Prediction of potential genes in microbial genomes Time: Tue Jul 5 18:09:35 2011 Seq name: gi|307679045|gb|GL456752.1| Enterococcus faecalis TX0312 genomic scaffold Scfld4, whole genome shotgun sequence Length of sequence - 1066 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 10 - 969 221 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase - Prom 1006 - 1065 7.9 Predicted protein(s) >gi|307679045|gb|GL456752.1| GENE 1 10 - 969 221 319 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 4 307 10 315 317 89 28 9e-19 MTYKHLTIDELTMIESYYLQHNKPVEIANRMGRAIQTIYNVVNKFKQGKTALDYWHQYKE NKKKCGRKVIQLPAHEVDYIKEKVTLGWTPDVIIGRKERPVSCGMRTLYRLFSKGIFDID TLPMKGKRKPNGHQEKRGKQQYQRSIHDRPDNYPDFNSEFGPLEGDTIVGIHHKSAVITL VERLSKVIITIKPNGRKALDIETALNQWFSRFPKNFFKSITFDCGKEFSNWKAISNQHDI DIYFADPGTPSQRPLNENSNGILRRNGLPKSMDFREVNQTFISSVSNQRNHIPRKSLNYR TPIEIFLSYVQEAFYSNLI Prediction of potential genes in microbial genomes Time: Tue Jul 5 18:09:49 2011 Seq name: gi|307679044|gb|GL456753.1| Enterococcus faecalis TX0312 genomic scaffold Scfld5, whole genome shotgun sequence Length of sequence - 51124 bp Number of predicted genes - 56, with homology - 54 Number of transcription units - 20, operones - 11 average op.length - 4.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 715 477 ## COG1783 Phage terminase large subunit 2 1 Op 2 . + CDS 733 - 2271 1354 ## NWMN_1016 phage portal protein 3 1 Op 3 . + CDS 2276 - 3214 568 ## COG5585 NAD+--asparagine ADP-ribosyltransferase 4 1 Op 4 . + CDS 3215 - 3484 179 ## gi|282598771|ref|YP_003358795.1| hypothetical protein PHIEF11_0005 5 1 Op 5 . + CDS 3510 - 3842 456 ## lin0103 hypothetical protein + Prom 3878 - 3937 2.7 6 2 Op 1 . + CDS 3965 - 4564 830 ## MPTP_1484 hypothetical protein 7 2 Op 2 . + CDS 4577 - 5509 1071 ## SaurJH9_0892 hypothetical protein 8 2 Op 3 . + CDS 5583 - 5915 344 ## LACR_1139 hypothetical protein 9 2 Op 4 . + CDS 5912 - 6247 281 ## LACR_1140 hypothetical protein 10 2 Op 5 . + CDS 6222 - 6602 264 ## M28_Spy0985 phage protein 11 2 Op 6 . + CDS 6599 - 6988 228 ## LACR_1767 hypothetical protein 12 2 Op 7 . + CDS 7004 - 7534 709 ## MPTP_1482 phage tail protein + Term 7539 - 7588 0.5 13 2 Op 8 . + CDS 7612 - 8070 703 ## gi|315160147|gb|EFU04164.1| prophage L54a, major tail family protein + Term 8083 - 8118 3.3 14 3 Tu 1 . + CDS 8126 - 8476 382 ## SPy_0992 hypothetical protein + Prom 8480 - 8539 2.2 15 4 Op 1 . + CDS 8569 - 8826 185 ## gi|282598753|ref|YP_003358808.1| hypothetical protein PHIEF11_0018 16 4 Op 2 . + CDS 8842 - 12249 3236 ## M28_Spy1236 phage protein 17 4 Op 3 . + CDS 12250 - 13179 752 ## EF1289 tail protein, putative 18 4 Op 4 . + CDS 13196 - 15214 1237 ## EF1290 structural protein, putative 19 4 Op 5 . + CDS 15215 - 15388 286 ## gi|307286583|ref|ZP_07566675.1| conserved domain protein 20 4 Op 6 . + CDS 15400 - 17784 1953 ## COG0584 Glycerophosphoryl diester phosphodiesterase + Term 17833 - 17874 6.3 + Prom 17795 - 17854 3.4 21 5 Op 1 . + CDS 17884 - 18288 476 ## SPs0767 holin protein 22 5 Op 2 . + CDS 18272 - 19105 795 ## NWMN_1039 phage amidase + Term 19108 - 19157 4.0 - Term 19095 - 19144 4.0 23 6 Op 1 . - CDS 19149 - 19697 263 ## gi|315160157|gb|EFU04174.1| hypothetical protein HMPREF9508_00024 24 6 Op 2 . - CDS 19747 - 19947 231 ## gi|315160158|gb|EFU04175.1| conserved hypothetical protein 25 6 Op 3 . - CDS 19956 - 20093 70 ## - Term 20111 - 20139 1.0 26 6 Op 4 . - CDS 20151 - 20252 170 ## - Prom 20273 - 20332 11.7 27 7 Tu 1 . + CDS 20401 - 20886 402 ## EF_C0016 hypothetical protein + Term 20887 - 20933 11.3 - Term 20875 - 20921 11.3 28 8 Tu 1 . - CDS 20924 - 21172 231 ## EF1489 hypothetical protein - Term 21454 - 21492 4.5 29 9 Tu 1 . - CDS 21506 - 21886 549 ## EF2205 hypothetical protein - Prom 21966 - 22025 9.1 - Term 22008 - 22060 15.8 30 10 Tu 1 . - CDS 22144 - 23382 1665 ## COG2309 Leucyl aminopeptidase (aminopeptidase T) - Prom 23417 - 23476 5.1 + Prom 23376 - 23435 5.3 31 11 Op 1 . + CDS 23633 - 24205 667 ## COG1309 Transcriptional regulator + Term 24249 - 24307 4.7 + Prom 24260 - 24319 2.4 32 11 Op 2 . + CDS 24363 - 24836 502 ## COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) + Term 24848 - 24898 13.0 - Term 24836 - 24886 9.2 33 12 Tu 1 . - CDS 24910 - 25353 701 ## COG0716 Flavodoxins - Prom 25381 - 25440 6.0 + Prom 25442 - 25501 5.5 34 13 Op 1 2/0.000 + CDS 25528 - 26292 997 ## COG0024 Methionine aminopeptidase 35 13 Op 2 . + CDS 26308 - 27216 935 ## COG1295 Predicted membrane protein + Prom 27242 - 27301 4.9 36 14 Tu 1 1/0.333 + CDS 27327 - 28463 952 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase + Term 28510 - 28575 4.2 + Prom 28497 - 28556 8.4 37 15 Op 1 . + CDS 28591 - 29373 744 ## COG1216 Predicted glycosyltransferases 38 15 Op 2 . + CDS 29373 - 30200 732 ## EF2196 glycosyl transferase, group 2 family protein 39 15 Op 3 1/0.333 + CDS 30204 - 30917 742 ## COG0463 Glycosyltransferases involved in cell wall biogenesis + Prom 30928 - 30987 5.6 40 16 Op 1 13/0.000 + CDS 31039 - 31905 1140 ## COG1209 dTDP-glucose pyrophosphorylase 41 16 Op 2 11/0.000 + CDS 31918 - 32490 830 ## COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 42 16 Op 3 11/0.000 + CDS 32515 - 33543 1190 ## COG1088 dTDP-D-glucose 4,6-dehydratase + Term 33581 - 33620 1.0 43 16 Op 4 . + CDS 33636 - 34478 1086 ## COG1091 dTDP-4-dehydrorhamnose reductase 44 16 Op 5 . + CDS 34537 - 35262 761 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 45 16 Op 6 . + CDS 35262 - 35612 467 ## EF2189 hypothetical protein - Term 35505 - 35547 -0.2 46 17 Tu 1 . - CDS 35686 - 36027 391 ## EF2184 hypothetical protein + Prom 36145 - 36204 7.0 47 18 Op 1 26/0.000 + CDS 36275 - 37069 750 ## COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component 48 18 Op 2 4/0.000 + CDS 37082 - 38299 1464 ## COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component 49 18 Op 3 11/0.000 + CDS 38289 - 41432 3264 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 50 18 Op 4 . + CDS 41444 - 43585 2342 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 51 18 Op 5 . + CDS 43619 - 45589 1834 ## EF2179 hypothetical protein 52 18 Op 6 . + CDS 45618 - 46919 973 ## EF2178 hypothetical protein + Prom 46944 - 47003 2.7 53 18 Op 7 . + CDS 47025 - 48422 1225 ## COG2148 Sugar transferases involved in lipopolysaccharide synthesis + Term 48425 - 48473 12.7 + Prom 48461 - 48520 4.1 54 19 Op 1 1/0.333 + CDS 48557 - 49315 627 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 55 19 Op 2 . + CDS 49331 - 49534 255 ## COG3475 LPS biosynthesis protein + Term 49541 - 49588 6.2 + Prom 49603 - 49662 5.0 56 20 Tu 1 . + CDS 49778 - 51122 1285 ## EF2174 hypothetical protein Predicted protein(s) >gi|307679044|gb|GL456753.1| GENE 1 2 - 715 477 237 aa, chain + ## HITS:1 COG:SPy0972 KEGG:ns NR:ns ## COG: SPy0972 COG1783 # Protein_GI_number: 15674984 # Func_class: R General function prediction only # Function: Phage terminase large subunit # Organism: Streptococcus pyogenes M1 GAS # 24 234 222 421 429 68 27.0 1e-11 STYKDNPFIAQAFIEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCITDEMVA NFDNIRNGLDFGYATDPLAFVRWHYDKKKNGIYAIDEIYGVKISNRELAKKLHEKGYQND EIFSDSAEPKSNAELVNEHGINHIKGVKKGPDSVEYGEQWLDDLDFICIDPLRTPNIAKE FENIDYQTDRDGNPKPRLEDKDNHTIDATRYGFNEDMWAKKKTKISKNQRNKIKRMF >gi|307679044|gb|GL456753.1| GENE 2 733 - 2271 1354 512 aa, chain + ## HITS:1 COG:no KEGG:NWMN_1016 NR:ns ## KEGG: NWMN_1016 # Name: not_defined # Def: phage portal protein # Organism: S.aureus_Newman # Pathway: not_defined # 8 481 3 477 511 326 42.0 1e-87 MENEEIQKVNEFEHGSDISYSSDVNENFVSFGVESNIHYRYSSAEELLDNTDVLAKMIAH HNEHQVPRLQVLDDYYKAKNTNIIKNRRRKEKEKADHRAAHNFGKVLATFDVGYNTGNPL KVQINNKASQETIDNFNQDNDIDGLNGELWLDMDKYGRAYEIIYRDEDDVDYVDLCNVFE TFVVYDTTVKRRPILAVRYPKTKFTIDADKQYIQPIIYTKDKIITYAETTLATIKLSDPK EDSHDYKEVQITEFSPNRFRMGLYEDILSQIDLYDAGQSDTANYMTDLNDALLVISGDIE AAGLSTEDAIKQKEANILLLESGTDINGNKTSVNASYIYKQYDVNGVEAYKERVRKGIHE ISMIPDLTDTNFSGVQSGEAMKYKMFGFNQMTAVKQRLFKKSLVRRYRLLFNLKSSVSEI DNSDLKGLRIIFTPNLPKAILEELKTLIDSGAELSQETILGLASFVDDVQAELERVKNEN KPLDITDEEVAKTKVNQVKFLAKQSEKETEEE >gi|307679044|gb|GL456753.1| GENE 3 2276 - 3214 568 312 aa, chain + ## HITS:1 COG:SPy0975 KEGG:ns NR:ns ## COG: SPy0975 COG5585 # Protein_GI_number: 15674985 # Func_class: T Signal transduction mechanisms # Function: NAD+--asparagine ADP-ribosyltransferase # Organism: Streptococcus pyogenes M1 GAS # 3 296 8 309 541 135 30.0 1e-31 MSYLKNREESWIKEQMKLDRDREKEIVQQLQNAIDAIQTEIEANWDRFSNGQKITISEAR KMANKMDVKRFERKAKEYVKNKDFSPQANKELKIYNLVMRVSRLELLKSQIGLELITLFD ELDKWGYSQLSESAKDEYLRQAGILGETVKENYSSKVRKIVNASFKSSEFPSFSDNIWQN FVEMKADLEKIITQAITQGKNPRAVAKEMAKFLKPNQLNIRYKLNRLMMTEISGVQTDIQ KQSYLDADIEEYDYIAEPFACEICKKVAKGSPYKVLKMKKRINAPYMHPHCKCSTVPKVS EDYEKSLKERGL >gi|307679044|gb|GL456753.1| GENE 4 3215 - 3484 179 89 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282598771|ref|YP_003358795.1| ## NR: gi|282598771|ref|YP_003358795.1| hypothetical protein PHIEF11_0005 [Enterococcus phage phiEf11] hypothetical protein HMPREF9509_02685 [Enterococcus faecalis TX0411] conserved hypothetical protein [Enterococcus phage phiEf11] hypothetical protein HMPREF9509_02685 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9495_00108 [Enterococcus faecalis TX2141] # 1 89 1 89 89 140 94.0 4e-32 MDNLYKCNQCHKHTPLIRKSENITKDVEHHYAECANCGYKATIMYMNTEIKLLMYEQRKT KFGTKKKGKLTEKLNRLISELRKEVEESL >gi|307679044|gb|GL456753.1| GENE 5 3510 - 3842 456 110 aa, chain + ## HITS:1 COG:no KEGG:lin0103 NR:ns ## KEGG: lin0103 # Name: not_defined # Def: hypothetical protein # Organism: L.innocua # Pathway: not_defined # 24 110 1 87 87 121 75.0 1e-26 MNDDPYDYLDADYEEYLRKEGEMVDSQEFIDKCKEIVSNYANKHLDKSDQKEITKKDVFV VWSCKTLQNNKALLSTTLLDGMYYELTLNGDKQEIYFDAYKKWENNAIKV >gi|307679044|gb|GL456753.1| GENE 6 3965 - 4564 830 199 aa, chain + ## HITS:1 COG:no KEGG:MPTP_1484 NR:ns ## KEGG: MPTP_1484 # Name: not_defined # Def: hypothetical protein # Organism: M.plutonius # Pathway: not_defined # 1 166 1 167 168 77 33.0 3e-13 MKTKKLLLPMHLQFFADNPDTGAGDTDQPAGGQEQTPPGDGGKDKGNEKTFSRGEVAKMI AAEVSKTKEAWEKEQQEKQAEAEKLAKMNAQEKAEHEKKQLEAKIAELERSQALVSMSKE ASKMLSEASLPHDDDLLGLIVSDDAEATKKAVAIVTNYVSMIKKENARQKTPGEGGQFST DKKETESVAALAASTRIVK >gi|307679044|gb|GL456753.1| GENE 7 4577 - 5509 1071 310 aa, chain + ## HITS:1 COG:no KEGG:SaurJH9_0892 NR:ns ## KEGG: SaurJH9_0892 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_JH9 # Pathway: not_defined # 1 308 1 315 324 317 54.0 4e-85 MKKKQLMKMDIQMFAQTWNPDNVTVLEKKDGTIPDKYNTLILKDVMENSKLMQLAKYEEM DGKEKKFEYFAEGPGAYWVGEGEKIKTSKPKWLNVTMTAKKIGVIIPVSREYLTYKMSDF FTQMQPKIAEAFYKKIDAATILDKENPFSQSIEKSVIAASNVIEGDLTYDNILALEDLLG EGEYDPNAFISNRKNRTVLREASKKIGDTTQFIYDRVSNTIDGLPVADLKSMDKGNLYTG DFDYLRYGIPFNINFKISEEAQLSTLTNEDGTPVNLYEQELVALRATMDIGFMVIKDEAF AKIQPKAAGE >gi|307679044|gb|GL456753.1| GENE 8 5583 - 5915 344 110 aa, chain + ## HITS:1 COG:no KEGG:LACR_1139 NR:ns ## KEGG: LACR_1139 # Name: not_defined # Def: hypothetical protein # Organism: L.lactis_SK11 # Pathway: not_defined # 4 107 3 109 110 97 58.0 1e-19 MSKIANDVKKLLNGSLDEKLEIIERRTKDRLQNILNVTELPKSFDSVVYEVTLKRFNRIG QEGMQSYSQEGLSMAFPDSDFSEYQDEIEEYKNKEIEELYKPKRGRFTFS >gi|307679044|gb|GL456753.1| GENE 9 5912 - 6247 281 111 aa, chain + ## HITS:1 COG:no KEGG:LACR_1140 NR:ns ## KEGG: LACR_1140 # Name: not_defined # Def: hypothetical protein # Organism: L.lactis_SK11 # Pathway: not_defined # 1 101 1 101 103 133 60.0 2e-30 MRYLDEITFVKKSSESHYDPNSGEWIEEEPFRKTADVNATDIGTDRSITIFGSIKEGAKV IRTQPLFVIPEFDYIEFEGKTWEVITSRVPALRNSLIIQEVIIDGKKSSKN >gi|307679044|gb|GL456753.1| GENE 10 6222 - 6602 264 126 aa, chain + ## HITS:1 COG:no KEGG:M28_Spy0985 NR:ns ## KEGG: M28_Spy0985 # Name: not_defined # Def: phage protein # Organism: S.pyogenes_MGAS6180 # Pathway: not_defined # 1 126 5 121 121 89 45.0 7e-17 MARSQVRINGLAGISKKLKRNVQLDDVKKVVRNNTAELTANMQAEAEKVLTGHWEGKKFV KPTGATKRSIVMRLSNNGFSGHTGPGTEYAPYLINGTRFMVKRDFFLPPLKQQKVKFRTD LERLMK >gi|307679044|gb|GL456753.1| GENE 11 6599 - 6988 228 129 aa, chain + ## HITS:1 COG:no KEGG:LACR_1767 NR:ns ## KEGG: LACR_1767 # Name: not_defined # Def: hypothetical protein # Organism: L.lactis_SK11 # Pathway: not_defined # 1 128 1 128 129 183 67.0 2e-45 MIKTRDQSIFDEVYKKCQSLGYETYDYKPMNDVGYPFVELEDTQTLHQANKTDIKGSVTL NLSVWGLAKKRKQISDMASAIFAEALSISETEGYYWSLNIQSSGIRVVDDISTNTPLKRA MISLEFKIL >gi|307679044|gb|GL456753.1| GENE 12 7004 - 7534 709 176 aa, chain + ## HITS:1 COG:no KEGG:MPTP_1482 NR:ns ## KEGG: MPTP_1482 # Name: not_defined # Def: phage tail protein # Organism: M.plutonius # Pathway: not_defined # 10 170 5 165 171 180 56.0 2e-44 MANEAKVAAKGIDIILLFRLLKKSKEEAAWKLAFQTEHENTKTKDSDSVATKDGPIRIPG SLEIDFSATSILSVGDPYVDQLEEALDNDDIIEIWEINKAEKGTGDNADKYKATYYQGYV TSFGKSPNAEDTVEVSLEFGINGKGAKGFATLTADQEEVVQYVFKDTTIETADPGK >gi|307679044|gb|GL456753.1| GENE 13 7612 - 8070 703 152 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315160147|gb|EFU04164.1| ## NR: gi|315160147|gb|EFU04164.1| prophage L54a, major tail family protein [Enterococcus faecalis TX0312] # 1 152 1 152 152 215 100.0 7e-55 MVDTFKIYKGQTEVVSGTSPLTITGMGPNTSVPVGEYQVTRVVNGKESERVDIPAFKTLS IAVTGLEFSPKTSTADAGTAGSRQITATVLPENATNKKVTYKITPETEGLAVSETGNITW TEAVPAGVYTTTGTTEDGKKTAQHTLTLNNQA >gi|307679044|gb|GL456753.1| GENE 14 8126 - 8476 382 116 aa, chain + ## HITS:1 COG:no KEGG:SPy_0992 NR:ns ## KEGG: SPy_0992 # Name: not_defined # Def: hypothetical protein # Organism: S.pyogenes # Pathway: not_defined # 1 116 1 116 117 103 44.0 2e-21 MQIEIKGKKYNCIFGVKFIRELDKQHGVVRNDVNLGMGLTTSLPQLVSGNIVVLSDVLYT ATITEKSRPSKDEVDEFVETVDDIEALFDETLKNLEESNAGKLTVRNFKKALMENK >gi|307679044|gb|GL456753.1| GENE 15 8569 - 8826 185 85 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282598753|ref|YP_003358808.1| ## NR: gi|282598753|ref|YP_003358808.1| hypothetical protein PHIEF11_0018 [Enterococcus phage phiEf11] hypothetical protein HMPREF9509_02698 [Enterococcus faecalis TX0411] putative phage protein [Enterococcus phage phiEf11] hypothetical protein HMPREF9509_02698 [Enterococcus faecalis TX0411] conserved hypothetical protein [Enterococcus faecalis TX2141] conserved hypothetical protein [Enterococcus faecalis TX0312] # 1 85 1 85 85 140 100.0 5e-32 MTLYEYEVRLLAFQLKRLDHERDLYLQAWLNNQIKATKGKKSEPYFKEFNKFFNYEEQEK LILGKSLIDEKIDIGAIDLLRKANK >gi|307679044|gb|GL456753.1| GENE 16 8842 - 12249 3236 1135 aa, chain + ## HITS:1 COG:no KEGG:M28_Spy1236 NR:ns ## KEGG: M28_Spy1236 # Name: not_defined # Def: phage protein # Organism: S.pyogenes_MGAS6180 # Pathway: not_defined # 33 1107 23 1064 1093 602 38.0 1e-170 MESYSVEAILTATDRTFSSTMSSAERSMAGVNKQSGELGDGLDKSTTKGNQLGKSILSIG AGVGAVKLVSTAVNMVKDSVEGAINRFDTLNKYPVVMKALGYSTEDVDRSMTKLSDGIDG LPTSLDEIVSNTQQLAISTGSLSKGTDTAIALNDAFLASGASTADATRGMQQYIQMLGKG EVDMQSWRTLQETMPIAMDKVAKSFKEQGVNSVNQLYDALKEGDITFNEFNNRLIELDKG VGGFADLAKKNSKGIKTSWANIKTATVKGVTTVIKSFDELSKAVTGKNIAENLDSLKNVV NITFKAIDAAIQSTIPLMKLFGKAITSIGTALTPLLPTIASFAATFTALKVIQQVTGYIK QSELAIKAYTTAISLYNGISKLATLSTTALGRAWMLNLAADKANSAAIAIKTGLLVAQNT IVGVLTGTISLATVATTVFSTAMKLLMGPIGWVTAAIGGLVAVGVNLWKWLNKETESTKA VKKEQENLMKTTDDLIKKNQEHTQSRKDEAIELNNTKEKFQSMISEMEMLSAKEKLSNSE KKRMVEIVEELNGKMTGLNLVYDDQKNILSEMPGTIQQQVDAYNALDEASQAQENINQML KERNDNEAKLMEINAAREKWNQTLKESGGNTKEARENIEKLGEQEQVLKGVQQELTNEII NTANAHEQSMQRASQAVENGVLNQTVSYNALSGKTKETMDAMRSEYSSLEEKVGSAFDVI QQKQAISVDQMAENLQKNQEAVSQWSTNIAALAQRGVDEGLLEQLRKMGPEGAAQAAELV NSSDEQLQRLNDVYRNTGETSMNAMKEGYQLGKNGLNEEIQALIPTQKETLMTQIKNTDF NSVGLSVTDDFKAGIENGRRSVEEMTKGIVPKVGEDMKGEVQKADFSGIGKSIPQGLEKG VEANKQLPVKTSNQMIDDVVSGARKGLDSHSPSRVFHSIGEDVDSGLSNGIEQNAMNPVR AVESIVDKIISAMDKLPSEMNSIGANAIDGLTNGINANANSALAAARGVADQIVSTMKSA MDIHSPSRVMRDEVGKMIPAGVAVGIDKYSNFVEKSMQRLSKKVAMPALDNLNSNLSFSG GSQSLAFAGDVSSKFTVEVPVIFDSSEVARVIAKPMSKELQNQQDKKNVSLGRRR >gi|307679044|gb|GL456753.1| GENE 17 12250 - 13179 752 309 aa, chain + ## HITS:1 COG:no KEGG:EF1289 NR:ns ## KEGG: EF1289 # Name: not_defined # Def: tail protein, putative # Organism: E.faecalis # Pathway: not_defined # 2 309 1 308 308 504 77.0 1e-141 MLYNFIDVNEQQTKASLPSEAMNFNGSFLEDLVPGYRTLSVVGRELAPTEIQSYQLGIRD GMRHVYARIPERELTVKFKVEANSNEAFRDSFNRLNVALFTEKDVQIWFNDEPEMLWSGS KSDIDAVPEGLNRVVGTFTILLNNPYKYTRSDATSVMWGSTEITFQANYLMGNTGSGAVD LPITIEGGAYWGSTMITFQNRSYLMGDNGQEVKPIEIYPTVEGLKVKPIITIKGTGRGVW IKTRSDTIDIGDFDKSEIVIDTEQFNITKNGKPMIRPMNDFYIYPNEPLYIQAKDSTFNL TIRYPNRFL >gi|307679044|gb|GL456753.1| GENE 18 13196 - 15214 1237 672 aa, chain + ## HITS:1 COG:no KEGG:EF1290 NR:ns ## KEGG: EF1290 # Name: not_defined # Def: structural protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 404 1 404 485 615 68.0 1e-174 MLMAMDLKREYTAVLDNAYNVGYEKIENQIGNLEFSMPLDDPKNEFLQEMLWVELTDNEN EYIGLYRVMPSTVRKDASNNSITYTANEALCTLLDTVLFGYHELVNRKTIDVINYLLNKQ RTKHWVLKKCEFTRYFSYAWENENGLADALFSIPQAFDEDYMWQWNTKVYPFELSLVKPP KEPVARIQEGYNMQGFEIERDPNNLVNRVYPLGAGEGVNQINIKSVNKNIPYVEDAKSIK EHGLVEYVWVDQRFTVPQALKDNAINMLKKWAQPKISWDVTAADLLKLTDEPLSIDKLRQ GTVIMINTDDFGSINLRIKKESKQDVFGAPQDIQLELGNLSDDFTTTMSDLKRKQEINET YSQGATNILNYSYQDNCEKAYPAEIEFFLDDDVFHVNTVELTFKTKRYRGYTKAVKGGGA TVKSTSAGGASTQTSSAGGGSVVSSSAGGGYSSGSTTGGGGGSIQSSSVNGQSSQTSSAG GDHNHLVASNNGSTESSAFYREMDAGSGMRFRLMSTASTDWYTKTSSGNHTHNVTTPAHS HTVNTPNHSHNFNISIPNHTHSISVPSHSHQVRIPAHTHQITLPDHSHPLEWGIYEAPSS ATSVDIVVDGTTIPIHDTSQQRLNIVNYLRKTSGGKISRGNHTIKIIPNKLARIEAQVIC RVFIQSQLGGQF >gi|307679044|gb|GL456753.1| GENE 19 15215 - 15388 286 57 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307286583|ref|ZP_07566675.1| ## NR: gi|307286583|ref|ZP_07566675.1| conserved domain protein [Enterococcus faecalis TX0109] conserved domain protein [Enterococcus faecalis TX0109] conserved domain protein [Enterococcus faecalis TX0312] # 1 57 1 57 57 97 100.0 3e-19 MRLTVKLISKQEEFIVNDESGKTLDDYFTELIDNSSPFIKIGNRILQKATIEYINAE >gi|307679044|gb|GL456753.1| GENE 20 15400 - 17784 1953 794 aa, chain + ## HITS:1 COG:L18600_2 KEGG:ns NR:ns ## COG: L18600_2 COG0584 # Protein_GI_number: 15672199 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Lactococcus lactis # 446 673 6 226 227 136 37.0 2e-31 MAIEQIKETDTLNQGRIKINAILDQSNASTEKVDAYQEELKNGINDAKKIADTAGKEAIR IAEEAGNQANETANQAMANSQTAINTSNQAVSTANNNKQEFDALRNDFDKLVGEAGDSNP EIVQARTDTQGVTRTTLAARLQSDFNDRMTKTEGVSLLSGITNVKVPMDFNGKTAGNTAT NANKYFTDVTAKSLKKPKDTWNEVSQTDYNKLVSRNDSGVSSGSTQNGIIPQQLGEFNAL EAAKRLVPQLFKDLNLDESVKLLKNNFVSFTISERVKASSPNNKTIKVSTYIESTDSWST QIQEPVDEYKDLSIQVTDNNFITSDGIIYIINYTDPSNGVTTSTLDVDYVSIQFEISIDA QSVLEKSGFIKEKRLNEHIEDNSNPHKVTSAQVGLGNVDNYNTATQSSAEKGESNTEFMT PFTTKKYYLNETKTHRQRWKEGLNWIAHRGNNTEYPENSIPAFKTVRRHWGIETDIQVTS DGQWVVMHDETVDRTTNGTGKVSSMTLSQFRNLRIDAGANVSKLSDEERIPPTLDDYLSI CKQINKVPIIEIKNNEYSTANYALLKDTLNLYGFDEFNCVIGSFSYAVLNVIRSMYPNME LHYFVNEINTNVINELKNLSIPAVCSCIFNNASVNSTNVKNLHSLGMKIGTWTVPENKFA DMTKLGIDYITTNSLSGNQKYAKLSYQNGFVDNQGITDASYVEELVGGGIHINFNVEKGG NTQNTVIANLPDWAIPLKSQYSQCGIRTSSGVALGTFDIRGRTAPTGVVAGTLSVGLNWS GRSSWAAGSTVYAV >gi|307679044|gb|GL456753.1| GENE 21 17884 - 18288 476 134 aa, chain + ## HITS:1 COG:no KEGG:SPs0767 NR:ns ## KEGG: SPs0767 # Name: not_defined # Def: holin protein # Organism: S.pyogenes_SSI1 # Pathway: not_defined # 2 124 1 123 151 119 52.0 3e-26 MVIIDNQALILEFKNMISNGFIQVFVWIVLGDILTGLCKGIFIKEGNSTKGLLGLVKHLL VVCLISVAYPYLKIMGLESIATGFVLFYIAVYGISIIENLGQLGVPFPSWVKEHLSKLKD ENDKGGEPKDGASD >gi|307679044|gb|GL456753.1| GENE 22 18272 - 19105 795 277 aa, chain + ## HITS:1 COG:no KEGG:NWMN_1039 NR:ns ## KEGG: NWMN_1039 # Name: not_defined # Def: phage amidase # Organism: S.aureus_Newman # Pathway: not_defined # 5 181 183 378 481 149 43.0 2e-34 MVQVINQSVCSGIAGRRPNATPKGVVIHNDAGSIYATAAQYVNALAVMSPTQLANGFAHY YIDRNTIARVEDTFNAAWHTANPEGNLNYVGYEVCQSMGASDADFLANEQMTFKQVAEDM KFWGMYPNRDTVRLHKEFVPTACPHRSWELHGKETNAVKDYFISQIKKYMSNPNEGNGDS NNNNQNNIKGGETTMQCLYERPINSKTGKLEWNGDAWTVMFCNGVNTRRVSHPDEMKVIE DLYKKNNGKDIPFYGQDKWNKNAPWYNRLEAMFPVVK >gi|307679044|gb|GL456753.1| GENE 23 19149 - 19697 263 182 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315160157|gb|EFU04174.1| ## NR: gi|315160157|gb|EFU04174.1| hypothetical protein HMPREF9508_00024 [Enterococcus faecalis TX0312] # 1 182 1 182 182 311 100.0 1e-83 MLTKIKVTTNKFTSWYKKHNNSISKVVKVAISFTIIVLGFCLNKTYYEDISVEFYPFVSK DEPYSNNIVDEVNLDKEPNKVVLVSSLEIPMTIEILKFESMEKDNSPKYKSTGIKKSLEP GDVFKIAYLESENIPNYELKASTGYGDGNISLKYNGRYGNINKTKIKSERKLIPYFKDKI LN >gi|307679044|gb|GL456753.1| GENE 24 19747 - 19947 231 66 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315160158|gb|EFU04175.1| ## NR: gi|315160158|gb|EFU04175.1| conserved hypothetical protein [Enterococcus faecalis TX0312] # 1 66 1 66 66 102 100.0 1e-20 MTYTEKIEKLIDMDLTSYRIAKETGISTQYIDKIRSGKTAIENIGLGKAELLVKYFDKLI KDKIEF >gi|307679044|gb|GL456753.1| GENE 25 19956 - 20093 70 45 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKNKAYGLTLLAVVLVGLGLTVFNVINWITYLVILLIVGILSKRK >gi|307679044|gb|GL456753.1| GENE 26 20151 - 20252 170 33 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLDDIGKAVAIVLGVLQSAKIVKELLKDDNDDK >gi|307679044|gb|GL456753.1| GENE 27 20401 - 20886 402 161 aa, chain + ## HITS:1 COG:no KEGG:EF_C0016 NR:ns ## KEGG: EF_C0016 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 2 157 1 161 168 209 72.0 4e-53 MVRRTKKEFKPYNDYVDRPFELKWPTAFPLGELTEAIKSTDEYHARNIERLPQQSQNQIE YFLDRSIKHNKVLEIQLNSLDEYDRVKPHVFGVFRGMAEFDVVLIGEQEIDFYDIRHIQI HNFTKWSEEHVTEENPFDEEQERCETIDEFVDEYFDDEWIE >gi|307679044|gb|GL456753.1| GENE 28 20924 - 21172 231 82 aa, chain - ## HITS:1 COG:no KEGG:EF1489 NR:ns ## KEGG: EF1489 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 82 1 82 82 108 80.0 8e-23 MKTNYVGVVEKIRMLSMYPKMLVRFSLVTHNETVNCIVSKQELANLLLMTVEGTELAVFG HQNKRKQLVIDKILVRKSLILA >gi|307679044|gb|GL456753.1| GENE 29 21506 - 21886 549 126 aa, chain - ## HITS:1 COG:no KEGG:EF2205 NR:ns ## KEGG: EF2205 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 126 1 126 126 231 99.0 5e-60 MGLFDGLLGNATQNNNETAEKELRDVLIPNEKVDMAFTLVRDLIVFTDKRLILVDKQGIT GKKVDYKSIPYKSISRFSVETSGHFDLDAELKIWISSAELPSVSLQFRKDKDIVAIQQAL AAAVLS >gi|307679044|gb|GL456753.1| GENE 30 22144 - 23382 1665 412 aa, chain - ## HITS:1 COG:SP0278 KEGG:ns NR:ns ## COG: SP0278 COG2309 # Protein_GI_number: 15900212 # Func_class: E Amino acid transport and metabolism # Function: Leucyl aminopeptidase (aminopeptidase T) # Organism: Streptococcus pneumoniae TIGR4 # 1 412 1 412 413 514 62.0 1e-145 MTLENFNENLKKYARLIAETGVNVQDNHTVVLQISVDQAPLARLITEEAYRLGAAEVIVQ WSDETIQREFLAHAATDRIENVPQYKIDQTDDWIAKGASRISVVSSNPDALAGVDAQRVA AFQAANGKALVNLRKATQANKVSWTVVAAASEGWAAKVFPELATSEEQVDALWNEIFKTT RIYEENPVIAWNIHDKKLQEKAAELNEQQFTALHYTAPGTDLTIGLPKNHLWEGAGSYNA RGEEFMANMPTEEVFTAPDSRRVDGYVSSTKPLSYAGTIISGMKFTFKDGKVVDFSAEQG EEALKNLLAIDEGAKHLGEVALVPDPSPISQSGLIFYNTLFDENASNHLAFGSAYAFNLQ GGTEMSEEELAEAGLNRSQTHVDFMVGSDKMNIDGIKEDGTIVPVFRNGDWA >gi|307679044|gb|GL456753.1| GENE 31 23633 - 24205 667 190 aa, chain + ## HITS:1 COG:FN1004 KEGG:ns NR:ns ## COG: FN1004 COG1309 # Protein_GI_number: 19704339 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Fusobacterium nucleatum # 1 175 1 174 188 69 27.0 3e-12 MARKKTITKEQILTAAYEVVATEGFSKFTARNIANKMKCSTQPIYLEFKNMDDLRDALFQ KIHKYLAKEVFPVKHTGNTIVDLALNYIHFATSESKLYRALYLEEYGGGKKMQEFSYHYF TEAVKADPEYANLNDVQIDSLHMGTWVVATGVAALMTSGIIHPSEEQIIHLMKDSIEAIL ERDEPIDIDL >gi|307679044|gb|GL456753.1| GENE 32 24363 - 24836 502 157 aa, chain + ## HITS:1 COG:CAC0262 KEGG:ns NR:ns ## COG: CAC0262 COG3476 # Protein_GI_number: 15893554 # Func_class: T Signal transduction mechanisms # Function: Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) # Organism: Clostridium acetobutylicum # 3 157 10 165 170 82 35.0 4e-16 MNRVKDKRLWLSIVGITGLGLLSGLFSVNAREYYQALRLPSFAPPGWLFGPVWLVLYIFM GITFYFILVHPNKQQKKRMITLFILQFIANFFWTFFFFSLQNNLLSVIDISLLWLLLIVQ QWDYLRYKLITRGWLMIPYILWVTFAAALNYSILFLN >gi|307679044|gb|GL456753.1| GENE 33 24910 - 25353 701 147 aa, chain - ## HITS:1 COG:SPy0721 KEGG:ns NR:ns ## COG: SPy0721 COG0716 # Protein_GI_number: 15674777 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Streptococcus pyogenes M1 GAS # 1 145 1 145 149 173 73.0 1e-43 MTLAKIVYASMTGNTEEIADIVAEAFEDLELEVEIDECTQVDAADFEEADICVVATYTYG DGDLPDEIVDFYEDLQEIDLSGKIFGVCGSGDTFYDDFCKSVDDFEAVFTQIGAKKGADS VKVDLAAEEDDIQRLEEFAKKLATAAE >gi|307679044|gb|GL456753.1| GENE 34 25528 - 26292 997 254 aa, chain + ## HITS:1 COG:lin1821 KEGG:ns NR:ns ## COG: lin1821 COG0024 # Protein_GI_number: 16800888 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Listeria innocua # 1 250 1 250 252 360 67.0 1e-99 MITLKSPREIEMMDESGELLADVHRHLRTFIKPGITSWDIEVFVRDFIESHGGVAAQIGY EGYKYATCCSINDEICHGFPRKKVLKDGDLIKVDMCVDLKGAISDSCWSYVVGESTPEID RLMEVTKKALYLGIEQAQVGNRIGDIGHAIQTYVEGEGYGVVRDFVGHGIGPTIHESPMI PHYGEAGKGLRLKEGMVITIEPMVNTGTWRMKMDPNGWTAYTEDGGLSCQYEHSLAITKE GPRILTSQGEELTY >gi|307679044|gb|GL456753.1| GENE 35 26308 - 27216 935 302 aa, chain + ## HITS:1 COG:lin1818 KEGG:ns NR:ns ## COG: lin1818 COG1295 # Protein_GI_number: 16800885 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 9 275 10 276 289 176 35.0 6e-44 MKFLDNIKKNQSLMRFIETTQSHMVTAEIGNSSVVVAYYLLLSLFPLLIAVGNVLPYLRI DPNSVLPYIAEAIPKDVYKNLEPAIRSLLTQRSGGLLSVSALAAFWSASQSINALQNAMN KAFGVEQRKNFILVRVVSFLVILLFMVAIVGVVVILGLGQYIIELLQPIFHYSTSVIDTF QALKWPLTTVVLLVIMCLIYAVVPNRKLSLRSILPGAIFSTVGWMLLSQIFGLYVKYFSS RIASYQIIGSFIILMLWLNFAATIIILGAIVNAVVDEYLSGDKEKKQPSFEQRLFRWFKK KK >gi|307679044|gb|GL456753.1| GENE 36 27327 - 28463 952 378 aa, chain + ## HITS:1 COG:L35751 KEGG:ns NR:ns ## COG: L35751 COG0472 # Protein_GI_number: 15673776 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Lactococcus lactis # 4 365 10 397 443 379 53.0 1e-105 MSLFIYEVLIRLFMTFILSLLLTPLVKLLAFRIGAYDAPGERRINTKNMPTAGGLAIYIA FASSCLLIFRSIIPQDYIWPIILAGGMVVLTGLIDDIKEITPMKKTIGILLAALVIYFVA GIRIDFVTLPVVGMIDLRWFSLPLTLLWILAITNAVNLIDGLDGLASGVSIIGLTTIGIT GYFFLHAKTVYIPIVIFILVASIAGFFPYNFYPAKIFLGDTGALFLGFMIAVMSLQGLKN ATFITVITPMVILGVPITDTVYAIIRRLLNKKPISSADKMHLHHRLLSLGFTHKGAVMTI YALALVFSFVSLLFSYSSTVASILLIVFCLIGLELFIELIGLVGEGHQPLMYLLRILGNR EYRQEQMKKRLGKHSKRK >gi|307679044|gb|GL456753.1| GENE 37 28591 - 29373 744 260 aa, chain + ## HITS:1 COG:RSc0688 KEGG:ns NR:ns ## COG: RSc0688 COG1216 # Protein_GI_number: 17545407 # Func_class: R General function prediction only # Function: Predicted glycosyltransferases # Organism: Ralstonia solanacearum # 5 257 4 251 275 107 29.0 2e-23 MQEMVTISIVTYNSRYIFNVLNQLKAELGTDSIYDIHIYDNHSETAYLEKLTTYEPFITI HRAEENQGFGHGHNQVLFNASTKYAIIFNPDVLVTKDVLDRLLDRIKIDKNIAVVSPKVL NEDGTTQYLVRQKLDVFDYMLRFIPFQFVKKIFDKRLSIYECRDLSDTETTDIKMGSGCF MLIDREKFVEIGGFDERFFMYFEDNDLCLRFGKAGYRILYTPFETVVHMYEKGAHKSRKL FKIFMQSMGKFFNKWGWRFF >gi|307679044|gb|GL456753.1| GENE 38 29373 - 30200 732 275 aa, chain + ## HITS:1 COG:no KEGG:EF2196 NR:ns ## KEGG: EF2196 # Name: not_defined # Def: glycosyl transferase, group 2 family protein # Organism: E.faecalis # Pathway: not_defined # 1 275 1 275 275 526 97.0 1e-148 MSQRLAVVIVLYQMKMADAPNYLLLKEVVNHPELHLFIYDNSPLPQEDALFLQQNVTYRH NPDNPGLATAYNEAIAFSQANQCELLLLLDQDTEVPASYFDTLIIMPLDPTVAVYVPIVD ANGQQISPVYSDQYVGLKGAKPTAGIANQPLMAINSGTVITAETLRWLEEFSEEFPLDYL DHWFFYQLNQANKKIEVLPIHLKQELSVLDYRTMSPQRYRSIIEAETLFYRRYDQEKFSH HRRHLFLRSSKQFLTVKNRQIWRQTLAEFLKLMKG >gi|307679044|gb|GL456753.1| GENE 39 30204 - 30917 742 237 aa, chain + ## HITS:1 COG:DRA0037 KEGG:ns NR:ns ## COG: DRA0037 COG0463 # Protein_GI_number: 15807707 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Deinococcus radiodurans # 4 206 10 222 328 117 31.0 2e-26 MISVCIATYNGEKYLAEQLDSILLQVSEEDELIISDDGSTDHTLEILRTYAANYPQIQLL QGPGQGVIANFAFALTHTKGEVIFLADQDDVWLPNKVTTVTEYFETHPDIQVVISDLKIV DADLQVTNPSYFKFRKIKPGFWRNAIKSGYIGAGMAFRQEMKNVILPIPPEVPMHDMWIG LLAARKKQTGFIKEPLVLYRRHGANVSPIITKTSFQQKLNWRVNLLKALHQRLKEQR >gi|307679044|gb|GL456753.1| GENE 40 31039 - 31905 1140 288 aa, chain + ## HITS:1 COG:L197041 KEGG:ns NR:ns ## COG: L197041 COG1209 # Protein_GI_number: 15672176 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-glucose pyrophosphorylase # Organism: Lactococcus lactis # 1 285 1 285 289 461 79.0 1e-130 MKGIILAGGSGTRLYPLTKATSKQLMPIYDKPMIYYPMSTLMLAGINEILIISTPEDTPR FESLFGDGHDLGIHIEYAVQESPDGLAQAFIIGEEFIGDDSVCLVLGDNIYYGGGLSKML QRAASKESGATVFGYHVNDPERFGVVEFDEEMRALSIEEKPAQPKSNYAVTGLYFYDNEV VEIAKGIKPSERGELEITDVNKVYLEKNKLSVEVMGRGFAWLDTGTHESLLEASTFIETI EKRQNLKVACLEEIAYRMGYITKEQLVELAQPLKKNGYGQYLLRLAAE >gi|307679044|gb|GL456753.1| GENE 41 31918 - 32490 830 190 aa, chain + ## HITS:1 COG:CAC2331 KEGG:ns NR:ns ## COG: CAC2331 COG1898 # Protein_GI_number: 15895598 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes # Organism: Clostridium acetobutylicum # 6 178 9 180 185 186 55.0 3e-47 MKVIDTKLQDVKIIEMDVFGDHRGFFTESYSKAKFAEHGLDFDFVQDNHSLSTEAGVLRG LHFQKGEAAQTKLIRVVTGAVLDVIVDIRKGSPTYGQWEGYILSEHNHRQLLVPKGFAHG FVTLTPNVNFMYKCDNYYNAAADGGIAFNDPALAIDWPIAPEKAITSEKDQKHPTLKEFE AENPFIYSEI >gi|307679044|gb|GL456753.1| GENE 42 32515 - 33543 1190 342 aa, chain + ## HITS:1 COG:SPy0936 KEGG:ns NR:ns ## COG: SPy0936 COG1088 # Protein_GI_number: 15674955 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-D-glucose 4,6-dehydratase # Organism: Streptococcus pyogenes M1 GAS # 2 342 3 343 346 581 81.0 1e-166 MKKIIVTGGAGFIGSNFVHYVVKNHPEVHVTVLDKLTYAGNEKNLEGLPSDRVELVVGDI ADAELVNRLVAETDAVVHYAAESHNDNSLNDPFPFVQTNLIGTYTLIEACRKNNVRYHHV STDEVYGDLPLREDLPGHGEGEGEKFTAETPYNPSSPYSSTKAGSDLLVKAWVRSFNLQA TISNCSNNYGPYQHIEKFIPRQITNVLSGITPKLYGAGKNVRDWIHTNDHSSAVWAILTK GQIGETYLIGADGEEDNKTVMELILELMGQPVDAYEHVNDRVGHDLRYAIDSTRLREELG WEPEFTNFREGLAETIKWYTENEDWWRADKEAVEAKYAQNGQ >gi|307679044|gb|GL456753.1| GENE 43 33636 - 34478 1086 280 aa, chain + ## HITS:1 COG:L320 KEGG:ns NR:ns ## COG: L320 COG1091 # Protein_GI_number: 15672181 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-4-dehydrorhamnose reductase # Organism: Lactococcus lactis # 1 276 1 281 299 353 64.0 2e-97 MILITGGNGQLGTELRHLLDEQGIEYVSTDSTELDITDADSTLAKVKEIQPSVIYHCAAY TAVDKAEDEGKELDEKVNVDGTRHVAEAAKAVGATLVYVSTDYIFDGTKKEGVYAIDDQP NPLNEYGRTKLLGEQAVQEILDDYYIIRTSWVFGQYGHNFVFTMQKLAETRDQLTVVDDQ FGRPTWTRTLAEFMAFVIAEKAPFGVYHLSNENSCSWYQFAKEILKDTEVEVLPVDSTQF PQKAQRPQYSVMDLSKTEALGFKIPTWQEALAQMLENVQQ >gi|307679044|gb|GL456753.1| GENE 44 34537 - 35262 761 241 aa, chain + ## HITS:1 COG:L11285 KEGG:ns NR:ns ## COG: L11285 COG0463 # Protein_GI_number: 15672191 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Lactococcus lactis # 2 237 5 237 241 250 54.0 2e-66 MKVLLIIPAYNEEENILRTIASIETFKQEVTHFQHELDYVVINDGSTDGTKQILEVNQIN AIHLVLNLGIGGAVQTGYKYALENEYDVAVQFDGDGQHDINSLPILLEPLAEGKCDFSIG SRFIPGNEASFQSTKMRRFGIRLLSFCIRMASGKTIYDVTSGYRAGNRKVIAFFAKRYPT NYPEPESIVHLIKKRFVIVERPVNMMERLGGVSSIRALASVKYMLEVGSAILIAAFMKEG D >gi|307679044|gb|GL456753.1| GENE 45 35262 - 35612 467 116 aa, chain + ## HITS:1 COG:no KEGG:EF2189 NR:ns ## KEGG: EF2189 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 116 1 116 121 166 95.0 4e-40 MLPTVLWLALFLFAIGFFLYIIRGINKNIFLLKNALIWLLISIVLIIFAIFPHVAEWLAM AFGFETTSNFLLSAAVIVLLIMEIKNSVLISKHENRIKTLLQELSIMKSEENKKDR >gi|307679044|gb|GL456753.1| GENE 46 35686 - 36027 391 113 aa, chain - ## HITS:1 COG:no KEGG:EF2184 NR:ns ## KEGG: EF2184 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 113 1 113 113 112 100.0 4e-24 MVLFIIYVFLSSAGLVLFKLGSSSLNIQLQQTIFSMNISLISLLGLFCYLISFILWMLII SRSDVSYIVPLGVACTNIAILIASNLILKETITTNALIGAVVIIVGIVIMNLK >gi|307679044|gb|GL456753.1| GENE 47 36275 - 37069 750 264 aa, chain + ## HITS:1 COG:BS_tagG KEGG:ns NR:ns ## COG: BS_tagG COG1682 # Protein_GI_number: 16080624 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate export systems, permease component # Organism: Bacillus subtilis # 18 264 17 275 275 143 33.0 3e-34 MFKETFSIFKNIFQNKKLLLQFSFNDFKAKYAGSALGIVWAFLTPLVTVLTYWFVFSVGL RSRAGDNMPFIVYLVTGMVPWFFFSDSLLSATNVFREYSYLVKKVVFNVQILPTSKILSN LYTHLFFILIGFVITTANGYYPSLYSLQLIYYLACLLVFLTAITWITASTQPFLPDIMQF INIIMQTVMWTLPILWQPTGMIATILKINPLYYIVQGYRESYLGGAWFWEHWQYSLYFWG VTIVLLLIGSTVFRRLKPHFSDVL >gi|307679044|gb|GL456753.1| GENE 48 37082 - 38299 1464 405 aa, chain + ## HITS:1 COG:PA1386 KEGG:ns NR:ns ## COG: PA1386 COG1134 # Protein_GI_number: 15596583 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate transport system, ATPase component # Organism: Pseudomonas aeruginosa # 11 238 13 240 422 242 49.0 1e-63 MSEYAIDIQHITKTYNMYKKPSDRFKEALSPTKKSYHDLFYALDDVTMQIKKGEMIGFVG ENGSGKSTMLKIITGVLTPTSGSMVINGKISALLELGSGFNPEYSGYENIFLNGMVLGFS REEMEERVQDVIDFADIGDHLYQPVKTYSSGMFVRLAFAVAINVDPDILIVDEALAVGDL EFQLKCMEKFTEIKNSGKTILFVSHDVNSIRRFCDRTFWLQHGKVVEYGDTMDVTTNYEN FLKKKSIKTVDREATMKDETPTPDIIEVDHAELLNADYEPLEMVTQDEKVIVKIEYTVKN DQIKKPVCGVAIRTVDNHYVCGLNTLLDGVQIPWKKGRNVFYLEYEKMSLLTGEYYFDIA FFEEHATVPLVYKTKYVTMFITGRYAGEGIVILDHKWKDTTKDEV >gi|307679044|gb|GL456753.1| GENE 49 38289 - 41432 3264 1047 aa, chain + ## HITS:1 COG:alr4487_2 KEGG:ns NR:ns ## COG: alr4487_2 COG0463 # Protein_GI_number: 17231979 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Nostoc sp. PCC 7120 # 554 791 1 239 519 183 38.0 2e-45 MKYDFEMETDESTSVGKIVAQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELY DHVSQFSTDAFYGNIDENDWVEYFAGKTFDYIVFADVLEHLMNPQSALAKVKPFLKPGGQ ILITFPNLAHNSVLIDLFNNRLTWNETGLLDATHKSFYLQEGFEKVFVEVGLYIAKEDFT FNQVGYNEIPTTYEALPVEVQAAFKARPFGEVYQYFFALTAEPVEQPERVTPVNSYNEKN VHILINCGEEKETELDQPVDLQKPETKQFQLKIPEDVQLIKLFPSLTGAIIKLSMTIDGE TVPVAATNAFLVQENIYYFLDTQVPVIEVTDAQMAGKDLTVDIDYFFEGNYSERENTFIH ALLDERNQFLEEMNKQTETAPMPTGKYKRITLTKFDKMINLTIDDIARDVENNVSVIRGW AYDKQTNYPLRFSIAEASESVTYTVETEYRRDVIDMFELEGDQDYGFVITIKDPEDLPAY TLNIDTKSGQKVQYVVERPNMVQPGTKFDRAWRSIQTRGLMGSVKWYFKRQEKAEAPVDV EAVLAEIKTFQFQPKISVAVPVYNVEEKWLAACVSSLQNQYYENWELCLADDASPSEHIK PMLEKYKELDQRIKVIYREENGHISEATNSALSIATGDFVGFMDNDDELAPQALYEVVKA LNTDPTIDFLYTDEDKITENGRRFNAFYKSDWNPELILNHNYITHFVVVKRDLLEKVGGL NSAYNGAQDYDFVLRATEQATKIKHIPGMMYHWRAIESSTALNPESKGYAYVAGQKAVQA ATERRGLKAQVEIAEFYGSYKINYLYDHVPMVSLIITNDTENMSSYLRQLLEKTAYTNYE ILLPARFENQINIQNDRLRYVSTETRHGMIQAAKGEYVALLNAGLVPTKNDWLKELMNIG QQETSGLVTGRVVDARYRVETVGVSVDTDKGRLLYPEKGTPGKSLGYYYRIALPRNIQAA TEDCLLFNKQLYLNLEGINESLGKEWMGVDLSLQFASAGKRNVYVSYAILKADEKMQNHD KKGSYKELAEKWTAEALVDPYRNPKHL >gi|307679044|gb|GL456753.1| GENE 50 41444 - 43585 2342 713 aa, chain + ## HITS:1 COG:alr4487_2 KEGG:ns NR:ns ## COG: alr4487_2 COG0463 # Protein_GI_number: 17231979 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Nostoc sp. PCC 7120 # 180 573 1 392 519 212 33.0 3e-54 MNEDIKVIFDSIYRDKTTNNLTITGWALDTITKESPTFTINNENQVSAYNIQRVLREDVN QIYQTEPAIEAGFVVTLEGIKQKKVLPFHFQSSAHVVTVDFPLNKKYPVIPGTEDKVTRL WIKAKKGFKYMAKNGISHTIQRAKIEKLRNQASYPNWLARNEVLDIEAMTQEIATFHYQP KISIAMPVYNVEEKWLRLCIDSILNQVYTNWELCMADDASTDPNVKKILTEYQQLDERIR VVFREQNGHISEATNSALAIATGEFVALLDNDDELAINAFYEVVKVLNENPELDLIYSDE DKIDMDGNRSDPAFKPDWSPDLLLGTNYISHLGVYRRSILEEIGGFRKGYEGSQDYDLVL RFTEKTTKERITHIPKVLYYWRMLPTSTAVDQGSKGYAFEAGLRAVQDALVRRGINGHAT HGAANGLYDVYYDIESEKLVSIIIPTKNGYKDVQRCVSSIIEKTTYQNYEIIMADNGSTD PKMHELYAEFEQQLPGRFFVESIDIPFNFSTINNRAAKKAHGEYLLFLNNDTEVITENWL TLMVSFAQQERIGCVGAKLLYPNNTVQHAGVILGLGGVAGHGHYGYPHGDLGYFGRLAIN VNYSAVTAACLLMKKADFDAVGGFEEAFTVAFNDVDLCLKVQALGRDNVWLHEAELYHFE SQTRGYDDKGKKKKRFEQEKVMMEEKWGPLIENDPFYNPNLTRDIPNFSLRID >gi|307679044|gb|GL456753.1| GENE 51 43619 - 45589 1834 656 aa, chain + ## HITS:1 COG:no KEGG:EF2179 NR:ns ## KEGG: EF2179 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 656 1 656 656 1251 100.0 0 MEQQLTTRKEKQPLRNQAEQSARLVDHLLRWRYLLAAVIFILLVAFKVHGSSLNMWDAYV SEYADGQKSSLIAGEPRGVRSDEWLVQTPFSLSQTQTGLKTHNDVITLNGQDMVVGYNSP AWNLATLAKPFTWGYVLLGKEYGLSWYWNLKLIGLILFSFEIGLIVTRRNKYLALLASVW IPFSSALQWWFVSPVGDLVFFGLGFLVGIYNYFYYHSSVRRRVICAITAVIMASGFVLVI YPALQVPLGYLILLFLILFFLEFRKKIKLDKWDGVLIGGALLMTAIIVGGSLYGSLDSLK AVMDTAYPGKRVSLGGDMPKRDILLFLTNWKMPFQDVPYSNNSEISSFYQLFFVILPLSP FIFYKKIKENIYGFVLFVYCLFNLVWMSVQFPTIFAKLTLWSYVPEQRAMLSFGFAAVLL SLWFIDYLWNRQAKIPMMAWLGALGLNVVLYFFVLYTGNLRLYVTRMDIIGVLVVATVLI VALFKRWRTLFVLVLLGIIMVSGAFVNPISRGVSAVYGKKLAVEVEEINKKDPNQLWVGE RLMYGYLPMLGVHTFNGVAFTPDLEAWKPLDPKGKDTFIYNRYAHINVEVGNQTPVLELM QKDAIIARLSPEKLKEYGIKYAVVYKPLEPLDTPTIHFEKLYGPDQNGAYIYRIND >gi|307679044|gb|GL456753.1| GENE 52 45618 - 46919 973 433 aa, chain + ## HITS:1 COG:no KEGG:EF2178 NR:ns ## KEGG: EF2178 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 433 1 433 433 807 99.0 0 MGKVLNRIGRLILLVTMIGSYTMWVVGIDAPVTKYMYANSSILLLIAVILVLLLNCTKLK FIDWLTVALALATWLLFHFTESIRHSTMQTDTMIPLIILLVLCFKVCVFDRVDQTLLLIV SLVALSATLYRMSVELPQLIPADEIFKESNKLESIWINTNTIGATLMFSTMMASSLIKAY RNKVFNLLLLPVYIGGVLGTWVSQSKTSFAILVGFILVDNLLPKRFLQRSKVWLFGFVGV AALGPLLFYLCAESDTVDLFTGRERIWHEFFAKWLSDPQHIKVGMEPFVASWKPLGTHNA FLFTLSNFGVIGYLILFGFLVSMILLIGFRKKTLDRLQVSLLLGFLLIWIHSFMEDILLA PHWMPIVYSFLGLAFYFRPEKKRGRHESPTTPKRRKRVKQTSPVSNEERPIAPVDEEGWD QPEELSRVQRHRR >gi|307679044|gb|GL456753.1| GENE 53 47025 - 48422 1225 465 aa, chain + ## HITS:1 COG:CAC2330 KEGG:ns NR:ns ## COG: CAC2330 COG2148 # Protein_GI_number: 15895597 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sugar transferases involved in lipopolysaccharide synthesis # Organism: Clostridium acetobutylicum # 1 450 1 449 461 282 36.0 8e-76 MTSKSEWSNARRIVIILADVLLYNLSIILGFMVKFGREIPSFNFVAYEKSAIYISIFFIF LNLLLGAYIFYNRKISDIIFVTVIGQILMTLTIMIVTFAGRWFTFPRSVLGYSFIIGIIV LSLWRILVYYLYLKVSNERKVVLLGKENQVMRSIQNFMSDKNNKHKVTSVVVSNYYENLK KIIDEIDIVYISSNVDENEKVKLYQLIVKHKKKIFLDTSFENLIMLKPNMMNFEDESIIE VSNFEIQPEENFIKRLFDILVSVCLFVITSPLMLIAAILVKATSPGPVIYKQTRITLDQR EFSILKFRTMSATAEAKSGPVLSTSNDSRVTTVGKYLRALRIDELPQLINVIRGDMSIVG PRPERPFFVDQFNQENPNYYLRHNVRAGITGYAQVYGKYASDYNSKLNFDLLYIKNYSLL LDMKILLQTIKILFDKVSSRGLDESEEREELTMDYCKENAIRIYR >gi|307679044|gb|GL456753.1| GENE 54 48557 - 49315 627 252 aa, chain + ## HITS:1 COG:BH3661 KEGG:ns NR:ns ## COG: BH3661 COG0463 # Protein_GI_number: 15616223 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Bacillus halodurans # 5 248 10 254 257 187 39.0 2e-47 METALVSIIMPMYNAGKFLSKSIESVLEQTYQNWELLLIDDGSKDDSIDIALAFMEKDSR IFLLKNEQNMGIAKTRNKGIEASKGQYIAFLDSDDLWLPNKLEVQIKWMEEKKLLFTCSS YFVCNENGNITHERNFSEGPQTYQDLLKTNTIGCLTVVVESNLLKRHLMPDLKHEDYATW LNILKEINTVYFINEKLAIYRKLTTSTSSNKWNTISWVWKILRQNEQFSVIKSSFYLMRF LFYTTFKYAKNE >gi|307679044|gb|GL456753.1| GENE 55 49331 - 49534 255 67 aa, chain + ## HITS:1 COG:SP1367 KEGG:ns NR:ns ## COG: SP1367 COG3475 # Protein_GI_number: 15901221 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: LPS biosynthesis protein # Organism: Streptococcus pneumoniae TIGR4 # 4 64 215 275 281 73 54.0 1e-13 MEQIADFKSAIFVPFEDTKMPIPVDYKRYLTQVFGDYMQLPPEEDRQPHHEALIVDAKKS YTEYLKK >gi|307679044|gb|GL456753.1| GENE 56 49778 - 51122 1285 448 aa, chain + ## HITS:1 COG:no KEGG:EF2174 NR:ns ## KEGG: EF2174 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 447 1 447 893 734 95.0 0 MKKIISGMLICTVLLNSFSVIASGEELVKTETTGETGLVTQATSETTTNSTEDTSSVTEE NTSERDSSTSSTKEESLDSSTNSTTEEHSSVSETNTTDSKTEASQSSEVEKKTIDQDEAD YQEAAREGTNHKKGTYAMKNGLSSRVARATVANVYANDPNLPGKNFIDVSSWNGDISVAE YQKIKSYGVTGVSVKLTEGTWYVNPYAAGQIRNAKAAGLKVSAYHYSMYVSAATAQDEAR YFAQAAANSGLDKNTIMFNDAEDPTLTNNGRNAHANSVAFNQQLKALGYKNDALYVGKWW LTNGYIDTSAFGRDRVWVAQYPYTPDSSMQWNNDHGAWQWSSQMYFPGLANYEGRPFDIS MTYSNFLNMGNSSGPDLSKYYTTNPGRVVVMKDETFYNNADFTSKGAAVKKNTLVEVQGI EYSSTGYPRLVTPQGYLTARKDIVLAAI Prediction of potential genes in microbial genomes Time: Tue Jul 5 18:12:50 2011 Seq name: gi|307679043|gb|GL456754.1| Enterococcus faecalis TX0312 genomic scaffold Scfld7, whole genome shotgun sequence Length of sequence - 61474 bp Number of predicted genes - 62, with homology - 62 Number of transcription units - 33, operones - 16 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 393 - 2306 2244 ## COG1193 Mismatch repair ATPase (MutS family) + Prom 2335 - 2394 4.0 2 2 Op 1 1/0.273 + CDS 2424 - 3650 1451 ## COG1785 Alkaline phosphatase 3 2 Op 2 . + CDS 3610 - 3840 388 ## COG1785 Alkaline phosphatase + Term 3850 - 3895 9.1 + Prom 3868 - 3927 8.8 4 3 Tu 1 . + CDS 3952 - 4923 1159 ## COG1834 N-Dimethylarginine dimethylaminohydrolase + Term 4958 - 4997 -0.7 + Prom 5060 - 5119 9.0 5 4 Op 1 . + CDS 5349 - 6038 1037 ## EF2970 hypothetical protein + Term 6074 - 6111 3.1 6 4 Op 2 . + CDS 6126 - 7259 1266 ## EF2969 hypothetical protein 7 4 Op 3 . + CDS 7243 - 7641 312 ## EF2968 cell wall surface anchor family protein 8 4 Op 4 . + CDS 7687 - 7911 216 ## EF2967 hypothetical protein + Term 7913 - 7966 14.4 + Prom 7917 - 7976 8.0 9 5 Op 1 2/0.000 + CDS 8077 - 10086 1643 ## COG3711 Transcriptional antiterminator 10 5 Op 2 11/0.000 + CDS 10088 - 10387 189 ## PROTEIN SUPPORTED gi|148984431|ref|ZP_01817719.1| PTS system, IIB component, putative 11 5 Op 3 . + CDS 10402 - 11769 1817 ## COG3037 Uncharacterized protein conserved in bacteria + Term 11781 - 11848 26.2 - Term 11774 - 11828 20.1 12 6 Tu 1 . - CDS 11832 - 12806 747 ## COG0657 Esterase/lipase - Prom 13039 - 13098 6.0 + Prom 12909 - 12968 4.2 13 7 Op 1 13/0.000 + CDS 13018 - 14013 829 ## COG1609 Transcriptional regulators + Prom 14027 - 14086 6.7 14 7 Op 2 6/0.000 + CDS 14111 - 15022 1200 ## COG0524 Sugar kinases, ribokinase family 15 7 Op 3 1/0.273 + CDS 15038 - 15433 522 ## COG1869 ABC-type ribose transport system, auxiliary component 16 7 Op 4 . + CDS 15454 - 16341 1002 ## COG4975 Putative glucose uptake permease + Term 16346 - 16392 6.6 17 8 Tu 1 . - CDS 16361 - 17245 1058 ## COG0583 Transcriptional regulator - Prom 17279 - 17338 6.7 + Prom 17238 - 17297 5.8 18 9 Op 1 1/0.273 + CDS 17353 - 17934 667 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 19 9 Op 2 . + CDS 17934 - 18671 895 ## COG4221 Short-chain alcohol dehydrogenase of unknown specificity + Term 18761 - 18818 2.1 + Prom 18720 - 18779 5.1 20 10 Tu 1 . + CDS 18853 - 20166 1656 ## COG2252 Permeases + Term 20188 - 20238 11.2 + Prom 20222 - 20281 7.0 21 11 Tu 1 . + CDS 20326 - 21540 1611 ## COG0301 Thiamine biosynthesis ATP pyrophosphatase + Term 21545 - 21594 11.5 + Prom 21583 - 21642 4.5 22 12 Op 1 . + CDS 21670 - 22317 593 ## COG2344 AT-rich DNA-binding protein 23 12 Op 2 . + CDS 22381 - 22869 710 ## COG2077 Peroxiredoxin + Term 23051 - 23099 -0.6 + Prom 23164 - 23223 8.3 24 13 Tu 1 . + CDS 23261 - 25903 3085 ## COG0525 Valyl-tRNA synthetase + Term 25908 - 25959 15.5 - Term 25900 - 25942 10.1 25 14 Op 1 . - CDS 25949 - 26548 557 ## COG0398 Uncharacterized conserved protein 26 14 Op 2 . - CDS 26541 - 29105 2154 ## COG4485 Predicted membrane protein - Prom 29125 - 29184 6.5 27 15 Op 1 . + CDS 29354 - 30676 1618 ## COG0285 Folylpolyglutamate synthase 28 15 Op 2 . + CDS 30663 - 31319 729 ## COG0637 Predicted phosphatase/phosphohexomutase 29 15 Op 3 . + CDS 31375 - 32073 561 ## COG2003 DNA repair proteins + Prom 32101 - 32160 7.8 30 16 Tu 1 . + CDS 32227 - 32427 373 ## COG1278 Cold shock proteins + Term 32446 - 32479 3.1 - Term 32472 - 32519 11.4 31 17 Op 1 7/0.000 - CDS 32533 - 34218 1969 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 32 17 Op 2 . - CDS 34220 - 34432 231 ## COG5503 Uncharacterized conserved small protein - Prom 34476 - 34535 7.4 - Term 34529 - 34565 -0.4 33 18 Tu 1 . - CDS 34738 - 35124 377 ## COG2832 Uncharacterized protein conserved in bacteria 34 19 Op 1 35/0.000 + CDS 35353 - 36258 914 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 35 19 Op 2 35/0.000 + CDS 36267 - 36743 335 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 36 19 Op 3 35/0.000 + CDS 36679 - 36813 116 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 37 19 Op 4 . + CDS 36810 - 38579 217 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P + Term 38622 - 38675 9.1 + Prom 38606 - 38665 3.2 38 20 Op 1 . + CDS 38822 - 39313 455 ## COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily 39 20 Op 2 . + CDS 39330 - 40478 1367 ## COG0381 UDP-N-acetylglucosamine 2-epimerase + Term 40487 - 40532 2.5 + Prom 40480 - 40539 2.2 40 21 Tu 1 . + CDS 40577 - 41230 688 ## COG0546 Predicted phosphatases + Prom 41345 - 41404 11.0 41 22 Op 1 3/0.000 + CDS 41438 - 42823 1436 ## COG1559 Predicted periplasmic solute-binding protein + Term 42841 - 42886 9.8 + Prom 42933 - 42992 15.3 42 22 Op 2 . + CDS 43084 - 43563 793 ## COG0782 Transcription elongation factor + Term 43575 - 43612 2.0 + Prom 43635 - 43694 8.4 43 23 Op 1 7/0.000 + CDS 43714 - 44445 865 ## COG4758 Predicted membrane protein 44 23 Op 2 19/0.000 + CDS 44442 - 45545 937 ## COG4585 Signal transduction histidine kinase 45 23 Op 3 1/0.273 + CDS 45520 - 46152 869 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain + Term 46161 - 46226 17.6 + Prom 46169 - 46228 8.2 46 24 Op 1 . + CDS 46256 - 46921 890 ## COG0569 K+ transport systems, NAD-binding component 47 24 Op 2 . + CDS 46994 - 47305 541 ## COG4841 Uncharacterized protein conserved in bacteria + Term 47330 - 47366 -0.4 + Prom 47426 - 47485 7.6 48 25 Op 1 2/0.000 + CDS 47509 - 48447 1059 ## COG0463 Glycosyltransferases involved in cell wall biogenesis + Term 48456 - 48486 1.3 + Prom 48564 - 48623 3.6 49 25 Op 2 10/0.000 + CDS 48657 - 49727 1090 ## COG3839 ABC-type sugar transport systems, ATPase components 50 25 Op 3 38/0.000 + CDS 49727 - 50602 924 ## COG1175 ABC-type sugar transport systems, permease components 51 25 Op 4 . + CDS 50607 - 51425 696 ## COG0395 ABC-type sugar transport system, permease component 52 25 Op 5 . + CDS 51409 - 52698 1341 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 53 25 Op 6 . + CDS 52722 - 54002 1703 ## COG1653 ABC-type sugar transport system, periplasmic component + Term 54022 - 54080 12.0 54 26 Tu 1 . + CDS 54100 - 55653 1860 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases + Term 55669 - 55719 5.1 - Term 55649 - 55715 15.3 55 27 Tu 1 . - CDS 55718 - 56680 975 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases - Prom 56712 - 56771 5.8 - Term 56749 - 56799 15.4 56 28 Tu 1 . - CDS 56829 - 57839 963 ## COG0492 Thioredoxin reductase - Prom 57969 - 58028 5.1 + Prom 57956 - 58015 6.0 57 29 Tu 1 . + CDS 58044 - 58634 911 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family + Term 58647 - 58707 13.0 + Prom 58674 - 58733 6.9 58 30 Tu 1 . + CDS 58799 - 59005 233 ## EF2896 hypothetical protein + Term 59009 - 59048 8.0 - Term 58997 - 59035 8.6 59 31 Tu 1 . - CDS 59039 - 60205 1140 ## COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities - Prom 60326 - 60385 7.6 + Prom 60202 - 60261 6.5 60 32 Op 1 . + CDS 60371 - 60757 187 ## PROTEIN SUPPORTED gi|86608329|ref|YP_477091.1| putative ribosomal protein S1 61 32 Op 2 . + CDS 60831 - 61193 361 ## EF2893 hypothetical protein + Term 61202 - 61248 12.1 - Term 61190 - 61235 10.3 62 33 Tu 1 . - CDS 61275 - 61433 79 ## gi|256618321|ref|ZP_05475167.1| predicted protein Predicted protein(s) >gi|307679043|gb|GL456754.1| GENE 1 393 - 2306 2244 637 aa, chain + ## HITS:1 COG:CAP0099 KEGG:ns NR:ns ## COG: CAP0099 COG1193 # Protein_GI_number: 15004802 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Clostridium acetobutylicum # 1 626 1 625 629 518 43.0 1e-146 MNHETIQKLQFTTILKEVQTRAIGEYSKERLAKMVPATRLETVQSRLTETTEARLIIDSG QHVPFMGLSQITRLLQQVKKGLILTPNELIEVADFLRSSQRIQKFFEKNQYQTPRLFSYS QHLADFRAIEEQIYTKIHNQKVATDASRQLRKIRRQINECQQEIETKVTKFLRNKNNQLY IQENMMVKKGEHYTVPIKASYKNKVSGTIIEQSNKGQTVFIEPVAISKLNEQLTLLKAEE TAEEYQILAELTGLINEQERLVDQAVDTMTTLDIIFARGKYSREIGGITPKVNKEERLRI VQGKHPLLLEHAVPLTFSLGAEYRGLVITGANAGGKTVVLKTVGLLTVMTQFGLQIPAQA GTEIPVLDEIFVDIGDQQNLENALSTFSGHMKNIAEMLRNVKRHTLVLLDEIGSGTEPNE GAGLAIAIMETMYQKGALVVATTHYGEIKRFAQEHDDFVPAAMAFDRETLTPKYQLKIGE VGDSQALWIARKMKMEPQLIEKAAHYIQRKEYPTNRSLFKPLKAKETTFATFVEETHRYQ KGDRVLLTETQQIGLVFTDEGEQEIQVFVNDKIENVPRRRLKLQAKAQDLYPQDYDLESL FTDFHERKKLKDIERGSKKAQKQLRKEAEKRAARRDK >gi|307679043|gb|GL456754.1| GENE 2 2424 - 3650 1451 408 aa, chain + ## HITS:1 COG:BS_phoB KEGG:ns NR:ns ## COG: BS_phoB COG1785 # Protein_GI_number: 16077641 # Func_class: P Inorganic ion transport and metabolism # Function: Alkaline phosphatase # Organism: Bacillus subtilis # 35 397 27 395 462 426 64.0 1e-119 MKKRALLGVTLLTFTTLAGCTNLSEQKSGEKQTEVAEAKATESEKASVKNVIFMIGDGMG NPYTTGYRYFKANHSDKRVPQTAFDTYLVGQQATYPEDEEENVTDSASAATAMAAGVKTY NNAIALDNDKSKTETVLERAKKVGKSTGLVATSEITHATPAAYGAHNVSRKNMAEIADDY FDDQIDGQHKVDVLLGGGSELFARKDRDLVKEFSQAGYGHVTDKKSLNENQDDKILGLFA PGGLPKMIDRTEEVPSLADMTEAALQRLDKNEKGFFLMVEGSQIDWAGHSNDIVGAMSEM QDFEAAFEKAIDFAKKDGETLVVTTADHSTGGLSLGKGDQYNWLTEPLHAAKRTPDFMAE EIIKNGNVEKTVTEYIDFQLSEAELKAVKTAAESKDVEKNRSGIKKDF >gi|307679043|gb|GL456754.1| GENE 3 3610 - 3840 388 76 aa, chain + ## HITS:1 COG:SA2420 KEGG:ns NR:ns ## COG: SA2420 COG1785 # Protein_GI_number: 15928213 # Func_class: P Inorganic ion transport and metabolism # Function: Alkaline phosphatase # Organism: Staphylococcus aureus N315 # 3 59 416 472 474 70 57.0 5e-13 MLKKIAQALRKIFDERSNTGWTTGGHTGEDVNVYAYGPQAEAFSGQIDNTDQAKIIFGLV DGTGQKAEIKDKGIGK >gi|307679043|gb|GL456754.1| GENE 4 3952 - 4923 1159 323 aa, chain + ## HITS:1 COG:MA3652 KEGG:ns NR:ns ## COG: MA3652 COG1834 # Protein_GI_number: 20092452 # Func_class: E Amino acid transport and metabolism # Function: N-Dimethylarginine dimethylaminohydrolase # Organism: Methanosarcina acetivorans str.C2A # 2 323 4 332 334 149 30.0 6e-36 MKKMHVESEFAPLRSVVLAQSQFCLPDKFDEADTTFLTEENARLTQNNEGRDLADFAPEQ QVCWEKEKEVMQGVLESYGVEVFRPRLLTTYEKEHGKELGVGYSNFFSRDPFFTIGNLLI EGNLRFQHRRQEILPIRPIIQQWTQEAEGYYFAAPQPDISEGALSEAGPFIEGGDVLVLG TTIFVGYSGLASNLAGIQWLANMIGHFGYEVVPVRLHPHILHLDCALSLLREGLMIVCEE AFLDGLPAQLANWEKIHVTLQEAAYLVTNGLPLNEETYITDQSFTTLIPQIEAKGIKVEA IDYHVSRMLGGSFRCTTQALIRE >gi|307679043|gb|GL456754.1| GENE 5 5349 - 6038 1037 229 aa, chain + ## HITS:1 COG:no KEGG:EF2970 NR:ns ## KEGG: EF2970 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 229 1 229 229 292 98.0 8e-78 MKKKTLVTLFAGTAILGASIAPAAAHATTTGTTPANVEMTSGSLPGGNGDGEDGSTQEPE PGTNTNFDLLYVPTEFKFASTEVSSDLSAISLDANGTQTKRYAVGDVRGTQAGWSVTAGV AEMKNGTATLEGSITFAQTGAVAKYDETAKTYSRDVAAFAADPGSPEFAGTTIPVGGAAV SIATAAVGKGQGTWDSELSNVKLNITTPSSQITNGAYTGNVTWTLVAAP >gi|307679043|gb|GL456754.1| GENE 6 6126 - 7259 1266 377 aa, chain + ## HITS:1 COG:no KEGG:EF2969 NR:ns ## KEGG: EF2969 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 377 1 377 377 696 99.0 0 MKTMRWLIVTVFICVMALSIPSAVQAEEADDNMNTKFTVKPNIPENQAKNTQSYYDLIVK PGQKQEVELSLINKTDEELTIDLNLANAVTNDNGLIVYNDFEKKPDSSLKVPLTTLIKLP EEHVKVPAKKTVTAKMTVEIPANGFQGLVLGGVYASLAEDEKEEKGKSTGLTSRYGFNVA IALRMSEDTPMYLAETLQLVKLVPTIALGNKSVQAVIQNPTSAIFPEVRLEGKVTKKGET KEYAKRILPSVRFAPNSTMNFHLDFGKEDVRPGTYIFEGKAVLKEDEQQVWPFKQEFTIS SQEAKKLNKEAVVKLVLPTWWNQAFYGLLAATIVSLILAICRFTQQKATLKQQAYLQQEK QAALKNRQGARYDDNEK >gi|307679043|gb|GL456754.1| GENE 7 7243 - 7641 312 132 aa, chain + ## HITS:1 COG:no KEGG:EF2968 NR:ns ## KEGG: EF2968 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 11 132 1 122 122 209 99.0 3e-53 MTMKSKGSLLVTLGILLTVGIASLIVSSESFAEEVGQTNIGVTFYGGKEPLKTEGVIKPI EQPVTDKDKKTSQQQDKVSRKTTAKTNPTNAQTSLPRTGERNSTWLYSLGIACLLVVLTS FYYLNKKRKKEK >gi|307679043|gb|GL456754.1| GENE 8 7687 - 7911 216 74 aa, chain + ## HITS:1 COG:no KEGG:EF2967 NR:ns ## KEGG: EF2967 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 74 1 74 74 90 100.0 2e-17 MEITMWIWICAGLAVLCFALFLLFLVNSMNFVHLAKPKQSLVKQSMFSWLLLVMCGGWVA VAILLNIALQTQLT >gi|307679043|gb|GL456754.1| GENE 9 8077 - 10086 1643 669 aa, chain + ## HITS:1 COG:SPy1952_1 KEGG:ns NR:ns ## COG: SPy1952_1 COG3711 # Protein_GI_number: 15675752 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Streptococcus pyogenes M1 GAS # 8 491 12 500 532 184 26.0 5e-46 MNYKISYLLDEYAGQKIALSLAQQITDLSQRELVTQLSTIGGEVQQNTVSIPNLSANEWG KQLFQQRQVIYSETERQALIFLLTYSEIEELSVYHYQNFLDVSKGTILADIKKVRHQLAT ENIALSYERKRGFYLEGDEFRIRRFGKNWLARLLQQKSGTFALFCWLSQHQMSQYAKMRD GIQLAVQEAQLQLVPSRLDEISYFLAFSQKRLGKYKTVVWPENQLIQSLRAYPVSRRILS DLVGPVANVETESLFFTICLMTALQGELRDTKLEFLLDISGEIIRKMELLAVVQFEQPRE LLMNVYYHLVPAYFRINYGFYLPNVLIKDIRQSYRSLYHLCEQALAPLEKLTKRSIPSEE IGFFTILFGGEIFGQKNEQRQEKLKALIVCPSGISSSLILQSELRRLFPMIEFKETNAVR EIENVSEKSYDIIFSTVPIETAKKVYLTKPIMSSLEKNQLMHQVQSDWLLPGISMPDVKD ILDALKPYISLKKGVTEAQLYRVLHRKMNKILEKEEDLRPMLSELLTTETVQVLPEVADW RAGITEAAKPLLKNGSITEKYIDAMIQKVESFGPFIHICPDVALPHARPEDGVNQLGMSL LKIQKSVDLLEDPKHEIHLFICLAASDNETHLRALSSLTKILSKKESLHRLVAAETVPEI LSIIQEGEK >gi|307679043|gb|GL456754.1| GENE 10 10088 - 10387 189 99 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148984431|ref|ZP_01817719.1| PTS system, IIB component, putative [Streptococcus pneumoniae SP3-BS71] # 1 96 2 93 94 77 40 2e-13 MKIFTVCQSGLGTSFMVQMNIQQILEEVGVDTDNFQIDHTDVGSASGDMADYFFVEKTLQ DALGSIPDEKIIPLNAIIDYDETKEKVLKVLDDNGIAHQ >gi|307679043|gb|GL456754.1| GENE 11 10402 - 11769 1817 455 aa, chain + ## HITS:1 COG:SP2129 KEGG:ns NR:ns ## COG: SP2129 COG3037 # Protein_GI_number: 15901943 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 4 454 1 448 448 421 55.0 1e-117 METLLNLFVSIVSQPAILVSLIALLGLVLQKKKFSDVVQGTLKTFVGFLVLIGGAGLLAN SLTPFAEMFQTALNTQGVVPSNEAVVAIALQQYGTPTALIMLVGMVVNILLARFTRFKYI FLTGQAMMYVSCLTAVILVGAGFSVSLPMILLGGLFEGTLLTVTPALCQPFMKQITGNDK VAMGHTGNIGYAASGFIGKVFGNKEKSTEDIKIPKSFGFLRDSTISIMILMSIVYVILAL LAGTGYVEHELSNGENAIIFSLIQAGTFTAGFVVVLQGVRMVLGEIVPAFQGIAKKLVPN SKPALDVPIIFPYAPNAVLIGFFVSFIVGTISMLAMVGLNTTVIIPGVVGHFFCGAAAGV FGNSTGGRRGAILGAAFNGLLISWLPLFILPVLGDLQLASSTFADTDYLIPGLFLGKLGE AGPSLLVGGIIAFVVVVLLASAVLTMREKKVAEEN >gi|307679043|gb|GL456754.1| GENE 12 11832 - 12806 747 324 aa, chain - ## HITS:1 COG:mlr1247 KEGG:ns NR:ns ## COG: mlr1247 COG0657 # Protein_GI_number: 13471310 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Mesorhizobium loti # 92 322 65 295 317 87 27.0 4e-17 MKKKSIGLLLASAYLFHTRSRQKSLKACLFEDSLRLSQIARLERNPKVTKAFYHWQRSLN EQVTLPKHLRHLFPLQEMTQFPTMYRMSNSVIAPTKKAVLYLHGGGFTLNLAYSQLDFSY KLIEDLSFATDYFIPVYPLAPNKSFADIYNHCYAAYQEILQHYDPEDVILLGDSAGGTLV LNVLQNLATDFPERLPKAAVLISPWLDGHLDIPVAKSYQKKDKMIGMNYLQLIAHEIDDT ANHSTLSLNCLSFDYQKFPPLFFVGGTHEVFCPSYHQFLKQLGPRPQDTCRLVPGMQHVF AMKQYLPEGRQARKQIAQFIQEQW >gi|307679043|gb|GL456754.1| GENE 13 13018 - 14013 829 331 aa, chain + ## HITS:1 COG:SA0261 KEGG:ns NR:ns ## COG: SA0261 COG1609 # Protein_GI_number: 15925974 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 4 328 2 327 332 265 43.0 1e-70 MTNKKVTIKDVANDSGVSITTVSQILNGNGARFSGKTVEKVLAAKERLNYQPDYFAQRMV MKKSKTIGVIVPDITNPFFAQLIRGIESVLYKENFILMLCNADQDVTREHEYLTELIRRS VDGFVIASSEISNQTINETLRAKKIPFIVLDQKKAEGFSDAVLTDDYRGGQLAAKHLQEQ RHKQVVVVMPPHAPVNIQQRLKGFCSVYTEKVQLIETELSKTGGYQAVPEILKTESTGIF AINDEIAFGLYRGLAEAGKKIPEDYSIIGYDNVDMCEYVSPPLTTIAQPVFQLGQTTATL LLERIHQPAKDWEEQTLPVQLIERFSTAPLK >gi|307679043|gb|GL456754.1| GENE 14 14111 - 15022 1200 303 aa, chain + ## HITS:1 COG:SA0258 KEGG:ns NR:ns ## COG: SA0258 COG0524 # Protein_GI_number: 15925971 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Staphylococcus aureus N315 # 2 300 3 301 304 246 48.0 4e-65 MNAVTIIGSINLDTTLRVKEMPKPGETIHAIEHFTAGGGKGANQAVAAKRSGAETYFIGA VGNDGAGAMMTDLMSQDEINLTGVTTLEKTATGQAFIMVDNAGENSIMIYAGANNAFTPK QVQEHQEIIEKSDFVIAQFESAIDSTIAAFKIAKKAGVKTILNPAPALEQVPEELLNVTD MIVPNETETEILTGIKITDEASMRKAAEALHQLGIEAVIITVGSKGAFYDVNGRSGIVPA FKVKAVDTTAAGDTFIGALSSILEKDFSNLEEAIRYGNKASSLTVQRFGAQPSIPYQHEL ADK >gi|307679043|gb|GL456754.1| GENE 15 15038 - 15433 522 131 aa, chain + ## HITS:1 COG:SA0259 KEGG:ns NR:ns ## COG: SA0259 COG1869 # Protein_GI_number: 15925972 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type ribose transport system, auxiliary component # Organism: Staphylococcus aureus N315 # 1 131 1 134 134 120 55.0 5e-28 MKKTKVINSDISRVIAQMGHFDKLSIGDAGMPVPRTTEKIDLAVTNGVPSFMEVLNNVLE ELAVQRIYLAEEIKTENPDMLTAIKTRLPETPISFIPHTEMKQELNNCHAFIRTGEMTPY ANILLESNVVF >gi|307679043|gb|GL456754.1| GENE 16 15454 - 16341 1002 295 aa, chain + ## HITS:1 COG:SA0260 KEGG:ns NR:ns ## COG: SA0260 COG4975 # Protein_GI_number: 15925973 # Func_class: G Carbohydrate transport and metabolism # Function: Putative glucose uptake permease # Organism: Staphylococcus aureus N315 # 1 295 1 292 293 329 67.0 4e-90 MNATALLIGLGPLLGWGLFPTIASKIGGRPVNQILGTSLGTLIFAAIFSMINGLAFPAGM DLFFSILSGVGWACAQIITFKCFTMIGSSRAMPVTTAFQLLGASLWGVFFLGNWPGATAK LLGAFALVLIMIGAKMTVWSETESAESAGIMKKAVLLLAVGEIGYWAYSAAPQATAIDGM HAFLPQAIGMVIVAVIYSAVVTIKGGETSPFIEAVSYKQIFSGFFFAFAALTYLISAQPD MNGLATGFILSQTSVVLATLTGIWFLGQKKTAKEMTVTIIGLVLILAAATITVMI >gi|307679043|gb|GL456754.1| GENE 17 16361 - 17245 1058 294 aa, chain - ## HITS:1 COG:lin0450 KEGG:ns NR:ns ## COG: lin0450 COG0583 # Protein_GI_number: 16799526 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 1 292 1 291 291 311 53.0 8e-85 MELRVIHYFLAVVQEKTISGAAKQLHVSQPTLSKQLKELEEELGVTLFIRGNRQIQLTPE GEYLAKQGQDILSLANKTVTNLSQNEFINGEITIGGGETKAMSFLANALQQITSQHSADI HLHLYSGNADDVIERLDKGLLDFGLIIEPAPKQKYSYLTLPVVDTWGLITVKDHPLATKN VITAADLKEEPLFISRQAQVPSQLSDWLEASLDQFRIVGTYNLLYNASLMVEAGLGSALS IDGILETKQTNLRFIPLYPALTAKISLIWRKNTVLSTAAALFLEQIKKSIQRPE >gi|307679043|gb|GL456754.1| GENE 18 17353 - 17934 667 193 aa, chain + ## HITS:1 COG:lin0451 KEGG:ns NR:ns ## COG: lin0451 COG0110 # Protein_GI_number: 16799527 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Listeria innocua # 1 189 1 189 189 195 54.0 4e-50 MLTKNLQELIATGSIDKDEPLFQLIHQIQEENSRYLIELNQQAYTHNEVRNLLATIIQDK IDETVTILLPFYTDFGRNIHFGKNIFINRAAMFVDLGGIIIEDNVLIGPRVNLLSVNHPE LPMKRRGVLLAPITIKKFAWLGAGVTVLPGITIGENAIVAANATVTKDVPANAIVAGTPA KIIRWIQEDKEEI >gi|307679043|gb|GL456754.1| GENE 19 17934 - 18671 895 245 aa, chain + ## HITS:1 COG:XF1744 KEGG:ns NR:ns ## COG: XF1744 COG4221 # Protein_GI_number: 15838345 # Func_class: R General function prediction only # Function: Short-chain alcohol dehydrogenase of unknown specificity # Organism: Xylella fastidiosa 9a5c # 4 243 2 245 247 208 46.0 6e-54 MKSLSEKVIVIMGASSGIGEATARLLARKGAKLVIAARRQERLIAIKKELPEATILVQQA DVTKEEEVQRVIKLTMEKYGRIDVLFNNAGVMPTAPLIEAPKGEWRQMLDINIMGVLNGI AAVLPIMVEQKSGQIITTDSVAGHVVYPDSAVYCGTKFAVRAIMEGLRQEQRENNIKSTI ISPGAVQTELYQTISNRVVAETLHLEQLSWGLKAEDIAQAVVFAIDTPDRMSISEMVVRP TTQTI >gi|307679043|gb|GL456754.1| GENE 20 18853 - 20166 1656 437 aa, chain + ## HITS:1 COG:BH0608 KEGG:ns NR:ns ## COG: BH0608 COG2252 # Protein_GI_number: 15613171 # Func_class: R General function prediction only # Function: Permeases # Organism: Bacillus halodurans # 5 435 1 433 434 416 59.0 1e-116 MKEKISSYFELEQLNTNMKREMLAGFTTFISMAYILFVNPTVLGASGMDEGAVFTATALA SALGCILMGVLAKYPIATAPALGINAFFAYSVSVGMGIPWQTTLAGVFVASLIFILITIF KLRELIIDAIPADLKFAISGGIGLFIAFLGLSQGGLIVANDATLVGLGPLNVGSTWVTIV GLVVTAILLVRRVPGGIFIGMAISTIVGLATGVIPMPDKIISSAPSLEPTFLVALGHVKD INTIQMWVVVLTFLLVTFFDTAGTLVGLANQAGFMKDNKMPRVGKALAADSTAMLAGSLL GTSPVGAYVESSAGIAVGGRSGITAITTGILFIFSLLFSPLLAVVTSQVTAPALIIVGVL MAQSLSKIKWNEMEIAIPSFLILLGMPLTYSISDGIALGFIFYPITMIAAKRGKEVSPIM YGLFFVFVGFMWILNAQ >gi|307679043|gb|GL456754.1| GENE 21 20326 - 21540 1611 404 aa, chain + ## HITS:1 COG:SP0881 KEGG:ns NR:ns ## COG: SP0881 COG0301 # Protein_GI_number: 15900764 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis ATP pyrophosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 404 1 404 404 534 66.0 1e-151 MKYTEIMVRYGELSTKGKNRKTFIMQLAQNVKRALADFPALKIHAYRDRMHILLNGEDSE EVIPKLSKVFGIQNFSPSIRIEKEMPAIRAMVQEVVREVYTPGKTFKITAKRSDHSFELD SNGLNQELGGAVIEAIPEIQVQMKKPDINLRIEIRKDAAYLSYETIRGAGGLPVGTSGRG MLMLSGGIDSPVAGYLAMKRGVEVEAVHFASPPYTSEQALQKAKDLAEKLVPYVGTIQFI EVPFTEIQEEIKRVVPQGYLMTITRRLMLRLTDAIREMRKGLVIINGESLGQVASQTLQS MVAINEVTSTPIIRPVVSMDKTEIIEIAEKIDTFELAIQPFEDCCTIFAPPQPKTRPRLD KAQDYEARLDLEGLMARALEGLKITEISAETAKDKQEDEFADFL >gi|307679043|gb|GL456754.1| GENE 22 21670 - 22317 593 215 aa, chain + ## HITS:1 COG:lin2178 KEGG:ns NR:ns ## COG: lin2178 COG2344 # Protein_GI_number: 16801243 # Func_class: R General function prediction only # Function: AT-rich DNA-binding protein # Organism: Listeria innocua # 4 207 7 210 215 219 52.0 3e-57 MEKKMPKATAKRLPVYLRYLKMLGDSGVKRIKSREFSEMIQIPSATIRRDFSHVGELGRS GYGYDVPYLIEVFSNILNTQEEKRIALIGCGNLGKALLKNNFRRNENLNIVCAFDNDSAL VGTTINGLLVHDMSELEAFVRQEGVTVAISTVPSHHAQKAIDKIVQAGVTAILNFAPDRV SVPANVSVQYIDLTTELQTLIYFNETFSLANSPKQ >gi|307679043|gb|GL456754.1| GENE 23 22381 - 22869 710 162 aa, chain + ## HITS:1 COG:BS_ytgI KEGG:ns NR:ns ## COG: BS_ytgI COG2077 # Protein_GI_number: 16080001 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Bacillus subtilis # 3 162 4 165 167 146 48.0 2e-35 MNVTRKGHVLELTGEQPKVGTKAPVFSLKNLNNQEINLADYKGKTVLISVVPDIDTRVCS LQTKRFNQEAAKLDGVQIITISNNTVEEQANWCAAEGVEMEMLHDTEDSFGAAYGLYIPE MGRLARAIFVIDPEGTLVYEEIVSEVSSEPDYQQALEAAKKV >gi|307679043|gb|GL456754.1| GENE 24 23261 - 25903 3085 880 aa, chain + ## HITS:1 COG:SPy1568 KEGG:ns NR:ns ## COG: SPy1568 COG0525 # Protein_GI_number: 15675460 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Valyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 7 880 4 880 882 1318 72.0 0 MSEEKNLPTKYQPTEIEAGRYQKWLDQDLFKPSGDKKAKPYSIVIPPPNVTGKLHLGHAW DTTLQDMIIRQKRMQGFDTLWLPGMDHAGIATQAKVEEKLAQQGISRYDLGREKFVDQVW EWKEEYASHIREQWAKMGLSLDYSRERFTLDEGLSEAVRKVFVSLYEKDLIYRGEYIINW DPKAKTALSDIEVIHKDIEGAFYHMSYPLSDGSGVVEIATTRPETMLGDTAIAVHPEDER YQELIGKTVVLPLVDKEIPIIADDYVDMEFGTGVVKITPAHDPNDFEVGNRHDLPRVNVM NEDGTMNELAGKYEGMDRFAARKAIVSDLKELGRLIKIETMNHSVGHSERTGVVVEPRLS TQWFVKMGPLAEKAMKNQETEDAVEFYPPRFNQTFLRWMENVHDWVISRQLWWGHQIPAW YHKETGEMYVGMEAPADSENWVQDSDVLDTWFSSALWPFSTMGWPDEASEDYQRYFPTST LVTGYDIIFFWVSRMIFQSLEFTGERPFQNVLIHGLIRDEQGRKMSKSLGNGIDPMDVIE KYGADALRWFLSNGSAPGQDVRFSYEKMDASWNFINKIWNASRFVIMNVEGMTAADIDFS GEKTVADRWILTRLNETVARVTELFDRFEFGEAGRQLYNFIWDDFCDWYIEMSKEILYGD NEAAKQTTRSILVYTLDQILRLLHPIMPFVTEEIWEKIPHQGESLVVAEYPVVHEEFNDE AAARGMEVLKEVIRSVRNIRAEVNTPLSKPITLLIKTNDTEVEEFLTANTSYLERFCNPE ELVISREIEAPELAMSAVLTGAELFLPLAGLINIEEEIARLEKELDKWTKEVKRVQGKLS NERFVSNAPDEVVEAERAKEKDYLEKQEAVKERIAQLRSI >gi|307679043|gb|GL456754.1| GENE 25 25949 - 26548 557 199 aa, chain - ## HITS:1 COG:SP1720 KEGG:ns NR:ns ## COG: SP1720 COG0398 # Protein_GI_number: 15901553 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 7 199 13 204 205 126 36.0 3e-29 MTNQKKFLNGLIRWLPLVGLVLFFGLILWGYSRGIFHSVASLQAFIKQFGNYAVLCFILL QIVQVIIPILPGGISSVAGMLMFGNLQGLLYSYLGLIIGEFIGFLLVRYYGRSFVKIILS PNKYKKFEEILDKNEHNVKKLLIFTMLVPFAPDDIVCLVAGITDISLKEFMKIVLLLKFW SVATYSYLMLYLFQLFGKL >gi|307679043|gb|GL456754.1| GENE 26 26541 - 29105 2154 854 aa, chain - ## HITS:1 COG:SP2231 KEGG:ns NR:ns ## COG: SP2231 COG4485 # Protein_GI_number: 15902035 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 12 851 14 850 850 211 26.0 5e-54 MKNKSKLLWLGSFFLPFLLLLLVWMTLQLAPFGDNNLLVSDLGTQYMPFLSFLKRSFHEG ITTFYSFSNEIGESIVPLAAYYLLSPFNVLAFFFPYEQLPIAILWIITLKLALMGTTMFS YLKYTYQKVDGTTLLFSTSYSFCGFVTVYSQNFMWLDALILFPLILLGLQRLWDQRKWGL YSITLFLAIVTNYYMGYMICLFAVLYSIYWFFKKNTQPHAIRQFFKQSPLFILVSFLTGT ATSFLLLPAAEGMLYTKKADFDVSTFFLTPKFNTSFFSQLGLGSINYELRLDHLPTVFAG LFVTLLCVAYFQTKQIALKERIASAILLFILFLSFWLEAFNTVWHMFQSPAGFPYRNVFI FSFLLIVFAYEVWLKKVTIPWTAPIIFSLLLVIGYGSLYYGPQKNLLISINYLWLSLLFI WLIFFCLRLAHKKALRNYVVVALFLLVSTELTTNFWISFKHMPFGSQATFAQDYRKHSQL IDEKMASAPELYRMKQVIPSKETGFREINNGYNNPLLYGYAGVSSYTSTLTATTQDTLSA LGLYRKNDRRIAYVDNSQLTNLLLNVKYDFLPIEKPTSEKLLKTVGSTKIMENDEAIGMG FLAPTALTKLKLAKNNPLDAQEELLQTLVPTDKPYFKTASLINEPHHTNETIEATFKVNS TGDLHLYIPNLKWKKVTQLKVNQQVISTPIYIATNQLFNLGHFEKGTTVTLSLTAEQVVD LTNWQLQTLDQTAFNRAVDKLRQQALHVNLTKKGHLNGALNVPENDTQLLYTSIPYDQDW QVKSSLQKEPLKTQRILGGFLAVEVPAGKQQLTFAYHPRMIYLGTAVSGTILLGTAGYLG FKKYRRKRQEATHD >gi|307679043|gb|GL456754.1| GENE 27 29354 - 30676 1618 440 aa, chain + ## HITS:1 COG:L0177 KEGG:ns NR:ns ## COG: L0177 COG0285 # Protein_GI_number: 15673139 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Lactococcus lactis # 3 430 1 423 427 446 53.0 1e-125 MQLTIEEAIEWIHSRLPFGSRPGLDRINALLEKIDHPENKVPTIHIAGTNGKGSTVTYLR CLLEEMGLKVGTFTSPYIESFNERIAINGQPISDEQLITYVEKYQPIIKELDQITEVAGI TEFETLTGMALDYFVNEQVDIAVVEVGLGGLLDSTNVVKPLLTGITTIGKDHTEILGETI AEIAYQKAGIIKEKVPVVTGNICADALAVIEKVAQEKQSPIFRFGKEYQVEYLHPDTQWG EVFNFYGEMGKLTKIKVPLLGRHQVENAAVAIQLFDKYCQLQHLPFKERDITQGLAKAQW PARMERLSDEPLIVLDGAHNDHAVKRLVENLRKEFPQHTIHILFSALATKDVDEMIQDLK QVPNAHLYLTSFDYPKAIALTEMEKYEDDLTEIVSLWQFGLGEILEKMSTDDLLLVTGSL YFVSQVRELLLTIGGNDEEI >gi|307679043|gb|GL456754.1| GENE 28 30663 - 31319 729 218 aa, chain + ## HITS:1 COG:CC2096 KEGG:ns NR:ns ## COG: CC2096 COG0637 # Protein_GI_number: 16126335 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Caulobacter vibrioides # 2 218 5 218 221 150 36.0 1e-36 MKKFDGVIFDMDGLLFDTELIYYTSTQKVADAMGLPYSKEVYLDYVGISDEEVQENYRRI YASYGHDTVEEFIRRSYDDTLQEFRSGNVPLKPGVVEFLDFLDDQKIPRLVASSNVRPAI EMLLSHAGIQDRFVGIVSAEDVKRAKPDPEIFQKARQLLGTEAPKTLIFEDSFHGVSAAH SAGIPVIMVPDLLQPTEVIQEKTLHVLESLHQAPHYLK >gi|307679043|gb|GL456754.1| GENE 29 31375 - 32073 561 232 aa, chain + ## HITS:1 COG:BS_ysxA KEGG:ns NR:ns ## COG: BS_ysxA COG2003 # Protein_GI_number: 16079856 # Func_class: L Replication, recombination and repair # Function: DNA repair proteins # Organism: Bacillus subtilis # 6 229 8 231 231 230 47.0 2e-60 MQVSDLFIREMPSDCLPRERLLAIGEKALSNQELLAILLRTGSKEADVMTVAATLLKQFK QLSYLQQATLNELMAIKGIGQVKAIELRAAIELGCRIYQSSQIKFGKVTSSQQVAQRLLQ EMKGLQQEHLICIYLNTKNDIIQQKTIFKGSLNQSIAHPREIFREAVKYSSARILLAHNH PSGNPTPSPQDIQFTKRMEECGEMMGIQLLDHIIVGDSGYISLREENFFASE >gi|307679043|gb|GL456754.1| GENE 30 32227 - 32427 373 66 aa, chain + ## HITS:1 COG:lin1401 KEGG:ns NR:ns ## COG: lin1401 COG1278 # Protein_GI_number: 16800469 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Listeria innocua # 1 65 1 65 66 97 84.0 4e-21 MEQGTVKWFNAEKGFGFISREDGSDVFVHFSAIQGDGFKTLEEGQAVTFDVEDSDRGPQA VNVEKN >gi|307679043|gb|GL456754.1| GENE 31 32533 - 34218 1969 561 aa, chain - ## HITS:1 COG:SPy1876 KEGG:ns NR:ns ## COG: SPy1876 COG0595 # Protein_GI_number: 15675695 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Streptococcus pyogenes M1 GAS # 3 555 4 556 560 863 74.0 0 MKVNIKNNETGVFAIGGLGEIGKNTYGVQFQDEIIIIDAGIKFPEDDLLGIDYVIPDYSY IVQNLHKVKALVITHGHEDHIGGVPYLLRQANIPIYAGPLALALITNKLDEHGLLREAEL HEINEDTVIRFRKTAISFFRTTHSIPDALGVVVKTPSGNIVATGDFKFDFTPVGEPANLH RMAKLGEEGVLCLLSDSTNAEIPTFTKSEKTIGTSILKIFEKIDGRIIFASFASNIFRLQ QAADAAVKTGRKIAVFGRSMENAIVNGERLGYIKVPKGTFVDAAELNQLPANETMILCTG SQGEPMAALSRIANGTHRQISIQPGDTVVFSSSPIPGNTTSVNRLINLLSEAGAEVIHGK INNIHTSGHGGQEEQKLMLRLMKPKYFMPVHGEFRMLKIHASLAQDTGVPEENCFIMGNG DVLALTADSARPAGHFNANDVYVDGNGVGDIGNVVLRDRRILSEEGLVLAVATVDIKNKE IMAGPDILSRGFVYMRESGDMIHEGQRLLFNALREAMKDKNCTEAKLGEAMTTALQPFLF EQTERHPMILPMIMTATVSDQ >gi|307679043|gb|GL456754.1| GENE 32 34220 - 34432 231 70 aa, chain - ## HITS:1 COG:SPy1875 KEGG:ns NR:ns ## COG: SPy1875 COG5503 # Protein_GI_number: 15675694 # Func_class: S Function unknown # Function: Uncharacterized conserved small protein # Organism: Streptococcus pyogenes M1 GAS # 1 70 1 76 76 65 53.0 2e-11 MIYKVYYQETKIRNPKREDTKSLYMEADSDVIVRQLVEENTPYNIEYVQLLDEKHLAYEQ EHADFTLTEF >gi|307679043|gb|GL456754.1| GENE 33 34738 - 35124 377 128 aa, chain - ## HITS:1 COG:SA0161 KEGG:ns NR:ns ## COG: SA0161 COG2832 # Protein_GI_number: 15925870 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 3 92 2 91 127 57 34.0 9e-09 MKKLFFIFLGSCTFALGTLGIFLPLLPTTGFYLLTAFFWMRSSDKLYNKFLASSYYQKYI QEAFFEKKITRKGKWKLFISMFLLFAIPCLIVRNTLMTTTLAIVYLAHVIGLSWYWRPKK KALELDQE >gi|307679043|gb|GL456754.1| GENE 34 35353 - 36258 914 301 aa, chain + ## HITS:1 COG:lin0616 KEGG:ns NR:ns ## COG: lin0616 COG1132 # Protein_GI_number: 16799691 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Listeria innocua # 17 295 13 291 570 177 35.0 2e-44 MKLMWRYTMRYKKLLFADFICVFGFILIELGLPTILARMIDKGIIPRDMDYIYQQGIWMV VITIIGVAMNILLGYFGARITTNIVRDIRDDLFEKIQTFSHSEYESIGVSSLITRTTNDA YQIMLFMGNILRLGFMTPVMFIASLYMVMRTSPSLGMYVLGALPFLLLAVVGIARLSEPL SKKQQKNLDGINGILRENLSGLRVIRAFVNEKFEESRFNKVNETYTKSSKSLFRLMAAAQ PGFFFLFNIVMVLIIWSGTVQISHGDLEVGNLIAFIEYIFHALFSFMLFASVFMMYQKVK F >gi|307679043|gb|GL456754.1| GENE 35 36267 - 36743 335 158 aa, chain + ## HITS:1 COG:lin0616 KEGG:ns NR:ns ## COG: lin0616 COG1132 # Protein_GI_number: 16799691 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Listeria innocua # 1 119 390 508 570 159 63.0 2e-39 MNVKEYKLSALRNKIGYIPQKALLFTGTIADNLRYGKEDATLEEMERAIDIAQATEFVSQ KPQGYDEPLSEGGTNFSGGQKQRLAIARAIIRNPEIYIFDDSFSALDYQTDANLRARLKK RNNRIHCFNCGTTCWNNYACGPHCCFKRRRRGRNWHTS >gi|307679043|gb|GL456754.1| GENE 36 36679 - 36813 116 44 aa, chain + ## HITS:1 COG:CAC3282 KEGG:ns NR:ns ## COG: CAC3282 COG1132 # Protein_GI_number: 15896527 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Clostridium acetobutylicum # 1 44 541 584 584 71 70.0 4e-13 MHADRIVVLNEGDVVGIGTHRELLETCPIYYDIAASQLSEEELA >gi|307679043|gb|GL456754.1| GENE 37 36810 - 38579 217 589 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 347 566 132 351 398 88 29 1e-16 MKHAFSSMKRIGRYIKPYRVTFYLVILFTILTVAFNAALPYLTGLPTTEISRNIAAGESI NFDYVIQCLIWILVVGTGYCVAQFLSGFLMTNVVQQSMRDLRRDIEEKINRLPVSYFDKN QQGNILSRVTNDVDAVSNAMQQSFINIVSAVLGIVMAVVMMFLINPLMAIFSVIMIPLSL IISRTIVKISQKYFQGMQNSLGDLNGYVQENMTGFSVLKLYGREKETLEGFKQVNHRLNG FGFKASFISGLMLPLVQMTAYGTYIGVAVLGSYYVVAGVIVVGQLQAFIQYIWQISQPMG NITQLSAALQSASASTMRIFEILDEPEEELNEQDVPLPEPILGSVEFENVSFSYDPEKPL IRNLNFKVDAGQMVAIVGPTGAGKTTLINLLMRFYDVTEGAIKIDGIDTKKMNRSDVRSV FGMVLQDAWLYKGTIADNIRFGKLDATDYEVVDAAKTANVDHFIRTMPDGYEMEINSEGD NVSLGQKQLLTIARAVISDPKILILDEATSSVDTRLEALIQKAMDRVMEGRTSFVIAHRL STIREADLILVMKQGEIIEKGTHHELLEQGGFYEKLYNSQFAEEGDYEE >gi|307679043|gb|GL456754.1| GENE 38 38822 - 39313 455 163 aa, chain + ## HITS:1 COG:CC2643 KEGG:ns NR:ns ## COG: CC2643 COG0663 # Protein_GI_number: 16126878 # Func_class: R General function prediction only # Function: Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily # Organism: Caulobacter vibrioides # 4 154 18 168 176 161 52.0 4e-40 MKKEYFIAASADVYGNVQLAKDSNIWFQSVLRGDSNTITIGEGSNIQDGTIIHVDEDAPT IVGKYVTVGHQCMLHGCKIGDGALIGMGSTILNNAIIGENSLIGAGSLVTEGKIIPPNVL AFGRPAKVIRPLTAAEIASNHTNALHYIQRAEEFRQQKYPKLT >gi|307679043|gb|GL456754.1| GENE 39 39330 - 40478 1367 382 aa, chain + ## HITS:1 COG:BS_yvyH KEGG:ns NR:ns ## COG: BS_yvyH COG0381 # Protein_GI_number: 16080619 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine 2-epimerase # Organism: Bacillus subtilis # 1 382 1 380 380 466 63.0 1e-131 MKKIKVMTVFGTRPEAIKMAPLIKVLEEQSQGFDSVVVVTAQHRQMLDQVLEDFQITPNH DLNIMKDGQTLTDITSRVLNLLTEVLVTEQPDIVLVHGDTTTSFAAALAAFYQQIPVGHV EAGLRTWQKYSPFPEEMNRQLVDVLTDIYFAPTTQSKDNLIKENHPEEHIYVTGNTAIDA MAYTVDAHYQNDLLEKIPTDQRIVLITMHRRENLGLPMANVFKAVRRLVMEHPEIEVIFP MHKNPKVREIVAEHLGELARVHLIEPLDVKDFQNFAAKSALILTDSGGVQEEAPSLGVPV LVLRDTTERPEGVAAGTLKLVGTDEQVVYQEAKTLLTDSDAYHAMAHAQNPYGDGQASRR IVEAIAYEMQKSDKKPDTFTAK >gi|307679043|gb|GL456754.1| GENE 40 40577 - 41230 688 217 aa, chain + ## HITS:1 COG:CAC0418 KEGG:ns NR:ns ## COG: CAC0418 COG0546 # Protein_GI_number: 15893709 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Clostridium acetobutylicum # 1 215 1 214 216 184 44.0 1e-46 MYQTILFDLDGTITDSGSGIMRSILYATEQLGWPAPSEETLRSFIGPPLYESFLHMAPSA EAAQQAVGHYRAYYQRKGMFENHVYPGIPEVLTRLKEAGAKLYIATSKPEEFAKKIITHF DLDRYFTGIYGASMDGHRSKKADVIQYALTEAQLAPTKEAIIMVGDRNHDILGAQQNGLD SIGVLYGFGEETELQEAGATFLVQSPKDLGAILLQNS >gi|307679043|gb|GL456754.1| GENE 41 41438 - 42823 1436 461 aa, chain + ## HITS:1 COG:SPy0348 KEGG:ns NR:ns ## COG: SPy0348 COG1559 # Protein_GI_number: 15674503 # Func_class: R General function prediction only # Function: Predicted periplasmic solute-binding protein # Organism: Streptococcus pyogenes M1 GAS # 48 457 102 521 524 316 43.0 6e-86 MANDNQNNQDPKSSLRDQVTGSLNGRNDGDQPDSSEKNDRSPQPSSDESQETASRTTQTR AGSRAARRRGKDKTTQTVEEPTPIETDEKPTNTKKQTRKKEDRLVGRIVLIVVSVLVLMM AIFGFTFYKYVDAGLQPLDKNNKKLVQVHIPEGSSNKQIAAVLEESNVIKSGMVFNYYVK FKNLTDFQAGYYQMSPSMTLDEIGEMLKEGGTPEPTKIADGKVTIPEGYDIDKIGEAIEK NTDFKKADFIALMKNEDFFNQMKAKYPDLLESAATAEGVRYRLEGYLFPATYDYYKKATL PEFVEQMIAKMNTVMEQYTPTIHAKNLTNQQVLTLASLVEKEGVKEADRKQIAQVFFNRL AADMPIQSDISILYALGEHKETVTYADLEVDSSYNLYKNTGYGPGPLDSPSEESIKAVLN PTPSDYLYFVADISTGKVYFSKTYEEHQVLVNQYVNNSSSE >gi|307679043|gb|GL456754.1| GENE 42 43084 - 43563 793 159 aa, chain + ## HITS:1 COG:lin1531 KEGG:ns NR:ns ## COG: lin1531 COG0782 # Protein_GI_number: 16800599 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Listeria innocua # 3 159 4 160 160 196 73.0 1e-50 MVEKVYPMTLEGKEKLEQELEELKTIKRKEIVERIKIARSFGDLSENSEYESAKDEQAFV EGRITTLENMIRFAEIIDNDGVDQDEVSIGKTVTFQELPDGEEEEYTIVGSAEADPFSGK ISNDSPIAQALIGKQLGDQVIIATPGGDMTVKITKVEAN >gi|307679043|gb|GL456754.1| GENE 43 43714 - 44445 865 243 aa, chain + ## HITS:1 COG:lin1019 KEGG:ns NR:ns ## COG: lin1019 COG4758 # Protein_GI_number: 16800088 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 29 243 30 237 237 145 38.0 5e-35 MNNPWRFFIVAEALLFILALWQIVHNPGLAVLLTIGVLLVAYVSRKASKTHFNNFQFVLG VVFIVIGAMNSTAVWFMLIFGVLFIGLKGFEISGVDIAERAPWRKKQMIMVETAAKEPKN GKRFKRRWFANERIGNNIYEWDDINIDLISGDTIIDLGNTLLPKEDNIIIIRKGFGRTRI LVPLGVAILLEHSTFYGTVRFEEEKYQLKNESLKIYSNDYDTNLRRLKIMTNTLVGDVEV IRV >gi|307679043|gb|GL456754.1| GENE 44 44442 - 45545 937 367 aa, chain + ## HITS:1 COG:lin1020 KEGG:ns NR:ns ## COG: lin1020 COG4585 # Protein_GI_number: 16800089 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 6 362 4 352 352 291 50.0 2e-78 MTDRISRRMISLYASLSTFIVILITLFSYFHSIKQNRWLLELLQRKVFYLPLIVHIVLIS LLIGLLTFLLISLVQKGQYGRIEEKLRLLANGNYESPVLNKPTTSENQDHYLTEVEQDIW SIKNKLLEMSKELQLLNSRPQLMDGQTKEEILENERHRLARELHDSVSQQLFAAMMMLSA LNEQAQRTETPEPYRKQLAMVAEIINASQSEMRALLLHLRPISLEGKSLRKGIEQLLKEL QTKIKIELIWDVEDVHLNSSIEDHLFRIVQELLSNTLRHAKAKELEVYLHQVDKNVLLRI VDDGVGFDMKEQSNKAGSYGLNNIRERVVGMGGTVKIISFKGQGTSVEIKVPVIKEETAS DQSNVSG >gi|307679043|gb|GL456754.1| GENE 45 45520 - 46152 869 210 aa, chain + ## HITS:1 COG:lin1021 KEGG:ns NR:ns ## COG: lin1021 COG2197 # Protein_GI_number: 16800090 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Listeria innocua # 1 210 1 210 212 299 79.0 3e-81 MIKVMLVDDHEMVRLGVSSYLSIQEDIEVVGEAENGKIGYEKALELRPDVILMDLVMEEM DGIDSTKAILKDWPEAKIIIVTSFIDDEKVYPAIEAGAAGYLLKTSTAHEIADAIRATYR GERVLEPEVTHKMMERLTKKQEPVLHEDLTNREHEILMLIAQGKSNQEIADELFITLKTV KTHVSNILAKLDVDDRTQAAIYAFQHGLAK >gi|307679043|gb|GL456754.1| GENE 46 46256 - 46921 890 221 aa, chain + ## HITS:1 COG:lin1022 KEGG:ns NR:ns ## COG: lin1022 COG0569 # Protein_GI_number: 16800091 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transport systems, NAD-binding component # Organism: Listeria innocua # 1 219 1 218 219 269 62.0 3e-72 MKQNFAIIGLGRFGGSICQTLVEAGQEVLAIDSSEDRVNEYMNIATHAVVANAQDEMTLR SLGIRNFDHVVVAIGEDIQASILVTLMVKEMGVPNVLAKAVNEYHARVLDKIGADMVVHP ERDMGIRIAHKLVSRNILDYIELSSEFSLAEVRVTNPKFYNKTLAELNFRQRFGLTVVAI RRSKTEVIASPDASEIVRENDNLLVIGDTADVDLLDEKMNG >gi|307679043|gb|GL456754.1| GENE 47 46994 - 47305 541 103 aa, chain + ## HITS:1 COG:BS_yneR KEGG:ns NR:ns ## COG: BS_yneR COG4841 # Protein_GI_number: 16078867 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 95 1 95 95 76 37.0 1e-14 MKLEVTPKAQQWFKEETGVQPETGIRFFGKIYGKTPVHDGFSIAMSVEAPDEPMIKENLD GITYFIEETDDWFFKGYDLIVDYDEKNDEPRYQFEANQEDLTK >gi|307679043|gb|GL456754.1| GENE 48 47509 - 48447 1059 312 aa, chain + ## HITS:1 COG:SPy0510 KEGG:ns NR:ns ## COG: SPy0510 COG0463 # Protein_GI_number: 15674614 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Streptococcus pyogenes M1 GAS # 1 305 3 306 308 379 59.0 1e-105 MLSIVVPCYNEEAAIPLFFEEVEKISQQLSHSVEYIFVNDGSKDKTLAVLRQLYREHPEK VRYLSFSRNFGKEAGLYAGLKEATGDLVTVMDVDLQDPPELLPQMIEMIETSTDLDCVGT RRITRDGEPPIRSFFARMFYKLINRIAETEMVDGARDFRVMTRQMVDAILELSEYNRFSK GIFSWVGFKTEYIEFKNRERIAGETSWSFWSLLSYSIDGIVNFSETPLNIASYVGAFSCI GSALAMLVIIFRTLVNGDPTSGWPSMVCIVLFVGGLQLLCLGIIGKYIGKIFLETKKRPI YIVKESEKDSKK >gi|307679043|gb|GL456754.1| GENE 49 48657 - 49727 1090 356 aa, chain + ## HITS:1 COG:PH0022 KEGG:ns NR:ns ## COG: PH0022 COG3839 # Protein_GI_number: 14589983 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Pyrococcus horikoshii # 1 354 10 370 373 261 41.0 1e-69 MIEVIDLKKVFDNGFEALKSVNFTIEQGDLVCLLGPSGCGKSTILNLIAGLLHPSDGDIQ FRQQSVVKTAPKDRNIGFVFQNYALYPHMTVLENVMFPLTVGSKKVPKAEAQAIAEEYMK LTNIEELSHKKPGTLSGGQQQRVAITRALVQKPDVLLLDEPLSNLDARLRLKIREEIRRL VKEVGITTIFVTHDQEEALSISDKIILLNEGVIQQNDEPQNLYLEPNNLFVAQFIGNPII NLLSVEVKDGKMYHESFEIPLERFEQARFKMPMTDGKYTFASRPEDVVPTETGLFTTTTD LVELIGRERILRFTLGNEQVKSIVSVEEAIEEGDTLSFDFSYKKVFIFNEAGDRVY >gi|307679043|gb|GL456754.1| GENE 50 49727 - 50602 924 291 aa, chain + ## HITS:1 COG:TM0596 KEGG:ns NR:ns ## COG: TM0596 COG1175 # Protein_GI_number: 15643362 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Thermotoga maritima # 45 288 169 414 420 173 42.0 3e-43 MKKYNPENQPKAWLFLLPSLGIILLFSVYPLFRSLWMSFQKGSLINQRYAGLENYQRVLN DPIFYKALKNTALYAFAVVPIALIISLAIAWIIFEKVKHKSFFETIFFMPYVTSTIAIGI VFRYFFNGDYGIVNYVLGFFGIPSVNWLDNVQMSMPTLIIFGVWTSLAFNIIILLAGLRN IDEEHFKIAKMFGASDGEIFRRITFPQLVPTIAFLLTVNLIGAFKVYTQVYALFGGRAGI ANSATTAVYYIYDKFHIAGRPGIAMAATVILFVIILVVTFLQNKLLKKVGQ >gi|307679043|gb|GL456754.1| GENE 51 50607 - 51425 696 272 aa, chain + ## HITS:1 COG:TM0598 KEGG:ns NR:ns ## COG: TM0598 COG0395 # Protein_GI_number: 15643364 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Thermotoga maritima # 52 271 58 277 277 178 42.0 1e-44 MKKVLTIIAFVFLGILAVITLFPFVYMILAGLMSYSEATSMPPTMFPKQPQWQNYTEVFQ KAPFLRYFLNTVFVSGVTTIATVVTAVLASFALTSLKFRFKNVVIALMISLLMVPYESII FTNYQTIAQLGLLNTYSALIIPFLTSIFYIYYLNGYLKGIPDTFYKAAKIDGASDLEYIW RILVPMSKPALVTVGILTFISSWNSFLWPLLVTNEKKYRLLNNGLSAFATESGSDVHLQM AAATLTVIPILIIYLIFRKEIIRGVAKNGIKG >gi|307679043|gb|GL456754.1| GENE 52 51409 - 52698 1341 429 aa, chain + ## HITS:1 COG:PH0466 KEGG:ns NR:ns ## COG: PH0466 COG0595 # Protein_GI_number: 14590378 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Pyrococcus horikoshii # 9 425 4 510 514 98 26.0 2e-20 MESKAKTTVTFHSGILTIGGTVIEVAYKDAHIFFDFGTEFRPELDLPDDHIETLINNRLV PELKDLYDPRLGYEYHGTEDKEYQHTAVFLSHAHLDHSRMINYLDPAVPLYTLKETKMIL NSLNRKGDFLIPSPFEEKNFTREMIGLNKNDVIKVGEISVEIVPVDHDAYGASALLIRTP DHFITYTGDLRLHGHNREETLAFCEKAKHTELLMMEGVSISFPEREPDPAQIAVVSEEDL VQHLVRLELENPNRQITFNGYPANVERFAKIIEKSPRTVVLEANMAALLLEVFGIEVRYY YAESGKIPELNPALEIPYDTLLKDKTDYLWQVVNQFDNLQEGSLYIHSDAQPLGDFDPQY RVFLDLLAKKDITFVRLACSGHAIPEDLDKIIALIEPQVLVPIHTLKPEKLENPYGERIL PERGEQIVL >gi|307679043|gb|GL456754.1| GENE 53 52722 - 54002 1703 426 aa, chain + ## HITS:1 COG:TM0595 KEGG:ns NR:ns ## COG: TM0595 COG1653 # Protein_GI_number: 15643361 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Thermotoga maritima # 44 415 22 415 419 178 31.0 2e-44 MKFKTLATTVLATAAIFALGACGNGNGAKESNDIVKEVKEDTTITFWHAMNGVQEEALTK LTKDFMKENPKIKVELQNQSAYPDLQAKINSTLTSPKDLPTITQAYPGWLWNAAQDEMLV DLKPYMDDDTIGWKDAEPIREVLLDGAKIDGKQYGIPFNKSTEMLFYNADLLKEYGVEVP KTLEELKEASKTIYEKSNKEVVGAGFDSLNNYYAIGMKNKGVDFNKDLDLTSKDSQEVVD YYRDGIEAGYFRTAGSDKYLSGPFANKKVAMFVGSIAGAGFVQKDAEAGGYEYGVAPRPE KINLQQGTDIYMFDSATPEQRTAAFEFMKFLATPDSQLYWAQQTGYMPILESVLHSDEYK NSKTTKVPAQLENAVKDLFAIPVEENADSAYNEMRTIMESIFASSNKDTRKLLKDATSQF EQAWNQ >gi|307679043|gb|GL456754.1| GENE 54 54100 - 55653 1860 517 aa, chain + ## HITS:1 COG:L99798 KEGG:ns NR:ns ## COG: L99798 COG0737 # Protein_GI_number: 15672285 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Lactococcus lactis # 1 516 1 518 519 618 56.0 1e-177 MQIKILATSDMHGYIMPTSYSEKKMDLPFGTAKAATMLKKLRASAKGPVFQIENGDFIQG SPLSYYVRKAETHSVAAITKIINQMNYDVSILGNHEFNYGLDYLKETIASYQQPVLAANI LGKDGQPYFGQPYVIIEKQGVKVAILGVTTQYIPHWEQPATVKDLTFKSVVETAAEYVPK LREEADLVVVAYHGGFEKDLETGEPTELLTGENEGYDLLEKVPGIDALVTGHQHREIATK LNGIPVIQPGFRGAFVGEITLEIEPMAKGYRVIGSDAAIHPVGNEQPDTEVLALTTALHD EVEEWLDQPVGNVEGDMTIQNPNAVRLKEHPYIEFINNVQMASSGTDISGTALFNNEGKG FNNQITMRDIITNYIYPNTLAVLRVTGQDLREALEQSATYFVLEKGQPIFNPKYVDPKPQ YYNYDMYEGIEYTLDLRQPFGERVTKLNYHGKAVQAEDVLEIVTNQYRAVGGGNYQMFQP EKIIREIQIDMTELIAEYLKKHPIIQASTNDNFKVIW >gi|307679043|gb|GL456754.1| GENE 55 55718 - 56680 975 320 aa, chain - ## HITS:1 COG:BH0949 KEGG:ns NR:ns ## COG: BH0949 COG0111 # Protein_GI_number: 15613512 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Bacillus halodurans # 36 320 35 316 316 196 33.0 4e-50 MNQPIIYLNEVFNEEQLEQVKAVAPNYLVKTSTDHLSSAEEEAIEIMLGWHKEIGPRLLA SDTSHLKWIQLISAGADYMDFDKLREKGILLSNGSGIHSVSISEHVLGVLLAHTRGLQES IQQQMQHTWNQTAPSYQQLSGQKMLIVGTGQIGQQLAKFAKGLNLQVYGVNTSGHVTEGF IECYSQKNMSKIIHEMSIVVNILPLTETTKHLYNQALFEKMAPETIFVNVGRGASVATND LITALNNKTIAFAALDVFEEEPLPEDSPLWEMQNVLLTPHISGMTPKFKSKLLAIFIPNL NQFVTDQTLVKNQVSLKKGY >gi|307679043|gb|GL456754.1| GENE 56 56829 - 57839 963 336 aa, chain - ## HITS:1 COG:lin2489 KEGG:ns NR:ns ## COG: lin2489 COG0492 # Protein_GI_number: 16801551 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Listeria innocua # 1 331 1 331 331 439 61.0 1e-123 MSDEKDIYDLTIIGGGPVGLFAAFYAGIRKAKTKIIDSLPQLGGQLTMLYPEKYIYDIPG FPAIKAGELIANLEKQMQPFQHDVCLEEEVTHLAQEADGLLRLETTKGTHYSKTVIFAIG NGAFQPRRLAIENVEAFEGESIHYYVTDMKKFAGKKVAIAGGGDSAIDWALMLENVAEEV SIIHRRPQFRGHEHSVEQLEKSSVSIRTPYIISDILKENETFTGIQLTETKGDQTLDLPL DDLIINYGFTSSLTHLKEWGLDVSRNAINVHSDMSTNIPGVYAVGDICSYEGKVKLIATG FGEAPTAVNNALHYLRPDARRQPVHSTSLFENGVPK >gi|307679043|gb|GL456754.1| GENE 57 58044 - 58634 911 196 aa, chain + ## HITS:1 COG:lin2475 KEGG:ns NR:ns ## COG: lin2475 COG0652 # Protein_GI_number: 16801537 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Listeria innocua # 4 193 3 193 194 255 67.0 3e-68 MSQFPQLDLENAKGPKAVIKTNRGDITVQLFPEQAPKTVKNFVELAKKGYYDGVIFHRVI PDFMIQGGDPTGTGMGGESIYGEAFEDEFSRDVFNLRGALSMANAGPNTNGSQFFVVTNQ NVPAQMMSQLEDAGFPEEIIEAYKQGGTPWLDFRHTVFGHVVDGMDVVDEIGGVQRDAQD RPTFDVVMDTVEIIGE >gi|307679043|gb|GL456754.1| GENE 58 58799 - 59005 233 68 aa, chain + ## HITS:1 COG:no KEGG:EF2896 NR:ns ## KEGG: EF2896 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 68 1 68 68 118 100.0 9e-26 MLEKYRYPMALALFAVILPFIGTFFTYVDQQGIVHEPGFYTIIIGEILLLFSGIWFVRVY LAKRKRKN >gi|307679043|gb|GL456754.1| GENE 59 59039 - 60205 1140 388 aa, chain - ## HITS:1 COG:BS_patB KEGG:ns NR:ns ## COG: BS_patB COG1168 # Protein_GI_number: 16080196 # Func_class: E Amino acid transport and metabolism # Function: Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities # Organism: Bacillus subtilis # 3 388 2 387 387 353 42.0 3e-97 MFNFNETIDRRHTNCVKWDTVETSYHEKDLLPLWVADMDFKVHQPILDALSQVIEQGILG YAVAPNELYQAIQDWQRQHHQLIVEKEEILFNSGVVPSLATAVQAYTAPADSVMICDPVY PPFADVVKQNERRLVRHSLLEVNGHYEVDLVKMEQQIIEEKVKLLLFCNPHNPGGRVWTK EELLAIGRLCQKHQVTVVSDEIHQDLIFKPHTFTSFTVADEAFKEFTVTLTAATKTFNLA GIKNSMLFIPNEKLRQSFVSLQDKNHQGGINTFGYVGTAAAYQTGEEWLTALLDYLKENI DFALSFFREELPSVRVMEPEGTYLLWLDFSSYSLTDRELRDTLIHKGKVVLNPGISFGPQ GSQHMRLNLACSKETLEEGLLRIKKAFN >gi|307679043|gb|GL456754.1| GENE 60 60371 - 60757 187 128 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|86608329|ref|YP_477091.1| putative ribosomal protein S1 [Synechococcus sp. JA-2-3B'a(2-13)] # 1 106 186 291 304 76 34 3e-13 MKRGNLMKYKIGMVLSGTITGLQPYGAFVSLDEETQGLIHVSEVQAGFTKNIHGLLTVGQ KVTVQVIDVDEYSQKISLSLRTLEDKVHSVNHRRKKYFTDKNKKIGFATLDKELPEWIDE AMDKLLEK >gi|307679043|gb|GL456754.1| GENE 61 60831 - 61193 361 120 aa, chain + ## HITS:1 COG:no KEGG:EF2893 NR:ns ## KEGG: EF2893 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 120 1 120 120 224 100.0 7e-58 MSNKKVAGTIILNLNDGSKKFLMHPIGEAIEFAMAKVSDEMTGLASMLQWFKEEVQLDVT SISLVELTNAHINKENVPLFVFEMDEQALKNEMDKDYTWVAPAELKTIWSKYHIEGVPMF >gi|307679043|gb|GL456754.1| GENE 62 61275 - 61433 79 52 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256618321|ref|ZP_05475167.1| ## NR: gi|256618321|ref|ZP_05475167.1| predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis ATCC 4200] # 1 52 2 53 53 62 100.0 8e-09 MFGQHFFSKKLKEVFNLFSFFSIISFLNFLNPNCLSKQFNSLLKIEQFESYI Prediction of potential genes in microbial genomes Time: Tue Jul 5 18:13:24 2011 Seq name: gi|307679042|gb|GL456755.1| Enterococcus faecalis TX0312 genomic scaffold Scfld10, whole genome shotgun sequence Length of sequence - 19262 bp Number of predicted genes - 19, with homology - 19 Number of transcription units - 12, operones - 6 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 2/0.000 - CDS 3 - 114 192 ## COG1087 UDP-glucose 4-epimerase 2 1 Op 2 . - CDS 130 - 1293 1450 ## COG0153 Galactokinase - Prom 1467 - 1526 5.7 + Prom 1281 - 1340 6.1 3 2 Tu 1 . + CDS 1513 - 2550 470 ## PROTEIN SUPPORTED gi|15900011|ref|NP_344615.1| aldose 1-epimerase + Term 2561 - 2625 11.3 + Prom 2600 - 2659 4.2 4 3 Tu 1 . + CDS 2681 - 2827 221 ## EF1067 hypothetical protein + Term 2831 - 2891 11.7 + Prom 2868 - 2927 6.5 5 4 Tu 1 . + CDS 2948 - 3586 674 ## COG0110 Acetyltransferase (isoleucine patch superfamily) + Term 3591 - 3634 1.6 - Term 3578 - 3622 6.1 6 5 Op 1 . - CDS 3628 - 4050 500 ## COG2764 Uncharacterized protein conserved in bacteria 7 5 Op 2 . - CDS 4126 - 4605 465 ## PROTEIN SUPPORTED gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 - Prom 4627 - 4686 4.6 8 6 Op 1 1/0.000 - CDS 4840 - 6057 1339 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 9 6 Op 2 . - CDS 6054 - 7277 1126 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 10 6 Op 3 . - CDS 7305 - 8966 1885 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 9084 - 9143 6.7 + Prom 9256 - 9315 6.9 11 7 Tu 1 . + CDS 9347 - 11017 1740 ## COG2508 Regulator of polyketide synthase expression + Term 11022 - 11062 2.1 - Term 10999 - 11058 10.0 12 8 Op 1 . - CDS 11072 - 11497 675 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins 13 8 Op 2 . - CDS 11497 - 13095 1681 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family - Prom 13175 - 13234 7.9 - Term 13312 - 13352 4.1 14 9 Op 1 . - CDS 13364 - 13876 455 ## EF1055 tunicamycin resistance protein, putative 15 9 Op 2 . - CDS 13926 - 14495 494 ## ABC1394 hypothetical protein - Prom 14644 - 14703 5.1 + Prom 14794 - 14853 5.1 16 10 Op 1 6/0.000 + CDS 14960 - 16717 1189 ## COG4986 ABC-type anion transport system, duplicated permease component 17 10 Op 2 . + CDS 16776 - 17585 319 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Prom 17592 - 17651 4.5 18 11 Tu 1 . + CDS 17880 - 18140 268 ## gi|227552836|ref|ZP_03982885.1| hypothetical protein HMPREF0346_0001 - TRNA 18158 - 18241 62.3 # Leu CAA 0 0 - TRNA 18255 - 18325 71.3 # Cys GCA 0 0 - TRNA 18351 - 18422 67.6 # Gln TTG 0 0 - TRNA 18437 - 18509 65.0 # His GTG 0 0 + Prom 18377 - 18436 3.5 19 12 Tu 1 . + CDS 18545 - 18817 85 ## gi|47092471|ref|ZP_00230261.1| hypothetical protein LMOh7858_2508 - TRNA 18546 - 18619 68.8 # Trp CCA 0 0 - TRNA 18624 - 18704 72.8 # Tyr GTA 0 0 - TRNA 18710 - 18782 75.3 # Phe GAA 0 0 - TRNA 18828 - 18903 75.5 # Asp GTC 0 0 - TRNA 18914 - 18986 88.0 # Val TAC 0 0 - 5S_RRNA 18926 - 18982 92.0 # AF302131 [D:490..741] # 5S ribosomal RNA # Streptococcus agalactiae # Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus. - TRNA 19014 - 19085 70.2 # Glu TTC 0 0 - TRNA 19103 - 19191 53.0 # Ser GGA 0 0 Predicted protein(s) >gi|307679042|gb|GL456755.1| GENE 1 3 - 114 192 37 aa, chain - ## HITS:1 COG:lin2620 KEGG:ns NR:ns ## COG: lin2620 COG1087 # Protein_GI_number: 16801682 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Listeria innocua # 1 37 2 38 328 65 81.0 2e-11 MSILVLGGAGYIGSHAVDQLISKGYAVIVVDNLLTGH >gi|307679042|gb|GL456755.1| GENE 2 130 - 1293 1450 387 aa, chain - ## HITS:1 COG:SP1853 KEGG:ns NR:ns ## COG: SP1853 COG0153 # Protein_GI_number: 15901681 # Func_class: G Carbohydrate transport and metabolism # Function: Galactokinase # Organism: Streptococcus pneumoniae TIGR4 # 3 386 8 391 392 459 61.0 1e-129 MEELLMNRFVEIFGEKGTACYFAPGRINLIGEHTDYNGGHVFPAAITLGTFGVARKRDDQ KIRMFSDNFKEVGLIEFSLEDLTYSDSDDWANYPKGVLNYLIESGHNIDSGIDVLFYGTI PNGAGLSSSASIELLMGTICNDLYALHCPMLELVQIGKKVENEFIGVNSGIMDQFAVGMG EKDQAILLDTNNMHYEMVPAKLGEYTIVIMNTNKRRELADSKYNERRAECEEAVRLLQKE LSIEFLGELDSETFEQYQALIGDPTLIKRARHAVTENERTLLAKQALTEGDLEEFGLLLN ASHRSLKEDYEVTGIELDTLVACAQEQPGVLGARMTGAGFGGCSIALVPKQNIDAFIEAV GQSYQDKIGYAADFYPASIDDGARKLF >gi|307679042|gb|GL456755.1| GENE 3 1513 - 2550 470 345 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900011|ref|NP_344615.1| aldose 1-epimerase [Streptococcus pneumoniae TIGR4] # 9 344 14 343 345 185 32 2e-46 MTISTESFGQGMLLYTLTNKNGVTLKATDFGARIVALDVPLTKNESRSLVLGFPSADEYL SKDLYFGATIGRTAGRIADGSFELAGKKYQTMINTPTQTTLHGGTPGFESKKWHSEIQEA QANPSVKFWLESPAGENGFPGNLTVSVTYTLTEENEWQIEYQATTDEQTLFNPTNHVYFN LTGNPTIPIDAHELQINAQKFVPLDERVLPLGELASVDQTAFDLQKPKKLAEVFSSTDEQ IQKMNGFDHPFILTNHDLINPDVILKSPTKDITLEMFTDQPSVVIFSANFADNGPDIQGQ KLVNHGALTFETQVCPGAERFPLFGSITLSPEQEFHSTTRFKLIY >gi|307679042|gb|GL456755.1| GENE 4 2681 - 2827 221 48 aa, chain + ## HITS:1 COG:no KEGG:EF1067 NR:ns ## KEGG: EF1067 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 48 20 67 67 91 100.0 1e-17 MYAIKFFHGYLTADGKRTRDKSGCLVYHSEKEAQKLADKIGGRVKKIG >gi|307679042|gb|GL456755.1| GENE 5 2948 - 3586 674 212 aa, chain + ## HITS:1 COG:L1734467 KEGG:ns NR:ns ## COG: L1734467 COG0110 # Protein_GI_number: 15673662 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Lactococcus lactis # 1 195 1 193 203 212 50.0 4e-55 MKQNDFDYMQMLKGELYYAPTILPENKSTKGKVLAQKINQLPIDNVKEIVALEKELLGKT GNELYITPPLHVDYGRHIEVGENFYANMDCIFLDVNKIIFGDNVMVGPRASFYTAGHPID PTIRTAELEFGTPIIVEDNVWIGGSATILPGVTIGKNAIVAAGAVVTKDVPANTIVGGNP AKVIRKIDENDQQFWTEKQRQYQIAKKQFFHE >gi|307679042|gb|GL456755.1| GENE 6 3628 - 4050 500 140 aa, chain - ## HITS:1 COG:lin1207 KEGG:ns NR:ns ## COG: lin1207 COG2764 # Protein_GI_number: 16800276 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 2 135 3 133 135 142 50.0 2e-34 MLELYINFKGEAKEAIAFYEDVFDTKCQNLMTFGEAPEDPEHPINDEIKDLVMNASIIIE GTYVMISDVPDMFGFEVTEGNNLSLVVSTDDDEKIDRLFKRLSEGGTVTMPLSETFWSKK YGSLKDQFGIHWMFNYYEED >gi|307679042|gb|GL456755.1| GENE 7 4126 - 4605 465 159 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 [Streptococcus pneumoniae R6] # 6 157 3 154 165 183 59 7e-46 MTEQTRENKKAAYELCLQQLSGLLEIETDAIANLANSSALIAQTLPDTVFAGYYLYKDEE LVLGPFQGKVSCTRIKMGKGVCGESAEKQATLIVDNVKTHANYISCDSAAMSEIVVPMVK NHQLVGVLDIDSGVTNSYDAVDQLYLEKFVTLLLEKSDF >gi|307679042|gb|GL456755.1| GENE 8 4840 - 6057 1339 405 aa, chain - ## HITS:1 COG:yahJ KEGG:ns NR:ns ## COG: yahJ COG0402 # Protein_GI_number: 16128309 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Escherichia coli K12 # 7 405 55 454 460 231 34.0 1e-60 MTASIVYLNNVRLETGFAKDHHELTYTKTARYTLAIQEGKIQAIIPQNQVTEKQQGTDLN GQLAIPAFQESHNHLDKTYLSLGWRASQPVKNLKERLADEASELKLLAPSTEQRATAMIE KLIGYGASYIRTHVNIDPYVELENFWGVKRALEKYAHVIDYDIVVFPQHGLLKNPQTVLL MREALKNGGTMVGGLDPAGIDYAIEESLETIFDLAEEFQVGIDIHLHDTGEVGVYTIDRF LDILEERKFTQRTAISHAFALLDVRPAEKEKLYQRLATHQTAIMSTIPYDPRYLLPPIDV LRQTGVSVHLGSDGFFDSWSSNVSGDLFEKLRNFCEMTGKITEEQLTQAYVHGCGKEAPF SFEEERLWFTEGDEANFIFTEAASTAEVIARKPQKRQIMLKGQWV >gi|307679042|gb|GL456755.1| GENE 9 6054 - 7277 1126 407 aa, chain - ## HITS:1 COG:ECs0373 KEGG:ns NR:ns ## COG: ECs0373 COG0402 # Protein_GI_number: 15829627 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Escherichia coli O157:H7 # 3 398 56 454 460 289 40.0 6e-78 MLLKNCKLETGFSTVNQRIVATETASYDIRIENEVCTAVAPQLRSLENETVIDVNQQLVL PALREMHIHIDKTYFGGPWKACRPLTKGILTRIEEETWLLPEQLPTSLERACQVIEQYIQ QGHYHIRSHCNVDPSIGTKHIEITKEAFSRYEQYITHEIVAFPQHGLLRSQVEPLMREAL RMGATHVGGVDPALVDRHVDHSIAKIFELATTFNKKIDVHLHARDTLGLYEFNKFVDYTE QAKMFGKVTLSHALALGSLEEAAIRDIAQKFSETGIDLTSTVPIGMPTMPIPTLVEQGVK ISVAHDSLTDHWSPFGSGNTIEKLNTAAQRFKISDEYRLNRLWGLASNFVTPLDPNGQRV WPNVGDSADFLLFNAESTAHVIARQQPIQQLILKGQLVEAVQKGEKE >gi|307679042|gb|GL456755.1| GENE 10 7305 - 8966 1885 553 aa, chain - ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 18 552 22 557 559 399 39.0 1e-110 MKKLKMLGCVGLLLALTACQAGTGNSADSNKVAEQKIAISSEAAISTMEPHTAGDTTSTL VMNQVYEGLYVLGKEDELELGVAAEEPAISEDETVYTFKIREDAKWSNDDPVTANDFVYA WQQVASPKSGSIHQALFFDVIKNAKEIALEGADVNTLGVKALDDKTLEITLERPTPYLKS LLSFPVLFPQNEKYIKEQGDKYATDAEHLIYNGSFKLKEWDNASSDDWTYEKNDTYWDAE KVKLTEAKVSVIKSPTTAVNLFDSNELDVVNKLSGEFIPGYVDNPAFLSIPQFVTYFLKM NSVRDGKENPALANNNIRKALAQAFDKESFVKEVLQDQSTATDQVIPPGQTIAPDGTDFT KLAAKKNNYLTYDTAKAKEFWEKGKKEIGLDKIKLEFLTDDTDSAKKAAEFFQFQLEENL DGLEVNVTQVPFTIRVDRDQTRDYDLELSGWGTDYRDPLTVMRIFTSDSTLGGVTFKSDT YDQLIQETRTTHAADQEARLNDFAQAQDILVNQETVLAPIYNRSISVLANQKIKDLYWHS FGPTYSLKWAYVN >gi|307679042|gb|GL456755.1| GENE 11 9347 - 11017 1740 556 aa, chain + ## HITS:1 COG:BS_yunI KEGG:ns NR:ns ## COG: BS_yunI COG2508 # Protein_GI_number: 16080295 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Bacillus subtilis # 2 552 1 528 531 149 22.0 2e-35 MMTVNDLLHAEELPGLTLLTHETNLDAPILQANILENPDAFDWLTPGEILLTTGYIFKDQ PCLQKRLIQELANMNCAALGFKVQRYFNEVPQEMIQLANDVGLPILSIPYNYNFSQIISL VNRRVNQPDETISQHSVHMHNKFYTIIKAGGKSTQLLEVLSAAIQAPVMLLDERFQIMNH FDLPDAPTRITSILNNATLKKQFETALKAQNNELLLFYKEPLTVEFSLANHQLSLRILPI KKKNLSLSYLVIWQTTKKLQTIDLLSVEVCAHYLLPQLQLESSENLTTRQKIGALFQDLI QEKNTNPQAWQEFSNYLQLNEKDTFSLLLVAIEQLEQLFNPTIQMNSIGHQLNHILEGYR QKITAFPTQTGFILLLENPAQEEATYLAQTTHLAKNLLEQLMKLNPKLSFKLAIGPTVKK ITNLCDSYKLAQETFHLAQASQELQQRTILNYDDLFFYRLMIETLTKQAKQKIYQRLIEP LEKEDQKHESSLLETINTYFQSNKNISLTATNMYVHRNTIIYRLKKIEEILHLTLEFPDS SLQLSLAVYLYKQKLL >gi|307679042|gb|GL456755.1| GENE 12 11072 - 11497 675 141 aa, chain - ## HITS:1 COG:L103195 KEGG:ns NR:ns ## COG: L103195 COG0589 # Protein_GI_number: 15674218 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Lactococcus lactis # 2 141 4 144 145 64 26.0 5e-11 MKFSKIMVGVEESPDALKAFHYAIQKAKEEQAELVIVSILEEKEINVYQSLDKNYWQEQL AKLEKQTEKYQQEALANGIDKVSVIVNEGNPGELIINKLIPLNKPDLLIIGSKSTSKLKS FFGSQAAYMARYAPISVMIIR >gi|307679042|gb|GL456755.1| GENE 13 11497 - 13095 1681 532 aa, chain - ## HITS:1 COG:L91569 KEGG:ns NR:ns ## COG: L91569 COG1914 # Protein_GI_number: 15673064 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Lactococcus lactis # 3 310 2 306 314 447 77.0 1e-125 MKNSEEHEPKQRHHLIEYANGPSLEEINGTIDVPKNMSFWKTLFAYSGPGALVAVGYMDP GNWSTSITGGQNFQYLLMSIILISSLIAMLLQYMAAKLGIVSQMDLAQAIRARTSKTLGI VLWILTELAIMATDIAEVIGGAIALYLLFHIPLGLAVFITVFDVLLLLLLTKIGFRKIEA IVVALIVVIFVIFAYQVALSNPVWGDVIKGLVPSAEAFSTSHAVNGQTPLTGALGIIGAT VMPHNLYLHSSVVQSRKIDRKDKTDIQRALRFSTWDSNIQLTMAFFVNSLLLIMGVAVFK SGSVKDPSFFGLFDALSNPAVMSNSILAHIAGSGILSILFAVALLASGQNSTITGTLTGQ IIMEGFIHMRVPIWLRRMVTRLLSVIPVLICVLMTSGKSTVEEHIAINNLMNNSQVFLAF ALPFSMLPLLMFTDSRVEMGEHFKNSWLIKLLGWVSVIGLIYLNMKGLPDQIEGFFGDNP TASQITLADNIAYVIIALVILLLVWTVVELYKGDKRYAQQLAAMEQQVEEVK >gi|307679042|gb|GL456755.1| GENE 14 13364 - 13876 455 170 aa, chain - ## HITS:1 COG:no KEGG:EF1055 NR:ns ## KEGG: EF1055 # Name: not_defined # Def: tunicamycin resistance protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 170 1 170 170 326 98.0 2e-88 MIIWLNGAFGARKTIIAHELQQKLPNAIIYDPEIIGSALMELVPEEMKENDFQEYQEWRC WNAHLLKRMSKESGRPIIVPMTLYKNEYEEELIGYLRRAGIDVYHFLLAVEKEEILQRLL KRNDGTFEWGKNKLPEVLEGFRQIQFTEIFRNHSADTTEIVATILNRITE >gi|307679042|gb|GL456755.1| GENE 15 13926 - 14495 494 189 aa, chain - ## HITS:1 COG:no KEGG:ABC1394 NR:ns ## KEGG: ABC1394 # Name: not_defined # Def: hypothetical protein # Organism: B.clausii # Pathway: not_defined # 10 186 1 172 174 144 44.0 2e-33 MDKILGGSVLKTKVIVISGVTASGKTTLINALSDTVENAYVLSFDDYSIDALPSAPSHAF LLKNFNVAVNLFDITQLMKDFFSVNAQGKFNYIFIDFPFGYLHDDLKPFIDIVIYLKTPL DVCFARQVIRDYSYSQGESIIKWAHNYLNNVRPLFIEHEKNVSVSSDYLLDGTHSVDEQI QKLKKLKVI >gi|307679042|gb|GL456755.1| GENE 16 14960 - 16717 1189 585 aa, chain + ## HITS:1 COG:XF0411 KEGG:ns NR:ns ## COG: XF0411 COG4986 # Protein_GI_number: 15837013 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type anion transport system, duplicated permease component # Organism: Xylella fastidiosa 9a5c # 64 583 62 581 584 300 35.0 5e-81 MKAVTASSKKNTLLAKSIGNLTLLIILGIFIFIIVFSWLKMNRPLHTLPSEEFLATPSKT DDFLSPSNLFYFSIRTMFRMIVGMAWSFLFSFVFGILAVKYKTARRVILPLVNFLESVPL LGFLTFTTAWLLGLFPGNVMGAEAVAIFAIFTGQAWNIMLTLYQIMEVIPSDLVNVTDQF KYNAWEKFWRLEFVYSIPGLLWNVIISQTAAWFALVASEQASVAFPKETNLYLPGIGSYI QVALNRADFKSCLWAVFALLINVVILNFLVFQPLVRATYYFKYETDVESTTPPKSIIYHL LKKATLTKYFSKAFVKFSHFWIYDLPKVWYFFKLDYLYRLLAKLRHFFKTLWYVSLTIIG VYCSIKLYHFLPHQDFSMIPRLTLYTTLRVTLAMVVAGIIFTPLAIWVANDNRRLSIVQP IGQILGSIPSNVYTPFIVLIISMGFNKLEWWILPLIMVGCQWYFFFNVIAGYLAIPDDIR DVTKLFKLSKWQWWTKFLIPSILPYLITAIINAAGAAWNADIAAESIQWGKKSIDVTGLG QYIAANDGVKDKSALGTLAMCFVVGLCIAFVWQPLYRAAKQKFHY >gi|307679042|gb|GL456755.1| GENE 17 16776 - 17585 319 269 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 16 227 1 212 245 127 34 6e-29 MISLDLSNKTMENKELLSIKSVYKEFEIEGHSEHLKVLENIDLTVKTNEFLSIIGQSGTG KSTLLRSIAGLLRTTRGEITFEDKIINEPDANIGMVFQHFALFPWLTVEKNISFGLENRK EISREQINKRVSNLIEMIGLTGFEKAYPRELSGGMKQRVGFARALAIEPSLLLLDEPFSA LDIITASQLSNDLLEIWLNNQIATKSIVMITHDVQQAVQLSDRVVLMDANPGRIAKIYSI DIPRNQRSPKTTIDIVEQITEEMVRRIHL >gi|307679042|gb|GL456755.1| GENE 18 17880 - 18140 268 86 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227552836|ref|ZP_03982885.1| ## NR: gi|227552836|ref|ZP_03982885.1| hypothetical protein HMPREF0346_0001 [Enterococcus faecalis HH22] hypothetical protein HMPREF0345_2666 [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis HIP11704] hypothetical protein HMPREF9514_01067 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9521_00799 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9504_02039 [Enterococcus faecalis TX0102] hypothetical protein HMPREF0346_0001 [Enterococcus faecalis HH22] hypothetical protein HMPREF0345_2666 [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis HIP11704] hypothetical protein HMPREF9521_00799 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9514_01067 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9504_02039 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9502_00959 [Enterococcus faecalis TX0031] hypothetical protein HMPREF9503_00983 [Enterococcus faecalis TX0043] hypothetical protein HMPREF9508_00136 [Enterococcus faecalis TX0312] hypothetical protein HMPREF9517_00249 [Enterococcus faecalis TX1341] hypothetical protein HMPREF9507_00951 [Enterococcus faecalis TX0309B] hypothetical protein HMPREF9506_02033 [Enterococcus faecalis TX0309A] # 1 86 1 86 86 150 100.0 4e-35 MTTMLAIIGTVAIITVQVIEYNMTEIHIPTAGTFNDDDAEPPHSSVTLVFIRTILITLSL NFPSHFFEMVFLCIRENNKQKRLLNQ >gi|307679042|gb|GL456755.1| GENE 19 18545 - 18817 85 90 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|47092471|ref|ZP_00230261.1| ## NR: gi|47092471|ref|ZP_00230261.1| hypothetical protein LMOh7858_2508 [Listeria monocytogenes str. 4b H7858] hypothetical protein LMOh7858_2508 [Listeria monocytogenes str. 4b H7858] # 1 58 1 60 120 75 75.0 1e-12 MAGAAGIEPTPTVLETVVLPLNYAPKMEESGFEPLNPKERIYSPSRLATSLFLHKWRETE SNCRHTELQSVALPTELPRLKQKLVQIIFK Prediction of potential genes in microbial genomes Time: Tue Jul 5 18:14:01 2011 Seq name: gi|307679041|gb|GL456756.1| Enterococcus faecalis TX0312 genomic scaffold Scfld11, whole genome shotgun sequence Length of sequence - 52839 bp Number of predicted genes - 46, with homology - 46 Number of transcription units - 25, operones - 11 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 312 292 ## EF3023 polysaccharide lyase family protein 8 + Term 340 - 390 8.5 - Term 325 - 381 16.3 2 2 Tu 1 . - CDS 383 - 1771 1696 ## COG1301 Na+/H+-dicarboxylate symporters - Prom 1925 - 1984 5.4 3 3 Tu 1 . + CDS 2119 - 2628 690 ## EF3021 hypothetical protein + Term 2649 - 2683 4.0 + Prom 2655 - 2714 6.1 4 4 Op 1 . + CDS 2766 - 3230 519 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 5 4 Op 2 . + CDS 3233 - 4159 856 ## EF3019 hypothetical protein + Term 4251 - 4293 7.0 + Prom 4184 - 4243 5.9 6 5 Tu 1 . + CDS 4311 - 6092 2141 ## EF3018 hypothetical protein + Term 6099 - 6136 7.3 + Prom 6118 - 6177 2.8 7 6 Op 1 . + CDS 6204 - 6944 741 ## COG0101 Pseudouridylate synthase 8 6 Op 2 . + CDS 6968 - 7927 785 ## COG1715 Restriction endonuclease + Prom 7935 - 7994 5.3 9 7 Tu 1 . + CDS 8043 - 8426 342 ## COG1226 Kef-type K+ transport systems, predicted NAD-binding component + Term 8449 - 8496 11.3 + Prom 8463 - 8522 8.9 10 8 Tu 1 . + CDS 8555 - 9817 1437 ## COG3633 Na+/serine symporter + Term 9820 - 9869 16.2 + Prom 9883 - 9942 2.7 11 9 Tu 1 . + CDS 9967 - 12519 2385 ## COG0474 Cation transport ATPase + Term 12542 - 12585 6.7 - Term 12487 - 12519 2.0 12 10 Tu 1 . - CDS 12525 - 13973 1200 ## EF3013 hypothetical protein - Prom 13997 - 14056 3.7 - Term 14021 - 14054 4.0 13 11 Op 1 . - CDS 14065 - 15246 988 ## EF3012 hypothetical protein 14 11 Op 2 . - CDS 15289 - 16713 1659 ## EF3011 hypothetical protein 15 11 Op 3 . - CDS 16700 - 18259 1995 ## COG0074 Succinyl-CoA synthetase, alpha subunit 16 11 Op 4 . - CDS 18237 - 19103 548 ## EF3009 hypothetical protein - Prom 19135 - 19194 4.6 17 12 Tu 1 . + CDS 19234 - 20889 1280 ## COG2508 Regulator of polyketide synthase expression + Prom 20942 - 21001 7.7 18 13 Op 1 . + CDS 21112 - 22305 778 ## EF3007 hypothetical protein 19 13 Op 2 . + CDS 22330 - 22986 583 ## EF3006 hypothetical protein + Term 22988 - 23048 18.1 - Term 22976 - 23032 18.1 20 14 Tu 1 . - CDS 23038 - 24105 1132 ## COG3049 Penicillin V acylase and related amidases - Prom 24338 - 24397 7.4 21 15 Tu 1 . + CDS 24383 - 25942 1403 ## COG0659 Sulfate permease and related transporters (MFS superfamily) + Term 26042 - 26114 22.1 - Term 26038 - 26092 15.1 22 16 Tu 1 . - CDS 26106 - 26798 624 ## EF3003 putative lipoprotein - Prom 26820 - 26879 14.4 + Prom 26796 - 26855 13.2 23 17 Op 1 2/0.200 + CDS 26991 - 27443 576 ## COG1846 Transcriptional regulators 24 17 Op 2 . + CDS 27462 - 27974 609 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 27987 - 28038 12.2 + Prom 28320 - 28379 6.5 25 18 Op 1 2/0.200 + CDS 28569 - 30065 1567 ## COG1953 Cytosine/uracil/thiamine/allantoin permeases 26 18 Op 2 4/0.000 + CDS 30066 - 31430 1620 ## COG0044 Dihydroorotase and related cyclic amidohydrolases + Prom 31530 - 31589 6.1 27 18 Op 3 4/0.000 + CDS 31612 - 32835 1433 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 28 18 Op 4 . + CDS 32857 - 33642 1047 ## COG3257 Uncharacterized protein, possibly involved in glyoxylate utilization 29 19 Tu 1 . - CDS 33760 - 35385 1410 ## COG2508 Regulator of polyketide synthase expression - Prom 35411 - 35470 6.6 + Prom 35358 - 35417 9.9 30 20 Op 1 . + CDS 35557 - 36765 1329 ## COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase + Term 36780 - 36826 5.3 31 20 Op 2 . + CDS 36863 - 38122 1513 ## COG0477 Permeases of the major facilitator superfamily + Term 38128 - 38177 10.0 - Term 38114 - 38165 11.2 32 21 Tu 1 . - CDS 38168 - 38428 385 ## COG1937 Uncharacterized protein conserved in bacteria - Prom 38455 - 38514 5.8 + Prom 38509 - 38568 5.0 33 22 Op 1 3/0.000 + CDS 38597 - 38911 441 ## COG0607 Rhodanese-related sulfurtransferase 34 22 Op 2 3/0.000 + CDS 38912 - 40561 2383 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases 35 22 Op 3 . + CDS 40554 - 40853 463 ## COG0607 Rhodanese-related sulfurtransferase + Term 40866 - 40906 5.1 + Prom 40925 - 40984 10.0 36 23 Op 1 24/0.000 + CDS 41025 - 42191 1550 ## COG0845 Membrane-fusion protein 37 23 Op 2 36/0.000 + CDS 42184 - 42858 353 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 38 23 Op 3 . + CDS 42855 - 44063 1318 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Term 44078 - 44113 4.4 + Prom 44321 - 44380 7.4 39 24 Op 1 . + CDS 44444 - 45109 483 ## EF2984 transcriptional regulator, putative + Prom 45123 - 45182 3.1 40 24 Op 2 . + CDS 45206 - 46654 1526 ## COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases 41 24 Op 3 . + CDS 46720 - 47247 501 ## COG0406 Fructose-2,6-bisphosphatase + Term 47251 - 47294 9.6 + Prom 47277 - 47336 8.6 42 25 Op 1 3/0.000 + CDS 47369 - 50182 2128 ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain 43 25 Op 2 9/0.000 + CDS 50254 - 50655 450 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 44 25 Op 3 13/0.000 + CDS 50675 - 51169 639 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 45 25 Op 4 13/0.000 + CDS 51193 - 51942 1070 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 46 25 Op 5 . + CDS 51942 - 52793 1107 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID Predicted protein(s) >gi|307679041|gb|GL456756.1| GENE 1 1 - 312 292 103 aa, chain + ## HITS:1 COG:no KEGG:EF3023 NR:ns ## KEGG: EF3023 # Name: not_defined # Def: polysaccharide lyase family protein 8 # Organism: E.faecalis # Pathway: not_defined # 1 103 1270 1372 1372 181 96.0 1e-44 TQAEVDQAEAELRLAVKQLTLKNSGENKKEQKNGGNNGHLNTSTGVDQTGTKQVKPSSQG GFRKASQFLPSTGEKKSIALVIIGLLAIASGCLLVFRKSKSKK >gi|307679041|gb|GL456756.1| GENE 2 383 - 1771 1696 462 aa, chain - ## HITS:1 COG:BH3820 KEGG:ns NR:ns ## COG: BH3820 COG1301 # Protein_GI_number: 15616382 # Func_class: C Energy production and conversion # Function: Na+/H+-dicarboxylate symporters # Organism: Bacillus halodurans # 11 441 1 399 413 176 32.0 1e-43 MEKKKREVKGISFTKKMVISLVGGLIVGLGFLFLREHLIRSNQGAVWQTINQILFQDISD PEKGQSAIGLFYIIGQLFINGLQLVIVPMVFTSITLAICHITDTQKLGRISYKTIFGFLS MSLIALLTAGIVGYSVYLTGAFNVSLSETLAPVEVSTSGNPLMVIVNAVTKNIGSAFSDN GAILAVVVLAVITGLCINALGDKIRVFKKLIEEVNAMVTLFLTFVITKFAPIAVFMLLVR TFASYGIDYLKPALVYVVTTTATLLAFLMIGYPLFILFATKLNPVPFIKKIMKVVVFGFS TSSSAATLPLNTKTTVEELGVDSDVAAFVLPLGMTINMNGTAIMQVIAAIFVAGVAGYEV TPANIALIAILALMSSIGTPAAPGAGGIILFTILTGLNYNNEIAIATYSLILAINRPIEM LVTSLNVVGDSATAIYVAHSEDLLDEATYLTDVADLQNAEAE >gi|307679041|gb|GL456756.1| GENE 3 2119 - 2628 690 169 aa, chain + ## HITS:1 COG:no KEGG:EF3021 NR:ns ## KEGG: EF3021 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 169 1 169 169 291 98.0 7e-78 MKATQLSSETLDRAHERFEETLAQMTVAEANTMPAPLIKSVTWLMWHTARELDLQISALN HSEPLWLSQHWTEKFALDLPDETEDWHHTPEEAAKVVVAEKQLLSDYLAASVALTKSYLD QIKEEQLSDVIDKNWTPPVTRQVRLVSAIDDAVMHSGQAVYTRRLVIGK >gi|307679041|gb|GL456756.1| GENE 4 2766 - 3230 519 154 aa, chain + ## HITS:1 COG:L0142 KEGG:ns NR:ns ## COG: L0142 COG1595 # Protein_GI_number: 15674148 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Lactococcus lactis # 17 154 17 156 164 60 31.0 1e-09 MKKEANFDEVLFSLGQEVIQVLIRRGASLEDAQDAVSQTYTTIFSILPEITSENLRPWFF RVTFNYYITMYRKKKRERTFVANSHPVQSIEKMEGQELLLLIDSLKDEEQELVLLKYYYQ LSYAEIALILELSVENVRKKLYRTRQKLKKELEE >gi|307679041|gb|GL456756.1| GENE 5 3233 - 4159 856 308 aa, chain + ## HITS:1 COG:no KEGG:EF3019 NR:ns ## KEGG: EF3019 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 308 1 308 308 587 99.0 1e-166 MDLKKSIRKAKRKQFIVIGAITVVSFAVLFVGFFVGMDKFSTKNYHTLLEVINDQEMIAS PNTQLDSQVIANSSPFGGEVVTNRSKNIDGYTVEWSNLRSRYSFFRNSIDWNEVYPGSYY SSKNFYEYNRQTKQKVASFYNPAITNYYGGIKNELSELDKMENQVAEVAISFDKPYPYEE VRKMLPSNVNLVWLYVYSETVNEAEGPSGTLPYGFQLSMDDHNEIFDPENDKQHFFETLE KSPLFADNQEGQKFIQQNKNKKVEKLPIWGVMLTGQTKNFKALQNEPFVRGASIGVTAPI VPYIQPEK >gi|307679041|gb|GL456756.1| GENE 6 4311 - 6092 2141 593 aa, chain + ## HITS:1 COG:no KEGG:EF3018 NR:ns ## KEGG: EF3018 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 593 1 593 593 1099 99.0 0 MFFNFIGLTLFFGIGILVANGAKIVANKGKKSKGTILLMAIELLLLGIFLFVTLPSKNLS TVLWINLIGAVIASGVLLSTRLASKVEVPGIPKGRKEVGKNTNKTANKDWSGKILGVAVL AMILLTIVSSITRISSIDEIYQTIPLKTEEKAEVLTSAKETPIAIAPQTAKRKMLQKFSV IPNSNMFTLDGITAQVVNGEYVYVATVEFNGFFKWLKLGEVPGYFIISATDINAQPEFVE KPIVYTPSAYFGKDAARKIYSAYPGYAATGTINLELDDQGNPYYIQTLYKEYGVSGRMHY NEFKTAVLNATTGEVNVYDSQKAPSFVDAPITSSAANSLNEFFGRYSQGWWNQTMFGAKK DVKIPTENGIYASGQITPMMNKEGNQLLYFTDFTSSEKDQDSALGYSLINARTGQVTYYR DTKVGIMDSDGAISIASKIYPEKKWKASMPVLYNIDGVPTWIVSLMDSKGIFKKYVYINA VDNDIVIDADTAQGALDAYRIELVTKGSNNENTDKANLKTMQGKVARVSVVAGEAQTVVS FLLEDEKTIFSVTTNNSPLALFLKEGDQVTFKAVVTENAKAANVEELKIAGLN >gi|307679041|gb|GL456756.1| GENE 7 6204 - 6944 741 246 aa, chain + ## HITS:1 COG:BH0167 KEGG:ns NR:ns ## COG: BH0167 COG0101 # Protein_GI_number: 15612730 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Bacillus halodurans # 1 238 1 238 263 204 44.0 1e-52 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARG QVANFKTTSSLTTTEMLSFLNRYLPGDIVVKEVTEMPERFHARYNATGKQYSYYVWNSPI PNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIERNG EMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGLFL DEVYYK >gi|307679041|gb|GL456756.1| GENE 8 6968 - 7927 785 319 aa, chain + ## HITS:1 COG:DR0508 KEGG:ns NR:ns ## COG: DR0508 COG1715 # Protein_GI_number: 15805535 # Func_class: V Defense mechanisms # Function: Restriction endonuclease # Organism: Deinococcus radiodurans # 8 316 16 336 336 213 36.0 4e-55 MNKDWKKLKASNEGIPTFESLMPYTLEVLKDGDVLNRKIILKRIIQFLDIPDEIASMMYP NYPQGDGILANRFSFAISDLYKAGAVERIKRGMYQITELGLDLLNNYGEKINRKLLEQQP AYQKYMQELVERNNRVGTTTIEASAPIESAKIDIEDMINNQNNQIAIELLNKVRQVEPVF FEKLVIHLLETMGYSGKHGTAVVTSKSNDGGIDGIINQDPLGTSTVYVQAKRYHETNTIG RPAIQGFYGALAAVNADRGVFITTSSFSANAHEFAKNQGIVLIDGIKLTELMLEFGVGVE IAKTYKLFRIDNDYFEDEL >gi|307679041|gb|GL456756.1| GENE 9 8043 - 8426 342 127 aa, chain + ## HITS:1 COG:MA2218 KEGG:ns NR:ns ## COG: MA2218 COG1226 # Protein_GI_number: 20091059 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, predicted NAD-binding component # Organism: Methanosarcina acetivorans str.C2A # 2 118 1 117 136 84 37.0 5e-17 MLSLLISVKKLFSSFLGILKKEDTRALFFLLATTLLSGTIFYSTVEKLSPLDSLYLSFMT LTTIGYGDVHPVTDLGKIFTMVYATVGLGIMAMFISVVAKSYLYSKQSHHHHHHKNKEHS AEKSSEK >gi|307679041|gb|GL456756.1| GENE 10 8555 - 9817 1437 420 aa, chain + ## HITS:1 COG:VCA0036 KEGG:ns NR:ns ## COG: VCA0036 COG3633 # Protein_GI_number: 15600807 # Func_class: E Amino acid transport and metabolism # Function: Na+/serine symporter # Organism: Vibrio cholerae # 9 397 14 403 405 366 55.0 1e-101 MVKAIRKLSLIQKIMIGIVIGTTLGFLVPEWTFISVLGELFVGALKAIAPILVFVLIIAS LAQQKAGAKTYVGSILVVYLLATFLAAVVAVTASYLFPVKIVLEAAQEAQAAPTQLSDVL SNVLTSVVQNPIQAMIEGNYLSVLFWSSLIGIGLRQSSVATKDVIANLSTGITTVVQMII GIAPIGILGLVFHSVATTGIAGLAKYGQLLLLLIGTMAVVALVVYPAIVFWNIRQNPYPL VFFVLKESAIPAFFTRSSAANIPINMELAKAMDLNEESYAVSIPLGATINMGGAAITITI MTLAAVHTLGMSVPIYLALLLSIIAAVSACGASGIAGGSLLLIPLACSLFGISNDIAMQV VGVGFIVGVVQDSIETALNSSSDLLFTTSVELADRRKNGEIIDVKALIGKSQLVVEQENI >gi|307679041|gb|GL456756.1| GENE 11 9967 - 12519 2385 850 aa, chain + ## HITS:1 COG:YPO0451 KEGG:ns NR:ns ## COG: YPO0451 COG0474 # Protein_GI_number: 16120780 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Yersinia pestis # 3 837 19 901 908 690 43.0 0 MKWYQLSSTKVIEQTKTKQTGLSSEERQQRLQTNGQNKIEEKQQLKTWQKLAKHFTDLLM VVLLAAAILKFATGEVVEGSIIFLVVLVNGFVGYWQERKAEESLDGLKQMMGQEAVVLID GQKTTVSSETLVLGDVVTLQAGDVVPADLRLFDVHNLMIEESILTGESEAVGKITGSLNE ELPTGDQKNLAFSGTLVQAGSALGVVVETGDSTEVGKINHALQSVDQKTTPLVRKMHQLN KQIFQGIMVLILFLIFFTTFRHGMEWSLLFSAMIALIVAMIPEGLPAVLTMILSMGVHEM ARENAIIKGMPSVETLGSMTVICSDKTGTLTKNEMTVMDVVTEEMTIVKEIMANCQELKL QDQQKIADLQGNPTELALLQYVDQDQLSLRPVEKKIPFSSSYKYMATRHPQAEGSIIYVK GAPEVLLQLSTLSDNQKDAWQAQAAQLAQKGQRVLGFAYKTVTSQQELTHETLSGLTFAG LAGIIDPPKKSAIQAVKESQEAGISVKMITGDHKDTAQAIGEQVGLKHTKKVLEGLEIDV MSDEELAQHVQKVDVFARTTPEHKLRIVTALQNNGEIVGMTGDGVNDAPALKKADVGIAM GIKGSEVTKQAADMVLADDNFHTIAKAVKEGRRIFDNLKKTITFFLPTSLAQGLIVVWAL LMNHPLPLTPVQILWVNMVTTITLSYALGFEKASADTMKRPPRDVNEGILTKYSIFRIVY VSVLIMVPGYLMALQFEGQALQQTFLLQSIVLAQAAYMINCRKLVDPSLSTGFFQNKVLF ASLGILFLLQALVVYWPVAQQLIGTTSLNGLQLAMIFVHVVSLFFLVEGEKYITKRFMTK ESQKTSECPR >gi|307679041|gb|GL456756.1| GENE 12 12525 - 13973 1200 482 aa, chain - ## HITS:1 COG:no KEGG:EF3013 NR:ns ## KEGG: EF3013 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 482 1 482 482 818 98.0 0 MYSMLKRVITEKDLLRQIRLLEQLLNVPQLTAKRLATQIQTTERTVFSDLQYIRSQLPAD WSIETDSSGIRLRNQGNAQTNELWSLFLPQSISIQLLKELLFTKELVTTSFLSTSGVSYE TLKRHIKKMNLALRDFHLTIQLTTTTIQLIGAESNIRIFYHRLLVPFTHNNYFFDDYSIH EEHYFQFLKQVYNSELTVETEEIFGACWFFINTIRNKANCRVSQFSFDSKDVLFQLYQPS LAKLYASEGIYLQGEESFFAFFCFLESWNYDNVYGETLASALHTHYSQLRKSLQQFVTNL STEEARPDLIQTNLLDNLLLLFIKYTESPTLSEQFQLEYQELMTEQAAEDLALSKSNQEL LEILSRYTTIEEPTYFLSLASLLEKQASYSIQAQTMTAYFLFQGEPAWKAFLQQELAAYL GTRVKLQAIEYVELSQLTLNEADIIISNFPLDHLDLPVFYLSLIPTKNELRRLAELTLHS YF >gi|307679041|gb|GL456756.1| GENE 13 14065 - 15246 988 393 aa, chain - ## HITS:1 COG:no KEGG:EF3012 NR:ns ## KEGG: EF3012 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 393 1 393 393 702 98.0 0 MKNKSINYEAVLALVVKIFLGMFLYWIMNGFRHVSNFFPYNDVVTKVNQQGFYKFIYFVM NFTEGEFYGGLFTTLFLLIGGLIAWQLYRKNSKWQGFAIAGGSGAWPWVLASQLLSLFLT IYVFDFTRFFTKEVLWLPTFIVVVGTPPALTLVYGPGWKKLGTISLLSALFTFPFANWLN AQLMPLLNVPGTVSNVTTMAFVGWIVSAICHQLPWMVPSVAPIAQKRQKQPKIENTQTFQ WSIRRTFADFSEAWFYGNELVGGLVILGVLTDWFVNINHITNGSGLVPDILMGQMIASAV GVFLYQKHFAEEGWYPTFMPLVSIVPGVILMMGGGFWLSLTIAVLAGISAAPVGSYIAKR LPPFVPGAVGFVSGMAVVTILLSAVLHTFDIFV >gi|307679041|gb|GL456756.1| GENE 14 15289 - 16713 1659 474 aa, chain - ## HITS:1 COG:no KEGG:EF3011 NR:ns ## KEGG: EF3011 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 474 1 474 474 960 99.0 0 MSRNDLFKQPLDTINVGIDFIHEDMKKQGIPSHQVNWAPPANGDPELLKLLDQLKNPTLY EKIQQANEEAVTRIIQSKPILVGFDKAINVMPDMTETTILHAGPPITYENMCGPMKGAVQ GALVFEGLAKDLADADRVARSGAITFSPCHEHDAVGSMAGVTSPNMYVHIIKNETYGNTA FTNLSEQLAKVLRFGANDQSVVDRLIWMRDVLGPLLHDAMTFCPEGIDLRLMLSQALHMG DECHNRNVAGSTLLVQALTPYMVQTDFSREQLKEVFEFLGSSDYFSGPTWMGAAKCALDA GHNVENSTIVTTMCRNGVEFGIRVSGIGGNHWFTGPAQRVIGPMFAGYTQEDAGLDMGDS AITETYGVGGFAMAAAPAIVPLVGGTVAEALNYSKEMLEITTKENPNVTIPVLDFMGIPS GIDVLKVLETGMLPVINTAIAHKEPGIGMIGAGLTNPPANVFNEALKALVAKIN >gi|307679041|gb|GL456756.1| GENE 15 16700 - 18259 1995 519 aa, chain - ## HITS:1 COG:ECs0369 KEGG:ns NR:ns ## COG: ECs0369 COG0074 # Protein_GI_number: 15829623 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, alpha subunit # Organism: Escherichia coli O157:H7 # 1 515 1 514 515 511 52.0 1e-145 MTIQTVIKENAYFDSVTLMTISTRANELAGVKTAMIGMGTDMNLEVIRNVGLYTPALDHV TTGDLLIVLDLDDQANSEEILQQVDELFTKKKKTASSEVTYKTLDSALHEEPDANLVVIS VNGKFAAREAHKALDQQKHVMLFSDNVTVDEELALKQKAHEKELFVMGPDCGTAIINGVG LCFANEVRSGDIGIVGASGTGSQEVSVQIHKYGYGISQLIGTGGRDLSAEIGGLMMLDGL DALMVDEQTKAILLISKPPAPEVTEKILKKLAVSTKPVVIYFIGSEQTERKIDNVTFATS SLDAVQKVIQFSQTQEAETSLYQNPTGATLTAIQQQQAPSQKFVRGLFCGGTLCDELLYA LTEVSDDVYSNIHKIPERQLANPDHSQAHTLIDFGDDRFTEGRPHPMIDPTSRITRILQE AKDPEVAVLALDFELGYGSHENPVGVLAEALKEAKAIAKADGRELAIIGYVLGTEEDPQD IHEQRKILEDLEVLVVDSSHQLCEATKTFVKGANEHEQK >gi|307679041|gb|GL456756.1| GENE 16 18237 - 19103 548 288 aa, chain - ## HITS:1 COG:no KEGG:EF3009 NR:ns ## KEGG: EF3009 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 288 1 288 288 555 99.0 1e-157 MTKILAYDQTILSKLPHQTLTSLQCFTHAINYGHVDTQEILLTISTHPEHIAPNTIILDE KKLSHFADLPVQIEPLFIRLGRRQLTLADAQIWQPTPLYLTPSKTKIAIFLTYIQQTRFN PWQALFPASPSTFLFDSYSRTQIQKEMIHFQQAWEQKSFKIALDCLTKILGLGIGLTPTG DDFITGLLASFSALKQLPSNFQQLAVLAKERTNAVSYAEIHEAVNERFSQLVQRVFLSIE SGNTNEMAQAVSALEEVGSTSGSDILCGIIFGLKLFCEENNHDNSNSN >gi|307679041|gb|GL456756.1| GENE 17 19234 - 20889 1280 551 aa, chain + ## HITS:1 COG:BS_yunI KEGG:ns NR:ns ## COG: BS_yunI COG2508 # Protein_GI_number: 16080295 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Bacillus subtilis # 2 530 1 507 531 123 23.0 1e-27 MLKVSDLLTLEELPGITLVAGHKNQDQPILKVNILENPDILDWLTAGELLLTTGYIFKDD RKLQKNFLKELAKHHCAALGFKTQRYFEEVPPDLIKLADEMNVPILAIPYNYTFSQIADV LKSRVTLEQFDMNAQETALHNKIYQILETGSSSFHLLQDLAETIQNPVLLLNDHFEGVNF FDLPKNPIRISSILEDRQETSEFQKQLLEQSHPLLRFYQEPIHLQLKLQNQVVPIEIYPI KKKNVILYYLLVWNTLAPLRPVDVAHFKITAHYLLLQLQLEYSRKFEEYQQRNELFFKLI AHEKRDQAVFQQFQQYYRLAIDKPYAILLISLTLNERQRQERMSILGNQLNQVILGDKQK IVCIEIDSSFVLLVEDPPEKEGDYLKMMQRLAKSSINQLMKVQEDVELFLTIGPKIQGLT QIHESYQQAIDVLAFQRQFVAEKPEMRIASYANFHFRQTLQRYFLEEGQATLRKKYLQPL QKSDQQQHTDFVHTLNVYFQSKRNLSQTAKKLFIHRNTLLQRLEKIEQLVLLDFDKEVDL LALEVALFVGT >gi|307679041|gb|GL456756.1| GENE 18 21112 - 22305 778 397 aa, chain + ## HITS:1 COG:no KEGG:EF3007 NR:ns ## KEGG: EF3007 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 41 397 1 357 357 616 98.0 1e-175 MWTIIVSGLFLSSIIAGISGAFLIIEGELTTLLWEVLPAQMKWPILYYFVLCVLGALVLS YLKKRFGQIPQTAHEALTELKAKQSVDYSGVFRNLLAALVILIFGAGVGPEAALLGAIIS LSVWQSDKLRYLYFHYDEQEQQAFRTKIQRLLHPQQFVQRYDTMLAPVDKKKLKQVMNGL FIVNGLVVFTFLMKLVGHPSFITKLGTGKIEMASLWLILPALLTAFVIGNAYQWLKAALA KLCQPFEEKQSILVSFGAACIFLFVILMPRLLFSGQSFMHLVPSFGSQQAWYILVIAAIM KLVFLQVCLQTGWIGGDIFPVVFSAILIGFAVAQFFPTIDSLFVVAIFATSLTTQILGTI LVPGIFVGLFFPITLWPIVVLVLFLQWLLKNKIIKSN >gi|307679041|gb|GL456756.1| GENE 19 22330 - 22986 583 218 aa, chain + ## HITS:1 COG:no KEGG:EF3006 NR:ns ## KEGG: EF3006 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 218 1 218 218 387 99.0 1e-106 MNLTHQDFNLFNREIFTFKQLKEQQTSAEIDDLKQTYKQHWEKWKALNLAIAQGLPAELG ITKPKIESWTNGWNLRSHFWAAYRSEQRQAENACLALLLNKKQFQVYLMFQHYKSEERAG SVVAYNQLLNRLEAWSQTIDCEGYYIWPQEEHELVDHLPLKDYLADEKQRKILEERIGNR SFQIGKLWFATEKLETIEEKSCQALQELAPLYNALSEK >gi|307679041|gb|GL456756.1| GENE 20 23038 - 24105 1132 355 aa, chain - ## HITS:1 COG:BMEI0543 KEGG:ns NR:ns ## COG: BMEI0543 COG3049 # Protein_GI_number: 17986826 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Penicillin V acylase and related amidases # Organism: Brucella melitensis # 2 320 37 329 367 126 31.0 6e-29 MCTGIKIISKTNDIFYGRTMDFTFDFFGNEDPIAPKIPTLIAQFPKGTVLNSQLNPWTAK YAFMGLAMSGTDQPANDGKTVSLAITDGINEAGLSGDIQYLMESSTAPAESLAERGLTPH IAEEVLAYILSNFESVDEVKVAFEKIGLLDQKFQLDSLGEVHFTLHWTINDKNNNSIVLQ PTDNGAFVIYDSIGVVTNSPEYNYHLTNVRNYIGMRNYAIKEPYTLKSGATLDPIEGGTS YGLLGIPGDFTSPSRFIRALYFSDNLQEFDSSEGIMQLYRAFQTVMIPRGIGHLGQSNSL SDFTHYWSGYDVTNLTMYVQPESTTSFTKYTLDPALTEVTTFAVSNELLLTDLNQ >gi|307679041|gb|GL456756.1| GENE 21 24383 - 25942 1403 519 aa, chain + ## HITS:1 COG:L1004 KEGG:ns NR:ns ## COG: L1004 COG0659 # Protein_GI_number: 15672032 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfate permease and related transporters (MFS superfamily) # Organism: Lactococcus lactis # 61 511 1 452 460 398 49.0 1e-110 MKKDFLAGLTVAAVALPLALAFGVSSGATAAAGMITAIIAGIVIGSLSGGFYQISGPTGA MAAILMSIAAVHGMQGILLATFLAGIFLLLAGILRLGSLTSFIPSPVITGFTSGIAIIIA LGQLDNFFGVRSEGHNLIEKISSYRSLGFDLSIPTTVMSILVVLGLVFFPKKWNAMIPAS LVMIILATLATVVFQLPVATVGKIPTSIFSDTRLELGSLQLSAFQDILVPSISIAMLGMI ESLLCGASAGRMTGKPLDSNQELVAQGIGNLILPFFGGVPATAAIARTSVVIKSGAQTRL AGIFHAVFLLLSMLLLSPVMSKIPMPALAGVLVVTAWRMNEWSVIKEFFQKRFHTALCLF FLTMVATVIFDLSLAIVLGVLAGCLFFIAKSAVITINVEEVDWSRMGLVPTDCTENWVVV YLSGPLFFMSSERLKQTLLQLETKSGVVFSMRGVPSIDSTALDILEEFCLAAEGRGQQVQ FAALQPEVEKMIRTIQGNQEKEYHFSVAEFLQTVHVAEQ >gi|307679041|gb|GL456756.1| GENE 22 26106 - 26798 624 230 aa, chain - ## HITS:1 COG:no KEGG:EF3003 NR:ns ## KEGG: EF3003 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 230 1 230 230 315 96.0 1e-84 MKKLVCVILVIFLTGCSSQKANEPKEQENSTNHTTSMKSSTNHYSSSTETSSNNKLKETS ESASTTQASAKSKNEVSTNVEETNSLEATPYAVDLSSLNNPLVFNFKGMNVPTSITLENL NSTPTATFRTKLFGAENGQVKEAINKYELSINTIPTKEIRIFSAGDNSIRTVKVNTELIL GTNISSNDEQNRSGTLYLFNNKNGSISLITPNYAGNVTDDQKDVMLEVIQ >gi|307679041|gb|GL456756.1| GENE 23 26991 - 27443 576 150 aa, chain + ## HITS:1 COG:BH3077 KEGG:ns NR:ns ## COG: BH3077 COG1846 # Protein_GI_number: 15615639 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 150 1 150 150 197 72.0 4e-51 MTDILREIGMIARALDSISNIEFKELSLTRGQYLYLVRICENPGIIQEKIAELIKVDRTT AARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVE ISQLADYLVRMRKNVSEDWEFVKKGNTRNY >gi|307679041|gb|GL456756.1| GENE 24 27462 - 27974 609 170 aa, chain + ## HITS:1 COG:BS_paiA KEGG:ns NR:ns ## COG: BS_paiA COG0454 # Protein_GI_number: 16080268 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 3 170 4 171 172 166 51.0 2e-41 MGEIKKLTIEDAPALQEISIETYTDTFGPYNTPENMQAYLVEAYNLEKLQKELANPHSDF YFIFVDNQLAGYMKLNREKAQTEPMGPEKLEVERLYILPAFKGKKLGTQLLELAEEKARE FGKNALWLGVWEHNDAARAFYKTIGYRYYSQHSFFMGDDEQTDFILLKEL >gi|307679041|gb|GL456756.1| GENE 25 28569 - 30065 1567 498 aa, chain + ## HITS:1 COG:ECs0572 KEGG:ns NR:ns ## COG: ECs0572 COG1953 # Protein_GI_number: 15829826 # Func_class: F Nucleotide transport and metabolism; H Coenzyme transport and metabolism # Function: Cytosine/uracil/thiamine/allantoin permeases # Organism: Escherichia coli O157:H7 # 11 473 3 462 463 444 54.0 1e-124 MEKNVSQVTAQEETAMKARGYNEDLLPSSPKQRTMGARNFFTLWMGSIHNIPNYAAVGGF IFLGLSPLQVMLAVVLSSFIVATFMNLNGVAGSKYGIPFAMHLQSTYGSLGAKLPGFLRG CVAAIAWFGLQTFTGSLALLIILGKFWPNFLEIGGSFQFFGLRLPELMAFTLFWLLNVAI GFGGSKILNRFTAILSPLIYVVIIGLTIWAIRAGGGLTPILSYQVSGAIRSVNPLVAYLI IFNSVVAVWSAPGASVADFTKNARSTRAQVVGQTAGLVVGYGIFAFSSVVILLGGSLYFG IQEWNILNIIDRLDNVAVVVLAMSVFLLTTISTNATGNIIPAGYQLAALFPKKMTYKKGV MIASVISFLIMPWKLMENADSIFIFLNAIGAVLGPVAGVMIANYYFVQKQQIDLNALYVD KYKKEEANPFYGLNKPAYVATILALVLSLSGQFIPQVKIIADISWFVGFATGFVLYLVLK KWTWDSKKVKETAYQEGK >gi|307679041|gb|GL456756.1| GENE 26 30066 - 31430 1620 454 aa, chain + ## HITS:1 COG:ybbX KEGG:ns NR:ns ## COG: ybbX COG0044 # Protein_GI_number: 16128496 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Escherichia coli K12 # 1 452 1 448 453 512 54.0 1e-145 MQAELVIKNGLVILETGEVITDVAVQGGKIVAIGQDLSGERVIDATGLVVSPGMVDAHVH ITDPGGGYRDEWEGYVTGTAACAKGGVTTFMEMPLNQIPATVDKTSLEIKYKAGENKLKV DVGSFGGVVPTNLAGGIQELDEGGVSGYKCFLGTCGDRSIEGDFQNVDDYSLYEGMKQVA KTGKVLAIHAENAPITDKLGAVAYQNGETTLAAYVATRPVFTEVEAIQKAILFAKETGCR IHICHVACQEGVEEVLKAQAEGIDVTCETCTHYLYFTTDELDAIGPVVKCSPPIRDADQQ AALWNHVQTGGIAFVTSDHSPCTPDLKDTTNAFEAWGGISGVQNNVDVLFDEAVQKRGLS LKQFADMIAANPADRYHLAQKGRISIGKDADFVLIKPNAPYILKAEDLEYRNKISPYIGR EIGAQVIQTILRGETIYAQETGVTEAFNGVFIKN >gi|307679041|gb|GL456756.1| GENE 27 31612 - 32835 1433 407 aa, chain + ## HITS:1 COG:ECs0578 KEGG:ns NR:ns ## COG: ECs0578 COG0624 # Protein_GI_number: 15829832 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Escherichia coli O157:H7 # 7 407 5 410 411 509 59.0 1e-144 MDLEKVLKQRIEELSAIGSDPAGGMTRLLYTDSWLAAQKYVQSQTEAFGLETQFDEVGNL FCRVAGTEFPQETILTGSHIDTVVNGGTLDGQYGVIASMTAVQYLLDKYGKPRRSLEVLS MAEEEGSRFPTVFWGSKNVVGEAKCEEVVDISDNEGKKFVDEMHRQGFDFRQEQTRREDI EAFVEIHIEQGNILENEKLQVGVVHSIVGQRRYTVNLKGQANHAGTTPMSYRHDAVYGFA KICAEAIDRANEIGDPLVLTFGKVIPKPNTVNVVPGEVEFTIDCRHTDAAFLRHFTGELE ERMKTIAQELGLTIAIDRWMDEAPVPMNQAIVEVIEQKAKEGKYQYRMMHSGAGHDSQII APHYPTAMIFVPSIGGISHNPAEATAFPDLVEGVKLLADTLYELAYK >gi|307679041|gb|GL456756.1| GENE 28 32857 - 33642 1047 261 aa, chain + ## HITS:1 COG:STM0526 KEGG:ns NR:ns ## COG: STM0526 COG3257 # Protein_GI_number: 16763906 # Func_class: R General function prediction only # Function: Uncharacterized protein, possibly involved in glyoxylate utilization # Organism: Salmonella typhimurium LT2 # 1 258 1 258 261 296 58.0 3e-80 MGYKNNRVGYQKELLTSRAVIKKDNYAIIPHDGLVQNAVPGFENVDISILGSPKLGATFV DYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSDGQETHELEAGGYAYFTPEMKMYLA NAQEADTEVFLYKKRYQPLAGHQPYKVVGSIHDQQPEEYEGMTDVLLWSLLPKEFDFDMN MHILSFEPGASHAYIETHVQEHGAYLISGQGMYNLDNEWYPVEKGDYIFMSAYVPQAAYA VGREEPLMYVYSKDANREPEL >gi|307679041|gb|GL456756.1| GENE 29 33760 - 35385 1410 541 aa, chain - ## HITS:1 COG:BS_yunI KEGG:ns NR:ns ## COG: BS_yunI COG2508 # Protein_GI_number: 16080295 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Bacillus subtilis # 1 538 1 526 531 179 24.0 9e-45 MKILAEVLALPRFSDLQLLSSHSNLTQPLESVEITETPDVADFIPKNVMILTTAMIYKDD QEKLKPFIDSLKQAECTALGIKVGRFLDEISPEIVAYASAVDLPLIKIPSTQPLGGLLHE IVGYLRDSKTEQMSVAFDIQKRFSTLLMQDVDATRFIAEFAKILNAPIILLSPWQQVIAH SNYFYGNQKSAEFFIEQLSKDHFQQLAQEKKIFRLQDERQENIQVAGFPIRVNDYFPYYL LVLSPEQIPYPISEFAIDQAILVLTFMLFKNQKIAESFEHLKTDFLDRLLDTHQETLSKH QNWLELWKNYRLINSDYYQLAIVYGVTKPENETHIRYQQAEGQLIFQWLKEQLPEILPDV ALFKLKNQNKSILIFQSKKNDHLMILQNLAERLQQALPITIRFAFGNAYENLEDLPNSYI EASSTLEASLHAQKPATVQLFHPKGLAGLFEKIGTEDVEYFCQQQLKELAYPTEPTLQEL RKTLKVFLDFNCEITKTANALYLHRNTIKYRMNQCEKLLDTSIQEPETSLLLRVALELSE K >gi|307679041|gb|GL456756.1| GENE 30 35557 - 36765 1329 402 aa, chain + ## HITS:1 COG:BS_yurG KEGG:ns NR:ns ## COG: BS_yurG COG0075 # Protein_GI_number: 16080305 # Func_class: E Amino acid transport and metabolism # Function: Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase # Organism: Bacillus subtilis # 10 402 12 409 416 435 54.0 1e-122 MYQQPNFVRRTIMTPGPVEAHPSVLRQMGQPILGQFDPEFLQIMDEVREMIKVPFATKNQ QAFAIDGTSRSGLEAGLFALIEPGDKVLVPAYGRFAYLLGEICERARAEVIYLEKDWLAP FEQTTVIEAIKEHQPKIVAMVHGETANAQMQPLDQIGAFCRENEIFFVVDMVATYGGVET KVDDWKIDIAVAGTQKCVSVPSGLSLITYNQRVADYLAGRYQKELGLGADARNERFIQSN YLDLSQLEKYWGPERLNHHTEATTMIYGLHEGLRLLLQEGMENVYARHRKNDRILVESLQ KMGLEIFGKLDTKTPTVIPVVIPEGIDGEKVRSLLLDHFKVEIASSFGDLKGKIWRVGNM GYSSREDNVLHFLSAFETVLKHQGYQFEGGSGSTHALAEYLN >gi|307679041|gb|GL456756.1| GENE 31 36863 - 38122 1513 419 aa, chain + ## HITS:1 COG:STM0520 KEGG:ns NR:ns ## COG: STM0520 COG0477 # Protein_GI_number: 16763900 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 414 1 408 415 377 49.0 1e-104 MTDKTKSSLAYWKKIVILLCMGWVTIWIYRSALSPVYPQIRASLNGNASDTALGSISSFY FLGYVVMQIPAGFLVDKIGKKRVLIPGFILFALAALLIAQAQTIGTIYLGSLLAGLGCGS FYGSAYSLTSQNIPQAKKSFATAIVNSGSAVGSGLGMILSSYLVAQKGLPWQVMMYISAF MIICMLVAFQVIIRNHKEDMALIQPTVVDEKDNGAVKEKVPFKKLFAPHMLFAYILYFGT CYAYYMIVTWLPNFLSTERGFQGAAIGLSSSLVAFASIPGALFFSRLADKYMHKKVQFIV VLEFLATAMLLLTVQVSNATLLLIALIMYGFLGKLAVEPIIISWLGENAPKIGIGTTLGV FNFFGMMSSVIAPALTGKISDTTGSKVMGFYIAVVILLIGTILFMLVNLKKRGADSSNK >gi|307679041|gb|GL456756.1| GENE 32 38168 - 38428 385 86 aa, chain - ## HITS:1 COG:SA0045 KEGG:ns NR:ns ## COG: SA0045 COG1937 # Protein_GI_number: 15925752 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 6 85 5 84 86 67 46.0 5e-12 MTEEKKKVLNRLRRTEGQIRGIQKMIDEEKECIDVITQLSAVRSSIDRVMGMIVAENLKH CFENPEKDPKEQEERLAQAINMIVKK >gi|307679041|gb|GL456756.1| GENE 33 38597 - 38911 441 104 aa, chain + ## HITS:1 COG:L193718 KEGG:ns NR:ns ## COG: L193718 COG0607 # Protein_GI_number: 15672767 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Lactococcus lactis # 2 101 1 101 102 93 51.0 7e-20 MLFQLFKKTPSISTKELQSRLSKEITLLDVRTPSEYRAGHIPQAINVPLNKIPAYNKSAN EVYVICQSGMRSKNAAKILARKNYHVINVRGGMSQWSGQIKGGK >gi|307679041|gb|GL456756.1| GENE 34 38912 - 40561 2383 549 aa, chain + ## HITS:1 COG:L194050_1 KEGG:ns NR:ns ## COG: L194050_1 COG0446 # Protein_GI_number: 15672768 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Lactococcus lactis # 2 456 4 456 456 585 66.0 1e-167 MKIVIIGGVAGGMSAATRLRRLMEDAEIVVMEKGPFVSFANCGLPYYVSGEIAEREQLLV QTPEALKARFNLDVRPHHEVVAIDPIEKVITVKHETEILTEHYDKLILSPGAKPFVPPIT GLAEAKNVFSLRNVPDLDQIMTALTPETKRAVVIGAGFIGLEMAENLQKRGLEVTLVEKA PHVLPPLDEEMAAFVKAELSKNNVQVITGQSAVAFEEEGQVIRLEDGQTLDSDLTILSVG VQPENTLAVEAGVATGLRGGIVVDERYQTNQPDIYAVGDAIVVKQQITQEDALISLASPA NRQGRQVADVIAGLERKNQGSIGTAIVRVFDLTAASTGLSERAAKAAGLTTAVVHISGKD HAGYYPGATDLQLKLVFHPTTGEIYGAQGIGAKGVDKRIDILATAIKGQLTIFDLPELEF TYAPPFGSAKDPVNMLGYAAMNLVEGLSENVQWYELSNELAKGAVLLDVRNPAERANGQF KNAVSIPLNELRERLEELDKSTEYIVSCHSGLRSYIAERMLKQAGISAKNLDGAFALYRM VKPEELENV >gi|307679041|gb|GL456756.1| GENE 35 40554 - 40853 463 99 aa, chain + ## HITS:1 COG:lin0618 KEGG:ns NR:ns ## COG: lin0618 COG0607 # Protein_GI_number: 16799693 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Listeria innocua # 1 99 1 99 99 89 41.0 2e-18 MYNTIGMPEFYQEAKRKKLPIIDVREEMEYQLGHVPQAINLPLSTLTENYQQLDKNQPYY LICQMGSRSAQACAFLSQQGYQVTNVLGGTSGWLGQLEQ >gi|307679041|gb|GL456756.1| GENE 36 41025 - 42191 1550 388 aa, chain + ## HITS:1 COG:BS_yknX KEGG:ns NR:ns ## COG: BS_yknX COG0845 # Protein_GI_number: 16078499 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Bacillus subtilis # 11 383 2 376 377 90 27.0 7e-18 MKKSGQKKRNKKVWFGIGAAVVVVGFIGAKTVFSSKEVEPEYTTYTITEMASLKLDGQVS FLDTRDIFFDPSLGKIAEINVENGKEVKKDSPLLTYNNSDIQATETEQANAVNRNNLQVQ QAQENVNLATQKYNEALNKVAAAKQKLNTAKEAEEKETLNAEIQQLNEAVSAANSEVAQA NQALQLANSDAVGAANTLEQTRGKVNTVVTAPIDGQVTVDASAMSSTDKPVIKIATQKKN IQGKVTEYDYDKLQTGEEVTVTTVGSGKSAPGKIVSIAQTPIAKNEGNPVVSYQFTVEGD FPWAEGLSTSIAVPQKQMIIPTAAIQKEGEKEFVYVYKAGKAKKTPIETETNLGRKVVKS GLNWKDQVIANPNKELKDNQDVQVAAND >gi|307679041|gb|GL456756.1| GENE 37 42184 - 42858 353 224 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 221 1 220 245 140 36 2e-32 MIKLSHIHKYYYSEEETLHVLDDINLQVDAGEFLAIMGPSGSGKSTLINLLGFIDKKFEG TYLFEDREIGDFSDKELSRIRNEAVGFVFQNFSLIETLTVEENIELPLLYSGLTPKEAKD RVHEVLTKVGLPDKGKKHPKQLSGGQQQRVAIARAIVNRPSFIIADEPTGALDSKTSEEI LTLFQQLNNEGVTIILVTHDEETIEYCNRLIKVRDGKILEEVLT >gi|307679041|gb|GL456756.1| GENE 38 42855 - 44063 1318 402 aa, chain + ## HITS:1 COG:SA0193 KEGG:ns NR:ns ## COG: SA0193 COG0577 # Protein_GI_number: 15925903 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Staphylococcus aureus N315 # 6 402 7 392 392 186 34.0 8e-47 MKRSIIWKTAFRSILKNKRRSLLTMLGIVIGIASVITIVAIGNGFKEDMVDKLSAEKQKE NVKKISFSAYNTSDMFSDQAMFTDNDLGVVRMVPGVEKIDFDQREVDGAQKGTLNFQAGP KNLSVTYELADKTTKELLAGRQLNDGDNAKLDKTVVVDELVAKELYQDPTAAVNRTFPYK EQLFTIVGVTTNTSGAIGPGNDDSLLYFPKKTYEHYFGKLKDTSTLKLTVAPGYQPDQVL KETIKTLSQQGTMKNSGTYQEYNVKDTIKEMGSLLNNLTLFISAIAAISLVIAGVGVMNM MYISVSERIKEIGIRRALGGTASDIKKQFLTEGIALTLIGGITGYLLGMIIAYLASMALP FSVRPDLMTVSLAIGISVFIGVVFSYFPASAASKKDLIDIMK >gi|307679041|gb|GL456756.1| GENE 39 44444 - 45109 483 221 aa, chain + ## HITS:1 COG:no KEGG:EF2984 NR:ns ## KEGG: EF2984 # Name: not_defined # Def: transcriptional regulator, putative # Organism: E.faecalis # Pathway: not_defined # 1 221 1 221 221 407 100.0 1e-112 MKIMVITKNILSETAFQNRLQHLDHQVFCTTCLIGEIKESHLFYRKFDAIILSETIPRKE QYLYLKELARVKTPLFLRSEDIPTSEELSISYQYGILNWLRLDATLDTLRENLLLAELNK PIQREDEKLDVEGIKLTAAERALLAVLYSTPKEHLPMERLCKLIYDTEETANNRKKMTKQ LTKLNKKIQVGGFKKQGIQNTRYKGYKLHPQLLPYIGELFT >gi|307679041|gb|GL456756.1| GENE 40 45206 - 46654 1526 482 aa, chain + ## HITS:1 COG:L169390 KEGG:ns NR:ns ## COG: L169390 COG0154 # Protein_GI_number: 15672148 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases # Organism: Lactococcus lactis # 1 482 4 499 499 375 43.0 1e-103 MKDGLYWVQQLKEQKVSRIELLKDIEKKVQKLNPKINGFVTFDSQEAEATYQKNKQQDTL FAGLPFPLKMLGQEKAGWSATAGSQLFKNSTATTTSNFVKQAETIGLMPLGQTNAPEFGF KNITDPALYGPARNPWNLEHSPGGSSGGAAAVVASGIVPIAGASDGGGSIRIPASFSGLI GLKPSRGSMPVGPEGWRGWQGASIDFALTISMRDTKALFYGLRGSHSGAPYQAPLAEWQT HPKKQRLKIALCTASPIGSLISPEATQAAKQAADFLAAAGHEIIEIPYPVDGAALIRSYY QMNGAETTAMMNSIQQGLGRPIRKEEIEPFSWTMHQFGQKIPAATYVHSLQLWDQAAVTM EELFQKFDLFLSPTTAFSAPKINEDLQSEHIRQRMEQAAELTEAELAELIYDYFDKSLQL TPYTQLANLTGQPAISLPTHVTATGLPLGIQLLAARGREDLLFQVGEQFEQEGKFKLPES YR >gi|307679041|gb|GL456756.1| GENE 41 46720 - 47247 501 175 aa, chain + ## HITS:1 COG:YPO0455 KEGG:ns NR:ns ## COG: YPO0455 COG0406 # Protein_GI_number: 16120784 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Yersinia pestis # 2 130 4 137 215 95 37.0 6e-20 MLYVVRHGETDYNVARRICGHAEAQLTKKGYQQAELVAEKIAKQGIQIDRLLASPLKRAQ ETARKIAERNQLTIETEPRLIEMNFGIYDGEPIETTAFQENRSEISLPFPEGESVLDVAG RIYPLIEEALASEETYLFVCHNAVMRVIDNYFNGKKIQDFLDFHCENTQLVQYGE >gi|307679041|gb|GL456756.1| GENE 42 47369 - 50182 2128 937 aa, chain + ## HITS:1 COG:STM3773_1 KEGG:ns NR:ns ## COG: STM3773_1 COG1221 # Protein_GI_number: 16767057 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Salmonella typhimurium LT2 # 28 462 30 458 460 289 36.0 2e-77 MRIDNIHQALKQFHVQNPSSKETLLPATASQLSQTSGYTRTAVSEELSELVRKDQVVKVK SRPVLFFDKDYLEEQFPFFKSSTCYDSLASLQEDIYQQTEQIHKKKQLLKMNPFANVIGF DGSLADAIKKLKAAILYPPNGLNILLTGESGVGKTLIAEQLHQFYQVKMNQEVPFIYFNC AEYFNNPELLTSHLFGYKKGSFTGAVNDQKGLVELADGGFLFLDEVHRLTSEGQEKLFTV LDKGYFTRMGEAEKQRNVSIKFIFATTEAVNQHFLKTFLRRIPVTLAIPALAERSLKEKI QLILSFFLEESQRIQKNIHIRYEALKQLTFTHFEANVGELKAAIQFMSAQAYLEVFDQLT ETICIEANEGTVKEQPDVESLLAFNEWIPNDGLTIQYNHFYLSSQELLKSESLKNDRFYN FLLKEYADLKKLTLSTEDALAIMQNKVEQLYDMDIFAQEPLALEAIDETLQPKIQEAIVF FEQLIQEKLTEDFQNILIVHLYSAVFYSAQMNETFYSDTKNIYSGKVTQYQAAKTMVDFL QTLFGISFADTEILFFDLFIRKVTAKKRAHSDEENCGVIVVAHGAATASSMVEYTNLLFS TTVMRAVDMPINQSVEETLEKVRTIVKQNQYKKIILMVDIGSLVYFGNAISQTFQMEVLL ISNINLLTLLEVAREVIYESTAFEYLLPVLKEKNHRALICSKGRFNEAKVLIISCLTGMG TAIKIEQLLLKTFPNELLTNVRIITLEKREVEDIDRLHSFVRKEEKIVGIIGTVKTEVPD IPFISLQDLLSKRGIQLVFELLDHHLEEKQNQELLKKVSAKYIQGLSIEAITDLLTVLNP TTISIELAKIYSDICLQTKIKSDEKVLLRFIIHCACMLERQLLNPEYDPTAYEVSYRELP EAVSVIKMAFRPLEVSYNLLIPPLEVRYIYELLFEKA >gi|307679041|gb|GL456756.1| GENE 43 50254 - 50655 450 133 aa, chain + ## HITS:1 COG:STM3772 KEGG:ns NR:ns ## COG: STM3772 COG2893 # Protein_GI_number: 16767056 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Salmonella typhimurium LT2 # 6 105 10 107 141 85 48.0 2e-17 MENEPILLLTHNGWGLELVKSVQMIVGEVTNVHEVALQAEDSLGDYLERVTEKIDQLTWH NQLLILTDVKGGTPSNVALRLSKDYDLLIVSGLCTSLLLESVMKQSGPGFRLQDAEMIQQ AAVDSCQILEIPK >gi|307679041|gb|GL456756.1| GENE 44 50675 - 51169 639 164 aa, chain + ## HITS:1 COG:STM3771 KEGG:ns NR:ns ## COG: STM3771 COG3444 # Protein_GI_number: 16767055 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Salmonella typhimurium LT2 # 1 161 1 161 161 167 50.0 1e-41 MSKIVLTRVDSRLIHGQVVTKWLQQSGANEILVVSDELEQDEFLQSIYLMAAPPGVSVVI KGIESAKEYWESQEKEEKKVLFLVPDLTTLKAMVDQEIIKEEIQVGGLGGGPNRKNVLKN INLSEEDVAILTELLTKGIHVFFQAIPEENPLPIQKLIEKYQSL >gi|307679041|gb|GL456756.1| GENE 45 51193 - 51942 1070 249 aa, chain + ## HITS:1 COG:STM3770 KEGG:ns NR:ns ## COG: STM3770 COG3715 # Protein_GI_number: 16767054 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Salmonella typhimurium LT2 # 1 249 1 249 249 291 63.0 1e-78 MGVLGVSIIMGLYYWFARLRFGYTFSGMLSQPLGAALVAGLATGKLSEAMVVGAGIQLVY LGVTSTPGGNVPSDPALASAIAIPIALGVGMNAEAAVALAVPFGVLGVFMDQLRRTINAT WVHMADKYAEELNYGGIYRAAFVYPALAGFLIRFPLVFAANFFGQSVVNKVLEVIPAWLM HGFEVMGGILPALGFALTIMVIGKKNLIPYFLIGFVAVVYFGAEVMAVAILGICIAFLVR NKALSEEAA >gi|307679041|gb|GL456756.1| GENE 46 51942 - 52793 1107 283 aa, chain + ## HITS:1 COG:STM3769 KEGG:ns NR:ns ## COG: STM3769 COG3716 # Protein_GI_number: 16767053 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Salmonella typhimurium LT2 # 9 283 13 286 286 321 62.0 1e-87 MEQMTQANEQQLEQKKITKKELSKAFWIYQLGCELSNSYERLQSLVFCASMIPAIKKLYA DDEEQQKEALKRHLNFFNTEGTVGASIQGIAIAMEEEKSNGAAISDTAITSIKTGLMGPL AGIGDSIIWAALMPLIISIFIPMAKGGNVIGSIGPLVLYTAITLYISWTLVNKSYTLGRN SILSLLKDGKIKQVIYSANVLGMMMMGALSASYVKIASPMTFKVTGGATIVLQDILDQIM KGLLPLAAVMAIYFFMVKKGPRYGIIIGTIVLVSLVTSFFGLL Prediction of potential genes in microbial genomes Time: Tue Jul 5 18:15:25 2011 Seq name: gi|307679040|gb|GL456757.1| Enterococcus faecalis TX0312 genomic scaffold Scfld14, whole genome shotgun sequence Length of sequence - 79800 bp Number of predicted genes - 76, with homology - 76 Number of transcription units - 43, operones - 21 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 45 - 104 9.3 1 1 Tu 1 . + CDS 134 - 1084 1398 ## COG1054 Predicted sulfurtransferase + Term 1099 - 1158 17.1 + Prom 1095 - 1154 8.3 2 2 Op 1 . + CDS 1308 - 1646 267 ## EF0750 cell wall surface anchor family protein 3 2 Op 2 . + CDS 1646 - 2377 941 ## EF0751 hypothetical protein 4 2 Op 3 . + CDS 2394 - 3173 883 ## EF0752 hypothetical protein 5 2 Op 4 . + CDS 3193 - 5151 1782 ## EF0753 hypothetical protein + Prom 5158 - 5217 2.5 6 3 Op 1 . + CDS 5315 - 6055 964 ## EF0754 hypothetical protein 7 3 Op 2 . + CDS 6131 - 7225 925 ## EF0755 hypothetical protein + Prom 7326 - 7385 8.9 8 4 Op 1 . + CDS 7427 - 7876 380 ## EF0756 hypothetical protein 9 4 Op 2 . + CDS 7883 - 9328 871 ## EF0757 hypothetical protein + Prom 9333 - 9392 6.0 10 5 Op 1 . + CDS 9438 - 11342 2116 ## COG2217 Cation transport ATPase 11 5 Op 2 . + CDS 11378 - 11734 478 ## COG1285 Uncharacterized membrane protein + Prom 11764 - 11823 4.0 12 6 Tu 1 . + CDS 11888 - 12097 279 ## EF0759 SapB protein, putative + Term 12110 - 12150 8.6 - Term 12098 - 12138 8.6 13 7 Op 1 16/0.000 - CDS 12145 - 12882 296 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 14 7 Op 2 . - CDS 12884 - 15052 2500 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - Prom 15076 - 15135 5.3 + Prom 15120 - 15179 6.6 15 8 Op 1 7/0.000 + CDS 15331 - 17328 2237 ## COG0556 Helicase subunit of the DNA excision repair complex + Term 17340 - 17395 17.1 + Prom 17347 - 17406 2.0 16 8 Op 2 . + CDS 17446 - 20265 3148 ## COG0178 Excinuclease ATPase subunit + Term 20285 - 20327 8.0 + Prom 20299 - 20358 8.8 17 9 Tu 1 . + CDS 20438 - 21232 916 ## EF0764 hypothetical protein + Term 21267 - 21304 6.4 + Prom 21315 - 21374 6.1 18 10 Op 1 12/0.000 + CDS 21398 - 22285 1143 ## COG1660 Predicted P-loop-containing kinase 19 10 Op 2 12/0.000 + CDS 22285 - 23280 1091 ## COG0391 Uncharacterized conserved protein 20 10 Op 3 . + CDS 23314 - 24249 1114 ## COG1481 Uncharacterized protein conserved in bacteria + Term 24263 - 24319 7.6 + Prom 24370 - 24429 3.8 21 11 Tu 1 . + CDS 24483 - 25406 1216 ## EF0769 hypothetical protein + Term 25416 - 25469 12.2 + Prom 25429 - 25488 9.6 22 12 Tu 1 . + CDS 25520 - 26038 628 ## COG1651 Protein-disulfide isomerase + Term 26046 - 26082 8.2 - Term 26024 - 26079 18.2 23 13 Tu 1 . - CDS 26083 - 26676 855 ## COG0740 Protease subunit of ATP-dependent Clp proteases - Prom 26706 - 26765 6.7 + Prom 26784 - 26843 6.0 24 14 Tu 1 . + CDS 26872 - 27390 568 ## EF0773 hypothetical protein + Term 27396 - 27446 6.6 25 15 Tu 1 . - CDS 27411 - 27815 520 ## EF0774 hypothetical protein - Prom 27842 - 27901 6.2 26 16 Tu 1 . + CDS 28280 - 29950 2052 ## EF0775 anchor protein, putative + Prom 29954 - 30013 3.2 27 17 Op 1 . + CDS 30087 - 30653 521 ## EF0775 anchor protein, putative 28 17 Op 2 . + CDS 30678 - 31061 356 ## EF0776 hypothetical protein + Term 31074 - 31126 17.0 + Prom 31133 - 31192 7.9 29 18 Op 1 . + CDS 31235 - 31744 495 ## EF0778 hypothetical protein 30 18 Op 2 . + CDS 31774 - 33561 1675 ## COG0584 Glycerophosphoryl diester phosphodiesterase 31 18 Op 3 . + CDS 33587 - 33994 413 ## EF0780 MutT/NUDIX family protein + Prom 34053 - 34112 6.7 32 19 Tu 1 . + CDS 34228 - 34428 380 ## COG1278 Cold shock proteins + Term 34437 - 34477 7.5 - TRNA 35042 - 35113 57.5 # Arg CCG 0 0 33 20 Tu 1 . + CDS 35172 - 36503 1653 ## COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog + Term 36505 - 36557 15.1 + Prom 36588 - 36647 4.2 34 21 Op 1 . + CDS 36704 - 38581 1797 ## COG1835 Predicted acyltransferases + Term 38585 - 38633 9.1 + Prom 38650 - 38709 8.2 35 21 Op 2 4/0.000 + CDS 38797 - 39981 1775 ## COG0192 S-adenosylmethionine synthetase + Term 39987 - 40053 20.4 + Prom 40022 - 40081 10.5 36 22 Op 1 . + CDS 40151 - 41617 1812 ## COG0477 Permeases of the major facilitator superfamily 37 22 Op 2 . + CDS 41656 - 42447 1006 ## COG0627 Predicted esterase + Term 42483 - 42534 20.1 - Term 42465 - 42522 10.1 38 23 Tu 1 . - CDS 42528 - 43190 702 ## EF0787 TetR family transcriptional regulator - Prom 43321 - 43380 8.8 + Prom 43338 - 43397 3.4 39 24 Op 1 35/0.000 + CDS 43444 - 45159 197 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 40 24 Op 2 . + CDS 45159 - 46928 169 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 + Term 46932 - 46984 8.4 41 25 Op 1 . + CDS 47006 - 47275 74 ## gi|293385215|ref|ZP_06631032.1| ABC transporter, permease protein 42 25 Op 2 1/0.286 + CDS 47338 - 47943 714 ## COG1309 Transcriptional regulator + Term 47993 - 48056 15.6 + Prom 47995 - 48054 7.6 43 26 Op 1 36/0.000 + CDS 48081 - 49160 1271 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 44 26 Op 2 . + CDS 49165 - 49833 256 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) + Term 49848 - 49902 13.2 - Term 49836 - 49890 17.0 45 27 Op 1 6/0.000 - CDS 49891 - 50454 556 ## COG0500 SAM-dependent methyltransferases 46 27 Op 2 1/0.286 - CDS 50454 - 51422 845 ## COG1242 Predicted Fe-S oxidoreductase 47 27 Op 3 . - CDS 51438 - 52088 669 ## COG0671 Membrane-associated phospholipid phosphatase - Prom 52118 - 52177 7.7 - Term 52180 - 52243 10.8 48 28 Op 1 . - CDS 52256 - 53281 1083 ## EF0797 hypothetical protein 49 28 Op 2 . - CDS 53281 - 53940 681 ## EF0798 hypothetical protein - Prom 54185 - 54244 6.7 + Prom 54135 - 54194 8.4 50 29 Tu 1 . + CDS 54257 - 56266 2141 ## COG1705 Muramidase (flagellum-specific) + Term 56471 - 56517 4.0 + Prom 56561 - 56620 5.8 51 30 Tu 1 . + CDS 56670 - 59084 3109 ## COG0495 Leucyl-tRNA synthetase + Term 59099 - 59156 4.1 - Term 59096 - 59135 3.6 52 31 Op 1 . - CDS 59139 - 59363 245 ## EF0802 hypothetical protein - Prom 59394 - 59453 3.7 53 31 Op 2 . - CDS 59460 - 59903 426 ## EF0803 hypothetical protein - Prom 59997 - 60056 7.8 - Term 60023 - 60070 10.5 54 32 Op 1 16/0.000 - CDS 60079 - 60909 836 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 55 32 Op 2 34/0.000 - CDS 60923 - 61558 390 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 56 32 Op 3 . - CDS 61571 - 62212 709 ## COG0765 ABC-type amino acid transport system, permease component - Prom 62313 - 62372 3.7 + Prom 62956 - 63015 3.6 57 33 Tu 1 . + CDS 63046 - 64677 1927 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Prom 64679 - 64738 5.3 58 34 Tu 1 . + CDS 64784 - 65032 367 ## COG2261 Predicted membrane protein + Term 65044 - 65095 8.6 - Term 65037 - 65077 4.1 59 35 Tu 1 . - CDS 65098 - 65421 468 ## EF0819 hypothetical protein - Prom 65458 - 65517 6.9 - Term 65584 - 65634 17.8 60 36 Tu 1 . - CDS 65673 - 66281 1003 ## PROTEIN SUPPORTED gi|229546665|ref|ZP_04435390.1| 50S ribosomal protein L25/general stress protein Ctc - Prom 66507 - 66566 6.2 61 37 Op 1 . + CDS 66612 - 67394 733 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 62 37 Op 2 . + CDS 67391 - 68071 765 ## COG1011 Predicted hydrolase (HAD superfamily) + Term 68076 - 68113 6.6 - Term 68064 - 68101 6.6 63 38 Tu 1 . - CDS 68107 - 68562 557 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 68680 - 68739 6.5 + Prom 68576 - 68635 4.2 64 39 Tu 1 . + CDS 68737 - 69366 831 ## COG0572 Uridine kinase + Term 69373 - 69425 7.3 + Prom 69450 - 69509 6.7 65 40 Tu 1 . + CDS 69535 - 69876 310 ## COG2337 Growth inhibitor + Term 69889 - 69925 4.3 + Prom 69899 - 69958 2.5 66 41 Tu 1 . + CDS 69978 - 70943 1070 ## COG0673 Predicted dehydrogenases and related proteins + Term 71107 - 71150 4.4 + Prom 71180 - 71239 4.9 67 42 Op 1 . + CDS 71314 - 73233 1674 ## COG3711 Transcriptional antiterminator 68 42 Op 2 . + CDS 73199 - 73522 530 ## EF0829 hypothetical protein 69 42 Op 3 . + CDS 73537 - 73893 578 ## EF0830 hypothetical protein 70 42 Op 4 . + CDS 73924 - 74307 443 ## EF0831 hypothetical protein 71 42 Op 5 . + CDS 74295 - 75074 1067 ## EF0832 hypothetical protein 72 42 Op 6 . + CDS 75094 - 75789 1086 ## EF0833 hypothetical protein + Term 75790 - 75825 -0.8 + Prom 75818 - 75877 9.9 73 43 Op 1 . + CDS 75920 - 77233 1440 ## COG1455 Phosphotransferase system cellobiose-specific component IIC + Term 77243 - 77285 5.0 74 43 Op 2 . + CDS 77310 - 77558 142 ## EF0835 hypothetical protein 75 43 Op 3 . + CDS 77567 - 78655 1313 ## COG3589 Uncharacterized conserved protein 76 43 Op 4 . + CDS 78664 - 79773 1303 ## COG3964 Predicted amidohydrolase Predicted protein(s) >gi|307679040|gb|GL456757.1| GENE 1 134 - 1084 1398 316 aa, chain + ## HITS:1 COG:SA2481 KEGG:ns NR:ns ## COG: SA2481 COG1054 # Protein_GI_number: 15928275 # Func_class: R General function prediction only # Function: Predicted sulfurtransferase # Organism: Staphylococcus aureus N315 # 1 308 1 308 318 494 75.0 1e-140 MKYQVLLYYKYTTIEDPEAFAKEHLAFCKSLNLKGRILVATEGINGTLSGTVEETEKYME AMQADERFKDTFFKIDPAEEMAFRKMFVRPRSELVALNLEEDVDPLETTGKYLEPAEFKE ALLDEDTVVIDARNDYEYDLGHFRGAVRPDIRSFRELPQWIRENKEQFMDKKIVTYCTGG IRCEKFSGWLLKEGFEDVAQLHGGIANYGKNPETRGELWDGKMYVFDDRISVEINHVDKK VIGKDWFDGTPCERYINCANPECNRQILTSEENEHKHLGGCSLECSQHPANRYVKKYNLT EAEVAERLALLEAVEV >gi|307679040|gb|GL456757.1| GENE 2 1308 - 1646 267 112 aa, chain + ## HITS:1 COG:no KEGG:EF0750 NR:ns ## KEGG: EF0750 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 112 1 112 112 192 96.0 4e-48 MKIIKRFSLVCLGLLIIGLQTKSVMAEENNYESNGQASFYGTYVYENEKESNDIAYTQQS EEQGRNNLTASGQAVLPKTGESENPLYSLIGVSLLGVVIYLINKMKREKELI >gi|307679040|gb|GL456757.1| GENE 3 1646 - 2377 941 243 aa, chain + ## HITS:1 COG:no KEGG:EF0751 NR:ns ## KEGG: EF0751 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 243 1 243 243 423 100.0 1e-117 MKKTVLLTSATILLGVGFQAINASAAETFPKEYNTEGTITFEAGDNEITPPVDPENPDPT DPVDPIDPPGPGTGGALSIDYGSKFKFGTQKISTADQTYYAAPDEMKDGSKKPTYVQVTD KRGTLAGWKLTLSQPEQFKTATGEELVGAQLTFTKAEAASMVDEKYKPTEVSSTISLTPG VNNNLAMNAKKETGVGTWVYRFGSNEATNKEAVQLFVPGKSVKLAQQYSTKLVWALEDTP ANN >gi|307679040|gb|GL456757.1| GENE 4 2394 - 3173 883 259 aa, chain + ## HITS:1 COG:no KEGG:EF0752 NR:ns ## KEGG: EF0752 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 259 1 259 259 455 99.0 1e-127 MKKQFTGIVLCSTFAVAGWSLQAKAEEPKEYRSNGLVEFIPNVDPTEPVDPENPDPEKPV KPIDPTDPEGPNPGTQGPLSIDYASSFDFGKNRISNKDQVYFARAQQYQENQKETPNFVQ ISDNRGTNSGWSLTVTQKEQFKATKATLNSQLTGAQISLANPTVNSNAQNVEKPEATNKI ALVPGTASLVAAAKQGTGAGTWATYWGKVEVVAERDETNTVHNVNVTKDVALSVPGSTPK DAVKYQTKLLWTLTDVPGI >gi|307679040|gb|GL456757.1| GENE 5 3193 - 5151 1782 652 aa, chain + ## HITS:1 COG:no KEGG:EF0753 NR:ns ## KEGG: EF0753 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 652 1 652 699 1177 98.0 0 MRNKQSLVFLASSLFLLLLAPITSEAISNPSTNINEVNREIVEESANDQATSAASHSETL EQESSLGTTTTTDNHPAETDQSTATLEPSKQQKDDDNSATESAIVEPQPRMLAAPYAASL PDDPNIIPIDKVFQEPIGNATSILEGGKLLQLNPAVKSQKGAIWSKKPISLLSDFTFKSY LYLGNEYANAGDGMTFTLTNDPRMSTTPQEVIGSPGMGIGAYSTKAGQPYVRNALSIEFD TYKNTGSSNRMDREISQDKGNGHLAFVTPKANNNSYTGEHSGVTVAPTYLSNGTWRMLTV HWNAAAKALTYDLEGVGTNTYVVSDLNAQFGATTVYWGFTSSTGGKYQENALAMTQIPTN VTSQAALSVNGQEFSSAVEAVKNDQVRLRNTLNIDNDFIEDRQPQVSIDLPDELAYEENS LTIDGKKVAAKDLTQTGNHLTIALNDYLVLKKDMIIELKTTLQDNTPEKVLTMNFDYYEE GTLLQKSNNVTITIPKPTEKTVTVFYKDAEGKDIAPPKSVTGKIGAPYQEKPLDISGYVF TKDSGNAEGTMTEETKDIYFYYRLGELYFKEAPKQITFGTEKIRNQPLIKLGHPTEGLKV VDERNANNWRLQLKQTQPLTNDSIVMPDVFSFVSTAGSSQITNEAITLLESN >gi|307679040|gb|GL456757.1| GENE 6 5315 - 6055 964 246 aa, chain + ## HITS:1 COG:no KEGG:EF0754 NR:ns ## KEGG: EF0754 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 246 1 246 246 390 99.0 1e-107 MKKVTTVCLSTFILGSLGMTSQTFAEDGGSYTSNGIVEFTPSEEPTNPVDPTDPTNPVDP IDPTDPEGPNPGTNGPLSIDYASSLDFGVQKITSKDQTYFAATQKYKTVGATDEVKEGPN YVQVTDNRGTEAGWSLKVKQEGQFKSTSGKELTGAAITFKNGNVVTASDSGKPTGPATIT LNSDGSQSDVMSAAKGNGAGTYLFDWGTDATTAAKSIELTVPGSTTKYAEKYATKLTWTL TDAPGN >gi|307679040|gb|GL456757.1| GENE 7 6131 - 7225 925 364 aa, chain + ## HITS:1 COG:no KEGG:EF0755 NR:ns ## KEGG: EF0755 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 364 1 364 364 572 99.0 1e-161 MNRKKQRFLFFPILLILLALVPSNGFASEFNFAVTPIPSEKQVDKEKTYFDLLLAPNEET ELKVNLRNDTDKEVKVGISINSAITNSNVIVEYGENKGKKDQSLAFDIKDYVQYPSSVRL KPKSEQTVSINVKMPNTPFDGVLASGITFKEETSDEGKRQDDKSQGLSIKNEYSYVVALL MQQNKKKVEPNLLLKKVSPGQINARNVILVNLQNDQKTYINQVAFSAEITKKGHEEVLYK EEKANMQIAPNTNFSVPIALKGQPLKPGDYHLSMTVVGNKDAAGSFKKSINNESISFRNQ WQFEKDFTINGKVAKELNEKDVTLKENHSNLYLMIGLLLLLIVILIITWLIWRKKKQEKN EREI >gi|307679040|gb|GL456757.1| GENE 8 7427 - 7876 380 149 aa, chain + ## HITS:1 COG:no KEGG:EF0756 NR:ns ## KEGG: EF0756 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 149 1 149 149 215 99.0 4e-55 MDKYKHLLLWSTLLLSFFQVTNVQAAEERNPIYNPTNPTEEIYPIENTGTPEKMEETNES TITSETQAEESSEDVSKKEVTTNNPKTNEERPSSKKSQHQVFFTDELFDASHITIVPNST GGAGTEGQNTFYLNFIRELVGTAIYGRKN >gi|307679040|gb|GL456757.1| GENE 9 7883 - 9328 871 481 aa, chain + ## HITS:1 COG:no KEGG:EF0757 NR:ns ## KEGG: EF0757 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 481 2 482 482 869 98.0 0 MNYEIFLNKEDQRSYSLLRHLEESPTLSGTFIALREELSMSNFLVKKTLEKLKADIDNLK LSDSLTLVVSDVDVTLEIDGNYSSKLLLTKYLTESLSFKLVLSYFRGNYSLTKFAECNHV STSVAYSTLQRLKKALKEYQIYFSKREIVGNQKAISFFLYKLFTLSNQPISELYSVKVYN EAKCVLQSVELNYTFTTYERRNFFHYLAIMINNEGRAVEGIDTRALNTFSEELIKKSQVE WALSSKSLTYTIVFFLYLHGKLEKKYVIHEDPMIESLTRVFIGSFEKAFNCLEESTRNTL EEGLAIIHFNVIYFPINMFDDFEMDLQFFKQTYPEFYFYLIEYIRWLTAKHKKIAKANHC LFFHYLLLLINHVPVHLIAEPAKVLIDFSYGKEYNQFIKKNLSVYVNLNVEIIDPLSDTL PDVVITNLNNLYQEEQSKVMVWLDPPRSIDWVNLTQSLLTIQEEKYQQQKESTKTSGDPI E >gi|307679040|gb|GL456757.1| GENE 10 9438 - 11342 2116 634 aa, chain + ## HITS:1 COG:lin0644 KEGG:ns NR:ns ## COG: lin0644 COG2217 # Protein_GI_number: 16799719 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Listeria innocua # 24 634 14 624 625 452 42.0 1e-126 MSKQTGAHTHEEKGKNVPVILFFTGLALFFIGLFLGNMLLVKNILFSLAAILAGYHIIGE GFGDTYRDTKNNRKFSPNIHLLMTLAAVGSALMGSFEESALLILIFAAAHFLEDYAQGKS QREITKLLNLNPTEARLITDDGSIQTVSVEQLKIGDRVQVLNGAQIPTDGVVIEGSTAVD ESSINGESIPKEKNSGDPVFGSTMNGSGTIVVEVTKDSSETVFAKIVQLVNQSQENQSEI ASKIKRFEPKYVTLVLAVFPLIVLGGALLFQLTWAESFYRGLVFLIAASPCALAASAVPA TLSGISNLAKQGVLFKGGSFLSNLAEVKALAFDKTGTLTKGKPEVTDYLFVDGLEDRQDE LVAVLTNMEKKSNHPLATAIVNRFEAETTALNLEVENIVGVGLVTTIVDTTFRIGKPSSF EQVPTIIEKQTTKLASEGKTVVYFAENEQVIGLVALMDVPNEEAMNAIHYFKSQNIETTM ITGDAKLTGEAVGRLVGVDQVFSNVLPEEKSAIVDQLKREVGMTGMVGDGINDAPALVNA DIGVAMGDGTDIAIDVADVVVMKNDLSKLGYAHRVSKRLNKIVQQNIIFSMLVVATLIIL NFLGIANIAFSVLIHEGSTLVVIFNGLRLLVNTK >gi|307679040|gb|GL456757.1| GENE 11 11378 - 11734 478 118 aa, chain + ## HITS:1 COG:BH3225 KEGG:ns NR:ns ## COG: BH3225 COG1285 # Protein_GI_number: 15615787 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Bacillus halodurans # 11 118 1 101 232 74 37.0 4e-14 MNSLKMIELSLTDVVIRMALAVVFGALIGLERSIKRKGFGISSNAILCLASCTISILQIQ SVDILVDVVKQNSALASIISMDITRYGAQVISGVGFLGAGIIVFRERKVSGLTTAVMM >gi|307679040|gb|GL456757.1| GENE 12 11888 - 12097 279 69 aa, chain + ## HITS:1 COG:no KEGG:EF0759 NR:ns ## KEGG: EF0759 # Name: not_defined # Def: SapB protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 69 171 239 239 129 100.0 6e-29 MIKESRLHEQLQASLEKGERLVELTLESEQEAVTAKISYVGKEDFWHSNLHHLLKEKGHV QSVSVTETI >gi|307679040|gb|GL456757.1| GENE 13 12145 - 12882 296 245 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 219 1 221 223 118 33 9e-26 MTEKILVEHLVKKYGDNTVLNDINVSINEGDVVCVIGPSGSGKSTFLRCLNQLEEASSGD IIIDGANLTDKNTDINQVRQHIGMVFQHFNLFPHLSILENIVLAPTDLGRLSKDEAEKKA LELLERVGLADKKDAYPDSLSGGQKQRVAIARALAMNPDIMLFDEPTSALDPEMVGDVLG VMKDLAKQGMTMVIVTHEMGFAKEVANRVMFIDGGNFLEDGSPEQVFENPQNPRTKDFLD KVLNI >gi|307679040|gb|GL456757.1| GENE 14 12884 - 15052 2500 722 aa, chain - ## HITS:1 COG:L165_1 KEGG:ns NR:ns ## COG: L165_1 COG0834 # Protein_GI_number: 15673741 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Lactococcus lactis # 1 521 1 507 509 453 45.0 1e-127 MKRKHFLLSFFVMMVTLLTFISSTSAHAEGKKYTIGTDLTFAPFEFQDSKGKYIGIDVDL LDAIAKDQGFEVDLKPLGFDSAVQAIQSKQIDGMIAGMSITDERKKSFDFSDPYFDSGLQ LAVKKGNDKIKSYDDLKGKTVAAKVGTESANFLEKNKEKYDYTIKNFDDATGLYKALENG EADAIVDDYPVLGYAVKNGQKLQLVGDKETGSSYGFAVKKGQNPELIKKFNAGLKNLKDN GTYDKILNNYLATGDETNTQDAGEQMKKITPKKEKYVIASDSTFAPFEFQNAQGDYVGID VDLVKRAAELQGFTVEFKFIGFSSAVQAVESGQADGMVAGMTITDDRKKAFDFSVPYFDS GIQIAVKKGNDKIKSYDDLKGKKVGVKIGTESADFLEKNKKKYDYSIKYLDTTDALYSAL EIGEVDAMMDDYPVIGYGVAQNQPLATPIPREKGGSYGFAVKKGQNPELLEMFNEGLKEM KRTGEYDKIIGTYVKDGNEAKEETADESTFVGFMQNNWKQLLHGLWMTILLTLISFVLAL IVGVIFGLFSVSPIKALRVLSTIYVDLIRGIPLMVLAFFIYFGLPGVLGFNIPVFIAGII TLTLNASAYISEIVRGGIKAVPVGQMEASRSLGLSYNRTMQKIILPQAIRIMIPSFINQF VISLKDTTILSAIGLIELLQTGKIIVARTLQSTMVYFVIALIYLILITSLTKLAKNLEKK VN >gi|307679040|gb|GL456757.1| GENE 15 15331 - 17328 2237 665 aa, chain + ## HITS:1 COG:SP1238 KEGG:ns NR:ns ## COG: SP1238 COG0556 # Protein_GI_number: 15901100 # Func_class: L Replication, recombination and repair # Function: Helicase subunit of the DNA excision repair complex # Organism: Streptococcus pneumoniae TIGR4 # 1 663 1 660 662 994 77.0 0 MIERETSNTFHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQE VNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI NDEIDKLRHSATSSLLERNDVIVVASVSCIFGLGDPREYSQQVVSLRVGMEMDRNELLKS LVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHALRVEFFGDEIDRIREVDALTGEIV GETEHVAIFPATHFVTNEEHMEHAISQIQEELEARLKVLRSENKLLEAQRLEQRTNYDIE MMREMGYTSGIENYSRHMDGRQEGEPPYTLLDFFPDDFLLVIDESHVTMPQIRGMYNGDR ARKQMLVDYGFRLPSALDNRPLRLEEFEQHVNQIVYVSATPGPYEMEQTETVVQQIIRPT GLLDPEVEIRPIMGQIDDLVGEIHERIEKDQRVFVTTLTKKMAEDLTDYFKELGLKVKYL HSDIKTLERTEIIRDLRLGEFDILIGINLLREGIDVPEVSLIAILDADKEGFLRSERSLV QTMGRAARNAEGKVIMYADKITDSMQRAMDETARRRAIQEAYNEEHGIEPKTIIKEIRDL ISISKTADKDETVVQLDKSYEDLSRQEKADLLMKLEREMKDAAKALDFETAATLRDTILE LKAAK >gi|307679040|gb|GL456757.1| GENE 16 17446 - 20265 3148 939 aa, chain + ## HITS:1 COG:SP0186 KEGG:ns NR:ns ## COG: SP0186 COG0178 # Protein_GI_number: 15900123 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Streptococcus pneumoniae TIGR4 # 4 935 3 937 943 1501 79.0 0 MANDKIVIHGARAHNLKNIDVTIPRDKMVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLS AYARQFLGQMDKPDVDSIDGLSPAISIDQKTTSKNPRSTVGTVTEINDYLRLLFARVGHP ICPNDHIEITSQSVEQMVDKVLELPERTKIQILAPVVVKKKGQHKKVFEMIQREGYVRMR VDGETYDVSEAPELEKNKKHDIAIVIDRIVVKEGIRSRLFDSFEAALRLAEGYAIVDVIG QEEMLFSEHYACPYCGFTVGELEPRLFSFNAPFGACPDCDGLGVKLEVDKDLVIPDPTKT LREGAIVPWNPISSQYYPQMLEQAATSFGIDMDTPFEELPADQQEIILNGSGEKNFHFHY ENDFGGVRDVEVPFEGILKNIKRRYHETNSDFTRDQMRLYMTELTCRSCQGYRLNPQALA VKINGTHIGEVSELAIKNAVQFFEGVSLSEQETTIARPILKEVEDRLTFLKNVGLDYLTL SRAAGTLSGGEAQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIDSLKKMRDLGNT LIVVEHDEDTMMASDYLIDVGPGAGHLGGEIVAAGTPEEVAKNPHSLTGQYLSGKKVIPV PKERRKGNGKAIKVTGASENNLKNVSVEFPLGEFVAVTGVSGSGKSTLVNQILKKALAQK LNRNSNKPGKHKSITGYEAIEKIVDIDQSPIGRTPRSNPATYTSVFDDIRDLFAQTNEAK VRGYKKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCHGKRYNSETLEVHYKG KNISDILDMTVEDAVEFFKHIPKIHRKLQTIVDVGLGYVTLGQPATTLSGGEAQRMKLAS ELHKNSNGKNFYILDEPTTGLHTDDIARLLLVLERLVEAGNTVLVIEHNLDVIKSADHVI DLGPEGGDGGGTIVATGTPEEVAKVKDSYTGYYLKRVLK >gi|307679040|gb|GL456757.1| GENE 17 20438 - 21232 916 264 aa, chain + ## HITS:1 COG:no KEGG:EF0764 NR:ns ## KEGG: EF0764 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 188 1 188 188 316 100.0 6e-85 MKNKKITTSLLTAGMVLAIGITPFVHSNTMEAATLISQSDHEKVMSFTKKDLKEATGIQL EPATVQAVHQELKQQITWETLGYSTIDAQNIATRFTQNTYQALGILTDIANHSDLQLKVI TINNPYLATAKIGTFKWETVTPEVGGDHETADNELTTPTPTVASLQEIDVEIEYDENEIE FTYEIKSNGTIEATYEDESADLELEGKAAQDKIMTLLDGLSIKTATNEQIKEHITKKLAV NEQVKQFEFEANFTDKTEIEFVLK >gi|307679040|gb|GL456757.1| GENE 18 21398 - 22285 1143 295 aa, chain + ## HITS:1 COG:lin2617 KEGG:ns NR:ns ## COG: lin2617 COG1660 # Protein_GI_number: 16801679 # Func_class: R General function prediction only # Function: Predicted P-loop-containing kinase # Organism: Listeria innocua # 3 290 4 290 291 370 62.0 1e-102 MPENLQLVIITGMSGAGKTVAVQSFEDMGYFCIDNLPPSLIPKFWELIKESGKVTKIALV IDLRSRTFFREIQDMLVELENTNFIDTTILFLDATDEELVSRYKETRRAHPMAMDGLVTE GIRKERAMLEEIKADAQLVIDTTDLSPRQLRERLNKELATRETHEFRVEMVSFGFKYGLP IDADIDMDVRFLPNPHYIDELRPLTGMDQPVYDYVMGFPETDEFYTKFIDLLRTVLPGYK KEGKSSVTIAIGCTGGQHRSVALTERVGAELKEEDYHVNITHRDRLKRKETVNRS >gi|307679040|gb|GL456757.1| GENE 19 22285 - 23280 1091 331 aa, chain + ## HITS:1 COG:SP1565 KEGG:ns NR:ns ## COG: SP1565 COG0391 # Protein_GI_number: 15901408 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 6 326 1 321 325 428 64.0 1e-120 MKTYRIRKPKIVVVGGGTGLPVILKSLRNQSVDITAVVTVADDGGSSGELRSSINNMTPP GDLRNVLVALSDMPQLYEDIFQYRFDKSDSHFANHAIGNLIIAAVSEMRGSTYEAIQLLS KMMHVDGRIYPSSERPLTLHAVFKDGSVAVGESKIALDRKTIDHVFVTNTHGEEQPRAAR KVVKAIEEADMVVLGPGSLFTSILPNLVITEIGEAIKQTAAEVVYICNIMTQKGETEHFT DADHVRVLNEHLQAQFVDTVLVNTEKVPENYMDPEIYDEYLVQVKHDFQGLREEGCRVIS TDFLELRDGGVFHDGEKVVEELFRIVFGTKY >gi|307679040|gb|GL456757.1| GENE 20 23314 - 24249 1114 311 aa, chain + ## HITS:1 COG:lin2615 KEGG:ns NR:ns ## COG: lin2615 COG1481 # Protein_GI_number: 16801677 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 307 1 308 323 376 64.0 1e-104 MSFASDVKKELTGLEVHREHAKAELAALIRMNGSLSLVNQQFVLNVQTENAAIARRMYSL LKDHYHAQAELLVRKKMKLKKNNVYIVRLKQDTQKILADLDIMDGVVFNGNVSNEIMGNA QKMRSYLRGAFMASGSVNNPETSRYHLEIFSIYEEHNNDICKMLNYYDLNARTLGRRNGY ICYLKGAEKIADFLTLIGATNSMLKFEDVRIVRDMRNSVNRLVNCETANLNKTIDAASKQ IENIQFIESTVGLTSLPEKLQEIAELRLEYPEVSLKELGEMIPSGAISKSGINHRIRKIN EFAEKLREKSA >gi|307679040|gb|GL456757.1| GENE 21 24483 - 25406 1216 307 aa, chain + ## HITS:1 COG:no KEGG:EF0769 NR:ns ## KEGG: EF0769 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 307 1 307 307 569 100.0 1e-161 MVQRLISANASEIKRMSKEELFQSIKASEGRVILSENVVVHPSVAGDITCAEMSKAYGAD MILLNVFDVNQPIVVAAYEGQYTAETCVPNDEVVHRLKELVGLPIGMNVEPVDENLDLAS TRVSIEPGRKASAATFKKANELGLDFILLTGNPGTGVTNDLIAKNVALAKKHFDGIIIAG KMHSSGVDEPVVSLKSAEQFIEAGADIVLVPAVGTVWGIDDQQVKEVVDFAHSKGKLVMS AIGTSQESAQPEVIQAIGIRNKILGVDIQHIGDANMGLVGIENIKELSDAIRGKRHTVAR MARSINR >gi|307679040|gb|GL456757.1| GENE 22 25520 - 26038 628 172 aa, chain + ## HITS:1 COG:lin1051 KEGG:ns NR:ns ## COG: lin1051 COG1651 # Protein_GI_number: 16800120 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Protein-disulfide isomerase # Organism: Listeria innocua # 1 171 1 171 176 203 57.0 1e-52 MDISVIDATKVNTETGLHIGESNAPVKMIEFINVRCPYCRKWFEESKELLAQSVKSGKVE RIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQDEWGNLTLEEVATYAEKN LGLKEQKDATLVSAVIAEANAAHIQFVPTIIIGEHIFDESVTEEELRGYIEK >gi|307679040|gb|GL456757.1| GENE 23 26083 - 26676 855 197 aa, chain - ## HITS:1 COG:lin2612 KEGG:ns NR:ns ## COG: lin2612 COG0740 # Protein_GI_number: 16801674 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Listeria innocua # 1 196 1 196 198 316 81.0 2e-86 MNLIPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPIDDNVANSVIAQLLFLDAQDSEKDI YLYINSPGGSVSAGLAIFDTMNFVKADVQTIVLGMAASMGSFLLTAGQKGKRFALPNAEI MIHQPLGGAQGQATEIEIAARHILDTRQRLNSILAERTGQPIEVIERDTDRDNYMTAEQA KEYGLIDEVMENSSALN >gi|307679040|gb|GL456757.1| GENE 24 26872 - 27390 568 172 aa, chain + ## HITS:1 COG:no KEGG:EF0773 NR:ns ## KEGG: EF0773 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 172 1 172 172 308 100.0 5e-83 MFVFIAGMVGVIVGALIVTASAALHSSYKERKEVRYRELEHLVKEIESLNLLNKKVKEIL QKRELYIDRSIEYLSMDDCFISIDDFIYLESFSAQNNFYLPTYLIEEFFKKIAHRKVILT ASEVAEMGGHTYKGGRVILENFSDEILAIIEDKKRKMQRLSNEPLHYFKAIK >gi|307679040|gb|GL456757.1| GENE 25 27411 - 27815 520 134 aa, chain - ## HITS:1 COG:no KEGG:EF0774 NR:ns ## KEGG: EF0774 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 134 1 134 134 244 99.0 1e-63 MNEWPHQLMTLLTPLFELCILGLNVFSIIVLVWGVCLAGKDFIKSERQNQSRFTLTKMNT FIKNFLGSYILLSLEILIAADIIESIVKPTFQDILKLATLVIIRTVISYFLHKEIEDTMT DMEQQEKEPDTPKN >gi|307679040|gb|GL456757.1| GENE 26 28280 - 29950 2052 556 aa, chain + ## HITS:1 COG:no KEGG:EF0775 NR:ns ## KEGG: EF0775 # Name: not_defined # Def: anchor protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 555 1 555 962 945 96.0 0 MFKKATKLLSTMVIVAGTVVGNFSPTLALAEGVVKAGDTEGMTNTVKVKDDSLADCKRIL EGQAAFPVQAGETEPVDLVVVEDASGSFSDNFPHVRQAIDEVVQGLSDQDRVMLASYRGG KQFIFPDGKVKINSADYDMNVRVDTQLTHDKSQFVSGFGDVRTYGGTPTASGLKLALDTY NQTHGDLTNRKTYFLLVTDGVANTRLDGYLHKTNTNDSINEYPDPRHPFQVSVEYSNDYQ GAAAEVLALNQEITNQGYEMINAYWESVESLSSVNSYFDKYKTEVGPFVKQELQQGSSTP EDFITSQSIDDFTTQLKQIVKDRLAQSTPATASLTIANQFDIQSATATDDAGNDVPVQIN GQTISATSTEGYVGNITIHYEVKENTAIDAATLVSSGTMNQGTIAKEFPEATIPKNDNAH ACDVTPEDPTITKDIENHEHLDLTNREDSFDWHVKTAFGNETSTWQQASLVDDINQLLDI QKVVVTDENGKDVTANGKVTQENNKVTFEMNKKDDSYDYLSGHTYTMTITTKIKTDATDE ELAPYIEQGGIPNLAS >gi|307679040|gb|GL456757.1| GENE 27 30087 - 30653 521 188 aa, chain + ## HITS:1 COG:no KEGG:EF0775 NR:ns ## KEGG: EF0775 # Name: not_defined # Def: anchor protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 188 775 962 962 266 96.0 4e-70 MVDDINKVLDIADVKVTDENGKDVTANGIVTQENNKVTFTMNKKDDSYSYLAGHIYNMTI TTKIKADATDEELAPYIEQGGIPNQADLNFGNEGDVLHSNKPTVTPPAPTPEDPKKPEPK QPLKPKKPLTPTNHQAPTNPVNFGKSASKGIHLPMTNSTVNPLYMIAGLIVLIVAISFGV TKNKKRKN >gi|307679040|gb|GL456757.1| GENE 28 30678 - 31061 356 127 aa, chain + ## HITS:1 COG:no KEGG:EF0776 NR:ns ## KEGG: EF0776 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 127 1 127 127 204 100.0 6e-52 MNKKISFSLLILLLSLLVGFTFIPHKKELSFNEYQEKKHSGETFYVVLKKKNCSDCQDFE KLLQAPKQVYYVELTNKETMKEWSTFIRENKVLHVPSMFKIDNGHLKKIDGEGDANQLFA NYQKITK >gi|307679040|gb|GL456757.1| GENE 29 31235 - 31744 495 169 aa, chain + ## HITS:1 COG:no KEGG:EF0778 NR:ns ## KEGG: EF0778 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 169 1 169 169 162 98.0 6e-39 MIELILLLSVILLGLLIGNKRVDKWLFLKALLLFSVMLSVSILISVAMYLLLTIGVANVI GQRLESLFLLGIVVIISTSLLLYFLLNLTTKKIVLPIALMKIIEYYIQWVLIYVTIYQVI FDQFIVSSEVKNTLQGTIDEPVAIIIVILPSFISIWIAVVLFRIRMEEL >gi|307679040|gb|GL456757.1| GENE 30 31774 - 33561 1675 595 aa, chain + ## HITS:1 COG:L58914_2 KEGG:ns NR:ns ## COG: L58914_2 COG0584 # Protein_GI_number: 15673979 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Lactococcus lactis # 344 583 1 240 249 269 56.0 9e-72 MSAWQTFKNGTRQFFKDILQYLWLFFTLNVLLLLVGGAFSWATSNALKTQGIPYLSFNNL NLLLEKPLALVLLILLLLLFLGAVFYQFTFLLLGIFQIRQDHRFHFKGVTKASFKVLKKQ GARSWLFFFGYFVVIVPFGNLIFQSNLLTKFVIPDFIVEFLSQRIPYLVGLLAFGLLVWY LAIRFIYTLPLMILERKKAGEAVKASWSMTNKRLWFIICNIAFVTIAVFVSTYVIYVLLY LLQLKLDTLSDTISLLGGILNLTVVQFLQFVSNAWLSVLLINFLYTQLNVLAETTTKVAF DKETKRNKLVTIGMGLGLFTIFGGYIIFNAVYLTGLLESKPLIISHRGVTNSNGVQNTIP AMERTIKFKPDYIEIDVQETKDHQFVVMHDANLQELAGVDGTPQEFTLAELTKMTVKENG QEAPIASFDDYLAKANQAKQKLLVEIKTSKQDSQGALSNFIEKYERPLIKNNHQVQSLDY NVIKAFKKAKSKVKVSFILPYNFTFPETQADLYTMEATTLNDTFILKADQQKKAVYAWTV NDSEVLSKMLFIDVAGVITDDLELVNEEVNDFEKNPSYADRILHYIFMLPSVASQ >gi|307679040|gb|GL456757.1| GENE 31 33587 - 33994 413 135 aa, chain + ## HITS:1 COG:no KEGG:EF0780 NR:ns ## KEGG: EF0780 # Name: not_defined # Def: MutT/NUDIX family protein # Organism: E.faecalis # Pathway: not_defined # 1 135 1 135 135 259 98.0 3e-68 MKKEFSRVLLKNQYDEILILKDRPDTWNFPGGKQELGESALECAIREMKEELAVEITELE EIFTGPLVFDSIVWQGHFYFAKQVQGKVTLNEPNKIKGVQFIKRFEEVNFSPGLAPLFDY LARSDYLKLNKTNWK >gi|307679040|gb|GL456757.1| GENE 32 34228 - 34428 380 66 aa, chain + ## HITS:1 COG:L117090 KEGG:ns NR:ns ## COG: L117090 COG1278 # Protein_GI_number: 15672511 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Lactococcus lactis # 1 66 1 66 66 97 81.0 4e-21 MNNGTVKWFNADKGFGFITGEDGNDVFAHFSAIQSDGFKTLDEGQAVTFDTEEGPRGLQA TNIVKA >gi|307679040|gb|GL456757.1| GENE 33 35172 - 36503 1653 443 aa, chain + ## HITS:1 COG:lin2555 KEGG:ns NR:ns ## COG: lin2555 COG1508 # Protein_GI_number: 16801617 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog # Organism: Listeria innocua # 16 442 18 447 447 331 42.0 2e-90 MKFEQRMSQQQKQVQKLAMTQQLQQSIQILQFNTEELAAFVEAKALENPLIDLQVDTQYT TDFPITSRSYTNQDEENNYMNQIPDYHLSLFESLIDQIHLNYRDTYLRTLVLFLVEYIDV NGYLKISLEEAAEKTEASAIQMLDALTLLQQLDPAGVGARNLQECLMLQTERDDTAPNLA YILLEEEFDALVSRKWGPLAKKFGIELAEIQLIFDYIQTLSPAPGNIFDATEELYIRPDL TVRIKEDRIVVISNKAGRPTLNFQENYFKRMQETDDKEVQEYIKDKKNEFEWLERAVNQR GDTILRVGQEIVRRQEAFFLEADRPLKPMTLKEIADALSIHESTVSRAVNGKYLETTFGV FELRSFFSTSILSSEEDGEDVSTTMVKKQLQKLIDQEVKSKPLSDQKLVERLKDSGMEIS RRTVAKYREALGIPSSSKRKRYE >gi|307679040|gb|GL456757.1| GENE 34 36704 - 38581 1797 625 aa, chain + ## HITS:1 COG:L158566 KEGG:ns NR:ns ## COG: L158566 COG1835 # Protein_GI_number: 15674089 # Func_class: I Lipid transport and metabolism # Function: Predicted acyltransferases # Organism: Lactococcus lactis # 10 623 2 600 605 460 41.0 1e-129 MNQTANSKKKRYITGFDGIRTIAVIGVILYHLFPQVMRGGYLGVPIFFVVSGYLINDLLR QEWAENQTIDLKGFYVRRMKRLYPALIVMLLSAVSYITLFQQDLLNNIRSVVASSVFYYN NWWQIFKGFSYFDGFATQSPFVHIWSLAVEAQNYLIWPLLFILLERFVRKRGRIFSLVLI GALISVTLMAVLYVPGADPTRVYYGTDTRVFSILLGSALAYVWPSTRLKEEIPEASKKIL NGAGLSALVLLVLAFLTLSDHTNFVYYGGMFLISLAATVLVAVTAHPGADMNRWLTNPVF TWIGKRSYGIYLYQFPIMIFYEAKIKTLSDHVFLHSLVEIALILVVSELSYRFIEHPLTR LSYKDVWTQFTEFLRKPWDLREKGTMAFMTVISVIAVFGLIVAPANAKSAQQEQLEKNIA KNQQKIEERKKEVQESGTKNSSTSTESSTKPSESQDVLPAQLTPEQVKKAQNLEITTIGD SVILDGASGLQDIFPKMIIDGEVGRQLYSSISLIGELDKKKMLKDTVLVSLGTNGPFTEA QFDEFMKALGNRKVYWINVRVPTRRWQNQVNSLLSQMDKKYDNLTVIDWFNYSNAHDDWF YDDRVHPNVAGGEQYTHFIAEKILQ >gi|307679040|gb|GL456757.1| GENE 35 38797 - 39981 1775 394 aa, chain + ## HITS:1 COG:BS_metK KEGG:ns NR:ns ## COG: BS_metK COG0192 # Protein_GI_number: 16080107 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylmethionine synthetase # Organism: Bacillus subtilis # 4 389 5 394 400 594 77.0 1e-170 MTERHLFTSESVSEGHPDKVADQVSDAILDAILEKDPMARVACETSVTTGLVLVFGEIST TAYVDIQKIVRQTVKDIGYTRAKYGFDGETVAVLVAIDEQSPDIAQGVDAALEVRDQDEK DDIGAGDQGLMFGFAVDETPELMPLPIALSHRLVRRLAELRKEKVLPYLRPDAKSQVTVE YDDQGQPQRVDTIVISTQHDDETTLEQIEKDIKEQVINEVIPHELLDDETKYFINPTGRF VIGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDATKVDRSASYAARYIAKNIVAAGL AKKVEVQLAYAIGVAQPVSISINTFGTSALPESKLIEAVRKNFDLRPAGIIEMLDLRRPI YKQTAAYGHFGRTDIDLPWEQTDKVEALKASLAE >gi|307679040|gb|GL456757.1| GENE 36 40151 - 41617 1812 488 aa, chain + ## HITS:1 COG:lin0980 KEGG:ns NR:ns ## COG: lin0980 COG0477 # Protein_GI_number: 16800049 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 3 478 2 479 491 390 50.0 1e-108 MAKETNVKLVTVSVFVATFMTAIEGTIVSTAMPTIVGSLHGMEIMNWVFSIYLLTNAMLT PIYGKLADKIGRKPVFMIGIIIFILGSSLCGFAQDMLTLIIARAIQGVGAGAILPVALTI IADMYSLDKRAKILGLNSAAWGIASIFGPLAGGFIVDTVGWHWIFFINVPIGLVLLGLIS IFLVEPKRERTKMPMDILGSVTLMAVLLTLLLGFQMISDNGFTLVTFSCLSLSVLFFVAF VMIEKRAQDPVIDLHLFNQPTFVLVNLIAALISGFLMGIDVYIPMWMQGVLGKSAGIGGL VLAPMSLLWMAGSFIASSFMEKYAMKKVLTIGLSILLVGAIFLVVMPMAVPFWLFFVVSS VLGVGFGITITTTTVTAQSTVEPEKMGVATSFNTLVRTIGQTVMVSIFGVILNAGMFAKL EASALNVDADVMNQLVNPHTANLIPAALLKPLRGILYAGLHNVYLVGAGLVVVALLLNIF AKAQRAKV >gi|307679040|gb|GL456757.1| GENE 37 41656 - 42447 1006 263 aa, chain + ## HITS:1 COG:L12887 KEGG:ns NR:ns ## COG: L12887 COG0627 # Protein_GI_number: 15673753 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Lactococcus lactis # 1 261 1 249 258 202 43.0 4e-52 MAFLQANIYSNVLEMEMNVNVILPQETVKKVGTSTQAALTDIPVLYLLHGMGGNHSVWAR RTSIERYVADLGIAVIMPSTYLAWYTDTQYDMNYWTFISEELPKICHQLFPQLSTKREKT FAAGLSMGGYGALKLGLAKPESFAAVASLSGAVSLSSTSFGELLKVRKRSYWEGIFGPLD QIEGSIHDPLYLLQQLVESQTEMPQFYLCCGEQDMLLSANQQMAQALEQAQASYTFETGP GEHDWVFWDEWIQKALAWLPIPK >gi|307679040|gb|GL456757.1| GENE 38 42528 - 43190 702 220 aa, chain - ## HITS:1 COG:no KEGG:EF0787 NR:ns ## KEGG: EF0787 # Name: not_defined # Def: TetR family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 220 1 220 220 404 100.0 1e-111 MEPKLSKDTIIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAIYWYFKNKQALLQSMAEA IEEHFQEPALCGEWYSDLLAFMENYYDLYQQFPCAVAIEIQTVPAYPQRLRHLNQMMGIL REAGFSPEMTHLAVTSLQHLLFGMIMDATEEKQLVSQVLNGDDYLKEQVLHMKQYVSDNE LTYMEESIQFRHSIHQKSAFIQAVKTYLDGLQADNTSSSK >gi|307679040|gb|GL456757.1| GENE 39 43444 - 45159 197 571 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 346 551 21 223 305 80 28 3e-14 MDLIIQHAKKYKGSVVIALLAVIVMVVSALWQPKLLQQVLEAIMNDDSDKMKNLGIQLIA IAGLGLVAGVINTIFSAKVAQGVSADIREATFRKIQTFSFGNIEKFSAGNLVVRLTNDVT QIQNVIMIALQTLFRIPFLFIGSFILAMLTLPQLWWVIVALVIAVILISMLSFSQMGKHF MIIQNLIDKINGIAKENLLGIRVVKSFVQEKNQLSRFTKVSEELTTYNLIVGSLFAVMIP AFMLVANLAVVGSIFFVSNLVKDDPTLIGGVASFMNYLMQIMMAIIIGGMMMMMTSRAAV SIKRIKEVMETEPDVTYKKVPEQELIGSVEFDHVSFRYPGDEEDTLKDISFSIQPGEMIG IVGATGAGKSTLAQLIPRLFDPTEGKIEVGGVDLREVNEHSLRKTVSFVLQKAILFSGTI AQNLRHGKRDASEADMERASGIAQAKEFIEKLAEGYDAPVEERSNNFSGGQKQRLSITRG VIGEPKILILDDSTSALDARSERLVREALDKELKETTTIVIAQKISSVVHADRILVLDNG RLVGEGTHEELAATNPVYQEIYETQKGKEEA >gi|307679040|gb|GL456757.1| GENE 40 45159 - 46928 169 589 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 366 589 21 235 305 69 25 5e-11 MTDLIKASKFFYHYLKRYKVSFLFIFLAIFAATYLQVKAPQFVGEAIQELAKYAVNVMQG KDDKSAFVSVIWKLLIFYVLTSAASFIYSILFTQVVGKSTNRMRIGLFNKLEKLTIRFFD SHQDGEILSRFTSDLDNIQNSLNQALLQVLTNIALLVGVLIMMFRQNVELAWATIASTPI AILIAVFVISKARKYVDLQQDEVGKLNGYMDEKISGQRVIITNGLQEETIDGFLEQNEKV RAATYKGQVYSGLLFPMMQGMSLVNTAIVIFFGGWLAINGSVDRAAALGLVVMFVQYSQQ YYQPLMQISSGYSMIQLAVTGARRLNEMFDEPDEIRPENGEKLEEINKAVALNHVVFGYN PETPVLKDVSIHVDKGEMVALVGPTGSGKTTIMNLMNRFYDVNEGAVTFDGVDIREMDLD SLRSHVGIVLQESVLFSGTIRENIAFGKPEATDEEIVQAAKQANIHEFIVNLEQGYDTEI TEENNLFSTGQKQLVSIARTIITNPELLILDEATSNVDTVTEAKIQKAMDEAIKGRTSFV IAHRLKTILNADRIIVLRDGEVIEEGNHHELVEQDGFYAELYKNQFVFE >gi|307679040|gb|GL456757.1| GENE 41 47006 - 47275 74 89 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293385215|ref|ZP_06631032.1| ## NR: gi|293385215|ref|ZP_06631032.1| ABC transporter, permease protein [Enterococcus faecalis R712] ABC transporter, permease protein [Enterococcus faecalis S613] hypothetical protein HMPREF9492_01455 [Enterococcus faecalis DAPTO 512] hypothetical protein HMPREF9493_02871 [Enterococcus faecalis DAPTO 516] ABC transporter, permease protein [Enterococcus faecalis R712] ABC transporter, permease protein [Enterococcus faecalis S613] hypothetical protein HMPREF9492_01455 [Enterococcus faecalis DAPTO 512] hypothetical protein HMPREF9493_02871 [Enterococcus faecalis DAPTO 516] # 3 89 41 127 127 138 96.0 1e-31 MEKMRNVRQLRRTFLVLNTLFVLSVFRENRWTKSALLFWLLANSFLYGLQWLIYFGGEKG WLIHLQRWYYCAILLQIAGTLIVYFSFFV >gi|307679040|gb|GL456757.1| GENE 42 47338 - 47943 714 201 aa, chain + ## HITS:1 COG:lin2558 KEGG:ns NR:ns ## COG: lin2558 COG1309 # Protein_GI_number: 16801620 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 1 198 1 199 202 147 39.0 2e-35 MEKPNKRKADLERTRQIILSVASELFMTKGFKNTSTREIALKANITQPNLYHHFKNKKEL YLAVIEELTSRVQEELVPIISGNASVEEKLYQLIKVLLDEHPTNLFLMLNDMFQEMGPDY NRTLYQIFKKTYINNIAAIFESEPETNCLQEGISVDDATRFILYNVSALLSIEKTYQRKT VDDDVKKFIQFMLHGVLKSHK >gi|307679040|gb|GL456757.1| GENE 43 48081 - 49160 1271 359 aa, chain + ## HITS:1 COG:L130944 KEGG:ns NR:ns ## COG: L130944 COG0577 # Protein_GI_number: 15674237 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 1 358 2 357 357 285 47.0 8e-77 MFLGFNEMKYSKGRYVLVVLVMVLIAWLIFILSGLANGLAQGNRLAVDQWQANQVVLSKE ANSNLNVSVLDENVKETISGGKIAPIGQQSLAIRPADDKKAELTNVSLFGIEKESFLMPK VIEGNAFTDKNQVIASETLKNQGFKIGDKLTAGKYDEQLEIVGFISKSSYNIVPVIYTSL DTWRSIKYGDNPAMAKMVNGFIVRSKDNAEVKTTNKDSQVLSISDFIEKLPGYSAQNLTL DGMIYFLIVIAAFIIGIFIFVMTLQKTAMFGVLKVQGVPTSFLAKAVMLQTALLAVLGVA IGLALTGITVLFLPEAMPYATNGPRMILFSVLLILSALIGGAFSIRTIAKIDPLIAIGG >gi|307679040|gb|GL456757.1| GENE 44 49165 - 49833 256 222 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 201 1 199 223 103 34 4e-21 MANVLEMKNIYKKYGEKHTEVIALKELSFAVQPGEFVAVIGPSGSGKSTFLTIAAGLQAP TSGEVIVGGQSLNKLTKKQRLAQRFQKIGFILQSSNLVPFLTVEDQFHLIEKVDKSRKNS ELKEQLLETLGLKELRNSYPRDLSGGERQRVAIACALYHEPDVILADEPTASLDTEKAFD VVQLLAKEAKEKDKGIIMVTHDERLLKYCDRVVRIRDGELTE >gi|307679040|gb|GL456757.1| GENE 45 49891 - 50454 556 187 aa, chain - ## HITS:1 COG:BH3285 KEGG:ns NR:ns ## COG: BH3285 COG0500 # Protein_GI_number: 15615847 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Bacillus halodurans # 6 187 7 190 190 159 45.0 4e-39 MLQTALHFSHQLLKEVVEPGDFVIDATMGNGHDTAFLAELVGPSGEVFAFDIQKEALINT EQKLTELNLLPQTTLFPLGHEHLHAVLDEETEITAAIFNLGYLPKSNKEIITKPATTKQA LDGLLPHLVKGSRIILVVYYGHEGGSEELDLVTNYTQSLPQDVYSVLRYEFINQKNQPPV LFCIEKK >gi|307679040|gb|GL456757.1| GENE 46 50454 - 51422 845 322 aa, chain - ## HITS:1 COG:L142355 KEGG:ns NR:ns ## COG: L142355 COG1242 # Protein_GI_number: 15674248 # Func_class: R General function prediction only # Function: Predicted Fe-S oxidoreductase # Organism: Lactococcus lactis # 12 310 3 301 313 486 74.0 1e-137 MQIFPYSDDPNKRYHTWNYALRQQFGEKIFKVPIDGGFDCPNRDGTVAKGGCTFCSVSGS GDMIVAPSDPLPLQFQKEIQLMHQKWPTVDQYIVYFQNFTNTHAPVDVIRHRFEQVVNEK GVVGLSIGTRPDCLPDEVVNYLAELNERFYLWVELGLQTTFEETSTAINRAHDYQTYLDG VAKLRKHGIRVCTHLINGLPGETPAMMRENVRRTIQDSDIQGIKLHLLHLMTNTKMMRDY NEGHLQLMSKEAYVSVICDQLEMIPPEIVIHRLTGDAPFETIIGPMWSLKKWEVLNAIDA EMKRRNSYQGKYTVISGKEVFN >gi|307679040|gb|GL456757.1| GENE 47 51438 - 52088 669 216 aa, chain - ## HITS:1 COG:SP0489 KEGG:ns NR:ns ## COG: SP0489 COG0671 # Protein_GI_number: 15900403 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 216 1 216 216 132 38.0 6e-31 MKNKLYYQFAGSCFLLVFMFLGYVVRFYPTWLKGFDQTITSFVRRPFPQLNNFFIWYTKF ANSLTIIILAIVVIALFIVWKYYAEALWLFINTALIAGVGNSLLKLFFMRQRPTLEHLVT EHTYSFPSGHAVGSTLFYGTILLILPIFIKNKTVRLCVQILLGIGIFMIGVSRIYLGVHF PSDILGGFCLGLAWLLLSYPIYLEKRFVWRFQSKQR >gi|307679040|gb|GL456757.1| GENE 48 52256 - 53281 1083 341 aa, chain - ## HITS:1 COG:no KEGG:EF0797 NR:ns ## KEGG: EF0797 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 341 1 341 341 582 98.0 1e-165 MKKTTGILLSIAVLAMLIGGSGAVYYYKQAEKSVTPLKESYTLKNKQAGEELHLSLKGKG PYTIYKTDSNKMGLRSPNNAFYSKAEGTLNVKEEKNKITATINTTRTQNQPELSFFNIGI FSDFTPNVSVQIPNNVKKLVIDGSTHSQVSLNAFNVDELTTNLPNSYVSLSGVKAKKMTL NSSDGIYLSADTSAKKATVETTDGDITLDSAYFDEIKNTTISGDIRVQNARGNIQATTTD GDISVYDFKGEANFSSENGDFSLDMPAVPKKLTVALVHGDIYVNSGEILRNISIKGESKL GDVQLLNKERTSYKNGRADTEFNLSSEFGDITVDTPDDDNQ >gi|307679040|gb|GL456757.1| GENE 49 53281 - 53940 681 219 aa, chain - ## HITS:1 COG:no KEGG:EF0798 NR:ns ## KEGG: EF0798 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 219 1 219 219 433 100.0 1e-120 MNKEHFIIELKIYLKALNPKDQAIILAKYKALFDARVAEGETEEQVAKSLGKPRVIAEEI LKEQGIELTERKIENNGWQEIPAATPAYDHPYEEESEFYYDNDSPYYQRPQHRPLTRFFQ VLGIFCLNFFFMFWVILGIALMYVGCGIAGAATLFSPIYGIYSVITQANAASFFQLSMSL FLFGASIIGWLLFLPILKFSAHVFKRYFQWNIAVLRGDI >gi|307679040|gb|GL456757.1| GENE 50 54257 - 56266 2141 669 aa, chain + ## HITS:1 COG:L68758_1 KEGG:ns NR:ns ## COG: L68758_1 COG1705 # Protein_GI_number: 15672254 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Lactococcus lactis # 175 344 57 225 242 166 57.0 1e-40 MKKESMSRIERRKAQQRKKTPVQWKKSTTLFSSALIVSSVGTPVALLPVTAEATEEQPTN AEVAQAPTTETGLVETPTTETTPGTTEQPTTDSSTTTESTTESSKETPTTPSTEQPTVDS TTPVESGTTDSSVAEIAPVAPSTTESEAAPAVTPDDEVKVPEARVASAQTFSALSPTQSP SEFIAELARCAQPIAQANDLYASVMMAQAIVESGWGASTLSKAPNYNLFGIKGSYNGQSV YMDTWEYLNGKWLVKKEPFRKYPSYMESFQDNAHVLKTTSFQAGVYYYAGAWKSNTSSYR DATAWLTGRYATDPSYNAKLNNVITAYNLTQYDTPSSGGNTGGGTVNPGTGGSNNQSGTN TYYTVKSGDTLNKIAAQYGVSVANLRSWNGISGDLIFVGQKLIVKKGASGNTGGSNNGGS NNNQSGTNTYYTIKSGDTLNKIAAQYGVSVANLRSWNGISGDLIFAGQKIIVKKGTSGNT GGSSNGGSNNNQSGTNTYYTIKSGDTLNKISAQFGVSVANLQAWNNISGSLIFAGQKIIV KKGANSGSTNTNKPTNNGGGATTSYTIKSGDTLNKISAQFGVSVANLRSWNGIKGDLIFA GQTIIVKKGASAGGNASSTNSASGKRHTVKSGDSLWGLSMQYGISIQKIKQLNGLSGDTI YIGQTLKVG >gi|307679040|gb|GL456757.1| GENE 51 56670 - 59084 3109 804 aa, chain + ## HITS:1 COG:lin1769 KEGG:ns NR:ns ## COG: lin1769 COG0495 # Protein_GI_number: 16800837 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Leucyl-tRNA synthetase # Organism: Listeria innocua # 1 804 1 803 803 1270 75.0 0 MSYNHKEIEKKWQKYWAKNNCFNTLDDPNKEKFYALDMFPYPSGQGLHVGHPEGYTATDI LSRMKRAQGYNVLHPMGWDAFGLPAEQYALDTGNDPAEFTKKNIETFRRQINSLGFSYDW NREINTTDPEYYKWTQWIFTKLYEKGLAYEAEVAVNWVPELGTVISNEEVIDGKSERGGY DVVRRPMRQWMLKITAYADRLLEDLELVDWPESIKDMQRNWIGRSEGANVTFKVAGTEES FTVFTTRPDTLFGATYTVLAPELELVKKITTPEQTAAVEAYIEETSKKSDLNRTDLAKEK TGVFTGAYAINPVNGQEIPIWIGDYVLASYGTGAIMAVPAHDERDYEFAKTFGIDILPVI AGGDITTEAYTGDGPHINSDFLNGLNKAEAIAKMNEWLEENHVGKKEVSYRLRDWLFSRQ RYWGEPIPVIHWEDGTTTTVPESELPLRLPVTSDIRPSGTGESPLANIDEWVNVVDPETG MKGKRETNTMPQWAGSSWYYLRFIDPHNKNEIADFEKLKRWLPVDIYIGGAEHAVLHLLY ARFWHKFLYDIGVVPTKEPFQKLYNQGMILGENNEKMSKSRGNVVNPDDVVAKYGADTLR LYEMFMGPLDASIAWNENGLEGSRKFLDRVWRLIVDEEGKMRDRITTINDGRLTKVYHQT VKKVTEDMANLHFNTAISQLMVFVNEANKVDALPYEYVEGFVQLLAPIAPHIGEELWQIL GNEESLTYVPWPTYDEAALVEDEVEVVFQVNGKLRGKQNVARGLIKEELEQIAMNHEAVK EFIEGKTVRKVIAVPDKLVNIVAN >gi|307679040|gb|GL456757.1| GENE 52 59139 - 59363 245 74 aa, chain - ## HITS:1 COG:no KEGG:EF0802 NR:ns ## KEGG: EF0802 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 74 23 96 96 105 98.0 4e-22 MKKYRISLFLGLISLLLFMISILVGSTLSSDGLLKEPAFFCTPLGYFFLFIALLSVITIT CKEHMNQKGKTKQP >gi|307679040|gb|GL456757.1| GENE 53 59460 - 59903 426 147 aa, chain - ## HITS:1 COG:no KEGG:EF0803 NR:ns ## KEGG: EF0803 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 147 1 147 147 222 99.0 5e-57 MPTNKKEGMLFTTLMCFLMVFGMSTYNLLLHGEFSLYALSKGLLPGFIVAFILDVFIVGV LAKKIAFSLPFNKEKRLLLILTISSLMIIGMVTCMSLFGLLMEGQTLSLSAYFQAWGLNF IVALPYQLLIVGPFSRMILTNYQQRQT >gi|307679040|gb|GL456757.1| GENE 54 60079 - 60909 836 276 aa, chain - ## HITS:1 COG:SP1500 KEGG:ns NR:ns ## COG: SP1500 COG0834 # Protein_GI_number: 15901347 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Streptococcus pneumoniae TIGR4 # 3 269 2 269 278 287 56.0 2e-77 MKKKYSLALLVICCSLLLFAGCGKRKSNEDQWTRINEEKRIIIGLDDSFVPMGFQDKSGK IVGFDVDLANAVFKLYGISVDFQPIDWSMKETELQNQTIDLIWNGYTKTSERAEKVQFTQ PYMTNDQVLVSLKEKNIATASDMQGKILGVQNGSSGYDGFESQPDILKKFVKDQTPILYD GFNEAFLDLKSGRIDGLLIDRVYANYYLSHEDNLKNYTISHVGYDNEDFAVGVRKSDNQL VQKINTAFETLRKDGTLSKISQKWFGEDVTNNTKIN >gi|307679040|gb|GL456757.1| GENE 55 60923 - 61558 390 211 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 208 1 213 245 154 38 1e-36 MLTIKNLTKHFDNRTIIDHLNLEIPEGKILTIVGPSGGGKTTLLRCLAGLETIDSGELLL DGVPFNPAEMDNADQVVGVVFQDFQLFPHLSVLENITLAPTLVLKEEKAKSQQEALELLE KLGLAGKEKLYPYQLSGGQKQRVALARALAMKPKVLGYDEPTSALDPALRQQVEEVILDL RKQGMTQIVVTHDMAFAEKIADNLLTVAPVQ >gi|307679040|gb|GL456757.1| GENE 56 61571 - 62212 709 213 aa, chain - ## HITS:1 COG:lin1851 KEGG:ns NR:ns ## COG: lin1851 COG0765 # Protein_GI_number: 16800918 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Listeria innocua # 1 213 1 213 213 237 67.0 1e-62 MDYILEILPALVSGAGMTLKVFFFTLLGSIPLGIIIAFILQSSFKPLRYLINLYIWLMRG TPLLLQLIFVFYGLPLIGIVFERYDAALFAFILNYAAYFAEIFRGGIQAIPQGQYEAAKV LRLTRFQTVTRIILPQVVKIVLPSVGNEIINLVKDTSLIYVLGLGDLLRAGKIAMSRDVT LVPLALVGVIYLLFTAILTVASKKIEKFYQYYK >gi|307679040|gb|GL456757.1| GENE 57 63046 - 64677 1927 543 aa, chain + ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 1 542 1 549 549 391 39.0 1e-108 MKQKKWLIGLVALGLVLAACGSGGSKTTSNEASTQKINVASGGELSTLDSAHYTDVYSSD MIGQVVEGLYRQDKNGDPELAMAKAEPQVSEDGLVYTFKLREAKWTNGDPVKAGDFVVAF RNVVDPAYGSSSSNQMDIFKNGRAVREGQATMEEFGVKAIDDQTLELTLENPIPYLAQVL VGTPFMPKNEAFAKEKGTAYGTSADNFVGNGPFVISGWDGNSETWKLKKNDHYWDKEHVK LNEIDVQVVKEIGTGANLFDNGDLDYTVLADTYALQYKESKQAHFVPKAMVGYLSPNHRR EITGNEHVRKAFLQAIDKETFAKEILGDGSTALNGFVPANFAKNPDTGEDFRKENGDLLP YNIKEAQANWTKAKEELGKDKIELELISADSAIAKKTIEFVQGQLQQNLPGLTIKLKSLP LQNRLDLQTAGNYDLAFGTWTPDYADPINFLEFYDSKSGLNTSGYNDSAYDAGLQKVRKD YANEPEKRWNELLSLEKTLIEKDAGVLPLFQGAIGYLKSDRLQGLQVFSFGRTVSYRLAY VEE >gi|307679040|gb|GL456757.1| GENE 58 64784 - 65032 367 82 aa, chain + ## HITS:1 COG:SA0360 KEGG:ns NR:ns ## COG: SA0360 COG2261 # Protein_GI_number: 15926075 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 78 1 78 83 57 56.0 8e-09 MFSFLWALIVGGIIGAIAGAILGKDVPGGIIGNIIVGFLGSWVATLLLPSLGPVIGGFPI ISALLGAIICIAIYSFIVNRKA >gi|307679040|gb|GL456757.1| GENE 59 65098 - 65421 468 107 aa, chain - ## HITS:1 COG:no KEGG:EF0819 NR:ns ## KEGG: EF0819 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 107 1 107 107 201 100.0 7e-51 MFERFDSDRSRYASLGVVSSLPSGLIDSIWLIIDLNLKGVIPLNDLLHFDLLNNNGKVTV HFSQENSSVEMAIDLPFSYSTAYPSRIFAFDDGHRETILLPAEMLES >gi|307679040|gb|GL456757.1| GENE 60 65673 - 66281 1003 202 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229546665|ref|ZP_04435390.1| 50S ribosomal protein L25/general stress protein Ctc [Enterococcus faecalis TX1332] # 1 202 1 202 202 390 100 1e-108 MSVQLEVKERAIRPRSLRNQLRHEGKVPAIVYGYQIESTPIYFEEKDLSKILREHGANTV IKMTVDGKNINTLMSKAQLDTFTGQMLHVEFLSVNMKETTEVEAEVQLIGESAGVKAGGT LAQNLYTVLVAATPDKLPESIEVDITNLEIGDALTIADLPEHKDYEILTDPEEQLVAIVE AQTAPEEEEGTAAETIEPELAE >gi|307679040|gb|GL456757.1| GENE 61 66612 - 67394 733 260 aa, chain + ## HITS:1 COG:lin2436 KEGG:ns NR:ns ## COG: lin2436 COG1187 # Protein_GI_number: 16801498 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Listeria innocua # 1 234 1 230 233 197 45.0 2e-50 MRLDKLLEELQFGSRKTVKRLIRGKQVTVDGIVTLNESHNVDAQLQMIKVKGQLISHKTH VYYMLNKPKGVVSAVSDASKKTVIDLIAPQDRRPGLYPVGRLDGDTEGLLLLTDNGQLGY QLIRPNKEVAKCYEVKVNGLVSAEDCAKFKDGIVLQGGIQCKPAKITVLAATETESHVFL TIQEGKFHQVKKMFLSVGKKVTALKRQTMGPLRLDPQLPLGAYRSLTREELQLLLPYFFI EKQQTSKALPSNLKREEERK >gi|307679040|gb|GL456757.1| GENE 62 67391 - 68071 765 226 aa, chain + ## HITS:1 COG:BS_yfnB KEGG:ns NR:ns ## COG: BS_yfnB COG1011 # Protein_GI_number: 16077800 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Bacillus subtilis # 2 224 5 227 235 247 54.0 1e-65 MKTLLFDVDDTLLDFKLAEKKALHALFEEENVPFTSEVESTYHRINQGLWRSFEEGKITK DVLLDTRFGLLFDAFNREVDSVKMGENYREYLSQGHDLLGNSQRILEKLAPHYDLYIVTN GVAKTQYRRLEDSKLMPYFKDIFVSEEVGYQKPMKEYFDFVFERIPNFSREKTMIIGDSL HSDIQGGQQAKIQTVWLNPTSAPATPTIQPNYTIQQLDELLPILGH >gi|307679040|gb|GL456757.1| GENE 63 68107 - 68562 557 151 aa, chain - ## HITS:1 COG:BS_yvbK KEGG:ns NR:ns ## COG: BS_yvbK COG0454 # Protein_GI_number: 16080442 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 15 150 19 155 155 135 52.0 2e-32 MIKKVKKEALTTAHYALLYEADPSKKMVEDYITRGICFDYQTEELQGILVLLPTHPRTLE IVNIAVSEESRGRGIGQELLHFAIDFAKKEKYDYLEIGTGSTGFQQLYLYQKVGFRMTHI EPDFFIHHYDEPIMENGLPLKDMVRLRLHLS >gi|307679040|gb|GL456757.1| GENE 64 68737 - 69366 831 209 aa, chain + ## HITS:1 COG:BH1275 KEGG:ns NR:ns ## COG: BH1275 COG0572 # Protein_GI_number: 15613838 # Func_class: F Nucleotide transport and metabolism # Function: Uridine kinase # Organism: Bacillus halodurans # 5 206 4 205 211 278 70.0 6e-75 MKDSQPIIIGVTGGSGSGKTSVSRAIFNNFPDHSIMMLEQDSYYKDQSHLSFEERLNTNY DHPFAFDTDLLIQHVEQLLNYQAIEKPVYDYVAHTRSTETVIQEPKEVIILEGILILEDR RLRDLMDIKVYVDTDDDIRIIRRIKRDMEERGRTLDSVIEQYLTVVKPMYHQFIEPTKRY ADIIVPEGGENHVAIDLINTKVDSILTKM >gi|307679040|gb|GL456757.1| GENE 65 69535 - 69876 310 113 aa, chain + ## HITS:1 COG:lin0887 KEGG:ns NR:ns ## COG: lin0887 COG2337 # Protein_GI_number: 16799960 # Func_class: T Signal transduction mechanisms # Function: Growth inhibitor # Organism: Listeria innocua # 1 112 2 112 115 119 58.0 2e-27 MIKRGEVFYANLSPVVGSEQGGIRPVLIIQNNKGNLFSPTLIVAPITRNVSKRLQPTQVL IEILHNECRTPSLILLEQIRTLDKERMLHKVCQLSREEMEQVNQALKVSVGIR >gi|307679040|gb|GL456757.1| GENE 66 69978 - 70943 1070 321 aa, chain + ## HITS:1 COG:L194226 KEGG:ns NR:ns ## COG: L194226 COG0673 # Protein_GI_number: 15673536 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Lactococcus lactis # 4 321 2 319 324 246 42.0 4e-65 MDKIRYGIMSTAQIVPRFVAGLRESAQVEVRGIASRRLENAQKMAKELAIPVAYGSYEEL CKDETIDIIYIPTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLM EAQKSVFLPITQKVKATIQEGGLGEILWVQSVTAYPNVDHIPWFYSREAGGGALHGSGSY PLQYLQYVLGKEIQVITGTATYQQGATDSQCNLALKFAEGTLGNIFINVGLKIPSEMTIY GTKGQIVIPNFWKTDCAYYTDAQGNTVKWSEQFTSEFTYEINHVNQCLQDKKLTSPVMTK ELTIATVKIVESFYQEWFDNE >gi|307679040|gb|GL456757.1| GENE 67 71314 - 73233 1674 639 aa, chain + ## HITS:1 COG:BS_licR_1 KEGG:ns NR:ns ## COG: BS_licR_1 COG3711 # Protein_GI_number: 16080911 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus subtilis # 4 493 1 486 499 144 25.0 8e-34 MTVLLSKRAINILLMLLDLEGSITTQELAENFTVSVRTIKYDLEDIRAWFEQHDETLYSK RNKGIWLDLPDSKRLLLKNEIIDVDRFETYPDQKRRVNVLIFQLLSVKGYLTAQQLADEL LVSRNTIVSDLEQVERLLQAYDLTLIRQARQGFTISGEESNVRLLMEFITQKELTEYDIY QIMNYVTKTKGAEKIPKIKFGSGTLFQGCYRSALKKMRNLINPLDQNQFDYAEILSITLR VAIAAARMQMAHTIGTYRVLSQKTRFEQRNEVPLLLLQEVFERYDLPLLADEYFYIYSDL FGTHQRQDMVQLTKQVIESVSKELNYPFVNDRQLFTNLFAHLSLRFTKKHLFINEYNPFS EEIKGKHPALFLAIQSACKQLIQRSVLLVNDSFCAYIALHFLAAQERQQQEAKVVRIVYV CSTGLGVTSLIEQKILEEVPNVELAGFASVLNATEVIQAEKPDLVLSIFPIEEMTYPFIK VSPLLTDTDLSLIREEVDKILLGKRQGKGTARSTKSDVIEKNERIQSQDLLVKAYIIYEE LKRMFQTKLLSEYQEAFLLHVLLMTHRITFNKQYEEIPCNREVSHERQEEIRQIECLFAK NELPVNHAEISALLNYLEQPKEEEDGTSNGSTGDHSTKC >gi|307679040|gb|GL456757.1| GENE 68 73199 - 73522 530 107 aa, chain + ## HITS:1 COG:no KEGG:EF0829 NR:ns ## KEGG: EF0829 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 107 5 111 111 158 98.0 6e-38 MEAQEIIRQSAEPEKLQSIIKQTSARLAEAQIEPTELQWTILINHLNEMLNRSREGTTLA GVDRTLFTELTPETLQIAQETTEAIGQLSEDEWYVLAVHFEVAKQNN >gi|307679040|gb|GL456757.1| GENE 69 73537 - 73893 578 118 aa, chain + ## HITS:1 COG:no KEGG:EF0830 NR:ns ## KEGG: EF0830 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 118 1 118 118 194 100.0 7e-49 MITVVIADRLGKGQNVAKGVEQAGGRAVVVPGMGADMRLGDVMQQEKADLGISFCGSGGA GALTAATKYGYPERHGMRSIEEGVTAINDGKTVLGFGFMDQEELGKRVTEAFIKKHGA >gi|307679040|gb|GL456757.1| GENE 70 73924 - 74307 443 127 aa, chain + ## HITS:1 COG:no KEGG:EF0831 NR:ns ## KEGG: EF0831 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 117 1 117 118 175 95.0 6e-43 MDATKRSTQTVIVSGKGNKKNEAFASALNDVSKKVLKETTEVLIRIEPKEVTIRQAKEQV YTEKFLFFFFPRKRVIYHVELAVEVEIQAIAVEEVDFLTETIKEPNAVVVRFFQKEAYKG RKKEWNL >gi|307679040|gb|GL456757.1| GENE 71 74295 - 75074 1067 259 aa, chain + ## HITS:1 COG:no KEGG:EF0832 NR:ns ## KEGG: EF0832 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 259 1 259 259 436 99.0 1e-121 MEFVIILLKSLLIGGLLGFAAGAGAARMFHAPQTQGLGAFRTLGEMNAAQGDPASHFSFG LGFFFNAWASAVGAGAFTQDVTHRIVPNWAAAILLVKDKDVTKTMHNPKKMGIVGAFVGM ATVAFLNSTAAAIPESLQVTAVAVLVPAATILINTVMPVLFWLAALDAGKRTGFWGTLFG GLSQLVMGNAVPGVVLGILIGKGVDDLGWTRMTRGMLGAIILLFILSGFFRGFDLEMIES FRLSIPQWLNNLHNVFTVK >gi|307679040|gb|GL456757.1| GENE 72 75094 - 75789 1086 231 aa, chain + ## HITS:1 COG:no KEGG:EF0833 NR:ns ## KEGG: EF0833 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 231 1 231 231 317 98.0 3e-85 MEQQEKNEWAQQEQEIQEGLKGKSFWYADWGFPILVGIMSAAIFAGTHMYVVYGVGAFNE VSIVAMLKAGLDGGSYGAAATFGASFLFARILEGSLVGILDLGGSILTGIGIGVPAIFLS MGIKAPVENFGLALLTGAILGLAVGGVIVLIRKFTINQRNSTFGADVMMGAGNASGRFLG PLIILSAAGASIPIGIGATLGALGFYIWKKPIAGGAILGAMIFGAIFPVSL >gi|307679040|gb|GL456757.1| GENE 73 75920 - 77233 1440 437 aa, chain + ## HITS:1 COG:BS_ywbA KEGG:ns NR:ns ## COG: BS_ywbA COG1455 # Protein_GI_number: 16080890 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Bacillus subtilis # 1 437 1 442 444 293 42.0 6e-79 MNGFVQWMEVKLMPIANKFGSQRHMTAIRKGLIATMPLTIVGSFFTIFQNIPIEAYTKLI EPYQAILDIPSRYTMGLLALYATFGIASSLAKSYKLDSLTCGILALMAFLVTAAPPTRVF EDVDNVITAGRYINLANLGSASLFGAIVTALLSVEIYRFFIEKDIMIKMPDGVPPEVSNS FIALIPGAVILLLFWVIRHVIGFDFNGFLSTLLMPLKGILAGNSLFGGLLTVFLICFFWV LGIHGPAIMGPVIRPFWDMSIAENLEAFTNGANVHQLPNIFTEQFLQWFIWIGGAGTTLS LVVLMMFSKSTYLKSLGRLSFLPGLFNINEPVIFGTPIVMNPILGIPFIVAPLITTTLSY FLTVANIIPMMAARLAFAIPAPIAAWMSTNWSFSAAVLVIVNFLITMAIYYPFFKVYEKQ QLDKEAEELVAEQAAKN >gi|307679040|gb|GL456757.1| GENE 74 77310 - 77558 142 82 aa, chain + ## HITS:1 COG:no KEGG:EF0835 NR:ns ## KEGG: EF0835 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 11 82 11 82 82 114 98.0 2e-24 MIIWFIFFFIVSQIIIEKGQLPTVVYQLGLVKTLVFTAVCITLSMIIGGFLNQPVLLVGS TTILCSSVIAWKFRNKFENSGV >gi|307679040|gb|GL456757.1| GENE 75 77567 - 78655 1313 362 aa, chain + ## HITS:1 COG:L176316 KEGG:ns NR:ns ## COG: L176316 COG3589 # Protein_GI_number: 15672155 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 5 361 4 361 364 330 46.0 2e-90 MKRALGVSVYPDHSDINQDKAYLKKASECGFTRIFMSMLEVTDGKEAVQKKFKELISYAK NLGFETILDVVPSIFDELEISYDDLTFFSELGADGIRLDTGFDGNKEAMLTFNPFGVAIE LNMSNDVAYLDNILTYEANRPFLYGCHNFYPQAGTALPYDFFEKCSIRFKKEGIRTAAFI SSQVGEIGPWDVNDGLPTLEMHRQLPVTVQAKHLFATNLIDDVVIGNAYASNEELEALGQ LNRYQTELTIVFEEATSEIEKEIVTKNQHFRRGDITQQMIRSTEVRKKYKNEANPPHDNQ AMLQPGDVVVGNDAFGKYKNELQVVLEPHQDSRKNRVGRIIEEELVLLEFIKPWTKFRFI EK >gi|307679040|gb|GL456757.1| GENE 76 78664 - 79773 1303 369 aa, chain + ## HITS:1 COG:STM4445 KEGG:ns NR:ns ## COG: STM4445 COG3964 # Protein_GI_number: 16767691 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Salmonella typhimurium LT2 # 3 367 2 364 377 340 45.0 3e-93 MDYDLLIKNGQTVDGMPVEIAIKEKKIAAVAATISGSAKETIHLEPGTYVSAGWIDDHVH CFEKMALYYDYPDEIGVKKGVTTVIDAGTTGAENIHEFYDLAQQAKTNVFGLVNISKWGI VAQDELADLSKVQASLVKKAIQELPDFVVGIKARMSRTVIGDNGITPLELAKQIQQENQE IPLMVHIGSAPPHLDEILALMEKGDVLTHCFNGKENGILDQATDKIKDFAWQAYNKGVVF DIGHGTDSFNFHVAETALREGMKAASISTDIYIRNRENGPVYDLATTMEKLRVVGYDWPE IIEKVTKAPAENFHLTQKGTLEIGKDADLTIFTIQAEEKTLTDSNGLTRVAKEQIRPIKT IIGGQIYDN Prediction of potential genes in microbial genomes Time: Tue Jul 5 18:18:06 2011 Seq name: gi|307679039|gb|GL456758.1| Enterococcus faecalis TX0312 genomic scaffold Scfld15, whole genome shotgun sequence Length of sequence - 116426 bp Number of predicted genes - 121, with homology - 118 Number of transcription units - 56, operones - 30 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 25 - 264 225 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily 2 1 Op 2 . - CDS 306 - 1694 1252 ## COG0477 Permeases of the major facilitator superfamily 3 2 Tu 1 . - CDS 1829 - 1963 59 ## gi|307289354|ref|ZP_07569309.1| hypothetical protein HMPREF9505_02724 - Prom 1989 - 2048 3.3 - Term 1986 - 2042 3.0 4 3 Tu 1 . - CDS 2076 - 2930 784 ## COG0583 Transcriptional regulator - Prom 3039 - 3098 6.5 5 4 Tu 1 . + CDS 3322 - 4152 582 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I + Term 4250 - 4298 4.6 - Term 4232 - 4292 11.5 6 5 Op 1 . - CDS 4300 - 5154 935 ## COG3591 V8-like Glu-specific endopeptidase 7 5 Op 2 . - CDS 5203 - 5883 871 ## COG3227 Zinc metalloprotease (elastase) - Prom 6004 - 6063 8.6 8 6 Op 1 . - CDS 6168 - 6683 437 ## EF1035 putative lipoprotein - Prom 6704 - 6763 1.6 9 6 Op 2 . - CDS 6774 - 7352 539 ## COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism - Prom 7390 - 7449 8.9 + Prom 7381 - 7440 10.2 10 7 Tu 1 . + CDS 7576 - 8481 540 ## COG0726 Predicted xylanase/chitin deacetylase + Term 8556 - 8594 9.3 - Term 8543 - 8580 9.1 11 8 Op 1 33/0.000 - CDS 8603 - 8998 654 ## PROTEIN SUPPORTED gi|227519245|ref|ZP_03949294.1| 50S ribosomal protein L19 - Prom 9032 - 9091 5.3 12 8 Op 2 30/0.000 - CDS 9094 - 9834 924 ## COG0336 tRNA-(guanine-N1)-methyltransferase 13 8 Op 3 . - CDS 9824 - 10348 716 ## COG0806 RimM protein, required for 16S rRNA processing - Prom 10377 - 10436 7.3 - Term 10407 - 10449 7.0 14 9 Tu 1 . - CDS 10456 - 11817 1700 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family - Prom 11878 - 11937 9.8 + Prom 11863 - 11922 11.2 15 10 Op 1 . + CDS 12015 - 12389 455 ## EF1902 glyoxylase family protein + Term 12396 - 12437 -0.1 + Prom 12530 - 12589 7.3 16 10 Op 2 . + CDS 12620 - 13219 721 ## COG0398 Uncharacterized conserved protein + Term 13239 - 13292 5.5 + Prom 13221 - 13280 4.2 17 11 Tu 1 . + CDS 13320 - 15122 1417 ## COG0584 Glycerophosphoryl diester phosphodiesterase + Term 15128 - 15166 10.2 - Term 15116 - 15154 10.2 18 12 Op 1 . - CDS 15168 - 15854 891 ## COG0670 Integral membrane protein, interacts with FtsH 19 12 Op 2 . - CDS 15847 - 16332 670 ## COG2030 Acyl dehydratase - Prom 16355 - 16414 6.6 - Term 16452 - 16512 5.0 20 13 Tu 1 . - CDS 16530 - 17867 1531 ## COG0773 UDP-N-acetylmuramate-alanine ligase - Prom 17925 - 17984 9.2 - Term 17970 - 18016 6.6 21 14 Tu 1 . - CDS 18022 - 18966 1064 ## EF1909 hypothetical protein - Prom 18992 - 19051 6.2 - Term 19040 - 19091 7.1 22 15 Tu 1 . - CDS 19093 - 20052 1193 ## COG4129 Predicted membrane protein - Prom 20091 - 20150 6.2 + Prom 20007 - 20066 4.8 23 16 Tu 1 . + CDS 20155 - 20766 679 ## COG4129 Predicted membrane protein + Term 20768 - 20817 11.4 - Term 20756 - 20805 11.4 24 17 Op 1 . - CDS 20807 - 21688 1092 ## COG1940 Transcriptional regulator/sugar kinase 25 17 Op 2 . - CDS 21691 - 21993 348 ## COG0759 Uncharacterized conserved protein - Prom 22134 - 22193 10.0 + Prom 22091 - 22150 5.0 26 18 Tu 1 . + CDS 22171 - 22323 236 ## 27 19 Op 1 4/0.000 - CDS 22340 - 22921 793 ## COG0218 Predicted GTPase - Prom 22953 - 23012 1.9 - Term 22951 - 23016 13.3 28 19 Op 2 . - CDS 23019 - 24272 267 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 - Prom 24311 - 24370 2.9 + Prom 24354 - 24413 8.2 29 20 Tu 1 . + CDS 24464 - 25492 1241 ## COG2706 3-carboxymuconate cyclase + Term 25521 - 25572 14.2 - Term 25509 - 25560 14.2 30 21 Op 1 . - CDS 25571 - 26059 376 ## EF1919 acetyltransferase 31 21 Op 2 . - CDS 26071 - 27444 1402 ## COG3069 C4-dicarboxylate transporter 32 21 Op 3 . - CDS 27461 - 28381 1105 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase - Prom 28522 - 28581 7.6 + Prom 28472 - 28531 9.6 33 22 Op 1 . + CDS 28564 - 30474 1594 ## COG0524 Sugar kinases, ribokinase family + Prom 30514 - 30573 8.2 34 22 Op 2 . + CDS 30593 - 32101 1160 ## EF1923 hypothetical protein + Term 32318 - 32367 8.9 - Term 32137 - 32206 20.0 35 23 Op 1 . - CDS 32416 - 33261 830 ## EF1925 hypothetical protein 36 23 Op 2 . - CDS 33254 - 33793 431 ## COG4915 5-bromo-4-chloroindolyl phosphate hydrolysis protein - Prom 33814 - 33873 9.9 - Term 33982 - 34025 4.4 37 24 Op 1 4/0.000 - CDS 34065 - 34784 1202 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) 38 24 Op 2 5/0.000 - CDS 34792 - 36621 2202 ## COG0578 Glycerol-3-phosphate dehydrogenase 39 24 Op 3 . - CDS 36642 - 38147 1813 ## COG0554 Glycerol kinase - Prom 38232 - 38291 8.1 - Term 38367 - 38417 7.5 40 25 Op 1 . - CDS 38424 - 39890 1321 ## EF1931 hypothetical protein 41 25 Op 2 . - CDS 39880 - 41214 1255 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases - Prom 41423 - 41482 10.5 + Prom 41256 - 41315 8.4 42 26 Op 1 . + CDS 41395 - 41751 443 ## EF1933 hypothetical protein 43 26 Op 2 . + CDS 41785 - 41946 229 ## EF1934 hypothetical protein + Term 41950 - 41996 11.4 - Term 41931 - 41991 17.3 44 27 Op 1 9/0.000 - CDS 41992 - 43659 1793 ## COG0366 Glycosidases 45 27 Op 2 . - CDS 43674 - 45383 1670 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 45446 - 45505 6.6 - Term 45504 - 45537 3.1 46 28 Tu 1 . - CDS 45543 - 46250 820 ## COG2188 Transcriptional regulators - Prom 46354 - 46413 11.6 - Term 46389 - 46422 4.5 47 29 Op 1 . - CDS 46568 - 47008 606 ## EF1936 hypothetical protein 48 29 Op 2 . - CDS 47078 - 47614 402 ## PROTEIN SUPPORTED gi|227385040|ref|ZP_03868434.1| acetyltransferase, ribosomal protein N-acetylase - Term 47626 - 47671 8.3 49 29 Op 3 . - CDS 47684 - 50389 3485 ## COG0474 Cation transport ATPase - Prom 50633 - 50692 9.3 - Term 50580 - 50629 4.3 50 30 Tu 1 . - CDS 50707 - 51357 594 ## EF1939 hypothetical protein - Prom 51423 - 51482 6.4 + Prom 51290 - 51349 6.7 51 31 Op 1 . + CDS 51447 - 52112 662 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 52 31 Op 2 . + CDS 52184 - 52579 564 ## EF1941 hypothetical protein + Prom 52609 - 52668 5.0 53 32 Tu 1 . + CDS 52689 - 53870 1096 ## COG0477 Permeases of the major facilitator superfamily + Term 53882 - 53913 3.1 - Term 53869 - 53900 3.1 54 33 Tu 1 . - CDS 53907 - 55742 1601 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily - Prom 55770 - 55829 7.2 + Prom 55833 - 55892 7.2 55 34 Tu 1 . + CDS 55951 - 56100 249 ## EF1947 hypothetical protein + Term 56149 - 56205 4.2 + Prom 56161 - 56220 5.4 56 35 Tu 1 . + CDS 56251 - 56601 429 ## COG5646 Uncharacterized conserved protein - Term 56574 - 56608 6.0 57 36 Op 1 . - CDS 56612 - 56962 427 ## COG4898 Uncharacterized protein conserved in bacteria 58 36 Op 2 3/0.000 - CDS 57036 - 58040 1260 ## COG2222 Predicted phosphosugar isomerases 59 36 Op 3 3/0.000 - CDS 58034 - 59110 949 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains 60 36 Op 4 13/0.000 - CDS 59121 - 59951 932 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 61 36 Op 5 13/0.000 - CDS 59935 - 60726 868 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 62 36 Op 6 9/0.000 - CDS 60742 - 61212 569 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 63 36 Op 7 3/0.000 - CDS 61224 - 61643 536 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA - Term 61667 - 61701 3.2 64 36 Op 8 . - CDS 61715 - 64486 2191 ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain - Prom 64530 - 64589 7.3 - Term 64824 - 64869 4.3 65 37 Op 1 . - CDS 65057 - 66418 1222 ## COG0232 dGTP triphosphohydrolase 66 37 Op 2 . - CDS 66435 - 67259 691 ## EF1959 hypothetical protein - Prom 67355 - 67414 11.7 - Term 67547 - 67586 3.2 67 38 Tu 1 . - CDS 67612 - 68910 1694 ## COG0148 Enolase - Prom 68958 - 69017 5.1 68 39 Op 1 13/0.000 - CDS 69042 - 69797 939 ## COG0149 Triosephosphate isomerase 69 39 Op 2 26/0.000 - CDS 69846 - 71039 1466 ## COG0126 3-phosphoglycerate kinase - Prom 71063 - 71122 3.1 - Term 71082 - 71118 6.3 70 39 Op 3 5/0.000 - CDS 71166 - 72167 1317 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 71 39 Op 4 . - CDS 72207 - 73244 992 ## COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain - Prom 73377 - 73436 7.8 - Term 73606 - 73653 11.0 72 40 Tu 1 . - CDS 73665 - 74543 902 ## COG1284 Uncharacterized conserved protein - Prom 74585 - 74644 6.2 73 41 Op 1 2/0.077 - CDS 74686 - 75255 845 ## COG4475 Uncharacterized protein conserved in bacteria 74 41 Op 2 3/0.000 - CDS 75252 - 75758 706 ## COG4720 Predicted membrane protein 75 41 Op 3 . - CDS 75742 - 76557 729 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase - Prom 76578 - 76637 5.1 - Term 76672 - 76713 8.1 76 42 Op 1 13/0.000 - CDS 76732 - 78501 2300 ## COG0173 Aspartyl-tRNA synthetase 77 42 Op 2 . - CDS 78519 - 79820 1673 ## COG0124 Histidyl-tRNA synthetase - Prom 79920 - 79979 4.4 78 43 Op 1 7/0.000 - CDS 80178 - 80624 590 ## COG1490 D-Tyr-tRNAtyr deacylase 79 43 Op 2 . - CDS 80648 - 82861 2591 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases - Prom 82916 - 82975 8.0 - Term 83033 - 83065 -0.0 80 44 Op 1 9/0.000 - CDS 83076 - 83828 745 ## COG1385 Uncharacterized protein conserved in bacteria 81 44 Op 2 . - CDS 83830 - 84777 1600 ## PROTEIN SUPPORTED gi|227519318|ref|ZP_03949367.1| ribosomal protein L11 methyltransferase 82 44 Op 3 . - CDS 84793 - 85278 756 ## EF1977 hypothetical protein 83 44 Op 4 . - CDS 85235 - 85912 843 ## COG2094 3-methyladenine DNA glycosylase - Prom 86011 - 86070 6.8 + Prom 85959 - 86018 4.2 84 45 Tu 1 . + CDS 86041 - 87318 1571 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase 85 46 Tu 1 . + CDS 87646 - 87924 281 ## EF1980 hypothetical protein + Term 87981 - 88034 7.5 + Prom 88144 - 88203 8.9 86 47 Tu 1 . + CDS 88240 - 88713 705 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins + Term 88721 - 88781 18.4 - Term 88772 - 88815 13.0 87 48 Op 1 7/0.000 - CDS 88825 - 90012 1541 ## COG0282 Acetate kinase 88 48 Op 2 . - CDS 90037 - 91008 988 ## COG0827 Adenine-specific DNA methylase - Prom 91087 - 91146 8.2 - Term 91094 - 91142 0.3 89 49 Op 1 . - CDS 91173 - 91526 292 ## EF1985 hypothetical protein 90 49 Op 2 . - CDS 91526 - 91960 412 ## COG4940 Competence protein ComGF 91 49 Op 3 . - CDS 91950 - 92351 255 ## EF1987 hypothetical protein + Prom 92487 - 92546 7.0 92 50 Tu 1 . + CDS 92654 - 92779 153 ## + Term 92926 - 92984 12.1 93 51 Tu 1 . - CDS 93076 - 94017 556 ## COG0276 Protoheme ferro-lyase (ferrochelatase) - TRNA 94047 - 94120 62.3 # Met CAT 0 0 - Term 94717 - 94750 3.1 94 52 Op 1 . - CDS 94754 - 94978 173 ## EF1990 hypothetical protein - Prom 95016 - 95075 9.0 - Term 95021 - 95066 8.7 95 52 Op 2 . - CDS 95077 - 95277 324 ## COG1278 Cold shock proteins - Prom 95394 - 95453 9.5 - Term 95971 - 96026 5.0 96 53 Op 1 . - CDS 96114 - 97352 1550 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) 97 53 Op 2 . - CDS 97365 - 97766 273 ## SEQ_0188 phage holin 98 53 Op 3 . - CDS 97756 - 97878 158 ## gi|229549668|ref|ZP_04438393.1| conserved bactriophage protein 99 53 Op 4 . - CDS 97878 - 98252 436 ## EF2806 hypothetical protein 100 53 Op 5 . - CDS 98269 - 98781 577 ## EF2807 hypothetical protein 101 53 Op 6 . - CDS 98781 - 99068 472 ## MPTP_1473 hypothetical protein 102 53 Op 7 . - CDS 99065 - 99661 788 ## MPTP_1474 hypothetical protein 103 53 Op 8 . - CDS 99654 - 100535 1013 ## EF2810 hypothetical protein 104 53 Op 9 4/0.000 - CDS 100554 - 103346 2567 ## COG4926 Phage-related protein 105 53 Op 10 2/0.077 - CDS 103343 - 104098 481 ## COG4722 Phage-related protein 106 53 Op 11 . - CDS 104067 - 106991 2775 ## COG5412 Phage-related protein - Prom 107014 - 107073 2.8 107 54 Tu 1 . - CDS 107212 - 107562 522 ## EF2004 hypothetical protein - Term 107570 - 107603 5.1 108 55 Op 1 . - CDS 107615 - 108463 1016 ## COG5492 Bacterial surface proteins containing Ig-like domains 109 55 Op 2 . - CDS 108464 - 108838 236 ## EF2006 hypothetical protein 110 55 Op 3 . - CDS 108841 - 109239 379 ## EF2007 hypothetical protein 111 55 Op 4 . - CDS 109232 - 109600 629 ## PROTEIN SUPPORTED gi|229545408|ref|ZP_04434133.1| ribosomal protein L23 112 55 Op 5 . - CDS 109597 - 109941 239 ## gi|229545407|ref|ZP_04434132.1| hypothetical protein HMPREF0349_0624 113 55 Op 6 . - CDS 109955 - 110137 417 ## EF2010 hypothetical protein 114 55 Op 7 . - CDS 110166 - 111053 1077 ## EF2011 hypothetical protein 115 55 Op 8 . - CDS 111067 - 111690 725 ## EF2012 hypothetical protein - Prom 111759 - 111818 3.6 116 56 Op 1 . - CDS 111820 - 111903 87 ## 117 56 Op 2 . - CDS 111908 - 112252 317 ## EF2013 hypothetical protein 118 56 Op 3 . - CDS 112293 - 112502 139 ## gi|229545402|ref|ZP_04434127.1| hypothetical protein HMPREF0349_0619 119 56 