNQSVDITAVVTVADDGGSSGELRSSINNMTPP GDLRNVLVALSDMPQLYEDIFQYRFDKSDSHFANHAIGNLIIAAVSEMRGSTYEAIQLLS KMMHVDGRIYPSSERPLTLHAVFKDGSVAVGESKIALDRKTIDHVFVTNTHGEEQPRAAR KVVKAIEEADMVVLGPGSLFTSILPNLVITEIGEAIKQTAAEVVYICNIMTQKGETEHFT DADHVRVLNEHLQAQFVDTVLVNTEKVPENYMDPEIYDEYLVQVKHDFQGLREEGCRVIS TDFLELRDGGVFHDGEKVVEELFRIVFGTKY >gi|284795458|gb|ADDQ01000091.1| GENE 19 23305 - 24240 1052 311 aa, chain + ## HITS:1 COG:lin2615 KEGG:ns NR:ns ## COG: lin2615 COG1481 # Protein_GI_number: 16801677 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 307 1 308 323 376 64.0 1e-104 MSFASDVKKELTGLEVHREHAKAELAALIRMNGSLSLVNQQFVLNVQTENAAIARRMYSL LKDHYHAQAELLVRKKMKLKKNNVYIVRLKQDTQKILADLDIMDGVVFNGNVSNEIMGNA QKMRSYLRGAFMASGSVNNPETSRYHLEIFSIYEEHNNDICKMLNYYDLNARTLGRRNGY ICYLKGAEKIADFLTLIGATNSMLKFEDVRIVRDMRNSVNRLVNCETANLNKTIDAASKQ IENIQFIESTVGLTSLPEKLQEIAELRLEYPEVSLKELGEMIPSGAISKSGINHRIRKIN EFAEKLREKSA >gi|284795458|gb|ADDQ01000091.1| GENE 20 24629 - 25396 889 255 aa, chain + ## HITS:1 COG:no KEGG:EF0769 NR:ns ## KEGG: EF0769 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 255 53 307 307 476 99.0 1e-133 MSKAYGADMILLNVFDVNKPIVVAAYEGQYTAETCVPNDEVVHRLKELVGLPIGMNVEPV DENLDLASTRVSIEPGRKASAATFKKANELGLDFILLTGNPGTGVTNDLIAKNVALAKKH FDGIIIAGKMHSSGVDEPVVSLKSAEQFIEAGADIVLVPAVGTVWGIDDQQVKEVVDFAH SKGKLVMSAIGTSQESAQPEVIQAIGIRNKILGVDIQHIGDANMGLVGIENIKELSDAIR GKRHTVARMARSINR >gi|284795458|gb|ADDQ01000091.1| GENE 21 25508 - 26026 573 172 aa, chain + ## HITS:1 COG:lin1051 KEGG:ns NR:ns ## COG: lin1051 COG1651 # Protein_GI_number: 16800120 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Protein-disulfide isomerase # Organism: Listeria innocua # 1 171 1 171 176 204 56.0 8e-53 MDISVIDATKVNTETGLHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQFVKSGKVE RIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQDEWGNLTLEEVATYAEKN LGLKEQRDATLVSAVIAEANAAHIQFVPTIIIGEHIFDESVTEEELRGYIEK >gi|284795458|gb|ADDQ01000091.1| GENE 22 26070 - 26663 794 197 aa, chain - ## HITS:1 COG:lin2612 KEGG:ns NR:ns ## COG: lin2612 COG0740 # Protein_GI_number: 16801674 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Listeria innocua # 1 196 1 196 198 316 81.0 2e-86 MNLIPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPIDDNVANSVIAQLLFLDAQDSEKDI YLYINSPGGSVSAGLAIFDTMNFVKADVQTIVLGMAASMGSFLLTAGQKGKRFALPNAEI MIHQPLGGAQGQATEIEIAARHILDTRQRLNSILAERTGQPIEVIERDTDRDNYMTAEQA KEYGLIDEVMENSSALN >gi|284795458|gb|ADDQ01000091.1| GENE 23 26859 - 27377 496 172 aa, chain + ## HITS:1 COG:no KEGG:EF0773 NR:ns ## KEGG: EF0773 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 172 1 172 172 308 100.0 4e-83 MFVFIAGMVGVIVGALIVTASAALHSSYKERKEVRYRELEHLVKEIESLNLLNKKVKEIL QKRELYIDRSIEYLSMDDCFISIDDFIYLESFSAQNNFYLPTYLIEEFFKKIAHRKVILT ASEVAEMGGHTYKGGRVILENFSDEILAIIEDKKRKMQRLSNEPLHYFKAIK >gi|284795458|gb|ADDQ01000091.1| GENE 24 27398 - 27802 478 134 aa, chain - ## HITS:1 COG:no KEGG:EF0774 NR:ns ## KEGG: EF0774 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 134 1 134 134 244 99.0 1e-63 MNEWPHQLMTLLTPLFELCILGLNVFSIIVLVWGVCLAGKDFIKSERQNQSRFTLTKMNT FIKNFLGSYILLSLEILIAADIIESIVKPTFQDILKLATLVIIRTVISYFLHKEIEDTMT DMEQQEKEPDTPKN >gi|284795458|gb|ADDQ01000091.1| GENE 25 28267 - 29566 1477 433 aa, chain + ## HITS:1 COG:no KEGG:EF0775 NR:ns ## KEGG: EF0775 # Name: not_defined # Def: anchor protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 433 1 433 962 788 99.0 0 MFKKATKLLSTMVIVAGTVVGNFSPTLALAEGAVKAGDTEGMTNTVKVKDDSLADCKRIL EGQATFPVQAGETEPVDLVVVEDASGSFSDNFPHVRQAIDEVVQGLSDQDRVMLASYRGG KQFMFPDGKTKINSADYDMNVRVNTQLTYDKSQFVSGFGDVRTYGGTPTAPGLKLALDTY NQTHGDLTNRKTYFLLVTDGVANTRLDGYLHKTNTNDSINEYPDPRHPLQVSVEYSNDYQ GAAAEVLALNQEITNQGYEMINAYWESVESLSSVNSYFDKYKTEVGPFVKQELQQGSSTP EDFITSQSIDDFTTQLKQIVKDRLAQSTPATASLTIANQFDIQSATATDDAGNDVPVQIN GQTISATSTEGYVGNITIHYEVKENTAIDAATLVSSGTMNQGTIAKEFPEATIPKNDNAH ACDVTPEDPTITK Prediction of potential genes in microbial genomes Time: Sun May 15 13:16:16 2011 Seq name: gi|284795457|gb|ADDQ01000092.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont197.1, whole genome shotgun sequence Length of sequence - 20121 bp Number of predicted genes - 19, with homology - 19 Number of transcription units - 10, operones - 5 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 1133 1228 ## COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family - Prom 1161 - 1220 5.5 2 2 Op 1 20/0.000 - CDS 1262 - 2266 1003 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 3 2 Op 2 35/0.000 - CDS 2263 - 3198 842 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component - Term 3211 - 3239 -0.0 4 2 Op 3 . - CDS 3270 - 4070 259 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 4135 - 4194 8.2 + Prom 4052 - 4111 9.0 5 3 Tu 1 . + CDS 4306 - 5244 1200 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component + Term 5251 - 5291 7.1 - Term 5238 - 5278 7.1 6 4 Op 1 1/0.333 - CDS 5284 - 5991 979 ## COG0813 Purine-nucleoside phosphorylase 7 4 Op 2 4/0.333 - CDS 6009 - 6827 1229 ## COG0005 Purine nucleoside phosphorylase 8 4 Op 3 . - CDS 6844 - 8010 1371 ## COG1015 Phosphopentomutase - Prom 8050 - 8109 5.6 - Term 8209 - 8243 -0.4 9 5 Tu 1 . - CDS 8312 - 8905 388 ## COG3548 Predicted integral membrane protein - Prom 8938 - 8997 6.9 - Term 9131 - 9169 9.0 10 6 Op 1 26/0.000 - CDS 9181 - 10134 1132 ## COG1079 Uncharacterized ABC-type transport system, permease component 11 6 Op 2 24/0.000 - CDS 10134 - 11267 1188 ## COG4603 ABC-type uncharacterized transport system, permease component 12 6 Op 3 15/0.000 - CDS 11260 - 12828 2017 ## COG3845 ABC-type uncharacterized transport systems, ATPase components - Prom 12929 - 12988 3.8 - Term 12933 - 12976 7.1 13 7 Op 1 2/0.333 - CDS 13034 - 14119 1414 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein 14 7 Op 2 3/0.333 - CDS 14173 - 15246 1433 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein - Prom 15269 - 15328 3.3 15 8 Op 1 3/0.333 - CDS 15342 - 15737 404 ## COG0295 Cytidine deaminase 16 8 Op 2 7/0.000 - CDS 15775 - 16437 936 ## COG0274 Deoxyribose-phosphate aldolase 17 8 Op 3 1/0.333 - CDS 16465 - 17766 1770 ## COG0213 Thymidine phosphorylase - Prom 17791 - 17850 6.6 18 9 Tu 1 . - CDS 17907 - 18914 1051 ## COG1609 Transcriptional regulators - Prom 18992 - 19051 10.4 + Prom 18949 - 19008 8.4 19 10 Tu 1 . + CDS 19073 - 20086 977 ## COG1816 Adenosine deaminase Predicted protein(s) >gi|284795457|gb|ADDQ01000092.1| GENE 1 2 - 1133 1228 377 aa, chain - ## HITS:1 COG:CAC3299 KEGG:ns NR:ns ## COG: CAC3299 COG1979 # Protein_GI_number: 15896543 # Func_class: C Energy production and conversion # Function: Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family # Organism: Clostridium acetobutylicum # 1 367 1 367 389 426 56.0 1e-119 MENFNFYVPTDIRFGKDRLDELPAVLDQFGKNVLLVYGGGSIKRNGLYQQITDLAQKNGH TLIELSGVEPNPRIETVRKGIELCKENQVDVILAVGGGSTIDCSKAIAAGFYSEEDIWTV IAARKGYTGPALPIVTILTLAATGSEMNAGAVISNLETNQKLGFGGPNMIPKVSFLDPTN TFTVPKNQTAAGSADIFSHLIENYFSISTGTDVQDFVSEGLMRTVIKNCPIALENPEDYD ARANLMWASSLALNGLTGRGKQGVWSCHPMEHELSAFYDITHGIGLAILTPRWMNYVLSE QTVGKFAQFARNVWGIVEQEEEVAAKKGIQALYDYFVACGIPMTLPEVGIEADKFEEMAQ QAVAHSAIAEKAYVPLD >gi|284795457|gb|ADDQ01000092.1| GENE 2 1262 - 2266 1003 334 aa, chain - ## HITS:1 COG:SA0604 KEGG:ns NR:ns ## COG: SA0604 COG0609 # Protein_GI_number: 15926326 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Staphylococcus aureus N315 # 10 332 14 337 338 243 41.0 4e-64 MTQKKVSRWVAILIVGLILTACISLTQGELSVSVMDLKALLLGQGSQAKQLLVWDFRLPR IVLAVLAGAALGLSGAILQGITRNPLADTGILGINAGAGLAVILFISFVETTSITTFALP LVALVGGLLAAVGILVIAYHHRLGLTPVRMVLAGVILSTGISALTLLITSKIDTEKYRFV TMWQAGSIWGSNWFFVGALLPWLVIGFFFAMKRHRLLDILQLGDETAISVGIAVKKERIV SLLLAVMLAASAISVTGGINFLGLLAPHIARKCGFTQQKQVLPLAALFGSLLLLVSDTIG RLLPGNGEMPAGIIVAIIGAPYFLYLLIKTSDSL >gi|284795457|gb|ADDQ01000092.1| GENE 3 2263 - 3198 842 311 aa, chain - ## HITS:1 COG:lin2072 KEGG:ns NR:ns ## COG: lin2072 COG0609 # Protein_GI_number: 16801138 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Listeria innocua # 8 306 38 336 341 259 46.0 3e-69 MLLSLMFGATSVSIQTIIESFTHFDATNQAHQVIQTVRLPRILGAAFVGASLAVSGALAQ GITQNPLADSGLLGINAGAGLGLALVFAFLPQASYWWLLVVSFLGAGVSVALIYYLSNHS IRGASPMRLTLVGAGISALFLSFSQFLAIQFNLSQELTFWFLGGVSVISWAQLKIVVPIF LGAFALAILISPSVTILRFGDDATIGLGRNPQRIRLFASITILLLSGLSVALVGSVSFVG LVVPHVMRTVSGENYRRLIPFSALGGALLVLVADLIARMVNPPFETPFGIITALIGIPFF LYLFRKGGQLG >gi|284795457|gb|ADDQ01000092.1| GENE 4 3270 - 4070 259 266 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 4 227 2 226 245 104 30 5e-22 MNYLEAEDLTTGYGRQVISEALNCSFEAGTITSIIGPNGCGKSTLLKTLARILPAEKGKV FIKNQELQHFSSKEVAQELAILSQTPENTIDLSVFDLVSFGRYPYQSGWKSVTTEDQEYI QWALELTGLTELARESVAILSGGQRQRVWIAMALVQDTDILILDEPTTYLDPAHQLEILN VLKRINQEHQKTIVMTIHDINLASRFSDRVIAMKEGKIINEGTPQEVITVTGLADVFAIQ AEISYHSQTQRPLVLSYELMEMELDG >gi|284795457|gb|ADDQ01000092.1| GENE 5 4306 - 5244 1200 312 aa, chain + ## HITS:1 COG:alr2213 KEGG:ns NR:ns ## COG: alr2213 COG0614 # Protein_GI_number: 17229705 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Nostoc sp. PCC 7120 # 50 311 57 323 325 98 31.0 2e-20 MKLLKKTVLIGTTLLLGSFLLAACGNTNKEANNADKTHEVTDTLGNKVTVPAKPKRIIAS YLEDYLVALGEKPVAQWTVGQGSIQDYLAKELKDVPTISYDLPYEAVLKFEPDLLLISSS ALVEGGKYKEYSKIAPTYVVKNGENVTWRDQLEDIATVLDKKEQAKKVLEDYDTLTKGVQ EDLGKKDAGKSAAVLWVTNNQVFMVSDNRSSGTVLYQDLGLQVPKLVEEISKNANADWNQ VSLEKLAELDADHIFLVNSDESAPLFQEAIWKNLPAVKNNQVHTYDKKSSWLYNGPIANT QIVEDVKKALLN >gi|284795457|gb|ADDQ01000092.1| GENE 6 5284 - 5991 979 235 aa, chain - ## HITS:1 COG:L156559 KEGG:ns NR:ns ## COG: L156559 COG0813 # Protein_GI_number: 15672913 # Func_class: F Nucleotide transport and metabolism # Function: Purine-nucleoside phosphorylase # Organism: Lactococcus lactis # 4 234 5 233 234 311 67.0 6e-85 MSVHIEAKPGEIADKILLPGDPLRAKYIAETFLENPVCYNQVRGMLGYTGTYKGQRVSVQ GTGMGMPSAGIYAHELINSYDVKKLIRVGTCGSISEKVNVRELVIAQAAATPSSAIRNDF PKYDFPQIASFDLLLKSYEIAKAKGFTTHVGNVLSDDVFYKDSLDDVFRLGRYGVLAIEM EAAMLYYLAAKFDVEALAIMTVSDSLVTGEETTAEERQTTFNEMIEVGLETAIAN >gi|284795457|gb|ADDQ01000092.1| GENE 7 6009 - 6827 1229 272 aa, chain - ## HITS:1 COG:SPy0892 KEGG:ns NR:ns ## COG: SPy0892 COG0005 # Protein_GI_number: 15674917 # Func_class: F Nucleotide transport and metabolism # Function: Purine nucleoside phosphorylase # Organism: Streptococcus pyogenes M1 GAS # 3 272 2 269 269 341 64.0 7e-94 MTTLTNHLNETTEFLKEKGVQQADFGLILGSGLGELANEITDAIAIPFSEIPHFSVSTVV GHAGQLVYGTLSGKKVLAMQGRFHYYEGHSMQTVTYPVRVMAALGIHSMIVTNAAGGVNE TYTPGNLMLINDHINFTGDNPLIGENDEEIGPRFPDMSHAYTQEYREVAKKVAAEQNIDL KEGVYMGFSGPTYETPAEIRMSRTMGADAVGMSTVSEVIVAVHSGMKVLGISCITNLAAG MQSSLNHAEVVETTERVKGQFKELVKATLAAL >gi|284795457|gb|ADDQ01000092.1| GENE 8 6844 - 8010 1371 388 aa, chain - ## HITS:1 COG:SA0134 KEGG:ns NR:ns ## COG: SA0134 COG1015 # Protein_GI_number: 15925843 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphopentomutase # Organism: Staphylococcus aureus N315 # 2 388 5 392 392 545 69.0 1e-155 MFKRVHLIVLDSVGIGEAPDAEKFGDVGSDTLGHIAKEAGLTIPHLEKLGLGTIAPLTGV KAVADHDGYATKLEEISVGKDTMTGHWEIMGLNIKKPFRVFPNGFPEELLKQIEDFSGRK VVCNKPYSGTAVIDDYGEHQMKTGDLIVYTSADPVLQIAAHEDIIPLEELYKICQYVRDI TKDEPYMIGRIIARPYVGEPGNFTRTSNRHDYALDPFGHTVLDSLKENGNDVIAVGKIND IFNGQGITEAIRTKSNMDGVDQLLTVMNKDFTGLSFTNLVDFDALYGHRRDVKGYAKAIE DFDGRLPEIMAAMAEDDLLLITADHGNDPTFPGTDHTREYVPLLAYSKKMTKQGSLPQGF YSDISATIAENFEVPATENGQSFLNQLQ >gi|284795457|gb|ADDQ01000092.1| GENE 9 8312 - 8905 388 197 aa, chain - ## HITS:1 COG:L85237 KEGG:ns NR:ns ## COG: L85237 COG3548 # Protein_GI_number: 15672844 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Lactococcus lactis # 1 190 1 185 188 88 32.0 8e-18 MNKTRVEAFSDAVIAIIMTIMILEIKTPQVGVLAGLIENIPYFLSFIVSFIFICIAWYNH HYIMSVTHWFSKKAFWANNFWLFSMAFIPVATAWVSEFWWMRAPVYFYLVVYTVWDFAYF LLTRIIYEDNAVKDPQGAAKLRKSKSYSKATKIIHLCLFAIGYIGIYFYPPIGIGVILSE AVIWYLNVPKEGDRLEC >gi|284795457|gb|ADDQ01000092.1| GENE 10 9181 - 10134 1132 317 aa, chain - ## HITS:1 COG:SPy1225 KEGG:ns NR:ns ## COG: SPy1225 COG1079 # Protein_GI_number: 15675189 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 1 317 1 318 318 395 68.0 1e-110 MDLATISSIITQTLVYATPLILTALGGTFSERSGVVNVGLEGIMVMGAFSSVVFNLTFAD TFGAATPWIACLVGGVVGIVFSLLHAVATINLRADHIISGTVINLMAPALGVFLVKVIYQ KGQTDMITQSFGYFSFPGLSKIPVIGELFFAKTSLPAFVAILIAILAWFVIYKTRFGLRL RSVGEHPQAADTLGINVYLMRYSGVLLSGFLGGMGGAVFAQSIAGRFGITTIAGQGFISM AAMIFGKWNPLGAMGAALFFGFAQNLSIAGENLPIISEIPKVYLQAAPYVLTILVLVVFF GKSSGPKANGKNYVKTK >gi|284795457|gb|ADDQ01000092.1| GENE 11 10134 - 11267 1188 377 aa, chain - ## HITS:1 COG:SP0847 KEGG:ns NR:ns ## COG: SP0847 COG4603 # Protein_GI_number: 15900734 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 5 349 2 345 352 342 58.0 9e-94 MNNRSEKIRNILVPVLSVIMGFLLGAIIMVIFGYDPVAGYQAMFETAFQGKKSIGEIFVT AAPLIFTALGFSVANSAGFFNIGLSGQALCGWVASIWVALSMPDAPRMIALPVAIIVGAV AGALAAAIPGFLRAYFGTSEVIVTIMLNYILLYTGNHIANNVMKPSIMANKGITKMIGAN ASLRSPFLTSISDGSRLNIGIFLAFIFLILVWFLMKKTTLGFEIRSVGLNPFASEYAGMS SKRTIILSMMISGTLAGLGGAVQGLGTFQNFFIQNTSLSIGFDGMAVSLLGAGSSIGILL SALLFGMLKLGGQGMPLIAGVPTELVDVVIAAIIFFVGISYLIRFLLAKASGSKKEVAIV ETIEAAPDKNNQEGGDI >gi|284795457|gb|ADDQ01000092.1| GENE 12 11260 - 12828 2017 522 aa, chain - ## HITS:1 COG:SP0846 KEGG:ns NR:ns ## COG: SP0846 COG3845 # Protein_GI_number: 15900733 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport systems, ATPase components # Organism: Streptococcus pneumoniae TIGR4 # 5 512 4 511 511 673 71.0 0 MSQEENVIEMRKITKEFGTFKANDQIDLQVKPGEIHALLGENGAGKSTLMNILSGLLEPT SGEIYMNGEKVNITSPTAANRLGIGMVHQHFMLVEAFTVTENIILGSEPTHGGILDRKKA KKEIEEVSKQYGLDVNPNAYIRDISVGMQQRVEILKTLYRGANVLIFDEPTAVLTPQEID ELMIILKELTDEGKSIILITHKLDEIKKVADRCTVIRRGQSIGTVNVKDVSSQQLADMMV GRSVSFKTEKKPAQPKETILSIKDLVVKESRGLDAVKNLSLDVRAGEVVGIAGIDGNGQT ELIQALAGLTKVENGSIHLNEKEITNRKPREITEMGVAHVPEDRHKYGLVLEMTLAENIG LQTYYQKPYSSTGILNYRMINKHARELIEEYDVRTPNELVPARALSGGNQQKAIIAREVD RDPDLLIVSQPTRGLDVGAIEYIHRRLIEQRDKNKAVLLVSFELDEILNVSDRIAVIHAG EIVGIVDPKETTENELGLLMAGYSLEEARAELSKVEAGETVE >gi|284795457|gb|ADDQ01000092.1| GENE 13 13034 - 14119 1414 361 aa, chain - ## HITS:1 COG:SP0845 KEGG:ns NR:ns ## COG: SP0845 COG1744 # Protein_GI_number: 15900732 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Streptococcus pneumoniae TIGR4 # 39 359 35 350 350 297 58.0 3e-80 MKKAKLFGFSLIALGLSVSLAACGGGKGKTAESGGGKGDAAHSAVIITDTGGVDDKSFNQ SSWEGLQAWGKEHDLPEGSKGYAYIQSNDAADYTTNIDQAVSSKFNTIFGIGYLLKDAIS SAADANPDTNFVLIDDQIDGKKNVVSATFRDNEAAYLAGVAAANETKTNKVGFVGGEEGV VIDRFQAGFEKGVADAAKELGKEITVDTKYAASFADPAKGKALAAAMYQNGVDIIFHASG ATGQGVFQEAKDLNESGSGDKVWVIGVDRDQDADGKYKTKDGKEDNFTLTSTLKGVGTAV QDIANRALEDKFPGGEHLVYGLKDGGVDLTDGYLNDKTKEAVKTAKDKVISGDVKVPEKP E >gi|284795457|gb|ADDQ01000092.1| GENE 14 14173 - 15246 1433 357 aa, chain - ## HITS:1 COG:SPy1228 KEGG:ns NR:ns ## COG: SPy1228 COG1744 # Protein_GI_number: 15675192 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Streptococcus pyogenes M1 GAS # 5 356 4 350 350 292 54.0 6e-79 MKQAKFLGLGLAAVALTIGLAACGGNSKKNANTKGDPQHSVVMVTDTAGIDDKSFNQSAW EGMQEWGKEHKLPEGPQGYAYIQSNEASDYTSNIDQAISSQFKTIFGIGYLLKNAVVDAA DANPETNFVLIDDTVNGKNNVASATFRDNESAYLAGVAAANTTKTNKVGFIGGVEGPVIG RFQAGFEKGVADAGKKLGKDIQITSTYAGTFADASKGRALASSMYQAGADIIYHAAATTG QGIFQEAKALNETGSKDKVWVIGVDRDQNEDGKYTTKDGKDDNLTLASTIKGVNIAVKKI SDLALEDKFPGGEHLTYGLKDGGVDLTTEALSDQAKTAVKEAKEQIISGDVKVPDQP >gi|284795457|gb|ADDQ01000092.1| GENE 15 15342 - 15737 404 131 aa, chain - ## HITS:1 COG:SP0844 KEGG:ns NR:ns ## COG: SP0844 COG0295 # Protein_GI_number: 15900731 # Func_class: F Nucleotide transport and metabolism # Function: Cytidine deaminase # Organism: Streptococcus pneumoniae TIGR4 # 6 128 5 127 129 171 67.0 4e-43 MTVKQEWLDCAVEALAHAYVPYSNFPVGACLVTTDGKMYQGVNIENASFGLTNCAERTAI FKAISEDERTFQHLVVAGNTEAPISPCGACRQVMAEFFDPQMPVTLVGKDGATKTMTVEA LLPYSFTDKDF >gi|284795457|gb|ADDQ01000092.1| GENE 16 15775 - 16437 936 220 aa, chain - ## HITS:1 COG:L63310 KEGG:ns NR:ns ## COG: L63310 COG0274 # Protein_GI_number: 15673422 # Func_class: F Nucleotide transport and metabolism # Function: Deoxyribose-phosphate aldolase # Organism: Lactococcus lactis # 1 216 1 215 220 281 68.0 7e-76 MELNRMIDHTILKPEATEAAVQKIIDEAKEYNFFSVCINPCWVAFASEQLADTDVAVCTV IGFPLGANTPEVKAYEAADAIKNGANEVDMVINIGALKSQQYDHVRQDIQGVVDAAKGKA LVKVIIETALLTDEEKVKACELAKEAGADFVKTSTGFSTGGAKVADIRLMRETVGPDMGV KASGGVHNAEEALAMIEAGATRIGASTGVAIVSGATGEGY >gi|284795457|gb|ADDQ01000092.1| GENE 17 16465 - 17766 1770 433 aa, chain - ## HITS:1 COG:lin2101 KEGG:ns NR:ns ## COG: lin2101 COG0213 # Protein_GI_number: 16801167 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine phosphorylase # Organism: Listeria innocua # 1 433 1 433 433 541 69.0 1e-153 MRMVDIIEKKRDGHQLTSEEIQFIINGYTDGSIPDYQVSAFLMAVFYQDMTDEEITQMTL AMVHSGEIVDLSSIEGIKVDKHSTGGVGDTTTLILAPLVASVGVNVAKMSGRGLGYTGGT LDKLEAIPGFKVELTEERFIQLVNDTKVAVIGQSGDLAPADKKLYALRDVTATVDSIPLI ASSIMSKKIAAGADAIVLDVTTGEGAFMKDLASARRLAETMVRIGKLANRQTMAVISDMS QPLGEAIGNSLEIVEAIETLQGNGPEDLVEMCYVLGSQMVVLAKKAETLDEARALLEEAL TSGRALAKFKEMIENQGGDSSVVDQPEKLLTAIYQFDLPAKETGVVQKIVANEIGVAAML LGAGRATKEDTIDFAVGLKLHKKVGSPVEKGESLLTIYANREDVTEVEQLLYKNIEIGPT GEEPILIHDIITE >gi|284795457|gb|ADDQ01000092.1| GENE 18 17907 - 18914 1051 335 aa, chain - ## HITS:1 COG:lin2102 KEGG:ns NR:ns ## COG: lin2102 COG1609 # Protein_GI_number: 16801168 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 335 1 333 336 321 47.0 1e-87 MKLTIKEIADMAGVSVTTVSQILNNKGSRFSEKTRNKVLAVVAENHYKPDYFASNVINRH SKTIGMIVPDVTDFFFSKVIEGVETYLNSLGYMILLCNSKHDSEQAMQYVSELIHRSVDG IIFATPNVLPENHILKDRREHPIPVILVDRGINPRDSGRLIVKEYEGAYQAVHHLIQQGH QHIGMLRESAGYYRLTERVTAYQHALQDNNLPFRPHYVCAGELNLHGGYAAAKEVLKNEE ITAIFCGNDEMAMGAYQAIEEAGKKIPDDISVVGFDGLEISEYLVPSLTTVYQPSFDIGY YAAKFLVEAIADPTGKVPNKVFDATFIARKSTKPI >gi|284795457|gb|ADDQ01000092.1| GENE 19 19073 - 20086 977 337 aa, chain + ## HITS:1 COG:L87453 KEGG:ns NR:ns ## COG: L87453 COG1816 # Protein_GI_number: 15672269 # Func_class: F Nucleotide transport and metabolism # Function: Adenosine deaminase # Organism: Lactococcus lactis # 6 335 15 347 352 289 43.0 6e-78 MEESRVRQLPKIELHCHLDGSIRPTTLRTIAEKQNIPLPQDEQALKELVVAPEKCTDLND YLTRFDFVLTCLQTAEALQAAAYDVISQAAEDGVAYIEVRFAPSQHTEKGLRLPEIVTAV LTGLKQGEEDFGVKSNALLCGMRHDQQQAIEKIVHLAHDFRETGVVGFDLAGNEVDFPPY TFEDVLALANQLSIPLTLHAGECGCGKNVADAVTLGATRIGHGIALKDTPEYLALLKEKK VLLEMCPTSNFQTGTVKTLAEYPFQQFIEAGLAVCINTDNRTVSDTTLTKEFMKLATWYQ LSYDEMKQLTKNALAGAFLSPDEKKLLNQKIDQAYLF Prediction of potential genes in microbial genomes Time: Sun May 15 13:16:20 2011 Seq name: gi|284795456|gb|ADDQ01000093.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont197.2, whole genome shotgun sequence Length of sequence - 5627 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 5, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 40 - 648 727 ## COG2813 16S RNA G1207 methylase RsmC 2 1 Op 2 . - CDS 663 - 1250 753 ## COG2755 Lysophospholipase L1 and related esterases - Prom 1280 - 1339 4.0 + Prom 1287 - 1346 5.6 3 2 Tu 1 . + CDS 1405 - 2328 951 ## COG1072 Panthothenate kinase + Prom 2373 - 2432 5.5 4 3 Tu 1 . + CDS 2640 - 4202 1671 ## COG0519 GMP synthase, PP-ATPase domain/subunit + Term 4210 - 4260 16.1 + Prom 4272 - 4331 6.3 5 4 Tu 1 . + CDS 4385 - 4669 200 ## EF0124 hypothetical protein + Prom 4685 - 4744 10.3 6 5 Tu 1 . + CDS 4772 - 5627 717 ## COG5492 Bacterial surface proteins containing Ig-like domains Predicted protein(s) >gi|284795456|gb|ADDQ01000093.1| GENE 1 40 - 648 727 202 aa, chain - ## HITS:1 COG:lin0284 KEGG:ns NR:ns ## COG: lin0284 COG2813 # Protein_GI_number: 16799361 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S RNA G1207 methylase RsmC # Organism: Listeria innocua # 3 199 4 200 201 229 57.0 3e-60 MANHYYTENPELAHDLESWSFPLRGRTFQFTTDSGVFSRGTVDYGSRVLIDAFEWENLPS GRLLDVGCGYGPIGLSLAAATGRLVEMVDVNQRAVGLAQMNAQRNQITTVDIHSSNVYET LNETTYAAIVSNPPIRAGKKVVHGILTGAFPLLKVGGTLTVVIQKKQGAPSAEKKMAEVF GNVEIVTKDKGYYILRSVKEAE >gi|284795456|gb|ADDQ01000093.1| GENE 2 663 - 1250 753 195 aa, chain - ## HITS:1 COG:L161059 KEGG:ns NR:ns ## COG: L161059 COG2755 # Protein_GI_number: 15673705 # Func_class: E Amino acid transport and metabolism # Function: Lysophospholipase L1 and related esterases # Organism: Lactococcus lactis # 3 191 8 189 191 101 39.0 1e-21 MRKIVLFGDSITASYLDEAVSPVLVDLVKRDIAAMGLEEVAVINAGMPGDTTEDGLKRLN KEVLIEKPDEVVIFFGANDASLDRNITVATFRENLETMIHEIGSEKVILITPPYADSGRR PERPQTRIKELVKVAQEVGAAHNLPVIDLYKAMTVYPGTDEFLQADGLHFSQVGYELLGA LIVREIKGRLKPKQA >gi|284795456|gb|ADDQ01000093.1| GENE 3 1405 - 2328 951 307 aa, chain + ## HITS:1 COG:L66222 KEGG:ns NR:ns ## COG: L66222 COG1072 # Protein_GI_number: 15673426 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate kinase # Organism: Lactococcus lactis # 1 307 1 306 306 347 56.0 1e-95 MDDKMNYYPISREEWHGFYHDGKAPLTEAELDNIKSVNDQISLKDVQEIYVPLTHLIHLY MKEFESLTLSKGLFLHEYVSVPPFIIGIAGSVAVGKSTTARLLQRILARTFKRRNVQLIT TDGFLYPNKVLEEQGIMDRKGFPESYDMEKLINFLNEVKSGKDEIKAPVYSHSVYDVIEG EYELIQQPDILIVEGINTLQLPANQQIYVSDFFDFSIFVDADPALIEKWYLERFGALLDT AFLDPNNYYYQYAIGKREDAFAMARNVWKTVNLPNLEEYILPTRGRADIILHKTENHLID QIYLRKY >gi|284795456|gb|ADDQ01000093.1| GENE 4 2640 - 4202 1671 520 aa, chain + ## HITS:1 COG:SP1445_2 KEGG:ns NR:ns ## COG: SP1445_2 COG0519 # Protein_GI_number: 15901295 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase, PP-ATPase domain/subunit # Organism: Streptococcus pneumoniae TIGR4 # 202 520 1 316 316 568 87.0 1e-162 MTNVADLTSVEKIIVLDFGSQFNQLITRRIREFGVFSELLSHRTTAEEIRKIAPKGIIFS GGPNSVYDKDAFSIDPEIYELGIPILGICYGMQLMTHNLGGKVEPAANREYGKAELEILG DATLFQGTPAKQTVWMSHGDLVTEIAPGFEKVGTSNDCPIASIEDANRKFYGVQFHPEVR HSEYGNDLLRHFAFEVCGCTGDWSMENFIDMEVAKIREQVGDKKVLLGLSGGVDSSVVGV LLQKAIGDQLTCIFVDHGLLRKGEAEQVMESLGGKFGLNIIKVDAKERFLSKLAGVSDPE QKRKIIGNEFVYVFDDEATKLAGEEGVSFLAQGTLYTDVIESGTETAQTIKSHHNVGGLP EDMQFELIEPLNTLFKDEVRALGTELGMPDAIVWRQPFPGPGLGIRVLGEITEDKLQIVR DSDAILREEIAAAGLDRDIWQYFTVLPGIRSVGVMGDGRTYDYTVGIRAVTSIDGMTADF ARIPWDVLQKISVRIVNEVAHVNRIVYDITSKPPATVEWE >gi|284795456|gb|ADDQ01000093.1| GENE 5 4385 - 4669 200 94 aa, chain + ## HITS:1 COG:no KEGG:EF0124 NR:ns ## KEGG: EF0124 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 94 26 119 119 107 97.0 2e-22 MSKETFLKYGFVVLFIGIFLLRAQKFISEPLSYLFSGILLLIVAYLILVKKMNFFSSLLT VTNQPSSTQQRLGQLSGLVSLLIGLLLVIFSVIL >gi|284795456|gb|ADDQ01000093.1| GENE 6 4772 - 5627 717 285 aa, chain + ## HITS:1 COG:CAC3279_1 KEGG:ns NR:ns ## COG: CAC3279_1 COG5492 # Protein_GI_number: 15896524 # Func_class: N Cell motility # Function: Bacterial surface proteins containing Ig-like domains # Organism: Clostridium acetobutylicum # 80 261 212 391 482 119 35.0 6e-27 MKKSVITSSMLAVLLSGFLVTPISAYALERSKGTTEETVASETSLTEQQMSSGVTEEMNP SIINSQEETETTSTSSTSDSTTEVSTSEVTTVNDTENSSDDTETTLETSQSNEDTPVAPA KAEEKVPDINYQTHIQDIGWQGVVKNGEISGTSRRSLRLEGIKMNISNSDLAGSVEYRTH VQEIGWQGYVKDNQLSGTSGKSLRLEAIQIRLTGEIANAYDVYYRVHIEDKGWLNWAKNS ESAGSQSAAKRLEAIQIKLVKKGEAAPEGSGKAFLIGNEAKRPDE Prediction of potential genes in microbial genomes Time: Sun May 15 13:16:22 2011 Seq name: gi|284795455|gb|ADDQ01000094.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont206.1, whole genome shotgun sequence Length of sequence - 792 bp Number of predicted genes - 2, with homology - 1 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 80 - 145 61 ## - Prom 181 - 240 9.1 + Prom 113 - 172 9.4 2 2 Tu 1 . + CDS 213 - 767 537 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs Predicted protein(s) >gi|284795455|gb|ADDQ01000094.1| GENE 1 80 - 145 61 21 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKERILVLDLLKKHLEKAGK >gi|284795455|gb|ADDQ01000094.1| GENE 2 213 - 767 537 184 aa, chain + ## HITS:1 COG:XF2028 KEGG:ns NR:ns ## COG: XF2028 COG1961 # Protein_GI_number: 15838622 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Xylella fastidiosa 9a5c # 1 165 1 155 185 160 50.0 1e-39 MIFGYARVSTDDQNLSLQIDALTHYGIDKLFQEKVTGAKKDRPQLEEMINLLREGDSVVI YKLDRISRSTKHLIELSELFEELSVNFISIQDNVDTSTSMGRFFFRVMASLAELERDIII ERTNSGLKAARVRGKKGGRPSKGKLSIDLALKMYDSKEYSIRQILDASKLSKTTFYRYLN KRNA Prediction of potential genes in microbial genomes Time: Sun May 15 13:16:26 2011 Seq name: gi|284795454|gb|ADDQ01000095.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont207.1, whole genome shotgun sequence Length of sequence - 1286 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 1285 1129 ## EF_B0011 aggregation substance PrgB Predicted protein(s) >gi|284795454|gb|ADDQ01000095.1| GENE 1 1 - 1285 1129 428 aa, chain - ## HITS:1 COG:no KEGG:EF_B0011 NR:ns ## KEGG: EF_B0011 # Name: prgB # Def: aggregation substance PrgB # Organism: E.faecalis # Pathway: not_defined # 2 428 160 586 1305 729 96.0 0 PKEFETPDVDKAVDEAKKDPNITVVEKPVEDLGNVSSKDLATKEKEVDQLQKEQAKKIAQ QAAELKAKNEKIAKENAEIAAKNKVEKERYEKEVAEYNKHKNENSYVNEAISKNLVFDQS VVTKDTKISSIKGGKFIKATDFNKVNAGDSKDIFTKLRKDMGGKATGNFQNSFVKEVNLG ANGGYAVLLEKNKPVTVTYTGLNASYLGRKITKAEFVYELQSSPSQSGTLNAVFSNDPII TAFIGTNRVNGKDVKTRLTIKFFDASGKEVLPDKASPFAYALSSLNSSLTNKGGHAEFVS DFRANNTFKYINGSYVKKQADGKFYSPEDIDYGTGPSGLKNSDWDAVGHKNAYFGSGVGL ANGRISFSFGMTTKGKSNVPVSSAQWFAFSTNLNAKSVTPKRQFNSPKEPEKATIEFNGY KANVVPVL Prediction of potential genes in microbial genomes Time: Sun May 15 13:16:32 2011 Seq name: gi|284795453|gb|ADDQ01000096.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont207.2, whole genome shotgun sequence Length of sequence - 668 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 477 487 ## EF0485 aggregation substance - Prom 575 - 634 5.3 Predicted protein(s) >gi|284795453|gb|ADDQ01000096.1| GENE 1 3 - 477 487 158 aa, chain - ## HITS:1 COG:no KEGG:EF0485 NR:ns ## KEGG: EF0485 # Name: not_defined # Def: aggregation substance # Organism: E.faecalis # Pathway: not_defined # 1 158 1 166 1305 214 80.0 6e-55 MKQQMKAKKQYKTYKAKNHWVNVPILFLSVLGAVGLATNNVQAAELDTQPETISIQSDNH NSQTVSETTVQKDTTSQPTKVEEVASEKNGAEQSSATPNDTTNVQQPTVGAEKSAAQEQP VVSPEATNEPLGQPTEVAPTENDANKSTTIPKEFETPD Prediction of potential genes in microbial genomes Time: Sun May 15 13:16:35 2011 Seq name: gi|284795452|gb|ADDQ01000097.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont208.1, whole genome shotgun sequence Length of sequence - 534 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 46 - 165 182 ## EFA0047 aggregation substance Asa1 + Term 174 - 218 8.5 + Prom 175 - 234 2.2 2 1 Op 2 . + CDS 260 - 533 292 ## EF0486 hypothetical protein Predicted protein(s) >gi|284795452|gb|ADDQ01000097.1| GENE 1 46 - 165 182 39 aa, chain + ## HITS:1 COG:no KEGG:EFA0047 NR:ns ## KEGG: EFA0047 # Name: asa1 # Def: aggregation substance Asa1 # Organism: E.faecalis # Pathway: not_defined # 1 39 1258 1296 1296 74 92.0 1e-12 MPELPQTGEKQNVLLTVAGSLVTMLGLAGLGFKRRKETK >gi|284795452|gb|ADDQ01000097.1| GENE 2 260 - 533 292 91 aa, chain + ## HITS:1 COG:no KEGG:EF0486 NR:ns ## KEGG: EF0486 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 91 13 103 118 161 100.0 6e-39 MKEIAIQEKDLTLQWRGNTGKLVKVRLKNTRAMEMWYNKQITEENIQEITTLNIIKNGKS LALEVYPEKSIYVKPNLGRINVPVFFIKTPI Prediction of potential genes in microbial genomes Time: Sun May 15 13:16:47 2011 Seq name: gi|284795451|gb|ADDQ01000098.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont209.1, whole genome shotgun sequence Length of sequence - 27062 bp Number of predicted genes - 25, with homology - 24 Number of transcription units - 8, operones - 6 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 37 - 96 5.7 1 1 Tu 1 . + CDS 161 - 883 623 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Term 889 - 930 8.5 - Term 878 - 916 3.1 2 2 Op 1 1/0.000 - CDS 927 - 1622 865 ## COG1802 Transcriptional regulators - Prom 1660 - 1719 8.2 - Term 1700 - 1744 4.8 3 2 Op 2 . - CDS 1756 - 3153 1689 ## COG2851 H+/citrate symporter - Prom 3306 - 3365 7.5 + Prom 3423 - 3482 3.6 4 3 Op 1 . + CDS 3547 - 3909 367 ## EF3326 hypothetical protein 5 3 Op 2 9/0.000 + CDS 3893 - 4294 541 ## COG0511 Biotin carboxyl carrier protein 6 3 Op 3 . + CDS 4324 - 5439 1484 ## COG1883 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit 7 3 Op 4 . + CDS 5461 - 5595 243 ## EF3323 hypothetical protein 8 3 Op 5 5/0.000 + CDS 5610 - 6620 1023 ## COG3053 Citrate lyase synthetase 9 3 Op 6 6/0.000 + CDS 6626 - 6934 398 ## COG3052 Citrate lyase, gamma subunit 10 3 Op 7 6/0.000 + CDS 6922 - 7809 1128 ## COG2301 Citrate lyase beta subunit 11 3 Op 8 7/0.000 + CDS 7812 - 9344 1877 ## COG3051 Citrate lyase, alpha subunit 12 3 Op 9 1/0.000 + CDS 9325 - 9873 531 ## COG3697 Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) 13 3 Op 10 . + CDS 9866 - 11263 1685 ## COG5016 Pyruvate/oxaloacetate carboxyltransferase + Term 11300 - 11344 8.2 14 4 Op 1 . + CDS 11380 - 12552 1200 ## COG0281 Malic enzyme 15 4 Op 2 . + CDS 12559 - 13428 922 ## COG1767 Triphosphoribosyl-dephospho-CoA synthetase 16 4 Op 3 . + CDS 13413 - 13586 129 ## gi|256960897|ref|ZP_05565068.1| predicted protein + Term 13625 - 13657 4.2 + Prom 14031 - 14090 7.6 17 5 Tu 1 . + CDS 14218 - 18594 5459 ## COG1404 Subtilisin-like serine proteases + Term 18616 - 18681 16.5 + Prom 18663 - 18722 6.9 18 6 Op 1 11/0.000 + CDS 18827 - 20224 1841 ## COG0486 Predicted GTPase 19 6 Op 2 . + CDS 20244 - 22142 2297 ## COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division + Prom 22305 - 22364 11.4 20 7 Op 1 . + CDS 22428 - 22541 124 ## 21 7 Op 2 . + CDS 22544 - 23188 556 ## L80315 hypothetical protein + Term 23280 - 23341 18.0 + Prom 23313 - 23372 8.1 22 8 Op 1 . + CDS 23442 - 24242 1016 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 23 8 Op 2 . + CDS 24258 - 26120 1778 ## COG3711 Transcriptional antiterminator 24 8 Op 3 . + CDS 26117 - 26602 506 ## EF3308 transcriptional regulator SrlR 25 8 Op 4 . + CDS 26602 - 27061 512 ## COG3730 Phosphotransferase system sorbitol-specific component IIC Predicted protein(s) >gi|284795451|gb|ADDQ01000098.1| GENE 1 161 - 883 623 240 aa, chain + ## HITS:1 COG:BH0820 KEGG:ns NR:ns ## COG: BH0820 COG0745 # Protein_GI_number: 15613383 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus halodurans # 1 229 1 228 234 131 33.0 1e-30 MRTEKILVVDDDAAVRRLIWKALQSTGILIYQSESIEKTKDIVSRVTFDLFILDDNLEHD SDGYYLVQMIREKYPLVPIIFFSSKKEEEDIIAALEMGVDSYITKPFSLNVFKAQVIASL NRARMIRKQLNIYKKEELQVGDFRFDYGRYQLFKKDLPISLSSKEVQLIQFFLENPEQVF SKEQIYSSVWGTGDVDANTIMVFINRLRSKLEENPKEPCYLRTVWGIGYTFTPDGCVQKK >gi|284795451|gb|ADDQ01000098.1| GENE 2 927 - 1622 865 231 aa, chain - ## HITS:1 COG:SPy1179 KEGG:ns NR:ns ## COG: SPy1179 COG1802 # Protein_GI_number: 15675151 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 229 1 229 231 258 61.0 5e-69 MNPTVEAVKRNLDLTSSKPLKICTYEAFKKTIILGDIPAGERINEKEFSEQLNISRTPIR FALQELVKEQLVEHIPMVGIVVKGISMKDAYEIYDIRKSLDTLATIKAMELMTPEDFDEL EALLLEGEQYNKNNQVDDLLQNFSDFNSFIYTKSQMLRLKKIVTDLHAYLIYFRDIAIRA SERRSIALEEHWLIFRGMKTKNIDQITLLTHEHLNRSLQFILKEMERRQIE >gi|284795451|gb|ADDQ01000098.1| GENE 3 1756 - 3153 1689 465 aa, chain - ## HITS:1 COG:SPy1180 KEGG:ns NR:ns ## COG: SPy1180 COG2851 # Protein_GI_number: 15675152 # Func_class: C Energy production and conversion # Function: H+/citrate symporter # Organism: Streptococcus pyogenes M1 GAS # 1 464 2 468 468 588 74.0 1e-168 MLLTILAYGMIIIFMYVIMKKKLSPFTSLVIIPLIFTLIAIATGVASPPPGADGVVPEVN IGNFVLDGISTTSKTGIMLLFAILYFSIMLDAGLFDPITKKMIYFAKGDPMKVLMATAVV AAAVSLNGDGTTTTLICCSAFIPIYKKLNMKLMNLGVLVILQNTIMNLLPWGGPTARAMA VLEVDADILSYLAPGMILSVLYVIFFVAYRMGKKERARLGVTTLTDKELEEMTIVNDPEL LEIRRPKNFAFNGILTIVLIGWLVLSSFVGQLGLPSWIEMPPLLLFLVGTCIALMINYPK LKDQSSRISANAGDAVQVVILVFAAGVFMGLFQGSGMANALANSFVNIIPKQLAGAWGLV IAFISAPGTFFISNDGFYFGVLPVLAEAGRSYGFDNMSMALASLMGQAFHLLSPLVAFIY LLLRLTGLDMGQWQKESAKYALGIFVIFVVTIVALGHMPLFIPQN >gi|284795451|gb|ADDQ01000098.1| GENE 4 3547 - 3909 367 120 aa, chain + ## HITS:1 COG:no KEGG:EF3326 NR:ns ## KEGG: EF3326 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 120 1 120 120 177 100.0 8e-44 MGLFKSLFKKEQHTQDTEINESVIQREADNLEKRWIDIPAYIPAEPKEYQLVSIVATAIA AGEFPESRFVIKKIAKRNPEAKEVAIIAASIAAELSEESQLVVKRISKQNLEEDHYVTQI >gi|284795451|gb|ADDQ01000098.1| GENE 5 3893 - 4294 541 133 aa, chain + ## HITS:1 COG:SPy1183 KEGG:ns NR:ns ## COG: SPy1183 COG0511 # Protein_GI_number: 15675154 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxyl carrier protein # Organism: Streptococcus pyogenes M1 GAS # 1 132 2 131 132 120 68.0 6e-28 MLRKFKISIDGKEYLVEMEEIGGVPQPAPVALQPTAPVATTETPAPAVEEAPAPAAQPAA PAGADAMPAPMPGTVLKVLVNVGDTVSENQPLLILEAMKMENEIVAGKAGTVTGIHVTQG QIVNPGEPLITIN >gi|284795451|gb|ADDQ01000098.1| GENE 6 4324 - 5439 1484 371 aa, chain + ## HITS:1 COG:SPy1184 KEGG:ns NR:ns ## COG: SPy1184 COG1883 # Protein_GI_number: 15675155 # Func_class: C Energy production and conversion # Function: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 371 1 373 373 463 77.0 1e-130 METLIQGVIGMGQEPGRIVMMLIGGLLMYLGIKKEYEPTLLVPMGLGTILVNFPNSGVLS AGGEPGPFNVLFDFGIKTELFPLLLFIGIGAMIDFGPLLQNPFMLMFGAAAQFGIFFTVI MAVLLGFDLNDAASIGIIGAADGPTSIFVANTLHSKYMGAIMVAAYSYMALVPIIQPVAI KAVTTKAERRIRMTYRAGEVSQTAKILFPVVITIVAGLIAPVSLPLVGFLMFGNLLRECG VLDRLSITAQNELVNIISILLGLSISVSMNYAEFLKVDTLMVIGLGLVAFIMDSVGGVLF AKFLNLFRKEKINPMIGAAGISAFPMSSRVIQKMATDEDPQNFILMHAAGANVSGQIASV IAGGLLLAFLT >gi|284795451|gb|ADDQ01000098.1| GENE 7 5461 - 5595 243 44 aa, chain + ## HITS:1 COG:no KEGG:EF3323 NR:ns ## KEGG: EF3323 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 44 1 44 44 66 100.0 3e-10 MSVNMEDLKIAFELLGFGWGGVFVVLFIIYLASKLLTKLFPIKK >gi|284795451|gb|ADDQ01000098.1| GENE 8 5610 - 6620 1023 336 aa, chain + ## HITS:1 COG:FN0319 KEGG:ns NR:ns ## COG: FN0319 COG3053 # Protein_GI_number: 19703664 # Func_class: C Energy production and conversion # Function: Citrate lyase synthetase # Organism: Fusobacterium nucleatum # 15 329 10 325 345 232 41.0 1e-60 MNSVYTMKRIWLQKDKKAYQAWRELMEKAALQTTEALDYTVGIYDDTALIASGSLSGKTI KCVAVCKKYQSENLLTQLVVHLLEKLREENQLHSFLYTKPKNEQIFQSLGFQKVVANQEV LFMEQGKPDFADYLGYLTQHKKAGPASSIVMNANPFTKGHQYLVEKAAKESPHVYVFVLS EDKSLFSKEARFAMVQKGVAHLPNVTVLSTEDYLVSSATFPTYFLKEKAPLEVAAIQATL DATLFKERIAPILEIQQRYVGEEPYSEVTDVYNQAMQQVFGQTITLTIVPRLAIGGELIS ATKVRKAMAEGDKETLKKFLPATSYQYLVEHKKLMR >gi|284795451|gb|ADDQ01000098.1| GENE 9 6626 - 6934 398 102 aa, chain + ## HITS:1 COG:SPy1186 KEGG:ns NR:ns ## COG: SPy1186 COG3052 # Protein_GI_number: 15675156 # Func_class: C Energy production and conversion # Function: Citrate lyase, gamma subunit # Organism: Streptococcus pyogenes M1 GAS # 1 102 1 102 102 109 59.0 1e-24 MKIIKNATAGTVESSDIMITVQPIESTENTIELESSVEKQFGNQIRQVITTTLEHLDVQG VAVKAIDKGALDCTIKARMITVLHRGAEKETYDWKELDSWNV >gi|284795451|gb|ADDQ01000098.1| GENE 10 6922 - 7809 1128 295 aa, chain + ## HITS:1 COG:SPy1188 KEGG:ns NR:ns ## COG: SPy1188 COG2301 # Protein_GI_number: 15675157 # Func_class: G Carbohydrate transport and metabolism # Function: Citrate lyase beta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 295 1 295 295 436 83.0 1e-122 MERLRRTMMFVPGANAAMLRDAPLYGADSIMFDLEDAVSLKEKDSARVLVHSALKTFDYG NIEIVVRINALDAGGAEDIEAMVLAGVDVIRLPKTETAQDIIDVEAVITEVEQQNDIPVG TTKMMAAIESAEGVLNAPAIAKSSTRLIGIALGAEDYVTNMKTRRHPDGQELFFARSMIL HAARAAGIAAIDTVYSDVDNTEGFEAEVRLIKQLGFDGKSVINPRQIPLVNTIYAPTEKE IQNAKEVIWGIREAEAKGSGVISVNGKMVDKPIVERAERVIALALAAKLITEEEI >gi|284795451|gb|ADDQ01000098.1| GENE 11 7812 - 9344 1877 510 aa, chain + ## HITS:1 COG:SPy1189 KEGG:ns NR:ns ## COG: SPy1189 COG3051 # Protein_GI_number: 15675158 # Func_class: C Energy production and conversion # Function: Citrate lyase, alpha subunit # Organism: Streptococcus pyogenes M1 GAS # 1 510 1 510 510 842 84.0 0 MVVNKVGKDIPQSYAEQYGIYEGELAHIDAYQEASRAIKPVKPRETKLLGSIREAIEKTG LKDGMTISFHHHFREGDYVMNLVLAEIAAMGLKNISIAPSSIANVHEPLIEHIKNGVVTN ITSSGLRDKVGAAISAGIMENPVVIRSHGGRARAVAAGDIHIDVAFLGAPSSDAYGNANG TKGKATCGSLGYAMVDAKYADQVVIITDTLVPYPNTPISIPQTDVDYVVEIDAIGDPDGI AKGATRFTKNPKELLIAEYAAKIITHSPYYKEGFSFQTGTGGSSLAVTRFMREQMLKDGI KASFALGGITNAMVELLEEGLVEKIIDVQDFDHPSAISLGENANHYEIDANMYASPLSKG AVINQLDTAILSALEVDTDFNVNVITGSDGVIRGASGGHSDTSMACKMSLVIAPLVRGRI PTIVEQVNTVVTPGTSVDVVVTEVGIAINPKRTDLIDCFKTLDVPQFTLEELKDKAYNIV GTPEPIKYGDKVVALIEYRDGSLIDVVRNV >gi|284795451|gb|ADDQ01000098.1| GENE 12 9325 - 9873 531 182 aa, chain + ## HITS:1 COG:SPy1190 KEGG:ns NR:ns ## COG: SPy1190 COG3697 # Protein_GI_number: 15675159 # Func_class: H Coenzyme transport and metabolism; I Lipid transport and metabolism # Function: Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) # Organism: Streptococcus pyogenes M1 GAS # 6 173 7 175 192 144 47.0 1e-34 MWYAMFNGEKVTLLEMLDAREQRAATQKELLETAPEASLLSATMNIPGEVKNSPTLTAVF LEVIDEVEQQLLDQVPIVNFYRNEKTGPEYYLAVSLAPQELKQRMVKIEETHPYGRLVDL DVLWGNEELKSLHRGDLGLPPRRCFICQEEAKVCGRNRRHSLEAMQEKITEIILTRKEQP SE >gi|284795451|gb|ADDQ01000098.1| GENE 13 9866 - 11263 1685 465 aa, chain + ## HITS:1 COG:SPy1191 KEGG:ns NR:ns ## COG: SPy1191 COG5016 # Protein_GI_number: 15675160 # Func_class: C Energy production and conversion # Function: Pyruvate/oxaloacetate carboxyltransferase # Organism: Streptococcus pyogenes M1 GAS # 4 465 8 469 469 743 78.0 0 MSKKIRFTETVLRDGQQSLIATRMPTSDMLPIIKTMDEAGFHALEMWGGATFDSCVRYLN EDPWERLRQIRKEVKNTKLQMLLRGQNLLGYRHYADDVVRAFVEKSVENGIDIIRIFDAL NDVRNLQTAIQTTKEAGGYCQAAISYTTSEIHTIDYFVKLAKELSQTGADSICIKDMAGV LTPQTGFELVSKMKDAIDLPLEVHTHATSGISEMTYLKVAEAGADIIDTAISSFAGGTSQ PATESVAIALEDLGFETGLNMEKVTEIADYFNPIRDRFRSEGILNPKVKDTEPKTLIYQV PGGMLSNLLSQLTEQGLQDKYEEVLAEVPKVRADLGYPPLVTPLSQMVGTQALMNVISGE RYSLIPNEIKDYVRGEYGKSPAPIAEEIKQKIIGDEEVITCRPADLLKPELHSLEKEIQQ YAKSEEDVLLYAMFPQQGKDFLGRREDPFYDVPLQKVTVKLDLPE >gi|284795451|gb|ADDQ01000098.1| GENE 14 11380 - 12552 1200 390 aa, chain + ## HITS:1 COG:L3227 KEGG:ns NR:ns ## COG: L3227 COG0281 # Protein_GI_number: 15673168 # Func_class: C Energy production and conversion # Function: Malic enzyme # Organism: Lactococcus lactis # 2 380 4 380 380 381 55.0 1e-105 MLEEVLAIHQKNIGVLSLEATEAVLNHHDLAKMYTPGVAELSLMIAKNHELAREWTISGK LIAVITDGSAVLGLGNMGTQAGLPIVEGKALLYKNLAGVDAIPLALEQKSVDEMVQTIEN LQNSFAGIHLEDISAPKCFEIEEKLQQRLNIPVYHDDQEGTAIVVLAGLINAAKIKGKPL NQLRVVINGVGASGVATAKLCIQAGITHLTLVDRQGVLREEDPTLNPYQRALLRQVIKPS VENKDLATAVVNQDVFLGLSEADVLTPALIESMNQDPIIFALANPKPEIEPALAQANGVR LLATGSSKYPNQVNNILAFPGLFKGLLAAKGRKVDVGLQMTVARSLAAMISEPTAEKFIP NVFDGGVVDTVFNAVLDYIKQEKATAEEGT >gi|284795451|gb|ADDQ01000098.1| GENE 15 12559 - 13428 922 289 aa, chain + ## HITS:1 COG:VC0801 KEGG:ns NR:ns ## COG: VC0801 COG1767 # Protein_GI_number: 15640819 # Func_class: H Coenzyme transport and metabolism # Function: Triphosphoribosyl-dephospho-CoA synthetase # Organism: Vibrio cholerae # 16 284 39 308 313 155 37.0 1e-37 MTKQARSKLAQQAQLALLYEVTCLNKPGLVDPVDAGAHQDMDVFTFLESSVVLTPYFETF VQAGTELRHLPIEATFRAIRQVGLEAERAMFEATEGINTHKGAIFSLGIFLAICGRLMIW ETPCTLQLFQQTLQTMTQDLLADFENLATNELEKLTWGERLFVQHGLTGIRGEAQQGYPA VFEQGVPYYQKHQGTQQQKLIDTLLYLSLYVEDTNLIKRSQNVQIFEVYQPLIQEYFALG GTQTLRGTLCLERLNHLFKEKNWSIGGSADALILVVFLDKLMKLNWLTP >gi|284795451|gb|ADDQ01000098.1| GENE 16 13413 - 13586 129 57 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256960897|ref|ZP_05565068.1| ## NR: gi|256960897|ref|ZP_05565068.1| predicted protein [Enterococcus faecalis Merz96] # 1 57 1 57 57 90 100.0 2e-17 MADALIKKIVTTLILPVILTLYAYGKVSREFKKAIDKYHETQYILLRNHSYQSIQIR >gi|284795451|gb|ADDQ01000098.1| GENE 17 14218 - 18594 5459 1458 aa, chain + ## HITS:1 COG:BH2080 KEGG:ns NR:ns ## COG: BH2080 COG1404 # Protein_GI_number: 15614643 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus halodurans # 462 788 741 1047 1052 110 31.0 2e-23 MKKKIVEDFNRKSQHKKWTKRKMLNLAISSGLLFTSLAIPVSIAVTSGTISASAAVLDIE LLSNVTSNNDSGTSTSNRWTAANQNQPVNFTVSGGALADASAVFSGQKQAVLVVPPELRG NVAAAGSAAINTNVTIDLSKVTFLTAVLNAANDLTNVITQITSGALGNLTGVDIDLTEVN RQLELVNNIENLGAASFTAPETLAADGSYISAPISDGLGLVLAQNVSNILQDLNAAVQAL EAKGTSIPSNLVATAINAALLPVKGTVNVAVSGALPLLAVGGSGVNELVDASLLGATTVT LPTTVSTPQNLSNNLDARFVGTVVQTDLLDVNLLATADGVSNIYFAAGTTSEVTAPTITG VTGNSTAGYEVKGTADANATVEIRNAGGTVIGTGTADGTGAFTVTIPAGEAGANETLTAV AKNASGTESTPTTFQTPADPNTPVATPIVETVTGSTTKGYEVKGTAEVGTTIEVRDAAGT VLGTATTGTDGKYTVTLDPGTATANQTLSVVAKNASGTESQPATATTPADVTAPTVDNIT GNSGSGYEITGTADPNTTIEVRDPAGAVIGTGTSDANGEFTVTLPTGTTNPGDTLTVIGK DNAGNESQPTEVLVPADATVTAPTVTGVIGNSVAGYQVTGTADPNATIEIRDADGNVIAT GTADGTGSFAVNLPAGTANANETLTALAKDPAGNTSTPTTFQTPADEVVAPPSVDKVTGN TTQGYQVTGTAELGTTIEVRATDGTVLGTATTGPTGQYTVTLASGKATAKQTVNVVAKND TGLESQPTTAMTPADVTTPTIGDITGDSTTGYEITGTADPNTTIEVRNPDGTIIGTTTTD DQGNFTVDLPVGAANPGDILTVVGKDGDGNESQPTEVTVPEDATVAAPTVTTVTGTTATG YQVTGTAEPNVTIEIHNEAGLVIATGTTDGAGAFTITLPTGTATANEALTAIAKDAAGKE SNPTAFKTPADPDAPVATPTVDKITGSTTKGYQVVGTAEVGTTVEVRDADGTVLGMATTG TDGKYTVTLEPGKASANETITVVAKNATGKESQPATATTPADLATPTIDSITGNSGKGYE ITGTAEPKTTIDVRDADGTIIAATTANETGQYTVTLSAGVVTPGETITIISKDGAGNESQ PATAVIPADVVLAAPTITKVEGNKANGYTVTGTADPNVTVQFYNSSEKLLASGNTTTGGT FSIHIAAGLATEKETLTALTTDTQGNVSPKTTFMTPADITGEPEIKIAAPTVSSVLGTSK AGYLIKGTAEPNRIIQISNRLLRSVIAVGATDAEGNFAIQLTAGQATAQQSLLATATDGA GHYSTATTFMTPADPTNPGGGNGNTGGNNGNTGGNTGNNGATGGNNGNGSNTGSNPNGGS GLGTTGSGLGSLGNGLGTNGSGYHPKLSTISYGTGNHGKTGYLPSTGEKESSAVTTSLFG AFVALLASMGIIKRKRKN >gi|284795451|gb|ADDQ01000098.1| GENE 18 18827 - 20224 1841 465 aa, chain + ## HITS:1 COG:lin2943 KEGG:ns NR:ns ## COG: lin2943 COG0486 # Protein_GI_number: 16802002 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Listeria innocua # 6 465 1 457 457 606 71.0 1e-173 MQSATMEFDTIAAISTPPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKVPTHTIHYGH IVDPQNDQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLREGARMAEPGE FTKRAFLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILNTLAQV EVNIDYPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGRPNVGK SSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERS RKALADSDLILLVLNQSEELTEEDRQLLEATKGLKRVILLNKMDLPTKLDPNELQELVPA EEILSVSVLSNTGLDQLEAKIADLFFGGQTGEKDATYISNTRHIALLDQAALSLQEVING IEAGMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK >gi|284795451|gb|ADDQ01000098.1| GENE 19 20244 - 22142 2297 632 aa, chain + ## HITS:1 COG:lin2942 KEGG:ns NR:ns ## COG: lin2942 COG0445 # Protein_GI_number: 16802001 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: NAD/FAD-utilizing enzyme apparently involved in cell division # Organism: Listeria innocua # 1 630 1 627 629 910 74.0 0 MNQYQAESYDVIVVGAGHAGSEAALAAARMGVKTLLLTINLDMVAFMPCNPSVGGPAKGV VVREIDALGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYATEMKHTIEKEENL TLRQGIVEELIVEDGVCRGVVTSTGAAYRSQAVVITAGTALRGEIIIGELKYSSGPNNSQ PSVGLANHLKELGLEIDRFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSYSTPDSAYNQ NQEPCWLTYTNETTHEIIQKNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFL EPEGLNTEEVYVQGLSTSLPEDVQTEMLHSIEGLEKVEMMRTGYAIEYDVVVPHQLRPTL ETKVIENLYTAGQTNGTSGYEEAAGQGLMAGINAALKIQGKEPLVLKRSDGYIGVMIDDL VTKGTNEPYRLLTSRAEYRLILRHDNADLRLTEMGHEIGLVKEEQYAAYLVKKAAVEAEI ARLGKHRIKPTKEVQAFLETKGAAGLKDGILARDFLKRPEISYQEVAQFIPAPEEALDPK VIEQVEIQIKYEGYIKKAMEKVEKLKRMEAKRIPENIDYQAINGLATEAKQKLQKIQPET IAQASRISGVNPADISILMVYIEQGKIAKVQG >gi|284795451|gb|ADDQ01000098.1| GENE 20 22428 - 22541 124 37 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLSKKWYMGISLLLLISLTACASNSESTGSKKVQKNR >gi|284795451|gb|ADDQ01000098.1| GENE 21 22544 - 23188 556 214 aa, chain + ## HITS:1 COG:no KEGG:L80315 NR:ns ## KEGG: L80315 # Name: ywjE # Def: hypothetical protein # Organism: L.lactis # Pathway: not_defined # 6 214 106 316 317 252 60.0 6e-66 MTNSSSDSQKTEDSLPKIMNKLAANGQSVDEIYVTGDITVGNDATVKPGIYDLEVTGGRG NFTGTRKDINGLFFNWVLGTPDSSADYASKVRLILFDGDVLSFRNISKIKLNAVPEKVTE ATELGIGEYIVGRDVPAGKYKLSTNMEMDPQFANLGWDLDIYNDNEGNSRSQNFNPGNQD VAIELKEGEIISTSFYNSKHDVPTDTAKLILTAV >gi|284795451|gb|ADDQ01000098.1| GENE 22 23442 - 24242 1016 266 aa, chain + ## HITS:1 COG:Z5618 KEGG:ns NR:ns ## COG: Z5618 COG1028 # Protein_GI_number: 15804613 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Escherichia coli O157:H7 EDL933 # 1 266 1 268 268 323 61.0 3e-88 MTDWLGIKGKVVIVTGGSSGIGRSIVESLLAQEVYVANFDISASETQHEHLLFVKVDVTS RAEVEAGVAQVVEKFGTVDGLVNNAGINIPRLLVDKNHPHGPYELSDEVFDKIVAINQKG LYLMSQAVGRILVQKQAGVIINMSSEAGLEGSEGQSAYAATKAAVSSYTRSWAKELGKSN VRVVGIAPGIMEETGLRTLAYEEALAYTRNISVEQLRAGYSKTSTIPLGRSGKLHEVADL VCYYLSDRSSYITGITTNVAGGKTRG >gi|284795451|gb|ADDQ01000098.1| GENE 23 24258 - 26120 1778 620 aa, chain + ## HITS:1 COG:BS_licR_1 KEGG:ns NR:ns ## COG: BS_licR_1 COG3711 # Protein_GI_number: 16080911 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus subtilis # 28 456 28 481 499 95 20.0 3e-19 MTLVNRWYQVIKLLVDHKGMSLQELQEKLAASPQTVRKNIDTLNDELIGIAQIIQKENLF QLEINNFEGFEEVLSGRLKRESDFNSSSKRVSYIIKRLIEEDQFISTYDLSEELAVSRGT VNKDIKRMKELIAPWQVAVVGTPNRGIHLEGKEFDLRLLHVNYVQEYFEEQFLHETTKQM IQKIIKETRLAKQDSFLLRRVVSIVLQRVLAGKLITELPPEYVDYVRHNEQIEELMYHLE ITYNVTLSQWERSFISFPFNINTNHIRNSLLADEGLLADYFQKMMKKIHHSVVVEFDEDF LFSEMKDHLRNVMNRLVFHVECHDLFYGEIERQYPLAYELAKIGLQELGRLLNRCVPTVE FGYLALYFELALRGNYEAGAKKEIAVICSTGHGTALIIQRQLEKVLGPDVQIAHFSEEEA ERRELNQYFAIFTTIPLKNIRPQTPMIHLTNLFNDTWLRNEWQRAKEIRSVESQNIHMTY QLLENTQGYRANIQKMIADLEAEKLVDPQFIERIFTREDQQTTIFESGIAFPHTINQALP TIILSIGVFEESLVTPEGKVDVILLLGIPEELTATVEAELLQLYDRLFTIAGDERLRNEL RKQRDVLAVKEWMQRKGIII >gi|284795451|gb|ADDQ01000098.1| GENE 24 26117 - 26602 506 161 aa, chain + ## HITS:1 COG:no KEGG:EF3308 NR:ns ## KEGG: EF3308 # Name: srlR # Def: transcriptional regulator SrlR # Organism: E.faecalis # Pathway: not_defined # 1 161 1 161 161 299 99.0 3e-80 MSFIYVFGALFLTAYFVQIAMGMKQIKHFNQNYQELRQLGKVAIGRRAGKLKAGTIILFA VDSQGKILAARKMQGVTVLAKFHSLPQYVNEDIHYMDHYHPLVQKENKLTQQAMENAREI YLRVELGNYQETQPLTPLNGAKIQWQLWKNKVQTKLKGSVE >gi|284795451|gb|ADDQ01000098.1| GENE 25 26602 - 27061 512 153 aa, chain + ## HITS:1 COG:PM1971 KEGG:ns NR:ns ## COG: PM1971 COG3730 # Protein_GI_number: 15603836 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIC # Organism: Pasteurella multocida # 1 153 2 154 184 173 54.0 1e-43 MSYITKFAEGFMHLFQTGAETFISWMTGIVPVVLMLMVAMNTLIAFLGEERVTKVAKLSA KNPVTRYLVLPFLSAFMLGNPMSFTMARFLPEYYKPSYYAAQAQFCHTSNGVFPHINPGE LFVWLGIAQGIDTLGLNSMDLAIRYMFVGILMN Prediction of potential genes in microbial genomes Time: Sun May 15 13:17:06 2011 Seq name: gi|284795450|gb|ADDQ01000099.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont209.2, whole genome shotgun sequence Length of sequence - 4647 bp Number of predicted genes - 6, with homology - 4 Number of transcription units - 3, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 3 - 89 58 ## 2 1 Op 2 6/0.000 + CDS 106 - 1101 1178 ## COG3732 Phosphotransferase system sorbitol-specific component IIBC 3 1 Op 3 . + CDS 1125 - 1481 439 ## COG3731 Phosphotransferase system sorbitol-specific component IIA 4 1 Op 4 . + CDS 1509 - 2186 808 ## COG0176 Transaldolase + Term 2190 - 2239 12.1 + Prom 2286 - 2345 6.1 5 2 Tu 1 . + CDS 2387 - 4159 1765 ## COG4716 Myosin-crossreactive antigen + Term 4161 - 4206 9.4 6 3 Tu 1 . + CDS 4570 - 4645 114 ## Predicted protein(s) >gi|284795450|gb|ADDQ01000099.1| GENE 1 3 - 89 58 28 aa, chain + ## HITS:0 COG:no KEGG:no NR:no GWVTDFTTAYVCKQQGITLSKTVEIAVD >gi|284795450|gb|ADDQ01000099.1| GENE 2 106 - 1101 1178 331 aa, chain + ## HITS:1 COG:PM1970 KEGG:ns NR:ns ## COG: PM1970 COG3732 # Protein_GI_number: 15603835 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIBC # Organism: Pasteurella multocida # 5 330 4 328 329 344 57.0 2e-94 MTYNSIKVVKGNGGYGGPLVITPTEEKHKFIYITGGGEKPAIVDKIVELTGMEAVNGFKT SIPDDEIALAIIDCGGTLRCGIYPKKGIPTINVVPTGKSGPLAQYINETIYVSAVGPKQI TLTSEEAAADTEKPTSKKTEFKYDTSKKITEQKAEQQSFVAKIGMGAGKVVATFNQSARE GVQTMINTVIPFMAFVSLLIGVIQGSGIGEFFANIMAPLAGNIVGLTIIGFICSLPFLSP LLGPGAVISQVIGTLIGVEIGKGNIPPQLALPALFAINTQNACDFIPVGLGLEEAEAETV EVGVPSVLYSRFLNGAPRVLVAWLASFGLYS >gi|284795450|gb|ADDQ01000099.1| GENE 3 1125 - 1481 439 118 aa, chain + ## HITS:1 COG:PM1969 KEGG:ns NR:ns ## COG: PM1969 COG3731 # Protein_GI_number: 15603834 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIA # Organism: Pasteurella multocida # 2 117 3 118 123 66 29.0 9e-12 MSVFTTKVQSIGPEAELFKEEKMVILFGKDAPDALADYCYNIEVQPVTEAITDKQTLVID EQTYQITAVGEVVLTNLDTLGHITIKFDGATTPELPGTLYVEEKAIPEITVGTTITIL >gi|284795450|gb|ADDQ01000099.1| GENE 4 1509 - 2186 808 225 aa, chain + ## HITS:1 COG:SPy2048 KEGG:ns NR:ns ## COG: SPy2048 COG0176 # Protein_GI_number: 15675818 # Func_class: G Carbohydrate transport and metabolism # Function: Transaldolase # Organism: Streptococcus pyogenes M1 GAS # 1 215 1 216 222 256 62.0 2e-68 MEFMLDTINLEAIRKYQKILPLAGVTSNPSIVKQAGKIDFFAQMKEIKKTIGQASLHVQV VGQTTEEMLEDAQTIVQQLGQETFIKIPVNEAGLAAIKQLKQANYRITATAIYTEFQGYL AIAAGADYLAPYYNRMENLTIDSQKVIEHLAAEIKRTNAKSKILAASFKNVAQINQACQM GAQAVTIAPELVTQGLAMPAIQKAVTDFQEDWVAVFGVETVNELE >gi|284795450|gb|ADDQ01000099.1| GENE 5 2387 - 4159 1765 590 aa, chain + ## HITS:1 COG:L180241 KEGG:ns NR:ns ## COG: L180241 COG4716 # Protein_GI_number: 15672937 # Func_class: S Function unknown # Function: Myosin-crossreactive antigen # Organism: Lactococcus lactis # 1 590 1 587 587 935 73.0 0 MRYTNGNYEAFARPRKPKGVDDKSAYIVGGGLAGLATAVFLIRDGQMKGENIHIFEELTL SGGSLDGKFIPHDGFVTRGGREMENHFECLWDLFRSVPSLEVEDASVLDEFYRLDLDDPN SSNCRIIHNRGERVPDDGQFTLSKKAQKEIVDLFMTSEDQLIGKKIEDVFGEEFFESNFW IYWCSMFAFEKWHSAIEMRRYIMRFIHHIKGLPDFTALKFTKYNQYESLVKPLLSFLTNQ GVDFQYETTINDIQVDIKGATKVARRLLLTQAGKTKEIPLTENDLVFVTNGSITESSTQG DHHTPAPITHELGGSWNLWKNLAKQSPEFGHPEVFCENLPDESWFVSATITWENFDIEPY LSRLTHRKLRTGKIVTGGIITIKDSNWMMSFAMHRQPHFKEQNDQQSITWVYGLLSNKPG NYIKKPIEQCTGQEITQELLYHLGVPEGEIERISEESATTIPVYMPFITSYFMLREPGDR PLVVPNGSKNLAFIGNFADTERDTVFTTEYSVRTAMEAVYQLLEVERGVPEVFASAYDLR VLANSVYYLSDKKKLTEMDMPFVERKMVEHFVKKFEDTYIGDILRENHLI >gi|284795450|gb|ADDQ01000099.1| GENE 6 4570 - 4645 114 25 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGRWQELQQAMSAGVEAAIDAGWGR Prediction of potential genes in microbial genomes Time: Sun May 15 13:17:17 2011 Seq name: gi|284795449|gb|ADDQ01000100.