Op 4 . - CDS 112511 - 114268 1322 ## EF2015 minor head protein, putative 120 56 Op 5 . - CDS 114243 - 115730 1143 ## EF2016 portal protein 121 56 Op 6 . - CDS 115742 - 116425 523 ## COG1783 Phage terminase large subunit Predicted protein(s) >gi|307679039|gb|GL456758.1| GENE 1 25 - 264 225 79 aa, chain - ## HITS:1 COG:BS_yfnI KEGG:ns NR:ns ## COG: BS_yfnI COG1368 # Protein_GI_number: 16077793 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Bacillus subtilis # 1 73 15 88 653 57 40.0 4e-09 MKKINNRLGLFLFFVLLFWAKTILAYYLDFSLGVKGSLQREILWFNPVATTLLLFGFSLY FKKHKTFMLSLTLLNVLNI >gi|307679039|gb|GL456758.1| GENE 2 306 - 1694 1252 462 aa, chain - ## HITS:1 COG:mll2542 KEGG:ns NR:ns ## COG: mll2542 COG0477 # Protein_GI_number: 13472297 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Mesorhizobium loti # 14 421 14 421 505 211 32.0 3e-54 MIDRKKVILYTCCMSLFVVTMDVTVVNVALPSIQSDFHTNLSTLQWVTDGYTLMVASLLL LSGSTADRIGRKRVLQLGLACFGLASFLCGISQTPGQLIAFRMLQGIGGSMLNPVAMSII TQVFTEKLERAKAIGLWGSVTGISLGMGPIIGGLIVSYFSWRYVFFVNVPIIAAAIILTQ KFVPESKVEKTAKNDFVGQALMILFLFSSIYSIIGLPRKGLFAPDILSTGIIGCLAIVIF FIYEYNIDNPLINPRFFLSIPFTSASFLAIFGFIIYNGYLFLNTLYLQEMRGFSPLEAGL STIPLAFVSFLVAPRAGEMVGRIGTKRPIMLCGISMLAVSFLQLFVTKTTPMIILFIIYI FLGIGFGMLNSPITITAIEGMPLSQSGTAAAIAVTCKQIGNSLGVALPSLLITKPITSSL TRTPFTNVWLLFGCCAIAIIFLSYLSNSPLAKKSLRRVRFYF >gi|307679039|gb|GL456758.1| GENE 3 1829 - 1963 59 44 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|307289354|ref|ZP_07569309.1| ## NR: gi|307289354|ref|ZP_07569309.1| hypothetical protein HMPREF9505_02724 [Enterococcus faecalis TX0109] hypothetical protein HMPREF9505_02724 [Enterococcus faecalis TX0109] hypothetical protein HMPREF9508_00278 [Enterococcus faecalis TX0312] hypothetical protein HMPREF9516_02566 [Enterococcus faecalis TX1302] hypothetical protein HMPREF9519_01450 [Enterococcus faecalis TX1346] # 1 44 1 44 44 72 100.0 1e-11 MGLFDISERNVQLFNNLRIDKSYLLRFNLKGFWCIVWLSKDLLF >gi|307679039|gb|GL456758.1| GENE 4 2076 - 2930 784 284 aa, chain - ## HITS:1 COG:BS_yclA KEGG:ns NR:ns ## COG: BS_yclA COG0583 # Protein_GI_number: 16077430 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 1 227 1 238 290 71 26.0 2e-12 MTIEKLEYFYTIAKYNSISKAASELHVSKSTLSASLKDLESELGHLLFDRNGNSLTLNSY GDKIVQSVYIILNEAKKMKLNLHEMIENPVMRLGFGNTSLMYKVTENEDQLNRFWECYHG SSFELLNKLENHELDFVITSADVNSPVLKKEQLIELKMYLCVSREIKQEIEEEGFTCLTN YPFLFLPHHLDHLEATKSVLEMLQLTSPLVCCYDTLMLTRLIEKSKGVYAVISLRKEQLQ EIDSKLFFLPIERKQKFYLYRNVSSSVFVQPGQIKATLQKLLET >gi|307679039|gb|GL456758.1| GENE 5 3322 - 4152 582 276 aa, chain + ## HITS:1 COG:PH1607 KEGG:ns NR:ns ## COG: PH1607 COG1235 # Protein_GI_number: 14591382 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Pyrococcus horikoshii # 1 272 1 245 249 63 26.0 5e-10 MKINYLGTGAAERIPGIFCNCKLCKYAREKKGREIRTQTQLIIDDVLLIDFPGDSYLHLL QYDLCFADFDSLLISHWHSDHFYGEDLAYRMSGYALDIPNRLTVYGNEAVKTFYQRAFDL EGRQDDTRLHYQVIQPYKCFTIANYTIYPLPAQHGNFSEDCFIFVIDDGKDAFLSTHDTG YFTSEMFEYLEKSHLLLSIVSLDCTSQTNETGNSHMNWEENLKLITELKERKLVTDKTIY VANHFSHNGGLSYAEMAALSQKHEIITSYDGLEILT >gi|307679039|gb|GL456758.1| GENE 6 4300 - 5154 935 284 aa, chain - ## HITS:1 COG:SA0901 KEGG:ns NR:ns ## COG: SA0901 COG3591 # Protein_GI_number: 15926635 # Func_class: E Amino acid transport and metabolism # Function: V8-like Glu-specific endopeptidase # Organism: Staphylococcus aureus N315 # 43 272 64 280 342 80 27.0 4e-15 MKKFSIRKISAGFLFLILVTLIAGFSLSANAEEYIVPAESHSRQKRSLLDPEDRRQEVAD TTEAPFASIGRIISPASKPGYISLGTGFVVGTNTIVTNNHVAESFKNAKVLNPNAKDDAW FYPGRDGSATPFGKFKVIDVAFSPNADIAVVTVSKQNDRPDGPELGEILTPFVLKKFESS DTHVTISGYPGEKNHTQWSHENDLFTSNFTDLENPLLFYDIDTTGGQSGSPIYNAQFEVV GVHSNGGIKQTGNHGQRLNEVNYNFIVNRVNEEENKRLSAVPAA >gi|307679039|gb|GL456758.1| GENE 7 5203 - 5883 871 226 aa, chain - ## HITS:1 COG:BS_nprE KEGG:ns NR:ns ## COG: BS_nprE COG3227 # Protein_GI_number: 16078534 # Func_class: E Amino acid transport and metabolism # Function: Zinc metalloprotease (elastase) # Organism: Bacillus subtilis # 12 207 332 521 521 140 42.0 3e-33 MSVVDEQHPDAYDNAFWDGKAMRYGETSTPTGKTYASSLDVVGHEMTHGVTEHTAGLEYL GQSGALNESYSDLMGYIISGASNPEIGADTQSVDRKTGIRNLQTPSKHGQPETMAQYDDR ARYKGTPYYDQGGVHYNSGIINRIGYTIIQNLGIEKAQTIFYSSLVNYLTPKAQFSDARD AMLAAAKVQYGDEAASVVSAAFNSAGIGAKEDIQVNQPSESVLVNE >gi|307679039|gb|GL456758.1| GENE 8 6168 - 6683 437 171 aa, chain - ## HITS:1 COG:no KEGG:EF1035 NR:ns ## KEGG: EF1035 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 171 3 176 217 104 39.0 2e-21 MKKIILIGLLLSILSGCSSNKSGDSTASKPTATSEMKAPVTVNNSQASQMSTESKSSTTQ SNSSASSKAENQLWSAQKKAQLQQFMADWGQRMNQTYKEYTPGNSINFNGVQAPDGLVGN VTMQPAIGQHPIYLEWSENGQVKDGYALVAVYSDAETQPEMQKHLYLFTII >gi|307679039|gb|GL456758.1| GENE 9 6774 - 7352 539 192 aa, chain - ## HITS:1 COG:L132126 KEGG:ns NR:ns ## COG: L132126 COG1713 # Protein_GI_number: 15673861 # Func_class: H Coenzyme transport and metabolism # Function: Predicted HD superfamily hydrolase involved in NAD metabolism # Organism: Lactococcus lactis # 5 187 10 192 197 167 45.0 9e-42 MDHQQVLKNEIKQYLVSKNCEKTYYHCMEVGEYAYQLGEKYLTSPEKVSIAGYLHDISAI YPNNQRISVAQKYGIELNEAEMAFPMIIHQKISKSIAKMDFGIEDNEILSAIECHTTLKK NYSDIDLVLFVADKIKWDQEGKPPYLDGLLQALNCSLENAAYFYIDYILKHDIKVVHPWL WDAYNQLNLIIK >gi|307679039|gb|GL456758.1| GENE 10 7576 - 8481 540 301 aa, chain + ## HITS:1 COG:CAC0090 KEGG:ns NR:ns ## COG: CAC0090 COG0726 # Protein_GI_number: 15893386 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Clostridium acetobutylicum # 1 300 1 292 293 149 33.0 7e-36 MRHKKRKFKINGYVLFSALILIVLVFIQTFLLTQPKITSKNDDTTQTSTKNSTAKKDSPT KLEKESTHMTISSKKYAYSADKIRKYITGEEPYKGEKLVFLTFDDGVNNQITPQVLDTLK KYNVHATFFLVGNTLTSENQNIVKREVAEGHSIGFHSSTHDYATLYPNGIVNTEEIQAEI ATMENSLKKILGETFQTTLWRYPGGHMSWGGTEKSDELFKQLGIHWIDWNAMVGDAEPLD RQPTTVAEMLAFHQHSLEVYPDYNIRVVLMHDSVDKELTKQALPQLIEFYQANGYQFGVL Y >gi|307679039|gb|GL456758.1| GENE 11 8603 - 8998 654 131 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227519245|ref|ZP_03949294.1| 50S ribosomal protein L19 [Enterococcus faecalis TX0104] # 1 131 1 131 131 256 99 4e-67 MAEVTIRIFGNKEKDKMNPLIQELTQEQLRTDIPAFRPGDTVRVHAKVVEGTRERIQLFE GVVIKRRGAGISETYTVRKVSNGVGVERTFPLHTPRVAQIEVVRYGKVRRAKLYYLRALH GKAARIKEIRR >gi|307679039|gb|GL456758.1| GENE 12 9094 - 9834 924 246 aa, chain - ## HITS:1 COG:lin1906 KEGG:ns NR:ns ## COG: lin1906 COG0336 # Protein_GI_number: 16800972 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-(guanine-N1)-methyltransferase # Organism: Listeria innocua # 1 239 1 240 245 310 61.0 1e-84 MRIDVLTLFPRMFEGPMGESIIGKAREKQLLELNVSNFRDFSDNKHQTVDDYPYGGGAGM LLKVQPIYDNLKAIEEETNQQPKRVILLDPAGKPFNQKMAEEFSQEEHLVFICGHYEGYD ERIRTMVTDEVSLGDYVLTGGELGAMVMIDATVRLLPDVLGNNLSAQTDSHSTGLLEHPQ YTRPAIFNDMEVPAVLTNGNHKLIAEWQLKESLRRTFLRRPDMLESVEMTPEMLKLLEEI KQEEQK >gi|307679039|gb|GL456758.1| GENE 13 9824 - 10348 716 174 aa, chain - ## HITS:1 COG:BH2480 KEGG:ns NR:ns ## COG: BH2480 COG0806 # Protein_GI_number: 15615043 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RimM protein, required for 16S rRNA processing # Organism: Bacillus halodurans # 1 171 1 173 173 192 56.0 3e-49 MTDYLNVGKIVNTQGIKGEVRVISKTDFPEERYQKGATLLLFQEKKAPIELVVESHRKHK NFDILSFEGHPNINDVEKYRDGILKVAKDNLAELGEDEFYYHQIIGATVYDETGSELGKI KEILSPGANDVWVVQRPKKKDLLLPYIEGVVTKVDVENQRIDVDIPEGLIDDEN >gi|307679039|gb|GL456758.1| GENE 14 10456 - 11817 1700 453 aa, chain - ## HITS:1 COG:SA0956 KEGG:ns NR:ns ## COG: SA0956 COG1914 # Protein_GI_number: 15926690 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Staphylococcus aureus N315 # 17 451 13 448 450 481 58.0 1e-135 MKEKKTEKMLNYANGPSLEEINNTVEVPKNASFWRTLLAYSGPGALVAVGYMDPGNWITS IAGGAEYKYTLLSVILLSSLVAMLLQSMAARLGIVTGMDLAQATREHTSKRTGVALWVVT ELAIMATDIAEVIGGAVALQLLFGFPLLIGVLITTFDVLLLLLLTKLGFRKIEAIVSCLI AVIFFVFAYEVALADPNIGEVLRGFIPDTKIATDKSMLFLALGIVGATVMPHNLYLHSSI AQARKFDRNDDAEKAKAIRFTTWDSNIQLTVAFVVNCLLLILGGALFYGTNSELGKFVDL FDALKNPDIVGNIASPVLSILFAIALLASGQNSTITGTLSGQIVMEGFIHLKMPLWARRV LTRLLAIVPVIICVIIYGGSETAVEDLLLYTQVFLSIALPVSIIPLTMYTSDKKLMGQFA NPAWVKFLAWIIAIALTLLNLFLIYGTLTGLTN >gi|307679039|gb|GL456758.1| GENE 15 12015 - 12389 455 124 aa, chain + ## HITS:1 COG:no KEGG:EF1902 NR:ns ## KEGG: EF1902 # Name: not_defined # Def: glyoxylase family protein # Organism: E.faecalis # Pathway: not_defined # 1 124 1 124 124 246 99.0 2e-64 MKLDMVGIIVNDMTQALSFYQTLGFNVLGEASPDYTELQNNGVRISLNSLQMITGVYGFA PSQQGDKIELAFLCETAAEVDNTVKKMSQAGYIVFKEPWNAPWGQRYAIIKDVDANLISL FAPL >gi|307679039|gb|GL456758.1| GENE 16 12620 - 13219 721 199 aa, chain + ## HITS:1 COG:L114884 KEGG:ns NR:ns ## COG: L114884 COG0398 # Protein_GI_number: 15672877 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 7 197 10 201 201 178 53.0 7e-45 MSVTLSRKIVNIISILGIVATIIATIYFIRLGVFKDINALRGLVGQSVILGPIIFMLIQI IQVVIPIIPGGVSCAAGVLIFGPTMGFVYNYVGIALGSIIIFLLGRNYGKPFIMSLVSDK TYNKYIGWLDNEKRFERLFALAIFFPIAPDDALCLMAGLTKMSVKKFTLIILLAKPASIY LYSLALIYGGTFLTSLLGM >gi|307679039|gb|GL456758.1| GENE 17 13320 - 15122 1417 600 aa, chain + ## HITS:1 COG:L58914_2 KEGG:ns NR:ns ## COG: L58914_2 COG0584 # Protein_GI_number: 15673979 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Lactococcus lactis # 353 593 1 240 249 239 48.0 1e-62 MFSYFKNSIVNTLDFLKGTTAYFRDVLLMHGFMLFVLLPLLTSLSKLVLKEGGIDYISYD NLGAIATQHPYVLLTFLLIGLLILLALFFEFTFLLLSVYFIKKKQPITLTQLLHGTLLQI KKVRGITFLFFLAYFFLILPLSGLTFRSYLLTRVKIPAFILDFIFANRVIIIIGFVLLEL IILYLAIRLAFALPELILRDVGFRESLKRSWQITKRRFFQILGQFIIIGGTVLGIFTAGY FLIFLGQTAVETFKPEWSLPSAVIAMTLLQVMMLLNLVLSSVAIFYIIVDDMEDEGILPD TPEWFTPKSEVRVEWTTFRVVLFCLIAIFFGIGVGTYNTNYLSHTPDRKPVTISHRGVNG NNGVQNTLDSLIETNKAKPDYVEMDIQETKDHQFIVMHDFNLRALTGVNKRPNQLTLKEL TNMNVTENGQTAKIVSFDDYLAKANQLKQRLLIEIKTTPQGSPDLVQRFVKQYRENILEN GHILHTLTYDTAMALKKEEPRFYVGYVIPFNIVGPPKMPVDFFTMEYSTMNRNFVNAAHH DGKKVYAWTANDEDVMTRMIFYGVDGIITDQLSLLNETMKTDLENPTYSDKLLNFAIGMG >gi|307679039|gb|GL456758.1| GENE 18 15168 - 15854 891 228 aa, chain - ## HITS:1 COG:SP1972 KEGG:ns NR:ns ## COG: SP1972 COG0670 # Protein_GI_number: 15901795 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Streptococcus pneumoniae TIGR4 # 3 228 10 235 235 161 47.0 1e-39 MNNQEYIQTGTGLNKFYAKIYGFLALGIGISAIMAYAMTTVFLPVLATLFQSSLAFWMIW LVEIGLVLYLGAKAQKNPTIAIAGFVAYALLNGVTLSVTLLMYTGGTVAGAFLSAAATFG AMSLVGVFTKKDLSAVGHAAYSALIGIIIAMLLNMFLLHSNAVEFFISILMVLIFSGITA YDNQRIRQVYAQTGDQAGTGMAVFFALQLYLDFINLFLAFLRIFGKNN >gi|307679039|gb|GL456758.1| GENE 19 15847 - 16332 670 161 aa, chain - ## HITS:1 COG:FN0816 KEGG:ns NR:ns ## COG: FN0816 COG2030 # Protein_GI_number: 19704151 # Func_class: I Lipid transport and metabolism # Function: Acyl dehydratase # Organism: Fusobacterium nucleatum # 14 137 4 127 134 70 29.0 1e-12 MNIGKPRKLGKTIEDIEEGDSLSLTESIEDKDLLLYLGLTNDANPLYIQHDYAQKTEYEK PIVPSIMLMGIITSAISKHLPGPGSHVVNFSVNFVEPVFHYETLTFQLEVIKVDKMKDVI TISVEAVNEQENRVLDAVVMVQPPQVTIDELTEKEGTLTYE >gi|307679039|gb|GL456758.1| GENE 20 16530 - 17867 1531 445 aa, chain - ## HITS:1 COG:lin1646 KEGG:ns NR:ns ## COG: lin1646 COG0773 # Protein_GI_number: 16800714 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Listeria innocua # 8 439 3 433 447 555 60.0 1e-158 MGNQENKLYHFVGIKGSGMSSLALVLHQKGYNVQGSDVEEYFFTQRDLEKSGVPILPFNA DNIDKDMIVIAGNAFPDTHEEIARAIELGAEVIRYHDFIARFIEPYTSIAVTGSHGKTST TGLLAHVLSGINPTSYLIGDGTGHGEPDADFFAFEACEYRRHFLAYSPDYAIMTNIDFDH PDYYKSIEDVFSAFQTMAHQVKKGIFAYGDDKYLRQLESEVPVYYYGVSEEDDIQARNIQ RTTEGSSFDVYHKDDFVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSFKGV KRRFSEKKVSDMIIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEF AEALDLADEVFLCNIFGSARETQGEVRIEDLGEKIQKGGQVITEDNVSPLLDFENAVVVF MGAGDVQKFEQAYETLLSNTTRNVL >gi|307679039|gb|GL456758.1| GENE 21 18022 - 18966 1064 314 aa, chain - ## HITS:1 COG:no KEGG:EF1909 NR:ns ## KEGG: EF1909 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 314 1 314 314 470 99.0 1e-131 MDNAQVKRKHFRFPAYDDEQGVKLPTDNERNLFQDDLIGKAMSGSRRTATSAEDTRQSTP SVQQPTTNQSTTNKQTQQLTAAQQEQLARHRSNLPDYTKHASKATKNKQATKKNNSLFGT PKGNGWTQTYKKKEVVAKPSRPAASPLVQKTTPSYFVPKYIPASVIPEEQEPSFTEEELL KAMKKDRRSYVILDDEPTAFQVKDTEEDPTVRKFNIPTSEPEIPLTRRQYQQIKPDLERF GEDALDLRSRSRLNAAKKNAKSQTAYGKKLAKANAQVEPEALVTEEKKKGILDKPLSGML EDSSSVLENSKYFS >gi|307679039|gb|GL456758.1| GENE 22 19093 - 20052 1193 319 aa, chain - ## HITS:1 COG:lin1983 KEGG:ns NR:ns ## COG: lin1983 COG4129 # Protein_GI_number: 16801049 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 1 312 1 312 327 224 41.0 1e-58 MKIGLRTVKTAISAALAMIIAEKLGLLYAPSAGIISVLSVTSTKKTSVMTGIYRLLSLAL ATILAYICFTFLGFTAIAFGIFLLLFIPAAVYFQLSDGIVVSSVLVTHYLVEKNLSWAII GNEFLLMSIGVGLALLANSYMPDTEKRLREDQKVIETMFRKILREMALHLNNAAGERNLV MHCADLKTFIRTGETWAKNHAENQLLSTNTYYLEYFAMRKMQSNILKNMLELLEDITVDA QQVRYIQQLLEYTAETFAENNDGQEIMNRIKTVYETYRTKPLPQTRSEFENRARLFQFLQ LFQSFIQVKADFAKLQLDK >gi|307679039|gb|GL456758.1| GENE 23 20155 - 20766 679 203 aa, chain + ## HITS:1 COG:SPy1879 KEGG:ns NR:ns ## COG: SPy1879 COG4129 # Protein_GI_number: 15675698 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 3 152 15 164 183 132 45.0 3e-31 MIVGRFRLGMRTLKTAIAVMLCILLFQFFHRGSPMIACLAAVFSLRQDLNTSLSFGKSRI IGNTLGGFLALLYVLAQDYFPNQHLVELLLLPLLVIIVIVVSDGINNNAGIISATATLLM ISLSIPQSDSFQYAMERVLDTFIGTFIAIGLNVFLQPKPAEEAHEISEDLAELEKKEKEL ETLRQQVQARIAAEENTDDKANK >gi|307679039|gb|GL456758.1| GENE 24 20807 - 21688 1092 293 aa, chain - ## HITS:1 COG:L118696 KEGG:ns NR:ns ## COG: L118696 COG1940 # Protein_GI_number: 15673470 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Lactococcus lactis # 1 285 1 283 293 261 45.0 8e-70 MAILAFDLGGSSVKYGVWTGKELTNQGSFPTPGSWEEMKAHLYSIYADKRNESISGVAFS SPGVVDEKSQQILGISAIPYIHHFNIYEELEALFGLPVTIENDANCAGLAEIYEGAAKGK KEVLFVVIGTGIGGAIFRNGELYKGAHLYGGEFGLNFLSNGQTFSEIGTAVKMAQRYCER IGVEKQAVTGEEVFELAQRGDEIAREEVNNFYDYLTQGLFGLQFSYDPEMIVLGGGVSAK EGLLAEINRRMLTHLQTFELKDFVPEIVTCHYQNDANLIGAAANFQAKTNWEL >gi|307679039|gb|GL456758.1| GENE 25 21691 - 21993 348 100 aa, chain - ## HITS:1 COG:L122982 KEGG:ns NR:ns ## COG: L122982 COG0759 # Protein_GI_number: 15673654 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 77 1 77 88 97 59.0 6e-21 MKNPLIGGVRFYQRFISPGLPARCRYYPTCSQYMIDAIHTHGSVKGTTMGVARILRCHPF VKGGIDYVPLKFRLTKNPDETYHGPYTYRRNKKTEVEKDG >gi|307679039|gb|GL456758.1| GENE 26 22171 - 22323 236 50 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGLKFERSNDLDKLFDSFAVDPLKKEVPLEELAKQRQEVKKEEAKKQAKE >gi|307679039|gb|GL456758.1| GENE 27 22340 - 22921 793 193 aa, chain - ## HITS:1 COG:SP1568 KEGG:ns NR:ns ## COG: SP1568 COG0218 # Protein_GI_number: 15901411 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Streptococcus pneumoniae TIGR4 # 1 189 3 191 195 296 74.0 1e-80 MNVHNAEIVISAVSPKQYPESQLPEIALAGRSNVGKSSFINTLINRKNLARTSGKPGKTQ TLNFYLIEDALHFVDVPGYGYAKVSKTERAKWGKMIETYITQREQLRAVVSLIDLRHPPT QDDIQMYEFLKYYDLPVIIVATKADKIPRGKWNKHESVIKKALNFDKQDDFIIFSSETKE GKEAAWTAIEKFL >gi|307679039|gb|GL456758.1| GENE 28 23019 - 24272 267 417 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 154 395 248 444 466 107 32 3e-22 MYDNTDNNGTVRCSFCGKTQEEVKKIVAGPGVYICNECIDLCKEIIDEEFYDEAVRELTD VPKPQEILNVLNEYVIGQERAKRTLSVAVYNHYKRVNQSETAATQDDVELQKSNICLIGP TGSGKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQSADYNVERAEKGI IYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDT TNVLFIVGGAFDGIETIVKNRLGEKTIGFGKTNSALNEEESIMQHIIPEDLLKFGLIPEF IGRLPVMAALDKLTNDDLVRILTEPKNALVKQYQKLLSLDDTKLEFEPEALKAIAAKAIE RNTGARGLRSIIEEIMMDVMFDVPSDESIEKVIITKMAAEGTGKPTIIYNKKDKEAV >gi|307679039|gb|GL456758.1| GENE 29 24464 - 25492 1241 342 aa, chain + ## HITS:1 COG:SP1506 KEGG:ns NR:ns ## COG: SP1506 COG2706 # Protein_GI_number: 15901353 # Func_class: G Carbohydrate transport and metabolism # Function: 3-carboxymuconate cyclase # Organism: Streptococcus pneumoniae TIGR4 # 1 341 1 335 337 345 53.0 6e-95 MLEQILLGTYTRRASQGIYKIALDTTQGRLTEATLLLEETSPTYLALSQKGELFSVTSVD GEGGTAAYQPEMDHFNLLNKVTEEGAPPCYVAVDENRQLVYAANYHQGIVHVYRILEDGS LEDADKVIHTEPTGPHENQNNAHVHYTDLTPDQRLVVCDLGTDRVYTYNVSLDGKLSEIA QFVTEPGTGPRHLVFHPTKSLAYLFGELDSTVSVLSYDETDGSFTELQKVSTLPADYDAF NGGAAIRISSDGRFLYASNRGHNSIAVYAVSENGEAIERIQLISTEGDIPRDFDLDPSED FIVVANQDSDNLTLYRRNQETGLLEMIQKDVAVPECVCVLFV >gi|307679039|gb|GL456758.1| GENE 30 25571 - 26059 376 162 aa, chain - ## HITS:1 COG:no KEGG:EF1919 NR:ns ## KEGG: EF1919 # Name: not_defined # Def: acetyltransferase # Organism: E.faecalis # Pathway: not_defined # 1 162 1 162 162 304 98.0 6e-82 MKIRVADEKELPMILQFLTEVKAFMDVVGITQWTKDYPSQEDIQEDITKKRLYLLMHEEM IFSMATFCMEQEQDFVWLKRFATSPNYIAKGYGSLLFHELEKRAVWEGRRKMYAQTNHTN HRMIRFFESKGFTKIHESLQMNRLDFGSFYLYVKELENQSIV >gi|307679039|gb|GL456758.1| GENE 31 26071 - 27444 1402 457 aa, chain - ## HITS:1 COG:VCA0665 KEGG:ns NR:ns ## COG: VCA0665 COG3069 # Protein_GI_number: 15601423 # Func_class: C Energy production and conversion # Function: C4-dicarboxylate transporter # Organism: Vibrio cholerae # 1 456 5 456 459 223 36.0 7e-58 MIESLLVLVVLVVVAYLIVKNYHPALSLIIGALVLLACAWMLGHPIYPAGEGTGFGLFDI FLKFKDTIIAQVSSAGIVIMILFGYSGYMNAIGANQMAVNFLVKPLMKIKRKSLFVPVVF LIGNLMSLVVPSASSLAIILMSILYPMLASMGISSLTAAGVIAMTATIMPTPLGADNVIA ANTLGYDVLNYVVWNAKISLPSLLIIAVAQYFWQKYCDKKEGEAAYVSLNEEGLSKQKEF DVPKFYAILPILPLLLIVGVGIAGMFVKGITMDIFVLTFISFFIAVLVETLRLKSFKKVQ DTAVEMFKGMGQGFSQVVMLVVGGSLFTSAIQTLGIIDSIMASVEASSSAGIVTTLIFSG ATTLFGILSGGGLAMFYAVIELIPGIAEKAGIDGILISLPMQMIANLTRTISPVAAVVMI VASTVGVSPIRILKRTSVPTIIGIISVIVLSILLLPY >gi|307679039|gb|GL456758.1| GENE 32 27461 - 28381 1105 306 aa, chain - ## HITS:1 COG:STM0051 KEGG:ns NR:ns ## COG: STM0051 COG1957 # Protein_GI_number: 16763441 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Salmonella typhimurium LT2 # 8 300 7 300 306 266 48.0 5e-71 MDTKKRPIIIDTDPGIDDAVALAIALNHPNLEVRLITTVAGNVDVEKTTNNALKLVDFFG KKVPVAKGCNCPLLIQLEDSAEIHGETGMDGFEFPQPISTCLDIHAVEAMRKEILSSDVP LTIVPIAALTNIALLLTLYPEVKENIAEIVMMGGSLARGNTNTSAEFNTYVDPHAAQIVF QSGVPLTMVGLDVTSQAVLTNHEVTAIRALGRVGEMFYGLFRHYRGGSLTTGLKMHDVCA IAYLTSPELFETTETFIEVALEGPAAGATVADLKMKYHKNTNAVACIDVNVEAFQKWVVE KMKAVN >gi|307679039|gb|GL456758.1| GENE 33 28564 - 30474 1594 636 aa, chain + ## HITS:1 COG:PA1950 KEGG:ns NR:ns ## COG: PA1950 COG0524 # Protein_GI_number: 15597146 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Pseudomonas aeruginosa # 323 621 2 305 308 180 36.0 7e-45 MNIKDIAKLAGVSASTVSKIINNKDQTISKETRERVLKIVRDYNYTPYSANLVTNSTTKT FVLLLNSHETFEAWVTSFIDKAQENGYSCLILNSHGSLEQELKNITSPTLKQASGIIWDP INENSKQYAKFIEELTIPYYFVNHSTNELPSLARLYEEASYVLTRELLQNNHKKISYFVT NQKYKEAIIAGYKKALFDVNLPFSKENILTTIPADFSNQLITDGITGILTDDYTQAVFLE QLLKQSGLRTPDNYSLLAIKRKIDRSFLPDHISSVLLDTETFGSQLALLLLNKRKEKTAL INEAEKLVLDHKNTLGMSSVNPHSKMIVVGSLNVDNYLYSTNLPHNGKTNFLSSYAKFPG GKGLNQAVGLTKLGHQATLIGCLGSDTDANYLYKELEKYHVTTDGITRIQDTETGQAYIY VETSGDSMISILPGANTALTPKKIAQQKHLFMDASFCLIQTEIPLSAVEKACEIAQHSGV PIILKPAAIHHIPVNILEKVDFFIPNEDELLELQPDTGTLEEKAAYFLEMGVKNVIVTLG KKGVLLKTPQVCHYFPATENIAVDSTGASDSFISALASYLSKGYPTEAAIQIAIQAAGFS VSKEGVIDSLVDHVTLENYLIKKEPALFAHRNTCVD >gi|307679039|gb|GL456758.1| GENE 34 30593 - 32101 1160 502 aa, chain + ## HITS:1 COG:no KEGG:EF1923 NR:ns ## KEGG: EF1923 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 23 502 1 480 480 868 98.0 0 MSLIKTQDAIKTFLLSKKTQKKLAVFLYLAKQTNLDLSSVARKFDLSTKNLSIYLREIQE DLATLPENTLEIQIHHGKISLHTTSNDFLSHYFLLFNYYCVHSTDFILFQAIIKKENNSV WKVSQETNFSSSYIYKRLNNINKLFGLYGISVHFSPSASKVITGSEFQVLYAFLDVYWTI FLNTLALPRYTSTYFEDILTQHIKPEILERLEHASLLKLNLLLHIAKYRFPYTCEDDLQK EFEEHPYLRLFSDSKQTIFCSQSNFSEDQQRVVDIIAPIAIDNFDSAKRAKDLLAALNEI SCPEYFYVDSLLTNFCEVFQIPKMREFDRHYFLLILFKNIIYNQLFISQQPNTAILDFLV NKNSTYQKDLQKEIYAFYQNFSAHSPYQLRFKDQENPIWTCELLLRIYKHYSPRKKIKIG VAYSRDFYIASFIMMKIKQAFSEDIIFERTDFSSCDIVITDYPLFDLPKEIDRIYILEEE LTREDWELIFSKISIAIFDLQY >gi|307679039|gb|GL456758.1| GENE 35 32416 - 33261 830 281 aa, chain - ## HITS:1 COG:no KEGG:EF1925 NR:ns ## KEGG: EF1925 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 281 1 281 281 468 98.0 1e-130 MAKQKNFYDTYDALFQKPKWSFFPVTRTDTVKQLPNPNKKVVKPQTKKKKKQKKNKKIIW IGIAVAIGFIVYIDLAEKDDYWDYSASSEDVYPLKEAGLTTTGPVDLEKPLKVTIEENKL LFNQGYQIEIIGDADIETSGGKNFLILPSTEEYPDTKYLGNISFYEKRDYYTSAGMYLSG NLINSLSDYLDTSKEFIKAYPIDKIADVQTGYILKRNQGYTDISKYYLFKDGTGFELEVS VDQLEKVKDPKDYSSFVKTYAKEVAFIEKSFKFESTDEESR >gi|307679039|gb|GL456758.1| GENE 36 33254 - 33793 431 179 aa, chain - ## HITS:1 COG:L175712 KEGG:ns NR:ns ## COG: L175712 COG4915 # Protein_GI_number: 15673319 # Func_class: R General function prediction only # Function: 5-bromo-4-chloroindolyl phosphate hydrolysis protein # Organism: Lactococcus lactis # 29 162 63 195 208 74 29.0 1e-13 MNGIMVLLVGTGYIGWVIYRNGRTYFRYKKNLKKYQTTHHLTDSDLEMYQRIMDELKKQI IYLNELTNKSRNLKKIEQVELGVASAKGIFKHLVKYPEAITHFSDFLYHKVPEILRASER FLSIKEDKLSTEEITLATNGILSTIRVLSESITDDYERLVSEASEEIALSKKLVERKNG >gi|307679039|gb|GL456758.1| GENE 37 34065 - 34784 1202 239 aa, chain - ## HITS:1 COG:lin1574 KEGG:ns NR:ns ## COG: lin1574 COG0580 # Protein_GI_number: 16800642 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Listeria innocua # 3 235 4 236 272 258 59.0 6e-69 MGTSMMTQLFGEFFGTMILVLLGDGVCAAVNLKKSKAFASGWVVIALGWGAAVTLAVYMS GYMSPAHLNPAVTVAMAITGNFEWGMVLPYIVAQVLGGFIGGLVVWLAYLPHWNITEDKG AILGTFATGPAVRNYPANVLTEIIGTFVLVFGLLAFSQNDLAAGINPMLVGILVLGLGLS LGGPTGYAINPARDLGPRLAHQIIPVKTKGDSDWAYSWVPIVGPILGASLAAVIYLFTI >gi|307679039|gb|GL456758.1| GENE 38 34792 - 36621 2202 609 aa, chain - ## HITS:1 COG:SP2185 KEGG:ns NR:ns ## COG: SP2185 COG0578 # Protein_GI_number: 15901992 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Streptococcus pneumoniae TIGR4 # 1 607 1 607 608 744 63.0 0 MTFSIETRRQSIDALKTQHLDVLIIGGGITGAGVALQASAAKMKTGLIEMQDFAEGTSSR STKLVHGGIRYLKTFDVEVVADTVKERAVVQSIAPHIPKADPMLLPIYDEPNATFNLFSV KIAMDLYDQLADVTGTKYANYLLTKDEVLAREPQLKSEGLQGGGVYLDYRNNDARLVIEN IKQAVADGAHAVSRVQAVGFLYNDEGKITGIQAKDLLTDEQFEIHADVVINTTGPWSDKL RGLDKNDSFTPQMRPTKGVHLVVDKSRLNVPQPTYFDTGKQDGRMVFVVPREEKTYFGTT DTDYHGDFQHPTVEQSDVDYLLEVVNNRYPEVQLTIDDIEASWAGLRPLISANGGSDYNG GNNGKLSDKSIDEVIDVVDRYQKNKTDKREIEEVLNHLEDSLVENKVNPSAVSRGSSLER SADGLLTLAGGKLTDYRKMAEGAMKMIQTILAEEYQKEFTLIDSKNYPVSGGKLNPATVD EELEALAKHGVSKGLSEKDALYLAHLYGSNVPTVFEMIDDAKVIPGLTLTETVSLNYAME EEMALTPVDFLLRRTNHLLFMRDRLDQVKAGVIEEMAQHYQWTAEERARHIETLEKVIEE SDLKNLKVG >gi|307679039|gb|GL456758.1| GENE 39 36642 - 38147 1813 501 aa, chain - ## HITS:1 COG:L0014 KEGG:ns NR:ns ## COG: L0014 COG0554 # Protein_GI_number: 15673228 # Func_class: C Energy production and conversion # Function: Glycerol kinase # Organism: Lactococcus lactis # 1 497 1 498 498 789 77.0 0 MAEEKYIMAIDQGTTSSRAIIFDKKGNKIGSSQKEFTQYFPNAGWVEHNANEIWNSVQSV IAGSLIESGVKPTDIAGIGITNQRETTVVWDKATGLPIYNAIVWQSRQTTPIADQLKEDG YSEMIHEKTGLIIDAYFSATKVRWILDHVEGAQERAENGELMFGTIDTWLVWKLTGDTHV TDYSNASRTMLFNIHDLDWDQEILDLLNIPRVMLPKVVSNSEVYGLTKNYHFYGSEVPIA GMAGDQQAALFGQMAFEPGMVKNTYGTGSFIVMNTGEEPQLSKNNLLTTIGYGINGKVYY ALEGSIFVAGSAIQWLRDGLKMLQTAAESEAVAKASTGHNEVYVVPAFTGLGAPYWDSQA RGAVFGLTRGTTREDFVKATLQAVAYQVRDIIDTMKEDTGIDIPVLKVDGGAANNDFLMQ FQADILNTAVQRAHNLETTALGAAFLAGLAVGFWKDLEEIKAFQEEGQQFEPIMAEEERE DLYEGWQQAVAATQQFKRKNK >gi|307679039|gb|GL456758.1| GENE 40 38424 - 39890 1321 488 aa, chain - ## HITS:1 COG:no KEGG:EF1931 NR:ns ## KEGG: EF1931 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 488 1 488 488 873 99.0 0 MKVETLLEKKAMRQLLTVQQTILAGGTCSVSDLTAFLAVTKASFEKDLEDLHYFLKPFGQ DCQLTYDGQQLSITLSDFFSLNHLIEAFVKESLKFQLLDYLYRNKEFSIVQLTTKFMISE SSLFRKIKELNQLLAAFDLQIKNGQLQGEELQIRYFYFQLYWYITPYETHQKKTMSPLNK RIIEGIETGLGFTFNEHNALKVSLWLSITKKRLAVTSKKYQQLRKKMIDFKEDPLFKQVR QLFFRFSSRYSLELDEGESMIHFVFLITMSVLPESAFDEYSLIRGRRSAVSLADTFILEN VVLYYRPHKFEPTLEKTMAYYFSQIHGKLYFFKGELEVFDRAHIWEKEQQLSSRELASFS TTLLEKALACFDETYQPGDSLHELSLVKYLSVLALIEFKMIGEIKIGIHLAMDALYQAAL TQVLMLSLKNMNGTLVERYQPEQTYDLIVTNYQQTSYQGTPEVYVLSELSSTYDVQQLKK KIRTLREK >gi|307679039|gb|GL456758.1| GENE 41 39880 - 41214 1255 444 aa, chain - ## HITS:1 COG:pli0044 KEGG:ns NR:ns ## COG: pli0044 COG0446 # Protein_GI_number: 18450326 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Listeria innocua # 1 436 1 442 454 166 27.0 6e-41 MKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARY ITEEELRRQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIRG SQTEKLLKYKFLSGALAAVPLLEKSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENL LPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQEISCDSGIFALNL HPQLAYLDKKIQRNLDQTIAVDAYLQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVR TGLVVANNLEEKTHRFIGSLRTMGTKVGDYYLASTGLTETEGLFFPQTLASVIVRQPAPP LQHGTEILGKLIYDKVTQRVLGAQLCSKNNCLEKINTLALSIQTGQTLTDLLQKDYFYQP SLTNIYDITNLMGASAYWRENDES >gi|307679039|gb|GL456758.1| GENE 42 41395 - 41751 443 118 aa, chain + ## HITS:1 COG:no KEGG:EF1933 NR:ns ## KEGG: EF1933 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 118 1 118 118 184 100.0 1e-45 MSATKEQLELFLFYLSETHTKSLSLHDLVTSRPRPEEARILLNINEVFTYYHSARVLYTS VPALENNKSEPFFQAFENFYFELKQHFFNEEDETNQLNERLEEMKIAFEQLTDDYNVL >gi|307679039|gb|GL456758.1| GENE 43 41785 - 41946 229 53 aa, chain + ## HITS:1 COG:no KEGG:EF1934 NR:ns ## KEGG: EF1934 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 53 1 53 53 67 98.0 2e-10 MKQEEVIERLKEELNLPFFNGTLEEKNYSEADYQQIKKELIQYFDDYVRNVEN >gi|307679039|gb|GL456758.1| GENE 44 41992 - 43659 1793 555 aa, chain - ## HITS:1 COG:BH0872 KEGG:ns NR:ns ## COG: BH0872 COG0366 # Protein_GI_number: 15613435 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Bacillus halodurans # 1 550 1 555 559 587 50.0 1e-167 MTNENWKSGTIYQIYPRSFKDTNNDGFGDIKGIIEKLDYLENLGVSFLWLTPMYVSPQRD NGYDIADYYNIDSKFGTMADFEELLNKAHEKNIRIMMDLVVNHTSSAHYWFQEALKGKDN PYRNYYIWKDPVNGKEPNNWVSKFSGSAWEYEPTSGQYYLHLYEKTMPDLNWENPKLREE IITMMKWWAEKGIDGFRLDVINNISKDQSFPNDTLETPKNDGRTYYSDGPRIHEFLHLMN KEVFTPYQLVTVGELSSTTPEQVILYTKPERQELSMAFNFHHMKVDYPNGEKWAVSDYQL TELKKIMAYWQQKMYNEGGWNALFWTNHDQPRALARFLDDEEFRTESAKNLAITEFGLHG TTFVYQGEEIAMKDAYFQNISEYDDRESINAYNMMIARGDSKEYALAALRQKSRDNCRIP MQWTDEKYYGFSTHKPWLMGPTHDEVNVERALEDKNSVFYTYQKLIKFRKEMPIFVKGDF ELIDAENNQVFAYKRVFDDETVLVVSNFTSETIRFDTGINLTEGSQILVANYPRKIVTQE LELQPFEAMMILKNK >gi|307679039|gb|GL456758.1| GENE 45 43674 - 45383 1670 569 aa, chain - ## HITS:1 COG:L37906_2 KEGG:ns NR:ns ## COG: L37906_2 COG1263 # Protein_GI_number: 15672409 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Lactococcus lactis # 120 568 1 405 406 429 58.0 1e-120 MKSNYQELAQAIIVGVGGEDNIEKVFHCITRLRFTLKDIEKVNQEELEKLSAPKVPSVKA FYNTNLNQYHVVIGQAVEDVYTAVDSQLATKDFKNQIDKSAKLPKKQPQGFKEIISHYFQ IIIGTITGSMIPVIGLLAAGGLINGLLAIFTKGNGLINVLDPHSTTYLLISTLSMVPFYF LPVLIGFSAAKQLKADPYVVAAVGAAMIAPNIRNIVSLDHPTVVNFTKGAIETANQAIAA AGVTTNGATAIANYDVHGVLTGWTVTAGKLFQMFGATGPTFNADYFGIPIVLPNYAYSIF PIIVAAAIAAPLGRWLKKVLPIALQPIFRPLITFFVTASIIFIGVGPVISMISSAFGSGV EFLIGNGQNVIQLGIAGLIIGGFYQCLVIFGLHWLVVPIISLQIATTGESSLNMLASYTM LAQGAGTLAVFLKTRKAPVKGLTLPAAISAFCGVTEPAMYGVNLKYPRVFIMSSIGAAVG AGAAGFLNLHMYGFSGSLIGFPNFAAKGVLNPTTQEWVNGNPNNFLVFWVTTILCITVSM ALVWFFGYKDDDVMGTGIEKKNVFKNAVN >gi|307679039|gb|GL456758.1| GENE 46 45543 - 46250 820 235 aa, chain - ## HITS:1 COG:BH0873 KEGG:ns NR:ns ## COG: BH0873 COG2188 # Protein_GI_number: 15613436 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 5 231 4 231 237 143 38.0 3e-34 MTRTKYMEIYESLRDKIDTGIYHEMMPSENTLVKEYGVSRNTIRRALKELTNQGLTVSIP GKGVSIISTPHSLGVSLDKIESFKQFTNRTHLEMSTKVLSFSEEVMTEELTKKLPFQVGE TIYRIVRLRMQKKDPIVVDENYFLKDVVQNLTTEIAEDSIYEYLEKTLNIHVSTSKRVIT VELLTKEDKELLHSHSYDTAVIIRNTAYTQLGKLFEYTISKHRPDKYVFTEVVVH >gi|307679039|gb|GL456758.1| GENE 47 46568 - 47008 606 146 aa, chain - ## HITS:1 COG:no KEGG:EF1936 NR:ns ## KEGG: EF1936 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 3 146 1 144 144 262 99.0 3e-69 MVMRPNLGFYVQTINDIVKTTEDIGEVMNPYYEEVRQAIDKNKVNDLTAERIAEIQAKFK EGTEKYELMLKKVGTLKPTPQVLGIHKKFQHAYTEYVAGCNEMILATDPETGIDADLFNA SEEKQDQATDELTFAITRMSNILLKK >gi|307679039|gb|GL456758.1| GENE 48 47078 - 47614 402 178 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227385040|ref|ZP_03868434.1| acetyltransferase, ribosomal protein N-acetylase [Jonesia denitrificans DSM 20603] # 9 175 2 168 173 159 47 6e-38 MKRKIIFETQRLIVREWQSEDEVELKKFLQDENVMYAYEHAFSDEEVANWLKWNLQSYQE YGYGLWALEKKRTGEVIGECGLTNQLVKGKSYPEIGYHLCVKEWHKGYAIEAAAATKQYA FDVLNFPEVISTIRDTNLASMNVAIRNQMLVRDRYIKTYRGKTMPHYVFSVKNQKNED >gi|307679039|gb|GL456758.1| GENE 49 47684 - 50389 3485 901 aa, chain - ## HITS:1 COG:SPy0623 KEGG:ns NR:ns ## COG: SPy0623 COG0474 # Protein_GI_number: 15674699 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pyogenes M1 GAS # 6 899 3 888 893 1124 66.0 0 MSEEKKTQLSEAFYAQDDTVVLEKMNTTTDGLSAQEAQKRLETYGENVLDEGKKKSLAVK FFEQFKDFMIIVLLAAAVISAVFSHDVVDSIIILVVVILNAIFGVIQEAKAEQAIEALKE MSSPNANVRRDGHVITVKSDELVPGDIVLLEEGDVVPADLRLLEANSLKIEEAALTGESV PVEKEVTILEGTDIGIGDRINMAYSNSNVTYGRGLGVVVGTGMNTEVGKIAGMLASEQET ETPLKQNLNQLGKMLTIAILVIAAVMFVVGMMNGRSWIDMLLTSISLAVAAIPEGLPAIV TIILALGTQKMAKKNAIVRKLPAVETLGSTDIICSDKTGTLTLNQMTVEALYTDGQVLSA STEIPADNMALKIMNFTNDTKIAQDGSLIGDPTETALVQFGLDHAFNVTEKVAAEPRVAE IPFDSDRKLMTTVHELKTGGFLVSVKGAPDELLKRCTEILSNGETSPLDETKRQEILKTN TSLAKQALRVLGMAYKYVETIPAEMSSELVEKDLTFAGLVGMIDPERKEAADAVKVAKEA GIRPIMITGDHRDTAEAIAARLGIIKEGDDDAVITGAELNELSDEKFAQVVGHYSVYARV SPEHKVRIVKAWQQEGKVVAMTGDGVNDAPALKAADIGIGMGITGTEVSKGASDMVLADD NFSTIIVAVEEGRKVFSNIQKTIQYLLSANLGEVLTLFIATMLNWDTLLPVHLLWINLVT DTFPAIALGVEPAERDVMSHEPRGKKSNFFSGGVLSSVVYQGITQGALTLIVYKMSIMFP AHTAANTNLSAQALYDLQHGDALTMAFATLGLIQLFHAFNVKSIYQSIFKVGLFRNKSFN YGILVSFLLLAATIVIPGFNDLFSVTHLDAYQWAIVAGTSFAIIPIVEIVKFFQRKAGKG A >gi|307679039|gb|GL456758.1| GENE 50 50707 - 51357 594 216 aa, chain - ## HITS:1 COG:no KEGG:EF1939 NR:ns ## KEGG: EF1939 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 216 1 216 216 350 99.0 2e-95 MWKKKIVLSFLFYLISALGISLTIQAGIGVSSFNAFNVTFATLTHLKVGTVTTAINFAFL GTCWLLDQQRKIQDYLIILVALIGFGFVINFFLYQLFGSLVFQNYLVKIVLFILGTIIAG IGTGQVVALGVLQFPIEKFCTLISERTRYSFQFYRYLVDIFCVSLALGLSISYHLPIFVR EGTVISLFLLSWVISWSIKRGQQRILRIQIKKLESE >gi|307679039|gb|GL456758.1| GENE 51 51447 - 52112 662 221 aa, chain + ## HITS:1 COG:ECs3055 KEGG:ns NR:ns ## COG: ECs3055 COG0664 # Protein_GI_number: 15832309 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Escherichia coli O157:H7 # 22 219 2 208 219 117 34.0 2e-26 MLKTAYQQSPKQELAKNTPFFNETDLKHSFIIDFENQEFIHHQAEPLNYLFYLIKGKAKI LKTERNGRQSIVQFLTTGDLIGDLTLVQAETITKDVIALGETCCLAVPLAYAETVLKNKV LFMQQLSHYLGKKMLQRVDHFTTNQTYELSYRLAELLLVAANHEDVYKEKHTEIAEYLGV SYRHLIYTFKQFRERGFIQKQGTAYHINRLALHSFVQKMKS >gi|307679039|gb|GL456758.1| GENE 52 52184 - 52579 564 131 aa, chain + ## HITS:1 COG:no KEGG:EF1941 NR:ns ## KEGG: EF1941 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 131 1 131 131 231 97.0 8e-60 MEQASFTVSSWQEQPIDNLNENFPVNQASASYQLSGALSGTASVEYLMTYQGSSMADGLE AVAQVVGFLHFEGTYLGKKGTFTACEKGTFTQGLLDCPGELFQASGELSGLSGRYTYEFS QEEALLHLDFV >gi|307679039|gb|GL456758.1| GENE 53 52689 - 53870 1096 393 aa, chain + ## HITS:1 COG:lin2916 KEGG:ns NR:ns ## COG: lin2916 COG0477 # Protein_GI_number: 16801975 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 2 381 3 386 396 268 43.0 1e-71 MKNTRNTVPSLLIIILLVGFPQISESIFTPILPALSSAFNIHDSVAQLTMSIYFVAFAVG VLFWGILSDTIGRRPAMLLGILCYLIGNIGLFLSPTFPWLLFFRLIQAFGASVGSVITQS MMRESFNDLQRGKIFAQTSAALSLSPAIGPLVGGLVQTYFGYQHVFSTLIVMAVLLLFYS FYRLPETFHLGNTLTKASFWSVAKRLSFDSKVWCYGLLIGGINGLLFSYYAEAPFIFINH FGFSSVQYGFLGLVLAVSSILAAVLINWLLGYWSAEKIAFAGLLLSIFAACCLLIMTQFE SIIGLILFIFLFFLGINITLPNALSMALKGYESVIGTASGIFSFVYYLFVSFFTYLISYF HNGTIWVLPLYFLSFACLLAFSYYVIVYRKTLK >gi|307679039|gb|GL456758.1| GENE 54 53907 - 55742 1601 611 aa, chain - ## HITS:1 COG:mll7848 KEGG:ns NR:ns ## COG: mll7848 COG1368 # Protein_GI_number: 13476512 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Mesorhizobium loti # 9 609 39 641 653 194 27.0 5e-49 MKKRVEKFRRWPYRYLLYGIGFILLIIFSNLYLQWCQNNLSVDLAFKFAFSWHTEKFFLG CFVLSVFLLFLCSLAGSLGVGALLYSVIIGVLGFADYQKMFYRVEPIYPDDLKMITEVSL LKEMVGLWPFIFVVALGCVALFFLGKAFYKSFFLSKKKQTIRVLSLVLSIGLFSYIGDFN NPQNLLRKAYNKTALWIPYSQKMNYYNTGFIGGFLYNLKVEAMDQPKGYSKEAISEITQK YQKLAEAKTVPSNEQPNIVFVMSESFSNPDHLKGLSIIGNPLADYQQIADKTYSGQMLSQ NYGGGTANIEFEALTSFSMELMNAQMTTPYTMMIPKMTELPSIVSLLKEQKYQTTAIHPY NTSMYKRKDVYKILGFDQFINEKTMNYTDKLENNPYISDQAAYQEVTTLLKEKEQPQFIH LVTMQTHMPYENKYTTSNYFSQGNGNQVALNNYLQDIAYSSEALKNFLQEIEKMPKRTLV VFWGDHLPSIYDENIQALNEGAALHQTEFLMYDTANQLTEKNQHQATISPFYFAPSLFQQ SGLPQSGFYAMLNEVQEQLPAFEKGNYYLGGEWKKTVEMNKKQEQLYEEYRLIQYDIVSG KQYSLENQFFS >gi|307679039|gb|GL456758.1| GENE 55 55951 - 56100 249 49 aa, chain + ## HITS:1 COG:no KEGG:EF1947 NR:ns ## KEGG: EF1947 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 49 1 49 49 79 100.0 4e-14 MTYKVKNIQYRIQLDTDKNIFIVFDAKNESKTATGHTIEEAIAHLKQLN >gi|307679039|gb|GL456758.1| GENE 56 56251 - 56601 429 116 aa, chain + ## HITS:1 COG:lin0899 KEGG:ns NR:ns ## COG: lin0899 COG5646 # Protein_GI_number: 16799972 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 2 110 8 116 130 101 49.0 3e-22 MTIIANYIRQQPQHQTQLTEIYQAILAVVPQETTEKIAYGMPTFYLNGNLVHFAAAKQHL GFYPTPSAIQRFSKELRPFKTSKGAIQFPYTQELPLSLIQEIVKFRVQENMKTGSH >gi|307679039|gb|GL456758.1| GENE 57 56612 - 56962 427 116 aa, chain - ## HITS:1 COG:lin0147 KEGG:ns NR:ns ## COG: lin0147 COG4898 # Protein_GI_number: 16799224 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 115 1 115 116 160 73.0 4e-40 MTKPKIYTMTFASVYPLYIQKAERKNRTQAEVDEIIYWLTGYDEKGLQQQLAQKVTMETF FEEAPNFNENAQLIKGVICGYRVEEIEDPLMQKIRYLDKLIDELAKGKAMEKILRT >gi|307679039|gb|GL456758.1| GENE 58 57036 - 58040 1260 334 aa, chain - ## HITS:1 COG:lin2106 KEGG:ns NR:ns ## COG: lin2106 COG2222 # Protein_GI_number: 16801172 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted phosphosugar isomerases # Organism: Listeria innocua # 1 334 1 331 331 407 56.0 1e-113 MLKFNEEQQIKDIRGALALRSDVEKVVDQVWTKGFDAVYYLGIGGTYASAMQAVTYANGK SNLPIYVQHAAEYYTTGNKRLTEKSFVILSSVTGTTQEVVQAVQEIKKVGATLFGFIDAK DSLLADLCDYVVTYPAPGTEQIKFFMVADRLMQKNNEFTDYENYYQELEEYLPTGLAEAE KSADAFGLAFAEKHRHDSIHYFIGAGNQWGAVYSYAMCYWEEQSWLRSKSIHAAEFLHGT LEIVDETTPVTLFIGEDEQRPLAERVAKLLPKICANYTIIDSKAYELPGISEKYRGRVIS FLLMHAVTQRIDAHVEKLNCHPLEIRRYYRQFDY >gi|307679039|gb|GL456758.1| GENE 59 58034 - 59110 949 358 aa, chain - ## HITS:1 COG:lin0034 KEGG:ns NR:ns ## COG: lin0034 COG0449 # Protein_GI_number: 16799113 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Listeria innocua # 3 348 4 354 361 301 45.0 1e-81 MKTMLDYINEEQAALTQILNQFQLTDTDVSKVTHCLILATGSSHNACQAAKVYLEEVAPI YVEIQEPFNFAHYGKVDDRFDLVVAVSQSGKSTSTIDAIAKIKNQTSVKTVALTSDVTSP ITEVVDEVLDLKMGLETVGFVTKGYTATLLNLFLFGLKLGYQKHQLTKVEVEEELAKLAK AIQEIDSVIYKTEQFWQKTKKELTEGTRFIAIGYGPNIGTAKEFETKFTETVRLPSQGFE VEAYMHGPYLEADTTHLLFFIENQSPIQARSQALRNYLASYVGQCYTITTRSTRASNTLE LASDVEEKISPLLLVIPFQYLAYQVATSKGIDLSQRIFDDFDCVLKSKIAKKEGNQPC >gi|307679039|gb|GL456758.1| GENE 60 59121 - 59951 932 276 aa, chain - ## HITS:1 COG:STM4538 KEGG:ns NR:ns ## COG: STM4538 COG3716 # Protein_GI_number: 16767782 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Salmonella typhimurium LT2 # 6 276 9 278 278 377 69.0 1e-104 MTKTSKTKTENLITKKELNQVFWRSFQMEFSWNYERQMNMAYVYAMIPILKKLYPQKEEM AAALKRHLAFFNTTPHIVTFILGINAAMEEENVLDENFEVGTIDSIKTSLMGPLAGLGDS FFWGTLRLIATGVGTSLALQGNVLGPILFLLIFNVPHVIVRYLLNRWGYKLGTGFLKKIQ ANGMMESLTLGASIIGLMVVGAMTASMIDLTIPITISGSGKNAVTVQSIFDDIMPKLLPL ASFGFVFYLLKKEVKPLAILGGMAIVGILGSLIGLF >gi|307679039|gb|GL456758.1| GENE 61 59935 - 60726 868 263 aa, chain - ## HITS:1 COG:STM4537 KEGG:ns NR:ns ## COG: STM4537 COG3715 # Protein_GI_number: 16767781 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Salmonella typhimurium LT2 # 4 263 3 259 259 311 71.0 7e-85 MIGQAILLGCIAFIAQSEYALGTSLLSRPIVTGLFVGIVLGDVKTGVIMGATLELAFIGS FSVGASIPPDVVTGGILGTAFAITAGAGTETALVLGLPIATLTLILKNIYLGLLIPIMSQ KADQYAEEGAYKGVERMHLLAGFGLSFMLALIVTISFAVGSNTIKGLLDLIPEFIQHGLS VATGIIPALGFAMLARLLINKQVAPYFFLGFVLMAYFKLPVTGVAILGAITAVIVVNIMN YAKGKNETIQTTSGEVIDDDEDF >gi|307679039|gb|GL456758.1| GENE 62 60742 - 61212 569 156 aa, chain - ## HITS:1 COG:STM4536 KEGG:ns NR:ns ## COG: STM4536 COG3444 # Protein_GI_number: 16767780 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Salmonella typhimurium LT2 # 1 149 1 149 153 206 71.0 1e-53 MIKLLRVDHRLLHGQVAFSWTQGLGADCILIANDDVPKNDIRKTTIKLAKPAGVKLVIKT IEDAIAALKSGVTEKYKLFIVVESVEDAYRLATAYPEIKEINLGGMKVRENTRNISKAIN ITPDEEKMVKELVANGCEVEIRQVPNDKKVAALNVL >gi|307679039|gb|GL456758.1| GENE 63 61224 - 61643 536 139 aa, chain - ## HITS:1 COG:STM4535 KEGG:ns NR:ns ## COG: STM4535 COG2893 # Protein_GI_number: 16767779 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Salmonella typhimurium LT2 # 1 128 1 128 140 95 36.0 3e-20 MERKIILATHGNFAAGIQTSLALICGETKNVECLCAYMEQPYDLAKTVKDILKNNQQNEL IVITDLFGGSVNNEFFNYVGKQAMHLISGLNLATLIEIYTQINTVDSLVDLVKRAVENGQ ESLCYCNELSSKEILEEEF >gi|307679039|gb|GL456758.1| GENE 64 61715 - 64486 2191 923 aa, chain - ## HITS:1 COG:STM4534_1 KEGG:ns NR:ns ## COG: STM4534_1 COG1221 # Protein_GI_number: 16767778 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Salmonella typhimurium LT2 # 1 454 1 458 460 421 48.0 1e-117 MLKTQIVDYLRNQTAFFEPSLVSEIFTASNIATTFSIKRNTASHYLNQLNEEGILVKINT RPVYFFHKEAFQQQNYLLKRTVYQSFQEMIDEQPAFDRKSDFFQSVIGYRGSLAQTIEQL KMAALYPGGGLPVLITGESGTGKSFLASLYYQFCLSKELLDDSAPFVTVNCAQYANNPEL LTSQLFGHLKGAFTGADSDKIGAFQSAEGGVLFLDEVHRLSPEGQEKLFTFLDQGIIYRM GETNRPIPVTCRLCFATTEEISSTFLTTFLRRIPIQIKIPSLAERTQAERKQLIMRAFYE EQQAIQKAVTITPQVIQLLENHHYVGNVGELRNNIKIITARSFAANLDKRVIPITLHDLP KEFLDQSIRLAPDENELPIRLDEQTNLVSLLEETELAQRRIIQSYERILRLYVSHHHHLS TANNDISKEIERLFDDLLFEKKREKNHEMLLFITQNIRQLLETIESSYQIRFNGSLVYAL STYLFQRRCIDWFPEKEPTTVIDELLTEVQTKLATSYGYAEQLLTLVKRSLDIELSQMDR IIVTIYLHYSGSVKESHYPKAVIVAHGYATASSIANVANRLLNLPIFQSFDMPLDVTPKK ISEHLIHYMERQETRNGLVILFDMGSLKEIYQYFPAEEEGPFLLMNNVTTSLALSIGEAI KDEVSFEELPQKALTVHPNEWEIILPENKTERVILTTCSTGIGTAVKIRDLLEKSLPAEA QLKIIPCEYNQLRNAESIKESFPEFEIVGIIGTNNPSSNDLPYISLEELIAGKGITTLLE WTKRELTKDMLSYVNHELIRNFSLDRVIQSVTILDTEKIIRQVEVFLIQLEERWQQTIQN DRKLAVYVHVSCLIERLIRNEPIENYNGAEQLKQCQRTVLQELKEAFSVIEKVYSVNIPE SELFYVYDVLFGKTEFNNAESDF >gi|307679039|gb|GL456758.1| GENE 65 65057 - 66418 1222 453 aa, chain - ## HITS:1 COG:lin2806 KEGG:ns NR:ns ## COG: lin2806 COG0232 # Protein_GI_number: 16801867 # Func_class: F Nucleotide transport and metabolism # Function: dGTP triphosphohydrolase # Organism: Listeria innocua # 3 451 1 461 465 280 36.0 3e-75 MKMNWRQLVGTYRISDNGKQYQNDWLNKQVDLATELRKSFDSDYRRVIKSDAFRRLQDKT QVFPLERNDFVRTRLTHSLEVAMHSRDILRLVISQLNERNIEVMELSECYRLLETAALIH DIGNPPFGHFGEEAIRIWFEKNGPLYACWSDFSEQQQNDFLNFEGNAQTIRLLTKLHHDN GTSKAGMKLTATTLDTVIKYTASSDQLNKQQLLSKKVGYFYSEKQVFNAIKFATGTQNKR HPLVFLLEASDDIAYTFSDIEDAYNYGLYSYQDLKQFVDAQTGTKKFLMLEKDKTEEATL QEFLRKTQRAVCQSVAKNFANHYDLIMRGIYHNEIIIEDCDEVKCFQALKNFSRVYVFQT KTILDQEVLGFNIINRLLDEFVPVVLKYEKVSMNKYEERIFNNISESAKALYRREAKNAT EAEKDYYRLKMAVDFVCNMTDGYAKKVYDTLFT >gi|307679039|gb|GL456758.1| GENE 66 66435 - 67259 691 274 aa, chain - ## HITS:1 COG:no KEGG:EF1959 NR:ns ## KEGG: EF1959 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 274 1 274 274 546 100.0 1e-154 MSNGKKIFISHSSKDQEYVDAFIQLLKKFGFRTQDIFYSSTIETGVQPGELIFDTIKREL TNQPVMLYFLSDHYYQSIPCLNEMGASWMLSDKHYPIALNNFSMKDMKGVISSERLAIAF NDKTSTNEINCLLKKLSHDTDVQAEPDFELNVEKNIQPFQNKLTQLIRQASYLKPDEKGY FETILSTHRPVYGTAKGVYDCFKLPSLIEPKSLGLDTLSEDESHWLFFFLTWGTFQEGEK VRFKLKKDKAYNNREFSDIGKCKNIYVSYLEKVE >gi|307679039|gb|GL456758.1| GENE 67 67612 - 68910 1694 432 aa, chain - ## HITS:1 COG:SP1128 KEGG:ns NR:ns ## COG: SP1128 COG0148 # Protein_GI_number: 15900994 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Streptococcus pneumoniae TIGR4 # 1 430 1 433 434 667 82.0 0 MSIITDIYAREVLDSRGNPTIEVEVYTESGAFGRGMVPSGASTGEYEAVELRDGDKARYL GKGVTKAVDNVNNIIAEAIIGYDVRDQMAIDKAMIDLDGTPNKGKLGANAILGVSIAVAR AAADYLEVPLYHYLGGFNTKVLPTPMMNIINGGSHADNSIDFQEFMIMPVGAPTFKEALR MGAEVFHALASILKGRGLATSVGDEGGFAPNLGSNEEGFEVIIEAIEKAGYVPGKDVVLA MDAASSEFYDKEKGVYVLADSGEGEKTTEEMIAFYEELVSKYPIISIEDGLDENDWDGFK KLTEVLGDKVQLVGDDLFVTNTTKLAEGIEKGIANSILIKVNQIGTLTETFEAIEMAKEA GYTAVVSHRSGETEDSTISDIAVATNAGQIKTGSLSRTDRIAKYNQLLRIEDQLGDVAEY KGLKSFYNLKNK >gi|307679039|gb|GL456758.1| GENE 68 69042 - 69797 939 251 aa, chain - ## HITS:1 COG:L0006 KEGG:ns NR:ns ## COG: L0006 COG0149 # Protein_GI_number: 15673116 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Lactococcus lactis # 2 251 3 252 252 386 80.0 1e-107 MRKPIIAGNWKMNKTLSEAQSFAEAVKNAVPSNDVVDAVIGSPALFLAPLAWNLKDSEVK LAAQNCYWENAGAFTGENSPAAIADLGVDYVIIGHSERREYFHETDEDINKKAKAIFANG MTPIFCCGETLETYEAGKTAEWIEGQITKGLVGLSNEQVASMVIAYEPIWAIGTGKSADA NIADEICGVVRSTVEKLYGKEVSEAVRIQYGGSVKPENIAEYMAKENVDGALVGGASLEA DSFLALLDAVK >gi|307679039|gb|GL456758.1| GENE 69 69846 - 71039 1466 397 aa, chain - ## HITS:1 COG:lin2552 KEGG:ns NR:ns ## COG: lin2552 COG0126 # Protein_GI_number: 16801614 # Func_class: G Carbohydrate transport and metabolism # Function: 3-phosphoglycerate kinase # Organism: Listeria innocua # 1 397 1 396 396 592 79.0 1e-169 MAKKTIKDVDLKDKKVLVRVDFNVPLKDGVITNDNRIVAALPTIKYVIENGGKAILFSHL GRVKTEEDKAGKSLKPVAERLSELLGQPVTFVPETRGKELEDAVNNMKDGDVLVFENTRF EDVDGKKESGNDAELGKYWASLGDVFVNDAFGTAHRAHASNVGIASTGIPTVAGFLMEKE IKFIGEAVENPKRPFVAILGGAKVSDKIAVIENLIEKADKILIGGGMAYTFMKAQGYSVG LSLLEEDKVDLAKSLMEKAGDKLVLPVDTVVSKEFSNDAPFHTVPSTEIPDDEEGLDIGE KTIELFANELQGAKTVVWNGPMGVFEMSNFAKGTIGVCEAIANLEDATTIIGGGDSAAAA IQLGYENKFSHISTGGGASLELLEGKTLPGLASINDK >gi|307679039|gb|GL456758.1| GENE 70 71166 - 72167 1317 333 aa, chain - ## HITS:1 COG:lin2553 KEGG:ns NR:ns ## COG: lin2553 COG0057 # Protein_GI_number: 16801615 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Listeria innocua # 1 333 1 334 336 549 83.0 1e-156 MTVKVGINGFGRIGRLAFRRIQDVEGIEVVAINDLTDAKMLAHLLKYDTTQGRFNGTVEV HEGSFNVNGKEIKVLANRNPEELPWGELGVDIVLECTGFFTSKEAAEKHLTAGAKRVVIS APGGNDVPTIVYNTNHETLTGEETVISGASCTTNCLAPMAKALHDNFGVVEGLMTTIHAY TGDQMTLDGPHPKGDFRRARAAAANIVPNSTGAAKAIGLVIPELNGKLDGAAQRVPVATG SLTELVTVLDKEVTVDEVNAVMEKAANESYGYNTDEIVSSDIVGMTYGSLFDATQTKVMT VGDKQLVKTVAWYDNEMSYTAQLVRTLEYFANL >gi|307679039|gb|GL456758.1| GENE 71 72207 - 73244 992 345 aa, chain - ## HITS:1 COG:lin2554 KEGG:ns NR:ns ## COG: lin2554 COG2390 # Protein_GI_number: 16801616 # Func_class: K Transcription # Function: Transcriptional regulator, contains sigma factor-related N-terminal domain # Organism: Listeria innocua # 13 342 13 342 348 325 50.0 8e-89 MLKEFKMIEAVAPDMLDVLQERFQILRNIYWMQPIGRRSLSETMGITERVLRTETDVLKQ LNLIEPSKSGMTLTERGLEVYQGLELVMNQLLGMHQIEKEMTQYFGIQRCIVVAGDSDIQ KKVLSDFGDVLTNTLNLLLPNGENTIAVMGGTTMAMVAENMGSLETEKRHNLFVPARGGI GEAVSVQANSISAVMANKTGGNYRALYVPEQLSRETYNSLLQEPSIQEVLTLISHANCVV HSIGRALHMAARRKMSDDEMVMLKQKNAVAESFGYFFDEEGKVVYKIPRIGLQLKNLQEI PYVVAIAGGKTKAKAIRAYMKNAPKQTWLITDEAAANEILKGVTL >gi|307679039|gb|GL456758.1| GENE 72 73665 - 74543 902 292 aa, chain - ## HITS:1 COG:SP2113 KEGG:ns NR:ns ## COG: SP2113 COG1284 # Protein_GI_number: 15901928 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 3 290 25 312 313 320 52.0 2e-87 MKKIYDGLPVHDYTTKFSVSIVYAILASIAMNFFYQPGNIYSSGLTGLAQILTTLSTKIV GFNVPVSITLYLLNVPLFFIAWKKIGKKFTIFTFITVTLTSLFMHIVPQTVMTQDPIICA IFGGAISGSGIGFVLKNGVSSGGLDILSITIRKKTGRSVGSISIYFNALIVFVAGYLFGW QYMFYSALSIFVSGKVTDAVYTKQKKMQVMIVTKNPDRVVDEIQKKMRRGITIIHEAEGA YRHDRQTVLLTIVTRFELPSLEAAMKESDPNAFVSISDNVKILGRFYEEDYK >gi|307679039|gb|GL456758.1| GENE 73 74686 - 75255 845 189 aa, chain - ## HITS:1 COG:L86338 KEGG:ns NR:ns ## COG: L86338 COG4475 # Protein_GI_number: 15672471 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 3 182 1 180 180 204 60.0 1e-52 MTIDEKMLKEQLVTITEEVITAGNLQKGDLFVLGCTTSEVVGGVIGKNSSAEVGQWIVST LIEQLDKKGISLAVQGCEHINRALAMERRVAEEKGFEIVSVVPQLHAGGSCSVAAFEKFD EPVEVEHIVAQAGIDIGDTSIGMHVKHVQVPLRLSIRTLGAAHVTALYSRPKYIGGPRAH YETTQERNR >gi|307679039|gb|GL456758.1| GENE 74 75252 - 75758 706 168 aa, chain - ## HITS:1 COG:SP1597 KEGG:ns NR:ns ## COG: SP1597 COG4720 # Protein_GI_number: 15901437 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 2 154 6 152 153 105 43.0 5e-23 MTRKISLYAVITALTVAVSMVFIIPVPATNGFVTLADAGIYIASLLFGPIGGLTVGALSG GLIDLLSGYPQWFVFSLLIHGGQGWLAGHFFNKNKKMQTLGLLLASLLMISGYALATSWL YGVGAGIASLPGNIIQSLFGVIVALPLSQTLKRVLPKNGRLEERRMNK >gi|307679039|gb|GL456758.1| GENE 75 75742 - 76557 729 271 aa, chain - ## HITS:1 COG:L0202 KEGG:ns NR:ns ## COG: L0202 COG0351 # Protein_GI_number: 15672469 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Lactococcus lactis # 2 241 8 249 262 182 40.0 6e-46 MTKIILTIGGSDPFSGGGIQTDLKTFENHQVFGLSTLTCLATAPKNHFQIHDLETSLVKE QLASIPAGSLDGIKIGLIHSEESMLQIATFLKKHAGLPVVLDPVLAFKETTSVYEKRYMQ LLIEKLFPFATIITPNLKEAELLIGRKLTTVEEVQQAAEELNSLGAATVVIKGGNRWLGQ EARDFFYDGQQHIQLVKEKVMAHTIDGAGCSFASAIGANLVKGYPLIEAVDLAKTYVHEA IVSGVQLNAAFGSVWHEGLLAGGVADNDKKN >gi|307679039|gb|GL456758.1| GENE 76 76732 - 78501 2300 589 aa, chain - ## HITS:1 COG:lin1554 KEGG:ns NR:ns ## COG: lin1554 COG0173 # Protein_GI_number: 16800622 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl-tRNA synthetase # Organism: Listeria innocua # 1 583 1 584 591 804 67.0 0 MAKRTTYCGNVSAEFIEKEVVLKGWVQKRRDLGGVIFIDLRDREGIVQVVFNPEKSKEAW EIADKCRSEYVIEVKGQVVYRDKEAINPKMKTGEFEVMATDITILNTAKTTPFTIEDDNN VNDELRMKYRYLDLRRPSMTNNIKLRHQVTKTIRHYLDNHDFLDIETPYLGKSTPEGARD YLVPSRVHAGHFYALPQSPQLFKQLLMGAGFDRYYQIVRCFRDEDLRGDRQPEFTQIDIE TTFLTPEEIQTYTENMLAEVMKETKGIEISVPFPRMSYDEAMARYGSDKPDTRFAMELID VAEVVKDVDFKVFQAALENGGHVKALNAKGAADKYSRKDMDNLGKYVSQFGAKGLAWLKV EEDGLKGPIAKFLTEVSDELIAATNAEVGDILMFGADKPEIVAAALGAVRTRLGKELGLI DESKFNFLWIVDWPLFEYDEEAGRYVSAHHPFTQPKAEDVARLATDPASVYAEAYDVVLN GYELGGGSLRIHTRELQEKMFETLGFTKEEAQDQFGFLLDALDYGFPPHGGIALGLDRLA MLLAGEENIREVIAFPKNGKAIDPMNNAPSLVSPLQLFELNIDVTAIDE >gi|307679039|gb|GL456758.1| GENE 77 78519 - 79820 1673 433 aa, chain - ## HITS:1 COG:SP2121 KEGG:ns NR:ns ## COG: SP2121 COG0124 # Protein_GI_number: 15901936 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Histidyl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 426 1 424 429 552 64.0 1e-157 MSYQKPKGTNDILPGTSEKWQFVEETARLIFKDYQYQEIRTPIFEHYEVISRSVGDTTDI VSKEMYDFYDKGDRHVTLRPEGTAPIVRAFVENKLYGPEYTKPYKTYYMGPMFRYERPQA GRLRQFHQIGVEAFGSENPALDVEIMAMALDFFKQLGIQQIKLVINSLGDKETRATYRQA LIDYLEPHMAELSEDSQRRLHENPLRVLDSKDKKDKVIVAEAPSILEYLNEPSKAHFEAV TDMLDLLEIPYEIDSNMVRGLDYYTHTIFEIMSEAPKMGAQSTICAGGRYNGLVEELGGP DTPGFGFGMGIERVLLTMEAEEVVIPALSELDAYVVGIGSETNVAALQLVQSIRNFGFSA DRDYMNRKPKAQFKTADKLQAKLVLTIGENELNEGIVNVKSMATREEKAFPLSTIHDSFD EVYDEMMTKMIEE >gi|307679039|gb|GL456758.1| GENE 78 80178 - 80624 590 148 aa, chain - ## HITS:1 COG:SPy1980 KEGG:ns NR:ns ## COG: SPy1980 COG1490 # Protein_GI_number: 15675771 # Func_class: J Translation, ribosomal structure and biogenesis # Function: D-Tyr-tRNAtyr deacylase # Organism: Streptococcus pyogenes M1 GAS # 1 146 1 145 147 175 60.0 3e-44 MKVVIQRVSQAQVAIEEQIVGQIKQGFMVLVGIHQEDTPEDVAYVVGKISKLRVFEDDEG KMNRSIQEIEGSILSISQFTLYAKTKKGNRPSFIEAARPDVAIPLYELFNQQLEAEGIAV ATGEFGADMQVSLTNDGPVTIVIDTREK >gi|307679039|gb|GL456758.1| GENE 79 80648 - 82861 2591 737 aa, chain - ## HITS:1 COG:lin1558 KEGG:ns NR:ns ## COG: lin1558 COG0317 # Protein_GI_number: 16800626 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Listeria innocua # 1 734 1 735 738 981 66.0 0 MPKEEILTGPAVIKIVSTYMGPEHVELVQKALTYAEKAHEGQVRQSGEPYIIHPIQVAGI LAELHMDPHTVATGFLHDVVEDTDVTLDDLKEEFGEDIAMLVDGVTKLGKIKYKSHEEQL AENHRKMLLAMAQDLRVIMVKLADRLHNMRTLKHLREDKQRRIAQETLEIYAPLAHRLGI SRIKWELEDTALRYINPNQYYRIVNLMQSKRDEREAYVAEAVEDIRLATEDLEIYAEIYG RPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVDSIKDCYAVLGAIHTRWTPMPGRFKDYI AMPKANMYQSIHTTVIGPKGNPVEVQIRTHEMHQIAEFGVAAHWAYKEGKAEKIETDELT KQVDWFHEIIELQDESYDASEFMQGVKEDIFSDKVYVFTPSGDVTELPKGSGPLDFAYSI HTEIGNKTTGAKVNGKMVQLDYVLKNGDIIEVLTSPNSFGPSRDWLKMVKTSKAKNKIKR FFKEQDREDNIIKGHDAVIKYMTEIGFTPKEFLTKNKMAEVLDKFKFQTEDDLFAAVGYG EVSAQVVCNRLTEKERREQELERQRQEAEELLNQPAKKESEKMKVRHEGGIVIQGVDNLL IRLSRCCNPVPGDEIVGYITKGRGVSIHRADCPNVQHQEELAQRLIEVEWEDTEHSRKEY AADLEIYGYDRSGLLSDVLQVISSMTKNLVGVEARPSKDKMAQIHVTVKIQNLSHLKTIV DKIKSVPDVYSVRRTNG >gi|307679039|gb|GL456758.1| GENE 80 83076 - 83828 745 250 aa, chain - ## HITS:1 COG:lin1507 KEGG:ns NR:ns ## COG: lin1507 COG1385 # Protein_GI_number: 16800575 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 248 1 249 255 235 49.0 7e-62 MQRYFMKEDYQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSV YFKEISKEEMDKELPIEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHK KRAAKEKRLQKIATEAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEK SQLAQVLSTCQPGARLCVLFGPEGGFAPQEIEQFLQAGAKLCGLGPRILRAETAPLYLLS AVSYQMELLN >gi|307679039|gb|GL456758.1| GENE 81 83830 - 84777 1600 315 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227519318|ref|ZP_03949367.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis TX0104] # 1 315 1 315 315 620 100 1e-177 MKWTEVKVETASEAVEAISNIMMEAGASGVAIEDALDIENFESDLYGEILDKEQFTHIKE GAIVMAYFPETTFLPEILPFMKENILRLPEYGLSIGKNEMTISEVAESDWATAWKKYYHP VRVTRFLTIVPSWEAYHAQDEAEKIITLDPGMAFGTGTHPTTRLTLQALETVLRGGETVL DVGTGSGVLSIASRYLGAKDVYAYDLDEVAVAAAKENMDLNPIAADVHVSANDLLKGIDH SADVIVANILADIIVLMIEDAWRLLKQDGTFIISGIIEDKKAMVLEALTKVGFVVDQLFN QGDWYAIILKKPEEE >gi|307679039|gb|GL456758.1| GENE 82 84793 - 85278 756 161 aa, chain - ## HITS:1 COG:no KEGG:EF1977 NR:ns ## KEGG: EF1977 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 161 1 161 161 282 100.0 3e-75 MKKATMLTYLEEQLEKHLGDYEVGLDWDRKNHTIEVIVRLYAENNEQVAIDDVDGTLSEE EFIEFEDGLLFYNPQKSVVDDEEYLVTIPYEGKKGLRKAVLDGFIHYLKVVLDEGQSDLL DFLSDETAEVFELHWEPADFEAMIKKVAETEKEQWIAYPSY >gi|307679039|gb|GL456758.1| GENE 83 85235 - 85912 843 225 aa, chain - ## HITS:1 COG:SA2134 KEGG:ns NR:ns ## COG: SA2134 COG2094 # Protein_GI_number: 15927924 # Func_class: L Replication, recombination and repair # Function: 3-methyladenine DNA glycosylase # Organism: Staphylococcus aureus N315 # 8 198 3 192 202 186 46.0 2e-47 MKETINIFNTKTTEEVAQYLLGMYLEHETATGVLGGYIVDAEAYLGPDDEAAHSFGLRKT PRLQAMYDKPGTIYLYTMHTHLILNMVTQEQGKPQGVMIRAIEPVEGVDKMIENRQGRQG VELTNGPGKLVAALGIDKQLYGQSIFSSSLRLVPEKRKFPKKIEALPRIGIPNKGRWTEL PLRYVVAGNPYISKQKRTAVDQIDFGWKDEENEKSNNAHILRGTT >gi|307679039|gb|GL456758.1| GENE 84 86041 - 87318 1571 425 aa, chain + ## HITS:1 COG:lin1549 KEGG:ns NR:ns ## COG: lin1549 COG2256 # Protein_GI_number: 16800617 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Listeria innocua # 3 425 4 426 427 594 69.0 1e-170 MQQPLAYRMRPRHLDEVVGQQHLVGPGKIIRRMVEAKMLSSMILYGPPGTGKTSIASAIA GSTNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI IMIGATTENPYITINPAIRSRTQIFEVKPLTETDIQQAIQEALTDSTRGLGDYPVHLEEK ALQHSTRATNGDLRSALNGLELAVKSTPKNEQGEIKITLPIIEECVQRKALTHDKDGDAH YDVISAFQKSIRGSDVDAALHYLGRLVEAGDLPIICRRLMVIAYEDIGLGNPAAAARTVT AVQAAEKLGFPEARIPLASVVIDLCLSPKSNSAVTAIDAALADIRQGSVGDVPDHLRDAH YAGAKELNRGIGYQYPHNFENGWVNQQYLPDKLKEARYYEPIDIGKYEQALHQQLKRIQE WKQKK >gi|307679039|gb|GL456758.1| GENE 85 87646 - 87924 281 92 aa, chain + ## HITS:1 COG:no KEGG:EF1980 NR:ns ## KEGG: EF1980 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 92 19 110 110 114 100.0 2e-24 MIRILVLLLAVVTGVASYYLMKKSAAFLPLLKKETATESQQFIERFGRYYLIIAILGVLA AIFNRPLLSIGFIFFVLLLSTLFSLTFAKKMS >gi|307679039|gb|GL456758.1| GENE 86 88240 - 88713 705 157 aa, chain + ## HITS:1 COG:lin1615 KEGG:ns NR:ns ## COG: lin1615 COG0589 # Protein_GI_number: 16800683 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Listeria innocua # 1 147 1 147 152 161 57.0 4e-40 MLQQYQKIMIAIDGSDEADLAFKKAVNVAKRNDAELLLAHVVDTRSFQSVSSFDGALAEE AMSMAKETLDTYQQQAVDMGQTKVSSVLAYGSPKNIIAKELPKEYNIDLIMLGATGLNAV ERLFIGSVSESVIRNASCDVLVVRTDLDNKLPKNEEK >gi|307679039|gb|GL456758.1| GENE 87 88825 - 90012 1541 395 aa, chain - ## HITS:1 COG:SPy0109 KEGG:ns NR:ns ## COG: SPy0109 COG0282 # Protein_GI_number: 15674332 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Streptococcus pyogenes M1 GAS # 1 395 1 395 398 507 65.0 1e-143 MSKTIAINAGSSSLKWQLYQMPNEEVIAKGIVERIGLKDSIFTIKYGEGQKYEVIVDIDN HEVAVKMLLDQLIDLNILGSYDEITGVGHRVVAGGEEFKDSVVITDEVLEKIEALSELAP LHNPANAMGIKAFKHILPEIISVAVFDTSFHTTMPEHNYLYSVPREYYEKFAARKYGAHG TSHRYVSQRAAEMLGRPIEDLKIITCHLGNGASITAVDGGKSVDTSMGFTPLAGVTMGTR SGDVDASLLPYLMTKLGLTDVQDMVDILNKKSGLLGLTNGLSSDMRDIQSNLDKPEVQTA YNIFIDRIRKYIGSYVTVMNGVDAIVFTAGIGENAVGVRKDIIDGMTWFGCEIDDDKNNV HGEEAVISTDDSKIKLLLVPTDEELMIARDVERLK >gi|307679039|gb|GL456758.1| GENE 88 90037 - 91008 988 323 aa, chain - ## HITS:1 COG:lin1617 KEGG:ns NR:ns ## COG: lin1617 COG0827 # Protein_GI_number: 16800685 # Func_class: L Replication, recombination and repair # Function: Adenine-specific DNA methylase # Organism: Listeria innocua # 7 317 19 327 332 240 43.0 3e-63 MEQAIQLLQQSLDTSFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYHTIKKIDL APEDVRRLSQLLLLKGTRKEQLQANHQLTPDGIGFLFVYLVEQLTNKSEPLKILDPASGM GNLLLTVLLNLETAGYKVSGYGVDIDETLLAVSSVNNAWSQANIQLFHQDGLQDLLLDPV DLALSDLPIGYYPNDERAKGFAAAAEEGHSYAHHLLMEQAMKYVKPAGFGLFLIPTNILE TEQSEFFKNWLTKNVYLQGMIQLPDELFKSEQSRKSILLVQNKGADAEQVKEVLLAKLAS LKDINKVTEFFKQFEAWKASNLK >gi|307679039|gb|GL456758.1| GENE 89 91173 - 91526 292 117 aa, chain - ## HITS:1 COG:no KEGG:EF1985 NR:ns ## KEGG: EF1985 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 117 1 117 117 169 100.0 4e-41 MRQKYSGNLLFTAMAIVYLMSFLALQLLEERQLTQKFTQATQEYYAGKSIFHLFLADVKQ NRRKLKTEERLVYAQVTLDYTYKNEQLRITVLLNKSGRKYQYQERVSHQKKAETILE >gi|307679039|gb|GL456758.1| GENE 90 91526 - 91960 412 144 aa, chain - ## HITS:1 COG:lin1379 KEGG:ns NR:ns ## COG: lin1379 COG4940 # Protein_GI_number: 16800447 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Competence protein ComGF # Organism: Listeria innocua # 4 140 14 148 154 61 28.0 7e-10 MVNKKYAGFTMLECLVALVVLSCMCQLFQLMIQQSFIGNQYLKNNDSKSWHIFLIQLEKE CQKLVFQTGSAQEISFLDSETNKTISIQIKEDKIIKRVNGKGYQPLLIGIKNGQFKNEGQ SFTLEVTFTSGKTFDSFFPIKGEF >gi|307679039|gb|GL456758.1| GENE 91 91950 - 92351 255 133 aa, chain - ## HITS:1 COG:no KEGG:EF1987 NR:ns ## KEGG: EF1987 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 133 23 155 155 228 98.0 5e-59 MTKQLFNAYCMMFLFLKLLRNFRWGVANIRRKLTIYSGFILLESLVSFSIVCVIAGIFSL TITQLIQQNYQREQELTRTRLGYEAILFLEQTGDLRFKERIYQGETYRFSLMENDGRRIL KVTDSRGAILIGQ >gi|307679039|gb|GL456758.1| GENE 92 92654 - 92779 153 41 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKIIKHFMKPVEIFETLDDDIGMFLIISICTALIFTFFSK >gi|307679039|gb|GL456758.1| GENE 93 93076 - 94017 556 313 aa, chain - ## HITS:1 COG:STM0489 KEGG:ns NR:ns ## COG: STM0489 COG0276 # Protein_GI_number: 16763869 # Func_class: H Coenzyme transport and metabolism # Function: Protoheme ferro-lyase (ferrochelatase) # Organism: Salmonella typhimurium LT2 # 3 302 5 307 320 272 43.0 6e-73 MKRTGILLVNLGTPKDSSKTEVRKYLKTFLSDRRVIKIHPIIWKPILNGIILNIRPKKSA KLYQKICTENGFPLLEYTEKQMENLKNICPEVEVTIGMSYSEPSIETALDTLLSKEIEEL NVIPMYPQYSGTTVGSVFDSVMNYFIKSDRIVDIKFIRSFYNNPQYIGYFSKKINEALNE SPIDAIVFSYHGIPMSYVKDGDNYPEECTKTTKLIMDKLGDIPYYQTYQSKFGPSEWLKP ATDDTLKKLPSKGIKNILIVAPGFVVDCLETIEELEHENRNYFLENGGEFYKYVHPFNGD IEFAKLVKDIISL >gi|307679039|gb|GL456758.1| GENE 94 94754 - 94978 173 74 aa, chain - ## HITS:1 COG:no KEGG:EF1990 NR:ns ## KEGG: EF1990 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 73 1 73 73 117 100.0 1e-25 MGFGKWKEIIPSDKSKQFEEGQKVSFIYRKEIRSGIIAVLLINSAVINIIDSSKPKNKKE KTVISYEKLLSMYQ >gi|307679039|gb|GL456758.1| GENE 95 95077 - 95277 324 66 aa, chain - ## HITS:1 COG:L117090 KEGG:ns NR:ns ## COG: L117090 COG1278 # Protein_GI_number: 15672511 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Lactococcus lactis # 1 66 1 66 66 95 80.0 2e-20 MNNGTVKWFNSDKGFGFITGEDGNDVFAHFSAIQADGFKSLEEGQAVTFDIEEGQRGMQA VNIFKA >gi|307679039|gb|GL456758.1| GENE 96 96114 - 97352 1550 412 aa, chain - ## HITS:1 COG:SPy1006 KEGG:ns NR:ns ## COG: SPy1006 COG3757 # Protein_GI_number: 15675010 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Streptococcus pyogenes M1 GAS # 96 212 219 342 444 81 38.0 3e-15 MKKIVTLIIVALVAVTPLNVFAAKGDQGVDWAIYQGEQGRFGYAHDKFTIAQIGGYNASG IYEQYTYKSQVASAIAQGKRAHTYVWWQNVLTYENAKQVLDYFLPKVQTPKGSIVALDAE DGVQSTDVTLWALDYIKEAGYTPMLYGYKGYLTSSYDLSRIAKKYQLWMAEYPDYEVTPY PNYNYFPSFENIGIFQFTSTYVAGGLDGNVDLTGITDNGYTKNNQPATNTPAIEEGKEVE NTPSSDVKVGDTVKVKFSVDAWATGEAIPQWVKGNSYKVQEVTESRVLLEGILSWISKGN IELLPDAATVPDKQPEATHVVQYGETLSSIAYQYGTNYQRLAALNGLTNPNLIYPGQILK VNGSVVSNIYTVQYGDNLSSIAAKLGTTYQTLAALNGLANPNLIYSGQTLSY >gi|307679039|gb|GL456758.1| GENE 97 97365 - 97766 273 133 aa, chain - ## HITS:1 COG:no KEGG:SEQ_0188 NR:ns ## KEGG: SEQ_0188 # Name: not_defined # Def: phage holin # Organism: S.equi_equi # Pathway: not_defined # 10 132 1 123 123 122 53.0 6e-27 MESREVGLAVFDFLERFVVDQEHKAVYVLMLICIAMTIDFISGTIAAKINPEIEFKSKIG INGILRKVASIVLLLFFIPLAPLVPGGAGVGLLYVLYVGYLMMEIKSIFENYQKMGVVTE LFEDFIKNLKNKK >gi|307679039|gb|GL456758.1| GENE 98 97756 - 97878 158 40 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229549668|ref|ZP_04438393.1| ## NR: gi|229549668|ref|ZP_04438393.1| conserved bactriophage protein [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] conserved bactriophage protein [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] phage uncharacterized protein, XkdX family [Enterococcus faecalis TX0312] # 1 40 1 40 40 72 100.0 1e-11 MYSFDDIKMMYDWGCFTDEQVMEFVPLCITEKEAKEIVGK >gi|307679039|gb|GL456758.1| GENE 99 97878 - 98252 436 124 aa, chain - ## HITS:1 COG:no KEGG:EF2806 NR:ns ## KEGG: EF2806 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 124 1 124 124 166 83.0 2e-40 MKTIYKVLYPVGYEPQEVSDTYNVALPYVEEKPLEGLANEQSQFFNFSERKWEEAVTQDY SKKLNLLENLSAVLEADNATLKQANEKLTAKAESLAQINSKTMLTSLQNTKEIDAIKEQI GGAK >gi|307679039|gb|GL456758.1| GENE 100 98269 - 98781 577 170 aa, chain - ## HITS:1 COG:no KEGG:EF2807 NR:ns ## KEGG: EF2807 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 4 57 3 56 183 86 81.0 4e-16 MTTDIVQLKENGTVKYMKTHADAIDGIEGKLVKAVGNETILGTKDFQDGCLSKGNAVLTQ NGLKYKSFTPTDLDSLQGGSVTFERYGDIVTVQFTIQTRIDKDFAKDQTIVWGIPAEFQP NTDKLFPLINSVGSGGIVKFVSGVRISAQTTIAKNTWYWGTITYIAKNRL >gi|307679039|gb|GL456758.1| GENE 101 98781 - 99068 472 95 aa, chain - ## HITS:1 COG:no KEGG:MPTP_1473 NR:ns ## KEGG: MPTP_1473 # Name: not_defined # Def: hypothetical protein # Organism: M.plutonius # Pathway: not_defined # 1 95 1 80 80 85 54.0 9e-16 MTDIVKVKQGGTQVFPQTHWNAVEGKPEVLKGEKGDPGPQGPKGDKGDVGPQGPAGQNAT TTDVATSIKNGLMSKEDKTKLDGLPAITFEKVGEV >gi|307679039|gb|GL456758.1| GENE 102 99065 - 99661 788 198 aa, chain - ## HITS:1 COG:no KEGG:MPTP_1474 NR:ns ## KEGG: MPTP_1474 # Name: not_defined # Def: hypothetical protein # Organism: M.plutonius # Pathway: not_defined # 1 197 1 205 205 202 59.0 7e-51 MVKAKRMMETDENGVERQFYPITHASAVRGLEKIIAGQSKVLSVNGYTGAVIITKADLGL ENALTELPYATEETDGIITAEMFQRLSNGEGGVYILPIATADELGGIKVGQLLEITEDGT LSAVKQTDQNFTTELKSKLEELKGYTAGANISISEDGVISATGGGDGGGVNQQYVDQKVQ EAIDRIPDITFERVGEVE >gi|307679039|gb|GL456758.1| GENE 103 99654 - 100535 1013 293 aa, chain - ## HITS:1 COG:no KEGG:EF2810 NR:ns ## KEGG: EF2810 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 288 1 299 302 486 82.0 1e-136 MVKWQATLSTTEPYNYIGIQNVRQGNRNTEVLEAILVENAWPLDLTGCEVFFESVIDNKY PIQRSAKIVNAKKGIIQYTFDEYSMQSLHRQEAYFSIHKGDNLIGATQNFSYFVVNAASK TEGEMGSYWQSIEDLIADMNAFINENKGDFTDWMNARKEEFEAWRDAQKTDFTSWFESIK DILKTIDPGGTMLAELMDARVDIQGVRHNSISERLLADMEYLYQKLEKRLYTLEYGEISD LIILQDDAFSLNHETEIVGTVDYPAIDGALVIATVDDTKQNAYVFEKVGEISG >gi|307679039|gb|GL456758.1| GENE 104 100554 - 103346 2567 930 aa, chain - ## HITS:1 COG:L63739_1 KEGG:ns NR:ns ## COG: L63739_1 COG4926 # Protein_GI_number: 15673033 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Lactococcus lactis # 1 751 1 727 727 490 39.0 1e-138 MIPVIFKPGEKDFSTNGLGRLVDATRCEITEEANGKYELEMDYPAISRFSDYFENGYQIK AKPNDLEEYHIFEIKQTFKDTFTNSIVIYAQSRTYKLGNRQVRLVTVDNRNGAEAMKLIE QNMDEPCDIKLYSDINTASSTTFEARNVLNCIAGEQGSLLQYWGGEIKREPFKLSLLRRR GRDNVGTVRYGKDLKGLTIKFDWQSIVTKVLPFAELQSGADGTSQRIYGNAVKSEYISKY PDVYAQYIQFTEDQGVKDIASLNKVASKYFTTLYPGSDKPKVSIELEIEKLTDSEEAKEF AKMRNYNLFDTFTVYHKLYDIDIQTKVTGIVYDALAEKTIKITAGDIQVAFYKQQSQDFQ EAIKTLTKKEYMSDFVDYITNLINGVEGGSILQYPKNRPNTHYYLDTESTDTAKDVIAIN NKGIGFSRTGWKGPFKNAWGINGVLNADFIGAGKIKSNIFETSFNSCGDILRMVNGTLQA WNNKKKIMELTKKGMEFWNGNSHVGTMGTKGNPFPGLADKNGNPVVSDGNSLLLVADNPQ KIIGLSNQSGTGHLITGPTQFFVGNNFNFFGPNGSKAILTVDRLIVGGKEVIPGQNGGGG SGAGTGGYPSEVTSDADKFAWDLWSYLLANGYSKAAAAGILGNVQGEVGPSMNPDTEQIG GPAYGWVQWDGSAYPLVGAPTWNGREYVQRLIAAAGIKQDYRTSLAQAQLINWCMFNGQW LGQVSPLTVDEFKVVSSPKTAAYAFELNFERPAAAHPERQTYAQVWYDKFKDLKASTATG KAGIEHLETLMGKWLGNGQCYAVPAEYSGFMGGCGLGAGTIYGFSHVIGDTSSAADIGEA YDWNAVGWRVIQNPTYQDLVVGAIVNIRRGGQWGTGWTVDPTYGHTGVIYGLNNGRIQTI EQNAEQGQIVAKYDRLYFANSIQSIVIPPK >gi|307679039|gb|GL456758.1| GENE 105 103343 - 104098 481 251 aa, chain - ## HITS:1 COG:L63101 KEGG:ns NR:ns ## COG: L63101 COG4722 # Protein_GI_number: 15673032 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Lactococcus lactis # 13 251 4 249 249 156 37.0 3e-38 MQRGVLLVEFKRGQFFLNGKHSSEFNVFMRERPERLSAGRVVELRERMGNDSIAVDFAYY KNVERTITCYAKANTLQEVSFLEDEISFWLDMGNYSDFIVYFDEHYIYQAIVTSPPKFTG TRKSGVLIPFEFTVSIRPFKKNRIGQYWISNPNQLINTEKYPSEPIIQILGSGDISFFIN NQSYSLKAINGDIIIDSEKQEAYRKSGGAFEILDHKTLFKDYPILKCGENNFRWTGKVTE FKVQPNWRRKV >gi|307679039|gb|GL456758.1| GENE 106 104067 - 106991 2775 974 aa, chain - ## HITS:1 COG:BH0960 KEGG:ns NR:ns ## COG: BH0960 COG5412 # Protein_GI_number: 15613523 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Bacillus halodurans # 379 890 95 494 584 94 23.0 1e-18 MNNEDLVLKMILDESGFSQGLNSAVKKLQGFDVEVDRTGQKGGRSLGSIWTSFVGNFLAS GATKIISKGIGLITSNIDGAINRVDTLNNANRVFENMGFSAGETSKTMDSLKKSIQGLPT PLDSAIKGVQLIASSTNDLGKSEQIFAALNNGILGFGGSAEMVENAIIQLSQSFSNGKVD AQTWNSMINSGLGPALNALAKQMGLTAGQMKEGLSDGSISVEEFQDALIKLNKEGGGGLK SLEQIAKDSTAGIKTGLANMKTAIVRGVANVVTKIDEGLKSAGFGSISEIIADKGAKMEA ALSKFAEMIPPMIKTAKTLYDTLKPYAPLLAGLAGSIGTLMLVNKVNAAFKAWREGTEAL SIAQAILNKTMLSNPFVAILTAVVGLVTAFIYLWKTNEGFRDAVKNIWKNIQEVISSAAD VVVKAWNSTMEFFSNMWDGTKEAFSNAGTWMKEAPGNAADWVKNKWNGTKEFFSGLWNST KEGSKNTWENIKQSAADSAKSVGESFKNGFDNVKDWFKGVGKSISDVFTTAFDFVWKYIG PYVTGIKNAFKMVVNAMKANIENVKMIAENVVTILKNVLLAPILFITSMITGGWEEAKEN MIAVWDNIAEAAQTIWFGIKNIFYNTVTAISYSVTSIFNGLMLTIKKIWIDVKLFFTLLW IDIKYGAINVWIEIKYSIIETWINIKFEAIRIWESLKTWFFETVENIKNGVIDGWNSLKQ GTVDTFNATVQWSKDTWNNFKQWIVDLVTGIKDGIINGWENLKQGTVNIFNNLVQGAKNA WNNLKRSVSDTVENVKQTFNDMRHIDLFEIGKNIIQGLVNGIGSMIGAVNKKIKEVAGNI KEKIKGALGIHSPSRWMRDMIGKNIVLGVVAGIDQEKGTLDKSVKKMTDLPTELPNFSTT GRYINQQGAQTESLAKNKGNATTNIGGDTFNINIQAMGNLNEKQLMDMAKDLVKYIQIVK NRDSDATGGAFGGI >gi|307679039|gb|GL456758.1| GENE 107 107212 - 107562 522 116 aa, chain - ## HITS:1 COG:no KEGG:EF2004 NR:ns ## KEGG: EF2004 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 116 1 116 116 204 100.0 7e-52 MASKFQQKIKLMIKDGSKYTTKQFTSAEFLPGSVMDTGTDLQIRLEEATKTNDMEAIRPI LRECYDFIADVIFEKQFTGQEYIDGMDARELLKITAQLLGSVTSGYDAIYSEQKKK >gi|307679039|gb|GL456758.1| GENE 108 107615 - 108463 1016 282 aa, chain - ## HITS:1 COG:YPO2116 KEGG:ns NR:ns ## COG: YPO2116 COG5492 # Protein_GI_number: 16122351 # Func_class: N Cell motility # Function: Bacterial surface proteins containing Ig-like domains # Organism: Yersinia pestis # 198 279 224 305 306 63 46.0 4e-10 MAKMKNVSVISVEKPTWFPLKYETGAFPVYGTPITIGTAVSIKPDVTTETTPDYGDSVVQ DQYVAFGGAEVTLETNGYQNEVLAEITGGKKLKGGVLRSADDIASDGAFAYRRRKSNGKY RYTIFYKGKFALTSDETSTLEGSSVSYTHPEWTGSFVDVPGLGYMYSVDEDDEGVDLEMI KNWFTEVMDPRKENTTAVTGVTLDQTELNLKVGQTATLTPTITPDNASNKKYQFRSESEA IGTVTPIQGKVTAVGEGTTEIVVTTEDGNFTAKCTLNVTTAD >gi|307679039|gb|GL456758.1| GENE 109 108464 - 108838 236 124 aa, chain - ## HITS:1 COG:no KEGG:EF2006 NR:ns ## KEGG: EF2006 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 124 1 124 124 220 95.0 1e-56 MYDKILKMLTDTIKQFSNAPIYLDDVMQSSEPFYFVLSLEESLTDNVGQNVQNKAYNVDI ALVDSKKDKQLVTSLTESCGAFFNVLNLDGNELFPEDYQTFKTDGIQHINFNVAFPQLIE WSEK >gi|307679039|gb|GL456758.1| GENE 110 108841 - 109239 379 132 aa, chain - ## HITS:1 COG:no KEGG:EF2007 NR:ns ## KEGG: EF2007 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 132 1 132 132 227 100.0 1e-58 MSKSDLRMKSNADKVIANLKKMTPIAEKEGAAMVNDSLAKIYQLIVPMTPIKSGDLRRGY RIIKARKLSSGRIVGALINNEKYFRYVNDGHRTKNGGFVKGRFMLQKSNKLANATYIPKR FKQMAIIIVKKG >gi|307679039|gb|GL456758.1| GENE 111 109232 - 109600 629 122 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229545408|ref|ZP_04434133.1| ribosomal protein L23 [Enterococcus faecalis TX1332] # 1 122 1 122 122 246 99 3e-64 MNEAEILAATYFDTCVIERMSDIENTESGITEQVYFPIHVGKLPCAFSQGSMGNLPVIEN KEAFNISYEEQKLFLEPNIKVKKGDRITITQGTGQKHVLFSKKPFYYPSHIEVVLSGSSI DE >gi|307679039|gb|GL456758.1| GENE 112 109597 - 109941 239 114 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229545407|ref|ZP_04434132.1| ## NR: gi|229545407|ref|ZP_04434132.1| hypothetical protein HMPREF0349_0624 [Enterococcus faecalis TX1322] hypothetical protein HMPREF0345_1866 [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis CH188] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9514_01563 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9521_01572 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9509_02951 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9512_00565 [Enterococcus faecalis TX0635] hypothetical protein HMPREF0345_1866 [Enterococcus faecalis ATCC 29200] hypothetical protein HMPREF0349_0624 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis CH188] hypothetical protein [Enterococcus sp. 7L76] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_02951 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9521_01572 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9514_01563 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9512_00565 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9496_02457 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9497_00013 [Enterococcus faecalis TX4244] hypothetical protein HMPREF9508_00392 [Enterococcus faecalis TX0312] hypothetical protein HMPREF9517_01915 [Enterococcus faecalis TX1341] hypothetical protein HMPREF9511_03130 [Enterococcus faecalis TX0630] hypothetical protein EF62_2371 [Enterococcus faecalis 62] conserved domain protein [Enterococcus faecalis TX1467] # 1 114 1 114 114 193 100.0 4e-48 MVDEKKEEIVEKIQLMLPNASEDRILSVLNLVIFEINSYNTCKIDIAWDEFEQLIIEVIY KALKNEIDKSVASVKRGDTSISYVVESKDIQSLMKNYSSAIKRILGCDSGVFFY >gi|307679039|gb|GL456758.1| GENE 113 109955 - 110137 417 60 aa, chain - ## HITS:1 COG:no KEGG:EF2010 NR:ns ## KEGG: EF2010 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 60 1 60 60 91 98.0 9e-18 MATAKKEVTYRVLDKKNFVGFMHPKTKKFITANENNEFVVSEDDKEAIEILERAADTFKV >gi|307679039|gb|GL456758.1| GENE 114 110166 - 111053 1077 295 aa, chain - ## HITS:1 COG:no KEGG:EF2011 NR:ns ## KEGG: EF2011 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 295 1 295 295 548 99.0 1e-155 MKKSSLNNLEYLDISQEVNALQVPNTPFLSYLLGAGKVEAAKSTEIKWREYGMNNDDSSA QLEGGEYADAESDRTWFNNYTEIFRKSTSVSGTLDAINVDGVGNELNSQVALRATEMKID LNRKLIVGVKADESGSKGRQMNGILNLISSTNKVETAAAGAVTRKDIDALFKTMFQKGYM GEKLCLVAPDMQELMTDQLDEKSTKIVQFGDKLTFGLQLGNIVSNYGSGIALIEPNLPNG TIAAIDTNYVKLRPLREWRAEELAKTTDSRRIGLVGEYSIEYKASNSGAILNLKA >gi|307679039|gb|GL456758.1| GENE 115 111067 - 111690 725 207 aa, chain - ## HITS:1 COG:no KEGG:EF2012 NR:ns ## KEGG: EF2012 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 207 1 207 207 298 96.0 1e-79 MKPNLLPMDLQMFAEGEGATDFTFDDFKAFVESNEEAQKFVQSQSQSAADKQLEAWKQNN LEKIKETTIKEYEESKKNKTPEQIKLEELQAEFEAEKALRVTSDNKAFVAEKIAGLDWDG DLKDSISQFMLNNLVSSDTEFTKKAVEGFTELLEAINDKHAEAIKNVEMTKAFGNKSQQT NMVTGNQTKSFENPEAALGQKLQAFID >gi|307679039|gb|GL456758.1| GENE 116 111820 - 111903 87 27 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDPYDYLDADYEEHLLREEKQLKSDES >gi|307679039|gb|GL456758.1| GENE 117 111908 - 112252 317 114 aa, chain - ## HITS:1 COG:no KEGG:EF2013 NR:ns ## KEGG: EF2013 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 9 114 1 106 106 196 94.0 3e-49 MLKFGGEVMKGLFEAVLNLEVTNGTEKAYKKVFEQENERYLTKHTLRDGNGNIVKDGLES VWSGNYCHVDILYSIPGRKSKLTISIVSRTLQNVKDAVTDYQMLGAELVHKNWK >gi|307679039|gb|GL456758.1| GENE 118 112293 - 112502 139 69 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229545402|ref|ZP_04434127.1| ## NR: gi|229545402|ref|ZP_04434127.1| hypothetical protein HMPREF0349_0619 [Enterococcus faecalis TX1322] hypothetical protein HMPREF0345_1861 [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis HIP11704] conserved domain protein [Enterococcus faecalis TX0855] conserved domain protein [Enterococcus faecalis TX0411] hypothetical protein HMPREF0345_1861 [Enterococcus faecalis ATCC 29200] hypothetical protein HMPREF0349_0619 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis HIP11704] hypothetical protein [Enterococcus sp. 7L76] conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX0855] conserved domain protein [Enterococcus faecalis TX4000] conserved domain protein [Enterococcus faecalis TX0312] # 1 69 5 73 73 111 100.0 1e-23 MQHLEFSFGSLNGDYSEQTLENFEYMFNRLEEDNLGYVHFDNVSEFYFNGITNEDKRVLK ETIIANSKK >gi|307679039|gb|GL456758.1| GENE 119 112511 - 114268 1322 585 aa, chain - ## HITS:1 COG:no KEGG:EF2015 NR:ns ## KEGG: EF2015 # Name: not_defined # Def: minor head protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 347 1 347 634 648 93.0 0 MTKKKTTASERYWEKRRGLEDKARLKLEKKTLNELESVFERALVKIQRQLLSQADLHDIT QSEMLEDFSKRDQEKYRKYIEKNYEKLMESDEAYKQFIDEYFPSFDYAKVNRLLQLRADI FSTLAGEAISSDVNGKFNNDLENITKRIYNSNSNTLMQLLGGSAPGLSKKELENILNYPW SGKTFSSRLWGNISSLEQRLSNSIINSLASGEGVLEALRTMKNDGVVSGMFKLEQGKFNR SIENLVRTEYSHFAVEGVRKSLKDVGIKQTQSWSAEDERVCSICGRRHGKEIKDDWHPPY HGRCRCTEIPMVPEISDDIDKLYEEMFGDLLDEFASKQWGIKLNHPKSTTIANRFSLSKL TEENIGDTERINDIINRTKDVISNYKNETGIDVIKLFEDKKFADKNNPYTDEKSKFIRYL LKNNGFDGLPQKVTDVDDLIPVYRGIVDFKYGDDTSQDQIDRFLRSHFDISGARSSANGR GSYFTSAKFKAQEYANNGNNGQLITAYLLEKINLLDDSIFLKEREAFRKIADNFGEDAKY YAFLLSKNFLMDTQKDIYALISGYDGIQKGAIYNILNRTMLGVKK >gi|307679039|gb|GL456758.1| GENE 120 114243 - 115730 1143 495 aa, chain - ## HITS:1 COG:no KEGG:EF2016 NR:ns ## KEGG: EF2016 # Name: not_defined # Def: portal protein # Organism: E.faecalis # Pathway: not_defined # 1 494 1 489 490 840 90.0 0 MFQNNLSLKRYKRVRTKYSTQINEEVFDPNDFITEMKPFFDDRERKYKAYTSEQNEIDRR PKPNTEIIKVNNKLHAGLYNTIIDQAADHFTGIPIKWDYDITEQRKSILQKMGSKVKDLF SGNVRNETKTPEEFDRLTELVNDMRFAMLDSDTARFQGACGVAFRLLEPVETVEGWQLWA SNIEPWKAEKYENADIFIREKYDTHQKKFFEEMKVITKKRICIYSRYVESNLVSASGTFK LIEEVENPLETFYLSEFKNNTNRYCDFEVAEELSDAFDRSLSDQQNEVEQFKLAYMAISG SRLDEKEAQRMMEQLGIINLPDPQAKVGYVTKDINKDFNEYHLDKLKKLYYTVTKSIDFN DEVFKSNSSGEARKWQIIALEAKTNTKEQYFKEGLKEAAETMSAFIKFRDKLDVDVSKIV FTFSRSLPTDIGYLADALPKLSPFVSKRTIINQIPFVKDPDYEMDLMNLEQGQDYPSGEY DELGGAGNDEEENNG >gi|307679039|gb|GL456758.1| GENE 121 115742 - 116425 523 227 aa, chain - ## HITS:1 COG:SPy0972 KEGG:ns NR:ns ## COG: SPy0972 COG1783 # Protein_GI_number: 15674984 # Func_class: R General function prediction only # Function: Phage terminase large subunit # Organism: Streptococcus pyogenes M1 GAS # 24 221 222 415 429 68 28.0 1e-11 STYKDNPFIAQAFIEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCITDEMAA NFDNIRNGLDFGYATDPLAFVRWHYDKKKNGIYAIDEIYGVKISNREFANKAKSKGYISD RIAADSAEPKSIAELNSEHGMPRVFGVKKGPDSVEYGEEWLGDLDFICIDPLRTPNIAKE FENIDYQTDKDGNPKPRLEDKDNHTIDATRYAFSEDMDKNNVRFIQY Prediction of potential genes in microbial genomes Time: Tue Jul 5 18:20:54 2011 Seq name: gi|307679038|gb|GL456759.1| Enterococcus faecalis TX0312 genomic scaffold Scfld18, whole genome shotgun sequence Length of sequence - 27587 bp Number of predicted genes - 35, with homology - 35 Number of transcription units - 17, operones - 7 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 40 - 768 617 ## COG2188 Transcriptional regulators - Prom 882 - 941 7.3 + Prom 841 - 900 7.2 2 2 Op 1 . + CDS 945 - 1871 834 ## SPN23F_18240 hypothetical protein 3 2 Op 2 . + CDS 1888 - 3171 1008 ## COG1455 Phosphotransferase system cellobiose-specific component IIC + Term 3221 - 3271 6.3 4 3 Op 1 . + CDS 3560 - 4456 851 ## COG1192 ATPases involved in chromosome partitioning + Term 4459 - 4493 1.1 5 3 Op 2 . + CDS 4533 - 4742 227 ## SSUBM407_p002 omega protein 6 3 Op 3 . + CDS 4759 - 5031 450 ## SSUBM407_p003 epsilon-antitoxin 7 3 Op 4 . + CDS 5033 - 5341 276 ## SSUBM407_p004 toxin of epsilon-zeta postsegregational killing system + Term 5365 - 5399 5.3 8 4 Op 1 1/1.000 - CDS 5894 - 6394 337 ## COG1011 Predicted hydrolase (HAD superfamily) 9 4 Op 2 . - CDS 6399 - 7166 598 ## COG1349 Transcriptional regulators of sugar metabolism + Prom 7503 - 7562 8.8 10 5 Op 1 4/0.000 + CDS 7654 - 8079 708 ## COG0698 Ribose 5-phosphate isomerase RpiB 11 5 Op 2 3/0.000 + CDS 8096 - 8611 528 ## COG0698 Ribose 5-phosphate isomerase RpiB 12 5 Op 3 3/0.000 + CDS 8622 - 9554 940 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 13 5 Op 4 2/0.000 + CDS 9557 - 10537 979 ## COG3684 Tagatose-1,6-bisphosphate aldolase 14 5 Op 5 13/0.000 + CDS 10565 - 10882 413 ## COG1447 Phosphotransferase system cellobiose-specific component IIA 15 5 Op 6 8/0.000 + CDS 10882 - 12588 1478 ## COG1455 Phosphotransferase system cellobiose-specific component IIC + Prom 12592 - 12651 3.3 16 5 Op 7 . + CDS 12735 - 14141 1444 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 17 5 Op 8 . + CDS 14164 - 14436 168 ## SUB0801 hypothetical protein 18 5 Op 9 . + CDS 14457 - 15356 482 ## COG2017 Galactose mutarotase and related enzymes + Term 15367 - 15406 3.1 + Prom 15582 - 15641 6.5 19 6 Tu 1 . + CDS 15793 - 16401 452 ## SSUBM407_p004 toxin of epsilon-zeta postsegregational killing system 20 7 Op 1 . - CDS 16349 - 16618 265 ## pWCFS103_42 putative resolvase 21 7 Op 2 . - CDS 16615 - 16935 326 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs - Prom 16959 - 17018 7.3 + Prom 16952 - 17011 9.6 22 8 Tu 1 . + CDS 17118 - 17591 185 ## COG4644 Transposase and inactivated derivatives, TnpA family + Prom 17636 - 17695 2.4 23 9 Op 1 . + CDS 17733 - 18830 677 ## pWCFS103_43 putative transposase 24 9 Op 2 . + CDS 18728 - 20089 825 ## COG4644 Transposase and inactivated derivatives, TnpA family + Term 20168 - 20227 7.3 + Prom 20330 - 20389 9.2 25 10 Tu 1 . + CDS 20553 - 21527 838 ## COG3049 Penicillin V acylase and related amidases + Term 21736 - 21788 6.0 + Prom 21820 - 21879 6.7 26 11 Tu 1 . + CDS 21972 - 22277 273 ## gi|229546353|ref|ZP_04435078.1| hypothetical protein HMPREF0349_1570 + Prom 22332 - 22391 4.3 27 12 Tu 1 . + CDS 22484 - 22798 400 ## gi|227554708|ref|ZP_03984755.1| hypothetical protein HMPREF0346_1871 + Term 22894 - 22934 0.2 + Prom 23278 - 23337 11.0 28 13 Tu 1 . + CDS 23393 - 23635 132 ## gi|229546356|ref|ZP_04435081.1| hypothetical protein HMPREF0349_1573 + Term 23646 - 23696 9.1 + Prom 23774 - 23833 8.9 29 14 Tu 1 . + CDS 24017 - 24883 456 ## Dred_0847 hypothetical protein + Term 24920 - 24961 4.3 + Prom 24918 - 24977 6.4 30 15 Op 1 . + CDS 25021 - 25617 526 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs 31 15 Op 2 . + CDS 25634 - 25921 295 ## EFA0074 hypothetical protein 32 15 Op 3 . + CDS 25915 - 26139 252 ## EF_C0011 UvrC family transcriptional regulator 33 15 Op 4 . + CDS 26199 - 26408 167 ## EFA0075 hypothetical protein + Prom 26632 - 26691 10.8 34 16 Tu 1 . + CDS 26750 - 27022 113 ## gi|229548470|ref|ZP_04437195.1| hypothetical protein HMPREF0345_0681 - Term 26986 - 27047 20.3 35 17 Tu 1 . - CDS 27055 - 27492 362 ## gi|229546363|ref|ZP_04435088.1| hypothetical protein HMPREF0349_1580 - Prom 27527 - 27586 8.4 Predicted protein(s) >gi|307679038|gb|GL456759.1| GENE 1 40 - 768 617 242 aa, chain - ## HITS:1 COG:SPy0715 KEGG:ns NR:ns ## COG: SPy0715 COG2188 # Protein_GI_number: 15674773 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 9 220 6 218 240 85 31.0 6e-17 MLDNTNKLPLYVQLVNTLLEQIQNDMSPNDKLPTEKEICEEYSVSRTTVRLTMNELENRG YIYRIQGKGSFVSSIKKNTINSFFDLDFRAHYEGMNSEELTSELIFFKKEAAQLSLRQKM GLQQEHNIIKIQVLRKLLDIPVALETIILKNQYFNFINEAKLKEEGVDKLINTIDIPLKI VEEKYKARRLNPDEIDLLQSKDEAALVVTKSLYNTNNELIIISERKILTSKLSYQNFIQK EN >gi|307679038|gb|GL456759.1| GENE 2 945 - 1871 834 308 aa, chain + ## HITS:1 COG:no KEGG:SPN23F_18240 NR:ns ## KEGG: SPN23F_18240 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_ATCC700669 # Pathway: not_defined # 4 305 2 295 298 290 50.0 5e-77 MNQKRLLDFSASDFLSVRPMELKQAILASEGRTVMAENVASSSNFLAGVTNAELERAAGA DLILFNALDLFDPQIVGIPDNIEESPVEWIKKAIGRPIGVNLEPVDIKASMNEARSEISI GRIVSPKTLKQANKLGFNFICLTGNPGTGVTNDAIKHAIELSREHFDGLIIAGKMHGAGV DEPVMNLEIAKQFVETGIDMLLVPAPYTVPYFMEQDLKEIADYVRSHNKGKSIEDKVLLL TANGTSQDSSDSDTIKKIALASKACGADIQHIGDSLNGICLPENIFALGQAIRGYRHQMV MLGKSNLR >gi|307679038|gb|GL456759.1| GENE 3 1888 - 3171 1008 427 aa, chain + ## HITS:1 COG:BS_licC KEGG:ns NR:ns ## COG: BS_licC COG1455 # Protein_GI_number: 16080909 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Bacillus subtilis # 3 416 10 436 452 346 42.0 6e-95 MMDKVQVFAAKISNQRHLIALRDGMASVMPLIIIGSIFMLIGNFPVPAFTDWLDNIGLLQ FFNKASDSTFGMIGLGVTFSIAYNLAKRYKVDALSAGLIAISAFVILTPILQSEAGNGFP TKYLGSSGLFVGIIVSIVSTEMFQWFVKRNITIKMPDTVPPNVSRAFTAIVPGFFIILAW FFILIFLHYTGIDDIHALIANTIAKPLGLLTKTLPGIIFVIFVQCFFWMFGIHGAQVTGP IIEPLLLQNSDANRIAYQAGQELPNIITYEFLYNFVFTGGAGCVIALAILIFLFSKSKEN KTLGKLSIAPVSFQVAEPLLFGFPTILNFKMVIPFVTAPVVTTLITYYAMKFGIVSKPIG AVVPWTTPPIISGFLATGGKLSGALIQIVTIAVNMLIYYPFFKLDDNEKLKVERSLAERN TASSDLN >gi|307679038|gb|GL456759.1| GENE 4 3560 - 4456 851 298 aa, chain + ## HITS:1 COG:pli0069 KEGG:ns NR:ns ## COG: pli0069 COG1192 # Protein_GI_number: 18450351 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Listeria innocua # 30 298 13 288 293 127 31.0 3e-29 MIQYYYTKKEWGVVMEKEELKILEELRRILNSKNEAIVILNNYFKGGVGKSKLSTMFAYL TDKLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGNLTSSIIHLTDNLDLIP GTFDLMLLPKLTRSWTFENESRLLATLLAPLKSDYDLIIIDTVPTPSVYTNNAIVASDYV MIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIKSNLEELYKQH KEDNLVFQNIIKRSNKVSTWSKNGITEHKGYDKKVLSMYENVFFEMVERIIQLENKKE >gi|307679038|gb|GL456759.1| GENE 5 4533 - 4742 227 69 aa, chain + ## HITS:1 COG:no KEGG:SSUBM407_p002 NR:ns ## KEGG: SSUBM407_p002 # Name: not_defined # Def: omega protein # Organism: S.suis_BM407 # Pathway: not_defined # 1 69 3 71 71 112 95.0 4e-24 MGNLGAQKAKRNDTPISAKKDIMVDKTVRVRADLHHIIKIETAKNGGNVKEVMDQDLEEY IRKYLPDKL >gi|307679038|gb|GL456759.1| GENE 6 4759 - 5031 450 90 aa, chain + ## HITS:1 COG:no KEGG:SSUBM407_p003 NR:ns ## KEGG: SSUBM407_p003 # Name: not_defined # Def: epsilon-antitoxin # Organism: S.suis_BM407 # Pathway: not_defined # 1 90 1 90 90 112 78.0 4e-24 MAVTYEKTFEIEIINELSASVYNRVLNYVLNHELDTKNTRLLEVNLLNQLEVAQEVDLFQ QPFEELQAIHEYWRSMNQYSKQILTKEKVA >gi|307679038|gb|GL456759.1| GENE 7 5033 - 5341 276 102 aa, chain + ## HITS:1 COG:no KEGG:SSUBM407_p004 NR:ns ## KEGG: SSUBM407_p004 # Name: not_defined # Def: toxin of epsilon-zeta postsegregational killing system # Organism: S.suis_BM407 # Pathway: not_defined # 1 100 1 100 287 152 78.0 4e-36 MANITDFTEKQFEDRLEKNVERLTKNRLAVESPTAFLLGGQPGSGKTSLRSAISEETQGN VVIIDNDTFKQQHPNFDELVKLYEKDVVKHATSYSNQLVKLN >gi|307679038|gb|GL456759.1| GENE 8 5894 - 6394 337 166 aa, chain - ## HITS:1 COG:SPy0596 KEGG:ns NR:ns ## COG: SPy0596 COG1011 # Protein_GI_number: 15674680 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Streptococcus pyogenes M1 GAS # 6 151 5 152 300 129 41.0 3e-30 MTYKNIVFDLDDTLYDQQLPFKRSVEKCFPTIDIQQIDNIYKRFRYWSDVAFPKYTKKLI SIEQLRIFRCQKTMEEFGIDSISRTEALDFQADYELDQITMIPEIHQLLLALHKNRIPIG ILTNGPVDLQSRKLQNIGAYQYFEKQNIIISSPLTEELQKIAMKVM >gi|307679038|gb|GL456759.1| GENE 9 6399 - 7166 598 255 aa, chain - ## HITS:1 COG:SPy1924 KEGG:ns NR:ns ## COG: SPy1924 COG1349 # Protein_GI_number: 15675732 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Streptococcus pyogenes M1 GAS # 1 255 1 256 257 292 63.0 3e-79 MNKKRRLEKILDMLKIDGTITIKEIIDELDISDMTARRDLDALEADGLLTRIHGGAQLLS SKKPLEKTHIEKKSLNTKEKIDIAKKACSLIKDGDTIFIGPGTTLEQLALELKGRKGYKI RVITNSLPVFLILNDSETIDLLLLGGEYREITGAFVGSMASTNLKAMRFAKAFVSANAVT HNSIATYSDKEGVIQQLALNNAVEKFLLVDSTKFDRYDFFNFYNLDQLDTIITDNQISPQ HLEEFSQYTTILKAD >gi|307679038|gb|GL456759.1| GENE 10 7654 - 8079 708 141 aa, chain + ## HITS:1 COG:SP1193 KEGG:ns NR:ns ## COG: SP1193 COG0698 # Protein_GI_number: 15901058 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Streptococcus pneumoniae TIGR4 # 1 140 1 140 141 215 83.0 2e-56 MAIVVGADLKGTRLKDIVKNFLVEEGFEVIDVTKDGQDFVDVTLAVASEVNKDEQNLGIV IDAYGAGSFMVATKIKGMVAAEVSDERSAYMTRGHNNSRMITVGAEIVGDELAKNIAKGF VNGKYDGGRHQIRVDMLNKMC >gi|307679038|gb|GL456759.1| GENE 11 8096 - 8611 528 171 aa, chain + ## HITS:1 COG:SP1192 KEGG:ns NR:ns ## COG: SP1192 COG0698 # Protein_GI_number: 15901057 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Streptococcus pneumoniae TIGR4 # 1 171 1 171 171 311 88.0 3e-85 MRIAIGCDHIVTDEKMAVSEFLKSKGHEVLDFGTYDHARTHYPIYGKKVGEAVVSGQADL GVCICGTGVGINNAVNKVPGVRSALVRDMTSAIYAKEELNANVIGFGGMITGGLLMNDII EAFIEAEYKPTEENKKLIAKIEHVETHNAHQADEDFFTEFLERWDRGDYHD >gi|307679038|gb|GL456759.1| GENE 12 8622 - 9554 940 310 aa, chain + ## HITS:1 COG:SP1191 KEGG:ns NR:ns ## COG: SP1191 COG1105 # Protein_GI_number: 15901056 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Streptococcus pneumoniae TIGR4 # 1 310 1 309 309 399 67.0 1e-111 MILTVTLNPSVDISYPLETLKIDTVNRVKDVSKTAGGKGLNVTRVLYESGDKVTATGFLG GKIGEFIESELEQSPVSPAFYKISGNTRNCIAILHEGNQTEILEQGPTISHEEAEGFLDH YSNLIKQSEVVTISGSLPSRLPNDYYEKLIQLASDEGVAVVLDCSGAPLETVLKSSAKPT AIKPNNEELSQLLGKEVTKDIEELKDVLKESLFSGIEWIVVSLGRNGAFAKHGDVFYKVD IPDIPVVNPVGSGDSTVAGIASALNSKKSDADLLKHAMTLGMLNAQETMTGHVNMTNYET LNSQIGVKEV >gi|307679038|gb|GL456759.1| GENE 13 9557 - 10537 979 326 aa, chain + ## HITS:1 COG:SP1190 KEGG:ns NR:ns ## COG: SP1190 COG3684 # Protein_GI_number: 15901055 # Func_class: G Carbohydrate transport and metabolism # Function: Tagatose-1,6-bisphosphate aldolase # Organism: Streptococcus pneumoniae TIGR4 # 1 326 1 326 326 541 86.0 1e-154 MILTEQKRKSLEKISDKNGVISALAFDQRGALKRLMAQYQDTEPTVAQMEELKVLVAEEL TKYASSMLLDPEYGLPATKALDKEAGLLLAYEKTGYDTSSTKRLPDCLDVWSAKRIKEQG ADAVKFLLYYDVDSSDELNQQKQAYIERVGSECVAEDIPFFLEILAYDEEISDAGSVEYA KVKPRKVIEAMKVFSDPRFNIDVLKVEVPVNVKYVEGFADGEVVYSKAEAADFFKAQEEA TNLPYIYLSAGVSAKLFQETLQFAHDSGAKFNGVLCGRATWAGSVEPYIKEGEKAAREWL RTTGFENIDELNKVLVKTASPWTDKV >gi|307679038|gb|GL456759.1| GENE 14 10565 - 10882 413 105 aa, chain + ## HITS:1 COG:SP1186 KEGG:ns NR:ns ## COG: SP1186 COG1447 # Protein_GI_number: 15901051 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIA # Organism: Streptococcus pneumoniae TIGR4 # 1 105 1 105 105 154 82.0 6e-38 MNREEMTLLGFEIVAYAGDARSKLLEALKAAENGDFAKADSLVVEAGSCIAEAHNSQTAM LAREASGEELPYSVTMMHGQDHLMTTVLLKDVIHHLIELYKRGAK >gi|307679038|gb|GL456759.1| GENE 15 10882 - 12588 1478 568 aa, chain + ## HITS:1 COG:SPy1917 KEGG:ns NR:ns ## COG: SPy1917 COG1455 # Protein_GI_number: 15675726 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Streptococcus pyogenes M1 GAS # 1 568 1 564 565 903 82.0 0 MHKLIELIEKGKPFFEKISRNIYLRAIRDGFIAGMPVILFSSIFILIAYVPNAWGFHWSK DIETFLMTPYSYSMGILAFFVGGTTAKALTDSMNRDLPATNQINFLSTMLASMVGFLLMA AEPAKEGGFLTAFTGTKGLLTAFIAAFVTVNVYKVCVKNNVTIRMPEEVPPNISQVFKDL IPFTVSVVLLYGFELIVKGTLGVTVAESIGTLLAPLFSAADGYLGITLIFGAYAFFWFVG IHGPSIVEPAIAAITYANIDANLHLIQAGQHADKVITSGTQMFIVTMGGTGATLIVPFLF MWICKSERNRAIGRASVVPTFFGVNEPILFGAPIVLNPIFFVPFIFAPIVNVWIFKFFVD TLNMNSFSANLPWVTPGPLGIVLGTNFQVLSFILAGLLVVVDTIIYYPFVKVYDEQILEE ERSGKTNDALKEKVAANFNTTKADAVLGKAGVAKEDVAANNNITKETNVLVLCAGGGTSG LLANALNKAAAEYNVPVKAAAGGYGAHREMLPEFDLVILAPQVASNFDDMKAETDKLGIK LAKTEGAQYIKLTRDGQGALAFVQQQFD >gi|307679038|gb|GL456759.1| GENE 16 12735 - 14141 1444 468 aa, chain + ## HITS:1 COG:SP1184 KEGG:ns NR:ns ## COG: SP1184 COG2723 # Protein_GI_number: 15901049 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Streptococcus pneumoniae TIGR4 # 1 468 1 468 468 897 94.0 0 MTKTLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNYWYTAEPASDFYHKYPVDL ELAEKYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHNLFAECHKRHVEPFVTLHHFDTP EVLHSDGDFLNRENIEHFVDYAAFCFEEFPEVNYWTTFNEIGPIGDGQYLVGKFPPGIQY DLAKVFQSHHNMMVSHARAVKLYKDKGYKGEIGVVHALPTKYPYDPENPADVRAAELEDI IHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALEAAKDLNDFLGINYYM SDWMQAFDGETEIIHNGKGEKGSSKYQIKGVGRRIAPDYVPRTDWDWIIYPEGLYDQIMR VKNDYPNYKKIYITENGLGYKDEFVDNTVYDDGRIDYVKKHLEVLSDAIADGANVKGYFI WSLMDVFSWSNGYEKRYGLFYVDFDTQERYPKKSAHWYKKVAETQVIE >gi|307679038|gb|GL456759.1| GENE 17 14164 - 14436 168 90 aa, chain + ## HITS:1 COG:no KEGG:SUB0801 NR:ns ## KEGG: SUB0801 # Name: not_defined # Def: hypothetical protein # Organism: S.uberis # Pathway: not_defined # 5 90 4 90 92 82 47.0 4e-15 MLSDTLEKVQHLFRPNFEKVYIVSFEDCPMIPELEANPLLKCGKWYVSTGKEWICHSDLE LSAFEWEFLQSLDVEIRETIHFEVNYLPFQ >gi|307679038|gb|GL456759.1| GENE 18 14457 - 15356 482 299 aa, chain + ## HITS:1 COG:CAC3032 KEGG:ns NR:ns ## COG: CAC3032 COG2017 # Protein_GI_number: 15896283 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Clostridium acetobutylicum # 1 297 1 296 298 173 34.0 3e-43 MTIELKNEYLTVQFKTLGGQLTSIKDKDGIEYLWQADPNYWNGQAPILFPICGSLRNDWA IYRPQERLFFTGLIRRHGFVRKEEFILEEVNDNSVTFSIKPNAEMLDNYLYQFELRVVYT LNGKSIRTEFQVTNLEMEKTMPYFIGAHPAFNCPLVEGENYEDYYIEFSEVESCSIPKSF PETGLLDLQDRTPFLENQKILDLDYSLFSHDAITLDQLKSRSVTLRSRKSGKGLRVDFDD FPNLILWSTTNKSPFIALEPWSGLSTSLEEGNFLEDKRQVTKISPQETSRKIYDITILN >gi|307679038|gb|GL456759.1| GENE 19 15793 - 16401 452 202 aa, chain + ## HITS:1 COG:no KEGG:SSUBM407_p004 NR:ns ## KEGG: SSUBM407_p004 # Name: not_defined # Def: toxin of epsilon-zeta postsegregational killing system # Organism: S.suis_BM407 # Pathway: not_defined # 1 159 114 272 287 282 93.0 5e-75 MIEGTGRTTDVPIQTATMLESKGYETKMYVTAVPKIESYLGTIERYETMYADDPMTARAT PKQAHDIVVKNLPINLETLHKTGLFSDIRLYNREGVKLYSSLETPSISPKETLERKLNRK VSGKEIQPTLERIEQKMVQNQHQETPEFKAIQQKMESLQPPTPPIRGHWNIHTENSGRKP NNYWAIKLVVRFFCLAFSILVD >gi|307679038|gb|GL456759.1| GENE 20 16349 - 16618 265 89 aa, chain - ## HITS:1 COG:no KEGG:pWCFS103_42 NR:ns ## KEGG: pWCFS103_42 # Name: tnpR2 # Def: putative resolvase # Organism: L.plantarum # Pathway: not_defined # 1 87 107 193 195 114 78.0 1e-24 MMSVIAELERNLLADRVRKGIEASKKRGVAIGRPKIPQEKLDIAVRMYKSGDYSVKEIIE TNQISTGTFYREINRLKLRKLNKRTEQLT >gi|307679038|gb|GL456759.1| GENE 21 16615 - 16935 326 106 aa, chain - ## HITS:1 COG:XFa0019 KEGG:ns NR:ns ## COG: XFa0019 COG1961 # Protein_GI_number: 10956730 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Xylella fastidiosa 9a5c # 1 102 4 105 188 95 43.0 2e-20 MIIGYARVSKDDQNLGRQIDQLKNFGAEKIIQEKYTGTKRNRPGIEQLLQTIRKGDIVVV ESISRLGRNTLDILNLIQELDQKQIQFVSLKENMNTSTPTGRPCYK >gi|307679038|gb|GL456759.1| GENE 22 17118 - 17591 185 157 aa, chain + ## HITS:1 COG:YPCD1.90c KEGG:ns NR:ns ## COG: YPCD1.90c COG4644 # Protein_GI_number: 16082773 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, TnpA family # Organism: Yersinia pestis # 2 155 9 164 771 87 35.0 1e-17 MKKEKIFGTFVGAPSEEQLQLYFQLTDFDKEIINEMRLPSTKLGFAVQLGTVRFLGTFFT DFSKIPLEVIIYLANQLSIDPREFDSYSRKMTISQHAQLIKERYSYRNFQDSDCQKFLYD WLLSRASHTTETTEMLSDMLLKKCLEEKILLPGVSIF >gi|307679038|gb|GL456759.1| GENE 23 17733 - 18830 677 365 aa, chain + ## HITS:1 COG:no KEGG:pWCFS103_43 NR:ns ## KEGG: pWCFS103_43 # Name: tnpA # Def: putative transposase # Organism: L.plantarum # Pathway: not_defined # 1 327 210 536 997 359 55.0 9e-98 MDILRAPLIDEGRKEITRGFHRLKEFQQFHTSEWDFSTIPEGKVKHLATYAFKAKSSLIQ RMSIQKKLALLVAFVYEYEKIATDELLTALIKYYESIFRRAKNKESKERLRTLKDLDRAA FTLSEIVELLLDDSIEIDCLRSRVFDQYPAEDIVNAVFQVKKLVKNEQEPIAIAELIQSY RKIRKFIALIIETLTIENGHYDEDCMAVWCLIQRRIPKPITFRQFESVENHIPKKWAYYI HYNPNEVNQSMLILGIELLIQSLNKHDIFVPKSEKFIDPMSCLISKETWEQQKESLLSQL ELPSSSVEAIKQLEEDLSLSYNETVKNGPILKWLELKNRITKIKLSCLNSEKHVKIRKIS SSKIA >gi|307679038|gb|GL456759.1| GENE 24 18728 - 20089 825 453 aa, chain + ## HITS:1 COG:YPCD1.90c KEGG:ns NR:ns ## COG: YPCD1.90c COG4644 # Protein_GI_number: 16082773 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, TnpA family # Organism: Yersinia pestis # 13 451 324 762 771 419 45.0 1e-117 MARIEKQDNKDKIIVSKLRKTRENKEDKQFKNRVKALMPKIDLPDLLLEVNQQLDLTSCF HHINESNTRMDHLDISVLAVLLAEACNIGFSPVSKEGIESLKYDRLMYVNHQYVRLDTLS ATNKKIISAYKKLPISLVWGNNQMASADGIRYTTPQRSLYSRSNPKYFGRSRGVTFYIFV SDQYIGFHGMVVPGTLRDSLYLLDGFLNQTSGLEPKQIMTDTTGYSDLVFGLFGLLGFQF SPRIANNHGTKLWRIDLTADYKMLNEVSQNKINTTRIEKNWDEILRVAGSLKSGKVNATE LTKALQRNGQPTELGKTIIEYGKVYKTKHQLRYISDEIYARQILEQLNKGEARHTLCRHI FYGKKGKLYQTYIDGMEEQLTALSIVTNAIIYWNTLYLERVIDQMRVEGFDCSEEKINKL SPLLVEHINFVGKYSFRYDPSLKNGHLRPLNTQ >gi|307679038|gb|GL456759.1| GENE 25 20553 - 21527 838 324 aa, chain + ## HITS:1 COG:BS_yxeI KEGG:ns NR:ns ## COG: BS_yxeI COG3049 # Protein_GI_number: 16081005 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Penicillin V acylase and related amidases # Organism: Bacillus subtilis # 1 305 1 309 328 177 31.0 2e-44 MCTAITYVSKDHYFGRNFDYEISYNEVVTITPRNYKFSFREVGNLDHHFAIIGIAAGIAD YPLYYDAINEKGLGMAGLNFSGYADYKKIEEGKENVSPFEFIPWVLGQCSTVDEAKKLLK NLNLVNINFSDELPLSPLHWLLADKEQSIVVESTKEGLRVFDNPVGVLTNNPTFDYQLFN LNNYRVLSTRTPKNNFSDQIELDIYSRGMGGIGLPGDLSSVSRFVKATFTKLNSVSRSSE YESISQFFHILSSVEQQKGLCDVGDEKYEYTIYSSCCNLEKGIYYYRTYDNSQITAVDMN KENLEKDSLIVYPMVETQQINYAN >gi|307679038|gb|GL456759.1| GENE 26 21972 - 22277 273 101 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229546353|ref|ZP_04435078.1| ## NR: gi|229546353|ref|ZP_04435078.1| hypothetical protein HMPREF0349_1570 [Enterococcus faecalis TX1322] hypothetical protein HMPREF0345_0672 [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis CH188] conserved hypothetical protein [Enterococcus faecalis X98] hypothetical protein HMPREF9498_00518 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9509_00007 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9512_00797 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9504_01261 [Enterococcus faecalis TX0102] hypothetical protein HMPREF0345_0672 [Enterococcus faecalis ATCC 29200] hypothetical protein HMPREF0349_1570 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis CH188] conserved hypothetical protein [Enterococcus faecalis X98] hypothetical protein HMPREF9509_00007 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9498_00518 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9504_01261 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9512_00797 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9496_01850 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9501_01700 [Enterococcus faecalis TX0027] hypothetical protein HMPREF9495_00257 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9503_00627 [Enterococcus faecalis TX0043] hypothetical protein HMPREF9508_00427 [Enterococcus faecalis TX0312] hypothetical protein HMPREF9513_00275 [Enterococcus faecalis TX0645] hypothetical protein HMPREF9511_01564 [Enterococcus faecalis TX0630] hypothetical protein EF62_0880 [Enterococcus faecalis 62] # 1 101 1 101 101 173 100.0 5e-42 MKKVCAILMISASVLGMVPSNAPIFTAEINYAHENELQMNPFVIAFIDKVKQNLVLDDNY HTVKLTEAATDEKIQKLYAEATALLVKQSSVLSSEEKQIIC >gi|307679038|gb|GL456759.1| GENE 27 22484 - 22798 400 104 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227554708|ref|ZP_03984755.1| ## NR: gi|227554708|ref|ZP_03984755.1| hypothetical protein HMPREF0346_1871 [Enterococcus faecalis HH22] hypothetical protein HMPREF0346_1871 [Enterococcus faecalis HH22] hypothetical protein HMPREF9507_01464 [Enterococcus faecalis TX0309B] hypothetical protein HMPREF9506_00680 [Enterococcus faecalis TX0309A] # 1 104 72 175 175 164 100.0 2e-39 MNRISNLFEILNGAIVLWSNELEKKVDDLFSVREEALKETVSQSDIEQLASDAEELDKLG VSYAYVEKITHKVKLVAKAVKFIYEMPQDTLVREISIASTKQEE >gi|307679038|gb|GL456759.1| GENE 28 23393 - 23635 132 80 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229546356|ref|ZP_04435081.1| ## NR: gi|229546356|ref|ZP_04435081.1| hypothetical protein HMPREF0349_1573 [Enterococcus faecalis TX1322] hypothetical protein HMPREF0345_0675 [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis ATCC 4200] conserved hypothetical protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] conserved domain protein [Enterococcus faecalis TX4248] conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX0635] hypothetical protein HMPREF0345_0675 [Enterococcus faecalis ATCC 29200] hypothetical protein HMPREF0349_1573 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] conserved hypothetical protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX4248] conserved domain protein [Enterococcus faecalis TX0635] conserved domain protein [Enterococcus faecalis TX4000] conserved domain protein [Enterococcus faecalis TX0027] conserved domain protein [Enterococcus faecalis TX2141] conserved domain protein [Enterococcus faecalis TX0043] conserved domain protein [Enterococcus faecalis TX0312] conserved domain protein [Enterococcus faecalis TX0645] conserved domain protein [Enterococcus faecalis TX0630] hypothetical protein HMPREF9520_00209 [Enterococcus faecalis TX1467] # 1 80 1 80 80 144 100.0 2e-33 MQIYAHERGNPYGCTYFISFHEIELVILLVWKDNFFTYNKQEVENNLNKMADVSTSAKRT IYQFIEKTNSLLYLSYKELH >gi|307679038|gb|GL456759.1| GENE 29 24017 - 24883 456 288 aa, chain + ## HITS:1 COG:no KEGG:Dred_0847 NR:ns ## KEGG: Dred_0847 # Name: not_defined # Def: hypothetical protein # Organism: D.reducens # Pathway: not_defined # 5 255 6 251 269 126 34.0 1e-27 MKETVSVFMDESGKNKNEISLIGSVVVPNNFYCSKSVMELNDKLKREEISFHLTDYKKSQ LKDYLNLFDLFVSNENLLRFNVVAFKRGRFSNHMLKGKIDDMVYSKIPERSIYGSLRGYS SFTEVEANIYIEYATDYEKRGLDKLIKNQLNIHSLYRYDHFKVVKAKLIYKNTEIGLEFT DACLGVLRNIIENRDVKTTSSSKVSRTLIYKKQLVYELINRHRNFFEHIDLFELDDKGLF ERIDMRKYINLFQSKYLKEKELYGEVAEVYGDSKYHVKRKPRKIPYRQ >gi|307679038|gb|GL456759.1| GENE 30 25021 - 25617 526 198 aa, chain + ## HITS:1 COG:PSLT045 KEGG:ns NR:ns ## COG: PSLT045 COG1961 # Protein_GI_number: 17233496 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Salmonella typhimurium LT2 # 1 184 1 177 186 103 36.0 1e-22 MSIYGYSRVSTSNQDYKTQIQKLERAGAEKIFSEKYTGTKKEGRKELEELLSIVKTGDKV LVTKIDRLARSIVDLNSIISSLNNSGVTITFLDNALTFEPNKSDSMQTLMMNMLGSFAQF ERDLIVTRTQEGKQWHRANNKNYREGRPKRVLNDKYKHALELMETNSMREVERKTGISLS TLKRIKKQAKEEQLLSEK >gi|307679038|gb|GL456759.1| GENE 31 25634 - 25921 295 95 aa, chain + ## HITS:1 COG:no KEGG:EFA0074 NR:ns ## KEGG: EFA0074 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 95 1 95 95 144 96.0 1e-33 MENREKIIQLFKNPLVTGYGIETMSNGRLYSANFQRYKNRVKKEENPLIIFESMTAKVEQ LFLELAEEVIRTNPKTKQEFKEMIKEYSYKEDNKW >gi|307679038|gb|GL456759.1| GENE 32 25915 - 26139 252 74 aa, chain + ## HITS:1 COG:no KEGG:EF_C0011 NR:ns ## KEGG: EF_C0011 # Name: not_defined # Def: UvrC family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 64 1 64 69 64 45.0 2e-09 MVVRKTYDHWGIEISTWNKSNIVTFIDCDCGQLAKRELGKYNQFKCDSCNKEYKLYQGNY IAIDEKINEVAQND >gi|307679038|gb|GL456759.1| GENE 33 26199 - 26408 167 69 aa, chain + ## HITS:1 COG:no KEGG:EFA0075 NR:ns ## KEGG: EFA0075 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 69 14 82 82 116 94.0 3e-25 MNFGYLNFGTKDAVLVIAIFIILILTVLFRWSALEFVFSSGAVGIAFFAGNMKQDKRISD RQNKKIDKR >gi|307679038|gb|GL456759.1| GENE 34 26750 - 27022 113 90 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229548470|ref|ZP_04437195.1| ## NR: gi|229548470|ref|ZP_04437195.1| hypothetical protein HMPREF0345_0681 [Enterococcus faecalis ATCC 29200] hypothetical protein HMPREF0345_0681 [Enterococcus faecalis ATCC 29200] # 1 89 1 89 108 130 100.0 5e-29 MGIFTNFSDFLEERRKKKHDKIRKKAEAMKRQGKSPVKKGWGTMVDTGSGGINKNPIDRV YDIGQQQKNLSSKSDEKNKFSEYQKIKKRS >gi|307679038|gb|GL456759.1| GENE 35 27055 - 27492 362 145 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229546363|ref|ZP_04435088.1| ## NR: gi|229546363|ref|ZP_04435088.1| hypothetical protein HMPREF0349_1580 [Enterococcus faecalis TX1322] hypothetical protein HMPREF0345_0682 [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis CH188] predicted protein [Enterococcus faecalis X98] hypothetical protein HMPREF9509_02810 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9512_00787 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9504_01271 [Enterococcus faecalis TX0102] hypothetical protein HMPREF0345_0682 [Enterococcus faecalis ATCC 29200] hypothetical protein HMPREF0349_1580 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis CH188] predicted protein [Enterococcus faecalis X98] hypothetical protein HMPREF9509_02810 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9504_01271 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9512_00787 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9496_01860 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9501_01963 [Enterococcus faecalis TX0027] hypothetical protein HMPREF9503_00637 [Enterococcus faecalis TX0043] hypothetical protein HMPREF9508_00437 [Enterococcus faecalis TX0312] hypothetical protein HMPREF9513_00285 [Enterococcus faecalis TX0645] hypothetical protein HMPREF9511_01574 [Enterococcus faecalis TX0630] # 1 145 5 149 149 257 100.0 2e-67 MKFKSVLFLFLASIILFGFSQQTNAESQESNVTPSQESYAHDVLNEQLSSNLSTTDAIQQ RAAYAPSTWYYTTYRSYVGYPPATIYVSVENTAVKRRSHGYLTLISTGYAPGNWRTYAGT LYLQGGPYPIPSSLKATDLLVKQDN Prediction of potential genes in microbial genomes Time: Tue Jul 5 18:22:04 2011 Seq name: gi|307679037|gb|GL456760.1| Enterococcus faecalis TX0312 genomic scaffold Scfld19, whole genome shotgun sequence Length of sequence - 1894 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - 5S_RRNA 5 - 120 100.0 # AE016830 [D:253255..253370] # 5S ribosomal RNA # Enterococcus faecalis V583 # Bacteria; Firmicutes; Lactobacillales; Enterococcaceae; Enterococcus. - LSU_RRNA 221 - 1894 99.0 # AE016830 [D:250246..253154] # 23S ribosomal RNA # Enterococcus faecalis V583 # Bacteria; Firmicutes; Lactobacillales; Enterococcaceae; Enterococcus. Prediction of potential genes in microbial genomes Time: Tue Jul 5 18:22:05 2011 Seq name: gi|307679036|gb|GL456761.1| Enterococcus faecalis TX0312 genomic scaffold Scfld21, whole genome shotgun sequence Length of sequence - 1390 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + LSU_RRNA 157 - 1390 100.0 # AE016830 [D:250246..253154] # 23S ribosomal RNA # Enterococcus faecalis V583 # Bacteria; Firmicutes; Lactobacillales; Enterococcaceae; Enterococcus. Prediction of potential genes in microbial genomes Time: Tue Jul 5 18:22:23 2011 Seq name: gi|307679035|gb|GL456762.1| Enterococcus faecalis TX0312 genomic scaffold Scfld22, whole genome shotgun sequence Length of sequence - 66694 bp Number of predicted genes - 69, with homology - 68 Number of transcription units - 41, operones - 20 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 18 - 77 9.9 1 1 Tu 1 . + CDS 157 - 1185 1413 ## COG0760 Parvulin-like peptidyl-prolyl isomerase + Term 1196 - 1230 4.5 - Term 1182 - 1219 6.2 2 2 Op 1 3/0.182 - CDS 1225 - 2169 1119 ## COG3481 Predicted HD-superfamily hydrolase 3 2 Op 2 5/0.000 - CDS 2166 - 4877 2610 ## COG4717 Uncharacterized conserved protein 4 2 Op 3 2/0.364 - CDS 4874 - 6109 1349 ## COG0420 DNA repair exonuclease - Prom 6130 - 6189 5.1 - Term 6201 - 6253 15.1 5 3 Op 1 . - CDS 6265 - 6606 552 ## COG3679 Uncharacterized conserved protein 6 3 Op 2 . - CDS 6669 - 8855 2469 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) - Prom 9035 - 9094 8.7 + Prom 9025 - 9084 6.4 7 4 Tu 1 . + CDS 9198 - 10061 534 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit + Term 10067 - 10114 15.3 - Term 10055 - 10102 15.3 8 5 Op 1 . - CDS 10185 - 10739 460 ## PROTEIN SUPPORTED gi|116334854|ref|YP_796381.1| acetyltransferase 9 5 Op 2 . - CDS 10763 - 12271 1505 ## COG1109 Phosphomannomutase 10 5 Op 3 . - CDS 12305 - 12760 744 ## COG1438 Arginine repressor - Prom 12784 - 12843 6.4 - Term 12827 - 12898 14.2 11 6 Op 1 12/0.000 - CDS 12902 - 14419 1649 ## COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) 12 6 Op 2 . - CDS 14420 - 15373 993 ## COG1125 ABC-type proline/glycine betaine transport systems, ATPase components - Prom 15440 - 15499 3.3 13 7 Tu 1 . + CDS 15646 - 16629 760 ## COG3594 Fucose 4-O-acetylase and related acetyltransferases - Term 16624 - 16679 8.2 14 8 Tu 1 . - CDS 16812 - 17045 456 ## EF0672 hypothetical protein - Prom 17112 - 17171 4.0 - Term 17134 - 17188 10.5 15 9 Tu 1 . - CDS 17190 - 18605 2134 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases - Prom 18636 - 18695 6.4 16 10 Tu 1 . - CDS 18739 - 19473 837 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases - Prom 19501 - 19560 3.3 - Term 19490 - 19538 6.4 17 11 Tu 1 . - CDS 19582 - 21231 1790 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid - Prom 21260 - 21319 5.8 + Prom 21337 - 21396 6.7 18 12 Tu 1 . + CDS 21435 - 22955 1752 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase + Term 22972 - 23013 -0.1 + Prom 22999 - 23058 10.7 19 13 Tu 1 . + CDS 23084 - 23506 480 ## COG0295 Cytidine deaminase + Term 23607 - 23655 6.4 - Term 23595 - 23643 10.6 20 14 Tu 1 . - CDS 23648 - 24220 743 ## COG0400 Predicted esterase - Prom 24271 - 24330 4.8 21 15 Op 1 . + CDS 24251 - 25225 909 ## COG0346 Lactoylglutathione lyase and related lyases + Term 25227 - 25269 10.1 + Prom 25252 - 25311 6.6 22 15 Op 2 . + CDS 25338 - 25511 333 ## EF0665 hypothetical protein + Term 25528 - 25591 23.0 - Term 25516 - 25579 23.0 23 16 Op 1 . - CDS 25587 - 26057 430 ## EF0664 hypothetical protein - Term 26076 - 26102 -0.6 24 16 Op 2 . - CDS 26110 - 26838 1100 ## COG0217 Uncharacterized conserved protein - Prom 26870 - 26929 2.6 - Term 26906 - 26964 9.8 25 17 Tu 1 . - CDS 26969 - 27478 469 ## EF0662 hypothetical protein + Prom 27403 - 27462 8.2 26 18 Tu 1 . + CDS 27624 - 29432 1974 ## COG1164 Oligoendopeptidase F + Term 29441 - 29485 9.1 - Term 29323 - 29366 -0.2 27 19 Op 1 . - CDS 29457 - 30659 795 ## COG0534 Na+-driven multidrug efflux pump 28 19 Op 2 . - CDS 30646 - 30789 78 ## EF0660 MATE efflux family protein - Prom 30902 - 30961 4.1 29 20 Op 1 . - CDS 30964 - 31614 784 ## COG1573 Uracil-DNA glycosylase 30 20 Op 2 . - CDS 31701 - 33101 1468 ## EF0658 hypothetical protein 31 20 Op 3 . - CDS 33114 - 33875 872 ## COG1349 Transcriptional regulators of sugar metabolism - Prom 33911 - 33970 4.0 - Term 33949 - 33990 4.3 32 21 Op 1 . - CDS 34004 - 34849 1189 ## COG2514 Predicted ring-cleavage extradiol dioxygenase 33 21 Op 2 . - CDS 34892 - 35488 910 ## COG3560 Predicted oxidoreductase related to nitroreductase - Prom 35563 - 35622 5.5 34 22 Op 1 . - CDS 35659 - 36594 871 ## COG1609 Transcriptional regulators 35 22 Op 2 . - CDS 36599 - 36877 259 ## EF0653 hypothetical protein - Prom 36957 - 37016 8.8 + Prom 36921 - 36980 7.1 36 23 Op 1 . + CDS 37007 - 37333 459 ## EF0652 hypothetical protein + Prom 37405 - 37464 5.0 37 23 Op 2 . + CDS 37522 - 38370 902 ## Bfae_02570 Zn-dependent protease with chaperone function + Term 38396 - 38448 16.4 - Term 38380 - 38440 21.6 38 24 Op 1 . - CDS 38441 - 39454 1160 ## COG0095 Lipoate-protein ligase A - Prom 39474 - 39533 2.3 - Term 39548 - 39601 2.4 39 24 Op 2 . - CDS 39641 - 40258 912 ## COG0778 Nitroreductase - Prom 40441 - 40500 5.8 + Prom 40250 - 40309 4.5 40 25 Tu 1 . + CDS 40388 - 40717 201 ## COG1733 Predicted transcriptional regulators + Term 40736 - 40779 2.4 - Term 40688 - 40723 4.0 41 26 Op 1 . - CDS 40731 - 41690 755 ## COG0451 Nucleoside-diphosphate-sugar epimerases 42 26 Op 2 . - CDS 41711 - 42679 967 ## COG1275 Tellurite resistance protein and related permeases - Prom 42729 - 42788 7.6 + Prom 42689 - 42748 7.4 43 27 Tu 1 . + CDS 42821 - 43648 829 ## COG0583 Transcriptional regulator + Term 43653 - 43703 11.1 - Term 43640 - 43690 11.1 44 28 Op 1 . - CDS 43695 - 44105 404 ## EF0643 hypothetical protein 45 28 Op 2 . - CDS 44121 - 44483 134 ## EF0642 hypothetical protein - Prom 44511 - 44570 6.5 + Prom 44502 - 44561 6.6 46 29 Tu 1 . + CDS 44651 - 45604 1416 ## COG0039 Malate/lactate dehydrogenases + Prom 45612 - 45671 3.6 47 30 Op 1 . + CDS 45736 - 46242 700 ## COG1267 Phosphatidylglycerophosphatase A and related proteins + Term 46247 - 46291 7.0 + Prom 46262 - 46321 5.3 48 30 Op 2 . + CDS 46381 - 46830 575 ## COG4808 Uncharacterized protein conserved in bacteria + Term 46831 - 46889 20.2 - Term 46824 - 46871 10.5 49 31 Tu 1 . - CDS 46882 - 47799 1114 ## EF0637 hypothetical protein - Prom 48010 - 48069 4.9 - Term 48075 - 48126 9.1 50 32 Tu 1 . - CDS 48156 - 49562 1698 ## COG1757 Na+/H+ antiporter - Prom 49625 - 49684 3.3 - Term 49576 - 49624 9.3 51 33 Op 1 7/0.000 - CDS 49687 - 51105 1603 ## COG0531 Amino acid transporters - Prom 51132 - 51191 3.4 - Term 51135 - 51175 3.0 52 33 Op 2 . - CDS 51308 - 53170 2188 ## COG0076 Glutamate decarboxylase and related PLP-dependent proteins - Prom 53312 - 53371 9.1 - Term 53320 - 53366 8.0 53 34 Tu 1 . - CDS 53469 - 54725 601 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 - Prom 54877 - 54936 6.2 - Term 55365 - 55405 7.1 54 35 Tu 1 . - CDS 55423 - 56868 1218 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes - Prom 56947 - 57006 5.9 - Term 56955 - 56999 8.2 55 36 Op 1 . - CDS 57034 - 57516 655 ## EF0630 glyoxalase family protein 56 36 Op 2 . - CDS 57539 - 58378 1115 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase - Prom 58474 - 58533 4.6 57 37 Op 1 . - CDS 59501 - 59962 117 ## EF0625 hypothetical protein 58 37 Op 2 . - CDS 60054 - 60680 318 ## EF2268 hypothetical protein 59 37 Op 3 . - CDS 60694 - 61239 309 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 60 37 Op 4 . - CDS 61285 - 61545 206 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 61 37 Op 5 . - CDS 61478 - 61642 126 ## EF0622 hypothetical protein - Term 61674 - 61700 0.3 62 37 Op 6 . - CDS 61701 - 61871 171 ## EF0621 hypothetical protein - Prom 61898 - 61957 2.0 + Prom 62346 - 62405 7.0 63 38 Tu 1 . + CDS 62432 - 62581 145 ## + Term 62649 - 62695 3.3 + Prom 62669 - 62728 12.3 64 39 Op 1 . + CDS 62858 - 63658 677 ## COG1378 Predicted transcriptional regulators 65 39 Op 2 . + CDS 63674 - 64552 832 ## EF0617 hypothetical protein 66 39 Op 3 . + CDS 64565 - 65545 913 ## COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog + Term 65593 - 65651 2.7 + Prom 65565 - 65624 5.7 67 40 Tu 1 . + CDS 65701 - 65928 65 ## gi|307289886|ref|ZP_07569816.1| conserved domain protein + Prom 65976 - 66035 2.9 68 41 Op 1 . + CDS 66067 - 66285 286 ## gi|293384929|ref|ZP_06630764.1| conserved hypothetical protein 69 41 Op 2 . + CDS 66344 - 66616 194 ## EF0612 hypothetical protein Predicted protein(s) >gi|307679035|gb|GL456762.1| GENE 1 157 - 1185 1413 342 aa, chain + ## HITS:1 COG:SP0981 KEGG:ns NR:ns ## COG: SP0981 COG0760 # Protein_GI_number: 15900858 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Streptococcus pneumoniae TIGR4 # 1 297 1 299 313 167 41.0 4e-41 MKKKLILAAAGAMAVFSLAACSSGSKDIATMKGSTITVDDFYNQIKEQSTSQQAFSQMVI YKVFEEKYGDKVTDKDIQKNFDEAKEQVEAQGGKFSDALKQAGLTEKTFKKQLKQRAAYD AGLKAHLKITDEDLKTAWASFHPEVEAQIIQVASEDDAKAVKKEITDGGDFTKIAKEKST DAATKKDGGKIKFDSQATTVPAEVKEAAFKLKDGEVSEPIAATNMQTYQTTYYVVKMTKN KAKGNDMKPYEKEIKKIAEETKLADQTFVSKVISDELKAANVKIKDDAFKNALAGYMQTE SSSASSEKKESKSSDSKTSDTKTSDSEKATDSSSKTTESSSK >gi|307679035|gb|GL456762.1| GENE 2 1225 - 2169 1119 314 aa, chain - ## HITS:1 COG:SP1980 KEGG:ns NR:ns ## COG: SP1980 COG3481 # Protein_GI_number: 15901803 # Func_class: R General function prediction only # Function: Predicted HD-superfamily hydrolase # Organism: Streptococcus pneumoniae TIGR4 # 10 311 4 305 308 366 58.0 1e-101 MKKLRELTVEELFESFVLIKNADVRVAKNGKKFIAFTFQDTSGTIDGKYWDASEDEITRF TAGNVVLLNGKREVYQNKPQVKILHMRLATAEEPSQPSLYMERAPLKKEEMVEEINQVIF EITNAHWNRIVRYLMTKYQQEFYEFPAAKRNHHAFANGLAYHTVSMLRLGKAIAKEYPEI NTSLLYAGIILHDLGKVLELSGAITTEYTVAGNLIGHLVLVDEEITKACLALKIDDREED VVVLRHMVLAHHGLLEYGSPVRPRIMEAEILHQIDTMDASIQMMLGAIRQTQPGEYTERI FGLDNRSFYVPKDK >gi|307679035|gb|GL456762.1| GENE 3 2166 - 4877 2610 903 aa, chain - ## HITS:1 COG:lin2324 KEGG:ns NR:ns ## COG: lin2324 COG4717 # Protein_GI_number: 16801388 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 895 1 908 908 217 25.0 8e-56 MKLLAVEIVGFGKWQQQKITFESGNQLLYGANEVGKSTLYQFIQAMLFGFPTKGKRKRDY APKNGGSYGGRLWLAHPVFGEVQVERFKEKNKGQAIIYYQQQMGDEKTLQQMLHPLTKKL FQEVFTFQQEQLITSDKLTEEELQTSLLAIGVSGSQQLLTYRNTYFKEAQKIFKGKGQQP LLNQKLAAYQELKEQIQEKEAQQQTFQQLEETIRETEQQRVTLQQQLKETQQDLLQVAEQ QRHFPLYEEWQSLPEETENVVLVKEDQVQLEETFQEYMYLDKERQRLTKELSLQSEALDV PEGYAFYLEQEALIQQLLNQRYDMQQLMTESEWMTQTFEQNRQEMVLLENEWSWSPERPP QLFYDNETVQKWRQQQVAYTQALQKGQEQKAFLASQIENLEDQLTDFEKAHAAFFGEATR AQKAQKTSQPLWLLLGSILALLGFFLPSPLKWGLVLVGVSLIAKEVLSYATRKEASSDEV KEEWKTKLSQLDYLNEQFQQALNQEREAQLQVEQLEQSVAEQAQLHQLGKMNQIDTLMNQ RELITRYLLLVQTNEELMSQLKENQQKRQGFEEQVFPLMTHLPLQGKSLSEKLHFLEGFA EEMEKVRFAQEYQADGYLKQQLRELKTKQQEALTRIQPLLIRYRILSIADVPIRIQQLTT QQAQVGRGQELATQLGNLFPEAVTEATLKDRSLQLAQQQALEESQLDKIQEQYQALIYEK QQLMTDGTLDELYQRQAILKAEIKELAQRWSGYQLAGQLLMDLLTELSEQQLPSLLQYAS SYFALLTNQRYQSIQVAEGQLVAVTKEQEMFYLHELSTGTKDQLMMAVRFAFLAVQGEQL ICPIIIDDGWLHYDHQRKAQLAELFTKFGQKQQVICFSSDQEMVSYYQDLQQRVIALEGG SVK >gi|307679035|gb|GL456762.1| GENE 4 4874 - 6109 1349 411 aa, chain - ## HITS:1 COG:lin2325 KEGG:ns NR:ns ## COG: lin2325 COG0420 # Protein_GI_number: 16801389 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Listeria innocua # 1 281 4 283 411 179 37.0 1e-44 MKLLHTADLHMDRSFEGLTGIPTALAKRLREANQQLLMNIVTVAIRETVDLVIFAGDTFH QSQTSISMQAQLMAALEQLKQAEIPVILTFGNHDYYKKDRYWFSFPDNVFLFEKEMVETL YFETKAGEQVAVSGFSYEHPWIDENKALEFPIKQAESDIHIGIYHGDTSRKAQQNYAPFT WKDLKATGYNYWALGHIHQPQIVSEQPLIVYPGTPQGHTKKEQSLQGVAVVTLSQNQATV QFEKVAEIDWTNEEVSLAQCRDTQSVLSYLETSLLTKWHAHQQQQLMALTLKETQHLDVT VVQAIVNGELLSYLQQQLLQKTQGDFFVYHLILQAEEPTKEPIYLAASPNLLTALEKTYL DPVIFEDTTKELLRYPEFAGIFSMDEQWRLESLRLAHEQINEDFTIQEDPL >gi|307679035|gb|GL456762.1| GENE 5 6265 - 6606 552 113 aa, chain - ## HITS:1 COG:lin2326 KEGG:ns NR:ns ## COG: lin2326 COG3679 # Protein_GI_number: 16801390 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 3 112 4 113 117 87 50.0 5e-18 MSNIYDTANQIERELRELDEFKALQAAYEEVKADEAAYTLFKEFQGFQQGLQEKQMRGEE FTDEDAEKAQSIATKVQETAVINELMQKEQAFSLVVNDLNRIIMTPVRDMYND >gi|307679035|gb|GL456762.1| GENE 6 6669 - 8855 2469 728 aa, chain - ## HITS:1 COG:SPy2059 KEGG:ns NR:ns ## COG: SPy2059 COG0744 # Protein_GI_number: 15675827 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Streptococcus pyogenes M1 GAS # 34 722 93 777 778 616 49.0 1e-176 MDNLKQFFSKVGVGLRHFWTWIKPYLIQFHQARKRIWKKYQINKIFLLIGLVVALGASIY LFYLAKSANVETLKSGLSESTRVYDESGEEVGKLFGQKGTFVELDNISPYIQDAVISTED RGFYQHKGYSIKGIARAVVGKLTFGKIGGGGGGSTITQQLAKNAYLTQEQTLDRKARELF LAIEIEKKYSKKDILAMYLNNSYFGNGVWGVQDAARKYFGVDASQVTVGEAATLAGMLKG PGIYNPIDYIDNATARRNTVLQLMVDNKKLSQEEANQEASVNLASLLNDTYVGDENSYKY PYYFDAVIDEAVNRYKFKEEDILNKGYKIYTSLNQKYQDAMDATYKNDTLFPPNAEDGAM VQSGSVAIDPKTGGVQALVGGRGEHVYRGFNFATQTKRSPGSSLKPISVYTPALEAGYKP DSVLEDKPQDYYPAQNYSRTYSGEVPMYQALGESLNLPAVWLLHQIGLDKGYEKTEKFGI PLSEKDRYYGLALGGLQTGVSPLTMAGAYSAFANEGYKTETHLITKIVDSTGAIVVDNTK VKKEQVITKDVADGITSMLLGVFSSGSGVNAQPAGYVMAGKTGTTETNFDSSKTNDQWVI GYTPEVVIATWLGFQETSKTHYLEGSSATYASQVFNSQASGILPQVKQAQFPVADAYATG GKVVDSNDSLTGGANSNWRDNLKDFGNSVQDGASNFGDTLNEVGGQIKDGAKKVKDKIEG IFGGLLGN >gi|307679035|gb|GL456762.1| GENE 7 9198 - 10061 534 287 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 3 280 5 276 285 210 44 2e-53 MEYSMRLPENFSTMTVKELLENEWLVPRKVRHFLRTRKNVKINGETAAFHFPVQAGDCVT LTFEETDYVFPTIHLGEATRVKVLYEDEHLMIVNKPYGIKTHPNQPQETDTLLNHVAAYL AEKNQVPYVVHRLDKETSGAIVFAKNPFVLPILGRLLETKQIYRQYQAIVAGHFNQKEQT INQPIGRDRHDRRKRRIDPQKGDSAITHVQVVKALSNNQTAVTCVLETGRTHQIRVHLAS EGHPIIGDPLYNPKSQAARLMLHASQLHLLHPFTKKQIVVTAAPGLW >gi|307679035|gb|GL456762.1| GENE 8 10185 - 10739 460 184 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116334854|ref|YP_796381.1| acetyltransferase [Lactobacillus brevis ATCC 367] # 1 176 1 176 177 181 50 7e-45 MENVLKGKHVGFSHFREEYIEHIAKQQWDNELLRHLSWDALHPWGLEEWKDFTINKGEDD RFLFAILENTTEEFIGWVSLSDVQLKNRGANLGIAILQKEQRGQGYGFEAVSLICKFAFY ELGLHKIRLAVNSNNQNAIHVYEKVGFKKEGIDREALFQDGQWLDIYNYGILQKEWLQMI KAES >gi|307679035|gb|GL456762.1| GENE 9 10763 - 12271 1505 502 aa, chain - ## HITS:1 COG:lin1985 KEGG:ns NR:ns ## COG: lin1985 COG1109 # Protein_GI_number: 16801051 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Listeria innocua # 4 489 9 495 503 545 57.0 1e-154 MVELKALQNGSDIRGIALDTEEQTATLTATAVAEIAVGVVRWLQDKKQLPRKAQQRLTIA IGHDSRLTAEPIKQALVDTFLSLGIQVIDVGLATTPAMFMATQFPTFQCDAAIMITASHL PYYFNGLKFFTAEGGAEKEDIRYILSHTDPLTANENGTLMKQELLPIYAEHLVEKIRQGI HSPEEKPLQGFRIIVDAGNGAGGFFAEQVLQVLGADTTGSQFLEPDGHFPNHVPNPDNSE AMKSIQTAVLANQADLGIIFDTDVDRSAVVDQSGEVLNRNNLIAVLAAIVLKEAPGSYIV TNSPTSSHLKTFIEEKGGQQIRYISGYRNVINKMIELNHGGFQTPLAIETSGHAAFQENY NLDDGAYIVAKILMLLPELKQNNQTLGDLIATLKQPAETNEFRFKITAEDVTCYGQQVLR DFELFVENQADFAVDRENQEGVRGNVSGQYGSGWFLLRLSLHEPLLVLQVENDQSDKNAC VIEKIATFLQKYEEIDSQQIEK >gi|307679035|gb|GL456762.1| GENE 10 12305 - 12760 744 151 aa, chain - ## HITS:1 COG:lin1404 KEGG:ns NR:ns ## COG: lin1404 COG1438 # Protein_GI_number: 16800472 # Func_class: K Transcription # Function: Arginine repressor # Organism: Listeria innocua # 1 150 1 149 149 105 37.0 3e-23 MKKAERQRLIKQLIMQQEIETQDELITRLEDFGVRATQATVSRDIREMSIVKTHGADGRV KYAIFSQAQGTSSEEKLRESVKDSVVRMERVQFIVILHTEMGNADVVSNFLDEVAYPEVA GTVAGADTIIVITRSEEDAEHFIERIENMIF >gi|307679035|gb|GL456762.1| GENE 11 12902 - 14419 1649 505 aa, chain - ## HITS:1 COG:SP1860_2 KEGG:ns NR:ns ## COG: SP1860_2 COG1732 # Protein_GI_number: 15901688 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) # Organism: Streptococcus pneumoniae TIGR4 # 212 505 5 298 299 338 58.0 1e-92 MQALIETFFARKEEYLQALIEHMQLSFISLLFAALIAIPLAIYLTSHRKLAESLLQVTGI FQTIPSLALLGLLIPLIGIGRPPAIVALVIYALFPILQNTYTGLTEIDPSLEEAAEAFGM SKKEKLFKFELQMALPFIISGIRTATVLIIGTATLAALIGAGGLGTFILLGIDRNNLSLI FIGALSSAALAVLFNYGIHWLEKANGRRLIIGGTILGLLLGGSFFWNQQTSSKEKQLTIA GKLGAEPDIIINMYKALIEENSDIQVTLKPNFGKTTFLYNALKSDEIDLYPEFTGTVIET FLKNPPQLDNQPQVVYEAARAGLKNQENLTLLKPMRYENTYAVAVKRSFAKAHQLKTISD LQKISNQLKAGFTLEFIDRQDGYKGLQEKYHLNLNVQSMEPALRYQAINNGEVNVIDAYS TDSELKQYDLVTLEDDQALFPPYQGAPLIKTATLEKYPELAEILNKLAGKISEEEMSEMN YQVNVEGQDPSIVAKDYLKEKNLLK >gi|307679035|gb|GL456762.1| GENE 12 14420 - 15373 993 317 aa, chain - ## HITS:1 COG:lin1460 KEGG:ns NR:ns ## COG: lin1460 COG1125 # Protein_GI_number: 16800528 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, ATPase components # Organism: Listeria innocua # 1 317 1 325 327 306 50.0 3e-83 MIKFQNVSKVYQENAVLSDVNLTIQQGEFFVLVGPSGSGKTTTLKMINRLIEPTTGEVAL NEQAVTNYPLRELRLKIGYVLQQIALFPNLTVAENIELIPEMKKWPKEQRRERTIELLKK VQLDPEEYLHRKPAALSGGEQQRIGILRAIAAEPEVILMDEPFSALDPISRHHLQRLVKE LHQELASTIVFVTHDMNEALLLGERICIMDAGKIIQVDTPEAIQKHPKNNFVGQFFKQSS PELANYCGADLTAFLEATDETIEPVPTVFMETNLKEIVQLINAQEKANLVEKQQVLGCIT SKTITRFMEQLLESEGQ >gi|307679035|gb|GL456762.1| GENE 13 15646 - 16629 760 327 aa, chain + ## HITS:1 COG:lin0994 KEGG:ns NR:ns ## COG: lin0994 COG3594 # Protein_GI_number: 16800063 # Func_class: G Carbohydrate transport and metabolism # Function: Fucose 4-O-acetylase and related acetyltransferases # Organism: Listeria innocua # 2 274 16 288 343 94 29.0 4e-19 MKLFLIFLVIFGHILDREASPSRLMETINFWIYSFHMSAFIFVSGLFSKHAIKQRKYLRL LSFVWLYLLAKLLITLANFAFANKMNFDLLNETGVPWYLLSLASFYLITIFLQRVQPKIM LPIIIVIGCASGYLPVEGFLSLGRTLGFFPFFYCGYLMDIQKLQTFLDHRKVKWAAVGVI LSSFLFVNSQWSLATKFWGFLTGWASYAEISPAFEYSSFIQLFFYVAAALVSLSWFALLP KRKLPLSALGKDTLYPYLLHMPLIILLESGLQLDTLFKEWFTFRILALFFLALFILAITN MPVVKRGADYLFNPIAYVLPKQWLKVK >gi|307679035|gb|GL456762.1| GENE 14 16812 - 17045 456 77 aa, chain - ## HITS:1 COG:no KEGG:EF0672 NR:ns ## KEGG: EF0672 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 77 1 77 77 129 98.0 4e-29 MSETLIVNYLIKGRVKMNVEELVQKAKDLIGEGNVEHAQQFIEEHKDELGEHYHKITAML ADTTTDDLFDKIKGLFQ >gi|307679035|gb|GL456762.1| GENE 15 17190 - 18605 2134 471 aa, chain - ## HITS:1 COG:SPy1070 KEGG:ns NR:ns ## COG: SPy1070 COG0624 # Protein_GI_number: 15675062 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Streptococcus pyogenes M1 GAS # 2 471 3 469 469 551 58.0 1e-157 MTIDWTKEVEARKDDLLEDLQNLLRINSERDDAQATPEAPFGPGPVAGLKHMLAYGERDG FTVKNVDNYAGHIEYGEGDETLGIFGHMDVVPAGDGWETDPYEPVIKDGKIYARGASDDK GPSMAAYYAMKIIKELGLPVSKKIRFVVGSDEESGWGDMDYYFQHEEAPDFGFSPDAEFP IINGEKGNVTIRLTFRGGNGADYKLESFKSGLRENMVPGTAAAVVTAASADEAASLAASF ETFIKQEAKISGNAELSDKTVTFHVVGKGAHGASPQSGINAATFLATFLNDYSFAEGAYS FINTIAEFIHEDFYGEKLGVAFEDEKMGKLTMNAGIVNFDPENPENSLVTLNFRYPKGTS AEELQAKVQATVGETVTATQGDRNQEPHYVPVDDPLVATLLQVYEDHTGEKGQEQIIGGG TYGRLLKRGVAYGAMFPGYTDTMHQANEFMELDDLFRAAAIYADAIYRLAK >gi|307679035|gb|GL456762.1| GENE 16 18739 - 19473 837 244 aa, chain - ## HITS:1 COG:lin2436 KEGG:ns NR:ns ## COG: lin2436 COG1187 # Protein_GI_number: 16801498 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Listeria innocua # 1 239 1 233 233 268 59.0 6e-72 MRLDKFLADVGIGSRKEIKQLLKKKVVTVNGDVVKEAKTQVNEETDQIALMGEILTYQKF FYYMLHKPQGVISATEDQRDETVIDLLTDQDYRADLFPVGRLDKDTEGLLLLTNDGQLAH QLLSPKKHVDKEYLAEVEGLVTVEDCQLFAQGFALKDGEMVKPSRLVIETINEEEGTSVV RLVIQEGKFHQVKRMLATVGKPVTYLKRLRMGELWLDETLELGEYRPLTEAELQQLQPKQ SYLN >gi|307679035|gb|GL456762.1| GENE 17 19582 - 21231 1790 549 aa, chain - ## HITS:1 COG:SP1529 KEGG:ns NR:ns ## COG: SP1529 COG2244 # Protein_GI_number: 15901374 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Streptococcus pneumoniae TIGR4 # 19 548 1 528 529 447 47.0 1e-125 MINQPNSVDQPILTNQEKMVKGSAWMTASNIISRMLGAIYIIPWYAWMGEHGNEANSLFS MGYTIYALFLMISTAGIPGAIAKQTSHYNSLNEYKISRQLFYRALQLMGGLGVVFAIVMY LASPALAALSGGGPELVPTMRSLSLAVLVFPSMSVIRGYFQGNQEMMPFALSQIVEQVAR VFYMLLTAFIIMKVFEGNYVTAVTQATFAAFIGMLASFAVLGYYMYKQKPLFDYLEEHSA NEHEIAPKELLIETFKEAIPFIVVGSGVTVFKLVDQFTFSNFMRLFTDYSDTQLRELFGI FNANPDKLTMIVVALATSISATGLPLITEAVTLKNHRELARLISNNLQLFVFVMLPATFG MIVLAQPLYTVFYMPDALGTSLLVQACYASLFLGLYMLVSNMLMGMYENRDAMRYLGIGL AVKLIVQFPAIRLFEVYGPLLATMIGFTVSCVLILRRIRQVTRFNYKLTLRRTLLMFCIT VIMMIIALIFRQFLYLFLDPTRRFQAFIIVVIVAAAGGAFYGYSVLKIRLADRLLGKNAA KLRAKFNIK >gi|307679035|gb|GL456762.1| GENE 18 21435 - 22955 1752 506 aa, chain + ## HITS:1 COG:SPy0388 KEGG:ns NR:ns ## COG: SPy0388 COG0769 # Protein_GI_number: 15674533 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Streptococcus pyogenes M1 GAS # 3 501 2 478 481 455 50.0 1e-127 MTISLFAIRDCLEKEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFCKG LNFKEIYLENAVKDGLEIYVSEVPYEVPAQLGIIVTDIKKAMAVLSMAFYDYPQNKLKLI GFTGTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMA TAVANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQL ITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESP ADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESLTNTN GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGTVLSELADVA VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA DLYQKVNGVDEPYAGDFALAKMIIDK >gi|307679035|gb|GL456762.1| GENE 19 23084 - 23506 480 140 aa, chain + ## HITS:1 COG:SP2068 KEGG:ns NR:ns ## COG: SP2068 COG0295 # Protein_GI_number: 15901887 # Func_class: F Nucleotide transport and metabolism # Function: Cytidine deaminase # Organism: Streptococcus pneumoniae TIGR4 # 1 136 1 137 144 172 56.0 1e-43 MDIWKKMYEYAKKEYHPQEVTPFIYTHHVVCALEAEDGQLFTGFCFESCCGVLDLCAERV AALNMYADSEQTVIKRIITFRDDVPNGISGMPCGACRELLLQLSPKNADTEILVDYQKRE IVRLKELMPKWWGWSRYTND >gi|307679035|gb|GL456762.1| GENE 20 23648 - 24220 743 190 aa, chain - ## HITS:1 COG:BS_yodD KEGG:ns NR:ns ## COG: BS_yodD COG0400 # Protein_GI_number: 16079014 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Bacillus subtilis # 1 188 1 193 200 62 28.0 5e-10 MKQFFQKGSKPNQLVVAFHGTGGNEYQLLTTIATLYPEASVLSYLGTEGVGEQRRFFAPL VNGALPRANFDERVTAFLEEVWQPQKLYDEVIFIGYSNGANFILGLLEKNPTIANTVILL HPSNLGYQYVSGEFATKVIVTTGAQDELSIPGQVLSLANQLKKHFPVDFLLVDGGHGLSE EEVTKIKEVL >gi|307679035|gb|GL456762.1| GENE 21 24251 - 25225 909 324 aa, chain + ## HITS:1 COG:BS_ykcA KEGG:ns NR:ns ## COG: BS_ykcA COG0346 # Protein_GI_number: 16078352 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Bacillus subtilis # 5 318 6 312 316 182 37.0 5e-46 MYAQIHHISILNRLIKPTFDFYHNTLGLKLLMKTINQDDHTMYHLFFSDNEQRTGTELTF FELNDGQDQSFGTNTIERTILKVPTRASLDFWAERLEQAGICHYGVETFNQHPILRFEAP DNTQMALVPLREFENAEDYFPAEHSEIPVEHAILGIDAIQLRVQYAAATKQPLVDYLHWH EKETVPFFETAHEVTVLENHHPQFYQEVHIIDDRTNPLAIEGIGGVHHVAFGVEDTQELT QVDSLLDEKNFTNSGIKDREFFKSLYFREPNHLLFEIATQKGLLDAEAYENQSSNFDEIP LYLPHFLADQRERIEAILAQQRHE >gi|307679035|gb|GL456762.1| GENE 22 25338 - 25511 333 57 aa, chain + ## HITS:1 COG:no KEGG:EF0665 NR:ns ## KEGG: EF0665 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 57 1 57 57 73 100.0 3e-12 MLSKEEVLHLLNEAKKEVDRLETNRQEDLGNSINYIENELQLQRVLSQVEAYEKVLG >gi|307679035|gb|GL456762.1| GENE 23 25587 - 26057 430 156 aa, chain - ## HITS:1 COG:no KEGG:EF0664 NR:ns ## KEGG: EF0664 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 156 1 156 156 295 100.0 3e-79 MEGILKKRICLQAIREEAEAYYRNGDFYCSEAIVATIRQHFDAEIPIEAVAMASGFPVGV GGAKCICGALSGGVMCLGYFFGRTEAKGEQVNKTMALANELHQSFRQKHRVVCCSILTSK MTMGSPEHMEQCIGFTGEIAETTAKIIARELAYELV >gi|307679035|gb|GL456762.1| GENE 24 26110 - 26838 1100 242 aa, chain - ## HITS:1 COG:lin1570 KEGG:ns NR:ns ## COG: lin1570 COG0217 # Protein_GI_number: 16800638 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 240 1 239 241 298 62.0 7e-81 MSGHSKWSNIQGRKNAQDAKRGKIFQKVSREIYMAAKAGGPDPAMNPALRLAVDKAKSAN MPNDNIARAIKKASSAGEGEHYDEVTYEGYGPGGVAVLVHALTDNRNRTATNVRVAFTRN GGSLGETGSVNYMFDRKGYIVIKREDHAIEEDDMLEVVLEAGGEDLETSPEVFEIYTAPE DFTAVRDALEQAGYSLAQAELTMVPQTLLTLNDEQKAQLERLVDKLEDDDDVSEVFTSAE NL >gi|307679035|gb|GL456762.1| GENE 25 26969 - 27478 469 169 aa, chain - ## HITS:1 COG:no KEGG:EF0662 NR:ns ## KEGG: EF0662 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 169 1 169 169 319 98.0 3e-86 MKNYLKDSNLYLVIAFVIMAILFFSSSQTYEQQSQVGLLDKLLSSHPFEEQLKNISFQYA GSEVSIQASGYSKFVEFFIRKGAHFGTYFLLGGSWFIGLVPRIKGLFLTAVVSWLAATGY AGLDEFHQMITGGRTPLFQDVMLDAMGALTAIVICLVVHGLKKNKKRRR >gi|307679035|gb|GL456762.1| GENE 26 27624 - 29432 1974 602 aa, chain + ## HITS:1 COG:lin1528 KEGG:ns NR:ns ## COG: lin1528 COG1164 # Protein_GI_number: 16800596 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Listeria innocua # 3 601 5 601 602 575 49.0 1e-164 MTYSITWDLDSIFPNGSESKELSQRMTQLTEQTKEYHQLITEWTPESAQGKEQFAEILTL QGKISNGFSQCNSFLTALISANTNDTKAKILSGDLYNLLPAIQLAETIFTKKITEISAEH WQDLLAEEPFKTMAFRLNELRRDGKKLLSEQEENIINTLSLDGLNAWSTHYDTIVASIVI PFEEKDGSVTELSAGQAFNRMMGDPDKEVRQRLFTAWEKAWSGKASILADTLNHLDGFRL SDYKLHGTTDYLENPLNYNRMSQETLTVMWETIQKNKQPFVDFLTRKAQLFGKEKMDWQD QDAPIILGDLEEKTYSFDQAAAFILENFRKFSPKMADFAQMAFEKSWIEAEDRPGKRPGG YCTELPETQESRIFMTFGNSINEVATLAHELGHAFHSSVMWDLPSLNREYAMNVAETAST FAELIVADATLKEAKSDVEKINLLDTKMQNAIAMFMNIHARFIFENNFYLARQKGLVAEE DITELMLAAQKESYKDSLGSYHPHFWASKLHFFIDDVPFYNFPYTFGYLFSMGIYAYANQ QGSSFEDQYIALLRDTASMTSEELAKKHLNVDLTKPDFWQAGIDQVLKDVEQFMTLTENY VN >gi|307679035|gb|GL456762.1| GENE 27 29457 - 30659 795 400 aa, chain - ## HITS:1 COG:lin2192 KEGG:ns NR:ns ## COG: lin2192 COG0534 # Protein_GI_number: 16801257 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Listeria innocua # 1 395 51 443 443 162 28.0 7e-40 MAGLNIVLPLVNIINGLGWMFGVGGATLFSTTVAQKEIKKANQYFSLTIGLVFVIGSLFT LASLIFSDQIIRGLQGTGVLFGLAKEYYMIYLSCSLLFILNNCLITFLRNDHNPRLATIA FVSGGIVNIILDYVFIYQFGWGMAGAAIATVMSPLTSLILITLHKWSPQRVLRFEKFKVK FQDVREIMSIGFSSFLNEFSSAFVMFLFNIVLLNLVGHVAISAYAIVANLNIIVIAIFTG IGQGAQPLLSRYYGLGETKVLRKFVKLSFITYLVAGFLFFLISQVFTGQIIEVFNSEGND QLAQIARTAIRLYAISFLFTGLNFMGIYYFSAVRKPKMALMISSLRGFFLIVPVLFILVK LLGLTGVWLAMPVVEFVTFGLMLVGYLAYRNYLKKREAVT >gi|307679035|gb|GL456762.1| GENE 28 30646 - 30789 78 47 aa, chain - ## HITS:1 COG:no KEGG:EF0660 NR:ns ## KEGG: EF0660 # Name: not_defined # Def: MATE efflux family protein # Organism: E.faecalis # Pathway: not_defined # 1 34 1 34 446 70 100.0 2e-11 MEQTQQNHFTALFYKNVLLGILSMAAQSIFILADHCKWDRHRGIGGA >gi|307679035|gb|GL456762.1| GENE 29 30964 - 31614 784 216 aa, chain - ## HITS:1 COG:CAC0219 KEGG:ns NR:ns ## COG: CAC0219 COG1573 # Protein_GI_number: 15893511 # Func_class: L Replication, recombination and repair # Function: Uracil-DNA glycosylase # Organism: Clostridium acetobutylicum # 22 203 25 188 199 113 34.0 3e-25 MHYPEHLKQAVLAKAKDLPLEGFVEGQGPQQPKVMLIGEAPGKEEIKENVPFIGRSGQLL MEQLQQVGLSRETVYITSAVRSRPFSVKTKQIAKTGERVTKFPNRTPTKEEIKIFAPLLD WEIAVCQPELILTLGNIGLQRLLGPKPTITAVHGTVIQSPIQTFDEQSQNYHWTQKTYQI IPLFHPAAVFYNYRLKEVVKEDWQVVQKQLQLLKKV >gi|307679035|gb|GL456762.1| GENE 30 31701 - 33101 1468 466 aa, chain - ## HITS:1 COG:no KEGG:EF0658 NR:ns ## KEGG: EF0658 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 466 1 466 466 919 98.0 0 MKRKINYTHIAEPTVFENVFPTYLTNETMMARKQKVLQRMETEKFDQLVFYADKEHGSNF EYLTGFIPRFEEGLLVLNKDGMATLILGNENLKLCQHARISADLIHYPAFSLPNQPMDGE QKLSQIFETLLDETAQKIGIVGWKMFTTQQQEPATMFDVPHFIVEALKKALPKEARLLNG THLLIGAKGARTTNNANELAHYEYGANLASRSMLKALNAIEVGQRETDIGALLNDEGQMP TVVTIAATGQRFEYANMYPTAKEIQLGDALSLTTGYKGGLSSRTGFVIENEQQLPEAQRD YLERVAKPYFQAVVHWLETIRIGLLGREMYQAIEEQLPKEIYHWHLNPGHLVSDDEWMSS PIYPDSAIRLESGMLFQVDIIPSVPGYTGVSAEECVALANETLQKEIQQTYPDMWQRIAT RKAYLKETLKIDLPSEVLPMSNLVGYLRPFYLAKDKALCVEKPAPK >gi|307679035|gb|GL456762.1| GENE 31 33114 - 33875 872 253 aa, chain - ## HITS:1 COG:L0153 KEGG:ns NR:ns ## COG: L0153 COG1349 # Protein_GI_number: 15673279 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Lactococcus lactis # 1 253 1 253 253 243 51.0 3e-64 MLIEERLAKIQKIVNEQKSISMEALAEQVSVSKDTIRRDLIRLEKEGHLKRTHGGAISVQ SEATIYDYAQRIMKHPEKKQAIAQKVWANIPKQASIFFDSSTTVEAAIRAMENSPIHAIT NSLSHALLLAQMDQTKITVLPGQLHKQQLFLFGAETVAKVGEFAPDYTLLGVFALSEQGL FIHTEEEGQVKRRMIQQGKQVIALADQTKLNKTGLFKICELTEIDCLVTDTRPDEKFCEQ LAQAGVTLIVADE >gi|307679035|gb|GL456762.1| GENE 32 34004 - 34849 1189 281 aa, chain - ## HITS:1 COG:lin0649 KEGG:ns NR:ns ## COG: lin0649 COG2514 # Protein_GI_number: 16799724 # Func_class: R General function prediction only # Function: Predicted ring-cleavage extradiol dioxygenase # Organism: Listeria innocua # 13 279 12 278 279 186 41.0 4e-47 MVQALPSNIGIQQVTLKVADLDKMVNFYTKTIGLKLLKQGEGRAWLAPQGTNDAILVLKE LTAGEENQGTTGLYHIAFLLPTRKDLGNMLLWLLQENVQIGAADHGYSEALYLSDPENNG IEIYWDKPEEVWDIRPNGEIIGVTEELDGDSLAAEADGHWLGISEGSKIGHIHLKVADLD ATETFYKNLGFGLKSNFGQQAKFFAAGQYHHHIGANTWSGKQLPTIQENQFGLENYTFRL PTAADLEIVQANAEEAKLHFIAKDHLLALEDPSGMIIQFTY >gi|307679035|gb|GL456762.1| GENE 33 34892 - 35488 910 198 aa, chain - ## HITS:1 COG:BMEII0772 KEGG:ns NR:ns ## COG: BMEII0772 COG3560 # Protein_GI_number: 17989117 # Func_class: R General function prediction only # Function: Predicted oxidoreductase related to nitroreductase # Organism: Brucella melitensis # 6 197 7 198 199 231 56.0 8e-61 MSKFTEMMKNRRSIYALGENLPISKEEVTALVKEVVRESPTAFNSQTQRVVFLFGDAHKK LWAMTEDALKPLTPAEAFPNTQAKLQGFAAGAGTILFFEDTDIVKNLQDSFPLYADNFPV WSEQATGLTQANVWTALAQENIGANLQHYNPVIDEAVAAEWSIPANWNLRAQMVIGSIEA PAGEKEYMEDSARFKEFN >gi|307679035|gb|GL456762.1| GENE 34 35659 - 36594 871 311 aa, chain - ## HITS:1 COG:lin2880 KEGG:ns NR:ns ## COG: lin2880 COG1609 # Protein_GI_number: 16801940 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 305 1 316 318 248 40.0 1e-65 MTTIREIARLSGSSVTTVSRVINHHPYVSEEKRLKIQAIIDELGYKPNILARNLSFGKSN TLGVMVPYTNQPYFDAILSGIIHQAFQQGMMVSLLPTDYDKEVEKSYLEKMATGAFDGMI VLSKANPLSVFAPYKEQVVFCEKIEDPSYASIYIDRLTVYRRVFQALKQQGCSEVAITIN RAPEKSTSARYLVDAYQEIYGAIPENRLFKDCLTYEDGCEVGRHCGQDPTLQAVVTNGDE IAAGIQAVIERPLFLVGQEQTLLSEILNFSTICHPLMELGEKATHLFQEKRPKTIQLTST FINRQPDFSFS >gi|307679035|gb|GL456762.1| GENE 35 36599 - 36877 259 92 aa, chain - ## HITS:1 COG:no KEGG:EF0653 NR:ns ## KEGG: EF0653 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 91 1 91 92 166 97.0 2e-40 MNVIVEISDRLGMDYYFVSVTTTEKSLQLNSPKKYYKIWHQEIPYHQITEWHLTQQEDIQ EISFAWQETFYRFIDYGTGIVPYLTQFCKVMG >gi|307679035|gb|GL456762.1| GENE 36 37007 - 37333 459 108 aa, chain + ## HITS:1 COG:no KEGG:EF0652 NR:ns ## KEGG: EF0652 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 108 1 108 108 170 99.0 2e-41 METVTVATKSDLLTNLNKQTDEIIISGALAQEIYHLKKQQLTETEEMGFLVGSQGAGSFL TYLIEKLSYINSELSPEEQKIEHAILRLYVIKKLTPETTLLRLKQLDY >gi|307679035|gb|GL456762.1| GENE 37 37522 - 38370 902 282 aa, chain + ## HITS:1 COG:no KEGG:Bfae_02570 NR:ns ## KEGG: Bfae_02570 # Name: not_defined # Def: Zn-dependent protease with chaperone function # Organism: B.faecium # Pathway: not_defined # 16 274 53 326 441 135 30.0 2e-30 MCQPQEKKKEISVAKLRYRFELPMIIIGFVLLFLALGLVALLILSDLPIPDWLLIVLIAP IAPVIAFFTIRYMYMDTASNGVEITENQLPEIYSLYIDLAKEMGFGTKKLRMPRLYLING NGVLNAFAAKCSLHRRYVVIHSDLLDIAYNTGDFSLIRFILAHELGHHKCGHTNLWRLML SIILKPVALDKSFTRTQEYTADRAGLYYAEEGALSMIYLFSGKYMGSRVDLEEYFHSIDL HDDTIWLKLSNFLSDHPVGFRRMQTLKKAKDTGNWDVHGKFF >gi|307679035|gb|GL456762.1| GENE 38 38441 - 39454 1160 337 aa, chain - ## HITS:1 COG:lin0931 KEGG:ns NR:ns ## COG: lin0931 COG0095 # Protein_GI_number: 16800002 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Listeria innocua # 9 335 10 330 331 302 47.0 7e-82 MRYVIMQSRDIRENLATEDYLLNTLSFEEPLVLFYIQEPCVILGRNQNAYEEIDLAYARE KGIVITRRLSGGGAVYDDLGNVSFSFVVQEGHQAFGDFKAFTKPIIEALHKMGATGAEIS GRNDLLIDGKKFSGNAMYTKKGKMYTHGTLMYDVDLAEVQRVLTVSKKKIESKGTKSVRG RVTNLRPYLDEKYQKLTIEEFRNRLLMELFDVESLTEIAEKEYVLTKTDQQEIRKLVAEV YGNEAWIFGEAPKFTIKKEEKFKGGIVDARLTVEKGKIIELTIYGDYFAKKETAEIVAAL LGVDYQYSSIWQALAAFNFEDYFVNITKEEFVHLLVD >gi|307679035|gb|GL456762.1| GENE 39 39641 - 40258 912 205 aa, chain - ## HITS:1 COG:BS_yodC KEGG:ns NR:ns ## COG: BS_yodC COG0778 # Protein_GI_number: 16079013 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Bacillus subtilis # 5 204 6 202 202 129 37.0 3e-30 MMYQDVVRSRRSVRDFMPDVEIPKEELMAIIEEAMFAPNSTNLNSWRFLIVTEKEQKEAL YEVSMQQPAVKGAAAVIILLGDLTAYTVANADEISAKAVAQGTMTEEIRQGINENVSWYY DVSEEQKREWLMLDQGLVAMQLMLSAKDRGYDTVAMSGFKTEAVRKLFNIEDHLVNGLII PIGKAQTPGFETVRRDVSEVVTWLD >gi|307679035|gb|GL456762.1| GENE 40 40388 - 40717 201 109 aa, chain + ## HITS:1 COG:alr2106 KEGG:ns NR:ns ## COG: alr2106 COG1733 # Protein_GI_number: 17229598 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Nostoc sp. PCC 7120 # 9 97 15 103 110 97 49.0 5e-21 MTTDKQTSINLALSTINGKWKLSLMDELFQGTKRNGELMRALDGITQRVLTDRLREMEKD GLVHRESFNELPPRVEYTLTPEGYALYDALSSLCHWGETFAQKKARLNK >gi|307679035|gb|GL456762.1| GENE 41 40731 - 41690 755 319 aa, chain - ## HITS:1 COG:L12335 KEGG:ns NR:ns ## COG: L12335 COG0451 # Protein_GI_number: 15672193 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Lactococcus lactis # 4 312 7 310 313 328 55.0 8e-90 MKKLLITGGAGFIGSNLANFYSQQYQVFVIDDLSMGRVSNLQQTEQLVFIKGSVTDQQLL DEVLSKHSFEYIFHLAAVASVASSVAQPLETHEVNFLSVLKILESIKKYQKELKRFVFAS SAAVYGAEPTLPKRETSVICPLSPYAIDKFAAERYVLNEYHLHGVPTSAVRFFNVYGPNQ NPASPYSGVLSILMDRYIQLEQGQASQFQIFGDGQQTRDFIYIEDVLTALDLVATKSEAL GHVYNVGTEVAISLNQLIEEMNQLVGLSLPVSYQKERDGDIKYSLSDSSALKGLGFSPVY SIQEGLQKYLKFTHNTQNR >gi|307679035|gb|GL456762.1| GENE 42 41711 - 42679 967 322 aa, chain - ## HITS:1 COG:L181867 KEGG:ns NR:ns ## COG: L181867 COG1275 # Protein_GI_number: 15672360 # Func_class: P Inorganic ion transport and metabolism # Function: Tellurite resistance protein and related permeases # Organism: Lactococcus lactis # 8 309 9 307 324 250 53.0 2e-66 MVESAKKFLRKVPIPICGLILGIVSLGNLLYSLGYATIGTIYCVLGSLLMILVILKIIFT MKHALSTLDDPIIASVSPTFTMALMVICVFLDRIFTNAAWINVLWIGAVILHFILMIYFV AVHIFPTKIELEHIYPSWFITFVGIGVIPNTSQLFINELGKIVFWVALFFYLLLLPILIK RITKSKEMPESTIPLLTIMTAPGSLCLAGYISMGGHLYMPLVVFLLILSQCIYGIVVVNL YKIMQVTFYPSYAAFTFPLVISATALVKVKPLFAEKVGLTSLLNILSTFELLLAVAIVSY VFIRYCIFLFQRENNTKKVELN >gi|307679035|gb|GL456762.1| GENE 43 42821 - 43648 829 275 aa, chain + ## HITS:1 COG:L0220 KEGG:ns NR:ns ## COG: L0220 COG0583 # Protein_GI_number: 15672356 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 241 1 242 272 153 35.0 3e-37 MFEWIKTFIAVYETKNFSAAAKQLYISQPTVSLQIKKLEQHFSIKLFYRNGKQSVIPTKE ADFLYPKMLSIIESLTTSFAQAAEKENFKEDCIIASSNTVAIYLLPDIMESLVTAFPLIN FSIQLMNSNEVVDMVQNNHAHIGLIEKPIETKNLHKEIVYEDQLVLAGDAASKFWLLREK NSGLRFFNELYLNEHSINLPIIELNNNEVLLQLLKNNIGQSIVSRLSISDEIPWQPIDQS FASRKIFIVQTDHHANTSFSEVYNRIVEKIRERQT >gi|307679035|gb|GL456762.1| GENE 44 43695 - 44105 404 136 aa, chain - ## HITS:1 COG:no KEGG:EF0643 NR:ns ## KEGG: EF0643 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 136 1 136 136 203 97.0 1e-51 MKQVKITTTSDLINGGCNACPNVKCTNYLVHVEDETIALETLTVADLVTLLALKEGFRQK LVMEMFEEYTMFERETHQVVFKEEETRILFQSKKQTIQSTLLSKEPQQVFQETQQILHQL FELEPFEFELVEETDK >gi|307679035|gb|GL456762.1| GENE 45 44121 - 44483 134 120 aa, chain - ## HITS:1 COG:no KEGG:EF0642 NR:ns ## KEGG: EF0642 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 120 1 120 120 207 97.0 1e-52 MTTTTVYYASNNEKQPNCFQLVIGSCSYELPKIEIYEILECVASAYGYQKEPCIEEQTEC FVKGNRCIHVSQQAMTLTFVVNDLRLVMEKQCRNHEEVFQEVNHILLNIFEETPCVFLEK >gi|307679035|gb|GL456762.1| GENE 46 44651 - 45604 1416 317 aa, chain + ## HITS:1 COG:L0018 KEGG:ns NR:ns ## COG: L0018 COG0039 # Protein_GI_number: 15672358 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Lactococcus lactis # 1 314 1 314 314 450 71.0 1e-126 MKVFNKKVAIIGTGFVGTSIAYSMINQGIANELILVDIDKAKSEGEAIDLLDGVSWGQEN VNVWAGDYQDCQDADIVVITAGANQKPGQSRLDLVSINAEIMKTIVNNIMKSGFDGILVI ASNPVDVLTYVAWQASGLPVSRVIGTGTTLDTTRFRKELSQRLAIDPRNVHGYIIGEHGD SEVAVWSHTMIGTKPILEIVDTTERLTSDDLPIISDKVKNTAYEIIDRKQATYYGIGMST ARIVKAILNNEQAILPVSAYLDGQYGQQDVFTGIPAVVGNQGVTDIIELNLNAAEKELFQ KSVTQLKQVMASLQPNA >gi|307679035|gb|GL456762.1| GENE 47 45736 - 46242 700 168 aa, chain + ## HITS:1 COG:lin2497 KEGG:ns NR:ns ## COG: lin2497 COG1267 # Protein_GI_number: 16801559 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylglycerophosphatase A and related proteins # Organism: Listeria innocua # 1 162 1 162 166 196 67.0 1e-50 MVIQGDTLENSARRLLQERGVTMNDLAELVLFLQKDYIDNLTLDTCLESVDAVLTKREVH NAIITGVQLDILAEENKLLSPLQEILTEDEGLYGIDEIMALSIVNVYGSIGFTNYGYIDK VKPGILKELNAHDGEHVHTFLDDIVGAIAAAAASRLAHSQPDLSDITK >gi|307679035|gb|GL456762.1| GENE 48 46381 - 46830 575 149 aa, chain + ## HITS:1 COG:STM2156 KEGG:ns NR:ns ## COG: STM2156 COG4808 # Protein_GI_number: 16765485 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 3 149 6 152 152 105 43.0 2e-23 MKKFLRVFLIFIGVFFLASCGSKIETKTFVGSPQDGIDSTLTYTYQGDKVLTQTAKNIVS YDKLGITKEEAKTALEPVSKQYEDIKGLDYKLTYEDKQAIEKLTINYEKLDYDKAKKVDG IQIDGDSSKGISMKKSQELVESEGYTEQK >gi|307679035|gb|GL456762.1| GENE 49 46882 - 47799 1114 305 aa, chain - ## HITS:1 COG:no KEGG:EF0637 NR:ns ## KEGG: EF0637 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 305 1 305 305 446 98.0 1e-124 MKKIGLISSAFLLTLALAACGGGKSTENTDSRSSAAESTTFESTKASATKESSSKAATKS SDAKPSGTTIADSKATASSTKEAANNGSAEKQSPAKNANPDDQANQVLNQLANMFPGQGL PQAILTSQTNNFLTAATTSQADQNNFRVLYYAEKEAIPVNDARVNQLTPISSFEKKTYGS DAEAKNAVNQIIDNGGQPVDLGYNITGYKQGAAGSSYLSWQEGNWSLVVRASNINGESPD DLAKNVVNILEQETLPAPNTVGQITLNVAGTTDYNRNSVVWQAGTVVYSVHHFDPIQAVK MATSI >gi|307679035|gb|GL456762.1| GENE 50 48156 - 49562 1698 468 aa, chain - ## HITS:1 COG:NMA0715 KEGG:ns NR:ns ## COG: NMA0715 COG1757 # Protein_GI_number: 15793692 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Neisseria meningitidis Z2491 # 11 448 13 450 459 308 40.0 2e-83 MKSTKPTVSFAESLGILVALLAILGYLIIGQKLTPHIPILFVFMLLLLYGKWKGFSWDEI HEGIVEGIKPGIIPIIIFLLIGVLVATWILSGTIPTIMVYGFKIISVKFFLPTVFVVCAL VGVTVGSSFTTVSTMGIAFLGIGHILGFDNAMTAGAVVSGAFLGNNISPLSDTTNLAAGI GGVNLFEHILNMMYTVIPAFIISIVGYIFLGHQSGSADLQSVDAMVQTLHQGFWISPITL LPVAVLFLFAWKKVPAIPTLLVGSTVAVILAFINDHHLSLAKVSTILMSGYVADTGDQSI DTLLSRGGIESMLGSAALIILALGLGGLLIKFNIVATLIDKIKGYVNNPAKLIALTALSS VGINLLVGEQYLSIILPGETFKSSFTRLGIDKKYLTRTLADAGAAVNSLIPWGVSGTFIM GTLKVGALEYLPYAFFPLLCPVITVILGIFLKKQQGENKKAPGTNVEL >gi|307679035|gb|GL456762.1| GENE 51 49687 - 51105 1603 472 aa, chain - ## HITS:1 COG:BMEII0909 KEGG:ns NR:ns ## COG: BMEII0909 COG0531 # Protein_GI_number: 17989254 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Brucella melitensis # 5 464 20 484 510 175 26.0 2e-43 MDKQQVKKIELGTFIGLTMALCATVRSIPTLAAVGWTLISYTIFAVLFFAGPIALISGEL STMLPQEGGPQLWVKTALGSKWGFVVAWLLWVQMFPGMVMVASTLGPLLGNTFGNVHLGE NHWFVLGCILVIYWIITILNLKFDMAKVGGNIGVWLGVYIPVLVMFVLGLLSMIKVGLTP GGYLGAFSWSKVLPNLENMDTFKYLAGIAFIFVGIEMSSVYIPRLKDATKNYTKGVFISL IGLVLLNVINAMFVANIVPNGKMELSNITQPILLYCDVLGLPTIIGNIFSFMVFLGVLLQ LSAWVTGPSKTIIQVARDGLLPPKFGFHRENKYGVSRNVVLTQSVVISLFALLYGVMDDV NAVFLTLTNATTIIYSIVYVLIAISLIKLRKSQPDTLRPYRIGKKGNGLAYLVAAMLIFS VIIVIFATLGTTTVTDAVLVALITIVMFVIPLIINRFKKASWATEVKEDLGE >gi|307679035|gb|GL456762.1| GENE 52 51308 - 53170 2188 620 aa, chain - ## HITS:1 COG:VC1149 KEGG:ns NR:ns ## COG: VC1149 COG0076 # Protein_GI_number: 15641162 # Func_class: E Amino acid transport and metabolism # Function: Glutamate decarboxylase and related PLP-dependent proteins # Organism: Vibrio cholerae # 84 510 87 442 548 120 27.0 1e-26 MKNEKLAKGEMNLNALFIGDKAENGQLYKDLLIDLVDEHLGWRQNYMPQDMPVISSQERT SESYEKTVNHMKDVLNEISSRMRTHSVPWHTAGRYWGHMNSETLMPSLLAYNFAMLWNGN NVAYESSPATSQMEEEVGHEFAHLMSYKNGWGHIVADGSLANLEGLWYARNIKSLPFAMK EVKPELVAGKSDWELLNMPTKEIMDLLESAEDEIDEIKAHSARSGKHLQAIGKWLVPQTK HYSWLKAADIIGIGLDQVIPVPVDHNYRMDINELEKIVRGLAEEQIPVLGVVGVVGSTEE GAVDSIDKIIALRDELMKDGIYYYVHVDAAYGGYGRAIFLDEDNNFIPYEDLQDVHEEYG VFKEKKEHISREVYDAYKAIELAESVTIDPHKMGYIPYSAGGIVIQDIRMRDVISYFATY VFEKGADIPALLGAYILEGSKAGATAASVWAAHHVLPLNVAGYGKLIGASIEGSHHFYNF LNDLTFKVGDKEIEVHTLTHPDFNMVDYVFKEKGNDDLVAMNKLNHDVYDYASYVKGNIY NNEFITSHTDFAIPDYGNSPLKFVNSLGFSDEEWNRAGKVTVLRAAVMTPYMNDKEEFDV YAPKIQAALQEKLEQIYDVK >gi|307679035|gb|GL456762.1| GENE 53 53469 - 54725 601 418 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 10 392 16 394 418 236 36 3e-61 MNIIDELAWRDAINQQTNEEGLRELTENTSISLYCGVDPTGDSMHIGHLIPFMMMKRFQL AGHHPYILIGGGTGTIGDPSGRTTERVLQTMEAVQHNVDSLSNQMKKLFGKDAEVTMVNN YDWLSELSLLDFLRDYGKNFNVNTMLAKDIVASRLESGISFTEFTYQILQSIDFYTLHKK HNIQLQIGGADQWGNITAGLDLIRKKEGPEAKVFGLTIPLMLKADGTKFGKTAGGAIWLD PKKTSPFEFYQFWLNQDDRDVIKYLKFFTFLDKEEIDALAEKVEKEPGKREAQRRLAEEV TRFVHDDAALEEAQKISEALFSGNIKDLTIEEIEQGLEHVPTVEITKDAKNIVDWLVDTE IEPSKRQAREDVSGGAISINGDRVTDLDFAVDPTQHFDGKFVVVRKGKKNYFLAKVMD >gi|307679035|gb|GL456762.1| GENE 54 55423 - 56868 1218 481 aa, chain - ## HITS:1 COG:lin2646 KEGG:ns NR:ns ## COG: lin2646 COG1502 # Protein_GI_number: 16801708 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Listeria innocua # 13 481 15 482 482 455 47.0 1e-128 MILSVLTVIYFINAIIAGITILLKPRDVAAIWAWLLVLIALPVFGFFLYLFFGRGLTDKK KFYLQQSDLRELENFQNFQEESFELYSQKMPTEEQQQFTDFFSSLNRMPLTKKNDVEIFT DGTEKFNALMADIKKAQHSIHIEYYAFVTDHIGTKILNLLEEKAAEGVEVRLLYDAFGSK GTKVHHLNELKKNGGFVQTFITSQKALLKFRLNYHDHRKIVVIDGKVGYIGGFNVADQYA GTTKKFGYWRDTHLRIQGPAASLLQMRFLMDWNVSSPEKNRVAYQLDYFFKLEALVPEAN TSIQMIASGPNSDREQIKLAFIKLITSAKKRVWIQTPYLVPDDSVLAALKVAAASGVDVK IMIPDKPDHPFIYRATQYYGRLLMKENIEILIYNGGFLHAKTMIMDDEVCTVGSANQDIR SYKLNFEANAVLYDKKIIDQLEAIFLEDRKKCTTMTPEVVRDMSKWLIFKQQISRLFSPI L >gi|307679035|gb|GL456762.1| GENE 55 57034 - 57516 655 160 aa, chain - ## HITS:1 COG:no KEGG:EF0630 NR:ns ## KEGG: EF0630 # Name: not_defined # Def: glyoxalase family protein # Organism: E.faecalis # Pathway: not_defined # 1 160 1 160 160 312 99.0 2e-84 MSEAVKGFSVVNHVGITVSNLDESVKFYEALTGTKIANRDEIGGKRMAQTQGLDDTLIKY ANVHLENINIDLLEYVKPKSEKASYSNEQISAMHMCFEVEDIDAAVARLRAIGVEPDGEP ITFQEEDGLKSGFGTGVAYFTDPDGTNLELIAPKGPFTRN >gi|307679035|gb|GL456762.1| GENE 56 57539 - 58378 1115 279 aa, chain - ## HITS:1 COG:L132617 KEGG:ns NR:ns ## COG: L132617 COG0656 # Protein_GI_number: 15672315 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Lactococcus lactis # 11 279 3 272 272 350 67.0 2e-96 MITSLADTVTLNNGTKIPGMGLGVFQIPDEETAKVVEEGIINGYRLIDTAQIYGNESGTG AGIKAGLAATGLNREDLFVTSKVWNAHISYDETIQAFNDSLERLGLDYLDLYLIHWPGNN SYKESWQALETLYAEGKVKAIGVSNFQVHHLEDLLSYAKVVPVINQVELHPKLDQKEVRD FCEKHDIKVQAWSPLMQGQLLSNETILAIAENHNKSAAQVILRWDIQQDILLAVKSVHKE RMISNAAVFDFELSAEEMAQINQLNESLRVGPDPDTFDF >gi|307679035|gb|GL456762.1| GENE 57 59501 - 59962 117 153 aa, chain - ## HITS:1 COG:no KEGG:EF0625 NR:ns ## KEGG: EF0625 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 153 54 206 228 292 96.0 3e-78 MTYVYLLQISEYLEISLPLDLRTKLKIPILSTYYIADNQDVLNPINDSDHVNFRYVYDSY RNMKKELGKHCSQRNFFRGESSGLMFYKTEDIYFTLFNGLYGSSHGHVSTGSFTLQLQGD DLISDSGCYSYVNKAEWLQPKECDSHNTMFIKD >gi|307679035|gb|GL456762.1| GENE 58 60054 - 60680 318 208 aa, chain - ## HITS:1 COG:no KEGG:EF2268 NR:ns ## KEGG: EF2268 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 204 1 204 642 351 82.0 1e-95 MNLQKIENYQLKFYQQDWLSGYLEKHSKLLEPLFERTYFLLKDQIIYNDAMDMEACSIPY SLKEYTWNRYPGDDPEWLFMLSRQSFLLDLSQAYALTKEKCYLQKWRSLLLDFIQEEGEP NSTNRNVWRPLDVGIRVMNWLKSLTYISIADYKQLGIDKVLRNALLVHLEYLERSYIDKY RLSNWGVLVTGGMAAMDLFLPELVNRVN >gi|307679035|gb|GL456762.1| GENE 59 60694 - 61239 309 181 aa, chain - ## HITS:1 COG:SP0325 KEGG:ns NR:ns ## COG: SP0325 COG3716 # Protein_GI_number: 15900257 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Streptococcus pneumoniae TIGR4 # 2 129 130 259 272 111 45.0 9e-25 MDGLGFAPMGFWLSMLISMLVIKLLMGYLGFKLGTSVIETLSDKIGKISSAANIVGVTVI AALATSFVKANIAIKYSHNVESGEKQVIAIQDILDKITPKMLPVILTILVFYLIKKRKWN TYQLLIFFICDWDSSLCLRDFSIVSERSKGQGFRFRVNLVSLFISFLSDGHNIFSVNGNK I >gi|307679035|gb|GL456762.1| GENE 60 61285 - 61545 206 86 aa, chain - ## HITS:1 COG:SP0325 KEGG:ns NR:ns ## COG: SP0325 COG3716 # Protein_GI_number: 15900257 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Streptococcus pneumoniae TIGR4 # 5 86 31 112 272 94 54.0 3e-20 MKTFYQGVSYLYTIMPALKKIYKDEPEKLKETASANLEFYNTNPQMLPFITSMQLAMYDN DQSVSDTRSIKMALMGPLSGIGDSIA >gi|307679035|gb|GL456762.1| GENE 61 61478 - 61642 126 54 aa, chain - ## HITS:1 COG:no KEGG:EF0622 NR:ns ## KEGG: EF0622 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 54 1 54 54 88 96.0 7e-17 MKTITLYEILGEEGSDKYISVFKSLIVSNFTENEDILSRCQLFIHNNASAEENL >gi|307679035|gb|GL456762.1| GENE 62 61701 - 61871 171 56 aa, chain - ## HITS:1 COG:no KEGG:EF0621 NR:ns ## KEGG: EF0621 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 56 1 56 56 84 91.0 2e-15 MPIPNQFIDYPLARIKDSIVRKQINPALYPNKLYGNRSWDTFYRYDNQLVYESSYY >gi|307679035|gb|GL456762.1| GENE 63 62432 - 62581 145 49 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKKGIPYCPKPRNTFERGLFKYFEGKKGQDLKEENQKKKSKKKSEYVF >gi|307679035|gb|GL456762.1| GENE 64 62858 - 63658 677 266 aa, chain + ## HITS:1 COG:BS_yrhO KEGG:ns NR:ns ## COG: BS_yrhO COG1378 # Protein_GI_number: 16079765 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 2 266 3 263 275 104 24.0 2e-22 METIIQIMKKYDFSEMETRVYTTLLEKGNLTGYEVSKISGVPRSKVYNILEKLLKKNLIV VNKSEPKLYHAISANEFLENLEKSVKNDLSFLTKNLGMIKEKDEEDMLWKVDGIEYVLDK AEHLVKNAKESLLIQVWHENLTDSLLKALQQAEKRVDKFVLILFSSTHEYDLPLEKYYIH GFETDKLADFGARWINIVADEQEVVFGTINEELQSTDVTWTKNHAMVNLAKEYVKHDAYT LKVIAESSEELKAKYGEDFEGIRKIY >gi|307679035|gb|GL456762.1| GENE 65 63674 - 64552 832 292 aa, chain + ## HITS:1 COG:no KEGG:EF0617 NR:ns ## KEGG: EF0617 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 292 1 292 292 491 99.0 1e-137 MIRNILLALIVAINLYFIIYFLRDLFKNKQNFKEEPGDMRLLPFTSFITFFLSTFGVSDF AIGTVLYPKLKWVSMKKLPGTLNTQCVVPVAVMALSYITAINVGIKTLAVCIICQIIGAY LGPRFVVKLPEKTIKLFVGIGLVIAAFLIFMGQMNWIPSNGTASELYGGKLILAGFLLFV YGALNNIGIGSYALTMVTVYLLGLNPVAAFPIMMGACTFSVPIGSVQFIKFDEYSRKITL FTSTFGVLGVLVAVFLVKSLDTYILKWIVILVLLYSAYTMLSSQLKKATATN >gi|307679035|gb|GL456762.1| GENE 66 64565 - 65545 913 326 aa, chain + ## HITS:1 COG:MA3252 KEGG:ns NR:ns ## COG: MA3252 COG2423 # Protein_GI_number: 20092068 # Func_class: E Amino acid transport and metabolism # Function: Predicted ornithine cyclodeaminase, mu-crystallin homolog # Organism: Methanosarcina acetivorans str.C2A # 1 325 3 323 326 184 35.0 2e-46 MLFLKKEDIIKSFSMREAIDADKKALSLYSAGKASVPLRTNIDVPKSNGQSLYMPAYVEG GEGALGVKIVSVYPENIKKNLPSVPATMIVLDPETGMVSACLDGTYLTQLRTGAVQGAAT ELLAKEDAKIGALIGTGGQAQSQLEAMLTVRKLEEVRIFDIDFERASQFAEEMMQQFSVT MRPTKTNQECVEGADIITSVTTSKRATFSAEWVKKGAHINGVGAYTPEMCEIPREIIKAA DIVIFDTMDGVLKEAGDFISPLQDGYIQRDSYHGELGQLINEELVGRTSGEQITIFKTVG SAVLDVVVATEIVKKAKENNLGKLIY >gi|307679035|gb|GL456762.1| GENE 67 65701 - 65928 65 75 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307289886|ref|ZP_07569816.1| ## NR: gi|307289886|ref|ZP_07569816.1| conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX0017] conserved domain protein [Enterococcus faecalis TX0043] # 1 75 1 75 75 137 100.0 2e-31 MSLYPVEGSINCICWIYHPSFSLVIEGTYDKKSGKYFYDFYSMKLDPKTKKSKQHRIYCT HVPVKVMYRRVRNYL >gi|307679035|gb|GL456762.1| GENE 68 66067 - 66285 286 72 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293384929|ref|ZP_06630764.1| ## NR: gi|293384929|ref|ZP_06630764.1| conserved hypothetical protein [Enterococcus faecalis R712] conserved hypothetical protein [Enterococcus faecalis S613] conserved domain protein [Enterococcus faecalis DAPTO 512] conserved domain protein [Enterococcus faecalis DAPTO 516] conserved hypothetical protein [Enterococcus faecalis R712] conserved hypothetical protein [Enterococcus faecalis S613] conserved domain protein [Enterococcus faecalis DAPTO 512] conserved domain protein [Enterococcus faecalis DAPTO 516] # 3 72 12 81 81 129 100.0 8e-29 MNFFQNVFTDFVGDFKYLIMLAMLDGAAYIAFERKASKAIPLILVLAVAVWLVGDTSDVF NWILDRMRSWGR >gi|307679035|gb|GL456762.1| GENE 69 66344 - 66616 194 90 aa, chain + ## HITS:1 COG:no KEGG:EF0612 NR:ns ## KEGG: EF0612 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 19 59 5 45 91 71 85.0 1e-11 MWDRVALPRPVTQTFAIWFGISFFGGIFRIFPFVMEHTITRQIFCPWLFAFLMTRKQFQS LSSHISSHIFHHTHISWLAEKGYPLKAIMD Prediction of potential genes in microbial genomes Time: Tue Jul 5 18:23:46 2011 Seq name: gi|307679034|gb|GL456763.1| Enterococcus faecalis TX0312 genomic scaffold Scfld23, whole genome shotgun sequence Length of sequence - 15113 bp Number of predicted genes - 15, with homology - 15 Number of transcription units - 12, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 109 - 168 5.0 1 1 Tu 1 . + CDS 194 - 790 620 ## LCK_p400006 RepB-like protein + Term 903 - 959 11.1 2 2 Op 1 23/0.000 - CDS 1085 - 1903 391 ## COG2801 Transposase and inactivated derivatives 3 2 Op 2 . - CDS 1900 - 2457 386 ## COG2963 Transposase and inactivated derivatives 4 3 Tu 1 . - CDS 2840 - 4189 392 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 - Prom 4218 - 4277 2.2 5 4 Op 1 . - CDS 4327 - 4950 467 ## LACR_C36 amidase 6 4 Op 2 . - CDS 4977 - 5141 63 ## gi|256854634|ref|ZP_05559998.1| conserved hypothetical protein 7 4 Op 3 . - CDS 5215 - 5790 466 ## COG1309 Transcriptional regulator - Prom 5867 - 5926 5.5 + Prom 6407 - 6466 5.8 8 5 Tu 1 . + CDS 6645 - 7079 291 ## COG3464 Transposase and inactivated derivatives - Term 7493 - 7530 6.1 9 6 Tu 1 . - CDS 7549 - 7827 242 ## gi|229546320|ref|ZP_04435045.1| hypothetical protein HMPREF0349_1537 - Prom 7920 - 7979 7.2 + Prom 7889 - 7948 7.8 10 7 Tu 1 . + CDS 8009 - 8950 909 ## COG2267 Lysophospholipase + Term 8993 - 9037 11.7 - Term 8855 - 8897 1.6 11 8 Tu 1 . - CDS 8995 - 10254 553 ## COG3328 Transposase and inactivated derivatives - Prom 10288 - 10347 8.8 12 9 Tu 1 . - CDS 10556 - 10708 174 ## gi|229546323|ref|ZP_04435048.1| hypothetical protein HMPREF0349_1540 - Prom 10872 - 10931 4.6 + Prom 10676 - 10735 5.0 13 10 Tu 1 . + CDS 10809 - 11045 78 ## COG1396 Predicted transcriptional regulators + Term 11285 - 11330 8.3 + Prom 11341 - 11400 9.1 14 11 Tu 1 . + CDS 11464 - 13578 1424 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 13612 - 13665 8.2 15 12 Tu 1 . - CDS 14449 - 14934 403 ## COG3328 Transposase and inactivated derivatives - Prom 15033 - 15092 9.5 Predicted protein(s) >gi|307679034|gb|GL456763.1| GENE 1 194 - 790 620 198 aa, chain + ## HITS:1 COG:no KEGG:LCK_p400006 NR:ns ## KEGG: LCK_p400006 # Name: not_defined # Def: RepB-like protein # Organism: L.citreum # Pathway: not_defined # 1 166 1 166 188 140 72.0 4e-32 MSEELKTIKELADELGVSKQAIQYHIKSLTNKNRQTNDKGVTVLSAIEQEFIRGKVDKQT NKNKTNEPTKKRQTDKQKEPNINQYLLNEIEEVKKNRDKQLAVKDKQIENKDIQIAQMQN LLDQQQRLALQDKKLLEEYKAENDSLKALKMPTEDTKENQSQEEVQTLKKQMEALNDKIK GQEQANNQSSKKWYQFWK >gi|307679034|gb|GL456763.1| GENE 2 1085 - 1903 391 272 aa, chain - ## HITS:1 COG:L0470 KEGG:ns NR:ns ## COG: L0470 COG2801 # Protein_GI_number: 15672806 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 272 1 272 272 513 99.0 1e-145 MKVTGFPKATYYYWVNCFERVNKDELIEKEMLKIRQEHANAGYRPMSELLKQRGYHVNHK KVQRLMKKLGLRVTSYWHKSRKYNSYKGKVGTVAKNKLHRRFRTSIPHQKITTDTTEFKY YEDGIQKKCYLNPYIDLFNSEVISYHISKQPSYQSIDIALNQALAVTSDCPYRRTFHSDQ GWGYQMRDYVSKLKSHRIFQSMSRKGNCHDNSVMENFFGLLKQEIYYGHIFSSFEELEQV IVIWIRYYNTKRIKQKLNWMSPIQFRLNYQNN >gi|307679034|gb|GL456763.1| GENE 3 1900 - 2457 386 185 aa, chain - ## HITS:1 COG:L28615 KEGG:ns NR:ns ## COG: L28615 COG2963 # Protein_GI_number: 15672622 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 185 1 185 185 320 99.0 7e-88 MVKYSIELKQRVIQDYLSGKGGSTYLAKLHNVGSSSQVRRWIRNYRAEGLPTAHSKVNKN YSMELKENAVQCYLTTDLTYEAVARKFEITNFTLLASWVNHFKIYGEVPISKKRGRRKKL ESIASSMTQNPNDSQRIKELEQELRYAQIEVAYLKGLRRLEKNALMNKNQDSSTVSVKPS NSKKS >gi|307679034|gb|GL456763.1| GENE 4 2840 - 4189 392 449 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 1 444 1 450 458 155 26 2e-37 MKKIDVKNIVVGFGKGGKTLAKFLAGKGESVVVIEQSPRMYGGTCINIGCIPSKFLIVNG EKGLKFTEAAEKKAMLTGNLNLKNYHMIADEATAEVIDGKAKFVSDHEIEVMDAEGEVIA QLIGERIFINTGATPVLPPIPGLVDSRNVVTSTELMDLKQLPEHLTIIGSGYIGLEFASM FASYGSKVTVLDIFDNFLPRDDEDISKLVRSDLESRGIIFKLGVKIVAITDNSVEIINKE GKKVSILSDKILVATGRKPNTAGLGLENTNIQLGQRGEIVVNDKLETTVQNVWALGDVHG GLQFTYTSLDDFRIVSNNLYGDGKRSLSDRKNVPTSVFITPALSKVGLNEKDAKAAGIDY RLFKLAATAIPKSAVLNQSKGLLKALVDPETDKILGITIYAEESYETINLISLAIEVGLP YTLLRDKIYTHPTMTEALNDLFAAKNEIK >gi|307679034|gb|GL456763.1| GENE 5 4327 - 4950 467 207 aa, chain - ## HITS:1 COG:no KEGG:LACR_C36 NR:ns ## KEGG: LACR_C36 # Name: not_defined # Def: amidase # Organism: L.lactis_SK11 # Pathway: not_defined # 1 207 1 207 207 416 100.0 1e-115 MFNNKNTAFVVTDPQVEFLKPKGAGYGLTKDILRKYHTTENLTELFKHAKAKGYKIFISP HYFYDHDQNWKFGGQGEQMMLNNKMFHREHQYQETVKGSGADFVEELKPYLDENTIITSP HKIFGPESNDLALQLRKNGIDTVILAGMNANLCVDSHLRELVESGFHVHVAADATGAPGQ EAYDAAITNFGFVADRTMSTAKVLEEL >gi|307679034|gb|GL456763.1| GENE 6 4977 - 5141 63 54 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256854634|ref|ZP_05559998.1| ## NR: gi|256854634|ref|ZP_05559998.1| conserved hypothetical protein [Enterococcus faecalis T8] conserved hypothetical protein [Enterococcus faecalis T8] # 1 54 3 56 56 90 100.0 4e-17 MSAVESKEKVKILQADAIRREYPIAIVQKRWQSCQTFIDVLGKGILKQLITELS >gi|307679034|gb|GL456763.1| GENE 7 5215 - 5790 466 191 aa, chain - ## HITS:1 COG:mlr8177 KEGG:ns NR:ns ## COG: mlr8177 COG1309 # Protein_GI_number: 13476759 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Mesorhizobium loti # 5 184 16 198 225 67 24.0 1e-11 MRNTKEKILTATEQLIYKKGYTGTSINDILDETATGKGQFYYYFDSKKEASLAVIDNHVK IWQKHLLNGILSRDESPLANLKEMLDWIYSDHAQKKIYYGCPVGNLVIELSALDEDFRKP LEQLFSDLQKKIAENLSALTGLLVKQNLPAAHAIIAQIQGSLLLLKVTQDLNVLESNFDL LKTSFEKVGEK >gi|307679034|gb|GL456763.1| GENE 8 6645 - 7079 291 144 aa, chain + ## HITS:1 COG:SA0369 KEGG:ns NR:ns ## COG: SA0369 COG3464 # Protein_GI_number: 15926085 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 1 120 178 297 439 119 49.0 1e-27 MSFIFMNAVNHEVIDIVENRQQHYLSDYFMRYSLNARLRVKTVTMDMYSPYIGLIKACFP KADIIIDRFHIVQHLNRALNHVRIQTMNSLRYTRPRDYRKLKKQWKLVLKNEADLNFHDF FTHRLYTGMVSEYVMANYLVELSP >gi|307679034|gb|GL456763.1| GENE 9 7549 - 7827 242 92 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229546320|ref|ZP_04435045.1| ## NR: gi|229546320|ref|ZP_04435045.1| hypothetical protein HMPREF0349_1537 [Enterococcus faecalis TX1322] hypothetical protein HMPREF0345_0637 [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] conserved domain protein [Enterococcus faecalis TX0411] hypothetical protein HMPREF0345_0637 [Enterococcus faecalis ATCC 29200] hypothetical protein HMPREF0349_1537 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX4000] conserved domain protein [Enterococcus faecalis TX2141] conserved domain protein [Enterococcus faecalis TX0043] conserved domain protein [Enterococcus faecalis TX0312] putative lipoprotein [Enterococcus faecalis 62] # 1 92 22 113 113 132 98.0 6e-30 MNEEKNQYKIKMIFISLLTVAVLAGCSETAEETPQTNSPDETTAVTKSTSDTSDSETATE EDLSESEAESPNEKYKELTIQDYFNLEGLFVK >gi|307679034|gb|GL456763.1| GENE 10 8009 - 8950 909 313 aa, chain + ## HITS:1 COG:lin1226 KEGG:ns NR:ns ## COG: lin1226 COG2267 # Protein_GI_number: 16800295 # Func_class: I Lipid transport and metabolism # Function: Lysophospholipase # Organism: Listeria innocua # 21 288 19 284 306 146 34.0 6e-35 MAIHEVEFKSFNEIETVKGWIYTPIREPIGVVQIVHGYGEHSRRYLHMILTLNEAGFVVA ADDHVGHGKTAYDSDNWSNWGDKGYMTMAEDEQKLRELIKEDYGDLPYFMFGHSMGSMIA RLYATKYGEELDGLILCGTSEIFPEMENIVSELKAEIDAGNGEQVDPDYQNRMFEWMTER IENPNTPNDWISKDPDIVADHANDPFNNFTPVPNIQSLYQFAQMIQQILGTEWSEKVPTD IPIYNIAGDEDPVGRYGEGVYAVSNWLLETGHQVKTKLYSGYRHEIHNHREIRDEVVAGI IDFITEHARVKAN >gi|307679034|gb|GL456763.1| GENE 11 8995 - 10254 553 419 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 390 1 390 391 393 50.0 1e-109 MNDFTTEILKTLANKGDLNELFRVHLEKAVNTLLKTELTAFLDYEKYDRIGFNTGNSRNG SYDRTVKTEYGELHPQIPRDRNGEFKQQTVPAYRRTNDTLEETIIHLFRKGITMSEIADL IEKMYGHHYTPQTMSNITKSFTEEVTAFKGWELHDRYAAIYMDATYIPLKRKTVAKEAIH IAVGIRPDGSKEVLSYAIAPTESITIWEEILLDLQERGLKNVLLFITDGLKGMVGAISRF YPKARFQHCCVHVSRNISHKVRVDDCKEVCDDFKMVYQASSKEVALEARGAFAEKWKTSY PKVVESILSNDHLLTFYDFPLAIRKSIYSTNLIESFNKQIKKYSHRKEQFQNEESMERFL VSSFDTYNQKFLGRSHKGFQQAEGELEQMLSQLIVSNSPSVDSSTLFDREPRIWQLPYS >gi|307679034|gb|GL456763.1| GENE 12 10556 - 10708 174 50 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229546323|ref|ZP_04435048.1| ## NR: gi|229546323|ref|ZP_04435048.1| hypothetical protein HMPREF0349_1540 [Enterococcus faecalis TX1322] hypothetical protein HMPREF0349_1540 [Enterococcus faecalis TX1322] hypothetical protein HMPREF9496_00280 [Enterococcus faecalis TX4000] # 1 50 1 46 46 77 92.0 3e-13 MGEIACGDPILAEEYIEEYREEIDENLPTGEVFYLKTKGNSMVPTIPSDS >gi|307679034|gb|GL456763.1| GENE 13 10809 - 11045 78 78 aa, chain + ## HITS:1 COG:SPy2126 KEGG:ns NR:ns ## COG: SPy2126 COG1396 # Protein_GI_number: 15675874 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 62 4 65 68 67 56.0 5e-12 MSLKAARANAGFTSKEAAKTADVHFQTLSKYEKDSSDIPFSLLNELSNLYQVPINNIFLG EEYDLIRIINNKRNEVMN >gi|307679034|gb|GL456763.1| GENE 14 11464 - 13578 1424 704 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 60 701 149 809 815 553 43 1e-157 MANFYGNDPFFNNDMDDVFNQLFRRMDNQNSERARYLVNGQSLTPDEFAQYRATGKLPQN NKTIEVSKDGKQAVKKGGILEKLGTNLTEQARDGLLDPVIGRENEIQETAEILSRRTKNN AILVGDAGVGKTAVVEGLAQAIVAGKVPETIQDKEIYSIDLSSLEAGTQYRGSFEENIKQ LVEEVKAAGNIILFFDEIHQILGTGATGGEDGGKGLADIIKPALSRGELSVIGATTQDEY RNTILKNAALARRFNDVVINEPTAADTLRILQGVKELYEKHHHVVLPDDVLKAAVDYSIQ YIPQRTLPDKAIDLIDMTAAHLAAKNSQTDVETLDQRLKKLEAAKEAAIKAEDFTKAADI KKSIEETKKKIKETDQKEKITATIDDVAQSVERLTGIPVSDMGANDIERLKNLDKRLKSK VIGQDEAVEMVAKAIRRNRAGFSEGNQPIGSFLFVGPTGVGKTELAKQLALDMFGNENAI IRLDMSEYADRTAVSKLIGTSAGYVGYEDNANTLTERVRRNPYSIVLLDEIEKADPQVLT LLLQVMDDGRLTDGQGNVINFKNTIIIATSNAGFGNEALSGDKQRDQSLMDKLAPFFRPE FLNRFNGIVEFSHLTKQDLSQIVELMLADVQKTLAKKSIKLEVTKAAKDWLMEQGYDEAM GARPLRRVIEQQIRDKVTDFYLDHLDVKNLKADLVDDEIVISAA >gi|307679034|gb|GL456763.1| GENE 15 14449 - 14934 403 161 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 161 1 161 391 182 55.0 3e-46 MNELTTEIIATLVQKQDLDEVFRHHLEIAINQLLQTKLAAFLGYERYSYAGINTGNNRNG SYERSFDTKYGQLNLTIPRDRNGIFENHTLPAYGRHSDSLETTVIQLYTKGITTAEIAEL IEKMYGTHYSKSTVSNMTKAVDEQVQAFQQRRLASQYASVF Prediction of potential genes in microbial genomes Time: Tue Jul 5 18:24:19 2011 Seq name: gi|307679033|gb|GL456764.1| Enterococcus faecalis TX0312 genomic scaffold Scfld24, whole genome shotgun sequence Length of sequence - 30793 bp Number of predicted genes - 21, with homology - 21 Number of transcription units - 17, operones - 4 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 309 98 ## EF3250 hypothetical protein + Term 364 - 421 15.2 + Prom 555 - 614 7.4 2 2 Tu 1 . + CDS 658 - 5349 4350 ## EF3248 hypothetical protein + Term 5353 - 5410 14.7 - Term 5431 - 5468 1.0 3 3 Tu 1 . - CDS 5544 - 5687 166 ## EF3249 hypothetical protein - Prom 5736 - 5795 9.8 - Term 6066 - 6103 6.4 4 4 Tu 1 . - CDS 6175 - 6318 72 ## EF3247 hypothetical protein - Prom 6448 - 6507 8.0 - Term 6597 - 6637 11.2 5 5 Tu 1 . - CDS 6648 - 8264 1452 ## COG1316 Transcriptional regulator - Prom 8284 - 8343 2.9 + Prom 8758 - 8817 7.5 6 6 Tu 1 . + CDS 8957 - 9586 509 ## COG3397 Uncharacterized protein conserved in bacteria + Term 9737 - 9770 -0.9 - Term 9780 - 9825 14.1 7 7 Tu 1 . - CDS 9850 - 10842 901 ## COG0340 Biotin-(acetyl-CoA carboxylase) ligase - Prom 10949 - 11008 5.5 + Prom 10902 - 10961 4.6 8 8 Tu 1 . + CDS 10981 - 11196 295 ## COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain + Term 11204 - 11237 3.1 + Prom 11208 - 11267 12.9 9 9 Op 1 . + CDS 11372 - 11602 322 ## gi|307288305|ref|ZP_07568301.1| toxin-antitoxin system, antitoxin component, AbrB domain protein 10 9 Op 2 . + CDS 11602 - 11943 354 ## COG2337 Growth inhibitor + Prom 12195 - 12254 9.8 11 10 Op 1 58/0.000 + CDS 12314 - 15928 849 ## PROTEIN SUPPORTED gi|163796927|ref|ZP_02190884.1| 30S ribosomal protein S12 + Term 15965 - 16001 -0.1 12 10 Op 2 . + CDS 16095 - 19748 4019 ## COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit + Term 19753 - 19804 12.8 - Term 19739 - 19792 14.8 13 11 Tu 1 . - CDS 19797 - 20489 232 ## COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases - Prom 20559 - 20618 7.3 + Prom 20518 - 20577 7.4 14 12 Op 1 . + CDS 20598 - 22118 1761 ## COG1070 Sugar (pentulose and hexulose) kinases 15 12 Op 2 . + CDS 22202 - 22921 592 ## EF3234 putative lipoprotein + Prom 22938 - 22997 5.9 16 13 Tu 1 . + CDS 23049 - 23516 576 ## COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) + Term 23535 - 23570 4.0 + Prom 23545 - 23604 7.3 17 14 Op 1 59/0.000 + CDS 23636 - 24181 930 ## PROTEIN SUPPORTED gi|227517177|ref|ZP_03947226.1| ribosomal protein L13 18 14 Op 2 . + CDS 24195 - 24587 653 ## PROTEIN SUPPORTED gi|29377675|ref|NP_816829.1| 30S ribosomal protein S9 + Term 24717 - 24745 2.3 + Prom 24658 - 24717 5.9 19 15 Tu 1 . + CDS 24762 - 27743 2304 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily + Term 27768 - 27820 11.3 + Prom 27769 - 27828 5.4 20 16 Tu 1 . + CDS 27933 - 28493 372 ## gi|255970592|ref|ZP_05421178.1| predicted protein + Term 28508 - 28549 6.7 + Prom 29546 - 29605 10.1 21 17 Tu 1 . + CDS 29639 - 30791 723 ## COG3942 Surface antigen Predicted protein(s) >gi|307679033|gb|GL456764.1| GENE 1 1 - 309 98 102 aa, chain + ## HITS:1 COG:no KEGG:EF3250 NR:ns ## KEGG: EF3250 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 102 544 645 645 168 96.0 7e-41 PKSATDSLPTTTRLLLGTAAAASFTDYNQPTETKTPLGKTGTVNLTADNTATAVVANQQF TGSDVYQLDFTFANIKLEVPANQGMVGQQYQAAVTWNLVTGP >gi|307679033|gb|GL456764.1| GENE 2 658 - 5349 4350 1563 aa, chain + ## HITS:1 COG:no KEGG:EF3248 NR:ns ## KEGG: EF3248 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 979 1 950 1252 954 56.0 0 MNQKWQKLLTTALCCSLLISSLNGISVLAETIVVENETTTETGETTASEDTATSDSSLNA SQENETANTVASSETTTEPETSELPQKMIEEPQLPSAEDQTEATADTTTAAVEATQEEPT KRENRAVKTADIPEKTYKMAFIDENGLFIDPAKVTFTADVTKVERKSGTQTKVGTITTSN LGNFKMLTVPKVTLPDDDATEDYGFSGLTNHKITLPGQYTAPKTTPNNFYKGPDTTTFPL AVSRQVTIATGKDYSTYTTGERFNMFTTSTPKQFNLRTYSWVPDPQKVQFSAAYNMATTA GENNYLITDDTIYYYVPNRRVSIYYNDMTSTVLPTYPTGYNAALSKTVVESDNFHYKAPK AFPKTYSSGNRHFQFKGWYKGSARPDPKAVKLETTLTPEFDVTYDGKDNVYVFYEELEEK TTTIPEITYSFGFVDEKGALIAPANFGMQTNLTSIMNGIAKQVGTATGVNSGNLKKLTIP SQQLTYTKTINPAFYGSTNFRLTIPKQYKPPTVTPGPHYTGSSTAYPVATKRMRFVDSTI ADIRVETDGKYYSLYPTTTANQYRLYYTSWIEDTTKTRFDSILTSTNTEVSVPNYYTTDD TMYYFLENRRITENFVDENGTKITAPTGFTQGKQTVIDSDTYHFKLAQELPYSYYANDKA YRFKGWYKGKTQPQNLQTTRVPEYDASYDDNDDLTIIYEEIKYGGNTVQFGFVGESGQLL NPADFKVTTEVVQIIDGVSTVLDNISATDQTGNLKAMTIPQKQYTLTNSSNFYGTRNSFI EIPKYYKNLSFQKPSGYQGQEYPLAGRVERTFAGNPYTEGANPVYFTVTKSQNQRYKLRE IYWDDNPENLFSSLYKTTLIRNDNSLAGVEMFPESTLYYYLVNRRVTENFVDASGTKITP PTGFTQGKQTIIDKDNFTFTQAGTLPFMYKVNNRPYVLKGWYKGKEKPDKLNEITRTNRN ISYPVTYDDQDDITIVYDEFKTEDKTINFGFINETGDYVAPSNFNIRTDMSQVVGGLQSK LQTITALPTGDFLQLKLPAVNIVGSFTSDEELYGTRNSIVTIPKYYKTPTITPSSKYNGP NYSGVTGIIAYHNTKNSAEFTENRLQVTPISGSQTDYRFPEVGWQGEPTRTTFSSLYKMD YNSTVSGVTAHTEIYATGTVNYYLENRRITENFVDENGTKITAPTGFTQGNQLVMNSETY KYTAAKALPKTYQVGEKTYVFKGWYKGKETTTPLKTTTTPSFTPTFDENDDMTAVYQEAV PTAELTVKGSADIVENGATMDHWEVLLKNTGEAPLTTIKIKPTATWAAGISPPNTIFVLG TGQNAKAYPVTKEQWAAGFSLPLNTPLPAGGQLQMNLLGTAVTGNPGQVLTAEVEVTGNF GSLIAKDTVRIKDLDQEITNPDGDGFISTPTFDFGKLAISGSKQQYGLKKAADYYDNGTR NPYLRLNTSQDNWSLTAQLSQPKSATDSLPTTTRLLLGTAAAASFTDYNQPTETKTPLGK TGTVNLTADNTATAVVANQQFTGSDVYQLDFTFANIKLEVPANQGMSGQQYQAAVTWNLV TGP >gi|307679033|gb|GL456764.1| GENE 3 5544 - 5687 166 47 aa, chain - ## HITS:1 COG:no KEGG:EF3249 NR:ns ## KEGG: EF3249 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 47 1 47 47 69 91.0 5e-11 MNVSTKIYERRGLLSIAEALALMISFGSFIATLIFGILEAVKENNKK >gi|307679033|gb|GL456764.1| GENE 4 6175 - 6318 72 47 aa, chain - ## HITS:1 COG:no KEGG:EF3247 NR:ns ## KEGG: EF3247 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 47 19 65 65 70 89.0 2e-11 MNVSTKIYERRGLLSAYETIQTILGFGMFTIALIALIVKLLKNDKKK >gi|307679033|gb|GL456764.1| GENE 5 6648 - 8264 1452 538 aa, chain - ## HITS:1 COG:BH3670 KEGG:ns NR:ns ## COG: BH3670 COG1316 # Protein_GI_number: 15616232 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 237 530 10 304 304 207 41.0 6e-53 MQTSNKKFPLYALTTLGFTFLTLLVAASPNWFQQMDEAIYHIKWQLNAPLLTAVNLLAKT ATIGPMLLFFLLLMVYLLRKKEKILAFWAVSNLLAVGFLGSVFKHVVGRARPNLGALADR SSASFPSGHSLLAMALVCTILIILAYLHVEKTKGIKIFLLTYLVLIVLGRLILRVHYPSD VIAGMLLSYSWINFSFQIVQRYLPAPEPEDAEVPTQRRRRHSRKRKSLFVVFSLTLLFLG TLSVSAYGVSMYRNLQKTANTMYKPRKSSTKSPDLAKGEPVSFLIMGIANDSKRKTDYRS NALMVVTVNNQLQKTTITSIPRDYYVEMAGTNGEYNKINAAHVFGGADMQIKTVENVLHI PINHYFSIDMDAMKDLGDAVGGVTVDNAFAFDAEGIHYPKGKQHLGGWEALQYARMRYED PEGDYGRQRRQREVLIELTNKLLSFNSLLKYQEILDVIGEHGETDLSFDQMMAMLKKYTP ALKTIETDQLKGYDYTGDGVTGIEGISYQLVEESERQRVENAIKEQMNLSTKDTEQSQ >gi|307679033|gb|GL456764.1| GENE 6 8957 - 9586 509 209 aa, chain + ## HITS:1 COG:L11456 KEGG:ns NR:ns ## COG: L11456 COG3397 # Protein_GI_number: 15673933 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 6 208 8 206 220 149 41.0 4e-36 MMLFIIAVGATMISVFALGDAQQSYAHGYVDSPVSRVKNAEANGFGWGPGQDSSQPEIIT TPQGIEAPTKLLDTGQLNGRLPSAGLASYSKLDEQTATRWVKSNITTGENNFKWVMTAKH KTNRFRYYMTKPGWNPNAPLTMDEMELIGIVGQPIGQDLPPGQGFMVNDTETHRINIPAD RKGYHVIYAVWDINDTINSFYQAIDVNVQ >gi|307679033|gb|GL456764.1| GENE 7 9850 - 10842 901 330 aa, chain - ## HITS:1 COG:SPy1362_2 KEGG:ns NR:ns ## COG: SPy1362_2 COG0340 # Protein_GI_number: 15675294 # Func_class: H Coenzyme transport and metabolism # Function: Biotin-(acetyl-CoA carboxylase) ligase # Organism: Streptococcus pyogenes M1 GAS # 81 321 2 235 240 198 44.0 1e-50 MSTKSQVLTLLMKQTPAFLSGEEMAQRLSLSRTAIWKAINELKKDGYQITSVQNKGYRLE KSDVLSAEGIQLALWPQTPPLTITVLETSESTMTDAKRAILDQTPDNTLIVADMQEMPRG RFGRPFFATPGKGIYMSMVLQPNQNFEEIAQYTVIMAVAVARAMDALAGVHTEIKWVNDL YLNGKKVCGILSEAMSNVETGQISNVIIGMGINFSITETEFPEDIRQKVTSLFPDGEPTA TRNELVANIWNHFYQILDKRSTKDFLEEYRQRSFVIGKDVAFTQNGQDFRGVATTINGNG ELIVQLPDGTAKTLSSGEISLDQIGEWRRG >gi|307679033|gb|GL456764.1| GENE 8 10981 - 11196 295 71 aa, chain + ## HITS:1 COG:L121994 KEGG:ns NR:ns ## COG: L121994 COG3478 # Protein_GI_number: 15672697 # Func_class: R General function prediction only # Function: Predicted nucleic-acid-binding protein containing a Zn-ribbon domain # Organism: Lactococcus lactis # 3 70 5 72 72 99 76.0 1e-21 MEKQQYVCEKCGNMHYVSDQFQATGGNFAKIFDVQNKKFITISCTQCGYTELYRSQTSGG MNVLDFLLGGG >gi|307679033|gb|GL456764.1| GENE 9 11372 - 11602 322 76 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307288305|ref|ZP_07568301.1| ## NR: gi|307288305|ref|ZP_07568301.1| toxin-antitoxin system, antitoxin component, AbrB domain protein [Enterococcus faecalis TX0109] toxin-antitoxin system, antitoxin component, AbrB domain protein [Enterococcus faecalis TX0109] toxin-antitoxin system, antitoxin component, AbrB domain protein [Enterococcus faecalis TX1302] # 1 76 44 119 119 150 98.0 3e-35 MLTTKSRRQGSSVVLTLPTDNGKKPKVDQEYIVMYSDDGTITLVPKIQDPFSEGPEGEYY EKDEWHDLAPEGRELF >gi|307679033|gb|GL456764.1| GENE 10 11602 - 11943 354 113 aa, chain + ## HITS:1 COG:DR0417 KEGG:ns NR:ns ## COG: DR0417 COG2337 # Protein_GI_number: 15805444 # Func_class: T Signal transduction mechanisms # Function: Growth inhibitor # Organism: Deinococcus radiodurans # 7 105 5 103 117 76 36.0 1e-14 MNVEKKYIPKKGDIVWIDFDPAAGKEIQKRRPGLVVSRYEFNRKTMFAVICPITSTIKNI PTRYTLPDDIETQGQVVISQLKSLDFTERKLSQIEHLPLKDMAKIDQIIEYIF >gi|307679033|gb|GL456764.1| GENE 11 12314 - 15928 849 1204 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163796927|ref|ZP_02190884.1| 30S ribosomal protein S12 [alpha proteobacterium BAL199] # 725 1140 906 1387 1392 331 43 3e-90 MAGHVVKYGKHRERRSFARISEVLELPNLIEIQTDSYQWFLDEGLREMFEDILPIDDFQG NLSLEFVDYELKEPKYTVEEARAHDANYSAPLHVTLRLTNRETGEIKSQEVFFGDFPLMT EMGTFIINGAERVIVSQLVHSPGVYFHGKVDKNGKEGFGSTVIPNRGAWLEMETDAKDIS YVRIDRTRKIPLTVLVRALGFGSDDTIFEIFGDSESLRNTIEKDLHKNASDSRTEEGLKD IYERLRPGEPKTADSSRSLLTARFFDPKRYDLANVGRYKVNKKLDLKTRLLNLTLAETLV DPETGEIIVEKGTVLTHQIMETLGEYIDNGLNSVTYYPSEDAVVTEPMTIQVIQVLSPKD PERIVNVIGNGYPDDSVKTVRPADIVASMSYFFNLMEDIGNVDDIDHLGNRRIRSVGELL QNQFRIGLARMERVVRERMSIQDTETLTPQQLINIRPVVASIKEFFGSSQLSQFMDQTNP LGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYAK VNKFGFIETPYRRVDRATGRVTDQVDYLTADIEDHYIVAQANSLLNEDGTFANDVVMARL QSENLEVAVDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIQPRSP WVGTGMEYKSAHDSGAALLCKHDGVVEFVDAKEIRVRRDNGALDKYMVTKFRRSNSGTSY NQRPIVHLGEKVEKGDTLADGPSMEEGEMALGQNVLVAFMTWEGYNYEDAIIMSRRLVKD DVYTSVHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVQDGDLLVG KVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTREAGDELSPG VNMLVRVYIVQKRKIHEGDKMAGRHGNKGVVSRIMPEEDMPFLPDGTPVDIMLNPLGVPS RMNIGQVLELHLGMAARQLGIHVATPVFDGATDEDVWETVREAGMASDAKTVLYDGRTGE PFDNRISVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALE AYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQSLGLDMRV LDIEEAEIELRDMDDDDDDLITVDALTKFAEQQSAKQLEKEAESVVKEEAQDVVQEIETA EDRD >gi|307679033|gb|GL456764.1| GENE 12 16095 - 19748 4019 1217 aa, chain + ## HITS:1 COG:lin0286 KEGG:ns NR:ns ## COG: lin0286 COG0086 # Protein_GI_number: 16799363 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta' subunit/160 kD subunit # Organism: Listeria innocua # 1 1202 1 1201 1201 1932 79.0 0 MIDVNKFESMQIGLASPEKIRSWSYGEVKKPETINYRTLKPEREGLFCERIFGPTKDWEC ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM SPRALEEVIYFASYVVIEPGDTTLEKKQLLTEREYREKREQYGQAFKAAMGAEAVKQLLD NVDLDGEVAQLKEELKTASGQKRTRAIRRLDILEAFRASGNQPSWMVMDVIPVIPPDLRP MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPSIIVQNEKRMLQEAVDALIDNGR RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPFLKMYQCGLPKE MAIELFKPFVMRELVQREIATNIKNAKRKIERGEDEVWDILEEVIQEHPVLLNRAPTLHR LGIQAFEPVLVEGRAIRLHPLVCEAYNADFDGDQMAVHVPLNEEAQAEARMLMLAAQNIL NPKDGKPVVTPSQDMVLGNYYLTMEEEGREGEGMIFRDMNEAVLAWQNGYVHLHSRIGVQ TTLLGDKPFTDWQKERILITTVGKIIFNEIMPVEFPYLNEPTDYNLTVQTPDKYFVEAGT DIPAHIKEQELVLPFKKKNLGNIIAEVFKRFHITETSKMLDRMKDLGYKHSTYAGMTVGI ADIMVLHEKQAIIDAAHKQVETITKQFRRGLITDDERYERVIGVWNGAKDEIQQKLIESM EARNPIFMMSDSGARGNISNFTQLAGMRGLMAAPNGRIMELPIISNFREGLSVLEMFIST HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLEIEAIREGNEIIEPLD ERLLGRYTRKSVVHPETGAIIIGADQLITEDLAREIVDAGIEKVTIRSVFTCNTKHGVCK HCYGRNLATGSDVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF EARNPKGQAVITEVTGEVIDISEDPATRQKEVTIKGKTDTRTYTVPYTARMKVAEGDIIH RGAPLTEGSIDPKQLLQVRDVLSVENYLLREVQRVYRMQGVEIGDKHIEVMVRQMLRKIR VMDPGDTEILPGTLMDIAEFKDRNYDTLVAGGVPATSRPVLLGITKASLETNSFLSAASF QETTRVLTDAAIRGKKDPLLGLKENVIIGKIIPAGTGMARYRNMEPKEVGVASENVYSIS DIEAQMAAEDAMKNINK >gi|307679033|gb|GL456764.1| GENE 13 19797 - 20489 232 230 aa, chain - ## HITS:1 COG:aq_1601 KEGG:ns NR:ns ## COG: aq_1601 COG1989 # Protein_GI_number: 15606720 # Func_class: N Cell motility; O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, prepilin signal peptidase PulO and related peptidases # Organism: Aquifex aeolicus # 3 223 7 236 254 92 30.0 6e-19 MFFLSLFLIGACFGSFLCLVAERLPVGRSLWWPPSHCQGCHQPLHLYELIPVVSILLQRF RCRKCQQPVAKSYLLAELVMGGLTASCFFAGLTIDALILWWWLTSAFILSLIDYWYLVVE PKILYPSFFVLCLLKIAGQHSFYLLTGLFCFCFFRAVLHYFPEAMGRGDLLLLGLWGCFL QVPQLLMLLFFASSYGLIYGYSCKFLGYPVEQTLPFVPFLSLGLLTISCL >gi|307679033|gb|GL456764.1| GENE 14 20598 - 22118 1761 506 aa, chain + ## HITS:1 COG:BS_gntK KEGG:ns NR:ns ## COG: BS_gntK COG1070 # Protein_GI_number: 16081058 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Bacillus subtilis # 1 506 1 507 513 412 40.0 1e-115 MEKLAIGVDVGTTQAKAVAFQANGTVVASSYVRYPLIQETEGMAEQDPETLFQAVVNCIR TVTQQVKNQPIGLISFASAMHGLIAMDAQGRPLTQVITWADTRASDYAEALKETPAAQLF YQLTGMPVHPMAPLYKIRWLQENQPAVAQSAAKFIGIKDYIFYRFFGEYWTDYSSASGMG LFNIHTRQWESSILAYLSIEEEQLPKVAPSTFIFPALAPSWKEMLGVEEETVLVLGGADG PLSNLGLGALGMGVATLTVGTSGALRYIVEEPFLHPQGETFCFALDEQHWVIGGASSNGA VALDWASQTIFAEERQQAIQNGTNLYDPIMAQIATVPAGANGLLFHPYLLGERAPLWNAE ASASFIGLRKNHHAGHLARAVVEGICFNLKTILEDLKQLGGPVQEIRATGGFADSPVFRQ IMADVLGETLSFTDSTEASALGAVLLGWQGLGQLPNLQAAAQQVLIHETVTPRADQLLVY QELYPVFQETQQVLAQSYQKLAEFRK >gi|307679033|gb|GL456764.1| GENE 15 22202 - 22921 592 239 aa, chain + ## HITS:1 COG:no KEGG:EF3234 NR:ns ## KEGG: EF3234 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 239 1 239 239 333 96.0 4e-90 MKKQLLPLFLLFIGALASCSAPSRSGEKAAQQLVDYFIYQEKTATFSQTFREPKVLAEHL QTSRQQFQKQFFNSLKEMNDEVTETEAQKLSTELLAQVKKKASYQLVATKELNGQATITF QIKGLDFVTAIEDTTTALLQQTQQATQALDMQHTLAVLKKEIQQINVSHEPVELPLTVKQ VEGQWYLPAAEQLRLNQFFLAFVTGKEDTDQLTEALDTILTQAEQKVVTADEKTAISGN >gi|307679033|gb|GL456764.1| GENE 16 23049 - 23516 576 155 aa, chain + ## HITS:1 COG:SPy1531 KEGG:ns NR:ns ## COG: SPy1531 COG0783 # Protein_GI_number: 15675430 # Func_class: P Inorganic ion transport and metabolism # Function: DNA-binding ferritin-like protein (oxidative damage protectant) # Organism: Streptococcus pyogenes M1 GAS # 2 153 24 175 175 174 51.0 8e-44 MKFEKTKEILNQLVADLSQFSVVIHQTHWYMRGPEFLTLHPQMDEYMDQINEQLDVVSER LITLDGSPFSTLREFAENTKIEDEIGNWDRTIPERMEKLVAGYRYLADLYAKGIEVSGEE GDDCTQDIFIANKTDIEKNIWMLQAKLGKAPGIDA >gi|307679033|gb|GL456764.1| GENE 17 23636 - 24181 930 181 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227517177|ref|ZP_03947226.1| ribosomal protein L13 [Enterococcus faecalis TX0104] # 1 181 1 181 181 362 99 1e-99 MIEGKILNGIVCPTMSPGNSSVCQTSKTKLEERNVRTTYMAKAGEVERKWYVVDATDVPL GRLSAVVASVLRGKNKPTFTPHVDTGDFVIVINADKVKLTGKKATDKIYYRHSMYPGGLK SVTAGELRDKNSRRLIETSVKGMLPKNTLGRKQFTKLNVYGGAEHPHAAQQPEVLDITNL I >gi|307679033|gb|GL456764.1| GENE 18 24195 - 24587 653 130 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29377675|ref|NP_816829.1| 30S ribosomal protein S9 [Enterococcus faecalis V583] # 1 130 1 130 130 256 99 2e-67 MAQVQYSGTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLREVINQPFGVTETKGA YDVIVNVNGGGYAGQSGAIRHGIARALLQVDPDFRSALKRAGLLTRDARMVERKKPGLKK ARKASQFSKR >gi|307679033|gb|GL456764.1| GENE 19 24762 - 27743 2304 993 aa, chain + ## HITS:1 COG:SPy0793 KEGG:ns NR:ns ## COG: SPy0793 COG1368 # Protein_GI_number: 15674836 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Streptococcus pyogenes M1 GAS # 262 983 148 812 824 269 28.0 2e-71 MIESKKYPIVTPIMACIFIIVQRVLFSGTAIPQYDQNGTRFYLYSVALGLVAVGGNLLAL YMGYHGKKAVGTKPLAKFANFYLLYVFGTLVLNLSLASFSLNIRDYWTILFPISQNIFPF ATAYLLLFLLSPYLYEYLDRLKNEQIKWTMSLLTFFLIALPTFFGKDIWGMASGNSILLL IYFYLVGYAIYRFNFLPRYHLKFIQVTFGIVILASLVLLMTHISLFLNKGTSTATRFNVP WSLFSVYYSISLFIFLENVNKRFSLLRLNFNVLSTSLLVVQILVNWPIVTRLVSEKFVQT EVKSGTVWAKQIIYLTIAYLIVALLSSCVVLLLQKIPLYRKIEQNLRVENFSQLKLKLSK LWNWVCAYRRLFYSALFFYLFTIMQLLLIADYGSKDIALRSIFTIFIYRQAQVFLNVIVI MAFLMLVILLINRFWYAFAFTLVINLVLTIATVLKIKYRLEPILPADFAFLNSISEILDM LNPVILIISVIGLVLVGIYSWILQKRLERTYHLKINIKKRVLGIVSILVFFSGVFFVNHQ NSLPNLVFKLFRIDSQFYNQRRGTQINGPVIQFLSNIDVKIMEEPSGYSQENIKKIMAKY DAEAKKINSERQDWQKEQTVIFTLSESFSDPSRLKDITLNNNPFPFITQLSKETTSGLML SSGYGGGTANMEWQSLTGMDLSNLGATLPVPYTQLVNKQKKTPTFLNLFDEAVAIHPFSA NTYSRLNVFEKFGFDKFHYIGSPDGLNYTQKIEANPYISDEAAYQETVDAINATEGKTQF IQLSTMQNHMPYNNYYKEDTFDFEGAGVSESNRNQMKTYLQGLNYTDQATQKFIEEIDKI EKPITIVWYGDHLPGIYKEQDLAKYPLLYRETDYFVYNNKYAQQQRKLPNYSLVSPYMFS SLALEQANIKVTPFYALLTAVTNNLPATTIDPNSGSQNVQNGKKVFASDQNKTTEEKDLT KEQKELLHDYELIQYDLVAGKQYSADWAEKKVN >gi|307679033|gb|GL456764.1| GENE 20 27933 - 28493 372 186 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|255970592|ref|ZP_05421178.1| ## NR: gi|255970592|ref|ZP_05421178.1| predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis T2] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] hypothetical protein CUI_2548 [Enterococcus faecalis PC1.1] hypothetical protein HMPREF9498_00007 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9521_02173 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9515_02526 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9505_01685 [Enterococcus faecalis TX0109] hypothetical protein HMPREF9510_02745 [Enterococcus faecalis TX0470] hypothetical protein HMPREF9504_02883 [Enterococcus faecalis TX0102] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis T2] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] hypothetical protein CUI_2548 [Enterococcus faecalis PC1.1] hypothetical protein HMPREF9505_01685 [Enterococcus faecalis TX0109] hypothetical protein HMPREF9515_02526 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9521_02173 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9498_00007 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9504_02883 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9510_02745 [Enterococcus faecalis TX0470] hypothetical protein HMPREF9501_03129 [Enterococcus faecalis TX0027] hypothetical protein HMPREF9497_02674 [Enterococcus faecalis TX4244] hypothetical protein HMPREF9502_01913 [Enterococcus faecalis TX0031] hypothetical protein HMPREF9508_00553 [Enterococcus faecalis TX0312] hypothetical protein HMPREF9516_02789 [Enterococcus faecalis TX1302] hypothetical protein EF62_0286 [Enterococcus faecalis 62] hypothetical protein OG1RF_12484 [Enterococcus faecalis OG1RF] # 1 186 1 186 186 377 100.0 1e-103 MSSVVCQSCGANAFRWYDTADQVVECKYCHSKQAFIKGMGVESAIKVVGGKEEAETDSEY QERIIHQFGLKDQVIEVKNYSLIDIPLTFIVWLYLDILLGALFICGGFLSKNYRAWYANL LRWHFYGWRYTKSATEKEKASQRIRGSLLIKWLLQEDPDKTKKLIMVGVSILFTVLFVYT TGNGAA >gi|307679033|gb|GL456764.1| GENE 21 29639 - 30791 723 384 aa, chain + ## HITS:1 COG:SP2201_1 KEGG:ns NR:ns ## COG: SP2201_1 COG3942 # Protein_GI_number: 15902008 # Func_class: R General function prediction only # Function: Surface antigen # Organism: Streptococcus pneumoniae TIGR4 # 35 243 51 250 250 118 39.0 2e-26 MRKNKKIWAFLGILLVVMSFSFKSGVVNAEDKVIGDDYPAKWKNLPLGATTDDWGMATRY CTSFVANRLSVENKFDIRRDGLDWNANQWGNNARRQGYKVDMIPRRGSVAYWNSMYHVAW VAAVDGDRVLIEEYNYGYTGRYNSRWISKNSVDGYIHFKDISSSPEKQAINKYITITKDG QDFFENIECTTKKAKTVRGRIYYVKIAYKLSNGQLLYSVYEDEKGTAWIGYLRQGSSEFT QLETFNRKKVSLTNNATTLWKDLNYQGKLGMSVAGNAYTVNRVFYNSTNNASYYELYRGN TFCGYVNSGAVKDITTQTVNKYSTITEANQDIFGNIELTSTKGKTERGRIYYTTIGYNLG DGSVLYSLYKDETAAEWVGYVKEN Prediction of potential genes in microbial genomes Time: Tue Jul 5 18:25:27 2011 Seq name: gi|307679032|gb|GL456765.1| Enterococcus faecalis TX0312 genomic scaffold Scfld25, whole genome shotgun sequence Length of sequence - 68272 bp Number of predicted genes - 69, with homology - 69 Number of transcription units - 34, operones - 21 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 61 - 309 437 ## COG2261 Predicted membrane protein - Prom 354 - 413 6.1 - Term 434 - 482 5.1 2 2 Op 1 . - CDS 489 - 3566 3334 ## COG3250 Beta-galactosidase/beta-glucuronidase 3 2 Op 2 . - CDS 3544 - 5043 1613 ## COG0531 Amino acid transporters - Prom 5079 - 5138 8.7 + Prom 5063 - 5122 5.9 4 3 Op 1 . + CDS 5192 - 6022 702 ## COG2207 AraC-type DNA-binding domain-containing proteins + Term 6094 - 6160 -0.4 + Prom 6106 - 6165 7.6 5 3 Op 2 . + CDS 6217 - 7719 897 ## BBPR_0060 hypothetical protein + Term 7749 - 7791 8.8 - Term 7781 - 7819 7.0 6 4 Op 1 47/0.000 - CDS 7842 - 8210 571 ## PROTEIN SUPPORTED gi|29377194|ref|NP_816348.1| ribosomal protein L7/L12 7 4 Op 2 43/0.000 - CDS 8273 - 8773 787 ## PROTEIN SUPPORTED gi|29377195|ref|NP_816349.1| 50S ribosomal protein L10 - Term 9020 - 9065 10.0 8 5 Op 1 55/0.000 - CDS 9096 - 9785 1156 ## PROTEIN SUPPORTED gi|29377196|ref|NP_816350.1| 50S ribosomal protein L1 - Prom 9809 - 9868 2.7 9 5 Op 2 . - CDS 9897 - 10319 679 ## PROTEIN SUPPORTED gi|29377197|ref|NP_816351.1| ribosomal protein L11 10 6 Tu 1 . - CDS 10442 - 11938 1577 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 12148 - 12207 5.2 + Prom 12020 - 12079 4.4 11 7 Op 1 9/0.000 + CDS 12281 - 12982 744 ## COG1760 L-serine deaminase 12 7 Op 2 . + CDS 13005 - 13877 1063 ## COG1760 L-serine deaminase + Term 13893 - 13951 4.2 - Term 13881 - 13937 11.0 13 8 Op 1 . - CDS 13943 - 14527 571 ## COG2362 D-aminopeptidase 14 8 Op 2 . - CDS 14545 - 14790 318 ## EF2723 hypothetical protein 15 8 Op 3 . - CDS 14787 - 15890 1038 ## COG1363 Cellulase M and related proteins 16 8 Op 4 . - CDS 15904 - 17532 1659 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 17771 - 17830 5.6 + Prom 17527 - 17586 15.7 17 9 Tu 1 . + CDS 17610 - 18332 447 ## EF2727 phosphosugar-binding transcriptional regulator, putative + Term 18378 - 18441 21.1 - Term 18374 - 18418 12.4 18 10 Op 1 . - CDS 18425 - 19303 813 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold - Term 19325 - 19376 8.2 19 10 Op 2 . - CDS 19423 - 19968 817 ## COG0250 Transcription antiterminator - Prom 19989 - 20048 7.4 - Term 20007 - 20047 1.1 20 11 Op 1 . - CDS 20093 - 20263 307 ## EF2730 preprotein translocase, SecE subunit 21 11 Op 2 . - CDS 20284 - 20436 267 ## PROTEIN SUPPORTED gi|29377208|ref|NP_816362.1| ribosomal protein L33 - Prom 20583 - 20642 6.1 + Prom 20610 - 20669 7.3 22 12 Tu 1 . + CDS 20722 - 21360 750 ## COG0517 FOG: CBS domain + Term 21401 - 21464 13.2 - Term 21388 - 21451 13.2 23 13 Tu 1 . - CDS 21508 - 22584 354 ## EF2794 hypothetical protein - Prom 22683 - 22742 5.1 - Term 23088 - 23133 1.0 24 14 Op 1 . - CDS 23170 - 24072 1339 ## COG0812 UDP-N-acetylmuramate dehydrogenase 25 14 Op 2 . - CDS 24144 - 25058 980 ## COG0673 Predicted dehydrogenases and related proteins + Prom 25125 - 25184 7.8 26 15 Op 1 . + CDS 25265 - 26020 807 ## COG0708 Exonuclease III 27 15 Op 2 . + CDS 26055 - 26588 605 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases + Term 26608 - 26667 12.6 + Prom 26630 - 26689 3.2 28 16 Tu 1 . + CDS 26709 - 27299 302 ## gi|255971864|ref|ZP_05422450.1| predicted protein + Term 27317 - 27361 6.3 - Term 27304 - 27349 11.1 29 17 Op 1 2/0.111 - CDS 27399 - 29081 2102 ## COG0492 Thioredoxin reductase - Term 29104 - 29152 8.5 30 17 Op 2 . - CDS 29178 - 29741 747 ## COG0450 Peroxiredoxin - Prom 29766 - 29825 13.8 - Term 29907 - 29963 17.5 31 18 Tu 1 . - CDS 29982 - 30671 943 ## COG4122 Predicted O-methyltransferase - Prom 30691 - 30750 5.7 - Term 31244 - 31278 5.3 32 19 Op 1 2/0.111 - CDS 31287 - 32291 1115 ## COG0095 Lipoate-protein ligase A 33 19 Op 2 . - CDS 32324 - 33064 939 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III - Prom 33090 - 33149 3.0 - Term 33151 - 33205 8.3 34 20 Op 1 . - CDS 33210 - 34001 892 ## EF2743 hypothetical protein 35 20 Op 2 . - CDS 34022 - 35104 1533 ## COG1363 Cellulase M and related proteins - Prom 35131 - 35190 10.0 - Term 35197 - 35256 2.0 36 21 Op 1 6/0.000 - CDS 35317 - 36456 1205 ## COG3966 Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) - Prom 36493 - 36552 3.1 37 21 Op 2 7/0.000 - CDS 36591 - 36827 522 ## COG0236 Acyl carrier protein 38 21 Op 3 6/0.000 - CDS 36860 - 38065 1329 ## COG1696 Predicted membrane protein involved in D-alanine export 39 21 Op 4 . - CDS 38062 - 39582 1877 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins 40 21 Op 5 . - CDS 39597 - 39746 150 ## EF2750 hypothetical protein - Prom 39780 - 39839 11.1 - Term 39902 - 39945 9.4 41 22 Op 1 36/0.000 - CDS 39950 - 42046 1784 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 42 22 Op 2 . - CDS 42036 - 42803 290 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) - Prom 42829 - 42888 6.3 + Prom 43053 - 43112 10.5 43 23 Op 1 12/0.000 + CDS 43209 - 45392 1993 ## COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase 44 23 Op 2 . + CDS 45425 - 46021 601 ## COG0602 Organic radical activating enzymes + Term 46026 - 46084 14.2 45 24 Tu 1 . - CDS 46066 - 47184 1257 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair - Prom 47242 - 47301 2.2 - Term 47253 - 47302 7.3 46 25 Op 1 4/0.000 - CDS 47310 - 48068 691 ## COG0390 ABC-type uncharacterized transport system, permease component 47 25 Op 2 . - CDS 48052 - 48714 213 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 48 25 Op 3 2/0.111 - CDS 48729 - 49601 979 ## COG0313 Predicted methyltransferases - Prom 49644 - 49703 5.2 - Term 49627 - 49687 17.5 49 26 Op 1 5/0.000 - CDS 49714 - 50061 492 ## COG4467 Uncharacterized protein conserved in bacteria 50 26 Op 2 7/0.000 - CDS 50054 - 50893 1134 ## COG1774 Uncharacterized homolog of PSP1 51 26 Op 3 2/0.111 - CDS 51010 - 51960 820 ## COG0470 ATPase involved in DNA replication 52 26 Op 4 4/0.000 - CDS 51962 - 52291 500 ## COG3870 Uncharacterized protein conserved in bacteria 53 26 Op 5 1/0.222 - CDS 52311 - 52949 812 ## COG0125 Thymidylate kinase - Prom 52977 - 53036 4.5 54 27 Tu 1 . - CDS 53158 - 53754 563 ## COG0353 Recombinational DNA repair protein (RecF pathway) - Prom 53826 - 53885 4.4 - Term 53878 - 53921 5.2 55 28 Op 1 . - CDS 53930 - 54592 946 ## COG0819 Putative transcription activator 56 28 Op 2 . - CDS 54604 - 55257 470 ## EF2768 hypothetical protein 57 28 Op 3 4/0.000 - CDS 55248 - 56606 761 ## COG1122 ABC-type cobalt transport system, ATPase component 58 28 Op 4 . - CDS 56603 - 57166 687 ## COG4721 Predicted membrane protein - Prom 57371 - 57430 7.9 + Prom 57340 - 57399 7.8 59 29 Tu 1 . + CDS 57540 - 58325 822 ## EF2771 hypothetical protein + Term 58413 - 58465 10.0 + Prom 58381 - 58440 5.7 60 30 Tu 1 . + CDS 58489 - 59850 1265 ## COG0477 Permeases of the major facilitator superfamily + Term 59857 - 59901 7.2 - Term 59843 - 59887 2.1 61 31 Tu 1 . - CDS 59901 - 61091 1240 ## COG2814 Arabinose efflux permease - Prom 61121 - 61180 3.2 + Prom 61129 - 61188 8.5 62 32 Tu 1 . + CDS 61236 - 61592 438 ## COG1733 Predicted transcriptional regulators + Term 61643 - 61694 17.5 - Term 61633 - 61680 14.2 63 33 Op 1 11/0.000 - CDS 61686 - 62516 1099 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 64 33 Op 2 6/0.000 - CDS 62513 - 63148 604 ## COG0352 Thiamine monophosphate synthase 65 33 Op 3 1/0.222 - CDS 63145 - 63963 684 ## COG2145 Hydroxyethylthiazole kinase, sugar kinase family 66 33 Op 4 . - CDS 63947 - 64477 600 ## COG4732 Predicted membrane protein - Prom 64671 - 64730 2.8 - Term 64728 - 64789 17.4 67 34 Op 1 30/0.000 - CDS 64812 - 65126 619 ## COG0718 Uncharacterized protein conserved in bacteria 68 34 Op 2 . - CDS 65147 - 66907 2260 ## COG2812 DNA polymerase III, gamma/tau subunits 69 34 Op 3 . - CDS 66979 - 68193 1143 ## COG4468 Galactose-1-phosphate uridyltransferase Predicted protein(s) >gi|307679032|gb|GL456765.1| GENE 1 61 - 309 437 82 aa, chain - ## HITS:1 COG:L144047 KEGG:ns NR:ns ## COG: L144047 COG2261 # Protein_GI_number: 15673874 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 4 82 2 80 80 77 73.0 7e-15 MHTLWVLIVGAVIGAIAGALTSKGQSMGWIANIVAGLVGSFIGEKILGSWGPHVAGMAIV PSIIGAVILVAVVSFFFGRKNS >gi|307679032|gb|GL456765.1| GENE 2 489 - 3566 3334 1025 aa, chain - ## HITS:1 COG:ECs3958 KEGG:ns NR:ns ## COG: ECs3958 COG3250 # Protein_GI_number: 15833212 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Escherichia coli O157:H7 # 1 1015 13 1023 1042 739 38.0 0 MKTWENYKVDSINRLPGRAHFSSFPSKETALLNENKYTQAYKNLNGCWHFLFLEAPEYSP ENFFATDFDTSQMDQITVPGNWQVQGYGKMHYSDLWYNFPINPPYVPTENPTGIYKRTFA IDETFHDKKIILRFCGVDSAYHVWVNGHEVGYSKGARNEAEFDITSYAKIGETNDLTVRV YQWSDGTYLEDQDMWWLSGIFRDVELLGVPENGLEDFFIISDLDDSYQNGHLAITGKFWQ DKGQQVQLELMDQQGKTVLKETVAGNQGTVEFSASLPSVTAWSAEKPYLYQLFITVFSEG EVVEVIPQKVGFRNIHVSGETFLVNGVAIKLKGMNRHDYNPKNGRVVSREEIEKDIRLMK QFNINAIRTSHYPASAYFYDLCDEYGMYVIDETDLECHGFELTGEYDWISNDPEWETAYV SRMVRMIQRDKNHPSILFWSLGNESAFGHNFIEMARIAKEMDPTRLVHYEGDFEAEVTDV YSTMYTWLEHPTRELLMNTIIENSKKPHILCEYCHAMGNGPGNLKEYQELFYAHDKLQGG FIWEWFDHGIESVTDNGEVYYRYGGDFGDDPSNKDFCIDGMLMPDRTPSPSLYEYKKVIE PITTSAIDVLSGEFSLLSRFDFENLAIFNLVYTITEDQTVIQSGTVSVPAIAAREEGRLH LPYHLDFPKKAGAAYYLTLSYQLKETTAYASAGHELATAQFELPITTPGIEITPVGLLMA KEIGPHLYIEGPNFSINFDKVKGALTNVTRDGKKLLHKGPKFTFWRAPISNDMEIIDEMK KKYFLHLEHEIVRSFEWKKVDDFIQVIVKTINGTTNSAWHYQCTYQYLIAPNGEIFFDLK GSPAGKIENAPDMLPRLGVTLHLDKSLSEVKYFGKGPRENYVDSQEAGLLGVYEATVAEM FTNYVVPQANGNHMATKWSAFTDDRGQGVVATAADSYNFSVSYFEEQTLDVAKHTNELQE SEYVVLNIDYKQNALGSYSCGQWQLEKYRTTFEEFQLAFRLTPFNNKEIQAADVAHERVK RPTIS >gi|307679032|gb|GL456765.1| GENE 3 3544 - 5043 1613 499 aa, chain - ## HITS:1 COG:ECs3960 KEGG:ns NR:ns ## COG: ECs3960 COG0531 # Protein_GI_number: 15833214 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli O157:H7 # 1 478 1 457 477 338 41.0 2e-92 MATHSRERLGSVALMLMTFSAVFAFPSIVNNSIQIGLATIPGYLFGSIFYFLPFILMIAE FASANSENESGVHSWLESVLGPKWAFLGAWSYFFVNLFFFCSLLPNTLIYGSYAFLGQNV FQGNHSTKIIAVISILLFWLMTWVCIKGVSWISKVTSLAGGARLFMGVAFVVLAFVVVFG FGNEPAQEFTTTSIMPTFNWTFFMTMAWILQAVGGGESIGVYIKDVKGGNKTFVRTMIGA TIAVGIMYILGAVAVGLVVPTDVLKGNFSNGIFDIFKILGTYFHIPAAMMVRLVGIILFV GSLGSLALWTAAPVKVFFSEIPDGVFGKWLVKTNEEGNPTNALLVQGIIVTILVAIPALG IGNMDSFLETLINMTASTSLVPVLFLLIAYIGLRWRKETMPRSFRFGNRTFGLIAGIFLL AIFIFVFFMSTVPDPKLIMEEINGTLPKGTASPLGMLAYNIIGLIVFMGFAWICWKRYET KEKNEVGKGEMDYEDLGKL >gi|307679032|gb|GL456765.1| GENE 4 5192 - 6022 702 276 aa, chain + ## HITS:1 COG:BH2229 KEGG:ns NR:ns ## COG: BH2229 COG2207 # Protein_GI_number: 15614792 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Bacillus halodurans # 6 275 2 279 287 98 28.0 1e-20 MQNVFTNNVSILINDQPISQEFHLYEAGYEKCRPTKPTEFAPINYWVLHYCSDGEGYFST PFMEKQHITAGDLFMIPANCRNIYYPNRQNPWTYHWVGFVGDLSSQYLEKIGLTTENCIL KGTVDKKLESLFKNIYQEAKKHNHFGSLSESFQLLNYLEHHSVTQHENQSQQLFNQIKMA IHENFSNNLSISQLASEYNIDRSYLFKLFQRYEQTNPSIYVQNLKLQKACSLLRKSSLTI TEISFEAGFSSPSYFSKFFFQKKEMTPRQYRQQFLT >gi|307679032|gb|GL456765.1| GENE 5 6217 - 7719 897 500 aa, chain + ## HITS:1 COG:no KEGG:BBPR_0060 NR:ns ## KEGG: BBPR_0060 # Name: not_defined # Def: hypothetical protein # Organism: B.bifidum_PRL2010 # Pathway: not_defined # 3 498 32 539 539 122 23.0 4e-26 MKHFIKENKGLAIYSFFIVFATYGIKLFNNTYAIDTMHLMTNYRGYLKHWVSIGRPGLVA LKLLTYNYVNVYFLNLLAIIFFAIATILLCYYVDLSTKQIYNKKYLYIIPSIFPTSQLFS EQFYFVLQNFEFSLGICLVILSLIAIYHIPNKIFKLFGFLLLTFTLTMYQSFFVFACTLV LFKILMTLYFAQLNDLKISFKDYAFKIGHFILLAISSLVLSQLMAMLAKKVLNVESSYLD NMILWGKRPLIDSINDIKDYAKELFFPPVGDTFFTPLFLICVLLLVIVLINMSYLKRKNV FFIFITLLGILITPLMFTILGGKRPAIRGEVPNFPAVLALLLIFIMIYWGYNFVLKHLLV GIVILFTFIQVRETTNLEYSEYLTAEEDLRTAEMITNNIYSMEIENPESYKLLMYGNRSP RNVSNIKGETNGVSLFEFMPNSVHTSLNTLLYMKTFGLNFNDPTPEDFEKHKALQAEMNV WPSKDSIRVVDDCIVVNLSK >gi|307679032|gb|GL456765.1| GENE 6 7842 - 8210 571 122 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29377194|ref|NP_816348.1| ribosomal protein L7/L12 [Enterococcus faecalis V583] # 1 122 1 122 122 224 100 1e-57 MALNIENIVAELETATILELSELVKAIEEKFDVSAAAPVAVAGPAAGGAAEEQTEFTVEL TAAGDQKVKVIKAVREATGLGLKEAKAVVDGAPAPVKEAVSKEEAEALKAALEEVGASVT VK >gi|307679032|gb|GL456765.1| GENE 7 8273 - 8773 787 166 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29377195|ref|NP_816349.1| 50S ribosomal protein L10 [Enterococcus faecalis V583] # 1 166 1 166 166 307 100 9e-83 MSEAAIAKKETLVQAAAEKFESAASVVIVDYRGLTVEEVTNLRKQLRDAGVEMKVIKNSI LSRAAKKVGLDGLDEVFTGPTAVAFSNDDVVAPAKIIDEFAKDAKALEIKGGVIEGKVSS VEQITALAKLPNREGLLSMLLSVLQAPVRNVAYAVKAVAEKNEEVA >gi|307679032|gb|GL456765.1| GENE 8 9096 - 9785 1156 229 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29377196|ref|NP_816350.1| 50S ribosomal protein L1 [Enterococcus faecalis V583] # 1 229 1 229 229 449 100 1e-125 MAKKSKKMQEALKKVDATKAYSVEEAVALAKDTNIAKFDATVEVAYKLNVDPKKADQQIR GAVVLPNGTGKTQTVLVFAKGEKAKEAEAAGADFVGDDDMVAKIQGGWFDFDVVVATPDM MATVGKLGRVLGPKGLMPNPKTGTVTMDVTKAVEEVKAGKVTYRVDKAGNIHVPIGKVSF DNEKLVENFNTINDVLLKAKPSTAKGQYIKNISVTTTFGPGIHVDQASF >gi|307679032|gb|GL456765.1| GENE 9 9897 - 10319 679 140 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29377197|ref|NP_816351.1| ribosomal protein L11 [Enterococcus faecalis V583] # 1 140 1 140 140 266 99 3e-70 MAKKVEKIVKLQIPAGKATPAPPVGPALGQAGINIMGFTKEFNARTADQAGLIIPVVISV YEDRSFTFITKTPPAAVLLKKAAKIEKGSGEPNKTKVATVSSDQVKEIAELKMADLNAAD VEAAMRMVAGTARSMGIIVE >gi|307679032|gb|GL456765.1| GENE 10 10442 - 11938 1577 498 aa, chain - ## HITS:1 COG:L119564 KEGG:ns NR:ns ## COG: L119564 COG0488 # Protein_GI_number: 15672881 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Lactococcus lactis # 1 497 1 511 513 484 51.0 1e-136 MSKIELKQLSFAYDNQEALLFDQANITMDTNWKLGLIGRNGRGKTTLLRLLQKQLDYQGE ILHQVDFVYFPQTVAEEQQLTYYVLQEVTSFEQWKLERELTLLNVDPEVLWRPFSSLSGG EKTKVLLGLLFIEENAFPLIDEPTNHLDLAGRQQVAEYLKKKKHGFILVSHDRAFVDEVV DHILAIEKSQLTLYQGNFSIYEEQKKLRDAFELAENEKIKKEVNRLKETARKKAEWSMNR EGDKYGNAKEKGSGAIFDTGAIGARAARVMKRSKHIQQRAETQLAEKEKLLKDIEYIDSL SMDYQPTHHKTLLTVEELRLGYEKNWLFAPISFSINAGEIVGITGKNGSGKSSLIQYLLG DFSGDSEGEATLAHQLTISYVRQDYEDNQGTLSEFAEKNQLDYTQFLNNLRKLGMERAVF TNRIEQMSMGQRKKVEVAKSLSQSAELYIWDEPLNYLDVFNHQQLEALILSVRPAMLVIE HDAHFMKKITDKKIALKS >gi|307679032|gb|GL456765.1| GENE 11 12281 - 12982 744 233 aa, chain + ## HITS:1 COG:L43452 KEGG:ns NR:ns ## COG: L43452 COG1760 # Protein_GI_number: 15672812 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Lactococcus lactis # 12 233 1 223 223 291 61.0 1e-78 MKTYSNEEGAEMEELRFNSVFDIIGPVMIGPSSSHTAGAARIGKVVRSIFGQQPDSVDIY LYESFAKTYRGHGTDIALVGGLLGMEPDDEQLANSLEIAYEQGMEVCFIPKSEKADHPNS VKIVVSSGDRKLSVTGISIGGGNIQISELNGFKLSLSMGTPTFIVVHQDVPGMIAKVTNI LSASDINISTMTVTRESKGEKAIMIIEVDQAEVGDIVMQLAEIPHIYSVNYFD >gi|307679032|gb|GL456765.1| GENE 12 13005 - 13877 1063 290 aa, chain + ## HITS:1 COG:L44083 KEGG:ns NR:ns ## COG: L44083 COG1760 # Protein_GI_number: 15672813 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Lactococcus lactis # 1 286 1 286 287 330 65.0 2e-90 MFYSIKDLVAQAKDYPSVSELMIATEMAHGGYSRERIIETMEKNLAVMKQSVAEGIAGVT SVTGLTGGDATRLNDYIHSGNFLSGETILQAVRNAIAVNEVNAKMGLICATPTAGSAGVV SGVLLAVIDRLKLTHQQQLDFLFTAGAFGLVIANNASISGAEGGCQAEVGSASAMASAAL VAASGGTPDQSAQAVAITIKNMMGLICDPVAGLVEVPCVKRNALGSSQAFISADMALAGI RSVIPPDEVIHAMYQVGRQMPQIFKETAEGGLAVTPTAQRLSKEILEKQK >gi|307679032|gb|GL456765.1| GENE 13 13943 - 14527 571 194 aa, chain - ## HITS:1 COG:PH1582 KEGG:ns NR:ns ## COG: PH1582 COG2362 # Protein_GI_number: 14591360 # Func_class: E Amino acid transport and metabolism # Function: D-aminopeptidase # Organism: Pyrococcus horikoshii # 5 194 87 274 278 97 28.0 1e-20 MDYMMSGLDSSYDVVFFLGYHAGIGKQKGNMDHGYSASVAYDLKINDLAMNETTINAAYA SELGVPVGLIIGESGLEEQLFQEKMMPEVPFVSTKESLGRYAIKNRPMQQVREAIVATTS QVLTSFALSELPRYALQTPATVKLQCVTTAQADRIEMLPMIKRIDGRTVSFVGETMKDVM NGIVAVVGLGGTSY >gi|307679032|gb|GL456765.1| GENE 14 14545 - 14790 318 81 aa, chain - ## HITS:1 COG:no KEGG:EF2723 NR:ns ## KEGG: EF2723 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: ABC transporters [PATH:efa02010] # 1 71 1 71 281 150 100.0 2e-35 MKIYVSCDIEGLAGIATFDMEKEDTVLFRELYHQHVAWLIEGIQKSAKNEQITEITIADS HSRGLNLAYARAWQKWMNEFP >gi|307679032|gb|GL456765.1| GENE 15 14787 - 15890 1038 367 aa, chain - ## HITS:1 COG:BH3132 KEGG:ns NR:ns ## COG: BH3132 COG1363 # Protein_GI_number: 15615694 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Bacillus halodurans # 5 357 6 358 361 217 34.0 3e-56 MKKSQAVQLIQELSNANGVSGFETEVVRILQHATADFTIQRLDAIKNLYLEKKNNLSEGP VVLFDAHSDEVGFMIQAIKENGLLRFLPLGGWVPNTISAQKVRIRNREGTYLPGVVTSRP PHFMTPEERQRPLTIADLTIDIGATSKEEVIETYKIDLGAPVIPDVTCCYNEQTDLFLGK AFDCRIGCACLVDVMEELKEETLPFKLVATVTAQEEVGERGALIAAKQVNPDLAIVFEGC PADDTAETPEMIQSAMGKGPMLRYFDVSMITNPEFQEYALEIAKIHKIPVQVSVRSGGGT NGMAITQVQGAPTIVVGIPVRYAHTPHCYVDFQDYQAAKELVIQLIKNLDADKIQALVQP LSKEWNK >gi|307679032|gb|GL456765.1| GENE 16 15904 - 17532 1659 542 aa, chain - ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 30 533 41 550 559 366 39.0 1e-101 MKRATKQRLSLAAIMVLLLSGCGSVGKETKKQEQQVLRVGIDSELSTADVSLAMDNTAAD VMSQVGEGLFSFDEKGEAKPALATEKVQPSNDGLSYTFTIRKDAKWSNGEPITANDFEYS WKRTVDPKTASPQAYYFEGLKNYRAIVDGGKSKEELGVTAIDDHTLEVELSYPMSYFQQL LAVPAFYPLNEAFVEKTGKNYGTSAESILYNGAFTLEGWDGTNNTWSYVKNKNYWDQANV SLDKVDVQVVKEVNTGKNLFEGKELDVVTISGEIVTQEQGNAALKIREIPGTYYIQLNTQ KDLLANKNARRAIALSLNSERLAKNVLNDGSKKALGFVPTGFTNQETQKDFAEELGDLNP SEPEKAKELWQTAKKELGIEKAELTILSSDTENAKKISEYVQGALADNLENLTVNVSPVP FNNRLEKSRSGDFDIVVGGWTPVYADPIDFLNLLQSKNSNNFGKWSNKTFDQLLQEANVT YANKYEERWKTLQKADQLVAEEAPLVPLYQLTEARLVADSVQNLVYGPLGSGYYKSVSIS DK >gi|307679032|gb|GL456765.1| GENE 17 17610 - 18332 447 240 aa, chain + ## HITS:1 COG:no KEGG:EF2727 NR:ns ## KEGG: EF2727 # Name: not_defined # Def: phosphosugar-binding transcriptional regulator, putative # Organism: E.faecalis # Pathway: not_defined # 1 240 1 240 240 432 98.0 1e-120 MNLDYLKETYHLTKTESQILYYLDQQSTNAADLSIREVAKHCFSSPSSIIRLAKKLNLSG YNELIYKLKEAHFSQPIPFETAPSFETTNEFCQLLAKHKSHLFVILGHDFSRHLAAYISE VFNFHGIPSITTAHTHSINSQNNQNFLFIILSHSGEEKYLKETALLAKEKKHPIISFVGA KNSTLGRLADLVFSTDSYSPFSTSVAQPQMFFGQTLITFEALICAYLNHEDSIPISPKNK >gi|307679032|gb|GL456765.1| GENE 18 18425 - 19303 813 292 aa, chain - ## HITS:1 COG:lin0949 KEGG:ns NR:ns ## COG: lin0949 COG4814 # Protein_GI_number: 16800018 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Listeria innocua # 29 292 36 298 300 184 37.0 2e-46 MKHAQKYRYFSLLMGLVLLLSACQIGATTKNDNQAATKEATVELNRTTTPTLFFHGYAGT KNSFGSLLHRLEKQGATTQELVLLVKPDGTVVKERGALSGKATNPSVQVLFEDNKNNEWN QTEWIKNTLLYLQKNYQVNKANIVGHSMGGVSGLRYLGTYGQDASLPKIEKFVSIGAPFN DFIDTSQQQTIETELENGPTEKSSRYLDYQEMINVVPEKLPILLIGGQLSPTDLSDGTVP LSSALAVNALLRQRGTQVTSQIIKGENAQHSQLHENPEVDQLLIEFLWPSKK >gi|307679032|gb|GL456765.1| GENE 19 19423 - 19968 817 181 aa, chain - ## HITS:1 COG:BH0118 KEGG:ns NR:ns ## COG: BH0118 COG0250 # Protein_GI_number: 15612681 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Bacillus halodurans # 5 180 2 178 178 218 62.0 5e-57 METFERNWYVLHTYSGYENKVKANIESRAQSMGMGDYIFRVVVPEETEKEVKNGKEKEIV HKTFPGYVLVEMIMTDDSWYIVRNTPGVTGFVGSHGAGSKPAPLLQEEINHILRSIGMST RQSDLEVALGDTVKIIEGAFSGLEGVVTEIDEEKQKLKVNIDMFGRETSTELDFEQVDNI D >gi|307679032|gb|GL456765.1| GENE 20 20093 - 20263 307 56 aa, chain - ## HITS:1 COG:no KEGG:EF2730 NR:ns ## KEGG: EF2730 # Name: secE # Def: preprotein translocase, SecE subunit # Organism: E.faecalis # Pathway: Protein export [PATH:efa03060]; Bacterial secretion system [PATH:efa03070] # 1 56 1 56 56 87 100.0 1e-16 MKFFRSVADEMKQVTWPTKKQLRKDTLVVIETSILFAALFFIMDTVIQTAFGWILK >gi|307679032|gb|GL456765.1| GENE 21 20284 - 20436 267 50 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29377208|ref|NP_816362.1| ribosomal protein L33 [Enterococcus faecalis V583] # 1 50 1 50 50 107 100 2e-22 MATKKAALACSVCGSRNYSKSVSEGKRGERLEINKFCKYCNQYTLHKETK >gi|307679032|gb|GL456765.1| GENE 22 20722 - 21360 750 212 aa, chain + ## HITS:1 COG:lin0562 KEGG:ns NR:ns ## COG: lin0562 COG0517 # Protein_GI_number: 16799637 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Listeria innocua # 1 210 1 210 211 254 61.0 1e-67 MLLKSVVIKKDNLTTVNESCTLEEALSILEDSGYRCVPILDESGKIFRGNIYKMHIYRHK ANGGDMSLPVTYLLKNATKFIYVNTSFFKVFFTIKELPYIAVLDENNYFYGILTHSTLLN ILAQSWNVKQGSYVLTIASVGQQGDLAAISKIIAKYSSIASCITLDVDSEEFVRRTLITL PAGTTAETCTAIVEHLERKNFKVVELENLEDE >gi|307679032|gb|GL456765.1| GENE 23 21508 - 22584 354 358 aa, chain - ## HITS:1 COG:no KEGG:EF2794 NR:ns ## KEGG: EF2794 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 7 332 179 508 516 239 44.0 2e-61 MDIGFVILFKAAKYLFNKKVAYLTFYLASFSLMFSPWILVPYTDVIMIPVISAVLLLYAK QIEIKNSGVWNLIFIGILLGICYLLKPSSIVFLIAWTIIMGIKLLTTGKLYKKNVLSFFV AMFFFIITVGCFSIFQKQQTIVNYDAEMQKPWTHFVMMGLTGSGGYSEKDTRKVNSLPTL EKKKKYTTETIKKRLEDYGMVGYTKFLLVKHFNNTDRGDFGWGRDGTPQNPTKPSKSEFQ TKLRDTYYQQGKRTNNLRFVMQILWIVVLLGMLLSFFVKDIQGGTLLIIKLTIIGAFLYL LLFEGGRSRYLIQYLPFFYLLSANGLARINDIVSINGIKKSFTSTDYRGSLPIRTDEL >gi|307679032|gb|GL456765.1| GENE 24 23170 - 24072 1339 300 aa, chain - ## HITS:1 COG:lin1459 KEGG:ns NR:ns ## COG: lin1459 COG0812 # Protein_GI_number: 16800527 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Listeria innocua # 13 299 11 297 298 335 59.0 6e-92 MNTKAMLETLNEITLLVDEPLKNVTFTKTGGPADVLALPKTKKEVEEIVAYCREQGLSWL VLGNASNLIVRDGGIRDVVIMLTEMKEIKVAGTTMIVDAGAKLIDTTYEALAADLTGFEF ACGIPGSVGGAVYMNAGAYGGEIKDVFQSAEVLLADGTIQTMTKEDLNFRYRHSEIQELH CIVLQATFALEKGNHAEIKAQMDELTELRELKQPLEYPSCGSVFKRPVGHFTGKLIQDAG LQGLKWGGAQISEKHAGFIVNIDHATATDYVELIAHIQEVIKEKFDVELQTEVRIIGEEV >gi|307679032|gb|GL456765.1| GENE 25 24144 - 25058 980 304 aa, chain - ## HITS:1 COG:lin1972 KEGG:ns NR:ns ## COG: lin1972 COG0673 # Protein_GI_number: 16801038 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Listeria innocua # 1 298 2 298 301 191 36.0 1e-48 MKIGVIGLGNIAQKAYLPTYSECRHLAEFVLATRNPETRQKIADQYGFTETVGTIEELIE VKIDACFVHVATKVHGAVVRQLLQAGIHVFVDKPLSEDLAEVKELQALAAAKNLRLMVGF NRRFAPYTEVLKNIPEKQTIFIKKNRINTTRETSFMMYDLFLHVVDTAVYLAEGPLHVVQ SKLVEENGHLKRAILQLETEQTTIVCSMDLHSGANTETFEVTSPTGTYRLENLTHLTIQT EEEYQVKEMGDWTPTLEKRGFYQMVTAFIQAIQKPQEQELKQEKVYESHALCEEMLRQQQ RHVL >gi|307679032|gb|GL456765.1| GENE 26 25265 - 26020 807 251 aa, chain + ## HITS:1 COG:FN0047 KEGG:ns NR:ns ## COG: FN0047 COG0708 # Protein_GI_number: 19703399 # Func_class: L Replication, recombination and repair # Function: Exonuclease III # Organism: Fusobacterium nucleatum # 1 251 1 251 253 385 73.0 1e-107 MKCISWNVNGLRAVVKKNFMDVFNELDADFFCLQETKLQAGQIDLELPGYHQYWNYAEKK GYSGTAIFAKEEALSVRYGLGIEAHDQEGRVITLEYPEFFMVTCYTPNSQAELKRLAYRM TWEDAFRAYLNELNQEKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEERQKFTELLDS GFTDTFRYFYPEAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDILGS DHCPVEVVLDF >gi|307679032|gb|GL456765.1| GENE 27 26055 - 26588 605 177 aa, chain + ## HITS:1 COG:CAC0738 KEGG:ns NR:ns ## COG: CAC0738 COG0847 # Protein_GI_number: 15894025 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Clostridium acetobutylicum # 1 159 1 158 306 128 43.0 6e-30 MNFYAFDFETASYDKHSACSIAIVKVENSRIVDEFYTLIKPETPFFWRNTQIHGIHESDV VNAPKFPEVWQQIQHCFQPNRLVVAHNASFDCSVLAGCLDYYGLEQPNYLSLCTVKTSRK LFPEFPNHKLNTVCENLNITLNNHHDALEDSRACAEILLQQEQRFGVEPLKKLVLVK >gi|307679032|gb|GL456765.1| GENE 28 26709 - 27299 302 196 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|255971864|ref|ZP_05422450.1| ## NR: gi|255971864|ref|ZP_05422450.1| predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis DS5] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9521_02585 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9504_01019 [Enterococcus faecalis TX0102] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis DS5] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9521_02585 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9504_01019 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9501_02137 [Enterococcus faecalis TX0027] hypothetical protein HMPREF9508_00584 [Enterococcus faecalis TX0312] # 1 196 1 196 196 284 100.0 3e-75 MYSILYLFIDSLKNAWRSKNQFSTLILIFIISFLTFSALLLTLLFSRWLSQMILLDNYAV IPPLTIFRGLAGISAGTLFFFLISYICRTFFLTFLEQKNDLLILALLGTTKLQILISYAL QPIYYLIFILPLAAFLANKLIQQFIHDFFSEVPGLMHIDSYMQGIFLPLTGSLLFICCCV FLILFRKLNRLIKKGT >gi|307679032|gb|GL456765.1| GENE 29 27399 - 29081 2102 560 aa, chain - ## HITS:1 COG:FN1984_1 KEGG:ns NR:ns ## COG: FN1984_1 COG0492 # Protein_GI_number: 19705280 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Fusobacterium nucleatum # 3 315 2 315 332 354 57.0 2e-97 MTEEIYDLIIIGGGSAALSAGIYAGRAMMDTLIIEKDKIGGQVTTTSEIVNYPAIRHTTG PELMEEMRSQAQDFGVAFTNDEIIDVDFSQTIKTVQSASQTYQAYAVLIATGASARKIGF PGESEFTGRGVAYCSTCDGEFFQGLDIFVIGGGYAAAEEAVYLTRYGKSVTMIIREPDFT CAKLTAEAAKNHPKVKIVYNTEVKEIMGDDFVRKAVFVNNQTGEETVYEAPKDSTFGLFV FAGNKPSTEIFEGKIALDRGYVPTTENMETNIPGVYAAGDLRIKELRQIVTAVADGAIAA THAQRYVTEQKTQAGQSIVTKRMTERLANQSAPETSSQQPKEKQPAKVTGKHQWFPESMR QQLSGIFAKLTKKVTLLQFLDASDEKSLELQSFLTEFASLDQKITLETILKDTEPAKELL YGIEKMPSVVLLDAAGNYTGIKFSGIPSGHEVNSLVLAVYNVGSEGQPLEASLQKNILAL PKRKIEIFVSLTCHFCPDVVAACQRIASINPHVEAEMVDISLFPELKKEKKIMSVPAMLI DGEQMIFGSKTMTEIIEALA >gi|307679032|gb|GL456765.1| GENE 30 29178 - 29741 747 187 aa, chain - ## HITS:1 COG:TP0509 KEGG:ns NR:ns ## COG: TP0509 COG0450 # Protein_GI_number: 15639500 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Treponema pallidum # 2 187 3 188 188 236 55.0 2e-62 MNLINQKLFDFECDAYHDGEFTRVSTEDILGKWSIFFFYPADFSFVCPTELGDMQEHYAH LQELNCEVYSVSEDSHYVHKAWADATETIGKIKYPMLADPNGQLARFFGVLDEASGMAYR ASFIVSPEGEIKSYEINDMGIGRNAEELVRKLEASQFVAEHGDKVCPANWQPGEETIAPS LDLVGKI >gi|307679032|gb|GL456765.1| GENE 31 29982 - 30671 943 229 aa, chain - ## HITS:1 COG:SPy1391 KEGG:ns NR:ns ## COG: SPy1391 COG4122 # Protein_GI_number: 15675315 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Streptococcus pyogenes M1 GAS # 3 227 10 233 235 226 52.0 3e-59 MRNEMMHRPVVKPELVEYMRTKQKKLPGELGAVEAEANEAGVPIIPHETVVFLQFLLGQL KPKNILEIGAAIGFSSSLMAQFVGEDGHVTTIDRFDVMIKKAKKTYQRLDLEEKVTLLEG QAAEILPTLEGPYDFIFMDSAKSKYIEFLPECLRLLPVGGVLMVDDVFQAGTILDPAEEV PKKNRAIHRKLNQFLDVVMAHPDLTSTLVPLGDGVILITKEKETIILDS >gi|307679032|gb|GL456765.1| GENE 32 31287 - 32291 1115 334 aa, chain - ## HITS:1 COG:lin0931 KEGG:ns NR:ns ## COG: lin0931 COG0095 # Protein_GI_number: 16800002 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Listeria innocua # 1 334 1 331 331 403 61.0 1e-112 MIFVPNENNDPRVNLAIETYLLTEMPLDEPILLFYINEPSIIIGRNQNTIEEINKEYVDE HGIHVVRRLSGGGAVYHDHGNLNFSFIMPDDGNSFRDFAKVTQPIIQALHDLGVEGAELK GRNDLVINDMKFSGNAMYATNGRMFAHGTLMFDSDIDEVVNTLKVRKDKIESKGIKSVRS RVTNIKPFLSEDKQEMTTEEFRQEILLKIFGVDSIDQVKTYELTDQDWAAINKISEQYYR NWDWNYGKSPAFNLERRHRFPIGSIEMKMNVADGAIQEIKIFGDFFGLGEIKDVEDILTG VKYDKASLEEAIDQIDVKKYFGNIEKEDLLGLIY >gi|307679032|gb|GL456765.1| GENE 33 32324 - 33064 939 246 aa, chain - ## HITS:1 COG:SPy0208 KEGG:ns NR:ns ## COG: SPy0208 COG1234 # Protein_GI_number: 15674406 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Streptococcus pyogenes M1 GAS # 1 240 1 249 259 268 57.0 9e-72 MKLTVLGCLGAYPYKGEGTSSYLLESEGFHLLIDAGSTTLVRLENYLDPLKLDAVILSHY HHDHIADLGVLQYYRQLYPTLEPTPILPIYGHTQDQMYFKELTLPNVSEGKEYFEAEELA VGPFLITFMETIHPVTCYAMRIVEKATGKVFVFTGDSGYLASFEDFAKDADLFLADTYLF EGNERHHAHFTSREAGEIAKAAQVKQLMLTHLPQHGSLEQLREEAQNYAGTEIPVTLAQP DLTVEI >gi|307679032|gb|GL456765.1| GENE 34 33210 - 34001 892 263 aa, chain - ## HITS:1 COG:no KEGG:EF2743 NR:ns ## KEGG: EF2743 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 263 1 263 263 432 99.0 1e-120 MKSLVTNSQHRANARRALDGQWGIMAWLTFLGVVLQSFLTSIVQNLFSGENQVFQSSFAA VLLQIFVLFALSYALYYAALKVLRGEKVRVNILMSVFQGKYYGPLFVVNLLQKVLERVIG LLFLLPILFGAGTTLYFKLMFNTVTPEEIQAFFLNDFSFFLAFGVASILIFLIGLFVSGV FQFAVWLRFDNPELPIMMALKQALYLMKNRFWQYLCLQFSFIGWYIVGFLAIGIGLLWVI PYNYVALASFYQTALEEKGLAEE >gi|307679032|gb|GL456765.1| GENE 35 34022 - 35104 1533 360 aa, chain - ## HITS:1 COG:BS_ysdC KEGG:ns NR:ns ## COG: BS_ysdC COG1363 # Protein_GI_number: 16079934 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Bacillus subtilis # 8 358 10 359 361 449 60.0 1e-126 MDAKEEKMLIDLTSAKGIAGNEDEVRSLFKKYAAPYADKFLYDGLGSIIAKNVGDKEGPK VYISGHMDEVGFMVTQITEKGFLKFQTVGGWWGQVMLAQQVQIKTTTGKVYHGVIGSKPP HVLTVEVRNKPYEIADMFIDIGASSDQQVAEWGIHPGDMVTPYIDYRRMNDTKFLLAKAW DNRIGTAVSLKVLENLATEGHPNILFAGSDVQEEVGLRGAQTSTHLVNPDIAFALDTGTA GDTPGMTPKEADSVLGEGPQILIYDASMIPHKKLRDFVIQVAEENNIPFQYTVITGGGTD AGRMHLTRNGIPSLAITVPVRYLHSHTSVIHEDDYFNTVKLVTEVVKRLDKETVAKLTSY >gi|307679032|gb|GL456765.1| GENE 36 35317 - 36456 1205 379 aa, chain - ## HITS:1 COG:lin0970 KEGG:ns NR:ns ## COG: lin0970 COG3966 # Protein_GI_number: 16800039 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) # Organism: Listeria innocua # 1 366 45 413 424 259 36.0 5e-69 MAPNVLKGNVIKNKAVASGKYVPFFGSSELSRFSAFHPSVLSEKYQRNYRPFLLGEAGTQ SLTQAMVIHSMGDAIANKKAVFILSPQWFVKKGVPNDSFGAHYSQLQTYQWLANLTELTS GDQYLAQRLTKFPVVQKDKVLMETLANLQAGQLPQRSQRDYFIMNLRFLNREDELFSQIG MVSREPIVEKDMKQLPATYNFNELDQLAGKIAAKAINNNKFEISNGFYRQRIKPVLPKLA HSQKKWDYRFSPEYGDFQAALEQLAEKNVDVLFVIPPVNKRWSDYTGLSQDMLQQVARKL KYQLQEQGFTNIADFSTCSNERYFMADTIHLGWRGWLAVDRQVDEFMKQPASKKLAYQID DRFYQTDWQQQNPLVLPQF >gi|307679032|gb|GL456765.1| GENE 37 36591 - 36827 522 78 aa, chain - ## HITS:1 COG:lin0971 KEGG:ns NR:ns ## COG: lin0971 COG0236 # Protein_GI_number: 16800040 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Listeria innocua # 1 78 1 78 78 82 65.0 2e-16 MNIQETVLNILEDITGTDEVVNNQDIQLFEEGLLDSLATVQLLVEIEGQLGIQVPVSDFD REVWGTPKQIIQQVEALQ >gi|307679032|gb|GL456765.1| GENE 38 36860 - 38065 1329 401 aa, chain - ## HITS:1 COG:SP2175 KEGG:ns NR:ns ## COG: SP2175 COG1696 # Protein_GI_number: 15901985 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane protein involved in D-alanine export # Organism: Streptococcus pneumoniae TIGR4 # 4 401 7 412 413 359 48.0 6e-99 MMNFPHMIPYNAPYYFVLLIAALLPMILTLAIKGTRWPWYQTLVTLVFLYISFGGEFWQQ GVALIVYVIYQTLLTWGYAAYRKNKNAGWVFYLAVFLAILPLVWVKVSPFMTGKTTLLGF LGISYLTFKAVQVIMDLRDGVMKEYHPFRYIQFLLFFPTISSGPIDRYRRFEKDLKNPPS AEKYLDFLEKGIFYLFLGFLYKFIISHYLGGVFLPHVEKMALAQGGLSWWTVGYMYNYSL YLFFDFAGYSLLAVGTSYLMGYDTPMNFNKPFLSWNIKEFWNRWHMTLSFWFRDYIYMRL MFFLMKKKVFKSRIVTSNIGYFALFLIMGIWHGLTWFYIAYGLYHATLICVTDAWLRFKK KHKDKIPSNKFTHAFAVFLTFQAVCVSFLIFSGFLDKLWFK >gi|307679032|gb|GL456765.1| GENE 39 38062 - 39582 1877 506 aa, chain - ## HITS:1 COG:SP2176 KEGG:ns NR:ns ## COG: SP2176 COG1020 # Protein_GI_number: 15901986 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Streptococcus pneumoniae TIGR4 # 4 504 6 514 516 487 50.0 1e-137 MEKVINMIQTIDEWARKEPQRPVYLTEEKVSTYGELKEKSDNLAAYLAELKTDKSAIVVY GELDFEMIVSFLGASKAGFSYIPIDAHTPKERIELILNVAKPTAVIAVHEWPELATEVPV ITAEELTEMMMHAPRHAPALMPVTGASNYYIIFTSGTTGVPKGVQISHDNLVSFTNWLLQ DFGLEEGARFLAQAPYSFDLSVMSIYPALALGGSLTPLPNEIINDFKQLFTRLPQLTIDV WVSTPSFIELCLMEPSFDGEHLPALRTFLFCGEELPKPTAEKLAARFPTAHIYNTYGPTE ATVAISAIEITQEVLKSVQRLPIGYVKEDTQIYIMEGMSKLPAGEIGEIVIAGPSVSKGY LNNPAKTAEAFFQLDGVPAYRTGDAGKLVDNLLQYEGRLDFQIKLHGYRIELEEVDHHLT NVSYVKQAVVVPKYQGNKVQQLIAYVVPQAHEFSSDFQLTKAIKQELATLTMDYMIPQKF VYVEQLPLTSNGKIDRKGLMNEVNAT >gi|307679032|gb|GL456765.1| GENE 40 39597 - 39746 150 49 aa, chain - ## HITS:1 COG:no KEGG:EF2750 NR:ns ## KEGG: EF2750 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 49 1 49 49 67 100.0 3e-10 MKTTFQKILNNESLKFIGKTLFYSFIVIALIYLYHYKNINGGTFIYNEF >gi|307679032|gb|GL456765.1| GENE 41 39950 - 42046 1784 698 aa, chain - ## HITS:1 COG:lin2220 KEGG:ns NR:ns ## COG: lin2220 COG0577 # Protein_GI_number: 16801285 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Listeria innocua # 2 693 3 642 646 189 25.0 2e-47 MIFKLSLKNLKAHVPNYLVYYISMTFAAVVYYCFRAIAYNQPLVAGAGRDIEIKRSLGLG STLVTIIILGFMLAANRFFIGKRSQEIGLYRLIGLRKSQVSLIFLVENLVLGFVSLINGI ILGVIFTKLFSMILAKVMFLEVPSFFYISWRSVIETGVAFAFMILIVCLRSIWMIYRYPL SQLMHQEKIGQINYSRLTKRRQFLGILGPICLLAGYFIAFDFRNLATGIVYKQLNDSLDI SIPMIITLTPFIILGLCVVGTYLFFRYTMYFIIRLFNHRKKWYYQDLRMITLGNAKRYLF KSSKTLTGLTLLIATALSGIGVMVFVYTISMHTVNSDGPVDFLVSQESYPKLKKVLDEAK DTKIKNEVILSYKITGIERSLRIGQAQEEQETIEAVNVLSFSNYRNYQKINPYLNDLHLK NDQSVIYMDSFTNILSGMSRYESKLQFVEGEKAQLQQVLPNYLGNFLLQYSLPTIVVSDA LYQKVTKNSIQYQINAVNVDTKSREKLYEAVNKQIATEWQAPILYKYEKNNQQLSGFAKQ MPNEEAKNTQDDVTETWRLNMNDRYASLRYERKINGLTLYVSMFVAILALFITGSILMLR QLFSAVSERQDYVTLKRMGVSSKAITKQIYRQNSLIFFPPMVIGILHTTFAIYLLSQFIK SPGYLLVYLSCGILIIVYLIFYILTSAIYARMIRHIHF >gi|307679032|gb|GL456765.1| GENE 42 42036 - 42803 290 255 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 222 1 219 223 116 31 4e-25 MKKIVEVNHVSKTYGRLNNKTEVLDNISFTVDEGEFVGIMGPSGAGKSTLLNVLSSIILP TAGIVRIAGQDILKMRDNQLSDFRRNEMGFIFQSFNLIDTLNVKDNILLPLAVEKVSLEE MDKRLLHVTSILGIQELLSAYPPEISVGQKQRVAAARALITNPKIIFADEPTGSLDSKSA TELLKYLAEINLHDDATILMVTHDPYTASFCNRILFIKDGAIFSEVVRQGSRKEFFNRVI DMQATIGGGGRANDF >gi|307679032|gb|GL456765.1| GENE 43 43209 - 45392 1993 727 aa, chain + ## HITS:1 COG:SPy2110 KEGG:ns NR:ns ## COG: SPy2110 COG1328 # Protein_GI_number: 15675860 # Func_class: F Nucleotide transport and metabolism # Function: Oxygen-sensitive ribonucleoside-triphosphate reductase # Organism: Streptococcus pyogenes M1 GAS # 17 725 15 722 732 1198 79.0 0 MMKITDEKAEDVNLSTIKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSI VADVNREIAERFTNNVKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERSKATDINV SIGKLINKDQTVVNENANKDSDVFNTQRDLTAGIVGKSIGLKMLPSHVANAHQKGDIHYH DLDYHPYTPMTNCCLIDFKGMLNNGFKIGNADVESPKSIQTATAQISQIIANVASSQYGG CSADRIDELLAPFAERNYEKHLADAQEWIEGEERQKAFARKKTKKDIFDAMQSLEYEINT LFTSNGQTPFTSLGFGLGTNWFEREIQRAILQIRINGLGIEKRTAIFPKLIFTIKRGVNA QPTDPNYDIKQLALECATKRMYPDVLNYDKIVELTGSFKVPMGCRSFLQGWKDEQGEEVN VGRMNLGVVTLNLPRIALEAQGSQEKFWQILNERLAIVKDALVYRVERVKEAKPANAPIL YMYGAFGKRLATQDAVDELFKNKRATVSLGYIGLYEVASAFYGGAWEDNQEAKNFTLDIL KELKKNADNWGNEYGYHFSVYSTPSESLTDRFCRLDTEKFGIVENITDKEYYTNSFHYDV RKNPTPFEKLDFEKDYPKYCSGGFIHYCEYPMLQQNPKALEAVWDYAYDKVGYLGTNTPI DHCYACGFEGDFHPTERGFECPECGNHDPKTCDVVKRTCGYLGNPQARPMVHGRHKEISS RVKHLKN >gi|307679032|gb|GL456765.1| GENE 44 45425 - 46021 601 198 aa, chain + ## HITS:1 COG:SP0205 KEGG:ns NR:ns ## COG: SP0205 COG0602 # Protein_GI_number: 15900141 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Organic radical activating enzymes # Organism: Streptococcus pneumoniae TIGR4 # 1 196 1 195 196 283 67.0 1e-76 MRNPKPQEWKTEDYSQKKIADYKAFNFVDGEGVRNSLYVSGCLFACEGCFNKAVQNFNYG TPFTESLMNQIIEDLSHDYVQGLTLLGGEPFLNTDVCLSVVKRVRETFGSAKDIWSWSGY TFEELLLETPDKLELLHSIDILVDGRFELAKRNLNLQFRGSSNQRIIDVPKSLAAGKAVI WEKCHDAETSYEQIKKSI >gi|307679032|gb|GL456765.1| GENE 45 46066 - 47184 1257 372 aa, chain - ## HITS:1 COG:SPy1846 KEGG:ns NR:ns ## COG: SPy1846 COG0389 # Protein_GI_number: 15675671 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Streptococcus pyogenes M1 GAS # 5 357 2 354 364 431 60.0 1e-121 MMSELRFPLKKDTSRKIIHIDMDAFFASVEERDHPELVGHPLVIARHPSDTGGKGVVTTA NYIARQYGIHSAMSAQKAYELCPSAIFKPGNYQKYSEISQEIREIFRRYTDVIEPVSIDE AYLDVTENKVNSKSAIKIAKMIQYDIWHELQLTCSAGVSYNKFLAKLASDFQKPKGLTVV LPEEAEDFLKALPIEDFHGIGKKTVPKMHELGIFTGADLYKQDEMTLIRLFGKMGYSLYR KVRGIHDAPVQVTRDRKSVGKEHTYGTPLTTEEQVTAQLRQLAAGVERALQRVQKHGKTV VLKVRYTDYTTITKRVTLPEYISKKEELFYQANLIWEDILGLEQGIRLLGITLTNLDPLA YENIVLPLWEKS >gi|307679032|gb|GL456765.1| GENE 46 47310 - 48068 691 252 aa, chain - ## HITS:1 COG:STM0503 KEGG:ns NR:ns ## COG: STM0503 COG0390 # Protein_GI_number: 16763883 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Salmonella typhimurium LT2 # 5 252 6 253 259 261 60.0 9e-70 MDLAVNNLSLFFSAMLVVVALIISTKEKLGFTKDIIISVIRAVIQLVAVGYLLKYVFQVN NLILTLIMVLVIVSNAAFNAKKRSQQLQKGFLISFIAIGCSTGITIGILIFSGSIKFIPS QIIPISGMIASNSMVAIGLCYRNLDTLFQNQRQAVMEKLALGATIKLASLPIIQQSVKTG MAPTIDSAKTVGIVSLPGMMSGLIFAGVDPVHAIKYQIMVTFMLLSATSIGSVIATYLAY KGYYNQQKQLVV >gi|307679032|gb|GL456765.1| GENE 47 48052 - 48714 213 220 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 193 1 199 223 86 32 3e-16 MSNLLRAEGVSYQVNGRSILSDIDLSFETGSNTTIVGPSGSGKSTFLKILSSLLSPTEGE IFYQEAPITTMPIETYRQKVSYCFQQPTLFGETVYDNLLFPFTVRQEAFNQEKVVALLQQ VKLPAAYLEKKIAELSGGERQRVALLRNIIFVPDVLLLDEVTTGLDEESKQIVNQLLNQL NKEQGVTLVRVTHDTEEIQQAQQVIRIVAGKVAPTDGFSS >gi|307679032|gb|GL456765.1| GENE 48 48729 - 49601 979 290 aa, chain - ## HITS:1 COG:L6615 KEGG:ns NR:ns ## COG: L6615 COG0313 # Protein_GI_number: 15672384 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Lactococcus lactis # 4 290 19 302 302 294 54.0 1e-79 MQKQKSFDKQTTKGKLYLVPTPIGNLEDMSIRCLNILKEATVIASEDTRNTQKLLNHFEI TTPQISLHEHNYKERIPQLITRLLSGETIAQVSDAGMPSISDPGHELVTACLEEELAVIA LPGPTAGMTALIASGLLPQPFTFYGFLPRKKKEQKDVLSALKEERPTQIFYESPYRIAKT VATFAEVYGQERPAVICRELTKLHEEYLRGTLGELTEYLAENTLKGECCLLVSGFTGEKE TIAAMPAISLKEHVQVLMEEEGRSSKEAIKEVAKLRNVKKQEVYKEYHSI >gi|307679032|gb|GL456765.1| GENE 49 49714 - 50061 492 115 aa, chain - ## HITS:1 COG:SPy0405 KEGG:ns NR:ns ## COG: SPy0405 COG4467 # Protein_GI_number: 15674542 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 109 1 104 107 75 40.0 3e-14 MDKRSLYDGLNSLETDLDSSVTQLREIKAALHELVEKNTTLEIENQRLREHLQELNKLAG NTTETEKQELSKSRMNLEKLYEEGFHVCNILYGSRRENDEECAFCLDVIYGERTR >gi|307679032|gb|GL456765.1| GENE 50 50054 - 50893 1134 279 aa, chain - ## HITS:1 COG:BH0045 KEGG:ns NR:ns ## COG: BH0045 COG1774 # Protein_GI_number: 15612608 # Func_class: S Function unknown # Function: Uncharacterized homolog of PSP1 # Organism: Bacillus halodurans # 1 249 1 249 275 321 65.0 8e-88 MVEVVGVRFREAGHIYYFAPGKSEYIYNEKVLVESQQSKQLATVAIPKKTVDSDDLPEDL KPILNKATANDLEKEQKNLADAEAAKSIANEKIRAHDLKMKLVRVEYTFDRSKMIFYFTA DGRIDFRELVKDLAAIFRTRIELRQIGVRDEAKILGGIGPCGRQLCCSTFLGDFMPVSIK MAKDQGLSLNPVKISGLCGRLMCCLKYENDEYEAAKKELPDYGKEVITPDGKGKVVGLNL LSRIVKVRLHGREIAADYDYEEIKEATAKVAAEKGDQNG >gi|307679032|gb|GL456765.1| GENE 51 51010 - 51960 820 316 aa, chain - ## HITS:1 COG:BS_holB KEGG:ns NR:ns ## COG: BS_holB COG0470 # Protein_GI_number: 16077099 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication # Organism: Bacillus subtilis # 5 311 6 326 329 222 38.0 7e-58 MNEAQQLQQMQPLLYKQLQKSFEHGRLAHAYLFEGDTGTGKQEFGLWMAKHVFCTNLVNQ QPCNECHNCVRINENEHPDVLRIAPDGQTIKVNQIRELKAEFSKSGVETAKKVFLIQEAD KMSTGAANSLLKFLEEPEGQILAILETTSLSRILPTIQSRCQTLHFQPLVKKTLIDRLIK QGIGEKTATLLAELTNSFEKAVEISQDEWFNEAREIILQWFNYLKSNDLQAFIYVQKKMV KVFKEKEQQALSFDLLMVYYRQLLEESVATQQAKKVTEEQAERLALILKARQKWTANVSW QNVCEQLVIQMIHPKS >gi|307679032|gb|GL456765.1| GENE 52 51962 - 52291 500 109 aa, chain - ## HITS:1 COG:lin2840 KEGG:ns NR:ns ## COG: lin2840 COG3870 # Protein_GI_number: 16801900 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 109 1 109 109 143 59.0 7e-35 MKIILAIVQDKDSNRLANEFIDANIRATKLSSTGGFLKAGNSTFIIGIDDERVDETLALI KETCQSRKQYVSTPVTLDITMDGQIPYPVEVEVGGATCFVLPVEGFHQY >gi|307679032|gb|GL456765.1| GENE 53 52311 - 52949 812 212 aa, chain - ## HITS:1 COG:BH0042 KEGG:ns NR:ns ## COG: BH0042 COG0125 # Protein_GI_number: 15612605 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate kinase # Organism: Bacillus halodurans # 2 207 3 207 210 218 56.0 7e-57 MQGIFITFEGPDGAGKTSVLKEVSERLAKESKRKIVTTREPGGIPIAEKIRTVILDPRND RMDERTEALLYAAARRQHLVEKILPALEAGHLVLCDRFVDSSLAYQGAGRRIGIAPIASI NAFATEGVSPDFTIYLDVDSDTGLRRIQENRTQQIDRLDSEGLEFHQRVRHEYLKLAEEN PQRIKKIDARMSLELVVEATYQAIIERYPENF >gi|307679032|gb|GL456765.1| GENE 54 53158 - 53754 563 198 aa, chain - ## HITS:1 COG:L0265 KEGG:ns NR:ns ## COG: L0265 COG0353 # Protein_GI_number: 15672322 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Lactococcus lactis # 1 198 1 198 198 300 75.0 2e-81 MNYPEPIAKLIESYMKLPGIGQKTATRLAFYTIDMKEEDANAFAKALISVKRDLHFCSIC GNITEEDPCEICQDKNRDRSIILVVEEPKDVMAMEKMREYQGLYHVLHGVLSPMEGTGPE DINIASLIKRLHDDEVKEVIIATNATTEGEATAMYLSRLIKPAGITVTRLAHGLSVGSDI EYADEITLLKAVEGRREI >gi|307679032|gb|GL456765.1| GENE 55 53930 - 54592 946 220 aa, chain - ## HITS:1 COG:L0228 KEGG:ns NR:ns ## COG: L0228 COG0819 # Protein_GI_number: 15673761 # Func_class: K Transcription # Function: Putative transcription activator # Organism: Lactococcus lactis # 1 218 1 218 218 222 55.0 4e-58 MTFTEQAKEQAQASWQGSFQHPFITELHEGTLSPTIFRYYLIQDHYYLKHFSQLYRLIAA QTQQPRLKKLLLTNAESLALGELAIRETFFEELAITEEEVAATPIAPTAYHYVSHMYRQL IEGTPKTAAASMLPCSWLYQEIGAQLVKQHSPEPLYQRWIETYAGEEAYQHVQEERQLLD QLYEESSPQEQAAMITAFVISSEMEYAFWEMAYTHETWIG >gi|307679032|gb|GL456765.1| GENE 56 54604 - 55257 470 217 aa, chain - ## HITS:1 COG:no KEGG:EF2768 NR:ns ## KEGG: EF2768 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: ABC transporters [PATH:efa02010] # 1 217 1 217 217 351 100.0 1e-95 MQIKQTNAAIYASLILILTFELSFSQSILANLAVFMGCVIFLIGQRKSRLLLWLFFLPLL PAIGTFWSIYLHGTSSQQAWLLFSRTYAFAGLGLAFAVGVDFEELLLLLEQKGLAPNFVY GILVVVHALPEVKREINDLKEASLLRGKTFHFWSPMLYVKTLLVAVSWRDKYTEAMSAHG YEEGATRSRKEHFVSAKVSLGLAILIIIFTNLFIFLT >gi|307679032|gb|GL456765.1| GENE 57 55248 - 56606 761 452 aa, chain - ## HITS:1 COG:SP0720 KEGG:ns NR:ns ## COG: SP0720 COG1122 # Protein_GI_number: 15900617 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Streptococcus pneumoniae TIGR4 # 4 452 3 447 461 309 40.0 6e-84 MNSIQLKAVSFSREQPLFEKTNLAIPQGTFSLLIGDSGSGKSTLLRLIAGFAPLDYQGEI LIEGMERRQLSTREKAQKIGMLFQNPSQQFTMKTLERELIFALENLGISPEEMNRKIQTA LQLVQTQTLFTRELATLSGGEKQKAALTVLLAMNPDILLLDEPFASIDPTSRKQFIQILA RLHQAGKTILVCDHDFNDYADVVDQVVTLKNGQFEKQPLTFIKTKPQTFQLTTSVVKQPM LQLKNFRLSQGKRVLLEEKEALLFKGITTLTGPNGAGKSTLLKAIVQRQKYQGKMFLAGR RLRASKKLYQHMTLAVQQANRQFVTLTLREELLFGQNMTAEKRRKQEEALTFLGLKEKLE HSVFQLSEGQKKMVQLISLLSLDLDCLLLDEPFAGLDERACNYFVEWIKEKSAQQDFLIV THRLEPLSGVSNYRIELLQQQLNIWQEGTTCK >gi|307679032|gb|GL456765.1| GENE 58 56603 - 57166 687 187 aa, chain - ## HITS:1 COG:SP0719 KEGG:ns NR:ns ## COG: SP0719 COG4721 # Protein_GI_number: 15900616 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 1 177 2 178 186 150 53.0 2e-36 MKKWSLQQVVLLAFLAFLFGGVFMGAGFLYALLNAALLPLGLSPFANELLFGMWTMVAPI AAMLIPRAGSAVLAEVLAALAEMLYGSYFGPSVLISGVIQGLGSESGFFVTRYKRYDTLT LFYSAIGTTIFSYVYEYFKFGYGNYGLGMNIALISVRFVSICFFGIFLTKVILRMYQSAQ GLAVKSK >gi|307679032|gb|GL456765.1| GENE 59 57540 - 58325 822 261 aa, chain + ## HITS:1 COG:no KEGG:EF2771 NR:ns ## KEGG: EF2771 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 261 1 261 261 434 99.0 1e-120 MGKTLTGFHLKVIGVISMVFDHLLQFFSFLGVPGWFGWIGRIAAPIFLFESSEGFIHTSN RRKYMFRLLLGFWIMGILNGILNAYFSTGGLIINNIFGTLFLGTVYMQSMDYFKQKQIGK GLLWFIVPLLISALPLVVFSSPDILSNPAILIGFQIFNLIVPSLMMTEGGFLFVLLAVAF YLFHGKKWLQISAIGVVALISAASYNFQELFGVNHQWMMILAAIPIVLYNGEKGRGMRNF FYIFYPAHIAIFAIISFFMQR >gi|307679032|gb|GL456765.1| GENE 60 58489 - 59850 1265 453 aa, chain + ## HITS:1 COG:L184818 KEGG:ns NR:ns ## COG: L184818 COG0477 # Protein_GI_number: 15673330 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 2 451 3 449 454 325 48.0 8e-89 MEQKNVRLFPAVLATGIMSFAGVLIETAMNVTFPTLTKEFGVSTGTVQWVTTIYLLVISI MVPLSNYLLKTYSLRRLFIVANLFFLIGLAIDVYSPSFSILLLGRLFQGASTGIALPLMF HIILNFTPLEKRGTMMGVGTLTTSIAPAIGPTYGGILTSSLSWHAIFLFLIPVLLLSLFM GLSAIPEIPVKKTTTLDLVSLIGIALLFSGLLMFLSKIGTLFGWLSLLAAVIGFVIFYKR ATTAEQPLVRLTILKNPSFVLFLCGFLVCQFLLLGISFVLPNFVQIVLGKNAFVAGLVML PGATVGAILAPLSGRVLDQYGAKKPILFGLSLATIGWLALTILLEMPVLLGFVAGHVTYM IGLGFAYSNMMTTGMSLLEEKDFGDGNTLFNTLQQFSGAIATAIVATIINIAQDHADNFA QGTTMGSLISLIFLLTLLVIVLIACWNYFRKKA >gi|307679032|gb|GL456765.1| GENE 61 59901 - 61091 1240 396 aa, chain - ## HITS:1 COG:L131423 KEGG:ns NR:ns ## COG: L131423 COG2814 # Protein_GI_number: 15672314 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Lactococcus lactis # 3 392 2 392 393 427 70.0 1e-119 MEKKISPNLTLFALAINAFAIGSTEFISVGLLPMIVKSFHISLSQAGLTVSLYALGVTIG APLLTILTGKWNRRSLMLGIMLLFISGNLIAAFAPTFIILLVGRILSALAHGIFMSVSTV IAADVVPPSRRASAIAIMFTGLTVATVTGVPLGTFIGQQTAWHMSFLFIASIGLVGLIAS YFLVPKNLPIPGKVDLKGITRIFTNKPLVFSFLITAFGYGGTFAAYTYLSPLLENLGFSA NAVVIILVVYGVMVAIGNTVGGHWANKKPLDSLVKMFSLLILSLVFLFITVLMDNSLLGL LASLMLGLFAFMNVPGLQLYVVELAEKYVPKDITLASAFNIAAFNIGITVGSMTGGVVTD HLSVTYTPIFGGFIVLIAVLFVLYIRKQEEQKNNYL >gi|307679032|gb|GL456765.1| GENE 62 61236 - 61592 438 118 aa, chain + ## HITS:1 COG:L133547 KEGG:ns NR:ns ## COG: L133547 COG1733 # Protein_GI_number: 15672316 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 4 112 3 111 115 162 72.0 1e-40 METRTYAIGVEATMDVIGGKWKPIILCNLRHGAMRPSDLKRGITGISQKMLTQQLRELEE DNIIERKVYNQVPPKVEYYLSDYGQSLSAVLDNLCNWGESHVAHLQEQGQEIYLKCED >gi|307679032|gb|GL456765.1| GENE 63 61686 - 62516 1099 276 aa, chain - ## HITS:1 COG:L0200 KEGG:ns NR:ns ## COG: L0200 COG0351 # Protein_GI_number: 15673245 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Lactococcus lactis # 9 269 6 266 267 256 53.0 5e-68 MTEYNLTPQVVTIAGSDSGGGAGMQADLKTFQARQAFGLNIVIALTAQNTYGVQDSLPIP SSFIDAQFQSLAADFKIGAAKTGMLADSDRVEAVVRNLQKVDFGPLIVDPVMVAKGGHHL LEAEAVQTIKEQLLPLATVVTPNLPEAEVLLETTIKTEQEMQTAAKKLQQLGTKNIIMKG GHSTNQQAADYVLMEDGSSFWLSAPRIVTKNTHGTGDTFSACIAAELAKGTPLEAAIVIG KQFIQGAISQAISVGHGHGPTNHWAQLTQDIQVIKA >gi|307679032|gb|GL456765.1| GENE 64 62513 - 63148 604 211 aa, chain - ## HITS:1 COG:SP0725 KEGG:ns NR:ns ## COG: SP0725 COG0352 # Protein_GI_number: 15900622 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate synthase # Organism: Streptococcus pneumoniae TIGR4 # 2 207 3 209 210 241 60.0 9e-64 MREQLKVYLVTGRYDFSDTEFLNRIETACRSGVTLVQLREKEVSTRRFYELAVKVKAVTD AYQIPLIINDRVDICLAVDAAGVHIGDDELPVALVRKLVGSTKIVGVSAKTVARGVEAEN EGADYLGVGAIFPTTTKDSPLTSLQTLSEIAAAVTIPVVAIGGIKEENIEQLMGTGVAGV SLVSEIMLAEQITEKVQGLMRVTERMLEARK >gi|307679032|gb|GL456765.1| GENE 65 63145 - 63963 684 272 aa, chain - ## HITS:1 COG:SP0724 KEGG:ns NR:ns ## COG: SP0724 COG2145 # Protein_GI_number: 15900621 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxyethylthiazole kinase, sugar kinase family # Organism: Streptococcus pneumoniae TIGR4 # 6 271 3 265 267 243 46.0 3e-64 MKTNVKFETIFPLTTAPLIQCITNEITCESMANALLYIDAKPIMADDPREFPQLFQQTSA LVLNLGHLSQEREQSLLAASDYARQVTKPTVVDLVGYGASDIRNEVGEKLVHNQPTVVKG NLSEMRTFCQLVSHGRGVDGSPLDQSEEAIEELIQALRQQTQKFPQTVFLATGIQDVLVS QEQVIVLQNGVPELDCFTGTGDLVGALVAALLGEGNAPMTAAVAAVSYFNLCGEKAKTKS QGLADFRQNTLNQLSLLMKEKDWFEAVKGRVL >gi|307679032|gb|GL456765.1| GENE 66 63947 - 64477 600 176 aa, chain - ## HITS:1 COG:SP0723 KEGG:ns NR:ns ## COG: SP0723 COG4732 # Protein_GI_number: 15900620 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 5 175 7 172 174 185 58.0 4e-47 MEKNRIHRVTLLALMIAMDVVLSPLMRIEGMAPMSSVMNIIAGVLLGPLYGTLMALVCGL IRMTFLGIPPLALTGAVFGAFFAGLFYQWGQKLGWSMLGEIFGTGIIGSLLSYPVMVWFT GSKQNFYWFIYTPRFIGATLIGSVIAWLVLVKLKETRVFKQTQELFLGGYFYENKR >gi|307679032|gb|GL456765.1| GENE 67 64812 - 65126 619 104 aa, chain - ## HITS:1 COG:L122849 KEGG:ns NR:ns ## COG: L122849 COG0718 # Protein_GI_number: 15672102 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 5 102 1 98 99 94 59.0 5e-20 MMRGMGNMQGMMKQVQKMQKEMAKAQEALNEKEFIGEATNQLVTATFTGDRTMKDLTIKE DVVDPEDVEMLQDLVIMAVNDALVKIEKETEATLGKYTKGMPGF >gi|307679032|gb|GL456765.1| GENE 68 65147 - 66907 2260 586 aa, chain - ## HITS:1 COG:lin2852 KEGG:ns NR:ns ## COG: lin2852 COG2812 # Protein_GI_number: 16801912 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Listeria innocua # 1 585 1 579 579 527 48.0 1e-149 MAYQALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAK AINCKHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEY KVYIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRIST QDIVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQV TGSLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPK LLAEKAGTLTEAFKELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLAKTV QPNKHNTPETANQDGSAEGNPELADLQNQIGQLKKELAELKKHGVAAKEADAPRQQARPQ APKSSFRVPTERVYQVLNEATRTHLMNVKNVWEDLLQTLSVTQRAMLKASEPVAASPKGI VVAFDYEIVCARATDDEEMQLAFNNNLSRLMDYTPEMVCITRESWPKLRQSFINQNQGSL NHSEPENEMARLADEPPVTNEHSQENPVVDEAIAMFGEELVEVLDD >gi|307679032|gb|GL456765.1| GENE 69 66979 - 68193 1143 404 aa, chain - ## HITS:1 COG:L0027 KEGG:ns NR:ns ## COG: L0027 COG4468 # Protein_GI_number: 15673964 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose-1-phosphate uridyltransferase # Organism: Lactococcus lactis # 1 340 1 369 493 194 31.0 3e-49 MTTSQMIADFTTLAIQAGGWMELDRLYLQNRLLSMIGEQELGEVDIRPVATPAADLAEQL CQVASANQLVKTEQQKEQFMVQLMDLLTPPPSVVNAFFAQHYAKEPQEATEYFYQLCQKN GTVIEQEEPVVFSTVYGDFLANKVHSEASKATLSAQSYPRCEWCMATEGYQGSQQFPATT NHRVIRMNLDGESWGFSFVKQAQYQQQGVIAFEKHQSAKRSIKTFQQLLKIVEVFPHYFA GIDADFEQNEHVYYQTGLQQFPLAEASISEYVELANYPLINAGMVNWPVATFRLEGPNAS EVAQAANDIFEQWQMLKLPTDEIQIVARRKELLYVMDLIFSRPQAKPSLTLAEVQGLTTW NNQKTQALETVASAYQQRLKEASAFAETSEGKAAFLAMVAPVTH Prediction of potential genes in microbial genomes Time: Tue Jul 5 18:26:37 2011 Seq name: gi|307679031|gb|GL456766.1| Enterococcus faecalis TX0312 genomic scaffold Scfld27, whole genome shotgun sequence Length of sequence - 59630 bp Number of predicted genes - 57, with homology - 55 Number of transcription units - 29, operones - 14 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 705 741 ## EF3154 hypothetical protein - Prom 775 - 834 6.4 - Term 944 - 1007 21.4 2 2 Tu 1 . - CDS 1101 - 1814 825 ## COG2188 Transcriptional regulators + Prom 2008 - 2067 4.4 3 3 Op 1 11/0.000 + CDS 2109 - 4820 2297 ## COG1554 Trehalose and maltose hydrolases (possible phosphorylases) 4 3 Op 2 . + CDS 4835 - 5485 733 ## COG0637 Predicted phosphatase/phosphohexomutase + Prom 5630 - 5689 6.9 5 4 Tu 1 . + CDS 5850 - 6368 223 ## EF3160 hypothetical protein + Term 6477 - 6513 2.5 - Term 6574 - 6612 5.0 6 5 Tu 1 . - CDS 6685 - 6828 97 ## EF3247 hypothetical protein - Prom 6942 - 7001 8.3 - Term 7086 - 7126 -0.1 7 6 Tu 1 . - CDS 7236 - 7361 161 ## - Prom 7425 - 7484 7.4 - Term 7774 - 7815 10.3 8 7 Op 1 . - CDS 7825 - 8796 1130 ## COG0462 Phosphoribosylpyrophosphate synthetase - Prom 8851 - 8910 4.9 9 7 Op 2 . - CDS 8971 - 9408 512 ## COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase - Prom 9442 - 9501 3.5 - Term 9484 - 9535 3.1 10 8 Op 1 . - CDS 9541 - 10095 711 ## COG0424 Nucleotide-binding protein implicated in inhibition of septum formation 11 8 Op 2 6/0.000 - CDS 10120 - 12252 1955 ## COG0323 DNA mismatch repair enzyme (predicted ATPase) 12 8 Op 3 . - CDS 12284 - 14860 3007 ## COG0249 Mismatch repair ATPase (MutS family) 13 8 Op 4 . - CDS 14861 - 15232 546 ## EF3168 hypothetical protein - Term 15261 - 15319 5.1 14 8 Op 5 2/0.000 - CDS 15320 - 16117 1025 ## COG1692 Uncharacterized protein conserved in bacteria - Prom 16147 - 16206 6.6 - Term 16195 - 16248 16.1 15 9 Op 1 4/0.000 - CDS 16277 - 17833 2166 ## COG1418 Predicted HD superfamily hydrolase - Prom 17937 - 17996 7.2 - Term 18150 - 18201 1.0 16 9 Op 2 5/0.000 - CDS 18230 - 19276 1576 ## COG0468 RecA/RadA recombinase - Prom 19327 - 19386 4.8 17 9 Op 3 . - CDS 19390 - 20634 214 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase - Prom 20673 - 20732 6.5 + Prom 20678 - 20737 8.3 18 10 Tu 1 . + CDS 20826 - 22025 1532 ## EF3173 hypothetical protein + Term 22038 - 22099 15.5 - Term 22028 - 22083 16.2 19 11 Op 1 2/0.000 - CDS 22105 - 22725 894 ## COG2910 Putative NADH-flavin reductase 20 11 Op 2 . - CDS 22793 - 23218 557 ## COG1959 Predicted transcriptional regulator - Prom 23244 - 23303 2.4 21 11 Op 3 . - CDS 23307 - 23690 340 ## COG3304 Predicted membrane protein - Prom 23728 - 23787 7.4 + Prom 23771 - 23830 3.2 22 12 Tu 1 . + CDS 23854 - 24645 878 ## EF3177 hypothetical protein + Term 24659 - 24705 6.0 - Term 24647 - 24692 10.4 23 13 Tu 1 . - CDS 24698 - 25834 1484 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases - Prom 25861 - 25920 2.7 - Term 25910 - 25950 7.1 24 14 Op 1 . - CDS 25964 - 26848 828 ## EF3179 hypothetical protein 25 14 Op 2 . - CDS 26873 - 27370 569 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - Prom 27453 - 27512 7.8 - Term 27550 - 27603 8.4 26 15 Op 1 . - CDS 27607 - 29079 857 ## EF3181 hypothetical protein 27 15 Op 2 . - CDS 29063 - 29548 503 ## EF3182 hypothetical protein - Prom 29583 - 29642 2.1 - Term 29576 - 29621 11.8 28 16 Tu 1 . - CDS 29653 - 30726 1131 ## EF3183 cell wall surface anchor family protein, putative - Prom 30752 - 30811 5.2 - Term 30764 - 30817 9.4 29 17 Op 1 . - CDS 30838 - 31596 1105 ## EF3184 hypothetical protein 30 17 Op 2 . - CDS 31597 - 32397 977 ## EF3185 hypothetical protein 31 17 Op 3 . - CDS 32402 - 33136 1046 ## EF3186 hypothetical protein 32 17 Op 4 . - CDS 33093 - 33482 210 ## EF3187 cell wall surface anchor family protein 33 17 Op 5 . - CDS 33502 - 38349 5619 ## EF3188 hypothetical protein - Prom 38420 - 38479 8.7 - Term 38679 - 38722 12.6 34 18 Tu 1 . - CDS 38724 - 39737 957 ## COG0657 Esterase/lipase - Prom 39761 - 39820 5.9 + Prom 39815 - 39874 7.8 35 19 Tu 1 . + CDS 39903 - 40448 576 ## COG1335 Amidases related to nicotinamidase - Term 40503 - 40552 15.5 36 20 Op 1 23/0.000 - CDS 40645 - 41328 1071 ## COG1346 Putative effector of murein hydrolase 37 20 Op 2 2/0.000 - CDS 41325 - 41744 486 ## COG1380 Putative effector of murein hydrolase LrgA - Prom 41775 - 41834 8.0 - Term 41843 - 41891 13.4 38 21 Op 1 9/0.000 - CDS 41896 - 42624 825 ## COG3279 Response regulator of the LytR/AlgR family 39 21 Op 2 . - CDS 42605 - 44374 1586 ## COG3275 Putative regulator of cell autolysis - Prom 44394 - 44453 8.5 - Term 44408 - 44459 13.9 40 22 Op 1 22/0.000 - CDS 44466 - 45284 1096 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen 41 22 Op 2 32/0.000 - CDS 45297 - 45968 797 ## COG2011 ABC-type metal ion transport system, permease component 42 22 Op 3 . - CDS 45965 - 46687 367 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 46852 - 46911 6.7 - Term 46844 - 46913 5.0 43 23 Tu 1 . - CDS 47049 - 47441 294 ## COG1765 Predicted redox protein, regulator of disulfide bond formation - Prom 47510 - 47569 5.7 + Prom 47414 - 47473 5.3 44 24 Tu 1 . + CDS 47648 - 47917 457 ## PROTEIN SUPPORTED gi|29377650|ref|NP_816804.1| 30S ribosomal protein S14 + Term 47961 - 47990 0.4 + Prom 47936 - 47995 2.5 45 25 Op 1 . + CDS 48028 - 48177 247 ## PROTEIN SUPPORTED gi|29377651|ref|NP_816805.1| 50S ribosomal protein L33 46 25 Op 2 . + CDS 48193 - 49167 1048 ## COG0523 Putative GTPases (G3E family) 47 25 Op 3 . + CDS 49201 - 49323 131 ## 48 25 Op 4 . + CDS 49344 - 50879 1625 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin + Term 50890 - 50939 15.5 - Term 50878 - 50927 15.5 49 26 Tu 1 . - CDS 50937 - 51911 1033 ## COG0042 tRNA-dihydrouridine synthase - Prom 51982 - 52041 7.6 50 27 Op 1 45/0.000 - CDS 52099 - 52869 849 ## COG0842 ABC-type multidrug transport system, permease component 51 27 Op 2 . - CDS 52862 - 53797 963 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein - Prom 53871 - 53930 4.7 + Prom 53928 - 53987 4.0 52 28 Op 1 9/0.000 + CDS 54055 - 54474 545 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 53 28 Op 2 13/0.000 + CDS 54487 - 54978 723 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 54 28 Op 3 13/0.000 + CDS 54995 - 55810 1101 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 55 28 Op 4 . + CDS 55807 - 56634 835 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 56 28 Op 5 . + CDS 56782 - 59301 2323 ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain + Term 59309 - 59359 14.6 - Term 59304 - 59339 7.1 57 29 Tu 1 . - CDS 59357 - 59629 316 ## gi|327536334|gb|AEA95168.1| choline binding protein Predicted protein(s) >gi|307679031|gb|GL456766.1| GENE 1 3 - 705 741 234 aa, chain - ## HITS:1 COG:no KEGG:EF3154 NR:ns ## KEGG: EF3154 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 234 1 233 236 306 72.0 4e-82 MKKKIMASLLVGSAVVGASLAPLSAQAVTTGNTPVQAEFEGGSLPDIGGDPNTVRPDPGA TNSNFDLLFIPREYDFGKLSISDDLTKSIPNKNDVGTNGHVEAVGVGDLRGTKEGWHVTA QSNGMKFDEESLEGNITTSSNSLYPLEYDVVNNYFRILDFTFLDPNTSPNLVNSDNWTLD LGGDAVLVSNASVGKGQGLWQFTMFRTSLNITTPAYEIKAGAYTGNITWNLVAG >gi|307679031|gb|GL456766.1| GENE 2 1101 - 1814 825 237 aa, chain - ## HITS:1 COG:lin1221 KEGG:ns NR:ns ## COG: lin1221 COG2188 # Protein_GI_number: 16800290 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 2 235 5 237 237 228 52.0 9e-60 MNKFHDIFLELEQQIVQGDYQPGDLLPSENQLVETYNVSRETIRKALNLLINAGYIQKKQ GKGSIVLNFKKFNFPISGVTSYKELQQTQHIESHTHVVSLEEIPVERNLAQLTGWTEGAP VWRLVRQREIEGEVDILDIDYLIKEIVPELPKHRAEDSIFDYLENDLGLAISYAQKEITV EPLTEMDKQLIGEVEGNHVVVVRSIMNLEDTRCFGYTESRHRLNKFKFVEFARRRKL >gi|307679031|gb|GL456766.1| GENE 3 2109 - 4820 2297 903 aa, chain + ## HITS:1 COG:L39593 KEGG:ns NR:ns ## COG: L39593 COG1554 # Protein_GI_number: 15672410 # Func_class: G Carbohydrate transport and metabolism # Function: Trehalose and maltose hydrolases (possible phosphorylases) # Organism: Lactococcus lactis # 118 880 6 746 769 517 39.0 1e-146 MTILELTFATNQLTTTFFNHKLEPLHQKTFPFEALTIEETVPELCQLIVAEAAPILGGIV ADFPEDFFSPEETLALVPQAVIQAFAEQLNTPLLTAAEQAAAPNLLAAFEEKRQYLAWHL DYYGYVPGKNEYAVESLLTVGNGFLGLRGTTPEMTISDDHYPATYIAGLYNTAASEVAGQ VVENEDFVNAPDNQHIALKIGDATDWLTISPDTLQQLHRQLNLKTGLFVAEMILKDADNQ QIKLTTKKIANMAQPNDYHLQYTFEPLNFSAPITLKTVTDGSVYNYNVARYRNLTAKHFQ VTALSAQENKTVIEVCTNQSNLSVRETALITGDFFEKEAIMIQEEAEKIAQVVTVMAHQG TRYTLEKQVFVQASHAEQSWQVPFTPRDSFAAAAQESARAWQTLWQQANITVTGDLMSQK LLRIHSYHLLASASPFSNQAQALDVSITARGLHGEAYRGHIFWDEIFILPFYIQHYPDTA KQLLLYRYHRLEKAKENAAASQYRGAMYPWQSGRDGRETTQKLHLNPLNGHWGEDHSILQ RHVSLAIAYNAWLYWHSTQDHEFMKQYGGEMLLEIAQFWNSAATLDDATGRFFIDKVMGP DEFHEGYPDQAESGLKNNAYTNLMVVWLFEELTNILALFSEEEQAQLFAKTQTSSADLAR MQQIQNSLEIEVNSDGIIAQYEGYFGLKEIDWAAMKEKYGNIYRMDRILKAEGESPDDYK VAKQADTLMLFYNLDKTRVDQILEDLGYQLPADYLEKNLLYYLKRTSHGSTLSRIVHAQL AEMAQFHELSWQLYQEALYSDYRDIQGGTTAEGIHTGVMAATIHVTLATYAGVDTRQNEL SICPNLPEHWQALAFQFIHQGVTYQFSLTQTSVTITADKDTQLLVQGALIPLTAERPKEV HYQ >gi|307679031|gb|GL456766.1| GENE 4 4835 - 5485 733 216 aa, chain + ## HITS:1 COG:ECs1896 KEGG:ns NR:ns ## COG: ECs1896 COG0637 # Protein_GI_number: 15831150 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Escherichia coli O157:H7 # 4 209 5 208 219 198 51.0 8e-51 MTIGFIFDLDGVITDTAKFHYQAWKALADSLGISIDETFNETLKGISRMDSLDRILAHGH RENAFTPAEKEALAQQKNDHYVQLLEHLTTEDVLPGVVSLLQQAQARHIPCAVASASKNA PLILEKLGVRAYFATIVDPDSLSKGKPDPEIFLAAADSIGVLPQNAIGFEDAQSGIDGLK AAGIYAVGLSASQPLIGADMQVSEMTELSVDALLNR >gi|307679031|gb|GL456766.1| GENE 5 5850 - 6368 223 172 aa, chain + ## HITS:1 COG:no KEGG:EF3160 NR:ns ## KEGG: EF3160 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 51 161 1 112 147 204 90.0 1e-51 MIEKKDFDTIRKAFLIYDNNFNNHMFTYTYQHRKTKKLLEMNVQFEAGNFMHLCGVDYYQ IDKQGSCKFRFKATQFYRALKNNKVSLRGIKPKDDGTTGQKLQVIPLLEMLISPGVRVCD GGKFYNLQYEKAIRSGKMIVALTCKENNKKVRPTIFIIVNKSATKEPIEIFN >gi|307679031|gb|GL456766.1| GENE 6 6685 - 6828 97 47 aa, chain - ## HITS:1 COG:no KEGG:EF3247 NR:ns ## KEGG: EF3247 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 47 19 65 65 78 93.0 1e-13 MSVLPKFTERRGLLSAYETIQTILGFGMFTIALIALIVKLLKNDNKK >gi|307679031|gb|GL456766.1| GENE 7 7236 - 7361 161 41 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKITERPIVKILIKILMFALCFYAGIKFVDFIFPLVGFKQ >gi|307679031|gb|GL456766.1| GENE 8 7825 - 8796 1130 323 aa, chain - ## HITS:1 COG:lin0238 KEGG:ns NR:ns ## COG: lin0238 COG0462 # Protein_GI_number: 16799315 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Listeria innocua # 1 319 1 318 318 464 75.0 1e-130 MSKHYFDPRLKIFSLNSNRPLAEKIADAVGVELGKCSVTQFSDGEIQVNIEESIRGAHVY VIQSTSSPVNDNLMELLIMIDALKRASAKTINVVMPYYGYARQDRKARAREPITAKLVAN MIEKAGATRMLTLDLHAVQIQGFFDIPVDHLMGAPLIADYFIEHGIQGDDVVVVSPDHGG VTRARKLAEFLKAPIAIIDKRRPKANVAEVMNIIGHVEGKTCVLIDDMIDTAGTISLAAN ALKEAGAKDVYASCTHPVLSGPALQRIEDSAIERLVVTDSIYLSDDRKIAKIDEVSVGEL IGDAIKRIHENKPVSPLFETKNK >gi|307679031|gb|GL456766.1| GENE 9 8971 - 9408 512 145 aa, chain - ## HITS:1 COG:SPy1055 KEGG:ns NR:ns ## COG: SPy1055 COG0229 # Protein_GI_number: 15675047 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Conserved domain frequently associated with peptide methionine sulfoxide reductase # Organism: Streptococcus pyogenes M1 GAS # 5 144 3 142 145 197 65.0 7e-51 MTKPTEEELKQTLTDLQYAVTQENATERPFSGEYDDFYQDGIYVDIVSGEPLFSSLDKYD AGCGWPSFTKPIEKRGVKEKADFSHGMHRVEVRSQEADSHLGHVFTDGPLQEGGLRYCIN AAALRFVPVADLEKEGYGEYLSLFK >gi|307679031|gb|GL456766.1| GENE 10 9541 - 10095 711 184 aa, chain - ## HITS:1 COG:BS_maf KEGG:ns NR:ns ## COG: BS_maf COG0424 # Protein_GI_number: 16079857 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Nucleotide-binding protein implicated in inhibition of septum formation # Organism: Bacillus subtilis # 3 184 5 186 189 167 46.0 1e-41 MQIILASQSPRRQELLKRVVPTFTIAPADIDETVGKDGLPAEYVAQMAAQKAAAIAEQSP EALVIGCDTIVALAGEILGKPTSREDGYRMLRLLSGKTHDVYTSVTLKQGEKERSATVHS TVTFYPLTDTEIHAYLDTAEYADKAGAYGIQGQGALLIEAIAGDYYAIMGLPIAKVARLL KEFN >gi|307679031|gb|GL456766.1| GENE 11 10120 - 12252 1955 710 aa, chain - ## HITS:1 COG:SPy2121 KEGG:ns NR:ns ## COG: SPy2121 COG0323 # Protein_GI_number: 15675871 # Func_class: L Replication, recombination and repair # Function: DNA mismatch repair enzyme (predicted ATPase) # Organism: Streptococcus pyogenes M1 GAS # 1 710 1 651 660 679 52.0 0 MGKIQELSEQLANQIAAGEVVERPASVVKELVENALDAGSTQIDIFIEEAGLKTIQIIDN GEGIAKEDVLNAFKRHATSKIHTRDDLFRIRSLGFRGEALPSIASVSEMIVETATAEEEE GSYVILKGGKVEENRPAALRKGTKMTVSNLFYNTPARLKYVKTIQTELANIGDIVNRLAL SHPKVAFRLVHDGHKMMSTTGNGDLKQTIAGIYGISTAKKMLKIEGKDLDFTLTGYVSLP EVTRASRNYLSTIINGRYIKNFALNKAIVAGHGSKLMVGRFPIAVLEIEMDPLLVDVNVH PTKQEVRLSKEKDLMALIEQAIQEVLSQEQLIPNAADNLRFKKKLPPEPKAEQMEIPLST EQPAVKQRPGSLSYNPATGRFYAEHATDETPASSAPEAVNQTERAVDPMDDPFAPPVPES TSVAEETSAYETSSAAVDSENHWETASNEQQVIAEETKITEVPDSEPSLRSSEAADEVFQ EEMKLHPEFDANSATSQRELKQALNKLEEERPTERFPELEYFGQMHGTYLFAQSKDGLFI IDQHAAQERIKYEYFREKIGEVSDDLQELLVPIVIDYPNSDALKIKEQKETLAEVGIHLE DFGQNSFIVRAHPTWYPAGEEESIVREMIDMLLTTGSVSVKKFREATAIMMSCKRSIKAN HYLNEQQARVLLKDLALCENPFNCPHGRPVLIHFTNSDMERMFKRIQDPH >gi|307679031|gb|GL456766.1| GENE 12 12284 - 14860 3007 858 aa, chain - ## HITS:1 COG:lin1440 KEGG:ns NR:ns ## COG: lin1440 COG0249 # Protein_GI_number: 16800508 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Listeria innocua # 5 858 2 859 860 994 60.0 0 MPQKTKNTPMMEQYLSIKAQYKDAFLFYRLGDFYELFYEDAINAAQILELTLTSRNRNAD DPIPMCGVPYHAAQGYIDTLIEQGYKVAICEQVEDPKTTKGMVKREVVQLVTPGTVMNSK GLEAKDNNYLTAVLTDGNQFGFAYVDLSTGELKTAVLADEEGVLNEASALQTKEMVLGSG IPESLKENLSLRLNIIFSTQETVEENAEFSFLTNELINPLEIEITGKLLSYLSVTQKRSL SHIQKAVEYQPDHFLKMDHYSKFNLELSQSIRTGQKKGTLLWLLDETKTAMGGRLLKQWL DRPLIQERQIKARQEMVQSLLNAYFERLDLQAALTNVYDLERLAGRVAFGSVNGRDLIQL RTSLEQVPTIRQLIVGINQGEWDDLLVDLNPVEDLVALIATAINEEAPLQITEGNVIKDG YNDQLDEYRDAMRNGKQWLAELEAKERQETGIKNLKIGYNRVFGYFIEITKSNLANLEEG KYERKQTLANAERFITPELKELERLILEAEEKSVELEYQLFLAVREQVKTNIDRLQTLAK TISAVDVLQSFATISERYQYVRPTLRSNTKNLAIVEGRHPVVEKVLGHQEYIPNSIRMNP ETDILLITGPNMSGKSTYMRQLALTVVMAQIGCFVPAESAEMPIFDQIFTRIGASDDLIA GQSTFMVEMMEANQALRHATPNSLILFDELGRGTATYDGMALAQAIIEYIHREVQAKTLF STHYHELTVLDETLKGLKNIHVGAVEKDGEVVFLHKMMEGPADKSYGIHVAKIAGLPSPL LERAATILSALEAEETTIPSSVHHEEVSEVHEETEQLSLFKEVSTEELSVIDTLKKMNLL EMTPLDALNMLHQLQKRI >gi|307679031|gb|GL456766.1| GENE 13 14861 - 15232 546 123 aa, chain - ## HITS:1 COG:no KEGG:EF3168 NR:ns ## KEGG: EF3168 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 123 1 123 123 170 100.0 2e-41 MEPLNLDAQSNKELEKLLHLIGQDEVIQRYQAIEEKVKKNKKLTELVEEIKAAQKDAVQF AHYGKPTAEKEAIQRADAKTKEFDEHPLVVAYREQLIEANDLVQHVTALIQYRVNEELEK EGN >gi|307679031|gb|GL456766.1| GENE 14 15320 - 16117 1025 265 aa, chain - ## HITS:1 COG:lin1438 KEGG:ns NR:ns ## COG: lin1438 COG1692 # Protein_GI_number: 16800506 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 263 1 264 267 380 67.0 1e-105 MRILFIGDVVGSLGREALATYVPKLKKKYRPQVTIANGENAASGRGITGKIYKKFLQDGV DVVTMGNHTWDNKDIFEFIDDAKKMVRPANFPEDVPGQGMVFVKVNQLELAVINLQARTF MVPLEDPFKKAAELVAIARKRTPLIFVDFHGETTSEKQAMSWFLDGQVSAVVGTHTHVQT NDARILPKGTAFLSDVGMTGPYDGILGMKREPIIEKFMTALPKRFEVVETGRTILSACIL EIDDQTGQAKMIEPIQISEDRPFQE >gi|307679031|gb|GL456766.1| GENE 15 16277 - 17833 2166 518 aa, chain - ## HITS:1 COG:lin1436 KEGG:ns NR:ns ## COG: lin1436 COG1418 # Protein_GI_number: 16800504 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Listeria innocua # 1 518 3 520 520 608 73.0 1e-174 MVLNILLAIVGLIVGLGLGFVIAKSRHDKAINGAKISASSILENARKESETLKKEALLEA KEENQKYRSEIESELKESRLELKSQENRLIQREQTLDRKDDSLEKREGSLEEKEEKLGAR QQLIDEREKEVENLINQQHQELERIASLSKEEAKSIIMKSTEEELNHELTLMVKESEQRA KEESDRKAKNLLSLAIQRCAADSVSETTVSVVTLPNDEMKGRIIGREGRNIRTLETLTGI DLIIDDTPEAVVLSGFDPIRREIARMTLEKLIQDGRIHPARIEEMVEKSRKEMDERIREY GEQAAFEVGAHTLHPDLIKILGRLRFRTSYGQNVLNHSIEVAKLAGVLAAELGEDVQLAK RAGLLHDIGKALDHEIEGSHVEIGAELAAKYKENSVVINAIASHHGDVEATSVISVLVAA ADALSAARPGARSESLENYIRRLENLENISNSFEGVDSSFAVQAGREVRVMVKPEEISDL ESVRLVRDIRKKIEDDLDYPGHIKVTVIRETRAVDYAK >gi|307679031|gb|GL456766.1| GENE 16 18230 - 19276 1576 348 aa, chain - ## HITS:1 COG:lin1435 KEGG:ns NR:ns ## COG: lin1435 COG0468 # Protein_GI_number: 16800503 # Func_class: L Replication, recombination and repair # Function: RecA/RadA recombinase # Organism: Listeria innocua # 3 346 2 344 348 508 79.0 1e-144 MADDRKVALDAALKKIEKNFGKGSIMKLGEKADQKISTIPSGSLALDVALGVGGYPRGRI IEVYGPESSGKTTVSLHAIAEVQRNGGTAAFIDAEHALDPQYAEKLGVNIDELLLSQPDT GEQGLEIADALVSSGAIDIVVIDSVAALVPRAEIDGEMGASHVGLQARLMSQALRKLSGS INKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKQGTDIVGNR TKIKVVKNKVAPPFKVAEVDIMYGQGISQEGELLDMAVEKDLISKSGAWYGYKEERIGQG RENAKQYMADHPEMMAEVSKLVRDAYGIGDGSTITEEAEGQEELPLDE >gi|307679031|gb|GL456766.1| GENE 17 19390 - 20634 214 414 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 268 406 759 898 904 87 38 2e-16 MKAEIIAVGTELLLGQVVNTNATFLSEELAALGIDVYYQTVVGDNGGRLETLLTEAEQRS DLIVLCGGLGPTEDDLTKQVVAQHLHKSLVEDQEGLNRLHQFFQQSKRPMTENNLRQVLA IEGGQVLQNPTGLAVGSFVTEGTTSYLLLPGPPNELIPMFQQAARPLLINAFPQEEQLIS RVLRFYGIGESQLVTEIQSLIAHQTNPTIAPYAKPNEVTLRLTVKTKDLVAGEELLTATE EKVLAKVGDYFYGYGDDNSLAKVTVDLLLQNGQTVTAAESLTAGLFQSTLGEIAGASKIF KGGFVTYSQETKENFLGISHELLEEHGTVSEACAKEMAEKARQLAKSNYGLSFTGVAGDP IEGQPTGTVWIGLAEEGQPTVAECFHFNRDRNYIRQSAVMRGLDLLRRRIINKK >gi|307679031|gb|GL456766.1| GENE 18 20826 - 22025 1532 399 aa, chain + ## HITS:1 COG:no KEGG:EF3173 NR:ns ## KEGG: EF3173 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 20 313 20 313 401 390 99.0 1e-107 MSVVLGLLGLLGLLVSGGLTIKALIKKQPKKQYGYAALASAALFIGGVATTDSSPTLSLD AESVETDANGSATIKGEYDGNSKLTANGKEVKTKDKTFAYKVKLSDEKTQKITFVAEKKD TKVEKSVEVTPSKEFIASITDSEQELAKTEKALAHAEKQPSQKNYDEAATLVSSLSQEYE EYNDRLEKIKEAVPVDEAVTTAEKSKSKSDYQAAEKLVAAAPVGKEGFQQRLTTVQTAIA EKEKNEQLVASATAAVEKAEQEPTNEAYYNEAIKQIDALNSPNQALTKRVAVVKTQLDAH KEKQRKEAEAQKLAAEKAQKEQAEAAAKAQAEAEAQQAAQAPAEVETAAANAGPETSATV LVTPTGSKYHARKCGNGTYTATTLADAQARGLTPCSKCY >gi|307679031|gb|GL456766.1| GENE 19 22105 - 22725 894 206 aa, chain - ## HITS:1 COG:BS_ywnB KEGG:ns NR:ns ## COG: BS_ywnB COG2910 # Protein_GI_number: 16080715 # Func_class: R General function prediction only # Function: Putative NADH-flavin reductase # Organism: Bacillus subtilis # 1 204 1 208 213 192 50.0 4e-49 MKVAVLGATGKEGQLLLAEAKRRGMDVTAIVRNASKITDGTPTIEKDVYQLTTEDIQAFD VLISALGFPDVQDFPKSTQHLIEILTNQKTRLFVVGGAGTLYVDPEHTTQLKDTPSFPAE IQPLASAMGEALNLLKEAQNIHWTYISPAAMFDAEGPATGHYEVAGEELTTNSQGDSYIS YADYAVAMLDEVESNAHPNQRISVYQ >gi|307679031|gb|GL456766.1| GENE 20 22793 - 23218 557 141 aa, chain - ## HITS:1 COG:BS_ywnA KEGG:ns NR:ns ## COG: BS_ywnA COG1959 # Protein_GI_number: 16080716 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Bacillus subtilis # 3 135 2 132 133 116 50.0 1e-26 MAMSTKLSVAIHILSLIETGPQEQVTSEYIASSVNTNPVVVRRLMSQLKKAGLIHSMRGA NKNTLLKKPEEISLYEIYTAVELEREIFNIHQNPNPNCSVGANIQSVLETEFTKVQQKME EELKSITLADVIHEIEVKRDK >gi|307679031|gb|GL456766.1| GENE 21 23307 - 23690 340 127 aa, chain - ## HITS:1 COG:VCA1051 KEGG:ns NR:ns ## COG: VCA1051 COG3304 # Protein_GI_number: 15601802 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Vibrio cholerae # 1 119 2 130 143 95 44.0 2e-20 MKTLGNILWFIFGGFFGGLSWLFAGVIWCITIIGIPIGLQCFKLAGLSFWPFKKRVVYSD SGVSLVVNIIWLIISGLPLAIGHCISGLLLCLTIIGIPFGQQSFKLAKLALMPFGARVVS TTDFYFE >gi|307679031|gb|GL456766.1| GENE 22 23854 - 24645 878 263 aa, chain + ## HITS:1 COG:no KEGG:EF3177 NR:ns ## KEGG: EF3177 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 263 1 263 263 487 99.0 1e-136 MDLHLTVDLKKTKTLIDLADQAHLIIEQTTKLPKKEAAILFLLRDNQLVALGLAEEKATY KEVSFDHSILLKPTWDTELAYLAQAFLDDAKESGLTLEATPATVKIPKSAVATVTNYKET VTFILERFGYSLFKKPAPKKARPAKARHKWTKEVSQIPFYIDTRQSKATVFWQKRNEMLI KAGATMMPEAPLNKDGSVGFSARFGEKLRDERKGQFKDFVTTEDIVLKSVNEVGLFLYFA GTNSWLELVDENGKTLNEWTVVE >gi|307679031|gb|GL456766.1| GENE 23 24698 - 25834 1484 378 aa, chain - ## HITS:1 COG:lin0289 KEGG:ns NR:ns ## COG: lin0289 COG0624 # Protein_GI_number: 16799366 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Listeria innocua # 1 377 1 378 378 381 55.0 1e-105 MEKSEKISILQDVVKIKSVNGNEEEVAIYLQNLLKKYEIPSELVSYAPNRSSLVAYLGEN REKVLGFSGHMDVVSEGDESQWTFPPFAAHIEGNKLYGRGATDMKSGLVAMVLAMIELKE KEVPLNGAVKFLGTVGEEVGELGAGQLTEKGYADDLSALVIGEPTNYNLMYAHMGSINYS VVSHGKEAHSSMPEEGINAINNLNEFITEANQQMAEVTANYENPELGRTIHNVTVIKGGT QVNSIPGQAALQGNIRSIPEFSNDQVIALLQKIVDELNKKEKHQLELTIDYNKIPVKAEK DSALIQAIQAQFDQPLPLVTSAGTTDLAEFTKSDNTFDCVVFGPGVTTTAHQVDEYVEID NYLDMIDKYQAIAKSYLN >gi|307679031|gb|GL456766.1| GENE 24 25964 - 26848 828 294 aa, chain - ## HITS:1 COG:no KEGG:EF3179 NR:ns ## KEGG: EF3179 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 294 1 294 294 528 99.0 1e-149 MEDFVKSVVKNFSKEYRQQPLPTDLQAEVKARFHKEKKRYTWLRFRNRSLQSSLVVACGF VLSVNLFPGFSEAARNIPVLDKIVQLVTIKTLTAKKQESEVNIDVPKIQTSQESSVADTL NKKYLKEAQTEFQQVKGQLFDGSRVSVTGDYEKVVDDRRFLVVKRTFTEIKGSSATTTKY DTIDKRANVVVSLPLIFKNDFYIDVISSEIKQQISDQMKNDSNKIYWSEKEDAPSDVQPF KKIKKDQPFYINEKHQLVIVFPQGEIAPYYMGTPEFVIPNQVIENELAAPNYLK >gi|307679031|gb|GL456766.1| GENE 25 26873 - 27370 569 165 aa, chain - ## HITS:1 COG:BS_sigV KEGG:ns NR:ns ## COG: BS_sigV COG1595 # Protein_GI_number: 16079766 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Bacillus subtilis # 7 161 2 157 166 88 33.0 6e-18 MVFDGWKRKKQIRALETLVDTKYEKMYRIAFNYTHSKEDALDVIQESFEKALKAIQKGPD IKDFEAWFFRILLSVATDYWRKKKREAVHIEKDEHVLALLNNPQRSFLEIEEIINQLDSP NREIILLKFFEGFTLKEIALILDINENTIKTKMYRSLNELRSLLN >gi|307679031|gb|GL456766.1| GENE 26 27607 - 29079 857 490 aa, chain - ## HITS:1 COG:no KEGG:EF3181 NR:ns ## KEGG: EF3181 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 480 1 480 483 866 99.0 0 MMFLNKVDKRKIALFQLLENAPMLTESKETVMQELELSEFIVNKTVAELNADFIEFGLSE DFQIVSDGIFLTLNESGTETSATLIDCYIKESLRFAMFQDFFFQRFDSVNEFALEHFVSH TLAYKEFKELKKMLENYQITINKEFHLVGNETNLREVTTLVFLQLYQRDFSLYGKKVLEQ IRNFELFFSEKVHLNQRAGYAQAKCFHFLAVSLVRTQQQFYVEKKVDSQVLKQLAGDNQQ NVFNWLESLQVPEPQRTNEGNYLLLFLIAEEWLQVASAALCQRFAEIQQLNRDLLSYLKI QFQLSEEVLQGFEQKVTIVHFKLFHFPIEANYSYRKMDITYFAETYTEYFSASRQFIQEQ KTNPAVWDARQFLFYRYLLLMVDALPLKKVLAPITLCVDFSFGEAYNRMIQKNIEKITEW NIIFKAHVDESVQLILSDIHFVDWPEITQIIWLAPPRPVDWSHFIKTLSALRPHSGEENK VGTAPLSSEK >gi|307679031|gb|GL456766.1| GENE 27 29063 - 29548 503 161 aa, chain - ## HITS:1 COG:no KEGG:EF3182 NR:ns ## KEGG: EF3182 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 161 1 161 161 219 100.0 3e-56 MRKKYLFLFSSLLIFTAVEIEPIQTLATPIYNPLEPTEEIQPKPESITPQEKSEPEQPAP TPPEDQKTTVPSEEKKPSPKKKDKPVEKPAMSKEKKKQTKETTAHPLQVNKDFVFPNGLG AGGDEESESYLAAVGYFLSGNGLYGKKMDVREVYDIDDVFK >gi|307679031|gb|GL456766.1| GENE 28 29653 - 30726 1131 357 aa, chain - ## HITS:1 COG:no KEGG:EF3183 NR:ns ## KEGG: EF3183 # Name: not_defined # Def: cell wall surface anchor family protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 357 1 357 358 634 100.0 1e-180 MNRWKVYATVIACMLFGWIGVEAHASEFNFAVTPTIPENQVDKSKTYFDLKMAPGAKQTV EIQLRNDTDEDITIENTVNSATTNLNGVVEYGQNGIKPDKTLRFNLKDYVEAPKEIILPK HSQKTLPLTITMPKDSFDGVMAGGITLKEKKKETTTSADQSKGLAINNEYSYVVAIILQQ NETKVQPDLKLLGVKPGQVNARNVINVSLQNPQAAYLNQLHLINTVSKGGETLYQSDTED MQVAPNSNFSYPISLKGERLTPGKYVLKSTAYGVKDEKGTYQVKGANGEERYLYKWEFTK EFTISGDVAKELNEKDVTIKGTNWWLYLLIALIILALLLLIFFLYRKKKKEEEQQSE >gi|307679031|gb|GL456766.1| GENE 29 30838 - 31596 1105 252 aa, chain - ## HITS:1 COG:no KEGG:EF3184 NR:ns ## KEGG: EF3184 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 252 1 252 252 367 100.0 1e-100 MKKTKVMTLMATTTLGALALVPMSALAVDGGEYQTNGAIQFAPNTNPTNPVDPTNPDPDK PITPVDPTDPTGPKPGTAGPLSIDYASSLSFGEQTITSKNMTYYAETQKYKDNAGADQEG PNFVQVSDNRGTETGWTLKVKQNGQFKTEANQELTAAKVTLSNGRVVSASQSAKPTTAPA TIELNPTGAESVVMAAGDKEGAGTYLMSWGDSVDTAKTSISLEVPGSTTKYAKKYTTTFT WTLTDTPANTGN >gi|307679031|gb|GL456766.1| GENE 30 31597 - 32397 977 266 aa, chain - ## HITS:1 COG:no KEGG:EF3185 NR:ns ## KEGG: EF3185 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 266 1 266 266 457 99.0 1e-127 MKKTVVYSLLFGTMLLGATVPAEAATVVFDSEQSIVFTPSTDGTDPVNPENPDPEKPVRP VDPTNPDGPNPGTPGPLSIDYASSLDFGSNEISNKDQTYFARAQTYKNPDGSASELATAN YVQVSDLRGTNAGWVLKVKQNGQFRNAETLHKELTGAIVAFTEPSVRSNATDVLPPTATA NIQLDAAGAETVVMQAPEKTGAGTWITLWGQAEKVTEKNQQGQQVNATITRAISLTVPGK TPKDAVQYKTTLTWLLSDVPVNNGGK >gi|307679031|gb|GL456766.1| GENE 31 32402 - 33136 1046 244 aa, chain - ## HITS:1 COG:no KEGG:EF3186 NR:ns ## KEGG: EF3186 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 244 1 244 244 405 99.0 1e-111 MKKTVLAVVGIVGFSGVLATQQAFAEDINVNYTSNGAITFEPDTDPTKPVNPTNPDEKVE PEDPTDPTGPKPGTAGPLSIDYASSFQFGAQKITSDTKDYYAQIQTFKDGTTGPNYVQVT DKRGTQEGWTLSAVQNAQFKTAQNEELVGAALSIANAGVTSIVDAAYAPTPTAAHTFVPG TEVELVKAEDGKGMGTWVYRFGKDATEGATAVKLNVPGKAIKLAKEYRTTLTWTLKSVPT NVGG >gi|307679031|gb|GL456766.1| GENE 32 33093 - 33482 210 129 aa, chain - ## HITS:1 COG:no KEGG:EF3187 NR:ns ## KEGG: EF3187 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 129 1 129 129 212 100.0 3e-54 MKKYLLLSCFLGLFSFCHSDTAFGEAAYENSGVVSFYGTYEYPTEESTTATSNSSTTTEP TKPADGGASSVLSSGVYGSRQGRLPATGTTNQAPFIYLGISLITIGILFIKRRREDEKNS ISSSRDCRI >gi|307679031|gb|GL456766.1| GENE 33 33502 - 38349 5619 1615 aa, chain - ## HITS:1 COG:no KEGG:EF3188 NR:ns ## KEGG: EF3188 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 63 1615 1 1554 1554 2167 82.0 0 MKKKIAVLLATCLLVQPFLSVSAWAIEGEQQTERTQTQPKTAETSTSEATKESSAHSIEQ SSMTESSAITEKVTTSSTETKPSEEQKQITLTFETTDQALFLNDAKSYQVVKEKNQPLRT EELPKWANSEENATFVGWSYQGKTYTNEELLQLEFSEDTQLTAVFKQKLTRMARAVSVDQ SIADTIAPADKTKVIVVPSPAGDGAAYKEYASTEAGLKEALFDLYQQGNNGDFTLYIGNN ITTSAATTAKVIPDTVTASNMTFYALQGKVNHLVITGNSADPISMDTTLPTGSKTLALGI VHFGTDITLRNISYTGSQMYLNGHSLSLNGGSIGNGFSVFGGTDSGDVTGNPVITVNSTG SGTWYFYGGNNNGGTLKGNPTLLINNTVSGINTLSGGANLGTVDGNVTVSVKRINGALSN YYGAGIGTAANPISVTGSVSNELDIAAEANSSFRMSTYYGGALYGNINGTIKNSLSGYGG WSSRGPYVGGSGRGNIGTNRGTNAISTTLDASNYTTYGPSIIGANRYNGTITGNIENTVI GGTTAAQGGIGNFDGGSGTEADRLSKAALGASNEGIYDAYTSEQRAKLAFDSATYKILGN IHSHLVKGSFGNADLWRTTAAGVGGYVEGKATIEVGTQTGDGTAGGDGLVYKGSRPTDTN YSSSRNNLANAKDFDIAGGGLVIGRDAWTIYIRGESNTVINNAVARRTYGGLFSGVVEGN TSNTLNGGIVDTLEGSGYEGGRVYGNAQATVRNGQVDWFLSGGGWNDKKIVGNVGVTVYD GVINASMGASYGASSDHTVTGNSNNIVYGGDFSGTPREGTNGFSGGITNVGSLLGNANLT IDLRNYNREFKLPSGTSISGGVPYNGTTNLGTDDSNTITLNIYTKPGSDVLNGAAIYGDG ARTSSYTKSGKIIMNIQATGSSIGNLYATNYGNAPTTGLLRDVEINLQGAKTINGLSGGN ATDSFTNTIVSKNAQKVVINIGENVDGTNNYQTEPLNATGLGVVNFTELNVTNGIKLMAN GGNIKNGVSATAANHSTTYNEFGSIHLSKNAGIGITNTANLISASKLTVQDHATLETIPG TGKVNIADFEAVDPTKDELLWIKPTTDTTALVDSTGTWFGNVKAYQVLTINPTVNNATKL MPTTFHGIEKATGKTFIGDNDVTKGANGYGIAIPGSIIDYEVETPGIVAGAGTISHDVKE VKAGNAPLTLQAWGTEVAGQKVQKGRLMIPTSSALTPTLSFLPDEVTGSWLHQGTVKSSE VGSAIEQIPEQKDTTPLSWKATNMNYSYQVKVQFSNKVELSGQSVIVTEDEAAQLTTVDK VIEMLGAKGRPFFKTSLKETDLPQIQAPLAEKTVSRTHDIQLEAGTSGDNLQNKTVHLVV VKNESVLAKDRSFALYATSAHLKLKEANGLTNSDELAQWTQATVIFADGRANQTPSLDAA TFQAIQQAKPEELAKTVPANYQFTEAGETLNKKVNVSISGELTLEKVPKTIDFGKQKISA KPEVYWPTLSDDLVVQDTRGTESTPWKLNVQVTNPLTNGTDQLEDLSLVTDKGEFLLNKG DTVVTENEGSGSGSYTINQGWGAANQRGLKLSVPVEKQKVGEFKGTLSWSLVMAP >gi|307679031|gb|GL456766.1| GENE 34 38724 - 39737 957 337 aa, chain - ## HITS:1 COG:SA0610 KEGG:ns NR:ns ## COG: SA0610 COG0657 # Protein_GI_number: 15926332 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Staphylococcus aureus N315 # 60 334 50 318 347 153 31.0 6e-37 MKRKIVRFILWLLGIIVVICLGVFLAFQLSPKPGAWVINQLFAGEVEIKDSASYDKALPN VQLQENQTYPSSRKKNTFDLYYPQTSKQAVPVVLWVHGGGYVGGDKSGMKEFATRLVADS SVAFISMNYELAPDAPYPSQLQQVDELVQFLLEKKQAYPMLDLSKLFIGGDSAGAQIALQ YATVQTNANYAKELGMTAALPASHLKGTLSYCGPVDLKQMANQQSDNRFMKFFVKTVAWS LLGTKDWQTSAELQEVSLVDKATKEFPPTYLTDGNSFSFQEQGLALVQRLKTLNVPVSAL FFKDKKATITHEYQFDYQTKEAKQCYQETVQFVNTYK >gi|307679031|gb|GL456766.1| GENE 35 39903 - 40448 576 181 aa, chain + ## HITS:1 COG:BS_yueJ KEGG:ns NR:ns ## COG: BS_yueJ COG1335 # Protein_GI_number: 16080227 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Bacillus subtilis # 2 180 3 181 183 238 59.0 3e-63 MKALISIDYTNDFVATDGKLTTGAAGQAIETALVQQTKHYFDNGDFVVFAIDGHAPLDRY HPENKLFPPHNVLGTDGRNLFGSLADFYQAHKNEASVYWMDKRHYSAFSGTDLDIRLRER GITELCLTGVCTDICVLHTAVDAYNLGYQLMIPERAVASFDEQGHEWALRHFKQTLGATI L >gi|307679031|gb|GL456766.1| GENE 36 40645 - 41328 1071 227 aa, chain - ## HITS:1 COG:BS_ysbB KEGG:ns NR:ns ## COG: BS_ysbB COG1346 # Protein_GI_number: 16079942 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative effector of murein hydrolase # Organism: Bacillus subtilis # 1 226 5 230 231 241 66.0 8e-64 MNPYVGIIISLAVFGIGTWLFKKSKGFFLFTPLFVAMILGVVVLKVTGISYEQYNEGGKY ISFFLEPATVAFAIPLYKKRDVLKKYWLEILTALTIGSFGSLVAVYFAGKVIGMDNHLVA SILPQAATTAIAVPISQTVGGIASITAFTVIFNGVLTYALGRIALKWFKINNPIAKGLAL GAAGHALGVAVGMEMGETEAAMASISVVVVGVVTVLVVPFFATVIGL >gi|307679031|gb|GL456766.1| GENE 37 41325 - 41744 486 139 aa, chain - ## HITS:1 COG:BS_ysbA KEGG:ns NR:ns ## COG: BS_ysbA COG1380 # Protein_GI_number: 16079943 # Func_class: R General function prediction only # Function: Putative effector of murein hydrolase LrgA # Organism: Bacillus subtilis # 3 134 4 135 146 112 58.0 3e-25 MEKKVYSFLQQAAVFAIIMLIANGLAFISPIPMPASVIGMVLLFIGLCTKVVKLEQVEGL GNSLSTVITFLFVPSGISLVNSLGIMQQFGVQIVFVILVATLALLATTGWTGAFLLHMKD ARKEKEPAATKKAKGEVRA >gi|307679031|gb|GL456766.1| GENE 38 41896 - 42624 825 242 aa, chain - ## HITS:1 COG:BS_lytT KEGG:ns NR:ns ## COG: BS_lytT COG3279 # Protein_GI_number: 16079944 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Bacillus subtilis # 1 239 2 239 241 202 45.0 3e-52 MHVLIVDDEPLAREELSYLVSQHPQVTSVAEADSVAEAMEEMMDQKPDLLFLDIHLTDES GFDLAEKLTHLKKAPYLVFATAYDQYALKAFQVNAKDYILKPFEEEKITQVIEKASKEMA QAVPENTAEKGPKSEAIPIQGEDRIYLVAPEDIYLVSVEERQLSIFVDQQVYKMTGTLNS IEQKLPATLFIKTHRSFILNRTKIQEIQPWFNNTLQVILTNGSKVPVSRSYVKEFKEKLG LS >gi|307679031|gb|GL456766.1| GENE 39 42605 - 44374 1586 589 aa, chain - ## HITS:1 COG:SA0250 KEGG:ns NR:ns ## COG: SA0250 COG3275 # Protein_GI_number: 15925963 # Func_class: T Signal transduction mechanisms # Function: Putative regulator of cell autolysis # Organism: Staphylococcus aureus N315 # 1 582 1 582 584 623 55.0 1e-178 MVELFILMMERVGLIILLAFLLVNVPYFKRVLLSREKMSSKVQLILIFGLFAIISNFTGI EIAKNQIVPNNLLTYLSSNASIANTRTLVIGVSGLVGGPIVGSAVGLIAGFHRVIQGGGH SFFYVPASLIVGLIAGFLGSRMAKQTVFPSAGFSAIVGACMEMIQMIFIFFFSGDLSDGA TLVRFIALPMILLNSVGTFIFMSILTTTLKQEEQAKAVQTHDVLELAAETLPYFREGLNK NSSKKVAEIIKHYTKVSAISMTNSHQILAHVGAGSDHHIPELEVITELSREVLRTGRMTI AHAKEEVGCSDPNCPLQAAIVIPLFSHQQIVGTLKMYFTDPAQLTHVEEQLAEGLGTIFS SQIELGEAEVQSKLLKEAEIKSLQAQVNPHFFFNAINTISALMRKDSEKARKLLLQLSKY FRGNLQGAVQTTIPVSQELEQVKAYLSLEQARFPNRYQVTFDVEEAVASEKVPPYAIQVL VENTIKHAFGSRKENNQVRVVVKAKQHKLHVDVYDNGQGIPEERRLLLGKTTVTSEKGTG TALENLSRRMANLYGSEGCFLIENLETGGSHVHLEIPMEQEELDARINR >gi|307679031|gb|GL456766.1| GENE 40 44466 - 45284 1096 272 aa, chain - ## HITS:1 COG:Cj0772c KEGG:ns NR:ns ## COG: Cj0772c COG1464 # Protein_GI_number: 15792110 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Campylobacter jejuni # 34 272 24 257 257 142 38.0 6e-34 MKKFYLATFAVIATVILAACGGNKQADQKEDKEITVAVQLESSKDILEIAKKEAEKKGYK INIMEVSDNVAYNDAVQHDEADANFAQHQPFMEMFNKEKKADLVAVQPIYYFAGGFYSKE YQDAKDLPENAKVGIPSDPTNEGRALAILNANGVIKLKEGVGFNGTVADVVENPKNITFE SIDLLNLAKAYDEKDIAMVFCYPAYLEPAGLTTKDAILLEDEEASKHYALQVVTRKGEKD SEKIKVLKEAMTTKEVAEYIKKNSKGANIPAF >gi|307679031|gb|GL456766.1| GENE 41 45297 - 45968 797 223 aa, chain - ## HITS:1 COG:STM0512 KEGG:ns NR:ns ## COG: STM0512 COG2011 # Protein_GI_number: 16763892 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Salmonella typhimurium LT2 # 12 222 6 216 219 120 42.0 3e-27 MTFSETFAEYWPSMLIGLKETGIMMSISMAICLLVGLPLGLGLFLANPKVKGHQPWLYWV LNFIVTVIRSFPYLLFVIALIPVTRSVLGKAFGPIPSSVPLSIVAIAIFARLVEQVLLDV PEEIYFLANSLGTSKVQYIWHFLLVEARSGLVLAYTTTTVSMVSYSTVMGVVGGGGIGDF AVRVGYQRYEYGIMYVAIVIMIALVFILQMLGNFIAQKLDKRK >gi|307679031|gb|GL456766.1| GENE 42 45965 - 46687 367 240 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 227 1 230 245 145 36 4e-34 MIELVNVSKVYQETHALKNIHFSVQPGEIVGIVGKSGSGKSTLLRLLNLMEQPSEGEIRI DGRNVQTFSKKEVRQQQQQMGMVFQHYNLLENLKIYDNVALPLKLLKEKQPEKIERLLTF VDMAHKAEAYPAQLSGGEKQRVSIARALSRNPKWLLCDEATSSLDEENTESVVRLLHKTH QEFRPTIFFVSHELETVKRLCNRILVMEKGQLIGEFLNNPQQYEEEPLSYLEKVERSLRP >gi|307679031|gb|GL456766.1| GENE 43 47049 - 47441 294 130 aa, chain - ## HITS:1 COG:lin0902 KEGG:ns NR:ns ## COG: lin0902 COG1765 # Protein_GI_number: 16799975 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Listeria innocua # 5 129 1 126 126 83 35.0 9e-17 MVERLTIIRGVEKFELQTKTARWVLAKEEGYSPVQMLVSAIGACGGYVYQSVLENSHIPF EFEKIEVTYSREVERRAQPLKQVTIIFYVSVPEAFQERATRCLKLVSPNCPVIQSLAERI TVEETVVFKK >gi|307679031|gb|GL456766.1| GENE 44 47648 - 47917 457 89 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29377650|ref|NP_816804.1| 30S ribosomal protein S14 [Enterococcus faecalis V583] # 1 89 1 89 89 180 100 1e-44 MAKKSKIAKAKKQQAMIAKYAPIRQALKEAGDYEGLSKLPKDAHPSRLKLRDQTDGRPRG YMRKFGMSRIRFRELAHQGLIPGVKKASW >gi|307679031|gb|GL456766.1| GENE 45 48028 - 48177 247 49 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29377651|ref|NP_816805.1| 50S ribosomal protein L33 [Enterococcus faecalis V583] # 1 49 1 49 49 99 100 3e-20 MRQTITLACAETGERLYLTSKNKRNTPEKLQLKKYSPKLRRRALFTEVK >gi|307679031|gb|GL456766.1| GENE 46 48193 - 49167 1048 324 aa, chain + ## HITS:1 COG:all1751 KEGG:ns NR:ns ## COG: all1751 COG0523 # Protein_GI_number: 17229243 # Func_class: R General function prediction only # Function: Putative GTPases (G3E family) # Organism: Nostoc sp. PCC 7120 # 3 315 10 318 323 164 30.0 3e-40 MGIPITIVSGFLGAGKTTLINHALAQSPFPKEEIIIIENEFGQTGVDHALLLQTTERIIQ LNNGCMCCSLRGDLLASLSAILEVYQEEQQPIAQVILETTGIADPQPIIQTILTTPHIKN HFYIDSLLTVVDGHHWQQQLQEAEAIKQLALADRLFFSVKEPADITQLPTFQETLRTINP FADILSFQANEPLLASDFFQLNKFTATLTEHEMTHSPHEHAHEHHHHTFHSLTLTASSAL NEPLFTRWLDWLMYTHQEKLYRFKGILALQEHDLAIAMQGVNQQVAFQMTNQPPQETTIV LIGKELETKKIQETFQTLNKIATP >gi|307679031|gb|GL456766.1| GENE 47 49201 - 49323 131 40 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEKTDLSSAYRRLKSPNIKTRKRALKIIKEHKRNKQKKIA >gi|307679031|gb|GL456766.1| GENE 48 49344 - 50879 1625 511 aa, chain + ## HITS:1 COG:SPy0714_1 KEGG:ns NR:ns ## COG: SPy0714_1 COG0803 # Protein_GI_number: 15674772 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Streptococcus pyogenes M1 GAS # 1 319 1 322 322 322 52.0 1e-87 MKKFTLPLLAALSLILFGACGKTNTSDKTADGKEKLSIVTTFYPMYDFTKNIVGDEGDVK LLIPAGSEPHDYEPSAKDMATIHDADVFVYHNENMESWVPKAAKGWKKGAPNVIKGTENM VLLPGSDEDGHDHDHEHGEEGHHHELDPHTWVSPHRAIQEVTNIKEQLVKLYPKKAKTFE TNAEKYLTKLTALDKEFQTALKDAKQKSFVTQHAAFGYLALDYGLKQVPIAGLTPEQEPT AGRLAELKKYVTDNQIRYIYFEKNANDKIAKTLADEANVQLEVLNPLESLTQKQMDNGED YLSVMKENLTALKKTTDTAGKEVQPETSEKTEKTVANGYFKDSEVAERTLADYAGNWQSV YPLLKDGTLDQVFDYKAKLKKDKTPAEYKTYYDAGYQTDVDHINITDSTIEFLVDGKPQK FTYKAAGYKILNYAKGNRGVRFLFETDDANAGRFKYVQFSDHNIAPTKAAHFHIFFGGDS QESLFNEMDNWPTYYPNDLSKQEIAQEMIAH >gi|307679031|gb|GL456766.1| GENE 49 50937 - 51911 1033 324 aa, chain - ## HITS:1 COG:BS_yfjN KEGG:ns NR:ns ## COG: BS_yfjN COG0042 # Protein_GI_number: 16077870 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-dihydrouridine synthase # Organism: Bacillus subtilis # 1 320 1 320 325 490 76.0 1e-138 MSKNFWATLPKPFFVLAPMEDVTDVVFRHVVKEAGAPDVFFTEFTNSDSYCHPEGKDSVR GRLVFTEDEQPMVAHIWGDKPEFFREMSIGVAEMGFQGLDINMGCPVPNVAERGKGSGLI LRPEVAAELIDAAKAGGLPVSVKTRIGFTEMAEMEAWITHLLEQDIANLSIHLRTRKEMS KVDAHWEVIPQIMAIRDRVAPQTTITINGDIPDRQKGLELAEQYGVDGIMIGRGIFKNPY AFEKEPKTHTPQELLGLLRLQLDLQDKYAELVPRSIVGLHRFFKIYVKGFPGASDLRAQL MNTKSTDEVRQLLATFEAEHGVLD >gi|307679031|gb|GL456766.1| GENE 50 52099 - 52869 849 256 aa, chain - ## HITS:1 COG:lin0673 KEGG:ns NR:ns ## COG: lin0673 COG0842 # Protein_GI_number: 16799748 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Listeria innocua # 1 256 1 256 256 373 84.0 1e-103 MFSLYFTALKSLAVKETNRYLRIWVQTLVPPVITTSLYFVIFGKMIGGRIGDMGGFSYME FIVPGLIMMSAITSSYANVSSSFFSQKFQKNIEEILVAPVPTHVIIWGFVIGGVGRSILV GALVTIISLFFVPLHVVSWLMVIMTLLMTAILFSLAGLLNGIFAQSYDDVSIVPTFVLQP LTYLGGVFYAISMLPPFWQAVSKVNPIVYMISGFRYGFLGVQDVPIGISMTILILFIVVL YGICWYLVETGRGLRS >gi|307679031|gb|GL456766.1| GENE 51 52862 - 53797 963 311 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 301 1 303 311 375 65 1e-103 MTDALVIQDLRKVYASGVEALRGIDLTVEEGDFYALLGPNGAGKSTTIGIVTSLVNKTSG KVKIFGYDLDTEMVRAKQQIGLVPQEFNFNPFETVQQIVVNQAGYYGVSRKEAMKRSEKY LKQSNLWEKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRREMWAFLQ ELNAQGTTIILTTHYLEEAEMLCRNIGIIQSGELIENTSMKHLLAKLQFETFIFDLAPYT QAPVIEGYQSVFEDELTLAVEVERNQGVNHLFEQLSQQGIKVLSMRNKSNRLEELFLKIT EDTYQREDQHV >gi|307679031|gb|GL456766.1| GENE 52 54055 - 54474 545 139 aa, chain + ## HITS:1 COG:SPy1057 KEGG:ns NR:ns ## COG: SPy1057 COG2893 # Protein_GI_number: 15675049 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Streptococcus pyogenes M1 GAS # 1 139 1 140 141 146 56.0 9e-36 MKRKFLIASHGNLAKGFQSSLDILADKGKELAVINAYVTPEDYTPIIQTFLQSLGAEEQA IILTDLYGGSVNQKIVQEVMTTKPDNVFIISNANLAIALSLIFLKEGEKLTKEDIQAAIA EAQIQFVELNPSNEEENFF >gi|307679031|gb|GL456766.1| GENE 53 54487 - 54978 723 163 aa, chain + ## HITS:1 COG:SPy1058 KEGG:ns NR:ns ## COG: SPy1058 COG3444 # Protein_GI_number: 15675050 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Streptococcus pyogenes M1 GAS # 1 163 1 163 163 222 77.0 2e-58 MITQVRVDDRLIHGQVAVVWTKELNAPLLVVANDEAAKNEVMQMTLKMAVPNGMKLLIRS VDDAIDVFNDPRGKDKRIFVIVNSVADATKIAKNVTDIESVNVANAGRFDKSDPATKTMV FPSVQLNPEELEAAKELASLTHVESYNQVLPTNSKLSLKQAVN >gi|307679031|gb|GL456766.1| GENE 54 54995 - 55810 1101 271 aa, chain + ## HITS:1 COG:SPy1059 KEGG:ns NR:ns ## COG: SPy1059 COG3715 # Protein_GI_number: 15675051 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Streptococcus pyogenes M1 GAS # 7 271 1 263 263 342 80.0 4e-94 MLMHATMAALAVFICFAGNYLTGQSMMERPLVVGLVTGILMGDMKTGVLMGASLEAIFLG NVNIGGVIAAEPVTATTLATTFAIISNVEQKAAMTLAVPIGMLAAFVVMFLKNVFMNIFA PSLDKAAREGNQKMVVTLHYGTWIIYYLIIASISFIGILAGSGPVNLFVESIPQNLMNGL SAAGGLLPAVGFAMLMKLLWDNKLAVFYILGFVLTAYLQLPAVAVAVIGTVICVVSAQRD VEFRDILKRKPAASSAVEGSAKEIEEEDFFA >gi|307679031|gb|GL456766.1| GENE 55 55807 - 56634 835 275 aa, chain + ## HITS:1 COG:SPy1060 KEGG:ns NR:ns ## COG: SPy1060 COG3716 # Protein_GI_number: 15675052 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Streptococcus pyogenes M1 GAS # 1 264 1 264 275 423 80.0 1e-118 MKLKENLSKEEKKMMRSVFWRSWTMNASRTGATQYHAVGVMYTLLPVINRFYKTKEERAE ALVRHTTWFNATMHINNFIMGLVASMEKQNSEDENFDASSITAVKASLMGPLSGIGDSFF WGILRVIAAGIGISLASTGSPLGAIVFLLLYNVPAFLIHYYALYSGYSIGESFIQKMYES GGMKILTKVSSMLGLMMMGSMTASNVKFKTILEVSVKGSKDVVKIQDYLDQLFVGIVPLA VTLLAFWLLRKKVNVNVVMFGIMFLGILLGLLGIC >gi|307679031|gb|GL456766.1| GENE 56 56782 - 59301 2323 839 aa, chain + ## HITS:1 COG:STM0571_1 KEGG:ns NR:ns ## COG: STM0571_1 COG1221 # Protein_GI_number: 16763948 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Salmonella typhimurium LT2 # 21 309 28 337 460 248 42.0 3e-65 MRLETYQHLVDILETSNTPMSTQEIATKIQLSRSVTSLYLNKLLEKGEVQQTGKKPVYWQ LTRATTPTTDVFRQYIGSQGSAKKAIEQCKAAMLYPPLGMPLLIHGASGVGKSFLAKLIY EYLKNEQIIGLEKFYTFNCADYANNPELLSSILFGHTKGAFTGAESEKQGLLAQANNSVL FLDEVHRLSNENQEKLFQFMDTGTFRPIGEEGKMVHSKVRLLFATTENPKKVLLPTFYRR ISVIVSLPNFKERPIRERIAILKNLFHREAKRMTKDINVDEEIFTALLENDEPGNVGSLS NKVQLLCASQLRKTLPNQPVVIGDATQPMITIPLDKEVLEEDTLSSDIFATFEALFTKEK TLAHLKTELTQFIKYCLDDEITLENDYFLQNLVTEVQTKNKLIINQPEQTEKPMKDVAKL LKILPPTFNETMLLPVQAQLKEHYPRTVSLVKNLVSPLPEEYRFLTEVLLSVLLSGEISE TIPYQALLVAHGESTATSIQAVANKLCGTYIFDAINMPLTSSVRDIVAEVKEWLSQRDTS QGVIMLVDMGSLTQLYKSLKPQILGELLVINNLTTAYALEIGHQLMNEQLFYGIAKTAEK KFKTDVQYFEGFSVEKNIIVSSISGLDIAKQIKQICQKYLYTDIKVITLKYKDLVNTLDI ANAEENYLKETSLILTTSYLDNHTNVASVNLLDMLDEDAGTQLMEPFQNLMHPNNIDSMI NEFVHFFSKEGLSEKLEFLNPDVIIKQVENVTKNIEKRFDLTLSGKMKFNLMMHNALMVE RTMLGVEDYEIPANLEELTINQKPFFQNAKNIFYTLEQFYRIEISNWELYVIYEILSSR >gi|307679031|gb|GL456766.1| GENE 57 59357 - 59629 316 90 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|327536334|gb|AEA95168.1| ## NR: gi|327536334|gb|AEA95168.1| choline binding protein [Enterococcus faecalis OG1RF] # 1 90 737 826 826 160 98.0 2e-38 NASYHELYRGNTFCGYVNSGAVKDIVSESKFKENPDMNQTDVLKTQDSMDEFIDFDNDGK ENKESLKEDITEKNLSSKEESNKEQTEISY Prediction of potential genes in microbial genomes Time: Tue Jul 5 18:28:47 2011 Seq name: gi|307679030|gb|GL456767.1| Enterococcus faecalis TX0312 genomic scaffold Scfld28, whole genome shotgun sequence Length of sequence - 95803 bp Number of predicted genes - 94, with homology - 89 Number of transcription units - 43, operones - 26 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 609 438 ## COG5484 Uncharacterized conserved protein 2 1 Op 2 . - CDS 668 - 1027 470 ## gi|229549644|ref|ZP_04438369.1| hypothetical protein HMPREF0345_1856 - Prom 1204 - 1263 6.6 + Prom 1850 - 1909 10.7 3 2 Tu 1 . + CDS 1937 - 2608 427 ## gi|315143445|gb|EFT87461.1| hypothetical protein HMPREF9495_02786 + Term 2807 - 2846 2.4 4 3 Tu 1 . - CDS 2601 - 2867 110 ## gi|256853536|ref|ZP_05558902.1| predicted protein - Prom 2924 - 2983 3.7 5 4 Tu 1 . - CDS 4043 - 4459 301 ## EF2024 ArpU family transcriptional regulator - Prom 4557 - 4616 5.3 6 5 Op 1 . - CDS 5367 - 5792 372 ## COG4570 Holliday junction resolvase 7 5 Op 2 . - CDS 5792 - 6649 662 ## EF2027 hypothetical protein 8 5 Op 3 . - CDS 6649 - 6849 262 ## EF2028 hypothetical protein 9 5 Op 4 . - CDS 6854 - 7495 329 ## MPTP_1437 hypothetical protein 10 5 Op 5 . - CDS 7500 - 8234 702 ## EF2031 hypothetical protein 11 5 Op 6 . - CDS 8227 - 8544 326 ## EF2032 hypothetical protein - Prom 8564 - 8623 2.4 + Prom 8520 - 8579 8.1 12 6 Tu 1 . + CDS 8773 - 9318 235 ## gi|229549630|ref|ZP_04438355.1| hypothetical protein HMPREF0345_1842 + Term 9381 - 9419 -0.7 13 7 Op 1 . - CDS 9299 - 9505 133 ## gi|229549629|ref|ZP_04438354.1| hypothetical protein HMPREF0345_1841 - Prom 9539 - 9598 2.4 14 7 Op 2 . - CDS 9603 - 9941 272 ## EF2034 hypothetical protein 15 7 Op 3 . - CDS 9978 - 10187 103 ## gi|229549627|ref|ZP_04438352.1| hypothetical protein HMPREF0345_1839 - Prom 10283 - 10342 7.0 16 8 Tu 1 . + CDS 10242 - 10430 100 ## EF2036 hypothetical protein 17 9 Op 1 . - CDS 10456 - 11178 767 ## COG3646 Uncharacterized phage-encoded protein 18 9 Op 2 . - CDS 11201 - 11512 135 ## EF2038 hypothetical protein 19 9 Op 3 . - CDS 11524 - 11715 200 ## EF2039 hypothetical protein - Prom 11774 - 11833 7.8 + Prom 11924 - 11983 9.2 20 10 Op 1 . + CDS 12006 - 12350 384 ## COG1396 Predicted transcriptional regulators 21 10 Op 2 . + CDS 12364 - 13002 304 ## EF2041 hypothetical protein + Prom 13041 - 13100 6.2 22 11 Op 1 . + CDS 13120 - 13884 496 ## EF2795 LysM domain-containing protein 23 11 Op 2 . + CDS 13899 - 14228 434 ## LCABL_12950 prophage Lp2 protein 7 + Term 14248 - 14287 3.1 24 12 Tu 1 . + CDS 14303 - 15451 656 ## COG0582 Integrase 25 13 Op 1 . - CDS 15479 - 15922 302 ## MPTP_1391 late competence protein ComGD, access of DNA to ComEA 26 13 Op 2 6/0.000 - CDS 15919 - 16194 469 ## COG4537 Competence protein ComGC 27 13 Op 3 24/0.000 - CDS 16194 - 17240 833 ## COG1459 Type II secretory pathway, component PulF 28 13 Op 4 . - CDS 17197 - 18165 626 ## COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB - Prom 18308 - 18367 7.4 - Term 18212 - 18250 6.2 29 14 Tu 1 . - CDS 18406 - 19734 1489 ## COG0531 Amino acid transporters - Prom 19839 - 19898 7.5 - Term 19966 - 20019 8.0 30 15 Tu 1 . - CDS 20024 - 21097 1111 ## COG0820 Predicted Fe-S-cluster redox enzyme - Prom 21128 - 21187 7.8 - Term 21177 - 21212 2.0 31 16 Op 1 36/0.000 - CDS 21223 - 23052 1715 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 32 16 Op 2 1/0.000 - CDS 23042 - 23791 1033 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component - Prom 23815 - 23874 8.2 - Term 23846 - 23899 12.1 33 17 Op 1 3/0.000 - CDS 23909 - 24610 923 ## COG2188 Transcriptional regulators - Prom 24657 - 24716 13.3 - Term 24687 - 24733 9.5 34 17 Op 2 . - CDS 24740 - 27163 2678 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins - Prom 27184 - 27243 4.8 - Term 27361 - 27414 9.2 35 18 Op 1 . - CDS 27477 - 28688 1656 ## COG1252 NADH dehydrogenase, FAD-containing subunit 36 18 Op 2 . - CDS 28717 - 29622 757 ## COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase - Prom 29728 - 29787 3.0 37 19 Tu 1 . + CDS 29744 - 30724 1144 ## COG0142 Geranylgeranyl pyrophosphate synthase + Term 30759 - 30816 9.6 - Term 30753 - 30798 6.5 38 20 Op 1 14/0.000 - CDS 30804 - 32567 231 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 39 20 Op 2 5/0.000 - CDS 32567 - 34300 173 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 40 20 Op 3 31/0.000 - CDS 34305 - 35318 1127 ## COG1294 Cytochrome bd-type quinol oxidase, subunit 2 41 20 Op 4 . - CDS 35315 - 36733 1552 ## COG1271 Cytochrome bd-type quinol oxidase, subunit 1 - Prom 36867 - 36926 6.9 - Term 37425 - 37458 4.7 42 21 Op 1 . - CDS 37465 - 38328 967 ## COG3708 Uncharacterized protein conserved in bacteria - Prom 38348 - 38407 3.3 43 21 Op 2 . - CDS 38413 - 40713 1998 ## COG0550 Topoisomerase IA 44 21 Op 3 . - CDS 40625 - 40990 346 ## COG4699 Uncharacterized protein conserved in bacteria - Prom 41014 - 41073 4.7 45 21 Op 4 . - CDS 41088 - 41657 818 ## COG1309 Transcriptional regulator - Prom 41691 - 41750 6.4 + Prom 41696 - 41755 8.3 46 22 Op 1 3/0.000 + CDS 41790 - 42305 515 ## COG1881 Phospholipid-binding protein 47 22 Op 2 . + CDS 42322 - 43560 1193 ## COG0477 Permeases of the major facilitator superfamily - Term 43636 - 43694 13.1 48 23 Tu 1 . - CDS 43740 - 44864 1382 ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain - Prom 44930 - 44989 5.9 - Term 45027 - 45083 11.3 49 24 Op 1 . - CDS 45090 - 45434 436 ## EF2071 hypothetical protein 50 24 Op 2 2/0.000 - CDS 45502 - 46647 1165 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes - Prom 46673 - 46732 3.9 - Term 46736 - 46787 9.4 51 24 Op 3 . - CDS 46804 - 47778 1230 ## COG0462 Phosphoribosylpyrophosphate synthetase - Prom 47952 - 48011 7.0 + Prom 47905 - 47964 7.6 52 25 Op 1 42/0.000 + CDS 47991 - 48740 191 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 53 25 Op 2 12/0.000 + CDS 48737 - 49606 1000 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 54 25 Op 3 . + CDS 49593 - 50519 1378 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin + Term 50528 - 50585 17.0 - Term 50515 - 50572 17.0 55 26 Op 1 . - CDS 50574 - 52112 1744 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 56 26 Op 2 . - CDS 52260 - 52367 74 ## - Prom 52387 - 52446 3.3 - Term 52430 - 52472 4.0 57 27 Op 1 . - CDS 52482 - 53675 1776 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase 58 27 Op 2 22/0.000 - CDS 53690 - 54523 1135 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen 59 27 Op 3 32/0.000 - CDS 54543 - 55223 996 ## COG2011 ABC-type metal ion transport system, permease component 60 27 Op 4 . - CDS 55242 - 56312 1200 ## COG1135 ABC-type metal ion transport system, ATPase component - Prom 56342 - 56401 3.2 + Prom 56281 - 56340 6.6 61 28 Tu 1 . + CDS 56417 - 56554 72 ## + TRNA 57635 - 57707 79.5 # Thr GGT 0 0 + Prom 57636 - 57695 78.1 62 29 Op 1 . + CDS 57865 - 59355 864 ## EF2146 hypothetical protein + Prom 59479 - 59538 6.2 63 29 Op 2 . + CDS 59569 - 59748 175 ## EF2147 hypothetical protein + Term 59803 - 59843 8.1 - Term 59791 - 59831 8.1 64 30 Op 1 . - CDS 59836 - 60801 1112 ## EF2148 hypothetical protein - Prom 60854 - 60913 1.9 - Term 60892 - 60920 -0.9 65 30 Op 2 . - CDS 60977 - 61267 471 ## EF2149 hypothetical protein 66 30 Op 3 . - CDS 61315 - 62553 1398 ## COG2348 Uncharacterized protein involved in methicillin resistance - Prom 62668 - 62727 7.7 - Term 62762 - 62815 15.1 67 31 Tu 1 . - CDS 62864 - 64672 2257 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains - Prom 64732 - 64791 5.4 - Term 65011 - 65062 6.1 68 32 Op 1 34/0.000 - CDS 65115 - 65948 910 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 69 32 Op 2 3/0.000 - CDS 65945 - 67651 278 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P - Prom 67684 - 67743 1.9 70 32 Op 3 . - CDS 67752 - 68303 448 ## COG4720 Predicted membrane protein - Prom 68347 - 68406 7.8 - Term 68467 - 68522 17.6 71 33 Op 1 6/0.000 - CDS 68533 - 69888 1934 ## COG1109 Phosphomannomutase 72 33 Op 2 7/0.000 - CDS 69881 - 71044 1380 ## COG4856 Uncharacterized protein conserved in bacteria 73 33 Op 3 1/0.000 - CDS 71041 - 71925 968 ## COG1624 Uncharacterized conserved protein - Prom 71954 - 72013 6.4 - Term 72067 - 72105 6.0 74 34 Op 1 . - CDS 72122 - 75811 4028 ## COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit 75 34 Op 2 . - CDS 75832 - 75912 87 ## - Prom 75966 - 76025 10.0 + Prom 75914 - 75973 6.0 76 35 Tu 1 . + CDS 76017 - 77516 503 ## lin2693 hypothetical protein + Term 77522 - 77548 -1.0 - Term 77509 - 77535 -1.0 77 36 Op 1 5/0.000 - CDS 77542 - 78882 1461 ## COG0174 Glutamine synthetase 78 36 Op 2 . - CDS 78925 - 79308 449 ## COG0789 Predicted transcriptional regulators - Prom 79330 - 79389 7.4 - Term 79448 - 79496 8.7 79 37 Op 1 2/0.000 - CDS 79510 - 80751 582 ## PROTEIN SUPPORTED gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 80 37 Op 2 . - CDS 80755 - 81684 864 ## COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase 81 37 Op 3 1/0.000 - CDS 81685 - 82431 699 ## COG0584 Glycerophosphoryl diester phosphodiesterase - Prom 82474 - 82533 2.8 - Term 82491 - 82544 -0.9 82 37 Op 4 . - CDS 82551 - 83294 615 ## COG0463 Glycosyltransferases involved in cell wall biogenesis - Term 83314 - 83360 2.1 83 37 Op 5 . - CDS 83375 - 83530 102 ## gi|255975366|ref|ZP_05425952.1| conserved hypothetical protein - Prom 83564 - 83623 5.0 - Term 83616 - 83656 5.4 84 38 Tu 1 . - CDS 83663 - 84613 1025 ## COG0451 Nucleoside-diphosphate-sugar epimerases - Prom 84637 - 84696 7.5 85 39 Tu 1 . - CDS 85739 - 85852 80 ## - Term 86192 - 86249 12.4 86 40 Op 1 . - CDS 86255 - 87661 829 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid - Term 87676 - 87714 -0.4 87 40 Op 2 . - CDS 87727 - 89112 665 ## MPTP_0822 hypothetical protein 88 40 Op 3 1/0.000 - CDS 89127 - 90050 529 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC - Prom 90207 - 90266 10.7 - Term 90201 - 90246 -0.0 89 41 Op 1 1/0.000 - CDS 90384 - 90785 480 ## COG0615 Cytidylyltransferase 90 41 Op 2 5/0.000 - CDS 90814 - 92019 840 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC 91 41 Op 3 11/0.000 - CDS 92045 - 93025 757 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 92 41 Op 4 . - CDS 93036 - 94013 592 ## COG0463 Glycosyltransferases involved in cell wall biogenesis - Term 94488 - 94528 -0.7 93 42 Tu 1 . - CDS 94663 - 94755 68 ## - Prom 94845 - 94904 5.8 - Term 95352 - 95386 6.2 94 43 Tu 1 . - CDS 95454 - 95801 335 ## EF2174 hypothetical protein Predicted protein(s) >gi|307679030|gb|GL456767.1| GENE 1 3 - 609 438 202 aa, chain - ## HITS:1 COG:lin1733 KEGG:ns NR:ns ## COG: lin1733 COG5484 # Protein_GI_number: 16800801 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 202 1 217 294 136 43.0 2e-32 MARKRDPRRDEAKKIWLDSNGKKVLKDLAKELNVSDSQIRKWKSIDKWSAELKGNVTNAK GNVTNRGGAPFGNKNAVGNKGNSRASPPLGNKNAIKTGEYETIFADMLSDEEKDIYSNLN DDPFFILDEEIRILKIRQYRMLKRIKDAEAGLNDEEVERLQQLRKVKEPSVIDGKMVTVK REVLKDVQVTRKTFRKLDDILA >gi|307679030|gb|GL456767.1| GENE 2 668 - 1027 470 119 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229549644|ref|ZP_04438369.1| ## NR: gi|229549644|ref|ZP_04438369.1| hypothetical protein HMPREF0345_1856 [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] hypothetical protein HMPREF0345_1856 [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] hypothetical protein HMPREF9508_00691 [Enterococcus faecalis TX0312] # 1 119 1 119 119 192 100.0 8e-48 MNRIVIPFDKEDISVDELKEHIDYYVELANKGEELIWSGDKKEARDILRKINKHLSKEYH YYEKTNVSEIIDEKELYCCYYWAVVEAYAKQNNKNSYDYLDSNFYDIKNYLKYHMAGKI >gi|307679030|gb|GL456767.1| GENE 3 1937 - 2608 427 223 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315143445|gb|EFT87461.1| ## NR: gi|315143445|gb|EFT87461.1| hypothetical protein HMPREF9495_02786 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9503_00319 [Enterococcus faecalis TX0043] hypothetical protein HMPREF9508_00692 [Enterococcus faecalis TX0312] # 1 223 1 223 223 384 100.0 1e-105 MQSLTLKRVQKFDISQPISLSDDNNVLGTIAPDSPKTLTVESRIFKVFNATFMETINESI FVLNDDAELQAINEYKRSEVFKVFYDTTDKVLYSTAPSAISRNFFKTLEETEPSKVKLSN FIFDFKTIQTKLNSTRGIAFTTEEEGVQKKRFTGDNVEANQEAGEALTDDTATFLIGKMD ILQKERTIGFTKAGALLMYSSLNDIDNENPFLNAARAIIKIIS >gi|307679030|gb|GL456767.1| GENE 4 2601 - 2867 110 88 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256853536|ref|ZP_05558902.1| ## NR: gi|256853536|ref|ZP_05558902.1| predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis T8] hypothetical protein HMPREF9495_02787 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9503_00318 [Enterococcus faecalis TX0043] hypothetical protein HMPREF9508_00693 [Enterococcus faecalis TX0312] # 1 88 182 269 269 144 98.0 2e-33 MISEESNYDKKPYEEKSYYTVSLNMEKNPFYLLTIKTYDKPKDIKFDLSFKIDGVNFKTT NKKIVLTTKDITKVDTVLKDYVMLGKVS >gi|307679030|gb|GL456767.1| GENE 5 4043 - 4459 301 138 aa, chain - ## HITS:1 COG:no KEGG:EF2024 NR:ns ## KEGG: EF2024 # Name: not_defined # Def: ArpU family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 138 1 138 138 233 95.0 2e-60 MILLLKEVDFRQTKANARNVLKSFRRLERIAGRSLIDLKSPIITEMPKSQRHGNKTEDAL VQLADAEAERDAILSALMALSLTSRQILHYSFCVQDHYSNYKIAREVGYSERSIQRMKSE ALIEFAEAYRNGKIIAYR >gi|307679030|gb|GL456767.1| GENE 6 5367 - 5792 372 141 aa, chain - ## HITS:1 COG:lin1248 KEGG:ns NR:ns ## COG: lin1248 COG4570 # Protein_GI_number: 16800317 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvase # Organism: Listeria innocua # 1 141 2 140 145 90 36.0 7e-19 MRIILPIEPKPQSRPRFARRGNYVQTYEDSAMRAYKQKVKAYLRKTKPELIEKGAIFTHI TFYIAAPKSLLSSKKKRLEVKLERKYCDKKPDLDNYFKAVTDAAEGILYKNDGQIAVMVC QKLYSMRPRTELEITSLEEQV >gi|307679030|gb|GL456767.1| GENE 7 5792 - 6649 662 285 aa, chain - ## HITS:1 COG:no KEGG:EF2027 NR:ns ## KEGG: EF2027 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 285 1 285 285 457 99.0 1e-127 MNEHRGYYAIIPAIVRYDNHLNGNAKLLYGELTALANEKGYCWATNQYFANLYNVSKRTI ISWLKQLEERNYIKMQIFYKPNSKMVDRRHIYILPYPTDTEFYTPSEENFITYGKNHQEG DEENFTTPSEENFTENNTLINNTKNNTKNIYSVEQSSTMSELFEKVWKTYPKKTNKKKAK EQFLKKIKSDEDFERFKTGYKAYLKYIKLNDWYHPQELFRWIRDERFNDEYDLSETATQV RYSNNPVRQEKLPDWVNEPKKEEEKLSPEKQAELDRQIKEYLEGK >gi|307679030|gb|GL456767.1| GENE 8 6649 - 6849 262 66 aa, chain - ## HITS:1 COG:no KEGG:EF2028 NR:ns ## KEGG: EF2028 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 66 1 66 66 110 100.0 2e-23 MVEELLEKYRQLTSSQKLFFELLAFVYIGSRNGKGIAIEAQTIKKVVNGEIKHKYVYTVV VDEEDN >gi|307679030|gb|GL456767.1| GENE 9 6854 - 7495 329 213 aa, chain - ## HITS:1 COG:no KEGG:MPTP_1437 NR:ns ## KEGG: MPTP_1437 # Name: not_defined # Def: hypothetical protein # Organism: M.plutonius # Pathway: not_defined # 9 213 17 228 228 121 32.0 2e-26 MIGKIIKHKGNKLAIEFEDEINSNFLKLLANNDDNLVKVELLDNRQMSQKQNALSHVLIA DIARWSYDEPKWIEEVLKYYYEAKSGVYFEHSKATRHEATEWISFLIEFILKNDVPLEKR YQYLLENNKWFYYCLKYRKCCICGKHADVCHIEVVGMGRNRQKINHETFTFYAGCRQHHQ EEHQIGTKNFLNKYQIKPVKLNVEERKKLNIGG >gi|307679030|gb|GL456767.1| GENE 10 7500 - 8234 702 244 aa, chain - ## HITS:1 COG:no KEGG:EF2031 NR:ns ## KEGG: EF2031 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 244 1 244 244 438 98.0 1e-122 MAEATKTDFSKLNVYQKLAYVRQKAPYIQKSKRGQQYSYVGSSDVLSALNTVINQVGLIL KPEIVAHQVRESQDEVWKADKVKKEPVAKKRTTYFTELELMMTWINIHNPSEIVACSWYS QGVDIEGEKGVGKALTYAEKYFLLKFFNIATDDDDPDKYQKEQLKNTAITERQIDMLNAS ISRVAELAGQEFEAVKSLAINDSDLNPKKVFEEYSAYDYGVISKLLAKWINFYESRQKVQ EDKK >gi|307679030|gb|GL456767.1| GENE 11 8227 - 8544 326 105 aa, chain - ## HITS:1 COG:no KEGG:EF2032 NR:ns ## KEGG: EF2032 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 104 1 104 105 181 95.0 8e-45 MNRREANVLDRYLTEPTEKLYKETYEDDPVDTTDCFGNEIADEDGVFELTFAMKCLYTGQ PVLTCKKIATQDTIVDLIEELGEENVYLIEYVSSGKRYKEGLLNG >gi|307679030|gb|GL456767.1| GENE 12 8773 - 9318 235 181 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229549630|ref|ZP_04438355.1| ## NR: gi|229549630|ref|ZP_04438355.1| hypothetical protein HMPREF0345_1842 [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis D6] predicted protein [Enterococcus faecalis X98] hypothetical protein HMPREF9504_00344 [Enterococcus faecalis TX0102] hypothetical protein HMPREF0345_1842 [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis D6] predicted protein [Enterococcus faecalis X98] hypothetical protein HMPREF9504_00344 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9494_02278 [Enterococcus faecalis TX2137] hypothetical protein HMPREF9500_03129 [Enterococcus faecalis TX0017] hypothetical protein HMPREF9501_02731 [Enterococcus faecalis TX0027] hypothetical protein HMPREF9508_00703 [Enterococcus faecalis TX0312] # 1 181 4 184 184 321 99.0 2e-86 MKKYFDVFVKCVTTIGALFAIWNVMQNNNQIKKVNYENEQNIKLEQSKNISVWNNEQSNK NSPISLEKIPNVIANNSNQAPVYKVFVISIPNKIDNDSLSKKVSFASEFNSYKYLETLPP GKVELSLPVLPNAMGGIHGVPIIFFTDFRNVEWYRDQQGRLMEYPKYETFLNKNGINPPY R >gi|307679030|gb|GL456767.1| GENE 13 9299 - 9505 133 68 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229549629|ref|ZP_04438354.1| ## NR: gi|229549629|ref|ZP_04438354.1| hypothetical protein HMPREF0345_1841 [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] hypothetical protein HMPREF0345_1841 [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] conserved domain protein [Enterococcus faecalis TX0312] # 1 68 1 68 68 80 100.0 4e-14 MKKFIGTFLISMLLIMAFFIGDSLVSWINIIKKSPTNFLYDSVGLLISVASIVLIVLAVL TIFNDMVD >gi|307679030|gb|GL456767.1| GENE 14 9603 - 9941 272 112 aa, chain - ## HITS:1 COG:no KEGG:EF2034 NR:ns ## KEGG: EF2034 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 112 1 112 112 177 97.0 1e-43 MNDKIQKLIKKLAKECQKEDVALSLAAIDLEGEMAISQVGKGTIVAIAAHSQYTLTKEKL EQSDCDCPKHRLLKEMYGIATETTTKNTHTFVTDDPNDLMDILSKIFRGELK >gi|307679030|gb|GL456767.1| GENE 15 9978 - 10187 103 69 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229549627|ref|ZP_04438352.1| ## NR: gi|229549627|ref|ZP_04438352.1| hypothetical protein HMPREF0345_1839 [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] hypothetical protein HMPREF9504_00342 [Enterococcus faecalis TX0102] hypothetical protein HMPREF0345_1839 [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] hypothetical protein HMPREF9504_00342 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9508_00706 [Enterococcus faecalis TX0312] # 1 69 1 69 69 134 100.0 2e-30 MKVIRETRLIGAFLLMIALGVLLKSHFSVPVLATISVPLFIRWFFNWDEAEYQHFQKRQN KKPQSSAND >gi|307679030|gb|GL456767.1| GENE 16 10242 - 10430 100 62 aa, chain + ## HITS:1 COG:no KEGG:EF2036 NR:ns ## KEGG: EF2036 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 62 1 62 62 89 100.0 4e-17 MFFVIKKASNKKYYFVIKTEENEVIASSKTYYYKSSVLEIIESIKSDMDQKAIIVDTTFN WG >gi|307679030|gb|GL456767.1| GENE 17 10456 - 11178 767 240 aa, chain - ## HITS:1 COG:PM1774 KEGG:ns NR:ns ## COG: PM1774 COG3646 # Protein_GI_number: 15603639 # Func_class: S Function unknown # Function: Uncharacterized phage-encoded protein # Organism: Pasteurella multocida # 5 116 29 138 239 75 38.0 6e-14 MDNLVIMKNQQAVTTSLQVAETFNKNHRDVLAAIDDLKEGVAENYAGLFYEDSYIHPQNK QKYRQIIMNRDGFTLLAMGFTGQKALKFKLKYIEAFNQMEELLKTQSNLPINNTELLLEA ALKHERGLTLVNQRLDKLETETTINRSQQRKIQGLVSSTVIKVLGGKKALAYQDSSIKQS AFSNCYKQLKALFDVASYVDIPKVRYEEAVALIPRWKPNLELQARIDMANGNGDMFKEIG >gi|307679030|gb|GL456767.1| GENE 18 11201 - 11512 135 103 aa, chain - ## HITS:1 COG:no KEGG:EF2038 NR:ns ## KEGG: EF2038 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 103 1 103 103 183 99.0 2e-45 MENFLDTSSKNFLYNIIEKILRKMFEQVINEASQGLNERAEYLDIKQLSSRYSMSVPEVE QNFVKDKRMQMIEKRKPGTSKGKRYWPAKEAIKICNDIMNHWD >gi|307679030|gb|GL456767.1| GENE 19 11524 - 11715 200 63 aa, chain - ## HITS:1 COG:no KEGG:EF2039 NR:ns ## KEGG: EF2039 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 63 1 63 63 80 68.0 2e-14 MPDTSVSRQKIRDYFESKGISLVSVATYFDIPRQDLIDYLNGKKKRKKAHETLLAIIDFY KIR >gi|307679030|gb|GL456767.1| GENE 20 12006 - 12350 384 114 aa, chain + ## HITS:1 COG:lin2607 KEGG:ns NR:ns ## COG: lin2607 COG1396 # Protein_GI_number: 16801669 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 1 112 1 107 107 73 42.0 6e-14 MTTFERIKNLAKQKDKSLQQVARELKYGENYFYSLNAGKQPTAEKLQEIANYFNVSVDYL LGRTDNPNSDNLEEDEIATFFRVNTEDLTESEKDQLREELKEYLEFMKSRLKNK >gi|307679030|gb|GL456767.1| GENE 21 12364 - 13002 304 212 aa, chain + ## HITS:1 COG:no KEGG:EF2041 NR:ns ## KEGG: EF2041 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 212 4 215 216 392 95.0 1e-108 MYLDYDTYFEYHDQTYIIIEKVANYYGIELKELRWKHYKDYMIDVENVDIIPYSFGDVSR KIFSGNIIRFHDKCGISYNSTMVKGRQNFSILHESAHYFFDMNKECKSQSFSDLITGKGY TSEDEPKEIRANIFASLALINNEALKECLRKRMSFRQICEEFEMSAAALYVRLYDFLTKI FLLNPCLARSAINQYRYNCDSTKLISYVKMVL >gi|307679030|gb|GL456767.1| GENE 22 13120 - 13884 496 254 aa, chain + ## HITS:1 COG:no KEGG:EF2795 NR:ns ## KEGG: EF2795 # Name: not_defined # Def: LysM domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 183 254 286 354 354 87 68.0 7e-16 MKKIVTLSLSLLLLTACSNETKQVSKQNSSSTTITSEKKDISDSKKINSSSSESSTIHYS STQTDETTQMELGGSTYSQILETYTQKLTTTTPILIEELRNEGEPIKGNVSALAEVLNSK IGKLADISNAGISEMASIQLSNKDDYSLYESWANKLTDVYTAEANKLTDLYTELAAVNTE ISTSQQPLPSTQSSSAIEQPQSSEAEQPVYDKVRSGEGARQVAERNGLTLEQLLALNPGI DSSVFYPGQPLRIK >gi|307679030|gb|GL456767.1| GENE 23 13899 - 14228 434 109 aa, chain + ## HITS:1 COG:no KEGG:LCABL_12950 NR:ns ## KEGG: LCABL_12950 # Name: not_defined # Def: prophage Lp2 protein 7 # Organism: L.casei_BL23 # Pathway: not_defined # 2 106 3 110 116 102 48.0 7e-21 MKKIKYFIYTLLLLIVFTACGTKEVKPDYTSKEAETALNNGEDLTGKTVQFTVDKYVPDG SLGYTIQTGDHLNFVSSKNPDVKTGDKVIAKIKKVENLMGSWIITFDKK >gi|307679030|gb|GL456767.1| GENE 24 14303 - 15451 656 382 aa, chain + ## HITS:1 COG:BS_ydcL KEGG:ns NR:ns ## COG: BS_ydcL COG0582 # Protein_GI_number: 16077547 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Bacillus subtilis # 63 379 49 368 368 113 25.0 8e-25 MAKLNWSKKYKYVFSYSNKKGTFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQY DLETQNTSFIENKQLTIDEWIKVWIPYAQDNWSVSTKQNIESAIKFHISPLIGNQKLSSL NKITYKREFIDKLRQENKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKFDLSNNV RSFSKKELQRFIAVLENEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLNEKYFDINSTR GDYGENKPKTKTSIRKVYFDNSLLTLIKKYKNHEKERLFREGIILSDKDYFILSSRNLPI KQSRITYMFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVY SDVLKEEEKETADMMDKLIENL >gi|307679030|gb|GL456767.1| GENE 25 15479 - 15922 302 147 aa, chain - ## HITS:1 COG:no KEGG:MPTP_1391 NR:ns ## KEGG: MPTP_1391 # Name: not_defined # Def: late competence protein ComGD, access of DNA to ComEA # Organism: M.plutonius # Pathway: not_defined # 6 134 10 134 134 78 39.0 8e-14 MNKSAGFTLMETLVSLTIVCFMTMLPTLAIHRWQETLKIEQFLATVEKQLRFAQQQAIVL EETQEVWFFEEQQSFSFPDKLNQSARRTLLAVPEKMTVSGPSKLSFLHSSGNNGRLVKYI FTWTEKKQQLILQFQMGSGRAFIYQWF >gi|307679030|gb|GL456767.1| GENE 26 15919 - 16194 469 91 aa, chain - ## HITS:1 COG:SP2051 KEGG:ns NR:ns ## COG: SP2051 COG4537 # Protein_GI_number: 15901871 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Competence protein ComGC # Organism: Streptococcus pneumoniae TIGR4 # 3 86 9 92 108 84 63.0 7e-17 MKKKQKYAGFTLLEMLIVLLIISVLILLFVPNLAKHKETVDKKGNEAIVKIVESQIELYT LEKNKTPSLNELVNEGYITKEQLDKYTAEKQ >gi|307679030|gb|GL456767.1| GENE 27 16194 - 17240 833 348 aa, chain - ## HITS:1 COG:L0314 KEGG:ns NR:ns ## COG: L0314 COG1459 # Protein_GI_number: 15674104 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulF # Organism: Lactococcus lactis # 9 344 24 353 357 190 35.0 4e-48 MGLLQKKRIFKPSNKLTKKQQQLFLKLLADLLANGFNIQESFSFMKKSNALPQHSITFLV EGFSSGIALQALVEELGFSTMVSAQLSFATAHGDLVGTLQAISEHFFQTEKYRQQFYKII SYPLLLIVFLILVIVGIRQFLLPQLMENDANSYSKNIGILLIVYSPYILVTLVFVLSFSF FILNRYLKHQSAIQRAFVYLKLPIIRGLYREYVSAFFALEWGKLLAQGLEMKEVIDLMRH TTNYPLMKELAGAISEGLLVGETLHRQLAAYPFFTKALGLMIQQGEVKGKLGKELMVYSN VCFQGFFKKIERVITLVQPLIFIIIACLIIGVYGAMLLPIYGNMEGVL >gi|307679030|gb|GL456767.1| GENE 28 17197 - 18165 626 322 aa, chain - ## HITS:1 COG:SP2053 KEGG:ns NR:ns ## COG: SP2053 COG2804 # Protein_GI_number: 15901873 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB # Organism: Streptococcus pneumoniae TIGR4 # 5 271 2 266 313 249 50.0 4e-66 MTENVKKLAHQLIEWGVLHGAQDVYFLPNDTEIAISFRTGMQRTLYTQVSAEIGEKLIFH FKFIGGMDVGERRKAQLGATTYLIGETKQRLRLSSVGDFQNRESLVIRFLHRFGEQAEHF FFPHQLNEIEASCQKRGLYLFSGPVGSGKTTTMYRVAKQRSGEQQVIAIEDPVEIEEKQF LQLQTNEKIQLTYEALIKVCLRHHPDILIIGEIRDGETAQAVIRAALTGHTIFATIHARN LLGVQRRLIELGGPEHELAECLQGIIYQQILTTTINKEQVAGILYDYFFFKEAVIKSSWQ KNLRKAWAYGFITEKTYFQAIE >gi|307679030|gb|GL456767.1| GENE 29 18406 - 19734 1489 442 aa, chain - ## HITS:1 COG:SA1270 KEGG:ns NR:ns ## COG: SA1270 COG0531 # Protein_GI_number: 15927018 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 4 437 5 437 440 423 60.0 1e-118 MEKKQLKREITTFGALSTVMGTVIGAGVFFKAASVVGHAQSASLAIFAWVLGGALTICAG LTSAELATAIPETGGAVKYIEYTYGKLAGFLLGWAQSIIYYPANISALSIIFSTQLINLF HLSANLLIPIAILAGTSITIINLLGTKIASLVQSTTLVVKLIPIALISLVGLFTPGQVAV SLFPVETTANTGFLVAFSGALVATMFAYDGWLGVGNVAGEMKRPERDLPKAIIFGLLLIT LIYALINFVFLKTLPIEQIAGNLNAASDASVAIFGPIGGKIVTIGILISVYGALNGYTMT GIRIPYALALDNLMPFSRQFQKLSKRFVVPYVAGIFQLAVAIIMMFFGTFDLLTDMLVFV MWLFNLLIFLAVFILRKREPELKRPYKVPGYPIIPIIASLGGIFILVTTSITQPILALIG IGITLLGIPVYLVNKQKMKPKT >gi|307679030|gb|GL456767.1| GENE 30 20024 - 21097 1111 357 aa, chain - ## HITS:1 COG:L184159 KEGG:ns NR:ns ## COG: L184159 COG0820 # Protein_GI_number: 15672161 # Func_class: R General function prediction only # Function: Predicted Fe-S-cluster redox enzyme # Organism: Lactococcus lactis # 3 355 10 363 365 556 75.0 1e-158 MQKESIYGLTREQLVDWFLAHGEKKFRATQVWEWLYTKRVASFSEMSNISKSLMTLLEEN FSLNPLKQVIVQEAQDGTVKYLFELPDKNMIETVLMRQEYGLSVCVTTQVGCNIGCTFCA SGLLKKQRDLTAGEIVAQIMWVQHYFDERGLDERVSHVVVMGIGEPFDNYANVMNFLRTI NDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAISLHAPNNEVRTSIMRINRSFPI EKLMAAIDEYIEKTNRRVTFEYIMLSQVNDRPEHAQQLADLLRNKKKLSYVNLIPYNPVS EHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDIDAACGQLRSKQMKKEKVKNQ >gi|307679030|gb|GL456767.1| GENE 31 21223 - 23052 1715 609 aa, chain - ## HITS:1 COG:BS_yxdM KEGG:ns NR:ns ## COG: BS_yxdM COG0577 # Protein_GI_number: 16081014 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Bacillus subtilis # 1 603 1 620 622 260 32.0 7e-69 MNFNQFVIRNTIRNKHLYLAYFLSTMFSVMIFFTFTGFVFHPALANGLNPKAQMGMTAAA IIIYGFSFLFVLYSMDVFIQSRKKEFGTLMIQGMSPKQLKKMIFIENLVIGFFATIFGSI LGVGFSQFILWISNLLMHLGLGFYLPVMPFIITVISFAVLFLVISFFIQFRLPKATLQEL LKAGEMGKGEIKSSKVKSFLAVLLLVVGYGIALVAKGQLVLMVMFPVIFLVILGTKFLFD QLSVSVIERLKRKPKIFWKKTNMVVLSDLAFRMKDNARSFFLVSVISTVAFAAIGTLYGV NEMIFKGISSVPYELTLSDSTNPENQEMKQFATKTFQEKNIQFDQIDYTMYKTSAGIQLI KTSEYNKLAKFIDEPTLTGEKVVNLSQKDAPSAASVDVKSVQLANDQVLNIDKTEETNIL PTFGGVVVIPDSTSTDGIKEETETIWQPKEGTDKETLIDAENIIGEKYPMLLGTAATVAG ITQFYTPVLFVGLFIGIVFFVSAGSFLYFRLYSDMNTDVEKFKMIYKLGLTKRELKKMIY QQVGILFFTPIVVSFIHGAVALKAMYAVLDQPMQLAGWQVLGVFLLIQVVYYLIARTFYF KKVYHLVKD >gi|307679030|gb|GL456767.1| GENE 32 23042 - 23791 1033 249 aa, chain - ## HITS:1 COG:BS_yxdL KEGG:ns NR:ns ## COG: BS_yxdL COG1136 # Protein_GI_number: 16081015 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Bacillus subtilis # 1 249 4 252 257 278 54.0 5e-75 MLEVQNLKKVYGNEIKYEALKGINLTVQDGEFIGIMGPSGSGKSTLLNLLATIDSPTDGE ILLNGKNPNNLNQEQIAKFRRTELGFVFQSFNLMPTLTVEENIILPLTLDGEKVSVMKRQ LAELSERLGINHLLKKRIAEISGGQAQRVAVARAMIHHPQLLLADEPTGNLDTKSSKDVM GLLQQLNEEEAATILMVTHDPLAASYCKRIVFIKDGELIDEIVQNGNQKEFYDLIMVKLA EIEGVDNEF >gi|307679030|gb|GL456767.1| GENE 33 23909 - 24610 923 233 aa, chain - ## HITS:1 COG:ECs4225 KEGG:ns NR:ns ## COG: ECs4225 COG2188 # Protein_GI_number: 15833479 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 6 187 33 206 265 77 28.0 2e-14 MRRKSVLYLEVADQIKEDILSGKYPVGTFLPTETELEEMFNVSKITIRRAIEMLATEEFV EKKSGRGTTVLSNRPYNKLSKAGTFTEFLNESGQKVTKKVLQVENLTLSKEMPAYQFLGE EVVHLSRLYLIDEQPYIYFNYYLPAAMKDVSLTEYKEESLYRLMDRHAIEIYKFEDRFEV ATLTEAEQKMLQTTETTGLKRIRRSLSPTGRCVEYSEAIYNTKIHPYVIEYEA >gi|307679030|gb|GL456767.1| GENE 34 24740 - 27163 2678 807 aa, chain - ## HITS:1 COG:SPy0458 KEGG:ns NR:ns ## COG: SPy0458 COG1674 # Protein_GI_number: 15674577 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Streptococcus pyogenes M1 GAS # 4 792 3 798 801 681 50.0 0 MAQKRATNKKKSTTKKKTKKQQQQQERLNYMFLGLIFILFGVFGLFRLGFLGTLLANCLR LVVGNTFPFAAILLILYGLLVMIYGKDFPLKRGRPIFGAVLIYISVLLFFHAFMFRNVSG SQPDILGNTWEFLQSDLKANQVTQNVGGGMIGALLYQGTYFLVAQFGSYLIATLLLLAGI FLMSMWDFQQIVDHFQSIQDRLSHVSAKSQARQEEKEAKRAAKKEAKAAERQAKIEAAAQ QKLQERERMEQAAAERLTKTPVETHQPMVEEPAAPTPVQIDSFQQQNQAMPVPPIAATKP QREQEEEAADEAGVLEFEISEEAEDRDYQLPPTDLLDTIQATDQSGEYEKIEKNIGVLEQ TFKSFGVDAKVVKASLGPSVTKFEVQPAVGVKVSKIVNLTDDIALALAAKDVRMEAPIPG KSLIGIEVPNSAISTVSFRDIVEAQPSHPDKLLEVPLGRDISGMVQTADLSKMPHLLIAG STGSGKSVAINGIITGILMQAKPHEVKLMMIDPKMVELNVYNGIPHLLTPVVTNPRKAAQ ALQKVVQEMEFRYEKFAATGVRNITGYNQLIQQKNAEDGENRPILPFIVVIVDELADLMM VASNEVEDAIIRLAQMARAAGIHMILATQRPSVDVITGIIKANVPSRMAFAVSSGTDSRT IIDTNGAEKLLGRGDMLFLPMGENKPIRIQGAFISDQEVERVVAFVTDQQEAEYQESMMP TDEPTTSGGGEAPQDELFEEAKNLVVEMQTASISLLQRRFRIGYNRAARLVDELEAHGVI GPSEGSKPRKVFLQAESEEAATETPEQ >gi|307679030|gb|GL456767.1| GENE 35 27477 - 28688 1656 403 aa, chain - ## HITS:1 COG:lin2488 KEGG:ns NR:ns ## COG: lin2488 COG1252 # Protein_GI_number: 16801550 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase, FAD-containing subunit # Organism: Listeria innocua # 1 402 1 402 403 345 44.0 6e-95 MNKKHVVILGAGYAGLKTLRELQKGAKDVEITLVDRNNYHYEATDLHEVAAGTQPAEKIT YNIMDVVDEKMTTFIQGTVKTIDAATQTVALEDGQTINYDYLVVSLGFESESFGIPGVQE HALQMVDVKTALNVYEHIQEQMRQYKATQNEEFLKIVVCGAGFTGIELLGSLVENKPKFA EIAGVSADQIQIYCVEAVTRLLPMFNEKLANYGVQLLKDSAIHLLLGKPIKEIKPGAVVY QDNEAGDLAELSAKTIIWTTGVSGSHVVGDSGFEARRGRVMVQPDLTDANHSNVYIIGDC SAVMDTETNRPYPTTAQIALKMGAHAAKNIQAQLKGEATKPFSFKSQGSVCSVGNTRALG IVGKTDIKGYPASFMKKIIMNKALFETGGTKEMMAKGRFDLYH >gi|307679030|gb|GL456767.1| GENE 36 28717 - 29622 757 301 aa, chain - ## HITS:1 COG:L187450 KEGG:ns NR:ns ## COG: L187450 COG1575 # Protein_GI_number: 15672164 # Func_class: H Coenzyme transport and metabolism # Function: 1,4-dihydroxy-2-naphthoate octaprenyltransferase # Organism: Lactococcus lactis # 1 298 1 298 301 286 53.0 2e-77 MNREIFFELVELKAKTASVLPFLLGICFSWYQYGRLHVGYVLIFFIAMFIFNMAVDILDN YNDYHHATEVHDYKEKTNIIGRENLSLPLIRKMIFWMILVSALMGIGLSFIVGWPLLIMG LYCYLIGIFYSSGPKPLSSLPLGEVFSGFTMGFMITLICVYINTFEVFNWSAANLWGIFL VALPNTCYIANLMLANNICDLEEDENNKRYTLVHYLGKASSLKLFVGLNTIAMLAILLAV GLGLTPPTMLLMLLTLPFVRKQTQALLKEQVKSKTFVCAVKILAVGATAQVLFFAIGLWW L >gi|307679030|gb|GL456767.1| GENE 37 29744 - 30724 1144 326 aa, chain + ## HITS:1 COG:L186258 KEGG:ns NR:ns ## COG: L186258 COG0142 # Protein_GI_number: 15672163 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Lactococcus lactis # 1 326 1 326 326 304 45.0 1e-82 MNTFWKSFPDVERSLTETCELIEQTLHTRNEDIEEALVTLARSGGKLLRPAFFFLFTQLG DEEKQEKQQLLKIAASLEILHMATLIHDDIIDDSPLRRGAVTIQSQYGKDVAVYTGDLLF TEFFTLIADAMNGSEFMKINAQGMKRLLLGELDQMSHRFDRRMSIPAYLRSVNGKTAELF SLSCLEGAYFGHSSKEVQRLAKRIGRHIGIAFQVYDDILDYTADTETLKKPALEDLSQGV YTLPLLFAYQAAPDVFSPYLDKGRAITLEEAAEVAALVNDYHGVTEAQAFAKKVTNKAIT DIQQLPDGTAKETLLSLTELLLHRSF >gi|307679030|gb|GL456767.1| GENE 38 30804 - 32567 231 587 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 312 568 91 354 398 93 26 3e-18 MEKQPTTKDVWKNDQWVRPFLKRYKKTLYFALLLGFLTFFSAGALMFTSGYLISRAASLP ENILLIYIPIVLTRAFGIGRPVFRYVERLTSHNWVLKMTSDLRLKLYNVLEKDAIFFKTK YRTGDILGLLSEDINHIQNLYLRTIFPTVIAWILYIFLVIALGFFSWWFALCMLLMLGVV VFLLPLVSVLVNGARQEKHKYAKNELYQTLTDNILGVSDWVFSQRGSEFVARYETDEANV RALDEKMKQFNRGRDFVLQLLFGVIAIAVLAWTSVRFPGNHGGAANWIGAFVLTVFPLID AFAPLPAAAQETTIYKDSIRRFNELPEGEDDSTEAPVQPNGTSLSIEHLSFAYENQAKKV LNDLSLTIPEKQKLAILGRSGSGKSTLASLIRGDLRPTSGEILLGNIPTEAFGETMTEYI GVMHQAPYLFRTTILNNIRIGREEASEAEVWAVLEKVGLKEMVTQLPEGLQTMVDEAGLR FSGGERHRLALARILLQDTPIVLLDEPTTGLDPITEQQLLETFFEALKDKTVIWITHHLQ GVTLMDQVIFIEDGQLEMSGTPEELLATNAHYQKLYRIDRGISSFEE >gi|307679030|gb|GL456767.1| GENE 39 32567 - 34300 173 577 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 348 560 15 228 245 71 27 2e-11 MIDKDILQMPKIKKILVLLAGFSFLQAVFIIGQAFFLSKAIVGLWSGGHLNQQLQSILLF FIFYLGRHVITYFRERMLDTFSYERSKELREQLLTKIFRLGPNVVQKNGTGNMVTMALEG ISQTENYLQLILTKMMNMMIIPWIILAFVFTQDIRSGVTLLIVFPIIIIFMIVLGYAAQS KADKQYAAFQMLSNHFIDSLRGIDTLKLFGLSKKYAGSIYHTSERFRKATMSTLKIAILS TFALDFFTTLSVAVVAVFLGLSLLNGTILLFPALVTLILAPEFFLPIRDFSSDYHATLDG KNSFQAIQAVLALPEAEQTDVLTLDDWHQESQLSVTALNFSYEDATQEAIQSLQFSVDGR KKIGIIGASGSGKSTLINLLSGFLLPTEETSQLAINGQTIPHFLQKDWQKQILYIPQAPY IFQDTLANNIRFYTPEATDEAIQQAIQLVGLDELVKDLPEGIHTLIGESGRMLSGGQAQR VALARAFVDQKRHVLLFDEPTAHLDIETEVEMKERMLPLMNNHLVFFATHRLHWMEEMDY ILVMEKGQLVEQGTLAELIEKDGYYVQLMKQMRGGRQ >gi|307679030|gb|GL456767.1| GENE 40 34305 - 35318 1127 337 aa, chain - ## HITS:1 COG:L109201 KEGG:ns NR:ns ## COG: L109201 COG1294 # Protein_GI_number: 15672687 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 2 # Organism: Lactococcus lactis # 1 330 1 331 331 357 61.0 2e-98 MSTLQLLWFVLIGVLFSGFFFLEGFDFGVGMAVQTLAHNDDEKDQVVATIGPVWDGNEVW LLTAGGAMFASFPYWYASLFSGYYLILFTILFGLIIRGVSFEFRHNMPEGKRRRMWNWTL SIGSFLVPFFFGILFISLVQGMPLDANGNMHAQFTDYFNLFSIVGGVALTLLCYLHGMNY IALKTEGPIRERARNYAEILYGVLYVGLVVFAVLMYFKTDFYEKNFAVTLILTLAIVVLT VIANVGVFKRKEMLAFLASGLTLVVLVALLFSGLFPRVMIGSEGFDLLIKDATSTPYTLK IMTWISLSILPFVLAYTAWSYYIFRKRISQTAVPEGY >gi|307679030|gb|GL456767.1| GENE 41 35315 - 36733 1552 472 aa, chain - ## HITS:1 COG:L107726 KEGG:ns NR:ns ## COG: L107726 COG1271 # Protein_GI_number: 15672686 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 1 # Organism: Lactococcus lactis # 1 446 1 451 491 543 60.0 1e-154 MFDIVTLARIQFAMTTVFHFFFVPFSIGLALVVAIMETMYVVKKEERYRKMAKFWGNIFL LSFAVGVVTGIIQEFQFGMNWSDYSRFVGDIFGAPLAVEALLAFFLESTFLGLWIFTWDK MNPKVHVTFIWLVVFGSMMSAFWILVANSFMQHPVGYVINNGRAEMVDFVAVISNPKVWY EFSHVIMGAFTLGGMAVAGMAAFQLLKKRDISFHKASMRIGLWVTLFGSIGVLLAGDLQM KALIEGQPMKFAAMEGAYEDSDDPAAWTLIAWADEREHKQVFGIDIPYMLSILSYNKLSG SVDGMDTVNKRLVEKYGDDKNYYPPVNTLFWSFRIMAGFGALMLLVAALGLFFTRKKKPS LYEKKWMLWIVALCTFAPFLANTTGWLVTELGRYPWTVYGLFTIEQSVSPNVSVASLITS NVIYFLLFAGLGSVMVYLVILELRKGPDYEAKKLAKENEPALDPFDKGVFGE >gi|307679030|gb|GL456767.1| GENE 42 37465 - 38328 967 287 aa, chain - ## HITS:1 COG:BS_ydeE_2 KEGG:ns NR:ns ## COG: BS_ydeE_2 COG3708 # Protein_GI_number: 16077584 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 124 284 1 161 163 132 39.0 1e-30 MLANLNQAMDYIEEHLTEEVSFDELAKKTGISVYHFKRTFSFITGMSLAEYIKKRRLAEA NLALLAGEKVTDVAFKYGYQSIEGFSRAFRDWSGQAPSEVMKTQIQKTFPKFSFYIDIKG GQSMDVKLIEKPAFQIVGVSQKVPLQYQGENQAIMELAQRITPQQRAEMHTFDDIYPYQV VNASFDFQEGRTTEGGEMTHMIGFATSQENTYEDLEQLSVPAHTWAVFPNEGPFPQTLQE TWARIFSEWLPSSGYQVVAAPEISFTQYQGPAEAKYSEIWLAVTATK >gi|307679030|gb|GL456767.1| GENE 43 38413 - 40713 1998 766 aa, chain - ## HITS:1 COG:CAC2947_1 KEGG:ns NR:ns ## COG: CAC2947_1 COG0550 # Protein_GI_number: 15896200 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Clostridium acetobutylicum # 75 657 1 615 618 459 42.0 1e-128 MRLLLKIKLSLPQYPIILAKQNSANGKLFETHEFKEKPQGIFFKLFFYSRNLEKIEPIFG IIRKDSTQKGAKLVVAKQLIIAEKPSVAKDLSRVLGANQKNKNYYEGPNVIVTWALGHLL GLKMPEDLNKEWQTWQMETLPMIPKNLGIKPLPKTGHQLKAIKQLANRKDVSEAVIATDA GREGELVARWILEYVRFNKPVKRLWISSQTDKAIKDGFKKIRPAKDYDNLYYSALARAKA DWLVGLNVTRALTVKYQDNLSAGRVQTPTLAMVRQQEKTIEQFKPQTYFTISLTVESEKA KMTQKNPYALKERQEAEQLVKELSKQKGLVTDIQEKVKTENAPLPYDLTEIQREANQRFQ FSAKKTLSLVQSLYETHKIVSYPRTDSKYLTTDMKGTMKERLQAIADFSPEVKGYLKNGA VVKQQKVFQNAKVTDHHGLIPTEQRPRYEKLSNDEQKIYQMIVQRFLGLFAEPNQTKQTK VTVAFGKETFVFHQNKVVVAGWKTTAEQPLSIVQWQKGMTVAPNFTINKELTSPPKPLTE GTLLGKMEKHSLGTPATRAEIIEKLIKSELMERTNSGLSVSAKGKQLLDLVNPSLVTPEL TEKWEKSLEAIASGQQKSQLFLKDIEEDTKKLVREIKQSEKKYQDFSITQKKCPDCGSNL REKNTKDGKIYVCTNQECSYRRRKDPKVSNHRCPQCHKKMVIIEGKNGRSFKCKFCSITE KIPDKKERKQKMTKHEERRLMKKYSQPDEPEESALAQALKAAMNQE >gi|307679030|gb|GL456767.1| GENE 44 40625 - 40990 346 121 aa, chain - ## HITS:1 COG:L100735 KEGG:ns NR:ns ## COG: L100735 COG4699 # Protein_GI_number: 15673831 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 1 119 1 119 122 99 43.0 1e-21 MYQVITMYGDNEPWWFFDDWQEDIVQEKTFDNLTDAETYYVEVWQKLSQNYTYVNTKPNY LTAFWNDGEERWCEECDEDLQQYFGLALLENHHAVTFENKAEFTTISNHFGKTKFCKRKV I >gi|307679030|gb|GL456767.1| GENE 45 41088 - 41657 818 189 aa, chain - ## HITS:1 COG:CAP0028 KEGG:ns NR:ns ## COG: CAP0028 COG1309 # Protein_GI_number: 15004732 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 3 185 2 183 187 171 50.0 8e-43 MAKKRNLTKAKILESARNLAEELGVQQLTFQNLAVDLGIKYPSLYNHFKNIAEVKNALVD LLIQELNDALRRALVGKSGAEAIRIYAETYQQFAFENSAVYELLISVPKTQNQQLIEGIH ETNQIILQLLAFYPFNNEERLHKSRELRSLIHGYITLRFLGYFQREEATPEESYRRMIED FIASLEVAG >gi|307679030|gb|GL456767.1| GENE 46 41790 - 42305 515 171 aa, chain + ## HITS:1 COG:BS_yxkA KEGG:ns NR:ns ## COG: BS_yxkA COG1881 # Protein_GI_number: 16080938 # Func_class: R General function prediction only # Function: Phospholipid-binding protein # Organism: Bacillus subtilis # 1 170 3 165 168 115 38.0 5e-26 MHITNRSHLADRYGKRTSAEFLLHERPILSFPISLAAIPKEARYLSWELIDYDTIPLIGF PFIHWLAANVPVTNEIPEDFSRTALKPTIQGKNSLASPLGKQMIPALATETLPELTERYL GLSPRSGVHTYTLYVYATKNPLNLKEGFFANELHQALNDQLLAKAKFEFLY >gi|307679030|gb|GL456767.1| GENE 47 42322 - 43560 1193 412 aa, chain + ## HITS:1 COG:lin2884 KEGG:ns NR:ns ## COG: lin2884 COG0477 # Protein_GI_number: 16801944 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 16 411 4 399 402 423 54.0 1e-118 MYELIKSKIFRPRQPWEKNLLVLWFGTFMAGIGFSLVMPFMPLYINTLGTFTHQQLNFWS GITFSSTFLVTTIVSPWWGRLADRKGRKLMLLRASLGMAIVISLMGAVTSVYQLIGLRLL QGVFSGYISNATALVATGTPKEKSGQVLGTLATGSVTGTLLGPLLGGVTASIFGYRPTFF ITGTILLLVFVLSLVFVHEEFVPIEKNQAASGKQILKKLEHPHVILGMFITTLIIQASNN SISPIISLYIQQLLGGHGNVTLISGVIASIPGIATLIAAPRFGRLGDRIGSERILTIGLI LAIFVYLPMAFVQNVWQLAMLRFLVGISDACLLPAVQTLITRYSPSDAAGRIFSYNQSFQ ATGNVIGPMIGSSVSAAFGYRGVFISTSCLVLINLLWVRRSTAELKKEKNDD >gi|307679030|gb|GL456767.1| GENE 48 43740 - 44864 1382 374 aa, chain - ## HITS:1 COG:SPy2188 KEGG:ns NR:ns ## COG: SPy2188 COG0482 # Protein_GI_number: 15675922 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Streptococcus pyogenes M1 GAS # 1 374 1 373 373 561 76.0 1e-160 MADNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCTATEDYKDVA KVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQLG ADYVATGHYAQVETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGMEKSEVR AIADRAGLATAKKKDSTGVCFIGEKNFKEFLSNYLPAKKGNMVTEDGEIKGQHDGLMYYT IGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVHFTVDTPM PKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVFYDGMECLGGGL IDRAYQDEKELQYV >gi|307679030|gb|GL456767.1| GENE 49 45090 - 45434 436 114 aa, chain - ## HITS:1 COG:no KEGG:EF2071 NR:ns ## KEGG: EF2071 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 114 1 114 114 208 100.0 5e-53 MAFTTTAAVEGSTVFYKVHPSAKRYTLKDNGFTETKSGNFQLIRSLDPTPQRNEGFKLKI TITADLKELKMSITTANGLKPMNIFKNEQHEMSKEKYFFLMDGLISRGVLEKVE >gi|307679030|gb|GL456767.1| GENE 50 45502 - 46647 1165 381 aa, chain - ## HITS:1 COG:lin1548 KEGG:ns NR:ns ## COG: lin1548 COG1104 # Protein_GI_number: 16800616 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Listeria innocua # 4 381 5 381 382 409 56.0 1e-114 MEPIYLDHAATTPLHPTVIQAMTENMQTTFGNPSSIHQFGRKAYGLLEEVRQTIAESLQA KPHEIIFNSGGTEGDNTAILAVAFSRQKEGKHIITTAIEHPAVLRTMEYLETLGFEVTYL PVNENGQISMDQFKKSLREETILVSMMYGNNEIGNRLPIAEVGAILKNHSAIFHTDAVQA YGSEVILPHELGIDLLSISAHKINGPKGVGFLFKSDAIQLPPLLHGGEQEEKRRAGTENL AGIIGMGTAVSLLTSAEKQARKTAYQSFQTIILKALEEANIDFSINGEPTNRLAHVLNLH LKGVPSDLLLMHLDLRGIAISTGSACTAGTVDPSHVLTAMYGENSSAIKESIRISFGYGN TPEEIATFSEVLVAVIQQLKK >gi|307679030|gb|GL456767.1| GENE 51 46804 - 47778 1230 324 aa, chain - ## HITS:1 COG:SPy1123 KEGG:ns NR:ns ## COG: SPy1123 COG0462 # Protein_GI_number: 15675103 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 324 1 323 326 416 61.0 1e-116 MTENYQDDTLRIFSLNANRPLAEKIAASVGTELGKSTVRQFSDGEIQINIEESIRGDHVY IIQATNAPVNDHLMELLILIDALKRASAKTINVILPYYGYARQDRTAKPREPITAKLVAN MLVEAGATRLLTLDLHTVQVQGFFDIPVDNLFTMPLFAHYYRQQALVGEEIVIVSPKNSG VQRARSLSEYLDATLAIVDHEEIDGVRQEGYVIGNVAGKKCILVDDILNTGQTLATAAEV LMKNGAQEVYACASHGLLSEGAKATLENAPIKEISITDSVYTTTDRQPATLNIISCAELM GEALLRIHENKPMSPLFRLEPKGE >gi|307679030|gb|GL456767.1| GENE 52 47991 - 48740 191 249 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 22 226 17 227 245 78 28 1e-13 MRKSFNLAVQALTVQYQGRTALNNIHVTIPSGKITGIIGPNGAGKSTFIKGLLGLIKTKE RNVLLNNQAIDQQKTTIAYVEQRSALDLSFPISVFETVLLGTYPNLGLLKRPGKKEKQAA MAALKMVQLEDYAQRQIGELSGGQLQRVFIARVLAQGAEVIFLDEPFVGIDMSSEKVIMD ILKSLKNQGKMIIIVHHDLHKVSHYFDELIVLKNRLIAAGPVEQTFTAETLQEAYGDLLG DLLIQGVAK >gi|307679030|gb|GL456767.1| GENE 53 48737 - 49606 1000 289 aa, chain + ## HITS:1 COG:lin1962 KEGG:ns NR:ns ## COG: lin1962 COG1108 # Protein_GI_number: 16801028 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Listeria innocua # 5 282 3 280 280 284 67.0 1e-76 MIAAFIDGLFRYQFLQNALLTSIIVGLISGVIGSFIILRGMSLMGDAISHAVLPGVAVSY MFGFNYIFGASIFGLLAALSIGFITQKSPLKNDTAIGVVFSSFFALGIIFISFAKSSTDL YHILFGNVLAVADTDILITCVVGVIVLIFVALFYKELQLTSFDPTMAQAYGLNIQFFHYA LMFLLTLVAVSSLQTVGTILVIAMLITPAATAYLLTNHLPTMIGLASTFGILSSVIGLFF SYSYNLASGATIVLTAALFFLLAFFFSPKKGLVFVNREKEMEESTNEKI >gi|307679030|gb|GL456767.1| GENE 54 49593 - 50519 1378 308 aa, chain + ## HITS:1 COG:lin1961 KEGG:ns NR:ns ## COG: lin1961 COG0803 # Protein_GI_number: 16801027 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Listeria innocua # 15 305 14 308 310 347 61.0 2e-95 MKKFSLFFLTLLAGLTLAACGNQAAEKKEKLAIVTTNSILSDLVKNVGQDKIELHSIVPI GTDPHEYEPLPEDIAKASEADILFFNGLNLETGGNGWFNKLMKTAKKVENKDYFSTSKNV TPQYLTSAGQEQTEDPHAWLDIENGIKYVENIRDVLVEKDPKNKDFYTENAKNYTEKLSK LHEEAKAKFADIPDDKKLLVTSEGAFKYFSKAYDLNAAYIWEINTESQGTPEQMTTIIDT IKKSKAPVLFVETSVDKRSMERVSKEVKRPIYDTLFTDSLAKEGTEGDTYYSMMNWNLTK IHDGLMSK >gi|307679030|gb|GL456767.1| GENE 55 50574 - 52112 1744 512 aa, chain - ## HITS:1 COG:CAC3339 KEGG:ns NR:ns ## COG: CAC3339 COG0488 # Protein_GI_number: 15896582 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Clostridium acetobutylicum # 1 509 1 512 518 429 44.0 1e-120 MSILTIEHLTHRFGEKVLYEEASLQVNKGDHLGLTGQNGVGKSTLIKILTGEVLPDEGTI QWQKNCKIGYLDQHVSVEQSLTMVDFLKQAFQELFDKEAKLTKLYEEYSQTASEKLLEQA GKLQTDLDESNFYQIDTIIQDLANGLGLQAIGLDKKLGELSGGQRSKVILAKLLLEAPDV LLLDEPTNYLDDTHIQWLVRYLNNFEGSFLLVSHDYQFLNEVTNCIADIEFGKLTKYTGN VEKSFAQKEQNKQTYLKQYQAQQEKIEKMEAYIRKYKAGNRATMAKSRQKQLDRLERLTP PGSLTKPAIEFPYQGLVATQALTTQKLVVGYREPLLEPLDLMVHVGEKVALKGFNGIGKS TLIKTLTKVIPSLDGEFHYPLNTKIAYFTQDLAWPNEQLTPLDYLSDRFPDTTIKERRSH LARAGLPDKLAMQSLALLSGGEQTKVKLAELMMQTSNLLFLDEPTNHIDEAAKKSLQEAI HVYPGTVFLVSHEADFYEEIVDRVIDIEELVK >gi|307679030|gb|GL456767.1| GENE 56 52260 - 52367 74 35 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFFVLTDKLTRKVAPDSLRTDEALLWSRAINFFIA >gi|307679030|gb|GL456767.1| GENE 57 52482 - 53675 1776 397 aa, chain - ## HITS:1 COG:lin0542 KEGG:ns NR:ns ## COG: lin0542 COG1473 # Protein_GI_number: 16799617 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Listeria innocua # 9 397 5 390 393 266 38.0 4e-71 MSTTTIQTIQEAIATEKEWIIHLRRHFHQYPEASLKEYETIKRIKEELLALAIPFVEVGE TGVLATIEGSLGAGKTILLRADIDALELPDATGAAYASKNPGLNHACGHDGHAAALLGAA KVLKKHQDTFSGTIKLAFQPAEEIGAGARQFVEGNYLEAIDQVFGIHLDSSVPVGKLVAT KGATNASCDIFKIEVSGQSSHVAQPQNGRDAVLAAASIVVELQKIVAREIDPLDSVVVGI GVLQAGTRYNIVANQATIEGTVRTFSQETRQFVLQRVEEIAHEIAQSHRTEIADFSVYAA ANPLINEEQATNRAQQVASEIVGFENVVTDHPKSLGADDFADYLAVIPGIYGRVGSRNPE NPATHFGHHHEQFDIDERALLLAAEYHVRYALNYLSE >gi|307679030|gb|GL456767.1| GENE 58 53690 - 54523 1135 277 aa, chain - ## HITS:1 COG:L118475 KEGG:ns NR:ns ## COG: L118475 COG1464 # Protein_GI_number: 15672301 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Lactococcus lactis # 26 271 32 281 286 212 50.0 7e-55 MKKFSKLIGLIGVLAFTIAGCASGSAKDTKEETVKLGVVGTKNDEWESVKDRLKKKNIDL QLVEFTDYTQPNAALAEKEIDLNAFQHQIFLDNYNKEHGTKLVSIGNTVNAPLGIYANKL KDITKIKDGGEIAIPNDPTNGGRALILLQTAGLIKVDPAKQQLPTVSDITENKRQLKITE LDATQTARALQDVDASVINSGMAVDAGYTPDKDAIFLEPVNEKAKPYVNIVVAREEDQEN KLYQKVVEEYQQEETKKVIAETSKGANVPAWETFGKK >gi|307679030|gb|GL456767.1| GENE 59 54543 - 55223 996 226 aa, chain - ## HITS:1 COG:L122401 KEGG:ns NR:ns ## COG: L122401 COG2011 # Protein_GI_number: 15672305 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Lactococcus lactis # 1 226 1 230 231 184 53.0 2e-46 MYQLFEKYFPNVVQLKQEFLQSTWETLYMVFWTALIAGVLGVLLGVVLVSTGPSGVLKNS PLYSVLEKIINVCRSIPFIIMLALIQPLTRILAGTTIGTTAALVPLVIGVIPFFARQIEN ALLEVDPGVIEAAEAMGTSPLGIIFRVYLIEGLPSIIRVSAVTIINLIGLTAMAGAIGAG GLGNLAITRGYNRFQTDVTFMATLIILIMVFISQAISNQLIKKTSH >gi|307679030|gb|GL456767.1| GENE 60 55242 - 56312 1200 356 aa, chain - ## HITS:1 COG:SPy0320 KEGG:ns NR:ns ## COG: SPy0320 COG1135 # Protein_GI_number: 15674484 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Streptococcus pyogenes M1 GAS # 1 342 5 351 354 362 55.0 1e-100 MIELKNISVTFQQKKQEIQAVQDVSLTIDKGDIYGIVGYSGAGKSTLVRVINLLQRPTAG TVIINKENILTFSKKELRQQRKKIGMIFQHFNLMKERTIFSNIDFSLKYSGLSKSERRQK ISHLLELVGLSEKRDAYPSQLSGGQKQRVAIARALANDPEILLCDEATSALDPKTTGQIL ALLKKLNQELNLTIVLITHEMQVVKEICNKVAVMENGCVVESNDIVSIFSQPQQPLTKDF IRTATHIDQALTTILEHPKLADLDKNQELIEFSYVGDQTNEPLIAQLYSQYQVYTNILYG NVEIVQNVPIGHLIVVLSGDEAQRQQALTYLAKQGVRTNVLKTYQQTKQKQNLQVI >gi|307679030|gb|GL456767.1| GENE 61 56417 - 56554 72 45 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLPPHVQNLLTQIPFSSTEQYVRYPSSITGAPVAALCLTLGALAQ >gi|307679030|gb|GL456767.1| GENE 62 57865 - 59355 864 496 aa, chain + ## HITS:1 COG:no KEGG:EF2146 NR:ns ## KEGG: EF2146 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 496 1 496 496 860 99.0 0 MMKQLPTESKKFDLKNWCIENKAYLLLIILIYQVAVLSIGIINFPYLDDNARQVAGMTDF GTTYARWGSEFLSWFVQGSRHLTDLGLTTPILTGLILSLTSILAIYIINDQKISWGSSLV ATLIGLNPWFLQCLSFRFDSPYMALSIFCSFLPFYWWQRNSFTFFLVSVFSLFVMFNTYQ ASSGIYIVIVLFLTFKQLLAGENFIALCKKVALAAIAYLLSIVSYLIELKFVPSATNNIG GSQALPSLHDIPSVAYQNSYHYFSELLNQSNRLWLLLLLLLLVLFFISHLSNSKINLGLS FLYCILYLGLASLLSFGIFIVYSRNIAGDAPRYIYGFAVFVTISMLSLFNNRQVKAIYLT SLLVASLLSYYILSFVLVYSSTLNYQKEAFNRQAAVLTDDLKNVVTNERKKVYLNTFFKN STVYANTSRNYPILSKIVPPNDGLYFPNYVWFNTSSNLGVEMAPLTDTDMSKNQKVVSNH FYDIYTNNKEIFVFMK >gi|307679030|gb|GL456767.1| GENE 63 59569 - 59748 175 59 aa, chain + ## HITS:1 COG:no KEGG:EF2147 NR:ns ## KEGG: EF2147 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 59 5 63 63 87 100.0 2e-16 MRTRQKKLFLFSMILWLVEFLITRISDSFPGATPLFVVICLIQGILFTYFCLAFFYYPQ >gi|307679030|gb|GL456767.1| GENE 64 59836 - 60801 1112 321 aa, chain - ## HITS:1 COG:no KEGG:EF2148 NR:ns ## KEGG: EF2148 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 321 1 321 321 503 98.0 1e-141 MSTIHEFPKNYERFIAQGEEALVEHNQIAALENFQQAYQLQQTPPVNQKIVQLLLEMGEA DEALALAEAFQETYFENLETAAIYMQIYSQSRRFIEGYILLKQLLQTKKITLAQQKTLEQ QLMQVEEAYQQLETQQIQAIKRNLLVSDQLPVYQQLANIKTSLYLPKPVFVEVAKDLVMN QALSYFAREWFIEELALLQFSEPLTFLWYDNQPQTVLLEGKTGPLNTPIYSKICTELRNR LENDDPIMLQHLEEEIRLHFAYLYPLAETVISDPTIWVLGYLATYYPEYIEKELTEAKGH QIAAVQKVQQPIRTAFTQIML >gi|307679030|gb|GL456767.1| GENE 65 60977 - 61267 471 96 aa, chain - ## HITS:1 COG:no KEGG:EF2149 NR:ns ## KEGG: EF2149 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 96 1 96 96 145 96.0 7e-34 MENQVEVMTYAQLKEIMQVLEANEAITEDTKVFIDTGWDSVQEVAPDAVSIEKVAKFTVA DVLTNESFAGYSLEEKAEKMNAEGDLEMAIIIRNLY >gi|307679030|gb|GL456767.1| GENE 66 61315 - 62553 1398 412 aa, chain - ## HITS:1 COG:SP0616 KEGG:ns NR:ns ## COG: SP0616 COG2348 # Protein_GI_number: 15900524 # Func_class: V Defense mechanisms # Function: Uncharacterized protein involved in methicillin resistance # Organism: Streptococcus pneumoniae TIGR4 # 4 408 3 407 410 276 36.0 6e-74 MDQFSTLTEQEFTTFAMTHPAGNFLETPEMKHLLERRGWHCEYVGVKREGQLIAACILSK KKVKIGYAFDIDGGILMDYTDKKCIEAFFTGLKKYVKKNDGLYLTFTPNKQICLRDFNGG EVEKVNQETFDYFTSIGFEHQGFDVHNFDGAPRWLFVKDMAGLTEEDLWKSYGKDAKYDI KKTWEYGVTTRELRYEELPLFKKLTEETSARRNFEDKDLAYYQAVYEEFGERAKFMVAEL NFATYLENLHEKLRKLQETLNEVNEALIANPKSRKKNNQKREFEDEVRTVRKRIDEAKEM KTSDEPEILAGALFIVHPQEVVYLFSGTYEKYKQYYAPYLIQHKMLTYTVENNIPKYNFY GVDGVFDGSDGVLKFKQSFGGHVEELMGNFQWKAKPMKYALYHALKTIKEKV >gi|307679030|gb|GL456767.1| GENE 67 62864 - 64672 2257 602 aa, chain - ## HITS:1 COG:SP0266 KEGG:ns NR:ns ## COG: SP0266 COG0449 # Protein_GI_number: 15900200 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Streptococcus pneumoniae TIGR4 # 1 602 1 602 602 743 63.0 0 MCGIVGMIGKENVTESLIQGLTKLEYRGYDSAGICVNDQSQQPHVVKAVGGIADLAAKLT PEIDGTVGIGHTRWATHGEPTVANAHPHVSSDQRFALVHNGVIENFEELKEQFLSGAHLI GDTDTEIVVQLIAHFAENGFSTKDAFKAALAEIKGSYAFALMDKMDPNTIYVAKNKSPLL IGLGEGFNVICSDAMAMIKETNQFVEIVDGEIVTVTADKVVIETPEGQVINREPFEAQLD LNDIEKGTYPFYMLKEIDEQPAVMRKIVQAYTQGEKVTLDEALLEKINQCDRIYIIACGT SYNAGWVGKSLIETIASIPVEVHLSSEFGYNMPILSEKPFFIFLSQSGETADSRQVLVQV NELGHPSLTLTNVAGSTLSREADDTLLLHAGPEIAVASTKAYTAQIAVLAILAKAIGEER QTLAAVSFDVAHELSVVAAVMETLIDEKQQMKALVEDYLTYTRNAFYIGRGVDYYVSMEA ALKLKEISYIQAEGFAAGELKHGTIALIEEGTPVIGIVTDAKVAAHTRGNLKEVESRGAR NIVIALESLAKPQDQLIIPDVHPLLSALVSIVPGQLLAYYATLQRGYDVDKPRNLAKSVT VE >gi|307679030|gb|GL456767.1| GENE 68 65115 - 65948 910 277 aa, chain - ## HITS:1 COG:SA2475 KEGG:ns NR:ns ## COG: SA2475 COG0619 # Protein_GI_number: 15928269 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Staphylococcus aureus N315 # 1 277 1 277 277 312 57.0 5e-85 MSERQMLGYHPDSTWIHRLNGTSKLVFLIVVSVACMTTYDTRYLLGMSVVSLVLLKLSNI KWHQISFVIKFIAIFSLLNILTVYLFAPEYGVDLYQSRTVIWEGIGRFTLTQEELFYEFN LVLKYFCTIPLALIFLLTTNPSEFASSLNRIGVSYRISYAVALAIRYIPDIQEDFFNISL AQQARGYEMSKKGRLGQRIKGVAQIVLPLILSSLDRIETVSTAMELRRFGQKKNRTWYAQ QPFHLRDFSVMILALCLLGISFWLFHVNGGRFYNPFQ >gi|307679030|gb|GL456767.1| GENE 69 65945 - 67651 278 568 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 305 556 134 384 398 111 31 1e-23 MKKPIITFNNFSFQYHSQSEPTLKGIQLTIYEGEKVLIVGPSGSGKSTLAQCINGLIPNI YEGEIQGTATVAGKNIQETSLFDLSFDVGTVLQDTDGQFIGLTVAEDIAFALENDAVEQA EMKKAVHKWSEIVELNQLLQHRPQDLSGGQKQRVSMAGVLINQSKILLFDEPLANLDPRA GQETMTLIDTIQQETKATVLIIEHRLEDVLCESVDRIIVMNEGAIISDTTPDELLRQDTL TQQGIREPLYVTAMKYAGIDLTQVSHLDKLAEVSGETVLPKMTQWSVQPSSVSAVKGAEL LRLEQVSYQYDRHGEKVLDDFSVTIHHGEMISIVGKNGAGKSTLSKIICGFITPQSGKIL WEGQDFSNYSIKERADKIGYVMQNPNQMISKKMIFEEVALGLVLRDVPQAEIEERVTNIL HICGLYPFRNWPISALSFGQKKRVTIASILVLEPELLILDEPTAGQDFKHYTEMMTFLEE LNRLGVTILMITHDMHLMLEYTTRALVVCDGRLLADATPVAVLTDEKLIQAASLKETSLF TFAKALGLENPLLFTEKFVAYDREVRFG >gi|307679030|gb|GL456767.1| GENE 70 67752 - 68303 448 183 aa, chain - ## HITS:1 COG:SA2477 KEGG:ns NR:ns ## COG: SA2477 COG4720 # Protein_GI_number: 15928271 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 2 183 3 184 184 234 67.0 4e-62 MKEKMSVKTIVAIGIGSAVFVILGRFVVIPTGIPNTNLETSYPFLALMSVVFGPVAGGLI GLIGHTLKDFTTYGSAWWSWIICSGIIGIIFGFAGRKMDLQHGEFTTNDMVRFNIFQAFG NIVVWGLIAPSLDILIYSEPASKVFTQGVFATVSNIVAVGIIGTLLMKAYASTRTKKGSL SKD >gi|307679030|gb|GL456767.1| GENE 71 68533 - 69888 1934 451 aa, chain - ## HITS:1 COG:SPy1038 KEGG:ns NR:ns ## COG: SPy1038 COG1109 # Protein_GI_number: 15675035 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Streptococcus pyogenes M1 GAS # 1 451 1 450 451 606 71.0 1e-173 MGKYFGTDGVRGIANKELTPELAFKLGRYGGYVLSQHEDSSRKPRVLVGRDTRISGEMLE QALIAGLLSVGIEVFQLGVISTPGVAYLTRLQKASAGVMISASHNPAEDNGIKFFGADGF KLVDDQEAEIEALLDAEEDTLPRPSAEGLGSLDEFPEGLLKYSQFLVQSIPGDLADMTVC LDAANGATATAVNRVFADLETDFYTMGTSPNGLNINDGVGSTHPEALAEMVVEKGADAGL AFDGDGDRIIAVDELGRIIDGDKIMYICAKYLAEKKRLKKDTIVTTVMSNLGFHKAVEEI GLKDVVTQVGDRYVVEEMRKNDYNFGGEQSGHMIFLDYNTTGDGMLSGIQLLNVMKQTGK KLSELADEVTIYPQKLVNIRVTDKNGAMEVPAIKAVVEQAEAEMNGEGRILVRPSGTEPL LRVMAEAPTQEKVDYYVDKIAEVVRAEIGVE >gi|307679030|gb|GL456767.1| GENE 72 69881 - 71044 1380 387 aa, chain - ## HITS:1 COG:SPy1037 KEGG:ns NR:ns ## COG: SPy1037 COG4856 # Protein_GI_number: 15675034 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 2 312 3 314 318 146 33.0 7e-35 MRKASQKSWFNGLLSLLFALLLFFNANATGNNPSNSGSSQTYSETLNNIPVQVQYDKDKY YVSGFEESVNVHLRSANRIQLNMESNADTRNFQVVADLTKLPLGTSEVPLTVRGLSSAVT AEIEPKTVTVTIEKRVTKKFDVEAQLSDNIEKEGYKVKNISVDPKTVEVTTGEETAKAID KVIAPVSSAKQTIDTIKQTVNVQALDAKGQVLSIENPAPQVKVTVGLTAPTKDVPLNVSM TGTPPAGIAHYNYSLSTYQVRVSGPQSILDTLESIEVPVDISDIRKETKQSVTIPVNGEY VVTPDEVDVSLSPVYNQQQSSNTNETSEEPASSTTVGSGSQAVQPSTSSQVESNTSETTS EGSTVESTTAGSTENTENQVTKENQNG >gi|307679030|gb|GL456767.1| GENE 73 71041 - 71925 968 294 aa, chain - ## HITS:1 COG:BS_ybbP KEGG:ns NR:ns ## COG: BS_ybbP COG1624 # Protein_GI_number: 16077243 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 30 268 14 253 273 291 60.0 9e-79 MSFQLNQLLDLNYWQQVISTDFLSKDFVINIIDILVVWYLVYKLIMLVRGTKAVQLLKGV AVFIIIRILSEIIGLHTLSWLMNQVIMYGVIAAVVIFQPEVRRGLEHLGRSSFFRPNKGA QQEDERIIQAFDKAIQYMSKRKIGALITIERNTGLDEYIETGIDLDADITGELLINIFIP NTPLHDGAVIIKNEKIAVASAYLPLSESNLIPKEFGTRHRAAVGISEVSDAITIVVSEET GDVSLTLNNELIPGLTQEEYLTILRKELISESSEDKKSALQHFIDDVTKGVKRK >gi|307679030|gb|GL456767.1| GENE 74 72122 - 75811 4028 1229 aa, chain - ## HITS:1 COG:lin0824_1 KEGG:ns NR:ns ## COG: lin0824_1 COG0674 # Protein_GI_number: 16799898 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit # Organism: Listeria innocua # 1 416 1 414 414 613 70.0 1e-175 MRKMKTMDGNAAAAYISYAFTELAAIYPITPSSTMAELVDQWSAEGKKNIFGQPVKVVEM QSEAGAAGVVHGSLKTGALTTTYTASQGLLLMIPNMYKIAGELLPSVFHVASRALTTNAL NIFGDQGDVMAARQTGFAMLSESSVQEVMDLAPVAHLASIEASVPFMNFFDGFRTSHEIQ KVAVLDYEELAPLVNQEKLAEFRRRSMNPNHPSVSGMNQNPDIHFQQRETINPYYEKLPG IVQKYMTEINRLRGTNYDLVTYYGAEDAEEVIVTMGSVAQTIEQTVDYLQEQGRKVGFLN VHLYRPFPVETFLEKIPQSVKAIAVLDRTKEPGAGGEPLLLDVQSAMYEADIRPTIIGGR YGLGSKDVLPNQIVAVFDELMKERSAMKKRFTIGIDDDLTYTSLEVGKPLDLTNPKTYQA KFWGFGSDGTVGANKSAIKIIGDHTDKYAQGFFYYDSKKSGGLTVSHLRFGETPIRSTYL IEHSDFVACHTAAYLHTYDLVKGLKKGGTFLLNTIWNDEQLARFLPNQLKRYLAENEIQF YTINAVKLASEVGLGGRINTAMETAFFKLAEIMPFEQVLPILKEEALKSYGHKSMKVVEK NIQAIDKTVELLHQVTVPAEWRTLEVQPRKRSENVSDFVHEIVEPINRQEGNALSVATLA KNGMTDGRMPLGTAAVEKRGVALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTE APEGFIVRDLRGADGLKYRIQVSVKDCTGCGLCVEACPAKGKALVMKPYEEEKEQAMNWA FAMTLRQKENPAKPNTVLGSQFNKPLLEFSGACSGCGETPYVKLLTQMFGDRMLIANATG CSSIWGAAAGVTPYTTNEQGQGPAWSNSLLEDNAEFGYGMLLATQARRERLASKMTEAFS VASDSLRLLMEDWIAHLSESEGTQQRAAKLRAALLEEKTNQPLLEAIYDDQDLFVKPSQW MIGGDGWAYDIGYGGIDHVLASGADVNMLVLDNEVYSNTGGQTSKATPASAIAKFAASGK YASKKDLGMMAMTYENVYVAQIASGANQMQTIKAFEEAEKFPGPSIIIAYTPCITHGLAG GMSQTLKEAKDAVHSGYWSLYRYNPLLREKGKEPMTLDFKKPDFSLMKEFMRQQVRFASL ESSQPDTAELLFNKTINDAKRRFYNYARLAGQEEKIRAKLEKQSEPEITAPENEKPRVKK ERVVDPEVEARRAARRAERAAKRKQREQD >gi|307679030|gb|GL456767.1| GENE 75 75832 - 75912 87 26 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFVKNVSNVWFLRYNKQEYACNYSIF >gi|307679030|gb|GL456767.1| GENE 76 76017 - 77516 503 499 aa, chain + ## HITS:1 COG:no KEGG:lin2693 NR:ns ## KEGG: lin2693 # Name: not_defined # Def: hypothetical protein # Organism: L.innocua # Pathway: not_defined # 9 495 15 496 497 151 25.0 6e-35 MKTLQKNKFIILAFLLLTIIFYFIPYAHDEWMWGSQEGLDLLKNGFQGYNGRYFGNIFAL IITRSVLIKSLFMSGTILLLLTVLTKFTNLSLDRKTTANKKFLLIFSLALLILIPTKLFQ QTYGWPAAFVNFVPPVISLVVFFIIVNYLFTNETANLKHPVLTGIVLSLGTQFFSENISV YITFLAIALCIYSWKTRKMIDSFLLAFLVTSFLSLIIMIINPAYLNAANNTDGYKKINLS LSYFYYKTIGPMAENIFHQNRFINLCIATLTLLISKKQDKDILQSKTMELINKGALFFIS TYTVFSVFIYPYFTISYNRSQDFTALLALLYYLSIFIFILIQFKGNLKAKLLFLFLSIVC TAGPLFIAEPIGPRSFYITYVFWIILILQFIAYYFNLQSEAENNHEILFITKILKQGILI LLTFYTLMFAYTYRVEQQRKEIIDEAIANKETSVKLPLLPNGEYFWEKGTTSEYWIRRYK TFYNIPQEITITFVPMETK >gi|307679030|gb|GL456767.1| GENE 77 77542 - 78882 1461 446 aa, chain - ## HITS:1 COG:lin1337 KEGG:ns NR:ns ## COG: lin1337 COG0174 # Protein_GI_number: 16800405 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Listeria innocua # 7 446 5 444 444 714 75.0 0 MTRKAKTAEEIKHIAEEENVRFLRLMFTDIMGTIKNVEVPVSQLDKVLDNKMMFDGSSIE GFVRIEESDMYLYPDLSTWMIFPWESDHGKVARLICDIYNPDGTPFAGDPRGNLKRALAD MKELGFTSFNLGPEPEFFLFKLDENGEITTDLNDKGGYFDFAPTDLGENCRRDIVLELES LGFEVEASHHEVAPGQHEIDFKYADVVDACDNIQTFKLVVKTIARKHGLHATFMPKPLFG INGSGMHCNMSLFNEEGNVFYDESGEMGLSQTAYHFLGGLLKHARAYTAVCNPTVNSYKR LVPGYEAPVYVAWSGRNRSPLIRVPESRGLSTRLELRSVDPSANPYLTMAVLLQAGLDGI RNELTPPPAVDRNIYVMNEEERQHAQIEDLPSTLHNAIKELRKDQVMIDALGRHIFANFV EAKRMEWAAFRQTVSEWEREQYLELY >gi|307679030|gb|GL456767.1| GENE 78 78925 - 79308 449 127 aa, chain - ## HITS:1 COG:SPy1878 KEGG:ns NR:ns ## COG: SPy1878 COG0789 # Protein_GI_number: 15675697 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 115 1 112 123 144 67.0 5e-35 MREKELRRSMSVFPIGTVMKLTDLTARQIRYYEEQGLIHPERSEGNRRMYSLNDIDVLLE IKDYLSDGLNMAGIKRVYEMKLEEQKNTAEATRPLTDADVRQILYDEILSQGGLTQQNPF QSNVPRL >gi|307679030|gb|GL456767.1| GENE 79 79510 - 80751 582 413 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 [Roseobacter sp. AzwK-3b] # 24 390 30 406 425 228 38 7e-59 MTTHEKVILVGVETEKNYQTFSASMEELANLTETANGEVVFVLTQKRPQVDRQTVIGKGK LEELIQLTDAYEADLVIFNHELTPRQNQLLSEALAVRVIDRVQLILDIFALRARSKEGKL QVELAQLDYLLPRLAGQGKQLSRLGGGIGTRGPGETKLESDRRHIRNKILGIRRELKEVT AHRERSRQKRQNSELFQIGLIGYTNAGKSTILNMLTTAGTYSEDQLFATLDPLTKKWQLP QGMEVTLTDTVGFIQDLPTQLIEAFQSTLEESRTMDLLLHVVDASAPDRLQHERTVQTLI KELALENIPCLTVYNKRDQVDSKEFVPTLFPNVLISTKISEDKERLVQAIRAQMMELLEP YQLEISPTDGQLLSELRRMTLMISEEYAENENRYIVKGFAKKESKWLAESEKE >gi|307679030|gb|GL456767.1| GENE 80 80755 - 81684 864 309 aa, chain - ## HITS:1 COG:L15012 KEGG:ns NR:ns ## COG: L15012 COG0324 # Protein_GI_number: 15672608 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA delta(2)-isopentenylpyrophosphate transferase # Organism: Lactococcus lactis # 3 303 5 293 294 281 53.0 1e-75 MEKVLVIVGPTAVGKTALSIALAKKFNGEIISGDSMQVYRSLDIGTAKVTETEKEGIPHY LIDCREVSETYSAADFQKEGRQKIKEITEKGKLPIIVGGTGLYIQSLLYDFQLGSREIDD SPEIRETYNLFAEEKGNQALWQLLQQKDPLAADSIHFNNRKKVIRALEVFDKTGYSILTP KEKPARLYDYYLLGLETDRALLYERINQRVDQMMTEGLVEEAKQMFQQPHAQAAQGIGYK EFFPYFSGEQSLEMAVETVKQQSRRYAKRQLTWFRNRMAAHWWDLVQQPTDLPKLEKEVA QWLQQKESE >gi|307679030|gb|GL456767.1| GENE 81 81685 - 82431 699 248 aa, chain - ## HITS:1 COG:L1007 KEGG:ns NR:ns ## COG: L1007 COG0584 # Protein_GI_number: 15672046 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Lactococcus lactis # 2 247 34 281 281 221 45.0 8e-58 MTDIIAHRGSKGTHPENTCIAFREAVRVGAEGIELDVHLSKDGYLIVMHDETVDRTTDGH GEIQQLTLNELKQLDAGSWFQKNSSVQCVPTLEDVLNCLVEEQFNGFLNIELKTDIIHYE GIEKKVVQQMKQKNWPFRYLYSSFYFPSLVKLKKADPKTEIAFIYESAEDLSQAGPAFAL VDSLHPKMSWVLAHEKELIAIGKPLRPWTVNRMEEMENCFQLKLAGVHTDFPEEAKFARQ NWQEEGET >gi|307679030|gb|GL456767.1| GENE 82 82551 - 83294 615 247 aa, chain - ## HITS:1 COG:lin2695 KEGG:ns NR:ns ## COG: lin2695 COG0463 # Protein_GI_number: 16801756 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Listeria innocua # 1 227 79 305 315 325 66.0 4e-89 MSAGFDYSTHDAVITMDADLQHPPATIIDMIDLWQQGYEDVYAKRNQRKGESWFKKTSSK WFYKVLGKLANTPVLPDAGDYRLLDRKVVEALKQMRESQRYTKGLYNWVGFKKVAIEFDA DERLHGETKWSFGALLKLAIEGITSYTTAPLKISMYFGFLVSFVAFIYMIYVLIKTLIFG ADTSGFPSLMIMILFLGGCQLISVGILGEYVGRVFLETKKRPLYFVENIYSLPKKNETKE SELKEID >gi|307679030|gb|GL456767.1| GENE 83 83375 - 83530 102 51 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|255975366|ref|ZP_05425952.1| ## NR: gi|255975366|ref|ZP_05425952.1| conserved hypothetical protein [Enterococcus faecalis T2] glycosyltransferase, group 2 family protein [Enterococcus faecalis TX0860] conserved hypothetical protein [Enterococcus faecalis T2] glycosyltransferase, group 2 family protein [Enterococcus faecalis TX0860] # 1 36 1 36 321 64 88.0 3e-09 MKKKILISIPAYNEANNIRPLYKKLNETLEKKETKLILKYYLLMMEAKITL >gi|307679030|gb|GL456767.1| GENE 84 83663 - 84613 1025 316 aa, chain - ## HITS:1 COG:L12335 KEGG:ns NR:ns ## COG: L12335 COG0451 # Protein_GI_number: 15672193 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Lactococcus lactis # 5 315 8 313 313 382 63.0 1e-106 METFLITGGAGFIGSTLANYYSKDNQVVVIDDLSMGQTENLNTSENITFIEGSVIDQQLM EKVLQEYQFDYIFHLAAIASVADSVARPVETHQVNFESVLQLLELIRKYQKDLKRLVFAS SAAVYGDEPTLPKQEESVIRPLTPYAVDKFASEKYVLNYCHLYDVPTSAVRFFNVYGPNQ NPNSPYSGVISIVMDSYKRLLANQEVTFNIFGDGKQSRDFVFVEDVVQALNLVAHSDQSL GEVYNVGTGKATDLNELISSLNDIMKVTLPVEYKEARAGDIKDSLADISKLRTIGYEPKY SIQSGLDKYVNYELKE >gi|307679030|gb|GL456767.1| GENE 85 85739 - 85852 80 37 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKETNLSDNELLTAIEKTTETLFISEELSSLGNSSNQ >gi|307679030|gb|GL456767.1| GENE 86 86255 - 87661 829 468 aa, chain - ## HITS:1 COG:MA4461 KEGG:ns NR:ns ## COG: MA4461 COG2244 # Protein_GI_number: 20093247 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Methanosarcina acetivorans str.C2A # 1 389 1 399 490 92 24.0 1e-18 MGKYKKLAGNSVVFAAGNLGSKMISFILVPLYTYYLTTTEYGIVDLVTTTTSLLLPIVSG GIAVAVLRFTLDKNANKSIVVSNSAVISLIGIVLSFALYVALSFFNVLENALIYFVLLLS LQILTQILAQFARGNGQVKVFAFNGMLKTAVIGVTNILFLVNFHMGLQGYLLALVVAEIV SLIYLLITTPYFSYLKLSAVDFTYMKDMLIFSLPTIPNDVLWWFVNSSSRYFILFFLGAG ANGLYAVANKIPSLISMIQSVFSQAWQISLVEEKDSKNKHEFHGQIFKVYSFLLFTVASG ILVFLKFFTANLVAKAYYDSWQVTPLLLLSAIYSGFIGFYGQFYVAEKKTKGLMNTSIIS GILSIICNYIFISAFGLMGIGIASAISLFAGWMVRIYDTRSFVHIKIDWSRLIGNHMILL IQFILLFLVDAGLLMVIEFIMFIALMFFNKDIVSNFIEQFIKIIKRKK >gi|307679030|gb|GL456767.1| GENE 87 87727 - 89112 665 461 aa, chain - ## HITS:1 COG:no KEGG:MPTP_0822 NR:ns ## KEGG: MPTP_0822 # Name: not_defined # Def: hypothetical protein # Organism: M.plutonius # Pathway: not_defined # 13 453 12 454 462 238 34.0 5e-61 MKSNVQRFNQLSKEYYILFMLILLMFRAIGPYSLLPSIVDNLLYAAGAIFGSIIILIDLV NIVRGKKKWNYNWWLIGFLVVIFISSIVNRRYGITGNIKLLVWQSIYFLVVYEVAQDNEI FPRLIKKFTGLLTSVWFVLALVSLIMFFFQYSYTVHLQTRSRFLRIGFYEGRLFGVFEDL NFGSTVCVVVIILSFAYLVRKSYGNKWLGLLLKINIILQFLYIVLSGSRTGVLVLISVFF VYSFFKVFYYKRINKQHVLVKFLCAILLSLVGCGIIYLSVDLFKWILSYIPELFNEVKTK NPVKEKPVDLTRPDVENNDDISNGRLALWKSGIELFKSSWLVGVSPRNMLPYASDMLPQT FIAKTQKYTHNSYINLLASTGSLGVVTFVSFFVSRIIEIVAFSFSKVNNFFQQGYATYVL SVLAVAVSGMFLNDIILVNSIGSLIFWLFLGRIVYLSKEFK >gi|307679030|gb|GL456767.1| GENE 88 89127 - 90050 529 307 aa, chain - ## HITS:1 COG:lin1074 KEGG:ns NR:ns ## COG: lin1074 COG1887 # Protein_GI_number: 16800143 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Listeria innocua # 3 302 79 383 384 107 27.0 4e-23 MTSFRALYELHTAKIWIDNCRKNIYPKKRKNQFYIQTWHASFSLKMMERLVEDKLPPKYV KRAKKDSKMCDLLIFESANTISDVPYNFWYEGEMFRNGTPRGDIFINYDERLVRKVYDHY NIDYHKKIVMYAPTFRQGYDLEVDITFLERLTQTFEKRFKNSYVMLVRLHPNDTKNKERI LGGSLPQNIIDASDYEDMQELLCATDTLITDYSSSSGEALISEKKCFIYAYDYKEYSKDR GLLIDLDNLPFPVSTNQEELINQVYKFSNSDYLEKVERFKKIYNVFETGHASQDIGDRIL QEIDQVK >gi|307679030|gb|GL456767.1| GENE 89 90384 - 90785 480 133 aa, chain - ## HITS:1 COG:BS_tagD KEGG:ns NR:ns ## COG: BS_tagD COG0615 # Protein_GI_number: 16080627 # Func_class: M Cell wall/membrane/envelope biogenesis; I Lipid transport and metabolism # Function: Cytidylyltransferase # Organism: Bacillus subtilis # 1 129 1 126 129 154 65.0 3e-38 MKRVITYGTFDLLHYGHVNLLKRAKSKGDYLIVGLSTDEFNLNSKDKVCYFSYEERKSIL EGIRYVDLVIPEENWDQKVKDMKLYDIDTFVMGNDWEGKFDYLAEETGVEVAYLERTPEI STTQIKKELKDFK >gi|307679030|gb|GL456767.1| GENE 90 90814 - 92019 840 401 aa, chain - ## HITS:1 COG:lin1074 KEGG:ns NR:ns ## COG: lin1074 COG1887 # Protein_GI_number: 16800143 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Listeria innocua # 21 398 3 383 384 137 27.0 4e-32 MVLKLKDKWLYLKTRVFSRIFANSIFYLLYPILIFFPIKKNKIVVSNFNGKGYGDNAKYI CNYLLEAKAPVDIVWLIDKHWVKENGGCPNSVRTVHVRSFQALFEMFTAKIWIDNCRKSF YPPKRANQFYIQTWHAGFTLKQIEKYVETKLPSRYVKTAKKDSQMCDLLLFETSNMIPDV QDTFWYEGETFRNGLPRNDLLVNYDKLIIEKVYSYFNIDSSKKIIMYAPTFRQEYDLEMN NELLSKIIQVYSKTFNQDAVMLIRLHPNDTVNKNRIIGEGLPAGMIDASSYDDMQELLCA TDTLVTDYSSTLGEMLIMEKKCFIYAYDYEEYLKDRGLLMDFKELPFPFALTEKELLRSI KDFSASDYVKKVRDFKKEHNIYETGHASQDIGNRILLEMKK >gi|307679030|gb|GL456767.1| GENE 91 92045 - 93025 757 326 aa, chain - ## HITS:1 COG:SP1365 KEGG:ns NR:ns ## COG: SP1365 COG0463 # Protein_GI_number: 15901219 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Streptococcus pneumoniae TIGR4 # 4 311 6 314 328 227 41.0 2e-59 MSEISIIVPVYNVENYLKKCVESILSQTFTDFELLLVDDGSTDSSGEMCDELKRLDERIK VIHKENGGLSSARNAGIDVAKGKYLTFVDSDDYIDTHMLEVLYKNMVQEDADLSIVGVTS VYSGQEPEITPSEKYVVTQKEATKMILIGKQASVYAVAKLYKRNIFDDLRYPVGKAHEDV YVIMDVLNQCKKVVVDTASYYFYVHREGSITASKFNIRDLESIDSWEQAWHTIQEIMPEY SDLAFKRVCAANFYVLDKMMKSDSESEYPEMTKRIVGFLKENQKFIYANPYFTKNRKLSL TFLRIHPMLYKVFPKMQQRYLRKVNK >gi|307679030|gb|GL456767.1| GENE 92 93036 - 94013 592 325 aa, chain - ## HITS:1 COG:SP1365 KEGG:ns NR:ns ## COG: SP1365 COG0463 # Protein_GI_number: 15901219 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Streptococcus pneumoniae TIGR4 # 4 325 2 323 328 129 26.0 6e-30 MEKENLKLSVIIPVYNVMTTLTRAVTSVLNQDLSVPYEIILVNDGSSDDSGKLAEKLVEE HKNIKVYHKKNGGLASARNYGLKYAEGTLIAFLDSDDYFLPSILDKAVQAFDSPEIDVVV FGLIKGNETKEISLIPKEQIITDKEAIIRSLFVDKGIDFYAWNKIYRNHLFDEVRFPEGK LYEDIVPTYEVMKRAKAVNYLAMPGIYYYQNHSSIVHQKFNEKQYDNVTQREILLNKIVE EYPALSSLALDKVLDGYLSTGFKITSKPRGEINKKYLDFSRKRIRKNLVGLMKNTKTSSA KKMGLLLYLVNGPLYNFMYRKILGK >gi|307679030|gb|GL456767.1| GENE 93 94663 - 94755 68 30 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEKILVSAIMPVYNSNIYLECDRKYRKANL >gi|307679030|gb|GL456767.1| GENE 94 95454 - 95801 335 115 aa, chain - ## HITS:1 COG:no KEGG:EF2174 NR:ns ## KEGG: EF2174 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 2 111 706 815 893 111 51.0 9e-24 AVKKNTLVEAQGIEYSSNGYPRLVTRKGYLTARKDIVSAAISNIDNYYTENPVKIVMLVN DRYYTDLEFKTPGSPVKKGTTIRVQGIEYSKNGYPRLKTSQGYITSNKRYVQKVN Prediction of potential genes in microbial genomes Time: Tue Jul 5 18:31:41 2011 Seq name: gi|307679029|gb|GL456768.1| Enterococcus faecalis TX0312 genomic scaffold Scfld29, whole genome shotgun sequence Length of sequence - 77983 bp Number of predicted genes - 76, with homology - 74 Number of transcription units - 32, operones - 17 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 27 - 70 6.1 1 1 Tu 1 . - CDS 71 - 520 777 ## COG1970 Large-conductance mechanosensitive channel - Prom 749 - 808 7.7 + Prom 571 - 630 5.5 2 2 Op 1 14/0.000 + CDS 729 - 1997 1440 ## COG0612 Predicted Zn-dependent peptidases 3 2 Op 2 3/0.000 + CDS 1990 - 3294 1535 ## COG0612 Predicted Zn-dependent peptidases + Prom 3320 - 3379 5.1 4 2 Op 3 . + CDS 3462 - 4328 774 ## COG1426 Uncharacterized protein conserved in bacteria + Term 4336 - 4402 18.9 + Prom 4537 - 4596 10.6 5 3 Op 1 . + CDS 4633 - 4887 306 ## gi|255970657|ref|ZP_05421243.1| predicted protein 6 3 Op 2 . + CDS 4897 - 5259 279 ## gi|256762506|ref|ZP_05503086.1| predicted protein 7 3 Op 3 . + CDS 5250 - 6650 1237 ## lin0398 hypothetical protein 8 3 Op 4 . + CDS 6673 - 6972 320 ## BpOF4_06385 hypothetical protein 9 3 Op 5 . + CDS 6982 - 7275 230 ## gi|255970661|ref|ZP_05421247.1| predicted protein 10 4 Op 1 . + CDS 7420 - 7872 354 ## gi|255970662|ref|ZP_05421248.1| predicted protein + Prom 7890 - 7949 5.2 11 4 Op 2 . + CDS 7971 - 8549 331 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase + Term 8584 - 8634 3.1 + Prom 9014 - 9073 6.2 12 5 Tu 1 . + CDS 9095 - 9811 508 ## EF3146 hypothetical protein + Prom 10164 - 10223 5.0 13 6 Tu 1 . + CDS 10379 - 10804 88 ## EF3145 hypothetical protein - Term 10831 - 10882 1.1 14 7 Tu 1 . - CDS 10938 - 11825 686 ## COG1737 Transcriptional regulators + Prom 12133 - 12192 13.8 15 8 Op 1 . + CDS 12238 - 13137 1115 ## COG1023 Predicted 6-phosphogluconate dehydrogenase 16 8 Op 2 . + CDS 13150 - 14151 926 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases 17 8 Op 3 . + CDS 14166 - 15272 1028 ## COG0371 Glycerol dehydrogenase and related enzymes 18 8 Op 4 13/0.000 + CDS 15285 - 16121 1021 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 19 8 Op 5 1/0.375 + CDS 16142 - 17014 1199 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 20 8 Op 6 9/0.000 + CDS 17036 - 17542 668 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 21 8 Op 7 . + CDS 17620 - 18072 704 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 22 8 Op 8 . + CDS 18096 - 19169 1198 ## COG1312 D-mannonate dehydratase 23 8 Op 9 . + CDS 19174 - 19827 748 ## COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase + Term 19873 - 19926 7.5 + Prom 20041 - 20100 5.5 24 9 Tu 1 . + CDS 20141 - 20611 585 ## COG4405 Uncharacterized protein conserved in bacteria + Term 20615 - 20672 -0.1 + Prom 20613 - 20672 5.0 25 10 Op 1 . + CDS 20787 - 21005 413 ## COG4443 Uncharacterized protein conserved in bacteria 26 10 Op 2 . + CDS 21022 - 21906 1089 ## COG1561 Uncharacterized stress-induced protein 27 10 Op 3 . + CDS 21962 - 22267 455 ## EF3130 hypothetical protein + Term 22272 - 22312 7.4 - Term 22259 - 22300 10.1 28 11 Tu 1 . - CDS 22312 - 23793 1675 ## COG1686 D-alanyl-D-alanine carboxypeptidase - Prom 23871 - 23930 5.0 + Prom 23923 - 23982 4.4 29 12 Op 1 25/0.000 + CDS 24017 - 24631 818 ## COG0194 Guanylate kinase 30 12 Op 2 3/0.000 + CDS 24636 - 24938 538 ## COG1758 DNA-directed RNA polymerase, subunit K/omega + Term 24960 - 25007 8.3 + Prom 25004 - 25063 5.2 31 13 Op 1 4/0.000 + CDS 25093 - 27525 2850 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase 32 13 Op 2 26/0.000 + CDS 27552 - 28046 656 ## COG0242 N-formylmethionyl-tRNA deformylase 33 13 Op 3 20/0.000 + CDS 28039 - 28980 1206 ## COG0223 Methionyl-tRNA formyltransferase 34 13 Op 4 3/0.000 + CDS 28986 - 30365 1492 ## COG0144 tRNA and rRNA cytosine-C5-methylases 35 13 Op 5 17/0.000 + CDS 30367 - 31116 839 ## COG0631 Serine/threonine protein phosphatase 36 13 Op 6 7/0.000 + CDS 31113 - 33269 2293 ## COG0515 Serine/threonine protein kinase + Term 33308 - 33347 -0.4 + Prom 33276 - 33335 4.1 37 13 Op 7 10/0.000 + CDS 33518 - 34411 879 ## COG1162 Predicted GTPases 38 13 Op 8 6/0.000 + CDS 34435 - 35088 1005 ## COG0036 Pentose-5-phosphate-3-epimerase 39 13 Op 9 . + CDS 35085 - 35729 579 ## COG1564 Thiamine pyrophosphokinase + Term 35733 - 35784 17.1 - Term 35749 - 35799 6.0 40 14 Tu 1 . - CDS 35832 - 36020 318 ## PROTEIN SUPPORTED gi|29377572|ref|NP_816726.1| 50S ribosomal protein L28 - Prom 36252 - 36311 9.1 + Prom 36117 - 36176 3.4 41 15 Op 1 9/0.000 + CDS 36305 - 37195 246 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 42 15 Op 2 . + CDS 37197 - 38429 1141 ## COG1668 ABC-type Na+ efflux pump, permease component + Term 38495 - 38542 9.4 + Prom 38872 - 38931 3.9 43 16 Op 1 9/0.000 + CDS 39156 - 39986 171 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 44 16 Op 2 . + CDS 39988 - 40707 473 ## COG3279 Response regulator of the LytR/AlgR family + Term 40716 - 40761 3.2 + Prom 40773 - 40832 10.1 45 17 Op 1 9/0.000 + CDS 40919 - 41281 627 ## COG1302 Uncharacterized protein conserved in bacteria 46 17 Op 2 4/0.000 + CDS 41364 - 43040 2479 ## COG1461 Predicted kinase related to dihydroxyacetone kinase 47 17 Op 3 . + CDS 43292 - 45328 2119 ## COG1200 RecG-like helicase + Prom 45344 - 45403 6.4 48 18 Op 1 3/0.000 + CDS 45431 - 46432 1341 ## COG0416 Fatty acid/phospholipid biosynthesis enzyme + Prom 46455 - 46514 4.0 49 18 Op 2 . + CDS 46569 - 46808 413 ## COG0236 Acyl carrier protein + Term 46825 - 46863 5.0 + Prom 46997 - 47056 8.5 50 19 Op 1 44/0.000 + CDS 47105 - 48112 601 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 51 19 Op 2 6/0.000 + CDS 48112 - 49056 1119 ## COG4608 ABC-type oligopeptide transport system, ATPase component 52 19 Op 3 49/0.000 + CDS 49056 - 50018 1175 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 53 19 Op 4 5/0.000 + CDS 50046 - 50969 1142 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 54 19 Op 5 . + CDS 50998 - 52776 2361 ## COG0747 ABC-type dipeptide transport system, periplasmic component + Term 52883 - 52936 11.6 + Prom 53016 - 53075 7.3 55 20 Op 1 6/0.000 + CDS 53106 - 53798 972 ## COG0571 dsRNA-specific ribonuclease 56 20 Op 2 1/0.375 + CDS 53819 - 57397 4581 ## COG1196 Chromosome segregation ATPases 57 20 Op 3 2/0.250 + CDS 57422 - 58249 1181 ## COG0561 Predicted hydrolases of the HAD superfamily 58 20 Op 4 . + CDS 58252 - 59580 999 ## PROTEIN SUPPORTED gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 + Term 59610 - 59674 9.2 + Prom 59643 - 59702 1.8 59 21 Tu 1 . + CDS 59739 - 60224 727 ## COG3542 Uncharacterized conserved protein 60 22 Tu 1 . + CDS 60344 - 60742 472 ## COG3607 Predicted lactoylglutathione lyase + Term 60746 - 60789 7.2 - Term 60734 - 60777 7.2 61 23 Tu 1 . - CDS 60793 - 61689 1197 ## COG1284 Uncharacterized conserved protein - Prom 61715 - 61774 7.0 62 24 Tu 1 . - CDS 62236 - 62736 443 ## COG1335 Amidases related to nicotinamidase - Prom 62765 - 62824 5.7 + Prom 62709 - 62768 4.4 63 25 Tu 1 . + CDS 62907 - 65177 2607 ## COG2918 Gamma-glutamylcysteine synthetase + Term 65186 - 65234 11.0 + Prom 65214 - 65273 6.2 64 26 Tu 1 . + CDS 65366 - 65467 66 ## + Term 65555 - 65603 7.6 + Prom 65570 - 65629 6.7 65 27 Tu 1 . + CDS 65799 - 65900 66 ## + Term 65985 - 66036 9.3 - Term 65981 - 66018 5.6 66 28 Tu 1 . - CDS 66085 - 66537 613 ## COG5506 Uncharacterized conserved protein - Prom 66563 - 66622 4.5 + Prom 66619 - 66678 3.4 67 29 Op 1 11/0.000 + CDS 66722 - 67669 921 ## COG4606 ABC-type enterochelin transport system, permease component 68 29 Op 2 10/0.000 + CDS 67666 - 68631 850 ## COG4605 ABC-type enterochelin transport system, permease component 69 29 Op 3 5/0.000 + CDS 68628 - 69383 274 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 70 29 Op 4 . + CDS 69422 - 70375 1246 ## COG4607 ABC-type enterochelin transport system, periplasmic component + Term 70386 - 70423 3.2 + Prom 70722 - 70781 6.0 71 30 Op 1 . + CDS 70819 - 72462 1816 ## COG4166 ABC-type oligopeptide transport system, periplasmic component 72 30 Op 2 . + CDS 72484 - 73704 1363 ## COG2195 Di- and tripeptidases + Term 73706 - 73758 18.0 + Prom 73711 - 73770 3.4 73 31 Op 1 . + CDS 73790 - 74347 281 ## PROTEIN SUPPORTED gi|116511539|ref|YP_808755.1| SSU ribosomal protein S5P alanine acetyltransferase 74 31 Op 2 . + CDS 74382 - 74993 799 ## COG4493 Uncharacterized protein conserved in bacteria + Term 75056 - 75121 18.4 + Prom 75234 - 75293 4.6 75 32 Op 1 . + CDS 75359 - 75721 371 ## EF3076 cell wall surface anchor family protein 76 32 Op 2 . + CDS 75708 - 77982 1723 ## EF3075 hypothetical protein Predicted protein(s) >gi|307679029|gb|GL456768.1| GENE 1 71 - 520 777 149 aa, chain - ## HITS:1 COG:mlr5692 KEGG:ns NR:ns ## COG: mlr5692 COG1970 # Protein_GI_number: 13474738 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Large-conductance mechanosensitive channel # Organism: Mesorhizobium loti # 1 133 18 157 157 93 43.0 1e-19 MIKEFKEFIMRGSVLDLAVGVVIGSAFTAIVTQVVEGLITPLISLIFVLTTGKKSADDAL GALVYKVEGVEFNIGSVISALITFLITAFVLFLIVKAANKMKNRGKKEEAAEEEVVPTSE DYLKEIRDLLAAQTPPAETVKTDSTFTEK >gi|307679029|gb|GL456768.1| GENE 2 729 - 1997 1440 422 aa, chain + ## HITS:1 COG:L32666 KEGG:ns NR:ns ## COG: L32666 COG0612 # Protein_GI_number: 15673955 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Lactococcus lactis # 11 421 2 408 418 311 44.0 2e-84 MSVQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHETITKRTLLSSLMETNSLNYPNQVKL SERLAELYGASFGIGVSKKGNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQ AGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVYFNQSEDQKIPSFGTVAALAEE TAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLFKQLPFTPREEGKAAIFYNQPIRNVI EERTEREVLAQSKLNLAYNTDIYYGDSYYFALQVFNGIFGGFPHSKLFMNVREKEHLAYY ASSSIDTFRGFMTVQTGIDGKNRNQVLRLISTELENIRLGKISELEIEQTKAMLKNQYIL ALDNAGAWLEKEYLNELMPQTMLTAEEWIARINAVTISEIQEVAKRLELQAIFFLEGETE ND >gi|307679029|gb|GL456768.1| GENE 3 1990 - 3294 1535 434 aa, chain + ## HITS:1 COG:lin1430 KEGG:ns NR:ns ## COG: lin1430 COG0612 # Protein_GI_number: 16800498 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Listeria innocua # 1 429 1 427 428 453 55.0 1e-127 MIKKDYAQIKETLYTETLANGLKVYLLPKNDFQKTYGLFTTDYGSIDNTFVPIGQEEMIE VPDGIAHFLEHKMFEKEDGDVFQKFGQQGASANAFTSFTKTSYLFSTTDQVTQNLETLLD FVQSPYFTKETVEKEKGIIGQEIQMYLDDPNWRLFFGILGNLYPKHPLHIDIAGTVASIA EITAEDLYTCYNTFYHPSNMTLFVVGKMDPEALMAFIRENQAAKEFPAAQPIRRHFPEET AADIVKESAIEMAVTRAKVLVGLKGLDEVPTTGRDLMKYQVTVNLLLQLLFGNTSQNYLA LYDEGLLDDSFSYDFNLDRSFHFADIGGDSEQPEVLAERIEAILLSATTSPELTEENLSL LKKKMIGKYFQSLNSLEYIANQFSQSLFGETTLFDKIEVIESIQLADVRQVAETLIREEG LSRFYMYPKGETEQ >gi|307679029|gb|GL456768.1| GENE 4 3462 - 4328 774 288 aa, chain + ## HITS:1 COG:lin1432 KEGG:ns NR:ns ## COG: lin1432 COG1426 # Protein_GI_number: 16800500 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 6 285 4 299 311 98 28.0 1e-20 MASVNIGETLKEARLQKNISIDELQQMTKIQKRYLEIIEQNDFESLPGTFYVRAFIRQYA SAVGLDGNQLVDIYDGKEPAIVEEPKPVYEELEGSRKQLHDEEKQSSWLLRNLPAIAFSL IGLAIAVVVLYIMWQDQKAEPIIQTPATSTSVEKPKESSQAPESSTQSSTPPSSSSEPEK KTAVAVVSDANNQVTATVKDANSPINITFKGTEGSCWIGVMVDGNYTYQHTLQAGETETT ALPANAANATLILGASNNVAIQVDGADLTLEKTPVLIRKDVTLGITYR >gi|307679029|gb|GL456768.1| GENE 5 4633 - 4887 306 84 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|255970657|ref|ZP_05421243.1| ## NR: gi|255970657|ref|ZP_05421243.1| predicted protein [Enterococcus faecalis T1] hypothetical protein HMPREF9504_02353 [Enterococcus faecalis TX0102] predicted protein [Enterococcus faecalis T1] hypothetical protein HMPREF9504_02353 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9502_01783 [Enterococcus faecalis TX0031] hypothetical protein HMPREF9508_00794 [Enterococcus faecalis TX0312] hypothetical protein EF62_0221 [Enterococcus faecalis 62] # 1 84 1 84 84 109 100.0 7e-23 MVKIASNQGAAQKAIAGIKSVSVNKNQICHLGESNISSMKKGVKVSNQLLNQLAKVVNGV NAQANKFPKLAATIAARDSQTTFK >gi|307679029|gb|GL456768.1| GENE 6 4897 - 5259 279 120 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256762506|ref|ZP_05503086.1| ## NR: gi|256762506|ref|ZP_05503086.1| predicted protein [Enterococcus faecalis T3] predicted protein [Enterococcus faecalis T3] # 1 120 1 120 120 135 98.0 1e-30 MEKDTNEKLRRNYAEQIVEKERAMDQLSKEKKQIQTIFGTLESELTRNFRELEQLNAEVI HKGGKSTRWEQEELSGKQRYLRGFLQQQTHELSQRYTKATAQSNEERLQLQRERSRLSWD >gi|307679029|gb|GL456768.1| GENE 7 5250 - 6650 1237 466 aa, chain + ## HITS:1 COG:no KEGG:lin0398 NR:ns ## KEGG: lin0398 # Name: not_defined # Def: hypothetical protein # Organism: L.innocua # Pathway: not_defined # 1 246 1 246 536 213 43.0 2e-53 MGLIYSSSDSSAMMRALSSNLAVARTTTSELTAGCQQLIAAIDGHTLSGAAYNAGKGLFS ELVIPTIHRMTAAVDNVQSDLAKYSAADAFIASEGFLDEDKLKLKIKIMKANQQLLHDSA RAVATLAHSQPIPGIYELLQNAQRTFIKMAESMQQDIDKLHKQIQKLNEFDRQTKNLFAT SLEEMQLAMQGILVLNETTVKSNGLYTLPSGVDKSYFTEIKKEASTVLETAKPKIELIKK TDSLEEISRKTIACANIGINPYTGKKISQKEADKFKYAAWAGTLTEVGNVVLGSYYGNKT ASRLKNSGQGKKSIKPKYDDIYTYQYNGYDNPGPLNDIKGQPNRNFYGGRYDMEVLKEPK ILYRAGDGKNPLGQWFTESPPNSVANVRIDTAVKPQWIDRNGSFTGASNIDRVYKIEIPA GTTIYSGPVGNQGGIYQGGMNTNQIFIKRPWEFGDKITILGSSPLK >gi|307679029|gb|GL456768.1| GENE 8 6673 - 6972 320 99 aa, chain + ## HITS:1 COG:no KEGG:BpOF4_06385 NR:ns ## KEGG: BpOF4_06385 # Name: not_defined # Def: hypothetical protein # Organism: B.pseudofirmus # Pathway: not_defined # 3 99 4 100 103 95 53.0 8e-19 MMNCNEIEEVIKELLPLLKKYNTGDMSYYIDQLSTALDILNSNISITEKNQELYKIGKKL FPARGGLTDFNVWVEDGEERISINKPIDDLTDKLWNLIK >gi|307679029|gb|GL456768.1| GENE 9 6982 - 7275 230 97 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|255970661|ref|ZP_05421247.1| ## NR: gi|255970661|ref|ZP_05421247.1| predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] hypothetical protein HMPREF9498_02636 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9521_02247 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9505_02295 [Enterococcus faecalis TX0109] hypothetical protein HMPREF9504_02349 [Enterococcus faecalis TX0102] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] hypothetical protein HMPREF9505_02295 [Enterococcus faecalis TX0109] hypothetical protein HMPREF9521_02247 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9498_02636 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9504_02349 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9501_02434 [Enterococcus faecalis TX0027] hypothetical protein HMPREF9497_02552 [Enterococcus faecalis TX4244] hypothetical protein HMPREF9502_01778 [Enterococcus faecalis TX0031] hypothetical protein HMPREF9508_00798 [Enterococcus faecalis TX0312] hypothetical protein HMPREF9516_01963 [Enterococcus faecalis TX1302] hypothetical protein EF62_0217 [Enterococcus faecalis 62] hypothetical protein OG1RF_12412 [Enterococcus faecalis OG1RF] # 1 97 1 97 97 170 100.0 3e-41 MKDIKILKTQYQILLDNLIHYGDKSNIPQIQTIKYILNLLDSNPDMTQIKTMNESLYPPR GGLGEFYVWDDDYDKRIDLNEPIDKAKSITWEILMKD >gi|307679029|gb|GL456768.1| GENE 10 7420 - 7872 354 150 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|255970662|ref|ZP_05421248.1| ## NR: gi|255970662|ref|ZP_05421248.1| predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] hypothetical protein CUI_2058 [Enterococcus faecalis PC1.1] hypothetical protein HMPREF9498_02637 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9521_02248 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9505_02294 [Enterococcus faecalis TX0109] hypothetical protein HMPREF9504_02348 [Enterococcus faecalis TX0102] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] hypothetical protein CUI_2058 [Enterococcus faecalis PC1.1] hypothetical protein HMPREF9505_02294 [Enterococcus faecalis TX0109] hypothetical protein HMPREF9521_02248 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9498_02637 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9504_02348 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9501_02433 [Enterococcus faecalis TX0027] hypothetical protein HMPREF9502_01777 [Enterococcus faecalis TX0031] hypothetical protein HMPREF9508_00799 [Enterococcus faecalis TX0312] hypothetical protein HMPREF9516_01962 [Enterococcus faecalis TX1302] conserved hypothetical protein [Enterococcus faecalis 62] hypothetical protein OG1RF_12411 [Enterococcus faecalis OG1RF] # 1 150 5 154 154 265 100.0 6e-70 MQGILVLNETTVKSNGLYTLPSGVDKSYFTEIKKDTKNEIIDKQLLEGCTIIRVHDKSRG FEHYMLEKDDNNNSREKGLSMLKIVNKKFNLITIFSIALLVMGFLIVGLQLYFYFIYGSK FLDSITLIGMINLGLGYYQLFLKKGKNISE >gi|307679029|gb|GL456768.1| GENE 11 7971 - 8549 331 192 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 5 187 484 668 904 132 40 7e-30 MNLPNKLTVLRIFMIPIFIIIVSVPMDWGTISFGDTTLAVTQLVGAIIFAVASFTDWLDG KIARAQGLVTNFGKFADPLADKMLVMTAFIVLVGQGKVPAWIVAIIVCRELAVTGLRLLL VEHGEVMAAAWPGKVKTATQMVAIILLFINNIPFSALHLPLDQIMLYACLIFTIYSGVDY FAKNKDVFKGSM >gi|307679029|gb|GL456768.1| GENE 12 9095 - 9811 508 238 aa, chain + ## HITS:1 COG:no KEGG:EF3146 NR:ns ## KEGG: EF3146 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 229 1 229 238 424 99.0 1e-117 MGEAKVTKTFRLTELVASDLSCKDLFDELIAVLEILDVEVVNKKIVYFYKRNVKSKQEKL EVCFTRESILHLIGISYYDINERETSKSRTKSKYAIEFYRDFKRNKLNFSKCWVESTRKV KDKLQVLKYIKSIKTDVVRIGADGQLRTIPMTNTISTPKIGLGIGLYHDHPEFSIPRSCL NLAQDKEAKQHTSFRNACRCTKIWIYERTEQGTWKLEDRQEFFKKIQAEKSKKKRRKK >gi|307679029|gb|GL456768.1| GENE 13 10379 - 10804 88 141 aa, chain + ## HITS:1 COG:no KEGG:EF3145 NR:ns ## KEGG: EF3145 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 141 10 150 150 191 100.0 1e-47 MNYEHFFTYKDIIISLLIFFGLLYVIRLESVTKYFSLVIVAIVWFNPILVQLFDKHTITV SIVVTQMVMHFLFIPLFLLTLLIISITEKEDRLFCLPIIFSVFLVCSQATWLYEYNLLFR VVDIWMILMILFVRIKNINPE >gi|307679029|gb|GL456768.1| GENE 14 10938 - 11825 686 295 aa, chain - ## HITS:1 COG:L54944 KEGG:ns NR:ns ## COG: L54944 COG1737 # Protein_GI_number: 15674168 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 6 288 5 280 282 151 33.0 2e-36 MKNHYLDQRIRIKKPNLSLTEKKISDYFVHSESLLTQMTLESLANEIGVSQSSVYQFVKK IGYSGFQEFKIDIARNSNYQPTFQNVNSVNGADDISPDDDSITIAKKVLQANIYSLSNAT QFLTKELLDNVLALMYSAKTLHFFGQGGSSIVAFDSFHKFIRTNYRCNYIFDYHMQLSFV TKLTSEDCVFIFSHSGKTKESINLARQVKKTNAKMITLTGNSGSELAGLSDEAIIVVTEE GLFRAESLASRISYLTVMDILYTNTMYHNFDQNADSLKKIRDNISTTKTDPHYLS >gi|307679029|gb|GL456768.1| GENE 15 12238 - 13137 1115 299 aa, chain + ## HITS:1 COG:BH2674 KEGG:ns NR:ns ## COG: BH2674 COG1023 # Protein_GI_number: 15615237 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted 6-phosphogluconate dehydrogenase # Organism: Bacillus halodurans # 1 298 1 298 298 282 47.0 6e-76 MDIGFIGLGKMGLNMALNVHEQGWPIIGFDVTKEARATAREQGLSVVDSLSELLKALKKR KVIFLSTPAGQITNQLVAELVEQLAPEDIIVDSGNSNFHDSVANAQFAKEKGIYFIDCGT SGGIKGAREGACLMVGGAPEAVKVLTPFFEDLACEQGYLYAGKSGAGHYLKMVHNGIEYV MMQAMGEGFNLLEAAEYDFALEKVADVWNHGSIIEARLMGLAKEVFAENPTLANLEGKVA ANGEAKWMIEEALRLEMPVPTTALSLFTRNESMLANHFSNKVVASLRQGFGGHEVVKSQ >gi|307679029|gb|GL456768.1| GENE 16 13150 - 14151 926 333 aa, chain + ## HITS:1 COG:AF0813 KEGG:ns NR:ns ## COG: AF0813 COG0111 # Protein_GI_number: 11498419 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Archaeoglobus fulgidus # 37 325 26 311 527 171 35.0 2e-42 MLKKQKIAIVNSSSFGQIFPEHLTRLEKIGTVKHFTVDSEIGGKELAERLQGYTIIIASV TPFFTKEFFEHKDELLLISRHGIGYNNIDLDAAKQHDTIVSIIPALVERDAVAENNVTNL LAVLRQTVAADASVKADQWEKRANFVGRTLFNKTVGVIGVGNTGSCVVETLRNGFRCDVL AYDPYKSATYLQSYGAKKVDLDTLLASADIICLCANLTEESYHMIGSAEIAKMKDGVYLS NSARGALIDEEAMIVGLQSGKIAGLGTDVLEEEPGRKNHPYLAFENVVMTPHTSAYTMEC LQAMGEKCVQDVEDVVQGILPQRAVQEVSRYVS >gi|307679029|gb|GL456768.1| GENE 17 14166 - 15272 1028 368 aa, chain + ## HITS:1 COG:lin1848 KEGG:ns NR:ns ## COG: lin1848 COG0371 # Protein_GI_number: 16800915 # Func_class: C Energy production and conversion # Function: Glycerol dehydrogenase and related enzymes # Organism: Listeria innocua # 4 361 5 358 368 250 37.0 2e-66 MLTDLKVKVGPQFYRYHEGALASVPSLFKEYHAQRILVVHGTVSFEKAQPFLPFLADSEY QFFYHTYTGECSYFGAEQISQQIKEHQIDFLLGVGGGKLADLVGYSAHLNNLNFGLVPTL ASNCAPWTPLAVMYQENGAAEGKTEHFFRQAAFLITDPKLLLDAPRDYFVAGLADTLAKW YESETILRQAHLQGEPFLQLAGATAKLSQEAIMRDSKSALAAMDEGKLTPEFVHLSEIVF AVSGLVGGFGDKYARNAAAHAMHDAMSKFLPKSHDYLHGEKVAYGIFYQLALEKRWAIID ALIPFYQELNLPMSLRQMGLYPEEEAVLDAMVQFIDSKEKVHLIPIEISEERLRQGIEEL EKYIQNQG >gi|307679029|gb|GL456768.1| GENE 18 15285 - 16121 1021 278 aa, chain + ## HITS:1 COG:STM3770 KEGG:ns NR:ns ## COG: STM3770 COG3715 # Protein_GI_number: 16767054 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Salmonella typhimurium LT2 # 34 256 30 249 249 119 33.0 5e-27 METLSVLQSLIMALWVAAIMSRWLGGGATLTLRFSPLMTGLVAGLVMGDVPKAMIVTAAL QMIYMGVFSPGGSMPAEPSIAAAIAVPVALLGNLKPEAAIAVAVPVGLLGSYLYQFRFFI NTFLGKYTDRAVAELNSKKIARSIIWYPTIASFILFVPLVFFALYLGAPVIADIIKALEG TVVIHVLEVVGGGLAAIGIATTVYVIGRKDFLVFFFLAYFMSIVFKSLEITMVTYAIFGV IIALIFVQVQKGKPVAESAGSASATTDFDDDDDYDDGF >gi|307679029|gb|GL456768.1| GENE 19 16142 - 17014 1199 290 aa, chain + ## HITS:1 COG:STM3769 KEGG:ns NR:ns ## COG: STM3769 COG3716 # Protein_GI_number: 16767053 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Salmonella typhimurium LT2 # 20 290 21 286 286 168 36.0 1e-41 MTETTEKVVPKTTNLAPEEITNKDVTKAYLRWHFANEIPHSFERYLAPSLLYAMMPLLKK LYKDDEQLKAAYMRQLLFFNTQLSWGGGVITGLMASMEQERAKEEHEGREIMMQDDLMYN TKAGLMGALAGIGDAIDSGTVQYIFIAIAVPWAQQGSALGAIFPFVAFALYQVLLGVFFA RQSFKMGRNATGLMQSAGIQKAIEMLSVLGLFMMGILAGNYVKVSSTLQFKLSGREFVVQ DILDQIVPGLLPLAVVMGVYWFYTKKGLKVTQALLWLTGILIVLATVGIL >gi|307679029|gb|GL456768.1| GENE 20 17036 - 17542 668 168 aa, chain + ## HITS:1 COG:ECs5001 KEGG:ns NR:ns ## COG: ECs5001 COG3444 # Protein_GI_number: 15834255 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Escherichia coli O157:H7 # 4 151 3 147 164 67 30.0 1e-11 MGVVNLARVDERLIHGQVMVTLSQKSGVNSIFVVDEVVAKDKFMRDLYKSAGSRTGQKTI VITPEKAKFYWDEYQFKEYNCILIAKTVSVIYDLVKHGVPMKELNIGGIAQKNPEKDLLV TKSVYLNKEDAEKLKELHEVYGVEDIYFQATPSAPKTSLKEVLGKFNL >gi|307679029|gb|GL456768.1| GENE 21 17620 - 18072 704 150 aa, chain + ## HITS:1 COG:CAP0066_1 KEGG:ns NR:ns ## COG: CAP0066_1 COG2893 # Protein_GI_number: 15004770 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Clostridium acetobutylicum # 1 131 1 127 157 71 34.0 6e-13 MLGIVIATHGALSDGAKDAATVIMGATENIETVNLNSGDDVQALGGQIKTAIENVQQGDG VLVMVDLLSASPYNQAVLVINELEPALQKKIFVVSGTNLPMVLEAINHQLLGTPIAEAAQ AIVAQGKESVQAWDISMTSFEDEEDEDDDF >gi|307679029|gb|GL456768.1| GENE 22 18096 - 19169 1198 357 aa, chain + ## HITS:1 COG:TM0069 KEGG:ns NR:ns ## COG: TM0069 COG1312 # Protein_GI_number: 15642844 # Func_class: G Carbohydrate transport and metabolism # Function: D-mannonate dehydratase # Organism: Thermotoga maritima # 1 356 1 358 360 419 54.0 1e-117 MKWGFRWYGAAGDAIPLKHIRQIPGITGVVGTLLNKLPGDVWTVAEIQALKQSVEQEGLA LLGIESVAIHDAIKAGTDQRDHYIDNYRQTLRNLGKCGISLVCYSFKPIFGWAKTDLAYE NEDGSLSLLFDQAVVENMEAEDMYQLIHSQSKGFRLPGWEEERLQQFQELKAMYAGVTEE DLVENLRYFLERVIPVCEEENIKMGIHPDDPPWEIFGLPRITKNLADLKRILSLVDSPAN GITFCTGSLGADPTNDLPTMIREIGHRINFVHFRNVKYLGEHRFEETAHPSVAGSLDMAE LMQALVDVGYEGVIRPDHGRAIWDEKAMPGYGLYDRAMGLTYIQGLYEATKAKQNRK >gi|307679029|gb|GL456768.1| GENE 23 19174 - 19827 748 217 aa, chain + ## HITS:1 COG:VC0285 KEGG:ns NR:ns ## COG: VC0285 COG0800 # Protein_GI_number: 15640313 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-6-phosphogluconate aldolase # Organism: Vibrio cholerae # 12 197 5 190 201 136 39.0 2e-32 METKVEKNQLYQQLATCKLLPLYTATDLRYLPQVESVLVENELPFIEVTFRSQLALPAIK QLAASGNLIVGAGTVRTLKEAQEAVANGAQFIVSPAIVPEVIDFCLANEVPIFPGTATPG EIQRALAYGLRVVKFFPADIYGGLKAIKSLSGPFYDVQFLPTGGIDETNFIEYVEAKEVL AVGGSFILSEKMLQEDEASARQHVQSLLTKIKERQAK >gi|307679029|gb|GL456768.1| GENE 24 20141 - 20611 585 156 aa, chain + ## HITS:1 COG:lin2984 KEGG:ns NR:ns ## COG: lin2984 COG4405 # Protein_GI_number: 16802042 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 4 149 7 151 153 103 38.0 1e-22 MLKNVEVFWQNFLDKHELDMLMPDVWMFGDGSSEMGNRLGQLVVSGRKTATCSSLDIYKM EEEQLPKAGQYDIILDGQSQPLAIIRTTKVEIMPMNKVSESFAQAEGEGDLTLDYWYEEH ARFFKEELAPYQLQFYPDMLLVCQSFEVVDLYTEKE >gi|307679029|gb|GL456768.1| GENE 25 20787 - 21005 413 72 aa, chain + ## HITS:1 COG:L114363 KEGG:ns NR:ns ## COG: L114363 COG4443 # Protein_GI_number: 15672295 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 1 69 1 69 72 84 62.0 6e-17 MKEEFSYEILEEVAVLSENARGWRKELNLISWNGRPPKFDLREWAPDHEKMGKGITLTNE EFAELSKTIKSM >gi|307679029|gb|GL456768.1| GENE 26 21022 - 21906 1089 294 aa, chain + ## HITS:1 COG:lin1942 KEGG:ns NR:ns ## COG: lin1942 COG1561 # Protein_GI_number: 16801008 # Func_class: S Function unknown # Function: Uncharacterized stress-induced protein # Organism: Listeria innocua # 1 294 2 291 291 180 37.0 4e-45 MKSMTGFGKKTIQNENYQLDVEVKSVNQRFLDIQLRMPKELNAYELVIRQVIKRTLKRGR VEVYVNLQKIGNNQKEVRVQWDLIDQLLTSVDQHLKENYPEATFDAGDTVNHLLKQNDFV EIVEAEIVDQTFEPFLVQAFEAAIASLDQSRVQEGTQIKQVLLDYVAVLTQSIQELQAFV GVFEQEYRQRFEAKLNEWLGSQVDETRLLTEMATLLEKGDIHEELDRLDIHIDKLHQLLD ETEPVGRELDFLIQEMNREVNTIGSKSSPIEIKNSVVQMKTTLEKIREQIQNVE >gi|307679029|gb|GL456768.1| GENE 27 21962 - 22267 455 101 aa, chain + ## HITS:1 COG:no KEGG:EF3130 NR:ns ## KEGG: EF3130 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 101 1 101 101 180 99.0 2e-44 MTEVKAMTKFYDVTFQELSGRSVVKTEVASDREPFDVWQDACASYSETELNIQINDDTFV TLNRHFVVRIDVKEVDGPVDKQVRRRDELMNVVNTLSNMGL >gi|307679029|gb|GL456768.1| GENE 28 22312 - 23793 1675 493 aa, chain - ## HITS:1 COG:SA0598 KEGG:ns NR:ns ## COG: SA0598 COG1686 # Protein_GI_number: 15926319 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Staphylococcus aureus N315 # 33 415 20 400 431 229 37.0 1e-59 MNKKGLRNIARIKPFTLFLLGLVVSCGAFFAQPTVTHAEEDITAIAKKMGTTLKADGIPK AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDI SKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAE LGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITN KPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLI EVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYGV VPKGSQPTFKLVAGQVQVDTPLTLLNSTVQAPKVAYQEVKPKQTTAEAAEESNEHSGDTT VAEPNHFIPKSIATSVLVLFGLIFSVITRQLQKRLERQKKHGKESSKTASMRTIFLSAAV LSFLCAVGLFLLF >gi|307679029|gb|GL456768.1| GENE 29 24017 - 24631 818 204 aa, chain + ## HITS:1 COG:SP1738 KEGG:ns NR:ns ## COG: SP1738 COG0194 # Protein_GI_number: 15901570 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Streptococcus pneumoniae TIGR4 # 1 201 1 201 208 286 72.0 2e-77 MSERGLLIVLSGPSGVGKGTVRKAIFDSEENDFQYSISMTTRKQREGEVDGVDYYFRSRE EFEAMIEAGEMLEYAEYVGNYYGTPLTYVNQTLDEGKDVFLEIEVQGAKQVKDKVPDGVF IFLTPPDLAELKSRIIGRGTDEMSVIEERMAVAREEIEMMALYDYAVVNDEVPLAVQRIK DIIASEHFRVDRVIGKYIKMLEEM >gi|307679029|gb|GL456768.1| GENE 30 24636 - 24938 538 100 aa, chain + ## HITS:1 COG:SPy1630 KEGG:ns NR:ns ## COG: SPy1630 COG1758 # Protein_GI_number: 15675506 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, subunit K/omega # Organism: Streptococcus pyogenes M1 GAS # 2 81 1 79 104 73 61.0 6e-14 MMLKPSIDSLLKEVPSKYSLVILASKRAHELDEGVQPTVESFDSVKSVGRALEEIEAGTV ISDPNPEEKRERLRIEREERKRQREQEQKELENRLRDEKN >gi|307679029|gb|GL456768.1| GENE 31 25093 - 27525 2850 810 aa, chain + ## HITS:1 COG:lin1938 KEGG:ns NR:ns ## COG: lin1938 COG1198 # Protein_GI_number: 16801004 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Listeria innocua # 1 806 1 793 797 866 54.0 0 MQKVAKVIVDVPTMQTDQPFTYLVPENLNEQLAVGMRVEVPFGNGNRHVQGFVLAIEPMA ATVLDETNVQLKELVAVLDLKPVLNTEMLALADYMKEKTFAFKITCLQTMLPSVMRADYQ KYIYLTDELSEELQDQLFYGLEEISWDQAQERGILPQLMALRKQQKVDIRYEVTTRNKVK MVRFIQAAKEFEQLEEIRLGLRKGAKKKEQLLYYLQRLGTEKVTAVKEMKELGFSTALLN EAAKNGWLTFIEKEAYRDPFANQTFEKTTALSLNAEQQVAVETILQSVQEQQSQTYLLEG ITGSGKTEVYLQVIAEVLNQGKTAIMLVPEISLTPQMVQRFKSRFGEHVAVMHSGLSQGE KYDEWRKIERGEAEVVVGARSAIFAPIENIGVIIVDEEHEASYKQEETPRYHARDLAIWR SEYHHCPVVLGSATPSLESRARAQKNVYQRLRLTQRANQAATLPTIDVVDMRKEVENGNV SSFSMSLQEKLQERLEKNEQSVLLLNRRGYSSFVMCRDCGYVLPCPNCDISLTLHMDSKT MKCHYCGHEERIPYRCPNCGQDKIRYYGTGTQKVEEELQTLLPESRILRMDVDTTRRKGA HEKILRTFGEGQADILLGTQMIAKGLDFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQ VSGRAGRAEKPGEVIIQSFNPEHYAIQLAKAQDYEDFYTKEMYIRHRGDYPPYYFTVQIT ASHPEENEAAKQMFQIATKLKQGLSPQAILLGPTPNAIMRVNNRYFYQVIIKYKQEPMLQ PLLKEILTDTQRATARGLKLSIDAEPMNFI >gi|307679029|gb|GL456768.1| GENE 32 27552 - 28046 656 164 aa, chain + ## HITS:1 COG:BS_def KEGG:ns NR:ns ## COG: BS_def COG0242 # Protein_GI_number: 16078635 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Bacillus subtilis # 5 159 6 159 160 136 51.0 2e-32 MRYPVVIHPNEHLKMKAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVI EIDEESGHFELINPVIIEKKGTSIDVEGCLSIPETYGTVERADEVTVRYFDREGEEMEVT AYGYLARAFQHEIDHLNGELFIDKMIEKIAPEDLEAYMEEHFDD >gi|307679029|gb|GL456768.1| GENE 33 28039 - 28980 1206 313 aa, chain + ## HITS:1 COG:BS_fmt KEGG:ns NR:ns ## COG: BS_fmt COG0223 # Protein_GI_number: 16078636 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Bacillus subtilis # 1 301 1 301 317 339 56.0 4e-93 MTKIVFMGTPAFSVPILESLIEAGYDVQAVVTQPDRPVGRKKVITPTPVKEAALKHNILV LQPEKISGSPEMEKVIDLAPDLIVTAAFGQFLPEKILKAPKLGAINVHASLLPKYRGGAP VHYSIIEGEKETGVTIMEMVKKMDAGAILAQRAIPITKQDDVGTMFEKLSILGKELLLET LPKLIAGEITPIPQVEEEATFSPNITREQERIDWQKTAEAIDNQVRGMRPWPTAFTTYQG TNWKIWAVTPLTETTTSAPGTIIQRSKKALWIACGEGTVLQIDRLQPAGKGQLTIQEFLN GVGQNVAEKDKVD >gi|307679029|gb|GL456768.1| GENE 34 28986 - 30365 1492 459 aa, chain + ## HITS:1 COG:BH2507 KEGG:ns NR:ns ## COG: BH2507 COG0144 # Protein_GI_number: 15615070 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Bacillus halodurans # 11 452 4 448 450 418 49.0 1e-116 MAEKIPKKLKRSVRYVALETIERVDKGGAYSNLLLNEMMTKSELSEKDGRLFTELVYGTI SRKLLLEYYLTPFVKKPQKVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIGKRRGNP GIGKFVNGVLRAFQRNGAPSLAAISDPVDRLATEISMPRWLTEKLLAQLGEEETRQLGLS LFEKSHASGRVNTRFISREEALEELQETGIAAKESQLSPYGVVAEKGYLAGSELFINGCL TIQDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKL INENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAPCSGLGLMRRKPDIKYHKTA NDFQNLPKIQLEILESVAPTLKQWGIMVYSTCTITPEENQEVVAAFLAKHPEFEKIEIVA NENVQAVVKEQELVLYPHQYMTDGFFICCMRKVSSNEVK >gi|307679029|gb|GL456768.1| GENE 35 30367 - 31116 839 249 aa, chain + ## HITS:1 COG:SPy1626 KEGG:ns NR:ns ## COG: SPy1626 COG0631 # Protein_GI_number: 15675502 # Func_class: T Signal transduction mechanisms # Function: Serine/threonine protein phosphatase # Organism: Streptococcus pyogenes M1 GAS # 1 247 1 246 246 216 45.0 4e-56 MEINVQSDVGRKRNTNQDYANVFENQQHITFAVLADGMGGHQAGDVASQMAVNNLGESWS NASVDSAEKSAQWLIQAIQKENEKIYERGQSKPEYLGMGTTVVGAILLPDSFVLANVGDS RAYLVRDQHMLQLTEDHSLVNELVKSGEITREMAANHPRKNVLTRSLGMPGTVEVDVTNH EWLPNDYLLLCSDGLTNMVPETKILEILETSDPLESKLSQLVAQANEAGGLDNITVLVIH FDEQKEENQ >gi|307679029|gb|GL456768.1| GENE 36 31113 - 33269 2293 718 aa, chain + ## HITS:1 COG:lin1934_1 KEGG:ns NR:ns ## COG: lin1934_1 COG0515 # Protein_GI_number: 16801000 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Listeria innocua # 4 282 3 281 342 388 70.0 1e-107 MIEIGKKLNGRYHIIGSIGSGGMANVYLAHDLILDRDVAVKVLRFDFQNDQAAIRRFQRE ALAATELVHPNIVSVYDVGEEDGLQYLVMEYVKGMDLKRYIQTHFPIPYSTVVDITQQIL SAVAMAHEHRIIHRDLKPQNILIDEHGTVKITDFGIAIALSETSITQTNTMLGSVHYLSP EQARGSMATNQSDIYAVGIILYEMLTGNVPFDGESAVTIALKHFQEEIPSVKMFDPGIPQ SLENVVRHATAKDPSDRYKTANEMAEDLYTSLSASRLNEPAWEPTALLGETKVLTPIPED IAEPEETTPVEVPEDIADDILAEQPPKKNRKKLWIGLAIAALIALAIGGLAFAMSGGKDV EVPDVTNETKADASQALQSAGLKVDSETKKIPDDKIEEGKVVKTDPEAKSSVKKGRSVTL YISSGTEKIEMADYTNESYESAVEALKKLGFSEDQITTKKEYSDSVSTDNIIKQKPAAGK KVDPKKDKVTLTVSEGPEAVTLPSYAGYSYTNAVNALAQLGISESQITRVDQASDTVEPG LVITQDPAPGGTVTPKNGQVTLYVSKGSDKVTLSDYSGISYDNAVSRLIALGIPESQIKR VDEESDKVEKDTVISQEPASGTAVDPKNDTITLHVSKGSDSVTVPDISGYSPKAAEDSIN NAGLKINEQGLSGSGDGQVVERTSPSAGSKVKKGDSVTVYYSKANDSKSTTSESSTSN >gi|307679029|gb|GL456768.1| GENE 37 33518 - 34411 879 297 aa, chain + ## HITS:1 COG:lin1933 KEGG:ns NR:ns ## COG: lin1933 COG1162 # Protein_GI_number: 16800999 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Listeria innocua # 4 293 2 291 291 329 53.0 3e-90 MVYLKGQIRKALSGFYYVYADGETYQTRARGNFRNRKITPLVGDEVLFESDNLTDGYVLE ILPRRNELVRPPVANVDLGVVVMSMVSPNFSFNLLDRFLVSLEYKDIEPVIYLTKVDLLD EPQRQEVTEIKQIYEALGYAVIASEDVEATKELERFFPERLTVFMGQSGAGKSTLLNQIS PELQLATAEISQSLGRGKHTTRHVELIPLYDGLVADTPGFSAIDFLEMEAVELPKQFPEF VAAASRCKFRECMHHKEPGCEVKRQVEAGTIATSRYENYLQFLMEIENRRPVYKKKS >gi|307679029|gb|GL456768.1| GENE 38 34435 - 35088 1005 217 aa, chain + ## HITS:1 COG:lin1932 KEGG:ns NR:ns ## COG: lin1932 COG0036 # Protein_GI_number: 16800998 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Listeria innocua # 2 215 3 216 218 272 64.0 3e-73 MKLAPSILSADFANLERDIRLVEELGADYIHVDVMDGQFVPNITLGPNIVSAIRPVTKLP LDVHLMIVQPENYINAFAEAGADIITVHQEATPHIHRALQMIKNAGVKAGVTINPGTPLS MIENVLDLADQVLVMTVNPGFGGQSFIENSLEKIAQLKEWKETKGYTYEIEVDGGIVPET AARCKEAGAEVFVAGSYIYNAENPQERIDALRAVLDK >gi|307679029|gb|GL456768.1| GENE 39 35085 - 35729 579 214 aa, chain + ## HITS:1 COG:SPy0265 KEGG:ns NR:ns ## COG: SPy0265 COG1564 # Protein_GI_number: 15674445 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine pyrophosphokinase # Organism: Streptococcus pyogenes M1 GAS # 1 213 1 208 210 176 45.0 4e-44 MSRVLLVAGGNPSDWPTFEPATYDYFVGIDRGCLHLLEADLPLQLAVGDFDSLSREEYHF VQETAETLIQAPAEKDDTDTQLALQEALQRFPQAEMTIIGATGGRIDHLLANLWLPFEPR FQGVLRQIRLCDRQNSIQYYAPGSYIVPKEPDKEYLAYCCLTPVENLTLRRSKYLLTNQD VPYPTSYASNEFIEEAAAFSFDAGMIAVIQSKDK >gi|307679029|gb|GL456768.1| GENE 40 35832 - 36020 318 62 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29377572|ref|NP_816726.1| 50S ribosomal protein L28 [Enterococcus faecalis V583] # 1 62 1 62 62 127 100 2e-28 MAKVCYFTGRKTSSGNNRSHAMNSTKRTVKPNLQKVRVLIDGKPKKVWVSTRALKSGKIE RV >gi|307679029|gb|GL456768.1| GENE 41 36305 - 37195 246 296 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 2 247 11 257 312 99 27 5e-20 MSLEIKKLKKKMNEQEIIKGINLTIPEGEIYGFLGANGAGKTTIFRHILGIYSPDEGEIT WQGRKVDRFDAKEVGYLPEERGLYPKRTVRQQLTFFGKLRKMKKKEIEKSILFWMDFFKI QKNVDRKISELSKGNQQKIQFIASIIHGPKLVILDEPFSGLDPINANQLKEAILFLKENS ATIIFSSHQMANVEEICENICMMKKGEVLVEGNLKEIKDETDKRKVIVQADFDREILKQD FEIESYKEENDVISFYVKDECTAKKIQKFIFQSENIQQFRIEPISLNDIFLERVGK >gi|307679029|gb|GL456768.1| GENE 42 37197 - 38429 1141 410 aa, chain + ## HITS:1 COG:BS_yhaP KEGG:ns NR:ns ## COG: BS_yhaP COG1668 # Protein_GI_number: 16078054 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: ABC-type Na+ efflux pump, permease component # Organism: Bacillus subtilis # 11 406 11 418 419 165 30.0 2e-40 MKNIVTIALETYKQKVVSKVFVIILLVLMVGTFLGMNYEGILKKEEPSKETILVVSNNQE TVTMLKEVGKGTNLNFVDGGQKLSDAEKELKDRASKTILKIEKSSAGLYEGKIYYEGALQ YNVSEQLQSLVTTVNQSIKLNQLNIDAAQQQFLNESTRLSLESLAGNQDNSVQTLILVYI VGFILYIAVMLFSTMVAQDIAVEKSSRVMEILLTTITPVQHLIGKIVGIGLVGVTQAAAI FGAAYASYGIFGDSTGVFDFLSEGKNSQAIILAVICFVLGYLLYSVTAAILGSVVSSVQE VQQLMYILIIPLFIAMFMVMILAAGLGSNQATIISSYIPYLSPIVMYARYMLGDASLNAF AVAMGINLVFTAILAFLGKSVYQGGVFIYSGDKLINVFKKAFKSGKYYVR >gi|307679029|gb|GL456768.1| GENE 43 39156 - 39986 171 276 aa, chain + ## HITS:1 COG:lin0043 KEGG:ns NR:ns ## COG: lin0043 COG2972 # Protein_GI_number: 16799122 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Listeria innocua # 1 269 162 430 431 151 31.0 1e-36 MIIYYTSLVLGKYLGNNKEIIVVNSIFLTLYLVVSLISFIVYLSSLKNKYDIQQKETEYL ENQRYMEAMEKQFKEIRKFRHDYKNILNSLEDFIVSGDYESLNDYYFSKIKKASKCIDQN GFKLEAIGNIRVREVKSLLVSKLISTQEKGMDVQLELTEPIEELAIDSISLVRILGIFLD NSIEEIEFLGEGKLVIAVYKDASAVHIIIQNSCRKNLPKFHLLKQRGFSLKGTDRGMGLS NVQELLQSLNNVQLATSISDGWFTQKLTIENNRRCE >gi|307679029|gb|GL456768.1| GENE 44 39988 - 40707 473 239 aa, chain + ## HITS:1 COG:CAC0081 KEGG:ns NR:ns ## COG: CAC0081 COG3279 # Protein_GI_number: 15893377 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Clostridium acetobutylicum # 1 239 1 239 241 204 45.0 1e-52 MISIIICEDDWRQRQMLETYVKNYIMMESLDMELVFSTGNPLEVLEFVKSQSRIIGLYFL DVDLQHEMSGLTLAAKIRDYDNLGKIVFVTTHGELSYLTFTYKVEALDYIIKDNKEHLQQ KICENIQLAHERITSERGDTKKLFKFKDGDTIRSVDMATIIFFESSSVSHKIVLHLENGE IEFYGSLKEIEEQSNDFYRCHKSYLINRKHISKVIKSERIVEMSNGERCLVSVRAMKNL >gi|307679029|gb|GL456768.1| GENE 45 40919 - 41281 627 120 aa, chain + ## HITS:1 COG:lin1929 KEGG:ns NR:ns ## COG: lin1929 COG1302 # Protein_GI_number: 16800995 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 120 1 120 121 142 64.0 1e-34 MAVKIQTPAGTIEITNDVIATVVGGAATDIYGIVGMASKNQIKDNLNDILRRENYSRGVV VRQEDNGIAVDVYTIVSYGTKISEVSRNVQEKVKYNLETLLGVTANSVNVFVQGVRVLPD >gi|307679029|gb|GL456768.1| GENE 46 41364 - 43040 2479 558 aa, chain + ## HITS:1 COG:SP0443 KEGG:ns NR:ns ## COG: SP0443 COG1461 # Protein_GI_number: 15900360 # Func_class: R General function prediction only # Function: Predicted kinase related to dihydroxyacetone kinase # Organism: Streptococcus pneumoniae TIGR4 # 3 558 1 555 555 644 62.0 0 MNVTEISAGQFQEMVQAGATRLHTNAEYVNSLNVFPVPDGDTGTNMNLSMTSGAKAVADS RSEKVGELAGALSKGLLMGARGNSGVILSQLFRGFSKQIPEVTTLNAKDLAAAFTHGVET AYKAVMKPVEGTILTVSREAARSGERKAKETDDCIEVMTAVVAGAKRALAKTPDLLPVLK EVGVVDSGGQGLLFIYEGFLEALSGEFLPTETYEPSPAEMDEMVNAEHHRGVSGHVATED IKFGYCTEIMVRIGEGPTVDSAFDYETFRNYLNELGDSLLVVNDDEIIKVHVHTEHPGEV MNYGQKFGSLVKIKVDNMRLQHETLVERDAQQEALTEKVRVPFAVIAIAAGEGVQELFRS LGASYIISGGQTMNPSTEDILKAVKEVNAEQVIILPNNKNIFMAADQAAEVADVPVAVVP SKTISQGMTAMLAFNDQQSLEENKASMTEMLDSVVSGQVTTAVRDTTIDDVEIKKDDFLG MIDGKIVVSEADRFNASLDTLNRMIDEDTEIVTIIVGEDGSVEEAEKLIAILVSENDELE TELHEGGQPVYPYLFSAE >gi|307679029|gb|GL456768.1| GENE 47 43292 - 45328 2119 678 aa, chain + ## HITS:1 COG:SPy1785 KEGG:ns NR:ns ## COG: SPy1785 COG1200 # Protein_GI_number: 15675625 # Func_class: L Replication, recombination and repair; K Transcription # Function: RecG-like helicase # Organism: Streptococcus pyogenes M1 GAS # 1 671 1 668 671 756 56.0 0 MDITDLVSVLPGVGPKRAENLQELGIATIEDLLTYYPFRYDDIQEKDLSEIQDQEKVTLK GLVVSEAVVSRYGYKKSRLTFRMMQEHAVINVSFFNQPFLKDKVVLSEEIAVYGKWDAKR KSLNGMKILASKGDNEDFAPIYHVNKKVRQSTLVQLIRTAFEEYGSLVEEILPNDLLEKY RLMPRKEAMWAMHFPSNPEESHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDV DRLKTFTQGLPFELTGAQKKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMT AGFQGALMVPTEILAQQHMESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIV VGTHALIQQDVSFHQLGLVITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITA YGEMDVSIIDEMPAGRIPIETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALD VKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNV PNATVMLIMDADRFGLAQLHQLRGRVGRGSSASYCILVANPKNEMGVERMKIMTETTNGF VLSERDLELRGPGEVFGARQSGVPQFAVGDIVTDFNILEVARQEASSLWQVKEWWQYPAY QGLANRVKPQDEAAQFFD >gi|307679029|gb|GL456768.1| GENE 48 45431 - 46432 1341 333 aa, chain + ## HITS:1 COG:SP0037 KEGG:ns NR:ns ## COG: SP0037 COG0416 # Protein_GI_number: 15899983 # Func_class: I Lipid transport and metabolism # Function: Fatty acid/phospholipid biosynthesis enzyme # Organism: Streptococcus pneumoniae TIGR4 # 2 331 3 330 330 428 70.0 1e-120 MKIAVDAMGGDNAPQAIVEGVMLAKQDFPDIEFQLYGKEAEIKKYITDEKNITIIHTDEK IASDDEPVKAIRRKKTASMVLAAQAVKNGEADAIFSAGNTGALLAAGLFIVGRIKNVERP GLMSTLPVMGEPDKGFDMLDLGANADNKPEHLVQYAVLGSFYAEKVRNVQNPRVGLLNNG TEETKGSELTKKAFELLAADETINFVGNVEARELLNGVADVVVTDGFTGNAVLKSIEGTA MNMMSLLKTAILSEGVKGKMGALLLKNALRGMKDEMDYSKHGGAVLFGLKAPVIKTHGAT GPDAVRYTIRQIHTMLETQVVPQLVEYYEGKAE >gi|307679029|gb|GL456768.1| GENE 49 46569 - 46808 413 79 aa, chain + ## HITS:1 COG:lin1920 KEGG:ns NR:ns ## COG: lin1920 COG0236 # Protein_GI_number: 16800986 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Listeria innocua # 5 79 3 77 77 61 57.0 5e-10 MTREEVLQKVAKIISNHFDIEADQVTDQLNIKDDLNADSISVMEFVLELEDEFGTEISDE DAEKIETVGAAVDYIVSNS >gi|307679029|gb|GL456768.1| GENE 50 47105 - 48112 601 335 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 4 324 8 328 329 236 40 4e-61 MQGNEQLLEVSGLETAFRIKDDYYNAVDDVSFELKKNEILAIVGESGCGKSTLATTIMGL HDPNHTKITGEILYNNLNLTTFNETLYNKVRGNDIGMIFQDPLSALNPLMRIEDQIKESL TYHTKMTAQQKQARAIELLDQVGIPNPERVGKQYPHELSGGMRQRVIIAIAIACKPPILI ADEPTTALDVTIQAQILDLLKDLQEETGSGIILITHDLGVVAEMADRVAVMYAGQFVEVA TAEELFSHPKHPYTRSLLQSIPQENSDEEELHVIEGIVPSLTKLPRKGCRFAPRIPWIDA SEHEENPTLHEVAPNHFVRCTCYKHFHFRDGEGEA >gi|307679029|gb|GL456768.1| GENE 51 48112 - 49056 1119 314 aa, chain + ## HITS:1 COG:L92192 KEGG:ns NR:ns ## COG: L92192 COG4608 # Protein_GI_number: 15673822 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, ATPase component # Organism: Lactococcus lactis # 1 312 1 312 319 415 64.0 1e-116 MTEIIQIKDLKVHYPIRSGFFNRITDHVLAVDGVDFMIEQGKTYGLVGESGSGKSTTGKA IIGLEKITNGEIIYQGQDVTKPRSRKAIGYNKDVQMIFQDSMSSLNPKKRVLDIIAEPIR NFERLSDQEEKKKVKSLLDIVGMPEDALYKYPHEFSGGQRQRLGVARAVATSPKLIIADE PVSALDLSVQAQVLNFMKNIQQEYGLSYLFISHDLGVVKHMCDNIAIMYKGRFVEIGTRQ DIYTNPQHIYTKRLLSAIPKIDVANREAHKEERRRVEQEYRENHKDYYDENGRVYNLHAI SPTHQVALKNGGAE >gi|307679029|gb|GL456768.1| GENE 52 49056 - 50018 1175 320 aa, chain + ## HITS:1 COG:BH3638 KEGG:ns NR:ns ## COG: BH3638 COG0601 # Protein_GI_number: 15616200 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus halodurans # 1 320 1 322 322 348 51.0 5e-96 MWKTILRRLLLMIPQVIILSVLIFLLAKMMPGDPFTGLINPNQDPKVIEAMREAAGLNDP WYEQYFRWIGNALHGDFGHSFIFKLPVSTLIAGRVGNTIALAAVSVIITYLIAIPFGLIA GRYQNSWFDKMVVIYNFFSFAVPLFIFALIMLFIFGYRLDWFPTSGTVTVGLAEGTWPYY LDKLKHLILPGVTQALLGTAVTIQYLRSEVIDVKNMDFVRTARSKGVPTNKIFNRHIFRN AALPIASQLGYEITALIAGSVVIEKIFAFPGIGKLFIDSIIQRDYSVITALVLILGLATL IGTLISDIVMSIVDPRIRIQ >gi|307679029|gb|GL456768.1| GENE 53 50046 - 50969 1142 307 aa, chain + ## HITS:1 COG:BH3637 KEGG:ns NR:ns ## COG: BH3637 COG1173 # Protein_GI_number: 15616199 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus halodurans # 18 307 19 302 302 301 57.0 8e-82 MELTEEKREEVLQESIPPMGFRMIAREFVKEKMAMFSLILLVIILLAVFIGSLVLDQSAV MHVSILDKYAEPGTVTMNGTKFILGADEGGRDVLGQLIIGARNSILIGFAITIITSIIGV GLGIISGYYGGMIDNILMRIVDFIMILPIMLIIIVFVSVIPKYSIWSFIWIMCAFYWVGK ARLFRSKTLSEGRRDYVSASKTMGTSDFKIMFREIMPNLSSLIITNLTINFAANIGIETT LTFLGFGLPQSVPSLGTLIGYASSGDVLVNKQWVWLPASILILVLMLSINYVGQAFKRSA DARQRLG >gi|307679029|gb|GL456768.1| GENE 54 50998 - 52776 2361 592 aa, chain + ## HITS:1 COG:BH3636 KEGG:ns NR:ns ## COG: BH3636 COG0747 # Protein_GI_number: 15616198 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Bacillus halodurans # 45 575 64 588 610 499 47.0 1e-141 MNKKRILGAITLASVLVFGLAACGGGNKGGGNKATETEDISKMPIAVKNDKKAIDGGTLD VAVVMDTQFQGLFQQEFYQDNYDAQYMLPTVQPLFNNDADFKIVDGGPADLKLDEDANTA TIKLRDNLKWSDGKDVTADDVIFSYEVIGHKDYTGIRYDDNFTNIVGMEDYHDGKSPTIS GIEKVNDKEVKITYKEVHPGMQQLGGGVWGSVLPKHAFEGIAVKDMESSDAVRKNPVTIG PYYMSNIVTGESVEYLPNEHYYGGKPKLDKLVFKSVPSASIVEAMKAKQYDIALSMPTDT YPTYKDTEGYQILGRPEQAYTYIGFKMGTFDKETNTVKYNPKAKMADKSLRQAMGYAIDN DAVGQKFYNGLRTGATTLIPPVFKSLHDSEAKGYTLDLDKAKKLLDDAGYKDVDGDGIRE DKEGKPLEIKFASMSGGETAQPLADYYVQQWKEIGLNVTYTTGRLIDFQAFYDKLKNDDP EVDIYQGAWGTGSDPSPTGLYGPNSAFNYTRFESEENTKLLDAIDSKASFDEEKRKKAFY DWQEYAIDEAFVIPTLYRNEVLPVNDRVVDFTWAVDTKDNPWATVGVTAEKR >gi|307679029|gb|GL456768.1| GENE 55 53106 - 53798 972 230 aa, chain + ## HITS:1 COG:lin1919 KEGG:ns NR:ns ## COG: lin1919 COG0571 # Protein_GI_number: 16800985 # Func_class: K Transcription # Function: dsRNA-specific ribonuclease # Organism: Listeria innocua # 8 228 6 226 229 257 58.0 1e-68 MDNQLTTELKERYGIVFHDVNLLEQAFTHSSYVNEHRYLKLSDNERLEFLGDAVLELIVS QYLYLKFPELPEGKLTKMRAAIVREDSLAKFAKECHFDNYILLGKGEEASGGRTRASLLC DLFEAFLGALYLDQKVGAAKKFIEDVIFPKIDAGAFSHEMDHKTQLQEVLQRKGDVSIEY RLIKEEGPAHDRTFFTEVYMNGELIGLGQGKSKKLAEQDAAERALKSIPQ >gi|307679029|gb|GL456768.1| GENE 56 53819 - 57397 4581 1192 aa, chain + ## HITS:1 COG:lin1918 KEGG:ns NR:ns ## COG: lin1918 COG1196 # Protein_GI_number: 16800984 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Chromosome segregation ATPases # Organism: Listeria innocua # 1 1184 1 1183 1186 874 47.0 0 MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLKYKQRKKKAEQK LFETEDNLSRVQDIIYELEDQLVPLAAQADAAKKYLALKEELTEIDVNLTVTEIQEAKAI WETKTQELTAIEEKLAGASKQVHDLEGKLVRLRSKRNRLDEQIETEQQQLLQVTEALKQA EGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREELQTLETAIAEKTAQRQTLKEAL VLATKDVEKYSKSSKELMEELRSQYVEVMQEQANTANDLKYLERQYQQETAKNQQSLAKH EALEEQMVEALAMKETLEKEQKVAKQGLQEQLEEYTALKATLEAKRERLAQRQNDMYQAM NQVQQAKARQKSLQEIQENYAGFYQGVKAVLRHKNQLTGIVGAVAELIEVPKEYTLAIET ALGGAAQHIVVENEKDGRAGITFLKQQHSGRATFLPLTTIKPRSVSAMVQNRLAGAPGFV GIASELVRYPEQVQTVIQNLLGVTILAADLTSANQLAKLVNYQYRVVSLEGDVMNPGGSM TGGANKRGNQGSLFSQAQELQTITEQMTQLETQLRSVEQEVQALSQEVKTATERAEMLRS AGEQNRLKQQEIDNKLANQTETITRLTKEKRLFEYESRELHQFLTEYQTKKATLTEQQAS LTATKERLDAEMKQVEQEASQMETFKAQAQERLTTVQAEQAVAAEQCAHFARQKQDKQEQ LDELLIRETAIRQQLQQLSSHSSDHQLTEEGLAAQVAQLAEKQTALQTSLQTARSQRQAL QEEVDELDTKLAEENKRQQQYLADKTQIEVLKNRAEMQLDSSLSYLQEEYSLTFEAAYEA YFPIDDLAQAQQTVKRLKQEIERLGPVNLSAIEQFEQVDERHQFLVSQRDDLLNAKEQLF ETMDEMDQEVKERFKEVFEAIRGQFKVVFPNMFGGGRAELVLTNPEDLLNTGIEIEAQPP GKKLQHLSLLSGGERALTAIALLFSIIRVRPVPFCILDEVEAALDEANVARFGHYLSEFE DGTQFIVVTHRKGTMEAADVLYGVTMQESGVSKIVSVRLEEVKEGGAIEKSN >gi|307679029|gb|GL456768.1| GENE 57 57422 - 58249 1181 275 aa, chain + ## HITS:1 COG:L22687 KEGG:ns NR:ns ## COG: L22687 COG0561 # Protein_GI_number: 15672793 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Lactococcus lactis # 2 268 5 269 269 246 50.0 5e-65 MIKLVAIDLDGTLLNSQKEISLRNKQALMAAKQAGVKVVICTGRPLAAIGPYLEELGLQE EGDYSITFNGGLVQKNDTGAIIEKTLMPLEAIHELYQLATTLNMPFDVLSDEVVMQLPSA PNYPSIYSSLNKLLTFESYKLEELTPNRIYNKVVVAIDEAYLNERIKEIPASFYERFEII KTRNNLLEFMPKGITKAYGISLLAKDLGIRAEEIMTLGDEENDLPMIEYAGLGVAMANAI PLVKEAADVVTDTNDQDGVAKAVEKYILTPLEGGQ >gi|307679029|gb|GL456768.1| GENE 58 58252 - 59580 999 442 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 [Bacillus selenitireducens MLS10] # 127 441 13 326 336 389 61 1e-107 MGFFDKIKKAFSAEKKEEEKQEIVEETVDETPSDESAPAESKETAAEEAQTTPETAAEEV AETADLTDNAEMEKLAGVEEALEEEPEEILTEETQEVVVEAPEEESSVVTPLAEPTDTQV SEEIEESKEEQVQEKYEKGLEKTRKTFGQRLNELFANFRSVDEDFFEELEETLIGADVGF DTSLKITEALRQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINLQPNGLTVILF VGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERASVEVVRGNAGG DPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREIPDAPHEVLLV VDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPVKLVGLGEGIN DLEPFNANDFAMGLFKGLLKDV >gi|307679029|gb|GL456768.1| GENE 59 59739 - 60224 727 161 aa, chain + ## HITS:1 COG:SP2081 KEGG:ns NR:ns ## COG: SP2081 COG3542 # Protein_GI_number: 15901897 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 7 155 2 150 153 155 58.0 3e-38 MTEQMWIEKLGLEAHPEGGYFKQTNKSEQLIPTKRGERALHTAILFLLNTESPSHFHRLK ADELWFFHDGQPLTVHCIFPDGTYQAVQLGKDLVQGQQLSFSVPAGTIFGSTVATGFALV SCVVTPGFEFEDFELFTQAELLNDYPQHSEIIQHLAYRELP >gi|307679029|gb|GL456768.1| GENE 60 60344 - 60742 472 132 aa, chain + ## HITS:1 COG:L151700 KEGG:ns NR:ns ## COG: L151700 COG3607 # Protein_GI_number: 15673301 # Func_class: R General function prediction only # Function: Predicted lactoylglutathione lyase # Organism: Lactococcus lactis # 1 130 1 130 137 161 60.0 3e-40 MGTMVFVNFPVADVQRSTAFYEKLGFKKNEEFSTEEASSMMWDDQFWIMLLNHDFYGKFI QEKQIIDAQTTSGALISFSLESAEAVKQFGETAKANGGNCYRVDMGIPEEQMYGLEVQDL DGNSLEPVWMKM >gi|307679029|gb|GL456768.1| GENE 61 60793 - 61689 1197 298 aa, chain - ## HITS:1 COG:SPy2209 KEGG:ns NR:ns ## COG: SPy2209 COG1284 # Protein_GI_number: 15675941 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pyogenes M1 GAS # 8 282 3 277 290 231 49.0 2e-60 MNKFFTAQRLKDTAYVTVGAFILAISINAVLLPNKLVAGGANGISIVINYVFGISPAIVL YAINIPLLVLCFLLLGKEVGVKTIYGSLIYPFFVGITSGMPVLTHNIFLAALFGGIITGA GLGLVFRGNASTGGTAIISQIVNKYFKVSLGIAILFVDGLVILSAMHAFNADIVLFSLIC LFTIGRVVDMIQVGLVRSKNVMIISPKYVAIQERLLRELDKGVTLVPIEGGYRNAKGMLL MTVIREKDFPRLKEAILEIDEEAFLISMSASEVYGKGFSLKKVADSYGVEATNANNLQ >gi|307679029|gb|GL456768.1| GENE 62 62236 - 62736 443 166 aa, chain - ## HITS:1 COG:L125244 KEGG:ns NR:ns ## COG: L125244 COG1335 # Protein_GI_number: 15674036 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Lactococcus lactis # 5 164 18 175 176 133 43.0 1e-31 MKNRALLLIDFQKGIESPTQQLYRLPAVLDKVNQRIAVYRQHHAPIIFVQHEEIELPFGS DSWQLFEKLDAQPTDFFIRKTHANAFYQTNLNDLLTEHDIQTLEIAGVQTEFCVDTTIRM AHGLGYTCLMTPKTTSTLDNGHLTAAQIIQHHEAIWAGRFLTFLSL >gi|307679029|gb|GL456768.1| GENE 63 62907 - 65177 2607 756 aa, chain + ## HITS:1 COG:PM1048_1 KEGG:ns NR:ns ## COG: PM1048_1 COG2918 # Protein_GI_number: 15602913 # Func_class: H Coenzyme transport and metabolism # Function: Gamma-glutamylcysteine synthetase # Organism: Pasteurella multocida # 21 480 21 481 481 390 47.0 1e-108 MNYRELMQKKNVRPYVLMARFGLEKENQRSTREGLLATTDHPTVFGNRSYHPYIQTDFSE TQLELITPVANSGTEMLRFLDAIHDVARRSIPEDEMLWPLSMPPQLPTKDEEIKIAKLDQ YDAVLYRRYLAKEYGKRKQMVSGIHFNFEYDQALIQQLYDEQSEVTDCKQFKTKVYMKVA RNFLRYRWLITYLFGASPVSEDGYFRVYDDQPQEPIRSIRNSTYGYRNHDNVKVSYASLE RYLEDIHRMVENGLLSEEKEFYAPVRLRGGKQMSDLPKTGIRYIELRNLDLNPFSRLGIV EDTVDFLHYFMLYLLWTDEKEEADEWVKTGDIFNEQVALGHPHETIKLIAEGDRIFSEMI DMLDALGIRKGKEVVGKYYQQLRNPQDTVSGKMWTIIQENSNSELGNIFGNQYQSMAFER PYQLAGFREMELSTQIFLFDAIQKGLEIEILDEQEQFLKLQHGEHIEYVKNANMTSKDNY VVPLIMENKTVTKKILSAAGFHVPGGEEFSSFIEAQEAHLRYANKAFVVKPKSTNYGLGI TIFKEGASLEDFTEALRIAFKEDTAVLIEEFLPGTEYRFFVLDNDVKAIMLRVPANVTGD GKHTVEELVAAKNSDPLRGTNHRAPLELIQLNDLEKLMLKEQGLTIYSVPEKEQIVYLRE NSNVSTGGDSIDMTDVIDDSYKQIAIEAVAALGAKICGIDLIIPDKDVKGTRDSLTYGII EANFNPAMHMHVYPYAGQGRRLTMDVLKLLYPEVVQ >gi|307679029|gb|GL456768.1| GENE 64 65366 - 65467 66 33 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSIEAALELMISFAAFVALLIFGILEATKNDKK >gi|307679029|gb|GL456768.1| GENE 65 65799 - 65900 66 33 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSIEAALELMISFAAFVALLIFGILEATKNDKK >gi|307679029|gb|GL456768.1| GENE 66 66085 - 66537 613 150 aa, chain - ## HITS:1 COG:BS_yueI KEGG:ns NR:ns ## COG: BS_yueI COG5506 # Protein_GI_number: 16080228 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 124 1 122 132 72 32.0 3e-13 MANDDLQQRLDKGMYGTPLVNPEEQHKYMGTFRERCRLSMTVAEMKDAQNQKHLLEELAK HPEVTVLLNGEISSDLQSTYIKLLNQHGANFKIVNNFVENNPDSLGLLLAEKHAVDEPVI DVTEKYPQATETPKEEPTAKKGFWQKLFHS >gi|307679029|gb|GL456768.1| GENE 67 66722 - 67669 921 315 aa, chain + ## HITS:1 COG:BH1025 KEGG:ns NR:ns ## COG: BH1025 COG4606 # Protein_GI_number: 15613588 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type enterochelin transport system, permease component # Organism: Bacillus halodurans # 1 314 1 314 317 277 51.0 2e-74 MKKIGLFVLLLLFSLLSLVIGVKDIALSQLFQLDAQQQFVLFTTRVPRTLSLIIAGSTMS ISGLIMQQLTQNKFVAPSVAGTTDSARLGILVAMLFFPTAPFLYRTAIAFIFALSGTLLF LALIRLLPSKNQVMVPLVGVMFGNILGSIATFFAYQYQLVQNMSAWLQGNFSTVMKGNYE WLFLMIPLWFVIYLFAYHFTVVGMGEAFANSLGVHYQRIQFLGLTLVALASAIVLLMVGN IPFLGVVIPNLVSLRYGDHMKNTLWLTGICGSLFLLICDILARVLIAPYEIPVSVVVGTL GSILFILLLLRGRKQ >gi|307679029|gb|GL456768.1| GENE 68 67666 - 68631 850 321 aa, chain + ## HITS:1 COG:BS_yclO KEGG:ns NR:ns ## COG: BS_yclO COG4605 # Protein_GI_number: 16077449 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type enterochelin transport system, permease component # Organism: Bacillus subtilis # 12 318 7 313 315 207 41.0 2e-53 MKRPLKKWLSLLLLLAAVVIVSLCYLTYNTYGNWSFALALRGKKLLAFIFVGIAAAFSTI SFQTVTQNHFLTPNILGMDSLYVFVQTVLFFLLGGAQALGQVSLGSFLMNVFLMVFLSTS LSYFLLRKNQSDLFLLLMIGMILGTFFSSISTFLQVIMDPNEYDLLQGKLFASFGNVNSQ YLIFVGVAVLIIFGILWRESYRLDVLHLGNHQAQNLGIAVNQFQLVLLCLISSLVGLSTA LVGPITFLGFIVANMSYQFMKTYRHRELFVAGSLIAVFLLVFGQLMVEQVFHLNTPLSVV IQFVGGVYFIWKIIAERKQRT >gi|307679029|gb|GL456768.1| GENE 69 68628 - 69383 274 251 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 223 1 226 245 110 29 3e-23 MIQMSDVSKKYGDKFVVSDIDLPISEGKLTAFIGPNGAGKSTLLAMMSRLIPKDTGEIYL DKQEVKTWKQSAFSQKIALLKQANGVQLKLTVRELVNFGRFPYSKGRLKSADHEKVTEAL EQLGLTEMAEEYIDTLSGGQLQRAYIAMILAQDTDYILLDEPLNNLDMNYAVQMMQILKR LVDELGKTILIVLHDINFAASYADEIVAMKGGKLYAHGATEEVIQTSILNDLYEMNIRIC EIEGKRFCLYH >gi|307679029|gb|GL456768.1| GENE 70 69422 - 70375 1246 317 aa, chain + ## HITS:1 COG:BS_yclQ KEGG:ns NR:ns ## COG: BS_yclQ COG4607 # Protein_GI_number: 16077451 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type enterochelin transport system, periplasmic component # Organism: Bacillus subtilis # 3 317 2 316 317 268 48.0 9e-72 MKKKFLAMMAVSMMGLLMLSACQTNKKTADSATKETTAKTEVTVKDTNGQLTVPKNPQKV VVFDNGSLDTMDALGVGDRVVGAPTKNIPAYLKKYQKVESAGGIKEPDLEKINQLKPDLI IISGRQQDYQEQLKAIAPTIYLAVDAKNPWASTKQNIETLGTIFDKEEVAKEKITGLEKE IADVKKQAEASANDALVVLVNEGQLSAYGKGSRFGLIHDTFGFKAADDKIEASTHGQSVS YEYVLEKNPGILFVVDRTKAIGGDDSKDNVAANELIQKTDAGKNDKVIMLQPDVWYLSGG GLESMHLMIEDVKKGLE >gi|307679029|gb|GL456768.1| GENE 71 70819 - 72462 1816 547 aa, chain + ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 2 545 4 548 549 385 38.0 1e-106 MKLGKKVVGLIATGFLLAACGGTKEAAEKVDSGNLAAEQKISISSPAPISTLDTTQTTDK NTFTMAQHLFEGLYRFDDDSATVPALAKDVKISDDGRKYHFTLREGIKWSNGEPITAQDF VYSWKKLVTPATIGPNAYLLDSVKNSFEIRNGEKSVDELGISAPNDKEFIVELKQAQPSF LAVVSIAWLAPQNQKFVEAQGKDYALDSEHLIYSGPFTLANWDATSDTWTLKKNPEYYDA DQVKLEEVAVSTIKEDNTGINLYQANELDLVRINGQYVQQYQDDPGYVSHPDVANYFLDF NKKEGTPLANVHLRKAIGQAIDKEALTQSVLNDGSKPLNGLIPSKLYANPETDEDFRAYS GEYLKNDVKKAQAEWTKAQADVGKKVKLSLLAADTDQGKRIAEYVQSQLQENLPGLEITI SSQPSNNVNQSRREKNYELSLSGWIAGSSELDSYFNLYAGESSYNYGNYHNAKYDQLVED ARTINANNPEKQFAEYKEAEDILLNQDAAQVPLYQSASNYLINPKLKGISYHLYGDYFHL RNAYLTE >gi|307679029|gb|GL456768.1| GENE 72 72484 - 73704 1363 406 aa, chain + ## HITS:1 COG:FN0733 KEGG:ns NR:ns ## COG: FN0733 COG2195 # Protein_GI_number: 19704068 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Fusobacterium nucleatum # 4 405 9 410 412 456 55.0 1e-128 MEKLVERFLTYVKVNTRSDANSQTTPTTVGQVVLAKMIETELHELGLADVHYNEQNGFLT ARLPGNQPAAKSIGLIAHLDTADFSAENIRPQVITNYDGQDVLLNQEQGIVLSVAEFPNL KEYQGETLITTDGTTLLGADDKAGIVEILAAVEYFLAHPEVARGDVWLAFGPDEEIGRGA DQFDAPNFPVAFAYTIDSGRVGHFEYETFNAAQAVITIEGTSVHPGTAYGSLVNAIKLGE QLDQSLPQKEVPEQTRGNEGFYLLNKFTGSIEKAELVYIIRDHDQENFQARKQFLEKQVQ RLNALADKPRLTITFQDQYYNMKEIIEKDWTPVELAVQAMESCDIEPIITPFRGGTDGSK ISFMGIPTPNLFTGGENFHGQYEFITVESMAKAVQTIIAIIRLNAN >gi|307679029|gb|GL456768.1| GENE 73 73790 - 74347 281 185 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116511539|ref|YP_808755.1| SSU ribosomal protein S5P alanine acetyltransferase [Lactococcus lactis subsp. cremoris SK11] # 1 151 1 145 186 112 40 5e-24 MNYPLIFAENQRIETERLILRPVTLADAEDMYEYASDEETVRYVFLKNQTIAETRQNIAK FFMGEPLGKYGIEVKETGKMIGTIDLRVNETNNIGELGYVLNRAFWGNGYMPEAATALVE LGFAKMKLMRIFALHDQDNPASGRVMEKIGFTYEGTLPNARISKGKIVTDVYRGMTLETW QNRQK >gi|307679029|gb|GL456768.1| GENE 74 74382 - 74993 799 203 aa, chain + ## HITS:1 COG:lin1053 KEGG:ns NR:ns ## COG: lin1053 COG4493 # Protein_GI_number: 16800122 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 4 201 6 203 204 161 41.0 8e-40 MLMFTEKEFAAFEVAGLDERMAVIRAQIQPIFQELDTYFAEQLAPELGTELFVHIAQHRR RTVYPPENTWSALSPNKRGYKMQPHFQLGIWGDYVFMWLSFIDNPKNEKQIAQAFLENQQ LFQALPEDTYVSLDHTVPQITPLMETDLEKALTRFRDVKKGEFEIGRIIPKDSDLWQNPE KARAYMLATYQQLLPLYQLAVAQ >gi|307679029|gb|GL456768.1| GENE 75 75359 - 75721 371 120 aa, chain + ## HITS:1 COG:no KEGG:EF3076 NR:ns ## KEGG: EF3076 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 120 1 120 120 198 95.0 6e-50 MKKKRYLIIACLLFSPSFFINVEASDGGSSSVGIEFYQNPRTPAPKDAPPKTDAPAADPK EPDGPPQGDQRSGGSTQTTTTGSQLPRTGSKSQANLSILGLVLIGLVGMVQRKKGRHEAN >gi|307679029|gb|GL456768.1| GENE 76 75708 - 77982 1723 758 aa, chain + ## HITS:1 COG:no KEGG:EF3075 NR:ns ## KEGG: EF3075 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 564 1 563 1426 955 95.0 0 MKQTKWQRLATIGLCSSLVINAFSGVTAVAETITIESSPTVASSAKEATSASSATPASTE SSQETTETSREEVTQETVEQEDTTEIAQEENLLEPSGIQAKIMPRAFVWAATGTTNRTTV RLNDVVDYRMKLENITTDDTNSDIVGPIRIESKLAAGMTRPTSVIIKVGPEEQNVVIGEG SHNANSGGEYFVWTESTRTVTAFINRLHGRTSGNTGYIKTLYFQTRITSGTHNEKKYIDS TIRFNGFGAVNRRNEMTYVDRFSGNLGLKGNLKFYDEDGVASKEQMSLSINPVLFKSTNS RVEGTLLRYPLTMTNAGSGLYRFDTGLKNIGTSNGGSWFFFSNDIVINFATATTNRIDKI VLAPPKATLPDSRTGVMTSRAYTSTTYTRSNYDISTYNFTKATGKTWRITNRSSNSGVST NIMFSDNLVGTTGQFNKGNSGATINYYIYYKKLYENFVNSNGQKITPPSGFTQGKRTVIN SEAYTFKQSGTLPDTYQADGKTYKFKGWYKGKTKPNTLTATKAPSYAVTYDDNDDLNVVY EEVVPRDTWVYPGFYAEFVDEQGKAFTNPLTFSGNYTQFLRKKTVNIFETTGNLYPMIGS KDPSQSNKYKIETQSRIPISATYDGNVTGDVYDKREYGLHDLTITNELKYVDKIEVMNTS LQAADYLVGYVGIDPILIDFPNILHPLERAFIKNTNQRFSINAIFGANGSASTIPRLLRI GGKDQPNQRNVTLMGFDGTTNYKHTMNYKVTRKQVTEN Prediction of potential genes in microbial genomes Time: Tue Jul 5 18:34:37 2011 Seq name: gi|307679028|gb|GL456769.1| Enterococcus faecalis TX0312 genomic scaffold Scfld30, whole genome shotgun sequence Length of sequence - 340263 bp Number of predicted genes - 311, with homology - 307 Number of transcription units - 139, operones - 80 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 37 - 1407 1489 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase - Prom 1444 - 1503 10.1 + Prom 1294 - 1353 7.8 2 2 Op 1 . + CDS 1539 - 2339 849 ## COG2137 Uncharacterized protein conserved in bacteria 3 2 Op 2 . + CDS 2329 - 3513 1222 ## COG1194 A/G-specific DNA glycosylase + Term 3514 - 3568 9.2 + Prom 3568 - 3627 5.1 4 3 Op 1 . + CDS 3694 - 4818 1113 ## COG1316 Transcriptional regulator + Prom 4905 - 4964 10.0 5 3 Op 2 . + CDS 5010 - 5441 527 ## EF2702 hypothetical protein + Term 5445 - 5494 15.1 - Term 5433 - 5481 7.3 6 4 Op 1 . - CDS 5486 - 6010 763 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 7 4 Op 2 . - CDS 6027 - 6848 908 ## COG1051 ADP-ribose pyrophosphatase - Prom 6924 - 6983 8.1 8 5 Op 1 4/0.054 - CDS 7046 - 8233 1595 ## COG3853 Uncharacterized protein involved in tellurite resistance 9 5 Op 2 . - CDS 8253 - 8933 816 ## COG4915 5-bromo-4-chloroindolyl phosphate hydrolysis protein - Prom 9165 - 9224 6.1 + Prom 9175 - 9234 9.4 10 6 Op 1 . + CDS 9336 - 9920 602 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 11 6 Op 2 . + CDS 9917 - 10213 444 ## EF2695 hypothetical protein 12 6 Op 3 . + CDS 10229 - 10924 1066 ## COG0775 Nucleoside phosphorylase + Term 10928 - 10992 23.9 - Term 10921 - 10973 18.0 13 7 Op 1 6/0.000 - CDS 10991 - 11257 292 ## COG2827 Predicted endonuclease containing a URI domain 14 7 Op 2 . - CDS 11247 - 11981 891 ## COG4123 Predicted O-methyltransferase - Prom 12014 - 12073 6.6 + Prom 11976 - 12035 5.9 15 8 Tu 1 . + CDS 12170 - 12796 758 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase + Term 12827 - 12874 4.0 + Prom 12896 - 12955 7.8 16 9 Op 1 28/0.000 + CDS 12980 - 14116 1040 ## COG0420 DNA repair exonuclease 17 9 Op 2 1/0.216 + CDS 14121 - 17258 3834 ## COG0419 ATPase involved in DNA repair 18 9 Op 3 . + CDS 17278 - 20475 3516 ## COG0553 Superfamily II DNA/RNA helicases, SNF2 family 19 9 Op 4 . + CDS 20525 - 21448 1054 ## EF2687 hypothetical protein + Prom 21490 - 21549 8.5 20 10 Op 1 . + CDS 21617 - 23788 2061 ## COG4886 Leucine-rich repeat (LRR) protein 21 10 Op 2 . + CDS 23825 - 24160 160 ## EF2685 cell wall surface anchor family protein 22 10 Op 3 . + CDS 24162 - 24944 999 ## EF2684 hypothetical protein 23 10 Op 4 . + CDS 24984 - 25706 1030 ## EF2683 hypothetical protein + Term 25773 - 25817 3.0 + Prom 25708 - 25767 3.1 24 11 Tu 1 . + CDS 25834 - 26859 1019 ## EF2682 hypothetical protein + Term 26866 - 26902 7.3 - Term 26854 - 26890 3.5 25 12 Tu 1 . - CDS 26896 - 27609 523 ## COG1011 Predicted hydrolase (HAD superfamily) - Prom 27741 - 27800 6.5 26 13 Tu 1 . + CDS 27937 - 29652 244 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 + Term 29658 - 29693 4.1 - Term 29636 - 29690 14.6 27 14 Tu 1 . - CDS 29696 - 30706 988 ## COG0180 Tryptophanyl-tRNA synthetase - Prom 30895 - 30954 10.7 + Prom 30881 - 30940 7.0 28 15 Tu 1 . + CDS 31066 - 31464 377 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family + Term 31478 - 31523 3.4 + Prom 31709 - 31768 5.1 29 16 Tu 1 3/0.108 + CDS 31807 - 32469 836 ## COG4862 Negative regulator of genetic competence, sporulation and motility + Term 32470 - 32517 5.2 + Prom 32474 - 32533 3.8 30 17 Op 1 7/0.000 + CDS 32558 - 33736 605 ## COG4469 Competence protein 31 17 Op 2 . + CDS 33784 - 35595 2294 ## COG1164 Oligoendopeptidase F + Term 35624 - 35687 21.3 + Prom 35705 - 35764 7.9 32 18 Tu 1 . + CDS 35786 - 36505 576 ## COG1396 Predicted transcriptional regulators - Term 36747 - 36783 2.2 33 19 Op 1 1/0.216 - CDS 36788 - 37447 705 ## COG2761 Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis 34 19 Op 2 . - CDS 37511 - 38089 691 ## COG4116 Uncharacterized protein conserved in bacteria - Prom 38113 - 38172 3.6 + Prom 38015 - 38074 6.5 35 20 Op 1 6/0.000 + CDS 38286 - 38960 751 ## COG2357 Uncharacterized protein conserved in bacteria 36 20 Op 2 7/0.000 + CDS 38973 - 39770 693 ## COG0061 Predicted sugar kinase 37 20 Op 3 1/0.216 + CDS 39778 - 40671 264 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit 38 20 Op 4 . + CDS 40702 - 42063 1730 ## COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain) - Term 42118 - 42164 1.1 39 21 Tu 1 . - CDS 42227 - 42856 858 ## COG3142 Uncharacterized protein involved in copper resistance + Prom 42897 - 42956 3.2 40 22 Tu 1 . + CDS 42986 - 43831 629 ## COG0500 SAM-dependent methyltransferases + Term 44028 - 44067 0.3 + Prom 43990 - 44049 11.6 41 23 Tu 1 . + CDS 44144 - 44650 610 ## COG0219 Predicted rRNA methylase (SpoU class) + Term 44669 - 44712 2.0 + Prom 44656 - 44715 4.8 42 24 Op 1 1/0.216 + CDS 44867 - 45511 729 ## COG0406 Fructose-2,6-bisphosphatase 43 24 Op 2 . + CDS 45538 - 48147 3006 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member + Term 48158 - 48202 13.2 - Term 48140 - 48196 13.1 44 25 Tu 1 . - CDS 48214 - 49173 825 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase - Prom 49196 - 49255 6.1 + Prom 49309 - 49368 5.2 45 26 Op 1 . + CDS 49436 - 49942 506 ## COG4708 Predicted membrane protein + Term 49998 - 50043 -0.4 + Prom 50078 - 50137 7.2 46 26 Op 2 . + CDS 50180 - 51385 1413 ## COG2348 Uncharacterized protein involved in methicillin resistance + Term 51394 - 51446 18.0 - Term 51381 - 51433 18.0 47 27 Op 1 3/0.108 - CDS 51441 - 52076 712 ## COG4684 Predicted membrane protein 48 27 Op 2 3/0.108 - CDS 52080 - 52634 567 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase 49 27 Op 3 . - CDS 52631 - 53404 875 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase 50 27 Op 4 . - CDS 53420 - 54412 1392 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases - Prom 54501 - 54560 5.5 + Prom 54540 - 54599 7.3 51 28 Op 1 4/0.054 + CDS 54676 - 55218 652 ## COG1396 Predicted transcriptional regulators 52 28 Op 2 30/0.000 + CDS 55244 - 56329 1228 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components 53 28 Op 3 36/0.000 + CDS 56348 - 57154 893 ## COG1176 ABC-type spermidine/putrescine transport system, permease component I 54 28 Op 4 25/0.000 + CDS 57154 - 57990 930 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 55 28 Op 5 . + CDS 57987 - 59060 1274 ## COG0687 Spermidine/putrescine-binding periplasmic protein + Term 59101 - 59141 0.1 - Term 59770 - 59819 9.4 56 29 Op 1 . - CDS 60032 - 60829 489 ## MPTP_0597 hypothetical protein 57 29 Op 2 . - CDS 60730 - 61797 611 ## LC705_01992 hypothetical protein - Prom 61856 - 61915 11.0 + Prom 62573 - 62632 9.3 58 30 Op 1 6/0.000 + CDS 62863 - 64155 1417 ## COG2610 H+/gluconate symporter and related permeases 59 30 Op 2 1/0.216 + CDS 64177 - 65325 1530 ## COG1929 Glycerate kinase + Term 65386 - 65454 12.2 + Prom 65334 - 65393 3.8 60 31 Tu 1 . + CDS 65467 - 66480 902 ## COG3835 Sugar diacid utilization regulator + Prom 66503 - 66562 8.4 61 32 Tu 1 . + CDS 66603 - 67505 1058 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase + Term 67523 - 67577 3.6 + Prom 67559 - 67618 4.8 62 33 Tu 1 . + CDS 67649 - 68359 763 ## COG3597 Uncharacterized protein/domain associated with GTPases + Term 68538 - 68574 4.1 - Term 68568 - 68610 8.1 63 34 Op 1 16/0.000 - CDS 68643 - 70352 2113 ## COG4176 ABC-type proline/glycine betaine transport system, permease component 64 34 Op 2 1/0.216 - CDS 70345 - 71535 1470 ## COG4175 ABC-type proline/glycine betaine transport system, ATPase component - Prom 71675 - 71734 12.4 - Term 71686 - 71727 3.6 65 35 Op 1 . - CDS 71736 - 72368 633 ## COG2188 Transcriptional regulators 66 35 Op 2 . - CDS 72383 - 74329 2078 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains + Prom 74448 - 74507 6.3 67 36 Tu 1 . + CDS 74543 - 75193 865 ## COG2344 AT-rich DNA-binding protein + Term 75200 - 75248 11.1 - Term 75187 - 75235 9.2 68 37 Op 1 . - CDS 75236 - 75889 721 ## COG1266 Predicted metal-dependent membrane protease 69 37 Op 2 . - CDS 75908 - 76084 212 ## EF2636 hypothetical protein - Prom 76106 - 76165 7.3 + Prom 76232 - 76291 6.2 70 38 Op 1 41/0.000 + CDS 76317 - 76601 402 ## COG0234 Co-chaperonin GroES (HSP10) 71 38 Op 2 . + CDS 76659 - 78284 1605 ## PROTEIN SUPPORTED gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 + Term 78306 - 78341 5.3 + Prom 78496 - 78555 12.6 72 39 Op 1 . + CDS 78587 - 79306 674 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 73 39 Op 2 . + CDS 79330 - 80040 785 ## EF2629 hypothetical protein 74 39 Op 3 . + CDS 80057 - 81604 1228 ## COG1705 Muramidase (flagellum-specific) + Term 81649 - 81711 27.1 + Prom 81683 - 81742 6.8 75 40 Op 1 . + CDS 81822 - 82232 259 ## COG2246 Predicted membrane protein 76 40 Op 2 5/0.000 + CDS 82310 - 83794 1696 ## COG1488 Nicotinic acid phosphoribosyltransferase 77 40 Op 3 . + CDS 83797 - 84624 1146 ## COG0171 NAD synthase + Term 84628 - 84672 9.0 + Prom 84735 - 84794 4.7 78 41 Op 1 . + CDS 84817 - 86622 2035 ## COG2217 Cation transport ATPase + Prom 86633 - 86692 2.9 79 41 Op 2 5/0.000 + CDS 86714 - 86998 405 ## COG3592 Uncharacterized conserved protein 80 41 Op 3 . + CDS 86988 - 87263 408 ## COG2388 Predicted acetyltransferase + Term 87279 - 87329 13.1 + Prom 87322 - 87381 4.9 81 42 Tu 1 . + CDS 87431 - 87667 374 ## COG1314 Preprotein translocase subunit SecG + Term 87697 - 87746 12.4 + Prom 87732 - 87791 5.5 82 43 Op 1 4/0.054 + CDS 87822 - 88586 812 ## COG1647 Esterase/lipase 83 43 Op 2 10/0.000 + CDS 88586 - 90955 1620 ## PROTEIN SUPPORTED gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 84 43 Op 3 . + CDS 90968 - 91432 647 ## COG0691 tmRNA-binding protein + Term 91570 - 91610 -0.3 + Prom 91440 - 91499 7.2 85 44 Op 1 40/0.000 + CDS 91735 - 92454 630 ## COG0356 F0F1-type ATP synthase, subunit a 86 44 Op 2 37/0.000 + CDS 92503 - 92724 427 ## COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K + Term 92735 - 92788 4.0 87 44 Op 3 38/0.000 + CDS 92862 - 93392 748 ## COG0711 F0F1-type ATP synthase, subunit b 88 44 Op 4 41/0.000 + CDS 93379 - 93921 719 ## COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) 89 44 Op 5 42/0.000 + CDS 93950 - 95506 2258 ## COG0056 F0F1-type ATP synthase, alpha subunit 90 44 Op 6 42/0.000 + CDS 95522 - 96430 1108 ## COG0224 F0F1-type ATP synthase, gamma subunit + Term 96439 - 96495 8.1 91 44 Op 7 42/0.000 + CDS 96512 - 97918 1952 ## COG0055 F0F1-type ATP synthase, beta subunit 92 44 Op 8 . + CDS 97935 - 98354 612 ## COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) + Term 98359 - 98387 -0.0 + Prom 98447 - 98506 6.1 93 45 Tu 1 . + CDS 98543 - 98779 149 ## EF2606 hypothetical protein + Prom 98781 - 98840 6.2 94 46 Op 1 . + CDS 98882 - 100183 1751 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase 95 46 Op 2 . + CDS 100197 - 100373 299 ## EF2604 hypothetical protein + Term 100387 - 100436 8.5 + Prom 100413 - 100472 9.5 96 47 Op 1 . + CDS 100501 - 100869 474 ## COG3731 Phosphotransferase system sorbitol-specific component IIA 97 47 Op 2 . + CDS 100874 - 102043 1438 ## COG0628 Predicted permease + Term 102049 - 102091 9.1 - Term 102036 - 102078 9.1 98 48 Tu 1 . - CDS 102105 - 102731 933 ## COG1182 Acyl carrier protein phosphodiesterase - Prom 102852 - 102911 8.7 + Prom 102809 - 102868 16.2 99 49 Op 1 7/0.000 + CDS 103033 - 103875 885 ## COG3711 Transcriptional antiterminator + Prom 103939 - 103998 1.9 100 49 Op 2 8/0.000 + CDS 104038 - 105918 2269 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 101 49 Op 3 . + CDS 105943 - 107388 1722 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase + Term 107462 - 107511 10.1 + Prom 107405 - 107464 6.3 102 50 Tu 1 . + CDS 107570 - 107965 535 ## COG0194 Guanylate kinase + Term 108143 - 108201 9.1 + Prom 108186 - 108245 9.3 103 51 Op 1 . + CDS 108286 - 108963 809 ## COG1309 Transcriptional regulator 104 51 Op 2 35/0.000 + CDS 108984 - 110711 185 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 105 51 Op 3 . + CDS 110708 - 112576 171 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 + Term 112605 - 112667 17.5 + Prom 112635 - 112694 7.7 106 52 Tu 1 . + CDS 112763 - 113608 974 ## COG2514 Predicted ring-cleavage extradiol dioxygenase + Term 113657 - 113703 2.3 + Prom 113647 - 113706 4.0 107 53 Op 1 . + CDS 113738 - 114781 974 ## COG1680 Beta-lactamase class C and other penicillin binding proteins 108 53 Op 2 . + CDS 114823 - 115794 1222 ## COG1482 Phosphomannose isomerase + Term 115801 - 115842 8.1 - Term 115788 - 115828 4.1 109 54 Op 1 . - CDS 115850 - 116395 381 ## EF2588 hypothetical protein 110 54 Op 2 . - CDS 116398 - 117372 815 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase - Prom 117516 - 117575 5.6 - Term 117558 - 117606 7.6 111 55 Op 1 10/0.000 - CDS 117609 - 118298 981 ## COG3442 Predicted glutamine amidotransferase 112 55 Op 2 . - CDS 118291 - 119643 1744 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase - Prom 119696 - 119755 11.5 - Term 119791 - 119837 8.0 113 56 Tu 1 . - CDS 119849 - 120487 628 ## COG2964 Uncharacterized protein conserved in bacteria - Prom 120629 - 120688 5.8 + Prom 120668 - 120727 9.9 114 57 Op 1 1/0.216 + CDS 120891 - 122225 1696 