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont209.3, whole genome shotgun sequence Length of sequence - 13192 bp Number of predicted genes - 12, with homology - 12 Number of transcription units - 7, operones - 2 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 916 695 ## EF3301 hypothetical protein + Term 919 - 963 12.1 + Prom 1002 - 1061 4.7 2 2 Op 1 15/0.000 + CDS 1164 - 1880 852 ## COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division 3 2 Op 2 25/0.000 + CDS 1896 - 2657 930 ## COG1192 ATPases involved in chromosome partitioning 4 2 Op 3 1/0.000 + CDS 2650 - 3540 1051 ## COG1475 Predicted transcriptional regulators + Prom 3558 - 3617 6.0 5 2 Op 4 4/0.000 + CDS 3658 - 3843 226 ## COG4481 Uncharacterized protein conserved in bacteria 6 2 Op 5 . + CDS 3900 - 5015 1505 ## COG0012 Predicted GTPase, probable translation factor 7 3 Tu 1 . + CDS 5124 - 5813 852 ## COG4858 Uncharacterized membrane-bound protein conserved in bacteria + Term 5873 - 5902 -0.3 8 4 Tu 1 . + CDS 5980 - 7662 1065 ## EF3294 hypothetical protein + Term 7692 - 7738 3.4 + Prom 7732 - 7791 8.6 9 5 Tu 1 . + CDS 7820 - 9301 2111 ## COG0516 IMP dehydrogenase/GMP reductase + Term 9332 - 9372 10.5 - Term 9457 - 9504 10.2 10 6 Tu 1 . - CDS 9513 - 10784 1658 ## COG0172 Seryl-tRNA synthetase - Prom 10810 - 10869 5.4 - Term 10835 - 10887 12.1 11 7 Op 1 40/0.000 - CDS 11119 - 12300 1190 ## COG0642 Signal transduction histidine kinase 12 7 Op 2 . - CDS 12290 - 12979 825 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 13013 - 13072 11.2 Predicted protein(s) >gi|284795449|gb|ADDQ01000100.1| GENE 1 2 - 916 695 304 aa, chain + ## HITS:1 COG:no KEGG:EF3301 NR:ns ## KEGG: EF3301 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 304 25 328 328 591 99.0 1e-168 RQAVYGLVESAIKDTRFLPLEQAKTAVAELFSEVEEVGSSAYERLFRFSAYRPQEKLSLL LWQLGAVLDQHGMLQLVGPYRFSKTIAPHATFWDLLAKTVQKAYPLGLLGSFNQEKAKKI HQLRMYIDRQNIMYIRDFFKQEGDTDEQALKRYVFAAKPQGMGGRKLKKSSARLHNKYPE GASYSLINKKRLTPNFHSEFILNEEGTFVTQWDVLVEDWRGRLISNPAYYQAAKNNEYQE KVLNGESFNYANRNNRTHELLDSSPPGRFDHELRKTAKKGWLSPRIQEYDYRRERQIKCD DYSK >gi|284795449|gb|ADDQ01000100.1| GENE 2 1164 - 1880 852 238 aa, chain + ## HITS:1 COG:lin2934 KEGG:ns NR:ns ## COG: lin2934 COG0357 # Protein_GI_number: 16801993 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division # Organism: Listeria innocua # 1 238 1 238 238 306 63.0 3e-83 MLPEEFRQLLAAKGIELTDQQMTQFDQYFHLLVEWNEKMNLTAITEEKEVYLKHFYDSVS LAFFEDFASDKAICDVGAGAGFPSIPLKIVFPSLNVTIVDSLNKRITFLTELVNQLGLAN VSLYHDRAETFGQKAEFRGAFDYVTARAVARLNVLSELCLPLVKKEGYFLALKASKSEEE INEAKPAIATLGGQFQKEVGFTLPITADERHIVVIQKKKETPKKYPRKPGLPNKQPIK >gi|284795449|gb|ADDQ01000100.1| GENE 3 1896 - 2657 930 253 aa, chain + ## HITS:1 COG:BH4058 KEGG:ns NR:ns ## COG: BH4058 COG1192 # Protein_GI_number: 15616620 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Bacillus halodurans # 1 252 1 252 253 356 70.0 2e-98 MTRIISVANQKGGVGKTTTTVNLGACLANLGKKVLLIDIDAQGNATSGMGVPKPDVAHDV YDVLVNEEPITSVVQHTSRENLDIVPATIQLAGAEIELTSMMARESRLKLAIDEVRDMYD FVLIDCPPSLGHLTINAFTASDSILIPVQCEYYALEGLSQLLNTIRLVQKHFNPELKIEG VLLTMYDARTNLGAEVVEEVRKYFREKVYDTIIPRNVRLSEAPSHGLPIIDYDIRSKGAE VYQALAKEVLENE >gi|284795449|gb|ADDQ01000100.1| GENE 4 2650 - 3540 1051 296 aa, chain + ## HITS:1 COG:lin2922 KEGG:ns NR:ns ## COG: lin2922 COG1475 # Protein_GI_number: 16801981 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 4 296 2 283 283 281 55.0 7e-76 MNKGKGLGRGIDALFQDIAKLEDVDVKNEQVTEILLNELRPNPYQPRKTFDETSLQELAN SILHSGVFQPIIVRKSAVKGYEIIAGERRFRASKLAGKEKIPAIIREFDEESMMQVAVLE NLQREDLNPLEEAEAYEMLMKNLKLTQAEVAERLGKSRPYIANYLRLLTLPDAVKAMVQK QSMSMGQARTLLGLKNKEQLLPLANRCIKDNLTVRQLEQLVAELNETQGKKGKKAKKAIK EKPIYIRESEDRLMDKFGTTVAIQEKEGKGKIEIEYLSSSDLARILDILDIHFDEE >gi|284795449|gb|ADDQ01000100.1| GENE 5 3658 - 3843 226 61 aa, chain + ## HITS:1 COG:BH4052 KEGG:ns NR:ns ## COG: BH4052 COG4481 # Protein_GI_number: 15616614 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 2 61 5 64 65 82 61.0 1e-16 MYDLGDIVEMKKPHACQANRWQIIRMGADIKIKCTNCGHIVMMPRRDFTKKLKKVIEKKA D >gi|284795449|gb|ADDQ01000100.1| GENE 6 3900 - 5015 1505 371 aa, chain + ## HITS:1 COG:SPy0006 KEGG:ns NR:ns ## COG: SPy0006 COG0012 # Protein_GI_number: 15674254 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted GTPase, probable translation factor # Organism: Streptococcus pyogenes M1 GAS # 1 371 1 371 371 552 78.0 1e-157 MALTAGIVGLPNVGKSTLFNAITKAGAEAANYPFATIDPNVGMVEVPDARLQRLTELVKP KKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDENIMREQNRDA DFVDPLADIDTINLELILADLDSINKRYTRVAKMAKAKDKEAVEELAVLDKIKPVLEEGL SARTIEFTPEEEKIVKSLFLLTTKPVLYVANVSEDEVADPDNNEYVQQVRNFATSENAEV IVVSARAEEEIAELDSEEDKAEFLEAMGIEQSGLDQLIRAAYDLLGLATYFTAGEQEVRA WTFRKGIKAPQAAGIIHSDFERGFIRAETVSYEDLDKYGNMQAAKEAGRVRLEGKDYVVQ DGDVMLFRFNV >gi|284795449|gb|ADDQ01000100.1| GENE 7 5124 - 5813 852 229 aa, chain + ## HITS:1 COG:SPy1828 KEGG:ns NR:ns ## COG: SPy1828 COG4858 # Protein_GI_number: 15675655 # Func_class: S Function unknown # Function: Uncharacterized membrane-bound protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 18 224 4 212 218 129 33.0 4e-30 MEAEALRAIVAENRQLEQNLTKRNEQYIFDLKKSLKAANLSEEELALALHGILPELVAGQ KTGKTARQLFGTVSERTEAILNKPAEVKEPAGWMIWLDNTLLLLGLLTIMLAAMSLFSKG TAQPLGLTTYILGAMAGGYVFYLMHKYVYRFDRQGGDKSKRPGWLKTTAILFGGMFLWIA VFAGSAMLPPVINPILDPMIALVIGALAFVARYFFKKKYNIQGSFMTRQ >gi|284795449|gb|ADDQ01000100.1| GENE 8 5980 - 7662 1065 560 aa, chain + ## HITS:1 COG:no KEGG:EF3294 NR:ns ## KEGG: EF3294 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 560 1 560 560 936 98.0 0 MGQQVKSWCRQHERLLIFISFLLLSGLSLYFVYFQENFLRASDFRFHQNRVEGLALAIKN NDWFPKINYFFLGGYGYASSLFYPDAYLYLPALLRVLGLSFVASMAVFVFAVNLATFSLT YYAGRLMALSKKRSYLFAILYGLSIYRMQDLFNRQALGEFLALSFFPLVLASLFLLRKGT TKCWPLLTLAMTGIGLAHFISIEMVSIWIGLYILFYWQQFFKKEVLWALTKAAGLTLLWL AFYLLPVAEQMKNQVFKVTSNPLTYISERSYPIDSLFINSLKSSVFHAKTANLGTLLFVG LVVAVVSLASKKIQNKRFIGLTLVLLLMVTTLFPWHWLNHTPLNTIQFPWRFLGILSVML AFFIAQDEWGVFRKSWTVALLVFLAISNLGIYQYQSIQSQQGRLLTKAEYEQPTPFYIGA GHEYLPDEINYQELLKQKKRQLDYSAEQVTITNVRMPYGKISFDYQVVKQSAKVTVPFIY YLGYQATIQMKNQTGAKKMNLTNQGGLAALSLSGTGHVDIRYQRTKVQKIGTMITLLSVG GFGFSRFLQQKKKHKIKEQR >gi|284795449|gb|ADDQ01000100.1| GENE 9 7820 - 9301 2111 493 aa, chain + ## HITS:1 COG:L21264_3 KEGG:ns NR:ns ## COG: L21264_3 COG0516 # Protein_GI_number: 15672202 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Lactococcus lactis # 209 493 1 285 285 464 84.0 1e-130 MSNWETKFAKKGLTFDDVLLIPAESHVLPNDVDMSVQLAKNIKLNIPLMSASMDTVTDSN MAIAMARQGGLGVVHKNMTVAQQADEVRKVKRSESGVIIDPFFLTPTNLVADAEELMSRY RISGVPIVETMENRKLVGIITNRDMRFVTDYQIKIEEVMTKDHLVTAPVGTSLKDAEKIL QKHKIEKLPIVDEAGRLSGLITIKDIEKVIEFPNAAKDEHGRLLVAAAVGVTSDTFERAE ALLEAGADAIVIDTAHGHSAGVIRKIKEIRETFPEATLIAGNVATAEATKALYDVGVDVV KVGIGPGSICTTRVVAGVGVPQLTAIYDAASVAREYGKAIIADGGIKYSGDIVKALAAGG HAVMLGSMLAGTDESPGEFEIYQGRRFKTYRGMGSLGAMEKGSSDRYFQGSVNEANKLVP EGIEGRVAYKGSVSDIVFQLIGGLKSGMGYVGAADLKALREEAQFVQMSGNGLKESHPHD VQITKEAPNYSVQ >gi|284795449|gb|ADDQ01000100.1| GENE 10 9513 - 10784 1658 423 aa, chain - ## HITS:1 COG:SP0411 KEGG:ns NR:ns ## COG: SP0411 COG0172 # Protein_GI_number: 15900330 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 423 1 423 424 612 73.0 1e-175 MLDVKMMRQNFDEVKAKLQTRGVKEEILVEFLRLDESRRDLLVKVEEMKKYRNDVSAEIA QLKRNKEDATAKIAEMKEVGGNIKALDAEINAIDEELRGITTTLPNLPDDSVPVGAGEEE NVEVRRWSEPRTFAFEPKPHWEVAENLGILDFERGAKVAGSRFVYYKGLGARLERALYNF MLDLHVYEHGYTEMITPYIVNDTAMFGTGQFPKFKEDVFQLQDTDLTLIPTAEVPLTNYY NNEILDGKDLPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFNKVEMVKFSDAEHSYEELE KMTNNAEEILQKLGLPYRVMALSTGDMGFSAAKTYDLEVWIPAQETYREISSCSNCEDFQ ARRAMIRYRDENDKVQYAHTLNGSGLAVGRTVAAILENYQNEDGSVTVPEVLVPYMGNLT VIK >gi|284795449|gb|ADDQ01000100.1| GENE 11 11119 - 12300 1190 393 aa, chain - ## HITS:1 COG:lin2515 KEGG:ns NR:ns ## COG: lin2515 COG0642 # Protein_GI_number: 16801577 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 76 384 76 379 380 187 36.0 2e-47 MLVKPKKIEKQKRITLTSKEISELLAEAIVTIVLLLLLNVSIMFLLGQLLSENSPLAGVI WATKDAVAKELNTDLFWSWNKFVLPIFFLVDAAVLYWRLIRRYHQMQLRHIISELHYIAD GNYNHRIPFELSGDLAKVVTSINGLVDSTVAAIEDERRIEKSKDELITNVSHDIRTPLTS IIGYLGLIEDRQFHSQEDLLKYTHTAYVKAKQMKLLVDDLFEYTKVRQPSVPIHTTTFDM AQLIEQLAADFELEAKKINMQIQVKANPASLMMEGDTEKLVRVFNNLLSNALKYGKGGHH IVMEVDKVGTEAIIAVRNDGPAIPKHSLDQLFDRFYRVEESRSQETGGTGLGLAIAQSIV ALHGGYIYAKSDQKWTSFIIHLPLQRTNKKSES >gi|284795449|gb|ADDQ01000100.1| GENE 12 12290 - 12979 825 229 aa, chain - ## HITS:1 COG:lin2516 KEGG:ns NR:ns ## COG: lin2516 COG0745 # Protein_GI_number: 16801578 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 3 227 5 230 231 229 53.0 4e-60 MKILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMDG MEVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRSQ MQLTKEEPDELEVGPLMINKDSHEVKTIEGKEIQLTALEFGILYLLASHPNRVFSADEIF ERVWQQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKIDAR Prediction of potential genes in microbial genomes Time: Sun May 15 13:17:34 2011 Seq name: gi|284795448|gb|ADDQ01000101.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont212.1, whole genome shotgun sequence Length of sequence - 17824 bp Number of predicted genes - 19, with homology - 17 Number of transcription units - 9, operones - 3 average op.length - 4.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 43 - 102 17.0 1 1 Op 1 8/0.000 + CDS 155 - 802 890 ## COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase 2 1 Op 2 . + CDS 807 - 1814 1047 ## COG0524 Sugar kinases, ribokinase family 3 1 Op 3 9/0.000 + CDS 1827 - 2666 998 ## COG3717 5-keto 4-deoxyuronate isomerase 4 1 Op 4 . + CDS 2688 - 3476 204 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 + Term 3484 - 3532 13.3 - Term 3469 - 3523 17.2 5 2 Tu 1 . - CDS 3538 - 3738 362 ## EF0439 immunity protein PlnM, putative - Prom 3777 - 3836 5.5 - Term 3793 - 3832 5.2 6 3 Op 1 . - CDS 3845 - 5326 1534 ## COG3104 Dipeptide/tripeptide permease 7 3 Op 2 . - CDS 5319 - 5393 69 ## - Prom 5438 - 5497 2.6 8 3 Op 3 . - CDS 5528 - 5638 64 ## - Prom 5692 - 5751 13.8 + Prom 5893 - 5952 7.0 9 4 Tu 1 . + CDS 6144 - 6743 879 ## EF0443 LysM domain-containing protein + Term 6789 - 6842 11.4 10 5 Tu 1 . - CDS 6814 - 7104 203 ## COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism - Prom 7227 - 7286 11.4 + Prom 7231 - 7290 7.0 11 6 Op 1 2/0.000 + CDS 7359 - 8174 1142 ## COG0447 Dihydroxynaphthoic acid synthase 12 6 Op 2 . + CDS 8179 - 9636 1219 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 13 6 Op 3 10/0.000 + CDS 9633 - 11000 1315 ## COG1169 Isochorismate synthase 14 6 Op 4 15/0.000 + CDS 11000 - 12733 1642 ## COG1165 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 15 6 Op 5 3/0.000 + CDS 12721 - 13545 784 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 16 6 Op 6 . + CDS 13546 - 14649 1023 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily + Term 14651 - 14722 9.4 - Term 14649 - 14701 13.1 17 7 Tu 1 . - CDS 14706 - 15404 712 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase - Prom 15431 - 15490 7.2 - Term 15494 - 15540 13.2 18 8 Tu 1 . - CDS 15656 - 17182 1559 ## COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases - Prom 17364 - 17423 6.7 + Prom 17289 - 17348 7.6 19 9 Tu 1 . + CDS 17403 - 17804 499 ## COG1764 Predicted redox protein, regulator of disulfide bond formation Predicted protein(s) >gi|284795448|gb|ADDQ01000101.1| GENE 1 155 - 802 890 215 aa, chain + ## HITS:1 COG:SP0317 KEGG:ns NR:ns ## COG: SP0317 COG0800 # Protein_GI_number: 15900249 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-6-phosphogluconate aldolase # Organism: Streptococcus pneumoniae TIGR4 # 1 206 1 206 209 224 54.0 1e-58 MKRVSILQKLENAGVIAVVRGKTKEEALKASQAIVAGGMRGIELTFTVPQATEVIQELVA LYQENPDVVIGAGTVLDATTARLAIVAGAEYIVSPSFDEETAKICNLYQVPYLPGCMTIT EMKEALKSGADIIKLFPGSVYGPSVISAFKAPLPQLNIMPTGGVSLENMAEWFAAGVTAV GVGGNLLAPAATGDFEKVREVAQAYMEKFQAIKGV >gi|284795448|gb|ADDQ01000101.1| GENE 2 807 - 1814 1047 335 aa, chain + ## HITS:1 COG:CAC2684 KEGG:ns NR:ns ## COG: CAC2684 COG0524 # Protein_GI_number: 15895942 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Clostridium acetobutylicum # 1 335 1 329 329 226 37.0 6e-59 MGKVVTLGEIMLRLSTPVGIRVAQTENFAVHYGGGEANVAISLANYGHQVTFASKVPDNS LGEAAKKHLSRYGVSTEFVRTGGTRLGTYYLETGTGERAASVVYDRAYSSFAQIEEMEWD LHELFSGVEIFHISGITAALSKTWQSITVALVKAAKQAGCQVSFDINYRGKLWSQKEASV ALKAILPFVDICSAGVLDARYLLEIPEPEEELEDALTWYYRKMQERYPNIQVFYSTKRQV HSATDNELIGTLWYKGAYYTSKCHRLQPIVDRVGAGDAFAGGVLHGILATYDPQTCIDFA TAASALKHTVHGDCNQFSQKEVLAFLATGSGKINR >gi|284795448|gb|ADDQ01000101.1| GENE 3 1827 - 2666 998 279 aa, chain + ## HITS:1 COG:BH2166 KEGG:ns NR:ns ## COG: BH2166 COG3717 # Protein_GI_number: 15614729 # Func_class: G Carbohydrate transport and metabolism # Function: 5-keto 4-deoxyuronate isomerase # Organism: Bacillus halodurans # 4 279 1 276 276 320 53.0 2e-87 MQNMETRYTHSPADIRHYSTEQLRDEFLVEKVFIPGAISLTYTHNDRMIFGGVTPTTEEL EIILDKELGVDYFLERRELGVINIGGPGFIEIDGAKETMKKQDGYYIGKETKHVRFSSEN PDNPAKFYISCVPAHHKYPNVKISIDEITPMETGDPLTLNQRKIYQYIHPNVCESCQLQM GYTILEPGSAWNTMPCHTHERRMEAYVYFDMEEDTRIFHMMGKPDETKHLVMSNEQAAIS PSWSIHSGVGTSNYSFIWAMCGENITYTDMDMVAMDQLK >gi|284795448|gb|ADDQ01000101.1| GENE 4 2688 - 3476 204 262 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 13 252 4 238 242 83 26 1e-15 MEFKMNDFQLDGKVALITGAVYGIGFEIAKSLAEAGATIVFNNLSPESVEQGLENYRAAG IEARGYVCDVTDEEQVQAMVAQIKEEVGSIDILVNNAGIIKRIPMVDMSAEEFRQVIDVD LNAPFIMAKAVIPDMIEKGHGKIINICSMMSELGRETVSAYAAAKGGLKMLTKNIASEYG QYNIQCNGIGPGYIETPQTAPLREPGHPFNEFILGRTPANRWGTPADLAGPAVFLASNAS DFVNGHILYVDGGILAYIGKQP >gi|284795448|gb|ADDQ01000101.1| GENE 5 3538 - 3738 362 66 aa, chain - ## HITS:1 COG:no KEGG:EF0439 NR:ns ## KEGG: EF0439 # Name: not_defined # Def: immunity protein PlnM, putative # Organism: E.faecalis # Pathway: not_defined # 1 66 1 66 66 90 100.0 1e-17 MRYLIGGIFLLISIWQFIVTGRTFSYLKKEGGKRTSPFILLGLWSSLVFAIISFAVAIAS FFYVSF >gi|284795448|gb|ADDQ01000101.1| GENE 6 3845 - 5326 1534 493 aa, chain - ## HITS:1 COG:L104437 KEGG:ns NR:ns ## COG: L104437 COG3104 # Protein_GI_number: 15672684 # Func_class: E Amino acid transport and metabolism # Function: Dipeptide/tripeptide permease # Organism: Lactococcus lactis # 5 493 2 497 497 511 55.0 1e-144 MSDKEQLEKLDKSFLGQPKGLATLFFTEMWERFSYYGMRAILMYYIYDTVANGGLGLPKA TALAIMSIYGSMVFMSSIIGGWVSDRVLGSRKTVFIGGLLIIAGHIVLATPFGVPALFVS IMLIVFGTGMLKPNVSGMVGHLYSKTDLRRDAGFSIFYMGINIGALIAPLVVGTLGQEYN YHLGFSVAAVGMFFGLLQYYFQGRKSLAGIGQAPTNPMSKEEQKKFAKAFMLAIVVALLI FGGAYVTGHLTIDFFINTISVLGILLPVYYFSKMLTSKDVTAEEKPKVLAYLPLFLAAIV FWSLEEQGSSILALFANERTQTSLFGFPIAASWFQSLNPVFVVILTPIFVTLWTKLGKRQ PSTVVKFSLGLVFAGLSFVLLMLPGLLYGTEGRVSPLWLFFSFFIMIVGEMCLSPVGLSI TTKLAPKAFEAQTVAIWLLADAASQAINAQIARFYTPGTESAYFGIVGLVAVVAGILLFI VKKPIQNLMGDVR >gi|284795448|gb|ADDQ01000101.1| GENE 7 5319 - 5393 69 24 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNLHLSHFIIKYSEYYKNWSFIYE >gi|284795448|gb|ADDQ01000101.1| GENE 8 5528 - 5638 64 36 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKQKELNKKILYFACYLFILILFKKGTAKATMKTKY >gi|284795448|gb|ADDQ01000101.1| GENE 9 6144 - 6743 879 199 aa, chain + ## HITS:1 COG:no KEGG:EF0443 NR:ns ## KEGG: EF0443 # Name: not_defined # Def: LysM domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 199 1 199 199 312 100.0 4e-84 MKSIKTILLGTTLAAGLGLFLGTDANAESLYTVKAGDTLSTISHQFAGDNSLIQKIASDN KLPNLDLIFEGEQLVIRSEKEVANTPAPAVEVAPVQQVVEQPVAQPVQQEVQQPVAQEVA QPAAPAASSDAKEWIAQRESSGSYDATNGQYIGRYQLSASYLNGDYSPANQERVADQYVA GRYGSWDAAKSFWLANGWY >gi|284795448|gb|ADDQ01000101.1| GENE 10 6814 - 7104 203 96 aa, chain - ## HITS:1 COG:lin2484 KEGG:ns NR:ns ## COG: lin2484 COG2050 # Protein_GI_number: 16801546 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein, possibly involved in aromatic compounds catabolism # Organism: Listeria innocua # 4 96 31 123 123 75 36.0 3e-14 MHKQPYGLVHGGLNGVLIETACSLGANENVPENTFAVGIDLQVNHLRSVHDGSLTVIATP DHSGKTLQVWEAKIYNADHQLTSVGRCTLTNRQKKQ >gi|284795448|gb|ADDQ01000101.1| GENE 11 7359 - 8174 1142 271 aa, chain + ## HITS:1 COG:lin1781 KEGG:ns NR:ns ## COG: lin1781 COG0447 # Protein_GI_number: 16800849 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroxynaphthoic acid synthase # Organism: Listeria innocua # 3 271 4 272 272 461 81.0 1e-130 MRNWTTIKEYDEILFEQAGKVAKITINRPHVHNAFTPKTVMEMIDAFNISRDKEDVGVII LTGAGDQAFCSGGDQKVRGNGGYVGEDNIPRLNVLDLQRLIRVIPKPVIAMVKGWSIGGG NVLQLVCDLTIAAENAKFGQTGPNVGSFDGGYGSGYLARVIGHKKAKEVWFMCKQYSAQE ALDMGWINTVVPLDQVEDVTMEWAEEMLTKSPIALRMIKASLNADTDGLAGVQQLAGDAT LLYYTMAEAQEGRDAFKEKRTPDFDQFPKFP >gi|284795448|gb|ADDQ01000101.1| GENE 12 8179 - 9636 1219 485 aa, chain + ## HITS:1 COG:lin1780 KEGG:ns NR:ns ## COG: lin1780 COG0318 # Protein_GI_number: 16800848 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Listeria innocua # 3 474 6 463 469 378 42.0 1e-104 MTWLNKQVQKRPDHPAFYFQDESWTFLEVQQEVSHWVTTYQQVLAPEEKRVALFSKNSKE LYFSILALWELGKELLFLNTHLTLAELTFQLKDAQVKTIIGAPETQALLEEISFVDVQPM VKKQHSLSHQEFQQPSDLESVASIMYTSGTTGQPKGVLQRFKNHLASARGTQENMGITAE DCWLCAVPLFHISGLSIVVRQLVLGCSIRLYDKFDEQQVTQDLQEGRGTVISVVATMLQQ LLSVYPEAGYSVSFKGMLLGGGPIAPDKLAQCEEKGIPVIQSYGMTETCSQVVALKFEDA ALKIGSAGQPLKDMQIKIVDELGQEQPEKQVGEILLKGPNVVSGYLNHRQPEKWTADGWF KTGDMGYLDAQGYLYLVSRLSELIISGGENIYPTEVEQVLQAITGIKAAAVVGEPDAQWG AVPVAYVISDQEITLAQIQDQCSRKLAKYKRPKRIYFCHSFPQTASGKIAKHRFMTEERE AFLIR >gi|284795448|gb|ADDQ01000101.1| GENE 13 9633 - 11000 1315 455 aa, chain + ## HITS:1 COG:lin1784 KEGG:ns NR:ns ## COG: lin1784 COG1169 # Protein_GI_number: 16800852 # Func_class: H Coenzyme transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Isochorismate synthase # Organism: Listeria innocua # 2 453 4 459 462 312 37.0 1e-84 MKLPDELRQAYQKNARQFSWVFPLETEQTALAIFAAGEKAYQGERFFWQTPKKDFALVGF GYETILKGAETETHQLNNFLKKEAATRFQNMSISGTGALLFGGLPFDTEQTPTEAWGELG EGWFYLPSILFTFSGSRIYGTLNFSGSSEQEVEERWSTLVAQFDRLLATCEELPAVAETK IDKEEVAVTEWLQAVNETVAVLREDGPLKKVVLARQLAVSSPEKIRSNQVLVNLMAQQQN TYLFALEANDTSFIGATPERLLLGTRETFATACIAGTIKTGQTSEETKALGAQLLQDRKN TGEHQIVVERLAKELAKMTTSENSIQAPIILENRDVQHLYVPISGQRKPGISFLESVMQL HPTPALGGEPKELAVEWIRQYEPRSRGLYGAPIGWISGNDDSGEFAVALRSGVFAGQQGV LYAGCGIVADSQAELEREETKIKFQPMLRGIGGKV >gi|284795448|gb|ADDQ01000101.1| GENE 14 11000 - 12733 1642 577 aa, chain + ## HITS:1 COG:lin1783 KEGG:ns NR:ns ## COG: lin1783 COG1165 # Protein_GI_number: 16800851 # Func_class: H Coenzyme transport and metabolism # Function: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase # Organism: Listeria innocua # 2 565 3 573 580 505 45.0 1e-143 MNHQETMTDYLMAFIEGLKNSGVEQAVISPGSRSTPLALLLHRETAIQTFVDVDERSAAF FALGLSKASQKPVVLLCTSGTAAANYYPAICEANISHVPLVVLTTDRPHELRQVGAPQAM DQLQMYQNHVKLFVEMALPEATEEMLNYAYWQGAKGAAFAQQTPAAPVHLNFPLREPLLP DLERKTKSSQQTALFAGQSILSTEQVQQLADQWYQKNGVLVVGGSHTEEEAALFIQLAEA LQWPLLADPLANIVTHGQNSEVVIAHSDLFLNVATLPQEPEVVVRFGSLPISKNIMLWLK RLATTETTFYFVDENGQWQEQLKKSQTVIQAKETTFVEQLLTVVKPTEATWLAQWLLLEK TVSEVLLETLNATELNETTASLAVHQTMKENGQLFVSNSMAIRYLDRFMDSRPYRMFGNR GINGIDGIVSTALGMSAVAPTQQNVLLIGDLALYHDMNGLFLAKRYQLPLTIVLLNNNGG GIFSFLSQRTLREDDFEPLFGTPLDLDFSLVAELYGASYQEVKTIVELKQILQAAAEEPQ FQVIEVKGNRQENVHLYESILAEIGRRVERQGISWNG >gi|284795448|gb|ADDQ01000101.1| GENE 15 12721 - 13545 784 274 aa, chain + ## HITS:1 COG:lin1782 KEGG:ns NR:ns ## COG: lin1782 COG0596 # Protein_GI_number: 16800850 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Listeria innocua # 11 272 7 268 275 192 40.0 6e-49 MERLIRGMQYHYQWLTPFDAKRTTLVCLHGFTGTLATFAAVFPSQTPYNVLGIDLPGHGA TASLVAPERYTMKQVCHDLAELTESLNLPCFCLLGYSMGARTALGFALHYPQKVQHLLLE SGSPGLATAAERQTRICQDHRLAERLLEEPLVDFIDFWQELPLFQTQKALPVAQQMAIRQ ERLSQSAFGLASSLWYMGTGAQESYWERLAELQPIPTDLLVGGEDQKFIGIAKKMQARQP LLRLTIFPEAGHCIHLEQPTIFYEKVTALLEGAV >gi|284795448|gb|ADDQ01000101.1| GENE 16 13546 - 14649 1023 367 aa, chain + ## HITS:1 COG:lin2664 KEGG:ns NR:ns ## COG: lin2664 COG4948 # Protein_GI_number: 16801725 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Listeria innocua # 1 362 1 362 374 372 50.0 1e-103 MNIQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGNQGFGELVAFEQPDYVQET LVTERFIIQQHLIPLLLTEAIEQPQEVSTIFEEVKGHWMGKAALETAIWDLYAKRQQKSL TEFFGPTRRKIPVGISLGIQKDLPQLLKQVQLAVEKGYQRVKLKIRPGYDVEPVALIRQH FPNLPLMVDANSAYTLADLPQLQRLDHYQLAMIEQPFAADDFLDHAQLQRELKTRICLDE NIRSLKDCQVALALGSCRSINLKIPRVGGIHEALKIATFCQENDLLVWLGGMFESGVGRA LNLQFASQPTFSFPGDISATERYFYEDIITEPFVLEKGTMPVPQRLGIGVTLSQTNLLKY SQYQKIM >gi|284795448|gb|ADDQ01000101.1| GENE 17 14706 - 15404 712 232 aa, chain - ## HITS:1 COG:yieK KEGG:ns NR:ns ## COG: yieK COG0363 # Protein_GI_number: 16131586 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Escherichia coli K12 # 24 225 1 209 213 209 49.0 3e-54 MKFLIKQDFDAMSEWAKMLLLSTMSQDKRVNLSITAGKTPTLVYQKLASIVKNSSDFYNV HYYNFDEIPVPHQKEGITLTDLRTLYLTPAEISDQNIHPLTVENFQQQEQRIADAGGLDL MLIGLGADGHFCGNMPTTTHFKNETYQVTVTGSEPWFVPEMMQPGMTFVTMGPASIMKVK HLVLIVNGEQKAQMVKQVLQGPVTETYPASILQLHPNLTVLLDEAAASQLEK >gi|284795448|gb|ADDQ01000101.1| GENE 18 15656 - 17182 1559 508 aa, chain - ## HITS:1 COG:lin0373 KEGG:ns NR:ns ## COG: lin0373 COG0365 # Protein_GI_number: 16799450 # Func_class: I Lipid transport and metabolism # Function: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases # Organism: Listeria innocua # 7 507 6 508 508 644 59.0 0 MTHLLDYQPLNLYTNYQEAAEKTPTVPIIFDESLPAFPALGLETTYGESHQEILKRAYQL AALGVKKGDKIIIYKSPKFDTYLLAVAASYLAAVPVMVSYHLPFETIEVFVDRLEDPYIL FDDVTAEKVQAVRNSSANKKLSVASLLEADATEVPQDELTKDEIAYMTHTSGTTGIPKLI CHSNHSMGWRTKWQKTIFTKIAEKKLVGFHISPVHSRFNIGVSSLMAMGFPMMPLANASS EKVAEMFSTYQPIAVETHPNNFVQWVRLAKEKPEAFASVHYYHSTFDAINNATMVAFLKA SAANEPIFLQVYGQSECGPMILRAHTLDSLKDSDARDMGVGLEDLTQARITDEKGQVLPA MTDGHIQFLSKGRALTYYKEDARFAENVYGEWWDSGDYGMLDERGHLFLKDRQVDLIENI DSNLAIEDHLLDALDFLEEVIIVRGKENEPQPILAVVPGEEMDWDAWWTQVADLPHLNEP IIMAFDEIPHTATMKVQRLQLEKWLKEQ >gi|284795448|gb|ADDQ01000101.1| GENE 19 17403 - 17804 499 133 aa, chain + ## HITS:1 COG:lin2302 KEGG:ns NR:ns ## COG: lin2302 COG1764 # Protein_GI_number: 16801366 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Listeria innocua # 1 132 1 137 138 152 59.0 1e-37 MKKIYETTIINTGGRAGEVHSPDKSFSYAVASPGVKKENTTNPEQLFAAAYSACFNGALE LVMDQEKVEGKSTVTARVSLFQGEDGFSVGAELEVHIDGVDQAKAEELVKKAHEICPYSK ATRNNIDVKLTVI Prediction of potential genes in microbial genomes Time: Sun May 15 13:17:55 2011 Seq name: gi|284795447|gb|ADDQ01000102.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont212.2, whole genome shotgun sequence Length of sequence - 24430 bp Number of predicted genes - 29, with homology - 26 Number of transcription units - 14, operones - 7 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 13 - 792 657 ## COG0730 Predicted permeases - Prom 898 - 957 9.1 + Prom 857 - 916 6.9 2 2 Op 1 13/0.000 + CDS 953 - 1756 1046 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 3 2 Op 2 1/0.000 + CDS 1749 - 2567 1009 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 4 2 Op 3 . + CDS 2598 - 3074 675 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 5 2 Op 4 2/0.000 + CDS 3091 - 3942 573 ## COG1737 Transcriptional regulators 6 2 Op 5 . + CDS 3957 - 4847 1001 ## COG2103 Predicted sugar phosphate isomerase 7 2 Op 6 . + CDS 4860 - 5849 930 ## COG1680 Beta-lactamase class C and other penicillin binding proteins 8 2 Op 7 . + CDS 5859 - 6278 580 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA + Term 6321 - 6374 7.5 - Term 6201 - 6239 5.1 9 3 Tu 1 . - CDS 6457 - 7266 806 ## EF0462 hypothetical protein - Prom 7418 - 7477 7.4 + Prom 7353 - 7412 5.8 10 4 Tu 1 . + CDS 7460 - 8068 761 ## PROTEIN SUPPORTED gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent + Term 8085 - 8134 16.5 + Prom 8115 - 8174 3.0 11 5 Tu 1 . + CDS 8216 - 9196 1053 ## COG0253 Diaminopimelate epimerase + Prom 9208 - 9267 5.6 12 6 Op 1 . + CDS 9346 - 10554 1386 ## COG1316 Transcriptional regulator + Term 10571 - 10618 10.6 + Prom 10594 - 10653 9.1 13 6 Op 2 . + CDS 10685 - 11386 1082 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase + Term 11395 - 11455 20.1 + Prom 11401 - 11460 7.0 14 7 Tu 1 . + CDS 11482 - 12183 1001 ## COG1285 Uncharacterized membrane protein + Term 12210 - 12249 5.1 + Prom 12254 - 12313 5.3 15 8 Op 1 8/0.000 + CDS 12342 - 12911 746 ## COG1704 Uncharacterized conserved protein 16 8 Op 2 . + CDS 12956 - 14242 1122 ## COG1512 Beta-propeller domains of methanol dehydrogenase type + Term 14245 - 14294 13.1 - Term 14238 - 14275 6.0 17 9 Op 1 24/0.000 - CDS 14282 - 15247 1059 ## COG0208 Ribonucleotide reductase, beta subunit - Prom 15355 - 15414 4.7 - Term 15397 - 15433 3.3 18 9 Op 2 18/0.000 - CDS 15449 - 17608 2196 ## COG0209 Ribonucleotide reductase, alpha subunit 19 9 Op 3 11/0.000 - CDS 17589 - 17966 215 ## COG1780 Protein involved in ribonucleotide reduction 20 9 Op 4 . - CDS 17968 - 18192 337 ## COG0695 Glutaredoxin and related proteins - Prom 18387 - 18446 7.1 + Prom 18454 - 18513 4.9 21 10 Op 1 22/0.000 + CDS 18717 - 19190 549 ## COG1918 Fe2+ transport system protein A 22 10 Op 2 . + CDS 19187 - 21337 2049 ## COG0370 Fe2+ transport system protein B 23 10 Op 3 . + CDS 21344 - 21481 245 ## EF0477 hypothetical protein + Term 21714 - 21773 6.1 - Term 21672 - 21701 -0.2 24 11 Op 1 . - CDS 21758 - 22927 903 ## COG0582 Integrase 25 11 Op 2 . - CDS 22971 - 23201 220 ## EF0480 excisionase, putative - Prom 23292 - 23351 76.5 + TRNA 23278 - 23350 81.5 # Lys CTT 0 0 + Prom 23277 - 23336 75.7 26 12 Op 1 . + CDS 23512 - 23622 155 ## 27 12 Op 2 . + CDS 23659 - 23739 65 ## 28 13 Tu 1 . - CDS 24119 - 24232 63 ## EF0481 hypothetical protein 29 14 Tu 1 . - CDS 24357 - 24428 79 ## Predicted protein(s) >gi|284795447|gb|ADDQ01000102.1| GENE 1 13 - 792 657 259 aa, chain - ## HITS:1 COG:lin0630 KEGG:ns NR:ns ## COG: lin0630 COG0730 # Protein_GI_number: 16799705 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Listeria innocua # 4 252 3 243 246 67 26.0 3e-11 MRVLLIYFITIFLSNTVGALSGMGGGVIIKPVLDFLGFHSLNSIAFYSSVAVFVMSISST YKQYQNGVQIEWKKAASISFGSLVGGMLGDLLLNQAIALAPNEEKVQLIQYIIMLLTLVL VLLYNQFSNWHLHLNGLSIFLIVGLGLGILSTFLGIGGGPINVACLILFFGMDIKSATVY SIITIFFSQLAKLGNIGLTTGFAVFDLTMLWAIIPAALFGGYVGGLFSKKLSQQRVAQIY SLVVFLVILLNMYNLWTVI >gi|284795447|gb|ADDQ01000102.1| GENE 2 953 - 1756 1046 267 aa, chain + ## HITS:1 COG:lin0022 KEGG:ns NR:ns ## COG: lin0022 COG3715 # Protein_GI_number: 16799101 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Listeria innocua # 1 267 1 267 267 216 47.0 3e-56 MTVSIGIILILCLYTVVGVLDQISIQIGPYTPLFAATFTGLVLGDVQTGLMIGATLQLMT LGVATYGGATVPDFLSGAIMGTAYAIISGKGAEYGIGVAVPIGLLLTQLDILGRMANTFF QHKADRYAEEGNYKGVERCNVLGIFPWTISRVIPVFIGLAFGEQVVNAINNWIPIWVMNG LKAAGAILPAMGIAILMRYLPIKTYWPYFIIGFVLLAYGAQFFSVLGVALVGLALAAIYV MNHNKGGAATTSGTVIYEDDEEVEIDD >gi|284795447|gb|ADDQ01000102.1| GENE 3 1749 - 2567 1009 272 aa, chain + ## HITS:1 COG:lin0023 KEGG:ns NR:ns ## COG: lin0023 COG3716 # Protein_GI_number: 16799102 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Listeria innocua # 5 262 16 272 275 207 45.0 1e-53 MTNKLTKKDINKVYVRNLFGYQWGWNYEKMQGLGYAWVMMPALKRLYSEDSVAMKKALKT HLGFMNTTPAMSHLIVGADMALEEEVGIEDETAITGLKTGLMGPFAGVGDTIFIAIYRAI VFSIAAYMAQGGQVVGLLIPLIAGAVVLWVRYKFTWIGYHQGKKIATEFADKMKLFTQGA AILGLTVVGGLIPSVITYKLDLTYKMGDVTLSVQEMLDKILPALIPLGIVLLSYWLLGKK KMNSTRLIFVLILIGMVLGNLQPMLAWVGGLF >gi|284795447|gb|ADDQ01000102.1| GENE 4 2598 - 3074 675 158 aa, chain + ## HITS:1 COG:lin0021 KEGG:ns NR:ns ## COG: lin0021 COG3444 # Protein_GI_number: 16799100 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Listeria innocua # 3 148 6 151 162 142 54.0 3e-34 MTIVHARVDERLIHGQVATVWTNTVGAQRIMVVNDAAVKDQLQIGALKMAKPAGVKLSIL SKRKAIEKILAGNYDEEKVFLITKDIADMAALIDGGVPLQSFNVGNISQKEGSRAIKKSV ALTDEDIQTVRRLTDNGVTITAQMIPSEPNEAILTFIK >gi|284795447|gb|ADDQ01000102.1| GENE 5 3091 - 3942 573 283 aa, chain + ## HITS:1 COG:L147291 KEGG:ns NR:ns ## COG: L147291 COG1737 # Protein_GI_number: 15673115 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 1 283 1 283 283 124 28.0 2e-28 MEPIRSIRQKYKDFSKVNKRIADYILKDPTRLLSLTANEIASNSETSPASVTRFSKQLGF DSWEELKLSIAAVQAASNGKKDIDPIVAADDSVDTICMKVESLLNATIEDLFYTVDKQAL ERAIAHVKKAEKIHLVGIGASSLTTYNLYHKFNRAGRQAIFNYDSHMMLEFLNYATAQDI LITVSYSGLTKEALIACEIAKNRGATVIFITSNDGENVRSLSDEVLLVPNNEHLIRVGAI SSIASSMAIGDVLYLGSIQDDLDTEIERNMIETSQLVSRLKEK >gi|284795447|gb|ADDQ01000102.1| GENE 6 3957 - 4847 1001 296 aa, chain + ## HITS:1 COG:YPO2925 KEGG:ns NR:ns ## COG: YPO2925 COG2103 # Protein_GI_number: 16123112 # Func_class: R General function prediction only # Function: Predicted sugar phosphate isomerase # Organism: Yersinia pestis # 1 295 1 295 295 279 50.0 5e-75 MNLEGLTTEARNEATKKIDQVSTLEMVTLINQEDQKVAQAIEKVLPQIAAAIDAAAERFK KGGRLIYCGAGTSGRLGALDAIELTPTYSVSPERAFGILAGGEKAMYQAIEGAEDSKELA IENLTQHQLTARDVVIAIAASGRTPYAVSAIEYGKKVGALTISVTCNNQSPMNQLAEIGI APIVGPEVITGSTRMKAGSAQKMVLNMFSTGIMVKVGNIYQNLMVNVQPTNEKLIQRATN IIKEAAEIEESQAKEYLEAAQLEVAPAIVMAKAHVDFQKAKQLLADHDGRISEVLA >gi|284795447|gb|ADDQ01000102.1| GENE 7 4860 - 5849 930 329 aa, chain + ## HITS:1 COG:lin2030 KEGG:ns NR:ns ## COG: lin2030 COG1680 # Protein_GI_number: 16801096 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Listeria innocua # 7 329 6 326 335 173 33.0 4e-43 MNQIAIQETIQRLINQQVVPGVAWGTITEGSLSEQYTGFLGNTGPFARQKVSSASLYDLA SLTKVIGTTSRMLQLIDTNQLAFSTTVGEILPAYQGLSCSIGELLLHQSGLPADVVDKKN VTKKSLQEIILTHSLSERGKTIYSDLGYYLLGEIIQVLDRCSLEESFQTYVFQPMNLQHT SFTVSDFAQAVPTEITKQRGVIQGVVHDSKAYQLKAPIGSAGLFTTLPDLLTFVQCFMNN RYPSGKPLFSEKMFTALWSMNQGGRTFGWELKKTQAGAGYLYHTGFTGTAIGMKKETKEA LILLTNRIHPTREERGFLKARTKIYQQYF >gi|284795447|gb|ADDQ01000102.1| GENE 8 5859 - 6278 580 139 aa, chain + ## HITS:1 COG:SP0064 KEGG:ns NR:ns ## COG: SP0064 COG2893 # Protein_GI_number: 15900009 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Streptococcus pneumoniae TIGR4 # 1 138 1 134 134 70 36.0 1e-12 MKPKLILMSHGRMAEETLASTQMIVGELADAAIVSMTAEDGLSGTQAKLAAILKEAGNVP TLVLADLKGGTPCNVAMMAMGTYPQLRVVAGLNLAMAIEAAVSPVENVDELAAYLTQIGQ SAVTTIDLPELTDEEEFEE >gi|284795447|gb|ADDQ01000102.1| GENE 9 6457 - 7266 806 269 aa, chain - ## HITS:1 COG:no KEGG:EF0462 NR:ns ## KEGG: EF0462 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 269 1 269 269 499 100.0 1e-140 MNTLQLFKQAFFSVSELRHAKKMAFWKVILYAVFLSAILALPITKQVFSVLQEVQQDGQK IAEKLPDFSIENGTLQTKAKESGFIYQTDSIIFTFDPDGKRTAADVQKDLIGNAFGLAFL QDEFVVALPNSGATESILGTDQFIFPYSKGTLDGVNAQSIKTALSEAAIPWWTKLIVFLV AIYPVLIGLVLDLLIAAIGASLYSKLRFYSLRLIDCLKIITYCATVPVILSAILNFVNPM FNDGILVILLSLFFFFVTTKNEPRNIPGS >gi|284795447|gb|ADDQ01000102.1| GENE 10 7460 - 8068 761 202 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent [Streptococcus pneumoniae TIGR4] # 1 202 1 201 201 297 67 4e-80 MTYTLPELPYAYDALEPYIDVETMHLHHDKHHNTYVTNLNAAIEKHPELGEKSVEDLISD MNAIPEDIRTAVRNNGGGHANHTFFWEIMAPNAGGQPTGAIKEAIDETFGSFDEMKAAFK TAATGRFGSGWAWLVVNNGKLEITSTPNQDSPLMDGQTPVLGLDVWEHAYYLKYKNVRPD YIEAFWNVVNWDKVNELFAAAK >gi|284795447|gb|ADDQ01000102.1| GENE 11 8216 - 9196 1053 326 aa, chain + ## HITS:1 COG:lin2126 KEGG:ns NR:ns ## COG: lin2126 COG0253 # Protein_GI_number: 16801192 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate epimerase # Organism: Listeria innocua # 3 325 4 323 329 279 46.0 4e-75 MNVMMQKVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVGEGT HGTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQAPNLAE EVATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSKTIRFTAVAVPNPHLVAFVDHET LNGPEFERIASYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGTAMCASS LLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHLIEGSLTDLLNG AFEKITITETNEQKHYQEFLQTLSQK >gi|284795447|gb|ADDQ01000102.1| GENE 12 9346 - 10554 1386 402 aa, chain + ## HITS:1 COG:BH3670 KEGG:ns NR:ns ## COG: BH3670 COG1316 # Protein_GI_number: 15616232 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 5 305 2 303 304 234 42.0 2e-61 MKLWKKVVLGFLSVLLVVVAGVCAYGIKMYSDANSTINGIYQSVNRKSNKGATANIDAQE PFSVLLMGIDTGDLGRTEQGRSDTTMVVTINPKENKSTMISLDRDILTDIVGNDTQDKLN HAYAFGGAEMAINTVQELLDIPIHHYVSINMKGLKDLIDAVGGIEVDNTIGEFTLDGITV PAGKIKLDGTTGLAYARMRHEDPEGDVGRQRRQREVVEKIVRKVMSFDGVSKYRKILDAV EANVKTDLTWDDMMDIQSKYLSAFKTIDSEQLQGYSATIDDIYYQVLDPNSLYKTQTTLR KQLGLKEHASEREKDLAFYNQFSYAVTDTALIGESGDSSANSSTSSSSTADTTAGQTEYN GNTQQAAEGAYDPNTYVDPNAYTDPNAYADPNTYVDPNAPQY >gi|284795447|gb|ADDQ01000102.1| GENE 13 10685 - 11386 1082 233 aa, chain + ## HITS:1 COG:L14408 KEGG:ns NR:ns ## COG: L14408 COG0363 # Protein_GI_number: 15673555 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Lactococcus lactis # 1 233 1 233 235 295 63.0 4e-80 MQIIRVANAEEGGKKAFELIKEGMNNGAKVLGLATGSTPETLYKEMTASDVDFTEMTSVN LDEYVGLGGEDEQSYRYFMNKHLFDKKPFKETFVPNGKAEDLDAASAEYEKIIDAHPVDI QILGIGQNGHIGFNEPGTPLDSLTHVVELTESTINANKRYFDKVEDVPTRAVSMGIGSIM KGKKMILMAYGEAKAEAIKGMIDGPVTTDMPASALQNHQDVVVIIDDAAASKL >gi|284795447|gb|ADDQ01000102.1| GENE 14 11482 - 12183 1001 233 aa, chain + ## HITS:1 COG:FN0215 KEGG:ns NR:ns ## COG: FN0215 COG1285 # Protein_GI_number: 19703560 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Fusobacterium nucleatum # 3 229 13 242 244 139 37.0 3e-33 MLQLTIPEIILRLVLAMVMGGAIGFERQYKNRPAGMRTHILVCMGAAIIALIQSQIAINA LKDALANPALTGVIRSDQARLIAQVVSGIGFLGAGTIIVTKQSVTGLTTAASLWTVAGLG IAVGMGYYTIALTSFIGVLFALTIVKRIIHVPTIKKLEIRYQHKQETKEFINQYFEEKHI EIYDVNFNVSWVDDTKIYTNIYTIDLPKGLTYADVIEDLSVSNNVTKLRLINV >gi|284795447|gb|ADDQ01000102.1| GENE 15 12342 - 12911 746 189 aa, chain + ## HITS:1 COG:TM0961 KEGG:ns NR:ns ## COG: TM0961 COG1704 # Protein_GI_number: 15643721 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Thermotoga maritima # 26 188 32 193 193 138 46.0 6e-33 MNKKNKFLSIIVVVIVIIGAFVMKAYNQLITLDNKVEAEWSQVENVMQRRADLIPNLVSS VQGSMTQEKEVLKEITEARKAYAGAKSSSEKGQANEQIEKGLGNFVTVLNEDYPKLASSE NVKTLMTQLEGSENRISVERRNYIQAVETYNQQISKFPDKIIAKLLGFEKKTNYVATEQG KEVPQVKFK >gi|284795447|gb|ADDQ01000102.1| GENE 16 12956 - 14242 1122 428 aa, chain + ## HITS:1 COG:BMEI0229 KEGG:ns NR:ns ## COG: BMEI0229 COG1512 # Protein_GI_number: 17986513 # Func_class: R General function prediction only # Function: Beta-propeller domains of methanol dehydrogenase type # Organism: Brucella melitensis # 118 262 28 170 253 91 34.0 3e-18 MDKKVEKIQEKVRLFYKKHQRNTTIVVVISLSMILILGMAAWYEGKGISYEAKQTALREK QHALQKKRDDILAGKMTEASTQTTINNFSKQEITGENELVTITGTNGQLNINDANIYVSD NAGIVSNQLKQKMFQLNQQLLENANGAQFMLITVPALPSGESVESYSNKIANQLGVGDRE KNNGVVFLMAIEDRESRLEVGYGLESILTDSYADDIINNEEVKEAFRDEDYNTGLNKIID QVSAAINSKTAQVDNELTNIQTELNTNTTKRNVLLMASIAGMLICAIYILQILRTRKLVK KMYQDYLNCLPTKAVLNNSEQTKKVLNKMKKTSFYCLYLNGATLFATKGKIRRATKRGSL LSIYPNAKKQSFGRLLVGDTLYSYDGSVLTYAYLNSQYNPSNHSSSGSGSGGSFGGGSFG GGGASGSW >gi|284795447|gb|ADDQ01000102.1| GENE 17 14282 - 15247 1059 321 aa, chain - ## HITS:1 COG:SP1180 KEGG:ns NR:ns ## COG: SP1180 COG0208 # Protein_GI_number: 15901045 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, beta subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 319 1 319 320 529 85.0 1e-150 MATYYEAINWNAIEDVIDKSTWEKLTEQFWLDTRIPLSNDLDDWRTLSDLEKTTVGYVFG GLTLLDTVQSESGMDQLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIDDI FEWTNTNKHLQYKAERINEIYKNGTPLEKKIASVFLETFLFYSGFYTPLYYLGNNKLANV AEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQDKLKDWMYNLLYELYENEERYTEELY DDLGWTEEVKTFLRYNANKALMNLGMDPLFADTANDVNPIVMNGISTGTSNHDFFSQVGN GYLLGTVEAMKDDDYLYGLDK >gi|284795447|gb|ADDQ01000102.1| GENE 18 15449 - 17608 2196 719 aa, chain - ## HITS:1 COG:SP1179 KEGG:ns NR:ns ## COG: SP1179 COG0209 # Protein_GI_number: 15901044 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 719 1 719 719 1144 77.0 0 MSLKEIKDVSYFKLNNEINRPVDGQIPLNKDKEALAAFFKENVEPNTRKFSSAEEKINFL MKEDFIETEFIEKYSMDFIEKLYAFLDEQHFQFKSFMAAYKFYSQYALKNNAGTEYLETY EDRVAFNALYFADGDEELALTLADEMIHQRYQPATPSFLNAGRKRRGELVSCFLVQVTDD MNSIGRSINSALQLSRIGGGVGITLSNLREAGAPIKGYDGAASGVVPVMKLFEDSFSYSN QLGQRQGAGVVYLNVFHPDIEMFLSAKKENADEKIRVKTLSLGVIVPDKFYELTRNNEDM YLFSPYSVEREYGVPYSYVDITKEYDNLVANPNIRKRKIKARDLENEISKLQQESGYPYI INIDTANKNNPIDGKIIMSNLCSEILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLM ESPDFGKSVRAMTRALTFVTDASEIDVVPTIQNGNRLSHTIGLGAMGLHTFFAKNHMEYG SEESLDFTDIYFMLLNYWTLMESNQIAKERNQVFHNFEKSDYASGAYFDKYIEGNFTPKF DKVKEIFKDIQIPTAEDWAALRDAVKKDGLYHQNRLAVAPNGSISYINDTSASIHPITRM IEERQEKKIGKIYYPAPYLANDTIPYYTSAYDMDMRKVIDVYATAQQHVDQGMSLTLFMR SEIPEGLYEWKETPKQTTRDLNILRHYAFNKGIKSIYYIRTFTDDAEEIGSNQCESCVI >gi|284795447|gb|ADDQ01000102.1| GENE 19 17589 - 17966 215 125 aa, chain - ## HITS:1 COG:L4702 KEGG:ns NR:ns ## COG: L4702 COG1780 # Protein_GI_number: 15672958 # Func_class: F Nucleotide transport and metabolism # Function: Protein involved in ribonucleotide reduction # Organism: Lactococcus lactis # 1 121 1 129 140 112 43.0 1e-25 MKLVYFSVTGQTRRFIKKLDLPAYELEPANPFFEINEPFILVIPTYDAEITEVVNDFLDY KSNQELLVGVAGGGNRNFAELFVYTAKDIARDYHVPLLYSFEFSGTDEDVETFKKVVEEI ESKRN >gi|284795447|gb|ADDQ01000102.1| GENE 20 17968 - 18192 337 74 aa, chain - ## HITS:1 COG:SP1178 KEGG:ns NR:ns ## COG: SP1178 COG0695 # Protein_GI_number: 15901043 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutaredoxin and related proteins # Organism: Streptococcus pneumoniae TIGR4 # 3 73 2 72 72 85 53.0 2e-17 MNVKIFSKNNCIQCKMAKRFLSENNIAFEEINIDAQPDAIDWLKEQGFQSVPVITSEATT VVGFRPDQLKQLAS >gi|284795447|gb|ADDQ01000102.1| GENE 21 18717 - 19190 549 157 aa, chain + ## HITS:1 COG:L192240 KEGG:ns NR:ns ## COG: L192240 COG1918 # Protein_GI_number: 15672170 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein A # Organism: Lactococcus lactis # 1 154 1 151 152 102 36.0 4e-22 MITLAQAEVGKVYTVESVKADVQTKKHLNNLGVVAGQAVVLVNYQNQNGIVLLHNSRIAL TDTILQAIHVEERSANEKVWVSLDTLKVGERATIVGIHGQGAVKRRLMDMGLTKGTVIFI RKVAPLADPIEINVRGYELTLRKSEAELILVEKEESE >gi|284795447|gb|ADDQ01000102.1| GENE 22 19187 - 21337 2049 716 aa, chain + ## HITS:1 COG:L190009 KEGG:ns NR:ns ## COG: L190009 COG0370 # Protein_GI_number: 15672169 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein B # Organism: Lactococcus lactis # 5 701 4 702 709 819 56.0 0 MTQQIALAGNPNSGKTTTFNMLTGANQYVGNWPGVTVERKEGVAKKDKTLIIQDLPGIYS LSPYTPEEIVARDYLLEDQPSVILNILDVTNLERNLYLTTQLIETGLPVVCALNMMDLLE KNGQTLNSEKLSYGLGVPVVEISALKNRGLDHALKQSKQRANAIETEVIYPSYDNRLEAA LAEIVDILGNTVPESQQRWYSLKLFERDVRTKEQLLLSSFQEKEIEEVIQITEKIFQDES EAIIINERYAFIARLIALCATKKTEMTFTHSDKIDRVVTNRWLALPIFAFVMWLVYYLSI QTVGTMGTDWLNDVFFGEWVPQFVGNWLAQWQVAPWMQSLILDGIIAGVGAVLGFLPQLA VLFLCLGFLEDCGYMARIAFVMDRLFRKFGLSGKSFIPMLIATGCGVPGVMASRTIENER DRRMTIMVTTFMPCSAKLPIIALIAGAFFPNQSWVSPSAYFLGVASIVLSGIALKKTKHF SGDPAPFIMELPAYHLPQLRSVVRHAYERCRSFVKKAGTIIFVSSILIWFMSHYSVTFQP VPESQSILAFLGKGLAVLFIPLGWGNWQGAVATITGLIAKENIIGTLGILFGNVKDVSEN GVEVWGALQHTFTPVAAYSFLTFNLLCAPCFAAIGAIRREMGDLKWTLGAIGYQCGLAYM VSFVIYQLGHVLVEKGTLTLGTFLAMGVVLAGFYFLIRKPKPGKESVQAITSLERG >gi|284795447|gb|ADDQ01000102.1| GENE 23 21344 - 21481 245 45 aa, chain + ## HITS:1 COG:no KEGG:EF0477 NR:ns ## KEGG: EF0477 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 45 1 45 45 75 100.0 5e-13 MATIILSILIFGTAGIITYRRIKKGESCEDCQTACPVKKEQSSQE >gi|284795447|gb|ADDQ01000102.1| GENE 24 21758 - 22927 903 389 aa, chain - ## HITS:1 COG:mlr0475 KEGG:ns NR:ns ## COG: mlr0475 COG0582 # Protein_GI_number: 13470699 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Mesorhizobium loti # 139 385 147 388 399 120 31.0 5e-27 MKLRANIIEKRGTLQVIVSYKDSNGKIRQKWKDTKLKKKGNKKRAEKIRDEFLLELESQL AMECECANPDLLFYDYLLNYLEVSKKQVAFNTYVGYKHYVHNRIYKFFYPKKIKLNRLKP YHLQDFYQYMLNDDCTANTVIHYHAFIRKALQEAVITELISTNVADKVRKPKKKQFVSQV YNQHEILKLLDILSEEKLYLVVLLTAFYGLRRSEVLGLKWSAIDFLNKKIMINHVIIENP ENMSQLIKKDQTKNSSSYRTLPLVETIERALVNQAKWQQDNRILLGEDYILKDSEYVFTM EDGRLMKPQYVTHRLSKLIKKNGLKKIRFHDLRHSNASIMLDSGQNMKSIQEWLGHASYS TTANLYTHLTAGVKERAAEALENAFGFKE >gi|284795447|gb|ADDQ01000102.1| GENE 25 22971 - 23201 220 76 aa, chain - ## HITS:1 COG:no KEGG:EF0480 NR:ns ## KEGG: EF0480 # Name: not_defined # Def: excisionase, putative # Organism: E.faecalis # Pathway: not_defined # 1 76 1 76 76 121 100.0 9e-27 MDFQDYEKIFESYPSILKITDLTKMLNIGKNKAYNLLKDKSIENIKIGARYKIPKKAVIE YILKIQDEGKNHAIIE >gi|284795447|gb|ADDQ01000102.1| GENE 26 23512 - 23622 155 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSNEIANITIIRETLQNYTANEISKHTGLNLSTIKN >gi|284795447|gb|ADDQ01000102.1| GENE 27 23659 - 23739 65 26 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MMLFVSLNLVLKIIEKVLKSTYGSNS >gi|284795447|gb|ADDQ01000102.1| GENE 28 24119 - 24232 63 37 aa, chain - ## HITS:1 COG:no KEGG:EF0481 NR:ns ## KEGG: EF0481 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 37 45 81 81 64 97.0 1e-09 MTNGFNEAEQFITYVDEYMLRQLEIKLIEAILKFKIN >gi|284795447|gb|ADDQ01000102.1| GENE 29 24357 - 24428 79 23 aa, chain - ## HITS:0 COG:no KEGG:no NR:no STSGIWYQRKKAVEQLKTEYYLW Prediction of potential genes in microbial genomes Time: Sun May 15 13:18:16 2011 Seq name: gi|284795446|gb|ADDQ01000103.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont212.3, whole genome shotgun sequence Length of sequence - 2204 bp Number of predicted genes - 5, with homology - 2 Number of transcription units - 4, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 352 215 ## EF0482 hypothetical protein - Prom 376 - 435 1.8 - Term 418 - 465 8.1 2 2 Tu 1 . - CDS 472 - 537 69 ## - Prom 561 - 620 7.9 + Prom 812 - 871 2.3 3 3 Op 1 . + CDS 909 - 1016 168 ## 4 3 Op 2 . + CDS 1047 - 1187 81 ## gi|255973547|ref|ZP_05424133.1| LOW QUALITY PROTEIN: predicted protein 5 4 Tu 1 . - CDS 1883 - 2011 126 ## - Prom 2071 - 2130 6.9 Predicted protein(s) >gi|284795446|gb|ADDQ01000103.1| GENE 1 1 - 352 215 117 aa, chain - ## HITS:1 COG:no KEGG:EF0482 NR:ns ## KEGG: EF0482 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 117 1 117 133 215 100.0 3e-55 MQQNYNEKSIQHQFDAYCKKVLRNEITSIRKRNTNIKYNEEPLTDSTEGKYSQTHFDEQD VYFLFGMEILISDQKLSTAIDHLSEIRRKVILLYYFAGFNNTEIGKILNMSTSGIWY >gi|284795446|gb|ADDQ01000103.1| GENE 2 472 - 537 69 21 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKIRIFFVLYNMYFFSLQLF >gi|284795446|gb|ADDQ01000103.1| GENE 3 909 - 1016 168 35 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQQNYNEKSIQHQFDAYCKKVLRNELKLFENETLE >gi|284795446|gb|ADDQ01000103.1| GENE 4 1047 - 1187 81 46 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|255973547|ref|ZP_05424133.1| ## NR: gi|255973547|ref|ZP_05424133.1| LOW QUALITY PROTEIN: predicted protein [Enterococcus faecalis T2] # 1 46 4 49 49 76 100.0 5e-13 MKLSTLTHFDEQDIYFLFGMEILISNKKLSIAKPVIGHKKFFILQV >gi|284795446|gb|ADDQ01000103.1| GENE 5 1883 - 2011 126 42 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTDDSLLITECILHLTHLFYYLKIYTNNYNHNYRVKGYSLLC Prediction of potential genes in microbial genomes Time: Sun May 15 13:18:34 2011 Seq name: gi|284795445|gb|ADDQ01000104.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont216.1, whole genome shotgun sequence Length of sequence - 3699 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 1, operones - 1 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 13 - 1164 739 ## COG3942 Surface antigen 2 1 Op 2 . - CDS 1190 - 1975 802 ## EF0490 cell wall surface anchor family protein 3 1 Op 3 . - CDS 1998 - 2876 673 ## EF0489 hypothetical protein 4 1 Op 4 . - CDS 2887 - 3147 265 ## EF0488 hypothetical protein 5 1 Op 5 . - CDS 3216 - 3602 319 ## EF0487 hypothetical protein - Prom 3622 - 3681 3.4 Predicted protein(s) >gi|284795445|gb|ADDQ01000104.1| GENE 1 13 - 1164 739 383 aa, chain - ## HITS:1 COG:SPy2025 KEGG:ns NR:ns ## COG: SPy2025 COG3942 # Protein_GI_number: 15675802 # Func_class: R General function prediction only # Function: Surface antigen # Organism: Streptococcus pyogenes M1 GAS # 280 378 407 495 541 67 41.0 4e-11 MNKKRIVFGLLSFFLPIFLVFGGLLFFLLLLTSTSDTSKNDCIQTSINNPTDATDTPKSI EQFVKSHKDAYLLSWKAGGFLPSASISQTMVENGFNFTNPSGTSFWQAHNMGGVKTSKKE DFPVTLATFGQDSVDISGTKPGSNVGDGTGGAYTWFKDYNAGIVGKAEFMAHQTLYTGAI NNTDGLSTLSAIYSGGWATDPTYLMKLQATYNSLGKQFQWLDQEAIQKYGNAPFKKSELV PNIPGKSPITNEKSGKNSDCVVTSDTSDQVTGQNTAPSLEVPSAYKGKLTLPPIDSNDYA GNNYPFGQCTWYAYNRMAQIGKPIEWFSGDGGNGAGWANSARAKGYAVVKGKPSVGWAAS MQGGIGGSAPPYGHVAVVGAKRS >gi|284795445|gb|ADDQ01000104.1| GENE 2 1190 - 1975 802 261 aa, chain - ## HITS:1 COG:no KEGG:EF0490 NR:ns ## KEGG: EF0490 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 261 2 271 271 253 89.0 4e-66 MKKILFASLFSATLLFGGSEISAFAQEIIPDDTTTPPIEVPTEPSTPEKPTDPTPPIEPP VDPVEPPITPTEPTEPTEPTTPTEPEKPVEPTEPTTPTEPTTPTEPSEPEQPTEPSKPVE PEKPVQPAEPSKPIDVVVTPTGELNHAGNGTQQPTVPIETSNLAEITHVPSVTTPITTTD GENIVAVEKGVPLTQTAEGLKPIQSSYKVLPSGNVEVKGKDGKMKVLPYTGEEMNIFLSA VGGILSVVSGFVIFKKRKAKV >gi|284795445|gb|ADDQ01000104.1| GENE 3 1998 - 2876 673 292 aa, chain - ## HITS:1 COG:no KEGG:EF0489 NR:ns ## KEGG: EF0489 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 292 1 292 292 458 96.0 1e-128 MYISFDLEATQAEKIALPVHQRFSLVQGLLLLEQANQEVLATKQGGTIAYFLYTGKEQEL PILEAELLLPVKQKDMLDVLLEPVTNDPTLDPIEVKNFLQLVNQSLPKKQRAKSNKKSTE KKATIDTKPVKKKVFLSVSLITLIGLILLMSGFLLGKTNSTPYQEKELEVKKELNTLTEQ VNEQNKVETFTRFFLTNYYSGKTDAKTRQAVLKKFVKKETLSDFLSEKSRARSMFPWEVK KKDKQWTIAFIVVLINEKDEQSTKKITFTAEETKEQLVVMERPTEEDFELTN >gi|284795445|gb|ADDQ01000104.1| GENE 4 2887 - 3147 265 86 aa, chain - ## HITS:1 COG:no KEGG:EF0488 NR:ns ## KEGG: EF0488 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 86 1 86 86 158 100.0 7e-38 MIILSGLFILGIGIVGGYQLATLPKLIEMKQHKAIQNHFNVKGNEYTYYQEDSENYILSL EDTEYRIKFSKNTPLKVVFTEILEPM >gi|284795445|gb|ADDQ01000104.1| GENE 5 3216 - 3602 319 128 aa, chain - ## HITS:1 COG:no KEGG:EF0487 NR:ns ## KEGG: EF0487 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 128 1 128 128 222 97.0 4e-57 MYVSFILSCLLGFSGYSLLNRLNSLEFVDAWLDKETQKITLKRCFYDTSFKKQTLKELER VYFQLKEIINVQINKRSLNTNDIRNVRELEEKQQEIKRFMLDVLEDAYWKELANMPEDQR HLDDWDFF Prediction of potential genes in microbial genomes Time: Sun May 15 13:18:50 2011 Seq name: gi|284795444|gb|ADDQ01000105.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont225.1, whole genome shotgun sequence Length of sequence - 2281 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 33 - 92 2.9 1 1 Op 1 . + CDS 118 - 603 676 ## COG3542 Uncharacterized conserved protein 2 1 Op 2 . + CDS 723 - 1121 435 ## COG3607 Predicted lactoylglutathione lyase + Term 1128 - 1165 7.3 - Term 1106 - 1162 15.8 3 2 Tu 1 . - CDS 1172 - 2068 1144 ## COG1284 Uncharacterized conserved protein - Prom 2094 - 2153 7.0 Predicted protein(s) >gi|284795444|gb|ADDQ01000105.1| GENE 1 118 - 603 676 161 aa, chain + ## HITS:1 COG:SP2081 KEGG:ns NR:ns ## COG: SP2081 COG3542 # Protein_GI_number: 15901897 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 7 155 2 150 153 155 58.0 3e-38 MTEQMWIEKLGLEAHPEGGYFKQTNKSEQLIPTKRGERALHTAILFLLNTESPSHFHRLK ADELWFFHDGQPLTVHCIFPDGTYQAVQLGKDLVQGQQLSFSVPAGTIFGSTVATGFALV SCVVTPGFEFEDFELFTQAELLNDYPQHSEIIQHLAYRELP >gi|284795444|gb|ADDQ01000105.1| GENE 2 723 - 1121 435 132 aa, chain + ## HITS:1 COG:L151700 KEGG:ns NR:ns ## COG: L151700 COG3607 # Protein_GI_number: 15673301 # Func_class: R General function prediction only # Function: Predicted lactoylglutathione lyase # Organism: Lactococcus lactis # 1 130 1 130 137 159 60.0 1e-39 MGTMVFVNFPVADVQRSTAFYEKLGFKKNEEFSTEEASSMMWDDQFWIMLLNHDFYGKFI QEKQIIDAQTTSGALISFSLESAEAVKQFGETAKANGGNCYRVDMGIPEEQTYGLEVQDL DGNSLEPVWMKM >gi|284795444|gb|ADDQ01000105.1| GENE 3 1172 - 2068 1144 298 aa, chain - ## HITS:1 COG:SPy2209 KEGG:ns NR:ns ## COG: SPy2209 COG1284 # Protein_GI_number: 15675941 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pyogenes M1 GAS # 8 282 3 277 290 229 48.0 4e-60 MNKFFTAQRLKDTAYVTVGAFILAISINAVLLPNKLVAGGANGISIVINYVFGISPAIVL YAINIPLLVLCFLLLGKEVGVKTIYGSLIYPFFVGITSGMPVLTHNIFLAALFGGIITGA GLGLVFRGNASTGGTAIISQIVNKYFKVSLGIAILFVDGLVILSAMYAFNADIVLFSLIC LFTIGRVVDMIQVGLVRSKNVMIISPKYVAIQERLLRELDKGVTLVPIEGGYRSAKGMLL MTVIREKDFPRLKEAILDIDEEAFLISMSASEVYGKGFSLKKVADSYGVEATNANNLQ Prediction of potential genes in microbial genomes Time: Sun May 15 13:18:53 2011 Seq name: gi|284795443|gb|ADDQ01000106.