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 115 57 Op 2 1/0.216 + CDS 122256 - 125261 3071 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases 116 57 Op 3 . + CDS 125291 - 126664 1076 ## COG0044 Dihydroorotase and related cyclic amidohydrolases 117 57 Op 4 4/0.054 + CDS 126688 - 127881 1177 ## COG1171 Threonine dehydratase 118 57 Op 5 . + CDS 127887 - 129197 1599 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 119 57 Op 6 8/0.000 + CDS 129236 - 130429 1576 ## COG0078 Ornithine carbamoyltransferase + Prom 130591 - 130650 2.5 120 57 Op 7 . + CDS 130670 - 131614 1146 ## COG0549 Carbamate kinase 121 57 Op 8 . + CDS 131629 - 132009 446 ## COG0251 Putative translation initiation inhibitor, yjgF family + Term 132036 - 132082 -0.5 + Prom 132015 - 132074 6.5 122 58 Op 1 . + CDS 132103 - 133422 404 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 133437 - 133476 5.3 123 58 Op 2 . + CDS 133516 - 133875 382 ## COG2005 N-terminal domain of molybdenum-binding protein 124 58 Op 3 6/0.000 + CDS 133926 - 134879 834 ## COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family + Term 134909 - 134952 -0.5 + Prom 134901 - 134960 6.0 125 58 Op 4 1/0.216 + CDS 135000 - 137573 2537 ## COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs 126 58 Op 5 . + CDS 137587 - 138168 696 ## COG2068 Uncharacterized MobA-related protein 127 58 Op 6 . + CDS 138182 - 139330 1250 ## COG0520 Selenocysteine lyase 128 58 Op 7 . + CDS 139346 - 140368 976 ## COG0709 Selenophosphate synthase 129 58 Op 8 . + CDS 140384 - 140971 719 ## EF2566 hypothetical protein 130 58 Op 9 . + CDS 140992 - 141249 145 ## EF2565 hypothetical protein 131 58 Op 10 . + CDS 141237 - 141992 458 ## EF2564 hypothetical protein 132 58 Op 11 . + CDS 141956 - 142786 868 ## COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family + Term 142970 - 143007 0.9 + Prom 142896 - 142955 10.4 133 59 Op 1 . + CDS 143028 - 143486 646 ## COG0716 Flavodoxins 134 59 Op 2 5/0.000 + CDS 143542 - 144381 1111 ## COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases 135 59 Op 3 . + CDS 144374 - 145792 1530 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases 136 59 Op 4 . + CDS 145813 - 149346 4062 ## COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit + Term 149352 - 149389 6.4 - Term 149338 - 149377 6.0 137 60 Tu 1 . - CDS 149383 - 150798 1131 ## COG0168 Trk-type K+ transport systems, membrane components + Prom 151050 - 151109 7.3 138 61 Tu 1 . + CDS 151168 - 152685 2231 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Term 152699 - 152746 10.3 + Prom 152721 - 152780 6.0 139 62 Op 1 3/0.108 + CDS 152911 - 153495 576 ## COG1435 Thymidine kinase 140 62 Op 2 32/0.000 + CDS 153507 - 154580 1399 ## COG0216 Protein chain release factor A 141 62 Op 3 10/0.000 + CDS 154573 - 155406 235 ## PROTEIN SUPPORTED gi|169796031|ref|YP_001713824.1| putative adenine-specific methylase 142 62 Op 4 1/0.216 + CDS 155450 - 156472 1268 ## COG0009 Putative translation factor (SUA5) 143 62 Op 5 5/0.000 + CDS 156548 - 157786 1593 ## COG0112 Glycine/serine hydroxymethyltransferase + Term 157832 - 157883 6.3 + Prom 157833 - 157892 6.8 144 62 Op 6 . + CDS 157918 - 158547 927 ## COG0035 Uracil phosphoribosyltransferase + Term 158558 - 158601 7.1 + Prom 158573 - 158632 9.8 145 63 Tu 1 . + CDS 158653 - 158925 316 ## EF2548 hypothetical protein + Term 159074 - 159111 1.2 146 64 Tu 1 . - CDS 158999 - 159235 221 ## EF2547 hypothetical protein - Prom 159411 - 159470 74.3 + TRNA 159394 - 159466 75.8 # Thr CGT 0 0 - Term 159463 - 159510 14.1 147 65 Op 1 9/0.000 - CDS 159516 - 159842 319 ## COG4392 Predicted membrane protein 148 65 Op 2 . - CDS 159829 - 160536 817 ## COG1296 Predicted branched-chain amino acid permease (azaleucine resistance) 149 65 Op 3 . - CDS 160533 - 160634 95 ## - Prom 160740 - 160799 9.8 + Prom 160626 - 160685 8.7 150 66 Op 1 . + CDS 160750 - 161301 521 ## COG1396 Predicted transcriptional regulators + Prom 161322 - 161381 4.6 151 66 Op 2 . + CDS 161414 - 162745 1198 ## EF2507 hypothetical protein + Term 162768 - 162820 8.0 + Prom 162758 - 162817 10.3 152 67 Tu 1 . + CDS 162943 - 167226 4518 ## COG4932 Predicted outer membrane protein + Prom 167332 - 167391 3.5 153 68 Op 1 . + CDS 167425 - 168126 513 ## EF2504 hypothetical protein 154 68 Op 2 . + CDS 168127 - 169563 1300 ## EF2503 hypothetical protein + Term 169567 - 169607 6.1 + Prom 169720 - 169779 7.1 155 69 Op 1 1/0.216 + CDS 169807 - 170994 1276 ## COG0772 Bacterial cell division membrane protein 156 69 Op 2 4/0.054 + CDS 171023 - 171382 420 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family 157 69 Op 3 . + CDS 171379 - 171702 529 ## COG0509 Glycine cleavage system H protein (lipoate-binding) + Prom 171786 - 171845 3.6 158 69 Op 4 . + CDS 171876 - 171956 76 ## + Term 171984 - 172044 14.6 + Prom 172031 - 172090 8.0 159 70 Op 1 32/0.000 + CDS 172117 - 173154 1420 ## COG1135 ABC-type metal ion transport system, ATPase component 160 70 Op 2 22/0.000 + CDS 173147 - 173833 839 ## COG2011 ABC-type metal ion transport system, permease component 161 70 Op 3 . + CDS 173848 - 174666 1118 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen + Prom 174925 - 174984 9.0 162 71 Op 1 32/0.000 + CDS 175013 - 175828 721 ## COG0020 Undecaprenyl pyrophosphate synthase 163 71 Op 2 . + CDS 175825 - 176625 936 ## COG0575 CDP-diglyceride synthetase + Term 176663 - 176711 11.3 + Prom 177269 - 177328 10.7 164 72 Op 1 . + CDS 177389 - 178039 683 ## COG2102 Predicted ATPases of PP-loop superfamily + Prom 178041 - 178100 4.8 165 72 Op 2 . + CDS 178127 - 178354 405 ## EF2483 hypothetical protein + Term 178355 - 178407 11.2 + Prom 178381 - 178440 6.4 166 73 Tu 1 . + CDS 178502 - 179233 599 ## COG0546 Predicted phosphatases + Term 179424 - 179459 0.2 - Term 179207 - 179248 6.2 167 74 Op 1 . - CDS 179257 - 179550 171 ## gi|255972054|ref|ZP_05422640.1| predicted protein 168 74 Op 2 . - CDS 179462 - 180271 928 ## COG1512 Beta-propeller domains of methanol dehydrogenase type 169 74 Op 3 . - CDS 180268 - 181413 896 ## EF2478 hypothetical protein - Term 181454 - 181496 5.3 170 75 Tu 1 . - CDS 181517 - 182749 1319 ## COG4260 Putative virion core protein (lumpy skin disease virus) - Prom 182869 - 182928 9.9 + Prom 182871 - 182930 4.5 171 76 Tu 1 . + CDS 182958 - 185000 2312 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 + Term 185016 - 185062 8.7 + Prom 185025 - 185084 8.7 172 77 Op 1 20/0.000 + CDS 185112 - 185831 289 ## PROTEIN SUPPORTED gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase 173 77 Op 2 2/0.162 + CDS 185803 - 186357 291 ## PROTEIN SUPPORTED gi|58336726|ref|YP_193311.1| ribosomal protein ala-acetyltransferase 174 77 Op 3 9/0.000 + CDS 186365 - 186829 190 ## PROTEIN SUPPORTED gi|119946836|ref|YP_944516.1| ribosomal-protein-alanine acetyltransferase 175 77 Op 4 . + CDS 186826 - 187872 716 ## PROTEIN SUPPORTED gi|229232313|ref|ZP_04356740.1| (SSU ribosomal protein S18P)-alanine acetyltransferase + Term 188109 - 188160 13.1 + Prom 188110 - 188169 10.6 176 78 Op 1 . + CDS 188190 - 189881 2229 ## COG0018 Arginyl-tRNA synthetase + Prom 189940 - 189999 5.6 177 78 Op 2 . + CDS 190037 - 190537 595 ## COG1418 Predicted HD superfamily hydrolase + Term 190645 - 190700 -0.9 - Term 190374 - 190411 4.0 178 79 Tu 1 . - CDS 190573 - 190866 311 ## EF2469 Cro/CI family transcriptional regulator + Prom 190985 - 191044 9.6 179 80 Op 1 . + CDS 191078 - 191296 158 ## EF2467 hypothetical protein 180 80 Op 2 1/0.216 + CDS 191339 - 193387 2304 ## COG4932 Predicted outer membrane protein 181 80 Op 3 . + CDS 193445 - 195190 1649 ## COG4932 Predicted outer membrane protein 182 80 Op 4 . + CDS 195219 - 195362 198 ## EF2465 hypothetical protein 183 80 Op 5 2/0.162 + CDS 195359 - 195820 462 ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis 184 80 Op 6 . + CDS 195892 - 196608 484 ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis + Term 196717 - 196764 8.2 + Prom 196719 - 196778 4.3 185 81 Op 1 . + CDS 196805 - 198070 1185 ## COG0038 Chloride channel protein EriC 186 81 Op 2 2/0.162 + CDS 198120 - 198398 442 ## COG4476 Uncharacterized protein conserved in bacteria 187 81 Op 3 1/0.216 + CDS 198399 - 199181 1073 ## COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family + Term 199187 - 199228 3.4 + Prom 199289 - 199348 6.4 188 82 Tu 1 . + CDS 199402 - 201237 2249 ## COG1217 Predicted membrane GTPase involved in stress response + Term 201262 - 201307 1.4 + Prom 201295 - 201354 9.4 189 83 Tu 1 . + CDS 201555 - 203324 2046 ## COG0514 Superfamily II DNA helicase + Term 203448 - 203503 9.5 + Prom 203467 - 203526 10.0 190 84 Op 1 3/0.108 + CDS 203551 - 203856 410 ## COG4838 Uncharacterized protein conserved in bacteria 191 84 Op 2 4/0.054 + CDS 203860 - 205068 1277 ## COG0772 Bacterial cell division membrane protein 192 84 Op 3 . + CDS 205101 - 208529 4119 ## COG1038 Pyruvate carboxylase 193 84 Op 4 2/0.162 + CDS 208546 - 209670 977 ## COG2340 Uncharacterized protein with SCP/PR1 domains 194 84 Op 5 3/0.108 + CDS 209667 - 210101 222 ## PROTEIN SUPPORTED gi|163764796|ref|ZP_02171849.1| ribosomal protein S17 195 84 Op 6 2/0.162 + CDS 210091 - 210441 476 ## COG4471 Uncharacterized protein conserved in bacteria + Term 210443 - 210506 16.1 + Prom 210450 - 210509 7.3 196 85 Op 1 14/0.000 + CDS 210540 - 211094 649 ## COG0742 N6-adenine-specific methylase 197 85 Op 2 4/0.054 + CDS 211096 - 211587 334 ## PROTEIN SUPPORTED gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 198 85 Op 3 . + CDS 211592 - 212644 471 ## PROTEIN SUPPORTED gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 + Term 212647 - 212705 19.5 + Prom 212654 - 212713 5.8 199 86 Tu 1 4/0.054 + CDS 212740 - 213384 748 ## COG1555 DNA uptake protein and related DNA-binding proteins + Prom 213387 - 213446 4.7 200 87 Tu 1 . + CDS 213507 - 214010 497 ## COG2131 Deoxycytidylate deaminase + Term 214020 - 214062 3.1 + Prom 214087 - 214146 3.9 201 88 Op 1 4/0.054 + CDS 214333 - 216309 1350 ## COG2333 Predicted hydrolase (metallo-beta-lactamase superfamily) 202 88 Op 2 . + CDS 216367 - 217395 1162 ## COG1466 DNA polymerase III, delta subunit + Term 217396 - 217455 17.1 - Term 217384 - 217443 17.1 203 89 Tu 1 . - CDS 217447 - 218388 1303 ## COG1893 Ketopantoate reductase - Prom 218422 - 218481 6.7 + Prom 218429 - 218488 4.2 204 90 Tu 1 . + CDS 218578 - 219114 372 ## COG1607 Acyl-CoA hydrolase + Term 219120 - 219164 6.2 - Term 219153 - 219195 4.5 205 91 Tu 1 . - CDS 219201 - 219515 509 ## PROTEIN SUPPORTED gi|227519840|ref|ZP_03949889.1| ribosomal protein S20 - Prom 219590 - 219649 5.0 + Prom 219577 - 219636 5.5 206 92 Op 1 21/0.000 + CDS 219663 - 220697 975 ## COG0306 Phosphate/sulphate permeases 207 92 Op 2 . + CDS 220710 - 221333 837 ## COG1392 Phosphate transport regulator (distant homolog of PhoU) 208 92 Op 3 . + CDS 221352 - 222137 735 ## COG3394 Uncharacterized protein conserved in bacteria + Term 222140 - 222179 9.3 - Term 222121 - 222172 16.2 209 93 Tu 1 . - CDS 222176 - 223042 930 ## COG1968 Uncharacterized bacitracin resistance protein - Prom 223084 - 223143 9.3 + Prom 223048 - 223107 8.0 210 94 Tu 1 . + CDS 223188 - 223682 694 ## COG2190 Phosphotransferase system IIA components + Term 223732 - 223785 9.2 + Prom 223843 - 223902 11.6 211 95 Op 1 2/0.162 + CDS 223980 - 225089 1105 ## COG3589 Uncharacterized conserved protein 212 95 Op 2 9/0.000 + CDS 225064 - 225954 1241 ## COG2103 Predicted sugar phosphate isomerase 213 95 Op 3 3/0.108 + CDS 225977 - 227431 1898 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Term 227438 - 227482 5.1 + Prom 227433 - 227492 5.1 214 95 Op 4 . + CDS 227518 - 228366 1112 ## COG1737 Transcriptional regulators + Term 228374 - 228424 17.1 - Term 228355 - 228418 19.1 215 96 Op 1 1/0.216 - CDS 228422 - 229126 981 ## COG0406 Fructose-2,6-bisphosphatase 216 96 Op 2 . - CDS 229167 - 229793 779 ## COG0491 Zn-dependent hydrolases, including glyoxylases - Prom 229822 - 229881 7.2 + Prom 229906 - 229965 12.4 217 97 Op 1 4/0.054 + CDS 230013 - 231398 1670 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 218 97 Op 2 1/0.216 + CDS 231402 - 232733 357 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 232813 - 232854 4.0 + Prom 232736 - 232795 9.1 219 98 Tu 1 . + CDS 232875 - 233852 1232 ## COG0516 IMP dehydrogenase/GMP reductase + Term 233877 - 233936 17.7 + Prom 233907 - 233966 5.9 220 99 Op 1 . + CDS 234014 - 234346 214 ## PROTEIN SUPPORTED gi|18309686|ref|NP_561620.1| 30S ribosomal protein 221 99 Op 2 . + CDS 234343 - 235371 1023 ## EF2427 hypothetical protein + Term 235396 - 235448 13.1 + Prom 235424 - 235483 2.5 222 100 Tu 1 . + CDS 235506 - 236957 1470 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs + Prom 236988 - 237047 9.5 223 101 Op 1 . + CDS 237078 - 238802 2336 ## COG1109 Phosphomannomutase + Term 238844 - 238897 14.1 224 101 Op 2 . + CDS 238909 - 239691 1022 ## COG0345 Pyrroline-5-carboxylate reductase + Term 239697 - 239750 9.0 + Prom 239750 - 239809 3.6 225 102 Op 1 . + CDS 239829 - 240116 390 ## COG0640 Predicted transcriptional regulators 226 102 Op 2 11/0.000 + CDS 240168 - 241460 1455 ## COG0460 Homoserine dehydrogenase 227 102 Op 3 19/0.000 + CDS 241463 - 242518 1519 ## COG0498 Threonine synthase 228 102 Op 4 . + CDS 242515 - 243378 937 ## COG0083 Homoserine kinase + Term 243385 - 243426 9.2 - Term 243373 - 243414 9.2 229 103 Tu 1 . - CDS 243421 - 244251 749 ## COG1806 Uncharacterized protein conserved in bacteria - Prom 244307 - 244366 6.5 + Prom 244266 - 244325 5.4 230 104 Tu 1 . + CDS 244382 - 244816 436 ## COG0735 Fe2+/Zn2+ uptake regulation proteins + Prom 244833 - 244892 3.6 231 105 Op 1 9/0.000 + CDS 244919 - 245158 400 ## PROTEIN SUPPORTED gi|227519866|ref|ZP_03949915.1| 30S ribosomal protein S21 232 105 Op 2 1/0.216 + CDS 245184 - 245633 420 ## PROTEIN SUPPORTED gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 + Term 245644 - 245685 9.0 + Prom 245727 - 245786 6.0 233 106 Op 1 4/0.054 + CDS 245816 - 246790 1223 ## COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase 234 106 Op 2 7/0.000 + CDS 246819 - 249017 989 ## PROTEIN SUPPORTED gi|163762592|ref|ZP_02169656.1| ribosomal protein S21 235 106 Op 3 11/0.000 + CDS 249017 - 249496 671 ## COG0319 Predicted metal-dependent hydrolase 236 106 Op 4 3/0.108 + CDS 249480 - 249881 418 ## COG0818 Diacylglycerol kinase 237 106 Op 5 16/0.000 + CDS 249895 - 250797 1288 ## COG1159 GTPase + Term 250802 - 250862 4.1 238 106 Op 6 3/0.108 + CDS 250880 - 251668 786 ## COG1381 Recombinational DNA repair protein (RecF pathway) + Term 251904 - 251946 9.0 + Prom 252201 - 252260 6.4 239 107 Op 1 19/0.000 + CDS 252314 - 253222 1171 ## COG0752 Glycyl-tRNA synthetase, alpha subunit 240 107 Op 2 . + CDS 253224 - 255308 2874 ## COG0751 Glycyl-tRNA synthetase, beta subunit 241 107 Op 3 . + CDS 255348 - 255539 274 ## gi|227553937|ref|ZP_03983984.1| conserved hypothetical protein + Term 255545 - 255579 4.5 - Term 255533 - 255567 3.5 242 108 Tu 1 . - CDS 255573 - 256505 1177 ## COG0706 Preprotein translocase subunit YidC - Prom 256537 - 256596 6.5 - Term 256548 - 256590 2.2 243 109 Tu 1 . - CDS 256672 - 256947 375 ## COG1254 Acylphosphatases - Prom 257069 - 257128 6.4 244 110 Op 1 . + CDS 257054 - 257830 206 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 245 110 Op 2 . + CDS 257850 - 258287 534 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 258348 - 258385 -1.0 + Prom 258289 - 258348 5.3 246 111 Op 1 38/0.000 + CDS 258471 - 259256 1336 ## PROTEIN SUPPORTED gi|29376895|ref|NP_816049.1| 30S ribosomal protein S2 + Term 259270 - 259331 2.4 + Prom 259278 - 259337 2.3 247 111 Op 2 24/0.000 + CDS 259362 - 260243 582 ## PROTEIN SUPPORTED gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts + Term 260362 - 260404 3.1 + Prom 260330 - 260389 3.5 248 111 Op 3 33/0.000 + CDS 260504 - 261226 1013 ## COG0528 Uridylate kinase 249 111 Op 4 . + CDS 261230 - 261787 957 ## COG0233 Ribosome recycling factor + Term 261812 - 261852 3.4 + Prom 261898 - 261957 11.9 250 112 Op 1 41/0.000 + CDS 262157 - 262927 194 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 251 112 Op 2 24/0.000 + CDS 262942 - 264228 1621 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 252 112 Op 3 19/0.000 + CDS 264225 - 265460 1446 ## COG0520 Selenocysteine lyase 253 112 Op 4 6/0.000 + CDS 265447 - 265914 690 ## COG0822 NifU homolog involved in Fe-S cluster formation 254 112 Op 5 . + CDS 265933 - 267327 1559 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component + Term 267378 - 267418 7.5 + Prom 267343 - 267402 7.2 255 113 Tu 1 . + CDS 267462 - 267614 74 ## gi|315155325|gb|EFT99341.1| hypothetical protein HMPREF9503_01825 + Term 267849 - 267888 2.7 + Prom 268674 - 268733 9.9 256 114 Op 1 . + CDS 268770 - 269606 350 ## gi|255972142|ref|ZP_05422728.1| predicted protein 257 114 Op 2 . + CDS 269665 - 270735 768 ## Sph21_4937 hypothetical protein 258 114 Op 3 . + CDS 270763 - 270846 86 ## + Prom 270993 - 271052 6.2 259 115 Tu 1 . + CDS 271143 - 271655 386 ## PSEEN4664 hypothetical protein + Term 271772 - 271807 -0.8 + Prom 272156 - 272215 6.0 260 116 Op 1 7/0.000 + CDS 272375 - 273643 1532 ## COG0750 Predicted membrane-associated Zn-dependent proteases 1 261 116 Op 2 . + CDS 273715 - 275433 2359 ## COG0442 Prolyl-tRNA synthetase + Term 275460 - 275512 12.3 262 117 Op 1 . + CDS 275949 - 276494 718 ## gi|229549444|ref|ZP_04438169.1| conserved hypothetical protein 263 117 Op 2 . + CDS 276508 - 277821 1276 ## SSA_1756 hypothetical protein 264 117 Op 3 . + CDS 277835 - 278125 375 ## gi|315146011|gb|EFT90027.1| conserved hypothetical protein 265 117 Op 4 . + CDS 278129 - 278464 275 ## gi|315032874|gb|EFT44806.1| hypothetical protein HMPREF9500_01227 + Term 278534 - 278564 1.3 + Prom 278564 - 278623 8.0 266 118 Tu 1 . + CDS 278708 - 283063 5125 ## COG2176 DNA polymerase III, alpha subunit (gram-positive type) + Term 283085 - 283124 5.0 + Prom 283178 - 283237 9.7 267 119 Op 1 . + CDS 283275 - 284732 1589 ## COG0531 Amino acid transporters + Term 284777 - 284827 12.0 + Prom 284790 - 284849 4.2 268 119 Op 2 . + CDS 284951 - 286327 1139 ## EF2376 hypothetical protein + Term 286380 - 286429 14.1 + Prom 286443 - 286502 5.3 269 120 Tu 1 2/0.162 + CDS 286526 - 289297 2596 ## COG1199 Rad3-related DNA helicases + Prom 289301 - 289360 5.7 270 121 Op 1 5/0.000 + CDS 289385 - 289891 569 ## COG5353 Uncharacterized protein conserved in bacteria 271 121 Op 2 5/0.000 + CDS 289930 - 291129 1295 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 272 121 Op 3 . + CDS 291164 - 292498 1585 ## COG0017 Aspartyl/asparaginyl-tRNA synthetases + Term 292507 - 292560 13.6 - Term 292502 - 292539 7.1 273 122 Tu 1 . - CDS 292545 - 293504 1040 ## COG0673 Predicted dehydrogenases and related proteins - Prom 293547 - 293606 9.3 + Prom 293509 - 293568 7.7 274 123 Op 1 . + CDS 293677 - 294195 700 ## EF2369 hypothetical protein 275 123 Op 2 . + CDS 294216 - 294434 219 ## + Prom 294455 - 294514 1.9 276 124 Op 1 . + CDS 294534 - 295175 840 ## COG1705 Muramidase (flagellum-specific) 277 124 Op 2 . + CDS 295195 - 295881 1071 ## EF2366 hypothetical protein + Term 295886 - 295925 8.3 + Prom 296130 - 296189 5.3 278 125 Op 1 7/0.000 + CDS 296280 - 296861 845 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 279 125 Op 2 . + CDS 296864 - 298183 432 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 298202 - 298235 -0.9 + Prom 298375 - 298434 6.3 280 126 Op 1 3/0.108 + CDS 298511 - 299626 1297 ## COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) 281 126 Op 2 . + CDS 299669 - 300964 1751 ## COG0015 Adenylosuccinate lyase + Term 300968 - 301013 9.9 + Prom 301044 - 301103 8.9 282 127 Tu 1 . + CDS 301148 - 301519 421 ## COG2259 Predicted membrane protein + Term 301572 - 301613 3.3 + Prom 301702 - 301761 9.0 283 128 Tu 1 . + CDS 301790 - 304396 1614 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 304402 - 304435 5.4 - Term 304380 - 304433 13.4 284 129 Op 1 . - CDS 304434 - 304913 547 ## COG3613 Nucleoside 2-deoxyribosyltransferase 285 129 Op 2 . - CDS 304937 - 306157 1259 ## COG4552 Predicted acetyltransferase involved in intracellular survival and related acetyltransferases - Prom 306304 - 306363 6.8 + Prom 306227 - 306286 7.0 286 130 Tu 1 . + CDS 306404 - 308239 2084 ## COG0481 Membrane GTPase LepA + Term 308252 - 308287 4.2 + Prom 308276 - 308335 12.6 287 131 Op 1 8/0.000 + CDS 308430 - 309446 865 ## COG1879 ABC-type sugar transport system, periplasmic component + Term 309449 - 309496 5.1 + Prom 309511 - 309570 7.4 288 131 Op 2 8/0.000 + CDS 309604 - 310638 893 ## COG0524 Sugar kinases, ribokinase family 289 131 Op 3 1/0.216 + CDS 310649 - 312565 1498 ## COG3962 Acetolactate synthase 290 131 Op 4 5/0.000 + CDS 312604 - 313443 802 ## COG3718 Uncharacterized enzyme involved in inositol metabolism 291 131 Op 5 . + CDS 313483 - 314940 1334 ## COG1012 NAD-dependent aldehyde dehydrogenases + Term 314946 - 314987 8.0 + Prom 315028 - 315087 9.2 292 132 Op 1 9/0.000 + CDS 315114 - 316121 899 ## COG0673 Predicted dehydrogenases and related proteins 293 132 Op 2 16/0.000 + CDS 316145 - 317164 1062 ## COG0673 Predicted dehydrogenases and related proteins 294 132 Op 3 . + CDS 317186 - 318076 1062 ## COG1082 Sugar phosphate isomerases/epimerases 295 132 Op 4 . + CDS 318100 - 319695 1392 ## COG4146 Predicted symporter 296 132 Op 5 . + CDS 319723 - 320028 393 ## gi|315159142|gb|EFU03159.1| PTS system, Lactose/Cellobiose specific IIB subunit + Term 320037 - 320086 9.7 + Prom 320143 - 320202 8.3 297 133 Tu 1 . + CDS 320231 - 321064 901 ## EF2239 hypothetical protein + Term 321069 - 321112 6.3 - Term 321057 - 321100 2.5 298 134 Tu 1 . - CDS 321105 - 322166 1076 ## COG1609 Transcriptional regulators - Prom 322186 - 322245 9.2 299 135 Op 1 . + CDS 322342 - 322728 319 ## EF2237 putative lipoprotein 300 135 Op 2 . + CDS 322709 - 324508 1901 ## COG4289 Uncharacterized protein conserved in bacteria 301 135 Op 3 . + CDS 324524 - 325666 1260 ## EF2235 glucuronyl hydrolase, putative 302 135 Op 4 35/0.000 + CDS 325716 - 326993 1666 ## COG1653 ABC-type sugar transport system, periplasmic component + Term 327035 - 327084 -0.0 + Prom 327003 - 327062 7.1 303 135 Op 5 38/0.000 + CDS 327144 - 328046 648 ## COG1175 ABC-type sugar transport systems, permease components 304 135 Op 6 . + CDS 328058 - 328936 949 ## COG0395 ABC-type sugar transport system, permease component 305 135 Op 7 . + CDS 328949 - 329620 646 ## EF2231 hypothetical protein + Term 329632 - 329690 6.3 + Prom 329630 - 329689 4.0 306 136 Op 1 . + CDS 329721 - 330689 931 ## EF2230 hypothetical protein 307 136 Op 2 . + CDS 330700 - 334479 4078 ## EF2229 hypothetical protein + Term 334489 - 334555 12.7 + Prom 334553 - 334612 8.2 308 137 Tu 1 . + CDS 334641 - 335645 1522 ## COG0180 Tryptophanyl-tRNA synthetase + Term 335655 - 335707 13.3 - Term 335643 - 335695 9.5 309 138 Op 1 35/0.000 - CDS 335699 - 337477 207 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 310 138 Op 2 . - CDS 337530 - 339257 195 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 - Prom 339297 - 339356 4.2 + Prom 339177 - 339236 3.0 311 139 Tu 1 . + CDS 339372 - 340139 921 ## EF2225 MerR family transcriptional regulator Predicted protein(s) >gi|307679028|gb|GL456769.1| GENE 1 37 - 1407 1489 456 aa, chain - ## HITS:1 COG:lin1815 KEGG:ns NR:ns ## COG: lin1815 COG2265 # Protein_GI_number: 16800882 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Listeria innocua # 1 456 1 457 457 525 56.0 1e-149 MTQQLVKKGQQISLKIKRLGINGEGIGYYKKLIIFVPGALPKEEVTATITNVTPKFAEGT LQSVKKAAKDRVVPPCPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYEL RKTIGMENPWNYRNKAQFQLRQIDGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLV DLLNNFQLPIYDERKNSGIFRTLMVRVGIQTGEVQVVFITQSQKFPQKEKMVRAINEQLP EVVSIMQNVQNKKTSLVMGDDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYN EGIKALDLQPNETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNT HYAVGTAEDLLPKWFKEGFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLA RDLVQLAKVYQVDYLQSVDMFPQTARCEVVVKLTRK >gi|307679028|gb|GL456769.1| GENE 2 1539 - 2339 849 266 aa, chain + ## HITS:1 COG:BS_yfhG KEGG:ns NR:ns ## COG: BS_yfhG COG2137 # Protein_GI_number: 16077919 # Func_class: R General function prediction only # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 261 1 263 264 132 34.0 6e-31 MTTITRISKDKGEFYLLWLSSGEKLRVSEDILVRQRLLKGQELSDTLIEEIKKASSYDVG LQMAMNYLSYQLRSKKEIFTYLKEKEIVPEDRVKIVQRLEELRLLDDAIFSESYVRTAMR TSDKGPRNVAQQLKQKGISEEDIQHGLTFYTLDEQLNVATATAEKAMKRYRTKSFKDALQ KTRLHLMQKGFTNEIIDLALESLAFEKDEEQEQQALNKEGERLWRANQRFDFSKKVQKVK QSLFQKGFDYDLIQQFISEKEVEHDE >gi|307679028|gb|GL456769.1| GENE 3 2329 - 3513 1222 394 aa, chain + ## HITS:1 COG:L0296 KEGG:ns NR:ns ## COG: L0296 COG1194 # Protein_GI_number: 15672823 # Func_class: L Replication, recombination and repair # Function: A/G-specific DNA glycosylase # Organism: Lactococcus lactis # 10 393 3 382 387 360 48.0 2e-99 MTNKEPWEAWSPAKVSSFQEDFLAWYEREKRNLPWRANTDAYRIWISEIMLQQTRVDTVI DYFYRFMEWFPTIQDLAEAPDDKLLKAWEGLGYYSRARNLKVAAQQIVSEFGGKMPDTIE DIRSLKGIGPYTAGAIGSIAFNLPEPAIDGNVMRVVSRLFEIDADIAKASSRKVFEAAML KIIDRERPGDFNQALMDLGSAVCTPTSPKCESCPLQQYCAAYQADKMTAYPVKSKKVKPK DVYYVGTIIENKKQEFLLEQRPETGLLANMWLFPIEEISKKQFQQLQKLAQPVETEKQLT LELEPVTEPLVAEEPVNFFTDYETVVWQKRALGEVVHIFSHLKWHILVFYGRNTGELATL ESQRWVAAQQFSDYVFPKPQQKMVELFKKEHEKK >gi|307679028|gb|GL456769.1| GENE 4 3694 - 4818 1113 374 aa, chain + ## HITS:1 COG:lin2662 KEGG:ns NR:ns ## COG: lin2662 COG1316 # Protein_GI_number: 16801723 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 3 309 17 333 349 156 33.0 8e-38 MSRKRKISLISLVIILVFVTVGSAYFAVAGSYLKKTIDKGYVPIKNDYNEAQNKDSQSFL IMGLDNTIERKLGTTRTDAMMVITVNNKTKKITYLSLPRDSFVQIDAKNYQGMQRIEAAY TYDGPTASVNTVEKLLNIPINHYVVFNFLSFIKLIDAVGGIDVNVKQAFDGVTKDGPGSI HFDAGKQHLDGTKALSYARERHSDNDIMRGFRQQEIIQAVEDKLKSGQSIMKIMDIIDSL NGNIQTDVDSNELTHLVKEGLTWTNYDKQQLSFDWRTFSNEGRSMVELYPDSIENVRHQL RVSLNLEKPDERDQDGYVFHTNGEFLYQSDYTVQDEAAEENEMTSINGNTYIGVPGNTQT GPLPSVKTENGFIK >gi|307679028|gb|GL456769.1| GENE 5 5010 - 5441 527 143 aa, chain + ## HITS:1 COG:no KEGG:EF2702 NR:ns ## KEGG: EF2702 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 143 1 143 143 272 100.0 3e-72 MFSYTDTILSIMQRIEVYNEIFKAISKEVQEYGCNQAAHRRGRDTYMFCRNNVNRFFTEE MMFRKNLEPYYDKEATKILLEGLDTYKEGVFFWLEALSESCQVTDELKYQLGIRQKESSY LLINQACKEACEGIQSAHSVHKM >gi|307679028|gb|GL456769.1| GENE 6 5486 - 6010 763 174 aa, chain - ## HITS:1 COG:L36177 KEGG:ns NR:ns ## COG: L36177 COG0454 # Protein_GI_number: 15674159 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Lactococcus lactis # 3 173 2 167 169 127 39.0 1e-29 MTVYLRKAEPSDLPDILAIIEDGRRTLQKSGIPQWQNGDGPNQEILAKDIDQQTCYILMV EDTLAGVGVLCSEIDPAYEAIFNGSWQPHSQTTYTAIHRVALKSSFQGQGLALVLLRSLV TAARLQGATDIRIDTHPQNLAMQHLIKKAGFVYQGDVILDVNDGERYAYQMILK >gi|307679028|gb|GL456769.1| GENE 7 6027 - 6848 908 273 aa, chain - ## HITS:1 COG:CAC1777 KEGG:ns NR:ns ## COG: CAC1777 COG1051 # Protein_GI_number: 15895053 # Func_class: F Nucleotide transport and metabolism # Function: ADP-ribose pyrophosphatase # Organism: Clostridium acetobutylicum # 34 265 25 294 307 125 33.0 1e-28 MPQFASKAEEKNYYERQASLAEFLTWYHQQELPEYEKPSLTVDMVLLCYNKEADQLKVLL IQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLHSFSRPDRDPR GWVVTVSYLAFIGEEPLIAGDDAKEVHWFNLERHGQHITLSHEDVEITLDLKTAASLGKD TLAFDHSEIIIKAFNRVVDKMEHEPQVLQVLGKDFTITEARKVFAKFLGVDYRSIDHSNF KKAMTQYFEELGERPVGIGRPSKIYQLKTTTGF >gi|307679028|gb|GL456769.1| GENE 8 7046 - 8233 1595 395 aa, chain - ## HITS:1 COG:lin2081 KEGG:ns NR:ns ## COG: lin2081 COG3853 # Protein_GI_number: 16801147 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in tellurite resistance # Organism: Listeria innocua # 1 393 1 398 399 377 62.0 1e-104 MTEQQPKETTSVTNTLDDLLSNPFSSMDELTPTQQNELSELKEQQAAPRLIDKLPQERQA QAKELASKIDVQDSQAVITYGSNAQIKLGEFSQAMLNHVQAQDIGPVGDSLTDLMFRLNE ANPNELRAGEGNFIQKMLGKVKQSVYEITAKYQKIGAQIDKIAVKLTHEKDGLLKDNAML DQLYQKNKDYFDALNIYIAAGELKAEELRTQIIPEAMKKAEESGDQMDVQIVNDYNQFLD RLEKRTHDLRLARQITIQQAPQIRLIQNTNQALAEKIQSSVNTAIPLWKNQVVIALTLLR QKDAVTAQRQVSETTNDLLKKNSEMLKISAIETAKENERGLVDIETLQKTQNDLIETIQE TLRIQQEGKEKRQAAEIELGHMEEDLKNKLLELTQ >gi|307679028|gb|GL456769.1| GENE 9 8253 - 8933 816 226 aa, chain - ## HITS:1 COG:lin2080 KEGG:ns NR:ns ## COG: lin2080 COG4915 # Protein_GI_number: 16801146 # Func_class: R General function prediction only # Function: 5-bromo-4-chloroindolyl phosphate hydrolysis protein # Organism: Listeria innocua # 71 226 62 217 219 88 28.0 1e-17 MNKLNTKLLIGYILLGALIIAVAREYGFFAFVILVGFLVFVLYRKKKNAADKSDQMPYLT KDKEAHYRELGLSPQEIDFFRSTMSTAKKQIIQLQENMNRSTKLRAIDLRNDTTKVSKAL FKELVKEPKKLHLANHFLYTHLPNIVDLTSKHLEIEQHEVKNKQTYEKLEESAQIIDQLS KLVKNDYEEIVSDDLDDLDVEMSIAKSSLSQKAATEESPQVNEDQQ >gi|307679028|gb|GL456769.1| GENE 10 9336 - 9920 602 194 aa, chain + ## HITS:1 COG:lin2079 KEGG:ns NR:ns ## COG: lin2079 COG0494 # Protein_GI_number: 16801145 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Listeria innocua # 5 185 2 180 185 181 54.0 5e-46 MLNYEDFEEKTLQRREIFKGKIIDVFLDDVALPTGGTAKRELVFHSGAVAMIPLTAEGKI VLVKQFRKPLEQVILEIPAGKIDPGEENQLETTAMRELEEETGYRAGQLTYINSMYLSPG FANEKLALYLATDLQKVENPRPQDEDEILELYELTIAEAKAEVAKGTICDAKTLFAIQYW ELYLLQRQFKEDTQ >gi|307679028|gb|GL456769.1| GENE 11 9917 - 10213 444 98 aa, chain + ## HITS:1 COG:no KEGG:EF2695 NR:ns ## KEGG: EF2695 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 98 1 98 98 103 100.0 2e-21 MSKGPLVTRTELRKRREAEEKEAERRQQEEQKLAEKAYKRKEKEISTFYRKEKKKQKPIN KSRVGEYSKRRERSTWLNKAIIIVAILLAVVAYIVLNL >gi|307679028|gb|GL456769.1| GENE 12 10229 - 10924 1066 231 aa, chain + ## HITS:1 COG:L132777 KEGG:ns NR:ns ## COG: L132777 COG0775 # Protein_GI_number: 15673862 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Lactococcus lactis # 3 231 36 259 259 217 53.0 1e-56 MKIGIIGAMDQEVKILKEKLTDTMSWERAGALFVSGSLGRHEVIVVRSGIGKVASAVTTT LLIHQYGVNMVINTGSAGGIGEGLKVGDLVIADKLAYFDVDVTGFGYAYGQLPGGVPLYF ETSEYLRMEIAKAAEKTGLAIRKGLIVTGDTFVDSAEKIAKIKKEFPEALACEMEGAAIG QAASQFNIPFLVVRAMSDTADGEATQSFDEFIDEAGKKSAEMVIHFVENLV >gi|307679028|gb|GL456769.1| GENE 13 10991 - 11257 292 88 aa, chain - ## HITS:1 COG:lin0209 KEGG:ns NR:ns ## COG: lin0209 COG2827 # Protein_GI_number: 16799286 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease containing a URI domain # Organism: Listeria innocua # 1 84 1 82 90 83 64.0 1e-16 MENKKSHYFYVLLCQDGSFYGGYTTEPERRLTEHNSGTGAKYTRLAKRRPVKMIHTEKFE TRSAATKAEAAFKKLTRKQKEQYLKTFH >gi|307679028|gb|GL456769.1| GENE 14 11247 - 11981 891 244 aa, chain - ## HITS:1 COG:SPy1411 KEGG:ns NR:ns ## COG: SPy1411 COG4123 # Protein_GI_number: 15675331 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 243 5 247 258 280 55.0 1e-75 MLLSGERIDQLYADDIQIIQSKEVFSFSIDAVLLANFPQLPKKGKIVDLCAGNGAVGLFV SRKTAAKIDQIELQPRLADMGQRSILLNKLEKQVTMYERDLKQATEVIKKDSVDLVLCNP PYFKERPTSQKNPNPHLAIARHEIHTSLQEVVTVSADLLKTNGRLAMVHRPDRFLDILHA MENANIAPKKARFVYPKPGKEANVLLIEGIKQGKKDGFRVLPPLFTYNEKNEYEAEMKAM LYGE >gi|307679028|gb|GL456769.1| GENE 15 12170 - 12796 758 208 aa, chain + ## HITS:1 COG:SP1624 KEGG:ns NR:ns ## COG: SP1624 COG0204 # Protein_GI_number: 15901460 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 195 1 196 249 244 57.0 8e-65 MFFTFMRGVVRVILFVINGNAHYENKEKLPKDQNYVLVAPHRTWWEPLYLAVAGSPKKFS FMAKKELFKNPVLRFILKHANAFPVDREKPGPSAIKTPVKILKNSDLSLIMFPSGTRHSS ELKGGVALIAKMGRVPIVPSVYQGPLTLKELFKRKKVTVRFGEPIDISDIKKMDKDGLAE VERRMQEAFDQLDKEIDPTFKYESTEKE >gi|307679028|gb|GL456769.1| GENE 16 12980 - 14116 1040 378 aa, chain + ## HITS:1 COG:L0327 KEGG:ns NR:ns ## COG: L0327 COG0420 # Protein_GI_number: 15673304 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Lactococcus lactis # 1 378 1 390 390 263 41.0 6e-70 MKFLHTADWHIGKKLHGFDLLAEQKEAFKQILAIAKEEQVDAVVIAGDLYDRSVPAVEAV EIFNEMMIQMNLKEHLPVLAISGNHDSSTRLETGGPWFNQTQFHLNTRLEQAFQPIEIDN TQFYLLPYFEPIAARLYFEDETIRTIQAAMEKVVAKMQESFLPNKKQVLVSHFFVAGSEK TDSETKLTVGGLDVVPTALLEPFDYVALGHLHGKNALQAPNARYSGSPVKFSLSEMTQEK GVWLVETEAEVHFQFRALKPLRDIQQLTGSFQQLTDPAFYQEVNRENYLHVQLTDRAIIP NMMNQLRKIYPKIIGLERLNGRETSNGNQKKVVQIEQRSPEEHLHDFFNDVTGEALTEQQ AQWVQEELSTLNQLERGK >gi|307679028|gb|GL456769.1| GENE 17 14121 - 17258 3834 1045 aa, chain + ## HITS:1 COG:L152588 KEGG:ns NR:ns ## COG: L152588 COG0419 # Protein_GI_number: 15673303 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Lactococcus lactis # 1 1040 1 1041 1046 307 28.0 7e-83 MKPLSLTLKNFGPYINETIDFTKFEDSSLFLISGKTGSGKTTIFDGMSYALFGESSGKLR LGKEMRSTFADPSEATEVTLLFKHNEYLYELNRLPEQELFKKRGTGVRKQSAKISLIVKD AQGKELRAYSKRREVDELIQELLHLNANQFAQIVLLPQGEFRTFLIAKSDEKEKVLRNLF GTELYQLFSENLKERLKIANQEIQETQQKIELKTEQLHWSEEPEPTMTLFEKLQLLESQQ QEAQQQLLVEREQIATLKQAKQAKEQVRYAIEERQNLQQQKEELLEKKAKQAEQETVIER LKEQIQQLKWSQKQQSLAEKVFEKRSEKQQKEQETKSKQQALMETQQALTDWQAIMSELE EQQPLIAEKQERLQTIQRQLPQYQEYEQLAQRKIAEQANYQAIQKEYESCQQEKTTLADK VATAKQFIEQEGTLEKANFECSSVADHWQNFVERWQKNQKAWQKISQNQGELHELTQRFA VEQQQKSVEEAKLQTKKSQWASLQIQRLSLLLEEGEPCPVCGSLEHPKQQTHQEVSLEEI DQAERELTEVEKTVQRFTETLSALGAEKQQKESQLQEQEAAYTEEQEQLAAQFADLQLPL TGLTFSQVTPAEIAEVESQLAKEKQQIAQKLTEISVEKDRLAELEEQVAENSQRFEVLRQ QVETMQQSLERITIQQQMIASQLLDATVTYEEMTKQQALLQEELSAFERQKENVTTQGET LKKEEMILESTLTHLEKEQQTLQQTVAQLESQLNAVLTEQGVTEDQLTEWLKEVPTLESQ QEQIALFEQEQTQLTIQLAEIEKKLSSDTFPELSLIITEIEQITQQIEEQEKKYYQLHEK MQNNQQLVQEINAQRTTIEDKFEEVAALQQLADTVNGNNPKKISFERYMLQTYLERVLTV ANQRLDRLTNSRYQFELNHEAGSYRNQTGLEINIYDDNSGTVRSAHTLSGGESFIAALAL ALSLAEVIQEQAGGVLIDALFIDEGFGSLDEEALEMAMEALETIENEGRMIGIISHIGEL KARIPQQLQIKSNGNGQSTVHYQLA >gi|307679028|gb|GL456769.1| GENE 18 17278 - 20475 3516 1065 aa, chain + ## HITS:1 COG:lin1685 KEGG:ns NR:ns ## COG: lin1685 COG0553 # Protein_GI_number: 16800753 # Func_class: K Transcription; L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicases, SNF2 family # Organism: Listeria innocua # 5 1063 12 1065 1072 638 35.0 0 MKWSIPERIVEQGREYMQEGRVLSIVQNPEKRIWLSEVLGEELYLVELDGTAKEQDVCEC QYWMEHGYCKHTVAVELALKQRGVSRIIQANQTVSFEKTNRSTAEMFTKGFAKLSKASAE VPLQPLRLEFHLDVIETNNYYPELSTIGLSLKIGLEGTKPKTYIVKNIGDFLQAYEKEMT FMVNKQHQFTLLHDSFSMEIQEILTELAAIYHTSQLLGANGIQVKGKIDKRYLLLPIDRS QSLVEKMNRTGQFILTNQTHKYRYLTFKETSLPLTFTVQKTEEQSFKLTIQNPITTFLAH YHWAIADQTVYLLTEEQEAIYTTLLQLMKRLEEPSIIYEKETVSDLFSEVLPLLEKIGRV SVEESVEELVVHHPLKAVFIFKKIKGRINARIDYHYGEVIFSTNPKYAQLPEVNQEIVRD KAKETAIKQQFQQFAYQQTTTGFEKVLPAGESLYYFFKAEVPAFRQLGEVRMGRKLRELY LDAQHHQPTIEVAEGDSWLDIRFDVTGIDETEIDAVLTSLLRNDAFYTLKSGEILAFDSE EFFHTSAILTKLRKNMHQEDNVIHVPKNQGLMIESLLEDNERAHFSDSFKKMVTDLTHPE NFEAQVPKSLQATLRHYQETGYKWLKMLSHYQFGGILADEMGLGKTLQTITYLLSEKEEE RLKGTALIVAPASLTYNWLAEVKRFAPTLNVQVVSGNRQERAALLQNSTEDILITSYASM RQDVQLYQEMRVGYLILDEAQMVKNSGTKTAQALKSLKVPQRFALSGTPIENNLDELWSI FQMILPGLFPGKKAFREIKPEEIAKMIQPFILRRDKKTVLADLPEKIENNMYSVLTEEQK TVYLAYLKQMQADVSQMDQATFKKNRMSILAGLTRLRQICCDPRLFIEDYTGGSGKVEQV KDFLVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFNEG EKDVFLISLKAGGTGLNLTGADTVILYDLWWNPAVEEQAAGRAHRMGQKKVVEVWRMIAE GTVEEKMNSLQQEKRELFQKVIQGNEEQLAKMTEEDIRTILSIGE >gi|307679028|gb|GL456769.1| GENE 19 20525 - 21448 1054 307 aa, chain + ## HITS:1 COG:no KEGG:EF2687 NR:ns ## KEGG: EF2687 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 307 1 307 307 530 100.0 1e-149 MKQKEYMEYRPLGEEIERIRKGKNIPLRVFDENGVSSRSYQRFVQGNSELRISDLAIIVE ILSISPMEMTEKLTPMSKTVLAKEQFNQAIFSKNFQESSRIVADYRAYYEKSSFALGKQE VMYSMLALEYLFNPQTVVTKEEIIALENQILERLINADVYTIFNLKFLALQKNVGLQPFP TSLLFRVLQSVNEREIIDIRSLEIIEQVIIDFLFAAIVSQNVPHILHVLSMFKEYEVGEN NWRMILWKKIAEKIEMILTNEEIFADWSIFKEQILLSITLFLPKAKQEFFAGQLEKIEDS LKEIKEN >gi|307679028|gb|GL456769.1| GENE 20 21617 - 23788 2061 723 aa, chain + ## HITS:1 COG:lin0372 KEGG:ns NR:ns ## COG: lin0372 COG4886 # Protein_GI_number: 16799449 # Func_class: S Function unknown # Function: Leucine-rich repeat (LRR) protein # Organism: Listeria innocua # 110 473 39 384 656 165 33.0 3e-40 MKKMCISAVSALLLANSLLLPVTTFAETTETIASSSEENVSSVSEEKIPETSSAEEQNSA TSSSEIPQSEELTTVETSEEPPNEALAITEAQLMMPQLYAGAVLDKATPISTLFPDPAFA ENIRKQLSKSRTSNTVTQAELDKLNKVILENVVVSNVEGVQYLRNLEELSFQDSLNVTDL SPFAKGEFKLLRFLYMRNNKIADLSPLGQAGLINLEGLYVENNQLTTLNGLEGMAALKNL SIQNTTDHPSKITPNNRVTSFDPLRSLRNLETIWAANNQIATLDGLTEANNLLRLYVENN QLKTIAPLANKPRLEELSIMNQTIASLEALSTVPNLRVLYARNNQISSLAPLEKTLNLTV LDVGENQISDISPLKGLTAITGLDVSNQMIILSSVDYIAGKPLQLKNKVVSRDGQLFPPL TISPYGSYDATKGLFEWNLPKAHEGVSYIWESTDKAYLGNFSGTVVQPVKEVFLSETKLS WSKERIEKSMEKTIDIDDFQKTALPFYWQDVDAGNRLQFIVKKEGQEIQKLADETTTNSK TFKEKALLLPELTYGKQQLVVEVYDKGYKIDELALTVTVVGSVRFKTVPTAISFGNELQI ASSTTQYPIVSMDQPLVIRDTRQTGNNWSLALTVTSDFKSESGATLPNILKFRTNHRLQD IPEGQSILVHNQVNGHQETNISDQWKENDQELLLSVPGGTAKAEEYEAKLTWHLMDVPDG SAK >gi|307679028|gb|GL456769.1| GENE 21 23825 - 24160 160 111 aa, chain + ## HITS:1 COG:no KEGG:EF2685 NR:ns ## KEGG: EF2685 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 111 12 122 122 203 99.0 2e-51 MLLGLISSVDVFAETNAYPTNAEVSFYGEYEPPANKEKPDGKIPQRFPKQSEAIPAVSGE SLKHSTSKTVDQKGSGFLPRTGTKQQQMFNYLGIIVIFMASFILKKRKKEQ >gi|307679028|gb|GL456769.1| GENE 22 24162 - 24944 999 260 aa, chain + ## HITS:1 COG:no KEGG:EF2684 NR:ns ## KEGG: EF2684 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 260 1 260 260 441 100.0 1e-122 MKKIILATIPAITLGVAIAPEVNAEEKNYESNAIVEFTPDASINKPVDPVNPDTEKPVEP FDPTTPDTGNKPNEGTTGPLSIDYASSLDFGKNKISNKDEKYYANPQYFFLADGSGPDLT NPKPNYVQISDKRGTNAGWALTVKQETQLTATKETLNKVLDGSEIKLSQNKAVSNSKAVT PTAHEVTLVAGDSSNVMSAAEGQGSGTWLSAFGGIEKVEVDGESVDKNTAITLTVPGATP KDAVQYKTVLTWTIADLPSV >gi|307679028|gb|GL456769.1| GENE 23 24984 - 25706 1030 240 aa, chain + ## HITS:1 COG:no KEGG:EF2683 NR:ns ## KEGG: EF2683 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 240 1 240 258 415 100.0 1e-115 MKKMTIASSLILATIAVGTLPVQAEEVANRDTDAIVKFKAPDEKDPNSKNPVVDPEDKDG KDPVTPIDPVNPDKPVDEGSTGPLTLDYASSLNFGENIISTKDEIYFASAQVLKDKNNVE KTGPLFAQITDNRGTLEGWTLSAKQNSAFTSATKGQTLEGTEIVFQNASAVTAGQSAAPT SLASVTFGTVGESHNVMVAATDQGAGKWSYLYGNASSIAEVDGRQVMKDVQLKVPGKSVK >gi|307679028|gb|GL456769.1| GENE 24 25834 - 26859 1019 341 aa, chain + ## HITS:1 COG:no KEGG:EF2682 NR:ns ## KEGG: EF2682 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 312 1 312 341 531 99.0 1e-149 MKNRYFILMILSFYFFAFGIETSAAELRFSVETEIPENQIDKTKTYFDLMMKPDQEQILK VRAANSTDENLVIDVSVKSATTNSNGVIEYGESLTALDKSAPADLSEIIQLKDGGESVEL PAKSEKVVELRVKMPKEEFSGQLAGGITFSEKVDETKDKQKENTNGLAIENRYAYTVAVL LRENETVVQPELSLEKVEPTQRNARSVISATLLNHEAAYLQSMKVTANVKNKKTNNVILE KEQEDMQMAPNSIFNFPIPYEENEMEAGTYVLAMTVEGSGKKWQFTKEFTISKEEAKTFN EKDVTVKKTESKLIYLLIGLLLLLLIICLFIILRLKKQKNK >gi|307679028|gb|GL456769.1| GENE 25 26896 - 27609 523 237 aa, chain - ## HITS:1 COG:SPy0596 KEGG:ns NR:ns ## COG: SPy0596 COG1011 # Protein_GI_number: 15674680 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Streptococcus pyogenes M1 GAS # 4 237 5 238 300 273 55.0 2e-73 MRTIVFDVDDTLYDQQQPFRNAMTKIFPNVATEDMHELYLRFRHHSDETFPKVLANEWSL DFMRFFRMNETLKDLNYPGISQEEGKIFQQVYEEELDNITMHPEVTKLLDTLQEKEIPMG IITNGPTDHQFKKVKQLNLEKWVPSQNIIISQSTGFQKPEKEIFDLACNQFCMEPEHTLY VGDSYDNDIVGARNGGWHSLWFNHRSRELPSCQPASHLAEVTCFTELCPTVEKLFNL >gi|307679028|gb|GL456769.1| GENE 26 27937 - 29652 244 571 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 347 560 36 255 329 98 32 3e-19 MLKRFFGYYRPYRRLFILDFGCAVFAGLLELAFPVAVNQVIDKIMPKGDFRLIALASAGL FAFYIINTFLQFIVVYFGHMLGVNIETDMREELYQHLQTQPFEYYDNQKTGKLMSRLTTD LFEISEVAHHGPEDVFITIMTLAGSFLLMLTIHVKLAIATFILLPFITIALGYFNKKMTK ANTDIYDNLGEFNAGIEASVSGIRVTQSFANEPFERKQFNYLNQMYRKSKLYFYKVMGVS SAYNYLLIRLINLFSLIFGAYYTIKGEITEGQFVGFILLANIFIRPIEKVNNMIESYPKG FAGFKRFTEEMDKQPSIKDLPGAVAVSHLEGTIAYKDVSFAYEDGTKVLDHINLKIQPGE TVAFVGQSGSGKTTLCNLLPRFYEVSSGEITIDGRNIQQMTLASLRKQIGIVQQDVFLFP GTLRENIAYGNLNATEIDIQQAVKLAHLEHVIQLMPDGLDTIIGERGVKLSGGQKQRVAI ARMFLKNPPILILDEATSALDTETEQVIQESLNSLANGRTTLIIAHRLATIKHADRIIVV SDQGILEDGTHETLYAQRGHYRRLYDAQFRT >gi|307679028|gb|GL456769.1| GENE 27 29696 - 30706 988 336 aa, chain - ## HITS:1 COG:lin2301 KEGG:ns NR:ns ## COG: lin2301 COG0180 # Protein_GI_number: 16801365 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Listeria innocua # 2 336 3 331 331 465 70.0 1e-131 MKTIFSGIQPSGTPTIGNYIGAMKQFIELQNEYNCYFCIVDEHAITVPQEPQKLRQQIRS LAALYLAVGLDPQKATIFIQSEVSAHAEAGWIIQCNTSIGELERMTQFKDKSQKNGRAGV SAGLLTYPPLMVGDIVLYNADLVPVGDDQKQHLELTRDFVERFNKRYAQKNQEILTMPEV KIAEQGSRIMSLQEPTKKMSKSDTNVKGFISMLDEPAVIRKKIRSAVTDSTGVIEYNKEE KPGITNLLNIYSAATGQTVEELVQAYEGKGYGDFKADLAEAVVALLEPIQVRYQELLASE ELDMILDEGAENARLVANKTLQRMKNAVGLGRKVRR >gi|307679028|gb|GL456769.1| GENE 28 31066 - 31464 377 132 aa, chain + ## HITS:1 COG:lin2295 KEGG:ns NR:ns ## COG: lin2295 COG1393 # Protein_GI_number: 16801359 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Listeria innocua # 1 129 1 129 131 194 79.0 3e-50 MLTLYTSPSCTSCRKARAWLQEHEIPFKERNIFSEPLNIEELKAILIMTEDGTEEIISTR SKVFQKLNMDLDELPLQDLLELVQENPGLLRRPIMIDEKRLQVGFNEDEIRRFLPRDVRQ LELRQAQLMAGL >gi|307679028|gb|GL456769.1| GENE 29 31807 - 32469 836 220 aa, chain + ## HITS:1 COG:lin2294 KEGG:ns NR:ns ## COG: lin2294 COG4862 # Protein_GI_number: 16801358 # Func_class: O Posttranslational modification, protein turnover, chaperones; T Signal transduction mechanisms; N Cell motility # Function: Negative regulator of genetic competence, sporulation and motility # Organism: Listeria innocua # 1 218 1 217 217 91 30.0 1e-18 MEMEHINENTIRVLIGNEDLADRGITFLDLLGNHKDVENFFYSILEEVDVEDEFQGSEAV TFQVLPKNDGLELFISKNVAMDDLSSLEGLSEVNADVSELIRKQIEADKAAADELDEMEA TDETNRNVIFELDNFEAMIQLSKEVFMQSVLTNLYTYNDRYYLQVLFLTDELEKTNVDNE IAQILEFAHKTTVTQDTLVEYGTCIMERSALELTRYYFND >gi|307679028|gb|GL456769.1| GENE 30 32558 - 33736 605 392 aa, chain + ## HITS:1 COG:L168238 KEGG:ns NR:ns ## COG: L168238 COG4469 # Protein_GI_number: 15673710 # Func_class: R General function prediction only # Function: Competence protein # Organism: Lactococcus lactis # 1 288 1 282 329 156 37.0 6e-38 MLTALTADNQELFSLIDCSIDELTQIRSEQAFVCPMCHQSVILKAGPIKIPHFAHRKKNS CWYEAEAETEEHLRLKQLFAEKCLREKLSFQVEAYLPALKQRPDLLIGKIAIEIQCSPLP IKRLVERTETYQTHGYQVVWILGERLVPKDKLTQLTKQFLYFSESLGFYLWSANKKQERI ELLCHIEESQCQQFYRRKQSWDFYEKKLLEIFRLPTANLNLLPDRRHTGQLMHDYYQKLT QQLGYRNAQLLRTQSFLYTKGCHLLQLPPWFYYPGLKLLPSSEEDIHLKMLVWEALKTKE GRLVTKQELWRILEAVFFKEGNFVWQPLPNIGLKKLFKIVGNNLLRWLQECYVLIKVNNK YLITSIFLREDPEKLIHWLKKVKKQHFFSHTC >gi|307679028|gb|GL456769.1| GENE 31 33784 - 35595 2294 603 aa, chain + ## HITS:1 COG:lin2292 KEGG:ns NR:ns ## COG: lin2292 COG1164 # Protein_GI_number: 16801356 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Listeria innocua # 1 601 1 601 601 667 57.0 0 MSEIKQLPTRDEVPTPLTWDLTKIFKDDAAFDVAYNQLTEELNQAESFKGTLGNGAEAFL AALEYVLDVYRKVETLYVYSHLKNDQDTTNTAYQALYARASSLYAQVSEAVSWFDPEVLT LSDEQIWGYFEEQPKLAVYRHYIQNILDERPHVLSMEQEALLAGASEIFGASSNTFSILN NADLEFPTVQNAEGETIQLSHGVYGQLMESVDPSVREAAFKGLYKVYKQFRNTLASTLGA HVKTHNYKAKIRNYDSARAASLASNHIPESVHETLVAVVNKHLPLLHRYVKLRKKLLNVE ELHMYDLYAPLLGEAPIRYSYEEAKEKAIEALKPLGEDYLSIVKEAFSSRWIDVIENQGK RSGAYSSGAYDTAPYILMNWHDSLDQLFTLVHEMGHSVHSYYTRNNQPYVYGDYSIFLAE IASTTNENILTEYLLQTETDPKVRAYVLNHYLDGFKGTIFRQTQFAEFEHFIHTEDAKGT PLTSEYLSEYYGELNAKYYGPEVVRDEEISYEWARIPHFYYNYYVYQYATGFSAASALSK HILAGEEGALENYLNYLKAGSSDFPIEVMKKAGVDMTQAAYIEDAMKVFEERLTELEALV EKL >gi|307679028|gb|GL456769.1| GENE 32 35786 - 36505 576 239 aa, chain + ## HITS:1 COG:SPy1834 KEGG:ns NR:ns ## COG: SPy1834 COG1396 # Protein_GI_number: 15675661 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 99 1 100 195 71 38.0 1e-12 MNIGNSLKMRRNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSNLYEMTLDR LLKEDNTMVEKLSKDIREGQKYKKLFLILLIIVLCIGGYFTILQLRLNNFYSGVKEWNQN GQTYNLIEDNIQYHVVKIDNYNLFTIPEELELMSSYISENEKFNMYYSGDDSNIKIYWTT GALNGLELSFDKEFIFDNVNQRNKFSYEIQELINKNLDKDKKELTILYKQTKNKWEEIN >gi|307679028|gb|GL456769.1| GENE 33 36788 - 37447 705 219 aa, chain - ## HITS:1 COG:lin0963 KEGG:ns NR:ns ## COG: lin0963 COG2761 # Protein_GI_number: 16800032 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis # Organism: Listeria innocua # 2 165 17 181 272 73 31.0 3e-13 MVEIYLFVNPLGGVCLEIEKEIIQLSVNDKKKIQLRFIPLLNMKTINEFLSRQHIPINDI KRRNRIFEDLYSAALDYKAAQLQGRKKGRQLLIGLQKAVAEDGLAYSPELSEELLLAADG DIDMYRKDRQSDFVKESFQTDQKVAREMGIKQHPTAVVYNYTCENDFGILVENFENMDEI KQLCRVHPHNEPLLDQGDATFEFKRRSNYHFPNGHLHLL >gi|307679028|gb|GL456769.1| GENE 34 37511 - 38089 691 192 aa, chain - ## HITS:1 COG:lin0964 KEGG:ns NR:ns ## COG: lin0964 COG4116 # Protein_GI_number: 16800033 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 185 1 184 194 134 41.0 1e-31 MSEHLEIEFKTLVSPQDFKRLIDHFAIQKTDFFTQTNHYFDTDDFQLKAQRMGLRIRVLA DRGELTLKVPAPEGLLEINDPLSLETANHFIKRNHLPTEGAVAKKLQELGIEIASIHLIG SLKTARAEKQIPQGLLALDESWYNQQHDFELELEVTEAESGKQAFQTLMADLNIPITLAP NKIQRMMRTTAP >gi|307679028|gb|GL456769.1| GENE 35 38286 - 38960 751 224 aa, chain + ## HITS:1 COG:lin0966 KEGG:ns NR:ns ## COG: lin0966 COG2357 # Protein_GI_number: 16800035 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 5 205 4 204 222 263 72.0 1e-70 MEREWELFLAPYEQAVSELKVKLRGIRKQFREQDKHIPIEFVTGRVKPVDSILTKTAIRH IPLNRIEEEMQDIAGLRIMCQFVEDIYQVVALLRNRKDLKIVEERDYIENKKESGYRSYH VVVEYPVQLVTGEKIILAEIQIRTLSMNFWATIEHSLNYKYQGVFPEEMKERLQRAAEAA YLLDEEMSSIREEIQEAQHYFSHGRGLLENEYYKQIKNETPENQ >gi|307679028|gb|GL456769.1| GENE 36 38973 - 39770 693 265 aa, chain + ## HITS:1 COG:L166614 KEGG:ns NR:ns ## COG: L166614 COG0061 # Protein_GI_number: 15672345 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar kinase # Organism: Lactococcus lactis # 2 264 6 268 270 268 52.0 9e-72 MKVAIVHNSEEKSKQVTKQLTTLLEQNQIQIDNRQPELVISVGGDGTLLSAFHRFNHLLN EVSFLGVHTGHLGFYTDWRDYELKELVESLCIHREKSTSYPLLDVRIRFRDGKPDKHFLA LNESTIKRGNRTMVGDVFIKDELFERFRGDGLSISTPTGSTAYNKSIGGAVLHPSINAFQ LTEIASLNNRVFRTLGSPIVIAHTEWLEIKLQESDDYFVTVDQLDIYQENIASVCYRIAD ERIHFASYRHMHFWHRVKDAFIGED >gi|307679028|gb|GL456769.1| GENE 37 39778 - 40671 264 297 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 39 285 41 279 285 106 31 1e-21 MEFQWTYDKETTQQVKYFLKEQGVSKGLLAKVKFQGGKIQVNGTVQNAIYPLQTGDVVKM TIPDEAEHETLLTDDEPIEIVFEDDHFLVVNKPAGIASIPAQYHPSGTMANRVKGYYKRQ NYVNQVIHVVTRLDRDTSGLMLFAKHGFAHALIDQELREKKVTKIYYALVGGAIEQLSEH QLIEKPIGRDLSSLLKRQVIETGQFASTEYWLAKRGAQAAAVRIQLHTGRTHQIRVHFEA IGCSLLGDEMYHGKMDQGIERQALHCMELIFTHPFTKETVHLISPLAEDMKSVDDTL >gi|307679028|gb|GL456769.1| GENE 38 40702 - 42063 1730 453 aa, chain + ## HITS:1 COG:SA0867 KEGG:ns NR:ns ## COG: SA0867 COG2239 # Protein_GI_number: 15926597 # Func_class: P Inorganic ion transport and metabolism # Function: Mg/Co/Ni transporter MgtE (contains CBS domain) # Organism: Staphylococcus aureus N315 # 2 453 6 461 461 408 47.0 1e-113 MNEGQEMEEQFALLLETLKNQQMNEFRELFLALHIYEQGQFYQSLDEKDRQHLYNYLSPK ELADMFDVIEEDNENMKDYLAEMRPSYAADMLAEMYTDNAVDLLNMLDKSQKAKYLSLLS SEEAGEIKELLHYEDETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ ENHLVGVISLRDLIVNDDDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYD DHLLGIVTVDDIIDVIDDEAASDYSGLAGVDVEEVSENPLKAASKRLPWLITLLFLGMST ASLISNYESLVSEASILAVFISLITGTAGNAGTQSLAVAVRRLAMKDEKDSNFGRLILSE VLTGLVTGAVTGLTIMIVVGVWQHNLPLGFVIGMAMLCAITVANLAGSLIPMLMDKLGFD PAVASGPFITTLSDLTSVLIYFNIASMFMRYFV >gi|307679028|gb|GL456769.1| GENE 39 42227 - 42856 858 209 aa, chain - ## HITS:1 COG:SP1260 KEGG:ns NR:ns ## COG: SP1260 COG3142 # Protein_GI_number: 15901120 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in copper resistance # Organism: Streptococcus pneumoniae TIGR4 # 1 209 1 209 210 224 53.0 6e-59 MIKEFCAENFTKIPQAIQKGANRIELCDNLAVGGTTPSTGVIEEVLAYAGEHSVPVMTII RPRGGNFVYNDIELKIMHTDLIEAKKLGTDGIVIGCLTEDGWLDEEALDLFIETAEGLQI TFHMAFDALSKENQFKAIDWLAERGVTRILTHGGPAGTPIEDNFDHLKELIVYADQRILI LPGGGISTENVQTVMDTLKVTEVHGTKIV >gi|307679028|gb|GL456769.1| GENE 40 42986 - 43831 629 281 aa, chain + ## HITS:1 COG:L55507 KEGG:ns NR:ns ## COG: L55507 COG0500 # Protein_GI_number: 15673975 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Lactococcus lactis # 1 280 1 273 273 230 45.0 2e-60 MLKKIERAQQLLKKEAAVFRCPTCHEPMHLEGVGLICQQRHQFDLSKKGTLYFLNHSVQT EYNKKMFTSRGKMIQSGMYAPVLNKIMHYLPQNKTVVDVGCGEGSFLAELSQAGLSGLKI GFDLSKEGIYLASNQPIDAFWCVADLTNLPFANEGLDTILNIFSPSHYQEFRRVLKADGT VIKIIPEENYLKELRAAFYPNDEKKQSYSNQKVVQRFAEELAVEVDERITYCFDISEERR LDLLEMSPLEWQVSQEVKAELQQRPLEKVTIDVRLLVGRKR >gi|307679028|gb|GL456769.1| GENE 41 44144 - 44650 610 168 aa, chain + ## HITS:1 COG:SP0486 KEGG:ns NR:ns ## COG: SP0486 COG0219 # Protein_GI_number: 15900400 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase (SpoU class) # Organism: Streptococcus pneumoniae TIGR4 # 1 167 1 166 167 237 67.0 6e-63 MTNHIVLFEPQIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITY HKDLAAFLAHVAGKHLHLVTKFAHQTYSEVNYNDGEDHYFLFGKETTGLPETFMRENEEK CIRIPMNDEHVRSLNLSNTAALIVYEALRQQNFPNLELTHHYENDKLD >gi|307679028|gb|GL456769.1| GENE 42 44867 - 45511 729 214 aa, chain + ## HITS:1 COG:SP0984 KEGG:ns NR:ns ## COG: SP0984 COG0406 # Protein_GI_number: 15900859 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 207 1 204 206 160 42.0 2e-39 MKLYFTRHGKTEWNQQKRFQGMTGDSPLLPTSYDEIKQLGQYLQDIPFEKIYSSPLLRAK NTARGIQQELNHPVEIVYTDTLKELGLGRLEGQYIEEMRNFYGEELDHLRHRLDLYDPTI FDGEPIEQAIQRISETVAEAAKQHEGPVLFVGHGAALTAAIQAMAGKPLSELRTMGGLLN NSLSILETKEASRNMPYDLTLWNDTSFLAKEKAQ >gi|307679028|gb|GL456769.1| GENE 43 45538 - 48147 3006 869 aa, chain + ## HITS:1 COG:L180415 KEGG:ns NR:ns ## COG: L180415 COG0507 # Protein_GI_number: 15673722 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Lactococcus lactis # 10 860 3 824 834 727 49.0 0 MVTLFGEDEEKAFIVGTVQAIFFENPSNFYKVVLVNVTDTNTDYLEKEIVVTGSFGQVQE EEPYRFFGHFVDHPRYGRQFQVDSYQQERPTSASGVVNYLSSDKFPGIGKRTAEKIVEVL GESAIDRIIDDPSVLEEVTVLNEKKRQVIVETIRLNHGMEQVIVGLNRYGFGSQLAFSIY QTYQEETLSVIQENPYQLVEDIEGVGFKRADNIAEQIGIQADSAVRIRAAILHEVFEHSI RSGNTYVQADVLLEEAIRTLEASRPVEISPDQVANEIITLVEHGKIQQEETKLFENSLYF SEWGIGTSIQRLLSRKKEIHYEEEEVQKNIRMIEKRLNIQYGDSQQAAIEEAIKSPLFIL TGGPGTGKTTVINGIVSLFAELNGLSLDLKDYTQEMFPILLAAPTGRAAKRMNETTGLPA STIHRLLGLTGREKNPSLTAKELEGGLLIVDEMSMVDTWLANTLLKAIPTNMQVIFVGDK DQLPSVGPGQVLHDLLQINEIPKCELNEIYRQGDGSSIIPLAHEIKEGKLPADFQKNQKD RSFFASDIGHIEEYIRQIVTKAKAKGFTPQDIQVLAPMYRGAAGIDALNKMMQEIFNPND GKKKEVKWNDTVYRIGDKVLQLVNTPELNVFNGDMGEIVGITLAKDSEDKVDELVLQFDN NEVTYKRNEWNKITLSYCCSIHKAQGSEFRMVLLPMVHQYSRMLQRNLLYTAVTRSKELL ILLGEVSAFETCVKNESASRMTMLKERIVNAEQMTLTTRTQLEAYEEGLTADHPFTEKET KAVSYETEQQSTKANQIKETDEQLVDTMVQEVSLFADEGEESTPETANKATKVVEEPLPK EPRLTVEIIQTNAVDPMIGMKDTTPYQFM >gi|307679028|gb|GL456769.1| GENE 44 48214 - 49173 825 319 aa, chain - ## HITS:1 COG:L39484 KEGG:ns NR:ns ## COG: L39484 COG1597 # Protein_GI_number: 15673780 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Lactococcus lactis # 5 319 3 302 302 165 35.0 1e-40 MNIHYYLIINEQASSGNGRKVARKVIQQLKQQELKYTALYTDYAGHEKELTKELAETTLL PWSENLDVSTFPILVVLGGDGTLHNVINSLLPYDSAIPLSYIPCGSGNDFARGVGLSRNI DKALHQILRTRRPKEIQTIHYVEANQEEIGLATNNVGLGLDAAIVEKTNESSSKKALNKF KLGSLSYISSIIHVFFKQKGFPILVEMNGKQYTFNRAFLCTVTNHPYFGGGVSIMPTANP RKAVVDLVVVERINIFKILWLIFLLLRQKQGKSKHFHHFQSSKIRIVSTIPQTIHADGEI LGKRSIDMVYTTQKRLFWF >gi|307679028|gb|GL456769.1| GENE 45 49436 - 49942 506 168 aa, chain + ## HITS:1 COG:lin0860 KEGG:ns NR:ns ## COG: lin0860 COG4708 # Protein_GI_number: 16799934 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 10 168 2 161 162 100 41.0 1e-21 MQNSFQANRKLRTVLANGIIMGLYIVLSLLVRPVSSGMIQFRISESLNHLVVFNRKLMWG VLGGVIFFNLFFGFGVMDALFGGAQTLFALSLTAFLQKKVPSIPVRMCLNSLFFTVSMFF IAFMLVPSGGQAFWTTYGWLALSEAIIMTISAPIMYFINKSLKFETRI >gi|307679028|gb|GL456769.1| GENE 46 50180 - 51385 1413 401 aa, chain + ## HITS:1 COG:SPy1205 KEGG:ns NR:ns ## COG: SPy1205 COG2348 # Protein_GI_number: 15675170 # Func_class: V Defense mechanisms # Function: Uncharacterized protein involved in methicillin resistance # Organism: Streptococcus pyogenes M1 GAS # 5 401 9 404 407 325 44.0 1e-88 MYTFKIGIPAEVHDTFVKNHPLCNLLQSSSWAKVKDNWGSEIVGVYEKDTLVASSLVLIK PLPAGFTMLYTPRGPVMDYTNERLVSYFMAELKKFGKKKRALFIKMDPAVHYQDFHLGEE HQPHAEATAIIETLKKAGAKYQGLTMDMGATIQPRFQANIYREDFSEEQLSKSTKKMIKT AEKKGVVVQQGHVDFVDEFEKVIQSTMERQHISLRNSDYFKKLLNIYPEDSFIMLAQVNL KERLDSTRQRYDKNQKDLSNLKENQVKKRHNLEELDASLTRELKELEENIAEAGEIVTVA GALAVTFGPTSEILYAGLDDRYKRYMPTYVTWRDAIQECFNRGCESCNMGGLEGSLNDGL IKFKANFNPTINEFIGEFDLPVNKLLFKASEYAYKLRKQKK >gi|307679028|gb|GL456769.1| GENE 47 51441 - 52076 712 211 aa, chain - ## HITS:1 COG:CAC0331 KEGG:ns NR:ns ## COG: CAC0331 COG4684 # Protein_GI_number: 15893623 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Clostridium acetobutylicum # 1 205 6 192 192 89 33.0 6e-18 MNNTKKFTLTAMFLAILLLLALTPLGFITLGPLNSTTMHIPVIIGSIVLGPKIGSMLGGT FGIISLIKNTTAPTPLSFVFSPFIPVIGTDHGSWKALLIVLIPRILIGVVPYFAYKWLNK LTKEKAQPVSLFVAGVLGSATNTILVMNMIYFLFNSAYAEIIGKAGTAVYLAIIATIFSS GVPEALVAGVAASAIASVLLRLMKRNATQKL >gi|307679028|gb|GL456769.1| GENE 48 52080 - 52634 567 184 aa, chain - ## HITS:1 COG:SPy1222 KEGG:ns NR:ns ## COG: SPy1222 COG0452 # Protein_GI_number: 15675186 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Streptococcus pyogenes M1 GAS # 2 177 3 178 181 209 65.0 3e-54 MKTILLGVSGSISAYKAADITSQLTKLGYNVEILMTKSSTAFITPLTLQSLSKNPVHTDV MMEIDPSKINHIELAKKADLFLVAPASANTIGKLAHGIADDLLSTAALALYPETPKIIAP AMNTYMYQNPIVQRNIGILKEVGYQEIIPREALLACGDYGRGALATVEDILQTVMKILAS DNKE >gi|307679028|gb|GL456769.1| GENE 49 52631 - 53404 875 257 aa, chain - ## HITS:1 COG:SPy1221 KEGG:ns NR:ns ## COG: SPy1221 COG0452 # Protein_GI_number: 15675185 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Streptococcus pyogenes M1 GAS # 1 251 1 226 228 152 39.0 4e-37 MDVLVTAGGTSEPIDNVRSITNHSSGGLGKAIAESFLAAGHTVTYVTTKHALRPTQQLDL SIKEIETTVELATTLEQLFAEKQFDAIVHAMAVSDFTTETAQTEEQFIDSFAQQLSEQTL PKTKEALVTIVQNTLNQIADIPQTATKISSDTDRLLIFLKKNPKVIQMIRDKQPQTVLVG FKLLVDVSQEELVQVAQAALIKNRCDFVLANDLMNVHETEHEGLLINETGIVQEACSKQG IGSMIVKNVEKKWREQQ >gi|307679028|gb|GL456769.1| GENE 50 53420 - 54412 1392 330 aa, chain - ## HITS:1 COG:SAP008 KEGG:ns NR:ns ## COG: SAP008 COG0604 # Protein_GI_number: 16119208 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Staphylococcus aureus N315 # 4 329 2 323 323 313 46.0 3e-85 MNSFQAFTLREQDTSVIGQLETITLDDLSEGTVVIKAAYSSVNFKDSLASKKDGGVIRNY PMIPGIDVSGTVVTSEDPRFKEGDKVIVTGYQLGVSHTGGYSEYVRVPGDWVVPLPEKMS LKEAMIFGTAGFTAGLSVTALEDDGLRDDKEAPIIVTGATGGVATLSIAMLHQLGYTSIT ALTRKPDSFELLKELGVSECLLVEDFLATPVKALMKQRFAFAIDTTGGEITSAVLPQLRY DGRSAICGRAAGITLETTVLPFILRGVHLLGIDSVNVGMDKRKIVWQRLATDLDITEKAV YQEITLEELPPVFEALQAGQHIGRTIVRIS >gi|307679028|gb|GL456769.1| GENE 51 54676 - 55218 652 180 aa, chain + ## HITS:1 COG:lin0796 KEGG:ns NR:ns ## COG: lin0796 COG1396 # Protein_GI_number: 16799870 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 1 180 1 180 180 205 58.0 3e-53 MEIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEQ FFSQQPLEQKIVYNEEESTLYYDEEHGYELKWLIPASNEKEMEPVIITFDKNGEYKTFEP SLSETFIYVIDGSIRLTLGEATYIAKKGQTMYYQATEPHQISNNGRGKSRALIVATESYL >gi|307679028|gb|GL456769.1| GENE 52 55244 - 56329 1228 361 aa, chain + ## HITS:1 COG:lin0797 KEGG:ns NR:ns ## COG: lin0797 COG3842 # Protein_GI_number: 16799871 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Listeria innocua # 1 361 1 362 364 536 75.0 1e-152 MRNHVISFENVVKQFDDEPVLKNVSFEIEEGKFYTLLGPSGCGKTTILRIIAGFNDVTSG DVYFDGKRINDVPANKRQVNTVFQDYALFPHMNVFDNVAFGLKIKKLSKAEIEKKVKEAL RLVQLPGYETREISEMSGGQRQRVAIARAIVNEPKVLLLDEPLSALDLKLRTAMQYELRD LQQRLGITFIFVTHDQEEALAMSDEIFVMNKGHIVQSGTPVDIYDEPINHFVADFVGESN IVDGVMLEDNLVSFVGKKFECVDGGMRKNEPVEVVLRPEDLTITTLEKGKLTVTVDTQLF RGVHYEIICFDEQGNEWMVHSTRKAKEGAQVGLSFEPEDIHVMRFNESEEDFDARLESYD E >gi|307679028|gb|GL456769.1| GENE 53 56348 - 57154 893 268 aa, chain + ## HITS:1 COG:lin0798 KEGG:ns NR:ns ## COG: lin0798 COG1176 # Protein_GI_number: 16799872 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Listeria innocua # 2 264 3 264 269 347 73.0 1e-95 MKTMRRIYSIPYVMWLLLFVIAPVLMIIYQSFFDMNGQFTLANYQTYFTSGTYLSMTINS VWYAFLITIFTLLVSYPTAYFLTKLKHKQLWLMLVILPTWVNLLLKAYAFIGIFSIHGSI NQFMSFMGLGTHQILFTDFSFLFVATYIEIPFMIMPIFNALEEMNPSLISASRDLGASSA ETFRRVIFPLSLNGVKSGVQAVFIPSLSLFMLTRLIGGNRVITLGTAIEEHFLVTQNWGM GSTIGVILIVAMFIVMLLTGEKKKGRGK >gi|307679028|gb|GL456769.1| GENE 54 57154 - 57990 930 278 aa, chain + ## HITS:1 COG:lin0799 KEGG:ns NR:ns ## COG: lin0799 COG1177 # Protein_GI_number: 16799873 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Listeria innocua # 4 265 2 262 268 315 68.0 9e-86 MQKKKFKWSYVYLFVVFALLYAPIFYLIFYSFNDTQTMNQFTGFTLDNYRNVFEDTRLLT IVLNTFLLAFLSALIATIIGTFGAMGIYYTKRRKNRNTLLSFNNILLVSPDVIIGASFLI FFTAVGFISLGFTSVLLSHIAFSIPIVVLMVLPKLQEMNDSMVDAARDLGANNVQVIKNI ILPFLAPGIIAGYFMAFTYSLDDFAVTFFVTGNGFSTLSVEIYSRARQGISLEINALSAL VFLFSMILVVGYYFISKDNTPKRLKKMRREQSEVAKLK >gi|307679028|gb|GL456769.1| GENE 55 57987 - 59060 1274 357 aa, chain + ## HITS:1 COG:SP1386 KEGG:ns NR:ns ## COG: SP1386 COG0687 # Protein_GI_number: 15901240 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Streptococcus pneumoniae TIGR4 # 1 357 1 356 356 469 64.0 1e-132 MKKLQSLFIGIIAIIVILFFCVRQLEKASGMAGADTLTIYNWGDYIDPALIKKFERETGY KVNYETFDSNEAMYTKIQQGGTAYDIAIPSEYMIQKMMKAKMLLPLDHSKLKGLENIDAR FLDQSFDPKNKFSVPYFWGTLGIIYNDKFIDGRQIQHWDDLWRPELKNNVMLIDGAREVL GLSLNSLGYSLNSKNDQQLRQATDKLNRLTNNVKAIVADEIKMYMANEESAVAVTFSGEA AEMLENNEHLHYVIPSEGSNLWFDNIVMPKTAKNKDGAYAFMNFMLRPENAAQNAEYIGY STPNKEAKKLLPKEVAEDKQFYPDDETIKHLEVYQDLGQEYLGIYNDLFLEFKMYRK >gi|307679028|gb|GL456769.1| GENE 56 60032 - 60829 489 265 aa, chain - ## HITS:1 COG:no KEGG:MPTP_0597 NR:ns ## KEGG: MPTP_0597 # Name: not_defined # Def: hypothetical protein # Organism: M.plutonius # Pathway: not_defined # 1 245 132 374 394 213 46.0 7e-54 MLPWDDLPTTFKMLQGIQFPLRFASISYVLLFLSFTLYLQRITLKEENKYTSISVTYVTV AVLSCLLINQALLTQSEAWQSATPLSNDTTSTLTKIKDMNKLKQAFNGKHALGDGLELVI KPLSDYLPTHNKEDIDIIVRNKPYNIYWKEVANNEIKGKKQVTPEGQLQFNWINASNKTS QMLLPLTAYSNSEVWLNGQKLTKQQYKTSEIGSLIVPAQAGKNSLTIGYKPSLAFVIASY IQIIAYICLGTTFIYYFLKKHIKGN >gi|307679028|gb|GL456769.1| GENE 57 60730 - 61797 611 355 aa, chain - ## HITS:1 COG:no KEGG:LC705_01992 NR:ns ## KEGG: LC705_01992 # Name: slp # Def: hypothetical protein # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 16 320 16 319 593 199 36.0 2e-49 MFLKKFSINRSALFSIIGILLAAAIIVSAQLFRHSIILGTDSNFFMNKVYESYMQQKNHT YNYFQSLYGFQQSGRIINTVYAPDFTFIMGLLLAFSKTWFRFQIISSFLCFALAGLSMFT LARYNKITYKLAVGLSLFYMSTNVIASFSLIQTSSSWASAILPLVFIPAIKMIKDKAQPI QPLILAIPVALTMHLHVFTSLLTVLALLPFFIVGFILTPKKVRMLINAILAVLITMLLTS RLLIGMLEVFSSNHLLKPYPIERMMPYTTSFTLGVQDWGSLGLIFSLIATFMFVFTIFNW KTLVLTEKVINLVGLFFYFFHQVCYLGMTYLQHLRCFKEYNFHYVLLVFLMFSYF >gi|307679028|gb|GL456769.1| GENE 58 62863 - 64155 1417 430 aa, chain + ## HITS:1 COG:CAC2835 KEGG:ns NR:ns ## COG: CAC2835 COG2610 # Protein_GI_number: 15896090 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism # Function: H+/gluconate symporter and related permeases # Organism: Clostridium acetobutylicum # 6 375 4 374 384 313 58.0 4e-85 MPDITISWVAAILGLVVAIVLILKKFNPVYSLFFGAIVGCLIGGASLSDTVAVLLNGTQS IMGTAIRVLAAGMLAGVMMESGAAESIANAIVQKLGEKKAILSLALSTMVITAVGVFIPV AVLIVAPIALSVGKSTGISKLSLLIALSGGGKAGNIISPNPNTIAAANGFDLPLSDVMIA GFIPAVFGLITAVVLANIMRSKGSMVKETDLVEEQTKELLPLKKALIAPVLAIVLLLLNP IGAVLNISFIKSLNIDALYILPFASVVGTIAIGQTKQLAFYASSGLKRVTDTVLILIGAG AIAGLISVSDLSTQIVHLISVMGISGTFLAPISGILMGLAVGSTSTAVILATGSFGPAIL DMGTSSLSAAVMVHTGATVIDSVPQGNYFHITAQSMNMTIKERIRVIPYEMCVGGVMTIV ATILYGFILN >gi|307679028|gb|GL456769.1| GENE 59 64177 - 65325 1530 382 aa, chain + ## HITS:1 COG:L79277 KEGG:ns NR:ns ## COG: L79277 COG1929 # Protein_GI_number: 15672838 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerate kinase # Organism: Lactococcus lactis # 1 378 1 378 385 429 62.0 1e-120 MTKKFVLAPDSFKESMSAKEACLAMEKGILAVFKDADIQHVPMADGGEGTVDSLVDATGG TRVPVRVAGPLPDQIVETYYGLLGDQETVVIEMAKANGIELVKAAERNPLITSTYGTGEM IQHALNHGAKKIIIGIGGSVTNDGGAGMIQALGARLLDKEGQELTRGGGALDKLAQIDLT QFDQRIFATEVLVASDVNNPLTGPTGASHVFGPQKGATEEMVAQLDKNLAHYAAIIKKEV GIDVEMMPGAGAAGGLGAGLLAFTKAQLRPGIDIVVEVNQLEEKIKAADYVFTGEGGMDF QTKFGKAPYGVSRLAKKYQKPVFACAGYIGKDVDVLYEEGMTAIFGILAKAEPLEAALKN GPVNLERTVENIARTLQLVPCD >gi|307679028|gb|GL456769.1| GENE 60 65467 - 66480 902 337 aa, chain + ## HITS:1 COG:CAC2833 KEGG:ns NR:ns ## COG: CAC2833 COG3835 # Protein_GI_number: 15896088 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Sugar diacid utilization regulator # Organism: Clostridium acetobutylicum # 2 327 1 337 344 137 31.0 4e-32 MLKLDKIQANKIVEKLMADIPYNINIMDERGKIIASGDSARIGERHRGAERAINERKNIE IYKDTSLEKKGTNEPIILNDHILGVVGISGEPDEVRKFTKLVRSIVLLLTEELNTQQERE KKKKQKNQFIQHLMHVDSAYSEALKLEALELYNLQLDDQNHCVLTKDKRLLSSYYPGHEI FEWENCYLVITSEPPQITKPVTEYLVISSEKATIQQMVQEAQNTYLLLSFLQLEKAKFYQ AEDFFIQGIFNFPFHIELDFFETIQTIYDEYYETVIFFANHNLNINETSQVLHIHRNTLN YRLKRIHELTGMDPKVWQDFWKLFYYFAYCFKERFEK >gi|307679028|gb|GL456769.1| GENE 61 66603 - 67505 1058 300 aa, chain + ## HITS:1 COG:lin0768 KEGG:ns NR:ns ## COG: lin0768 COG1597 # Protein_GI_number: 16799842 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Listeria innocua # 1 290 1 289 309 268 48.0 7e-72 MKKAVLIVNPSSGGEKAKEFETLAEEKLKQLFDEVVVKQTEKGGDAEQFAREAAESHFDS VFVMGGDGTVNEGISGLAEQAYRPKFGFFPLGTVNDLARALNLPMDPEEAIQQLDLEKTS ALDVGKINDDYFMNVVAIGTIPESINDVDVEQKTKLGKLAYFISGAKHLANAQTYPFHLS LDQKEQTIESSTVLVGLTNSIGGFETLLPEAQVDDGKLHLVYLKDQSLWDAVKAVPDLLK GVDQSTDNLVYLTFKEGTISLENQEELTTNVDGDEGAALPITLEILPKHLTAYCGEEQTK >gi|307679028|gb|GL456769.1| GENE 62 67649 - 68359 763 236 aa, chain + ## HITS:1 COG:L62955 KEGG:ns NR:ns ## COG: L62955 COG3597 # Protein_GI_number: 15672246 # Func_class: S Function unknown # Function: Uncharacterized protein/domain associated with GTPases # Organism: Lactococcus lactis # 32 236 12 216 217 238 58.0 5e-63 MRRKKHKNKKKQELFEEIEKQELAEQETKQLNEEIEDPEFRSFFQDVLKKFPQKTSTAIM NAFATSKGKAEQLVTNSQTQLDKVFDEFLAGVSPDVKKKSHQTIHFAALSAAIIGFSPIP FSDAFLLVPVQLTMMSRLHKIFGQSWSESLGKSLTKELVVVSLGKSAVGNILKVIPVVGT VTGGMVNASVAVAITEALGWVTVKMLNDGVDIFDDVMSFKGQFSTLFKAIQNAKKK >gi|307679028|gb|GL456769.1| GENE 63 68643 - 70352 2113 569 aa, chain - ## HITS:1 COG:SPy0184_1 KEGG:ns NR:ns ## COG: SPy0184_1 COG4176 # Protein_GI_number: 15674389 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 5 305 8 306 306 368 64.0 1e-101 MNKYQLPVASWVESFTDWLTSTFAGLFSFLQTIGQSVMDNITALLTAVPPLVLIVLLTIA AFFISNKKIGLSLFTFIGLMFIYNQNLWNDLMSTVTLVLLSSVISIIIGVPLGILMAKSE KAKSIITPILDFMQTMPGFVYLIPAVAFFGIGMVPGVFASVIFALPPTVRFTNLGIRQVP NELVEAADSYGSTGWQKLFKLELPLAKNTIMAGVNQTTMLALSMVVIASMIGAPGLGRGV LSALQRAQVGNGFVNGVALVILAIIIDRFTQHLNNKKAAPKAAGATSKKKKYGIIAAVVV IVAGLVGASIFTTTNDKQISLSYVEWDTEVASTHVVAEVLKDMGYDVKTTPLDNAIMWES VAKGETDAMVGAWLPGTHAEQYKQYKDKLDDLGENLKGAKLGIVVPSYMDVDSIEDLSDQ AGKKITGIEPGAGVVAAAEKTKEAYPNLKDWSVETSSSGAMTVALGQAIKNNEDIVITGW SPHWMFAKYDLKYLADPKGTMGGEEAIHTMARQGLKEDQPEAYKVLDNFHWTTKDMESVM LEINEGKDPQEAARDWVDSHKDQVAEWKK >gi|307679028|gb|GL456769.1| GENE 64 70345 - 71535 1470 396 aa, chain - ## HITS:1 COG:L74195 KEGG:ns NR:ns ## COG: L74195 COG4175 # Protein_GI_number: 15673434 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport system, ATPase component # Organism: Lactococcus lactis # 1 389 1 391 408 550 74.0 1e-156 MPKVKVNHLTKIFGKKTKPALEMIRANKSKTEILEKTGATVGVYDVNFEVEEGEIFVIMG LSGSGKSTLIRLLNRLIEPTSGNIYIDGQDISSLDKEGLREVRRNKMSMVFQNFGLFPHR TILENTEYGLEIRGVPKEERQAKAEKALENSSLIAFKDQLPSQLSGGMQQRVGLARALAN DPEILLMDEAFSALDPLIRREMQDELLDLQENVKKTIIFITHDLNEALRIGDRIALMKDG QIMQIGTGEEILTNPANEYVRTFVEDVDRSKVLTAQNIMVPALTTNIEIDGPTVALKRMR QEEVSMLLAVDKKRQLKGVVRAEKALEARKNGTSLVECVDPEIQTIDKDMLVNDIFPLIY DAQTPLAVTDNGKLLGVVIRGSVLEALAETEVNEHE >gi|307679028|gb|GL456769.1| GENE 65 71736 - 72368 633 210 aa, chain - ## HITS:1 COG:SPy1259_1 KEGG:ns NR:ns ## COG: SPy1259_1 COG2188 # Protein_GI_number: 15675218 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 149 1 149 149 109 36.0 4e-24 MASKKISLTKPKYQQIAVDVAEKIAEGKLHVGDKIHARSTLANQYQVSPETARKAIIVLV DLEIVKAKHGSGFYVASKEKAQDFVTQYQDVQTIAEIKEELLDSVAKQKEELTHFSSILD TLVEQTKRFDSFNPMNPYSLVLTEEAAYLEATISEMNFWQNTSATIIAIKHKEELLVSPG PYAKISLNDTLYFVGHDESTLQRVQNFFYP >gi|307679028|gb|GL456769.1| GENE 66 72383 - 74329 2078 648 aa, chain - ## HITS:1 COG:lin2179 KEGG:ns NR:ns ## COG: lin2179 COG0488 # Protein_GI_number: 16801244 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Listeria innocua # 1 644 1 650 650 669 57.0 0 MILLQANQVARHFGSETLFENIHLEIATKSRIALVGRNGAGKSTFLKIIAGIDAPDSGTI AKNKTATLGYLAQNTGLESDKTVWEEMTKAFADILEMEQRMRELETKISEMEPTTSVYEG ILKEYDQLQHTFSEKNGYGYENEIRSVLHGFGFDESFYTKDIQTLSGGQKTRLALARMLL QKPDILILDEPTNHLDIETLSWLESYLPSYAGALLIVSHDRYFLDKVVNEVYELSRKKMT HYKGNYSKYLELKAEQLASEWKAYEKQQEEINKLEDFVAKNLVRASTTKRAQSRRKVLEK MDRLDRPQGDEKSAHFLFDSEKVSGNVVLQVEDAAIGYDQEHILSEPIHLDIRRKEAIAL VGPNGIGKSTLLKSIIDRIPFIKGSKTFGTNVSVGYYDQEQANLHGNKTVLAELWDEHPT TPEKEIRSILGGFLFSGDDVEKTIPLLSGGEKARVALAKLAMDRDNFLILDEPTNHLDID NKEVLENALIDYEGTILFVSHDRYFINRIATKVVELSEKGSKLYLGDYDYYLEKKQEEEE IAALLANEEAAKKPEPVTAKNTFYQNKEQQKLLRTLQRKITQVEENLAQLDTTIAQLEAQ MSQPDILENHVELLALNQQLDDARQQQDELLEQWENFSLELEEMENNN >gi|307679028|gb|GL456769.1| GENE 67 74543 - 75193 865 216 aa, chain + ## HITS:1 COG:lin2178 KEGG:ns NR:ns ## COG: lin2178 COG2344 # Protein_GI_number: 16801243 # Func_class: R General function prediction only # Function: AT-rich DNA-binding protein # Organism: Listeria innocua # 6 207 8 209 215 246 60.0 2e-65 MKDQVIPKATARRLPLYYRYLRMLHDTGKNKVSSTELSEAVQVDSATIRRDFSYFGELGK RGYGYDVENLMNFFAKTLNEDELTNVALIGVGNLGSALLKYKFHQSNSIRVSCAFDVNED IVGRIVDGIPVYPMEDMMEQIRVQQIEVAILTIPARKAQEVVNKLAEAGVKGILNFTAAR LVAPPEVLIQNVDLTNELQTLIYFLHHDNELIDEEE >gi|307679028|gb|GL456769.1| GENE 68 75236 - 75889 721 217 aa, chain - ## HITS:1 COG:BS_ydiL KEGG:ns NR:ns ## COG: BS_ydiL COG1266 # Protein_GI_number: 16077668 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Bacillus subtilis # 3 209 1 221 244 109 38.0 4e-24 MTLRKSSLFILVTYIIAFFGPLLFSGISPNAAINVTTALYIIGALVMIGIFLKTTEPSPL EETATLKSPIFIFLLGVSGIFIAMLIQGVTFAIEVAITGEQATSQNTQAIVAVILANPLF ILATTIGGPIMEEFVFRYAFIHLIQPFTNFWIAATVSSAIFSLAHADGHFFVYFFMGFFF ALLYKQTGKIWTSIIAHCGMNTIVIIVQLLLHNGAIQ >gi|307679028|gb|GL456769.1| GENE 69 75908 - 76084 212 58 aa, chain - ## HITS:1 COG:no KEGG:EF2636 NR:ns ## KEGG: EF2636 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 58 1 58 58 76 100.0 4e-13 MKQRLLTALIATFVYFVIANLGNLVFSVTEGIVSTLWESLFFFLFVFLLLGYRNNRKK >gi|307679028|gb|GL456769.1| GENE 70 76317 - 76601 402 94 aa, chain + ## HITS:1 COG:lin2175 KEGG:ns NR:ns ## COG: lin2175 COG0234 # Protein_GI_number: 16801240 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Co-chaperonin GroES (HSP10) # Organism: Listeria innocua # 1 91 1 91 94 107 68.0 7e-24 MLKPLGDRVVIRVAKEEEKTVGGIVLASVAKEKPQTGEVIAVGEGRVLENGTKVPMEVKI GDTVMFEKYSGTEVKYEGVEYLIVSAKDIIATVE >gi|307679028|gb|GL456769.1| GENE 71 76659 - 78284 1605 541 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 [Haemophilus parasuis 29755] # 2 541 3 547 547 622 59 1e-177 MAKEIKFAEDARAAMLRGVDVLADTVKVTLGPKGRNVVLEKSFGSPLITNDGVTIAKEIE LEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGLKNVTAGANPLGIRRGIE LATKTAVEELHNISSVVDSKEAIAQVAAVSSGSEKVGQLIADAMEKVGNDGVITIEESKG IETELDVVEGMQFDRGYLSQYMVTDNDKMEAVLENPYILITDKKISNIQDILPLLEQILQ QSRPLLIIADDVDGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGTVIT DDLGLELKDTTIENLGNASKVVVDKDNTTIVEGAGSKEAIDARVHLIKNQIGETTSDFDR EKLQERLAKLAGGVAVVKVGAATETELKELKLRIEDALNATRAAVEEGMVSGGGTALVNV IGKVAALEAEGDVATGIKIVVRALEEPIRQIAENAGYEGSVIVDKLKNVDLGIGFNAANG EWVNMVEAGIVDPTKVTRSALQNAASVSALLLTTEAVVADKPEPAAPAPMMDPSMGMGGM M >gi|307679028|gb|GL456769.1| GENE 72 78587 - 79306 674 239 aa, chain + ## HITS:1 COG:SA0017 KEGG:ns NR:ns ## COG: SA0017 COG0745 # Protein_GI_number: 15925723 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Staphylococcus aureus N315 # 63 237 65 231 235 77 32.0 2e-14 MEKYTIGVVPLTIETKEYCQNWFVSNQVECQIIQGTNILLHLHHIDGLVIEVTDHQQVNT CCELLMTIRKQSDLPIWLFSRTEVISKVNRIIYLQLGADGVFDHSYDRQECMLSMSNLLQ RVKRRFYPKLAIANEEQTVTKNLSERLYLIAPNLSVCLGSGEEILLTKLEFFTIEYLYKH AGQTITYEELYKNVWKDTANERKYRVANVIFHLRKKIEQDVNKPQYIKTIRSKGYMLTV >gi|307679028|gb|GL456769.1| GENE 73 79330 - 80040 785 236 aa, chain + ## HITS:1 COG:no KEGG:EF2629 NR:ns ## KEGG: EF2629 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 236 1 236 236 234 96.0 2e-60 MWQFLTKNNEDEEYEKMPDFENEQSMKAQPKVTEEASFDDEVVYAKEQAAKVKQVQQQVP TELSEESFSFVEKLEEENQLYQQSIKKLTEQLLMRTNEVEALQKQVVEKDVQLKQLKETL SDKEATITSLQKQLSEEKMQQRQTSEENLDTAVTLSQKEIGEVLLEAKRQAKETIAQANQ QVATVHEEMEQRLATLTRMKQVAREYQAYCEQMLTIKNESTGTYQQIEQLLAEIKR >gi|307679028|gb|GL456769.1| GENE 74 80057 - 81604 1228 515 aa, chain + ## HITS:1 COG:SA2437_1 KEGG:ns NR:ns ## COG: SA2437_1 COG1705 # Protein_GI_number: 15928230 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Staphylococcus aureus N315 # 24 345 185 475 502 150 36.0 7e-36 MKKRKARYLKLVCIGILGIYAGASYYNSEPLIAQEETETRDESRQLSLEEKRADQANQDQ GTLTSSTLNETIISSSEQQESSTQNYSSDHPENNVEPLESENSLPPQEKPIASTKPTESL QSEQPASEERKALTEKPPHNQEPQNSTLTEKTKEPLVHSEIDNSQEKEKQAGIQQQAEAN FVVQENASTSEFIRKIGEEARVIGQQHDLYASVMIAQAILESGSGNSALAAPPNYNLFGI KGAYQGQSVSFPTQEDDGKGKMTTIHADFRQYPSYKESLTDYSKLIINGLAGNPTFYHGV LKANTTNYQQATKFLTGRYATDTYYDKKLNALIETYQLTEYDQEKKKPVVTNLAEEKKPS FDKEAVKEQLKKEAVIYEVSKGDSLATISQTFGVSATAILKQNSKTQEMFYIGQKITIPQ HTAATSLEPKEQALLQSLIISKSVTNALKTAEQSNGKANDSKTESTEYYEVKRGETLAKI AKKTGYSLTALKQTNDLTYSVLTEGQTIALPKLKD >gi|307679028|gb|GL456769.1| GENE 75 81822 - 82232 259 136 aa, chain + ## HITS:1 COG:lin2694 KEGG:ns NR:ns ## COG: lin2694 COG2246 # Protein_GI_number: 16801755 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 11 135 21 145 145 100 46.0 9e-22 MKELFRKYREVLAYLFFGGATTVVNLVVFFVCQNVLGLDYKISNTISWFLSVLFAFFTNK YWVFASKHESIAGFFKEMGLFYWYRILSFVADMGLMILLIDGIHFSSFWAKMITQVVVVI LNYFFSKFFIFKEKEV >gi|307679028|gb|GL456769.1| GENE 76 82310 - 83794 1696 494 aa, chain + ## HITS:1 COG:L107468 KEGG:ns NR:ns ## COG: L107468 COG1488 # Protein_GI_number: 15673082 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid phosphoribosyltransferase # Organism: Lactococcus lactis # 1 483 6 487 495 771 76.0 0 MDYTYADDSLTLHTDMYQINMMQTYWELGRADLHAVFECYFREMPFNHGYAIFAGLERLV NYLENLTFTESDIAYLREVEEYPEDFLTYLANFEFKCTVRSALEGDLVFNNEPLIQIEGP LAQCQLVETALLNMVNFQTLIATKAARIKSVIGDDPLLEFGTRRAQELDAAIWGTRAAYI GGADATSNVRAGKIFGIPVSGTHAHSLVQSYGNDYEAFMAYAKTHRDCVFLVDTYDTLKA GVPSAIRVAREMGDKINFLGVRIDSGDMAYISKRVREQLDEAGFTEAKIYASNDLDENTI LNLKMQKSKIDVWGVGTKLITAYDQPALGAVFKLVSIEGEDGQMKDTIKLSSNAEKVTTP GKKQVWRITRKSDKKSEGDYVTLWNEDPRQEEEIYMFHPVHTFINKYVRDFEARPVLQDI FVEGKRVYELPTLDEIKQYAKENLDSLWEEYKRDLNPQKYPVDLSTDCWNHKMNLLEKVR KDVKHLTETVNKEA >gi|307679028|gb|GL456769.1| GENE 77 83797 - 84624 1146 275 aa, chain + ## HITS:1 COG:SP1420 KEGG:ns NR:ns ## COG: SP1420 COG0171 # Protein_GI_number: 15901273 # Func_class: H Coenzyme transport and metabolism # Function: NAD synthase # Organism: Streptococcus pneumoniae TIGR4 # 3 275 2 274 274 416 76.0 1e-116 MTTLQEKIIQELGVLPTIDPKEEVRKSIDFLKAYLTKHPFLKTFVLGISGGQDSTLAGRL AQLAMTEMREETGDMSYQFIAIRLPYGEQADEADAQAALAFIQPDVSLRVDIKPAVDAMV GSLENAGVQISDFNKGNMKARQRMITQYAVAGENAGAVIGTDHAAENVTAFFTKYGDGGA DILPLFRLNKRQGKALLKELGAPEALYLKIPTADLEDDKPLVADEVALGVTYDAIDDYLE GKKVSETDQQTIENWYKKGQHKRHLPITIFDDFWK >gi|307679028|gb|GL456769.1| GENE 78 84817 - 86622 2035 601 aa, chain + ## HITS:1 COG:L96595 KEGG:ns NR:ns ## COG: L96595 COG2217 # Protein_GI_number: 15672077 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 1 598 1 592 593 554 51.0 1e-157 MKHVTKLGITIITGVLALLFEFILHQPNWAYGIILITGSVMALMMFWEMIQTLREGKYGV DILAITAIVATLAVGEYWASLMILIMLTGGDSLEDYAAGKANQELKSLLDNSPQKAHRLN GENLEDVSVEEINVGDELVVKPGELVPVDGLVKTGTSTVDESSLTGESKPIEKNPGDELM SGSVNGDGSLKMVAEKTVADSQYQTIVNLVKESAARPAHFVRLADRYAVPFTLVAYLIAG VAWFVSKSPTRFAEVLVVASPCPLILSAPIALVAGMGRSSRHGVVIKSGTMVEKLASAKT IAFDKTGTITQGQLSVDQVQPINAEITAAELVGLAASVEQESSHILARSIVAYARKQDVP LKNITDLAEVSGAGVKAFVDGAEIRVGKKNFVTQESQATEKIDKTTIHISRNGTYLGRIT FTDTVRPEAKETMEKLHQLHLQRILMLTGDQESVAETIAAEVGITEVHGECLPQDKLTIL KELPKENHPVIMVGDGVNDAPSLAAADVGIAMGAHGATAASETADVVILKDDLSKVSQAV EIAQDTMKIAKQSVLIGIFICVLLMLIASTGIIPALIGAMLQEVVDTVSILSALRARRIG K >gi|307679028|gb|GL456769.1| GENE 79 86714 - 86998 405 94 aa, chain + ## HITS:1 COG:L86826 KEGG:ns NR:ns ## COG: L86826 COG3592 # Protein_GI_number: 15672668 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 90 15 104 104 117 62.0 4e-27 MKGNQIDGQPVTEEQLLKEGYRKYTGEGIDIFYNKDICEHIGNCVRGNPEVFEVGRKPWI IPDNGSVENDMIVVDSCPSGALKYIRKAGNEYAN >gi|307679028|gb|GL456769.1| GENE 80 86988 - 87263 408 91 aa, chain + ## HITS:1 COG:lin0181 KEGG:ns NR:ns ## COG: lin0181 COG2388 # Protein_GI_number: 16799258 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Listeria innocua # 1 88 1 88 92 90 55.0 5e-19 MQIKEENNRFALYNDENQEIGEMTWSDAGESMMIIDHTFVDPTYRGQKLAEKLVLAGVEK ARKEHKKIIPLCPFAKKEFDTKPEYGDVLRK >gi|307679028|gb|GL456769.1| GENE 81 87431 - 87667 374 78 aa, chain + ## HITS:1 COG:L0338 KEGG:ns NR:ns ## COG: L0338 COG1314 # Protein_GI_number: 15672923 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecG # Organism: Lactococcus lactis # 1 78 5 82 82 72 46.0 2e-13 MYNLILTLVIILSVLIVITVMMQPSKQNSAASAFTGGADKLFGKQKARGFEAVMQRSTAV LGAIWMILLFVLAFLSSK >gi|307679028|gb|GL456769.1| GENE 82 87822 - 88586 812 254 aa, chain + ## HITS:1 COG:BH3554 KEGG:ns NR:ns ## COG: BH3554 COG1647 # Protein_GI_number: 15616116 # Func_class: R General function prediction only # Function: Esterase/lipase # Organism: Bacillus halodurans # 4 252 2 248 248 164 34.0 1e-40 MAKKINLPKPLFSEKGKRAVLLLHAYSGSSNDVRMLSRRLEKENYTVYSPNFSGHGTLVP EDILDQTTEQWWQDTQEAVAFLRERGYQEIAIFGLSMGGIFSMHALTEQLTGLIGGGFFC SPIYPVENKVPENFVLYAENVMKIAEVPAEEQQSRLQSIEQRVKQQLGAIETIASQTADK LNKIHAPLFLAQAGKDEMIEPMGVYQTAQALTQARVTLQWYPNSGHVITVSGEHKQLEQD VVQFLATLPWNEEK >gi|307679028|gb|GL456769.1| GENE 83 88586 - 90955 1620 789 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 [Clostridium acetobutylicum ATCC 824] # 6 746 3 726 730 628 44 1e-179 MTKQTIKEQILHFMESQKKKSFSMEEIAQGLNLEKSSDFKILVQTIAQMEREKSVSFNKK GKVLLPMKDLLIEGTFRANERGFGFVTIDPEEPDVYIPKEATNFAMDGDTVLIDVIQHAD PFSDRGAEGKVKEIKERAVSQVVGEFVAYSEEEMAEMGLYGYMIPKDKKLNQYTVSIAPE GIKPVDGSIVIAEITYYPDQEYPTSMEGLVKQVIGHKNDPGMDILSIVVAHGIPTAFPDE VLAEADQVPETIAESDLVGRRDLRDQLIVTIDGEDAKDLDDAVTVQKLANGNFFLGVHIA DVSYYVTEGSQLDMEAYERGTSVYLTDRVVPMIPQRLSNGICSLNPHVPRLTMSCEMEIT PEGEVISHEIFQSVIQTTERMTYTAVNEILEEQKPETLERYKELVPMFKEMGELHHILEE MRMRRGAISFEDREAKVLVDENGHPQDILLRTRGVGERLIESFMLAANETVARHYHDLKL PFIYRIHEQPKEEKMQRFFDFAAVLGILVKGTKENISPKDLQKVLEQVENKPEEVVINTM LLRSMQQAKYSEDNYGHYGLAAEYYTHFTSPIRRYPDLIVHRLIRSYSQDQSEKNQEKWN EALPEIANHSSSMERRAVDAEREVDAMKKAEFMVDKVGETYDGIISSVTKFGIFVELPNT IEGLIHVNNLKQDYFHFIENHMALVGERTGMTLKIGQKVQIRVEKADPETREVDFELISA EEVAPVEGPKGRKKGKANSSTRSNNQRRNKKDESFDGKKKKNKKKGKGKKQPFYKEAMKQ KNKKGKKKK >gi|307679028|gb|GL456769.1| GENE 84 90968 - 91432 647 154 aa, chain + ## HITS:1 COG:lin2542 KEGG:ns NR:ns ## COG: lin2542 COG0691 # Protein_GI_number: 16801604 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: tmRNA-binding protein # Organism: Listeria innocua # 1 154 1 154 154 209 72.0 2e-54 MPKGEGKLIAQNRKARHDYSIIDTVEAGLVLQGTEIKSIRNGRINLKDGFARIRNGEAFL YNVHISPYEQGNIFNHDPLRTRKLLLHKKQINKLIGETKNTGITLVPLKVYIKDGYAKVL IGLAKGKKQYDKREDLKRKEVDRQISRTLKNNRR >gi|307679028|gb|GL456769.1| GENE 85 91735 - 92454 630 239 aa, chain + ## HITS:1 COG:lin2679 KEGG:ns NR:ns ## COG: lin2679 COG0356 # Protein_GI_number: 16801740 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit a # Organism: Listeria innocua # 1 238 1 237 238 225 52.0 6e-59 MEEKKLLFNIGPIWFDGTIVLMVLLTCIIVFAFVYACTRNMKLRPKGKQTVIEWLVDFIR GIITDNLPRKEVSNFHLMAFTLFMFVLVSNILGLVTKIVVGDDLSVWKSPTADPIVTLTL AMMMIVLTHFFGMKRFGFKGYLVNSYLRPVGFLLPVKLMEEFTNLLTLGLRLYGNIFAGE VLLGLIAGTVASVGLWVIPLAIPLEMIWVAFSIFIGCIQAFIFVTLSMVYMSHKIETEE >gi|307679028|gb|GL456769.1| GENE 86 92503 - 92724 427 73 aa, chain + ## HITS:1 COG:SA1910 KEGG:ns NR:ns ## COG: SA1910 COG0636 # Protein_GI_number: 15927682 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K # Organism: Staphylococcus aureus N315 # 4 69 1 66 70 60 59.0 1e-09 MEGLNFIAAAIAIFGSAIGAAIGNGQVISKTIESMTRQPEMSGQLRTTMFIGVALIEAVP ILGVVVSLLLLFR >gi|307679028|gb|GL456769.1| GENE 87 92862 - 93392 748 176 aa, chain + ## HITS:1 COG:L11208 KEGG:ns NR:ns ## COG: L11208 COG0711 # Protein_GI_number: 15673750 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit b # Organism: Lactococcus lactis # 10 171 7 168 168 122 46.0 2e-28 MLLTTLVVGETAPSTTLGTMIVVSGAFLILMLLLKKYAWGAIVDILTQREEKIANDLDSA EQSRVAAAKMEKERQQQLLSSRSEAAEIIKNAKESGEQTRQKTLKETTAEVTRLREKART DISQEREEALSSVKNEVADLSLQIAAKILNKELTPDAHEALIDSYIESLGKANETR >gi|307679028|gb|GL456769.1| GENE 88 93379 - 93921 719 180 aa, chain + ## HITS:1 COG:BH3757 KEGG:ns NR:ns ## COG: BH3757 COG0712 # Protein_GI_number: 15616319 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) # Organism: Bacillus halodurans # 3 179 1 178 183 77 28.0 9e-15 MKLDKYTVGKRYGKALFELAVEKNQAEAIYQELLTLREVYHQVPGIGDILSDDRLEPYEK DSIMEKLVTGFSEMMQNFLRVVYEYRRMYDLLLMIDEYERRYDEHQGLILGSVTTAIPLS KEQHQAMEEKAAQLLGYEQAHLVNLIDPSIVGGVVIEANHQVIDGSIRKQLEHMQQKLLK >gi|307679028|gb|GL456769.1| GENE 89 93950 - 95506 2258 518 aa, chain + ## HITS:1 COG:SPy0758 KEGG:ns NR:ns ## COG: SPy0758 COG0056 # Protein_GI_number: 15674806 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, alpha subunit # Organism: Streptococcus pyogenes M1 GAS # 1 496 1 496 502 808 82.0 0 MAIKAEEISALIKEQIENYQQQLAVEEVGTVTYVGDGIARAHGLENAMSGELVEFSNGSY GMAQNLETNDVGIIILGDFETIREGDKVQRTGKIMEVPVGEALIGRVVNPLGQPLDGLGE IKTDKTRPVEATAPGVMQRQSVAEPMQTGLKAIDALVPIGRGQRELVIGDRKTGKTSIAI DTIINQKGQDVICIYVAIGQKESTVRNQVETLRKFGALDYTIVVTAGASQPAPLLYIAPY AGTAMGEEFMYNGKHVLIIFDDLSKQAVAYRELSLLLRRPPGREAYPGDVFYLHSRLLER AAKLSDELGGGSMTALPFVETQAGDISAYIPTNVISITDGQIFLESDLFYAGTRPAVDAG LSVSRVGGSAQIKAMKKVAGTLRLDLASYRELEAFTQFGSDLDAATQAKLNRGRRTVEIL KQKLHAPLPVEKQVLILYALTHGFLDSVSVDKILHFEQDLFDYFDGKHADLLETIRTTKD LPDTDALDAAITEFSEMFAAANNSGDSAKEALEKIDNA >gi|307679028|gb|GL456769.1| GENE 90 95522 - 96430 1108 302 aa, chain + ## HITS:1 COG:SP1509 KEGG:ns NR:ns ## COG: SP1509 COG0224 # Protein_GI_number: 15901356 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, gamma subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 302 1 292 292 354 65.0 1e-97 MGASLNEIKQRIASTKKTSQITKAMQMVSAAKLTKSEGASKSFQEYSSKIRSVVTHLVAA QLSELRETEQSSLSEGSYHVMLAQRPVKKTGYIVITSDKGLVGGYNSSILKQTMSMIQED HDSNKEYALIAIGGTGADFFKARGIDVSYELRGLTDQPTFEEVRKIVTTATTMYQNEVFD ELYVCYNHHVNSLTSQFRVEKMLPITDLDPSEATSYEQEYLLEPSPEAILDQLLPQYAES LIYGAIIDAKTAEHAAGMTAMKTATDNAQNIISDLTISYNRARQGAITQEITEIVAGAAA LE >gi|307679028|gb|GL456769.1| GENE 91 96512 - 97918 1952 468 aa, chain + ## HITS:1 COG:SP1508 KEGG:ns NR:ns ## COG: SP1508 COG0055 # Protein_GI_number: 15901355 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, beta subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 468 1 468 468 796 87.0 0 MSSGKIVQVIGPVVDVEFSLDQSLPDINNALVVYKNGEAKQKVVLEVALELGDGVIRSIA MESTDGLQRGMEVIDTGKSISVPVGKDTLGRVFNVLGDTIDLEAPFPADAERSGIHKKAP AFDELSTSNEILETGIKVIDLLAPYLKGGKVGLFGGAGVGKTVLIQELIHNIAQEHGGIS VFTGVGERTREGNDLYYEMKDSGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVE GQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSITSI QAIYVPADDYTDPAPATAFAHLDATTNLERKLTEQGIYPAVDPLASSSSALAPEIVGEEH YEVATEVQHILQRYRELQDIIAILGMDELSDDEKVLVGRARRVQFFLSQNFNVAEQFTGQ PGSYVPVAETVRGFKEILEGKHDNLPEEAFRSVGKIEDAIEKAKQLNY >gi|307679028|gb|GL456769.1| GENE 92 97935 - 98354 612 139 aa, chain + ## HITS:1 COG:SPy0761 KEGG:ns NR:ns ## COG: SPy0761 COG0355 # Protein_GI_number: 15674809 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) # Organism: Streptococcus pyogenes M1 GAS # 1 137 1 137 138 149 60.0 1e-36 MDSLTVNVVTPNGLVYDHHAKIVVAKTTDGEIGILPKHAPIIVPLAIDEVRIKRTDSDTH VDWVAVNGGIMEVRDNVVSIIADSAERERDIDVPRAERAKQRAERLIEEAKAKDDRDQLR RATVALHRAINRINVSKHG >gi|307679028|gb|GL456769.1| GENE 93 98543 - 98779 149 78 aa, chain + ## HITS:1 COG:no KEGG:EF2606 NR:ns ## KEGG: EF2606 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 78 1 78 78 112 100.0 6e-24 MQYYGVDAIVRIVSHLMFIYISFWALQSLRIEQFFKTQFTPQIRMLMVFFAIAIGYTVSS FALELIALCRNLFIVYFP >gi|307679028|gb|GL456769.1| GENE 94 98882 - 100183 1751 433 aa, chain + ## HITS:1 COG:lin2670 KEGG:ns NR:ns ## COG: lin2670 COG0766 # Protein_GI_number: 16801731 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Listeria innocua # 1 425 1 422 430 526 70.0 1e-149 MEQIIVHGGNTKLEGTVKIEGAKNAVLPILAATLLAEEGVTTLKNVPILSDVFTMNQVIK HLNVAIDFDEDANEVTIDATQPLGIEANYEYVSKMRASIVVMGPLLARNGHAKVAMPGGC AIGKRPIDLHLKGFQALGAKIIQKNGYIEAIADELIGNTIYLDFPSVGATQNIMMAAVRA KGTTIIENVAREPEIVDLANILNKMGANVIGAGTETMRIEGVDKLHAVEHSIVQDRIEAG TFMVAAAMTEGNVLIEEAISEHNRPLISKLTEMGAIIEEEENGIRVIGPKHLKPTDVKTM PHPGFPTDMQAQMTAIQMFAEGTSIVTETVFENRYQHLEEMRRMNADLKIDGNIAVINGG NELQGAAVEATDLRAAAALILVGLRANGITRVSNLKYLDRGYYEFHKKLQKLGANVERVN DEKIEEKQATTVI >gi|307679028|gb|GL456769.1| GENE 95 100197 - 100373 299 58 aa, chain + ## HITS:1 COG:no KEGG:EF2604 NR:ns ## KEGG: EF2604 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 58 1 58 58 82 100.0 6e-15 MSSFRYILVTLLKILVVISLVIILFVVGTMIGYGLIGNGNPMDVFDEKIWTHIMNFFK >gi|307679028|gb|GL456769.1| GENE 96 100501 - 100869 474 122 aa, chain + ## HITS:1 COG:lin0546 KEGG:ns NR:ns ## COG: lin0546 COG3731 # Protein_GI_number: 16799621 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIA # Organism: Listeria innocua # 15 117 17 116 116 73 35.0 1e-13 MQATVTEIGKHAIDDSEKMIILFGETATDTLKQHAVIQSFPEKDQVTLAEGDHLKIGDTN YTITKVGSFANSNLQSIAHSTLIFADAPTDEDDVIRNGVYLTPHQLPKITIGTTIDYLVN GA >gi|307679028|gb|GL456769.1| GENE 97 100874 - 102043 1438 389 aa, chain + ## HITS:1 COG:SP1505 KEGG:ns NR:ns ## COG: SP1505 COG0628 # Protein_GI_number: 15901352 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Streptococcus pneumoniae TIGR4 # 11 379 10 378 388 351 51.0 1e-96 MDKKQTTDKRLSWFWRWFLNNQVVTALLIVLLVLLIILTFTKVSYLFKPVWQFFGVVGLP VIMAGILYYLLNPIVDYLEKKQISRVWSIIGLFILIVALLIWGGIVIVPKIREQSVSFVN HFPQYIDTIDQKSQEILSDPLFAQFREQLEAAGDKVVSSLGTIIKNVSTFTVQGIGNFFG AVATIFVAIITMPFILFYLLKDGKNLAPYLMKFLPVKMRKPTLKVLAEVNDQVSSYIRGQ LTVAFAVAIMFMIGFSVIGLDYAVTLGIAAGFLNLIPYLGSFLAMIPAVFLGIVSGPALL IKVLIVFAIEQTVEGRFISPLVLGSQLSIHPVTILVVLLTSGKLFGIVGVILGIPVYAAA KVIITHIFEWYQIVSGLYDEDKPDQQEST >gi|307679028|gb|GL456769.1| GENE 98 102105 - 102731 933 208 aa, chain - ## HITS:1 COG:BS_yvaB KEGG:ns NR:ns ## COG: BS_yvaB COG1182 # Protein_GI_number: 16080407 # Func_class: I Lipid transport and metabolism # Function: Acyl carrier protein phosphodiesterase # Organism: Bacillus subtilis # 1 208 1 211 211 191 44.0 6e-49 MSKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLS AWGALRAGAAFETLSENQQQKVARFNELTDQFLSADKVVIANPMWNLNVPTRLKAWVDTI NVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGKDFASQYIKAILNFIGVEQVDGLFI EGIDHFPDRAEELLNTAMTKATEYGKTF >gi|307679028|gb|GL456769.1| GENE 99 103033 - 103875 885 280 aa, chain + ## HITS:1 COG:lin2530 KEGG:ns NR:ns ## COG: lin2530 COG3711 # Protein_GI_number: 16801592 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Listeria innocua # 1 274 1 274 285 246 45.0 4e-65 MRIEKVLNNNVVLSRNEQGEEIVYMGRGLAFQKKIGDTINPDYVEKEFVLKDSAMAGQFQ QLFEDVPTKEVEVVKQIVDLAETTLAIELSSNIYLTLTDHIHYALLRAKEGIDIPNPLVF ETRKFYPKEFEIAKQALAIIAEKLGVQFSENEAGFIAFHIVNAEQGNGNMEVTMEATKMV RDILTIISRYFGQVFDEDSLNYQRIVTHLQYFAQRYLKQEAHDDEDEFLFALVQGKYPKA FQAVQRINEYLLKSYDRPIDQAEMIYLTIHIQRVVNDKKA >gi|307679028|gb|GL456769.1| GENE 100 104038 - 105918 2269 626 aa, chain + ## HITS:1 COG:BH0296_2 KEGG:ns NR:ns ## COG: BH0296_2 COG1263 # Protein_GI_number: 15612859 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Bacillus halodurans # 100 455 2 355 368 292 46.0 2e-78 MSKNQEIAARVLKAVGGEGNVNSVVHCATRLRFKLKDENKADTAALNADPDVIQVVQSAG QYQVVIGSHVSDVYKDLMANSGIGNDSDNREKESGGNIFNRLIDIISSIFTPFLGAMAGA GVLKGFLTLAVTMGWLADTSGVYLVLFSIADGLFTFLPIMLAFTAAKKFNTNPFLAVALA MALVHPSITALAGKTISFAGLPVIIGPSGYTSSVLPIILAVFAQSYVERFFKKVIPSFLQ IICVPLAVFLIMAPVTFLAIGPIGTVIGDWLGQGYNAIYAFSPIIAGLLMGSLWQVLVMF GMHWGFVPIMMLNLTQGGDTMVPMLLPAVIAQGGAALAVFFLTKNVKLKGLALSSSITTI FGITEPTVYGVTLPLKKPFIAACIGGGIGGAFVAMNHVKNFTFGLVSMLSLPGFIPAETK DTAPMITGAIGAGIAFIIAFVLTFVLRFEDQPNPETATEKTETDKMVAPVKTNQEDKIIL ASPLQGEILPLEKVQDPVFASGALGKGVAIEPTEGKLYAPADGEITTLFPTGHAVGLTTT EGVELLMHIGMDTVELDGKGFELSVKQGDSVKKGDLLVTFDIAAIKEAGYPVVTPIVVTN TSDYLDVLDMNQTDVLHGEDFLAIIK >gi|307679028|gb|GL456769.1| GENE 101 105943 - 107388 1722 481 aa, chain + ## HITS:1 COG:L89194 KEGG:ns NR:ns ## COG: L89194 COG2723 # Protein_GI_number: 15673441 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Lactococcus lactis # 7 480 3 478 478 678 70.0 0 MTTTTKFPKGFLWGGATAANQLEGAYLADGKGLSVADAMPGGKQRFAILGDEAFDWTIDE TKYRYPNHTGIDHYDRFKEDIALFAKMGFKCYRFSIAWSRIFPQGDETQPNEAGLKFYDA VIDECLNYNIEPVITISHYEMPLHLAKEYGGWKNRQLVDFYERFAETVLTRYHQKVNYWM TFNEINSAFHFPALSQGLVKSNGANDYQNIFQAWHNQFVASSKAVKIGHELNPELQIGCM IIYATTYGIDSNPVNQVATMIENQEFNYYCTDVQVRGEYPAYAERMYQKYAVKDLVIEEG DLELLKEYPVDYIGFSYYMSTAVDVTGTTNDTANGNLLGGVKNPFLEASEWGWQIDPEGL RIALNELYNRYQKPLFIVENGLGAIDKVDENFYVADDYRIDYLRRHIEAMAEAVADGVDL MGYTPWGCIDLVSASTGEMSKRYGFIYVDLDDEGNGTKNRYEKKSFNWYKQVIETNGQNL D >gi|307679028|gb|GL456769.1| GENE 102 107570 - 107965 535 131 aa, chain + ## HITS:1 COG:SA1052 KEGG:ns NR:ns ## COG: SA1052 COG0194 # Protein_GI_number: 15926792 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Staphylococcus aureus N315 # 9 121 8 124 207 78 38.0 4e-15 MIKQLQHPFFVIMGPSGSGKTAITSKVFPKNYKVISHTTRKKRLDEVDGVDYYFETKASF QTLIETNQLVEYDFYHGNYYGVGVDAIVETTKEHPAYNALTFPGFQAVFERFGESVIPVF LTFQKKIFINV >gi|307679028|gb|GL456769.1| GENE 103 108286 - 108963 809 225 aa, chain + ## HITS:1 COG:L53789 KEGG:ns NR:ns ## COG: L53789 COG1309 # Protein_GI_number: 15672643 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 123 1 121 189 74 36.0 2e-13 MPTNTFFHLPEEKQQRLLDAAQIEFSRHSLQEASIANIVKLAGIPRGSFYQYFENKEDLY FYYFATLRKNSERDLEKQIIAEDGDLIEAMDVYFSKMIVEVLTGENASFYRNLFVNMDYR ASRRVTDNLATGEEEKNRKQHCHKHRGRKGHAAYAEHLYQIIDRSKLTIETPKEFTWFMQ TAMHAVFSTIVDGYRQQRENPAYDSTEAVKQLKMKLNWLKNGAYK >gi|307679028|gb|GL456769.1| GENE 104 108984 - 110711 185 575 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 332 559 2 231 245 75 25 2e-12 MIKLVKRMSLWSVFAAVLFMIVQIIADLYLPTLTSNIINDGVAKGDINYIWSTGVVMLGF SLISIVASIGNTFFATKESQSLGKKLRTDIYRKVENFSNNEFDKFGTASLITRTTNDVNQ IQMVMQMFLRLMINAPLTLIGASFMAYNKDPQLTKIFLYVLPIMAVLVGGIMFLAVPLFK SMQKKTDRLNLVFREGLTGVRVIRAFGKANYEEQRFDEANKDYTQTAIKVNTIVALMIPL MTLIMSGTNIAITWFGGHYIAEMQLEVGNLIAFMTYAMQILMSFMMLSMIFVMVPRAQAS ADRINEVLNTDSEIKDVPNPELLSLKGDKATLAFEHVNYRYQHAENLALEDIDFSAKSGE TVAIIGGTGSGKTTLVNLLPRFYDVESGKILLNGKNIKDTSQHNLREMIGFVPQKAVLFT GTIRENMQYGAPNATDEEIWQALEIAQAKAFVSELAEGLDSHVEQGGGNFSGGQRQRLAI ARALVKPADVYVFDDSFSALDFKTDANLRKALKEQMTDAIVVLVAQRVSTVMEASTILVL DEGKLVGKGTHEELLANNQTYQEIVHSQLREEDLA >gi|307679028|gb|GL456769.1| GENE 105 110708 - 112576 171 622 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 397 605 28 233 312 70 26 8e-11 MSSRPKGGPMGGGPGRNIGAKGPKPKNFWKTVKRLFRYMSKRMLSIIAVLVLAIAAVVFQ IQTPKVLGQATTEIFKGVMKGAAEMKQGLKITSFPIDFDKIGQILLIVIAMYLISAVFNF LQQVIMTRVSQRTVYELRQELEAKMNKVPISYYDTHSNGDIMSRAINDMDNIASTLQQNL TQLITSIVTFVGVLWMMLTISWQLTLIALATVPLSLIVVMVVAPRSQKHFAAQQKSLGLL NNQVEETYGGHVVVKSFNHEESDQEVFEKENEKLYHAGRKAQFISAIIMPLMNFIKNLGY VFVAVLGGVKVANGMMDLGDVQAFLQYTNQFSQPITQIANLMNTIQATVASAERVFEVLD EEEMVDEPSGVPVETDSPYRVSFEHVAFGYSPEKLLMKDFNLNVKPGEMVAIVGPTGAGK TTLINLLERFYDISSGSIKYDGVDTRDLSREELRAHFSMVLQDTWLFTGSIYDNIHYGND QASEEEVIRAAKAAHVDDFVRKLPEGYQTILNEEASNISQGQRQLITIARAFLANPDVLI LDEATSSVDTRTEILIQAAMNRLLENRTSFVVAHRLSTIRDADTIIVMAEGSIVETGTHD ELMAKNGFYADLYNSQFSEEVA >gi|307679028|gb|GL456769.1| GENE 106 112763 - 113608 974 281 aa, chain + ## HITS:1 COG:lin0649 KEGG:ns NR:ns ## COG: lin0649 COG2514 # Protein_GI_number: 16799724 # Func_class: R General function prediction only # Function: Predicted ring-cleavage extradiol dioxygenase # Organism: Listeria innocua # 1 249 2 255 279 71 22.0 2e-12 MEVTEKMTEFQLEKAATLKTIAIRAKKVGEMVDFYKKVMGFVLKSEENNLSIWGTREAGT QLLILEETRKAEDFHNEEKQMAYFSIKVPTEKEFLQIAQRVLEQDYPIDESFQIGTRQSM FITDLEGNQFEIFHDEATANSTSEKQPIVLKDLISEDLEPHQGLAAGSYLAHVQLKTNNQ KEIKAYYEEVLGLKRNEKDQFVLEDGKATIGFQKPETSEVDQLPDPHLGLDFFTIKLSDQ DHILAIEQQLTAKNQEFFIDQKKAIVTVFDPIGLEWWFVLK >gi|307679028|gb|GL456769.1| GENE 107 113738 - 114781 974 347 aa, chain + ## HITS:1 COG:L114054 KEGG:ns NR:ns ## COG: L114054 COG1680 # Protein_GI_number: 15674027 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Lactococcus lactis # 9 330 11 308 328 220 40.0 3e-57 MYEKTKWKIQKMMKKGVFSGASFCFIEGEKEESNCWGLAQVKPTKEQLTSAMLFDVASLT KVVGTTTVILQLVEEGKIILDQSLQTYYPSFQDSNITIRHLLTHTADLQGYIPNRDQLNA QELKDAYNHSFHAGKAIGKKVVYTDAGTILLGFMLEEMFQQSMIEILSERVLLPLGMNES TFLPKNPLNCVPTELHEQRGLIRGATHDPKALVLREHAGNAGLFSNVYDLTKFVRMYLNR GSYHNHQFLKKETIDLLLVNQVPAADKPRSLGWDFKYDVATQRPLLFHTGYTGTFLLIDV QQQSAFIFLSNRVHPEDHRNTYIEERDQLLATYLKEKSSVSDEMTSF >gi|307679028|gb|GL456769.1| GENE 108 114823 - 115794 1222 323 aa, chain + ## HITS:1 COG:L179409 KEGG:ns NR:ns ## COG: L179409 COG1482 # Protein_GI_number: 15672751 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannose isomerase # Organism: Lactococcus lactis # 1 321 1 315 315 408 63.0 1e-114 MQEPLFLQPVFQEKIWGGNRLHTLFGFDLPSDKIGEDWAISAHPHGVSTVLNGEFKGKKL DELWADHQELFGHAGGAVFPLLTKILDAEDDLSVQVHPDDAYGQKHEGELGKTECWYIID AEPGAEIIYGHHAKTKEELAEMIEEGRWDDLLRKVPVKKGDFYYVPSGTIHAIGSGILIL ETQQSSDTTYRVYDYDRTDDQGKTRELHIQQSIDVTTVPAKDPDLSIQQENQGQSSIVTY VKTDFFNVYEWRVSGILKVKKQAPYTLATVIEGVGRLITEDAAKADVATFDLKKGDSFIF PTDIPSWRFEGDLTIIASEPGSR >gi|307679028|gb|GL456769.1| GENE 109 115850 - 116395 381 181 aa, chain - ## HITS:1 COG:no KEGG:EF2588 NR:ns ## KEGG: EF2588 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 181 1 181 181 247 98.0 2e-64 MKKITPRIITIIAFSVALNYLGSTIALLLRLPIYLDSVGTIFTGALLGPLFGALTGILTS LLTGLTTDIFSLYYSPVQLCTGILAGLLLHQQLKVTKLPFKTLWLTIPGTVISSLITVCL FGGITSAGSSIIVQFLYGLGLNQLASVLLVQLITDYGDRLLSVIIVTAVIAALPKRSFIT K >gi|307679028|gb|GL456769.1| GENE 110 116398 - 117372 815 324 aa, chain - ## HITS:1 COG:PA0143 KEGG:ns NR:ns ## COG: PA0143 COG1957 # Protein_GI_number: 15595341 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Pseudomonas aeruginosa # 2 299 19 318 329 194 39.0 2e-49 MQKVIIDCDPGIDDTLALLYALASPELDVQAITVVCGNVPVEIGVENVFKCLEKVNRLDI PVYQGAASPLKRPFVSAQDTHGMDGLGETYFPRTSKIQAQALSAADYLAQTFQQATDCSI IALGPLTNIALALKKEPLLGRNLQRFVSMGGTFKSHGNCSPVAEFNYWCDPDAAAWVFEK LGAKIEMVGLDVTREIVFTPTILNYCQRLNPKMGNYLAEITQFYFDFHWKYERILGCVIN DPLAVAYFIDPTLCQGFSSYGQIVPDGIAMGQSMIDQYHFQQQPANCHVLTTVDSQQFFV KFLSILLNVQIDEIERDFKNLRMG >gi|307679028|gb|GL456769.1| GENE 111 117609 - 118298 981 229 aa, chain - ## HITS:1 COG:SP1590 KEGG:ns NR:ns ## COG: SP1590 COG3442 # Protein_GI_number: 15901432 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferase # Organism: Streptococcus pneumoniae TIGR4 # 4 224 16 236 260 285 63.0 4e-77 MSKELVVCHLYGNLLNTYGDNGNLLMLKYLTEKMGVTFRSEIISIYEPFDPEKYDLVFVG GGQDFEQLIISEDIQNKKEALTSYIENDGVLLAICGGYQLLGHYYVGAQGEKIKGIGALD HYTLSQDNNRFIGDIEIYNEEFDETYYGFENHNGMTFLGEGERPLGTVKQGKGNNGQDNG EGVVYKNVFGSYFHGPILARNKNLGIRLIRTALEKKYGEPIAIPETLYK >gi|307679028|gb|GL456769.1| GENE 112 118291 - 119643 1744 450 aa, chain - ## HITS:1 COG:L114717 KEGG:ns NR:ns ## COG: L114717 COG0769 # Protein_GI_number: 15673088 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Lactococcus lactis # 1 445 1 445 449 572 62.0 1e-163 MGIRSHLAIAAGKTSQWVLQTFFKGGSSYPGKLALKIDPKILDTLAKDYEIVVVTGTNGK TLTTALTVNILRQEFDEVLTNPTGANMEQGIVSTFLNAKAKKGQKKFAVLEIDEASLSRV TKYIQPKLFVFTNIFRDQMDRYGEIYTTYRLIMEGAAAAPEATILCNGDSPIFNSKETVN PRKYYGFNHLPPKEQLAHYNTDGVLCPKCNHILHYKMITYANLGDYYCPNCGFKRPELDV QLTEMVRMDNTSADFVIDGEEYGIAVGGMYNVYNALAATAVAEYYQVAPDKIRAGLAYDE KVFGRQETIKVGDKECTLVLVKNPVGLNQVIDMMGLAPYSFSLVSLLNANYADGIDVSWI WDGNHEAFADMDIPKVIAGGDRHEDMALRLKVAGIPEEKLLEIADLEQVISEIKTLPTDH VYILATYTAVLQLRKSLTAQGYIQGGMNGV >gi|307679028|gb|GL456769.1| GENE 113 119849 - 120487 628 212 aa, chain - ## HITS:1 COG:VC0355 KEGG:ns NR:ns ## COG: VC0355 COG2964 # Protein_GI_number: 15640382 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Vibrio cholerae # 13 209 37 230 240 79 29.0 4e-15 MLSDEKLTFLTQIAKGLAGQFGENCEVVIHQINEDNINNSIVSIENGHVSSRHLGDGPSQ VVLEALKKDPSELNDHINYLTRTHDGRILKSSTMYFKDENGQLDGIFAINYDITTLIAAE SNLKSLISTAEPEEDKDPDYIPQDVNELLDDLIHESVKLVGKPVPLMTKDDKIKCIQFLN NKGAFLVTKSGDKVSNFFNISKYTLYSYIDAK >gi|307679028|gb|GL456769.1| GENE 114 120891 - 122225 1696 444 aa, chain + ## HITS:1 COG:ssnA KEGG:ns NR:ns ## COG: ssnA COG0402 # Protein_GI_number: 16130781 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Escherichia coli K12 # 24 443 45 461 464 245 34.0 1e-64 MLLIGNGRLITRDAQNHFFENGCVAIDGQVVKQVGTTEELKQAYPEATFIDAKGGVIMPG FINMHNHIYSTFARGLSLTNYHPKNFMDILVDQWWRIDRALTLEDTYQSGKVAYLDSIRN GVTTVFDHHASYGEITGSLTQLSNAADELGIRTCLCYEVSDRDGEQKMREAVQENAAFIK ASSLRNDDMQKAMMGMHAAFTLSDASLELCAANTPDGIGYHIHIAEDLADVHDSLKKYGK PIVNRLFDLGILGKQTMAGHCIHIGPHEMELLRDTGTMVVTNPESNMGNAVGCPPAMRMF NEYGILMGLGTDGYTNDVTESYKVGNVIHKHHLADPNAAWSEIPTMLFDNNPQMANRYFK TKLGVLEPNAAADVIIVDYHGPTPMTKENYNMHILFGMNGGMVTDTVINGEIRMRNREVQ GIDEEKVWHDAQTQAQSFWKRVNQ >gi|307679028|gb|GL456769.1| GENE 115 122256 - 125261 3071 1001 aa, chain + ## HITS:1 COG:ygfK_2 KEGG:ns NR:ns ## COG: ygfK_2 COG0493 # Protein_GI_number: 16130780 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Escherichia coli K12 # 439 954 1 530 582 395 42.0 1e-109 MSDIMHPISIEALLNWIFSEYQQDGTIFGIRKFYHADPTKTISLFGEKMETPCGPAAGPH TQLAQNIIAAYLTGSRFFEVKTVQILDGEDLPVSKPCIAAADECYNVEWSTELRVPQAYD EYVKAWFVLKLLSKEFELGDPNGFIFNMSVGYDLAGIQSPKIDRYINEMQNAEGTPIWAE CQAAAKKYLSYFKKVDDLYIEAISPKVCHSITLSTLHGCPSDEIERIAAYLLSEKGLHSF IKCNPTMLGYEYARQTMDELGFDYMVFDDHHFKEDLQFEEAVPMLQRLQLLANSKNLSFG VKITNTFPVTIAANELPGDEMYMSGRSLFPLSISLAQKLSEAFDGKLQISYSGGADIFNS KEIFDAGIWPITMATTLLKPGGYQRMNQVANVLSAAEYPQMVHVNLDKLAQVVEKAKTQA RYQKSIKLPESTKLRKTVPLTDCYIAPCRSDGGCPINQDIPAYLRYVSEGNYLKALQVIV DKNPLPFITGTICAHPCMTKCTRQFYEESIHIREVKLEAAEHAYDELLTTLEKPQPKENA PKTAVVGGGPAGISAGYLLAREGMPVTVFEKSETIGGVCSQIVPEFRISMESVQKDVQLA EFMGAEFRTGQEAPSLAELKNQGYTNVIYAIGAWKHGVLRLESGRALNSLEFLKANRENP TINPYGEQIVVVGGGNTAMDCARAATTLPGVKKVSVVYRRNKRNMPADEEELYLALEDGV DFLELLSPIKHENQQLTCEKMVLGERDASGRRRPIGTGEMIDIPADTVIAAVGEKVDTEF YQALGIHTDNYGKVVSNQETLETNIPGVYVIGDANLGPATIVEAIADATKAANNICLVHN HHYEKDNLNSDVAFVRNKRGILVTDEMSCSQASRCLECSTICESCMDVCPNRANIVVYVE GKPQIVHVDRMCNECGNCETFCPYASAPYKDKFTLFNSESDFYDSTNSGFYVQNPVDKIC LLRLWGTVSTIQLTDQGLDVPEDLIALMVTMIEEYAYCMQA >gi|307679028|gb|GL456769.1| GENE 116 125291 - 126664 1076 457 aa, chain + ## HITS:1 COG:SMc01821 KEGG:ns NR:ns ## COG: SMc01821 COG0044 # Protein_GI_number: 15966207 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Sinorhizobium meliloti # 1 454 1 452 484 347 41.0 3e-95 MSILLKGGTVVSAYNRRQLDIRIDGEQIVEMGANLPVENSQIEDVTGCYVLPGFIDAHTH LELNNGKGSLSTADNFTTGSQAAVAKGTTTVIDMATPNKGGSLKDCLATWNQLAEGKSSC DYTYHMSMIEWKPTIAAEIQEMIAAGITSFKMYMAYDNLWTTDAEIFEAMKEIKKVNGML GVHCENGDLVDELIQSYVSQGKLTPHYHPLSRPAAVEAEAVARYLMIAEMADLSVNIVHL STKRSLEAVERARQRGQSVYVETCPQYLLLDDHLYDAPNFEAAKYVCSPPLRKREDQQAL WQGIKEGAINTISTDHCSFNFHGQKTVGKDDFSKIPNGMPGVETRPELIYTEGVAKGRIT LEKMVALLSENIAKQFSMYPQKGVVQEGSDADLVVWDPRTTGVIAARTQLQNVDYTPYEG FETQGQARMVYLRGQKVAEAGQVILANQGKFVFRKAT >gi|307679028|gb|GL456769.1| GENE 117 126688 - 127881 1177 397 aa, chain + ## HITS:1 COG:STM1002 KEGG:ns NR:ns ## COG: STM1002 COG1171 # Protein_GI_number: 16764362 # Func_class: E Amino acid transport and metabolism # Function: Threonine dehydratase # Organism: Salmonella typhimurium LT2 # 19 396 22 399 404 413 52.0 1e-115 MEKIKWTANEMPKTEDKYLPLMSKEKIEKALAFHKSFPQYSETPLAELNHMAAYLGLNDF FVKDESYRFGLNAFKVLGGSFAMANYIAEKLKKDVSELTYDELTSDQLRSAFGQATFFTA TDGNHGRGVAWAANKLGQKSVVLMPKGSTQTRKENIEKEGATVTIEEVNYDECVRMANKM AEETENGVMVQDTAWDGYEKIPTWIMQGYGTMALEASQQLRKFGSERPSHVFVQAGVGSL AGAVIGYFANAFPENPPIMVVVEAQAADCLYQSAIKKDGEIRFVDGDLQTIMAGLACGEP NTISFYILKNHTSFFVSAPDWVSEKGMRMLGAPLKGDPQVVSGESGAVAMGLVATVMQDP DYQELREALQLDETSNVLMFSTEGDTDPDNYKKILWR >gi|307679028|gb|GL456769.1| GENE 118 127887 - 129197 1599 436 aa, chain + ## HITS:1 COG:ECs3745 KEGG:ns NR:ns ## COG: ECs3745 COG0624 # Protein_GI_number: 15832999 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Escherichia coli O157:H7 # 3 431 7 396 403 525 59.0 1e-149 MDFNAVNAAAEGYREDMVKFLRDLVKIPGESAEEGNKIARAKAEMEKLGFDKIDIDPQGN LLGYMGSGEKLIAFDGHMDTVGIGEMSNWKFDPYDGYETETEIGGRGTSDQEGGIVSAIY GAKIMKDLGLLSEKYTALVTVTVQEEDCDGLCWQYIIKEDGIRPEFVVSTEPTDGGIYRG QRGRMEIKVDVKGVSCHGSAPERGDNAIYKMADILQDVRALNNNGDTESTAIRGLVRMLD PKYNPEWQEARFLGRGTVTVSQIFHSSPSRCAVADGCTVSLDRRMTAGETWESCLEEIRN LPAVKKYGDDVTVSMYNYDRPSYTDLTYEIECYFPTWVIPENHDVTKALMETHKNLYGET RKGSVETLEMREERPLLDKWTFSTNGVSIMGRNGIPCIGFGPGAEAQAHAPNEKTWKDDL VRCAAVYAALPTVYCG >gi|307679028|gb|GL456769.1| GENE 119 129236 - 130429 1576 397 aa, chain + ## HITS:1 COG:ECs3743 KEGG:ns NR:ns ## COG: ECs3743 COG0078 # Protein_GI_number: 15832997 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Escherichia coli O157:H7 # 1 394 2 394 396 543 66.0 1e-154 METFKEYIEKLDKLEFEKMYENDFFLTWEKTRDELEAVFTVADTLRYLRENNISTKIFDS GLGISLFRDNSTRTRFSFASACNLLGLEVQDLDEGKSQISHGETVRETANMISFMADIIG IRDDMYIGKGNAYMHEVSESVQEGYKDGVLEQRPTLVNLQCDIDHPTQAMADALHLIHEF GGIENLKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVVLAHPEGYEIMPEVEEVA KKNAAEFGGNFTKTNSMAEAFKDADVVYPKSWAPFAAMEKRTELYGNGDQAGIDQLEQEL LSQNKKHKDWECTEELMKTTKDGKALYMHCLPADITGVSCEEGEVEASVFDRYRVELYKE ASYKPYVIAAMIFLSKVKNPQKTLTDLADKATPREVK >gi|307679028|gb|GL456769.1| GENE 120 130670 - 131614 1146 314 aa, chain + ## HITS:1 COG:yqeA KEGG:ns NR:ns ## COG: yqeA COG0549 # Protein_GI_number: 16130776 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Escherichia coli K12 # 1 309 1 308 310 357 63.0 2e-98 MGKRVVVALGGNALGNNLTEQMTAVKQTSKAIADLIEAGYEVILSHGNGPQVGMIQLAME EFSFNNPQYPVVPLSVCVAMSQSYIGYDLENALQEELRQRNISKAVTTIVTQVVVDENDP AFKKPTKPIGRFMTKEEAEQLVKEKNIQVMEDAGRGYRQVVASPKPKNIVELLTIQTLVD AGQTVIAGGGGGIPVIQEGNRLKGVNAVIDKDFCSERLAEQVDADLLVILTAVEKVCINF GKENQEALGNVSTEKMKQYAQEGQFAPGSMLPKVEAAIKFAESKPGRKTLITLLEKAKEG LSGKTGTLIENKES >gi|307679028|gb|GL456769.1| GENE 121 131629 - 132009 446 126 aa, chain + ## HITS:1 COG:slr0709 KEGG:ns NR:ns ## COG: slr0709 COG0251 # Protein_GI_number: 16331956 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Synechocystis # 1 124 1 127 130 134 55.0 5e-32 MTNKMINSAQAPAAVGPYSHSVLAGNTLYISGQLGLDPQSGEMKATVEEQAKQAFINLGS ILKEVEMTYDNVVKTTVFLQHMSDFSKINEIYGNYFSEVLPARSCVEVAKLPKDGLFEIE AVAVKG >gi|307679028|gb|GL456769.1| GENE 122 132103 - 133422 404 439 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 11 439 6 427 447 160 28 8e-38 MNEKKEQALFEYDAKLSISEAIPMGLQHVVAAVVGIVTPGIMIAKVCQLSPSDTTILIQT SLIFSAVATLIQLFPIFGKVGSRLPVMMGASFAYVPILMAIGADFGIAAIFGSQLVGSIL VIIVGLFIKKIRVLFPPLVTGTVILSIGLSLFPVAIKYMAGGAGSADFGSARNWLVALLT FAIVFYFNYFAKGFLKLSAILNGMVIGYLISLALGMVSFEPVQNAKIVQVITPFHFGLDF QLVPIFTLVVMFIVDAVQAIGQFTATTVGAMDRDATDEELSGGIMGSGFTNFIGSLFGSI PVATFGQNVGLVTVTKVINKYVLVFASVILLIAGFVPKVAALLTTIPYAVIGGATISVFA SISMTGIRMIASQEMTPRNTGVVGTALAFGIGVTLSTGSLAGFPTWVTTIFGNSEVILTT LVAVLLNVILKPKKRVALE >gi|307679028|gb|GL456769.1| GENE 123 133516 - 133875 382 119 aa, chain + ## HITS:1 COG:AGc4647 KEGG:ns NR:ns ## COG: AGc4647 COG2005 # Protein_GI_number: 15889822 # Func_class: R General function prediction only # Function: N-terminal domain of molybdenum-binding protein # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 17 107 22 109 131 61 37.0 3e-10 MFTYSLNLKLKTDRNFFGPGVVEVLQKIQQTGSLNLAAKEMKMSYNKAWRIVRVAEEELS FPLIIKSVGGCNGGGSIVTDQGKELIDQYLLFEKKVYQQVEACFEEIFKEQDVVSEELK >gi|307679028|gb|GL456769.1| GENE 124 133926 - 134879 834 317 aa, chain + ## HITS:1 COG:CC2617 KEGG:ns NR:ns ## COG: CC2617 COG1975 # Protein_GI_number: 16126854 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family # Organism: Caulobacter vibrioides # 2 315 21 323 338 102 28.0 1e-21 MLLTIGTSSGSTPRSQGARMLVSAEGRIAGTVGGGAVEFQAEQVAKKLLLEKENAQRQFI LAPNNIADLGMVCGGDVTIFFHYLSWETPFLKELCESIETHFQNNQQGWLMTELDQNNLG KVSFYSETGELIGSTSWEGELSLLPKGIHCVQKEETTFLTEAILQVGKVYIFGSGHVARA LVPILNYLSFYCVVVDDRPEFLTAQAFPQAEELRVIPLENLAAFIEITADDYGIVITRGH NFDFIVAKQLLETPAKYIGVMGSKHKIASQVRRLKEVGYTMTEIERIFMPIGLDIAAETP EELAISIAGELIQQRYQ >gi|307679028|gb|GL456769.1| GENE 125 135000 - 137573 2537 857 aa, chain + ## HITS:1 COG:BH0748 KEGG:ns NR:ns ## COG: BH0748 COG1529 # Protein_GI_number: 15613311 # Func_class: C Energy production and conversion # Function: Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs # Organism: Bacillus halodurans # 169 848 15 741 760 345 33.0 3e-94 MYSIIVNGQSETCETNKKLMDFLREDLGLTGTKDGCNQGSCGACTVLVNGKASKACLFTL EKLAGKEVTTIEGLSQRQKDVYAYAFAKTGAVQCGYCIPGMVISAQGLLNKKPEPTKEDI QKAIRGNICRCTGYVKIIEAIQLAAKMFCEEASIPEEHSNGKLGEDFQRVDAVEKTLGTG IYVDDIDIEGMLHASALRSAYPRAKVLSIDSTQALAHPDCVAVFTAKDVPGNNKIGHLEF ISDWDVMIPEGEITRYVGDAVALVVSKRKETLPEIKNLVEVDYEEMIPLTSCEAALAEGA PAIHEKGNILSHEHLVRGNAEEVLENSAFVVTEHYSVPINEHAFMEPECAIAQPEGEGIL LFSAGQSIYDEQREVARMLGLDKEKIHVQSKLVGGGFGGKEDMSVQHHASLAAWLLKKPV KVLLSREESLMVHPKRHGMEMDFTTGCDEEGNLTAMKAVIYADTGAYASLGGPVLQRACT HAAGPYKYQTIDVEGFAVYTNNPPAGAFRGFGVCQTAFAIESNLNLLAEKVGLSPWEIRF KNAVAPGDTLPNGQLVSKNAALKEALLAVKDVYEQAEVAGISSFFKNSGVGVGLPDTGRC IISVEEGKIHVRTSAACIGQGMATVTTQIACETLNLPPEMIVAEAPDTRRTPNSGTTTAS RQSLFTGEATRRAAMQLRYELDMGRALSDLEGEEFYGEYSAKTDPLINDKKSPVSHAGYG YAAEVAILDDKGKVAKFVAAYDMGQVVNPRAAEGQIEGGIAMGMGYALTEKFALEEGYVK AKYATLGLVNATQVPPIETILVHADNLHEGLAYGIKGVGELATIPTAPALAGAYFALDGQ LRPSLPLENTPYQKKKR >gi|307679028|gb|GL456769.1| GENE 126 137587 - 138168 696 193 aa, chain + ## HITS:1 COG:APE2223 KEGG:ns NR:ns ## COG: APE2223 COG2068 # Protein_GI_number: 14601923 # Func_class: R General function prediction only # Function: Uncharacterized MobA-related protein # Organism: Aeropyrum pernix # 8 186 1 189 205 85 32.0 7e-17 MSLVSVIILASGNSQRMGQNKLFLKYQGKTFLEHTLTLVNQLDVLERILVVSPENQPAFP LPKNIQLILNHQWQEGQSSSIRLGTEQARGAGYLYLPSDQPLLTPKMLQPVLDKCQRNKI VVPLQKDGCPSSPVLFGNQFRQELLTLTGEKGGRMIYERFPEAVQMLRIATPGRLKDIDT PEEYRKLIQETNS >gi|307679028|gb|GL456769.1| GENE 127 138182 - 139330 1250 382 aa, chain + ## HITS:1 COG:CAC2354 KEGG:ns NR:ns ## COG: CAC2354 COG0520 # Protein_GI_number: 15895621 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Clostridium acetobutylicum # 4 380 1 374 379 234 37.0 2e-61 MKDLVYLNYAATSYKKFPATIEALTAYLAENQFMNYGRNAPLLREGLPLLETRQLLADFF QAPSAAQITFTNNATTSLNLALAGILQPGDHVITTMLEHHAVARPLHLLEKERGISVTYV ACQKTGLLEVEDIQRAWRTNTKALVMTHASNVLGTILPIEECFQWAQQKGLLTILDAAQT AGFLPIKMTQMAIDVLAFTGHKSLYGLAGIGGLAFSERGAEAVKPLMAGGTGSHSNSFDQ LSFLPDKFEAGTLNSLGILSLNSSIKELNKIGLAAIQKHERTLMQNFLNGLSGLPVTILG TKDVAQTVPVVSITLWNQEETIVAQQLAEQYGIMTRAGLHCAPLAHQTAGTLATGTLRFS FGWQTTPEEITWTIHALQELLI >gi|307679028|gb|GL456769.1| GENE 128 139346 - 140368 976 340 aa, chain + ## HITS:1 COG:Cj1504c KEGG:ns NR:ns ## COG: Cj1504c COG0709 # Protein_GI_number: 15792818 # Func_class: E Amino acid transport and metabolism # Function: Selenophosphate synthase # Organism: Campylobacter jejuni # 28 339 1 307 308 216 41.0 7e-56 MDFLSQCTSGGCGAKIESRVLNQLLQHLPETPANERLLVGFEHADDAAVYQITPEKALIS TVDFFSPMVNDPLSFGKIAVANALSDVYAMGGTVLYALNLVCFPQKMSKEWLEQMLLGGS LKLKEAGALLAGGHSIYDHEPKYGLAVTGEVHPENLWHNNTPQVGDVLILTKALGVGIIQ AAVRGQLAKQTEQKIAQDSMERLNKYAAANARSYAVHACTDVTGFGLLIHAKEMADNQVT LLIDTEALPTITGALAYAGECLVTAAGQRNRQTIGTTIDYSKISMEMQELLFDPQTSGGL LISVAADEAAACLAAIQKEDPVAKIIGEVLPKEQQAVVLL >gi|307679028|gb|GL456769.1| GENE 129 140384 - 140971 719 195 aa, chain + ## HITS:1 COG:no KEGG:EF2566 NR:ns ## KEGG: EF2566 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 195 1 195 195 323 100.0 3e-87 MKLVDALGKPCPIPVIETKKALAELGLAGGTIEVLVDNEVAIENLKKLATKKQATLTAKQ IEATVFSVKITVPEEATQQTSQSATDLVITIGSDQLGTGDEQLGRLLMKSYLQSLSEAET VPTQLLFFNRGAFLTNQAANTLADLQQLAEKGTTIQTCGACLDFYHLTDTLAIGSITNMY EIVETMNQAAKVITL >gi|307679028|gb|GL456769.1| GENE 130 140992 - 141249 145 85 aa, chain + ## HITS:1 COG:no KEGG:EF2565 NR:ns ## KEGG: EF2565 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 85 1 85 85 171 98.0 1e-41 MEYLLTFPNTHYAVLAEQVLLARKVAVRVFTLPPSLTDGCGIGLLINEAEITHSVCFLEE AKVRVASIFSVKNDLGERRYQLWSP >gi|307679028|gb|GL456769.1| GENE 131 141237 - 141992 458 251 aa, chain + ## HITS:1 COG:no KEGG:EF2564 NR:ns ## KEGG: EF2564 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 251 1 251 251 483 99.0 1e-135 MESLKKCFDLQGKEIVSIVGSGGKTSLMWALAKTYRKEAVLVSTTTKIGFPQRQLYDYFY TNHFEKITPNICGITLAGTAINNQTKLTMPAMTSFQTLFQHFTKVFLEADGSKQRPLKGW SSYEPVILKETTTTIGVLPISVIGQKIDVTTIHRLPLFLELTDAQLQEPITETLLAQLIA HPKGLFKESQGQRILCLNQTHTRREFVQAMNVCLQLPKSCFEKLDKIIACNMELEKGLIL WEKSVKTSKKN >gi|307679028|gb|GL456769.1| GENE 132 141956 - 142786 868 276 aa, chain + ## HITS:1 COG:yqeB KEGG:ns NR:ns ## COG: yqeB COG1975 # Protein_GI_number: 16130777 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family # Organism: Escherichia coli K12 # 11 269 269 526 541 234 47.0 1e-61 MGEISQNIQEKLVIVRGGGDLATGVIQKLWHVGFKILVLETECPLAIRRTVSVCDAIFQK EQRVEDLVAVRITSLKDCAKCWQQNKLPVFVDQTASAIQQLKPLIVIDAILAKKNLGTHR GMAPITIALGPGFSAPQDVDVVIETMRGHRLGRLYFEGTALPNTGIPGEIGGKSAERVVH APASGQVTHLKNIGDLVLKGEALFLIDQVPVYSPLTGTLRGLISEKVTCYQGLKCADVDP RPVEKVDCLTISDKARALGGAVLEAIFMIGRRKNVL >gi|307679028|gb|GL456769.1| GENE 133 143028 - 143486 646 152 aa, chain + ## HITS:1 COG:SPy0721 KEGG:ns NR:ns ## COG: SPy0721 COG0716 # Protein_GI_number: 15674777 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Streptococcus pyogenes M1 GAS # 1 149 1 148 149 126 50.0 1e-29 MALVKIVYASMTGNTEEISEILEEQFQEAGVEVEREECSEVDVDFFDDADACIIATYTYG DGELPFEFEDFFDELTEKDLAGKPFGVVGSGDREYGEFFCKSAHDFVGAFEKAGAKKVAE TVEIENNAEEEDIEMLKTFVKSVATTLSDSVA >gi|307679028|gb|GL456769.1| GENE 134 143542 - 144381 1111 279 aa, chain + ## HITS:1 COG:TM1639 KEGG:ns NR:ns ## COG: TM1639 COG0543 # Protein_GI_number: 15644387 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases # Organism: Thermotoga maritima # 4 276 9 280 282 326 53.0 3e-89 MFNILQSTQLSSNTFDFWLEAPRIATHAQAGQFVILRIDEKGERIPLTIAETNPQAGSIR IIFQVIGKTTAALSQLKTSDSLLDITGPLGMPTEVKQYGTVMVVGGGVGIAAIYPIIKAL KEAGNRVITILGARTAELVLLQEECRRYSDELIITTDDGSLGKKGLVTEAMEEVIARESV ACSWAIGPSIMMKFCTLTAEKHQLPIYVSLNPIMIDGTGMCGGCRVTVDGTMKFACVDGP EFKGNEVNWDEFINRMKQYQEEEAVCFTDRLKEQVEKNG >gi|307679028|gb|GL456769.1| GENE 135 144374 - 145792 1530 472 aa, chain + ## HITS:1 COG:TM1640 KEGG:ns NR:ns ## COG: TM1640 COG0493 # Protein_GI_number: 15644388 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Thermotoga maritima # 8 461 5 459 468 588 63.0 1e-167 MARKSRIKTPIAEQAPTIRKNNFEEVCLGYTLAEGQEEAIRCLQCKNAPCIAKCPVMIDI PGFILAIREGNMEQAADILSKYTNLPAICGRVCPQEKQCEQVCKLGKAKNFEPVAIGKLE RLVADWALENHKFPKKTAEPTKGKIAVVGSGPSGLTVAGDLAKLGYEVIIFEALHEAGGV LTYGIPEFRLPKKIVKQEIASIEALGVTIETNVVVGKTITMEEIMSEFDACYLSVGAGAP NFMGIPGTSLNGVYSSSEFLTRINLMHSYEFPEYDTPIKRAKNVVVIGGGNVAMDAARSA KRLGAENVNIVYRRSLEELPARIEEYHHSLEEGINYYWLTNPIAYLDDQQGNLAGVECVK MVLGEPDVSGRRRPEPVPDSTFTIPADAVIEAIGQGANRVLLSTYPEIELNQWGYIQADP KTGATSIPGVFAGGDIVTGAATVILAMGAGKIAANAIDQYVKTQKTTVTSNV >gi|307679028|gb|GL456769.1| GENE 136 145813 - 149346 4062 1177 aa, chain + ## HITS:1 COG:lin0824_1 KEGG:ns NR:ns ## COG: lin0824_1 COG0674 # Protein_GI_number: 16799898 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit # Organism: Listeria innocua # 2 411 4 411 414 600 70.0 1e-171 MKKTMDGNTAAAYISYAFTEVAAIYPITPSSTMAELVDEWAESGLKNIYGQKVQVIEMQS EAGAAGVVHGSLKTGALTTTYTASQGLLLMIPNMYKIAGELLPSVFHVAARAVTTSALSI FGDHGDVMATRQTGFCMLAESSVQEVMDLSAVAHLASLEGSLPFVNFFDGFRTSHELQKI EVIDYDDLKEMVNQEAVTRFRMGGMNPNHPTVSGTAQNPDIHFQQRETVNKNYEEMPKIV QKYMKKINNLRGTTYDLTDYYGVEDATEVIISMGSASPVIKQTVDYLNQQGRKVGFINIH LYRPFPTENLLEKLPATVEKVAVLDRTKESGAEGEPLLLDVQSALYQHENRPIVIGGRYG LGSKDVAPNQIKAIYDHLLLPFKELKQRFTVGIVDDVTYQSLPEEPTLDLTPDTTFQAKF WGFGSDGTVGANKQAIKIIGDHTDLYAQAYFSYDSKKSGGLTVSHLRFGKEPITSTYLIE QADFIACHNASYLHKYDLLKGLKDGGTFLLNTIWDQEKVHRLLPAKLKKYIGEHQIKFYI INAVELARKVGLGRRINTVMSTAFFEVTNILTKEQYLPLLKEEVKKTYGKKSMEIVEKNY QAIDATFESLQEIVVPEDWATIVLEPENQESEAPAFVTNILEPINRQEGDQLTVSDLIEN GMKGGAIPMGTAAYEKRGIALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAP AGFAMREMRGTDGLMYRIQVSLEDCTGCGLCVQACPVKDKAILMKPYETQKEQAMNWAFA MTLKQKANPVKKLSVKGSQFNQPLMEFSGACEGCGETPYIKLLTQLFGDRMMIANATGCS SIWGGSSPVTPYTTNECGQGPAWSNSLFEDNAEYGYGMYIANRTKRQHLASLVEESLAKN VGSDSLQALLNDWLEHMAEGEGTQQRATKLAAALSEEADEDPLLTKIYEQKDLLVKTSQW IVGGDGWAYDIGFSGIDHVLASGEDVNIFVMDNEVYANTGGQTSKATPASAIAKFSAGGK HTSKKDLGMMAITYGNVYVAQVALGANSMQTIKAIDEAERYPGPSIIIGYTPCINHGVKG GMVRTLDQAKEAVESGYWPLYRYNPELVKKGKDPMVIDYKKTDFDKMRDFLEKQTRYSAL HTIKENQEVVEHLLDKTKEDAIERSESYNKLATHMKK >gi|307679028|gb|GL456769.1| GENE 137 149383 - 150798 1131 471 aa, chain - ## HITS:1 COG:lin0992 KEGG:ns NR:ns ## COG: lin0992 COG0168 # Protein_GI_number: 16800061 # Func_class: P Inorganic ion transport and metabolism # Function: Trk-type K+ transport systems, membrane components # Organism: Listeria innocua # 23 471 6 445 445 330 44.0 3e-90 MNHTRLLWLAQRKSDRFIRKNFSSIQIIVAYYILMTVISYLLFCLPIFREPDSHVPFIDL FFLAISTVSVTGLTTVDINSVFNDRGIVLLEVLFQVGGLGIMMISTVFFILSKRRITLKQ RQLIMTDMNQPRLSGIVRLIRTTFLILIWFQVIFGSLFSLYFYISGYYTNWRDAIFYGFY QAISAVTNSGFDISGDSIIPFAHDYLFLLAIMFLIFIGGIGFPVLLEIHEWLHFKKKNFR KKKRGLPFRFSLFSKIALLAFIVLFIGGTILIYLLEKDHLFLTMNESGRWVSSMFYSMTT RNAGLQINDLGDFQITTLIIFSVLMFIGCSPSSVGGGVRTTTVAIIGLYLLAFLKSEDDI SVFSRKIDDDDVKKSIVVFMLSLIMCFFAVVFLSATENLPLISIIVEVASAFGTTGLSLG ITDDLTTVGKLMIALLMFIGRIGMLYTLMIFVPKETRDLGYEYPSEKIIIG >gi|307679028|gb|GL456769.1| GENE 138 151168 - 152685 2231 505 aa, chain + ## HITS:1 COG:lin0374 KEGG:ns NR:ns ## COG: lin0374 COG1053 # Protein_GI_number: 16799451 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Listeria innocua # 5 504 9 506 506 612 67.0 1e-175 MKKVLMGVLSLGLLLGAATGCTSDQEKAAGKTKASSEKTEATSGASANGYTDPSELKDSY DVVIVGSGGAGMTAALQAKEAGMNPVILEKMPVAGGNTIKSSSGMNASQTKFQEKEGIKD SNDKFFEETLKGGKGTNDQELLRYFVDHSAEAIDWLDTKGITLSNLTITGGMSEKRTHRP ADGSAIGGYLVDGLVRNVREEKIPLFVDADVTDLVEENGQIDGVKVKMKDDKEKTVKAKA VVVTTGGFGANEKLITQYKPELKNYVTTNQEGTTGDGIQMIQKVGGALVDMKEIQIHPTV QQSDAFLIGEAVRGEGAILASQKGERFVNELDTRDKVSAAINALPEKSAYLVFDQGVRDR AKAIDFYDQKGFVEKGETIEELAEKIGMPADTLKATIDTWNQDVNAKDDKQFGRTTGMEA DLSTAPYYAIKIAPGIHHTMGGVKINTKTEVLREDGTPIKGLYAAGELTGGLHGQNRIGG NAIADIIIYGRQAGTQSAEFASAQK >gi|307679028|gb|GL456769.1| GENE 139 152911 - 153495 576 194 aa, chain + ## HITS:1 COG:L184871 KEGG:ns NR:ns ## COG: L184871 COG1435 # Protein_GI_number: 15672575 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine kinase # Organism: Lactococcus lactis # 1 188 1 188 189 308 75.0 3e-84 MAQLFFKYGAMNSGKTIEILKVAHNYEEQDKPVVLMTSGLDTRDGVGKVSSRIGLRRDAI PIFEETNVFDLINDLSYKPFCVLVDECQFLNKHHVIEFARIVDELDIPVMAFGLKNDFRN ELFEGSKYLLLYADKLEELKTICWFCHKKATMNLHYIDGKPVYEGDQVQIGGNEAYYPVC RKHYFHPKTVNEEQ >gi|307679028|gb|GL456769.1| GENE 140 153507 - 154580 1399 357 aa, chain + ## HITS:1 COG:SPy1141 KEGG:ns NR:ns ## COG: SPy1141 COG0216 # Protein_GI_number: 15675118 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor A # Organism: Streptococcus pyogenes M1 GAS # 1 356 3 359 359 479 73.0 1e-135 MYDQLQSIEDRYEELGELLSDPAVISDTKRFMELSKEEANTRETVEVYRRYKQVVEGISD AEELLSENLDAEMAEMAKEELSDLKKEKEVLEDRIKILLLPKDPNDDKNIIMEIRGAAGG DEAALFAGDLFNMYQKYAEAQGWKAEVLEANVTGIGGYKEVIMMISGDNVFSKLKYESGA HRVQRVPSTESQGRIHTSTATVVVMPEAEEVEIELADKDIRVDIYHASGAGGQHVNKTAS AVRLTHLPTGIVVAMQDERSQLKNREKAMKVLRARVYDQIQQEAQSEYDANRKSAVGTGD RSERIRTYNFPQNRVTDHRIGLTIQKLDQILAGKLDEIIDALVLYDQTSKLEEMQNG >gi|307679028|gb|GL456769.1| GENE 141 154573 - 155406 235 277 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169796031|ref|YP_001713824.1| putative adenine-specific methylase [Acinetobacter baumannii AYE] # 49 249 74 296 334 95 30 3e-18 MAKRYFEVLNWASSFLEAQGKEGYAIRYVFLERKGWDKTQWLLHMQEEMPKEEEEQLKTD LAQLLTDYPAQYLLGQAEFYGHSFIVNEHTLIPRPETEELVERCLKANPDTPLTVVDVGT GTGAIAISLKLARPNWRVIAIDLSEKALTVAKQNAQALGAGIEFYHGNGLQPVASEKIDL LISNPPYISEQECYLMDASVRTYEPKTALFAENNGLALYQQLIHESQTMLKADGKIYFEI GFQQGAALQKLLSAAYPQKTIKIEKDLSGNDRLAIAE >gi|307679028|gb|GL456769.1| GENE 142 155450 - 156472 1268 340 aa, chain + ## HITS:1 COG:lin2685 KEGG:ns NR:ns ## COG: lin2685 COG0009 # Protein_GI_number: 16801746 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Listeria innocua # 13 336 20 341 345 302 48.0 5e-82 METKKLTKQEIAQAAAAIQAGELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLI VHVNNVEMVKKYVATLPEVATKLVSAFWPGPLTLIFNVPSDTFSKTVTGGLETVAFRMPD NQATLALIEQANVPLVGPSANTSGKPSPTSAEHVYHDLQGKIAAILDDGPTQIGVESTVL DLTAEDGVPVILRPGAITKEQLESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWI ISGQTAEWQAAIQQAKEQQEKIGLFLSDEQAAQLDTENAFVYSYGAETVENATKELFAGL RALDEQGATTIFAQGFAETGLGTAYMNRLKKSANQKFFEK >gi|307679028|gb|GL456769.1| GENE 143 156548 - 157786 1593 412 aa, chain + ## HITS:1 COG:SP1024 KEGG:ns NR:ns ## COG: SP1024 COG0112 # Protein_GI_number: 15900895 # Func_class: E Amino acid transport and metabolism # Function: Glycine/serine hydroxymethyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 2 411 7 416 418 594 72.0 1e-170 MDYKTYDPDLWNAIAREEERQENNLELIASENVVSKAVMAAQGSILTNKYAEGYPGKRYY GGCEFIDIVENLAIDRAKELFGAKFANVQAHSGSQANTAAYLSLVEPGDTILGMDLSAGG HLTHGSPVNFSGKTYNFVSYGVDPSTEVIDYDVVRILAREHRPKLIVAGASAYSRTIDFK RFREIADEVDAKLMVDMAHIAGLVASGLHPNPVPYADIVTSTTHKTLRGPRGGLILTNSE ELAKKVNSSIFPGIQGGPLEHVIAGKAAAFKEALDPSFAEYSQQVIANAQAMTKVFNQAP EARLISGATDNHLLLIEVTGFGLNGKEAEAILDSVNITVNKNSIPFEQLSPFKTSGIRIG TPAITSRGFKEEDAVEVAKLIVQVLKDPENTAVHDEVKAAVAALTKKYPLYN >gi|307679028|gb|GL456769.1| GENE 144 157918 - 158547 927 209 aa, chain + ## HITS:1 COG:SP0745 KEGG:ns NR:ns ## COG: SP0745 COG0035 # Protein_GI_number: 15900640 # Func_class: F Nucleotide transport and metabolism # Function: Uracil phosphoribosyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 209 1 209 209 333 78.0 1e-91 MGKFQVIDHPLIQHKLTMIREKNCGTKVFREVVNEIAMLMAYEVSRDMPLEDVVIETPMG KSTQKTLSGKKVAIIPILRAGIGMVDGILELIPAAKVGHVGLYRDEETLQPHEYFVKLPE DIASRQLFVVDPMLATGGSAIMAIDSLKERGASNIKFVCLVAVPEGVKALQEAHPDVDIY TAALDERLNEDGYIVPGLGDAGDRLFGTK >gi|307679028|gb|GL456769.1| GENE 145 158653 - 158925 316 90 aa, chain + ## HITS:1 COG:no KEGG:EF2548 NR:ns ## KEGG: EF2548 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 90 1 90 90 175 98.0 5e-43 MKKNKKVLHAIAVIASVMSVLMYVSYIPQIYGNLHGEKGNPTQPLVAMINCIFWTIHGLY GDDGETRDKSIIFANVPGIIFGFFAFITAL >gi|307679028|gb|GL456769.1| GENE 146 158999 - 159235 221 78 aa, chain - ## HITS:1 COG:no KEGG:EF2547 NR:ns ## KEGG: EF2547 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 78 1 78 78 134 100.0 2e-30 MSNFNGMVTPVVPSDAGKDFAVDTHVTFLVHGQPQTGVVTKQLKNAAVVEIDETQKNNHL MVHSNGVIVINYKQLKKI >gi|307679028|gb|GL456769.1| GENE 147 159516 - 159842 319 108 aa, chain - ## HITS:1 COG:L54406 KEGG:ns NR:ns ## COG: L54406 COG4392 # Protein_GI_number: 15673594 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 1 105 1 105 108 104 66.0 4e-23 MPSSEYLFLTILGCTVATWLSRILPFLLLKKISLPQKLLEYLSFVPIVIMSALWFSSLFE QRIGHLPSLNLPYLFASFPTILAAILSKNLLLIVLVGIASFALIQNFI >gi|307679028|gb|GL456769.1| GENE 148 159829 - 160536 817 235 aa, chain - ## HITS:1 COG:L54719 KEGG:ns NR:ns ## COG: L54719 COG1296 # Protein_GI_number: 15673595 # Func_class: E Amino acid transport and metabolism # Function: Predicted branched-chain amino acid permease (azaleucine resistance) # Organism: Lactococcus lactis # 1 235 1 235 235 243 60.0 3e-64 MNHQLDARTGIREALPTVFGYIGIGIAFGIVGQAAGFSPLIVSAMSFFIFAGSAQFVTVS MLTGGSPILSIVLATFLVNARMILMGMTIAPYFKAESLGKNLWLGTLLTDESFALGMNKL NHTKGRLSFEWFNAANLISYATWVFSTIIGAYLGRFIANPQALGLEFAVVAMFIGLLYLQ IISDRSMKIALQLIMVLITFGLMSIGLIFIPSNLIVLVVTLIGCGIGVMIKHAFF >gi|307679028|gb|GL456769.1| GENE 149 160533 - 160634 95 33 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKTLIRSLCLIIEGLDFQTHVFKFYTERRKKRE >gi|307679028|gb|GL456769.1| GENE 150 160750 - 161301 521 183 aa, chain + ## HITS:1 COG:BH2909 KEGG:ns NR:ns ## COG: BH2909 COG1396 # Protein_GI_number: 15615472 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 7 173 10 174 189 132 38.0 4e-31 MEINTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNV PYTYLLEDDYVKENPVVKKTETVTQHSEDHSYRVFNYYSDNQERNFELFQFELDPGKKYQ AVGHSKRSTEYVMVIQGSLALEVGGQRYLLPKDAAMYFDANQVHTYINDGTEKVQAVVIN YYT >gi|307679028|gb|GL456769.1| GENE 151 161414 - 162745 1198 443 aa, chain + ## HITS:1 COG:no KEGG:EF2507 NR:ns ## KEGG: EF2507 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 443 1 443 443 656 98.0 0 MNKKIESLGNTALSLLSNTIIVVPYLLYIQLSDGHNLLTILPFVLFYTLRMTGIFLVRGI NLSLTSLGLLKISLLLGLAGSLIGIAGAFSFPLYSISGMLLGLSGALLPPSNQSIRFFLK EEGQKISHSNLLTTVLLTAVLFGALFFKATEIGLALLVYALYFLVALVAIKSYPVSLNEL EEESAEVSRKELILFVIFFVLLLLLRSGRLLTNAVEFDYAIVGACCFFVVAVLFVSHYGK RGAYKVSLEMNLATLINGIVGNYLFLFGSIYVAGVYGRAHMGIYLYLPYVLGMIFAMIVA SKTKQWSNNIPMVGLAGSLGILLLTSWTILGLFLLSFFKSTLNSFLARRYYQETDLPKDS RIFIKYTTQTKGSLFHQFILMALMLVTVVGKGGTTQFLLELTGGKGISMQTSQFLTLIKN SNSLLVLLFIAVYFVVVFRQKKR >gi|307679028|gb|GL456769.1| GENE 152 162943 - 167226 4518 1427 aa, chain + ## HITS:1 COG:lin2282 KEGG:ns NR:ns ## COG: lin2282 COG4932 # Protein_GI_number: 16801346 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Listeria innocua # 799 1022 863 1092 1806 67 28.0 2e-10 MMLSILLAQNFGFAVNAYAVTTTEAQTETTDTAKKEAELSNSTPSLPLATTTTSEMNQPT ATTESQTTEASTTASSDAATPSEQQTTEDKDTSLNEKALPDVQAPITDELLDSMSLAPIG GTEYSQTEVHRELNTTPVTATFQFAVGNTGYAPGSVYTVQLPEHLGYSTVSGDVTGIGAT WAVDAATKTLSITFNQRVSDTSFKVELKSYLTTEAEPLIKIETPGKNKKTYSFDLYEQVE PIQYNERTRTTGLDGEIFYNLDRTLTGNQTLELLTTETPGAVFGKQDNLEPQVFSYDVDI NGQILPETQTLLTPGKDYTLSDNSLGRIAVTVPNMNQQKAYSLSINRTIYLESVSDYSYS FYQQYPTTKLGSLSLKSTTGTNKTTDFTAKTSQTSKVIADREMRSMSYISFQSKGKYYVT IYGTLTETKVGQQIVLESTNGQEIKNPKFTAYGPLYENVKLEDYFDIKTEGGKLTLTATK DSYLRINISDLTMDFDKKDINLSLSTPVIGPDKAIQLLSDQYVEPIAMLNPTNAEATWGN YDRNGAYMSDTEIAVAGSKANPIENLEIKIKHPQYLSVRATKDIYFSYYVLGKDYTVTPT SDGSIIKFTTPITNELEIPIGFNYVPDSLPKDKSIPFDKIPVTMSADGISPIETEVNTNR HIGSERTLQSSKNQFLVNARNDSFDSLSVRTKIPAGADVLFDIYDVSNDQVDSIYPQYWD RGQYFDKPMTPNSPGYPTITFDENTNSYTFDFGKTNKRYIIEYKNANGWIDVPTLSITGT AKEPQSNNNEGSASVSVQNEALDILSATQAANPTLKNVTKTTVTTKNIDNKTHRVKNPTI ELTPKGTTNAQIDLNSITVKGVPEDAYSLEKTTNGAKVIFKDYTLTENITIEYNTVSANA GQIYTETTIDSETLDQMSANKKKVTTAPITLKFSEGDAEGIVYLATATFYTHNIEDENQA IAKVSFELIDNVTHTATEFTTDEKGQYSFDAIMTGDYTLRVTNVPQEYSVDEEYLTGKAI KLVKGDNQLKIPLTKTIDHSRLQVKDTTIYVGDSWKPEENFVSATDKTSQDVPFEKITVS GQVDNTKAGIYPIIYSYEGKEETAHVTVKADQSKLEVKDTTIYVGDKWEAEDNFVSATDK TGQDVPFEKIDVQGTVNVDKIGDYEIVYKNGTKEAKAIVHVRDDSRLQVKDTTIYVGDSW KPEENFVSATDKTSQDVPFEKITVSGQVDTSKAGVYPIVYSYEGKEETAHVTVKPDQSKL EVKDTTIYVGDSWKPEDNFVSATDRDGHAISFDKVQVKGEVDTKKTGEYQISYTTEPVNE TKPAVQSRLFSMFSNETPRQLMTVATVHVIDRNPTPLPDKNENNQTSSSTNQTTIKRSQY VTHIVKPDKQGRYPKTGEQTNGLYRVLGLVVLLIVIISGIVIKKKRK >gi|307679028|gb|GL456769.1| GENE 153 167425 - 168126 513 233 aa, chain + ## HITS:1 COG:no KEGG:EF2504 NR:ns ## KEGG: EF2504 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 233 1 233 233 425 99.0 1e-118 MNQRTIYYGSIGTALFLSSGMLIASVNSYANEATTPGKYTVTYEVDGKIETATITVKENQ TELKLKDTFLGVNQAWSPLDNVVFLKDKEGRPLNLENVIIENNVNTQKVGLYFVTFRYES YLSIAKVYVNPTNFAAEGNMLAELPYSQAMIGPERPIIASRQDKEQQTKQEKKKNKIEQE RVNKKVLLNDELLKKIDTIAPVEITGGAASGSSQFGTTLSFLSGSLLYGTRRV >gi|307679028|gb|GL456769.1| GENE 154 168127 - 169563 1300 478 aa, chain + ## HITS:1 COG:no KEGG:EF2503 NR:ns ## KEGG: EF2503 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 478 1 478 478 865 100.0 0 MEFLLLDDRENLKLAIIRKLEQQYSFSERKDRLCKQLAISPYLLERNITEINADLQRFGL INEMEISEKNNEILLSQSLRISSSIIEEYYLKDSLEFNLLKTIFFHQFTSIKKYGEKHGM SRTVVYKIVDHIRKELGQYGIKLSKNLQLSGNEMAIRQYFTMLYYRIYKDSEELYNQTDL RAVNQLLAQLKGSYENITNFHLFKHYVLVALERTQRKANYFLSQEENPFAFDEESSIYQE IQSWINEVMKATHAEKNAEIQGIIGNLSVYQSELISEHLLSSHNEAITATKTLFFSYMPF TISDEEFYQEIVPIIYQHRFITPFIDITLRIMDLEFFQERYPIVFNSCRQFLFALDCSAF EFSKLSLFFDLLLVLSRLYDQRNEKSTINLYVNFTQGEKYTQFIKEQIKIFESFSIHFHS AIRPDTDLVVSDYLPKTLFSVKCLIWLAPPRASDWQNFGNEIVRINKELQQTKQRKSE >gi|307679028|gb|GL456769.1| GENE 155 169807 - 170994 1276 395 aa, chain + ## HITS:1 COG:L115706 KEGG:ns NR:ns ## COG: L115706 COG0772 # Protein_GI_number: 15672878 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Lactococcus lactis # 3 386 5 388 414 377 52.0 1e-104 MNRKEKTNLDSRIDYGVILPVFLLSLIGMLSLYVALYNDPSKPKIGSLLMKQGLWYLVGG LSIVIIMHFSSKLLWRLTPVFYALGLVLMGLLLKFYDPVLAEQTGSKNWIRFGGTTFQPS ELMKIAFILMLAYIVTMHNVKYVDRTLKSDFWLIAKMLLVAIPVIVLVLLQKDFGTMLVF LAIFGGVFLMSGITWKIIVPVFILAALVGAGTIYLITTETGRDLLSKLGVEAYKFDRIDL WLNPFHTDPDRSFQPALALTAIGSGGLFGKGFNVSDVYVPVRESDMIFTVVGENFGFIGG CFIILLYFILIYRMIRVCFDTNNEFYAYIATGIIMMILFHVFENIGANIGLLPLTGIPLP FISQGGSSILGNMIGVGLIMSMRYQQETVRTRSGR >gi|307679028|gb|GL456769.1| GENE 156 171023 - 171382 420 119 aa, chain + ## HITS:1 COG:lin2520 KEGG:ns NR:ns ## COG: lin2520 COG1393 # Protein_GI_number: 16801582 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Listeria innocua # 1 115 1 114 117 132 56.0 2e-31 MYTLYEYPKCSTCKKAKAWLDQQDVKYQAIDIKATPPSSEQLAKWMKETGLPVRRFFNTS GVLYREQGLKDLVDSFSIEEASQRLAADGMLIKRPILLKDNTFLTNGFKEADYEGVLGK >gi|307679028|gb|GL456769.1| GENE 157 171379 - 171702 529 107 aa, chain + ## HITS:1 COG:lin2519 KEGG:ns NR:ns ## COG: lin2519 COG0509 # Protein_GI_number: 16801581 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system H protein (lipoate-binding) # Organism: Listeria innocua # 11 107 15 114 125 70 39.0 7e-13 MSEMKQIDQLWILPTEAGYKIGLTAETQEDLGKITFATFPKVGQTLAKGDSLIELEAEKA VSEFSSPLSGKVVAINEAADQEPSALDEENAWIAVLADVEPTEFENL >gi|307679028|gb|GL456769.1| GENE 158 171876 - 171956 76 26 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNLLRGARYSQRYAKNQVPYEVIIEK >gi|307679028|gb|GL456769.1| GENE 159 172117 - 173154 1420 345 aa, chain + ## HITS:1 COG:lin2514 KEGG:ns NR:ns ## COG: lin2514 COG1135 # Protein_GI_number: 16801576 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Listeria innocua # 3 342 1 338 340 386 58.0 1e-107 MALIELRHVKKEFSGKAGKVTALKDIDLTVESGDIYGIIGYSGAGKSTLVRLLNGLETPT EGEVEIQGQDIALLPNKELRNFRKKIGMIFQHFNLLWSRTVLENIMLPLEIAGVPKQNRK SRAEELIKLVGLEGRETAYPSQLSGGQKQRVGIARALANNPDILLCDEATSALDPQTTDE VLELLLKINQELNLTVVLITHEMHVIRKICNRVAVMEYGEIVEEGKVIDIFKKPQTEIAK RFIQQEADKNIEETELVVEEMLEQYPNGKIVRLLFHGEQAKLPIISHIVQEYQVEVSIIQ GNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLRVETEVIGNE >gi|307679028|gb|GL456769.1| GENE 160 173147 - 173833 839 228 aa, chain + ## HITS:1 COG:BH3480 KEGG:ns NR:ns ## COG: BH3480 COG2011 # Protein_GI_number: 15616042 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Bacillus halodurans # 20 228 10 218 218 220 61.0 2e-57 MNNRGLASFFDFSQIDISKLQEKTIETLYMTGISIIVVAILGLILGLLLFETSGRKGILS RLLYWLVAIFVNIFRSIPFIILIVLLIPFTKIILGSMSGVKGSLPALIISAAPFYARMVE IAFREVDKGVIEAAKAMGANRFQIIWKVLLPESLPALVSGLTVTTISLVGYTAMAAAIGA GGLGSLAYQDGFQRGQNTVTLVATICILIIVFAIQWLGDTVAKKIDKR >gi|307679028|gb|GL456769.1| GENE 161 173848 - 174666 1118 272 aa, chain + ## HITS:1 COG:lin2512 KEGG:ns NR:ns ## COG: lin2512 COG1464 # Protein_GI_number: 16801574 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Listeria innocua # 3 272 2 276 276 284 53.0 2e-76 MKKRTLWSVITVAIAVLVLGACGNKKSDDSVLKVGASPVPHAEILEHVKPLLEKEGVKLE VTTYTDYVLPNKALESGDIDANYFQHVPFFNEAVKENDYDFVNAGAIHLEPVGLYSKKYK SLQEIPDGSTIYVSSSVSDWPRVLTILEDAGLITLKEGVDRTTATFDDIDKNTKKLKFNH ESDPAIMTTLYDNEEGAAVLINSNFAVDQGLNPKKDAIALEKESSPYANIIAVRKEDENN ENVKKLVKVLRSKEVQDWITKKWNGAIVPVNE >gi|307679028|gb|GL456769.1| GENE 162 175013 - 175828 721 271 aa, chain + ## HITS:1 COG:lin1352 KEGG:ns NR:ns ## COG: lin1352 COG0020 # Protein_GI_number: 16800420 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Listeria innocua # 26 259 23 252 252 315 63.0 5e-86 MLRFFPQKNKYVEEASQYAFDKEGQIPQHIAIIMDGNGRWAQNRRLPRIAGHKEGMDTVK KITKHASHLGVKVLTLYAFSTENWKRPTDEVNFLMQLPVDFFDTFVPELIKENVKVNVMG YQEFLPSHTQDAVKRAIEQTKDNTGMVLNFALNYGARAELLTAMKQIAAEVSEKTYTADE ITEETIADHLMTGFLPTELRDPELLIRTSGEERISNFLLWQIAYSELFFTKALWPDFSGD TLETAIASFQNRNRRFGGLKETTETEGSDPQ >gi|307679028|gb|GL456769.1| GENE 163 175825 - 176625 936 266 aa, chain + ## HITS:1 COG:SPy1964 KEGG:ns NR:ns ## COG: SPy1964 COG0575 # Protein_GI_number: 15675762 # Func_class: I Lipid transport and metabolism # Function: CDP-diglyceride synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 266 1 264 264 241 52.0 7e-64 MRQRVITAIVALIIFIPIIWYGGFAIEIAAVALAVVGVYELFRMKGLTLLSFEGVLSALG AVFLVIPTIKWLNFLPEMQTNFILFYVTVMLLLGASVISKNTYTIEEAGFPVIVSLYVGM GFQNFISARSAGFEVLLFALFIVWATDIGAYLFGRRFGRHKLMPDVSPNKTIEGALGGIL SAVVVAALFLVFTANKGLFPYPMPVMLVLTVLFSIVGQFGDLVESSIKRHYGVKDSGNIL PGHGGILDRFDSLLFVFPIMHLCGLF >gi|307679028|gb|GL456769.1| GENE 164 177389 - 178039 683 216 aa, chain + ## HITS:1 COG:AF0720 KEGG:ns NR:ns ## COG: AF0720 COG2102 # Protein_GI_number: 11498327 # Func_class: R General function prediction only # Function: Predicted ATPases of PP-loop superfamily # Organism: Archaeoglobus fulgidus # 8 215 12 210 214 119 32.0 4e-27 MKKFCLSYSSGKDCLLAMDRLVQAGNQPVALVTTLSDEINRSWFHGIPISVLEAAAEALD LPLVISHNNETNYTEKVVEALHETKKLGAETVCFGDIDIEQNGAWDRQVALSAGLEPQLP LWQENREALVKEFLAKGYTAIIKTVSKEAGIPIKFLGKPLDETFITYLKEHQLDICGENG EYHTLVIDGPLFKKRLNYYTSGIYESPYAYSLIIDA >gi|307679028|gb|GL456769.1| GENE 165 178127 - 178354 405 75 aa, chain + ## HITS:1 COG:no KEGG:EF2483 NR:ns ## KEGG: EF2483 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 75 1 75 75 113 98.0 2e-24 MEETVFFNLGNALASKRDQKELIKEAQIAKDTRKIPGKLIIVEDEENGTHILFELADQTE PSTETKEFKVKKVID >gi|307679028|gb|GL456769.1| GENE 166 178502 - 179233 599 243 aa, chain + ## HITS:1 COG:SA0513 KEGG:ns NR:ns ## COG: SA0513 COG0546 # Protein_GI_number: 15926233 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Staphylococcus aureus N315 # 6 205 4 202 227 63 25.0 3e-10 MENRGILFDKDGTCIRFDTLWQAGLQACFETLSMLAPHHSAEIKKILAIQEQRFLQKHLL DEVLYQELYQELAQFEELVEQGISSRWLEQFFYDYLRKNLKKIEPIGDLKQLFLELKRKN YKIGLATSDTLPATMLIMEYLGLTEMFDFIATGDRYLPKPDADMLQAFCQSCQLKLTEVI MVGDSLVDVFMGTCHGKAGIGVLTGNCQSTDFENFEVAYFRDIHEIPYQELWGNTKKKKI LKR >gi|307679028|gb|GL456769.1| GENE 167 179257 - 179550 171 97 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|255972054|ref|ZP_05422640.1| ## NR: gi|255972054|ref|ZP_05422640.1| predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis T3] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis T3] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] # 13 97 13 97 97 139 100.0 8e-32 MAAVAEWAVVVAPPTQLAAAHSVAAVEVFRFFAEIPTPIKSDKNQPIEPKLSDSQKNSSS TIEDVMAELRNLKMLVDEGVLTEEEFQQKKRQLLQLD >gi|307679028|gb|GL456769.1| GENE 168 179462 - 180271 928 269 aa, chain - ## HITS:1 COG:L188985 KEGG:ns NR:ns ## COG: L188985 COG1512 # Protein_GI_number: 15673333 # Func_class: R General function prediction only # Function: Beta-propeller domains of methanol dehydrogenase type # Organism: Lactococcus lactis # 21 252 22 260 261 123 35.0 4e-28 MKKRLLPIFFLILLAFGLALPVSAAENSIDDDAQLLTPDQINQLKQEIQPLEEKTKASVF IVTTNNNTYGDEQEFADHYLLNKVGKDQNAILFLIDMDLRKVYISTSGNMIDYMTDARIN DTLDKVMDGMSQGNYFAAAQTFVQETQAFVNKGVPGGHYRVDSATGKITRYKVITPLEMV IAFAAALILSLVFLGINISKYQLKFSSYQYPFREKTTLNLTSRTDQLTNSFITTRRIPKN NGGSGGMGGGGSTTHSTGGGTFGGGGRSF >gi|307679028|gb|GL456769.1| GENE 169 180268 - 181413 896 381 aa, chain - ## HITS:1 COG:no KEGG:EF2478 NR:ns ## KEGG: EF2478 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 381 1 381 381 718 99.0 0 METTFTHKCPNCGGPLLFNPKDQKFHCEYCLNIYTEEEVTRYEQQQHEAHLENPSTTTAE ENLTFTAEEESSATQQTETTENEAAADAGTMEIFNCPSCGAQIVTDATTAATYCYYCHNP VVLAGRLSGEFLPENVLPFTIEKDEAIEKFLAWTKKKWFIPRDFFSKNQIDKLTGVYFPY WVVDAEVDGQLQATGTSIRIWRVGDIEYTETKRFNVGRSGKLSFKELVKNALSKNVQQKM VEGVQPFLIDQAVPFKSQYLAGFQAEKRDIEYEAIKKHVQQELQDYSESLLRDSASGYTT LTNVRTDISLNQENNHYMLLPIWLVTYRSQEQSKKVYYYAMNGQTGKVSGVLPISYTRLG LATLGIFAGLLALFLLGGYFL >gi|307679028|gb|GL456769.1| GENE 170 181517 - 182749 1319 410 aa, chain - ## HITS:1 COG:L186490 KEGG:ns NR:ns ## COG: L186490 COG4260 # Protein_GI_number: 15673331 # Func_class: S Function unknown # Function: Putative virion core protein (lumpy skin disease virus) # Organism: Lactococcus lactis # 15 405 1 384 389 566 69.0 1e-161 MGLIKAATSSVGGGLADQWLEVIEPDNMGDTTVMTKGVFVRKDDKRGSNRKGTDDVLTDG SVVHVYPNMMMLLVDGGKIIDYTAEEGYYTVKNDSAPSMFNGSLKDAIAETFSRFKFGGV TPQKQQVFYINLQEIKGIKFGTPAPLNYFDNFYNAELFLRAHGNYSIKITDPLLFYTNAI PKNQTQVDINDINEQYLAEFITALQAAINQMSADGQRISYVPSKSVELSKYMQTALDEDW RTNRGMEIVSVAVASISYTDDSTKLINMRNEGAMLSDPGVREGYVQGSLARGMEAAGKNE GGAMSGFMGVGMGMNANGNYFAQASQTNQQQMQEKQNQQNAQGATDTWTCPQCGTENTGK FCSNCGTPKPTNEKPKLEMKCSECSEIVDLSNGIPKFCPHCGKPFQGVPL >gi|307679028|gb|GL456769.1| GENE 171 182958 - 185000 2312 680 aa, chain + ## HITS:1 COG:lin0461 KEGG:ns NR:ns ## COG: lin0461 COG0768 # Protein_GI_number: 16799537 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Listeria innocua # 1 675 1 676 678 569 48.0 1e-162 MERSNRNKKSSKKPLILGVSALVLIAAAGGGYYAYSQWQAKQELAEAKKTATTFLNVLSK QEFDKLPSVVQEASLKKNGYDTKSVVEKYQAIYSGIQAEGVKASDVQVKKAKDNQYTFTY KLSMSTPLGEMKDLSYQSSIAKKGDTYQIAWKPSLIFPDMSGNDKISIQVDNAKRGEIVD RNGSGLAINKVFDEVGVVPGKLGSGAEKTANIKAFSDKFGVSVDEINQKLSQGWVQADSF VPITVASEPVTELPTGAATKDTESRYYPLGEAAAQLIGYTGTITAEDIEKNPELSSTGVI GKTGLERAFDKELRGQDGGSLVILDDKENVKKALQTKEKKDGQTIKLTIDSGVQQQAFAI FDKRPGSAVITDPQKGDLLATVSSPSYDPNKMANGISQKEYDAYNNNKDLPFTARFATGY APGSTFKTITGAIGLDAGTLKPDEELEINGLKWQKDKSWGGYFATRVKEASPVNLRTALV NSDNIYFAQQTLRMGEDKFRAGLNKFIFGEELDLPIAMTPAQISNEDKFNSEILLADTGY GQGQLLISPIQQATMYSVFQNNGTLVYPKLVLDKETKKKDNVISANAANTIATDLLGSVE DPSGYVYNMYNPNFSLAAKTGTAEIKDKQDTDGKENSFLLTLDRSNNKFLTMIMVENSGE NGSATDISKPLIDYLEATIK >gi|307679028|gb|GL456769.1| GENE 172 185112 - 185831 289 239 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase [Lactobacillus jensenii 269-3] # 43 226 2 185 380 115 40 1e-54 MRILAIDTSNQTLSIAVCENQKILGSYTATVKRNHSLTLMPAIDYLMSQLNLAPTAIDRF VVAEGPGSYTGLRLGVTTAKTLAYTLKKELVGISSLQTLAANCVGQTGLIVPLFDARRKN VYAGAYRFVNGVWQNELPDQHISLRELLEQLKNEPNLFFVGEDVEKFTEEIAQIIPHGEI CDVPQWQIPNAAVLAALGSVAEPVENVHGFLPAYLKKVEAEENWLKTHTPNGESYVEKL >gi|307679028|gb|GL456769.1| GENE 173 185803 - 186357 291 184 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|58336726|ref|YP_193311.1| ribosomal protein ala-acetyltransferase [Lactobacillus acidophilus NCFM] # 5 182 1 179 190 116 36 1e-24 MEKAMWKNFNFVTKYFTKRRQRYITKTIAMNQQEFQLREITYQDIKDLLAIEREVYAGEL PWTMSAFMAELGSKAPHLYLLAAINGKAVGFIGCRIQGTDAHITNVAVHTAYQGLGLGRS LIEETRIFAKKNRCETLSLEVRMSNVKAQRLYRKIGFVSQTVKKGYYDENNEDALEMIID LKEE >gi|307679028|gb|GL456769.1| GENE 174 186365 - 186829 190 154 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119946836|ref|YP_944516.1| ribosomal-protein-alanine acetyltransferase [Psychromonas ingrahamii 37] # 1 149 9 160 162 77 27 5e-13 MLVTKKEISVANIGEELWRFSNSSYTTGSPWTETQFAEDFAQENSEYLFLVENGQWLGYI AYHFILDEAEISHVVVNGQKQHQGIGCQLMKAFKEYVKSRNITQIFLEVRESNTLAQKLY EKTGFRKVAVRKNYYKEPQENAFVMCAKLRKEAQ >gi|307679028|gb|GL456769.1| GENE 175 186826 - 187872 716 348 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229232313|ref|ZP_04356740.1| (SSU ribosomal protein S18P)-alanine acetyltransferase [Cryptobacterium curtum DSM 15641] # 10 319 518 834 860 280 47 2e-80 MTIFTKERKLLLAVESSCDETSVAVIEDGDKILSNIVASQIKSHQRFGGVVPEVASRHHV EQVTICIEEALTEAKVTPEELSGVAVTYGPGLVGALLIGLSAAKAFAWAHQLPLIPVNHM AGHIYAARFVAPLEFPLMALLVSGGHTELVYMKEDGSFEIVGETRDDAAGEAYDKVGRVL GLPYPSGKEIDALAHEGTDTYQFPRAMLKEDNYDFSFSGLKSAFINTVHNAEQRGEVLST KDLAASFQASVVEVLVTKTIRACQEYPVKQLLIAGGVAANQGLREAMRHAISEQLPAVTL LIPPLKLCGDNAAMIGAAAFIEAEKNHFASYNLNAEPGVSFMTISEEG >gi|307679028|gb|GL456769.1| GENE 176 188190 - 189881 2229 563 aa, chain + ## HITS:1 COG:SPy2151 KEGG:ns NR:ns ## COG: SPy2151 COG0018 # Protein_GI_number: 15675893 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Arginyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 563 1 563 563 722 62.0 0 MNNKEIVAKALHDVLNEELTMDQIEQLLENPKSVDHGDVAFPAFSLAKIYRKAPQQIAAE LAEKFDGTNFEKIEVVGPYLNFFMNKEAVSQAVIGAVVKEKNNYGNSTFGNNGNVPIDMS SPNIAKPISMGHLRSTVIGNSIAFILEKIGYQPIRINHLGDWGTQFGKLIVAYKKWGSEE AVRQQPINELLRLYVQFHEEAEEKPELEDEARAWFKKLEEGDQEANELWKWFRSESLKEF DKIYSMLEVEFDSYNGEAFYNDKMDEIVTLLEEKHLLTENQGAEIVDLTEYNLNPALIRK SDGATLYITRDLAAALYRKRTYDFAKSLYVVGNEQSNHFKQLKAVLKELGFEWSDDMEHI PFGLITQGGKKLSTRKGKIVLLEEVLNEAVTLAGNQINEKNPDLANREEVAKQVGVGAVI FHDLKNDRLNNFDFVLDEVVRFEGETGPYVQYTHARAMSILRKANFTPDATQRYALNDKD SWEVVKLLQKFPETVMQAAEKYEPSVIAKHSIHLAQAFNKYYAHVRILDEDAQKEARLAL VYAVATVLKEDLRLLGLHAPEEM >gi|307679028|gb|GL456769.1| GENE 177 190037 - 190537 595 166 aa, chain + ## HITS:1 COG:SPy0357 KEGG:ns NR:ns ## COG: SPy0357 COG1418 # Protein_GI_number: 15674508 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Streptococcus pyogenes M1 GAS # 5 157 3 150 166 178 64.0 5e-45 MTEKWREDEEYLSYVEDLLATEEVQKLAEYTQHMHSTRLEHSISVSYHSYKLAKRWNGNA RATARAGLLHDLFYYDWRTTKFDEGSHAYVHPRIAAKNAEKITELSDLERDIIIKHMWGA TIAPPKYKESYIVTFVDKYCAVKEAALPMTTAMKTKWRQYFGQQSI >gi|307679028|gb|GL456769.1| GENE 178 190573 - 190866 311 97 aa, chain - ## HITS:1 COG:no KEGG:EF2469 NR:ns ## KEGG: EF2469 # Name: not_defined # Def: Cro/CI family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 97 11 107 107 174 100.0 1e-42 MEKNLTLEQVGNFVGVGKSTVRKWETGMIENMGRDKIVALSKILDVSPLEILGIPETEET PFVVPTNIMNIYKQLTTENQEAVFRYAQKKLTEQNYF >gi|307679028|gb|GL456769.1| GENE 179 191078 - 191296 158 72 aa, chain + ## HITS:1 COG:no KEGG:EF2467 NR:ns ## KEGG: EF2467 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 70 1 70 92 118 98.0 6e-26 MESNLIHSKLKMKGKNVEWLANEMTAYGQPISASTIYKKLKGEVVFKASDIKLISQLLDF NNEEIMTIFLVS >gi|307679028|gb|GL456769.1| GENE 180 191339 - 193387 2304 682 aa, chain + ## HITS:1 COG:BH0361 KEGG:ns NR:ns ## COG: BH0361 COG4932 # Protein_GI_number: 15612924 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Bacillus halodurans # 340 648 1183 1491 1661 165 37.0 2e-40 MKKSINKLFSIRLIIFTIIGSNTSIISYAMDNESGTQIRSIAVEYPGEKTEIVATKDWAT VSLSLGISELASGETMTLRMASEKYSYSMTPFEIGDALQVIPNDDGTWTIKALQTLTDYS ADLQLKLRYNQNLSEDFEDQVVFTFEDSQKIVKINIGQYVEKVPPTELVRKVPLGFTSEG RIAWVIYFNYNQAGLSGSEKTTFKFLDNVGPNQTLAIDSIAAYLTKQPILETNGEMIRNL EHDEYSYDASQFFQKNASESGFNYEAEKFEGIPTATGSYLSNKNAYYIYLETIPNENIPS DAVLSNYTYMRISSEGFDAWEDDDIAYITADESSDGTGRGGVVLEKIDAVTAKVLEGAVF KVVNTKTQQVVQETLTTNQAGQIRLAGLEAGQYAFIETKAPTGYKLDATPVPFEIKLEQT QTIRLKKENTRLENQLKVEKVDENNEVKRLAGAEFSLYDQKNNLIEKGVTNENGELLFSN LSPDGEYYLVETKAPNGYELDETKHPISFAGKADYTLTYRVKNKQQVQIGSIKIVKQDKE SKKRLTGAEFQWKDTVTGKTGIVTVGTDGMVTIPNLAVNRTYELTETKAPAGYVLDKTVH KVTLTSAQANKVVTVTIDNVAQKGAIKIVKQDKDSKKRLTGAEFQWKDIVTGKTGIVTVG IDGTITIPNLSVNRTYEITETS >gi|307679028|gb|GL456769.1| GENE 181 193445 - 195190 1649 581 aa, chain + ## HITS:1 COG:lin2282 KEGG:ns NR:ns ## COG: lin2282 COG4932 # Protein_GI_number: 16801346 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Listeria innocua # 13 537 1148 1666 1806 184 31.0 3e-46 MTGKTGTVTVGTDGTITIPNLTVNRTYEITETKAPTGYVLDKTVHKVTLTSAQANKVVTV TVDNVAQFGSIQIIKTDRQTGKRLAGAVFEWKDTTNGYTSRIVTDKNGIAKVSGLSVNRT YELKEVIAPSGYHLDSTIKKVELTTAYANKTLSVNMYDLAKRGNLKLVKQDKDSRKRLAG AQFRWRDTVNGNTGVVTTNSNGEAILYNFSVNRIYEITEIKAPNGYILDRTVHKILLPAN YAGKTYTFTKNNQAQKGAIKIVKQDGYTKQRLAGAQFKFRDTTNNYTATFTANRNGEVLI TGLAGDRIYEVTEIKAPNGYIIDRRVHKVDLRGQGGKTYTLVLNNQAQKGAIKIIKQDTD TRKRLAGAKFRFRDTTNNYTATFTANGNGEVLIPGLSSDRIYEITEIQAPTGYALDSRVH RIDLRGQGTKTYTLVLNNKANYGAIRIIKQDVESKEPLAGAVFEWKDTTNDYTQRVTTGW DGTVTISGLSVNRVYEIREVQAPAGYSRNTTPTRVSLTQNHAGQTIAIVRENRKIPVYNP PPPTYWPGYIPPVTYYNPPVYYNPPKYYYRGCVMVIVVVCW >gi|307679028|gb|GL456769.1| GENE 182 195219 - 195362 198 47 aa, chain + ## HITS:1 COG:no KEGG:EF2465 NR:ns ## KEGG: EF2465 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 47 1 47 47 68 100.0 9e-11 MSQSALPKLGVISTGAFFVVDLIGVILVSIVTAYILYRYFFKRGQIT >gi|307679028|gb|GL456769.1| GENE 183 195359 - 195820 462 153 aa, chain + ## HITS:1 COG:L95846 KEGG:ns NR:ns ## COG: L95846 COG1215 # Protein_GI_number: 15673247 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Lactococcus lactis # 3 143 391 537 824 73 31.0 1e-13 MIYLYQLYKVIMFIFLTYLFTSLFLSFRTRKKTRREVEVAEEFFCYFLVPCVNEEKVIGE TLKKLVALPIKKKIIAIDDGSTDQTKAMMDSIAGPIQVLSRQFPNAQQGKGAALNHAFQI VLTDAEKGHYSWDQVLVGVVDADGFLVKILSMS >gi|307679028|gb|GL456769.1| GENE 184 195892 - 196608 484 238 aa, chain + ## HITS:1 COG:L95846 KEGG:ns NR:ns ## COG: L95846 COG1215 # Protein_GI_number: 15673247 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Lactococcus lactis # 4 237 575 810 824 83 27.0 3e-16 MFIAQDVEFFTINNFIQKARRATKTIGLGGNGQFFRLSMITEHLGYQPWGNALLDDYELT IKLMLKELSIAYIDEAFMAQEALRDVKRFIRQRSRWVQGNLDCLAYLPRVIKSKSLTLRQ KCGIYYFLAQPFINLVAGMLVFVLTGLQLQHLYRLGFSLSLVISFVLAVSISLVFGIFFT INYYRELKNFQLKVPAKLGLIILPFTISYMYLILFVSVVMAYYRFIKGNSTWIKTERN >gi|307679028|gb|GL456769.1| GENE 185 196805 - 198070 1185 421 aa, chain + ## HITS:1 COG:RSc1803 KEGG:ns NR:ns ## COG: RSc1803 COG0038 # Protein_GI_number: 17546522 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Ralstonia solanacearum # 14 400 4 390 431 279 44.0 6e-75 MKKETKQLLSIGGYMAKWVLITAIIGLFMGALSAFFLKSLTYVTDVRLANPWLLFILPIS GVVFTYFYTRFGKNASRGNNLVIEQGNGGEEDIPLRLIPLTLFGTITTHLFGGSVGREGT AVQMGGAIANAVGKVFKLSALERQVIIISGISAGFSSVFGTPLAGTVFGLEVLAIGKVRA EALFPSFFAGLFANFVTESFGVTHTHYPMGKIPTWSVELFVKLFLASICFGLAGWVFSRS IVFLKKTYANWFANVYLRAFLGASIVVLFVLVLNNQRYLGLSLPLLEDAFAGNAQPFDFV GKLFFTVLSLGAGFQGGEVTPLFEIGATLGSSLAPLLHLSIPFLAGLGFIGVFSGATNTP IACFIMGIELFGSEAAVYFFMVCLISFMCSGNSGIYASQQSLYRKGTAEYPLFNALKNRR K >gi|307679028|gb|GL456769.1| GENE 186 198120 - 198398 442 92 aa, chain + ## HITS:1 COG:SP1404 KEGG:ns NR:ns ## COG: SP1404 COG4476 # Protein_GI_number: 15901258 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 2 90 3 91 92 92 55.0 2e-19 MKDYQYPLDLDWTTEEMVIVTNMWTAVEQANETGLPVDKFLTTYQQFKTVVKSIGEEKRL GREFENASGYSLYRTLQQAKKQGSGKLKLGDD >gi|307679028|gb|GL456769.1| GENE 187 198399 - 199181 1073 260 aa, chain + ## HITS:1 COG:BS_yktC KEGG:ns NR:ns ## COG: BS_yktC COG0483 # Protein_GI_number: 16078531 # Func_class: G Carbohydrate transport and metabolism # Function: Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family # Organism: Bacillus subtilis # 1 257 1 262 265 180 37.0 3e-45 MTETQKFIQTIQSWLFEAADVIRMNLESELTVQQKNGRTDLVTNMDEQTQEFLMNKIQTN FPEDQILGEEKGYNTLKSFAGRVWIIDPIDGTMNFVMERENFCIMLAVYEDGIGKLGFIY DVMREELYWGGKGLGVYRNNQLLKAPTMKALADGLWGMNAYMHGKNIHHATEIGQASMGV RISGCAGLEIIAMLKGNHHGYLSNLSPWDYAAGLVLLEEFGFKYSGITGKPLTFAGREYF IAATPETYDEVFTRYLNESE >gi|307679028|gb|GL456769.1| GENE 188 199402 - 201237 2249 611 aa, chain + ## HITS:1 COG:SP0681 KEGG:ns NR:ns ## COG: SP0681 COG1217 # Protein_GI_number: 15900582 # Func_class: T Signal transduction mechanisms # Function: Predicted membrane GTPase involved in stress response # Organism: Streptococcus pneumoniae TIGR4 # 2 611 3 613 613 1019 86.0 0 MKYRDDIRNVAIIAHVDHGKTTLVDELLKQSDTLDGHTQLQERAMDSNALESERGITILA KNTAVDYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALE QKVTPIVVVNKIDKPSARPEHVVDEVLELFIELGADDDQLDFPVVYASALNGTSSESDDP ADQEPTMAPIFDKIIEHVPAPVDNSDEPLQFQVSLLDYNDYVGRIGIGRVFRGTMKVGDQ VALMKLDGSVKNFRVTKILGFFGLQRVEIDEAKAGDLIAVSGMEDIFVGETVVDVHNQEA LPILHIDEPTLQMTFLVNNSPFAGREGKYITARKIEERLMAELQTDVSLRVDPIGPDSWT VSGRGELHLSILIENMRREGYELQVSRPEVIEREIDGVKCEPFERVQIDTPEEYMGSVIE SLSLRKGEMQDMINAGNGQMRLIFLAPARGLIGYSTEFLSMTRGYGIMNHTFDQYLPMIQ GTIGGRHQGALVSIDTGKATTYSIMSIEERGTVFVEPTTEVYEGMIVGENNRDNDLTVNI TKAKQMTNVRSATKDQTSVIKKPKKLTLEESLEFLNEDEYCEVTPESIRLRKQILNKNER EKASKKKKKAE >gi|307679028|gb|GL456769.1| GENE 189 201555 - 203324 2046 589 aa, chain + ## HITS:1 COG:lin2900 KEGG:ns NR:ns ## COG: lin2900 COG0514 # Protein_GI_number: 16801959 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA helicase # Organism: Listeria innocua # 5 583 6 586 590 712 58.0 0 MSALQELLKDTFGYDDFRPGQETIIRHVLRQENVLGIMPTGGGKSICYQLPALLLDNLTL VISPLISLMKDQVDALNLMGIPATYINSTISYQEMNHRIQLAVNKEVKLLYVAPERLESY DFQQMLTHVPIDLLAVDEAHCISQWGHDFRPSYLRLAEIIDQFQQQPTVIALTATATPQV AEDIVKQLRIPSENEIKTGFARENLSFQVVKDQNRDVFLLEYLKMNTGQSGIIYASTRKE VERIYHLLESKKIAAGMYHGGMSEQLRSENQEAFLYDQVQVMVATNAFGMGINKSNVRFV IHAQVPGNIESYYQEAGRAGRDGLPSDAVLMFAPQDLQIQQYFIEQSEMTIDYKQKEYLK LREMSQYANAQMCLQKYILRYFGEEGTDCGRCSNCLDNRELVDITVDAQKVLSCVKRMGE RFGKGLVGKVLTGSKDQKIDQWHFDRLPTYGLMKGRTQKEVTQLIDYLTAERYLIPSDGQ FPLLSVSTEGVQVLLGERKVFRKEDQKVRKVAVDDALFERLRELRMDMAQEAGVPPYVVF SDSTLKEMCEKLPQTTIQLLQIKGVGQNKLDKYGTAFLEVIKEYQETKK >gi|307679028|gb|GL456769.1| GENE 190 203551 - 203856 410 101 aa, chain + ## HITS:1 COG:lin1058 KEGG:ns NR:ns ## COG: lin1058 COG4838 # Protein_GI_number: 16800127 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 10 84 12 86 93 77 53.0 6e-15 MDEGISKKFAIQLLEDDAERIKMLIRNQKNSLCISQCKAFEEVVDTQMYGFSRQVTYATR LGILTNDEGHRLLSDLERELNQLYTDVYEETQEKNEIGKEG >gi|307679028|gb|GL456769.1| GENE 191 203860 - 205068 1277 402 aa, chain + ## HITS:1 COG:SP1067 KEGG:ns NR:ns ## COG: SP1067 COG0772 # Protein_GI_number: 15900936 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 4 393 2 398 409 342 48.0 6e-94 MPNKVKKRHLLDYSIFIPYLILSIVGLIMVYSSTSALQVMKGFSPTSFVINQVAFWVVGL VAMFFIYKMKTSVFQNRSFIMFAIAVITVMVLAVRIPGIGKEINGARGWIEIGGFSMQPA EYLKIMVVWYLSYILARRQKTINGGMDQFKQAAGRPLMLVFVLIALVAIQPDFGNAAILT LITIVMVLASGINYMYTYLVGGLGILGSITAIQLLIMSKGKIFPARYQYIYNRFAVFKNP FLDERNLGHQLANSYYAISNGGWFGKGLGNSVQKKGFLPEAHTDFIFAITLEELGIIGGL AILGLLMFMIARIILVGVRSKKPFNSLMCIGIGTMLLIQVFINVGGITGIIPLTGITFPF LSQGGNSLLIISIAVAFVLNISADETRQKLENEYYLSLEQNQ >gi|307679028|gb|GL456769.1| GENE 192 205101 - 208529 4119 1142 aa, chain + ## HITS:1 COG:L63652 KEGG:ns NR:ns ## COG: L63652 COG1038 # Protein_GI_number: 15672651 # Func_class: C Energy production and conversion # Function: Pyruvate carboxylase # Organism: Lactococcus lactis # 1 1139 1 1136 1137 1654 70.0 0 MKKVLVANRGEIAIRIFRACTELDIQTVAIYAAEDEYSVHRFKADEAYLVGKGKKPIEAY LDIENIIQIAKKSGADAIHPGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAK EAAVAAGIASIPGSDGPVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREG YERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKVVE VAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLVEGDQFYFIEVNPRVQVEHTITE MITDIDIVISQLQIAQGLDLHKDMHLPKQNELTLKGAAIQCRITTEDPLNQFMPDTGKID TYRSPGGFGVRLDVGNAYSGYAVTPYFDSLLVKVCTHGFSFEQAISKMQRCLKEFRIRGV KTNIPFLQNVVSYPAFQSGEAKTTFIDNTPELFEFPRMRDRGNKTMKYIGEVTVNGFPGI ERTEKKYFEAPRVPTDIEVPEKVITAKNILDAQGATAVIDWVKNQESVLMTDTTFRDAHQ SLLATRVRTQDFKAIAGLTDAALPELFSSEMWGGATFDVAYRFLTEDPWQRLRKIRQLMP NTLLQMLFRGSNAVGYQNYPDNVIEEFIKESARQGVDVFRIFDSLNWIPQMEKSIQVVRD TGIIAEAAICYTGDINDPARAKYNVQYYLDMAKELENLGAQIIAIKDMAGLLKPQAAYRL ISELKAATDLPIHLHTHDTSGNGIITYSAATKAGVDIVDVAMSAMSGATSQPSMNSLYYA LVNGERTPTINIDNAQKINHYWEDVRMYYQPFENGLNAPQTEVYMHEMPGGQYSNLQQQA KAVGLGHRWDEIKKMYHTVNLMFGDIVKVTPSSKVVGDMALFMVQNHLTEQDVYARGEEL SFPESVVTFFQGDLGQPVGGFPKELQRIILKGRPAFTERPGDLAAPVDFAKVQEELAEKI GYQPKLEEVLSYLMYPQVFLEYRQKYETFGDITLLDTPTFFNGIRQGETLEVQIERGKTL IIRLDEIGEPDIDGNRVLFFNLNGQRREVLVKDASIKSAVQVKQKAEPTNKEQIGATMSG SVLQVLVKRGDKVEKGQPLLITEAMKMETTIEARFAGTVDHIYVEEGEAISSGDLLLEVK EK >gi|307679028|gb|GL456769.1| GENE 193 208546 - 209670 977 374 aa, chain + ## HITS:1 COG:lin2162 KEGG:ns NR:ns ## COG: lin2162 COG2340 # Protein_GI_number: 16801228 # Func_class: S Function unknown # Function: Uncharacterized protein with SCP/PR1 domains # Organism: Listeria innocua # 1 236 1 246 351 90 26.0 6e-18 MKRFWAFTAVFLTVLLIGYLEPVFFPAEKPTETAQSGRLSSAHTAVPHEELPASGYAAYI GKDVETFIRQFGNPKEKIKTGRTYELWTFGLTMNDYLEVNVRENKVIAIKAFNNDKMIEP FKIDMKLADLSDLMTIYSNFAFNFHHEAYDVELMEEDMNYRPLVAFDNGSFAVLFFNQRT GGLMAVNYVNKETLLTEMPYQLNEGSPLPVDITQSMTFDPVQSNQAIYVMNLVKQQENQA AFSVSTQSQKDAQTLYQTLANHTPTILSANRQAELLQTREEHTAIHPFQLTKDEFSLLVK TSKLSLREPAGIFQEPVYDSTFTILSWFSDPQYDSYFAESETTELGVAFSNEGVLVLLEK RPENRQITESSEKL >gi|307679028|gb|GL456769.1| GENE 194 209667 - 210101 222 144 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764796|ref|ZP_02171849.1| ribosomal protein S17 [Bacillus selenitireducens MLS10] # 7 141 12 143 146 90 35 1e-16 MIVTEHLFAIEDQTECLISALLESDAVQNYKETKKAMYASAEVAQLQKAFLEAKSAFERV EAYGIHAPDFREKQRALRKAKRALDLNEIVANYRFAETNVQTLLDTIGLKIAQLISEDIK VDAGNPFFERGKKHSGCGGSCHAS >gi|307679028|gb|GL456769.1| GENE 195 210091 - 210441 476 116 aa, chain + ## HITS:1 COG:BH2594 KEGG:ns NR:ns ## COG: BH2594 COG4471 # Protein_GI_number: 15615157 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 14 91 6 83 92 70 46.0 7e-13 MQAKEGKEFTLQERRCLIVWVYTLKPLKQLRRYGLIHYVSRKMKYVVIYMNEENIESNME KINQLHFVRSVDKSYRPDVEMNFAEKIGTKAAYQEQEDDGYVVEELSTEIRLAENV >gi|307679028|gb|GL456769.1| GENE 196 210540 - 211094 649 184 aa, chain + ## HITS:1 COG:L22498 KEGG:ns NR:ns ## COG: L22498 COG0742 # Protein_GI_number: 15674145 # Func_class: L Replication, recombination and repair # Function: N6-adenine-specific methylase # Organism: Lactococcus lactis # 1 180 10 186 188 214 61.0 5e-56 MRVISGEYGGRRLKALDGDNTRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAV SRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD PPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKTVKLPETIGTLEKTRETVYGITQVTIY RQEA >gi|307679028|gb|GL456769.1| GENE 197 211096 - 211587 334 163 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 [Bacillus selenitireducens MLS10] # 2 158 3 158 164 133 43 1e-29 MRKIALFPGSFDPMTNGHLNLIERSAKLFDEVIIGVFINTSKQTLFTPEEKKYLIEEATK EMPNVRVIMQETQLTVESAKSLGANFLIRGIRNVKDYEYEKDIAKMNQHLAPEIETVFLL AEEPYAHVSSSLLKEVLRFGGDVSDYLPPNIYHALKQKKNDWS >gi|307679028|gb|GL456769.1| GENE 198 211592 - 212644 471 350 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 [Bacillus selenitireducens MLS10] # 1 346 1 343 350 186 33 1e-45 MNKKTEKFSFKSLIPMVLALLLIGLFIVPIPYYIEGPGTTENLKEFVTVDGKKDTQSGAF YLTTVGIRSATIFSAIKANFSDFQEVMSKKELMGDSSNSEYNRIQQYYMDSSKNAAIEQA LKLAKVPYEMKFKGVYVLAMEDNSSFKGKIEVGDTVTGVDGKSFKSSEELMNYIKAQKVN QKVTVQFIQDGKAKEATGKLIELPTDKKAGIGIGLTDHTEIDSSIPVSIEAGDIGGPSAG LMFTLQTYEQLSHKDLRKGHEIAGTGTMNSQGIVGRIGGIDKKVVTASENGAEIFFAPDD EITSEMKKVEPKIKSNYQEAQEAAKKIGTKMKIVPVKTVQDALNYLEKLK >gi|307679028|gb|GL456769.1| GENE 199 212740 - 213384 748 214 aa, chain + ## HITS:1 COG:lin1519 KEGG:ns NR:ns ## COG: lin1519 COG1555 # Protein_GI_number: 16800587 # Func_class: L Replication, recombination and repair # Function: DNA uptake protein and related DNA-binding proteins # Organism: Listeria innocua # 67 212 57 199 200 132 47.0 4e-31 MDWLKQLPKKWLLLGSGASIVILITLLVGIYLMVNKEAQVDTTMWEETSLTTMAEVATDA TKERAETMIYVDIKGAVKVPGIYQLKNQQRIWDALALAGGVSEEADTTQVNYAQKVKDQM IIYVPKKGESVPQSLETLQESAPAQQNQEEKINLNTATEAELQTISGIGAKKAQEIIRFR DEQGPFKTVEELKNVPGIGEKTVERLKDMLTVTG >gi|307679028|gb|GL456769.1| GENE 200 213507 - 214010 497 167 aa, chain + ## HITS:1 COG:BH1334 KEGG:ns NR:ns ## COG: BH1334 COG2131 # Protein_GI_number: 15613897 # Func_class: F Nucleotide transport and metabolism # Function: Deoxycytidylate deaminase # Organism: Bacillus halodurans # 1 141 1 141 188 235 75.0 2e-62 MERIPWDQYFMGQSVLLSLRSTCTRLTVGATIVRDKRIIAGGYNGSVSGGTHCIDEGCYV VDNHCVRTIHAEMNAILQCAKFGVPTEGAEIYVTHFPCLQCTKMILQAGIKKIYYLKDYR NDAYALNLIEQVGATVEKVTLVPKYFAELQWGEEFATLEDNPSSAEE >gi|307679028|gb|GL456769.1| GENE 201 214333 - 216309 1350 658 aa, chain + ## HITS:1 COG:SPy1408_2 KEGG:ns NR:ns ## COG: SPy1408_2 COG2333 # Protein_GI_number: 15675328 # Func_class: R General function prediction only # Function: Predicted hydrolase (metallo-beta-lactamase superfamily) # Organism: Streptococcus pyogenes M1 GAS # 351 638 1 285 299 221 41.0 4e-57 MAFYQLKSVKEKQQWQQLTTTIQATAVGILDSPQGQTNKNGFNYQLFLKNQGIEAILFIE EIGQPRSFFSWRFKEIISGWRKWAMVHIQKNFAETSAMYMNALLLGFRNEEFAEISDKFS ALGILHLFSLSGMHVSFFLRLFRLLMLRIARRTQESYFLWQCDFSLIYAGLTGFSVSVMR ALLQTNLNTFNRRFNWQVPALDCWSLTLLVHLIVQPTLFFSVGGQFSYLLSFVLLFLEKT LVGYSSPFIKNCVGSFLLAVASLPILVQSFYEWPLLGSFLTFLLLPIFERFLLPLLTLSI FLVIIMPARYLAALLEPLFLTMNGLFEWVLVHLNPKLTIGYLNSWIQISLLLLIGFSMIY LADKSKKIFFSIGLLIVLINSKYLSPIGIVAMIDVGQGDSLFIQAPFHRKNTLIDTGGRL SFDKEAWRQRKNSRSGAEYSVIPFLKSQGVKRLDEVIITHAHEDHFGDLLAIAQKVPISV LYFPKGAAEANFSFRQVLKQLQKSGTDCRPILAPKRINGPVSFQILSPNKSSIGGNNDSI VFSTQLGGRHFLFTGDLEAEGEEQVLARYPQLKIDILKVGHHGSKTSSTKRFIKQLNPRE ALISAGLNNRFKHPHQETLATLEEQKINYYRTDLQGMIYYQWLPWQGLSKAKFVKEQD >gi|307679028|gb|GL456769.1| GENE 202 216367 - 217395 1162 342 aa, chain + ## HITS:1 COG:BS_yqeN KEGG:ns NR:ns ## COG: BS_yqeN COG1466 # Protein_GI_number: 16079610 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, delta subunit # Organism: Bacillus subtilis # 8 326 7 325 347 243 43.0 4e-64 MELQKALKEVREQKIAPVYLLIGTELYLTELFKTTLMKELLTEEDDQFNFFSFDMEETPL SAAIAEAETIPFFGDYRLVFVENPYFLTAERKTNGVEHDVNLLLNYLESPSPTTVLVFMA SYEKLDERKKITKALKKNATVVDVNPMDEKAIRQYISQTIESEGYTIRSDAFDLLLQLTD LNLSKIMGELQKLYLYALETKTITRGAVQELVPKSLEHNVFDLTNEVLSGNSEKAVQLYE DLLLQGEETIKLNAILLNQIRLFLQTKILAKMGYQQANIADTLKVHPYRVKLALQQVRRF ELSRLERLYDELVENDYRMKTGQMDKELLFQLFILKLTAQAK >gi|307679028|gb|GL456769.1| GENE 203 217447 - 218388 1303 313 aa, chain - ## HITS:1 COG:L157055 KEGG:ns NR:ns ## COG: L157055 COG1893 # Protein_GI_number: 15673305 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate reductase # Organism: Lactococcus lactis # 1 313 1 312 312 402 61.0 1e-112 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIF SPEEIDHQNEQVDLIIALTKAQQLDAMFKAIQPMITEKTYVLCLLNGLGHEDVLEKYVPK ENILVGITMWTAGLEGPGRVKLLGDGEIELENIDPSGKEFALEVVDVFQQAGLNPSYSSN VRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLISEFAAVAEKEAIHLDQA EVYTHIAQTYDPNGIGLHYPSMYQDLIKNHRLTEIDYINGAVWRKGQKYNVATPFCAMLT QLVHGKEELLGAK >gi|307679028|gb|GL456769.1| GENE 204 218578 - 219114 372 178 aa, chain + ## HITS:1 COG:lin2060 KEGG:ns NR:ns ## COG: lin2060 COG1607 # Protein_GI_number: 16801126 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA hydrolase # Organism: Listeria innocua # 3 173 5 172 172 166 49.0 2e-41 MTKEKFCRESRVIQTHRVFPFDLNPFGALFGGKLMSLIDDAASISVSRHCRRGAVTASLD NLNFLKPLKENHSVCVETFVSGVHHKSMEVFVKVVGEDLTTGKRYLAATCFTTFVAIPSH MNPESDFQLAAVVPETAEEKLICSNYETRRQQRLALREETKLFSQHLTTDLPWIDSPL >gi|307679028|gb|GL456769.1| GENE 205 219201 - 219515 509 104 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227519840|ref|ZP_03949889.1| ribosomal protein S20 [Enterococcus faecalis TX0104] # 1 104 1 104 104 200 100 5e-50 MITVELHWLTSVKPKSSEVKQMPNIESAIKRVRTSANANAKNSSQTNAMRTAIKKFEEAV AAGADNVDALYNEAVKAVDMAATKGLIHKNKANRDKIRLSKLAK >gi|307679028|gb|GL456769.1| GENE 206 219663 - 220697 975 344 aa, chain + ## HITS:1 COG:SA0619 KEGG:ns NR:ns ## COG: SA0619 COG0306 # Protein_GI_number: 15926341 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate/sulphate permeases # Organism: Staphylococcus aureus N315 # 24 333 20 324 335 196 39.0 5e-50 MKNGGVFVSIALLVTITLVMGVIFVNGWTDAPNAIATAVSTRVLKPNVAIWMAVVMNFLG ALVMTFFNAQVAETISNIVSFDANGNASQVALAASLFSIVVWAVAAWYFGIPTSESHALI AGLTGSAMALGGLGAVNGSEWIKVLVGLVVSTVMGFGGGYLIAKLVVKAFSAVPRRKANK FFTVGQAFGAGANAFLHGAQDGQKFMGVFMLVLFYNNLVEKTGGGFVIPLWVMVLCSITM GIGTSVGGMRIIKSVGMDMVKLERYQGFTADLSTAICLFLASAFGIPVSTTHTKTTAIMG VGASKRISSVDWRIVKEMLIAWILTFPGCGLIAYVMSKLFIAIF >gi|307679028|gb|GL456769.1| GENE 207 220710 - 221333 837 207 aa, chain + ## HITS:1 COG:RSc1312 KEGG:ns NR:ns ## COG: RSc1312 COG1392 # Protein_GI_number: 17546031 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate transport regulator (distant homolog of PhoU) # Organism: Ralstonia solanacearum # 5 206 11 207 208 98 32.0 6e-21 MARKKQFDYFGELNQLATNAYEAAKVLQEIVDNYSLENLVKKSEAIHQLEKENDEIVRKI LNELYISFITPIDREDIVDITDHLDNIIDSINSLSYLLDHLVVEEMIAPALELTAYIVKA TEGVKSATKEFAKFKNSKTLVSLIDEVNTIESQGDKLYSSAMKDLMTNEKDLLKVIKWKD VYDQLERTINDCESAVNIIVGIVIKNT >gi|307679028|gb|GL456769.1| GENE 208 221352 - 222137 735 261 aa, chain + ## HITS:1 COG:lin0339 KEGG:ns NR:ns ## COG: lin0339 COG3394 # Protein_GI_number: 16799416 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 261 1 261 261 404 71.0 1e-113 MVKVIVDADDFGMSEAINHGIIKSYVDGLTTSTLLMPNLPTAEHAVALAKNYPGLFVGQH TNFLLGKPCADPCMIPSLVDEQGNFHRSSYYRQQKQVTFVYEEVRLETIAQLTRFKELTG HYPEHFDCHSIGDEVVDQVFLELAEEYGLHTTLKYSGEKEYPPQQGYFQVTHLLESGALS YIHEGVSVENFLEDDFGLLRMPESAIAEMHFDVGYLDQFVLDNSSYTTLRCKELATICDP RVRQWFEEQGIERITFGDLKK >gi|307679028|gb|GL456769.1| GENE 209 222176 - 223042 930 288 aa, chain - ## HITS:1 COG:L58643 KEGG:ns NR:ns ## COG: L58643 COG1968 # Protein_GI_number: 15674174 # Func_class: V Defense mechanisms # Function: Uncharacterized bacitracin resistance protein # Organism: Lactococcus lactis # 20 287 5 279 284 299 60.0 5e-81 MYFAFISERNGDMLFANLWKAIILGIIEGITEWLPISSTGHLILVDEFIKLDLSKDFMEM FNVVIQLGAIMAVVILYFHKLNPFSPKKNGEEKKDTWILWSKVLVACLPAAVIGLKFDDY LDAHFYNFLTVSIMLIVYGIAFIIIEKRNKNVAPKCTNLKDFTYKAALIVGAFQVLALIP GTSRSGATILGAILIGASRFVATEFSFFLGIPVMFGASFLKIFKFLAKGNTFGSEEIIIL LTGSIVAFVVSIIAIKFLLNYLKKNDFTVFGWYRVILGAILIGYWLFS >gi|307679028|gb|GL456769.1| GENE 210 223188 - 223682 694 164 aa, chain + ## HITS:1 COG:SP0758_3 KEGG:ns NR:ns ## COG: SP0758_3 COG2190 # Protein_GI_number: 15900652 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIA components # Organism: Streptococcus pneumoniae TIGR4 # 17 159 5 147 151 138 51.0 6e-33 MFGFLKKKNEVVENNTMYAVANGTIIPISEVNDPVFSQKMMGDGYAVVPENGEIYAPIEG EVLSVFQTKHAIGLKMTNGLEILLHMGIDTVELNGAPFTIKVKEGDQVTADTVVAIADLE AIKAAGKGTEMVVIITNMDKVAQFSLEKTGVVTAGTPVGSATAN >gi|307679028|gb|GL456769.1| GENE 211 223980 - 225089 1105 369 aa, chain + ## HITS:1 COG:L143292 KEGG:ns NR:ns ## COG: L143292 COG3589 # Protein_GI_number: 15673111 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 357 1 349 353 327 47.0 3e-89 MYGISVFLGEEITNDTIIYIKKMKALGFDGIFTSLHIPEDDTSLYRQRLTDLGAIAKAEK MKIMVDISGEALKRAGFSFDELEPLIELGVTGLRMDYGITIEQMAHASHKIDIGLNASTI TLEEVAELKAHQADFSRLEAWHNYYPRPETGIGTTFFNEKNRWLKELGLQVFTFVPGDGQ TRGPIFAGLPTLEKHRGQNPFAAAVGLMADPYVDAVYIGDPIISERTMAQFGYYHQTNQF LLEVAPSKSRYLKRILGSHTNRLDAARDVLRSELSRTSEMFRKDEIATIELEQTEARPVG TVTIDNEKYGRYMGEIQVTLVDLPKDEKVNTITRIIEKDQTILPLIKAGNQFTLVTEGTI ENEFRKLNN >gi|307679028|gb|GL456769.1| GENE 212 225064 - 225954 1241 296 aa, chain + ## HITS:1 COG:L144334 KEGG:ns NR:ns ## COG: L144334 COG2103 # Protein_GI_number: 15673112 # Func_class: R General function prediction only # Function: Predicted sugar phosphate isomerase # Organism: Lactococcus lactis # 1 296 2 297 297 408 74.0 1e-114 MNLENLTTERRNENTMGLDEMSVKEALQKMNQEDQKVAMAVGQELAAIEPVVEAIIKSFN QGGRLIYMGAGTSGRLGVLDAAECVPTFGVEPEMVQGLIAGGQKAMTVAVEGAEDSKELG RQDLVDLKLSANDIVVGIAASGRTPYVIGGLEYATTVGAATATVACNKNAEISKYAQMPI EVDAGPEFLTGSTRLKSGTAQKLILNMLSTISMIGIGKVYNNLMVDVKPTNEKLVERSKR IIMEATGCSYEVAELKFVEAEENVKLAIVMILTDSTKEEATQKLIDGNQFIKNTLN >gi|307679028|gb|GL456769.1| GENE 213 225977 - 227431 1898 484 aa, chain + ## HITS:1 COG:L145238_2 KEGG:ns NR:ns ## COG: L145238_2 COG1263 # Protein_GI_number: 15673113 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Lactococcus lactis # 117 463 1 348 348 431 72.0 1e-120 MAEERIKRIADGIYKEVGGQENVDKVIHCMTRVRMDIRDYDKVDIEGLKKIDGVMGVVED DTLQVVVGPGTVNKVAQEMVDQAGVKLGEPFNHDTATDASAGKSGKDLVEEKAAQMKAQQ KAKQNNTSPFKKVLKAISSIFVPMIPAFVGAGIIGGIAAVMSNLVVAGDISASWQQYIDV LNIIKNGIFAYLALYTGINSASVFGATPALGGVIGAVTMLTGMNPDAPISNIFTGGTLSA GQGGIIGVIFAVWLLSLLEKQLHKIVPESIDIIVTPTISLLVIGLATIFLIMPVAGAISN GLVGIINVVLEKGGMVAGFTLGLTFLPMVMFGLHQILTPIHIEMINQTGMTLLLPILAMA GAGQVGAALALWIRCKSDKKLVEMIKGALPVGILGIGEPLIYGVTLPLGRPFITACIGGG IGGAVIGAFGNVGAIAIGPSGVALIPLIANNQWLAYVLGLLAAYAGGFVATLFFGIPKDM QTTK >gi|307679028|gb|GL456769.1| GENE 214 227518 - 228366 1112 282 aa, chain + ## HITS:1 COG:L147291 KEGG:ns NR:ns ## COG: L147291 COG1737 # Protein_GI_number: 15673115 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 4 282 2 282 283 199 40.0 4e-51 MQQNIVLSIQDRLQQLPKSERKIAEYILKNTETVISMNAQELAKQAGSSPAAIIRFCHSM DVNGFTELKLLLSANLGQMKQQMYTEVTKGESTADIKQKLQARFVHVVERSGQTLEDVAV NEAVDLLEKTEVIFVYGLGASSLVAQDIYQKFTRLGRTVFTTLDHHLFASMLGSTEKPSV FIVISNSGTNKEASTLADLAKQQGIPIVSITQDEKSVIGEKSDIVLQTSSGEDVPLRSAA TVSLVAQLYVVDVLFFAYAAKNYKETLEKIQISRKNVERLKE >gi|307679028|gb|GL456769.1| GENE 215 228422 - 229126 981 234 aa, chain - ## HITS:1 COG:SPy1766 KEGG:ns NR:ns ## COG: SPy1766 COG0406 # Protein_GI_number: 15675611 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Streptococcus pyogenes M1 GAS # 5 233 4 231 235 255 57.0 6e-68 MTEATTLYIIRHGKTMFNTIGRTQGWSDTPLTKQGEEGIYHLGLGLRDIDFREAYSSDSG RAMQTAQIILQEHQNHQNIPYLTDKRIREWCFGSLDGGYDGELWGVVPRILAFKSYEDMM TTKITYRELANAIIEADTADWAEPYEVIRDRVWSGFEDIAHHREKNGGGKVMVVSHGLTI SFLLSLIDASLPMQMALENGSVTTLTYEKGTFTIQGINDISYIEKGKKIAEKRH >gi|307679028|gb|GL456769.1| GENE 216 229167 - 229793 779 208 aa, chain - ## HITS:1 COG:lin2270 KEGG:ns NR:ns ## COG: lin2270 COG0491 # Protein_GI_number: 16801334 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Listeria innocua # 1 208 1 205 205 283 66.0 2e-76 MIQIEQIRTGVIQENCYLVYNEEALLIIDPGAEGAKLIQEITRLGKKPAAILLTHTHYDH IGAVEELRHHYQIPVYVSPLEQAWLSNPILNLSGLGRHDDIANIIVQPAEHEFKLTDYEI GGMKFSVVPTPGHSIGSVSFVFDDFVVVGDALFKGSIGRTDLHTGDMQQLLHSITTYLFT LPEEFPVYPGHGDATTIQHEKATNPFFN >gi|307679028|gb|GL456769.1| GENE 217 230013 - 231398 1670 461 aa, chain + ## HITS:1 COG:SPCC1672.03c KEGG:ns NR:ns ## COG: SPCC1672.03c COG0402 # Protein_GI_number: 19075374 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Schizosaccharomyces pombe # 54 461 58 463 527 269 36.0 1e-71 MFHFVIKGTGFSSKNLQEIKVYEETLFCIDEAGVIQEIIEPDAEAYETVLAEQKEAQRFQ ELPQDSYLLPGFVDLHVHAPQWAQSGTALDIPLYEWLNTYTFPLESKFADLTFAQQVYDE LVTQLLANGTTTALYFATIHYEASRRLAEICAEKGQRGLIGKVVMDDLNENPEYYRDQTT QQALEETERFIQEIQTLAQQTKQGVYPVVTPRFIPSCTEEALKGLGELAAKYQVHVQSHC SESDWEHQFVQERFGKNDAQALNDFGLLTEKAVMAHAGFLEEADMNLFHETGTAVAHCPI SNAYFGNAVTPIAKLVHQHQVEVGLGSDLSGGFSPSLFDNLKQAVISSRMLEDGVDATKK PEVRGVKTARITVNEAFYLATAGGGQALSLPIGKLEKGYAWDVQIINTSLSQARIPKNQG ESLLDIFQKILYLARPENIREVWVQGEKVHDKNLMSATKGV >gi|307679028|gb|GL456769.1| GENE 218 231402 - 232733 357 443 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 27 438 19 419 447 142 28 2e-32 MSEKKQNNLHLTVGPEDSVSFGQATMLGIQHVLAMDVYVVPVIIASIIGISTAQTSSLIQ ATFIAAGLATIIQSHFCMRLPVAQGPSFIPIGAIAGIYFANNQQGNGWGAVLGASLVGAI VVIILGFTGIFNRLITKFVPPIVGGTIIFVVGLSLMPVALSDNIYHAKGELGQNILLAFI AAGTLIFFALLGSALKKGRIFRVSSVILALLFGSIAAQLLGVLDLSAVSKAAWFSLPQLP LVNFSFQFDWSAIATMLVIYLVLMAETTGTWFAVSHVVAEPLTEEKINRGVIGEGLGCLV SSFIGGTPVTSYSTNAGIISITGVASRKVFVAAGAWFVLFGLSGKLSTLISAIPAPVIGG VFVVVCGIISVSGMKVMSDVTIHEKEMYVIAVPIIMTLALTLLPKEFLETLPQFLQYLFS SPVATASIVAILLQAILPNVQEG >gi|307679028|gb|GL456769.1| GENE 219 232875 - 233852 1232 325 aa, chain + ## HITS:1 COG:jhp0790 KEGG:ns NR:ns ## COG: jhp0790 COG0516 # Protein_GI_number: 15611857 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Helicobacter pylori J99 # 1 325 1 325 325 581 86.0 1e-166 MKVFDYEDVQLIPNKCIVNSRSECDTTVTLGKHSFKMPVVPANMQTIIDETIAETLAENG YFYIMHRFDEEARVPFIKKMQQKGLITSISVGVKEGEYAFVETLAREGLVPDYVTIDIAH GHSNAVINMIQHLKKSLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKT GFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSVRFGATMVMIGSLFAGHEESPG ETKVEDGVVYKEYFGSASEFQKGEKKNVEGKKIWLRHKGKLADTLVEMQQDLQSSISYAG GRDLEAIRKVDYVIVKNSIFNGDTI >gi|307679028|gb|GL456769.1| GENE 220 234014 - 234346 214 110 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|18309686|ref|NP_561620.1| 30S ribosomal protein [Clostridium perfringens str. 13] # 2 105 3 107 110 87 42 8e-16 MIGSDAIRGYNDTFILSILQSGASYGYAISKRIREISKEQYSIKETTLYSAFTRLEKNGY IESFPGEVTHGKKRTYYQITHAGERYLEEKLLEWEVTKDVVEAFVKEMGK >gi|307679028|gb|GL456769.1| GENE 221 234343 - 235371 1023 342 aa, chain + ## HITS:1 COG:no KEGG:EF2427 NR:ns ## KEGG: EF2427 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 342 1 342 342 650 98.0 0 MKIIEEFIDSLFSGVVETSETKQLKADLLANAEDRYEDLLSQGKSENEAIGTIISEFGTI DELMEELNLENKQVDETNDSMNGLPEISVEEGLDYLAVQRKGAIQIGLGVVAIMVGVGLL VGMRGVLSNGLGLVCLFIGVAIGVPLFIVAGNRFVAMDKQLGQRLIPIKLKKEVAQREQS FQRSFIFCMAAGVVFCILGLIPVVVFSSGLHLMMRRSMHQMMGGQYYNGTMGISWLFFLV SVGVFLFIFGGVIKGSFNKLLNETYFYSEHVGHPDFAPQQTKTEEGPVGNPVGAIIASVY WPLVVALYLFISFVLGDWRFSWLIFMFAGIFYNTIQAFLHKH >gi|307679028|gb|GL456769.1| GENE 222 235506 - 236957 1470 483 aa, chain + ## HITS:1 COG:lin2204 KEGG:ns NR:ns ## COG: lin2204 COG1167 # Protein_GI_number: 16801269 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Listeria innocua # 1 458 1 461 466 402 46.0 1e-111 MWQLKKEQNVPIYRSIMEVIVQKIQTGELLPGEKIPSERKLAEYLSVNRSTVVHALDELV DLGWIVRKRGSGTIVNEGKWGVMMTPRTDWHRYLEQNVFKQVHPLVAEIELRAKQNLPTD LDMYTGELPLDLIPSFDFPALNWKQFLKEEAQDELGYLPLRKEIQAITATEYQLHLPSES LLLTSGAQQALFLVLQVLLRQGDSVAVEDPSFFYALPIFQAAGVRLFGVPMTEEGIDLEA LEQTIRQHRIKMVMVNPSFQNPTGTVMPLRKREQLVKVCQTYQVPILEDDVFGQLSFIPK TEIPPLKKLDPDNVLYIGSLSKILGSTTKIGWLSAPASVTKQIAEARKMMDVSLSIFPQM LAKMAIEDPSFSEKITLLNKQVEQRATAVYQVFKSLPEWEVSPVKGGFYLWAHWRQGALK PEDWQVFLREGVLVAPSVAFSEKRGSIRLNCSRISPEEMPLFCERMVRITRQLSENRQTK IEQ >gi|307679028|gb|GL456769.1| GENE 223 237078 - 238802 2336 574 aa, chain + ## HITS:1 COG:SPy1224 KEGG:ns NR:ns ## COG: SPy1224 COG1109 # Protein_GI_number: 15675188 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Streptococcus pyogenes M1 GAS # 1 570 1 568 572 714 61.0 0 MSWEQVYQQWLNEENIPENLKNELKDLNTDPEKCEDAFYAPLEFGTAGMRGILGAGINRM NIFTVRQATEGLARFMDTQDPETKRRGVAIAYDSRHMSPEFAMEAAKTLAKHDIPSFVFE SLRPTPELSFAVRYFKAFAGIMITASHNPAAYNGYKVYGEDGGQMPPADADALTKYVRSI ENPLKIDVLSDEEVAHSGLINIVGEEVDNAYLKEIKTVTINQELINEMGKELKLVYTPLH GTGKMLGEKALKQAGFEKFVLVPEQAVADPDFTTVKSPNPEEHSAFEYAIRLGEKEGADL LIATDPDADRLGAAVRMPNGDYQVLTGNQLGSIMIHYILEAHQQAGTLPQNAAVLKSIVS SELATAIAEKYNTKMFNVLTGFKFIAEKIQQYEEDHSQTFMFGFEESYGYLVKPFVRDKD AIQALVLLAEVAAFYKKQGKTLYDGLQDIFEEFGYFEEKTISVTMSGIEGSGKIKALMAK CREQAPTEFAGIQVAQTEDFKELTRTFADGQTEQLQTPPSDVLKYHLEDGSWIAIRPSGT EPKIKFYLATKATSSSEASEKIAAFEAVVNELTK >gi|307679028|gb|GL456769.1| GENE 224 238909 - 239691 1022 260 aa, chain + ## HITS:1 COG:SP0933 KEGG:ns NR:ns ## COG: SP0933 COG0345 # Protein_GI_number: 15900813 # Func_class: E Amino acid transport and metabolism # Function: Pyrroline-5-carboxylate reductase # Organism: Streptococcus pneumoniae TIGR4 # 1 257 1 256 265 173 39.0 3e-43 MKIGFIGAGSMGGAMIKGLLKAETVKKEHLYVKGGSSGTAEALQKEWGFQLVTDYALFQE CKVIFIATGAKVVLPVLQELAPHFSNESLLISVATGHTIQEAQMALGNKEAKVVHAIPNT PVSVNQGVIGVALAPTIEGQTKELVMELLATLGLVKEIREAQLETFGTVAGCSPAFVDIF MEALGDAAVLEGLPRDLSYEIVAQMIKGTATLALDTKKHPGALKDEVTSPGGSTIRGVVA LEKNGFRYAVMDAVQQANHE >gi|307679028|gb|GL456769.1| GENE 225 239829 - 240116 390 95 aa, chain + ## HITS:1 COG:BS_yozA KEGG:ns NR:ns ## COG: BS_yozA COG0640 # Protein_GI_number: 16078972 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 5 94 17 106 107 86 52.0 1e-17 MKQMEEIKQVSQLYKVLSDPTRLRILLLLKEGEHNVTAISEQLGMEQSAVSHQLKLLRDS RVVKARREGKTIFYTLDDHHVIDILNQTFEHIEHR >gi|307679028|gb|GL456769.1| GENE 226 240168 - 241460 1455 430 aa, chain + ## HITS:1 COG:lin2691 KEGG:ns NR:ns ## COG: lin2691 COG0460 # Protein_GI_number: 16801752 # Func_class: E Amino acid transport and metabolism # Function: Homoserine dehydrogenase # Organism: Listeria innocua # 1 427 1 426 428 482 58.0 1e-136 MKDTLKIGLLGLGTVGTGVLTLLKEHQEKISQVTGMNVVIEKAFVRNLETKQAQAEEYGL SLTTSIDDILEDKEIQIVVELMGTIEPAKTYIMKALEKGKHIVTANKDLLAQHGSELVAL AQKHHCDLYYEASVAGGIPILRTIANSLAADNIQQVLGIVNGTTNYMLTQMVSADKSYEE ALAEAQALGFAEADPTNDVDGIDAAYKMVILSQFAFGMNVSLPQVDIRGIRGLSLDDVAM AKQLGYEIKLIGSAEQNENSISVEVAPMLVNQKHPIASVRNEYNAVFIKSAGVGESMYYG PGAGAKPTATSVVSDLITIAKNIRLATTGHMFNSYQHKTQLTSSENVFGQYYFSLDVPDT PGQFLQLTQLMTKAEVSFDQLVQQKSDGQRARIVAITHQISKAQMQQVVTAIQNTEAFQL LNVMKVIGDE >gi|307679028|gb|GL456769.1| GENE 227 241463 - 242518 1519 351 aa, chain + ## HITS:1 COG:lin2690 KEGG:ns NR:ns ## COG: lin2690 COG0498 # Protein_GI_number: 16801751 # Func_class: E Amino acid transport and metabolism # Function: Threonine synthase # Organism: Listeria innocua # 1 348 1 349 351 535 82.0 1e-152 MYEGLLKQYQAYLPVTEKTPMISLAEGNTPLIPLPNLSKELGIQLYGKYEGLNPTGSFKD RGMVMAVAKAVEEGAKAIVCASTGNTSAAAAAYATRAGIKAYVVIPEGKIALGKLAQAIM YGADIISIPGNFDEALKAVREIAKTEAVALVNSVNPYRLEGQKTAAFEVCEQLGQAPDVL AIPVGNAGNISAYWKGFKEWHEKQGTTLPRMHGFEAEGAAAIVKGQVIEQPETVATAIRI GNPASWQLAEQARDESGGFIDAVTDQEILTAYRKIAAQDGVFIEPGSAASLAGVIQHVKS GKIKAGETVVAVFTGNGLKDPDTAMETEVAISKMSDVEEMRLHLRKGVATL >gi|307679028|gb|GL456769.1| GENE 228 242515 - 243378 937 287 aa, chain + ## HITS:1 COG:lin2689 KEGG:ns NR:ns ## COG: lin2689 COG0083 # Protein_GI_number: 16801750 # Func_class: E Amino acid transport and metabolism # Function: Homoserine kinase # Organism: Listeria innocua # 1 287 1 287 288 336 56.0 4e-92 MKIRVPATSANLGPGFDSCGIALSAYLTINVLGESEFWEIQHTLGEEIPTNEENLLIQTA LKIAPELTPKVIRMVSDIPLARGLGSSSSVIVAGIELANRLAHLNLSPKEKVRLATEMEG HPDNVAPAILGDFVVASHVENQVYHVKHHFPMCDVIAFIPEEPLFTEKSRAVLPEKLAYK EAVAASSIANVMIAAILNGDLPLAGKMMEQDKWHETYRRSLVPHLKEIRRLTQQKGAYGS FLSGAGPTVLILSPEERTNEIVQSLEKLSTKASIQIFNIDQEGVQVF >gi|307679028|gb|GL456769.1| GENE 229 243421 - 244251 749 276 aa, chain - ## HITS:1 COG:BH1373 KEGG:ns NR:ns ## COG: BH1373 COG1806 # Protein_GI_number: 15613936 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 3 257 10 264 270 227 43.0 2e-59 MTIFVISDSAGETASKLAAASMAQYPTVDFTLIRRTFVKDEDKLVQALEDAKKAEAMVLH TIINDHLVAIANQFFNEHQLFHFDILTPPVAEIERLTGVAPMREPGALHHLNENYFKRIE AMEFAVKYDDGKDPRGFLEADVLLLGVSRTSKTPLSLFLANKNLKVANLPLIPEAHLPKQ LFEMDPKKIVGLTNDPNVLNGIRKERMRAYGLPENTSYSDIEKIRRELAFANDLYQKLGC IVIDVASLSIEETASMILNALNLEDHSYYSTETSED >gi|307679028|gb|GL456769.1| GENE 230 244382 - 244816 436 144 aa, chain + ## HITS:1 COG:BS_zur KEGG:ns NR:ns ## COG: BS_zur COG0735 # Protein_GI_number: 16079565 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Bacillus subtilis # 7 141 2 135 145 135 47.0 2e-32 MAPVKTNIEQALETMKASGLKYTKKRELLMSYLIKRNRYVSAREVYEFMNETFKGVSYDT VYRNLHDFERLELLEKTELNGEQKFRFRCCQEVEHHHHFICTVCGKTEEIHMCPMNFFEE QLKGCSIEGHRFEILGRCADCCEK >gi|307679028|gb|GL456769.1| GENE 231 244919 - 245158 400 79 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227519866|ref|ZP_03949915.1| 30S ribosomal protein S21 [Enterococcus faecalis TX0104] # 1 79 1 79 79 158 98 2e-37 MWVFPTNKKNGYFLSSEGGNNMSKTVVRKNESLDDALRRFKRSVSKAGTLQESRKREFYE KPSVKRKKKSEAARKRKKF >gi|307679028|gb|GL456769.1| GENE 232 245184 - 245633 420 149 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 [Lactobacillus johnsonii NCC 533] # 1 146 1 146 147 166 55 1e-39 MSLLTTLNDDIKTAMKAKDKETLAVLRMLKTAIQNDQIKAGRELNGEEELTVLSREMKQR KDSLSEFEKAGRDDLVEKVKVEIAIVEKYMPQQLTEEEIRQLVQEVMTQTGATSPKDFGK VMGAMMPKVKGKADGNQVNAIVKELLQEN >gi|307679028|gb|GL456769.1| GENE 233 245816 - 246790 1223 324 aa, chain + ## HITS:1 COG:SP0948 KEGG:ns NR:ns ## COG: SP0948 COG1702 # Protein_GI_number: 15900827 # Func_class: T Signal transduction mechanisms # Function: Phosphate starvation-inducible protein PhoH, predicted ATPase # Organism: Streptococcus pneumoniae TIGR4 # 5 317 2 314 322 413 65.0 1e-115 MTDNQSKSLELILTDSDDAHMLLGTHDKHIKFLEENTHVTINSRGEVIQLIGESSEVELV ASVLRALQTLIQRGIKVHTPDVVSALKMAKAGNLEAFIAMYEEEIMKDHHGRAIRIKNVG QKKYIDAVKTHDVIFGVGPAGTGKTFLAVVMAVAALKKGEVQKIILTRPAVEAGESLGFL PGDLKEKVDPYLRPVYDALYQIFGMDHTNRLMERGVIEIAPLAYMRGRTLDDAFVILDEA QNTTVAQMKMFLTRLGFSSKMIVNGDTSQIDLPRGVTSGLVNAERTLKDIEKIAFVNFEA SDVVRHPVVAQIIQAYEKEQQKHS >gi|307679028|gb|GL456769.1| GENE 234 246819 - 249017 989 732 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762592|ref|ZP_02169656.1| ribosomal protein S21 [Bacillus selenitireducens MLS10] # 20 730 26 748 750 385 32 1e-105 MKKVLTKLGDRLGKAYLPILLAVFSLLLFMIMFGSVHQKRVEIKEGQLAEKTIRANKNIE NTYETEQRKKLAAEAVTPEYIYQEDTASVQHNRIDKLFKLIDSANEKVDKEYSNKQAKAK KEETIPAPTVEERVASLKSLFESLPQDEVTFYQSFPNVFYQTIFTLTSEQLDKVRSESLM LVDDAMQNHVRESDLDKIRQEANGKIQYLDITSTMQQVIRYIVNQGIVVNDIANEKRTEE LRQKAMNAVQPAMIYQGEIIVREGTQIDAKAVEKLELLGMTSQNTSIFPMVALALAILLQ VEVLIFFTKQVTEPSRQRSFIIFYTGAMLISVILMKFFQIFQTEQLMYIPLFYPAAFAPL ILNHFVNRRSGIIAAIFQVVFALFIFYNSIGTNSLTVILIMYLFSGFLATVVKRKRMSEQ VFPALMWVVVFPVFMAVVFMIFQGMSLTDGKTWTALICASAGTVLSFLATMGLHPYIELL VTDDSMIVLNELSNPNHPLLKQLLEEAPGTYHHSMMVASLSANAVAEIGGRSLLTRVACY YHDIGKIKHANFFVENLPAGAENPHNFLLPEDSKQIIFGHVIDGAKILEEYNMPQMVIDI CRQHHGTTLMKFFYVKAKERNPEIKESDFRYPGPRPQTREAGIVSIADTCEAAVRAMDHP TNEKIQAFVHNVIQDRISDGQLDECGLTMKEIRIIEKSLINGLCSTFHSRIKYPKMKAEA EEMKDEQEKRDD >gi|307679028|gb|GL456769.1| GENE 235 249017 - 249496 671 159 aa, chain + ## HITS:1 COG:lin1502 KEGG:ns NR:ns ## COG: lin1502 COG0319 # Protein_GI_number: 16800570 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Listeria innocua # 1 159 4 161 161 175 64.0 3e-44 MDITFIDETEKVPTEEIKEIENLLQFAAGFLEIAEDTEMSVTFTDNAGIQVINRDYRGKD MPTDVISFALEDEGEDELPIIFDDEELAELPRNLGDLIISTERAAEQAVEYGHTLEREMG FLAVHGFLHLNGYDHMEPEDEKEMFGLQKEILDAYGLKR >gi|307679028|gb|GL456769.1| GENE 236 249480 - 249881 418 133 aa, chain + ## HITS:1 COG:L95012 KEGG:ns NR:ns ## COG: L95012 COG0818 # Protein_GI_number: 15673069 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Diacylglycerol kinase # Organism: Lactococcus lactis # 4 128 25 149 151 124 52.0 6e-29 MALKDEQTGKNKHFINSLEFAWQGIKTVFREERNMRKHVAFGVTAIVFGFLFSLTLAEWL WLLLAVFLVWLAEIINTIFENVVDMFTDFHFHPIGKKVKDMAAGAVLLTAGFAVLVGLIL FVPKILQIIQMWK >gi|307679028|gb|GL456769.1| GENE 237 249895 - 250797 1288 300 aa, chain + ## HITS:1 COG:SP0969 KEGG:ns NR:ns ## COG: SP0969 COG1159 # Protein_GI_number: 15900846 # Func_class: R General function prediction only # Function: GTPase # Organism: Streptococcus pneumoniae TIGR4 # 6 300 4 299 299 424 73.0 1e-119 MTTEHKSGFVAIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGIYTIPEAQIVFI DTPGIHKPKHRLGDFMVESAYNAMREVDATLFMVSADQKRGKGDDFIIERLKNNNSPVYL IINKIDKVHPDDLLSIIEDYSKQMDFKEIIPISATEGNNFEHLMDVLVEQMPEGPQYFPD DQITDHPEYFIVSELIREKVLLLTRDEIPHSVAVVVDSMKRDENDKVHVQATIIVERDSQ KGIIIGKGGKMLKQIGTKARQDIEYLLDDKVYLELWVKVQKDWRDKKIYLQDFGYRKEEY >gi|307679028|gb|GL456769.1| GENE 238 250880 - 251668 786 262 aa, chain + ## HITS:1 COG:L1006 KEGG:ns NR:ns ## COG: L1006 COG1381 # Protein_GI_number: 15672040 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Lactococcus lactis # 1 253 1 251 251 240 45.0 2e-63 MALGETKGIILFTKDFKEKDKLVKIFTESYGKLMFFVKGAHRKNNPLLPAILPFTEAVYI GNFREEGLSFLNSSKEVQPFRNIQQDIFINAYGTYILNLVDAAIEDQHYDPNLFQFTHMA LSALNEQKDPEIITNIFEIQLLERFGVRPEWHHCVACGETQGKFDYSSKYSGVLCEKHWH LDEQRYHADPRAIHFIRLFAQVSYEKVQNIQVKEETKKSIRETIDMLYDEYVGLHLKSKK FIDQMKTWENTLKIPPRKKEEK >gi|307679028|gb|GL456769.1| GENE 239 252314 - 253222 1171 302 aa, chain + ## HITS:1 COG:SP1475 KEGG:ns NR:ns ## COG: SP1475 COG0752 # Protein_GI_number: 15901325 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, alpha subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 302 1 302 305 533 84.0 1e-151 MKNKLTVQEMILTLQKFWSSNGCMLMQAYDTEKGAGTMSPYTFLRAIGPEPWNAAYVEPS RRPADGRYGENPNRLYQHHQFQVVMKPSPENIQELYLESLKLLGIDPLEHDIRFVEDNWE NPSMGCAGLGWEVWLDGMEITQFTYFQQVGGLQCHPVTSEITYGLERLASYIQEVESVYD LEWTQGVKYGEIFVQPEYEHSKYSFEISNQEMLLENFDKFEKEAKRCIEESLVHPAYDYI LKCSHTFNLLDARGAVSVTERAGYLARIRNMARSVAKIFVAEREKLGFPLLNKDQSVSKE AE >gi|307679028|gb|GL456769.1| GENE 240 253224 - 255308 2874 694 aa, chain + ## HITS:1 COG:SP1474 KEGG:ns NR:ns ## COG: SP1474 COG0751 # Protein_GI_number: 15901324 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, beta subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 694 1 678 678 673 53.0 0 MAKDLLLEIGLEEMPAHVVTPSRIQLEEKVIKFLDEHHLDYETVQSFATPRRLAVKVTAI PEKQADVEEEVKGPAKKIALDAEGNWSKAAQGFVRGQGVTTEDIVFKELNGVEYVYVTKF TKGQSAKEVLTKLNDVITSLTFPVTMHWANYDFEYIRPIHWIVALLDDEVIPFNVLDVTT GQTSRGHRFLGDDVTFQHANEYETKLKEQFVVVQPNERKQMIVDQANALAAEKNWQLALD EELLEEVTNLVEYPTAFVGSFDEKYLSVPDEVLVTSMKEHQRYFEVRNDQGLLMPHFIAV RNGDNVHLENVIKGNEKVLIARLEDAEFFYNEDKKLTIEACVEKLKNVTFHEKIGSIYEK MQRVALIAQIIGRKVGLSEDELEDLKRASEIYKFDLVTNMVGEFPELQGIMGEKYALLQG EKPAVATAIREHYLPTSSEGELPETAIGAVLALADKLDSVFSFFSVGMIPTGSNDPYALR RQTYGVIRIIEDKGWTFPLVQLQTEVDEAVNQDVEKYGVLLNEGQAEVVEFVKARLRQLL MTKNVRHDIIDAVVSAEQADLSKLFASANILKSRFEDQDFKPSMEALTRVINLAKKGQEL LGDTEEGIDPSLFENKAEKELYQAVNDLSEAFATRTIAENYEALVNLRPLIDAYFNETMV MVEDEKVKQNRLKQLMQIAKMALSIASLDLLIVK >gi|307679028|gb|GL456769.1| GENE 241 255348 - 255539 274 63 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227553937|ref|ZP_03983984.1| ## NR: gi|227553937|ref|ZP_03983984.1| conserved hypothetical protein [Enterococcus faecalis HH22] conserved hypothetical protein [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis T2] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T3] conserved hypothetical protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis Merz96] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis D6] predicted protein [Enterococcus faecalis AR01/DG] conserved hypothetical protein [Enterococcus faecalis T11] hypothetical Cytosolic Protein [Enterococcus faecalis R712] hypothetical Cytosolic Protein [Enterococcus faecalis S613] conserved hypothetical protein [Enterococcus faecalis PC1.1] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] conserved domain protein [Enterococcus faecalis TX4248] conserved domain protein [Enterococcus faecalis TX0855] conserved domain protein [Enterococcus faecalis TX2134] conserved domain protein [Enterococcus faecalis TX0860] conserved domain protein [Enterococcus faecalis TX0109] conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX0470] conserved domain protein [Enterococcus faecalis TX0635] conserved domain protein [Enterococcus faecalis DAPTO 512] conserved domain protein [Enterococcus faecalis DAPTO 516] conserved domain protein [Enterococcus faecalis TX0102] conserved hypothetical protein [Enterococcus faecalis HH22] conserved hypothetical protein [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis T2] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T3] conserved hypothetical protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis Merz96] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis D6] predicted protein [Enterococcus faecalis ARO1/DG] conserved hypothetical protein [Enterococcus faecalis T11] hypothetical Cytosolic Protein [Enterococcus faecalis R712] hypothetical Cytosolic Protein [Enterococcus faecalis S613] conserved hypothetical protein [Enterococcus faecalis PC1.1] Bacterial RNA polymerase, alpha chain C terminal domain. [Enterococcus sp. 7L76] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX0109] conserved domain protein [Enterococcus faecalis TX0860] conserved domain protein [Enterococcus faecalis TX2134] conserved domain protein [Enterococcus faecalis TX0855] conserved domain protein [Enterococcus faecalis TX4248] conserved domain protein [Enterococcus faecalis DAPTO 512] conserved domain protein [Enterococcus faecalis TX0102] conserved domain protein [Enterococcus faecalis TX0635] conserved domain protein [Enterococcus faecalis DAPTO 516] conserved domain protein [Enterococcus faecalis TX0470] conserved domain protein [Enterococcus faecalis TX2137] conserved domain protein [Enterococcus faecalis TX4000] conserved domain protein [Enterococcus faecalis TX0027] conserved domain protein [Enterococcus faecalis TX4244] conserved domain protein [Enterococcus faecalis TX0031] conserved domain protein [Enterococcus faecalis TX0043] conserved domain protein [Enterococcus faecalis TX0312] conserved domain protein [Enterococcus faecalis TX0645] conserved domain protein [Enterococcus faecalis TX1302] conserved domain protein [Enterococcus faecalis TX1341] conserved domain protein [Enterococcus faecalis TX1342] conserved domain protein [Enterococcus faecalis TX1346] conserved domain protein [Enterococcus faecalis TX0309B] conserved domain protein [Enterococcus faecalis TX0630] conserved domain protein [Enterococcus faecalis TX0309A] hypothetical protein OG1RF_11838 [Enterococcus faecalis OG1RF] hypothetical protein HMPREF9520_02392 [Enterococcus faecalis TX1467] # 1 63 1 63 63 108 100.0 1e-22 MLETTFEQILTQLSKPAVRALTNEKIDSVDELYARGRKALLSLHGFGPKSIRTIEEMTGK ELK >gi|307679028|gb|GL456769.1| GENE 242 255573 - 256505 1177 310 aa, chain - ## HITS:1 COG:SPy0351 KEGG:ns NR:ns ## COG: SPy0351 COG0706 # Protein_GI_number: 15674505 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Streptococcus pyogenes M1 GAS # 4 310 5 307 307 261 46.0 1e-69 MRKLNRWLYGSGLLFLVMFLSGCVKTGADGQPTGEGFVYNFLVLPMSNAITYLVDNFNWN YGWAIIFITIIVRIIILPLGLHQSKKSFIQTEKMQAIKPQVDVAQAKMKQASTREEQMAA QAELQKIYKENNVSMVGGIGCLPLLIQMPIFSSLFFAARYTKGIATASFLGMNLGQPNMI LVALAGLAYLAQGYISMIGIPEEQKKTMKSMLIVSPLMIVFMSFSSPAGVALYWVVGGIF TCIQSAITNILLRPRIKKQVQEELKNNPPKQVVTPIKDVTPKETNKVTQKTNQPKANGNK GRNAGKQKRK >gi|307679028|gb|GL456769.1| GENE 243 256672 - 256947 375 91 aa, chain - ## HITS:1 COG:lin1418 KEGG:ns NR:ns ## COG: lin1418 COG1254 # Protein_GI_number: 16800486 # Func_class: C Energy production and conversion # Function: Acylphosphatases # Organism: Listeria innocua # 6 90 8 92 93 76 47.0 1e-14 MEKLRMNVQGRVQGVGFRYMTKMVADQLGVTGSVKNEDDGSVSITAIAPEDIMETFIKKI KDSPSPAGRVTYVDIQEDPLLEETEQFKVIQ >gi|307679028|gb|GL456769.1| GENE 244 257054 - 257830 206 258 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 26 252 3 240 255 84 27 7e-15 MKEITSTKNNQLKEWKKLHKKKYREELNQYIIEGFHLVEEAVKANADVQWILFNQRGQQE WGTWLAEQETEKLIFVSDEVLNSLSELPTSQGILAIVTLETQQEQSLSFKGGWLLLDNIQ DPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSMQGSHYHLPVLQRELTEVVQAFK KQGLPVFGTELNEAAIAYYEQEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAES LNVAIAAGVLMFYFENNQ >gi|307679028|gb|GL456769.1| GENE 245 257850 - 258287 534 145 aa, chain + ## HITS:1 COG:CAC1468 KEGG:ns NR:ns ## COG: CAC1468 COG0454 # Protein_GI_number: 15894747 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Clostridium acetobutylicum # 9 142 4 140 142 95 36.0 3e-20 MLTIKKTTQLTEKELETIMAIWLQTNLEAHPFVAPTYWQENKAFVRTALPKATLILAEEE DQIIGFLGLMDNYIAGIFIKKAFQGKGIGQKLLQVAKEEQDLLSLAVYRKNQAAYAFYQK QGFVQQKRTIDETGNEECHLVWQAH >gi|307679028|gb|GL456769.1| GENE 246 258471 - 259256 1336 261 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29376895|ref|NP_816049.1| 30S ribosomal protein S2 [Enterococcus faecalis V583] # 1 261 1 261 261 519 100 1e-146 MAVISMKQLLEAGVHFGHQTRRWNPKMKKYIFTERNGIYIIDLQKTVKLVDAAYDYMKNV AEEGGVALFVGTKKQAQEAIKDEAIRAGQYYVNHRWLGGTLTNWDTIQKRIARLKKINAM EEDGTFEVLPKKEVAGLNKERERLEKFLGGIADMPRIPDVMYIVDPRKERIAVQEAHKLN IPIVAMVDTNCDPDEIDVVIPSNDDAIRAVKLITAKMADAFIEGNQGEDQATEELFVEET PEATSIEEIVDVVEGNNESAE >gi|307679028|gb|GL456769.1| GENE 247 259362 - 260243 582 293 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts [Haemophilus influenzae R2866] # 1 287 1 275 283 228 44 2e-58 MADVTAKMVKELRDMTGVGMMDAKKALVKVEGDMEKAVDFLRENGMAKAAKKNDRIAAEG LANVATVGNVAAIVEVNSETDFVSKNEMFQDLVKDIATKVAENKPATMEEAMAIKTEKGT IESDLIEATTVIGEKISFRRFEVVEKADNAAFGAYLHMGGRIAVLTVIDGTTDEEVAKDV AMHIAAINPRYVNESQIPQEELEHEKAVLTEQALNEGKPANIVEKMVVGRLQKFKAEIAL VDQPFVKDPDMTVEKFVASKGGEVKSFVRFEVGEGIEKREDNFADEVMSQMKN >gi|307679028|gb|GL456769.1| GENE 248 260504 - 261226 1013 240 aa, chain + ## HITS:1 COG:lin1350 KEGG:ns NR:ns ## COG: lin1350 COG0528 # Protein_GI_number: 16800418 # Func_class: F Nucleotide transport and metabolism # Function: Uridylate kinase # Organism: Listeria innocua # 1 240 1 241 242 358 76.0 5e-99 MVKPKYQRVVLKLSGEALAGEDGFGIKPPVIKEIVQEIKEVHELGIEMAIVVGGGNIWRG QIGAQMGMERAQADYMGMLATVMNALALQDTLENLGVPTRVQTSIEMRQIAEPYIRRRAE RHLEKGRVVIFAGGTGNPYFSTDTTAALRAAEVDADVILMAKNNVDGVYSADPRVDETAT KFEELTHLDVISKGLQVMDSTASSLSMDNDIPLVVFNLNEAGNIRRAILGENIGTTVRGK >gi|307679028|gb|GL456769.1| GENE 249 261230 - 261787 957 185 aa, chain + ## HITS:1 COG:lin1351 KEGG:ns NR:ns ## COG: lin1351 COG0233 # Protein_GI_number: 16800419 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome recycling factor # Organism: Listeria innocua # 1 185 1 185 185 213 70.0 2e-55 MSKEVLATAKEKMTKAEESLRRELGQIRAGRANASLLDRIQVEYYGAPTPVNQLASINIP EARVLMITPFDKNSIADIEKAIQMSDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKE AENSKVAVRNVRRDAMDELKKAQKNGDITEDELRSFEKDVQKLTDDSIKNIDAITAEKEQ ELLEV >gi|307679028|gb|GL456769.1| GENE 250 262157 - 262927 194 256 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 3 228 1 221 245 79 27 2e-13 MSVLEIKNLHVSIEDKKILKGVDLTINTGEIHAIMGPNGTGKSTLSAAIMGNPNYEVTEG EILFDGVNVLDLEVDERARLGLFLAMQYPSEIPGITNAEFMRAAINAKRDEDNKMSVMQF LKKLDSKMELLNMPEEMAERYLNEGFSGGEKKRNEILQLLMLEPTFAILDEIDSGLDIDA LKVVSKGVNEMRGENFGALIITHYQRLLNYITPDVVHIMMEGRVVKTGGADLAKRLETEG YAGISQELGIDYKEEA >gi|307679028|gb|GL456769.1| GENE 251 262942 - 264228 1621 428 aa, chain + ## HITS:1 COG:SPy0287 KEGG:ns NR:ns ## COG: SPy0287 COG0719 # Protein_GI_number: 15674461 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Streptococcus pyogenes M1 GAS # 11 426 4 417 420 491 59.0 1e-138 MKKVNLMDYLDEVTAFSLEHEEPAWMTELRTTALRNADESELPHIDRVKFHRWPLLNVHM ESYVPSEGNVASFDQMKDNPLIVQQGSFHAFEQLPASLAEQGVIFTDIFTALQEHPELVK EYYMTKAVLPEEDKLTAAHAAFMNSGVFLYVPKNVVIEEPIESLFIQDSDSNQPFFKHVL IVADNHSEFSYLERFQSTGHHAEKASGNIVVEVIAKDGAKVKYSAVDQLGQTVTTYMNRR GYIMRDASVDWALGVMNDGDVVADFDSDLVGEGAHSEVKVVAISAGKQTQGIDTRVTNKA PHSIGHILQHGVIRERGTLTFNGIGHILKGAKGADAQQESRVLMLSDKARGDANPILLID ENEVTAGHAASVGRVDPEEMYYLMSRGLRKEEAERLVIRGFLGSVITAIPVKEVQNEFVE VIEGKLNA >gi|307679028|gb|GL456769.1| GENE 252 264225 - 265460 1446 411 aa, chain + ## HITS:1 COG:SP0869 KEGG:ns NR:ns ## COG: SP0869 COG0520 # Protein_GI_number: 15900752 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Streptococcus pneumoniae TIGR4 # 1 411 1 408 408 578 68.0 1e-165 MMDAATIRQSFPILFQEVNDEPLVYLDNAATTQKPTAVLDVLRHYYETDNANVHRGVHTL AERATKDYEASREKVRQFIHAKETAEVLFTRGTTTSLNWIAKSYGDLAVTAGDEIVISYM EHHSNIIPWQQLAQRTGAILKYIDVTEDGFLDMASARQQITEKTKIVSIAHVSNVLGVIN PIEELTQLAHQNGAVMVVDGAQAVPHMPVDVQAIDADFYAFSGHKMCGPTGIGVLYGKRH LLEQMEPVEFDGEMIDFVHLQESTWKELPWKFEAGTPNIAGAIALGAAIDYLTEIGLEAI HQHEAALVHYVLPKLQAIEGLTIYGPQNPKDHTGVIAFNIDGLHPHDVATALDMEGVAVR AGHHCAQPLLNYLSVPATARASFYLYNTKEDADRLVEAIKATKEFFQHGTF >gi|307679028|gb|GL456769.1| GENE 253 265447 - 265914 690 155 aa, chain + ## HITS:1 COG:SPy0289 KEGG:ns NR:ns ## COG: SPy0289 COG0822 # Protein_GI_number: 15674463 # Func_class: C Energy production and conversion # Function: NifU homolog involved in Fe-S cluster formation # Organism: Streptococcus pyogenes M1 GAS # 1 147 1 146 159 164 57.0 7e-41 MALSKLDNLYRQVILDHSSHPHHHGTLDASSQTIELNNPTCGDVIELDVAIEDGVIKDIA FQGSGCSISTASASMMTDAVLGKTIAEATALAEDFSQLVQGNEVAEDEKLGDAAMLSGVA KFPARIKCATLAWKALEQAVANNGQGEAGHLHCEK >gi|307679028|gb|GL456769.1| GENE 254 265933 - 267327 1559 464 aa, chain + ## HITS:1 COG:SP0871 KEGG:ns NR:ns ## COG: SP0871 COG0719 # Protein_GI_number: 15900754 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Streptococcus pneumoniae TIGR4 # 6 464 12 470 470 802 87.0 0 MSTVPELEEYKFGFHDDVEPVFSTGDGLTEDVVREISRVKGEPEWMLDFRLKSLEQFNKM PMQEWGPDLSDIDFSKIKYYQKPSDKPARDWDDVPDKIKETFEKIGIPEAERAYLAGASA QYESEVVYHNMKEEFEKLGIIFTDTDSALKEYPDLFKEYFSKLVPPTDNKLAALNSAVWS GGTFIYVPKGVRVDVPLQTYFRINAENTGQFERTLIIVDEGASVHYVEGCTAPTYSSNSL HAAIVEIFTRKDAYCRYTTIQNWSDNVYNLVTKRAKAYEGATVEWIDGNLGAKTTMKYPS VYLDGKGARGTMLSIAFAGANQIQDTGAKMIHNAPNTSSSIVSKSIAKDGGEVNYRGQVT FGKDSAGSISHIECDTIIMDEKSKSDTIPFNEIHNSQVSLEHEAKVSKISEEQLYYLMSR GLSEAEATEMIVMGFVEPFTKELPMEYAVELNRLISYEMEGSVG >gi|307679028|gb|GL456769.1| GENE 255 267462 - 267614 74 50 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315155325|gb|EFT99341.1| ## NR: gi|315155325|gb|EFT99341.1| hypothetical protein HMPREF9503_01825 [Enterococcus faecalis TX0043] # 1 50 1 50 50 90 100.0 5e-17 MHDESVFGIKIRWISFMNGIQKVFIQQRLVLTQCCRKVICPQALFRLNKF >gi|307679028|gb|GL456769.1| GENE 256 268770 - 269606 350 278 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|255972142|ref|ZP_05422728.1| ## NR: gi|255972142|ref|ZP_05422728.1| predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis X98] hypothetical protein HMPREF9504_02526 [Enterococcus faecalis TX0102] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis X98] hypothetical protein HMPREF9504_02526 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9502_02513 [Enterococcus faecalis TX0031] hypothetical protein HMPREF9503_01822 [Enterococcus faecalis TX0043] hypothetical protein HMPREF9508_01132 [Enterococcus faecalis TX0312] # 1 278 1 278 278 504 100.0 1e-141 MSNDNKSWEDLNVRNATLVCGITDSELKEILSIFDILYPLQQIRSVYEITEEINTELLEF LTYDNLKECLVNNQKSTHEVLRTANKLILNYCTSIKLLVEKVEYFSKCNAVQAQKFRTLF SNIYDKELTYRFLMRLRNYIIHNEMPFSICRIGSNKTNIYIDRRELLKWKKWNTVRKDIE EMADEINLYPFISTMRSLMYTIYINILAYYADGLFESYLKYGELLKKYKSEDLLFSKKTF DEISSEGNEGNIIALPIGKLTDFIKELEKVPNIEISYK >gi|307679028|gb|GL456769.1| GENE 257 269665 - 270735 768 356 aa, chain + ## HITS:1 COG:no KEGG:Sph21_4937 NR:ns ## KEGG: Sph21_4937 # Name: not_defined # Def: hypothetical protein # Organism: Sphingobacterium_21 # Pathway: not_defined # 2 262 146 401 500 199 43.0 2e-49 MDLINYEVLSIKKRKFKDCRADDDFFVSLKNDYKGFQEWFVKKADKEVYTHSDIEGNIQG LLYLKEETEEEDYSEMETPFEPRRRLKIGTFKISENGYYMGERFFKVIFENAIKNDFKEI YVTIFPHHELLISYFIKFGFKQETKISETGELVFTRKINVYEKNDYEGYPILNTVGKNYY LLPIKPEYHTRLLPDAILNTEDNSNYTNNNKAGNALKKVYFGKNLWAHQPRNGDVIFFYR TRDHSNASPAHYQSVITSIGVVSGYGDTNQLRSIELEKLLNRCVLDEKEMAQIRNPMNRY KFLEFVYFGKLDYRAVNLGYMRENNIEAPRGIDLIPPSFAFSIIEKSRYSEGIIVK >gi|307679028|gb|GL456769.1| GENE 258 270763 - 270846 86 27 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSTILLPIHPKFVDKIMTGEKNLSLEE >gi|307679028|gb|GL456769.1| GENE 259 271143 - 271655 386 170 aa, chain + ## HITS:1 COG:no KEGG:PSEEN4664 NR:ns ## KEGG: PSEEN4664 # Name: not_defined # Def: hypothetical protein # Organism: P.entomophila # Pathway: not_defined # 6 147 11 154 192 80 33.0 2e-14 MSLNRIFVCGVHGVGKSTFIKNYEPFHNYAKYTCSDLIKKYSGLVFKDKQIDNIENNQEM LLKATDYFVNEELVLFDGHITLFNRSRNMEFVDSNILKSMNIKHFLFLKASPEIIYERLV ERDKYTWITPELIEEAQDKEEAKAIEYSNKLAAKYEIFLWDESREIWEYK >gi|307679028|gb|GL456769.1| GENE 260 272375 - 273643 1532 422 aa, chain + ## HITS:1 COG:SPy1963 KEGG:ns NR:ns ## COG: SPy1963 COG0750 # Protein_GI_number: 15675761 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane-associated Zn-dependent proteases 1 # Organism: Streptococcus pyogenes M1 GAS # 14 422 14 419 419 414 52.0 1e-115 MKTIITFIIVFGILVLVHEFGHFYFAKRAGILVREFAIGMGPKIFAHRGKDGTTYTIRLL PIGGYVRMAGMGEDMTEITPGMPLSVELNAVGNVVKINTSKKVQLPHSIPMEVVDFDLEK ELFIKGYVNGNEEEETVYKVDHDATIIESDGTEVRIAPLDVQFQSAKLSQRILTNFAGPM NNFILGFILFTLAVFLQGGVTDLNTNQIGQVIPNGPAAEAGLKENDKVLSINNQKIKKYE DFTTIVQKNPEKPLTFVVERNGKEEQLTVTPEKQKVEKQTIGKVGVYPYMKTDLPSKLMG GIQDTLNSTTQIFKALGSLFTGFSLNKLGGPVMMFKLSQEASNAGVTTVVFLMAMLSMNL GIINLLPIPALDGGKIVLNIIEGVRGKPISPEKEGIITLIGFGFVMVLMVLVTWNDIQRF FF >gi|307679028|gb|GL456769.1| GENE 261 273715 - 275433 2359 572 aa, chain + ## HITS:1 COG:lin1356 KEGG:ns NR:ns ## COG: lin1356 COG0442 # Protein_GI_number: 16800424 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Prolyl-tRNA synthetase # Organism: Listeria innocua # 1 564 1 564 568 727 62.0 0 MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREE FEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRD EINSYKRLPLNLYQIQTKYRDEKRPRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKA YSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTICYSTESDYAANLEMATSLY TPKKSHETQLDLEKIATPEVGTIAEVANFFEVEPQRIIKSVLFIADEEPVMVLVRGDHDV NDVKLKNFLGADFLDEATEEDARRVLGAGFGSIGPVNVSEDVKIYADLAVQDLANAIVGA NEDGYHLTNVNPDRDFQPISYEDLRFVQEGDPSPDGNGVLAFTKGIEIGHIFKLGTRYSD AMGATVLDENGREKSVIMGCYGIGVSRLLSAIVEQNADERGINWPTGIAPFDLHVVQMNV KDEYQTKLSQEVEAMMTEAGYEVLVDDRNERAGVKFADADLIGCPIRITVGKKAVDGVVE VKIKRTGEMLEVRKEELESTLSILMNTTSEAE >gi|307679028|gb|GL456769.1| GENE 262 275949 - 276494 718 181 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229549444|ref|ZP_04438169.1| ## NR: gi|229549444|ref|ZP_04438169.1| conserved hypothetical protein [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] conserved domain protein [Enterococcus faecalis TX0102] conserved hypothetical protein [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] conserved domain protein [Enterococcus faecalis TX0102] conserved domain protein [Enterococcus faecalis TX0031] conserved domain protein [Enterococcus faecalis TX0312] # 1 181 1 181 181 294 100.0 2e-78 MEKGKWWLIGLATIVLIILGIGGKQYMDKKAIEKDYQQGIDLIQKYVSNYLVENYEGIEK IEWQGVGVEWRNAKGYGPSLLGNYVDSDVRIYVSEDNYFTMSFTLNYNTEYDDKLEKYIQ LDYLRPQKIDSILVLEVENATKGLNIGDKLEISESKKIKKSSEGSSNAKVISNLEIHELV Y >gi|307679028|gb|GL456769.1| GENE 263 276508 - 277821 1276 437 aa, chain + ## HITS:1 COG:no KEGG:SSA_1756 NR:ns ## KEGG: SSA_1756 # Name: not_defined # Def: hypothetical protein # Organism: S.sanguinis # Pathway: not_defined # 13 436 19 504 504 108 25.0 4e-22 MSDEMTTEVLAKSIDSAKKIVQNRENGNKISIQGLEEDYYLINKAASTQSSQLNAMAIAP LDDQGKPDYNNVAVVYAGTNSFGDEGKKGFETAGTAFVGGLSEEYQEAEKFLKQTQQKIA SQNGTITDVAGFSQSGGYMMKMAGKYGQEMGFRTTSFDDWGRNQFERLTASEKQWLQENP EFLIRYQNDSWAALSGRDSKYGTIFSISGVGEHNTLANYFDGDDLDLDRLAKDGIFAPNM TLEQVKLAAKVWAKKNGDWDPTTNNEAEAKKRVQEYLELYGEFAQTNANLEKLKPSTDKA IRSLHTKIASASGGQKIKLRADLALQVANQARTIGEEAEKLLKQSQQDTEQALAEISKEI LTSANEIRQYLSYSEVQAMIAPYEKSRLWDEAQASHNRKQVQQYNQKLMTFSEKLTTAAK NIQEYDRQAGNQLFAQK >gi|307679028|gb|GL456769.1| GENE 264 277835 - 278125 375 96 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315146011|gb|EFT90027.1| ## NR: gi|315146011|gb|EFT90027.1| conserved hypothetical protein [Enterococcus faecalis TX2141] # 1 96 1 96 96 119 91.0 8e-26 MDELERELQLELERVQKIQERQAIQAVITAKQTRIATIKQTSTHTNKKLSELMSKQSKTA LPSSLKGAFQGQVADAASHYLKTIPDANLKTPAKGG >gi|307679028|gb|GL456769.1| GENE 265 278129 - 278464 275 111 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315032874|gb|EFT44806.1| ## NR: gi|315032874|gb|EFT44806.1| hypothetical protein HMPREF9500_01227 [Enterococcus faecalis TX0017] # 1 111 1 111 111 135 98.0 1e-30 MTPEEKRRSYQMIEDNYYQEKRRINQQQQHVSAEIQRFRQQTNQLVDKVAYFTRNDTWDK RMFHHQIATSLDEVKRTENRFVSILEETEQAMRKNYRKEIEKLEEMARMDL >gi|307679028|gb|GL456769.1| GENE 266 278708 - 283063 5125 1451 aa, chain + ## HITS:1 COG:lin1357 KEGG:ns NR:ns ## COG: lin1357 COG2176 # Protein_GI_number: 16800425 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit (gram-positive type) # Organism: Listeria innocua # 3 1448 6 1444 1444 1832 61.0 0 MTEKARDLFDKLMTQIQLDDTAKEHPLIQNGRIDKVIVHQQSRLWEFHLSFDELMPVMLY QTFMQQLELAFQQIAQVSVQITTNQTTFTEEQLTDYWQLALLNSQCNTPLVQKVLKTQTP QFEDRKIILPVDNEAVIPYLKQQYLPIIEELYFSYGFPKFHIEPKMDQQQAAEVLKKFEE QKLEQAAAFQQQAAESLVKHEQMKKEKQQQAPAFDGPIRLGRNIPNDEPIMPMGNILEEE RRITIEGFIFDKEVRELRSKRKILILKITDYTSSFVVKKFSNGEKDEQVFDAIQPQSWIR VRGSVQEDTFMRDLVMNAQDLMEVAHAPRKDYAPEGEKRVELHMHSNMSTMDATNKVGDL VAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILYGVEANIVDDGVPIAYNEEHIE LTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVIETFEQFIDPGHPLSQTTINLTGI TDEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLE LSRFLYPHFKSHRLNTLSKKFGVNLEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHDD LNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLISMSNVDYFFRVPRIPRSQLSKLRE GLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEVMPKPVYAPLIEQELVKNEADLEE IISNLVKIGDELGKLVVATGNVHYLNEEDAIYRKILVGSMGGANPLNRHSLPKVHFRTTD EMLTEFQFLGQDVAKRIVVENPNKVADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRAR ELYGDPLPEIVEKRLEKELNSINGNGFSVIYLISQKLVHKSNEDGYLVGSRGSVGSSFVA TMTGITEVNPLAPHYYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFET FLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGYER DHNLHLRGAEIDRLAKGSTGVKRTTGQHPGGIIVIPDYMDVYDFTPIQYPADDQEAEWKT THFDFHSIHDNILKLDILGHDDPTVIRMLQDLSGIEPKTIPTDDPEVMRIFEGPDVLGVD AEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHGTDVWLGNAEELIRRG EANLAEVIGCRDDIMVYLIHAGLDSGMAFKIMETVRKGQWNKIPDELRDTYLNAMKENNV PDWYIDSCSKIKYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQ GKEAVKARMKEITDKGMDASTKEKNLLTVLELCNEMLERGYKFGMIDLYKSDAENFVIEG DTLIAPFRAVPSLGLNVAKAIVAAREEQPFLSKEDLATRGKVSKTLIEYMNENGVLKDLP DENQLSLFDML >gi|307679028|gb|GL456769.1| GENE 267 283275 - 284732 1589 485 aa, chain + ## HITS:1 COG:L119780 KEGG:ns NR:ns ## COG: L119780 COG0531 # Protein_GI_number: 15673092 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Lactococcus lactis # 1 477 1 477 488 682 76.0 0 MDKKQLRWFTVGLIAFNMVWGLGNVVNNYAQQGISVVTSWLLILVLYFIPYALIVGQLGS TFKDSNGGVSSWVQNTSTKRLAYYAAWTYWVVHIPYLAQKPQAILIALGWAVQGNGNLVN TMPIVTVSFISLIIFLVFLLLSTKGLTTLKVIGGLAGTAMFVMSILFILLAVGAPFINST VEFATPNMSQVSTYIPKFDFSYFTTVSMLVFAVGGAEKISPYVNATKNPAKEFPKGMIFL AAMVGLSAVLGSFAMGMLFSSDNIPKDLMANGAYSAFQKLGAYYGVGNLLMIVYALTNTV GQVAALAFSIDAPLKILLAEADPEFVPSWLRKRTKKGTLINGYLLTGILVSIIIALPMFG LKDMNEVVKWLTNLNSVVMPMRYLWVFFAYMLLNKAYKQFNSEYKFVKNPKIGFVFGLWC FLFTAFACILGMVPKFEYASDPQGWLFQLASNIVTPIVLILLGMILPAIARREKKDTILP IDSAE >gi|307679028|gb|GL456769.1| GENE 268 284951 - 286327 1139 458 aa, chain + ## HITS:1 COG:no KEGG:EF2376 NR:ns ## KEGG: EF2376 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 458 1 437 437 699 94.0 0 MTKTLETQPEEKTVFLCKETNPDFLGREIYADNVETPYNFYLIRKLYLAKEYQNLAEGEQ FFEALCESWDESEQFEELIVKKIYVYVETELMYYTVYFGSFEPTTRDLRSALKQWMYEIP TTKNKKTVRMNETNVQVVPQENQLTELAGEIAVLREMLTLLKENLASLNEAVNQTRNPVI SRQIKTIHLKRASPVIAAEQASLKVSEDTNLEQPDVNLSPDNLENQEGETTVATSEAVLP VNKLVLEEPAKEPVLSEPAPIKEALPEKKQENQQSTAAKPLFTFPQETEKSSLNSVNKSA EKEEEQKPEKEAVSMESEKENSSSRTIPADFQRQLDELEEEIYRRFMSRQLEDTDGNQAV PKITIEKRQLEAQMFEAKAFSQSFKQVQKKKAGDVRICNQLSCMKLEKGLDKFLDEVTEY VEKRTLFNKKVRCPLPVIRELEGYGQLNQYMQKILDCY >gi|307679028|gb|GL456769.1| GENE 269 286526 - 289297 2596 923 aa, chain + ## HITS:1 COG:BH1691_2 KEGG:ns NR:ns ## COG: BH1691_2 COG1199 # Protein_GI_number: 15614254 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Bacillus halodurans # 255 921 36 716 716 309 30.0 1e-83 MKDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIANFATDVNPNQVVPKQIQSLTG ISNTQVQKAPYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTV ELAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK IAELSQQTARETSTFIQQTYEQMKKQVTPLNPAYQVVSGIALRKKEVPLFEETFYQTSTY PKTKKAKEKLFGERFAYRAEQSRMMNLVYDHFTEGTTKDLFIEAATGTGKTLGYLLPMSY LATPEKPVIISTVSIVLQNQLVEKDLPLANQICQGKLRGIVIKSHRHYLDLQRFKATLNQ PTPQKQYALYQMGVLVWLLETETGDLDELQLTNLNHLFWKEVTHRGLDFLSKKDELYEVD FLRHLYKKVAQSNVLIVNHAFLAQESLRKQPLLPESPWLIIDEAHHLPDIASRMASERVN SVILKKQVTHFIEKEQLFVALQQIFQQFSEEQRFVKIYQQGLLDFVDEWQDFLFELHRLF SKTQKRIDHQELLLTKERIDYLSAAGEKHSQTLQLLLQELLTIQSKLQQTIMSQLETFSL ADRIVFVRLFQFFDEIERIHHCFTIYLDDWRPRWVKEYLPQNEDHGLIEIHDLEASLLPE TKWYPRYERIIYTSGTLKFGNNKKYLPQRLGLTEVTFKTLPTPYNYAENARVYVPEEAVA IQNASSYEMGQYISDTIEKLMAQEERSMLVLFTSHELLSTVYHQVQPRLLEKGQEVLAQG ISGSREKILKRFSNGKPNVLLGADSFWEGVDLPGTALQLLIVTRLPFENPKRPLVQAKYA YLEAEGIQPFAQEAVPKAALRLRQALGRLIRSEEDRGALLILDRRLVTAKYGKRLIKAFP KGLSVKEAPMPEILEELKEFLNK >gi|307679028|gb|GL456769.1| GENE 270 289385 - 289891 569 168 aa, chain + ## HITS:1 COG:lin2012 KEGG:ns NR:ns ## COG: lin2012 COG5353 # Protein_GI_number: 16801078 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 32 160 35 165 173 75 35.0 6e-14 MEELEEKKEKKRITVLLTLLAILLAILVTIIIFFVRTNQPMAQAKKEATAIAKTSANLET VDKFYWFTRKNTYFTLTGKNDKGTEIVVIVPKSGEKVTVLNQKDGQTEQQITDIVAKAHP DESVMKATLGLYDKRPTWEVVTENDQGVLTYYLMSFDKGEEINVVKDI >gi|307679028|gb|GL456769.1| GENE 271 289930 - 291129 1295 399 aa, chain + ## HITS:1 COG:SP1544 KEGG:ns NR:ns ## COG: SP1544 COG0436 # Protein_GI_number: 15901387 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 390 1 390 395 523 66.0 1e-148 MNVSNRAQQLTPSVTLAAAAKAKALKAKGVDVLSLTVGEPDFVTPKNIQKAAIASIEDGI ASYYTPSGGIPELKQAIVSYVEREYQLRYQPKQVIVTDGAKYALYLLFQAILNVGDEVII PVPYWVSYGEQVKLAEGKPVFVSSTQEQSFKVSVAQLEAVRTDKTKAIILNSPSNPTGVI YTEEELRQIGEWAVAHNILIIADDIYGRLVYNGHRFTPIATISEAIRQQTIIINGVSKTY AMTGWRIGFAVGDEKIIQAMTQLASQSTSNPVAVSQYAAIEALTGEQSTVEDMRQAFEKR LNHIYPKVAALPGVSLIKPEGAFYLFPNVKKTLEICGYDNVTNWVEDLLQEAHVALVTGE GFGAPEHVRMSYATDLMTLEKAIERMNDFIEKKRIQHNA >gi|307679028|gb|GL456769.1| GENE 272 291164 - 292498 1585 444 aa, chain + ## HITS:1 COG:L0345 KEGG:ns NR:ns ## COG: L0345 COG0017 # Protein_GI_number: 15673810 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl/asparaginyl-tRNA synthetases # Organism: Lactococcus lactis # 4 444 5 447 447 665 71.0 0 MEQIQIIDSNKHVGETVKIGAWIANKRSSGKIAFLQLRDGTAFFQGVVFKPNFIEAFGEE AGTEKFQQIKHLSQETAVMVTGVIKEDSRSKFGYEMDITDLEVVGASEDYPITPKEHGTD FLMDHRHLWLRSSKQHAIMLVRNEIIRATYEFFNEQGFIKIDSPILTGSAPEGTTELFET DYFGQPAFLSQTGQLYAEAGAMAFGKVFTFGPTFRAEKSKTRRHLTEFWMIEPEMAYTTH EESLDIQEAYVKHLIKSVLKNQQYPLDVLERDTALLEKYVSEPFKRITYDDAIELLQKEE ANNDYDHIEWGEDFGSPHETFISNYYGVPTFILNYPKAIKAFYMKPHPTREDVVICADLI APEGYGEIIGGSERATDYDYLKEKVAEFGLSEEEYSWYLDLRKYGSVPHSGFGLGLERAV TFITGNEHIREAIPFPRMLNRIYP >gi|307679028|gb|GL456769.1| GENE 273 292545 - 293504 1040 319 aa, chain - ## HITS:1 COG:CAC3400 KEGG:ns NR:ns ## COG: CAC3400 COG0673 # Protein_GI_number: 15896641 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Clostridium acetobutylicum # 7 317 5 315 322 321 50.0 1e-87 MTKKLYQWGIVGLGGIAHEFASTFKQETSQLAAVASRTLSKAEQFAADYSIPKAYGSYEE LLADETIDVVYIAVPNKQHAEHILKALQAGKHVLCEKAITMNAAELKQALAVAEKNDLIL AEAMTIFNMPLYDELRRLMDAGKFGQLKMIQAPFGSYKEPDPKNRFFNPDLAGGALLDIG TYAVSFARWFLSSQPDVLASSMVPFSTGVDEQSVTLLRNKENELATISLTFQAKMPKQGI VAFEDAYITITDYPRADEAIVHYNDGTVETIVSGYSAEAMNYEIYNMVEAIKGTQPNRSL FFTTEVIDILDQMQKLWQN >gi|307679028|gb|GL456769.1| GENE 274 293677 - 294195 700 172 aa, chain + ## HITS:1 COG:no KEGG:EF2369 NR:ns ## KEGG: EF2369 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 172 1 172 172 313 100.0 1e-84 MHQVYVDIIVDAIIEQYQTEENFYSAYQIQAADWQAWKEGQFGLDNEVMQKIKNLFTDYE WMLTQKILRQTILFPEKRNLAVSEYKRLKTTIAKKWLQSDLGVVELIPNNKQEQEIAAGY IDLKVTLAYGEWGFDDIITFRLPATIQRQLEGSKVELLDWVNENLMDTYVGE >gi|307679028|gb|GL456769.1| GENE 275 294216 - 294434 219 72 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKYTIAGILSVIIMFGAVIFVFFGKKPVEESVHTSTETTVKSSTKISESSTVSSTATTES STEITSVSSDES >gi|307679028|gb|GL456769.1| GENE 276 294534 - 295175 840 213 aa, chain + ## HITS:1 COG:L2183 KEGG:ns NR:ns ## COG: L2183 COG1705 # Protein_GI_number: 15673347 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Lactococcus lactis # 12 213 7 205 209 172 45.0 4e-43 MKWGINEVSNYQKKRKKQLNLPKLFLGVVVVGLAFVFSLSVLSDSDKGQSESVNRQNENI SKEEFVAEITPYARELQESYGVLPSIIMGQAVLESNFGQSQLASKYNNLFGIKAYGNQPK VNLETKEYVNEVWITIQGDFRVYDNWEESMRDHTKLFVDGVDWDPNLYEKVLLAKNYKEA AQALQDAGYATDPTYADKIIHVIEEYNLNKYDR >gi|307679028|gb|GL456769.1| GENE 277 295195 - 295881 1071 228 aa, chain + ## HITS:1 COG:no KEGG:EF2366 NR:ns ## KEGG: EF2366 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 228 1 228 228 405 100.0 1e-111 MSEKWIPEIMTPLKQDIVKMPEIIRQASGIKIFGRKIKSIIFTTDIAIIRNTDAQAVIAV YPFTPHPAITKGIIEAADIPVFSGVGGGLTQGMRSAYMSLFAEAQGSMGVVLNGPTPIET IKMVDEAIDIPIISTVTSIHTPIDEKLAAGVDMINISAGKDTAATVRYFRGKYPELPIIA TGGPTESSIHETIIAGANAITYTPPSNGELFSKKMKKYREQEKATDEE >gi|307679028|gb|GL456769.1| GENE 278 296280 - 296861 845 193 aa, chain + ## HITS:1 COG:SPy1136 KEGG:ns NR:ns ## COG: SPy1136 COG0503 # Protein_GI_number: 15675113 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Streptococcus pyogenes M1 GAS # 1 193 1 193 193 242 68.0 3e-64 MKELVERIKNDGRVLGEGVLKVDSFITHQVDPELMEAMGNRFAEVFAEAGITKVITIEAS GIAPALYAAQKLGVPMIFARKAKSLTMDEELLTASVYSFTKQVTSQISISRKFLSDADKV LIIDDFLANGQAAKGLVELCQQAGAKVEGIGIVIEKSFQDGRQLLEDMGLNVVSLARIAS LSEGTVTFLEEDA >gi|307679028|gb|GL456769.1| GENE 279 296864 - 298183 432 439 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 18 438 15 428 447 171 27 4e-41 METKQLNTPQQTETPNGKAAVLGLQHLLAMYAGAVAVPLLIGTGLNFDSQQMTYLISIDI FMCGVATLLQLTVNKFFGIGLPVVLGCAIQAVAPLIMIGTNKGVGAIYGSIIASGIFVVL IAGFFSKIKRLFPPLVTGTVITVIGLTLIPVAVEKMGGGLATDKSFGDPKNLLLAFVTIA LIIVVQVWGRGFIKSIAVLIGLVGGTILAAFLGLVDLSPVGQATWFHFPQPFYFGKPTFD LSSIVLMIIISIVSMVESTGVYFALGDITGKKIGEDDLRRGYHAEGLAVILGGIFNTFPY TGFSQNVGLVQLSGIKTRRPIYFSAFFLIILGLLPKIGAMAQIIPEPVLGGGMLVMFGMV AVQGMRMLSKVDYSNDKNLLIIAISIGFGLGFNIMPTLFNKVPETVSMFTGNGIVMSSIT AIILNLLFNGLKETSESNE >gi|307679028|gb|GL456769.1| GENE 280 298511 - 299626 1297 371 aa, chain + ## HITS:1 COG:lin1886 KEGG:ns NR:ns ## COG: lin1886 COG0026 # Protein_GI_number: 16800952 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) # Organism: Listeria innocua # 20 370 19 373 374 357 48.0 2e-98 MNLDKPLLPGQVIGIIGGGHLAKMMALSAREMGFRVGVLDPQIDCPAAQVADWQLLGAYN DPEALEKLAKRAQVITYEFEHADVDALTAIQHLANIPQGTDILAITQDRLMEKSFLEDNN IVIAPYATIVSPTDIQEAIDGIGYPCILKNTRGEGRYVLHSTSDLAPSMNLLREGTCVLE AWIPYEKELSVLISGNGRGEFATFPVVETIKKERKLHETIAPARIDDEVSGELQRIAKVI AKAVGLVGTLSIEMFYTETGGIYVNKILPRPEDAGNFSIDACSFSQYDTHIRGLCNWPMP TIQLLSEAVTVNVLGNEAYETMDIINEHPDWHFHYYGHSEAKAQRAMGHITILTKEIDET LEEIKETKIWS >gi|307679028|gb|GL456769.1| GENE 281 299669 - 300964 1751 431 aa, chain + ## HITS:1 COG:SPy0036 KEGG:ns NR:ns ## COG: SPy0036 COG0015 # Protein_GI_number: 15674278 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Streptococcus pyogenes M1 GAS # 1 430 1 430 430 715 81.0 0 MIDRYTRPEMGAIWTDENRYKAWLEVEILADEAWAELGEIPKEDVQKIRENASFDVARIL EIEAETRHDVVAFTRAVSETLGEERKWVHYGLTSTDVVDTAYGYLLKQANDILRKDLQTF TEIVGAKAKEYKHTVMMGRTHGVHAEPTTFGLKLALWYSEMKRNIERFEHAAKGVEAGKI SGAVGTFANISPFVEEYVCEHLGIRAQEISTQVLPRDLHAEYVSAMALIATSIEKFATEI RGLQKSETREVEEFFAKGQKGSSAMPHKRNPIGSENMTGLARVIRGHVITAFENVSLWHE RDISHSSAERIIIPDTTILLNYMLNRFGNIVKNLTVFPENMKRNMDATYGLIYSQRVLLK LIDHGMTREEAYDLVQPKTAYAWDHQTAFRPLLDADEKITSVLSKEELDDAFDYHYHLKN VDTIFERVGLG >gi|307679028|gb|GL456769.1| GENE 282 301148 - 301519 421 123 aa, chain + ## HITS:1 COG:SA0890 KEGG:ns NR:ns ## COG: SA0890 COG2259 # Protein_GI_number: 15926624 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 7 117 4 115 118 72 41.0 1e-13 MDKQQRGIQVIRIWLGVTMLIHGVMKVTSLEDTLAFFASIGLPSLFIYGVAAIELIGGLF MIIGFLIPLVSVGFIAVLVGAIFSFGLASGFSGYEYELFLAITSLAILVSYADKKYLTLK LYF >gi|307679028|gb|GL456769.1| GENE 283 301790 - 304396 1614 868 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 1 859 1 808 815 626 43 1e-178 MNIEKMTTTLQEAIAEAQKVAVTRQHQEIDIAHLWKIFLQPNHFGRNFYTDAGLDVDAFE REVDNALDEYPSVAGGNVQYGQNLSQNLFHLLQEADSLREEFQDEFLSTEIVLLALMKLK NYRLTKYLMQQGITEKELRKNIEEMRGGDRVTSQNQEEQYKALEKYGVDLVQQVKAGKQD PIIGRDEEIRDVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVRKDVPENLKDKTIF SLDMGALIAGAKFRGEFEERLKAVLKEVKKSDGKIILFIDEIHNIVGAGKTEGSMDAGNL LKPMLARGELHLIGATTLDEYRQYMEKDKALERRFQKVLVKEPTVEDTISILRGLKERFE IHHGVNIHDNALVAAATLSDRYITDRFLPDKAIDLVDEASATIRVEMNSMPTELDQVTRR LMQLEIEEAALKKESDDASKKRLANLQEELADLREEANSMKMQWETEKEEVNAVSNKRAE IDKAKHELEDAENNYDLERAAVLRHGTIPQLEHELKELEEKNAKDNVKMVQESVTENEIA QVVGRLTGIPVTKLVEGEREKLMKLNETLHKRVIGQDEAVDAVSDAVIRSRAGLQDPNRP LGSFLFLGPTGVGKTELAKALAEDLFDSEDHMVRIDMSEYMEKHAVSRLVGAPPGYVGYE EGGQLTEAVRRNPYTIVLLDEIEKAHPDVFNILLQVLDDGRLTDSKGRVVDFKNTVLIMT SNIGSQLLLEGVTPEGTIPEEVENQVMNILKGHFKPEFLNRIDDTILFTPLSLDNVKGII GKMTAQLAHRLEQQEIVLEITDEAKTWIAENGYEPAYGARPLKRFITREVETPLAKEIVS GRVMPKTKVTISLLDNQLVFENEPIEEV >gi|307679028|gb|GL456769.1| GENE 284 304434 - 304913 547 159 aa, chain - ## HITS:1 COG:MA3568 KEGG:ns NR:ns ## COG: MA3568 COG3613 # Protein_GI_number: 20092374 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside 2-deoxyribosyltransferase # Organism: Methanosarcina acetivorans str.C2A # 4 106 7 108 140 79 47.0 2e-15 MTKIYFAGPLFSQADLRYNDYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALAD TENVLASDLLVALLDGPTIDAGVASEIGVAYAKGIPVVALYTDSRQQGADNHQKLDALNE VAENQFHYLNLYTVGLIKLNGRVVSSEEDLLEEIKQRLS >gi|307679028|gb|GL456769.1| GENE 285 304937 - 306157 1259 406 aa, chain - ## HITS:1 COG:BH1812 KEGG:ns NR:ns ## COG: BH1812 COG4552 # Protein_GI_number: 15614375 # Func_class: R General function prediction only # Function: Predicted acetyltransferase involved in intracellular survival and related acetyltransferases # Organism: Bacillus halodurans # 15 406 7 386 386 184 32.0 3e-46 MDEQEFRKQLTLKPVEEEHIDQFNELLSYVFQVTEADIEESGFENKRAFIKSKQPILELS KVFGWFHENQLISQIAIYPCEVNIHGALYKMGGVTGVGTYPEYANHGLMKDLIQTALEEM RQDKQWISYLFPYNIPYYRRKGWEIMSDKLSFKIRDTQLPKTVPVPGMIERLAVDHPDVF DVYARFARQNHGALIRSAFNWEEYWRFENEEERTAAVYYGANQEPLGVLFYWVADEVFHI KEMFYLNQEARNGLWNFITAHFSMVYWVKGDIYKNEPLAFLLEDSQIKESIEPYYMARIV DVKAFLENFPFESTAKPFHFVVKDPVAEWNNGIFGLIWDENDQVTITDEPLGTAVHLDIQ TLTCLVMNYRRPSYLHRIERIDTDKETLNSLERIFPDQEAYFSDYF >gi|307679028|gb|GL456769.1| GENE 286 306404 - 308239 2084 611 aa, chain + ## HITS:1 COG:SPy1053 KEGG:ns NR:ns ## COG: SPy1053 COG0481 # Protein_GI_number: 15675045 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane GTPase LepA # Organism: Streptococcus pyogenes M1 GAS # 1 610 1 610 610 1017 82.0 0 MNNKEMKARQEKIRNFSIIAHIDHGKSTLADRILEKTNTVSSREMQDQLLDSMDLERERG ITIKLNAIELNYTAKDGETYTFHLIDTPGHVDFTYEVSRSLAACEGAVLVVDAAQGIEAQ TLANVYLALDNDLEILPVINKIDLPAADPERVRTEIEDVIGIDASEAVLASAKAGIGIED ILEQVVEYVPAPSGDIEAPLKALIFDSIYDSYRGVVLNIRVIDGVVRPGDKIQMMSNGKT FDVTEVGVFSPKPIARDYLMVGDVGYITASIKTVQDTRVGDTVTLADNPAAEALPGYRKM NPMVYCGLYPIDTSRYNDLREALEKLQLNDAALQFEPETSQALGFGFRCGFLGLLHMDVV QERLEREFNLELITTAPSVIYHVNKTDGTTVVVDNPAEFPEPVTIESVEEPYVKAQIMVP NDYVGAVMELSQRKRGEFITMDYLDDYRVNVVYEIPLSEIVFDFFDKLKSSTKGYASLDY EMAGYRTSRLVKMDILLNAEKVDALSFIVHRDFAFERGKAIVEKLKKLIPRQQFEVPVQA AIGQKIVARSDIKALRKNVLAKCYGGDVSRKRKLLEKQKEGKKRMKQIGSVEVPQEAFMA VLKMDEDEPKK >gi|307679028|gb|GL456769.1| GENE 287 308430 - 309446 865 338 aa, chain + ## HITS:1 COG:AGl777 KEGG:ns NR:ns ## COG: AGl777 COG1879 # Protein_GI_number: 15890504 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 300 1 302 340 129 29.0 6e-30 MAGTIKEIAEKAGVSRGTVDRALNNRGRINPEVAEKIKTIAKEMNYVPKKKKMAKEEPIK LGVVTQLAKSSFMIPIRSGLQAVIGDLKKRNIDCFLEEIDGVDEAAQLQALERLLELGVK GIAIMPVDSVAIREKINQLTEQGIKVITFNSDIVGSKRQCFVGMDNFKSGKTAAGLLGML TKGEGDVLAITGYFGNSVNSLRVAGFVEELKQSFPQLKLTGVQSSFDSSDEVEKILSDTL ENYTNLKGVVVFSGGQAGIARVLKKRAGKDRPYVIIYDLTEKNIEMLKKNQVDFLIDQDG FTQGYRSLLLLANQLQNNKIMTEEMLFTDIIIKTKYNL >gi|307679028|gb|GL456769.1| GENE 288 309604 - 310638 893 344 aa, chain + ## HITS:1 COG:lin0403 KEGG:ns NR:ns ## COG: lin0403 COG0524 # Protein_GI_number: 16799480 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Listeria innocua # 10 330 9 321 325 309 48.0 4e-84 MSYISFDQSKEFDLVLLGRVAIDFNPAYNEQVKEEFKPLKNVHMFEKFVGGSPANISVGI TKHGMKAGFIGKVSDDQFGEYVIDYFNEQGIDTSQISKAQHGEKLGLTFTEMLSPKESSI LMYRNQAADLQLSVEDIDEDYLKRSKALLISGTALAESPSREAVLKAVMLAKKNNVKIIF DIDYREYNWKNVDEITIYYSIVAKESDIIMGSREEFDLTERLIQPNMTDDESAVFWHNCG AQIVVIKHGMKGSTAYTADQQQFSIKPFPVEARKGFGGGDGYAAGFLYGLFEGWEIIDCL EFGSAEASMMVKSNNCSDSLPTTQEVKEFIKLEKEIYGEMIARI >gi|307679028|gb|GL456769.1| GENE 289 310649 - 312565 1498 638 aa, chain + ## HITS:1 COG:BH2318 KEGG:ns NR:ns ## COG: BH2318 COG3962 # Protein_GI_number: 15614881 # Func_class: E Amino acid transport and metabolism # Function: Acetolactate synthase # Organism: Bacillus halodurans # 3 638 2 637 637 885 65.0 0 MEKTIRLTTAQALLKFLNQQYISIDGKETPYVEGIFHVYGHGNVLGIGQALEQDPGHLKS YSGKNEQGMAHAAIAFARQSLRKKIFAVSASAGPGSANLLTAAGTAFANNIPVLFLPADT FATRQPDPVLQQLEHESSVTFSTNDAFQAVSRYWDRINRPEQLMSALLRAFEVMTNPATT GPATICLPQDVESEAYDYPVEFFRKRVHYIDRRMPTIRELETASHLIKDSKHPVIIVGGG CKYSEAGESLQKISQVHQIPLVETHAGKSTVSWEFENNLGGLGILGTSAANKAVQQADLI IGIGTRYTDFTTASKSIFNFEQSKMININVSRPQTYKMEAFQIVGDARATLEGILPMIEG YRTAYGEKITELKNEWVKERERLKTTHFKRKDFDPEIKNHFTQDILNDYADSLNTTLTQT EVFVHLNDFVEDDAIVIGSAGSLPGDMQRLWNPVKENTYHLEYGYSCMGYEIAGAMGVRL ANPNQEVYALVGDGSFLMLHSELVSALQYDKKINIVLFNNSGFGCINNLQMENGGVSQGT EFRNTKGEIMNINYAKIAEGYGAKAYQVHSIEELKQAIVDAKNQMQSTLIEINVLPKTMT AGYDGSWWNVGVAEVSEKPAIQEAYQVKKEKLATARKY >gi|307679028|gb|GL456769.1| GENE 290 312604 - 313443 802 279 aa, chain + ## HITS:1 COG:lin0402 KEGG:ns NR:ns ## COG: lin0402 COG3718 # Protein_GI_number: 16799479 # Func_class: G Carbohydrate transport and metabolism # Function: Uncharacterized enzyme involved in inositol metabolism # Organism: Listeria innocua # 1 274 1 273 273 366 63.0 1e-101 MKKTLKHQPLIKELAPGVRQVQNIRKNNTDLQYIEFQVLELDNGAMYQEAGNELEVCIVV LTGKINVKVDDKWYENLGKRTSVFEKIPTDSIYIPAKTSFELIATSATVRLALCYSPAKK TLPVHVITAEENTVEKRGIYQNKRLVHNILPDNVDTASSLLVVEVYTEGGNFSSYPPHKH DQENLPDESYLEETYYHELNPEQGFVFQRVYTEDGSIDETMTVEHQNVVEVPKGYHPVGV PDGYTSYYLNVMAGPERIWKFHNEKKHEWILNRNELTNN >gi|307679028|gb|GL456769.1| GENE 291 313483 - 314940 1334 485 aa, chain + ## HITS:1 COG:BS_iolA KEGG:ns NR:ns ## COG: BS_iolA COG1012 # Protein_GI_number: 16081027 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Bacillus subtilis # 3 485 5 487 487 679 66.0 0 MTRFLKNYIGGRWVTSTATEFEEVINPATEEALVNVPLSSEAETAEAIRVADEAFQTWKK VSVPVRGRYLFKLHHLLMTNKEELARLITLENGKSLSESLGEVQRGIENVEHAASITNLI MGDSLSTAATDIEITNYRYPIGVVGGITPFNFPMMVPFWIFPMALAAGNTVVLKPSEKTP LLMEKIVELIEEAGFPSGVFNVVYGAHDVVNTLLRDPLVKGISFVGSKNVGEYVYKEGTK NLKRVQALTGAKNHVIVLKDANLDRAVKDIIGGSFGSAGERCMAASVIVVEETIADQFVE KFKAAAQTIKIGNGLEEGVFLGPVIRKEAQQRTFDYIQKGIDEGADLLLDGRENIPEKGY FVGPTIFDRVTMDMKIWQDEIFAPVASIVRVKNLEAAVTLTNQSEFANGSCLYTSNASAI RYFRENVDAGMLGINLGVPAPMAWFAFSGWKHSFYGDLHANGKDSVEFYTHRKVVTARYA PSEIN >gi|307679028|gb|GL456769.1| GENE 292 315114 - 316121 899 335 aa, chain + ## HITS:1 COG:BS_iolG KEGG:ns NR:ns ## COG: BS_iolG COG0673 # Protein_GI_number: 16081021 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Bacillus subtilis # 1 333 1 336 344 365 51.0 1e-101 MKVKVGVIGTGAIGIEHINRINHKTQGAFVTAVSDINVEAASKIAEEIGAQFFKTGEELI ASEEVEVVVVTSWDPTHEKYVLEAIKHGKYVFCEKPLAMDAAGCRRIVDAEVAYGKKLVQ VGFMRRYDRGYIELKEAIESKQYGEALMLHCAHRNPSADENYKTPMAISNTAIHEIDVLR WLLDEDYASVQMILPKKTSHTHADLHDPQLLIFQTKSGVTIDLEIFVNCRFGYDIKCDVV FETAEVGMTDPAYTKIKAAEKNYTPISPDWQTRFLDAYDYEFKLWVDSIKNDKLVGPTAW DGYVAAITMMACHESRESGEKVMIEIDEQPALYTK >gi|307679028|gb|GL456769.1| GENE 293 316145 - 317164 1062 339 aa, chain + ## HITS:1 COG:BH2220 KEGG:ns NR:ns ## COG: BH2220 COG0673 # Protein_GI_number: 15614783 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Bacillus halodurans # 1 339 1 339 345 398 52.0 1e-111 MENIRVGIVGLGRLGKVHAKNLSSAVSGCELTAACSLVESELAFAQKELGVKYTFSSYEE MVQSAVIDAVFIVSPSGFHCEQVRLAMENGKHVFTEKPLGIEIEDIKKTQEVIEKYPEQV FMLGFMRRYDESYQYAKKMVEDGEIGEVTLIRCYGIDPSDGLESFVKFAMNNDSGGLFLD MAIHDIDLVRWFTGQEVEQVWAIGKNAAYPELDQVGELETGAAMMSLKDKTMALLVAGRN ATHGYHVETEIMGTKGMLRVAQVPEKNLVTVMNNQGVVRPCSQNFPERFREAFIREAQEF ISCIQEKRQPAVNAEDGLQSTKIALACQESFDTNRLVQL >gi|307679028|gb|GL456769.1| GENE 294 317186 - 318076 1062 296 aa, chain + ## HITS:1 COG:STM4424 KEGG:ns NR:ns ## COG: STM4424 COG1082 # Protein_GI_number: 16767670 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate isomerases/epimerases # Organism: Salmonella typhimurium LT2 # 3 290 11 298 306 314 51.0 1e-85 MAKQIQLAIAPIAWTNDDMPELGSENTFEQCVSEMALAGFKGTEIGNKYPKDPQVLKQYL DIRGLKVASAWFSTFLTTKPFEETAEDFKKHRDFLHAMDAKVIVVAEQGHSIQGIMTAPV FNEKPIFSDEEWQKLAEGLEKLGDLAHEKGMEIVYHHHMGTGVQTTEEIDRLMKMTDPTK VKLLFDTGHLVFSGEDPIAIYQRYQDRIKHIHFKDIRQQMAEEVRTEEDSFLKAVKKGVF TVPGDGMIDFKPIWSAIEESGYRGWIVVEAEQDPAKANPFEYAVKARNYIRKVADL >gi|307679028|gb|GL456769.1| GENE 295 318100 - 319695 1392 531 aa, chain + ## HITS:1 COG:BH2222 KEGG:ns NR:ns ## COG: BH2222 COG4146 # Protein_GI_number: 15614785 # Func_class: R General function prediction only # Function: Predicted symporter # Organism: Bacillus halodurans # 6 530 6 528 580 435 47.0 1e-122 MNLFSIISFLVIVICVWIFAYSRSRSVDTSGSEGFFMGGRSLTALPIAGTIIMTNLSTEQ IVGQNGQSYHAGMEVMAWEVTAAIAIVALAVIFLPKYFKYGINTVSDFIEIRYDTVTKRI ISILFIVTYMISFLPVVLYSGSLVFNKIFHIDELLGVEPIVAIILVAMVIGIVGILYLLI GGLSLSANSDSIYGVGLLVCGLLVPILGLMKLGDGSFIGGIEQVVENTPWLLNSVGAIDS AVVPWPTLFTGMLFNNLYFWCTNQMIVQKALSGKNLAEAQKGAFLVGIFKVFGALFLVFP GIVARNLFGDALMSNPDNAYPYLVTEVLPKMLFGIFAAVIFGAILSSFAGALNATSTLFS LDFYKPIINKKADDKQIARAGKTVTVIVGIISIIVAPFISFAPAGLYQFVQEFNGLYNMP LLVIILFAFYSKKATAFGAKMTIAIHIVLYALSKVFLKDIHFLYVLSLLFFLDILILIVV SKIKPDGEFVLNSFDTKVNIEPWKHTKLVASILVVVVILTYAAFSPIGFAR >gi|307679028|gb|GL456769.1| GENE 296 319723 - 320028 393 101 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315159142|gb|EFU03159.1| ## NR: gi|315159142|gb|EFU03159.1| PTS system, Lactose/Cellobiose specific IIB subunit [Enterococcus faecalis TX0312] # 1 101 7 107 107 171 100.0 1e-41 MSKNILIICETGISASLLVSKLLEAIREKELSYDLDYAPVCRIEEKLGYKEYDVLMLTPQ VARVKEKVEKYLEGRQGQVVFIDQEDFRYMNTEKILASIEK >gi|307679028|gb|GL456769.1| GENE 297 320231 - 321064 901 277 aa, chain + ## HITS:1 COG:no KEGG:EF2239 NR:ns ## KEGG: EF2239 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 277 1 277 277 564 99.0 1e-159 MTCISLSILNQEQEVRKAKIDDSDSLKELTITGKDFVCLAARDCQLQDGDVIQVCLDTPN TYLMVKLDATLDSSLIYVPEQKWTFPIIKNENAIEARAAYRFETKKPYISVRIATKEEIK SYRNWALNPHDLQHFTGAYPHASANVETRNDATFFACNAIDGTFANLYHGPYPYQSWGIN QQLDAALKIEFGREVLLDKVILTLRADFPHDNYWQQVTLKFSDGTHEVFKTVKTEQRQSF TFAKRAVEWVILTELIQADEPSPFPALTQIELFGQNK >gi|307679028|gb|GL456769.1| GENE 298 321105 - 322166 1076 353 aa, chain - ## HITS:1 COG:SP1854 KEGG:ns NR:ns ## COG: SP1854 COG1609 # Protein_GI_number: 15901682 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 1 347 1 331 335 195 35.0 1e-49 MATITDIAKVANVSISTVSRVLNYDPNLSVTEETKRKIFEAAETLNYTKYKTKNKNKQQE QLTPNLTVQTAPQEPSIAVVQWRSDDEELTDIYYMSIRLGAEKRAEELGYNILKVSQLEQ HNLQGIDGILAIGKFTQKTLQELQQLHPNLCVIGSNFPLEEFDSVNTDFYQATEIALTHL LELGHEKIAFIGAEESENMYGFRRYKTPTTNAYLDIMQHYHLFNEDYFILKENGMLDVKT GEQLTEEALEKWGNDLPTAILAYNDAFAIGVIHTLAAHGIKVPEEISVMGINDISISQYV SPPLSSVHAFTEEMGETGINLLHKRIQMPSIPRRVLLNTELVVRQSTTSPRQK >gi|307679028|gb|GL456769.1| GENE 299 322342 - 322728 319 128 aa, chain + ## HITS:1 COG:no KEGG:EF2237 NR:ns ## KEGG: EF2237 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 128 1 128 128 207 99.0 1e-52 MKRFSLFLLILLALTGCKSGEKEFDEESLQNLKETAQSYSETELQNGDVRLNEYISLKGE IVESDSRSSLIKKGDRFILKSGSSKYQVFNEQKKKLKIGDEVTVYGEYYGFLKGTLIESE ENHDSATN >gi|307679028|gb|GL456769.1| GENE 300 322709 - 324508 1901 599 aa, chain + ## HITS:1 COG:SMb20536 KEGG:ns NR:ns ## COG: SMb20536 COG4289 # Protein_GI_number: 16264263 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Sinorhizobium meliloti # 57 567 61 572 617 388 38.0 1e-107 MIQPRIRQNPFETYEEVAEGFEDLLAPLELFFDREYQGHLDLGTHGTVYSKGTRDAEAFL RPLWGLGPYVTQNESEYLNEFLTGIIEGTDPESSSYWGKTKDYDQLIVEMAALSTFLLLN KEKTWDQLTKEQQNNLHSWLIQANENIIPPNNWHFFRVLLNLAMKHCEMPYSKEQIAVDL AVIDRFYVGNGWYYDGVETQVDYYVSFAIHYYSLLYCRFAPEDTARVAIMKERATLFAQE FKYWFTQPGEAIPFGRSLTYRFAQVSFFSALVFADVEALPWGEIKGLISRHLHQWMNKDI FTTDGLLSVGYDYQNMVFAEGYNGPGSPYWAFKTFILLAVPKDHPYWQAETQPISFPEKH LPSPESRNYYQVNDAGTHGLMFPAGQFINYQAHAHDKYSKFVYSSHFGFSTIKSDYWYYE GAYDNCLALAEDDHYFRTKGLDDQYEILDDRIIHQWHPWSDVAIKTTIVPLEGQHLRIHE IETQRALVAYEGGFSIPLFDEKVTCVSDQMAEVKNAKGVSKVENINGFSEAAIIRTEPNT NLLYPLTELPYLKANLSKGKHLLISLVTGVLPNEQIEPVKVRLKENQLLVEEKVVILGN >gi|307679028|gb|GL456769.1| GENE 301 324524 - 325666 1260 380 aa, chain + ## HITS:1 COG:no KEGG:EF2235 NR:ns ## KEGG: EF2235 # Name: not_defined # Def: glucuronyl hydrolase, putative # Organism: E.faecalis # Pathway: not_defined # 1 380 1 380 380 753 99.0 0 MTENGQIEWLPKQISFALNKVRGNLETFKELVPPAASLNQIYYPEENIDWTASFWPGMLF LAKELTNSTEFDEVITTQMASFQHRLDEQIELETHDIGFLYILTAIADYQVNGHEASKEM ALQAADLLMKRYSPKAKIIQAWGNLDDPEQRGRMIIDCLMNLPLLYFAAKMTGKQEYYEA AYNHAKQTQKYIVRENHTTFHTYYFDTETGEALYGKTQQGYSDDSCWARGQAWGIYGFTL SYLYTGDSSFLETAKNVADYFIQELPEDKICYWDLIFNEGSEEERDSSSAAIAACGLLEL SRQLPLNDEKHGYYEKVALELLQALAEKYTTVLRPESNGLLLHGVYDKKTNTGVDECMIW GDYFYLEALTRLAKSWYSFW >gi|307679028|gb|GL456769.1| GENE 302 325716 - 326993 1666 425 aa, chain + ## HITS:1 COG:BH1864 KEGG:ns NR:ns ## COG: BH1864 COG1653 # Protein_GI_number: 15614427 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus halodurans # 13 350 12 364 461 106 25.0 1e-22 MKFWKKGLTAAALLAVAAVTLTACGGSSEKKATEKSEDGKTKLTVTTWNYDTTPEFEKLF RAFEAENPDITIEPVDIASDDYDTKVTTMLSSGDTTDILTMKNLLSYSNYALRNQLVDLT DHVKDLDIAPAKASYEMYEIDGKTYAQPYRTDFWVLYYNKKMFDEAGIAYPDNLTWDEYE ALAKKLSKPEEQVYGAYQHTWRSTVQAIAAAQNNANLIEPKYNYMETYYDRALRMQKDQS QMDFGTAKSTKVTYQSQFENSKAAMMYMGSWYMGTLLTNIDDGKTNVEWGIAEIPQQEKG KATTFGSPTSFAINKNSKKQKAAQKFLDFASGKEGAKLLAEVGVVPSYKTDEIDKIYFAR KGMPSDEVSQKAFNPDTINLEFPSDKNGAAIDKVLQEEHDLIMVGDEKPKDGIANMEKRV KAEID >gi|307679028|gb|GL456769.1| GENE 303 327144 - 328046 648 300 aa, chain + ## HITS:1 COG:lin0760 KEGG:ns NR:ns ## COG: lin0760 COG1175 # Protein_GI_number: 16799834 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Listeria innocua # 21 295 17 291 296 220 45.0 3e-57 MEITSKTKTANKLRRKNTWTALSFIAPNFIGFFLFTLIPVICSLILAFMSWDSFSTPEFV GMKNFTKMIHDDTFWISLKQTFIYTIGVVPLTLICSLGLAILLNRKIRGMKFFRTAFFFP YVTSLVAIAVVWNMLFHPTMGPINQFLKLFIENPPGWTSSSTWALPAIIIVSVWRFMGYY MILYLAGLQSVPRELYEAASMDGAGKWNQFLNVTLPSLRPTTFFVTIMLVINCFKVFDLV QVMTGGGPGRATNVLVYEIYNEAFVKFNFGYASAIAMVLFIIVLAITVAQFKWNQHQEKV >gi|307679028|gb|GL456769.1| GENE 304 328058 - 328936 949 292 aa, chain + ## HITS:1 COG:lin0219 KEGG:ns NR:ns ## COG: lin0219 COG0395 # Protein_GI_number: 16799296 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Listeria innocua # 27 291 17 281 282 211 42.0 9e-55 MEATFSKKENTRKAKTKKAEKVTPGGILVIILLTLLALITLVPFIWMVSASFKTNNEVFT IPIQWIPKSWHPENYSVIWERIPLLTFFKNTLFLSIVITIIQLFTSSFAAYGFSKMNFRG RDTLFITYIATIAIPWQSYMIPQFIMMRQLGLTDTLWSLVLLQAFNAFGVFLLKQYYSSI PDSLCESARIDGLSEWGIYWKIILPLTKPALASLTIITFVNTWNDYMGPFIYLSSTENKT IQLGLKMFVGLFDAEYALIMAASVVSILPVGIVFLAMQKYFVEGIATSGMKN >gi|307679028|gb|GL456769.1| GENE 305 328949 - 329620 646 223 aa, chain + ## HITS:1 COG:no KEGG:EF2231 NR:ns ## KEGG: EF2231 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 223 1 223 223 365 98.0 1e-99 MFTKQTFDNNIYMKIFRWLYILFIGNLGLLLVNIPFFIAVISLDIDPRNLPLFVVTLLPM GAGMIALLGLIDTFKEEKELDPFKTFFQKFRQFGFRGFLISLLGLGSSIISVTDIFFFAK TTIGKWFIPLMVLLLIFGLAIMLNAWYFQVRNPQASFKDVFRISIYYGLRKWYVSCLNVF LLFSMFAMMFLKPQFGFVVTPVLFLGIIYLNTGKLHEKQKKNK >gi|307679028|gb|GL456769.1| GENE 306 329721 - 330689 931 322 aa, chain + ## HITS:1 COG:no KEGG:EF2230 NR:ns ## KEGG: EF2230 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 322 1 322 322 518 99.0 1e-145 MKKKIIILSSFLIGAIFVLVIFTTSQQSMINNEAIQVEELIVYGDKNMNRVAKQFSDQNN LTSFGKNFWRKTYNGKSPTQELLKVATEDLVQHKMIKQLATELEIAHSQTFGQEKKEWQD QKSSLTLWQFLDAKDQQLQDQIKEKLMEKEKPTQKELRQAFEQLDDKYKKTGYFVEAIEI PTFSGKQAELEKIAEAISPNLSYEETLLEWQNKLPNLVIESYQLKSAEIQKEDIYSLSVG EILSEKAVGTVVKGYHENQYFYIFNKEGGQLLQFEEAPQFGKNAYINTRYKEKLATYQQA TKVDLLEKDREKFFQNYQNKNS >gi|307679028|gb|GL456769.1| GENE 307 330700 - 334479 4078 1259 aa, chain + ## HITS:1 COG:no KEGG:EF2229 NR:ns ## KEGG: EF2229 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 1259 1 1259 1259 2351 99.0 0 MRKKAYFKSVTIFLSILLVFSQLQLFSLPAYGETVSDQPLLFRSVGVAQSGTTYYVDGEG GNNANDGQSPASAWRDFEKVNQTEFQPGDHLLLNAQSTWNNQLLHPKGNGTAAQKIVIDF YDTNDKGETIFETTRRPIINGGGTYSTGTFKRAISGAVQLVNQEYWDISNLEVTNTPELD NLEGYKKPGDAQRAGILVLGYEQNRTFNSVTIRNNYVHDVQTEYYLNLSGNTATKRLKAV GGIIVLGSWFDENGNVVTAANDHRTTTGFNDILIENNVIQRVGLEGIRTKADSDTSRGNT FYKTFSNITIRNNYLEDIAGDGIVLSEAKSGGVVEGNVAVRMCNADYGTQNYAGVWAMSV DDGLFQYNEVYGIKYGFNDAEAYDVDMQSNNVIYQYNYSHHNTGGFLLLMSDQKNSVIRY NISANDGGGNRGTGKDNPGGAGGYNYKEQSIFHYWVKNDGAAMPTIHNNTIYVGDGISTS LFGEGNSSDNSGTVANFYNNILYKEGTGQLKFLSNYPTNGTQPIERKMVDNPEKYFKNNV IWPKEIATEKSGATVEKLVSSGNIFEKPQLEITDNPEKVKELAEQEFTTLKPTKDNVVEF TSKERLRQRAQMFQLKETSPAIGKGLSEVNSAAEDFFGNSLKNKVLDIGAQQASTIEKSI RYQNQVLEISSATGVYPNLPEQVELTYEEVVNEEVVATGKKEFKLQWEAIPQEKINTAGT IEVAATVIGLPIDAVKVTAKVSFEGELGEGKDTVKLKTAQTAYVQKSDGNRAYSAIAGGT AAISSGDAYKYPYGVNYTGNYALKLKNASSAGYNRRIYVEIDTQELKNYQSLKSANLELN VMRYDAWNGAGNTNDERLKNTQFQVDVYGTDTNWMSNTITWNNGPNNLNVPNEEFIARQS FTNSSIMNNQNTISIDISNYLRKLIQSGEKIPAKLSFLLAITDSRLPGYDSDNAGFDAFS KEGAQKAYQDFLAGKLTLPTGQQLTEDSLAPKIVLSNVFEVKHESIEVTTEAGQAPKLPE KTTIFYSDGSQREVTVNWSEVPASSYQKEGTFTVVGRVAGVSMPIIANVKVTAKHIVGFK ELPTLDRLTGTSRGELNLPTEVIAKLDDGSETKLKVISWDDDVSNYSPSSPPGTYQFPAA VEEKIGIANPDERKIFQVVQTHAIPERIQFATETATIKSGENYQIQSKVIGQAPHTETDA WSSQVTYELVTPDAGNTVSVDENGLIRTEATTAAGNYQIKVTSKVLPIVTAQFSIKVTK >gi|307679028|gb|GL456769.1| GENE 308 334641 - 335645 1522 334 aa, chain + ## HITS:1 COG:SPy2207 KEGG:ns NR:ns ## COG: SPy2207 COG0180 # Protein_GI_number: 15675940 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 4 334 6 340 340 443 67.0 1e-124 MNTILTGDRPTGKLHLGHYVGSLKKRVEMQADPTNQLFVMIADLQALTDNAKNPEKVSAN VLEVALDYLAVGLDPTKTTIFIQSQIPQLAELTMYYLNLVTTSRVRRNPTVKAEIEQKKF GEGVPTGFFIYPVSQAADITAFQANLVPVGEDQKPMLEQAQEIVHSFNQTYGEVLVRPEA VLPPKGMGRLPGIDGNGKMSKSLGNGIYLSDPAEVVQKKVMSMYTDPNHIRIEDPGQVEG NMVFTYLDVFGKEKEYIEELKEHYRHGGLGDVKIKRYLIDVLEEELAPIRRRREELAKNP EAIMEMLHKGSLAAEKVAAQTLTEVKKAMGIQYF >gi|307679028|gb|GL456769.1| GENE 309 335699 - 337477 207 592 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 353 578 2 230 245 84 28 5e-15 MKKTMNLQSFKRFWKMIKPEHPIFYGLMICSLIGNLLIVAMTYIMAIGIDNLLEAIKRVG LKGMTLPLVEEALLGPVLLLILFSIISSITSFIQERAMASLSERVTLRIRKEVTKKFKTL PMAFFDNHQVGDIISRSTTGLNQLSQVLLTGINQFFTSVVTILFAGIMLFYIDAKLTILV LLLIGGSTFMTTKIANKNKVFADQSQAELGQLNNKMEEYLAGNLVTKTFNQQQNAEKTID AVNQQHYRAFKKAQFLNFAIYPAIRFINQLAFIISAILGAMLVLSGGITIGFLQAYLQYI NQISEPISTASYVINSIQAAMASIDRIFVILDEADEQPEATHLETISSPKGAIEFKNVQF GYTPEKILMKNVDFSVQPKKTVAIVGPTGAGKTTLVNLLMRFYEINQGAITFDGIDITKL SRQNLRNLFGMVLQNTWLFEGTVADNIAYGKKDASREEIIEAAKIAQCDHFIRTLPQGYD TIISSENGALSQGQQQLLTIARIILANPPVVILDEATSSVDTRTEAHIQKAMETVTENRT SFVIAHRLSTIENADLILVMKNGDIIEKGTHQELLQAPTLYASLYNSQFQTT >gi|307679028|gb|GL456769.1| GENE 310 337530 - 339257 195 575 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 333 558 278 509 563 79 27 1e-13 MKLMKEFIKENKWIVLATTLTICLQIAGTLGVPKLVGKLIDVGIVSGDQQVIKTIGIQMF LVAFIGTIAAIISSYLSALVAAKFGFQVRGLFFKKFQQFSMKNVDKFGSNSLLTRMTNDV DNVQTMIVLFCQLIFPAPIISLFALVMTFSYSVSLAWVTLASIVFYLVVVYFLMKKGTPL SLKIQPKMDRITTTLREFFTGINMIRAFNNQDFEEQRTNQTFKNYAERMSKVNRIFAWIT PVAFLLMGVVYASILWFGGNLVAVGTLQIGTVTAVIEYTLLTLAYLMIAAMVLVVIPRSV ASLNRLQEVLSEEIEISDPHTEATIAYHPEKALICFDHVTFQYTETADPVLENVSFVIPK GKTTAIVGATGAGKSTLVKLLLRINDVTAGTISYSGTDIRSLSQQTIRQVISYVPQKAFL FSGTILSNLLMGNAKATTEEIRTALEISQSSEFIDSLPQGIESFVAQGGSNYSGGQKQRM CIARALIKPADVYIFDDSFSALDYKTDAALRAALHAQMSDKTLLIVAQRLSTIMNADNII VLDEGRIVGQGTHADLLTTNSYYQDFAKSQGILPK >gi|307679028|gb|GL456769.1| GENE 311 339372 - 340139 921 255 aa, chain + ## HITS:1 COG:no KEGG:EF2225 NR:ns ## KEGG: EF2225 # Name: not_defined # Def: MerR family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 255 1 255 255 464 100.0 1e-129 MEKNYTIKDVSELLNIPKSTIRYWDEQGLISTTRNEENGYRTFDLEDLFKIYDIDFYRKM GIPIKDMLNLYKKTPTDLYATMEATEEQLGQEIKRLQHKYKEIKKRKLHLHALIDLETLV FSDEPIPFDKIVVVDIEDPEEMKVYMEHISTLGIYGDLSESNELTYGICLANHVNKKSLD KVIWLKESSSQYKGFILKVNTQDTRLNNIEEVKKRLAKQGFETGIVVGEHILTQLEEENQ YIEYYYGWIEILGEK Prediction of potential genes in microbial genomes Time: Tue Jul 5 18:39:06 2011 Seq name: gi|307679027|gb|GL456770.1| Enterococcus faecalis TX0312 genomic scaffold Scfld31, whole genome shotgun sequence Length of sequence - 844 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 843 890 ## COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase] Predicted protein(s) >gi|307679027|gb|GL456770.1| GENE 1 3 - 843 890 280 aa, chain - ## HITS:1 COG:STM4446 KEGG:ns NR:ns ## COG: STM4446 COG1921 # Protein_GI_number: 16767692 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine synthase [seryl-tRNASer selenium transferase] # Organism: Salmonella typhimurium LT2 # 2 280 5 283 372 296 57.0 2e-80 SYEKFHLKEVINASGKMTILGVSKVSEAVLAAQRFGGEHFFEMSEFSVQTGAFLADLLKV EDAQIVSSASAGIAQSVAALIGKGSLYHAYHPYTEKIEQREIVLPKGHNVDYGTPVEVMV AQGGGQVVEAGYANMCSPEHVEMMISEKTAAILYIKSHHTVQKSMLTVAEAAKVAQRHKV PLIVDAAAEEDLFKYTEAGADLVIYSGAKAIEGPSAGLVVGKKEYIDWVRLQGKGIGRAM KIGKDNILGFTQAVEEYLAHGSESGASMQERLKPFVEAIN Prediction of potential genes in microbial genomes Time: Tue Jul 5 18:39:21 2011 Seq name: gi|307679026|gb|GL456771.1| Enterococcus faecalis TX0312 genomic scaffold Scfld39, whole genome shotgun sequence Length of sequence - 46469 bp Number of predicted genes - 52, with homology - 52 Number of transcription units - 21, operones - 10 average op.length - 4.