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont226.1, whole genome shotgun sequence Length of sequence - 5622 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 4, operones - 3 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 745 690 ## COG5263 FOG: Glucan-binding domain (YG repeat) 2 1 Op 2 . + CDS 755 - 1132 298 ## EF0122 hypothetical protein + Term 1230 - 1282 4.1 + Prom 1134 - 1193 4.8 3 2 Tu 1 . + CDS 1300 - 1845 664 ## EF0120 hypothetical protein + Term 1849 - 1903 14.2 - Term 1837 - 1890 11.5 4 3 Op 1 . - CDS 1893 - 2681 920 ## COG0384 Predicted epimerase, PhzC/PhzF homolog 5 3 Op 2 . - CDS 2683 - 3648 839 ## COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog - Prom 3679 - 3738 4.4 + Prom 3655 - 3714 6.8 6 4 Op 1 . + CDS 3746 - 5158 1101 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs 7 4 Op 2 . + CDS 5155 - 5598 400 ## COG4815 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|284795443|gb|ADDQ01000106.1| GENE 1 2 - 745 690 247 aa, chain + ## HITS:1 COG:L88643 KEGG:ns NR:ns ## COG: L88643 COG5263 # Protein_GI_number: 15674205 # Func_class: R General function prediction only # Function: FOG: Glucan-binding domain (YG repeat) # Organism: Lactococcus lactis # 85 247 311 481 483 88 36.0 1e-17 DVSRYYDVYYRVHIQDKGWLNWAANGASAGSQAASKHLEAIQIKIVRKGETAPKGSGKAF LVGDEARTPAEIANRLRAERLKKKPYYYSQRDPQWINTYIGNYTIGVAGCVPTSLSMILR GSYGYNVNPVSVATRMASYGGLNQRYFGASATDLVITAQSYGRSIKVINDVATLNAYLSE GYPVILYQNVGIGHAIVVHEYKNGYTLTYDPYGRQFYSGWVSTQALWNTPSNDPIDWTEG RPCFVIL >gi|284795443|gb|ADDQ01000106.1| GENE 2 755 - 1132 298 125 aa, chain + ## HITS:1 COG:no KEGG:EF0122 NR:ns ## KEGG: EF0122 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 125 1 125 125 105 97.0 5e-22 MKKKLIVLSLALLLTACSNNTGGKNSDASSTEVSTKQQTTQSSKKDSSNPDTTPTSTSSI TIETTENLKNRELNPTDDVSKTRRQLYEQGINSSTITDKELKEYISEAKEQKKDVIDYIK QKINQ >gi|284795443|gb|ADDQ01000106.1| GENE 3 1300 - 1845 664 181 aa, chain + ## HITS:1 COG:no KEGG:EF0120 NR:ns ## KEGG: EF0120 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 4 181 1 178 178 344 98.0 1e-93 MEKMYRSPYEAYPYLSSKPEDLRCDFELMTDELASMTGLLRGYVQQLDVPEQPALTEELA KICELIYHVNPTTRTKLTVTEDEISWLLERVNAMNELTYEENRPFVLPMGTICSSYAHIL RAKAKDIVRLLYRMDYGGKKIDPQLYDVVNLLSGYFFMLALYLNKLENGEEVPFVSRNYS I >gi|284795443|gb|ADDQ01000106.1| GENE 4 1893 - 2681 920 262 aa, chain - ## HITS:1 COG:PA3578 KEGG:ns NR:ns ## COG: PA3578 COG0384 # Protein_GI_number: 15598774 # Func_class: R General function prediction only # Function: Predicted epimerase, PhzC/PhzF homolog # Organism: Pseudomonas aeruginosa # 1 260 1 260 261 234 48.0 2e-61 MSYPYYIVDAFAEEVFKGNPAAVYVLEKWWPEAVMQNIAIENNLSETAFTVKEGKSYALR WFTPEREIDLCGHATLATAFVLFNYYSVAEETLHFTSQSGPLAVTKKEEYYYLDFPYILP ERIPILPEYEAALGTKIYEAYLGRDLFFVLKDEETVAKITPDFSALKALDLGVGVIVTAP GDSVDFVSRTFFPKLRINEDPVCGSAHANLIPYWGKRLNQMTLSAYQVSPRGGFLTCEVK ENRVIIGGTAKLFAKGEAYLPV >gi|284795443|gb|ADDQ01000106.1| GENE 5 2683 - 3648 839 321 aa, chain - ## HITS:1 COG:MTH1495 KEGG:ns NR:ns ## COG: MTH1495 COG2423 # Protein_GI_number: 15679492 # Func_class: E Amino acid transport and metabolism # Function: Predicted ornithine cyclodeaminase, mu-crystallin homolog # Organism: Methanothermobacter thermautotrophicus # 55 320 65 330 339 159 33.0 5e-39 MDIISYERVIQQLSFSEAIQVMKRCFAELQKGKISQSERHVEVLPDGENQNLFALMPAYL GKNRFFGAKIITAFPENPQKNLASHLGQILLFDSSTGRPVAMMDANAITWLRTAAVSALA TDYLAAPEAKSIALIGAGQQASSHLAALQSVRAIEKVFIYDRTAERARKLIAKQQHNYPE CTFIGCSSVQEAVQEAEIICTLTSSQDAFLEEKDVLPNAHINAIGTFTPTSRELTSDLVK NSQVFVDEYAAALKESGDLLIPISEGAFSAEKIVGSLGELVTGKVKLKAEQKGRTIFDAV GLAVEDLCCAEYIYQKIQGEN >gi|284795443|gb|ADDQ01000106.1| GENE 6 3746 - 5158 1101 470 aa, chain + ## HITS:1 COG:BS_ydeF KEGG:ns NR:ns ## COG: BS_ydeF COG1167 # Protein_GI_number: 16077585 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Bacillus subtilis # 1 462 4 464 465 258 33.0 2e-68 MPINSYENYALSWRPVKERLTRPYYQSLVQQLEADILSGALQKNVKLPSQRELADYLDLN FTTIGQAYKHAMEKGLLYTNIGSGTFVSPNAFHSITISTNQVADHLIDLGLVSSFDMCNQ RILPFIESVSKNAALNSLLNYRDPLGTHFQRATAAEWLQTQGVWTNAEEVAIVSGVQNGL AVTLAAAFSPGQRIAVDRYTYSNFIELAQLYHLEIVPIGYDSEGMDPEHLLQECKKKKIH GIFLMPACNNPIGFQMSSARRMTLAEIIQQEHLWVIEDDIHSFLTTYAQQAVLPTFQELL PQQTIYLAGMTKFVCTGLRIAYLVFPPLLRQEIERAIFNINVKTSGFDAEIVTQVLRSPV AEELVIEKLALTKQANDLFDAIFGLARPSNPLPYYRTIPLSTEKTAPQIEQEFLQNGVRL FHSSRFTVQNQPDAFLRISLASNQLEVLAKGLTIIQELLPTLNEKKGHSL >gi|284795443|gb|ADDQ01000106.1| GENE 7 5155 - 5598 400 147 aa, chain + ## HITS:1 COG:lin1093 KEGG:ns NR:ns ## COG: lin1093 COG4815 # Protein_GI_number: 16800162 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 6 145 6 145 151 143 49.0 8e-35 MNSLPILEKAVGAITLLSEEKQNAEYEGFLCQVNESQQLIRSRLAKKTPKKEGYFVAFWE KNQQNQNEAFDATEAPEMLAIVIADQEKQGLFLLPKECLIQQKILKTHQQKGKMAARFYP SWCQNLNQTAKKTQKWQLAYFTDLSKY Prediction of potential genes in microbial genomes Time: Sun May 15 13:19:05 2011 Seq name: gi|284795442|gb|ADDQ01000107.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont226.2, whole genome shotgun sequence Length of sequence - 22300 bp Number of predicted genes - 21, with homology - 21 Number of transcription units - 12, operones - 6 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 40 - 1308 1292 ## COG0251 Putative translation initiation inhibitor, yjgF family - Prom 1335 - 1394 7.1 - Term 1516 - 1561 14.6 2 2 Op 1 . - CDS 1593 - 4079 449 ## PROTEIN SUPPORTED gi|149001861|ref|ZP_01826834.1| 30S ribosomal protein S4 - Prom 4149 - 4208 8.4 3 2 Op 2 . - CDS 4311 - 5327 1102 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases - Prom 5385 - 5444 6.2 + Prom 5420 - 5479 5.0 4 3 Op 1 . + CDS 5507 - 5842 448 ## EF0110 ArsR family transcriptional regulator 5 3 Op 2 . + CDS 5839 - 6519 593 ## COG0693 Putative intracellular protease/amidase + Term 6522 - 6565 11.7 - Term 6505 - 6558 18.1 6 4 Op 1 . - CDS 6610 - 8061 1423 ## COG1288 Predicted membrane protein 7 4 Op 2 . - CDS 8109 - 8798 419 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 8 4 Op 3 8/0.000 - CDS 8826 - 9758 1205 ## COG0549 Carbamate kinase - Prom 9780 - 9839 4.0 - Term 9782 - 9824 9.4 9 5 Op 1 7/0.000 - CDS 9864 - 10883 1434 ## COG0078 Ornithine carbamoyltransferase 10 5 Op 2 1/0.000 - CDS 10912 - 12138 1429 ## PROTEIN SUPPORTED gi|149020061|ref|ZP_01835035.1| 50S ribosomal protein L33 - Prom 12303 - 12362 19.4 - Term 12380 - 12432 10.4 11 6 Tu 1 . - CDS 12435 - 12923 484 ## COG1438 Arginine repressor - Prom 12974 - 13033 6.0 + Prom 12927 - 12986 6.0 12 7 Tu 1 . + CDS 13165 - 13644 439 ## COG1438 Arginine repressor + Term 13715 - 13749 3.1 + Prom 13731 - 13790 8.4 13 8 Tu 1 . + CDS 13811 - 14746 648 ## COG2267 Lysophospholipase - Term 14718 - 14757 8.6 14 9 Op 1 . - CDS 14762 - 16033 1341 ## COG0172 Seryl-tRNA synthetase 15 9 Op 2 9/0.000 - CDS 16060 - 16953 1236 ## COG1760 L-serine deaminase 16 9 Op 3 1/0.000 - CDS 16968 - 17675 859 ## COG1760 L-serine deaminase 17 9 Op 4 . - CDS 17650 - 18750 1432 ## COG1299 Phosphotransferase system, fructose-specific IIC component - Prom 18882 - 18941 7.1 + Prom 18751 - 18810 9.9 18 10 Tu 1 . + CDS 19007 - 19687 623 ## COG2964 Uncharacterized protein conserved in bacteria + Term 19692 - 19744 11.0 - Term 19678 - 19729 18.3 19 11 Op 1 . - CDS 19746 - 20531 767 ## EF0095 putative lipoprotein - Prom 20559 - 20618 5.0 - Term 20624 - 20665 10.0 20 11 Op 2 . - CDS 20687 - 21448 939 ## COG2116 Formate/nitrite family of transporters - Prom 21545 - 21604 7.0 21 12 Tu 1 . - CDS 21948 - 22298 446 ## gi|293388597|ref|ZP_06633098.1| putative histone protein Predicted protein(s) >gi|284795442|gb|ADDQ01000107.1| GENE 1 40 - 1308 1292 422 aa, chain - ## HITS:1 COG:PH0854 KEGG:ns NR:ns ## COG: PH0854 COG0251 # Protein_GI_number: 14590714 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Pyrococcus horikoshii # 297 412 18 134 137 102 44.0 2e-21 MSNENIVLARNTERAPKHPLAAQTVAFSHYNHLSAQLPIEPTSGQLVEGGIRAQATQCLK NIQAVVESINHVMSDIVRMTIFVKDMRDAAAVEEVYAAFFTHYYPAKTVVAVADLPLGAS VQMEALVSNGEGTIPNAPQAGDLIKLTNQTVQAPIDALASQTVAFSHYNNLSAQLPIDPQ TGRVVAGCVKTQTKQCLKNIKAILTSIDVPFDDIVKVNIYLKDLSKLEAVNQVYAAFFPD SGIARTVNYMPARTVIAVADLPMGAAVQVEAVVSHGDGTPPQAIEDRHGLIIEANNTDHA PKCPFSTQTVAFSHYNHLSAQLPLDPKTNALVAGGIKEQTTQCLENIKAIIESVDHSLAD LVKVNIFVKEIEELAAVDDVYQTYFPEGTPARRVIGVTDLPKGAQIQIEAIAGNAEGTPP IG >gi|284795442|gb|ADDQ01000107.1| GENE 2 1593 - 4079 449 828 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149001861|ref|ZP_01826834.1| 30S ribosomal protein S4 [Streptococcus pneumoniae SP14-BS69] # 620 824 1 209 539 177 41 5e-44 MVFKVGNNLSTRKGENRETIVSWLGLSLLVGLAFILFSLFHQPMISQANEPTQEKHFMVY YRAWRDKTMQGVNTTLPDENWLTMHDIPYGIDIVNVFSYVPKGQEALAQPFYDTLKNEYA PALHARGVRLVPGIDYSELLKVPYAGTTPTEAEFDAYAKELLTKFVDDLGIDGLDIDMET RPSEKDIVLSNGVIRALSKYIGPKSGTDRPFLYDTNAEYLPPLQDVSDCFDFLAYQQYGS DDQRTQRALNNLSPVLNGERFVPGLTFPEEQDRNRWYDTKEPYMESNMYKVARYSYENNL GGMFLYALDRDGRTYNEDDLNQIKPSNLLWTKTAIAESKGVSLAEMKAAAQHYLKRISYA NTDLEAQNKAAEAVTQATTLYDVNKAILGGDYGQGISNTYDAELEKGLLAIDLTTLYRAL DQAVTAIEKAESYTPETIQALQTTKETVATELAGKTYTAAQVTTWQTEVQTALDNLKEKQ TQPLKSVFSIDAGRKYFSVEQLEELVAKASQNGYTDVQLILGNDGLRFILDDMSVNVNGK KYNHNRVSKAIQRGNNAYYNDPNGNALTQKEMDRLLAFAKARNINIIPVINSPGHMDALL VAMEKLAIKNPAFDGSKRTVDLGNQKAVNFTKAIISKYVAYFSAHSEIFNFGGDEYANDV DTGGWAKLQSSGRYKDFVAYANDLAKIIKDAGMQPMSFNDGIYYNSDDSFGTFDPEIIIS YWTAGWSGYDVAKPEYFVQKGHKIFNTNDAWYWVAGNVDSGIYQYDDALANMSKKAFTDV PAGSPNLPIIGSIQCVWYDDPSRDYDFERIYTLMDTFSENYREYMVVK >gi|284795442|gb|ADDQ01000107.1| GENE 3 4311 - 5327 1102 338 aa, chain - ## HITS:1 COG:AGpA656 KEGG:ns NR:ns ## COG: AGpA656 COG0604 # Protein_GI_number: 16119675 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 2 333 26 358 359 296 48.0 4e-80 MMKAALIHKYGQKELAIEEVPLPTIHDNDVLVKIIAASINPIDLKTKDGKVKMLLNYQMP LILGSDFAGIVVSVGKNVQNFRLGDAVYGRVPKNRVGTFAEYIAVDQAAVAMKPKNLTFE EAAAIPLVGLTSYQALHDIMNVQPGQKVLIQAGSGGIGTIAIQLAKLAGAYVATTTSSKN KEWVQVLGADEVIDYRTQNFEEVLSDYDYVFDTMGGTILEKAFSVVKPQGKVVTLSGIPN ERFAKEYGLPLWKQWAFKIATRKIHRLEQATDVSYHFLFMRPDGEQLALLTEFIEQGKLQ PIIDRVVPFSQIQEAVDYSLTGRAQGKIVVKIADVDHD >gi|284795442|gb|ADDQ01000107.1| GENE 4 5507 - 5842 448 111 aa, chain + ## HITS:1 COG:no KEGG:EF0110 NR:ns ## KEGG: EF0110 # Name: not_defined # Def: ArsR family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 111 1 111 111 187 99.0 9e-47 MKELEGIQTEFTALSDFLIALGDEKRQAIIIALLEDQACVGRRVTELTEATQLSRPAVSH HLKILKQAKLIDCRSEGTKNYYSLSHDTTKIEQLQQLLTHITSIMPGRKQA >gi|284795442|gb|ADDQ01000107.1| GENE 5 5839 - 6519 593 226 aa, chain + ## HITS:1 COG:BMEII1016 KEGG:ns NR:ns ## COG: BMEII1016 COG0693 # Protein_GI_number: 17989361 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Brucella melitensis # 2 221 3 224 235 180 43.0 2e-45 MKKILVVLTNVSRYHGTEEPTGLWLGEATEFVEEVTKAGFSVDYVSPQGGYVPLDPRSMK YVDSSIMAVYESADFQERALAHSLSLEEIEPDEYAAIYFTGGHGVMWDFPDNPQLQAITR SLYEQGKYLTSVCHGIAGLLNVKDASGNYLIADKTITGFTTAEEILAMKKAVVPFLNETI AKEHGATFAKKRPYKEFAYQDGRIITGQNPFSVRAVARLLIQQLSK >gi|284795442|gb|ADDQ01000107.1| GENE 6 6610 - 8061 1423 483 aa, chain - ## HITS:1 COG:SPy1543 KEGG:ns NR:ns ## COG: SPy1543 COG1288 # Protein_GI_number: 15675441 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 1 462 1 478 497 285 37.0 1e-76 MAEKKKKNKKQLSSFSILFIILIVLGIVTVLLNGQPFTPREIDGKMVDHVVGAKLSDIIM APFNGFKDAIEINIFILVLGGFLNIVTQTGALEAGIQSVVKKLKGNELKIIPILMILFSI GGSTYGMAEETIPFYGLLSATMVAAGFDTFVAVGTVLLGAGSGVIGSTVNPFSTGVAMDA LRGIGIQPNTGIILIVGAILWAASTSYSIFIVMRYAKKVKADKGSTILSLQEQEDMEKTY GQAASKEMPFTNRHKKILMVFAFCFVIMIVSLIPWNDFGVTIFKGWTSVLTGNSFGDWYF GDLAMWFFLLGIIAALIGRFTEKETIEAFIDGAKDMLSVVLIIVVARGASVLMSKTYLDS FILDKAAGLLQGLSPVLFVIGAFVLYLGLSFLIPSTSGLAYVSIPVMGALAKNIGLSPEV MVMIFASGCGLINLITPTSGVVMGGLEISKVQYATWTKFMAKPMIVLGLINLIILIGAML LFS >gi|284795442|gb|ADDQ01000107.1| GENE 7 8109 - 8798 419 229 aa, chain - ## HITS:1 COG:SPy1548 KEGG:ns NR:ns ## COG: SPy1548 COG0664 # Protein_GI_number: 15675445 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Streptococcus pyogenes M1 GAS # 12 224 15 222 226 139 36.0 5e-33 MIEKIITKNNQDFQYFSESELTELRNESFVRSYKKGQVLFYPGDPRNHLILLVSGVIKIE KNDRSGNFSYLHFMKKQALFPRIGLFQDEVHYDSAIAYTDIEVVFVPVKLFERFLQNNPQ QLIHWIQEQSVLLKESMIKIQKGTTNDACERIVTSLAMLLNDLGERIDNRERVAITCPIT INDIARMSGTTRETASSVMKKLVQMNRISYSHKFLTFLDTPFFIDRLSN >gi|284795442|gb|ADDQ01000107.1| GENE 8 8826 - 9758 1205 310 aa, chain - ## HITS:1 COG:SPy1541 KEGG:ns NR:ns ## COG: SPy1541 COG0549 # Protein_GI_number: 15675439 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Streptococcus pyogenes M1 GAS # 3 295 4 301 316 353 66.0 2e-97 MGKKMVVALGGNAILSNDASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNGPQVGNLLL QQQAADSEKNPAMPLDTCVAMTQGSIGYWLSNALNQELNKAGIKKQVATVLTQVVVDPAD EAFKNPTKPIGPFLTEAEAKEAMQAGAIFKEDAGRGWRKVVPSPKPIDIHEAETINTLIK NDIITISCGGGGIPVVGQELKGVEAVIDKDFASEKLAELVDADALVILTGVDYVCINYGK PDEKQLTNVTVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITSLENLGSMSG DEIVGTVVTK >gi|284795442|gb|ADDQ01000107.1| GENE 9 9864 - 10883 1434 339 aa, chain - ## HITS:1 COG:SPy1544 KEGG:ns NR:ns ## COG: SPy1544 COG0078 # Protein_GI_number: 15675442 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 339 1 337 337 551 78.0 1e-157 MNSVFQGRSLLAEKDFTRAELEYLVDFSIHLKELKKKGIPHHYLEGKNIALLFEKTSTRT RSAFTTAAIDLGAHPEYLGANDIQLGKKESVEDTAIVLGSMFDGIEFRGFSQEVVEDLAK YSGVPVWNGLTDQWHPTQMIADFMTVKENFGRLEGITLVYVGDGRNNMANSLLVTGAILG VNVRICAPKELFPSDEVVNYAKEFAKESGAELMITDDVAKGVKGANVLYTDVWVSMGEED KFEERVNLLKPYQINMAMLEKTENMDGDLIVLHCLPAFHDTKTQYGEMVAEKFGITEMEI TDEVFRSKYGRQFEEAENRMHSIKAIMAATLGNLFIPRV >gi|284795442|gb|ADDQ01000107.1| GENE 10 10912 - 12138 1429 408 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149020061|ref|ZP_01835035.1| 50S ribosomal protein L33 [Streptococcus pneumoniae SP23-BS72] # 2 408 3 409 409 555 67 1e-157 MSHPINVFSEIGKLKTVMLHRPGKELENLMPDYLERLLFDDIPFLEKAQAEHDAFAELLR SKDIEVVYLEDLAAEALINEEVRRQFIDQFLEEANIRSESAKEKVRELMLEIDDNEELIQ KAIAGIQKQELPKYEQEFLTDMVEADYPFIIDPMPNLYFTRDNFATMGHGISLNHMYSVT RQRETIFGQYIFDYHPRFAGKEVPRVYDRSESTRIEGGDELILSKEVVAIGISQRTDAAS IEKIARNIFEQKLGFKNILAFDIGEHRKFMHLDTVFTMIDYDKFTIHPEIEGGLVVYSIT EKADGDIQITKEKDTLDNILCKYLHLDNVQLIRCGAGNLTAAAREQWNDGSNTLAIAPGE VVVYDRNTITNKALEEAGVKLNYIPGSELVRGRGGPRCMSMPLYREDL >gi|284795442|gb|ADDQ01000107.1| GENE 11 12435 - 12923 484 162 aa, chain - ## HITS:1 COG:SPy2150 KEGG:ns NR:ns ## COG: SPy2150 COG1438 # Protein_GI_number: 15675892 # Func_class: K Transcription # Function: Arginine repressor # Organism: Streptococcus pyogenes M1 GAS # 1 146 1 139 145 76 34.0 2e-14 MNKQTRQSLIKEIIQTTVIHSQNELLRELKKREINVAQATISRDLWELKVVKALDECGEM RLTIFEQFTSLEERKKEQLIQAIREVVTKVERVAFLLVVHTLPDNATLFSAVLDEVSLCE KKCSVAGFDTVIIVSSSEEKAQELEQYFQQFIQPTPLSKSNA >gi|284795442|gb|ADDQ01000107.1| GENE 12 13165 - 13644 439 159 aa, chain + ## HITS:1 COG:lin1404 KEGG:ns NR:ns ## COG: lin1404 COG1438 # Protein_GI_number: 16800472 # Func_class: K Transcription # Function: Arginine repressor # Organism: Listeria innocua # 1 152 1 145 149 96 35.0 2e-20 MNRLKRQTMIKRLVTENEIHTQSELLALLEKENIHTTQATISRDIRELNLNKVDNGQGEA YYRILNNSALRPKYKTDEERLVDIIIETGVSLTQIEFTNLLTVLPGNGQAIGVLIDRIRI HNPHILGCIAGDDTILILSKNKEDALEVNNYFQQYLYHP >gi|284795442|gb|ADDQ01000107.1| GENE 13 13811 - 14746 648 311 aa, chain + ## HITS:1 COG:lin1226 KEGG:ns NR:ns ## COG: lin1226 COG2267 # Protein_GI_number: 16800295 # Func_class: I Lipid transport and metabolism # Function: Lysophospholipase # Organism: Listeria innocua # 1 299 1 299 306 204 38.0 2e-52 MTEQFILTSNDQQTQLNVRHWPCPSPKAVVQLIHGMAEHIQRYDEFARFLNQLGFAVIGH DHLGHGESVQPSAPIYGFFGEQGPENVVTDIHQVKQWAVNRYPQLPYFMMGHSMGSFALR NYLQDYPVTVQGVIFMGTGTSPLPLTAALPFIKKMAEKQPKKPAPFIDKLAFGSFSKKFP EASSFNWLSKNQANVADYENDPLMGFVFTNNGFATLFSLVKRANQRNWYQAIPKELPILI ISGAEDPVGDFSKGPAKIQKQLKHAGFQHVTLRLFPTLRHEILLETEKATVFQEIGHWLT DLTNKKRRLML >gi|284795442|gb|ADDQ01000107.1| GENE 14 14762 - 16033 1341 423 aa, chain - ## HITS:1 COG:SPy1742 KEGG:ns NR:ns ## COG: SPy1742 COG0172 # Protein_GI_number: 15675591 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 422 1 422 425 611 71.0 1e-175 MLDMKKIRQNVEVVQKKLKTRGVDEEVLLRFLALDEERRALLVKVEELKKHRNQVSGEIA QLKRAQKDASQQLLNMQEVSEQIKVLDQEVVHLQEQCTAIAERLPNLPHESVPVGADEAA NVEVRRWSTPKTFSFEPKPHWEIGEALGILDFERGAKVSGSRFLYYKGLGARLERAVYNF MLDQHVNEHGYTEVIPPYLVNSKAMFGTGQFPKFKEDVFQVAESDLTLIPTAEVPLTNYY NNEILDAQELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKFSDAEHSYEELE KMTNNAGDILEKLGLPYRVITLSTGDMGFSAAKTYDLEVWIPAQKTYREISSCSNCEDFQ ARRALIRYRDKTGHVQYAHTLNGSGLAVGRTVAAILENYQNEDGTVTIPEVLRPYMGGLT KID >gi|284795442|gb|ADDQ01000107.1| GENE 15 16060 - 16953 1236 297 aa, chain - ## HITS:1 COG:SA2318 KEGG:ns NR:ns ## COG: SA2318 COG1760 # Protein_GI_number: 15928109 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Staphylococcus aureus N315 # 1 289 1 289 299 304 62.0 1e-82 MYLSIEEFIDKAEKTGKKISDLMIEQEMERSQKSYEEIWTQMGQNLDVMDAAVKRSQEGA GVFSPTGLTGGDAARLKKYRAAGKTLSGDLMMSAVQAALGTNEVNAAMGVVCATPTAGAS GTLPGVLTAIKNTLNLTRDQQIRFLFTSSLFGMVTANNAMIAGAVGGCQAEVGSASAMAA AAAVEAAGGTPRQSSEAFAMALGNLLGLVCDPVAGLVEIPCVKRNTVGAGNALIAADMAL AGIVNKIPADEVVEAMNKVGRQLPRELRETGLGGLAGTATGQRMKNEIFEKVKFTIV >gi|284795442|gb|ADDQ01000107.1| GENE 16 16968 - 17675 859 235 aa, chain - ## HITS:1 COG:BH2497 KEGG:ns NR:ns ## COG: BH2497 COG1760 # Protein_GI_number: 15615060 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Bacillus halodurans # 17 212 1 195 220 164 44.0 2e-40 MNTAMAINKPKKVNKVMNYKSCFDIIGPIMIGPSSSHTAGALAIGLAARKLFGGTPEKIV IKYYESFADTHKGHGTDFAIIGGILGLAADDANVTQSIELAEEQGIEIQFLEMSEESPVK HANTACVTLCDATHEIHLTGISVGGGTIEVKYIELDGFNVQLHGPLPILLVINQEEQAMQ AFKDTLQKNNIQVNAVSRYVEGNQILFIFDLDSAPISSVKEQLFSLDDTSKIILL >gi|284795442|gb|ADDQ01000107.1| GENE 17 17650 - 18750 1432 366 aa, chain - ## HITS:1 COG:SA2320 KEGG:ns NR:ns ## COG: SA2320 COG1299 # Protein_GI_number: 15928111 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Staphylococcus aureus N315 # 1 333 1 333 347 273 49.0 3e-73 MKTLSGILMLVLVLCGMSLFSFKAPRGKKSLSALSGAACATFLPEAFLRYAVGGVFHLDY VSQIGETMGSLGGLAAGALVPLAFGISPVFSIILGLSLIKVSLLPAFITAYLLSFVVEQM QKRIPEGIDLLVVILVIPVAASLVAGFIQPVVLGVLEVIGGTILSAVDGNPYVMGAILGA IIPIVGMTPLSSMVLTALIGLTGVPMAVGALTCYGSSIVNAALFKKLKLGTASTPLAVAI EPLTQVDIISSNPIPIYATNLISGMVSGIVVTFFGLKVPVTGMATPWAGLLVTLGNNAIQ TTLLAVAIITVVSLMFGFLGALVFKRYRIEAVDNTPEFEGTTEVTSEKEAVKTKGGVTYE HSYGHQ >gi|284795442|gb|ADDQ01000107.1| GENE 18 19007 - 19687 623 226 aa, chain + ## HITS:1 COG:VC0355 KEGG:ns NR:ns ## COG: VC0355 COG2964 # Protein_GI_number: 15640382 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Vibrio cholerae # 7 225 23 237 240 172 38.0 6e-43 MESYLRLSEVDKQILHSHALMLDGLGNFFGSTHEVILHSLENLESSAIKVINGHFSNRKE GAPITDMALKMLSQVESEHDYAVKPYYNKNQKGVILKSSTIPVIGENDRIIGLICINMHL EMPLIDYLQDLLPSGQQNDMSQELKNSEHFSDNIDELITTSLTKVKQAVESDPNVSHLNQ NKEIVIRLYDQGIFNLKDSVIKIADRLGISKNTIYLHIRNHKKEEA >gi|284795442|gb|ADDQ01000107.1| GENE 19 19746 - 20531 767 261 aa, chain - ## HITS:1 COG:no KEGG:EF0095 NR:ns ## KEGG: EF0095 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 261 1 261 261 392 98.0 1e-108 MKKIALFSMLTFSVLSLSLAGCGNKKTASTNDSKPKQETKKATQKSSSQQEMKNSHSSVA GQNSNVAGENPSENVTQPSAGTDETNEVPQNQAPDTNITITNVVFNPERNEINGTTLPNA TITATVVGDASAQAGVFYADANGNFTVISPRAGATTQLIATVDQRNSAPVQIDIPSSGQE AALSFSNITIDPKQGTISGKTAPNATILVSRADDARVILASFTADAQGNFTASNLVPGTK NRLDVTLNGEIGTPYLFDLPN >gi|284795442|gb|ADDQ01000107.1| GENE 20 20687 - 21448 939 253 aa, chain - ## HITS:1 COG:L195318 KEGG:ns NR:ns ## COG: L195318 COG2116 # Protein_GI_number: 15672950 # Func_class: P Inorganic ion transport and metabolism # Function: Formate/nitrite family of transporters # Organism: Lactococcus lactis # 1 253 1 253 264 317 65.0 1e-86 MYTPDEILSISIENGQKKIQKPLVAKLILGFIGGAMISLGYLAYVRVSASIPADLASVQA LVGAAVFPIGLIVILMAGGELITGNMMAVSTAWFAKKVSFRELLVNWVTITLANMVGALF VAYFFGHYLGLTSSGAYLNQVLSLAEHKVAATWLQAIISGIGCNWFVGLALWLCYGAKDA AGKLLGIWFPVMIFVAIGFQHSVANAFIIPAAIFEGGVQWGDFFRNFIFVYLGNIIGGAI FVSGFYYLSYRKH >gi|284795442|gb|ADDQ01000107.1| GENE 21 21948 - 22298 446 116 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293388597|ref|ZP_06633098.1| ## NR: gi|293388597|ref|ZP_06633098.1| putative histone protein [Enterococcus faecalis S613] # 1 116 1 116 116 117 97.0 3e-25 VIPAKAAPQARQVKAVVPAKATRQAQLAKPVIPAKAAPQVRQVRAVVRVKATRQAQPAKL VVPAKVVPQVRQVKQAIQMKATHQVQPVKQVVPAKVVLQVRPAQPTVQVRVAPQAL Prediction of potential genes in microbial genomes Time: Sun May 15 13:19:21 2011 Seq name: gi|284795441|gb|ADDQ01000108.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont226.3, whole genome shotgun sequence Length of sequence - 15726 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 4, operones - 3 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 2487 2054 ## EF0093 cell wall surface anchor family protein 2 1 Op 2 . - CDS 2502 - 2741 361 ## EF0092 hypothetical protein - Term 2938 - 3002 20.5 3 2 Op 1 . - CDS 3086 - 4591 1319 ## EF0091 hypothetical protein - Prom 4612 - 4671 4.2 4 2 Op 2 . - CDS 4673 - 5584 1066 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase - Prom 5631 - 5690 8.3 - Term 5792 - 5850 18.2 5 3 Tu 1 . - CDS 5861 - 11959 6326 ## COG4932 Predicted outer membrane protein - Prom 12016 - 12075 3.8 6 4 Op 1 . + CDS 12670 - 14157 1001 ## EF0086 hypothetical protein 7 4 Op 2 . + CDS 14151 - 15635 1109 ## EF0085 hypothetical protein Predicted protein(s) >gi|284795441|gb|ADDQ01000108.1| GENE 1 3 - 2487 2054 828 aa, chain - ## HITS:1 COG:no KEGG:EF0093 NR:ns ## KEGG: EF0093 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 736 1 736 1055 1303 97.0 0 MKKTMLILLFGLLTVVGLPMVTEAVEPVNATDTTIFGTQAMVPNSAEDQSDKLQTLLSQT AKEGNALFLPQGSYALSKDITISSNYQLIGDTTGATILHNATGTPIQLKDTTYGTKTNVR LQNIAFDGINVTLKLTNQLTLANNIFYNPLKGFVVNLNADIGVKISGNIFMRDKAHMQPK IDFNRAIYIGGYSTPSRFQYMSDVDIVDNLFGLKVTELDAIKSTSRSDLAATITRLQTAI EAGAISVPNEQNYLSTGVNSFNMLKDVTVQHNFFYSPYDNEDLNGLVGDHAIYFRGAQNI TVVGNHLRGLQNGPAGGFKFKSGRNITIMNNYLRNTGLIMYGTPEIGLAETQAEGAISEL SNWLVANNIFDWKYWDNQYAIGMEYNRHTGNNNVFNGVFINNQFVNYHNIPQNRRRELLI ASGGGFRPETSFVKDNTRDDGLKNGQLLVENWTEADYRLMPATWESLISPTLYEQYKNTP IPVRNTLATPVATTIVQEQSIDPQQLVANTNDADEAVPTAKIVNPEVLNEIGQQKVTVQL TYETGSLVTVNVPVTVEAPAKKLDLSQLQTVYASIGEANQYTVYSWQLFTAIGPKTIVPS YYQQATQLLAEGQVSGDKTQEQVDQLTSNLQSAMKVLVKKADITLERAEAENELASVHKL DESVYTTDSWQAMQEALIDTTTGERSSKQLQQLLAWSDEELLEPTLGGFKTPADAQKRIN QLTQTIKTALLLLVEKSTETTSNTSESSTSSTTSESSSTSESSTPSTTSESSSTSESNTP STTSETSNTSESSTPSTTSESSSTSESSTSSTTSETSSTSESSTPSTT >gi|284795441|gb|ADDQ01000108.1| GENE 2 2502 - 2741 361 79 aa, chain - ## HITS:1 COG:no KEGG:EF0092 NR:ns ## KEGG: EF0092 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 79 1 79 79 114 97.0 1e-24 MKKRMEQIEEILSCEENSAGVRLKELVEALELEVTNQNLLKVTSILHMNPKFKKIYAYED SRVITLYQLLQNKPLEVTE >gi|284795441|gb|ADDQ01000108.1| GENE 3 3086 - 4591 1319 501 aa, chain - ## HITS:1 COG:no KEGG:EF0091 NR:ns ## KEGG: EF0091 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 501 1 501 501 928 98.0 0 MKWDEYVDIFDTDVVSKIIILRNLPINEGWIDINELAEELQLNKKSVKKYVELLKDDITY YAVDNDASLAFEKGHGYRLNLASSQAFQKLYTAIFRDSLTYQVMEDLFWGRFNGIVPATA KYHTSDATIRRLLKGFTEILAPLGLVINKSTWKIEGNEAYLRHFAYTIFMDLIRDTWPFD YIQETEVAQTVQKMMAFFNVEVAETVTRRVKYMVAISKVRSAQGAEYRPSAEQETYLEGN KHYQAFIEEMTATTLFLNKNDLTFVYFFLLANDQFYQDEATAQAILAHFDESEAPVYMLT HLVQHFLLEEIHMTPQLEKIRPQIFYYLFATHLFAELYYVQNVKMYNVFWNKVKEKYPVL LEELSQGLNQLYEQTGNELFTNKEFLALRYSSVLALSDDLIHREQKIVLGLKSGLPVLEE ERVKLSIENNFRRFYALEVLRYSEASKEEWQNIDLLLVTSLADVETGHPEIFLLSSELTF EQYNRLNQKIVKINEKRTTSL >gi|284795441|gb|ADDQ01000108.1| GENE 4 4673 - 5584 1066 303 aa, chain - ## HITS:1 COG:SPy1158 KEGG:ns NR:ns ## COG: SPy1158 COG1597 # Protein_GI_number: 15675134 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Streptococcus pyogenes M1 GAS # 1 295 1 300 303 191 33.0 2e-48 MKKMMVLYNETSGSSESKEIAERFKKAAEAKGEAVILQPSNPDIDPEEMRKNAKENQVGV LVVIGGDGTIHHAVQNFKDTIRDYQIGIIPGGTVNNFARVLSIPLKEEDALETILAGQTT PVDFGMVNQDVMISTLTIGLLADTAANVTQQEKQKYGPLAFTKQFFRLLMKKKKYKLKID GDERRWHGKAQLLTMTMTNSAGGFTNFDANATPDDGEVHIIILPKLVFYKFVYYLPKIIR GQLNEIPGVVYFSGSQFKISGEKDKKVQTRTDGDPTDDLPIKVTVEAGGLNVFVPETSTS TKE >gi|284795441|gb|ADDQ01000108.1| GENE 5 5861 - 11959 6326 2032 aa, chain - ## HITS:1 COG:L148778 KEGG:ns NR:ns ## COG: L148778 COG4932 # Protein_GI_number: 15672133 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Lactococcus lactis # 164 2031 154 1982 1983 1162 38.0 0 MRKNGPMVNRWLYGLMCLLLVLNYGTPLMALAEDVNSDGQLTLGEVKQTSQQEMTLALQG KAQPVTQEVVVHYSANVSIKAAHWAAPNNTRKIQVDDQKKQIQIELNQQALADTLVLTLN PTATEDVTFSYGQQQRALTLNTGTDPTESTAITSSPAASANEGSTEEASTNSSVSRSSEE TVASTTKAIESKTTESTTVKPRVAGPTDISDYFTGDETTIIDNFEDPIYLNPDGTPATPP YKEDVTIHWNFNWSIPEDVREQMKAGDYFEFQLPGNLKPNKPGSGDLVDAEGNVYGTYTI SEDGTVRFTFNERITSESDIHGDFSLDTHLNDSDGRGPGDWVIDIPTQEDLPPVVIPIVP DTEQQIDKQGHFDRTPNPSAITWTVDINQAMKDQTNPTVTETWPTGNTFKSVKVYELVMN LDGAIKEVGRELSPDEYTVDKNGNVTIKGDTNKAYRLEYQTTIDEAVIPDGGGDVPFKNH ATLTSDNNPNGLDAEATVTATYGKILDKRNIDYDEANQEFTWEINYNYGEQTIPKDQAVI TDTMGDNLTFEPDSLHLYSVTFDDKGNEVVGAELVEGKDYKVVINGDGSFAIDFLHDVNG AVKIDYKTKVDGIVEGDVAVNNRVDVGTGQHSEGDGTASQQNIIKNTGAVDYQNSTIGWT LAVNQNNYLMENAVITDTYEPVPGLTMVPNSLVVKDTTTGAQLTLGKDFMVEITRNAEGE TGFKLSFMGAYAKTSDAFYVTYNTFFDVTELDANNPALDHYRNTAAIDWMDEAGNNHHSE DNKPFKPLPAFDLNAQKSGVYNAVTKEITWTIAVNLSNNRLVDAFLTDPILANQTYLAGS LKVYEGNTKPDGSVEKVKPTQPLTDITMEEPSEKNQNTWRVDFPNDSRTYVIEFKTSVDE KVIEGSASYDNTASYTNQGSSRDVTGKVSIQHGGESVKKGGEYHKDDPDHVYWHVMINGA QSVLDDVVITDTPSPNQVLDPKSLVIYGTNVTEDGTITPDKSVILEEGKDYTLEVTTDNE TGQQKIVVKMAHIEAPYYMEYRSLVTSSAAGSTDTVSNQVSITGNGSEVVHGDDNGDVVV DIDHSGGHATGTKGKIQLKKTAMDGTTILAGAHFQIWDQAKTQVLREGTVDATEVITFGG LPQGQYILVETKAPEGYTVSDELAKGRVITIDEETSAEGAQPTIIKNDVNKVILEKTDEK GKKLVNARFKLEHAVTTPFTHWEEVPLAPDRTNANGQLEVDSLKPGLYQFTEIEAPTGYL LDTTPKRFIVTQNTSGQIRDVHVKMLNYQGSAELIKKDQAGNPLAGAEFSVLNATGQVVR EHLVSDADGKVTVTDLAPGKYQFVETKAPAGYLLNTEPSAFTIAASDRGKPATVIATANF VNYQGAAKLIKKDVNGHLLSGATFKVLDAKGQTIQTGLTTNNQGEIVAEHLAPGKYRFVE TKAPTGYLLNTTPVPFEIAEKNAGKPAVVVASDNFVNYKGAFQIVKTNSADQPLAGAVFE LYDHNKQSLGITATSGKDGKIIFRDLAPGTYYYKEIKAPKLPDGADYIIYPELVKVEIRG DFKGDPEIFQLGAFANFKGRAVFKKIDANANPLPGTIFKLYRIENGEKIFEREVTAEKDG SLAMEDLGAGSYELDEMDATDGYIVNKQPIYFVVKKNSNDKQPLDELEFVNYQAEVTGRK VNEQGQALAGAVFAIYNADEQNQPQGSPITFLNRAGEKVSEITTDKTGEIYAKGLNEGHY VLVETKAPTGYLLDTTPHPFDVTAQLGKEQPIALGDLINYQGTAQLTKENETGEALAGAV FKVIDETGQTVAGQTNLMSDKQGKVIAKNLAPGTYRFVETQAPTGYLLNETPSASFTIAK DNQGKPATVVLKAPFINYQGAAKLVKIDQQKNALAGAEFKVTDAETGKTVARSLRSDNQG LVQVNHLQPGKYTFVETKAPDGYQLSKQAVAFTIAATAKDKPELVDAGTFVNEKQPVSKK TKPNQPTTKQAARETGWLVLPKTNTQVNYFFVFIGLLLIGLASWLFYKKSKK >gi|284795441|gb|ADDQ01000108.1| GENE 6 12670 - 14157 1001 495 aa, chain + ## HITS:1 COG:no KEGG:EF0086 NR:ns ## KEGG: EF0086 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 495 1 495 495 915 99.0 0 MYNLLTKQEIQLLSLIEYLYDSKEKVPMQVLRRKYEFSHYNINNLLNQLTLLISRVNTHE NVHIRIINNQQSIELVADENIPIELMKEAVVRGSLTYMLALDLLLKRYTSAKDFCEEHFI NFSIFKQVSDRLNNHLARFNCYLNLKRREKICGNEKDFRSFFYSLFFISGTSLVPFLSKT NQAQLQNFIEIIKNRYPYFTYTDLRKLKLIMSIGLLRYQSGFTITNYPEVAAINLAFPYS EFQLLVNDCFIDEQKEPDTWQAEIHFYYDFFSTLTMYSLVQMETINFANLAIMGMDNSPH ATWIFEKCTQLQLDLSAIEVVFLLVNLSNASERLIHFPVEEELSYEVANVSLYEKQYPNV SRTTNYFLKRLPFDKQHPLDALFRETIFLIIRSVLLNKQIPVKILLHSSINQIQENWLAK EINNYCDVPLKFVNHIQEVPDLVITDKNNPLFHASKTFYWHPVPYLDEYYNLKQVVRKIY FAKLRGENSLEGIGC >gi|284795441|gb|ADDQ01000108.1| GENE 7 14151 - 15635 1109 494 aa, chain + ## HITS:1 COG:no KEGG:EF0085 NR:ns ## KEGG: EF0085 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 360 1 360 367 613 99.0 1e-174 MLTGLLDVPYRKSFALLEELLERREAEEQTLAISTLATQLKMQQTTILQSVALLQTEIEK NGWENLFSLSANAKEITFWFAPYFQLSFLMPYFVKKSFAYQVLTYAFNHNAIDSKHFEKV LEISSSTFTRKIGQLNQWLQKYQIEINLKRTNVLVGKEKDIRIFFMMLFWNNYSEGDWPL HTITKKEVHSLFRRLKHSVSFNTTQDFTKDLIFSAVILARWKEGFFIKETFVEEEAIVNP FVNLSEFELFFKEEALHQVPTKFIQKEGLFAFFLLTISVSYATQEVLEIPAARMHMVQLL GSPIKEIIYQLTSFYQIKLTFHEYLYLYTSIQNLSVFFKTFVTIANPFVQESFLKEALQK NPSLYKDVKRLTIEMLPTLMGNEKLLVDCLFILFCTLKTKSLPPIRVLVRTNQSNLILDT LYEKLSKAVDKKLIFVASPEKPFDVIITDIFSEVSVKSTIPTYYVDFSASIGELAQSLEN LNTQIVTKQSPRHF Prediction of potential genes in microbial genomes Time: Sun May 15 13:19:49 2011 Seq name: gi|284795440|gb|ADDQ01000109.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont227.1, whole genome shotgun sequence Length of sequence - 6189 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 4, operones - 3 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 675 - 728 13.0 1 1 Op 1 . - CDS 779 - 1381 481 ## COG2184 Protein involved in cell division - Prom 1451 - 1510 5.9 2 1 Op 2 . - CDS 1628 - 2566 360 ## gi|227518272|ref|ZP_03948321.1| hypothetical protein HMPREF0348_1255 - Prom 2609 - 2668 6.2 3 2 Op 1 . - CDS 2678 - 3019 307 ## COG2337 Growth inhibitor 4 2 Op 2 . - CDS 3019 - 3249 272 ## gi|227518274|ref|ZP_03948323.1| antitoxin MazE - Prom 3294 - 3353 6.9 + Prom 3258 - 3317 10.3 5 3 Op 1 . + CDS 3479 - 4084 566 ## COG2184 Protein involved in cell division 6 3 Op 2 . + CDS 4100 - 4672 391 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs + Term 4917 - 4949 2.0 - Term 4859 - 4909 -0.9 7 4 Tu 1 . - CDS 5105 - 6064 421 ## COG2826 Transposase and inactivated derivatives, IS30 family - Prom 6101 - 6160 6.5 Predicted protein(s) >gi|284795440|gb|ADDQ01000109.1| GENE 1 779 - 1381 481 200 aa, chain - ## HITS:1 COG:NMA0004 KEGG:ns NR:ns ## COG: NMA0004 COG2184 # Protein_GI_number: 15793038 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Protein involved in cell division # Organism: Neisseria meningitidis Z2491 # 14 192 11 188 191 216 59.0 2e-56 MLENKLGIINQLELNRIEERVSKEKAKQLYDSGDIDRVEIGTFKGLSYIHNYLFEDIYEF AGKVRSQNISKGNFRFAPVMYLEVALEHIDKMPQRNLDEIVAKYVEMNIAHPFREGNGRA TRIWLDLILKKELKQVVDWNLINKEDYLSAMERNPVNDLEIKYLISNSLTNRINDREIFM KGIDISYYYEGYTEYNIEDL >gi|284795440|gb|ADDQ01000109.1| GENE 2 1628 - 2566 360 312 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227518272|ref|ZP_03948321.1| ## NR: gi|227518272|ref|ZP_03948321.1| hypothetical protein HMPREF0348_1255 [Enterococcus faecalis TX0104] # 1 312 1 312 312 554 100.0 1e-156 MNLRKIEHEIEEILSKDTHSWVRLYELIREVEYSKLWRNEYSSFTQWIKHLAYVTGVTES LIWKRKKAGEIYFDYQQRARSRGFSVPNIEDVEVSPDNFELVEKISQGNSQIKDELMQQV LVKDIKRSDLVNTWSTIKTIQAKEGGGIVKKNRYSKIDSSDEQIFTISDFSFALSESSWL QIAKNSYHKGKSVYRLIPNFSFYSSLLMRSVTLDFLLLENVSSKYTQELNTHSIEIVFSD NKLNNIILNTKTNYSWVVVPEDISLIALKQLPKEIGLLKISSKRIIQVVRNAALTNETSK LDILQAFIVKTI >gi|284795440|gb|ADDQ01000109.1| GENE 3 2678 - 3019 307 113 aa, chain - ## HITS:1 COG:DR0417 KEGG:ns NR:ns ## COG: DR0417 COG2337 # Protein_GI_number: 15805444 # Func_class: T Signal transduction mechanisms # Function: Growth inhibitor # Organism: Deinococcus radiodurans # 7 105 5 103 117 77 36.0 7e-15 MSDEKKYIPKKGDIVWIDFDPSAGKEIQKRRPGLVVSRYEFNRKTMFAVICPITSTIKNM PTRYTLPDEMETHGQVVISQLKSLDFTERKLSQIEHLPLKDMAKIDQIIEYIF >gi|284795440|gb|ADDQ01000109.1| GENE 4 3019 - 3249 272 76 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227518274|ref|ZP_03948323.1| ## NR: gi|227518274|ref|ZP_03948323.1| antitoxin MazE [Enterococcus faecalis TX0104] # 1 76 1 76 76 140 100.0 2e-32 MLTTKSRKQGSSVVLTLPSNNGQKPKADQEYIVMYSDDGTITLVPKLQDPFSGGSEGEYY EKDEWYDIEPGGRELF >gi|284795440|gb|ADDQ01000109.1| GENE 5 3479 - 4084 566 201 aa, chain + ## HITS:1 COG:NMA0004 KEGG:ns NR:ns ## COG: NMA0004 COG2184 # Protein_GI_number: 15793038 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Protein involved in cell division # Organism: Neisseria meningitidis Z2491 # 1 195 1 190 191 219 56.0 2e-57 MILENKLGLTNQVELAKVEEKLSKQKAKELYDCGKINEIEVGTFKGLSEIHEFLFSDIYD FAGKIRSVNIAKGNFRFAPVMYLEHSLQHIDQMPQTSFEEIIKKYVEMNIAHPFREGNGR STRIWLDLILKEELQKVVDWNLIDKADYLSAMERSPINDLEIRYLISNALTDKIDDRELY MKGIDVSYFYEGYSEYTIDDL >gi|284795440|gb|ADDQ01000109.1| GENE 6 4100 - 4672 391 190 aa, chain + ## HITS:1 COG:pinQ KEGG:ns NR:ns ## COG: pinQ COG1961 # Protein_GI_number: 16129504 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Escherichia coli K12 # 4 188 5 192 196 99 34.0 3e-21 MTKYGYARVSTASQSTKEQIQQLLENGVEKKNIFSEKFTGTKRDRPKFNQLLAGLKPGDE IVVTKLDRFARNTREALEIIEPLLDDNVTIKVLNLGTIENTSMGRMVTRTLLSVAEMERD MIVERTQEGKMFARKNNPNFREGRPKATITPKKRHAYELLTSGKSYKEVEAITGFSRSTL FRIKKKIEES >gi|284795440|gb|ADDQ01000109.1| GENE 7 5105 - 6064 421 319 aa, chain - ## HITS:1 COG:BH2524 KEGG:ns NR:ns ## COG: BH2524 COG2826 # Protein_GI_number: 15615087 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS30 family # Organism: Bacillus halodurans # 1 306 1 306 314 121 31.0 2e-27 MTYTHLTTDELVMIESYYHQNIKIVKIAEYLKRSRTPIYNVINFLKEGHTALEYYQQYKE NKKRCGRRNIVLPKKQQSYIKEKIAQGWTPDVIIGRKEKPISCSVRTLYRQFKEKVFDES TLPMKGKRKPNGHQERRGKQAFKRNIVERETDYPTFKEEFGHIEGDTIVGIHHKSAVITL VERLSKIIITLKPEGRKAIDIENTLNHWFGSIPRHLFKSITFDCGKEFSNWKALSNQHDI AIYFADPGTPSQRALNENSNGLLRKDGLPKNMDFNQVDQAFISSVANKRNNIPRKSLDYQ TPLEVFMSYMNEDILSSLI Prediction of potential genes in microbial genomes Time: Sun May 15 13:20:16 2011 Seq name: gi|284795439|gb|ADDQ01000110.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont249.1, whole genome shotgun sequence Length of sequence - 37139 bp Number of predicted genes - 42, with homology - 38 Number of transcription units - 21, operones - 12 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 80 - 352 218 ## EF0612 hypothetical protein 2 1 Op 2 . - CDS 411 - 578 142 ## gi|293384929|ref|ZP_06630764.1| conserved hypothetical protein - Prom 605 - 664 4.2 3 2 Op 1 . - CDS 767 - 925 74 ## gi|293384930|ref|ZP_06630765.1| conserved hypothetical protein 4 2 Op 2 . - CDS 936 - 1034 118 ## - Prom 1071 - 1130 5.7 - Term 1044 - 1102 2.7 5 3 Op 1 . - CDS 1150 - 2130 1044 ## COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog 6 3 Op 2 . - CDS 2143 - 3021 677 ## EF0617 hypothetical protein 7 3 Op 3 . - CDS 3037 - 3837 568 ## COG1378 Predicted transcriptional regulators - Prom 3967 - 4026 12.3 - Term 4000 - 4046 3.3 8 4 Tu 1 . - CDS 4114 - 4263 139 ## - Prom 4290 - 4349 7.0 + Prom 4738 - 4797 2.0 9 5 Op 1 . + CDS 4824 - 4994 162 ## EF0621 hypothetical protein + Term 4995 - 5021 0.3 10 5 Op 2 . + CDS 5053 - 5217 131 ## EF0622 hypothetical protein 11 5 Op 3 . + CDS 5150 - 5410 159 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 12 5 Op 4 . + CDS 5456 - 6001 292 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 13 5 Op 5 . + CDS 6015 - 6641 392 ## EF2268 hypothetical protein 14 5 Op 6 . + CDS 6712 - 7194 87 ## EF0625 hypothetical protein 15 5 Op 7 . + CDS 7191 - 7319 66 ## EF0628 PTS system, IIA component, putative + Term 7527 - 7566 -1.0 + Prom 8602 - 8661 9.9 16 6 Op 1 . + CDS 8731 - 8892 150 ## gi|293384942|ref|ZP_06630777.1| conserved hypothetical protein 17 6 Op 2 . + CDS 8885 - 9901 175 ## gi|256959759|ref|ZP_05563930.1| predicted protein 18 6 Op 3 . + CDS 9927 - 11816 972 ## gi|257415197|ref|ZP_05592191.1| predicted protein 19 6 Op 4 . + CDS 11841 - 12506 282 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 20 6 Op 5 . + CDS 12560 - 12646 205 ## + Term 12659 - 12709 3.0 + Prom 14265 - 14324 9.8 21 7 Op 1 2/0.667 + CDS 14572 - 16122 653 ## COG4564 Signal transduction histidine kinase 22 7 Op 2 . + CDS 16103 - 16711 338 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain + Term 16778 - 16822 -0.8 + Prom 17065 - 17124 4.5 23 8 Op 1 . + CDS 17175 - 18014 1091 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase 24 8 Op 2 . + CDS 18037 - 18519 673 ## EF0630 glyoxalase family protein + Term 18554 - 18598 9.1 + Prom 18603 - 18662 5.1 25 9 Tu 1 . + CDS 18685 - 20127 1227 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes + Term 20145 - 20185 7.1 + Prom 20742 - 20801 6.1 26 10 Tu 1 . + CDS 20825 - 22081 601 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 + Term 22184 - 22229 13.2 + Prom 22216 - 22275 9.2 27 11 Op 1 7/0.000 + CDS 22380 - 24242 2199 ## COG0076 Glutamate decarboxylase and related PLP-dependent proteins + Term 24271 - 24312 0.1 + Prom 24359 - 24418 3.4 28 11 Op 2 . + CDS 24445 - 25863 1525 ## COG0531 Amino acid transporters + Term 25926 - 25974 9.3 + Prom 25866 - 25925 3.3 29 12 Tu 1 . + CDS 25988 - 27394 1558 ## COG1757 Na+/H+ antiporter + Term 27424 - 27475 9.1 + Prom 27481 - 27540 4.9 30 13 Tu 1 . + CDS 27750 - 28667 1105 ## EF0637 hypothetical protein + Term 28669 - 28735 25.0 31 14 Op 1 . - CDS 28637 - 28699 65 ## 32 14 Op 2 . - CDS 28719 - 29168 543 ## COG4808 Uncharacterized protein conserved in bacteria - Prom 29228 - 29287 7.7 - Term 29269 - 29313 7.0 33 15 Op 1 . - CDS 29318 - 29824 769 ## COG1267 Phosphatidylglycerophosphatase A and related proteins - Prom 29889 - 29948 3.6 34 15 Op 2 . - CDS 29956 - 30909 1287 ## COG0039 Malate/lactate dehydrogenases - Prom 30999 - 31058 6.6 + Prom 30990 - 31049 7.5 35 16 Op 1 . + CDS 31077 - 31439 241 ## EF0642 hypothetical protein 36 16 Op 2 . + CDS 31455 - 31865 338 ## EF0643 hypothetical protein + Term 31870 - 31920 11.1 - Term 31857 - 31907 11.1 37 17 Tu 1 . - CDS 31912 - 32739 720 ## COG0583 Transcriptional regulator - Prom 32812 - 32871 7.4 + Prom 32772 - 32831 7.6 38 18 Op 1 . + CDS 32881 - 33849 810 ## COG1275 Tellurite resistance protein and related permeases 39 18 Op 2 . + CDS 33871 - 34830 754 ## COG0451 Nucleoside-diphosphate-sugar epimerases + Term 34838 - 34873 4.0 - Term 34782 - 34825 2.4 40 19 Tu 1 . - CDS 34844 - 35191 276 ## COG1733 Predicted transcriptional regulators - Prom 35252 - 35311 4.5 + Prom 35061 - 35120 5.8 41 20 Tu 1 . + CDS 35303 - 35920 943 ## COG0778 Nitroreductase + Term 35960 - 36013 2.4 + Prom 36028 - 36087 2.3 42 21 Tu 1 . + CDS 36107 - 37120 1123 ## COG0095 Lipoate-protein ligase A Predicted protein(s) >gi|284795439|gb|ADDQ01000110.1| GENE 1 80 - 352 218 90 aa, chain - ## HITS:1 COG:no KEGG:EF0612 NR:ns ## KEGG: EF0612 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 19 59 5 45 91 71 85.0 1e-11 MWDRVALPRPVTQTFAIWFGISFFGGIFRIFPFVMEHTITRQIFCPWLFAFLMTRKQFQS LSSHISSHIFHHTHISWLAEKGYPLKAIMD >gi|284795439|gb|ADDQ01000110.1| GENE 2 411 - 578 142 55 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293384929|ref|ZP_06630764.1| ## NR: gi|293384929|ref|ZP_06630764.1| conserved hypothetical protein [Enterococcus faecalis R712] # 1 55 27 81 81 99 98.0 5e-20 MIMLAMLDGAAYIAFERKASKAIPLILVLAVAVWLVGDTSDVFNWILDRMRSWGR >gi|284795439|gb|ADDQ01000110.1| GENE 3 767 - 925 74 52 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293384930|ref|ZP_06630765.1| ## NR: gi|293384930|ref|ZP_06630765.1| conserved hypothetical protein [Enterococcus faecalis R712] # 1 52 26 77 77 91 98.0 2e-17 MIEGTYDKKSGKYFYDFYSMKLDPKTKKSKQHRIYCTHVPVKVMYRRVRNYL >gi|284795439|gb|ADDQ01000110.1| GENE 4 936 - 1034 118 32 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFMTVSDHLKVLGFVPLSSRGKYQLYLLDLPP >gi|284795439|gb|ADDQ01000110.1| GENE 5 1150 - 2130 1044 326 aa, chain - ## HITS:1 COG:MA3252 KEGG:ns NR:ns ## COG: MA3252 COG2423 # Protein_GI_number: 20092068 # Func_class: E Amino acid transport and metabolism # Function: Predicted ornithine cyclodeaminase, mu-crystallin homolog # Organism: Methanosarcina acetivorans str.C2A # 1 325 3 323 326 184 35.0 2e-46 MLFLKKEDIIKSFSMREAIDADKKALSLYSAGKASVPLRTNIDVPKSNGQSLYMPAYVEG GEGALGVKIVSVYPENIKKNLPSVPATMIVLDPETGMVSACLDGTYLTQLRTGAVQGAAT ELLAKEDAKIGALIGTGGQAQSQLEAMLTVRKLEEVRIFDIDFERASQFAEEMMQQFSVT MRPTKTNQECVEGADIITSVTTSKRATFSAEWVKKGAHINGVGAYTPEMCEIPREIIKAA DIVIFDTMDGVLKEAGDFISPLQDGYIQRDSYHGELGQLINEELVGRTSGEQITIFKTVG SAVLDVVVATEIVKKAKENNLGKLIY >gi|284795439|gb|ADDQ01000110.1| GENE 6 2143 - 3021 677 292 aa, chain - ## HITS:1 COG:no KEGG:EF0617 NR:ns ## KEGG: EF0617 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 292 1 292 292 491 99.0 1e-138 MIRNILLALIVAINLYFIIYFLRDLFKNKQNFKEEPGDMRLLPFTSFITFFLSTFGVSDF AIGTVLYPKLKWVSMKKLPGTLNTQCVVPVAVMALSYITAINVGIKTLAVCIICQIIGAY LGPRFVVKLPEKTIKLFVGIGLVIAAFLIFMGQMNWIPSNGTASELYGGKLILAGFLLFV YGALNNIGIGSYALTMVTVYLLGLNPVAAFPIMMGACTFSVPIGSVQFIKFDEYSRKITL FTSTFGVLGVLVAVFLVKSLDTYILKWIVILVLLYSAYTMLSSQLKKATATN >gi|284795439|gb|ADDQ01000110.1| GENE 7 3037 - 3837 568 266 aa, chain - ## HITS:1 COG:BS_yrhO KEGG:ns NR:ns ## COG: BS_yrhO COG1378 # Protein_GI_number: 16079765 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 2 266 3 263 275 102 24.0 1e-21 METIIQIMKKYDFSEMETRVYTTLLEKGNLTGYEVSKISGVPRSKVYNILEKLLKKNLIV VNKSEPKLYHAISANEFLEKLEKSVKNDLSFLTKNLGMIKEKDEEDMLWKVDGIEYVLDK AEHLVKNAKESLLIQVWHENLTDSLLKALQQAEKRVDKFVLILFSSTHEYDLPLEKYYIH GFETDKLADFGARWINIVADEQEVVFGTINEELQSTDVTWTKNHAMVNLAKEYVKHDAYT LKVIAESSEELKAKYGEDFEGIRKIY >gi|284795439|gb|ADDQ01000110.1| GENE 8 4114 - 4263 139 49 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKKGIPYCPKPRNTFERGLFKYFEGKKGQDLKEENQKKKSKKKSEYVF >gi|284795439|gb|ADDQ01000110.1| GENE 9 4824 - 4994 162 56 aa, chain + ## HITS:1 COG:no KEGG:EF0621 NR:ns ## KEGG: EF0621 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 56 1 56 56 84 91.0 1e-15 MPIPNQFIDYPLARIKDSIVRKQINPALYPNKLYGNRSWDTFYRYDNQLVYESSYY >gi|284795439|gb|ADDQ01000110.1| GENE 10 5053 - 5217 131 54 aa, chain + ## HITS:1 COG:no KEGG:EF0622 NR:ns ## KEGG: EF0622 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 54 1 54 54 88 96.0 6e-17 MKTITLYEILGEEGSDKYISVFKSLIVSNFTENEDILSRCQLFIHNNASAEENL >gi|284795439|gb|ADDQ01000110.1| GENE 11 5150 - 5410 159 86 aa, chain + ## HITS:1 COG:SP0325 KEGG:ns NR:ns ## COG: SP0325 COG3716 # Protein_GI_number: 15900257 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Streptococcus pneumoniae TIGR4 # 5 86 31 112 272 94 54.0 3e-20 MKTFYQGVSYLYTIMPALKKIYKDEPEKLKETASANLEFYNTNPQMLPFITSMQLAMYDN DQSVSDTRSIKMALMGPLSGIGDSIA >gi|284795439|gb|ADDQ01000110.1| GENE 12 5456 - 6001 292 181 aa, chain + ## HITS:1 COG:SP0325 KEGG:ns NR:ns ## COG: SP0325 COG3716 # Protein_GI_number: 15900257 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Streptococcus pneumoniae TIGR4 # 2 129 130 259 272 111 45.0 9e-25 MDGLGFAPMGFWLSMLISMLVIKLLMGYLGFKLGTSVIETLSDKIGKISSAANIVGVTVI AALATSFVKANIAIKYSHNVESGEKQVIAIQDILDKITPKMLPVILTILVFYLIKKRKWN TYQLLIFFICDWDSSLCLRDFSIVSERSKGQGFRFRVNLVSLFISFLSDGHNIFSVNGNK I >gi|284795439|gb|ADDQ01000110.1| GENE 13 6015 - 6641 392 208 aa, chain + ## HITS:1 COG:no KEGG:EF2268 NR:ns ## KEGG: EF2268 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 204 1 204 642 351 82.0 9e-96 MNLQKIENYQLKFYQQDWLSGYLEKHSKLLEPLFERTYFLLKDQIIYNDAMDMEACSIPY SLKEYTWNRYPGDDPEWLFMLSRQSFLLDLSQAYALTKEKCYLQKWRSLLLDFIQEEGEP NSTNRNVWRPLDVGIRVMNWLKSLTYISIADYKQLGIDKVLRNALLVHLEYLERSYIDKY RLSNWGVLVTGGMAAMDLFLPELVNRVN >gi|284795439|gb|ADDQ01000110.1| GENE 14 6712 - 7194 87 160 aa, chain + ## HITS:1 COG:no KEGG:EF0625 NR:ns ## KEGG: EF0625 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 160 47 206 228 300 95.0 1e-80 MYQYEVLMTYVYLLQISEYLEISLPLDLRTKLKIPILSTYYIADNQDVLNPINDSDHVNF RYVYDSYRNMKKELGKHCSQRNFFRGESSGLMFYKTEDIYFTLFNGLYGSSHGHVSTGSF TLQLQSDDLISDSGCYSYVNKAEWLQPKECDSHNTMFIKD >gi|284795439|gb|ADDQ01000110.1| GENE 15 7191 - 7319 66 42 aa, chain + ## HITS:1 COG:no KEGG:EF0628 NR:ns ## KEGG: EF0628 # Name: not_defined # Def: PTS system, IIA component, putative # Organism: E.faecalis # Pathway: not_defined # 1 42 97 138 138 67 95.0 2e-10 MMMRNSGIEPFELAKSVVKVGKSNIVLFEKNNEAEELSEEGI >gi|284795439|gb|ADDQ01000110.1| GENE 16 8731 - 8892 150 53 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293384942|ref|ZP_06630777.1| ## NR: gi|293384942|ref|ZP_06630777.1| conserved hypothetical protein [Enterococcus faecalis R712] # 1 53 1 53 53 100 100.0 2e-20 MQNQVYLINSDQEQFKKENSSDVAVDKVPGRGTVVLTFMSARICNFDCTYCFA >gi|284795439|gb|ADDQ01000110.1| GENE 17 8885 - 9901 175 338 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256959759|ref|ZP_05563930.1| ## NR: gi|256959759|ref|ZP_05563930.1| predicted protein [Enterococcus faecalis Merz96] # 13 338 13 338 338 537 100.0 1e-151 MLKKEKIEEVKEFLHENSTISYEKMRTILSKHNLCTYPNTNSQSNIVFELNSRKLFEIPL FAIQKRIERVTKGIYYLNLLLIAVMLIGFPIIIIIKFPVQLIDSYISQINFSILNVTKVD IIVILFAGSGSLVFHELGHLLSSNYYNVGWKSLNIRLKWGFSPVIYIRYSDMYTIDSWKR VKILGFGMINNCILIFFSLCLFIITNNWCFGYIALLNIGYLFSSLLPLSTSDGYHIFTII YDCEGIRWQLLLLLSGILKKETSILKKFQNKKMIGLFLYFILSYVIGIAGIFSIIRITLN YLNVFGFSSTVLSIFVYVMAFISLIQVLLSFKKALKSF >gi|284795439|gb|ADDQ01000110.1| GENE 18 9927 - 11816 972 629 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|257415197|ref|ZP_05592191.1| ## NR: gi|257415197|ref|ZP_05592191.1| predicted protein [Enterococcus faecalis AR01/DG] # 1 629 7 635 635 1043 98.0 0 MWIYIRENFKKNSSKFLFIILIFFVTMLLLTFSLGVIYTINYRIENELADYLLKKDFKNM KLFLQLGTGVLVGFSLFIIYNTYSIVIQGRKKEFQLLYKLGMKYKKIQQILSIESFLLSS VTAVIGLFIGIVFSRVFLSNYQDMKVEHIPIYIYLLVIVSAILFFIWCGSKNLKSMNIEV ESKQKEGSTFKSQPTIKEKFLFRIKLALGIILLIVSIVSGYTTMKIILLFTGLVLIFDPL IAGTLASLRFLSLRFNRLSLFVAVEENCWNIKRISSLISTLAFSVMLLVGMLTFFHSVKE AVVQKVDETYRFEHILVMNELSEVKEEKVKAYLQNLYPHATFEIALSMEIEKENNENTLI LTGVSSNFKNIQVLEMEKEFNIKDFDLNNDSLNVLFPSQLAEKSKIKRNQVIDYSFDKDK SIKISPKDFYQPLDLQQVFTSKSALTEYLFGKDVKGIYNTIYLNRLSDEEIKEFTKYLSI ENYNLMNIGDLKDKYKNQAIKQTEMIEAFIYALIFFSGAIILNMFILSISSRQRIYKGLL IMGMKRKALLISMLIEMSIIYILGVVLGWLFGLTFAEGGIKMMEEVIVFEPVINIPYLQV CSILVVIYLILVLGIILISRVILKEKNRK >gi|284795439|gb|ADDQ01000110.1| GENE 19 11841 - 12506 282 221 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 220 1 218 245 113 30 2e-24 MIELKSVEKEYGINGHSQQVLNGITITLEKGNIYALVGPSGSGKSTLLNIIGGLIHPTKG EVKIGDKNITEFNSNQLAELRTNDIGFIFQDFNLIPFLNVKENILFSLRLKGEKIENHSD NYEQLVNWLGIKKIEEKYINEISGGEQQRTAIARCLLMEPKIILADEPTGNLDKKNTDAF LKLIRTLPFMENKVFIIVTHDESVERFCDQVFKLEEGQIIT >gi|284795439|gb|ADDQ01000110.1| GENE 20 12560 - 12646 205 28 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFLHDFDFEDLDSIEEVITPNKGSVTCC >gi|284795439|gb|ADDQ01000110.1| GENE 21 14572 - 16122 653 516 aa, chain + ## HITS:1 COG:VC1276 KEGG:ns NR:ns ## COG: VC1276 COG4564 # Protein_GI_number: 15641289 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Vibrio cholerae # 306 503 248 443 451 64 28.0 6e-10 MLMISSITVNYLTIIKEKKFFFSALKYKVLITSLLLSFVLLILFYFICLLSPELSFYNWD KITILVTILPTGVVYILVKGREIILSEKFLLVFCILLYSSFFFLILEVIGIVLWKSFILT ILFTLVCYLTHLSINAIRSNKVKQLKNNFRNLNNEKLEVLDQVTYSQFLNNVSELLLDKL EELTASQRLAVFVESKEGCYLLCQKGEAVFNSLKKEIHLLKKQKQKIKFRKKEYTCIPII ISGYTVWIFFENNDNDIDLKSIYKTVEQHGTLIITVRLLHLNSKSYVKDPIEVCQLLRIK LFNSMEIEKKNYANYLHDNILQSVIGLHTLISNLSGDVMVMDLINEEFSKLVSSIRSEIF NTYPSTLYHLTFKENLQILIDDFNKKYPNTEFTLDYSIEEIIPQHVIAPLYRIVKELNEN IGKHADAEIGKVTVEIDNAEIQLIVEDDGVGVGNILEFEKSLIQTNDHIGLLSIKNDINW LNGSFKMLSLPGPNSGTKVWVTIPCMKGEQYENITS >gi|284795439|gb|ADDQ01000110.1| GENE 22 16103 - 16711 338 202 aa, chain + ## HITS:1 COG:SPy1908 KEGG:ns NR:ns ## COG: SPy1908 COG2197 # Protein_GI_number: 15675720 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Streptococcus pyogenes M1 GAS # 1 195 1 196 201 88 34.0 1e-17 MKILLVDDHKLIGKSLEMTLKNYADVKEFRYISDPITVFEMIETYRPSIILMDIHMGMFN GLELGEEVLRKTKTKLVFLSGFDLAEYRDKAIGIGANGFLDKHIAVDSLIENLKKISYED KKIFPQTSRHDLKHNLITPREKEVLRILSQGVKQSAIASKMNITDRTLRNYVYSINEKLE TNSAIASVVKAIELGIINVRLQ >gi|284795439|gb|ADDQ01000110.1| GENE 23 17175 - 18014 1091 279 aa, chain + ## HITS:1 COG:L132617 KEGG:ns NR:ns ## COG: L132617 COG0656 # Protein_GI_number: 15672315 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Lactococcus lactis # 11 279 3 272 272 348 67.0 5e-96 MITSLADTVTLNNGTKIPGMGLGVFQIPDEETAKVVEEGIINGYRLIDTAQIYGNESGTG AGIKAGLAATGLNREDLFVTSKVWNAHISYDETIQAFNDSLERLGLDYLDLYLIHWPGNN SYKESWQALETLYAEGKVKAIGVSNFQVHHLEDLLSYAKVVPVINQVELHPKLDQKEVRD FCEKHDIKVQAWSPLMQGQLLSNETILAIAENHNKSAAQVILRWDIQQDILLAVKSVHKE RMISNAAVFDFELSADEMAQINQLNESLRVGPDPDTFDF >gi|284795439|gb|ADDQ01000110.1| GENE 24 18037 - 18519 673 160 aa, chain + ## HITS:1 COG:no KEGG:EF0630 NR:ns ## KEGG: EF0630 # Name: not_defined # Def: glyoxalase family protein # Organism: E.faecalis # Pathway: not_defined # 1 160 1 160 160 312 99.0 2e-84 MSEAVKGFSVVNHVGITVSNLDESVKFYEALTGTKIANRDEIGGKRMAQTQGLDDTLIKY ANVHLENINIDLLEYVKPKSEKASYSNEQISAMHMCFEVEDIDAAVARLRAIGVEPDGEP ITFQEEDGLKSGFGTGVAYFTDPDGTNLELIAPKGPFTRN >gi|284795439|gb|ADDQ01000110.1| GENE 25 18685 - 20127 1227 480 aa, chain + ## HITS:1 COG:lin2646 KEGG:ns NR:ns ## COG: lin2646 COG1502 # Protein_GI_number: 16801708 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Listeria innocua # 13 480 15 482 482 456 47.0 1e-128 MILSVLTVIYFINAIIAGITILLKPRDVAAIWAWLLVLIALPVFGFFLYLFFGRGLTDKK FYLQQSDLRELENFQNFQEESFELYSQKMPTEEQQQFTDFFSSLNRMPLTKKNDVEIFTD GTEKFNALMADIKKAQHSIHIEYYAFVTDHIGTKILNLLEEKAAEGVEVRLLYDAFGSKG TKVHHLNELKKNGGFVQTFITSQKALLKFRLNYHDHRKIVVIDGKVGYIGGFNVADQYAG TTKKFGYWRDTHLRIQGPAASLLQMRFLMDWNVSSPEKNRVAYQLDYFFKLEALVPEANT SIQMIASGPNSDREQIKLAFIKLITSAKKRVWIQTPYLVPDDSVLAALKVAAASGVDVKI MIPDKPDHPFIYRATQYYGRLLMKENIEILIYNGGFLHAKTMIMDDEVCTVGSANQDIRS YKLNFEANAVLYDKKIIDQLEAIFLEDRKKCTTMTPEVVRDMSKWLIFKQQISRLFSPIL >gi|284795439|gb|ADDQ01000110.1| GENE 26 20825 - 22081 601 418 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 10 392 16 394 418 236 36 2e-61 MNIIDELAWRDAINQQTNEEGLRELTENTSISLYCGVDPTGDSMHIGHLIPFMMMKRFQL AGHHPYILIGGGTGTIGDPSGRTTERVLQTMEAVQHNVDSLSNQMKKLFGKDAEVTMVNN YDWLSELSLLDFLRDYGKNFNVNTMLAKDIVASRLESGISFTEFTYQILQSIDFYTLHKK HNIQLQIGGADQWGNITAGLDLIRKKEGPEAKVFGLTIPLMLKADGTKFGKTAGGAIWLD PKKTSPFEFYQFWLNQDDRDVIKYLKFFTFLDKEEIDALAEKVEKEPGKREAQRRLAEEV TRFVHDDAALEEAQKISEALFSGNIKDLTIEEIEQGLEHVPTVEITKDAKNIVDWLVDTE IEPSKRQAREDVSGGAISINGDRVTDLDFAVDPTQHFDGKFVVVRKGKKNYFLAKVMD >gi|284795439|gb|ADDQ01000110.1| GENE 27 22380 - 24242 2199 620 aa, chain + ## HITS:1 COG:VC1149 KEGG:ns NR:ns ## COG: VC1149 COG0076 # Protein_GI_number: 15641162 # Func_class: E Amino acid transport and metabolism # Function: Glutamate decarboxylase and related PLP-dependent proteins # Organism: Vibrio cholerae # 84 510 87 442 548 120 27.0 1e-26 MKNEKLAKGEMNLNALFIGDKAENGQLYKDLLIDLVDEHLGWRQNYMPQDMPVISSQERT SESYEKTVNHMKDVLNEISSRMRTHSVPWHTAGRYWGHMNSETLMPSLLAYNFAMLWNGN NVAYESSPATSQMEEEVGHEFAHLMSYKNGWGHIVADGSLANLEGLWYARNIKSLPFAMK EVKPELVAGKSDWELLNMPTKEIMDLLESAEDEIDEIKAHSARSGKHLQAIGKWLVPQTK HYSWLKAADIIGIGLDQVIPVPVDHNYRMDINELEKIVRGLAEEQIPVLGVVGVVGSTEE GAVDSIDKIIALRDELMKDGIYYYVHVDAAYGGYGRAIFLDEDNNFIPYEDLQDVHEEYG VFKEKKEHISREVYDAYKAIELAESVTIDPHKMGYIPYSAGGIVIQDIRMRDVISYFATY VFEKGADIPALLGAYILEGSKAGATAASVWAAHHVLPLNVAGYGKLIGASIEGSHHFYNF LNDLTFKVGDKEIEVHTLTHPDFNMVDYVFKEKGNDDLVAMNKLNHDVYDYASYVKGNIY NNEFITSHTDFAIPDYGNSPLKFVNSLGFSDEEWNRAGKVTVLRAAVMTPYMNDKEEFDV YAPKIQAALQEKLEQIYDVK >gi|284795439|gb|ADDQ01000110.1| GENE 28 24445 - 25863 1525 472 aa, chain + ## HITS:1 COG:BMEII0909 KEGG:ns NR:ns ## COG: BMEII0909 COG0531 # Protein_GI_number: 17989254 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Brucella melitensis # 5 464 20 484 510 175 26.0 2e-43 MDKQQVKKIELGTFIGLTMALCATVRSIPTLAAVGWTLISYTIFAVLFFAGPIALISGEL STMLPQEGGPQLWVKTALGSKWGFVVAWLLWVQMFPGMVMVASTLGPLLGNTFGNVHLGE NHWFVLGCILVIYWIITILNLKFDMAKVGGNIGVWLGVYIPVLVMFVLGLLSMIKVGLTP GGYLGAFSWSKVLPNLENMDTFKYLAGIAFIFVGIEMSSVYIPRLKDATKNYTKGVFISL IGLVLLNVINAMFVANIVPNGKMELSNITQPILLYCDVLGLPTIIGNIFSFMVFLGVLLQ LSAWVTGPSKTIIQVARDGLLPPKFGFHRENKYGVSRNVVLTQSVVISLFALLYGVMDDV NAVFLTLTNATTIIYSIVYVLIAISLIKLRKSQPDTLRPYRIGKKGNGLAYLVAAMLIFS VIIVIFATLGTTTVTDAVLVALITIVMFVIPLIINRFKKASWATEVKEDLGE >gi|284795439|gb|ADDQ01000110.1| GENE 29 25988 - 27394 1558 468 aa, chain + ## HITS:1 COG:NMA0715 KEGG:ns NR:ns ## COG: NMA0715 COG1757 # Protein_GI_number: 15793692 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Neisseria meningitidis Z2491 # 11 448 13 450 459 308 40.0 1e-83 MKSTKPTVSFAESLGILIALLAILGYLIIGQKLTPHIPILFVFMLLLLYGKWKGFSWDEI HEGIVEGIKPGIIPIIIFLLIGVLVATWILSGTIPTIMVYGFKIISVKFFLPTVFVVCAL VGVTVGSSFTTVSTMGIAFLGIGHILGFDNAMTAGAVVSGAFLGNNISPLSDTTNLAAGI GGVNLFEHILNMMYTVIPAFIISIVGYIFLGHQSGSADLQSVDAMVQTLHQGFWISPITL LPVAVLFLFAWKKVPAIPTLLVGSTVAVILAFINDHHLSLAKVSTILMSGYVADTGDQSI DTLLSRGGIESMLGSAALIILALGLGGLLIKFNIVATLIDKIKGYVNNPAKLIALTALSS VGINLLVGEQYLSIILPGETFKSSFTRLGIDKKYLTRTLADAGAAVNSLIPWGVSGTFIM GTLKVGVLEYLPYAFFPLLCPIITVILGIFLKKQQGENKKAPGTNVEL >gi|284795439|gb|ADDQ01000110.1| GENE 30 27750 - 28667 1105 305 aa, chain + ## HITS:1 COG:no KEGG:EF0637 NR:ns ## KEGG: EF0637 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 305 1 305 305 447 99.0 1e-124 MKKIGLISSAFLLTLALAACGGGKSTENTDSRSSAAESTTVESTKASATKESSSKAATKS SDAKPSGTTTADSKATASSTKEAANNGSAEKQSPAKNANPDDQANQVLNQLANMFPGQGL PQAILTSQTNNFLTAATTSQADQNNFRVLYYAEKEAIPVNDARVNQLTPISSFEKKTYGS DAEAKNAVNQIIDNGGQPVDLGYNIIGYKQGAAGSSYLSWQEGNWSLVVRASNINGESPD DLAKNVVNILEQETLPAPNTVGQITLNVAGTTDYNRNSVVWQAGTVVYSVHHFDPIQAVK MATSM >gi|284795439|gb|ADDQ01000110.1| GENE 31 28637 - 28699 65 20 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGIVARFLFINYIDVAIFTA >gi|284795439|gb|ADDQ01000110.1| GENE 32 28719 - 29168 543 149 aa, chain - ## HITS:1 COG:STM2156 KEGG:ns NR:ns ## COG: STM2156 COG4808 # Protein_GI_number: 16765485 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 3 149 6 152 152 106 43.0 2e-23 MKKFLHVFLIFIGVFFLASCGSKIETKTFVGSPQDGIDSTLTYTYQGDKVLTQTAKNIVS YDKLGITKEEAKTALEPVSKQYEDIKGLDYKLTYEDKQAIEKLTINYEKLDYDKAKKVDG IQIDGDSSKGISMKKSQELVESQGYTEQK >gi|284795439|gb|ADDQ01000110.1| GENE 33 29318 - 29824 769 168 aa, chain - ## HITS:1 COG:lin2497 KEGG:ns NR:ns ## COG: lin2497 COG1267 # Protein_GI_number: 16801559 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylglycerophosphatase A and related proteins # Organism: Listeria innocua # 1 162 1 162 166 196 67.0 1e-50 MVIQGDTLENSARRLLQERGVTMNDLAELVLFLQKDYIDNLTLDTCLESVDAVLTKREVH NAIITGVQLDILAEENKLLSPLQEILTEDEGLYGIDEIMALSIVNVYGSIGFTNYGYIDK VKPGILKELNAHDGEHVHTFLDDIVGAIAAAAASRLAHSQPDLSDITK >gi|284795439|gb|ADDQ01000110.1| GENE 34 29956 - 30909 1287 317 aa, chain - ## HITS:1 COG:L0018 KEGG:ns NR:ns ## COG: L0018 COG0039 # Protein_GI_number: 15672358 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Lactococcus lactis # 1 314 1 314 314 450 71.0 1e-126 MKVFNKKVAIIGTGFVGTSIAYSMINQGIANELILVDIDKAKSEGEAIDLLDGVSWGQEN VNVWAGDYQDCQDADIVVITAGANQKPGQSRLDLVSINAEIMKTIVNNIMKSGFDGILVI ASNPVDVLTYVAWQASGLPVSRVIGTGTTLDTTRFRKELSQRLAIDPRNVHGYIIGEHGD SEVAVWSHTMIGTKPILEIVDTTERLTSDDLPIISDKVKNTAYEIIDRKQATYYGIGMST ARIVKAILNNEQAILPVSAYLDGQYGQQDVFTGIPAVVGNQGVTDIIELNLNAAEKELFQ KSVTQLKQVMASLQPNA >gi|284795439|gb|ADDQ01000110.1| GENE 35 31077 - 31439 241 120 aa, chain + ## HITS:1 COG:no KEGG:EF0642 NR:ns ## KEGG: EF0642 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 120 1 120 120 216 100.0 3e-55 MTTTTVYYASNNEKQPNRFQLVIGSCSYELPKIEIYEILECVASAYGYQKEPFIEEQTEC FVKGNRCIHVSQQATTLTFVVNDLRLVMEKQCRNHEEVFQEVNHILLNIFEETPCVFLEK >gi|284795439|gb|ADDQ01000110.1| GENE 36 31455 - 31865 338 136 aa, chain + ## HITS:1 COG:no KEGG:EF0643 NR:ns ## KEGG: EF0643 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 136 1 136 136 207 98.0 1e-52 MKQVKITTTSDLINGGCNACPNVKCTNYLVHVEDETIALETLTVADLVTLLALKEGFRQK LVMEMFEEYTMFERETHQVVFKEEETRILFQSKKQTIQSTLLCKEPQQVFQETQQILHQL FELEPFEFELVEETDK >gi|284795439|gb|ADDQ01000110.1| GENE 37 31912 - 32739 720 275 aa, chain - ## HITS:1 COG:L0220 KEGG:ns NR:ns ## COG: L0220 COG0583 # Protein_GI_number: 15672356 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 241 1 242 272 153 35.0 3e-37 MFEWIKTFIAVYETKNFSAAAKQLYISQPTVSLQIKKLEQHFSIKLFYRNGKQSVIPTKE ADFLYPKMLSIIESLTTSFAQAAEKENFKEDCIIASSNTVAIYLLPDIMESLVTAFPLIN FSIQLMNSNEVVDMVQNNHAHIGLIEKPIETKNLHKEIVYEDQLVLAGDAASKFWLLREK NSGLRFFNELYLNEHSINLPIIELNNNEVLLQLLKNNIGQSIVSRLSISDEIPWQPIDQS FASRKIFIVQTDHHANTSFSEVYNRIVEKIRERQT >gi|284795439|gb|ADDQ01000110.1| GENE 38 32881 - 33849 810 322 aa, chain + ## HITS:1 COG:L181867 KEGG:ns NR:ns ## COG: L181867 COG1275 # Protein_GI_number: 15672360 # Func_class: P Inorganic ion transport and metabolism # Function: Tellurite resistance protein and related permeases # Organism: Lactococcus lactis # 8 309 9 307 324 250 53.0 2e-66 MVESAKKFLRKVPIPICGLILGMVSLGNLLYSLGYATIGTIYCVLGSLLMILVILKIIFT MKHALSTLDDPIIASVSPTFTMALMVICVFLDRIFTNAAWINVLWIGAVILHFILMIYFV AVHIFPTKIELEHIYPSWFITFVGIGVIPNTSQLFINELGKIVFWVALFFYLLLLPILIK RITKSKEMPESTIPLLTIMTAPGSLCLAGYISMGGHLYMPLVVFLLILSQCIYGIVVVNL YKIMQVTFYPSYAAFTFPLVISATALVKVKPLFAEKVGLTSLLNILSTFELLLAVAIVSY VFIRYCIFLFQRENNTKKVELN >gi|284795439|gb|ADDQ01000110.1| GENE 39 33871 - 34830 754 319 aa, chain + ## HITS:1 COG:L12335 KEGG:ns NR:ns ## COG: L12335 COG0451 # Protein_GI_number: 15672193 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Lactococcus lactis # 4 312 7 310 313 327 54.0 3e-89 MKKLLITGGAGFIGSNLANFYSQQYQVFVIDDLSMGQVSNLQQNEQLVFIKGSVTDQQLL DEVLSKHSFEYIFHLAAVASVASSVAQPLETHEVNFLSVLKILESIKKYQKKLKRFVFAS SAAVYGAEPTLPKRETSVICPLSPYAIDKFAAERYVLNEYHLHGVPTSAVRFFNVYGPNQ NPASPYSGVLSILMDRYIQLEQGQASQFQIFGDGQQTRDFIYIEDVLTALDLVATKSEAL GHVYNVGTEVAISLNQLIEEMNQLVGLSLPVSYQKERDGDIKYSLSDSSALKGLGFSPVY SIQEGLQKYLKFTHNTQNR >gi|284795439|gb|ADDQ01000110.1| GENE 40 34844 - 35191 276 115 aa, chain - ## HITS:1 COG:alr2106 KEGG:ns NR:ns ## COG: alr2106 COG1733 # Protein_GI_number: 17229598 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Nostoc sp. PCC 7120 # 5 103 9 103 110 97 47.0 5e-21 MSQGETMTTDKQTSINLALSTINGKWKLSLMDELFQGTKRNGELMRALDGITQRVLTDRL REMEKDGLVHRESFNELPPRVEYTLTPEGYALYDALSSLCHWGETFAQKKARLNK >gi|284795439|gb|ADDQ01000110.1| GENE 41 35303 - 35920 943 205 aa, chain + ## HITS:1 COG:BS_yodC KEGG:ns NR:ns ## COG: BS_yodC COG0778 # Protein_GI_number: 16079013 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Bacillus subtilis # 5 204 6 202 202 129 37.0 3e-30 MMYQDVVRSRRSVRDFMPDVEIPKEELMAIIEEAMFAPNSTNLNSWRFLIVTEKEQKEAL YEVSMQQPAVKGAAAVIILLGDLTAYTVANADEISAKAVAQGTMTEEIRQGINENVSWYY DVSEEQKREWLMLDQGLVAMQLMLSAKDRGYDTVAMSGFETEAVRKLFNIEDHLVNGLII PIGKAQTPGFETVRRDVSEVVTWLD >gi|284795439|gb|ADDQ01000110.1| GENE 42 36107 - 37120 1123 337 aa, chain + ## HITS:1 COG:lin0931 KEGG:ns NR:ns ## COG: lin0931 COG0095 # Protein_GI_number: 16800002 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Listeria innocua # 9 335 10 330 331 304 47.0 2e-82 MRYVIMQSRDIRENLATEDYLLNTLSFEEPLVLFYIQEPCVILGRNQNAYEEIDLAYARE KGIVITRRLSGGGAVYDDLGNVSFSFVVQEGHQAFGDFKAFTKPIIEALHKMGATGAEIS GRNDLLIDGKKFSGNAMYTKKGKMYTHGTLMYDVDLAEVQRVLTVSKKKIESKGTKSVRG RVTNLRPYLDEKYQQLTIEEFRNRLLMELFDVESLTEIAEKEYALTKADQQEIRKLVAEV YGNEAWVFGEAPKFTIKKEEKFKGGIVDARLTVEKGKIIELTIYGDYFAKKETTEIVAAL LGVDYQYSSIWQALAAFNFEDYFVNITKEEFVHLLVD Prediction of potential genes in microbial genomes Time: Sun May 15 13:22:15 2011 Seq name: gi|284795438|gb|ADDQ01000111.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont249.2, whole genome shotgun sequence Length of sequence - 101997 bp Number of predicted genes - 99, with homology - 96 Number of transcription units - 60, operones - 26 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 63 - 911 895 ## Bfae_02570 Zn-dependent protease with chaperone function - Prom 969 - 1028 5.0 2 2 Tu 1 . - CDS 1100 - 1426 441 ## EF0652 hypothetical protein - Prom 1453 - 1512 7.4 + Prom 1417 - 1476 10.0 3 3 Op 1 . + CDS 1557 - 1835 201 ## EF0653 hypothetical protein 4 3 Op 2 . + CDS 1840 - 2775 985 ## COG1609 Transcriptional regulators + Prom 2812 - 2871 5.5 5 4 Op 1 . + CDS 2946 - 3542 789 ## COG3560 Predicted oxidoreductase related to nitroreductase 6 4 Op 2 . + CDS 3585 - 4430 1233 ## COG2514 Predicted ring-cleavage extradiol dioxygenase + Term 4444 - 4485 4.3 + Prom 4467 - 4526 6.9 7 5 Op 1 . + CDS 4562 - 5323 846 ## COG1349 Transcriptional regulators of sugar metabolism 8 5 Op 2 . + CDS 5336 - 6736 1419 ## EF0658 hypothetical protein 9 5 Op 3 . + CDS 6823 - 7473 646 ## COG1573 Uracil-DNA glycosylase + Prom 7476 - 7535 4.1 10 6 Tu 1 . + CDS 7648 - 8988 1105 ## COG0534 Na+-driven multidrug efflux pump + Term 9079 - 9122 -0.2 - Term 8960 - 9004 9.1 11 7 Tu 1 . - CDS 9013 - 10839 2081 ## COG1164 Oligoendopeptidase F - Prom 10979 - 11038 8.7 12 8 Tu 1 . + CDS 10967 - 11476 391 ## EF0662 hypothetical protein + Term 11481 - 11539 10.7 + Prom 11516 - 11575 2.6 13 9 Op 1 . + CDS 11607 - 12335 994 ## COG0217 Uncharacterized conserved protein + Term 12343 - 12369 0.3 14 9 Op 2 . + CDS 12388 - 12858 457 ## EF0664 hypothetical protein + Term 12873 - 12922 15.5 - Term 12851 - 12919 25.2 15 10 Op 1 . - CDS 12934 - 13107 293 ## EF0665 hypothetical protein - Prom 13134 - 13193 6.6 - Term 13176 - 13218 10.1 16 10 Op 2 . - CDS 13220 - 14194 850 ## COG0346 Lactoylglutathione lyase and related lyases + Prom 14115 - 14174 4.8 17 11 Tu 1 . + CDS 14225 - 14797 672 ## COG0400 Predicted esterase + Term 14802 - 14850 10.6 - Term 14790 - 14838 6.4 18 12 Tu 1 . - CDS 14863 - 16389 1782 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase - Prom 16428 - 16487 6.7 + Prom 16505 - 16564 5.8 19 13 Tu 1 . + CDS 16593 - 18242 1568 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid + Term 18286 - 18334 6.4 + Prom 18264 - 18323 3.3 20 14 Tu 1 . + CDS 18351 - 19085 864 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases + Prom 19129 - 19188 6.4 21 15 Tu 1 . + CDS 19219 - 20634 1934 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases + Term 20636 - 20690 10.5 + Prom 20668 - 20727 5.4 22 16 Tu 1 . + CDS 20779 - 21012 409 ## EF0672 hypothetical protein + Term 21127 - 21180 12.5 23 17 Tu 1 . - CDS 21176 - 22195 780 ## COG3594 Fucose 4-O-acetylase and related acetyltransferases - Prom 22424 - 22483 7.5 + Prom 22167 - 22226 3.6 24 18 Op 1 12/0.000 + CDS 22432 - 23385 917 ## COG1125 ABC-type proline/glycine betaine transport systems, ATPase components 25 18 Op 2 . + CDS 23386 - 24903 1564 ## COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) + Term 24907 - 24978 14.2 + Prom 24962 - 25021 6.4 26 19 Op 1 . + CDS 25045 - 25500 716 ## COG1438 Arginine repressor 27 19 Op 2 . + CDS 25534 - 27042 1615 ## COG1109 Phosphomannomutase 28 19 Op 3 . + CDS 27066 - 27620 462 ## PROTEIN SUPPORTED gi|116334854|ref|YP_796381.1| acetyltransferase + Term 27703 - 27754 17.0 - Term 27689 - 27740 17.0 29 20 Tu 1 . - CDS 27746 - 28609 540 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit - Prom 28723 - 28782 6.4 + Prom 28713 - 28772 8.7 30 21 Op 1 . + CDS 28952 - 31138 2257 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) 31 21 Op 2 . + CDS 31201 - 31542 568 ## COG3679 Uncharacterized conserved protein + Term 31546 - 31596 18.1 - Term 31525 - 31589 24.8 32 22 Op 1 . - CDS 31611 - 32069 370 ## gi|227517644|ref|ZP_03947693.1| hypothetical protein HMPREF0348_0627 33 22 Op 2 . - CDS 32085 - 33647 963 ## COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain - Prom 33834 - 33893 7.3 + Prom 33586 - 33645 10.2 34 23 Tu 1 . + CDS 33832 - 33921 278 ## + Prom 33979 - 34038 5.1 35 24 Op 1 . + CDS 34077 - 35309 634 ## COG0535 Predicted Fe-S oxidoreductases 36 24 Op 2 . + CDS 35302 - 35574 297 ## gi|227517647|ref|ZP_03947696.1| hypothetical protein HMPREF0348_0630 37 24 Op 3 . + CDS 35601 - 36071 163 ## gi|256959818|ref|ZP_05563989.1| predicted protein + Term 36225 - 36262 0.7 + Prom 36232 - 36291 7.8 38 25 Op 1 5/0.067 + CDS 36345 - 37580 1297 ## COG0420 DNA repair exonuclease 39 25 Op 2 3/0.133 + CDS 37577 - 40288 2897 ## COG4717 Uncharacterized conserved protein 40 25 Op 3 . + CDS 40285 - 41229 983 ## COG3481 Predicted HD-superfamily hydrolase + Term 41235 - 41272 6.2 - Term 41224 - 41258 4.5 41 26 Tu 1 . - CDS 41269 - 42297 1214 ## COG0760 Parvulin-like peptidyl-prolyl isomerase - Prom 42334 - 42393 8.4 42 27 Op 1 . - CDS 42461 - 42805 286 ## EF0686 hypothetical protein 43 27 Op 2 . - CDS 42806 - 43231 429 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases - Prom 43333 - 43392 5.7 + Prom 43361 - 43420 5.3 44 28 Op 1 7/0.000 + CDS 43447 - 44184 262 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 45 28 Op 2 1/0.333 + CDS 44186 - 45397 1030 ## COG4473 Predicted ABC-type exoprotein transport system, permease component + Prom 45419 - 45478 5.1 46 29 Op 1 5/0.067 + CDS 45526 - 46305 758 ## COG0510 Predicted choline kinase involved in LPS biosynthesis 47 29 Op 2 . + CDS 46378 - 47022 1016 ## COG0220 Predicted S-adenosylmethionine-dependent methyltransferase + Term 47026 - 47072 12.2 - Term 47013 - 47060 6.1 48 30 Tu 1 . - CDS 47082 - 47828 529 ## COG1737 Transcriptional regulators - Prom 47881 - 47940 11.7 + Prom 47888 - 47947 6.4 49 31 Op 1 19/0.000 + CDS 48006 - 48932 939 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 50 31 Op 2 7/0.000 + CDS 48937 - 50355 1837 ## COG1299 Phosphotransferase system, fructose-specific IIC component 51 31 Op 3 . + CDS 50382 - 50843 610 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 52 31 Op 4 . + CDS 50840 - 51817 1108 ## COG3684 Tagatose-1,6-bisphosphate aldolase + Prom 51819 - 51878 5.0 53 31 Op 5 . + CDS 52006 - 52539 390 ## COG3557 Uncharacterized domain/protein associated with RNAses G and E + Term 52563 - 52617 20.1 - Term 52549 - 52603 20.1 54 32 Tu 1 . - CDS 52627 - 53058 465 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 53088 - 53147 6.3 + Prom 53110 - 53169 6.5 55 33 Op 1 1/0.333 + CDS 53203 - 54348 1368 ## COG0628 Predicted permease + Prom 54444 - 54503 3.9 56 33 Op 2 . + CDS 54523 - 55902 1639 ## COG1253 Hemolysins and related proteins containing CBS domains + Term 55909 - 55957 10.2 + Prom 55978 - 56037 6.3 57 34 Tu 1 . + CDS 56076 - 57650 1880 ## COG4108 Peptide chain release factor RF-3 + Term 57693 - 57747 16.1 + Prom 57721 - 57780 7.2 58 35 Op 1 . + CDS 57826 - 58269 435 ## EF0702 hypothetical protein 59 35 Op 2 . + CDS 58285 - 58932 700 ## COG2323 Predicted membrane protein + Prom 58938 - 58997 5.0 60 36 Tu 1 . + CDS 59038 - 60069 1020 ## EF0704 putative lipoprotein + Term 60071 - 60126 13.2 - Term 60067 - 60104 6.3 61 37 Tu 1 . - CDS 60110 - 60424 434 ## EF0705 hypothetical protein - Prom 60528 - 60587 11.1 - Term 60570 - 60611 4.2 62 38 Tu 1 . - CDS 60619 - 62859 1678 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 - Prom 62909 - 62968 2.0 63 39 Tu 1 . - CDS 62985 - 63161 125 ## EF0707 hypothetical protein + Prom 62974 - 63033 6.2 64 40 Tu 1 . + CDS 63161 - 63352 384 ## EF0708 hypothetical protein + Prom 63436 - 63495 5.7 65 41 Op 1 25/0.000 + CDS 63523 - 63789 397 ## COG1925 Phosphotransferase system, HPr-related proteins 66 41 Op 2 . + CDS 63789 - 65516 2241 ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) + Term 65529 - 65572 11.0 - Term 65521 - 65556 6.7 67 42 Tu 1 . - CDS 65561 - 66595 1054 ## EF0711 hypothetical protein - Prom 66615 - 66674 3.3 - Term 66619 - 66661 10.5 68 43 Op 1 . - CDS 66676 - 67413 684 ## EF0713 hypothetical protein 69 43 Op 2 . - CDS 67468 - 69753 1455 ## EF0714 hypothetical protein + Prom 70028 - 70087 3.7 70 44 Tu 1 . + CDS 70107 - 71390 2001 ## COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) + Term 71432 - 71474 9.2 + Prom 71424 - 71483 6.1 71 45 Tu 1 . + CDS 71503 - 72165 556 ## EF0716 hypothetical protein + Term 72166 - 72215 14.2 - Term 72155 - 72204 10.8 72 46 Op 1 19/0.000 - CDS 72212 - 74134 2319 ## COG1299 Phosphotransferase system, fructose-specific IIC component 73 46 Op 2 10/0.000 - CDS 74158 - 75075 956 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 74 46 Op 3 . - CDS 75072 - 75824 731 ## COG1349 Transcriptional regulators of sugar metabolism - Prom 75895 - 75954 10.3 - Term 75918 - 75961 12.6 75 47 Tu 1 . - CDS 75963 - 77522 1579 ## COG0038 Chloride channel protein EriC - Prom 77599 - 77658 7.2 + Prom 77600 - 77659 6.3 76 48 Tu 1 5/0.067 + CDS 77687 - 79945 2683 ## COG0210 Superfamily I DNA and RNA helicases + Prom 79980 - 80039 7.7 77 49 Op 1 . + CDS 80071 - 82101 2300 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) + Prom 82103 - 82162 6.8 78 49 Op 2 . + CDS 82255 - 82365 164 ## + Term 82452 - 82490 5.0 + Prom 82441 - 82500 3.9 79 50 Op 1 31/0.000 + CDS 82683 - 82988 425 ## COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit 80 50 Op 2 21/0.000 + CDS 82988 - 84457 399 ## PROTEIN SUPPORTED gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 81 50 Op 3 2/0.200 + CDS 84457 - 85887 1727 ## COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) 82 50 Op 4 2/0.200 + CDS 85906 - 86994 1229 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase + Term 87004 - 87063 13.9 + Prom 87110 - 87169 5.6 83 51 Op 1 . + CDS 87194 - 88567 1665 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 84 51 Op 2 . + CDS 88568 - 88696 219 ## PROTEIN SUPPORTED gi|227517695|ref|ZP_03947744.1| 30S ribosomal protein S9 + Term 88714 - 88757 12.0 + Prom 88737 - 88796 5.0 85 52 Tu 1 . + CDS 88836 - 89153 404 ## EF0730 hypothetical protein + Term 89154 - 89205 3.7 - Term 89149 - 89186 3.1 86 53 Tu 1 . - CDS 89194 - 90159 570 ## COG2771 DNA-binding HTH domain-containing proteins - Prom 90191 - 90250 6.6 + Prom 90140 - 90199 11.8 87 54 Op 1 3/0.133 + CDS 90438 - 91457 1183 ## COG0078 Ornithine carbamoyltransferase + Term 91466 - 91510 7.6 88 54 Op 2 . + CDS 91524 - 92900 1299 ## COG0531 Amino acid transporters 89 54 Op 3 . + CDS 92893 - 93810 688 ## COG2957 Peptidylarginine deiminase and related enzymes 90 54 Op 4 1/0.333 + CDS 93768 - 93992 295 ## COG2957 Peptidylarginine deiminase and related enzymes 91 54 Op 5 . + CDS 94004 - 94933 1179 ## COG0549 Carbamate kinase + Term 94998 - 95054 12.3 + Prom 95049 - 95108 6.5 92 55 Tu 1 . + CDS 95130 - 96716 1830 ## COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases + Term 96763 - 96816 14.2 - Term 96751 - 96804 6.6 93 56 Tu 1 . - CDS 96909 - 97025 120 ## - Prom 97119 - 97178 12.0 + Prom 97115 - 97174 11.3 94 57 Op 1 . + CDS 97273 - 97971 654 ## COG3201 Nicotinamide mononucleotide transporter 95 57 Op 2 . + CDS 97980 - 98624 878 ## COG1428 Deoxynucleoside kinases + Term 98632 - 98665 4.0 96 58 Op 1 . + CDS 98974 - 99405 222 ## EF0741 hypothetical protein + Prom 99426 - 99485 5.4 97 58 Op 2 . + CDS 99518 - 99904 616 ## COG4835 Uncharacterized protein conserved in bacteria + Term 99908 - 99965 19.5 - Term 99902 - 99947 14.3 98 59 Tu 1 . - CDS 99951 - 100286 483 ## EF0743 hypothetical protein - Prom 100315 - 100374 8.7 + Prom 100305 - 100364 3.8 99 60 Tu 1 . + CDS 100584 - 101975 1877 ## COG1823 Predicted Na+/dicarboxylate symporter Predicted protein(s) >gi|284795438|gb|ADDQ01000111.1| GENE 1 63 - 911 895 282 aa, chain - ## HITS:1 COG:no KEGG:Bfae_02570 NR:ns ## KEGG: Bfae_02570 # Name: not_defined # Def: Zn-dependent protease with chaperone function # Organism: B.faecium # Pathway: not_defined # 16 274 53 326 441 134 30.0 5e-30 MCQPQEKKKEISVAKLRYRFELPMIIIGFVLLFFALGLVALLILSDLPIPDWLLIVLIAP IAPVIAFFTIRYMYMDTASNGVEITENQLPEIYSLYIDLAKEMGFGTKKLRMPRLYLING NGVLNAFAAKCSLHRRYVVIHSDLLDIAYNTGDFSLIRFILAHELGHHKCGHTNLWRLML SIILKPVALDKSFTRTQEYTADRAGLYYAEEGALSMIYLFSGKYMGNRVDLEEYFHSIDL HDDTIWLKLSNFLSDHPVGFRRMQTLKKAKDTGNWDVHGKFF >gi|284795438|gb|ADDQ01000111.1| GENE 2 1100 - 1426 441 108 aa, chain - ## HITS:1 COG:no KEGG:EF0652 NR:ns ## KEGG: EF0652 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 108 1 108 108 172 99.0 4e-42 MEIVTVATKSDLLTNLNKQTDEIIISGALAQEIYHLKKQQLTETEEMGFLVGSQGAGSFL TYLIEKLSYINSALSPEEQKIEHAILRLYVIKKLTPETTLLRLKQLDY >gi|284795438|gb|ADDQ01000111.1| GENE 3 1557 - 1835 201 92 aa, chain + ## HITS:1 COG:no KEGG:EF0653 NR:ns ## KEGG: EF0653 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 92 1 92 92 170 100.0 1e-41 MNVIVEISDRLGMDYYFVSVTTTAKSLQLNSPKKYYKIWHQEIPYHQITEWHLTQQEDIQ EISFAWQETFYRFVDYGTGIVPYLTQFCKVMR >gi|284795438|gb|ADDQ01000111.1| GENE 4 1840 - 2775 985 311 aa, chain + ## HITS:1 COG:lin2880 KEGG:ns NR:ns ## COG: lin2880 COG1609 # Protein_GI_number: 16801940 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 305 1 316 318 248 40.0 1e-65 MTTIREIARLSGSSVTTVSRVINHHPYVSEEKRLKIQAIIDELGYKPNILARNLSFGKSN TLGVMVPYTNQPYFDAILSGIIHQAFQQGMMVSLLPTDYDKEVEKSYLEKMATGAFDGMI VLSKANPLSVFAPYKEQVVFCEKIEDPSYASIYIDRLTVYRRVFQALKQQGCSEVAITIN RAPEKSTSARYLVDAYQEIYGAIPENRLFKDCLTYEDGCEVGRHCGQDPTLQAVVTNGDE IAAGIQAVIERPLFLVGQEQTLLSEILNFSTICHPLMELGEKATHLFQEKRPKTIQLTST FINRQPDFSFS >gi|284795438|gb|ADDQ01000111.1| GENE 5 2946 - 3542 789 198 aa, chain + ## HITS:1 COG:BMEII0772 KEGG:ns NR:ns ## COG: BMEII0772 COG3560 # Protein_GI_number: 17989117 # Func_class: R General function prediction only # Function: Predicted oxidoreductase related to nitroreductase # Organism: Brucella melitensis # 6 197 7 198 199 231 56.0 8e-61 MSKFTEMMKNRRSIYALGENLPISKEEVTALVKEVVRESPTAFNSQTQRVVFLFGDAHKK LWAMTEDALKPLTPAEAFPNTQAKLQGFAAGAGTILFFEDTDIVKNLQDSFPLYADNFPV WSEQATGLTQANVWTALAQENIGANLQHYNPVIDEAVAAEWSIPANWNLRAQMVIGSIEA PAGEKEYMEDSARFKEFN >gi|284795438|gb|ADDQ01000111.1| GENE 6 3585 - 4430 1233 281 aa, chain + ## HITS:1 COG:lin0649 KEGG:ns NR:ns ## COG: lin0649 COG2514 # Protein_GI_number: 16799724 # Func_class: R General function prediction only # Function: Predicted ring-cleavage extradiol dioxygenase # Organism: Listeria innocua # 13 279 12 278 279 186 41.0 3e-47 MVQALPSNIGIQQVTLKVADLDKMVNFYTKTIGLKLLKQGEGRAWLAPQGTNDAILVLKE LTAGEENQGTTGLYHIAFLLPTRKDLGNMLLWLLQENVQIGAADHGYSEALYLSDPENNG IEIYWDKPEEVWDIRPNGEIIGVTEELDGDSLAAEADGHWLGISEGSKIGHIHLKVADLD TTETFYKNLGFGLKSNFGQQAKFFAAGQYHHHIGTNTWSGKQLPTIQENQFGLENYTFRL PTAADLEIVQANAEEAKLHFIAKDHLLALEDPSGMIIQFTY >gi|284795438|gb|ADDQ01000111.1| GENE 7 4562 - 5323 846 253 aa, chain + ## HITS:1 COG:L0153 KEGG:ns NR:ns ## COG: L0153 COG1349 # Protein_GI_number: 15673279 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Lactococcus lactis # 1 253 1 253 253 241 51.0 7e-64 MLIEERLAKIQKIVNEQKSISMEALAEQVSVSKDTIRRDLIRLEKEGHLKRTHGGAISAQ SEATIYDYAQRIMKHPEKKQAIAQKVWANIPKQASIFFDSSTTVEAAIRAMENSPIHAIT NSLSHALLLAQMDQTKITVLPGQLHKQQLFLFGAETVAKVGEFAPDYTLLGVFALSEQGL FIHTEEEGQVKRRMIQQGKQVIALADQTKLNKTGLFKICELTEIDCLVTDTRPDEKFCEQ LAQAGVTLIVADE >gi|284795438|gb|ADDQ01000111.1| GENE 8 5336 - 6736 1419 466 aa, chain + ## HITS:1 COG:no KEGG:EF0658 NR:ns ## KEGG: EF0658 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 466 1 466 466 923 98.0 0 MKRKINYTHIAEPTVFENVFPTYLTNETMMARKQKVLQRMETEKFDQLVFYADKEHGSNF EYLTGFIPRFEEGLLVLNKDGAATLILGNENLKLCQHARISADLIHYPAFSLPNQPMAGE QKLSQIFETLLDETAQKIGIVGWKMFTTQQQEPATMFDVPHFIVEALKKALPKEARLLNG THLLIGAKGARTTNNANELAHYEYGANLASRSMLKALNAIEVGQRETDIGALLNDEGQTP TVVTIAATGQRFEYANMYPTAKEIQLDDALSLTTGYKGGLSSRTGFVIENEQQLPEAQRD YLERVAKPYFQAVVHWLETIRIGLLGREMYQAIEEQLPKEIYHWHLNPGHLVSDDEWMSS PIYPDSAIRLESGMLFQVDIIPSVPGYTGVSAEECVALADETLQKEIQQTYPDMWQRIAT RKAYLKETLKIDLPTEVLPMSNLVGYLRPFYLAKDKALCVEKPAPK >gi|284795438|gb|ADDQ01000111.1| GENE 9 6823 - 7473 646 216 aa, chain + ## HITS:1 COG:CAC0219 KEGG:ns NR:ns ## COG: CAC0219 COG1573 # Protein_GI_number: 15893511 # Func_class: L Replication, recombination and repair # Function: Uracil-DNA glycosylase # Organism: Clostridium acetobutylicum # 22 203 25 188 199 113 34.0 3e-25 MHYPEHLKQAVLAKAKDLPLEGFVEGQGPQQPKLMLIGEAPGKEEIKENVPFIGRSGQLL MEQLQQVGLSRETVYITSAVRSRPFSVKTKQIAKTGERVTKFPNRTPTKEEIKIFAPLLD WEIAVCQPELILTLGNIGLQRLLGPKPTITAVHGTVIQSPIQTFDEQSQNYHWTQKTYQI IPLFHPAAVFYNYRLKEVVKEDWQVVQKQLQLLKKV >gi|284795438|gb|ADDQ01000111.1| GENE 10 7648 - 8988 1105 446 aa, chain + ## HITS:1 COG:lin2192 KEGG:ns NR:ns ## COG: lin2192 COG0534 # Protein_GI_number: 16801257 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Listeria innocua # 1 441 5 443 443 176 27.0 7e-44 MEQTQQNHFTALFYKNVLLGILSMAAQSIFILADTFFIANGIGTEALAGLNIVLPLVNII NGLGWMFGVGGATLFSTTVAQKEIKKANQYFSLTIGLVFVIGSLFTLASLIFSDQIIRGL QGTGVLFGLAKEYYMIYLSCSLLFILNNCLITFLRNDHNPRLATIAFVSGGIVNIILDYV FIYQFGWGMAGAAIATVMSPLTSLILITLHKWSPQRVLRFEKFKVKFQDVREIMSIGFSS FLNEFSSAFVMFLFNIVLLNLVGHVAISAYAIVANLNIIVIAIFTGIGQGAQPLLSRYYG LGETKVLRKFVKLSFITYLVAGFLFFLISQVFTGQIIEVFNSEGNDQLAQIARTAIRLYA ISFLFTGLNFMGIYYFSAVRKPKMALMISSLRGFFLIVPVLFILVKLLGLTGVWLAMPVV EFVTFGLMLVGYLAYRNYLKKREAVT >gi|284795438|gb|ADDQ01000111.1| GENE 11 9013 - 10839 2081 608 aa, chain - ## HITS:1 COG:lin1528 KEGG:ns NR:ns ## COG: lin1528 COG1164 # Protein_GI_number: 16800596 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Listeria innocua # 9 607 5 601 602 577 49.0 1e-164 MKEGLDMTYSITWDLDSIFPNGSESKELSQRMTQLTEQTKEYHQLITEWTPESAQGKEQF AEILTLQGKISNGFSQCNSFLTALISANTNDTKAKILSGDLYNLLPAIQLAETIFTKKIT EISAEHWQDLLAEEPFKTMAFRLNELRRDGKKLLSEQEENIINTLSLDGLNAWSTHYDTI VASIVIPFEEKDGSVTELSAGQAFNRMMGDPDKEVRQRLFTAWEKAWSGKASILADTLNH LDGFRLSDYKLHGTTDYLENPLNYNRMSQETLTVMWETIQKNKQPFVDFLTRKAQLFGKE KMDWQDQDAPIILGDLEEKTYSFDQAAAFILENFRKFSPKMADFAQMAFEKSWIEAEDRP GKRPGGYCTELPETQESRIFMTFGNSINEVATLAHELGHAFHSSVMWDLPSLNREYAMNV AETASTFAELIVADATLKEAKSDVEKINLLDTKMQNAIAMFMNIHARFIFENNFYQARQK GLVAEEDITELMLAAQKESYKDSLGSYHPHFWASKLHFFIDDVPFYNFPYTFGYLFSMGI YAYANQQGSSFEDQYIALLRDTASMTSEELAKKHLNVDLTKPDFWQAGIDQVLKDVEQFM TLTENYVN >gi|284795438|gb|ADDQ01000111.1| GENE 12 10967 - 11476 391 169 aa, chain + ## HITS:1 COG:no KEGG:EF0662 NR:ns ## KEGG: EF0662 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 169 1 169 169 317 98.0 1e-85 MKNYLKDSNLYLVIAFVIMAILFFSSSQTYEQQSQVGLLDKLLSSHPFEEQLKNISFQYA GSEVSIQASGYSKFVEFFIRKGAHFGTYFLLGGSWFIGLVPRIKGLFLTAVVSWLAATGY AGLDEFHQMITGGRIPLFQDVMLDAMGALTAIVICLVVHGLKKNKKRRR >gi|284795438|gb|ADDQ01000111.1| GENE 13 11607 - 12335 994 242 aa, chain + ## HITS:1 COG:lin1570 KEGG:ns NR:ns ## COG: lin1570 COG0217 # Protein_GI_number: 16800638 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 240 1 239 241 298 62.0 7e-81 MSGHSKWSNIQGRKNAQDAKRGKIFQKVSREIYMAAKAGGPDPAMNPALRLAVDKAKSAN MPNDNIARAIKKASSAGEGEHYDEVTYEGYGPGGVAVLVHALTDNRNRTATNVRVAFTRN GGSLGETGSVNYMFDRKGYIVIKREDHAIEEDDMLEVVLEAGGEDLETSPEVFEIYTAPE DFTAVRDALEQAGYSLAQAELTMVPQTLLTLNDEQKAQLERLVDKLEDDDDVSEVFTSAE NL >gi|284795438|gb|ADDQ01000111.1| GENE 14 12388 - 12858 457 156 aa, chain + ## HITS:1 COG:no KEGG:EF0664 NR:ns ## KEGG: EF0664 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 156 1 156 156 295 100.0 2e-79 MEGILKKRICLQAIREEAEAYYRNGDFYCSEAIVATIRQHFDAEIPIEAVAMASGFPVGV GGAKCICGALSGGVMCLGYFFGRTEAKGEQVNKTMALANELHQSFRQKHRVVCCSILTSK MTMGSPEHMEQCIGFTGEIAETTAKIIARELAYELV >gi|284795438|gb|ADDQ01000111.1| GENE 15 12934 - 13107 293 57 aa, chain - ## HITS:1 COG:no KEGG:EF0665 NR:ns ## KEGG: EF0665 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 57 1 57 57 73 100.0 3e-12 MLSKEEVLHLLNEAKKEVDRLETNRQEDLGNSINYIENELQLQRVLSQVEAYEKVLG >gi|284795438|gb|ADDQ01000111.1| GENE 16 13220 - 14194 850 324 aa, chain - ## HITS:1 COG:BS_ykcA KEGG:ns NR:ns ## COG: BS_ykcA COG0346 # Protein_GI_number: 16078352 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Bacillus subtilis # 5 318 6 312 316 181 37.0 2e-45 MYAQIHHISILNRLIKPTFDFYHNTLGLKLLMKTINQDDHTMYHLFFSDNEQRTGTELTF FELNDGQDQSFGTNTIERTILKVPTRASLDFWAERLEQAGICHYGVETFNQHPILRFEAP DNTQMALVPLREFENAEDYFPAEHAEIPVEHAILGIDAIQLRVQYAAATKQPLVDYLHWH EKETVPFFETAHEVTVLENHHPQFYQEVHIIDDRTNPLAIEGIGGVHHVAFGVEDTQELT QVDSLLEEKNFTNSGIKDREFFKSLYFREPNHLLFEVATQKGLLDAESYENQSSNFDEIP LYLPHFLADQRERIEAILAQQRHE >gi|284795438|gb|ADDQ01000111.1| GENE 17 14225 - 14797 672 190 aa, chain + ## HITS:1 COG:BS_yodD KEGG:ns NR:ns ## COG: BS_yodD COG0400 # Protein_GI_number: 16079014 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Bacillus subtilis # 1 188 1 193 200 62 28.0 5e-10 MKQFFQKGSKPNQLVVAFHGTGGNEYQLLTTIATLYPEASVLSYLGTEGVGEQRRFFAPL VNGALPRANFDERVTAFLEEVWQPQKLYDEVIFIGYSNGANFILGLLEKNPTIANTVILL HPSNLGYQYVSGEFATKVIVTTGAQDELSIPGQVLSLANQLKKHFPVDFLLVDGGHGLSE EEVTKIKEVL >gi|284795438|gb|ADDQ01000111.1| GENE 18 14863 - 16389 1782 508 aa, chain - ## HITS:1 COG:SPy0388 KEGG:ns NR:ns ## COG: SPy0388 COG0769 # Protein_GI_number: 15674533 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Streptococcus pyogenes M1 GAS # 3 504 2 481 481 457 50.0 1e-128 MTISLFAIRDCLEKEDLLKEFISPEGWHLTLSDTLGQREITALSYDSRDVTAETLFFCKG LNFKEIYLENAVKDGLEIYVSEVPYEVSAQLGIIVTDIKKAMAVLSMAFYDYPQNKLKLI GFTGTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMA TAVANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQL ITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVESP ADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESLTNTN GATVYVDYAHNYDSLKNLLTFVREEHPDGCLIVLVGSTGDKAISRRKDFGRVLSELADVA VLTTDDPASEDPAKICQEIQTHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA DLYQKVNGVDEPYAGDFALAEAFINKKN >gi|284795438|gb|ADDQ01000111.1| GENE 19 16593 - 18242 1568 549 aa, chain + ## HITS:1 COG:SP1529 KEGG:ns NR:ns ## COG: SP1529 COG2244 # Protein_GI_number: 15901374 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Streptococcus pneumoniae TIGR4 # 19 548 1 528 529 447 47.0 1e-125 MINQPNSVDQPILTNQEKMVKGSAWMTASNIISRMLGAIYIIPWYAWMGEHGNEANSLFS MGYTIYALFLMISTAGIPGAIAKQTSHYNSLNEYKISRQLFYRALQLMGGLGVVFAIVMY LASPALAALSGGGPELVPTMRSLSLAVLVFPSMSVIRGYFQGNQEMMPFALSQIVEQVAR VFYMLLTAFIIMKVFEGNYVTAVTQATFAAFIGMLASFAVLGYYMYKQKPLFDYLEEHSA NEHEIAPKELLIETFKEAIPFIVVGSGVTVFKLVDQFTFSNFMRLFTDYSDTQLRELFGI FNANPDKLTMIVVALATSISATGLPLITEAVTLKNHRELARLISNNLQLFVFVMLPATFG MIVLAQPLYTVFYMPDALGTSLLVQACYASLFLGLYMLVSNMLMGMYENRDAMRYLGIGL AVKLIVQFPAIRLFEVYGPLLATMIGFTVSCVLILRRIRQVTRFNYKLTLRRTLLMFCIT VIMMIIALIFRQFLYLFLDPTRRFQAFIIVVIVAAAGGAFYGYSVLKIRLADRLLGKNAA KLRAKFNIK >gi|284795438|gb|ADDQ01000111.1| GENE 20 18351 - 19085 864 244 aa, chain + ## HITS:1 COG:lin2436 KEGG:ns NR:ns ## COG: lin2436 COG1187 # Protein_GI_number: 16801498 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Listeria innocua # 1 239 1 233 233 270 60.0 2e-72 MRLDKFLADVGIGSRKEIKQLLKKKVVTVNGDVVKEAKTQVNEETDQIALMGEILTYQKF FYYMLHKPQGVISATEDQRDETVIDLLTDQDYRADLFPVGRLDKDTEGLLLLTNDGQLAH QLLSPKKHVDKEYLAEVEGLVTAEDCQLFAQGFALKDGEMVKPSRLVIETINEEEGTSVV RLVIQEGKFHQVKRMLATVGKPVTYLKRLRMGELWLDETLELGEYRPLTEAELQQLQPKQ SYLN >gi|284795438|gb|ADDQ01000111.1| GENE 21 19219 - 20634 1934 471 aa, chain + ## HITS:1 COG:SPy1070 KEGG:ns NR:ns ## COG: SPy1070 COG0624 # Protein_GI_number: 15675062 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Streptococcus pyogenes M1 GAS # 2 471 3 469 469 549 58.0 1e-156 MTIDWTKEVEARKDDLLEDLQNLLRINSERDDAQATPEAPFGPGPVAGLKHMLAYGERDG FTVKNVDNYAGHIEYGEGDETLGIFGHMDVVPAGDGWETDPYEPVIKDGKIYARGASDDK GPSMAAYYAMKIIKELGLPVSKKIRFVVGSDEESGWGDMDYYFQHEEAPDFGFSPDAEFP FINGEKGNVTIRLTFRGGNGADYKLESFKSGLRENMVPGTADAVVTAASADEAASLAASF ETFIKQEAKISGNAELSDKTVTFHVVGKGAHGASPQSGINAATFLATFLNDYSFAEGAYS FINTIAEFIHEDFYGEKLGVAFEDEKMGKLTMNAGIVNFDPENPENSLVTLNFRYPKGTS AEELQAKVQATVGETVTATQGDRNQEPHYVPVDDPLVATLLQVYEDHTGEKGQEQIIGGG TYGRLLKRGVAYGAMFPGYTDTMHQANEFMELDDLFRAAAIYADAIYRLAK >gi|284795438|gb|ADDQ01000111.1| GENE 22 20779 - 21012 409 77 aa, chain + ## HITS:1 COG:no KEGG:EF0672 NR:ns ## KEGG: EF0672 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 77 1 77 77 132 100.0 4e-30 MSETLIVNYLIKGRVKMNVEELVQKAKDLIGEGNVEHAQQFIEEHKDELGEHYHKITAML ADTTTDGLFDKIKGLFQ >gi|284795438|gb|ADDQ01000111.1| GENE 23 21176 - 22195 780 339 aa, chain - ## HITS:1 COG:lin0994 KEGG:ns NR:ns ## COG: lin0994 COG3594 # Protein_GI_number: 16800063 # Func_class: G Carbohydrate transport and metabolism # Function: Fucose 4-O-acetylase and related acetyltransferases # Organism: Listeria innocua # 5 286 7 288 343 103 30.0 6e-22 MENDKRIYKWDNVKLFLIFLVIFGHILDREAAPSRLMETINFWIYSFHMPAFIFVSGLFS KHTIKQRKYLRLLSFVWLYLLAKLLITLANFAFANKMNFDLLNETGVPWYLLSLASFYLI TIFLQRVQPKIMLPIIIVIGCASGYLPVEGFLSLGRTLGFFPFFYCGYLMNIQKLQTFLD HRKVKWAAIGVILSSFLFVNSQWSLATKFWGFLTGWASYAEISPAFEYSSFIQLFFYVAA ALVSLSWFALLPKRKLPLSALGKDTLYPYLLHMPLIILLESGLQLDTLFKEWFTFRILAL FFLALFILAITNMPVVKRGADYLFNPIAYVLPKQWLKVK >gi|284795438|gb|ADDQ01000111.1| GENE 24 22432 - 23385 917 317 aa, chain + ## HITS:1 COG:lin1460 KEGG:ns NR:ns ## COG: lin1460 COG1125 # Protein_GI_number: 16800528 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, ATPase components # Organism: Listeria innocua # 1 317 1 325 327 305 50.0 7e-83 MIKFQNVSKVYQENAVLSDVNLTIQQGEFFVLVGPSGSGKTTTLKMINRLIEPTTGEVAL NEQAVTNYPLRELRLKIGYVLQQIALFPNLTVAENIELIPEMKKWPKEQRRERTIELLKK VQLNPEEYLHRKPAALSGGEQQRIGILRAIAAEPEVILMDEPFSALDPISRHHLQRLVKE LHQELASTIVFVTHDMNEALLLGERICIMDAGKIIQVDTPEAIQKHPKNNFVGQFFKQSS PELANYCGADLTAFLEAADETIEPVPTVFMETNLKEIVQLINAQEKANLVEKQQVLGCIT SKTITRFMEQLLESEGQ >gi|284795438|gb|ADDQ01000111.1| GENE 25 23386 - 24903 1564 505 aa, chain + ## HITS:1 COG:SP1860_2 KEGG:ns NR:ns ## COG: SP1860_2 COG1732 # Protein_GI_number: 15901688 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) # Organism: Streptococcus pneumoniae TIGR4 # 212 505 5 298 299 340 58.0 4e-93 MQALIETFFARKEEYLQALIEHMQLSFISLLFAALIAIPLAIYLTSHRKLAESLLQVTGI FQTIPSLALLGLLIPLIGIGRSPAIVALVIYALFPILQNTYTGLTEIDPSLEEAAEAFGM SKKEKLFKFELQMALPFIISGIRTATVLIIGTATLAALIGAGGLGTFILLGIDRNNLSLI FIGALSSAALAVLFNYGIHWLEKANGRRLIIGGTILGLLLGGSFFWNQQTSSKEKQLTIA GKLGAEPDIIINMYKALIEENSDIQVTLKPNFGKTTFLYNALKSDEIDLYPEFTGTVIET FLKNPPQLDNQPQVVYEAARAGLKKQENLTLLKPMRYENTYAVAVKRSFAKAHQLKTISD LQKISNQLKAGFTLEFIDRQDGYKGLQEKYHLNLNVQSMEPALRYQAINNGEVNVIDAYS TDSELKQYDLVTLEDDQALFPPYQGAPLIKTATLEKYPELAEILNKLAGKISEEEMSEMN YQVNVEGQDPSIVAKDYLKEKNLLK >gi|284795438|gb|ADDQ01000111.1| GENE 26 25045 - 25500 716 151 aa, chain + ## HITS:1 COG:lin1404 KEGG:ns NR:ns ## COG: lin1404 COG1438 # Protein_GI_number: 16800472 # Func_class: K Transcription # Function: Arginine repressor # Organism: Listeria innocua # 1 150 1 149 149 107 38.0 9e-24 MKKAERQRLIKQLIMQQEIETQDELITRLEELGVRATQATVSRDIREMSIVKTHGADGRV KYAIFSQAQGTSSEEKLRESVKDSVVRMERVQFIVILHTEMGNADVVSNFLDEVAYPEVA GTVAGADTIIVITRSEEDAEHFIERIENMIF >gi|284795438|gb|ADDQ01000111.1| GENE 27 25534 - 27042 1615 502 aa, chain + ## HITS:1 COG:lin1985 KEGG:ns NR:ns ## COG: lin1985 COG1109 # Protein_GI_number: 16801051 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Listeria innocua # 4 489 9 495 503 540 57.0 1e-153 MVELKALQNGSDIRGIALDTEEQTATLTATAVAEIAVGVVRWLQDKKQLPRKAQQRLTIA IGHDSRLTAEPIKQALVDTFLSLGIQVIDVGLATTPAMFMATQFPTLQCDAAIMITASHL PYYFNGLKFFTAEGGAEKEDIRYILSHTDPLTANENGTLMKQELLPIYAEHLVAKIRQGI HSPEEKPLQGFRIIVDAGNGAGGFFAEQVLQVLGADTTGSQFLEPDGHFPNHVPNPDNSE AMKSIQTAVLANQADLGIIFDTDVDRSAVVDQSGEVLNRNNLIAVLAAIVLKEAPGSYIV TNSPTSSHLKTFIEEKGGQQIRYISGYRNVINKMIELNHGGFQTPLAIETSGHAAFQENY NLDDGAYVVAKILMLLPELKQNNQTLGDLIATLKQPAETNEFRFKITAEDVTCYGQQVLR DFELFVENQADFAVDRENQEGVRGNVSGQYGSGWFLLRLSLHEPLLVLQVENDQNDKNAC VIEKIATFLQKYEEIDSQQIEK >gi|284795438|gb|ADDQ01000111.1| GENE 28 27066 - 27620 462 184 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116334854|ref|YP_796381.1| acetyltransferase [Lactobacillus brevis ATCC 367] # 1 176 1 176 177 182 50 6e-45 MENVLKGKHIGFSHFREEYIEHIAKQQWDNELLRHLSWDALHPWGLEEWKDFTINKGEDD RFLFAILENTTEEFIGWVSLSDVQLKNRGANLGIAILQKEQRGQGYGFEAVSLICKFAFY ELGLHKIRLAVNSNNQKAIHVYEKVGFKKEGIDREALFQDGQWLDIYNYGILQKEWLQMI KAES >gi|284795438|gb|ADDQ01000111.1| GENE 29 27746 - 28609 540 287 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 3 280 5 276 285 212 44 5e-54 MEYSMRLPENFSTMTVKELLENEWLVPRKVRHFLRTRKNVKINGETAAFHFPVQAGDCVT LTFEETDYVRPTIHLGEATRVKVLYEDEHLMIVNKPYGIKTHPNQPQETDTLLNHVAAYL AEKNQVPYVVHRLDKETSGAIVFAKNPFVLPILGRLLETKQIYRQYQAIVAGHFNQKEQT INQPIGRDRHDRRKRRIDPQKGDSAITHVQVVKALSNNQTAVTCVLETGRTHQIRVHLAS EGHPIIGDPLYNPKSQAARLMLHASQLHLLQPFTKKQIVVTAAPGLW >gi|284795438|gb|ADDQ01000111.1| GENE 30 28952 - 31138 2257 728 aa, chain + ## HITS:1 COG:SPy2059 KEGG:ns NR:ns ## COG: SPy2059 COG0744 # Protein_GI_number: 15675827 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Streptococcus pyogenes M1 GAS # 34 722 93 777 778 616 49.0 1e-176 MDNLKQFFSKVGVGLRHFWTWIKPYLIQFHQARKRIWKKYQINKIFLLIGLVVALGASIY LFYLAKSANVETLKSGLSESTRVYDESGEEVGKLFGQKGTFVELDNISPYIQDAVISTED RGFYQHKGYSIKGIARAVVGKLTFGKIGGGGGGSTITQQLAKNAYLTQEQTLDRKARELF LAIEIEKKYSKKDILAMYLNNSYFGNGVWGVQDAARKYFGVDASQVTVGEAATLAGMLKG PGIYNPIDYIDNATARRNTVLQLMVDNKKLSQEEANQEASVNLASLLNDTYVGDENSYKY PYYFDAVIDEAVNRYKFKEEDILNKGYKIYTSLNQKYQDAMDATYKNDALFPPNAEDGAM VQSGSVAIDPKTGGVQALVGGRGEHVYRGFNFATQTKRSPGSSLKPISVYTPALEAGYKP DSVLEDKPQDYYPAQNYSRTYSGEVPMYQALGESLNLPAVWLLHQIGLDKGYEKTEKFGI PLSEKDRYYGLALGGLQTGVSPLTMAGAYSAFANEGYKTETHLITKIVDSTGAIVVDNTK VKKEQVITKDVADGITSMLLGVFSSGSGVNAQPAGYVMAGKTGTTETNFDSSKTNDQWVI GYTPEVVIATWLGFQETSKTHYLEGSSATYASQVFNSQASGILPEVKQAQFPVADAYATG GKVVDSNDSLTGGANSNWRDNLKDFGNSVQDGASNFGDTLNEVGGQIKDGAKKVKDKIEG IFGGLLGN >gi|284795438|gb|ADDQ01000111.1| GENE 31 31201 - 31542 568 113 aa, chain + ## HITS:1 COG:lin2326 KEGG:ns NR:ns ## COG: lin2326 COG3679 # Protein_GI_number: 16801390 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 3 112 4 113 117 87 50.0 5e-18 MSNIYDTANQIERELRELDEFKALQAAYEEVKADEAAYTLFKEFQGFQQGLQEKQMRGEE FTDEDAEKAQSIATKVQETAVINELMQKEQAFSLVVNDLNRIIMTPVRDMYND >gi|284795438|gb|ADDQ01000111.1| GENE 32 31611 - 32069 370 152 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227517644|ref|ZP_03947693.1| ## NR: gi|227517644|ref|ZP_03947693.1| hypothetical protein HMPREF0348_0627 [Enterococcus faecalis TX0104] # 1 152 1 152 152 282 100.0 5e-75 MLSVEQLAQELNVTTRTIRNYLKEGKIKGTKIGGQWRFSERDIYDFLGKSDDIIVKNTAI ESYVKDVPQNNEGLVTLTFSLNTESDIEFVKNKILKHFNSVYGSNQQNKSFEYQLLPRNL VRITLIGPHAYILNFGNWLTNFIELSIQNYQE >gi|284795438|gb|ADDQ01000111.1| GENE 33 32085 - 33647 963 520 aa, chain - ## HITS:1 COG:CAP0073 KEGG:ns NR:ns ## COG: CAP0073 COG2274 # Protein_GI_number: 15004777 # Func_class: V Defense mechanisms # Function: ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain # Organism: Clostridium acetobutylicum # 4 517 159 686 731 127 24.0 5e-29 MEKIMKKNKKFVFLVSLTAIVTTLTSLIAPIIIQYLTNKKNLNSQAMIYIFLAMLLSLVI QLVIMVYKENFAARFNSNYLFTLINKMIHLKYDSYITLEPTYLINRIFSAVDALYLFLIS SFSVTIKSIFTILLSLLMVSYLSIEIVLFMVLLIPLNYFGFKYINKKLKVRMENMQKNAA VANKNLISTLSNQDAVKAGISAEILENLLYEKINLMYQSVASTNKFAQSTSSIIAFINQS FQTFVYIRTSMLIAADNLPISSLIILSILLPLFFSSLSELSKVTIDLNTLTTANTFIKDS LDKNIERDGDIDIDAIASIQLFFPTFEIDGNQFQYRIQENLQNGDRVYLTGKSGSGKSSL LKLLLKFRESAGIMINDLPINAINNKSLRNKIAYLAQEPTILTETLEKNIGMGTPLSYEQ KQLILNTGILNPILKTKDWETVLTENGNNLSGGEKQRIAVARLILADADVYILDESTSNI DEESSQAIFETLLECVKDKIFIFTSHDKKNSQYANKIINI >gi|284795438|gb|ADDQ01000111.1| GENE 34 33832 - 33921 278 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKFNKPELKKIGKTIQLGCMCGILVGTGT >gi|284795438|gb|ADDQ01000111.1| GENE 35 34077 - 35309 634 410 aa, chain + ## HITS:1 COG:MT0720 KEGG:ns NR:ns ## COG: MT0720 COG0535 # Protein_GI_number: 15840098 # Func_class: R General function prediction only # Function: Predicted Fe-S oxidoreductases # Organism: Mycobacterium tuberculosis CDC1551 # 71 373 7 330 391 102 27.0 2e-21 MLKFYFYRNKVIVHNPIISSWIGIEENELPILEKYLKTRDRHDISKDLLRKIELYRIFDF TDLEVEENFHKLIENFSIPRTVYIVVTEECNLKCIYCYAEAGPGKKLRRELDYEEYDKIF KQLKVAGVKKIVFTGGEVGLKKNFYKILDNAYKKGFICNLISNGRVAYNIKQAKFLSERC YKITISLDSLNENNNDDNRGRGCFKVATKALENLIKLNFKNLAINQTITKNNIADIDTMV TFAKSHKINLNIGTFCKLGRGFDDISLTKDERKEIDRIAMKYKKALNPFTIKVHCGQGIG EFSIDPIGNVYTCKLLDQKDFYLGNVRAEPLDYIFKNKKIDHFSYSSLGMEPCKNCSFKL LCGGSCRANHYYSKSKDDSSNVINNEECKIIKGMILEQMYQFVYGGKEHA >gi|284795438|gb|ADDQ01000111.1| GENE 36 35302 - 35574 297 90 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227517647|ref|ZP_03947696.1| ## NR: gi|227517647|ref|ZP_03947696.1| hypothetical protein HMPREF0348_0630 [Enterococcus faecalis TX0104] # 1 90 1 90 90 141 100.0 1e-32 MLSINEKINYEDKGEFLVISLNEDGFMLEDKTSIFIFHRIEAKKFKNIDEAVSRLSKEFD TDNQNMYIVREQIKAFIEELLKYDVVVMRQ >gi|284795438|gb|ADDQ01000111.1| GENE 37 35601 - 36071 163 156 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256959818|ref|ZP_05563989.1| ## NR: gi|256959818|ref|ZP_05563989.1| predicted protein [Enterococcus faecalis Merz96] # 1 156 11 166 166 284 99.0 2e-75 MPTYKEGDILVAQCSNFEISTGKIVVIKSLYNNFFAHRVVSIGEGLAICKGDNFKYFDPP VRTNSIVGVIEDQADDSYVKEKIKIRAIYSNEKISDNFNILVLSKNLLREINLENLVNFE VPVDSEEFCIYYRYLSNNLPKNQNDFFNKFDSIFSI >gi|284795438|gb|ADDQ01000111.1| GENE 38 36345 - 37580 1297 411 aa, chain + ## HITS:1 COG:lin2325 KEGG:ns NR:ns ## COG: lin2325 COG0420 # Protein_GI_number: 16801389 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Listeria innocua # 1 281 4 283 411 181 37.0 3e-45 MKLLHTADLHMDRSFEGLTGIPTALAKRLREANQQLLMNIVTVAIREAVDLVIFAGDTFH QSQTSISMQAQLMAALEQLKQAEIPVILTFGNHDYYKKDRYWFSFPDNVFLFEKEMVETL YFETKAGEQVAVSGFSYEHPWIDENKALEFPIKQAESDIHIGIYHGDTSRKAQQNYAPFT WKDLKATGYNYWALGHIHQPQIVSEQPLIVYPGTPQGHTKKEQSLQGVAVVTLSQNQATV QFEKVAEIDWTNEEVSLAQCRDTQSVLSYLETSLLTKWHAHQQQQLMALTLKETQHLDVT VVQAIVNGELLSYLQQQLLQKTQGDFFVYRLILQAEEPTKEPIYLAASPNLLTALEKTYL DPVIFEDTTKELLRYPEFAGIFSMDEQWRLESLRLAHEQINEDFTIQEDPL >gi|284795438|gb|ADDQ01000111.1| GENE 39 37577 - 40288 2897 903 aa, chain + ## HITS:1 COG:lin2324 KEGG:ns NR:ns ## COG: lin2324 COG4717 # Protein_GI_number: 16801388 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 895 1 908 908 217 25.0 1e-55 MKLLAVEIVGFGKWQQQKITFESGNQLLYGANEVGKSTLYQFIQAMLFGFPTKGKRKRDY APKNGGSYGGRLWLAHPVFGEVQVERFKEKNKGQAIIYYQQQMGDEKTLQQMLHPLTKKL FQEVFTFQQEQLITSDKLTEEELQTSLLAIGVSGSQQLLTYRNAYFKEAQKIFKGKGQQP LLNQKLAAYQELKEQIQEKEAQQQTFQQLEETIRETEQQRVTLQQQLKETQQDLLQVAEQ QRHFPLYEEWQSLPEETENVVLVKEDQVQLEETFQEYMYLDKERQRLTKELSLQSEALDV PEGYAFYLEQEALIQQLLNQRYDMQQLMTESEWMTQTFDQNRQEMVLLENEWSWSPERPP QLFYDNETVQKWRQQQVAYTQALQKGQEQKAFLASQIENLEDQLTDFEKAHAAFFGEATR AQKAQKTSQPLWLLLGSILALLGFFLPSPLKWGLVLVGVSFIAKEVLSYATRKEASSDEV KEEWQTKLSQLDYLNEQFQQALNQEREAQLQVEQLEQAVAEQAQVHQLGKMQQIDTLMNQ RELITRYLLLVQTNEELMSQLKENQQKRQGFEEQVFPLMTHLPLQGKSLSEKLHFLEGFA EEMEKVRFAQEYQADGYLKQQLRELKTKQQEALTRIQPLLIRYRILSIADVPSRIQQLTT QQAQVGRGQELATQLGNLFPEAVTEATLKDRSLQLAQQQALEESQLNKIQEQYQALIYEK QQLMTDGTLDELYQRQAILKAEIKELAQRWSGYQLAGQLLMDLLTELSEQQLPSLLQYAS SYFALLTSQRYQSIQVAEGQLVAVTKEQEMFYLHELSTGTKDQLMMAVRFAFLAVQGEQL ICPIIIDDGWLHYDHHRKAQLAELFTKFGQKQQVICFSSDQEMVSYYQDLQQRVIALEGG SVK >gi|284795438|gb|ADDQ01000111.1| GENE 40 40285 - 41229 983 314 aa, chain + ## HITS:1 COG:SP1980 KEGG:ns NR:ns ## COG: SP1980 COG3481 # Protein_GI_number: 15901803 # Func_class: R General function prediction only # Function: Predicted HD-superfamily hydrolase # Organism: Streptococcus pneumoniae TIGR4 # 10 311 4 305 308 366 58.0 1e-101 MKKLRELTVEELFESFVLIKNADVRVAKNGKKFIAFTFQDTSGTIDGKYWDASEDEITRF TAGNVVLLNGKREVYQNKPQVKILHMRLATAEEPSQPSLYMERAPLKKEEMVEEINQVIF EITNAHWNRIVRYLMTKYQQEFYEFPAAKRNHHAFANGLAYHTVSMLRLGKAIAKEYPEI NTSLLYAGIILHDLGKVLELSGAITTEYTVAGNLIGHLVLVDEEITKACLALKIDDREED VVVLRHMVLAHHGLLEYGSPVRPRIMEAEILHQIDTMDASIQMMLGAIRQTQPGEYTERI FGLDNRSFYVPKDK >gi|284795438|gb|ADDQ01000111.1| GENE 41 41269 - 42297 1214 342 aa, chain - ## HITS:1 COG:SP0981 KEGG:ns NR:ns ## COG: SP0981 COG0760 # Protein_GI_number: 15900858 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Streptococcus pneumoniae TIGR4 # 1 297 1 299 313 166 41.0 5e-41 MKKKLILAAAGAMAVFSLAACSSGSKDIATMKGSTITVDDFYNQIKEQSTSQQAFSQMVI YKVFEEKYGDKVTDKAIQKKFDDAKKQVEAQGGKFSDALTQAGLTEKSFKKQLKQAEAMQ VGLKDHLKITDEDLKTAWASFHPEVEAQIIQVASEDDAKAVKKEITDGGDFAKIAKDKST DAATKKDGGKIKFDSQSTTVPAEVKEAAFKLKDGEVSEPIAATNAQTYQTTYYVVKMTKN KAKGNDMKPYEKEIKKIAEETKLADQTFQAKVISDELKAANVKIKDDAFKNALAGYMQTE SSSASSEKKESKSSDSKTSDTKTSDSEKATDSSNKTTESSSK >gi|284795438|gb|ADDQ01000111.1| GENE 42 42461 - 42805 286 114 aa, chain - ## HITS:1 COG:no KEGG:EF0686 NR:ns ## KEGG: EF0686 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 114 1 114 114 200 100.0 1e-50 MKKFIKGLFFGAAAGTIGGLLAAPRSGKETRQHLINELEDYRSLKNQVTNDWDQVQRNLA VVEENVPLATEFSKDLQQEITDFKFQAEPRIAQIKEQIAKITAELPDTQTNKQK >gi|284795438|gb|ADDQ01000111.1| GENE 43 42806 - 43231 429 141 aa, chain - ## HITS:1 COG:lin2319 KEGG:ns NR:ns ## COG: lin2319 COG0537 # Protein_GI_number: 16801383 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Listeria innocua # 1 141 1 140 140 181 60.0 3e-46 MNDCIFCKIINGEIPSYKVYEDEKVYAFLDITQVTKGHTLMIPKQHVADIFEYNDVLASD VFARIPKVARALEKAFPEMEGLNILNNNKEVAYQSVFHSHVHLIPRYSKEDDFSIHFGNH QEDYSAEAMQEIAETIAKQVN >gi|284795438|gb|ADDQ01000111.1| GENE 44 43447 - 44184 262 245 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 2 232 8 239 309 105 30 9e-22 MSLTIEHLTGGYGHIPVLKDINFDVKSGEMVGLIGLNGAGKSTTIKNIIGLLTPQKGKIM IDGETLQQAPEEYRKKIGYIPETPSLYEELTLKEHIEVTALAYDIPLEEAFKRAEPLLKT FRLDNKLEWFPANFSKGMKQKVMVLCAFLIEPSLYIIDEPFLGLDPLAIHALLELMDTMR KQGAAILMSTHILATAEKYCDRFVVLHEGKLRANGTMAELRAEFNLPESSLDDIYLALTK EEKVG >gi|284795438|gb|ADDQ01000111.1| GENE 45 44186 - 45397 1030 403 aa, chain + ## HITS:1 COG:lin2317 KEGG:ns NR:ns ## COG: lin2317 COG4473 # Protein_GI_number: 16801381 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted ABC-type exoprotein transport system, permease component # Organism: Listeria innocua # 4 403 10 405 407 187 33.0 2e-47 MGEFFSQRLSRHFKKMSKYLRYILNDHFVLVCMFLLGGLGLYYSQLLKELPRDFVWGRPL ILLGWLLLIQVGKLATLTEEPDKVFLLPKEKQFAAYLKRALRYSLLLPIVVSFLGSGLLM PLIVVTTGWSFQTFFLFLVMLVCMIYTHLSLQSYGLYHLSSTTYRSWWFVWLISSLLIMT GAIYWTPWVGVVGGIILAVGLSSIWQNKMKQSFLDWEKMIQKEQNRMHRIYKFIQLFTDI PEVSSTVKRRKYLDPLLGVVKKTSENTYAYLFIRSFLRGSEYSGLLFRLILVGGVLLFFL QEFWIALVVALLFVYLIGFQLIPMYTQFDYMVMTQLYPISIEKKQAAIRRLIGGALSVAA IIFGGIVCLRLGSLQNSLLILGALIVEVVIFTKMYVPMRLNKL >gi|284795438|gb|ADDQ01000111.1| GENE 46 45526 - 46305 758 259 aa, chain + ## HITS:1 COG:L155396 KEGG:ns NR:ns ## COG: L155396 COG0510 # Protein_GI_number: 15672730 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted choline kinase involved in LPS biosynthesis # Organism: Lactococcus lactis # 5 255 2 252 257 201 37.0 2e-51 MEFQLDKDWRLQPIKGATGQTYMGIKETEKVFIKRNTSPLLAALSKEGLAPKMIWTKRTA NGDVLTAQEWLEGRLLHADEIGKRNDVIDVLYQLHHSNLLKDMLKKIGGEVCTPLTMLKE YKRQLPKELKRNSYLKEVITYLYNHLPEYPETSYVAVHGDVNHRNWLVSNNYLYLVDWDS VMVADPAVDLGMILSHYVPRSGWNQWLLSYGLIPNESTVQRIYWYGLFSFLQEIVRHHQE GERRAMTAEILQLKRMFSS >gi|284795438|gb|ADDQ01000111.1| GENE 47 46378 - 47022 1016 214 aa, chain + ## HITS:1 COG:SPy1726 KEGG:ns NR:ns ## COG: SPy1726 COG0220 # Protein_GI_number: 15675576 # Func_class: R General function prediction only # Function: Predicted S-adenosylmethionine-dependent methyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 211 1 211 211 296 66.0 2e-80 MRVRNRPGAAEYMAKYPQYVVEGPEKWQGKWQERFGNNHPIHIEIGSGKGRFIYEMAKAH PEINYIGIDMQLSILSIALDKLVAEPLPNLQLLRVDGEALTEYFAENEVDLIYLNFSDPW PKKKHEKRRLTYKNFLATDEIILKPNGEIHFKTDNQGLFEYSLSSFSKYGMIIERVWLDL HNSEFEGNIMTEYEEKFSSRGQRIYRVEARFVAK >gi|284795438|gb|ADDQ01000111.1| GENE 48 47082 - 47828 529 248 aa, chain - ## HITS:1 COG:L47971 KEGG:ns NR:ns ## COG: L47971 COG1737 # Protein_GI_number: 15673967 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 5 246 4 241 244 139 36.0 4e-33 MEQKLSESEQYLWHFIETHILEIPDYSIVKLSERANVSTATIVRTMKKKGYEGFTSFKHH LKDKENQNINFSALEKVDRGIRTAILKNEEEVTRTINMIEIGNIEDAIQKIKASRRIIIF ARGFSELIAQEMMVKFQLAGKYCELHTDPEIIKNISKKLSKKDVALFVSLNGETQELVVA GKNCYDSEIGTILLTASKHSSLMKYIEIPFVGFKSEGSFFPDYEVRSRLPLSILARILLD AYALRTTT >gi|284795438|gb|ADDQ01000111.1| GENE 49 48006 - 48932 939 308 aa, chain + ## HITS:1 COG:BH0827 KEGG:ns NR:ns ## COG: BH0827 COG1105 # Protein_GI_number: 15613390 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Bacillus halodurans # 3 303 2 299 306 216 40.0 5e-56 MTIYTCTLNLAIDLFIETEELVPFVVNRTKEDDIQANGKGVNVSLILKMLGIDNTALGVK AGFTGNYVEDYLKEKEITTDFIEVAGTTRINVFTKVTQDQKEYKLVNKGPKLSEEHVQRF LKKISELRKGDYLCVSGSLPQGVSPSILIEISRICFEKQVFLILDSSYEEILDCLPYQPF LLKPNEEELQEWFHTEVQTKDDYIFYGQELLKRGAKNILLSLGSEGALFMNNEKVLSGNS PTGMVVNTACSGDAMLGTFLAGWHQGLSLEKNLKRSIAAGSSTAFRKGLTDFSDVQELEQ QIKIQEEE >gi|284795438|gb|ADDQ01000111.1| GENE 50 48937 - 50355 1837 472 aa, chain + ## HITS:1 COG:STM3255_2 KEGG:ns NR:ns ## COG: STM3255_2 COG1299 # Protein_GI_number: 16766553 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Salmonella typhimurium LT2 # 132 456 1 324 350 394 63.0 1e-109 MATYQLIAATGCPTGIAHTYMAQEALEQAAKRKGITIKVETHGQIGIENELTPAEIQGAE AVIIAADKDVQAERFAGKRIIDVPVSVGIKEADRLIEEALAGKGSIAAENQAVDELEQET QISSGNVGHSIYKNLMNGVSHMLPFVVAGGVLIALSFAIWGIYSFDPESSQYNATAAMLK SIGDASMGMMVPILSAYIAEGIAKRPGLVVGFVGGLIANTGGTGFLGGILSGFLAGYFIL LLQRVFKGLPKSLDGLKAIFLYPVIGVAVIGITMSLLADPMKAANEGMMSFLASFQNSSP LVLGIIVGCMCAFDMGGPVNKAAYVTGTALLAQGNTSFMAGVSAACIAPPLITGFATLFF GKYFDTNERNAGLVNFILGSTHITEGAIPFAAKDPLKVLPIMMLGSSIAAVLTYMFGVQV PAPHGGFLVLPVVTHAVQWVLAILAGSLVGGLLLGFVQKSRIAKQEQSLSKK >gi|284795438|gb|ADDQ01000111.1| GENE 51 50382 - 50843 610 153 aa, chain + ## HITS:1 COG:hrsA_1 KEGG:ns NR:ns ## COG: hrsA_1 COG1762 # Protein_GI_number: 16128706 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Escherichia coli K12 # 11 149 34 173 183 84 29.0 8e-17 MAFIKENHIFLNQQLQTQEDVFHFLAKKSTELEVAQDAQEVFDKLNEREQEGTTGMMNGF AIPHAKAATIQQAAIIIVTLDQGVEWQSLDNQLTEFVIALFIPDAEAGTTHLKLLSSVAR LLLREEVTSGLKQASSPAEIATLLNNRLGEGTE >gi|284795438|gb|ADDQ01000111.1| GENE 52 50840 - 51817 1108 325 aa, chain + ## HITS:1 COG:SA1994 KEGG:ns NR:ns ## COG: SA1994 COG3684 # Protein_GI_number: 15927772 # Func_class: G Carbohydrate transport and metabolism # Function: Tagatose-1,6-bisphosphate aldolase # Organism: Staphylococcus aureus N315 # 5 319 4 321 326 374 62.0 1e-103 MKKISEQKRKHLENLVDDQGIIGALAIDQRGALKRMMGKYKEVTAQEISDFKVLVSRCLT PETSAILLDPEYGLAAAENRAQTSGLLLAYEKTGYDASTPGRLPDSLDVWSVKRLKEAGA DACKFLLYYDVDESEAINEQKKAYIERIGSECLAEEIPFFLEIVSYDANNSDSASKEYAK VKPHKVIEAMKEFSKDRYNVDVLKVEVPVNMNFVEGFGTESLYSQDEAQAFFNMQSEATQ LPFIFLSAGVSAAMFQETLKFAKKAGSSFNGVLCGRATWADGVLPFVQQGAEAAVAWLET TGKTNVDELNQVLRESAVSVFEKIQ >gi|284795438|gb|ADDQ01000111.1| GENE 53 52006 - 52539 390 177 aa, chain + ## HITS:1 COG:L196206 KEGG:ns NR:ns ## COG: L196206 COG3557 # Protein_GI_number: 15672951 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Uncharacterized domain/protein associated with RNAses G and E # Organism: Lactococcus lactis # 1 176 1 176 176 289 82.0 2e-78 MGIPKEGEFVTIQSYKHDGHLHRTWRDTMVLKTSEYSLIGVNDHTLVTESDGRRWVTREP AIVYFHKKYWFNIIAMIREKGVSYYCNLASPYVLDDEALKYIDYDLDIKVFPDGEKRLLD VDEYEFHSKLMDYPEDIDFILKENVKTLVDWINNEKGPFSPEYVDIWYQRYQQLSKK >gi|284795438|gb|ADDQ01000111.1| GENE 54 52627 - 53058 465 143 aa, chain - ## HITS:1 COG:SA0906 KEGG:ns NR:ns ## COG: SA0906 COG0454 # Protein_GI_number: 15926640 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Staphylococcus aureus N315 # 16 143 13 140 144 123 46.0 1e-28 MHVAQTKDTMSDLYLDAVRLRQRVFVAEQGVPEEMEIDEYEAHCIHFVLYTNHVAVATCR LLPLENGVMKLQRMAVEKAYRGADYGRVIMEAAENFAKEQGYHKITLGAQVTAVGFYERL GYQKTGAPFMDAGIEHYEMNKEL >gi|284795438|gb|ADDQ01000111.1| GENE 55 53203 - 54348 1368 381 aa, chain + ## HITS:1 COG:lin0908 KEGG:ns NR:ns ## COG: lin0908 COG0628 # Protein_GI_number: 16799980 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Listeria innocua # 3 362 4 363 378 305 47.0 7e-83 MINRFKESKLFFWSVELLVVAMLLFIASKINFLFAPIGTFFSTLFAPVLVAGFLYYLLNP VVNLLMKTKMKRIYAVLLVFLLLIIALVLILLTIIPKLADQLASLASSMPDFFKQVETWI YEIAELPIFKQIDLTSYIEKMDISYANIIQQFLSSLSSSLGSIVSTVASTTIVLVTAPFI LFYMLKDGDKLVPAVQRFLPEKRKDDIVDLLGQLNQTLSSYISGQAIECLFVGTFTIIGY SLLGVRYAFLFGVIAGFTNLIPYLGPYLGLAPAVLVTIFNEPVKAALCCLVVLVVQQLDG NIIYPNVIGKSLKIHPLTIILILLVAGNLAGLLGIFLGVPFYAICRTTIYYVIDMVKAGR SEKVTNAVLLGNETNTKENNG >gi|284795438|gb|ADDQ01000111.1| GENE 56 54523 - 55902 1639 459 aa, chain + ## HITS:1 COG:L64811 KEGG:ns NR:ns ## COG: L64811 COG1253 # Protein_GI_number: 15673796 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Lactococcus lactis # 1 443 1 442 449 465 57.0 1e-131 MNNADPESQSLIAQLLLLVVLTFINAFLAAAEIAVVSVNKNRVEQKAEDGDAKAQKLLKV LQDPNNFLSTIQVGITLVNILSGASLAETLSSRLAPVLGGGAAAKSLASIIILALLTYVS IVFGELYPKRIAMNKSEEVAQLTSGAVRFLGVIARPFVWLLSASTDLLSKITPMTFDDAD SKMTRDEMRYMLETEGVLENEELEMLQGVFSLDTKVAREVMVPRTDAFMVDIQDDVQENI NLILGENYSRIPVYSEDKDKIVGILHTKTLLKAARNLGFENIELGAIIQEPLFVPETIFI DDLLYELKRTQNQMAILLDEYGGVVGLATLEDLLEEIVGEIDDETDEVENLYTQVADNEY LVQGRMLIDEFNEVFETDLHMSDVDTMAGYLITALGTIPDEGEKPSFEVGNIKLTAEEME GTRLLVLRVHFYDEETVDEEPEENRRFFRKEMEDDEPRR >gi|284795438|gb|ADDQ01000111.1| GENE 57 56076 - 57650 1880 524 aa, chain + ## HITS:1 COG:SP0439 KEGG:ns NR:ns ## COG: SP0439 COG4108 # Protein_GI_number: 15900357 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptide chain release factor RF-3 # Organism: Streptococcus pneumoniae TIGR4 # 3 524 1 514 514 798 76.0 0 MTINQKEAVDSRRTFAIISHPDAGKTTITEQLLLFGGAIRQAGTVKGKKTGNFAKSDWME IEKQRGISVTSSVMQFDYQDKRINILDTPGHEDFSEDTYRTLMAVDSAVMVIDSAKGIEA QTKKLFQVVKKRGIPIFTFINKLDRDGREPLELLEELEELLDIESYPMNWPIGMGKGLEG LYDIYNERVELYRPENNGGERFIPLKDGDIPSDLPLHNNSVYQQVLEDVELLVEAGDEFS EEKIARGDQTPVFFGSALTNFGVQTFLETFLQFAPAPHAHKTEEGGEVSPYEKEFSGFVF KIQANMNPAHRDRIAFVRICSGVFERGMDVTLGRTGKKVKLSNVTQFMADARENVTEAVA GDIIGVYDTGNYQIGDTLYEGKMNVQYEELPSFTPELFMKVTAKNVMKQKSFHKGIYQLV QEGAIQLYKTYLTEEYIIGAVGQLQFEVFQYRMSNEYNAEVVMTPMGSKIARWINPEDLD ERMSSSRNILARDRFDQPLFLFENQFAERWFADKYPDVELKSLM >gi|284795438|gb|ADDQ01000111.1| GENE 58 57826 - 58269 435 147 aa, chain + ## HITS:1 COG:no KEGG:EF0702 NR:ns ## KEGG: EF0702 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 147 1 147 147 232 100.0 4e-60 MNFYGIEYLKSQSNLNDYLKYFFIFALLIGLVIVFSFYVRHQIQTKYRELSIIIFLSLLF VLGVQYSNYQLNQNQHSQSSQMVHFVEQVAQEKKVSPEKVYVNGTQLADGTIVKIDEVFY KMSLSTDQQSYTLQETYLLTPTIEIIK >gi|284795438|gb|ADDQ01000111.1| GENE 59 58285 - 58932 700 215 aa, chain + ## HITS:1 COG:L163025 KEGG:ns NR:ns ## COG: L163025 COG2323 # Protein_GI_number: 15674091 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 1 209 1 209 211 319 80.0 3e-87 MQFYSPIIIKFALGIICLIVQINLMGKGNLAPTSAMDQVQNYVLGGIIGGVIYNDSITVL QFVLVLILWTLLVLILKFAKEHNRYVKQIVDGKPITLIKDGQVVVKECLKNGISANDLMF KLRANGIYEVQLVKRAVLEQNGQLTIVEYGDESIRYPIIVDGQANMDVLELIKKDEHWLL TQIQEQGFQRLQEIYLGEYLSGQLSLSPYEEKTIA >gi|284795438|gb|ADDQ01000111.1| GENE 60 59038 - 60069 1020 343 aa, chain + ## HITS:1 COG:no KEGG:EF0704 NR:ns ## KEGG: EF0704 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 343 14 356 356 579 97.0 1e-164 MIVLMGCQPDQRTEKMKESTEAEAGQVTSGASEATNATSVKQEEQANTNDQPKESAAKVS YERNGHTFEVDAVSGATVESNNGQSGISPEEKAQKMYWSGRPEIGEVQGDYYHHEVVFDG GYTALIDVVVKDQQIQLVEFDERGPKNYYSEEWAGVTKRLSGYANFQANNARTDQSLVTV VNTMTFLENQMVAENRLDGAFQTAKGQSNSANNGYLPAARALAKEIKEPSKEHYTSLTED FGEGLSGRLTVITLKDSGKITDLRYDEYFADTEEEIKDAKLKAYSRQSKYFSKDYAQKSG ENFKKEVDDLRKKAIEENKLVSPTNEEAWSENYQRLVKKITSQ >gi|284795438|gb|ADDQ01000111.1| GENE 61 60110 - 60424 434 104 aa, chain - ## HITS:1 COG:no KEGG:EF0705 NR:ns ## KEGG: EF0705 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 104 1 104 104 170 100.0 1e-41 MKLVNVTNSYKQLVNKQLENTDAYFVKVYSAGNTTAVYSEAAHHVEVLIMNKNRRIRPTE VKEILAKLLKRLPKEAYDPDEISIIELNHVTEVSVPLKVSLMEN >gi|284795438|gb|ADDQ01000111.1| GENE 62 60619 - 62859 1678 746 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 57 708 124 788 815 650 52 0.0 MICQNCQQNEATIHLYANVNGQRKQLDYCQSCYQKLKNQANNSPQNMGQDPFGFGSLDDL YRSLSRQMQQGNPYEQQTPPTQFGDGGNGGQPPRGGAGAGQGLLGEYGINITEAARQGDI DPVVGRDQEIKRVIEILNRRTKNNPVLIGEPGVGKTAVVEGLAQKIVDGDVPQKLLDKEV IRLDVVSLVQGTGIRGQFEERMQKLIEEITEAENVILFIDEVHEIVGAGAAGDGNMDAGN ILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVQVDEPTVAETITILHGLQKRYE DYHHVKYTDEAINAAANLSNRYIQDRFLPDKAIDLLDESGSKMNLTIQLVDPKTIDKKLA EAEQQKQQASAEEDFEKAAYYRDQINKLQAMKEKQISDEETPVITEKDIEAIVEQKTGIP VGDLKEKEQTQLKNLAVDLKAHVVGQDDAVDKVAKAIRRNRVGLGKQNRPIGSFLFVGPT GVGKTELAKQLAFELFGSEDSMVRFDMSEYMEKHSVSKLIGSPPGYVGYDEAGQLTEKVR RNPYSLILLDEIEKAHPDVLHMFLQILDDGRLTDAQGRTVSFKDTIIIMTSNAGTGAVEA NVGFGAAREGVTKSVLGQLNNFFTPEFLNRFDGIIEFKALSKENLMNIVSLMLEEVNGLL AKQKLHIEVPTEVKEKLVDLGYDPAMGARPLRRTIQEQIEDGIAEYYLDHPENHQLVAAL DNEGKIIVTGAQEVTKTETSTSDQAE >gi|284795438|gb|ADDQ01000111.1| GENE 63 62985 - 63161 125 58 aa, chain - ## HITS:1 COG:no KEGG:EF0707 NR:ns ## KEGG: EF0707 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 58 1 58 58 90 98.0 2e-17 MISPLFLLNINSYSLLENGAIVCKKIESLPFFKQGLLLDSLTKNAIITSKVKNGQVVL >gi|284795438|gb|ADDQ01000111.1| GENE 64 63161 - 63352 384 63 aa, chain + ## HITS:1 COG:no KEGG:EF0708 NR:ns ## KEGG: EF0708 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 63 1 63 63 108 100.0 7e-23 MAENPFVEKIASLKAGEISELIVEQNEFFQFRDAWISLPDRAEIVGEAGLNGRIIYRYQK EEE >gi|284795438|gb|ADDQ01000111.1| GENE 65 63523 - 63789 397 88 aa, chain + ## HITS:1 COG:L120335 KEGG:ns NR:ns ## COG: L120335 COG1925 # Protein_GI_number: 15672099 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, HPr-related proteins # Organism: Lactococcus lactis # 1 88 1 88 88 115 76.0 3e-26 MEKKEFHIVAETGIHARPATLLVQTASKFNSDINLEYKGKSVNLKSIMGVMSLGVGQGSD VTITVDGADEAEGMAAIVETLQKEGLAE >gi|284795438|gb|ADDQ01000111.1| GENE 66 63789 - 65516 2241 575 aa, chain + ## HITS:1 COG:SP1176 KEGG:ns NR:ns ## COG: SP1176 COG1080 # Protein_GI_number: 15901041 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Streptococcus pneumoniae TIGR4 # 1 573 1 573 577 861 78.0 0 MSEMLKGIAASDGVAVAKAYLLVQPDLSFNKTSVEDTDAEATRLDDALAKSTEELQAIRD KAAQSLGEAEAQVFDAHLMVLSDPEMVGQIKQNIQDNKVNAEAALKEVTDMYIGMFEAMD DNAYMQERAADIRDVAKRILAHLLGVTLPNPSMINEEVIVVAHDLTPSDTAQLDRTYVKA FVTDIGGRTSHSAIMARSLEIPAIVGTKEITDKVKAGDILAVNGIIGDVIIDPTDAEKSE FEAEAKAYADQKAEWDKLKNAETVTADGKHVELAANIGTPKDLEGVHKNGGEAVGLYRTE FLYMDSSDFPTEEDQYQAYKAVLEGMEGKPVVVRTMDIGGDKELPYLTLPHEMNPFLGYR ALRISLSELGDGMFRTQMRALLRASVHGNLRIMFPMVATLKEFRAAKAIFEDEKQKLVNE GVEVSNDIQVGIMIEIPAAAVLADKFAKEVDFFSVGTNDLIQYTMAADRMNERVSYLYQP YNPSILRLIKNVIDAAHAEGKWAGMCGEMAGDQTAVPLLLGMGLDEFSMSATSILKTRSL MKRLDTTKMAELADRALKECDTMEEVVALVEEYTK >gi|284795438|gb|ADDQ01000111.1| GENE 67 65561 - 66595 1054 344 aa, chain - ## HITS:1 COG:no KEGG:EF0711 NR:ns ## KEGG: EF0711 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 31 344 1 314 314 580 98.0 1e-164 MNQQLFKWLHAISVIIFLFFIGSYSVEASEMTFSVKAILPDNQRTKETSYFDLRVAPNQT QKLQIELTNQTANDITVLASANAAITNDNGLADYSHAETKKDPSAPFTFNEIAQLPKEIY LPKHSTKTVECQLTLPEKPFNGYVLGGLYFEQKSDEQPAHSENGVAINNRFSYVVGALLS ETDEPVQPELSLNEVKTDQANGRNRVLMNLQNKQAAMIKKLQVDASLYYEKEAKPRYENH QESLTMAPNTNFNYRIDLKEQPFVPGNYTVKIKANDGYQDYSWEKHLVIQEKEAKKYNAT AVNLPPETHTNFPWKLVSSITLVFLFILGSTIYYFKKKIREAQQ >gi|284795438|gb|ADDQ01000111.1| GENE 68 66676 - 67413 684 245 aa, chain - ## HITS:1 COG:no KEGG:EF0713 NR:ns ## KEGG: EF0713 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 245 1 245 245 373 99.0 1e-102 MKKIVRISSILFVATPLMLLNSPKVEAAQVASIQSNADITFALDNTVTPPVNPTNPSQPV TPNPADPHQPGTAGPLSIDYVSNIHFGSKQIQAGTAIYSAQLDQVQNSTGDLISVPNYVQ VTDKRGLNLGWKLSVKQSAQFATSDSTPAVLDNASLTFLAATPNSTQLLSLAPLTVPVTL DPTGAATSPVATAALSTGMGTWTLAFGSGATAAQGIQLTVPATTKKVAAKQYKTTLTWIL DDTPL >gi|284795438|gb|ADDQ01000111.1| GENE 69 67468 - 69753 1455 761 aa, chain - ## HITS:1 COG:no KEGG:EF0714 NR:ns ## KEGG: EF0714 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 761 3 763 763 1280 98.0 0 MNKFVWGIFSCIISWLFLSLTQPLIAHSETLNPTTHASTFSETFTSVSTEQQTTQATDIV EQETEQTHASSENDEPMAPTPASVSVGNSTLKSTLSTGTYNQDIITLSYEYSVTLIGLAI NDRPIIAIQLPTEISSQLDNDTLKQQDFLTLLTGTVSYPGTATQDIHSSTNGVSLSYSST YHSVYLTFPSSTLVLLPGTKWSTAISFDVGALYKRGISIPPALNGKDYPIRGTFTDVGTG LGAINIIIGNNTKTGVISKAQLSLGNYPVPQVTPAKLTQPNHLDTTVTGTIQQVQDPNYS YSVQLTLNHHDGTTTPIVVKGISVDAAGNFSTSLASPLEYGDMLSTIVFARSKTSTDYIQ SSPSADQSVNWSIQPVTNVVANAGSTQLSGKASQVSNGTYQVKVQINGGSIYTTSLDSNG HFQFANLPTFQGGETVSLWVQGLSNRTGLPLLTSSTVSQTVAYPVPQLTVTQIIERKNAQ GLWEAANSVVSGQIIRFTLTTRLTNQPATWMNQQLRVTVPKGLSQLSAATLTKQSAAGLS TPIAGLQLLTDSSTGLPYWSYHNSLPADNFTEANTQFTLQYTATVTEEWINQFLLFSSTV TGNDGGGTPITPITKEQSLPIKNGTLRFVQMPTTVSFKNLPFPSKRTIYSPSTISAPFLI ADGRVAKTPWHLLVRESQPMHSTSTNKTIQQAFIYRKNGSDFPLSSLATEVYQYTATDDN NVEIPWNQQNGLFLSVAPDLNLTVKESYTAELQWILSDTPL >gi|284795438|gb|ADDQ01000111.1| GENE 70 70107 - 71390 2001 427 aa, chain + ## HITS:1 COG:SPy1896 KEGG:ns NR:ns ## COG: SPy1896 COG0544 # Protein_GI_number: 15675709 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) # Organism: Streptococcus pyogenes M1 GAS # 1 427 1 427 427 456 63.0 1e-128 MSAKWEKKGTNDGVLTFSIEQAVIEKGLTQAFNKVKKNLNVPGFRKGKVSRTVFNRMYGE EALYEDALNAVLPEAYEAAVLEAGIEPVAQPKIDVESMNKGEDWVITAEVTVKPEVKLGE YKNLTVSKQDREVTDEDVEARLKREQESQAELVIKEDAAAENGDTVVIDFEGFLGDEAFE GGKGENYSLELGSNSFIPGFEDQLVGKKAGEEVEVNVTFPEDYQAEDLAGKEAVFKVTVH EVKAKELPELDDEFAKDVDDSVESLDELKEKFRKELTEAKEAAAEEAKDEEAIRLAVENA EIVELPHVMVHDEVHRSMDEFLNNMQRQGISPEMYYQLTGSTEEDLHKQFEGEAETRTKT NLVIEAVAKAENIEVTQEDIDAEVKDLAEQYNMPEAQVRKVLNNDMLEHDIRMKRAVETI TETAVEK >gi|284795438|gb|ADDQ01000111.1| GENE 71 71503 - 72165 556 220 aa, chain + ## HITS:1 COG:no KEGG:EF0716 NR:ns ## KEGG: EF0716 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 220 1 220 220 404 100.0 1e-111 MDKNYSKIKYGLVVFGILCLTYNLWEFFTAKYSTKQGVTFVIECLLGIGLIFLPDLVNKF LKIIMPPTIVYFYWFFLFISVFLGTSLHMISIISFWDKILHFVSPMLLTAVGYGIAGFLL KKTKYADVSPWLFLLFGFAFAGLCGVFWEFWEFICDSLGNMNLQRYNMSNGQPFIGRAAL MDTMGDLFTNTLGAFVMGVYTYIRSKGNPEYLENYAIKRK >gi|284795438|gb|ADDQ01000111.1| GENE 72 72212 - 74134 2319 640 aa, chain - ## HITS:1 COG:SPy0855_3 KEGG:ns NR:ns ## COG: SPy0855_3 COG1299 # Protein_GI_number: 15674888 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Streptococcus pyogenes M1 GAS # 299 634 2 358 360 422 65.0 1e-117 MNINDLLIKDVMIMDLQATDKKGAIDEMVQKLYDGGRISDIDTYKEGILKREAQTSTGLG DGIAMPHAKNSAVKEPTVLFAKSKKGVDYEALDGQPTYLFFMIAAPEGANDTHLQALAAL SRLLIDPEFVGKLKEAETPEAVQALFQAAEDQKEAEEKAEQEQTTPAPESNRKYIIAVTA CPTGIAHTYMAEDALKKKAKEMGVDIKVETNGSEGIKNRLTAEDIARADGVIVAADKKVE MNRFDGKKLVNRPVSDGIRKTEELINLAISGEAPTFHGSDSAASDQEDSAEGSIGSRIYK DLMNGVSHMLPFVIGGGIAIALSFMIDQFIGVPQDQLANLGNYNDVASWFNQIGGAAFGF MLPVLAGFIASSIGDRPGLVAGFAAGALANAGGAGFLGALIGGFLAGYVVVLLRKVFKGL PKSLDGIKTILFYPVFGLIITGLLMLVINIPMKAINDALNHFLLGLDGTNAALLGALLAG MMAIDLGGPVNKAAYVFGTATLASTVAEGGSVVMASVMAGGMVPPLAIFVATRLFKNKFT KDQQDAGLTNIVMGLSFVTEGAIPFAAADPLRVIPSFVVGSAFTGALVGAFGIKLLAPHG GIFVVFLLSNPLLYLLFILIGAIISGIVYGLLKKPVEVPA >gi|284795438|gb|ADDQ01000111.1| GENE 73 74158 - 75075 956 305 aa, chain - ## HITS:1 COG:lin2430 KEGG:ns NR:ns ## COG: lin2430 COG1105 # Protein_GI_number: 16801492 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Listeria innocua # 1 304 1 304 307 367 63.0 1e-101 MIYTVTLNPSIDFIVHVDHLQIGDLNRMTNDFKLPGGKGINVSRILKRMETESTALGFLG GFTGSFIADWLKKEEIQTNFTPVSADTRINIKLKSDTETEINGLGPALTNEEIQELKQAV SRVQAGDIVVLSGSTPASLRKGFYEELIQIVKEKGAEFVIDTTGEDLMNALSQKPLLVKP NNHELAELYHTTFTSVEDILPYGHRLLEEGAQHVIISMAGDGALLFTTEGVYRSNVLKRP LKNSVGAGDSMIAGFIGNFSKTQDPLEAFKWGVACGSATAFSDDLASEDFIQELIHEVTI EKISE >gi|284795438|gb|ADDQ01000111.1| GENE 74 75072 - 75824 731 250 aa, chain - ## HITS:1 COG:lin2431 KEGG:ns NR:ns ## COG: lin2431 COG1349 # Protein_GI_number: 16801493 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Listeria innocua # 1 250 1 250 250 221 48.0 9e-58 MLTEERHQKILQLLDQKSVVKSQELASLFNASESTIRRDLQELEDANLLERIHGGAKRIL NLGFEQNMTEKSIKNTHEKQKIASLAASCVQDGDMIYLDAGSTTLEMIPFLVGKQIHVVT NSVHHAAKLSDMEIPTIMLGGTLKLSTKAIIGATSMEQLQHFRFNKAFLGTNGAHLEFGL TTPDPEEAALKALAIHQAETAYVLLDHTKFNEVTFTKVEELESVTLLTDYCPAESLQGFQ QKTILMEANK >gi|284795438|gb|ADDQ01000111.1| GENE 75 75963 - 77522 1579 519 aa, chain - ## HITS:1 COG:SP1157 KEGG:ns NR:ns ## COG: SP1157 COG0038 # Protein_GI_number: 15901022 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Streptococcus pneumoniae TIGR4 # 36 492 42 499 516 327 46.0 5e-89 MNNDVHEIKQLDGTRIGFILKGIVVGILVGFVVSLFRLGIEKIGEQVVHLYQTFHEKPFW MIPWFLFSLVLAYLLGRLIKSEPAIKGSGIPQVEGQLQGQLEIHWFPVLWKKFIGGILAI SPGLFLGREGPSIQLGAVVGQGYSQWRQSTKSEEKILISSGASAGLAAAFNAPIAGLLFV LEEVHHSFSPLVWLTSFSAAISANFVSLHFFGLQPVLYIGPVKSLPLEYYWTLVLLGVLL GLLGWIYQKTLLSLPKVYGKIKGLSSNYYGFIPFILILPIGYFFPHLLGGGNQIVLALGN QPATIWALVGLLVLRFVFSMVSYGSNLPGGIFLPILTLGAIIGTLYGSLLVQYVGMDPIF VKNFLIFAMAGYFTAIGKAPLTAIILVTEMVGNFSHLMSLGVVALVSYITIDSLGGKPIY ESLLERLVPSKVSNIRGHKTIIELPITAESSLDDTMVRDFVWPKQMLLTSIRRGESEILT HGDTVMHVGDVLIILTDEKLAYQVKKEIYQKTLPNDLVN >gi|284795438|gb|ADDQ01000111.1| GENE 76 77687 - 79945 2683 752 aa, chain + ## HITS:1 COG:SPy1267 KEGG:ns NR:ns ## COG: SPy1267 COG0210 # Protein_GI_number: 15675225 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Streptococcus pyogenes M1 GAS # 7 751 4 771 772 886 59.0 0 MTQKHALVQGMNPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILA ITFTNKAAKEMKERVNKLLETGGEDVWVSTFHSMCVRILRRDVDQIGYNRNFTIIDPSEQ KTLMKRILNDLNIDSKKYDPRSILGTISNAKNELQTPEKVAEMQGSLYEEIVAKCYEAYQ KELRKNQCMDFDDLIMNTIRLFNEQPDTLAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAA RFKNLCVVGDADQSIYGWRGADMQNILDFEKDYPDASVILLEQNYRSTKNILAAANDVIK NNRNRREKELWTENIDGEKIVYYRGDTERDETQFIVSQIQKEMRENDRIYGDFAVLYRTN AQSRVVEEMLLKSNIPYTMVGGHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRG IGKSSIEKLRLFADTHGWALLEAAQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTIT ELVKETLQRSGYREALMAQNNLESQARLENLDEFLSVTQEFDKRFEAQNNDDPNGEETKL ADFLTDLALVSDLDNLEESSSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRAMLEESE LEEERRLAYVGITRAEEALFLTNAYSRTLYGRTQYNRPSRFLEEIEAERLMKQGAAANLQ KAPARTFDPKVFKPSASKPAYTQPATKSVSNKVASGGEKVSWQAGDKVQHKAWGVGTVVR VGGSAKDLELDIAFPEKGIKRLLAAFAPIEKI >gi|284795438|gb|ADDQ01000111.1| GENE 77 80071 - 82101 2300 676 aa, chain + ## HITS:1 COG:lin1870 KEGG:ns NR:ns ## COG: lin1870 COG0272 # Protein_GI_number: 16800936 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Listeria innocua # 10 671 2 663 671 801 59.0 0 MEQQPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI TPDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGKPVAYCCELK IDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPISVEVRGECYMPK QSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMKAKTQ FEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFALQDE LGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTVSRASLH NADFIQMKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEMPTHCPICHSELVHLD EEVALRCINPKCPAQIKEGLNHFVSRNAMNIDGLGPRVLAQMYDKGLVKDVADLYFLTEE QLMTLDKIKEKSANNIYTAIQGSKENSVERLIFGLGIRHVGAKAAKILAEHFGDLSTLSR ATAEEIVALDSIGEIIADSVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPF KDKTVVLTGKLTQYTREEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVT VWNEQEMVDALDASHF >gi|284795438|gb|ADDQ01000111.1| GENE 78 82255 - 82365 164 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSVEAALGLMIGFATLVVTIIFGILALVLDNKNNRS >gi|284795438|gb|ADDQ01000111.1| GENE 79 82683 - 82988 425 101 aa, chain + ## HITS:1 COG:L0475 KEGG:ns NR:ns ## COG: L0475 COG0721 # Protein_GI_number: 15672144 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit # Organism: Lactococcus lactis # 3 97 4 98 101 108 64.0 3e-24 MAITEEQVKHVAKLSKLSFSEEELADFTNQLDKIIDMVELLEEVDTTGVPFTSNVNESIN VMREDVATPGMDRKELMRNVPESENGYIKVPAIMDNGEAGA >gi|284795438|gb|ADDQ01000111.1| GENE 80 82988 - 84457 399 489 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 [Phaeobacter gallaeciensis BS107] # 1 472 1 452 468 158 28 1e-37 MEKLYDKSLTELHDLLVSKEITAVDLTEETLNRIQDTEEQLGSFITVSEEKAMALAKAID LKGITESNPLAGIPIGIKDNIVTKDILTTAGSKMLHNFDPIYDATVMDKVYQADMIPVGK LNMDEFAMGGSTETSYFKKTKNAWDQTKVPGGSSGGSASAVAAGQVPVSLGSDTGGSIRQ PAAFNGIVGLKPTYGRVSRFGLIAFASSLDQIGPLTRNVKDNALALNAISGYDEKDGTSA GVSVPDFTADLTGDIKGMKIALPKEYLGEGVQPDVREAVLKAAETFKSLGATVEEVSLPH SKYGVAVYYIIASSEASSNLQRFDGIRYGYRSENVQNLEDVYVNSRSEGFGTEVKRRIML GTFSLSAGYYDAHFKKAGQVRTLIKQDFENVFADYDLIIGPSTPTVAFGLGENINDPITM YMNDILTIPVNLAGLPGMSIPAGFSEGLPVGLQIIGKHFDEHTMYKAAYAFEQATDFHTK KPVILGGND >gi|284795438|gb|ADDQ01000111.1| GENE 81 84457 - 85887 1727 476 aa, chain + ## HITS:1 COG:lin1866 KEGG:ns NR:ns ## COG: lin1866 COG0064 # Protein_GI_number: 16800932 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) # Organism: Listeria innocua # 1 476 1 476 476 725 77.0 0 MNFETVIGLEVHVELKTNSKIFSSAPAHFGAEPNSNTNVVDWSYPGVLPVMNKGALEFGM KAALALNCEISKETHFDRKNYFYPDNPKAYQISQFDQPIGHDGWIEIEVEGKKKKIRIER VHLEEDAGKNIHGTDGYSYVDLNRQGTPLIEIVSEADMRSPEEAYAYLEALRSIIQFTEV SDVKMEEGSMRCDANISLRPYGQEEFGTKAELKNLNSMNFVKKGLAYEEKRQAKVLLSGG EIQQETRRFDEATSTTLLMRVKEGSSDYRYFPEPDVPRFSIDDEWIEKVRASLPEMPASR RARYISELGLPEYDAMVLTLTKEMSDFFEATLANGADAKQASNWLMGEVSAYLNSEKVEL ADTKLTPENLAGMITLINDGTISSKIAKKVFKELIENGGDAKEVVEAKGLVQLSDPAQLL PMINEVLDNNQQSIDDFKNGKDRAVGFLVGQIMKATRGQANPGVVNKLLQEELSKR >gi|284795438|gb|ADDQ01000111.1| GENE 82 85906 - 86994 1229 362 aa, chain + ## HITS:1 COG:SPy0752 KEGG:ns NR:ns ## COG: SPy0752 COG1597 # Protein_GI_number: 15674801 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Streptococcus pyogenes M1 GAS # 3 348 6 337 340 407 61.0 1e-113 MKKARVIYNPTSGKELIKKNLADILSILEECGYEASAFATTPEENSARNEAHRAARAGFD LLVAAGGDGTINEVVNGIAPLKRRPKMAIIPAGTTNDYARALKIPRDNIVKAAEVIKKNQ TVKMDIGQAGKNYFINIAAGGHLTELTYEVPSELKSIFGYLAYLAKGAEMLPRVKPIKMR MTYDEGVYEGNASMFFLGLTNSVGGFEQIVPDAKLDDGKFSLIIVKTANIFEILHLVALM LNGGKHVEDHRLIYTKTSYLHAETLEKNNKMMINLDGEYGGDAPMTFKNMHQHIEIFANG DALPSNAIMGSVLTGSDEIVVESEDEEEEAYNEASKEFVKEVERLTDEDIDGDGKIAEKE KH >gi|284795438|gb|ADDQ01000111.1| GENE 83 87194 - 88567 1665 457 aa, chain + ## HITS:1 COG:BH0687 KEGG:ns NR:ns ## COG: BH0687 COG2265 # Protein_GI_number: 15613250 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Bacillus halodurans # 5 452 7 454 458 484 54.0 1e-136 MKNYPVKKNDVIEVEIIDLTHEGLGVAKVDHYPLFIENALPGEKLEIKVLKTGKSFGYGK VLTVLKSSEQRVPVKDENFTKVGISPLQHLAYGAQLSFKTQQVENVMQRVAKLPEVPVLP TIGMNDPWHYRNKAQIPVRKIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDI MRKYSVKPYNESDNTGNLRHIVVRRGYHTGEMMVVLITRTPKLFPISKIVPDILEAIPEV VSIVQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKV KEYAALTGNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATF TAGLAEELLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPKRIVYVSCNPATLARD IALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTKAVD >gi|284795438|gb|ADDQ01000111.1| GENE 84 88568 - 88696 219 42 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227517695|ref|ZP_03947744.1| 30S ribosomal protein S9 [Enterococcus faecalis TX0104] # 1 42 1 42 42 89 100 9e-17 MNEKEKMLELIKKKQGGGRSKKMETPKNDRKNMRKGPKIFNK >gi|284795438|gb|ADDQ01000111.1| GENE 85 88836 - 89153 404 105 aa, chain + ## HITS:1 COG:no KEGG:EF0730 NR:ns ## KEGG: EF0730 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 105 1 105 105 179 100.0 2e-44 MEYVTTLEELEEKITDNRLQAVFLTAKNCSVCTVDKPIVEKIATKYEFPTYIAEADKSPE IIGQLNAFSAPTIILYYEGKEIHRQAKIINFQEIEKRVRQVQENS >gi|284795438|gb|ADDQ01000111.1| GENE 86 89194 - 90159 570 321 aa, chain - ## HITS:1 COG:L0226 KEGG:ns NR:ns ## COG: L0226 COG2771 # Protein_GI_number: 15673683 # Func_class: K Transcription # Function: DNA-binding HTH domain-containing proteins # Organism: Lactococcus lactis # 1 315 1 325 328 209 41.0 8e-54 MTFVFIYNILLIILYSFTSTFTLNLYLKNKQPIFLLLLFLMVIFICDNVIVYMTEFINSF ATEYNQTFMTAPFLKTIIFICCNFAYLAIINTISGRSFKNYQFVWLFLIGLWMLAIPFSQ NSALKVWLYYLPNQLFLIYLGCYALYQLRIDPLSALAKKYLRFIGWLSIGFGVAILLEDT FVIFNIDQYSDIVFKINNRNVSEDIYTIILSIAIIYFCNRDFPLSVLEKDAAKLEENQSD EPVLLAPFCDAYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNK RAEVFVSYQLFSQQQTEHLAR >gi|284795438|gb|ADDQ01000111.1| GENE 87 90438 - 91457 1183 339 aa, chain + ## HITS:1 COG:L0113 KEGG:ns NR:ns ## COG: L0113 COG0078 # Protein_GI_number: 15673682 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Lactococcus lactis # 2 334 6 338 340 551 79.0 1e-157 MKRDYVTTETYTKEEMHYLVDLSLKIKEAIKNGYYPQLLKKKSLGMIFQQSSTRTRVSFE TAMEQLGGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVERHHSIVDLANCATIP VINGMSDYNHPTQELGDLCTMVEHLPEGKKLEDCKVVFVGDATQVCFSLGLITTKMGMNF VHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDASSVEGADFLYTDVWYGLYEAELSEE ERMKVFYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVTDEVIDGKNSICFDEAENRLTS IRGLLVYLMNDYEAKNPYDLIKQAEAKKELEVFLDTQSI >gi|284795438|gb|ADDQ01000111.1| GENE 88 91524 - 92900 1299 458 aa, chain + ## HITS:1 COG:L138484 KEGG:ns NR:ns ## COG: L138484 COG0531 # Protein_GI_number: 15673681 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Lactococcus lactis # 3 448 4 449 466 583 73.0 1e-166 MEGKKKFSLTSAILSVICVVFVAEAAAPVAAIGNSQFFWWIFLLIAFLLPYGLISSELGT TYIGEGGIYDWVTKAYGHRWGARVSWYYWINYPLWLASLAVMTPELLTTITGIKFSTPMM IIVELIFTWIVVWISFYPVSDSIWILNGAAVIKMVLAVLIGGLGLYVALTKGVANEFTLK SMLPTFDLRSLSFISVIIFNLLGFEVICTFADDMENPKKQIPQAIVAAGLVIAAIYIFSA FGIGVAIPTDQISTGSGMMDSFKLLTGSTEGWFIMLMAFLFLLTLFGNMISWSLGVNNTA CYAAENGDMPKFFEKRSKKNDMPIGAALMNGIVASVVIVLAPILPNQDLFWAFFSLNVVL FLLSYIPVFPAFYKLRKIDPDTPRPFKVNGKPGFLKVLVVLPMIMIIISLIFTAVPLDFS PAALNEKLPITIGAIIFILFGEVIIYVKKIKKGTKENG >gi|284795438|gb|ADDQ01000111.1| GENE 89 92893 - 93810 688 305 aa, chain + ## HITS:1 COG:L136332 KEGG:ns NR:ns ## COG: L136332 COG2957 # Protein_GI_number: 15673679 # Func_class: E Amino acid transport and metabolism # Function: Peptidylarginine deiminase and related enzymes # Organism: Lactococcus lactis # 1 302 1 302 366 518 79.0 1e-147 MAKRIVGSTPKQDGFRMPGEFEPQEKVWMIWPERPDNWRDGGKPVQEAFTNVAKAISQFT PMNVVVSQQQFQNCRRQLPPEITVYEMSNNDAWVRDCGPSFVINDHGEIRGVDWTFNAWG GLVDGLYFPWDQDDLVAQKICEIEHVDSYRTDDFVLEGGSFHVDGQGTVLTTEMCLLSEG RNPQLSKEAIEQKLCDYLNVEKVLWLGDGIDPEETNGHVDDVACFIAPGEVACIYTEDQN SPFYEAAQDAYQRLLKMTDAKGRQLKVHKLCCPVKNVTIKGSFKIDFVEGTPCHEKTAIF VSHPI >gi|284795438|gb|ADDQ01000111.1| GENE 90 93768 - 93992 295 74 aa, chain + ## HITS:1 COG:L136332 KEGG:ns NR:ns ## COG: L136332 COG2957 # Protein_GI_number: 15673679 # Func_class: E Amino acid transport and metabolism # Function: Peptidylarginine deiminase and related enzymes # Organism: Lactococcus lactis # 1 73 292 364 366 144 90.0 5e-35 MPREDGDICIASYMNFLITNDGVIVPQYGDENDCLALEQVQTMFPDKKIVGVNTVEVVYG GGNIHCITQQEPKR >gi|284795438|gb|ADDQ01000111.1| GENE 91 94004 - 94933 1179 309 aa, chain + ## HITS:1 COG:yqeA KEGG:ns NR:ns ## COG: yqeA COG0549 # Protein_GI_number: 16130776 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Escherichia coli K12 # 3 309 4 310 310 296 52.0 4e-80 MSKIVIALGGNALGNSSKEQLAKAQTAAKSIVDLIEQGHQVVIAHGNGPQVGKIRLAFEE TSQSPEDVVPFPECTAMSQGYIGYHLQQAIDEELVARNLGEQPVVTLITQVVVDPKDPAF TKPTKPIGGYYDEETAKQLMAETGNVYQEDAGRGWRRVVPSPKPIDIYEKVSLRTLVDAE QIVIACGGGGVPIAYDGPVYHGVDAVIDKDFAAAKMAELIEADVFVVLTAVEHVFVNFGQ ANQQALTDVTVTAMQQYIEEDQFAPGSMLPKVEAAISFAESKPNRQAIIGLLELASEAIK GESGTRITQ >gi|284795438|gb|ADDQ01000111.1| GENE 92 95130 - 96716 1830 528 aa, chain + ## HITS:1 COG:lin0842 KEGG:ns NR:ns ## COG: lin0842 COG0154 # Protein_GI_number: 16799916 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases # Organism: Listeria innocua # 29 508 141 631 639 271 38.0 3e-72 MSKFLKVIGIIAVLLVIIGAAAYWFILKKFTPEAETPAMYNQERIVKTIEDQLKETNVQK ARTKAPFIIEKNITELQQAIADGALTYEELTAFYLDRILQFDQIDNGMNSISEINPQAIK EAKAFDQQASQTPKKPLYGIPVTLKENINTTNMISSAGAYALRTFKPKEDAEVVKKLTEA QALILGKVNLSELANYMSMKAPSGYSSKHGQTLNPYGPLKITPSGSSSGSGASVTMNIGA FSLGTETMGSIVSPASHQSVVGFKPTHSSVSGEGVLPLAPSLDTVGPIARSVVDAAQGYN AFKKDTVPSIDSTKFTKNNLQGQRIGLLEMPNAEEEFATAKKALQKAGAEVIPVTSDMEG IDGGKVISNEFKFALEEFAKRYDLPFKTLEELIAYNQQDKKVRAKYGQDLLEADVKKKQP DKEIIQTTIKKAQQTFDALLKKQQLDGYAFIDSEGTGLSAVAGYPELTVPLAKNSEGQPY GLTFTQTANKEQTLFEQAYSFEQSTKGRIVLSDNELLANSKKINRDEQ >gi|284795438|gb|ADDQ01000111.1| GENE 93 96909 - 97025 120 38 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIPAAEPFTTVVLQINVAKAEATAHIYASNTVIVHSFY >gi|284795438|gb|ADDQ01000111.1| GENE 94 97273 - 97971 654 232 aa, chain + ## HITS:1 COG:PM1838 KEGG:ns NR:ns ## COG: PM1838 COG3201 # Protein_GI_number: 15603703 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinamide mononucleotide transporter # Organism: Pasteurella multocida # 1 225 1 226 234 90 30.0 3e-18 MNKNFLVNDFKGWETRSYLFLALMVGVQLIAFAINPSNWITLVGGLAGIICVNLIAQGKV SNYIFGLISAVIIGYFGLVTRVYAEVLLQSFYIIMDITGLYAWLRASEDGSGQVTEVKVL KGIQWLYAFFTWLLIGVAAYILLGFVNDAQQTLDAITFSVSATGMLLMIKRYQSQFVFWL LGNIFSILLWFRAGTHAGGDYAIFVMYCMYTFNSIFGMFNWLKIKNKMEKNR >gi|284795438|gb|ADDQ01000111.1| GENE 95 97980 - 98624 878 214 aa, chain + ## HITS:1 COG:L93481 KEGG:ns NR:ns ## COG: L93481 COG1428 # Protein_GI_number: 15672477 # Func_class: F Nucleotide transport and metabolism # Function: Deoxynucleoside kinases # Organism: Lactococcus lactis # 1 213 1 213 217 293 71.0 2e-79 MAVIVLAGTIGAGKSSLTALIANRLGSEAFYESVDDNEVLPLFYAEPEKYAFLLQIYFLN KRFDSIKQALTHENNVLDRSIYEDSLLFHLNADLGRANETEVKVYDDLLQNMLQELPYAA HKKRPDLLVHIRISFPKMLERIKKRGRPYEQIETDPTLYDYYQMLNERYDQWYEDYDESP KIQIDGDKYDFVEDPEACQYVLALIEKKIEELER >gi|284795438|gb|ADDQ01000111.1| GENE 96 98974 - 99405 222 143 aa, chain + ## HITS:1 COG:no KEGG:EF0741 NR:ns ## KEGG: EF0741 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 143 1 143 143 246 98.0 1e-64 MSQIWFERILRWRKKAQRFLQGRYARFDELNRTLLLTSVVLALINIFTGYLWVRLLILIT VAYVYYRFFSKHIHPRLNENQRFILRKQRLMQKVHAFRKRHLTQKEYRYFKCPKCQQSLR APKGRGTIKVTCSNCQNQFIKKV >gi|284795438|gb|ADDQ01000111.1| GENE 97 99518 - 99904 616 128 aa, chain + ## HITS:1 COG:SP1558 KEGG:ns NR:ns ## COG: SP1558 COG4835 # Protein_GI_number: 15901401 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 122 5 128 128 92 44.0 1e-19 MEIKRQQEIVEAYHYDMRVPDSEVETDLRVSFSPIEVEEENYPENSSALVARLEFRIVFD EFVLSGAISQINHIIDRKIEKQEDISQEEVDELVRPLFSIVERLSYEVTEIALDRPGVQL NFQQSEEA >gi|284795438|gb|ADDQ01000111.1| GENE 98 99951 - 100286 483 111 aa, chain - ## HITS:1 COG:no KEGG:EF0743 NR:ns ## KEGG: EF0743 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 111 1 111 111 211 98.0 7e-54 MQKICWILSVNRDGATLFVGSPANAGPWLFSNKEQQNIKAFFQPTYEIDFISYDVLSEEV PEAAFILYNEMLAPYLPEKVTKVGQPIAYVDIATKNYEQFKKALVAKSSQE >gi|284795438|gb|ADDQ01000111.1| GENE 99 100584 - 101975 1877 463 aa, chain + ## HITS:1 COG:BS_yhcL KEGG:ns NR:ns ## COG: BS_yhcL COG1823 # Protein_GI_number: 16077978 # Func_class: R General function prediction only # Function: Predicted Na+/dicarboxylate symporter # Organism: Bacillus subtilis # 1 461 1 460 463 424 57.0 1e-118 MTTFITVLVILAFIAVLFGFYQMQKKHLKFSTRVFSALGVGIVLGAIIQFAFGTDSKITT QSMEWIGIVGNGYVAFLQMLVIPLVFVSIVGAFTKMKESNKLGKISFNVLATLLGTTAVA ALVGIGTTLAFGLQGAKFTQGAAETSRIAELATRQDAIQDLTIPQQIVSFIPKNVFADFA GTRPMSTIGVVIFAAFVGVAYLGVRRKAPKEAEFFANLIDSLYKITMRIVTLVLRLTPYG VLALMINVVATSDFVAIINLGKFVLASYVALIIVFAIHMLILITLKVNPVTYLKKVFPVL SFAFTSRSSAGALPLNIETQTKALGVDDATANFAGSFGLSIGQNGCAGVYPAMLATIVAP TVGIDVFSLQFILMLVAVVTISSFGVAGVGGGATFASLIVLGAMNLPVAIVGLVISVEPL IDMARTAVNVNDSMVAGVLTSARIHELDRDVLNDRDVVLDANI Prediction of potential genes in microbial genomes Time: Sun May 15 13:24:00 2011 Seq name: gi|284795437|gb|ADDQ01000112.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont249.3, whole genome shotgun sequence Length of sequence - 2654 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 24 - 83 4.4 1 1 Tu 1 1/0.000 + CDS 111 - 491 525 ## COG0346 Lactoylglutathione lyase and related lyases + Term 496 - 549 19.5 + Prom 526 - 585 7.1 2 2 Op 1 . + CDS 644 - 1810 983 ## COG1680 Beta-lactamase class C and other penicillin binding proteins + Prom 1824 - 1883 4.6 3 2 Op 2 . + CDS 1909 - 2619 748 ## COG4420 Predicted membrane protein Predicted protein(s) >gi|284795437|gb|ADDQ01000112.1| GENE 1 111 - 491 525 126 aa, chain + ## HITS:1 COG:SA1340 KEGG:ns NR:ns ## COG: SA1340 COG0346 # Protein_GI_number: 15927090 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Staphylococcus aureus N315 # 7 120 6 121 123 81 40.0 3e-16 MFSNQVKIMLYVNNVEESSQFWQTFGFVEKEREEVDGTLVVEIAPSESAEAIIVLYDLAF IQKHSPEVAGNTPSLMFASDDIIGLYKKMQEAGVTVGEMVQLPTGLVFNFADNDDNYFAV MGQESK >gi|284795437|gb|ADDQ01000112.1| GENE 2 644 - 1810 983 388 aa, chain + ## HITS:1 COG:BS_pbpX KEGG:ns NR:ns ## COG: BS_pbpX COG1680 # Protein_GI_number: 16078758 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Bacillus subtilis # 74 379 85 386 391 145 29.0 1e-34 MRKRHAKKRHGGVNWLFIVCLLVVIGGSGYLIKTFFFTRDSQVSQESKVVLEEDRRSDNY ANLTKEIVAPDSGELDQKIQETNYIGSALIIKDDQVLVNKGYGFANFEKQQANTPNTRFQ IGSIQKSFTATLILKAIEEGKLTLDTKLATFYPQIQGAEDITISDMLNMTSGLKLSAMPN NIVTDEEIIQFVKQNTIQVNKGKYNYSPVNFVLLAGMLEKMYQRTYQELFNNLYHKTAGL KNFGFYETLLEQPNNSTSYKWTEDNSYNQVLSIPAASFAHEFGTGNVDMTTGDLYWYLHQ LMSGHLVSTALLQKLWTSSQQSSYHGGIYVHDNYLRLHGVEAGQQALVLFSKDMKTGVIL LTNCVNPAKYKELIGSLFHDVTNLTVKF >gi|284795437|gb|ADDQ01000112.1| GENE 3 1909 - 2619 748 236 aa, chain + ## HITS:1 COG:mlr4962 KEGG:ns NR:ns ## COG: mlr4962 COG4420 # Protein_GI_number: 13474144 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Mesorhizobium loti # 32 225 92 285 307 162 44.0 4e-40 MKQSKNKQVVIGESTKKNIYLQDIEQETQAFILQNNPQLTAESMITLAELLNYRLDYMKQ LVANDSEKIQQLNELVVQHIKEDKLISNNMNEKMEKKLTFGQRAADTIAKFGGSWVFIGF FCFVLIACIVINSTTLLGQPFDKYPYILLNLALSCLAAIQAPIIMMSQNRQEARDREQAN NDYKINLKAEVEINLLHEKMDYIINNQLENLVKIQNIQIELLGELQEQLAATSEKE Prediction of potential genes in microbial genomes Time: Sun May 15 13:24:01 2011 Seq name: gi|284795436|gb|ADDQ01000113.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont252.1, whole genome shotgun sequence Length of sequence - 3536 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 264 - 323 10.1 1 1 Tu 1 . + CDS 480 - 3332 2796 ## EF3250 hypothetical protein + Term 3335 - 3392 14.7 Predicted protein(s) >gi|284795436|gb|ADDQ01000113.1| GENE 1 480 - 3332 2796 950 aa, chain + ## HITS:1 COG:no KEGG:EF3250 NR:ns ## KEGG: EF3250 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 306 950 1 645 645 1108 98.0 0 MDSVVGVTVLAETITEATEQGVATSQSSDEASQTTQTTEESQATVASEAKTVPPQETARI ASRAIGYSSVEGREIPFFFVEEDGTLFDPDRITMAVNLSSFSFYEEKLQRTPLEPTTVNG GKLLSIPTSPAFKYDTNNRDPSNIYGVSEVSFTIPKEYQSLDIRPSTFYTGDTTQYPVPT VFANVGGKVTNYVGANAETELELTNEKMPNKLTFGPKKTFKYMVATAPGGVTYALTYFYG DVGGPTSSHQRRGTAGPVYYYLTKRRVTEKFENPAGGAIPAPEGFTQDKKTIVTGEDFTF TQEGTLPERYTGSDGKTYLFKGWYKGNAKPSTLETTKTPSYAVTYDDNDDLHVVYEEAVM KTYTLPAREALFGYVDEQGNLINPAKFKLSATMGESDGATGEMTTFPTIDGIDMPASQLK KLAIPQKVYTRPDDGTIVTYGPQEVSVEIPKYYQTISIKPTTTYTGDKTKYPVPNEVRRG IENPDNIVSSLVGTTAYNLTQKSATRYTARRSYWTWDTTKTLYSMSIYSGTAGGNYNLST PDGTIYYYLENRRVTEHFVDESGAKITPPTGFTQGNQLVMDSENYVYTAAKALPKIYQAG EKTYIFQGWFKGKTKPATLKTTTTPSFTPTFNDEDDMTAVYQEAIPTAELTLTGAVDIIE NGATMDYWEALLKNTGEAPLTTIKIKPTATWAAGIGAPNTIFVQGTGQNTKAFPVTKEQW TTGAGVSITLDQPLPAGGQLKMNILGTTVTGQPGQVLTADVEVTGNFGSLTAKDTVRIKD LDQEITSPDGDGFISTPTFDFGKLAISGSKQQYGLKKAADYYGNGTRNPYLRLNTSQANW SLTAQLSQPKSATDSLPTTTRLLLGTAAAASFTDYNQPTETRTPLGKTSTVTLTADNTAT AVVANQQFTGSDVYQLDFTFANIKLEVPANQGMAGQQYQAAVTWNLVTGP Prediction of potential genes in microbial genomes Time: Sun May 15 13:24:12 2011 Seq name: gi|284795435|gb|ADDQ01000114.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont255.1, whole genome shotgun sequence Length of sequence - 576 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 575 413 ## EF2248 hypothetical protein Predicted protein(s) >gi|284795435|gb|ADDQ01000114.1| GENE 1 2 - 575 413 191 aa, chain + ## HITS:1 COG:no KEGG:EF2248 NR:ns ## KEGG: EF2248 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 3 191 396 582 1004 169 56.0 3e-41 SSLSSLDVSNFVTGAVTSMINMFNGCSSLSSLDVSKFNTSAVTSMESMFAGCSGLTRLDV SKFVTKKVLSTSNMFADCSGLTRLNVSNFDTSAVTQMNGMFTGCSGLTSLNVSNFDTSAV LNMSAMFANCSGLTSLNVSNFDTSAVTNMHSMFKGCSGLTSLNVSSVSFKTDKVTEMTDM FAGCSGLTSLD Prediction of potential genes in microbial genomes Time: Sun May 15 13:24:17 2011 Seq name: gi|284795434|gb|ADDQ01000115.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont260.1, whole genome shotgun sequence Length of sequence - 8395 bp Number of predicted genes - 12, with homology - 12 Number of transcription units - 2, operones - 2 average op.length - 6.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 1187 958 ## EFA0031 hypothetical protein 2 1 Op 2 . - CDS 1205 - 1540 365 ## EFA0032 putative lipoprotein 3 1 Op 3 . - CDS 1557 - 4049 1847 ## EF0500 hypothetical protein - Prom 4074 - 4133 3.9 - Term 4092 - 4126 4.5 4 2 Op 1 . - CDS 4154 - 4612 442 ## COG0629 Single-stranded DNA-binding protein - Prom 4639 - 4698 2.7 5 2 Op 2 . - CDS 4702 - 5178 259 ## EF0498 hypothetical protein 6 2 Op 3 . - CDS 5216 - 5605 195 ## EF0497 hypothetical protein 7 2 Op 4 . - CDS 5605 - 5865 283 ## EFA0036 hypothetical protein 8 2 Op 5 . - CDS 5870 - 6904 945 ## EFA0037 hypothetical protein 9 2 Op 6 . - CDS 6897 - 7211 340 ## EF0494 hypothetical protein 10 2 Op 7 . - CDS 7211 - 7543 134 ## EF0493 hypothetical protein - Term 7544 - 7577 -1.0 11 2 Op 8 . - CDS 7611 - 8228 561 ## EFA0040 hypothetical protein 12 2 Op 9 . - CDS 8231 - 8338 74 ## EFA0041 hypothetical protein Predicted protein(s) >gi|284795434|gb|ADDQ01000115.1| GENE 1 2 - 1187 958 395 aa, chain - ## HITS:1 COG:no KEGG:EFA0031 NR:ns ## KEGG: EFA0031 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 395 1 395 781 725 99.0 0 MNKKSLVKAVLLFLVGCFFVFTQTTAVNAEPKPDENKVIVTEPTTNVDTIYDTYKDNAFE LMTKEKKQDSWTGVEEAITNASATIKTFVWSMVKGLGAFNAVMVKTLFSMDIITAIKQPI MNLTSSIATNMLGIAGTIGIAFVFVILGVKFIGQQRYKRFFGIFLMTILIFTGLSVLKDA NTSNSLFDMMFSVDKEVETAFVNINPVLGDVSVPMTEKGKDKNGNEVEQKLSADQRAKSA GNLIASRVFYTNVYEPYLLMNYGTSDVNKIRKKTVKYKDKEYDRINLLLDNDMNSEENDK LMEEVVNYESKDLKNRSIMYYNNWTNTFYGLFYLVVNFIQTVVYFLLSFLRLIIAVIQLF LLPLLPLLLFAGLFLTETNVFANYFKTFGMTIFMK >gi|284795434|gb|ADDQ01000115.1| GENE 2 1205 - 1540 365 111 aa, chain - ## HITS:1 COG:no KEGG:EFA0032 NR:ns ## KEGG: EFA0032 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 111 3 113 113 196 100.0 3e-49 MKKVLPFIALVGLLLLSGCGTDMKKILTADGGKWELENKSPTTTYTFFDDETFSRYNSKI SDSGTYSYDENNKKLTLDIKNKEQLIMENVEYKDGKLKGEIGGVEGTLIKK >gi|284795434|gb|ADDQ01000115.1| GENE 3 1557 - 4049 1847 830 aa, chain - ## HITS:1 COG:no KEGG:EF0500 NR:ns ## KEGG: EF0500 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 830 1 830 830 1647 99.0 0 MPLKSKEPRLDFPIEAITNNFLFTTSNDVWVGYKLAHQVFPLNNLDFFKEYIEDGKGVFE QDTFDYHFMNIPEYFDLDEQIEATIDNLVKGSFADLGETYFRQAGDILKDEVQMNKYSTY LFIRFTAPIQVANPMEYIELFKEVGRKAINALTGVHVPVSQLYRAYQGLENKIYKDLSNF KNVERMDPRTIGRLFYYFFHRANTRLPERTLLPEEMTEGIIENNTGYMTIEQLDKTHYLA FLPLISLPTSMFGSAIIQNLQDSLSTTIETHVKVTFRHPDKDKRDVHKRRKRIYEQDKEQ TQVDGILDEDEVILFGEERLHELSKKIRSKERRLCRMTTTFVLSADSKQALEEKIKELEF VLDGTDYKLYRPLVDQLTLFNQCLIGAKSQFKSYEHVVSTGYVADLGMDLEKEIGNRYGM PLGRVITAKKFKSVQQALSLSSKIVWFFPNLTKKAIEGAQYTNGNTLIIGPPGQGKSVLV KYIFLWLTFLGQKILYIDPKNETVLFFKRALDKFGHIPEFKALYQRINFVSLSSEERYRG MLDPLLFLPREEAIQTARNVLENFGEVTTDSHTASDKKTLILDSVNAVMKGKGKKHLTKV IEVIREKDPKLANLISGHNVGLGKILLGNDYSEPIRFENQINVLGTQGLKIPTQAEIDSG RLNNEQIAGMSIMEVIMKMTTIFSTDKTEDAAIIFDEAKGFEDTAQGRFLIEGSLRQGRA NMTDIYLVTQAFMDYDKEDKKELLSYKFAFRPNQKEAQKKVLEFFGMDTNPANLQLINEL KSGTCLFQDHRGRSQPIAIDVLFDSWLMAVSSTNKEDEATQMALAMEQGS >gi|284795434|gb|ADDQ01000115.1| GENE 4 4154 - 4612 442 152 aa, chain - ## HITS:1 COG:L0300 KEGG:ns NR:ns ## COG: L0300 COG0629 # Protein_GI_number: 15673001 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Lactococcus lactis # 1 152 1 150 150 167 59.0 8e-42 MINNVTLVGRLTKDPDLRYTQSGTAVGQFTLAINRNFTNANNEREADFINCVIWRKAAES LANYATKGTLIGLTGRIQTRNYENQQGQRIYVTEVVTESFQLLESREVNEQRKEQATGKA TFDKQSMDKPDPLDPFSPENSIVDISDNDLPF >gi|284795434|gb|ADDQ01000115.1| GENE 5 4702 - 5178 259 158 aa, chain - ## HITS:1 COG:no KEGG:EF0498 NR:ns ## KEGG: EF0498 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 158 3 160 160 271 98.0 5e-72 MDKRIEAVTKFLESLGTVEDYTEDVAVKYRNLILKSYELYENKYNDTVDDSLCIEVWSNG TYVVTNEDLSFDCESEEDLQKLKELFVNTSFYITINELNKVGHKATLSVKAKAKNLRELG QLIKEYRSCNCKYLKDKVTEIIGDDGRVYLDRISERMD >gi|284795434|gb|ADDQ01000115.1| GENE 6 5216 - 5605 195 129 aa, chain - ## HITS:1 COG:no KEGG:EF0497 NR:ns ## KEGG: EF0497 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 129 2 130 130 213 100.0 2e-54 MEYNYTREFKQPHKIYSIKGVALPFAPNGIRLEQIFVGIGILILLLIFAIISFVAKINFF TTIIANFWLILIVGVGVLVWTLFSLKWDNKSFLDYLIGRGNFLYQKKKRYEHGLLVQFHK EKVQYKVRK >gi|284795434|gb|ADDQ01000115.1| GENE 7 5605 - 5865 283 86 aa, chain - ## HITS:1 COG:no KEGG:EFA0036 NR:ns ## KEGG: EFA0036 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 86 6 91 91 122 100.0 3e-27 MFDLSGLANNISSQVIILLVILGLVSLVVAVATQGAARGIATVCLILILIALVLVLKDAE KIGTWLKDLIFKPNAGFIFPIKGWRF >gi|284795434|gb|ADDQ01000115.1| GENE 8 5870 - 6904 945 344 aa, chain - ## HITS:1 COG:no KEGG:EFA0037 NR:ns ## KEGG: EFA0037 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 344 1 344 344 588 99.0 1e-166 MSNKKAVFNPQAGKQAQKEKVRKETRVSSLVQIIRAIFRKKEKEPGNSRTIRFSPRSAKS IYSMVFFLLFFLISLFLLMSFGRLNTLTRLAMQKQVNREEIIESVNKGVAASDQLKYDGM KLVDRLFTVSSKLEGKEYWEAQITPYLAAGLRAEDLGLDKTNDDRVARNVRFIRLETVDY KESLYSLYYDVRFTEGKEWRQVQVILPISYAENELKLLDRPTLMNLAKTSESNKVVYDEQ RFIPKGKEVNEEETKKLTEFTNRFFELYVKNDEKLGLIANVKGLEHATLEKVDITSLRET GQGVYDVRGTYQFSYEGKSPLTSNFSLQIEATKDSYFIKKMNGV >gi|284795434|gb|ADDQ01000115.1| GENE 9 6897 - 7211 340 104 aa, chain - ## HITS:1 COG:no KEGG:EF0494 NR:ns ## KEGG: EF0494 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 104 1 104 104 181 99.0 1e-44 MHENHVNEKETAVENTERIAKNYAYERPAIQTALFILWRLHNKQYQTGARIFYDELEKAT KTSKTAYKEALAFLEGAGMVVNEVVVESKVPQSLIQRYGILKDE >gi|284795434|gb|ADDQ01000115.1| GENE 10 7211 - 7543 134 110 aa, chain - ## HITS:1 COG:no KEGG:EF0493 NR:ns ## KEGG: EF0493 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 110 13 122 122 198 99.0 4e-50 MVKQNEKAMLNQEKERAAVVLADNETRVLFFYKDTCADCQKVYPTVYEEDQGENNIVFIN LNQPKNRHYIKTYTLEKVPTFVTSKRRYVGTDTRKIQQLIAENNDERSED >gi|284795434|gb|ADDQ01000115.1| GENE 11 7611 - 8228 561 205 aa, chain - ## HITS:1 COG:no KEGG:EFA0040 NR:ns ## KEGG: EFA0040 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 205 1 205 205 287 97.0 1e-76 MRERLKQAQPIVIVLLLVLLTTLGGGYFNEKKENAQIKNQKEKEQQVLKKTLEEKNGQLN DLSRKIEQLLDEKEDPVNEPLTKAVNGLFSLVFDYDSSNKEQTVAKRKEKATVYATEQGL SGIFPRDADKVIPSVVTVSQLDKAPEIYRTTQKDTGKEKTALVRLEYSVRIAGSQAQRGN FIYKVTFNEESKKFTTIENLGEENQ >gi|284795434|gb|ADDQ01000115.1| GENE 12 8231 - 8338 74 35 aa, chain - ## HITS:1 COG:no KEGG:EFA0041 NR:ns ## KEGG: EFA0041 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 35 389 423 423 69 97.0 3e-11 MSEANVINQGSGTRSWRVLDRATVEQIDFIQGKGA Prediction of potential genes in microbial genomes Time: Sun May 15 13:24:53 2011 Seq name: gi|284795433|gb|ADDQ01000116.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont265.1, whole genome shotgun sequence Length of sequence - 2498 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 1, operones - 1 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 367 - 426 6.4 1 1 Op 1 . + CDS 469 - 1065 423 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs 2 1 Op 2 . + CDS 1082 - 1369 303 ## EFA0074 hypothetical protein 3 1 Op 3 . + CDS 1363 - 1587 259 ## EF_C0011 UvrC family transcriptional regulator 4 1 Op 4 . + CDS 1656 - 1856 212 ## EFA0075 hypothetical protein 5 1 Op 5 . + CDS 1877 - 2179 288 ## EFA0076 hypothetical protein + Term 2191 - 2226 3.5 Predicted protein(s) >gi|284795433|gb|ADDQ01000116.1| GENE 1 469 - 1065 423 198 aa, chain + ## HITS:1 COG:PSLT045 KEGG:ns NR:ns ## COG: PSLT045 COG1961 # Protein_GI_number: 17233496 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Salmonella typhimurium LT2 # 1 184 1 177 186 108 38.0 6e-24 MAIYGYSRVSTSNQDYKTQIRKLEEAGAEKIFSEKYTGTKKEGRKELEELLSIVKAGDKV LVTKIDRLARSIVDLNSIISALNHKGVTISFLDDHLTFEPDKKDSMQTLMMNMLGSFAQF ERDLIVTRTQEGKQWHRANNKNYREGRPKRVLNDKYKHALELMETNSMREVERKTGISLS TLKRIKKQAKEEQLLNEK >gi|284795433|gb|ADDQ01000116.1| GENE 2 1082 - 1369 303 95 aa, chain + ## HITS:1 COG:no KEGG:EFA0074 NR:ns ## KEGG: EFA0074 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 95 1 95 95 140 90.0 1e-32 MENREKIIQLLKNPLVTGYGIEMMSNGRLYSANFQRYRNRMKKEENPMIIFDTMTEKVEK VFLELAEEVIRTNPKTKQEFKDMIKEYSYKEDNKW >gi|284795433|gb|ADDQ01000116.1| GENE 3 1363 - 1587 259 74 aa, chain + ## HITS:1 COG:no KEGG:EF_C0011 NR:ns ## KEGG: EF_C0011 # Name: not_defined # Def: UvrC family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 64 1 64 69 62 43.0 3e-09 MVVRKTYDHWGIEISTWNKSNIVTFIDCDCGQLAKRELGKYNQYKCDSCNKEYKLYQGNY IAIDEKINEVAQND >gi|284795433|gb|ADDQ01000116.1| GENE 4 1656 - 1856 212 66 aa, chain + ## HITS:1 COG:no KEGG:EFA0075 NR:ns ## KEGG: EFA0075 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 66 14 79 82 116 100.0 3e-25 MNFGYLNFGTKDAVLVIAIFIILILTVLFRWSALEFVFSSGAVGIAFFAGNMKQDKRIAD RQNKKS >gi|284795433|gb|ADDQ01000116.1| GENE 5 1877 - 2179 288 100 aa, chain + ## HITS:1 COG:no KEGG:EFA0076 NR:ns ## KEGG: EFA0076 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 100 1 100 100 172 92.0 5e-42 MPVNKNGLPFYLDRKLDVIRFGVDPYNHVKEQQLFNSPVKTEKPNKKERFIEKESESLTQ SGYKIVVDTVTGVNYLESHRGGITPLLDETGKVCIDKISK Prediction of potential genes in microbial genomes Time: Sun May 15 13:25:00 2011 Seq name: gi|284795432|gb|ADDQ01000117.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont271.1, whole genome shotgun sequence Length of sequence - 575 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 575 632 ## EF_B0011 aggregation substance PrgB Predicted protein(s) >gi|284795432|gb|ADDQ01000117.1| GENE 1 2 - 575 632 191 aa, chain - ## HITS:1 COG:no KEGG:EF_B0011 NR:ns ## KEGG: EF_B0011 # Name: prgB # Def: aggregation substance PrgB # Organism: E.faecalis # Pathway: not_defined # 1 191 866 1056 1305 354 99.0 1e-96 VNEGSNKVGKQAWSVYLEVERIKTGDVENTQTENYNKELVRSNTVVTHTPDDPKPTKAVH NKKGEDINHGKVARGDVLSYEMTWDLKGYDKDFAFDTVDLATGVSFFDDYDETKVTPIKD LLRVKDSKGVDITNQFTISWDDAKGTVTISAKDPQAFILAYGGQELRVTLPTKVKADVSG DVYNSAEQNTF Prediction of potential genes in microbial genomes Time: Sun May 15 13:25:04 2011 Seq name: gi|284795431|gb|ADDQ01000118.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont276.1, whole genome shotgun sequence Length of sequence - 597 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 69 - 596 629 ## PROTEIN SUPPORTED gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 Predicted protein(s) >gi|284795431|gb|ADDQ01000118.1| GENE 1 69 - 596 629 175 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 [Bacillus selenitireducens MLS10] # 5 174 157 326 336 246 71 2e-66 RPPADTFRAGAIDQLVVWGERAGVEVVRGNAGGDPAAVVFDAVERAKTEQADVLLVDTAG RLQNKVNLMKELEKIKRVIQREIPDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVL TKLDGTAKGGIVIAIRNELHLPVKLVGLGEGINDLEPFNANDFAMGLFKGLLKDV Prediction of potential genes in microbial genomes Time: Sun May 15 13:25:20 2011 Seq name: gi|284795430|gb|ADDQ01000119.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont276.2, whole genome shotgun sequence Length of sequence - 47075 bp Number of predicted genes - 47, with homology - 46 Number of transcription units - 16, operones - 9 average op.length - 4.