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 114 229 ## COG1087 UDP-glucose 4-epimerase - Prom 336 - 395 6.4 + Prom 122 - 181 8.0 2 2 Tu 1 . + CDS 382 - 549 364 ## EF2784 hypothetical protein + Term 593 - 632 2.4 - Term 624 - 672 16.5 3 3 Op 1 . - CDS 713 - 2551 1609 ## EF2785 hypothetical protein 4 3 Op 2 . - CDS 2565 - 2915 527 ## COG3189 Uncharacterized conserved protein - Prom 2935 - 2994 1.8 - Term 2990 - 3027 6.4 5 4 Op 1 2/0.000 - CDS 3037 - 3435 586 ## COG0607 Rhodanese-related sulfurtransferase 6 4 Op 2 5/0.000 - CDS 3451 - 4422 1107 ## PROTEIN SUPPORTED gi|116517028|ref|YP_816079.1| glucokinase 7 4 Op 3 3/0.000 - CDS 4423 - 4641 404 ## COG4483 Uncharacterized protein conserved in bacteria 8 4 Op 4 4/0.000 - CDS 4659 - 5369 724 ## COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) 9 4 Op 5 . - CDS 5380 - 5922 652 ## COG0212 5-formyltetrahydrofolate cyclo-ligase - Prom 5942 - 6001 4.0 10 4 Op 6 . - CDS 6010 - 6780 789 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 6807 - 6866 5.7 + Prom 6864 - 6923 8.4 11 5 Tu 1 . + CDS 6946 - 7521 714 ## COG3152 Predicted membrane protein + Term 7535 - 7568 3.1 + Prom 7523 - 7582 8.0 12 6 Op 1 . + CDS 7626 - 9176 662 ## EF2794 hypothetical protein 13 6 Op 2 . + CDS 9197 - 10261 754 ## EF2795 LysM domain-containing protein + Term 10481 - 10530 16.5 - Term 10454 - 10498 0.1 14 7 Tu 1 . - CDS 10521 - 11585 628 ## EF2796 hypothetical protein - Prom 11669 - 11728 4.6 - Term 11752 - 11804 4.2 15 8 Tu 1 . - CDS 11905 - 12090 283 ## gi|315158982|gb|EFU02999.1| conserved domain protein - Prom 12119 - 12178 6.1 - TRNA 12180 - 12269 62.4 # Ser CGA 0 0 - Term 12305 - 12352 8.3 16 9 Op 1 . - CDS 12365 - 12514 267 ## PROTEIN SUPPORTED gi|29377324|ref|NP_816478.1| ribosomal protein L33 - Prom 12562 - 12621 5.8 17 9 Op 2 . - CDS 12640 - 14778 2514 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 - Prom 14837 - 14896 8.7 - Term 14882 - 14929 15.2 18 10 Tu 1 . - CDS 14943 - 16880 2663 ## COG0441 Threonyl-tRNA synthetase - Prom 16989 - 17048 6.5 19 11 Tu 1 . - CDS 17277 - 17456 292 ## COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog - Prom 17486 - 17545 7.3 20 12 Op 1 1/0.000 - CDS 17575 - 18285 898 ## COG1876 D-alanyl-D-alanine carboxypeptidase - Prom 18315 - 18374 4.5 21 12 Op 2 40/0.000 - CDS 18383 - 19495 919 ## COG0642 Signal transduction histidine kinase 22 12 Op 3 2/0.000 - CDS 19488 - 20192 557 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 20213 - 20272 2.1 - Term 20229 - 20279 11.1 23 12 Op 4 . - CDS 20291 - 21736 1573 ## COG1376 Uncharacterized protein conserved in bacteria - Prom 21813 - 21872 3.1 24 13 Tu 1 . - CDS 21883 - 22746 769 ## EF2861 aminoglycoside 6-adenylyltransferase - Prom 22921 - 22980 5.6 + Prom 22778 - 22837 9.5 25 14 Tu 1 . + CDS 22868 - 23449 611 ## COG1434 Uncharacterized conserved protein + Term 23452 - 23500 15.6 + Prom 23488 - 23547 4.0 26 15 Tu 1 . + CDS 23607 - 24551 1212 ## EF2863 endo-beta-N-acetylglucosaminidase + Term 24590 - 24635 5.6 - Term 24645 - 24679 4.3 27 16 Tu 1 . - CDS 24831 - 25649 614 ## EF2864 hypothetical protein - Prom 25809 - 25868 7.7 - Term 25815 - 25867 16.5 28 17 Op 1 . - CDS 25896 - 26615 1091 ## COG0217 Uncharacterized conserved protein - Prom 26639 - 26698 3.4 29 17 Op 2 3/0.000 - CDS 26702 - 27880 790 ## COG1323 Predicted nucleotidyltransferase - Prom 27902 - 27961 4.8 - Term 27910 - 27948 -0.7 30 17 Op 3 6/0.000 - CDS 27970 - 28710 902 ## COG0500 SAM-dependent methyltransferases 31 17 Op 4 6/0.000 - CDS 28712 - 28861 145 ## COG0799 Uncharacterized homolog of plant Iojap protein - Prom 28962 - 29021 3.5 32 17 Op 5 9/0.000 - CDS 29097 - 29687 961 ## COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism 33 17 Op 6 7/0.000 - CDS 29665 - 30324 647 ## COG1057 Nicotinic acid mononucleotide adenylyltransferase 34 17 Op 7 2/0.000 - CDS 30342 - 30653 286 ## PROTEIN SUPPORTED gi|15901580|ref|NP_346184.1| hypothetical protein SP_1748 35 17 Op 8 6/0.000 - CDS 30677 - 31786 1418 ## COG1161 Predicted GTPases 36 17 Op 9 . - CDS 31783 - 32310 632 ## COG2179 Predicted hydrolase of the HAD superfamily - Prom 32469 - 32528 10.2 - Term 32475 - 32525 3.1 37 18 Op 1 10/0.000 - CDS 32532 - 33320 1017 ## COG0825 Acetyl-CoA carboxylase alpha subunit 38 18 Op 2 4/0.000 - CDS 33322 - 34188 801 ## COG0777 Acetyl-CoA carboxylase beta subunit 39 18 Op 3 4/0.000 - CDS 34244 - 35614 1614 ## COG0439 Biotin carboxylase 40 18 Op 4 4/0.000 - CDS 35622 - 36047 603 ## COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases 41 18 Op 5 4/0.000 - CDS 36051 - 36539 640 ## COG0511 Biotin carboxyl carrier protein 42 18 Op 6 11/0.000 - CDS 36541 - 37776 1466 ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase 43 18 Op 7 26/0.000 - CDS 37795 - 38532 214 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 44 18 Op 8 3/0.000 - CDS 38536 - 39465 1122 ## COG0331 (acyl-carrier-protein) S-malonyltransferase 45 18 Op 9 . - CDS 39498 - 40454 1051 ## COG2070 Dioxygenases related to 2-nitropropane dioxygenase - Prom 40528 - 40587 1.8 46 19 Op 1 . - CDS 40591 - 40818 532 ## EF2884 acyl carrier protein 47 19 Op 2 4/0.000 - CDS 40871 - 41836 1101 ## COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III 48 19 Op 3 . - CDS 41852 - 42292 523 ## COG1846 Transcriptional regulators - Prom 42334 - 42393 4.5 - Term 42607 - 42658 8.7 49 20 Op 1 . - CDS 42682 - 42912 309 ## EF2888 hypothetical protein - Prom 42940 - 42999 7.0 50 20 Op 2 . - CDS 43013 - 43903 1216 ## COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases - Prom 43935 - 43994 6.9 - Term 43917 - 43972 11.9 51 21 Op 1 25/0.000 - CDS 43999 - 45198 1338 ## COG0438 Glycosyltransferase 52 21 Op 2 . - CDS 45245 - 46249 1253 ## COG0438 Glycosyltransferase - Prom 46368 - 46427 6.3 Predicted protein(s) >gi|307679026|gb|GL456771.1| GENE 1 3 - 114 229 37 aa, chain - ## HITS:1 COG:lin2620 KEGG:ns NR:ns ## COG: lin2620 COG1087 # Protein_GI_number: 16801682 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Listeria innocua # 1 37 2 38 328 65 83.0 2e-11 MSILVLGGAGYIGSHAVDQLISKGYAVVVVDNLLTGH >gi|307679026|gb|GL456771.1| GENE 2 382 - 549 364 55 aa, chain + ## HITS:1 COG:no KEGG:EF2784 NR:ns ## KEGG: EF2784 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 55 1 55 55 72 100.0 5e-12 MKKFVSGMLVGTAITVAALAGVATTIKKTVIDPIEEKEDMIEENRKKAMRKRIAR >gi|307679026|gb|GL456771.1| GENE 3 713 - 2551 1609 612 aa, chain - ## HITS:1 COG:no KEGG:EF2785 NR:ns ## KEGG: EF2785 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 612 1 612 612 1234 99.0 0 MKIAIVGAGPRGLSAAERVIEWARKTEINVQLTLFDPYGPGGKIWRAEQPNYLLMNTVIS QVTLFTDESFSGEGPIVKGPTLYEWTQTEAAQYIQQQQPYNYLELLKECHRLGPNDHCSR AFYGMYQKWFYTYLATRCNEQTSLTFFKEPVTAVRAGEDNYYVYTQSIEFTADKVILALG HQENELTTVEQELADYAKEHRLFYSSPKNAADALLALANIPAKQPVVLKGLGLAFFDYLS ALTIGRGGVFSRQNGRLRYEPSGREPIIIAGSGRGFPSHPRGINQKGYGEAYQPVFLTET YLAECRKKGQVTGAEFFGYLKKEVEYVYYTCLIEEKYPHLSKEAFQQLFIQTKGAPESLA HFEKQDWFDWQALEHPETKKTTHESFRSFLLEYLKWDIQEAEKGNLSGPLTTALDSLKDL RDQIRFVLDEGLLTNDESQKWLWHWFTPLNTFLSVGPSVERTEELQALVELGLVTILGPE MRVEMKAGQFITYANLFPENRYNSHFLIEARIPKVNNEKSLNPLTRQLLADKLATLHQLA LADGQIVKTGALLIVPATNQVITKDGQVATGLFSCGIPTEGIHWLTAAAARPGVDPWNMR DMDRIAATIFNS >gi|307679026|gb|GL456771.1| GENE 4 2565 - 2915 527 116 aa, chain - ## HITS:1 COG:BMEII0787 KEGG:ns NR:ns ## COG: BMEII0787 COG3189 # Protein_GI_number: 17989132 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Brucella melitensis # 2 116 4 115 116 115 53.0 2e-26 MIQIKRAYEAPTEQDGYRVLVDRIWPRGKSKESEKLDEWLKEVAPSTELRKWFNHEANKY PKFKQKYQEELKHEPTATAFKQLQTIVKNQPVVTLVYGAKDTVHNQAVVLKELLEK >gi|307679026|gb|GL456771.1| GENE 5 3037 - 3435 586 132 aa, chain - ## HITS:1 COG:lin1388 KEGG:ns NR:ns ## COG: lin1388 COG0607 # Protein_GI_number: 16800456 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Listeria innocua # 22 130 18 126 126 117 55.0 5e-27 MSILWVINGILLVIVLAMVFNELYLKIMVKRSAKMLTEEEFKETMRKAQVIDVREKDTFD AGHILGARSMPYSMLKTTIGSLRKDQPVYLYDQKKALSIRAANLLRKNGYTDIYILKGGY DGWTGKVKKRNS >gi|307679026|gb|GL456771.1| GENE 6 3451 - 4422 1107 323 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116517028|ref|YP_816079.1| glucokinase [Streptococcus pneumoniae D39] # 1 318 1 319 319 431 65 1e-120 MDKKIIGIDLGGTTIKFAILTTDGVVQQKWSIETNILEDGKHIVPSIIESIRHRIDLYNM KKEDFVGIGMGTPGSVDIEKGTVVGAYNLNWTTVQPVKEQIESALGIPFALDNDANVAAL GERWKGAGENNPDVIFITLGTGVGGGIVAAGELLHGVAGCAGEVGHVTVDPNGFDCTCGK RGCLETVSSATGVVRVARHLSEEFAGDSELKQAIDDGQDVSSKDVFEFAEKGDHFALMVV DRVCFYLGLATGNLGNTLNPDSVVIGGGVSAAGEFLRSRVEKYFQEFTFPQVRNSTKIKL AELGNEAGVIGAASLALQFSKEK >gi|307679026|gb|GL456771.1| GENE 7 4423 - 4641 404 72 aa, chain - ## HITS:1 COG:SPy1530 KEGG:ns NR:ns ## COG: SPy1530 COG4483 # Protein_GI_number: 15675429 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 62 1 62 67 66 59.0 9e-12 METLYDVQQLFKQFGMYIYVGARIYDIELMMIELKKLYEGQLVDRDTYLQARHILQREHR IEESRGKQKGID >gi|307679026|gb|GL456771.1| GENE 8 4659 - 5369 724 236 aa, chain - ## HITS:1 COG:lin1374_1 KEGG:ns NR:ns ## COG: lin1374_1 COG0705 # Protein_GI_number: 16800442 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein (homolog of Drosophila rhomboid) # Organism: Listeria innocua # 6 183 173 345 345 137 41.0 2e-32 MNYQTEMKLKRLKNQPFITYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNH EYWRFITPMFLHIGFMHIILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFG TPNSVSAGASTALFGLFGAFVILGRHFRDNPAIMYMVQRYSMFIVINLLFNLFSSSVDMM GHVGGLIGGLLVATAFAVPNREEAFNKHERIMATLIFIFLVVICLLLGFKKYGLPV >gi|307679026|gb|GL456771.1| GENE 9 5380 - 5922 652 180 aa, chain - ## HITS:1 COG:lin1373 KEGG:ns NR:ns ## COG: lin1373 COG0212 # Protein_GI_number: 16800441 # Func_class: H Coenzyme transport and metabolism # Function: 5-formyltetrahydrofolate cyclo-ligase # Organism: Listeria innocua # 25 177 22 176 179 119 43.0 2e-27 MEKNKLRKVGLTALEWLKQHPEIKQHKESSLYEQLFASQQWQQAQTIGMIRSLPLELSTQ PIFERAMQEGKQVAVPRTFKGGKMYFYQVFPETVYDTSAFGVEEPPLTAAEITATAIDLL IVPGIVFNRAGYRIGFGGGFYDRYLEHFSGHSCSLVFSEQLHEQWQPEAFDQPIEQLFIQ >gi|307679026|gb|GL456771.1| GENE 10 6010 - 6780 789 256 aa, chain - ## HITS:1 COG:lin2363 KEGG:ns NR:ns ## COG: lin2363 COG1073 # Protein_GI_number: 16801426 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Listeria innocua # 3 249 2 248 250 169 36.0 6e-42 MKISIRHRYIAKIPALEVTTEEQKNEALPLIVYYHGWQSAKELSLTQARKLAHEGFRVIL PDAMNHGERKTGPISTIPSITFWSSIQYNLIEFPVIIHHFHKLGLIKENWIGVGGVSMGG ITTSALMTQHPEIQAAACLMGTPYPARYIQRVIQRAKEFAIFVPKDLPLLLSWVHQYDLS QTPERLQERPMLFWHGTEDEKIPYEDMADFEQLVSGKTYARNTQFITEIGERHLVKGETM DLVVDFFKEASKTLEK >gi|307679026|gb|GL456771.1| GENE 11 6946 - 7521 714 191 aa, chain + ## HITS:1 COG:L133792 KEGG:ns NR:ns ## COG: L133792 COG3152 # Protein_GI_number: 15673282 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 8 185 3 169 175 62 28.0 5e-10 MVKIEEKGKVTFGQAFKDYFRGYVDFKGRTTRAGYWWMTLVLSILALIFYIAIVGKAVSA ILAAEYFETYDFGNLLPLMLFALVLWLALLLPTWAMCVRRYRDAGMTGWGVLVLYLLSIA CSYTQVFSVMSTLKYDVQTDTVITGGSPVFLFFTLVISLFFFLLTVLPTDKLTTTSQNSV LRFFFRYKEVK >gi|307679026|gb|GL456771.1| GENE 12 7626 - 9176 662 516 aa, chain + ## HITS:1 COG:no KEGG:EF2794 NR:ns ## KEGG: EF2794 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 516 1 516 516 861 98.0 0 MATFKRILNLENYIFTFFILFVFYGAINSPYSLVKILWEKPKHLLVLLPLLIILLLIIYK NKKFLYTKIQALWYLIKAHDRVVIIGSLISLFLLQLLLLTQITVPIGWDVFDNFHSITTE NRDYSKIVLSLNPNNEFFFFMMYYLNKFLRFIDVTESWSNTWFSWQVVNCLFINSSLFLF YHASKRVFNPLTAFVAYSLFFLSFGLSPWLLTPYTDTAVLLFINLVFFAYSLFEKVSPPF VKYCLLLFIGIGLAWCFLMKPSSIIFFIAFSCIKVLQLLLVNRNKQSIVKLTVVALFLLT GFASAYYSFQFFVEKQTITEIDKEQAKPWTLFVMMGLTGTGGYNDADTQAVNQLPTQEAK KAYTIKMIQDRLKNKGFFGYLRFLAQKNRHNTANGDFDWGWDGGDLIPETPSKNRWQEHL RSLYYPQNQKSNYLRIYMHFFYLLTLLGLLFSIPLKDSKNNYAILKLAFIGAILYLLLFE GGRSRYLIQFMPFWYLLSASGWLGLREIRRYKKTVK >gi|307679026|gb|GL456771.1| GENE 13 9197 - 10261 754 354 aa, chain + ## HITS:1 COG:no KEGG:EF2795 NR:ns ## KEGG: EF2795 # Name: not_defined # Def: LysM domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 354 1 354 354 562 98.0 1e-159 MKKSLLGLIVFLSLLNLTSCRNKVTTKELMANEWAVNSNVDEVVMIVSFSEDTATFKINT DEHTSTAKNDLEKAGEELGKQIANKIEYKVKYHLKNNQIRWKNEGKEVAYKIKKEKQNLL FTPTKTNNSDNQTKLVLKPYTKKSIDSSTQKDKTEETSSNYQNVSSETNQSTSSSTTKEP LPQVSLADFIGGWGIPQSDNLFFINADGTLTSITQSNVPLQNVSFSVDENGNQTMTFLLN NTPRTVTKNNDGTLTVNGQIYTYLGNITLEQLIERNTQTQQVFEQSEQQPPQNSDSREQI QNSKSDQPIYDTVRSGEGGRQLAERNGLTLEELLALNPGIETSVFYPGQSLRIK >gi|307679026|gb|GL456771.1| GENE 14 10521 - 11585 628 354 aa, chain - ## HITS:1 COG:no KEGG:EF2796 NR:ns ## KEGG: EF2796 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 354 1 354 354 575 99.0 1e-162 MTFYQLLQLDPFILKQKIHQADTKKQRRYFWRALLIRDILLVSFAILWVSTITFFFGKAV APFSIVLFCLLLSIRFVSYGYREKQALLSLGIVLTILGVSPLISLISVSFLQLGLHFICL LALFFLTGKNPKMGNPGLYTFSYLYLVGTVHYQSFQQLEQTFFVLVFAYLLLAFVYHVKH KKLDQEITFIQMVTENGFFNQRNIWFGYYALGISLLLFIGTHLQIDRFMWATFASSSLFS GYDTFKLSERAKERIIGVVIGSLVSAILLFYIPTNLLGILGGLCLGLCTSYKSKTIFNCV GAIMAASMIFGLETSLYLRILLNMLGLAYGLLYHFVFVKTMSYCNRKEWLKLSE >gi|307679026|gb|GL456771.1| GENE 15 11905 - 12090 283 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315158982|gb|EFU02999.1| ## NR: gi|315158982|gb|EFU02999.1| conserved domain protein [Enterococcus faecalis TX0312] # 1 61 1 61 61 93 100.0 4e-18 MSNYEEKEAQALVKIADVLNKLDASLEELASLDEDTKKHSMKKWIVEKKPFMRLKNCTRS W >gi|307679026|gb|GL456771.1| GENE 16 12365 - 12514 267 49 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29377324|ref|NP_816478.1| ribosomal protein L33 [Enterococcus faecalis V583] # 1 49 1 49 49 107 100 1e-22 MRVNITLECTSCKERNYLTNKNKRNNPDRLEKQKYCPRERKVTLHRETK >gi|307679026|gb|GL456771.1| GENE 17 12640 - 14778 2514 712 aa, chain - ## HITS:1 COG:SP1673 KEGG:ns NR:ns ## COG: SP1673 COG0768 # Protein_GI_number: 15901508 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Streptococcus pneumoniae TIGR4 # 27 710 9 677 680 535 42.0 1e-152 MKKNSFIDKIKKTDAAAKSQRGRKPHIPFRLNLLFFVIFTLFVSLIVRLGYLQIVEGEEF NKKITANSSLQITTPSPRGQIYDSQGKVLVSNKANLAITYTRGKNIEGKDILPIANKVNE LINVPVDPNLTDRDKKDYWLANPENLKAAQSRLTDQDKEDEKGNKITDEGTLYAKAVEKV TPEEIAFDDRTLQAVTIFKRMNAASQMNTVFIKNEGVTEGEIATIGEHTAEISGVSTGTD WTRDYSQSGALRSLLGTVSTEKQGLPAEEVDEYLKKGYARNDRVGTSYLEKQYEDVLQGK KAKSEVVLDNNGKIVSQTPISKGEKGSNLKLTIDSNFQNKVDEILQRNYSQIVKTIGPYS ENAYVVAMNPQTGAILAMSGVSHDLQTGEVTPNPLGPILNFEVPGSVVKAGTLTAGYEAK VLQGNDTLLDEPIILAGTNPKASWWNSGGRNAQMQLTAEQALEYSSNAYMMKVVFKLMGV NYYPNMVFPYEIGDDKVFKELRNAYAEYGMGIKTGIDLPGESPGYVNKDFKDPAEAPKGG NLLDLSFGQYDNYTPLQLAQYVSTVANNGIRVQPHVVEGIYGNDENGALGKILKEIEPKV LNKVNISEDQIGILQQGFYNVVNGTSQFTTAPGLKSDKFSIAAKTGTAETQATDANGVVH TTVNSNLVAYAPYENPEIAISVVLPHLNDEESKPNQTIAKEVLEAYMEMYKK >gi|307679026|gb|GL456771.1| GENE 18 14943 - 16880 2663 645 aa, chain - ## HITS:1 COG:SPy0517 KEGG:ns NR:ns ## COG: SPy0517 COG0441 # Protein_GI_number: 15674621 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Threonyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 3 645 2 642 647 986 74.0 0 MSIHITFPDGAVKPFDSGITTFDVAKSISNSLAKKALAGKFNGVLIDLDRPIVEDGSLEI VTPDHEDALGILRHSSAHLMANALRRLFPNIKFGVGPAIDSGFYYDTDNGESPVTAEDLP AIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLPEDEIITVYDQGDFVDL CRGVHVPSTGRIQVFKLLSVAGAYWRGNSDNHMMQRIYGTAFFDKKDLKEFIKMREEAKE RDHRKLGKELDLFMVSQEVGSGLPFWLPKGATIRRTIERYIVDKEISLGYQHVYTPIMAD VELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDIHSYRELPIRIAEL GMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTLELMVAVYADFNITDYRF RLSYRDPNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDVQVKTAL GMEETLSTIQLDFLLPERFDLTYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAF PTWLAPIQATIIPVSVEAHSEYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPY QLVVGDKEMEDATVNVRRYGSKETSVEDLSIFIDSMAAEVHNYSR >gi|307679026|gb|GL456771.1| GENE 19 17277 - 17456 292 59 aa, chain - ## HITS:1 COG:L168282 KEGG:ns NR:ns ## COG: L168282 COG1942 # Protein_GI_number: 15672556 # Func_class: R General function prediction only # Function: Uncharacterized protein, 4-oxalocrotonate tautomerase homolog # Organism: Lactococcus lactis # 1 59 1 59 61 65 59.0 3e-11 MPFVHVELIEGRTEEQLTNMVKDITEAVSKNAGAPKENIHVIVNELKKDRYAQGGEWKK >gi|307679026|gb|GL456771.1| GENE 20 17575 - 18285 898 236 aa, chain - ## HITS:1 COG:BS_yodJ KEGG:ns NR:ns ## COG: BS_yodJ COG1876 # Protein_GI_number: 16079020 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Bacillus subtilis # 58 231 87 267 273 109 38.0 5e-24 MKFKVTIGVAILGLFIVGMAVKQVAEKKIVSIGNEQALSLEEEEKMSSPEEGDQSWKLLL VNQTHQIPEDYQIQLKKLPNKQAVDKRIYPALNRMFKDAKRQGFYLEVTSSYRTNEEQKE IMAEKVQAFQDQGFSEQEAIETAESWVAVPRTSEHEVGLAVDINAQSKRSTDEEVYAWLA KNAYKYGFILRYPSDKVEITGVSYEPWHYRYVGKKAALEIQKASLTLEEYLAENNN >gi|307679026|gb|GL456771.1| GENE 21 18383 - 19495 919 370 aa, chain - ## HITS:1 COG:BH1809 KEGG:ns NR:ns ## COG: BH1809 COG0642 # Protein_GI_number: 15614372 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus halodurans # 125 367 106 345 351 152 36.0 1e-36 MTEKKKTGKQQFKERMIKQLLTKFLFFSLGILALSAVLYFFSNFLFGLRRWGMEDPLYLL AKGIEENYVYLISLVILGGSVIILFRIWLQSINQLTEVLEATGKLYQNSEEPIALSANLM EFDKELNQIRQEVNLRQQQAKEAEQRKNDLIVYLAHDLKTPLTSVIGYLTLLHDELEIST QLREKYLAISLEKAEHLEELINEFFEIARFNLSNIELEPTSVRLDRMLNQVSYEFLPMLK QKQLTIETDFTEALSIHLDVDKMQRVFDNLVQNAINYSYAGTTISLSTKVDNENQRVNIY FTNHGPTVPPEKLARIFEQFFRLDTARQTNRGGAGLGLAVAKKIVELHGGVLSAESENEK TTFMISLSIL >gi|307679026|gb|GL456771.1| GENE 22 19488 - 20192 557 234 aa, chain - ## HITS:1 COG:BH1808 KEGG:ns NR:ns ## COG: BH1808 COG0745 # Protein_GI_number: 15614371 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus halodurans # 5 234 6 230 231 213 48.0 2e-55 MAERILLVDDEQEIADLLEVYLTSDGYEVEKFYRGKPALESMANNQFDLAVLDVMLPDID GFQMVKKAREKYFFPIILLTAKIEDIDKITGLTLGADDYITKPFNPLEVVARIKTQLRRF RKYNSQASLQQETEGTEIDIHGLVINKIHHTSKLYGEDIFLTPLEFSILWYLAERQGEVV PAEILFEEIWGEKYLENNGNTVMAHIGRLREKLKEPPRKPKFIKTVWGVGYKID >gi|307679026|gb|GL456771.1| GENE 23 20291 - 21736 1573 481 aa, chain - ## HITS:1 COG:CAC0747 KEGG:ns NR:ns ## COG: CAC0747 COG1376 # Protein_GI_number: 15894034 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 6 460 1 465 466 114 24.0 5e-25 MKKEEMQMRNTRRQKSGKNNKKKVIITSLVGLALVAGGSYVYFQSHFLPTTKVNGVSVGW LNVNAAEEKLAQVNQTEEVVVQTGAKEEKIQLPKKYQLDQKFLKDHLHSSKVKLPLNEAF KKELEAKLAILSFPEGKPSKNASIRRGNGTFEIVPEEQGTVVDTQRLNQQIIADVEAGKG NYQYNAKDFYKAPEITKEDQTLKATLTTLNNKLNKTITVDINGEKVAFDKTQIQNVLNDD GTINKEKLTTWVTQLETTYGSANQPVLFTDVHGTTRRFKNNGSYGWSIDGAKTQELLVNA LNSQEQTNAITAPLVGDTKENSKIANNYIEIDLKDQKMYCFIDGKKIVTTDVITGRYNKG TATVPGFHTILYRTTDVNLEGQMLDGSRYSVPVKYWMPLLSQGGVVTQIGIHDSDHKLDK YGDKEAFKTDAGSNGCINTPGTEVSKIFDVSYDGMPVIIYGHIYDDAPGEFDKPVDYGEE V >gi|307679026|gb|GL456771.1| GENE 24 21883 - 22746 769 287 aa, chain - ## HITS:1 COG:no KEGG:EF2861 NR:ns ## KEGG: EF2861 # Name: aadK # Def: aminoglycoside 6-adenylyltransferase # Organism: E.faecalis # Pathway: not_defined # 1 287 1 287 287 574 99.0 1e-162 MRTEEEMFQLIMDVAKQEEHIRAVGMVGSRTNVKAPKDSFQDFDIVYIVEPCAEFFETAT WIAKFGQPLIMQRPKEMTLFPTEPKTRETFLMLFEDGQRIDLTLCPLAEKDNWHEGDSLA IILLDKDENLPPLPVASDKNYTVTVPNQQQFNDCCNEFWWVSTYVVKGLCRNELFYAVTH LYEYCQQELLRLLSWQAAWQEPEPISVGKQFKYLKNYVTPDTMDQLASLLDFSSKEACWN SLIKTQAFFDVVAQDFAKMAQFTYHLQEAKKVTEYTNSLRLKDLQGK >gi|307679026|gb|GL456771.1| GENE 25 22868 - 23449 611 193 aa, chain + ## HITS:1 COG:lin2536 KEGG:ns NR:ns ## COG: lin2536 COG1434 # Protein_GI_number: 16801598 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 11 192 11 188 189 157 44.0 1e-38 MHWLKITSLSIVSFGFCILLILGLLIFTGKNTQPTDKPDAILILGARVLGTSKETALPSR VLQARLDVAIPYIKQHPETPVIVSGGQGANEPATEAAVMKQYLLNKGVPEKQILLENRAT RTKENIVNSQKLLYFKRLVIVTSDFHMYRSQLLAKRAGISNVSGITAASSFPKDIKNFGR ELFSLGYALLFDW >gi|307679026|gb|GL456771.1| GENE 26 23607 - 24551 1212 314 aa, chain + ## HITS:1 COG:no KEGG:EF2863 NR:ns ## KEGG: EF2863 # Name: not_defined # Def: endo-beta-N-acetylglucosaminidase # Organism: E.faecalis # Pathway: not_defined # 1 314 1 314 314 595 99.0 1e-169 MGHQLSTHFFNKKTGIISTFLSLILLVGGLLFALPAFEVQAASTVTPKTVMYVEVNNHDF NNVGKYTLAGTNQPAFDMGIIFAANINYDTVNKKPYLYLNERVQQTLNEAETQIRPVQAR GTKVLLSILGNHEGAGFANFPTYESADAFAAQLEQVVNTYHLDGIDFDDEYAEYGKNGTS QPNNSSFIWLLQALRNRLGNDKLITFYNIGPAAANSSANPQMSSLIDYAWNPYYSTWNPP QIAGMPASRLGASAVEVGVNQNLAAQYAKRTKAEQYGIYLMYNLPGKDSSAYISAATQEL YGRKTNYSPTVPTP >gi|307679026|gb|GL456771.1| GENE 27 24831 - 25649 614 272 aa, chain - ## HITS:1 COG:no KEGG:EF2864 NR:ns ## KEGG: EF2864 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 272 1 272 272 425 95.0 1e-117 MLAFFVGLAVLSLTACREPKEKKVTASTEASSKVEETNEKTSETIDKTNEQASSSVESNE SVKNEEPTADGNNSQLTVADLDTTAINAGDFTTLVGTWKNGKGESLIIHPDGSTNTGGMI TKDSPTDESRPITSLSIRWGPTGAALLLYKIGVENPNGDQSDKTKPRLLITQDSGNYPAE EYYYRSSEEEIQDQNEEAKIIENQEQAEACIRSTLTDAENDDTNLGFFGMNGNDFFFRAQ SKQMVANGGTGTVGFYRVSPQGAVRITDARGN >gi|307679026|gb|GL456771.1| GENE 28 25896 - 26615 1091 239 aa, chain - ## HITS:1 COG:lin0388 KEGG:ns NR:ns ## COG: lin0388 COG0217 # Protein_GI_number: 16799465 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 239 1 239 239 367 79.0 1e-101 MGRKWANIKEKKAAKDANNSRVYAKFGIEIYVAAKSGDPDPHANQKLRFVIERAKTYNVP KHIIDRAIEKAKGSADEQYSELRYEGFGPNGSMVIVDALTNNVNRTAADVRAAFGKNGGN MGVSGAVSYMFDNTGIIGFAGDDADEILEYLMEKDIDVRDVVEEDGQIIVYTEPEDFHHA QEALKEKGIEEFTVTELEMVPQNEVTLEGDDLANFEKMLDVLEDLEDVQKVHHNVDLPE >gi|307679026|gb|GL456771.1| GENE 29 26702 - 27880 790 392 aa, chain - ## HITS:1 COG:BS_ylbM KEGG:ns NR:ns ## COG: BS_ylbM COG1323 # Protein_GI_number: 16078570 # Func_class: R General function prediction only # Function: Predicted nucleotidyltransferase # Organism: Bacillus subtilis # 1 391 1 408 415 307 39.0 3e-83 MKACGIIVEYNPFHNGHRYHAQQARQQSGAEVVIAIMSGNFLQRGEPALLDKWARAEEAL QNGVDLVIELPTAWSVQSADYFAKGGIKLLQALQCESLCFGTDSTSAIDYAAFGQFVQEN QSLIDQTFHALTDKQLSYPQKMTAVFRQVYPESRFDFSSPNHILGMSYAKENATYPTPMT LYPIARKQAGFHDATISGKVASATAIRQSVFQQEITQVLPTVPSITAQHLQTQTMISWEN YWPFLKYKIVQSSLEELQAIYQMTEGLEYRLKDQIQAAGSFHELMERMKTKRYTWTRLQR LATYILLNMTKEEVETVWQDSYLHVLGFTPKGQAYLKETKAQIQLPVISKVSKENRAMLS LDIRANQLYQMGDSSLKEQNFGRFPLRFSPDT >gi|307679026|gb|GL456771.1| GENE 30 27970 - 28710 902 246 aa, chain - ## HITS:1 COG:L28696 KEGG:ns NR:ns ## COG: L28696 COG0500 # Protein_GI_number: 15672211 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Lactococcus lactis # 3 245 4 244 244 274 56.0 1e-73 MAYETFAFVYDEVMDESLYQKWLDFSNRHLPQGTQQILEMACGTGALAVDFAKSGYDVTA LDLSEEMLMIASERAFEEEVPVQFVQGNMLDLSEVGQYQAITCFSDSLCYMANRQEVQQV FDEVYQALEEEGTFIFDVHSTYKIDSVFPEYSYHYQTEEFAFLWDSYAGEKEHSIEHFLT FFVKEQETDEHFVRYDELHQERTYSLDNYLRMLESAGFMNVKVYADFTDEAPTETSERWF FVCQRD >gi|307679026|gb|GL456771.1| GENE 31 28712 - 28861 145 49 aa, chain - ## HITS:1 COG:lin1521 KEGG:ns NR:ns ## COG: lin1521 COG0799 # Protein_GI_number: 16800589 # Func_class: S Function unknown # Function: Uncharacterized homolog of plant Iojap protein # Organism: Listeria innocua # 1 46 69 114 118 71 67.0 4e-13 MEGKEGGKWILIDLGDVIVHVFQSSERAFYNLEKLWSDAPMVDLSAWVD >gi|307679026|gb|GL456771.1| GENE 32 29097 - 29687 961 196 aa, chain - ## HITS:1 COG:SPy0309 KEGG:ns NR:ns ## COG: SPy0309 COG1713 # Protein_GI_number: 15674476 # Func_class: H Coenzyme transport and metabolism # Function: Predicted HD superfamily hydrolase involved in NAD metabolism # Organism: Streptococcus pyogenes M1 GAS # 6 191 5 190 197 178 48.0 5e-45 MSWITNYDAAQRELLMQKVQMQMSERRFRHVLGVEETAVALAAKYGADEAKASIAALTHD YAKERPNDEFELIIRRDGFDLALLNYGNEIWHGLVGADIVQRELAIDDEEILQAIRVHTT GAAKMSLLDKIIYVADYIEPGRDFPGVKEAREIALVDLDAAVAYETKHTLLHLIEQEHKI YPKTLETYNQWVVNQK >gi|307679026|gb|GL456771.1| GENE 33 29665 - 30324 647 219 aa, chain - ## HITS:1 COG:SP1747 KEGG:ns NR:ns ## COG: SP1747 COG1057 # Protein_GI_number: 15901579 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid mononucleotide adenylyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 17 211 15 209 209 246 62.0 2e-65 MGEKRQARQGADVLLQEEPLRFQTRKQVGLLGGNFNPVHLAHLVMADQVQNQLGLDKVYL MPTYLPPHVDEKKTISSEHRLAMLELAVADNPCLDIEPIELIRKGKSYTYDTMKALKEAN PDTDYYFIIGGDMVEYLPKWHRIDDLLHLVQFVGIRRPNYPTESTYPIIWVDVPQMAISS TLIRQKVKSGCSTRYLLPENVINYIQEKGLYQDELDNKL >gi|307679026|gb|GL456771.1| GENE 34 30342 - 30653 286 103 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15901580|ref|NP_346184.1| hypothetical protein SP_1748 [Streptococcus pneumoniae TIGR4] # 1 103 1 103 103 114 58 8e-25 MKLRGKQKRYLRSQAHHLQPIFQVGKGGLNDAMITQIDEALEKRELIKITLLQNTDEVAE EVAEELTAAIHCDVVQIIGRVLVLFKPSSKEKYQKISAAVKEI >gi|307679026|gb|GL456771.1| GENE 35 30677 - 31786 1418 369 aa, chain - ## HITS:1 COG:SPy0306 KEGG:ns NR:ns ## COG: SPy0306 COG1161 # Protein_GI_number: 15674473 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pyogenes M1 GAS # 3 369 2 372 372 519 66.0 1e-147 MTEAIHCIGCGAIIQTENPHELGYTPKTAFEKGMETGEVYCQRCFRLRHYNDIQDVQLTD DDFLRLLNGLGTEDALIVNVVDIFDFNGSLIPGLHRFIGDNPVLLVGNKVDILPKSLKKP KMVQWMRERAHEAGLRPVDVLLTSGKKPQEMQELLDTIEKYREGRDVYVVGVTNVGKSTL INQIIQQTVGVQDVITTSQFPGTTLDKIEIPLDDGHFLIDTPGIIHRHQMAHYLGKKDLK IIAPQKEIKPKVYQLNAEQTLFLGGLARFDYVQGAKSSFIAYVSNDLNLHRTKTATADAF YEKHVGGLLQPPRADEVAEFPELVRFEFSVKEKTDIVFAGLGWITVTEPGVVAGWAPKGV DVLRRKALI >gi|307679026|gb|GL456771.1| GENE 36 31783 - 32310 632 175 aa, chain - ## HITS:1 COG:SPy0305 KEGG:ns NR:ns ## COG: SPy0305 COG2179 # Protein_GI_number: 15674472 # Func_class: R General function prediction only # Function: Predicted hydrolase of the HAD superfamily # Organism: Streptococcus pyogenes M1 GAS # 5 174 25 194 194 189 52.0 2e-48 MFSKYKPTWMIDAIYKITPAQLKKLGIKAVLTDLDNTLIAWNNPDGTEELKTWLLEMKNA GITVLVVSNNKDSRIKRVVEKFDLDYVARALKPTARGFKLAEKKLGLKPSEMLMVGDQIM TDIRGANAAGIRNVLVQPIVDTDGWNTRINRFFERKIMKYLSKKHPEMTWRGGLE >gi|307679026|gb|GL456771.1| GENE 37 32532 - 33320 1017 262 aa, chain - ## HITS:1 COG:SPy1743 KEGG:ns NR:ns ## COG: SPy1743 COG0825 # Protein_GI_number: 15675592 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase alpha subunit # Organism: Streptococcus pyogenes M1 GAS # 13 262 11 256 256 324 70.0 8e-89 MEKKTANDVVTLARDQDRLTTLEYIEAIFEDFLEFHGDRYFADDLAVVGGVATLQGKPVT VIGIQKGRNLPENIERNFGSPNPEGYRKALRLMKQAEKFNRPVITFVNTAGAYCGIGAEE RGEGEAIAQNLLEMSDLKVPIISVIIGEGGSGGALALAVADEVWMLEHTIYAVLSPEGFA SILWKDGSRAKEAAELMKITATELKELAIVDKVIPEVMNGQPLEQAKINRMLQKAFISKL TELAKLDTETLLEKRYQRFRKY >gi|307679026|gb|GL456771.1| GENE 38 33322 - 34188 801 288 aa, chain - ## HITS:1 COG:SP0426 KEGG:ns NR:ns ## COG: SP0426 COG0777 # Protein_GI_number: 15900345 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase beta subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 282 1 283 288 406 68.0 1e-113 MALFKKKNYIRINPNRADANDASKKPSVPDNMWAKCPSCKRTLYTKEMGAEKICPHCGYS FRIGAWERLAITVDEKSFHNWDSELVTKDPLNFPGYLEKIEKMQEKTGLDEAVLTGEATI EGQAVAIGIMDANFIMGSMGTIVGEKITRLFERATEKHLPVVIFTASGGARMQEGIFSLM QMAKISAALQRHNKAGLLYLTVLTDPTTGGVTASFAMDGDIILAEPQSLIGFAGRRVIEQ TIRQELPDDFQKAEFLLEHGFVDQIVPRNLLRQRLSDLLRLHSLEGWR >gi|307679026|gb|GL456771.1| GENE 39 34244 - 35614 1614 456 aa, chain - ## HITS:1 COG:SP0425 KEGG:ns NR:ns ## COG: SP0425 COG0439 # Protein_GI_number: 15900344 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxylase # Organism: Streptococcus pneumoniae TIGR4 # 1 451 1 452 455 660 73.0 0 MFSKVLIANRGEIAVRIIRACRELGVQTVAVYSEADQEALHTQLADEAICIGPAKATDSY LNVQAVLSAAIVTNAEAIHPGFGFLSENSQFASMCEECNITFIGPKAETIDAMGNKINAR QLMQKAKVPVIPGSDGVIDSVEEALTIAEEIGYPVMLKAAAGGGGKGIRKVLSKEELPKH FTSAQQEAKAAFGNDDMYLEKIIYPARHIEVQILGDQYGHVIHLGERDCSLQRNNQKVLE ESPSIAISEEKRQMLGETAVRAAQAVHYENAGTIEFLMDPAGDFYFMEMNTRIQVEHPVT EMVTGIDLVKAQLEIASGEPLGYTQEDVILTGHAIECRINAENPAFNFAPSPGKIQNLLL PSGGMGLRVDSAMYSGYSIPPYYDSMIAKVIVHGENRFDALMKMQRALNEIVTEGIITNA EFQLDLITHDNVLTGDYDTSFLQETFLPNWEPESNH >gi|307679026|gb|GL456771.1| GENE 40 35622 - 36047 603 141 aa, chain - ## HITS:1 COG:CAC3571 KEGG:ns NR:ns ## COG: CAC3571 COG0764 # Protein_GI_number: 15896805 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases # Organism: Clostridium acetobutylicum # 1 140 1 140 141 168 60.0 2e-42 MKLTITEIQEILPHRYPFLLLDSVEEVIPGERVVAKKNVTVNEQVFQGHFPGNPVLPGVL IIESLAQAGAVALLSMPEFKGKTAYFGGLDKAKFRQKVTPGDTLILEVELLKVRASAGMG KGVAKVNGKKVAEAELTFMIG >gi|307679026|gb|GL456771.1| GENE 41 36051 - 36539 640 162 aa, chain - ## HITS:1 COG:SP0423 KEGG:ns NR:ns ## COG: SP0423 COG0511 # Protein_GI_number: 15900342 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxyl carrier protein # Organism: Streptococcus pneumoniae TIGR4 # 1 158 1 160 161 108 45.0 3e-24 MQLEEVKALLTQFDQSTLTEFDLREGSFELYMNKNTVSGRSAVEPVAQPQETPVAASGVS VPVETVSVVEETPTNTPTTNEKTEEITSPIVGIVYLQPAPDKENFVKVGDTVKTGDVVCI VEAMKLMNEITATVDGVITEILVNNEDVVEFGQPLFRVAKGE >gi|307679026|gb|GL456771.1| GENE 42 36541 - 37776 1466 411 aa, chain - ## HITS:1 COG:SP0422 KEGG:ns NR:ns ## COG: SP0422 COG0304 # Protein_GI_number: 15900341 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Streptococcus pneumoniae TIGR4 # 1 411 3 410 411 475 58.0 1e-134 MNRVVITGYGVTSPIGNEPETFLESLKTGKNGIGPISKFDVSETGVTLAAEVKDFPMEKY FVKKDGKRMDKFSLFGIYAALEAMAMSGLDTSQLDVDRFGVMVGSGIGGLETIQNQVIRM HDKGPERVAPLFIPMAIGNMVAGNIALRVGAKGICTSTVTACASATHSIGEAFRNIKHGY SDVIIAGGAEAPITEIGISGFASLTALTKATDPEKASIPFDKERSGFVMGEGAGVFILES LDHALERGATILGEVVGYGANCDAYHMTSPTPDGSGAAKAMVLAMEEAGISPEKIGYINA HGTSTQANDSAESKAIELALGDAAKTAYVSSTKSMTGHLLGAAGGIEGIATLNALQHQFI PPTINVENQDEAITVNVVLNESKEHKFDYALSNSLGFGGHNAVICLKRWED >gi|307679026|gb|GL456771.1| GENE 43 37795 - 38532 214 245 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 6 239 4 238 242 87 28 2e-16 MELTGKNVFITGSTRGIGKAVALAFAKEGANIVLNGRSEITPEQRQEIEAFGVKCIGLSG DISDFDAAGEMIQATVDQLGSIDILVNNAGITNDKLLLRMTKEDFNACLDINLVGTFNMT QQAVKRMMKQRSGRIINMASVSGLMGNVGQANYAASKAGVVGFTKSVAREVAPRGITCNA IAPGFIQTEMTDVLSEKVKTQMNAQIPLQTFGQVEDVAATAIFLAKSPYITGQVVNVDGG LVMHG >gi|307679026|gb|GL456771.1| GENE 44 38536 - 39465 1122 309 aa, chain - ## HITS:1 COG:SP0420 KEGG:ns NR:ns ## COG: SP0420 COG0331 # Protein_GI_number: 15900339 # Func_class: I Lipid transport and metabolism # Function: (acyl-carrier-protein) S-malonyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 2 303 3 304 306 345 61.0 5e-95 MKTAILFSGQGAQYQGMGEELYHQEAIVRETFDEASHILGYEMAELCFTENERLNETEYT QPAILTVSVAFYRLLQQKGLTPDVVAGLSLGEYSALVASGALRFSEAVALVQKRGQYMTE AAPQGTGKMVAVMNAEREVIEKACQEASAFGIVAPANYNTPQQIVIGGEVAAVDQAMTLL KEAGVKRMIPLNVSGPFHTALLQPASKKLAQDLAKLNFQTMQIPVISNTTAEIMPQEAIQ ALLEKQVMSAVRFEDSIETMKAMNVGTMIEVGPGKTLTGFVKKIDKTIEMHRVEDVATLT ETLTALTGR >gi|307679026|gb|GL456771.1| GENE 45 39498 - 40454 1051 318 aa, chain - ## HITS:1 COG:SP0419 KEGG:ns NR:ns ## COG: SP0419 COG2070 # Protein_GI_number: 15900338 # Func_class: R General function prediction only # Function: Dioxygenases related to 2-nitropropane dioxygenase # Organism: Streptococcus pneumoniae TIGR4 # 1 317 1 317 324 394 68.0 1e-109 MNQQLCELLGINYPIFQGGMAWVADASLASAVSNAGGLGIIAGGNAPKEVVKKEIKKVKE LTEQPFGVNIMLLSPFADEIVDLVCEEQVPVVTTGAGNPAKYMARFKEHNIKVIPVVPSV ALAKRMEKIGADAVIFEGMEAGGHIGKLTTMSGLPQIVDAVSIPVIAAGGIGDGRGMAAA FMLGAEAVQLGTRFLIAKECNVHPDYKQKVLKARDLDAVITCQHFGHPVRTLKNKLTAQY NQLEKQELQKEVPDLEMFEKIGQGALRKAVVDGDMDYGSVMAGQIAGLIKKEETAQEIID SLMSECKAIVHKMNQRWG >gi|307679026|gb|GL456771.1| GENE 46 40591 - 40818 532 75 aa, chain - ## HITS:1 COG:no KEGG:EF2884 NR:ns ## KEGG: EF2884 # Name: acpP # Def: acyl carrier protein # Organism: E.faecalis # Pathway: not_defined # 1 75 1 75 75 83 100.0 3e-15 MVFEKIQAIIVEELGKDAEEVQLTTNIQEELDADSLDLFQIINEIEDEFDVKIETEDGIQ TVQDLVTYVEKQQAN >gi|307679026|gb|GL456771.1| GENE 47 40871 - 41836 1101 321 aa, chain - ## HITS:1 COG:SP0417 KEGG:ns NR:ns ## COG: SP0417 COG0332 # Protein_GI_number: 15900336 # Func_class: I Lipid transport and metabolism # Function: 3-oxoacyl-[acyl-carrier-protein] synthase III # Organism: Streptococcus pneumoniae TIGR4 # 4 321 3 324 324 366 57.0 1e-101 MKNYARISCTSRYVPENCVTNHQLSEMMDTSDEWIHSRTGISERRIVTQENTSDLCHQVA KQLLEKSGKQASEIDFILVATVTPDFNMPSVACQVQGAIGATEAFAFDISAACSGFVYAL SMAEKLVLSGRYQTGLVIGGETFSKMLDWTDRSTAVLFGDGAAGVLIEEAETPHFLNEKL QADGQRWAALTSGYTINESPFYQGHEQASKTLQMEGRSIFDFAIKDVSQNILSLVTDETV DYLLLHQANVRIIDKIARKTKISREKFLTNMDKYGNTSAASIPILLDEAVENGTLILGSQ QRVVLTGFGGGLTWGSLLLTL >gi|307679026|gb|GL456771.1| GENE 48 41852 - 42292 523 146 aa, chain - ## HITS:1 COG:CAC3579 KEGG:ns NR:ns ## COG: CAC3579 COG1846 # Protein_GI_number: 15896813 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Clostridium acetobutylicum # 1 144 1 144 154 156 59.0 1e-38 MEPNLETVNDYLVSVFNDILTIEESELKKSQFNDLSITEMHTIEAIGMYKKKTSSEVAKE LSITVGTLTVAINNLVKKGYVERLRSEDDRRVVKLGLTKKGKLLFRVHQHFHREMVKNIL KGMEQEEEQALLRALKNLHDFLQEYK >gi|307679026|gb|GL456771.1| GENE 49 42682 - 42912 309 76 aa, chain - ## HITS:1 COG:no KEGG:EF2888 NR:ns ## KEGG: EF2888 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 76 1 76 76 121 100.0 8e-27 MKHSQLVAIIKRLEAMIEAADNEVQVRRFEREGVEKCIVSFDKSTETFELTESDTHQSYQ FDNIDIVAMEIYDLIQ >gi|307679026|gb|GL456771.1| GENE 50 43013 - 43903 1216 296 aa, chain - ## HITS:1 COG:L81616 KEGG:ns NR:ns ## COG: L81616 COG2084 # Protein_GI_number: 15674197 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases # Organism: Lactococcus lactis # 1 292 1 292 293 369 63.0 1e-102 MSKIGFIGTGVMGKSIIRNMMKNNLSVNVYNRTKSKTDDLVAEGAVWYDTPKAIAEASDI IFTMVGFPSDVEGVYFNETGIFQADLTGKIVVDLTTSTPTLAEKIAKKAAEVGAHALDAP VSGGDLGAKNGTLTIMVGGDQESYDTVLPIFKTFGKTFMLHGSAGKGQHTKMANQLMIAG TMTGLTEMLVYANATGLTLEKVLETVGGGSAANWSLSNYGPRILKEDYTPGFFVKHFIKD LKIALDEAKKLDLPLPATQKATELYESLADKGFENDGTQALIKLWWTDGKQPTNKN >gi|307679026|gb|GL456771.1| GENE 51 43999 - 45198 1338 399 aa, chain - ## HITS:1 COG:L190226 KEGG:ns NR:ns ## COG: L190226 COG0438 # Protein_GI_number: 15674120 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Lactococcus lactis # 1 386 1 386 446 433 57.0 1e-121 MKIGFFTDTYFPQVSGVATSIKTLKDELEKHGHEVYIFTTTDPNATDFEEDVIRMPSVPF VSFKDRRVVVRGMWYAYLIAKELELDLIHTHTEFGAGILGKMVGKKMKIPVIHTYHTMYE DYLHYIAKGKVVRPSHVKFFSRVFTNHTTGVVCPSERVIEKLRDYGVTAPMRIIPTGIEI DKFLRPDITEEMIAGMRQQLGIEEQQIMLLSLSRISYEKNIQAIIQGLPQIIEKLPQTRL VIVGNGPYLEDLKELAEELEVSEYVQFTGEVPNEEVAIYYKAADYFVSASTSETQGLTYT EAMAAGVQCVAEGNAYLNNLFDHESLGKTFKTDSDFAPTLIDYIQANIKMDQTILDEKLF EISSTNFGNKMIEFYQDTLIYFDQLQMEKENADSIKKLK >gi|307679026|gb|GL456771.1| GENE 52 45245 - 46249 1253 334 aa, chain - ## HITS:1 COG:L189090 KEGG:ns NR:ns ## COG: L189090 COG0438 # Protein_GI_number: 15674119 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Lactococcus lactis # 1 333 1 330 332 374 55.0 1e-103 MKILLYFEGEKILAKSGIGRALDHQKRALSEVGIEYTLDADCSDYDILHINTYGVNSHRM VRKARKLGKKVIYHAHSTEEDFRNSFIGSNQLAPLVKKYLISLYSKADHLITPTPYSKTL LEGYGIRVPISAISNGIDLSRFYPSEEKEQKFREYFKIDEEKKVIICVGLFFERKGITDF IEVARQLPEYQFIWFGDTPMYSIPKNIRQLVKEDHPENVIFPGYIKGDVIEGAYAAANLF FFPSREETEGIVVLEALASQQQVLVRDIPVYQGWLVANENCYMGHSIEEFKKYIEGLLEG KIPSTREAGYQVAEQRSIKQIGYELKEVYETVLS Prediction of potential genes in microbial genomes Time: Tue Jul 5 18:40:30 2011 Seq name: gi|307679025|gb|GL456772.1| Enterococcus faecalis TX0312 genomic scaffold Scfld47, whole genome shotgun sequence Length of sequence - 35663 bp Number of predicted genes - 30, with homology - 30 Number of transcription units - 13, operones - 9 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 2681 1756 ## EF3252 hypothetical protein 2 1 Op 2 . - CDS 2668 - 3009 320 ## EF3076 cell wall surface anchor family protein - Prom 3229 - 3288 6.3 - Term 3291 - 3339 13.6 3 2 Op 1 1/0.333 - CDS 3417 - 4364 1051 ## COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase 4 2 Op 2 1/0.333 - CDS 4378 - 5445 1370 ## COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis - Prom 5487 - 5546 6.2 - Term 5582 - 5636 9.4 5 3 Tu 1 . - CDS 5700 - 6629 1187 ## COG4939 Major membrane immunogen, membrane-anchored lipoprotein - Prom 6684 - 6743 6.3 + Prom 6691 - 6750 6.3 6 4 Tu 1 . + CDS 6907 - 8853 2217 ## COG1252 NADH dehydrogenase, FAD-containing subunit + Term 8928 - 8979 12.2 + Prom 8931 - 8990 5.4 7 5 Op 1 3/0.000 + CDS 9071 - 9493 502 ## COG5341 Uncharacterized protein conserved in bacteria 8 5 Op 2 2/0.000 + CDS 9505 - 10062 583 ## COG4769 Predicted membrane protein 9 5 Op 3 . + CDS 10100 - 11086 1092 ## COG0142 Geranylgeranyl pyrophosphate synthase + Term 11091 - 11134 9.9 - Term 11921 - 11985 22.3 10 6 Op 1 . - CDS 11997 - 12788 922 ## COG0294 Dihydropteroate synthase and related enzymes 11 6 Op 2 . - CDS 12781 - 13374 212 ## PROTEIN SUPPORTED gi|162456259|ref|YP_001618626.1| putative ribosomal protein 12 6 Op 3 2/0.000 - CDS 13378 - 13938 707 ## COG0302 GTP cyclohydrolase I 13 6 Op 4 17/0.000 - CDS 13941 - 14426 572 ## COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase 14 6 Op 5 . - CDS 14427 - 14789 460 ## COG1539 Dihydroneopterin aldolase - Prom 14908 - 14967 13.4 15 7 Op 1 . - CDS 14984 - 16333 461 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 16 7 Op 2 . - CDS 16419 - 16817 609 ## EF3271 hypothetical protein 17 7 Op 3 . - CDS 16840 - 17979 1046 ## COG2856 Predicted Zn peptidase 18 7 Op 4 . - CDS 17957 - 18622 665 ## EF3273 hypothetical protein - Prom 18664 - 18723 10.9 - Term 18759 - 18799 -0.9 19 8 Op 1 5/0.000 - CDS 18885 - 20438 2030 ## COG0145 N-methylhydantoinase A/acetone carboxylase, beta subunit 20 8 Op 2 2/0.000 - CDS 20439 - 21533 1469 ## COG3535 Uncharacterized conserved protein 21 8 Op 3 1/0.333 - CDS 21553 - 22821 1675 ## COG1457 Purine-cytosine permease and related proteins - Prom 22843 - 22902 11.0 - Term 23372 - 23402 1.3 22 9 Op 1 . - CDS 23509 - 25071 1849 ## COG2508 Regulator of polyketide synthase expression 23 9 Op 2 13/0.000 - CDS 25095 - 26342 1645 ## COG0826 Collagenase and related proteases 24 9 Op 3 . - CDS 26370 - 27290 1204 ## COG0826 Collagenase and related proteases - Prom 27333 - 27392 3.3 - Term 27389 - 27433 6.1 25 10 Tu 1 . - CDS 27471 - 28505 861 ## COG1289 Predicted membrane protein - Prom 28546 - 28605 4.0 - Term 28574 - 28629 15.7 26 11 Op 1 3/0.000 - CDS 28639 - 31134 2492 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 27 11 Op 2 . - CDS 31137 - 31604 358 ## PROTEIN SUPPORTED gi|163764774|ref|ZP_02171828.1| ribosomal protein L14 - Prom 31642 - 31701 7.4 - Term 31701 - 31751 0.5 28 12 Op 1 . - CDS 31909 - 33096 1181 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases 29 12 Op 2 . - CDS 33116 - 34423 1496 ## COG1455 Phosphotransferase system cellobiose-specific component IIC - Prom 34640 - 34699 6.5 + Prom 34489 - 34548 6.8 30 13 Tu 1 . + CDS 34578 - 35426 739 ## COG1737 Transcriptional regulators + Term 35441 - 35473 4.2 - TRNA 35472 - 35545 86.8 # Pro TGG 0 0 Predicted protein(s) >gi|307679025|gb|GL456772.1| GENE 1 2 - 2681 1756 893 aa, chain - ## HITS:1 COG:no KEGG:EF3252 NR:ns ## KEGG: EF3252 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 893 1 878 1265 643 48.0 0 MKQTKWQRLATIGLCSSLVINAFSGVTAVAETITIESSPTVASSAKEATSASSATPASTE SSQETTETSREEVTQETEKPEVVEKISDDKEKTVISDYLNKGAKTIPEINKISPKATYNF PKVNYQFGFVDEAGNLMNPAPFSILFDYARGDRTTVPVKWTVISANEKATDSADNLKNMV VPAVSLAQPAGGAIYSVPSNFRLTIPKYYSSISIYNSDGKINPKYPVPIVKQYDSGVINN WIDEFHALNLTKDEAGYYKMYDTSVDGHGYPLLMQRYVTPPGKISHNVYTYFSGPVYYHL INRKVTENFVDDNGTKITPPTGFTQGKQTVIDSDPYTFKQSGTLPETYKASNGKTYKFKG WYKGKTKPNTLTATKAPSYAVTYDDNDDLNVVYEEIEAFDFPALTYQFGFVGEDGKLANP ADINITYDYKTSAYRGTGGGADDTVSFGTIATNQSATTVGNLKNVTMPATSIARPTETGY NGDAYANFSIKLPRYYQSLNLYDKTGKINPSYPLPAYTRKYSVRYDDQILPEASVIAFLR LTQKPDQSYAPYESYSVVDPSVKYPEFLQRVIYSTDMVSGYANYTTFSSPVYYHLTNRKV TENFVDANGTKITPPTGFTQGKQTVINSDPYTFKQSGTLPDTYTTGGKTYKFKGWYKGKT KPNTLTTTKAPSYAVTYDDNDDLNVVYEEETVTTLYPSMNVNFVDEKGVGFTPTLTFGGK YRVRRTSDLLDIDLYDVTSKSKGNGQYTISANYGMMPLSPELLKIYGNNIAVNGRNQLHF RFNQFSITNQLKYVDSIALDTTKTTYKVTRYDYTPNASTIFDVNQPPIIEDANVGGLDKF TSTNGYFVQDASTLLYMDISSYMNSIRMFGFNTTNTINSMAVYTVTRKQVTEN >gi|307679025|gb|GL456772.1| GENE 2 2668 - 3009 320 113 aa, chain - ## HITS:1 COG:no KEGG:EF3076 NR:ns ## KEGG: EF3076 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 113 8 120 120 172 88.0 5e-42 MIVCLLSSPSFFINVEASDGGSSSVGIEFYQNPRTPAPKDAPPKTDAPAADPKEPDGPPQ GDQRSGGSTQTTTTGSQLPRTGSKSQENLSILGLALIGLAGMVHRKKGRHEAN >gi|307679025|gb|GL456772.1| GENE 3 3417 - 4364 1051 315 aa, chain - ## HITS:1 COG:L112353 KEGG:ns NR:ns ## COG: L112353 COG1575 # Protein_GI_number: 15673645 # Func_class: H Coenzyme transport and metabolism # Function: 1,4-dihydroxy-2-naphthoate octaprenyltransferase # Organism: Lactococcus lactis # 1 313 1 313 319 303 54.0 3e-82 MSLNVFLKVVEIQTKLASLFPFIIGVLFSMTYFGEVQWSNTLVFFIGMVVFDMATTAINN YMDFKKAKSDVYKYEENIIGQSGVSPQLVRNMIFAMIAFTAVVGAYLTVQTGWLFLVLGG ICCFIGIFYTYGPIPLSRMPLGEIFSGFTMGLGIFVLAVYLNVVTNPPFYLTVDFASGAF RLDGNLWAVLAIVVASLPLVCSIANIMLANNLRDLDTDIENHRYTLVYYIGRPAGIVLFQ VLALAGYLVILFGFISGIYQWPVLITFATLPVIWKNIQTFKQELPQPKSFRHSIKNLMVF NGTYALGLLISALLG >gi|307679025|gb|GL456772.1| GENE 4 4378 - 5445 1370 355 aa, chain - ## HITS:1 COG:lin2785 KEGG:ns NR:ns ## COG: lin2785 COG1477 # Protein_GI_number: 16801846 # Func_class: H Coenzyme transport and metabolism # Function: Membrane-associated lipoprotein involved in thiamine biosynthesis # Organism: Listeria innocua # 3 340 2 348 360 376 56.0 1e-104 MKKKLLLMVSVLAVLFVAAACSSKPEAKINTEPYSDRQTMLGTYVQIRIYDDGKEDVLPK AFARVKELGDKITVNQPGSEIDEINQEAGVKPVKVSDDLYPLLKKAYEYSKDSRGGFDMA IGPITSMWHIGFDDARKPSQAEIDQALKLVDYTKVKFNDKEQTVYLEEKGMQLDLGAIAK GFITDEVVKVLKDNGVTTAIVDLGGNVYVLGHSPRGKDMDWTVGIQDPNKARNTVLGQVK ESNKTLVTSGIYERYLKVDGKTYHHLFDRETGYPFDNDIAGVTIITDKSIDGDGLSTAVF SMGVKKGLEYVESLKGTDAIFVTKDDKVYISKDIEGNFEIGKDSGYTMGNRADLK >gi|307679025|gb|GL456772.1| GENE 5 5700 - 6629 1187 309 aa, chain - ## HITS:1 COG:lin2786 KEGG:ns NR:ns ## COG: lin2786 COG4939 # Protein_GI_number: 16801847 # Func_class: S Function unknown # Function: Major membrane immunogen, membrane-anchored lipoprotein # Organism: Listeria innocua # 1 307 1 296 299 221 50.0 1e-57 MKVNKFVKGFAAIALFSLVLAGCGADKKDNTTNSSSAASSETKKSTESSAPAKKVAGGDL KDGTYKLEEKNEKNGYRAVFEMTVKDGKITESKYDNINADGKSKTEDTKYEESMKAKSGV GPKEYIKQLNDSFVKAQSASGVEVVTGATHSSESFQNYAQQLIQAAQAGNTDTIEIDNGA TLKDGTYSLKEKNDSNGYHTTFSMTVKDGKVTESNYDNVNADGKSKKDDTEYESKMKDVA GVGPKEYIETLNKEFVKAMGEEDGSPAGVEVVTGATHSTHSFINYAQQLVNAAEKGDTTE IVVDNIVTK >gi|307679025|gb|GL456772.1| GENE 6 6907 - 8853 2217 648 aa, chain + ## HITS:1 COG:L41335 KEGG:ns NR:ns ## COG: L41335 COG1252 # Protein_GI_number: 15672811 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase, FAD-containing subunit # Organism: Lactococcus lactis # 1 648 1 666 667 717 57.0 0 MTKQNIVVVGAGYAGVSATKFLAKKFKKDTDVTITLIDRHSYHTMMTELHEVAGGRVEPE AIQYDLQRLFSRKKNVKLVTDTVTGIDKENKVVKTLAGSYPFDQLILGMGGEPNDFGTPG VKENGFTLWSFDDAVKIRHHIEATVAKAAIEPDAEVRKAMLTFVVCGSGFTGIEMVGELI DWKDRLAKDAKIDPDEITLMVVEAMPTILNMLSRNDAAKAERYLEKKNVQLLLNSPIVEV AADHIKLKDGSEVPTHTLIWTAGVKATSDAADFGLEAARGSRLVANEYMQAKGYEDKNIY IIGDLVYYEETPNTPTPQIVQAAEQTGHTAAANIVADIKGGEKHAFKGNYQGFMVSIGAK WGVANLFDKIHLSGFLAIIMKHIVNLKYFFDIRSGYYMFQYIMHEIFHIKDDRSVARGHT SRYGNVLWSVPLRVFYGMVWLVESMKKIVGNGDYLKPSTWFGDGSWFTDKVVFPFPWLQE QVTTGASQATETATTAASGAADAAASGGADAATQAAHFGLSYAYGETPMQVFDHMPKWFE SVMKFMMPNQEVALFMQKFMTIVEVCIALALIAGLFTWLSSAATIGLTIAFCLSGMFYWV NIWFIFVAFALMNGSGRAVGLDRWVIPWIQRKLGKAWYGTPKARYGGK >gi|307679025|gb|GL456772.1| GENE 7 9071 - 9493 502 140 aa, chain + ## HITS:1 COG:L178600 KEGG:ns NR:ns ## COG: L178600 COG5341 # Protein_GI_number: 15673322 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 6 140 10 133 135 102 45.0 2e-22 MTIKEFIKKSRLKTWDVIIIAILVLGSFLPLVVFAMQNRGQEAATYQAVLKVDNKVIKVF DLKKDGPHYTYKYEAKDGDYNLIEVDGDRIRVKEANCADLVDVRRGWISKPGETPIACLP HNLFITVEASDGSEDGSLIY >gi|307679025|gb|GL456772.1| GENE 8 9505 - 10062 583 185 aa, chain + ## HITS:1 COG:lin2789 KEGG:ns NR:ns ## COG: lin2789 COG4769 # Protein_GI_number: 16801850 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 1 169 1 169 180 207 63.0 1e-53 MSKLHKNIYIAMLVAQGVIIGLIENMIPYPFAFAPGSKLGLANLITIIAIFTMRKRDSFF LVCLRLILTTLLGGTLSTFFYSASGALLSYFGMLLVKQLGPKRVSIIGISAVGGFLHNVG QLLTTSFFAHSWAPMLYLPFLSLFGLLSGIAIGIAANYLLQHVQTLRKFQLNYEQTTKHK WSQFF >gi|307679025|gb|GL456772.1| GENE 9 10100 - 11086 1092 328 aa, chain + ## HITS:1 COG:lin2790 KEGG:ns NR:ns ## COG: lin2790 COG0142 # Protein_GI_number: 16801851 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Listeria innocua # 1 327 1 325 326 335 48.0 8e-92 MNIHPMWNTYPTLSKELTTTLRLMEQAVQIDNQEIQAAVHDMIHSGGKLLRPAYQLLFSY FGEQRDPKKATALAASIELLHTATLVHDDIVDEADTRRGLPTLRSRFGNSTAVYTGDYLF VCCFKLLSDYSSSLKSIQLNSRSMEKVLTGELGQMDNRYNFEVTIDQYLKNISGKTAELF ALSCFVGAYESGTSQRFAKRCGEIGENIGLAFQIIDDILDYTQTADAIGKPVLEDVRQGV YSLPLIYALEANREVLLPLLMKKETLTDEETQEIYRLVHELGGVEKAQQLATHYTEKALK EISKLPETKAQAKEQLYEITQTILTREN >gi|307679025|gb|GL456772.1| GENE 10 11997 - 12788 922 263 aa, chain - ## HITS:1 COG:slr2026 KEGG:ns NR:ns ## COG: slr2026 COG0294 # Protein_GI_number: 16329867 # Func_class: H Coenzyme transport and metabolism # Function: Dihydropteroate synthase and related enzymes # Organism: Synechocystis # 1 259 21 287 289 198 41.0 7e-51 MIDLKKNYQIMGIVNTTPDSFSDGGSYTTVDVAYQHALHLLEAGADILDIGGQSTRPGYE EVSPQVEADRVLPLIKKIRETSLAPISVDTYYPEVAEAAIQAGATMINDIKGLDTPGMAE VLAQYPEVQVVIMHSRKHQSLSLKEELHQFYTEKIEQCQKYGLSLEKICFDPGIGFHKTV AENLQLLKDPNAFRYQDYPLLYGVSRKRTIGALTNEPEPANRDFGSAAASLYAAQQGVEI LRVHNVQGLKQTFDVWRALSEKE >gi|307679025|gb|GL456772.1| GENE 11 12781 - 13374 212 197 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|162456259|ref|YP_001618626.1| putative ribosomal protein [Sorangium cellulosum 'So ce 56'] # 1 186 6 196 207 86 29 2e-16 MEIIVGTNNQGKLKEMQSGLKDPAIQLVSYRKYTTSQEQPAETGTTYAENAYLKARFFQQ LIGRPVLGDDGGLTLTAFPDLLGIHTSRFFHSANPEEQNRELLHLFEGQQSTRELTLSAT LVYVLDDDKLLQTEATLTGELVEPRGTGGYGFDPIIYLPDRGKTLAELSTSERMKISPRM RALRKMIQQIKEQCDND >gi|307679025|gb|GL456772.1| GENE 12 13378 - 13938 707 186 aa, chain - ## HITS:1 COG:BS_mtrA KEGG:ns NR:ns ## COG: BS_mtrA COG0302 # Protein_GI_number: 16079335 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase I # Organism: Bacillus subtilis # 1 174 1 174 190 203 60.0 1e-52 MEQEKQAQIEQAVTTILEAVGEDTQRAGLIDTPKRVAKMYAEVFSGLTEPEFDDYKLFDS LNEGEMVLVKDIAFYSMCEHHLLPFYGKVHVAYLPEGGKVLGLSKLPRLVEHCAKRPTVQ EDLTVTIARKLQENIPVKGIAVAIEAEHMCMTMRGVKTPQSSTKTFQFTGLFKEQEWKNQ FLMEIR >gi|307679025|gb|GL456772.1| GENE 13 13941 - 14426 572 161 aa, chain - ## HITS:1 COG:SMc00465 KEGG:ns NR:ns ## COG: SMc00465 COG0801 # Protein_GI_number: 15965562 # Func_class: H Coenzyme transport and metabolism # Function: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase # Organism: Sinorhizobium meliloti # 5 148 12 155 174 120 41.0 2e-27 MIGYVALGSNVGDPYANLVKARNYLNEDPQIQVVASSKLYETDPYGYTDQDDFLNAVLKI DTSYTAEELLAVTQGIEQAMKRKKLIHWGPRIIDIDILLLGGQSVTLPHLQVPHQELTKR SFVLIPLSDVYAEEQLLGAPIATWIQRSGNQEEVRVSEKEW >gi|307679025|gb|GL456772.1| GENE 14 14427 - 14789 460 120 aa, chain - ## HITS:1 COG:lin0257 KEGG:ns NR:ns ## COG: lin0257 COG1539 # Protein_GI_number: 16799334 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroneopterin aldolase # Organism: Listeria innocua # 1 119 1 118 124 85 39.0 2e-17 MDKIRINNLKFFTKNGVLAEEKRLGQQVEIDLEMQLSLAEAGRTDDVTQTVNYAEVNELI AQRVNNHSYDLIEGLASAILDDISADYQEQLNKIIIKIRKYSVPMPGLFDNIEIEMEREV >gi|307679025|gb|GL456772.1| GENE 15 14984 - 16333 461 449 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 1 443 1 442 458 182 28 3e-45 MKTYDYIVIGGGSGGIASANRAGMHGANVLLIEGNEIGGTCVNVGCVPKKVMWQASSMME MMERDTAGYGFDVEIKNFSFKQLVENREKYIDFLHGAYNRGLDSNNIERIHGYATFTGEQ TIEVNGTEYTAPHILIATGGRPKKLGIPGEEYALDSNGFFALEEMPKRVVFVGAGYIAAE LAGTLHGLGAETHWAFRHERPLRSFDDMLSEKVVERYQEMGMQIHPNATPAKIEKTAQNE YVITFENGESITTDAVIFGTGRQPNTDQLGLENTKVALDEKGYVKVDKFQNTTQNGIYAV GDVIGKIDLTPVAIAAGRRLSERLFNGQTDLYLDYNLVPTVVFTHPPVGTIGLTEKAALE EYGEDQVKIYRSSFTPMYFALGEYRQKCDMKLICVGKEEKIVGLHGIGIGVDEMLQGFAV AIKMGATKADFDNTVAIHPTGSEEFVTMR >gi|307679025|gb|GL456772.1| GENE 16 16419 - 16817 609 132 aa, chain - ## HITS:1 COG:no KEGG:EF3271 NR:ns ## KEGG: EF3271 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 132 1 132 132 268 99.0 5e-71 MAKLFAYQIGQNPRIQTDLLVDPQLFEDEHGCMGAVGFGLADCVQTGMFTDIEVIKRYLH EATYVFINGDFDRLSYLEIGIALSLGKTLYVITMNPNVTKEDLGIPFDNATIEFLSPSAF TERIHKTEAAEN >gi|307679025|gb|GL456772.1| GENE 17 16840 - 17979 1046 379 aa, chain - ## HITS:1 COG:MT2073_2 KEGG:ns NR:ns ## COG: MT2073_2 COG2856 # Protein_GI_number: 15841500 # Func_class: E Amino acid transport and metabolism # Function: Predicted Zn peptidase # Organism: Mycobacterium tuberculosis CDC1551 # 139 323 65 237 279 102 30.0 2e-21 MNERLIFNPKQLTSARIARGLTMKELAEKAELSRQMISNYESGKTIPKADSILKLISVLQ FPRSFFSADTFELYSGATFFRSRSAATKKVRDMQKERLKYVQEVYKVLATYVNFPKVCLP ELIEKSIYEITEEEIVKKAEELRKIWGLDLISPVPNLIQLAEQNGVIISEANMSNPTLDA VSRWMIGRPFIMLTDNHESAVRRRFNVAHELGHILLHNGVESIHEYSQTELKNIIEYQAN LFAAHFLLPSAAFSDSLLSISLEYYIDLKKYWKVSLQSMIQKTYTLALINDDQRLYLNKR IAKNKWKTKEPYDEQLTIEQPEVFQKVYHMILEHQVIPASQLNQAFKLPKEEIEKILGTA IQTEQDKTEIVLELLRSNE >gi|307679025|gb|GL456772.1| GENE 18 17957 - 18622 665 221 aa, chain - ## HITS:1 COG:no KEGG:EF3273 NR:ns ## KEGG: EF3273 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 65 221 1 157 157 318 99.0 8e-86 MSILKEHLKRNCDARMVGVLSLSIREAYRYLMELTERESIFQRAEMKKVWGHVRHGLVDV GLKQVLTSSAIPHEIADKASSRYVNGHTYLMIETKGAILTPAKVLSEASVPKKALFRNRG SLLNKQYNLFDKPEDLNEYYDANQPPFLLLTYGGSNHQLRFVRLGLPDIGVGRWIDQIDI TQAPVLLKNPEEVRKDLHLTFTSTADELIRRGLENEREVDF >gi|307679025|gb|GL456772.1| GENE 19 18885 - 20438 2030 517 aa, chain - ## HITS:1 COG:lin0475 KEGG:ns NR:ns ## COG: lin0475 COG0145 # Protein_GI_number: 16799551 # Func_class: E Amino acid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: N-methylhydantoinase A/acetone carboxylase, beta subunit # Organism: Listeria innocua # 1 516 1 515 516 725 74.0 0 MYKIGIDVGGTNTDAVILDHQLNLIHSVKVPTTDDIQTGIAGALNKVLAESAVDPTKVTH AMLGTTQCTNAIVERKKLAKVGVLRLGYPATASVLPYTAWPKDLVATLSETYALAHGGYE YDGQPLTALDEEELRGILASWRGEVEAIAVIGVFSSLKNDQELFVQALAKEVLGADVPVS CSSMIGSVGLIERENATILNAALHKVIKVTSEGFEQALEQEKIHHAQVYLCQNDGTLMSL TYAKQFPILTIACGSTNSIRGASYLAGLKDAVVLDVGGTTSDIGVLVDGFPRESSLAVDV GGVRTNFRMPDIVSIGVGGGSLVREQPDGSVTVGPDSVGYRITQEALVFGGTQLTTTDIA VRLGHAQVGDPSKVAHLDQTFAEKVYQKIGELVSEAIDRMKTSSADVTVVLVGGGSIIIP EELTGVKALIRNENGAVANAIGASIAQISGQYEQIYVYSKIQRDAALTDAQEKAVQQAEL AGAVPGTIELVEVEETPLAYHPENATRLRVKVVGNMY >gi|307679025|gb|GL456772.1| GENE 20 20439 - 21533 1469 364 aa, chain - ## HITS:1 COG:lin0474 KEGG:ns NR:ns ## COG: lin0474 COG3535 # Protein_GI_number: 16799550 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 364 1 363 366 565 76.0 1e-161 MRYLDAEAIENIATGAAFLGTGGGGDPYIGKMMALSAIEENGPVKLVSPEEIAAEDFFLP AAMMGAPSVAIEKFPKGDEFVRVFEKLGKYLDQETIAGTFPMEAGGVNSMIPIVVAAKLG IPLVDCDGMGRAFPELPMVTFHLNGMSATPMAITDEKGNIGIMETIDNTWTERLARVQTV EMGASALVSIYPATGKQLQDYGIHNIVTLSEEIGKVIRGTYADEQEKRQALVEVTDGFEL FQGKILDVEREVKGGFNLGRVKLSGLNSDAGSEAVVHFQNENLIAEKDGQVIAMTPDLIC MVDLETLTPVTTESLKYGKRVQVMGLKANAAWRTKKGIETVGPRYFGYEMDYQPLENLVA KEDK >gi|307679025|gb|GL456772.1| GENE 21 21553 - 22821 1675 422 aa, chain - ## HITS:1 COG:lin0473 KEGG:ns NR:ns ## COG: lin0473 COG1457 # Protein_GI_number: 16799549 # Func_class: F Nucleotide transport and metabolism # Function: Purine-cytosine permease and related proteins # Organism: Listeria innocua # 2 420 4 422 427 506 68.0 1e-143 MKLKNEQQQSWLSLAFVWAGAMISVPGLIIGGTLVAGMPLWEALLTGFIGYGIIVILMIL QGIQSSDLQEPSVKVASQVFGIQGSQKIISIILAIACLGWFGLQANVSGGAFTNFLKIYG IDLPVSLSSLIWGIIMLISALYGIKILKILNYFAVPVLVLVCLYGLVASLRNNGWEAVSQ YTPQTAGSFMSGLSMTVGSFALGAVIAGDYSQYVSSRKDVVKAATLGSLPTGLLMIGVGA VLTIASNTADITEVFMNLGFPVLGIIALILATWTTNAVNAFSGGLALINVFDIPKEKEKV AVGAAGAIGTLLAVVGILNYFTPIMSVLSAMVPPVAGVMIAAYWLINKGDRTKWQPTPGV NKLGVFSWLIGAAVGGIPVIMSFFPNAPQLPNQPLIGIVLSFVIYYFGAKRQQTNTESLE ME >gi|307679025|gb|GL456772.1| GENE 22 23509 - 25071 1849 520 aa, chain - ## HITS:1 COG:lin0472 KEGG:ns NR:ns ## COG: lin0472 COG2508 # Protein_GI_number: 16799548 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Listeria innocua # 1 517 1 524 531 323 35.0 7e-88 MSVRVNDLLKLPSLREATVLSGKNQLDTSVASLSFLEVSDMSLFSEKLHKTNEYHAGEIL IGSFCAIRHDVVKQCETIRHLHELGEVGLILYYVGIIVPKVAEEVIQLADSLGFILIQMP KNDPTLRYNEVIYEVMKLLVNKNKMASFATDLLEKVSLLPEQNRSVEMTLKILSDFLKVN IALTTYTNEIISTINWPRSTKLPLTKLLYQSQEKVALGETTYFITSQKLPQKDGQTLKLY FIREEEQLTSFEMNQAVEVVQMALNLWGKNYDEVSEYALVQAIINDESDKMYQLAKKLMI DISSVETMWLLPIWQQGQEIHAIQQDLKDFLRYYYQTTIVQQTENYLIVLLGNYLHKQPE ATISKEYLQATDYQDYLGEIILCPKVRNTTEVRVSYQTANQVAPFLKRVYPQRKVLSIAE IRTVQQMMTCLQAGEEAIQQRLAVIQPLLKESEQLMTLGTFLLDASSDFKECGERLFVHK NTVKYRIGKINEALGYDMTNAAEAYEVYLAMILYRLVTNE >gi|307679025|gb|GL456772.1| GENE 23 25095 - 26342 1645 415 aa, chain - ## HITS:1 COG:SP1429 KEGG:ns NR:ns ## COG: SP1429 COG0826 # Protein_GI_number: 15901282 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Streptococcus pneumoniae TIGR4 # 7 415 3 410 428 629 74.0 1e-180 MKVMTERTLKRPEVLAPAGTLEKLKVAIRYGADAVYIGGNAYGLRSRAGNFTPEEMAEGV AFAREHNAKVYVAANMVTHEGNQEGAGAFFRELRDIGISAVIVSDPALIEICATEAPGLP IHLSTQASATNYETLEFWKNEGLERVVLAREVSMEEVAAIRENTDIEIEAFIHGAMCISY SGRCTLSNHMSMRDANRGGCSQSCRWKYELFDMPFGTERRSKTSEGEVEEEFSMSAVDMS MIEHIPELIENGVDSFKIEGRMKSIHYVSTVANVYKKAVDSYMEDPENYVCQQEWIDELW KVAQRELATGFYYNTPSEDEQLFGERRKIPQYKFVGEVIAYNEKTQVATIRQRNLFSVGD EIEFYGPGFTHFHQTVKEMYNEDGEAIDRAPNPMMLLTMEVTQPVAVGDMIRKKK >gi|307679025|gb|GL456772.1| GENE 24 26370 - 27290 1204 306 aa, chain - ## HITS:1 COG:L54059 KEGG:ns NR:ns ## COG: L54059 COG0826 # Protein_GI_number: 15673973 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Lactococcus lactis # 1 306 1 307 307 358 56.0 9e-99 MIELIATAESVEQAVELLATGVDTLYIGEETFGLRLPVSFTRDEQREIVKRAHEMGKQVL VAVNGIMHPEKMKLVPEYLTFLKEINVDKITLGDPGIVFIMQRDGLEIPYVYDGETLVTS SRQINFWSKRGAIGAVLAREVPFEEMVAMEENLAVPAEILVYGATCIHQSKRPLIQNYYN YTKNDKGVTKDEGLFISEPKKPETHYSIYEDSHGTHIFANNDVNLMNELTNLYDHHYRTW KLDGLYTPGENFVAIARLFAEAKAALEAGTWSEDQAAHATAEIEKLHPTGRGLDNGFFDL SADAIK >gi|307679025|gb|GL456772.1| GENE 25 27471 - 28505 861 344 aa, chain - ## HITS:1 COG:Cj0557c KEGG:ns NR:ns ## COG: Cj0557c COG1289 # Protein_GI_number: 15791918 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Campylobacter jejuni # 20 328 29 337 361 98 27.0 2e-20 MEQSFFRELLHYQRPKDNPFRLVFAGLVMFSILFLGYINHQLLISSFGSLGIFTFLYYQP LPLKQLMTRLSVVGSYLFLGNLLGMLSTHIAWLIPIVVALVGFGGRFFFEVYDISKPGAF FGVMVTAMGASTSIPLAKIPFMSGCMLLGIGFSILFALVLHFTEKEISAPLAKRSLRERI YRHPEAPLDSIYYSFVLFFAVYISESLHLQNPYWLVVSCASILQGDNLRAIKQRNIQRIF GTTIGLVISAFLLNLALTTFESIVVITILFVTVEYFIRRNYGLAQFFTTPMALMLSLLVR QQYVITLIQFRFLGIVLGSLLGLAAAWLFTVVVTFYERKYHLNE >gi|307679025|gb|GL456772.1| GENE 26 28639 - 31134 2492 831 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 5 810 6 806 815 964 60 0.0 MDELFTESAKAVLAIAQEEAKYFRHQSVGSEHLLLALVLEPNGIAGKTLRQLNTDTEDIR EEIEHLSGYGTMQSPMGNNNLYLPYSPRAKQIFAYAGDEAKRLGAQKIGTEHLLLGLLRD EEILASRILVNLGLSLSKMRQLLLKKMGVSEPNGAQRRRNGQSKNAPQGTPTLDSLARDL TKLAREQSLDPVVGRGTEVRRLIQILSRRTKNNPVLVGEPGVGKTAIAEGLAQKIVNREV PEDMQGKRLMMLDMGALVAGTKYRGEFEDRLKKVVDEIYQDGQVILFIDELHTLIGAGGA EGAIDASNILKPALARGELQTIGATTLDEYQKYIEKDAALERRFARIQVAEPTPEEAEEI LKGLRSRYEKHHGVEITDEALHAAVQLSIRYLNDRQLPDKAIDLMDESAAKVRLDKADQP SEINELRTEISQLITEKEEAIQNQSFESAARIRQKEKQVMEKLEELIAVKEKSLSGYSTQ VTEEDVAGVVSQWTGVPLQQLEKKESERLMELETILHQRVVGQNEAVEAVSRAIRRARSG LKDPARPIGSFMFLGPTGVGKTELAKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSP PGYVGYEEGGQLTEKIRQRPYSVILLDEVEKAHPDVFNILLQVLDDGHLTDAKGRKVDFR NTILIMTSNLGATAIREEKHVGFNVKDISKNHELMQKRIMEELKKAFRPEFLNRIDETVV FHSLKQEEIHEIVKIMSQSVVKRMAEQEVKVKITPAAIEVIGKVGFDPEYGARPIRRALQ KEVEDRLSEALLSGQIQLGDKVTLGASKGKITLNVRAPKAPKTEAKELQTV >gi|307679025|gb|GL456772.1| GENE 27 31137 - 31604 358 155 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764774|ref|ZP_02171828.1| ribosomal protein L14 [Bacillus selenitireducens MLS10] # 4 154 2 154 158 142 47 3e-33 MSNQNTSDLIEAYLKKILEESNKIEIRRAEMANLFNCVPSQINYVINTRFTIQRGYAVES KRGGGGYIRIVKVQISDNDQLLKQMDQLIGATLTEKDALTFIQTLYEEEVITKKEGNLML AALSKSTLNGLGNHEDFLRAQIMRSFLERLSYEEE >gi|307679025|gb|GL456772.1| GENE 28 31909 - 33096 1181 395 aa, chain - ## HITS:1 COG:mll0856 KEGG:ns NR:ns ## COG: mll0856 COG0626 # Protein_GI_number: 13470999 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Mesorhizobium loti # 24 388 31 393 395 261 38.0 1e-69 MHVENDKNICCEVEKGMEKMYHPMVPELVQTSSFYFPTYEEFMAASIDEKNNYVYTRGTN PTTEILEKKIARLERGEKCKVFASGMGAISATLFTLLQQGDHVLMVNTIYGESVSFMQYL EKFGVSLTKVDVAETEELFQFVQENTKVIYFESPSSQKFELLDLEKITALAQKIGAYTVI DNTWASPLFQHPLCHNVDLVIHSCSKYIGGHSDIVAGAVIGKAALVDQIFEHGHQALGAV NSPFNSWLALRGIRTMPVRLAHQSQAIQTVLSALQKDPRISRLYHPFVGNQQQQALAEKY LTGYGSLFAIDLKDTDFERLKTFVNALTLVTIGVSWGGFESLALPVFKGNNLAAVQKRGL SPAHIRMYVGLEEPTSIIEDIQQALDQAYGEESLL >gi|307679025|gb|GL456772.1| GENE 29 33116 - 34423 1496 435 aa, chain - ## HITS:1 COG:SPy2050 KEGG:ns NR:ns ## COG: SPy2050 COG1455 # Protein_GI_number: 15675820 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Streptococcus pyogenes M1 GAS # 10 430 7 432 434 276 35.0 6e-74 MDKLTNWVEQTVVPKVSRITSLRYFQALRNGFFAIMPLTIIGSIFMLITDFPVAGYGDFM AGIFGAGWADMISPAYRATFNMMGIIFAGTMSYKLAESYEMDRLTSLILGIVAYVVVLPK TVTTESGEVVTKVLSFDWLGTQGVITAIIMSILSVELTRFCIKKKLVIKMPDSVPSMVSQ AFSALIPGIFVVAVALLINGIGLSFADSFPQLIYAVIQAPLQGLIGTPFAIIIVAGLNGL FWWFGIHPTVINSILYPILYANADKNQSLAELGQLTAQNGNFGTVQMLDQFATIGGAGCT IGLAIAMAIVGHSSRMKAMSKISFVPAFFNINEPLIFGLPVIFNPLLLIPIAVAPIVSVL IAFLSMKIGFMPMFTNIQAPWATPFLFSGFLVGKWQGAVTQVLAVAASVVIYYPFVKALD RQYQKEEAHEVPETL >gi|307679025|gb|GL456772.1| GENE 30 34578 - 35426 739 282 aa, chain + ## HITS:1 COG:BS_ybbH KEGG:ns NR:ns ## COG: BS_ybbH COG1737 # Protein_GI_number: 16077237 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 10 257 13 255 283 96 28.0 5e-20 MNLIECLEQKERYTYNEGLIIDFILSHTERVLHMSIYELAEATNSSTSTIVRLCKKTETS GFKEFKIRLSRDLEIHYQAIRNVDANMPFLAQDSDLLIAKKIAQLTTETVQSTQQLLTEA MLNKSIDLLLTAENILAVGVSNSYIRLTDFQTKLLRIQLFIHLIPYQAEQFYLAINATKN DVAILVSYSGNTAEIVNEARIFAEGGTPIIAITSDLNSQLAKYATVILPIPNVEHADFKV STFSSQLAIEYILNVLYSCIFSRNFDKNYTSQKNTPTSILKF Prediction of potential genes in microbial genomes Time: Tue Jul 5 18:41:43 2011 Seq name: gi|307679024|gb|GL456773.1| Enterococcus faecalis TX0312 genomic scaffold Scfld48, whole genome shotgun sequence Length of sequence - 166029 bp Number of predicted genes - 162, with homology - 162 Number of transcription units - 84, operones - 48 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 15 - 104 62.1 # Ser TGA 0 0 + TRNA 138 - 211 74.1 # Met CAT 0 0 + TRNA 260 - 333 80.1 # Asp GTC 0 0 + TRNA 339 - 411 75.8 # Phe GAA 0 0 + TRNA 426 - 496 71.8 # Gly TCC 0 0 + TRNA 510 - 583 92.9 # Ile GAT 0 0 + TRNA 594 - 681 62.7 # Ser GCT 0 0 + TRNA 697 - 768 70.2 # Glu TTC 0 0 2 1 Op 2 8/0.000 + CDS 1927 - 3822 2453 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 3 1 Op 3 . + CDS 3846 - 5276 1737 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase + Term 5299 - 5362 2.5 4 2 Op 1 . + CDS 5399 - 6865 1581 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 5 2 Op 2 . + CDS 6886 - 7704 1017 ## COG0406 Fructose-2,6-bisphosphatase + Term 7731 - 7786 18.4 + Prom 7754 - 7813 9.5 6 3 Tu 1 . + CDS 7842 - 8585 663 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) + Term 8589 - 8632 6.9 - Term 8529 - 8573 1.7 7 4 Tu 1 . - CDS 8603 - 9169 294 ## COG2169 Adenosine deaminase - Prom 9239 - 9298 6.2 + Prom 9223 - 9282 2.6 8 5 Op 1 . + CDS 9308 - 9799 546 ## COG0350 Methylated DNA-protein cysteine methyltransferase 9 5 Op 2 . + CDS 9812 - 10252 204 ## PROTEIN SUPPORTED gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) 10 5 Op 3 . + CDS 10336 - 11010 746 ## COG1418 Predicted HD superfamily hydrolase + Prom 11043 - 11102 5.1 11 6 Op 1 . + CDS 11153 - 12088 1239 ## COG0053 Predicted Co/Zn/Cd cation transporters 12 6 Op 2 . + CDS 12133 - 12531 423 ## EF0281 hypothetical protein + Term 12546 - 12604 4.1 - Term 12534 - 12590 8.3 13 7 Tu 1 . - CDS 12630 - 13382 1066 ## COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH) - Prom 13410 - 13469 7.8 14 8 Op 1 8/0.000 + CDS 13680 - 14918 1602 ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase 15 8 Op 2 . + CDS 14920 - 15354 742 ## COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases + Term 15366 - 15408 7.1 + Prom 15360 - 15419 7.1 16 9 Op 1 . + CDS 15446 - 16336 342 ## gi|255970899|ref|ZP_05421485.1| predicted protein + Prom 16341 - 16400 7.9 17 9 Op 2 . + CDS 16428 - 17363 1144 ## COG0167 Dihydroorotate dehydrogenase + Term 17364 - 17412 10.6 - Term 17360 - 17392 4.2 18 10 Tu 1 . - CDS 17401 - 18048 741 ## EF0286 fibronectin-binding protein, putative - Prom 18232 - 18291 6.3 + Prom 18315 - 18374 5.0 19 11 Tu 1 . + CDS 18403 - 18963 791 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) + Term 18968 - 19015 12.5 + Prom 19046 - 19105 4.1 20 12 Tu 1 . + CDS 19132 - 19269 150 ## EF0288 hypothetical protein + Term 19291 - 19336 10.6 + Prom 19278 - 19337 3.5 21 13 Op 1 8/0.000 + CDS 19359 - 20276 1214 ## COG0031 Cysteine synthase 22 13 Op 2 . + CDS 20290 - 21426 1580 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases + Term 21428 - 21474 10.1 - Term 21416 - 21461 13.7 23 14 Op 1 8/0.000 - CDS 21463 - 22893 1661 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 24 14 Op 2 1/0.094 - CDS 22920 - 24254 1357 ## COG1455 Phosphotransferase system cellobiose-specific component IIC - Prom 24326 - 24385 4.9 - Term 24367 - 24419 17.6 25 15 Tu 1 . - CDS 24428 - 25189 657 ## COG1737 Transcriptional regulators - Prom 25212 - 25271 8.8 + Prom 25229 - 25288 10.5 26 16 Tu 1 . + CDS 25436 - 25978 567 ## COG0262 Dihydrofolate reductase + Prom 25981 - 26040 2.1 27 17 Op 1 . + CDS 26110 - 27477 1273 ## COG0168 Trk-type K+ transport systems, membrane components 28 17 Op 2 . + CDS 27498 - 28661 1439 ## COG0475 Kef-type K+ transport systems, membrane components + Term 28711 - 28768 7.6 + Prom 28663 - 28722 5.5 29 18 Op 1 1/0.094 + CDS 28789 - 29229 407 ## COG3682 Predicted transcriptional regulator 30 18 Op 2 . + CDS 29245 - 31731 3017 ## COG2217 Cation transport ATPase 31 18 Op 3 . + CDS 31753 - 31959 268 ## EF0299 copper transport protein CopZ + Term 31968 - 32009 8.2 - Term 31948 - 32003 20.5 32 19 Op 1 . - CDS 32004 - 33374 1063 ## EF0300 hypothetical protein 33 19 Op 2 . - CDS 33374 - 33763 511 ## COG1725 Predicted transcriptional regulators - Prom 33789 - 33848 5.6 + Prom 33755 - 33814 6.5 34 20 Tu 1 . + CDS 33913 - 35241 1662 ## COG3579 Aminopeptidase C + Term 35246 - 35298 14.7 - Term 35306 - 35353 15.3 35 21 Op 1 4/0.031 - CDS 35357 - 35977 732 ## COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family 36 21 Op 2 . - CDS 35999 - 36973 1214 ## COG0346 Lactoylglutathione lyase and related lyases - Prom 37023 - 37082 8.9 37 22 Op 1 12/0.000 + CDS 37260 - 37595 427 ## COG2076 Membrane transporters of cations and cationic drugs 38 22 Op 2 . + CDS 37592 - 37903 552 ## COG2076 Membrane transporters of cations and cationic drugs - Term 37946 - 37988 5.0 39 23 Op 1 1/0.094 - CDS 37999 - 39045 1216 ## COG3469 Chitinase 40 23 Op 2 . - CDS 39088 - 39672 729 ## COG3397 Uncharacterized protein conserved in bacteria - Prom 39763 - 39822 7.3 + Prom 39841 - 39900 8.2 41 24 Op 1 . + CDS 39947 - 40681 874 ## COG3884 Acyl-ACP thioesterase 42 24 Op 2 . + CDS 40732 - 41565 842 ## COG1801 Uncharacterized conserved protein 43 24 Op 3 . + CDS 41582 - 42118 657 ## COG4696 Uncharacterized protein conserved in bacteria - Term 42098 - 42133 6.0 44 25 Tu 1 . - CDS 42141 - 43493 1641 ## COG0527 Aspartokinases - Prom 43524 - 43583 5.3 + Prom 43591 - 43650 8.0 45 26 Op 1 . + CDS 43680 - 44366 884 ## COG0637 Predicted phosphatase/phosphohexomutase + Prom 44382 - 44441 8.3 46 26 Op 2 . + CDS 44552 - 46288 2172 ## COG4477 Negative regulator of septation ring formation + Term 46305 - 46344 8.4 + Prom 46331 - 46390 7.0 47 27 Tu 1 . + CDS 46415 - 47560 1212 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes + Term 47561 - 47619 14.1 - Term 47551 - 47607 16.7 48 28 Op 1 2/0.062 - CDS 47613 - 48077 378 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 49 28 Op 2 40/0.000 - CDS 48074 - 48304 315 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 50 28 Op 3 . - CDS 48301 - 49782 1706 ## COG0642 Signal transduction histidine kinase - Prom 49928 - 49987 12.0 + Prom 49835 - 49894 9.0 51 29 Tu 1 . + CDS 49968 - 50945 1268 ## EF0374 putative lipoprotein + Term 50965 - 51019 14.6 + Prom 50981 - 51040 7.8 52 30 Tu 1 . + CDS 51130 - 52095 1232 ## EF0375 hypothetical protein + Term 52123 - 52162 6.2 + Prom 52166 - 52225 14.5 53 31 Tu 1 . + CDS 52314 - 53357 1119 ## EF0376 hypothetical protein + Term 53376 - 53421 7.1 + Prom 53424 - 53483 4.9 54 32 Op 1 . + CDS 53531 - 54334 987 ## COG0666 FOG: Ankyrin repeat 55 32 Op 2 . + CDS 54386 - 55597 1655 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases + Term 55598 - 55643 4.6 - Term 55581 - 55634 12.1 56 33 Op 1 . - CDS 55707 - 56126 346 ## COG3654 Prophage maintenance system killer protein 57 33 Op 2 . - CDS 56123 - 56386 309 ## EF0380 hypothetical protein - Term 56409 - 56450 1.0 58 34 Op 1 . - CDS 56463 - 57275 863 ## COG0657 Esterase/lipase 59 34 Op 2 . - CDS 57250 - 58842 1059 ## COG2508 Regulator of polyketide synthase expression - Prom 58958 - 59017 6.8 + Prom 58843 - 58902 6.7 60 35 Op 1 . + CDS 58965 - 61976 4113 ## COG0074 Succinyl-CoA synthetase, alpha subunit 61 35 Op 2 . + CDS 61969 - 62802 568 ## EF0384 hypothetical protein 62 35 Op 3 1/0.094 + CDS 62812 - 64065 1529 ## COG0477 Permeases of the major facilitator superfamily + Prom 64091 - 64150 2.2 63 36 Op 1 . + CDS 64200 - 65138 1248 ## COG0549 Carbamate kinase 64 36 Op 2 . + CDS 65145 - 66365 995 ## COG1301 Na+/H+-dicarboxylate symporters + Prom 66368 - 66427 1.6 65 37 Op 1 . + CDS 66455 - 67516 1287 ## COG2055 Malate/L-lactate dehydrogenases + Term 67517 - 67569 1.1 66 37 Op 2 . + CDS 67582 - 68937 1888 ## EF0389 hypothetical protein 67 37 Op 3 . + CDS 68962 - 70185 1925 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases + Term 70201 - 70249 13.6 + Prom 70378 - 70437 7.9 68 38 Tu 1 . + CDS 70633 - 72927 1701 ## EF0392 hypothetical protein 69 39 Tu 1 . + CDS 73384 - 74751 1686 ## COG3883 Uncharacterized protein conserved in bacteria + Term 74777 - 74812 5.1 + Prom 75079 - 75138 10.3 70 40 Tu 1 . + CDS 75159 - 76286 1500 ## COG0620 Methionine synthase II (cobalamin-independent) + Term 76292 - 76336 11.5 - Term 76267 - 76332 11.2 71 41 Op 1 . - CDS 76338 - 77522 1253 ## COG0628 Predicted permease 72 41 Op 2 . - CDS 77538 - 78053 531 ## EF0397 hypothetical protein - Prom 78078 - 78137 5.6 + Prom 78157 - 78216 6.3 73 42 Op 1 6/0.000 + CDS 78246 - 78932 782 ## COG3819 Predicted membrane protein 74 42 Op 2 3/0.031 + CDS 78929 - 79873 1125 ## COG3817 Predicted membrane protein 75 42 Op 3 . + CDS 79889 - 80530 893 ## COG2039 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) + Term 80561 - 80602 -0.4 + Prom 80936 - 80995 3.0 76 43 Tu 1 . + CDS 81042 - 82445 1670 ## COG1757 Na+/H+ antiporter + Term 82457 - 82519 12.1 + Prom 82500 - 82559 4.2 77 44 Op 1 1/0.094 + CDS 82597 - 83031 562 ## COG1846 Transcriptional regulators 78 44 Op 2 . + CDS 83036 - 83671 865 ## COG0778 Nitroreductase + Term 83773 - 83814 -0.6 79 45 Tu 1 . - CDS 83714 - 84547 699 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 84635 - 84694 11.4 + Prom 84624 - 84683 6.1 80 46 Op 1 4/0.031 + CDS 84731 - 86473 1449 ## COG2213 Phosphotransferase system, mannitol-specific IIBC component 81 46 Op 2 5/0.000 + CDS 86464 - 88497 1924 ## COG3711 Transcriptional antiterminator 82 46 Op 3 . + CDS 88508 - 88942 461 ## COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain + Term 89124 - 89178 11.1 83 47 Tu 1 . - CDS 89024 - 89293 138 ## gi|255970965|ref|ZP_05421551.1| LOW QUALITY PROTEIN: predicted protein + Prom 89308 - 89367 5.9 84 48 Op 1 . + CDS 89539 - 91311 2157 ## COG2213 Phosphotransferase system, mannitol-specific IIBC component 85 48 Op 2 15/0.000 + CDS 91326 - 91763 623 ## COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain 86 48 Op 3 . + CDS 91778 - 92932 1619 ## COG0246 Mannitol-1-phosphate/altronate dehydrogenases + Term 92979 - 93037 5.2 87 49 Op 1 . - CDS 93001 - 94116 969 ## COG0665 Glycine/D-amino acid oxidases (deaminating) - Term 94147 - 94179 1.1 88 49 Op 2 . - CDS 94195 - 94833 634 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases - Prom 94990 - 95049 8.8 + Prom 94871 - 94930 10.2 89 50 Op 1 24/0.000 + CDS 95178 - 96332 1554 ## COG0845 Membrane-fusion protein 90 50 Op 2 36/0.000 + CDS 96345 - 97052 261 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 91 50 Op 3 . + CDS 97049 - 98278 276 ## PROTEIN SUPPORTED gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 + Term 98350 - 98404 11.0 + Prom 98306 - 98365 3.3 92 51 Op 1 . + CDS 98412 - 98567 105 ## gi|307288791|ref|ZP_07568769.1| hypothetical protein HMPREF9505_02175 93 51 Op 2 . + CDS 98564 - 99685 808 ## Sez_1592 hypothetical protein + Term 99690 - 99737 6.2 - Term 99680 - 99722 7.2 94 52 Op 1 . - CDS 99728 - 100432 720 ## EF0419 hypothetical protein 95 52 Op 2 . - CDS 100432 - 101907 1828 ## COG0477 Permeases of the major facilitator superfamily - Prom 101949 - 102008 6.5 + Prom 101922 - 101981 8.9 96 53 Op 1 . + CDS 102050 - 102517 575 ## EF0421 MerR family transcriptional regulator + Prom 102569 - 102628 7.0 97 53 Op 2 . + CDS 102648 - 103400 927 ## COG1414 Transcriptional regulator + Term 103403 - 103468 19.4 + Prom 103449 - 103508 17.0 98 54 Op 1 8/0.000 + CDS 103561 - 104208 980 ## COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase 99 54 Op 2 . + CDS 104213 - 105220 989 ## COG0524 Sugar kinases, ribokinase family 100 54 Op 3 9/0.000 + CDS 105233 - 106072 1150 ## COG3717 5-keto 4-deoxyuronate isomerase 101 54 Op 4 1/0.094 + CDS 106094 - 106882 200 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 + Term 106887 - 106945 17.1 + Prom 107000 - 107059 4.4 102 55 Op 1 . + CDS 107112 - 108218 1155 ## COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins 103 55 Op 2 11/0.000 + CDS 108236 - 109246 589 ## PROTEIN SUPPORTED gi|90020579|ref|YP_526406.1| ribosomal protein L22 104 55 Op 3 11/0.000 + CDS 109261 - 109737 256 ## PROTEIN SUPPORTED gi|90020580|ref|YP_526407.1| ribosomal protein S3 105 55 Op 4 . + CDS 109773 - 111068 1089 ## PROTEIN SUPPORTED gi|90020581|ref|YP_526408.1| ribosomal protein L16 + Term 111181 - 111223 9.6 - Term 111168 - 111211 8.2 106 56 Tu 1 . - CDS 111216 - 112088 725 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 112189 - 112248 7.7 + Prom 112134 - 112193 8.8 107 57 Op 1 6/0.000 + CDS 112217 - 113719 1523 ## COG1070 Sugar (pentulose and hexulose) kinases 108 57 Op 2 5/0.000 + CDS 113716 - 115002 1395 ## COG4806 L-rhamnose isomerase 109 57 Op 3 4/0.031 + CDS 115030 - 115878 1171 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases 110 57 Op 4 . + CDS 115896 - 116186 282 ## COG3254 Uncharacterized conserved protein + Prom 116304 - 116363 3.9 111 58 Op 1 . + CDS 116396 - 117316 974 ## COG2207 AraC-type DNA-binding domain-containing proteins 112 58 Op 2 . + CDS 117318 - 118154 668 ## COG1082 Sugar phosphate isomerases/epimerases + Term 118169 - 118213 6.8 - Term 118201 - 118236 -0.5 113 59 Tu 1 . - CDS 118237 - 118437 367 ## EF0439 immunity protein PlnM, putative - Prom 118476 - 118535 5.5 - Term 118492 - 118531 5.2 114 60 Tu 1 . - CDS 118544 - 120025 1796 ## COG3104 Dipeptide/tripeptide permease - Prom 120057 - 120116 6.3 + Prom 120592 - 120651 7.0 115 61 Tu 1 . + CDS 120843 - 121442 859 ## EF0443 LysM domain-containing protein + Term 121488 - 121540 6.0 116 62 Tu 1 . - CDS 121512 - 121802 56 ## COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism - Prom 121925 - 121984 11.4 + Prom 121929 - 121988 7.0 117 63 Op 1 2/0.062 + CDS 122057 - 122872 1067 ## COG0447 Dihydroxynaphthoic acid synthase 118 63 Op 2 . + CDS 122877 - 124334 1232 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 119 63 Op 3 10/0.000 + CDS 124331 - 125698 1490 ## COG1169 Isochorismate synthase 120 63 Op 4 15/0.000 + CDS 125698 - 127431 1709 ## COG1165 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 121 63 Op 5 3/0.031 + CDS 127419 - 128243 855 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 122 63 Op 6 . + CDS 128244 - 129347 1088 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily + Term 129349 - 129420 9.4 - Term 129347 - 129399 13.1 123 64 Tu 1 . - CDS 129404 - 130102 753 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase - Prom 130129 - 130188 7.2 - Term 130194 - 130238 9.0 124 65 Tu 1 . - CDS 130354 - 131880 1572 ## COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases - Prom 131932 - 131991 6.3 + Prom 131987 - 132046 8.2 125 66 Tu 1 . + CDS 132101 - 132502 551 ## COG1764 Predicted redox protein, regulator of disulfide bond formation + Term 132548 - 132586 7.1 - Term 132501 - 132537 5.1 126 67 Tu 1 . - CDS 132580 - 133359 694 ## COG0730 Predicted permeases - Prom 133465 - 133524 8.9 + Prom 133424 - 133483 7.5 127 68 Op 1 13/0.000 + CDS 133521 - 134324 1054 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 128 68 Op 2 1/0.094 + CDS 134317 - 135135 1080 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 129 68 Op 3 . + CDS 135166 - 135642 730 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 130 68 Op 4 2/0.062 + CDS 135659 - 136510 551 ## COG1737 Transcriptional regulators 131 68 Op 5 . + CDS 136525 - 137415 1098 ## COG2103 Predicted sugar phosphate isomerase 132 68 Op 6 . + CDS 137428 - 138417 1010 ## COG1680 Beta-lactamase class C and other penicillin binding proteins 133 68 Op 7 . + CDS 138427 - 138846 633 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA + Term 138853 - 138887 5.3 - Term 138841 - 138875 4.5 134 69 Tu 1 . - CDS 138880 - 139689 832 ## EF0462 hypothetical protein - Prom 139841 - 139900 7.4 + Prom 139776 - 139835 5.8 135 70 Tu 1 . + CDS 139883 - 140473 737 ## PROTEIN SUPPORTED gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent + Term 140487 - 140526 8.6 + Prom 140476 - 140535 7.7 136 71 Op 1 . + CDS 140613 - 141593 1069 ## COG0253 Diaminopimelate epimerase + Prom 141605 - 141664 5.6 137 71 Op 2 . + CDS 141743 - 142951 1512 ## COG1316 Transcriptional regulator + Term 142968 - 143014 10.8 + Prom 142990 - 143049 9.1 138 72 Op 1 . + CDS 143081 - 143782 1080 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase + Term 143791 - 143851 20.1 + Prom 143797 - 143856 7.0 139 72 Op 2 . + CDS 143878 - 144579 1074 ## COG1285 Uncharacterized membrane protein + Term 144606 - 144645 5.1 + Prom 144650 - 144709 5.6 140 73 Op 1 8/0.000 + CDS 144738 - 145307 738 ## COG1704 Uncharacterized conserved protein 141 73 Op 2 . + CDS 145352 - 146638 1081 ## COG1512 Beta-propeller domains of methanol dehydrogenase type + Term 146641 - 146691 13.1 - Term 146634 - 146671 6.0 142 74 Op 1 24/0.000 - CDS 146678 - 147643 1142 ## COG0208 Ribonucleotide reductase, beta subunit - Prom 147750 - 147809 4.7 - Term 147792 - 147828 3.3 143 74 Op 2 18/0.000 - CDS 147844 - 150003 2218 ## COG0209 Ribonucleotide reductase, alpha subunit 144 74 Op 3 11/0.000 - CDS 149984 - 150361 240 ## COG1780 Protein involved in ribonucleotide reduction 145 74 Op 4 . - CDS 150363 - 150587 372 ## COG0695 Glutaredoxin and related proteins - Prom 150782 - 150841 7.1 + Prom 150849 - 150908 5.8 146 75 Op 1 22/0.000 + CDS 151101 - 151574 680 ## COG1918 Fe2+ transport system protein A 147 75 Op 2 . + CDS 151571 - 153721 2171 ## COG0370 Fe2+ transport system protein B 148 75 Op 3 . + CDS 153728 - 153865 222 ## EF0477 hypothetical protein + Term 154098 - 154157 6.1 - Term 154056 - 154085 -0.2 149 76 Op 1 . - CDS 154142 - 155311 974 ## COG0582 Integrase 150 76 Op 2 . - CDS 155355 - 155585 228 ## EF0480 excisionase, putative - Prom 155676 - 155735 76.5 + TRNA 155662 - 155734 81.5 # Lys CTT 0 0 - Term 155647 - 155706 19.5 151 77 Tu 1 . - CDS 155922 - 157238 790 ## COG3464 Transposase and inactivated derivatives - Prom 157267 - 157326 9.9 + Prom 157255 - 157314 5.9 152 78 Tu 1 . + CDS 157421 - 157675 176 ## COG3328 Transposase and inactivated derivatives + Prom 157847 - 157906 4.3 153 79 Tu 1 . + CDS 158003 - 158308 129 ## COG3328 Transposase and inactivated derivatives - Term 158567 - 158599 2.3 154 80 Op 1 1/0.094 - CDS 158613 - 159650 1029 ## COG3641 Predicted membrane protein, putative toxin regulator 155 80 Op 2 . - CDS 159676 - 160614 779 ## COG1893 Ketopantoate reductase - Prom 160661 - 160720 6.5 + Prom 161054 - 161113 8.2 156 81 Op 1 . + CDS 161139 - 161738 358 ## COG0582 Integrase 157 81 Op 2 . + CDS 161787 - 162086 405 ## NMC1958 hypothetical protein 158 81 Op 3 . + CDS 162162 - 162497 231 ## Lbuc_0635 filamentation induced by cAMP protein Fic + Prom 162536 - 162595 7.3 159 82 Tu 1 1/0.094 + CDS 162617 - 162724 148 ## COG3316 Transposase and inactivated derivatives + Prom 162744 - 162803 3.2 160 83 Tu 1 1/0.094 + CDS 162839 - 163219 344 ## COG3316 Transposase and inactivated derivatives + Term 163226 - 163261 0.2 + Prom 163421 - 163480 9.4 161 84 Op 1 3/0.031 + CDS 163522 - 164709 878 ## COG1004 Predicted UDP-glucose 6-dehydrogenase 162 84 Op 2 . + CDS 164773 - 165939 883 ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis Predicted protein(s) >gi|307679024|gb|GL456773.1| GENE 1 1011 - 1853 851 280 aa, chain + ## HITS:1 COG:BS_licT KEGG:ns NR:ns ## COG: BS_licT COG3711 # Protein_GI_number: 16080959 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus subtilis # 1 276 1 275 277 256 48.0 4e-68 MIIHKILNNNVVITLDDDKREQIVMGKGIAFKKRIGDWVPDESIDQVFYLANQETSLKFQ ELLGNIPLEMMKLSDDIIVYAKSTLKKSLNDTIYISLTDHLYTALERKKQGIAIKNLLLW DIKRFFPEEYEVGVNALKMVQKRVGMELSTDEAGFIALHLVNAEMEEEVGNIYELTKLMQ EITNIVKYYFKVSFDEDSVYFYRFSTHLKFFCYRLLHQREVVENDDEELYAVIKKKYLNA YRCVEKISLYLNENYDYQVSNEERLYLTIHIARIVQTTEQ >gi|307679024|gb|GL456773.1| GENE 2 1927 - 3822 2453 631 aa, chain + ## HITS:1 COG:lin0026_2 KEGG:ns NR:ns ## COG: lin0026_2 COG1263 # Protein_GI_number: 16799105 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Listeria innocua # 85 461 3 375 399 310 50.0 4e-84 MGKYHELAEKIVKNVGGQENINSLTHCITRLRFKLKDESQANDDVLKNMDGVVTVMKSGG QYQVVIGNHVPAVYEEVVSIAGLSGEREEEASSGNLFDRLIDILSGCFQPFLGALAAAGM VKGLNALLVFLKLYTATSGTYTMLNGIGDAIFYFMPVILGYTAAKKFRLHPMVGIVIGAA LCYPTIQGSALQTAFETTAGAGAAAPYNLFGLPAYDTFIGIPWVGANYTSSVVPIIFIIA FAAQVQKVFKRIIPEVVQTFLVPFFVLLIALPIGFLVIGPIVSMLTDLLSAGFTALMSFS PALYGLILGFFWQVLVIFGLHWSVVPLAIMQVTQEGSSQVLTGSFAASFAQTAVVLAMFF KLKDKKLKALCPPAIISGIFGVTEPAIYGITLPKKWPFIYSMIGGAVGGLYLMINNVTAY TMGGLGIFGVLNFINGDDASGMIQSFIAIAIAAVVGFGLTFFFWKDNTVEEEVIIDKTTI KKENITSPVKGRVLSLKNAEDPAFANGALGNGVVIEPTEGKVVAPFDGTIVTLFPTKHAL GLISDNGTELLIHIGIDTVQLEGEGFEAFVKQGDRVKKGQTLVTFDLEGIKKAGFSTQIP IVVTNTADYLDILEVGSNEVSTSDDLLTALI >gi|307679024|gb|GL456773.1| GENE 3 3846 - 5276 1737 476 aa, chain + ## HITS:1 COG:L121426 KEGG:ns NR:ns ## COG: L121426 COG2723 # Protein_GI_number: 15673653 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Lactococcus lactis # 1 476 1 476 477 787 76.0 0 MAFRKDFLWGGATAANQCEGGYNEGGRGLANVDLAPTGPDRFPVITGEKKMFNFDEEHFY PAQEAIDMYHRYKEDIALFGEMGFKTYRLSIAWSRIFPMGDETEPNEEGLKFYEDLFKEC HKYGIEPLVTITHFDCPMHLVEEYGAWRSRKLVGFYENLCRVIFNRYKGLVKYWLTFNEI NMILHAPFMGAGLYFEEGENKEQVKYQAAHHELLASAIATKIAHEVDPENQVGCMLAAGS NYAYTCKPEDVFAARQADRENYFFIDVQSRGEYPAYALKEMARKGIQIEMEEGDEELLKE HTVDFISFSYYSSRVTSTDPEINEQTAGNIFASVKNPYLKASEWGWQIDPLGLRITMNDL YDRYQKPLFIVENGLGAVDTPDENGYVVDDYRIDYLAAHIQAMKDAVEQDGVDLLGYTTW GCIDLVSAGTGEMKKRYGFIYVDRDNEGNGTLKRSKKKSFDWYKKVIATNGEDLSN >gi|307679024|gb|GL456773.1| GENE 4 5399 - 6865 1581 488 aa, chain + ## HITS:1 COG:lin0017 KEGG:ns NR:ns ## COG: lin0017 COG2723 # Protein_GI_number: 16799096 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Listeria innocua # 3 485 6 476 477 551 55.0 1e-156 MGFPENFLWGGATAANQYEGGYLSGGKGLSTLDAITGGSQTEPRRITYLTKEGQKASCTR DQALPEGAIGYIDEELYYPSHVATDFYHHYEEDIALFAEMGFKCFRLSIAWSRICPNGTK EINEEGLAFYDKVFDALLRNGIEPVVTINHFDIPMYLADEYDGWKNREVIDFFVFFCETI FTRYQDKVKYWMTFNEINFLRSWTQIGIHNNDKQSKYQAAHHLFVASAKAVELGHSINPD FQIGMMVAYIPSYPLSCKPEDVMAAVQFNREQEFYMDVQAKGYYPAHKLKEFEREGMTIQ MESEDLAIIQKGTVDYIGFSYYMSTVSTAYPEEVKYVGGNQMPAVKNPYLQESEWGWAVD PLGLRISLCQLSDRYNMPLFVVENGFGAVDTLQEDGSIVDDYRIDYFKQHIEAMRTAVEE DGVNLIGYTPWGCIDLVSAGTGEMKKRYGFIYVDMDDQGQGTLKRTKKKSFNWYKQVIAS NGENLTTE >gi|307679024|gb|GL456773.1| GENE 5 6886 - 7704 1017 272 aa, chain + ## HITS:1 COG:lin0517 KEGG:ns NR:ns ## COG: lin0517 COG0406 # Protein_GI_number: 16799592 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 1 269 1 270 270 288 58.0 8e-78 MKKRLTIVGMLFLAILVMVGCGKNQQATTKEKETKPEELTLYIVRHGKTMLNTTDRVQGW SDAVLTPEGEKVVTATGIGLKDVAFQNAYSSDSGRALQTAQLILDQNKAGKDLEVVRDPD LREFNFGSYEGDLNKTMWQDIADDQGVSLEEFMKNMTPESFANSVAKLDQQREESKNNWP AEDYATITKRLKKGLDKIVATESANSGNGNVLVVSHGLSISALLATLFDDFKVPEGGLKN ASVTTIHYKNGEYTLDKVNDVSYLEAGEKESK >gi|307679024|gb|GL456773.1| GENE 6 7842 - 8585 663 247 aa, chain + ## HITS:1 COG:L130660 KEGG:ns NR:ns ## COG: L130660 COG0596 # Protein_GI_number: 15673278 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Lactococcus lactis # 6 241 9 245 249 216 49.0 4e-56 MKNRTKSRWKKIVLGLGLFLVILVIGLTIFIKNSTYQATDSALKISQSATQEKNYDYYTN GQKNDTALIFYPGALVAPASYSEWAQEVATKGYDVYVVHFPLNLAVLAPNAAEQIIKDHP QQNFVLAGHSLGGVMASRFVAENEQRIKGMIYLASYPDEKGALNKQNLPVLSITATNDGV LNWTSYQKAKQFLPKDTQYVSIKGGNHAGFGNYGVQKGDNKATISNEQQQTEISQLIVAW LQSRPNK >gi|307679024|gb|GL456773.1| GENE 7 8603 - 9169 294 188 aa, chain - ## HITS:1 COG:lin2345 KEGG:ns NR:ns ## COG: lin2345 COG2169 # Protein_GI_number: 16801408 # Func_class: F Nucleotide transport and metabolism # Function: Adenosine deaminase # Organism: Listeria innocua # 3 185 2 184 184 189 48.0 2e-48 MKTTYRLTQKRWEAIQNNNTQFDGDFFYGVTTTKIFCRPSCPSRVPNKNHVLIFKTAQEA LTLGFRPCKRCQPTGQVVPNEEWVAQIKQFIDRHSAEPLSLDYLAQTCHGSPFHLQRTFK EQTKQTPLAYLTSIRIRQAQELLLHSPLTIQQIAKKVGFQTAAYFATTFKKETGVTPSVY RSKNEPKK >gi|307679024|gb|GL456773.1| GENE 8 9308 - 9799 546 163 aa, chain + ## HITS:1 COG:lin2344 KEGG:ns NR:ns ## COG: lin2344 COG0350 # Protein_GI_number: 16801407 # Func_class: L Replication, recombination and repair # Function: Methylated DNA-protein cysteine methyltransferase # Organism: Listeria innocua # 3 162 2 152 160 157 51.0 7e-39 MAKKIYYAQQEWQNDHYYLGVTDAGLAFVGSANQSIEELKNWYPQAQLEASEKKTAPYKE ALISYLNQHSTTFACPIDIEGTPFQKEVWQALQEIPYGETMTYQEISEKIGRPRAVRAVG TAIGKNPLLMVIPCHRVIGSKGQLTGYRGGLAMKQALLTFEQS >gi|307679024|gb|GL456773.1| GENE 9 9812 - 10252 204 146 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) [Campylobacter concisus 13826] # 10 144 20 154 185 83 31 9e-19 MNNYQWYTEQWGKPTREDDLLFLLLTVGVFQVGLSWKAAAGKKVAFMKNFCQMKPEKVAA LLPDEVDRIVADPDMIRNRRKIEATIKNAQAILKVQEEFGSFANYLWQFVKNVPVLSIYE EAYQVPRTQLLSDNVAKDLKKEDFLL >gi|307679024|gb|GL456773.1| GENE 10 10336 - 11010 746 224 aa, chain + ## HITS:1 COG:BH2835 KEGG:ns NR:ns ## COG: BH2835 COG1418 # Protein_GI_number: 15615398 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Bacillus halodurans # 11 222 3 213 215 216 51.0 2e-56 MFENESLSFEEQTIIQAAERYVQQELANEASGHDWWHIYRVTQLAKTIAEKEQANLFLCI LTALLHDIGDEKFNESEEAGLLKVQQWLEANNVSTEQTNHILSIIANMSFKGGNTGKTVT TLEGKVVQDADRLDAIGAIGIARVMAYSGNKGRLIHDPHKQPREQLTQEEYRNGEDTAIM HFYEKLLKLKEQMNTNYGRLLAEKRHQFMELYLEEFYQEWDGHR >gi|307679024|gb|GL456773.1| GENE 11 11153 - 12088 1239 311 aa, chain + ## HITS:1 COG:L67760 KEGG:ns NR:ns ## COG: L67760 COG0053 # Protein_GI_number: 15673428 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted Co/Zn/Cd cation transporters # Organism: Lactococcus lactis # 1 310 1 310 314 392 69.0 1e-109 METKKSSGMFAVIAALIANILVAISKFVGFALSGSTAMMNESIHSVVDCSNQVLLLFGNK RASRGQSALHQFGEGRAKYFFSTIVATMLFFGGGALGVMEAIQKLLHPSHEVENVAIVIG ILIFGLLVEGSSLRVAMKEIKELNTEKLSLLKFLRESRHSEILIIFTEDFCAVIGLCLAL VGTLLTMVTGIAAFDAISGLLIGLLLMCAAIFLAKEFYSLIIGESVTATDLAKIKTAFDR ADVEKLIDVKTVHLGPTEILVAAKIDVVEPMEEDAPDVVNAIERDIRSKMPDKKIYIYIE VDDYDVNYVRK >gi|307679024|gb|GL456773.1| GENE 12 12133 - 12531 423 132 aa, chain + ## HITS:1 COG:no KEGG:EF0281 NR:ns ## KEGG: EF0281 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 132 1 132 132 243 96.0 2e-63 MQEAIITSTVDLTSGGCNACGLVEDTVYTLAMNGVDIPLDGLTVAHLVSAVVARNGFKQE LQMDMLDDEYILYRKEDTAVTFKEAYNHLSYDNGSEKIQSKNKLEDLPELFEQVNQILTT VFGIETVNFIIE >gi|307679024|gb|GL456773.1| GENE 13 12630 - 13382 1066 250 aa, chain - ## HITS:1 COG:L161132 KEGG:ns NR:ns ## COG: L161132 COG0623 # Protein_GI_number: 15672548 # Func_class: I Lipid transport and metabolism # Function: Enoyl-[acyl-carrier-protein] reductase (NADH) # Organism: Lactococcus lactis # 1 250 1 250 250 337 72.0 1e-92 MFLQNKNVVVMGVANKKSIAWGCAKALKDQGANVIYTYQNERMKKQVVKLADENDLLVEC DVASDASIQAAFETIKNEVGTIDGLVHAIAFAKKEELSGNVSDITRDGFLLAQDISSYSL LAVTHYAKPLLNPGSGIVTLTYLGSERAIPNYNMMGIAKASLETAVKYLAFELAADKVRV NGISAGAIKTLAVTGVKDYDQLISISNERTPDKTGVTIEEVGNTCAFLVSELASGVVGDI IYVDKGVHLT >gi|307679024|gb|GL456773.1| GENE 14 13680 - 14918 1602 412 aa, chain + ## HITS:1 COG:CAC3573 KEGG:ns NR:ns ## COG: CAC3573 COG0304 # Protein_GI_number: 15896807 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Clostridium acetobutylicum # 2 410 3 411 411 440 56.0 1e-123 MKRVVITGMGAVTPLGNTVKEFWHNLVDGKLGIGKITKFDSEDTGVALAGEVKEFDPSAV LERKEQKRMDLFSQYGLVAALEAWEMSGLTEAMIDPTRLGVIVGSGIGGMTTLQDQVRVM DKKGAKRVTPFFVPMVIANMAAGNISIRLGAKGPSQTIVTACASATNAIGEAFRTIKYGL ADMMVTGGTEATVCEIGIAGFAALNALNTTEDATRASIPFDKERKGFVMGEGAGMLILEE LEHAQKRGATIYGEIVGYGSNCDASHMTAPLKDGSGAAAAMEMAIAEAGITPEQIGYINA HGTSTPANDAAETTAIKRVFGERASQIPISSTKSMTGHLLGAAGGIEAIACVQTLQEGKA HPTVGYQVADPDCDLDYVTEGARDITADYTISNSFGFGGHNGVICLKKWEEN >gi|307679024|gb|GL456773.1| GENE 15 14920 - 15354 742 144 aa, chain + ## HITS:1 COG:L160425 KEGG:ns NR:ns ## COG: L160425 COG0764 # Protein_GI_number: 15672547 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases # Organism: Lactococcus lactis # 2 142 4 143 151 197 71.0 6e-51 MKKVMTATEIMEMIPNRYPICYIDYVDEIIPNEKIIATKNVTINEEFFQGHFPGNPTMPG VLIIEALAQVGSILILKMDQFEGETAYIGGINKAKFRQKVVPGDVLKLHFEIVKLRDFVG IGKATAYVEDKKVCECELTFIVGR >gi|307679024|gb|GL456773.1| GENE 16 15446 - 16336 342 296 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|255970899|ref|ZP_05421485.1| ## NR: gi|255970899|ref|ZP_05421485.1| predicted protein [Enterococcus faecalis T1] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9504_01096 [Enterococcus faecalis TX0102] predicted protein [Enterococcus faecalis T1] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9504_01096 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9495_02132 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9502_00801 [Enterococcus faecalis TX0031] hypothetical protein HMPREF9503_00491 [Enterococcus faecalis TX0043] hypothetical protein HMPREF9508_01303 [Enterococcus faecalis TX0312] putative membrane protein [Enterococcus faecalis 62] # 1 296 1 296 296 513 100.0 1e-144 MLKNLQPQFFKQIVIYGLLFVFWGTLNYFFESIPKGLNRIVFGILSFTYIFLYMKNRKSV SGNKGDLAIWILIISGFFALVDVTYYLNIRGKITLYFSLVYILSIILIFIVCELKSDPKI KLKNILKISAVVYSLGFFDRDWWTVIPLFTAFVLLFYSKEGIDYFAQEELTEIKIPNFLQ KKWRRTKFLIVIWSVMLYSSFVISDILESCGWINKISLYFFPEDSLEFYRIWFSKGLIRL CILGIIYILGKKYLLKFKPVNTLIELYKEVARTNETEFKRNTKKHQIQKNARRKYK >gi|307679024|gb|GL456773.1| GENE 17 16428 - 17363 1144 311 aa, chain + ## HITS:1 COG:L192589 KEGG:ns NR:ns ## COG: L192589 COG0167 # Protein_GI_number: 15673534 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Lactococcus lactis # 3 311 2 311 311 438 67.0 1e-123 MDISVEFSGHKLANVLMNASGIHCMTIKEMDELAASQAGAFVAKTATPNPRQGNEEPRYF DTPLGSINSMGLPNLGIDYYLDYQIARQKEFPEELRFLSVSGMNYEENIAILKKVQESEY TGVTEFNLSCPNLPGKPQIAYDFELTEKLLTEVFQFFTKPLGVKLPPFFDIAHFDAMAEI LNKFPLVYVNSINSIGNGLYIDSDKEEVVIKPKGGFGGLGGEYVKPTALANVRAFAQRLK PEIKIIGTGGITCGKDVFEHLLCGATLVQVGTQLHQEGPQVFERLAKELQEIMAAKGYES IEEFRGKLKEM >gi|307679024|gb|GL456773.1| GENE 18 17401 - 18048 741 215 aa, chain - ## HITS:1 COG:no KEGG:EF0286 NR:ns ## KEGG: EF0286 # Name: not_defined # Def: fibronectin-binding protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 215 1 215 215 422 99.0 1e-117 MNPTIQPYQFNIIKEQVAVLLNTYTSVNDATTVKTVQALCAEKINGLFPEEHPAVTILLD KVMDRRLTRARAEKYLDELKETVLPFKEPSTPQVTKVFRKVKKLKIPEWENMDLRNNTYV GWNDAGTQKKFILAYRENKLIGVHGTLSPTIVKGVCSICQTITNVSMFLATTKSGGDGTY TKKGNYICHDSDTCNQQLTQPEYLEAFMENVKAVK >gi|307679024|gb|GL456773.1| GENE 19 18403 - 18963 791 186 aa, chain + ## HITS:1 COG:SPy1821 KEGG:ns NR:ns ## COG: SPy1821 COG0231 # Protein_GI_number: 15675650 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Streptococcus pyogenes M1 GAS # 1 185 1 185 185 258 74.0 4e-69 MIAASDLKAGMTFEQDGKLIKVMEASHHKPGKGNTVMRMKLKDVRTGSTTDTTMRPDEKV KKAHIDTKPVQYLYSQDDMAIFMDLETYEQYEVPTALIEEELKYLLENMEVKIQFYGEEV IGLTLPTTVILRVAETQPSIKGATVTGSGKPATMETGLVVNVPDFVEADELLEINTAEGT YLKRAK >gi|307679024|gb|GL456773.1| GENE 20 19132 - 19269 150 45 aa, chain + ## HITS:1 COG:no KEGG:EF0288 NR:ns ## KEGG: EF0288 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 45 1 45 45 69 97.0 3e-11 MTKKQASPFLETESCCCMVQNSAAYSFVMGKTSVISEKLPNTIPL >gi|307679024|gb|GL456773.1| GENE 21 19359 - 20276 1214 305 aa, chain + ## HITS:1 COG:HP0107 KEGG:ns NR:ns ## COG: HP0107 COG0031 # Protein_GI_number: 15644737 # Func_class: E Amino acid transport and metabolism # Function: Cysteine synthase # Organism: Helicobacter pylori 26695 # 1 304 2 305 306 395 67.0 1e-110 MIVQSILDTIGATPLFEFTSEQYPMPEGTKIYAKLEYLNPGGSVKDRLGVHLLKEAMKTG KINQATTIIEPTAGNTGIGLALAASQLGLKTIFVVPEKFSQEKQQLMQALGAKIVPSPTE QGIVGAIISAQDLAKEIPNSYVPLQFENPDNPAAYYEGLGPEIVQDLGGKITSFVAGLGS GGTFAGVGRYLKEQNSKTQLWGVEPEGSILNGGPAHGHEIEGIGVEFVPPFLKQIPVDGF YTISDEDGFFWVKQLAKKSALLVGSSSGAAFAAALREARRLPAGSTIVTIFPDGSDRYLS KNIYS >gi|307679024|gb|GL456773.1| GENE 22 20290 - 21426 1580 378 aa, chain + ## HITS:1 COG:L0181 KEGG:ns NR:ns ## COG: L0181 COG0626 # Protein_GI_number: 15672763 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Lactococcus lactis # 5 377 6 378 380 530 71.0 1e-150 MKFNTKLIHGGISKDTTTGAVSVPIYQTSTFEQNGVGQPKEYEYSRSGNPTRHALETLIA ELEGGSHGFAFSSGLAGIHAIISMFGPEDHILLGDDVYGGSFRLLDKVFVANGLSYTIVN ASDLSTIEAAIQPNTKALFLETPSNPLLKITDIEAAAKLAKKHQLLTIVDNTFATPYFQR PLALGADIVVHSGTKYLGGHSDVVSGLVVTNHPESAEKIAFLQNAIGAVLGPHDGWLVQR SLKTLGVRMAAHAQNAQKIAEFLEAHPAVATVYYPGLASHPGHEIAQKQMSGFSGMISFE LAKDEQVVPFVEALEIFTLAESLGGVESLIEVPAIMTHASIPKENREAVGIKDGLIRLSV GIEAVEDLLTDLEKGLQA >gi|307679024|gb|GL456773.1| GENE 23 21463 - 22893 1661 476 aa, chain - ## HITS:1 COG:L22116 KEGG:ns NR:ns ## COG: L22116 COG2723 # Protein_GI_number: 15672399 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Lactococcus lactis # 4 476 3 478 478 774 76.0 0 MSILKNDFLWGGAVAAHQLEGGWDQGGKGVSVADVMTAGAHGVPRKITAGVLPDEHYPNH EAIDFYHRYQEDIQLFKELGLNCFRTSIAWTRIFPNGDEETPNEEGLRFYDALFDECLKN GIEPVVTLSHFEMPYHLVTKYGGFRNRQVIDFFVKFAEVCFTRYQKKVKYWMTFNEINNQ ANYEEDFAPFTNSGIAYQEGEDREAIMYQAAHYELVASARAVKIGHAINPDFQIGCMIAM VPIYPYSCNPEDMMMSVSAMQKRYWFTDVHVRGHYPSAIQCYLKRKNISLDVTEEDLTDL ANGCVDYIGFSYYMSFAVKGAEKAPTFDYNEAKDLVRNPYVATSDWGWQIDPMGLRYAMN WFNDRYELPLFIVENGFGAIDELEPDGTINDTYRIAYLREHIEMMKEAVAYDGIDLMGYT PWGFIDLVSASTGEMKKRYGFIYVDKDNDGHGTLERRKKKSFAWYQQVIATNGEEL >gi|307679024|gb|GL456773.1| GENE 24 22920 - 24254 1357 444 aa, chain - ## HITS:1 COG:CAC0386 KEGG:ns NR:ns ## COG: CAC0386 COG1455 # Protein_GI_number: 15893677 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Clostridium acetobutylicum # 5 426 7 444 450 411 51.0 1e-114 MNEWINEKLLPPVLKFVNTKAITALRNGMLYTMPFTIVGSVFLLLANFPVTAISEWVNAS GLAVYFNQAYGASFAIMSLFAVIGIAYSYVKSEGFEGLPAGMIAMVVFILFMSSEVKDAV SGAVVGNVINKDWTAGKGMITAIIVGLLVGVVYSWFLRHDIRIKLPEAVPENVANSFTAL IPASVIVTGAMLIFILLDKVFNTTFFDFIYEVLQSPLQGVTDSLGGALLLGFVIPLFWFF GVHGSTIVGGIMGPILQANSLENTEILKSGKDLTLANGGHIVTQQFLDQFLTVTGAGMTI GLVVFMVFFAKSAQFKQLGRLSIGPAVFNINEPIVFATPIVMNPIMAVPFIITPIVSSVV TYFALYTGLVPLFTAVQVPWTTPPIISGLLVGGWQAALLQVVVLTMSFFIYLPFAKKMDA LNYAEETNQPITEETLEKVEAQNV >gi|307679024|gb|GL456773.1| GENE 25 24428 - 25189 657 253 aa, chain - ## HITS:1 COG:L17893 KEGG:ns NR:ns ## COG: L17893 COG1737 # Protein_GI_number: 15672394 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 1 241 2 241 248 207 42.0 1e-53 MFDLEKVQTLNELEMLVYHYVLEHLHQIPQQTIRQLATSCHVSTSTILRFCNKMGYAGFS ELKYAVKEEAKQTQTFENFYDATVHVDAFLKKLNQETYYEMLRPAIQMIVQARHVAFTGI GTSGILGSYGSRYFANLNINSYSIADPFTPIPKRGFENTLALILSVSGETNEMIKQMTDF KTAGAKVLSITNNQHSTIARLADYNISYYMPDERSPFADKSVNTTTQIPVIALIELLAHQ ASQLLKELDETPF >gi|307679024|gb|GL456773.1| GENE 26 25436 - 25978 567 180 aa, chain + ## HITS:1 COG:BS_ywjB KEGG:ns NR:ns ## COG: BS_ywjB COG0262 # Protein_GI_number: 16080775 # Func_class: H Coenzyme transport and metabolism # Function: Dihydrofolate reductase # Organism: Bacillus subtilis # 1 176 1 173 174 122 39.0 3e-28 MAREVILFIAASIDGFIADKAGGVAWLEENIRGDEEDRSYDEMYEKIDTVVMGRTTYDQV TQELSPDVYFYEDKHSYIITSHPEPSTASRTFTKEDPVTLIRRLKEEDGAGIWIVGGPKV VQPLLAADLIDTFILTTIPLFLGEGIALYETMAQSIPVRLKQVYQKNELVYSIYQRENKN >gi|307679024|gb|GL456773.1| GENE 27 26110 - 27477 1273 455 aa, chain + ## HITS:1 COG:BS_yubG KEGG:ns NR:ns ## COG: BS_yubG COG0168 # Protein_GI_number: 16080162 # Func_class: P Inorganic ion transport and metabolism # Function: Trk-type K+ transport systems, membrane components # Organism: Bacillus subtilis # 2 455 5 445 445 285 41.0 2e-76 MKHQIKRRLYISPVQTIVLGFFLLIVVGTILLMMPFSAQAGQKTQWIDAFFVATSAVCVT GLSPLNTAEHWSPIGQVIIMILIELGGLGFLTVATIFFSLLRKKASLSVRMLYQEALNVS EVSGVFRLMKYIMKFAAIIQLLGAFLLSFQFVPTFGWKKGLFFSLFHAVSAFCNAGFDLL GDSMVPYQNSPYLLLVISFLIIAGGLGFIVWRDIFAMIKGYKNKIKHRVSIHTRLALTVT ATFLVLGTVIFYISEYRHFPADMSFWQRLVNSWFLSVTPRTAGFYSVDYLKMSNPGLIVT ILWMFIGGTSGSTAGGLKTTTFGVLFLQFRAIFKGKQRVEFHERTIPERVVLQAFTLFFL ATFLCVTASVILSFTETLPLKNGIEYIVFEVISAFGTVGLTMGLTPDLTVFGKLVIIFLM FVGRVGVYTVLLSLIKKGLESQSKVQYPKESVMIG >gi|307679024|gb|GL456773.1| GENE 28 27498 - 28661 1439 387 aa, chain + ## HITS:1 COG:L176399 KEGG:ns NR:ns ## COG: L176399 COG0475 # Protein_GI_number: 15673897 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Lactococcus lactis # 7 384 7 379 379 239 43.0 8e-63 MEFLGILCLILITTTLAGVACKRVGIPAVIGQLLVGIVLGPAMLNIVHQDVFVHDFSEIG VIMLMFIAGMECELELLKKYAKPSVMVAILGIVLPVGFTMLIGQLFAFSWKEAFFLGLVL AATSVSISVEVLRELNVLSSKEGATILGASVVDDIVVVIILSVAVGMIGASTGGNTEVSF IVKLIEQGLFFIGIFFLVRFIAPYLLRLSQKMNIGSSVIIMSLIICLGMAYLADLVGLSS VVGAFFAGIAVGQTDAKTEIDFNIEAIGYAVFIPVFFASIGLSVTFNTLGKDLPFILVMT IMAILTKLLGGAWGAKMVGFSNTSSLMVGAGMVSRGEMALIIAQIGYQSKLLSEAYYTSM IVVIILTTLVAPFLLKYFVKKQESALQ >gi|307679024|gb|GL456773.1| GENE 29 28789 - 29229 407 146 aa, chain + ## HITS:1 COG:SPy1717 KEGG:ns NR:ns ## COG: SPy1717 COG3682 # Protein_GI_number: 15675568 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 6 144 1 139 144 100 35.0 1e-21 MAKDKLATITDAEWEVMRVIWTQGKTTSREVHTLLNEKKEWKSTTVKTLLSRLTDKGLVG TEKVGNKYIYYPLVEERRSVETVADELLAKVCSRKVGSVVETILTESQLSYDDLDRLEEL LKEKRKTAVESVPCNCIPGQCQCHLI >gi|307679024|gb|GL456773.1| GENE 30 29245 - 31731 3017 828 aa, chain + ## HITS:1 COG:CAC3655 KEGG:ns NR:ns ## COG: CAC3655 COG2217 # Protein_GI_number: 15896888 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Clostridium acetobutylicum # 1 817 1 814 818 942 63.0 0 MESKTFDIEGMSCASCAQTIEKATAKLPGMAKASVNLATEKLSVTYDQTAVTEEEIKEAV SDAGYKAISPAQQRTFAIEGMSCASCAQTIEKAVNQLSGVQQAIVNLATEKLVVSYDDHQ VTSAEIIKAVTDAGYQATEEVAAGATADQDREKKQKHIAEMWQRFWISAVFTVPLLYIAM GHMVGLPLPDFLNPMTHATTFAMVQLILTLPVLYVGREFFTVGFKALFKGHPNMFSLVAL GTSAAFVYSLYGTVMIFLGDTSFTMALYYESAGVILTLITLGKYFEAVSKGKTSDAIKKL MGLAPKTAHILRDGAEIEVPVDAVQLDDIVIVRPGDKIPVDGVIVSGSSSVDEAMLTGES LPVEKKVGDAVIGASINKNGSFQFKATKVGKETALAQIIQLVEDAQGSKAPIAQLADKIS GVFVPIVIGLAVLSGLAWFFLGQESWIFALTITISVLVIACPCALGLATPTAIMVGTGKG AENGVLIKSGDALETTHKIQTIVFDKTGTITEGKPVVTDILVADSALSEAELLTLAASAE QGSEHPLGEAIVGAAKERQLPLAEGSDFSAIPGHGIRVTVNERVLLLGNIKLMKEEGIEL STFVQQADRLAEEGKTPMFVAKDGSFAGIIAVADTVKDSSQTAIARLHKMGIEAVMITGD NKRTAEAIAKQVGIDRVLSEVLPEDKALEVKKLQAEGKKVAMVGDGINDAPALAQADVGI AIGSGTDVAMESADIVLMRSDLMDVPTAVELSKATIKNIKENLFWAFAYNTLGIPVAMGV LHLFGGPLLSPMIAAAAMSFSSVSVLLNALRLKGFKPSTVKRTSGSQK >gi|307679024|gb|GL456773.1| GENE 31 31753 - 31959 268 68 aa, chain + ## HITS:1 COG:no KEGG:EF0299 NR:ns ## KEGG: EF0299 # Name: copZ # Def: copper transport protein CopZ # Organism: E.faecalis # Pathway: not_defined # 1 68 1 68 68 102 100.0 3e-21 MEKTVKIDGMKCDGCVQAVTEKFSGIDGVTNVAVHLADQTAVVTADREVSQDELNTTLAD TKFKVVSE >gi|307679024|gb|GL456773.1| GENE 32 32004 - 33374 1063 456 aa, chain - ## HITS:1 COG:no KEGG:EF0300 NR:ns ## KEGG: EF0300 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 456 1 456 456 825 99.0 0 MAVFFYFILVSVAFFMAFTMGIYANPHKNIILENTLPEDKLQDPSVQAIRKRYKKRLVQL AAVFSVLSLPLLFIPYDSILLFLFLLLLFSFIGSGYYLQIVYIRKMAALKMQNGWLLPKR PLLIDTQLVLNKNQKLISFWWFLPAIILTFAGGFYSLQTAIGSWILFLITVLMLSLFIGG YYFIARLPVKPLTSDSKINQQINDLFRHHWSVLMVLSALVFAPLTILPTFTIVIDYTVAM ALTFCYFILLFVYVGFLFYYLFSMRKKQDQFVLQAGDYRYGDDDQYWRYGIYINPKDPKI MVPDRIGMNLSINLGRPAGKIILAATGILTIAVLFFATVPMFINDFSSHAFQATIENKQI ELSAPLAKTRSIPFNQITAVSLIDDLPQERIRTMGAATDSYLTGEFKVAGKPAYLLIYTK SHPILKIETREKVYYYTAREGQETTKIYQEIKAKLP >gi|307679024|gb|GL456773.1| GENE 33 33374 - 33763 511 129 aa, chain - ## HITS:1 COG:CAC0599 KEGG:ns NR:ns ## COG: CAC0599 COG1725 # Protein_GI_number: 15893888 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 1 124 1 125 125 105 44.0 2e-23 MLLEIDEQSEQPIYQQLIDQIIVGIAKGELAPNESLPSIRQLADEIGVNMMTVSKAYNKL KQSGYIVTDRRNGTKIAAKLPATAVWQQQLHERLELLLAESFLHQQSEAEIQALIQKIYQ NFDSKGRAL >gi|307679024|gb|GL456773.1| GENE 34 33913 - 35241 1662 442 aa, chain + ## HITS:1 COG:SPy1651 KEGG:ns NR:ns ## COG: SPy1651 COG3579 # Protein_GI_number: 15675522 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Streptococcus pyogenes M1 GAS # 1 442 1 443 445 561 61.0 1e-160 MTAIEPKLTEKFHQDFLNNNKQNALQRGVVKNGISASGESVQGAVNNVPVFSVDLATGKV ANQKQSGRCWMFAALNTFRHRMLNAFQLKDFELSQNYTFFWDKYEKSNYFYENIIATADQ PLTSRKVAFLLATPQQDGGQWDMIVSIFDKYGVVPKTAMPESSNSSNSRDLNNYLNKKLR KDATILRSLIEKGASAEEVQKNKEAMLQEIYNFLAISLGTPPETFDFEYRDEEKNYHLDQ NLTPQTFFEKYVGVNLHDYVSIINAPTEDKPFNKTYTVEMLGNVVGGKEVKYLNVEMAAF KKLAAAQLEQGESVWFGCDVGQSSTRDTGIMALDVYDMNDLFDIDFTMTKAERLDFGESL MTHAMVLTGVDIVDGQTTKWKVENSWGEKVGENGFFVMSDAWMDEYTYQIVVHKDLLTDE QKKAWEQAPTVLAPWDPMGALA >gi|307679024|gb|GL456773.1| GENE 35 35357 - 35977 732 206 aa, chain - ## HITS:1 COG:lin0755 KEGG:ns NR:ns ## COG: lin0755 COG1853 # Protein_GI_number: 16799829 # Func_class: R General function prediction only # Function: Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family # Organism: Listeria innocua # 1 205 1 205 206 181 47.0 1e-45 MIHYNSNELSAKTAYKFLSGSIIPRPIAWVTTQDTATGIVNAAPFSFFNAAAAEIPLATL SILRPDKEPKDTARNILATKELVIHFVNENVLTQMNQTSAPLAAEISEIDTFGIETIASQ TVAVPAIKAAPIRMEARLHQYVPIANHEGQIITDLFIVEITDFYFDSAVFDEEHQYILPE KLQPIARLAGNDYTTLGEIREVRRPT >gi|307679024|gb|GL456773.1| GENE 36 35999 - 36973 1214 324 aa, chain - ## HITS:1 COG:lin0753 KEGG:ns NR:ns ## COG: lin0753 COG0346 # Protein_GI_number: 16799827 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Listeria innocua # 7 316 7 316 319 415 63.0 1e-116 MNTQILGLHHVTAMTSSAEKIYHFFTDILGLRLIKKTVNQDDIETYHLFFADDAGSPGTD MTFFDFPGLPKGTKGTNTISRTSFRVKDDAALDYWVSRFNEYAIDHGEIQERFGKKYLEF EDFDNQRYQLISDEKNQGVAAGTPWKKSNVPSEHALIGLGPAFVTVENYEHLQLVLTEVL GFKLIDAEGSFHLFEVGEGGNGASIIVEHREDLPAAQEGYGNVHHLALRVADEEALRFWI EKINRLEFPNSGFVERFYFKSEYFLAATHVLFELATDGPGFLEDETYEHAGEKLSLPPFL EPKRAGIEEFVRPFDTSDANVQRN >gi|307679024|gb|GL456773.1| GENE 37 37260 - 37595 427 111 aa, chain + ## HITS:1 COG:BH0686 KEGG:ns NR:ns ## COG: BH0686 COG2076 # Protein_GI_number: 15613249 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Bacillus halodurans # 1 111 1 111 114 85 49.0 3e-17 MSKAWLKVIFGAFCEVIWVIGMKHSTTWWEILGTVIAIFISFYALIKAGEELPVGTAYAV FVGLGSAGTIVTDHFLFHTPLGIGKVLFLLLLLIGVIGLKMVTGNKEEETR >gi|307679024|gb|GL456773.1| GENE 38 37592 - 37903 552 103 aa, chain + ## HITS:1 COG:BS_ykkD KEGG:ns NR:ns ## COG: BS_ykkD COG2076 # Protein_GI_number: 16078375 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Bacillus subtilis # 1 102 2 104 105 84 46.0 3e-17 MSWLYLVIAGCFEIFGVGSIKLFTTKKDLRSLLILILAFSGSFLFLYLGMRQLPMGVSYA VWTGIGTAGGAILGMLLGESKDLRRIFFIFLIIVSVIGLKLIG >gi|307679024|gb|GL456773.1| GENE 39 37999 - 39045 1216 348 aa, chain - ## HITS:1 COG:lin1996 KEGG:ns NR:ns ## COG: lin1996 COG3469 # Protein_GI_number: 16801062 # Func_class: G Carbohydrate transport and metabolism # Function: Chitinase # Organism: Listeria innocua # 11 347 13 349 352 453 66.0 1e-127 MKLKKIIPAFLLLSTVAVGLWLTPTQASADAADTMVDISGKKVLVGYWHNWASKGRDGYK QGTSASLNLSEVNQAYNVVPVSFMKSDGTTRIPTFKPYNQTDTAFRQEVAQLNSQGRAVL LALGGADAHIQLVKGDEQAFANEIIRQVETYGFDGLDIDLEQLAITAGDNQTVIPATLKI VKDHYRAQGKNFIITMAPEFPYLKPGAAYETYITSLNGYYDYIAPQLYNQGGDGVWVDEI MTWVAQSNDALKYEFLYYMSDSLIHGTRGYLQIPNDKLVLGLPANRDAAGSGYVVEATPV AKTFDQLAKDGNPIRGLMTWSANWDVGQDVNGKSYNNEFATRYSNLVK >gi|307679024|gb|GL456773.1| GENE 40 39088 - 39672 729 194 aa, chain - ## HITS:1 COG:lin2611_1 KEGG:ns NR:ns ## COG: lin2611_1 COG3397 # Protein_GI_number: 16801673 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 8 193 7 191 294 170 47.0 2e-42 MKKSLLTIVLAFSFVLGGAALAPTVSEAHGYVASPGSRAFFGSSAGGNLNTNVGRAQWEP QSIEAPKNTFITGKLASAGVSGFEPLDEQTATRWHKTNITTGPLDITWNLTAQHRTASWD YYITKNGWNPNQPLDIKNFDKIASIDGKQEVPNKVVKQTINIPTDRKGYHVIYAVWGIGD TVNAFYQAIDVNIQ >gi|307679024|gb|GL456773.1| GENE 41 39947 - 40681 874 244 aa, chain + ## HITS:1 COG:SP1408 KEGG:ns NR:ns ## COG: SP1408 COG3884 # Protein_GI_number: 15901262 # Func_class: I Lipid transport and metabolism # Function: Acyl-ACP thioesterase # Organism: Streptococcus pneumoniae TIGR4 # 1 242 1 239 245 177 39.0 2e-44 MGKKHTSSYEVAYYDGDFTGAMKIPALLAVVIKVSEEQTELLGRDAAYVAQFGLGWVITN YEIEIHRLPKVGEKVAITTQAMSYNKYFCYRNFWVHDEEGNECVFVKSTFVLMDQKNRKI SSVLPEIIAPFDSEKITKIYRHEKIEKVTEGNFLPYRVRFFDIDGNQHVNNAIYFNWLLD VLGYDFLTTHQPKKILVKFDKEVEYGQEVESHYEIVEQENQLKTRHEIRIDGQTYCEANI DWTN >gi|307679024|gb|GL456773.1| GENE 42 40732 - 41565 842 277 aa, chain + ## HITS:1 COG:lin2505 KEGG:ns NR:ns ## COG: lin2505 COG1801 # Protein_GI_number: 16801567 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 277 2 279 281 261 46.0 1e-69 MIRLGLTSFSEHDYLTGKKRSTLYEYASHLPLVEMDTAYYGIPPKERVAEWVKAVPENFR FVMKVYSGISCQGEWQTYYASEEEMITAFLESMAPLIESKKLFAFLVQFSGTFGCTKENV AYLQKIRHWFKDLPIAIELRNNSWYQPNFVKQMLQFMKENQFSLVIVDEPQIPTNPVPFY PYVTNPNLVLFRFHGRNAAGWLANDAEWRKKRTLYHYNTQEIADLSEAVLKMSQEAKEVG VIFNNNSGGDAAENALQMQKVLNLSYDDLNPKQLDLF >gi|307679024|gb|GL456773.1| GENE 43 41582 - 42118 657 178 aa, chain + ## HITS:1 COG:L143879_2 KEGG:ns NR:ns ## COG: L143879_2 COG4696 # Protein_GI_number: 15672719 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 14 170 21 176 184 170 56.0 1e-42 MSEKQSPYEMACAFHEVFNPQQPEQPTAFSPELASRRAEFKVEELVEFLYSAADNDQVLF QQLVNGLKKSVDKAEQKVLAKGKPVSDPLVEEVDALVDLLYFTYGSFCLMGVNPTKIIEI VHQANMGKLFPDGQPHYDPETNKVLKPENWEQDFAPEAKIKAEIQRQLKITETNEKDE >gi|307679024|gb|GL456773.1| GENE 44 42141 - 43493 1641 450 aa, chain - ## HITS:1 COG:SP0413 KEGG:ns NR:ns ## COG: SP0413 COG0527 # Protein_GI_number: 15900332 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Streptococcus pneumoniae TIGR4 # 1 448 1 448 454 561 62.0 1e-159 MNVVKFGGSSLASAPQLQKVLQIVKEEPRRTFVVVSAPGKRTPQDIKVTDLLIQYYQRYL NNEEIESTISAIIRRYEDLFDELHLDKAVLADIAISIRQLATLPKENNAFLFDYFLASGE DNNAKVVASFFKQNGLDARYISPKELGLLVTPEPGNARILPKALEKISVYRETQQILVIP GFFGYTEAGEICTFSRGGSDITGSIVAAGVQADLYENFTDVDGIYVAHPGIIEQPQTIQE LTYREMRELAYAGFAVLHDEALMPAYRANIPVVIKNTNNPHHPGTLITTSRKVKHAPVVG IASDQGFASIYISKYLMNRELGFGRRLLEVLEKLALSYEHMPSGIDDITIVLREDQLTTE IENRLMAQLQEVLAPDELRITHHLSMIMIVGEGMRQRIGVTAESTMALAKEKINLEMINQ GSSEVSIMFGIKKEQEEKAIKALYRTFFHD >gi|307679024|gb|GL456773.1| GENE 45 43680 - 44366 884 228 aa, chain + ## HITS:1 COG:L150333 KEGG:ns NR:ns ## COG: L150333 COG0637 # Protein_GI_number: 15672725 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Lactococcus lactis # 7 219 5 217 222 175 42.0 8e-44 MTESKTAIIFDMDGVLVDSEAYYYERRKAFLAEFDLTIEGLTLPELVGADMRSLWQKIEQ VNKKELDIAFLNEQYIAYKKAHPIDYLAVLDENAKRVLQFLKRQGYKIGLASSSTKDAIE EVLTVGQLSSYFDAVVSGEDFEESKPAPDIYLHTLQELAVAPQECIAIEDSEKGIASAKE AGLEVWAMRDEHFGMDQSQADAFLTQLSDICKKISENRIDESSESTPS >gi|307679024|gb|GL456773.1| GENE 46 44552 - 46288 2172 578 aa, chain + ## HITS:1 COG:L7722 KEGG:ns NR:ns ## COG: L7722 COG4477 # Protein_GI_number: 15674133 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Negative regulator of septation ring formation # Organism: Lactococcus lactis # 20 574 19 574 576 397 40.0 1e-110 MKNNWIIILVLVIVIIAAVLYLIGYFMRKKNQEQLDELEVRKEALFDLPVFEEIDDIKKM HLVGQSQNSFREWNQRWVELSTRSFAELESQIYEVENQNEIFRFMKAKKAVVEANETMTE MEAEVEVIRNGLKELRESEERNSLEVQKALDVYEELSKSLKDDKASFGPAYSEIQKQLRN VEIEFTQFVTLNTSGDPIEAREVLEDAERHTYELEDLMKRIPPMYEELNETFPDQLKEIE EGYNQLLADDYVFPEQNFAEEIQHAKKRVENSMADLEKTEIAAVEVANRDTATAIDALYE VMEREIEAKKYVVTNQKIIDDYISHSLKNNRQLMIELDHVSQSYTLNNNELGRSRGFQTE IEEIIRRQKDLEPRMKEHTVPYSEIQAFYKECYKILDDIENQQLEIDASLKELRKGEKVA QEKVDEYEFRLRSIKRYVEKQRLPGLSADYLEFFYVATDRIEDLSRALNKMRINMDEINR LCDLCEDDLELLDKKTKDLVNAAALTEQMMQYANRYRHTHENIRAALDKSMYLFSTEFRY QDALDEIGTALEAVEPGAFKRIEDFYFKNINNPNLTAI >gi|307679024|gb|GL456773.1| GENE 47 46415 - 47560 1212 381 aa, chain + ## HITS:1 COG:L122222 KEGG:ns NR:ns ## COG: L122222 COG1104 # Protein_GI_number: 15672519 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Lactococcus lactis # 1 381 1 380 381 478 62.0 1e-135 MIYFDNSATTPIYPQALDTYVKTSQRIIGNPSSLHDLGNQANRLLQQARKQIAELINVSA NEIYFTSGGTEGDNWVLKGTAIEKREFGNHIIISAVEHPAVTETAEQLVELGFELSYAPV DKEGRVKVEELQKLIRKETILVSVMAVNNEVGTIQPIKEISEVLAEFPKIHFHVDAVQAI GKVNYSEWLTDRVDFATFSAHKFHGPRGIGFMYWKQGKRLAPLLTGGGQENNQRSGTENV PAIVAMAKALRLHLENEQQRPQHVATLRSYLLKALEEFQNVTVFSQDNEHFAPHILCFAL KGIRGEVLVHALEEKQIYISTTSACSSRKKMASSTLYAMHVPGELATSAVRISLDESNTM AEIEQFMIVFNQLYQKFSRVN >gi|307679024|gb|GL456773.1| GENE 48 47613 - 48077 378 154 aa, chain - ## HITS:1 COG:CAC0321 KEGG:ns NR:ns ## COG: CAC0321 COG0745 # Protein_GI_number: 15893613 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 1 152 76 228 230 164 55.0 5e-41 MIVSAKKEDIDKIRGLGLGADDYIIKPFSPNELVARAKAHMNRYQLLSKAEQPPQLLKIN EIAVDTAAHKVFVLENEVIFTSKEYKLLVFLMEHPNRVWNKEELFESVWGFDALDTEVST VVVHIKRIREKLKKANLSDSPIETLWGSGYRFNR >gi|307679024|gb|GL456773.1| GENE 49 48074 - 48304 315 76 aa, chain - ## HITS:1 COG:CAC0321 KEGG:ns NR:ns ## COG: CAC0321 COG0745 # Protein_GI_number: 15893613 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 5 70 4 69 230 82 62.0 3e-16 MKPHVLIIEDDPSIADLQKDYLEINDMTVTIEHDGKKGLEAALNEPFDLIILDVMLPTMD GFEICRAIRKKSKRRS >gi|307679024|gb|GL456773.1| GENE 50 48301 - 49782 1706 493 aa, chain - ## HITS:1 COG:CAC0317 KEGG:ns NR:ns ## COG: CAC0317 COG0642 # Protein_GI_number: 15893609 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 149 488 157 493 498 206 37.0 1e-52 MTIKRRFFISYISAIIITLASVLAFLSLASYITLGTVPSLPQAYRMMNKQRPLTANEEES YLALDQLLKKSPKLLDTPLSKELKETIQTIEAKGLSVIIRKNARFPYYSDNLVEKSLSVH IPNYEMNNIMPTGTLDNAGRLYHYVKSDFHYLDGSNGSFIVLKRESSLFEFFTRWIIWMI LLIILVAIAAAWLINKRLTKTTIEPLEALEKATKTLGKDAQKENPFTPTSHQTVSTEVKQ LQLSFEQMWQDLEEANAEREKYEANRKELIANISHDLKTPITSIIGYVEGLMDGVANTEE KKQRYLTVIHEKSLGLNDLIEELFLYSKLDLDRAVFTVEKTNFTRFIAHILEEYRLEQEL VITSVLPTEALYVQMDPTQMNRVITNLIQNSIKFADPTKEQLAFTISLTHNQTDLVLTIT DNGIGIDKKELPYLFERFYRVDKSRTPTVKGSGLGLSIVKQIIDYHQGTITVTSKKGDGT NVIITLPLLEDEK >gi|307679024|gb|GL456773.1| GENE 51 49968 - 50945 1268 325 aa, chain + ## HITS:1 COG:no KEGG:EF0374 NR:ns ## KEGG: EF0374 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 325 1 325 325 503 99.0 1e-141 MKKKKIFSALTLLTFSTLLIAGCAGGANSATDKSSAASSSTAVSSSAEAAKEQSKGQELT EILSSTDWQGTKVYDKNNNDLTAENANFIGLAKYDGETGFYEFFDKETGETRGDEGTFFV TDDGEKRILISDTQNYQAVVDLTEVTKDKFTYKRMGKDKDGKDVEVFVEHIPYSDEKLTF TNGRKDLETETGKIVTSEPGDDILGATLWNGTKVLDEDGNDVTEANKMFISLAKFDNKTS KYEFFDLETGKTRGDFGYFQVIDNNKIRAHVSIGDNKYGAALELTELNDKRFTYTRMGKD NNGKEIKVFVEHEPYEGDFTPDFTF >gi|307679024|gb|GL456773.1| GENE 52 51130 - 52095 1232 321 aa, chain + ## HITS:1 COG:no KEGG:EF0375 NR:ns ## KEGG: EF0375 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 321 1 321 321 586 99.0 1e-166 MKKKVLSSITLVTLSTLLIAGYASPAFADHAANPNSATANLGKHQNNGQTRGDKATKILS GTDWQGTRVYDAAGNDLTAENANFIGLAKYDGETGFYEFFDKNTGETRGDEGTFFVTGDG TKRILISRTQNYQAVVDLTEVSKDKFTYKRLGKDKLGNDVEVYVEHIPYHGKKLAFTNGR EALTNQTGKIVTNKSGDKILGTTLWNGTKVVDKNGNDVTAANQNYISLAKFDPNTSKYEF FNLQTGETRGDFGYFQVVDNNKIRAHVSIGTNRYGAALELTELNNDRFTYTRMGKDNAGN DIQVFVEHEPYQGTYHPAFTF >gi|307679024|gb|GL456773.1| GENE 53 52314 - 53357 1119 347 aa, chain + ## HITS:1 COG:no KEGG:EF0376 NR:ns ## KEGG: EF0376 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 347 1 347 347 656 100.0 0 MKKKIVGTITLLALSALLVGGAGGALTAEAYVPQSVDNPNNLGDLPEYLRSVGIRQDEGL SEKDWAGTRVYDRNGNDLTDENQNLLHAIKFDATTSFYEFFDKETGESTGDEGTFFMTAG ITDVSRLVIISETKNYQGVYPLRTLYQDTFTYRQMGKDKNGNDIEVFVENKATSGPVYGR PQPYPNNRPRTLEFTNGRRAMTEQTGQIDVNRQGDEIIGKTSFDGTPQLLWNGTKVVDKD GNDVTSANQNFISLAKFDQDSSKYEFFNLQTGETRGDYGYFKVGNQNKFRAHVSIGTNRY GAVLELTELNDNRFTYTRMGKDNEGNDIQVYVEHEPYQGTFNPEFTF >gi|307679024|gb|GL456773.1| GENE 54 53531 - 54334 987 267 aa, chain + ## HITS:1 COG:PA2498 KEGG:ns NR:ns ## COG: PA2498 COG0666 # Protein_GI_number: 15597694 # Func_class: R General function prediction only # Function: FOG: Ankyrin repeat # Organism: Pseudomonas aeruginosa # 75 263 19 204 210 148 44.0 9e-36 MNKKILMGLLSVVTIPLLSACQGGETPSAASKNSQTVTTQSSAKTESTSTTRSVAQTTSK EEVKEPMKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEI AKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKNATPDLNKHNRYGGNALIPAA EKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIK DNSGRTAMDYANQKGYTEISKILAQYN >gi|307679024|gb|GL456773.1| GENE 55 54386 - 55597 1655 403 aa, chain + ## HITS:1 COG:ECs0373 KEGG:ns NR:ns ## COG: ECs0373 COG0402 # Protein_GI_number: 15829627 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Escherichia coli O157:H7 # 2 401 53 455 460 229 35.0 8e-60 MNYWLKNVRIETGYQKEGDWLSGTVTKEVAIEVTDGVFTKIIPNEELVEEPGLTIIDGHH QLILPGLIEKHCHFDKSKLGVPWYPVTPAKSIVERVEAEIPYLDSLELSLTERANHLIDL ELPHGATAFRTHVDVEPMTDLRYFDEVQALAQTKPFAVEIVVFPQHGLLRSDSVELVDQA LAKGADFIGGVDPYSLDGDYKKSLAETFRLADKHGVGVDIHLHDRHEAGTTTIKEIIRLT KEYGLQDKVFISHAFGLNDFIGEERDEVYDALAAEKIHINSSVPITPNTIPPIMELLRHG VNVHLGCDNIYDCWSPYGDGSLQEKLARLGELFNVKDQDALTQLLGLVTDGVTTLDEQGQ ANWPQVGAEATYLLTEAECAAAFVARQTPVEISVVKGTTLYQK >gi|307679024|gb|GL456773.1| GENE 56 55707 - 56126 346 139 aa, chain - ## HITS:1 COG:SP0889 KEGG:ns NR:ns ## COG: SP0889 COG3654 # Protein_GI_number: 15900772 # Func_class: R General function prediction only # Function: Prophage maintenance system killer protein # Organism: Streptococcus pneumoniae TIGR4 # 6 112 4 110 137 92 47.0 2e-19 MKSIYYLSADDLFQMNTFLIQTYSPAEQIGIKDRNALEMASNQPAQFVFDVDLYPTIEEK AAILMINIATKHCFYNANKRTAVMATDLFLQLNGYDFQLDTQEGVDLLVFIATYRSDFDQ LKNDVSKVIRAKLNHTSSH >gi|307679024|gb|GL456773.1| GENE 57 56123 - 56386 309 87 aa, chain - ## HITS:1 COG:no KEGG:EF0380 NR:ns ## KEGG: EF0380 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 9 87 1 79 79 100 98.0 1e-20 MYTKGGLLVEIKERKLRKVGNSVVMTLSKEFLESIGATATDTVYVDEEKLKDIIVKKNMS EHQKKLQQMMENSKQKHNELYKELVTK >gi|307679024|gb|GL456773.1| GENE 58 56463 - 57275 863 270 aa, chain - ## HITS:1 COG:SA0310 KEGG:ns NR:ns ## COG: SA0310 COG0657 # Protein_GI_number: 15926023 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Staphylococcus aureus N315 # 14 256 19 259 275 104 29.0 1e-22 MKNNQTLANGATVTIYPTTTEPTNYVVYLHGGGMIYGTKSDLPEELKELFTSNGYTVLAL DYLLAPNTKIDHILGTLTETFQLLNEEIIQNQPFGLCGRSAGGYLMLQLTKQLQTLNLMP QFLVNFYGYTDLEFIKEPRKLLKQAISAKEIAAIDQTKPVWDDPFLSRYLLYHYSIQQAL LPHFYGLPENGDWSAYALSDETLKTFPPCFSTASSSDEEVPFRYSKKIGRTIPESTFKAV YYLEHDFLKQTKDPSVIALFEQLDSWLKER >gi|307679024|gb|GL456773.1| GENE 59 57250 - 58842 1059 530 aa, chain - ## HITS:1 COG:BS_yunI KEGG:ns NR:ns ## COG: BS_yunI COG2508 # Protein_GI_number: 16080295 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Bacillus subtilis # 1 520 1 528 531 103 22.0 6e-22 MKLRELLSIGDLKKGKILTKEIGLDNEVDSAMVLEAIDIENWSRKNQLILTSFYALHDLP EKELENFFVKMRRIGISGLILKTDRFIKMIPEWFIELCFNYEIPLIKITQDISYEKILFT IYEPLLNYQSHVLRTYYDVRQRFTKLERHYPTVETIMQEFYDIIKLPFALKMLDKHLEIS DGDLPHDAIVLSREKLKNSEFTKNDYSLLTLYSHANPKKQLALEVSIFNSYSTNCLLLVY LQDEKVKETDLVIIENAIDVLQEKFNTENLLKKERYTRLNNLADAILQNTPQNPDELNSL LREVQMQELDSYQAIAFSTKDTNTQLMKERIIALLRTLRVKSIFFDQLNYSAVLFNFNES DGKITKLQLSRLLAELLEENDTLTVAVSSLKSREGIKELLIECLDILRFNETFYNGPIVT LADIGVFKNFIREDQLENLDELIPRALYQLAENNYDLFETLYSFFQNNRNYKQTSEAMFL HSKTIRYRLNKVEQLLDIDLANPLQLLNYEIATYIIKMRRRALEKQSNTR >gi|307679024|gb|GL456773.1| GENE 60 58965 - 61976 4113 1003 aa, chain + ## HITS:1 COG:ECs0580 KEGG:ns NR:ns ## COG: ECs0580 COG0074 # Protein_GI_number: 15829834 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, alpha subunit # Organism: Escherichia coli O157:H7 # 1 579 1 555 555 369 38.0 1e-101 MLHTVILKNNYQDSINLMLLTNKINALDGVTMSQIMMGTDANKDILNNTNLLTDEANSAS ANDMMIVVDSEKENIMEEVMPAIDEFLDDLSAKGTSEEAQAATSWSEAFDLLPEANVALF SIPGEYGAPEMERALKNDLHVFSFTDNVSIEDEVRLKKLAHEKGLLMMGPDCGTGIISSI PIAFTNVVSPGNIGVVGASGTGIQEVTTIIDRLGGGVVHAIGTGGRDLSDKVGAITVKDA IVALENHEPTDVITVISKPPAKEVRDEVVELLQSISKPVVAIFLGEKPTSHEGKVYLAHT LEETAKIAVDLANDVAVKKNYFEALAKPAVPTLPEDKVVKGLYSGGTLASEAGMLISEAL DLGGLVKAEGYVLKSHGYEVIDLGDDMYTQGRPHPMIDPDVRIEKIREYAQDEKTGIILF DVVLGYGAHEDMVGALLPAIEEARATAKEAGRDLYFVATVCGTTKDPQNYQSSVDRLKEG GVLVAESNAKAVQLALLLKGIEISEDDKEVVAYNGPTVDVPKPGEKVMELLTTKPRIINV GLQSFTESIVDYGGETVQFNWRPRANGNKKMIKILDALEDYSEQIEAENHKVTDKIKNAQ PFLVDVVPAKSVIPELNDDAQKTLLHAGPPIQWSEMTGPMKGACIGAALFERWADNEEDA LKIFEAGEVRFIPCHHVKAVGPMGGITSGNMPVFVVENRLEGNEAYCILNEGIGKVLRFG AYSQEVVDRLDWIKDVLGPTIAKALKLSEEGLNLNVLIARSITMGDEFHQRNIAASLNFL KELSPLIIKTDIPEDQKYEVIKFLADTDQFFLNVMMATGKAIVDGARKDTNGTIVTTMTR NGVNFGVRIAETGDQWHTAPVNTPKGLYFTGFSEEDGNPDVGDSAITETVGVGAMAMVAA PGVTRFVGAGGFEDALATSNEMAKICEGHNPTFSIPTWDFQGTCLGIDIRKVVELGITPI INTGIAHKNAGVGQIGAGTVRAPLGCFEKALEAYAEKLGITVE >gi|307679024|gb|GL456773.1| GENE 61 61969 - 62802 568 277 aa, chain + ## HITS:1 COG:no KEGG:EF0384 NR:ns ## KEGG: EF0384 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 277 1 277 277 467 100.0 1e-130 MNNQLVISDYIFPIHQYGKMGTIHSVFERSFNLKVQDQLINVANFHNYLSSFGMFLPDQL FQEIFPYVQQGNKVKITENQLTFYSTVGVKTIQLTPAEVVSLNITHFKLEKDQLRLLRDR LLARNLERRIGLPLDERAKHIFKKMSQKQKVWTLSEWQEVTNYLIGRGKGLTPSGDDILV AYQTILFILADERAAALAATLSAANLSTTDVSKGYIASSAKGYVNSLLYQLLLDLENHRD NRVDENIDRIIQIGHSSGKDMSFGMLLALQSVELDEK >gi|307679024|gb|GL456773.1| GENE 62 62812 - 64065 1529 417 aa, chain + ## HITS:1 COG:STM0520 KEGG:ns NR:ns ## COG: STM0520 COG0477 # Protein_GI_number: 16763900 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 16 405 11 399 415 219 34.0 9e-57 MENSKKNQAVQVSNSYWIKVVAIFFVGWILMYATRTIFNPVMGVIGEQFGLSNTQLGLAN SIFFLTYAVAQIPFGMIGDKIGRKLVIAVGFIVLAISTYFSGLATTFVMFLVIRAIAGIG QGAYYGPQYALSTEAIPASKRTIGNAIINSGMAFGTSGGYLLSSKLVLENGEHWSKPFFI MAIPTFIVGILFYTILKEKVIRPGEEAARAAAEEGPQEKISLKEIFSNRNLLAAFILCFT SIYANFVIITWLPQFLIAERGFTGASVGFISSLVPWASIPGALIFARLNDKTGATKKLVF TLVPLAILSVFAIAFVTNRTLLISVLILYGLTGKLALDPIMVTFVTKHAPKAALGTTLSA YNFIGMSGSILAPYVTGYLADTAGSMQVGFYLSCVLLVIGLLAFAFLAKDESKPKLG >gi|307679024|gb|GL456773.1| GENE 63 64200 - 65138 1248 312 aa, chain + ## HITS:1 COG:L92850 KEGG:ns NR:ns ## COG: L92850 COG0549 # Protein_GI_number: 15674015 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Lactococcus lactis # 5 308 6 312 314 305 53.0 8e-83 MSLNVIALGGNAILDTDPTDEGQKAVVNHAAKYIAEFVAKGEQVIVCHGNGPQVGNLLLQ QKAGESEKNPALKLDTCVAMTQGSIGYWLQNALTNEFEKRNIAKPVISVVTQVRVDKEDP SFKKPSKPIGPFYTKEEADAEAAKDGSTYVEDAGRGYRKVVPSPMPKEIVEKEAVRALVE ADVLTICSGGGGIPVVAEDGQYVGVEAVNDKDFSARVLAENVDADRLIILTGVDNIYINY NQPDQKALEQISVAEAEEYIKEGHFAAGSMLPKIEAALDFVKGDDKRKAIITSIENLENI DKEAGTVISQKG >gi|307679024|gb|GL456773.1| GENE 64 65145 - 66365 995 406 aa, chain + ## HITS:1 COG:RC0223 KEGG:ns NR:ns ## COG: RC0223 COG1301 # Protein_GI_number: 15892146 # Func_class: C Energy production and conversion # Function: Na+/H+-dicarboxylate symporters # Organism: Rickettsia conorii # 9 403 6 399 399 186 29.0 9e-47 MKKPSMITQIAIAVVVGILVGLLIPASGNYLKIVGDVFLRLMQMAIPILILGQIVQAVGS INPKELTSLGGRTIAVFGISSLAAALWGVLMAVIFNPGYGVKMTGFQDASIKAQEISITD TILNFVPKNIFDSLTQGSIIQIIVFALFFGLALNKYLQSHPETQLFQIIVDFNEVIITVI RYVMYLAPLGIFALIASTISHLGLQIILPLVKYLLVYGLGTILFLGIWILVITLYCKVSP LRLITNMKNMSVMALATTSSAITLPVALEETETKLGLSKRITNLVLPLGMSLNSNGSAMH MAFTVMTIAQMYQLDFDITKMIYLAITATFVSLANAVVPGAGLVSLAVIVPQMGLPIESI AIFAGVEWFVGMLRTILNVNSDVYSAILVAKSVDEIDYTVFNSSNK >gi|307679024|gb|GL456773.1| GENE 65 66455 - 67516 1287 353 aa, chain + ## HITS:1 COG:ylbC KEGG:ns NR:ns ## COG: ylbC COG2055 # Protein_GI_number: 16128501 # Func_class: C Energy production and conversion # Function: Malate/L-lactate dehydrogenases # Organism: Escherichia coli K12 # 7 353 3 349 349 402 55.0 1e-112 MEEMVVVTPEKLEKLMKQKLEAAGLHSEHAEEVARHLTFADASGIHSHGAVRMDYYAERI AKGGITIDPELSFEKTGPSIAIFHGDNGVGQFVCNEALAAAVDLAKESGLAYVGVSQTSH SGTLSYYVKKAAEQGMVALSMCQSDPMVVPFGGTSNYFGTNPIAFAAPRAGHEPVVFDMA TTVQAWGKILDARSRDVEIPDTWAVDEKGQPTTDPYEVRGLLPISGPKGYGLMMMVDVLA GSLLGLPFGKHVSSMYADLTEKRNLGQMFLIIDPSRFTDSERFKENINQMVEELHSVPTA EGFQQVYYPGEIGQLNYQKAMSEGIEIPQSIYDYLVSEIVHYDKYGGQGAFAK >gi|307679024|gb|GL456773.1| GENE 66 67582 - 68937 1888 451 aa, chain + ## HITS:1 COG:no KEGG:EF0389 NR:ns ## KEGG: EF0389 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 451 1 451 451 662 99.0 0 MKKSSKVALIFAFLVSIFVPVAAFADEIGDVVAPTGIMALVVIIPLIVVLVLLFMKVDMI IAGLIGGVLAMLIGGIGLEEANKQMLEAIPMMLGITVPIINSAVAMAVFKAGSYSAALTL AKRGTKGKVEYVSAFIVILLAAATYMSGIGGGSAMVIAPLAFAAVGVVPELIAAMSLAAA VSFTTSPASLESSIVSKLGDISVGSYVSTMRPYWLFFVALAIVLAFWGTKHRNVGFKESA DDEFDKKSNGELFKITLPAIFLLFAVIFGPIVNDLIGFAFFTPLVYMILTLVLIFLCTDF SMNKSVEAMVDGSTYILTRLFQVGIFLAFINVIAETGTFAVIAGVAENAPAFIVVPVAIL TGILIGIPAGAYVGSVLTLVLPVAVSLNFPPLALGFVAMGVGLGSQMSFVNITMQALSSG FQIPILDVVKGNVKWLSIASVLLLVIGLIFG >gi|307679024|gb|GL456773.1| GENE 67 68962 - 70185 1925 407 aa, chain + ## HITS:1 COG:SMa2371 KEGG:ns NR:ns ## COG: SMa2371 COG0402 # Protein_GI_number: 16263735 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Sinorhizobium meliloti # 2 403 3 407 432 239 34.0 5e-63 MDLLIKQVRLQDGEALQDVAIKEGKIIEIAPVITGDAKEVIEADGRVLIPGFVESHLHLD KALIADRKPNKSGTLKEAIEVTAELKPTFTEEDIYDRAKRALEMLIVHGTTALRTHAEFD PAQGFTGFKTIMRLKEEYKELIDMQVVAFPQEGIFKAPGTEQMMYEAMDMGADVVGGIPY NDAPAKEHIDLVFEIAKKYDKDVDLHQDFADEADDMSIEYLCEKTIAEGYQGRVSVGHLT ALHALPEAELAPIIAKMAKANISVMALPATDLHLGARGDQYNVRRAVTPIRKLRDGGVNV CIATNNIRNAFTPYGTGDIVQTAMLAIPVGHLGGADDLKTVLPMVTTSPARAMGLEGYGV AVGNKADLVLLDTKVVEHAIIDIPERLYVIKNGRVTVKTDKKVEIIR >gi|307679024|gb|GL456773.1| GENE 68 70633 - 72927 1701 764 aa, chain + ## HITS:1 COG:no KEGG:EF0392 NR:ns ## KEGG: EF0392 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 764 1 764 764 1434 98.0 0 MKRSKWKELIVTGICHILVFPILIQTTVFAETLPSTKQVREGTNHSLTAEKAKSEQPQTK DKLHDEEPLALPKSELIDNEANVTSQTIRERIETPNLTYRYGFINEEGQPVNANEILLQY HSWQGNSPNGINVWEGESQPVTASTVANLKEVVIPSEKVAVYSDMSTVLAASNQTFFLPR YYTSLSLYNKKGEIDPDYPLPTISDASGNQYPTTISQFELEKMSAQQYSQKTGVTFNISE SQKLIVPLYNQVKIDSSNQSGLLNYFKFSGPVYYHVTNRKVTEHFVDTQGKPIPPPPGFR QGKQTLIERDPYAFKQKDLLPSSYEIDSKTYQFQGWYKGKTKPENLEKSVTPSYDITYDD NDDLTVVYKEIPQKNYTFEDVNGVEIAPPSDFIQDHQQPITTDGFRYLAGKKLPQQYSVN GKTYLYQGWYQDKTKQESLEKTKRPINSPVFNEMNAITAVYKEITAKAEMQIEGLVKVMP SGYIQIWQIMLTNVGEVPLKKINLKPASGWSPGLARPIQVTIRVGSEPNKIVPITDENWR VGIALNTEVPIGQTATIMMTTIATGEPDQVLQAAVEMNGNFSAVHAADTVRIQPKNQEIV APDEEGFISTPTFDFGKVAISSNTQQHGLKQAADYYENGQENPYLRLKKSQPNWALTAEL SPFEGRVDQLSSMTKLLLGTTNVSGFIQYNQPTETKVALGKTTAIQLVANGVASHIVANG QFDESDVYQFDFSFDQIKLEIPANQGRKDQAYQAMVTWNLVTGP >gi|307679024|gb|GL456773.1| GENE 69 73384 - 74751 1686 455 aa, chain + ## HITS:1 COG:SP2216_1 KEGG:ns NR:ns ## COG: SP2216_1 COG3883 # Protein_GI_number: 15902020 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 270 1 269 270 104 37.0 3e-22 MKKRLFASVLLCSLTLSAIATPSIALADNVDKKIEEKNQEISSLKAKQGDLASQVSSLEA EVSSVFDESMALREQKQTLKAKSEQLQQEITNLNQRIEKRNEAIKNQARDVQVNGQSTTM LDAVLDADSVADAISRVQAVSTIVSANNDLMQQQKEDKQAVVDKKAENEKKMKQLEATEA ELETKRQDLLSKQSELNVMKASLALEQSSAESSKAGLEKQKAAAEAEQARLAAEQKAAAE KAKQAAAKPVQAKAEVKAEAPVASSSTTEAQAPASSSSATESSTQQTTETTTPSTDNSAT ENTGSSSSEQPVQPTTPSDNGNNGGQTGGGTVTPPTPEPEQPTPAPSADPTINALNVLRQ SLGLRPVVWDAGLAASATARAAQVEAGGIPNDHWSRGDEVIAIMWAPGNSVIMAWYNETN MVTASGSGHRDWEINPGITRVGFGYSGSTIVGHSA >gi|307679024|gb|GL456773.1| GENE 70 75159 - 76286 1500 375 aa, chain + ## HITS:1 COG:lin0838 KEGG:ns NR:ns ## COG: lin0838 COG0620 # Protein_GI_number: 16799912 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase II (cobalamin-independent) # Organism: Listeria innocua # 1 375 1 365 367 363 49.0 1e-100 MSSQIPFTVDHVGSFLRPETIKKARKKVQAGALSQAELRLIEDEEIKALVAKQKAGGLRG ITDGEFRRGFWHIDFLEGLNGVTGYIPETGYNQTFHGKAAPAYNIRVVDKISFPAQHPFL EDFSFLKEVVEVGDGTVAKATIPSPTMILRQEILSNDGTSRIQTIYPEIGDFYKDLAQTY KDAIAAFYERGCRYLQFDDTNWAFLADQTKQEELRAKGIQPEEIAQVCTTIINEALAGKP EDLTVTTHICRGNHASSWLFSGGYEPIAKELFATNYDGFFLEYDSDRAGDFSPLRHWQNN GSKVVLGLVTSKFPELEETEQVKARIEEAQQFVPLENLSISPQCGFASTEEGNRLTEKEQ WRKVQLLQEIAREVW >gi|307679024|gb|GL456773.1| GENE 71 76338 - 77522 1253 394 aa, chain - ## HITS:1 COG:SA1192 KEGG:ns NR:ns ## COG: SA1192 COG0628 # Protein_GI_number: 15926939 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Staphylococcus aureus N315 # 6 383 18 393 402 265 35.0 1e-70 MDKESTKWIRFLGGKNLLYTLTILCLIAVTIFLFNTVSFIFKPIFVIFSAVLGPVLFGII LFYLLNPMVKRLEKKIPRVWAIAILYVLIIALLVLAGLQLFPIIQDQTEELIKQFPSFWK STLQTVQEFMAKTPFAKDLESANESINQLWGKLANSFKDFAGDYLQTGAQGLGSVFSAVS STFLTLFTGPIIAFFLLKDKEKFYRFVKGIIPPAFRPDFDEYSQIANIQIGDYLKGQVIA SLVLGIMYWPAFLLIGLQFGSILALAAGILCIIPYIGPFIAFIPGLIIAFQDSTFMVVKF VIVWFAIQLIHGDFVIPRVMGDKLKVHPITILLVLLVMGELFGLMGVIFGIPMYCLVKVT VIYLFRKFKQRYNRFYGDNGEYEHTNFTKDQYLK >gi|307679024|gb|GL456773.1| GENE 72 77538 - 78053 531 171 aa, chain - ## HITS:1 COG:no KEGG:EF0397 NR:ns ## KEGG: EF0397 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 171 1 171 171 248 100.0 6e-65 MFQTFRENFRRHTLLRDAVFIVIGSAIVFNPGAFFQFVGYLIAGYLMLLGLINIYDDYKI KKQTGSWGLGFVTGLIFVVLAVAFLFFAPVIVSILPFLLGISIVINGLVQLTFALNTRQT GALIYSILVLIAGAVLVFNPFKSLLVLMQVFGFILIFMGVIEIIGHFRNKA >gi|307679024|gb|GL456773.1| GENE 73 78246 - 78932 782 228 aa, chain + ## HITS:1 COG:SP0858 KEGG:ns NR:ns ## COG: SP0858 COG3819 # Protein_GI_number: 15900742 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 1 220 1 221 229 128 38.0 8e-30 MDLLPLLGVLIVIVGFALKFDAILIVMVALIVTAFTGGLGLTSMLETLGTTFVNNRGMAI FIIIMLATGTLERNGLKESAATLIKRFKKVSAGVIIDIYGVFRIIFAAFNVSFGGVAGFV RPIILPMALGTIESKNLPMVPEYEEELKGMASAMENICWFFGQVLFVGGAGALLVQSTLK DLGYEVTLGKLALVEVPVALVALISASIYFTLKEKRLRKKYYGQEGLK >gi|307679024|gb|GL456773.1| GENE 74 78929 - 79873 1125 314 aa, chain + ## HITS:1 COG:SPy0507 KEGG:ns NR:ns ## COG: SPy0507 COG3817 # Protein_GI_number: 15674612 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 15 313 8 305 308 207 41.0 2e-53 MSFFTDPSIDLSAKLLEVLYIFMGIILLYTSFRSFRDKTNQHAYGTSLFWGILGILIGFG RFIPPVACGVLIFVMTIPAILQKVTKGESRLPSKEYMEKMSQKLGMKIFIPALSIGVFAI LFATLTTLGALVGVGVGVFVAIFIMMFFSKNNTPKVFFDDAAEMLETVGPLSTLPMLLAC LGAVFTSAGVGEIISKGVSAVVPAGNVNVGIIIYAVGMVIFTAIMGNAFAAITVMTVGIG VPFVFSLGADPALVGMVALTCGFCGTLLTPMAANFNIVPVAMLEMKDKYGVIKNQLPIAL FMLIFQIVYMILFK >gi|307679024|gb|GL456773.1| GENE 75 79889 - 80530 893 213 aa, chain + ## HITS:1 COG:SP0860 KEGG:ns NR:ns ## COG: SP0860 COG2039 # Protein_GI_number: 15900744 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) # Organism: Streptococcus pneumoniae TIGR4 # 1 213 1 214 214 237 55.0 1e-62 MKVVVTGFDPFGGEAINPAFEAVKKLPAEIAGAEIIKVEVPTVFGTSGEKVAEAIETHQP DMVICVGQAGGRQTVTVEKVAINLAEARIPDNAGQQPSDVPLVEDGATAYFTNLPIKAMV KNCHDHQLPAAISYTAGTFVCNDIMYHLLHLINTKYPTIRGGFIHVPFLPEQTIDKPTFA SMSLEAITDSLFYMIEAAVKTQEDIQLQGGTTH >gi|307679024|gb|GL456773.1| GENE 76 81042 - 82445 1670 467 aa, chain + ## HITS:1 COG:NMA0715 KEGG:ns NR:ns ## COG: NMA0715 COG1757 # Protein_GI_number: 15793692 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Neisseria meningitidis Z2491 # 14 458 14 458 459 288 36.0 1e-77 MKEKQKKKTVSVREASIVLLIIVAAIATGVIGLKISPNITILFVIALILGYAMFRKVPFD QMHKGIVDGLKPGIIPIFIFILVGALIAVWIQAGIIPTIMVFGFKMISVKWFVPSVFIVC AIVGSAVGSAFTVMSTIGIAFFGIGSTLGLNPALVVGAIVSGSVFGDKMSPLSESTNLAA AIVEADLFKHIKNLMWSTVPAFIVSLILFMILGQTYANTSLTEVVQVIQVLEDHFTISIW SLLPLALMLICAWRKIPAIITILLNIIVAVIMIIIQNPKVSLQALGNTLENGFVSQTGNA QIDQLLSRGGIMSMMPTVALIILTLSLGGLLMELGLISAVMEVVSQKMSSTPKLILSTLL TGIGVNIFIGEQFLSVILPGNAFKEVYKKEGLDPTVLGRTLEDGGTVINYLIPWGIAGSF VAGTFGVPTLTYLPFVFFSLLSPVFSMVSAFTGLGIKRLSAEPVTEK >gi|307679024|gb|GL456773.1| GENE 77 82597 - 83031 562 144 aa, chain + ## HITS:1 COG:L102062_1 KEGG:ns NR:ns ## COG: L102062_1 COG1846 # Protein_GI_number: 15673454 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 3 109 1 107 160 100 55.0 6e-22 MSLSLREVSQLLCQLKVLDQKITKVFEEQVGLSLTRYELLMILKERQPCLQTEIQEHLKI DSGAVTRHLKILEEKQYVTRQRNPENNREVLVHLTEKAQQELQQCTAKQQTVTEIIPSTF TKDDCRQLKELLTKLDQSITTKEV >gi|307679024|gb|GL456773.1| GENE 78 83036 - 83671 865 211 aa, chain + ## HITS:1 COG:L102062_2 KEGG:ns NR:ns ## COG: L102062_2 COG0778 # Protein_GI_number: 15673454 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Lactococcus lactis # 16 211 1 196 196 290 73.0 2e-78 MTTYTTNDFSEIVFGRKSVRVYDETHKISHEEMLTMIQEATTAPSSVNMQPWRFVVVESE AGKEKLKPLIRFNTRQNETSSAMLLIFGDLNCHERGEEIYNQAYASGKMPKEVRDQQLAA IIPHYESLSREQMNDIVKIDASLAAMQFMLVARAHGYETNPIGGFESEKLAETFGLDQER YVPVMILSVGKGMETGYESVRLAPEKITTFE >gi|307679024|gb|GL456773.1| GENE 79 83714 - 84547 699 277 aa, chain - ## HITS:1 COG:lin2847 KEGG:ns NR:ns ## COG: lin2847 COG0561 # Protein_GI_number: 16801907 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 1 277 1 277 279 303 54.0 2e-82 MAIKAIVMDIDGTLLTSEKKISPKTRQALVAAQKQGLSLILASGRPTNGMRPLADELEMA HYNGHLLSYNGACVTHHGSQQQLFNQTISKSLSQQILEHLKQFDVIPMINDETFMYVNDV FHNTLHLETGDFNIIEYESRGGNFQLCEWHDLAARLNFPLNKILIAGEPAYLQKYHEAIY APFKETVTAAFSAPFYFEFTAKNIDKARSLEKLTLQLGITAEEVIAFGDGHNDYTMLEWA GTGIAMENAVDELKSIATEVTLSNDNDGIAVALANFL >gi|307679024|gb|GL456773.1| GENE 80 84731 - 86473 1449 580 aa, chain + ## HITS:1 COG:SP0394 KEGG:ns NR:ns ## COG: SP0394 COG2213 # Protein_GI_number: 15900314 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannitol-specific IIBC component # Organism: Streptococcus pneumoniae TIGR4 # 22 570 11 582 589 372 38.0 1e-103 MKEKEMHSLFFKHKFVKVTPYLRRFGHRLSGMIMPNLSIFIAWSLLSLVAGYTTGNLRLA LSEVETIMIRVVLPILIGFTGGKMFEEQRGGVVAAIATVGVIVSTDVPQLFGAMFIGPLA GYTFAKIEQILLPKVKEGYEMLTKNFLAGIVGGLLCCFGILVVAPAVESASFWLYQFSSW LIEANLLPLVHVFLEPLKVLFFNNAINHGLLTPLGLEGASQTGQSILFLLETNPGPGVGV LVAFLLFGPVGQRKTAGGATMIQLIGGIHEIYFPFVLMDPRLFLAVIAGGMSGTLVFQIF NVGLSAPASPGSLVAILANTPTDARLAVFCGIFVSFLCSFAIASLLLKRQRGIEPVSIIK MKEEDQVETVTPNYQQILFVCDAGMGSSAMGASLLSRQLKAVDLEIPVTYQSVHQMKWQP KTLVVIQAELKQLAQKYVPEKDMVSVQNFLEIKSYYPQVLAKLTASSQEQSSLGSESTGT NPTKQRQKLVFLYAENVRGSQTMGMELLRQQAAKQGVAIEVSKEPLETVFFTKETTYVVT RELAQAYHLDLTQQNLYVVTSFLNKKEYQEWLEGGADRCF >gi|307679024|gb|GL456773.1| GENE 81 86464 - 88497 1924 677 aa, chain + ## HITS:1 COG:BS_ydaA KEGG:ns NR:ns ## COG: BS_ydaA COG3711 # Protein_GI_number: 16077483 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus subtilis # 1 676 1 689 694 234 27.0 4e-61 MFLTTRETVLLTELVNSPTPVSVNRMMNLLKVSRRTVYRELENLETSLASMGATLEKVAR GRFSIQADEAAMTEIQAAILGEETQELSTLARQHAILLTLLQTKEPVSMHYFLETYCISN TTFYADIKQLETRIARIPLTISRNQGYEVTGSEKYRRLLMANILSMEINEYQFFHFTELT TNDHFFFQFIHAEHLAFAQKIVQPEVETLFPALSDRKLQHLILMLTIAMDRVTAGFYLAD ETYTGQMNKAFLNCSKRLFSKVAAETKQLYAVSEIVFFASLLSDFSNSFDEDFFDEHFDT QLAYAVKQLIEAVSQETEVNFFEDTNLYKMLLTHLSGVFSRAVLQEEDLTNPILERIMNQ YQEIAAALRQALPQIFPQKNLSEEEIAYMVLHFANSLERSPKIMEVDIAGFSPSGLASTS MLEMRLRRYFPFINQIHFFRIADLGKVNVEENYDLVISTSLLPGYNGKYKLISPLLLDDE IRQLKEEFKRISHEKRSLRKAPVKKIGGEESYETVVAFMEEISKLLETFFIADLNNQADL AETVQQALAQLSADLITDSAIVCQQLMKRYEQAPIGIPQTEMALFHTSSTAVTQPVFCIF NLAQPLMIEGMDKKPMQLQRMLLMLAPMPIDETIGKILGKISGAIIMNDLNTEIFHSGNE AIVYQLLSSLLIEEMKG >gi|307679024|gb|GL456773.1| GENE 82 88508 - 88942 461 144 aa, chain + ## HITS:1 COG:L32907 KEGG:ns NR:ns ## COG: L32907 COG4668 # Protein_GI_number: 15672005 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol/fructose-specific phosphotransferase system, IIA domain # Organism: Lactococcus lactis # 3 139 2 139 143 125 44.0 2e-29 MFEITAEQIMLNQSYASWEEALAASGELLLKNQLVTPDYVKAMYQRQQKVSVYIGNFVAL PHAEGQDEQVLKEGICFIQVPDGVNFGTEADRKIATLLFVVALKSQRQLSMLQELAFFCS DLENIQRLSDCQTIDEAQKILAQA >gi|307679024|gb|GL456773.1| GENE 83 89024 - 89293 138 89 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|255970965|ref|ZP_05421551.1| ## NR: gi|255970965|ref|ZP_05421551.1| LOW QUALITY PROTEIN: predicted protein [Enterococcus faecalis T1] LOW QUALITY PROTEIN: predicted protein [Enterococcus faecalis T1] # 1 31 21 51 51 62 100.0 9e-09 MYEIVTKILVPIFVGIVLKLVTIGWKNRTRNKQVASSRCCLNSKKDTLLLIGCLFSASMH DFVTSYLKFIIGPIFCQGIFLSFLFNLLN >gi|307679024|gb|GL456773.1| GENE 84 89539 - 91311 2157 590 aa, chain + ## HITS:1 COG:SP0394 KEGG:ns NR:ns ## COG: SP0394 COG2213 # Protein_GI_number: 15900314 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannitol-specific IIBC component # Organism: Streptococcus pneumoniae TIGR4 # 7 584 2 585 589 605 58.0 1e-173 MEQVPEKNKVSIKAKVQRLGSTLSSMVMPNIGALIAWGVLTALFIPDGYLPNKAFATMVG PMLTYLIPLLIGYTGGKVIAGDRGAVVGAIATMGVIVGTDIPMMLGAMIMGPLGGFTIKK FDQYFQHRIKAGFEMLVNNFSAGLIGFALALLGFSAIGPIVDALTAAMARGVEIILNAHL IPLTSIFIEPAKVLFLNNAINHGILTPLGTEQVLSAGKSILFLLEANPGPGLGVLLAFMF FGKGAAKSSAPGAIIIHFLGGIHEIYFPYVMMKPLLFLSVIAGGATGSLVFQTLDAGLRA PASPGSIIAILAMTPMGSYLPVILGVLAATAVSFAVSAVILKADAKEESDEFAQKVKETQ AAKAASKGLTVTNGSASLSGIQQIIFACDAGMGSSAMGASILRKKVQEAGLVQTVTNRAI NNLTDEGNTLIVTQAELQERAKQKAPNATFVAVENFLNSPRYDEIVAELSGTKEKNDAQP TVSKATPASEIEGDLANVNEILLVHDDRVGSATMGMKVLEEILDKEKISMPIRKININEL TQQTQALIVTKAELTEQARKKAPKATHLSVKSMVNPKKYETVVSLLKESA >gi|307679024|gb|GL456773.1| GENE 85 91326 - 91763 623 145 aa, chain + ## HITS:1 COG:L32907 KEGG:ns NR:ns ## COG: L32907 COG4668 # Protein_GI_number: 15672005 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol/fructose-specific phosphotransferase system, IIA domain # Organism: Lactococcus lactis # 9 140 8 139 143 174 65.0 6e-44 MENLTNISIELNQQFNTKEEAIRFCGEKLVEAGCVEPAYIEAMIERDQLLSVYMGNFIAI PHGTEEAKKLVKKSGICVVQVPEGVNFGTEEDEKIATVLFGIAGVGEEHLQLVQQIALYC SDMDNVVQLADALSKEEITENLAIA >gi|307679024|gb|GL456773.1| GENE 86 91778 - 92932 1619 384 aa, chain + ## HITS:1 COG:L33416 KEGG:ns NR:ns ## COG: L33416 COG0246 # Protein_GI_number: 15672006 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol-1-phosphate/altronate dehydrogenases # Organism: Lactococcus lactis # 3 380 4 385 385 417 57.0 1e-116 MNAVHFGAGNIGRGFIGEILAKNGFHITFVDVNETIIQALKERKSYTIELADASHQQINV ENVTGLNNMTEPEKVVEAIAEADLVTTAIGPNILPRIAELIAQGIDARAEANCQKPLDII ACENMIGGSTFLAEEVAKYLKNPAYAEQWIGFPDAAVDRIVPLQKHEDPLFVQVEPFCEW VIDDTNRKAKEIQLEGVHYVADLEPYIERKLFSVNTGHATVAYTGALLGYQTIDEAMQDA LVVAQLKSVLQETGKLLVAKWNFDEQEHAAYIEKIIQRFQNKYISDAITRVARTPIRKLG AQERFIRPIRELQERNLVSPHLLAMIGIVFNYHDPEDEQSRQLQEMLDQESVDTVIAEVT GIEDPETVKNIKQNVERYARPQVA >gi|307679024|gb|GL456773.1| GENE 87 93001 - 94116 969 371 aa, chain - ## HITS:1 COG:L125707 KEGG:ns NR:ns ## COG: L125707 COG0665 # Protein_GI_number: 15673855 # Func_class: E Amino acid transport and metabolism # Function: Glycine/D-amino acid oxidases (deaminating) # Organism: Lactococcus lactis # 1 365 2 366 373 399 56.0 1e-111 MKKIAIIGGGIIGMTLANYLDPQKFDITVYDEGLGQATKASAGIISPWLSKRRNKKWYQL AREGAALFPKLVKDFQLTEDIYRQSGTVILRPAAALADLAHLAEERKQTAPEIGEITMLS AVQTAKFLPLLKETPSLFISGGGRLDGPAYLNHLQKRAETKGVTFCSQRAHFRQLNQGWE IVTNSEKKSVDFLALTPGPHLKELLATLNLSVDIRPQKGQLLVFETPFTNSQQWPVAMLD GEADLIPFNQGKILLGATHENEQAWDLEETVSAFQQLTSGTAPFLKEAEQLFKQPMHYRV GTRAYTSDFAPFFGPLPEMPHLVVASGLGSSGLTTGPFIGYQLAEYFNTGAFKGELYQKP LSQYVKNNPSL >gi|307679024|gb|GL456773.1| GENE 88 94195 - 94833 634 212 aa, chain - ## HITS:1 COG:YLR290c KEGG:ns NR:ns ## COG: YLR290c COG0702 # Protein_GI_number: 6323321 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Saccharomyces cerevisiae # 2 89 4 95 277 68 36.0 1e-11 MKVIIFGGSGFLGQQIAKILVQRQHQVISVSRHGKPATLSASWSHQVQWVCSDVTRDTNW QEQVQRADWVIDTVGILFENPRKKKTYQRLILTPVKKISSFLAQQKNPAKFLFISANTVP FPLRKYMDAKLAAEELIHQEVAEAVIFYPSLLVGQERTGTILFSKCIYFFKKIPFLKNLF IGYDPVPVAEMAQEIVHVLEGGNSIYTHRRTR >gi|307679024|gb|GL456773.1| GENE 89 95178 - 96332 1554 384 aa, chain + ## HITS:1 COG:BS_yknX KEGG:ns NR:ns ## COG: BS_yknX COG0845 # Protein_GI_number: 16078499 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Bacillus subtilis # 73 364 76 377 377 76 28.0 8e-14 MGAVAVIAVGGIVTVNALNKNAQQVAVKQAPKDDWGIDYFDVPDLQQIYINGVIQPEQME AFARDQKITKDPEIKVKNGDVVDAGTELFTYEDEAVTKEIEAQQNSLAKLETKRANIYNK WNRAIDKFNKTKEEDRTMSGDDLNEQYQTEVDAVDEEITFTNETLADLGAKQYISTKANF KGRVSIPEVKDANSPILRLTSEDLYLAGKVNEKDLTKISVGQKAKLTSVSNNVVVDGSIS YIDDNPPEGNSDAASGNPEGGTTMSSYSVKIALANLDKVKNGYHMQATIDLGDLGAIELP KKAIQKEGEQAYVLVNDFGTIIRRDVQVGQENGDKMAIESGLESADRVVISSKKPVKVGD IVESDAAIASDESATNESMTDASK >gi|307679024|gb|GL456773.1| GENE 90 96345 - 97052 261 235 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 13 232 7 217 311 105 32 2e-21 MEANNTNQPLIELRDINKFYPVGKEKLHVLKELNLTIHQGEFILIMGKSGSGKTTLMNII GFLDRLTYGSYHFSGTDVSKLSENKKSAFRNEYLGFIFQQFFLINSLNVSQNVQLPCVYE GKKSRAEKKAIAEKYLKIVGLETKAKSKVTELSGGQQQRVAIARSLVNDPLLIMADEPTG ALDSETGTEIMELLKELNEQGKTIVMVTHDEDMKKYASRVIHMKDGRFLEEEVIR >gi|307679024|gb|GL456773.1| GENE 91 97049 - 98278 276 409 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 [Flavobacteriales bacterium ALC-1] # 12 407 15 410 413 110 26 3e-23 MIANLFVSTFLSLKAHKLRVFLTMVGIIIGITSVVTISALGEGMKRQVVKASSAVNADVL KIHYTMSDGSSDNFMSYEEPDYTFSRVDLKKLQDIQGIESIYPQYGESMMGGGDNLFVPM DYFGAQANLSITSTKGQNDILYGRDFQPSDANTDAIVLNHDIFEAQIRLDDPSQLIGKAV SIGGYMYKVIGILAPKDLDSLGMNDDWATAMSSFVSRESYNKLAKTKAISGINIKVREGA DREAILGQAITILSENHPEVKGTFKENDQDQQLQQQMEEMVTGMTMFLMAITAISLLVGG IGVMNIMYVSVTERKREIGIRRAIGAKPRVILFQFLMEAAFITLIGGLIGVGCGYLLATV VGGYISITPIITPSIFAISTLVSVFTGIFFGIIPAIGASRMDPIKAIYN >gi|307679024|gb|GL456773.1| GENE 92 98412 - 98567 105 51 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307288791|ref|ZP_07568769.1| ## NR: gi|307288791|ref|ZP_07568769.1| hypothetical protein HMPREF9505_02175 [Enterococcus faecalis TX0109] hypothetical protein HMPREF9504_01173 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9505_02175 [Enterococcus faecalis TX0109] hypothetical protein HMPREF9504_01173 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9502_00725 [Enterococcus faecalis TX0031] hypothetical protein HMPREF9503_02503 [Enterococcus faecalis TX0043] hypothetical protein HMPREF9508_01378 [Enterococcus faecalis TX0312] hypothetical protein HMPREF9516_00177 [Enterococcus faecalis TX1302] adenylosuccinate synthetase [Enterococcus faecalis OG1RF] # 1 51 22 72 72 95 100.0 1e-18 MKKTVRLLLVGYVEWTVEERYQSCLGNNIVSIRQLFKKVQAPITYRNTTKI >gi|307679024|gb|GL456773.1| GENE 93 98564 - 99685 808 373 aa, chain + ## HITS:1 COG:no KEGG:Sez_1592 NR:ns ## KEGG: Sez_1592 # Name: not_defined # Def: hypothetical protein # Organism: S.equi # Pathway: not_defined # 9 371 12 371 372 102 24.0 4e-20 MKKIVAGFLSLISIGIMLFVVKDKLIEEKKQSFVVQEETDFYVLSTQAIYSFIFSENDIK KHKRSRVDLPEIVPTGFSKGRLQSHYLLFSTGDLLSSTKDEFIVSVDFFKGELLKRKTEK YLYTGTGYSSNYFYTVQAERLYSFDTEGNPVSSYMFNESTTPVTQFSGTQNKLYVVASQE DKEKQLYENMLFIFKEGENLTLTDEIFLDTSPEYVYGFTSSVIVNNQIYLPITAHRNRVS YENVPDNRIMQMGLDAKNQRFIQLTENFPNLIYKSRTSEYLIIDHEPNALGKVGLSIVNL ATEESYFLNINGQLKTEELEESMIYSVNTTKDNQLLVLAGQTLLRYDLVTGNLLSETKVL EKEEQGIYIWVNH >gi|307679024|gb|GL456773.1| GENE 94 99728 - 100432 720 234 aa, chain - ## HITS:1 COG:no KEGG:EF0419 NR:ns ## KEGG: EF0419 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 234 1 234 234 427 98.0 1e-118 MIIFLLILCVLGFAYTNVFGRKVWHKCCMVIFGLGFLASLSLIVLNDKDHFGMTEVTQDK TFELKSSSSSKDGPNMLLYQPLGDGSEKVYLYNTPDKKKLQKTGTENVTNTVQKDAQKST LVQKTTKWSYQESWAKTLFGLADNDNQFAKQENTFNIASDWLVLSADQAKKLGEYMEQHA ADIKKEGTETVGKKMMAAMMANPSMSQEEQAKLTEQYTKEFQQELIQKILSDMK >gi|307679024|gb|GL456773.1| GENE 95 100432 - 101907 1828 491 aa, chain - ## HITS:1 COG:lin2733 KEGG:ns NR:ns ## COG: lin2733 COG0477 # Protein_GI_number: 16801794 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 4 484 7 487 493 518 61.0 1e-146 MTSQQPVDIHGKPYNRSLLVGVLLIGTFCTILNQTLLTTALPTLMKEFDISASSVQWLTT GFLLVNGIMIPISAWLINKFSSKKLYITAMSTFLIGTIICFVAQDFGMLLTGRLVQAAGV GVSMPLLQTIMLSIFPPEKRGAAMGTTGIVIGLAPALGPTLSGWIIDSYTWRDLFGMVIP IVVLVLILASFLMKNVIQLSNPSIDVLSVILSTLGFGSLLYGFSSVGDKGWGSPQVYGFL IVGAIVLCLFTYRQLHLEQPFLELRVFKSKVFTVAAILSGVTNMAMIGAEMVLPLYIQNI RGESAFHSGLMLLPGALVMGLMMPVTGRIFDKIGARRLAITGMFILTAATLPFAFLTKAT PIIYIIVLYAIRMFGISMVMMPVTTSGMNALPMNLLSHGTAVNNTFRQVASSIGTAVLIS VLTNVTKDGLPASDLLKTAPLTYRDQATNATLNGYHAAFFVATIFGVLGLAITFFLNKKE AMPVKEVGAMK >gi|307679024|gb|GL456773.1| GENE 96 102050 - 102517 575 155 aa, chain + ## HITS:1 COG:no KEGG:EF0421 NR:ns ## KEGG: EF0421 # Name: not_defined # Def: MerR family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 5 155 1 151 151 288 100.0 4e-77 MWSKMIQRLLNEENLLIGISELSEIAEVSPRQLRYWEEKGYISSIAKDANGPRKYRLHTV VKVHWIKRFLDEGYTLQSAVEKAEEQHRNVGMTKKIFSQMFHGISEVCPNYVAIDLGDFD EEQKLYVVFNETTEVSEYLLIPKDADVSDELKKRK >gi|307679024|gb|GL456773.1| GENE 97 102648 - 103400 927 250 aa, chain + ## HITS:1 COG:TM0065 KEGG:ns NR:ns ## COG: TM0065 COG1414 # Protein_GI_number: 15642840 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Thermotoga maritima # 11 250 4 244 246 123 34.0 3e-28 MKETKPYGTVLLKAAKIMDCLSLQPDQTLQEIAKNTEMTASTAIKILETLTLIGYVQKDT NKTYRLGTKLIRYANQSVEQIDLAEIAVPYLENLQNTVDETIHLGILNNNEILYINKLEP KNQTIRMSSKVGITRPLYNSAMGKAVLAEFSEEQVQQYLDTQTLIPYTENTITNPLRLKK ELKQVQQTGVAYDDEEIEQDIFCSGVSLMKDGEIAGAFSVSMPKYRLTEENKTTINQALL ATKAAIEAKL >gi|307679024|gb|GL456773.1| GENE 98 103561 - 104208 980 215 aa, chain + ## HITS:1 COG:SP0317 KEGG:ns NR:ns ## COG: SP0317 COG0800 # Protein_GI_number: 15900249 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-6-phosphogluconate aldolase # Organism: Streptococcus pneumoniae TIGR4 # 1 206 1 206 209 222 53.0 3e-58 MKRVSILQKLENAGVIAVVRGKTKEEALKASQAIVAGGMRGIELTFTVPQATEVIQELVA LYQENPDVVIGAGTVLDATTARLAIVAGAEYIVSPSFDEETAKICNLYQVPYLPGCMTIT EMKEALKSGADIIKLFPGSVYGPSVISAFKAPLPQLNIMPTGGVSLENMAEWFDAGVTAV GVGGNLLAPAATGDFEKVREVAQAYMEKFQAIKGV >gi|307679024|gb|GL456773.1| GENE 99 104213 - 105220 989 335 aa, chain + ## HITS:1 COG:TM0067 KEGG:ns NR:ns ## COG: TM0067 COG0524 # Protein_GI_number: 15642842 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Thermotoga maritima # 3 335 2 339 339 225 40.0 1e-58 MGKVVTLGEIMLRLSTPVGIRVAQTENFAVHYGGGEANVAISLANYGHQVTFASKVPDNS LGEAAKKHLSRYGVSTEFVRTGGTRLGTYYLETGTGERAASVVYDRAYSSFAQIEEMEWD LHELFSGVEIFHISGITAALSKKWQSMTVALVKAAKQAGCQVSFDINYRGKLWSQKEASV ALKSILPFVDICSAGVLDARYLLEIPEPEEELEDALTWYYRKMQERYPNIQVFYSTKRQV HSATDNELIGTLWYKGAYYTSKCHRLQPIVDRVGAGDAFAGGVLHGILAAYDPQTCIDFA TAASALKHTVHGDCNQFSQKEVLAFLATGSGKINR >gi|307679024|gb|GL456773.1| GENE 100 105233 - 106072 1150 279 aa, chain + ## HITS:1 COG:BH2166 KEGG:ns NR:ns ## COG: BH2166 COG3717 # Protein_GI_number: 15614729 # Func_class: G Carbohydrate transport and metabolism # Function: 5-keto 4-deoxyuronate isomerase # Organism: Bacillus halodurans # 4 279 1 276 276 320 53.0 2e-87 MQNMETRYTHSPADIRHYSTEQLRDEFLVEKVFIPGAISLTYTHNDRMIFGGVTPTTEEL EIILDKELGVDYFLERRELGVINIGGPGFIEIDGAKETMKKQDGYYIGKETKHVRFSSEN PDNPAKFYISCVPAHHKYPNVKISIDEITPMETGDPLTLNQRKIYQYIHPNVCESCQLQM GYTILEPGSAWNTMPCHTHERRMEAYVYFDMEEDTRIFHMMGKPDETKHLVMSNEQAAIS PSWSIHSGVGTSNYSFIWAMCGENITYTDMDMVAMDQLK >gi|307679024|gb|GL456773.1| GENE 101 106094 - 106882 200 262 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 13 252 4 238 242 81 26 2e-14 MEFKMNDFQLDGKVALITGAVYGIGFEIAKSLAEAGATIVFNNLSPESVEQGLENYRAAG IEARGYVCDVTDEEQVQAMVAQIKEEVGSIDILVNNAGIIKRIPMVEMSAEEFRQVIDVD LNAPFIMAKAVIPDMIEKGHGKIINICSMMSELGRETVSAYAAAKGGLKMLTKNIASEYG QYNIQCNGIGPGYIETPQTAPLREPGHPFNEFILGRTPANRWGTPADLAGPAVFLASNAS DFVNGHILYVDGGILAYIGKQP >gi|307679024|gb|GL456773.1| GENE 102 107112 - 108218 1155 368 aa, chain + ## HITS:1 COG:STM1911 KEGG:ns NR:ns ## COG: STM1911 COG4225 # Protein_GI_number: 16765253 # Func_class: R General function prediction only # Function: Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins # Organism: Salmonella typhimurium LT2 # 1 367 11 378 379 454 56.0 1e-127 MIIKQEQFIPKDTVETTIDLLIRNLTTIKDNTGEFLLDFDGLKVDDKSWTIWNWPQGVGL YGIYKNYRNTKSEKALQVVNDWFEGRMQEGAPPKNVNTMAPLLTMAYLYEDTKDSKYIPY LEQWAEWVMEEMPRTNEGGLQHATYGPENKNQLWDDTLMMTVLPLAKIGKLLNRLDYLEE AKHQFLIHIKYLQDKKSGLWYHGWTFEGNHNYAEALWARGNCWITIAIPEIIEILELPKG DSLREFLLSTLNAQVAALAKYQDESGLWHTLINDSNSYLESSATAGFAYGILKAVHKKYI SSEYEEVANKAIAGLLNEIDETGEVQHVSVGTGMGDNLDFYRTIGMTAMPYGQSLTILCL TELLVSYC >gi|307679024|gb|GL456773.1| GENE 103 108236 - 109246 589 336 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90020579|ref|YP_526406.1| ribosomal protein L22 [Saccharophagus degradans 2-40] # 1 334 4 331 331 231 37 2e-59 FMKKRKVLFTAVMVLAGLQLLSGCGKTEASASDTVVLRYAYASNSQPVIDSMKKFGELVE EKTDGKVQIEYFPDGQLGGETELIELTQTGAIDFAKVSGSALESFSKDYSVFAIPYIFDN EKHFFKVMDNQALMQPVYDSTKKLGFVGLTYYDSGQRSFYMSKGPVTSPDDLKGKKIRVM QSETAIKMVELLGGSPVPMGSSEVYTSLQSNLINGAENNEFVLYTAGHGGVAKYYSYDEH TRVPDIVIMNEGTKERLTAKQEQAIEEAAKESTAFEKTVFKEAVEEEKKKAQAEYGVVFN QVDSEPFQKLVQPLHESFKNSSEHGELYQAIRQLAD >gi|307679024|gb|GL456773.1| GENE 104 109261 - 109737 256 158 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90020580|ref|YP_526407.1| ribosomal protein S3 [Saccharophagus degradans 2-40] # 1 148 1 150 164 103 35 7e-21 MKGFRKFLNRLLEILGSIILAAMVLVVLYQVFARTVLKNPSTLTEEFVRFALVWLAMLAS AYVVGKKGHLAVTLLSEKLQGKQKRFLEFIVQLLFLLFAGVIMIFGGWNGVVITLGQISP SLAIPMGYVYLAVPVAGVLMFIYSLMNLLELFTQSKDS >gi|307679024|gb|GL456773.1| GENE 105 109773 - 111068 1089 431 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90020581|ref|YP_526408.1| ribosomal protein L16 [Saccharophagus degradans 2-40] # 7 427 6 426 435 424 48 1e-117 MALEAGIILFVVFAVLLVVGMPIGMSIAASSIATLLLVIPFEAAAFTSAQKMVSSLNSFS LVAIPFFIFSGVIMNNGGIAQKLVNFSMLFVGRVPGALAHTNVLGNALFGSISSSAIAAS TAIGGVLIPQQVNEGYDRKFATAVNIASAPTGMVIPPSTAFIMYSLVAGGASISSLFLGG YLVGSLWALGIMVVAYVIAKRHNYPTVAKAKKGEVSKVLREAVPSVLLIVIIIGGILTGL FTAIEASAIAVAYSLLISMFYYKTVKINDLPKMLKEAVLMSGTIMFLLATSSMMSFAMAF TGIPEAISTAILGITDNKYLILLLVNVVLLFVGMFMDVGPAILIFTPIFLPIVMNVGVDP VHFGLFAIMNLCVGSITPPVGTGLYVGASVGGVKAEQMLKPLVPFYLVILAILLLITYVP ELVMWLPNLIS >gi|307679024|gb|GL456773.1| GENE 106 111216 - 112088 725 290 aa, chain - ## HITS:1 COG:PA3571 KEGG:ns NR:ns ## COG: PA3571 COG2207 # Protein_GI_number: 15598767 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Pseudomonas aeruginosa # 32 287 46 298 307 93 28.0 4e-19 MDYWEKADYSWSDDSKRHILTPSSKSRTLFYYIQEIGQFKASRPYYTERAHLPSYLIKFT LNGTGELRYRYHTYSLQRGDLFFIDCRDYQYYQATSEDPWEMDWIHFEGGNSGAFFQEFM KNGSPVFSTNQLPEDNPIHLIIQQLLQLQDLQHAQTDYQSSVLIHQLLNELLLQKYRQDF TYETIPSLVLEMKAYIDQHFKETISLEDLAQLFHLNKYQLNKEFSKYIGLPPIKYQISKK ISYSKDLLRYSNQTVKEIAVDVGLENYAYFSRLFKKRTGLTPSQYRKSGF >gi|307679024|gb|GL456773.1| GENE 107 112217 - 113719 1523 500 aa, chain + ## HITS:1 COG:BS_yulC KEGG:ns NR:ns ## COG: BS_yulC COG1070 # Protein_GI_number: 16080172 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Bacillus subtilis # 17 492 3 476 485 520 53.0 1e-147 MTTINKVKKEQVEKRTYLAVDIGASSGRIMKSQRLANGQITIEEIHRFKNGFHQKDGYQR WDMASLVHELLLGLQKVKQLGIKECFIGIDTWGVDYCLLDQSGQLLDEPIAYRDGRTEAA VTNFSKGYSLEKLYQQTGIQVQPFNTIFQLFVEEKERLAAASQLLLIPDYLGYVFTGKAV IEATNASTTQLLNAGTKQWESELLDFLGIDETLFPTLVEPGTILGDLQTAAFPDYDLPNA TLITIASHDTASAILGTPGIGDDWAYISSGTWSLLGIETTVTTISAEAFQENYTNEWGAQ NTIRFLKNIMGMWLIQEVARYQNYQYSYAELAALAEKEPAFQQFIDVNDPRFLNPGNMIT ELQAYCRETQQTVPESPGELARCIYDNLALCYSVELEKLAQLTGIERKITTLHVVGGGSN NRLLNQLTADVANVTVKAGPGEATALGNLLMQMIATGELKDIPAARTCIQTSFPTEIYQA NPIDSTIKNRYQAFMKRSSL >gi|307679024|gb|GL456773.1| GENE 108 113716 - 115002 1395 428 aa, chain + ## HITS:1 COG:lin2980 KEGG:ns NR:ns ## COG: lin2980 COG4806 # Protein_GI_number: 16802038 # Func_class: G Carbohydrate transport and metabolism # Function: L-rhamnose isomerase # Organism: Listeria innocua # 2 416 5 420 420 678 73.0 0 MTTITQKYEEAKEKYASIDVDTEAVLEKMADVKISMHVWQGDDVRGFLSEDELSGGISVT GNYPGVARSPQQLRQDLEKAFSLIPGKHKLNLHAIYLDTEERVDLNELEPKHFEPWVTWA KENGLGLDFNPTFFSHPMYRDGFTLAHPNPQVRDFWIEHGKRSRRIAEYFGRELGQVAVN NFWVPDGFKDNPVDRLTPRKRLMASLDEIFSEEIDPAYTVDAVESKLFGIGSEAYTVGSH EFYMGYGLTRNKLICLDAGHFHPTEVISNKLSSLSLFGEGMLLHVSRPVRWDSDHVVIMD DELQEIAKELVRNDLLGKTHVGLDFFDATINRVAAWVIGTRNTQKALMKAMLEPTNVLKE AELIGDFTTRLALTEELKDFPFADIWNYYCQENHVPIGLDWLTDVQEYEKVILPTRQLPT GKDSCRFS >gi|307679024|gb|GL456773.1| GENE 109 115030 - 115878 1171 282 aa, chain + ## HITS:1 COG:lin2979 KEGG:ns NR:ns ## COG: lin2979 COG0235 # Protein_GI_number: 16802037 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Listeria innocua # 5 272 4 271 273 419 70.0 1e-117 MKKMNVLQAPFVEEMVKTTKNLYRLGWDERNGGNISYLLKEEEILPFLNPTQVLRKIPMK FDATKLAGKYFIVTGSGKYFKNVCDAPSENLGILRVSENGQELELLWGLEDEAVPTSELP SHFMSHIARLAVDPENRIVMHNHASHLLAMSFTHELDEKVFTRTLWQMCTECLVVFPDGV GIIPWLVPGTNEIGVATAEKMKESRLVLWPQHGIYGTGRDMDEVFGLIETAEKAAEVYTY VCAQGGVRQTISDADLWRLAEAFGVTPKVGYLEEKVSKRRKL >gi|307679024|gb|GL456773.1| GENE 110 115896 - 116186 282 96 aa, chain + ## HITS:1 COG:yiiL KEGG:ns NR:ns ## COG: yiiL COG3254 # Protein_GI_number: 16131741 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 96 8 103 104 105 52.0 2e-23 MQVYPDQHAEYQRRHEKLWPEMRQMLKEHGVIKYQIFLNTETSTLFGYLEIEDEARWEQI ALTPINQKWWNYMEDIMETNPDCSPVTAELKKVFEL >gi|307679024|gb|GL456773.1| GENE 111 116396 - 117316 974 306 aa, chain + ## HITS:1 COG:CAC2818 KEGG:ns NR:ns ## COG: CAC2818 COG2207 # Protein_GI_number: 15896073 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Clostridium acetobutylicum # 16 281 8 275 279 151 29.0 2e-36 MKSVKEIRKSQVNSMISDQYEIFHVKDMVSPEKTIYHYHDFYEVHCTLKGVATFFLDGHQ FDVEAGTVLLIHYHDLHRIIKQSTDNFERMYIFLTPDFLQQRSSKRTNLSACFQHFGQRR SKVIKVDVAKLANYLTPLDHSPLPEEYGADVRYEQQLLDFLIYLNQLVLKEENESQPKQM IENERIEAMITYISQNLDQPLTLEQMEKNFFVTKYYVTREFKKHTGFTFHQFVLKKKLLY AKQLLKEYRSASDVYLKCGFKSYPHFLKSFKKEFNMTPKEFLVKHKNNQIIHFDHYEESI KKVRLE >gi|307679024|gb|GL456773.1| GENE 112 117318 - 118154 668 278 aa, chain + ## HITS:1 COG:mll1734 KEGG:ns NR:ns ## COG: mll1734 COG1082 # Protein_GI_number: 13471685 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate isomerases/epimerases # Organism: Mesorhizobium loti # 19 219 17 218 304 90 28.0 3e-18 MLTLAVRAHDVGTKISPVELAKKIAETNITSIQFALGISYPEYASAAVLSPGLGSQLKNI FEDEKITISVLSCYINLIHPDLEEREKRLHQFETYIRYASMFGAKIVATETGSIYETIYY TEDNYTEEAYEEVLFSVRRLCREAEKYGIIVGIEPGINHPIHTIEKMQRLIDEVASTNLG IILDPTNLIRVDIDKTYLEIVEEAFECFGEKIVAFHLKDFIIRNQQIFPVAIGEGQVPLK ETIQFLNKHKPGLFTIFEETPFEKIASAYQKVSQYHSI >gi|307679024|gb|GL456773.1| GENE 113 118237 - 118437 367 66 aa, chain - ## HITS:1 COG:no KEGG:EF0439 NR:ns ## KEGG: EF0439 # Name: not_defined # Def: immunity protein PlnM, putative # Organism: E.faecalis # Pathway: not_defined # 1 66 1 66 66 90 100.0 1e-17 MRYLIGGIFLLISIWQFIVTGRTFSYLKKEGGKRTSPFILLGLWSSLVFAIISFAVAIAS FFYVSF >gi|307679024|gb|GL456773.1| GENE 114 118544 - 120025 1796 493 aa, chain - ## HITS:1 COG:L104437 KEGG:ns NR:ns ## COG: L104437 COG3104 # Protein_GI_number: 15672684 # Func_class: E Amino acid transport and metabolism # Function: Dipeptide/tripeptide permease # Organism: Lactococcus lactis # 5 493 2 497 497 511 55.0 1e-144 MSDKEQLEKLDKSFLGQPKGLATLFFTEMWERFSYYGMRAILMYYIYDTVANGGLGLPKA TALAIMSIYGSMVFMSSIIGGWVSDRVLGSRKTVFIGGLLIIAGHIVLATPFGVPALFVS IMLIVFGTGMLKPNVSGMVGHLYSKTDLRRDAGFSIFYMGINIGALIAPLVVGTLGQEYN YHLGFSVAAVGMFFGLLQYYFQGRKSLAGIGQAPTNPMSKEEQKKFAKAFMLAIVVALLI FGGAYVTGHLTIDFFINTISVLGILLPVYYFSKMLTSKDVTAEEKPKVLAYLPLFLAAIV FWSLEEQGSSILALFANERTQTSLFGFPIAASWFQSLNPVFVVILTPIFVTLWTKLGKRQ PSTVVKFSLGLVFAGLSFVLLMLPGLLYGTEGRVSPLWLFFSFFIMIVGEMCLSPVGLSI TTKLAPKAFEAQTVAIWLLADAASQAINAQIARFYTPGTESAYFGIVGLVAVVAGILLFI VKKPIQNLMGDVR >gi|307679024|gb|GL456773.1| GENE 115 120843 - 121442 859 199 aa, chain + ## HITS:1 COG:no KEGG:EF0443 NR:ns ## KEGG: EF0443 # Name: not_defined # Def: LysM domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 199 1 199 199 312 100.0 5e-84 MKSIKTILLGTTLAAGLGLFLGTDANAESLYTVKAGDTLSTISHQFAGDNSLIQKIASDN KLPNLDLIFEGEQLVIRSEKEVANTPAPAVEVAPVQQVVEQPVAQPVQQEVQQPVAQEVA QPAAPAASSDAKEWIAQRESSGSYDATNGQYIGRYQLSASYLNGDYSPANQERVADQYVA GRYGSWDAAKSFWLANGWY >gi|307679024|gb|GL456773.1| GENE 116 121512 - 121802 56 96 aa, chain - ## HITS:1 COG:lin2484 KEGG:ns NR:ns ## COG: lin2484 COG2050 # Protein_GI_number: 16801546 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein, possibly involved in aromatic compounds catabolism # Organism: Listeria innocua # 4 96 31 123 123 75 36.0 3e-14 MHKQPYGLVHGGLNGVLIETACSLGANENVPENTFAVGIDLQVNHLRSVHDGSLTVIATP DHSGKTLQVWEAKIYNADHQLTSVGRCTLTNRQKKQ >gi|307679024|gb|GL456773.1| GENE 117 122057 - 122872 1067 271 aa, chain + ## HITS:1 COG:lin1781 KEGG:ns NR:ns ## COG: lin1781 COG0447 # Protein_GI_number: 16800849 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroxynaphthoic acid synthase # Organism: Listeria innocua # 3 271 4 272 272 461 81.0 1e-130 MRNWTTIKEYDEILFEQAGKVAKITINRPHVHNAFTPKTVMEMIDAFNISRDKEDVGVII LTGAGDQAFCSGGDQKVRGNGGYVGEDNIPRLNVLDLQRLIRVIPKPVIAMVKGWSIGGG NVLQLVCDLTIAAENAKFGQTGPNVGSFDGGYGSGYLARVIGHKKAKEVWFMCKQYSAQE ALDMGWINTVVPLDQVEDVTMGWAEEMLTKSPIALRMIKASLNADTDGLAGVQQLAGDAT LLYYTMAEAQEGRDAFKEKRTPDFDQFPKFP >gi|307679024|gb|GL456773.1| GENE 118 122877 - 124334 1232 485 aa, chain + ## HITS:1 COG:lin1780 KEGG:ns NR:ns ## COG: lin1780 COG0318 # Protein_GI_number: 16800848 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Listeria innocua # 3 474 6 463 469 378 42.0 1e-104 MTWLNKQVQKRPDHPAFYFQDESWTFLEVQQEVSHWVATYQQVLAPEEKRVALFSKNSKE LYFSILALWELGKELLFLNTHLTLAELTFQLKDAQVKTIIGAPETQALLEEISFVDVQPM VKKQHSLSHQEFQQPSDLESVASIMYTSGTTGQPKGVLQRFKNHLASARGTQENMGITAE DCWLCAVPLFHISGLSIVVRQLVLGCSIRLYDKFDEQQVTQDLQEGRGTVISVVATMLQQ LLSVYPEAGYRASFKGMLLGGGPIAPDKLAQCEEKGIPVIQSYGMTETCSQVVALKFEDA ALKIGSAGQPLKDMQIKIVDELGQEQPEKQVGEILLKGPNVVSGYLNQRQPEKWTADDWF KTGDMGYLDAQGYLYLVSRLSELIISGGENIYPTEVEQVLQAITGIKAAAVVGEPDAQWG AVPVAYVISDQELTLAQIQDQCSRKLAKYKRPKRIYFCHSFPQTASGKIAKHRFMTEERE AFLIR >gi|307679024|gb|GL456773.1| GENE 119 124331 - 125698 1490 455 aa, chain + ## HITS:1 COG:lin1784 KEGG:ns NR:ns ## COG: lin1784 COG1169 # Protein_GI_number: 16800852 # Func_class: H Coenzyme transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Isochorismate synthase # Organism: Listeria innocua # 2 453 4 459 462 310 37.0 3e-84 MKLPDELRQAYQKNARQFSWVFPLETEQTALAIFAAGEKAYQGERFFWQTPKKDFALVGF GYETILKGAETETHQLNNFLKKESATRFQNMSISGTGALLFGGLPFDTEQTPTEAWGELG EGWFYLPSILFTFSGSRIYGTLNFSGSSEQEVEERWSTLVAQFDRLLATCEELPAVAETK IDKEEVAVTEWLQAVNETVAVLREDGPLKKVVLARQLAVSSPEKIRSNQVLVNLMAQQQN TYLFALEAKDTSFIGATPERLLLGTKETFATACIAGTIKTGQTPEETKALGAQLLQDRKN TGEHQIVVERLAKELAKMTTSENSIQAPIILENRDVQHLYVPISGQRKPGISFLESVMQL HPTPALGGEPKELAVEWIRQYEPGSRGLYGAPIGWISGNDDSGEFAVALRSGVFAGQQGV LYAGCGIVADSQAELEREETKIKFQPMLRGIGGQV >gi|307679024|gb|GL456773.1| GENE 120 125698 - 127431 1709 577 aa, chain + ## HITS:1 COG:lin1783 KEGG:ns NR:ns ## COG: lin1783 COG1165 # Protein_GI_number: 16800851 # Func_class: H Coenzyme transport and metabolism # Function: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase # Organism: Listeria innocua # 2 565 3 573 580 508 45.0 1e-143 MNHQETMTDYLTAFIEGLKNSGVEQAVISPGSRSTPLALLLHRETAIQTFVDVDERSAAF FALGLSKASQKPVVLLCTSGTAAANYYPAICEANISHVPLVVLTTDRPHELRQVGAPQAM DQLQMYQNHVKLFVEMALPEATEEMLNYAYWQGAKGAAFAQQTPAAPVHLNFPLREPLLP DLERKTKSSQQTALFAGQSILSTEQVQQLADQWYQKNGVLVVGGSHTEEEAALFIQLAEA LQWPLLADPLANIVTHGQNSEVVIAHSDLFLNVATLPQEPEVVVRFGSLPISKNIMLWLK RLATTETTFYFVDENGQWQEQLKKSQTVIQAKETTFVEQLLTVVKSTEATWLAQWLLLEK TVSEVLLETLNATELNETTASLAVHQTMKENGQLFVSNSMAIRYLDRFMDSRPYRMFGNR GINGIDGIVSTALGMSAVAPTQQNVLLIGDLALYHDMNGLFLAKRYQLPLTIVLLNNNGG GIFSFLSQRTLREDDFEPLFGTPLDLDFSLVAELYGASYQEVKTIAELKQILQTAAEEPQ FQVIEVKGNRQENVHLYESILAEIGRRVERQGISWNG >gi|307679024|gb|GL456773.1| GENE 121 127419 - 128243 855 274 aa, chain + ## HITS:1 COG:BS_ytxM KEGG:ns NR:ns ## COG: BS_ytxM COG0596 # Protein_GI_number: 16080133 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Bacillus subtilis # 25 270 27 271 274 192 40.0 6e-49 MERLIRGMQYHYQWLTPFDAKRTTVVCLHGFTGTLATFAAVFPSQTPYNVLGIDLPGHGA TASLVAPERYTMKQVCHDLAELTESLNLPCFCLLGYSMGARTALGFALHYPQKVQHLLLE SGSPGLATVAERQTRICQDHRLAERLLEEPLVDFIDFWQELPLFQTQKALSVAQQMAIRQ ERLSQSAFGLASSLWYMGTGAQESYWERLAELQPIPTDLLVGGEDQKFIGIAKKMQARQP LLRLTIFPEAGHCIHLEQPTIFYEKVTALLEGAV >gi|307679024|gb|GL456773.1| GENE 122 128244 - 129347 1088 367 aa, chain + ## HITS:1 COG:lin2664 KEGG:ns NR:ns ## COG: lin2664 COG4948 # Protein_GI_number: 16801725 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Listeria innocua # 1 362 1 362 374 372 50.0 1e-103 MNIQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGNQGFGELVAFEQPDYVQET LVTERFIIQQHLIPLLLTEALEQPQEVSTIFEEVKGHWMGKAALETAIWDLYAKRQQKSL TEFFGPTRRKIPVGISLGIQEDLPQLLKQVQLAVEKGYQRVKLKIRPGYDVEAVALIRQH FPNLPLMVDANSAYTLADLPQLQRLDHYQLAMIEQPFAADDFLDHAQLQRELKTRICLDE NIRSLKDCQVALALGSCRSINLKIPRVGGIHEALKIATFCQENNLLVWLGGMFESGVGRA LNLQFASQPTFSFPGDISATERYFYEDIITEPFILEQGTMTVPQGLGIGVTLSQTNLLKY SQYQKIM >gi|307679024|gb|GL456773.1| GENE 123 129404 - 130102 753 232 aa, chain - ## HITS:1 COG:yieK KEGG:ns NR:ns ## COG: yieK COG0363 # Protein_GI_number: 16131586 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Escherichia coli K12 # 24 225 1 209 213 214 50.0 1e-55 MKILIKQDFDTMSEWAKMLLLSTMSQDKRVNLSITAGKTPALVYQKLASIVKNSSDFDNV HYYNFDEIPVPHQKEGITLTDLRTLYLTPAEISEQNIHPLTVENFQQQEQRIADAGGLDL MLIGLGADGHFCGNMPTTTHFKNETYQVTVTGSEPWFVPEMMQPGMTFVTMGPASIMKVK HLVLIVNGEQKAQMVKQVLQGPVTETYPASILQLHPNLTVLLDEAAASQLEK >gi|307679024|gb|GL456773.1| GENE 124 130354 - 131880 1572 508 aa, chain - ## HITS:1 COG:lin0373 KEGG:ns NR:ns ## COG: lin0373 COG0365 # Protein_GI_number: 16799450 # Func_class: I Lipid transport and metabolism # Function: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases # Organism: Listeria innocua # 7 507 6 508 508 644 59.0 0 MTHLLDYQPLNLYTNYQEAAEKTPTVPIIFDESLPAFPALGLETTYGESHQEILKRAYQL ATLGVKKGDKIIIYKSPKFDTYLLAVAASYLAAVPVMVSYHLPFETIEVFVDRLEDPYIL FDDVTAEKVQAVRNSSANKKLSVASLLEADATEVPQDELTKDEIAYMTHTSGTTGIPKLI CHSNHSMGWRTKWQKTIFTKIAEKKLVGFHISPVHSRFNIGVSSLMAMGFPMMPLANASS EKVAEMFSTYQPIAVETHPNNFVQWVRLAKEKPEAFASVHYYHSTFDAINNATMVAFLKA SAANEPIFLQVYGQSECGPMILRAHTLESLKDSDARDMGVGLEDLTQARITDEKGQVLPA MTDGHIQFLSKGRALTYYKEDARFAENVYGEWWDSGDYGMLDERGHLFLKDRQVDLIENI DSNLAIEDHLLDALDFLEEVIIVRGKENEPQPILAVVPGEEMDWDAWWTQVADLPHLNEP IIMAFDEIPHTATMKVQRLQLEKWLKEQ >gi|307679024|gb|GL456773.1| GENE 125 132101 - 132502 551 133 aa, chain + ## HITS:1 COG:lin2302 KEGG:ns NR:ns ## COG: lin2302 COG1764 # Protein_GI_number: 16801366 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Listeria innocua # 1 132 1 137 138 152 59.0 1e-37 MKKIYETTIINTGGRAGEVHSPDKSFSYAVASPGVKKENTTNPEQLFAAAYSACFNGALE LVMDQEKVEGKSTVTARVSLFQGEDGFSVGAELEVHIDGVDQAKAEELVKKAHEICPYSK ATRNNIDVKLTVI >gi|307679024|gb|GL456773.1| GENE 126 132580 - 133359 694 259 aa, chain - ## HITS:1 COG:lin0630 KEGG:ns NR:ns ## COG: lin0630 COG0730 # Protein_GI_number: 16799705 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Listeria innocua # 4 252 3 243 246 67 26.0 2e-11 MRVLLIYFITIFLSNTVGALSGMGGGVIIKPVLDFLGFHSLNSIAFYSSVAVFVMSISST YKQYQNGVQIEWKKAASISFGSLVGGMLGDLLLNQAIALAPNEEKVQLIQYIIMLLTLVL VLLYNQFSNWHLHLNGLSIFLIVGLGLGILSTFLGIGGGPINVACLILFFGMDIKSATVY SIITIFFSQLAKLGNIGLTTGFAVFDLTMLLAIIPAALFGGYVGGLFSKKLSQQRVAQIY SLVVFLVILLNMYNLWTVI >gi|307679024|gb|GL456773.1| GENE 127 133521 - 134324 1054 267 aa, chain + ## HITS:1 COG:lin0022 KEGG:ns NR:ns ## COG: lin0022 COG3715 # Protein_GI_number: 16799101 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Listeria innocua # 1 267 1 267 267 216 47.0 3e-56 MTVSIGIILILCLYTVVGVLDQISIQIGPYTPLFAATFTGLVLGDVQTGLMIGATLQLMT LGVATYGGATVPDFLSGAIMGTAYAIISGKGAEYGIGVAVPIGLLLTQLDILGRMANTFF QHKADRYAEEGNYKGVERCNVLGIFPWTISRVIPVFIGLAFGEQVVNAINNWIPIWVMNG LKAAGAILPAMGIAILMRYLPIKTYWPYFIIGFVLLAYGAQFFSVLGVALVGLALAAIYV MNHNKGGAATTSGTVIYEDDEEVEIDD >gi|307679024|gb|GL456773.1| GENE 128 134317 - 135135 1080 272 aa, chain + ## HITS:1 COG:lin0023 KEGG:ns NR:ns ## COG: lin0023 COG3716 # Protein_GI_number: 16799102 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Listeria innocua # 5 262 16 272 275 207 45.0 2e-53 MTNKLTKKDINKVYVRNLFGYQWGWNYEKMQGLGYAWVMMPALKRLYSEDPVAMKKALKT HLGFMNTTPAMSHLIVGADMALEEEVGIEDETAITGLKTGLMGPFAGVGDTIFIAIYRAI VFSIAAYMAQGGQVVGLLIPLIAGAVVLWVRYKFTWIGYHQGKKIATEFADKMKLFTQGA AILGLTVVGGLIPSVITYKLDLTYKMGDVTLSVQEMLDKILPALIPLGIVLLSYWLLGKK KMNSTRLIFVLILIGMVLGNLQPMLAWVGGLF >gi|307679024|gb|GL456773.1| GENE 129 135166 - 135642 730 158 aa, chain + ## HITS:1 COG:lin0021 KEGG:ns NR:ns ## COG: lin0021 COG3444 # Protein_GI_number: 16799100 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Listeria innocua # 3 148 6 151 162 142 54.0 3e-34 MTIVHARVDERLIHGQVATVWTNTVGAQRIMVVNDAAVKDQLQIGALKMAKPAGVKLSIL SKRKAIEKILAGNYDEEKVFLITKDIADMAALIDGGVPLQSFNVGNISQKEGSRAIKKSV ALTDEDIQTVRRLTDNGVTITAQMIPSEPNEAILTFIK >gi|307679024|gb|GL456773.1| GENE 130 135659 - 136510 551 283 aa, chain + ## HITS:1 COG:L147291 KEGG:ns NR:ns ## COG: L147291 COG1737 # Protein_GI_number: 15673115 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 1 283 1 283 283 122 28.0 5e-28 MEPIRSIRQKYKDFSKVNKRIADYILKDPTCLLSLTANEIASNSETSPASVTRFSKQLGF DSWEELKLSIAAVQAASNGKKDIDPIVAADDSVDTICMKVESLLNATIEDLFYTVDKQAL ERAIAHVKKAEKIHLVGIGASSLTTYNLYHKFNRAGRQAIFNYDSHMMLEFLNYATAQDI LITVSYSGLTKEALIACEIAKNRGATVIFITSNDGENVRSLSDEVLLVPNNEHLIRVGAI SSIASSMAIGDVLYLGSIQDDLDTEIERNMIETSQLVSRLKEK >gi|307679024|gb|GL456773.1| GENE 131 136525 - 137415 1098 296 aa, chain + ## HITS:1 COG:YPO2925 KEGG:ns NR:ns ## COG: YPO2925 COG2103 # Protein_GI_number: 16123112 # Func_class: R General function prediction only # Function: Predicted sugar phosphate isomerase # Organism: Yersinia pestis # 1 295 1 295 295 281 50.0 1e-75 MNLEGLTTEARNEATKKIDQVSTLEMVTLINQEDQKVAQAIEKVLPQIAAAIDAAAERFK KGGRLIYCGAGTSGRLGALDAIELTPTYSVSPERAFGILAGGEKAMYQAIEGAEDSKELA IEDLTQHQLTARDVVIAIAASGRTPYAVSAIEYGKKVGALTISVTCNNQSPMNQLAEIGI APIVGPEVITGSTRMKAGSAQKMVLNMFSTGIMVKVGNIYQNLMVNVQPTNEKLIQRATN IIKEAAEIEESQAKEYLEAAQLEVAPAIVMAKAHVDFQKAKQLLAEHDGRISEVLA >gi|307679024|gb|GL456773.1| GENE 132 137428 - 138417 1010 329 aa, chain + ## HITS:1 COG:lin2030 KEGG:ns NR:ns ## COG: lin2030 COG1680 # Protein_GI_number: 16801096 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Listeria innocua # 7 329 6 326 335 176 33.0 7e-44 MNQIAIQETIQRLINQQVVPGVAWGTITEDSLSEQYTGFLGNTGPFARQKISSASLYDLA SLTKVIGTTNRMLQLIDTNQLTFSTTVGEILPDYQGLSCSIGELLLHQSGLPADVVDKKN VTKKSLQEIILTHSLSERGKTTYSDLGYYLLGEIIQVLDRCSLEESFQTYVFQPMNLQHT SFTVSDFAQAVPTEITKQRGVIQGVVHDSKAYQLKAPIGSAGLFATLPDLLTFVQCFMNN RYPSGKPLFSEKMFDALWSMNQGGRTFGWEVKKTQAGAGYLYHTGFTGTAIGMKKETKEA LILLTNRIHPTREERGFLKARTKIYQQYF >gi|307679024|gb|GL456773.1| GENE 133 138427 - 138846 633 139 aa, chain + ## HITS:1 COG:SP0064 KEGG:ns NR:ns ## COG: SP0064 COG2893 # Protein_GI_number: 15900009 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Streptococcus pneumoniae TIGR4 # 1 138 1 134 134 70 36.0 1e-12 MKPKLILMSHGRMAEETLASTQMIVGELADAAIVSMTAEDGLSGTQAKLAAILKEAGNVP TLVLADLKGGTPCNVAMMAMGTYPQLRVVAGLNLAMAIEAAVSPVENVDELAAYLTQIGQ SAVTTIDLPELTDEEEFEE >gi|307679024|gb|GL456773.1| GENE 134 138880 - 139689 832 269 aa, chain - ## HITS:1 COG:no KEGG:EF0462 NR:ns ## KEGG: EF0462 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 269 1 269 269 499 100.0 1e-140 MNTLQLFKQAFFSVSELRHAKKMAFWKVILYAVFLSAILALPITKQVFSVLQEVQQDGQK IAEKLPDFSIENGTLQTKAKESGFIYQTDSIIFTFDPDGKRTAADVQKDLIGNAFGLAFL QDEFVVALPNSGATESILGTDQFIFPYSKGTLDGVNAQSIKTALSEAAIPWWTKLIVFLV AIYPVLIGLVLDLLIAAIGASLYSKLRFYSLRLIDCLKIITYCATVPVILSAILNFVNPM FNDGILVILLSLFFFFVTTKNEPRNIPGS >gi|307679024|gb|GL456773.1| GENE 135 139883 - 140473 737 197 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent [Streptococcus pneumoniae TIGR4] # 1 197 1 196 201 288 67 1e-76 MTYTLPELPYAYDALEPYIDVETMHLHHDKHHNTYVTNLNAAIEKHPELGEKSVEDLISD MNAIPEDIRTAVRNNGGGHANHTFFWKIMAPNAGGQPTGAIKEAIDETFGSFDEMKAAFK TAATGRFGSGWAWLVVNNGKLEITSTPNQDSPLMDGQTPVLGLDVWEHAYYLKYKNVRPD YIEAFWNVVNWDKVNEL >gi|307679024|gb|GL456773.1| GENE 136 140613 - 141593 1069 326 aa, chain + ## HITS:1 COG:lin2126 KEGG:ns NR:ns ## COG: lin2126 COG0253 # Protein_GI_number: 16801192 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate epimerase # Organism: Listeria innocua # 3 325 4 323 329 280 46.0 3e-75 MNVMMQKVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVGEGT HGTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQAPSLAE EVATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRFTAVAVPNPHLVAFVDHET LNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGTAMCASS LLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHLIEGSLTDLLNG AFEKITITETNEQKHYQEFLQTLSQK >gi|307679024|gb|GL456773.1| GENE 137 141743 - 142951 1512 402 aa, chain + ## HITS:1 COG:BH3670 KEGG:ns NR:ns ## COG: BH3670 COG1316 # Protein_GI_number: 15616232 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 5 305 2 303 304 234 42.0 2e-61 MKLWKKVVLGFLSVLLVVVAGVCAYGIKMYSDANSTINGIYQSVNRKSNKGATANIDAQE PFSVLLMGIDTGDLGRTEQGRSDTTMVVTINPKENKSTMISLDRDILTDIVGNDTQDKLN HAYAFGGAEMAINTVQELLDIPIHHYVSINMKGLKDLIDAVGGIEVDNTIGEFTLDGITV PAGKIKLDGTTGLAYARMRHEDPEGDVGRQRRQREVVEKIVRKVMSFDGVSKYRKILDAV EANVKTDLTWDDMMDIQSKYLSAFKTIDSEQLQGYSATIDDIYYQVLDPNSLYKTQTTLR KQLGLKEHASEREKDLAFYNQFSYAVTDTALIGESGDSSVNSSTSSSSTADTTAGQTEYN GNTQQAAEGAYDPNTYVDPNTYTDPNAYADPNTYVDPDAPQY >gi|307679024|gb|GL456773.1| GENE 138 143081 - 143782 1080 233 aa, chain + ## HITS:1 COG:L14408 KEGG:ns NR:ns ## COG: L14408 COG0363 # Protein_GI_number: 15673555 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Lactococcus lactis # 1 233 1 233 235 295 63.0 4e-80 MQIIRVANAEEGGKKAFELIKEGMNNGAKVLGLATGSTPETLYKEMTASDVDFTEMTSVN LDEYVGLGGEDEQSYRYFMNKHLFDKKPFKETFVPNGKAEDLDAASAEYEKIIDAHPVDI QILGIGQNGHIGFNEPGTPLDSLTHVVELTESTINANKRYFDKVEDVPTRAVSMGIGSIM KGKKMILMAYGEAKAEAIKGMIDGPVTTDMPASALQNHQDVVVIIDDAAASKL >gi|307679024|gb|GL456773.1| GENE 139 143878 - 144579 1074 233 aa, chain + ## HITS:1 COG:FN0215 KEGG:ns NR:ns ## COG: FN0215 COG1285 # Protein_GI_number: 19703560 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Fusobacterium nucleatum # 3 229 13 242 244 139 37.0 3e-33 MLQLTIPEIILRLVLAMVMGGAIGFERQYKNRPAGMRTHILVCMGAAIIALIQSQIAINA LKDALANPALTGVIRSDQARLIAQVVSGIGFLGAGTIIVTKQSVTGLTTAASLWTVAGLG IAVGMGYYTIALTSFIGVLFALTIVKRIIHVPTIKKLEIRYQHKQETKEFINQYFEEKHI EIYDVNFNVSWVDDTKIYTNIYTIDLPKGLTYADVIEDLSVSNNVTKLRLINV >gi|307679024|gb|GL456773.1| GENE 140 144738 - 145307 738 189 aa, chain + ## HITS:1 COG:TM0961 KEGG:ns NR:ns ## COG: TM0961 COG1704 # Protein_GI_number: 15643721 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Thermotoga maritima # 26 188 32 193 193 136 45.0 2e-32 MNKKNKFLSIIVVVVVIIGAFVMKAYNQLITLDNKVEAEWSQVENVMQRRADLIPNLVSS VQGSMTQEKEVLKEITEARKAYAGAKSSSEKGQANEQIEKGLGNFVTVLNEDYPKLASSE NVKTLMTQLEGSENRISVERRNYIQAVETYNQQISKFPDKIIAKLLGFEKKTNYVATEQG KEVPQVEFK >gi|307679024|gb|GL456773.1| GENE 141 145352 - 146638 1081 428 aa, chain + ## HITS:1 COG:BMEI0229 KEGG:ns NR:ns ## COG: BMEI0229 COG1512 # Protein_GI_number: 17986513 # Func_class: R General function prediction only # Function: Beta-propeller domains of methanol dehydrogenase type # Organism: Brucella melitensis # 118 262 28 170 253 91 34.0 3e-18 MDKKVEKIQEKVRLFYKKHQRNTTIVVVISLSMILILGMAAWYEGKGISYEAKQTALREK QHALQKKRDDILAGKMTEASTQTTINNFSKQEITGENELVTITGTNGQLNINDANIYVSD NAGIVSNQLKQKMFQLNQQLLENANGAQFMLITVPALPSGESVESYSNKIANQLGVGDRE KNNGVVFLMAIEDRESRLEVGYGLESILTDSYADDIINNEEVKEAFRDEDYNTGLNKIID QVSAAINSKTAQVDNELTNIQTELNTNTTKRNVLLMASIAGMLICAVYILQILRTRKLVK KMYQDYLNCLPTKAVLNNSEQTKKVLNKMKKTSFYCLYLNGATLFATKGKIRRATKRGSL LSIYPNAKKQSFGRLLVGDTLYSYDGSVLTYAYLNSQYNPSNHSSSGSSSGGSFGGGSFG GGGASGSW >gi|307679024|gb|GL456773.1| GENE 142 146678 - 147643 1142 321 aa, chain - ## HITS:1 COG:SP1180 KEGG:ns NR:ns ## COG: SP1180 COG0208 # Protein_GI_number: 15901045 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, beta subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 319 1 319 320 529 85.0 1e-150 MATYYEAINWNAIEDVIDKSTWEKLTEQFWLDTRIPLSNDLDDWRTLSDLEKTTVGYVFG GLTLLDTVQSESGMDQLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIDDI FEWTNTNKHLQYKAERINEIYKNGTPLEKKIASVFLETFLFYSGFYTPLYYLGNNKLANV AEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQDKLKDWMYNLLYELYENEERYTEELY DDLGWTEEVKTFLRYNANKALMNLGMDPLFADTANDVNPIVMNGISTGTSNHDFFSQVGN GYLLGTVEAMKDDDYLYGLDK >gi|307679024|gb|GL456773.1| GENE 143 147844 - 150003 2218 719 aa, chain - ## HITS:1 COG:SP1179 KEGG:ns NR:ns ## COG: SP1179 COG0209 # Protein_GI_number: 15901044 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 719 1 719 719 1144 77.0 0 MSLKEIKDVSYFKLNNEINRPVDGQIPLNKDKEALAAFFKENVEPNTRKFSSAEEKINFL MKEDFIETEFIEKYSMDFIEKLYAFLDEQHFQFKSFMAAYKFYSQYALKNNAGTEYLETY EDRVAFNALYFADGDEELALTLADEMIHQRYQPATPSFLNAGRKRRGELVSCFLVQVTDD MNSIGRSINSALQLSRIGGGVGITLSNLREAGAPIKGYDGAASGVVPVMKLFEDSFSYSN QLGQRQGAGVVYLNVFHPDIEMFLSAKKENADEKIRVKTLSLGVIVPDKFYELTRNNEDM YLFSPYSVEREYGVPYSYVDITKEYDNLVANPNIRKRKIKARDLENEISKLQQESGYPYI INIDTANKNNPIDGKIIMSNLCSEILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLM ESPDFGKSVRAMTRALTFVTDASEIDVVPTIQNGNRLSHTIGLGAMGLHTFFAKNHMEYG SEESLDFTDIYFMLLNYWTLMESNQIAKERNQVFHNFEKSDYASGAYFDKYIEGNFTPKF DKVKEIFKDIQIPTAEDWAALRDAVKKDGLYHQNRLAVAPNGSISYINDTSASIHPITRM IEERQEKKIGKIYYPAPYLANDTIPYYTSAYDMDMRKVIDVYATAQQHVDQGMSLTLFMR SEIPEGLYEWKETPKQTTRDLNILRHYAFNKGIKSIYYIRTFTDDAEEIGSNQCESCVI >gi|307679024|gb|GL456773.1| GENE 144 149984 - 150361 240 125 aa, chain - ## HITS:1 COG:L4702 KEGG:ns NR:ns ## COG: L4702 COG1780 # Protein_GI_number: 15672958 # Func_class: F Nucleotide transport and metabolism # Function: Protein involved in ribonucleotide reduction # Organism: Lactococcus lactis # 1 121 1 129 140 112 43.0 1e-25 MKLVYFSVTGQTRRFIKKLDLPAYELEPANPFFEINEPFILVIPTYDAEITEVVNDFLDY KSNQELLVGVAGGGNRNFAELFVYTAKDIARDYHVPLLYSFEFSGTDEDVETFKKVVEEI ESKRN >gi|307679024|gb|GL456773.1| GENE 145 150363 - 150587 372 74 aa, chain - ## HITS:1 COG:SP1178 KEGG:ns NR:ns ## COG: SP1178 COG0695 # Protein_GI_number: 15901043 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutaredoxin and related proteins # Organism: Streptococcus pneumoniae TIGR4 # 3 73 2 72 72 85 53.0 2e-17 MNVKIFSKNNCIQCKMAKRFLSENNIAFEEINIDAQPDAIDWLKEQGFQSVPVITSEATT VVGFRPDQLKQLAS >gi|307679024|gb|GL456773.1| GENE 146 151101 - 151574 680 157 aa, chain + ## HITS:1 COG:L192240 KEGG:ns NR:ns ## COG: L192240 COG1918 # Protein_GI_number: 15672170 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein A # Organism: Lactococcus lactis # 1 151 1 148 152 102 36.0 4e-22 MITLAQAEVGKVYTVESVQADVQTKKHLNNLGVVAGQAVVLVNYQNQNGIVLLHNSRIAL TDTILQAIHVEERSANEKVWVSLDTLKVGERATIVGIHGQGAVKRRLMDMGLTKGTVIFI RKVAPLADPIEINVRGYELTLRKSEAELILVEKEESE >gi|307679024|gb|GL456773.1| GENE 147 151571 - 153721 2171 716 aa, chain + ## HITS:1 COG:L190009 KEGG:ns NR:ns ## COG: L190009 COG0370 # Protein_GI_number: 15672169 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein B # Organism: Lactococcus lactis # 5 701 4 702 709 819 56.0 0 MTQQIALAGNPNSGKTTTFNMLTGANQYVGNWPGVTVERKEGVAKKDKTLIIQDLPGIYS LSPYTPEEIVARDYLLEDQPSVILNILDVTNLERNLYLTTQLIETGLPVVCALNMMDLLE KNGQTLNSEKLSYGLGVPVVEISALKNRGLDHALKQSKQRANAIETEVIYPSYDNRLEAA LAEIVDILGNTVPETQQRWYSLKLFERDVRTKEQLLLSSFQEKEIEEVIQITEKIFQDES EAIIINERYAFIARLIALCATKKTEMTFTHSDKIDRVVTNRWLALPIFAFVMWLVYYLSI QTVGTMGTDWLNDVFFGEWVPQFVGNWLAQWQVAPWMQSLILDGIIAGVGAVLGFLPQLA VLFLCLGFLEDCGYMARIAFVMDRLFRKFGLSGKSFIPMLIATGCGVPGVMASRTIENER DRRMTIMVTTFMPCSAKLPIIALIAGAFFPNQSWVSPSAYFLGVASIVLSGIALKKTKHF SGDPAPFIMELPAYHLPQLRSVVRHAYERCRSFVKKAGTIIFVSSILIWFMSHYSVTFQP VPESQSILAFLGKGLAVLFIPLGWGNWQGAVATITGLIAKENIIGTLGILFGNVKDVSEN GVEVWGALQHTFTPVAAYSFLTFNLLCAPCFAAIGAIRREMGDLKWTLGAIGYQCGLAYM VSFVIYQLGHVLVEKGTLTLGTFLAMGVVLAGFYFLIRKPKPGKESVQAITSLERG >gi|307679024|gb|GL456773.1| GENE 148 153728 - 153865 222 45 aa, chain + ## HITS:1 COG:no KEGG:EF0477 NR:ns ## KEGG: EF0477 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 45 1 45 45 75 100.0 6e-13 MATIILSILIFGTAGIITYRRIKKGESCEDCQTACPVKKEQSSQE >gi|307679024|gb|GL456773.1| GENE 149 154142 - 155311 974 389 aa, chain - ## HITS:1 COG:mlr0475 KEGG:ns NR:ns ## COG: mlr0475 COG0582 # Protein_GI_number: 13470699 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Mesorhizobium loti # 139 385 147 388 399 120 31.0 5e-27 MKLRANIIEKRGTLQVIVSYKDSNGKIRQKWKDTKLKKKGNKKRAEKIRDEFLLELESQL AMECKCANPDLLFYDYLLNYLEVSKKQVAFNTYVGYKHYVHNRIYKFFYPKKIKLNRLKP YHLQDFYQYMLNDDCTANTVIHYHAFIRKALQEAVITELISTNVADKVRKPKKKQFVSQV YNQHEILKLLDILSEEKLYLVVLLTAFYGLRRSEVLGLKWSAIDFLNKKIMINHVIIENP ENMSQLIKKDQTKNSSSYRTLPLVETIERALVNQAKWQQDNRILLGEDYILKDSEYVFTM EDGRLMKPQYVTHRLSKLIKKNGLKKIRFHDLRHSNASIMLDSGQNMKSIQEWLGHASYS TTANLYTHLTAGVKERAAEALENAFGFKE >gi|307679024|gb|GL456773.1| GENE 150 155355 - 155585 228 76 aa, chain - ## HITS:1 COG:no KEGG:EF0480 NR:ns ## KEGG: EF0480 # Name: not_defined # Def: excisionase, putative # Organism: E.faecalis # Pathway: not_defined # 1 76 1 76 76 121 100.0 1e-26 MDFQDYEKIFESYPSILKITDLTKMLNIGKNKAYNLLKDKSIENIKIGARYKIPKKAVIE YILKIQDEGKNHAIIE >gi|307679024|gb|GL456773.1| GENE 151 155922 - 157238 790 438 aa, chain - ## HITS:1 COG:FN0599 KEGG:ns NR:ns ## COG: FN0599 COG3464 # Protein_GI_number: 19703934 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 15 437 7 426 428 251 34.0 2e-66 MSITKNIKCTDENTSKSIKQILNIKDSHISFSKDAISKESIHGRMANVFTGLLTGEAPRC EYCGFDSVIRHSYQDSWIQLLPYQEVPTYLHLYKQRFRCTRCRHTFSAKTYYVAENCYIS QALKFAIAVDLKKKISMKDIAQRYFVSTKTVERVLDSFFEEPRKKPNYLPKHLLIDEFKG TSDCEGAMCFIISDADTGKIFDILDDRRNFKLRAYFQRFTLKARKRVTHIVMDMNASYDA VTKEVFPNARISIDRFHVIQQITRAFHKQRIQTMNQLKKSDPQAQKDYRKLKKYWRTILK KNAKLNYTSFKQFPLFHRKYLTESEVLDYLLSIDDQLRQSYEVYQELLAAFDAKDFTEFF DLIESLPHSMNEGFKKAIRYLRKHKEAITNSLKYPYSNGKLEGKNNLIKVIKRIAFGFQT FRHLRMRVLIQQNICEII >gi|307679024|gb|GL456773.1| GENE 152 157421 - 157675 176 84 aa, chain + ## HITS:1 COG:MT3742 KEGG:ns NR:ns ## COG: MT3742 COG3328 # Protein_GI_number: 15843250 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mycobacterium tuberculosis CDC1551 # 3 77 311 385 409 68 38.0 3e-12 MHILENGFEDAIQILSFPENIRRRIRTTNVLERLNEEIRRRERVIRIFPNINSITRIIGT LLMEKDTEWLASPRKYLEFNSNNI >gi|307679024|gb|GL456773.1| GENE 153 158003 - 158308 129 101 aa, chain + ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 2 99 293 390 391 100 55.0 6e-22 MIEKWQKTYPKVTQSLIKNQDLLTFYEFPPGIRRSIYSTNLIESFNKQIKKYSRRKEQFQ NEESLERFLVSIFDTYNQKFLNRSHKGFQQVTDTLASMFTE >gi|307679024|gb|GL456773.1| GENE 154 158613 - 159650 1029 345 aa, chain - ## HITS:1 COG:SPy0851 KEGG:ns NR:ns ## COG: SPy0851 COG3641 # Protein_GI_number: 15674884 # Func_class: R General function prediction only # Function: Predicted membrane protein, putative toxin regulator # Organism: Streptococcus pyogenes M1 GAS # 3 345 5 352 352 268 53.0 2e-71 MEEKLTPKIFLNKVLAGTATGIIVGLIPNAVLAAILKLFGENTLAVTITQMAVIFQLATP LLIGALIAVQFGFKPMQMLVVAGAAFVGSGVVKFNPDTATYIGAGTGDIINTMITASIAV GMILLIGEKFGSVAIVATPIVVGIGAGLIGYYLYPYVTKITAAIGDLINTFTTLQPILMS ILIACSFAFLIISPISTVAIGMAIQLNGVSAGAAAMGVAATTVVLVVNSWKVNKPGVTLA IALGAMKMMMPNLFRKPIILVPCLFTAIISAIPVALFSVSGTPASAGFGLVGLVGPLASL DAGLSIILLLISWFVVPIVAAFVGQILFEKILKLYDRKDVFEFLG >gi|307679024|gb|GL456773.1| GENE 155 159676 - 160614 779 312 aa, chain - ## HITS:1 COG:L157055 KEGG:ns NR:ns ## COG: L157055 COG1893 # Protein_GI_number: 15673305 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate reductase # Organism: Lactococcus lactis # 1 312 1 312 312 514 80.0 1e-145 MKIAIAGAGAMGSRFGLMLKQGGNDVLLIDGWQEHINAIKENGLKANYNGEEITVKVPIV NQNEVPTGEQFDLIILFTKAMQLEKMLQDVKPLIADHTEVLCLLNGIGHEDVIEKFVPME KIFIGNTMWTAGLEGPGKAKLFGSGSVELQNLGIGQEESAKKLAETLSASGLNAKYSDNI HYSIYRKACVNGTMNGLCTILDVNMAGLGATKPAHDMVVTIVNEFAAVAAKENVNLDIPE VIEHVETCFDPTTIGMHFPSMHQDLIKNNRLTEIDYINGAISRKGKKYGVVTPYCDFLTQ LVHSKEEILGAK >gi|307679024|gb|GL456773.1| GENE 156 161139 - 161738 358 199 aa, chain + ## HITS:1 COG:CAC1595 KEGG:ns NR:ns ## COG: CAC1595 COG0582 # Protein_GI_number: 15894873 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Clostridium acetobutylicum # 4 191 3 178 186 98 39.0 8e-21 MKSVEPIRDKKKIDAMKAILASGKYGQRNLVLFSIGINTAYRISDLRQLKLSDVVEISRG RVIVKERLAMKEQKTAKHNSVFISNKLRKVILDYVQSEFLEQLQVQDFSNYLFPSRKGAD TPLTRQSLWRIIHEAGTAVGLKEIGPHSMRKTFGYFLYKQGTKTEIIQSLLNHSSQRETL RYIGITQEDKDTAVKSLDL >gi|307679024|gb|GL456773.1| GENE 157 161787 - 162086 405 99 aa, chain + ## HITS:1 COG:no KEGG:NMC1958 NR:ns ## KEGG: NMC1958 # Name: not_defined # Def: hypothetical protein # Organism: N.meningitidis_FAM18 # Pathway: not_defined # 9 98 2 94 240 70 40.0 2e-11 MNEEKHPTFPDKYHLSRKESVYLLKKNIVELVYNAGEFEGLNTTLLQTEEIIKYNRADNV AVDAVLTVVILKRGFELLLNDVQEPLLETSKRINRIVAA >gi|307679024|gb|GL456773.1| GENE 158 162162 - 162497 231 111 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_0635 NR:ns ## KEGG: Lbuc_0635 # Name: not_defined # Def: filamentation induced by cAMP protein Fic # Organism: L.buchneri # Pathway: not_defined # 5 105 120 217 218 77 39.0 1e-13 MLTEDEVQNQYDEIMNRDISETEKALRLFLFISKNQIFWDGNKITALLTTNKIMFDWDLG LLSIPETVFEKFNVLLSIYYNSNEDIDVEKILDFMYSNCIFGINYLRKNKL >gi|307679024|gb|GL456773.1| GENE 159 162617 - 162724 148 35 aa, chain + ## HITS:1 COG:pli0049 KEGG:ns NR:ns ## COG: pli0049 COG3316 # Protein_GI_number: 18450331 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Listeria innocua # 1 35 1 35 226 67 100.0 9e-12 MNHFKGKQFKKDVIIVAVGYYLRYNLSYREVQELL >gi|307679024|gb|GL456773.1| GENE 160 162839 - 163219 344 126 aa, chain + ## HITS:1 COG:pli0049 KEGG:ns NR:ns ## COG: pli0049 COG3316 # Protein_GI_number: 18450331 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Listeria innocua # 1 121 75 195 226 225 98.0 1e-59 MDETYIKIKGRWHYLYRAIDADGLTLDIWLRKKWDTQAAYAFLKRLHKQFGEPKAIVTDK APSLGSALRKLQSVGLYTKTEHRTVKYLNNLIEQDHRPIKRRNKFYQSLRTASSTIKGME TPSRNI >gi|307679024|gb|GL456773.1| GENE 161 163522 - 164709 878 395 aa, chain + ## HITS:1 COG:STM2080 KEGG:ns NR:ns ## COG: STM2080 COG1004 # Protein_GI_number: 16765410 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted UDP-glucose 6-dehydrogenase # Organism: Salmonella typhimurium LT2 # 8 395 2 388 388 437 55.0 1e-122 MGINGKKRISVFGLGYVGLANSLLLGQHEDVVGYDIDSHKITLLEQGCSPLIDDYIESFI KEKRSNVSYTSDFEQAVLHGEYLVIATPTDYDESTDYFNTSSIEEVIEKAIQIKADAKFI IKSTIPIGYVATLKKQFPSVQTIIFCPEFLREGTALYDNLYPSRIIIGDTTDAAKEIGAL FLRNVWDKEVPVLYTSENEAEAIKLFANTYLALRVAYFNELDTFAQINGLESRQIIEGMG LDARIGSHYNNPSFGYGGYCLTKDTKQLKQNYRQVPERLISAIVASNDVRKDFVADKIMA KNPKTVGIYRLTMKHGSDNFRYSAIQDVMTRLQSKGVEIVIYEPTLSVPNFKGIQLVHSL EDFKQAAEIIVANRWDESLRDVAHKVYTHDVFVRD >gi|307679024|gb|GL456773.1| GENE 162 164773 - 165939 883 388 aa, chain + ## HITS:1 COG:mlr6163 KEGG:ns NR:ns ## COG: mlr6163 COG1215 # Protein_GI_number: 13475150 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Mesorhizobium loti # 40 388 50 395 424 238 34.0 1e-62 MVYGVLAISHIVFQIILCHSDHRRQNKKSFKDFHSNYQASVSVIVPAYNEVPQILKNCID SIVAQKIPDIEIIVVDDGSKNREELIEKVYDTYQSNQNVKILLPEENKGKRHCQKLGFDI AKGDIIVTVDSDTLLHDEDAVEKLIQRFANKKVGAVTGDVRVENKNKNILTRLITYRYWS AFHQERAAQSRFHVVMCCSGPFSAYRKEIIEEIKEKYITQYFLGENCTYGDDRHLTNLVL EAGYEVAFQSDSQVYTFVPETIGGYIKQQVRWNKSFYREMLWTIKFAHKHHFYMMYDLVM QFILPFMLVVSLIAMIEQTILYQNFGHLYQYLIVLVLIAIFRSLYGIYRTKDIGFLLFVI YGFMHVLLLLPVRFYALLTLKSTKWGTR Prediction of potential genes in microbial genomes Time: Tue Jul 5 18:43:52 2011 Seq name: gi|307679023|gb|GL456774.1| Enterococcus faecalis TX0312 genomic scaffold Scfld49, whole genome shotgun sequence Length of sequence - 3212 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 337 206 ## EF3075 hypothetical protein + Term 358 - 414 16.3 + Prom 530 - 589 6.4 2 2 Tu 1 . + CDS 669 - 3210 1921 ## EF3074 hypothetical protein Predicted protein(s) >gi|307679023|gb|GL456774.1| GENE 1 2 - 337 206 111 aa, chain + ## HITS:1 COG:no KEGG:EF3075 NR:ns ## KEGG: EF3075 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 111 1316 1426 1426 194 100.0 1e-48 WSLTAQLSQPKSATDSLPTATRLLLGAAPVSSFSNYNQPTELKNAVGTTSAISLNANNTA TRIIANQQFTGSNIYQLDFTFNNVKLEVPANQGVKGQQYQAAITWNLVTGP >gi|307679023|gb|GL456774.1| GENE 2 669 - 3210 1921 847 aa, chain + ## HITS:1 COG:no KEGG:EF3074 NR:ns ## KEGG: EF3074 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 711 1 732 1294 606 54.0 1e-171 MKRINWQRLATIGLCSSLVINAFSGVTAVAETVTSESSPTVASSTTQESTESSQETTETS REEVTQETEKQAEIPEVKTETTESVPENSSENDRQKSISPRWVPNDQVIYPRMIFVFTDE TGKAFADENLTLSGTYYKLARHTATSQWRPYADRYPIVSSNAGGGQYRVAVNATIPMPYD FLTNLPAGYTHNLYAIEQLKIDNTLKYVDSIVAPPGSINMTRYSEQQTSEAAQFGNYVKQ NLTQRDRIFSKNSANIFSLNSLALAPEITDVLTMLRTDSVERGPILVGFDGTTTYRETLN YVVTRKQVTEKFVDTNGVAITPPTGFTQNKKTPMTSNDFTFKQASTLPDTYQADGKTYKF KGWYKGKTKPNTLTTTKAPSYAVTYDGNDDLTVVYEEEAVTTLYPSLDVNFVDEKGVGFT PALTFSGKYRVQRTSDRLYTDLYDLTSKSKGSGQYTLSLNNGTMPLSPELLRVYGNDKPI NGTNRLNFSLDKLAINQQLKYVNSIELDTVKSVMKMYGYNYTSGSATIIDPNQVPTEYNL SAGNIALLGFDTDGVYFSKESSGVFNTLMGYASDGGKPLITMNLFSGNPVNASKLVYTVT RKQVTENFVDTNGTKITPPTGFTQGNQIPMTSNTFKYTSARALPASYTTGGKTYIFQGWY KGKTKPSTLTTSTTPTYNTTFDGNDDMTAVYKEANISANLTMRGAVDVIDNGATMEYWEV LLKNTGEAPLTSVKIKPTTDWATGISTPTELFILGTGQNTKVRPITKEQWEAGFEIPLDS SLPVGGQLTINLLGTKVTGQPNQVLKAAVEVTGNFNKLTASDTVRIKDLDQETKEPTGEG FISVPTF Prediction of potential genes in microbial genomes Time: Tue Jul 5 18:44:08 2011 Seq name: gi|307679022|gb|GL456775.1| Enterococcus faecalis TX0312 genomic scaffold Scfld52, whole genome shotgun sequence Length of sequence - 7618 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 3, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 420 - 468 15.1 1 1 Op 1 2/0.000 - CDS 475 - 2022 2084 ## COG0513 Superfamily II DNA and RNA helicases - Prom 2206 - 2265 4.5 - Term 2164 - 2196 1.1 2 1 Op 2 6/0.000 - CDS 2325 - 3698 1893 ## COG0770 UDP-N-acetylmuramyl pentapeptide synthase 3 1 Op 3 . - CDS 3777 - 4847 1329 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes - Prom 4905 - 4964 7.0 4 2 Op 1 . - CDS 4988 - 5434 563 ## COG1671 Uncharacterized protein conserved in bacteria 5 2 Op 2 . - CDS 5431 - 6459 981 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit - Prom 6485 - 6544 6.9 - Term 6488 - 6551 18.2 6 3 Tu 1 . - CDS 6553 - 7563 973 ## COG0524 Sugar kinases, ribokinase family Predicted protein(s) >gi|307679022|gb|GL456775.1| GENE 1 475 - 2022 2084 515 aa, chain - ## HITS:1 COG:lin0859 KEGG:ns NR:ns ## COG: lin0859 COG0513 # Protein_GI_number: 16799933 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Listeria innocua # 2 440 3 440 516 592 69.0 1e-169 MKFKELGLAPELLSAVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML NKIDADNRVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLKDRP HIVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQTLLF SATMPPAIKNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLDVQTPE LTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAA RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYLHVIENLTKK RMTPLRPPTEKEAFKGQLSAAVETIESDLEENGLDKYLESAEALLEKYSATDLAALLLKT VAKDPADAVPVKITPERPLPSNKKGFNKNGRGGGGGNNRNRNRGGNGKGGSYRGNKNHKD GDRNYKNSDRKNKDQRGGKRHNDKKRGFVIRENAK >gi|307679022|gb|GL456775.1| GENE 2 2325 - 3698 1893 457 aa, chain - ## HITS:1 COG:SPy1420 KEGG:ns NR:ns ## COG: SPy1420 COG0770 # Protein_GI_number: 15675337 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide synthase # Organism: Streptococcus pyogenes M1 GAS # 1 455 1 453 463 426 49.0 1e-119 MKLTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGENDGHRFIESAMA NGCQAAFWGQDLVDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKVTQQVI TFGFSQESQLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNALIAIGIGRYFQLTD SEIQKGLATAELTKNRTEWLKAANGAEILSDVYNANPTAMGLVLDSFSKMSKVGKRIAVL GDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAPANIHSFKKEEK NELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK >gi|307679022|gb|GL456775.1| GENE 3 3777 - 4847 1329 356 aa, chain - ## HITS:1 COG:SP1671 KEGG:ns NR:ns ## COG: SP1671 COG1181 # Protein_GI_number: 15901506 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Streptococcus pneumoniae TIGR4 # 3 351 5 343 347 387 55.0 1e-107 MKIILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKE VLHLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVG AGVLASANAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKP ANMGSSVGISKAENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGE VVKDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS KNELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLALNRFKQRQEFYNN >gi|307679022|gb|GL456775.1| GENE 4 4988 - 5434 563 148 aa, chain - ## HITS:1 COG:SA0636 KEGG:ns NR:ns ## COG: SA0636 COG1671 # Protein_GI_number: 15926358 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 3 146 4 147 152 140 47.0 8e-34 MKIFVDGDGSPVKETVIEVAVEKALDVVIVTSVDHYSLKDYPENVSFVYVDKGADAADFK IVQLIKKGDFLITQDYGLASLVLPKGVSVLHQLGYQYTKENIDGLLEQRYFSGQIRRKGG RTKGPKPFTDKDRTTFKQALIELVERSL >gi|307679022|gb|GL456775.1| GENE 5 5431 - 6459 981 342 aa, chain - ## HITS:1 COG:aq_1026 KEGG:ns NR:ns ## COG: aq_1026 COG0187 # Protein_GI_number: 15606321 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Aquifex aeolicus # 16 328 23 368 792 85 23.0 2e-16 MSVAHLLTVLENDEFIERIQKRPEAFIGTTGLVGLENLLVQTINGLLEFFIEKNQGKIAI QLSRQQISFQVSSTRPLVFEQKQVDLEPPFLYLSVLQAFSKQVGISIDQEKQRTIFIYHQ GQLKKRLLLPIEETQERIEVLFWPDTQIFGTESLSYMRVLQQCQQIAMLNPGLKILLTQE EEQKNLCYYPKGLSNYLFEKDNPLTRKAAPIIQAKQTELALVQFILSKNHAPQVQKTFVN GHYPSLGGTHYEGFLDGVVAAFNQFLEEQHYSLSVTADSFLAEFDFVLAITIPKPRYTDA TKTILRNTELYEVVKEVVFDELQHYFQRHPKWLEQGRSEGNE >gi|307679022|gb|GL456775.1| GENE 6 6553 - 7563 973 336 aa, chain - ## HITS:1 COG:TM0067 KEGG:ns NR:ns ## COG: TM0067 COG0524 # Protein_GI_number: 15642842 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Thermotoga maritima # 1 323 1 325 339 155 31.0 1e-37 MKIAAFGEVMLRFTPPEYLMLEQTEQLRMNFVGTGVNLLANLAHFQLETALITKLPANRL GEAGKAALRKLGISDQWVGEKGDHIGSFFAEMGYGIRPTQVTYQNRHQSAFGISEAKDYD FEAFLAEVDMVHICGISLSLTEKTRDAALILAQKAHAYQKKVCFDFNYRPSLNTANSALF MRQQYERILPYCDIVFGSRRDLVELLGFIPREDLEGEAQETELIQRFMSQYNLEWFAGTT RSHSQNQNYLSGYLYTQNEYQQSEKRPLLNLDRIGAGDAYAAGILYGYSQNWSLEKAVTF ATVNGVLAHTIQGDIPLTTVKQVNHVLEHPNLDLIR Prediction of potential genes in microbial genomes Time: Tue Jul 5 18:44:12 2011 Seq name: gi|307679021|gb|GL456776.1| Enterococcus faecalis TX0312 genomic scaffold Scfld55, whole genome shotgun sequence Length of sequence - 1799 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + SSU_RRNA 284 - 1799 99.0 # EF653454 [D:1..1526] # 16S ribosomal RNA # Enterococcus faecalis # Bacteria; Firmicutes; Lactobacillales; Enterococcaceae; Enterococcus. Prediction of potential genes in microbial genomes Time: Tue Jul 5 18:44:13 2011 Seq name: gi|307679020|gb|GL456777.1| Enterococcus faecalis TX0312 genomic scaffold Scfld57, whole genome shotgun sequence Length of sequence - 944 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 1 - 213 93 ## EF0838 pyridoxal phosphate-dependent enzyme, putative 2 1 Op 2 . + CDS 217 - 943 980 ## EF0839 hypothetical protein Predicted protein(s) >gi|307679020|gb|GL456777.1| GENE 1 1 - 213 93 70 aa, chain + ## HITS:1 COG:no KEGG:EF0838 NR:ns ## KEGG: EF0838 # Name: not_defined # Def: pyridoxal phosphate-dependent enzyme, putative # Organism: E.faecalis # Pathway: Selenocompound metabolism [PATH:efa00450]; Aminoacyl-tRNA biosynthesis [PATH:efa00970] # 1 70 299 368 368 127 98.0 2e-28 RDIYRASVKVDGRKTAKEVIQALKAESPAIYTREYQANNGIIEFDIRSVNQEEMNKIVQR LQEIMDTKEK >gi|307679020|gb|GL456777.1| GENE 2 217 - 943 980 242 aa, chain + ## HITS:1 COG:no KEGG:EF0839 NR:ns ## KEGG: EF0839 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 242 1 242 247 462 99.0 1e-129 MSLKPNYLEERICLNVLANSVENAQACYEAAEGHVVLGVLSKNYETDEAAIDDMKKYQAA TNNALSVGLGAGDPNQSQMVARLSEVLQPQHVNQVFTGVGASRALLRQDETVINGLVSPT GKVGYVNIATGPLSSGAPAAEVPIETTIKLLKDMGGSSIKYFPMKGLAHKEEYQAVAAAC AKYDFYLEPTGGIDLENFEEIVQIAVDAGVKKIIPHVYSSIIDQETGDTRTEDVKTLLTM MK Prediction of potential genes in microbial genomes Time: Tue Jul 5 18:44:47 2011 Seq name: gi|307679019|gb|GL456778.1| Enterococcus faecalis TX0312 genomic scaffold Scfld59, whole genome shotgun sequence Length of sequence - 97113 bp Number of predicted genes - 88, with homology - 87 Number of transcription units - 34, operones - 20 average op.length - 3.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 120 - 179 13.1 1 1 Op 1 40/0.000 + CDS 215 - 904 842 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 2 1 Op 2 . + CDS 894 - 2075 1247 ## COG0642 Signal transduction histidine kinase + Term 2307 - 2359 12.1 + Prom 2325 - 2384 5.4 3 2 Tu 1 . + CDS 2410 - 3681 1702 ## COG0172 Seryl-tRNA synthetase + Term 3691 - 3735 8.5 - Term 3779 - 3819 10.5 4 3 Tu 1 . - CDS 3850 - 5331 2128 ## COG0516 IMP dehydrogenase/GMP reductase - Prom 5360 - 5419 8.6 - Term 5413 - 5459 5.0 5 4 Tu 1 . - CDS 5489 - 7171 1005 ## EF3294 hypothetical protein - Term 7249 - 7278 -0.3 6 5 Tu 1 . - CDS 7338 - 8027 917 ## COG4858 Uncharacterized membrane-bound protein conserved in bacteria - Term 8082 - 8107 -0.8 7 6 Op 1 4/0.000 - CDS 8136 - 9251 1533 ## COG0012 Predicted GTPase, probable translation factor 8 6 Op 2 1/0.000 - CDS 9308 - 9493 191 ## COG4481 Uncharacterized protein conserved in bacteria - Prom 9534 - 9593 6.0 9 6 Op 3 25/0.000 - CDS 9611 - 10501 1195 ## COG1475 Predicted transcriptional regulators 10 6 Op 4 15/0.000 - CDS 10494 - 11255 943 ## COG1192 ATPases involved in chromosome partitioning 11 6 Op 5 . - CDS 11271 - 11987 890 ## COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division - Prom 12090 - 12149 4.7 - Term 12188 - 12232 12.1 12 7 Tu 1 . - CDS 12235 - 13221 847 ## EF3301 hypothetical protein - Term 13682 - 13735 7.5 13 8 Tu 1 . - CDS 13781 - 15553 1640 ## COG4716 Myosin-crossreactive antigen - Prom 15606 - 15665 4.1 - Term 15700 - 15749 12.1 14 9 Op 1 . - CDS 15753 - 16430 915 ## COG0176 Transaldolase 15 9 Op 2 6/0.000 - CDS 16458 - 16814 503 ## COG3731 Phosphotransferase system sorbitol-specific component IIA 16 9 Op 3 6/0.000 - CDS 16838 - 17833 1107 ## COG3732 Phosphotransferase system sorbitol-specific component IIBC 17 9 Op 4 . - CDS 17850 - 18404 710 ## COG3730 Phosphotransferase system sorbitol-specific component IIC 18 9 Op 5 . - CDS 18404 - 18889 523 ## EF3308 transcriptional regulator SrlR 19 9 Op 6 . - CDS 18886 - 20748 1739 ## COG3711 Transcriptional antiterminator 20 9 Op 7 . - CDS 20764 - 21564 1117 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - Prom 21634 - 21693 8.1 21 10 Op 1 11/0.000 - CDS 22406 - 25555 2948 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 22 10 Op 2 27/0.000 - CDS 25569 - 26732 924 ## COG0732 Restriction endonuclease S subunits 23 10 Op 3 . - CDS 26722 - 28317 1679 ## COG0286 Type I restriction-modification system methyltransferase subunit - Prom 28357 - 28416 7.7 - Term 28707 - 28748 10.1 24 11 Op 1 . - CDS 28812 - 29669 485 ## gi|315158692|gb|EFU02709.1| hypothetical protein HMPREF9508_01488 25 11 Op 2 . - CDS 29659 - 29796 105 ## - Term 30056 - 30103 3.1 26 12 Op 1 . - CDS 30283 - 30609 213 ## gi|315158694|gb|EFU02711.1| conserved domain protein 27 12 Op 2 . - CDS 30646 - 31011 422 ## Bcell_3752 hypothetical protein 28 12 Op 3 . - CDS 31048 - 31263 204 ## gi|314938405|ref|ZP_07845696.1| helix-turn-helix protein - Prom 31312 - 31371 4.6 + Prom 31269 - 31328 6.3 29 13 Tu 1 . + CDS 31392 - 31727 306 ## gi|307295149|ref|ZP_07574989.1| helix-turn-helix protein + Term 31739 - 31772 2.0 - Term 31724 - 31764 3.1 30 14 Op 1 . - CDS 31803 - 33800 719 ## Dred_0377 hypothetical protein - Prom 33824 - 33883 6.0 - Term 33822 - 33883 15.4 31 14 Op 2 . - CDS 33898 - 34173 365 ## gi|307277177|ref|ZP_07558281.1| DNA binding domain, excisionase family - Prom 34301 - 34360 8.8 + Prom 34298 - 34357 6.3 32 15 Tu 1 . + CDS 34405 - 35121 426 ## gi|315158700|gb|EFU02717.1| hypothetical protein HMPREF9508_01496 + Prom 35123 - 35182 4.0 33 16 Tu 1 . + CDS 35263 - 36426 518 ## COG0582 Integrase - Term 36433 - 36501 -0.3 34 17 Op 1 11/0.000 - CDS 36503 - 38401 2567 ## COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division 35 17 Op 2 . - CDS 38421 - 39818 1775 ## COG0486 Predicted GTPase - Prom 39923 - 39982 6.9 - Term 39964 - 40029 16.5 36 18 Op 1 3/0.000 - CDS 40051 - 41928 2215 ## COG1404 Subtilisin-like serine proteases 37 18 Op 2 . - CDS 41852 - 44686 3139 ## COG1404 Subtilisin-like serine proteases - Prom 44814 - 44873 7.6 + Prom 45333 - 45392 5.6 38 19 Op 1 . + CDS 45526 - 45840 383 ## SPH_1425 conjugative transposon protein 39 19 Op 2 . + CDS 45859 - 46242 594 ## SPSINT_2122 hypothetical protein 40 19 Op 3 1/0.000 + CDS 46271 - 47656 610 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins + Term 47750 - 47796 1.7 + Prom 47750 - 47809 1.9 41 19 Op 4 . + CDS 47834 - 49039 482 ## COG2946 Putative phage replication protein RstA 42 19 Op 5 . + CDS 49082 - 49303 369 ## SPG_1238 Tn5251 hypothetical protein 43 20 Op 1 . + CDS 49420 - 49917 675 ## SPG_1237 Tn5251 hypothetical protein + Term 49919 - 49956 3.1 44 20 Op 2 . + CDS 50006 - 50398 138 ## SPH_1415 conjugative transposon membrane protein 45 20 Op 3 . + CDS 50382 - 52829 1469 ## SPCG_0166 hypothetical protein 46 20 Op 4 . + CDS 52832 - 55009 980 ## SPSINT_2115 hypothetical membrane protein 47 20 Op 5 . + CDS 55006 - 56007 542 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) 48 20 Op 6 . + CDS 56025 - 56936 708 ## SPSINT_2113 hypothetical protein + Term 56946 - 56990 11.1 + Prom 57046 - 57105 6.5 49 21 Tu 1 . + CDS 57313 - 59232 1026 ## COG0480 Translation elongation factors (GTPases) - Term 59494 - 59557 11.1 50 22 Tu 1 . - CDS 59578 - 59931 420 ## SPH_1408 transcriptional regulator, putative - Prom 60011 - 60070 7.9 + Prom 60154 - 60213 3.8 51 23 Op 1 . + CDS 60436 - 60858 241 ## SAG0919 Tn916 hypothetical protein 52 23 Op 2 . + CDS 60855 - 61085 146 ## SPH_1405 hypothetical protein + Term 61128 - 61156 -1.0 + Prom 61449 - 61508 3.9 53 24 Op 1 . + CDS 61546 - 61749 276 ## SPH_1403 hypothetical protein 54 24 Op 2 . + CDS 61831 - 63048 865 ## COG0582 Integrase - Term 63284 - 63316 4.2 55 25 Op 1 . - CDS 63355 - 63528 59 ## gi|307268895|ref|ZP_07550259.1| hypothetical protein HMPREF9498_01025 56 25 Op 2 . - CDS 63513 - 64382 1049 ## COG1767 Triphosphoribosyl-dephospho-CoA synthetase 57 25 Op 3 . - CDS 64389 - 65579 1279 ## COG0281 Malic enzyme - Term 65598 - 65642 8.2 58 26 Op 1 1/0.000 - CDS 65679 - 67076 1756 ## COG5016 Pyruvate/oxaloacetate carboxyltransferase 59 26 Op 2 7/0.000 - CDS 67069 - 67617 447 ## COG3697 Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) 60 26 Op 3 6/0.000 - CDS 67598 - 69130 2129 ## COG3051 Citrate lyase, alpha subunit 61 26 Op 4 6/0.000 - CDS 69133 - 70020 1113 ## COG2301 Citrate lyase beta subunit 62 26 Op 5 5/0.000 - CDS 70008 - 70316 386 ## COG3052 Citrate lyase, gamma subunit 63 26 Op 6 . - CDS 70322 - 71332 956 ## COG3053 Citrate lyase synthetase 64 26 Op 7 . - CDS 71347 - 71481 239 ## EF3323 hypothetical protein 65 26 Op 8 9/0.000 - CDS 71503 - 72618 1533 ## COG1883 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit 66 26 Op 9 . - CDS 72648 - 73049 571 ## COG0511 Biotin carboxyl carrier protein 67 26 Op 10 . - CDS 73033 - 73395 409 ## EF3326 hypothetical protein - Prom 73425 - 73484 4.0 + Prom 73588 - 73647 7.5 68 27 Op 1 1/0.000 + CDS 73800 - 75197 1723 ## COG2851 H+/citrate symporter + Term 75209 - 75253 4.8 + Prom 75234 - 75293 8.2 69 27 Op 2 . + CDS 75331 - 76026 956 ## COG1802 Transcriptional regulators + Term 76037 - 76074 3.1 - Term 76023 - 76064 5.5 70 28 Tu 1 . - CDS 76070 - 76792 668 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 76857 - 76916 8.4 - Term 76901 - 76960 5.0 71 29 Op 1 16/0.000 - CDS 76970 - 77746 1032 ## COG1847 Predicted RNA-binding protein 72 29 Op 2 22/0.000 - CDS 77761 - 78588 862 ## COG0706 Preprotein translocase subunit YidC 73 29 Op 3 . - CDS 78588 - 78950 327 ## COG0594 RNase P protein component - Prom 79036 - 79095 4.4 - Term 79050 - 79109 9.1 74 30 Tu 1 . - CDS 79148 - 79282 223 ## PROTEIN SUPPORTED gi|29377774|ref|NP_816928.1| 50S ribosomal protein L34 - Prom 79331 - 79390 7.3 + Prom 79679 - 79738 4.2 75 31 Op 1 16/0.000 + CDS 79805 - 81148 1435 ## COG0593 ATPase involved in DNA replication initiation + Prom 81167 - 81226 5.2 76 31 Op 2 6/0.000 + CDS 81350 - 82480 1474 ## COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) + Term 82647 - 82690 -0.8 + Prom 82858 - 82917 9.6 77 31 Op 3 9/0.000 + CDS 83061 - 83306 338 ## COG2501 Uncharacterized conserved protein 78 31 Op 4 9/0.000 + CDS 83293 - 84420 1132 ## COG1195 Recombinational DNA repair ATPase (RecF pathway) 79 31 Op 5 24/0.000 + CDS 84417 - 86366 2507 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 80 31 Op 6 . + CDS 86422 - 88923 3225 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit + Term 88924 - 88976 15.3 + Prom 88960 - 89019 7.9 81 32 Op 1 24/0.000 + CDS 89098 - 89400 510 ## PROTEIN SUPPORTED gi|29374668|ref|NP_813820.1| 30S ribosomal protein S6 82 32 Op 2 21/0.000 + CDS 89445 - 90011 620 ## COG0629 Single-stranded DNA-binding protein 83 32 Op 3 . + CDS 90037 - 90276 397 ## PROTEIN SUPPORTED gi|29374670|ref|NP_813822.1| 30S ribosomal protein S18 + Term 90294 - 90331 7.3 + Prom 90318 - 90377 3.7 84 33 Op 1 9/0.000 + CDS 90481 - 92457 785 ## PROTEIN SUPPORTED gi|162447066|ref|YP_001620198.1| bipartite protein: signaling protein and ribosomal protein L9 85 33 Op 2 16/0.000 + CDS 92454 - 92915 759 ## PROTEIN SUPPORTED gi|227518097|ref|ZP_03948146.1| 50S ribosomal protein L9 + Term 92932 - 92964 1.5 + Prom 92931 - 92990 7.4 86 33 Op 3 3/0.000 + CDS 93188 - 94555 1766 ## COG0305 Replicative DNA helicase + Term 94560 - 94592 2.5 + Prom 94557 - 94616 5.0 87 33 Op 4 . + CDS 94681 - 96084 1578 ## COG0104 Adenylosuccinate synthase + Term 96098 - 96152 7.0 + Prom 96127 - 96186 10.5 88 34 Tu 1 . + CDS 96209 - 97078 1000 ## COG1307 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|307679019|gb|GL456778.1| GENE 1 215 - 904 842 229 aa, chain + ## HITS:1 COG:lin2516 KEGG:ns NR:ns ## COG: lin2516 COG0745 # Protein_GI_number: 16801578 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 3 227 5 230 231 229 53.0 4e-60 MKILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMDG MEVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRSQ MQLTKEEPDELEVGPLMINKDSHEVKTIEGKEIQLTALEFGILYLLASHPNRVFSADEIF ERVWQQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKIDAR >gi|307679019|gb|GL456778.1| GENE 2 894 - 2075 1247 393 aa, chain + ## HITS:1 COG:lin2515 KEGG:ns NR:ns ## COG: lin2515 COG0642 # Protein_GI_number: 16801577 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 76 384 76 379 380 187 36.0 2e-47 MLVKPKKIEKQKRITLTSKEISELLAEAIVTIVLLLLLNVSIMFLLGQLLSENSPLAGVI WATKDAVAKELNTDLFWSWNKFVLPIFFLVDAAVLYWRLIRRYHQMQLRHIISELHYIAD GNYNHRIPFELSGDLAKVVTSINGLVDSTVAAIEDERRIEKSKDELITNVSHDIRTPLTS IIGYLGLIEDRQFHSQEDLLKYTHTAYVKAKQMKLLVDDLFEYTKVRQPSVPIHTTTFDM AQLIEQLAADFELEAKKINMQIQVKANPASLMMEGDTEKLVRVFNNLLSNALKYGKGGHH IVMEVDKVGTEAIIAVRNDGPAIPKHSLDQLFDRFYRVEESRSQETGGTGLGLAIAQSIV ALHGGYIYAKSDQKWTSFIIHLPLQRTNKKSES >gi|307679019|gb|GL456778.1| GENE 3 2410 - 3681 1702 423 aa, chain + ## HITS:1 COG:SP0411 KEGG:ns NR:ns ## COG: SP0411 COG0172 # Protein_GI_number: 15900330 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 423 1 423 424 612 73.0 1e-175 MLDVKMMRQNFDEVKAKLQTRGVKEEILVEFLRLDESRRDLLVKVEEMKKYRNDVSAEIA QLKRNKEDATAKIAEMKEVGGNIKALDAEINAIDEELRGITTTLPNLPDDSVPVGAGEEE NVEVRRWSEPRTFAFEPKPHWEVAENLGILDFERGAKVAGSRFVYYKGLGARLERALYNF MLDLHVYEHGYTEMITPYIVNDTAMFGTGQFPKFKEDVFQLQDTDLTLIPTAEVPLTNYY NNEILDGKDLPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFNKVEMVKFSDAEHSYEELE KMTNNAEEILQKLGLPYRVMALSTGDMGFSAAKTYDLEVWIPAQETYREISSCSNCEDFQ ARRAMIRYRDENDKVQYAHTLNGSGLAVGRTVAAILENYQNEDGSVTVPEVLVPYMGNLT VIK >gi|307679019|gb|GL456778.1| GENE 4 3850 - 5331 2128 493 aa, chain - ## HITS:1 COG:L21264_3 KEGG:ns NR:ns ## COG: L21264_3 COG0516 # Protein_GI_number: 15672202 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Lactococcus lactis # 209 493 1 285 285 464 84.0 1e-130 MSNWETKFAKKGLTFDDVLLIPAESHVLPNDVDMSVQLAKNIKLNIPLMSASMDTVTDSN MAIAMARQGGLGVVHKNMTVAQQADEVRKVKRSESGVIIDPFFLTPTNLVADAEELMSRY RISGVPIVETMENRKLVGIITNRDMRFVTDYQIKIEEVMTKDHLVTAPVGTSLKDAEKIL QKHKIEKLPIVDEAGRLSGLITIKDIEKVIEFPNAAKDEHGRLLVAAAVGVTSDTFERAE ALLEAGADAIVIDTAHGHSAGVIRKIKEIRETFPEATLIAGNVATAEATKALYDVGVDVV KVGIGPGSICTTRVVAGVGVPQLTAIYDAASVAREYGKAIIADGGIKYSGDIVKALAAGG HAVMLGSMLAGTDESPGEFEIYQGRRFKTYRGMGSLGAMEKGSSDRYFQGSVNEANKLVP EGIEGRVAYKGSVSDIVFQLIGGLKSGMGYVGAADLKALREEAQFVQMSGNGLKESHPHD VQITKEAPNYSVQ >gi|307679019|gb|GL456778.1| GENE 5 5489 - 7171 1005 560 aa, chain - ## HITS:1 COG:no KEGG:EF3294 NR:ns ## KEGG: EF3294 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 560 1 560 560 929 98.0 0 MGQQVKSWCRQHERLLIFISFLLLSGLSLYFVYFQENFLRASDFRFHQNRVEGLALAIKN NDWFPKINYFFLGGYGYASSLFYPDAYLYLPALLRVLGLSFVASMAIFVFAVNLATFSLT YYAGRLMALSKKRSYLFAILYGLSIYRMQDLFNRQALGEFLALSFFPLVLASLFLLRKGI TKYWPLLTLAMTGIGLAHFISIEMVSIWIGLYILFYWQQFFKKEVLWALAKAAGLTLLWL AFYLLPVAEQMKNQVFKVTSNPLTYISERSYPIVSLFINSLKSSVFHAKTANLGTLLFVG LVVAVVSLASKKIQNKRFIGLTLVLLLMVTTLFPWHWLNHTPLNTIQFPWRFLGILSVML AFFIAQDEWGVFRKSWTVALLVFLAISNLGIYQYQSIQSQQGHLLTKAEYEQPTPFYIGA GHEYLPDEINYQELLKQKKRQLDYSAEQVTITNVRMPYGKISFDYQVVNQSAKVTVPFIY YLGYQATIQMKNQTGAKKMNLTNQGGLAALSLSGTGHVDIRYQRTKVQKIGTMMTLLSVG GFGFSRFLQQKKKHKIKEQR >gi|307679019|gb|GL456778.1| GENE 6 7338 - 8027 917 229 aa, chain - ## HITS:1 COG:SPy1828 KEGG:ns NR:ns ## COG: SPy1828 COG4858 # Protein_GI_number: 15675655 # Func_class: S Function unknown # Function: Uncharacterized membrane-bound protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 18 224 4 212 218 129 33.0 4e-30 MEAEALRAIVAENRQLEQNLTKRNEQYIFDLKKSLKAANLSEEELALALHGILPELVAGQ KTGKTARQLFGTVSERTEAILNKPAEVKEPAGWMIWLDNTLLLLGLLTIMLAAMSLFSKG TAQPLGLTTYILGAMAGGYVFYLMHKYVYRFDRQGGDKSKRPGWLKTTAILFGGMFLWIA VFAGSAMLPPVINPILDPMIALVIGALAFVARYFFKKKYNIQGSFMTRQ >gi|307679019|gb|GL456778.1| GENE 7 8136 - 9251 1533 371 aa, chain - ## HITS:1 COG:SPy0006 KEGG:ns NR:ns ## COG: SPy0006 COG0012 # Protein_GI_number: 15674254 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted GTPase, probable translation factor # Organism: Streptococcus pyogenes M1 GAS # 1 371 1 371 371 552 78.0 1e-157 MALTAGIVGLPNVGKSTLFNAITKAGAEAANYPFATIDPNVGMVEVPDARLQRLTELVKP KKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDENIMREQNRDA DFVDPLADIDTINLELILADLDSINKRYTRVAKMAKAKDKEAVEELAVLDKIKPVLEEGL SARTIEFTPEEEKIVKSLFLLTTKPVLYVANVSEDEVADPDNNEYVQQVRNFATSENAEV IVVSARAEEEIAELDSEEDKAEFLEAMGIEQSGLDQLIRAAYDLLGLATYFTAGEQEVRA WTFRKGIKAPQAAGIIHSDFERGFIRAETVSYEDLDKYGNMQAAKEAGRVRLEGKDYVVQ DGDVMLFRFNV >gi|307679019|gb|GL456778.1| GENE 8 9308 - 9493 191 61 aa, chain - ## HITS:1 COG:BH4052 KEGG:ns NR:ns ## COG: BH4052 COG4481 # Protein_GI_number: 15616614 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 2 61 5 64 65 82 60.0 2e-16 MYDLGDIVEMKKPHACQANRWQIVRMGADIKIKCTNCGHIVMMPRRDFTKKLKKVIEKKA D >gi|307679019|gb|GL456778.1| GENE 9 9611 - 10501 1195 296 aa, chain - ## HITS:1 COG:lin2922 KEGG:ns NR:ns ## COG: lin2922 COG1475 # Protein_GI_number: 16801981 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 4 296 2 283 283 281 55.0 7e-76 MNKGKGLGRGIDALFQDIAKLEDVDVKNEQVTEILLNELRPNPYQPRKTFDETSLQELAN SILHSGVFQPIIVRKSAVKGYEIIAGERRFRASKLAGKEKIPAIIREFDEESMMQVAVLE NLQREDLNPLEEAEAYEMLMKNLKLTQAEVAERLGKSRPYIANYLRLLTLPDAVKAMVQK QSMSMGQARTLLGLKNKEQLLPLANRCIKDNLTVRQLEQLVAELNETQGKKGKKAKKAIK EKPIYIRESEDRLMDKFGTTVAIQEKEGKGKIEIEYLSSSDLARILDILDIHFDEE >gi|307679019|gb|GL456778.1| GENE 10 10494 - 11255 943 253 aa, chain - ## HITS:1 COG:BH4058 KEGG:ns NR:ns ## COG: BH4058 COG1192 # Protein_GI_number: 15616620 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Bacillus halodurans # 1 252 1 252 253 356 70.0 2e-98 MTRIISVANQKGGVGKTTTTVNLGACLANLGKKVLLIDIDAQGNATSGMGVPKPDVAHDV YDVLVNEEPITSVVQHTSRENLDIVPATIQLAGAEIELTSMMARESRLKLAIDEVRDMYD FVLIDCPPSLGHLTINAFTASDSILIPVQCEYYALEGLSQLLNTIRLVQKHFNPELKIEG VLLTMYDARTNLGAEVVEEVRKYFREKVYDTIIPRNVRLSEAPSHGLPIIDYDIRSKGAE VYQALAKEVLENE >gi|307679019|gb|GL456778.1| GENE 11 11271 - 11987 890 238 aa, chain - ## HITS:1 COG:lin2934 KEGG:ns NR:ns ## COG: lin2934 COG0357 # Protein_GI_number: 16801993 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division # Organism: Listeria innocua # 1 238 1 238 238 306 63.0 3e-83 MLPEEFRQLLAAKGIELTDQQMTQFDQYFHLLVEWNEKMNLTAITEEKEVYLKHFYDSVS LAFFEDFASDKAICDVGAGAGFPSIPLKIVFPSLNVTIVDSLNKRITFLTELVNQLGLAN VSLYHDRAETFGQKAEFRGAFDYVTARAVARLNVLSELCLPLVKKEGYFLALKASKSEEE INEAKPAIATLGGQFQKEVGFTLPITADERHIVVIQKKKETPKKYPRKPGLPNKQPIK >gi|307679019|gb|GL456778.1| GENE 12 12235 - 13221 847 328 aa, chain - ## HITS:1 COG:no KEGG:EF3301 NR:ns ## KEGG: EF3301 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 328 1 328 328 638 99.0 0 MGRWQELQQAMSAGVEAAIDAGWDRQAVYGLVESAIKDTRFLPLEQAKTAVAELFSEVEE VGSSAYERLFRFSAYRPQEKLSLLLWQLGAVLDQHGMLQLVGPYRFSKTVAPHATFWDLL AKTVQKAYPLGLLGSFNQEKAKKIHQLRMYIDRQNIMYIRDFFKQEGDADEQALKRYVFA AKPQGMGGRKLKKSSARLHNKYPEGASYSLINKKRLTPNFHSEFILNEEGTFVTQWDVLV EDWRGRLISNPAYYQAAKNNEYQEKVLNGESFNYANRNNRTHELLDSSPPGRFDHQLRKT AKKGWLSPRIQEYDYRRERQIKCDDYSK >gi|307679019|gb|GL456778.1| GENE 13 13781 - 15553 1640 590 aa, chain - ## HITS:1 COG:L180241 KEGG:ns NR:ns ## COG: L180241 COG4716 # Protein_GI_number: 15672937 # Func_class: S Function unknown # Function: Myosin-crossreactive antigen # Organism: Lactococcus lactis # 1 590 1 587 587 934 73.0 0 MRYTNGNYEAFARPRKPKGVDDKSAYIVGGGLAGLATAVFLIRDGQMKGENIHIFEELTL SGGSLDGKFIPHDGFVTRGGREMENHFECLWDLFRSVPSLEVEDASVLDEFYRLDLDDPN SSNCRIIHNRGERVPDDGQFTLSKKAQKEIVDLFMTSEDQLIGKKIEDVFGEEFFESNFW IYWCSMFAFEKWHSAIEMRRYIMRFIHHIKGLPDFTALKFTKYNQYESLVKPLLSFLTNQ GVDFQYETTINDIQVDIKGDTKVARRLLLTQAGKTKEIPLTENDLVFVTNGSITESSTQG DHHTPAPITHELGGSWNLWKNLAKQSPEFGHPEVFCENLPDESWFVSATITWENFDIEPY LSRLTHRKLRTGKIVTGGIITIKDSNWMMSFAMHRQPHFKEQNDQQSITWVYGLLSNKPG NYIKKPIEQCTGQEITQELLYHLGVPEGEIERISEESATTIPVYMPFITSYFMLREPGDR PLVVPNGSKNLAFIGNFADTERDTVFTTEYSVRTAMEAVYQLLEVERGVPEVFASAYDLR VLANSVYYLSDKKKLTEMDMPFVERKMVEHFVKKFEDTYIGDILRENHLI >gi|307679019|gb|GL456778.1| GENE 14 15753 - 16430 915 225 aa, chain - ## HITS:1 COG:SPy2048 KEGG:ns NR:ns ## COG: SPy2048 COG0176 # Protein_GI_number: 15675818 # Func_class: G Carbohydrate transport and metabolism # Function: Transaldolase # Organism: Streptococcus pyogenes M1 GAS # 1 215 1 216 222 256 62.0 2e-68 MEFMLDTINLEAIRKYQKILPLAGVTSNPSIVKQAGKIDFFAQMKEIKKTIGQASLHVQV VGQTTEEMLEDAQTIVQQLGQETFIKIPVNEAGLAAIKQLKQANYRITATAIYTEFQGYL AIAAGADYLAPYYNRMENLTIDSQKVIEHLAAEIKRTNAKSKILAASFKNVAQINQACQM GAQAVTIAPELVTQGLAMPAIQKAVTDFQEDWVAVFGVETVNELA >gi|307679019|gb|GL456778.1| GENE 15 16458 - 16814 503 118 aa, chain - ## HITS:1 COG:PM1969 KEGG:ns NR:ns ## COG: PM1969 COG3731 # Protein_GI_number: 15603834 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIA # Organism: Pasteurella multocida # 2 117 3 118 123 66 29.0 9e-12 MSVFTTKVQSIGPEAELFKEEKMVILFGKDAPDALADYCYNIEVQPVTEAITDKQTLVID EQTYQITAVGEVVLTNLDTLGHITIKFDGATTPELPGTLYVEEKAIPEITVGTTITIL >gi|307679019|gb|GL456778.1| GENE 16 16838 - 17833 1107 331 aa, chain - ## HITS:1 COG:PM1970 KEGG:ns NR:ns ## COG: PM1970 COG3732 # Protein_GI_number: 15603835 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIBC # Organism: Pasteurella multocida # 5 330 4 328 329 344 57.0 2e-94 MTYNSIKVVKGNGGYGGPLVITPTEEKHKFIYITGGGEKPAIVDKIVELTGMEAVNGFKT SIPDDEIALAIIDCGGTLRCGIYPKKGIPTINVVPTGKSGPLAQYINETIYVSAVGPKQI TLTSEEAAADTEKPTSKKTEFKYDTSKKITEQKAEQQSFVAKIGMGAGKVVATFNQSARE GVQTMINTVIPFMAFVSLLIGVIQGSGIGEFFANIMAPLAGNIVGLTIIGFICSLPFLSP LLGPGAVISQVIGTLIGVEIGKGNIPPQLALPALFAINTQNACDFIPVGLGLEEAEAETV EVGVPSVLYSRFLNGAPRVLVAWLASFGLYS >gi|307679019|gb|GL456778.1| GENE 17 17850 - 18404 710 184 aa, chain - ## HITS:1 COG:PM1971 KEGG:ns NR:ns ## COG: PM1971 COG3730 # Protein_GI_number: 15603836 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIC # Organism: Pasteurella multocida # 1 182 2 183 184 206 54.0 2e-53 MSYITKFAEGFMHLFQTGAETFISWMTGIVPVVLMLMVAMNTLIAFLGEERVTKVAKLSA KNPVTRYLVLPFLSAFMLGNPMSFTMARFLPEYYKPSYYAAQAQFCHTSNGVFPHINPGE LFVWLGIAQGIDTLGLNSMDLAIRYMFVGILMNFIGGWVTDFTTAYVCKQQGITLSKTVE IAVD >gi|307679019|gb|GL456778.1| GENE 18 18404 - 18889 523 161 aa, chain - ## HITS:1 COG:no KEGG:EF3308 NR:ns ## KEGG: EF3308 # Name: srlR # Def: transcriptional regulator SrlR # Organism: E.faecalis # Pathway: not_defined # 1 161 1 161 161 302 100.0 4e-81 MSFIYVFGALFLTAYFVQIAMGMKQIKHFNQNYQELRQLGKVAIGRRAGKLKAGTIILFA VDSQGKILAARKMQGVTVLAKFHPLPQYVNEDIHYMDHYHPLVQKENKLTQQAMENAREI YLRVELGNYQETQPLTPLNGAKIQWQLWKNKVQTKLKGSVE >gi|307679019|gb|GL456778.1| GENE 19 18886 - 20748 1739 620 aa, chain - ## HITS:1 COG:BS_licR_1 KEGG:ns NR:ns ## COG: BS_licR_1 COG3711 # Protein_GI_number: 16080911 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus subtilis # 28 456 28 481 499 95 20.0 4e-19 MTLVNRWYQVIKLLVDHKGMSLQELQEKLAASPQTVRKNIDTLNDELIGIAQIIQKENLF QLEINNFEGFEEVLSGRLKRESDFNSSSKRVSYIIKRLIEEDQFISTYDLSEELAVSRGT VNKDIKRMKELIAPWQVAVVGTPNRGIHLEGKEFDLRLLHVNYVQEYFEEQFLHETTKQM IQKIIKETRLAKQDSFLLRRVVSIVLQRVLAGKLITELPLEYVDYVRHNEQIEELMYHLE ITYNVTLSQWERSFISFPFNINTNHIRNSLLADEGLLADYFQKMMKKIHHSVVVEFDEDF LFSEMKDHLRNVMNRLVFHVECHDLFYGEIERQYPLAYELAKIGLQELGRLLNRCVPTVE FGYLALYFELALRGNYEAGAKKEIAVICSTGHGTALIIQRQLEKVLGPDVQIAHFSEEEA ERRELNQYFAIFTTIPLKNIRPQTPMIHLTNLFNDTWLRNEWQRAKEIRSVESQNIHMTY QLLENTQGYRANIQKMVADLEAEKLVDPQFIERIFTREDQQTTIFESGIAFPHTINQALP TIILSIGVFEESLVTPEGKVDVILLLGIPEELTVTVEAELLQLYDRLFTIAGDERLRNEL RKQRDVLAVKEWMQRKGIII >gi|307679019|gb|GL456778.1| GENE 20 20764 - 21564 1117 266 aa, chain - ## HITS:1 COG:Z5618 KEGG:ns NR:ns ## COG: Z5618 COG1028 # Protein_GI_number: 15804613 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Escherichia coli O157:H7 EDL933 # 1 266 1 268 268 323 61.0 3e-88 MTDWLGIKGKVVIVTGGSSGIGRSIVESLLAQEVYVANFDISASETQHEHLLFVKVDVTS RAEVEAGVAQVVEKFGTVDGLVNNAGINIPRLLVDKNHPHGPYELSDEVFDKIVAINQKG LYLMSQAVGRILVQKQAGVIINMSSEAGLEGSEGQSAYAATKAAVSSYTRSWAKELGKSN VRVVGIAPGIMEETGLRTLAYEEALAYTRNISVEQLRAGYSKTSTIPLGRSGKLHEVADL VCYYLSDRSSYITGITTNVAGGKTRG >gi|307679019|gb|GL456778.1| GENE 21 22406 - 25555 2948 1049 aa, chain - ## HITS:1 COG:SPy1904 KEGG:ns NR:ns ## COG: SPy1904 COG0610 # Protein_GI_number: 15675717 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Streptococcus pyogenes M1 GAS # 6 1045 6 990 992 546 34.0 1e-155 MKISHREEAEVEEQLICVLGEGHNQWTYRPDLKSEEDLWSNLRQKIISNNQAELNDSPLT DKEFETIKTELLLRTKTPFDAAKWLKGENGIARITIEREDPQLGSVSLILYSNQDIGGGI STYEVVHQIAKRGSNIEARDRRFDVTLLINGLPIVQIELKQVTAKNGFYQAFNQIKKYAE EGMFRNNIFSTLQLFVVSNEQTTRYFANALPKDLHPKFLFSWRTKDNEKVENLYEFCKQV LNIPDAHRLIADYTIVSEDQDNKTLMVLHPYQVHAIQALFIAANKHQSGYVWHATGSGKT LTSFVSTKLLARKSGIDRTIMLVDRKDLDNQTTTEFTKFASEFNTGISSGNAKANSLIVG TGSAKELSETLLADANANVVIITTRQKLDAALKYAKKQEEKKGTNRFQKLMGQHIVFVVD ECHRALSAENMEEIKKMFPKSTWFGFTGTPIFPENRKQAKGQLARTTHDQYGEVLHTYTI KNALEDGSVLGFQVEHENTVEPTSLENKIYRKLKEVETYAEYSSEQINRMIDQMEPVKKE SYLDPTVFEAEEHIQKVIHKMFRPDNAYTKFDFRNGRPTKSAILTTSSIDMAKKYYRAIK EMMKEPDWLTKEFPNQPIREGRTMEDPDFPRIAITYSLEENSRDSSVQQEEMQKIIEEYN QYYDTAWSLADIERYNGDINNRLARKRAEFKQFGKQIDLVIVVDRLLTGFDAPTIQTLFV DRNLEYAGLIQAFSRTNRTYPEKTKGLIVTFRKPATMEKNVEDATKLYSEAKEESGLIYP SYQESKKRFKQAYGKLKEVSSMESIDEHTPLEIRIEYVKAFQELNRAYESLVTYDDYNDD MVQSSTLNNQIQLLEEQIGVYETVKGSLMEEELEKEGEDFSTIEFYSENTTKLYDIDSTY IDQLLGTYAANSSDAREEIEKALAKLNKTEGVKEVYRQILNAFDVGTLDSNEDIFVIKRR YFTQASDDLIHVFSNEWFVSEKELHASNLQYLPGEDPIPNMKAIINSKDYEGYKAKHPEA KPFKYPQEMKRAWRKMLDDELIPLENELR >gi|307679019|gb|GL456778.1| GENE 22 25569 - 26732 924 387 aa, chain - ## HITS:1 COG:L0310 KEGG:ns NR:ns ## COG: L0310 COG0732 # Protein_GI_number: 15672634 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Lactococcus lactis # 7 387 8 407 407 214 37.0 2e-55 MSNDTQPEIRFPGFTEDWEQRKLGEVVESVGTGRSTFTNGIVQTSETPYAVLGSTSVISY DSMFDHSGDFILTARVGANAGNLYKYFGEVKISDNTVYIQADNLDFIYYLLTKYDLKRLS FGTGQPLVKASEVKNLKLNFPQKNEEQQKIGTFFKNLDDTITLHQRKLDLLKETKKGFLQ KMFPKNGAKVPEIRFPGFTEDWEERKLGEIVRISSGFTGDSSLNIGQYELTRIETIATGQ VNPNKVGYSNTEPDKKYLLDKGDILFSNINSLSHIGKIALFDLDMKLYHGINLLRLQPMN VNSQFLYQSFQLNNHLEWAKSHANQAVSQASINQTELSKQVFLVPSQQEQQKIGTFFKQL DDTIALHQRKLDLLKETKKGFLQKMFV >gi|307679019|gb|GL456778.1| GENE 23 26722 - 28317 1679 531 aa, chain - ## HITS:1 COG:SPy1906 KEGG:ns NR:ns ## COG: SPy1906 COG0286 # Protein_GI_number: 15675719 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Streptococcus pyogenes M1 GAS # 5 529 8 526 526 540 53.0 1e-153 MGAELNQKLYSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTV SKQTMLYRELLSDEESKEDLIATIVDILGYAISPEYLFNVLADQAKQAIFQLNDLNKAFV QLSSTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVDVLGHDGDVIGDAYEF LISQFASEAGKKAGEFYTPHMVSDMMAQIVTLDQKERPFFSVFDPTMGSGSLMLNVRNYL THPDNVKYHGQELNTTTYNLAKMNLILHGVDAEEMNIRNGDTLNKDWPTDEPYTFDAVVM NPPYSANWSADTTFLDDSRFNRYGKLAPKSKADFAFLLHGFYHLKETGTMAIVLPHGVLF RGAAEGVIRQKLLEDGSIYAVIGMPANLFFGTSIPTTVIVLKKNRQTRDVLFIDASREFV KGKNQNKLSEENIQKILETYAERKDVEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPI DMVHVGNDIKKIRQEQQVLEKELLEAISSLQTTPENEMWLQGALEVFKHEQ >gi|307679019|gb|GL456778.1| GENE 24 28812 - 29669 485 285 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315158692|gb|EFU02709.1| ## NR: gi|315158692|gb|EFU02709.1| hypothetical protein HMPREF9508_01488 [Enterococcus faecalis TX0312] # 1 285 1 285 285 470 100.0 1e-131 MKFNLLALLTVVTLVFVGCTKAPDSLKNSSNSAEVNVSTSTSEAVQCSQETTSLPEELLG DWQINNKDAGIEISDSKAVFRIGRSQVESKDYYVDVNNKMLLHVYFSFEYDGVKYSEVSI ERTGYSEFISKSVGILTMHTKDGQYISLGVKKVSGENNETEAVTEQTMDERIDSSESNET EVDTGKTIDERIDSFIETYTAIPPTWKLVNEDKGITINTDTEISTDAQSLSDLLANLTGI SNAVTEQVGKNVPLRLLENGKKDYSVVFKNGQVTDYNEVFKKVIE >gi|307679019|gb|GL456778.1| GENE 25 29659 - 29796 105 45 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAHNERFKQEIIQELEKGVQHQKLISKTAQKFDISLAKEVKLHEV >gi|307679019|gb|GL456778.1| GENE 26 30283 - 30609 213 108 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315158694|gb|EFU02711.1| ## NR: gi|315158694|gb|EFU02711.1| conserved domain protein [Enterococcus faecalis TX0312] # 1 108 8 115 115 194 99.0 1e-48 MNKVNMNKKFVIIGIVVLAIIGIIFSRMTGSSGLEKSSVPLVTQILQEQYNLNRTCDDVT ITHDNGDNTYRAKATLDNGSAININIEYYPKKDRIYVEIPYTEVLMLN >gi|307679019|gb|GL456778.1| GENE 27 30646 - 31011 422 121 aa, chain - ## HITS:1 COG:no KEGG:Bcell_3752 NR:ns ## KEGG: Bcell_3752 # Name: not_defined # Def: hypothetical protein # Organism: B.cellulosilyticus # Pathway: not_defined # 1 121 1 128 129 70 29.0 2e-11 MYCRKCGKEITNESKYCQFCGALQETDETTGTDTVKKSTEQTINEMKEQIVHGQETGKLY LIIGWISMVVSLAFIPVVFGAVAVIMGYLYREKDEQMGTILMIAGVAGAIFGVLLGMSMS Y >gi|307679019|gb|GL456778.1| GENE 28 31048 - 31263 204 71 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|314938405|ref|ZP_07845696.1| ## NR: gi|314938405|ref|ZP_07845696.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] helix-turn-helix protein [Enterococcus faecium TX0133C] helix-turn-helix protein [Enterococcus faecium TX0133A] helix-turn-helix protein [Enterococcus faecium TX0133B] helix-turn-helix protein [Enterococcus faecium TX0133a01] helix-turn-helix protein [Enterococcus faecium TX0133a01] helix-turn-helix protein [Enterococcus faecium TX0133B] helix-turn-helix protein [Enterococcus faecium TX0133A] helix-turn-helix protein [Enterococcus faecium TX0133C] helix-turn-helix protein [Enterococcus faecium TX0133a04] # 1 71 25 95 95 124 98.0 2e-27 MKKVSNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKMLSEILSVPINE LFSDVFNKVNS >gi|307679019|gb|GL456778.1| GENE 29 31392 - 31727 306 111 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307295149|ref|ZP_07574989.1| ## NR: gi|307295149|ref|ZP_07574989.1| helix-turn-helix protein [Enterococcus faecalis TX0411] helix-turn-helix protein [Enterococcus faecalis TX0411] # 1 111 18 128 128 194 100.0 3e-48 MKQKQYAKVIREKRKALGWTQKELAKKIFSTQQAVARWENSVTEPNLDSLTALSRALGTP VSHFLDNVDIDYEEEFLALYRSLSTEDAIRTIDYMKLLKRQENERNQLLKD >gi|307679019|gb|GL456778.1| GENE 30 31803 - 33800 719 665 aa, chain - ## HITS:1 COG:no KEGG:Dred_0377 NR:ns ## KEGG: Dred_0377 # Name: not_defined # Def: hypothetical protein # Organism: D.reducens # Pathway: not_defined # 6 450 1 492 679 92 23.0 7e-17 METSMINIPIYVDKEKLLEKPVTKKEKTDVRDRCLDNYREVTRDEFVEILNSSQSFIPSK TKNKGNDKESFVETRVIILDVDNTVKDEKGKVVDLSKDDSRYLSIEKVLSINLVHNSAFA IQKSIRYSENLEKYKIVFLLKEAITDYGKMVAVYEYLKKNIPGCDDNVNASNRMFFGGYK SDAVIIINEDNMLDITELPIDFTMTCSKNCQSDSGREYELVNETYFVKLIKNDDKEEMKQ WFKDCLFDSSDMSFNEIYERLLTIDMNKLLKSSKNLRCLFHNDHNPSASIFTSKTGHSIF YCHSSNCDISENFIGVVMLILKKDSRVETFNWLLENLDLYPTHFRKLKEESKVLFDTLES MKDKLFRTIRNYLEEMRRVYDVLLSDVNFFDDSKESVTCILSGEQLAKKMSSYYGKTYDI DKCNKLLSLMTFIGLIKKLDDEDVPLKMLEYLNRLKEEKALGNFNHKRSNVYRLDVFNTT SVIQKLNEDILPLLEKFHFTYQYFSYEWVKICFNEKEAKRVFPQNSRSELSKEKQLILDE AHEVLQGLSWQGTYLMTEKELINTVCERLRNVRDNSVKNALIENRGYFVKQGFTLERASK DIKKLYNVKASSSFLVYLAKGAGIDEVIKELILSGVELVPIYQFTSVTRDDGRRVRNRRD PIILN >gi|307679019|gb|GL456778.1| GENE 31 33898 - 34173 365 91 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|307277177|ref|ZP_07558281.1| ## NR: gi|307277177|ref|ZP_07558281.1| DNA binding domain, excisionase family [Enterococcus faecalis TX2134] DNA binding domain, excisionase family [Enterococcus faecalis TX2134] # 1 91 17 107 107 145 100.0 7e-34 MSLQIIDSIVSIQVEQQVKEIITVLKPMLEDIISGVTLEYMDYQQASEYLGVSVGTIRKY VSQYGLPVIKIDTVIRFKKSDIDSFMERYKG >gi|307679019|gb|GL456778.1| GENE 32 34405 - 35121 426 238 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315158700|gb|EFU02717.1| ## NR: gi|315158700|gb|EFU02717.1| hypothetical protein HMPREF9508_01496 [Enterococcus faecalis TX0312] hypothetical protein HMPREF9513_00060 [Enterococcus faecalis TX0645] # 1 238 1 238 238 436 100.0 1e-121 MIKRPPINYLERKKILGTKIKAIRKSKKLTQPAFGLMINNGQLIDKKTIYEWEKGTYLPI PERLSRIADLGNMSIEELVCGNVEEYILGIILYRDSIVLDGITFPDKNLFQHLRQQFPPV HSNLDTWLDRYSKLEPEMQEFIANKTCNKVKNEKISLFNILKIEELFINAIIEEFDNNIL LLTSSIEEQLEEMIDEGIHSQVEDMNYPEEAVNEIIDNINKLKQTISSIGKKYTKKTY >gi|307679019|gb|GL456778.1| GENE 33 35263 - 36426 518 387 aa, chain + ## HITS:1 COG:L55605 KEGG:ns NR:ns ## COG: L55605 COG0582 # Protein_GI_number: 15673415 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Lactococcus lactis # 4 386 3 358 359 180 32.0 4e-45 MATIQQYKKSDGTTAWLYKVYMGKDPVTGKEKRTTRRGFKTKKEASLDLARFQLEIESTG ISQHSIKTFSELYDLWMNQHVKNIRNTTEQRIKNHFTNQILPSFGKMRLEVITPAICQKI LTEWSTKYQSYQKIKSYTSQVFNYGILIGVIKTNPMERTITPKSNHNFNEIEEEFYTKEE LRQFFDCLQELKDDRALAFFRLAAYTGARKGEILGLTWKDIDFDKKTVQFNKTLVELSDG SLCVNPTKTESSKRTITIDDGTLTILKKWKRTVIKKNLSRGIRIDNMDDVPVISTIKANK KRDFLYKGYPNHVMSKIARKFPDMKIIKVHGFRKTHATLLFEAGAQVKDVQDRLGHSSSK TTMDIYIQVSKNRQEETVELFDSYMNA >gi|307679019|gb|GL456778.1| GENE 34 36503 - 38401 2567 632 aa, chain - ## HITS:1 COG:lin2942 KEGG:ns NR:ns ## COG: lin2942 COG0445 # Protein_GI_number: 16802001 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: NAD/FAD-utilizing enzyme apparently involved in cell division # Organism: Listeria innocua # 1 630 1 627 629 910 74.0 0 MNQYQAESYDVIVVGAGHAGSEAALAAARMGVKTLLLTINLDMVAFMPCNPSVGGPAKGV VVREIDALGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYATEMKHTIEKEENL TLRQGIVEELIVEDGVCRGVVTSTGAAYRSQAVVITAGTALRGEIIIGELKYSSGPNNSQ PSVGLANHLKELGLEIDRFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSYSTPDSAYNQ NQEPCWLTYTNETTHEIIQKNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFL EPEGLNTEEVYVQGLSTSLPEDVQTEMLHSIEGLEKVEMMRTGYAIEYDVVVPHQLRPTL ETKVIENLYTAGQTNGTSGYEEAAGQGLMAGINAALKIQGKEPLVLKRSDGYIGVMIDDL VTKGTNEPYRLLTSRAEYRLILRHDNADLRLTEMGHEIGLVKEEQYAAYLVKKAAVEAEI ARLGKHRIKPTKEVQAFLETKGAAGLKDGILARDFLKRPEISYQEVAQFIPAPEEALDPK VIEQVEIQIKYEGYIKKAMEKVEKLKRMEAKRIPENIDYQAINGLATEAKQKLQKIQPET IAQASRISGVNPADISILMVYIEQGKIAKVQG >gi|307679019|gb|GL456778.1| GENE 35 38421 - 39818 1775 465 aa, chain - ## HITS:1 COG:lin2943 KEGG:ns NR:ns ## COG: lin2943 COG0486 # Protein_GI_number: 16802002 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Listeria innocua # 6 465 1 457 457 606 71.0 1e-173 MQSATMEFDTIAAISTPPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKVPTHTIHYGH IVDPQNDQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLREGARMAEPGE FTKRAFLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILNTLAQV EVNIDYPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGRPNVGK SSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERS RKALADSDLILLVLNQSEELTEEDRQLLEATKGLKRVILLNKMDLPTKLDPNELQELVPA EEILSVSVLSNTGLDQLEAKIADLFFGGQTGEKDATYISNTRHIALLDQAALSLQEVING IEAGMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK >gi|307679019|gb|GL456778.1| GENE 36 40051 - 41928 2215 625 aa, chain - ## HITS:1 COG:BH2080 KEGG:ns NR:ns ## COG: BH2080 COG1404 # Protein_GI_number: 15614643 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus halodurans # 74 402 741 1047 1052 88 27.0 3e-17 MEQLLVQRQRMIKETLLWTFQPGAANPGDTLTVVGKDGDGNESQPTEVTVPEDATVAAPT VTTVTGTTATGYQVTGTAEPNVTIEIHNEAGLVIATGTTDGAGAFTITLPTGTATAKEAL TAIAKDAAGKESNPTAFKTPADPDAPVTTPTVDKITGSTTKGYQVVGAAEVGTTVEVRDA DGTVLGMATTGTDGKYTVTLEPGKASANETITVVAKNATGKESQPATATTPADLATPTID SITGNSGKGYEITGTAEPKTTIDVRDADGTIIAATTANETGQYTVTLPAGVVTPGETITI ISKDGAGNESQPATAVIPADVVLAAPTITKVEGNKANGYTVTGTADPNVTVQFYNSSEQL LASGNTTTGGTFSVHIAAGLATEKETLTALTTDTQGNVSPKTTFMTPADITGEPEIKIAA PTVSSVLGTSKAGYLIKGTAEPNRIIQISNRLLRSVIAVGATDAEGNFAIQLTAGQATAQ QSLLATATDGAGHYSTATTFMTPADPTNPGGGNGNTGGNNGNTGNNGATGGNNGNGSNTG SNPNGGSGLGTTGSGLGSLGNGLGTNGSGYHPKLSTISYGTGNHGKTGFLPSTGEKESSA VTTSLFGAFVALLASMGIIKRKRKN >gi|307679019|gb|GL456778.1| GENE 37 41852 - 44686 3139 944 aa, chain - ## HITS:1 COG:BH2080 KEGG:ns NR:ns ## COG: BH2080 COG1404 # Protein_GI_number: 15614643 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus halodurans # 552 878 741 1047 1052 111 31.0 6e-24 MKKKIVEDFNRKSQHKKWTKRKMLNLAISSGLLFTSLAIPVSIAVTSGTISASAAVLDIE LLSNVTSNNDSGTSTSNRWTAANQNQPVNFTVSGGALADASAVFSGQKQAVLVVPPELRG NVAAAGSAAINTNVTIDLSKVTFLTAVLNAANDLTNVITQITSGALGNLTGVDIDLTEVN RQLELVNNIENLGAASFTAPETLAADGSYISAPISDGLGLVLAQNVSNILQDLNAAVQAL EAKGTSIPSNLVATAINAALLPVKGTVNVAVSGALPLLAVGGSGVNELVDASLLGATTVT LPTTVSTPQNLSNNLDARFVGTVVQTDLLDVNLLATADGVSNIYFAAGTTSEVTAPTVTG VTGNSTAGYEVKGTADANATVEIRNAGGTVIGTGTADGTGAFTVTIPAGEAGANETLTAV AKNASGTESTPTTFQTPADEATVTAPTITGVTGNSTAGYEIKGTADANATVEIRNAGGAV IGTGTADGTGAFTVTIPAGEAGANETLTAVAKNASGTESTPTTFQTPADPNTPVATPIVE TVTGSTTKGYEVKGTAEVGTTIEVRDAAGTVLGTATTGTDGKYTVTLDSGTATANQTLSV VAKNASGTESQPATATTPADVTAPTVDNITGNSGSGYEITGTADPNTTIEVRDPSGAVIG TGTSDANGDFTVTLPTGTTNPGDTLTVIGKDNAGNESQPTEVLVPADATVTAPTVTGVTG NSVAGYQVTGTADPNATIEIRDADGNVIATGTADGTGSFAVNLPAGTANANETLTALAKD PAGNTSTPTTFQTPADEVVAPPSVDKVTGNTTQGYQVTGTAELGTTIEVRATDGTVLGTA TTGPTGQYTVTLASGKATAKQTVNVVAKNDTGLESQPTTAMTPADVTTPTIGDITGDSTT GYEITGTADPNTTIEVRNPDGTIIGTTTTDDQGNFTVDLPAGSR >gi|307679019|gb|GL456778.1| GENE 38 45526 - 45840 383 104 aa, chain + ## HITS:1 COG:no KEGG:SPH_1425 NR:ns ## KEGG: SPH_1425 # Name: not_defined # Def: conjugative transposon protein # Organism: S.pneumoniae_Hungary19A_6 # Pathway: not_defined # 1 104 1 104 104 203 100.0 1e-51 MELKFVIPNMEKTFGNLEFAGEDKVVQRRINGRLTVLSRSYNLYSDVQRADDIVVVLPAE AGEKHFGFEERVKLVNPRITAEGYKIGTRGFTNYLLHADDMIKE >gi|307679019|gb|GL456778.1| GENE 39 45859 - 46242 594 127 aa, chain + ## HITS:1 COG:no KEGG:SPSINT_2122 NR:ns ## KEGG: SPSINT_2122 # Name: not_defined # Def: hypothetical protein # Organism: S.pseudintermedius # Pathway: not_defined # 1 127 2 128 128 227 100.0 1e-58 MRLANGIVLDKDTTFGELKFSALRREVRIQNEDGSVSDEIKERTYDLKSKGQGRMIQVSI PASVPLKEFDYNARVELINPIADTVATATYQGADVDWYIKADDIVLTKDSSSFKAQPQAK KEPTQDK >gi|307679019|gb|GL456778.1| GENE 40 46271 - 47656 610 461 aa, chain + ## HITS:1 COG:BS_ydcQ KEGG:ns NR:ns ## COG: BS_ydcQ COG1674 # Protein_GI_number: 16077553 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Bacillus subtilis # 2 455 11 461 480 439 50.0 1e-123 MKQRGKRIRPSGKDLVFHFTIASLLPVFLLVVGLFHVKTIQQINWQDFNLSQADKIDIPY LIISFSVAILICLLVAFVFKRVRYDTVKQLYHRQKLAKMILENKWYESEQVKTEGFFKDS AGRTKEKITYFPKMYYRLKNGLIQIRVEITLGKYQDQLLHLEKKLESGLYCELTDKELKD SYVEYTLLYDTIASRISIDEVEAKDGKLRLMKNVWWEYDKLPHMLIAGGTGGGKTYFILT LIEALLHTDSKLYILDPKNADLADLGSVMANVYYRKEDLLSCIETFYEEMMKRSEEMKQM KNYKTGKNYAYLGLPAHFLIFDEYVAFMEMLGTKENTAVMNKLKQIVMLGRQAGFFLILA CQRPDAKYLGDGIRDQFNFRVALGRMSEMGYGMMFGSDVQKDFFLKRIKGRGYVDVGTSV ISEFYTPLVPKGYDFLEEIKKLSNSRQSTQATCEAEVAGVD >gi|307679019|gb|GL456778.1| GENE 41 47834 - 49039 482 401 aa, chain + ## HITS:1 COG:BS_ydcR KEGG:ns NR:ns ## COG: BS_ydcR COG2946 # Protein_GI_number: 16077554 # Func_class: L Replication, recombination and repair # Function: Putative phage replication protein RstA # Organism: Bacillus subtilis # 68 386 25 340 352 241 41.0 1e-63 MEGFLLNEQTWLQHLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWE ALERFNPDAPLEMLFDYVRIRFPTTDVQQVVENILQLKLSYFLHEDYGFYSYSEHYALGD IFVLCSHELDKGVLVELKGRGCRQFESYLLAQQRSWYEFFMDVLVAGGVMKRLDLAINDK TGILNIPVLTEKCQQEECISVFRSFKSYRSGELVRKEEKECMGNTLYIGSLQSEVYFCIY EKDYEQYKKNDIPIEDAEVKNRFEIRLKNERAYYAVRDLLVYDNPEHTAFKIINRYIRFV DKDDSKPRSDWKLNEEWAWFIGNNRERLKLTTKPEPYSFQRTLNWLSHQVAPTLKVAIKL DEINQTQVVKDILDHAKLTDRHKQILKQQSVKEQDVITTKK >gi|307679019|gb|GL456778.1| GENE 42 49082 - 49303 369 73 aa, chain + ## HITS:1 COG:no KEGG:SPG_1238 NR:ns ## KEGG: SPG_1238 # Name: not_defined # Def: Tn5251 hypothetical protein # Organism: S.pneumoniae_G54 # Pathway: not_defined # 1 73 1 73 73 103 100.0 2e-21 MNFGQNLYNWFLSNAQSLVLLAIVVIGLYLGFKREFSKLIGFLIIAIIAVGLVFNAAGVK DILLELFNRIIGA >gi|307679019|gb|GL456778.1| GENE 43 49420 - 49917 675 165 aa, chain + ## HITS:1 COG:no KEGG:SPG_1237 NR:ns ## KEGG: SPG_1237 # Name: not_defined # Def: Tn5251 hypothetical protein # Organism: S.pneumoniae_G54 # Pathway: not_defined # 1 165 1 165 165 295 100.0 5e-79 MDDMQVYIANLGKYNEGELVGAWFTFPIDFEEVKEKIGLNDEYEEYAIHDYELPFTVDEY TSIGELNRLWEMVSELPEELQSELSALLTHFSSIEELSEHQEDIIIHSDCDDMYDVARYY IEETGALGEVPASLQNYIDYQAYGRDLDLSGTFISTNHGIFEIVY >gi|307679019|gb|GL456778.1| GENE 44 50006 - 50398 138 130 aa, chain + ## HITS:1 COG:no KEGG:SPH_1415 NR:ns ## KEGG: SPH_1415 # Name: not_defined # Def: conjugative transposon membrane protein # Organism: S.pneumoniae_Hungary19A_6 # Pathway: not_defined # 1 130 39 168 168 240 100.0 1e-62 MKKIRSYTSIWSVEKVLYSINDFRLPFPITFTQMTWFVVSLFAVMILGNLPPLSMIEGAF LKYFGIPVAFTWFMSTKTFDGKKPYGFLKSVIAYALRPKLTYAGKKVTLGRNQPQEAITA VRSEFYGISN >gi|307679019|gb|GL456778.1| GENE 45 50382 - 52829 1469 815 aa, chain + ## HITS:1 COG:no KEGG:SPCG_0166 NR:ns ## KEGG: SPCG_0166 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_CGSP14 # Pathway: not_defined # 1 815 18 832 832 1585 100.0 0 MAYPIKYIENNLVWNKDGECYAYYELVPYNYSFLSPEQKIQVHDSFRQLIAQNRDGKIHA LQISTESSIRSAQERSKNEVTGKLKAVAYDKIDQQTDALISMIGENQVNYRFFIGFKLLL NDQEFSMKSLTVEAKNALSDFVYDVNHKLMGDFVSMSNDEILRFQKMEKLLENKISRRFK IRRLDKDDFGYLIEHLYGQTGTAYEEYEYHLSKKKLDNETLIKYYDLIKPTRCLVEEKQR YLKIQQEDETVYVAYFTINSIVGELDFPSSEIFYYQQQQFTFPIDTSMNVEIVANRKALS TVRNKKKELKDLDNHAWQSDNETSSNVAEALESVNELETNLDQSKESMYKLSYVVRVSAN DLDELKRRCNEVKDFYDDLSVKLVRPFGDMLGLHEEFLPASKRYMNDYIQYVTSDFLAGL GFGATQMLGENEGIYVGYSLDTGRNVYLKPALASQGVKGSVTNALASAFVGSLGGGKSFA NNLIVYYAVLYGAQAVIVDPKAERGRWKETLPEISHEINIVTLTSDEKNKGLLDPYVIMK NPKDSESLAIDILTFLTGISSRDGERFPILRKAIRAVTNSEVRGLMKVIEELRVENTPLS TSIADHIESFTDYDFAHLLFSNGYVEQSISLEKQLNIIQVADLVLPDKETSFEEYTTMEL LSVAMLIVISTFALDFIHTDRSIFKIVDLDEAWSFLQVAQGKTLSMKLVRAGRAMNAGVY FVTQNTDDLLDEKLKNNLGLKFAFRSTDLNEIKKTLAFFGVDPEDENNQKRLRDLENGQC LISDLYGRVGVIQFHPVFEELLHAFDTRPPVRKEV >gi|307679019|gb|GL456778.1| GENE 46 52832 - 55009 980 725 aa, chain + ## HITS:1 COG:no KEGG:SPSINT_2115 NR:ns ## KEGG: SPSINT_2115 # Name: not_defined # Def: hypothetical membrane protein # Organism: S.pseudintermedius # Pathway: not_defined # 1 725 1 725 725 1335 100.0 0 MKPSIVNRIKSNWTLKRLGKVAMTVAFTLVIAIFLLAMLGTVVQAAGLVDDTVNVANEYS RYPLENYQLDFYVDNSWGWLPWNWSDGIGKQVMYGLYAITNFIWTISLYVSNATGYLVQE AYSLDFISATADSIGKNMQTLAGVSANGFSTEGFYVGFLLLLILVLGVYVAYTGLIKRET TKAIHAIMNFVLVFILSASFIAYAPDYIKKINDFSSDISNASLSLGTKIVMPHSDSQGKD SVDLIRDSLFSIQVQQPWLLLQYNSSDIESIGIDRVESLLSTSPDSNNGEDREKIVAEEI EDRSNTNLTITKTINRLGTVFFLFVFNIGISIFVFLLTGIMIFSQVLFIIYAMFLPVSFI LSMIPSFDGMSKRAITKLFNTILTRAGITLIITTAFSISTMLYTLSAGYPFFLIAFLQIV TFAGIYFKLGDLMSMFSLQSNDSQSVGSRVMRKPRMLMHAHMHRLQRKLGRSMTTLGAGS AIVTGKKGQSGSGSSARTQADHSRPDGKEKSTLGKRIGQTIGTVADTKDRMVDTASGLKE QVKDLPTNARYAVYQGKSKVKENVRDLTSSISQTKADRASGRKEQQEQRRKTIAKRRSEM EQVKQKKQPASSVHERPTTRQEQYHDEQTSKQSNIQTSYKESQQAKQERPAVKSDFSSPK VERQGNTVQEKTVQKPATSTTTADRTSQRPITKERPSTVQRVPLQNTRSRPPIKTATIKK VGKKP >gi|307679019|gb|GL456778.1| GENE 47 55006 - 56007 542 333 aa, chain + ## HITS:1 COG:BS_yddH_2 KEGG:ns NR:ns ## COG: BS_yddH_2 COG0791 # Protein_GI_number: 16077564 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Bacillus subtilis # 210 332 2 124 124 144 59.0 2e-34 MKLKTLVIGGSGLFLMVFSLLLFVAILFSDEQDSGISNIHYGGVNVSAEVLAHKPMVEKY AKEYGVEEYVNILLAIIQVESGGTAEDVMQSSESLGLPPNSLSTEESIKQGVKYFSELLA SSERLSVDLESVIQSYNYGGGFLGYVANRGNKYTFELAQSFSKEYSGGEKVSYPNPIAIP INGGWRYNYGNMFYVQLVTQYLVTTEFDDDTVQAIMDEALKYEGWRYVYGGASPTTSFDC SGLTQWTYGKAGINLPRTAQQQYDVTQHIPLSEAQAGDLVFFHSTYNAGSYITHVGIYLG NNRMFHAGDPIGYADLTSPYWQQHLVGAGRIKQ >gi|307679019|gb|GL456778.1| GENE 48 56025 - 56936 708 303 aa, chain + ## HITS:1 COG:no KEGG:SPSINT_2113 NR:ns ## KEGG: SPSINT_2113 # Name: not_defined # Def: hypothetical protein # Organism: S.pseudintermedius # Pathway: not_defined # 1 303 8 310 310 555 100.0 1e-157 MKFRKNQNKEKQIPKEKKPRVYKVNPHKKVVIALWVLLGLSFSFAIFKHFTAIDTHTIHE TTIIEKEYVDTHHVENFVENFAKVYYSWEQSDKSIDNRMESLKGYLTDELQALNVDTVRK DIPVSSSVRGFQIWTVEPTGDNEFNVTYSVDQLITEGENTKTVHSAYIVSVYVDGSGNMV LVKNPTITNIPKKSSYKPKAIESEGTVDSITTNEINEFLTTFFKLYPTATASELSYYVND GILKPIGKEYIFQELVNPIHNRKDNQVTVSLTVEYIDQQTKATQVSQFDLVLEKNGSNWK IVK >gi|307679019|gb|GL456778.1| GENE 49 57313 - 59232 1026 639 aa, chain + ## HITS:1 COG:CAC1448 KEGG:ns NR:ns ## COG: CAC1448 COG0480 # Protein_GI_number: 15894727 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Clostridium acetobutylicum # 2 638 3 647 652 427 37.0 1e-119 MKIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGI TSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG IPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIE GNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYS STHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEKEKIKVTEMYTSING ELCKIDRAYSGEIVILQNEFLKLNSVLGDTKLLPQRKKIENPHPLLQTTVEPSKPEQREM LLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKYHVEIELKEPTVIY MERPLKNAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEG IRYGCEQGLYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYL SFKIYAPQEYLSRAYNDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNGR SVCLTELKGYHVTTGEPVCQPRRPNSRIDKVRYMFNKIT >gi|307679019|gb|GL456778.1| GENE 50 59578 - 59931 420 117 aa, chain - ## HITS:1 COG:no KEGG:SPH_1408 NR:ns ## KEGG: SPH_1408 # Name: not_defined # Def: transcriptional regulator, putative # Organism: S.pneumoniae_Hungary19A_6 # Pathway: not_defined # 1 117 1 117 117 216 100.0 3e-55 MRKKEDKYDFRAFGLAIKEARLKRGLTREQVGALIEIDPRYLTNIENKGQHPSIQVLYDL VSLLHVSVDEFFLPANNLVKSTRRLQIEKYMDSFTDKELSLMESLASGINEARNIED >gi|307679019|gb|GL456778.1| GENE 51 60436 - 60858 241 140 aa, chain + ## HITS:1 COG:no KEGG:SAG0919 NR:ns ## KEGG: SAG0919 # Name: not_defined # Def: Tn916 hypothetical protein # Organism: S.agalactiae # Pathway: not_defined # 1 140 18 157 157 251 100.0 8e-66 MKPSSFQTTIENQFDYICKRAMEDERKNYMLYLSRIAKREVSFSDVGDYLVSQFATTDNY STDFQIFTLNGLSVGVENDLLSEALRELPDKKREILLLFYFMDMSDSEIADLLKLNRSTV YRHRTSGLALIKKFMEEFEE >gi|307679019|gb|GL456778.1| GENE 52 60855 - 61085 146 76 aa, chain + ## HITS:1 COG:no KEGG:SPH_1405 NR:ns ## KEGG: SPH_1405 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_Hungary19A_6 # Pathway: not_defined # 1 76 1 76 76 142 100.0 5e-33 MKTQYPMIPFPLIVKATDGDTEAINQILHHYRGYITKRSLRLMKDEYGNQSMVVDEVLRG RMETRLITKILSFEIK >gi|307679019|gb|GL456778.1| GENE 53 61546 - 61749 276 67 aa, chain + ## HITS:1 COG:no KEGG:SPH_1403 NR:ns ## KEGG: SPH_1403 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_Hungary19A_6 # Pathway: not_defined # 1 67 1 67 67 111 100.0 7e-24 MKQTDIPIWERYTLTIEEASKYFRIGENKLRRLAEENKNANWLIMNGNRIQIKRKQFEKI IDTLDAI >gi|307679019|gb|GL456778.1| GENE 54 61831 - 63048 865 405 aa, chain + ## HITS:1 COG:SA1835 KEGG:ns NR:ns ## COG: SA1835 COG0582 # Protein_GI_number: 15927603 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Staphylococcus aureus N315 # 181 383 167 367 390 75 27.0 1e-13 MSEKRRDNKGRILKTGESQRKDGRYLYKYIDSFGEPQFVYSWKLVATDRVPAGKRDCISL REKIAELQKDIHDGIDVVGKKMTLCQLYAKQNAQRPKVRKNTETGRKYLMDILKKDKLGV RSIDSIKPSDAKEWAIRMSENGYAYQTINNYKRSLKASFYIAIQDDCVRKNPFDFQLKAV LDDDTVPKTVLTEEQEEKLLAFAKADKTYSKNYDEILILLKTGLRISEFGGLTLPDLDFE NRLVNIDHQLLRDTEIGYYIETPKTKSGERQVPMVEEAYQAFKRVLANRKNDKRVEIDGY SDFLFLNRKNYPKVASDYNGMMKGLVKKYNKYNEDKLPHITPHSLRHTFCTNYANAGMNP KALQYIMGHANIAMTLNYYAHATFDSAMAEMKRLNKEKQQERLVA >gi|307679019|gb|GL456778.1| GENE 55 63355 - 63528 59 57 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|307268895|ref|ZP_07550259.1| ## NR: gi|307268895|ref|ZP_07550259.1| hypothetical protein HMPREF9498_01025 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9498_01025 [Enterococcus faecalis TX4248] # 1 57 1 57 57 92 98.0 1e-17 MADPLIKKIVTTLIWSVILTLYAYGKVSREFKKAIDKYHETQYILLRNHSYQSIQIR >gi|307679019|gb|GL456778.1| GENE 56 63513 - 64382 1049 289 aa, chain - ## HITS:1 COG:VC0801 KEGG:ns NR:ns ## COG: VC0801 COG1767 # Protein_GI_number: 15640819 # Func_class: H Coenzyme transport and metabolism # Function: Triphosphoribosyl-dephospho-CoA synthetase # Organism: Vibrio cholerae # 16 284 39 308 313 155 37.0 9e-38 MTKQARSKLAQQAQLALLYEVTCLNKPGLVDPVDAGAHQDMDVFTFLESSVVLTPYFETF VQAGTELRHLPIEATFRAIRQVGLEAERAMFEATEGINTHKGAIFSLGIFLAICGRLMIW ETPCTLQLFQQTLQTMTQDLLADFENLATNELEKLTWGERLFVQHGLTGIRGEAQQGYPA VFEQGVPYYQKHQGTQQQKLIDTLLYLSLYVEDTNLIKRSQNVQIFEIYQPLIQEYFALG GTQTLRGTLCLERLNHLFKEKNWSIGGSADALILVVFLDKLMKLNWLTP >gi|307679019|gb|GL456778.1| GENE 57 64389 - 65579 1279 396 aa, chain - ## HITS:1 COG:L3227 KEGG:ns NR:ns ## COG: L3227 COG0281 # Protein_GI_number: 15673168 # Func_class: C Energy production and conversion # Function: Malic enzyme # Organism: Lactococcus lactis # 8 386 4 380 380 381 54.0 1e-105 MKGSDNVLEEILAIHQKNIGVLSLEATEAVLNHHDLAKMYTPGVAELSLMIAQNHELARE WTISGKLIAVITDGSAVLGLGNMGTQAGLPIVEGKALLYKNLAGVDAIPLALEQKSVDEM VQTIENLQNSFAGIHLEDISAPKCFEIEEKLQQRLNIPVYHDDQEGTAIVVLAGLINAAK IKGKPLNELRVVINGVGASGVATAKLCIQAGITHLTLVDRQGVLREEDPTLNPYQRALLR QVIKPSVENKDLATAVVNQDVFLGLSEADVLTPALIKSMNQDPIIFALANPKPEIEPDLA QANGVRLLATGSSKYPNQVNNILAFPGLFKGLLAAKGRKVDVGLQMTVARSLAAMISEPT AEKFIPNVFDGGVVDTVFNAVLDYIKQEKTTAEEGT >gi|307679019|gb|GL456778.1| GENE 58 65679 - 67076 1756 465 aa, chain - ## HITS:1 COG:SPy1191 KEGG:ns NR:ns ## COG: SPy1191 COG5016 # Protein_GI_number: 15675160 # Func_class: C Energy production and conversion # Function: Pyruvate/oxaloacetate carboxyltransferase # Organism: Streptococcus pyogenes M1 GAS # 4 465 8 469 469 745 78.0 0 MSKKIRFTETVLRDGQQSLIATRMPTSDMLPIIKTMDEAGFHALEMWGGATFDSCVRYLN EDPWERLRQIRKEVKNTKLQMLLRGQNLLGYRHYADDVVRAFVEKSVENGIDIIRIFDAL NDVRNLQTAIQTTKEAGGHCQAAISYTTSEIHTIDYFVKLAKELSQTGADSICIKDMAGV LTPQTGFELVSKMKDAIDLPLEVHTHATSGISEMTYLKVAEAGADIIDTAISSFAGGTSQ PATESVAIALEDLGFETGLNMEKVTEIADYFNPIRDRFRSEGILNPKVKDTEPKTLIYQV PGGMLSNLLSQLTEQGLQDKYEEVLAEVPKVRADLGYPPLVTPLSQMVGTQALMNVISGE RYSLIPNEIKDYVRGEYGKSPAPIAEEIKQKIIGDEEVITCRPADLLKPELHSLEKEIQQ YAKSEEDVLLYAMFPQQGKDFLGRREDPFYDVPLQKVTVKLDLPE >gi|307679019|gb|GL456778.1| GENE 59 67069 - 67617 447 182 aa, chain - ## HITS:1 COG:SPy1190 KEGG:ns NR:ns ## COG: SPy1190 COG3697 # Protein_GI_number: 15675159 # Func_class: H Coenzyme transport and metabolism; I Lipid transport and metabolism # Function: Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) # Organism: Streptococcus pyogenes M1 GAS # 6 173 7 175 192 140 47.0 9e-34 MWYAMFNGEKVTLLEMLDAREQRAATQKELLETAPEASLLSATMNIPGEVKNSPTLTAVF LEVIDEVEQQLLDQVPIVNFYRNEKTGPEYYLAVSLAPQELKQRMVKIEETHPYGRLVDL DVLWGNEELKSLHRGDLGLPPRRCFICQEVAKVCGRNRRHSLEAMQEKITEIILTRKEQP SE >gi|307679019|gb|GL456778.1| GENE 60 67598 - 69130 2129 510 aa, chain - ## HITS:1 COG:SPy1189 KEGG:ns NR:ns ## COG: SPy1189 COG3051 # Protein_GI_number: 15675158 # Func_class: C Energy production and conversion # Function: Citrate lyase, alpha subunit # Organism: Streptococcus pyogenes M1 GAS # 1 510 1 510 510 842 84.0 0 MVVNKVGKDIPQSYAEQYGIYEGELAHIDAYQEASRAIKPVKPRETKLLGSIREAIEKTG LKDGMTISFHHHFREGDYVMNLVLAEIAAMGLKNISIAPSSIANVHEPLIEHIKNGVVTN ITSSGLRDKVGAAISAGIMENPVVIRSHGGRARAVAAGDIHIDVAFLGAPSSDAYGNANG TKGKATCGSLGYAMVDAKYADQVVIITDTLVPYPNTPISIPQTDVDYVVEIDAIGDPDGI AKGATRFTKNPKELLIAEYAAKIITHSPYYKEGFSFQTGTGGSSLAVTRFMREQMLKDGI KASFALGGITNAMVELLEEGLVEKIIDVQDFDHPSAISLGENANHYEIDANMYASPLSKG AVINQLDTAILSALEVDTDFNVNVITGSDGVIRGASGGHSDTSMACKMSLVIAPLVRGRI PTIVEQVNTVVTPGTSVDVVVTEVGIAINPKRTDLIDCFKTLDVPQFTLEELKDKAYNIV GTPEPIKYGDKVVALIEYRDGSLIDVVRNV >gi|307679019|gb|GL456778.1| GENE 61 69133 - 70020 1113 295 aa, chain - ## HITS:1 COG:SPy1188 KEGG:ns NR:ns ## COG: SPy1188 COG2301 # Protein_GI_number: 15675157 # Func_class: G Carbohydrate transport and metabolism # Function: Citrate lyase beta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 295 1 295 295 436 83.0 1e-122 MERLRRTMMFVPGANAAMLRDAPLYGADSIMFDLEDAVSLKEKDSARVLVHSALKTFDYG NIEIVVRINALDAGGAEDIEAMVLAGVDVIRLPKTETAQDIIDVEAVITEVEQQNDIPVG TTKMMAAIESAEGVLNAPAIAKSSTRLIGIALGAEDYVTNMKTRRHPDGQELFFARSMIL HAARAAGIAAIDTVYSDVDNTEGFEAEVRLIKQLGFDGKSVINPRQIPLVNTIYAPTEKE IQNAKEVIWGIREAEAKGSGVISVNGKMVDKPIVERAERVIALALAAKLITEEEI >gi|307679019|gb|GL456778.1| GENE 62 70008 - 70316 386 102 aa, chain - ## HITS:1 COG:SPy1186 KEGG:ns NR:ns ## COG: SPy1186 COG3052 # Protein_GI_number: 15675156 # Func_class: C Energy production and conversion # Function: Citrate lyase, gamma subunit # Organism: Streptococcus pyogenes M1 GAS # 1 102 1 102 102 109 59.0 1e-24 MKIIKNATAGTVESSDIMITVQPIESTENTIELESSVEKQFGNQIRQVITTTLEHLDVQG VAVKAIDKGALDCTIKARMITVLHRGAEKETYDWKELDSWNV >gi|307679019|gb|GL456778.1| GENE 63 70322 - 71332 956 336 aa, chain - ## HITS:1 COG:FN0319 KEGG:ns NR:ns ## COG: FN0319 COG3053 # Protein_GI_number: 19703664 # Func_class: C Energy production and conversion # Function: Citrate lyase synthetase # Organism: Fusobacterium nucleatum # 15 329 10 325 345 233 41.0 5e-61 MSSVYTMKRIWLQKDKKAYQAWRELMEKAELQTTEALDYTVGIYDDTALIASGSLSGKTI KCVAVCKKYQSENLLTQLVVHLLEKLREENQLHSFLYTKPKNEQIFQSLGFQKVVANQEV LFMEQGKPDFADYLGYLTQHKKAGPASSIVMNANPFTKGHQYLVEKAAKESPHVYVFVLS EDKSLFSKEARFAMVQKGVAHLPNVTVLSTEDYLVSSATFPTYFLKEKAPLEVAAIQATL DATLFKERIAPILEIQQRYVGEEPYSEVTAVYNQAMQQVFGQTITLTIVPRLASDGELIS ATKVRKAMAEGDKETLKKFLPATSYQYLVEHKKLMR >gi|307679019|gb|GL456778.1| GENE 64 71347 - 71481 239 44 aa, chain - ## HITS:1 COG:no KEGG:EF3323 NR:ns ## KEGG: EF3323 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 44 1 44 44 66 100.0 4e-10 MSVNMEDLKIAFELLGFGWGGVFVVLFIIYLASKLLTKLFPIKK >gi|307679019|gb|GL456778.1| GENE 65 71503 - 72618 1533 371 aa, chain - ## HITS:1 COG:SPy1184 KEGG:ns NR:ns ## COG: SPy1184 COG1883 # Protein_GI_number: 15675155 # Func_class: C Energy production and conversion # Function: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 371 1 373 373 463 77.0 1e-130 METLIQGVIGMGQEPGRIVMMLIGGLLMYLGIKKEYEPTLLVPMGLGTILVNFPNSGVLS AGGEPGPFNVLFDFGIKTELFPLLLFIGIGAMIDFGPLLQNPFMLMFGAAAQFGIFFTVI MAVLLGFDLNDAASIGIIGAADGPTSIFVANTLHSKYMGAIMVAAYSYMALVPIIQPVAI KAVTTKAERRIRMTYRAGEVSQTAKILFPVVITIVAGLIAPVSLPLVGFLMFGNLLRECG VLDRLSITAQNELVNIISILLGLSISVSMNYAEFLKVDTLMVIGLGLVAFIMDSVGGVLF AKFLNLFRKEKINPMIGAAGISAFPMSSRVIQKMATDEDPQNFILMHAAGANVSGQIASV IAGGLLLAFLT >gi|307679019|gb|GL456778.1| GENE 66 72648 - 73049 571 133 aa, chain - ## HITS:1 COG:SPy1183 KEGG:ns NR:ns ## COG: SPy1183 COG0511 # Protein_GI_number: 15675154 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxyl carrier protein # Organism: Streptococcus pyogenes M1 GAS # 1 132 2 131 132 119 68.0 1e-27 MLRKFKISIDGKEYLVEMEEIGGVPQPAPVAPQPTAPVATTETPAPAVEEAPAPAAQPAA PAGADAMPAPMPGTVLKVLVNVGDTVSENQPLLILEAMKMENEIVAGKAGTVTGIHVTQG QIVNPGEPLITIN >gi|307679019|gb|GL456778.1| GENE 67 73033 - 73395 409 120 aa, chain - ## HITS:1 COG:no KEGG:EF3326 NR:ns ## KEGG: EF3326 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 120 1 120 120 177 100.0 9e-44 MGLFKSLFKKEQHTQDTEINESVIQREADNLEKRWIDIPAYIPAEPKEYQLVSIVATAIA AGEFPESRFVIKKIAKRNPEAKEVAIIAASIAAELSEESQLVVKRISKQNLEEDHYVTQI >gi|307679019|gb|GL456778.1| GENE 68 73800 - 75197 1723 465 aa, chain + ## HITS:1 COG:SPy1180 KEGG:ns NR:ns ## COG: SPy1180 COG2851 # Protein_GI_number: 15675152 # Func_class: C Energy production and conversion # Function: H+/citrate symporter # Organism: Streptococcus pyogenes M1 GAS # 1 464 2 468 468 588 74.0 1e-168 MLLTILAYGMIIIFMYVIMKKKLSPFTSLVIIPLIFTLIAIATGVASPPPGADGVVPEVN IGNFVLDGISTTSKTGIMLLFAILYFSIMLDAGLFDPITKKMIYFAKGDPMKVLMATAVV AAAVSLNGDGTTTTLICCSAFIPIYKKLNMKLMNLGVLVILQNTIMNLLPWGGPTARAMA VLEVDADILSYLAPGMILSVLYVIFFVAYRMGKKERARLGVTTLTDKELEEMTIVNDPEL LEIRRPKNFAFNGILTIVLIGWLVLSSFVGQLGLPSWIEMPPLLLFLVGTCIALMINYPK LKDQSSRISANAGDAVQVVILVFAAGVFMGLFQGSGMANALANSFVNIIPKQLAGAWGLV IAFISAPGTFFISNDGFYFGVLPVLAEAGRSYGFDNMSMALASLMGQAFHLLSPLVAFIY LLLRLTGLDMGQWQKESAKYALGIFVIFVVTIVALGHMPLFIPQN >gi|307679019|gb|GL456778.1| GENE 69 75331 - 76026 956 231 aa, chain + ## HITS:1 COG:SPy1179 KEGG:ns NR:ns ## COG: SPy1179 COG1802 # Protein_GI_number: 15675151 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 229 1 229 231 258 61.0 5e-69 MNPTVEAVKRNLDLTSSKPLKICTYEAFKKTIILGDIPAGERINEKEFSEQLNISRTPIR FALQELVKEQLVEHIPMVGIVVKGISMKDAYEIYDIRKSLDTLATIKAMELMTPEDFDEL EALLLEGEQYNKNNQVDDLLQNFSDFNSFIYTKSQMLRLKKIVTDLHAYLIYFRDIAIRA SERRSIALEEHWLIFRGMKTKNIDQITLLTHEHLNRSLQFILKEMERRQIE >gi|307679019|gb|GL456778.1| GENE 70 76070 - 76792 668 240 aa, chain - ## HITS:1 COG:BH0820 KEGG:ns NR:ns ## COG: BH0820 COG0745 # Protein_GI_number: 15613383 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus halodurans # 1 229 1 228 234 131 33.0 1e-30 MRTEKILVVDDDAAVRRLIWKALQSTGILIYQSESIEKTKDIVSRVTFDLFILDDNLEHD SDGYYLVQMIREKYPLVPIIFFSSKKEEEDIIAALEMGVDSYITKPFSLNVFKAQVIASL NRARMIRKQLNVYKKEELQVGDFRFDYGRYQLFKKDLPISLSSKEVQLIQFFLENPEQVF SKEQIYSSVWGTGDVDANTIMVFINRLRSKLEENPKEPCYLRTVWGIGYTFTPDGCVQKK >gi|307679019|gb|GL456778.1| GENE 71 76970 - 77746 1032 258 aa, chain - ## HITS:1 COG:lin2985 KEGG:ns NR:ns ## COG: lin2985 COG1847 # Protein_GI_number: 16802043 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein # Organism: Listeria innocua # 5 256 7 206 206 153 37.0 3e-37 MPIYEGNTIEEATQKGLQALGLTKEDVTIDVLDEGKKGFLGLGKKLAQISMEPTISEQVT EAVEETVEDIVVADEAKAVEEAVEELTEAIPSLSEESTHSLENLEDEAAITELAMYLTNI SNELNAPAMVRIARENGNIIFHLETEKQGILIGKHGKVLNALQYLAQVFIHRIASNKLSI VVNVGNYREKRHEILERLAKRTAEKAKRTGRPVFLEPMPAFERKQIHHTLSKDEQIKTHS EGDEPYRYLVVEPVKKYF >gi|307679019|gb|GL456778.1| GENE 72 77761 - 78588 862 275 aa, chain - ## HITS:1 COG:L131778 KEGG:ns NR:ns ## COG: L131778 COG0706 # Protein_GI_number: 15672111 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Lactococcus lactis # 23 266 21 267 269 270 57.0 2e-72 MKKYKRLLLMAGLVTLVFVLSACGTAPVSESSTGIWDRYIVYYFAQAIKFLSLGGSVGIG IILFTLVIRIILLPLMHFQTKSMRKTQELQPQLKALQQKYSSKDPETQRLFREEQQRLYA ENNVNPYIGCLPLLVQLPIMMALYQAISRVPELKEGTFLWLSLDKPDPYLILPILAAVFT FASTYLSSMSQLETNASLKIMNYVMPAMIFFMGISLASSLSLYWVVSNAFQTGQTLLLNN PFKIRKEREEAARQAKARERALERAKSPKKKGKKK >gi|307679019|gb|GL456778.1| GENE 73 78588 - 78950 327 120 aa, chain - ## HITS:1 COG:SPy0246 KEGG:ns NR:ns ## COG: SPy0246 COG0594 # Protein_GI_number: 15674428 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNase P protein component # Organism: Streptococcus pyogenes M1 GAS # 3 114 1 110 119 111 58.0 3e-25 MPMKKSYRVKKEKEFQQVFNKKQSCANRRFVVYVLEKPQQAHFRVGISVGKKIGNAVTRN AVKRKIRASLFQLKDRISPEIDFIVIARPGLEKLSSEEVKANLTHVLNLAKILDVREGIE >gi|307679019|gb|GL456778.1| GENE 74 79148 - 79282 223 44 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29377774|ref|NP_816928.1| 50S ribosomal protein L34 [Enterococcus faecalis V583] # 1 44 1 44 44 90 100 3e-17 MKRTYQPNKRKRQKVHGFRKRMSTKNGRRVLASRRRKGRKVISA >gi|307679019|gb|GL456778.1| GENE 75 79805 - 81148 1435 447 aa, chain + ## HITS:1 COG:BH0001 KEGG:ns NR:ns ## COG: BH0001 COG0593 # Protein_GI_number: 15612564 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Bacillus halodurans # 1 447 1 449 449 474 53.0 1e-133 MPDVESFWHSLEEAYQAILSAPSFDAWIKTTRPLKLDNNQLWLEVPSAVHRDYWEKNLSA KIVETGFKLTGAEVMPHFVVADEKDAALAQELEEPAEEEVVFSEQSKKAMLNPKYTFDTF VIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMLVNQPDAKVKYV SSETFTNEFINSIQTKTSEQFRKEYRNVDLLLVDDIQFLAEKEATLEEFFHTFNDLYNEN KQIVLTSDRPPNDIPKLPERLVSRFAWGLSVDITPPDLETRIAILRKKADAERLEIPDDT LSYIAGQIDSNIRELEGALVRVQAFATINGEDITTSLAADALKSLKSVGSKNQLSILQIQ EEVSKYYHVPLKDLKGKKRVKTIVVPRQISMYLAREMTDNSLPKIGAEFGGKDHTTVIHA HEKIQQLLEKDPAIQKEVSEIKNLLNS >gi|307679019|gb|GL456778.1| GENE 76 81350 - 82480 1474 376 aa, chain + ## HITS:1 COG:BS_dnaN KEGG:ns NR:ns ## COG: BS_dnaN COG0592 # Protein_GI_number: 16077070 # Func_class: L Replication, recombination and repair # Function: DNA polymerase sliding clamp subunit (PCNA homolog) # Organism: Bacillus subtilis # 1 375 1 377 378 343 51.0 3e-94 MKLTVKRSVFLQELQTVQRAISSKTTIPILTGVKIVLSEDGLSLTGSNADISIESFLSKD DEKAQMTIERTGSIVLQSRFFGEIIRKLPEDMFTMEVLDNNQVAITSGKADFTVNGLDAD NYPHLPVIDTQNQMKLPVHLLTKIISETGFAVSMHESRPILTGVHFILENQKLLAVATDS HRLSQRVIPTEQAVEDFNIVIPGKSLTELSRSLTNEEEMVEISIMENQVLFKTETMYFYS RLLEGNYPDTNRLIPTSHNTQIEFYVPELLSAIERASLLSHEGRNNIVRLSISPDSVVLY GNSPEIGKVEEALNYENVSGEALDISFNPDYMKDALRAFGDMNITVKFLSPIRPFTLEPT ETELDFIQLITPVRTN >gi|307679019|gb|GL456778.1| GENE 77 83061 - 83306 338 81 aa, chain + ## HITS:1 COG:BS_yaaA KEGG:ns NR:ns ## COG: BS_yaaA COG2501 # Protein_GI_number: 16077071 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 70 1 70 71 70 52.0 5e-13 MKKTFVLATEYITLGQFLKEINVIGSGGQAKWYLADNSVFVDGELENRRGRKLYAGMMIE IPEEGTFFMVKNGNESDDAAE >gi|307679019|gb|GL456778.1| GENE 78 83293 - 84420 1132 375 aa, chain + ## HITS:1 COG:lin0005 KEGG:ns NR:ns ## COG: lin0005 COG1195 # Protein_GI_number: 16799084 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair ATPase (RecF pathway) # Organism: Listeria innocua # 1 372 1 370 370 399 55.0 1e-111 MRLNELTLQHYRNYETVSLDFPKTLNLFLGENAQGKTNLLESIYVLAMTRSHRTSNEKEL IGWEQAAAKISGVVEKKTGTVPLEILISNKGRKTKVNHIEQKRLSAYIGQLNVILFAPED LSLVKGSPQVRRKFIDMELGQVSPIYLYDLVQYQSVLKQRNQYLKQLAEKKQTDTVYLDI LTEQLAEFGGKVLYARLGFLKKLEHWANLLHQKISHGRETLTIDYASSIPIDNTDLSLEA LQNQLLQQLMNNRKRELFKANTFLGPHRDDLLFIVNGQNVQTYGSQGQQRTTALSIKLAE IDLMHSETGEYPVLLLDDVMSELDNERQIHLLETIEGKVQTFLTTTSLDHIKDKLTVEPD IFYVQQGKIERNSAT >gi|307679019|gb|GL456778.1| GENE 79 84417 - 86366 2507 649 aa, chain + ## HITS:1 COG:L0283 KEGG:ns NR:ns ## COG: L0283 COG0187 # Protein_GI_number: 15672887 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Lactococcus lactis # 1 643 1 646 651 961 77.0 0 MTEEEKNMRERAQEYDASQIQVLEGLEAVRKRPGMYIGSTSGEGLHHLVWEIVDNSIDEA LAGFAKSIQVIIEPDDSITVIDDGRGIPVGIQAKTGRPAVETVFTVLHAGGKFGGGGYKV SGGLHGVGSSVVNALSTSLDVRVYKDGKVYYQEYRRGAVVDDLKVIEETDRHGTTVHFIP DPEIFTETTVYDFDKLATRVRELAFLNRGLHISIEDRREGQEDKKEYHYEGGIKSYVEHL NANKDVIFPEPIFIEGEQQDITVEVSMQYTDGYHSNILSFANNIHTYEGGTHESGFKTSL TRVINDYARKQKLMKENDEKLTGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSEVRTVT DRLFSEYFTKFLMENPTVGKQIVEKGMLASKARLAAKRAREVTRRKGALEISNLPGKLAD CSSKDPEKCELFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILANEEIRS LFTAMGTGFGEDFDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRFMRPIVEAGYVYIA QPPLYGVKQGKNITYVQPGKHAEEELAKVLEELPASPKPSVQRYKGLGEMDDHQLWETTM DPEKRLMARVSVDDAIEADQIFEMLMGDRVEPRRAFIEENAHYVKNLDI >gi|307679019|gb|GL456778.1| GENE 80 86422 - 88923 3225 833 aa, chain + ## HITS:1 COG:SPy1152 KEGG:ns NR:ns ## COG: SPy1152 COG0188 # Protein_GI_number: 15675129 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Streptococcus pyogenes M1 GAS # 8 832 5 827 828 1119 70.0 0 MSEEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTP DKPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAA MRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMA TNIPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGS ITVRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREG MRIVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKE VITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQ AQAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFG DARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQGMGVH DDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQA IISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVTTNGNQ KMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYVVGAAILDENKEVLVITENGY GKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGDEDILLITNKGVIIRFNVDSV SQTGRATLGVRLMRMEDGAKVVTMAVVEPEEVEEEIVEVVETTENETTSETEE >gi|307679019|gb|GL456778.1| GENE 81 89098 - 89400 510 100 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374668|ref|NP_813820.1| 30S ribosomal protein S6 [Enterococcus faecalis V583] # 1 100 1 100 100 201 100 2e-50 MSQDTKYEIMYIIRPNIDEEAKTALVERFDTILKDNGAEVIESKDWEKRRLAYEMNGFRE GIYHIVNVTSPSTAGAINEFDRLAKINDDIIRHMIVKVEA >gi|307679019|gb|GL456778.1| GENE 82 89445 - 90011 620 188 aa, chain + ## HITS:1 COG:L0302 KEGG:ns NR:ns ## COG: L0302 COG0629 # Protein_GI_number: 15674172 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Lactococcus lactis # 1 188 1 166 166 181 59.0 5e-46 MINNVVLVGRLTKDPDLRYTASGSAVATFTLAVNRNFTNQNGDREADFINCVIWRKPAET MANYARKGTLLGVVGRIQTRNYDNQQGQRVYVTEVVCENFQLLESRSASEQRGTGGGSFN NNENGYQSQNRSFGNNNAGSGFNNNNNSFNPSSSQSQNNNGMPDFDKDSDPFGGSGSSID ISDDDLPF >gi|307679019|gb|GL456778.1| GENE 83 90037 - 90276 397 79 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374670|ref|NP_813822.1| 30S ribosomal protein S18 [Enterococcus faecalis V583] # 1 79 1 79 79 157 100 2e-37 MAQQRRGGRKRRKVDYIAANHIEYIDYKDTELLKRFISERGKILPRRVTGTGAKNQRKLT IAIKRARIMGLLPFVSDEQ >gi|307679019|gb|GL456778.1| GENE 84 90481 - 92457 785 658 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|162447066|ref|YP_001620198.1| bipartite protein: signaling protein and ribosomal protein L9 [Acholeplasma laidlawii PG-8A] # 9 647 6 659 818 306 30 1e-106 MQKKRIQKNGFLIVVGLLLVEFLLYFLLTNKWLLLAVIIALDIFLLVVIRLLIRDVEITN VEKIQEASSIAEQSLDYVVNEVPVGIITYNGETRAVEWLNPYAASIFNKDNQLTLTASQV TSYLELAERNQDIFTIDENTYRFSVNKEQHTITFEDITKESNLYQEKVEMQTAIGIVSVD NYDDVTDTMDEKEISYLNSFITTMVSDWMDQYKVFYKRINAERYFFIAQWEDIQKMMDEK FSILDTIRKESANHEVAITLSMGIAYGGPTLDQTGTTAQTNLDTALVRGGDQVVVKEAKD EAKPLFFGGKTAVTTKRSQVRSRAMSMAIKGIIAESADIYIMGHRYPDMDALGSAFGVAR LASFNNRKAWIVLDENEIIPDVKRVLEAIKEYPELEERIISPKEAMKRKKESSLLVMVDY HKPSLSISQELYERFDKVVIIDHHRRGDEFPAKPLLSYIESSASSASELVTELIEYQSNS ANKLQAFEATMMLAGIVVDTKSFNTRTTARTFDVASYLRTCGADSSLVQYLLSSDLTSYL EMNNLISKSEYVTKDTVVVAGSEDKEYDSVTAAKTADTLLSMAGINAAFVITKRTDQQIG ISARSNGSINVQIIMENLGGGGHFTNAAVQLSNVTVAEVKEQLLDVIRQNINEMYEQE >gi|307679019|gb|GL456778.1| GENE 85 92454 - 92915 759 153 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227518097|ref|ZP_03948146.1| 50S ribosomal protein L9 [Enterococcus faecalis TX0104] # 1 153 1 153 153 296 99 2e-79 MKEMKVIFLQDVKGKGKKGDVKEVPTGYAQNFLIKNGYAKEANKGSMSALAGQKKAQEKH EAEVLAQAKEMQAFLEDEKTVVEIKAKAGEDSRLFGSIPSKQIAEALNKQYNVKLDKRKI ELANPIRSLGYTNVPVKLHHEVTAKIKVHVVAE >gi|307679019|gb|GL456778.1| GENE 86 93188 - 94555 1766 455 aa, chain + ## HITS:1 COG:L0286 KEGG:ns NR:ns ## COG: L0286 COG0305 # Protein_GI_number: 15672728 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Lactococcus lactis # 1 452 1 452 455 535 67.0 1e-152 MNELLQDRVPPQNIEAEQAVLGSIFLDADVLIEAMEYVEPKDFYRRSHQLIFQTMMTLSD RNEAIDVVTIKDRLEQENLLEDVGGLSYLSDLALAVPTAANVIYYAKIVEQKSLLRNLIQ TATEIVTKGFEQGEDVESILDDAERSILEVSEKRNRSGFLSISDVLNTTIANIDQLYQND EEITGLPTGYQALDKMTAGLQAEELIILAARPAVGKTAFALNIAQNVGTKTDKAVAIFSL EMGAESLVNRMLCAEGSIEASHLRTGQLSEEEWQNLIIAMGSLSRANIYIDDTPGIKITE IRAKCRKLAQEKGNLGLILIDYLQLIEGTGKENRQQEVSDISRQLKKLAKELKVPVIALS QLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYDRGEGEDGDHEPPEVDNVV EVIIEKNRSGARGTVELLFIKEYNKFSSLSPRTEF >gi|307679019|gb|GL456778.1| GENE 87 94681 - 96084 1578 467 aa, chain + ## HITS:1 COG:SPy0160 KEGG:ns NR:ns ## COG: SPy0160 COG0104 # Protein_GI_number: 15674367 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate synthase # Organism: Streptococcus pyogenes M1 GAS # 38 467 1 430 430 753 85.0 0 MTETLLIVKEYSIFTLERDWFYWYNDSGQKNYERGVRMSSVVVVGTQWGDEGKGKITDFL SENAEVIARYQGGDNAGHTIKFDGVTYKLHLIPSGIFYKEKISVIGNGVVVNPKSLVKEL AYLKENNVATDNLRISDRAHVILPYHIKLDQLQEDAKGENKIGTTIKGIGPAYMDKAARV GIRIADLLDKEIFAERLQINLEEKNRQFVKMFDSEAIEFDDIFEEYYEYGQQIKQYVTDT SVILNDALDAGKRVLFEGAQGVMLDIDQGTYPFVTSSNPVAGGVTIGSGVGPSKINKVVG VCKAYTSRVGDGPFPTELFDETGETIRRVGKEYGTTTGRPRRVGWFDSVVMRHSKRVSGI TNLSLNSIDVLSGLETVKICTAYELDGELIYHYPASLKELSRCKPVYEELPGWSEDITGC KTLADLPANARNYVHRISELVGVRISTFSVGPDRNQTNVLESVWAQI >gi|307679019|gb|GL456778.1| GENE 88 96209 - 97078 1000 289 aa, chain + ## HITS:1 COG:L123851 KEGG:ns NR:ns ## COG: L123851 COG1307 # Protein_GI_number: 15673853 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 1 289 1 288 289 209 38.0 6e-54 MNYQLVTDSCCDLPYTYLKENQVPFISMNIQIDGKEYRDDLGETFDYQNFLTAIKNGSMP TTSQVNVGRYNEFFRPFVEQGLPVIYLAFSSGLSGSYQSALQSVEMLKEEYDNVEIHIID TKAASLGQGMLVREAIRLQTDGHSLGEVVAYLEEQKMKLHSWVTVDDLKHLERGGRISKT AAALGGLMNIKPIIRVDAAGKLASVGKTRGRNKSLQKIAQETIQGIIEPMKQTLLIAYAG TKDDAEKVKELIEKEIEVNEILIYPLGPTITSHTGIGCIAVFSFGEKRK Prediction of potential genes in microbial genomes Time: Tue Jul 5 18:50:10 2011 Seq name: gi|307679018|gb|GL456779.1| Enterococcus faecalis TX0312 genomic scaffold Scfld60, whole genome shotgun sequence Length of sequence - 205459 bp Number of predicted genes - 207, with homology - 203 Number of transcription units - 95, operones - 51 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 166 - 196 1.1 1 1 Tu 1 3/0.042 - CDS 202 - 1698 2075 ## COG1190 Lysyl-tRNA synthetase (class II) - Prom 1727 - 1786 4.1 - Term 1749 - 1785 4.1 2 2 Op 1 2/0.083 - CDS 1792 - 2805 554 ## PROTEIN SUPPORTED gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase 3 2 Op 2 1/0.167 - CDS 2802 - 3698 1089 ## COG1281 Disulfide bond chaperones of the HSP33 family - Prom 3796 - 3855 5.5 - Term 3792 - 3855 23.2 4 3 Op 1 11/0.000 - CDS 3860 - 6016 1339 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 - Prom 6049 - 6108 2.2 5 3 Op 2 10/0.000 - CDS 6110 - 6655 724 ## COG0634 Hypoxanthine-guanine phosphoribosyltransferase 6 3 Op 3 2/0.083 - CDS 6674 - 8062 1096 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control - Term 8081 - 8134 9.0 7 4 Op 1 . - CDS 8148 - 8627 361 ## PROTEIN SUPPORTED gi|218290661|ref|ZP_03494752.1| RNA binding S1 domain protein 8 4 Op 2 . - CDS 8672 - 9151 404 ## EF0261 hypothetical protein - Prom 9179 - 9238 5.5 - Term 9331 - 9397 10.0 9 5 Op 1 1/0.167 - CDS 9406 - 9669 361 ## COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) 10 5 Op 2 2/0.083 - CDS 9684 - 11273 1745 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 11 5 Op 3 7/0.000 - CDS 11289 - 14828 3719 ## COG1197 Transcription-repair coupling factor (superfamily II helicase) 12 5 Op 4 . - CDS 14848 - 15414 625 ## COG0193 Peptidyl-tRNA hydrolase - Prom 15482 - 15541 8.3 + Prom 15094 - 15153 4.0 13 6 Op 1 . + CDS 15353 - 15532 96 ## + Prom 15630 - 15689 7.5 14 6 Op 2 . + CDS 15750 - 16733 1378 ## COG0039 Malate/lactate dehydrogenases + Term 16796 - 16853 15.3 15 7 Tu 1 . - CDS 16960 - 18450 1723 ## COG1012 NAD-dependent aldehyde dehydrogenases - Prom 18480 - 18539 15.2 - Term 18624 - 18677 13.1 16 8 Tu 1 . - CDS 18726 - 20231 1651 ## COG1705 Muramidase (flagellum-specific) - Prom 20348 - 20407 8.3 - Term 20355 - 20392 -0.7 17 9 Op 1 . - CDS 20465 - 20977 652 ## COG1827 Predicted small molecule binding protein (contains 3H domain) 18 9 Op 2 . - CDS 20988 - 21833 951 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 19 9 Op 3 . - CDS 21838 - 22551 702 ## COG0846 NAD-dependent protein deacetylases, SIR2 family - Prom 22571 - 22630 6.1 + Prom 22641 - 22700 5.7 20 10 Tu 1 . + CDS 22724 - 23020 400 ## EF0248 hypothetical protein + Term 23021 - 23072 10.6 + Prom 23422 - 23481 3.5 21 11 Op 1 16/0.000 + CDS 23579 - 25162 1949 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 22 11 Op 2 . + CDS 25174 - 25914 279 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 + Term 25915 - 25974 15.4 - Term 25901 - 25960 17.4 23 12 Tu 1 . - CDS 25961 - 26530 650 ## COG1611 Predicted Rossmann fold nucleotide-binding protein - Prom 26678 - 26737 6.7 + Prom 26624 - 26683 9.7 24 13 Op 1 . + CDS 26719 - 27210 443 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Prom 27215 - 27274 3.7 25 13 Op 2 . + CDS 27301 - 28656 1702 ## COG1114 Branched-chain amino acid permeases + Term 28669 - 28722 14.4 + Prom 28703 - 28762 3.4 26 14 Tu 1 . + CDS 28789 - 29100 585 ## COG0393 Uncharacterized conserved protein + Term 29110 - 29168 14.2 - Term 29103 - 29147 8.2 27 15 Op 1 8/0.000 - CDS 29151 - 29900 843 ## COG0101 Pseudouridylate synthase 28 15 Op 2 34/0.000 - CDS 29919 - 30713 851 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 29 15 Op 3 15/0.000 - CDS 30713 - 31582 440 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 30 15 Op 4 . - CDS 31558 - 32397 1128 ## COG1122 ABC-type cobalt transport system, ATPase component - Prom 32483 - 32542 7.4 - Term 32545 - 32587 9.1 31 16 Op 1 . - CDS 32599 - 33774 1191 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase 32 16 Op 2 . - CDS 33790 - 34989 1345 ## EF0235 hypothetical protein - Prom 35042 - 35101 7.7 - Term 35177 - 35230 1.0 33 17 Op 1 50/0.000 - CDS 35264 - 35647 618 ## PROTEIN SUPPORTED gi|29374878|ref|NP_814031.1| 50S ribosomal protein L17 34 17 Op 2 32/0.000 - CDS 35721 - 36659 1081 ## COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit 35 17 Op 3 48/0.000 - CDS 36740 - 37129 654 ## PROTEIN SUPPORTED gi|29374876|ref|NP_814029.1| 30S ribosomal protein S11 36 17 Op 4 . - CDS 37157 - 37522 606 ## PROTEIN SUPPORTED gi|29374875|ref|NP_814028.1| 30S ribosomal protein S13 37 17 Op 5 . - CDS 37542 - 37658 210 ## PROTEIN SUPPORTED gi|29374874|ref|NP_814027.1| 50S ribosomal protein L36 38 17 Op 6 6/0.000 - CDS 37691 - 37909 303 ## PROTEIN SUPPORTED gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 - Prom 38037 - 38096 7.0 - Term 37944 - 37977 2.0 39 17 Op 7 28/0.000 - CDS 38120 - 38770 837 ## COG0563 Adenylate kinase and related kinases - Term 38813 - 38849 5.7 40 17 Op 8 53/0.000 - CDS 38857 - 40155 762 ## PROTEIN SUPPORTED gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 41 17 Op 9 48/0.000 - CDS 40156 - 40596 731 ## PROTEIN SUPPORTED gi|29374870|ref|NP_814023.1| 50S ribosomal protein L15 42 17 Op 10 50/0.000 - CDS 40644 - 40823 286 ## PROTEIN SUPPORTED gi|29374869|ref|NP_814022.1| ribosomal protein L30 43 17 Op 11 56/0.000 - CDS 40838 - 41338 817 ## PROTEIN SUPPORTED gi|29374868|ref|NP_814021.1| ribosomal protein S5 44 17 Op 12 46/0.000 - CDS 41359 - 41724 599 ## PROTEIN SUPPORTED gi|227520008|ref|ZP_03950057.1| 50S ribosomal protein L18 - Prom 41761 - 41820 3.5 - Term 41792 - 41833 4.1 45 17 Op 13 55/0.000 - CDS 41876 - 42412 909 ## PROTEIN SUPPORTED gi|227520007|ref|ZP_03950056.1| 50S ribosomal protein L6 46 17 Op 14 50/0.000 - CDS 42444 - 42842 660 ## PROTEIN SUPPORTED gi|29374865|ref|NP_814018.1| 30S ribosomal protein S8 47 17 Op 15 50/0.000 - CDS 42878 - 43063 333 ## PROTEIN SUPPORTED gi|29374864|ref|NP_814017.1| 30S ribosomal protein S14 48 17 Op 16 48/0.000 - CDS 43082 - 43621 896 ## PROTEIN SUPPORTED gi|29374863|ref|NP_814016.1| 50S ribosomal protein L5 49 17 Op 17 57/0.000 - CDS 43647 - 43958 517 ## PROTEIN SUPPORTED gi|29374862|ref|NP_814015.1| 50S ribosomal protein L24 50 17 Op 18 50/0.000 - CDS 43994 - 44362 591 ## PROTEIN SUPPORTED gi|29374861|ref|NP_814014.1| ribosomal protein L14 51 17 Op 19 50/0.000 - CDS 44420 - 44707 476 ## PROTEIN SUPPORTED gi|227520001|ref|ZP_03950050.1| 30S ribosomal protein S17 52 17 Op 20 50/0.000 - CDS 44710 - 44898 296 ## PROTEIN SUPPORTED gi|29374859|ref|NP_814012.1| ribosomal protein L29 53 17 Op 21 50/0.000 - CDS 44888 - 45322 753 ## PROTEIN SUPPORTED gi|29374858|ref|NP_814011.1| 50S ribosomal protein L16 54 17 Op 22 61/0.000 - CDS 45325 - 45981 1112 ## PROTEIN SUPPORTED gi|29374857|ref|NP_814010.1| 30S ribosomal protein S3 55 17 Op 23 59/0.000 - CDS 46048 - 46401 564 ## PROTEIN SUPPORTED gi|227519997|ref|ZP_03950046.1| 50S ribosomal protein L22 56 17 Op 24 60/0.000 - CDS 46417 - 46695 486 ## PROTEIN SUPPORTED gi|29374855|ref|NP_814008.1| 30S ribosomal protein S19 57 17 Op 25 61/0.000 - CDS 46738 - 47568 1431 ## PROTEIN SUPPORTED gi|29374854|ref|NP_814007.1| 50S ribosomal protein L2 58 17 Op 26 61/0.000 - CDS 47608 - 47898 471 ## PROTEIN SUPPORTED gi|29374853|ref|NP_814006.1| ribosomal protein L23 59 17 Op 27 58/0.000 - CDS 47898 - 48521 1033 ## PROTEIN SUPPORTED gi|227519993|ref|ZP_03950042.1| 50S ribosomal protein L4 60 17 Op 28 40/0.000 - CDS 48547 - 49176 1059 ## PROTEIN SUPPORTED gi|29374851|ref|NP_814004.1| 50S ribosomal protein L3 61 17 Op 29 . - CDS 49198 - 49542 576 ## PROTEIN SUPPORTED gi|227519991|ref|ZP_03950040.1| 30S ribosomal protein S10 62 18 Op 1 . - CDS 49652 - 49786 48 ## PROTEIN SUPPORTED gi|227515486|ref|ZP_03945535.1| ribosomal protein S10 - Term 49788 - 49840 10.3 63 18 Op 2 . - CDS 49855 - 51021 1260 ## COG2230 Cyclopropane fatty acid synthase and related methyltransferases - Prom 51171 - 51230 7.0 - Term 51244 - 51278 -0.3 64 19 Tu 1 . - CDS 51293 - 52117 1039 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase - Prom 52180 - 52239 4.2 - Term 52204 - 52246 7.7 65 20 Op 1 30/0.000 - CDS 52299 - 53486 1486 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 - Prom 53567 - 53626 7.2 66 20 Op 2 51/0.000 - CDS 53637 - 55718 2282 ## COG0480 Translation elongation factors (GTPases) - Prom 55741 - 55800 1.9 67 20 Op 3 56/0.000 - CDS 55802 - 56272 806 ## PROTEIN SUPPORTED gi|29374845|ref|NP_813998.1| 30S ribosomal protein S7 68 20 Op 4 . - CDS 56328 - 56741 698 ## PROTEIN SUPPORTED gi|29374844|ref|NP_813997.1| 30S ribosomal protein S12 - Prom 56897 - 56956 5.1 + Prom 57000 - 57059 3.9 69 21 Op 1 . + CDS 57086 - 57766 956 ## COG0120 Ribose 5-phosphate isomerase 70 21 Op 2 . + CDS 57808 - 58383 535 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs + Term 58384 - 58438 12.5 + Prom 58454 - 58513 5.9 71 22 Tu 1 . + CDS 58558 - 59244 895 ## COG0588 Phosphoglycerate mutase 1 + Term 59268 - 59303 1.0 - Term 59255 - 59289 4.0 72 23 Tu 1 . - CDS 59301 - 60488 1393 ## COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family - Prom 60516 - 60575 5.5 73 24 Op 1 20/0.000 - CDS 60617 - 61621 1062 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 74 24 Op 2 35/0.000 - CDS 61618 - 62538 736 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component - Term 62566 - 62594 -0.9 75 24 Op 3 . - CDS 62625 - 63425 259 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 63490 - 63549 8.2 + Prom 63407 - 63466 8.5 76 25 Tu 1 . + CDS 63662 - 64600 1186 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component + Term 64606 - 64646 7.1 - Term 64593 - 64633 7.1 77 26 Op 1 1/0.167 - CDS 64639 - 65346 1018 ## COG0813 Purine-nucleoside phosphorylase 78 26 Op 2 4/0.042 - CDS 65364 - 66182 1288 ## COG0005 Purine nucleoside phosphorylase 79 26 Op 3 . - CDS 66199 - 67365 1407 ## COG1015 Phosphopentomutase - Prom 67519 - 67578 8.9 - Term 67568 - 67601 1.2 80 27 Op 1 . - CDS 67671 - 67937 218 ## gi|255971690|ref|ZP_05422276.1| predicted protein 81 27 Op 2 . - CDS 67942 - 68256 329 ## gi|229546984|ref|ZP_04435709.1| conserved hypothetical protein 82 27 Op 3 . - CDS 68266 - 69507 1408 ## gbs1967 hypothetical protein 83 27 Op 4 . - CDS 69504 - 69830 216 ## SZO_10380 hypothetical protein - Prom 69850 - 69909 7.7 84 28 Op 1 . - CDS 69934 - 70137 233 ## gi|327533983|gb|AEA92817.1| lipase 85 28 Op 2 . - CDS 70137 - 70535 485 ## SZO_10380 hypothetical protein - Prom 70581 - 70640 5.9 - Term 70694 - 70732 6.1 86 29 Op 1 26/0.000 - CDS 70741 - 71694 1305 ## COG1079 Uncharacterized ABC-type transport system, permease component 87 29 Op 2 24/0.000 - CDS 71694 - 72827 1226 ## COG4603 ABC-type uncharacterized transport system, permease component 88 29 Op 3 15/0.000 - CDS 72820 - 74388 2190 ## COG3845 ABC-type uncharacterized transport systems, ATPase components - Prom 74489 - 74548 3.4 - Term 74493 - 74536 6.2 89 29 Op 4 2/0.083 - CDS 74594 - 75679 1567 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein 90 29 Op 5 3/0.042 - CDS 75733 - 76806 1545 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein - Prom 76829 - 76888 3.3 91 30 Op 1 3/0.042 - CDS 76902 - 77297 488 ## COG0295 Cytidine deaminase 92 30 Op 2 7/0.000 - CDS 77335 - 77997 974 ## COG0274 Deoxyribose-phosphate aldolase 93 30 Op 3 1/0.167 - CDS 78025 - 79326 1851 ## COG0213 Thymidine phosphorylase - Prom 79351 - 79410 6.6 94 31 Tu 1 . - CDS 79467 - 80474 993 ## COG1609 Transcriptional regulators - Prom 80552 - 80611 10.4 + Prom 80509 - 80568 8.4 95 32 Tu 1 . + CDS 80634 - 81647 948 ## COG1816 Adenosine deaminase + Term 81652 - 81689 7.1 - Term 81638 - 81675 7.1 96 33 Op 1 . - CDS 81680 - 82288 813 ## COG2813 16S RNA G1207 methylase RsmC 97 33 Op 2 . - CDS 82303 - 82890 737 ## COG2755 Lysophospholipase L1 and related esterases - Prom 82920 - 82979 4.0 + Prom 82927 - 82986 5.6 98 34 Tu 1 . + CDS 83045 - 83968 958 ## COG1072 Panthothenate kinase + Prom 84013 - 84072 5.5 99 35 Tu 1 . + CDS 84280 - 85842 1782 ## COG0519 GMP synthase, PP-ATPase domain/subunit + Term 86026 - 86066 6.6 100 36 Op 1 2/0.083 - CDS 86057 - 86371 178 ## COG3464 Transposase and inactivated derivatives 101 36 Op 2 . - CDS 86414 - 86893 326 ## COG3464 Transposase and inactivated derivatives - Prom 87013 - 87072 7.7 - Term 87137 - 87180 -0.6 102 37 Tu 1 . - CDS 87215 - 89143 716 ## BT_2330 hypothetical protein 103 38 Op 1 . - CDS 89238 - 90086 350 ## BT_2330 hypothetical protein 104 38 Op 2 . - CDS 90074 - 90355 187 ## gi|257421458|ref|ZP_05598448.1| predicted protein - Prom 90419 - 90478 6.3 - Term 90493 - 90538 -0.8 105 39 Tu 1 . - CDS 90761 - 90883 112 ## + Prom 90952 - 91011 7.0 106 40 Tu 1 . + CDS 91041 - 91145 62 ## + Prom 91229 - 91288 4.2 107 41 Tu 1 . + CDS 91446 - 91841 271 ## gi|255971665|ref|ZP_05422251.1| predicted protein - Term 91783 - 91838 1.3 108 42 Tu 1 . - CDS 91845 - 92300 355 ## COG1943 Transposase and inactivated derivatives - Prom 92497 - 92556 13.2 + Prom 92543 - 92602 8.8 109 43 Op 1 1/0.167 + CDS 92802 - 94070 844 ## COG0641 Arylsulfatase regulator (Fe-S oxidoreductase) 110 43 Op 2 . + CDS 94070 - 95704 493 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 111 43 Op 3 . + CDS 95731 - 95823 111 ## + Prom 96609 - 96668 8.9 112 44 Op 1 . + CDS 96815 - 97111 134 ## EF0124 hypothetical protein + Term 97192 - 97244 4.1 + Prom 97170 - 97229 4.6 113 44 Op 2 . + CDS 97262 - 97807 654 ## EF0120 hypothetical protein + Term 97811 - 97864 15.6 - Term 97798 - 97852 17.1 114 45 Op 1 . - CDS 97855 - 98643 910 ## COG0384 Predicted epimerase, PhzC/PhzF homolog 115 45 Op 2 . - CDS 98645 - 99610 939 ## COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog - Prom 99641 - 99700 4.4 + Prom 99617 - 99676 8.1 116 46 Op 1 . + CDS 99708 - 101120 1122 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs 117 46 Op 2 . + CDS 101117 - 101560 459 ## COG4815 Uncharacterized protein conserved in bacteria - Term 101554 - 101589 7.1 118 47 Tu 1 . - CDS 101621 - 102889 1421 ## COG0251 Putative translation initiation inhibitor, yjgF family - Prom 102916 - 102975 7.5 - Term 103097 - 103142 14.6 119 48 Op 1 . - CDS 103174 - 105660 2620 ## COG3525 N-acetyl-beta-hexosaminidase - Prom 105730 - 105789 8.4 120 48 Op 2 . - CDS 105892 - 106908 1006 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases - Prom 106966 - 107025 6.2 + Prom 107001 - 107060 5.0 121 49 Op 1 . + CDS 107088 - 107423 461 ## EF0110 ArsR family transcriptional regulator 122 49 Op 2 . + CDS 107420 - 108100 678 ## COG0693 Putative intracellular protease/amidase + Term 108103 - 108146 11.7 - Term 108086 - 108139 18.1 123 50 Op 1 . - CDS 108191 - 109642 1490 ## COG1288 Predicted membrane protein 124 50 Op 2 . - CDS 109690 - 110379 550 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 125 50 Op 3 8/0.000 - CDS 110407 - 111339 1309 ## COG0549 Carbamate kinase - Prom 111361 - 111420 4.0 - Term 111363 - 111405 9.4 126 51 Op 1 7/0.000 - CDS 111445 - 112464 1466 ## COG0078 Ornithine carbamoyltransferase 127 51 Op 2 1/0.167 - CDS 112494 - 113720 1429 ## PROTEIN SUPPORTED gi|149020061|ref|ZP_01835035.1| 50S ribosomal protein L33 - Prom 113885 - 113944 19.4 - Term 113962 - 114014 20.4 128 52 Tu 1 . - CDS 114017 - 114505 515 ## COG1438 Arginine repressor - Prom 114661 - 114720 5.3 + Prom 114509 - 114568 6.0 129 53 Tu 1 . + CDS 114748 - 115227 407 ## COG1438 Arginine repressor + Term 115298 - 115332 3.1 + Prom 115314 - 115373 8.4 130 54 Tu 1 . + CDS 115394 - 116329 734 ## COG2267 Lysophospholipase - Term 116301 - 116340 8.6 131 55 Op 1 . - CDS 116345 - 117616 1284 ## COG0172 Seryl-tRNA synthetase 132 55 Op 2 9/0.000 - CDS 117643 - 118536 1285 ## COG1760 L-serine deaminase 133 55 Op 3 1/0.167 - CDS 118551 - 119258 890 ## COG1760 L-serine deaminase 134 55 Op 4 . - CDS 119233 - 120333 1424 ## COG1299 Phosphotransferase system, fructose-specific IIC component - Prom 120465 - 120524 7.1 + Prom 120334 - 120393 9.9 135 56 Tu 1 . + CDS 120590 - 121270 672 ## COG2964 Uncharacterized protein conserved in bacteria + Term 121275 - 121327 11.0 - Term 121261 - 121312 18.3 136 57 Op 1 . - CDS 121329 - 122114 760 ## EF0095 putative lipoprotein - Prom 122142 - 122201 5.0 - Term 122207 - 122249 6.4 137 57 Op 2 . - CDS 122270 - 123031 998 ## COG2116 Formate/nitrite family of transporters - Prom 123128 - 123187 6.9 - Term 123137 - 123184 11.1 138 58 Op 1 . - CDS 123208 - 126015 2224 ## EF0093 cell wall surface anchor family protein 139 58 Op 2 . - CDS 126030 - 126269 388 ## EF0092 hypothetical protein - Term 126466 - 126530 20.5 140 59 Op 1 . - CDS 126614 - 128119 1393 ## EF0091 hypothetical protein - Prom 128140 - 128199 4.2 141 59 Op 2 . - CDS 128201 - 129112 1016 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase - Prom 129159 - 129218 8.3 - Term 129320 - 129380 16.6 142 60 Tu 1 . - CDS 129391 - 135489 7154 ## COG4932 Predicted outer membrane protein - Prom 135546 - 135605 3.8 - Term 135730 - 135778 5.1 143 61 Tu 1 . - CDS 135972 - 136127 115 ## gi|256964058|ref|ZP_05568229.1| predicted protein - Prom 136310 - 136369 4.7 144 62 Op 1 . + CDS 136199 - 137686 1161 ## EF0086 hypothetical protein 145 62 Op 2 . + CDS 137680 - 139164 1193 ## EF0085 hypothetical protein + Term 139202 - 139268 20.1 - Term 139249 - 139302 2.1 146 63 Op 1 . - CDS 139320 - 139499 337 ## EF0083 hypothetical protein 147 63 Op 2 . - CDS 139520 - 140755 1447 ## COG0477 Permeases of the major facilitator superfamily - Prom 140914 - 140973 7.1 - Term 140967 - 141020 9.3 148 64 Op 1 . - CDS 141052 - 141309 303 ## gi|257421416|ref|ZP_05598406.1| predicted protein 149 64 Op 2 . - CDS 141325 - 141630 360 ## gi|229547054|ref|ZP_04435779.1| conserved hypothetical protein 150 64 Op 3 . - CDS 141627 - 143024 1422 ## SaurJH9_0469 hypothetical protein 151 64 Op 4 . - CDS 143024 - 143539 490 ## gi|229547056|ref|ZP_04435781.1| conserved hypothetical protein - Prom 143588 - 143647 8.3 152 65 Tu 1 . - CDS 143694 - 144134 367 ## gi|315158491|gb|EFU02508.1| hypothetical protein HMPREF9508_01710 - Prom 144241 - 144300 12.3 - Term 144316 - 144357 8.1 153 66 Op 1 . - CDS 144371 - 144613 499 ## COG2261 Predicted membrane protein 154 66 Op 2 . - CDS 144637 - 145197 1000 ## COG1302 Uncharacterized protein conserved in bacteria 155 66 Op 3 . - CDS 145256 - 145768 812 ## COG1302 Uncharacterized protein conserved in bacteria 156 66 Op 4 . - CDS 145781 - 145972 305 ## EF0078 hypothetical protein 157 66 Op 5 . - CDS 145985 - 146557 574 ## EF0077 hypothetical protein 158 66 Op 6 . - CDS 146570 - 147463 175 ## PROTEIN SUPPORTED gi|163797523|ref|ZP_02191474.1| 50S ribosomal protein L9 - Prom 147495 - 147554 11.9 + Prom 147477 - 147536 7.2 159 67 Tu 1 . + CDS 147748 - 148401 795 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases + Term 148407 - 148452 15.0 160 68 Tu 1 . - CDS 148444 - 149361 768 ## EF0073 Cro/CI family transcriptional regulator - Prom 149418 - 149477 7.4 - Term 149862 - 149900 5.4 161 69 Tu 1 . - CDS 149908 - 152247 2630 ## EF0071 putative lipoprotein - Prom 152268 - 152327 4.1 - Term 152333 - 152369 -0.1 162 70 Tu 1 . - CDS 152425 - 153120 703 ## COG3010 Putative N-acetylmannosamine-6-phosphate epimerase - Prom 153150 - 153209 5.4 - Term 153208 - 153256 12.6 163 71 Op 1 29/0.000 - CDS 153265 - 154281 1287 ## COG2255 Holliday junction resolvasome, helicase subunit 164 71 Op 2 . - CDS 154294 - 154908 787 ## COG0632 Holliday junction resolvasome, DNA-binding subunit - Prom 155093 - 155152 6.6 + Prom 154944 - 155003 5.4 165 72 Op 1 . + CDS 155127 - 156113 1279 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases 166 72 Op 2 . + CDS 156128 - 156352 372 ## EF0064 hypothetical protein + Term 156355 - 156403 11.1 - Term 156331 - 156398 15.2 167 73 Op 1 . - CDS 156399 - 158078 2104 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 158127 - 158186 13.0 - Term 158166 - 158202 2.0 168 73 Op 2 . - CDS 158214 - 162179 4282 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases - Prom 162388 - 162447 11.7 - Term 162563 - 162606 12.6 169 74 Tu 1 . - CDS 162621 - 163997 1837 ## COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) - Prom 164057 - 164116 6.6 - Term 164148 - 164204 14.3 170 75 Tu 1 . - CDS 164208 - 165029 1008 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins - Prom 165055 - 165114 6.0 - Term 165137 - 165172 5.3 171 76 Op 1 42/0.000 - CDS 165173 - 166012 1153 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components - Prom 166041 - 166100 6.5 172 76 Op 2 25/0.000 - CDS 166174 - 166866 233 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 173 76 Op 3 . - CDS 166892 - 167845 1061 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin - Prom 167898 - 167957 5.4 - Term 167941 - 168004 16.3 174 77 Op 1 . - CDS 168012 - 168863 725 ## COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase - Prom 168898 - 168957 4.1 - Term 168982 - 169031 12.1 175 77 Op 2 . - CDS 169044 - 169289 306 ## COG4466 Uncharacterized protein conserved in bacteria - Prom 169330 - 169389 4.2 176 78 Op 1 5/0.000 - CDS 169404 - 169970 698 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 177 78 Op 2 6/0.000 - CDS 170056 - 170586 503 ## COG3688 Predicted RNA-binding protein containing a PIN domain 178 78 Op 3 7/0.000 - CDS 170601 - 171458 570 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 179 78 Op 4 8/0.000 - CDS 171448 - 171846 345 ## PROTEIN SUPPORTED gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 180 78 Op 5 4/0.042 - CDS 171843 - 173255 1706 ## COG0215 Cysteinyl-tRNA synthetase 181 78 Op 6 4/0.042 - CDS 173248 - 173787 615 ## COG1045 Serine acetyltransferase - Prom 173807 - 173866 8.8 - Term 173810 - 173863 13.2 182 79 Op 1 3/0.042 - CDS 174057 - 175514 1943 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases 183 79 Op 2 . - CDS 175567 - 176040 545 ## COG0245 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 184 79 Op 3 2/0.083 - CDS 176059 - 177204 1463 ## COG4956 Integral membrane protein (PIN domain superfamily) 185 80 Op 1 1/0.167 - CDS 177305 - 178675 1419 ## COG1066 Predicted ATP-dependent serine protease 186 80 Op 2 . - CDS 178754 - 179233 622 ## COG0756 dUTPase + Prom 179469 - 179528 8.5 187 81 Op 1 22/0.000 + CDS 179559 - 180374 937 ## COG0263 Glutamate 5-kinase 188 81 Op 2 . + CDS 180367 - 181614 1391 ## COG0014 Gamma-glutamyl phosphate reductase + Term 181618 - 181663 12.5 - Term 181607 - 181651 8.3 189 82 Tu 1 . - CDS 181706 - 182662 776 ## COG2378 Predicted transcriptional regulator - Prom 182894 - 182953 6.5 190 83 Op 1 . + CDS 182718 - 183185 572 ## EF0035 hypothetical protein 191 83 Op 2 . + CDS 183193 - 183702 716 ## COG4283 Uncharacterized conserved protein + Term 183750 - 183788 1.3 192 84 Tu 1 . + CDS 184291 - 186861 2468 ## COG4485 Predicted membrane protein + Term 186896 - 186928 -0.7 - Term 187065 - 187107 0.7 193 85 Tu 1 . - CDS 187142 - 187537 100 ## gi|312901266|ref|ZP_07760549.1| hypothetical protein HMPREF9510_02059 - Prom 187559 - 187618 12.8 - Term 188132 - 188192 10.2 194 86 Tu 1 . - CDS 188199 - 190790 2662 ## COG2898 Uncharacterized conserved protein - Prom 190887 - 190946 4.8 - Term 190918 - 190967 13.4 195 87 Op 1 . - CDS 190983 - 191363 476 ## COG0251 Putative translation initiation inhibitor, yjgF family - Prom 191398 - 191457 6.0 196 87 Op 2 3/0.042 - CDS 191463 - 192668 964 ## COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities 197 87 Op 3 3/0.042 - CDS 192692 - 194260 1708 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 194318 - 194377 4.4 198 88 Tu 1 . - CDS 194409 - 195179 713 ## COG1737 Transcriptional regulators - Prom 195202 - 195261 8.4 + Prom 195159 - 195218 9.4 199 89 Tu 1 . + CDS 195377 - 195580 190 ## EF0026 hypothetical protein + Term 195588 - 195625 6.0 - Term 195575 - 195612 6.0 200 90 Tu 1 . - CDS 195627 - 196154 655 ## COG3247 Uncharacterized conserved protein - Prom 196186 - 196245 8.0 - Term 196344 - 196394 8.2 201 91 Tu 1 . - CDS 196402 - 196779 426 ## COG4687 Uncharacterized protein conserved in bacteria - Prom 196809 - 196868 6.0 - Term 196859 - 196902 9.3 202 92 Op 1 13/0.000 - CDS 196941 - 197852 1341 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 203 92 Op 2 13/0.000 - CDS 197875 - 198678 1129 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 204 92 Op 3 . - CDS 198713 - 199705 1312 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB - Prom 199785 - 199844 6.2 - Term 199870 - 199907 -0.7 205 93 Tu 1 . - CDS 199940 - 200452 586 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB - Prom 200581 - 200640 13.1 - Term 200600 - 200650 13.3 206 94 Tu 1 . - CDS 200655 - 203540 2890 ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain - Prom 203580 - 203639 10.0 + Prom 203700 - 203759 7.6 207 95 Tu 1 . + CDS 203793 - 205424 1928 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains Predicted protein(s) >gi|307679018|gb|GL456779.1| GENE 1 202 - 1698 2075 498 aa, chain - ## HITS:1 COG:BS_lysS KEGG:ns NR:ns ## COG: BS_lysS COG1190 # Protein_GI_number: 16077150 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Lysyl-tRNA synthetase (class II) # Organism: Bacillus subtilis # 1 498 1 497 499 709 72.0 0 MAEEQQAHLEDLNDQMLVRREKMEALREEGIDPFGKRFDRTHNSAELHEQYDNHTKEELS EMNTEVSVAGRMMTKRGKGKAGFAHLQDREGQIQIYVRKDQVGDEAYELFKHADLGDFFG VTGQIMKTNTGEVTVKAQTITLLTKALRPLPDKYHGLTNVEQRYRQRYLDLISNKESFDR FMKRSQIISEIRRYLDGNGYVEVETPVLHNEAGGAAARPFITHHNALDMDLYLRIALELH LKRLIVGGMEKVYEIGRVFRNEGIDTTHNPEFTMLEAYTAYTDYQDVMDLTEGIIRNAAE KVLGTTDITYDGQAVDLGSPFKRLHMVDAVKEQTGVDFWQEMTIEEARALAKEHNVEITD AMTVGHIINEFFETFVEDTLQQPTFIYGHPVAVSPLAKKNPEDGRFTDRFELFIIGKEFA NAFTELNDPIDQRERFEEQEKEREQGNDEAHGVDEDFIEALEYGLPPTGGLGIGIDRLVM LLTDAQSIRDVLLFPTMR >gi|307679018|gb|GL456779.1| GENE 2 1792 - 2805 554 337 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase [Haemophilus influenzae R2866] # 1 327 22 347 353 218 37 2e-55 VGGKTMWKIGDVEIPNRVVVAPMAGISNAAFRVTVKEFGAGLVVCEMISDKGIKLRNKKT LEMLYIDEREYPLSVQIFGGDKETLVEAAKFVEENTQAAIIDINMGCPVNKIIKAEAGAK WLLDPNKVHEMVHAVSSAVSLPVTVKMRTGWDEDHLYAVDNALAAEQAGASAIAMHGRTR VQMYEGTANWDVLKEVKKHLTIPFMGNGDVKTPEDAKRMLEYVGADGVMIGRAALGNPWM IQRTKEYLETGELMPEPSPAEKINIAKVHLQRLVDLKGEKIAVREFRQHASYYLKGISRA AKVKVAINQVETQQAVVDLLDAFVEKISKVAVTTIEE >gi|307679018|gb|GL456779.1| GENE 3 2802 - 3698 1089 298 aa, chain - ## HITS:1 COG:BS_yacC KEGG:ns NR:ns ## COG: BS_yacC COG1281 # Protein_GI_number: 16077139 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Disulfide bond chaperones of the HSP33 family # Organism: Bacillus subtilis # 3 293 2 291 291 351 58.0 1e-96 MEDYLVKALCYKGSIRAYAISATETVSEAQRRHDTWSSSTAALGRTLIGALLLGATLKGD DKLTVKVQGNGPAGAIIVDSNGRGETKGYIKNPHVSLKLNATGKIDVRGAVGNEGIFTVI KDLGLKETFSGQTPIVSGEIGEDFTYFMAVSEQVPSAIGLGVLVDTDESVKAAGGFMIQV MPGADESTIDFIEQRLAEVPPISQLLENGETPEQVLYRLLGEDEVEILEKMPVQFKCDCS KEKFATALIAVGIDELNAMIDEDHGAEAVCQFCNNKYHYSEEELIELRDEAIRNTKQK >gi|307679018|gb|GL456779.1| GENE 4 3860 - 6016 1339 718 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 122 659 94 635 636 520 50 1e-146 MNKKNNGMKNGLYYVLVVLAMVMVVYFIFGNNNQQSPDIDYSTFQQQLEDGKVKDMTIQP TNGVYRIEGQYKEKQEVKDTGGLSLWGSTQASSKGFTTTVLPSDTTLAGIQDAAQNNKVK LVVKEQSTSGAWLSLLFSFLPLVIIFFFFYMMMSQQGGGGGGGGRVMNFGKSKAKEADKK ANRVRFSDVAGAEEEKQELVEVVEFLKDPRRFAELGARIPAGVLLEGPPGTGKTLLAKAV AGEAGVPFYSISGSDFVEMFVGVGASRVRDLFETAKKNAPAIIFIDEIDAVGRQRGAGMG GGHDEREQTLNQLLVEMDGFDGNEGVIVIAATNRSDVLDPALLRPGRFDRQILVGRPDVK GREAILRVHAKNKPLADDVDLKVVAQQTPGFAGADLENVLNEAALVAARRNKKKIDASDV DEAEDRVIAGPAKKDRVINKKEREMVAYHEAGHTIVGLVLSRARVVHKVTIIPRGRAGGY MIALPKEDQFLMTKEDMFEQIVGLLGGRTAEEIIFGVQSTGASNDFEQATGIARSMVTEY GMSDKLGPVQYEGNHQVFVGRDYGQTKAYSEQVAFEIDQEVRRILMDAHTKAHEIIEAHR EQHKLIAEKLLEYETLDAKAIKSLFETGKMPEGTDSDYPSEKEAQTFEEAKRALEEKEAQ KQVEEKQDFEEAKKELHDEAEEVKVESEQTEKEVQSEEKKDSDSNSEYDRNNYEDRYK >gi|307679018|gb|GL456779.1| GENE 5 6110 - 6655 724 181 aa, chain - ## HITS:1 COG:lin0251_2 KEGG:ns NR:ns ## COG: lin0251_2 COG0634 # Protein_GI_number: 16799328 # Func_class: F Nucleotide transport and metabolism # Function: Hypoxanthine-guanine phosphoribosyltransferase # Organism: Listeria innocua # 2 178 1 177 179 256 74.0 1e-68 MIEKDIEKVLISKEEILAKSAELGKQLTEEYQGKNPLVVGILKGAVPFMADLTREINTYL ELDFMDVSSYGNATVSSGEVKIVKDLDTNVEGRHILIVEDIIDSGRTLAYLVDLFRYRKA ASVKIVTLLDKPEGRVVDIKADYVGFDVPNEFVVGYGLDYAETYRNLPYIGVLKPEVYES N >gi|307679018|gb|GL456779.1| GENE 6 6674 - 8062 1096 462 aa, chain - ## HITS:1 COG:SPy0013 KEGG:ns NR:ns ## COG: SPy0013 COG0037 # Protein_GI_number: 15674260 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Streptococcus pyogenes M1 GAS # 2 443 4 407 428 202 32.0 2e-51 MFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTLMEQVAEKEQLQLVIAHVNHQLRE ASAQEAQYLATYCQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMT AHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYPKEELYQFAQRQAFV YFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSE AVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQ PQGSVMLEQQWQLAKSYDWLCLEQKQVALREEVTHLLVPGAGIYLSETEWLGLIATDKPF PLPEEINQWTGQLLAIPLTTATPLTVRHRQSGDRITLKPGFTKKLSRVFIDQKVPNEARE SAWVITDEQEEIIWVPKFANSYLSIPLETDKIHYRLLFKTKE >gi|307679018|gb|GL456779.1| GENE 7 8148 - 8627 361 159 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|218290661|ref|ZP_03494752.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius LAA1] # 1 159 1 134 134 143 49 5e-33 MSIEVGAKLPGKVSGITNFGAFIDLGEGKTGLVHISEVSNGFVKDIHDVLTVGDEVTVKV TSVGDDGKIGLSIRKAQEPAEGQQPKREFQRRENNYENRDRNPRAGGKKPFNKPQANNNN NKQDFDSLMSSFLKDSDDRLSSLKRNTEGKRGGRGGRRG >gi|307679018|gb|GL456779.1| GENE 8 8672 - 9151 404 159 aa, chain - ## HITS:1 COG:no KEGG:EF0261 NR:ns ## KEGG: EF0261 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 159 1 159 159 199 100.0 2e-50 MGKNEKNSKKVAALENDYTKEQYVEFQKQQKQLIFRRRRLAAIFLVAFIIFAFSGIQLMK DYHRLGAFKQERADAIAESVAVDKKVKDLKKDVALLKDDDYVAKLARSRFLLSKEGEQIY PTPEQMKKTQTSGAEESKSSSEKNSQSQSSTETTKSSAE >gi|307679018|gb|GL456779.1| GENE 9 9406 - 9669 361 87 aa, chain - ## HITS:1 COG:L1001 KEGG:ns NR:ns ## COG: L1001 COG1188 # Protein_GI_number: 15671997 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) # Organism: Lactococcus lactis # 1 87 17 103 105 97 71.0 7e-21 MRLDKFLKVSRIIKRRTVAKEVADKGRIQINGVLAKSSSTVKIGDLVKIQFGNRILEVEV LQLNDSTKKEDATKMYEIKSETRVSEE >gi|307679018|gb|GL456779.1| GENE 10 9684 - 11273 1745 529 aa, chain - ## HITS:1 COG:lin0247 KEGG:ns NR:ns ## COG: lin0247 COG2244 # Protein_GI_number: 16799324 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Listeria innocua # 1 527 1 524 529 300 36.0 6e-81 MAQKEMQRMMQGAVVLTIASFIAKVLSAFYRVPFQNFVGDEGFYVYQQVYPIYGIAMTLA LSGLPQFISKIVAEQPDIRSQKQVLRQLYPYVLWLAIACWAFFFFGSQEIAISMGDAALQ PLMEVVSFTFLLVPILSFYRGNFQGHLLMVPSGISQVMEQFVRVGVILVAALSYHYFGGS IYQTGTVAMSGALAGGILAVLVLWYYNRKILSGSTEYLHQWKIMPQTTGLFKRLMIEGGL VSLYSAFLILFQLIDSFKVKNALMLFGLSDLAAKVDKGVYDRGQPLVQLGLVIALALSST FLPGLTKYFMKKDRQQFLQVAKIFLRLTTTLASAASIGLMMLLPYMNFTLFKDYKGNDVL GVYVLSIAFMAIIQAYQSIEQSRNRFKGPLVAAGVGLLVKLLTTGFFTIRWGTLGASWST ILGLLATLFVLVRQSDAAINCFVRERNFLKKLLLSLAIMMLSLLVYQGIISILFQGVHHR SQAFFVTVVGVAVGGTVFISTIIKLELFTIREWLSLPYGAKILRMRQKK >gi|307679018|gb|GL456779.1| GENE 11 11289 - 14828 3719 1179 aa, chain - ## HITS:1 COG:lin0246 KEGG:ns NR:ns ## COG: lin0246 COG1197 # Protein_GI_number: 16799323 # Func_class: L Replication, recombination and repair; K Transcription # Function: Transcription-repair coupling factor (superfamily II helicase) # Organism: Listeria innocua # 27 1166 28 1168 1179 1182 53.0 0 MNIIERISQTEIAKSWRSQLMTTGTRQLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLY YANQLVDDFLNILPSEQVHLFPVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVP VAGLRKYLPTKETWQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIV DVYPLNAEYPVRVELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMT RLQDALEKRLATAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLYQLKTTLLDYL PENSLLFVDDYSRMMETEREIAREEAEWQTLKIEEMRVFSEQTFGVDFHDQLRKTARNTT FFSLFQKGMGNLRFQEVHNFQYRSMQQFFGQMPLLKAEVDRWQKQNQTVVVFVPTKERIQ KVEELFQDFDIPSVVSNWDQLLDGHVQIVQGALQTGFELPKNKLVAITEKEIFHTTTKKR ARRQTISNAERLKSYSDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDDKL FIPVTQLNLIQKFVASESKTPKINKLGGSEWTKTKRKVASKIEDIADDLILLYATRESEK GYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVAL RAAFKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFPVEIGLLSRFRTKKQQNETIEKI KHGQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPI PRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRV DTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPN ANTLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTEL GSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVARKQGKNIQDQKTSVE IDLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYEELEADLLDRFGEYPDEVAHLLTT GRIKMDGDRALLESIRKRDRKVKFVLSKIGTKTYSVEQLFEALSATSLKADLAVEKEQMT ISLKLPKDCKEAVWIQEIATFTTALRQEKYKHSQETDSL >gi|307679018|gb|GL456779.1| GENE 12 14848 - 15414 625 188 aa, chain - ## HITS:1 COG:SP0005 KEGG:ns NR:ns ## COG: SP0005 COG0193 # Protein_GI_number: 15899954 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptidyl-tRNA hydrolase # Organism: Streptococcus pneumoniae TIGR4 # 2 187 3 189 189 223 57.0 2e-58 MKVIVGLGNPGSKYKETKHNIGFITLDEIAYRQNVSFNNSNFEADIAEFFIGTEKVLLVK PLTFMNESGRSVGPLLTYFGVDEEDLIVIYDDLDLEVGKIRLRQKGSAGGHNGIKSLIAH LGTNVFPRIKIGIGRPSKNDTVIHHVLSTFPKETHGEMLLAVKKAADAALYACEGHTFVE TMNQFNGK >gi|307679018|gb|GL456779.1| GENE 13 15353 - 15532 96 59 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLCFVSLYLLPGFPSPTITFIFHSPWIISLPTQNGWEAYALPSFIHYTIEIKKLAVFED >gi|307679018|gb|GL456779.1| GENE 14 15750 - 16733 1378 327 aa, chain + ## HITS:1 COG:SPy1151 KEGG:ns NR:ns ## COG: SPy1151 COG0039 # Protein_GI_number: 15675128 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Streptococcus pyogenes M1 GAS # 6 326 3 324 327 473 75.0 1e-133 MTAAAGNKDHQKVILVGDGAVGSSYAFALVTQNIAQEVGIIDINVPKTEGDALDLSHALA FTSPKKIYAATYDDCHDADLVVLTAGAPQKPGETRLDLVHKNLKINKEIVTTIVDSGFNG IFLVAANPVDILTYSTWKFSGFPKERVIGSGTSLDSARFRQAIAELVDVDARNVHAYILG EHGDTEFPVWSHANVAGLQIYEWVKNNPDVDEEAMVNLFFNVRDAAYTIIEKKGATFYGI AVALARITKAILNDENSVLPLSVYLEGEYGQNDIYIGAPAIINRQGVKQVIEIPLTDAEQ EKMEASASALKEVIETAFAKFEAEEAK >gi|307679018|gb|GL456779.1| GENE 15 16960 - 18450 1723 496 aa, chain - ## HITS:1 COG:FN0454 KEGG:ns NR:ns ## COG: FN0454 COG1012 # Protein_GI_number: 19703789 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Fusobacterium nucleatum # 6 496 1 491 491 620 60.0 1e-177 MSKKEINQVVGSSYQLYINGEWTTGSGNKMIASYNPSNGEKLAEFVDATNADVDRAVEAA QEAFQIWKDVDVVTRSNLLLKIADLIEENQEHLAMVETLDNGKPLRETQSIDVPASADHF RYFASVIRGEEGSVKEFDKDTLSIVVKEPIGVVGQIIPWNFPLLMGAWKLAPALAAGNTV VIHPSSSTSLSLLELFKIFDQVLPKGVVNLITGRGSDSGNYMLAHPGFDKLAFTGSTEVG YTVAKAAADRLIPATLELGGKSANIIFEDANWERALEGVQLGILFNQGQVCCAGSRVFVQ SGIYDQFVEALKEKFEQVNVGFPWEKDVEMGAQINEHQLEEILKYVEIGVKEGATLITGG QRLTENGLDKGAFLAPTLLANGTNTMCVAQEEIFGPVATVIKFETEEEVIRLANDSEYGL GGAVFSQDINVALRVARGVRTGRMWVNTYNQLPAGAPFGGYKKSGIGRETHKSMLDAYTQ MKNIYIVTKEEADGLY >gi|307679018|gb|GL456779.1| GENE 16 18726 - 20231 1651 501 aa, chain - ## HITS:1 COG:SA2437_1 KEGG:ns NR:ns ## COG: SA2437_1 COG1705 # Protein_GI_number: 15928230 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Staphylococcus aureus N315 # 52 364 186 475 502 154 35.0 4e-37 MKKQFALFSTLLLLGSSMPVGAFAEGNNLVAENSSVAETTAEATTAEATEMTATSETTEA TEETTTETESSTESSESATTESTETSGTETTDSTTDSTSTSTTESTTDSTSTSTTESTTD STSTSTTESSTTPTTTPSSSKEQPKPGTSTSESKQPAKPVTPTAPAEKPVEQPTASTPQP EIVPPVTNETVGLVEDDETFTVSKTKKTEEFIQEIGESARKVAKDKNLYASVMIAQAILE SGSGNSKLSQKPNYNLFGIKGDYKGQSVSFITYEDNGFGNLYTVEAKFRQYPTYKESMED YAKLLKNGLDSNKDFYHGVWKTEAKSYKEATRFLTGKYATDKDYHKKLNALIKTYDLTYY DKEKATVEPMESNFPAYNGKNYDTFNSYAWGNCTQYVYNRITQLGKRVDLTMGNGQDWGE TGRARGYKVSRTPKAGAAVSFPAGVLGADNTYGHVAFVEKVFKDGSILISEMNVKGLNVV STRTISADETHLMNYIVPKDK >gi|307679018|gb|GL456779.1| GENE 17 20465 - 20977 652 170 aa, chain - ## HITS:1 COG:SPy1427 KEGG:ns NR:ns ## COG: SPy1427 COG1827 # Protein_GI_number: 15675342 # Func_class: R General function prediction only # Function: Predicted small molecule binding protein (contains 3H domain) # Organism: Streptococcus pyogenes M1 GAS # 1 170 1 172 173 135 41.0 3e-32 MDGEIRRREIVKRLRETEKPISATRFAKAFDVSRQIIVGDVALLRATGVEIVATARGYML EQPLEGIERKIACQHTPEQTREELSVIVAKGGEVVDVSIAHPLYGELIGSLRIQSEKDID KFMDKYQKEHATLLSVLTGGVHLHTIRCADEETFQEIKEALRKKSILFEG >gi|307679018|gb|GL456779.1| GENE 18 20988 - 21833 951 281 aa, chain - ## HITS:1 COG:ylaD KEGG:ns NR:ns ## COG: ylaD COG0110 # Protein_GI_number: 16128443 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Escherichia coli K12 # 6 185 3 183 183 216 57.0 3e-56 MEEFKSEKEKMIAGALYFASDPELVADRKKAREQMALINQQPDTYIRRQLIEETFGKVGV GTYIEPMIQFDYGYNISVGKNFYANFNNVFLDVCPIEIGDNCMFGPNVQLYTAEHPLQAA KRNSGMESGKRIIIGNNVWIGGGAIVLPGVTLGDNVVVAAGAVVTKSFPENCVIAGNPAR IIKELTEDDAPTTSLEQQRAKINQIDKELVRLLEQRMDVVAEIAAVKKKAGHAVFDSERE QQVLETILNHVENAEYEETLSETFQGIMDASKRFQEKHLGE >gi|307679018|gb|GL456779.1| GENE 19 21838 - 22551 702 237 aa, chain - ## HITS:1 COG:lin2882 KEGG:ns NR:ns ## COG: lin2882 COG0846 # Protein_GI_number: 16801942 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Listeria innocua # 17 233 12 229 229 268 55.0 6e-72 MQDITQAEAIHWLATQQKITFLTGAGISTASGVPDYRSLKGVYQGIQQPEYLLSRTCLKT EPEKFYQFVKTLYHPDAQPNIIHQKMAQLEQMKRGKIVSQNIDGLHRKAGSQEVVDFHGN LYECYCQTCGATVPWQDYLLSDRHADCHGQIRPAITLYEEGLSEEAIEKAIQAVASADLI VIVGTSFQVHPFCDLIHYKQPTATILAINQTPLFLQQPYYFLEAKAETIFAELTIKE >gi|307679018|gb|GL456779.1| GENE 20 22724 - 23020 400 98 aa, chain + ## HITS:1 COG:no KEGG:EF0248 NR:ns ## KEGG: EF0248 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 98 1 98 98 134 100.0 1e-30 MVAFIIYWAAIIACIAWGVLSIWFSVFYLSRKENGNLWAFAFFNVIAIIALAIVLLVYKT WDFGILTYSSLIYTILASLGVLTVLQAILGREPKAVKA >gi|307679018|gb|GL456779.1| GENE 21 23579 - 25162 1949 527 aa, chain + ## HITS:1 COG:SP0453_1 KEGG:ns NR:ns ## COG: SP0453_1 COG0834 # Protein_GI_number: 15900370 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Streptococcus pneumoniae TIGR4 # 11 330 8 325 325 300 50.0 5e-81 MNKKVFSFSLLLVTLFSLLGMTTNASAEENGEFRVGMEAGYAPFNWSQKNDAHGAVPIQG NSYAGGYDVQISKKIADGLGRKLVIVQTKWDGLAPALQSGKIDAIIAGMSPTAERKKEIA FTNPYYESQFVVIVKKDGKYANAKSLKDLADAKITAQLNTFHYGLIDQIPNVNKQQAMDN FSAMRTALASGMIDGYVSERPEGITATSVNKELKMLEFPKENGFDASAEDSQVAVGMRKG DPDIEKVNKILAGISQDERTKIMDQAIKDQPAATDSDEQKTGLINDFKNIWNQYGDMFLR GAGLTLFIALIGTVVGTTLGLLIGVFRTIPDSENPVARFFQKLGNLILSIYIEVFRGTPM MVQAMVIFYGLALAFGISLDRTVAALFIVSVNTGAYMSEIVRGGIFAVDKGQFEAAQAIG MTHGQTMRKVVIPQVLRNILPATGNEFVINIKDTAVLSVIGVADLFFQGNAASGANFQFF QTFTIVGIMYLVMTFVITRILRVVERKMDGPSAYVKVEELTEEGKES >gi|307679018|gb|GL456779.1| GENE 22 25174 - 25914 279 246 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 226 1 223 305 112 30 2e-23 MSAIIEIEHLRKSFGENEVLKDINMNVNKGEVVTIIGSSGSGKSTLLRCINLLEKPTDGK IIYNGKNVLERGYSLPKYRTHLGMVFQSFNLFNNMNVLENCTSGQMTVLKRNKEEAKKIA LENLEKVGMARFIDAKPAQLSGGQKQRVAIARALSMDPDVLLFDEPTSALDPEMVGEVLK TMKNLAHTGLTMVIVTHEMEFARDVSDRVIFMDKGVIAEEGTAEDIFVHPKEARTKEFLH RILTKN >gi|307679018|gb|GL456779.1| GENE 23 25961 - 26530 650 189 aa, chain - ## HITS:1 COG:FN0535 KEGG:ns NR:ns ## COG: FN0535 COG1611 # Protein_GI_number: 19703870 # Func_class: R General function prediction only # Function: Predicted Rossmann fold nucleotide-binding protein # Organism: Fusobacterium nucleatum # 2 187 4 189 192 205 51.0 4e-53 MKKMAVYCGASLGNEPIYQQAAVALAAWMKENHYDLVYGGGNVGLMGTVADTLLAEGGEV IGVMPTFLMEREIAHNGITKMHTVSDMHARKKKMIELADVYLALPGGPGTLEEISEVISW GRVGEHMNPCILYNVNGYYDLLAAFFDKMVETNFLTAADRAKIFISDSLEEIGAFIDSYE PPMIRQYKN >gi|307679018|gb|GL456779.1| GENE 24 26719 - 27210 443 163 aa, chain + ## HITS:1 COG:lin2246 KEGG:ns NR:ns ## COG: lin2246 COG0454 # Protein_GI_number: 16801311 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Listeria innocua # 5 161 1 157 157 102 35.0 2e-22 MSTSLTIRLVAEADWPALHTLDQIIWTKKNTPAEIQPLSLAAYQEKMKDETIFVAISGQQ LAGFIEVHPPTSLAAHQKQWLLSIGVSPDFQGQGIGGSLLSYVKDMAQISGIHKLSLRVM ATNQEAIRFYEKHDFVQEAHFKEEFYINGHYCDDYQYAYFIEK >gi|307679018|gb|GL456779.1| GENE 25 27301 - 28656 1702 451 aa, chain + ## HITS:1 COG:SA0180 KEGG:ns NR:ns ## COG: SA0180 COG1114 # Protein_GI_number: 15925890 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Staphylococcus aureus N315 # 1 428 1 428 449 458 60.0 1e-129 MQKKLVWRDYLYVGSMLFGLFFGAGNLIFPVHMGQEAGASVFLANLGFLATGIGLPFLGV IAMGVSKSSGVFDLASRINRRYALIFTLLLYLTIGPFFALPRLATTSFEIGLAPFVPKDL QWLVLAGFSALFFLAVWLFSRKPSKILDYVGKFLNPLFLALLGILIVLAFVKPLGHVASA AVGENYISSPFFKGFTEGYNTLDALASLAFGIVVVSTLRNMGVEKPGDIAKGMIKSGAFS VVLMGIIYTLLAYMGTMSIGAFPISENGGIALAQIANYYLGLPGSILLAFIVVLACLKTG IGLSTAFSETFEEMFPKVSYQKFLAIVVILPAIFANVGLTNIIQFAVPVLMFLYPLAITL MLLVIISPIFKHRREVYQATTYITLIAAVLDALNSSPAFIKDTAFVTTLLEKAGQYLPLF TIGMGWVVPATVAFLISWVWVMISKKDPILD >gi|307679018|gb|GL456779.1| GENE 26 28789 - 29100 585 103 aa, chain + ## HITS:1 COG:L158972 KEGG:ns NR:ns ## COG: L158972 COG0393 # Protein_GI_number: 15672916 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 101 5 104 108 92 53.0 1e-19 MLVTTTERISGQEYEIIGEVFGLTTRSKNMFKDLGAGLKSVVGGEIKGYTDMQREARDQA IERLKAEASKLGADAVVMMRFDSGTIGTDMQSVVAYGTAVKYI >gi|307679018|gb|GL456779.1| GENE 27 29151 - 29900 843 249 aa, chain - ## HITS:1 COG:SP1599 KEGG:ns NR:ns ## COG: SP1599 COG0101 # Protein_GI_number: 15901439 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Streptococcus pneumoniae TIGR4 # 1 248 1 248 249 321 64.0 7e-88 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGHSVTVFGSGRTDAGVHAMG QVIHFDYPQERPLEKMRFALDTQTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIGKP RSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHVNE TGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPEGL YLAEVKYEN >gi|307679018|gb|GL456779.1| GENE 28 29919 - 30713 851 264 aa, chain - ## HITS:1 COG:lin2783 KEGG:ns NR:ns ## COG: lin2783 COG0619 # Protein_GI_number: 16801844 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Listeria innocua # 1 249 2 250 266 318 63.0 6e-87 MNKLIFGRYIPGDSFIHRLDPRAKLLASFYFIGIIFLANNWQSYVLIAAFTAFAISLSKI SARFFIRGVRPLLWLILFTVALQTLFTQGGEVYFQWGIISITQFGVTNGLFIFCRFVLII FMSTLLTLTTAPLELSDAIEYLLRPLRVVKFPVHEVSLMLSIALRFVPTLMDETEKIMNA QRARGVDFGEGNLLQKMKAIVPLLIPLFVSSFNRAEDLATAMEARGYQGGEGRTKYRILH WHLRDTIVMFGFVLLTIGLFVLRT >gi|307679018|gb|GL456779.1| GENE 29 30713 - 31582 440 289 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 5 278 132 396 398 174 38 4e-42 MDIRFKQVDFTYQPNTPFEQRALFDINLTIQDGSYTAIVGHTGSGKSTLLQHLNALVKPT KGQVTIGERVITPETDNKNLKPIRKKVGIVFQFPEAQLFEETVERDIAFGPKNFGVSDEE AKKLAKKMLDLVGLDEKYLQHSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKG RKEMMEMFSRLHKEHNMTIVLVTHLMDDVANYADHVIVLEKGQIVRAGAPQEVFQETQWL KEKQLGVPTAAEFAEKLVAKGFSFEQLPLTADQLADQLLKKMQEAGEAK >gi|307679018|gb|GL456779.1| GENE 30 31558 - 32397 1128 279 aa, chain - ## HITS:1 COG:L75718 KEGG:ns NR:ns ## COG: L75718 COG1122 # Protein_GI_number: 15672259 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Lactococcus lactis # 1 272 1 272 277 314 57.0 1e-85 MQPIIELNNIQFNYQPEDASPALKDVSFSIQQGEWVAIIGHNGSGKSTLAKTINGLLLPA AGTIKVGGKELNEANVWDIRRMVGMVFQNPDNQFVGSTVEDDVAFGLENQGIPRDEMVER VHDALERVRMLAFAKREPARLSGGQKQRVAIAGVVALRPDIIILDEATSMLDPEGRAEVI ATIQKIKEESNLTVISITHDIDEAANANRILVMRQGQLTNEGTPEKIFSAGEALVEMGLD LPFPEKLKVALKERGVVVPTNYLTEEGMVDWLWTSVLNK >gi|307679018|gb|GL456779.1| GENE 31 32599 - 33774 1191 391 aa, chain - ## HITS:1 COG:lin0542 KEGG:ns NR:ns ## COG: lin0542 COG1473 # Protein_GI_number: 16799617 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Listeria innocua # 3 387 4 388 393 565 71.0 1e-161 MKKIKALVKQHSQEMIAFRRDLHQHPELQFEEFRTTEKVAAVLDQLGITYRKTEPTGLIA EIVGGKPGRVVALRADMDALPVQELNEDLAYKSLEAGKMHACGHDSHTAMLVTAAKVLKE IQEELQGTVRLIFQPSEENAQGAKAMVAQGAMTGVDDVFGLHIWSQMPVGTASCRVGSSF ASADIFSVDFKGRGGHGAMPNACIDAAVIASSFVMNLQTIVSRETDPLDPVVVTIGRMDV GTRFNVIAENARLEGTVRCFSVATRNRVEQALQRYAEQTAAIYGGTASLDYQYGTLPVIN DEQDALFAQTLIKENFGEAALRQEEPTTGGEDFSYYTEHASGCFALVGSGNPEKDTEWAH HHGRFNIDEDAMAMGAELYAQYAFEYLKTHF >gi|307679018|gb|GL456779.1| GENE 32 33790 - 34989 1345 399 aa, chain - ## HITS:1 COG:no KEGG:EF0235 NR:ns ## KEGG: EF0235 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 399 1 399 399 659 100.0 0 MSQMFAFSLLMVILYIGDVVSIKTKAWIPSVFVCGVLFILGYWTIFPQNIVEVAGIPTVV ATLLMYLLITNMGTLLSVKELVNQWKTIVIALSGILGIIALLLAVGTFVFDLKTVLVAIP PLVGGLVSSLVMSEAAQSAGLASLSVLAILIYVIQGFAGYPLTSIVLKKEGKRKLQEYRA GTWQPVHEQEGQETGAEPDVPKLFEKVPKRYHTDYSRILRLALVATLAYYVSVWTAPFVT ISPFVLCLCFGVIATSLGFLEKQPLQKANSFGFAILGLMLFVFDGLKQATPEMLMDLFLP MIGIIVIGVIGMYIFSAIVGRVLGVSKEMAFAVSLTALYGFPADYIITNEVIQSLTEDEQ EQAALTSHLMPPMLVAGFVTVTIVSVILAGIFSSILLSL >gi|307679018|gb|GL456779.1| GENE 33 35264 - 35647 618 127 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374878|ref|NP_814031.1| 50S ribosomal protein L17 [Enterococcus faecalis V583] # 1 127 1 127 127 242 99 8e-63 MSYRKLGRTSSQRKAMLRDITTDLIINERIVTTEARAKEVRSTVEKMITLGKRGDLHARR QAATFVRNEVASVREEDESIVVESALQKLFNDLGPRFAERQGGYTRILKTEPRRGDAAPM VVIEFVK >gi|307679018|gb|GL456779.1| GENE 34 35721 - 36659 1081 312 aa, chain - ## HITS:1 COG:BS_rpoA KEGG:ns NR:ns ## COG: BS_rpoA COG0202 # Protein_GI_number: 16077211 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, alpha subunit/40 kD subunit # Organism: Bacillus subtilis # 1 312 1 314 314 431 74.0 1e-121 MIEFEKPRIEKIDENRDYGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAITNIQIDGVL HEFSTIPGVREDVTQIILNIKGLALKLYAEEEKTLEIDITGPATVTAGDIIVDSDVEILN KDLVICSVAEGATFHARLTVKPGRGYVQADENKKEDMPIGVLPVDSIYTPVRRVNYQVEN TRVGRRDDFDKLTMEIWTDGSIIPQEALSLAAKIMTEHLDIFVNLTDEAKNAEIMVEKEE TQKEKMLEMTIEELDLSVRSYNCLKRAGINTVQELTNKSEPEMIKVRNLGRKSLEEVKLK LHDLGLGLRKDD >gi|307679018|gb|GL456779.1| GENE 35 36740 - 37129 654 129 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374876|ref|NP_814029.1| 30S ribosomal protein S11 [Enterococcus faecalis V583] # 1 129 1 129 129 256 100 6e-67 MAAKKVSRKRRVKKNIESGVAHIHSTFNNTIVMITDTHGNALAWSSAGSLGFKGSKKSTP FAAQMAAEAATKVAMEHGLKTVDVTVKGPGSGREAAIRSLQATGLEVTAIRDVTPVPHNG CRPPKRRRV >gi|307679018|gb|GL456779.1| GENE 36 37157 - 37522 606 121 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374875|ref|NP_814028.1| 30S ribosomal protein S13 [Enterococcus faecalis V583] # 1 121 1 121 121 238 100 2e-61 MARIAGVDIPRDKRVVVSLTYIYGIGNTTAKKVLANVGVSEDVRVRDLTNEQTDAIRAEI DKLKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPTRGQNTKNNARTRKGPTKTVAGKK K >gi|307679018|gb|GL456779.1| GENE 37 37542 - 37658 210 38 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374874|ref|NP_814027.1| 50S ribosomal protein L36 [Enterococcus faecalis V583] # 1 38 1 38 38 85 100 2e-15 MKVRPSVKPMCEHCKVIRRKGRVMVICPANPKHKQRQG >gi|307679018|gb|GL456779.1| GENE 38 37691 - 37909 303 72 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 [Streptococcus pneumoniae TIGR4] # 1 72 1 72 72 121 80 3e-26 MAKEDMIEVEGTVVETLPNAMFKVELENGHQVLATVSGKIRMHYIRILPGAKVTVELSPY DLTRGRITYRFK >gi|307679018|gb|GL456779.1| GENE 39 38120 - 38770 837 216 aa, chain - ## HITS:1 COG:L140714 KEGG:ns NR:ns ## COG: L140714 COG0563 # Protein_GI_number: 15674059 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Lactococcus lactis # 1 213 1 214 215 300 68.0 9e-82 MNLILMGLPGAGKGTQAEKIIDTYGIPHISTGDMFRAAMKNETALGLEAKSYIDKGELVP DEVTNGIVKERLAEPDTDKGFLLDGFPRTLDQAKALDTMLKELNKKIDAVIDIHVEEDVL IERLAGRFICRTCGATYHKLFNPPKVEGTCDRCGGHEFYQREDDKPETVKNRLAVNIESS APILAFYKEQGLMHTIDGNREIDTVFSDVKKIIDEN >gi|307679018|gb|GL456779.1| GENE 40 38857 - 40155 762 432 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 [alpha proteobacterium BAL199] # 10 432 19 439 447 298 38 2e-79 MFKLLKNAFKVKDIRSKILFTVLILFVFRLGAHITVPGVNAKGLSDLSSLPFLNMLNMVS GSAMQNFSIFSMGVSPYITASIIIQLLQMDIVPRFVEWSKQGEVGRKKLNQATRYLTIVL GVAQSMGITAGFNSLSQTGIVNNPTLGTFVMIAVILTAGTMFVTWMGEQITEKGIGNGVS MIIFAGIISRLPGAVKEIYEDYFVNIESSRIWQSVIFIAILVIAILVIVTVVTFFQQAER KIPIQYTKRVSGAPTSSYLPLKVNAAGVIPVIFASSLIATPNAILQAFSSKFAGENWYDI MTKIFSYNTVPGAIIYTVLIVAFTFFYAFVQVNPEKLAENLQKQGSYIPSVRPGKGTEEY VSGVLMRLSVVGSIFLGLVALLPIIAQMVWNLPQSIGLGGTSLLIVIGVALETTKQLEGL MMKRQYVGFINK >gi|307679018|gb|GL456779.1| GENE 41 40156 - 40596 731 146 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374870|ref|NP_814023.1| 50S ribosomal protein L15 [Enterococcus faecalis V583] # 1 146 1 146 146 286 100 7e-76 MKLHELKPAEGSRQVRNRVGRGTSSGNGKTAGRGQKGQKARSGGGVRLGFEGGQTPLFRR LPKRGFTNINRKDYAVVNLDTLNRFEDGTEVTPVVLKEAGIVKNEKAGIKVLADGELTKK LTVKAAKFSKSAQEAIEAAGGSIEVI >gi|307679018|gb|GL456779.1| GENE 42 40644 - 40823 286 59 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374869|ref|NP_814022.1| ribosomal protein L30 [Enterococcus faecalis V583] # 1 59 1 59 59 114 100 3e-24 MAELKITLKRSVIGRPQNQRATVKALGLGKVNSTVTKPANEAIKGMVNTISHLVDVEEV >gi|307679018|gb|GL456779.1| GENE 43 40838 - 41338 817 166 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374868|ref|NP_814021.1| ribosomal protein S5 [Enterococcus faecalis V583] # 1 166 1 166 166 319 100 7e-86 MVYIDPKHLELEDRVVAINRVTKVVKGGRRLRFAALVVVGDKNGHVGFGTGKAQEVPEAI RKAIEDAKKNLVEVPMVGSTIPHEVIGVFGGGRILMKPAVEGSGVAAGGPVRAVLELAGV ADITSKSLGSNTPINVVRATVEGLKQLKRAEEVAALRGKSVEEIIG >gi|307679018|gb|GL456779.1| GENE 44 41359 - 41724 599 121 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227520008|ref|ZP_03950057.1| 50S ribosomal protein L18 [Enterococcus faecalis TX0104] # 1 121 1 121 121 235 99 1e-60 MKIVITKPDKNKTRQKRHRRVRNKISGTAECPRLNIFRSNKNIYAQVIDDVAGVTLASAS ALDKEISGGTKTETAAAVGKLVAERAAEKGIKKVVFDRGGYLYHGRVQALAEAARENGLE F >gi|307679018|gb|GL456779.1| GENE 45 41876 - 42412 909 178 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227520007|ref|ZP_03950056.1| 50S ribosomal protein L6 [Enterococcus faecalis TX0104] # 1 178 1 178 178 354 99 1e-96 MSRIGNKVVVLPAGVEIKQDGNNITVKGPKGELTREFSSDIKMNIEGNEVTFTRPNDSKE MKTIHGTTRANFNNMVVGVSEGFQKALELIGVGYRAQVQGNKLTLNVGYSHPVEMTAPEG VTFEVPANTQVIVKGINKEVVGELAANIRGVRPPEPYKGKGIRYVGEFVRRKEGKTGK >gi|307679018|gb|GL456779.1| GENE 46 42444 - 42842 660 132 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374865|ref|NP_814018.1| 30S ribosomal protein S8 [Enterococcus faecalis V583] # 1 132 1 132 132 258 100 1e-67 MVMTDPIADFLTRIRNANMVKHETLEVPASKIKRDIAEILKREGFIRDVEYIEDDKQGVI RVFLKYGKNEERVITNLKRISKPGLRAYVKADEVPKVLNGLGIAIISTSEGVITDKEARA KNIGGEVIAYVW >gi|307679018|gb|GL456779.1| GENE 47 42878 - 43063 333 61 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374864|ref|NP_814017.1| 30S ribosomal protein S14 [Enterococcus faecalis V583] # 1 61 1 61 61 132 98 9e-30 MAKKSMIAKNKRPAKHSTQAYTRCERCGRPHSVYRKFHLCRICFRELAYKGQIPGVKKAS W >gi|307679018|gb|GL456779.1| GENE 48 43082 - 43621 896 179 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374863|ref|NP_814016.1| 50S ribosomal protein L5 [Enterococcus faecalis V583] # 1 179 1 179 179 349 100 5e-95 MNRLKEKYIKEVTPSLVEKFNYSSVMQTPKVDKIVINMGVGDAVSNAKNLDKAVEELALI TGQKPLITKAKKSIAGFRLREGMPIGAKVTLRGERMYEFLDKLVTVSLPRVRDFHGVSKK AFDGRGNYTLGIKEQLIFPEVDYDLVDKVRGMDIVIVTTANTDEESRELLAQLGMPFQK >gi|307679018|gb|GL456779.1| GENE 49 43647 - 43958 517 103 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374862|ref|NP_814015.1| 50S ribosomal protein L24 [Enterococcus faecalis V583] # 1 103 1 103 103 203 100 4e-51 MFVKKGDKVKVITGKDKNKEGVVLAAFPKQDKVIVEGVNVVKKHQKPNQAAPQGGILEVE APIHVSNVMVIDPSNGEATKVAFKEVDGKKVRVSKKTGEVLDK >gi|307679018|gb|GL456779.1| GENE 50 43994 - 44362 591 122 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374861|ref|NP_814014.1| ribosomal protein L14 [Enterococcus faecalis V583] # 1 122 1 122 122 232 99 1e-59 MIQQESRLRVADNSGAREILTIKVLGGSGRKTANIGDVIVATVKQATPGGVVKKGEVVKA VIVRTKSGARRADGSYIKFDENAAVIIRDDKSPRGTRIFGPVARELRENNFMKIVSLAPE VL >gi|307679018|gb|GL456779.1| GENE 51 44420 - 44707 476 95 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227520001|ref|ZP_03950050.1| 30S ribosomal protein S17 [Enterococcus faecalis TX0104] # 1 95 1 95 95 187 98 2e-46 MEGGQTRMTEERNQRKVYQGRVVSDKMDKTITVVVETKKNHPIYGKRMKYSKKYKAHDEN NTAKVGDIVKIMETRPLSATKRFRLLEVVEEAVII >gi|307679018|gb|GL456779.1| GENE 52 44710 - 44898 296 62 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374859|ref|NP_814012.1| ribosomal protein L29 [Enterococcus faecalis V583] # 1 62 1 62 62 118 100 2e-25 MKVKEIRELTTAEMLDKEKQLKEELFNLRFQLATGQLENTARIKEVRQSIARIKTVLREQ AN >gi|307679018|gb|GL456779.1| GENE 53 44888 - 45322 753 144 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374858|ref|NP_814011.1| 50S ribosomal protein L16 [Enterococcus faecalis V583] # 1 144 1 144 144 294 100 2e-78 MLVPKRVKHRREFRGKMRGEAKGGKEVAFGEWGLQATESHWITNRQIEAARIAMTRYMKR GGKVWIKIFPHKSYTSKAIGVRMGKGKGAPEGWVSPVKRGKIMFEIAGVPEEVAREALRL ASHKLPVKTKIVKREEMGGESNEG >gi|307679018|gb|GL456779.1| GENE 54 45325 - 45981 1112 218 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374857|ref|NP_814010.1| 30S ribosomal protein S3 [Enterococcus faecalis V583] # 1 218 1 218 218 432 99 1e-120 MGQKVHPIGMRVGIIRDWDAKWYAEKEYAEFLHEDLRIRKFIATKLADAAVSTIEIERAA NRVNISIHTAKPGMVIGKGGSEVENLRKELNKLTGKRVHINIVEIKKPDLDAKLVGEGIA RQLENRVAFRRAQKQAIQRAMRAGAKGIKTQVSGRLNGADIARSEGYSEGTVPLHTLRAD IDYAWEEADTTYGKLGVKVWIYRGEILPTKKNTEKGGK >gi|307679018|gb|GL456779.1| GENE 55 46048 - 46401 564 117 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227519997|ref|ZP_03950046.1| 50S ribosomal protein L22 [Enterococcus faecalis TX0104] # 1 117 1 117 117 221 100 2e-56 MQMSEQITSAKATAKTVRTSPRKARLVIDLIRGKSVADAISILKFTPNKSAGIIEKVLMS AVANAENNFDLDVESLVVSEAFVNEGPTMKRFRPRAKGSASPINKRTSHITVVVTEK >gi|307679018|gb|GL456779.1| GENE 56 46417 - 46695 486 92 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374855|ref|NP_814008.1| 30S ribosomal protein S19 [Enterococcus faecalis V583] # 1 92 1 92 92 191 100 2e-47 MGRSLKKGPFVDDHLMKKVEAQQGAEKKKVIKTWSRRSTIFPSFVGFTIAVYDGRKHVPV YIQEDMVGHKLGEFAPTRTYRGHVADDKKTKR >gi|307679018|gb|GL456779.1| GENE 57 46738 - 47568 1431 276 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374854|ref|NP_814007.1| 50S ribosomal protein L2 [Enterococcus faecalis V583] # 1 276 1 276 276 555 99 1e-157 MAIKKYKPTTNGRRNMTSSDFAEITTSTPEKSLLQPLKNNAGRNNNGRITVRHQGGGHKR QYRVIDFKRNKDNVAAVVKTIEYDPNRSANIALVHYEDGVKAYILAPKGLEVGMRLVSGP EADIKVGNALPLENIPVGTVIHNIEMKPGKGGQLIRSAGTSAQVLGKEGKYVLIRLNSGE VRMILATCRATIGSVGNEQHELINIGKAGRSRWMRKRPTVRGSVMNPNDHPHGGGEGKTP IGRKAPVSPWGQPAIGYKTRNKKAKSDKLIVRRRTK >gi|307679018|gb|GL456779.1| GENE 58 47608 - 47898 471 96 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374853|ref|NP_814006.1| ribosomal protein L23 [Enterococcus faecalis V583] # 1 96 1 96 96 186 100 9e-46 MELLDVIKRPVITEKSMLAMDEKKYTFEVDTRANKTLVKQAVESAFDVKVANVNILNVRP KFKRMGKYAGYTKKRRKAIVTLTEDSKEIQLFEAAE >gi|307679018|gb|GL456779.1| GENE 59 47898 - 48521 1033 207 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227519993|ref|ZP_03950042.1| 50S ribosomal protein L4 [Enterococcus faecalis TX0104] # 1 207 1 207 207 402 100 1e-111 MPNVALFKQDGTQNGEITLNEEIFGIEPNESVVYDAIIMQRASLRQGTHAVKNRSAVRGG GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSDKVAE NNLVAVEGLSFDAPKTKEFKQVLANLSIDTKVLVVLENGNDFAALSARNLPNVSVVTSDN VSVLDVVSANKVLATQTALTQIEEVLA >gi|307679018|gb|GL456779.1| GENE 60 48547 - 49176 1059 209 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374851|ref|NP_814004.1| 50S ribosomal protein L3 [Enterococcus faecalis V583] # 1 209 1 209 209 412 100 1e-114 MTKGILGKKVGMTQIFTESGELIPVTVVEATPNVVLQVKTVETDGYEAIQVGYQDKREVL SNKPAKGHVAKANTAPKRFIKEFKNVELGEYEVGKEIKVDVFQAGDVVDVTGTTKGKGFQ GAIKRHGQSRGPMSHGSRYHRRPGSMGPVAPNRVFKNKRLAGRMGGDRVTIQNLEVVKVD VERNVILIKGNIPGAKKSLITIKSAVKAK >gi|307679018|gb|GL456779.1| GENE 61 49198 - 49542 576 114 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227519991|ref|ZP_03950040.1| 30S ribosomal protein S10 [Enterococcus faecalis TX0104] # 1 114 1 114 114 226 100 6e-58 MSTFKIGEGGNKMAKQKIRIRLKAYEHRILDQSADKIVETAKRTGADVSGPIPLPTERSL YTVIRATHKYKDSREQFEMRTHKRLIDIVNPTPKTVDALMKLDLPSGVNIEIKL >gi|307679018|gb|GL456779.1| GENE 62 49652 - 49786 48 44 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227515486|ref|ZP_03945535.1| ribosomal protein S10 [Lactobacillus fermentum ATCC 14931] # 1 40 14 54 208 23 39 7e-53 RMKRIEKQNKCFSKQEKILSKKRRKSLLTLSFHSIIKKVLFTGV >gi|307679018|gb|GL456779.1| GENE 63 49855 - 51021 1260 388 aa, chain - ## HITS:1 COG:CAC0877 KEGG:ns NR:ns ## COG: CAC0877 COG2230 # Protein_GI_number: 15894164 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cyclopropane fatty acid synthase and related methyltransferases # Organism: Clostridium acetobutylicum # 7 386 8 386 391 402 52.0 1e-112 MLEKETYSQLFKWSFSKKTQVTYWDGTVKEYGQGSGDPVFKIVFNEKIPVKDLLNNASLT LGEAYMDRKIEIEGDIQALIYDVYNQKDSFLHNAKFIKWLPKESHSKKRSQEDIHSHYDL GNDFYKKWLDQTMTYSCAYFKTPEDTLEQAQVNKVHHILDKLFIKEGDTLLDIGCGWGTL ILTAVKEYGAKATGITLSEEQFHHIRHIIEKEGLQDRMTVKLMDYRDLKGESFDHITSVG MFEHVGAENLHEYFDVVQRNLAPKGTALIHGISRQQGGAKNAWINRYIFPGGYIPGVTEL VGHMTENDLQVIDLESLRRDYQLTLEHWTKNFHNIEAEIVDEKGERFYRMWDLYLQACAA SFQASNIDVIQYLLVHPDNNDIPMRRIG >gi|307679018|gb|GL456779.1| GENE 64 51293 - 52117 1039 274 aa, chain - ## HITS:1 COG:lin0667 KEGG:ns NR:ns ## COG: lin0667 COG0351 # Protein_GI_number: 16799742 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Listeria innocua # 1 269 3 271 271 293 54.0 2e-79 MEKVLTIAGSDSTGGAGIQADLKTFEEYGVFGFSSLTSIVTMDPTTGWSHEVTELPETLL EKQLISVFAGGPVAALKTGMMGNEQNIKMASKYIKQEKIQKVVIDPVIACKGTAQILQPK SVEGLKNDLLPLALVATPNLIEAGILSGLGEISSVAEMEEAAKRIVQMGAKHVVVKGGHR LAGEKALDLFYDGHTAHLLENELYPTDYNHGAGCTFSAAITAGLAKGYSVLEAVTLAKKF VAAAIKHGIQVNPYVGHVWHGAYTHAEQRMRKKA >gi|307679018|gb|GL456779.1| GENE 65 52299 - 53486 1486 395 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 395 1 407 407 577 70 1e-163 MAKEKFDRSKSHVNIGTIGHVDHGKTTLTAAIATVLSKHGGGEAQSYDSIDNAPEEKERG ITINTSHIEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHI LLSRNVGVPYIVVFLNKMDMVDDEELLELVEMEVRDLLSEYDFPGDDVPVIAGSALKALE GDESYEEKILELMAAVDEYIPTPERDTDKPFMMPVEDVFSITGRGTVATGRVERGEVRVG DEVEIVGIKDETSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDIERGQVLAKPATI TPHTKFKAEVYVLSKEEGGRHTPFFTNYRPQFYFRTTDVTGVVELPEGTEMVMPGDNVAM DVELIHPIAIEDGTRFSIREGGRTVGSGVVTEIVK >gi|307679018|gb|GL456779.1| GENE 66 53637 - 55718 2282 693 aa, chain - ## HITS:1 COG:SPy0273 KEGG:ns NR:ns ## COG: SPy0273 COG0480 # Protein_GI_number: 15674452 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Streptococcus pyogenes M1 GAS # 1 691 1 691 692 1188 87.0 0 MAREFSLEKTRNIGIMAHVDAGKTTTTERILYYTGKIHKIGETHEGASQMDWMEQEQERG ITITSAATTAQWKGYRVNIIDTPGHVDFTIEVQRSLRVLDGAVTVLDSQSGVEPQTETVW RQATEYKVPRIVFCNKMDKIGADFFYSVESLHDRLQANAHPIQIPIGAEEDFTGIIDLIK MKAEIYTNDLGTDIQETDIPEDYLEKAQEWREKLVEAVAETDEDLMMKYLEGEEITEEEL VAGIRQATINVEFFPVLAGSAFKNKGVQLMLDAVLDYLPSPLDIDAIKGIDTKTDEETTR PADDEAPFASLAFKVMTDPFVGRLTFFRVYSGVLESGSYVLNASKGKKERIGRILQMHAN TRQEIDKVYSGDIAAAVGLKDTTTGDTLCALDAPVILESIEFPDPVIQVAVEPKSKADQD KMGVALQKLAEEDPSFRVETNVETGETVISGMGELHLDVLVDRMKREFKVEANVGAPQVS YRETFRAATKAEGKFVRQSGGKGQYGHVWVEFTPNEEGKGFEFENAIVGGVVPREYIPAV EKGLEDSMNNGVLAGYPLVDIKAKLYDGSYHDVDSNETAFRVAASMALKAAAKNANPVIL EPMMKVTITVPEDYLGDIMGHVTSRRGRVEGMEAHGNSQIVNAMVPLAEMFGYATTLRSA TQGRGTFMMVFDHYEDVPKSVQEEIIKKNGGNA >gi|307679018|gb|GL456779.1| GENE 67 55802 - 56272 806 156 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374845|ref|NP_813998.1| 30S ribosomal protein S7 [Enterococcus faecalis V583] # 1 156 1 156 156 315 100 1e-84 MPRKGPVAKRDVLPDPIYNSKLVTRLINRVMVDGKRGIAANIIYNSFDIIKESTGNDPLE VFEQAMKNVMPVLEVKARRVGGSNYQVPVEVRPERRTTLGLRWVVNYARLRGEHTMEERL AKEIMDAANNTGASVKKREDTHKMADANRAFAHYRW >gi|307679018|gb|GL456779.1| GENE 68 56328 - 56741 698 137 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374844|ref|NP_813997.1| 30S ribosomal protein S12 [Enterococcus faecalis V583] # 1 137 1 137 137 273 99 4e-72 MPTINQLVRKPRKSKVEKSDSPALNKGYNSFKKTQTNVNSPQKRGVCTRVGTMTPKKPNS ALRKYARVRLSNLIEVTAYIPGIGHNLQEHSVVLLRGGRVKDLSGVRYHIVRGALDTAGV NDRKQSRSKYGTKRPKA >gi|307679018|gb|GL456779.1| GENE 69 57086 - 57766 956 226 aa, chain + ## HITS:1 COG:L0045 KEGG:ns NR:ns ## COG: L0045 COG0120 # Protein_GI_number: 15674215 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase # Organism: Lactococcus lactis # 2 222 3 223 224 264 62.0 8e-71 MNLKQMVGIEAAKYVEDGMIVGLGTGSTAKFMVDEIGRRIKEEGLSIVGVTTSKETEKQA LALGIPLKSIDEVPYVDLTIDGADEISADFQGIKGGGAALLFEKIVATYSKKCIWIVDKS KMVDDLGAFPLPVEVVPYGSRQLVHLFEEKGYHPTLRLNAAGETLITDGGHHIIDLHLEK ITDPEALGSYLDNLVGVVEHGLFLNMVSMVIVGYEDGPKTLHVPAR >gi|307679018|gb|GL456779.1| GENE 70 57808 - 58383 535 191 aa, chain + ## HITS:1 COG:STM2772 KEGG:ns NR:ns ## COG: STM2772 COG1961 # Protein_GI_number: 16766084 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Salmonella typhimurium LT2 # 1 178 1 179 190 103 34.0 2e-22 MKRIGYARTTIIEDDLKNQLTTLQSFGCDDIFQETFDPQAEISVLDEVEKLLSAGDTLIV CKLHHLGKTTRQLTDFMKMLKEKQVDFVSISEGIDTHLPTGEAYFQLMESLSAMECALIK ERTLVGLHKARENGKVGGRPKIDGRTVRKIRALYYENKETIQFISNKCGVSVGTCYKYIN LPETDVERLYS >gi|307679018|gb|GL456779.1| GENE 71 58558 - 59244 895 228 aa, chain + ## HITS:1 COG:NMB1604 KEGG:ns NR:ns ## COG: NMB1604 COG0588 # Protein_GI_number: 15677454 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Neisseria meningitidis MC58 # 3 228 2 227 227 333 73.0 1e-91 MPKLVFSRHGLSEWNALNQFTGWADVDLAPEGVEEAKEGGRKIKEAGIEFDVAYTSVLTR AIKTCNYLLEYSDQLWVPQIKSWRLNERHYGKLQGLNKKETAEKYGDEQVHIWRRSYDTL PPLMEATDEGSAANDRRYAMLDQRDIPGGENLKVTLERALPFWQDEIAPALKDKKTVLVA AHGNSLRALAKHIEGISDEDIMDLEIPTGKPLVYELNDDLTVKEKYYL >gi|307679018|gb|GL456779.1| GENE 72 59301 - 60488 1393 395 aa, chain - ## HITS:1 COG:CAC3299 KEGG:ns NR:ns ## COG: CAC3299 COG1979 # Protein_GI_number: 15896543 # Func_class: C Energy production and conversion # Function: Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family # Organism: Clostridium acetobutylicum # 1 386 1 386 389 434 55.0 1e-121 MENFNFYVPTDIRFGKDRLDELPAVLDQFGKNVLLVYGGGSIKRNGLYQQITDLAQKNGH TLIELSGVEPNPRIETVRKGIELCKENQVDVILAVGGGSTIDCSKAIAAGFYSEEDIWTV IAARKGYTGPALPIVTILTLAATGSEMNAGAVISNLETNQKLGFGGPNMIPKVSFLDPTN TFTVPQNQTAAGSADIFSHLIENYFSISTGTDVQDFVSEGLMRTVIKNCPIALENPEDYD ARANLMWASSLALNGLTGRGKQGVWSCHPMEHELSAFYDITHGIGLAILTPRWMNYVLSE QTVGKFAQFARNVWGIVEQEEEVAAKKGIQALYDYFVACGIPMTLPEVGIEADKFEEMAQ QAVDHSAIAEKAYVPLDAADIVAIYKDCLTESQFI >gi|307679018|gb|GL456779.1| GENE 73 60617 - 61621 1062 334 aa, chain - ## HITS:1 COG:SA0604 KEGG:ns NR:ns ## COG: SA0604 COG0609 # Protein_GI_number: 15926326 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Staphylococcus aureus N315 # 10 332 14 337 338 239 41.0 4e-63 MTQKKVSRWVAILIVGIILTACISLTQGELSVSFMDLKALLLGQGSQAKQLLVWDFRLPR IVLAVLAGAALGLSGAILQGITRNPLADTGILGINAGAGLAVILFISFIETTSITMFALP LVALVGGLLAAVGILVIAYHHRLGLTPVRMVLAGVILSTGISALTLLITSKIDTEKYRFV TMWQAGSIWGSNWFFVGALLPWLVIGFFFAMKRHRLLDIFQLGDETAISVGIAVKKERIV SLLLAVMLAASAISVTGGINFLGLLAPHIARKCGFTQQKQVLPLAALFGSLLLLVSDTIG RLLPGNGEMPAGIIVAIIGAPYFLYLLIKTSDSL >gi|307679018|gb|GL456779.1| GENE 74 61618 - 62538 736 306 aa, chain - ## HITS:1 COG:lin2072 KEGG:ns NR:ns ## COG: lin2072 COG0609 # Protein_GI_number: 16801138 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Listeria innocua # 3 301 38 336 341 262 46.0 8e-70 MFGATSVSIQTIIDSFTHFDATNQAHQVIQTVRLPRILGAAFVGASLAVSGALAQGITQN PLADSGLLGINAGAGLGLALVFAFLPQASYWWLLVVSFLGAGVSVALIYYLSNHSIRGAS PMRLTLVGAGISALFLSFSQFLAIQFNLSQELTFWFLGGVSVISWAQLKIVVPIFLGAFA LAILISPSVTILRFGDDATIGLGRNPQRIRLFASITILLLSGLSVALVGSVSFVGLVVPH VMRTVSGENYRRLIPFSALGGALLVLVADLIARMVNPPFETPFGIITALIGIPFFLYLFR KGGQLG >gi|307679018|gb|GL456779.1| GENE 75 62625 - 63425 259 266 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 4 227 2 226 245 104 30 4e-21 MNYLEAEDLTTGYGRQVISEALNCSFEAGTITSIIGPNGCGKSTLLKTLARILPAEKGKV FIKNQELQHFSSKEVAQELAILSQTPENTIDLSVFDLVSFGRYPYQSGWKSVTTEDQEYI QWALELTGLTELARESVAILSGGQRQRVWIAMALVQDTDILILDEPTTYLDPAHQLEILN VLKRINQEHQKTIVMTIHDINLASRFSDRVIAMKEGKIINEGTPQEVITVTGLADVFAIQ AEISYHSQTQRPLVLSYELMEMELDG >gi|307679018|gb|GL456779.1| GENE 76 63662 - 64600 1186 312 aa, chain + ## HITS:1 COG:lin2073 KEGG:ns NR:ns ## COG: lin2073 COG0614 # Protein_GI_number: 16801139 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Listeria innocua # 22 310 19 310 313 97 26.0 2e-20 MKLLKKTVLIGTTLLLGSFLLAACGNTNKEANNADKTHEVTDTLGNKVTVPAKPKRIIAS YLEDYLVALGEKPVAQWTVGQGRIQDYLAKELKDVPTISYDLPYEAVLKFEPDLLLISSS ALVEGGKYKEYSKIAPTYVVKNGENVTWRDQLEDIATVLDKKEQAKKVLEDYDTLTKGVQ EDLGKKDAGKSAAVLWVTNNQVFMVSDNRSSGTVLYQDLGLQVPKLVEEISKNATADWNQ VSLEKLAELDADHIFLVNSDESAPLFQEAIWKNLPAVKNNQVHTYDKKSSWLYNGPIANT QIVEDVKKVLLN >gi|307679018|gb|GL456779.1| GENE 77 64639 - 65346 1018 235 aa, chain - ## HITS:1 COG:L156559 KEGG:ns NR:ns ## COG: L156559 COG0813 # Protein_GI_number: 15672913 # Func_class: F Nucleotide transport and metabolism # Function: Purine-nucleoside phosphorylase # Organism: Lactococcus lactis # 4 234 5 233 234 312 67.0 4e-85 MSVHIEAKPGEIADKILLPGDPLRAKYIAETFLENPVCYNQVRGMLGYTGTYKGQRVSVQ GTGMGMPSAGIYAHELINSYNVKKLIRVGTCGSISEKVNVRELVIAQAAATPSSAIRNDF PKYDFPQIASFDLLLKSYEIAKAKGFTTHVGNVLSDDVFYKDSLDDVFRLGRYGVLAIEM EAAMLYYLAAKFDVEALAIMTVSDSLVTGEETTAEERQTTFNEMIEVGLETAIAN >gi|307679018|gb|GL456779.1| GENE 78 65364 - 66182 1288 272 aa, chain - ## HITS:1 COG:SPy0892 KEGG:ns NR:ns ## COG: SPy0892 COG0005 # Protein_GI_number: 15674917 # Func_class: F Nucleotide transport and metabolism # Function: Purine nucleoside phosphorylase # Organism: Streptococcus pyogenes M1 GAS # 3 272 2 269 269 341 64.0 7e-94 MTTLTNHLNETTEFLKEKGVQQADFGLILGSGLGELANEITDAIAIPFSEIPHFSVSTVV GHAGQLVYGTLSGKKVLAMQGRFHYYEGHSMQTVTYPVRVMAALGIHSMIVTNAAGGVNE TYTPGNLMLINDHINFTGDNPLIGENDEEIGPRFPDMSHAYTQEYREVAKKVAAEQNIDL KEGVYMGFSGPTYETPAEIRMSRTMGADAVGMSTVSEVIVAVHSGMKVLGISCITNLAAG MQSSLNHAEVVETTERVKGQFKELVKATLAAL >gi|307679018|gb|GL456779.1| GENE 79 66199 - 67365 1407 388 aa, chain - ## HITS:1 COG:SA0134 KEGG:ns NR:ns ## COG: SA0134 COG1015 # Protein_GI_number: 15925843 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphopentomutase # Organism: Staphylococcus aureus N315 # 2 388 5 392 392 545 69.0 1e-155 MFKRVHLIVLDSVGIGEAPDAEKFGDVGSDTLGHIAKEAGLTIPHLEKLGLGTIAPLTGV KAVADHDGYATKLEEISVGKDTMTGHWEIMGLNIKKPFRVFPNGFPEELLKQIEDFSGRK VVCNKPYSGTAVIDDYGEHQMKTGDLIVYTSADPVLQIAAHEDIIPLEELYKICQYVRDI TKDEPYMIGRIIARPYVGEPGNFTRTSNRHDYALDPFGHTVLDSLKENGNDVIAVGKIND IFNGQGITEAIRTKSNMDGVDQLLTVMNKDFTGLSFTNLVDFDALYGHRRDVKGYAKAIE DFDGRLPEIMAAMAEDDLLLITADHGNDPTFPGTDHTREYVPLLAYSKKMTKQGSLPQGF YSDISATIAENFEVPATENGQSFLNQLQ >gi|307679018|gb|GL456779.1| GENE 80 67671 - 67937 218 88 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|255971690|ref|ZP_05422276.1| ## NR: gi|255971690|ref|ZP_05422276.1| predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis X98] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis X98] # 1 88 14 101 101 112 98.0 8e-24 MDEMIQRLLKELARSADKANVRSVGVAMQQRVAQEKNQANQRHRKLVVEAATSFGTRQQQ LGTALKGQFGNKVKEAFQRQTISLKQFL >gi|307679018|gb|GL456779.1| GENE 81 67942 - 68256 329 104 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229546984|ref|ZP_04435709.1| ## NR: gi|229546984|ref|ZP_04435709.1| conserved hypothetical protein [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis X98] hypothetical protein HMPREF9504_01703 [Enterococcus faecalis TX0102] conserved hypothetical protein [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis X98] hypothetical protein HMPREF9504_01703 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9497_01975 [Enterococcus faecalis TX4244] hypothetical protein HMPREF9502_01061 [Enterococcus faecalis TX0031] hypothetical protein HMPREF9503_01153 [Enterococcus faecalis TX0043] hypothetical protein HMPREF9508_01639 [Enterococcus faecalis TX0312] hypothetical protein EF62_0557 [Enterococcus faecalis 62] hypothetical protein OG1RF_10131 [Enterococcus faecalis OG1RF] # 1 104 1 104 104 115 100.0 8e-25 MTLDELQANYRRERQGLEEQSDDLRRAQSHGEQMVMEAEQRLRSALNSLALDGEPLHRAK RDYSTIIEQFQETIQLEQRKINHKIEDLEQTYRSEYQKRSNEKR >gi|307679018|gb|GL456779.1| GENE 82 68266 - 69507 1408 413 aa, chain - ## HITS:1 COG:no KEGG:gbs1967 NR:ns ## KEGG: gbs1967 # Name: not_defined # Def: hypothetical protein # Organism: S.agalactiae_NEM316 # Pathway: not_defined # 3 413 2 398 402 179 30.0 3e-43 MSITDKSYNKISGAVYWLDPKDKKYSPTIKENVIHSLGGTEFQILKIQENSQTDGMQAMA VAPLDKQGVPDLSQIVISYAGTNPGDWKDVETDLRTIGGFWDKTASPGFSDARSPQRLAG QLSSAVAFAEAVKQEYSEATFSTTGHSLGEYLALYIAAENQWKNVGFNGPDPYEVLTPAA KKWVAENPGWLTNYRNQADIVGNLMGNGTGAEIKVALQMGLQNPLKSHDLANWLFDADGY LVIPDNEHNLEASLQGQERKSMTVFASELANLQILKKKLLKNGSGLSSSQQIYLEDAQAR AVVQIAARNAKYAMERVICIHQEAIRTLEQNWEAGLRAARNSVQMLTEAEIMEALASVGV TKQSQVFQPKETHELRIQQAKEKSATFDALEREITAKLAEIVARDSELANQFR >gi|307679018|gb|GL456779.1| GENE 83 69504 - 69830 216 108 aa, chain - ## HITS:1 COG:no KEGG:SZO_10380 NR:ns ## KEGG: SZO_10380 # Name: not_defined # Def: hypothetical protein # Organism: S.equi_zooepidemicus # Pathway: not_defined # 9 106 27 124 126 78 45.0 8e-14 MALEGKYLWTKGGGLAVEKQSVKVLKNTFADIAEVEIERTGFNTMTGSYRIVVTLKNTTG STAYFDYGFVKNSNEIDDYGVVDREVQKKGITKNVVRVTFSNGQEEPI >gi|307679018|gb|GL456779.1| GENE 84 69934 - 70137 233 67 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|327533983|gb|AEA92817.1| ## NR: gi|327533983|gb|AEA92817.1| lipase [Enterococcus faecalis OG1RF] # 1 60 1 60 412 127 100.0 4e-28 MITDQDYNQLSDRVYWLDPKHKRYTPSIKEGRIRKFGNLKFQILKIQENSQTDGMQAMAV VSNINIR >gi|307679018|gb|GL456779.1| GENE 85 70137 - 70535 485 132 aa, chain - ## HITS:1 COG:no KEGG:SZO_10380 NR:ns ## KEGG: SZO_10380 # Name: not_defined # Def: hypothetical protein # Organism: S.equi_zooepidemicus # Pathway: not_defined # 7 130 5 124 126 102 51.0 5e-21 MNKNGIRVGILLVLGIILIGIGGKVFMDKRAEQKEQDLLAVEKQSVKVLKNTFADIKEVK FHEAGKNEMTGSYGMYVTMFNKNNDSVKFDYGFWKERNELGDYGVEDEAVQKEGVTTTSV KVTYTNGKEELI >gi|307679018|gb|GL456779.1| GENE 86 70741 - 71694 1305 317 aa, chain - ## HITS:1 COG:SPy1225 KEGG:ns NR:ns ## COG: SPy1225 COG1079 # Protein_GI_number: 15675189 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 1 317 1 318 318 395 68.0 1e-110 MDLATISSIITQTLVYATPLILTALGGTFSERSGVVNVGLEGIMVMGAFSSVVFNLTFAD TFGAATPWIACLVGGVVGIVFSLLHAVATINLRADHIISGTVINLMAPALGVFLVKVIYQ KGQTDMITQSFGYFSFPGLSKIPVIGELFFAKTSLPAFVAILIAILAWFVIYKTRFGLRL RSVGEHPQAADTLGINVYLMRYSGVLLSGFLGGMGGAVFAQSIAGRFGITTIAGQGFISM AAMIFGKWNPLGAMGAALFFGFAQNLSIAGENLPIISEIPKVYLQAAPYVLTILVLVVFF GKSSGPKANGKNYVKTK >gi|307679018|gb|GL456779.1| GENE 87 71694 - 72827 1226 377 aa, chain - ## HITS:1 COG:SP0847 KEGG:ns NR:ns ## COG: SP0847 COG4603 # Protein_GI_number: 15900734 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 5 349 2 345 352 342 58.0 9e-94 MNNRSEKIRNILVPVLSVIMGFLLGAIIMVIFGYDPVAGYQAMFETAFQGKKSIGEIFVT AAPLIFTALGFSVANSAGFFNIGLSGQALCGWVASIWVALSMPDAPRMIALPVAIIVGAV AGALAAAIPGFLRAYFGTSEVIVTIMLNYILLYTGNHIANNVMKPSIMANKGITKMIGAN ASLRSPFLTSISDGSRLNIGIFLAFIFLILVWFLMKKTTLGFEIRSVGLNPFASEYAGMS SKRTIILSMMISGTLAGLGGAVQGLGTFQNFFIQNTSLSIGFDGMAVSLLGAGSSIGILL SALLFGMLKLGGQGMPLIAGVPTELVDVVIAAIIFFVGISYLIRFLLAKASGSKKEVAIV ETIEAAPDKNNQEGGDI >gi|307679018|gb|GL456779.1| GENE 88 72820 - 74388 2190 522 aa, chain - ## HITS:1 COG:SP0846 KEGG:ns NR:ns ## COG: SP0846 COG3845 # Protein_GI_number: 15900733 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport systems, ATPase components # Organism: Streptococcus pneumoniae TIGR4 # 5 512 4 511 511 673 71.0 0 MSQEENVIEMRKITKEFGTFKANDQIDLQVKPGEIHALLGENGAGKSTLMNILSGLLEPT SGEIYMNGEKVNITSPTAANRLGIGMVHQHFMLVEAFTVTENIILGSEPTHGGILDRKKA KKEIEEVSKQYGLDVNPNAYIRDISVGMQQRVEILKTLYRGANVLIFDEPTAVLTPQEID ELMIILKELTDEGKSIILITHKLDEIKKVADRCTVIRRGQSIGTVNVKDVSSQQLADMMV GRSVSFKTEKKPAQPKETILSIKDLVVKESRGLDAVKNLSLDVRAGEVVGIAGIDGNGQT ELIQALAGLTKVENGSIHLNEKEITNRKPREITEMGVAHVPEDRHKYGLVLEMTLAENIG LQTYYQKPYSSTGILNYRMINKHARELIEEYDVRTPNELVPARALSGGNQQKAIIAREVD RDPDLLIVSQPTRGLDVGAIEYIHRRLIEQRDKNKAVLLVSFELDEILNVSDRIAVIHAG EIVGIVDPKETTENELGLLMAGYSLEEARAELSKVEAGETVE >gi|307679018|gb|GL456779.1| GENE 89 74594 - 75679 1567 361 aa, chain - ## HITS:1 COG:SP0845 KEGG:ns NR:ns ## COG: SP0845 COG1744 # Protein_GI_number: 15900732 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Streptococcus pneumoniae TIGR4 # 39 359 35 350 350 297 58.0 3e-80 MKKAKLFGFSLIALGLSVSLAACGGGKGKTAESGGGKGDAAHSAVIITDTGGVDDKSFNQ SSWEGLQAWGKEHDLPEGSKGYAYIQSNDAADYTTNIDQAVSSKFNTIFGIGYLLKDAIS SAADANPDTNFVLIDDQIDGKKNVVSATFRDNEAAYLAGVAAANETKTNKVGFVGGEEGV VIDRFQAGFEKGVADAAKELGKEITVDTKYAASFADPAKGKALAAAMYQNGVDIIFHASG ATGQGVFQEAKDLNESGSGDKVWVIGVDRDQDADGKYKTKDGKEDNFTLTSTLKGVGTAV QDIANRALEDKFPGGEHLVYGLKDGGVDLTDGYLNDKTKEAVKTAKDKVISGDVKVPEKP E >gi|307679018|gb|GL456779.1| GENE 90 75733 - 76806 1545 357 aa, chain - ## HITS:1 COG:SPy1228 KEGG:ns NR:ns ## COG: SPy1228 COG1744 # Protein_GI_number: 15675192 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Streptococcus pyogenes M1 GAS # 5 356 4 350 350 292 54.0 6e-79 MKQAKFLGLGLAAVALTIGLAACGGNSKKNANTKGDPQHSVVMVTDTAGIDDKSFNQSAW EGMQEWGKEHKLPEGPQGYAYIQSNEASDYTSNIDQAISSQFKTIFGIGYLLKNAVVDAA DANPETNFVLIDDTVNGKNNVASATFRDNESAYLAGVAAANTTKTNKVGFIGGVEGPVIG RFQAGFEKGVADAGKKLGKDIQITSTYAGTFADASKGRALASSMYQAGADIIYHAAATTG QGIFQEAKALNETGSKDKVWVIGVDRDQNEDGKYTTKDGKDDNLTLASTIKGVNIAVKKI SDLALEDKFPGGEHLTYGLKDGGVDLTTEALSDQAKTAVKEAKEQIISGDVKVPDQP >gi|307679018|gb|GL456779.1| GENE 91 76902 - 77297 488 131 aa, chain - ## HITS:1 COG:SP0844 KEGG:ns NR:ns ## COG: SP0844 COG0295 # Protein_GI_number: 15900731 # Func_class: F Nucleotide transport and metabolism # Function: Cytidine deaminase # Organism: Streptococcus pneumoniae TIGR4 # 6 128 5 127 129 171 67.0 4e-43 MTVKQEWLDCAVEALAHAYVPYSNFPVGACLVTADGKMYQGVNIENASFGLTNCAERTAI FKAISEDERTFQHLVVAGNTEAPISPCGACRQVMAEFFDPQMPVTLVGKDGATKTMTVEA LLPYSFTDKDF >gi|307679018|gb|GL456779.1| GENE 92 77335 - 77997 974 220 aa, chain - ## HITS:1 COG:L63310 KEGG:ns NR:ns ## COG: L63310 COG0274 # Protein_GI_number: 15673422 # Func_class: F Nucleotide transport and metabolism # Function: Deoxyribose-phosphate aldolase # Organism: Lactococcus lactis # 1 216 1 215 220 282 68.0 4e-76 MELNRMIDHTILKPEATEAAVQKIIDEAKEYNFFSVCINPCWVAFASEQLADTDVAVCTV IGFPLGANTPEVKAYEAADAIKNGANEVDMVINIGALKSQQYDYVRQDIQGVVDAAKGKA LVKVIIETALLTDEEKVKACELAKEAGADFVKTSTGFSTGGAKVADIRLMRETVGPDMGV KASGGVHNAEEALAMIEAGATRIGASTGVAIVSGATGEGY >gi|307679018|gb|GL456779.1| GENE 93 78025 - 79326 1851 433 aa, chain - ## HITS:1 COG:lin2101 KEGG:ns NR:ns ## COG: lin2101 COG0213 # Protein_GI_number: 16801167 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine phosphorylase # Organism: Listeria innocua # 1 433 1 433 433 541 69.0 1e-154 MRMVDIIEKKRDGHQLTSEEIQFIINGYTDGSIPDYQVSAFLMAVFYQDMTDEEITQMTL AMVHSGEIVDLSSIEGIKVDKHSTGGVGDTTTLILAPLVASVGVNVAKMSGRGLGYTGGT LDKLEAIPGFKVELTEERFIQLVNDTKVAVIGQSGDLAPADKKLYALRDVTATVDSIPLI ASSIMSKKIAAGADAIVLDVTTGEGAFMKDLASARRLAETMVRIGKLANRQTMAVISDMS QPLGEAIGNSLEIVEAIETLQGNGPEDLVEMCYVLGSQMVVLAKKAETLDEARALLEEAL TSGRALAKFKEMIENQGGDSSVVDQPEKLLTATYQFDLPAKETGVVQKIVANEIGVAAML LGAGRATKEDTIDFAVGLKLHKKVGSPVEKGESLLTIYANREDVTEVEQLLYKNIEIGPT GEEPILIHDIITE >gi|307679018|gb|GL456779.1| GENE 94 79467 - 80474 993 335 aa, chain - ## HITS:1 COG:lin2102 KEGG:ns NR:ns ## COG: lin2102 COG1609 # Protein_GI_number: 16801168 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 335 1 333 336 321 47.0 1e-87 MKLTIKEIADMAGVSVTTVSQILNNKGSRFSEKTRNKVLAVVAENHYKPDYFASNVINRH SKTIGMIVPDVTDFFFSKVIEGVETYLNSLGYMILLCNSKHDSEQAMQYVSELIHRSVDG IIFATPNVLPENHILKDRREHPIPVILVDRGINPRDSGRLIVKEYEGAYQAVHHLIQQGH QHIGMLRESAGYYRLTERVTAYQHALQDNNLPFRPHYVCAGELNLHGGYAAAKEVLKNEE ITAIFCGNDEMAMGAYQAIEEAGKKIPDDISVVGFDGLEISEYLVPSLTTVYQPSFDIGY YAAKFLVEAIADPTGKVPNKVFDATFIARKSTKPI >gi|307679018|gb|GL456779.1| GENE 95 80634 - 81647 948 337 aa, chain + ## HITS:1 COG:L87453 KEGG:ns NR:ns ## COG: L87453 COG1816 # Protein_GI_number: 15672269 # Func_class: F Nucleotide transport and metabolism # Function: Adenosine deaminase # Organism: Lactococcus lactis # 6 335 15 347 352 289 43.0 6e-78 MEESRVRQLPKIELHCHLDGSIRPTTLRTIAEKQNIPLPQDEQALKELVVAPEKCTDLND YLTRFDFVLTCLQTAEALQAAAYDVISQAAEDGVAYIEVRFAPSQHTEKGLRLPEIVTAV LTGLKQGEEDFGVKSNALLCGMRHDQQQAIEKIVHLAHDFRETGVVGFDLAGNEVDFPPY TFEDVLALANQLSIPLTLHAGECGCGKNVADAVTLGATRIGHGIALKDTPEYLALLKEKK VLLEMCPTSNFQTGTVKTLAEYPFQQFIEAGLAVCINTDNRTVSDTTLTKEFMKLATWYQ LSYDEMKQLTKNALAGAFLSPDEKKLLNQKIDQAYLF >gi|307679018|gb|GL456779.1| GENE 96 81680 - 82288 813 202 aa, chain - ## HITS:1 COG:lin0284 KEGG:ns NR:ns ## COG: lin0284 COG2813 # Protein_GI_number: 16799361 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S RNA G1207 methylase RsmC # Organism: Listeria innocua # 3 199 4 200 201 229 57.0 2e-60 MANHYYTENPELAHDLESWSFPLRGRTFQFTTDSGVFSRGTVDYGSRVLIDAFEWENLPA GRLLDVGCGYGPIGLSLAAATGRLVEMVDVNQRAVGLAQMNAQRNQITTVDIHSSNVYET LNETTYAAIVSNPPIRAGKKVVHGILTGAFPLLKVGGTLTVVIQKKQGAPSAEKKMAEVF GNVEIVTKDKGYYILRSVKEAE >gi|307679018|gb|GL456779.1| GENE 97 82303 - 82890 737 195 aa, chain - ## HITS:1 COG:L161059 KEGG:ns NR:ns ## COG: L161059 COG2755 # Protein_GI_number: 15673705 # Func_class: E Amino acid transport and metabolism # Function: Lysophospholipase L1 and related esterases # Organism: Lactococcus lactis # 3 191 8 189 191 103 40.0 2e-22 MRKIVLFGDSITAGYLDEAVSPVLVDLVKRDIAAMGLEEVAVINAGMPGDTTEDGLKRLN KEVLIEKPDEVVIFFGANDASLDRNITVATFRENLETMIHEIGSEKVILITPPYADSGRR PERPQTRIKELVKVAQEVGAAHNLPVIDLYKAMTVYPGTDEFLQADGLHFSQVGYELLGA LIVREIKGRLKPKQA >gi|307679018|gb|GL456779.1| GENE 98 83045 - 83968 958 307 aa, chain + ## HITS:1 COG:L66222 KEGG:ns NR:ns ## COG: L66222 COG1072 # Protein_GI_number: 15673426 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate kinase # Organism: Lactococcus lactis # 1 307 1 306 306 347 56.0 1e-95 MDDKMNYYPISREEWHGFYHDGKAPLTEAELDNIKSVNDQISLKDVQEIYVPLTHLIHLY MKEFESLTLSKGLFLHEYVSVPPFIIGIAGSVAVGKSTTARLLQRILARTFKRRNVQLIT TDGFLYPNKVLEEQGIMDRKGFPESYDMEKLINFLNEVKSGKDEIKAPVYSHSVYDVIEG EYELIQQPDILIVEGINTLQLPANQQIYVSDFFDFSIFVDADPALIEKWYLERFGALLDT AFLDPNNYYYQYAIGKREDAFAMARNVWKTVNLPNLEEYILPTRGRADIILHKTENHLID QIYLRKY >gi|307679018|gb|GL456779.1| GENE 99 84280 - 85842 1782 520 aa, chain + ## HITS:1 COG:SP1445_2 KEGG:ns NR:ns ## COG: SP1445_2 COG0519 # Protein_GI_number: 15901295 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase, PP-ATPase domain/subunit # Organism: Streptococcus pneumoniae TIGR4 # 202 520 1 316 316 567 87.0 1e-161 MTNVADLTSVEKIIVLDFGSQFNQLITRRIREFGVFSELLSHRTTAEEIRKIAPKGIIFS GGPNSVYDKDAFSIDPEIYELGIPILGICYGMQLMTHNLGGKVEPAANREYGKAELEILG DATLFQGTPAKQTVWMSHGDLVTEIAPGFEKVGTSNDCPIASIEDANRKFYGVQFHPEVR HSEYGNDLLRHFAFDVCGCTGDWSMENFIDMEVAKIREQVGDKKVLLGLSGGVDSSVVGV LLQKAIGDQLTCIFVDHGLLRKGEAEQVMESLGGKFGLNIIKVDAKERFLSKLAGVSDPE QKRKIIGNEFVYVFDDEATKLAGEEGVSFLAQGTLYTDVIESGTETAQTIKSHHNVGGLP EDMQFELIEPLNTLFKDEVRALGTELGMPDAIVWRQPFPGPGLGIRVLGEITEDKLQIVR DSDAILREEIAAAGLDRDIWQYFTVLPGIRSVGVMGDGRTYDYTVGIRAVTSIDGMTADF ARIPWDVLQKISVRIVNEVAHVNRIVYDITSKPPATVEWE >gi|307679018|gb|GL456779.1| GENE 100 86057 - 86371 178 104 aa, chain - ## HITS:1 COG:SP1582 KEGG:ns NR:ns ## COG: SP1582 COG3464 # Protein_GI_number: 15901424 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pneumoniae TIGR4 # 3 95 280 402 418 75 40.0 2e-14 MDSLNRRRRPSFKTYLTETELVDRLLSCSVELTQRYTLYQDFLYAVHKRNQTYFDALNYP YSNGQLECLNNHIKVLKRNAYGFRNFYNFKLRIFVQQGQAIQTK >gi|307679018|gb|GL456779.1| GENE 101 86414 - 86893 326 159 aa, chain - ## HITS:1 COG:FN0599 KEGG:ns NR:ns ## COG: FN0599 COG3464 # Protein_GI_number: 19703934 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 22 150 149 274 428 108 42.0 3e-24 MSYTELIKETLNILDLNVIFEENCLRKEKINGQIKTTFPTVLHFDEFKSVRQVSGAMSFI ILNGQTRKLFDIVENRQLSYLERYFNRFPLSVRENVQFIVIDIYTPYVFLVKKCFPKAKL IIDRFHIVQHIGRIFRNHRITWTNYLLKSSSLAEKRQGK >gi|307679018|gb|GL456779.1| GENE 102 87215 - 89143 716 642 aa, chain - ## HITS:1 COG:no KEGG:BT_2330 NR:ns ## KEGG: BT_2330 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 1 628 292 891 905 181 28.0 1e-43 MYRDFHEKEWVPVFLDGEKISDIPVLKKIEQLIKKEFSRQYEGNMYEHFLQFDISKKILL LDNWDRVDLNKIGKKELVKIFTKFFSTIIIVAESIPNNTSDILGLNDELESRIKFIEIKK FGFKKREELVDKWIRFGNEYVKEEKDIIFDIDKYTKQIDEVIGKSYVPQVPLYILIILQS IDSGRDLSDFNSQSNGYYYELLIKQLINDVDINNNEMALLHNYLSYFGYKVFSNNEKSLS YSEWHDFHENYLEKYELDSQTMSFEYYKKRLIKSRIIKEFSEGRYTFTYNYALYFFVAQY LSNNISEDLIKNIIVDLIQKINVEINANVLIFLTHLSKDEFILNTVVEVSNKLLADFPEL RMEDDIIELNQLMTELPTLVFENTNVSDNRSNYNRVRDSNDNEEKHFIETAENGKSEISE ETDTESSLTEKNEILVEMDKAQKISEVIGQILKNYSGSIIKETKRDLLESAYSVTLRAGS NLINIVKSEKDELVYFISEKIVEDGVIEPSNQREVEAAAKRILFKFVEMICFSIIHKSIK DTGSSSLKITYKNLITTDLSMIKKLIISGSYLETMYIDPSTSYIHEVFQETEKNLMSRSI LQQMAAKYMYLFELSPQERQKIASRFEIRYDPIVKARLDHKR >gi|307679018|gb|GL456779.1| GENE 103 89238 - 90086 350 282 aa, chain - ## HITS:1 COG:no KEGG:BT_2330 NR:ns ## KEGG: BT_2330 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 75 278 58 254 905 80 31.0 7e-14 MDSVIRETILERIKDNEDKRENLIQKITLQDHYDDYFSKFMEFWESSELISDFPIFKVVN FSINEDQKIKINLINTAWDSTLHENAGTKYMPMTELQGLEYDNDALFNFSIIHHPTHWLE PNNKREFDHLLENVSDFIFTGHEHQESQISKISPLGETIILEGNVLQENSDPKISGFNII TIEIENSIVVNIDLEQFAWDSQQNMYIVNDFEEIKIDTMRRRINHASTGENNRFFIKESM SKFINDLGAYVVHPRHGNLLLNDIFVYPDFENSLEEKKISKI >gi|307679018|gb|GL456779.1| GENE 104 90074 - 90355 187 93 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|257421458|ref|ZP_05598448.1| ## NR: gi|257421458|ref|ZP_05598448.1| predicted protein [Enterococcus faecalis X98] predicted protein [Enterococcus faecalis X98] hypothetical protein HMPREF9503_01130 [Enterococcus faecalis TX0043] hypothetical protein HMPREF9508_01662 [Enterococcus faecalis TX0312] hypothetical protein EF62_0511 [Enterococcus faecalis 62] # 1 93 1 93 93 150 100.0 2e-35 MKLSIVNFSDVHFMAGNNSILEKKQQLIKAIASRINSSEKKLFLMNGDSAFSGKQEEYDV AFDFFRMLFLNLKELIFYVFRVIMIAILVLWIQ >gi|307679018|gb|GL456779.1| GENE 105 90761 - 90883 112 40 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKLEQEIVNRIRELRTSKNMTQEQLADKIGFAVSYLGRIE >gi|307679018|gb|GL456779.1| GENE 106 91041 - 91145 62 34 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKRKKLVTLLYLSLAMFASFVQPKQRRAFLHGKH >gi|307679018|gb|GL456779.1| GENE 107 91446 - 91841 271 131 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|255971665|ref|ZP_05422251.1| ## NR: gi|255971665|ref|ZP_05422251.1| predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis X98] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis X98] # 1 131 40 170 170 219 100.0 8e-56 MIEKDKQYTDFAEEISGYILNEYNVKSVIVNNNTTISFDYKKVELVDTFNMKIYVDNVYY KTIKKGESYQPATKNLGLDENEFDLSNSVTDQPKNWIDGQTYNYDFYVSHYELLSNAEKI KAINTILSILI >gi|307679018|gb|GL456779.1| GENE 108 91845 - 92300 355 151 aa, chain - ## HITS:1 COG:CAC3531 KEGG:ns NR:ns ## COG: CAC3531 COG1943 # Protein_GI_number: 15896768 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Clostridium acetobutylicum # 4 149 2 147 157 199 64.0 2e-51 MSNDDKSLAHTRWNCKYHLVFTPKYRRKVIYGQLRRDIGKILRKLCEMKEVEIVEAHAMP DHIHMLVRIPPKLSVSGFMGFLKGRSAVVIHERHANLKYNYGNRYFWSKGYYVSAVGLNK KTIAKYIRGQEAEDRVRDSINKRKYKDPFRK >gi|307679018|gb|GL456779.1| GENE 109 92802 - 94070 844 422 aa, chain + ## HITS:1 COG:TM1325 KEGG:ns NR:ns ## COG: TM1325 COG0641 # Protein_GI_number: 15644078 # Func_class: R General function prediction only # Function: Arylsulfatase regulator (Fe-S oxidoreductase) # Organism: Thermotoga maritima # 1 414 1 435 454 189 30.0 9e-48 MKLSTFNIEKEIPDGIIVYNTFSSGVLFLNNEYKNEYLNLKKGKKCNKKDLEKELTKGSM LVSDEVDEVSQLKVLNNATRFNTQGISFTIAPTMKCNFACPYCFEEGVRYNTMTQTIENE TIEFIKNFYIQNTPFGICWYGGEPLLGIKNIERITNKLFENESLKESYQADIITNGFYLS RKNAELLASLGVKTAQITLDGPPDIHDTRRVPRNGKKTFNTILENIKNSYDLLEIVIRVN VDRTNISRVHEILDILEEEGLRNKLGFYIAAVDDSASQKPNPQCFSDKEFSEEEFNFYIE ALKRGFNLINIPGQNLGICGAISLNNYVIDPLGDLYKCWNEIGRKEKAVGNVVEGPLYNN VMVEYLNYEAITDKKCMECKVLPACMGGCPYITINSERKCNSIRYNAEKLIELVYSNQMV DG >gi|307679018|gb|GL456779.1| GENE 110 94070 - 95704 493 544 aa, chain + ## HITS:1 COG:SA1683 KEGG:ns NR:ns ## COG: SA1683 COG1132 # Protein_GI_number: 15927440 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Staphylococcus aureus N315 # 26 531 16 535 578 181 26.0 4e-45 MKKEISLVFKYILELDLSKWEFSSLLFATIMANLINLTQPFFLGKVIDGVTTFSNLAIVN NLLFMATFFVFSMFFLYIKNKKTIEIVSKIEIDMKKKIFNSIFKMSYKDFLINNDGKLLN LIEEDAMVFSNILSTLLSMIIDILSFFITIGIMLFLNSTLSIIFILIFPITSFIYYFTGK KLRKKQLELKNEHDDYISFITESLNNFKLLKIFNKETDRGNHFTSKIRNIYDIGITKILI ETKSEILLQIVLFINNMVVLILGIYMIFMGTFTLGSLISFNSYSEKFKQSALSLTKINSS IQNMLVSLERIHNITTNGKYHFKVVEENYIKTENIHTVLINNLNYYVDSKHILKNLNFEF RSGSINLVSGESGSGKTTLFNILTKLITSYSGQIFFDTVNIQNIPNKEYRKIICYVTQES LIFSETISNNLKLYNKNITQEEIIDICKKLNLHEFISKLENGYDTYIYKGGETISGGQAQ RLCIARAALTNPDIFIFDEIISSLDAYNAKLITNFVEELSKEKIVVISSHQKLNVKSSYS ILKL >gi|307679018|gb|GL456779.1| GENE 111 95731 - 95823 111 30 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNKILKILLIIFVILIVVIFLPTIIFFIIK >gi|307679018|gb|GL456779.1| GENE 112 96815 - 97111 134 98 aa, chain + ## HITS:1 COG:no KEGG:EF0124 NR:ns ## KEGG: EF0124 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 94 26 119 119 101 94.0 1e-20 MSKETFLKYGFVVLFIGIFLLRAQKVISEPLSYLFSGILLLIVAYLILVKKMNFFSSLLT VTDQPSSTQQRLGQLSGLVSLLIGLLLVILSFIFFLQL >gi|307679018|gb|GL456779.1| GENE 113 97262 - 97807 654 181 aa, chain + ## HITS:1 COG:no KEGG:EF0120 NR:ns ## KEGG: EF0120 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 4 181 1 178 178 343 99.0 1e-93 MEKMYRSPYEAYPYLSSKPEDLRCDFELMTDELASMTGLLRGYVQQLDVPEQPALTEELA KICELIYHVNPTTRTKLTVTEEEIAWLLERVNAMNELTYEENRPFVLPMGTICSSYAHIL RAKAKDIVRLLYRMDYGGKKIDPQLYDVVNLLSGYFFMLALYLNQLENGEEVPFVSRNYS I >gi|307679018|gb|GL456779.1| GENE 114 97855 - 98643 910 262 aa, chain - ## HITS:1 COG:PA3578 KEGG:ns NR:ns ## COG: PA3578 COG0384 # Protein_GI_number: 15598774 # Func_class: R General function prediction only # Function: Predicted epimerase, PhzC/PhzF homolog # Organism: Pseudomonas aeruginosa # 1 260 1 260 261 236 49.0 3e-62 MSYPYYIVDAFAEEVFKGNPAAVYVLEKWLPEAVMQNIAIENNLSETAFTVKEGQSYALR WFTPEREIDLCGHATLATAFVLFNYYSVAEETLHFTSQSGPLAVTKKEEYYYLDFPYILP ERIPILPEYEAALGTKIYEAYLGRDLFFVLKDEETVAKITPDFSALKALDLGVGVIVTAS GDSVDFVSRTFFPKLRINEDPVCGSAHANLIPYWGKRLNQTTLSAYQVSPRGGFLTCEVK ENRVIIGGTAKLFAKGEAYLPV >gi|307679018|gb|GL456779.1| GENE 115 98645 - 99610 939 321 aa, chain - ## HITS:1 COG:MTH1495 KEGG:ns NR:ns ## COG: MTH1495 COG2423 # Protein_GI_number: 15679492 # Func_class: E Amino acid transport and metabolism # Function: Predicted ornithine cyclodeaminase, mu-crystallin homolog # Organism: Methanothermobacter thermautotrophicus # 55 320 65 330 339 160 33.0 4e-39 MDIISYERVIQQLSFSEAIQVMKRCFAELQKGKISQSERHVEVLPDGENQNLFALMPAYL GKNRFFGAKIITAFPENPQKNLASHLGQILLFDSSTGRPVAMMDANAITWLRTAAVSALA TDYLAAPNAKSIALIGAGQQASSHLAALQSVRAIEKVFIYDRTAERARKLIAKQQHNYPE CTFIGCSSVQEAVQEAEIICTLTSSQDAFLEEKDVLPNAHINAIGTFTPTSRELTSDLVK NSQVFVDEYAAALKESGDLLIPISEGAFSAEKIVGSLGELVTGKVKLKAEQKGRTIFDAV GLAVEDLCCAEYIYQKIQGEN >gi|307679018|gb|GL456779.1| GENE 116 99708 - 101120 1122 470 aa, chain + ## HITS:1 COG:BS_ydeF KEGG:ns NR:ns ## COG: BS_ydeF COG1167 # Protein_GI_number: 16077585 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Bacillus subtilis # 1 462 4 464 465 259 33.0 7e-69 MPINSYENYALSWRPVKERLTRPYYQSLVQQLEADILSGALQKNVKLPSQRELADYLDLN FTTIGQAYKHAMEKGLLYTNIGSGTFVSPNAFHSITISTNQVADHLIDLGLVSSFDMCNQ RILPFIESVSKNAALNSLLNYRDPLGTHFQRATATEWLQTQGVRTNAEEVAIVSGVQNGL AVTLAAAFSPGQRIAVDRYTYSNFIELAQLYHLEIVPIGYDSEGMDPEHLLQECKKKKIH GIFLMPACNNPIGFQMSSARRMTLAEIIQQEHLWVIEDDIHSFLTTYAQQAVLPTFQELL PQQTIYLAGMTKFVCTGLRIAYLVFPPLLRQEIERAIFNINVKTSGFDAEIVTQVLRSPV AEELVIEKLALTKQANDLFDTIFGLARPSNPLPYYRTIPLSTEKTAPQIEQEFLQNGVRL FHSSRFTVQNQPDAFLRISLASNQLEVLAKGLTIIQELLPTLNEKKGHSL >gi|307679018|gb|GL456779.1| GENE 117 101117 - 101560 459 147 aa, chain + ## HITS:1 COG:lin1093 KEGG:ns NR:ns ## COG: lin1093 COG4815 # Protein_GI_number: 16800162 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 6 145 6 145 151 141 48.0 3e-34 MNSLPILEKAVGAITLLSEEKQNAEYEGFLCQVNESQQLIRSRLAKKTPKKEGYFAAFWE KNQQNQNEAFDATEAPEMLAIVIADQEKQGLFLLPKECLIQQKILKTNQQKGKMAARFYP SWCQNLNQTAKKTQKWQLAYFTDLSKY >gi|307679018|gb|GL456779.1| GENE 118 101621 - 102889 1421 422 aa, chain - ## HITS:1 COG:PH0854 KEGG:ns NR:ns ## COG: PH0854 COG0251 # Protein_GI_number: 14590714 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Pyrococcus horikoshii # 297 412 18 134 137 103 45.0 7e-22 MSNENIVLARNTERAPKHPLAAQTVAFSHYNHLSAQLPIEPTSGQLVEGGIRAQATQCLK NIQAVVESINHVMSDIVRMTIFVKDMRDAAAVEEVYAAFFTHYYPAKTVVAVADLPLGAS VQMEALVSNGEGTIPNAPQAGDLIKLTNQTVQAPIDALASQTVAFSHYNNLSAQLPIDPQ TGRVVAGCVKTQTKQCLKNIKAILTSIDVPFDDIVKINIYLKDLSKLEAVNQVHAAFFPD SGIARTVNYMPARTVIAVADLPMGAAVQVEAVVSHGDGTPPQAIEDRHGLIIEANNTEHA PKCPFSTQTVAFSHYNHLSAQLPLDPKTNALVAGGIKEQTTQCLENIKAIIESVDHSLAD LVKVNIFVKEIEELAAVDDVYQTYFPEGTPARRVIGVTDLPKGAQIQIEAIAGNAEGTPP IG >gi|307679018|gb|GL456779.1| GENE 119 103174 - 105660 2620 828 aa, chain - ## HITS:1 COG:SP0057_2 KEGG:ns NR:ns ## COG: SP0057_2 COG3525 # Protein_GI_number: 15900002 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetyl-beta-hexosaminidase # Organism: Streptococcus pneumoniae TIGR4 # 485 824 2 359 782 360 52.0 7e-99 MVFKVGNNLSTRKGENRETIVSWLGLSLLVGLAFILFSLFHQPMISQANEPTQEKHFMVY YRAWRDKTMQGVNTTLPDENWLTMHDIPYGIDIVNVFSYVPKGQEALAQPFYDTLKNEYA PALHARGVRLVRGIDYSELLKVPYAGTTPTEAEFDAYAKELLTKFVDDLGIDGLDIDMET RPSEKDIVLSNGVIRALSKYIGPKSGTDRPFLYDTNAEYLPPLQDVSDCFDFLAYQQYGS DDQRTQRALNNLSPVLNGERFVPGLTFPEEQDRNRWYDTKEPYMESNMYKVARYSYENNL GGMFLYALDRDGRTYNEDDLNQIKPSNLLWTKTAIAESKGVSLAEMKAAAQHYLKRISYA NTDLEAQNKAAEAVTQATTLYDVNKAILGGDYGQGLSNTYDAELEKGLLAIDLTTLYRAL DQAVTAIEKAESYTPETIQALQTTKETVATELAGKTYTAAQVTTWQTEVQTALDNLKEKQ TQPLKSVFSIDAGRKYFSVEQLEELVAKASQNGYTDVQLILGNDGLRFILDDMSVNVNGK KYNHNRVSKAIQRGNNAYYNDPNGNALTQKEMDRLLAFAKARNINIIPVINSPGHMDALL VAMEKLAIKNPAFDGSKRTVDLGNQKAVNFTKAIISKYVAYFSAHSEIFNFGGDEYANDV DTGGWAKLQSSGRYKDFVAYANDLAKIIKDAGMQPMSFNDGIYYNSDDSFGTFDPEIIIS YWTAGWSGYDVAKPEYFVQKGHKIFNTNDAWYWVAGNVDSGIYQYDDALANMSKKAFTDV PAGSPNLPIIGSIQCVWYDDPRRDYDFERIYTLMDTFSENYREYMVVK >gi|307679018|gb|GL456779.1| GENE 120 105892 - 106908 1006 338 aa, chain - ## HITS:1 COG:AGpA656 KEGG:ns NR:ns ## COG: AGpA656 COG0604 # Protein_GI_number: 16119675 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 2 333 26 358 359 299 48.0 6e-81 MMKAALIHKYGQKELSIEEVPLPTIHDNDVLVKIIAASINPIDLKTKDGKVKMLLNYQMP LILGSDFAGIVVSVGKNVQNFRMGDAVYGRVPKNRVGTFAEYIAVDQAAVAMKPKNLTFE EAAAIPLVGLTSYQALHDIMNVQPGQKVLIQAGSGGIGTIAIQLAKLAGAYVATTTSSRN KEWVQALGADEVIDYRTQNFEEVLSDYDYVFDTMGGTILEKAFSVVKPQGKVVTLSGIPN ERFAKEYGLPLWKQWAFKIATRKIHRLEQDTDVSYHFLFMRPDGEQLALLTEFIEQGKLQ PIIDRVIPFSQIQEAVDYSLTGRAQGKIVVKIADVNHD >gi|307679018|gb|GL456779.1| GENE 121 107088 - 107423 461 111 aa, chain + ## HITS:1 COG:no KEGG:EF0110 NR:ns ## KEGG: EF0110 # Name: not_defined # Def: ArsR family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 111 1 111 111 187 100.0 1e-46 MKELEEIQTEFTALSDFLIALGDEKRQAIIIALLEDQACVGRRVTELTEATQLSRPAVSH HLKILKQAKLIDCRSEGTKNYYSLSHDTTKIEQLQQLLTHITSIMPGRKQA >gi|307679018|gb|GL456779.1| GENE 122 107420 - 108100 678 226 aa, chain + ## HITS:1 COG:BMEII1016 KEGG:ns NR:ns ## COG: BMEII1016 COG0693 # Protein_GI_number: 17989361 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Brucella melitensis # 2 221 3 224 235 182 43.0 5e-46 MKKILVVLTNVSRYHGTEEPTGLWLGEATEFVEEVTKAGFSVDYVSPQGGYVPLDPRSMK YVDSSIMAVYESADFQERALAHSLSLEEIDPDEYAAIYFTGGHGVMWDFPDNPQLQAITR SLYEQGKYLTSVCHGIAGLLNVKDASGNYLIADKTITGFTTAEEILAMKKAVVPFLNETI AKEHGATFAKKRPYKEFAYQDGRIITGQNPFSVRAVAKLLIQQLSK >gi|307679018|gb|GL456779.1| GENE 123 108191 - 109642 1490 483 aa, chain - ## HITS:1 COG:SPy1543 KEGG:ns NR:ns ## COG: SPy1543 COG1288 # Protein_GI_number: 15675441 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 1 462 1 478 497 285 37.0 1e-76 MAEKKKKNKKQLSSFSILFIILIVLGIVTVLLNGQPFTPREIDGKMVDHVVGAKLSDIIM APFNGFKDAIEINIFILVLGGFLNIVTQTGALEAGIQSVVKKLKGNELKIIPILMILFSI GGSTYGMAEETIPFYGLLSATMVAAGFDTFVAVGTVLLGAGSGVIGSTVNPFSTGVAMDA LRGIGIQPNTGIILIVGAILWAASTSYSIFIVMRYAKKVKADKGSTILSLQEQEDMEKTY GQAASKEMPFTNRHKKILMVFAFCFVIMIVSLIPWNDFGVTIFKGWTSVLTGNSFGDWYF GDLAMWFFLLGIIAALIGRFTEKETIEAFIDGAKDMLSVVLIIVVARGASVLMSKTYLDS FILDKAAGLLQGLSPVLFVIGAFVLYLGLSFLIPSTSGLAYVSIPVMGALAKNIGLSPEV MVMIFASGCGLINLITPTSGVVMGGLEISKVQYATWTKFMAKPMIVLGLINLIILIGAML LFS >gi|307679018|gb|GL456779.1| GENE 124 109690 - 110379 550 229 aa, chain - ## HITS:1 COG:SPy1548 KEGG:ns NR:ns ## COG: SPy1548 COG0664 # Protein_GI_number: 15675445 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Streptococcus pyogenes M1 GAS # 12 224 15 222 226 139 36.0 5e-33 MIEKIITKNNQDFQYFSESELTELRNESFVRSYKKGQVLFYPGDPRNHLILLVSGVIKIE KNDRSGNFSYLHFMKKQALFPRIGLFQDEVHYDSAIAYTDIEVVFVPVKLFERFLQNNPQ QLIHWIQEQSVLLKESMIKIQKGTTNDACERIVTSLAMLLNDLGERIDNRERVAITCPIT INDIARMSGTTRETASSVMKKLVQMNRISYSHKFLTFLDTPFFIDRLSN >gi|307679018|gb|GL456779.1| GENE 125 110407 - 111339 1309 310 aa, chain - ## HITS:1 COG:SPy1541 KEGG:ns NR:ns ## COG: SPy1541 COG0549 # Protein_GI_number: 15675439 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Streptococcus pyogenes M1 GAS # 3 295 4 301 316 353 66.0 2e-97 MGKKMVVALGGNAILSNDASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNGPQVGNLLL QQQAADSEKNPAMPLDTCVAMTQGSIGYWLSNALNQELNKAGIKKQVATVLTQVVVDPAD EAFKNPTKPIGPFLTEAEAKEAMQAGAIFKEDAGRGWRKVVPSPKPIDIHEAETINTLIK NDIITISCGGGGIPVVGQELKGVEAVIDKDFASEKLAELVDADALVILTGVDYVCINYGK PDEKQLTNVTVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITSLENLGSMSG DEIVGTVVTK >gi|307679018|gb|GL456779.1| GENE 126 111445 - 112464 1466 339 aa, chain - ## HITS:1 COG:SPy1544 KEGG:ns NR:ns ## COG: SPy1544 COG0078 # Protein_GI_number: 15675442 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 339 1 337 337 551 77.0 1e-156 MNSVFQGRSLLAEKDFSRAELEYLVDFSIHLKELKKKGIPHHYLEGKNIALLFEKTSTRT RSAFTTAAIDLGAHPEYLGANDIQLGKKESVEDTAIVLGSMFDGIEFRGFSQEVVEDLAK YSGVPVWNGLTDQWHPTQMIADFMTVKENFGRLEGITLVYVGDGRNNMANSLLVTGAILG VNVRICAPKELFPSDEVVNYAKEFAKESGAELMITDDVAKGVKGANVLYTDVWVSMGEED KFEERVNLLKPYQINMAMLEKTENMDGDLIVLHCLPAFHDTKTQYGEMVAEKFGITEMEI TDEVFRSKYGRQFEEAENRMHSIKAIMAATLGNLFIPRV >gi|307679018|gb|GL456779.1| GENE 127 112494 - 113720 1429 408 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149020061|ref|ZP_01835035.1| 50S ribosomal protein L33 [Streptococcus pneumoniae SP23-BS72] # 2 408 3 409 409 555 67 1e-157 MSHPINVFSEIGKLKTVMLHRPGKELENLMPDYLERLLFDDIPFLEKAQAEHDAFAELLR SKDIEVVYLEDLAAEALINEEVRRQFIDQFLEEANIRSESAKEKVRELMLEIDDNEELIQ KAIAGIQKQELPKYEQEFLTDMVEADYPFIIDPMPNLYFTRDNFATMGHGISLNHMYSVT RQRETIFGQYIFDYHPRFAGKEVPRVYDRSESTRIEGGDELILSKEVVAIGISQRTDAAS IEKIARNIFEQKLGFKNILAFDIGEHRKFMHLDTVFTMIDYDKFTIHPEIEGGLVVYSIT EKADGDIQITKEKDTLDNILCKYLHLDNVQLIRCGAGNLTAAAREQWNDGSNTLAIAPGE VVVYDRNTITNKALEEAGVKLNYIPGSELVRGRGGPRCMSMPLYREDL >gi|307679018|gb|GL456779.1| GENE 128 114017 - 114505 515 162 aa, chain - ## HITS:1 COG:lin1404 KEGG:ns NR:ns ## COG: lin1404 COG1438 # Protein_GI_number: 16800472 # Func_class: K Transcription # Function: Arginine repressor # Organism: Listeria innocua # 1 148 1 145 149 76 31.0 3e-14 MNKQTRQSLIKEIIQTTVIHSQNELLRELKKREINVAQATISRDLWELKVVKALDESGEM RLTIFEQFTSLEERKKEQLIQAIREVVTKVERVAFLLLVHTLPDNATLFSAVLDEVSLCE KKCSVAGFDTVIIVSSSEEKAQELEQYFQQFIQPTPLSKSNA >gi|307679018|gb|GL456779.1| GENE 129 114748 - 115227 407 159 aa, chain + ## HITS:1 COG:lin1404 KEGG:ns NR:ns ## COG: lin1404 COG1438 # Protein_GI_number: 16800472 # Func_class: K Transcription # Function: Arginine repressor # Organism: Listeria innocua # 1 152 1 145 149 96 35.0 2e-20 MNRLKRQTMIKRLVTENEIHTQSELLALLEKENIHTTQATISRDIRELNLNKVDNGQGEA YYRILNNSALRPKYKTDEERLVDIIIETGVSLTQIEFTNLLTVLPGNGQAIGVLIDRIRI HNPHILGCIAGDDTILILSKNKEDALEVNNYFQQYLYHP >gi|307679018|gb|GL456779.1| GENE 130 115394 - 116329 734 311 aa, chain + ## HITS:1 COG:lin1226 KEGG:ns NR:ns ## COG: lin1226 COG2267 # Protein_GI_number: 16800295 # Func_class: I Lipid transport and metabolism # Function: Lysophospholipase # Organism: Listeria innocua # 1 299 1 299 306 204 38.0 2e-52 MTEQFILTSNDQQTQLNVRHWPCPSPKAVVQLIHGMAEHIQRYDEFARFLNQLGFAVIGH DHLGHGESVQPSAPIYGFFGEQGPENVVTDIHQVKQWAVNRYPQLPYFMMGHSMGSFALR NYLQDYPVTVQGVIFMGTGTSPLPLTAALPFIKKMAEKQPKKPAPFIDKLAFGSFSKKFP EASSFNWLSKNQANVADYENDPLMGFVFTNNGFATLFSLVKRANQRNWYQAIPKELPILI ISGAEDPVGDFSKGPAKIQKQLKHAGFQHVTLRLFPTLRHEILLETEKATVFQEIGHWLT DLTNKKRRLML >gi|307679018|gb|GL456779.1| GENE 131 116345 - 117616 1284 423 aa, chain - ## HITS:1 COG:SPy1742 KEGG:ns NR:ns ## COG: SPy1742 COG0172 # Protein_GI_number: 15675591 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 422 1 422 425 611 71.0 1e-175 MLDMKKIRQNVEVVQKKLKTRGVDEEVLLRFLALDEERRALLVKVEELKKHRNQVSGEIA QLKRAQKDASQQLLNMQEVSEQIKVLDQEVVHLQEQCTAIAERLPNLPHESVPVGADEAA NVEVRRWSTPKTFSFEPKPHWEIGEALGILDFERGAKVSGSRFLYYKGLGARLERAVYNF MLDQHVNEHGYTEVIPPYLVNSKAMFGTGQFPKFKEDVFQVAESDLTLIPTAEVPLTNYY NNEILDAQELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKFSDAEHSYEELE KMTNNAGDILEKLGLPYRVITLSTGDMGFSAAKTYDLEVWIPAQKTYREISSCSNCEDFQ ARRALIRYRDKTGHVQYAHTLNGSGLAVGRTVAAILENYQNEDGTVTIPEVLRPYMGGLT KID >gi|307679018|gb|GL456779.1| GENE 132 117643 - 118536 1285 297 aa, chain - ## HITS:1 COG:SA2318 KEGG:ns NR:ns ## COG: SA2318 COG1760 # Protein_GI_number: 15928109 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Staphylococcus aureus N315 # 1 289 1 289 299 304 62.0 1e-82 MYLSIEEFIDKAEKTGKKISDLMIEQEMERSQKSYEEIWTQMGQNLDVMDAAVKRSQEGA GVFSPTGLTGGDAARLKKYRAAGKTLSGDLMMSAVQAALGTNEVNAAMGVVCATPTAGAS GTLPGVLTAIKNTLNLTRDQQIRFLFTSSLFGMVTANNAMIAGAVGGCQAEVGSASAMAA AAAVEAAGGTPRQSSEAFAMALGNLLGLVCDPVAGLVEIPCVKRNTVGAGNALIAADMAL AGIVNKIPADEVVEAMNKVGRQLPRELRETGLGGLAGTATGQRMKNEIFEKVKFTIV >gi|307679018|gb|GL456779.1| GENE 133 118551 - 119258 890 235 aa, chain - ## HITS:1 COG:BH2497 KEGG:ns NR:ns ## COG: BH2497 COG1760 # Protein_GI_number: 15615060 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Bacillus halodurans # 17 212 1 195 220 164 44.0 1e-40 MNTAMAINKPKKVNKVMNYKSCFDIIGPIMIGPSSSHTAGALAIGLAARKLFGGTPEKIV IKYYESFADTHKGHGTDFAIIGGILGLAADDANVTQSIELAEEQGIEIQFLEMSEESPVK HANTACVTLSDATHEIHLTGISVGGGTIEVKYIELDGFNVQLHGPLPILLVINQEEQAMQ AFKDTLQKNNIQVNAVSRYVEGNQILFIFDLDSAPISSVKEQLFSLDDTSKIILL >gi|307679018|gb|GL456779.1| GENE 134 119233 - 120333 1424 366 aa, chain - ## HITS:1 COG:SA2320 KEGG:ns NR:ns ## COG: SA2320 COG1299 # Protein_GI_number: 15928111 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Staphylococcus aureus N315 # 1 333 1 333 347 273 49.0 3e-73 MKTLSGILMLVLVLCGMSLFSFKAPRGKKSLSALSGAACATFLPEAFLRYAVGGVFHLDY VSQIGETMGSLGGLAAGALVPLAFGISPVFSIILGLSLIKVSLLPAFITAYLLSFVVEQM QKRIPEGIDLLVVILVIPVAASLVAGFIQPVVLGVLEVIGGTILSAVDGNPYVMGAILGA IIPIVGMTPLSSMVLTALIGLTGVPMAVGALTCYGSSIVNAALFKKLKLGTASTPLAVAI EPLTQVDIISSNPIPIYATNLISGMVSGIVVTFFGLKVPVTGMATPWAGLLVTLGNNAIQ TTLLAVAIITVVSLMFGFLGALVFKRYRIEAVDNTPEFEGTTEVTSEKEAVKTKGGVTYE HSYGHQ >gi|307679018|gb|GL456779.1| GENE 135 120590 - 121270 672 226 aa, chain + ## HITS:1 COG:VC0355 KEGG:ns NR:ns ## COG: VC0355 COG2964 # Protein_GI_number: 15640382 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Vibrio cholerae # 7 225 23 237 240 172 38.0 6e-43 MESYLRLSEVDKQILHSHALMLDGLGNFFGSTHEVILHSLENLESSAIKVINGHFSNRKE GAPITDMALKMLSQVESEHDYAVKPYYNKNQKGVILKSSTIPVIGENDRIIGLICINMHL EMPLIDYLQDLLPSGQQNDMSQELKNSEHFSDNIDELITTSLTKVKQAVESDPNVSHLNQ NKEIVIRLYDQGIFNLKDSVIKIADRLGISKNTIYLHIRNHKKEEA >gi|307679018|gb|GL456779.1| GENE 136 121329 - 122114 760 261 aa, chain - ## HITS:1 COG:no KEGG:EF0095 NR:ns ## KEGG: EF0095 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 261 1 261 261 394 100.0 1e-108 MKKIALFSMLTFSVLSLSLAGCGNKKTASTNDSKPKQETKKATQKSSSQQEMKSSHSSVT GQNSNVTGENPSENATQPSAGTDETNEVPQNQAPDTNITITNVVFNPERNEINGTTLPNA TITATVVGDASAQAGVFYADANGNFTVISPRAGATTQLIATVDQRNSAPVQIDIPSSGQE AALSFSNITIDPKQGTISGKTAPNATILVSRADDARVILASFTADAQGNFTASNLVPGTK NRLDVTLNGEIGTPYLFDLPN >gi|307679018|gb|GL456779.1| GENE 137 122270 - 123031 998 253 aa, chain - ## HITS:1 COG:L195318 KEGG:ns NR:ns ## COG: L195318 COG2116 # Protein_GI_number: 15672950 # Func_class: P Inorganic ion transport and metabolism # Function: Formate/nitrite family of transporters # Organism: Lactococcus lactis # 1 253 1 253 264 317 65.0 1e-86 MYTPDEILSISIENGQKKIQKPLVAKLILGFIGGAMISLGYLAYVRVSASIPADLASVQA LVGAAVFPIGLIVILMAGGELITGNMMAVSTAWFAKKVSFRELLVNWVTITLANMVGALF VAYFFGHYLGLTSSGAYLNQVLSLAEHKVAATWLQAIISGIGCNWFVGLALWLCYGAKDA AGKLLGIWFPVMIFVAIGFQHSVANAFIIPAAIFEGGVQWGDFFRNFIFVYLGNIIGGAI FVSGFYYLSYRKH >gi|307679018|gb|GL456779.1| GENE 138 123208 - 126015 2224 935 aa, chain - ## HITS:1 COG:no KEGG:EF0093 NR:ns ## KEGG: EF0093 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 736 1 736 1055 1315 98.0 0 MKKTILILLFGLLTVVGLPMVTEAAEPVDATDATIFGAQAMVPNSTEDQTDKLQTLLSQT AKEGRALFLPQGSYALSKDIAISSNYQLIGDTTGATILHNATGTPIQLTDTTYGTKTNVR LQNIAFDGINVTLKLTNQLTLANNIFYNPLKGFVVNLNADIGVKISGNIFMRDTAHMQPG IDFNRAIYIGGYSTPSRFQYMSDVDIVDNLFGLKVTELDAIKSTSRSDLAATITRLQTAI EVGAISVPNEQNYLSTGVNSFNMLKDVTVQHNFFYSPYDNENLNGLGGDHAIYFRGAQNI TVVGNHLRGLQNGPAGGFKFKSGRNITIMNNYLRNTGLIMYGTPEIGLAETQAEGAISEL SNWLVANNIFDWKYWNNQYAIGMEYNRHTGNNNVFNGVFINNQFVNYHNIPQNRRRELLI ASGGGFRPETSFVKDNTRDDGLKNGQLLVENWTEADYRLMPATWESLISPTLYEQYKNTP IPVRNTLSTPVATTIVQGQSIDPQQLVANTNDADEAVPAAKIVNPEVLNEIGQQKVTVQL TYETGSLVTVNVPVTVEAPAKKLDLSQLQTVYASIGEANQYTVYSWQLFTAIGPKTIVPS YYQQATQLLAEGQESQDKTQEQVDQLTSNLQSAMKVLVKKADITLERTEAENELASVHKL DESVYTKDSWQAMQEALIDTTTGEGSSKQLQQLLAWSDEELLEPTLGGFKTPADAQKRIN QLTQTIKTALLLLVEKSTETTSNTSESSTSSTTSESSSTSENSTSSTTNESSSTSESSTP STTSESSSTSESNTPSTTSKTSSTSESSASSTTSATNSTSESSTPSTVNESSQNKGQNSV IYAVESNQDPNDAQSNSKPSAKASQTKESVAENQATKQIQTNQESSGTVKKADNTTKIAK KKFPKTGEQSSAVGSFLGLSFLSLAIATYCFKVKR >gi|307679018|gb|GL456779.1| GENE 139 126030 - 126269 388 79 aa, chain - ## HITS:1 COG:no KEGG:EF0092 NR:ns ## KEGG: EF0092 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 79 1 79 79 114 97.0 1e-24 MKKRMEQIEEILSCEENSAGVRLKELVEALELEVTNQNLLKVTSILHMNPKFKKIYAYED SRVITLYQLLQNKPLEVTE >gi|307679018|gb|GL456779.1| GENE 140 126614 - 128119 1393 501 aa, chain - ## HITS:1 COG:no KEGG:EF0091 NR:ns ## KEGG: EF0091 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 501 1 501 501 930 99.0 0 MKWDEYVDIFDTDVVSKIIILRNLPINEGWIDINELAEELQLNKKSVKKYVELLKDDITY YAVDNDASLAFEKGHGYRLNLASSQAFQKLYTAIFRDSLTYQVMEDLFWGRFNGIVPATA KYHTSDATIRRLLKGFTEILAPLGLVINKSTWKIEGNEAYLRHFAYTIFMDLIRDTWPFD YIQETEVAQTVQKMMAFFNVEVAETVTRRVKYMVAISKVRSAQGAEYRPSAEQETYLEGN KHYQAFIEEMTATTLFLNKNDLTFVYFFLLANDQFYQDEATAQAILAHFDETEAPVYMLT HLVQHFLLEEIHMTPQLEKIRPQIFYYLFATHLFAELYYVQNVKMYNVFWNKVKEKYPVL LEELSQGLNQLYEQTGNELFTNKEFLALRYSSVLALSNDLIHREQKIVLGLKSGLPVLEE ERVKLSIENNFRRFYALEVLRYSEASKEEWQNIDLLLVTSLADVETGHPEIFLLSSELTF EQYNRLNQKIVKINEKRTTSL >gi|307679018|gb|GL456779.1| GENE 141 128201 - 129112 1016 303 aa, chain - ## HITS:1 COG:SPy1158 KEGG:ns NR:ns ## COG: SPy1158 COG1597 # Protein_GI_number: 15675134 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Streptococcus pyogenes M1 GAS # 1 295 1 300 303 189 32.0 4e-48 MKKMMVLYNETSGSSESKEIAERFKKAAEARGEAVILQPSNPDIDPEEMRKNAQENQVGV LVVIGGDGTIHHAVQNFKDTIRDYQIGIIPGGTVNNFARVLSIPLKEEDAFETILAGQTT PVDFGMVNQDVMISTLTIGLLADTAANVTQQEKQKYGPLAFTKQFFRLLMKKKKYKLKID GDERRWHGKAQLLTMTMTNSAGGFTNFDANATPDDGEVHIIILPKLVFYKFVYYLPKIIR GQLNEIPGVVYFSGSQFKISGEKDKKVQTRTDGDPTDNLPIKVTVEAGGLNVFVPETSTS TKE >gi|307679018|gb|GL456779.1| GENE 142 129391 - 135489 7154 2032 aa, chain - ## HITS:1 COG:L148778 KEGG:ns NR:ns ## COG: L148778 COG4932 # Protein_GI_number: 15672133 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Lactococcus lactis # 167 2031 152 1982 1983 1156 38.0 0 MRKNGPMVNRWLYGLMCLLLVLNYGTPLMALAEDVNSDGQLTLGEVKQTSQQEMTLALQG KAQPVTQEVVVHYSANVSIKAAHWAAPNNTRKIQVDDQKKQIQIELNQQALADTLVLTLN PTATEDVTFSYGQQQRALTLNTGTDPTESTAITSSPAASANEGSTEEASTNSSVPRSSEE TVASTTKAVESKTTESTTVKPRVAGPTDISDYFTGDETTIIDNFEDPIYLNPDGTPATPP YKEDVTIHWNFNWSIPEDVREQMKAGDYFEFQLPGNLKPNKPGSGDLVDAEGNVYGTYTI SEDGTVRFTFNERITSESDIHGDFSLDTHLNDSDGRGPGDWVIDIPTQEDLPPVVIPIVP DTEQQIDKQGHFDRTPNPSAITWTVDINQAMKDQTNPTVTETWPTGNTFKSVKVYELVMN LDGTIKEVGRELSPDEYTVDKNGNVTIKGDTNKAYRLEYQTTIDEAVIPDGGGDVPFKNH ATLTSDNNPNGLDAEATVTATYGKMLDKRNIDYDEANQEFTWEINYNYGEQTIPKDQAVI TDTMGDNLTFEPDSLHLYSVTFDDKGNEVVGAELVEGKDYKVVINGDGSFAIDFLHDVNG AVKIDYKTKVDGIVEGDVAVNNRVDVGTGQHSEGDGTASQQNIIKNTGAVDYQNSTIGWT LAVNQNNYLMENAVITDTYEPVPGLTMVPNSLVVKDTTTGAQLTLGKDFMVEITRNAEGE TGFKLSFMGAYAKTSDAFYVTYTTFFDVTELDANNPALDHYRNTAAIDWMDEAGNNHHSE DSKPFKPLPAFDLNAQKSGVYNAVTKEITWTLAVNLSNNRLVDAFLTDPILANQTYLAGS LKVYEGNTKPDGSVEKVKPTQPLTDITMEEPSEKNQNTWRVDFPNDSRTYVIEFKTSVDE KVIEGSASYDNTASYTNQGSSRDVTGKVSIQHGGESVKKGGEYHKDDPDHVYWHVMINGA QSVLDDVVITDTPSPNQVLDPESLVIYGTNVTEDGTITPDKSVILEEGKDYTLEVTTDNE TGQQKIVVKMAHIEAPYYMEYRSLVTSSAAGSTDTVSNQVSITGNGSEVVHGDDNGDVVV DIDHSGGHATGTKGKIQLKKTAMDETTILAGAHFQIWDQAKTQVLREGTVDATGVITFGG LPQGQYILVETKAPEGYTVSDELAKGRVITIDEETSAEGAQPTIIKNDVNKVILEKTDEK GKKLVNARFKLEHAVTTPFTHWEEVPLAPDRTNANGQLEVDSLKPGLYQFTEIEAPTGYL LDTTPKRFIVTQNTSGQIHDVHVKMLNYQGSAELIKKDQAGNPLAGAEFSVLDTTGQAVR EHLVSDANGKVTVTDLAPGKYQFVETKAPAGYLLNTEPSAFTIAASDRGKPATVIATANF VNYQGAAKLIKKDVNGYLLSGATFKVLDAKGQTIQTGLTTNSQGEIIAEHLAPGKYRFVE TKAPTGYLLNTTPVPFEIAEKNAGKPAVVVASDNFVNYKGAFQIVKTNSADQPLAGAVFE LYDHNKQSLGITATSGKDGKIIFRDLAPGTYYYKEIKAPKLPDGADYIIYPELVKVEIRG DFKGDPEIFQLGAFANFKGRAVFKKIDANANPLPGTIFKLYRIENGEKIFEREVTAEKDG SLAMEDLGAGSYELDEMDATDGYIVNKQPIYFVVKKNSNDKQPLDELEFVNYQAEVTGRK VNEQGQTLAGAVFAIYNADNQNQPQGSPITFLNRAGEKVSEITTDKTGEIYAKGLNEGHY VLVETKAPTGYLLDTTPHPFDVTAQLGKEQPIALGDLINYQGTAQLTKENETGEALAGAV FKVIDETGQTVAGQANLMSDKQGKVIAKNLAPGTYRFVETQAPTGYLLNETPSASFTIAK DNQGKPATVVLKAPFINYQGAAKLVKIDQQKNALAGAEFKVTDAETGQTVARSLRSDNQG LVQVDHLQPGKYTFVETKAPDGYQLSKQAVAFTIAATAKDNPELVDAGTFVNEKQPVSKK TKPNQPTTKQVARETGWLGLPKTNTQVNYFFVFIGLLLVGLASWLFYKKSKK >gi|307679018|gb|GL456779.1| GENE 143 135972 - 136127 115 51 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256964058|ref|ZP_05568229.1| ## NR: gi|256964058|ref|ZP_05568229.1| predicted protein [Enterococcus faecalis HIP11704] hypothetical protein HMPREF9514_02834 [Enterococcus faecalis TX0855] predicted protein [Enterococcus faecalis HIP11704] hypothetical protein HMPREF9514_02834 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9518_00901 [Enterococcus faecalis TX1342] # 3 51 18 66 66 80 100.0 3e-14 MTLTIASERTSCSYATVSILKNQEELNVSNGRKHGQKMVEQKIIKKNNQFI >gi|307679018|gb|GL456779.1| GENE 144 136199 - 137686 1161 495 aa, chain + ## HITS:1 COG:no KEGG:EF0086 NR:ns ## KEGG: EF0086 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 495 1 495 495 916 100.0 0 MYNLLTKQEIQLLSLIEYLYDSKEKVPMQVLRRKYEFSHYNINNLLNQLTLLISRVNTHE NVHIRIINNQQSIELVADENIPIELMKEAVVRGSLTYMLALDLLLKRYTSAKDFCEEHFI NFSIFKQVSDRLNNHLARFNCYLNLKRREKICGNEKDFRSFFYSLFFISGTSLVPFLSKT NQAQLQNFIEIIKNRYPYFTYTDLRKLKLIMSIGLLRYQSGFTITNYPEVAAINLAFPYS EFQLLVNDCFIDEQKEPDTWQAEIHFYYDFFSTLTMYSLVQMETINFANLAIMGMDNSPH ATWIFEKCTQLQLDLSAIEVVFLLVNLSNASERLIHFPVEEELSYEVANVSLYEKQYPNV SRTTNYFLKRLPFDKQHPLDALFKETIFLIIRSVLLNKQIPVKILLHSSINQIQENWLAK EINNYCDVPLKFVNHIQEVPDLVITDKNNPLFHASKTFYWHPVPYLDEYYNLKQVVRKIY FAKLRGENSLEGIGC >gi|307679018|gb|GL456779.1| GENE 145 137680 - 139164 1193 494 aa, chain + ## HITS:1 COG:no KEGG:EF0085 NR:ns ## KEGG: EF0085 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 360 1 360 367 618 100.0 1e-175 MLTGLLDVPYRKSFALLEELLERREAEEQTLAISTLATQLKMQQNTILQSVALLQTEIEK NGWENLFSLSANAKEITFWFAPYFQLSFLMPYFVKKSFAYQVLTYAFNHNAIDSKHFEKV LEISSSTFTRKIGQLNQWLQKYQIEINLKRTNVLVGKEKDIRIFFMMLFWNNYSEGDWPL HTITKKEVHSLFRRLKHSVSFNTTQDFTKDLIFSAVILARWKEGFFIKETFVEEEAIVNP FVNLSEFELFFKEEALHQVPTKFIQKEGLFAFFLLTISVSYATQDVLEIPAARMHMVQLL GSPIKEIIYQLTSFYQIKLTFHEYLYLYTSIQNLSVFFKTFVTIANPFVQESFLKEALQK NPSLYKDVKRLTIEMLPTLMGNEKLLVDCLFILFCTLKTKSLPPIRVLVRTNQSNLILDT LYEKLSKAVDKKLIFVASPEKPFDVIITDIFSEVSVKSTVPTYYVDFSASIGELAQNLEN LNTQIVTKQSPRHF >gi|307679018|gb|GL456779.1| GENE 146 139320 - 139499 337 59 aa, chain - ## HITS:1 COG:no KEGG:EF0083 NR:ns ## KEGG: EF0083 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 59 1 59 59 77 100.0 2e-13 MPNDERILNVLQQTLTEIQRMNTRLAKIETELADVDQHHATLDHYLQELELVTENNNVM >gi|307679018|gb|GL456779.1| GENE 147 139520 - 140755 1447 411 aa, chain - ## HITS:1 COG:lin1217 KEGG:ns NR:ns ## COG: lin1217 COG0477 # Protein_GI_number: 16800286 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 8 391 4 386 401 467 67.0 1e-131 MTEQTPTKLLNKGFISITVINFIVYLVYYLLMVIIAVIAQDSLHATLGQAGLASGIYIIG TLLARLFMGKLLELIGRKQVLRYGALFYLLTTVAYMYMPSMGILYLVRFLNGFGYGTVST ATNAIVTAYIPKNKKGEGINYYGLSTSLAAGIGPFIGMLLLNVSNFHVIINFSIILILLT TIACFIFPVKNIELTPEHREALSKWNFDSFVEKKVLFITFIAFLMGLAYSSVLSFLSSYV KVIDLVDVSTFFFIVYAVVITLTRPSTGRIFDVKGERYVMYPSYIFLTLGLFLLSMTTSG WMLLVSGGLIGLGYGTFMSNGQAVCLQESPSPHRIGIALSTYFIGLDLGLGVGPYVLGEL RNFMSFQQMYFLAGCIPIVCTILYMVFHKAKNDAKDLSLETIEEIEHGSEL >gi|307679018|gb|GL456779.1| GENE 148 141052 - 141309 303 85 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|257421416|ref|ZP_05598406.1| ## NR: gi|257421416|ref|ZP_05598406.1| predicted protein [Enterococcus faecalis X98] predicted protein [Enterococcus faecalis X98] conserved domain protein [Enterococcus faecalis TX0043] conserved domain protein [Enterococcus faecalis TX0312] # 1 85 3 87 87 106 100.0 5e-22 MELLEKLWKEYQKNLQKVTAQSLGLSLLQQSKKVQKSKRREKNALGQAKRSIENANTGLE KSVQGQFGKKVTDVLDIQSQTIDSL >gi|307679018|gb|GL456779.1| GENE 149 141325 - 141630 360 101 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229547054|ref|ZP_04435779.1| ## NR: gi|229547054|ref|ZP_04435779.1| conserved hypothetical protein [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis E1Sol] predicted protein [Enterococcus faecalis X98] hypothetical protein CUI_1689 [Enterococcus faecalis PC1.1] conserved domain protein [Enterococcus faecalis TX4248] conserved domain protein [Enterococcus faecalis TX0109] conserved domain protein [Enterococcus faecalis TX0102] conserved hypothetical protein [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis E1Sol] predicted protein [Enterococcus faecalis X98] hypothetical protein CUI_1689 [Enterococcus faecalis PC1.1] conserved domain protein [Enterococcus faecalis TX0109] conserved domain protein [Enterococcus faecalis TX4248] conserved domain protein [Enterococcus faecalis TX0102] conserved domain protein [Enterococcus faecalis TX0017] conserved domain protein [Enterococcus faecalis TX0027] conserved domain protein [Enterococcus faecalis TX4244] conserved domain protein [Enterococcus faecalis TX0031] conserved domain protein [Enterococcus faecalis TX0043] conserved domain protein [Enterococcus faecalis TX0312] conserved domain protein [Enterococcus faecalis TX1302] hypothetical protein EF62_0467 [Enterococcus faecalis 62] ATP synthase F0 sector subunit B [Enterococcus faecalis OG1RF] conserved domain protein [Enterococcus faecalis TX1467] # 1 101 1 101 101 109 100.0 6e-23 MTTADELERCRRQLRELDEQEMLLASYQRKSQQLAEETYYNIQSAIRMIAENQQPLQQAR QALGRLEYDFSEEVSHAKRKLYRQREELEIKYRKLNAQRES >gi|307679018|gb|GL456779.1| GENE 150 141627 - 143024 1422 465 aa, chain - ## HITS:1 COG:no KEGG:SaurJH9_0469 NR:ns ## KEGG: SaurJH9_0469 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_JH9 # Pathway: not_defined # 128 464 140 441 441 67 23.0 1e-09 MDNYRKFSEIVYGVEKETTNSGNVIKYKGAKYLVIDTIDTDKDTLGYEHELRSNSMQAMT VAEIKDEYKSYKDSKLKEIKGYPQSVINQNLTIVYAGTKSWQDWKTNFREIGFNDKHQAG AFQSALTYASQIERQYSPEAGYTINTTGHSLGGAEAIYVAVLKGYNAITYGAAGSGLTDE QIKNYKGQIINFYDTSDAVTSSFVTGGQGKIPFYSFGVDNYSGVIVGWVKKTFGHDLDMF EIDDAGNYIDKFGDIAVYSDGHGGVAIEQTILAQQILENKNRIRGLETYDGTNPETLAEI NRLKKENKWLQEQLKQFNQLNELRVSLTASGGGLSSNERIYLEDSQALAVVKVAASQFDV AMEECLHIYKKVMQELQEDWENGLQLIQRHTPELSYAEMREAMDQVQCTKQTMVDQDLEY FQKKFSKINRIRTSFVQLTQQITAKINELVQRDQELANQLKGALT >gi|307679018|gb|GL456779.1| GENE 151 143024 - 143539 490 171 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229547056|ref|ZP_04435781.1| ## NR: gi|229547056|ref|ZP_04435781.1| conserved hypothetical protein [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis X98] conserved domain protein [Enterococcus faecalis TX0102] conserved hypothetical protein [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis X98] conserved domain protein [Enterococcus faecalis TX0102] conserved domain protein [Enterococcus faecalis TX0043] conserved domain protein [Enterococcus faecalis TX0312] hypothetical protein EF62_0465 [Enterococcus faecalis 62] # 1 171 1 171 171 273 100.0 5e-72 MKHKKQWLIGLLIILIIGIGGKWYMDEQEKAKLHEIQTDLANYLYNNYRLYTVDEAKDEQ LNKEYNRGEGSLTTEEFLKKSDKLKEYSDIKKVEFTSFAVGPMKGLEVEFIINDVYEDNT TLSTISAETGKFRYSLDPGNTRNNYVLEEKEQPTSVTIPKNKIIYYEGGIK >gi|307679018|gb|GL456779.1| GENE 152 143694 - 144134 367 146 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315158491|gb|EFU02508.1| ## NR: gi|315158491|gb|EFU02508.1| hypothetical protein HMPREF9508_01710 [Enterococcus faecalis TX0312] # 1 146 25 170 170 247 100.0 2e-64 MDEQEKAKLHEIQTDLANYLYNNYRLYTVNEKEEKIFKEFNRGKGSLTEQEFFDKLEKLK EYSDINKIEFTGFSVSPMKMLKVHYTINKKLNKQTYLNTISAETNKLVFKIGEHEGEGPY YLEKKPTATNLPVPESLVTYDEGGIR >gi|307679018|gb|GL456779.1| GENE 153 144371 - 144613 499 80 aa, chain - ## HITS:1 COG:SPy1265 KEGG:ns NR:ns ## COG: SPy1265 COG2261 # Protein_GI_number: 15675224 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 1 79 1 79 82 68 69.0 3e-12 MGFIWALIVGGVIGAIAGAITKKGSSMGIIANIIAGLVGSTIGQAILGTWGPSLAGMAIV PSIIGAVILVAIVSWILGRK >gi|307679018|gb|GL456779.1| GENE 154 144637 - 145197 1000 186 aa, chain - ## HITS:1 COG:SP1804 KEGG:ns NR:ns ## COG: SP1804 COG1302 # Protein_GI_number: 15901633 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 186 1 184 202 167 55.0 1e-41 MSNEKFNNVPKPAGNGPHTPEDHAIKGELTFEDKVVQKIIGLALENVDGLLTVDGGFFSN IAEKLVNTDNVTAGIDTEVGKKQVAVDMDIVVEYGKDIQDIYEKMKELISREVKKMTHLD VIEVNVNVVDIKSKEEYEEDSETVQDKVTGAAKSTGEFASEQTEKAKKAVNKGTEQVKEN MEPRVE >gi|307679018|gb|GL456779.1| GENE 155 145256 - 145768 812 170 aa, chain - ## HITS:1 COG:SP1804 KEGG:ns NR:ns ## COG: SP1804 COG1302 # Protein_GI_number: 15901633 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 9 170 23 184 202 149 51.0 2e-36 MENANVSIVKGELTFEDKVIQKIIGIALEEVDGLLTVDGGFFSNLRDKMINSEDVTTGIH TEVGKKQVAVDMDIVAEYGKDIETIYDQMKEVITREVQQMTHLEVIEVNVNVVDIKTQAE YQEESETVQDKLGNAAEATGSFMSKQTNKAKHAVTKGKTKVKENTAPRVQ >gi|307679018|gb|GL456779.1| GENE 156 145781 - 145972 305 63 aa, chain - ## HITS:1 COG:no KEGG:EF0078 NR:ns ## KEGG: EF0078 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 63 1 63 63 79 100.0 5e-14 MVEWIKQYAVPLIGGLVGLVFAILFLSIGFFKTLLVVLLTGLGIWLGLYLEQTGIVKNYF HHK >gi|307679018|gb|GL456779.1| GENE 157 145985 - 146557 574 190 aa, chain - ## HITS:1 COG:no KEGG:EF0077 NR:ns ## KEGG: EF0077 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 190 1 190 190 315 100.0 5e-85 MNKVVKILLLLGSLILMALFGAVAITTWSADTAWQPPDNVQWFLQDNEYARQAIFWVALV LLGIMLFLFLFILLFPRRKGTFELKEEQGKLVLHRKAIEGFVRSSLQDSDFLEAPTIRVK ATKRRIKVNVKGTLKRTADLIGQTEAWSKTMEERLARLVGTGHKITIDVHFEDIQSMKRP QQQQTQARVE >gi|307679018|gb|GL456779.1| GENE 158 146570 - 147463 175 297 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163797523|ref|ZP_02191474.1| 50S ribosomal protein L9 [alpha proteobacterium BAL199] # 54 270 7 223 259 72 26 2e-11 MTEPNLKDPRKLFYSDGFPQQDQETPALQDKMVPKPDCGEDSYVGNHKLENRRVLITGGD SGIGRAAAIAFAREGADIALHFFPGEEKDAEEVAHYIREAGRKVVLLPADLRDKQAPEKL VAQAHEALGGLDTLVLNAAQQISCAAIEELPMEQVIDTFHVNIIAMFGIVKAAVPHLPAG SSIVTTTSVQAFNPSEHLLDYAATKASIANFTVGLAKQLAPKGIRVNGVAPGPIWTPLQL DHGQPIEELPEFGQHSLLERAGQPAELAPVYVFLASNDASYVTAQVYGVTGGEAINL >gi|307679018|gb|GL456779.1| GENE 159 147748 - 148401 795 217 aa, chain + ## HITS:1 COG:lin1218 KEGG:ns NR:ns ## COG: lin1218 COG0664 # Protein_GI_number: 16800287 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Listeria innocua # 2 216 3 218 219 275 64.0 6e-74 MRNVLQDYLDEHSFRVVVKKKKNYLTYEGLQDRYAYILKSGIIKTSVISKDGREFNLRYI NNLEIVSLLRDEYSEFIDAPFNIRIESPQAELYQIDRVQFWRDINNSKDLQMYVKEYYRD RLMHSMKKMQQMLMNGKFGAVCTQIYEMYDSFGVETEEGILIDFVVTNEEIAHFCGITSA SSVNRMMQQLKELGAIELRNRKILIKDLDMIRDNIIV >gi|307679018|gb|GL456779.1| GENE 160 148444 - 149361 768 305 aa, chain - ## HITS:1 COG:no KEGG:EF0073 NR:ns ## KEGG: EF0073 # Name: not_defined # Def: Cro/CI family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 305 1 305 305 563 99.0 1e-159 MDVLGALKYFRKKKKIAQKDVLPKKGKQTYRRIEIGEAKLSYEDLMTALQSLGITFNEFF FMVSDTRIMASSEVKHQIECCQLGLNNTSEKKNLIHYFYQLERNPHKNALEMSIYTDIKL TFSNDWEEIPEFDETDRMVILALISSKSYYTYYDYQMVTNPAALFSENEVLQILEQMFPV KDAELRDTQTLNVAYGFYLNIITGELYKKNYAKAREYLALVSVTTIPAEIYYIHFNLRYL KNLTYYLYTGKMRYYKEVIAVIDMIESFGDVRLAEGMKKEMLQLTAGRTFNLEKGQFPLN IVTEK >gi|307679018|gb|GL456779.1| GENE 161 149908 - 152247 2630 779 aa, chain - ## HITS:1 COG:no KEGG:EF0071 NR:ns ## KEGG: EF0071 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 779 1 779 779 1470 99.0 0 MKGLSKKKRVSTWLALGITVVSCFALSGEVQASVERTKVDEFANVLDVSASPTERTNGVY DTNYFNNFSDLGAWHGYYLPEKSNKELLGGFAGPLIIAEEYPVNLAASLNKLTVKNKKTG ETYDLSQSNRMDLSYYPGRLEQTYELDDLTIHLALIFVSNRTALIQTTLENTGEEPLSLE ASWTGAVFDKIQEGTETLDIGTRLTAKDNDIQVNFGEVRETWNYFATKDTKYTIHHADKV STKIDNRNYTATAEPIELKPKQTYNTYTTESYTFTKEEEAKEQQQAPEYTKNAARYFKEN KQRWQGYLDKTFDQKKTAEFPEYQNALVKSIETINTNWRSAAGAFKHDGIVPSMSYKWFI GMWAWDSWKADVATADFNPELAKNNMRALFDYQIQKDDTVRPQDAGAIIDAVFYNQDSAR GGEGGNWNERNSKPPLAAWAVWHIYQETKDKEFLKEMYPKLVAYHNWWYTNRDYNKNGIA EYGSMVSDAHWQKDDKDQIIKDKNGQPKVDDDAVIEAAAWESGMDNATRFDKEGVGKGDV GVKVFENKNKGKVVGYSINQESVDLNAYLYAEKGYLASIAEELGKKEDYKNYQKEAKKLK KYIQENMFDEKTGFFYDLQINEDGSKTKLLVNRGKGTEGWLPLWAKVATKEQAAAVKKNM MNQEMFNTFMPFPTASKDNEKFAATKYWRGPVWLDQALFGVEALQNYDYTKEAKEMTQKL FLHAEGLMGEGPIHENYDPLTGKGLSTKNFSWSAAAYYLLYKNTLLSNNPTTQTAFEIK >gi|307679018|gb|GL456779.1| GENE 162 152425 - 153120 703 231 aa, chain - ## HITS:1 COG:BB0644 KEGG:ns NR:ns ## COG: BB0644 COG3010 # Protein_GI_number: 15594989 # Func_class: G Carbohydrate transport and metabolism # Function: Putative N-acetylmannosamine-6-phosphate epimerase # Organism: Borrelia burgdorferi # 4 228 6 229 232 245 58.0 6e-65 MNKEIKGALIVSCQALADEPLHSSFIMSKMALAAKQGGAKGIRANSVVDIRAIRKEVDLP IIGIIKRDYPDAEVYITATMREVDELMAVQPEIIALDATHSKRPNGETLATFFKRIKEKY PNQEWMADCSTLEEMIEAAELGFDYIGTTLVGYTPQSENQRIEQNDFELLREAKKHFTTP IIAEGMIDTPAKVQRVLELGAYSVVVGSVITRPQKITEKFVEATKIKQNQA >gi|307679018|gb|GL456779.1| GENE 163 153265 - 154281 1287 338 aa, chain - ## HITS:1 COG:SP0259 KEGG:ns NR:ns ## COG: SP0259 COG2255 # Protein_GI_number: 15900193 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, helicase subunit # Organism: Streptococcus pneumoniae TIGR4 # 6 334 3 331 332 466 71.0 1e-131 MTEEERLLSAASQEAEASIEKSLRPQFLAQYIGQDKVKQELTIYIEAAKNRNEALDHTLL YGPPGLGKTTMAMVIANEMNVNIRTTSGPAIERAGDLVAILNELEPGDVLFIDEIHRLPR VVEEMLYSAMEDFYIDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISH MEYYQEQDLKEIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQSDG KIDRAIADKALTLLQVDHQGLDYVDQKLLKTMIDLYGGGPVGLSTLSVNIGEETETVEDM YEPYLIQKGFIKRTPRGRIATPFAYAHFGYDYLEGRKN >gi|307679018|gb|GL456779.1| GENE 164 154294 - 154908 787 204 aa, chain - ## HITS:1 COG:L0266 KEGG:ns NR:ns ## COG: L0266 COG0632 # Protein_GI_number: 15674189 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, DNA-binding subunit # Organism: Lactococcus lactis # 1 203 1 197 197 189 52.0 2e-48 MYEYIIGKVTFVSPYYIVVETNGIGYQISVDNPYRYSGKMDTDIKLYLHQVVREDAQLLF GFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGEDVTYLTKFPGVGKKT AQQMILDLKGKLGELESSEAAVAAMTVTEVVTTSNQALAEALEALSALGYSDREIKRITK QLEALGETTTDVYLSNALKFMMKR >gi|307679018|gb|GL456779.1| GENE 165 155127 - 156113 1279 328 aa, chain + ## HITS:1 COG:BS_yceB KEGG:ns NR:ns ## COG: BS_yceB COG2141 # Protein_GI_number: 16077357 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Bacillus subtilis # 20 328 3 313 313 233 42.0 4e-61 MKLSILDQLTVPKNQSASDTLQEAKELAQLAEKLGYTRIWYAEHHGSDAFASATPEILVA HIASATEKIRVGAGGIMTMHYAPFKVAETFKTLAALYPDRIDLGMGRSPGGSPLTTLALN NGQPPQLDQFDKLPEILLFLREEFPEDHLYSKISAVPREVLLPQPWLLGASKESARSAGE YGINFSFAQFIHGHLPKEVLSAYYKHFRPVTEQQEPQVSAAYFTFAADTKEEAEYHAASF EHYIFATEHGLPNKFLSPEEALAFPYSEMDKLVLEQNKQRFVIGSSQEVAEFFHQQEELG LTEAMLITPGYDKQTRFQSFERLAKELL >gi|307679018|gb|GL456779.1| GENE 166 156128 - 156352 372 74 aa, chain + ## HITS:1 COG:no KEGG:EF0064 NR:ns ## KEGG: EF0064 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 74 1 74 74 104 100.0 9e-22 MLEVLKRINTLAQKEREQGLTSEEQALRVDLRQEYLRTIREQFNKTLMGVTIYDPTGEDV TPEKLKEEQQKYFD >gi|307679018|gb|GL456779.1| GENE 167 156399 - 158078 2104 559 aa, chain - ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 22 558 22 559 559 421 41.0 1e-117 MKSKRIKGLIGLSLTTLLVLAACGGDGGAGAEKAKGGSEKTAAKQEFKVVVQQEMPSADL SLGTDTISFTALNNAYEGIYRLDDKSKPQPAGAKEKVQVSDDGLTYTVKLREEAKWSNGD PVTAADYVFSWQRTADPQTGAEYAYFLEMIENGADIVAGKKPVSELGIKANGDYELEIKL AKPTPYFDYLLAFPLFFPQHQATVEKYGKDYAASSEKAVYNGPFVLANFEGAGSDTNWTL EKNENYWDKDNVKLDKINFDVVKEAPTALNLFQDGQADDVILSGELAQQMAKDPELVIEK EARTSYLEFNQRDKNSPYNNVNLRKAISAAIDRNALVDKILGDGSVVATGLIPEGMSYSP TDDTDFADENKKIVEYSPEKAKEYWAKAKKELGITTLKMDIVADDVDSTKKLAEYIQGTL KDTLEGIDVTVSPVPFSVRIDRGSRGDFETILGGWAADYADPSSFLDLFVTGNNYNRGRF SSKAYDELIEASATRDASDPEKRWEDMVKAEKLLIGEETALAPLYQKATAHLRSKEVKGV VAHGAGAQYDYKWTYVTEE >gi|307679018|gb|GL456779.1| GENE 168 158214 - 162179 4282 1321 aa, chain - ## HITS:1 COG:SA0022 KEGG:ns NR:ns ## COG: SA0022 COG0737 # Protein_GI_number: 15925728 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Staphylococcus aureus N315 # 667 1321 113 772 772 431 41.0 1e-120 MKKLSFKKVKWGMHFLMAVALIAPSVTSTAYAVETTSQQSSEAVTSTTDSSRKQEPVITQ ETTDIKQEAPNQATSDSVKQSQETTAPTETTNLETSTAEKEETSTPQKITILGTSDVHGQ LWNWSYEDDKELPVGLSQVSTVVNQVRAQNPAGTVLIDNGDNIQGTILTDDLYNKAPLVN EKTHPMITAMNVMKYDAMVLGNHEFNFGLPLIQKIQQEATFPILSANTYNKEDGRRFVKG TTTKELDFNQDGQPDLKVGIIGLTIPHIPLWDGPRVTSLNFLPLKEEAEKAVTELKTNDQ ADIIVASIHAGQQNSDPAASADQVIENVAGIDAYILGHDHLSFTKQGAAPNGKTVPVGGP KDTGTEVVKIDLSVAKNADKWEVQEGTATIVPTTNVPADEAVKAATKEYHEKTRAFIQEE IGTATADFLPKQEIKGIPEAQLQPTAMISLINNVQKEVTGAQLSAAALFKYDSKLPAGKI SYATIFDIYKYPNTLVSVPINGENLLKYLEKQGAYYNQTQPDDLTISFNPNIRVYNYDMI SGVDYKIDISKPVGERIVDAKIDGQPLDPAKEYTIAMNNYRYGGLASQGIQVGEPIKNSD PETLRGMIVDYIKKKGTLDPEQEIERNWSIIGTNFDEKWRAKAIELVNDGTLQIPTSPDG RTPNAAAITKQDVRNAGFDLDNAYTIMHTNDVHGRLEAGKGELGMARLKTFKDQENPTLM VDAGDVFQGLPISNFSKGADMAKAMNEVGYDAMAVGNHEFDFGLEIALGYKDQLNFPILS SNTYYKDGSGRVFDPYTIVEKAGKKFAIVGVTTPETATKTHPKNVEKVTFKDPIPEVEAV INEIKEKYADIQAFVVTGHLGVDETTPHIWRGDTLAETLSQTYPELDINVIDGHSHTAVE SGKRYGKVIYAQTGNYLNNVGIVTAPENEPTKKTAKLIPAEELLGLPENPAVKAIVDEAR TNFNAENEKVIVDYIPFTLDGQRENVRTRETNLGNLIGDAIMSYGQDAFSQPADFAVTNG GGIRADIKQGPIKVGDVIAVLPFGNSIAQIQVTGAQVKEMFEMSVRSIPQKDENGTILLD DAGQPKLGANGGFLHVSSSIRIHYDSTKPGTRLASDEGNETGQTIVGSRVLGIEIKNRQT QKFEPLDEKKQYRMATNDFLAAGGDGYDMLGGEREEGISLDSVLIEYLKSATSLRLYRAA TTIDLAQYKEPFPGERIVSISEEAYKELIGGGETPKPDPKPDPKPDPKPDPKPTPETPVA TNKQNQAGARQSNPSVTEKKKYGGFLPKTGTETETLALYGLLFVGLSSSGWYIYKRRNKA S >gi|307679018|gb|GL456779.1| GENE 169 162621 - 163997 1837 458 aa, chain - ## HITS:1 COG:lin0237 KEGG:ns NR:ns ## COG: lin0237 COG1207 # Protein_GI_number: 16799314 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) # Organism: Listeria innocua # 1 457 1 457 457 542 59.0 1e-154 MENRYAIILAAGKGTRMKSKLYKVLHPVAGKPMVEHILDQVEQTEPTEIVTIVGHGAEMI KSHLGERSQYALQAEQLGTGHAVMQAQELLGGKQGTTLVITGDTPLLTAETLKNLFDYHQ GKNASATILTAHAEDPTGYGRIIRDHVGIVERIVEQKDASEEEARVQEINTGTFCFDNES LFEALAKTDTNNTQGEYYLTDIIEILKKEGKAVAAYQMADFDEAMGVNDRVALSTANKIM HRRLNEMHMRNGVTFIDPDTTYIDEGVVIGSDTVIEAGVTIKGKTVIGEDCLIGAHSEIV DSHIGNQVVVKQSVIEESVVREGADVGPYAHLRPKADVGANVHIGNFVEVKNATIDEGTK VGHLTYVGDATLGKDINVGCGVVFVNYDGKNKHQTVVGDHAFIGSATNIVAPVTIGDHAV TAAGSTITEDVPSEDLAIARARQVNKEGYAKKLPYMKD >gi|307679018|gb|GL456779.1| GENE 170 164208 - 165029 1008 273 aa, chain - ## HITS:1 COG:lin0231 KEGG:ns NR:ns ## COG: lin0231 COG0503 # Protein_GI_number: 16799308 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Listeria innocua # 1 270 1 270 272 354 65.0 8e-98 MKIRRSERLIDMTQYLLDHPHTLVSLTYFADRYQSAKSSISEDLAIVKKTFKERGTGILE TIPGAAGGVRFIPEIPYEEAEQLIMDLCDRLSEQDRLLPGGYVYLSDLLGEPNLLRQVGR IIASKYLGKQIDAVMTVATKGVPIAQAVSYYLNVPFVIVRRDSKITEGSTVSVNYVSGSS