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 2/0.750 - CDS 3 - 812 376 ## PROTEIN SUPPORTED gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 2 1 Op 2 1/0.750 - CDS 815 - 1642 1122 ## COG0561 Predicted hydrolases of the HAD superfamily 3 1 Op 3 6/0.000 - CDS 1667 - 5245 4436 ## COG1196 Chromosome segregation ATPases 4 1 Op 4 . - CDS 5266 - 5958 894 ## COG0571 dsRNA-specific ribonuclease - Prom 5989 - 6048 7.3 5 2 Op 1 . - CDS 6122 - 6208 57 ## 6 2 Op 2 . - CDS 6213 - 6731 415 ## EF3099 transporter accessory protein, putative - Prom 6764 - 6823 5.0 - Term 7030 - 7065 -1.0 7 3 Op 1 . - CDS 7084 - 7350 258 ## EF3102 hypothetical protein 8 3 Op 2 . - CDS 7337 - 8695 504 ## EF3103 hypothetical protein 9 3 Op 3 . - CDS 8640 - 9365 481 ## COG1131 ABC-type multidrug transport system, ATPase component - Term 9369 - 9403 3.7 10 3 Op 4 . - CDS 9419 - 9634 195 ## EF3105 hypothetical protein - Prom 9767 - 9826 16.1 - Term 9964 - 10011 10.4 11 4 Op 1 5/0.250 - CDS 10017 - 11798 2438 ## COG0747 ABC-type dipeptide transport system, periplasmic component 12 4 Op 2 49/0.000 - CDS 11827 - 12750 1038 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 13 4 Op 3 6/0.000 - CDS 12778 - 13740 1112 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 14 4 Op 4 44/0.000 - CDS 13740 - 14684 1019 ## COG4608 ABC-type oligopeptide transport system, ATPase component 15 4 Op 5 . - CDS 14684 - 15691 602 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 - Prom 15740 - 15799 8.5 - Term 15933 - 15971 5.0 16 5 Tu 1 3/0.250 - CDS 15988 - 16227 445 ## COG0236 Acyl carrier protein - Prom 16282 - 16341 4.0 17 6 Tu 1 . - CDS 16364 - 17365 1407 ## COG0416 Fatty acid/phospholipid biosynthesis enzyme - Prom 17393 - 17452 6.4 18 7 Tu 1 . - CDS 17468 - 19504 2012 ## COG1200 RecG-like helicase - Prom 19548 - 19607 4.1 - Term 19542 - 19591 15.6 19 8 Op 1 9/0.000 - CDS 19620 - 21296 2164 ## COG1461 Predicted kinase related to dihydroxyacetone kinase 20 8 Op 2 . - CDS 21379 - 21741 584 ## COG1302 Uncharacterized protein conserved in bacteria - Prom 21785 - 21844 6.6 + Prom 21749 - 21808 7.1 21 9 Tu 1 . + CDS 22015 - 22203 318 ## PROTEIN SUPPORTED gi|29377572|ref|NP_816726.1| 50S ribosomal protein L28 + Term 22217 - 22258 1.3 - Term 22251 - 22302 17.0 22 10 Op 1 6/0.000 - CDS 22306 - 22950 706 ## COG1564 Thiamine pyrophosphokinase 23 10 Op 2 10/0.000 - CDS 22947 - 23600 936 ## COG0036 Pentose-5-phosphate-3-epimerase 24 10 Op 3 7/0.000 - CDS 23624 - 24517 902 ## COG1162 Predicted GTPases - Prom 24700 - 24759 4.1 - Term 24688 - 24727 -0.4 25 10 Op 4 17/0.000 - CDS 24766 - 26922 2346 ## COG0515 Serine/threonine protein kinase 26 10 Op 5 3/0.250 - CDS 26919 - 27668 774 ## COG0631 Serine/threonine protein phosphatase 27 10 Op 6 20/0.000 - CDS 27670 - 29049 1372 ## COG0144 tRNA and rRNA cytosine-C5-methylases 28 10 Op 7 26/0.000 - CDS 29055 - 29996 1274 ## COG0223 Methionyl-tRNA formyltransferase 29 10 Op 8 4/0.250 - CDS 29989 - 30483 675 ## COG0242 N-formylmethionyl-tRNA deformylase 30 10 Op 9 3/0.250 - CDS 30510 - 32942 2428 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase - Prom 32972 - 33031 5.2 - Term 33028 - 33075 8.3 31 11 Op 1 25/0.000 - CDS 33097 - 33399 475 ## COG1758 DNA-directed RNA polymerase, subunit K/omega 32 11 Op 2 . - CDS 33404 - 34018 766 ## COG0194 Guanylate kinase - Prom 34053 - 34112 5.4 + Prom 34105 - 34164 5.0 33 12 Tu 1 . + CDS 34241 - 35722 1516 ## COG1686 D-alanyl-D-alanine carboxypeptidase + Term 35733 - 35774 10.1 - Term 35719 - 35761 7.8 34 13 Op 1 . - CDS 35766 - 36071 461 ## EF3130 hypothetical protein 35 13 Op 2 . - CDS 36127 - 37011 1109 ## COG1561 Uncharacterized stress-induced protein 36 13 Op 3 . - CDS 37028 - 37246 400 ## COG4443 Uncharacterized protein conserved in bacteria - Prom 37361 - 37420 5.0 - Term 37361 - 37418 1.5 37 14 Tu 1 . - CDS 37422 - 37892 586 ## COG4405 Uncharacterized protein conserved in bacteria - Prom 37989 - 38048 6.7 - Term 38017 - 38054 3.1 38 15 Op 1 . - CDS 38061 - 38714 774 ## COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase 39 15 Op 2 . - CDS 38719 - 39792 1148 ## COG1312 D-mannonate dehydratase 40 15 Op 3 9/0.000 - CDS 39816 - 40268 733 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 41 15 Op 4 1/0.750 - CDS 40346 - 40852 612 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 42 15 Op 5 13/0.000 - CDS 40874 - 41746 1246 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 43 15 Op 6 . - CDS 41767 - 42603 760 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 44 15 Op 7 . - CDS 42616 - 43722 1086 ## COG0371 Glycerol dehydrogenase and related enzymes 45 15 Op 8 . - CDS 43737 - 44738 887 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases 46 15 Op 9 . - CDS 44751 - 45650 891 ## COG1023 Predicted 6-phosphogluconate dehydrogenase - Prom 45696 - 45755 13.8 47 16 Tu 1 . + CDS 46060 - 46947 726 ## COG1737 Transcriptional regulators Predicted protein(s) >gi|284795430|gb|ADDQ01000119.1| GENE 1 3 - 812 376 270 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 [Bacillus selenitireducens MLS10] # 127 270 13 155 336 149 51 3e-35 MGFFDKIKKAFSAEKKEEEKQEIIEETVDETPSDESAPAESKETAAEEAQTTPETAAEEV AETADLTDNAEMEKLADVEEALEEEPEEILTEETQEVVVEAPEEESSVVTPLAEPTDTQV SEEIEESKEEQVQEKYEKGLEKTRKTFGQRLNELFANFRSVDEDFFEELEETLIGADVGF DTSLKITEALRQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINLQPNGLTVILF VGVNGVGKTTSIGKLAHQYKLEGKKVLMAA >gi|284795430|gb|ADDQ01000119.1| GENE 2 815 - 1642 1122 275 aa, chain - ## HITS:1 COG:L22687 KEGG:ns NR:ns ## COG: L22687 COG0561 # Protein_GI_number: 15672793 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Lactococcus lactis # 2 268 5 269 269 247 51.0 2e-65 MIKLVAIDLDGTLLNSQKEISLRNKQALMAAKQAGVKVVICTGRPLAAIGPYLEELGLQD EGDYSITFNGGLVQKNDTGAIIEKTLMPLEAIHELYQLATTLNMPFDVLSDEVVMQLPSA PNYPSIYSSLNKLLTFESYKLEELTPNRIYNKVVVAIDEAYLNERIKEIPASFYERFEII KTRNNLLEFMPKGITKAYGISLLAKDLGIRAEEIMTLGDEENDLPMIEYAGLGVAMANAI PLVKEAADVVTDTNDQDGVAKAVEKYILTPLEGGQ >gi|284795430|gb|ADDQ01000119.1| GENE 3 1667 - 5245 4436 1192 aa, chain - ## HITS:1 COG:lin1918 KEGG:ns NR:ns ## COG: lin1918 COG1196 # Protein_GI_number: 16800984 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Chromosome segregation ATPases # Organism: Listeria innocua # 1 1184 1 1183 1186 874 47.0 0 MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLKYKQRKKKAEQK LFETEDNLSRVQDIIYELEDQLVPLAAQADAAKKYLALKEELTEIDVNLTVTEIQEAKAI WETKTQELTAIEEKLAGASKQVHDLEGKLVRLRSKRNRLDEQIETEQQQLLQVTEALKQA EGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREELQTLETAIAEKTAQRQTLKEAL ALATKDVEKYSKSSKELMEELRSQYVEVMQEQANTANDLKYLERQYQQETAKNQQSLAKH EALEEQMVEALAMKETLEKEQKVAKQGLQEQLEEYTALKATLEAKRERLAQRQNDMYQAM NQVQQAKARQKSLQEIQENYAGFYQGVKAVLRHKNQLTGIVGAVAELIEVPKEYTLAIET ALGGAAQHIVVENEKDGRAGITFLKQQHSGRATFLPLTTIKPRSVSAMVQNRLAGAPGFV GIASELVRYPEQVQTVIQNLLGVTILAADLTSANQLAKLVNYQYRVVSLEGDVMNPGGSM TGGANKRGNQGSLFSQAQELQTITEQMTQLETQLRSVEQEVQALSQEVKTATERAEMLRS AGEQNRLKQQEIDNKLANQTETITRLTKEKRLFEYESRELHQFLTEYQTKKATLTEQQAN LMATKERLDAEMKQVEQEASQMETFKAQAQERLTTVQAEQAVAAEQCAHFARQKQDKQEQ LDELLIRETAIRQQLQQLSSHSSDHQLTEEGLAAQVAQLAEKQTALQTSLQTARSQRQAL QEEVDELDTKLAEENKRQQQYLADKTQIEVLKNRAEMQLDSSLSYLQEEYSLTFEAAYEA YFPIDDLAQAQQTVKRLKQEIERLGPVNLSAIEQFEQVDERHQFLVSQRDDLLNAKEQLF ETMDEMDQEVKERFKEVFEAIRGQFKVVFPNMFGGGRAELVLTNPEDLLNTGIEIEAQPP GKKLQHLSLLSGGERALTAIALLFSIIRVRPVPFCILDEVEAALDEANVARFGHYLSEFE DGTQFIVVTHRKGTMEAADVLYGVTMQESGVSKIVSVRLEEVKEGGAIEKSN >gi|284795430|gb|ADDQ01000119.1| GENE 4 5266 - 5958 894 230 aa, chain - ## HITS:1 COG:lin1919 KEGG:ns NR:ns ## COG: lin1919 COG0571 # Protein_GI_number: 16800985 # Func_class: K Transcription # Function: dsRNA-specific ribonuclease # Organism: Listeria innocua # 8 228 6 226 229 257 58.0 1e-68 MDNQLTTELKERYGIVFHDVNLLEQAFTHSSYVNEHRYLKLSDNERLEFLGDAVLELIVS QYLYLKFPELPEGKLTKMRAAIVREDSLAKFAKECHFDNYILLGKGEEASGGRTRASLLC DLFEAFLGALYLDQKVGAAKKFIEDVIFPKIDAGAFSHEMDHKTQLQEVLQRKGDVSIEY RLIKEEGPAHDRTFFTEVYMNGELIGLGQGKSKKLAEQDAAERALKSIPQ >gi|284795430|gb|ADDQ01000119.1| GENE 5 6122 - 6208 57 28 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLFLLSLAGTFIQKIPRKRCYVFSFFMG >gi|284795430|gb|ADDQ01000119.1| GENE 6 6213 - 6731 415 172 aa, chain - ## HITS:1 COG:no KEGG:EF3099 NR:ns ## KEGG: EF3099 # Name: not_defined # Def: transporter accessory protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 172 1 172 172 323 100.0 1e-87 MKKRKVFIIFLVSLIIFVFGYYLAFNQNKYVSYNDETKQFVHTDTSKIMENLVNRQQGIY YFGFPTCPWCLELLPILDKELEKESMNAYAVNTRGDDYTENDDELLQKFYQKYTGDESLS VPFIVAINNKKEVQVHIGTVKNHDATKTKLKRRQKEELSQSLNEMLIFSESE >gi|284795430|gb|ADDQ01000119.1| GENE 7 7084 - 7350 258 88 aa, chain - ## HITS:1 COG:no KEGG:EF3102 NR:ns ## KEGG: EF3102 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 88 1 88 88 100 100.0 1e-20 MKKNSKYLGSITVIYLLVLVIETLWELFHTSRTESTKVTTLLGITIDNRISKHEISTTFG LTIKVLVLYLLLLLVVYILTGLFGKKKI >gi|284795430|gb|ADDQ01000119.1| GENE 8 7337 - 8695 504 452 aa, chain - ## HITS:1 COG:no KEGG:EF3103 NR:ns ## KEGG: EF3103 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 56 452 1 397 397 563 99.0 1e-159 MKKLNTSKDIILLIELFIDNALRGLLKHSILSKKSTRIVIGVCVFFIYFAYFFYNMSELA RIVPDSEKISHILIEQGRKITFYSYFSNTFVLGIIAYILVDNTVALDKNSLFFVKTLPFR KKDISLSFMLFKFVIMILLYELVMIISTPAIKLVTTVPIEYVIFFIVQHLFYLVVIGVIE FIHCLFAFFLKRRVKQINSLKVIGDSLLMIFATFYFFDFRYGLELFLANQLWSISYMIPI TFFLIVVCLMLISIGLLRLISILENQMSQHSKYIYIPFLNKVIFRYKANWYFISFTTVVM LVIFFQSGLRTMLFILTTVMAFSGVLLLSYGDITADFRKQYDLLRIKIRNEWLSQLLLVI MLAMPLLLLCFWGFGELAQLITALSLSLVAIILGYVFPKSQGSLNETTSLLLLFIVFVLV SLLTNRSFGWLILIVLVLLHLLVIKKVRNEKE >gi|284795430|gb|ADDQ01000119.1| GENE 9 8640 - 9365 481 241 aa, chain - ## HITS:1 COG:AF0393 KEGG:ns NR:ns ## COG: AF0393 COG1131 # Protein_GI_number: 11498005 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Archaeoglobus fulgidus # 1 234 1 231 241 98 27.0 1e-20 MIRIENLTKKFDRKVLDNITISLPKNRVSVIVGINGSGKTTLLDCIVGLKDATSGKVFIE SYSNDSEKFKECIFYIPSEFYLPNYMTGKEYLNFVLSRYRCSDTERIDDFLELFDLKFAG TNLIESYSFGMKKKIQIVAAALANTDYILGDEIFNGLDFETTLLTLELFENLSREVGIVI ISHNKLIIERFSENILLMSNGNLTPFLGASENLEKEVISTEKIHEKIKYIKGYHPINRVI Y >gi|284795430|gb|ADDQ01000119.1| GENE 10 9419 - 9634 195 71 aa, chain - ## HITS:1 COG:no KEGG:EF3105 NR:ns ## KEGG: EF3105 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 71 1 71 71 130 100.0 2e-29 MPLYMENYLLALQSKYSQEITVKWVWAVVILLSVIGCIGYAVYCSWVGGTFAGSIKIGVP DLVHVTFNCKR >gi|284795430|gb|ADDQ01000119.1| GENE 11 10017 - 11798 2438 593 aa, chain - ## HITS:1 COG:BH3636 KEGG:ns NR:ns ## COG: BH3636 COG0747 # Protein_GI_number: 15616198 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Bacillus halodurans # 45 575 64 588 610 498 47.0 1e-140 MNKKRILGAITLASVLVFGLAACGGGNKGGGNKATETEDISKMPIAVKNDKKAIDGGTLD VAVVMDTQFQGLFQQEFYQDNYDAQYMLPTVQPLFNNDADFKIVDGGPADLKLDEDANTA TIKLRDNLKWSDGKDVTADDVIFSYEVIGHKDYTGIRYDDNFTNIVGMEDYHDGKSPTIS GIEKVNDKEVKITYKEVHPGMQQLGGGVWGSVLPKHAFEGIAVKDMESSDAVRKNPVTIG PYYMSNIVTGESVEYLPNEYYYGGKPKLDKLVFKSVPSASIVEAMKAKQYDIALSMPTDT YPTYKDTEGYQILGRPEQAYTYIGFKMGTFDKETNTVKYNPKAKMADKSLRQAMGYAIDN DAVGQKFYNGLRTGATTLIPPVFKSLHDSEAKGYTLDLDKAKKLLDDAGYKDVDGDGIRE DKEGKPLEIKFASMSGGETAQPLADYYVQQWKEIGLNVTYTTGRLIDFQAFYDKLKNDDP EVDIYQGAWGTGSDPSPTGLYGPNSAFNYTRFESEENTKLLDAIDSKASFDEEKRKKAFY DWQEYAIDEAFVIPTLYRNEVLPVNDRVVDFTWAVDTKDNPWATVGVTADSRK >gi|284795430|gb|ADDQ01000119.1| GENE 12 11827 - 12750 1038 307 aa, chain - ## HITS:1 COG:BH3637 KEGG:ns NR:ns ## COG: BH3637 COG1173 # Protein_GI_number: 15616199 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus halodurans # 18 307 19 302 302 301 57.0 8e-82 MELTEEKREEVLQESIPPMGFRMIAREFVKEKMAMFSLILLVIILLAVFIGSLVLDQSAV MHVSILDKYAEPGTVTMNGTKFILGADEGGRDVLGQLIIGARNSILIGFAITIITSIIGV GLGIISGYYGGMIDNILMRIVDFIMILPIMLIIIVFVSVIPKYSIWSFIWIMCAFYWVGK ARLFRSKTLSEGRRDYVSASKTMGTSDFKIMFREIMPNLSSLIITNLTINFAANIGIETT LTFLGFGLPQSVPSLGTLIGYASSGDVLVNKQWVWLPASILILVLMLSINYVGQAFKRSA DARQRLG >gi|284795430|gb|ADDQ01000119.1| GENE 13 12778 - 13740 1112 320 aa, chain - ## HITS:1 COG:BH3638 KEGG:ns NR:ns ## COG: BH3638 COG0601 # Protein_GI_number: 15616200 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus halodurans # 1 320 1 322 322 348 51.0 5e-96 MWKTILRRLLLMIPQVIILSVLIFLLAKMMPGDPFTGLINPNQDPKVIEAMREAAGLNDP WYEQYFRWIGNALHGDFGHSFIFKLPVSTLIAGRVGNTIALAAVSVIITYLIAIPFGLIA GRYQNSWFDKMVVIYNFFSFAVPLFIFALIMLFIFGYRLDWFPTSGTVTVGLAEGTWPYY LDKLKHLILPGVTQALLGTAVTIQYLRSEVIDVKNMDFVRTARSKGVPTNKIFNRHIFRN AALPIASQLGYEITALIAGSVVIEKIFAFPGIGKLFIDSIIQRDYSVITALVLILGLATL IGTLISDIVMSIVDPRIRIQ >gi|284795430|gb|ADDQ01000119.1| GENE 14 13740 - 14684 1019 314 aa, chain - ## HITS:1 COG:L92192 KEGG:ns NR:ns ## COG: L92192 COG4608 # Protein_GI_number: 15673822 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, ATPase component # Organism: Lactococcus lactis # 1 312 1 312 319 415 64.0 1e-116 MTEIIQIKDLKVHYPIRSGFFNRITDHVLAVDGVDFMIEQGKTYGLVGESGSGKSTTGKA IIGLEKITNGEIIYQGQDVTKPRSRKAIGYNKDVQMIFQDSMSSLNPKKRVLDIIAEPIR NFERLSDQEEKKKVKSLLDIVGMPEDALYKYPHEFSGGQRQRLGVARAVATSPKLIIADE PVSALDLSVQAQVLNFMKNIQQEYGLSYLFISHDLGVVKHMCDNIAIMYKGRFVEIGTRQ DIYTNPQHIYTKRLLSAIPKIDVANREAHKEERRRVEQEYRENHKDYYDENGRVYNLHAI SPTHQVALKNGGAE >gi|284795430|gb|ADDQ01000119.1| GENE 15 14684 - 15691 602 335 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 4 324 8 328 329 236 40 2e-61 MQGNEQLLEVSGLETAFRIKDDYYNAVDDVSFELKKNEILAIVGESGCGKSTLATTIMGL HDPNHTKITGEILYNNLNLTTFNETLYNKVRGNDIGMIFQDPLSALNPLMRIEDQIKESL TYHTKMTAQQKQARAIELLDQVGIPNPERVGKQYPHELSGGMRQRVIIAIAIACKPPILI ADEPTTALDVTIQAQILDLLKDLQEETGSGIILITHDLGVVAEMADRVAVMYAGQFVEVA TAEELFSHPKHPYTRSLLQSIPQENSDEEELHVIEGIVPSLTKLPRKGCRFAPRIPWIDA SEHEENPTLHEVAPNHYVRCTCYKHFHFRDGEGEA >gi|284795430|gb|ADDQ01000119.1| GENE 16 15988 - 16227 445 79 aa, chain - ## HITS:1 COG:lin1920 KEGG:ns NR:ns ## COG: lin1920 COG0236 # Protein_GI_number: 16800986 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Listeria innocua # 5 79 3 77 77 61 57.0 5e-10 MTREEVLQKVAKIISNHFDIEADQVTDQLNIKDDLNADSISVMEFVLELEDEFGTEISDE DAEKIETVGAAVDYIVSNS >gi|284795430|gb|ADDQ01000119.1| GENE 17 16364 - 17365 1407 333 aa, chain - ## HITS:1 COG:SP0037 KEGG:ns NR:ns ## COG: SP0037 COG0416 # Protein_GI_number: 15899983 # Func_class: I Lipid transport and metabolism # Function: Fatty acid/phospholipid biosynthesis enzyme # Organism: Streptococcus pneumoniae TIGR4 # 2 331 3 330 330 428 70.0 1e-120 MKIAVDAMGGDNAPQAIVEGVMLAKQDFPDIEFQLYGKEAEIKKYITDEKNITIIHTDEK IASDDEPVKAIRRKKTASMVLAAQAVKNGEADAIFSAGNTGALLAAGLFIVGRIKNVERP GLMSTLPVMGEPDKGFDMLDLGANADNKPEHLVQYAVLGSFYAEKVRNVQNPRVGLLNNG TEETKGSELTKKAFELLAADETINFVGNVEARELLNGVADVVVTDGFTGNAVLKSIEGTA MNMMSLLKTAILSEGVKGKMGALLLKNALRGMKDEMDYSKHGGAVLFGLKAPVIKTHGAT GPDAVRYTIRQIHTMLETQVVPQLVEYYEGKAE >gi|284795430|gb|ADDQ01000119.1| GENE 18 17468 - 19504 2012 678 aa, chain - ## HITS:1 COG:SPy1785 KEGG:ns NR:ns ## COG: SPy1785 COG1200 # Protein_GI_number: 15675625 # Func_class: L Replication, recombination and repair; K Transcription # Function: RecG-like helicase # Organism: Streptococcus pyogenes M1 GAS # 1 671 1 668 671 757 56.0 0 MDITDLVSVLPGVGPKRAENLQELGIATIEDLLTYYPFRYDDIQEKDLSEIQDQEKVTLK GLVVSEAVVSRYGYKKSRLTFRMMQEHAVINVSFFNQPFLKDKVVLSEEIAVYGKWDAKR KSLNGMKILASKGDNEDFAPIYHVNKKVRQSTLVQLIRTAFEEYGSLVEEILPNDLLEKY RLMPRKEAMWAMHFPSNPEESHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDV ERLKTFTQGLPFELTGAQKKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMT AGFQGALMVPTEILAQQHMESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIV VGTHALIQQDVSFHQLGLVITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITA YGEMDVSIIDEMPAGRIPIETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALD VKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNV PNATVMLIMDADRFGLAQLHQLRGRVGRGSSASYCILVANPKNEMGVERMKIMTETTNGF VLSERDLELRGPGEVFGARQSGVPQFAVGDIVTDFNILEVARQEASALWKVKEWWQYPAY QGLANRVKPQDEAAQFFD >gi|284795430|gb|ADDQ01000119.1| GENE 19 19620 - 21296 2164 558 aa, chain - ## HITS:1 COG:SP0443 KEGG:ns NR:ns ## COG: SP0443 COG1461 # Protein_GI_number: 15900360 # Func_class: R General function prediction only # Function: Predicted kinase related to dihydroxyacetone kinase # Organism: Streptococcus pneumoniae TIGR4 # 3 558 1 555 555 644 62.0 0 MNVTEISAGQFQEMVQAGATRLHTNAEYVNSLNVFPVPDGDTGTNMNLSMTSGAKAVADS RSEKVGELAGALSKGLLMGARGNSGVILSQLFRGFSKQIPEVTTLNAKDLAAAFTHGVET AYKAVMKPVEGTILTVSREAARSGERKAKETDDCIEVMTAVVAGAKRALAKTPDLLPVLK EVGVVDSGGQGLLFIYEGFLEALSGEFLPTETYEPSPAEMDEMVNAEHHRGVSGHVATED IKFGYCTEIMVRIGEGPTVDSAFDYETFRNYLNELGDSLLVVNDDEIIKVHVHTEHPGEV MNYGQKFGSLVKIKVDNMRLQHETLVERDAQQEALTEKVRVPFAVIAIAAGEGVQELFRS LGASYIISGGQTMNPSTEDILKAVKEVNAEQVIILPNNKNIFMAADQAAEVADVPVAVVP SKTISQGMTAMLAFNDQQSLEENKASMTEMLDSVVSGQVTTAVRDTTIDDVEIKKDDFLG MIDGKIVVSEADRFNASLDTLNRMIDEDTEIVTIIVGEDGSVEEAEKLIAILVSENDELE TELHEGGQPVYPYLFSAE >gi|284795430|gb|ADDQ01000119.1| GENE 20 21379 - 21741 584 120 aa, chain - ## HITS:1 COG:lin1929 KEGG:ns NR:ns ## COG: lin1929 COG1302 # Protein_GI_number: 16800995 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 120 1 120 121 142 64.0 1e-34 MAVKIQTPAGTIEITNDVIATVVGGAATDIYGIVGMASKNQIKDNLNDILRRENYSRGVV VRQEDNGIAVDVYTIVSYGTKISEVSRNVQEKVKYNLETLLGVTANSVNVFVQGVRVLPD >gi|284795430|gb|ADDQ01000119.1| GENE 21 22015 - 22203 318 62 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29377572|ref|NP_816726.1| 50S ribosomal protein L28 [Enterococcus faecalis V583] # 1 62 1 62 62 127 100 2e-28 MAKVCYFTGRKTSSGNNRSHAMNSTKRTVKPNLQKVRVLIDGKPKKVWVSTRALKSGKIE RV >gi|284795430|gb|ADDQ01000119.1| GENE 22 22306 - 22950 706 214 aa, chain - ## HITS:1 COG:SPy0265 KEGG:ns NR:ns ## COG: SPy0265 COG1564 # Protein_GI_number: 15674445 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine pyrophosphokinase # Organism: Streptococcus pyogenes M1 GAS # 1 213 1 208 210 174 45.0 8e-44 MSRVLLVAGGNPSDWPTIEPATYDYFVGIDRGCLHLLEADLPLQLAVGDFDSLSREEYHF VQETAETLIQAPAEKDDTDTQLALQEALQRFPQAEMTIIGATGGRIDHLLANLWLPFEPR FQGVLRQIRLCDRQNSIQYYAPGSYIVPKEPDKEYLAYCCLTPVENLTLRRSKYLLTNQD VPYPTSYASNEFIEEAAAFSFDAGMIAVIQSKDK >gi|284795430|gb|ADDQ01000119.1| GENE 23 22947 - 23600 936 217 aa, chain - ## HITS:1 COG:lin1932 KEGG:ns NR:ns ## COG: lin1932 COG0036 # Protein_GI_number: 16800998 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Listeria innocua # 2 215 3 216 218 272 64.0 3e-73 MKLAPSILSADFANLERDIRLVEELGADYIHVDVMDGQFVPNITLGPNIVSAIRPVTKLP LDVHLMIVQPENYINAFAEAGADIITVHQEATPHIHRALQMIKNAGVKAGVTINPGTPLS MIENVLDLADQVLVMTVNPGFGGQSFIENSLEKIAQLKEWKETKGYTYEIEVDGGIVPET AARCKEAGAEVFVAGSYIYNAENPQERIDALRAVLDK >gi|284795430|gb|ADDQ01000119.1| GENE 24 23624 - 24517 902 297 aa, chain - ## HITS:1 COG:lin1933 KEGG:ns NR:ns ## COG: lin1933 COG1162 # Protein_GI_number: 16800999 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Listeria innocua # 4 293 2 291 291 329 53.0 3e-90 MVYLKGQIRKALSGFYYVYADGETYQTRARGNFRNRKITPLVGDEVLFESDNLTDGYVLE ILPRRNELVRPPVANVDLGVVVMSMVSPNFSFNLLDRFLVSLEYKDIEPVIYLTKVDLLD EPQRQEVTEIKQIYEALGYAVIASEDVEATKELERFFPERLTVFMGQSGAGKSTLLNQIS PELQLATAEISQSLGRGKHTTRHVELIPLYDGLVADTPGFSAIDFLEMEAVELPKQFPEF VAAASHCKFRECMHHKEPGCEVKRQVEAGTIATSRYENYLQFLMEIENRRPVYKKKS >gi|284795430|gb|ADDQ01000119.1| GENE 25 24766 - 26922 2346 718 aa, chain - ## HITS:1 COG:lin1934_1 KEGG:ns NR:ns ## COG: lin1934_1 COG0515 # Protein_GI_number: 16801000 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Listeria innocua # 4 282 3 281 342 388 70.0 1e-107 MIEIGKKLNGRYHIIGSIGSGGMANVYLAHDLILDRDVAVKVLRFDFQNDQAAIRRFQRE ALAATELVHPNIVSVYDVGEEDGLQYLVMEYVKGMDLKRYIQTHFPIPYSTVVDITQQIL SAVAMAHEHRIIHRDLKPQNILIDEHGTVKITDFGIAIALSETSITQTNTMLGSVHYLSP EQARGSMATNQSDIYAVGIILYEMLTGNVPFDGESAVTIALKHFQEEIPSVKMFDPGIPQ SLENVVRHATAKDPSDRYKTANEMAEDLYTSLSASRLNEPAWEPTALLGETKVLTPIPED IAEPEETTPVEVPEDIADDILAEQPPKKNRKKLWIGLAIAALIALAIGGLAFAMSGGKDV EVPDVTNETKADASQALQSAGLKVDSETKKIPDDKIEEGKVVKTDPEAKSSVKKGRSVTL YISSGTEKIEMADYTNESYESAVEALKKLGFSEDQITTKKEYSDSVSTDNIIKQKPAAGK KVDPKKDKVTLTVSEGPEAVTLPSYAGYSYTNAVNALAQLGISESQITRVDQASDTVEPG LVITQDPAPGGTVTPKNGQVTLYVSKGSDKVTLSDYSGISYDNAVSRLIALGIPESQIKR VDEESDKVEKDTVISQEPASGTAVDPKNDTITLHVSKGSDSVTVPDISGYSPKAAEDSIN NAGLKINEQGLSGSGDGQVVERTSPSAGSKVKKGDSVTVYYSKANDSKSTTSESSTSN >gi|284795430|gb|ADDQ01000119.1| GENE 26 26919 - 27668 774 249 aa, chain - ## HITS:1 COG:SPy1626 KEGG:ns NR:ns ## COG: SPy1626 COG0631 # Protein_GI_number: 15675502 # Func_class: T Signal transduction mechanisms # Function: Serine/threonine protein phosphatase # Organism: Streptococcus pyogenes M1 GAS # 1 247 1 246 246 216 45.0 4e-56 MEINVQSDVGRKRNTNQDYANVFENQQHITFAVLADGMGGHQAGDVASQMAVNNLGESWS NASVDSAEKSAQWLIQAIQKENEKIYERGQSKPEYLGMGTTVVGAILLPDSFVLANVGDS RAYLVRDQHMLQLTEDHSLVNELVKSGEITREMAANHPRKNVLTRSLGMPGTVEVDVTNH EWLPNDYLLLCSDGLTNMVPETKILEILETSDPLESKLSQLVAQANEAGGLDNITVLVIH FDEQKEENQ >gi|284795430|gb|ADDQ01000119.1| GENE 27 27670 - 29049 1372 459 aa, chain - ## HITS:1 COG:BH2507 KEGG:ns NR:ns ## COG: BH2507 COG0144 # Protein_GI_number: 15615070 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Bacillus halodurans # 11 452 4 448 450 418 49.0 1e-116 MAEKIPKKLKRSVRYVALETIERVDKGGAYSNLLLNEMMTKSELSEKDGRLFTELVYGTI SRKLLLEYYLTPFVKKPQRVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIGKRRGNP GIGKFVNGVLRAFQRNGAPSLAAISDPVDRLATEISMPRWLTEKLLAQLGEEETRQLGLS LFEKSHASGRVNTRFISREEALEELQETGIAAKESQLSPYGVVAEKGYLAGSELFINGCL TIQDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKL INENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAPCSGLGLMRRKPDIKYHKTA NDFQNLPKIQLEILESVAPTLKQWGIMVYSTCTITPEENQEVVAAFLAKHPEFEKIEIVA NENVQAVVKEQELVLYPHQYMTDGFFICCMRKVSSNEVK >gi|284795430|gb|ADDQ01000119.1| GENE 28 29055 - 29996 1274 313 aa, chain - ## HITS:1 COG:BS_fmt KEGG:ns NR:ns ## COG: BS_fmt COG0223 # Protein_GI_number: 16078636 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Bacillus subtilis # 1 301 1 301 317 338 56.0 7e-93 MTKIVFMGTPAFSVPILESLIEAGYDVQAVVTQPDRPVGRKKVITPTPVKEAALKHNLLV LQPEKISGSPEMEKVIDLAPDLIVTAAFGQFLPEKILKAPKLGAINVHASLLPKYRGGAP VHYSIIEGEKETGVTIMEMVKKMDAGAILAQRAIPITKQDDVGTMFEKLSILGKELLLET LPKLIAGEITPIPQVEEEATFSPNITREQERIDWQKTAEAIDNQVRGMRPWPTAFTTYQG TNWKIWAVTPLTETTTSAPGTIIQRSKKALWIACGEGTVLQIDRLQPAGKGQLTIQEFLN GVGQNVAEKDKVD >gi|284795430|gb|ADDQ01000119.1| GENE 29 29989 - 30483 675 164 aa, chain - ## HITS:1 COG:BS_def KEGG:ns NR:ns ## COG: BS_def COG0242 # Protein_GI_number: 16078635 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Bacillus subtilis # 5 159 6 159 160 138 52.0 4e-33 MRYPVVIHPNEHLKMKAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVI EIDEESGRFELINPVIIEKKGTSIDVEGCLSIPETYGTVERADEVTVRYFDREGEEMEVT AYGYLARAFQHEIDHLNGELFIDKMIEKIAPEDLEAYMEEHFDD >gi|284795430|gb|ADDQ01000119.1| GENE 30 30510 - 32942 2428 810 aa, chain - ## HITS:1 COG:lin1938 KEGG:ns NR:ns ## COG: lin1938 COG1198 # Protein_GI_number: 16801004 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Listeria innocua # 1 806 1 793 797 868 54.0 0 MQKVAKVIVDVPTMQTDQPFTYLVPENLNEQLAVGMRVEVPFGNGNRHVQGFVLAIEPVA ATVLDETNVQLKELVAVLDLKPVLNTEMLALADYMKEKTFAFKITCLQTMLPSVMRADYQ KYIYLTDELSEELQDQLFYGLEEISWDQAQERGLLPQLMALRKQQKVDIRYEVTTRNKVK MVRFIQAAKEFEQLEEIRLGLRKGAKKKGQLLYYLQRLGTEKVTAVKEMKELGFSTALLN EAAKNGWLTFIEKEAYRDPFANQTFEKTTALSLNAEQQVAVETILQSVQEQQSQTYLLEG ITGSGKTEVYLQVIAEVLNQGKTAIMLVPEISLTPQMVQRFKSRFGEHVAVMHSGLSQGE KYDEWRKIERGEAEVVVGARSAIFAPIENIGVIIIDEEHEASYKQEETPRYHARDLAIWR SEYHHCPVVLGSATPSLESRARAQKNVYQRLRLTQRANQAATLPTIDVVDMRQEVENGNV SSFSMSLQEKLQERLEKNEQSVLLLNRRGYSSFVMCRDCGYVLPCPNCDISLTLHMDSKT MKCHYCGHEERIPYRCPNCGQDKIRYYGTGTQKVEEELQTLLPDSRILRMDVDTTRRKGA HEKILRTFGEGQADILLGTQMIAKGLDFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQ VSGRAGRAEKPGEVIIQSFNPEHYAIQLAKAQDYEDFYTKEMYIRHRGDYPPYYFTVQIT ASHPEENEAAKQMFQIATKLKQGLSPQAILLGPTPNAIMRVNNRYFYQVIIKYKQEPMLQ PLLKEILTDTQRATARGLKLSIDAEPMNFI >gi|284795430|gb|ADDQ01000119.1| GENE 31 33097 - 33399 475 100 aa, chain - ## HITS:1 COG:SPy1630 KEGG:ns NR:ns ## COG: SPy1630 COG1758 # Protein_GI_number: 15675506 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, subunit K/omega # Organism: Streptococcus pyogenes M1 GAS # 2 81 1 79 104 73 61.0 6e-14 MMLKPSIDSLLKEVPSKYSLVILASKRAHELDEGVQPTVESFDSVKSVGRALEEIEAGTV ISDPNPEEKRERLRIEREERKRQREQEQKELENRLRDEKN >gi|284795430|gb|ADDQ01000119.1| GENE 32 33404 - 34018 766 204 aa, chain - ## HITS:1 COG:SP1738 KEGG:ns NR:ns ## COG: SP1738 COG0194 # Protein_GI_number: 15901570 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Streptococcus pneumoniae TIGR4 # 1 201 1 201 208 286 72.0 2e-77 MSERGLLIVLSGPSGVGKGTVRKAIFDSEENDFQYSISMTTRKQREGEVDGVDYYFRSRE EFEAMIEAGEMLEYAEYVGNYYGTPLTYVNQTLDEGKDVFLEIEVQGAKQVKDKVPDGVF IFLTPPDLAELKSRIIGRGTDEMSVIEERMAVAREEIEMMALYDYAVVNDEVPLAVQRIK DIIASEHFRVDRVIGKYIKMLEEM >gi|284795430|gb|ADDQ01000119.1| GENE 33 34241 - 35722 1516 493 aa, chain + ## HITS:1 COG:SA0598 KEGG:ns NR:ns ## COG: SA0598 COG1686 # Protein_GI_number: 15926319 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Staphylococcus aureus N315 # 33 415 20 400 431 229 37.0 1e-59 MNKKGLRNIARIKPFTLFLLGLVVSCGAFFAQPTVTHAEEDITAIAKKMGTTLKADGIPK AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDI SKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAE LGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITN KPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLI EVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYGV VPKGSQPTFKLVAGQVQVDTPLTLLNSTVQAPKVAYQEVKPKQTTAEAAEESNEHSGDTT VAEPNHFIPKSIATSVLVLFGLIFSVITRQLQKRLERQKKHGKESSKTASMRTIFLSAAV LSFLCAIGLFLLF >gi|284795430|gb|ADDQ01000119.1| GENE 34 35766 - 36071 461 101 aa, chain - ## HITS:1 COG:no KEGG:EF3130 NR:ns ## KEGG: EF3130 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 101 1 101 101 181 100.0 7e-45 MTEVKAMTKFYDVTFQELSGRSVVKTEVASDREPFDVWQDACASYSETELNIQINEDTFV TLNRHFVVRIDVKEVDGPVDKQVRRRDELMNVVNTLSNMGL >gi|284795430|gb|ADDQ01000119.1| GENE 35 36127 - 37011 1109 294 aa, chain - ## HITS:1 COG:lin1942 KEGG:ns NR:ns ## COG: lin1942 COG1561 # Protein_GI_number: 16801008 # Func_class: S Function unknown # Function: Uncharacterized stress-induced protein # Organism: Listeria innocua # 1 294 2 291 291 180 37.0 3e-45 MKSMTGFGKKTIQNENYQLDVEVKSVNQRFLDIQLRMPKELNAYELVIRQVIKRTLKRGR VEVYVNLQKIGNNQKEVRVQWDLIDQLLTSVDQHLKENYPEATFDAGDTVNHLLKQNDFV EIVEAEIVDQTFEPFLVQAFEAAITSLDQSRVQEGTQIKQVLLDYVAVLTQSIQELQAFV VVFEQEYRQRFEAKLNEWLGSQVDETRLLTEMAILLEKGDIHEELDRLNIHIDKLHQLLD ETEPVGRELDFLIQEMNREVNTIGSKSSPIEIKNSVVQMKTTLEKIREQIQNVE >gi|284795430|gb|ADDQ01000119.1| GENE 36 37028 - 37246 400 72 aa, chain - ## HITS:1 COG:L114363 KEGG:ns NR:ns ## COG: L114363 COG4443 # Protein_GI_number: 15672295 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 1 69 1 69 72 84 62.0 6e-17 MKEEFSYEILEEVAVLSENARGWRKELNLISWNGRPPKFDLREWAPDHEKMGKGITLTNE EFAELSKTIKSM >gi|284795430|gb|ADDQ01000119.1| GENE 37 37422 - 37892 586 156 aa, chain - ## HITS:1 COG:lin2984 KEGG:ns NR:ns ## COG: lin2984 COG4405 # Protein_GI_number: 16802042 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 4 149 7 151 153 103 38.0 1e-22 MLKNVEVFWQNFLDKHELDMLMPDVWMFGDGSSEMGNRLGQLVVSGRKTATCSSLDIYKM EGEQLPKAGQYDIILDGQSQPLAIIRTTKVEIMPMNKVSESFAQAEGEGDLTLDYWYEEH ARFFKEELAPYQLQFYPDMLLVCQSFEVVDLYTEKE >gi|284795430|gb|ADDQ01000119.1| GENE 38 38061 - 38714 774 217 aa, chain - ## HITS:1 COG:VC0285 KEGG:ns NR:ns ## COG: VC0285 COG0800 # Protein_GI_number: 15640313 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-6-phosphogluconate aldolase # Organism: Vibrio cholerae # 12 197 5 190 201 135 38.0 7e-32 METKVEKNQLYQQLATCKLLPLYTATDLRYLPQVESVLVENELPFIEVTFRSQLALPAIK QLAASGNLIVGAGTVRTLKEAQEAVANGAQFIVSPAIVPEVIDFCLANEVPIFPGTATPG EIQRALAYGLRVVKFFPADIYGGLKAIKSLSGPFYDVQFLPTGGIDETNFIEYVEAEEVL AVGGSFILSEKMLQEDEASARQHVQSLLTKIKERQAK >gi|284795430|gb|ADDQ01000119.1| GENE 39 38719 - 39792 1148 357 aa, chain - ## HITS:1 COG:TM0069 KEGG:ns NR:ns ## COG: TM0069 COG1312 # Protein_GI_number: 15642844 # Func_class: G Carbohydrate transport and metabolism # Function: D-mannonate dehydratase # Organism: Thermotoga maritima # 1 356 1 358 360 423 55.0 1e-118 MKWGFRWYGAAGDAIPLKHIRQIPGITGVVGTLLNKLPGDVWTVAEIQALKQSVEQEGLA LLGIESVAIHDAIKAGTDQRDHYIDNYRQTLRNLGKCGISLVCYSFKPIFGWAKTDLAYE NEDGSLSLLFDQAVVENMQPEDMYQLIHSQSKGFRLPGWEEERLQQFQELKAMYAGVTEE DLVENLRYFLERVIPVCEEENIKMGIHPDDPPWEIFGLPRITKNLADLKRILSLVDSPAN GITFCTGSLGADPTNDLPTMIREIGHRINFVHFRNVKYLGEHRFEETAHPSIAGSLDMAE LMQALVDVGYEGVIRPDHGRAIWDEKAMPGYGLYDRAMGLTYIQGLYEATKAKQNRK >gi|284795430|gb|ADDQ01000119.1| GENE 40 39816 - 40268 733 150 aa, chain - ## HITS:1 COG:CAP0066_1 KEGG:ns NR:ns ## COG: CAP0066_1 COG2893 # Protein_GI_number: 15004770 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Clostridium acetobutylicum # 1 131 1 127 157 71 34.0 6e-13 MLGIVIATHGALSDGAKDAATVIMGATENIETVNLNSGDDVQALGGQIKTAIENVQQGDG VLVMVDLLSASPYNQAVLVINELEPALQKKIFVVSGTNLPMVLEAINHQLLGTPIAEAAQ AIVAQGKESVQAWDISMTSFEDEEDEDDDF >gi|284795430|gb|ADDQ01000119.1| GENE 41 40346 - 40852 612 168 aa, chain - ## HITS:1 COG:ECs5001 KEGG:ns NR:ns ## COG: ECs5001 COG3444 # Protein_GI_number: 15834255 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Escherichia coli O157:H7 # 4 151 3 147 164 67 30.0 1e-11 MGVVNLARVDERLIHGQVMVTLSQKSGVNSIFVVDEVVAKDKFMRDLYKSAGSRTGQKTI VITPEKAKFYWDEYQFKEYNCILIAKTVSVIYDLVKHGVPMKELNIGGIAQKNPEKDLLV TKSVYLNKEDAEKLKELHEVYGVEDIYFQATPSAPKTSLKEVLGKFNL >gi|284795430|gb|ADDQ01000119.1| GENE 42 40874 - 41746 1246 290 aa, chain - ## HITS:1 COG:STM3769 KEGG:ns NR:ns ## COG: STM3769 COG3716 # Protein_GI_number: 16767053 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Salmonella typhimurium LT2 # 20 290 21 286 286 168 36.0 1e-41 MTETTEKVVPKTTNLAPEEITNKDVTKAYLRWHFANEIPHSFERYLAPSLLYAMMPLLKK LYKDDEQLKAAYMRQLLFFNTQLSWGGGVITGLMASMEQERAKEEHEGREIMMQDDLMYN TKAGLMGALAGIGDAIDSGTVQYIFIAIAVPWAQQGSALGAIFPFVAFALYQVLLGVFFA RQSFKMGRNATGLMQSAGIQKAIEMLSVLGLFMMGILAGNYVKVSSTLQFKLSGREFVVQ DILDQIVPGLLPLAVVMGVYWFYTKKGLKVTQALLWLTGILIVLATVGIL >gi|284795430|gb|ADDQ01000119.1| GENE 43 41767 - 42603 760 278 aa, chain - ## HITS:1 COG:STM3770 KEGG:ns NR:ns ## COG: STM3770 COG3715 # Protein_GI_number: 16767054 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Salmonella typhimurium LT2 # 34 256 30 249 249 119 33.0 5e-27 METLSVLQSLIMALWVAAIMSRWLGGGATLTLRFSPLMTGLVAGLVMGDVPKAMIVTAAL QMIYMGVFSPGGSMPAEPSIAAAIAVPVALLGNLKPEAAIAVAVPVGLLGSYLYQFRFFI NTFLGKYTDRAVAELNSKKIARSIIWYPTIASFILFVPLVFFALYLGAPVIADIIKALEG TVVIHVLEVVGGGLAAIGIATTVYVIGRKDFLVFFFLAYFMSIVFKSLEITMVTYAIFGV IIALIFVQVQKGKPVAESAGSASATTDFDDDDDYDDGF >gi|284795430|gb|ADDQ01000119.1| GENE 44 42616 - 43722 1086 368 aa, chain - ## HITS:1 COG:lin1848 KEGG:ns NR:ns ## COG: lin1848 COG0371 # Protein_GI_number: 16800915 # Func_class: C Energy production and conversion # Function: Glycerol dehydrogenase and related enzymes # Organism: Listeria innocua # 4 361 5 358 368 250 37.0 3e-66 MLTDLKVKVGPQFYRYHEGALASVPSLFKEYHAQRILVVHGTVSFEKAQPFLPFLADSEY QFFYHTYTGECSYFGAEQISQQIKEHQIDFLLGVGGGKLADLVGYSAHLNNLNFGLVPTL ASNCAPWTPLAVMYQENGAAEGKTEHFFRQAAFLITDPKLLLDAPRDYFVAGLADTLAKW YESETILRQAHLQGEPFLQLAGATAKLSQEAIMRDSKAALAAMDEGKLTPEFVHLSEIVF AVSGLVGGFGDKYARNAAAHAMHDAMSKFLPKSHDYLHGEKVAYGIFYQLALEKRWAIID ALIPFYQELNLPMSLRQMGLYPEEEAVLDAMVQFIDSKEKVHLIPIEISQERLRQGIEEL EKYIQNQG >gi|284795430|gb|ADDQ01000119.1| GENE 45 43737 - 44738 887 333 aa, chain - ## HITS:1 COG:AF0813 KEGG:ns NR:ns ## COG: AF0813 COG0111 # Protein_GI_number: 11498419 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Archaeoglobus fulgidus # 37 325 26 311 527 171 35.0 1e-42 MLKKQKIAIVNSSSFGQIFPEHLTRLEKIGTVKHFTVDSEIGGKELAERLQGYTIIIASV TPFFTKEFFEHKDELLLISRHGIGYNNIDLDAAKQHDTIVSIIPALVERDAVAENNVTNL LAVLRQTVAADASVKADQWEKRANFVGRTLFNKTVGVIGVGNTGSCVVETLRNGFRCDVL AYDPYKSATYLQSYGAKKVDLDTLLASADIICLCANLTEESYHMIGSAEIAKMKDGVYLS NSARGALIDEEAMIAGLESGKIAGLGTDVLEEEPGRKNHPYLAFENVVMTPHTSAYTMEC LQAMGEKCVQDVEDVVQGILPQRAVQEVSRYVS >gi|284795430|gb|ADDQ01000119.1| GENE 46 44751 - 45650 891 299 aa, chain - ## HITS:1 COG:BH2674 KEGG:ns NR:ns ## COG: BH2674 COG1023 # Protein_GI_number: 15615237 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted 6-phosphogluconate dehydrogenase # Organism: Bacillus halodurans # 1 298 1 298 298 280 46.0 3e-75 MDIGFIGLGKMGLNMALNVHEQGWPIIGFDVTKGARATAREQGLSVVDSLPELLKALNKR KVIFLSTPAGQITNQLVAELVEQLAPEDIIVDSGNSNFHDSVANAQLAKEKGIYFIDCGT SGGIKGAREGACLMVGGAPEAVKVLTPFFEDLACEQGYLYAGKSGAGHYLKMVHNGIEYV MMQAMGEGFNLLEAAEYDFALEKVADVWNHGSIIEARLMGLAKEVFAENPTLANLEGKVA ANGEAKWMIEEALRLEMPVPTTALSLFTRNESMLANHFSNKVVASLRQGFGGHEVVKSQ >gi|284795430|gb|ADDQ01000119.1| GENE 47 46060 - 46947 726 295 aa, chain + ## HITS:1 COG:L54944 KEGG:ns NR:ns ## COG: L54944 COG1737 # Protein_GI_number: 15674168 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 6 288 5 280 282 151 33.0 2e-36 MKNHYLDQRIRIKKPNLSLTEKKISDYFVHSESLLTQMTLESLANEIGVSQSSVYQFVKK IGYSGFQEFKIDIARNSNYQPTFQNVNSVNGADDISPDDDSITIAKKVLQANIYSLSNAT QFLTKELLDNVLALMYSAKTLHFFGQGGSSIVAFDSFHKFIRTNYRCNYIFDYHMQLSFV TKLTSEDCVFIFSHSGKTKESINLARQVKKTNAKMITLTGNSGSELAGLSDEAIIVVTEE GLFRAESLASRISYLTVMDILYTNTMYHNFDQNADSLKKIRDNISTTKTDPHYLS Prediction of potential genes in microbial genomes Time: Sun May 15 13:25:40 2011 Seq name: gi|284795429|gb|ADDQ01000120.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont285.1, whole genome shotgun sequence Length of sequence - 1526 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 447 152 ## SAUSA300_pUSA0301 replication initiator protein - Prom 532 - 591 11.8 + Prom 565 - 624 7.2 2 2 Tu 1 . + CDS 694 - 1525 492 ## COG1192 ATPases involved in chromosome partitioning Predicted protein(s) >gi|284795429|gb|ADDQ01000120.1| GENE 1 3 - 447 152 148 aa, chain - ## HITS:1 COG:no KEGG:SAUSA300_pUSA0301 NR:ns ## KEGG: SAUSA300_pUSA0301 # Name: repA # Def: replication initiator protein # Organism: S.aureus_USA300 # Pathway: not_defined # 5 139 4 130 319 131 55.0 6e-30 MENFQFYKSKEIYREKYYQMPKVFFTNEMYKSLSNDAKIAYMLLKDRFDNSVKNNWVDSE DNIYFIYTVAELMTLLNCREGKVSKIKKELEAVNLLKQKKGRVKKMNGKIETTPNLLYLG KPNVTSEDVFKINEEQNNVNPVIAKIAN >gi|284795429|gb|ADDQ01000120.1| GENE 2 694 - 1525 492 277 aa, chain + ## HITS:1 COG:pli0069 KEGG:ns NR:ns ## COG: pli0069 COG1192 # Protein_GI_number: 18450351 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Listeria innocua # 8 271 18 284 293 95 23.0 7e-20 MLVDKGVSGKVIMLTGRKGGIGKSIDNELLSIVGSQIFNKDICLIDYDQQRNTTSNISST YQISKFERSLASAITNNDWESGITKISPHLYVMAGSPGSEELNEHLSQKYPNKHDRHLAF IQPLKELRKKFDYIFVDCPPSTDNVVRAFLTAADYVIPMQELKRYAMEGTEDFIEKVLIP IVSNFEETNLQIIGILPVMFSARRESQRANYQKTVDKYGKENIFKTIVKGSDRLETYGET GVQLNDYVDRRWWAIFADIFTELEERIEYYESHGDIV Prediction of potential genes in microbial genomes Time: Sun May 15 13:25:43 2011 Seq name: gi|284795428|gb|ADDQ01000121.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont290.1, whole genome shotgun sequence Length of sequence - 3044 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 2976 1813 ## EF3252 hypothetical protein Predicted protein(s) >gi|284795428|gb|ADDQ01000121.1| GENE 1 3 - 2976 1813 991 aa, chain - ## HITS:1 COG:no KEGG:EF3252 NR:ns ## KEGG: EF3252 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 991 1 969 1265 794 54.0 0 MKQTKWQRLATIGLCSSLVINAFSGVTAVAETVTIESSPTAESSAKEETQASSVKEETTK ASTENSQVTTDTSQEEETKEAEKQAETEVKEAQKSIEESNLGLSESPVIEPRVITPKASI SLPQTTLNWAVIDEMGNSVPLDTPISGNRYSGQFGKHVNHGGVNSTPYSTSYAGKTIHFN RLVVPGLVFSDTSEAYIYGLRVLRVTLPRMYQGLTFQRTAGSLPLTYATVYGNNGQTLQT RVIMNEALVLTTGNTYGVRETGGLGNISVKFSGAHLFLGAWSTPSVPSNYSFSVYTPVTP TNNMNISYLYTQRRKVTEKFVDANGVAITPPTGFTQNRKTPMTSNAFTFKQAGTLPDTYT TGGKTYKFKGWYKGKTKPSTLTTTKAPSYKVTYDGNDDLNVVYEETNFPAVTYQFGFVNE AGQLVNPADIKITYDYKSVDYRRATSAFSYGTIADNQSAPTVGNLKNVSFPETYIARPTE GGWNGEAYSNFSIKLPRYYQSLNLYDKTNKINPNYPLPVITQNYSASDNVVLSETAAISL LTATQRPDQSYTPKEQVSGEGRYPTLLRRLISSIDVASGSATYQTLSGPVYYHLTNRKVT ENFVDTSGAKITPPTGFTQGKQTAITSDPYTFKQAGTLPDTYTTGGKTYKFKGWYRGKTK PSTLTTTKAPSYGVTYDGNDDLNVVYEEETVTTFYPSVNMNFVNEKGGAFTPALTFSGKY YVRRNSDNVITNLYDVTSKSKGNGQYTVSINNGSVPLSQELFRKYTNGYLPMVPNSLAFR LDKLAIDQQLKYVDSIQVEAAQSSGLNVYGYDYTNSSSTIIDSSVAPTVSNLSTADINGL NFKTDGTNFSNTSFRFLGMTIGSSMNANGSYLFFTNLFSNNPTNDAKLVYKVTRKQVTEN FVDVNGAKITAPTGFTQGNQVPMNSNTFKYTAAKALPATYTAGGKVYTFQGWYKGKTKPS TLNKTTTPTFNATFDGNDDMTAMYKEEIPTA Prediction of potential genes in microbial genomes Time: Sun May 15 13:25:53 2011 Seq name: gi|284795427|gb|ADDQ01000122.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont304.1, whole genome shotgun sequence Length of sequence - 572 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 75 - 570 152 ## COG3316 Transposase and inactivated derivatives Predicted protein(s) >gi|284795427|gb|ADDQ01000122.1| GENE 1 75 - 570 152 165 aa, chain + ## HITS:1 COG:pli0049 KEGG:ns NR:ns ## COG: pli0049 COG3316 # Protein_GI_number: 18450331 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Listeria innocua # 1 165 1 165 226 271 86.0 5e-73 MTQFKGKQFQKDVIIVAVGYYLRYNLSYREVQEILYDRGIHVCHTTIYRWVQEYGKILYQ IWKKKNKQSFYSWKMDETYIKIKGKWHYLYRAIDVDGLTLDIWLRKKRDTQAAYAFLKRL KNQFGEPKVLVTDKAPSIKSAFRKLQKNGLYITTEHRTIKYLNNL Prediction of potential genes in microbial genomes Time: Sun May 15 13:25:54 2011 Seq name: gi|284795426|gb|ADDQ01000123.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont326.1, whole genome shotgun sequence Length of sequence - 1835 bp Number of predicted genes - 4, with homology - 2 Number of transcription units - 3, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 88 - 147 9.5 1 1 Tu 1 . + CDS 317 - 436 68 ## + Prom 477 - 536 1.9 2 2 Op 1 11/0.000 + CDS 572 - 847 100 ## COG2801 Transposase and inactivated derivatives + Prom 873 - 932 4.5 3 2 Op 2 . + CDS 953 - 1264 122 ## COG2801 Transposase and inactivated derivatives + Prom 1434 - 1493 6.5 4 3 Tu 1 . + CDS 1521 - 1610 74 ## Predicted protein(s) >gi|284795426|gb|ADDQ01000123.1| GENE 1 317 - 436 68 39 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKENIPVKTIMEELGIKNKTQIDTWWRWGIVMARIIIV >gi|284795426|gb|ADDQ01000123.1| GENE 2 572 - 847 100 91 aa, chain + ## HITS:1 COG:SA0063 KEGG:ns NR:ns ## COG: SA0063 COG2801 # Protein_GI_number: 15925770 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 1 91 1 91 117 62 39.0 1e-10 MEPEVFVELVKRMKGKLPITALCQLFGISRATYYRWTHRKDLGKLTPLEEAVRRLCFQHK FRYGYRKITALINQEYKVNKNTVQKIMRKYH >gi|284795426|gb|ADDQ01000123.1| GENE 3 953 - 1264 122 103 aa, chain + ## HITS:1 COG:L0432 KEGG:ns NR:ns ## COG: L0432 COG2801 # Protein_GI_number: 15672069 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 3 102 126 230 279 83 42.0 1e-16 MVTDITYLPFGKKQLYLSSIMDLYNGEIIAYTIGDKQDTDFVLDTFDQLPQTTDCLLHSD QGSVYTSFDYQNQIKKGITMSSSRKGTPSDNACIESFHASLKS >gi|284795426|gb|ADDQ01000123.1| GENE 4 1521 - 1610 74 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNILFLSICLFYIATILTGVYHLRNNKKK Prediction of potential genes in microbial genomes Time: Sun May 15 13:26:02 2011 Seq name: gi|284795425|gb|ADDQ01000124.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont411.1, whole genome shotgun sequence Length of sequence - 641 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 127 81 ## gi|58616128|ref|YP_195764.1| PrgP 2 1 Op 2 . + CDS 105 - 380 308 ## LSEI_A17 PrgO-like protein for plasmid replication + Term 436 - 496 19.1 Predicted protein(s) >gi|284795425|gb|ADDQ01000124.1| GENE 1 2 - 127 81 41 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|58616128|ref|YP_195764.1| ## NR: gi|58616128|ref|YP_195764.1| PrgP [Enterococcus faecalis] # 1 41 269 309 309 82 100.0 1e-14 YYESHGDIVGFDYTLKYADSMANKILSKGKEIEINGIVTNE >gi|284795425|gb|ADDQ01000124.1| GENE 2 105 - 380 308 91 aa, chain + ## HITS:1 COG:no KEGG:LSEI_A17 NR:ns ## KEGG: LSEI_A17 # Name: not_defined # Def: PrgO-like protein for plasmid replication # Organism: L.casei # Pathway: not_defined # 1 90 1 91 92 63 41.0 2e-09 MALLPTNKEKKKIGAADIEIADDINVELGKSKYTAKDRRPVQVDPPVLKTIRDLSYAKDK PMYDIVALAMDALIDTLSEEERNIYNRRIKD Prediction of potential genes in microbial genomes Time: Sun May 15 13:26:18 2011 Seq name: gi|284795424|gb|ADDQ01000125.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont423.1, whole genome shotgun sequence Length of sequence - 34873 bp Number of predicted genes - 31, with homology - 30 Number of transcription units - 13, operones - 11 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 137 - 196 6.4 1 1 Op 1 7/0.000 + CDS 225 - 1109 962 ## COG1624 Uncharacterized conserved protein 2 1 Op 2 6/0.000 + CDS 1106 - 2269 1291 ## COG4856 Uncharacterized protein conserved in bacteria 3 1 Op 3 . + CDS 2262 - 3617 1858 ## COG1109 Phosphomannomutase + Term 3628 - 3683 17.6 + Prom 3744 - 3803 7.8 4 2 Op 1 3/0.000 + CDS 3847 - 4398 446 ## COG4720 Predicted membrane protein + Prom 4407 - 4466 1.9 5 2 Op 2 34/0.000 + CDS 4499 - 6205 278 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 6 2 Op 3 . + CDS 6217 - 7035 920 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters + Term 7088 - 7139 6.1 + Prom 7359 - 7418 5.4 7 3 Tu 1 . + CDS 7478 - 9286 2192 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains + Term 9335 - 9388 15.1 + Prom 9423 - 9482 7.7 8 4 Op 1 . + CDS 9555 - 10835 1303 ## COG2348 Uncharacterized protein involved in methicillin resistance 9 4 Op 2 . + CDS 10883 - 11173 495 ## EF2149 hypothetical protein + Term 11230 - 11258 -0.9 10 4 Op 3 . + CDS 11349 - 12314 1050 ## EF2148 hypothetical protein + Term 12319 - 12359 8.1 - Term 12307 - 12347 8.1 11 5 Op 1 . - CDS 12402 - 12581 174 ## EF2147 hypothetical protein - Prom 12612 - 12671 6.8 12 5 Op 2 . - CDS 12795 - 14285 948 ## EF2146 hypothetical protein - Prom 14315 - 14374 9.8 - TRNA 14443 - 14515 79.5 # Thr GGT 0 0 + Prom 15552 - 15611 3.2 13 6 Op 1 32/0.000 + CDS 15641 - 16711 1019 ## COG1135 ABC-type metal ion transport system, ATPase component 14 6 Op 2 22/0.000 + CDS 16730 - 17410 913 ## COG2011 ABC-type metal ion transport system, permease component 15 6 Op 3 . + CDS 17430 - 18263 1083 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen 16 6 Op 4 . + CDS 18278 - 19471 1667 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase + Term 19481 - 19523 4.0 + Prom 19507 - 19566 3.3 17 7 Op 1 . + CDS 19586 - 19693 126 ## + Term 19694 - 19738 -0.7 18 7 Op 2 . + CDS 19841 - 21379 1647 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains + Term 21381 - 21438 17.0 - Term 21368 - 21425 17.0 19 8 Op 1 12/0.000 - CDS 21434 - 22360 1268 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin 20 8 Op 2 42/0.000 - CDS 22347 - 23216 909 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 21 8 Op 3 . - CDS 23213 - 23962 189 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 23989 - 24048 11.1 + Prom 23942 - 24001 7.0 22 9 Op 1 2/0.000 + CDS 24175 - 25149 1254 ## COG0462 Phosphoribosylpyrophosphate synthetase + Term 25166 - 25217 9.4 + Prom 25221 - 25280 3.9 23 9 Op 2 . + CDS 25306 - 26451 1203 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 24 9 Op 3 . + CDS 26519 - 26863 419 ## EF2071 hypothetical protein + Term 26870 - 26926 11.3 + Prom 26964 - 27023 5.9 25 10 Tu 1 . + CDS 27089 - 28213 1388 ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain + Term 28259 - 28317 13.1 26 11 Op 1 3/0.000 - CDS 28400 - 29632 1182 ## COG0477 Permeases of the major facilitator superfamily 27 11 Op 2 . - CDS 29649 - 30164 595 ## COG1881 Phospholipid-binding protein - Prom 30199 - 30258 8.3 + Prom 30204 - 30263 6.4 28 12 Op 1 . + CDS 30297 - 30866 768 ## COG1309 Transcriptional regulator + Prom 30881 - 30940 4.7 29 12 Op 2 . + CDS 30964 - 31329 319 ## COG4699 Uncharacterized protein conserved in bacteria + Term 31337 - 31387 5.6 + Prom 31373 - 31432 4.8 30 13 Op 1 . + CDS 31460 - 33541 2195 ## COG0550 Topoisomerase IA + Prom 33547 - 33606 3.3 31 13 Op 2 . + CDS 33626 - 34489 849 ## COG3708 Uncharacterized protein conserved in bacteria + Term 34496 - 34529 4.7 Predicted protein(s) >gi|284795424|gb|ADDQ01000125.1| GENE 1 225 - 1109 962 294 aa, chain + ## HITS:1 COG:BS_ybbP KEGG:ns NR:ns ## COG: BS_ybbP COG1624 # Protein_GI_number: 16077243 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 30 268 14 253 273 291 60.0 9e-79 MSFQLNQLLDLNYWQQVISTDFLSKDFVINIIDILVVWYLVYKLIMLVRGTKAVQLLKGV AVFIIIRILSEIIGLHTLSWLMNQVIMYGVIAAVVIFQPEVRRGLEHLGRSSFFRPNKGA QQEDERIIQAFDKAIQYMSKRKIGALITIERNTGLDEYIETGIDLDADITGELLINIFIP NTPLHDGAVIIKNEKIAVASAYLPLSESNLIPKEFGTRHRAAVGISEVSDAITIVVSEET GDVSLTLNNELIPGLTQEEYLTILRKELISESSEDKKSALQHFIDDVTKGVKRK >gi|284795424|gb|ADDQ01000125.1| GENE 2 1106 - 2269 1291 387 aa, chain + ## HITS:1 COG:SPy1037 KEGG:ns NR:ns ## COG: SPy1037 COG4856 # Protein_GI_number: 15675034 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 2 312 3 314 318 146 33.0 6e-35 MRKASQKSWFNGLLSLLFALLLFFNANATGNNPSNSGSSQTYSETLNNIPVQVQYDKDKY YVSGFEESVNVHLRSANRIQLNMESNADTRNFQVVADLTKLPLGTSEVPLTVRGLSSAVT AEIEPKTVTVTIEKRVTKKFDVEAQLSDNIEKEGYKVKNISVDPKTVEVTTGEETAKAID KVIAPVSSAKQTIDTIKQTVNVQALDAKGQVLSIENPAPQVKVTVGLTAPTKDVPLNVSM TGTPPAGIAHYNYSLSTYQVRVSGPQSILDTLESIEVPVDISDIRKETKQSVTIPVNGEY VVTPDEVDVSLSPVYNQQQSSNTNETSGEPASSTTAGSGSQAVQPSTSSQVESNTSETTS EGSTVESTTAGSTENTENQVTKENQNG >gi|284795424|gb|ADDQ01000125.1| GENE 3 2262 - 3617 1858 451 aa, chain + ## HITS:1 COG:SPy1038 KEGG:ns NR:ns ## COG: SPy1038 COG1109 # Protein_GI_number: 15675035 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Streptococcus pyogenes M1 GAS # 1 451 1 450 451 606 71.0 1e-173 MGKYFGTDGVRGIANKELTPELAFKLGRYGGYVLSQHEDSSRKPRVLVGRDTRISGEMLE QALIAGLLSVGIEVFQLGVISTPGVAYLTRLQKASAGVMISASHNPAEDNGIKFFGADGF KLVDDQEAEIEALLDAEEDTLPRPSAEGLGSLDEFPEGLLKYSQFLVQSIPGDLADMTVC LDAANGATATAVNRVFADLETDFYTMGTSPNGLNINDGVGSTHPEALAEMVVEKGADAGL AFDGDGDRIIAVDELGRIIDGDKIMYICAKYLAEKKRLKKDTIVTTVMSNLGFHKAVEEI GLKDVVTQVGDRYVVEEMRKNDYNFGGEQSGHMIFLDYNTTGDGMLSGIQLLNVMKQTGK KLSELADEVTIYPQKLVNIRVTDKNGAMEVPAIKAVVEQAEAEMNGEGRILVRPSGTEPL LRVMAEAPTQEKVDYYVDKIAEVVRAEIGVE >gi|284795424|gb|ADDQ01000125.1| GENE 4 3847 - 4398 446 183 aa, chain + ## HITS:1 COG:SA2477 KEGG:ns NR:ns ## COG: SA2477 COG4720 # Protein_GI_number: 15928271 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 2 183 3 184 184 234 67.0 4e-62 MKEKMSVKTIVAIGIGSAVFVILGRFVVIPTGIPNTNLETSYPFLALMSVVFGPVAGGLI GLIGHTLKDFTTYGSAWWSWIICSGIIGIIFGFAGRKMDLQHGEFTTNDMVRFNIFQAFG NIVVWGLIAPSLDILIYSEPASKVFTQGVFATVSNIVAVGIIGTLLMKAYASTRTKKGSL SKD >gi|284795424|gb|ADDQ01000125.1| GENE 5 4499 - 6205 278 568 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 305 556 134 384 398 111 31 5e-24 MKKPIITFNNFSFQYHSQSEPTLKGIQLTIYEGEKVLIVGPSGSGKSTLAQCINGLIPNI YEGEIQGTATVAGKNIQETSLFDLSFDVGTVLQDTDGQFIGLTVAEDIAFALENDAVEQA EMKKAVHKWSEIVELNQLLQHRPQDLSGGQKQRVSMAGVLINQSKILLFDEPLANLDPRA GQETMTLIDTIQQETKATVLIIEHRLEDVLCESVDRIIVMNEGAIISDTTPDELLRQDTL TQQGIREPLYVTAMKYAGIDLTQVSHLDKLAEVSGETVLPKMTQWSVQPSSVSAVKGAEL LRLEQVSYQYDRHGEKVLDDFSVTIHHGEMISIVGKNGAGKSTLSKIICGFITPQSGKIL WEGQDFSNYSIKERADKIGYVMQNPNQMISKKMIFEEVALGLVLRDVPQAEIEERVTNIL HICGLYPFRNWPISALSFGQKKRVTIASILVLEPELLILDEPTAGQDFKHYTEMMTFLEE LNRLGVTILMITHDMHLMLEYTTRALVVCDGRLLADATPVAVLTDEKLIQAASLKETSLF TFAKALGLENPLLFTEKFVAYDREVRFG >gi|284795424|gb|ADDQ01000125.1| GENE 6 6217 - 7035 920 272 aa, chain + ## HITS:1 COG:SA2475 KEGG:ns NR:ns ## COG: SA2475 COG0619 # Protein_GI_number: 15928269 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Staphylococcus aureus N315 # 2 272 7 277 277 309 58.0 3e-84 MLGYHPDSTWIHRLNGTSKLVFLIVVSVACMTTYDTRYLLGMSVVSLVLLKLSNIKWHQI SFVIKFIAIFSLLNILTVYLFAPEYGVDLYQSRTVIWEGIGRFTLTQEELFYEFNLVLKY FCTIPLALIFLLTTNPSEFASSLNRIGVSYRISYAVALAIRYIPDIQEDFFNISLAQQAR GYEMSKKGRLGQRIKGVAQIVLPLILSSLDRIETVSTAMELRRFGQKKNRTWYAQQPFHL RDFSVMILALCLLGISFWLFHVNGGRFYNPFQ >gi|284795424|gb|ADDQ01000125.1| GENE 7 7478 - 9286 2192 602 aa, chain + ## HITS:1 COG:SP0266 KEGG:ns NR:ns ## COG: SP0266 COG0449 # Protein_GI_number: 15900200 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Streptococcus pneumoniae TIGR4 # 1 602 1 602 602 743 63.0 0 MCGIVGMIGKENVTESLIQGLTKLEYRGYDSAGICVNDQSQQPHVVKAVGGIADLAAKLT PEIDGTVGIGHTRWATHGEPTVANAHPHVSSDQRFALVHNGVIENFEELKEQFLSGAHLI GDTDTEIVVQLIAHFAENGFSTKDAFKAALAEIKGSYAFALMDKMDPNTIYVAKNKSPLL IGLGEGFNVICSDAMAMIKETNQFVEIVDGEIVTVTADKVVIETPEGQVINREPFEAQLD LNDIEKGTYPFYMLKEIDEQPAVMRKIVQAYTQGEKVTFDEALLEKINQCDRIYIIACGT SYNAGWVGKSLIETIASIPVEVHLSSEFGYNMPILSEKPFFIFLSQSGETADSRQVLVQV NELGHPSLTLTNVAGSTLSREADDTLLLHAGPEIAVASTKAYTAQIAVLAILAKAIGEER QTLAAVSFDVAHELSVVAAVMETLIDEKQQMKALVEDYLTYTRNAFYIGRGVDYYVSMEA ALKLKEISYIQAEGFAAGELKHGTIALIEEGTPVIGIVTDAKVAAHTRGNLKEVESRGAR NIVIALESLAKPQDQLIIPDVHPLLSALVSIVPGQLLAYYATLQRGYDVDKPRNLAKSVT VE >gi|284795424|gb|ADDQ01000125.1| GENE 8 9555 - 10835 1303 426 aa, chain + ## HITS:1 COG:SP0616 KEGG:ns NR:ns ## COG: SP0616 COG2348 # Protein_GI_number: 15900524 # Func_class: V Defense mechanisms # Function: Uncharacterized protein involved in methicillin resistance # Organism: Streptococcus pneumoniae TIGR4 # 18 422 3 407 410 276 36.0 6e-74 MLIYLTKKDCELFDMDQFSTLTEQEFTTFAMTHPAGNFLETPEMKHLLERRGWHCEYVGV KREGQLIAACILSKKKVKIGYAFDIDGGILMDYTDKKCVEAFFTGLKKYVKKNDGLYLTF TPNKQICLRDFNGGEVEKVNQETFDYFTSIGFEHQGFDVHNFDGAPRWLFVKDMAGLTEE DLWKSYGKDAKYDIKKTWEYGVTTRELRYEELPLFKKLTEETSARRNFEDKDLAYYQAVY EEFGERAKFMVAELNFATYLENLHEKLRKLQETLNEVNEALIANPKSRKKNNQKREFEDE VRTVRKRIDEAKEMKTSDEPEILAGALFIVHPQEVVYLFSGTYEKYKQYYAPYLIQHKML TYTVENNIPKYNFYGVDGVFDGSDGVLKFKQSFGGHVEELMGNFHWKAKPMKYALYHALK TIKEKV >gi|284795424|gb|ADDQ01000125.1| GENE 9 10883 - 11173 495 96 aa, chain + ## HITS:1 COG:no KEGG:EF2149 NR:ns ## KEGG: EF2149 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 96 1 96 96 147 98.0 1e-34 MENQVEVMTYAQLKEIMQALEANEAITEDTKVFIDTGWDSVQEVAPDAVSIEKVAKFTVA DVLTNESFAGYSLEEKAEKMNAEGDLETAIIIRNLY >gi|284795424|gb|ADDQ01000125.1| GENE 10 11349 - 12314 1050 321 aa, chain + ## HITS:1 COG:no KEGG:EF2148 NR:ns ## KEGG: EF2148 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 321 1 321 321 500 99.0 1e-140 MSTIHEFPKNYERFIAQGEEALVEHNQIAALENFQQAYQLQQTPPVNQKIVQLLLEMGEA DEALALAEAFQETYFENLETAAIYMQIYSQSRRFIEGYILLKQLLQTKKITLAQQKTLEQ QLMQVEEAYQQLETQQIQAIKRNLLVSDQLPVYQQLANIKTSLYLPKPVFVEVAKDLVMN QALSYFAREWFIEELALLQFSEPLTFLWYDNQPQTVLLEGKTGPLNTPIYSEIYTELRNR LENDDPIMLQHLEEEIRLHLAYLYPLAEKVISDPTIWVLGYLATYYPEYIEKELTEAKGH QIDAVQKVQQAIRTAFTQIML >gi|284795424|gb|ADDQ01000125.1| GENE 11 12402 - 12581 174 59 aa, chain - ## HITS:1 COG:no KEGG:EF2147 NR:ns ## KEGG: EF2147 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 59 5 63 63 87 100.0 1e-16 MRTRQKKLFLFSMILWLVEFLITRISDSFPGATPLFVVICLIQGILFTYFCLAFFYYPQ >gi|284795424|gb|ADDQ01000125.1| GENE 12 12795 - 14285 948 496 aa, chain - ## HITS:1 COG:no KEGG:EF2146 NR:ns ## KEGG: EF2146 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 496 1 496 496 860 99.0 0 MMKQLPTESKKFDLKNWCIENKAYLLLIILIYQVAVLSIGIINFPYLDDNARQVAGMTDF GTTYARWGSEFLSWFVQGSRHLTDLGLTTPILTGLILSLTSILAIYIINDQKISWGSSLV ATLIGLNPWFLQCLSFRFDSPYMALSIFCSFLPFYWWQRNSFTFFLVSVFSLFVMFNTYQ ASSGIYIVIVLFLTFKQLLAGENFIALCKKVALAAIAYLLSIVSYLIELKFVPSATNNIG GSQALPSLHDIPSVAYQNSYHYFSELLNQSNRLWLLLLLLLLVLFFISHLANSKINLGLS FLYCILYLGLASLLSFGIFIVYSRNIAGDAPRYIYGFAVFVTISMLSLFNNRQVKAIYLT SLLVASLLSYYILSFVLVYSSTLNYQKEAFNRQAAVLTDDLKNVVTNERKKVYLNTFFKN STVYANTSRNYPILSKIVPPNDGLYFPNYVWFNTSSNLGVEMAPLTDTDMSKNQKVVSNH FYDIYTNNKEIFVFMK >gi|284795424|gb|ADDQ01000125.1| GENE 13 15641 - 16711 1019 356 aa, chain + ## HITS:1 COG:SPy0320 KEGG:ns NR:ns ## COG: SPy0320 COG1135 # Protein_GI_number: 15674484 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Streptococcus pyogenes M1 GAS # 1 342 5 351 354 362 55.0 1e-100 MIELKNISVTFQQKKQEIQAVQDVSLTIDKGDIYGIVGYSGAGKSTLVRVINLLQRPTAG TVIINKENILTFSKKELRQQRKKIGMIFQHFNLMKERTIFSNIDFSLKYSGLSKSERRQK ISHLLELVGLSEKRDAYPSQLSGGQKQRVAIARALANDPEILLCDEATSALDPKTTGQIL ALLKKLNQELNLTIVLITHEMQVVKEICNKVAVMENGCVVESNDIVSIFSQPQQPLTKDF IRTATHIDQALTTILEHPKLADLDKNQELIEFSYVGDQTNEPLIAQLYSQYQVYTNILYG NVEIVQNVPIGHLIVVLSGDEAQRQQALAYLAKQGVRTNVLKTYQQTKQKQNLQVI >gi|284795424|gb|ADDQ01000125.1| GENE 14 16730 - 17410 913 226 aa, chain + ## HITS:1 COG:L122401 KEGG:ns NR:ns ## COG: L122401 COG2011 # Protein_GI_number: 15672305 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Lactococcus lactis # 1 226 1 230 231 182 53.0 5e-46 MYQLFEKYFPNVVQLKQEFLQSTWETVYMVFWTALIAGVLGVLLGVVLVSTGPSGVLKNP PLYSVLEKIINVCRSIPFIIMLALIQPLTRILAGTTIGTTAALVPLVIGVIPFFARQIEN ALLEVDPGVIEAAEAMGTSPLGIIFRVYLIEGLPSIIRVSAVTIINLIGLTAMAGAIGAG GLGNLAITRGYNRFQTDVTFMATLIILIMVFISQAISNQLIKKTSH >gi|284795424|gb|ADDQ01000125.1| GENE 15 17430 - 18263 1083 277 aa, chain + ## HITS:1 COG:L118475 KEGG:ns NR:ns ## COG: L118475 COG1464 # Protein_GI_number: 15672301 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Lactococcus lactis # 26 271 32 281 286 212 50.0 6e-55 MKKFSKLIGLIGVLAFTIAGCASGAAKDTKTETVKLGVVGTKNDEWESVKDRLKKKNIDL QLVEFTDYTQPNAALAEKEIDLNAFQHQIFLDNYNKEHGTKLVSIGNTVNAPLGIYANKL KDITKIKDGGEIAIPNDPTNGGRALILLQTAGLIKVDPAKQQLPTVSDITENKRQLKITE LDATQTARALQDVDASVINSGMAVDAGYTPDKDAIFLEPVNEKAKPYVNIIVAREEDQEN KLYQKVVEEYQQEETKKVIAETSKGANVPAWETFGKK >gi|284795424|gb|ADDQ01000125.1| GENE 16 18278 - 19471 1667 397 aa, chain + ## HITS:1 COG:lin0542 KEGG:ns NR:ns ## COG: lin0542 COG1473 # Protein_GI_number: 16799617 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Listeria innocua # 9 397 5 390 393 266 38.0 6e-71 MSTTTIQTIQEAIATEKEWIIHLRRHFHQYPEASLKEYETIKRIKEELLALAIPFVEVGG TGVLATIEGGLGAGKTILLRADIDALELPDATGTAYASKNPGLNHACGHDGHAAALLGAA KVLKKHQDTFSGTIKLAFQPAEEIGAGARQFVEGNYLEAIDQVFGIHLDSSVPVGKLVAT KGATNASCDIFKIEVSGQSSHVAQPQNGRDAVLAAASIVVELQKIVAREIDPLDSVVVGI GVLQAGTRYNIVANQATIEGTVRTFSQETRQFVLQRVEEIAHEIAQSHRTEIADFSVYAA ANPLINEEQATNRAQQVASEIVGFENVVTDHPKSLGADDFADYLAVIPGIYGRVGSRNPE NPATHFGHHHEQFDIDERALLLAAEYHVRYALNYLSE >gi|284795424|gb|ADDQ01000125.1| GENE 17 19586 - 19693 126 35 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFFVLTDKLTRKVAPDSLRTDEALLWSRAINFFIA >gi|284795424|gb|ADDQ01000125.1| GENE 18 19841 - 21379 1647 512 aa, chain + ## HITS:1 COG:CAC3339 KEGG:ns NR:ns ## COG: CAC3339 COG0488 # Protein_GI_number: 15896582 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Clostridium acetobutylicum # 1 509 1 512 518 429 44.0 1e-120 MSILTIEHLTHRFGEKVLYEEASLQVNKGDHLGLTGQNGVGKSTLIKILTGEVLPDEGTI QWQKNCKIGYLDQHVSVEQSLTMVDFLKQAFQELFDKEAKLTKLYEEYSQTASEKLLEQA GKLQTDLDESNFYQIDTIIQDLANGLGLQAIGLDKKLGELSGGQRSKVILAKLLLEAPDV LLLDEPTNYLDDTHIQWLVRYLNNFEGSFLLVSHDYQFLNEVTNCIADIEFGKLTKYTGN VEKSFAQKEQNKQTYLKQYQAQQEKIEKMEAYIRKYKAGNRATMAKSRQKQLDRLERLTP PGSLTKPAIEFPYQGLVATQALTTQKLVVGYREPLLEPLDLMVHVGEKVALKGFNGIGKS TLIKTLTKVIPSLDGEFHYPLNTKIAYFTQDLAWPNEQLTPLDYLSDRFPDTTIKERRSH LARAGLPDKLAMQSLALLSGGEQTKVKLAELMMQTSNLLFLDEPTNHIDEAAKKSLQEAI HVYPGTVFLVSHEADFYEEIVDRVIDIEELVK >gi|284795424|gb|ADDQ01000125.1| GENE 19 21434 - 22360 1268 308 aa, chain - ## HITS:1 COG:lin1961 KEGG:ns NR:ns ## COG: lin1961 COG0803 # Protein_GI_number: 16801027 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Listeria innocua # 15 305 14 308 310 347 61.0 2e-95 MKKFSLFFLTLLAGLTLAACGNQAAEKKEKLAIVTTNSILSDLVKNVGQDKIELHSIVPI GTDPHEYEPLPEDIAKASEADILFFNGLNLETGGNGWFNKLMKTAKKVENKDYFSTSKNV TPQYLTSAGQEQTEDPHAWLDIENGIKYVENIRDVLVEKDPKNKDFYTENAKNYTEKLSK LHEEAKAKFADIPDDKKLLVTSEGAFKYFSKAYDLNAAYIWEINTESQGTPEQMTTIIDT IKKSKAPVLFVETSVDKRSMERVSKEVKRPIYDTLFTDSLAKEGTEGDTYYSMMNWNLTK IHDGLMSK >gi|284795424|gb|ADDQ01000125.1| GENE 20 22347 - 23216 909 289 aa, chain - ## HITS:1 COG:lin1962 KEGG:ns NR:ns ## COG: lin1962 COG1108 # Protein_GI_number: 16801028 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Listeria innocua # 5 282 3 280 280 285 67.0 7e-77 MIAAFIDGLFRYQFLQNALLTSVIVGLISGVIGSFIILRGMSLMGDAISHAVLPGVAVSY MFGFNYIFGASIFGLLAALSIGFITQKSPLKNDTAIGVVFSSFFALGIIFISFAKSSTDL YHILFGNVLAVADTDILITCVVGVIVLIFVALFYKELQLTSFDPTMAQAYGLNIQFFHYA LMFLLTLVAVSSLQTVGTILVIAMLITPAATAYLLTNHLPTMIGLASTFGILSSVIGLFF SYSYNLASGATIVLTAALFFLLAFFFSPKKGLVFVNREKEMEESTNEKI >gi|284795424|gb|ADDQ01000125.1| GENE 21 23213 - 23962 189 249 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 22 226 17 227 245 77 28 1e-13 MRKSFNLAVQALTVQYQGRTALNNIHVTIPSGKITGIIGPNGAGKSTFIKGLLGLIKTKE RDVLLNNQAIDQQKTTIAYVEQRSALDLSFPISVFETVLLGTYPNLGLLKRPGKKEKQAA MAALKMVQLEDYAQHQIGELSGGQLQRVFIARVLAQGAEVIFLDEPFVGIDMSSEKVIMD ILKSLKNQGKMIIIVHHDLHKVSHYFDELIVLKNRLIAAGPVEQTFTAETLQEAYGDLLG DLLIQGVAK >gi|284795424|gb|ADDQ01000125.1| GENE 22 24175 - 25149 1254 324 aa, chain + ## HITS:1 COG:SPy1123 KEGG:ns NR:ns ## COG: SPy1123 COG0462 # Protein_GI_number: 15675103 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 324 1 323 326 416 61.0 1e-116 MTENYQDDTLRIFSLNANRPLAEKIAASVGTELGKSTVRQFSDGEIQINIEESIRGDHVY IIQATNAPVNDHLMELLILIDALKRASAKTINVILPYYGYARQDRTAKPREPITAKLVAN MLVEAGATRLLTLDLHTVQVQGFFDIPVDNLFTMPLFAHYYRQQALVGEEIVIVSPKNSG VQRARSLSEYLDATLAIVDHEEIDGVRQEGYVIGNVAGKKCILVDDILNTGQTLATAAEV LMKNGAQEVYACASHGLLSEGAKATLENAPIKEISITDSVYTTADRQPATLNIISCAELM GEALLRIHENKPMSPLFRLEPKGE >gi|284795424|gb|ADDQ01000125.1| GENE 23 25306 - 26451 1203 381 aa, chain + ## HITS:1 COG:lin1548 KEGG:ns NR:ns ## COG: lin1548 COG1104 # Protein_GI_number: 16800616 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Listeria innocua # 4 381 5 381 382 408 56.0 1e-113 MEPIYLDHAATTPLHPTVIQAMTENMQTTFGNPSSIHQFGRKAHGLLEEVRQTIAESLQA KPHEIIFNSGGTEGDNTAILAVAFSRQKEGKHIITTAIEHPAVLRTMEYLETLGFEVTYL PVNENGQISMDQFKKSLREETILVSMMYGNNEIGNRLPIAEVGAILKNHSAIFHTDAVQA YGSEVILPHELGIDLLSISAHKINGPKGVGFLFKSDAIQLPPLLHGGEQEEKRRAGTENL AGIIGMGTAVSLLTSAEKQARKTAYQSFQTIILKALEEANIDFSINGEPTNRLAHVLNLH LKGIPSDLLLMHLDLRGIAISTGSACTAGTVDPSHVLTAMYGENSSAIKESIRISFGYGN TPEEIATFSEVLVAVIQQLKK >gi|284795424|gb|ADDQ01000125.1| GENE 24 26519 - 26863 419 114 aa, chain + ## HITS:1 COG:no KEGG:EF2071 NR:ns ## KEGG: EF2071 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 114 1 114 114 208 100.0 4e-53 MAFTTTAAVEGSTVFYKVHPSAKRYTLKDNGFTETKSGNFQLIRSLDPTPQRNEGFKLKI TITADLKELKMSITTANGLKPMNIFKNEQHEMSKEKYFFLMDGLISRGVLEKVE >gi|284795424|gb|ADDQ01000125.1| GENE 25 27089 - 28213 1388 374 aa, chain + ## HITS:1 COG:SPy2188 KEGG:ns NR:ns ## COG: SPy2188 COG0482 # Protein_GI_number: 15675922 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Streptococcus pyogenes M1 GAS # 1 374 1 373 373 563 77.0 1e-160 MADNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCTATEDYKDVA KVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQLG ADYVATGHYAQVETDENGVVHMLRGIDNNKDQTYFLSQLSQTQLAKTMFPLGGMEKSEVR AIAERAGLATAKKKDSTGVCFIGEKNFKEFLSNYLPAKKGNMVTEDGEIKGQHDGLMYYT IGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVHFTVDTPM PKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVFYDGMECLGGGL IDRAYQDEKELQYV >gi|284795424|gb|ADDQ01000125.1| GENE 26 28400 - 29632 1182 410 aa, chain - ## HITS:1 COG:lin2884 KEGG:ns NR:ns ## COG: lin2884 COG0477 # Protein_GI_number: 16801944 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 16 396 4 384 402 420 55.0 1e-117 MYELIKSKIFRPRQPWEKNLLVLWFGTFMAGIGFSLVMPFMPLYINTLGTFTHQQLNFWS GITFSSTFLVTTIVSPWWGRLADRKGRKLMLLRASLGMAIVISLMGAVTSVYQLIGLRLL QGVFSGYISNATALVATGTPKEKSGQVLGTLATGSVTGTLLGPLLGGVTASIFGYRPTFF ITGTILLLVFVLSLVFVHEEFVPIEKNQAASGKQILKKLEHPHVILGMFITTLIIQASNN SISPIISLYIQQLLGGHGNVTLISGVIASIPGIATLIAAPRFGRLGDRIGSERILTIGLI LAIFVYLPMAFVQNVWQLAMLRFLVGISDACLLPAVQTLITRYSPSDAAGRIFSYNQSFQ ATGNVIGPMIGSSVSAAFGYRGVFISTSCLVLLNLLWVRRSTAELKKREK >gi|284795424|gb|ADDQ01000125.1| GENE 27 29649 - 30164 595 171 aa, chain - ## HITS:1 COG:BS_yxkA KEGG:ns NR:ns ## COG: BS_yxkA COG1881 # Protein_GI_number: 16080938 # Func_class: R General function prediction only # Function: Phospholipid-binding protein # Organism: Bacillus subtilis # 1 170 3 165 168 115 38.0 5e-26 MHITNRSHLADRYGKRTSAEFLLHERPILSFPISLAAIPKEARYLSWELIDYDTIPLIGF PFIHWLAANVPVTNEIPEDFSRTALKPTIQGKNSLASPLGKQMIPALATETLPELTERYL GLSPRSGVHTYTLYVYATKNPLNLKEGFFANELHQALNDQLLAKAKFEFLY >gi|284795424|gb|ADDQ01000125.1| GENE 28 30297 - 30866 768 189 aa, chain + ## HITS:1 COG:CAP0028 KEGG:ns NR:ns ## COG: CAP0028 COG1309 # Protein_GI_number: 15004732 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 3 185 2 183 187 171 50.0 8e-43 MAKKRNLTKAKILESARNLAEELGVQQLTFQNLAVDLGIKYPSLYNHFKNIAEVKNALVD LLIQELNDALRRALVGKSGAEAIRIYAETYQQFAFENSAVYELLISVPKTQNQQLIEGIH ETNQIILQLLAFYPFNNEERLHKSRELRSLIHGYITLRFLGYFQREEATPEESYRRMIED FIASLEVAG >gi|284795424|gb|ADDQ01000125.1| GENE 29 30964 - 31329 319 121 aa, chain + ## HITS:1 COG:L100735 KEGG:ns NR:ns ## COG: L100735 COG4699 # Protein_GI_number: 15673831 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 1 119 1 119 122 99 43.0 1e-21 MYQVITMYGDNEPWWFFDDWQEDIVQEKTFDNLTDAETYYVEVWQKLSQNYTYVNTKPNY LTAFWNDGEERWCEECDEDLQQYFGLALLENHHAVTFENKAEFTTISNHFGKTKFCKRKV I >gi|284795424|gb|ADDQ01000125.1| GENE 30 31460 - 33541 2195 693 aa, chain + ## HITS:1 COG:CAC2947_1 KEGG:ns NR:ns ## COG: CAC2947_1 COG0550 # Protein_GI_number: 15896200 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Clostridium acetobutylicum # 2 584 1 615 618 459 42.0 1e-129 MVAKQLIIAEKPSVAKDLSRVLGANQKNKNYYEGPNVIVTWALGHLLGLKMPEDLNKEWQ TWQMETLPMIPKNLGIKPLPKTGHQLKAIKQLANRKDVSEAVIATDAGREGELVARWILE YVRFNKPVKRLWISSQTDKAIKDGFKKIRPAKDYDNLYYSALARAKADWLVGLNVTRALT VKYQDNLSAGRVQTPTLAMVRQQEKTIEQFKPQTYFTISLTVESEKAKMTQKNPYALKER QEAEQLVKELSKQKGLVTDIQEKVKTENAPLPYDLTEIQREANQRFQFSAKKTLSLVQSL YETHKIVSYPRTDSKYLTTDMKGTMKERLQAIADFSPEVKGYLKNGAVVKQQKVFQNAKV TDHHGLIPTEQRPRYEKLSNDEQKIYQMIVQRFLGLFAEPNQTKQTKVTVAFGKETFVFH QNKVVVAGWKTTAEQPLSIVQWQKGMTVAPNFTINKELTSPPKPLTEGTLLGKMEKHSLG TPATRAEIIEKLIKSELMERTNSGLSVSAKGKQLLDLVNPSLVTPELTEKWEKSLEAISS GQQKSQLFLKDIEEDTKKLVREIKQSEKKYQDFSITQKKCPDCGSNLREKNTKDGKIYVC TNQECSYRRRKDPKVSNHRCPQCHKKMVIIEGKNGRSFKCKFCSITEKIPDKKERKQKMT KHEERRLMKKYSQPDEPEESALAQALKAAMNQE >gi|284795424|gb|ADDQ01000125.1| GENE 31 33626 - 34489 849 287 aa, chain + ## HITS:1 COG:BS_ydeE_2 KEGG:ns NR:ns ## COG: BS_ydeE_2 COG3708 # Protein_GI_number: 16077584 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 124 284 1 161 163 132 39.0 9e-31 MLANLNQAMDYIEEHLTEEVSFDELAKKTGISVYHFKRTFSFITGMSLAEYIKKRRLAEA NLALLAGEKVTDVAFKYGYQSIEGFSRAFRDWSGQAPSEVMKTQIQKTFPKFSFYIDIKG GQSMDVKLIEKPAFQIVGVSQKVPLQYQGENQAIMELAQRITPQQRAEMHTFDDIYPHQV VNASFDFQEGRTTEGGEMTHMIGFATSQENTYEDLEQLSVPAHTWAVFPNEGPFPQTLQE TWARIFSEWLPSSGYQVVAAPEISFTQYQGPAEAKYSEIWLAVTATK Prediction of potential genes in microbial genomes Time: Sun May 15 13:26:43 2011 Seq name: gi|284795423|gb|ADDQ01000126.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont423.2, whole genome shotgun sequence Length of sequence - 9877 bp Number of predicted genes - 9, with homology - 7 Number of transcription units - 3, operones - 2 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 32 - 91 4.8 1 1 Op 1 . + CDS 310 - 408 90 ## + Term 449 - 483 0.4 + Prom 417 - 476 5.1 2 1 Op 2 . + CDS 504 - 566 106 ## 3 1 Op 3 31/0.000 + CDS 568 - 1986 1627 ## COG1271 Cytochrome bd-type quinol oxidase, subunit 1 4 1 Op 4 5/0.000 + CDS 1983 - 2996 991 ## COG1294 Cytochrome bd-type quinol oxidase, subunit 2 5 1 Op 5 14/0.000 + CDS 3001 - 4734 165 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 6 1 Op 6 . + CDS 4734 - 6497 234 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P + Term 6503 - 6548 6.5 - Term 6485 - 6542 9.6 7 2 Tu 1 . - CDS 6577 - 7557 905 ## COG0142 Geranylgeranyl pyrophosphate synthase 8 3 Op 1 . + CDS 7679 - 8584 637 ## COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase 9 3 Op 2 . + CDS 8613 - 9824 1538 ## COG1252 NADH dehydrogenase, FAD-containing subunit Predicted protein(s) >gi|284795423|gb|ADDQ01000126.1| GENE 1 310 - 408 90 32 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIEEREEILGAPKKIVRNASVLFGFCLRKLYT >gi|284795423|gb|ADDQ01000126.1| GENE 2 504 - 566 106 20 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEMNNSGKLVSLCGGKSGRK >gi|284795423|gb|ADDQ01000126.1| GENE 3 568 - 1986 1627 472 aa, chain + ## HITS:1 COG:L107726 KEGG:ns NR:ns ## COG: L107726 COG1271 # Protein_GI_number: 15672686 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 1 # Organism: Lactococcus lactis # 1 446 1 451 491 543 60.0 1e-154 MFDIVTLARIQFAMTTVFHFFFVPFSIGLALVVAIMETMYVVKKEERYRKMAKFWGNIFL LSFAVGVVTGIIQEFQFGMNWSDYSRFVGDIFGAPLAVEALLAFFLESTFLGLWIFTWDK MNPKVHVTFIWLVVFGSMMSAFWILVANSFMQHPVGYVINNGRAEMVDFVAVISNPKVWY EFSHVIMGAFTLGGMAVAGMAAFQLLKKRDISFHKASMRIGLWVTLFGSIGVLLAGDLQM KALIEGQPMKFAAMEGAYEDSDDPAAWTLIAWADEREHKQVFGIDIPYMLSILSYNKLSG SVDGMDTVNKRLVEKYGDDKNYYPPVNTLFWSFRIMAGFGALMLLVAALGLFFTRKKKPS LYEKKWMLWIVALCTFAPFLANTTGWLVTELGRYPWTVYGLFTIEQSVSPNVSVASLITS NVIYFLLFAGLGSVMVYLVILELRKGPDYEAKKLAKENEPALDPFDKGVFGE >gi|284795423|gb|ADDQ01000126.1| GENE 4 1983 - 2996 991 337 aa, chain + ## HITS:1 COG:L109201 KEGG:ns NR:ns ## COG: L109201 COG1294 # Protein_GI_number: 15672687 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 2 # Organism: Lactococcus lactis # 1 330 1 331 331 357 61.0 2e-98 MSTLQLLWFVLIGVLFSGFFFLEGFDFGVGMAVQTLAHNDDEKDQVVATIGPVWDGNEVW LLTAGGAMFASFPYWYASLFSGYYLILFTILFGLIIRGVSFEFRHNMPEGKRRRMWNWTL SIGSFLVPFFFGILFISLVQGMPLDANGNMHAQFTDYFNLFSIVGGVALTLLCYLHGMNY IALKTEGPIRERARNYAEILYGVLYVGLVVFAVLMYFKTDFYEKNFAVTLILTLAIVVLT VIANVGVFKRKEMLAFLASGLTLVVLVALLFSGLFPRVMIGSEGFDLLIKDATSTPYTLK IMTWISLSILPFVLAYTAWSYYIFRKRISQTAVPEGY >gi|284795423|gb|ADDQ01000126.1| GENE 5 3001 - 4734 165 577 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 333 561 12 233 312 68 26 2e-11 MIDKDILQMPKIKKILVLLAGFSFLQAVFIIGQAFFLSKAIVGLWSGGHLNQQLQSILLF FIFYLGRHVITYFRERMLDTFSYERSKELREQLLTKIFRLGPNVVQKNGTGNMVTMALEG ISQTENYLQLILTKMMNMMIIPWIILAFVFTQDIRSGVTLLIVFPIIIIFMIVLGYAAQS KADKQYAAFQMLSNHFIDSLRGIDTLKLFGLSKKYAGSIYHTSERFRKATMSTLKIAILS TFALDFFTTLSVAVVAVFLGLSLLNGTILLFPALVTLILAPEFFLPIRDFSSDYHATLDG KNSFQAIQAVLALPEAEQTDVLTLDDWHQESQLSVTALNFSYEDATQEAIQSLQFSVDGR KKIGIIGASGSGKSTLINLLSGFLLPTEETSQLAINGQTIPHFLQKDWQKQILYIPQAPY IFQDTLANNIRFYTPEATDEAIQQAIQLVGLDELVKDLPEGIHTLIGESGRMLSGGQAQR VALARAFVDQKRHVLLFDEPTAHLDIETEVEMKERMLPLMNNHLVFFATHRLHWMEEMDY ILVMEKGQLVEQGTLAELIEKDGYYVQLMKQMRGGRQ >gi|284795423|gb|ADDQ01000126.1| GENE 6 4734 - 6497 234 587 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 312 568 91 354 398 94 27 2e-19 MEKQPTTKDVWKNDQWVRPFLKRYKKTLYFALLLGFLTFFSAGALMFTSGYLISRAASLP ENILLIYIPIVLTRAFGIGRPVFRYVERLTSHNWVLKMTSDLRLKLYNVLEKDAIFFKTK YRTGDILGLLSEDINHIQNLYLRTIFPTVIAWILYIFLVIALGFFSWWFALCMLLMLGVV VFLLPLVSVLVNGARQEKHKYAKNELYQTLTDNILGVSDWVFSQRGSEFVARYETDEANV RALDEKMKQFNRGRDFVLQLLFGVIAIAVLAWTSVRFPGNHGGAANWIGAFVLTVFPLID AFAPLPAAAQETTIYKDSIRRFNELPEGEDDSTEAPVQPNGTSLSIEHLSFAYENQEKKV LNDLSLTIPEKQKLAILGRSGSGKSTLASLIRGDLRPTSGEILLGNIPTEAFGETMTEYI GVMHQAPYLFRTTILNNIRIGREEASEAEVWAVLEKVGLKEMVAQLPEGLQTMVDEAGLR FSGGERHRLALARILLQDTPIVLLDEPTTGLDPITEQQLLETFFEALKDKTVIWITHHLQ GVTLMDQVIFIEDGQLEMSGTPEELLATNAHYQKLYRIDRGISSFEE >gi|284795423|gb|ADDQ01000126.1| GENE 7 6577 - 7557 905 326 aa, chain - ## HITS:1 COG:L186258 KEGG:ns NR:ns ## COG: L186258 COG0142 # Protein_GI_number: 15672163 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Lactococcus lactis # 1 326 1 326 326 305 46.0 5e-83 MNTFWKSFPDVERSLTETCELIEQTLQTRNEDIEEALVTLARSGGKLLRPAFFFLFAQLG DEEKQEKQQLLKIAASLEILHMATLIHDDIIDDSPLRRGAVTIQSQYGKDVAVYTGDLLF TEFFTLIADAMNGSEFMKINAQGMKRLLLGELDQMSHRFDRRMSIPAYLRSVNGKTAELF SLSCLEGAYFGHSSKEVQRLAKRIGRHIGIAFQVYDDILDYTADTETLKKPALEDLSQGV YTLPLLFAYQAAPHVFSPYLDKGRAITLEEAAEVAALVNDYHGVTEAQAFAKKVTNKAIT DIQQLPDGTAKETLLSLTELLLHRSF >gi|284795423|gb|ADDQ01000126.1| GENE 8 7679 - 8584 637 301 aa, chain + ## HITS:1 COG:L187450 KEGG:ns NR:ns ## COG: L187450 COG1575 # Protein_GI_number: 15672164 # Func_class: H Coenzyme transport and metabolism # Function: 1,4-dihydroxy-2-naphthoate octaprenyltransferase # Organism: Lactococcus lactis # 1 298 1 298 301 286 53.0 2e-77 MNREIFFELVELKAKTASVLPFLLGICFSWYQYGRLHVGYVLIFFIAMFIFNMAVDILDN YNDYHHATEVHDYKEKTNIIGRENLSLPLIRKMIFWMILVSALMGIGLSFIVGWPLLIMG LYCYLIGIFYSSGPKPLSSLPLGEVFSGFTMGFMITLICVYINTFEVFNWSAANLWGIFL VALPNTCYIANLMLANNICDLEEDENNKRYTLVHYLGKASSLKLFVGLNTIAMLAILLAV GLGLTPPTMLLMLLTLPFVRKQTQALLKEQVKSKTFVCAVKILAVGATAQVLFFAIGLWW L >gi|284795423|gb|ADDQ01000126.1| GENE 9 8613 - 9824 1538 403 aa, chain + ## HITS:1 COG:lin2488 KEGG:ns NR:ns ## COG: lin2488 COG1252 # Protein_GI_number: 16801550 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase, FAD-containing subunit # Organism: Listeria innocua # 1 402 1 402 403 345 44.0 6e-95 MNKKHVVILGAGYAGLKTLRELQKGAKDVEITLVDRNNYHYEATDLHEVAAGTQPAEKIT YNIMDVVDEKMTTFIQGTVKTIDAATQTVALEDGQTINYDYLVVSLGFESESFGIPGVQE HALQMVDVKTALNVYEHIQEQMRQYKATQNEEFLKIVVCGAGFTGIELLGSLVENKPKFA EIAGVSADQIQIYCVEAVTRLLPMFNEKLANYGVQLLKDSAIHLLLGKPIKEIKPGAVVY QDNEAGDLAELSAKTIIWTTGVSGSHVVGDSGFEARRGRVMVQPDLTDANHSNVYIIGDC SAVMDTETNRPYPTTAQIALKMGAHAAKNIQAQLKGEATKPFSFKSQGSVCSVGNTRALG IVGKTDIKGYPASFMKKIIMNKALFETGGTKEMMAKGRFDLYH Prediction of potential genes in microbial genomes Time: Sun May 15 13:26:51 2011 Seq name: gi|284795422|gb|ADDQ01000127.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont513.1, whole genome shotgun sequence Length of sequence - 1600 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 19 - 78 5.4 1 1 Tu 1 . + CDS 180 - 1571 1181 ## COG0584 Glycerophosphoryl diester phosphodiesterase Predicted protein(s) >gi|284795422|gb|ADDQ01000127.1| GENE 1 180 - 1571 1181 463 aa, chain + ## HITS:1 COG:L58914_2 KEGG:ns NR:ns ## COG: L58914_2 COG0584 # Protein_GI_number: 15673979 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Lactococcus lactis # 216 456 1 240 249 236 47.0 6e-62 MILPLSGLTFRSYLLTRVKIPAFILDFIFANRVIIIGFVLLELIILYLAIRLAFALPELI LRDVGFRESLKRSWQITKRRFFQILGQFIIIGGTVLGIFTAGYFLIFLGQTAVETFKPEW SLPSAVIAMTLLQVMMLLNLVLSSVAIFYIIVDDMEDEGILPDTPEWFTPKSEVRVEWTT FRVVLFCLIAIIFGIGVGTYNTNYLSHTPDRKPVTISHRGVNGNNGVQNTLDSLIETNKA KPDYVEMDIQETKDHQFIVMHDFNLRALTGVNKRPNQLTLKELTNMNVTENGQTAKMVSF DDYLAKANQLKQRLLIEIKTTPQDSPDLVQRFVKQYRENIFENGHILHTLTYDTAMALKK EEPRFYVGYVIPFNIVGPPKMPVDFFTMEYSTMNRNFVNAAHHDGKKVYAWTANDEDVMT RMIFYGVDGIITDQLSLLNETMKTDLENPTYSDKLLNFAIGMG Prediction of potential genes in microbial genomes Time: Sun May 15 13:26:59 2011 Seq name: gi|284795421|gb|ADDQ01000128.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont667.1, whole genome shotgun sequence Length of sequence - 25351 bp Number of predicted genes - 25, with homology - 23 Number of transcription units - 12, operones - 9 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 1092 1093 ## COG1705 Muramidase (flagellum-specific) - Prom 1155 - 1214 8.4 + Prom 1105 - 1164 6.7 2 2 Op 1 . + CDS 1251 - 1319 87 ## + Prom 1323 - 1382 4.6 3 2 Op 2 . + CDS 1408 - 2067 664 ## EF0798 hypothetical protein 4 2 Op 3 . + CDS 2067 - 3092 893 ## EF0797 hypothetical protein + Term 3115 - 3165 16.1 + Prom 3175 - 3234 8.2 5 3 Op 1 1/0.000 + CDS 3264 - 3914 563 ## COG0671 Membrane-associated phospholipid phosphatase 6 3 Op 2 6/0.000 + CDS 3930 - 4898 916 ## COG1242 Predicted Fe-S oxidoreductase 7 3 Op 3 . + CDS 4898 - 5461 628 ## COG0500 SAM-dependent methyltransferases + Term 5462 - 5516 17.0 - Term 5450 - 5504 13.2 8 4 Op 1 36/0.000 - CDS 5519 - 6187 256 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 9 4 Op 2 1/0.000 - CDS 6192 - 7271 1298 ## COG0577 ABC-type antimicrobial peptide transport system, permease component - Prom 7298 - 7357 7.6 - Term 7296 - 7359 19.0 10 4 Op 3 . - CDS 7410 - 8015 609 ## COG1309 Transcriptional regulator - Prom 8035 - 8094 8.6 - Term 8368 - 8420 8.4 11 5 Op 1 35/0.000 - CDS 8424 - 10193 169 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 12 5 Op 2 . - CDS 10193 - 11908 196 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 - Prom 11955 - 12014 3.4 + Prom 11972 - 12031 8.8 13 6 Tu 1 . + CDS 12162 - 12824 630 ## EF0787 TetR family transcriptional regulator + Term 12830 - 12886 10.7 - Term 12819 - 12869 19.1 14 7 Op 1 . - CDS 12905 - 13696 901 ## COG0627 Predicted esterase 15 7 Op 2 4/0.000 - CDS 13735 - 15201 1678 ## COG0477 Permeases of the major facilitator superfamily - Prom 15271 - 15330 12.9 - Term 15314 - 15358 14.1 16 8 Tu 1 . - CDS 15373 - 16557 1779 ## COG0192 S-adenosylmethionine synthetase - Prom 16645 - 16704 8.2 - Term 16721 - 16769 9.1 17 9 Op 1 . - CDS 16773 - 18650 1795 ## COG1835 Predicted acyltransferases - Prom 18707 - 18766 4.2 - Term 18797 - 18849 15.1 18 9 Op 2 . - CDS 18851 - 20182 1689 ## COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog - Prom 20258 - 20317 75.4 + TRNA 20241 - 20312 57.5 # Arg CCG 0 0 - Term 20659 - 20707 9.0 19 10 Op 1 . - CDS 20742 - 20852 182 ## - Prom 20881 - 20940 2.0 - Term 20920 - 20960 7.5 20 10 Op 2 . - CDS 20969 - 21169 389 ## COG1278 Cold shock proteins - Prom 21285 - 21344 6.7 21 11 Op 1 . - CDS 21403 - 21810 493 ## EF0780 MutT/NUDIX family protein 22 11 Op 2 . - CDS 21836 - 23623 1436 ## COG0584 Glycerophosphoryl diester phosphodiesterase 23 11 Op 3 . - CDS 23694 - 24161 355 ## EF0778 hypothetical protein - Prom 24204 - 24263 9.5 - Term 24267 - 24316 9.9 24 12 Op 1 . - CDS 24329 - 24712 329 ## EF0776 hypothetical protein 25 12 Op 2 . - CDS 24737 - 25351 565 ## EF0775 anchor protein, putative Predicted protein(s) >gi|284795421|gb|ADDQ01000128.1| GENE 1 3 - 1092 1093 363 aa, chain - ## HITS:1 COG:L68758_1 KEGG:ns NR:ns ## COG: L68758_1 COG1705 # Protein_GI_number: 15672254 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Lactococcus lactis # 175 344 57 225 242 165 57.0 1e-40 MKKESMSRIERRKAQQRKKTPVQWKKSTTLFSSALIVSSVGTPVALLPVTAEATEEQPTN AEVAQAPTTETGLVETPTTETTPGTTEQPTTDSSTTTESTTESSTETPTTPSTEQPTVDS TTPVESGTTDSSVAEIAPVAPSTTESEAAPAVTPDDEVKVPEARVASAQTFSALSPTQSP SEFIAELARCAQPIAQANDLYASVMMAQAIVESGWGASTLSKAPNYNLFGIKGSYNGQSV YMDTWEYLNGKWLVKKEPFRKYPSYMESFQDNAHVLKTTSFQAGVYYYAGAWKSNTSSYR DATAWLTGRYATDPSYNAKLNNVITAYNLTQYDTPSSGGNTGGGTVNPGTGGSNNQSGTN TYY >gi|284795421|gb|ADDQ01000128.1| GENE 2 1251 - 1319 87 22 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDLLSCYYSEKTATLVVDASLP >gi|284795421|gb|ADDQ01000128.1| GENE 3 1408 - 2067 664 219 aa, chain + ## HITS:1 COG:no KEGG:EF0798 NR:ns ## KEGG: EF0798 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 219 1 219 219 432 99.0 1e-120 MNKEHFIIELKIYLKALNPKDQAIILAKYKALFDARVAEGETEEQVAKSLGKPRVIAEEI LKEQGIELTERKIENNGWQEIPAATPAYDHPYEKESEFYYDNDSPYYQRPQHRPLTRFFQ VLGIFCLNFFFMFWVILGIALMYVGCGIAGAATLFSPIYGIYSVITQANAASFFQLSMSL FLFGASIIGWLLFLPILKFSAHVFKRYFQWNIAVLRGDI >gi|284795421|gb|ADDQ01000128.1| GENE 4 2067 - 3092 893 341 aa, chain + ## HITS:1 COG:no KEGG:EF0797 NR:ns ## KEGG: EF0797 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 341 1 341 341 578 98.0 1e-164 MKKTTGILLSIAVLAMLIGGSGAVYFYKQAEKSVTPLKESYTLKNKQAGEELHLSLKGKG PYTIYKTDSNNMGLRSPNNAFYSKAEGTLDVKEEKNKITATINTTRTQNQPELSFFNIGI FNDLTPNVSVQIPNNVKKLVIDGSTHSQVSLNAFNVDELTTNLPNSYVSLSGVKAKKMTL NSSDGIYLSADTSAKTATVETTDGDITLDSAYFDEIKNTTTSGDIRVQNARGNIQATTTD GDISVYDFKGEANFSSENGDFSLDMPAVPKKLTVALVHGDIYVNSGEILRNISIKGESKL GDVQLLNKERTSYKNGRADTEFNLSSEFGDITVDTPDDDNQ >gi|284795421|gb|ADDQ01000128.1| GENE 5 3264 - 3914 563 216 aa, chain + ## HITS:1 COG:SP0489 KEGG:ns NR:ns ## COG: SP0489 COG0671 # Protein_GI_number: 15900403 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 216 1 216 216 132 38.0 6e-31 MKNKLYYQFAGSCFLLVFMFLGYVVRFYPTWLKGFDQTITSFVRRPFPQLNNFFIWYTKF ANSLTIIILAIVVIALFIVWKYYAEALWLFINTALIAGVGNSLLKLFFMRQRPTLEHLVT EHTYSFPSGHAVGSTLFYGTILLILPIFIKNKTVRLCVQILLGIGIFMIGVSRIYLGVHF PSDILGGFCLGLAWLLLSYPIYLEKRFVWRFQSKQR >gi|284795421|gb|ADDQ01000128.1| GENE 6 3930 - 4898 916 322 aa, chain + ## HITS:1 COG:L142355 KEGG:ns NR:ns ## COG: L142355 COG1242 # Protein_GI_number: 15674248 # Func_class: R General function prediction only # Function: Predicted Fe-S oxidoreductase # Organism: Lactococcus lactis # 12 310 3 301 313 487 74.0 1e-137 MQIFPYSDDPNKRYHTWNYALRQQFGEKIFKVPIDGGFDCPNRDGTVAKGGCTFCSVSGS GDMIVAPSDPLPLQFQKEIQLMHQKWPTVDQYIVYFQNFTNTHAPVDVIRHRFEQVVNEK GVVGLSIGTRPDCLPDEVVNYLAELNERFYLWVELGLQTTFEETSAAINRAHDYQTYLDG VAKLRKHGIRVCTHLINGLPGETPAMMRENVRRTIQDSDIQGIKLHLLHLMTNTKMMRDY NEGRLQLMSKETYVSVICDQLEMIPPEIVIHRLTGDAPFETIIGPMWSLKKWEVLNAIDA EMKRRNSYQGKYTVISGKEVFN >gi|284795421|gb|ADDQ01000128.1| GENE 7 4898 - 5461 628 187 aa, chain + ## HITS:1 COG:BH3285 KEGG:ns NR:ns ## COG: BH3285 COG0500 # Protein_GI_number: 15615847 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Bacillus halodurans # 6 187 7 190 190 158 45.0 6e-39 MLQTALHFSHQLLKEVVEPGDFVIDATMGNGHDTAFLAELVGPSGEVFAFDIQKEALINT EQKLTELNLLPQTTLFPLGHEHLHAVLDEETEITAAIFNLGYLPKSNKEIITKPTTTKQA LDGLLPHLVKGSRIILVVYYGHEGGSEELDLVTNYTQALPQDVYSVLRYEFINQKNQPPV LFCIEKK >gi|284795421|gb|ADDQ01000128.1| GENE 8 5519 - 6187 256 222 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 201 1 199 223 103 34 1e-21 MANVLEMKNIYKKYGEKHTEVIALKELSFAVQPGEFVAVIGPSGSGKSTFLTIAAGLQAP TSGEVIVGGQSLNKLTKKQRLAQRFQKIGFILQSSNLVPFLTVEDQFHLIEKVDKSRKNS ELKEQLLETLGLKELRNSYPRDLSGGERQRVAIACALYHEPDVILADEPTASLDTEKAFD VVQLLAKEAKEKDKGIIMVTHDERLLKYCDRVVRIRDGELTE >gi|284795421|gb|ADDQ01000128.1| GENE 9 6192 - 7271 1298 359 aa, chain - ## HITS:1 COG:L130944 KEGG:ns NR:ns ## COG: L130944 COG0577 # Protein_GI_number: 15674237 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 1 358 2 357 357 285 47.0 1e-76 MFLGFNEMKYSKGRYVLVVLVMVLIAWLIFILSGLANGLAQGNRLAVDQWQANQVVLSKE ANSNLNVSVLDENVKETISGGKIAPIGQQSLAIRPADDKKAELTNVSLFGIEKESFLMPK VIEGNAFTDKNQVIASETLKNQGFKIGDKLTAGKYDEQLEIVGFISKSSYNIVPVIYTSL DTWRSIKYGNNPAMAKMVNGFIVRSKDNAEVKTTNKDSQVLSISDFIEKLPGYSAQNLTL DGMIYFLIVIAAFIIGIFIFVMTLQKTAMFGVLKVQGVPTSFLAKAVMLQTALLAVLGVA IGLALTGITVLFLPEAMPYATNGPRMILFSVLLILSALIGGAFSIRTIAKIDPLIAIGG >gi|284795421|gb|ADDQ01000128.1| GENE 10 7410 - 8015 609 201 aa, chain - ## HITS:1 COG:lin2558 KEGG:ns NR:ns ## COG: lin2558 COG1309 # Protein_GI_number: 16801620 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 1 198 1 199 202 147 39.0 2e-35 MEKPNKRKADLERTRQIILSVASELFMTKGFKNTSTREIALKANITQPNLYHHFKNKKEL YLAVIEELTSRVQEELVPIVSGNASVEEKLYQLIKVLLDEHPTNLFLMLNDMFQEMGPDY NRTLYQIFKKTYINNIAAIFESEPETNCLQEGISVDDATRFILYNVSALLSIEKTYQRKT VDDDVKKFIQFMLHGVLKSHK >gi|284795421|gb|ADDQ01000128.1| GENE 11 8424 - 10193 169 589 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 366 589 21 235 305 69 25 2e-11 MTDLIKASKFFYHYLKRYKVSFLFIFLAIFAATYLQVKAPQFVGEAIQELAKYAVNVMQG KDDKSAFVSVIWKLLIFYVLTSAASFIYSILFTQVVGKSTNRMRIGLFNKLEKLTIRFFD SHQDGEILSRFTSDLDNIQNSLNQALLQVLTNIALLVGVLIMMFRQNVELAWATIASTPI AILIAVFVISKARKYVDLQQDEVGKLNGYMDEKISGQRVIITNGLQEETIDGFLEQNEKV RAATYKGQVYSGLLFPMMQGMSLVNTAIVIFFGGWLAINGSVDRAAALGLVVMFVQYSQQ YYQPLMQISSGYSMIQLAVTGARRLNEMFDEPDEIRPENGEKLEEINKAVALNHVVFGYN PETPVLKDVSIHVDKGEMVALVGPTGSGKTTIMNLMNRFYDVNEGAVTFDGVDIREMDLD SLRSHVGIVLQESVLFSGTIRENIAFGKPEATDEEIVQAAKQANIHEFIVNLEQGYDTEI TEENNLFSTGQKQLVSIARTIITNPELLILDEATSNVDTVTEAKIQKAMDEAIKGRTSFV IAHRLKTILNADRIIVLRDGEVIEEGNHHELVEQDGFYAELYKNQFVFE >gi|284795421|gb|ADDQ01000128.1| GENE 12 10193 - 11908 196 571 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 346 551 21 223 305 80 27 1e-14 MDLIIQHAKKYKGSVVIALLAVIVMVVSALWQPKLLQQVLEAIMNDDSDKMKNLGIQLIA IAGLGLVAGVINTIFSAKVAQGVSADIREATFRKIQTFSFGNIEKFSAGNLVVRLTNDVT QIQNVIMIALQTLFRIPFLFIGSFILAMLTLPQLWWVIVALVIAVILISMLSFSQMGKHF MIIQNLIDKINGIAKENLLGIRVVKSFVQEKNQLSRFTKVSEELTTHNLIVGSLFAVMIP AFMLVANLAVVGSIFFVSNLVKDDPTLIGGVASFMNYLMQIMMAIIIGGMMMMMTSRAAV SIKRIKEVMETEPDVTYKKVPEQELIGSVEFDHVSFRYPGDEEDTLKDITFSIQPGEMIG IVGATGAGKSTLAQLIPRLFDPTEGKIEVGGVDLREVNEHSLRKTVSFVLQKAILFSGTI AQNLRHGKRDASEADMERASGIAQAKEFIEKLAEGYDAPVEERSNNFSGGQKQRLSITRG VIGEPKILILDDSTSALDARSERLVREALDKELKETTTIVIAQKISSVVHADRILVLDNG RLVGEGTHEELAATNPVYQEIYETQKGKEEA >gi|284795421|gb|ADDQ01000128.1| GENE 13 12162 - 12824 630 220 aa, chain + ## HITS:1 COG:no KEGG:EF0787 NR:ns ## KEGG: EF0787 # Name: not_defined # Def: TetR family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 220 1 220 220 403 99.0 1e-111 MEPKLSKDTIIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAIYWYFKNKQALLQSMAEA IEEHFQEPALCGEWYSDLLAFMENYYDLYQQFPCAVAIEIQTVPAYPQRLRHLNQMMGIL REAGFSPEMTHLAVTSLQHLLFGMIMDATEEKQLVSQVLNGDDYLKEQVLHMKQYVSDNE LTYMEESIQFRRSIHQKSAFIQAVKTYLDGLQADNTSSSK >gi|284795421|gb|ADDQ01000128.1| GENE 14 12905 - 13696 901 263 aa, chain - ## HITS:1 COG:L12887 KEGG:ns NR:ns ## COG: L12887 COG0627 # Protein_GI_number: 15673753 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Lactococcus lactis # 1 261 1 249 258 206 43.0 3e-53 MAFLQANIYSNVLEMEVNVNVILPQETVKKVGTSTQAALTDIPVLYLLHGMGGNHSVWAR RTSIERYVADLGIAVIMPSTDLAWYTDTQYDMNYWTFISEELPKICHQLFPQLSTKREKT FAAGLSMGGYGALKLGLAKPESFAAVASLSGAVSLSSTSFGELLKVRKRSYWEGIFGPLD QIEGSIHDPLYLLQQLVESQTEMPQFYLCCGEQDMLLSANQQMAQALEQAQASYTFETGP GEHDWVFWDEWIQKALAWLPIPK >gi|284795421|gb|ADDQ01000128.1| GENE 15 13735 - 15201 1678 488 aa, chain - ## HITS:1 COG:lin0980 KEGG:ns NR:ns ## COG: lin0980 COG0477 # Protein_GI_number: 16800049 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 3 478 2 479 491 390 50.0 1e-108 MAKETNVKLVTVSVFVATFMTAIEGTIVSTAMPTIVGSLHGMEIMNWVFSIYLLTNAMLT PIYGKLADKIGRKPVFMIGIIIFILGSSLCGFAQDMLTLIIARAIQGVGAGAILPVALTI IADMYSLDKRAKILGLNSAAWGIASIFGPLAGGFIVDTVGWHWIFFINVPIGLVLLGLIS IFLVEPKRERTKMPMDILGSVTLMAVLLTLLLGFQMISDNGFTLVTFGCLSLSVLFFVAF VMIEKRAQDPVIDLHLFNQPTFVLVNLIAALISGFLMGIDVYIPMWMQGVLGKSAGIGGL VLAPMSLLWMAGSFIASSFMEKYAMKKVLTIGLSILLVGAIFLVVMPMAVPFWLFFVVSS VLGVGFGITITTTTVTAQSTVEPEKMGVATSFNTLVRTIGQTVMVSIFGVILNAGMFAKL EASALNVDADVMNQLVNPHTANLIPAALLKPLRGILYAGLHNVYLVGAGLVIVALLLNIF AKAQRAKV >gi|284795421|gb|ADDQ01000128.1| GENE 16 15373 - 16557 1779 394 aa, chain - ## HITS:1 COG:BS_metK KEGG:ns NR:ns ## COG: BS_metK COG0192 # Protein_GI_number: 16080107 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylmethionine synthetase # Organism: Bacillus subtilis # 4 389 5 394 400 596 77.0 1e-170 MTERHLFTSESVSEGHPDKVADQVSDAILDAILEKDPMARVACETSVTTGLVLVFGEIST TAYVDIQKIVRQTVKDIGYTRAKYGFDGETVAVLVAIDEQSPDIAQGVDAALEVRDQDEK DDIGAGDQGLMFGFAVDETPELMPLPIALSHRLVRRLAELRKEKVLPYLRPDAKSQVTVE YDEQGQPQRVDTIVISTQHDDETTLEQIEKDIKEQVINEVIPHELLDDETKYFINPTGRF VIGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDATKVDRSASYAARYIAKNIVAAGL AKKVEVQLAYAIGVAQPVSISINTFGTSALPESKLIEAVRKNFDLRPAGIIEMLDLRRPI YKQTAAYGHFGRTDIDLPWEQTDKVEALKASLAE >gi|284795421|gb|ADDQ01000128.1| GENE 17 16773 - 18650 1795 625 aa, chain - ## HITS:1 COG:L158566 KEGG:ns NR:ns ## COG: L158566 COG1835 # Protein_GI_number: 15674089 # Func_class: I Lipid transport and metabolism # Function: Predicted acyltransferases # Organism: Lactococcus lactis # 10 623 2 600 605 460 41.0 1e-129 MNQTANSKKKRYITGFDGIRTIAVIGVILYHLFPQVMRGGYLGVPIFFVVSGYLINDLLR QEWAENQTIDLKGFYVRRMKRLYPALIVMLLSAVSYITLFQQDLLNNIRSVVASSVFYYN NWWQIFKGFSYFDGFATQSPFVHIWSLAVEAQNYLIWPLLFILLERFVRKRGRIFSLVLI GALISVTLMAVLYVPGADPTRVYYGTDTRVFSILLGSALAYVWPSTRLKEEIPEASKKIL NGAGLSALVLLVLAFLTLSDHTNFVYYGGMFLISLAATVLVAVTAHPGADMNRWLTNPVF TWIGKRSYGIYLYQFPIMIFYEAKIKTLSDHVFLHSLVEIALILVVSELSYRFIEHPLTR LSYKDVWTQFTEFLRKPWDLREKGTMAFMTVISVIAVFGLIVAPANAKSAQQEQLEKNIA KNQQKIEERKKEVQESGTKNSSTSTESSTKPSESQDVLPTQLTPEQVKKAQNLEITTIGD SVILDGASGLQDIFPKMIIDGEVGRQLYSSISLIGELDKKKMLKDTVLVSLGTNGPFTEA QFDEFMKALGNRKVYWINVRVPTRRWQNQVNSLLSQMDKKYDNLTVIDWFNYSNDHDDWF YDDRVHPNVAGGEQYTHFIAEKILQ >gi|284795421|gb|ADDQ01000128.1| GENE 18 18851 - 20182 1689 443 aa, chain - ## HITS:1 COG:lin2555 KEGG:ns NR:ns ## COG: lin2555 COG1508 # Protein_GI_number: 16801617 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog # Organism: Listeria innocua # 16 442 18 447 447 330 42.0 3e-90 MKFEQRMSQQQKQVQKLAMTQQLQQSIQILQFNTEELAAFVEAKALENPLIDLQVDTQYT TDFPITSRSYTNQDEENNYMNQIPDYHLSLFESLIDQIHLNYRDTYLRTLVLFLVEYIDV NGYLTISLEEAAEKTEASAIQMLDALTLLQQLDPAGVGARNLQECLMLQTERDDTAPNLA YILLEEEFDALVSRKWGPLAKKFGIELAEIQLIFDYIQTLSPAPGNIFDATEELYIRPDL TVRIKEDRIVVISNKAGRPTLNFQENYFKRMQETDDKEVQEYIKDKKNEFEWLERAVNQR GDTILRVGQEIVRRQEAFFLEADRPLKPMTLKEIADALSIHESTVSRAVNGKYLETTFGV FELRSFFSTSILSSEEDGEDVSTTMVKKQLQKLIDQEVKSKPLSDQKLVERLKDSGMEIS RRTVAKYREALGIPSSSKRKRYE >gi|284795421|gb|ADDQ01000128.1| GENE 19 20742 - 20852 182 36 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTLTELLLVSGLFWLVIIIGVIAGSIFLIKYFRGRS >gi|284795421|gb|ADDQ01000128.1| GENE 20 20969 - 21169 389 66 aa, chain - ## HITS:1 COG:L117090 KEGG:ns NR:ns ## COG: L117090 COG1278 # Protein_GI_number: 15672511 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Lactococcus lactis # 1 66 1 66 66 97 81.0 4e-21 MNNGTVKWFNADKGFGFITGEDGNDVFAHFSAIQSDGFKTLDEGQAVTFDTEEGPRGLQA TNIVKA >gi|284795421|gb|ADDQ01000128.1| GENE 21 21403 - 21810 493 135 aa, chain - ## HITS:1 COG:no KEGG:EF0780 NR:ns ## KEGG: EF0780 # Name: not_defined # Def: MutT/NUDIX family protein # Organism: E.faecalis # Pathway: not_defined # 1 135 1 135 135 263 100.0 2e-69 MKKEFSRVLLKNQSDEILILKDRPDTWNFPGGKQELGESALECAIREMKEELAVEITELE EIFTGPLVFDSIVWQGHFYFAKQAQGKVTLNEPNKIKGVQFIKRFEEVNFSPGLAPLFDY LARSDYLKLNKTNWK >gi|284795421|gb|ADDQ01000128.1| GENE 22 21836 - 23623 1436 595 aa, chain - ## HITS:1 COG:L58914_2 KEGG:ns NR:ns ## COG: L58914_2 COG0584 # Protein_GI_number: 15673979 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Lactococcus lactis # 344 583 1 240 249 266 55.0 7e-71 MSAWQTFKNGTRQFFKDILQYLWLFFTLNVLLLLVGGAFSWATSNALKTQDIPYLSFNNL NLLLEKPLALVLLILLLLLFLGAVFYQFTFLLLGIFQIRQDHRFHFKGVTKASFKVLKKQ GARSWLFFFGYFVVIVPFGNLIFQSNLLTKFVIPDFIVEFLSQRIPYLVGLLAFGLLVWD LAIRFIYTLPLMILERKKAGEAVKASWSMTNKRLWFIIRNIAFVTIAVFVSTYVIYVLLY LLQLKLDTLSDTISLLGGILNLTVVQFLQFVSNAWLSVLLINFLYTQLNVQVETTTKVAF DKETKRNKLVTIGMGLGLFTIFGGYIIFNAVYLTGLLESKPLIISHRGVTNSNGVQNTIP AMERTIKFKPDYIEIDVQETKDHQFVVMHDANLQELAGVDGTPQEFTLAELTKMTVKENG QEAPIASFDDYLAKANQAKQKLLVEIKTSKQDSQGALSNFIEKYERPLIKNNHQVQSLDY NVIKAFKKAKSKVKVSFILPYNFTFPETQADLYTMEATTLNDTFILKADQQKKAVYVWTV NDSEVLSKMLFMDVAGVITDDLELVNEEVNDFEKNPSYADRILHYIFMLPSVASQ >gi|284795421|gb|ADDQ01000128.1| GENE 23 23694 - 24161 355 155 aa, chain - ## HITS:1 COG:no KEGG:EF0778 NR:ns ## KEGG: EF0778 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 155 1 155 169 146 98.0 3e-34 MIELILLLSVILLGLLIGNKRVDKWLFLKALLLFSVMLSVSILISVAMYLLLTTGVANVI GQRLESLFLLGIVVIISTSLLLYFLLNLTTKKIFLPIALMKIIEYYIQWVLIYVTIYQVI FDQFIVSSEVKNTLQGTIDEPVAIIIVILPSFISI >gi|284795421|gb|ADDQ01000128.1| GENE 24 24329 - 24712 329 127 aa, chain - ## HITS:1 COG:no KEGG:EF0776 NR:ns ## KEGG: EF0776 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 127 1 127 127 200 98.0 1e-50 MNKKISFSLLILLLSLLVGFTFIPHKKELSFNEYQEKKHSGETFYVVLKKKNCSDCQNFE KLLQAPKQVYYVELTNKETMKEWSTFIRENKVLHVPSMFKIDNGHLKKIDGEGDANQLFA NYQKTTK >gi|284795421|gb|ADDQ01000128.1| GENE 25 24737 - 25351 565 204 aa, chain - ## HITS:1 COG:no KEGG:EF0775 NR:ns ## KEGG: EF0775 # Name: not_defined # Def: anchor protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 204 759 962 962 288 96.0 1e-76 VKTAFGNETSTWTQASMVDDINKVLDITDVKVTDENGKDVTANGTVTQENNKVTFEMNKQ ADSYSYLAGHTYTMTITTKIKADATDEELAPYIEQGGIPNQADLNFGNEGDVLHSNKPTV TPPAPTPEDPKKPEPKQPLKPKKTLTPTNHQAPTNPVNFGKSASKGIHLPMTNTTVNPLY MIAGLIVLIVAISFGITKNKKRKN Prediction of potential genes in microbial genomes Time: Sun May 15 13:27:52 2011 Seq name: gi|284795420|gb|ADDQ01000129.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont691.1, whole genome shotgun sequence Length of sequence - 74756 bp Number of predicted genes - 68, with homology - 65 Number of transcription units - 37, operones - 19 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 336 - 374 5.0 1 1 Tu 1 . - CDS 446 - 589 142 ## EF3247 hypothetical protein - Prom 675 - 734 10.3 - Term 802 - 853 7.1 2 2 Tu 1 . - CDS 858 - 2474 1280 ## COG1316 Transcriptional regulator - Prom 2494 - 2553 2.0 + Prom 2902 - 2961 5.2 3 3 Op 1 . + CDS 3040 - 3108 57 ## 4 3 Op 2 . + CDS 3159 - 3797 637 ## COG3397 Uncharacterized protein conserved in bacteria + Term 4000 - 4052 18.1 - Term 3994 - 4034 10.6 5 4 Tu 1 . - CDS 4061 - 5053 956 ## COG0340 Biotin-(acetyl-CoA carboxylase) ligase - Prom 5073 - 5132 5.4 + Prom 5026 - 5085 3.7 6 5 Tu 1 . + CDS 5192 - 5407 283 ## COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain + Term 5415 - 5448 3.1 + Prom 5705 - 5764 9.8 7 6 Op 1 58/0.000 + CDS 5824 - 9438 849 ## PROTEIN SUPPORTED gi|163796927|ref|ZP_02190884.1| 30S ribosomal protein S12 + Term 9475 - 9511 -0.1 8 6 Op 2 . + CDS 9605 - 13258 4074 ## COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit + Term 13269 - 13307 4.2 - Term 13249 - 13302 13.9 9 7 Tu 1 . - CDS 13307 - 13999 318 ## COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases - Prom 14069 - 14128 7.3 + Prom 14028 - 14087 6.6 10 8 Op 1 . + CDS 14108 - 15628 1578 ## COG1070 Sugar (pentulose and hexulose) kinases 11 8 Op 2 . + CDS 15712 - 16431 562 ## EF3234 putative lipoprotein + Prom 16449 - 16508 5.4 12 9 Tu 1 . + CDS 16560 - 17027 536 ## COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) + Term 17046 - 17081 4.0 + Prom 17056 - 17115 4.3 13 10 Op 1 59/0.000 + CDS 17147 - 17692 930 ## PROTEIN SUPPORTED gi|227517177|ref|ZP_03947226.1| ribosomal protein L13 14 10 Op 2 . + CDS 17706 - 18098 653 ## PROTEIN SUPPORTED gi|29377675|ref|NP_816829.1| 30S ribosomal protein S9 + Term 18153 - 18192 8.1 + Prom 18181 - 18240 3.7 15 11 Tu 1 . + CDS 18273 - 18842 480 ## gi|256960555|ref|ZP_05564726.1| predicted protein + Term 18857 - 18898 6.7 16 12 Tu 1 . - CDS 18918 - 19907 516 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 19977 - 20036 8.2 + Prom 19928 - 19987 13.4 17 13 Op 1 8/0.000 + CDS 20047 - 21450 1365 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 18 13 Op 2 . + CDS 21452 - 22918 1542 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase + Term 22975 - 23027 11.0 - Term 22961 - 23015 12.2 19 14 Op 1 . - CDS 23031 - 25550 1807 ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain 20 14 Op 2 13/0.000 - CDS 25698 - 26525 827 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 21 14 Op 3 13/0.000 - CDS 26522 - 27337 1022 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 22 14 Op 4 9/0.000 - CDS 27354 - 27845 728 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 23 14 Op 5 . - CDS 27858 - 28277 599 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA - Prom 28345 - 28404 5.7 + Prom 28402 - 28461 6.4 24 15 Op 1 45/0.000 + CDS 28535 - 29470 963 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 25 15 Op 2 . + CDS 29463 - 30233 803 ## COG0842 ABC-type multidrug transport system, permease component + Prom 30292 - 30351 7.6 26 16 Tu 1 . + CDS 30422 - 31396 1166 ## COG0042 tRNA-dihydrouridine synthase + Term 31406 - 31456 14.1 - Term 31394 - 31443 10.1 27 17 Op 1 . - CDS 31454 - 32989 1239 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin 28 17 Op 2 . - CDS 33010 - 33132 166 ## 29 17 Op 3 . - CDS 33166 - 34140 899 ## COG0523 Putative GTPases (G3E family) 30 17 Op 4 . - CDS 34156 - 34305 247 ## PROTEIN SUPPORTED gi|29377651|ref|NP_816805.1| 50S ribosomal protein L33 - Prom 34338 - 34397 2.5 - Term 34343 - 34372 0.4 31 18 Tu 1 . - CDS 34416 - 34685 457 ## PROTEIN SUPPORTED gi|29377650|ref|NP_816804.1| 30S ribosomal protein S14 - Prom 34860 - 34919 5.3 + Prom 34666 - 34725 5.9 32 19 Tu 1 . + CDS 34892 - 35284 372 ## COG1765 Predicted redox protein, regulator of disulfide bond formation + Term 35420 - 35487 6.2 + Prom 35437 - 35496 7.5 33 20 Op 1 32/0.000 + CDS 35646 - 36368 366 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 34 20 Op 2 22/0.000 + CDS 36365 - 37036 725 ## COG2011 ABC-type metal ion transport system, permease component 35 20 Op 3 . + CDS 37049 - 37867 1104 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen + Term 37874 - 37924 9.4 + Prom 37879 - 37938 7.3 36 21 Op 1 9/0.000 + CDS 37958 - 39727 1888 ## COG3275 Putative regulator of cell autolysis 37 21 Op 2 2/0.000 + CDS 39708 - 40436 717 ## COG3279 Response regulator of the LytR/AlgR family + Term 40441 - 40489 13.4 + Prom 40498 - 40557 8.0 38 22 Op 1 23/0.000 + CDS 40588 - 41007 524 ## COG1380 Putative effector of murein hydrolase LrgA 39 22 Op 2 . + CDS 41004 - 41687 1007 ## COG1346 Putative effector of murein hydrolase + Term 41692 - 41718 -1.0 - Term 41679 - 41705 -1.0 40 23 Tu 1 . - CDS 41884 - 42429 624 ## COG1335 Amidases related to nicotinamidase - Prom 42458 - 42517 7.8 + Prom 42512 - 42571 5.9 41 24 Tu 1 . + CDS 42595 - 43608 847 ## COG0657 Esterase/lipase + Term 43610 - 43653 12.6 + Prom 43854 - 43913 9.8 42 25 Op 1 . + CDS 43984 - 48831 4748 ## EF3188 hypothetical protein 43 25 Op 2 . + CDS 48851 - 49240 211 ## EF3187 cell wall surface anchor family protein 44 25 Op 3 . + CDS 49197 - 49931 1078 ## EF3186 hypothetical protein 45 25 Op 4 . + CDS 49936 - 50736 848 ## EF3185 hypothetical protein 46 25 Op 5 . + CDS 50737 - 51495 1029 ## EF3184 hypothetical protein + Term 51516 - 51569 9.4 + Prom 51522 - 51581 4.5 47 26 Tu 1 . + CDS 51607 - 52683 1163 ## EF3183 cell wall surface anchor family protein, putative + Term 52712 - 52757 11.8 + Prom 52691 - 52750 2.1 48 27 Op 1 . + CDS 52785 - 53270 463 ## EF3182 hypothetical protein 49 27 Op 2 . + CDS 53254 - 54726 850 ## EF3181 hypothetical protein + Term 54730 - 54783 8.4 + Prom 54821 - 54880 7.8 50 28 Op 1 . + CDS 54963 - 55460 512 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 51 28 Op 2 . + CDS 55485 - 56369 735 ## EF3179 hypothetical protein + Term 56383 - 56423 7.1 + Prom 56413 - 56472 2.7 52 29 Tu 1 . + CDS 56499 - 57635 1459 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases + Term 57641 - 57687 8.1 - Term 57620 - 57683 6.4 53 30 Tu 1 . - CDS 57688 - 58479 721 ## EF3177 hypothetical protein - Prom 58529 - 58588 3.2 + Prom 58546 - 58605 7.4 54 31 Op 1 . + CDS 58643 - 59026 235 ## COG3304 Predicted membrane protein + Prom 59030 - 59089 2.4 55 31 Op 2 2/0.000 + CDS 59115 - 59540 521 ## COG1959 Predicted transcriptional regulator 56 31 Op 3 . + CDS 59608 - 60228 926 ## COG2910 Putative NADH-flavin reductase + Term 60245 - 60306 13.9 - Term 60233 - 60294 13.9 57 32 Tu 1 . - CDS 60308 - 61507 1394 ## EF3173 hypothetical protein - Prom 61596 - 61655 8.3 + Prom 61601 - 61660 6.5 58 33 Op 1 5/0.000 + CDS 61699 - 62943 214 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase + Prom 62947 - 63006 4.8 59 33 Op 2 . + CDS 63057 - 64103 1515 ## COG0468 RecA/RadA recombinase + Term 64132 - 64183 2.6 60 34 Tu 1 . + CDS 64209 - 64304 56 ## + Term 64331 - 64363 3.2 + Prom 64337 - 64396 7.2 61 35 Op 1 2/0.000 + CDS 64500 - 66056 2088 ## COG1418 Predicted HD superfamily hydrolase + Term 66085 - 66139 17.1 + Prom 66127 - 66186 6.6 62 35 Op 2 . + CDS 66216 - 67013 940 ## COG1692 Uncharacterized protein conserved in bacteria + Term 67014 - 67072 5.1 63 36 Op 1 . + CDS 67102 - 67473 574 ## EF3168 hypothetical protein 64 36 Op 2 6/0.000 + CDS 67474 - 70050 2885 ## COG0249 Mismatch repair ATPase (MutS family) 65 36 Op 3 . + CDS 70082 - 72214 1921 ## COG0323 DNA mismatch repair enzyme (predicted ATPase) 66 36 Op 4 . + CDS 72239 - 72793 642 ## COG0424 Nucleotide-binding protein implicated in inhibition of septum formation + Term 72799 - 72850 3.1 + Prom 72833 - 72892 3.5 67 37 Op 1 . + CDS 72926 - 73363 472 ## COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase + Prom 73424 - 73483 4.9 68 37 Op 2 . + CDS 73538 - 74509 1100 ## COG0462 Phosphoribosylpyrophosphate synthetase + Term 74520 - 74561 10.3 Predicted protein(s) >gi|284795420|gb|ADDQ01000129.1| GENE 1 446 - 589 142 47 aa, chain - ## HITS:1 COG:no KEGG:EF3247 NR:ns ## KEGG: EF3247 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 47 19 65 65 81 95.0 7e-15 MHVFPKFRERRGLLSAYETIQTILGFGMFTIALIALIVKLLKNDNKK >gi|284795420|gb|ADDQ01000129.1| GENE 2 858 - 2474 1280 538 aa, chain - ## HITS:1 COG:BH3670 KEGG:ns NR:ns ## COG: BH3670 COG1316 # Protein_GI_number: 15616232 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 237 530 10 304 304 207 41.0 6e-53 MQTSNKKFPLYALTTLGFTFLTLLVAASPNWFQQMDEAIYHIKWQLNAPLLTAVNLLAKT ATIGPMLLFFLLLMVYLLRKKEKILAFWAVSNLLAVGFLGSVFKHVVGRARPNLGALADR SSASFPSGHSLLAMALVCTILIILAYLHIEKTKGIKIFLLTYLVLIVLGRLILRVHYPSD VIAGMLLSYSWINFSFQIVQRYLPAPEPEEAEVPTQRRRRHSRKRKSLFVVFSLTLLFLG TLSVSAYGVSMYRNLQKTANTMYKPRKSSTKSPDLAKGEPVSFLIMGIANDSKRKTDYRS NALMVVTVNNQLQKTTITSIPRDYYVEMAGTNGEYNKINAAHVFGGADMQIKTVENVLHI PINHYFSIDMDAMKDLGDAVGGVTVDNAFAFDAEGIHYPKGKQHLGGWEALQYARMRYED PEGDYGRQRRQREVLIELTNKLLSFNSLLKYQEILDVIGEHGETDLSFDQMMAMLKKYTP ALKTIETDQLKGYDYTGDGVTGIEGISYQLVEESERQRVENAIKEQMNLSTKDTEQSQ >gi|284795420|gb|ADDQ01000129.1| GENE 3 3040 - 3108 57 22 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MHKVDGRYRKSKNDVVEILRFS >gi|284795420|gb|ADDQ01000129.1| GENE 4 3159 - 3797 637 212 aa, chain + ## HITS:1 COG:L11456 KEGG:ns NR:ns ## COG: L11456 COG3397 # Protein_GI_number: 15673933 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 1 211 1 206 220 148 40.0 8e-36 MKKMMLFIIAVGATMIGVFALGDAQQSYAHGYVDSPVSRVKNAEANGFGWGPGQDSSQPE IITTPQGIEAPTKLLDTGQLNGRLPSAGLASYSKLDEQTATRWVKSNITTGENNFKWVMT AKHKTNRFRYYMTKPGWNPNAPLTMDEMELIGIVGQPIGQDLPPGQGFMVNDTETHRIKI PADRKGYHVIYAVWDINDTINSFYQAIDVNVQ >gi|284795420|gb|ADDQ01000129.1| GENE 5 4061 - 5053 956 330 aa, chain - ## HITS:1 COG:SPy1362_2 KEGG:ns NR:ns ## COG: SPy1362_2 COG0340 # Protein_GI_number: 15675294 # Func_class: H Coenzyme transport and metabolism # Function: Biotin-(acetyl-CoA carboxylase) ligase # Organism: Streptococcus pyogenes M1 GAS # 81 321 2 235 240 199 44.0 6e-51 MSTKSQVLTLLMKQTPAFLSGEEMAQRLSLSRTAIWKAINELKKDGYQITSVQNKGYRLE KSDVLSAEGIQLALWSQTPPLTITVLETSESTMTDAKRAILDQTPDNTLIVADMQEMPRG RFGRPFFATPGKGIYMSMVLQPNQNFEEIAQYTVIMAVAVARAMDALAGVHTEIKWVNDL YLNGKKVCGILSEAMSNVETGQISNVIIGMGINFSITETEFPEDIRQKVTSLFPEGEPTA TRNELVANIWNHFYQILDERSTKDFLEEYRQRSFVIGKDVAFTQNGQDFRGVATTINGNG ELIVQLPDGTTKTLSSGEISLDQIGEWHRG >gi|284795420|gb|ADDQ01000129.1| GENE 6 5192 - 5407 283 71 aa, chain + ## HITS:1 COG:L121994 KEGG:ns NR:ns ## COG: L121994 COG3478 # Protein_GI_number: 15672697 # Func_class: R General function prediction only # Function: Predicted nucleic-acid-binding protein containing a Zn-ribbon domain # Organism: Lactococcus lactis # 3 70 5 72 72 99 76.0 1e-21 MEKQQYVCEKCGNMHYVSDQFQATGGNFAKIFDVQNKKFITISCTQCGYTELYRSQTSGG MNVLDFLLGGG >gi|284795420|gb|ADDQ01000129.1| GENE 7 5824 - 9438 849 1204 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163796927|ref|ZP_02190884.1| 30S ribosomal protein S12 [alpha proteobacterium BAL199] # 725 1140 906 1387 1392 331 43 6e-90 MAGHVVKYGKHRERRSFARISEVLELPNLIEIQTDSYQWFLDEGLREMFEDILPIDDFQG NLSLEFVDYELKEPKYTVEEARAHDANYSAPLHVTLRLTNRETGEIKSQEVFFGDFPLMT EMGTFIINGAERVIVSQLVRSPGVYFHGKVDKNGKEGFGSTVIPNRGAWLEMETDAKDIS YVRIDRTRKIPLTVLVRALGFGSDDTIFEIFGDSESLRNTIEKDLHKNASDSRTEEGLKD IYERLRPGEPKTADSSRSLLTARFFDPKRYDLANVGRYKVNKKLDLKTRLLNLTLAETLV DPETGEIIVEKGTVLTHQIMETLGEYIDNGLNSVTYYPSEDAVVTEPMTIQVIQVLSPKD PERIVNVIGNGYPDDSVKTVRPADIVASMSYFFNLMEDIGNVDDIDHLGNRRIRSVGELL QNQFRIGLARMERVVRERMSIQDTETLTPQQLINIRPVVASIKEFFGSSQLSQFMDQTNP LGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYAK VNKFGFIETPYRRVDRTTGRVTDQVDYLTADIEDHYIVAQANSLLNEDGTFANDVVMARL QSENLEVAVDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIQPRSP WVGTGMEYKSAHDSGAALLCKHDGVVEFVDAKEIRVRRDNGALDKYMVTKFRRSNSGTSY NQRPIVHLGEKVEKGDTLADGPSMEEGEMALGQNVLVAFMTWEGYNYEDAIIMSRRLVKD DVYTSVHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVQDGDLLVG KVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTREAGDELSPG VNMLVRVYIVQKRKIHEGDKMAGRHGNKGVVSRIMPEEDMPFLPDGTPVDIMLNPLGVPS RMNIGQVLELHLGMAARQLGIHVATPVFDGATDEDVWETVREAGMASDAKTVLYDGRTGE PFDNRISVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALE AYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQSLGLDMRV LDIEEAEIELRDMDDDDDDLITVDALTKFAEQQSAKQLEKEAESVVKEEAQDVVQEIETA EDRD >gi|284795420|gb|ADDQ01000129.1| GENE 8 9605 - 13258 4074 1217 aa, chain + ## HITS:1 COG:lin0286 KEGG:ns NR:ns ## COG: lin0286 COG0086 # Protein_GI_number: 16799363 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta' subunit/160 kD subunit # Organism: Listeria innocua # 1 1202 1 1201 1201 1932 79.0 0 MIDVNKFESMQIGLASPEKIRSWSYGEVKKPETINYRTLKPEREGLFCERIFGPTKDWEC ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM SPRALEEVIYFASYVVIEPGDTTLEKKQLLTEREYREKREQYGQAFKAAMGAEAVKQLLD NVDLDGEVAQLKEELKTASGQKRTRAIRRLDILEAFRASGNQPSWMVMDVIPVIPPDLRP MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPSIIVQNEKRMLQEAVDALIDNGR RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPFLKMYQCGLPKE MAIELFKPFVMRELVQREIATNIKNAKRKIERGEDEVWDILEEVIQEHPVLLNRAPTLHR LGIQAFEPVLVEGRAIRLHPLVCEAYNADFDGDQMAVHVPLNEEAQAEARMLMLAAQNIL NPKDGKPVVTPSQDMVLGNYYLTMEEEGREGEGMIFRDMNEAVLAWQNGYVHLHSRIGVQ TTLLGDKPFTDWQKERILITTVGKIIFNEIMPVEFPYLNEPTDYNLTVQTPDKYFVEAGT DIPAHIKEQELVLPFKKKNLGNIIAEVFKRFHITETSKMLDRMKDLGYKHSTYAGMTVGI ADIMVLHEKQAIIDAAHKQVETITKQFRRGLITDDERYERVIGVWNGAKDEIQQKLIESM EARNPIFMMSDSGARGNISNFTQLAGMRGLMAAPNGRIMELPIISNFREGLSVLEMFIST HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLEIEAIREGNEIIEPLD ERLLGRYTRKSVVHPETGAIIIGADQLITEDLAREIVDAGIEKVTIRSVFTCNTKHGVCK HCYGRNLATGSDVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF EARNPKGQAVITEVTGEVIDISEDPATRQKEVTIKGKTDTRTYTVPYTARMKVAEGDIIH RGAPLTEGSIDPKQLLQVRDVLSVENYLLREVQRVYRMQGVEIGDKHIEVMVRQMLRKIR VMDPGDTEILPGTLMDIAEFKDRNYDTLVAGGVPATSRPVLLGITKASLETNSFLSAASF QETTRVLTDAAIRGKKDPLLGLKENVIIGKIIPAGTGMARYRNMEPKEVGVASENVYSIS DIEAQMAAEDAMKNINK >gi|284795420|gb|ADDQ01000129.1| GENE 9 13307 - 13999 318 230 aa, chain - ## HITS:1 COG:aq_1601 KEGG:ns NR:ns ## COG: aq_1601 COG1989 # Protein_GI_number: 15606720 # Func_class: N Cell motility; O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, prepilin signal peptidase PulO and related peptidases # Organism: Aquifex aeolicus # 3 223 7 236 254 92 30.0 4e-19 MFFLSLFLIGACFGSFLCLVAERLPVGRSLWWPPSHCQGCHQPLQLYELIPVVSILLQRF RCRKCQQPVAKSYLLAELVMGSLTASCFSAGLTIDAVILWWWLTSAFTLSLIDYWYLVVE PKILYPSFFVLCLLKMAGQHSFYLLTGLFCFCFFRAVLHYFPEAMGRGDLLLLGLWGCFL QVPQLLMLLFFASSYGLIYGYSCKFLVYPVEQTLPFVPFLSLGLLTISWL >gi|284795420|gb|ADDQ01000129.1| GENE 10 14108 - 15628 1578 506 aa, chain + ## HITS:1 COG:BS_gntK KEGG:ns NR:ns ## COG: BS_gntK COG1070 # Protein_GI_number: 16081058 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Bacillus subtilis # 1 506 1 507 513 413 40.0 1e-115 MEKLAIGVDVGTTQAKAVAFQPNGTVVASSYVRYPLIQETEGMAEQDPETLFQAVVNCIR TVTQQVKNQPIGLISFASAMHGLIAMDAQGRPLTQVITWADTRASDYAEALKETPAAQLF YQLTGMPVHPMAPLYKIRWLQENQPAVAQSAAKFIGIKDYIFYRFFGEYWTDYSSASGMG LFNIHTRQWESSILAYLSIEEEQLPKVAPSTFIFPALAPSWQEMLGVEEETVLVLGGADG PLSNLGLGALGMGVATLTVGTSGALRYIVEEPFLHPQGETFCFALDEQHWVIGGASSNGA VALDWASQTIFAEERQQAIQNGTNLYDPIMAKIATVPAGANGLLFHPYLLGERAPLWNAE ASASFIGLRKNHHAGHLARAVVEGICFNLKTILEDLKQLGGPVQEIRATGGFADSPVFRQ IMADVLGETLSFTDSTEASALGAVLLGWQGLGQLPNLQAAAQQVLIHETVTPRADQLLVY QELYPVFQETQQVLAQSYQKLAEFRK >gi|284795420|gb|ADDQ01000129.1| GENE 11 15712 - 16431 562 239 aa, chain + ## HITS:1 COG:no KEGG:EF3234 NR:ns ## KEGG: EF3234 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 239 1 239 239 342 98.0 6e-93 MKKQLLSLFLLFIGALASCSAPSRSGEKAAQQLVDYFIYQEKPETFSQTFREPKVLAEHL QTSRQQFQKQFFNSLKEMNAEVTETEAQKLSAELLAQVKKKASYHLVATKELNGQATITF QIKGLDFVTAIEDTTTALLQQTQQATQALDMQHTLAVLKKEIQQINVSHEPVELPLTVKQ VEGQWYLPAVEQLRLNQFFLAFVTGKEDTDQLTEALDTILTQAEQKVVTADERTAIAGN >gi|284795420|gb|ADDQ01000129.1| GENE 12 16560 - 17027 536 155 aa, chain + ## HITS:1 COG:SPy1531 KEGG:ns NR:ns ## COG: SPy1531 COG0783 # Protein_GI_number: 15675430 # Func_class: P Inorganic ion transport and metabolism # Function: DNA-binding ferritin-like protein (oxidative damage protectant) # Organism: Streptococcus pyogenes M1 GAS # 2 153 24 175 175 174 51.0 8e-44 MKFEKTKEILNQLVADLSQFSVVIHQTHWYMRGPEFLTLHPQMDEYMDQINEQLDVVSER LITLDGSPFSTLREFAENTKIEDEIGNWDRTIPERMEKLVAGYRYLADLYAKGIEVSGEE GDDCTQDIFIANKTDIEKNIWMLQAKLGKAPGIDA >gi|284795420|gb|ADDQ01000129.1| GENE 13 17147 - 17692 930 181 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227517177|ref|ZP_03947226.1| ribosomal protein L13 [Enterococcus faecalis TX0104] # 1 181 1 181 181 362 99 2e-99 MIEGKILNGIVCPTMSPGNSSVCQTSKTKLEERNVRTTYMAKAGEVERKWYVVDATDVPL GRLSAVVASVLRGKNKPTFTPHVDTGDFVIVINADKVKLTGKKATDKIYYRHSMYPGGLK SVTAGELRDKNSRRLIETSVKGMLPKNTLGRKQFTKLNVYGGAEHPHAAQQPEVLDITNL I >gi|284795420|gb|ADDQ01000129.1| GENE 14 17706 - 18098 653 130 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29377675|ref|NP_816829.1| 30S ribosomal protein S9 [Enterococcus faecalis V583] # 1 130 1 130 130 256 99 3e-67 MAQVQYSGTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLREVINQPFGVTETKGA YDVIVNVNGGGYAGQSGAIRHGIARALLQVDPDFRSALKRAGLLTRDARMVERKKPGLKK ARKASQFSKR >gi|284795420|gb|ADDQ01000129.1| GENE 15 18273 - 18842 480 189 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256960555|ref|ZP_05564726.1| ## NR: gi|256960555|ref|ZP_05564726.1| predicted protein [Enterococcus faecalis Merz96] # 1 189 1 189 189 382 100.0 1e-105 MQKMSSVVCQSCGANAFKWYDTADQVVECKYCHSKQAFIKGMGVESAIKVVGGKEEAETD SEYQERIIHQFGLKDQVIEVKNYSLIDIPLTFIVWLYLDILLGALFICGGFLSKNYRAWY ANLLRWHFCGWRYTKSATEKEKASQRIRGSLLIKWLLQEDPDKTKKLIMVGVSILFTVLF VYTTGNGAA >gi|284795420|gb|ADDQ01000129.1| GENE 16 18918 - 19907 516 329 aa, chain - ## HITS:1 COG:lin2983 KEGG:ns NR:ns ## COG: lin2983 COG2207 # Protein_GI_number: 16802041 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Listeria innocua # 51 323 48 323 326 124 34.0 2e-28 MLNQLPSDLFLLTHSEHHYLEDPNYHSPIYEQLDKILLHDQEVYQFQLPNLKQNLIEIRR DSRFTDVPLHVHTNLNLNYVYSGSCHYQVNGTEVLLKEGDLCIVDRHVLRSKGRLSEKDI VFNISLSNDFFSRAFIMGLGETSILSTFLFSAITENNHHDGYMIFQNNHKNTIAFLNQLI CEYFQNDTFSKHAIEALFSLIFIQLIRDYQKNSTKKVAPISNKTSHMLEIIDYIEKNART CTLKETALLFNYHPKYLSQLIKQTFNKTFKEIQTEQRMKNAIQLLRYSELSIAEISQNVG ISNVSQFYKNFSALYTLSPNEYRKTLTKH >gi|284795420|gb|ADDQ01000129.1| GENE 17 20047 - 21450 1365 467 aa, chain + ## HITS:1 COG:SPy0572_2 KEGG:ns NR:ns ## COG: SPy0572_2 COG1263 # Protein_GI_number: 15674662 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Streptococcus pyogenes M1 GAS # 97 450 6 358 364 253 40.0 7e-67 MDVQKLCQSILSNIGGAKNVKSVTHCATRLRLTLNDEEKIQQESINDLDGVMGSIVTGGQ YQIIIGQSVGTVYAHFTQLLSTESESDLSHQEMAEPSKPSKKGIIPQVLDTITGIFTPLL PAITAAAMIKTVLVLLDLFHLIDPAGGTYQILTFAGDTAFYFMPVLVAYSASIKFRLNPY LGTIIGMLLLHPTFVSLVSEGKPLKMFGFLPITLANYSSTVIPIILIIWVASYVDRYVER FCPESVKFFLRPLVTFFIMIPLALGIIGPLGSWVGQGLGIVLNLVQNYAVWVLPFIFGAL SPVFIMTGMHYAVTIPLVLQSISSNGFDMLGIGFLVSNFAQAGAAIAVGRFAKSQKVRGL AFSSGFTALLGITEPALYGVNLKYKKPFLAVIIAGAMSGLLAGFLNVKRMTFAPTGITTL PIFIDPTNQWNFIFAIVCAVASFILAFIITSGLVYKDQYLRNELEEK >gi|284795420|gb|ADDQ01000129.1| GENE 18 21452 - 22918 1542 488 aa, chain + ## HITS:1 COG:lin0288 KEGG:ns NR:ns ## COG: lin0288 COG2723 # Protein_GI_number: 16799365 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Listeria innocua # 5 487 8 486 486 529 53.0 1e-150 MTYTFSKDFLWGGAISSGQADGGYLEDGKGVDTQSMRYFDPNWNREERNRNRDINMTSER FEQALVAEGDRNYPFRRGIDFYHRYKEDLALFEEMGMNIFRTSIDWSRIYPNGDDESPNE AGIQFYVDLFTECQKRGMKVFATMLHYGIPVNLVTKYGGWKSRKTIDFFEVYARTLFERL GDLVDYWLPFNEINCNRFNPYNGCAVIEDQEENYNQSIFQAGHNQFVANARAIKAAKEIL GEPMIGGMIARFTTYPATCKPEDVMQSILDENYKNYFYTDVLARGKYPSYTKRMFDELGI TIEVAPGDLELLAENKVNFLSFSYYMSMITSVSPDYEITSGNLLSGMKNPYLETSDWGWQ IDPIGLRISLNEMYDRYQLPLFIAENGLGAYDQVEEDGAIHDPYRIDYLEKHLQQMSEAI ADGVELLGYTMWGIIDIISCGTIEMSKRYGVIYVDSDDAGNGTLARSKKDSFYWYKEVIS TNGESLNR >gi|284795420|gb|ADDQ01000129.1| GENE 19 23031 - 25550 1807 839 aa, chain - ## HITS:1 COG:STM0571_1 KEGG:ns NR:ns ## COG: STM0571_1 COG1221 # Protein_GI_number: 16763948 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Salmonella typhimurium LT2 # 21 309 28 337 460 248 42.0 3e-65 MRLETYQHLVDILETSNTPMSTQEIATKIQLSRSVTSLYLNKLLEKGEVQQTGKKPVYWQ LTRATTPTTDVFRQYIGSQGSAKKAIEQCKAAMLYPPLGMPLLIHGASGVGKSFLAKLIY EYLKNEQIIGLEKFYTFNCADYANNPELLSSILFGHTKGAFTGAESEKQGLLAQANNSVL FLDEVHRLSNENQEKLFQFMDTGTFRPIGEEGKMVHSKVRLLFATTENPKKVLLPTFYRR ISVIVSLPNFKERPIRERIAILKNLFHREAKRMTKDINVDEEIFTALLENDEPGNVGSLS NKVQLLCASQLRKTLPNQPVVIGDATQPMIAIPLDKEVLEEDTLSSDIFATFEALFTKEK TLAHLKTELTQFIKYCLDDEITLENDYFLQNLVTEVQTKNKLIINQPEQTEKPMKDVAKL LKILPPTFNETMLLPVQAQLKEHYPRTVSLVKNLVSPLPEEYRFLTEVLLSVLLSGEISE TIPYQALLVAHGESTATSIQAVANKLCGTYIFDAINMPLTSSVRDIVAEVKDWLSQRDTS QGVIMLVDMGSLTQLYKSLKPQILGELLVINNLTTAYALEIGHQLMNEQLFYGIAKTAEK KFKTDVQYFEGFSVEKNIIVSSISGLDIAKQIKQICQKYLYTDIKVITLKYKDLVNTLDI ANAEENYLKETSLILTTSYLDNHTNVASVNLLDMLDEDAGTQLMEPFQNLMHPNNIDSMI NEFVHFFSKEGLSEKLEFLNPDVIIKQVENVTKNIEKRFDLTLSGKMKFNLMMHNALMVE RTMLGVEDYEVPANLEELTINQKPFFQNAKNIFYTLEQFYRIEISNWELYVIYEILSSR >gi|284795420|gb|ADDQ01000129.1| GENE 20 25698 - 26525 827 275 aa, chain - ## HITS:1 COG:SPy1060 KEGG:ns NR:ns ## COG: SPy1060 COG3716 # Protein_GI_number: 15675052 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Streptococcus pyogenes M1 GAS # 1 264 1 264 275 423 80.0 1e-118 MKLKENLSKEEKKMMRSVFWRSWTMNASRTGATQYHAVGVMYTLLPVINRFYKTKEERAE ALVRHTTWFNATMHINNFIMGLVASMEKQNSEDENFDASSITAVKASLMGPLSGIGDSFF WGILRVIAAGIGISLASTGSPLGAIVFLLLYNVPAFLIHYYALYSGYSIGESFIQKMYES GGMKILTKVSSMLGLMMMGSMTASNVKFKTILEVSVKGSKDVVKIQDYLDQLFVGIVPLA VTLLAFWLLRKKVNVNVVMFGIMFLGILLGLLGIC >gi|284795420|gb|ADDQ01000129.1| GENE 21 26522 - 27337 1022 271 aa, chain - ## HITS:1 COG:SPy1059 KEGG:ns NR:ns ## COG: SPy1059 COG3715 # Protein_GI_number: 15675051 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Streptococcus pyogenes M1 GAS # 7 271 1 263 263 342 80.0 4e-94 MLMHATMAALAVFICFAGNYLTGQSMMERPLVVGLVTGILMGDMKTGVLMGASLEAIFLG NVNIGGVIAAEPVTATTLATTFAIISNVEQKAAMTLAVPIGMLAAFVVMFLKNVFMNIFA PSLDKAAREGNQKMVVTLHYGTWIIYYLIIASISFIGILAGSGPVNLFVESIPQNLMNGL SAAGGLLPAVGFAMLMKLLWDNKLAVFYILGFVLTAYLQLPAVAVAVIGTVICVVSAQRD VEFRDILKRKPAASSAVEGSAKEIEEEDFFA >gi|284795420|gb|ADDQ01000129.1| GENE 22 27354 - 27845 728 163 aa, chain - ## HITS:1 COG:SPy1058 KEGG:ns NR:ns ## COG: SPy1058 COG3444 # Protein_GI_number: 15675050 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Streptococcus pyogenes M1 GAS # 1 163 1 163 163 222 77.0 2e-58 MITQVRVDDRLIHGQVAVVWTKELNAPLLVVANDEAAKNEVMQMTLKMAVPNGMKLLIRS VDDAIDVFNDPRGKDKRIFVIVNSVADATKIAKNVTDIESVNVANAGRFDKSDPATKTMV FPSVQLNPEELEAAKELASLTHVESYNQVLPTNSKLSLKQAVN >gi|284795420|gb|ADDQ01000129.1| GENE 23 27858 - 28277 599 139 aa, chain - ## HITS:1 COG:SPy1057 KEGG:ns NR:ns ## COG: SPy1057 COG2893 # Protein_GI_number: 15675049 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Streptococcus pyogenes M1 GAS # 1 139 1 140 141 146 56.0 9e-36 MKRKFLIASHGNLAKGFQSSLDILADKGKELAVINAYVTPEDYTPIIQTFLQSLGAEEQA IILTDLYGGSVNQKIVQEVMTTKPDNVFIISNANLAIALSLIFLKEGEKLTKEDIQAAIA EAQIQFVELNPSNEEENFF >gi|284795420|gb|ADDQ01000129.1| GENE 24 28535 - 29470 963 311 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 301 1 303 311 375 65 1e-103 MTDALVIQDLRKVYASGVEALRGIDLTVEEGDFYALLGPNGAGKSTTIGIVTSLVNKTSG KVKIFGYDLDTEMVRAKQQIGLVPQEFNFNPFETVQQIVVNQAGYYGVSRKEAMKRSEKY LKQSNLWEKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRREMWAFLQ ELNAQGTTIILTTHYLEEAEMLCRNIGIIQSGELIENTSMKHLLAKLQFETFIFDLAPYT QAPVIEGYQSVFEDELTLAVEVERNQGVNHLFEQLSQQGIKVLSMRNKSNRLEELFLKIT EDTYHREDQHV >gi|284795420|gb|ADDQ01000129.1| GENE 25 29463 - 30233 803 256 aa, chain + ## HITS:1 COG:lin0673 KEGG:ns NR:ns ## COG: lin0673 COG0842 # Protein_GI_number: 16799748 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Listeria innocua # 1 256 1 256 256 373 84.0 1e-103 MFSLYFTALKSLAVKETNRYLRIWVQTLVPPVITTSLYFVIFGKMIGGRIGDMGGFSYME FIVPGLIMMSAITSSYANVSSSFFSQKFQKNIEEILVAPVPTHVIIWGFVIGGVGRSILV GALVTIISLFFVPLHVVSWLMVIMTLLMTAILFSLAGLLNGIFAQSYDDVSIVPTFVLQP LTYLGGVFYAISMLPPFWQAVSKVNPIVYMISGFRYGFLGVQDVPIGISMTILILFIVVL YGICWYLVETGRGLRS >gi|284795420|gb|ADDQ01000129.1| GENE 26 30422 - 31396 1166 324 aa, chain + ## HITS:1 COG:BS_yfjN KEGG:ns NR:ns ## COG: BS_yfjN COG0042 # Protein_GI_number: 16077870 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-dihydrouridine synthase # Organism: Bacillus subtilis # 1 320 1 320 325 490 76.0 1e-138 MSKNFWATLPKPFFVLAPMEDVTDVVFRHVVKEAGAPDVFFTEFTNSDSYCHPEGKDSVR GRLVFTEDEQPMVAHIWGDKPEFFREMSIGVAEMGFQGLDINMGCPVPNVAERGKGSGLI LRPEVAAELIDAAKAGGLPVSVKTRIGFTEMAEMEAWITHLLEQDIANLSIHLRTRKEMS KVDAHWEVIPQIMAIRDRVAPQTTITINGDIPDRQKGLELAEQYGVDGIMIGRGIFKNPY AFEKEPKTHTPQELLGLLRLQLDLQDKYAELVPRSIVGLHRFFKIYVKGFPGASDLRAQL MNTKSTDEVRQLLATFEAEHGVLD >gi|284795420|gb|ADDQ01000129.1| GENE 27 31454 - 32989 1239 511 aa, chain - ## HITS:1 COG:SPy0714_1 KEGG:ns NR:ns ## COG: SPy0714_1 COG0803 # Protein_GI_number: 15674772 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Streptococcus pyogenes M1 GAS # 1 319 1 322 322 322 52.0 1e-87 MKKFTLPLLAALSLILFGACGKTNTSDKTADGKEKLSIVTTFYPMYDFTKNIVGDEGDVK LLIPAGSEPHDYEPSAKDMATIHDADVFVYHNENMESWVPKAAKGWKKGAPNVIKGTENM VLLPGSDEDGHDHDHEHGEEGHHHELDPHTWVSPHRAIQEVTNIKEQLVKLYPKKAKTFE TNAEKYLTKLTALDKEFQTALKDAKQKSFVTQHAAFGYLALDYGLKQVPIAGLTPEQEPT AGRLAELKKYVTDNQIRYIYFEKNANDKIAKTLADEANVQLEVLNPLESLTQKQMDNGED YLSVMKENLTALKKTTDTAGKEAQPETSEKTEKTVANGYFKDSEVAERTLTDYAGNWQSV YPLLKDGTLDQVFDYKAKLKKDKTPAEYKTYYDAGYQTDVDHINITDSTIEFLVNGKPQK FTYKAAGYKILNYAKGNRGVRFLFETDDANAGRFKYVQFSDHNIAPTKATHFHIFFGGDS QESLFNEMDNWPTYYPSDLSKQEIAQEMIAH >gi|284795420|gb|ADDQ01000129.1| GENE 28 33010 - 33132 166 40 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEKTDLSSAYRRLKSPNIKTRKRALKIIKEHKRNKQKKIA >gi|284795420|gb|ADDQ01000129.1| GENE 29 33166 - 34140 899 324 aa, chain - ## HITS:1 COG:BMEI0036 KEGG:ns NR:ns ## COG: BMEI0036 COG0523 # Protein_GI_number: 17986320 # Func_class: R General function prediction only # Function: Putative GTPases (G3E family) # Organism: Brucella melitensis # 3 318 5 360 388 164 30.0 2e-40 MGIPITIVSGFLGAGKTTLINHALAQSPFPKEEIIIIENEFGQTGVDHALLLQTTERIIQ LNNGCMCCSLRGDLLASLSAILEVYQEEQQTVAQVILETTGIADPQPIIQTILTTPHIKN HFYIDSLLTVVDGHHWQQQLQEAEAIKQLALADRLFFSVKEPADSTQLPTFQETLRTINP FADILSFQANEPLLASDFFQLNKFTATLTEHEMTHSPHEHAHEHHHHTFHSLTLTASSAL NEPLFTRWLDWLMYTHQEKLYRFKGILALQEHDLAIAMQGVNQQVAFQMTNQPPQETTIV LIGKELETKKIQETFQTLNKIATP >gi|284795420|gb|ADDQ01000129.1| GENE 30 34156 - 34305 247 49 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29377651|ref|NP_816805.1| 50S ribosomal protein L33 [Enterococcus faecalis V583] # 1 49 1 49 49 99 100 4e-20 MRQTITLACAETGERLYLTSKNKRNTPEKLQLKKYSPKLRRRALFTEVK >gi|284795420|gb|ADDQ01000129.1| GENE 31 34416 - 34685 457 89 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29377650|ref|NP_816804.1| 30S ribosomal protein S14 [Enterococcus faecalis V583] # 1 89 1 89 89 180 100 2e-44 MAKKSKIAKAKKQQAMIAKYAPIRQALKEAGDYEGLSKLPKDAHPSRLKLRDQTDGRPRG YMRKFGMSRIRFRELAHQGLIPGVKKASW >gi|284795420|gb|ADDQ01000129.1| GENE 32 34892 - 35284 372 130 aa, chain + ## HITS:1 COG:lin0902 KEGG:ns NR:ns ## COG: lin0902 COG1765 # Protein_GI_number: 16799975 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Listeria innocua # 5 129 1 126 126 83 35.0 1e-16 MVERLTIIRGVEKFELQTKTARWVLAKEEGYSPVQMLVSAIGACGGYVYQSVLENSHIPF EFEKIEVTYSREVERRAQPLKQVTILFYVTVPEAFQERATRCLKLVSPNCPVIQSLAERI TVEETVVFKK >gi|284795420|gb|ADDQ01000129.1| GENE 33 35646 - 36368 366 240 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 227 1 230 245 145 36 6e-34 MIELVNVSKVYQETHALKNIHFSVQLGEIVGIVGKSGSGKSTLLRLLNLMEQPSEGEILI DGRNVQTFSKKEVRQQQQQMGMVFQHYNLLENLKIYDNVALPLKLLKEKQPEKIERLLTF VDMAHKAEAYPAQLSGGEKQRVSIARALSRNPKWLLCDEATSSLDEENTESVVRLLHKTH QEFRPTIFFVSHELETVKRLCNRILVMEKGQLIGEFLNNPQQYEEEPLSYLEKVERSLRP >gi|284795420|gb|ADDQ01000129.1| GENE 34 36365 - 37036 725 223 aa, chain + ## HITS:1 COG:STM0512 KEGG:ns NR:ns ## COG: STM0512 COG2011 # Protein_GI_number: 16763892 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Salmonella typhimurium LT2 # 12 222 6 216 219 120 42.0 3e-27 MTFSETFAEYWPSMLVGLKETGIMMSISMAICLLVGLPLGLGLFLANPKVKGHQPWLYWV LNFIVTVIRSFPYLLFVIALIPVTRSVLGKAFGPIPSSVPLSIVAIAIFARLVEQVLLDV PEEIYFLANSLGTSKVQYIWHFLLVEARSGLVLAYTTTTVSMVSYSTVMGVVGGGGIGDF AVRVGYQRYEYGIMYVAIVIMIALVFILQMLGNFIAQKLDKRK >gi|284795420|gb|ADDQ01000129.1| GENE 35 37049 - 37867 1104 272 aa, chain + ## HITS:1 COG:Cj0772c KEGG:ns NR:ns ## COG: Cj0772c COG1464 # Protein_GI_number: 15792110 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Campylobacter jejuni # 34 272 24 257 257 142 38.0 6e-34 MKKFYLATFAVIATVILAACGGNKQADQKEDKEITVAVQLESSKDILEIAKKEAEKKGYK INIMEVSDNVAYNDAVQHDEADANFAQHQPFMEMFNKEKKADLVAVQPIYYFAGGFYSKE YQDAKDLPENAKVGIPSDPTNEGRALAILNANGVIKLKEGVGFNGTVADVVENPKNITFE SIDLLNLAKAYDEKDIAMVFCYPAYLEPAGLTTKDAILLEDEEASKHYALQVVTRKGEKD SEKIKVLKEAMTTKEVAEYIKKNSKGANIPAF >gi|284795420|gb|ADDQ01000129.1| GENE 36 37958 - 39727 1888 589 aa, chain + ## HITS:1 COG:SA0250 KEGG:ns NR:ns ## COG: SA0250 COG3275 # Protein_GI_number: 15925963 # Func_class: T Signal transduction mechanisms # Function: Putative regulator of cell autolysis # Organism: Staphylococcus aureus N315 # 1 582 1 582 584 623 55.0 1e-178 MVELFILMMERVGLIILLAFLLVNVPYFKRVLLSREKMSSKVQLILIFGLFAIISNFTGI EIAKNQIVPNNLLTYLSSNASIANTRTLVIGVSGLVGGPIVGSTVGLIAGFHRVIQGGGH SFFYVPASLIVGLIAGFLGSRMAKQTVFPSAGFSAIVGACMEMIQMIFIFFFSGDLSDGA TLVRFIALPMILLNSVGTFIFMSILTTTLKQEEQAKAVQTHDVLELAAETLPYFREGLNK NSSKKVAEIIKHYTKVSAISMTNSHQILAHVGAGSDHHIPELEVITELSREVLRTGRMTI AHAKEEVGCSDPNCPLQAAIVIPLFSHQQIVGTLKMYFTDPAQLTHVEEQLAEGLGTIFS SQIELGEAEVQSKLLKEAEIKSLQAQVNPHFFFNAINTISALMRKDSEKARKLLLQLSKY FRGNLQGAVQTTIPVSQELEQVKAYLSLEQARFPNRYQVTFDVEEAVASEKVPPYAIQVL VENTIKHAFGSRKENNQVRVVVKAKQHKLHVDVYDNGQGIPEERRLLLGKTTVTSEKGTG TALENLSRRMANLYGSEGCFLIENLETGGSHVHLEIPMEQEELDARINR >gi|284795420|gb|ADDQ01000129.1| GENE 37 39708 - 40436 717 242 aa, chain + ## HITS:1 COG:BS_lytT KEGG:ns NR:ns ## COG: BS_lytT COG3279 # Protein_GI_number: 16079944 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Bacillus subtilis # 1 239 2 239 241 202 45.0 3e-52 MHVLIVDDEPLAREELSYLVSQHPQVTSVAEADSVAEAMEEMMDQKPDLLFLDIHLTDES GFDLAEKLTHLKKAPYLVFATAYDQYALKAFQVNAKDYILKPFEEEKITQVIEKASKEMA QAVPENTAEKGPKSEAIPIQGEDRIYLVAPEDIYLVSVEERQLSIFVDQQVYKMTGTLNS IEQKLPATLFIKTHRSFILNRTKIQEIQPWFNNTLQVILTNGSKVPVSRSYVKEFKEKLG LS >gi|284795420|gb|ADDQ01000129.1| GENE 38 40588 - 41007 524 139 aa, chain + ## HITS:1 COG:BS_ysbA KEGG:ns NR:ns ## COG: BS_ysbA COG1380 # Protein_GI_number: 16079943 # Func_class: R General function prediction only # Function: Putative effector of murein hydrolase LrgA # Organism: Bacillus subtilis # 3 134 4 135 146 112 58.0 3e-25 MEKKVYSFLQQAAVFAIIMLIANGLAFISPIPMPASVIGMVLLFIGLCTKVVKLEQVEGL GNSLSTVITFLFVPSGISLVNSLGIMQQFGVQIVFVILVATLALLATTGWTGAFLLHMKD ARKEKEPAATKKAKGEVRA >gi|284795420|gb|ADDQ01000129.1| GENE 39 41004 - 41687 1007 227 aa, chain + ## HITS:1 COG:BS_ysbB KEGG:ns NR:ns ## COG: BS_ysbB COG1346 # Protein_GI_number: 16079942 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative effector of murein hydrolase # Organism: Bacillus subtilis # 1 226 5 230 231 242 66.0 4e-64 MNPYVGIIISLAVFGIGTWLFKKSKGFFLFTPLFVAMILGVVVLKVTGISYEQYNEGGKY ISFFLEPATVAFAIPLYKKRDVLKKYWLEILTALTIGSFGSLVAVYFAGKVIGMDNHLVA SILPQAATTAIAVPISQTVGGIASITAFTVIFNGVLTYALGRIALKWFKINNPIAKGLAL GAAGHALGVAVGIEMGETEAAMASISVVVVGVVTVLVVPFFATVIGL >gi|284795420|gb|ADDQ01000129.1| GENE 40 41884 - 42429 624 181 aa, chain - ## HITS:1 COG:BS_yueJ KEGG:ns NR:ns ## COG: BS_yueJ COG1335 # Protein_GI_number: 16080227 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Bacillus subtilis # 2 180 3 181 183 238 59.0 6e-63 MKALISIDYTNDFVATDGKLTTGAAGQAIETALVQQTKHYFYNGDFVVFAIDGHDPLDHY HPENKLFPPHNVLGTDGRNLFGSLADFYQAHKNEATVYWMDKRHYSAFSGTELDIRLRER GITELCLTGVCTDICVLHTAVDAYNLGYQLMIPERAVASFDEQGHEWALRHFKQTLGATI L >gi|284795420|gb|ADDQ01000129.1| GENE 41 42595 - 43608 847 337 aa, chain + ## HITS:1 COG:SA0610 KEGG:ns NR:ns ## COG: SA0610 COG0657 # Protein_GI_number: 15926332 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Staphylococcus aureus N315 # 60 334 50 318 347 153 31.0 5e-37 MKRKIVRFILWLLGILVVICLGVFLAFQLSPKPGAWVINQLFAGEVEIKDSASYDKALPN VQLQENQTYPSSRKKNTFDLYYPQTSKQAVPVVLWVHGGGYVGGDKSGMKEFATRLVADS SVAFISMNYELAPDAPYPSQLQQVNELVQFLLEKKQAYPMLDLSKLFIGGDSAGAQIALQ YATVQTNANYAKELGMTAALPASHLKGTLSYCGPVDLKQMANQQSDNRFMKFFVKTVAWS LLGTKDWQTSAELQEVSLVDKVTKEFPPTYLTDGNSFSFQEQGLALVQRLKTLNVPVTAL FFKDKKATITHEYQFDYQTKEAKQCYQETVQFVNTYK >gi|284795420|gb|ADDQ01000129.1| GENE 42 43984 - 48831 4748 1615 aa, chain + ## HITS:1 COG:no KEGG:EF3188 NR:ns ## KEGG: EF3188 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 63 1615 1 1554 1554 2155 81.0 0 MKKKIAVLLATCLLVQPFLSVSAWAIEGEQQTERTQTQPKTAETSTSEATKESSAHSIEQ SSMTESSAITEKVTTSSTETKPSEEQKQITLTFETTDQALFLNDAKSYQVVKEKNQPLRT EELPKWANSEENTTFVGWSYQGKTYTNEELLQLEFSEDTQLTAVFKQKRTRMARAVSVDQ SIADTIAPADKTKVIVVPSPAGDGAAYKEYASTEAGLKEALFDLYQQGNNGDFTLYIGTN ITTGTATTAKVIPDTVTASNMTFYALQGKVNHLVITGNSADPISMDTTLPTGSKTLALGI VHFGTDITLRNISYTGSQMYLNGHSLSLNGGSIGNGFSVFGGTDSGDVTGNPVITVNSTG SGTWYFYGGNNNGGTLKGNPTLLINNTVSGINTLSGGANLGTVDGNVTVSVKRINGALSN YYGAGIGTAANPISVTGSVSNELDIAVEANSSFRMSTYYGGALYGNINGTIKNSLSGYGG WSSRGPYVGGSGRGNIGTNRGTNAISTTLDASNYTTYGPSIIGANRYNGTITGNIENTVI GGTTDAQGGIGNFDGGSGTEADRLSKAALGASNEGTYDAYTSEQRAKLAFDSATYKILGN IHSHLVKGSFGNADLWRTTAAGVGGYVEGKATIEVGTQTGDGTAGGDGLVYKGSRPTDTN YSSSRNNLANAKDFDIAGGGLVIGRDAWTIYIRGESNTVINNAVARRTYGGLFSGVVEGN TSNTLNGGIVDTLEGSGYEGGRVYGNAQATVRNGQVDWFLSGGGWNDKKIVGNVGVTVYD GVINASMGASYGASSDHTVTGNSNNIVYGGDFSGTPREGTNGFSGGITNVGSLLGNANLT IDLRNYNREFKLPSGTFISGGVPYNGTTNLGTDASNTITLNIYTKPGSDVLNGAAIYGDG ARTSSYTKSGKIIMNIQATGSSIGNLYATNYGNAPTTGLLRDVEINLQGAKTINGLSGGN ATDSFTNTIVSKNAQKVVINIGENVDGTNNYQTEPLNATGLGVVNFTELNVTNGIKLMAN GGNIKNGVSATAANHSTTYNEFGSIHLSKNAGIGITNTANLISASKLTVQDHATLETIPG TGKVNIADFEAVDPTKDELLWIKPTTDTTALVDSTGTWFGNVKAYQVLTINPTVNNATKL TPTTFHGIEKATGKTFIGDNDVTKGANGYGIAIPGSIIDYEVETPGIVAGAGTISHDVKE VKAGNAPLTLQAWGTEVAGQKVQKGRLMIPTSSALTPTLSFLPDEVTGSWLHQGTVKSSE VGSAIEQIPEQKDTTPLSWKATNMNYSYQVKVQFSNKVELSGQSVIVTEDEAAQLTTVDK VIEMLGAKGRPFFKTSLKETDLPQIQAPLAEKTVSRTHDIQLEAGTSGDNLQNKTVHLVV VKNESVLAKDRSFALYATSAHLKLKEANGLTNSDELAQWTQATVIFADGRANQTPSLDAA TFQAIQQAKPEELAKTVPANYQFTEAGETLNKKVNVSISGELTLEKVPKTIDFGKQKISA KPEVYWPTLSDDLVVQDTRGTESTPWKLNVQVTNPLTNGTNQLEDLSLVTDKGEFLLNKG DTVVTENEGSGSGSYTINQGWGAANQRGLKLSVPVEKQKVGEFKGTLSWSLVMAP >gi|284795420|gb|ADDQ01000129.1| GENE 43 48851 - 49240 211 129 aa, chain + ## HITS:1 COG:no KEGG:EF3187 NR:ns ## KEGG: EF3187 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 129 1 129 129 211 99.0 7e-54 MKKYLLLSCFLGLFSFCHSDTAFGEAAYENSGVVSFYGTYEYPTEESTTATSNSSTTTEP TKPADGGASSVLSSGVYGSRQGRLPATGTINQAPFIYLGISLITIGILFIKRRREDEKNS ISSSRDCRI >gi|284795420|gb|ADDQ01000129.1| GENE 44 49197 - 49931 1078 244 aa, chain + ## HITS:1 COG:no KEGG:EF3186 NR:ns ## KEGG: EF3186 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 244 1 244 244 405 99.0 1e-112 MKKTVLAVVGIVGFSGVLATQQAFAEDINVNYTSNGAITFEPDTDPTKPVNPTNPDEKVE PEDPTDPTGPKPGTAGPLSIDYASSFQFGAQKITSDTKDYYAQIQTFKDGTTGPNYVQVT DKRGTQEGWTLSAVQNGQFKTVQNEELVGAALSIANAGVTSIVDAAYAPTPTAAHTFVPG TEVELVKAEDGKGMGTWVYRFGKDATEGATAVKLNVPGKAIKLAKEYRTTLTWTLKSVPT NVGG >gi|284795420|gb|ADDQ01000129.1| GENE 45 49936 - 50736 848 266 aa, chain + ## HITS:1 COG:no KEGG:EF3185 NR:ns ## KEGG: EF3185 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 266 1 266 266 457 99.0 1e-127 MKKTVVYSLLFGTMLLGATVPAEAATVVFDSEQSIVFTPSTDGTDPVNPENPDPEKPVRP VDPTNPDGPNPGTPGPLSIDYASSLDFGSNEISNKDQTYFARAQTYKNPDGSASELATAN YVQVSDLRGTNAGWVLKVKQNGQFRNAETLHKELTGATVAFTEPSVRSNATDVLPPTATA NIQLDAAGAETVVMQAPEKTGAGTWITLWGQAEKVTEKNQQGQQVNATITRAISLTVPGK TPKDAVQYKTTLTWLLSDVPVNNGGK >gi|284795420|gb|ADDQ01000129.1| GENE 46 50737 - 51495 1029 252 aa, chain + ## HITS:1 COG:no KEGG:EF3184 NR:ns ## KEGG: EF3184 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 252 1 252 252 366 99.0 1e-100 MKKTKVMTLMATTTLGALALVPMSALAVDGGEYQTNGAIQFAPNTNPTNPVDPTNPDPDK PITPVDPTDPTGPKPGTAGPLSIDYASSLSFGEQTITSKNMTYYAETQKYKDNAGADQEG PNFVQVSDNRGTETGWTLKVKQNGQFKTEANQELTAAKVTLSNGRVVSASQSAKPTTAPA TIELNPTGAESVVMAAGDKEGAGTYLMSWGDSVDAAKTSISLEVPGSTTKYAKKYTTTFT WTLTDTPANTGN >gi|284795420|gb|ADDQ01000129.1| GENE 47 51607 - 52683 1163 358 aa, chain + ## HITS:1 COG:no KEGG:EF3183 NR:ns ## KEGG: EF3183 # Name: not_defined # Def: cell wall surface anchor family protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 358 1 358 358 635 100.0 0 MNRWKVYATVIACMLFGWIGVEAHASEFNFAVTPTIPENQVDKSKTYFDLKMAPGAKQTV EIQLRNDTDEDITIENTVNSATTNLNGVVEYGQNGIKPDKTLRFNLKDYVEAPKEIILPK HSQKTLPLTITMPKDSFDGVMAGGITLKEKKKETTTSADQSKGLAINNEYSYVVAIILQQ NETKVQPDLKLLGVKPGQVNARNVINVSLQNPQAAYLNQLHLINTVSKGGETLYQSDTED MQVAPNSNFSYPISLKGERLTPGKYVLKSTAYGVKDEKGTYQVKGANGEERYLYKWEFTK EFTISGDVAKELNEKDVTIKGTNWWLYLLIALIILALLLLIFFLYRKKKKEEEQQSEQ >gi|284795420|gb|ADDQ01000129.1| GENE 48 52785 - 53270 463 161 aa, chain + ## HITS:1 COG:no KEGG:EF3182 NR:ns ## KEGG: EF3182 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 161 1 161 161 219 100.0 2e-56 MRKKYLFLFSSLLIFTAVEIEPIQTLATPIYNPLEPTEEIQPKPESITPQEKSEPEQPAP TPPEDQKTTVPSEEKKPSPKKKDKPVEKPAMSKEKKKQTKETTAHPLQVNKDFVFPNGLG AGGDEESESYLAAVGYFLSGNGLYGKKMDVREVYDIDDVFK >gi|284795420|gb|ADDQ01000129.1| GENE 49 53254 - 54726 850 490 aa, chain + ## HITS:1 COG:no KEGG:EF3181 NR:ns ## KEGG: EF3181 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 480 1 480 483 869 99.0 0 MMFLNKVDKRKIALFQLLENAPMLTESKETVMQELELSEFIVNKTVAELNADFIEFGLSE DFQIVSDGIFLTLNESGTETSATLIDCYIKESLRFAMFQDFFFQRFDSVNEFALEHFVSH TLAYKEFKELKKMLENYQITINKEFHLVGNETNLREVTTLVFLQLYQRDFSLYGKKVLEQ IRNFELFFSEKVHLNQRAGYAQAKCFHFLAVSLVRTQQQFYVEKKVDSQVLKQLAGDNQQ NVFNWLESLQIPEPQRTNEGNYLLLFLIAEEWLQVASAALCQRFAEIQQLNRDLLSYLKI QFQLSEEVLQGFEQKVTIVHFKLFHFPIEANYSYRKMDITYFAETYTEYFSASRQFIQEQ KTNPAVWDARRFLFYRYLLLMVDALPLKKVLAPITLCVDFSFGEAYNRMIQKNIEKITEW NIIFKAHVDESVQLILSDIHFVDWPEITQIIWLAPPRPVDWSHFIKTLSALRPHSGEENK VGTAPLSSEK >gi|284795420|gb|ADDQ01000129.1| GENE 50 54963 - 55460 512 165 aa, chain + ## HITS:1 COG:BS_sigV KEGG:ns NR:ns ## COG: BS_sigV COG1595 # Protein_GI_number: 16079766 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Bacillus subtilis # 7 161 2 157 166 88 33.0 6e-18 MVFDGWKRKKQIRALETLVDTKYEKMYRIAFNYTHSKEDALDVIQESFEKALKAIQKGSD IKDFDAWFFRILLSVATDYWRKKKREAVHIEKDEQVLALLNNPQRSFLEIEEIINQLDSP NREIILLKFFEGFTLKEIALILDINENTIKTKMYRSLNELRSLLN >gi|284795420|gb|ADDQ01000129.1| GENE 51 55485 - 56369 735 294 aa, chain + ## HITS:1 COG:no KEGG:EF3179 NR:ns ## KEGG: EF3179 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 294 1 294 294 530 99.0 1e-149 MEDFVKSVVKNFSKEYRQQPLPTDLQAEVKARFHKEKKRYTWLRFRNRSLQSSLVVACGF VLSVNLFPGFSEAARNIPVLDKIVQLVTIKTLTAKKQESEVNIDVPKIQTSQESSVADTL NKKYLKEAQTEFQQVKGQLFDGSRVSVTGDYEKVVDDRRFLVVKRTFTEIKGSSATTTKY DTIDKRANVVVSLPLIFKNDFYIDVISSEIKQQIADQMKNDSNKIYWSEKEDAPSDVQPF KKIKKDQPFYINEKHQLVIVFPQGEIAPYYMGTPEFVIPNQVIENELAAPNYLK >gi|284795420|gb|ADDQ01000129.1| GENE 52 56499 - 57635 1459 378 aa, chain + ## HITS:1 COG:lin0289 KEGG:ns NR:ns ## COG: lin0289 COG0624 # Protein_GI_number: 16799366 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Listeria innocua # 1 377 1 378 378 382 55.0 1e-106 MEKSEKISILQDVVKIKSVNGNEEEVAIYLQNLLKKYEIPSELVSYAPNRSSLVAYLGEN REKVLGFSGHMDVVSEGDESQWTFPPFAAHIEGNKLYGRGATDMKSGLVAMVLAMIELKE KKVPLNGAVKFLGTVGEEVGELGAGQLTEKGYADDLSALVIGEPTNYNLMYAHMGSINYS VVSHGKEAHSSMPEEGINAINNLNEFITEANQQMAEVTANYENPELGRTIHNVTVIKGGT QVNSIPGQAALQGNIRSIPEFSNDQVIALLQKIVDELNKKEKHQLELTIDYNKIPVKAEK DSALIQAIQAQFDQPLPLVTSAGTTDLAEFTKSDNTFDCVVFGPGVTTTAHQVDEYVEID NYLDMIDKYQAIAKSYLN >gi|284795420|gb|ADDQ01000129.1| GENE 53 57688 - 58479 721 263 aa, chain - ## HITS:1 COG:no KEGG:EF3177 NR:ns ## KEGG: EF3177 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 263 1 263 263 484 98.0 1e-135 MDLHLTVDLKKTKTLIDLADQAHLIIEQTTKLPKKEAAILFLLRDNQLVALGLAEEKSTY KEVSFDYSILLKPTWDTELAYLAQAFLDDAKESGLTLEATPATVKIPKSAVATVTNYKET VTFILERFGYSLFKKPAPKKARPAKARHKWTKEVSQIPFYIDTRQSKATVFWQKRNEMLI KAGATMMPEAPLNKDGSVGFSARFGEKLRDERKGQFKDFVTTEDIILKSVNEVGLFLYFA GTNSWLELVDENGKTLNEWTVVE >gi|284795420|gb|ADDQ01000129.1| GENE 54 58643 - 59026 235 127 aa, chain + ## HITS:1 COG:VCA1051 KEGG:ns NR:ns ## COG: VCA1051 COG3304 # Protein_GI_number: 15601802 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Vibrio cholerae # 1 119 2 130 143 95 44.0 2e-20 MKTLGNILWFIFGGFFGGLSWLFAGVIWCITIIGIPIGLQCFKLAGLSFWPFKKRVVYSD SGVSLVVNIIWLIISGLPLAIGHCISGLLLCLTIIGIPFGQQSFKLAKLALMPFGARVVS TNDFYFE >gi|284795420|gb|ADDQ01000129.1| GENE 55 59115 - 59540 521 141 aa, chain + ## HITS:1 COG:BS_ywnA KEGG:ns NR:ns ## COG: BS_ywnA COG1959 # Protein_GI_number: 16080716 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Bacillus subtilis # 3 135 2 132 133 116 50.0 1e-26 MAMSTKLSVAIHILSLIETGPQEQVTSEYIASSVNTNPVVVRRLMSQLKKAGLIHSMRGA NKNTLLKKPEEISLYEIYTAVELEREIFNIHQNPNPNCSVGANIQSVLETEFTKVQQKME EELKSITLADVIHEIEVKRDK >gi|284795420|gb|ADDQ01000129.1| GENE 56 59608 - 60228 926 206 aa, chain + ## HITS:1 COG:BS_ywnB KEGG:ns NR:ns ## COG: BS_ywnB COG2910 # Protein_GI_number: 16080715 # Func_class: R General function prediction only # Function: Putative NADH-flavin reductase # Organism: Bacillus subtilis # 1 204 1 208 213 192 50.0 4e-49 MKVAVLGATGKEGQLLLAEAKRRGMDVTAIVRNASKITDGTPTIEKDVYQLTTEDIQAFD VLISALGFPDVQDFPKSTQHLIEILTNQKTRLFVVGGAGTLYVDPEHTTQLKDTPSFPAE IQPLASAMGEALNLLKEAQNIHWTYISPAAMFDAEGPATGHYEVAGEELTTNSQGDSYIS YADYAVAMLDEVESNAHPNQRISVYQ >gi|284795420|gb|ADDQ01000129.1| GENE 57 60308 - 61507 1394 399 aa, chain - ## HITS:1 COG:no KEGG:EF3173 NR:ns ## KEGG: EF3173 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 20 394 20 399 401 392 81.0 1e-108 MSVVLGLLGLLGLLVSGGLTIKALIKKQPKKQYGYAALASAALFIGGVATTDSSPTLSLD AESVETDANGSATIKGEYDGNSKLTANGKEVKTKDKTFAYKVKLSDEKTQKITFVAEKKD TKVEKSVEVTPSKEFIASITDSEQELAKTEKALAYAEKQPSQKNYDEAATLVSSLSQEYE EYNDRLEKIKEAVPVDEAVTTAEKSKSKSDYQAAEKLVAAAPVGKEGFQQRLTTVQTAIA EKEKNEQLVASATAAVEKAEQEPTNEAYYNEAIKQIDALNSPNQALTKRVAVVKTQLDAH KEKQRKEAEAQKLAAEKAQKEQAEAAAKAQAEAEAQQAAQAPVEVETAAANAGPETSTTV LVTSTGSKYHARKCGNGTYTETTLEAALANNLTPCSKCY >gi|284795420|gb|ADDQ01000129.1| GENE 58 61699 - 62943 214 414 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 268 406 759 898 904 87 38 3e-16 MKAEIIAVGTELLLGQVVNTNATFLSEELAALGIDVYYQTVVGDNGGRLETLLTEAEQRS DLIVLCGGLGPTEDDLTKQVVAQHLHKSLVEDQEGLNRLHQFFQQSKRPMTENNLRQVLA IEGGQVLQNPTGLAVGSFVTEGTTSYLLLPGPPNELIPMFQQAARPLLINAFPQEEQLIS RVLRFYGIGESQLVTEIQSLIAHQTNPTIAPYAKPNEVTLRLTVKTKDLVAGEELLTATE EKVLAKVGDYFYGYGDDNSLAKVTVDLLLQNGQTVTAAESLTAGLFQSTLGEIAGASKIF KGGFVTYSQETKENFLGISHELLEEHGTVSEACAKEMAEKARQLAKSNYGLSFTGVAGDP IEGQPTGTVWIGLAEEGQPTVAECFHFNRDRNYIRQSAVMRGLDLLRRRIINKK >gi|284795420|gb|ADDQ01000129.1| GENE 59 63057 - 64103 1515 348 aa, chain + ## HITS:1 COG:lin1435 KEGG:ns NR:ns ## COG: lin1435 COG0468 # Protein_GI_number: 16800503 # Func_class: L Replication, recombination and repair # Function: RecA/RadA recombinase # Organism: Listeria innocua # 3 346 2 344 348 508 79.0 1e-144 MADDRKVALDAALKKIEKNFGKGSIMKLGEKADQKISTIPSGSLALDVALGVGGYPRGRI IEVYGPESSGKTTVSLHAIAEVQRNGGTAAFIDAEHALDPQYAEKLGVNIDELLLSQPDT GEQGLEIADALVSSGAIDIVVIDSVAALVPRAEIDGEMGASHVGLQARLMSQALRKLSGS INKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKQGTDIVGNR TKIKVVKNKVAPPFKVAEVDIMYGQGISQEGELLDMAVEKDLISKSGAWYGYKEERIGQG RENAKQYMADHPEMMAEVSKLVRDAYGIGDGSTITEEAEGQEELPLDE >gi|284795420|gb|ADDQ01000129.1| GENE 60 64209 - 64304 56 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSEPIHIKQLSQTADYAAFVLKFKQFVTAET >gi|284795420|gb|ADDQ01000129.1| GENE 61 64500 - 66056 2088 518 aa, chain + ## HITS:1 COG:lin1436 KEGG:ns NR:ns ## COG: lin1436 COG1418 # Protein_GI_number: 16800504 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Listeria innocua # 1 518 3 520 520 608 73.0 1e-174 MVLNILLAIVGLIVGLGLGFVIAKSRHDKAINGAKISASSILENARKESETLKKEALLEA KEENQKYRSEIESELKESRLELKSQENRLIQREQTLDRKDDSLEKREGSLEEKEEKLGAR QQLIDEREKEVENLINQQHQELERIASLSKEEAKSIIMKSTEEELNHELTLMVKESEQRA KEESDRKAKNLLSLAIQRCAADSVSETTVSVVTLPNDEMKGRIIGREGRNIRTLETLTGI DLIIDDTPEAVVLSGFDPIRREIARMTLEKLIQDGRIHPARIEEMVEKSRKEMDERIREY GEQAAFEVGAHTLHPDLIKILGRLRFRTSYGQNVLNHSIEVAKLAGVLAAELGEDVQLAK RAGLLHDIGKALDHEIEGSHVEIGAELAAKYKENSVVINAIASHHGDVEATSVISVLVAA ADALSAARPGARSESLENYIRRLENLENISNSFEGVDSSFAVQAGREVRVMVKPEEISDL ESVRLVRDIRKKIEDDLDYPGHIKVTVIRETRAVDYAK >gi|284795420|gb|ADDQ01000129.1| GENE 62 66216 - 67013 940 265 aa, chain + ## HITS:1 COG:lin1438 KEGG:ns NR:ns ## COG: lin1438 COG1692 # Protein_GI_number: 16800506 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 263 1 264 267 380 67.0 1e-105 MRILFIGDVVGSLGREALATYVPKLKKKYRPQVTIANGENAASGRGITGKIYKKFLQDGV DVVTMGNHTWDNKDIFEFIDDAKKMVRPANFPEDVPGQGMVFVKVNQLELAVINLQARTF MVPLEDPFKKAAELVAIARKRTPLIFVDFHGETTSEKQAMSWFLDGQVSAVVGTHTHVQT NDARILPKGTAFLSDVGMTGPYDGILGMKREPIIEKFMTALPKRFEVVETGRTILSACIL EIDDQTGQAKMIEPIQISEDRPFQE >gi|284795420|gb|ADDQ01000129.1| GENE 63 67102 - 67473 574 123 aa, chain + ## HITS:1 COG:no KEGG:EF3168 NR:ns ## KEGG: EF3168 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 123 1 123 123 170 99.0 2e-41 MEPLNLDAQSNKELEKLLHLIGQDEVIQRYQAIEEKVKKNKKLTELVEEIKAAQKDAVQF AHYGKPTAEKEAIQRADAKTKEFDEHPLVVSYREQLIEANDLVQHVTALIQYRVNEELEK EGN >gi|284795420|gb|ADDQ01000129.1| GENE 64 67474 - 70050 2885 858 aa, chain + ## HITS:1 COG:lin1440 KEGG:ns NR:ns ## COG: lin1440 COG0249 # Protein_GI_number: 16800508 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Listeria innocua # 5 858 2 859 860 993 60.0 0 MPQKTKNTPMMEQYLSIKAQYKDAFLFYRLGDFYELFYEDAINAAQILELTLTSRNRNAD DPIPMCGVPYHAAQGYIDTLIEQGYKVAICEQVEDPKTTKGMVKREVVQLVTPGTVMNSK GLEAKDNNYLTAVLTDGNQFGFAYVDLSTGELKTAVLADEEGVLNQASALQTKEMVLGSG IPESLKENLSLRLNIIFSTQETVEENAEFSFLTNELINPLEIEITGKLLSYLSVTQKRSL SHIQKAVEYQPDHFLKMDHYSKFNLELSQSIRTGQKKGTLLWLLDETKTAMGGRLLKQWL DRPLIQERQIKARQEMVQSLLNAYFERLDLQAALTNVYDLERLAGRVAFGSVNGRDLIQL RTSLEQVPTIRQLIVGINQGEWDDLLVDLNPVEDLVALIATAINEEAPLQITEGNVIKDG YNDQLDEYRDAMRNGKQWLAELEAKERQETGIKNLKIGYNRVFGYFIEITKSNLANLEEG KYERKQTLANAERFITPELKELERLILEAEEKSVELEYQLFLAVREQVKTNIDRLQTLAK TISAVDVLQSFATISERYQYVRPTLRSNTKNLAIVEGRHPVVEKVLGHQEYIPNSIRMNP ETDILLITGPNMSGKSTYMRQLALTVVMAQIGCFVPAESAEMPIFDQIFTRIGASDDLIA GQSTFMVEMMEANQALRHATPNSLILFDELGRGTATYDGMALAQAIIEYIHREVQAKTLF STHYHELTVLDETLKGLKNIHVGAVEKDGEVVFLHKMMEGPADKSYGIHVAKIAGLPSPL LERAATILSALEAEETTIPSSVHHEEVSEVHEETEQLSLFKEVSTEELSVIDTLKKMNLL EMTPLDALNMLHQLQKRI >gi|284795420|gb|ADDQ01000129.1| GENE 65 70082 - 72214 1921 710 aa, chain + ## HITS:1 COG:SPy2121 KEGG:ns NR:ns ## COG: SPy2121 COG0323 # Protein_GI_number: 15675871 # Func_class: L Replication, recombination and repair # Function: DNA mismatch repair enzyme (predicted ATPase) # Organism: Streptococcus pyogenes M1 GAS # 1 710 1 651 660 681 52.0 0 MGKIQELSEQLANQIAAGEVVERPASVVKELVENALDAGSTQIDIFIEEAGLKTIQIIDN GEGIAKEDVLNAFKRHATSKIHTRDDLFRIRSLGFRGEALPSIASVSEMIVETATAEEEE GSYVILKGGKVEENRPAALRKGTKMTVSNLFYNTPARLKYVKTIQTELANIGDIVNRLAL SHPKVAFRLVHDGHKMMSTTGNGDLKQTIAGIYGISTAKKMLKIEGKDLDFTLTGYVSLP EVTRASRNYLSTIINGRYIKNFALNKAIVAGYGSKLMVGRFPIAVLEIEMDPLLVDVNVH PTKQEVRLSKEKDLMALIEQAIQEVLSQEQLIPNAADNLRFKKKLPPEPKAEQMEIPLST EQPAVKQRPGSLSYNPATGRFYAEHATDETPVSSAPETVNQTERAVDPMDDPFAPPVPES TSVAEETSAYETSSAAVDSANHWETSSNEQQIIAKETKVTKVSDSEPSLRSSEAADEVFQ EEMKLHPEFDANSAASQRELKQALNKLEEERPTERFPELEYFGQMHGTYLFAQSKDGLFI IDQHAAQERIKYEYFREKIGEVSDDLQELLVPIVIDYPNSDALKIKEQKETLAEVGIHLE DFGQNSFIVRAHPTWYPAGEEESIVREMIDMLLTTGSVSVKKFREATAIMMSCKRSIKAN HYLNEQQARVLLKDLALCENPFNCPHGRPVLIHFTNSDMERMFKRIQDPH >gi|284795420|gb|ADDQ01000129.1| GENE 66 72239 - 72793 642 184 aa, chain + ## HITS:1 COG:BS_maf KEGG:ns NR:ns ## COG: BS_maf COG0424 # Protein_GI_number: 16079857 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Nucleotide-binding protein implicated in inhibition of septum formation # Organism: Bacillus subtilis # 3 184 5 186 189 167 46.0 1e-41 MQIILASQSPRRQELLKRVVPTFTIAPADIDETVGKDGLPAEYVAQMAAQKAAAIAEQSP EALVIGCDTIVALAGEILGKPTSREDGYRMLRLLSGKTHDVYTSVTLKQGEKERSATVHS TVTFYPLTDTEIHAYLDTAEYADKAGAYGIQGQGALLIEAIAGDYYAIMGLPIAKVARLL KEFN >gi|284795420|gb|ADDQ01000129.1| GENE 67 72926 - 73363 472 145 aa, chain + ## HITS:1 COG:SPy1055 KEGG:ns NR:ns ## COG: SPy1055 COG0229 # Protein_GI_number: 15675047 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Conserved domain frequently associated with peptide methionine sulfoxide reductase # Organism: Streptococcus pyogenes M1 GAS # 5 144 3 142 145 197 65.0 7e-51 MTKPTEEELKQTLTDLQYAVTQENATERPFSGEYDDFYQDGIYVDIVSGEPLFSSLDKYD AGCGWPSFTKPIEKRGVKEKADFSHGMHRVEVRSQEADSHLGHVFTDGPLQEGGLRYCIN AAALRFVPVADLEKEGYGEYLSLFK >gi|284795420|gb|ADDQ01000129.1| GENE 68 73538 - 74509 1100 323 aa, chain + ## HITS:1 COG:lin0238 KEGG:ns NR:ns ## COG: lin0238 COG0462 # Protein_GI_number: 16799315 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Listeria innocua # 1 319 1 318 318 464 75.0 1e-130 MSKHYFDPRLKIFSLNSNRPLAEKIADAVGVELGKCSVTQFSDGEIQVNIEESIRGAHVY VIQSTSSPVNDNLMELLIMIDALKRASAKTINVVMPYYGYARQDRKARAREPITAKLVAN MIEKAGATRMLTLDLHAVQIQGFFDIPVDHLMGAPLIADYFIEHGIQGDDVVVVSPDHGG VTRARKLAEFLKAPIAIIDKRRPKANVAEVMNIIGHVEGKTCVLIDDMIDTAGTISLAAN ALKEAGAKDVYASCTHPVLSGPALQRIEDSAIERLVVTDSIYLSDDRKIAKIDEVSVGEL IGDAIKRIHENKPVSPLFETKNK Prediction of potential genes in microbial genomes Time: Sun May 15 13:29:23 2011 Seq name: gi|284795419|gb|ADDQ01000130.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont723.1, whole genome shotgun sequence Length of sequence - 384 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 69 - 384 338 ## EF3252 hypothetical protein Predicted protein(s) >gi|284795419|gb|ADDQ01000130.1| GENE 1 69 - 384 338 105 aa, chain + ## HITS:1 COG:no KEGG:EF3252 NR:ns ## KEGG: EF3252 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 102 1 96 1265 111 75.0 7e-24 MKRNKWQRLAAIGLCSSLLVNAFSGMTAVAETVTIESSPTAESSAKAETPASSVKEETTK ASTQNSQVTTDTSQEEEKKEIEKQAETELKEDQKEEPQAETPANS Prediction of potential genes in microbial genomes Time: Sun May 15 13:29:26 2011 Seq name: gi|284795418|gb|ADDQ01000131.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont723.2, whole genome shotgun sequence Length of sequence - 2711 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 2709 1924 ## EF3074 hypothetical protein Predicted protein(s) >gi|284795418|gb|ADDQ01000131.1| GENE 1 3 - 2709 1924 902 aa, chain + ## HITS:1 COG:no KEGG:EF3074 NR:ns ## KEGG: EF3074 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 3 902 98 996 1294 614 45.0 1e-174 PQAETPANSSENDLQKGISPRWVPNNQSIYPRMTFGFTDETGKVFADETLTLSGTYYKLA RHIETRQWRAYADRYPIVSSNAGGGQYRVAVNAAVPLPYDFFKNLPVGYDLNIYAIEQLK IDNTLKYVDNIAASTGTIRATSYINQQVSETPQFGNQGNWGLNERDNRFSKNSANIFSLS SVTNTTNNEAILRLLQVASASNGTNPIVILVGFDGTPTYQQTVNYVVTRKQVTEKFVDAN GVAITPPTGFTQNKKTPMTSNAFTFKQAGTLPDTYKVGTKTYKFKGWYKGKTKPATLQTT KAPSYAVTYDGNDDLNVVYEGIVTFDFPESTYQFGFVDVATGNLIDPSLVNMNYTLWQQE EDVQTNLMTNQKGVNSGKFKSFTIPEKKYELRATSTWYGPYNMTFTIPKRYKKMDITKDD GTTDSLYPVPTVTNRLDQPVTITPTKYNKMKQVSGQTFDFNEVRFGGVPFVYSKVLFGSN NTTVGDRIQYYKQTGPVYYYLTNRKVTEAFVDSDGTKITPPTGFTQGKQTVITNDAYTFK QSGTLPDSYTVDGKTYKFKGWYKGETKPATLQTTKAPSYTVTYDDNDDLNVVYEELIPKD TWVYPGFHADFVDEKGQAFNEPLTFSGNYTQTLRKAVDQTYVTTGAMNPLVSIKNTNKAN VYTITTQSRVNVPANFDEVPSDIYDMRAYAINDWNITTELKYVDKIETMNTTLPVSVYPV GFVGTDPVFNNSGPGQLNEIDKSFKKGIDNKFSIKATFGVGSSVNTVPRLLLVARATGNP ENKIVLHGFDGTQDFKQTMNYKVTRKQVTENFVDANGAKITAPTGFTQGNQVPMNSNTFK YTAAQALPTTYTAGGKTYTFQGWYKGKTKPSTLNKTTTPTFNTTFDGNDDMTAMYKEEIP TA Prediction of potential genes in microbial genomes Time: Sun May 15 13:29:41 2011 Seq name: gi|284795417|gb|ADDQ01000132.1| Enterococcus faecalis R712 E_faecalisR712-1.0_Cont870.1, whole genome shotgun sequence Length of sequence - 22470 bp Number of predicted genes - 17, with homology - 16 Number of transcription units - 8, operones - 6 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 72 - 160 53.0 # Ser GGA 0 0 + TRNA 178 - 249 70.2 # Glu TTC 0 0 + TRNA 277 - 349 88.0 # Val TAC 0 0 + 5S_RRNA 281 - 337 92.0 # AF302131 [D:490..741] # 5S ribosomal RNA # Streptococcus agalactiae # Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus. + TRNA 360 - 435 75.5 # Asp GTC 0 0 + TRNA 481 - 553 75.3 # Phe GAA 0 0 + TRNA 559 - 639 72.8 # Tyr GTA 0 0 + TRNA 644 - 717 68.8 # Trp CCA 0 0 + TRNA 754 - 826 65.0 # His GTG 0 0 + TRNA 841 - 912 67.6 # Gln TTG 0 0 + TRNA 938 - 1008 71.3 # Cys GCA 0 0 + TRNA 1022 - 1105 62.3 # Leu CAA 0 0 - Term 1007 - 1077 31.6 1 1 Op 1 . - CDS 1248 - 1361 101 ## gi|256618573|ref|ZP_05475419.1| conserved hypothetical protein 2 1 Op 2 . - CDS 1414 - 2172 447 ## COG0582 Integrase - Prom 2320 - 2379 6.4 + Prom 2287 - 2346 5.1 3 2 Tu 1 . + CDS 2378 - 5161 963 ## gi|256962372|ref|ZP_05566543.1| predicted protein + Term 5220 - 5254 2.2 - Term 5688 - 5717 1.4 4 3 Op 1 23/0.000 - CDS 5734 - 6561 502 ## COG2801 Transposase and inactivated derivatives 5 3 Op 2 . - CDS 6579 - 7139 209 ## COG2963 Transposase and inactivated derivatives - Prom 7223 - 7282 2.9 + Prom 7327 - 7386 1.8 6 4 Tu 1 . + CDS 7536 - 7859 261 ## COG0582 Integrase + Prom 7866 - 7925 7.8 7 5 Op 1 . + CDS 8131 - 8829 591 ## gi|293385314|ref|ZP_06631127.1| toxin-antitoxin system, antitoxin component, Xre family 8 5 Op 2 . + CDS 8891 - 9766 323 ## LM5578_1188 hypothetical protein + Prom 9770 - 9829 1.8 9 6 Op 1 2/1.000 + CDS 9851 - 11953 1047 ## COG3593 Predicted ATP-dependent endonuclease of the OLD family 10 6 Op 2 . + CDS 11932 - 13653 642 ## COG0210 Superfamily I DNA and RNA helicases + Prom 13711 - 13770 4.4 11 7 Op 1 . + CDS 13812 - 13922 118 ## 12 7 Op 2 . + CDS 13949 - 15781 909 ## COG4928 Predicted P-loop ATPase 13 7 Op 3 . + CDS 15781 - 16503 560 ## ABC4088 hypothetical protein 14 7 Op 4 . + CDS 16496 - 17770 443 ## ABC4087 hypothetical protein 15 7 Op 5 . + CDS 17771 - 18514 102 ## COG0084 Mg-dependent DNase + Term 18654 - 18696 3.5 + Prom 18524 - 18583 6.7 16 8 Op 1 . + CDS 18720 - 20795 1502 ## COG0514 Superfamily II DNA helicase 17 8 Op 2 . + CDS 20797 - 22059 938 ## gi|256962359|ref|ZP_05566530.1| predicted protein Predicted protein(s) >gi|284795417|gb|ADDQ01000132.1| GENE 1 1248 - 1361 101 37 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256618573|ref|ZP_05475419.1| ## NR: gi|256618573|ref|ZP_05475419.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] # 1 37 339 375 375 72 94.0 7e-12 MIKERIGHASITTIYDLYGHLYPSKQLDTDNRLDNFY >gi|284795417|gb|ADDQ01000132.1| GENE 2 1414 - 2172 447 252 aa, chain - ## HITS:1 COG:BS_ydcL KEGG:ns NR:ns ## COG: BS_ydcL COG0582 # Protein_GI_number: 16077547 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Bacillus subtilis # 16 238 4 225 368 123 35.0 4e-28 MSKSLFERMIDVTVRKSKDKKTWILDISVGPNIITGKRKRIVRKGFATKKEAEEEEQKIN IYILNDEPDFDHIRIDPLYELMKKEDSRNQRKASYIQTQEYNYNRHIKPYFKNAIIAHLT YEHIDEFRESLLKKELTNNSINKILILLKKILDMALRKGYIKDNPCIHLRKLKTEAKKMK FWTVQEFMKFKVLFHADELNFLLFFSVSFFTGMRSGELLGLTWEDLHFNRSEINVNKTLV KLKVHYSKNTNS >gi|284795417|gb|ADDQ01000132.1| GENE 3 2378 - 5161 963 927 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256962372|ref|ZP_05566543.1| ## NR: gi|256962372|ref|ZP_05566543.1| predicted protein [Enterococcus faecalis Merz96] # 1 927 1 927 927 1565 100.0 0 MRISSQDSKLQIFISSRCSNLDSTKEEINQYNIIRRSIKRILEDTGLFNVYIFEEAMASS SSSQDSYLSKIDRSDIILFLIDSRDGMVTEAVMKEHKRAKEIDKPRIYIIYENGKMTTIQ EELQGPEGVRYKSTASLAEIVDLAVESVICDVLENYSNFHMKRSVELIEEKDESINSLPD SFLKNGLLIDKFGYEKTRSIFEQFADSRINSENEIFTENLNEYDKVYSNFFLYRLNKKKI LDLDWSKLVRKDLFEESIHPYLEKRAKAFCAYHEGEYEEAYEILLNLYEEAGDSEIPKWY IQDVLIDLRHLESKKNEPLNIIRVNKGIQEKISNIKEPLYYPLVDRFRESSFHEIIKERN KDSLRSEFSVVYGNSLKLIVDRYLYKQYIASISHCSIIHVEVVFSDLSEIFLNYYTNTNY YYYGEQALDFLVVSNKQDIFSKVITKHGELIKSCSYDKIYNFFGLIKEKQRDWKVRDYAI MFKNIGKFMDEKRFIEVFNEIIAALNEELTKDELIIFKVDAILEAIHSNVSRISNGKEIL RTFEYILDGKALRFYESFIEILDKMIREDNEDITLEFLDVFLEKISNLVKKELIRLNEKT NNFLLNFSIKIEGSKEKISEFLKENSIHFYENDYQRAHDQALKENIDTWIVESIKKIEKS LDLDKSNPGLLSYGTSLFNELIITVNEAKEVITTEEVDKILMCIEKVMDSGFVQIDLKND ALDFLLCLLVIETDDQRFANLVESGKKILEIDNIKEVKNQSSEYTPLEESYYSYLLNIEM LEIFLYKKNEYELLLNLNSRSFVEKIRSLRFINHILHCYRDRKIEINPELLLVLKFVIFN FIEEDNNELRGKSVEPLFLLSSFDNENSNLYFNKVLLLAEDSDMRVRATVAKILICNEDY KIKFDGIISSLAQDNYYYIRQLVSKSE >gi|284795417|gb|ADDQ01000132.1| GENE 4 5734 - 6561 502 275 aa, chain - ## HITS:1 COG:L0470 KEGG:ns NR:ns ## COG: L0470 COG2801 # Protein_GI_number: 15672806 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 3 272 6 270 272 315 63.0 4e-86 MNFPKATYMYWQKRFNRLNPDQKIEDEMLEIRKEHKDYGCLRMTKEFKHRGFHVNKKKVQ RLLKKLGLEVTSYTRKSRRYNSYRGKIGIVAQNRIRRRFYTSICHQKITTDTTEFKYYEL NDKGIVCQKKLYLDPFMDLYNSEILSYRISEKPNAIAVMDGLNEAIERTNDCPFRRTFHS DQGWAYQMKNYSNKLKQHNIFQSMSRKGNCLDNSPMENFFGLLKQEIFQGKIYHSFGELK REIEQYIYYYNNKRMKKKLNWQSPVQFRIAAQATM >gi|284795417|gb|ADDQ01000132.1| GENE 5 6579 - 7139 209 186 aa, chain - ## HITS:1 COG:L138554 KEGG:ns NR:ns ## COG: L138554 COG2963 # Protein_GI_number: 15674130 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 186 1 181 185 102 36.0 6e-22 MAKYSFEFKVRMVQKYLNGQGGYRFLTKKYGIKNHAQIQTWVNTYKEFGKEGLLRKRQNQ NYSVQFKLNAIELYQTSEMSYREVANVLGMNNPPLITAWVRKFRADGVEGLSKPKGRPTK MPNKKKVSKITSEEAERIKELEKQVRSLQIENAFLKELRKLRKQEAQQRRKNQLHESSTA SEDHSN >gi|284795417|gb|ADDQ01000132.1| GENE 6 7536 - 7859 261 107 aa, chain + ## HITS:1 COG:BS_ydcL KEGG:ns NR:ns ## COG: BS_ydcL COG0582 # Protein_GI_number: 16077547 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Bacillus subtilis # 42 106 303 367 368 84 61.0 5e-17 MGLLIEYMENHSILEVRIFEESPYRVIDADRLRKKYDSILKRDPSLKQIRIHDFRHSHVA LLIHQDEKPYIMKERLGHASIQITYDIYDHLYPSKQRKLADNLDSLY >gi|284795417|gb|ADDQ01000132.1| GENE 7 8131 - 8829 591 232 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293385314|ref|ZP_06631127.1| ## NR: gi|293385314|ref|ZP_06631127.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis R712] # 1 232 1 232 232 423 100.0 1e-117 MNINSQIKYEREKLNLSRAKFVMCLLEKTELKVSEKTVQRWEEGELPNIIELQCLSEFFE VKVSDLLDEEKEPMETTQESLYNFGKKILDYSQIDNIKDLMEIFYITKNDRVESVPRYDI ELQGVNDLLSYKSDDYQAIKFVDHFFHWLERCKETYTTDNSGETIIIHLDNVGSRSHYDP RTILDAEEMTLIKEGITSELYWFTYELSDYLYESNGDSVITGNYFVKKNIFS >gi|284795417|gb|ADDQ01000132.1| GENE 8 8891 - 9766 323 291 aa, chain + ## HITS:1 COG:no KEGG:LM5578_1188 NR:ns ## KEGG: LM5578_1188 # Name: not_defined # Def: hypothetical protein # Organism: L.monocytogenes_08-5578 # Pathway: not_defined # 4 114 17 127 237 65 31.0 2e-09 MGMTQQVLAEKLDENPQYISKWENGKMIPPTHLLPEICSHLNISIDDLLDNRRKHIEKSE RLIDLGKNVLELVNEKSPKEFYKKYQLINKEQVLVFPTAACQNLLDEIDAELKKELSNLD YEKYYTFVMGILDERRINSQTIKHLGESMSEYISQHSNENSSFNDNKISEDSTKSSILYN IVKSFITFWIWVNQMVTYLANDLTENGLKLITEPISDEEFFINKDYFPKEPGIFLYRILM SRGYPSLIDYKVIDADEIEELYEYHLNDQRIDAYYCIAKEKFNYINKVKFY >gi|284795417|gb|ADDQ01000132.1| GENE 9 9851 - 11953 1047 700 aa, chain + ## HITS:1 COG:MA2139 KEGG:ns NR:ns ## COG: MA2139 COG3593 # Protein_GI_number: 20090982 # Func_class: L Replication, recombination and repair # Function: Predicted ATP-dependent endonuclease of the OLD family # Organism: Methanosarcina acetivorans str.C2A # 1 696 12 680 689 429 38.0 1e-120 MFISELEIENFRGFNYKTKILLNNSINVLIGQNNSGKTTIIKAMELLFSDGSKKKLSVGD FYKNITIDDIKALPPKIVISAKLTESEDDEEYSDDLITVSTWLTKIEKPYEARITYEYYL PEKYIDEYKKIMNTVNSNEIEDYWNEIEHSFIPKFKYHILIGDPKYKNTIDAESLKTFDF QFLKAVRDVERDMYRGNNSLLKEVIDFFIDYDVKNNQDLTSDEMLTQIRKNKREFSKKAS GLINDLQKRMKSGKKEMLKYATQTGATFEKLTPTFEGKILDTELYSALKLIVESETGIKI PAAQNGLGYNNLIYISLLLAKMQKNASGTYFGVNAKNYSILAIEEPEAHLHPTMQYKLLK FLNLNSEKEVRQVFVTSHSPNITAAVDLNSLIVVENRGDRIEVSYPGKAFNGSQEDIESK MFVERFLDVTRSDMFFAKKLVFVEGLAEQLLVPEFADMLDKNLVDSHVSVINLNGRYFNH FLKLFDSTKSKFAMKKKIACITDIDPVRKLKDDEDSKAAWKKCHPIFLYQDSNVYEYKAY SNLMLESAQNLSDNIEFFSQPLFISSTLEYQLILDNSTCEELITDSVINKKELKNLIEKY SEVGSIELKDFVALLGSNTTNNEIKKIYKDHHFNKEEFMKHIIATRYLESISKGVVAQEL AIKIMMINQKNNEPGEGEEQIVLNVPEYIKEAIHWIHQQN >gi|284795417|gb|ADDQ01000132.1| GENE 10 11932 - 13653 642 573 aa, chain + ## HITS:1 COG:MA2140 KEGG:ns NR:ns ## COG: MA2140 COG0210 # Protein_GI_number: 20090983 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Methanosarcina acetivorans str.C2A # 7 567 8 582 612 300 35.0 6e-81 MDTSTELITSKSLLPIDSHLKISAGPGAGKTTLLANHVIEVIKNSEKISELRRVACITYT NIAAETLKRRLGLSLDYVEIGTIHNFLYKHIVKPYLWILSEDYTFDFEKIKGHDDIIPSY SILSEWATVTKQFNLINSENLNETSQKIQKITWKLDTNENPILCFPEVWQGKVGKYSIKK NSLMDYKKICWAKGMIHHDDVIFLSLKILEKNCRIVDIIRAKFPYIMIDEFQDTSSIQNN IMKQIADKETIVGVIGDECQSIYEFAGANVEEFINFDINDLRQYKMEENNRSTVEIINLL NHVSRDASLKQFSPKEKRGEKPTLFIGNMHTAYQQAKSVVLDSPLLVLTYRKDNPNQLKY GVEDVDSEELKLSLLFEDDDRGRKLYYVIQSIEYGKEGRFKEAISSMLKAYRKEKEFTDR DSLKNLQRLINNYSAIQSLSLLEFYNKFIFGFFYTQKKITRGKKKDFYSNILYRDIACTV DLNETRSLFRTIHKSKGDEEQNVMLVIDNKDNFNEEKELQFLLDPAINDNEDHRVYFVAI SRAKENLFINIPALSEKNSIKLEKLDIFNIVYV >gi|284795417|gb|ADDQ01000132.1| GENE 11 13812 - 13922 118 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFLTVKGIIETIDKETEEVLKSEVNRDICDPDDLLE >gi|284795417|gb|ADDQ01000132.1| GENE 12 13949 - 15781 909 610 aa, chain + ## HITS:1 COG:DRC0009 KEGG:ns NR:ns ## COG: DRC0009 COG4928 # Protein_GI_number: 10957551 # Func_class: R General function prediction only # Function: Predicted P-loop ATPase # Organism: Deinococcus radiodurans # 1 464 1 498 636 205 28.0 2e-52 MWRDSETEIDYLNFEYLVNLLTDLIDNDKLLPATIGVYGDWGSGKSSLIKMATDKLVTND IVTLNFNGWIFEGYEDAKTVLLETILDSIQGNSTLTTKGKQLLRGLYKSVDKIKMVKKGI TYAADLMTTGGVGIMVDQVASQFKTINGESLTESQLEQTAKSIQDELSMSNLRNDLKEFQ KNFANLLKESKINKLVVFIDELDRCSPDTIIETLEAMRLFVFTGNTVFIIGADERHISYS VERRFAEIKGNQISIGKEYLEKLIQYPVRIPRLNTTDTEYYIFCLLLEDEFDEEVNRSII VRIHELKEADFFNFRLGAAVENFSTEDYFEELSKVFLISQQLSNLLATGLNGNPRQCKRF LNSMKMREIMAASYSVILDRMTLTKIMLLEYFKPAAFEHLTILASKYSDGIIEELSNIEV DPQSTDTNTFKTFLEDDWGENWLKLKPSLSQVDLRGYLFFTRDSLRTPIKVTSLELSKDG LVVYKLLTSKSKSSVAQALSKRDMLPQFDKIEIAKSLSNDTASTEKHGKIDSSIFRSLFE WIVVNEDILSDTLIFLRTIESVKFGLEVAPYIAYYLNSEKAPNPQVKEIIDGWRSLNSEL DRAIQQSEVS >gi|284795417|gb|ADDQ01000132.1| GENE 13 15781 - 16503 560 240 aa, chain + ## HITS:1 COG:no KEGG:ABC4088 NR:ns ## KEGG: ABC4088 # Name: not_defined # Def: hypothetical protein # Organism: B.clausii # Pathway: not_defined # 1 238 1 258 259 121 30.0 2e-26 MGTSSSFTGPNQNPLLPEDFDDNSWQNAKTEFGRFINNTGGKPSRLFGKYVKASGGNSSL ASSSIGGKTGFKNTVNLFNQINNEGLKQTLEAFKISVQGKSLQEIFSELANQVAPTGSSK EEAVARQATLDTMSSFYRLVDEQNVDLEVADSISGNIFDDLLCEYFVNYITGLLLKDLGY GVEKYADDPLMLEMKEQELRDYVDSSIYVMLKNSKLNQRPQKIIDKVFRDAFEIVGGYYE >gi|284795417|gb|ADDQ01000132.1| GENE 14 16496 - 17770 443 424 aa, chain + ## HITS:1 COG:no KEGG:ABC4087 NR:ns ## KEGG: ABC4087 # Name: not_defined # Def: hypothetical protein # Organism: B.clausii # Pathway: not_defined # 46 420 54 428 430 356 49.0 9e-97 MSDNKATISSGKLNFNIDMELSTSYRDTFLEQVFSNSCYVVDEIRLDLLYISNFVYAADR RISRSNALDAWTREIQLTIPVICLSHWNRVRNLLNELLNFLTGDIWEINFTDRKKNERES KLFEFVENQPEYFYSQVCMFSGGLDSFIGSIDILRGQTTSNTLFVSHYGGGSKGTKGYQD LLVKEMINHFSSLSLSNFFSFYSAAMKTPTGQDEPTTRSRSFMFFAHAIALTPDNAKLII PENGFVSLNIPLYFSRNGSSSTRTTHPFYMNLFQKILNILGINVRLENPYQFLTKGQMMN NCLDKEFLSRNIINTMSCSHPEQARWSGCSDPIHCGYCIPCTIRRASINEFCSPDPTLYR YLNYQNKIGKETHNALRIALQKYEKSNHFMVVQRSGSLISDIKKYVSVYEEGMEEIRRLL YEGE >gi|284795417|gb|ADDQ01000132.1| GENE 15 17771 - 18514 102 247 aa, chain + ## HITS:1 COG:AGpA25 KEGG:ns NR:ns ## COG: AGpA25 COG0084 # Protein_GI_number: 16119250 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 4 199 2 198 256 155 40.0 6e-38 MRFIDTHCHLDLSKNRNSFSKEINNNKIYTIAVTNLPKLFQKNKVILPETQYIKHALGYH PELVSQFPDQLGEFKQLIEKTRYIGEIGMDGSVKHKKSFIKQAEIFEEILSLCDKHRDKI LTIHSRRAEMEVISLISKYPYSKKILHWYSGNLDEAEKAVALNCYFSFNHKMLSSKNGKN LLAMIPKERILLETDFPFGYSDETNFSNEYFEKLVEKTAQLKSYTRKDMLDIIEKNQTSI LEREYST >gi|284795417|gb|ADDQ01000132.1| GENE 16 18720 - 20795 1502 691 aa, chain + ## HITS:1 COG:alr3451 KEGG:ns NR:ns ## COG: alr3451 COG0514 # Protein_GI_number: 17230943 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA helicase # Organism: Nostoc sp. PCC 7120 # 6 684 6 689 698 491 43.0 1e-138 MSKSIKTQAIALLKQAYGPDAEFRDGQLEAIVSVVEKEKTLVVQKTGWGKSIVYFIATKI LRQNGAGPTIIVSPLLALMKNQVDSALVLGINAVTINSDNRNEWDDIYDNLDTYDAIIVS PERLSNEEFIEYLADICDIQLFVVDEAHSISDWGHDFRPDYQRIVKLLGNFPDNIAILGT TATANNRVITDIKKQLGDNLVVVRGDLIRERLAIQINPYQNREERLAWLAQSLYSDEKLK DGQGIIYCLTQRDCETVASFLRERMISAKSYHSGLGKDETGNDIAQSRMDDFDKGKIRIL VATIKLGMGYDKSDIRFVIHYQLPQNLISYYQQIGRAGRDGKLAYAILLHGSEDEEIINF FIKNAQADPELLDSIIELTTTGAKLSEMMAELNVQQSKLLKALNYLRVHEHIYKDNSIYR RNVNSTFDSVNESLKQKQLNDVRQVELEQLKQYLKITHCSMKFVAEELDAPDVKERCEIC TNCVGIQLVSTDVHPQNLKAAKEYLRNRHGRILPRKQWATGGNIHEAMRMKEGWTLSDDY YSELGQKVSAGKYEYEHFSEELVEASSEYLKDKVIVSGIDKVLAVPSLRRPDLVPDFAND LAILLSLPYENAIQKTSIAAEQKTLLNKVQQQENIKQSITIDNDKVFGKTILLVDDMVDS KWSFTVIAAELLNAGANAVYPFALVKTGSGN >gi|284795417|gb|ADDQ01000132.1| GENE 17 20797 - 22059 938 420 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256962359|ref|ZP_05566530.1| ## NR: gi|256962359|ref|ZP_05566530.1| predicted protein [Enterococcus faecalis Merz96] # 1 420 5 424 424 712 100.0 0 MINYTAIEKQQIMLKSDLLNNPLTLSERQLLQTLNLNQVIKVDDIDSILMDDSIKEKVAN LLNQGMKLGVELEKLAQRGIDIVFPSNLKITDQLLNRFVVFPDILLTVGKKEFLLDENIK IVTSYADFKRETGNLILLADRNLDTLLRYSDISKHLMDGTLLLVTDTYRKKANIKSMDKE QIFDNKKVFISGSRSQKEISENVQKSLELIQKQNIKVLIGDSEKGVDNEIIDYLRVTPKY EAVEIYTIKQKPRVKIENEWETKFVPTNPSLKPQEKQMVKDRYMADAADWGLVVFNPLTK NRYGALQVSSGTLRNSIQMLLDKKAVKFFYVINDGVKVENLKTISGLKLLIEKYKEERLD SNEREVILSSKGVDPNSDPSFVKYQKINKKFEELLMNEQKIKKERIETKENNNEQTSLFG