ERIEKMELSKRSLKRGSKVLVVDDFMKGGGTVNGMKSMIEEFEAELVGITVFAESKFNGR RAIDDYTSLLYVEDVDTQTKTISVVPGNYFTEK >gi|307679018|gb|GL456779.1| GENE 171 165173 - 166012 1153 279 aa, chain - ## HITS:1 COG:L165709 KEGG:ns NR:ns ## COG: L165709 COG1108 # Protein_GI_number: 15674095 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Lactococcus lactis # 1 267 1 267 269 242 59.0 5e-64 MAEMLSYAFMQKAFLAALFISVIAPMLGVFLVIRRQSLMADTLSHVSLAGVALGFFFNWN PNLMTLIVVIVAAIILEYLRMIYSTYSEISIAILMSGGLALALVLMNLTGGNSAASIQSY LFGSIVTITWDQVVMLAILFVVLVLLFMLFKRPMYVLTFDEDTAHVDGLPIHWMSMLFNV ITGVAIAVMIPIAGALLISAIMVLPAAIGMRIGKGFNTVIIISVFMGLIGMLTGLTSSYY LETPPSASITLIFIGLFLLVNIYRRVVVMVQRKQKMQRN >gi|307679018|gb|GL456779.1| GENE 172 166174 - 166866 233 230 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 12 229 14 232 311 94 32 4e-18 MHYIEVENLTFYYDDEPVLEDVSYYVDPGEFVILTGENGAAKSTLIKSTLGLLKPTSGKI TVAKKNSAGEKISIGYIPQQVASFNAGFPSTVIELVRSGRFPRNRWFKPLTKKDHLHVEK ALKSVDMWEMRHKRIGELSGGQKQRISLARVFATDPDLFILDEPTTGMDEQSRNEFYQLL QHSAHEHGKAILMITHDHEDIKTYVDRQIRLVRKEDSKWRCFHMSEESYT >gi|307679018|gb|GL456779.1| GENE 173 166892 - 167845 1061 317 aa, chain - ## HITS:1 COG:lin0191 KEGG:ns NR:ns ## COG: lin0191 COG0803 # Protein_GI_number: 16799268 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Listeria innocua # 12 316 9 311 312 303 56.0 3e-82 MTKIYRRLIIGVTLAISAFLLASCGQTTQSPKEKKELTVMTTFYPMYDFTKQVVGDEGEV ELLIPAGTEPHDYEPSAKDLAKITDADVFVYNSKELETWVPNVIENLDTKKVSIVEASQS IQLMQGTEEEESGEEGHEGHNHSHELDPHVWLDPVLAQKEVTAIRDALIKKYPEKKAVFE KNTVAYLEKLTALDKEYQAAFAGAKNRTFVTQHAAFGYLAKQYGLTQEPIAGISPDQEPS PSRLAELKKYIKTNNVSVIYFEASASTKVAKTLADETGVELAVLNPLESLTQKEQEAGEN YVSVMKENLAALQKSIH >gi|307679018|gb|GL456779.1| GENE 174 168012 - 168863 725 283 aa, chain - ## HITS:1 COG:lin0229 KEGG:ns NR:ns ## COG: lin0229 COG1947 # Protein_GI_number: 16799306 # Func_class: I Lipid transport and metabolism # Function: 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase # Organism: Listeria innocua # 1 280 1 280 291 335 59.0 7e-92 MEIIERAPAKINLGLDVLHKRVDGYHEVESIFASVDLADHLTFENLEEDIIRIETDSSFL PVDRRNHVYQAVDLLKRTYNIHKGIKIYIEKRIPVAAGLAGGSSDCAAALRGLNKLWNLG LTMDELCEIGSQIGMDVPYCLRGGTAFANGRGEKIEALPTMPQCWIVLVKPRISVSTSTV FNDLAVDELHHPDIAGLRIAIENGDYTGMTQTVGNALESVTIARHPIVQQIKDRMLKYGA DAALMSGSGPTVFALCEKKTRAQRIYNGLKGFCEEVYLVRTLK >gi|307679018|gb|GL456779.1| GENE 175 169044 - 169289 306 81 aa, chain - ## HITS:1 COG:lin0228 KEGG:ns NR:ns ## COG: lin0228 COG4466 # Protein_GI_number: 16799305 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 76 1 76 85 93 60.0 1e-19 MPTTLSSIKKDLEGRIGSEIMLVAQTGRKRQTERKGILTETYPSVFVVDLDPDENSFERV SYSYSDVLTRTVEIEFIGQAV >gi|307679018|gb|GL456779.1| GENE 176 169404 - 169970 698 188 aa, chain - ## HITS:1 COG:lin0275 KEGG:ns NR:ns ## COG: lin0275 COG1595 # Protein_GI_number: 16799352 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Listeria innocua # 2 186 10 201 201 59 26.0 4e-09 MLEQIQQALAGDQEQFQALYGQYQPVIYKCMKKYYLKDYDTEDWLQEGRIVFFRTLERFD SEKQASLGKFFKRNFENHVHSLIRHQCAYKRRTDTLSISLEQRLESAGEELVDYLGTAAT DPLGQLMIQEKLAAFPTRLSSLEQQILNAYLKGYTLEEIAKVRGGTFSAVRSAYDRAKAK MKYTLENE >gi|307679018|gb|GL456779.1| GENE 177 170056 - 170586 503 176 aa, chain - ## HITS:1 COG:SPy1937 KEGG:ns NR:ns ## COG: SPy1937 COG3688 # Protein_GI_number: 15675740 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein containing a PIN domain # Organism: Streptococcus pyogenes M1 GAS # 1 173 1 172 172 149 47.0 3e-36 MKKQLLIVDGYNMIGAWPELVQLKKQERLEDARELLLSRLSNYAKYEGLEIIVVFDAQLV PGIQQTYKKYLLTVVFTKEDETADSYIERLAGEKNDRLTQVTVATSDLAEQWVVFSQGAL RTSANELYKAVQKTEKTIAIHATDIHFQQFRRNSPWNVEQLSKLSEKLEELSQKKD >gi|307679018|gb|GL456779.1| GENE 178 170601 - 171458 570 285 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 45 285 7 249 255 224 46 3e-57 MKNEKSRPFKKGKKRPERSDKRSKERNPRPATAGADGTSEELADNFVFGFHATVEALQQG RGNKLFLQEDARGEKIEQLKQAAKEQAVPVKWVPKAKLDTMSDHGVHQGMVLAITAYQYL TLEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVT KASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSGTDYRRWNTQGAIALIIGNEGR GMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYRGRNPL >gi|307679018|gb|GL456779.1| GENE 179 171448 - 171846 345 132 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 [Bacillus selenitireducens MLS10] # 5 123 11 129 141 137 55 4e-31 MRDYKQLNGLALAYVGDAIYEIYIRDYLVSLGQTKPNVLHRMATHYVSAKAQASLMQAML AGEMLTEEEEVMYKRGRNAKSHTFAKNADVTTYRVATGFESLMGYLHLTQQKERLEELIN WCIKKVGETNEK >gi|307679018|gb|GL456779.1| GENE 180 171843 - 173255 1706 470 aa, chain - ## HITS:1 COG:BS_cysS KEGG:ns NR:ns ## COG: BS_cysS COG0215 # Protein_GI_number: 16077162 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Cysteinyl-tRNA synthetase # Organism: Bacillus subtilis # 2 470 3 466 466 561 57.0 1e-160 MIKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGYE VNYVSNFTDVDDKIIKAAKELKITAPEVADRFIKAFEEDTQALNVQPATLHPRVMDHMPD ILAFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRTGVEQQLKEDP LDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLEFPHHENE IAQSEAKTGHTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQKVDPQILRFFMSTT QYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLPEDEHYLAQLNELEQRFIT EMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKLFSGWLAIFGLFFKNEELV DAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLEDTPQGTRWRRSE >gi|307679018|gb|GL456779.1| GENE 181 173248 - 173787 615 179 aa, chain - ## HITS:1 COG:SPy1944 KEGG:ns NR:ns ## COG: SPy1944 COG1045 # Protein_GI_number: 15675746 # Func_class: E Amino acid transport and metabolism # Function: Serine acetyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 173 1 173 193 234 65.0 7e-62 MSWLKRSVAAVKRNDPAARTTLEVLLTYPGLHALFWHRLSHFLYRHQLFLLAKIHAQFWR FITGVEIHPGATIGAGVFIDHGMGIVIGETAEIEEDVVLFHGVTLGGTGRDTGKRHPTVK KGAMISARAQILGPVVIGERSKIGAGAVVISDIPADATAVGVPAKVVRLNGRKVEKGHD >gi|307679018|gb|GL456779.1| GENE 182 174057 - 175514 1943 485 aa, chain - ## HITS:1 COG:lin0269 KEGG:ns NR:ns ## COG: lin0269 COG0008 # Protein_GI_number: 16799346 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Listeria innocua # 3 485 6 488 491 635 65.0 0 MTKVRVRYAPSPTGHLHIGNARTALFNYLFARHNDGEFIIRIEDTDQKRNIEDGEKSQLE NLAWLGMEWDESPAHPGEYGPYRQSERKEIYQPLIDQLLSSNRAYKCYCTPEELEAEREA QQARGEMPHYAGTCANLTPSEQAAKEAAGLEPVIRFRVPRNTEYKFDDIVKGEITFESDN IGGDFVIQKRDGMPTYNFAVAVDDHLMKISHVLRGDDHIANTPKQLMIYEAFEWTPPVFG HMTLIINSETGKKLSKRDETILQFIEQYRELGYLPEAMFNFIALLGWSPVGEEEIFSQED LIKLFDEQRLSKSPAAFDAKKLEWINNQYMKQMDLGELTDMCIPYLVADGRVEENPSPEK IEWLKQLVSLYQPQMSYAAEIVELSNLFFNEHPVLDDAAKEFLQGETVPTVLHAFKEQLE ALDVFDVPSIKAAIKAVQKETGVKGKNLFMPIRIAVSGQMHGPELGETIELLGKEKALDH LNKVL >gi|307679018|gb|GL456779.1| GENE 183 175567 - 176040 545 157 aa, chain - ## HITS:1 COG:BS_yacN KEGG:ns NR:ns ## COG: BS_yacN COG0245 # Protein_GI_number: 16077159 # Func_class: I Lipid transport and metabolism # Function: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase # Organism: Bacillus subtilis # 1 157 1 157 158 196 60.0 1e-50 MIRIGQGFDVHQLVPQRPLIIGGVTLPYEKGLLGHSDADVLTHAIIDAILGAAGLGDIGQ LFPETDPQFKNANSVNLLKKVNEKVGRSGFTIGNIDCTILAEEPKMSPYLAEMKKNLAAS CHLAVTQVNIKATTMEAMGFVGKKEGIGAIAVALLEK >gi|307679018|gb|GL456779.1| GENE 184 176059 - 177204 1463 381 aa, chain - ## HITS:1 COG:lin0266 KEGG:ns NR:ns ## COG: lin0266 COG4956 # Protein_GI_number: 16799343 # Func_class: R General function prediction only # Function: Integral membrane protein (PIN domain superfamily) # Organism: Listeria innocua # 5 362 5 357 357 375 54.0 1e-104 MQKRIITLLMIIAGASLGISLFPMAWEMAKQGNNSWLNNNFTNGLIGAIIFFILSLGLAK YIVSAVKKIEAALNEMSLTYLLFGSIGAIIGLTIGVIISIPMYNLQIPVVNSLLPILVMI ILGYLGFRMGTTRIEEWKKVFTPRQKKANTEDTEGQMLERKVEDNFHKYKILDTSVIIDG RIYDIAKTGFLEGVLLIPNFVLYELQYIADSGDSLKRVRGRRGLDILNALQKEEGISVEM YDGDFEDISEVDSKLIKLAKLLDGVVVTNDYNLNKVSEFQNVPVLNINALANAVKPVVIP GETMNVMVVKAGTERQQGVAYLDDGTMVVVEDGQHYMNEQIEVVVTSALQTAAGRMIFAK PAHAGRGINDRKDNHPKNDKN >gi|307679018|gb|GL456779.1| GENE 185 177305 - 178675 1419 456 aa, chain - ## HITS:1 COG:SPy0236 KEGG:ns NR:ns ## COG: SPy0236 COG1066 # Protein_GI_number: 15674421 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent serine protease # Organism: Streptococcus pyogenes M1 GAS # 1 455 1 452 453 633 73.0 0 MAKKAKVQFECQSCGYVSPKYLGRCPNCGQWNSMVEEVIQDTSDRRARVSLTGKKTQPQR LSEVVPKKEPRVKTELVELNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSQQLAATGGT VLYVSGEESAEQIKLRAERLGTVNETFYLYAETDMHEISRAIEKLEPDYVIIDSIQTMTQ PDVTSVAGSVSQVRETTAELLKLAKTNGIAIFIVGHVTKEGSIAGPRMLEHMVDTVLYFE GDKHHTFRILRAVKNRFGSTNEIGIFEMQTHGLVEVMNPSQVFLEERLEGATGSSIVVAM EGSRPILVEIQALVTPTMFGNAKRTTTGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAG GVKINEPAIDLALAISIASSYKEKGTSSSECFIGEIGLTGEIRRVNSIEQRVREAQKLGF TKVYVPKNNLGGWEAPEGIEIIGVSTIGETLRKVFK >gi|307679018|gb|GL456779.1| GENE 186 178754 - 179233 622 159 aa, chain - ## HITS:1 COG:L181168 KEGG:ns NR:ns ## COG: L181168 COG0756 # Protein_GI_number: 15672158 # Func_class: F Nucleotide transport and metabolism # Function: dUTPase # Organism: Lactococcus lactis # 1 157 1 149 150 156 53.0 1e-38 MKQRGFEIISKYQEEGLSVPQRATKGAAGYDFQAAETVVVPSLWKLQQAGENPKPILVKT GIKAYMPDSEYLELVSRSSNPLKRFLLLANGVGVIDRDYYNNENNEGHIMFQFLNFGYED VVIEKGERIGQGIFKPFLLADDDQVEAERTGGFGSSGQK >gi|307679018|gb|GL456779.1| GENE 187 179559 - 180374 937 271 aa, chain + ## HITS:1 COG:lin1228 KEGG:ns NR:ns ## COG: lin1228 COG0263 # Protein_GI_number: 16800297 # Func_class: E Amino acid transport and metabolism # Function: Glutamate 5-kinase # Organism: Listeria innocua # 1 269 1 269 276 334 63.0 1e-91 MRNKLQQAKRIVIKVGTSSLIYPNGNINLKAIDQLAFTLSDLSNQGKEIILVSSGAIGVG LNKLNLSVRPTTIPEQQAVAAVGQAELMNIYNQRFSTYSQQMAQVLLTRDVIEYPESRNN VTNTFEQLLKMNIIPIVNENDTVAIEELDHLTKFGDNDQLSAIVCQIVQADLLVMLSDID GFFSDNPTVNKEATLFSEINEINEDLFQLAGGKGSRFGTGGMSSKLKAAERVLANQQAMI LANGKQPKIIFEILEGKDIGTLFIKGGHESD >gi|307679018|gb|GL456779.1| GENE 188 180367 - 181614 1391 415 aa, chain + ## HITS:1 COG:lin1227 KEGG:ns NR:ns ## COG: lin1227 COG0014 # Protein_GI_number: 16800296 # Func_class: E Amino acid transport and metabolism # Function: Gamma-glutamyl phosphate reductase # Organism: Listeria innocua # 1 415 1 415 415 529 65.0 1e-150 MTDLKQLGQQAKEASYTLGLMDTRQKNTLLNKMAAAIEANAPRILQANALDLEQAATHGI SETMQDRLRLTEERITAMAEGIRQVATLPDPIGEVDKMWRNEAGLLIGQQRVPLGVIGII YESRPNVTTDAASLCFKSGNAVILRGGKEAFHSNQILVTILQEALIQEAVSPHLIQFVDD TSRETAQQLMRLNDYLDVLIPRGGANLIKTVLTTATVPVIETGTGNCHIYVDKDAQLTMA TEIIVNAKCQRPSVCNAAETLLIHQEVAEAFLPTIEKALKEFHVELRADERALAIFEEAI PATEQDWETEFLDFILAVKVVDSLDEAIQHINRYNTKHSESIISDNYFATQQFLQQVDAA AVYANASTRFTDGFEFGFGAEIGISTQKLHARGPMGLAELTSTKYVIYGNGQARS >gi|307679018|gb|GL456779.1| GENE 189 181706 - 182662 776 318 aa, chain - ## HITS:1 COG:lin0383 KEGG:ns NR:ns ## COG: lin0383 COG2378 # Protein_GI_number: 16799460 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Listeria innocua # 8 316 1 310 315 145 27.0 1e-34 MTPMEGKMKKSERLNQELFFLRTHPQFNLNQLMKTFGISKSTALRDIEALENLGVPLYVE NGRYGGYRVLNKPLLPPIYFNENEVLAIFFSLQLLKLVAESPFGHSYQQIQQKLLHSLDE PTQFKISQMSKVVYYEGIEQVEAPGNLEQLFHCILAQQVIQFNYTRYEATTKKILPTRLT ILEGYWYCSGYDVTKKAWRTYRCDFMEAIQQLNQTLDFTTEELKESYRHQQTTARTIPFK AIITEKGKEFFYKHRFDNIQLEETPTQCFLVGQIHPTETQFLANYFMGFGEEVTILEPVQ VKQAYVESIMRIQKKYQE >gi|307679018|gb|GL456779.1| GENE 190 182718 - 183185 572 155 aa, chain + ## HITS:1 COG:no KEGG:EF0035 NR:ns ## KEGG: EF0035 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 155 1 155 155 287 98.0 9e-77 MKNTQFALFMVLNGRATEALTFYQEAFAGDILFKITNQEFKERLNPSLTIPAGEEHWLSH SILQMDTFQLQLADNPLFAGMNTTPTEQLTLSLTVESRHSAKTIFEKLTCHPESCIIQEP IENEFATFYAIVKDPFGLVTQITQEKQADPTKKGS >gi|307679018|gb|GL456779.1| GENE 191 183193 - 183702 716 169 aa, chain + ## HITS:1 COG:YDR540c KEGG:ns NR:ns ## COG: YDR540c COG4283 # Protein_GI_number: 6320749 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Saccharomyces cerevisiae # 1 166 1 166 179 175 57.0 4e-44 MRTYESKEALIEAIQIASQKYLAEFAEIPETLKDHRIETVAKTPSENLAYQLGWLNLLLS WEEQEQRGLTVQTPAEGYKWNQLGALYQSFYQTYGQMSLESQLIALQDTLEKLLHWIDSL SEDELFLPQQRAWATTKAQWPLWKWIHINSVAPFTSFRTQIRKWKKACL >gi|307679018|gb|GL456779.1| GENE 192 184291 - 186861 2468 856 aa, chain + ## HITS:1 COG:SP2231 KEGG:ns NR:ns ## COG: SP2231 COG4485 # Protein_GI_number: 15902035 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 4 829 14 829 850 525 39.0 1e-148 MLASFFIPFLIMAIIYLSIGIYPGSSRSVLASDAFSQFSNFHASFNNVLHGKQSLFYTWN ASLGLNYLSLISYYLGGLFTPLVFFFNNQNMPDALYFLTLLKIGSAGLSFWFLAKQTFKI PKWSHVTLSVSYALMSFIVAHSELIMWLDAFIYLPLVILGIHRLMDQRKPTLLFVSYFLL FITNYYFGFMIGLFSFLYYFARTFTDWQRYKSRIVAYFTTSLLAGGASMIMVLPAVLDLR TNGETLSEITTFKTEATAFLDIIMKNMIGVYDTTKYGSIPFIYIGLLPLIFCLFYFVTKE IPLKNKLLFGSLFVLLIASFYITPLNLFWHGMHAPNMFLFRYSFLFSFLVILLAGYGWEK FEKDDLGVLSGLILILLAIFALAMGTKGATSYTYVTLTSFVLTATFLLLYFFGIAFYQLK KAPMQYLVILLLLLVSGEAIINTRAMVTGILDDWNYASRSLYSEPYPDLKNLVDQTKKEN DTFYRLENLNGVSANDGINYGYSGISMFSSVRNRHSSTYLNALGFRSRGTNLNIRYQNNT LLMDALMGIKYNIAENNPMKFGFERQAAAGKYQLYRNENALPLGFLADKEIYNVRQPIND NLGSQTNLLNALANTNERYFTFYQPTMTLQNNVTITQNTAGVTFTEKQHNVAKEISYTVN VPANTQAYLSLFPTDFAQLESSTATVTVNGSSQQSQIGITGQYYNLGYYPKDTTVNFKVS FYGTKAVSFVQPQVVGLNTNAFEKAISAVQEKGVDLTTGKRSASGTFTADKDQVLVTTIP YDKGWRVKIDGKKVTPKAFKDAFLSVPVSAGTHTIQFSYLPEGLIPGIVLFVLCTGGFVA YVTLIPARRNRKKEDK >gi|307679018|gb|GL456779.1| GENE 193 187142 - 187537 100 131 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312901266|ref|ZP_07760549.1| ## NR: gi|312901266|ref|ZP_07760549.1| hypothetical protein HMPREF9510_02059 [Enterococcus faecalis TX0470] hypothetical protein HMPREF9510_02059 [Enterococcus faecalis TX0470] hypothetical protein HMPREF9495_02569 [Enterococcus faecalis TX2141] ABC superfamily ATP binding cassette transporter permease subunit [Enterococcus faecalis OG1RF] # 1 131 41 171 171 148 100.0 1e-34 MIEESSKLLNISNGEFNFFMIVIVIIANLCIFFVTFIILKIVLLIFGFKKNYNQDIFISL LLSVSVVNLLVLFISEIVTIDRLPLSISTSSIEVIIFLLLFYSNTKDVKATKLLFFGKLW LLLFNIVSLVV >gi|307679018|gb|GL456779.1| GENE 194 188199 - 190790 2662 863 aa, chain - ## HITS:1 COG:lin1803_2 KEGG:ns NR:ns ## COG: lin1803_2 COG2898 # Protein_GI_number: 16800871 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 257 849 1 590 613 413 38.0 1e-115 MKKNISQLTQWLKEHSLLLKLIFLGSVLVFVANQVTHIAQGMTWADIFSTMEQQSTGRLI GMVLAGLLGVIPMLLYDYVVVKLLEKEGKPPMKRMDWLTSAWVTNTINNLAGFGGVVGAT LRINFYGKDVPRGKVVATVSKVALFLISGLSILSFVAFVDLFFIRTQNVFREYWVWLLLG SLIAPALWFFTYLKQRTLFKTFFPKAVLLLFGASLGQWLGGMFAFLMIGRLMQVPVSMVS VYPMFVIATLIGMLTMVPGGMGTFDVLMILGLSQLGIDRSQAVVWLLYYRLFYYVTPFMT GVILFLQQAGMKVNQFFDNLPRLFSQKVAHFILVAALYFAGIMMVLLSTVTNLSNVSRLF QVLLPFSFNFLDQTLNLFVGFLLLGLARGISMKVKKAYWPTIILLGFCIVNTVARTTSWQ LIAVYAVILLAVILARKEFYREKFVYSWGALTVDSILFGCLFIGYAVAGYYAARPAGGNQ VINHFLLFPSDDVWFNGLIGLSISLIGLFFLYQYLAETTVTLGEGFEEARLTRFLEKFGG NEGSQFLYLKDYGHFYYQEEGEDQVLFGFQMKFNKCFVLADPIGQREKWTAATLAFMDQA DLLGYQLVFYRISEEYVMNLHDCGFEFMKVGEEGLIQFDEPSTVNQTAWTETVTEKIAAE AADFQFEFYPETISDALYQELERVSADWSRNQKERYFIGGRLDPEYLKCSSVGLVRQKQT VIGFITGKEMEKGKSISYDLLRIRSEAPAFTREYLFTHFIETYQQQGYQLIDIGMAPLAN VGESKYSFLKERFVNIFYKYSYQIYAFQDTRKRKEQYVTSWQPRYFAYPKRTSVLFAFVQ LSLLITKGRHQSVSLVEEAMTEI >gi|307679018|gb|GL456779.1| GENE 195 190983 - 191363 476 126 aa, chain - ## HITS:1 COG:SP1567 KEGG:ns NR:ns ## COG: SP1567 COG0251 # Protein_GI_number: 15901410 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Streptococcus pneumoniae TIGR4 # 2 124 3 125 126 156 63.0 1e-38 MKTIKTKQAPQAIGPYSQAKIVNGLLITSGQIPLDPETGKVVGTTIKEQTNQVLKNIQGI LTEAGSDFAHVVKTTCYLQNMADFTAFNEVYAEYFSAEYPARTTIEISKLPMDVLVEIEI IAEVVA >gi|307679018|gb|GL456779.1| GENE 196 191463 - 192668 964 401 aa, chain - ## HITS:1 COG:malY KEGG:ns NR:ns ## COG: malY COG1168 # Protein_GI_number: 16129580 # Func_class: E Amino acid transport and metabolism # Function: Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities # Organism: Escherichia coli K12 # 3 388 4 389 390 349 44.0 5e-96 MSFDKAIDRRGTYCTQWDFVEDRFGEADLLPFTISDTDFAVPEAVLATLQERLKHPVFGY TRWNHPQLKEAIQTWYQTRFQTKIEEHWIMYTPTVIYGISALIQLLTNEGEGIILQTPAY DAFFKVIQENKRQVVANELLYQEKRYSIDFIDLEKKLAQPENRCLLLCSPHNPTGRVWEQ WELERMVSLCQQYDVFLLSDEIHMDIVNKGQVHRPITQFDYKKSAIITSGTKTFNFPGLI FAYALIPDNELCDAFQLKLKNADGLSSTSILGMLATMTAYQKCGTWVDELNDYLAENQRY VKDFLQTYLPKIKVTKLEATYLMWLDVSAAVPDVARLQEALVSVGKVAIMDGSIYGGNGQ RFLRLNIGCSQAKLHEGLERMRQGFEAVLQKDGTASALGNN >gi|307679018|gb|GL456779.1| GENE 197 192692 - 194260 1708 522 aa, chain - ## HITS:1 COG:malX_1 KEGG:ns NR:ns ## COG: malX_1 COG1263 # Protein_GI_number: 16129579 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Escherichia coli K12 # 7 425 8 430 450 498 61.0 1e-140 MAVKKKKATFWEFFQGLGKTFMLPVALLAFMGILLGLGSSFSSESMIETVPFLGKPAVKI IFQFMSTIGGFAFAYLPVMFAMAIPLGLVRKEKGIAAFSGFVGYTVMNLAINFYLVQTNR LVDPEQLREAGQGMVFGIQTIEMGVLGGIIAGLIVYKLHNRFYTVQLPDSFAFFSGARFV PIITSLVMAFVGLVIPLVWPLFALMIMAIGQLIQRSGIFGPFLFGSGERLLLPFGLHHIL VSMIRFTEAGGSAVVAGKEVFGALNIFYAELQNNLPISPSATAFLSQGKMPTFIFGLPAA ALAMYHTAAPANRHKIKGLLLSGVIATAITGITEPIEFLFLFISPLLWLFHVIMTGLGFM VMALLGVVIGNTDGGLLDFVIFGLLQGTYTKWWWVLIVGAIWFVVYYFVFKTVIVTFDLK TPGRDKVLDETEYTDQEVQYKKTSGYDAPGILAALGGQENIQAIDNCITRLRLVLADANK VDDDKLKQLGALGVVHLDAQNVQVIIGTKVTTVRNQLEMILG >gi|307679018|gb|GL456779.1| GENE 198 194409 - 195179 713 256 aa, chain - ## HITS:1 COG:BH2675 KEGG:ns NR:ns ## COG: BH2675 COG1737 # Protein_GI_number: 15615238 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 17 245 22 259 287 90 28.0 4e-18 MTTEGLIALLEKKRNHLSKIENQVLDYILTHMTEISSQTIYEVAQALFVSTATISRTAKH LGYRGFQELKYAIVQSVQSESTESDSRSFQAITQQLIANVQDSFQQMDEAKVAEMLKMIE RANTIEVFGVGGSFPICTDFARKLTFLGKKAYARSDWDEQAAAVKNLDGQDLAIFVSYTG ETKGILAYARVAQEQQVPMISLISTKGSTLEKLSTTTLFAKGTTRYHQRVDLSSRIAVIC LFDTVLLMYAEAKQPR >gi|307679018|gb|GL456779.1| GENE 199 195377 - 195580 190 67 aa, chain + ## HITS:1 COG:no KEGG:EF0026 NR:ns ## KEGG: EF0026 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 67 1 67 67 89 98.0 6e-17 MNNQRPMFINILLVVLLFLVVGSLFSAVVGIVGSLLWLAVKILVPVAIIVWLVRTISGNN GNCRRRY >gi|307679018|gb|GL456779.1| GENE 200 195627 - 196154 655 175 aa, chain - ## HITS:1 COG:SA2491 KEGG:ns NR:ns ## COG: SA2491 COG3247 # Protein_GI_number: 15928285 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 3 174 2 169 170 77 33.0 9e-15 MEQRQHHGMDWGSLVLGILFVLTALISFQNPAGNLIAIVMVFAIFAIIKGIFEIFVRNRM KELLGYKAYAPIILGIIDILIGVYLLFNLNIGVAVLPFVFAIWFLFDSIFGLFTLDFAKR VSTGYFWFTLIVDVLGIILGVMLLFNPLSSALTLSFLVGFYFMMFGISNIVYAFR >gi|307679018|gb|GL456779.1| GENE 201 196402 - 196779 426 125 aa, chain - ## HITS:1 COG:CAP0069 KEGG:ns NR:ns ## COG: CAP0069 COG4687 # Protein_GI_number: 15004773 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 123 12 134 135 194 78.0 5e-50 MVQSLNTKVDLVIDATAFTGLTDYGQIMIGDRGFEFYHAKDPRKFIQIPWEEVDYVLASV MFKGKWIPRYAIQTKKNGTYTFASKEPKRVLRAIREYVDPDHMVQSLSFFDVIKRGILSI GKKKK >gi|307679018|gb|GL456779.1| GENE 202 196941 - 197852 1341 303 aa, chain - ## HITS:1 COG:lin0145 KEGG:ns NR:ns ## COG: lin0145 COG3716 # Protein_GI_number: 16799222 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Listeria innocua # 1 303 1 303 303 502 86.0 1e-142 MAEKIQLTKKDRLAVAWRSTFIQGSWNYERMQNGGWAFSMIPAIKKLYKTKEERSAALKR HLEFFNTHPYIASPILGVTLALEEERANGAPVDDVAIQGVKVGMMGPLAGVGDPVFWFTV RPMLGALGASLAMGGNILGPILFFVAWNLIRWSFMWYTQEFGYKAGSKITDDLSGGLLQD ITKGASILGMFVLAALVQRWVSIKFLPIVSQVKLDKGAYIEWDKLPAGGEGMHKAFEQVN QGLALSPTKVTTLQDNLDQLIPGLAPLLLTFLCMWLLKKKVSPIVIILGLFVVGVVGHLI GLL >gi|307679018|gb|GL456779.1| GENE 203 197875 - 198678 1129 267 aa, chain - ## HITS:1 COG:lin0144 KEGG:ns NR:ns ## COG: lin0144 COG3715 # Protein_GI_number: 16799221 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Listeria innocua # 1 267 1 268 268 332 86.0 4e-91 MSVISIILVLLVAFLAGMEGILDEFQFHQPLVACTLIGLVTGNLEAGIVLGGTLQMIALG WANIGAAVAPDAALASVASAIILVLGGQGVKGVPSAIAIAVPLAVAGLFLTMIVRTVAVP IVHMMDAAAEKGNIKQVEMLHIFAVCLQGIRIAIPAGALLFIPADTVRNFLESMPAWLTD GMAIGGGMVVAVGYALVINMMATKEVWPFFIIGFVVAAISQLTLIALGALGVALALIYLN LSKMGGSSNSNGGGNSGDPLGDILNDY >gi|307679018|gb|GL456779.1| GENE 204 198713 - 199705 1312 330 aa, chain - ## HITS:1 COG:lin0143_2 KEGG:ns NR:ns ## COG: lin0143_2 COG3444 # Protein_GI_number: 16799220 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Listeria innocua # 166 327 1 162 165 243 84.0 3e-64 MVGIILASHGEFAEGILQSGAMIFGEQENVKAVTLMPSEGPDDVKAKMQEAIASFDNQDE VLFLVDLWGGTPFNQANSLLEDHKDKWAIVAGMNLPMVIEAYASRFSMESAQEIATHILE TAKDGVKVKPEELQPAEAPKAAATEDAQPKGSLPPGTVVGDGKIKFVLARIDSRLLHGQV ATAWTKATQPNRIIVVSDAVAKDDLRKKLIEQAAPPGVKANVIPISKMIEVAKDPRFGNT KALLLFENPEDVLKVVEGGVEIPEVNVGSMAHSVGKVVVSKVLSMGQEDVDTFDELKAKG IKFDVRKVPNDSKANMDEILKKAKNELANA >gi|307679018|gb|GL456779.1| GENE 205 199940 - 200452 586 170 aa, chain - ## HITS:1 COG:lin0776 KEGG:ns NR:ns ## COG: lin0776 COG3444 # Protein_GI_number: 16799850 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Listeria innocua # 3 163 1 161 161 190 63.0 1e-48 MVMDIRLARIDDRLIHGQVATVWAKLTNINRILVVSDSVAHDNLRKALLVQAAPPGVKVN VITVQKMIDVYPDPRFDSFRAMLLFTNPLDVKRVVEGGVQLTSVNIGGMSFSTGKRMITN AVAVDANDLKAFLFLNEQGIELEIRKVAADSQVNLMDLLKKERSKENNAS >gi|307679018|gb|GL456779.1| GENE 206 200655 - 203540 2890 961 aa, chain - ## HITS:1 COG:lin0778_1 KEGG:ns NR:ns ## COG: lin0778_1 COG1221 # Protein_GI_number: 16799852 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Listeria innocua # 1 469 1 461 464 408 45.0 1e-113 MKRIEKIYQYVKEQTKNLTPMTLTSDAGVTTQEISERLNIQRTNASKDLNQLVREGRLKK LSGRPVKYVAQVAFQHRPLTKPVKSYREKSMDHSTKTFIEPLVEPVVTTSKTPEVEDIFK KIIGSAGSMKTPVEQAKAAILYPPKGLNCLITGPTGSGKTYFAHAMFQFAKLNQIVAKEK EFVVFNCADYAHNPELLMSHLFGYVEGAFTGATKAKEGIIDEADGSILFLDEVHRLPPEG QEMIFYFMDHGVYARLGETVKSHHADVRIICATTENPTSSLLNTFVRRIPIIIQLPNFSD RPAKEKIDLLKVMVSMEAARIQRRISLSEDVVKALIGSVSYGNVGQLKSNVQLVTARGFL NQMEQEELMITMDELTDNIKEGIMQLASNREVLSELSKYLEPQLVVSPNESLVAIQSDAY ELPYNLYEIIGDKAALLKADGLDQELINNFITTDINVHLKSFYKDYGFTFDTENKLAEIV DQRIIDVTKKIYNFAAKRLSYSFQPNFIYAMSLHISSFLKRIQLGKDPKHPLNESIRNMV LDYPTEFETAKEIKNIIESSYQMEIPESESYYLAVLLISLRENPEAGRIGIVVAAHGNST ASSMVQVVSQLLNVDNLKAVDMPLDMPPKEALRKIVEAVGEVNEENGVLLLVDMGSLSTF SEEIVRQTGIDVRTVDMVTTPIVLEAARKTALIDTQLETLHESLKNFHGYADIRQSETKQ IIENWKTRAIIAICASGEGTARRMKELIEEAVLPQIDWHLEVIPLSIVNMKEVLPKIQED YEIIATTGITNPKIGVPYISMENFFSGEAEKIIQQLLAERKEEVMNKPLDEAAAKEICLK YMEQSFTFINGKKIIDLLWSFAKNIQTQLAMPEEYTFYINLIMHTSGMLERILRNDTLTV SEKELGRLVQEPIYPVIVASIETMEEALNMDVPAEEVYFIAQLVKNAQCIEDKITEIDTL D >gi|307679018|gb|GL456779.1| GENE 207 203793 - 205424 1928 543 aa, chain + ## HITS:1 COG:BS_ykpA KEGG:ns NR:ns ## COG: BS_ykpA COG0488 # Protein_GI_number: 16078507 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Bacillus subtilis # 1 540 1 539 540 798 72.0 0 MITVNDVSLQFPDRKLFEEVNIKFTPGNCYGLIGANGAGKSTFLKILSGEIQPTTGVVSM GPNERLATLKQNHFDYEDYTVLETVIMGHKRLYEVMKEKDAIYMKEDFSDEDGIRAAELE GEFAELDGWEAEPEAAVLLQGLNIPEELHDQKMSELTAGQKVKVLLAQSLFGKPDVLLLD EPTNGLDTRSINWLEEFLINFENTVIVVSHDRHFLNKVCTHMADLDFSKIKLYVGNYDFW LESSQLATKLQAQSNAKKEEQIKELQDFIARFSANASKSKQATSRKKMLDKITLDDIQPS SRRYPFVGFTPEREIGNDLLQVENVSVTIDGKKILDNISFNLTKDDKVAFIADSDITTTT LFKVIMGEITPDTGSVRWGVTTSQAYLPKDNSKDFEEPLTILDWLRQFAGKEEDDNTFLR SFLGRMLFSGEEVLKPVNVLSGGEKVRVMLSKLMLSKANVLVLDDPTNHLDLESITALND GLMAFTGSILFASHDHQFIQTLANRIIAVSDKGVIDRAETTYDEFLENPEIQKQMDILFS SDY Prediction of potential genes in microbial genomes Time: Tue Jul 5 18:53:58 2011 Seq name: gi|307679017|gb|GL456780.1| Enterococcus faecalis TX0312 genomic scaffold Scfld75, whole genome shotgun sequence Length of sequence - 639 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - TRNA 4 - 74 71.8 # Gly TCC 0 0 - TRNA 76 - 152 88.4 # Asp GTC 0 0 - TRNA 191 - 264 74.1 # Met CAT 0 0 - TRNA 298 - 387 62.1 # Ser TGA 0 0 - TRNA 421 - 494 89.2 # Met CAT 0 0 - TRNA 515 - 588 77.6 # Met CAT 0 0 Prediction of potential genes in microbial genomes Time: Tue Jul 5 18:53:58 2011 Seq name: gi|307679016|gb|GL456781.1| Enterococcus faecalis TX0312 genomic scaffold Scfld76, whole genome shotgun sequence Length of sequence - 728 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 727 651 ## EF3252 hypothetical protein Predicted protein(s) >gi|307679016|gb|GL456781.1| GENE 1 1 - 727 651 242 aa, chain + ## HITS:1 COG:no KEGG:EF3252 NR:ns ## KEGG: EF3252 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 242 634 876 1265 325 77.0 1e-87 KGKTKPNTLTTTKAPSYAVTYDDNDDLNVVYEEETVTTLYPSINMNFVNEKGGTFTPALT FSGKYYAQSTSASLRTDLYDVTSKNNGSGQYTVSINNGSMPLSQDLLKKYNNGQPISATN RLRFNVDKLTINQQLKYVDTIQVDTAQSSSLNYYGHKYTSGSSTIFDPNIAPTEYNMTTE QINSLNFSSDGTYFSNANNRFFNMHLGYSSSGGSSLLMMALFNENPVNQTKLVYKVTRKQ VT Prediction of potential genes in microbial genomes Time: Tue Jul 5 18:54:51 2011 Seq name: gi|307679015|gb|GL456782.1| Enterococcus faecalis TX0312 genomic scaffold Scfld79, whole genome shotgun sequence Length of sequence - 168920 bp Number of predicted genes - 166, with homology - 162 Number of transcription units - 79, operones - 44 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 1/0.263 - CDS 59 - 1108 1275 ## COG0673 Predicted dehydrogenases and related proteins 2 1 Op 2 . - CDS 1133 - 2566 2033 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase - Prom 2657 - 2716 7.1 + Prom 2724 - 2783 8.8 3 2 Tu 1 . + CDS 2809 - 3522 839 ## COG2188 Transcriptional regulators + Prom 3665 - 3724 5.9 4 3 Tu 1 . + CDS 3793 - 4323 598 ## EF1241 hypothetical protein + Term 4545 - 4579 -0.8 - Term 4298 - 4345 8.4 5 4 Op 1 2/0.105 - CDS 4356 - 5321 956 ## COG1609 Transcriptional regulators 6 4 Op 2 1/0.263 - CDS 5337 - 8612 3079 ## COG3459 Cellobiose phosphorylase 7 4 Op 3 . - CDS 8630 - 10780 2519 ## COG1472 Beta-glucosidase-related glycosidases 8 4 Op 4 . - CDS 10785 - 11549 759 ## COG3568 Metal-dependent hydrolase 9 4 Op 5 . - CDS 11530 - 12447 742 ## COG3458 Acetyl esterase (deacetylase) 10 4 Op 6 . - CDS 12440 - 13033 497 ## EF1235 hypothetical protein 11 4 Op 7 14/0.000 - CDS 13090 - 14688 2243 ## COG1653 ABC-type sugar transport system, periplasmic component 12 4 Op 8 7/0.000 - CDS 14706 - 15587 746 ## COG0395 ABC-type sugar transport system, permease component 13 4 Op 9 . - CDS 15602 - 16513 1020 ## COG4209 ABC-type polysaccharide transport system, permease component - Prom 16550 - 16609 10.9 - Term 16769 - 16801 3.2 14 5 Tu 1 . - CDS 16805 - 17629 905 ## COG1408 Predicted phosphohydrolases - Prom 17767 - 17826 6.4 - Term 17772 - 17821 14.2 15 6 Op 1 . - CDS 17837 - 17932 138 ## 16 6 Op 2 . - CDS 17953 - 18636 496 ## EF1229 hypothetical protein 17 6 Op 3 . - CDS 18578 - 20068 1063 ## EF1228 hypothetical protein - Prom 20194 - 20253 7.0 - Term 20205 - 20240 5.2 18 7 Op 1 1/0.263 - CDS 20480 - 21736 1391 ## COG0431 Predicted flavoprotein 19 7 Op 2 2/0.105 - CDS 21755 - 22363 750 ## COG0431 Predicted flavoprotein 20 7 Op 3 . - CDS 22390 - 23325 835 ## COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis - Prom 23376 - 23435 10.6 - Term 23428 - 23468 5.1 21 8 Tu 1 . - CDS 23545 - 24414 842 ## EF1224 Cro/CI family transcriptional regulator - Prom 24464 - 24523 9.2 - Term 24502 - 24543 4.0 22 9 Op 1 . - CDS 24620 - 25948 1192 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 23 9 Op 2 . - CDS 25932 - 27671 1704 ## COG1001 Adenine deaminase 24 9 Op 3 13/0.000 - CDS 27692 - 28756 1478 ## COG0687 Spermidine/putrescine-binding periplasmic protein 25 9 Op 4 8/0.000 - CDS 28783 - 29823 1267 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components 26 9 Op 5 36/0.000 - CDS 29862 - 30641 937 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 27 9 Op 6 . - CDS 30634 - 31470 869 ## COG1176 ABC-type spermidine/putrescine transport system, permease component I - Prom 31617 - 31676 6.9 - Term 31612 - 31660 9.3 28 10 Tu 1 . - CDS 31679 - 32083 385 ## EF1217 putative lipoprotein - Prom 32130 - 32189 4.9 + Prom 32248 - 32307 14.4 29 11 Tu 1 . + CDS 32332 - 33051 801 ## EF1216 hypothetical protein + Term 33058 - 33115 6.6 - Term 33050 - 33099 9.3 30 12 Tu 1 . - CDS 33165 - 34247 1062 ## EF1215 hypothetical protein - Prom 34271 - 34330 12.6 - Term 34311 - 34361 16.3 31 13 Op 1 3/0.053 - CDS 34388 - 35092 822 ## COG3527 Alpha-acetolactate decarboxylase 32 13 Op 2 . - CDS 35104 - 36756 2019 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] - Prom 36791 - 36850 7.7 + Prom 36907 - 36966 6.4 33 14 Tu 1 . + CDS 37034 - 37945 1268 ## COG1316 Transcriptional regulator + Term 37949 - 37997 7.2 - Term 37932 - 37990 17.6 34 15 Tu 1 . - CDS 37998 - 39341 1970 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases - Prom 39466 - 39525 8.3 - Term 39407 - 39466 8.4 35 16 Op 1 9/0.000 - CDS 39527 - 40219 471 ## PROTEIN SUPPORTED gi|149011191|ref|ZP_01832496.1| 30S ribosomal protein S9 36 16 Op 2 . - CDS 40200 - 41750 1647 ## COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism - Prom 41771 - 41830 8.8 + Prom 41813 - 41872 6.7 37 17 Op 1 3/0.053 + CDS 41898 - 43223 1551 ## COG3493 Na+/citrate symporter 38 17 Op 2 . + CDS 43255 - 44424 1504 ## COG0281 Malic enzyme + Term 44438 - 44483 6.5 - Term 44426 - 44470 10.1 39 18 Tu 1 . - CDS 44497 - 45345 1026 ## MPTP_1291 Cro/CI family transcriptional regulator - Prom 45571 - 45630 8.8 + Prom 45362 - 45421 9.1 40 19 Tu 1 . + CDS 45445 - 45507 184 ## + Term 45537 - 45576 7.5 - Term 45758 - 45803 8.0 41 20 Op 1 7/0.000 - CDS 45817 - 46122 533 ## COG3906 Uncharacterized protein conserved in bacteria 42 20 Op 2 6/0.000 - CDS 46160 - 46573 476 ## COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) 43 20 Op 3 . - CDS 46579 - 46848 491 ## COG4472 Uncharacterized protein conserved in bacteria - Prom 46992 - 47051 9.9 44 21 Op 1 12/0.000 + CDS 47284 - 48036 838 ## COG2966 Uncharacterized conserved protein 45 21 Op 2 . + CDS 48051 - 48542 507 ## COG3610 Uncharacterized conserved protein + Term 48554 - 48600 11.1 - Term 48542 - 48588 11.1 46 22 Op 1 7/0.000 - CDS 48594 - 49460 945 ## COG3689 Predicted membrane protein 47 22 Op 2 . - CDS 49479 - 50393 988 ## COG0701 Predicted permeases - Prom 50418 - 50477 6.6 - Term 50525 - 50580 12.2 48 23 Op 1 4/0.000 - CDS 50604 - 51410 1138 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I 49 23 Op 2 4/0.000 - CDS 51467 - 52321 761 ## COG4853 Uncharacterized protein conserved in bacteria 50 23 Op 3 4/0.000 - CDS 52321 - 53628 1006 ## COG4863 Uncharacterized protein conserved in bacteria 51 23 Op 4 8/0.000 - CDS 53628 - 55457 2061 ## COG5002 Signal transduction histidine kinase 52 23 Op 5 . - CDS 55464 - 56168 967 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 56268 - 56327 6.6 - Term 56270 - 56336 16.8 53 24 Tu 1 . - CDS 56342 - 57007 966 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) - Prom 57099 - 57158 6.0 - Term 57100 - 57160 17.0 54 25 Op 1 . - CDS 57161 - 58021 1167 ## COG1307 Uncharacterized protein conserved in bacteria 55 25 Op 2 . - CDS 58014 - 58583 705 ## EF1190 hypothetical protein - Prom 58624 - 58683 6.3 - Term 58655 - 58708 9.6 56 26 Op 1 3/0.053 - CDS 58710 - 59348 512 ## COG4478 Predicted membrane protein 57 26 Op 2 1/0.263 - CDS 59351 - 60121 1096 ## COG0647 Predicted sugar phosphatases of the HAD superfamily 58 26 Op 3 2/0.105 - CDS 60127 - 60756 828 ## COG4470 Uncharacterized protein conserved in bacteria 59 26 Op 4 . - CDS 60791 - 62173 1532 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases - Prom 62200 - 62259 5.3 - Term 62232 - 62282 13.0 60 27 Op 1 9/0.000 - CDS 62298 - 63986 1965 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 61 27 Op 2 3/0.053 - CDS 64017 - 64889 956 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase 62 27 Op 3 . - CDS 64923 - 65990 1246 ## COG0136 Aspartate-semialdehyde dehydrogenase - Prom 66171 - 66230 8.3 + Prom 66052 - 66111 10.6 63 28 Op 1 . + CDS 66197 - 66655 746 ## COG1854 LuxS protein involved in autoinducer AI2 synthesis + Term 66675 - 66717 5.4 64 28 Op 2 . + CDS 66739 - 67473 832 ## COG0778 Nitroreductase + Term 67475 - 67535 24.5 - Term 67468 - 67518 19.2 65 29 Op 1 . - CDS 67531 - 67779 498 ## EF1180 hypothetical protein - Prom 67806 - 67865 4.6 66 29 Op 2 . - CDS 67870 - 68748 1223 ## COG1940 Transcriptional regulator/sugar kinase - Prom 68818 - 68877 5.7 - Term 68920 - 68965 7.6 67 30 Op 1 . - CDS 68974 - 69186 232 ## EF1177 hypothetical protein 68 30 Op 2 . - CDS 69179 - 70243 764 ## EF1176 hypothetical protein - Prom 70276 - 70335 3.9 - Term 70409 - 70448 8.4 69 31 Op 1 9/0.000 - CDS 70481 - 70750 480 ## PROTEIN SUPPORTED gi|29375747|ref|NP_814901.1| ribosomal protein L31 70 31 Op 2 1/0.263 - CDS 70851 - 72125 1273 ## COG1158 Transcription termination factor 71 31 Op 3 1/0.263 - CDS 72140 - 73432 1909 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase - Prom 73521 - 73580 11.2 - Term 73553 - 73587 5.2 72 32 Tu 1 . - CDS 73668 - 74537 1384 ## COG0191 Fructose/tagatose bisphosphate aldolase - Prom 74654 - 74713 6.9 73 33 Tu 1 . - CDS 74740 - 75696 928 ## COG1284 Uncharacterized conserved protein - Prom 75737 - 75796 5.9 + Prom 75849 - 75908 4.3 74 34 Tu 1 . + CDS 75932 - 76426 731 ## COG1666 Uncharacterized protein conserved in bacteria + Term 76432 - 76474 10.1 75 35 Op 1 . - CDS 76423 - 77127 749 ## EF1164 HD domain-containing protein 76 35 Op 2 . - CDS 77149 - 78114 1131 ## COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D 77 35 Op 3 . - CDS 78111 - 80492 2000 ## COG1199 Rad3-related DNA helicases - Prom 80513 - 80572 3.3 - Term 80536 - 80593 14.5 78 36 Op 1 . - CDS 80610 - 81128 589 ## EF1161 hypothetical protein 79 36 Op 2 10/0.000 - CDS 81146 - 82501 1492 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 80 36 Op 3 . - CDS 82520 - 82849 546 ## COG1440 Phosphotransferase system cellobiose-specific component IIB 81 36 Op 4 . - CDS 82869 - 83822 1218 ## COG1446 Asparaginase - Prom 83856 - 83915 10.3 82 37 Op 1 . - CDS 83992 - 85290 1338 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 83 37 Op 2 . - CDS 85287 - 86051 705 ## COG2188 Transcriptional regulators - Prom 86147 - 86206 7.5 - Term 86104 - 86163 14.4 84 38 Op 1 6/0.000 - CDS 86208 - 86855 654 ## COG0177 Predicted EndoIII-related endonuclease 85 38 Op 2 . - CDS 86870 - 87586 941 ## COG3935 Putative primosome component and related proteins 86 38 Op 3 1/0.263 - CDS 87619 - 89115 1789 ## COG2317 Zn-dependent carboxypeptidase 87 38 Op 4 . - CDS 89134 - 90297 1446 ## COG0116 Predicted N6-adenine-specific DNA methylase - Prom 90449 - 90508 7.1 + Prom 90723 - 90782 2.5 88 39 Tu 1 . + CDS 90809 - 90988 111 ## - Term 90817 - 90853 -0.3 89 40 Op 1 6/0.000 - CDS 91011 - 91421 572 ## COG3599 Cell division initiation protein - Prom 91453 - 91512 2.2 90 40 Op 2 . - CDS 91515 - 92057 594 ## COG4474 Uncharacterized protein conserved in bacteria - Prom 92149 - 92208 5.1 + Prom 91999 - 92058 3.7 91 41 Op 1 7/0.000 + CDS 92120 - 92737 537 ## COG3331 Penicillin-binding protein-related factor A, putative recombinase 92 41 Op 2 . + CDS 92779 - 95115 2546 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) + Term 95119 - 95158 11.1 - Term 95149 - 95191 9.1 93 42 Tu 1 . - CDS 95199 - 96809 2061 ## COG0504 CTP synthase (UTP-ammonia lyase) - Prom 96980 - 97039 7.6 - Term 97068 - 97105 6.4 94 43 Op 1 . - CDS 97117 - 97734 952 ## COG3343 DNA-directed RNA polymerase, delta subunit - Term 97764 - 97809 1.1 95 43 Op 2 . - CDS 97811 - 98248 679 ## COG4506 Uncharacterized protein conserved in bacteria - Prom 98488 - 98547 8.1 + Prom 98427 - 98486 5.5 96 44 Op 1 1/0.263 + CDS 98544 - 99395 819 ## COG0095 Lipoate-protein ligase A 97 44 Op 2 3/0.053 + CDS 99392 - 100762 1427 ## COG1078 HD superfamily phosphohydrolases 98 44 Op 3 . + CDS 100781 - 101593 1180 ## COG0561 Predicted hydrolases of the HAD superfamily + Term 101607 - 101666 16.3 - Term 101599 - 101647 11.0 99 45 Tu 1 . - CDS 101657 - 102103 437 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - Prom 102211 - 102270 5.7 + Prom 102156 - 102215 3.0 100 46 Tu 1 . + CDS 102246 - 102626 460 ## PROTEIN SUPPORTED gi|148984704|ref|ZP_01817972.1| 50S ribosomal protein L20 + Term 102675 - 102706 3.1 + Prom 102680 - 102739 5.6 101 47 Tu 1 . + CDS 102768 - 103490 772 ## COG2071 Predicted glutamine amidotransferases + Term 103491 - 103540 9.6 - Term 103474 - 103534 6.2 102 48 Op 1 . - CDS 103541 - 104365 1076 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase 103 48 Op 2 . - CDS 104442 - 104804 88 ## EF1137 hypothetical protein - Prom 104846 - 104905 15.8 + Prom 104786 - 104845 5.1 104 49 Tu 1 . + CDS 104974 - 105894 1143 ## COG0668 Small-conductance mechanosensitive channel + Term 105899 - 105945 10.3 - Term 105887 - 105933 10.3 105 50 Op 1 6/0.000 - CDS 105939 - 107066 1246 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase - Term 107089 - 107130 5.0 106 50 Op 2 . - CDS 107145 - 107846 964 ## COG2171 Tetrahydrodipicolinate N-succinyltransferase - Prom 107866 - 107925 3.2 107 50 Op 3 . - CDS 107927 - 108415 692 ## COG0517 FOG: CBS domain - Prom 108564 - 108623 9.6 - Term 108563 - 108614 13.1 108 51 Op 1 8/0.000 - CDS 108672 - 109382 622 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases 109 51 Op 2 9/0.000 - CDS 109372 - 110232 720 ## COG3623 Putative L-xylulose-5-phosphate 3-epimerase 110 51 Op 3 . - CDS 110237 - 110875 785 ## COG0269 3-hexulose-6-phosphate synthase and related proteins 111 51 Op 4 . - CDS 110889 - 111188 423 ## EF1128 phosphotransferase enzyme II, B compnent SgaB 112 51 Op 5 2/0.105 - CDS 111203 - 112690 1489 ## COG3037 Uncharacterized protein conserved in bacteria 113 51 Op 6 . - CDS 112703 - 113161 497 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 114 51 Op 7 . - CDS 113179 - 114246 1049 ## COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold - Prom 114286 - 114345 4.8 + Prom 114337 - 114396 6.3 115 52 Tu 1 . + CDS 114440 - 115204 630 ## COG1349 Transcriptional regulators of sugar metabolism + Term 115353 - 115390 -0.7 - Term 115198 - 115252 16.3 116 53 Op 1 . - CDS 115298 - 115810 595 ## COG0622 Predicted phosphoesterase 117 53 Op 2 2/0.105 - CDS 115823 - 117178 478 ## PROTEIN SUPPORTED gi|165937309|ref|ZP_02225873.1| non-canonical purine NTP pyrophosphatase RdgB 118 53 Op 3 . - CDS 117171 - 117998 779 ## COG0796 Glutamate racemase - Prom 118021 - 118080 4.2 + Prom 118095 - 118154 8.9 119 54 Op 1 16/0.000 + CDS 118263 - 118994 637 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 120 54 Op 2 31/0.000 + CDS 119029 - 119856 1149 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 121 54 Op 3 17/0.000 + CDS 119902 - 120615 761 ## COG0765 ABC-type amino acid transport system, permease component 122 54 Op 4 . + CDS 120627 - 121292 694 ## COG0765 ABC-type amino acid transport system, permease component + Term 121347 - 121400 7.5 123 55 Op 1 40/0.000 - CDS 121543 - 123966 3313 ## COG0072 Phenylalanyl-tRNA synthetase beta subunit 124 55 Op 2 1/0.263 - CDS 123974 - 125020 1402 ## COG0016 Phenylalanyl-tRNA synthetase alpha subunit - Prom 125040 - 125099 7.9 - Term 125047 - 125094 12.2 125 56 Op 1 . - CDS 125339 - 125683 414 ## COG1733 Predicted transcriptional regulators 126 56 Op 2 8/0.000 - CDS 125753 - 129547 3774 ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 127 56 Op 3 1/0.263 - CDS 129540 - 133130 3511 ## COG3857 ATP-dependent nuclease, subunit B - Prom 133156 - 133215 5.2 - Term 133165 - 133220 13.5 128 57 Tu 1 . - CDS 133241 - 133789 715 ## COG0681 Signal peptidase I - Prom 133878 - 133937 6.2 - Term 133947 - 134001 10.7 129 58 Op 1 13/0.000 - CDS 134009 - 134728 997 ## COG1556 Uncharacterized conserved protein 130 58 Op 2 17/0.000 - CDS 134721 - 136193 1361 ## COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain 131 58 Op 3 . - CDS 136206 - 136967 823 ## COG0247 Fe-S oxidoreductase - Prom 137127 - 137186 9.9 + Prom 137063 - 137122 10.1 132 59 Op 1 . + CDS 137319 - 137624 244 ## EF1105 hypothetical protein + Term 137628 - 137670 6.5 + Prom 137711 - 137770 9.5 133 59 Op 2 . + CDS 137805 - 137990 248 ## EF1104 hypothetical protein + Term 137991 - 138049 14.3 + Prom 137995 - 138054 12.0 134 60 Tu 1 . + CDS 138161 - 139513 1421 ## COG1113 Gamma-aminobutyrate permease and related permeases + Term 139530 - 139568 3.0 + Prom 139543 - 139602 6.3 135 61 Tu 1 . + CDS 139625 - 140026 509 ## EF1102 hypothetical protein + Term 140034 - 140076 -0.6 - Term 139921 - 139962 -0.8 136 62 Op 1 . - CDS 140023 - 140757 601 ## COG0500 SAM-dependent methyltransferases 137 62 Op 2 . - CDS 140827 - 142422 1518 ## COG1132 ABC-type multidrug transport system, ATPase and permease components - Prom 142453 - 142512 1.9 - Term 142494 - 142543 11.6 138 63 Tu 1 . - CDS 142547 - 144289 1659 ## EF1099 collagen adhesin protein - Prom 144453 - 144512 5.2 + Prom 144544 - 144603 8.3 139 64 Tu 1 . + CDS 144624 - 144929 300 ## EF1098 hypothetical protein + Term 144933 - 144981 10.1 140 65 Tu 1 . + CDS 145401 - 145619 56 ## gi|257415712|ref|ZP_05592706.1| predicted protein - Term 145500 - 145532 0.7 141 66 Tu 1 . - CDS 145739 - 146251 543 ## EF1097 hypothetical protein - Term 146521 - 146560 5.2 142 67 Tu 1 . - CDS 146611 - 146814 404 ## COG2155 Uncharacterized conserved protein - Prom 146839 - 146898 2.6 + Prom 146897 - 146956 8.5 143 68 Tu 1 . + CDS 147009 - 147302 190 ## EF1095 hypothetical protein + Term 147461 - 147499 1.5 144 69 Tu 1 . - CDS 147370 - 148224 936 ## COG3764 Sortase (surface protein transpeptidase) - Term 148242 - 148278 2.5 145 70 Op 1 . - CDS 148318 - 150201 2486 ## EF1093 cell wall surface anchor family protein 146 70 Op 2 . - CDS 150198 - 151628 1386 ## EF1092 cell wall surface anchor family protein 147 70 Op 3 . - CDS 151632 - 154943 2863 ## COG4932 Predicted outer membrane protein - Prom 155097 - 155156 9.8 + Prom 155084 - 155143 5.3 148 71 Tu 1 . + CDS 155271 - 156692 1260 ## EF1090 hypothetical protein + Term 156802 - 156856 17.3 - Term 156789 - 156842 17.1 149 72 Op 1 . - CDS 156878 - 157273 305 ## EF1089 hypothetical protein 150 72 Op 2 . - CDS 157344 - 158057 567 ## COG2761 Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis - Prom 158100 - 158159 7.0 151 73 Tu 1 . + CDS 157992 - 158135 62 ## - Term 158142 - 158188 6.0 152 74 Tu 1 . - CDS 158197 - 158643 438 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 158823 - 158882 6.9 153 75 Op 1 . - CDS 159013 - 159255 242 ## EF1085 hypothetical protein 154 75 Op 2 . - CDS 159326 - 159757 504 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins 155 75 Op 3 . - CDS 159810 - 160115 365 ## EF1083 hypothetical protein 156 75 Op 4 . - CDS 160133 - 160315 244 ## EF1082 hypothetical protein - Prom 160335 - 160394 2.3 - Term 160344 - 160396 4.4 157 76 Op 1 . - CDS 160402 - 160791 507 ## EF1081 hypothetical protein 158 76 Op 2 . - CDS 160796 - 162112 1229 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair - Prom 162133 - 162192 7.9 - Term 162207 - 162253 9.1 159 77 Op 1 6/0.000 - CDS 162263 - 163417 1311 ## COG0477 Permeases of the major facilitator superfamily - Prom 163545 - 163604 9.9 - Term 163429 - 163457 -0.9 160 77 Op 2 . - CDS 163610 - 164050 573 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 161 77 Op 3 . - CDS 164074 - 164832 625 ## EF1076 streptomycin 3''-adenylyltransferase, putative 162 77 Op 4 . - CDS 164863 - 165369 575 ## EF1075 acetyltransferase - Term 165397 - 165430 1.4 163 78 Op 1 . - CDS 165442 - 165705 341 ## EF1074 hypothetical protein 164 78 Op 2 . - CDS 165769 - 166263 417 ## EF1073 hypothetical protein - Term 166296 - 166344 8.2 165 79 Op 1 1/0.263 - CDS 166345 - 167349 901 ## COG1609 Transcriptional regulators 166 79 Op 2 . - CDS 167356 - 168849 1586 ## COG4468 Galactose-1-phosphate uridyltransferase Predicted protein(s) >gi|307679015|gb|GL456782.1| GENE 1 59 - 1108 1275 349 aa, chain - ## HITS:1 COG:ECs4289 KEGG:ns NR:ns ## COG: ECs4289 COG0673 # Protein_GI_number: 15833543 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Escherichia coli O157:H7 # 1 348 1 345 345 352 51.0 9e-97 MTVKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFTTDLNEL LTDPEIELVTICTPAHTHYDLAKQAILAGKSVIVEKPFCDTLEHAEELFALGQEKGVVVM PYQNRRFDGDYLAMKQVVEQGFLGEINEVETHIDYYRPGSITEQGPKENGSFYGLGIHLM DRMIALFGRPDQVTYDIRNNEVSEAVDNYFDVDLHYGSKLKVKVKTNHSVASPYPRFIVH GSNGSFIKYGEDQQENDLKAGIMPDAPGFGEDSPMYYGEVTYRNGNGDWIKKQIKTPVGD YGRYYDAVYETLKNGAPQLVTKEQALTNIEILEAGFLNPSPSIYRLKEN >gi|307679015|gb|GL456782.1| GENE 2 1133 - 2566 2033 477 aa, chain - ## HITS:1 COG:L179659 KEGG:ns NR:ns ## COG: L179659 COG2723 # Protein_GI_number: 15672157 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Lactococcus lactis # 1 475 1 475 478 741 74.0 0 MEHHQLKAFPQDFLWGSASAAYQVEGAWNEDGKGASVWDEFVRLPGKTFKETTGDLAVDH YHRFKEDVALMKQQGLKAYRFSIAWTRILPEGRGQVNQAGLKFYSDLIDELLAAGIEPMV TLYHWDLPAVLQKEYGGWESRKIIADFVAYAKILFDAFRGKVRYWISLNEQNVFTSLGYQ LAVHPPGVTDNKRMYEANHIANLANAAVINAFHELEMPGKIGPSFAYTPVYAVDAHPANV LAAENAEDLLSHFWLDVYLWGEYPIAALNYLKEQGVAPTIKEGDLALLRSAKPDFLGINY YRTDTVAANPLDGVGIGKMNTTGEKGSETESGVPGLFKKVNNPYVERTNWDWAIDPQGLR IALRRLASRYQVPILITENGLGEYDTLTEDKQIHDTYRIDYLRSHIQAIQEAITDGVSVI GYCTWSYTDLLSWLNGYQKRYGFVYVDQDETQKGSLERIPKDSYYWYQKVIETNGLI >gi|307679015|gb|GL456782.1| GENE 3 2809 - 3522 839 237 aa, chain + ## HITS:1 COG:lin0390 KEGG:ns NR:ns ## COG: lin0390 COG2188 # Protein_GI_number: 16799467 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 234 1 235 237 167 39.0 2e-41 MRTNTRYKEIYAAIKQDIEAGVYPINQKLPQGRLLAEKYQVSELTITKALHLLVQEGYVV RRRGSGSFVQDFQNRTITKFSPLTGTYSTYDGKVESVVLGFATEVPEPWVTEKLSITEEE LVYKIIRLRIIEDVPSIIEYTWMPVALIPNLTMKELKVSIYQYISEQLHQKIQSARVSIS GIRPSALEKKYLNLTDNDFLMRAEQIAYLGNGHIFEYSIANHIPSEFTFETVLIAEK >gi|307679015|gb|GL456782.1| GENE 4 3793 - 4323 598 176 aa, chain + ## HITS:1 COG:no KEGG:EF1241 NR:ns ## KEGG: EF1241 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 12 176 12 176 176 317 100.0 1e-85 MSLLVLSTLLSACSTVSGSPASQSAPAPDEVLATSIGTYENRTLLVPDGRLALTALHKGK DYQGKPMFYVLFELTNTTEKTQNIQLMIQSFMEVSQTVHGKAQNLQYAVLTDSPFQDKLD RLADEINPGETIQGAYPYEFINENKPVHFKFRDRLLSLDEPIASEEITITEKSLVR >gi|307679015|gb|GL456782.1| GENE 5 4356 - 5321 956 321 aa, chain - ## HITS:1 COG:lin1838 KEGG:ns NR:ns ## COG: lin1838 COG1609 # Protein_GI_number: 16800905 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 317 1 317 321 363 59.0 1e-100 MVGIKDIAKKAGVSISTVSYALNGSSKVTEETRTRIQAIAEELNYVPNMAARTLKRRQTN IIGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSGKKSHLFIPEKMVDGAIILDWTFP TKEIEKFAERGHSIVVLDRTTEHRNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEK GYDSQERLAVSTRELTRFGIPYEIIQGDFTEPSGYAAAKKILSQPQTEPVDVFAFNDEMA IGVYKYVAETNYQMGKDIRIIGFDNSELGAFVQPRLATIAYSKHRWGMVAAEKIIHLMRG ELAESEHIYTRFIEGESFPSE >gi|307679015|gb|GL456782.1| GENE 6 5337 - 8612 3079 1091 aa, chain - ## HITS:1 COG:lin1839 KEGG:ns NR:ns ## COG: lin1839 COG3459 # Protein_GI_number: 16800906 # Func_class: G Carbohydrate transport and metabolism # Function: Cellobiose phosphorylase # Organism: Listeria innocua # 3 1086 4 1078 1086 866 43.0 0 MQIKKLKQADTVATFLETGDLKELNSYGMMINQLEGNPLDGSMNQLYLRIITGDTINYRP MIGSNSQSDFYLSDNQLTWRGEFEAVRYQVDFRLGPSNQWFWRVNVTGTGLVDIVYGQDI GLATKGAVQSNEAYVSQYLDHHIWQEGEELVVLSRQNQPQNEKFPALIQGSFQKLVGYST DGYQFFGRSFKQTNTPEALGKRYLANEVYQYEFAYTALQTEAFQLTNESKEFVFYGAVTE THPQALAEPFLSKEAFQAIYETVTFDSLEETQDSPTKLLGEPITGNPLTEEELAALYPLQ TQIEKVAGQTYSFFTENYHHVVLQEKEIAMERAHGHILLSGKGLTVDEPLLSTTVYMYGI FNSQVVLGNTTMNKLMSNSRNALNVMKRSGQRIYILENGLWRLLTMPSAFEMGLNSATWY YKLPKDTIRVRTFTSPDSRVIQLEVTSQKDAYMWAVSNHLLLGPEEVPTYQLEQTGKTLR VTGNHSATENYYPELTYTLTVDKSFQVTDSTLFGGAEADLLVLAIEKTQKFSLLITGSIE DQALVNTPLDFEKAESQYLAFINGLLHHFELTHTDSSVQQMNQLTRWYTHNMLVHYLSPH GLEQYGGAAWGTRDVSQGPTEFFFATQQPKIVASIIQHLFENQFEDDGNWPQWFMFDRYE EQKASESHGDIIVWPLKVVTDYLEQTADYSILATEIPYTSRKDNHKTKETASLFEHLKKE INYIEQHFLPETFLSCYGDGDWDDTLQPYDNRLKEQMASSWTVALTYQVLKKFAALITEI DATYSQHLAILVAGIKNDFQKYMLADETIPGFIYMETPETFEQMIHPNDQKTGIQYRLLP MTRSMLAELLTPEQVSHHLEIIEKELTFPDGVRLMNKPANYRGGVSTNFKRAEQAANFGR EIGLQYVHAHIRYTEAMAKIGQRDKTWQALMQINPVQLKEVVHNAELRQANAYFSSSDGD FKTRYESQENFGKLKDGSIGVKGGWRIYSSGPGIYLNQLITAVLGIRQKAQSVVFDPMLP EKLSGLTLTYQLFDKPVTYKFYPNQSAKIVIDGQEVPFKFEENPYREGGMEVQKDEVLSL LNEASVIEIYH >gi|307679015|gb|GL456782.1| GENE 7 8630 - 10780 2519 716 aa, chain - ## HITS:1 COG:lin1840 KEGG:ns NR:ns ## COG: lin1840 COG1472 # Protein_GI_number: 16800907 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase-related glycosidases # Organism: Listeria innocua # 1 712 1 717 723 633 47.0 0 MKENQLIQLVEEMTIDEKINQLLQLAAAFYSDKAEEKTGPMSELGLSQETIDTAGTTLGV SGANEAKRVQKEYMQNHRLNIPTLLMADIIHGFRTIFPIPLALGSTWDEAAVEKMAEISA KEAAVSGLHVTFSPMVDLVRDPRWGRVMESTGEDPLLNSRLAAAMVRGYQGENLKEDNWR VAACVKHFAAYGGALAGRDYNTVDMSERQLREMYLPGYKAGLDAGAKLVMTSFNTVDGIP ATGNQWLFRDVLRNEFGFEGVVISDWGAIKELIPHGVAKDEKQAAELAIKAGVDIEMMTT CYPDYLKELLEEGRIAETLIDEAVMRILKLKNELGLFENPYRGADEQAEAEVILSKEHRE IAKKIAQKSMVLLKNENILPFTPQEKIALVGPGAQSQDILGAWSWQGKKEEAISLVAGAQ KLTTNLLVAQEPFDYFEPTAAAIEEALTLASQADKVVVALGETDWMSGEAASRSDIRLPE KQLAVVAQIIEKNPNVVVTVYSGRPLDLQGIDVAKGIVQAWQPGTEGGNALAEILWGEYN PSGRLSMSFPETVGQVPIFYNVDNTGRPYESAPEEKYVSKYLDVSNYAKYPFGFGLSYSH FSYQPIQLSALTFTKEQPVTVSVLVRNDSPIAGEETVQFYVRDLVGQVVRPIKELKDFQK VWLEPKEEKEVQFLLSEDMVRYVHSDNQVTSDAGEFIVMIGGNSRDVQTATVTLNE >gi|307679015|gb|GL456782.1| GENE 8 10785 - 11549 759 254 aa, chain - ## HITS:1 COG:lin0348 KEGG:ns NR:ns ## COG: lin0348 COG3568 # Protein_GI_number: 16799425 # Func_class: R General function prediction only # Function: Metal-dependent hydrolase # Organism: Listeria innocua # 3 247 4 252 257 168 35.0 8e-42 MKIATYNVRVDTEYDQDWQWSFRKEAVCQLINFHDWSLCCIQEVRPNQVRDLKAYTTFTC LSAEREGDGQGEGLAILYNEQKIQAIDTGYFWLSETPQQPSIHPEAGCPRIALWGLFKET TQNTPFLVINVHLDHISAHARLAGMTVILEELHDKIAQYPTLLMGDFNAESGEEVHQLVQ KKFQDSKNLATHYGPRGTFQNFTYTKPWAELEEIDYIYVKGWQVQQTASLTDSIDGRFPS DHFPLEAEVCIEER >gi|307679015|gb|GL456782.1| GENE 9 11530 - 12447 742 305 aa, chain - ## HITS:1 COG:TM0077 KEGG:ns NR:ns ## COG: TM0077 COG3458 # Protein_GI_number: 15642852 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acetyl esterase (deacetylase) # Organism: Thermotoga maritima # 3 297 23 324 325 164 34.0 2e-40 MNEYFEFWEKTKEELQKIPLDIHRRVIDYPLENVQVEQVDFLSFLGERIFGYLLLPKTAG KQPIVIDCLGYMNHIQEPWQFAHWTQIGCACFVIDNRGQGGLTKDRVPYQTIWHEAPMGR GFLDKEDWYQRRLFADHLRSVEVVRTFTEINQDQIILRGGSQGGGVVLMVNSLVDFPILA TFADVPSHSCLENRVAEGTGSYQIIHQYLQEHPQAHEKIAAVLPYFDSRHFVSQIKNPVF ASVGSHDPICPMKDFFPSYHQIKARKAVRVYWKKGHGGGETTQIRREMRQIQQLLQEVKN ENSYV >gi|307679015|gb|GL456782.1| GENE 10 12440 - 13033 497 197 aa, chain - ## HITS:1 COG:no KEGG:EF1235 NR:ns ## KEGG: EF1235 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 197 1 197 197 252 99.0 5e-66 MNKLFAYEGWYYRIFSFIANLIIINFLFLITCITGIFSGVGLIALYRTIYRLYREKDIPV LRTFWTALKNNIMRGFILTGVLFVAFLLGGIVVTSLFKIATSLGFLAIFLLSFVALFLTS FLFLFSVFNWSVKKTLGETVYVVLSNSANAIILFILPLLTFVFFYKLNLFLYIALGFGTT AFLQVAFFQKVLGVEHE >gi|307679015|gb|GL456782.1| GENE 11 13090 - 14688 2243 532 aa, chain - ## HITS:1 COG:BH1913 KEGG:ns NR:ns ## COG: BH1913 COG1653 # Protein_GI_number: 15614476 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus halodurans # 90 420 76 411 551 96 25.0 1e-19 MKKVLGGLLVATAVVSLAACSGGEKKASSDVSIKDRYELDEKTPAWKLDKKKEPTKIKWY INSDWTALPFGKDVTTAQIKKDLNVDIEFISGDDSKLNAMISSGDMPDIVTLTEKTGQAA LKADSWAYSLNDLAKKYDPYLMKVVNQDTFKWYALEDGKTYGYPNYSNTKADYESGNIPV NDNFVIREDVYNALGKPDVSTPENFEKVMQQIKEKYPEMTPMGFTTVGDGAGPFLDKLQD FLGVPLEDKNGKYYDRNLDKEYLEWLKTFNDVYRAGNISDDSFTDDGATFDEKVKQGNYA TMLVAGTSGQGGNFTEFMKKSGTRYIAIDGPSSTSGRKPTLNQTGISGWLSNYITKDAKD PAKVTQLFTYLIDEPGQILTKYGVEGVTYAYNDQGKIDYLPEVKKLEQTDNDAYNKKYGI SRFLYFNNDRVNKLKVPMESALTQMQEWGKGKLVPHFVIENINPDAGTPEARANEAIETK LNTTVISMIRAKDDKAFDKSLEDYKAFLKSNKWDAIEKIKSEKMAENRDKLK >gi|307679015|gb|GL456782.1| GENE 12 14706 - 15587 746 293 aa, chain - ## HITS:1 COG:BS_lplC KEGG:ns NR:ns ## COG: BS_lplC COG0395 # Protein_GI_number: 16077779 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Bacillus subtilis # 6 292 10 294 295 220 41.0 3e-57 MIKRKSKENKWFYFFNTLILVLFSLLIIVPIWNILVSSVSSSSGLAGKGLVLWPKGFTLE NYRKVFSDSSIPRAFLISVLKTVIGASTHTLFCAIVAYGLSKSRLVGRNIYTTMGVITMY FGGGMIPTYLLIKSLGLLDTFWVYIIPALFSYYDVVILMNFFREIPPSLEESAKIDGASE FQIFYKIFLPLTKPALATIILFNGVGQWNDFMTTKLYITKEYLYPLQMKIYEIIVQSNLS TMTESGSTDMVVQATTRGVQLATIVITTIPILIIYPLLQKHFIGGMMAGAVKE >gi|307679015|gb|GL456782.1| GENE 13 15602 - 16513 1020 303 aa, chain - ## HITS:1 COG:BH2112 KEGG:ns NR:ns ## COG: BH2112 COG4209 # Protein_GI_number: 15614675 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type polysaccharide transport system, permease component # Organism: Bacillus halodurans # 4 299 39 335 337 225 41.0 6e-59 MKKLKKFYDQRQLHWMVLPGVAFMIVFNYIPIYGIIIAFKNYTIVDTVSSAPWVGLENFR IIMEDSFFWEAVRNTLAISLMKLFLGFAIPIILAVMIFEMRDGHLKKVIQTISYIPHFFS WIVLGGMLISWLSTNGFINQVMMSLGLMNQGVNHLLDPDKYWWIAVLSDLWKEVGWGTIL YLAGMSRIDPTFYEAARIDGASKLTQIRTITLPLLAPIISLNLILNVSGLLGSNLDQTLV LMNAQNQNKSEVINSFVYRMGLTQGDFSYATAVGLGISVISIVLLVITDRITRKMNNGRS VIL >gi|307679015|gb|GL456782.1| GENE 14 16805 - 17629 905 274 aa, chain - ## HITS:1 COG:L42411 KEGG:ns NR:ns ## COG: L42411 COG1408 # Protein_GI_number: 15673582 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Lactococcus lactis # 2 271 3 277 278 240 44.0 2e-63 MVKKIGLSIMLLFFFLIIALPIYAWKIEPNLVHVNQVTLGKKNQREPLNVVQLSDIQVSE FYETKRLDKVIKKVNREKPDIIVFTGDLFDNYAKNPQQKEPMIEKLKQLQATIGKYAVWG NHDYGGGASAVYDEVMEASGFTVMKNQGETVTLADGRRLFIGGLDDSLLGNPSVSETLSY RETYDYALLMTHEPDVADAFVGTGTQLVLAGHSHGGQIWIPFYPITNVLAEKYTRGLYQL DQETQLYVNTGLGTTAIHARFGVIPEITHFTIYI >gi|307679015|gb|GL456782.1| GENE 15 17837 - 17932 138 31 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLAGLFSVTGMILLGILFCLIGYQTFRKHHH >gi|307679015|gb|GL456782.1| GENE 16 17953 - 18636 496 227 aa, chain - ## HITS:1 COG:no KEGG:EF1229 NR:ns ## KEGG: EF1229 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 226 1 226 227 408 99.0 1e-112 MSTMRETQSRCGENKNTKDSQLRQAVNYKDLTGQKFGELTVVAPTAKRKEGLIVWACRCS CGSYAEASRRQLIRGYRTKCAHHRYQTMLKKNYHELVVVRIESIQQTMKAYCLCSCGQSC WVRCENLLNGHTKSCGHRKKKDYRQRVAGVIPGKLQSKRPKNNSSGHKGVSQTASGKWLA YISLKGKRHNLGIFTKKSEAILARKLAERRLFQPILQQEIVTTNKEV >gi|307679015|gb|GL456782.1| GENE 17 18578 - 20068 1063 496 aa, chain - ## HITS:1 COG:no KEGG:EF1228 NR:ns ## KEGG: EF1228 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 496 1 496 496 942 99.0 0 MTTLLDELLDQEFRDKLLIYQTFMNSEGPLLKEEFYGYFDLSTQKLESLCRQINYECTQI SSRSQILFPAKGLISAQKLSQIDYQALRKYYFDQSLMAKLLLDVGLYQKHTIQEFSQIHF MSKSKIYAFSYKLNLILANWHIKLKSTGLVGEEKNIRSFCFQCLYYFYGSNQERLPNILM ENSPGIKRFINDLQLMYQRTFSLNQSAQLFILLTIQRFRVFSDHVVDSFTEVHVPSCLQH AFEKIYTSETPLFKEDFGKETSYIFLFLSLNEYIDSPIVFPDKLTMLDEFIDHMNSVIPF FEKRITVETKEKLKLICYRWDRLYFSVAAFIPAKQSSFFEERFPQIHRALDGFIQKTESL HQKRFLMYERVHLYYDFMFCLLNDRSFCAIEKTIHVFVDFSGGEDYNRFIAKIIASFNYM DVMIDHKLTLETDLYLSDFYSSKVRCRQLTWRHLPETKDWQVFAEVVRELRKGETQKNEH YERDPIEMWREQEYEG >gi|307679015|gb|GL456782.1| GENE 18 20480 - 21736 1391 418 aa, chain - ## HITS:1 COG:SP1472_1 KEGG:ns NR:ns ## COG: SP1472_1 COG0431 # Protein_GI_number: 15901322 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Streptococcus pneumoniae TIGR4 # 1 187 1 187 187 257 65.0 2e-68 MKLIGIVGSNADSSYNRLLLQYIGKEFYKMFDLEILEIKDIPMFNQSKDQTNSVLIQNMN RKILQADGVIIATPEHNHTIPAGLKSVLEWLSFKIHPLENKPVMIVGCSYYDQGTSRAQL HLRQILDAPGVNAIVMPGNEFLLGKAKEAFDENGNLIAEGTRQFLESTLQKFVEFIDVIS KLEGAKPKDLPEDLHAKGTIETTIEGVDMAADDWVEQAAEAVQAVEGDTYVKLDRGILTV DQLNYFLKSMPMELTYADSNNQFLYYNKKMVAEEMFAKRQPGQVGNPLANCHPPKALKNV EWVIQQLRSGKTDAIRVHVPMHGPDTYVVHNYQAMYDDNGNYAGINEYILDFKPIVDWYL KQTGQELVGGKNVDAVSGASKKEAPETADSVSSASVHEEESATEKPTVDSVSSASIKE >gi|307679015|gb|GL456782.1| GENE 19 21755 - 22363 750 202 aa, chain - ## HITS:1 COG:SP1471 KEGG:ns NR:ns ## COG: SP1471 COG0431 # Protein_GI_number: 15901321 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Streptococcus pneumoniae TIGR4 # 1 202 1 201 201 247 60.0 1e-65 MKKIIGLVGTNSEQSTNRQLLQFMQHYFAQEADIELVEIVDFPMFNKPEDKVLPEIVKTV AEKIEAADGVIISTPEYDHAVPASLMNALSWLSYGIFPFVDKPVMITGASYGTLGSSRAQ AHLRQILDAPELKARIMPSSEFLLAHSLQAFDENNALKDSEQIDKLAGLFADFCVFIEIT EQLKHAHAQNKKEAENFSWETI >gi|307679015|gb|GL456782.1| GENE 20 22390 - 23325 835 311 aa, chain - ## HITS:1 COG:SPy1138 KEGG:ns NR:ns ## COG: SPy1138 COG1477 # Protein_GI_number: 15675115 # Func_class: H Coenzyme transport and metabolism # Function: Membrane-associated lipoprotein involved in thiamine biosynthesis # Organism: Streptococcus pyogenes M1 GAS # 1 302 1 303 312 301 51.0 8e-82 MQQSQTIYLMGTVIDVFVDHEEPEKILEEVHQRLITYEQRFSANDSTSELMAVNQQAGQK PVSVHPELYQLIALGKKHSCDPASHLNVTIGPLVQTWRIGFKDARVPSEKEIKACLKKIN PEKIHLNPLKQTVFLEEEGMKLDLGALAKGYIADLLIAYLKEVHVTSALINLGGNIVTLG PSTHQNKKWRIGIRNPQESRETISLLVEVANQSVVTSGIYERSLTEAGRVYHHLLDPTTG YPLETEMASITIISDASVDGEIWTTRLFGYPIPEALEILNQLDGIEGVIITQDQQILYSS GLADTLHIIHS >gi|307679015|gb|GL456782.1| GENE 21 23545 - 24414 842 289 aa, chain - ## HITS:1 COG:no KEGG:EF1224 NR:ns ## KEGG: EF1224 # Name: not_defined # Def: Cro/CI family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 289 6 294 294 532 99.0 1e-150 MNIQRFIEKRKARGLSQSELAKGICTQVTVSRFEKNGQVPTLKILIQLCNRLELPLGELF PRVGIKQPEILEKMEEAEFFLITSEHDQLQTILKNIPFDEIKDSQLLLEYYYLQGFVMIF QNASLMDCLFTFEKLLFEEQKYTSDIYRLLAFTGIGMAYAKEGEIEKAEFYFNKVFKEIY LYTIQSMEDTWRVLNVVFHCGVFYAEKGDLETSDALLEYAISICSDNHVTYYLARAAFQL AKNALAEEKPQEQILELLQDARAYAKINKNRILLEAIQTLKETILSKEN >gi|307679015|gb|GL456782.1| GENE 22 24620 - 25948 1192 442 aa, chain - ## HITS:1 COG:MA1276 KEGG:ns NR:ns ## COG: MA1276 COG0402 # Protein_GI_number: 20090140 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Methanosarcina acetivorans str.C2A # 4 410 15 414 442 256 36.0 9e-68 MKTLIKNVHILTMDEQFSEIKAGYLVIEEDTIVELAPMTTLDEKRMAANQVIDGQNGILM PGMINTHTHVGMIPFRSLGDDVPDRLRRFLFPLEQFMTKELVGCSSDYAIAEMLLSGITS FCDMYYFEDEIAKSCEKMSIRALLGETIIDMPTCDSPEPSGGLFYAETFIRKWQGHPLIT PILAPHAPNTNSPEVLAKIIELSRRYQVPVTMHVAEMTYEMAEFEKAYQKTPIAFLEELG YLSEPFILAHCILATDEDLASLAATNGKARVAHCIGANTKSAKGVAPIKQMLDQGIIVGL GTDGPSSGNTLDLFTQMRMVANFHKTAHQDRSLFPAKEIVYLATMGGAKTLGLAEQVGSL EVGKKADITLIETQSVNMFPIFDAYSALVYSANASNVEAVWVNGQQLVANKELQQANLKE IKGKLYQAMNTFVKEAKKRAAL >gi|307679015|gb|GL456782.1| GENE 23 25932 - 27671 1704 579 aa, chain - ## HITS:1 COG:BH0640 KEGG:ns NR:ns ## COG: BH0640 COG1001 # Protein_GI_number: 15613203 # Func_class: F Nucleotide transport and metabolism # Function: Adenine deaminase # Organism: Bacillus halodurans # 4 562 19 574 585 265 31.0 1e-70 MNVDVLLKNVWLYQTVTQTFVQRNVAIKNDKFYYIYEEENVNLQPQKTINAENQWMIPGL IDAHMHIESSMTTPTIFSKAVVRYGVTTVIADAHEMANVFGLEGLKAFMAAETELDIFHA IPSSVPSTTPELETTGGIIGLAEVAELLKEPKVICLGEAMNFKGISYEPDSLIRQIIDLC QKQRPTMPLEGHCPKIEDQELADFLYSGITSDHTHQFPKTLKEKIEAGVFIQFQNKSITP ENIQVIVDNDFYNYASIITDDVMADDLLKGHLNENVKKAVHAGLPIEKAIYMATYTPAKR MGLHDRGEIAPGKKADFLLLNDLESFDITTVYKSGKVVFEKGEPFHYPEKIEEFPAAYQQ TIQCKKLTEEDLLLKVATTKETVRCNVIQKQEIGTFTERITKEIPVENGLLQWQKANCAL LIVMERYGKNGNISFSLMDQPLSEKGAIGTTWAHDHHNLMVMGNTIEDILLAQNELLAMQ GGYLVASDQQVMATCPLPIGGILSQAPIDQLGASLQKVRQAMQALGYQNMNEIMSFSTLS LPVSPAIKVTDFGMMDTKSQRFYPLVFPEDGVLLHENTH >gi|307679015|gb|GL456782.1| GENE 24 27692 - 28756 1478 354 aa, chain - ## HITS:1 COG:AGl890 KEGG:ns NR:ns ## COG: AGl890 COG0687 # Protein_GI_number: 15890562 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 10 354 6 340 340 143 29.0 7e-34 MKKRVILGTLVAATLLMTACGNSEATTKSESKGGSNALVVSTFGLSEDIVKKDIIAPFEK ENEAKVTLEVGNSADRFTKLKNNPNAGIDVIELAQANAAQGGKEGLFEKITEKEVPNLSQ LTPGAKEVFESGAGVPIAVNSIGIVYNKEKLGKEIKNWDDLWSADLKGKISVPDVATTAG PLMLYVASEHAGQDITKDNGKAAFEAMKELKPNVVKTYSKSSDLANMFQSGEIEAAVVAD FAVDIIQGAAENVTYVVPESGTYANYNTVNIPKKAQNKETAFKFVNARISEESQKAKAIS LNEGPTNQQVTLSEKEAKNKTYGAIAERAKTVDFNFINSQLADWIDQWNRTMNQ >gi|307679015|gb|GL456782.1| GENE 25 28783 - 29823 1267 346 aa, chain - ## HITS:1 COG:SMb21276 KEGG:ns NR:ns ## COG: SMb21276 COG3842 # Protein_GI_number: 16264528 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Sinorhizobium meliloti # 3 346 6 340 342 300 46.0 2e-81 MTFVDLKDIRVSYDGKQDILKDLNISMEKGELVSLLGPSGCGKTTTLRVIAGLIKPNDGQ FFVDQEELTKVPVHKRNFGMVFQSYALFPHLTIAENVAFGLKLRKESKQTMDQKVTEMLK VCGLESLGDRYPKQLSGGQRQRVALARALIIEPKLLLLDEPLSNLDAKLRVAMRIEIKRI QQQLGITTVFVTHDQEECFSISDKVAIMNNGVIEQYDSPETIYRLPRTKFVAEFIGFENF FSVEKMEAGHYRTQTNQIVKTTNPEPNVTTTMATIRPEDIEIVSEAATNTVAGTVAVRTF LGKSYQYEVETALGTLLVNGTSEQLYETNETIHLAFPAEKLVILEK >gi|307679015|gb|GL456782.1| GENE 26 29862 - 30641 937 259 aa, chain - ## HITS:1 COG:SMb21275 KEGG:ns NR:ns ## COG: SMb21275 COG1177 # Protein_GI_number: 16264527 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Sinorhizobium meliloti # 10 256 10 256 259 189 44.0 6e-48 MRKQKGLSVIAILVFLFLFLPLCLIVVTSFGTAAAIQFPIKGFTLDWYAKALQSETFMDS FKLSLLIGVLATVLALIVGIPASYALARYSVRGRNFIKSFFLSPTVIPGIVVGYTLFQYI VIKLGLPVFQGLLMGHFLISLPYIIRVVGSSMEQLDYSMEEVAWTLGCTRLRAFIQIVLP NVSSGIFAAFMLAFVNSFNNVPVSMFLSGPGVTMLPTSLLSYMEYNYDPTVSAISVLLML LTMGLMFLIEKTLGLASIA >gi|307679015|gb|GL456782.1| GENE 27 30634 - 31470 869 278 aa, chain - ## HITS:1 COG:AGl889 KEGG:ns NR:ns ## COG: AGl889 COG1176 # Protein_GI_number: 15890561 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 21 257 74 310 326 175 39.0 9e-44 MNKKVPYLIVAPGLVLLLFFLMIPLITSILPTIFTDHGLTLNQYVTFFKDDYNVSIFWRT IRVSLIVTGISIVLGIPTAYFIAGVSKKWRGFLMAMTLFPLLTNSVIRSFAWINILGKNG VVNTLLLKTGLIEQPLNLLYTEFAIIIGSVYLFLPTMIMTLVGVMENIEGEMLEAAETLG ANPMTAFRKIVLPLSIPGTIVGSILVFTGTLTAYTTPQLLGGNQKMMMSTFLYQKANTLG DWQSASVLAFIMILTTLIVMKGLDMVAKKVDRREANHA >gi|307679015|gb|GL456782.1| GENE 28 31679 - 32083 385 134 aa, chain - ## HITS:1 COG:no KEGG:EF1217 NR:ns ## KEGG: EF1217 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 134 1 134 134 233 97.0 2e-60 MSKCLGLLMILFVLSGCSGSRNSQQEVVIEKSANNDKARQFVDQKNPHLGTQLEAESYTK QEAIEFLQNGLGIPTNDSAFHYTFKQSNKGSYVVQIISEKNSVSKENELFGYYQVYQDGI IVKMMEKDQTFQEN >gi|307679015|gb|GL456782.1| GENE 29 32332 - 33051 801 239 aa, chain + ## HITS:1 COG:no KEGG:EF1216 NR:ns ## KEGG: EF1216 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 238 1 238 239 466 98.0 1e-130 MKQKNLLTYQSLAALLLVFSLFSFDPSVSFATRSGKTPVSVELELGGLPGDESVDDAIDP DLENPNTSFDLLFIPKEFTFETQAISGDLTAVPIRPSEGNTHTMRHFGMGDVRGALTGWH VTAEIPHMRNEAHSLLGIITFQLTGGYARYDKTLRRFFMTNTMYGLDFSEDPAAPDFPTN PIIIGNGATLMSNAGDRKGQGMWSGRMTDISLAIQTPVSQLFPGAYTGSIIWNLISGPA >gi|307679015|gb|GL456782.1| GENE 30 33165 - 34247 1062 360 aa, chain - ## HITS:1 COG:no KEGG:EF1215 NR:ns ## KEGG: EF1215 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 360 1 360 360 661 100.0 0 MDTLYRSWQLSGWLYHDIFVIIVAIIFIVISGILVISLIRRRSTRRLVPYALILLVYLAV VHFAGLIFFGMFRSVTIEEKSATFYSEKTKGLTSIERMIIPNGRTNGISTSNSLFQVISV NSQTGERMWSKRLGWRDYLIGQTDQYVVLNNADNEAIYLLDTKTGKKQFSEADLVKKFPE LKDYLSSDFVDYRFMDNRYLYIYGLNNRYYQLDLKNWQLKQDPTFKEVFQTQEAPKWTVD SNESQIGQELSSEERTTVQGKLEEQLIAPVLLGKKDEANYYVLSYKKRQSNQAIVGLYNW QKKTYEWQTPLLLTKENVPIEAFQVEDALFIKVPRYLYKINLNNGNQEYQFDYRWGQVIR >gi|307679015|gb|GL456782.1| GENE 31 34388 - 35092 822 234 aa, chain - ## HITS:1 COG:SA2007 KEGG:ns NR:ns ## COG: SA2007 COG3527 # Protein_GI_number: 15927786 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Alpha-acetolactate decarboxylase # Organism: Staphylococcus aureus N315 # 6 234 5 234 234 233 51.0 2e-61 MSEQYVYQHGTLGGLMESLMAGTAEIGTLLTQGDFGIGTLEGSNGEIILLDGTLYHANQT GEITILEGEELTPYAAVTRFQEDGAFPVSTETDENIKAQILEKISPNFFAAIKISGLFAK MHVRVAPKQEKPYPPFVEAARNQPEFTAENIQGTVVGFFTPKLFHGASAAGFHLHFISED HQFGGHILDFGIKQGTVSWMETAELRQHFPVHDADYRNKEIDIAKALSAIEEAE >gi|307679015|gb|GL456782.1| GENE 32 35104 - 36756 2019 550 aa, chain - ## HITS:1 COG:SA2008 KEGG:ns NR:ns ## COG: SA2008 COG0028 # Protein_GI_number: 15927787 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Staphylococcus aureus N315 # 5 547 8 551 554 695 64.0 0 MSKKGSDIIVESLINHEVPYIFGIPGAKIDGVFDALVDKGPELILARHEQNAAFMAQGIG RLTGEPGLVIATSGPGASNLATGLVTATAEGDPVLALAGQVKRSDLSKLTHQSMNNAALF SPITKFSTEIQDPETLSENIANAYRIAKTAKKGATFLSIPQDVTDSPVTGEAIKPLSAPK LGHASAETIAALAERIKQAKLPVLLLGMRASARKVTAAIRELVAITGLPVVETFQGAGII SKELEEHFFGRVGLFRNQPGDRLLKRSDLVIAIGYDPIEYEARNWNAEKDARVIVIDEVQ MEIDQYMQPEEELIGDMSKNILKLSEAFSEPILTEDAQDYLETLQEKLTIKEVKTSTIEN RLHPLEIVQTLQEKTTNEMTVTVDVGSHYIWMARHFRSYEPRHLLFSNGMQTLGVALPWA ISAALVRPNTQIISVSGDGGFLFSAQELETAVRLKQNIVHIIWNDGSYDMVKFQEEMKYN RSSGVDFGPVDFVKYAEAFGAKGVRVHSQAEFAAALEEGMQTEGPVIIDVPVDYSDNQEL GKTLLPDQLY >gi|307679015|gb|GL456782.1| GENE 33 37034 - 37945 1268 303 aa, chain + ## HITS:1 COG:BS_lytR KEGG:ns NR:ns ## COG: BS_lytR COG1316 # Protein_GI_number: 16080618 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 22 300 24 304 306 248 43.0 7e-66 MSKGKKIFAIIFGIILVLFLAVVGMGAKLYWDVSKSMDKTYETVERSKKSQVNLNNKEPF SVLLLGIDTGDDGRVEQGRSDTTIVATVNPRDKQTTLVSLARDTYVDIPGQGKQDKLNHA YAFGGASLAMDTVENYLNIPINHYVSINMAGLKELVNAVGGIEVNNNLTFSQDGYDFTIG KISLDGEQALSYSRMRYEDPNGDYGRQERQRKVIEGIVQKVLSLNSVSNYQEILTAVSDN MKTDLSFDDMKKIALDYRSAFGKVKQDQLQGTGFMQDGVSYQRVDEQELTRVQQELKNQL NTK >gi|307679015|gb|GL456782.1| GENE 34 37998 - 39341 1970 447 aa, chain - ## HITS:1 COG:pli0044 KEGG:ns NR:ns ## COG: pli0044 COG0446 # Protein_GI_number: 18450326 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Listeria innocua # 1 445 1 445 454 363 45.0 1e-100 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSCGMQLYLEGKVKDVNSVRY MTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDI PGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDI LDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVV AVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALAT NARKQGRFAVKNLEEPVKPFPGVQGSSGLAVFDYKFASTGINEVMAQKLGKETKAVTVVE DYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYA DFFFQPAFDKPWNIINTAALEAVKQER >gi|307679015|gb|GL456782.1| GENE 35 39527 - 40219 471 230 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149011191|ref|ZP_01832496.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP19-BS75] # 1 229 1 223 226 186 44 8e-46 MNLLIIEDDPMVAYIHQKYLEKLIHQPTIFTAATIAEGLQLTKEKQPALVLLDVHLKDGN GLTYLATIRDEKIDTEVILITAANELENVKRSLHLGVLDYLVKPFSFERFQQSIENYQKK AAQFTLETKELSQTKVDQLFHSSQTNARKNEQALQNLSLEKGLTQATLQLLLKKIDEFTD YFTIQELSEASQLSHVSVRKYVLFLEKNNLLESKNSYLKVGRPYQSYRRI >gi|307679015|gb|GL456782.1| GENE 36 40200 - 41750 1647 516 aa, chain - ## HITS:1 COG:SPy1107 KEGG:ns NR:ns ## COG: SPy1107 COG3290 # Protein_GI_number: 15675090 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase regulating citrate/malate metabolism # Organism: Streptococcus pyogenes M1 GAS # 1 509 1 507 513 328 36.0 1e-89 MKRGGKLWCFLSVIFIATLIIMITFFYGVTTVQTIKEVRKNQEQALLAVGEQLAIEPNVI EALKNDHYSDELEAYTVRLGEIHQLDFIVIMNMQGIRLTHPDRQKIGKHFEGGDEVRALK GEEHLSVSQGSLGESLRGFVPVYDQGKQIGVVAMGIKMTSLSQLIERTKNDYTVSVLLSV GFGFILAIVVSYYLKKQLHDLEPREIARLLEERNAMLEETKDAILVIDTDQNILLANIEA TKMYHNITNSEENLLGKKLSALVLSPEKLVVHSKTEQFYRQNGQDYFVSIAPINVRKKTI GHVIFLKNATETFIVAEQLVSTTTYASALQSQSHEFMNKMHVIYGLVDLEDYEALKHYLA DLLKPEKEFAQRLAILVRNPILAGFLSGERIKFAEIKTQLAIEIYPEIPPNKRDEDTQNL IAIYRYIHRFLMEQTLPEEIIETIDYQPGSLTTTYSFAYPKEQLERFEQEFFTSYLARLL ENAEATLTWENQQNNWLVLRINVHYEGAEENEPIDY >gi|307679015|gb|GL456782.1| GENE 37 41898 - 43223 1551 441 aa, chain + ## HITS:1 COG:SPy1109 KEGG:ns NR:ns ## COG: SPy1109 COG3493 # Protein_GI_number: 15675091 # Func_class: C Energy production and conversion # Function: Na+/citrate symporter # Organism: Streptococcus pyogenes M1 GAS # 15 441 20 442 443 616 79.0 1e-176 MEKKLHATAANETDWRNKLTKTRIGSVTLPVYLVTASIILVTALLEQLPVNMLGGFAVIL TMGWLLGTIGGNIPILKHFGGPAILSLLVPSIMVFFNLLNQNVLDSTDILMKQANFLYFY IACLVCGSILGMNRKILVQGLMRMIVPMALGMILAMGVGTLVGTLLGLGWKHSLFYIVTP VLAGGIGEGILPLSLGYSAITGLPSEQLVGQLIPATIIGNFFAIMCSGLLSRLGEKRPEL SGQGQLIKITNSDDLSDALEEDKAPIDVKLMGAGVLIACTLFITGGLLQHLTGFPGPVLM IVVAAFLKYLNVVPKETQRGSKQLYKFISGNFTFPLMVGLGMLYIPLKDVVGMLSWQYFV VVISVVFTVIATGFFVSRFMNMNPVEAAIVSACQSGMGGTGDVAILSTANRMNLMPFAQV ATRLGGAITVITMTAIFRMLF >gi|307679015|gb|GL456782.1| GENE 38 43255 - 44424 1504 389 aa, chain + ## HITS:1 COG:SPy1110 KEGG:ns NR:ns ## COG: SPy1110 COG0281 # Protein_GI_number: 15675092 # Func_class: C Energy production and conversion # Function: Malic enzyme # Organism: Streptococcus pyogenes M1 GAS # 8 385 7 385 388 549 76.0 1e-156 MSTKDVKELAIEQAKKFGGKLEVCPKVPIETKADLGIAYTPGVAAVSSAIHEKKERAYEL TTKKNTVAVISDGSAVLGLGNIGPEAAMPVMEGKAALFKRFAGVDSIPLVLDTQDTEEII QTVKFLAPTFGGINLEDISAPRCFEIEQRLIDELDIPVFHDDQHGTAIVVLAALYNSLKL INKKIEDIHVVINGGGSAGLSITRKFLAAGVKHIIIVDRAGILSETDTALPPHHAEIAKL TNREHRTGDLATALEGADVFVGVSAPGVLKPEWIQQMNEQPVIFAMANPVPEIFPDEALA AGAYIVGTGRSDFPNQINNVLAFPGIFRGALDARAKKITIEMQIAAAKGIAKLIPDNELT PTNIIPDPFQEGVAKVVAESVRNAVKETN >gi|307679015|gb|GL456782.1| GENE 39 44497 - 45345 1026 282 aa, chain - ## HITS:1 COG:no KEGG:MPTP_1291 NR:ns ## KEGG: MPTP_1291 # Name: not_defined # Def: Cro/CI family transcriptional regulator # Organism: M.plutonius # Pathway: not_defined # 1 281 1 281 281 426 81.0 1e-118 MRVAGEKIKTARKKKKLSQAELAKGICTQATISNIENKNVCDSLDIFSSVCLRLDLQVEE CIEGSSEKKLESLLNKVEELCFYFKHDEAYDLLKDYPDDIESSNRILETKFFYYKGITSL LGKKNNSEALFYLHRGSEISRDINIYNILSMNAIGILYELEDDIEKAKVYYDKSLQLLSE FKLDYPLEQCRIYYNTAKFYSLIKDYAKSIELSDKGIEINRTHSSIYSLDCLLYEKAFNK QMLGLDAVEDYRIAYYFTRFFENKKLLTYIEKDMQEFNISFK >gi|307679015|gb|GL456782.1| GENE 40 45445 - 45507 184 20 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFDLLALLTGISVRGNAPHQ >gi|307679015|gb|GL456782.1| GENE 41 45817 - 46122 533 101 aa, chain - ## HITS:1 COG:SPy2112 KEGG:ns NR:ns ## COG: SPy2112 COG3906 # Protein_GI_number: 15675862 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 4 98 3 100 101 96 71.0 1e-20 MTEHNHDHDHEGHEHITLVDEQGNETLYEILLTVDGQEEFGKNYVLLYPAGIPEDEDVEL QAYSYVENAEGTEGDLQQIETDAEWDMIEEVFNTFMAEEEE >gi|307679015|gb|GL456782.1| GENE 42 46160 - 46573 476 137 aa, chain - ## HITS:1 COG:SPy2113 KEGG:ns NR:ns ## COG: SPy2113 COG0816 # Protein_GI_number: 15675863 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) # Organism: Streptococcus pyogenes M1 GAS # 1 133 4 136 139 191 71.0 3e-49 MGLDVGSRTVGVAVSDLLGWTAQGIEIIRINEEEENFGFERLGELVKEYEVTKFVVGLPK NMNNSIGPRAEASMAYGDKIQELFQLPVDYQDERLTTVQAERFLVEQADASRAKRKKVID KLAAVMILQNYLDAHSR >gi|307679015|gb|GL456782.1| GENE 43 46579 - 46848 491 89 aa, chain - ## HITS:1 COG:SPy2114 KEGG:ns NR:ns ## COG: SPy2114 COG4472 # Protein_GI_number: 15675864 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 89 1 89 89 128 73.0 2e-30 MGFTDETVRFDFDDNRKKAISETLETVYRALEEKGYNPINQIVGYLLSGDPAYIPRYQDA RNLIRRHERDEIMEELTKYYLANHGIDIK >gi|307679015|gb|GL456782.1| GENE 44 47284 - 48036 838 250 aa, chain + ## HITS:1 COG:lin0587 KEGG:ns NR:ns ## COG: lin0587 COG2966 # Protein_GI_number: 16799662 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 249 1 249 250 241 52.0 1e-63 MTPAHLDLLLETCLLAGKIMIESDAEMYRVEDTMSRIALASGNYRMVSYVTQTGLFVGID GTSTIRMVQVMKRGIDLEKISRVNQLSRAYVAGDFSLEELLNKLKVIDSEHRHFPISARI VSAAVVSATIMILFGGVWSDLFLTFLIGGCGYSLYYFSLKFLKIKFLSEFLASLFIGAAA ILSVKLGLGQSQDLIIIGCVMPLVPGVQITNALRDLLAGHYLSGVSRGTEALMTSGMIGF GIAFVFQLFY >gi|307679015|gb|GL456782.1| GENE 45 48051 - 48542 507 163 aa, chain + ## HITS:1 COG:lin0586 KEGG:ns NR:ns ## COG: lin0586 COG3610 # Protein_GI_number: 16799661 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 5 151 7 152 152 157 54.0 1e-38 MLGIVLVQFIFSFLASAAFAVIINVPRRSLVACGLTGSVSWMLYWVIVEVFSGNAALGSL IGAVGVAAVSYLFSKILKMPVTIFNIPGIVPLVPGGLAYQAVRNIVIGNYEKGAYFTVQA VMIAGAIALGLVASEVFNQNIRSFREKRESLGFIRRKRNKIKK >gi|307679015|gb|GL456782.1| GENE 46 48594 - 49460 945 288 aa, chain - ## HITS:1 COG:lin0922 KEGG:ns NR:ns ## COG: lin0922 COG3689 # Protein_GI_number: 16799993 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 1 288 1 279 279 267 48.0 1e-71 MIRFIILIGYMGLMMYLQISGELNQYINIHYNYLAVLSMVLAFIMAIVQLILWNQADPSM QKKHEDMHQHGGHEHHGHQHNLEKPSQRGLAYLLLSLPLIVGLLFPTVSLDTTIVEAKGF NFPVSKESVGDPDMQTQYLKPDTSMYFNKTDYDKQMAKAMKQYDGQSVISITDENYLEIM ELIYNYPSQFAGKRISYKGFVYNSKREESVDQFVFRFGIIHCVADSGVFGLLVHFPEHTQ FQNNDWVTITGTVELSYYPPFKRQIPTVQVEKVKADQAPKNQYVYRSF >gi|307679015|gb|GL456782.1| GENE 47 49479 - 50393 988 304 aa, chain - ## HITS:1 COG:SPy0576 KEGG:ns NR:ns ## COG: SPy0576 COG0701 # Protein_GI_number: 15674665 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Streptococcus pyogenes M1 GAS # 1 304 3 297 300 289 53.0 4e-78 MFQFLPNSVLQMSTIFLSIIIEALPFVMLGCLISGALHVFLTPERVKKVLPKNKFLSICV GSFLGFFFPSCECGIVPIVHQFVKKDVPTHTAFAFMLTAPIINPIVLFSTYVAFSGATKF VIWRVLGSMIVAWIIGIWLAYFRKESILTEKELAQIKEEQVAHTHEHVDEARSFWKNGWS ALTHSIDEFFDTGRYLIFGSLLAAIMQTYIPTGALMQLGHSKILAILVMLVIAATLSLCS EADAFIGSSLLSLFGTGPIVAFLVFGPMVDIKNLLMMKRYFKMSFIVQFVLIVALVVTIY AAVV >gi|307679015|gb|GL456782.1| GENE 48 50604 - 51410 1138 268 aa, chain - ## HITS:1 COG:SP1225 KEGG:ns NR:ns ## COG: SP1225 COG1235 # Protein_GI_number: 15901087 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Streptococcus pneumoniae TIGR4 # 3 268 2 269 269 377 69.0 1e-104 MDSEFAFNISVLASGSTGNSLFIETNQKKVLVDAGLSGKKITSLLAEVNRKPEDLDAILV THEHRDHIHGVGVLARKYKLDVYANEKTWQAMDPMIGKVDVAQKHIFEMGKVLTLGDMDI ESFGVSHDAIAPQFYRFHRNNRSFVVLTDTGYCSDHIRGTIENADAYLVESNHEIEILRA GPYPWSLKQRILGDKGHLSNDDGALVMADVLGDKTKRIYLGHLSKENNTKLHARMAMEST LKQKDLGVGEAFKVYDTDPDSASELFQI >gi|307679015|gb|GL456782.1| GENE 49 51467 - 52321 761 284 aa, chain - ## HITS:1 COG:BS_yycI KEGG:ns NR:ns ## COG: BS_yycI COG4853 # Protein_GI_number: 16081090 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 276 1 279 280 60 25.0 4e-09 MDFKRIEWIFILAFLGLNIFLFGIYREGQQEESNVSSSSQTESIESRLEKDNISYKGTLS SERLEGYYLSGEQTNFSAALKIQREKNKNFLRNGLQIADNTLTSVPSKNYFIDPKKIDKD LSTFLNEKNALLFGDEYQYLPEFSHLKEPTAEIVAAQSYKGIPFRDDTAKLSILADTSGE LWKISKYSQTHIENIEELRDKTDLYSNRDAIDTLYMNNRIPSNSKITFIKLAYSRIYKIR EKNVYVPVWFVGISTGEDSVEIEQVNAVSNTIITNNTVPKVEKH >gi|307679015|gb|GL456782.1| GENE 50 52321 - 53628 1006 435 aa, chain - ## HITS:1 COG:lin0317 KEGG:ns NR:ns ## COG: lin0317 COG4863 # Protein_GI_number: 16799394 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 12 420 12 429 440 62 21.0 2e-09 MKLSEWITRIGLILMVILSIYFSVNIWLNSAKKIPEMKSGSQVTTAVNEKAIGDVYLPLQ LIRITDGKAMQSNRETLISNVQNDIKMATFGKLTQVVTKNAEQLKRYNQMEQGIELLYQG PFLISDYASIYNLSINFTNFNELTDQYFTKIQLDFNENKIRFLDYDQANVYEAPMTVNKA RLMGIINKEGLQYQDVSENTLTKQGQCYLTNDMKLKKYSYILASQPVTRFRNAFFNETED IQTNEDSQDLTYTSKEERLFAEEKLGKIDFKGTLPEENKRDSIYNQSFSYVKRLGTNMGN LRYFDRTKDSVNYRTFVEGFPVFSNDLKGQVDIRITNNDGAAPSVTINTSVNTIQVPIPS EEEVTLESTEKLIKRLETAGAKKEKIQSAVIGYTWQTIEEVKQVVDLSPEWYVLYNNNWY TATDLVKQLPSLEVG >gi|307679015|gb|GL456782.1| GENE 51 53628 - 55457 2061 609 aa, chain - ## HITS:1 COG:lin0316 KEGG:ns NR:ns ## COG: lin0316 COG5002 # Protein_GI_number: 16799393 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 4 609 3 610 610 526 46.0 1e-149 MKKKVHFFQSVNFKIALSFILLLLIAIQIIGGYFIRELEATTISDFKKNMDSQVVQLSNT LSTQMSNKDLERSDVDANLKKALSDFSNADISEARIVDDKGIIRATNDLNQQNIIGKKND YRDLNDFTSKKYQALDNDKRVYVNVQPIQSPTGETVIGVLYVKSNLENKYQEITNTASIF FTASIIAAAISIIVTLLIARSITKPIGEMREQAIRIARGDYAGKVEVHGKDELGQLAETF NQLSERIEEAQETMEAERNRLDSVLTHMTDGVIATDRRGKVITINEMALSLLNVKNENVI GTSLLELLDIEEDYTLRKLLEEPDELLIDRSTSDREEDQMIIRVDFTMIRRESGFITGLV CVLHDVTEQEKNERERREFVSNVSHELRTPLTSMRSYIEALSEGAWENPEIAPNFLKVTL EETDRMIRMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRRE FTKRDLWVELDTDKVIQVLDNILNNAIKYSPDGGVITCRLVETHNNVVFSISDQGLGIPK KDLGKVFERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLPY EPYEEDWWE >gi|307679015|gb|GL456782.1| GENE 52 55464 - 56168 967 234 aa, chain - ## HITS:1 COG:lin0315 KEGG:ns NR:ns ## COG: lin0315 COG0745 # Protein_GI_number: 16799392 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 2 234 4 237 237 356 81.0 3e-98 MKKILVVDDEKPILEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDG LEVAREVRKTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGA TNAKEAEVTTQSELTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREH LLQTVWGYDYFGDVRTVDVTVRRLREKIEDSPSHPTYLVTRRGVGYYLRNPEQE >gi|307679015|gb|GL456782.1| GENE 53 56342 - 57007 966 221 aa, chain - ## HITS:1 COG:SP1778 KEGG:ns NR:ns ## COG: SP1778 COG0580 # Protein_GI_number: 15901607 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Streptococcus pneumoniae TIGR4 # 1 221 1 222 222 197 59.0 1e-50 MKKTIAECLGTFILVFFGTGTAVLGNGMEGIGTTGIALAFGLTIVAAAYSIGTISGAHLN PAVSIGMWLNKRITTMELIYYVVGQIVGGLIASFALLSILKGAGKSIENLGQNGVGELSV AGALTVEIILTFIFVLVVMTVTSAKKGNASLAGIVIGLTLTMIHLVGIPLTGTSVNPARS IAPAVFAGGSALSELWIFIVAPLIGGLLAALVAKSVLDTEE >gi|307679015|gb|GL456782.1| GENE 54 57161 - 58021 1167 286 aa, chain - ## HITS:1 COG:CAC1624 KEGG:ns NR:ns ## COG: CAC1624 COG1307 # Protein_GI_number: 15894902 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 4 281 2 277 280 214 41.0 2e-55 MNKEKIALLVDSGTDVPEALVKQYGMYVLPLQIIYPEKTYTDKVDITPEEVYQRLEKEIP STSLPDGATIQAIFDKIKEAGYEKVLAVTISSGLSGTYNVVRLLGEQTEGLDVFVLDTKN IGIGAGIQAIRAAELIETGLGWQELQQKLTEEVANAKVFFNVATLEYLQKGGRIGLVTSI LGNALKLNPIISCNEEGIYYTVAKSRGRKKSLDKTFELVTNFIGEAPRFRLAVAHGAAEE EAKAMMERLKAAFPQAEEIYFGTISPALVVHTGPGLLGVGIQLLND >gi|307679015|gb|GL456782.1| GENE 55 58014 - 58583 705 189 aa, chain - ## HITS:1 COG:no KEGG:EF1190 NR:ns ## KEGG: EF1190 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 189 1 189 189 330 100.0 2e-89 MDEIEKSLQNWGQQLENVHLPRWHELPDIELYMDQVITLIEKYLSPLITLEKHTLLTSSM VNNYVKHGLIPAPVKKRYNQKHLAFLIAITLLKQVLTLPEIKQGILFQGATVGIREAYNL FCQEQERAIYVIAAQAQEKEVQAKSQEPMGIEYLAVKAATMSFATKMFSEKVIELEQEYL KEMDEMTHE >gi|307679015|gb|GL456782.1| GENE 56 58710 - 59348 512 212 aa, chain - ## HITS:1 COG:SPy1044 KEGG:ns NR:ns ## COG: SPy1044 COG4478 # Protein_GI_number: 15675040 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 10 196 3 192 210 100 36.0 1e-21 MMRSKLRLRETLGLICLFLTIVALSITITINFRPLYLFDIQHLNILKDVEVDRVTLIKNY DHLMMYLNNPFEKTLVFPDFPMSDSAAFHFYEVKKLFLLCYGVLLVTLMPSVLYLKYLVK NQRLWTLIRPFQWGMFLPVLFGFFMLIGFDQFFIAFHGLFFNNDAWLFNPLTDPIINALP EAYFMHCFILFFVLLEGLFLIGVLIGKRSLKK >gi|307679015|gb|GL456782.1| GENE 57 59351 - 60121 1096 256 aa, chain - ## HITS:1 COG:SP1407 KEGG:ns NR:ns ## COG: SP1407 COG0647 # Protein_GI_number: 15901261 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar phosphatases of the HAD superfamily # Organism: Streptococcus pneumoniae TIGR4 # 5 256 3 254 257 317 64.0 9e-87 MKKDYQGYLIDLDGTIYLGKEPIPAGKRFVEQLQEKDLPFLFVTNNTTKSPETVAQRLAN EFDIHVPASLVYTATLATIDYMKETNRGKKVFVIGEAGLIDLILEAGFEWDETNPDYVVV GLDTELSYEKVVLATLAIQKGALFIGTNPDKNIPTERGLLPGAGSVVTFVETATQTKPVY IGKPKAIIMERAIAHLGVEKEQVIMVGDNYETDIQSGIQNGIDSLLVTSGFTPKSAVPTL PTPPTYVVDSLDEWTF >gi|307679015|gb|GL456782.1| GENE 58 60127 - 60756 828 209 aa, chain - ## HITS:1 COG:lin2501 KEGG:ns NR:ns ## COG: lin2501 COG4470 # Protein_GI_number: 16801563 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 51 137 3 89 91 127 65.0 1e-29 MTDKKTTEKKETETAATFTEELTAVLEEIKEEPVKEKKKGEIVTIVNETDIQIGEREYRI VKNHRDAFDPERLGERFSEVLARYDYIVGDWGYEQLRLRGFFDTSNRRAAPDQRIDTLED YLYEYCNFGCAYFVIERTGERKEKTTHRRRRHKKNNRSNAFVEEKSAPANKNSKPVIRTR KEENKKTTTPKQPSPKKSGKGFTIRQREE >gi|307679015|gb|GL456782.1| GENE 59 60791 - 62173 1532 460 aa, chain - ## HITS:1 COG:lin2502 KEGG:ns NR:ns ## COG: lin2502 COG0737 # Protein_GI_number: 16801564 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Listeria innocua # 1 457 2 457 463 307 35.0 3e-83 MEEIVLFHTNDLHSHFENWPKIRRLVKAKRSLYQKEGKTVVTIDLGDFSDRCHPLTEATD GRANVAIMNTLAYDLVTIGNNEGIGNSKKQLEHLYDQATFEVVLANLEDPKTQTLPDFCQ AYKIMTTKEGTKLGFIGLTAPFPLTYNPNGWTIKQVEAVLPQLITEVAPQCDVLILLSHL GIDTDFMIAANYPEIQVILGSHTHHLFKDGEKINHVQLAAAGKYGQYIGEVHLFVDADTK QVTSYAKTIETASLEEQATDAKEIAGYLTEGHRLLQAQQIAQIPETLSTDLRQPHAFITV ALKALKEAGQTEAAVLNNGLFLADLPEGIINADQLHEALPHPMHLIKVTLKGSDMSRLIR EMEKSRQFLRKFPIRGMGFRGKIFGELCYDGIRFERNSQTVFWQGKPIQPEQKYTLTTVD HFQFVPFFPTIELVGEVEFLFPDVLRTVVANYLHAHYPIK >gi|307679015|gb|GL456782.1| GENE 60 62298 - 63986 1965 562 aa, chain - ## HITS:1 COG:SP0613 KEGG:ns NR:ns ## COG: SP0613 COG0595 # Protein_GI_number: 15900521 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Streptococcus pneumoniae TIGR4 # 1 552 1 552 553 693 60.0 0 MSTIKIVPLGGVRENGKNMYVAEVEDEIFVLDCGLQYPENELLGIDVVIPEFTYLEENSE RIAGVFLTHGHADAIGALPYLLSKIQVPVFGTELTIELAKLSVNSHAETKKFKDFHVIDP HTEIDFGQATVSFFKTTHTIPDSIGVSIKTKEGNIVYTGDFKFDQSAIEMYQTDYGRLAE IGKEGVLALLSDSSNAENPAQVASEAQIADEVFDTIRYWEGRIIVACVASNLQRVQQVLN AADRSGRKVVLTGQDFERIIRTAMKLEKLQLPSEDLLVKPKEMKKYAPEQLLILETGRMG EPIKSLQKMANNTHGVVRIEEGDLVYITTTPTTAMETTVAKTEDIVYRAGATVKQISDNL RVSGHANPNDLRLMLNLMKPKYFIPVQGEYRQLAAHADLAHEIGMPYKDIFITGRGDILE YTKGRMSVAGSTTAENIMIDGIGVGDIGNIVLRDRRILSEDGIFVAVVTINRREKRIVSP AKITSRGFVYVKTSKDLMKESSNIVTEIVEKHLESDDFEWSKLKQEIRENLSRYLFEQTK RRPVILPVIMEATQRKRPKNNA >gi|307679015|gb|GL456782.1| GENE 61 64017 - 64889 956 290 aa, chain - ## HITS:1 COG:L0093 KEGG:ns NR:ns ## COG: L0093 COG0329 # Protein_GI_number: 15673602 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Lactococcus lactis # 3 288 10 295 297 375 65.0 1e-104 MDLTNATIITAMVTPFQESGEIDFDKLPQLVDYLLANHTEGVILAGTTGESPTLTHEEEL QLFQRMIELIDGRIPIICGVGTNDTRDSVAFVKELATIAGIDAVLAVVPYYNKPNQEGMY QHFKTIAEASELPIILYNVPGRTAACLEVETTLRLAQLEKIVAIKECAGLDAITELIERA PKDFLVYTGEDGLAFATKALGGQGVISVASHVFGSSMYEMYQALEQGNLPEAAKIQRQLL PKMNALFSVPSPAPVKAALNHLGIPVGNLRLPLVACTPEEEQRIIRTLEI >gi|307679015|gb|GL456782.1| GENE 62 64923 - 65990 1246 355 aa, chain - ## HITS:1 COG:L66199 KEGG:ns NR:ns ## COG: L66199 COG0136 # Protein_GI_number: 15673604 # Func_class: E Amino acid transport and metabolism # Function: Aspartate-semialdehyde dehydrogenase # Organism: Lactococcus lactis # 4 350 3 348 358 468 67.0 1e-132 MGKEYHVAVVGATGAVGTRMIELLAETSLPIASVRLLASKRSAGQEIQFKGQPLIVEELV PESFEGIDLALFSAGGSISEKFAPEAVKRGAVVVDNTSHFRMAKDVPLVVPEVNPEALKN HQGIIANPNCSTIQMMVALEPIRQAFGLERIIVSTYQAVSGAGIRAINELKEQAEDFLEG KPVSEWSAEILPAGSDEKHYPIAFNALPQIDVFSEAGYTYEEWKMMNETKKIMGDNKLKV VATCVRIPVISGHSESVYIEVKQADASVSAIQELMAQAPGVILQDEPSEQLYPQALNSVN QKETFVGRIRQDVDVKNGFHLWIVSDNLLKGAAWNSVQIAETLHEMNLLRVPEND >gi|307679015|gb|GL456782.1| GENE 63 66197 - 66655 746 152 aa, chain + ## HITS:1 COG:SP0340 KEGG:ns NR:ns ## COG: SP0340 COG1854 # Protein_GI_number: 15900270 # Func_class: T Signal transduction mechanisms # Function: LuxS protein involved in autoinducer AI2 synthesis # Organism: Streptococcus pneumoniae TIGR4 # 4 150 7 157 160 177 55.0 4e-45 MARVESFELDHNTVKAPYVRLAGTEQNGDALVEKYDLRFLQPNKDALPTGALHTLEHLLA VNMRDELKGIIDISPMGCRTGFYMIMWDQHSPQEIRDALVNVLNKVINTEVVPAVSAKEC GNYKDHSLFAAKEYAKIVLDQGISLDPFERIL >gi|307679015|gb|GL456782.1| GENE 64 66739 - 67473 832 244 aa, chain + ## HITS:1 COG:lin0323 KEGG:ns NR:ns ## COG: lin0323 COG0778 # Protein_GI_number: 16799400 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Listeria innocua # 1 244 1 244 245 269 53.0 4e-72 MNQTIEQLLSHRSVRHFKKQALTDKQKQQLITAAQAGSSSNFLQAYTIIEIKDPELRREL GRLANCEDYVVNTGVFYVFVADLYRHATILSKEGQSLEPLKTPESLLVAAVDTTIAAQNM AIAAESMDLGICYIGGIRNDLDTVAKRLSLPELTVPLFGLTIGVPETLNGVKPRMPFENI LSENHYQSDKLTDMHTYDELLKDYYASRSSNAQTADWSQKSLSYFSYNRRPEVKTFLQKQ GFDI >gi|307679015|gb|GL456782.1| GENE 65 67531 - 67779 498 82 aa, chain - ## HITS:1 COG:no KEGG:EF1180 NR:ns ## KEGG: EF1180 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 82 1 82 82 88 100.0 8e-17 MADLKGRFDDAKDKVEGTAKEAQGKVTDDKGKELEGKAQSTFADVKDKARDAGDDLKEGA EKLTDKVKEGFEDLKDKFSKDK >gi|307679015|gb|GL456782.1| GENE 66 67870 - 68748 1223 292 aa, chain - ## HITS:1 COG:CAC1523 KEGG:ns NR:ns ## COG: CAC1523 COG1940 # Protein_GI_number: 15894801 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Clostridium acetobutylicum # 5 284 2 281 288 342 56.0 5e-94 MTEKLLGSIEAGGTKFVCGVGTDDLTIVERVSFPTTTPEETMKKVIEFFQQYPLKAIGIG SFGPIDIHVDSPTYGYITSTPKLAWRNFDLLGTMKQHFDVPMAWTTDVNAAAYGEYVAGN GQHTSSCVYYTIGTGVGAGAIQNGEFIEGFSHPEMGHALVRRHPEDTYAGNCPYHGDCLE GIAAGPAVEGRSGKKGHLLEEDHKTWELEAYYLAQAAYNTTLLLAPEVIILGGGVMKQRH LMPKVREKFAELVNGYVETPPLEKYLVTPLLEDNPGTIGCFALAKKALIAQK >gi|307679015|gb|GL456782.1| GENE 67 68974 - 69186 232 70 aa, chain - ## HITS:1 COG:no KEGG:EF1177 NR:ns ## KEGG: EF1177 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 70 1 70 70 89 97.0 4e-17 MASWFWLSGGLAVICFMFFLFSLLTSMSFIQHAKEPRSILKETLLSWLMLLLSGGWITIG LLLYFSLKNQ >gi|307679015|gb|GL456782.1| GENE 68 69179 - 70243 764 354 aa, chain - ## HITS:1 COG:no KEGG:EF1176 NR:ns ## KEGG: EF1176 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 354 1 354 354 633 98.0 1e-180 MSRKKVGVFCLFLFFTFFIIVPKVEATEEMKTKFTVTPVLPENQVSGTSSYYDLILAPKQ SSTIVLDIKNKTDEKLSIVLTLANASTNDNGLIVYNDFDKPLDSSLKVPLTDLVTLENEE VSVPPHQTVSAKMKVKGLDKPIKGVVLGGVYAHLKDEKTEEENQTMGLTSRYGFNVAIAM RSAENAPLTEVNQLKLVKVTPTIALGSKSLKAVIQNPYAAIFPEVRLEGQVIKKGSSKKI AQRTLKNVRFAPNSSMNFHLDLGKQPLDAGTYIFTGRAILQQDEQRSWPFQQEFTINTRE AKKLNQEATVKWVLPTWWLPTFYTLLVITIGAIYSVIWRNNYQKTSEKESENNG >gi|307679015|gb|GL456782.1| GENE 69 70481 - 70750 480 89 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29375747|ref|NP_814901.1| ribosomal protein L31 [Enterococcus faecalis V583] # 1 89 1 89 89 189 100 7e-47 MKQDIHPNYQPVVFMDSTTGFKFLSGSTKGSSETVEWEDGNTYPLLRVEVTSDSHPFYTG RQKFTQADGRVDRFNKKYGLKDENANPDA >gi|307679015|gb|GL456782.1| GENE 70 70851 - 72125 1273 424 aa, chain - ## HITS:1 COG:BH3781 KEGG:ns NR:ns ## COG: BH3781 COG1158 # Protein_GI_number: 15616343 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Bacillus halodurans # 1 419 5 423 423 609 71.0 1e-174 MAELENSTLKDIYAYAKEFKIPYYSQMNKKELSLAVIRAQAEKQGFFFMEGILDIVSQDG YGFLRPINYGPSAEDIYISSSQIRRFGLRNGDKVAGKARPPKESERYYGLMHVESVNGKD PEEAKERPHFPALTPLYPEKQLTLETTAGRLSTRMIDVFAPIGFGQRGLIVAPPKAGKTS VLKEIANGITENHPDVELILLLIDERPEEVTDLERSVKGDVVSSTFDQQPQNHTRVAELV LDRAMRLVEDKRDVVILMDSITRLARAYNLVVPPSGRTLSGGIDPAAFFKPKRFFGAARN IEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLSRELAERRIFPAIDIKKSSTR KEELLMTPEQLEETWKLRNNMSGDSLEYTDQFIKMLKRTQNNQQLFEVFHDVSFGKQIKR NPKR >gi|307679015|gb|GL456782.1| GENE 71 72140 - 73432 1909 430 aa, chain - ## HITS:1 COG:L113067 KEGG:ns NR:ns ## COG: L113067 COG0766 # Protein_GI_number: 15672294 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Lactococcus lactis # 1 418 1 420 421 544 68.0 1e-154 MKKIVINGNRPLKGEVTISGAKNSVVALIPAAILADSPVTLDGVPDIQDVHSLIEILEIM GAKITFENNTLIIDPTEVVSVPMPKGKINSLRASYYFMGSLLGRFGEGVVGLPGGCYLGP RPIDLHIKGFEALGAHVTNEHGAMYLRTDEAGLQGTRIFMDMVSIGATINVMLAAVKAKG KTIIENAAREPEIIDIATLLNNMGAKVRGAGTDVIRIEGVEELHGCRHSIIPDRIEAGTY LAMAAAMGEGIKVRNVIYEHLESFIAKLQEMGVKMTIEEDMIEVHPSHDLKMTTVKTYPY PGFATDLQQPLTPLLLKAQGTGEIIDTIYAQRNKHIPELVRMGADASVEGNMIILNGPNQ LHGAEVVASDLRAGACLVTAGLMAEGTTTIYNVEYILRGYDHIIEKLTALGADIQMLETE EQEGPFEVDQ >gi|307679015|gb|GL456782.1| GENE 72 73668 - 74537 1384 289 aa, chain - ## HITS:1 COG:SP0605 KEGG:ns NR:ns ## COG: SP0605 COG0191 # Protein_GI_number: 15900513 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Streptococcus pneumoniae TIGR4 # 1 289 1 293 293 388 71.0 1e-108 MPVVSGAEFLKAARKGGYAVGGYNTNNLEWTQAILEAAEAKKAPVLIQTSMGAAKYMGGY KVAKDMITNLVDSMNITVPVAIHLDHGDYEAALECIEVGYTSIMFDGSHLPFEENLKLAK DVVEKAHAKGISVECEVGSIGGEEDGIIGTGELADIEECKQMVATGIDYLACGIGNIHGQ YPENWKGLAFDHLQAIAEAVGSDVPLVLHGGSGIPQEQIEKAISMGISKVNVNTEFQLSF AKATREYIEAGKDLEGKGFDPRKLLAPGKAAIIKDAEEHIDWFGSANKA >gi|307679015|gb|GL456782.1| GENE 73 74740 - 75696 928 318 aa, chain - ## HITS:1 COG:lin2365 KEGG:ns NR:ns ## COG: lin2365 COG1284 # Protein_GI_number: 16801428 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 12 293 9 290 300 249 46.0 4e-66 MSRLVSTYQRNESIKKIAVMAITALTSAVGLNFFLIPAKVFSAGMNGIAQIIATLLYTNL GIHINTGIFILFLNIPVFILGFVKLGKQSTILSFINVIGISVVTMFVPIVTVTTNPLMNA IMGGVLVGVGAGLSLKMGFNTGGMDIISLILSKTTGKTVGNFMFLLNGIIVLLAGFVFNW ESALYTIISIYCLSQVVDMIHTSHQKVTAMIVTTRPEAVALEVSQQIARGMTLLPSIGGY SGAEGRMIMMVITRYELYDLEQAVYSIDENAFVNILPTQSVLGRFANEDEQRIFHSTGTF PELQSYKVKRYPPKKKLK >gi|307679015|gb|GL456782.1| GENE 74 75932 - 76426 731 164 aa, chain + ## HITS:1 COG:BS_yitK KEGG:ns NR:ns ## COG: BS_yitK COG1666 # Protein_GI_number: 16078166 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 3 164 2 163 163 171 58.0 4e-43 MAAKEASFDVVSEVNMEEVKNAIQIALKELKNRFDFKGSIADIKLENDKLVVVAEDDYKV EQVKDILFGKLVKRNVPIKNIHFSESEKALGGTARQYGDLISGIDKENAKKINTAIKNSG IKVKSQIQEDKIRVTGKSRDDLQKVMALLRELDLPMALEFNNYR >gi|307679015|gb|GL456782.1| GENE 75 76423 - 77127 749 234 aa, chain - ## HITS:1 COG:no KEGG:EF1164 NR:ns ## KEGG: EF1164 # Name: not_defined # Def: HD domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 221 1 221 227 401 97.0 1e-110 MKLFERIHQDTEIRQIYDAIGQMEDEEAGWAYHNWFHVNNVVAMTEMILKQLAVSEEYLE AAKIAALLHDVGALQGKAGHALRGKQFAEAYFRKQKICLPYQEEILSSIENHSNGFDSEE LMTLALIISDKLDITTSRVAKAGYFVPGMRQLQFLKKIEIMLSEQEVCVAFAAEEELDLE ELNAFYFMPKVFKAIAAFSEKIQRRPIVLLNNQEWPVPKLKKSFNCSLTVEGFF >gi|307679015|gb|GL456782.1| GENE 76 77149 - 78114 1131 321 aa, chain - ## HITS:1 COG:L142722 KEGG:ns NR:ns ## COG: L142722 COG0252 # Protein_GI_number: 15672718 # Func_class: E Amino acid transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D # Organism: Lactococcus lactis # 1 320 2 322 323 359 58.0 5e-99 MKTILVLHTGGTISMSKVAGGSVAPNEKNPLMEQEALFSGKVHLVVEDIFNIPSPHMTLE RMFQLKERIQKAYSEPIDGVVITHGTDTLEETAYFLDITLEKKIPIVLTGAMRSSNEIGS DGLYNFISAIWTACSDESYDKGVLVVMNDEIHTARYVTKTHTTNVATFRTPTFGPIGTIA KERAFFAKEVLPQEVCDVSSVKGNVHVVKAYAGMGERMFELLNTPETDGLVIEALGAGNL PPETLPALQKMLDNGIPVVLVSRCSNGIAEDIYDYAGGGVGLKKMGVVFARGLNGPKARI RLIVGLNSEKNPAELKEFLEQ >gi|307679015|gb|GL456782.1| GENE 77 78111 - 80492 2000 793 aa, chain - ## HITS:1 COG:lin0195 KEGG:ns NR:ns ## COG: lin0195 COG1199 # Protein_GI_number: 16799272 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Listeria innocua # 6 785 5 779 779 761 46.0 0 MKSTRKIAVRQVVEFILRRGSIDSRHVSEHTPQEGSRLHRMLQKEAGSLYQKEVSLKIEV PLNGHNYCVEGRADGIFVKETGQVVIDEIKTSEPAFEELPPEKVELFWYQAMCYGHMYCQ QEQLSEITLQLTYYQTTTKQITRQERHFTEAALAEFFTDLMKRYEQWVIFKEEWRILRNK SLKNLSFPYGEYRKGQRELAVAVYKTILSKQRLFVEAPTGTGKTMSTLFPAMKAIGEEEG ERIFYLTAKTITRQVAEDAVKALSEKQAQTKSITLTAKDKICFLTERNCTPEHCPFADGY YDRLNEGLWDLLQHENHLTREVIERYAQKHQLCPFELSLDASLWCDLIIGDYNYLFDPTV YLRRFFEEPQSAEENIFLVDETHNLVNRSREMYSAAISRNAVLQIQKRLQKESIQLKRAC QKVLTTFDDIEAICEEKDTDFFAQRAPIDSLVKQIHRLTEVIAEWLPENQHIEELASILS FYFDCLSYLRISEYYDNGFYTSISLRNYDCVVKQFCVDPAYLLSQRLDKGKASILFSASL TPLNYYQEVLGGGEESLRYRIPYPFPEENQLLMIGSHLQTTYKNREKSYPQISELLGKLS ETKTGNYLIFFPSYAYMDDVYQVFSQRYPQVKTQIQGTDLNEKEREAFLAEFKENPQETF IGFCVLGGIFSEGIDLKGTRLIGTIIVSVGLPQMNPEQELIRTFYQEERGQGFQFAYQIP GMNKVLQAAGRVIRDAQDKGFVLLLDERFELPSVQRFFPPHWLAHRKANTNEQLIQQVKQ FWLKNKENKGGNK >gi|307679015|gb|GL456782.1| GENE 78 80610 - 81128 589 172 aa, chain - ## HITS:1 COG:no KEGG:EF1161 NR:ns ## KEGG: EF1161 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 172 1 172 172 318 98.0 4e-86 MKKILLVLNHSLAGFGSDEQAQLKPSGKKAPLGPGVTLLPFLQKQGAEIVATLYCGDQYY LENEEEVAKKFIGFAKKFHANAVLCGPAMHYPNFGEMAAHLACKFNAAGIPAIAAMAEEN PAVSHYYQQVPIVKMPKKGGIGLNNSFKQMAQLVVAKANGKETKQLEETSCF >gi|307679015|gb|GL456782.1| GENE 79 81146 - 82501 1492 451 aa, chain - ## HITS:1 COG:BS_licC KEGG:ns NR:ns ## COG: BS_licC COG1455 # Protein_GI_number: 16080909 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Bacillus subtilis # 1 430 1 433 452 342 40.0 1e-93 MQKFLDWLERVLTPLAKVIGENKYLVAIRDGFLLSTPLLIVGSVFLLIANFPLPQWDTWM SHLLGKDWATMMSVPASASFDVMTILAVVGIAYSLGKQFNVDAMQAGIIALVSFFIVTPY QTLFTPENSSKVYEVTSLPLKWMGSSGLFLGMIVALIATRLFVAIVRKGWTIKMPEGVPP TVVKSFEALIPSFLVVTLMFLVNWLAALTPYGNLQDVIFEFLQTPLLSLGNTLGAMSIAY LFLHFFWFFGINGGSVVGAVFNPVLRALSVENLQAFKDGHEIPNIITGQFQDMFATFGGA GSTLSLIIVMVLFCKSQRIKKLSQLSLIPGVFGINEPIIFGLPIVLNPILLIPFVLVPAI NIIIAYFAMDWGLVPLTNGIQLPWTTPPIISGFLVSGWQGSILQALLLVLGMFIYYPFIR VMDDQYLREEWKAQEEESEEIDFDSFDFDDL >gi|307679015|gb|GL456782.1| GENE 80 82520 - 82849 546 109 aa, chain - ## HITS:1 COG:CAC0384 KEGG:ns NR:ns ## COG: CAC0384 COG1440 # Protein_GI_number: 15893675 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIB # Organism: Clostridium acetobutylicum # 5 104 3 100 102 79 46.0 1e-15 MSKKQIYLFCDAGMSTSIMVNKMMEVVEKHQMPLMITAFPIARAQEVVEAEKPVAILLGP QVRFLLEKTKEQFAPQGIPVAAIAPEIYGMMDGEKALKEALRLIKQNKK >gi|307679015|gb|GL456782.1| GENE 81 82869 - 83822 1218 317 aa, chain - ## HITS:1 COG:CC2359 KEGG:ns NR:ns ## COG: CC2359 COG1446 # Protein_GI_number: 16126598 # Func_class: E Amino acid transport and metabolism # Function: Asparaginase # Organism: Caulobacter vibrioides # 4 281 20 313 327 139 32.0 1e-32 MTWGAIATWRMAHDGLLKAAEELQQGGAAGTAVEQLIKEVEDYPFYKSVGYGGLPNEEGI LEMDAAYMDGDTFAIGAVAGITDVKNPISVAKALSKEKFNSFRVGAGATKYSMLHGFERK NMLTERANQWWQKRLKEIQENQLNPYDGHDTVGAITLDQTGSMAAGTSSSGLFMKKAGRV GDSPLSGSGFYVDSEIGGAAATGLGEDLMKGCLSYEIVRLMGEGCSPQQACDQAVYAFHE KLTQRYGKAGAFSLVAMNKQGDWGVATNVEFTFTVGTDMQQPEIYIANPGKNHTTEIQPI SQEWLAAYEKRIKAPIE >gi|307679015|gb|GL456782.1| GENE 82 83992 - 85290 1338 432 aa, chain - ## HITS:1 COG:CAC2723 KEGG:ns NR:ns ## COG: CAC2723 COG0624 # Protein_GI_number: 15895980 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Clostridium acetobutylicum # 2 429 3 463 465 256 34.0 5e-68 MKIKEEIAAQKDLFYEDLNKIIAIRSVKGSPKKEAPFGEGPKRALEETLKLAERYGFQTE IVNDAVGYAQWGTAEEYLGIIGHLDVVPEGSGWSVPPFQLTKKNQRLYGRGILDNKGPIL ACLYGMKLLKELGYQPKKTIRLMFGTDEESGSGDIPLYLEKENAPVFGFTPDCKYPVVYG ERGIVNYEITTTIPDDSSEQIGQIIGDQAKDHVPDQLSVVIAGKTTAITGKRAPSNAPEL GKNAITLLAQKISEEQLVKGILLQYFDWLTASFHEKHYGEGVALDFKDQDSGQLILTPYA LEKRGQQLVLSLAVRYPVSITENEVTTQLTKALFPESEVTVIRLLPSTLFPKDERNVQKL TKVYEQITGLDGTPVTTTGATYARFMPNIVAFGPSFPGQKGIAHNQDEYMDEKDLLLNLE IYMQAMIALTEA >gi|307679015|gb|GL456782.1| GENE 83 85287 - 86051 705 254 aa, chain - ## HITS:1 COG:BH3917 KEGG:ns NR:ns ## COG: BH3917 COG2188 # Protein_GI_number: 15616479 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 7 229 26 251 261 124 32.0 1e-28 MTENAPKFKQISAEIEKKIRDGLYVSAQKLPSEYDLAKEYNCSRLTIRKAIDDLIRKNIL VKRHGKGSYVMSQAKIQSGRAGLQGFTEAAKAYGKKSQTEVISFEEVVHPAEKIREALQV GKNEAIYELIRRRMLDGEPMTVEKIYLPQAYVQGHTKQDFEGSLFCLIEKNVEIAYSHQE IEAILVEAEISELLNVPVGQPLLQVHSITYALDATPILYDVSLYRADRYTFKNTLTRYSP SENNQVELGGSWNE >gi|307679015|gb|GL456782.1| GENE 84 86208 - 86855 654 215 aa, chain - ## HITS:1 COG:BH1698 KEGG:ns NR:ns ## COG: BH1698 COG0177 # Protein_GI_number: 15614261 # Func_class: L Replication, recombination and repair # Function: Predicted EndoIII-related endonuclease # Organism: Bacillus halodurans # 1 213 1 213 218 288 64.0 6e-78 MLSKEKTMEAIEIMYEMFPNAECELKHKNPFELLIAVILSAQATDVSVNKATPGLFAAFP TPEALAAAPVEEIIAKIKTIGLYRNKAKNIKACAQQLLERFNGEVPQTRDELVSLPGVGR KTANVVMGDAFGEPAFAVDTHVERVSKRLRICKLNANVTEVEQTLMRKVPKELWVKTHHT MIFFGRYHCLARAPKCEACPLLYMCQEGKERMKGK >gi|307679015|gb|GL456782.1| GENE 85 86870 - 87586 941 238 aa, chain - ## HITS:1 COG:BS_dnaD KEGG:ns NR:ns ## COG: BS_dnaD COG3935 # Protein_GI_number: 16079292 # Func_class: L Replication, recombination and repair # Function: Putative primosome component and related proteins # Organism: Bacillus subtilis # 9 232 11 230 232 124 35.0 2e-28 MLSIREYLEAGETTISNLLFDHYQKIGLKDDEFLFLLQLFRSQNAGDLFPDLMAIAETMG KTPDTIYKLLNQLVSRGFIRIETQQNQKGQMMDTYDLLPVFQKIQLFLQTSKEKQVVANH EDEIKQLYQGFEKEFGRPLSPIELEMIGQWLNTDHYSPELIRLALREAVLNQAYSLKYID RILLAWERKNITTKEQVAADQKKRKDSMIQNEIEQQGQTQESLPKVTLHNWLNPEDSE >gi|307679015|gb|GL456782.1| GENE 86 87619 - 89115 1789 498 aa, chain - ## HITS:1 COG:lin1999 KEGG:ns NR:ns ## COG: lin1999 COG2317 # Protein_GI_number: 16801065 # Func_class: E Amino acid transport and metabolism # Function: Zn-dependent carboxypeptidase # Organism: Listeria innocua # 3 496 6 499 502 501 49.0 1e-141 MKEAVFLQEVKEIQLLKNALTLLDWDSSTGMPEKSSPFRGEVEGYLTGLYFERSIGPVIQ EALAYFETRPEELSELGKLVFEKVKEEYALNKNVPAERMQEYVKVLNQAHTDWLKARAAQ DFGLLEETLTKVVAFQKEFIPYWQKEEKTPYDVLLNQFEPGMTVEKLDQVFDQVKQGIQE IRTVLAEKGTPPRTDFLSRKMTKEQQRRFVIGVVEQLGYDFSKGRLDDTVHPFMTALNRN DARITTRWEENNFSMATFGVIHEAGHGMYEQNFDPKFDFTPLSEGASMGIHESQSLFNEI IIGSNRAFWQKQYPFFQDCAEGTFDDIAFEDFYASLKETKASLIRIDSDSLTYPLHIIIR YEIEKMLFNGSLEVADLPKVWNEKYQEYLGVSPENDLEGVLQDVHWSGGSFGYFPSYALG YMYAAQLFHAMKQELSVDEILASEDYSDIRKWLTQHIHQYGASRKPNQLIYDATGEELNP SYLIDYMKAIYFDVYQVQ >gi|307679015|gb|GL456782.1| GENE 87 89134 - 90297 1446 387 aa, chain - ## HITS:1 COG:lin2000 KEGG:ns NR:ns ## COG: lin2000 COG0116 # Protein_GI_number: 16801066 # Func_class: L Replication, recombination and repair # Function: Predicted N6-adenine-specific DNA methylase # Organism: Listeria innocua # 5 387 2 382 382 533 68.0 1e-151 MTKEKTFKLVATAASGLEALVGKELRDLGIPCEVENGRAVFEGTVETIATANLWLRTADR IKIVVGEFNAYSFDELFEKVKALPWEDYLPLDAEFPVAGKSIKSKLYSVPDCQAITKKAI VNRLREVYHRPATVPLTETGALFKLEVALLKDKVTLTLDTTGPSLFKRGYRIEKGGAPLK ENMAAALVMLTNWRKDRPFYDPVCGSGTICIEAALIGHNIAPGFNRSFTCETWDWVDPAI FEKVRNEAEAKADYDVELDICGSDVDGRMIEVARANAEEVGLGDSITFKQLALKDFTTEK EYGVMVANPPYGERLGEEESVRRLYKEMGHVFRPLTTWSKYILTSDLAFEEYYGAKATKK RKLYNGALRTDLFQYWGTRPPRKPRED >gi|307679015|gb|GL456782.1| GENE 88 90809 - 90988 111 59 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MISLSTNTTSISACASMDFPQLAKANRDHPKITNLFKRTAKIYTLQQVSAILTNAFCSS >gi|307679015|gb|GL456782.1| GENE 89 91011 - 91421 572 136 aa, chain - ## HITS:1 COG:lin2002 KEGG:ns NR:ns ## COG: lin2002 COG3599 # Protein_GI_number: 16801068 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division initiation protein # Organism: Listeria innocua # 9 106 13 111 113 89 54.0 2e-18 MANLVYSPKDILQKEFKTKMMNGYDPIEVDEFLDNVIKDYEAYNKELLSLQEENSRLMAK LDQLSKAQPTPRVAQEVPKSAAVTNFDILKRLSNLEREVFGKKLDETPSTPVTPSAPSMT AEPANHDVDNAQTRQF >gi|307679015|gb|GL456782.1| GENE 90 91515 - 92057 594 180 aa, chain - ## HITS:1 COG:BH1768 KEGG:ns NR:ns ## COG: BH1768 COG4474 # Protein_GI_number: 15614331 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 4 175 1 172 189 150 43.0 1e-36 MEMIKTLYVTGYRSFELGIFQGKDPKITVIKNVLKKELASYIEAGVEWILISGNLGVELW TAEVVGELKMEYPEVQLGLLYPFKDFGNNWNEQNRELLSKAESLADYINSVSHQPYQSPA QLKMHTKFLLEHSGGSLLIYDKEYSGKTEYFLKDAQHFSEREPYDIRLITMDDLQNSVID >gi|307679015|gb|GL456782.1| GENE 91 92120 - 92737 537 205 aa, chain + ## HITS:1 COG:SPy1648 KEGG:ns NR:ns ## COG: SPy1648 COG3331 # Protein_GI_number: 15675520 # Func_class: R General function prediction only # Function: Penicillin-binding protein-related factor A, putative recombinase # Organism: Streptococcus pyogenes M1 GAS # 9 200 2 191 199 210 55.0 2e-54 MTFHYPNGIPYNHHEAQSPKKQVKKKRPVEFGNRGMDFEEAINQSNQYYLLNKQAVVHKK PTPVQIVKVDYPKRSAAVIKEAYFRQASTTDYNGVYQGRYIDFEAKETKNTTSFPFKNFH QHQIDHMEQCIAQQGICFVLLWFSSLKRCFFFSGENLITHWKNQAVTGKKSMPLALIEKE GIELSFGIAPRIPYLDAVEQYIQTH >gi|307679015|gb|GL456782.1| GENE 92 92779 - 95115 2546 778 aa, chain + ## HITS:1 COG:SP0369 KEGG:ns NR:ns ## COG: SP0369 COG0744 # Protein_GI_number: 15900292 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Streptococcus pneumoniae TIGR4 # 41 697 17 662 719 624 53.0 1e-178 MPTANSGSRAARHASNTSSKSSYKKKTQPPKKKKRLVLKIFLGLLIAGMVAFLAGVGLFW FYARQAPKLEDDKLNATVSSKLYDINNEIFEDLGAEKRELIQPNDVPQLLKDAIVSVEDR RFYKHIGVDPIRIIGSALSNVKNGGLQGGSTLTQQLIKLSYFSTKESDQTLKRKAQEAWM AVRLEREKSKEEILTYYINKVYMANGFYGMETAAENYYGKHLSELDLPQTALLAGMPQAP NSYDPYTKPDTAKERRDVVLYTMYDNKKISKAEYEKAKATPIDEGLVPLKASDDNRKVVD NYVKEVINEVKAKTGKNVYTDGLDIYTNLDMNAQKQLYDIVNSDQYVAFPDDKMQVASTV IDVASGQVRAQIGGRHIPDDVQLGNNLAVNTQRDVGSTVKPIMDYGPAIENLNYSTGRLM VDKPTKYPGTDIDVFNSDLTYQGVITMRRAIMGSRNTTAVQTFDEVGKENIMPFIKGLGI DYKNLEASNAISSNTSDVDGDKYGISSLKLAAAYAAFANNGIYNKPYYVNKVVFNDGTSV DYQPDGKRAMKDSTAYMMTDMLKDVLNGGTGFNGAIPGLIQAAKTGTSNYTDEDLARMGT TEKGIAPDSTFVGYTTHYAVSVWTGYNDRNTPIYQEYYGIASDVYREIMSYLSQNVSNDD WVQPDSVVRVGNELYVKDAYEVPNVQVLPSTTSSAPQPESSSTVESSSTKEAESSSSSSS ESAPSSSEAPPSTEQPASSSSAEQPATSEQPPEPSSSSSQEPPQPPESSSKPDENKAA >gi|307679015|gb|GL456782.1| GENE 93 95199 - 96809 2061 536 aa, chain - ## HITS:1 COG:SP0494 KEGG:ns NR:ns ## COG: SP0494 COG0504 # Protein_GI_number: 15900408 # Func_class: F Nucleotide transport and metabolism # Function: CTP synthase (UTP-ammonia lyase) # Organism: Streptococcus pneumoniae TIGR4 # 2 532 3 533 535 878 79.0 0 MTKYIFVTGGVVSSIGKGIVAASLGRLLKNRGLKVTIQKFDPYINVDPGTMSPYQHGEVF VTDDGAETDLDLGHYERFIDINLNKYSNVTTGKIYSEVLRKERKGEYLGATVQVIPHITN EIKEKIMRAAKMTDADVIITEVGGTVGDIESLPFLEALRQMKADMGSDNVMYIHTTLIPY LKAAGEMKTKPTQHSVKELRSLGIQPNILVVRTELPVSQNTKNKLAQFCDVNPEAVIESR DVETLYSIPLALQAQNMDQIVCDHLKLDAPAADMTEWRALEEKVLNLKKKTKIALVGKYV ELPDAYISVVEALKHAGFDFDSDIEIDWVDSQELTAENVAERIGSADGILVPGGFGDRGI EGKIEAIRFARENDVPFLGICLGMQMACVEFGRNVVGLEDAGSAETNPDVTNNIIDLMAD QENIENLGGTLRLGLYPCKLKKGTKTAAAYGNEDVVQERHRHRYEFNNKYRQLFEENGLV FSGVSPDNRLVEIVEIPEKQFFVACQFHPELISRPNRPQRLIKGFVGAALANKESK >gi|307679015|gb|GL456782.1| GENE 94 97117 - 97734 952 205 aa, chain - ## HITS:1 COG:SPy1895 KEGG:ns NR:ns ## COG: SPy1895 COG3343 # Protein_GI_number: 15675708 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, delta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 171 1 170 191 116 55.0 3e-26 MEINVFEGLNKKELSMIEVAHAILEQHADVMDFSDLVNQIQNYLGKSDSEIRDQLAQFYT DLNIDGSFISLGDNRWGLRSWYPIDSIDEEVTHGLEEDEEDAPRRRKRKKVNAFITNPND EDVIDYNDDDPEDAELTNDDEEDILYDDEEDEDEEIKAYNSDLQEIGADSDDDEEDIPQI EEDLTIIDDDDVEDEDDFDDEYSEE >gi|307679015|gb|GL456782.1| GENE 95 97811 - 98248 679 145 aa, chain - ## HITS:1 COG:SA0563 KEGG:ns NR:ns ## COG: SA0563 COG4506 # Protein_GI_number: 15926284 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 9 143 9 137 142 58 33.0 4e-09 MDLSTGVPVSIQLKTIVQQGNEQKDFFFDLEGQLVKMGDTLYIRYKEELLEDTEPTPVTI KIEPDGHVQLIRAGELRMRLRFGYQEKLDTSYRTPYGLLQISTFTHNLRVSLKDQPMSGK ILVDYDLYSQTERIGEYHLELEFTA >gi|307679015|gb|GL456782.1| GENE 96 98544 - 99395 819 283 aa, chain + ## HITS:1 COG:SPy1220 KEGG:ns NR:ns ## COG: SPy1220 COG0095 # Protein_GI_number: 15675184 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Streptococcus pyogenes M1 GAS # 28 240 33 248 283 196 46.0 4e-50 MSTTFPLHTESFMLLDSGCLTNSDYFLPFALTDVLTTFSGMQHQPIIHFWQLDQAMILGM KDTRVPHLKEGITSLQENDYSVVVRNAGGLGVIADSGILNVSLILPNNSEHKLSIDAAYE LMWAWLRQSFPEKEIDAFEITTSYCPGTYDLSIGGQKFAGIAQRRVKDGIAVMIYISVNG NQLARGEVVRDFYLAGLQEQFGENGYPPVDPAVMANLETLIETPLTIDAVKTRLIEALPQ QFEKSIDPNLTEPIITSEWFQTNLTVQLEKMAQRNALIKGEIV >gi|307679015|gb|GL456782.1| GENE 97 99392 - 100762 1427 456 aa, chain + ## HITS:1 COG:SP1290 KEGG:ns NR:ns ## COG: SP1290 COG1078 # Protein_GI_number: 15901150 # Func_class: R General function prediction only # Function: HD superfamily phosphohydrolases # Organism: Streptococcus pneumoniae TIGR4 # 13 449 3 426 434 538 62.0 1e-152 MTIPYKEQRLPIEKVFRDPVHNYIHVQHQVILDLINSAEVQRLRRIKQLGTSSFTFHGAE HSRFSHSLGVYEITRRICEIFQRNYSVERLGENGWNDDERLITLCAALLHDVGHGPYSHT FEHIFDTNHEAITVQIITSPETEVYQILNRVSADFPEKVASVITKQYPNPQVVQMISSQI DADRMDYLLRDAYFTGTEYGTFDLTRILRVIRPYKGGIAFAMNGMHAVEDYIVSRYQMYV QVYFHPVSRGMEVILDHLLHRAKELFENPEFDYDLQASLLVPFFKGDFTLQEYLKLDDGV LSTYFTQWMDVPDSILGDLAKRFLMRKPLKSATFTNEKESAATIAYLRELIEKVGFNPKY YTAINSSYDLPYDFYRPNKDRHRTQIELMQKDGSLVELATVSPLVAALAGQSQGDERFYF PKEMLDQGNKKHYDLFDETYREFSSYIHNGALVLKK >gi|307679015|gb|GL456782.1| GENE 98 100781 - 101593 1180 270 aa, chain + ## HITS:1 COG:SP1291 KEGG:ns NR:ns ## COG: SP1291 COG0561 # Protein_GI_number: 15901151 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Streptococcus pneumoniae TIGR4 # 1 269 1 268 268 277 53.0 1e-74 MSIKLVAIDIDGTLLNSQHKITPRVKEALQKANEQGVRIVLCTGRPLPGVKEQLDELALY GENDFVITYNGSLVQATKDNAIISRYTLSYEDFLEIEMYSRKVGAHLHTIDDSAIYTANR NIGKYTIHEASLVNMPLKYRTVDEMTPEMNIIKMMMIDEPEVLDPAIAKLPLHFTEKYTT VKSTPFYYEIMNKNASKGNALAKLADHLGLNKDEVMAIGDNENDLSMIDYAGIGVAMGNA TENVKTIADVHTTSNDEDGVAQIIEKMVLI >gi|307679015|gb|GL456782.1| GENE 99 101657 - 102103 437 148 aa, chain - ## HITS:1 COG:L99869 KEGG:ns NR:ns ## COG: L99869 COG0494 # Protein_GI_number: 15674214 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Lactococcus lactis # 4 144 5 144 146 160 56.0 7e-40 MKTPTFGKREETLTYQTRYAAYIIVSKPENNTMVLVQAPNGAYFLPGGEIEGTETKEEAI HREVLEELGISVEIGCYLGEADEYFYSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLH WVAPEEAVRLLKRGSHRWAVEKWLAAAS >gi|307679015|gb|GL456782.1| GENE 100 102246 - 102626 460 126 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148984704|ref|ZP_01817972.1| 50S ribosomal protein L20 [Streptococcus pneumoniae SP3-BS71] # 1 126 1 126 126 181 65 1e-44 LTMKMAHTCVRVKDLEASLDFYQKAFNFEESRRRDFPENKFTLVYLTLPGDDYELELTYN YDHEAYDLGNGYGHIAISTDDLEGLHEKHQAAGLTVTDLKGLPGTAPSYYFVVDPDGYKI EVIRER >gi|307679015|gb|GL456782.1| GENE 101 102768 - 103490 772 240 aa, chain + ## HITS:1 COG:SP1089 KEGG:ns NR:ns ## COG: SP1089 COG2071 # Protein_GI_number: 15900957 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferases # Organism: Streptococcus pneumoniae TIGR4 # 1 240 1 229 229 210 46.0 2e-54 MTKKIIGIAGNQLLQAAEVFHGNQVTYTPQGFVSAVQAAGGVPLVLPIGPKELAATYIQQ IDKLLLAGGQDVAPEFYGQEPHIKLEETNRDRDEFELALIEEALKQNKPIFAVCRGMQLV NVALGGTLYQDLSMYPQWSVKHGQQPTQPIFATHRIDVEPDSQLSNIYGTTGQVNSYHHQ ALHTLGKDLRVTAWSSDGLAEAVESTNEQQPLLAVQWHPELMYARDAKSQALFNYFVQKL >gi|307679015|gb|GL456782.1| GENE 102 103541 - 104365 1076 274 aa, chain - ## HITS:1 COG:lin0819 KEGG:ns NR:ns ## COG: lin0819 COG0656 # Protein_GI_number: 16799893 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Listeria innocua # 1 274 1 274 274 370 63.0 1e-102 MTLDKTKKLANGNEMPRLGLGVWRVEDGLEATNSVKWALEAGYRLIDTAAVYKNEVGVGE GIRQSGIPREEIFVTTKLWNEDQGYENAIKAFDKSLEKLGLDYVDLYLIHWPVAGKYKES WKALEEIYASGRAKAIGVSNFHQHHLEDLLTEANVVPMVDQIELHPTLTQEPLRKYLAEN KIAVEAWSPLGQGNLLSEPVLVKIGEKYGKSAAQVIIRWHLQNDIIVIPKSVHEKRIQEN FAVFDFELTPEEITAINQLNKDHRFGADPDNFDF >gi|307679015|gb|GL456782.1| GENE 103 104442 - 104804 88 120 aa, chain - ## HITS:1 COG:no KEGG:EF1137 NR:ns ## KEGG: EF1137 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 30 120 1 91 91 160 98.0 1e-38 MKVSIEWAKNDLLSKLPVTIFIDERCATRLTADKRRTFIFHNPVALRLGSRFFSSQIIEI AESCTLKVSFNWSCVYLFCIWLLAVKLWIGSVSGRTIVVVALIGVLTYWRRYLLKIKKMT >gi|307679015|gb|GL456782.1| GENE 104 104974 - 105894 1143 306 aa, chain + ## HITS:1 COG:SPy1897 KEGG:ns NR:ns ## COG: SPy1897 COG0668 # Protein_GI_number: 15675710 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Streptococcus pyogenes M1 GAS # 45 299 19 270 281 198 42.0 9e-51 MLILGLASTETVDSSAPDLAEATVKKVSALQRFWNNINWDAIVATLIEKSLSILFLIFLF FIIQRIGKYLIDRTYANYSKKQHFSESRLKTLHTLIINAFQYTLFFFFIYSLLTIVGVPV GSLLAGAGIAGVAIGLGAQGFMNDLITGFFIILEQQMDVGDYIRLLALNIEGTVTSVGLR TTQIKAVDGTVHFIPNRNITTISNLSRANMQVLIDVRINPEEGYEKICEVITEVNETLKE KYIESIQTGPDIFGMVDLGNGNFAVRTTMYVLNGKQFAVKEEFLAQYIKALTEAGFTIPN TPIIAK >gi|307679015|gb|GL456782.1| GENE 105 105939 - 107066 1246 375 aa, chain - ## HITS:1 COG:SP2096 KEGG:ns NR:ns ## COG: SP2096 COG1473 # Protein_GI_number: 15901911 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Streptococcus pneumoniae TIGR4 # 5 371 3 371 376 454 58.0 1e-127 MEQEELIAIRRQLHQIPEIGLEEKETQAFLLNEIDKMKQPYLQVRTWQTGILVFIEGKNP QKTIGWRADIDGLPIQEEVVSAFQSKRPGFMHACGHDFHMTIGLGVLKELSQQQPDNNFL FLFQPAEENEAGGMLMYEDHAFGEWLPDEFYALHVNPDLPVGTISTRVGTLFAATCEVNI TLKGKGGHAAFPHQANDMVLAATNLIQQAQTIVSRNVDPVVGAVVTFGTFHAGTACNVIA EEATLSGTIRTLTAETNEQTQRRIREISEGIAQSFQCEVTVHLDQKGYLPVVNEPACTTN FIEYMSKQATVQFQQAPVAMTGEDFGYLLSKVPGTMFWLGVASPYSLHSAKFEPNEEALL FGVEAVSGFLKSLDN >gi|307679015|gb|GL456782.1| GENE 106 107145 - 107846 964 233 aa, chain - ## HITS:1 COG:BS_ykuQ KEGG:ns NR:ns ## COG: BS_ykuQ COG2171 # Protein_GI_number: 16078482 # Func_class: E Amino acid transport and metabolism # Function: Tetrahydrodipicolinate N-succinyltransferase # Organism: Bacillus subtilis # 1 233 4 236 236 287 69.0 1e-77 MDAYEIIQYIGDAKKQTPVKVTLKGQLKEVTFPETIKVFNNCKTGTLFGDWADVKPFLEA NKEKIEDYVVENDARNSAIPFLDLKDINARIEPGALIREKVEIGDQAVIMMGAILNIGAV VGAGTMIDMGAVLGGRATVGKHCHIGAGTVLAGVIEPPSAAPVVIENEVVIGANAVVLEG VRVGEGAVVAAGAVVVEDVPAHTVVAGVPAKVIKQIDDKTKSKTEILEELRKL >gi|307679015|gb|GL456782.1| GENE 107 107927 - 108415 692 162 aa, chain - ## HITS:1 COG:L110441 KEGG:ns NR:ns ## COG: L110441 COG0517 # Protein_GI_number: 15673261 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Lactococcus lactis # 1 149 1 147 153 108 38.0 5e-24 MIGTAVKELLLEKQETFLVPAENVANVMCLNPLSHAALVLSQVRYSKIPVLDKGDRFVGL IGLTDVVDKMFDLTSVDFEKLNEFTVADVMEVNVPVIGESWDLEEVLHLLVDASFLPVVD DNQRFKGIITRKEILKAVNHMAHELEKHHLVLPKSEEEMKVI >gi|307679015|gb|GL456782.1| GENE 108 108672 - 109382 622 236 aa, chain - ## HITS:1 COG:SPy0179 KEGG:ns NR:ns ## COG: SPy0179 COG0235 # Protein_GI_number: 15674384 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Streptococcus pyogenes M1 GAS # 7 236 5 233 234 296 60.0 2e-80 MNNKAIIQAMKQRVYEANLALPKLGLVKLTWGNVSEINRSLGIIVIKPSGVKYQEMSKEQ MVVTDLNGQLLETNALKPSSDLPTHLYLYQKMPEIGAIAHTHSLNSVTWAQAGRALPPYG TTHADAFYGAVPCTRALSESEIKENYEEETGKVIVETFHEQELDPLAVPGVLVYGHGPFT WGMTPEKAVENSLILDEICSMARLTEIINPAVEPIDHFLLDKHYLRKHGISAYYGQ >gi|307679015|gb|GL456782.1| GENE 109 109372 - 110232 720 286 aa, chain - ## HITS:1 COG:sgbU KEGG:ns NR:ns ## COG: sgbU COG3623 # Protein_GI_number: 16131453 # Func_class: G Carbohydrate transport and metabolism # Function: Putative L-xylulose-5-phosphate 3-epimerase # Organism: Escherichia coli K12 # 3 283 16 295 297 299 53.0 3e-81 MARIGLYEKALPQNLTWAERLTWAKKLGFDFLEMSIDESDERLARLAWTPSQLQELSQLM VKEDFFIHSLCLSGHRRFPLGSLNKETREKGRKILSQAIRLAHQLNIRVIQIAGYDVFYE EKTAETREFFLQGLKKGVEEAAQYGVILAVEIMDDPFMNSIQKFLEIKEQIPSPFLHVYP DLGNLSAWPENNPAVELEKGIAEIAAIHLKDTFAVTDTFEGKFREVTFGEGCVDFTGLLK TLKRLNYSGPFLIEMWNETDLNFQEKIQAAQQYLYPKLAEVGYYEQ >gi|307679015|gb|GL456782.1| GENE 110 110237 - 110875 785 212 aa, chain - ## HITS:1 COG:SP2035 KEGG:ns NR:ns ## COG: SP2035 COG0269 # Protein_GI_number: 15901856 # Func_class: G Carbohydrate transport and metabolism # Function: 3-hexulose-6-phosphate synthase and related proteins # Organism: Streptococcus pneumoniae TIGR4 # 4 211 6 220 221 255 60.0 4e-68 MKRPNLQIALDHNSLEDALADCMKVGEIVDIIEVGTILCLQEGQKAIRCLKRMFPNKTIV ADTKCADAGGTVARNVAQAGADFMTVICCATLPTMAAAQKEVRELQVELYGNWTMQQARQ WRELGINQVIYHQSRDALLAGGSWGEKDLNKVQELIDLGFEVSVTGGLTVETLELFQTMA VATFIAGRGITESKNPEQAAKDFQKKIDQIWK >gi|307679015|gb|GL456782.1| GENE 111 110889 - 111188 423 99 aa, chain - ## HITS:1 COG:no KEGG:EF1128 NR:ns ## KEGG: EF1128 # Name: sgaB # Def: phosphotransferase enzyme II, B compnent SgaB # Organism: E.faecalis # Pathway: Ascorbate and aldarate metabolism [PATH:efa00053]; Phosphotransferase system (PTS) [PATH:efa02060] # 1 99 1 99 99 175 100.0 6e-43 MRILVSCANGSGTSLMMMRSVEKAMKELGVPITKIHHCAISEGKSSASQYDVVFTPVNFL QMFQQAEKRGVTVIGIKNVMSAKEIQEKYMASDRYQKSE >gi|307679015|gb|GL456782.1| GENE 112 111203 - 112690 1489 495 aa, chain - ## HITS:1 COG:SP2038 KEGG:ns NR:ns ## COG: SP2038 COG3037 # Protein_GI_number: 15901859 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 11 473 10 469 485 394 47.0 1e-109 MGEFLLNSWTYFATNVLTQPAYLIGFIVLLGYLLLRRPFYECLAGFLKATVGYFILSVGS GGLVNNFRPILVGLKERFNLQAMVTDPYFGQNAVDAGLMKTFGRTFGDVMILLLIAFIMN ILLVRFQKYTKLRAVFTTGNVQIQQAATAFWILLFCFPNLGRIEVLIFMGLILGCYWAVA SNLTVGITQELTEGAGFAVAHQQMFGIFIFAKLAEWLKKRDQKKHRSEKADKKLEDIELP GFLSIFNENMVATSILMLFFFGIILLVLGQDYLIQAKFMQEGQSFFFYIMTTSLNFAVYL AILQLGVRTFVDELTQSFQGISNTILPGAVPGIDVAATFGFGSPNAVTIGFLFGALGQFL MIGLLILLKSPTIVIAGFIPLFFDNAVIAVYANNRGGVKAACLFPFLSGLIQVGGSALFA TWIGLSQYGGYLGMFDWATAWPLFTIIMKVLGYVGVAVVVIGLLIIPQLQYRRNPEGYFM IVNDYEQYAKKFQEN >gi|307679015|gb|GL456782.1| GENE 113 112703 - 113161 497 152 aa, chain - ## HITS:1 COG:lin2929 KEGG:ns NR:ns ## COG: lin2929 COG1762 # Protein_GI_number: 16801988 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Listeria innocua # 21 149 20 146 148 82 37.0 4e-16 MLTYFWEQELIHYPDKEPVSWQEAIQESCLILLQKHIIDQSYVDEIIQCVETFGPYIIIA PEVAMPHSSEESAGVFGTAISFTKFKQAVTFAGDQEAKTATLFFTLAAQNPAEHLENIQQ LMDLLMTDGVIADLLETNTPMDFKEVMEKYQL >gi|307679015|gb|GL456782.1| GENE 114 113179 - 114246 1049 355 aa, chain - ## HITS:1 COG:ECs5168 KEGG:ns NR:ns ## COG: ECs5168 COG2220 # Protein_GI_number: 15834422 # Func_class: R General function prediction only # Function: Predicted Zn-dependent hydrolases of the beta-lactamase fold # Organism: Escherichia coli O157:H7 # 1 355 3 356 356 483 62.0 1e-136 MSKSIHEITKESWLKATFPEWGTYLNEEINQTNVLQGTVALWWLGCTGIWLKTHENTNIL CDLWCGTGKQTHGNGLMKNGHQMMRMSGCQKMQPNLRTQPFVIDPFEIKEVDALVVTHIH SDHLDIHTAAAVHQNCPKALFIGPKEVVKTWQRWGVPSEKTRVIEPGQEIKVNDVNVLAL EAFDRTALITSDDPENTFKGKMPQDMNELAVNYLFETSGGTVYHAGDSHYSNLFAKHGNQ YAIDVCLGAYGENPRGITDKITSVDMLRMAESLNAKVVIPVHYDIWSNFMADPKEIMEIW KFKKNRLHYQFKPYIWQVGGKFVYPDDKDNLEFNFDRGFDDVFVKENDTPFPSFL >gi|307679015|gb|GL456782.1| GENE 115 114440 - 115204 630 254 aa, chain + ## HITS:1 COG:BS_glcR KEGG:ns NR:ns ## COG: BS_glcR COG1349 # Protein_GI_number: 16080683 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Bacillus subtilis # 9 251 4 249 258 104 32.0 2e-22 MKSSLETIEKRQQNILALLQKNKQMTTYKLADVLNVSLSTIRRDLNVLETKNDIIRKYGY CIYNDQNQKDFDQSGPELLKQAIARVACSYLSDYDTVFINSSSTALNILHYLKADHLTIV TNNLKIATKPHVSQYNYILTGGELRFPKEVLVGDIAINTITATHADVCVIGCSGVSLEHG VTTKIFNEAKINELMIKQTTKVKILVADHRKIGLTSKFKIADITAFDCLITDKHCSSTLI TELRKTGLKVIQVD >gi|307679015|gb|GL456782.1| GENE 116 115298 - 115810 595 170 aa, chain - ## HITS:1 COG:lin1203 KEGG:ns NR:ns ## COG: lin1203 COG0622 # Protein_GI_number: 16800272 # Func_class: R General function prediction only # Function: Predicted phosphoesterase # Organism: Listeria innocua # 1 168 1 168 174 159 47.0 3e-39 MKILVVSDNHGDRDCLVDLVNHYEGQVDALFHCGDSELEPTDELWQKLIVVQGNCDFYDE FPKTVTKKVGDQVIYMTHGHLANVRMGLTTLALQAEEAGATIALFGHTHVLGAERHNNIL FVNPGSIRLPRGPVQEKTYAIIESTPEQYLVQYYNKEHQPLERLKATFTK >gi|307679015|gb|GL456782.1| GENE 117 115823 - 117178 478 451 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|165937309|ref|ZP_02225873.1| non-canonical purine NTP pyrophosphatase RdgB [Yersinia pestis biovar Orientalis str. IP275] # 231 438 5 213 223 188 49 1e-46 MIRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWV AAEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVI QADGGTRTASITGAFVALRLAVNHLLMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDYA EDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEALYA LASEEVPSQDSEEKVIVIATRNPGKAKEFSSIFGEKGYTVKTLLDYPNLPDVEETGRTFE ENARLKAETIAEILQKPVLADDSGLIVDALGGMPGIYSARFAGEPTNDASNNAKLLHELT GVPKEKRQARFHCTLVFAEPKKESLVVEAEWPGEVGTIPRGEGGFGYDSLFYVPELGKTA AELSGEEKNKVSHRGQAVAKLKEQWEEWLKK >gi|307679015|gb|GL456782.1| GENE 118 117171 - 117998 779 275 aa, chain - ## HITS:1 COG:lin1200 KEGG:ns NR:ns ## COG: lin1200 COG0796 # Protein_GI_number: 16800269 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glutamate racemase # Organism: Listeria innocua # 6 270 2 265 266 325 58.0 4e-89 MRMSNQEAIGLIDSGVGGLTVLKEALKQLPNERLIYLGDTARCPYGPRPAEQVVQFTWEM ADFLLKKRIKMLVIACNTATAVALEEIKAALPIPVVGVILPGARAAVKVTKNNKIGVIGT LGTIKSASYEIAIKSKAPAIEVTSLACPKFVPIVESNQYRSSVAKKIVAETLQALQLKGL DTLILGCTHYPLLRPVIQNVMGSHVTLIDSGAETVGEVSMLLDYFDIAHTPEAPTQPHEF YTTGSAKMFEEIASSWLGIENLKAQQIHLGGNEND >gi|307679015|gb|GL456782.1| GENE 119 118263 - 118994 637 243 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 239 1 242 245 249 51 4e-65 MISLEHVNKYFGEHHVLKDITLNVEQGEKIVIIGPSGSGKSTLIRCMNQLEKVNDGSVVI DNIDITKPKAPIQKVRQKVAMVFQNFNLYAHKTIIDNLTLAPIKVMGVSKDEAIRTGMEY LERVGLADKASAYPSQLSGGQQQRVAIARALNMHPEIILFDEPTSALDPEMIQEVLDVMV DLSKQNITMVCVTHEMGFARQVADRVIFMDQGQIIEQGTPEHFFTSTENPRAKEFLSKII HNG >gi|307679015|gb|GL456782.1| GENE 120 119029 - 119856 1149 275 aa, chain + ## HITS:1 COG:SP0609 KEGG:ns NR:ns ## COG: SP0609 COG0834 # Protein_GI_number: 15900517 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Streptococcus pneumoniae TIGR4 # 42 274 18 247 254 241 54.0 1e-63 MKKQNKWLAGLSLLVLAGIIVGCGSGNNDSTSKSASSNKTVTVEQLKKAGKIKVGVKEDI PNFGYMNPDTNKNEGMEPDIARLIAKEITGSEENVEFVGVTAKTRGPLLDNGELDMVIAT FTITDERKKTYNFTTPYYTDEIGFLVRKEDNFSSMKDLDGKTIGVAQSATTKENLEKKAQ EEGIKFTYQELGSYPELKTALTSKRIDAFSVDKSILSGYVDGKTEILKDGFSPQEYGITT KKANTELNDYLNGLIEKWEKDGTLEKIYQDWGLKN >gi|307679015|gb|GL456782.1| GENE 121 119902 - 120615 761 237 aa, chain + ## HITS:1 COG:SP0608 KEGG:ns NR:ns ## COG: SP0608 COG0765 # Protein_GI_number: 15900516 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 17 236 4 224 225 254 60.0 1e-67 MFLLANISWLEEGPFALYRWEALFQDWRIFGQAFLYTILLSLGAILVAFALGIFFGSLSA TKSKLLHAISRVYVEFFQNTPLLIQFIVVYYGFPLLSPLLSFSITTIAILCVGLYHGAYI SEVVRSGIGAVPRGQFEAAYSQGLTYGQTMRYVILPQAWRIMLPPLTNQVVNLIKNTSTV AIISGADVMFAANSWSSVNLNYIPAFALAGFLYFILCFPLANLARKMEEKNKKAYSR >gi|307679015|gb|GL456782.1| GENE 122 120627 - 121292 694 221 aa, chain + ## HITS:1 COG:SP0607 KEGG:ns NR:ns ## COG: SP0607 COG0765 # Protein_GI_number: 15900515 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 5 220 2 217 219 249 64.0 2e-66 MPFSEEMRQLLTANNFQFLFNGLKLTLYISFVSIILSTIFGTILAVLRNQTHGPLKLLAS IYVEVVRNIPNLLWIYVIFLIFKIKSTPAGIVSFTVFTTAALAEIIRGGLNGVDKGQIEA ARSQGFSNWQILYHIVLPQAIRNVLPAIVSQFVTVIKDTSFLYSVIALQELFGKSYILMG RYAQTGQVFTIYGIVALIYFIINFSISQFSRWLSRNWAKSY >gi|307679015|gb|GL456782.1| GENE 123 121543 - 123966 3313 807 aa, chain - ## HITS:1 COG:SP0581_2 KEGG:ns NR:ns ## COG: SP0581_2 COG0072 # Protein_GI_number: 15900491 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase beta subunit # Organism: Streptococcus pneumoniae TIGR4 # 149 807 1 655 655 679 55.0 0 MLVSYKWLNEYVNLSNVTPQELADKMSVTGIEVEGVAVPEEGLKKIVVGEVKECVPHPNS DHLSICQVDIGEEELSQIVCGAPNVKAGIKVIVALPGSRIAGNQKIKKGKMRGEVSNGMI CSLEELGYSDNVVPKAYAEGIYYLPQEAVNGTPVFPYLDMDDAIIELSITPNRADALSMR GVAYEVGAIYRQTPQFNDPELKEDASDNVENYVTVTVEDSQDAPAYQIRVIKDVTIAESP QWLQNRLMNEGIRPINNVVDVTNYILLLFGQPLHAFDYQKLDSKEILVRRATAAEELITL DGETRQLTEENIVITNGKTPVGLAGVMGGANSEISQETTTVALEAALFNPLSIRKTSKQF NLRSESSSRFEKGINQATVGLACDVAAAMIAELADGTVVSGTAVGSEVAVKEAQVAVTLE RINQYLGTALDEATVNEIFEALGFAYEVNQGAYEITIPPRRWDIAIEADIIEEVARIYGY DHLPSTLPSGETVAGSLTKAQHVTRQLKSLLEGHGTSEAISYALTTEEKSRQFMMKESQT TRLQWPMSEERSVLRMNLISGLLDDVAYNVARKNNNIAFYEVGRVFYQTEDPTKNLPTEE NHLALALTGNTMVKDWQTKATAVDFYTVKGLVESIVAVLGLTEKISYQATTAIPEMHPGR TAWIYLEDEVVGFVGQVHPTTAKAYDIPETYVAELNLQQLVATEAGGVTYEAVSKFPAVS RDIALLVDETVTNQELVKTISDNAGKYLKEIHLFDVYQGEKLGAGKKSMAYSLTFVNAEA TLVDEEINRSMEKVEKALIEKHQVEVR >gi|307679015|gb|GL456782.1| GENE 124 123974 - 125020 1402 348 aa, chain - ## HITS:1 COG:L0354 KEGG:ns NR:ns ## COG: L0354 COG0016 # Protein_GI_number: 15673911 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase alpha subunit # Organism: Lactococcus lactis # 1 344 1 344 346 539 72.0 1e-153 MTLQAQLEALRDNTLKEIAQVATLKELNQIRVETLGKKGPITEVLRGMKNLSPEERPVVG GFANEIRDLLTEAIEARKVVLENEALNAALKEESLDVTLPGKQMPQGTRHILTQVMEEIE DIFLGMGYQVVEGYEVESDHYNFERMNLPKDHPARDMQDTFYISDEMLIRTHTSPVQART MEKHDFSKGALRMISPGKVFRRDTDDATHSHQFHQIEGLVVDKNVTMGDLKGTLEVMMKK MFGEDRKIRLRPSYFPFTEPSVEVDVSCFKCGGAGCNVCKHTGWIEILGAGMVHPDVLQM SGIDPTEYSGFAFGLGPDRVAMLRYGVNDIRNFYQNDLRFLNQFKVKE >gi|307679015|gb|GL456782.1| GENE 125 125339 - 125683 414 114 aa, chain - ## HITS:1 COG:lin1183 KEGG:ns NR:ns ## COG: lin1183 COG1733 # Protein_GI_number: 16800252 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 6 109 2 104 107 101 52.0 4e-22 MEKVKTESFVLCPKFEKSFSILGKKWNGLIIDVLLERGPQRFGELKEKIPMLSDRVLVER LKELEAEGIITKAVRCGEGNRLEYFLTEKGEDLQLAMEQIQHWAEKWVKDEECS >gi|307679015|gb|GL456782.1| GENE 126 125753 - 129547 3774 1264 aa, chain - ## HITS:1 COG:BS_addA KEGG:ns NR:ns ## COG: BS_addA COG1074 # Protein_GI_number: 16078127 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Bacillus subtilis # 8 1254 5 1232 1232 768 39.0 0 MSKTIPLRPANEQFTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRL LIVTYTEAAAREMKERIQVALQKAMNEEQDPERRRHFSRQIALLPTANISTLHAFCLTVI RRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEAFYQLTANFSNDRSDDG LTNLIFSFYEFAKANPDPEAWINGLTQAYEVGDQLGESTLFQTYLKPLAVETLQRTLQRY EEMVTLTEGEEKLQKIWYLAQNEKEQTKQFLQFLERNDLESAYNLTELLSFDRYPTVRAE ELKPTAEQAKQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAY GAEKRLKNLVDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQE SILYWLRRPLSTEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQYGQGKEGKRIILAENFR SRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKATESV EFPELQSPELLIEDKTEGELYVTALKIRELIDQNFLIYDKKLKTDRPITYQDIVLLTPTK KNNLTILDVFKSLEIPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPLAAVLRSPIVG LKENELVLIRLANKETSYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESLEKWREQARRNQ ISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGLFQFVRFIEKMQ EKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLNERYIFEENLGV GIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLFLVGSYKDQAAM WKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVVVSNVPQVKKHP ANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLSFNYPFEVATRT TSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSKPKFLDTVQAPS AAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNLEQIVAFFDTAL GKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIELDNQCILYDYK TDHVKSTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGGVIIDMQTGNVV DFIK >gi|307679015|gb|GL456782.1| GENE 127 129540 - 133130 3511 1196 aa, chain - ## HITS:1 COG:lin2369 KEGG:ns NR:ns ## COG: lin2369 COG3857 # Protein_GI_number: 16801432 # Func_class: L Replication, recombination and repair # Function: ATP-dependent nuclease, subunit B # Organism: Listeria innocua # 1 1194 1 1157 1157 568 30.0 1e-161 MSVQFIRGTAVADLEAPLIQATKQWLEEDAQHEVFYLVPNHIKFEQEIQVLQKLRQLQTT TSDSITSTRLQVFSFYRLAWYYLQHTPFYSADVLSDAGAAMIFRKILVEAEEELQIFRGE INKPGFIQQLFQLYQEMREGNIEIAELYPFLEKQTENPKGQDLQLKFQDLTLIFTRFQLQ MSQYGYESAEIIQHLSEYLQTVDLSNVQFVISGYQQFTARELKLIEVLMAQAGSVKVALL LDKQYPHDLPDPRSLFYEAGQTYHQLYQLARQKQIPILSDYVEKKEVLITNPDLQGLNDY WIQSQEHLPPLSAADWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRD LDCYENLLEPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTEL FMPMNQLATSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEA EEQEDVATMEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMW RLQAIEAGQLETARNHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKV PTAIDQVQVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQY LRGTTGRKIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFE KNETTIFDDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPL AKQVFESLTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDV FGLSPAATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTT SSRMNYIRYQLSQTIKKVSWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQG KIHVRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQ LVGQEAKPAGSLYLHVHNPTLSYEGKDDIEQQMLKKYQFDGLLMKDPDLLDHLDTSLQAK QSSLLFPIEESAKEQIKPGRRQEDKFVTEPELGALLSHNRNKFIEAGNQIIGGEVQLNPA YQGKERIACRYCPFRSVCDFDVMLKENNYHRIENLSKEEIMARLLNKDEEGATEDE >gi|307679015|gb|GL456782.1| GENE 128 133241 - 133789 715 182 aa, chain - ## HITS:1 COG:lin1308 KEGG:ns NR:ns ## COG: lin1308 COG0681 # Protein_GI_number: 16800376 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Listeria innocua # 23 163 26 179 188 146 53.0 2e-35 MSLKSKELIKTVVFFACLALGLFLLRQFVFTPVVVRGHSMDPTLADGERVITLKNTEINR FDIITFPAPDEPDKNYIKRVIGLPGDTIAYKDDTLYINGKEVDEPYLDEFKKALTDGQPL TGDFSLKEKVPADSYFVLGDNRRNSKDGRVIGFIHKKDILGEVKFVMWPFSRFGPIPEVS KQ >gi|307679015|gb|GL456782.1| GENE 129 134009 - 134728 997 239 aa, chain - ## HITS:1 COG:L176579 KEGG:ns NR:ns ## COG: L176579 COG1556 # Protein_GI_number: 15673717 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 6 238 5 226 227 211 49.0 7e-55 MTNEAIQNREPFLQNLREKLDVEKQPVSAHPFEPVNHLPEEQLADKTPAELLTIVKERVE TIHTNLVETTQENLLTTIQQIVAEFGGGNLLLPTDARFEAYGLADLAKSLEAVSVKQWQP GSEQREANIQTAAQANIAIAFAEFLLAESGTIVVESNAGQGRALHFLPKHYISIIPFSKL VPRSTQPAAFYTEKIEKGEKIGSAIHFISGPSNSGDIEMQLVVGLHGPLEVCYVVVMDR >gi|307679015|gb|GL456782.1| GENE 130 134721 - 136193 1361 490 aa, chain - ## HITS:1 COG:L175101 KEGG:ns NR:ns ## COG: L175101 COG1139 # Protein_GI_number: 15673716 # Func_class: C Energy production and conversion # Function: Uncharacterized conserved protein containing a ferredoxin-like domain # Organism: Lactococcus lactis # 1 487 1 490 490 773 72.0 0 MGLSTSNKPLSERIEESKKDVFMQKAVAKAQDAQWEKREGAREALGNWPQWRELGEQIRQ HTIQYLPDYLEEFSDNVAKRGGKVFFAQTAEEANEYVKQVVLEKKAKKIVKSKSMVTTEV DIDPMLLGLDDVSVMETDLAEFILQMDDWDEPSHIVFPSIHKNREQIRQVFAKKLGYQGD NDPVNLARCAREVMRKFFLEAEIGITGCNFAIADSGLINLNTNEGNADLTISIPKTQIVL MGMERIVPTMREAEVLDNLLARSAVGQNLTTYVTFAGQKNADESDGPEEFHVVILDNGRS KALGTAFQPVLQCIRCGSCLNVCPVYRHIGGHGYGSIYPGPIGAVLSPILGGYKQFGELP YASSLCGACTETCPVKIPLHELLIEHRKVMTDDLKMKHGFEDFQMRMVGKATGSPAMFKA AMKVDHAAAGILSKQKEITVENMYNHGGYLDKGPGLVKGWTDVRDLPRPPKSSENFRSWF KKHQEGEKND >gi|307679015|gb|GL456782.1| GENE 131 136206 - 136967 823 253 aa, chain - ## HITS:1 COG:L174321 KEGG:ns NR:ns ## COG: L174321 COG0247 # Protein_GI_number: 15673715 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Lactococcus lactis # 1 245 1 246 256 364 72.0 1e-101 MKVSIFSTCVVDLLFPNVGQAMVEVLERYGCETVLPTSQTCCGQPTYNSGYVTESTTTLK NQIDSFDGADYVVGPAGSCVGMMKEYHKFLADDPIYGPKAQRLAERTYEFSQFLYRVLGV KDVGATLHGKATYHRSCHMTRILNERESPFVLLDHVKGLEMIPLGHLENCCGFGGTFSVK MPAISEQMVTEKMNDVIDTGAEILISADMGCLMNIGGKFNRDGKKIKIMHIAEVLNHEVD ESRMDQPQIISVG >gi|307679015|gb|GL456782.1| GENE 132 137319 - 137624 244 101 aa, chain + ## HITS:1 COG:no KEGG:EF1105 NR:ns ## KEGG: EF1105 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 101 1 101 101 120 99.0 1e-26 MFISFNMFILLIVATILMIFLIIYLTVTGNDKNNKKKQKKETKRTTPTLNKKTTVPPSQK PNVVTDVAKKSEPEKQAVQRTQQPTTREDETSQFTRSQRHK >gi|307679015|gb|GL456782.1| GENE 133 137805 - 137990 248 61 aa, chain + ## HITS:1 COG:no KEGG:EF1104 NR:ns ## KEGG: EF1104 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 61 1 61 61 73 100.0 2e-12 MSAKRFIQLFICYAISMIVAILLTDLFNFSSPIAYLVVASIIGYVVITVPLTIMTLLKNK N >gi|307679015|gb|GL456782.1| GENE 134 138161 - 139513 1421 450 aa, chain + ## HITS:1 COG:L18622 KEGG:ns NR:ns ## COG: L18622 COG1113 # Protein_GI_number: 15672791 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Lactococcus lactis # 3 443 2 441 446 541 71.0 1e-154 MSETQQTTLKKQLSSRHITMLALGGAIGAGLFKGSGEAIGIAGPSVLIAFLIGGAVLFIV MSGLGKLVLDGGDTHHGLSGLVRPFLGAHSADFIDWVYYSMWTINIIAEAVAAASFLQLW FPNIPAWFFVFILAILTTLINLYSVRLFAETEYWLAFAKISVIILLIIFGVYLVGQQMLG SGVFPTLQSITDHGGFAPHGMKGIVNSLLVVIYSYGGSELIAITVSEADDPKKAIPKAIR GVMGRIISFYIIPLFLLLIIFPWNTLAGTTVSPFVMVFEKMNIPFAADIVNFVIILALFS SINSGVYASSRLLYFRLKDKKGPMSKLAVLNKHQVPQRSVFFCASVLYLGVILSYFVGDE LFGYLAGSLSYTVLLIWILISAAAFVLSLKRGSLFEKSINLLALIILGLIFIGILFTNSL GVTLLTGLLYFVIFFSYRKKNDSFLLSDES >gi|307679015|gb|GL456782.1| GENE 135 139625 - 140026 509 133 aa, chain + ## HITS:1 COG:no KEGG:EF1102 NR:ns ## KEGG: EF1102 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 133 1 133 133 241 100.0 6e-63 MKKIGAILFIGLFIVGGYTGYRYYADTYKGEKAYAQVPLEIPERKQTVDDNQKSIDGQYS LHYRLTFVKSNGKTQVMDYERTDKNPQPLEPNAYIEATISKKRIIQSPVKIDKKEIPEKA FAQLNNRKTTSDN >gi|307679015|gb|GL456782.1| GENE 136 140023 - 140757 601 244 aa, chain - ## HITS:1 COG:L103246 KEGG:ns NR:ns ## COG: L103246 COG0500 # Protein_GI_number: 15673455 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Lactococcus lactis # 1 233 1 242 247 148 39.0 1e-35 MNNNEQELAEFWDEFAEEYEEVQQESPFPIARELRDFLVQEGLFPCQTFLDIAGGTGRYL PFFQEQVTEYTLADISQRMLEIAEAKAQSNVVFLHQSQERLIETGKKFQVVFSAMNPALD TPEKVKALCQLSEEWCLIFRLVEEQDSLFSPFEQESNPQLNWMAKYKAFLKKEQRPFFTK KFFFEASEAISKDFFRNYFEEQWSVPILEQRIQEIFGSHEIKQNQRTIIYELIVIPCKKT TSDD >gi|307679015|gb|GL456782.1| GENE 137 140827 - 142422 1518 531 aa, chain - ## HITS:1 COG:jhp0343 KEGG:ns NR:ns ## COG: jhp0343 COG1132 # Protein_GI_number: 15611411 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Helicobacter pylori J99 # 2 529 9 543 551 156 25.0 1e-37 MTKKIWSHFQKSFTWYILIGVIVSLCSALAIYFFQQLLDHYQKSFQLGLLVAYGTTIILI PLLSYCEQKPKAYLTNGIYFYLKKLSLIKMSKISYEEYLKLGAGALLQKVEVGAAAGRNI HLNFYGRLFRELIPETLFNLFFIALIDKKLLPAILIGYVIVFILTKILLKTLQKMKEKTL ISEEAMNATLIRGMTELVTFRINRKYKKEIENYALMAEENSQNITKMTMIHEFFFGFFAL LVALIKVSIVVLSFTNVVTLSLGGLVAIVMYIDRIYTPIAIFNVLFVQYNLDKVAYQRLE DFYKKEDDPDLAVSGKALPEIQTISLKDVCFSVDSQTIMSQQNRQFSMNKTYGLIGKSGT GKSTLIKLILGLLKPTEGTVYVNQFPLTQFNLEDYYEKVFYLSQDVPIFQGTLKENIVFN QEISDEQVIEAMYRFQLGELYERLPEGLNTIVSEKGMNFSGGEKQRIAFTRLAFTQAEIL ILDEATSALDEKTEEKVLQEVQKFTHNKLTILVTHRPKTLRFVDEIIDLNE >gi|307679015|gb|GL456782.1| GENE 138 142547 - 144289 1659 580 aa, chain - ## HITS:1 COG:no KEGG:EF1099 NR:ns ## KEGG: EF1099 # Name: not_defined # Def: collagen adhesin protein # Organism: E.faecalis # Pathway: not_defined # 1 513 1 524 674 734 89.0 0 MTKSVKFLVLLLVMILPIAGALLIGPISFGAELSKSSIVDKVELDHTTLYQGEMTSIKVS FSDKENQKIKPGDTITLTLPNALVGMTENDGSPRKINLNGLGEVFIYKDHVVATFNEKVE SLHNVNGHFSFGIKTLITNSSQPNVIETDFGTATATQRLTIEGVTNTETGQIERDYPFFY KVGDLAGESNQVRWFLNVNLNKSDVTEDISIADRQGSGQQLNKESFTFDIVNDKETKYIS LAEFEQQGYGKIDFVTDNDFNLRFYRDKARFTSFIVRYTSTITEAGQHQATFENSYDINY QLNNQDATNEKNTSQVKNVFVEGEASGNQNVEMPTEESLDIPLETIEEWEPKIPTSEQAT ETTEENGATETAESSQPEVHVSPTEEENPDESETLGTIAPIIPEKPSVTTEENGATETAE SSQPEVHVSPTEEENPDESETLGTIAPIIPEKPSVTTEENGTTETAESSQSEVHVSPTKE ITITEKKQPSTETTVETNKNVTSKNQPQILNAPLNTLKNEGSPQLAPQLLSEPIQKLNEA NGQRELPKTGTTKTPFMLIAGILASTFAVLGVSYLQIRKN >gi|307679015|gb|GL456782.1| GENE 139 144624 - 144929 300 101 aa, chain + ## HITS:1 COG:no KEGG:EF1098 NR:ns ## KEGG: EF1098 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 101 1 101 101 172 99.0 3e-42 MKNSYFDGDLATYIGTSILATLITVFTLGICAPWGICMMYNWKIKHTVIDGKRLYFDGTA MQLFGHWIKWLLLTIITLGIYGFWLNIRLQQWITKHTHTLS >gi|307679015|gb|GL456782.1| GENE 140 145401 - 145619 56 72 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|257415712|ref|ZP_05592706.1| ## NR: gi|257415712|ref|ZP_05592706.1| predicted protein [Enterococcus faecalis AR01/DG] predicted protein [Enterococcus faecalis ARO1/DG] # 1 72 1 72 72 127 100.0 2e-28 MDAGSTPAVSIFRKVEKNKKELKPYKIKVLALFFYKQEKARYLLLHFLSHYLSKTTSFSF SIGDFGYCIEHG >gi|307679015|gb|GL456782.1| GENE 141 145739 - 146251 543 170 aa, chain - ## HITS:1 COG:no KEGG:EF1097 NR:ns ## KEGG: EF1097 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 170 1 170 170 285 99.0 7e-76 MELQVTKKAKFFCLAMALLMTLGIFISAGTSVYASDQLEDSEVEAVAKKLEEMYANGVTE DNFKNYVKNNFAQQEISSVEEELNVNISDASTVVQARFNWNALGSCVANKIKDEFFAMIS ISAIVKAAQKKAWKELAVTVLRFAKANGLKTNAIIVAGQLALWAVQCGLS >gi|307679015|gb|GL456782.1| GENE 142 146611 - 146814 404 67 aa, chain - ## HITS:1 COG:CAC0976 KEGG:ns NR:ns ## COG: CAC0976 COG2155 # Protein_GI_number: 15894263 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 1 61 1 60 69 57 57.0 5e-09 MKYLDIIALILLIVGGLNWLLVGAFNFDLVATISGGATTPLAKIIYIIVGICAIYSIKFL APLFREP >gi|307679015|gb|GL456782.1| GENE 143 147009 - 147302 190 97 aa, chain + ## HITS:1 COG:no KEGG:EF1095 NR:ns ## KEGG: EF1095 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 97 1 97 97 125 100.0 5e-28 MRAKLFLILRNRVLSRVVFVILFLHVLFTTNDFTVLLLLLLLNYLLTLEDSAKKNRKIQT WQEFKQSIDWPFVAFYSGLALLVISLILLFLWFNYAR >gi|307679015|gb|GL456782.1| GENE 144 147370 - 148224 936 284 aa, chain - ## HITS:1 COG:SP0466 KEGG:ns NR:ns ## COG: SP0466 COG3764 # Protein_GI_number: 15900382 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Streptococcus pneumoniae TIGR4 # 22 284 1 259 279 180 40.0 3e-45 MKSKKKRRIIDGFMILLLIIGIGAFAYPFVSDALNNYLDQQIIAHYQAKASQENAKEMAE LQEKMEKKNQELAKKGSNPGLDPFSETQKTTKKPDKSYFESHTIGVLTIPKINVRLPIFD KTNALLLEKGSSLLEGTSYPTGGANTHAVISGHRGLPQAKLFTDLPELKKGDEFYIEVNG KTLAYQVDQIKTVEPTDTKDLHIESGQDLVTLLTCTPYMINSHRLLVRGHRIPYQPEKAA AGMKKVAQQQNLLLWILLLIACALIISGFIIWYKRRKKTTRKPK >gi|307679015|gb|GL456782.1| GENE 145 148318 - 150201 2486 627 aa, chain - ## HITS:1 COG:no KEGG:EF1093 NR:ns ## KEGG: EF1093 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 627 1 625 625 1107 98.0 0 MKQLKKVWYTVSTLLLILPLFTSVLGTTTAFAEENGESAQLVIHKKKMTDLPDPLIQNSG KEMSEFDKYQGLADVTFSIYNVTSEFYEQRAAGASVDAAKQAVQSLTPGKPVAQGTTDAN GNVTVQLPKKQNGKDAVYTIKEEPKEGVVAATNMVVAFPVYEMIKQADGSYKYGTEELAI VHIYPKNVVANDGSLHVKKVGTAENEGLNGAEFVISKSEGSPGTVKYIQGVKDGLYTWTT DKEQAKRFITGKSYEIGENDFTEAENGTGELTVKNLEVGSYILEEVKAPNNAELIENQTK TPFTIEANNQTPVEKTVKNDTSKVDKTTPNLDGKDVAIGEKIKYQISVNIPLGIADKEGD ANKYVKFNLVDKHDAALTFDNVTSGEYAYALYDGDTMIAPENYQVTEQANGFTVAVNPAY IPTLTPGGTLKFVYFMHLNEKADPTKGFKNEANVDNGHTDDQTPPTVEVVTGGKRFIKVD GDVTATQALAGASFVVRDQNSDTANYLKIDETTKAATWVKTKAEATTFTTTADGLVDITG LKYGTYYLEETVAPDDYVLLTNRIEFVVNEQSYGTTENLVSPEKVPNKHKGTLPSTGGKG IYVYLGSGAVLLLIAGVYFARRRKENA >gi|307679015|gb|GL456782.1| GENE 146 150198 - 151628 1386 476 aa, chain - ## HITS:1 COG:no KEGG:EF1092 NR:ns ## KEGG: EF1092 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 476 1 476 476 859 98.0 0 MKNARWLSICVMLLALFGFSQQALAEASQASVQVTLHKLLFPDGQLPEQQQNTGEEGTLL QNYRGLNNVTYQVYDVTDPFYQLRSEGKTVQEAQRQLAETGAMNRKPIAEDKTQTINGED GVVSFLLASKDSQQRDKAYLFVEAEAPEVVKEKASNLVVILPVQDPQGQSLTHIHLYPKN EENAYDLPPLEKTVLDKQQGFNQGEHINYQLTTQIPANILGYQEFRLSDKADTTLTLLPE SIVVKVAGKTVTTGYTLTTQKHGFTLDFSIKDLQNFANQTMTVSYQMRLEKTAEPDTAIN NEGQLVTDKHTLTKRAAVRTGGKSFVKVDSENAKITLPEAAFIVKNQAGEYLNETANGYR WQKEKALAKKFTSNQAGEFSVKGLKDGQYFLEEISAPKGYLLNQTEIPFTVEKNSYATNG QRTAPLHVINKKVKESGFLPKTNEERSIWLTIAGLLIIGLVVIWLFYQKQKRGERK >gi|307679015|gb|GL456782.1| GENE 147 151632 - 154943 2863 1103 aa, chain - ## HITS:1 COG:BH0361 KEGG:ns NR:ns ## COG: BH0361 COG4932 # Protein_GI_number: 15612924 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Bacillus halodurans # 743 1033 1087 1356 1661 70 29.0 1e-11 MITDENDKTNINIELNLLNQTEQPLQREIQLKNAQFMDTAVIEKDGYSYQVTNGTLYLTL DAQVKKPVQLSLAVEQSSLQTAQPPKLLYENNEYDVSVTSEKITVEDSAKESTEPEKITV PENTKETNKNDSAPEKTEQPTATEEVTNPFAEARMAPATLRANLALPLIAPQYTTDNSGT YPTANWQPTGNQNVLNHQGNKDGSAQWDGQTSWNGDPTNRTNSYIEYGGTGDQADYAIRK YARETTTPGLFDVYLNVRGNVQKEITPLDLVLVVDWSGSMNENNRIGEVQKGVNRFVDTL ADSGITNNINMGYVGYSSDGYNNNAIQMGPFDTVKNPIKNITPSSTRGGTFTQKALRDAG DMLATPNGHKKVIVLLTDGVPTFSYKVSRVQTEADGRFYGTQFTNRQDQPGSTSYISGSY NAPDQNNINKRINSTFIATIGEAMALKQRGIEIHGLGIQLQSDPRANLSKQQVEDKMREM VSADENGDLYYESADYAPDISDYLAKKAVQISGTVVNGKVVDPIAEPFKYEPNTLSMKSV GPVQVQTLPEVSLTGATINSNEIYLGKGQEIQIHYQVRIQTESENFKPDFWYQMNGRTTF QPLATAPEKVDFGVPSGKAPGVKLNVKKIWEEYDQDPTSRPDNVIYEISRKQVTDTANWQ TGYIKLSKPENDTSNSWERKNVTQLSKTADESYQEVLGLPQYNNQGQAFNYQTTRELAVP GYSQKKIDDTTWKNTKQFKPLDLKVIKNSSSGEKNLVGAVFELSGKNVQTTLVDNKDGSY SLPKDVRLQKGERYTLTEVKAPAGHELGKKTTWQIEVSEQGKVSIDGQEVTTTNQVIPLE IENKFSSLPIRIRKYTMQNGKQVNLAEATFALQRKNAQGSYQTVATQKTDTTGLSYFKIS EPGEYRMVEQSGPLGYDTLAGNYEFTVDKYGKIHYAGKNIEENAPEWTLTHQNNLKPFDL TVHKKADNQTPLKGAKFRLTGPDTDIELPKDGKETDTFVFENLKPGKYVLTETFTPEGYQ GLKEPIELIIREDGSVTIDGEKVADVLISGEKNNQITLDVTNQAKVPLPETGGIGRLWFY LIAISTFVIAGVYLFIRRPEGSV >gi|307679015|gb|GL456782.1| GENE 148 155271 - 156692 1260 473 aa, chain + ## HITS:1 COG:no KEGG:EF1090 NR:ns ## KEGG: EF1090 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 473 1 473 473 854 100.0 0 MIRFLEKNYRKMEEIIRVLSISDKWMTKKELAKYIGSSESTFIRYIEEIKQRWGESLTIK TSHKLGYRLENFNVSLYLNVLTDMAKTSTTTQLLHEFIQNPGKTIEYYCDTINISRSSFA RKLKQCNQVLETYSLRVIVDQGYQLTSQTEELPLRIFTTFFFLMYYGHYELPYQLDKQEI KQLMRRNQCQLNIISMDNSYEHDFFIMYFIVDLLREHQGFQQRFQKKTDKKSPIKMEDYL LLSRHFTGLSRETYREVLRYFQRGAFQQYYSEDQEVISQRIRENLKFNAFSQIEQLTEEV VDFAVHLLTCLYLFSQLVPFDTSELTQRATFFTRQIHFTQLHLYARLKAELHFFSALLET NLLNYSSSYIFWLLNTFPEINQSFDSKKILIISDMGLNHSQYIGNYVHDILALHRIRSNT LAITEEQLGDHRLEEFDLIITNQPIIETSVPSILINDAILFSNKRELLDLLNF >gi|307679015|gb|GL456782.1| GENE 149 156878 - 157273 305 131 aa, chain - ## HITS:1 COG:no KEGG:EF1089 NR:ns ## KEGG: EF1089 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 131 1 131 131 225 100.0 4e-58 MFNAYREYWNNITTMNASATRAQYWWPQLINYLVLGIYSAITGVYRYIEVTPNDGTIIKE WNTVTIIFFLLTALIWLANFTVRARRLHDRDHSNWWILFYLLPFIGTLVIFITLILPSKS HTRWPVNQSEI >gi|307679015|gb|GL456782.1| GENE 150 157344 - 158057 567 237 aa, chain - ## HITS:1 COG:SSO1074 KEGG:ns NR:ns ## COG: SSO1074 COG2761 # Protein_GI_number: 15897941 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis # Organism: Sulfolobus solfataricus # 1 206 3 208 225 91 29.0 1e-18 MKIEFFHDVICSFCFPMSDRMHEIQQEFPEIELIHRSFALGWSANDFETMFGSRAAVKEE VLTHWVHANQNDSKHRFNIEGMRKQRFDFPTSKNALLAAKAAGYIGNQDTYWLLFDKLQE GLFVRSLNIEEPEVIEELVKETTIDFALWKEAVASEAVWTAVQEDFALASAYGLQGVPAL IINQKYLINGAVPKQQISQTIQKILAEEKQQQPLVSLTPSSEESASCEFKEGTWTCH >gi|307679015|gb|GL456782.1| GENE 151 157992 - 158135 62 47 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MHAVRHWKTKTTNNIMEKFYFHPYPPVTLFSKQIELNLPFYLLKVNK >gi|307679015|gb|GL456782.1| GENE 152 158197 - 158643 438 148 aa, chain - ## HITS:1 COG:BS_bltD KEGG:ns NR:ns ## COG: BS_bltD COG0454 # Protein_GI_number: 16079713 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 1 141 1 148 152 128 44.0 4e-30 MEIHFEKVTSDNRKAVENLQVFAEQQTFIESMAENLKESDQFPEWESAGIYDGNQLIGYA MYGRWQDGRVWLDRFLIDQRFQGQGYGKAACRLLMLKLIEKYQTNKLYLSVYDTNSSAIR LYQQLGFVFNGELDTNGERVMEWTHQNK >gi|307679015|gb|GL456782.1| GENE 153 159013 - 159255 242 80 aa, chain - ## HITS:1 COG:no KEGG:EF1085 NR:ns ## KEGG: EF1085 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 80 1 80 80 107 100.0 2e-22 MKTKIGKTVILSAFLFTSFLLLSGCTSAGEEMEKTIDRQKEKVDKTVDKQKHKNENSMES YDEKVDRSLDSQEDKIDTTE >gi|307679015|gb|GL456782.1| GENE 154 159326 - 159757 504 143 aa, chain - ## HITS:1 COG:BH3184 KEGG:ns NR:ns ## COG: BH3184 COG0589 # Protein_GI_number: 15615746 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Bacillus halodurans # 3 143 1 141 147 100 37.0 1e-21 MSVYQHILVALDGSDQSEKAFHEAVRIAKEEQSTLYLATIINDAEFTTSPFSFEELYDLE KHKSEEMLTGKAKQASEIGVKTVKKIVELGSPKRYLANTISENYAIDLIVLGATGRGAIQ RTLIGSTTDYVVNHALCNVLVVR >gi|307679015|gb|GL456782.1| GENE 155 159810 - 160115 365 101 aa, chain - ## HITS:1 COG:no KEGG:EF1083 NR:ns ## KEGG: EF1083 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 101 1 101 101 158 99.0 8e-38 MVKDAAYIIEEITTILEGTYFVITKKANKRRMCLHVSDTAKEFLRCRLEYETFLEQQFDY ATMFLETCTEDVSVEIQTGLLEETNYQALTVEKLQQIVTKM >gi|307679015|gb|GL456782.1| GENE 156 160133 - 160315 244 60 aa, chain - ## HITS:1 COG:no KEGG:EF1082 NR:ns ## KEGG: EF1082 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 60 1 60 60 80 96.0 2e-14 MGHHLKGHHGKKTNANGGFLTKLLAGGALLGVGKKLYDNREKIKELLSDDKEKSNDTENK >gi|307679015|gb|GL456782.1| GENE 157 160402 - 160791 507 129 aa, chain - ## HITS:1 COG:no KEGG:EF1081 NR:ns ## KEGG: EF1081 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 129 1 129 129 232 99.0 3e-60 MKRTKKEFTPYNEYHDRPFELKWATAFALGELQEGIEASDEYSKRAFERLPQQTTEEIEE YLEQSLKNNQVLEIQLNTLDDFGRVQPPIVGVFEGMSSMEYAKVGHTHILFEEIRHIKSH EFTKWSSLD >gi|307679015|gb|GL456782.1| GENE 158 160796 - 162112 1229 438 aa, chain - ## HITS:1 COG:pli0067 KEGG:ns NR:ns ## COG: pli0067 COG0389 # Protein_GI_number: 18450349 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Listeria innocua # 4 431 6 426 426 388 47.0 1e-107 MKFDYEKEPSRDILCIDCKSFYASVECAERGLDPLKTMLVVMSNAENAGGLVLSASPMAK KVLGVSNVTRKNQVPAHPDLYVVPPRMNLYMKKNQEINNLYKKFVADEDHSVFSVDESFL DVTASLSYFHCETAYKMARIIQRVVYNHVGIYVTVGIGDNPLLAKLALDNGAKHSPDFIA EWRYDRVPDTVWQLPSLTDFCGIGRRMAKRLNRLGIDSVYELAQANPHLLQETFGVMGLQ LYAHSWGIDRTFLGKKAPHKAEKSFGNSQILPRDYARRDQIELVLKELTEQVAARLRKAH CQTECITVYVGYSKGQIDREGRTGWRKQQTIPATNNTKVLITYVLALFREHYLAGTDVRQ LGLSYGKLVWNESLQLDLFSEPEEQISEMELNYLIDKIRQKFGFQALIHASSLLEGATAI HRSGLVGGHAGGNVGLGG >gi|307679015|gb|GL456782.1| GENE 159 162263 - 163417 1311 384 aa, chain - ## HITS:1 COG:L125116 KEGG:ns NR:ns ## COG: L125116 COG0477 # Protein_GI_number: 15672105 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 1 381 1 381 387 504 81.0 1e-143 MTKKNSMMYLAISNLFLVFLGVGLVIPVIPQLKEEMHFSGTTMGMMISIFAIAQLITSPI AGVLSDKIGRKKMIATGMLVFSISELLFGLAQAKSGFYISRGLGGIAAALLMPSVTAFVA DMTTISERPKAMGLVSAAISGGFIIGPGVGGFIAYLGIRAPFFAAAFLAFIGFILTLTVL KEPEKRILAAVEAKKGSFMDILRNPMFTSLFVIILISSFGLQAFESIYSIMATINFGFTT SEIAIVITVSGILALICQLFFFDAIVQKIGEMGLIQLTFFASAIFIAVIAFTKNNLVVVF STFIVFLAFDLFRPAVTTYLSKHAGDQQGTINGLNSTFTSFGNILGPMAAGALFDINHFF PYYVSAVILLGTGFLSLFLNRNKM >gi|307679015|gb|GL456782.1| GENE 160 163610 - 164050 573 146 aa, chain - ## HITS:1 COG:SP1023 KEGG:ns NR:ns ## COG: SP1023 COG0454 # Protein_GI_number: 15900894 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Streptococcus pneumoniae TIGR4 # 1 142 1 141 143 125 46.0 2e-29 MIRKMKPTDAAALTIINKEQLGYEVPVDVTCKQIEKLLLASDREFLYVYEETKTGKVLGY VHAQLYETIYSQTLLNVLGLAVAKEAEGRGIGKQLMTKLETEAKKYNLSAIRLNSGEQRT AAHQFYEHIGYVSDKKQKRFIKYLDT >gi|307679015|gb|GL456782.1| GENE 161 164074 - 164832 625 252 aa, chain - ## HITS:1 COG:no KEGG:EF1076 NR:ns ## KEGG: EF1076 # Name: not_defined # Def: streptomycin 3''-adenylyltransferase, putative # Organism: E.faecalis # Pathway: not_defined # 1 252 10 261 261 488 98.0 1e-137 MVHQLLAQMENGYMKIIKENLVGIYLHGSYAFGTYCHSVSDLDVLIVVYEKLTIDEKKQL LDYTINILDKWAPKKGIEFHVLQLKDTINLSYPIPFDLHFSPIHRSRYLTNKNKYIEDMM GYDEDLVAHLMITKLYGKVLVGKPIDSVFGWIDQKKYFESIVADVKEAKKEIVQQPMYVI LNLCRVMAFKQENKILSKRAGGEWGLVHFPTNYHSLIQLALKEYRGETVLLEQYNDSELN DFADITLSLLFK >gi|307679015|gb|GL456782.1| GENE 162 164863 - 165369 575 168 aa, chain - ## HITS:1 COG:no KEGG:EF1075 NR:ns ## KEGG: EF1075 # Name: not_defined # Def: acetyltransferase # Organism: E.faecalis # Pathway: not_defined # 1 168 1 168 168 327 98.0 1e-88 MSELVVIREMQEKDILALDTQFVQQGWPSRQEILMNYLEEQLVKQRTVFVAEKKATLLGY VTLLPLAKEGPFKNLYPEIADFNVFLPFQKQGVGRLLLNRAENVAKSYADTVSLGVGLHP GYGAAQRLYIKQGYVPDGSGVWFQNKQLKPNDRCVNDDALVLYLSKKL >gi|307679015|gb|GL456782.1| GENE 163 165442 - 165705 341 87 aa, chain - ## HITS:1 COG:no KEGG:EF1074 NR:ns ## KEGG: EF1074 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 87 1 87 90 172 97.0 6e-42 MDYQERLKNLPPEVMTAFSESFIFLISNDKVQHFPARDLTQAEMIQRVKEKLGEAVTWSL WQGFVIAVNSEKTCVAVLPKYHQLDGF >gi|307679015|gb|GL456782.1| GENE 164 165769 - 166263 417 164 aa, chain - ## HITS:1 COG:no KEGG:EF1073 NR:ns ## KEGG: EF1073 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 164 1 164 164 300 98.0 1e-80 MQPKLIILRGNSGSGKTTIANALHQCLKEQSLLISQDVVRREMLRVKDETGNLSIALLKQ LVAFGYQECQYVIVEGIFQKAIYHSFFQEIIHLFEGNVQVYYFDISFEETLKRHSQRNKN QEFGVVEMKRWWLPEDYLGLAGEQRLSEQLSEKQIIRQILADIQ >gi|307679015|gb|GL456782.1| GENE 165 166345 - 167349 901 334 aa, chain - ## HITS:1 COG:SP1854 KEGG:ns NR:ns ## COG: SP1854 COG1609 # Protein_GI_number: 15901682 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 4 329 1 331 335 247 40.0 2e-65 MRNIVTIKDIAEQVGVSSATVSRVLNYDETLSVSDETKKKIFETAETLNYKKRARKKQAG KKKIRFVQWFSDPEELDDIYYLSIRLGVEKRAEELGFLLVKESLTNLSQKRFDGTIALGK FDEKQVAALAALGAPLLFVDFDAMAFGQNSIVVDFAGSVKTIVQEFLAQGHQKIGMLSGQ EYTKESHVALVDPRFVAFKETLKDLDLYHQEWVVEAAFSVEEGYQAMKDFIEEADTRPTA FFAASDTLAIGAMRALQEAAIRVPEDISIIGFNDISVAKYVSPTLTTVKVHTEWMGELAV ETMKELCLNTPPVPRKIIVGTEFIQRDSTKHSSK >gi|307679015|gb|GL456782.1| GENE 166 167356 - 168849 1586 497 aa, chain - ## HITS:1 COG:SP1829 KEGG:ns NR:ns ## COG: SP1829 COG4468 # Protein_GI_number: 15901658 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose-1-phosphate uridyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 9 494 5 488 491 533 54.0 1e-151 MMKESSKWIAAFVEIIIENGDWTETDRYYLTNRIAKLVGCDFFEQPEAVACEQEPLRVVE HLLNIAQANHQIDDSITEAEQLEAELMDFITPTPTIINQKFMDYYQESPRKATDYFYQLC KTNNYIKTKAIAKNIIFPMDSPYGKLEITINLSKPEKDARKILAEKKMSQKKYPACMLCM ENEGYYGRVNYPARTNHRIIRLNLEDEAWGFQYSPYAYYNEHAIFLDQQHREMKIEKKTF QRLLKITELFPEYFVGSNADLPIVGGSILSHDHYQAGRHTFPMDLAPMEKRFSLKKYPEI TAGILKWPMSVIRLQSDRQEELVEAAELILTKWRNYSDERVSVRAYSKDGTPHHTITPIA RRKGSLFELDLVLRDNNVSEEFPDGIFHPHPEVQHIKKENIGLIEVMGLAILPPRLAQEL REVEKYLLKQPNQIAESHRAWADELSQQTITEANVKEVIQQGIGTIFVQILTDAGVFKRD EEGRRAFERFIQCIEND Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:00:33 2011 Seq name: gi|307679014|gb|GL456783.1| Enterococcus faecalis TX0312 genomic scaffold Scfld80, whole genome shotgun sequence Length of sequence - 515520 bp Number of predicted genes - 498, with homology - 494 Number of transcription units - 239, operones - 120 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 194 - 253 7.0 1 1 Tu 1 . + CDS 437 - 895 595 ## COG2707 Predicted membrane protein + Term 900 - 941 8.2 - Term 887 - 929 9.2 2 2 Op 1 . - CDS 934 - 1275 437 ## EF1247 hypothetical protein - Term 1295 - 1338 1.4 3 2 Op 2 . - CDS 1349 - 1612 464 ## EF1248 hypothetical protein - Prom 1662 - 1721 3.0 - Term 1709 - 1749 1.1 4 3 Tu 1 . - CDS 1768 - 3480 1849 ## COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP - Prom 3509 - 3568 8.0 + Prom 3601 - 3660 5.3 5 4 Op 1 . + CDS 3700 - 4359 668 ## EF1250 hypothetical protein 6 4 Op 2 . + CDS 4423 - 4530 132 ## + Term 4559 - 4594 2.7 + Prom 5340 - 5399 3.1 7 5 Op 1 9/0.000 + CDS 5440 - 6429 1127 ## COG2984 ABC-type uncharacterized transport system, periplasmic component 8 5 Op 2 13/0.000 + CDS 6454 - 7341 1159 ## COG4120 ABC-type uncharacterized transport system, permease component 9 5 Op 3 . + CDS 7338 - 8105 209 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 + Term 8110 - 8144 2.0 - Term 8097 - 8130 1.0 10 6 Op 1 12/0.000 - CDS 8137 - 8598 538 ## COG3610 Uncharacterized conserved protein 11 6 Op 2 . - CDS 8610 - 9386 652 ## COG2966 Uncharacterized conserved protein - Prom 9416 - 9475 6.6 + Prom 9359 - 9418 10.9 12 7 Tu 1 . + CDS 9618 - 9824 229 ## EF1258 hypothetical protein - Term 9784 - 9834 6.2 13 8 Tu 1 . - CDS 9842 - 10621 1015 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 10778 - 10837 7.1 + Prom 10740 - 10799 6.1 14 9 Op 1 40/0.000 + CDS 10836 - 11555 911 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 15 9 Op 2 . + CDS 11555 - 13024 1518 ## COG0642 Signal transduction histidine kinase + Term 13026 - 13073 8.4 - Term 13019 - 13056 4.4 16 10 Op 1 . - CDS 13062 - 13550 401 ## EF1262 hypothetical protein 17 10 Op 2 . - CDS 13627 - 14328 442 ## EF1263 hypothetical protein - Prom 14360 - 14419 5.4 - Term 14381 - 14428 10.7 18 11 Tu 1 . - CDS 14434 - 16542 2302 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily - Prom 16611 - 16670 7.2 + Prom 16575 - 16634 6.7 19 12 Tu 1 . + CDS 16800 - 17972 1257 ## COG1092 Predicted SAM-dependent methyltransferases + Term 17983 - 18043 19.1 - Term 17979 - 18020 5.1 20 13 Tu 1 . - CDS 18039 - 18956 829 ## COG1039 Ribonuclease HIII - Prom 19152 - 19211 3.5 21 14 Tu 1 . + CDS 19199 - 21595 2271 ## COG0474 Cation transport ATPase + Term 21596 - 21654 14.9 + Prom 21598 - 21657 8.0 22 15 Tu 1 . + CDS 21737 - 23623 1659 ## COG4932 Predicted outer membrane protein + Term 23659 - 23691 -0.2 + Prom 23664 - 23723 4.8 23 16 Op 1 32/0.000 + CDS 23829 - 24302 614 ## COG0779 Uncharacterized protein conserved in bacteria + Prom 24317 - 24376 2.3 24 16 Op 2 22/0.000 + CDS 24446 - 25645 787 ## PROTEIN SUPPORTED gi|17988250|ref|NP_540884.1| transcription elongation factor NusA 25 16 Op 3 8/0.000 + CDS 25666 - 25965 495 ## COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination 26 16 Op 4 10/0.000 + CDS 25955 - 26260 495 ## PROTEIN SUPPORTED gi|29375842|ref|NP_814996.1| ribosomal protein L7A family protein 27 16 Op 5 32/0.000 + CDS 26273 - 28669 2687 ## COG0532 Translation initiation factor 2 (IF-2; GTPase) 28 16 Op 6 . + CDS 28694 - 29044 648 ## COG0858 Ribosome-binding factor A + Term 29046 - 29105 15.0 29 17 Tu 1 . + CDS 29127 - 29357 104 ## gi|315153236|gb|EFT97252.1| hypothetical protein HMPREF9502_01271 + Term 29378 - 29426 13.0 30 18 Op 1 . - CDS 29417 - 29890 512 ## EF1276 hypothetical protein 31 18 Op 2 . - CDS 29937 - 30419 598 ## COG1396 Predicted transcriptional regulators - Prom 30639 - 30698 11.6 + Prom 30400 - 30459 6.3 32 19 Op 1 . + CDS 30636 - 30770 155 ## 33 19 Op 2 . + CDS 30801 - 31571 711 ## EF1279 DNA replication protein, putative 34 19 Op 3 . + CDS 31590 - 32432 802 ## COG1484 DNA replication protein 35 19 Op 4 . + CDS 32435 - 32527 134 ## 36 19 Op 5 . + CDS 32520 - 32891 307 ## EF1282 hypothetical protein 37 19 Op 6 . + CDS 32911 - 33318 535 ## EF1283 RinA family transcriptional regulator + Prom 33339 - 33398 4.2 38 20 Op 1 . + CDS 33564 - 33956 423 ## EF1284 structural protein, putative 39 20 Op 2 . + CDS 33969 - 34481 984 ## EF1285 major tail protein 40 20 Op 3 . + CDS 34514 - 34873 472 ## EF1286 hypothetical protein + Term 34881 - 34921 7.5 41 21 Op 1 . + CDS 34966 - 35259 338 ## EF1287 hypothetical protein 42 21 Op 2 . + CDS 35249 - 38182 3654 ## COG5412 Phage-related protein 43 21 Op 3 . + CDS 38184 - 39110 1239 ## EF1289 tail protein, putative 44 21 Op 4 . + CDS 39123 - 40580 1189 ## EF1290 structural protein, putative 45 21 Op 5 . + CDS 40613 - 42382 1672 ## EF1291 hypothetical protein 46 21 Op 6 . + CDS 42406 - 42801 501 ## COG4824 Phage-related holin (Lysis protein) + Term 42886 - 42936 16.2 + Prom 42855 - 42914 3.3 47 22 Tu 1 . + CDS 42947 - 44044 1356 ## COG5263 FOG: Glucan-binding domain (YG repeat) + Term 44050 - 44096 11.1 + Prom 44108 - 44167 4.9 48 23 Op 1 12/0.000 + CDS 44197 - 45117 938 ## COG0130 Pseudouridine synthase 49 23 Op 2 . + CDS 45143 - 46093 611 ## PROTEIN SUPPORTED gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 50 23 Op 3 . + CDS 46093 - 46689 618 ## COG3153 Predicted acetyltransferase + Term 46700 - 46752 17.2 + Prom 46742 - 46801 5.8 51 24 Op 1 3/0.115 + CDS 46839 - 47162 353 ## COG1695 Predicted transcriptional regulators 52 24 Op 2 . + CDS 47166 - 47507 478 ## COG4817 Uncharacterized protein conserved in bacteria 53 24 Op 3 . + CDS 47533 - 47793 274 ## EF1299 hypothetical protein + Term 47804 - 47864 0.7 + Prom 47867 - 47926 7.0 54 25 Op 1 2/0.164 + CDS 47952 - 49127 1045 ## COG0772 Bacterial cell division membrane protein 55 25 Op 2 . + CDS 49093 - 50241 924 ## COG0772 Bacterial cell division membrane protein + Term 50251 - 50315 11.8 - Term 50239 - 50302 13.3 56 26 Op 1 . - CDS 50303 - 51190 825 ## COG0583 Transcriptional regulator 57 26 Op 2 . - CDS 51214 - 51486 196 ## EF1303 LysR family transcriptional regulator 58 26 Op 3 . - CDS 51411 - 52088 596 ## COG0583 Transcriptional regulator - Prom 52113 - 52172 6.3 + Prom 52463 - 52522 2.8 59 27 Tu 1 . + CDS 52625 - 55285 2659 ## COG0474 Cation transport ATPase + Term 55338 - 55381 3.3 + Prom 55331 - 55390 5.4 60 28 Tu 1 . + CDS 55493 - 56677 1211 ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases + Term 56691 - 56734 6.1 + Prom 56794 - 56853 7.8 61 29 Op 1 21/0.000 + CDS 56903 - 57946 1189 ## COG1420 Transcriptional regulator of heat shock gene 62 29 Op 2 29/0.000 + CDS 58001 - 58540 797 ## COG0576 Molecular chaperone GrpE (heat shock protein) 63 29 Op 3 . + CDS 58600 - 60429 2582 ## COG0443 Molecular chaperone + Term 60449 - 60500 7.4 + Prom 60465 - 60524 2.5 64 30 Op 1 . + CDS 60544 - 60666 82 ## EF1309 hypothetical protein 65 30 Op 2 . + CDS 60721 - 61890 1560 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain + Term 62007 - 62059 14.2 + Prom 62035 - 62094 12.3 66 31 Op 1 . + CDS 62129 - 62863 832 ## COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases + Prom 62873 - 62932 5.5 67 31 Op 2 6/0.033 + CDS 62961 - 65153 193 ## PROTEIN SUPPORTED gi|229231694|ref|ZP_04356122.1| SSU ribosomal protein S1P 68 31 Op 3 . + CDS 65156 - 65641 333 ## COG3091 Uncharacterized protein conserved in bacteria + Term 65647 - 65689 9.6 + TRNA 65710 - 65796 56.4 # Leu GAG 0 0 69 32 Tu 1 . + CDS 66040 - 67257 1260 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase + Term 67260 - 67317 17.0 - Term 67248 - 67305 19.5 70 33 Tu 1 . - CDS 67323 - 67499 322 ## EF1315 hypothetical protein - Prom 67691 - 67750 4.6 + Prom 67452 - 67511 6.5 71 34 Op 1 . + CDS 67677 - 68504 980 ## EF1316 Cro/CI family transcriptional regulator + Prom 68519 - 68578 3.1 72 34 Op 2 . + CDS 68605 - 69753 1652 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase + Term 69761 - 69807 7.8 - Term 69755 - 69790 5.0 73 35 Op 1 . - CDS 69796 - 70182 609 ## EF1318 hypothetical protein 74 35 Op 2 . - CDS 70196 - 70855 776 ## EF1319 hypothetical protein - Prom 70908 - 70967 6.0 + Prom 70827 - 70886 5.7 75 36 Op 1 36/0.000 + CDS 71016 - 71717 344 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 76 36 Op 2 . + CDS 71727 - 74363 2295 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Prom 74466 - 74525 6.2 77 37 Op 1 . + CDS 74556 - 75080 650 ## EF1322 hypothetical protein 78 37 Op 2 . + CDS 75097 - 76566 2266 ## COG2268 Uncharacterized protein conserved in bacteria + Term 76581 - 76620 6.0 79 38 Tu 1 . + CDS 76713 - 76946 391 ## EF1324 hypothetical protein + Term 76958 - 77014 7.1 + TRNA 77043 - 77123 72.8 # Tyr GTA 0 0 + TRNA 77133 - 77204 67.6 # Gln TTG 0 0 80 39 Tu 1 . + CDS 77359 - 77538 250 ## EF1325 hypothetical protein + Term 77552 - 77606 9.3 - Term 77542 - 77590 10.0 81 40 Tu 1 . - CDS 77594 - 78202 512 ## COG1309 Transcriptional regulator - Prom 78310 - 78369 8.4 + Prom 78254 - 78313 8.3 82 41 Op 1 . + CDS 78381 - 82628 4483 ## COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) + Term 82654 - 82703 6.1 + Prom 82748 - 82807 7.3 83 41 Op 2 . + CDS 82835 - 83542 915 ## COG2188 Transcriptional regulators + Term 83554 - 83619 21.6 + Prom 83782 - 83841 15.1 84 42 Op 1 2/0.164 + CDS 83947 - 84240 454 ## COG4842 Uncharacterized protein conserved in bacteria + Term 84257 - 84296 5.3 85 42 Op 2 . + CDS 84307 - 87744 3557 ## COG1511 Predicted membrane protein 86 42 Op 3 . + CDS 87747 - 88244 219 ## gi|229550183|ref|ZP_04438908.1| conserved hypothetical protein 87 42 Op 4 . + CDS 88259 - 88528 337 ## gi|229550182|ref|ZP_04438907.1| conserved hypothetical protein 88 42 Op 5 4/0.066 + CDS 88525 - 89697 1450 ## COG4499 Predicted membrane protein 89 42 Op 6 . + CDS 89678 - 94126 4459 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 90 42 Op 7 . + CDS 94141 - 95013 706 ## BCZK0586 hypothetical protein 91 42 Op 8 . + CDS 95026 - 95472 558 ## gi|229550178|ref|ZP_04438903.1| conserved hypothetical protein 92 42 Op 9 . + CDS 95492 - 95764 347 ## gi|307288175|ref|ZP_07568185.1| hypothetical protein HMPREF9505_01581 93 42 Op 10 . + CDS 95778 - 96422 708 ## SGGBAA2069_c04950 hypothetical protein 94 42 Op 11 . + CDS 96438 - 97979 1539 ## GALLO_0562 hypothetical protein 95 42 Op 12 . + CDS 97976 - 98674 353 ## gi|255972951|ref|ZP_05423537.1| predicted protein 96 42 Op 13 . + CDS 98700 - 99398 851 ## gi|315155921|gb|EFT99937.1| hypothetical protein HMPREF9503_01688 97 42 Op 14 . + CDS 99386 - 100102 120 ## gi|229550172|ref|ZP_04438897.1| membrane protein + Prom 100265 - 100324 4.0 98 43 Op 1 . + CDS 100360 - 100788 681 ## SGGBAA2069_c05030 hypothetical protein 99 43 Op 2 . + CDS 100797 - 101246 408 ## GALLO_0570 hypothetical protein 100 43 Op 3 . + CDS 101320 - 101820 211 ## gi|229550169|ref|ZP_04438894.1| membrane protein + Prom 101895 - 101954 4.6 101 44 Tu 1 . + CDS 101978 - 102892 630 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 + Term 102898 - 102941 10.3 - Term 102886 - 102929 6.5 102 45 Op 1 . - CDS 102935 - 103396 650 ## EF1339 hypothetical protein - Prom 103422 - 103481 8.3 103 45 Op 2 . - CDS 103593 - 104093 595 ## EF1340 pheromone cAM373 precursor lipoprotein - Prom 104125 - 104184 9.8 - Term 104148 - 104210 15.2 104 46 Tu 1 . - CDS 104212 - 106551 2747 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component + Prom 106471 - 106530 9.4 105 47 Tu 1 . + CDS 106697 - 107185 409 ## EF1342 MarR family transcriptional regulator + Term 107190 - 107228 5.4 - Term 107177 - 107216 8.1 106 48 Op 1 20/0.000 - CDS 107223 - 108086 706 ## COG3833 ABC-type maltose transport systems, permease component 107 48 Op 2 19/0.000 - CDS 108090 - 109433 1085 ## COG1175 ABC-type sugar transport systems, permease components - Prom 109458 - 109517 5.5 - Term 109461 - 109508 7.0 108 48 Op 3 . - CDS 109519 - 110769 1672 ## COG2182 Maltose-binding periplasmic proteins/domains - Prom 110914 - 110973 13.2 + Prom 110923 - 110982 9.4 109 49 Op 1 7/0.000 + CDS 111029 - 112795 1617 ## COG0366 Glycosidases 110 49 Op 2 7/0.000 + CDS 112823 - 114448 1644 ## COG0366 Glycosidases 111 49 Op 3 . + CDS 114450 - 116063 1637 ## COG0366 Glycosidases + Term 116081 - 116132 12.9 + Prom 116140 - 116199 10.7 112 50 Tu 1 . + CDS 116233 - 116814 738 ## COG3548 Predicted integral membrane protein 113 51 Tu 1 . + CDS 117290 - 119899 2785 ## COG0474 Cation transport ATPase + Prom 120349 - 120408 6.0 114 52 Op 1 28/0.000 + CDS 120498 - 121613 1715 ## COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit 115 52 Op 2 24/0.000 + CDS 121616 - 122593 1343 ## COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit + Prom 122616 - 122675 1.6 116 52 Op 3 30/0.000 + CDS 122736 - 124025 1617 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes 117 52 Op 4 . + CDS 124033 - 125439 787 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 + Term 125513 - 125571 13.1 - Term 125514 - 125547 3.1 118 53 Tu 1 . - CDS 125553 - 126539 919 ## COG4936 Predicted sensor domain - Prom 126708 - 126767 5.7 + Prom 126555 - 126614 8.1 119 54 Op 1 . + CDS 126700 - 127839 1513 ## COG0371 Glycerol dehydrogenase and related enzymes 120 54 Op 2 9/0.000 + CDS 127852 - 128250 594 ## COG3412 Uncharacterized protein conserved in bacteria 121 54 Op 3 10/0.000 + CDS 128251 - 129234 1496 ## COG2376 Dihydroxyacetone kinase 122 54 Op 4 . + CDS 129247 - 129849 864 ## COG2376 Dihydroxyacetone kinase + Term 129863 - 129910 9.6 + Prom 129889 - 129948 10.6 123 55 Tu 1 . + CDS 129988 - 130755 781 ## EF1362 hypothetical protein + Term 130759 - 130809 15.0 - Term 130747 - 130796 15.6 124 56 Tu 1 . - CDS 130828 - 131979 1415 ## COG3425 3-hydroxy-3-methylglutaryl CoA synthase - Prom 132061 - 132120 6.6 + Prom 131946 - 132005 6.8 125 57 Tu 1 . + CDS 132165 - 134576 2726 ## COG1257 Hydroxymethylglutaryl-CoA reductase + Term 134582 - 134623 10.6 - Term 134514 - 134550 1.1 126 58 Op 1 . - CDS 134596 - 135648 990 ## COG0628 Predicted permease 127 58 Op 2 . - CDS 135665 - 136870 1095 ## COG1434 Uncharacterized conserved protein - Prom 136937 - 136996 8.3 - Term 136972 - 137003 2.1 128 59 Tu 1 . - CDS 137026 - 137226 316 ## COG1278 Cold shock proteins - Prom 137259 - 137318 5.1 - Term 137466 - 137510 9.1 129 60 Tu 1 . - CDS 137524 - 138645 1244 ## EF1368 hypothetical protein - Prom 138774 - 138833 6.9 130 61 Tu 1 . - CDS 138982 - 139332 394 ## COG1396 Predicted transcriptional regulators - Prom 139357 - 139416 6.0 + Prom 139321 - 139380 4.6 131 62 Tu 1 . + CDS 139524 - 140957 1220 ## COG0477 Permeases of the major facilitator superfamily + Term 140965 - 141017 15.1 + Prom 141011 - 141070 4.0 132 63 Op 1 1/0.311 + CDS 141162 - 141836 873 ## COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold 133 63 Op 2 3/0.115 + CDS 141846 - 143165 1385 ## COG4109 Predicted transcriptional regulator containing CBS domains 134 63 Op 3 . + CDS 143179 - 144132 926 ## PROTEIN SUPPORTED gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B + Prom 144159 - 144218 7.6 135 64 Tu 1 . + CDS 144246 - 144584 427 ## COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism + Term 144607 - 144659 13.3 - Term 144595 - 144644 11.9 136 65 Tu 1 . - CDS 144645 - 144956 440 ## EF1375 hypothetical protein - Prom 145097 - 145156 6.5 + Prom 144978 - 145037 7.9 137 66 Op 1 . + CDS 145099 - 146280 847 ## COG4767 Glycopeptide antibiotics resistance protein 138 66 Op 2 . + CDS 146343 - 147692 1589 ## COG0513 Superfamily II DNA and RNA helicases + Term 147714 - 147762 13.4 + Prom 148019 - 148078 9.7 139 67 Tu 1 . + CDS 148237 - 148920 516 ## EF1378 transcriptional regulator, putative + Term 148961 - 149012 3.0 140 68 Tu 1 . + CDS 149266 - 151908 3660 ## COG0013 Alanyl-tRNA synthetase + Term 151969 - 152016 8.5 + Prom 151966 - 152025 5.7 141 69 Op 1 9/0.000 + CDS 152111 - 152827 889 ## COG2384 Predicted SAM-dependent methyltransferase 142 69 Op 2 . + CDS 152811 - 153929 1357 ## COG0327 Uncharacterized conserved protein 143 69 Op 3 . + CDS 153959 - 155188 1809 ## COG2195 Di- and tripeptidases + Term 155199 - 155259 1.8 + Prom 155250 - 155309 6.3 144 70 Op 1 . + CDS 155334 - 155600 267 ## COG3326 Predicted membrane protein 145 70 Op 2 . + CDS 155620 - 156648 888 ## COG0392 Predicted integral membrane protein + Term 156653 - 156697 13.4 + Prom 156678 - 156737 10.1 146 71 Op 1 . + CDS 156789 - 157364 458 ## COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A 147 71 Op 2 . + CDS 157380 - 158204 727 ## COG2116 Formate/nitrite family of transporters 148 71 Op 3 . + CDS 158194 - 158775 570 ## EF1387 hypothetical protein 149 71 Op 4 23/0.000 + CDS 158763 - 159251 698 ## COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit 150 71 Op 5 2/0.164 + CDS 159263 - 160561 1131 ## COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit 151 71 Op 6 . + CDS 160564 - 163284 2654 ## COG3383 Uncharacterized anaerobic dehydrogenase 152 71 Op 7 5/0.033 + CDS 163302 - 164504 897 ## COG0303 Molybdopterin biosynthesis enzyme + Term 164695 - 164723 -0.9 + Prom 165173 - 165232 4.5 153 72 Op 1 6/0.033 + CDS 165306 - 165788 356 ## COG0315 Molybdenum cofactor biosynthesis enzyme 154 72 Op 2 . + CDS 165794 - 166759 754 ## COG2896 Molybdenum cofactor biosynthesis enzyme 155 72 Op 3 . + CDS 166762 - 167196 373 ## COG2258 Uncharacterized protein conserved in bacteria 156 72 Op 4 3/0.115 + CDS 167189 - 167671 241 ## PROTEIN SUPPORTED gi|134277849|ref|ZP_01764564.1| ribosomal protein S16 157 72 Op 5 1/0.311 + CDS 167675 - 168646 875 ## COG0303 Molybdopterin biosynthesis enzyme 158 72 Op 6 23/0.000 + CDS 168665 - 169465 965 ## COG0725 ABC-type molybdate transport system, periplasmic component 159 72 Op 7 6/0.033 + CDS 169474 - 170145 606 ## COG4149 ABC-type molybdate transport system, permease component 160 72 Op 8 . + CDS 170142 - 171146 819 ## COG1118 ABC-type sulfate/molybdate transport systems, ATPase component + Term 171214 - 171251 1.7 + Prom 171149 - 171208 6.1 161 73 Tu 1 . + CDS 171268 - 173370 2636 ## COG2217 Cation transport ATPase + Term 173422 - 173475 14.7 - Term 173371 - 173408 -0.6 162 74 Tu 1 . - CDS 173491 - 173676 106 ## gi|229545914|ref|ZP_04434639.1| hypothetical protein HMPREF0349_1131 - Prom 173711 - 173770 3.6 + Prom 173548 - 173607 5.5 163 75 Op 1 . + CDS 173639 - 174082 549 ## EF1402 hypothetical protein 164 75 Op 2 3/0.115 + CDS 174102 - 174650 527 ## COG1286 Uncharacterized membrane protein, required for colicin V production 165 76 Op 1 3/0.115 + CDS 174761 - 177127 3079 ## COG1193 Mismatch repair ATPase (MutS family) + Prom 177134 - 177193 7.1 166 76 Op 2 4/0.066 + CDS 177225 - 177539 529 ## COG0526 Thiol-disulfide isomerase and thioredoxins + Term 177571 - 177624 11.0 + Prom 177618 - 177677 8.2 167 77 Tu 1 . + CDS 177704 - 179500 1877 ## COG0322 Nuclease subunit of the excinuclease complex + Term 179509 - 179561 9.6 + Prom 179503 - 179562 4.9 168 78 Tu 1 . + CDS 179652 - 179909 257 ## EF1407 hypothetical protein + Prom 179915 - 179974 6.1 169 79 Op 1 9/0.000 + CDS 180014 - 180913 276 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 170 79 Op 2 . + CDS 180906 - 182168 1133 ## COG1668 ABC-type Na+ efflux pump, permease component + Term 182188 - 182240 14.2 171 80 Tu 1 . - CDS 182204 - 183202 1146 ## COG1609 Transcriptional regulators - Prom 183311 - 183370 8.9 + Prom 183247 - 183306 8.8 172 81 Tu 1 . + CDS 183344 - 184738 1724 ## COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases + Term 184743 - 184789 11.2 173 82 Tu 1 . - CDS 184764 - 185198 606 ## EF1412 hypothetical protein - Prom 185262 - 185321 4.0 + Prom 185400 - 185459 2.0 174 83 Tu 1 . + CDS 185534 - 186982 1295 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains + Term 186989 - 187039 15.7 - Term 186981 - 187021 10.1 175 84 Tu 1 . - CDS 187023 - 188309 1258 ## COG2081 Predicted flavoproteins - Prom 188366 - 188425 5.2 - Term 188374 - 188428 12.1 176 85 Tu 1 . - CDS 188431 - 189489 810 ## COG4748 Uncharacterized conserved protein - Prom 189648 - 189707 11.3 + Prom 189645 - 189704 9.3 177 86 Op 1 . + CDS 189729 - 191075 1694 ## COG0334 Glutamate dehydrogenase/leucine dehydrogenase + Term 191076 - 191127 9.2 + Prom 191108 - 191167 7.4 178 86 Op 2 . + CDS 191257 - 192606 1843 ## COG0166 Glucose-6-phosphate isomerase + Term 192615 - 192682 25.0 - Term 192603 - 192669 23.6 179 87 Op 1 . - CDS 192672 - 192851 233 ## EF1490 hypothetical protein 180 87 Op 2 . - CDS 192910 - 193353 562 ## COG1780 Protein involved in ribonucleotide reduction - Prom 193458 - 193517 10.9 + Prom 193418 - 193477 8.9 181 88 Op 1 . + CDS 193726 - 194049 569 ## EF1492 V-type ATPase, subunit F 182 88 Op 2 16/0.000 + CDS 194039 - 196018 2175 ## COG1269 Archaeal/vacuolar-type H+-ATPase subunit I 183 88 Op 3 . + CDS 196046 - 196519 793 ## COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K 184 88 Op 4 . + CDS 196536 - 197117 915 ## EF1495 V-type ATPase, subunit E 185 88 Op 5 13/0.000 + CDS 197134 - 198135 1043 ## COG1527 Archaeal/vacuolar-type H+-ATPase subunit C 186 88 Op 6 12/0.000 + CDS 198125 - 198436 396 ## COG1436 Archaeal/vacuolar-type H+-ATPase subunit F 187 88 Op 7 16/0.000 + CDS 198454 - 200235 2360 ## COG1155 Archaeal/vacuolar-type H+-ATPase subunit A 188 88 Op 8 16/0.000 + CDS 200228 - 201604 1873 ## COG1156 Archaeal/vacuolar-type H+-ATPase subunit B 189 88 Op 9 . + CDS 201609 - 202244 711 ## COG1394 Archaeal/vacuolar-type H+-ATPase subunit D + Term 202258 - 202305 3.2 190 88 Op 10 . + CDS 202319 - 202708 510 ## EF1501 hypothetical protein + Term 202733 - 202783 12.4 + Prom 202767 - 202826 10.4 191 89 Op 1 . + CDS 202847 - 203356 447 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 192 89 Op 2 . + CDS 203357 - 204454 910 ## gi|229550078|ref|ZP_04438803.1| conserved hypothetical protein + Term 204512 - 204562 2.3 193 90 Tu 1 . - CDS 204565 - 204987 445 ## EF1502 beta-lactamase, putative - Prom 205053 - 205112 2.7 194 91 Op 1 . - CDS 205116 - 205511 274 ## EF1502 beta-lactamase, putative 195 91 Op 2 . - CDS 205606 - 207486 1669 ## COG3855 Uncharacterized protein conserved in bacteria - Prom 207540 - 207599 6.7 + Prom 207616 - 207675 3.5 196 92 Tu 1 . + CDS 207702 - 208994 1411 ## COG0019 Diaminopimelate decarboxylase + Term 209006 - 209043 1.1 + Prom 208996 - 209055 9.5 197 93 Tu 1 . + CDS 209141 - 210133 993 ## COG1073 Hydrolases of the alpha/beta superfamily + Term 210138 - 210175 1.5 198 94 Tu 1 . - CDS 210130 - 210681 321 ## EF1506 hypothetical protein - Prom 210712 - 210771 5.4 + Prom 210868 - 210927 5.5 199 95 Op 1 . + CDS 210967 - 211821 440 ## EF1508 hypothetical protein + Prom 211856 - 211915 5.6 200 95 Op 2 . + CDS 212034 - 212573 451 ## EF1509 hypothetical protein + Term 212610 - 212657 9.1 - Term 212588 - 212654 15.1 201 96 Tu 1 . - CDS 212671 - 213015 604 ## COG2151 Predicted metal-sulfur cluster biosynthetic enzyme - Prom 213144 - 213203 6.3 + Prom 213092 - 213151 7.3 202 97 Op 1 1/0.311 + CDS 213291 - 214355 1079 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 203 97 Op 2 . + CDS 214372 - 215748 1077 ## COG1305 Transglutaminase-like enzymes, putative cysteine proteases 204 97 Op 3 . + CDS 215766 - 217418 1613 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Term 217424 - 217479 3.3 + Prom 217496 - 217555 10.5 205 98 Op 1 7/0.000 + CDS 217728 - 218561 971 ## COG3711 Transcriptional antiterminator 206 98 Op 2 . + CDS 218598 - 220595 2599 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Term 220599 - 220645 10.2 + Prom 220679 - 220738 5.6 207 99 Op 1 . + CDS 220836 - 221030 188 ## gi|229550064|ref|ZP_04438789.1| conserved hypothetical protein 208 99 Op 2 . + CDS 221045 - 222316 807 ## COG3711 Transcriptional antiterminator 209 99 Op 3 . + CDS 222306 - 222758 515 ## CAR_c23180 hypothetical protein 210 99 Op 4 8/0.000 + CDS 222758 - 223075 507 ## COG1445 Phosphotransferase system fructose-specific component IIB 211 99 Op 5 7/0.000 + CDS 223095 - 223544 481 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) + Prom 223573 - 223632 7.8 212 99 Op 6 1/0.311 + CDS 223653 - 224753 1377 ## COG1299 Phosphotransferase system, fructose-specific IIC component 213 100 Tu 1 . + CDS 224891 - 225580 666 ## COG0036 Pentose-5-phosphate-3-epimerase + Term 225628 - 225675 5.2 + Prom 225748 - 225807 6.2 214 101 Tu 1 . + CDS 225904 - 226488 813 ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) + Term 226491 - 226558 17.4 + Prom 226519 - 226578 5.0 215 102 Tu 1 . + CDS 226617 - 228953 2583 ## COG0474 Cation transport ATPase + Term 229056 - 229118 14.2 + Prom 229108 - 229167 3.9 216 103 Op 1 31/0.000 + CDS 229269 - 231155 1815 ## COG0358 DNA primase (bacterial type) + Term 231160 - 231205 4.3 + Prom 231175 - 231234 2.9 217 103 Op 2 . + CDS 231263 - 232369 1454 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) + Term 232382 - 232425 11.5 + Prom 232430 - 232489 4.5 218 104 Tu 1 . + CDS 232521 - 234596 2379 ## EF1523 hypothetical protein + Term 234610 - 234658 11.0 219 105 Tu 1 . + CDS 234670 - 235551 525 ## PROTEIN SUPPORTED gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains + Prom 235553 - 235612 8.2 220 106 Tu 1 . + CDS 235667 - 236116 510 ## COG0735 Fe2+/Zn2+ uptake regulation proteins + Term 236122 - 236162 8.2 - Term 236102 - 236156 14.3 221 107 Tu 1 . - CDS 236167 - 237177 1198 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase - Prom 237246 - 237305 5.7 + Prom 237341 - 237400 4.5 222 108 Tu 1 . + CDS 237465 - 238781 1865 ## COG0536 Predicted GTPase + Term 238785 - 238829 7.1 + Prom 238825 - 238884 11.3 223 109 Op 1 . + CDS 238920 - 239222 323 ## EF1528 hypothetical protein 224 109 Op 2 . + CDS 239249 - 240547 1509 ## COG1455 Phosphotransferase system cellobiose-specific component IIC + Term 240562 - 240616 17.0 + Prom 240637 - 240696 10.2 225 110 Op 1 . + CDS 240772 - 241311 660 ## EF1531 TetR family transcriptional regulator + Prom 241358 - 241417 4.7 226 110 Op 2 . + CDS 241454 - 241828 523 ## COG5294 Uncharacterized protein conserved in bacteria + Term 241829 - 241884 17.1 - Term 241815 - 241871 15.2 227 111 Tu 1 . - CDS 241872 - 242621 852 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family - Prom 242762 - 242821 7.1 + Prom 242724 - 242783 8.3 228 112 Op 1 . + CDS 242803 - 243894 1412 ## COG3589 Uncharacterized conserved protein + Term 243922 - 243973 12.2 + Prom 244003 - 244062 8.9 229 112 Op 2 . + CDS 244089 - 245018 1136 ## COG1073 Hydrolases of the alpha/beta superfamily + Term 245050 - 245107 16.6 + Prom 245100 - 245159 6.1 230 113 Op 1 . + CDS 245187 - 246077 1042 ## COG4974 Site-specific recombinase XerD 231 113 Op 2 21/0.000 + CDS 246151 - 246936 937 ## COG1354 Uncharacterized conserved protein 232 113 Op 3 12/0.000 + CDS 246933 - 247538 765 ## COG1386 Predicted transcriptional regulator containing the HTH domain 233 113 Op 4 . + CDS 247542 - 248258 995 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases + Term 248271 - 248314 7.1 234 114 Op 1 . + CDS 248603 - 249268 646 ## COG3601 Predicted membrane protein + Term 249273 - 249329 11.3 + Prom 249364 - 249423 7.0 235 114 Op 2 . + CDS 249449 - 250855 1263 ## COG4640 Predicted membrane protein + Term 250856 - 250906 17.3 - Term 250735 - 250774 -1.0 236 115 Tu 1 . - CDS 250878 - 251096 197 ## COG1141 Ferredoxin - Prom 251140 - 251199 6.8 + Prom 250880 - 250939 5.4 237 116 Op 1 4/0.066 + CDS 251132 - 252166 727 ## COG4955 Uncharacterized protein conserved in bacteria 238 116 Op 2 . + CDS 252173 - 253609 1229 ## COG0514 Superfamily II DNA helicase 239 116 Op 3 . + CDS 253685 - 254308 799 ## EF1546 LysM domain-containing protein + Term 254384 - 254437 11.3 + Prom 254441 - 254500 4.6 240 117 Op 1 21/0.000 + CDS 254544 - 255224 868 ## COG0283 Cytidylate kinase + Prom 255230 - 255289 7.8 241 117 Op 2 3/0.115 + CDS 255338 - 256549 2026 ## PROTEIN SUPPORTED gi|229550028|ref|ZP_04438753.1| 30S ribosomal protein S1 + Term 256572 - 256626 16.2 + Prom 256637 - 256696 4.3 242 118 Tu 1 . + CDS 256723 - 258033 1818 ## COG1160 Predicted GTPases + Term 258168 - 258209 -0.1 + Prom 258069 - 258128 6.6 243 119 Tu 1 . + CDS 258281 - 258556 179 ## PROTEIN SUPPORTED gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 + Term 258569 - 258604 7.1 + Prom 258595 - 258654 6.5 244 120 Op 1 . + CDS 258863 - 259903 873 ## EF1552 hypothetical protein 245 120 Op 2 4/0.066 + CDS 259913 - 261169 1801 ## COG0457 FOG: TPR repeat 246 120 Op 3 . + CDS 261179 - 261718 617 ## COG5582 Uncharacterized conserved protein + Term 261720 - 261766 12.3 - Term 261708 - 261754 12.3 247 121 Tu 1 . - CDS 261756 - 262640 902 ## COG1284 Uncharacterized conserved protein - Prom 262660 - 262719 2.1 + Prom 262616 - 262675 8.6 248 122 Op 1 3/0.115 + CDS 262764 - 263114 426 ## COG1694 Predicted pyrophosphatase 249 122 Op 2 1/0.311 + CDS 263107 - 263886 1009 ## COG0289 Dihydrodipicolinate reductase 250 122 Op 3 . + CDS 263829 - 265103 1253 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase 251 122 Op 4 . + CDS 265103 - 265477 483 ## COG5496 Predicted thioesterase + Prom 265480 - 265539 3.9 252 122 Op 5 . + CDS 265567 - 266022 652 ## EF1560 hypothetical protein + Term 266031 - 266076 11.3 + Prom 266415 - 266474 2.5 253 123 Op 1 . + CDS 266510 - 267376 961 ## COG0169 Shikimate 5-dehydrogenase 254 123 Op 2 3/0.115 + CDS 267413 - 268438 1252 ## COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase 255 123 Op 3 7/0.000 + CDS 268461 - 269537 1346 ## COG0337 3-dehydroquinate synthetase 256 123 Op 4 1/0.311 + CDS 269539 - 270705 1464 ## COG0082 Chorismate synthase 257 123 Op 5 . + CDS 270739 - 271545 678 ## COG0287 Prephenate dehydrogenase 258 123 Op 6 6/0.033 + CDS 271580 - 271834 241 ## COG0287 Prephenate dehydrogenase 259 123 Op 7 5/0.033 + CDS 271847 - 273127 1410 ## COG0128 5-enolpyruvylshikimate-3-phosphate synthase 260 123 Op 8 2/0.164 + CDS 273147 - 273653 582 ## COG0703 Shikimate kinase 261 123 Op 9 1/0.311 + CDS 273661 - 274509 868 ## COG0077 Prephenate dehydratase + Term 274522 - 274575 11.4 + Prom 274560 - 274619 5.7 262 124 Op 1 . + CDS 274653 - 275825 1119 ## COG1316 Transcriptional regulator 263 124 Op 2 . + CDS 275901 - 276749 1070 ## COG1307 Uncharacterized protein conserved in bacteria + Term 276750 - 276804 14.5 + Prom 276808 - 276867 8.3 264 125 Op 1 . + CDS 276943 - 277137 237 ## EF1571 hypothetical protein 265 125 Op 2 . + CDS 277149 - 277625 469 ## EF1572 hypothetical protein + Prom 277682 - 277741 9.4 266 126 Op 1 . + CDS 277769 - 278035 290 ## EF1573 hypothetical protein 267 126 Op 2 . + CDS 278071 - 280125 2234 ## COG0025 NhaP-type Na+/H+ and K+/H+ antiporters + Term 280132 - 280184 9.0 + Prom 280131 - 280190 8.9 268 127 Op 1 1/0.311 + CDS 280236 - 282125 2366 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 269 127 Op 2 16/0.000 + CDS 282143 - 283090 1184 ## COG0207 Thymidylate synthase 270 127 Op 3 . + CDS 283108 - 283602 573 ## COG0262 Dihydrofolate reductase 271 127 Op 4 . + CDS 283626 - 284795 1165 ## COG1600 Uncharacterized Fe-S protein + Term 284923 - 284958 -1.0 - Term 284763 - 284800 2.4 272 128 Tu 1 . - CDS 284809 - 285429 693 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) - Prom 285453 - 285512 6.2 + Prom 285498 - 285557 6.0 273 129 Op 1 4/0.066 + CDS 285580 - 285822 394 ## COG4224 Uncharacterized protein conserved in bacteria 274 129 Op 2 . + CDS 285894 - 287888 2529 ## COG0021 Transketolase + Term 287897 - 287950 11.2 - Term 287890 - 287929 6.0 275 130 Tu 1 . - CDS 287940 - 289130 1225 ## COG0477 Permeases of the major facilitator superfamily - Prom 289248 - 289307 7.4 + Prom 289234 - 289293 6.2 276 131 Tu 1 . + CDS 289485 - 290345 1094 ## COG1705 Muramidase (flagellum-specific) + Term 290371 - 290414 10.3 + Prom 290453 - 290512 10.2 277 132 Op 1 . + CDS 290574 - 291506 1048 ## PROTEIN SUPPORTED gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 + Term 291523 - 291567 1.1 + Prom 291560 - 291619 6.0 278 132 Op 2 . + CDS 291645 - 292088 655 ## COG0735 Fe2+/Zn2+ uptake regulation proteins + Term 292148 - 292190 9.2 + Prom 292211 - 292270 8.5 279 133 Tu 1 . + CDS 292386 - 293726 1840 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases + Term 293742 - 293779 7.3 - Term 293730 - 293767 7.3 280 134 Tu 1 . - CDS 293774 - 294382 728 ## COG1051 ADP-ribose pyrophosphatase - Prom 294549 - 294608 7.8 + Prom 294476 - 294535 4.8 281 135 Op 1 1/0.311 + CDS 294589 - 295059 286 ## COG0456 Acetyltransferases 282 135 Op 2 . + CDS 295079 - 295606 579 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 283 136 Tu 1 . - CDS 295661 - 296479 890 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 296663 - 296722 8.5 + Prom 296463 - 296522 7.1 284 137 Op 1 35/0.000 + CDS 296616 - 298364 225 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 285 137 Op 2 1/0.311 + CDS 298357 - 300135 236 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 + Term 300145 - 300189 5.1 + Prom 300137 - 300196 3.1 286 138 Tu 1 . + CDS 300224 - 300649 468 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes + Term 300709 - 300750 5.2 + Prom 300693 - 300752 8.2 287 139 Tu 1 . + CDS 300789 - 301799 1309 ## EF1596 putative lipoprotein + Term 301845 - 301883 5.4 + Prom 302018 - 302077 10.0 288 140 Tu 1 . + CDS 302102 - 303538 1515 ## COG0753 Catalase + Term 303553 - 303608 7.4 + Prom 303665 - 303724 5.1 289 141 Op 1 . + CDS 303761 - 304522 500 ## COG1349 Transcriptional regulators of sugar metabolism 290 141 Op 2 . + CDS 304531 - 305160 582 ## COG0546 Predicted phosphatases + Term 305273 - 305327 1.8 + Prom 305205 - 305264 1.6 291 142 Op 1 . + CDS 305379 - 305501 90 ## gi|312900796|ref|ZP_07760093.1| integrase core domain protein 292 142 Op 2 . + CDS 305551 - 306375 318 ## COG2826 Transposase and inactivated derivatives, IS30 family - Term 306607 - 306665 4.0 293 143 Tu 1 . - CDS 306670 - 308103 1250 ## COG0415 Deoxyribodipyrimidine photolyase - Prom 308129 - 308188 4.1 - Term 308179 - 308222 8.6 294 144 Tu 1 . - CDS 308237 - 309118 866 ## EF1599 transcriptional regulator Cro/CI family protein - Prom 309282 - 309341 4.7 + Prom 309082 - 309141 7.5 295 145 Tu 1 . + CDS 309164 - 309226 67 ## + Term 309237 - 309280 10.1 - Term 309338 - 309384 11.3 296 146 Op 1 9/0.000 - CDS 309391 - 311319 2263 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 297 146 Op 2 . - CDS 311336 - 313009 1721 ## COG0366 Glycosidases - Prom 313067 - 313126 8.0 + Prom 313061 - 313120 10.5 298 147 Op 1 5/0.033 + CDS 313240 - 314712 996 ## COG1621 Beta-fructosidases (levanase/invertase) 299 147 Op 2 . + CDS 314731 - 315711 907 ## COG1609 Transcriptional regulators + Term 315716 - 315745 1.4 - Term 315704 - 315733 1.4 300 148 Tu 1 . - CDS 315771 - 315932 178 ## EF1605 hypothetical protein - Prom 315960 - 316019 4.8 - Term 315989 - 316030 2.1 301 149 Op 1 8/0.000 - CDS 316042 - 317451 1585 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 302 149 Op 2 . - CDS 317451 - 319331 1857 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 319492 - 319551 9.5 - Term 319554 - 319604 11.7 303 150 Tu 1 . - CDS 319613 - 321073 1394 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes - Prom 321198 - 321257 6.8 + Prom 321160 - 321219 4.7 304 151 Tu 1 . + CDS 321254 - 321805 593 ## COG4843 Uncharacterized protein conserved in bacteria - Term 321771 - 321821 11.5 305 152 Op 1 . - CDS 321864 - 322748 788 ## EF1610 hypothetical protein 306 152 Op 2 2/0.164 - CDS 322820 - 323746 1330 ## COG1227 Inorganic pyrophosphatase/exopolyphosphatase - Prom 323772 - 323831 7.5 - Term 323774 - 323837 12.2 307 153 Op 1 11/0.000 - CDS 323842 - 324606 740 ## COG1180 Pyruvate-formate lyase-activating enzyme - Term 324622 - 324656 2.0 308 153 Op 2 . - CDS 324683 - 326929 2587 ## COG1882 Pyruvate-formate lyase - Prom 326982 - 327041 9.7 - Term 327153 - 327198 14.6 309 154 Op 1 24/0.000 - CDS 327220 - 329682 2865 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 310 154 Op 2 2/0.164 - CDS 329695 - 331752 2722 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit - Prom 331876 - 331935 7.7 311 155 Op 1 . - CDS 331957 - 332385 545 ## COG1832 Predicted CoA-binding protein - Prom 332408 - 332467 8.0 312 155 Op 2 2/0.164 - CDS 332473 - 332916 609 ## COG4766 Ethanolamine utilization protein 313 155 Op 3 . - CDS 332929 - 334029 1770 ## COG3192 Ethanolamine utilization protein 314 155 Op 4 . - CDS 334042 - 334305 507 ## COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein 315 155 Op 5 . - CDS 334318 - 334917 513 ## EF1620 hypothetical protein 316 155 Op 6 . - CDS 334932 - 335558 727 ## COG4869 Propanediol utilization protein 317 155 Op 7 . - CDS 335571 - 336140 303 ## EF1622 hypothetical protein - Term 336150 - 336198 10.0 318 155 Op 8 2/0.164 - CDS 336208 - 336498 556 ## COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein - Prom 336520 - 336579 5.4 - Term 336543 - 336584 -0.5 319 156 Op 1 2/0.164 - CDS 336622 - 338100 1682 ## COG1012 NAD-dependent aldehyde dehydrogenases 320 156 Op 2 4/0.066 - CDS 338091 - 338609 740 ## COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein 321 156 Op 3 6/0.033 - CDS 338623 - 339276 1038 ## COG4816 Ethanolamine utilization protein 322 156 Op 4 8/0.000 - CDS 339290 - 340201 1299 ## COG4302 Ethanolamine ammonia-lyase, small subunit 323 156 Op 5 5/0.033 - CDS 340219 - 341583 1694 ## COG4303 Ethanolamine ammonia-lyase, large subunit 324 156 Op 6 2/0.164 - CDS 341601 - 343025 1507 ## COG4819 Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition - Term 343046 - 343105 -0.7 325 156 Op 7 3/0.115 - CDS 343116 - 344549 1278 ## COG3920 Signal transduction histidine kinase 326 156 Op 8 . - CDS 344550 - 345122 746 ## COG3707 Response regulator with putative antiterminator output domain 327 156 Op 9 . - CDS 345150 - 345497 425 ## COG4810 Ethanolamine utilization protein - Prom 345517 - 345576 6.7 - Term 345520 - 345578 12.2 328 157 Tu 1 . - CDS 345657 - 346787 1140 ## COG1454 Alcohol dehydrogenase, class IV - Prom 346895 - 346954 9.7 - Term 347074 - 347112 -0.7 329 158 Op 1 . - CDS 347274 - 347855 866 ## COG2096 Uncharacterized conserved protein 330 158 Op 2 . - CDS 347852 - 348295 608 ## COG4917 Ethanolamine utilization protein - Term 348304 - 348351 -0.7 331 159 Op 1 35/0.000 - CDS 348437 - 349204 220 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 332 159 Op 2 33/0.000 - CDS 349201 - 350208 1125 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 333 159 Op 3 . - CDS 350201 - 351160 1283 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component - Prom 351181 - 351240 3.7 + Prom 351510 - 351569 7.5 334 160 Tu 1 . + CDS 351713 - 352342 648 ## COG0344 Predicted membrane protein + Term 352344 - 352394 16.3 - Term 352332 - 352382 16.3 335 161 Op 1 . - CDS 352384 - 353259 1157 ## COG2017 Galactose mutarotase and related enzymes 336 161 Op 2 4/0.066 - CDS 353293 - 354075 935 ## COG4465 Pleiotropic transcriptional repressor 337 161 Op 3 24/0.000 - CDS 354096 - 355202 961 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 338 161 Op 4 4/0.066 - CDS 355184 - 355660 688 ## COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit 339 161 Op 5 5/0.033 - CDS 355689 - 356588 877 ## COG4974 Site-specific recombinase XerD - Prom 356685 - 356744 8.0 - Term 356727 - 356778 4.1 340 162 Tu 1 . - CDS 356800 - 358107 1675 ## COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation - Prom 358127 - 358186 3.6 - Term 358169 - 358206 5.1 341 163 Tu 1 . - CDS 358215 - 360293 2098 ## COG0550 Topoisomerase IA - Prom 360356 - 360415 5.0 342 164 Op 1 . - CDS 360478 - 361131 535 ## COG1266 Predicted metal-dependent membrane protease - Prom 361151 - 361210 2.1 343 164 Op 2 2/0.164 - CDS 361222 - 362085 818 ## COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake 344 164 Op 3 8/0.000 - CDS 362146 - 362913 1263 ## COG0164 Ribonuclease HII 345 164 Op 4 . - CDS 362915 - 363766 990 ## COG1161 Predicted GTPases - Prom 363970 - 364029 4.4 - Term 363915 - 363962 7.2 346 165 Tu 1 . - CDS 364042 - 364983 945 ## COG1893 Ketopantoate reductase - Prom 365077 - 365136 7.0 + Prom 365057 - 365116 10.2 347 166 Tu 1 . + CDS 365160 - 366050 788 ## COG0583 Transcriptional regulator 348 167 Tu 1 . - CDS 366059 - 367111 1317 ## COG3641 Predicted membrane protein, putative toxin regulator - Prom 367134 - 367193 3.0 - Term 367176 - 367224 7.3 349 168 Op 1 24/0.000 - CDS 367255 - 368553 1594 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes 350 168 Op 2 28/0.000 - CDS 368577 - 369563 1431 ## COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit 351 168 Op 3 5/0.033 - CDS 369585 - 370571 1266 ## COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit 352 168 Op 4 2/0.164 - CDS 370588 - 371997 830 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 353 168 Op 5 3/0.115 - CDS 372003 - 373085 1256 ## COG3426 Butyrate kinase 354 168 Op 6 . - CDS 373104 - 373925 666 ## COG0280 Phosphotransacetylase - Prom 373951 - 374010 8.1 + Prom 374126 - 374185 8.1 355 169 Tu 1 . + CDS 374207 - 375241 1093 ## COG1434 Uncharacterized conserved protein + Term 375247 - 375286 5.3 - Term 375235 - 375274 9.1 356 170 Op 1 . - CDS 375301 - 376023 630 ## EF1665 hypothetical protein - Prom 376049 - 376108 7.9 357 170 Op 2 . - CDS 376128 - 376826 523 ## EF1666 hypothetical protein - Prom 376848 - 376907 9.0 + Prom 376872 - 376931 4.3 358 171 Tu 1 . + CDS 377077 - 377871 857 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) + Term 377885 - 377933 13.3 + Prom 377914 - 377973 9.6 359 172 Op 1 3/0.115 + CDS 378000 - 378428 553 ## COG1846 Transcriptional regulators 360 172 Op 2 7/0.000 + CDS 378439 - 379401 1281 ## COG0346 Lactoylglutathione lyase and related lyases 361 172 Op 3 . + CDS 379414 - 380016 560 ## COG0400 Predicted esterase + Term 380024 - 380069 14.1 - Term 380012 - 380056 13.1 362 173 Tu 1 . - CDS 380096 - 381037 1148 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases - Prom 381071 - 381130 8.9 363 174 Op 1 36/0.000 - CDS 381155 - 382438 1351 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 364 174 Op 2 . - CDS 382439 - 383119 288 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) - Prom 383195 - 383254 3.4 - Term 383246 - 383306 11.2 365 175 Op 1 . - CDS 383312 - 384043 513 ## EF1674 hypothetical protein 366 175 Op 2 8/0.000 - CDS 384045 - 384899 805 ## COG1131 ABC-type multidrug transport system, ATPase component 367 175 Op 3 . - CDS 384896 - 385264 519 ## COG1725 Predicted transcriptional regulators - Prom 385298 - 385357 8.8 - Term 385330 - 385379 14.2 368 176 Tu 1 . - CDS 385413 - 385856 563 ## EF1677 putative lipoprotein - Prom 385876 - 385935 2.9 - Term 385921 - 385972 11.2 369 177 Op 1 . - CDS 385977 - 386531 552 ## COG0681 Signal peptidase I 370 177 Op 2 1/0.311 - CDS 386550 - 387983 1705 ## COG0793 Periplasmic protease - Prom 388019 - 388078 4.5 - Term 388036 - 388074 5.4 371 178 Op 1 2/0.164 - CDS 388080 - 388298 303 ## COG4479 Uncharacterized protein conserved in bacteria 372 178 Op 2 1/0.311 - CDS 388304 - 388819 676 ## COG0225 Peptide methionine sulfoxide reductase 373 178 Op 3 3/0.115 - CDS 388836 - 389480 670 ## COG4698 Uncharacterized protein conserved in bacteria 374 178 Op 4 2/0.164 - CDS 389482 - 390381 943 ## COG2755 Lysophospholipase L1 and related esterases - Term 390393 - 390435 1.1 375 179 Tu 1 . - CDS 390485 - 391327 1056 ## COG1307 Uncharacterized protein conserved in bacteria - Prom 391396 - 391455 7.7 + Prom 391322 - 391381 4.8 376 180 Tu 1 . + CDS 391459 - 392112 730 ## COG1272 Predicted membrane protein, hemolysin III homolog + Term 392127 - 392165 9.5 + Prom 392209 - 392268 7.3 377 181 Tu 1 . + CDS 392306 - 392503 207 ## EF1686 hypothetical protein + Term 392567 - 392603 8.2 - Term 392545 - 392602 15.6 378 182 Op 1 7/0.000 - CDS 392609 - 393121 815 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 379 182 Op 2 3/0.115 - CDS 393124 - 395436 2212 ## COG0608 Single-stranded DNA-specific exonuclease - Prom 395512 - 395571 3.1 - Term 395505 - 395552 7.4 380 183 Op 1 . - CDS 395591 - 396058 683 ## COG5416 Uncharacterized integral membrane protein 381 183 Op 2 4/0.066 - CDS 396075 - 396863 994 ## COG0300 Short-chain dehydrogenases of various substrate specificities 382 183 Op 3 . - CDS 396864 - 397805 1035 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III - Prom 397832 - 397891 8.6 - Term 397971 - 398011 5.1 383 184 Tu 1 . - CDS 398020 - 398586 576 ## EF1692 hypothetical protein - Prom 398610 - 398669 6.6 - Term 398664 - 398696 2.4 384 185 Op 1 19/0.000 - CDS 398707 - 398952 372 ## COG1837 Predicted RNA-binding protein (contains KH domain) 385 185 Op 2 . - CDS 398964 - 399257 493 ## PROTEIN SUPPORTED gi|227518885|ref|ZP_03948934.1| ribosomal protein S16 - Prom 399278 - 399337 4.0 386 186 Tu 1 . - CDS 399386 - 400189 733 ## EF1695 acetyltransferase - Prom 400287 - 400346 7.5 + Prom 400175 - 400234 10.5 387 187 Op 1 . + CDS 400331 - 400885 734 ## COG0431 Predicted flavoprotein + Term 400899 - 400951 13.5 + Prom 400893 - 400952 10.8 388 187 Op 2 . + CDS 401006 - 401758 796 ## COG0789 Predicted transcriptional regulators + Term 401760 - 401818 18.0 - Term 401739 - 401808 19.1 389 188 Op 1 8/0.000 - CDS 401833 - 403251 2024 ## COG0541 Signal recognition particle GTPase 390 188 Op 2 . - CDS 403256 - 403594 463 ## COG2739 Uncharacterized protein conserved in bacteria - Prom 403617 - 403676 4.3 391 189 Tu 1 . - CDS 403678 - 404142 511 ## COG1683 Uncharacterized conserved protein + Prom 404120 - 404179 3.1 392 190 Op 1 40/0.000 + CDS 404305 - 405015 838 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 393 190 Op 2 . + CDS 405012 - 406787 1611 ## COG0642 Signal transduction histidine kinase + Term 406793 - 406831 5.4 - Term 406770 - 406827 14.1 394 191 Op 1 . - CDS 406829 - 407719 1238 ## COG0226 ABC-type phosphate transport system, periplasmic component - Prom 407746 - 407805 9.3 395 191 Op 2 . - CDS 407830 - 409008 1553 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase - Prom 409086 - 409145 7.3 - Term 409117 - 409164 11.2 396 192 Op 1 5/0.033 - CDS 409170 - 411860 3043 ## COG0383 Alpha-mannosidase 397 192 Op 2 . - CDS 411872 - 413161 1568 ## COG3538 Uncharacterized conserved protein - Prom 413196 - 413255 11.1 + Prom 413230 - 413289 9.2 398 193 Tu 1 . + CDS 413318 - 414364 982 ## COG1609 Transcriptional regulators + Term 414561 - 414597 -0.3 - Term 414454 - 414507 7.5 399 194 Op 1 . - CDS 414553 - 415482 1031 ## COG0583 Transcriptional regulator 400 194 Op 2 . - CDS 415501 - 416199 485 ## COG3338 Carbonic anhydrase - Prom 416247 - 416306 5.2 - Term 416341 - 416392 2.1 401 195 Op 1 9/0.000 - CDS 416397 - 417029 948 ## COG0461 Orotate phosphoribosyltransferase 402 195 Op 2 5/0.033 - CDS 417031 - 417744 893 ## COG0284 Orotidine-5'-phosphate decarboxylase 403 195 Op 3 13/0.000 - CDS 417734 - 418672 1029 ## COG0167 Dihydroorotate dehydrogenase 404 195 Op 4 3/0.115 - CDS 418669 - 419460 841 ## COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases - Term 419513 - 419560 4.2 405 196 Op 1 24/0.000 - CDS 419568 - 422750 3687 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) 406 196 Op 2 7/0.000 - CDS 422750 - 423829 1033 ## COG0505 Carbamoylphosphate synthase small subunit 407 196 Op 3 15/0.000 - CDS 423832 - 425115 1575 ## COG0044 Dihydroorotase and related cyclic amidohydrolases 408 196 Op 4 6/0.033 - CDS 425124 - 426050 1034 ## COG0540 Aspartate carbamoyltransferase, catalytic chain 409 196 Op 5 7/0.000 - CDS 426064 - 427344 1065 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 410 196 Op 6 4/0.066 - CDS 427361 - 427897 918 ## COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase - Term 428017 - 428058 7.1 411 197 Op 1 15/0.000 - CDS 428239 - 429144 350 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit 412 197 Op 2 . - CDS 429131 - 429607 466 ## COG0597 Lipoprotein signal peptidase 413 197 Op 3 . - CDS 429613 - 430317 878 ## EF1724 CBS domain-containing protein - Prom 430349 - 430408 4.4 414 198 Tu 1 . - CDS 430422 - 432092 2073 ## COG2759 Formyltetrahydrofolate synthetase - Prom 432139 - 432198 5.9 + Prom 432181 - 432240 6.3 415 199 Tu 1 . + CDS 432272 - 432478 261 ## COG1278 Cold shock proteins + Term 432556 - 432610 9.2 416 200 Tu 1 . - CDS 432583 - 433044 259 ## EF1727 EbsA protein - Prom 433090 - 433149 6.2 + Prom 432978 - 433037 7.2 417 201 Tu 1 . + CDS 433145 - 433552 518 ## COG0328 Ribonuclease HI - Term 433587 - 433634 11.1 418 202 Op 1 . - CDS 433682 - 434176 638 ## COG2606 Uncharacterized conserved protein 419 202 Op 2 . - CDS 434194 - 434994 526 ## COG0710 3-dehydroquinate dehydratase - Prom 435014 - 435073 3.9 - Term 435027 - 435075 7.0 420 203 Op 1 35/0.000 - CDS 435111 - 436895 193 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 421 203 Op 2 . - CDS 436895 - 438646 209 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 - Prom 438746 - 438805 3.6 - Term 438767 - 438815 7.0 422 204 Tu 1 . - CDS 438844 - 439062 377 ## COG3763 Uncharacterized protein conserved in bacteria - Prom 439098 - 439157 8.0 - Term 439201 - 439246 7.2 423 205 Op 1 . - CDS 439256 - 440149 1291 ## COG0648 Endonuclease IV 424 205 Op 2 . - CDS 440160 - 440627 358 ## EF1737 hypothetical protein 425 205 Op 3 . - CDS 440627 - 441289 624 ## EF1738 hypothetical protein - Prom 441312 - 441371 6.1 426 206 Tu 1 . - CDS 441470 - 442732 727 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 + Prom 442856 - 442915 8.3 427 207 Op 1 . + CDS 442944 - 443951 1007 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) 428 207 Op 2 . + CDS 444073 - 445314 1114 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) + Term 445351 - 445418 25.1 - Term 445346 - 445397 13.1 429 208 Op 1 . - CDS 445500 - 446600 557 ## gi|229549839|ref|ZP_04438564.1| ABC superfamily ATP binding cassette, membrane protein 430 208 Op 2 . - CDS 446593 - 447285 202 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 - Prom 447354 - 447413 4.2 - Term 447388 - 447454 16.8 431 209 Tu 1 . - CDS 447474 - 448475 1363 ## COG1609 Transcriptional regulators - Prom 448539 - 448598 5.8 + Prom 448440 - 448499 7.5 432 210 Tu 1 . + CDS 448690 - 449793 1378 ## COG0006 Xaa-Pro aminopeptidase + Term 449802 - 449859 17.2 - Term 449791 - 449843 17.4 433 211 Op 1 3/0.115 - CDS 449914 - 450501 1124 ## COG4980 Gas vesicle protein 434 211 Op 2 . - CDS 450517 - 450948 607 ## COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain - Prom 450979 - 451038 7.2 - Term 451064 - 451118 7.3 435 212 Op 1 3/0.115 - CDS 451126 - 452022 1348 ## COG1210 UDP-glucose pyrophosphorylase 436 212 Op 2 . - CDS 452034 - 453056 1401 ## COG0240 Glycerol-3-phosphate dehydrogenase 437 212 Op 3 10/0.000 - CDS 453125 - 453961 924 ## COG0682 Prolipoprotein diacylglyceryltransferase 438 212 Op 4 . - CDS 453976 - 454911 1027 ## COG1493 Serine kinase of the HPr protein, regulates carbohydrate metabolism - Prom 454978 - 455037 5.7 + Prom 455035 - 455094 6.4 439 213 Tu 1 . + CDS 455121 - 456083 921 ## COG0322 Nuclease subunit of the excinuclease complex - Term 456065 - 456113 11.1 440 214 Op 1 . - CDS 456118 - 456474 311 ## EF1751 hypothetical protein 441 214 Op 2 4/0.066 - CDS 456474 - 456797 424 ## COG1983 Putative stress-responsive transcriptional regulator - Term 456809 - 456864 8.5 442 214 Op 3 . - CDS 456872 - 458473 2294 ## COG3595 Uncharacterized conserved protein - Prom 458607 - 458666 4.7 - Term 458596 - 458633 -0.8 443 215 Op 1 32/0.000 - CDS 458682 - 459359 829 ## COG0704 Phosphate uptake regulator 444 215 Op 2 7/0.000 - CDS 459374 - 460150 284 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 445 215 Op 3 41/0.000 - CDS 460143 - 460952 306 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 446 215 Op 4 38/0.000 - CDS 460969 - 461853 940 ## COG0581 ABC-type phosphate transport system, permease component 447 215 Op 5 39/0.000 - CDS 461853 - 462773 1128 ## COG0573 ABC-type phosphate transport system, permease component - Prom 462810 - 462869 4.3 448 215 Op 6 . - CDS 462896 - 463750 1185 ## COG0226 ABC-type phosphate transport system, periplasmic component - Prom 463809 - 463868 10.3 - Term 463876 - 463924 16.7 449 216 Op 1 28/0.000 - CDS 463926 - 464810 975 ## COG2177 Cell division protein 450 216 Op 2 4/0.066 - CDS 464803 - 465489 357 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) - Prom 465520 - 465579 8.8 451 217 Tu 1 . - CDS 465595 - 466578 1086 ## COG1186 Protein chain release factor B - Prom 466711 - 466770 4.6 - Term 466719 - 466760 6.4 452 218 Op 1 7/0.000 - CDS 466773 - 469310 3142 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) - Prom 469381 - 469440 6.6 - Term 469512 - 469553 8.9 453 218 Op 2 6/0.033 - CDS 469566 - 470117 669 ## PROTEIN SUPPORTED gi|116333275|ref|YP_794802.1| ribosome-associated protein Y (PSrp-1) - Prom 470185 - 470244 4.5 - Term 470135 - 470180 3.1 454 219 Op 1 6/0.033 - CDS 470256 - 470891 310 ## COG1040 Predicted amidophosphoribosyltransferases 455 219 Op 2 . - CDS 470932 - 472248 680 ## COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) - Prom 472412 - 472471 7.1 + Prom 472219 - 472278 5.8 456 220 Tu 1 . + CDS 472520 - 473236 450 ## COG3910 Predicted ATPase - Term 473508 - 473557 13.3 457 221 Tu 1 . - CDS 473561 - 473896 504 ## COG1440 Phosphotransferase system cellobiose-specific component IIB - Prom 473947 - 474006 6.1 458 222 Tu 1 . - CDS 474017 - 474304 339 ## EF1770 hypothetical protein + Prom 474252 - 474311 6.5 459 223 Op 1 . + CDS 474374 - 475108 736 ## COG1739 Uncharacterized conserved protein 460 223 Op 2 . + CDS 475098 - 475331 450 ## EF1772 hypothetical protein 461 223 Op 3 1/0.311 + CDS 475415 - 476179 235 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 + Prom 476230 - 476289 1.6 462 224 Tu 1 . + CDS 476325 - 476846 498 ## COG4708 Predicted membrane protein + Term 476882 - 476919 5.3 463 225 Op 1 . - CDS 476917 - 477651 526 ## EF1775 hypothetical protein 464 225 Op 2 . - CDS 477672 - 478001 349 ## EF1776 hypothetical protein - Prom 478036 - 478095 8.8 - Term 478067 - 478114 4.2 465 226 Op 1 17/0.000 - CDS 478129 - 479376 1437 ## COG0151 Phosphoribosylamine-glycine ligase 466 226 Op 2 10/0.000 - CDS 479395 - 480936 1668 ## COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) 467 226 Op 3 21/0.000 - CDS 480933 - 481505 241 ## COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN 468 226 Op 4 13/0.000 - CDS 481502 - 482533 759 ## PROTEIN SUPPORTED gi|149378138|ref|ZP_01895857.1| Ribosomal protein S7 469 226 Op 5 10/0.000 - CDS 482535 - 483974 1326 ## COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase 470 226 Op 6 9/0.000 - CDS 483950 - 486169 2219 ## COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain 471 226 Op 7 23/0.000 - CDS 486166 - 486840 580 ## COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain 472 226 Op 8 15/0.000 - CDS 486841 - 487092 376 ## COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component 473 226 Op 9 1/0.311 - CDS 487106 - 487819 653 ## COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase - Prom 487900 - 487959 7.2 - Term 487937 - 487965 -0.0 474 227 Op 1 29/0.000 - CDS 487971 - 489095 927 ## COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) 475 227 Op 2 . - CDS 489088 - 489576 555 ## COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase - Prom 489605 - 489664 8.7 - Term 489688 - 489720 2.5 476 228 Tu 1 . - CDS 489752 - 490618 1103 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs - Prom 490647 - 490706 4.5 + Prom 490506 - 490565 9.1 477 229 Tu 1 . + CDS 490768 - 491643 332 ## PROTEIN SUPPORTED gi|90022317|ref|YP_528144.1| ribosomal protein S15 + Term 491696 - 491745 11.5 - Term 491675 - 491737 13.1 478 230 Op 1 . - CDS 491741 - 493381 1756 ## COG4166 ABC-type oligopeptide transport system, periplasmic component 479 230 Op 2 . - CDS 493445 - 493765 486 ## EF1792 hypothetical protein - Prom 493794 - 493853 6.0 480 231 Tu 1 . - CDS 493900 - 494919 1065 ## COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase - Prom 494959 - 495018 6.6 481 232 Tu 1 . - CDS 495119 - 495571 712 ## COG4876 Uncharacterized protein conserved in bacteria - Prom 495597 - 495656 5.1 + Prom 495706 - 495765 6.8 482 233 Tu 1 . + CDS 495792 - 496361 712 ## EF1796 putative lipoprotein + Term 496387 - 496445 8.6 483 234 Tu 1 . - CDS 496408 - 497052 624 ## EF1797 hypothetical protein - Prom 497081 - 497140 4.1 - Term 497129 - 497165 3.4 484 235 Tu 1 . - CDS 497173 - 498327 989 ## COG0628 Predicted permease - Prom 498429 - 498488 4.6 - Term 498497 - 498551 13.2 485 236 Tu 1 . - CDS 498567 - 502541 4074 ## EF1800 hypothetical protein - Prom 502574 - 502633 5.4 - Term 502586 - 502637 13.2 486 237 Op 1 4/0.066 - CDS 502691 - 503098 570 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 487 237 Op 2 13/0.000 - CDS 503118 - 503927 985 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 488 237 Op 3 13/0.000 - CDS 503914 - 504813 1222 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 489 237 Op 4 1/0.311 - CDS 504827 - 505306 560 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 490 237 Op 5 . - CDS 505303 - 507087 1808 ## COG1874 Beta-galactosidase 491 237 Op 6 3/0.115 - CDS 507150 - 508091 872 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 492 237 Op 7 . - CDS 508107 - 509102 1283 ## COG3684 Tagatose-1,6-bisphosphate aldolase 493 237 Op 8 7/0.000 - CDS 509125 - 510297 1371 ## COG2222 Predicted phosphosugar isomerases 494 237 Op 9 . - CDS 510309 - 511040 573 ## COG2188 Transcriptional regulators - Prom 511235 - 511294 9.4 - Term 511268 - 511323 17.1 495 238 Op 1 . - CDS 511362 - 511493 62 ## gi|315036698|gb|EFT48630.1| hypothetical protein HMPREF9501_00532 496 238 Op 2 5/0.033 - CDS 511426 - 512328 770 ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases 497 238 Op 3 . - CDS 512318 - 513163 859 ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases - Prom 513257 - 513316 11.6 - Term 513547 - 513601 -0.7 498 239 Tu 1 . - CDS 513664 - 515475 1645 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Predicted protein(s) >gi|307679014|gb|GL456783.1| GENE 1 437 - 895 595 152 aa, chain + ## HITS:1 COG:lin1603 KEGG:ns NR:ns ## COG: lin1603 COG2707 # Protein_GI_number: 16800671 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 2 142 4 144 153 113 56.0 1e-25 MESWLFLLLIALIAFVAKNQSLLIASVVVLALKALPNSAKIMSWLSDKGINLGVTIISIT ILVPIATGQIGLKDLIQSFKTPMGWLGILCGILVAVLSSKGVGLINQSPEITVALVFGTI LGVVFLKGIAAGPIIASGMMYVIITTFQAFQH >gi|307679014|gb|GL456783.1| GENE 2 934 - 1275 437 113 aa, chain - ## HITS:1 COG:no KEGG:EF1247 NR:ns ## KEGG: EF1247 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 113 1 113 113 221 99.0 1e-56 MSLTISEEVKQRLAPFLTETNTFLLVANDGSNPYSSAEGCCMIGDRFIIVPVDQAEAPYT KTIANDSFHVYTSTYDQMFLTGHLQLVIHPNAGTITLKNESGILDSNVDIYQH >gi|307679014|gb|GL456783.1| GENE 3 1349 - 1612 464 87 aa, chain - ## HITS:1 COG:no KEGG:EF1248 NR:ns ## KEGG: EF1248 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 87 1 87 87 111 100.0 1e-23 MVFLHIIFGMFAFIGALGLGVAFRDSFTELSTPKKAAIILSYVGAIGSTVLGFTSATKNP FVLAATVVLVVAFSIALFKKSSKETSK >gi|307679014|gb|GL456783.1| GENE 4 1768 - 3480 1849 570 aa, chain - ## HITS:1 COG:SP0966 KEGG:ns NR:ns ## COG: SP0966 COG1293 # Protein_GI_number: 15900843 # Func_class: K Transcription # Function: Predicted RNA-binding protein homologous to eukaryotic snRNP # Organism: Streptococcus pneumoniae TIGR4 # 1 565 1 551 551 510 50.0 1e-144 MSFDGVFTHSMVHELTETLVSGRISKIHQPYENEVVLVIRAKGKNHKLLLSAHPSYARIQ LSTITYSNPETPPNFVMMLRKFLDGAILETIQQIENDRVIHFTFSKRDELGDLQNIVLIV ELMGRHSTIVLVNQSSGKILDAIKHIGMSQNSYRSLLPGATYIEPPKPMGLNPLTAAKEE VFALLSTAPELNGRYLQQHFQGLGKDTADELSARLLAQPNEKMAIWTEFWSSVTEAVVPT LTVTEKKEYFTPIPYQSLVGEQTTYATLSELLDAFYSGKAEKDRVKQQGGELIRKIENEL KRNQKKLKKLQQTLADTENAENYRRDGELLTTFMAQVPKGATEVELPNYYEENAPLRISL NPALSPNQNAQKYFQKYQKLKNAVRVVKTQIQQTQQEISYLESVVAQLEIATPMDIEVIR EELIEQGYLKRKKNKKQKQPKKSQPDLFYATDSTPILVGKNNLQNDQLTLRTAKKTDYWL HAKDIPGSHVIIRDAHPSEETLTEAALLAAYFSKYRLSSQVPVDYVQVKHVHKPNGAKPG YVIYENQRTLYVTPTEESIKKIQQNKASAS >gi|307679014|gb|GL456783.1| GENE 5 3700 - 4359 668 219 aa, chain + ## HITS:1 COG:no KEGG:EF1250 NR:ns ## KEGG: EF1250 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 219 5 223 223 321 100.0 1e-86 MEELKEALYELRQRKLLMITAIVALVLIIGSIIFIPTMQKNIRAAQVESLVAGPIKSEKV SVLDYKTADKKIQETGAMSVMFAKPSGKQYDQMVKLFNSDKMNEFHRSLYIYPLIYNAGK AQEQYNVSGDEITLVFFENGKEKTRTVVEKSMDLKTQLIPELNRLPMAGVLKDQQKAAQE AEKEAAKTAETQTTTSTTGVAQSTETTTESTDTVPETGE >gi|307679014|gb|GL456783.1| GENE 6 4423 - 4530 132 35 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MALVISMTILVSLWLIQSQKQAVKVPVKIERNRNN >gi|307679014|gb|GL456783.1| GENE 7 5440 - 6429 1127 329 aa, chain + ## HITS:1 COG:SP1069 KEGG:ns NR:ns ## COG: SP1069 COG2984 # Protein_GI_number: 15900938 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 1 325 11 339 344 294 52.0 1e-79 MKNKRLTFVVSLLAIYLIGAFFVNQKVTNSKKETVTVGVLQFVSHPALDEIYKGVEEGLK ENGYDKGKNLEIIFQNGQADQSKLAIMSQQLVQKKADVLIGIATPAAQALANTTQEIPII LGAITDPVSAGLVKDNQKPGGNITGVSDQSPLSAQMDLLKELIPAAKKIGILYASSEENS RYQVAEVQKAAEAKGLTVKTYAVPSSNEIAQTVQVMTKETDVIYIPTDNTIANAMQTVVG EANRTKTPIIPSVDTMVEQGGLATVGINQYALGVQAGKMAAEVLSGKSQPATTPIYTFNT GDTIINEKQAQKLGITIPAELAKKSKLIN >gi|307679014|gb|GL456783.1| GENE 8 6454 - 7341 1159 295 aa, chain + ## HITS:1 COG:SP1070 KEGG:ns NR:ns ## COG: SP1070 COG4120 # Protein_GI_number: 15900939 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 283 1 280 288 294 62.0 1e-79 MIVSAIGQGMLWALLGLGIFMTYRILNFPDMTTEGSFPLGGAVCVTAITTGVSPFVATLL GVGAGMLAGLVTGLLFTKGKIPIILAGILVMSGLNSVILFVMKSPNKSLLNQPKIQDVFQ KMALPDYYDTIFLGISVLAVVMILLLFFFNTSLGQAYIATGDNEEMARSIGIQTDRMKIL GLVLSNGLIGLSGALIAQNDGYADVSKGTGVIVIGLASLIIGEVLFGELTFGERLMAIVV GSIIYQLLILLVIKLGFDTTYLKIFSAVILAICLMIPQLKKALRLHGFSDKGETK >gi|307679014|gb|GL456783.1| GENE 9 7338 - 8105 209 255 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 25 238 38 248 329 85 29 4e-15 MKPVVELKNATKIIDNGMNEKKVILDHVNLAIYPGDFITVLGGNGAGKSTLFNSLAGTLT LTEGQFLIEGVNRTNLSEVKRAKSLARVFQDPKMGTAPRMTVAENLLLAMKRGQKRPLTL RKINEQRALFTKICQEVGNGLENHLDTPTGNLSGGQRQALSLLMATITKPELLLLDEHTA ALDPKTSKQLMHLTEQRIEEGNLTCLMITHRMEDALRYGNRLIVLQKGKIVQDLNAAEKA QLTLQDLLLFFEEVE >gi|307679014|gb|GL456783.1| GENE 10 8137 - 8598 538 153 aa, chain - ## HITS:1 COG:lin0586 KEGG:ns NR:ns ## COG: lin0586 COG3610 # Protein_GI_number: 16799661 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 3 142 7 145 152 121 45.0 4e-28 MELIFHLLFSFLATVTFGIITNIPRKALVACGITGMTGWMIYYVLTQTFDASQTFANFLG TVGLGIASIFFSRYKKMPMIIFYIPSLVPLVPGGPAYQAVRSILLGNIDDGLQLILKVVF TAAAIAAGFMVTSLLERIVKRFFPKRLFRLVKK >gi|307679014|gb|GL456783.1| GENE 11 8610 - 9386 652 258 aa, chain - ## HITS:1 COG:lin0587 KEGG:ns NR:ns ## COG: lin0587 COG2966 # Protein_GI_number: 16799662 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 10 258 2 250 250 234 48.0 1e-61 MKGAIPLVNSEKRKQLIIDTCILAGKIMLESGSEVYRTEDTITRIATNAGEPESVCYTTA TGIFVGFRSSNYTQLENIPQRSINLEKVSLVNQLSREFAQKEITLPELYQRLTLLETDTP TFSISLRLLAAGIVSCTLMYIFGGTWQDFIATFFVGVIGYASYLFTQKLFQVPYLDSFAA AFVIGLLAYLAVHFHLAVNIDNIIIGAVMPLVPGVAITNSFRDILAGHLISGTARGTEAI FIAGSVGLGIALIFKLFM >gi|307679014|gb|GL456783.1| GENE 12 9618 - 9824 229 68 aa, chain + ## HITS:1 COG:no KEGG:EF1258 NR:ns ## KEGG: EF1258 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 68 1 68 68 111 100.0 8e-24 MDNQWLLYGISSVVLIILIRRTILSGNIVLSCLLGAILLIQVVGVALCAQQKKKNEHTKE LPSSKVHQ >gi|307679014|gb|GL456783.1| GENE 13 9842 - 10621 1015 259 aa, chain - ## HITS:1 COG:lin2311 KEGG:ns NR:ns ## COG: lin2311 COG0561 # Protein_GI_number: 16801375 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 3 259 2 256 256 238 46.0 7e-63 MDKMKAITFFDLDGTLLDGTSQITPEITAAVAALKDNQILPLIATGRTLCEIQPIMKASG IDSAIVMNGQFIHYEGKTIYSDEFTTEECVSLHEHVKQRGHELAFYNERRIFCTGHTGTV KQAYDYIHSAVPEIDPTGYENDAVNMMLVLSQHGDDDEYYYERFPELTFYRNGPFSIDIV RKGVSKGSGVKNLFNTLGLTGIPTYAFGDGINDLALFEACDYGIAMGNAREELKEKATFI STKNTENGIVNGLKKFDLL >gi|307679014|gb|GL456783.1| GENE 14 10836 - 11555 911 239 aa, chain + ## HITS:1 COG:BS_yclJ KEGG:ns NR:ns ## COG: BS_yclJ COG0745 # Protein_GI_number: 16077443 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus subtilis # 1 235 1 226 227 267 60.0 1e-71 MNILMIEDNESVSEMMQMFFLNEGWEATFKDDGKEGLATFLASPEKWDMITLDLNLPSMD GMAVCREIRKVSANVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALHRR AEVAEAAHDTSENTDETFDVITDHFKMNTKTRETYLDNQLIEGLTPKEFDLLYTLAKKPR QVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEKVGPQVIQTVWGVGYKFDDSGVA >gi|307679014|gb|GL456783.1| GENE 15 11555 - 13024 1518 489 aa, chain + ## HITS:1 COG:BS_yclK KEGG:ns NR:ns ## COG: BS_yclK COG0642 # Protein_GI_number: 16077444 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 1 482 4 467 473 326 40.0 8e-89 MKYLYQQLLAFIGVIALIILIVGTSFTQLTKRTMQENNYEQLYGYAESALETRDFFINVA GVSDRDVLSYSFQLTERVLQKQDVQFVFINKDREVQYPPVDSTKKLDFSLIDKNWDQIMK GNRVYATENIDIYGARNTSSYVMLPVYASNQSSDKKVIIGSLVITQPAKNVDRSVQSVTQ NLIKGFIFSGVIALLLSYLFATFQVKRINRMRKATKEITSGNFDIQLPVHDKDEFDDLAE DFNKMAASLKESQEEINRQEERRRQFMADASHEMRTPLTTINGLLEGLQYNAIPENQKEN AIKLMQNETARLIRLVNENLDYEKIRTNQIQIVVKKFNGTEALENIVTQLTAKAEAAGNQ LYLDTTEPIDVYADYDRFVQVVVNIVQNAIQFTENGEIHIALEKGYLETIVRISDTGIGM TEEQILNIWDRYYKVDPSRKNTKYGESGLGLPIVQQLVRLHKGKINVESELGKGTTFIIS FPDVEITEN >gi|307679014|gb|GL456783.1| GENE 16 13062 - 13550 401 162 aa, chain - ## HITS:1 COG:no KEGG:EF1262 NR:ns ## KEGG: EF1262 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 162 22 183 183 273 98.0 2e-72 MREVYGIIYSAPEQELALADVFQTNQLTITRLSSSETFLPYLPLEENLFIASTIKERDRK VVLAEAFQVFQLEPALLGRSFTSFTTFEKIKMRIIQLLLSKTSTLVIDDIFSSLTIGQRQ EILPQLKIAVQKRNKRLLFLTKDPQIIDSPYVHPLSLHALLN >gi|307679014|gb|GL456783.1| GENE 17 13627 - 14328 442 233 aa, chain - ## HITS:1 COG:no KEGG:EF1263 NR:ns ## KEGG: EF1263 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 233 1 233 233 363 99.0 4e-99 MRSVRYATASSFYHKKITLITALFFFLFSFLLTGLFNLIDFEKEFLRTMPDFVDIEKQTS YHYQLIQYYWHLYLGSVIFFGVTFLLLMYVTLRIKKEEIHTWYHMHFSNMYVTKQLLLEL CLPALLGIFSFLLFTLMFQETYNTVLWAARDAILQWSHLETPAFLAKSTDQDVTITNIQH LGIQTIQAFSFDFKSMQSLYTIRNCFVNCLILLGIPLVCGTPFTLIYLRTHQK >gi|307679014|gb|GL456783.1| GENE 18 14434 - 16542 2302 702 aa, chain - ## HITS:1 COG:SPy0807 KEGG:ns NR:ns ## COG: SPy0807 COG1368 # Protein_GI_number: 15674849 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Streptococcus pyogenes M1 GAS # 3 694 18 712 736 735 55.0 0 MKKLFKTNILNTRLGLFSLIAILLWLKNLFAYAVDFHLRLENINEYFILLINPIATTVFL LAIALYVRRKKASYITMMIIYFLMSLLLFSNVVYYREFTDFITVNTMLGAGKVASGLGES ALRLFRPYDVIYFLDFIIIGVLLLTKKIKTDARPVRARVAVSVTLLSVVFFLFNLFMAET ERPQLLGRQFSRDYIVKFLGLNAFTVYDGITTYQTNQVRAEASANDMKQVEDYVKQQYAA PDDSKFGIAKGKNVIYIHLESFQQFLVNYKLKDENGVEHEVTPFINSLYNSKSTFSFDNF FHQVGQGKTSDAETLLENSLFGLDQGSLFTQVGGKNTFEAAPDILKQTQGYTSAAFHGNA GNFWNRNETYKRLGYDYFFDASYYDVNSDNSFQYGLHDKPFFNQSVQYLEHLQQPFYSKF IAVSNHYPYSQFTNDEAGFPIAKTSDETINGYFATANYLDKAVEEFFNYLKSSGLYENSV IVLYGDHYGVSNSRNQNLAELVGKTKADWNDFDNANMQRVPYMIHVPGQENGGVNHTYGG QVDALPTLLHLLGVDTKNYIQLGQDLFSKQHNQIVAFRNGNVVTPKYTILGSSIYDTKTG TLITEPTEEVKKEVADLKAKATKQLETSDQITNGDLLRFYTNSGLKPVNPEDYDYKNQLQ QLEAIEKEKGEKSTSVYSKNNNKSTVDEYHTDSYQGYQKTGK >gi|307679014|gb|GL456783.1| GENE 19 16800 - 17972 1257 390 aa, chain + ## HITS:1 COG:L52686 KEGG:ns NR:ns ## COG: L52686 COG1092 # Protein_GI_number: 15672238 # Func_class: R General function prediction only # Function: Predicted SAM-dependent methyltransferases # Organism: Lactococcus lactis # 2 390 3 389 389 441 59.0 1e-123 MKLQVTKKAEHKFKKGYPLIQKEDLQQVPAPLPTDWLTLIDSKGQRLAEGYLGEQNKGIG WLLSWHGPINQSFFQQLFEISREKRTSFEKDSLTTAYRLFNGEGDGIGGVIIDRYADYAV FSWYNETLYQKKAELLTAFRTVYPDIIGAYEKIRFSTKDLPESQFLYGEQAPEPLLVTEN GVQFATYLNEGLMTGIFLDQKEVRGRLVDGFAVGKTVLNMFSYTGAFSVAAAMGGAVATT SVDLAKRSLPKTTEQFEVNHLNLAPQKIIVMDVFDYFKYASRKGLSYDMIILDPPSFARN KKKVFSVAKNYGELVKDSIDILTDKGTLIASTNAANLSLAKYQKMVITALQEKNVRYKIT DTYQLPADFQVNPNFPEGNYLKVLFIEIEK >gi|307679014|gb|GL456783.1| GENE 20 18039 - 18956 829 305 aa, chain - ## HITS:1 COG:lin1191 KEGG:ns NR:ns ## COG: lin1191 COG1039 # Protein_GI_number: 16800260 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HIII # Organism: Listeria innocua # 4 304 3 305 308 252 47.0 5e-67 MAQNHVIKVSKKTLAEMTTVYQPNRLNKTVPYTVFVAKVGTTTITAYQSGKVMFQGPQAE KEAARWEGTSTTPKKKISPQTTTLPADFGNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMI SKLKALGVRDSKELTDPQIIQLSHVIKELIPYKLLIVEPKKYNEIQPNYNAVHMKVALHN QAIYLLLQELAPTKPEGILIDQFTPEKNYRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAA SIISRAAFLEELDKESAELGFSVPSGAGSKSDQVAARILKKGGLDLLANYAKLHFANTQK AQKLL >gi|307679014|gb|GL456783.1| GENE 21 19199 - 21595 2271 798 aa, chain + ## HITS:1 COG:L168650 KEGG:ns NR:ns ## COG: L168650 COG0474 # Protein_GI_number: 15672557 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 22 788 4 772 775 717 50.0 0 MQENEPIAVTANAERYYPEDKQGLTAAQVEERQRKGLVNAAVDTEFITTKQIVINNVFTY FNLIFVVLGVLLMLVQSYKNMTFLPVVIINTVIGIYQEIKSKKVLDSLNILNATKVTVVR DGQEQEISPDELVLDDVVLFKSGEQISGDAIVLSGEVRVNESLLTGESDEITKVADSQLL SGSFIVSGSCYARIDKIGAEAYVHQLTLEAKSIKKGEQSEMVGSINRLVKWVGIIIIPIG CVLFFQSYFINHQGLHDSIVSMEAALIGMIPEGLYLLTTVALAASTMRLAKRGVLLHNMK SIESLARVDVLCVDKTGTITENTMEVQELVPVVSIENDGTDLTNVEKLIGDFCRTMSADN DTMKAMKEFFVTNNQREAVSYTSFSSVEKFSSVTFPEATYILGAPEMILRDNYEMYQSEV EHYTSQGYRLLVFGKYLGEFQETLAAEVQPLGYILLWNPIRKEAKATFEYFAEQNVAIKV ISGDNPLTVSNVAQAAGIIGAENYVDARTLTTMEAQTEALEKYTVFGRVTPEQKKQFVLL LKKLDHTVAMTGDGVNDILAMKEADCSIAMASGNQATAQASQVVLLDSDFSTMPEVVFEG RQVVNNIERSSSLFLVKNIFSLLMSVFAMIFAVTYPLQPTQVTLISLFTIGIPSTFLALE PNHRRIEGKFLFNVLSKAIPGGLTDMLVVGALLICGDILALQKTDISTTATLLLVSVGFM VLYKISSPMNRYRKRVMIGCLIGMVITSISMKNLFSLTSVSPTALLLLAILFFAADSTFQ HLSTISEKVQLWFYKKRH >gi|307679014|gb|GL456783.1| GENE 22 21737 - 23623 1659 628 aa, chain + ## HITS:1 COG:lin0203 KEGG:ns NR:ns ## COG: lin0203 COG4932 # Protein_GI_number: 16799280 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Listeria innocua # 58 603 43 562 586 129 27.0 2e-29 MKKRSFVYWGMFFILLSTLITPFLKLETGYAQTEPTSTSETNQISATPNVVPRKQVGNIV TAIQLTDKEGNPLGTINQYTDIYLRIEFNLPDNTVNSGDTSVITLPEELRLEKNMTFNVV DDTGAVVAIAQTDVANKTVTLTYTDYVENHANISGSLYFTSLIDFENVENESKIPIYVTV EGEKIFAGDLDYQGEGDDVNEKFSKYSWFIEDDPTEIYNVLRINPTGQTYTDLEVEDVLK TASLSYMKDTMKIERGQWTLDGNAIWQFTPEEDITGQLAVQYGPDDRNFSVHFGNIGTNE YRITYKTKSDHLPEKGETFTNYAKLTENQTVVEEVEVSRVSQTGGGEANGEQYVVEIHKE DEAGQRLAGAEFKLIRNSTNQTVAKITTDQNGTAIVKGLLKDNYTLEETKAPTGYQLSQN KISITPEDFGKNLVALKTVVNHKISYQPVAASFLAGKVLLGKPLKDAEFQFELLDEKGTV LETVSNDTLGKIQFSPLTFETPGNYQYTIREVNTRQAGVSYDTHNLQVQVTVEALLGNLV ATTQYDGGQVFTNHYTPEKPIESTTPPTSGTTDTTTNSTTETTSITIEKQAIRNKELPKT GETKENAFLFLGSLLLIQGLFIYFKTKK >gi|307679014|gb|GL456783.1| GENE 23 23829 - 24302 614 157 aa, chain + ## HITS:1 COG:lin1358 KEGG:ns NR:ns ## COG: lin1358 COG0779 # Protein_GI_number: 16800426 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 157 1 155 155 172 57.0 2e-43 MSSAVETVTKLVTPILEEQNFELVEVEFVKEGKNWFLRVFIDKEGGIDIEECAFVSEKLS EKLDAMDPDPIPQAYFLEVSSPGAERPLKKESDYEQAVGKYIHISLYQAVDGEKQIEGTL VHLDSEQLTLSVKIKTRVKEMTFERKNIAKARLAIQF >gi|307679014|gb|GL456783.1| GENE 24 24446 - 25645 787 399 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis 16M] # 4 372 9 372 537 307 44 4e-82 MSKEMLNALDVLEAEKGIPKDTVIEALQAALVSAYKRHYGQASNVEVEFEPKKGNIHVYA VKEVTEEVFDSQLEVSLKDAVALNGAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVRE AERTIIYNEFSEYENDIMQGIVERQDRRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKV YVSRVENTSKGPQVFVSRSHPDLLKRLFEQEIPEVYDGIVEIVSVAREAGDRSKVAVRST DPNIDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIYISNALNPAQVLDVIFDPE NSKACTVVVPDYQLSLAIGKRGQNARLAAKLTGHKIDIKSESDMAEFYEQQANQEVAEVA EEMDEAIIHSDMTADDYENLAAEEAVVEAEITEELPEQE >gi|307679014|gb|GL456783.1| GENE 25 25666 - 25965 495 99 aa, chain + ## HITS:1 COG:L175136 KEGG:ns NR:ns ## COG: L175136 COG2740 # Protein_GI_number: 15672747 # Func_class: K Transcription # Function: Predicted nucleic-acid-binding protein implicated in transcription termination # Organism: Lactococcus lactis # 1 94 1 94 108 96 53.0 1e-20 MKKRKIPMRKSVVSGEMKPKKELVRITRSKEGEVALDPTGKLPGRGAYVDLDPAEVQKAW DKKILDRVLETKLSDEFYQELLDYVTHQKARKELFGDGK >gi|307679014|gb|GL456783.1| GENE 26 25955 - 26260 495 101 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375842|ref|NP_814996.1| ribosomal protein L7A family protein [Enterococcus faecalis V583] # 1 101 1 101 101 195 100 3e-48 MENKTKILNLLGLAMRAGKLVTGEELTLKDIRANKAKFVFVAQDASENTRKKIKDKSSYY NVPVSELFSQFELSQAIGRPRMVIGVTDAGFATKIKELLKG >gi|307679014|gb|GL456783.1| GENE 27 26273 - 28669 2687 798 aa, chain + ## HITS:1 COG:lin1362 KEGG:ns NR:ns ## COG: lin1362 COG0532 # Protein_GI_number: 16800430 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 2 (IF-2; GTPase) # Organism: Listeria innocua # 1 798 1 781 782 843 59.0 0 MGKKRIYELAKEMNKASKDVVDKAHQLGMDVKNHMGAISSEQETKLRQAFGGGSTVNTQS KATNNQKQQTTQKKPANKKPMNNKPGEQRNNQNRPNNQSTNGQQRNNNNQNRHGQSNTQN RSNQTNTNNQNRNTQNNNGSTTNQNRTSQNNNGGNNQNRGGQNRNNNFGGGQNRNNRNNF NNQNRNRFNKKGKKGKHQQESAKPAVPARKFRELPDVLEYTEGMNVADIAKKIHREPAEI IKKLFMMGVMVNQNQALDKDTIELLAVDYGMEPQEKVQVDIADIDKFFEPEAVVEENLTT RPPVVTIMGHVDHGKTTLLDTLRHSRVTSGEAGGITQHIGAYQLDIDGKPITFLDTPGHA AFTSMRARGASITDITILVVAADDGVMPQTIEAINHAKAAKVPIIVAVNKIDKPGANPDH VKQELSEHELIPEEWGGDTIFVNISAKFNQNIDELLENILLIAEVEDLKADPTQKAIGTV IEARLDKGKGPVATLLVQQGTLHVGDPIVVGNTYGRVRVMTNDMGRRDKEAGPATPVEIT GLNDVPQAGDRFVVFEDEKTARQAGEERAKRALLEQRSASSRVTLDNLFESLKEGELKEV NIIVKADVQGSAEAVSASLQKIDVEGVRVKIVHAAVGAINESDVTLAAASNAIIIGFNVR PTPQAKQQAEQEEVDIRLHRIIYKALEEIETAMKGLLDPEFEEKITGQMTVRELYKVSKV GTIAGCYVTEGFIRRDSGVRVIRDGIVIYEGKLASLKRFKDDVKEVKLGFECGAMIENFN DLRVDDAIEGFIMEEIKQ >gi|307679014|gb|GL456783.1| GENE 28 28694 - 29044 648 116 aa, chain + ## HITS:1 COG:SPy1719 KEGG:ns NR:ns ## COG: SPy1719 COG0858 # Protein_GI_number: 15675570 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-binding factor A # Organism: Streptococcus pyogenes M1 GAS # 1 113 3 115 118 134 61.0 3e-32 MANYRDRRVGQEIMREVNDFLNKRIRDPRVQGITITDVRVTGDLQQATIYYSLLSDLASE QQKAQQGLDKAKGLIRKELGQRLTLYKTPELIFERDESVQYGNHIDELIRKLNQGE >gi|307679014|gb|GL456783.1| GENE 29 29127 - 29357 104 76 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315153236|gb|EFT97252.1| ## NR: gi|315153236|gb|EFT97252.1| hypothetical protein HMPREF9502_01271 [Enterococcus faecalis TX0031] hypothetical protein HMPREF9508_01975 [Enterococcus faecalis TX0312] # 1 76 1 76 76 120 100.0 4e-26 MKRIVAFYKNGDRYLKEMGSGKSSLYFFLFFFVLHSMREHIIQFIGFWPSFIFVLILVPN LMLGVGHINHWYKNRS >gi|307679014|gb|GL456783.1| GENE 30 29417 - 29890 512 157 aa, chain - ## HITS:1 COG:no KEGG:EF1276 NR:ns ## KEGG: EF1276 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 157 1 157 157 283 100.0 2e-75 MNDYEKLVSSIQKDVTVLEIDLYNQTGCYGLYRNGKIYIEKTLSTRQKKNILAEEYGHYQ TSVGTILNQNCTENRKQELKARNVALEQLVTLDDLIRCSEAGLSNHYSCAEFLEIDVETL KNVITYYRQKYGATYLYKGRIFEFRDYSVMVLNTGLT >gi|307679014|gb|GL456783.1| GENE 31 29937 - 30419 598 160 aa, chain - ## HITS:1 COG:FN2065 KEGG:ns NR:ns ## COG: FN2065 COG1396 # Protein_GI_number: 19705355 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Fusobacterium nucleatum # 4 78 7 79 155 59 46.0 2e-09 MNIFAIRLKEALTAKNIKPSELAKKTGIGKSSISDWLAGRYEAKQDKVYRIADALDINEA WLMGQEVPMEKNASTIDRIYKKLEPQRQAIVYQFAEQQLHEQQTQAEILSFPRRDEMTLA AHAGDPEKIFSKEEIEKIHDYLDEIDAKYQQSISSDKKED >gi|307679014|gb|GL456783.1| GENE 32 30636 - 30770 155 44 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSRNYKKTLSDMLLLAIILLISSVSIKIGAIVIGMIGLMELLTE >gi|307679014|gb|GL456783.1| GENE 33 30801 - 31571 711 256 aa, chain + ## HITS:1 COG:no KEGG:EF1279 NR:ns ## KEGG: EF1279 # Name: not_defined # Def: DNA replication protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 256 1 256 256 495 98.0 1e-139 MAERRMFAKTIIDSDAFLDMPLSSQALYFHLAMRADDDGFINNPKKLQRMVGCGEDDLKL LMVKKFILVFESGVIVIKHWKIHNYIRSDRYKPTLYQEEKNQIVEKNSKAYTFKAESSVS GQPADYQRLPQESIVQSKLGQSQGSSSENDCLKMIYHFYEENGFGTLASKTSQDFKYWLQ DFMQKGASQEEACQLILHALGIAIDRNKRNYGYVNAILKSWEQQNYLSVHEVLVNDKKQV SEHAPQMTEEYQELGF >gi|307679014|gb|GL456783.1| GENE 34 31590 - 32432 802 280 aa, chain + ## HITS:1 COG:L0312 KEGG:ns NR:ns ## COG: L0312 COG1484 # Protein_GI_number: 15673401 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Lactococcus lactis # 48 275 62 291 294 101 29.0 2e-21 MHATDQTFQILLSQLLEKVEDRCPECGSEQYVWQQKNKDGTERCAPTCWSCGYKMLKKHE QEATQQRSQESFMARTQKFFHQGSLIADDALRQCRLTNYQTTELETRQAKERALAAVSAI VEGKPIHVIFSGKPGVGKSHLAISILVEVLERSAYQKYCLFVSYSELLEKLKMSMNESAK SQAKAQAYITRMKKADVLVLDDLGAELGIKNKVSTDFNNDILNRILEGRQNKATIFTTNF SGKQLVEAYGTRIISRLMKHASGYVFQYKDTTDKRMRSVK >gi|307679014|gb|GL456783.1| GENE 35 32435 - 32527 134 30 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLTIIIGFIFWTMTLMLGYLIGEREGRKHE >gi|307679014|gb|GL456783.1| GENE 36 32520 - 32891 307 123 aa, chain + ## HITS:1 COG:no KEGG:EF1282 NR:ns ## KEGG: EF1282 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 123 1 123 123 211 98.0 9e-54 MSNLTKCKKDLFEMKSVVFKDISKQQSEKAQKRKRLLQLMNQYPDWASQKNKLIMQEIQE LGQAIGNWSMDQSRPIQSIKATSFTKSEYLYLIWLGYSDEAIRHGLDMSKECYFIYRLTL LNE >gi|307679014|gb|GL456783.1| GENE 37 32911 - 33318 535 135 aa, chain + ## HITS:1 COG:no KEGG:EF1283 NR:ns ## KEGG: EF1283 # Name: not_defined # Def: RinA family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 135 1 135 135 249 98.0 3e-65 MRTSTFNYIKDILADFYKTDEYIQQREEELRHPYQEADLNAGIRGQGLHSVVTERMAITI AMDRRLWNLERNRDIIKNCLAEADEQTRVIIEELYMKKRPSLTLIGLAQQLFISKSQAYK LRNHFFEAVADELGM >gi|307679014|gb|GL456783.1| GENE 38 33564 - 33956 423 130 aa, chain + ## HITS:1 COG:no KEGG:EF1284 NR:ns ## KEGG: EF1284 # Name: not_defined # Def: structural protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 130 1 130 130 249 100.0 3e-65 MNEAEQELYEALVAICQTSGFLLLEELPTDLPDQPFVYLGDSKELPKPTKSAILGEIELI MHVYGALSERQQISTIKGTILRQATSNLKRTAHFNWGIKHQEVKAQMVKDTKQMKKTIWH AVLPLHMQFY >gi|307679014|gb|GL456783.1| GENE 39 33969 - 34481 984 170 aa, chain + ## HITS:1 COG:no KEGG:EF1285 NR:ns ## KEGG: EF1285 # Name: not_defined # Def: major tail protein # Organism: E.faecalis # Pathway: not_defined # 1 169 1 169 170 312 100.0 3e-84 MGEVMQGKDRILLVRRLDEAATKKAMKPLFQIEHEWEFSRESSGTQTKDGVANAVSGLEV TLSLSGLASRDDENLYMKDAVEDGILMEFWDVDLKGEKNAEGKYPAIYAQGYVNSWSLPA NVEELVEIETEASINGKPQDGFATVEADIIAEAQYAFQDTVPDKAPQPGA >gi|307679014|gb|GL456783.1| GENE 40 34514 - 34873 472 119 aa, chain + ## HITS:1 COG:no KEGG:EF1286 NR:ns ## KEGG: EF1286 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 119 1 119 119 207 100.0 9e-53 MNLEINGKTIEVKFTIGAIRELDKRYQIENGAAKFGMGISSAMIYLRQYNPVILVDIMEA LQSGQLKIGKSEIEAWLMTQDVKKLSDDLLKEMGKQPLTKPMIDQFSKEAKKAEAQATN >gi|307679014|gb|GL456783.1| GENE 41 34966 - 35259 338 97 aa, chain + ## HITS:1 COG:no KEGG:EF1287 NR:ns ## KEGG: EF1287 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 97 26 122 122 137 98.0 1e-31 MSEFELRMIAFNLAEVDEERKRHELAYLNVKAQATNKKGKPVFESFKSFYDYEKRVAEVL AANQPQRTKLNEWKKTQLATVAERLRRYREGRRVDGE >gi|307679014|gb|GL456783.1| GENE 42 35249 - 38182 3654 977 aa, chain + ## HITS:1 COG:BH0012 KEGG:ns NR:ns ## COG: BH0012 COG5412 # Protein_GI_number: 15612575 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Bacillus halodurans # 610 976 137 509 509 125 28.0 4e-28 MENDKEKTPLSEAKKSLAGVQQALKSMSGEYALLSGYLGKISAGVNQSATVMNTFKTVMQ QSGETVKKTGDETAKAADQMNTALTDSAEQAGEAAKKAGKETSDGFTNAQNNMLSFGTAM TSAVSLPMLNVLKTAMGVGAGVSGEFQGMQGLIMASAGGISDSLQGELQGALTQMNQSFE AAAQVIQSVMAPGMEILVQVVITVVKGITALVNLFIKLPKPVQVFIVAIMGILAAIGPML IMVTMAQQKFQQFSDGLVLVKGNIGKLGGGLSKLSASFSALSGGPLILIVAAVLAAVAAF IYFYKTNETFRNSINSLASAIQGAVSAAFGKLVGLLQQIQPAFQQVMAVFKQFFAVGLEK MATIFSTIGRVLAGVFASGLQLGSNLLGQFGGTFDKAGLAVGLLVKVLTKVALAALGISG PFGLIISLIVSFVTAWMKTGDLSAGGITQVFDNLGNTITSVTTMLAANLPKVIQLFTTVL TSILGKITEAIPSIVTALSSLITLIVGAIVANLPVLIEAATQIITTLIQGITTVLPMLIE VGLSLLMTLVNAIVTALPTITTAAINIITTLVTAFVTALPMLVTAGVSIITALVNAFVTM LPLILTAGLQILMALITGIMTILPQLIQSALTIILALVTALIGALPQIISAGVKLLMALI QGIISILPTLVAAAITLILTLVNALIGALPQIISAGVKLLMALIQGIISILPQLVTAAIT LITALMGALINALPQLLSAGIQLIQALINGVLSLLGTLLSAAGTLISQMITKIGSYFGQL LASGGQLVENIKNGVTNAADQVKNAIGSVIEGAWQAIQGWFSKFTDAGANIVGMIADGIT GAIGKAKEAIDGVVSKIRNFLPFSPAKEGPLSDLHKLNFGGTIATGIYAGETAVSRAMAS ILDLPLLNDFALDLAGRGNFTATIDHRLENDAYNRPLFVTVESTLDGKVVAATTAPYLAT ELQRQQVKQNNRLGRRG >gi|307679014|gb|GL456783.1| GENE 43 38184 - 39110 1239 308 aa, chain + ## HITS:1 COG:no KEGG:EF1289 NR:ns ## KEGG: EF1289 # Name: not_defined # Def: tail protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 308 1 308 308 619 99.0 1e-176 MYKFVDTNQATHSTPLPSEALNFNGQFLEKVIPGYQTLSVSGRELVPSEIESYQLGIRDG KRHVYARIPERELTVKYRLSAVNNEAFRDAFNHLNVALFTEKDVSIWFNDEPEMLWFGSK SSVSDVPEGVNQVTGTFTLLLSDPYKYTRSDATSVMWGSPTITFQANYLMGNTGSGAVDF PILIEGGAYWGSTMITFQNRAYTMGDLGKEVRPIEIYPTVEGLKVKPTIILTGTGHGVWI KTRNDTINLGDFDRSEIIIDTENFYLTKNGAPMIRPMNDFYLYPNEPLYIQAKDSDFRLT IRYPNRFV >gi|307679014|gb|GL456783.1| GENE 44 39123 - 40580 1189 485 aa, chain + ## HITS:1 COG:no KEGG:EF1290 NR:ns ## KEGG: EF1290 # Name: not_defined # Def: structural protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 485 1 485 485 957 98.0 0 MLMALDLKRTYTAILDNAYQVSYEKIENKIGSLDFTMPLDDPKNEFIAEMQWVELTDNEN EYIGLYRVMPTTIKKDANNNQIHYSATEALCTLGDTVLFGCHEIKNKTTKEAIQFLLNKQ KTKHWVLKKCDFSRKLTYKWENENGLVEPLFSIPADFEEEYLWQWNTEVYPFELSLVKPP TEAVARIQEGYNMQGFEIERNPKMLINRIYPLGSGEGVNKVNIRSVNQGVPYLENKAAID RYGLLESIWVEQRFSDPKALKENALRMLEEWTKPQVSWVVTAADLIKLTDQPLAIDRLRL GTVIMINTNEFGSVNLRIKKESKKDVFGAPQDIQLELGNLQETIHSTMTAFSRKQEISET YAQGATTLLNRSIQGELNKTQPVELNLYFDEDILYVNTAELTFKATAKGPSHSVTNIDLV VDGKKLPQLSLQQQRLNILSYLRKTTDGKIERGNHTLQFFSHQPLWLDASVICRVYIQSQ LGGQF >gi|307679014|gb|GL456783.1| GENE 45 40613 - 42382 1672 589 aa, chain + ## HITS:1 COG:no KEGG:EF1291 NR:ns ## KEGG: EF1291 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 589 1 589 589 1050 98.0 0 MSVEHIEELDTLNQGRLKINAILDQSNASAEKVDAYQVQLTNGISEAKNIADEAGKEAVQ IATDAGNQANETANQAMNNAKTAITIAGNAVSTANNNKQEFDTLRNDFDQLVAEAGDSNP EIVQARTDTQGIKQATLANRLQIDLNDRMTKADGISLLAKPTTVKLKLDFNGKTAGNTAT NANSYSTDFTAKILKKPTDVWEEVSQADYNKMASRDDEGVKTGSTQSGVIPQQLAAFNLV EAAKKLIPQMFETFTTDEAVAFIRQNVQFFTINQRVKAAAPNNQTIKIAAYLPTTDNWVT QIQESAKEFGDFSIQINDQNFITDEGFIYLMSYTDSSNGVTPASLEVDYMGLHIGLSVDA QAVLAKSGFVQAEQLKTHVENQDNPHQVTAEQVGLGNVENYGFASDSEAVAGTLTSKYMH PKNVAEAIKGQAVTQTGDQEIAGVKNFVTMPTVNGLPLESSRMAIYEASGVGEVEAKYQA AFNKDNMKFVLIRVGNRVDAFVRCNLSDPTKLNNNVVKVFTVPTGYTLSTKITKGIWNLA LTAMQYTFPQPNCAGLYEMGNQGILFGANRAGNIYLQGSWYTDDPFPTK >gi|307679014|gb|GL456783.1| GENE 46 42406 - 42801 501 131 aa, chain + ## HITS:1 COG:lin0175 KEGG:ns NR:ns ## COG: lin0175 COG4824 # Protein_GI_number: 16799252 # Func_class: R General function prediction only # Function: Phage-related holin (Lysis protein) # Organism: Listeria innocua # 15 124 12 122 140 66 36.0 9e-12 MERYLNTITMLLSIFGGIVVRLLGGLDQLLDVFLFLIIVDFITGWIKAIATKELSSRIGM LGIAKKVTMLFVVAVAVRVEKVVGNNLPIREMVLIFYIANEGLSFFENIATFIPMPKKLK ELFIQLKNKDD >gi|307679014|gb|GL456783.1| GENE 47 42947 - 44044 1356 365 aa, chain + ## HITS:1 COG:SP1937 KEGG:ns NR:ns ## COG: SP1937 COG5263 # Protein_GI_number: 15901761 # Func_class: R General function prediction only # Function: FOG: Glucan-binding domain (YG repeat) # Organism: Streptococcus pneumoniae TIGR4 # 50 200 26 177 318 82 36.0 9e-16 MFKKLMIQLALVIGLSLTIPMTACAYIIEADPINFTYFPGSASNELIVLHESGNERNLGP HSLDNEVAYMKRNWSNAYVSYFVGSGGRVKQLAPAGQIQYGAGSLANQKAYAQIELARTN NAATFKKDYAAYVNLARDLAQNIGADFSLDDGTGYGIVTHDWITKNWWGDHTDPYGYLAR WGISKAQLAQDLQTGVSETGETVIVQPGKPNAPKYQVGQAIRFTSIYPTPDALINEHLLA EALWTQVGTITAKLPDRQNLYRIENSGHLLGYVNDGDIAELWHPQTKKSFLIGVDEGIVL RTGQPSLSAPIYGIWPKNTRFYYDAFYIADGYVFIGGTDTSGARIYLPIGPNDGNAQNTW GSFTS >gi|307679014|gb|GL456783.1| GENE 48 44197 - 45117 938 306 aa, chain + ## HITS:1 COG:lin1365 KEGG:ns NR:ns ## COG: lin1365 COG0130 # Protein_GI_number: 16800433 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridine synthase # Organism: Listeria innocua # 1 303 1 299 304 310 53.0 2e-84 MDGILPLWKERGMTSHDCVFKLRKILHTKKIGHGGTLDPDVEGVLPICVGKGTKVIEYMV DSGKTYEGEITLGFATTTEDVSGEIVEKKPVTTPLSTEQIDQAMAEMTGEITQIPPMFSA VKVNGKRLYEYARNGEEVERPQRKAMIYSFERTSEPIFNESAQTQSWRFKVVCGKGTYVR TLSVDTGKKLGYPAHMSDLTRTASGGLQAAQCLTLEEVAKQMAAETIDQCLLPIETAVEQ FPRIDLSDELYQKVKNGMRLHKKELGIKAMPESLVALFYQNQVVSLYMPHPTHDKLLKPS KVLRNN >gi|307679014|gb|GL456783.1| GENE 49 45143 - 46093 611 316 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 [Bacillus selenitireducens MLS10] # 1 310 1 312 317 239 41 1e-61 MQVIQLHHPYEPNQIPNEEVVMVLGFFDGVHKGHQKVIETGKKIAEEKGLKLAVMTFNQH PSIVFQKVLPENMKYLTSLEQKERLMANLGVDILYIVEFTSAFAQLKPQDFVDQYIVNLN SAVAVSGFDYTYGPKEIAGVKQLPTYAQGRFEVVTVPKEEMTGAKISSTRIREKMEAGEM EEVTELLGYIYETEGTVVHGDARGRLLGFPTANVKVKSTVRLPRIGVYAVQIEVGGKWYV GMGSIGHNDTFGKGRDLTVEVYILDFHQDIYGEQVVVRWNHYLRDQVKFNGAEALIDQLK QDERDTADYFQQSEDK >gi|307679014|gb|GL456783.1| GENE 50 46093 - 46689 618 198 aa, chain + ## HITS:1 COG:MA1701 KEGG:ns NR:ns ## COG: MA1701 COG3153 # Protein_GI_number: 20090553 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Methanosarcina acetivorans str.C2A # 1 198 17 207 217 119 34.0 4e-27 MKIRQEKPAEYQAVERLTYQAFKELNLTENWRPTEHFIVHLLRESADFIPELSLVSETDQ GKLTGHIMSSKAKLRLPDHTEKAVLTVGPLSVHPEAQNTGVGSALIKHSVQKAKELGVGG LIILGHPTYYTKFGFVPATTFQITLPEKETSEALLALELLPGYFGTSGGEWHFSTCFAYP ETHPAELEAFEAELGINE >gi|307679014|gb|GL456783.1| GENE 51 46839 - 47162 353 107 aa, chain + ## HITS:1 COG:lin0727 KEGG:ns NR:ns ## COG: lin0727 COG1695 # Protein_GI_number: 16799802 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 4 103 5 104 110 114 63.0 5e-26 MKQTELLKGILEGLVLAIIQRKETYGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVI AEKKPSEKGPMRKFYRLTSSGEAELADFWQRWTLLSKQVNKMKKMEG >gi|307679014|gb|GL456783.1| GENE 52 47166 - 47507 478 113 aa, chain + ## HITS:1 COG:lin0728 KEGG:ns NR:ns ## COG: lin0728 COG4817 # Protein_GI_number: 16799803 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 14 108 11 104 107 73 39.0 1e-13 MSNFKALIKKVVGDKKEYKEYKRRIAALPAEYRQVFQEIEKYAWHFSDHSGANMFNALTD LLDLFEEGAANGTPIKNITGEKVGDFAETIVNEVAGKWTDKQKEKLNHQFSKQ >gi|307679014|gb|GL456783.1| GENE 53 47533 - 47793 274 86 aa, chain + ## HITS:1 COG:no KEGG:EF1299 NR:ns ## KEGG: EF1299 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 86 1 86 86 127 98.0 2e-28 MVENFFKEGKLLVIPKKNAKKVQVFQRVANQFEFGKEYTEKEVNQRLREIYEDYALLRRY LVDYQYLERDKFGKIYQKCEQNTKII >gi|307679014|gb|GL456783.1| GENE 54 47952 - 49127 1045 391 aa, chain + ## HITS:1 COG:SPy0609 KEGG:ns NR:ns ## COG: SPy0609 COG0772 # Protein_GI_number: 15674690 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Streptococcus pyogenes M1 GAS # 11 378 23 405 434 207 36.0 2e-53 MNLRTLGLTKILLTFIILSIIGALMIYSASSYDLLMQGVKPTAVFIKQGIIMCLSWVLMF VIYKVRLEVLFNKKIAIGLLLVSVLLLLMVRLPFFGVAANGAQRWISLFGIQFQPSELCN FAIIYYLSCYLGEKENGLTTKQLRKQWLFVLVVAFLVLIQPKVGGAILILVIGSVLIFSA SIHAKFSVIAAGIVVASAALLSKIIIFLGDHRYLPHFFAHVYDRLVVLKNPFLSFHDRGF QPSMAYLAMYNGGFWGTGLANGMVKKGGLPEGQTDFIFAVIVEELGLIGGLLLLFLLLFL AASILRSSCVIKNHCYGLFFLGVGTLILAQTAINIGGVLGLIPMTGIPLPFVSYGGTSYL IFSVALGIVIKIIANERRQLNGQYKKIQLTS >gi|307679014|gb|GL456783.1| GENE 55 49093 - 50241 924 382 aa, chain + ## HITS:1 COG:L115706 KEGG:ns NR:ns ## COG: L115706 COG0772 # Protein_GI_number: 15672878 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Lactococcus lactis # 3 375 7 381 414 247 39.0 3e-65 MVNTKKFNLHLNYDLLLPIFLLTLLSSGVQYWIAVNEGKDGTVPALKQLFFIFVGYAGMF LASRLSQKFIWKVAPFFYGFSLILMSALYFSYDKGMYLLTGTKRWLDLGFIKFQPSEIAK IAFILMLAKIIVQHEQQDWSDKWRSDKQLLKKIVAVSVPVFFLMAVQKDFGTSLVFVTII LSLLVISGIDRKILIIIFSALATLGVVLILLVFTEWGHKVLFFLHFKQYQLDRILAWIHP YDYVDKISYQQVQGLLAIGSGGLFGKGVHGIEVYVPVRESDMVFTFIGEAWGFVGSATVV FLYFYLFYQVLVAGLRSNSRFCMYICVALIFSLVFQTVENIGAVIGLLPLKGIPLPFLSQ GGTSLVMAITSLGFVKGREAAT >gi|307679014|gb|GL456783.1| GENE 56 50303 - 51190 825 295 aa, chain - ## HITS:1 COG:ECs0391 KEGG:ns NR:ns ## COG: ECs0391 COG0583 # Protein_GI_number: 15829645 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 6 244 6 241 299 84 27.0 3e-16 MELFRLHYFLELCKVKQFTKAAENLAISQAALSKQIKILEATLGAELFNRQGQTTTLTPA GLILEKYCWRITNELVSIEEELKEINHSSNHIYVATYLCDLEYKLNDLLMTTLTDRSSNL QVHTIITENILQSLETMDADFGISFADLPLPEHIGKIDLFTANYQFILRNDHPALAKATT EEILKELTMYPFVRLNTEFSEQNKLTNWLDTTFSNFSPEKVIQVDTLSLITHLVSHSDSF AIVPEYTNIQLLDNSIHTLTYQELPKRNMAVYYLKERYMSRQLQQLLAECQKQFQ >gi|307679014|gb|GL456783.1| GENE 57 51214 - 51486 196 90 aa, chain - ## HITS:1 COG:no KEGG:EF1303 NR:ns ## KEGG: EF1303 # Name: not_defined # Def: LysR family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 90 202 291 291 187 98.0 1e-46 MFKRWERKINWENRQIVIELPSLHLVLDMVQREKACSILPYSLTDELNRRNLVGIPLEDS PERAIYLVQNNHHGHCEAHRYLFEQLRYLF >gi|307679014|gb|GL456783.1| GENE 58 51411 - 52088 596 225 aa, chain - ## HITS:1 COG:ECs2301 KEGG:ns NR:ns ## COG: ECs2301 COG0583 # Protein_GI_number: 15831555 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 197 3 201 297 89 29.0 5e-18 MKLQQLEYFMAVSKYASFTLASQKLHTSQPYLSTQLKELERELGASLILRDKKHCRLSPA GEVVAKRTEMIFALIKEAQEEINELVTQGSTTTIRIGTNLIDIDKAFGEVLLLFNQSYPY VSIDFKYYYDLETALETDLIDIGIGIFLDTSIPLEKELIYTESYLLCVNKNHPLAHADSV TIDEIRSLPFAAYSDQVYEKKCLNVGNVKSIGKIGKSSSNSLLFI >gi|307679014|gb|GL456783.1| GENE 59 52625 - 55285 2659 886 aa, chain + ## HITS:1 COG:L85514 KEGG:ns NR:ns ## COG: L85514 COG0474 # Protein_GI_number: 15673239 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 20 886 33 910 910 922 53.0 0 MEKKMRHLGHDYSYKKFAHSEVEKVLQRFGSTWDGIKHQDIEELQERYGRNKIMNEKKAS RLRLFIKSYITPFTLVLLALATISFFTEYVYAAPEEKDVTGVLIMLAMVILSGTMSFVQS VKSSNAVEKLQNMIKVTATVIRDKKQMEIPIEEVVCGDLVQLSAGDMIPADLRLIQSKDL FVSQSSLTGESFPIEKHATHQKDSDQIDTEYDNLLFLGTNVISGTGLGIVIKVGNQTLFG RMASDNGEEQQQTSFETGINKTTWVLIRFMLVITPTVFLINGLTKGDWVEALMFAIATAV GLTPEMLPMIVTTNLVKGSREMAKEGTIMKNVNAIQNFGGMDVLCTDKTGTLTQDKVILE YHYNIGCQEDQKVLDLAFLNSYFQTGLRNLMDNAVIQAATQESDIQSDDFYKVDEIPFDF NRRRMSVIIKEFKTRETRLITKGAVEEMLLVCTQVLLDGEIVPLTETLRQKITKDVEALN RDGLRVLAIADKKVEAAEWEYTTKDESELILQGYLAFLDPPKETAAAAIHALHQHNVAVK VLTGDNQYVTHSVCKEVGLAGEKIITGNELQQLNQEELRKTVQAYNIFAKITPDQKVRIV NALTENGQTVGFLGDGINDAGAMRAADVGISVDTAVDVAKESADVILLRKDLMVLEKGIL SGRRVFTNTMKYVKLTASSNFGNVFSVIPASIFLPFLPIAPIQSLLLNLIYDTSCMSVPW DKVDEEYVEKPKKWEPKSIGNFMRWFGPTSSIFDIVTYLFMYFIVCPAILGGSFFELNGA DQLLFIGIFHAGWFIESLWSQMLVLHFLRTEKMPFLQSSASGIMTLVTTAGIVLGTVLPF TAFGAELGFVGLSPSYFLYLIPTIVAYLALVAFIKVLYVKRYGQLL >gi|307679014|gb|GL456783.1| GENE 60 55493 - 56677 1211 394 aa, chain + ## HITS:1 COG:lin1513 KEGG:ns NR:ns ## COG: lin1513 COG0635 # Protein_GI_number: 16800581 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Listeria innocua # 17 389 13 385 385 426 54.0 1e-119 MTKTNQLSTSTPMFDRSAYIHIPFCEHICYYCDFNKVFLEGQPVDEYIQSLLKEIQLTQA LYPEQEMKTIYIGGGTPTSLSAKQLDVLLKGVREQLTFDDRNEFTVEANPGDLTQEKLQV MKNYGVNRLSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTNVSIDLIYALPGQT LESFRDTLTRALALDLPHYSLYSLILENKTMFMNWVRQGRLQLPEEEIEAQMFDETIEAM EKKGRHQYEVSNFALTGKESQHNLAYWNNDHYYGFGAGASGYLGQTRYKNHGPIQHYLKP LRENQLPIVETEELTRLNQIEEELFLGLRKKVGISKQKFQQKFHEPIEAIYGEVIQRLIK EELLIEEADILRLTKKGLFVGNNVFEAFLLSEKE >gi|307679014|gb|GL456783.1| GENE 61 56903 - 57946 1189 347 aa, chain + ## HITS:1 COG:lin1512 KEGG:ns NR:ns ## COG: lin1512 COG1420 # Protein_GI_number: 16800580 # Func_class: K Transcription # Function: Transcriptional regulator of heat shock gene # Organism: Listeria innocua # 1 343 1 341 345 265 40.0 9e-71 MITERQQNILRLIIQNYTNTGLPVGSKKLMEDGIASSSATIRNDMKALEEYGLLAKTHSS SGRIPSMAGYRYYVDHLLQPTQVEENELRRIRQSFGKEFHEINDIIRQSAEILSELTSYT AFSLGPEVKERKLTGFRMVPLNDRQVLAIIVTDKGNVENQVFAIPAAVSSQDLEKMTQII NDKLVGQPLLTVYHRLRTEIPMILHRYFQTPEGMMNLFDEMLGHAFEEKVFVGGRMNLLD FGIKQDIEQLKSVYSFMQNSDELTHLLNGSATTENPIVFRIGSEIGNNLLEDMSMITATY EVSGHGKGTIALLGPTSMPYSKIFGLVDTFRHELASQLGDYYRFLGN >gi|307679014|gb|GL456783.1| GENE 62 58001 - 58540 797 179 aa, chain + ## HITS:1 COG:SP0516 KEGG:ns NR:ns ## COG: SP0516 COG0576 # Protein_GI_number: 15900430 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone GrpE (heat shock protein) # Organism: Streptococcus pneumoniae TIGR4 # 25 177 24 172 174 132 55.0 3e-31 MSKKEEKQEELQEEMEAVDAAGVSEVEVEATEIENLKAELSEMEDKFLRARAEIANMSNR NKNERELLVRYRSQDLGKKILPSIDNLERAMAIEVSDEQGESLKKGISMVLESITVALKE EGIEEIPAMGETFDPNLHQAVQTVPASEETPADTIVEVLQKGYKLQDRVLRPSMVIVAQ >gi|307679014|gb|GL456783.1| GENE 63 58600 - 60429 2582 609 aa, chain + ## HITS:1 COG:BS_dnaK KEGG:ns NR:ns ## COG: BS_dnaK COG0443 # Protein_GI_number: 16079601 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Bacillus subtilis # 1 607 1 607 611 857 81.0 0 MSKIIGIDLGTTNSAVAVLEGGEAKIIANPEGNRTTPSVVSFKNGEIQVGEVAKRQAVTN PNTISSIKRHMGEAGYKVDVEGKSYTPQEVSAMILQYLKGFAEDYLGEKVEKAVITVPAY FNDAQRQATKDAGKIAGLEVERIVNEPTAAALAYGLDKTDKDEKILVFDLGGGTFDVSIL ELGDGVFDVLSTAGDNNLGGDDFDNKIIDYMVAEFKKENGIDLANDKMALQRLKDAAEKA KKDLSGVTSTQISLPFITAGEAGPLHLEMNLTRAKFDELTSDLVERTKVPVRQALKDAGL NPSEIDEVILVGGSTRIPAVVEAVRKETNKEPNKSVNPDEVVAMGAAIQGGVITGDVKDV VLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSKSQVFSTAADNQPAVDIHVLQGERPMAA DNKTLGRFQLTDIPAAPRGVPQIEVSFDIDKNGIVNVRAKDLGTQKEQTITIKSSSGLSD DEIERMVKDAEANAEADKQRKEEVDLRNDADALLFTVDKTLKELEGKVDAEEVKKAEDAR DELKAAIEANDIEQMKAKRDSLNEIVQNLTVKLYEQAAQQQAQENPEAAQGGADDVVDAD FEEVNGDDK >gi|307679014|gb|GL456783.1| GENE 64 60544 - 60666 82 40 aa, chain + ## HITS:1 COG:no KEGG:EF1309 NR:ns ## KEGG: EF1309 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 40 1 40 40 62 100.0 5e-09 MKELWYDYNDVKQAENTYSQLVTLIQGVTDNPTRETESNR >gi|307679014|gb|GL456783.1| GENE 65 60721 - 61890 1560 389 aa, chain + ## HITS:1 COG:L0272 KEGG:ns NR:ns ## COG: L0272 COG0484 # Protein_GI_number: 15674206 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Lactococcus lactis # 6 380 5 379 379 474 71.0 1e-133 MATKRDYYEVLGLAKGASDDEIKKAYRKLSKKYHPDINKEADAEEKFKEVSEAYEVLSDP QKKAAYDQYGHAGTDPNYGGGAGGFGGFGGGGFSSSGFGGFEDIFDSFFGGGGGRSVDPN APRQGADLQYTIQLKFEEAIFGVEKEIKYNREDTCATCGGNGAKPGTHPETCHKCHGSGT INVERQTPLGRMMSRQTCDVCHGTGKEIKEPCPTCHGTGHEKKAHTVKVNVPAGVEDGQQ MRLANQGEAGTNGGPYGDLYVVFRVEDSDIFDRDGAEIYYDLPVSFVQAALGDEVTVPTV HGDVKLKIPAGTQTGTNFRLRGKGAPRLRGGGNGDQHVKVKLITPKNLNEEQKDALRAFA KAGGQNVTEQQEEGFFDKMKDAFGGKKKK >gi|307679014|gb|GL456783.1| GENE 66 62129 - 62863 832 244 aa, chain + ## HITS:1 COG:lin0658 KEGG:ns NR:ns ## COG: lin0658 COG0639 # Protein_GI_number: 16799733 # Func_class: T Signal transduction mechanisms # Function: Diadenosine tetraphosphatase and related serine/threonine protein phosphatases # Organism: Listeria innocua # 1 235 1 235 235 193 40.0 2e-49 MKPYVYVISDIHGQADLFDALLTDYDPVEHQLVLIGDLNDRGPDSKACFLKGKELVEQHG AVYLRGNHEEYFLQFLQNPEDWFAEYVRNGGKETIESLLHPGATAEYSPTEMALMIRSRY PELIDFLTKRPLYFEWQHYLFVHAGVDLTMEDWRQTAPKDFLWIREPFHQGKNNTGKTIV FGHTITPMLHGDMQTTDLWQSDGKIGIDGGAIFGGSVHGVIFNEKGIVQDIEYQKRTPAW QPEF >gi|307679014|gb|GL456783.1| GENE 67 62961 - 65153 193 730 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229231694|ref|ZP_04356122.1| SSU ribosomal protein S1P [Cryptobacterium curtum DSM 15641] # 651 720 204 272 403 79 60 3e-13 MAEAYNEEVVALLQKELTTYRSKQITTVLTLLNEGNTVPFIARYRKEMTGSLDEVQIREI EERYHYLQNLKKRKEEVLRLIEEQGKLTKELKTDIQKAVKMQQVEDLYRPYKQKRRTKAT IAKEKGLEPLADWLLSLPENADILAKAATFINEEKEVATAEIALQGAHEILAERISDEPK YRTWLRDYMVKHAQYVSVVKDEEKDEKRTYEMYYDFAEPVSKMVPHRVLATNRGEKEDIL KVSLVADETKINDYFQRQLIGKQATSFAAPYIEAAYLDSYKRFIGPAIEREIRNELTEKA DEQAIAIFGENLRNLLLQSPLKGKVVLGFDPAYRTGCKLAVVDETGKVLAIQVIYPHKPA TAAKREAAGPAFKKIIEDYQVDMVAIGNGTASRESELFVAEQLKAVKRDVFYVIVNEAGA SVYSASEVARKEFPDLQVEERSAVSIARRLQDPLAELVKIDPKAVGVGQYQHDVSQKRLA EQLDFVVETAVNQVGVDVNTASAQLLQHISGLNKTTAQNLVTYRDENGVFTARNQVKKVP RLGPKAFEQAIGFLRIPNGKNVLDNTGIHPESYPVAQAILEKAEIASKELGTAEAIEKLK QLPVNQLATELEVGSETLTDIIASLIQPGRDMRDEMSAPLLRKDVLTMEDLKPGMEMQGT VRNVIDFGAFVDIGVKQDGLVHISKLSPKFVKHPTDVVAVGDVVTVWVEDVDLKKGRISL TMLPRADRKE >gi|307679014|gb|GL456783.1| GENE 68 65156 - 65641 333 161 aa, chain + ## HITS:1 COG:SPy0581 KEGG:ns NR:ns ## COG: SPy0581 COG3091 # Protein_GI_number: 15674669 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 14 152 3 139 145 146 50.0 2e-35 MKESQPVLMTDQALQTLVEKISIVFFQKPFLHQATFNRRLKTTGGRYHLASHHLDFNPTV FLKYGQEELEKVIKHELCHYHLHLAGKGYQHKDKDFKELLAKTGGARYAPPLVERKKAVF HQYQCQSCGEVILRKRRIDTTRYVCGKCHGRLSWQAKKEQI >gi|307679014|gb|GL456783.1| GENE 69 66040 - 67257 1260 405 aa, chain + ## HITS:1 COG:L162604 KEGG:ns NR:ns ## COG: L162604 COG0436 # Protein_GI_number: 15672142 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Lactococcus lactis # 1 404 1 404 404 670 76.0 0 MRNFKKSDKLNNVSYDVRGPVLEEAERMQEEGIRILKLNTGNPAPFGFDAPNEIVRDMIV NVRDSEGYSDSKGIFSARKAIEQYCQLKKFPNVTINDIYTGNGVSELITMCMQGLLNNGD EVLVPMPDYPLWTASVSLAGGTPVHYICDEQAEWYPDIDDIKSKITSNTKAIVIINPNNP TGALYPKELLLEIVEVARQNDLIIYSDEIYDRLVMDGLVHVPIATLAPDLFVVTLNGLSK SHRVAGFRCGWMVLSGDKSRVKGYIEGLNMLASMRLCSNVLSQQIIQTALGGYQSVDDLL LPGGRIYEQREFIYNAINDIPGLSAVKPKAAFYIFPKIDTAKFDIYDDEKFVLDFLHKHH ILLVHGGGFNWQQPDHFRIVYLPKMEDLKTTADKMREFLSTYKQK >gi|307679014|gb|GL456783.1| GENE 70 67323 - 67499 322 58 aa, chain - ## HITS:1 COG:no KEGG:EF1315 NR:ns ## KEGG: EF1315 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 58 1 58 58 93 100.0 3e-18 MAEEKKVHFIWEKTNYSGFVEKEYENSYLIVVANPSPDMEEKYTNRMIISKKACETAE >gi|307679014|gb|GL456783.1| GENE 71 67677 - 68504 980 275 aa, chain + ## HITS:1 COG:no KEGG:EF1316 NR:ns ## KEGG: EF1316 # Name: not_defined # Def: Cro/CI family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 275 1 275 275 493 100.0 1e-138 MNSLGAVIKEIRKNRKLTQKMLSEDICSQSVLSRIENNEELPNVLVMQQLCDRLGVTVDQ IMRYKSGDVHVVTYSFEKMAEYFRHKKYQLLLNYLKENRIEEQLYLDTDWQKYYYYLGSC ELFVLNDYEKAIASLRKGLSFTYKADKLNVSDLEIQLISCLGATYGYMGNRVEAERFLSL SIHYFNQLPNERSNAELTKIFFNYADFLFKNYTEKDAEIYVDQGITWARKKNSYYYLSEL LNLKYLVLMRKNKHEEAERYLNLAQQMKNVESGNL >gi|307679014|gb|GL456783.1| GENE 72 68605 - 69753 1652 382 aa, chain + ## HITS:1 COG:SPy1694 KEGG:ns NR:ns ## COG: SPy1694 COG1820 # Protein_GI_number: 15675552 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Streptococcus pyogenes M1 GAS # 1 382 1 382 382 484 63.0 1e-137 MKTFIFADKFFLKSDVKGPGYLEITDGIFGNYTKDEPQGDVKIIREEGKWIAPGLVDTHI HGYMNHDVMDNDAEGIKVMSEGLLSCGVTSFLPTTLTSSKERLTDVARTIGQVYQEVPGA KIQGIYFEGPFFTEEHKGAQNPSYFGDPDLDTFHEWQEASGGIIKKIALAPERNGVKEFV ETVTDEGVVVALGHSNATLEEADVAVEAGASVFVHAYNGMRGLNHREPGMVGALLTLQHV FSELICDGHHVHPQAAEVLMEKAGHDHVALITDCMMAGGMPDGNYNLGEFPVVVAEGTAR LDTGNLAGSILKLKEAIKNVVDWGIATPAQAIMMASLVPAISCKIDDQCGMIANGRDADF IVLEPTMELAATYLDGVERYRA >gi|307679014|gb|GL456783.1| GENE 73 69796 - 70182 609 128 aa, chain - ## HITS:1 COG:no KEGG:EF1318 NR:ns ## KEGG: EF1318 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 128 1 128 128 197 100.0 1e-49 MDFEQLKETLPDAKPQTFLQAILSQPQEEDAELTFSEEIDEQFVENCKFLASPETISETD VEHWREQEFLVVAQSLDGDYLAGTLEQTFVIPSSLYKEDIEQFDKQLIDFFIAYENKEIT SAILPKEL >gi|307679014|gb|GL456783.1| GENE 74 70196 - 70855 776 219 aa, chain - ## HITS:1 COG:no KEGG:EF1319 NR:ns ## KEGG: EF1319 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 219 1 219 219 380 99.0 1e-104 MANRKKKPPFNSTIMLIGALIILILGAVGVKVPDALQDLFNVQPQTTTPSSTPAPKGDNP GPIENGKATFSAEELKDNSNGWITYHSLDRLKRATGADALLKPAMVNTGTSANKDIRPAG FISGKANHSRGHLIGRQMGGSGDDPRNLTTLYQNPVNTPYMTKYENQIRAALDRGETVRY RVTPVYNGNDLLAEKIILEAKSLKTNSPIDFSVTILNKQ >gi|307679014|gb|GL456783.1| GENE 75 71016 - 71717 344 233 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 4 218 2 219 245 137 37 9e-31 MAYIEVKNEYKRYQMGETTITANDGISFEVEKGEVAVILGPSGAGKSTVLNILGGMDSCD EGEIIIDGTDIAQFSEKQLTTYRRNDVGFVFQFYNLVPNLTAKENVELASQIVADALDST NVLQSVGLGERLDNFPAQLSGGEQQRVTIARAIAKKPKLLLCDEPTGALDYETGKQILTI LQNTARETGTTVLIITHNSAIAEMADRVIRINDAKVREMTVNDQPKLVAEIEW >gi|307679014|gb|GL456783.1| GENE 76 71727 - 74363 2295 878 aa, chain + ## HITS:1 COG:L111162 KEGG:ns NR:ns ## COG: L111162 COG0577 # Protein_GI_number: 15673086 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 8 876 7 894 896 583 37.0 1e-166 MKKTALIKTSLREIRQSTTRFLSIMGIIFLGVMVFVGLKATGPDMIKTANNYYQKEQLPD ARIISTMGLEKKDLTTLQSLKDVETVVPRYTIDATIGPQNNAVKLFGYRKNQAGSVNYQV VDGRLPKQTNEIALDTLAKTRYDYKMGDKITLNDVAIKEKGLTQTHFTVVGFINSAEYID NTSRGTTTVGSGTLNFFGVVSEKAFDSQRYPELLISFRSLKHQNTYFSDYEKKREQALNQ VKEALKNRPEEQIAALRDSAQPDINQGRQALETGKQALAQLEQQPGIPAEMLEKQKDELA KQEQLLAEKETELANLKAPTYYYFTREDNPGFSEYQDNADRISSLATLFPLFFFLIAALV SLTTMTRMVEEKRMEIGSLKALGYRNREIASIFITYATVASLTGALLGLAVGYYLFPKII FDAYGQMYNIPDLVTPWYLNYSLWGIIVALACTVGAALVTLRIDLLSTPATLLRPKAPKA GQRILLERIRPLWQRMSFIQKVTARNLFRYKRRMLMTVIGIAGCMGLLIVGFGLRDSIVD VATIQFNKIWHYQAVVTFKEQTTSEETKEYQETLRKLDGLNKTIPLYSEIFKTKGKGAPT QNITLYVPQNPSKMADFQLFNDRVTGEKYSLNDDGVIINEKLAKLFGYKVGDQLNLENSD NQTYHVKIAAIAENYTGHFVYMTPKLYQTMTKQKPEYNTEFLLFDKKLSSKQETSIGEAL TKQPKVLNITFLTAMKGSFDDMLKSLDIVIWVLIAVSGSLALIVLYNLTNINVSERIREL STIKVLGFYDREVTTYVYRENIILTFIGIIVGCFFGKILHQYILATVEVDLIMFSPIIHW PSYLYSAVITMCFTLFVMVIMHRKLKKINMIEALKSNE >gi|307679014|gb|GL456783.1| GENE 77 74556 - 75080 650 174 aa, chain + ## HITS:1 COG:no KEGG:EF1322 NR:ns ## KEGG: EF1322 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 174 1 174 174 305 100.0 5e-82 MLEGLPLETVYFYALVGSAVLAFLLIIFGDVFNFDGPVDPMLIIPWIAFTSLFGYLGEEL TAVNSWLILIVSGILSTIIVFFLNFYVLVPLKNSEATISISEKDMEGRVATVITPIPVRG MGEIQLKSVTGSLSRPAAFYVPQEVAAPRGSEVLIIELKERVCYVIPYEGSLKI >gi|307679014|gb|GL456783.1| GENE 78 75097 - 76566 2266 489 aa, chain + ## HITS:1 COG:BS_yuaG KEGG:ns NR:ns ## COG: BS_yuaG COG2268 # Protein_GI_number: 16080153 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 473 3 486 509 532 68.0 1e-151 MGILLPIIIAVLVLLMLLIVFVSKYQTAKPDEALIISGSYLGSKNVHVDEGGNKIKIVRG GGAFVLPVFQRSNRISLLSSKLDVSTPEVYTEQGVPVMCDGTSIIKIGSSVEEIATAAEQ FLGKTTEELENEAREVLEGHLRSILGSMTVEEIYQNRDKFSQSVQEVASVDLAKMGLVIV SFTIKEVRDKNGYLDSLGKPRIAQVKRDADIAEAEALKETRIKKAEAEKESQQAELQRQT EIAEASKEKELKLALYKQEQDIAKAKADQAYNLESARAQQHVVEQEMEVKVVERQKQIEL EEKEITRREKQYDSEVKKKADADRYAREQEALAQKAREVAEAEAERFKVEALAEAEANKT RLTGQAQAEAILARGAAEAEAKQKIADAFKEYGEAAVLSMVMEMLPQLMKEAAQPLGNID KISVVDTGAGGENSGANRITNYATNLLAGTQETLKETTGLDVKELIENFSKKGTSNSVNY HATEGSEKE >gi|307679014|gb|GL456783.1| GENE 79 76713 - 76946 391 77 aa, chain + ## HITS:1 COG:no KEGG:EF1324 NR:ns ## KEGG: EF1324 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 77 1 77 77 119 100.0 3e-26 MSKKNKDIEVRVEEEKAQYNGANVLMNKLFIGKKEIGRVIPQNDKKFIIEIDGKQEGTAK NLDEAFETIIRQWNLSE >gi|307679014|gb|GL456783.1| GENE 80 77359 - 77538 250 59 aa, chain + ## HITS:1 COG:no KEGG:EF1325 NR:ns ## KEGG: EF1325 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 59 1 59 59 93 100.0 2e-18 MNFKEKITEMVENVYDLARDGKYDVKVDLIPRKKGNIKSGVKVTSSRNTAHNIKWRSKN >gi|307679014|gb|GL456783.1| GENE 81 77594 - 78202 512 202 aa, chain - ## HITS:1 COG:L108801 KEGG:ns NR:ns ## COG: L108801 COG1309 # Protein_GI_number: 15674221 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 202 1 202 204 198 48.0 6e-51 MAKKTDLRVQRTRKMIIEAFFKLVETKGYEAVTIQDIADEAMINRATFYAHFKDKQHLYD AIFTFTLSAFTAILDSQQLVNGNRVRVKHIEELLTQLYINIQENKSFFLTIMDNNFNEHF RKRLAEIIEEKYATIFSQLRITENDIDVPIDFVIEYMTSIFIGTLHWWITSETDMTPNHL AQLVIKLVGNGHLTVLGIELEK >gi|307679014|gb|GL456783.1| GENE 82 78381 - 82628 4483 1415 aa, chain + ## HITS:1 COG:L104115_1 KEGG:ns NR:ns ## COG: L104115_1 COG1924 # Protein_GI_number: 15674220 # Func_class: I Lipid transport and metabolism # Function: Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) # Organism: Lactococcus lactis # 2 633 4 634 634 909 70.0 0 MVMRAGIDVGSTTVKLVFLNKQNQPIFTKYERHFSDVKAATERILKEGLARIGADQPVTM SITGSGGMGLAEVLGIPFVQEVIACTRTVETIIPETDVAIELGGEDAKITFFDGALEQRM NGSCAGGTGAFIDQMAVLLKTDANGVNELAKNYQTIYPIASRCGVFAKTDVQPLINEGAA KEDIAASIFQAVVNQTIAGLAAGRKIKGKVAFLGGPLFFMSELRKRFVETLAIQTEDVIF PEQPQLFVAMGAALYSEDAAECTLEELIQRLVNSQATDLQPSDTLPPLFNSAEDLADFRE RHAQAQATEKPLSQHTGVTFLGIDAGSTTTKVTLIDEDGHLLFSFYGNNQGQPLETTMTV LKSLYQQLPEEVFIGKAAVTGYGEQLIKNALKVDIGEVETMAHYKAANHFQPGVDFILDI GGQDMKAMTIKNGVLSSIQLNEACSSGCGSFIETFAQSLKYNVKDFALAALESQAPVDLG SRCTVFMNSKVKQVQKEGASVGDISAGLSYSVIKNAIYKVIKVRRPEELGEKIVCQGGTF YNEAVLRAFEKISGREVVRPSIAGLMGAYGAALIALDAYEIGEETTLLSLEELAAFTSEK EFTHCGLCENNCQLTVTVFSDGRQFITGNRCERGARIKIKREERKVNLVDYKYRKLFKYR PLRENKAFRGRLGIPRVLNMYENYPLWHTFFTDLGFRVELSPRSNKQIYEQGLETIPSDT VCYPAKMAHGHIQALIDAQVPIIFYPGVVFEQQETVEADNHFNCPIVQSYPDVIRNNVDA IREGQVDYRNPYLNLANEAAVAKVLAENFADLGISLEEIQTALHHGYQELAAFKKEIQEK GEETLAMLTEKGQRGIVLSGRPYHLDPEINHGIAEVITQEGFHVLIEDSISHLGDVQNLR VVNQWVYHSRLYAAAKVVAKTKNLELVQLNSFGCGLDAVTTDQVEEIMDRSGKIYTVLKI DEGANLGAIRIRLRSLKAAVNEREKQQFVPHMQMEEPEKIVFTKQMKKTHTLLLPMLSPI HQSGLVDVALQASGYHVVCLPAQDKEAVNVGLKYVNNDACYPAIISIGQLVEALESGQYD LDNVSVLMTQTGGGCRATNYIPLLRKALNDAGFSQVPVVSVSMGNKGVESNPGFKFTLPM IKRLVVAFLYGDLFERVVYRTRPYETEKGMVDQLHQDWLKRVEANVRNGSLTQFNHFMKK IIRTFDEIPLQEIKKPKVGVVGEILVKYSPTANNDIVRLLEEEGAEAVVPDIVGFMNYSL YNQIWKYENMGMSKQSKRLAEFAIKIIELVEKPMDKALRKSVRFDGIHSIYDMAADASKI LSIGNHTGEGWFLTAEMIELLKHEVNNIVCMQPFGCLPNHIVGKGVVKELRRQYPQANIA AVDYDPGVSLVNQLNRIRLMMATANKLLKEENVKR >gi|307679014|gb|GL456783.1| GENE 83 82835 - 83542 915 235 aa, chain + ## HITS:1 COG:L0151 KEGG:ns NR:ns ## COG: L0151 COG2188 # Protein_GI_number: 15673419 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 3 235 4 235 235 264 56.0 1e-70 MVQNIPIYIQIHDKIKEDIEKGVWSIGDRLPSERELALKFDVSRMTLRQAIQTLADEGIL ERKIGSGTYVARKKVQETMTGTTSFTEITLSQNRVPSSRTVSYFVAKPSSSEMEKLQLGP EDSILRMERIRFADDIPICFEVASIPYSLVSQYGKSEITNSFYKTLEAKSGHKIGHSNQT ISAVQASEQIAEYLEIKRGDAILRVRQVSYFENGLPFEYVRTQYAGSRFEFYLEK >gi|307679014|gb|GL456783.1| GENE 84 83947 - 84240 454 97 aa, chain + ## HITS:1 COG:CAC3713 KEGG:ns NR:ns ## COG: CAC3713 COG4842 # Protein_GI_number: 15896944 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 3 97 2 96 96 92 70.0 1e-19 MAGSIAVTPEQLKSQAKVYSQASSQIQDAIRKVNSMNQQISQQWKGQAFQAYLEQYNQLE GNVKQMEELLISINQQLNKYADTVAERDRQDAGSFGF >gi|307679014|gb|GL456783.1| GENE 85 84307 - 87744 3557 1145 aa, chain + ## HITS:1 COG:CAC3696 KEGG:ns NR:ns ## COG: CAC3696 COG1511 # Protein_GI_number: 15896928 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Clostridium acetobutylicum # 42 460 58 473 941 155 26.0 6e-37 MEGKIKKGIPFALAIGATFLLLLFFIHLGFKDENVTRSSKDQTTKMQYALVNEDKGASFE GKRYALGSDFVTLINKDTANRWETTTRNIATSGVENGQFDAQIIIPQDFSEKLLLLQAVS PEQASVEYQVRDGQNELTNQAIQDKVNTILKDFNQRVIQMYFSSIVGNLVIAQQNVNQIT DTQLLYQNQLEETIQQPFKEIPMNYTTVLSTASILDEDNKLFTNEQEAFVKSVQTLLESN NRSLESTSKTTEDTKKSVDEYSKEANEKIKKSIAQFNEQFERQKQELTNQWESDTTVYKQ QFDQLNGMVINQFSSFYTPSEQGSSGIYADFLSESKLFQETQSNRIGELQKEIAELHMQV EQLTALKKQIAATYYNDLEATPEIATDTQIKQAIIQLITNEKENIPNLDKNYQERLEESL SEISFVSLERLVSELEMNNRISVEQGNLFRDELQIIQRYAEQHELDFTNSSRFMYLEPKQ LHEDTIAIPQEKVTFSLATNQESVISLRQTNTQNGELSFLLDDSKVQTIKTSLNQQLAGT GYSIDISAITPTQLTITKPVKIQAEIPENDEVDEENTQEELAEESEDESEKVTEPVNDLL SLPEKLYLTIDLPMSWQLTPEQQKTAFNQIDYSWWVNNELQNARSFAVYIAMDQPLVTDI PEIMKQFQLLDTVSQQIVTLYGTPNQSLSIQEYAAMLTAPENQDKTIEELAGETSIYWMY DNITENEQTMMITDKLLDEYKKTGNQLYRETDEQINQLKQLIGTETDQNTDGRPTTLYGT LNLMTVPEKLLREAEKLNTWFDEATKQVNATYATWQEAGKVGATSVIDERNPHPEENQTS TLDAETENLVKMMQTLMQTTKETSLTTADSAAKVKDVAPTIKELKASTTKVQDHAQNILA NLNDSIDESKKTTKENEEYAKTFEKVLANTRDGGADNPRVFSFLASPIQGEGIFGETRQV SLIPYYATLIVSILTFVIALTFQGFMKKRTVTVADALVEPTRVWQNIPNLLLLLITVILF GSVFSLLLVFNVSQINRFAWFSYSFLVFASGALLVCACLRQFKKLTLYVYGAMLGLFFML TPLLGIATKVGSLSNWLYRLSPLQNIQNGFTALVNGVQISWVSYLILIVLLVLGVVLNLF VRPEE >gi|307679014|gb|GL456783.1| GENE 86 87747 - 88244 219 165 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229550183|ref|ZP_04438908.1| ## NR: gi|229550183|ref|ZP_04438908.1| conserved hypothetical protein [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis T3] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis E1Sol] predicted protein [Enterococcus faecalis X98] hypothetical protein CUI_2521 [Enterococcus faecalis PC1.1] hypothetical protein HMPREF9498_03274 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9521_03134 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9505_01587 [Enterococcus faecalis TX0109] hypothetical protein HMPREF9510_00196 [Enterococcus faecalis TX0470] hypothetical protein HMPREF9504_01451 [Enterococcus faecalis TX0102] conserved hypothetical protein [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis T3] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis E1Sol] predicted protein [Enterococcus faecalis X98] hypothetical protein CUI_2521 [Enterococcus faecalis PC1.1] hypothetical protein HMPREF9505_01587 [Enterococcus faecalis TX0109] hypothetical protein HMPREF9521_03134 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9498_03274 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9504_01451 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9510_00196 [Enterococcus faecalis TX0470] hypothetical protein HMPREF9500_00081 [Enterococcus faecalis TX0017] hypothetical protein HMPREF9501_00121 [Enterococcus faecalis TX0027] hypothetical protein HMPREF9497_01318 [Enterococcus faecalis TX4244] hypothetical protein HMPREF9508_02036 [Enterococcus faecalis TX0312] hypothetical protein HMPREF9516_02147 [Enterococcus faecalis TX1302] hypothetical protein EF62_1776 [Enterococcus faecalis 62] hypothetical protein OG1RF_11102 [Enterococcus faecalis OG1RF] # 1 165 1 165 165 290 100.0 3e-77 MRKLIKIVIVLSVNMLYLSLSSTKTKAEEVGALKINNQVIYQDNQQKKNVEVNFIIPDLF LPIKAEREKEVNQSKARVVNEAKNDVFRTEQNAKTLAVDKKVRPFLFKETATVTSPESVE SLEVQREISINFWLYSGIFLGSIVILFVGVFLGNRFSYHRAQSGN >gi|307679014|gb|GL456783.1| GENE 87 88259 - 88528 337 89 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229550182|ref|ZP_04438907.1| ## NR: gi|229550182|ref|ZP_04438907.1| conserved hypothetical protein [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis T3] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis X98] YukD protein [Enterococcus faecalis PC1.1] YukD protein [Enterococcus faecalis TX4248] YukD protein [Enterococcus faecalis TX2134] YukD protein [Enterococcus faecalis TX0109] YukD protein [Enterococcus faecalis TX0470] YukD protein [Enterococcus faecalis TX0102] conserved hypothetical protein [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis T3] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis X98] YukD protein [Enterococcus faecalis PC1.1] YukD protein [Enterococcus faecalis TX0109] YukD protein [Enterococcus faecalis TX2134] YukD protein [Enterococcus faecalis TX4248] YukD protein [Enterococcus faecalis TX0102] YukD protein [Enterococcus faecalis TX0470] YukD protein [Enterococcus faecalis TX0017] YukD protein [Enterococcus faecalis TX0027] YukD protein [Enterococcus faecalis TX4244] YukD protein [Enterococcus faecalis TX0031] YukD protein [Enterococcus faecalis TX0043] YukD protein [Enterococcus faecalis TX0312] YukD protein [Enterococcus faecalis TX1302] hypothetical protein EF62_1777 [Enterococcus faecalis 62] YukD superfamily protein [Enterococcus faecalis OG1RF] type VII secretion protein, YukD family [Enterococcus faecalis TX1467] # 1 89 1 89 89 160 100.0 2e-38 MNKRTSIGIGLHVSNQIIDLQIPNQVSVARLKELLLESFEMLPNRLPASFELVVLNKPIH LADNQLIADYPLGNGDQLVVKEIVKETHG >gi|307679014|gb|GL456783.1| GENE 88 88525 - 89697 1450 390 aa, chain + ## HITS:1 COG:CAC3710 KEGG:ns NR:ns ## COG: CAC3710 COG4499 # Protein_GI_number: 15896941 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Clostridium acetobutylicum # 10 381 9 370 371 205 34.0 1e-52 MSELKDISETITLEATKEYVQVTLQANQYQLERLEQFQQFLKSSRGFLSGKIIQATEEAL VIQYHKDQYMQSILQAIKKMDQYERLLLAQRVHYLVDFLGTPVQPFIHPENIYILGEELL IAHRGFMQVIVPYSADEREFFKQYRALILAILHPKYEYEQLIQGNGTLKDTLSKQLQEAK TINEIEQIIGEQIIRQKAKREAETKLVSKKSYLTFKWASLVLLALTLLFATTTGIYVLKK LPAQERVSLAEAQYISNDYASVTKTLKEDTPEELPIGAKYVAAVSSVQLDNLSNEQKTAI LNNLSQKSSENTLLYWIYIGKGDFEKSLDIAQNLGDNQYILHAYTKLYDATKANNKMNGE KKQALLTKYEEAIDKYMKILGGKTDDNENQ >gi|307679014|gb|GL456783.1| GENE 89 89678 - 94126 4459 1482 aa, chain + ## HITS:1 COG:CAC3709 KEGG:ns NR:ns ## COG: CAC3709 COG1674 # Protein_GI_number: 15896940 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Clostridium acetobutylicum # 19 1468 25 1475 1498 1171 43.0 0 MTTKISKKLVSVNDQIHTSSMIYFDIFYFGPQLLHRQITAKNPSVSINQQLFFYENEELF CNGETFDSAENFSVFPHEELITVTTNKPQKDFLIASAKNAAISLETDAIINITLTPETGE YTATIYPGEDTIYYNHYLVEKGSYAFAVGDQLVVNGLIIEVREKQLKLTSLGATYSLNPW QIVEEEVIPEYPVDFPSFRRSPRIHLKEPKKQIEIAAPKAKQTEGKNELLRTIVPPLGMV VLSGATSFLSGGNPIMMLSMGGASLLTAGFSVSSYFTNKKETKQKNIERTNSYEQYLIQE KARLSILQQEQKEALEYMNPAMNELALMTKEYHARIYERMMTNEDFLTVRLGVGEISSSF TTNYQSTEDDSLSQEAEEQLVWPYKQLEKAPIVVPLMGQTLGLAGTPAVLRTAIQTLLFQ VSVLHSYRDVEFVTLVPEEDYQKDWHSWRWLPHVKIRSLNLRGIVHDPQTRDMVLNSFYQ MITKRRQQVREAGNEKVHFQPQYILSILEESWLSGHGLNEFLAEDMSQYGVTVIWGKDAL NMLPETTTTLIEYQSSEAATLINQNNKYVNQNFVPNHLPTAYPLAYAIQRLANLQHVEVE KNAIPEAIDFLELYDVKEIKDLNVTDRWQKADTSKSLAVPLGVRGKDDIVYLNLHERAHG PHGLVAGTTGSGKSEIVQSYMLSLAVNFAPEDVGFLPIDFKGGGMANLFAKLPHLLGSIT NLDGASSARALQSIRAELQKRQRKFGEYGVNHINGYTKLYKQGKEITDPEEKKNYPSEPL PHLFLISDEFAELKANEPDFMAELVSTARIGRSLGVHLILATQKPSGVVDDQIWSNSRFK LALKVADANDSNEIIKTPDAASITQPGRAYLQVGNNEIYELFQSAWSGANYDPFATKEEK VDERIWSINQLGQYELLTADLSEEEEVSIKTEEELTQLDAIVEEIAKHVEESQATLPEKP WLPPLATEIVSPLFKTQWQEQRELSVPFGFMDIPAKQEQVNFNFDLHELNHTALYGSPGF GKSTALQTLVMNFARKNTPEQVQFNLFDFGTNGLLPLKKLPHVADLVRLEEEEKLVKFLK RIRKEIQERKEAFTEYGVASLNQYEEKSGQKLPVIVTIVDGFDAVKESPLEDPIESVLNQ LLREGASVGLYTIITVLRTNSFKMSMTSNIPTHIGLYLVEEDAIRDVVGREALIPQEIMG RAQVKLEQPQEIQIYLPTEGENDIARLNRLEQEIEKMSQKWGGERPLPIPMLPKTIAMAN LYNHPHAQQMLENMEFPIAFDKETTNIVGFKPTEHGYFVIGDDTPQQNESVEKVIIEDMK HFRGRAERIIFNHSDRFGGYADSFDTVIAGTEYGSFVNELLQEIEQRQMISEYEPMLIYI PEAQQFVEKSFISAENLNILLKKGSQVAMYFIFQTNQKLLENSFNDADKLLRANIPAGMV GTRLADQSFVKTKSDYNESAVELDESHFFEGRTAMRVKLVSE >gi|307679014|gb|GL456783.1| GENE 90 94141 - 95013 706 290 aa, chain + ## HITS:1 COG:no KEGG:BCZK0586 NR:ns ## KEGG: BCZK0586 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus_ZK # Pathway: not_defined # 1 287 1 290 292 170 40.0 7e-41 MNNEFSKLIDMKKSEEEIETNHFIIKDNILRFDHLTLQLSNISRIYAGTKRMRIPVMAIS IFVLAFGTIRFEGLRWISLIIMGLTGLYIYMVYQRHQSNKEYLIFQLNSGDNYSLYFQDA EFLNKVRNAVEAAFNHKNMYSEINIAEQKIIQGNHHVIHGNQANLNTGIQQGNTMHSNNH EEHSSTTVGDITDSTIHHSTFGNQNHQKNEQPVYDWPVLEANFKAVITSLKNEDETKQVN RQALKAVEKKDAKQFETIIKMNRKIFTSNLFLNTASGVLAQVISTILGIR >gi|307679014|gb|GL456783.1| GENE 91 95026 - 95472 558 148 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229550178|ref|ZP_04438903.1| ## NR: gi|229550178|ref|ZP_04438903.1| conserved hypothetical protein [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis X98] hypothetical protein HMPREF9505_01582 [Enterococcus faecalis TX0109] hypothetical protein HMPREF9504_01456 [Enterococcus faecalis TX0102] conserved hypothetical protein [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis X98] hypothetical protein HMPREF9505_01582 [Enterococcus faecalis TX0109] hypothetical protein HMPREF9504_01456 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9497_01333 [Enterococcus faecalis TX4244] hypothetical protein HMPREF9502_01334 [Enterococcus faecalis TX0031] hypothetical protein HMPREF9503_01693 [Enterococcus faecalis TX0043] hypothetical protein HMPREF9508_02041 [Enterococcus faecalis TX0312] hypothetical protein HMPREF9516_02152 [Enterococcus faecalis TX1302] # 1 148 1 148 148 170 100.0 3e-41 MSDEAIKAQKRALAAGKRAEASHLSSQVNMAQANKNQIDQKIRELEKAIRELSREILSIH QLKSTVSSQLKSISGSNFKGTRRNKYNEKVRKVDSDLSKYATKNQENLQTFQRKLSNLQE EAQREAMTISSLNSQISALLSIAMSLDS >gi|307679014|gb|GL456783.1| GENE 92 95492 - 95764 347 90 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307288175|ref|ZP_07568185.1| ## NR: gi|307288175|ref|ZP_07568185.1| hypothetical protein HMPREF9505_01581 [Enterococcus faecalis TX0109] hypothetical protein HMPREF9505_01581 [Enterococcus faecalis TX0109] hypothetical protein HMPREF9516_02153 [Enterococcus faecalis TX1302] # 1 90 1 90 90 119 98.0 8e-26 MKSGVNLSEWTQSVNKANSTISGIGKMKTVSFSQTNARPFTEFKTMIEQINSSLESYKEF AKGSTNKMIAAGKNKANDDKAGAATMKISQ >gi|307679014|gb|GL456783.1| GENE 93 95778 - 96422 708 214 aa, chain + ## HITS:1 COG:no KEGG:SGGBAA2069_c04950 NR:ns ## KEGG: SGGBAA2069_c04950 # Name: not_defined # Def: hypothetical protein # Organism: S.gallolyticus_gallolyticus # Pathway: not_defined # 27 213 26 212 220 136 34.0 7e-31 MNQQQKELWVATIESSNLTGEITKDTINELGLILGGQPQLAQNIYQSFLNQTTSYEHKPR IGAIIHISFDYEKERVTFAWLKKQVVLTVPQFKRFMGFVDTIFTEIYPIGTIVELDEELL TEDVKALFTTDELGLFVSVQGRKLTIPETQMMIDYVGTLWPFGLQAEVEPIYFNSVMVKR VISEGPTNAYEEKFTFEVLRKQLAQDEKYSCTYV >gi|307679014|gb|GL456783.1| GENE 94 96438 - 97979 1539 513 aa, chain + ## HITS:1 COG:no KEGG:GALLO_0562 NR:ns ## KEGG: GALLO_0562 # Name: not_defined # Def: hypothetical protein # Organism: S.gallolyticus # Pathway: not_defined # 1 216 1 220 514 121 39.0 7e-26 MKINMREVMEAKNKITSSRNKLQAEINRAKSDWKTVQGSDALSGKVKTAINGEIGNYQLP MLTNYYDLLHTIAQEMEKTISDFKASVKENSDSAIIDTDVLNEAKGKFSTPLSNFAKLDK KISNIYSSVAHIVPISAPSNQFNKKMEEAKKVLTETLKGMDTFNGRKAGSAVKDKLAQQS SQITNVGGLSYSNPKSLEIFTDKTFKNEIKEAHKKVQEEEKDRLAFEKDHPILMAMDGNL TEEKLDELDKLINHAIAKGVVSGKKYINHMKKLYISSRIKRLPNGKLVMRRAKGWLKKLD QLADIDDYVPKGHRSLSITASGTAKEFTKLGDKLLGKLDLVDKKSILRESGEAFSKASIK GVAKGTLKSMGKSLKKGLSFGVNGVVKDAKALINAKGAGKIIPGLNIAAGAVEVVQGISK SEKQARKDGLKGHEITASKVGGALVDVGKVAVTTAMIGAATALLPATASIGAVVGVGIIA GWTANTIDKKLGVTSEMKKGVNSLIKSARGWFS >gi|307679014|gb|GL456783.1| GENE 95 97976 - 98674 353 232 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|255972951|ref|ZP_05423537.1| ## NR: gi|255972951|ref|ZP_05423537.1| predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis X98] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis X98] # 1 232 1 232 232 337 100.0 5e-91 MIKNYVPTKYKNYNKKPFTKQSAKKVLSAYLLLLISLIVIQIFDKKKETHQNFLSIQSIG AVILFVLSLIVYLLFDKKNIQKYLALIMYFSSILFTFFAIAFFSFLAENPVKVFIESISL LFILLIFLEFVYMLIVFISLKINNLNLRDMVAMFIMNGVSLLGIGLIVLSEAKDNISFGV FGATAIIAGLLILATFHYPRVLHYWKRQSDIDSNVSVYGNSIEMMKNKRTKK >gi|307679014|gb|GL456783.1| GENE 96 98700 - 99398 851 232 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315155921|gb|EFT99937.1| ## NR: gi|315155921|gb|EFT99937.1| hypothetical protein HMPREF9503_01688 [Enterococcus faecalis TX0043] # 1 232 1 232 232 343 99.0 5e-93 MSDGTLVIKKAGKWLSKFDKLTGIDNYMRKGKDFTRLSTSGGLKQFTDLGDSLLDKLKLV DKNVVLKGSKQAFKESVKGIGKGTLKSAGGALKKSVSFGINGIVKDAKALVNAKGAGKIV PGLNIALGAVDVVQGISKSEKQARKDGLKGHEITASKVGGALVDVGKVAVTTAVIGTVGS AIAVAGGPVWAVVLGGIAISAGLEEINKRTGATNMAKKAINSMVKGVSAWFK >gi|307679014|gb|GL456783.1| GENE 97 99386 - 100102 120 238 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229550172|ref|ZP_04438897.1| ## NR: gi|229550172|ref|ZP_04438897.1| membrane protein [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis X98] hypothetical protein HMPREF9498_03262 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9521_03121 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9504_01462 [Enterococcus faecalis TX0102] membrane protein [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis X98] hypothetical protein HMPREF9521_03121 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9498_03262 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9504_01462 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9501_00133 [Enterococcus faecalis TX0027] hypothetical protein HMPREF9497_01339 [Enterococcus faecalis TX4244] hypothetical protein HMPREF9502_01340 [Enterococcus faecalis TX0031] hypothetical protein HMPREF9503_01687 [Enterococcus faecalis TX0043] hypothetical protein HMPREF9508_02047 [Enterococcus faecalis TX0312] putative membrane protein [Enterococcus faecalis 62] membrane protein [Enterococcus faecalis OG1RF] # 1 238 1 238 238 406 100.0 1e-112 MVQIKEMLKNFIPSTYKKVSRKSFTSKSFLSIIGAFVFILGILFLFSISLDMKETLNTSL NDKLIYLSYGTICANLVGLVLFRKEKLQKFVIIIPYITCILMFYIIMAIGASMTDNPVSD LKLGMVGSNLLWIIGVLINTVLVWKSVKTSHFKIRDKYANYFINSLSIAGIIFFFVSKVI NNFTYAYTGMVFLIATLQILATFHFPRVLRYWKKEPKNENASIYGNSIEMIKNKRTKK >gi|307679014|gb|GL456783.1| GENE 98 100360 - 100788 681 142 aa, chain + ## HITS:1 COG:no KEGG:SGGBAA2069_c05030 NR:ns ## KEGG: SGGBAA2069_c05030 # Name: not_defined # Def: hypothetical protein # Organism: S.gallolyticus_gallolyticus # Pathway: not_defined # 1 142 1 142 142 90 38.0 1e-17 MIEKVSLEMNNLVYIEKRATTDQLVDLILQSEELTYEEGFYKNGPTMIELKPTELSEEEQ TYKFYIPVNEPVESGEIFTVENIHYDHLVRKRIPFDDELGANIEEMTDYLLEQKIEFDDK LLLVMTLVYDEYWVDVLIPTKE >gi|307679014|gb|GL456783.1| GENE 99 100797 - 101246 408 149 aa, chain + ## HITS:1 COG:no KEGG:GALLO_0570 NR:ns ## KEGG: GALLO_0570 # Name: not_defined # Def: hypothetical protein # Organism: S.gallolyticus # Pathway: not_defined # 6 149 7 151 153 77 33.0 2e-13 MRKTIGYKQSLHYQNVISRYYVTTSEEMGRCLEDALETIFEADYSLSDSFFYSMNSDIRE EELLIQVFLPVNEECQENLPAEYRFQSYFQVNNMLATRAKGDKLSEFSKALEELITIVVQ EDLTIVSPIFYCPQVIDNKVYTDLMIGIK >gi|307679014|gb|GL456783.1| GENE 100 101320 - 101820 211 166 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229550169|ref|ZP_04438894.1| ## NR: gi|229550169|ref|ZP_04438894.1| membrane protein [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis E1Sol] predicted protein [Enterococcus faecalis X98] hypothetical protein CUI_2506 [Enterococcus faecalis PC1.1] hypothetical protein HMPREF9498_03259 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9504_01465 [Enterococcus faecalis TX0102] membrane protein [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis E1Sol] predicted protein [Enterococcus faecalis X98] hypothetical protein CUI_2506 [Enterococcus faecalis PC1.1] hypothetical protein HMPREF9498_03259 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9504_01465 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9500_00095 [Enterococcus faecalis TX0017] hypothetical protein HMPREF9501_00136 [Enterococcus faecalis TX0027] hypothetical protein HMPREF9497_01342 [Enterococcus faecalis TX4244] hypothetical protein HMPREF9502_01343 [Enterococcus faecalis TX0031] hypothetical protein HMPREF9503_01684 [Enterococcus faecalis TX0043] hypothetical protein HMPREF9508_02050 [Enterococcus faecalis TX0312] hypothetical protein EF62_1790 [Enterococcus faecalis 62] membrane protein [Enterococcus faecalis OG1RF] conserved domain protein [Enterococcus faecalis TX1467] # 1 166 1 166 166 308 100.0 9e-83 MRLTKADGYKKIGIGLGVIFVTLICLVWFYFSLYKNPVTSNIIFFVFLTVVAILISALSL LKLICMFAFLIIETGINETKYIRKYGGILYRMDSHGLSYHEKGFLIVRSWSEVIDVGLFR QMESEVIYNYQIKFSDDDRHTFDLRGNYPTIAFKEKIEEFWFKYNS >gi|307679014|gb|GL456783.1| GENE 101 101978 - 102892 630 304 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 1 303 1 306 306 247 43 6e-64 MYDVIIIGAGPAGMTAALYASRSNLSVLMIERGAPGGQMNNTAEVENYPGFDSIMGPELA YKMYENVEKFGTENAYGIVMGIEDHGSYKEVICDDKSYEAKAVIIATGCEHRKLGVKGEE EFAGRGVSYCAVCDGAFFKNKRLVVVGGGDSAVEEAIYLTQFASEVVIVHRRDELRAQKI IQDRAFANEKISFVWDTVVEEIVGNEMVVTGVKARNVKTDEVSEIEANGVFIYVGLDPLT EPFKKAGITNEAGWIETDQEMRTKIPGVYAIGDVREKTLRQITTAVGEGGIAGQQVFNYI EELK >gi|307679014|gb|GL456783.1| GENE 102 102935 - 103396 650 153 aa, chain - ## HITS:1 COG:no KEGG:EF1339 NR:ns ## KEGG: EF1339 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 153 1 153 153 291 100.0 8e-78 MVYTVDFKEVATIGLESSPVAPALAGLRANEARYFWNKYKHRFTTVPASEAPETLAWIEK ILLERELHFPYKPLEISSFTLDGIKMAYVFYENGLAVNVMYTLAEEGKRAVGFKLSDGMA IPAEFEGKFKFARQKSKLAGTIRGSYFVIKGTY >gi|307679014|gb|GL456783.1| GENE 103 103593 - 104093 595 166 aa, chain - ## HITS:1 COG:no KEGG:EF1340 NR:ns ## KEGG: EF1340 # Name: not_defined # Def: pheromone cAM373 precursor lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 166 1 166 166 288 99.0 4e-77 MLKKPFLLFFSLLGAIFILASCGIGKDAVTDTKYKVSLQQAAEIYEKEAGNSKPLVNVQF DTEPASDYSYIFTNETETLYVNPETGKVTKNTEANQLGENETAFSAAEVKELGAVNDVLA KAKKEVGGLSPRILTWKLTKNNNKLVYTVDVKTTTADEKVTLDANK >gi|307679014|gb|GL456783.1| GENE 104 104212 - 106551 2747 779 aa, chain - ## HITS:1 COG:L119891_1 KEGG:ns NR:ns ## COG: L119891_1 COG1136 # Protein_GI_number: 15672696 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Lactococcus lactis # 1 287 3 289 290 230 42.0 8e-60 MLELKDIKKYYTVGGTTTKALDGVSVAFRKQEFVAILGPSGSGKTTMLNVIGGLDNYDSG DLIINGKSTKNFKEAHWDAYRNNSIGFIFQSYNLISHQGILDNVELGMTLSGISKAERRQ KAEDALIRVGLKDHIHKKPSQLSGGQMQRVAIARALANDPDILLCDEPTGALDSETSLQI MALIQELSKEKLVIMVTHNPELAHEYADRIIEFSDGQIRHDSRPHIEHEKKEPFELKRTK MKFTTALRLSFNNIRTKKGRTFLTAFASSIGIISIAIVLSLSTGFQKQIDKTQSETLAQF PITISKIATDQDPESFNNQDKKGTFPKEKEVTAKISDADRAQHTNLIDQKFIDYVNHIDP ELSNNIGYTRLVNMNLLREINGKAQAVKFSNDAPDGQSNAMASMMAAQTGVGVSAFPKQL ENGKNNFLKDNYSLLEGNYPEKETDVVLIVDSNNTTNINALKNLGFDVKDNQKIAFSDIV GTKMKLANNNAFYTKLPTGNFIPNQDLQAVYDNPENTELTISGILRIKDSSTMNLLAPGI AYSDALSTNMIAKNKTSDIVKAQEASNTNVMTNETLDASAKENLLSYLGANEIPSSIMIY PNDFKSKDKILDYLDAYNKGKDKKDQIIYSDLAGTMTRLTGGLMDAITYVLIAFAGISLV TSMIMIGIITYTSVIERTKEIGILKALGARKKDITRVFDAETAILGVASGILGVVIAFLA TFPINAVLYNLTDLENVATLNPIHGIILIVISTILTMIGGHIPARMAAKKDAAVALRAE >gi|307679014|gb|GL456783.1| GENE 105 106697 - 107185 409 162 aa, chain + ## HITS:1 COG:no KEGG:EF1342 NR:ns ## KEGG: EF1342 # Name: not_defined # Def: MarR family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 162 1 162 162 252 100.0 3e-66 MDKEKHSSNLDISVFTEIFSYMSQLLFKDLDLEDLKLTKLDMLILLIVATNEGISMTELA NQVGTSKVQVSRSIAGLEERAIVQRRHNQENRRVVNVYTTKEGEKLFKQKENQVKQQLSE TLSVLSLEDYQEVNQHFLAVMKILSNYQALRRKTCKENNAKK >gi|307679014|gb|GL456783.1| GENE 106 107223 - 108086 706 287 aa, chain - ## HITS:1 COG:SPy1296 KEGG:ns NR:ns ## COG: SPy1296 COG3833 # Protein_GI_number: 15675249 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type maltose transport systems, permease component # Organism: Streptococcus pyogenes M1 GAS # 8 286 2 278 278 327 67.0 2e-89 MAKAKSYQKKQRTALTSVYIILTILAVFWMFPIVWIILTSFRGEGGAFVPYIIPKTFTLE NYKVLLTNQTGNFPFVRWFLNTLFVSIASCLLSTFITIAMAYALSRLRFRLRKPFLKVAL VLNMFPGFMSMIAVYYILKALNLTESLFALILVYSAGSGLGFYIAKGFFDTIPMALDESA MIDGANKWQIFTKITLPLSKPIIVYTSLTAFMGPWMDFIFAKVIMGDKVENYTVAIGLFS MMTKSTANSLFMAFTAGCVLIAIPITILFILMQRFYVEGVTSGSVKG >gi|307679014|gb|GL456783.1| GENE 107 108090 - 109433 1085 447 aa, chain - ## HITS:1 COG:SPy1295 KEGG:ns NR:ns ## COG: SPy1295 COG1175 # Protein_GI_number: 15675248 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Streptococcus pyogenes M1 GAS # 10 447 11 450 453 541 67.0 1e-154 MFKKKKAQTSFREVFKKGDFATKLSFLVMGAANFANKQWLKGIIFLTAEIGFIYWLIRNG FHALMMLGTLGTQQQGLVYDDSLGIEVLKEGDNSMLLLLFGIAAILVCLSLIILYVINLK SARHLYELKTAGKKIPTTMDDLRSLLNERFHATLMTIPLLGVLFFTILPLLYMISIAFTN YDHNHLPPKNLFTWVGLANLGNVITGDMASTFFPVLGWTLIWAVFATATCFFFGIILALL INTKGLKYKAFWRTIFVITMAVPPFVSLLIMRNLLNGSGPINALLLNWGLIDSSIPFLTD PNWAKLTIIVVNMWIGIPATMLISTGIIQNLPEDQIEAARIDGANKWQIFKSITFPQILF VMTPALIQQFIGNINNFNVIYLLTGGGPANSNFYGAGSTDLLVTWLYKLTVDTMDYNLAS VIGILIFILSAVFSLIAYTRTNSFKEA >gi|307679014|gb|GL456783.1| GENE 108 109519 - 110769 1672 416 aa, chain - ## HITS:1 COG:L128695 KEGG:ns NR:ns ## COG: L128695 COG2182 # Protein_GI_number: 15673665 # Func_class: G Carbohydrate transport and metabolism # Function: Maltose-binding periplasmic proteins/domains # Organism: Lactococcus lactis # 4 415 3 410 410 279 41.0 8e-75 MKANWKKILMGGILLSASAVLLTACGGAEKTKAENESGSANKAAGDVKLWVDTEYMGVFK KVVADFEKENPDIKVNLTAGNSADAKKDIAKDPKAAADVFMMPHDQIGQMAEAGLIYPNT KYEKEVKENNIDSAVAGVTWKDKVYAYPYAVESQVLYYNKDTYSPEEIKTWKSLTEKGKI GTNFGEDGANYIFGPLFMSNGDYLYGENGEDPKGTNFNNQQGIEVLQWIADQKNNPGVIQ SNTEALSNLGSGKTDAFLSGPWSKNDVEKALGDKMGAAAYPTIDFGNGEKQIKAFLGVRS FAVNQQTQAPLAAMTLANYLTSEKAQMTYFKEIGFVPSNKKLQTNEEITQDTVAKAILEM AQPTHSVVMPKIPEIVSFWPAMDAVINDTYKGNIKPADYQAKLDKLVQDTSKEAKE >gi|307679014|gb|GL456783.1| GENE 109 111029 - 112795 1617 588 aa, chain + ## HITS:1 COG:L128694 KEGG:ns NR:ns ## COG: L128694 COG0366 # Protein_GI_number: 15673664 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Lactococcus lactis # 1 587 1 584 584 710 58.0 0 MNTAAIYHRPESEFAYLYTEETMHIRLRTAKGDIASVQLVQGDPYLLGKEKWYQQSLTMK KLVSTELYDYWFIALSAKFKRLSYAFTLVGTDGLTAFYGEHGIYPLEEKYLAMANNYFRM PYFHEIDRFKAPEWVKETVWYQIFPERFANGDPANDPEGTLPWESKRPDRQDFFGGDLQG VLDHLDYIEDLGVNGLYFCPIFEAFSNHKYDTIDYLKIDPAFGDGATFKRLVEECHRRGI KIMLDAVFNHMGDTSPQWQDVLKNGQDSIYADWFHVNEFPASYEESADFEEASNITYDTF AFTPHMPKLNTANPEVQAYLLEIARYWIEEYDIDAWRLDVANEVDHAFWKKFRQTCDDAK EDFYILGEIWHSSQSWLQGDEFHAVMNYAYTDAIMGYFVKQELSLEKMLSEMNNQLMLYR QQTNQMQFNVLDSHDTPRLLHETKEDKELMRQVLAFTYIQPGVPCLYYGDEIGMTGDMDP DCRRCMVWEENQQDLDLKEFVKSLIALRKKYAAVFSGGTIDWTGTSFETGLIRLACRLEE QTIYGIFNTGQETQFVDRTDREVLLSSSIEIASEQIMVLPKGFLLYQA >gi|307679014|gb|GL456783.1| GENE 110 112823 - 114448 1644 541 aa, chain + ## HITS:1 COG:SP0342 KEGG:ns NR:ns ## COG: SP0342 COG0366 # Protein_GI_number: 15900272 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Streptococcus pneumoniae TIGR4 # 1 539 1 534 535 689 63.0 0 MEKHWWQEVVVYQIYPRSFKDSNGDGIGDLPGIIEKLDYLETLGIGAIWLSPVYQSPNDD NGYDISDYEAIMTEFGTMADMDRLIEEAKKRKIEIIMDLVVNHTSDEHRWFIEAKKSKEN PYRDYYVWADPASDGGAPNRLKSAFSGSAWTFDEASGQYYLHLFSKKQPDLNWENQQMRQ SVYEMMNFWIDKGIGGFRLDVIDLVGKIPGEEITANGPHLHRYLQEMNAATFGGKELLTV GETWGATPEIAKMYSSPERHELSMIFQFEHMSLDQQPGKEKWDLQPMEVAKLKQVFAKWQ TELGNDGWNSLFWNNHDLPRMISRWGNDQEYWLESSKLFAILLHMMKGTPYIYQGEEIGM TNTPITDIREARDIETINMYHEYLEKGYSKEEILLKINTKGRDNARRPMQWTAEKNAGFT TGTPWIDVNPNYQTINVAAALADKNSLFYTYQEMIRLRKEHPLIVWGNFELLETVDEVIS FYRTYGEERWLVVTNFSDKVQPFSADVHVEQVMIENMPTDVTALADYSLAPWQAFVVKVS Q >gi|307679014|gb|GL456783.1| GENE 111 114450 - 116063 1637 537 aa, chain + ## HITS:1 COG:L128691 KEGG:ns NR:ns ## COG: L128691 COG0366 # Protein_GI_number: 15673660 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Lactococcus lactis # 9 537 13 544 545 617 57.0 1e-176 MDQWWKNAVGYQIYPRSFKDSNGDGIGDLQGIIEKLPYLKELGVDFLWLNPIYTSPNVDN GYDIADYQGIQPEFGTMEDFQELLDQAHQLGLKIILDLVVNHTSDQHPWFVEAKKSLDNP YREYYLWADATPDRMPNEWQSFFGGSTWTYDEGTKQAYFHVFAKEQPDLNWKNPKVREEI YAMIRWWLDLGIDGFRLDAISHIQKEPWDFKITTNPWAPFMNVKGIEDYMLDLKAIFAEY DIMTVGEASGVSSKKAVEWTNDAGYLNMIFELEHNVREGKPGEERLNILGYKKVMARWQK HLGTEGWNALYVENHDNPRINSILGNETSHSAKAIGTIALLLRGTPFIYQGQEIGMVNYP FQQIDELDAKDSHNHYRLLIENGYDAKQALKEVAHWTRDHSRTPMQWTSQEASSFTSGHP WLAIHPNFKEINVADQETDAQSVLNYYKKLIALRKENPVFTDGQFELLAPNHPSVFAFLR KTTEATALVIVNLSGEKCQFDLPNKLLGRKWQQLLGNQDFTVKKRMQLAPYQAGVFQ >gi|307679014|gb|GL456783.1| GENE 112 116233 - 116814 738 193 aa, chain + ## HITS:1 COG:L85237 KEGG:ns NR:ns ## COG: L85237 COG3548 # Protein_GI_number: 15672844 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Lactococcus lactis # 1 187 1 184 188 129 38.0 3e-30 MPKTRVEAFTDAVIAIILTLLILELKIPEKADWSALTQSGHKIIIYLISFVTLLIYWNNH HHLFQSVRKIDGRVLWMNNLLILTLTFFPFVTGWVGEHPFSWPPQALYGLVVLGADVAYY LVVRALIQANGPKSEVQRLFGHYPKLTLSIVLNIIALIVGKLVAPIAVLIIDTIVLVMWF IPERKAEIKEILK >gi|307679014|gb|GL456783.1| GENE 113 117290 - 119899 2785 869 aa, chain + ## HITS:1 COG:lin2836 KEGG:ns NR:ns ## COG: lin2836 COG0474 # Protein_GI_number: 16801896 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Listeria innocua # 17 869 13 856 856 898 54.0 0 MNKKTMDMRKATKDQELRKLALLSERELMMELRTSEKGLSNEDAEKRLEEFGPNEVSAQK PTPAIILFLSAFKDPFVYVLALLMVVSTLTKDFEAAIVMGVMILASVLIAFIQEYRSQKA SLDLKELIENTAAVTREGITKEIPMDEIVPGDIVTLATGDMIPADAVLIWTKDLFVNQSS LTGESMPVEKFVDAGVDRQQTEVSALDMQDLVFMGTDVLSGQGKAIILKTGQHTFFGDIA KNATTQRGKTSFDLGLAKVSKFLLRMVMILFPIVFLINGLTKGAWGEAFFFAIAVAVGLT PEMLPMIVTSNLAKGALSLSKHKVIVKELAAIQNLGGMDVLCTDKTGTITEDRVVLVQHL NPLGDLSDEVLNLAYLNSSYQTGWKNLMDIAVINFYEEHQWKTPFKNVTKIDEIPFDFSR RRLTVVVNADDHQLMITKGAVEEMEEVCTHAQINGEIVPLSSAVREELRRVNVQMNKQGM RVLAVAVKKDVHKEAVYSVEDEKEMTLIGFMGFLDPAKESAVSAIRSLHEHGVNVKVLTG DNDIVAKKVCKDVGIEVSHVLLGSQIEAMTDEELRAQVEETNLFAKLNPMQKSKIIELLQ AKGHTVGFMGDGINDAPALRKADVGISVDTAADITKDASSIILLEKSLNVLESGVIEGRK VFSNMMKYIKITISSNFGNVFSILVASAFLPFLPMLSLQLLIQNLIYDVAQLTIPWDNVD EEELLSPVRWETNGLAKFTVCIGPVSSIFDILTYLVMWFVFSANSLATQHLFQTGWFMVG LVSQTLVVHMVRTRKIPFIQSRASMPVMLSSLGAILLGFLIVATPIREVFDFVKLPANYW PWFFGIIIAYMLTVEVAKRLYIKITKEWI >gi|307679014|gb|GL456783.1| GENE 114 120498 - 121613 1715 371 aa, chain + ## HITS:1 COG:lin1044 KEGG:ns NR:ns ## COG: lin1044 COG1071 # Protein_GI_number: 16800113 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit # Organism: Listeria innocua # 1 371 1 371 371 527 70.0 1e-149 MAKAKKQKPIDFKELMAKVDADFPTFQILDQDGKIVNEDLVPDLSDEELVELMTRMVWSR VLDQRSTALNRQGRLGFFAPTAGQEASQLASQFAMEKEDYLLPGYRDVPQLVQHGLPLRE AFLWSRGHVAGNYYAEDLNALPPQIIIGAQYIQAAGVALGLKKRGKENVVFTYTGDGGSS QGDFYEAINFAGAYQANGVFIIQNNGFAISTPREKQTAAKTLAQKAVAAGIPGIQVDGMD PLAVYAIAKEARDWSAAGNGPVLIETLTYRYGPHTLSGDDPTRYRSKEMDDEWVQKDPLT RFRKYLTDKGLWSEAKEEEIIEKTKEEIKVAIAEADKAPKQKVSDFLKNMFEVQPQTIKE QIAFYEAKESK >gi|307679014|gb|GL456783.1| GENE 115 121616 - 122593 1343 325 aa, chain + ## HITS:1 COG:lin1045 KEGG:ns NR:ns ## COG: lin1045 COG0022 # Protein_GI_number: 16800114 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit # Organism: Listeria innocua # 1 325 1 325 325 498 76.0 1e-141 MAQKTMIQAITDALALELEKDENVLIFGEDVGNNGGVFRATEGLQEKFGEDRVFDTPLAE SGIGGLAFGLALQGYRPVPEIQFFGFVFEVFDEIVGQMARTRYRMGGTRNMPITVRAPFG GGVHTPELHSDNLEGLIAQSPGVRVVIPSNPYDAKGLLISSIRSNDPVVYLEHMKLYRSF REEVPDEAYEVPLDKAAVTREGTDVSIITYGAMVREAIKAADSLAKDNISAEIIDLRTVA PLDVETIINSVEKTGRVVVVQEAQKQAGVGAMVVSEISERAVLSLEAPIGRVSAPDTIFP FGQAENIWLPNAKDIEAKAREIVEF >gi|307679014|gb|GL456783.1| GENE 116 122736 - 124025 1617 429 aa, chain + ## HITS:1 COG:lin1046 KEGG:ns NR:ns ## COG: lin1046 COG0508 # Protein_GI_number: 16800115 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Listeria innocua # 3 428 113 543 544 469 62.0 1e-132 MAYQFKLPDIGEGIAEGEIVKWFVKPGDTINEDDTLLEVQNDKSVEEIPSPVTGTVKNIV VPEGTVANVGDVLVEIDAPGHNSAAPAAAAPATDAPKAEASAPAASTGVVAAADPNKRVL AMPSVRQYAREKDVDITQVTATGKGGRVIKADIDAFVSGGSQAAPATEAAATEAAPKAEA AAPKAAPKAFTSDLGEMETREKMTPTRKAIAKAMVNSKHTAPHVTLHDEVEVSKLWDHRK KFKDVAAANGTKLTFLPYVVKALTSTVQKFPILNASIDDAAQEIVYKNYFNIGIATDTDH GLYVPNVKNANTKSMFAIADEINEKAALAIEGKLTAQDMRDGTITISNIGSVGGGWFTPV INYPEVAILGVGTIAQEPVVNADGEIVVGRMMKLSLSFDHRIVDGATAQKAMNNIKRLLA DPELLLMEG >gi|307679014|gb|GL456783.1| GENE 117 124033 - 125439 787 468 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 11 468 5 458 458 307 36 4e-82 MVVGDFAIELDTVVIGAGPGGYVAAIRAAEMGQKVAIIEREYIGGVCLNVGCIPSKALIA AGHHYQEAQDSSTFGVTAKGVELDFAKTQDWKDNTVVKSLTGGVGMLLKKHKVEIIEGEA FFVDENTLRVIHPDSAQTYSFNNAIVATGSRPIEIPGFKFGGRVLDSTGGLNLKEVPKKF VIIGGGVIGAELGGAYANLGSEVTILEGSPSILPTYEKDMVKVVTDDFKKKNVTIVTSAM AKEAVDNGDSVTVKYEVNGKEESVEADYVMVTVGRRPNTDDLGLEQAGVEIGERGLIPVD NQGRTNVKNIFAIGDIVPGAALAHKASYEAKIAAEAISGKKVAVDYKAMPAVAFTDPELA SVGMTVAEAKEAGIEAKGYKFPFAGNGRAISLDKTEGFMRLVTTVEDNVIIGAQIAGVGA SDMISELALAIESGMNAEDIALTIHPHPSLGEITMDTAELALGLPIHI >gi|307679014|gb|GL456783.1| GENE 118 125553 - 126539 919 328 aa, chain - ## HITS:1 COG:lin1114_1 KEGG:ns NR:ns ## COG: lin1114_1 COG4936 # Protein_GI_number: 16800183 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Predicted sensor domain # Organism: Listeria innocua # 15 117 13 115 149 107 42.0 4e-23 MTVELKNILDLEKWEKLQESLALSTRLAIILVDYKGRPVTKHSQVQPFCQLVRHSPELSK LCEKCDARGGLEAVRTGQPFIYRCHFNIVDMAIPIIVDDQYVGAIMAGEVLLEDHQEELE QVLTMNDAFIQEFLVTHQELYQQYPVLELADLEKSATLIADLSQYIISEAIKKDYLINTY KQSLQISSRKEELEPLNMIQKDIQQTLLTAQLTPSSAYQTKNKQLQPVLDALWENKSLRL NLQELADLVHLTPTYLSRLLKEEFGIPFSQFYRQLKITWAKQLLLETDKTIAQISEDLGF VEDSYFVRIFKQETGETPLKYRKRKNRA >gi|307679014|gb|GL456783.1| GENE 119 126700 - 127839 1513 379 aa, chain + ## HITS:1 COG:gldA KEGG:ns NR:ns ## COG: gldA COG0371 # Protein_GI_number: 16131783 # Func_class: C Energy production and conversion # Function: Glycerol dehydrogenase and related enzymes # Organism: Escherichia coli K12 # 1 372 14 375 380 283 42.0 5e-76 MRKALILPTKYVQGEDELLNLGYFVSTFGKKALLIANPADVDRVRPQLEETAKKFDITFV EGGFSGEVTREETKRLQNVGQKEQADCIIGLGGGKAIDASKVVAEGENLIIVPTIAAQDA PTSHSAVLYHEDGSFDDYAYFKQSPSVVMVDTKVVAKAPTRFLVAGMGDALSTYFEARAT HNSYSRVNASLPMGSREGLTPAASGTYAALAMAKLCWENLQEDGLKAKLACDANVVTESL NKIIETNILLSGLGFESGGLAAAHAIHNGMTVLPGAHSYLHGEKVAFATIAQLVLEDAAK DELEAVLDFSASVGLPLTLSDIGVDEITYEEALEVAKIACIPEESIHSMPFPIVVEEVAN AIIVADKVGQEYKTRHKLD >gi|307679014|gb|GL456783.1| GENE 120 127852 - 128250 594 132 aa, chain + ## HITS:1 COG:DRB0052 KEGG:ns NR:ns ## COG: DRB0052 COG3412 # Protein_GI_number: 10957457 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Deinococcus radiodurans # 1 127 1 127 133 85 41.0 3e-17 MKADILLVSHSKMITDGIKEMIEQMNASEEITIHSLGGTSDGSLGSDPMKIIDTINEADS DREFLIFADLGSAVLSSELAFDMLEEDQQKHYHLVDAPLVEGAFAAAITAGVSDDLTQIL AEAQNAGKKGWN >gi|307679014|gb|GL456783.1| GENE 121 128251 - 129234 1496 327 aa, chain + ## HITS:1 COG:L45677 KEGG:ns NR:ns ## COG: L45677 COG2376 # Protein_GI_number: 15672230 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Lactococcus lactis # 15 327 1 315 316 381 62.0 1e-105 MKKIINEPGKIVEEMLQGIVKSYGNLVHQVEDSRVIARNDSNKQVGLVSGGGSGHEPAHA GFVGDGMLNAAVLGDVFTSPTPDQILTGIQAADQGAGVLLIVKNYTGDILNFEMAKDMAD MEDIHVEMVVVDDDIAVEDSTYTAGKRGVAGTVLVHKILGHHARQGASLEELVSLGEKIV AATKTIGVALKAATVPEVGKPGFTLPEDEIEFGVGIHGEPGYRREKIQPSKELAKELVEK TLSSYEQQPQTVGVLVNGMGGTPLMEQFVFMNDVLTLLEDKGVQVTFHKVGNYMTSIDMQ GLSLTMIDLATKDWQTALESNVTTISW >gi|307679014|gb|GL456783.1| GENE 122 129247 - 129849 864 200 aa, chain + ## HITS:1 COG:lin2844 KEGG:ns NR:ns ## COG: lin2844 COG2376 # Protein_GI_number: 16801904 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Listeria innocua # 11 196 11 194 198 194 53.0 9e-50 MELTVQDIQTWLDNYSKVIEEKKDYLSELDTPIGDGDHGNNMARGMAEYKIAFDKKVPTT ITETFKVLSMALISKVGGASGPLYGTAFMNMTKATKDLETISSPEQLKEIVQQGLAGIQM RGKAEPGDKTMVDVWAPVAEVIGTEQFNEEKIEQFAEATKDWVAKKGRASYLGERAIGHI DPGAASSALLFEELVKVINQ >gi|307679014|gb|GL456783.1| GENE 123 129988 - 130755 781 255 aa, chain + ## HITS:1 COG:no KEGG:EF1362 NR:ns ## KEGG: EF1362 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 255 1 255 255 431 98.0 1e-119 MKKHVIVGCLLIVSSMFVSACGNSSDVTTEKTSVTKQVEATGQSTSSSVDQTKYDAIITE AKKLTAEGQYKESEEKLATIPVSDLGKPHYSIVKETVEKLNNQNNEGLKRQEEVAVEKQT KSSPAQTESLKPIPDEFAKWATTYLFYYPRGDQKQAGLIIEANGAVTQTNTNGEIYTGKA EISGASGTILSYDTTSYRPTTQPATKSITPNVKITVTWNNGGGVDVYYGYVSYSQRLALT DGIAVTDGVKEVWLS >gi|307679014|gb|GL456783.1| GENE 124 130828 - 131979 1415 383 aa, chain - ## HITS:1 COG:L13187 KEGG:ns NR:ns ## COG: L13187 COG3425 # Protein_GI_number: 15673554 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxy-3-methylglutaryl CoA synthase # Organism: Lactococcus lactis # 1 382 1 382 384 497 65.0 1e-140 MTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAE AILTKEDKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARSFEIKEACYGATAGLQL AKNHVALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVASEPRILALKEDNVMLTQ DIYDFWRPTGHPYPMVDGPLSNETYIQSFAQVWDEHKKRTGLDFADYDALAFHIPYTKMG KKALLAKISDQTEAEQERILARYEESIIYSRRVGNLYTGSLYLGLISLLENATTLTAGNQ IGLFSYGSGAVAEFFTGELVAGYQNHLQKETHLALLDNRTELSIAEYEAMFAETLDTDID QTLEDELKYSISAINNTVRSYRN >gi|307679014|gb|GL456783.1| GENE 125 132165 - 134576 2726 803 aa, chain + ## HITS:1 COG:L10433 KEGG:ns NR:ns ## COG: L10433 COG1257 # Protein_GI_number: 15673552 # Func_class: I Lipid transport and metabolism # Function: Hydroxymethylglutaryl-CoA reductase # Organism: Lactococcus lactis # 393 801 4 409 410 486 62.0 1e-137 MKTVVIIDALRTPIGKYKGSLSQVSAVDLGTHVTTQLLKRHSTISEEIDQVIFGNVLQAG NGQNPARQIAINSGLSHEIPAMTVNEVCGSGMKAVILAKQLIQLGEAEVLIAGGIENMSQ APKLQRFNYETESYDAPFSSMMYDGLTDAFSGQAMGLTAENVAEKYHVTREEQDQFSVHS QLKAAQAQAEGIFADEIAPLEVSGTLVEKDEGIRPNSSVEKLGTLKTVFKEDGTVTAGNA STINDGASALIIASQEYAEAHGLPYLAIIRDSVEVGIDPAYMGISPIKAIQKLLARNQLT TEEIDLYEINEAFAATSIVVQRELALPEEKVNIYGGGISLGHAIGATGARLLTSLSYQLN QKEKKYGVASLCIGGGLGLAMLLERPQQKKNSRFYQMSPEERLASLLNEGQISADTKKEF ENTALSSQIANHMIENQISETEVPMGVGLHLTVDETDYLVPMATEEPSVIAALSNGAKIA QGFKTVNQQRLMRGQIVFYDVADAESLIDELQVRETEIFQQAELSYPSIVKRGGGLRDLQ YRAFDESFVSVDFLVDVKDAMGANIVNAMLEGVAELFREWFAEQKILFSILSNYATESVV TMKTAIPVSRLSKGSNGREIAEKIVLASRYASLDPYRAVTHNKGIMNGIEAVVLATGNDT RAVSASCHAFAVKEGRYQGLTSWTLDGEQLIGEISVPLALATVGGATKVLPKSQAAADLL AVTDAKELSRVVAAVGLAQNLAALRALVSEGIQKGHMALQARSLAMTVGATGKEVEAVAQ QLKRQKTMNQDRALAILNDLRKQ >gi|307679014|gb|GL456783.1| GENE 126 134596 - 135648 990 350 aa, chain - ## HITS:1 COG:lin0948 KEGG:ns NR:ns ## COG: lin0948 COG0628 # Protein_GI_number: 16800017 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Listeria innocua # 1 332 1 330 348 277 50.0 3e-74 MSLYQKFIQNERLRRFCVLALIIFVLYLSRSMITTILLTFIFTYLAVRLVHFVQRYMKIP TIVIVLLTYALVVFLIYLAITKYVPVLVNQTTQMINSVVDFYQSPHTDTNQVLQFIDQYL EKSNLLSQLQNGASMILRYIQDIGAVGLSFVMSFILSFFFMIEKKQMADFSKLFLKSDFD WFFQDIYYFANKFVNTFGVVMEAQFFIAVVNTVITTLALAIIGFTQLPSLAIMIFILSLV PVAGVIISCIPLSFIAYSQGGLNDVIYILALITIVHLFESYVLNPKFMSSKTELPIFYTF VILLVSERLFGVWGLIVGIPVFTFFLDVLKVKPIRGLKRLPNVKKNSSAE >gi|307679014|gb|GL456783.1| GENE 127 135665 - 136870 1095 401 aa, chain - ## HITS:1 COG:lin1003 KEGG:ns NR:ns ## COG: lin1003 COG1434 # Protein_GI_number: 16800072 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 66 401 10 344 344 208 40.0 1e-53 MQFYGDLTFLGVYLLGLFFIPSWRKKKKEHDWLPWMFGWTVFMFFSYVLYLEIIRGTAFF LIPIAFFGLFALFYFKEKRRLLNGTLFNIFLVVLATYLGITAIRTNNYFLITLAIIALLA IFIALALGLYALIIFLYWNAVVVMRKEGRSLGNLLTLLLAIGLTLLLIYNFFFQSLLPTW LSLPLTIAPFILTYFAFVFYNFLTVSTLYQFNQPKYTQDYIVVLGSGLINGEIVPPLLQA RINKAIQFYKAQNRATLNPPKIVMSGGQGPDELLPESVAMKMYALTQGIPDDDILVEAHS KNTLENMRFSKETMIEDFGNANFQAIFTTNNYHLFRAGLFARMAGLKADGIGAKTAFYFL PNAFIREFIAIVVMYKRRHIIVCGLAAIGMVMLFLTGLIIQ >gi|307679014|gb|GL456783.1| GENE 128 137026 - 137226 316 66 aa, chain - ## HITS:1 COG:lin1401 KEGG:ns NR:ns ## COG: lin1401 COG1278 # Protein_GI_number: 16800469 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Listeria innocua # 1 66 1 66 66 98 81.0 3e-21 METGTVKWFNSDKGFGFITAENGNDVFVHFSAIQGDGFKTLEEGQAVTFEIEEGQRGPQA TNVTKA >gi|307679014|gb|GL456783.1| GENE 129 137524 - 138645 1244 373 aa, chain - ## HITS:1 COG:no KEGG:EF1368 NR:ns ## KEGG: EF1368 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 373 1 373 373 708 99.0 0 MANQKKDSLSTLFSEEVHGPFVTFLFNTHVAHQNVEKDSLVLKNFAKAAKTRFEKKFPEE KWAVFQEKIDALLADASFWRNGTASVSIILSPENTFVQRLDVPVDDQYYVDTIPYLLGLV KDKQFNYHYYLLALNRDSMKLYKVDHTTVTPVELPKDAPTDVVTALGDELTGGNLNFSTQ GSSNGSKEGVAYHSINTKDKEVEIDWVNYYQAVDTFLKDQLDNPEKLPLYLYALPENQTL FKKIAKNPYYDCSISVAASPAQATIQDIRSASEKIAAELTEKETASYNKLLDRKFLDQFT DISPAAADGKISHLFIATSLFVTENNEMSSEEYDRRKLLNTIAYQVIQNGGQVFVLDQKA APDEKSLAAILRY >gi|307679014|gb|GL456783.1| GENE 130 138982 - 139332 394 116 aa, chain - ## HITS:1 COG:lin2607 KEGG:ns NR:ns ## COG: lin2607 COG1396 # Protein_GI_number: 16801669 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 1 100 1 97 107 67 38.0 6e-12 MTLISRIKQLAQSKQLTLAQLERNVGISNGQIRRWDTSSPKVENLLKIADYFSVSLDYLM GRTQQTEINHQSPMTSTQKELHIHITTEELTEEEITQLEEEANRFLRFRKFEMTNS >gi|307679014|gb|GL456783.1| GENE 131 139524 - 140957 1220 477 aa, chain + ## HITS:1 COG:CAC3668 KEGG:ns NR:ns ## COG: CAC3668 COG0477 # Protein_GI_number: 15896900 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Clostridium acetobutylicum # 11 472 6 467 486 370 44.0 1e-102 MEKIKSYQEDSEVQKNRWWILVSVAMFTFMSTLDSSIVNIALPTISKEMSVPMNQAEWVV SIYLMVVCACLLLFGKIGDSFGKIKVYRIGTVIFTIGSLLCGFNQSLSFLLFARVVQSIG ASMTMATNSGIITEVFPLNERGRALGAVGAFVSLGAIAGPGIGGLILSNFSWSYIFWINV PVGLVTILIGEKFLPKDITKTKEKIDFSGFACIAIAIMTFFGGIFLGQESGFGSLQSYLL FIIAVIALGLFIMVERKRKSPLIKFAIFKNKIFTLSLLSAVLIFASNFFVNVVIPFYLQD ARKLSASYAGLLMMVFPLLMVVGAPLSGYLTDKIGPGILTFGGLLLLCCTSLMYMFLDMN SPIWYYVIATAIMGLGNALFQSPNNTMVMSSVEKQDLGVAGSMNSFARNLGMVIGIALST TILYRGMSEAYGERVTTYLANRPDIFIVGMRETFFVAFLLCVAAFILTILRFRKTTK >gi|307679014|gb|GL456783.1| GENE 132 141162 - 141836 873 224 aa, chain + ## HITS:1 COG:BH3178 KEGG:ns NR:ns ## COG: BH3178 COG2220 # Protein_GI_number: 15615740 # Func_class: R General function prediction only # Function: Predicted Zn-dependent hydrolases of the beta-lactamase fold # Organism: Bacillus halodurans # 1 222 1 224 226 228 52.0 5e-60 MELIGHGHSCIEIRLNDGTNLLFDPFINGNPLADVSLEDLHPDYILITHGHSDHIGDMLA IAQANKATIIAIAEVATYAQSQGVKAHGMNLGGRYVFPFGSVKFVPALHSSGYEIDGVMT YMGEASGIILEAEDKKIYHAGDTALFSDMRLFAKDKSIDVAFLPIGDNYTMGPEDALQAV SYLNPKITIPIHYNTFPVIQQNPAIFVEQVVGGKVLNPGETILV >gi|307679014|gb|GL456783.1| GENE 133 141846 - 143165 1385 439 aa, chain + ## HITS:1 COG:lin1611 KEGG:ns NR:ns ## COG: lin1611 COG4109 # Protein_GI_number: 16800679 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing CBS domains # Organism: Listeria innocua # 1 438 1 437 437 488 57.0 1e-137 MATKHDQILKHIEELPIGDRISVRSIAKSLSVSEGTAYRAIKDAENIGLVSTIQRVGTIR IERKLKKHIEKLTFGEVVRIIEGDVLGGSSGLDKVLNKFVIGAMTETAMTRYITPGSLMI VGNRQGVQKLALENGAAVLITGGFETSEEIAQLADRLGMPVLRTTYDTFTVATMINRALS DQLIKKDILLVSDIYTALEKTNYLLTTQTIADYQALSESTHHSRFPVVNKKLRLVGIVTA KDVIGKSEHLTVDKVMTKDPNVVKKMMSVASVSHQMIWDGLEVMPVVEDDLALVGIVSRQ DVMKAMQLVQRQPQIADTISDQISGEVMPVEENGKETTRFRFSVAPQMVNSVGTISFGVL SEIISNVTQRTMLMNQKRNVLIEQVNLHYLRLIQLESELDIRPRILEIGRRSAKLDIEVY LENVIVAKAIVVCQVMERT >gi|307679014|gb|GL456783.1| GENE 134 143179 - 144132 926 317 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B [Streptococcus pneumoniae SP18-BS74] # 1 308 1 306 311 361 59 3e-98 MDVVKEIMAAIKQYETIIIHRHQRPDPDAIGSQVGLAELLRASFPEKNIYQVGGPVEGLE FLAEMDVITDDVYRGALVIVTDTANAPRISDARFSLGDQLIKIDHHPNDEPYGDLVWVNT NASSCSEIIVDFWQQHLAELTMTDNAARLLYAGIVGDTGRFLYPSTSAHTLAVAAQLRTF NFNAADLNRELDQMPLKVAKLAGYIYQNLEIDANGAARVVLPQSILNSYDIVDSETAAIV SMPGKIEDVLSWAIFVEQPEGYYRVRLRSKGPIINTIAKKHHGGGHPLASGANARDAAEI EVIYQEIQAACQEWAQK >gi|307679014|gb|GL456783.1| GENE 135 144246 - 144584 427 112 aa, chain + ## HITS:1 COG:lin0389 KEGG:ns NR:ns ## COG: lin0389 COG2824 # Protein_GI_number: 16799466 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism # Organism: Listeria innocua # 4 111 3 110 111 174 81.0 3e-44 MTEQLPNCPECGSAYAYEDRGLFICPECGHEWSPTEEVAEEGLVVKDSNGNLLADGDSVT VIKDLKVKGASGAIKQGTKVKNIRLVEGDHNIDCKVDGFGPMKLKSEFVKKN >gi|307679014|gb|GL456783.1| GENE 136 144645 - 144956 440 103 aa, chain - ## HITS:1 COG:no KEGG:EF1375 NR:ns ## KEGG: EF1375 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 103 1 103 103 157 100.0 1e-37 MLQPYFAFGVPLFLLVLYLLFALIHRQTTIHYLRFILLLISTFLMVFSFQVLQESWTINP ETLKDAAYSPQWLWIPLGIGLILTLYNAWHGLRTMIKYKTDKH >gi|307679014|gb|GL456783.1| GENE 137 145099 - 146280 847 393 aa, chain + ## HITS:1 COG:L188881 KEGG:ns NR:ns ## COG: L188881 COG4767 # Protein_GI_number: 15673730 # Func_class: V Defense mechanisms # Function: Glycopeptide antibiotics resistance protein # Organism: Lactococcus lactis # 1 241 1 236 354 166 43.0 6e-41 MAVYSEPIKWPIIIFPFLAFFISGALLIYEYRKYGSFVWTRAMILYSFVFYLLCAYFLVI LPLPSRAEVAQYTGPTMELRPFHFISGILNETVFSLKDPSTYLPALKQHAVLEPLFNVLL VLPFGVYLRYYFKCSFLKTVLASFLLSLFFELTQLSGLYFIYPRSYRLADVNDLINNTVG GIVGYWLTPLFTFLLPTREEIDATSYEKGQTVSLLRRFFAWGIDWLVIGFVQGLLVFGLN FIPAYKNWATNYPIFSDRMWFFIMVFAVFIVMMKLTNGQTLGKKVVRIRVVETGHEKIRL KALFVRYGYLYFVYGLISIYLANATDLLNSSNRMLQMVSLLLYLFCLILYLLFLINVLLT LIRKKRRLFYEKASHTYTVSTLEVAKTKESAGE >gi|307679014|gb|GL456783.1| GENE 138 146343 - 147692 1589 449 aa, chain + ## HITS:1 COG:L0340 KEGG:ns NR:ns ## COG: L0340 COG0513 # Protein_GI_number: 15672392 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Lactococcus lactis # 4 447 3 445 446 554 62.0 1e-157 MPSFKQFQFQPFINEALAEKGFEEPTEVQEKLIPIIKKGKSVIGQSQTGSGKTHTFLLPL MDKVKPTIDEVQIVITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQLNKLK HQQPHVVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLPEKLQ MLVFSATIPEKLRPFLKKYLENPVIEHIKPKAVISETIDNWLISTKGKNSNQIIYQLLTI GHPYLAIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQYVVAT DLAARGIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAITLYSPADDEAITQIEQ LGVSFKPKEIKNGEIVETYDRNRRTKREKSREELDPTLIGLVKKKKKKIKPGYKKKINWA IEDSNKKKRKIERRQKDRSARKAKKNSSN >gi|307679014|gb|GL456783.1| GENE 139 148237 - 148920 516 227 aa, chain + ## HITS:1 COG:no KEGG:EF1378 NR:ns ## KEGG: EF1378 # Name: not_defined # Def: transcriptional regulator, putative # Organism: E.faecalis # Pathway: not_defined # 1 227 1 227 227 398 99.0 1e-109 MRRILVLTKNILVEQTFQQQLQHLNYEVFCTNCCEETIEHELTFFNYFDAIVLSETLSQN DCLRLLGSLSSLEKPIYRRSQSMCNKREAEIWQERGIIRWLGLKDSLEDIREKIDTVDQS FAEVTAELLDDQVKKIRFTKNEQRFLKILYQHAHEGLDRDQICRLLWQKEPDASTKSQLS FVCKRVKQKFSDAGMNEEIITTSWGKGYQINEQILPYLEQTLFETAQ >gi|307679014|gb|GL456783.1| GENE 140 149266 - 151908 3660 880 aa, chain + ## HITS:1 COG:lin1539 KEGG:ns NR:ns ## COG: lin1539 COG0013 # Protein_GI_number: 16800607 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Alanyl-tRNA synthetase # Organism: Listeria innocua # 1 877 1 874 879 1134 65.0 0 MKELTSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN PRITNAQKSIRTNDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAF DPEKLYVTVYPKDTEAKRIWRDEVGLSEDHIIDVEDNFWDIGAGPSGPDTEIFYDRGEEF LDIPEDDPENYPGGENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERVVSIIQ DAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGALPSNE GRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKVVRTEE ERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDEGLKVD HAGFETEMEAQRERARSARSKETSMGVQSALLTDIKVESKFVGYTELTHDSELFVIIQGD ALVNEASAGTAELIFAETPFYAEMGGQIADRGYVKNTAGEVVANVVDVKKAPNGQFLHKV EVLAPLAEGQIYQLQVDERMRTRILKNHTATHLLHRALKDVLGEHANQAGSLVAPGHLRF DFTHFGQVTSEELARMEAIVNEKIWEAIPVVTIETDIDTAKNMGAMALFGEKYGKEVRVV NIGDYSIELCGGTHVANTEDIGIFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKE IATLVKSPQLKEVVTKTEQLQQQLRDLQKENEQLAGKLANQQAGDIFKDVKDINGVRYIA AQVNVKDMNQLRQLADQWKQKELSDVLVLATAQDEKVSLLAAMTKDMNGKGLKAGDLIKA IAPKVGGGGGGRPDMAQAGGKNPAGIADALAEVENWLANA >gi|307679014|gb|GL456783.1| GENE 141 152111 - 152827 889 238 aa, chain + ## HITS:1 COG:lin1490 KEGG:ns NR:ns ## COG: lin1490 COG2384 # Protein_GI_number: 16800558 # Func_class: R General function prediction only # Function: Predicted SAM-dependent methyltransferase # Organism: Listeria innocua # 1 232 1 233 234 201 48.0 1e-51 MNENQLSKRLATVGDLIPRGSRLADIGSDHAYLPVALMLENKLSFAVAGEVVEGPYQSAK TQVSKSNLTDKIIVRLANGLDAIEPEDQIDVISICGMGGTLIRDILEAGRKKNRLTGKER LVLQPNIGEPTLRRWLMANDYSIIDETIVEENRKLYEIIVAEKTEQSVSYTDQELLFGPV LIKKQGPVFTKKWQRELKQRKTVLAQLAKASGEHIEKQAKLQQDQQLIEEVLANGCER >gi|307679014|gb|GL456783.1| GENE 142 152811 - 153929 1357 372 aa, chain + ## HITS:1 COG:SP1609 KEGG:ns NR:ns ## COG: SP1609 COG0327 # Protein_GI_number: 15901449 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 8 130 6 128 265 161 59.0 2e-39 MAVNGKTLIRRFNDYCPEWLAETGDPVGLHIGTLDKPIENVMVTLDVRPEVVAEAIEKQV DLIIAKHPPIFRPVKRLTTDNFQEKMYADLLKHDIAVYAAHTNMDIIDNGLNDWFCELLG IKQTTFLTKTHTVPYKKLAVFVPIDEAPQMREALGLAGAGAQGDYSKTSYSLIGTGRFTP TQGANPTIGEIGQESVVQEAKIEVIFPETKQEQVLAAMLQAHPYEEPAYDVYTIENQSKE FGLGRVGVLDKPVRLSDFVQQVKEAFQLDGLRVIAKDDTKMIQRVAICGGSGEKFYHDAL RKQADVYITGDVYYHTAHDMIAEDLPVIDPGHYIEALCKPKLVELMNQWKQENEWAVSIF ESEANTNPFRFK >gi|307679014|gb|GL456783.1| GENE 143 153959 - 155188 1809 409 aa, chain + ## HITS:1 COG:L60596 KEGG:ns NR:ns ## COG: L60596 COG2195 # Protein_GI_number: 15673792 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Lactococcus lactis # 2 407 3 408 413 538 66.0 1e-153 MYENLLPRFLRYVKTETRSDATSTTTPSTQTQVAFAQTLKKELEELGMSDVIYNETNGFV IATLPSNVEKDVRSIGFIAHMDTADFNAVNVSPQIVENYDGESTIPLDKEGKFTLNTKDF PNLKNYRGETLITTDGTTLLGADDKSGIAEIMTAMEYLINHPEIKHGTIRVAFGPDEEIG VGADKFDVAQFNVDFAYTMDGGPVGELQFETFNAAQAEITIQGKNVHPGTAKNTMINALQ LGIDFHNALPADEVPEKTAGEEGFYHLAAFAGTPEEATMTYIIRDHNREIFEARKAKIKE IQQTLNAPFDEERIKVDLFDQYYNMREVIEKDMSIVEIAKQAMEELSILPIIEPVRGGTD GSKISYLGIPTPNIFAGGENMHGRFEFVSLQAMEKATNVIIKIAELNAK >gi|307679014|gb|GL456783.1| GENE 144 155334 - 155600 267 88 aa, chain + ## HITS:1 COG:PA1960_2 KEGG:ns NR:ns ## COG: PA1960_2 COG3326 # Protein_GI_number: 15597156 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Pseudomonas aeruginosa # 4 72 74 141 170 58 43.0 3e-09 MLQWIVIIYFLVINLVLFSMMGYDKKQAKRGDWRIPERRLLTIGLVGGGLGGLMGQKKFH HKTQKPVFALCYSIGVIAMISCIYLTFK >gi|307679014|gb|GL456783.1| GENE 145 155620 - 156648 888 342 aa, chain + ## HITS:1 COG:lin2698 KEGG:ns NR:ns ## COG: lin2698 COG0392 # Protein_GI_number: 16801759 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Listeria innocua # 11 332 14 341 357 65 21.0 2e-10 MKGKVKIGLNMLLMIIVLGVIFYVMDNSLSDIFAQLMETSWLVLIAVIFFGVVYQFAEGR SIKEIARYFNKDFTTVDGFFTSCYVAFYRIISFGTGTLLSEIYFYKKKGIPVSKSVGITA LHMIMYKAAVIFLAIIGLIIQFSLFYENAPKMIPFILAGVILTLVIIAALLILSSSLKLQ VLLVKFANRWFKRPKLRDWVDNCNLQIYSLRAAVQTITQDHSALLRIFSWNVFKLLFWYI IPYIVLVENHPNIDLLLVMSFTSFAVILSGVIPTPAGIGPFEFVYLLLFKPLVGNVDAVA SVLLYRFGSFVLPFLIGLVYVAIEKRKSLRIEIEEIKRQTDE >gi|307679014|gb|GL456783.1| GENE 146 156789 - 157364 458 191 aa, chain + ## HITS:1 COG:BH3017 KEGG:ns NR:ns ## COG: BH3017 COG0746 # Protein_GI_number: 15615579 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin-guanine dinucleotide biosynthesis protein A # Organism: Bacillus halodurans # 7 189 5 197 198 81 30.0 7e-16 MAKIIADCTAVLLCGGKSSRMGFDKALLKIQGQYVILQTAEKLMELFEEVILVTNDSQKF PKAFRKCTIIQDMYLGKGPLGGIVTAMNYTQKAEVFVIACDIPTFSPKLVYQLASKRGQN QVTIFDFEGRQEPLFGFYRCSCLPTFQKQLAQNNYQVRQEFERLSVKTVQLSKENQLKNV NRKEELSQWYR >gi|307679014|gb|GL456783.1| GENE 147 157380 - 158204 727 274 aa, chain + ## HITS:1 COG:lin0912 KEGG:ns NR:ns ## COG: lin0912 COG2116 # Protein_GI_number: 16799984 # Func_class: P Inorganic ion transport and metabolism # Function: Formate/nitrite family of transporters # Organism: Listeria innocua # 1 267 1 268 270 230 49.0 2e-60 MDFFSSEEIVASLGDKAEMKGKLSFVRLCILGIMAGFCIALGYLAFIRITGTAPTEWGSF NNFLGGALFPVGLIALTFVGGELATGNMMVMTLGVLQKKVRVGALCYNWIVVLLTNCLGG FLVAYLFGHIVGLTEGAFLDKTVAVAQAKIADPPLVAFVSGIGCNIFVCLAVYLGALAKS YLGKMFGLWFPVMVFVVCGFQHVVANAFIIPAAIFSQSTTISWWDYLQNTLWVFLGNAVG GSLFMAVPLIFMTKPATVKPRVEKTIQTEELYGN >gi|307679014|gb|GL456783.1| GENE 148 158194 - 158775 570 193 aa, chain + ## HITS:1 COG:no KEGG:EF1387 NR:ns ## KEGG: EF1387 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 193 1 193 193 354 98.0 1e-96 MAIEIPNMIQIGSTGRNSGKTTLAEALIKQYQEVYPIYGLKIITISGQRGGCQRGTKGCG ICTSITAGYELVEEQETIGNKDTMKLLAAGCQKVFLLKVFQENLAEAIQQFLKAVPAQAL IICESNSLRNVVQPGLFLMMNNQNRQKESAKKVIDKADFCLLSAEIPKELRIYYQGEQLQ VSLKRGNKKECVH >gi|307679014|gb|GL456783.1| GENE 149 158763 - 159251 698 162 aa, chain + ## HITS:1 COG:TM0012 KEGG:ns NR:ns ## COG: TM0012 COG1905 # Protein_GI_number: 15642787 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase 24 kD subunit # Organism: Thermotoga maritima # 8 157 25 175 176 84 28.0 9e-17 MCALSLIEKEAIILENDADPQRILNILIELQFASEEGYIDQETAQLVAEHLHLTEARVYE IVSFYAILKTEPQAKYVLKICNSTPCHYTGGAMVAEVLETILEVPENQPTPDGLFMYHSI PCIGACDLGPVIKIKDTVFSQLTEEKIYQLIQHLQNDCYEGL >gi|307679014|gb|GL456783.1| GENE 150 159263 - 160561 1131 432 aa, chain + ## HITS:1 COG:TM0228 KEGG:ns NR:ns ## COG: TM0228 COG1894 # Protein_GI_number: 15643000 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit # Organism: Thermotoga maritima # 8 417 112 516 545 353 44.0 5e-97 MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGA AYPLGKKWRHLYHAKGTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSAK AGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENSA LLNSIEGKTGQPRVKPPHLADVGLYLQPTLVNNVESFASVPIILREGGQAFLEMGTADGG GTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRALKFIHFGGQSGPIGAVA TLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGTT RILELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFPEEFETTA ETEIYATSKGGW >gi|307679014|gb|GL456783.1| GENE 151 160564 - 163284 2654 906 aa, chain + ## HITS:1 COG:AGl347 KEGG:ns NR:ns ## COG: AGl347 COG3383 # Protein_GI_number: 15890285 # Func_class: R General function prediction only # Function: Uncharacterized anaerobic dehydrogenase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 7 905 30 946 973 747 42.0 0 MKTKLHTQTVTLSIDNQEVTVPKGTTILEAAKGLGVEIPTLCHLKELAPDGSCRMCVVEV EGGRRGGLTTACTAHCQEDMVVATHSEKVADSRRFILDLLLSNHKLECFSCGKNGDCQLQ QYALDYGIDATSFTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIA NRGFETKMMPSYGQAFDQSICESCGNCVSSCPTGALTAKDMKEYRKWETQKIPTTCPHCG TGCQMNLLVKNNRLVGVEPLDGPANKNLLCVKGKFASYKFVGSGDRLTEPLIKRNGIFEP ASWEEALTLVSSKFNEIKAENGPDALAGFSCSRATNEDNYVFQKMVRAAFGTNNVDNCAR VCHSASVHGLAQTLGSGAMTNPIADITEDVDMILLVGSNPEEAHPVIGAQIRQAIQRGTQ VVVVDPRKINLVKDSALHLQVQAGTNVAFANGMMHVILKEGLADRHFIEERTEGFSDLEK MVADYTPEKVAEICHIHPEDLIQAARMYAKAEKAPIIYCLGVTEHSTGTEGVMSMSNLAM LVGKVGKPGCGVNPLRGQNNVQGACDMGCMPYDFPGYQKVNNPEVIDKFEKAWHVPLNRN TGLTSTKVLPAATAGNVKGLYIFGEDPIVTDPDTGHVRQALESLDFLVVQELFMTETAAY ADVVLPGISYAEKDGTFTNTERRVQRVRKAVEPRGQAREDYEIFCEVMTRMGYPCAYESA KEIMKEISAVTPSFGGINYERLEKESLQWPCRSLTDPGTPIMHVGSFARGKGLFKAIPYK QAQELPDEEYPYLMSTGRMLYHYNTRAMTGRTEGINQIANHSYIEINAVDAQALGIQEGD KVEVHSRRGKIETYAAVGNRVFPQEVFMTFHFPDGNVNEITNAVFDDIATIPEYKVCAVA IKPVNK >gi|307679014|gb|GL456783.1| GENE 152 163302 - 164504 897 400 aa, chain + ## HITS:1 COG:BH3021 KEGG:ns NR:ns ## COG: BH3021 COG0303 # Protein_GI_number: 15615583 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin biosynthesis enzyme # Organism: Bacillus halodurans # 2 384 8 396 423 187 32.0 3e-47 MIELEEAREKMTQHMKSQCETEEVALLDSLGRISGETIFAETAIPHFPRAGMDGYAVRAV ETRGATAESPSCLKVVGSLVAGGSMFYCNQTNNCAIKITTGAFIPTDFDAVVPQEWTDFG QDHVKIFRSVTAGQNYAEIGEDIAFQQKILAKHQQINSRMIGLLAMQGIDKVVVLKRMKV GILATGSELVSLEEPLSIGKIYNSNLYMLAAFVKASGNEVIHLDHCSDDPEELAKRLIEI SPKLDVLITCGGVSVGEKDNLPLAIKRIGGTELFHFVNMKPGTPVMGSQFQETLILSVSG NPFAAMVNLHLFYWTLLATFFNCVELNLKERTVILAHELTPSRLRRFYRAKEIDGTVNLV TKSHLSSNLSNTLETNCLLEQPAGVLLKKGALVKVYYWQT >gi|307679014|gb|GL456783.1| GENE 153 165306 - 165788 356 160 aa, chain + ## HITS:1 COG:BS_ydiG KEGG:ns NR:ns ## COG: BS_ydiG COG0315 # Protein_GI_number: 16077663 # Func_class: H Coenzyme transport and metabolism # Function: Molybdenum cofactor biosynthesis enzyme # Organism: Bacillus subtilis # 2 150 8 159 170 145 51.0 4e-35 MNTQGEVHMVDISEKNDTQRTALAYGEIHMLEATAEAIQTQMIKKGEVLQVARVAGITAA KRTFEWIPLCHLVALTKCEIQFDWRNQTCLEVRCFTKTVGSTGVEMEALTGVQAALLTIY DMCKAIDRGMTMTNIGLLEKNGGRSGHFIRSSIKSKESDE >gi|307679014|gb|GL456783.1| GENE 154 165794 - 166759 754 321 aa, chain + ## HITS:1 COG:lin1039 KEGG:ns NR:ns ## COG: lin1039 COG2896 # Protein_GI_number: 16800108 # Func_class: H Coenzyme transport and metabolism # Function: Molybdenum cofactor biosynthesis enzyme # Organism: Listeria innocua # 1 321 4 333 333 249 39.0 5e-66 MKDAFNREIDYVRLSLTDRCDLRCTYCMPATGLCFLKKEQLLTDDEIIFLLRILAKEGIK KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNGMKLAREAQGLKEAGLDGINISLD TLDPEEFREITRVGQLRNVLAGLEQAIDVGLPNIKINTVARKELSEATIVELAEIAKKET VHLRFIEMMPIGLGKEHPGKQQEEVEAILTKYYGTLQPYQKPLGNGPASYYALKDFKGKI GFISALGHCFCETCNRIRITADGHLKTCLHSADGYSLKEALAKEQTAELLGIIKSGIACK PEKHLFLEQQGEQRFMSQIGG >gi|307679014|gb|GL456783.1| GENE 155 166762 - 167196 373 144 aa, chain + ## HITS:1 COG:CAC1991 KEGG:ns NR:ns ## COG: CAC1991 COG2258 # Protein_GI_number: 15895261 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 4 144 3 143 145 130 46.0 7e-31 MKTGEIIAINISPRRGTQKKEIPEVNLIKGFGLENDAHGGNWHRQVSLLSFEEITAFNEK GARVGNGAFGENIIVSGIDLRQLPVGTKMKIGDSELVVTQIGKECHKHCQIYARVGDCIM PREGIFAVVVTEGHIKKGDQLDVV >gi|307679014|gb|GL456783.1| GENE 156 167189 - 167671 241 160 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|134277849|ref|ZP_01764564.1| ribosomal protein S16 [Burkholderia pseudomallei 305] # 4 150 2 169 194 97 39 8e-19 MFKVGIVTLSDRCFQGLAVDQSGPLIREQLPVLYQVTKQTILPDEENQLVELLQEWSKTC DLILTTGGTGLSERDRTPEATLRVAERVVPGISEGLRQLSLEKTPFAMLSRGVSVQRGRT LIVNLPGSPKSVTEHLHFLLPVLPHALDLITNKKIIHDEE >gi|307679014|gb|GL456783.1| GENE 157 167675 - 168646 875 323 aa, chain + ## HITS:1 COG:SMc00519_1 KEGG:ns NR:ns ## COG: SMc00519_1 COG0303 # Protein_GI_number: 15965501 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin biosynthesis enzyme # Organism: Sinorhizobium meliloti # 8 323 10 320 340 100 27.0 4e-21 MKTIRTEEAVGLPLSHDITRIDYGKTKEVCFKKGHIVVQEDIPILLSLGKKHLFVSLDPA EIHEEEAATFLYNLLTDDSCQPSEVHEGKIVAKASTRGLLKVNREKLIALNEIEGLALST KVTNIEVQKDEKVAAFRVIPLTISKSQLEKARQFSTSEPLISVKPFKKIRVGIVTTGSEV YTGLVEDAFYPVLKAKFSAYPLVTIVKQEIVDDQPQKITVAIKKMLAQGLDLIVCTGGMS VDPDDLTPLAIKQTGAEIVTHGTPVLPGSMFLLAYKGEQTIIGLPGGVLFSEKTVFDLLL PRLMAKEVIKKSEIIDLSYGGYL >gi|307679014|gb|GL456783.1| GENE 158 168665 - 169465 965 266 aa, chain + ## HITS:1 COG:BS_yvgL KEGG:ns NR:ns ## COG: BS_yvgL COG0725 # Protein_GI_number: 16080391 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, periplasmic component # Organism: Bacillus subtilis # 4 262 3 257 260 159 38.0 4e-39 MSKQKKTVFLLSLFSLVALIAACTNQPQKETVSTKKEEITLAAAASLESVMEKKIIPAFE KEHPDIQVTGTYDSSGKLQMQIEKGLKADVFFSASTKQMNALVAEKLINKKSVVPLLENQ LVLIVPNQDQAKWHDFSDLKKAQMIAIGDPASVPAGQYAEEGLKALGAWSYVEKHASFGT NVTEVLEWVANASAEAGLVYATDAATNSKVAIVAAMPEAALKKPIIYPVGKVAASKKQKS ADAFLNFLQSQQCRKYFENIGFKLTK >gi|307679014|gb|GL456783.1| GENE 159 169474 - 170145 606 223 aa, chain + ## HITS:1 COG:alr2433_1 KEGG:ns NR:ns ## COG: alr2433_1 COG4149 # Protein_GI_number: 17229925 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, permease component # Organism: Nostoc sp. PCC 7120 # 1 216 3 216 223 164 45.0 8e-41 MDVRPILLSFQTAIIAILFTFVLGTGVAYIVFRLKNRKLKILLNSLFTLPLVLPPTVFGF FLLTIFGVQQPVGQFLLDFFAIQVVFSWPATVIAAVAVSFPLMYRSALTAFEQMDSELLA VAQTLGFSESRYFRKIALPLSMNGLLAGGVLAFARGLGEFGATTMLAGNIAGKTRTLPLA IYSAVASGDWRLANQYVVIMLLLCLIILFFTEFFSQRAWRRSE >gi|307679014|gb|GL456783.1| GENE 160 170142 - 171146 819 334 aa, chain + ## HITS:1 COG:sll0739_2 KEGG:ns NR:ns ## COG: sll0739_2 COG1118 # Protein_GI_number: 16331977 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type sulfate/molybdate transport systems, ATPase component # Organism: Synechocystis # 5 269 40 311 395 233 45.0 4e-61 MRLIVDIQKELKSHTLQIQFETKTQTTGILGASGCGKSMLLKCIAGVETADKGQIVLNDQ VLFDTEKKINLSPQQRKIGLLFQQYALFPHLSVVENLTCVTKDLQLVTQLLASFHLTKVQ QQYPSQLSGGQRQRVAFARMLAAQPAYLLLDEPFSALDAPLKEELQIELQQRLSNLNQHA LIVSHSLDELYKLCQSLVIITKNQTLFGATNQLFNQPQTIEAAKLTGCKNIWPVKRIDAH RVQVIGWQQTLTVTQEVPISCHSIGIRAHDFTTEPQATNQIEVHHLQTLSAPFEQSAWFQ HQQTKIWWKGSNRLNPKVITQLSIPPTAIMPLCL >gi|307679014|gb|GL456783.1| GENE 161 171268 - 173370 2636 700 aa, chain + ## HITS:1 COG:BS_yvgW KEGG:ns NR:ns ## COG: BS_yvgW COG2217 # Protein_GI_number: 16080402 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Bacillus subtilis # 1 694 4 700 702 691 52.0 0 MQKSYKLEGLDCASCADKIEKSVQKIHGVEKARVDFMAEKMTLEVESGHDLEVENEARAV IGKLEPDVKVISLKDVKEEEGRNPNKNRLIRIIIAFVLFLALIIIKPSNNWVALASYLVV YVLIGGDIVKRAVTNIFRGEVFDENFLMSVATIGAFFIGEYPEAVAVMLFYQVGEWFQSA AVDQSRKSIAKLMDIRPDSANLLVNGQIKTVAPDTIEIGQQILVKPGEKVPLDGQIIDGS SMVDTSALTGESVPRTVKVGDEILGGFINKNGALTINVTKKFGDSTVSKILDLVENASSK KAPAENFISKFARYYTPVVVVLAVLLAVIPPFIFPDTSINEWVYRALTFLVISCPCALVI SVPLSFFGGIGGASKLGVLIKGSNYLEILANTETIVFDKTGTLTKGNFVVQNITSVVLPE EELLRLTATAEQLSTHPIAISIKESYGKETVPATAIEEVAGHGIKATIEGKTVLVGNAKL MKQFGIEAPEVKEAGTLIFVAIDNQFAGYLVIADQLKPDAISAIKELKAEGVKQTVMLTG DNQQVAEAIAKEVGVDKVYAELLPDGKVDRLEELLKASSPKNKVAFVGDGMNDAPVLARA DVGIAMGGLGSDAAIEAADVVIMNDEPSRIASAIKLSRKTLRIVKQNIIFAIAVKIIVLV LGALGLASMQAAVFADVGVTIIAVLNAMRCLRVEKMKDNN >gi|307679014|gb|GL456783.1| GENE 162 173491 - 173676 106 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229545914|ref|ZP_04434639.1| ## NR: gi|229545914|ref|ZP_04434639.1| hypothetical protein HMPREF0349_1131 [Enterococcus faecalis TX1322] hypothetical protein HMPREF9509_01699 [Enterococcus faecalis TX0411] hypothetical protein HMPREF0349_1131 [Enterococcus faecalis TX1322] hypothetical protein HMPREF9509_01699 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9496_01076 [Enterococcus faecalis TX4000] # 13 61 1 49 49 81 97.0 3e-14 MIALYRVFSFDAMLRFPPVNQSIIAYCTMKKKRSAIFVQILSYYMPQSEKFKDFFTRTLA I >gi|307679014|gb|GL456783.1| GENE 163 173639 - 174082 549 147 aa, chain + ## HITS:1 COG:no KEGG:EF1402 NR:ns ## KEGG: EF1402 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 147 1 147 147 190 100.0 1e-47 MASNEKTRYKAIIADHTYTIIGQESKQHMDLVTKIVNEQLAEIKHLSPQTDTEQASVLLA INAISDQLKKQEYALKLEKQVADLKQKTIRLAELENRVRRMEIIEEEARDVLKKNGQEDV EIHNHVEAQQILNENRKQQIQNKGVSE >gi|307679014|gb|GL456783.1| GENE 164 174102 - 174650 527 182 aa, chain + ## HITS:1 COG:BH3108 KEGG:ns NR:ns ## COG: BH3108 COG1286 # Protein_GI_number: 15615670 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, required for colicin V production # Organism: Bacillus halodurans # 1 177 1 175 179 105 33.0 5e-23 MLTILILLLLAFGFYTGAKRGLILQVLYSVGYLISYFVARTYYKEVASHLELYIPYPSVT PTSKLVFFNQEISLDLDKAFYSAVAFLLLLFAGWLVVRFLAIFLHGLTFIPVLKQVNGLL GGVLSVLVLYVGLFLVLATASMIPSDIVQNQFRSSGLARGIVKNTPILTKQAYELWVEPI TK >gi|307679014|gb|GL456783.1| GENE 165 174761 - 177127 3079 788 aa, chain + ## HITS:1 COG:lin1195 KEGG:ns NR:ns ## COG: lin1195 COG1193 # Protein_GI_number: 16800264 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Listeria innocua # 1 788 1 785 785 727 53.0 0 MNQRILSTLGFDKVKQQLLQFIVTAQGTNEVSELLPIADENKIQSWLNETQDGLKVQRLR GGIPIPKLENIQPHMKRIEIGADLNGVELAQVGRVLSTTSELTRFFDELSENEVDFERLY MWREQLEVLPELNRQLKQAIDDDGYVTDEASPALKAIRQNIRRSEQTIREELDSIIRGKN ARYLSDALVTMRNERYVIPVKQEYKNIFGGVVHDQSASGQTLFIEPKQILEMNNRLRQQQ IAERNEITRILAELSAELVPYRREITHNAYVIGKLDFINAKARLGKELKAVVPEISQANH VVFKQARHPLLNPEKAVANDIVIGEEYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPI PVEEESKMGIFTEVFADIGDEQSIEQSLSTFSSHMTNIVSVLKKVDHQSLVLFDELGAGT DPQEGAALAIAILDSLGAKGAYVMATTHYPELKVYGYNRAGTINASMEFDVDTLSPTYRL LIGVPGRSNAFEISKRLGLDNSIIEAAKQIMDGESQDLNEMIEDLENRRKMAETEYLEAR HYVDESAALHKELKEAYQVFFEEREKELQKARKEANKIIAEAEENAETIISDIRKMQLES GQQGGVKEHQLIDAKTQLSQLHHEETKLAKNKVLKKAKEQKKLKAGDEVIVNTYGQRGTL LKGNGKGQWQVQLGILKMNVSEEDMTPVAPQKEAKPRVTTVRSAESSHVGTQLDLRGKRY EEALAEVDQYIDAAILAGYPQVTIVHGKGTGALRTGITEFLKNHRSVKSYEFAPQNQGGN GATVVKFQ >gi|307679014|gb|GL456783.1| GENE 166 177225 - 177539 529 104 aa, chain + ## HITS:1 COG:SPy1835 KEGG:ns NR:ns ## COG: SPy1835 COG0526 # Protein_GI_number: 15675662 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Streptococcus pyogenes M1 GAS # 1 102 1 102 104 149 74.0 1e-36 MTQAITDKDFATETDEGLVLIDFWATWCGPCRMQAPILEQLSEEYDEDEVKIVKMDVDEN PATPASFGIMSIPTLLLKKDGEVVEKAVGVHTKDQLQAMIAKHL >gi|307679014|gb|GL456783.1| GENE 167 177704 - 179500 1877 598 aa, chain + ## HITS:1 COG:lin1197 KEGG:ns NR:ns ## COG: lin1197 COG0322 # Protein_GI_number: 16800266 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Listeria innocua # 2 588 3 590 603 855 71.0 0 MNERIKNKLALLPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFRGSHDTKTERLVSEI DDFEYIVTESNIEALLLEINLIHKNNPKYNIMLKDDKTYPFIKITNEKYPRLMITRKVLK DKALYFGPYPDVNAANETKKLLDRLFPLRKCNPSQKTPCLYYHLGQCLCPYAFDVDPQVY KDMVEEIKGFLSGGHTEIQDRLQEKMAYAAAHMEFEKAAEFRDQIKAIETVMTRQKMTNV DLIDRDVFGYAVDKGWMCVQVFFVRQGKLIERDVSIFPFYDDASEAFLTFIGQFYQENEH FVPKEVLIPDDIDKESVEALLATKVLQPQRGEKKKLVKLASKNAAVALNEKFDLIVRKQE RTIGAVEKLGNAMNIPAPIRIEAFDNSNIMGTNPVSAMVVFIDGRPAKNEYRKYKIKTVQ GPDDYASMREVIYRRYSRVLKEGLPFPDLILIDGGKGQVDVAKDVLANQLGVDIPVAGLA KNDKHKTSELLFGPNLEVVPLERNSQEFFLLQRIQDEVHRFAITFHRQLRSKNSFASKLD NIEGLGPKRKKNLLKEFKSLKNITAASVEELRKAGLPETVAKNVYRHLHQETTSEIEK >gi|307679014|gb|GL456783.1| GENE 168 179652 - 179909 257 85 aa, chain + ## HITS:1 COG:no KEGG:EF1407 NR:ns ## KEGG: EF1407 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 85 1 85 85 156 94.0 3e-37 MKILTPVYQIKFKKVPNQLLIDERLMNELGTWLNRTGRIWACQSSKSAKEFKNKFYESTG LTANEVHISAETDGLFRLAENKESD >gi|307679014|gb|GL456783.1| GENE 169 180014 - 180913 276 299 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 2 290 5 298 311 110 26 7e-23 MLEVKELVKTFGDFKAVDHVSFTIPDGKILGLIGQNGAGKTTTFRLILNFLTQDSGSVLW NGQPLNEKEYNIIGYLPEERGLYPKITIEDQLIYFASLRGKTKKEIEPKIDFWMEKFQVK GKKTDKVKSLSKGNQQKVQLIATLIHEPKLIILDEPFSGLDPVNAELLKDGIIELKNQGS CVIFSSHNMDNVEKICDHLVMLKNGRMVLDGQVHEIRQQFGRTKLFLESPLSVEEVAATA GVKEAHLRQDGVLEATLENAEVGKVLFDKATANGYIPMFNQQPPTLEEIFKMKVGGQDE >gi|307679014|gb|GL456783.1| GENE 170 180906 - 182168 1133 420 aa, chain + ## HITS:1 COG:SP1716 KEGG:ns NR:ns ## COG: SP1716 COG1668 # Protein_GI_number: 15901550 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: ABC-type Na+ efflux pump, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 411 1 397 399 202 32.0 1e-51 MSKFWIIATDVYKKNVKSLSFLIMILAPFLLVGIVYLAGSLASGFSGDTTIGLVSENQAL VKELTKNKTEDFSFKAVSSEKKAQEQLKDEKIDAYLLLDTTDNQISGQLYSERSLGNATE MLIPQMLNQLQTMANANRLNLTAEQVAMLNQQATFKKAKISFDENGKIKTGEDNTGIQMA LAMGITILLFVFISSYSSIIAQEIASEKGTRIMEVILSSTKAQTHFYGKLTGVILVALTQ IFIYGVAFVLGYSQLKNLDFMKSLLSGISPQSIFSSTFIFTLGFFIIGILVFAVLAALCG SLVSKPEDTAKAVQPIMYIGLIGYMIGITFGTNDPQNIVVKVTSFIPLISSYIMPVRLAT ETASTMEAIVSLVILAVFGIILTIFSARLYKSNVLVYSEGGMIQSLKQSISILKNEQKHK >gi|307679014|gb|GL456783.1| GENE 171 182204 - 183202 1146 332 aa, chain - ## HITS:1 COG:lin0539 KEGG:ns NR:ns ## COG: lin0539 COG1609 # Protein_GI_number: 16799614 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 321 1 321 322 263 41.0 2e-70 MTSIIDVAKVAGVSKSTVSRLISGKGYVSADSQEKILKAMKELNYTPNYVARNLRAGATK TIGFLAPSYLGSLGIFLNRFISIAKKYNYSVTLFFTDGDQQKEIDALNQLKYKQLDGLFL LTRTNEWSVIEPYSAYGPLATWHRIDSPNIYSSYIDHYSGYYRSLEYLQQQGYQKIGHVL GNPENLNTHARKRAMKDFYENTQAPWQAEWLINDQYTNHSGRKIAHYWQQLTDKPEALAF YNDHVAAEFISELENLNYAVPRDVAVIGFDNSYVSELMHITTVDYAIQYQAENSFIYLYN QLNQTKIPEKKLTVRLVERRTVPKKDPADQSL >gi|307679014|gb|GL456783.1| GENE 172 183344 - 184738 1724 464 aa, chain + ## HITS:1 COG:lin0540 KEGG:ns NR:ns ## COG: lin0540 COG1486 # Protein_GI_number: 16799615 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases # Organism: Listeria innocua # 1 440 1 439 440 629 67.0 1e-180 MTRGALKIATIGGGSSYTPELIEGYIKRKDELPIKEIWLVDIEAGKEKLEIVGAMAKRMI KAAGLDWEVHLTLDREAALKGADFVSTQFRVGLLDARIKDERIPLSHGVLGQETNGAGGM FKAFRTIPVILAIIDDMKRLCPDAWLVNFTNPAGMVTEAAIKHGGWKKTVGLCNVPIGHR KQAAEMLGIPEEDLFFKFAGINHFHWHRVWDKEGQERTQELIDLIYGPKQEQESHLKNIF DAPFHYEQLKDLGMLPCGYHRYYYIEDEMLKHSIEEYERGETRAQVVKETEGRLFELYKD PKLDYKPKELEERGGTHYSDAACEMIASIYNDKRTDMVVSTENNGTITDLPYDCVVEVSG PVTAHGHEPYNWGAFPPAARGIIQNMKAMEETVIRAAINGDYGAALHAFTINPLVPGGVM AKTLLDELLIAHKAHLPNFADAINKIEETQPETVTYVAELMKSN >gi|307679014|gb|GL456783.1| GENE 173 184764 - 185198 606 144 aa, chain - ## HITS:1 COG:no KEGG:EF1412 NR:ns ## KEGG: EF1412 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 144 1 144 144 240 100.0 1e-62 MKITLTRKTSAWGALRYFTFYKNGVHQGKLFTNVPIEIEADPGDVLTFYEGWFQFYRRIE VTEDTKEITIINSKKLQHVFYTCVVLFLILTLLFLSAQKLSTFIIAEILIYSGIQWLFRQ QTYHFTVKKKTESFASYSKKSIAH >gi|307679014|gb|GL456783.1| GENE 174 185534 - 186982 1295 482 aa, chain + ## HITS:1 COG:BH1900 KEGG:ns NR:ns ## COG: BH1900 COG0488 # Protein_GI_number: 15614463 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Bacillus halodurans # 4 481 2 478 538 280 35.0 4e-75 MKKLSIHLKEVSIHFSGKTILEIDELFVYENEKIGIIGKNGAGKSTLLNLIMGKIQSDKG KVQRLNDFHYLAQVAEEITNEPEKTDKNCLLNQKNQKLSGGEKVQKRLATLFSEYPTGVI LDEPTTHLDKEHRQLLVADLTYYYGTVLFVSHDRFFLNQLAEKIWEVSDGHVKEYLGNYD AYCRQKELEQQTQYNVYHQYQKEKKKLQESYTKKQAQAQKSSHVSKKQKQKQIKPSRLAG SKQKDTVQKALQKQAKAINARIDRLPDVAQAKQKRKIIFPTNNQFSLYNPYPIRIENLTF AYENRTILNQVNVQIPLNEKIALCGKNGAGKSTFLQQIEARHPAIYFSPKVRLGTYHQLD YRLKNDEPLLTYLLKRTNYSEKIVRSLLYRLGFQQENLQTKISSLSGGEAIKITLAQLFI EPNNIILLDEPTNFLDLDTIQALEEFISAYQGTVIFTSHDETFVEKVATRTIYLENGKII DK >gi|307679014|gb|GL456783.1| GENE 175 187023 - 188309 1258 428 aa, chain - ## HITS:1 COG:L56208 KEGG:ns NR:ns ## COG: L56208 COG2081 # Protein_GI_number: 15672240 # Func_class: R General function prediction only # Function: Predicted flavoproteins # Organism: Lactococcus lactis # 2 420 6 422 423 520 62.0 1e-147 MKKFDVIIVGAGTSGMMATIAAAEAGAQVLLIEKNRRVGKKLLMTGGGRCNVTNNRPAEE IISFIPGNGKFLYSAFSQFDNYDIMNFFESNGIHLKEEDHGRMFPVTDKSKSIVDALFNR INELGVTVFTKTQVTKLLRKDDQIIGVETELEKIYAPCVVLTTGGRTYPSTGATGDGYKL AKKMGHTISPLYPTESPIISEEPFILDKTLQGLSLQDVNLTVLNQKGKPLVNHQMDMLFT HFGISGPAALRCSSFINQELTRNGNQPVTVALDVFPTKSFEEVLKNVDYMIEEQPNKVAK NAFHSLIPERLLTFYLEKLAIEEVPAKQLTEKQRLSFVELLKDFQFTVTKTLPLEKSFVT GGGISLKEVTPKTMESKLVNGLFFAGELLDINGYTGGYNVTAAFVTGHVAGSHAAEIAEY TYLPIEEV >gi|307679014|gb|GL456783.1| GENE 176 188431 - 189489 810 352 aa, chain - ## HITS:1 COG:lin1828 KEGG:ns NR:ns ## COG: lin1828 COG4748 # Protein_GI_number: 16800895 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 352 3 355 355 371 58.0 1e-102 MEMEKFKDDLKSLGKRVTKLKENIATEEATKTSLIMPFFQILGYDIFNPLEFVPEFTADV GIKKGEKVDYAIVIDSIPTMLIEAKSVNEQLTKHDSQLFRYFGTTTSKFGILTNGKEYKF FTDLEEPNKMDVSPFLTIDITNLKDTQIPEIAKFHKDTFDIDKITSSASELKYLNKFKAF LSDQLLDPSEDFVKYFVGEIYGGVKTKQTLDKFTPIIKKGINQFINEKVNEKLSAALNTS VSDKEDDLSEQPEDEIENNIVTTPEELEVYTISKLILKDTVVLDRIFYRDNKSYFNVLLD NNIRKWILRFYMNNNGMKIELNNGLKELISIESPLDVSNHSEKIIKIVNEFL >gi|307679014|gb|GL456783.1| GENE 177 189729 - 191075 1694 448 aa, chain + ## HITS:1 COG:lin0569 KEGG:ns NR:ns ## COG: lin0569 COG0334 # Protein_GI_number: 16799644 # Func_class: E Amino acid transport and metabolism # Function: Glutamate dehydrogenase/leucine dehydrogenase # Organism: Listeria innocua # 3 448 14 458 458 551 64.0 1e-157 MDAKQYVKNIQEKIHQLDQGQTEYLQAVDEFLPTVEGFLEKNPRYIEANVLGVLIEPERI FQFRVPWQDDQGNWYVNRGYRVQYNSAIGPYKGGLRFHPSVNLSVMKFLAFEQIFKNSLT GLPIGGGKGGSDFDPKGKSNAEVMRFCQSFMTELQKHIGPSTDIPAGDIGVGAREIGYLF GMYKRLRNYDAGVLTGKPLGYWGSQARTEATGYGTVYFVKHLLADKNDTFEGKKVAVSGS GNVAIYAMEKATELGATVITCSDSSGFVYDPEGIDVALVKELKEKNRERISKYVETRKGA TYYDKESVWDFETAYDIALPCATQNEINEKQAAILVKNGVKVVAEGANMPCTLEAVAVFA KSAVIYCPGKAANAGGVAVSALEMSQNAERLAWSFEKVDGMLDQIMQNIYETCRDTANEY QARDNFVLGANIAGFEKVAAAMLSQGLV >gi|307679014|gb|GL456783.1| GENE 178 191257 - 192606 1843 449 aa, chain + ## HITS:1 COG:SP2070 KEGG:ns NR:ns ## COG: SP2070 COG0166 # Protein_GI_number: 15901889 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate isomerase # Organism: Streptococcus pneumoniae TIGR4 # 1 449 1 449 449 684 74.0 0 MSHIQLDYSKLAPFVADHELEYMQTQVTAVDKALREGTGAGNDFTGWIDLPENYDKEEFA RIKKAAAKIQSDSEVLVVIGIGGSYLGARAAIEFLTHSFNNLLSKEERKAPQIFFAGNSI SSTYLADLINVIGDRDFSVNVISKSGTTTEPAIAFRVFKELLINKYGKEEANKRIYATTD RAKGAVKVEADAEGWETFVIPDDVGGRFTVLTPVGLLPIAVSGADIDRLMEGANDARKEY GATSDLKENQAYQYAALRNILYRKGKTTEMLINYEPGMHYFSEWWKQLYGESEGKDGKGI FPAAADFSTDLHSMGQYVQEGMRNLFETVVKIENPRHSISIPEQNEDLDGLGYLQGKEID FVNTKAFEGTLLAHTDGGVPNMIVKVPTMDAYSLGYVMYFFEIAVGISGYLNGVNPFDQP GVEAYKRNMFALLGKPGFEELAKDLNARL >gi|307679014|gb|GL456783.1| GENE 179 192672 - 192851 233 59 aa, chain - ## HITS:1 COG:no KEGG:EF1490 NR:ns ## KEGG: EF1490 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 59 1 59 59 85 100.0 5e-16 MRNTWLAEQLQSISEEPNSFIIEETIKYIEQLEDDNESLQVALEGTIWSPKKWNEPLEK >gi|307679014|gb|GL456783.1| GENE 180 192910 - 193353 562 147 aa, chain - ## HITS:1 COG:SPy1984 KEGG:ns NR:ns ## COG: SPy1984 COG1780 # Protein_GI_number: 15675774 # Func_class: F Nucleotide transport and metabolism # Function: Protein involved in ribonucleotide reduction # Organism: Streptococcus pyogenes M1 GAS # 1 143 4 142 160 138 47.0 4e-33 MNIRYISISGNTRSFVQRLTTYAEEQHQHNEKNPTITFKEISENSPLEVETEPFFTFVPT YLDGGDGINNGNTEILTEVMREYLAFENNYRYCSGVVGSGNKNFNHQYCLTAKQYAEQFN FPFLADYELRGTQADIERIYAILKKNQ >gi|307679014|gb|GL456783.1| GENE 181 193726 - 194049 569 107 aa, chain + ## HITS:1 COG:no KEGG:EF1492 NR:ns ## KEGG: EF1492 # Name: not_defined # Def: V-type ATPase, subunit F # Organism: E.faecalis # Pathway: not_defined # 1 107 1 107 107 112 100.0 4e-24 MVQEVLEQIKAAEDAVEEHRQQAKMNCRLYEEQKQERLAELRQESEEAVEKVLTDSLATQ EKMLQLEKEQLLDETKRTEQALHERYEANKEQVIDSIIERVKDVYGS >gi|307679014|gb|GL456783.1| GENE 182 194039 - 196018 2175 659 aa, chain + ## HITS:1 COG:SP1322 KEGG:ns NR:ns ## COG: SP1322 COG1269 # Protein_GI_number: 15901176 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit I # Organism: Streptococcus pneumoniae TIGR4 # 1 659 1 662 663 357 35.0 4e-98 MAVSKMEKMTIIAAAEKEAAILQAIQGLQIVEVKRIFHSPEEEQALKSQYSFLQAEQSTE QLRKYETMLQQLQELLLFLTRSSGKGLKIKRKVYTLEELEQTFDEETLQSYLTELKNIQE SLKQIQTDRQGLEAEEELLGRWQYLDVLPHKQQLKSSYVVHGSINLANKASFLSALSQWP TVYFEEIYQSMHHSYFTLVYLKEHQQSVTELLNQYSFEPLQYRYDVPPKEAYQQVKERYE ILQKEEKALKQQLASYHDFYETFCLAEEVLLAVIQREQARQHLLNASSFFILQTWIPVEE KAEILTAIEEKVPKDEIALTFENPTKAEIETDIPVKLANNKLVQPFEMLTEMYSLPKYEE VDPTPAMMPFYLVFFGMMVADIGYGLLMLLLSIIALKAFVLPRGMKRFADFFLILSFPTI IWGFIYGSFFGAALPPTMFGIKSPFPILSTTEDVNTILILSVIFGFIQLVVGLMINGIQL SKQKRYLDSINESYAWLGILFGLALLVVGKLVVKNEGLFTAGAILASLSAIAIIVIPMIQ SKAKLKGLAKGLYGLYGVTGYVGDLVSYTRLMALGIAGGSIASAFNMLVEFMPPVARFSV GILLLIVLHALNIFLSLLGAYVHGARLQYVEFFGKFYTGGGRAFNPLKTKEKYVNVEKK >gi|307679014|gb|GL456783.1| GENE 183 196046 - 196519 793 157 aa, chain + ## HITS:1 COG:SP1321 KEGG:ns NR:ns ## COG: SP1321 COG0636 # Protein_GI_number: 15901175 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K # Organism: Streptococcus pneumoniae TIGR4 # 10 156 12 158 158 142 60.0 3e-34 MMDYLINNNGGIVFAVLGMAMATIFAGIGSAKGVGFTGEAAAALTTEQPEKFGQALILQL LPGTQGLYGFVIAFLIYINLGNDMSMVQGLNYFVAALPIAFAGLFSGIAQGRVAAAGIQI LAKKPEHATKGIIYAAMVETYAILGFVISFLLVLNVK >gi|307679014|gb|GL456783.1| GENE 184 196536 - 197117 915 193 aa, chain + ## HITS:1 COG:no KEGG:EF1495 NR:ns ## KEGG: EF1495 # Name: not_defined # Def: V-type ATPase, subunit E # Organism: E.faecalis # Pathway: Oxidative phosphorylation [PATH:efa00190]; Methane metabolism [PATH:efa00680]; Metabolic pathways [PATH:efa01100] # 1 193 1 193 193 253 99.0 2e-66 MDAIEKIISEIKQQGKQEVEAYVTSEQTRIDQEFQAAQQEILLKQEHEIEKRQQQLLKEF KQRQQRQTLEIRQDALNKKQAYLNQLFDEVVLKMSEWSAEEFQEFMKAQLGSLELTGKAT ILLGEYSQTKVTQEWLTALSDATVQWELSEEVVPKESGFIVAKDGLDYNFLFSALVEEIQ KTEGFKVAEKLFS >gi|307679014|gb|GL456783.1| GENE 185 197134 - 198135 1043 333 aa, chain + ## HITS:1 COG:SPy0151 KEGG:ns NR:ns ## COG: SPy0151 COG1527 # Protein_GI_number: 15674361 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit C # Organism: Streptococcus pyogenes M1 GAS # 4 330 2 331 332 122 29.0 7e-28 MRKPTYHQINPLIRLKETELLSEQQFQQLLEAETVEDVKNMLKSTVYQPYLTETFEEKFD YHSSEALGNLYRWLYEMAPEPAVVTLYTMRFTFHNLKILTKAERTGKDFDYLYLEDGRYS LNTVKSAIHTKNSSELEPALLEVIRDVFAYLEEGGLPQAIDILYDRAFLQQQRKLADELG YEELTKEVIAFIDLTNLSTMARGIVQHQNSNFLSTVLSSAGSLSKKELLTYAEKSLVEFT AFVRTTNYGQLLEKIINKETNELNLLAFEKLKDDYLTSMYENGRTVAFGPLPLLAFLNAK EVEWKNLRLILVGKHSGFSNEKIRERMRKVNGV >gi|307679014|gb|GL456783.1| GENE 186 198125 - 198436 396 103 aa, chain + ## HITS:1 COG:FN1737 KEGG:ns NR:ns ## COG: FN1737 COG1436 # Protein_GI_number: 19705058 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit F # Organism: Fusobacterium nucleatum # 3 103 5 105 105 99 48.0 1e-21 MGYKIGVIGDKNSILPFKLFGFEVHHAISEMQVREAIETMAKNKFGVIFITEEASTLAEE TIERYKEQVTPAIILIPSHNGTIGIGLSEIEKNVEKAIGQNIL >gi|307679014|gb|GL456783.1| GENE 187 198454 - 200235 2360 593 aa, chain + ## HITS:1 COG:SPy0154 KEGG:ns NR:ns ## COG: SPy0154 COG1155 # Protein_GI_number: 15674362 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit A # Organism: Streptococcus pyogenes M1 GAS # 1 590 1 591 591 855 71.0 0 MQIGKIVKVSGPLILAENMSDASIQDICHVGDLGVIGEIIEMRGDVASIQVYEETTGIGP GEPVISTGEPLSVELAPGLIAEMFDGIQRPLDTFQEVTHSNFLGRGVKIDALDREKKWTF EPTVAVGEEVSAGDIVGVVQETPIIQHKIMVPFGVSGTIAEIKAGDFAIDETVYSVKTAK GTESFSMMQKWPVRRGRPILEKLSPKVPMVTGQRVIDTFFPITKGGAAAVPGPFGAGKTV VQHQIAKWADVDLVVYVGCGERGNEMTDVLNEFPELIDPTTGESLMNRTILIANTSNMPV AAREASIYTGITIAEYFRDMGYSVAIMADSTSRWAEALREMSGRLEEMPGDEGYPAYLGS RLAEYYERAGQVIALGKDHREGSITAISAVSPSGGDISEPVTQNTLRVVKVFWGLDSQLA QKRHFPSINWLQSYSLYSTEVGQYLDLELQGNWAAMVAEGMRILQEESQLEEIVRLVGID SLSDKDRLTLETAKSLREDYLQQNAFDDVDTFTSRTKQAKMLQLILTFGEEGQKALSLGT YFSELMAGTVEIRDRIARSKYLPEEELEKLDRLQAEIKTTIKEIIAEGGMTND >gi|307679014|gb|GL456783.1| GENE 188 200228 - 201604 1873 458 aa, chain + ## HITS:1 COG:SPy0155 KEGG:ns NR:ns ## COG: SPy0155 COG1156 # Protein_GI_number: 15674363 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit B # Organism: Streptococcus pyogenes M1 GAS # 1 454 3 456 471 763 81.0 0 MIKEYRTINEVVGPLMIVEKVAGVKYEELIEVRMQNGEIRQGQVLEINGDKAMVQIFEGT SNINIRDSKVRFLGHPLELGVSPDMMGRVFDGLGRLKDNGPELLPEKKLDINGEVINPVA RDYPDEFIQTGISAIDHLNTLVRGQKLPVFSASGLPHKELAAQIARQANVLNSEEEFAVV FAAIGITFEEAEYFMEDFRQTGAIDRSVLFMNLANDPAIERIATPRMALTAAEYLAYEKG MHVLVIMTDMTNYCEALREISAARREVPGRRGYPGYLYTNLATLYERAGRIRGSKGSVTQ IPILTMPEEDKTHPIPDLTGYITEGQIILSRELYKSGIQPPIDVLPSLSRLKDKGTGEGK TRGDHAATMNQLFSAYAQGKQAKELAVILGESALSDVDKIYAAFAQRFEEEYVNQGFDTN RSIEETLDLGWELLSMLPRTELKRIKEDMLDQYLTEGK >gi|307679014|gb|GL456783.1| GENE 189 201609 - 202244 711 211 aa, chain + ## HITS:1 COG:FN1733 KEGG:ns NR:ns ## COG: FN1733 COG1394 # Protein_GI_number: 19705054 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit D # Organism: Fusobacterium nucleatum # 1 207 1 206 211 196 56.0 3e-50 MARLNVNPTRMELSRLKKQLTTATRGHKLLKDKQDELMRRFIALVKENNELRIQVEQEVT DALSNFVLANATLNEAFIEELVAIPAEKVELEIIEQNILSVPVPKMIFDYDESVQEAPLD YGYVNSNSELDQAFAKISSILPKLLALANVEKTCQLLSKEIEKTRRRVNALEYMTIPQLE ETIYYIQMKLEENERGEITRLIKIKSMNKEN >gi|307679014|gb|GL456783.1| GENE 190 202319 - 202708 510 129 aa, chain + ## HITS:1 COG:no KEGG:EF1501 NR:ns ## KEGG: EF1501 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 106 1 106 106 196 100.0 2e-49 MKNEERRKAIALNCQKYESDYARLVEPINELLLNLGAAISEEAAKQIILNVKRYHHGVKY LPECHLDESNQFIEDGLEALKKGDLGNGALQLFGAGLNFASFAAKAQGTKKIDAHQMLAE RFTKLLSVK >gi|307679014|gb|GL456783.1| GENE 191 202847 - 203356 447 169 aa, chain + ## HITS:1 COG:BH0263 KEGG:ns NR:ns ## COG: BH0263 COG1595 # Protein_GI_number: 15612826 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Bacillus halodurans # 1 162 1 181 187 83 29.0 2e-16 MDKISTKKLVQKAKKGDGQAFVHLCQKYETVLYNAAYKMLLNEVDVADCLQETELCAWEK ITTLKNEHAFNSWIFKIMLNQVQNIFREKQKTTHWMDTYSPVPAFDDLYDLDKGLHKLPD NYRVPLVMYYYVGFSIKEIAQQLDVSTNTIKIRLSRGRKKLRIYLKETW >gi|307679014|gb|GL456783.1| GENE 192 203357 - 204454 910 365 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229550078|ref|ZP_04438803.1| ## NR: gi|229550078|ref|ZP_04438803.1| conserved hypothetical protein [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis X98] hypothetical protein CUI_1757 [Enterococcus faecalis PC1.1] hypothetical protein HMPREF9498_03165 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9504_00542 [Enterococcus faecalis TX0102] conserved hypothetical protein [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis X98] hypothetical protein CUI_1757 [Enterococcus faecalis PC1.1] hypothetical protein HMPREF9498_03165 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9504_00542 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9500_00264 [Enterococcus faecalis TX0017] hypothetical protein HMPREF9497_01435 [Enterococcus faecalis TX4244] hypothetical protein HMPREF9502_02415 [Enterococcus faecalis TX0031] hypothetical protein HMPREF9503_01591 [Enterococcus faecalis TX0043] hypothetical protein HMPREF9508_02143 [Enterococcus faecalis TX0312] hypothetical protein HMPREF9518_02355 [Enterococcus faecalis TX1342] hypothetical protein EF62_1881 [Enterococcus faecalis 62] conserved domain protein [Enterococcus faecalis TX1467] # 1 365 1 365 365 627 100.0 1e-178 MDRKRSDILKYEKKMPLETVERLNTQRTKILMGEIKQYRQPKKKISRKHLIIGLISIATT FTLIVKTPIGRAIEEVLGISQDTGVQTVESSGVPTKLELRSVQNEREIVLTKFVSTKNKM AFDYQFKIKDQKLKELLQKKIARNNYSQDIQLGLFREGSKEDLFGGVSSTSLYRIEKDVF YGSVISTFNKQKLVSQDQLTLHIYRLAWEDQEQHDNELKEAIKASSRSFSVENALEYQGD WTFKIPYQPIMKETIPSIKNVKKIKNIKAQSDALQTTLIMDIPNPEKNKKSRDILISVYK NGLEIPIARQIGSGFNKGEDATINISFDLSSLDHKSLYKVIVRNSYEDDAAGKELGSLEL KNTQK >gi|307679014|gb|GL456783.1| GENE 193 204565 - 204987 445 140 aa, chain - ## HITS:1 COG:no KEGG:EF1502 NR:ns ## KEGG: EF1502 # Name: not_defined # Def: beta-lactamase, putative # Organism: E.faecalis # Pathway: not_defined # 1 137 176 312 313 267 100.0 1e-70 MLYDTLGGDAKAKREMYQRYLHKTPSIEEPQFSSEDALVILQKLYTEKATKPDYQAIYDS MKQSVFHERMETPTTQGKVAHKIGSYDEFIHDMGILETPHPFALAIFTKGPDNAKSAAFI ASVTDKLWQLQVSEYPNDNH >gi|307679014|gb|GL456783.1| GENE 194 205116 - 205511 274 131 aa, chain - ## HITS:1 COG:no KEGG:EF1502 NR:ns ## KEGG: EF1502 # Name: not_defined # Def: beta-lactamase, putative # Organism: E.faecalis # Pathway: not_defined # 1 127 1 127 313 241 100.0 6e-63 MKKQQLSLYGTIFFLCFFLIVGFFFSSRGEDYAKESEQKVTIDSAKHEKHTKDKEENNSA NTVFFDKINDLLVASVKEFEGTVGISYLDLETGEQRSVNGQHEFYTASTIKVPLTMLVAD TVASGQKNGQT >gi|307679014|gb|GL456783.1| GENE 195 205606 - 207486 1669 626 aa, chain - ## HITS:1 COG:BS_fbp KEGG:ns NR:ns ## COG: BS_fbp COG3855 # Protein_GI_number: 16081071 # Func_class: G Carbohydrate transport and metabolism # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 7 619 47 662 671 664 53.0 0 MATLNRDQQIEEIINLEAILNLPKGTEHFVSDLHGEFEAFDHILRNGSGRIREKVQFLFK QELNAHQMDELCFIIYYPEEKLTLLENESALSYEWWLLTIRRLVEIVRSSSMKYTRSKVR KALPETYGYILEELIYQYDETTTKNGYYQQIIEKIILLGEAKRFVTELAYLIQRLIIDHL HVIGDIYDRGPAPDKIMDRLMSYHSLDIQLGNHDMIWLAAYSGSLACLANVVRICARYGN LDLLEERYAIDLTALKKFSLETYKENPAFAPKKNPYRALTEAEKQIAMRVQQAIAIIQEK LEGQIIGRRPDFNLAHRLRLDKIQGETITFDECRYTLINSCFQTVSEEQPYQLTREEKQI IDDLLTQFQSSPRLTKHMRFLMEKASLYLVYNQNLLIHGCLPLNADGTFQAYTFKGHSYS GKALVDFFQKMLEEAYAQPASTDDYATDCLWYLWCGEGSSLFGKRAMKTFERYFLAEKET HHEEKNPYYSLRDTVEVCERILDEFEVTGENRHIINGHTPVKRTKGESPIKANGALLVID GGFSKSYQTITGIAGYTLLYNSFGLQLTAHKSFSSKETAILNNQDIHSIKQVIDRPLQRL LVKDTTIGKELLKQSQALQKQMKQNQ >gi|307679014|gb|GL456783.1| GENE 196 207702 - 208994 1411 430 aa, chain + ## HITS:1 COG:BS_lysA KEGG:ns NR:ns ## COG: BS_lysA COG0019 # Protein_GI_number: 16079395 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate decarboxylase # Organism: Bacillus subtilis # 2 429 3 430 439 531 58.0 1e-150 MLFGTAKMNRENHLEIGGCDTVKLAQKFGTPLFVYDVAHIRAQARGFKQTLNQLGIKNKV VYASKAFSCLAIYQVLKEEDIACDVVSGGELFTALKGGMEPAEIEFHGNNKTPEELRYAL DNKIGTIVIDNFYEIDLLEELLTTRNQTQKVLFRVSPGVDAETHDYILTGQEDSKFGFDV ASGQATEALVRLLSNPSFDVQGVHCHIGSQIFAVEGFLAAVEKMFTILEDWRQVHQFTAR VLNMGGGFGVQYTQQDEPLAPATFVEKIVYSLKGHCEQLGYPLPELWIEPGRSLIAEAGT TIYTVGAQKEVPGVRHFVSVDGGMGDNIRPALYQAVYDGFLANREGHDSVKKVTVVGKYC ESGDVLLRDILLPEVKAGDLLAISSTGAYGYSMASNYNRNPRPAVVFVEDGQAKLVARRE TYEDMTTLDC >gi|307679014|gb|GL456783.1| GENE 197 209141 - 210133 993 330 aa, chain + ## HITS:1 COG:SPy1892 KEGG:ns NR:ns ## COG: SPy1892 COG1073 # Protein_GI_number: 15675706 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Streptococcus pyogenes M1 GAS # 105 320 91 305 308 204 50.0 1e-52 MKWLLGLLIIFAMIGVVFSVYIANYFLKIALLKDNPWYHKKGHRLLNPDNFQERETRYTK IEEQQKQEGEAFWTESFAEDRWLKIKDETLYARCFIPYPDNHRWAICVHGYRSNGKRDMA YTALRFAEEGYNVLVPDLRAHGKSSGNKIGMGWLDRLDLLSWISEVLAIDMEAEIILVGG SMGAATVMMASGEKLPTNVRGLIVDCGYTSVYDEFKYVLHESFHLPAFPILTIANQLALN NYGFQLKTASSVRQLHKNTLPTFFIHGTGDRFVPMTMFEENLAATQGIKKGLIVAKAPHL SSSVYEPENYYSSIFEFLEENCPAVKTISD >gi|307679014|gb|GL456783.1| GENE 198 210130 - 210681 321 183 aa, chain - ## HITS:1 COG:no KEGG:EF1506 NR:ns ## KEGG: EF1506 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 173 1 173 177 276 99.0 3e-73 MEMYQVIRYFLNEMEKKIWHALLTLVLFCLYISIFDVPFTIKNTFIGRLLFPKAFMNAGS ANLIFYLISFFGFLWSIFIFAYLLNKTRLKLLNKTFPYLLEILEVCILPLVILFAYIYIY LRVHGEGFSYIRESLLQQELTYSMKWFLCLGSLAPLFFFLSTLNLAKRVRQKKTWNHENP CLF >gi|307679014|gb|GL456783.1| GENE 199 210967 - 211821 440 284 aa, chain + ## HITS:1 COG:no KEGG:EF1508 NR:ns ## KEGG: EF1508 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 125 284 1 160 160 311 98.0 3e-83 MAEITVKTISEKDDLKKLLLGQEYDHQQPVKNILKARTSNVHIEKYEVVEDVFLKLTGKA TMHKDIMNSFWTTYKIMLQLVYPDFFRPAEVIGENQESYLEKSSEQNLLAVNSKYPPYDS GTSAVISDRYLTYFDQVFPDYLPNPVPKKYTWNEFLLDNFTKFERVHQDPQLKRFAELTH SIGNITVVPLGFNSGRSLSFKDYWDYSLEQLSIFLASFHSWESYVHTYEMQPFLNEQYQP VALWKNHLKKDSFILPQNIEEINEYLVQVNQRIEKRGQRIVNRL >gi|307679014|gb|GL456783.1| GENE 200 212034 - 212573 451 179 aa, chain + ## HITS:1 COG:no KEGG:EF1509 NR:ns ## KEGG: EF1509 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 179 1 179 179 346 97.0 2e-94 MQFTLLNQENQACWEATYIEAFPEEERLPFGQLLTSSQAGKFHLFVIQEADENVGILLNS QIAPEATYVFFFAIDQHHRNKRLGSTVLALLKTRYPKGVLLESEEIGKNAANEAQREKRY QFYERNGVQDTGYLIMDRGLTFHIMFAGASGFGGTQLQFLLDFHPVAKIWKKPSIDGIR >gi|307679014|gb|GL456783.1| GENE 201 212671 - 213015 604 114 aa, chain - ## HITS:1 COG:L106356 KEGG:ns NR:ns ## COG: L106356 COG2151 # Protein_GI_number: 15672865 # Func_class: R General function prediction only # Function: Predicted metal-sulfur cluster biosynthetic enzyme # Organism: Lactococcus lactis # 9 114 6 110 110 149 73.0 1e-36 MSEQPQQRSTEEVEAIKEDILTALETVIDPELGIDIVNLGLIYEVEFAEETGDTVIKMTL TTMGCPLADVLTEQIHGVLKDIPEVNNIEVKLVWYPAWTTDKMSRYARIALGIR >gi|307679014|gb|GL456783.1| GENE 202 213291 - 214355 1079 354 aa, chain + ## HITS:1 COG:FN1586 KEGG:ns NR:ns ## COG: FN1586 COG4948 # Protein_GI_number: 19704907 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Fusobacterium nucleatum # 1 352 13 365 375 278 43.0 1e-74 MKIKQVHVRASKIKLKETFTIALGTIESADSAIVEIETEEGLVGYGEGGPGIFITGETLA GTIETIELFGQAIIGLNPFNIEKIHEVMDKISAFALAAKAAIDIACYDLMGQKAQLPLYQ LLGGYDNQVITDITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTGIEADIARVKAIREAV GFDIKLRLDANQAWTPKDAVKAIQELADYQIELVEQPVKRRDLEGLKYVTSQVNTTIMAD ESCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIECMIGCMAEETTIG ITAAAHLAAAQKNITRADLDATFGLETAPVTGGVSLEAKPLLELGEAAGLGISH >gi|307679014|gb|GL456783.1| GENE 203 214372 - 215748 1077 458 aa, chain + ## HITS:1 COG:TM0007 KEGG:ns NR:ns ## COG: TM0007 COG1305 # Protein_GI_number: 15642782 # Func_class: E Amino acid transport and metabolism # Function: Transglutaminase-like enzymes, putative cysteine proteases # Organism: Thermotoga maritima # 5 455 1 438 438 318 41.0 2e-86 MKYDLKYLSVPLPEEIQRVKEFGDFASADIAIDFWLTKELPQALKERLIIEKDVIKMMRM NEYPHSFAKADQMMRDTFQDYQTEELIRLKETGLVDWVYIDGEPYFQLRFLANLIKTNAA YVARLREAESNQLEILRKKELKENIEQMQKNGGRKVRTTIKATIQVKKEFERPGERVRVH LPLPKACQQQSEIEILATSPEATYIAAEDAPQRTLCFETILKENQTFTVEYCYVNRMVYQ QLEENNVDKMQPSFDLEEQLPHIRFTPYLRNLADEIVGDESNPLKKARLIYDFVTTKIHY SFMREYFTISNISEYAATNLKGDCGVQAILFITLCRIAGIPAKWQSGLYVSTHYTGCHDW AQFYIEPYGWLFADLSFGGGAYRDGDRQRWNHYFGNLDVFRMVANSEIQADFQPAKMQLR ADPIDNQRGEFEYENEGLPYACLIVSQERLSMEELPFD >gi|307679014|gb|GL456783.1| GENE 204 215766 - 217418 1613 550 aa, chain + ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 2 550 3 549 549 553 52.0 1e-157 MKKLKMMGIMLFVSTVLVGCGTTAETKRDEKATEKTSVSKKVLNLMENSEIGSMDSIFTQ DEASINAQSNVFEGLYQLDEKDQLIPAAAKEMPEISEDGKRYTIKLREDGKWSNGDAVTA NDFVFAWRKLANPKNQANYFFLLEGTILNGTAITKEEKAPEELGVKALDDYTLEVTLEKP VPYFTSLLAFSPFFPQNEAFVKEKGQAYGTSSEMIVSNGPFLMKNWDQSAMSWDFVRNPD YYDKEKVKSETIHFEVLKETNTVYNLYESGELDVAVLTGDFAKQNRDNPDYEAIERSKVY SLRLNQKRNEKPSIFANENVRKALAYALDKKSLVDNILADGSKEIYGYIPEKFVYNPETN EDFRHEAGALVKTDAKKAKEYLDKAKAELNGDVAIELLSRDGDSDRKVAEFIQGQLQETL PGLTINVKTVPLNNAIELMRKGDYELSVGMWGPDYQDPMTFLESSVSGNRMNYSSPTFDQ LIEEATTKYANDPETRWQTLIKAEKVLVEEDAALIPLYQEARSQLVRPGVKGIQYHNFGA TSTYKYAYKE >gi|307679014|gb|GL456783.1| GENE 205 217728 - 218561 971 277 aa, chain + ## HITS:1 COG:BS_sacT KEGG:ns NR:ns ## COG: BS_sacT COG3711 # Protein_GI_number: 16080858 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus subtilis # 1 274 1 272 276 187 38.0 2e-47 MKIKKVLNQNAVLVLDEGQEKVAVGKGVGFNKTKNDVLSRQLVERMFVMEPEGLKKLQVL LSQIEDKYFLASEEIIQHAETVLGEKLNEHINIGLSDHIAFAAENIQNNIIVRNKLLSEI EILYSEEFAIAQWAVEYLTQTLEIPFSYDEAGYIAIHIHSARSGRTDNSKSIREVTIVSE IIHLIEQELAIDIHDDKNSLSYSRLVNHLRLFIHRFQQNQYAVLDEEILEVVKKKYAESY EISKKVQVLLMRNFHYQVPNEELGYLSIHIERLRMTK >gi|307679014|gb|GL456783.1| GENE 206 218598 - 220595 2599 665 aa, chain + ## HITS:1 COG:YPO2628_1 KEGG:ns NR:ns ## COG: YPO2628_1 COG1263 # Protein_GI_number: 16122841 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Yersinia pestis # 3 401 5 406 410 454 58.0 1e-127 MKAYMQRMGRSLMLPVAVLPAASLLVGIANWIVGTIGASPATTFLMNGGLAILNNLALLF AVGLALGMSKDKDGSAALAGLVAYLVPKTVLAPASIQAIKGFKDIAEVNPAFNSMDNNVF VGIVAGLVAAAMYNRFSGVKLPMALSFFSGKRLVPIMSAISMLAISAVLFFFWPVVYNGL VAFGKGISSLGFVGAGLYGFFNRLLIPTGLHHALNSVFWFDVAGINDIGNFLAGQQALDT GKAIVGQTGMYQAGFFPVMMFGLPAGAFAIYQCARPEKKKVTASLMLAAGFAAFFTGVTE PLEFSFMFVAWPLYVLHAVFTGISLAFAAFMHWTAGFAFSAGFVDFFLSLKNPVANHPMM LVVQGLVFAAIYYFGFRFAITKFNLMTPGREEGDGEETPDVADGDNKFASLARRIYDGLG ADANVTSIDNCTTRLRLTVKDTGKVDQAKIKATGVPGVKVIDDTNIQVIVGTEVQFVADE MQRLYNHQAPATPAKETPVSKPVVEEKAPVSTKETELYSVANGKVIPISEVPDDVFSAKM MGDGFAVVPTDGEVSTPVAGKITSIFPTKHALGIQTDSGIEVLLHMGLDTVELQGGPFTL HVEEGQVVKQGDKIATIDLAALEQAGKKSDLIVVFTNQDIVAQYDLQKAGQTTSMNDVIG NVTVK >gi|307679014|gb|GL456783.1| GENE 207 220836 - 221030 188 64 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229550064|ref|ZP_04438789.1| ## NR: gi|229550064|ref|ZP_04438789.1| conserved hypothetical protein [Enterococcus faecalis ATCC 29200] hypothetical protein EFOG_01108 [Enterococcus faecalis X98] conserved hypothetical protein [Enterococcus faecalis ATCC 29200] hypothetical protein EFOG_01108 [Enterococcus faecalis X98] HTH domain protein [Enterococcus faecalis TX0043] HTH domain protein [Enterococcus faecalis TX0312] # 1 64 1 64 64 84 100.0 2e-15 MSSKKERGQKLLLLLSKKQDYMTAEELANCLSTSPKTVYRLIKKLTMNFQKVHSYYLRKD EDTS >gi|307679014|gb|GL456783.1| GENE 208 221045 - 222316 807 423 aa, chain + ## HITS:1 COG:lin2243 KEGG:ns NR:ns ## COG: lin2243 COG3711 # Protein_GI_number: 16801308 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Listeria innocua # 14 419 83 485 485 270 39.0 5e-72 MEQNRHLVEKESDFSPRERRNRILEELLLASPQAKNVYELFARYYVGDSVIFSDEQQLSE DLKKYDLTLKRKNRTLAIIGEERAIRKAISDRIQLLNIIDIEDLRNNKALNFNNYDVLFT LDQVRNIEKKLDITIPHPYNVNIFSHLYILISRSRKVAIYEKYQLSNEEEQELTKDLVLK KVAQTTIQQIETYLNKRLPNVEIYYLYQYLVSSRMQGSFSKVTNFSFKVMQITQFYLEEM SAQLKILTDNDQLLLELASHIKPMINRLENGIHVKNSLLDQIKMTYETIFRKIVQVSKQV SKNYQLPAINEDENGFITLYFARMIETNQLPIRTLIMCTTGIGTSELLRVKVEKKFPELQ IVEIIATRNIKKSLKDYSDIELILTTIHLQEKVPIKSLLVSAMFTMDDQYRLQRKVEEIY HER >gi|307679014|gb|GL456783.1| GENE 209 222306 - 222758 515 150 aa, chain + ## HITS:1 COG:no KEGG:CAR_c23180 NR:ns ## KEGG: CAR_c23180 # Name: not_defined # Def: hypothetical protein # Organism: Carnobacterium_17-4 # Pathway: not_defined # 1 146 1 145 145 100 43.0 2e-20 MNVNPLYQVFLNQELLSKQQVYQFIAETATPLLTPEEKNQIEESLVNREKMGSNQIAEQI VLPHLENALLKKSEIYLIGLKTEIQEWTADIKQVKLIIVILLKENEQLKVKKEISRFTRK LANEDFLEKLLRLKTETDFYKIIEKFEEEK >gi|307679014|gb|GL456783.1| GENE 210 222758 - 223075 507 105 aa, chain + ## HITS:1 COG:SP1618 KEGG:ns NR:ns ## COG: SP1618 COG1445 # Protein_GI_number: 15901455 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system fructose-specific component IIB # Organism: Streptococcus pneumoniae TIGR4 # 1 103 6 108 108 125 79.0 1e-29 MKIVGVAACTVGIAHTYIAQEKLENAAKKAGVEIHVETQGTIGIENKLTDEQIKEADIVI LAIDVKISGRERFDGKRIIQVPTEVAVKSPTKLIEKAEEVMTQEK >gi|307679014|gb|GL456783.1| GENE 211 223095 - 223544 481 149 aa, chain + ## HITS:1 COG:SP1619 KEGG:ns NR:ns ## COG: SP1619 COG1762 # Protein_GI_number: 15901456 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Streptococcus pneumoniae TIGR4 # 1 148 1 148 149 167 55.0 6e-42 MEVKDIIDLKTVKTNMNVNTKEEALKELANLLLENGNISEEKGFIKDIYVREAEGQTGIG NYLAIPHGKSAYVKKIGVAIGINSTEIPWESLDDNGVKGIILFAVGNDHKETTSHLKLLS LFARKLGNDEVVKELLQSKSPEDVVKAFS >gi|307679014|gb|GL456783.1| GENE 212 223653 - 224753 1377 366 aa, chain + ## HITS:1 COG:SP1617 KEGG:ns NR:ns ## COG: SP1617 COG1299 # Protein_GI_number: 15901454 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Streptococcus pneumoniae TIGR4 # 4 366 2 361 361 404 67.0 1e-112 MKKLKELNLKGHLLTAISYLIPIVCGAGFLIAIGMGFGGSSQGTLVPGEFSLWDALATMG GAGLGLLPVVISTGISFSIAGKPGIAPGFIIGLTANAVGAGFIGGILGGYLAGYLVLAIL KYVKLPNWARGLMPTLIIPFLTSITGGLIMVYIIGTPITAFTSLLTNFLDSLGNSSLLIF GGVIGLLSGIDYGGPINKTVFAFVLTMQAEGLNGPITALQLVNTATPIGFGLAFFFAKLF RKNIYTKLEVETLKSAVPMGVINIVEGVIPLVMNDIVRGVIATAIGGFVGGATTMILGAD ATVPFGGVLMIPTMSKPLAGVIAIVVNAVVTGLVLAIIKKDVTEKDMEALVEKEEEEINL EDIQIF >gi|307679014|gb|GL456783.1| GENE 213 224891 - 225580 666 229 aa, chain + ## HITS:1 COG:SP1616 KEGG:ns NR:ns ## COG: SP1616 COG0036 # Protein_GI_number: 15901453 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Streptococcus pneumoniae TIGR4 # 1 229 1 229 231 380 75.0 1e-105 MNKVEFSPSLMTMDLDKFKQQITFLNDHVASYHIDIMDGHYVPNITLSPWFIEELRKISK LPVSAHLMVTNPSFWVQQLVDIKCEWICMHAEVLDGLAFRLIDQIHNANLKAGIVLNPET PIESIFPYIELLDKITIMTVDPGFAGQRFIEGTLDKIVALRNLREEKGYRYVIEMDGSSN RNSFKRIDAAGPDIYIVGRSGLFGLDEDIEKAWKMMSRDYEEMTGKKIP >gi|307679014|gb|GL456783.1| GENE 214 225904 - 226488 813 194 aa, chain + ## HITS:1 COG:SPy1147 KEGG:ns NR:ns ## COG: SPy1147 COG0741 # Protein_GI_number: 15675124 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Streptococcus pyogenes M1 GAS # 2 194 12 197 199 156 45.0 2e-38 MLLLFVGLVAGLGYLGYKIHQNVETVMTFEKQVEAEVKKNKIPEYKTLALAIIYTESKGK SGDIMQSSESVYGQQEVIETPEESIAHGVKFLAEALAKAKEAGCDEWTGVQAYNYGLDYI QFVKERGGKHTTELAEEYSREVLSPLLGNDQNTKYRYYRWQALVYNGGYLYQNGGNMFYA EIVKMNRWFIEKLN >gi|307679014|gb|GL456783.1| GENE 215 226617 - 228953 2583 778 aa, chain + ## HITS:1 COG:SP1623 KEGG:ns NR:ns ## COG: SP1623 COG0474 # Protein_GI_number: 15901459 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pneumoniae TIGR4 # 10 770 8 778 778 672 48.0 0 MLNKVDLKKGLSTEEVAKQKELGLQNNYEENVAKSTKDIIFDNVMTLFNFLNFAIAVCLL FVGAYSNLAFLAIIIVNMSIGIFQEIHARNLVQKLSIVAKENVHVVRNGVQQEIDTKELV MEDIVIISAGEQVPSDMEVIDGKVEANEALLTGESDLIEKEIGDTLLSGSFIVSGQAYAR VIHVGAENYAVKITQEAKVHKPIQSELVNSIRKVSKFTSWVIIPLGIILFVEAFWLRDAG IKTSVVASAAALLGMLPKGLVLLISIALTTGVIKLAKKRILVQDMYSIETLAHVDTLCLD KTGTITEGKMKVQKAIILHDKYEELFPQIIGSYLSESTDNNITMQAIRDHYEVSNRFGAK EVLAFSSERKWGAIEFPEIGTVYLGAPERLVDDSRLPEAVFTAQENGYRVLMLAIAEQQP LNETKMPYLEPLAILEIDDPIRQNAKETLAYLKEEGIDLKVISGDNPVTVSNIARRAGLP GYESYIDLSTKTTEAEVREAVQQYTVFGRVSPQQKRTIVRELKDTEHVVAMTGDGVNDVL ALREADCSIAMAEGDGATRQISNLVLLDSDFTTLPDVLFEGRRVVNNVTRVSSVFFIKTI YSFILSIICALTAIAFPFIPIQVTLIDLAIEGYPAFFLSFEGDKRKVVGKFLPTALKNAS VNALLVVANIIAVYLIGQNQGFSSLDTTTLMYYLLVGISCMAVVRACLPLNPLRIFLVFS TIIGIYVAAMLFHNILEIGFLTSQTMGLFFIMMAINIVVRVTIGFVQMKRAGKTIKDL >gi|307679014|gb|GL456783.1| GENE 216 229269 - 231155 1815 628 aa, chain + ## HITS:1 COG:lin1492 KEGG:ns NR:ns ## COG: lin1492 COG0358 # Protein_GI_number: 16800560 # Func_class: L Replication, recombination and repair # Function: DNA primase (bacterial type) # Organism: Listeria innocua # 4 623 3 622 626 451 41.0 1e-126 MAQRIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKNYMGLCPFHEERSPSFSVAEDKQIFH CFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVADTPENQQRRSLL QLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKNEQ LDETLFEPSGLFVQRDNGTFLDRFYQRIMFPINDPQGNIIAFSGRLLKTADFPGDEMPKY LNSPETTLFNKRETLFNFDKARKEIRKENTVLLFEGFMDVIAAWQSGVKSGVASMGTSLT NEQIRRLERVAKEVVICYDGDNAGVQATNRAIQLLQENSHFDLSIVSIPEKLDPDEYVRK YGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELLRELTNVQSPLERDRY LNQIAQEFQLSVHSLEEQFNQLKQEQRSVQRQERQQFYQDEMMPPPMEEPVFEENHVQNK LPLTQVQKAERSLLFRLMNEQGVRQTVQQLPDFSFAHDEYQELYFLLESYATLHQSFDIA DFINFLQDNQTKQLAIEIAYQNLSEESSEREVADLLHVIALSSIAEAIEQKKIQQQEAKR VGNQQLEAELTMEIIQLARQLKAQRTFT >gi|307679014|gb|GL456783.1| GENE 217 231263 - 232369 1454 368 aa, chain + ## HITS:1 COG:lin1491 KEGG:ns NR:ns ## COG: lin1491 COG0568 # Protein_GI_number: 16800559 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Listeria innocua # 10 368 17 374 374 494 79.0 1e-139 MEKETSKKYEAAVAAFIKENKPKGTVVYDDLANQLATPYTLDAEAMEKLIQKVEDAGISV VDENGDPSEHSLKKDEKEAEKAQAEDLSAPTGVKINDPVRMYLKEIGRVQLLTAAEEVEL ALKIEEGDQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKG FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIG AEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQL EDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS KQLKDFLE >gi|307679014|gb|GL456783.1| GENE 218 232521 - 234596 2379 691 aa, chain + ## HITS:1 COG:no KEGG:EF1523 NR:ns ## KEGG: EF1523 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 691 1 691 691 897 99.0 0 MTKKCPKCGNEFDAELTTCPTCGYSLTDTTVDKEEAETTSTNIDFETQENEEHEDQLNEN IEWSELKDMSLGHVMELFGESPEEESNDDKKEESTEDNLIVSDSEDVSGLEASLQEGASE ETHDSVEESIPATEETPTHSTEEKLATDEAVNLEETTEETTEETTTVEAETAEVSETVKS EEETLTEISGTEVISTTSEEEIFSQPPIEDQDVTPNETLQAYIQAHRADTEMSENPSEET AETQELENSGEAVLTQAETPTESISDSEEGLTSAASLEAPSEADATEEKVSDSGVIPPMN ETGNAQPAPAPKKPSKKVVFVALAVVLLAGGSAWAYHDQTQKAAAQEAAALTKKTDTLKD ELAAFYTTKEQVFIKPDMVTVSPEKLSKQVAEIKDSEEYSQLNKQIQTLKEKQQTIQQIN QLFEAPIVNGNELKPAILAADQPISVKKLTGNDPFDQLMNQAIDQANQQYNQLQKAKKAV EVIYKDGKTTNQLNRDTYQAAKAEVDKVTSDKLKKELVKQVTTADQALTKVEEEQKRIAE EQAAAEQAKQAEEQAKQAAAAKKENAKKEETAKTEANGYTAPNSDGVYTSPLYAPDAADI ADSSNPAWTWAPGVKEKVLDTVIARGYVVPGGYSLEPAKIVNGEGYYNLYATNNQSKLLE GTTEKNVHMYLVTINAKTGWFKGNASRNAGQ >gi|307679014|gb|GL456783.1| GENE 219 234670 - 235551 525 293 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains [Anoxybacillus flavithermus WK1] # 14 284 10 281 285 206 41 1e-51 MRELLATTFTGIVVDENEQFYFVQKNGITFRLKKEEGTHAIGEAVEGFGYLNQKQEPALT TTIPTVRIGSYGFGTVTGTRRDLGVFVDVGLPDKDVVISLDELPTMRELWPKKEDRVMVT LKVDSKDRIWGELADEKVFKAMAKRGNAEMQNKNLTGHVYRLKLAGTYILTDDLYIGFIH PSERFQEPRLGEKVVGRVIGVRPDGVLNLSLKPRSHEVISDDALMILTFLERANDHQIPF TDKSSPDEIKQTFGISKAQFKRALGHLMKQKLIKQEDGKTILIGSLEQSKEKN >gi|307679014|gb|GL456783.1| GENE 220 235667 - 236116 510 149 aa, chain + ## HITS:1 COG:lin2070 KEGG:ns NR:ns ## COG: lin2070 COG0735 # Protein_GI_number: 16801136 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Listeria innocua # 9 148 7 146 152 201 70.0 3e-52 MDSTAALKKTKKQLHESGFKLTPQREATVLVLLENEKDHLSAEEIYFLVKQKSPEIGLAT VYRTLEILTDLKVVDKVSFNDGLARYDLRKEGAKHFHHHLLCLECGTIEEVEEDLLGEVE QIVESRYHFLVKDHRLTFHGICQSCQSKH >gi|307679014|gb|GL456783.1| GENE 221 236167 - 237177 1198 336 aa, chain - ## HITS:1 COG:ECs2022 KEGG:ns NR:ns ## COG: ECs2022 COG0057 # Protein_GI_number: 15831276 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Escherichia coli O157:H7 # 4 336 3 333 333 457 69.0 1e-128 MTVKVGINGFGRIGRLAFRRIKEVSDDIEVVAINDLTSPTMLAHLLQFDSTHGTYPGTVT ATENGIVVDGEETRVYAEPDASKIPWVKENGVDIVLECTGFYTSEEKAQAHLDAGVKRVV ISAPAGAMKTIVYNVNDDTLDANDKIISAGSCTTNCLAPMAYFLNNEFGIEVGTMTTVHA YTSTQMLLDGPVRGGNLRAARSAADNTIPHSTGAAKAIGLVIPELNGKLQGHAQRVPVVD GSLTELVSILKTKVTADQVNEAMKKHTIDNPSFGYDDREIVSGDIIGTTEGSIFDPTQTE VTTAGDFQLVKTVAWYDNEYGFTCQMIRLLEKFANL >gi|307679014|gb|GL456783.1| GENE 222 237465 - 238781 1865 438 aa, chain + ## HITS:1 COG:SP1079 KEGG:ns NR:ns ## COG: SP1079 COG0536 # Protein_GI_number: 15900948 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Streptococcus pneumoniae TIGR4 # 3 438 1 434 434 610 77.0 1e-174 MSMFLDQVTIDVKAGKGGDGMVAFRREKYVPDGGPAGGDGGRGGDVVLVVEEGLRTLMDF RFNRHFKATPGENGMSKGMHGRGSEDLLVKVPPGTTVRDAETGALIGDLIENGQTLVVAK GGRGGRGNIRFASPRNPAPEIAENGEPGQERKIELELKVLADVGLVGFPSVGKSTLLSVI SSARPKIGAYHFTTLVPNLGMVTTSDGRSFAAADLPGLIEGASQGVGLGTQFLRHIERTR VILHVIDMSGMEGRDPYEDYLAINKELASHNLRLMERPQIIVANKMDMPEAEENLAKFKE QLAKERTDEYADELPIFPISGVTRKGIEPLLNATADLLEVTPEFPLYEDEVVEEETVRYG FQPEGPEFTIDREPDASWVLSGEKLEKLFEMTNFDHDETVMRFARQLRGMGVDEALRARG AKDGDIVRIGNFEFEFVE >gi|307679014|gb|GL456783.1| GENE 223 238920 - 239222 323 100 aa, chain + ## HITS:1 COG:no KEGG:EF1528 NR:ns ## KEGG: EF1528 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 100 1 100 100 139 99.0 4e-32 MENNQAMVPKFSVKSAGFLFSMGLLCGVLLPSVLLWTFNLPFNIGAMIFLPVGIAFALAY SHYFIETKTGFCKRFIWLFLISLILLELISYLWLIKGVIF >gi|307679014|gb|GL456783.1| GENE 224 239249 - 240547 1509 432 aa, chain + ## HITS:1 COG:VC1282 KEGG:ns NR:ns ## COG: VC1282 COG1455 # Protein_GI_number: 15641295 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Vibrio cholerae # 1 426 6 428 446 275 38.0 9e-74 MLDKLTVWIENHLAGPMAKIANQRHLRAVRDGIIATLPLIIVGSFFLIIAFPPLPESWGI TQFLTSNAATILLPYRMTMYIMALYATFGIGASLAKSYNLDQVSGGILATIAFLLTLVPV AIPEEASKAAGVSGFVLPMANLGGAGMFVGIVTSIIAVEIYRVTDKSKFKITMPDNVPPA VARSFESLTPTLIVMLLIGSITYYLGFDWHTFVGNLVGPLVQAADSLLSVLLLVFLTTFF WFFGIHGASIVGSLARPLWLQLLEENTTAKAAGEALPRIAAEPFYQWFIWIGGAGATIGL AILLAFRAKSEYGSKLGKAILAPSIFNINEPVIFGVPIVLNPILMIPFIFAPMVLATIAW FATKLGLVSEVVFTAPWTLPGPIGAFMATGGDWRAAVLNIVLILVAILIYYPFFVAYDKN ELAKEQGKQIEE >gi|307679014|gb|GL456783.1| GENE 225 240772 - 241311 660 179 aa, chain + ## HITS:1 COG:no KEGG:EF1531 NR:ns ## KEGG: EF1531 # Name: not_defined # Def: TetR family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 179 1 179 179 305 98.0 6e-82 MVRTKVYTKEKILNVAEKILVDKGFSNLTARNIADTMGISTQPIYLEFVNMDDLKRTLIK SLFHRMQLFYKVDVGASDPVIALGLNFILFAQKHQKIYTALFMKAHGYEEELQQMLQDFF EERLLLDKKYVQMDKGKFVELFPKMVVIYLGLATAVTMKTIDLTKNQEIQLLSQLLIEE >gi|307679014|gb|GL456783.1| GENE 226 241454 - 241828 523 124 aa, chain + ## HITS:1 COG:SA0358 KEGG:ns NR:ns ## COG: SA0358 COG5294 # Protein_GI_number: 15926072 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 102 5 100 122 61 37.0 3e-10 MKFIKFLVVTAIVIGGGLFGAKFYAEKNSGELAGVLDQLNPLVKEGNVYVKTKKADSVNG YGIASYTQVAADEEGKTREITFTADHELKTDHYLKVSNKGAHINTYEEVNQDQVPEKALQ AIQK >gi|307679014|gb|GL456783.1| GENE 227 241872 - 242621 852 249 aa, chain - ## HITS:1 COG:lin2475 KEGG:ns NR:ns ## COG: lin2475 COG0652 # Protein_GI_number: 16801537 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Listeria innocua # 57 243 4 193 194 238 62.0 7e-63 MKHKKMLAVASVAAFTLLLAGCNTTNNKGTTATSDSVAKSSESKTKDSVDLNSLDLPQLD DKVAEDQDLVQMVTSMGNIEIKLFPKQAPKTVENFMKHAKDGYYDGLTFHRVINNFMIQG GDPSGDGTGGNSIWNKPFEDEFSNQLYNIRGALSMANAGPNTNGSQFFIVQNTDDQSDGL LYDDYPKAIIDAYKKGGYPSLDKKHTVFGQVTKGMDIVDKIAKVEVGANDKPKTDVKIEK INILQEAKK >gi|307679014|gb|GL456783.1| GENE 228 242803 - 243894 1412 363 aa, chain + ## HITS:1 COG:L176316 KEGG:ns NR:ns ## COG: L176316 COG3589 # Protein_GI_number: 15672155 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 363 1 363 364 575 76.0 1e-164 MGKLGISIYPERSTFEKDKAYLDLAHKYGFKRVFTSLLQINDDREKVLAEFKKVVDYANQ LGMEVMVDINPALFEQLGISYDDLSFFHDMGAYGIRLDLGFTGQEEANMTRNPYGIKIEI NMSSGTSYVDNIMAYSPNTENLLGSHNFYPHRYTGLGYDHFVYCSEKFRKYNLNTMAFVN SHDATFGPWPTQDGLCSLEDHRDLEIATQVKHLVLTGLIDDISVGNAYASEAELAAMAEA FHAPYPSIKVDTEPEITEDERIALFDNLHSYRGDRSDYVLRSTMTRVYYKDRPFPAHTTR DIVRGDVLIDNVGYGQYKGETQIALKEMKNDGRVNVVGRISDDERFLLEFLKPWSSFKLI ENK >gi|307679014|gb|GL456783.1| GENE 229 244089 - 245018 1136 309 aa, chain + ## HITS:1 COG:lin2180 KEGG:ns NR:ns ## COG: lin2180 COG1073 # Protein_GI_number: 16801245 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Listeria innocua # 7 306 11 317 319 289 47.0 5e-78 MNRWLKILIALIVVIAIGLIAAGLYFYNYAVVPGKKDFINENTPGSKVVQTPEGAWFKDD KNRQEWSITSEDGLRLKAIYLPADKKSNRTVIMAHGYMGSAETMSVFAKMYHDWGYNVLA PDARGHGKSQGDYIGFGWPDRKDYVQWIEKVLTENGQQEQITLYGVSMGAATVMMTSGEK LPDNVKAIVEDCGYSTVNQELQYQLKELFNLPSFPLVNVTSGITKLRAGYFFGEASAVKQ LQKNHLPMLFIHGENDTFVPFSMLDEVYNATQGPKEKYVVPGAEHAKAYNKNPEKYKETV AAFLDKYIK >gi|307679014|gb|GL456783.1| GENE 230 245187 - 246077 1042 296 aa, chain + ## HITS:1 COG:BS_ripX KEGG:ns NR:ns ## COG: BS_ripX COG4974 # Protein_GI_number: 16079408 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Bacillus subtilis # 1 296 1 296 296 317 53.0 2e-86 MEEQLVDYLHYLQIERGLSNNTRRSYERDLKKYVAFLQEQGLHSWDEVDRYMITEFLQSL HEEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDEVTRLI ETPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLG DYAIQWIERYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREARIEKNIT PHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEHFPRA >gi|307679014|gb|GL456783.1| GENE 231 246151 - 246936 937 261 aa, chain + ## HITS:1 COG:lin2065 KEGG:ns NR:ns ## COG: lin2065 COG1354 # Protein_GI_number: 16801131 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 242 1 239 249 195 48.0 6e-50 MQEINLKLDVFEGPLDLLLHLIQKLEIDIYDIPITAVTEQYMSYIHAMQTLELEVAGEYL VMAATLMAIKSQMLLPKQELEIIDDENFFEEEDPREALVAQLLEYRKFKYAATVLHEKEE ERKLYYTKEPMDMDDYKEEDTTLPPNQINTIDLFLAFHAMLEKKKNRQPVETTVASDDVS IEEKITAISERMRQVQKGKAVSFDSFFDSYSKQEIVTTFMALLELMKTGVIYAEQENNYS EILLFNTETQQEDTTEVEETQ >gi|307679014|gb|GL456783.1| GENE 232 246933 - 247538 765 201 aa, chain + ## HITS:1 COG:SPy0367 KEGG:ns NR:ns ## COG: SPy0367 COG1386 # Protein_GI_number: 15674517 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing the HTH domain # Organism: Streptococcus pyogenes M1 GAS # 1 175 1 175 183 162 50.0 4e-40 MTLVSQIEAILFVVGEEGIGLEELAYLLEKSTAKTYEELTKLKEHYASDNKSALNILEVG NHFVLTTKKKYASLLKKYAQSPMSNALSQAALETLSIIAYKQPISRIEIDEIRGVQTSGS IQKLVARQLIEEKGRVDGPGRAILYGTTKYFMDYFGLKSLDELPDIQQMEDELEEELPMD LFFDRYQETNPMSETTEGEEA >gi|307679014|gb|GL456783.1| GENE 233 247542 - 248258 995 238 aa, chain + ## HITS:1 COG:SP1874 KEGG:ns NR:ns ## COG: SP1874 COG1187 # Protein_GI_number: 15901702 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Streptococcus pneumoniae TIGR4 # 3 237 2 236 240 285 63.0 7e-77 MERLQKAIAHAGVTSRRKAEELIVKGRVKVNGQVVKELGTQVSKQDTVEVDGVPIYQEEY GYYLFYKPRGVISAVSDDKGRKVVTDYFTDVTERIYPVGRLDYDTSGLLLLTNDGSFSQK LTHPKHEVDKVYVAKIKGVPTKRDLLPLAKGIRIDGKRTAPANFQILSADIKTGSSVVEL TIHEGRNHQVKKMFQAVGFPVQKLKRERYGELTLQGLRPGQYRDLTKKEISQLLNQAK >gi|307679014|gb|GL456783.1| GENE 234 248603 - 249268 646 221 aa, chain + ## HITS:1 COG:lin2059 KEGG:ns NR:ns ## COG: lin2059 COG3601 # Protein_GI_number: 16801125 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 22 216 3 192 203 114 34.0 2e-25 MTKKRIKKFVEDGSLIGGFQMNNKVQKMVSIAMLAAIGTVLQFVAFPIMPAFSFLKIDFS DIPILLGMFLYGPLAGVITAFVRSLLHLFLTGLAPQNMVGDFASFLASSIFTLPIFYFFG KKKNIRTNRIVGLVSGILALTIFMSIANYFVITPVYLQLYGVTTQQFLGTSLASYVAIGI VPFNLIKGLLVSGVFLVLHAKLLPWLSKKQHTIQKKTPLTK >gi|307679014|gb|GL456783.1| GENE 235 249449 - 250855 1263 468 aa, chain + ## HITS:1 COG:BS_yvbJ KEGG:ns NR:ns ## COG: BS_yvbJ COG4640 # Protein_GI_number: 16080441 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 4 292 4 295 605 103 21.0 6e-22 MKKCKNCRHVNRDTESFCEECGAPLMNESMHQEENQAQPSMNKGNESTPLRSKRSWIWVF LFVFIVLGAGSYFLGTHYFSKEQQISHFIEAIENGDAQELSKKMRTNESEFQVNPQSIKP LITYYQKNPTELKKLEKALLKDKKLHGLTIRETSQTAFFFHRYQFILTPVSVQLTTNQRG VTLAMNGREVGTSDSTTYQKELGPLAPGQYTFTATVKDSTGEPVITEEYRLLEEENYISS IPLDFKRMNFVVESNLPDADIYINDRKVGTLTNGSKTIGPLFWSKGMTIQLKKTINGEEI QTSKETIGENDFVEALSDNPTLQLNFPLASDYDARKALETFYQAFAKQVKSHTDSTEFAK KYLVGGENNPQFPSFIESLERLREKKSTDVSPDFEVTINTLQLDGKENYHVNYYLEAKNS KAKENGLRYEWINGLNDQIHLVKEPLKEGQLQFVSIDEQTLAWLEKIL >gi|307679014|gb|GL456783.1| GENE 236 250878 - 251096 197 72 aa, chain - ## HITS:1 COG:L176167 KEGG:ns NR:ns ## COG: L176167 COG1141 # Protein_GI_number: 15673687 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Lactococcus lactis # 1 70 1 67 67 66 42.0 1e-11 MQSRLVPEKCIACGLCQVYAPNIFDYDDHGIVLFKDEPHARQQFIPENERENVLKAYRKC PTRAIEISKNEC >gi|307679014|gb|GL456783.1| GENE 237 251132 - 252166 727 344 aa, chain + ## HITS:1 COG:BH1606 KEGG:ns NR:ns ## COG: BH1606 COG4955 # Protein_GI_number: 15614169 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 21 337 26 347 359 84 25.0 4e-16 MEATFILALLSHGYKVRASTLYHLLKGKRTSSVLIYGFLYDCLRFIGWWPTISEQAFFQF LEKLSKAKQIQYHKETNEIQLTKEGQLFLKEHHFSLLDYPAIDLYRFGRSDRESWQLIQF AVQVTSYLSFEEKQYIPLLSTPIPQLYLKRWLQQDKKEQRVQSIKEELLRGFELLPEAES DYLVAQLSGYQQTGKVPQQLTSHKTALEQRLWHTQAVHHLLQLIMYGGNYPALQTLVWPY LEKNLNQSMQETQRLLTEGKTLQEIAEQRKIKPSTIHDHLLELAIQGQLQASVYLEKEAM LQKLAQIEQDPRLWVYRDWRAQEATLSYLDFRLYQIQQIWQEKE >gi|307679014|gb|GL456783.1| GENE 238 252173 - 253609 1229 478 aa, chain + ## HITS:1 COG:lin2056 KEGG:ns NR:ns ## COG: lin2056 COG0514 # Protein_GI_number: 16801122 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA helicase # Organism: Listeria innocua # 1 468 1 460 467 346 42.0 7e-95 MTLEQELFTRFGYAAFKPGQKEVITNLLDGMNTLAVLPTGTGKSLCYQFVGQKLEGLTVI VSPLLSLMEDQVRQLQRQGIKGAVALNSTLQYSEKRYILAKMFQYDYLFLSPEMLLQQEV LSVLQRQKIALFVVDEAHCVYQWGVDFRPEYSKLDLVQKQLDFPLTLALTATATPVVQHA IIKQLFSHGSYQEVLSSVNRKNIGLFVKETLEKEEVLLDYLSKTAGKIIIYCATRNKTEQ ISQLIQAKTSFKVAYYHGGLEASERSRLQEQFIDNQIDILCATNAFGMGIDKPDVRGVIH FDLPDSLENYLQEIGRAGRDGQKSWALLLYKKGDEFIHRFFLEETRANRATLKSLIEGEE QAGLLENATELQQKWVQGYLAKDYSFEELEHRLEEKEKDRQAQLRGMLTYIETTTCRRTL IQTYFQEPIVKQSPETCCDNCALFFDIYQDSIVKSNKTSNQNEGGWRSKFLKLFKERD >gi|307679014|gb|GL456783.1| GENE 239 253685 - 254308 799 207 aa, chain + ## HITS:1 COG:no KEGG:EF1546 NR:ns ## KEGG: EF1546 # Name: not_defined # Def: LysM domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 207 1 208 208 165 95.0 1e-39 MSKKDKKKNQAREPWEQSIYEPDQNGGGSRLAKRQQQRGNSLFLTVLVILLLLIIAIPIG TFLWMMQDKKPNESASKNSQPSSSLVQSSSKEKKKESTSKSVESSEPASSQPAENTTPSS SDAAAQQQQDQQAQQQQQQQQEQQQQEAQNQQQQQAQNQQPVYDTVQSGEGARQVAERNG MTLEQILALNPGIDTSVFYPGQPLRIK >gi|307679014|gb|GL456783.1| GENE 240 254544 - 255224 868 226 aa, chain + ## HITS:1 COG:SP1603 KEGG:ns NR:ns ## COG: SP1603 COG0283 # Protein_GI_number: 15901443 # Func_class: F Nucleotide transport and metabolism # Function: Cytidylate kinase # Organism: Streptococcus pneumoniae TIGR4 # 1 215 1 216 223 240 63.0 1e-63 MGKISIAIDGPASSGKSTVAKILAKQLNYVYCDTGAMYRAITYLALQNQIDIQAEEPLVA LCVNHTISFQQAENGQRVFIDGHEVTEAIRQPDVTNAVSAVSKHAKVREEMVALQQKIGQ AGGVVMDGRDIGTAVLPKAEVKIFLVASVEERAERRFKENQEKGIETDFETLKAEIERRD YLDSTREVSPLVQASDAVKIDTTGLTIEEVVAAIQNVIKQKGFELF >gi|307679014|gb|GL456783.1| GENE 241 255338 - 256549 2026 403 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229550028|ref|ZP_04438753.1| 30S ribosomal protein S1 [Enterococcus faecalis ATCC 29200] # 1 403 1 403 403 785 100 0.0 MTDFEDKQVANNETMEDAMNSVQEVSVGDIVKGEVLAIEDKQVVVGIEGAGVEGVVPAKE LSTLPVEDVHELVKVGDVLDLVVITSIGKDKENGSYLLSKRRLDAKKVWEEIEQDFQAGK VIEAPVTNVVKGGLVVDVGVRGFVPASMVEDHFVADFSEYKGQTLAFKIIEIEPSENRLI LSHKAVVEAEKESKKEELLSSLHDGDVVEGKVARLTDFGAFIDLGGVDGLVHVSEIAHQH VGKPSDALTVGEDVQVKILSINPDEGRISLSIKETLPGPWTDIETKAAAGTVLDGTVKRL TSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDQVQVKVLEVNPEEHRIALSIKA LEPKPESQEEPKEEQEYELPEENTGFTMGDILGDALSDAKEEE >gi|307679014|gb|GL456783.1| GENE 242 256723 - 258033 1818 436 aa, chain + ## HITS:1 COG:SP1709 KEGG:ns NR:ns ## COG: SP1709 COG1160 # Protein_GI_number: 15901543 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pneumoniae TIGR4 # 1 436 1 436 436 692 78.0 0 MANPTIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGG IDLGDEPFMDQIKHQAEIAIDEADVIIFVASGREGITDADELVAKILYRSNKPVILAVNK VDNPEMRNDIYEFYALGLGDPFPVSGSHGLGIGDVLDEAVKHFPNTSEEEDEDTIKFSLI GRPNVGKSSLINAILGEDRVIVSDIEGTTRDAIDTYFESEEGQKFLMIDTAGMRKRGKVY ESTEKYSVMRAMRAIERSDIVLMVLNAEEGIREQDKRVAGYAHEAGRGIIIVVNKWDTVK KDTNTMRDFEAEIRDEFQYLDYAPIIFVSALTKQRLNKLPELIETVSMNQNLRIPSALLN DVVMDAVAINPTPTDKGKRLKIFYATQVAVKPPTFVIFVNEEELMHFSYARFLENQIRKA FTFEGTPIKIIPRRRK >gi|307679014|gb|GL456783.1| GENE 243 258281 - 258556 179 91 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 [Haemophilus influenzae PittEE] # 4 91 6 93 96 73 38 1e-11 MANKAELIENVASSTGLTKKDATAAVDAVFSTIQETLAKGEKVQLIGFGNFEVRERAARK GRNPQTGQEIQIAASKVPAFKPGKALKDAVK >gi|307679014|gb|GL456783.1| GENE 244 258863 - 259903 873 346 aa, chain + ## HITS:1 COG:no KEGG:EF1552 NR:ns ## KEGG: EF1552 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 346 1 346 346 681 98.0 0 MKYNYSRGENKVAIIYGETFASVLKKRPVTTESIVVLANQRYYDLFSEKINYAFGEQLGL NWYICRNDVHCNDLSELESVLRFLADWPENQDVLLIGLGNEGVLQLTAFLHQVSKCSSKC WLMPVSVQALRQGLLPSVTIQQAQHATMHIENHSEEILFDSTLTNKKGAAPLIDLLVFIR AGLVCDYTYLQMLYQTYPDKKRLNQTSFNGILDELLSLYEQAGEKVDQFGRVFEAAFATT ENGHLLSGPMKRLLGLLLQVLWSQQVNHFDFQFKNFIVWFIRLGFPVAFPKEILSADYAE QVLAHTETLGPPMVLEKIGQLGAALKPTPDQLLTTIERYQEILKEI >gi|307679014|gb|GL456783.1| GENE 245 259913 - 261169 1801 418 aa, chain + ## HITS:1 COG:SPy1012 KEGG:ns NR:ns ## COG: SPy1012 COG0457 # Protein_GI_number: 15675015 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Streptococcus pyogenes M1 GAS # 1 412 1 406 415 240 40.0 4e-63 MSYSEKMVQALQAENLAEAQLMFEEALKKDDENTLADLGETLLSLGFLEEAKQIFQQLLE QFPDADGLNIPLAEIAIENNEIDDAFIYLEKIPETSDSYIQSLLVTADLYQVLGIPEVSE AKLKEAANLMPEEPLIQFALGELYFTNGQFVEAITRYQSIVESGTAQISAISLNERLGSS YSMLGDFEEAVPYLEAAVKEEQTDDRLFQLAFTYLQLHENQKAITLFQQLKTLNPHYQSL YLYLAEALQEEEQLEEAKAVIEEGIAENPFQVELYQFASENAYRLHDIAGAENWLLKALE LGEKTDESRLTLSNLYITEERFEEVITILNDLEETDHPYAEWNLAKAYNELENFAVAKVH YEQAAQELSHEPEFLKEYALFLREEGELEKAKHLLYHYLEHEPGDVDMQSVLADMEER >gi|307679014|gb|GL456783.1| GENE 246 261179 - 261718 617 179 aa, chain + ## HITS:1 COG:lin2035 KEGG:ns NR:ns ## COG: lin2035 COG5582 # Protein_GI_number: 16801101 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 3 179 5 179 181 118 38.0 5e-27 MFVSLSEKKKFLTWLVNTVPFGRREVLWILNYLLTHDAILNNVHFVENVEKTDRGIRVVA DGLGKEPLLLFIQAQEFTDPEQIFHEIRMNWRKALYLECVFPEAWQTSQYLSVLEDNPFA PWNEQVDQEVARAIDQYFKQEEQTQRMALIKAQIDDALETGNKEAFLELSDELNRLKQQ >gi|307679014|gb|GL456783.1| GENE 247 261756 - 262640 902 294 aa, chain - ## HITS:1 COG:SPy2153 KEGG:ns NR:ns ## COG: SPy2153 COG1284 # Protein_GI_number: 15675895 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pyogenes M1 GAS # 14 279 16 281 290 280 52.0 3e-75 MEEQRFYFKDVLFIVLGSCIYAFGLVTFNIANDLAEGGVTGITLILRALFHFNPAYTTLL INIPLLLIGGKILGKRSLYYTLIGTVSLSVFLWFWQKFPVEINLDHDLLIAALLAGLAAG FGSGLVYRVGGTTGGTDVIARIFEKYFGISMGRSLLLFDVAVLLLSLTYIDVKRMMYTLI VSFVFSRVVDSVLDGAYAAKGILIVSNHSEEIGQSLMASLERGGTYLNGEGAYSQVEKRV LYTVVSPREIMEVKRIANEIDEKAFVSIINVHEAIGEGFTYAKPSKQRRFKLKQ >gi|307679014|gb|GL456783.1| GENE 248 262764 - 263114 426 116 aa, chain + ## HITS:1 COG:SA1292 KEGG:ns NR:ns ## COG: SA1292 COG1694 # Protein_GI_number: 15927040 # Func_class: R General function prediction only # Function: Predicted pyrophosphatase # Organism: Staphylococcus aureus N315 # 7 110 2 105 105 121 65.0 3e-28 MSESEQRSLQSMQTEVDDYIQQFKTGYFSPLGQMARLTEEVGELAREVNHYYGEKQKKAD EKPKTVSEELGDVFFVLISMANSLEIDLTEVFEENMAKFNKRDRYRFERKDGKTHD >gi|307679014|gb|GL456783.1| GENE 249 263107 - 263886 1009 259 aa, chain + ## HITS:1 COG:SP1555 KEGG:ns NR:ns ## COG: SP1555 COG0289 # Protein_GI_number: 15901398 # Func_class: E Amino acid transport and metabolism # Function: Dihydrodipicolinate reductase # Organism: Streptococcus pneumoniae TIGR4 # 2 259 3 255 255 327 63.0 1e-89 MIKIIVAGFKGRMGSTATQMVLETADFELVGVYDPHEAQETVSFNDETAIPVFQRLEEVL AVKPDVWIDFTVPEAAYPNTRFALEHGMAPVVGTTGFTEEQINELTNLSREKAIGGLIAP NFAIGAVLMMQFAQKAAQYFPDVEIIELHHDNKLDAPSGTAIKTAEMIQEVRPAKKQGNP QEVESIPGARGADFEGLRIHSVRLPGLVAHQQVQFGSVGEGLTIRHDSYDRRSFMTGVAL ACRQVVQRTELLYGLEQML >gi|307679014|gb|GL456783.1| GENE 250 263829 - 265103 1253 424 aa, chain + ## HITS:1 COG:SP1554 KEGG:ns NR:ns ## COG: SP1554 COG0617 # Protein_GI_number: 15901397 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Streptococcus pneumoniae TIGR4 # 24 418 1 394 394 351 49.0 1e-96 MSASGTENRTTLRIGTDAMKLTTIPNEFKEAAPVIREINAQGFEAYFVGGSVRDALLNKP IHDVDIATSAYPEEIKQIFKRTVDVGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDE VTFVRSLKEDLKRRDFTINALALDSTGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALR MMRGLRFASQLDFKIEEKTLAAIAEFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIE TECYQYCPKLREQGAGLFRLMDLPARQIETEAEAWTLLIQSLNLPEAEIRSFLKAWKLSN QLIQNVSQLVRGLRFRLSNDWQPMMLYELGEESAVLVERLLYYYQQESQVQVTKELVKAL PIHQRHELAITGKDLLAVLEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKKQRSK GEKA >gi|307679014|gb|GL456783.1| GENE 251 265103 - 265477 483 124 aa, chain + ## HITS:1 COG:SPy1339 KEGG:ns NR:ns ## COG: SPy1339 COG5496 # Protein_GI_number: 15675277 # Func_class: R General function prediction only # Function: Predicted thioesterase # Organism: Streptococcus pyogenes M1 GAS # 5 123 3 121 121 70 30.0 1e-12 MPTEMFTKEFLVKESQTAKMLGSGDLEVLGTPALAAMIEQTAKEAVKDQLSVGETTVGTV LELRHLFPSAVGATIVVTMTSIEQTAHKIRYEFVAYEGERQIAKGSHQRAVVEIDSFLKR ITKD >gi|307679014|gb|GL456783.1| GENE 252 265567 - 266022 652 151 aa, chain + ## HITS:1 COG:no KEGG:EF1560 NR:ns ## KEGG: EF1560 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 151 1 151 151 301 100.0 7e-81 MAREMTGLKFYFRNGETWTIDRRFIGDLWIKHITTSFGRIHGSEFVEIHPCEGFKIEIFQ EGDHVQTHDINLGGLELGMFSRALKYEDIERMEILYKNGTPDLVYFPYKDKTDEGLDNIY QSTKVSEKTKNLYIVIDPTQTVDDVYAEELK >gi|307679014|gb|GL456783.1| GENE 253 266510 - 267376 961 288 aa, chain + ## HITS:1 COG:lin0493 KEGG:ns NR:ns ## COG: lin0493 COG0169 # Protein_GI_number: 16799568 # Func_class: E Amino acid transport and metabolism # Function: Shikimate 5-dehydrogenase # Organism: Listeria innocua # 2 282 7 287 291 276 48.0 3e-74 MKEITGATRLAGLFAKPSQHSISPLIHNTAFQNLGVDARYLAFDVGQETLPQAIEAIRTF HMLGANLSMPNKVAAVSYMDELSPTAQLVGAINTIVNKDGKLYGDSTDGTGFMWSLKEKK VDVFQNKMTILGTGGAALSIIAQAALDGVKEIAVYNRKSAGFNDSQKKLANFTERTNCVI HLNDLADTEKLAKDVAESVLLVNATSVGMHPHAHSSPIENYAMIQPKLFVYDAIYNPRET QLLKEARLRGAETSNGLDMLLYQGAVAFEQWTGQKMPVSVVKRKIENR >gi|307679014|gb|GL456783.1| GENE 254 267413 - 268438 1252 341 aa, chain + ## HITS:1 COG:TM0343 KEGG:ns NR:ns ## COG: TM0343 COG2876 # Protein_GI_number: 15643111 # Func_class: E Amino acid transport and metabolism # Function: 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase # Organism: Thermotoga maritima # 1 333 1 333 338 344 51.0 1e-94 MIVIMKENATEKQMKQVIDLVTGAGLTTQTSQDNGKTVIGLIGDTEKLVEAELTALEGVE KSVRISLSYKLTSRLFHPENTVVDVNGVKIGDGSMTMMAGPCSIESLDQIRECARIAKAG GATILRGGAFKPRTSPYAFQGLEEEGLKYIRQAADELDMQVITEVMDEANLELVAKYSDI LQIGARNMQNFKLLQAVGKTGKPIGLKRGIAGTIDEWLNAAEYIAAQGNFNVIFIERGIR TYETATRNTLDLSAVPLIKKLSHFPIIVDPSHGVGIWDLVPPMARAGVASGADGLIVEIH PDPANAWSDGPQSLNEKTYLRMMKEVHIIEKAMKEINALED >gi|307679014|gb|GL456783.1| GENE 255 268461 - 269537 1346 358 aa, chain + ## HITS:1 COG:L0060 KEGG:ns NR:ns ## COG: L0060 COG0337 # Protein_GI_number: 15673738 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate synthetase # Organism: Lactococcus lactis # 1 354 1 356 356 401 56.0 1e-111 MKLTVTLPTHSYDLTIETGALDKIGTWVRSLWQPQRVAIITDETVNKLYGAAVEKELQAA GFETSLIAVAAGEQSKSLETAQLLYDFLAEQQLTRSDGLIALGGGVVGDLAGFVASTYMR GIHFLQVPTTLLAQVDSSIGGKTAVNTKKAKNLVGTFAQPDGVLIDPNTLKTLEPRRVRE GIAEIVKSAAIADVELWHRLSSLENEQDLVAHAEEIITACCKIKRDVVEEDELDLGLRLI LNFGHTIGHALENTAGYGVIAHGEGVSLGMIQITQVAEQQGLSPLGTTQELVTMLEKFHL PVTTDRWSEERLYQAITHDKKTRGGQIKIIVLEKIGQAKIVSLPTEEIRAFLNREGGI >gi|307679014|gb|GL456783.1| GENE 256 269539 - 270705 1464 388 aa, chain + ## HITS:1 COG:SPy0810 KEGG:ns NR:ns ## COG: SPy0810 COG0082 # Protein_GI_number: 15674852 # Func_class: E Amino acid transport and metabolism # Function: Chorismate synthase # Organism: Streptococcus pyogenes M1 GAS # 1 388 1 388 388 497 62.0 1e-140 MRFITAGESHGPELTAIIEGLPAGLPLSSEEINRELARRQGGYGRGGRMKIEKDQVRITS GIRHGKTLGSPVTLIVENKDWKNWTSVMSVEPVPEKQKKIRRVSKPRPGHADLVGGMKYQ HDDLRNVLERSSARETTMRVAIGAVAKKLLAELDIQVAGHVAVLGGIEATIPENLTIREI QERSEQSAVRVLDPSVEEKMKELIDQTKKNGDTIGGVVEVLVGGVPAGLGSYVQWDRKLD AKIAQAVVSINAFKGAEFGIGFEMAQRPGSQVMDEIVWDESTGYTRTSNNLGGFEGGMTN GMPIIVRGVMKPIPTLYKPLQSVNIDTKEPYKASVERSDSTAVPAASVVCEAVVATEVAK AMLEKFDSDSFEQMKEAVKRYRLYTQNF >gi|307679014|gb|GL456783.1| GENE 257 270739 - 271545 678 268 aa, chain + ## HITS:1 COG:lin2038 KEGG:ns NR:ns ## COG: lin2038 COG0287 # Protein_GI_number: 16801104 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydrogenase # Organism: Listeria innocua # 1 266 1 269 367 251 50.0 1e-66 MKKRILIVGLGLIGSSLALCIKKGHPNSEIIGFDNQAESTEFAKKTGLIDEIAESLTSGA RRAEIIFLCSPVKATLVQLEELNQLSLETALITDVGSTKVEINQLATKLNMKNFIGGHPM AGSHKSGVTAADERLFENAYYIFTDDHGEKNKQIQELQTLLKGTHAKFITMPAQEHDEIT GALSHLPHIVAAALVNESQQLNTTYPRAQQLAAGGFRDITRIASSDVTMWTDILLSNRLV LLDLLENWQKEMTTVCQWLTEKKCPSYS >gi|307679014|gb|GL456783.1| GENE 258 271580 - 271834 241 84 aa, chain + ## HITS:1 COG:lin2038 KEGG:ns NR:ns ## COG: lin2038 COG0287 # Protein_GI_number: 16801104 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydrogenase # Organism: Listeria innocua # 1 82 284 365 367 113 57.0 8e-26 MPIHKEGVIPAFYDLFVDVPDQPGIIAEITQILGEADLSLTNIKILETREEIYGILQLSF KNQPDCQAAKQILSKETNYTCYEK >gi|307679014|gb|GL456783.1| GENE 259 271847 - 273127 1410 426 aa, chain + ## HITS:1 COG:SP1371 KEGG:ns NR:ns ## COG: SP1371 COG0128 # Protein_GI_number: 15901225 # Func_class: E Amino acid transport and metabolism # Function: 5-enolpyruvylshikimate-3-phosphate synthase # Organism: Streptococcus pneumoniae TIGR4 # 1 424 1 424 427 526 62.0 1e-149 MQLRTNVKHLQGTLMVPSDKSISHRSIMFGAISSGKTTITNFLRGEDCLSTLAAFRSLGV NIEDDGTTITVEGQGFAGLKKAKNTIDVGNSGTTIRLMLGILAGCPFETRLAGDASISKR PMNRVMLPLNQMGAECQGVQQTEFPPISIRGTQNLQPIDYTMPVASAQVKSAILFAALQA EGTSVVVEKEKTRDHTEEMIRQFGGTLEVDGKKIMLTGPQQLTGQNVVVPGDISSAAFFL VAGLVVPDSEILLKNVGLNQTRTGILDVIKNMGGSVTILNEDEANHSGDLLVKTSQLTAT EIGGAIIPRLIDELPIIALLATQATGTTIIRDAEELKVKETNRIDAVAKELTILGADITP TDDGLIIHGPTSLHGGRVTSYGDHRIGMMLQIAALLVKEGTVELDKAEAVSVSYPAFFDD LERLSC >gi|307679014|gb|GL456783.1| GENE 260 273147 - 273653 582 168 aa, chain + ## HITS:1 COG:SP1370 KEGG:ns NR:ns ## COG: SP1370 COG0703 # Protein_GI_number: 15901224 # Func_class: E Amino acid transport and metabolism # Function: Shikimate kinase # Organism: Streptococcus pneumoniae TIGR4 # 5 162 4 157 158 131 44.0 6e-31 MESIVLIGFMGAGKTTIGQSLANKLKMPHLDLDTALIEKIGRSIPDYFEKYGEAAFREQE TQLLKELSKNTAVLSTGGGIVVGPENRSLLKSFQQVIYLHATPEELLKRITEDTENQRPL AIERSSKEIITLFESRKNFYEECAKMTIDTTNRSPEEIINEILQQLKE >gi|307679014|gb|GL456783.1| GENE 261 273661 - 274509 868 282 aa, chain + ## HITS:1 COG:SP1369 KEGG:ns NR:ns ## COG: SP1369 COG0077 # Protein_GI_number: 15901223 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydratase # Organism: Streptococcus pneumoniae TIGR4 # 1 280 1 275 282 275 51.0 6e-74 MKVGYLGPIGSFTYSATLAAFPDATLIPYASIPACLKAIEQQEVACSIIPIENTIEGTVN ASIDYLYHQAQLPVQAELVLPIQQQLMVAKENQAIWQQSQKILSHPQALAQSQMFLEKNF PEAILEATPSTAYAAKYIAEHPELPFAAIAPKLSAEMYDLTIVEKNIQDLSVNQTRFWVL GSENLAISFPLSEKKITLAITMPSNVPGSLHKALSVFSWRGINLSKIESRPLKTKLGEYF FLMDLVKDQPEKLIEAALTELELIGAEIKILGDYPIYVLSTL >gi|307679014|gb|GL456783.1| GENE 262 274653 - 275825 1119 390 aa, chain + ## HITS:1 COG:lin0463 KEGG:ns NR:ns ## COG: lin0463 COG1316 # Protein_GI_number: 16799539 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 88 388 6 308 309 260 45.0 3e-69 MSRVDRYKHIHEKSRPAEHKKTFNPRKSMGEHREEEPEELAESLQEPVYEDSYTEDSRRS ERRHQTDSGGGNGSDQPPRGKKDKKPKKKRKKSKTKRFFKWLVILLILLFAYSTVMFLKG KSAAEHDDSLPQEKVETFNGVKSSNGAKNILILGSDTRGEDAGRADTIMVLQLNGPSKKP KLISFMRDTFVDIPGVGPNKINAAYAYGGAELVRETLKQNFNLDTKYYAKVDFQSFEKIV DSMFPKGVKIDAEKSLNLDGVDIEKGQQVMDGHVLLQYARFRMDEEGDFGRVRRQQQVMS AVMSQMKNPMTLLRTPESLGKLVGYMSTDVPVSFMLTNGPSLLIKGKAGVESLSVPVPDS WNFGESSYAGSILEVDEQKNADAIEKFLNE >gi|307679014|gb|GL456783.1| GENE 263 275901 - 276749 1070 282 aa, chain + ## HITS:1 COG:lin2658 KEGG:ns NR:ns ## COG: lin2658 COG1307 # Protein_GI_number: 16801719 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 2 280 4 281 283 239 45.0 5e-63 MKIAIVTDSTAYLPERIKDHPNLFVIPIPVILDGKIYNEGIDIEADEYYALLNNSKEFPT TSQPALGEVLELYKSIAEQGYDTIISIHLSSGISGFVHTLHGLTDEIPGVALYPYDSKIT SMPMGHMVEAALDLTEEKASLEEIFAKLDLIRDNTYAYLIVEDLNNLVRGGRLTNGAALI AGLLKIKPILTFEDGKIVLFEKIRSTKKAFARAEKIIGERNAGIEAPVKLYVIHANNRIV AEKEQAKLQKLYPNAEIEIGHFGPVIGTHLGEKAIGLAISAQ >gi|307679014|gb|GL456783.1| GENE 264 276943 - 277137 237 64 aa, chain + ## HITS:1 COG:no KEGG:EF1571 NR:ns ## KEGG: EF1571 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 64 1 64 64 72 100.0 7e-12 MKRNIALLQSEKMKKVQALANYYQESIDLPPGKNREAVIKKINESKKEIKEINDILTDIQ KKKK >gi|307679014|gb|GL456783.1| GENE 265 277149 - 277625 469 158 aa, chain + ## HITS:1 COG:no KEGG:EF1572 NR:ns ## KEGG: EF1572 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 158 1 158 158 284 99.0 9e-76 MIIDGFTLLLFLFVVVMYGYFYFVRKSIVIPAAKHPTTKYLVAFFSLMILANAFSAGDKI EMIRSVLYILIIFSFLYDARGFAEDCIITHPFDNRGTAFKDIEKIVLVQKSNGIRLGYLK KGRRGVVLRFSAPLEEMVLFLSTRMNEEAEIDIIVNED >gi|307679014|gb|GL456783.1| GENE 266 277769 - 278035 290 88 aa, chain + ## HITS:1 COG:no KEGG:EF1573 NR:ns ## KEGG: EF1573 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 88 23 110 110 97 98.0 2e-19 MSEEFEKCVADLKKKYQAIPEEKRQHFAERMQKKNFLRYKKIELIKGELLRLEARRAQLE LCERSSELEEVEKKIILKKKKLLKCFDR >gi|307679014|gb|GL456783.1| GENE 267 278071 - 280125 2234 684 aa, chain + ## HITS:1 COG:L187315 KEGG:ns NR:ns ## COG: L187315 COG0025 # Protein_GI_number: 15672365 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters # Organism: Lactococcus lactis # 1 666 2 662 680 437 39.0 1e-122 MEFTFLIIVFALSITFSNIFNRIVPVIPLPIVQIIVGVLIGLTKMGQEIEFEPEVFLVMI IAPLLFREGELINLKAMMKNFGMILFLAFFGVLITLVGVGWTLHMILPTLPLAACFAFGA ALGPTDAVAVGSLSGRIDIPERSMNILSGEGLINDASGVTAFQFALAALLTGSFSPVEAA GTLVISSIGGAVVGIVLVLLKQQIVHLLETAVAKDVTGYLLIELLLPFIAYLISELIGVS GIIAAVIAGIMQASSLKKVSLFEAELSNVGESIWSMIEFTLNALVFLFLGIELSQVFSPI WIDQQYSNWFLLMVVLIISGVVFLIRFLAIFSVYTLQHGFKKVKTAMNEMLILTFGGVKG TVSLATIFILPTAINGEHFKERPLLLFITACVILVTLIGGILVLPFLTDSETEVENEESV EIDLLRDVIDVLKQQNEENPRGEMNAVIENYQDRLKELYTEQLSAERKQEVQELRTLIVS IERDGLEESLKQGEISVRSYRMYQRLITRMQRSIAKQLLSIVGFWLLFARQIISILLHPK LFFNRGEASEEEKELRNEELENIRQVFLRNSQVILKSLDNLRGVYDDDLIDFFIDGRLDL AHKFEKGEFIDSYIVHTETDYVKDLLLGFQEERRMIDHYEQSERISIIEANELRKNVNLL ESYSISGEVNNVPLKRFVKNFNKE >gi|307679014|gb|GL456783.1| GENE 268 280236 - 282125 2366 629 aa, chain + ## HITS:1 COG:lin1989 KEGG:ns NR:ns ## COG: lin1989 COG0488 # Protein_GI_number: 16801055 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Listeria innocua # 1 629 1 630 630 631 54.0 1e-180 MKELKVTDLTKTYGEKTLFDHLSFLIHEKDRIGLIGINGTGKTSLLNIIAGVDSGDGDLA AIQQPSDYQIGYLSQNQTFDENITIAEAVFQGDSPIIKTVKNYELALAALSENGLDEGVQ RRYTQAEEAMNKQDAWTADTNAKIILQKLGIPTLEKKIGELSGGQLKRVSLAQVLIEAPD LLLLDEPTNHLDYETIEWLENFLNNYRGAVLMVTHDRYFLDRVTNRIFELSFGKLYEYKG NYETYVMEKAERERVAVEQEEKRKRLFKQELAWMRAGVQARGTKQQARIDRFQDLKENLH QVQTNGTLEADFATQRLGKKVLEIKEGNYAIDHKQLLKDFNLLIQANDRIGITGKNGAGK STLLNILAGRIPLESDLYSIGETVRIGYYTQQNEEMDPNQRMIAYLQEAAEEVKRSDGSS VGVAEMLERFLFPRFMHGTLIGKLSGGEKRRLYLLKLLISQPNVLLLDEPTNDLDIDTLT ILEDYIQTFKGAVIAVSHDRYFLDKTMDKLLVFQGNAQILSFYGTMSEYLANQKEQEKVK EKPLNKPVKEASTEKKEKTKLTYMEQKEWATIEEDITQLETKLETLTEEMNHQGDDFVRL QELQEAVTATEQLLEEKMNRWEYLSEYAD >gi|307679014|gb|GL456783.1| GENE 269 282143 - 283090 1184 315 aa, chain + ## HITS:1 COG:lin1988 KEGG:ns NR:ns ## COG: lin1988 COG0207 # Protein_GI_number: 16801054 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate synthase # Organism: Listeria innocua # 5 315 4 314 314 478 71.0 1e-135 MEEAYLALGKKILEEGHFKEDRTGTGTYSLFGYQMRFDLAKGFPLLTTKRVPFGLIKSEL LWFLKGDTNIRYLLERNNHIWDEWAFERYVKSADYQGPDMTDFGHRVLQDPAFAEQYKEE HQKFCDAILNDAEFAEKYGELGNIYGAQWRHWETKDGSFIDQLANVIEMIKTNPDSRRLI VSAWNPEDVPSMALPPCHTMFQFYVNEGKLSCQLYQRSADVFLGVPFNIASYALLTHLIA HETGLEVGEFVHTLGDAHLYQNHVEQMQEQLSREVRSFPTLVLNPDKASVFDFDMEDIKV EGYDPHPTIKAPIAV >gi|307679014|gb|GL456783.1| GENE 270 283108 - 283602 573 164 aa, chain + ## HITS:1 COG:BH3450 KEGG:ns NR:ns ## COG: BH3450 COG0262 # Protein_GI_number: 15616012 # Func_class: H Coenzyme transport and metabolism # Function: Dihydrofolate reductase # Organism: Bacillus halodurans # 1 164 1 162 163 146 44.0 2e-35 MLAAIWTQDEQGVIGKEGKLPWHLPNDLKFFKEKTIHNTLVLGRATFEGMGCRPLPNRTT IVLTSNPDYQAEGVLVMHSVEEILAYADNYEGVTVIGGGSVVFKELIPACDVLYRTMIHE TFEGDTFFPEIDWSVWEKVATVPGVVDEKNLYAHDYETYHRNDK >gi|307679014|gb|GL456783.1| GENE 271 283626 - 284795 1165 389 aa, chain + ## HITS:1 COG:lin0933 KEGG:ns NR:ns ## COG: lin0933 COG1600 # Protein_GI_number: 16800004 # Func_class: C Energy production and conversion # Function: Uncharacterized Fe-S protein # Organism: Listeria innocua # 4 371 13 374 380 399 53.0 1e-111 MPTLKEKIIQESQRLGIDKIGFTHAEPFIELEDSLHEQRERGYNSGFEHQNVEERIYPEK TFEHPKSIISIALAYPTKAQGKMPRDEKRGQFARASWGIDYHHILQDRLQKLIAFIEEQA ATEAEKEHWRFRPQVDTGEYVDTAVAQRAGLGFIGKNGLLITEEFGSFVYLGEVTTNIQF EPDEPVPNGCGDCTRCITGCPTGALLGDGRMNAQKCLSYQTQTKGMMPEEYRKKMRNVIY GCDICQLVCPYNKGKDFHFHEEMEPKIEEVYPKLAPLLTISNKEFKQQFGHLAGSWRGKK PLQRNALIALANLGGREAIPQIILCLNDQRPVIRGTAAWSLGQLAKREPEQSLEALNYLL SVETEEEVIEEAQKAIYLLTSKKGSRSTE >gi|307679014|gb|GL456783.1| GENE 272 284809 - 285429 693 206 aa, chain - ## HITS:1 COG:lin1340 KEGG:ns NR:ns ## COG: lin1340 COG1974 # Protein_GI_number: 16800408 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Listeria innocua # 4 204 2 202 204 246 62.0 3e-65 MAKRTETRQLEVLKYIYEQVELKGYPPTVREIGKAVDLSSTSTVHGHLARLEKKGLILRD PTKPRAIELTPEGLEKIGIQPTTIPMLGVVTAGEPILAVEEASDFFPLPPDLRTEENALF MLTIRGESMINAGILDGDQVIVRKQSNANNGDIVIAMTDEDEATCKRFFREVDHIRLQPE NDALAPILLDNVTILGKVVGLYRNHI >gi|307679014|gb|GL456783.1| GENE 273 285580 - 285822 394 80 aa, chain + ## HITS:1 COG:SP1473 KEGG:ns NR:ns ## COG: SP1473 COG4224 # Protein_GI_number: 15901323 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 2 79 1 78 85 76 64.0 1e-14 MLSKEKIARINELANKAKVEELSAKEKVEQQELRKEYLEAFRGGMRHHIEGMKVVDQEGT DVTPEKLKKIQREKGLHNRK >gi|307679014|gb|GL456783.1| GENE 274 285894 - 287888 2529 664 aa, chain + ## HITS:1 COG:SPy1676 KEGG:ns NR:ns ## COG: SPy1676 COG0021 # Protein_GI_number: 15675539 # Func_class: G Carbohydrate transport and metabolism # Function: Transketolase # Organism: Streptococcus pyogenes M1 GAS # 2 664 53 711 711 928 70.0 0 MFDKTDQLGVNTIRTLSIEAVQKANSGHPGLPMGAAPMAYALWTKHLKVNPTTSRNWVDR DRFVLSAGHGSAMLYSLLHLSGYNVTIDDLKNFRQWDSKTPGHPEVHHTDGVEATTGPLG QGIAMAVGMAMAEAHLAATYNRDSFPIMDHYTYAICGDGDLMEGVSQEASSMAGHMKLGK LIVLYDSNDISLDGPTSKAFTENVGARYEAYGWQHILVKDGNDLDEIEAAIEAAKAETDK PTLIEVKTVIGYGAPKEGTSSVHGAPIGEEGITAAKAVYGWEYPDFTVPEEVAARFKETM IDEGQKAEEAWNEMFKNYEHAHPELAKQFKEAFANQLPEGWEQELPKYELGTSAASRVTS KETIQAISKVVPSFWGGSADLSASNNTMVAAEKDFEPGQYEGRNIWFGVREFAMAAAMNG IQLHGGSHVYGGTFFVFTDYLRPAIRLAALQKVPVTYVLTHDSVAVGEDGPTHEPIEQLA SVRCIPNVHVIRPADGNETVAAWKIAMTSTETPTILVLSRQNLPVLEGTLEHASDSVQKG AYVLSPQKGEQPSGILIATGSEVNLAVEAQAKLAEEGIDVSVVSMPSFDLFEKQSAEYKE SVLPKAVTKRVAIEAAASFGWERYVGTEGKTITIDHFGASAPGGLVLEKFGFTPENVVNT YKSL >gi|307679014|gb|GL456783.1| GENE 275 287940 - 289130 1225 396 aa, chain - ## HITS:1 COG:CAC0560 KEGG:ns NR:ns ## COG: CAC0560 COG0477 # Protein_GI_number: 15893850 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Clostridium acetobutylicum # 3 394 43 430 441 285 42.0 1e-76 MKKQQSGLTNQVTFLLALTCGVVVANMYYIQPIGTQIAQAFQVSIGSIGFVTMLTQLGYA LGLLFLVPLGDVVDRRKLIIRVAALSSLSLSAAFFAPSFLLFALSSFFIGLLSIVAQIII PYAAVMAGPANRGKVTGRMLGGLLTGILLSRTISGFIASAASWRTVYLIAVIFVLALVVL LQLKLPKTVIHTQTSNRLTYLGSLKSLPKLIKSQPLLREATVNGFFMFATFSIFWSTLIF FVSSPAYYWGPKEVGILAIFGLSGAFVAPIIGRLSDYYPERKIVLIGLLMQFGSFILLFL GGTHVVLLILAIIVLDIGTQFGQVANQTRVQNLGEEASNRNNTVFMFFYFIGGSLGSLIG TLMWQNYGWSGVTLTGIGFQLFALFFHFMLFAPKKK >gi|307679014|gb|GL456783.1| GENE 276 289485 - 290345 1094 286 aa, chain + ## HITS:1 COG:lin2838_1 KEGG:ns NR:ns ## COG: lin2838_1 COG1705 # Protein_GI_number: 16801898 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Listeria innocua # 52 205 154 308 340 147 60.0 2e-35 MSEQLTRSSKHIQKALKKQKAYKRATAVAGTSMILAPVVGAAVPAQAESSQQAFINEIGN SAAAVANSNDMYASVMIAQALLESSYGSSGLASAPNYNLFGVKGSYNGQSVYMPTKEYLD GQWVTVTAAFRSYNSYAESFQDHANVIRSTAFGDTYHYSGVWKSNTSSYRDATAALAGSY ATDPGYAEKLNWLIEAYNLTQYDWGAPVAQTTSYSDTTGTVDTTIDTAASATATAETVAS QSYTVANGDTLWDIAARFGTTVDNLMSLNGLTLDSVLSVGQTIQIG >gi|307679014|gb|GL456783.1| GENE 277 290574 - 291506 1048 310 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP6-BS73] # 8 308 6 306 308 408 67 1e-112 MTKGYVKSVTELIGQSPVVKLKRMVPEGAADVFVKLEFFNPGGSVKDRIALSMIQQAEAD GRLKPGQTIIEPTSGNTGIGLAMVGAALGYPVKIVMPDTMSIERRKLMQAYGADLLLTPG AEGMKGAIAKATALAEEHGYFMPLQFNNPANPMVHEQKTGKEIVDVFGKRGLDAFVSGVG TGGTVTGVGHELKRIFPDIEIVAVEPTESPVLEGGEPGPHKIQGIGAGFVPEVLDTTVYQ KVAAVSSEDALETARLMGPKEGILVGISAGAAIKAAIDLAVELGAGKRVLALVPDNGERY LSTALYEFPE >gi|307679014|gb|GL456783.1| GENE 278 291645 - 292088 655 147 aa, chain + ## HITS:1 COG:lin1791 KEGG:ns NR:ns ## COG: lin1791 COG0735 # Protein_GI_number: 16800859 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Listeria innocua # 1 146 3 148 148 207 63.0 4e-54 MDNVLVKNALAELKEANIRITPQRYAILEYLIENHTHPTADEIYRALEDHFPNMSVATVY NNLRLFTEIGFVQEMSYGDASSRFDFSSKKHYHVICQKCGKIVDFHYPGLEDVEMAASKL TGFEINEHRLELYGLCPDCQQAQQENV >gi|307679014|gb|GL456783.1| GENE 279 292386 - 293726 1840 446 aa, chain + ## HITS:1 COG:SPy1150 KEGG:ns NR:ns ## COG: SPy1150 COG0446 # Protein_GI_number: 15675127 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Streptococcus pyogenes M1 GAS # 2 442 3 454 456 365 43.0 1e-100 MKVVVVGCTHAGTSAVKSILANHPEAEVTVYERNDNISFLSCGIALYVGGVVKNAADLFY SNPEELASLGATVKMEHNVEEINVDDKTVIAKNLQTGATETVSYDKLVMTTGSWPIIPPI PGIDAENILLCKNYSQANVIIEKAKDAKRVVVVGGGYIGIELVEAFVESGKQVTLVDGLD RILNKYLDKPFTDVLEKELVDRGVNLALGENVQQFVADEQGKVAKVITPSQEFEADMVIM CVGFRPNTELLKDKVDMLPNGAIEVNEYMQTSNPDIFAAGDSAVVHYNPSQTKNYIPLAT NAVRQGMLVGRNLTEQKLAYRGTQGTSGLYLFGWKIGSTGVTKESAKLNGLDVEATVFED NYRPEFMPTTEKVLMELVYEKGTQRIVGGQLMSKYDITQSANTLSLAVQNKMTVEDLAIS DFFFQPHFDRPWNYLNLLAQAALENM >gi|307679014|gb|GL456783.1| GENE 280 293774 - 294382 728 202 aa, chain - ## HITS:1 COG:L167097 KEGG:ns NR:ns ## COG: L167097 COG1051 # Protein_GI_number: 15672146 # Func_class: F Nucleotide transport and metabolism # Function: ADP-ribose pyrophosphatase # Organism: Lactococcus lactis # 1 192 1 188 200 140 44.0 2e-33 MDYLNTYKRLLALADAGLFYGKDAFDQERYQELRELTLQLISATGHEATVLPDLEKILTK EEGYPTPKVDVRGLIKKENRFLLVEDLRTKEWSLPGGYAEIGCSPKENIEKEVLEETGLV VTAKELLAVYDTDKRKDIPQLFQYYKMIFSCDILENHPFEKNIETSNCAYFSLDNLPSLS IKRTTKEQLMALMNQTTGALSD >gi|307679014|gb|GL456783.1| GENE 281 294589 - 295059 286 156 aa, chain + ## HITS:1 COG:SP0640 KEGG:ns NR:ns ## COG: SP0640 COG0456 # Protein_GI_number: 15900546 # Func_class: R General function prediction only # Function: Acetyltransferases # Organism: Streptococcus pneumoniae TIGR4 # 80 155 5 80 81 77 48.0 7e-15 MKEFTIMREKNADKKTQIAQEVLFNLPEWFGLEKETRKYIDIASTLPMWVAKDVENKILG FITLSETSKDTVEIHCMAVKKRYHRKGIGKLLIESVETYSKNNYFFIQVKTVDEGNYSVY DHTIRFYESLGFKRLEVFPTLWDAWNPCLILIKQLI >gi|307679014|gb|GL456783.1| GENE 282 295079 - 295606 579 175 aa, chain + ## HITS:1 COG:BS_paiA KEGG:ns NR:ns ## COG: BS_paiA COG0454 # Protein_GI_number: 16080268 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 1 171 1 171 172 154 45.0 9e-38 MSVFIRECTVADVPELEAICQETFADTYGDGENEEDLQAHYERKFSPAVLESEILHKDSQ YFFAFYNNELAGYVKLNHGDAQITYQHPQALQVERIYIRKSFKRLGLGKHLITKAIELAE EAEKETVWLGVWEHNHPAQKFYQSLGFVKTDEHDFYMGNERHTDYTMTKQLKEST >gi|307679014|gb|GL456783.1| GENE 283 295661 - 296479 890 272 aa, chain - ## HITS:1 COG:lin0157 KEGG:ns NR:ns ## COG: lin0157 COG2207 # Protein_GI_number: 16799234 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Listeria innocua # 5 271 5 271 277 221 43.0 2e-57 MNYTNSRTFNPEILYAFDPWNEETHPYNCHHHEFLEISILLEGESEYIVQGQQYHATAGT VFLFNPRTEHGEQQKAGTYSHQLHIGISNLYLEGLARNVFPNKSALLDLSHLHGAFLEKA WQIVHELNHQEVESALQIKALVIELLVYILRSLAVDQENKIETRLSKTEKRKRNLVNHTI YYLETHHDEEITLEQLAEMLYVTPTYLSKTFKAATGVGPINYLIQIRLNHAKELLKNDSL SVKEVAKTVGYEDAYHFSKLFKKYYGKSPSQF >gi|307679014|gb|GL456783.1| GENE 284 296616 - 298364 225 582 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 295 557 247 507 563 91 27 6e-17 MNSFEWIWQYAKKNKNKLLLAVIFVVINAILIVIIPLLSGRIVDQVINQGKTEELVPILG IMIGVTVIRTVVRYSYQVLFESVGQSALFDLRKDMYVKLQELDFDFFNHTRVGDIMARMT GDTDAIRHFVSWVTYNLLECILWFIAAVIVMGTINWQLMLALILITPLIFLLTQKMSKES HPVFFEIRESFSRLNSMVEENIGGNRVVKAFSQEPYEIEKFNKHNEDYKKWNMASADVSK KYLPWLDGFAGSLNVIALVLGGLFVIQGRMTIGDLVAFNGFLWMLNMPMRMSGWLINDVQ RFTASSIKIRQLLATKPKIPIAREKEAEPIQGYVTFDHVSFHFSDDPETPILSDVSFSAK PGETIGILGETGSGKTTLVNLIARFYDPTKGTVYIDGKDAKSYSVRKLRENISMVMQDVF LFSNTIEDNIAFGNTLANLEQVQMMAEIADAHSFISRMPEGYATIVGERGVGLSGGQKQR ISLARALTKDPAILILDDTTSAVDMETESKIQKELGRLTEKKTTFIIAHRISSVREANLI LMMEKGRVVESGTHSELVEQKGKYFDVYQKQLGLTKEGESRG >gi|307679014|gb|GL456783.1| GENE 285 298357 - 300135 236 592 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 336 574 6 251 329 95 28 3e-18 MARNTFDVDETLEKEFNWSHYKRLGAYIKPYKKAVFKTLFVIILANLASMLGPYFTKIAI DQVIPQKNLSLLLILGAIFLFSLVIIGWCMRYRIYAITEIGQDILKDMRFSIFEHLQKLP FSYFDSRPHGKILIRVVNYINTLSDLLSNGLINLISDLFNVIITLIFMLFIDVKLTLYSL LLLPVLFVMVLFIQGKQRKAYQELSNKQSNLNAYIHESISGIKITQSFAREDENFQIFNE VSEEYRQSFMKAVRVQYLLWPAVQNISVITTCFIYFVGIRQLGVSVTTGTLIAFIGYINN FWNPVINIGNFYNSLITATAYLERIFETMDVVPEIQDAPHAIALPPIKGTVDFQHVYFRY EEGKNILNDVSFHIEPGQTIALVGPTGAGKTTIINLLSRFYDVNEGAVKIDGYDVRDVTL RSLRKQMGVMLQDTFIFSGTIIENIRYGNLAATEEEVIQAAKIVRAHDFIKDLKDGYETV VEERGSTLSAGQRQLISFARALLADPKILILDEATSSIDTKTEELLQEGLQQLLKGRTSF IIAHRLSTIKNSDKIFYIDGGRIVEEGSHDQLMAKHALYHHLYQSQYDLLKS >gi|307679014|gb|GL456783.1| GENE 286 300224 - 300649 468 141 aa, chain + ## HITS:1 COG:SP0740 KEGG:ns NR:ns ## COG: SP0740 COG0494 # Protein_GI_number: 15900635 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Streptococcus pneumoniae TIGR4 # 1 138 1 142 151 89 38.0 2e-18 MNRNFEVELTTLCMIRNQKNEILVQERQKKDWPGWTFPGGHVEKNEGMETAMVRELLEET GLVLKPQLVGVAEWLNDCSGARELATLFIAETADELPEETEQPLFWVTEKELREGPLAGS LAELFPVFFGEKQFYFKNNTA >gi|307679014|gb|GL456783.1| GENE 287 300789 - 301799 1309 336 aa, chain + ## HITS:1 COG:no KEGG:EF1596 NR:ns ## KEGG: EF1596 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 336 1 336 336 523 98.0 1e-147 MLKRKVGIITGVFCSALLLTGCGKSAKDEFIQGIGNQNAQESGVWDFSMSISDMKFSQED SAQTNPMIGMLITQIKDASLSGKIQVDAKKEKAFNLEMKLKAMGMDVPISLVGSLDNEGK EPKLYLATDMMEYIVAVADSMTDGAIDSSQLDTEKLKGKYIDLLAMNEESTKEWQDTIKE YQESEKERKQSAKEYKEFLEGLDKDTFEKKGDTITHTFTKKELQKLIKITTETSEKGKEQ DPFEKIKDVSAKVSVNTKENKTNMLINVKPQQDKNVDMGLESLSSKISITQKAKKATISM PKKENILSEQEVEKIFSDSTSMTGLSTEDTTVAINQ >gi|307679014|gb|GL456783.1| GENE 288 302102 - 303538 1515 478 aa, chain + ## HITS:1 COG:BS_katA KEGG:ns NR:ns ## COG: BS_katA COG0753 # Protein_GI_number: 16077947 # Func_class: P Inorganic ion transport and metabolism # Function: Catalase # Organism: Bacillus subtilis # 1 474 1 475 483 660 67.0 0 MKNQHLTTSQGSPVGDNQNSLTAGEFGPVLIQDVHLLEKLAHFNRERVPERVVHAKGAGA HGIFKVSQSMAQYTKADFLSEVGKETPLFARFSTVAGELGSSDTLRDPRGFALKFYTDEG NYDLVGNNTPIFFIRDAIKFPDFIHSQKRNPRTHLKSPEAVWDFWSHSPESLHQVTILMS DRGIPLSFRHMHGFGSHTFKWVNAAGEVFFVKYHFKTNQGIKNLESQLAEEIAGKNPDFH IEDLHNAIENQEFPSWTLSVQIIPYADALTMKETLFDVTKTVSQKEYPLIEVGTMTLNRN PENYFAEVEQVTFSPGNFVPGIEASPDKLLQGRLFAYGDAHRHRVGANSHQLPINQAKAP VNNYQKDGNMRFNNGNSEINYEPNSYTETPKEDPKAKISSFEVEGNVGNYSYNQDHFTQA NALYNLLPSEEKENLINNIAASLGQVKNQEIIARQIDLFTRVNPEYGARVAQAINQQA >gi|307679014|gb|GL456783.1| GENE 289 303761 - 304522 500 253 aa, chain + ## HITS:1 COG:lin2212 KEGG:ns NR:ns ## COG: lin2212 COG1349 # Protein_GI_number: 16801277 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Listeria innocua # 1 253 1 251 253 139 34.0 6e-33 MIQKKRLELILEELKTRGTLSLKEIINLTGSSRDTARRDIIKLAQNNAIDRTYGGISLPN TFSRLDEYLERTEDLSAEKDILAKTASNLVKDNSHIFLDISTTVSCIPRHIRPYENVIAT TNSLDITDQLLRNTKCKTKILGGSVDPIKRNVVGTKPMLELDSFIFDVAFMSAAGITTSG IYYAYDEDIDFKKKIRKQSKLVVLLIDNTKIGLSHNYKGLDFEDIDFLVIESRLPDDLER TISDSNVSIINSK >gi|307679014|gb|GL456783.1| GENE 290 304531 - 305160 582 209 aa, chain + ## HITS:1 COG:lin2878 KEGG:ns NR:ns ## COG: lin2878 COG0546 # Protein_GI_number: 16801938 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Listeria innocua # 1 208 1 201 203 137 40.0 2e-32 MIKTVLFDVDGTILDTEFVMIKSLQKTLKEEKNLDVPEENLEYILGIPGKKAIERYSSSG EEVDKLHACWSENVKQYSHLATLFPQVEEALTKLKENEIQIGIVTSKTNEEMENEFEHFG LSKLFDISVTASDTTKHKPNPEPILYALNKLGSLPEETIYIGDSIYDMHSSQSAGAKFAL AKWGAKENPLFSSADIRLETPLEILQHLK >gi|307679014|gb|GL456783.1| GENE 291 305379 - 305501 90 40 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|312900796|ref|ZP_07760093.1| ## NR: gi|312900796|ref|ZP_07760093.1| integrase core domain protein [Enterococcus faecalis TX0470] integrase core domain protein [Enterococcus faecalis TX0470] # 1 38 1 38 330 74 100.0 3e-12 MSYNHLSAEERGQIEAYLKEGVSQAEIARRLDRHRSTIYL >gi|307679014|gb|GL456783.1| GENE 292 305551 - 306375 318 274 aa, chain + ## HITS:1 COG:BH2524 KEGG:ns NR:ns ## COG: BH2524 COG2826 # Protein_GI_number: 15615087 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS30 family # Organism: Bacillus halodurans # 15 272 62 312 314 173 42.0 3e-43 MPYQATSAGNLARIRKKNCGTTTKATVHNTKTIMKYLDMKYSPEQIANAVRSVKVCTSTI YNWIYKKIVPFDIKKLRGRGKRYKIKNTGKRLKRPDRAFFEGRTLENRPEEVQLRTEFGH WEADTVVSKQGVAACLATFIERKTRHYVAIKIPNKTGRSMMTAIKRLVEMYPHGVKSITC DRGSEFVNQFEIGLIEDTFDCKIYYANPCAPHERGSNENHNGLLREYFPKPSNFKNISQN KINQAVQSMNLRPRKIFKWKSPQHKFNLEYSKAF >gi|307679014|gb|GL456783.1| GENE 293 306670 - 308103 1250 477 aa, chain - ## HITS:1 COG:lin0597 KEGG:ns NR:ns ## COG: lin0597 COG0415 # Protein_GI_number: 16799672 # Func_class: L Replication, recombination and repair # Function: Deoxyribodipyrimidine photolyase # Organism: Listeria innocua # 1 466 1 461 467 530 56.0 1e-150 MKRVMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQESANHNAFFASLASFK ERIDQEAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFEENNIQ SFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSACLFPEE EAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLSTFLRTG ELSIRTIWQELASMPSSLSKETFKKELAWRDFYNMIYSTFPQQKEEAIQEKFRYIQWTND PEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKM LIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKY IHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKEIHQEMNNPTFQ >gi|307679014|gb|GL456783.1| GENE 294 308237 - 309118 866 293 aa, chain - ## HITS:1 COG:no KEGG:EF1599 NR:ns ## KEGG: EF1599 # Name: not_defined # Def: transcriptional regulator Cro/CI family protein # Organism: E.faecalis # Pathway: not_defined # 13 293 1 281 281 493 99.0 1e-138 MNLHNNTSGGLFVKVAGDKIKQARKLKKITQSELANGICTQATISNIENRNLCDSLDIFS SICLRLDLEVEECMMISEEKKIENLLNKVEDLSLRLFHLEAYNLLQEVPEGLILSNNELT TKLLYYKGITCLLGKKDKAEALFYLYRGAEIDRKVNIYNILSLNALGTLYELEKDMRKAQ VYYEKSLQELEQFKLECSLERCRIYYNSAKFYSEMKDYQKSVTLSEKGIQICRDKHSIYL LDYLLYEKAFNKQMLGEDTADDYRQAYYFTQFFGNTEVLQYIEKDMKAFNISY >gi|307679014|gb|GL456783.1| GENE 295 309164 - 309226 67 20 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFDLLALLTGTSTYGNVPHV >gi|307679014|gb|GL456783.1| GENE 296 309391 - 311319 2263 642 aa, chain - ## HITS:1 COG:SPy1815_2 KEGG:ns NR:ns ## COG: SPy1815_2 COG1263 # Protein_GI_number: 15675645 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Streptococcus pyogenes M1 GAS # 103 456 13 360 385 239 38.0 1e-62 MAENYQQAAKDIIQLIGMDNIISVTHCQTRLRFILKDHEQVDGKQLEKIDLVKGVFYNGG QYQVILGTGIVTKVYDEIEKLGINVVSKAEQTAILKNNETGMRKTMRILSEIFIPIVPVI AATGLFLGLKGVIFNDTFLQLFGASVANIPESFQQIVSVITDTVFAFLPALIVWSTFKAF NATPVIGIVIGLMMVSPILPNAYAVATPDSGVKAIMAFGFIPVVGAQGSVLSAIAAGIIG AKIELFFRKKMPNILDQIFTPFMTMLITFLIMILGIGPILHTVELGMVDVVQWLIGLPLG LGGFVIGASYPLMVLIGIHHTLTMVETSLLANTGFNALITICAMYGFANVGSCLAFAKKA QDSKVKSTAIGSMLSQLFGVSEPVLFGLLIRWNLKPLLCVLFTSGLGGAILAIFHIQSNS YGLAVIPSFLMYIYSAHQLVIYLLVALLSVGVCYALTSLFAIPQEVLISDKVIEEEEREV FEMQHNTLDEQLFSPVNGYAMNLTAVNDPVFSSEMMGKGLAIMPTANKVYAPADGLLNLV AETGHAYGIQTDAGAEVLIHIGIDTVTLGQEVFQTQVTQGHRVKKGDLLGTFDRKAIKEA GLDSTVMVIITNTSSYLSVEPMMSDHNEITPEQIILNLNTPN >gi|307679014|gb|GL456783.1| GENE 297 311336 - 313009 1721 557 aa, chain - ## HITS:1 COG:BH3868 KEGG:ns NR:ns ## COG: BH3868 COG0366 # Protein_GI_number: 15616430 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Bacillus halodurans # 1 510 1 507 553 432 43.0 1e-120 MNRNWWQKEVAYQIYPRSFSDSNNDGIGDLQGIIQKMDYLENLGITLIWLSPMYPSPMAD NGYDISDYYGISSDFGTMADFDELIEEAKKRNIKVILDLVVNHTSDEHAWFQDVLKNPQS RFRDFYIIKEGREAPTNWRSNFGGSVWEKLPGEDAYYFHAFHKKQPDLNWENPELRKEIY QMIRFWLNKGIAGFRVDAINFIKKDLTWTNLPADGADQLAKVTKASRNMPGMSDFLNELK EKAFAGFDIVTVAEAAGVNYPNLSEFIGETGYFDMIFDFKWADLDVKSGSEWFYRIDWSW NDLRTLIFKQQEAMQEAGWSANFIENHDQPRATTKYLKEQAQQPNAVKTFGAMYFFLRGT PFIYQGQELGMTNFERGSIDEFDDISSIDQYYRAIKEGFTPKEALSLVNLRSRDNARTPF PWNDSMYGGFSSVKPWLGMVDNYKEINAEAEIKNSQSIFHFYKRMIAFRQKSPYTDILLY GTFEGLSNLPDNVIAYKRKLNEKTIYAFFNFGEAVPIPHYLVNGTVIFDTQSEEREQLVQ QGTLLKSYQGLLITINE >gi|307679014|gb|GL456783.1| GENE 298 313240 - 314712 996 490 aa, chain + ## HITS:1 COG:SP1724 KEGG:ns NR:ns ## COG: SP1724 COG1621 # Protein_GI_number: 15901557 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-fructosidases (levanase/invertase) # Organism: Streptococcus pneumoniae TIGR4 # 7 486 2 478 484 454 46.0 1e-127 MSSIMNQWTDELRYAPYSSWTSAHLENLTSIIAQSSWRFKYHIQPQTGLLNDPNGFSYFN NQWHLFYQAFPFGSVHGLKSWAHLTSSDLIHWDYEGIALYPDSEYDSHGVYSGSALPIDN QLCLFYTGNVRDQTWQRFAYQNIAWLNSLGAITKESTPFLPIDPNYSSHFRDPMVFPYQE GLVLLIGASDLNGQGKIVVYFSKDRNVHNFHQLGELTFTDQELGYMVECPNLVFIDGQPV LLFCPQGLSPSVKSYQNIYPNMYTLAETFDLENLSLVQAGPFENLDEGFDVYATQAFNAP DGRALAVSWIGLPEITYPSDVEGWANGLSLVKELTIHNGKLFQYPVSETEMLRQSATTLS NGCHFLSTASFELEVDIPKNEIAFIRLLANETGSKGLLITIDTIHGKITLDRTFAGQPFA EKYGTIRETKIRKNKSVQLTIFVDCSVAEIYVNKGEKTMTGRFFPDKAQQYLHLSKTAKA CFYELENTNN >gi|307679014|gb|GL456783.1| GENE 299 314731 - 315711 907 326 aa, chain + ## HITS:1 COG:SP1725 KEGG:ns NR:ns ## COG: SP1725 COG1609 # Protein_GI_number: 15901558 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 1 320 1 315 321 335 54.0 5e-92 MVVKLTDVAKLAGVSPTTVSRVINNYGYLSQKTIDKVHQAMEELNYQPNGLARSLQGKST QLIGLVFPSVSHPFFGELIETLERKLFVQGYKVILCDSEKDPEKERAYLRMLAANKVDGV ITGSHNLAINEYENVSLPIVSFDRFLAPGIPIVSSQNFQGGQKATEALFASGAQKIAIIT GANNTGAPSDYRLAGYKQTMEKYGAEKTILQIDNGTSTTLKNLEIERLLQNKTVDGIFCT DDLTAITVMNIAQKLKISIPEELKVIGYDGTKLIKRIAPQLSTIVQPIDEMCDVMIDLLL RRMKDPDVALEENYPIPIQLSLSESC >gi|307679014|gb|GL456783.1| GENE 300 315771 - 315932 178 53 aa, chain - ## HITS:1 COG:no KEGG:EF1605 NR:ns ## KEGG: EF1605 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 53 1 53 53 75 100.0 5e-13 MNNYDLWKWAAGKRTEKNKNETYSAKNWWYVLLMLGVFVGIMLLYYLISVLWN >gi|307679014|gb|GL456783.1| GENE 301 316042 - 317451 1585 469 aa, chain - ## HITS:1 COG:CAP0010 KEGG:ns NR:ns ## COG: CAP0010 COG2723 # Protein_GI_number: 15004715 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Clostridium acetobutylicum # 2 465 6 466 469 417 45.0 1e-116 MVKQFKNDFLWGASSSAFQIEGAWNEDGKGLTVADYNSFKKSAVQADTKVASDFYHRFKE DIALMKELGLKTYRFSLSWARIIPTGDGEINQAGIDFYNAVIDTLLENDILPFVTLYHFD LPFALVEKYNGWADRRCVSAFQRYAQVCYQAFGDRVKNWQVTNEQNLMIRVDERMNMYDV APENAEKIRAQMDYHMFVAHALATNDCHQLVAGGKVGPSVSSTMTYPSSNKPEDVWAARM NDNFKTNYALEMYCFGEYPGYYQEYLTKCGIYPETQPEDQAILKAAKPDFIALNYYRTLV ASYLPTDEQHPLGTKEKDIDFDLYGYFKIEKNQHLKTSKYGAQIDPTGLRLVLNDYYRQY RLPLIITENGLGTPDHLTEDGKIHDDYRIAYLHDHIAACHAAISDGVELFGYCPWSVMDI LSSHQGFKKRYGFIYVNREDHELKDLRRIKKDSFYWYQSVIKNNGLSEE >gi|307679014|gb|GL456783.1| GENE 302 317451 - 319331 1857 626 aa, chain - ## HITS:1 COG:BH0296_2 KEGG:ns NR:ns ## COG: BH0296_2 COG1263 # Protein_GI_number: 15612859 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Bacillus halodurans # 98 472 2 367 368 300 46.0 4e-81 MDYQAIAKEILKDVGGKDNIVDVTHCYTRLRFVLKDTKQANKEALLQTEGVISVVESGGQ YQVVLGNKVAHVYNALEPLLAQQLTTKTSTKEKNSLGNRILNTVAAIFTPVVPAIAASGM LKGILAIAVMVANNFYQVDLKPLNTYIILSAASDALFYFMPVILGYSAAKVFKTNEYIAM VIGATLCYPTIVSLMTEESAVTLFGLHVTKANYVSTVIPIILAIFMLAYVQRFLEKVIPE VLKIIMVPTLSLLLMIPATLLLFGPIGIYLGDGVNWLYYYIMNFSPILLGGFIGGIWCVL VIFGAHRGLVPIGINDVARTGRQNLLAFAGAANFSQAGAAFGVFVRTKNKDLKAVAASAT VTALFGITEPAIYWANLRLKKPMIYAVASGAAGGALMGWGGSYGTAFANQGLLTIPVYAE AGTKAFICYLLGCGIAFFGAFLLTIFLGFNDLPLDESRQEPGLKTETGTVKEKQRIQAPV QGQLVSLDQINDEVFASQQMGKTLAIYPTEEQIVSPGNGQVTALYPTHHAIGLKLDNGAE ILLHIGINTVELKGRGFERFVKAGERVRLGQKLLSFDKQIIQAAGYDPTVLVIVTNTAEM AVIETTKQTEITPQTNLFFMQVKEQN >gi|307679014|gb|GL456783.1| GENE 303 319613 - 321073 1394 486 aa, chain - ## HITS:1 COG:L186875 KEGG:ns NR:ns ## COG: L186875 COG1502 # Protein_GI_number: 15673156 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Lactococcus lactis # 11 486 18 487 487 566 56.0 1e-161 MKIFVWILLFLLVINVIAALITVFRKPRSISSVLAWMMTLIFLPGIGFIIYLFCGRGIDG QEVFKLSDDEKQMVQRIKEKVDVDNKKAGRDKRYDLLYDAKVLNRYFRNMDASPLAKRNS LQLFTDGQEKFQALFEDIRAAKETVHVEYYAFFNDTIGNQFLDVLIEKLHEGVEVYLIYD PWGSPGANKKFFARYVDAGGKVAPFITSRDMIRKTRLNYHLHRKIVVIDGKIGWTGGFNV GDQYLNVTEKFGYWRDTHIRLVGTAVFSLQEIFIMDWNASVKYPEERMTYHEKYFKLPED HEVEHLSLQVVSDGPDSEEEILKSGFVRMIFSAEKSVWIQTPYLIPDDSMINALLVAVRS GVDVRIMIPCMPDHPFIYRATQYYANYLHKRGIKIYIYDSGFIHAKTMVIDDELAMVGTT NQDIRSYSLNFEVSTFIYNPDIAWMLAQVFEEDIEKSVLLTDEIIKKQGYWLRFKQNFSR LLSPVL >gi|307679014|gb|GL456783.1| GENE 304 321254 - 321805 593 183 aa, chain + ## HITS:1 COG:SA1727 KEGG:ns NR:ns ## COG: SA1727 COG4843 # Protein_GI_number: 15927485 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 7 177 11 179 200 174 52.0 7e-44 MVVDLKMLAMIFIINFAYITLNTIRFMLTMKGYRVIAPLVSMAEITIYVLGLSMVLNRLD NPLNLLVYALGYAVGISVGIKIEDYLALGYIMVSVILPSTTEQFHLPETLREHGYGVTQS VAYGREGERMVLEILSPRKNERTLYKLINQLEPRAFIISYEPKFISGGFWTKKVRKRNDA ISH >gi|307679014|gb|GL456783.1| GENE 305 321864 - 322748 788 294 aa, chain - ## HITS:1 COG:no KEGG:EF1610 NR:ns ## KEGG: EF1610 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 294 1 294 294 528 98.0 1e-148 MNDLAIYYHSPQQTKQYNHLLNQSLFFPLVTFMYEHREERIILRQLKAAFATEAKLEQFL SEMIDCQLIIRENRQYRLNFPIYTAAEVASLTLAEDELPKFKGTVTEQLFWLAESFWPQV FPEEEDYFFGVSGGPSFYQKQRLASAQLSMITLEKEKTEVPTMPRYFDYLGKEQPLPEAF SALYDLLGDVNPEYYLSQARRVIKQALRGRKVSTVPNIFQESLHLTQVITIDQDHLKLLL PVATEQAEPLEAQSDILAFYYEKIANRSAIERLVFMQQLIEQLGTNSLSYLRIN >gi|307679014|gb|GL456783.1| GENE 306 322820 - 323746 1330 308 aa, chain - ## HITS:1 COG:SP1534 KEGG:ns NR:ns ## COG: SP1534 COG1227 # Protein_GI_number: 15901378 # Func_class: C Energy production and conversion # Function: Inorganic pyrophosphatase/exopolyphosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 308 1 310 311 377 66.0 1e-104 MSKILVFGHQNPDTDAIGAAISFAYLQKELGKETEAVALGTPSEETQYALDYFNIEAPRV VTEAASETNQVMLVDHNEFQQSISDIAEVNILAVVDHHRIANFETADPLYYRAEPVGCTS TIIYKMFKENNVTIPAQIAGMMVSAIISDTLLFKSPTCTQEDIDAAHALADIAEINLEGY GLDLLKAGTNLSDKSAEVLLDLDAKSFPMNGKTVRVAQVNTVDLAEVLDRQAELEAAMAA ENAANNYDLFVLIITNILDSDSELLAIGAEQAKIEAAFNVTLVNNRAFLPGVVSRKKQVV PQLTEVFN >gi|307679014|gb|GL456783.1| GENE 307 323842 - 324606 740 254 aa, chain - ## HITS:1 COG:SP1976 KEGG:ns NR:ns ## COG: SP1976 COG1180 # Protein_GI_number: 15901799 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyruvate-formate lyase-activating enzyme # Organism: Streptococcus pneumoniae TIGR4 # 5 254 11 261 264 355 64.0 3e-98 MTTPVTGRIHSTENFGTVDGPGVRFIVFTQGCRMRCQFCHNPDTWKIGSGGRVVTTDEVL EEALRFRSYWGEKGGITVSGGEPLLQMDFLIDLFKKAKAQGIHTTLDTCGKPFTREEPFI SQFDELMKYTDLLLFDIKHIDNEQHKLLTTQSNDNILEMATYLSEIDKPVWIRHVLVPQR SDYDEYLIRLDAFIKTLNNVDKVEVLPYHTMGKYKWEELGIPYPLEGIEPPKNDRVENAK KLLHVEDYQGYLAR >gi|307679014|gb|GL456783.1| GENE 308 324683 - 326929 2587 748 aa, chain - ## HITS:1 COG:lin1443 KEGG:ns NR:ns ## COG: lin1443 COG1882 # Protein_GI_number: 16800511 # Func_class: C Energy production and conversion # Function: Pyruvate-formate lyase # Organism: Listeria innocua # 2 748 3 743 743 953 61.0 0 MKQWEGFKGDKWRTSVDTRDFIQNNYTEYKGDDSFLEPIAPSTDKLWTKLQELFEIQHEK NGVYDMDSDIPATITSHEPGYLIKEEEKIVGLQTDVPLKQAFMPFGGIKMANNALVSNGY ETDEEMTKIFTEYRKTHNQGVFDAYTAEMRLARKNKIITGLPDAYGRGRIIGDYRRIALY GIDYLMEQKKKDHDNTGNKEMTDDVIRLREEISEQYRALNDLKQMAASYGFDISRPAANA QEAIQWLYFGYLGAIKSQNGAAMSIGRISAFLDIYIQRDLEAGLITEFEAQEMIDHLIMK LRMVKFARTPEYNQLFSGYPIWATLSIAGMGIDGRSLVTKNDFRILHTLTNMGPSPEPNL TVLYSSHLPEGFRTYAAKIAKESSSIQFENDDLLRENWGSDDCAIACCVSATVMGKDMQF FGARANLAKAVLYAINGGVDEKTKMQVAPKYRPMTGDKLDYHEFMERYKDILDWLAELYV NTLNIIHYMHDKYAYEAPQLALMDTDLQRTFATGIAGISHATDSIMAIKHGEVEVIRDED GMAIDYVPTKEFPTYGNDNEEADAMANWILDYFMTQIKRQHTYRNSKPTTSLLTITSNVV YGKATGNTPDGRRAGKPLAPGANPSYQDGKFLGEKNGLLASLNSTARLEYTIALDGISNT QTINPNGLGKDDDTRINNLRNVLDGYFDKGGYHLNVNVFTNELLLDAQAHPEKYPNLTIR VSGYAVKFRDLTPEQQADVISRTSHDRL >gi|307679014|gb|GL456783.1| GENE 309 327220 - 329682 2865 820 aa, chain - ## HITS:1 COG:SP0855 KEGG:ns NR:ns ## COG: SP0855 COG0188 # Protein_GI_number: 15900740 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Streptococcus pneumoniae TIGR4 # 7 817 4 823 823 967 60.0 0 MEKRQEVQELTLEEIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDK GFRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMR YTEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATE IPTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVI LRAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQ IVVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVI INRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAE AIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQYGNP RLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEGDFLL YAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAVYPYK ELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLL DVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVIVTQR GGVKRMLAQELTQLGRAKRGLMVLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSK NYPISERTSNGSFVIDEQKDGQVMEVHEMHSAVIEEEQTN >gi|307679014|gb|GL456783.1| GENE 310 329695 - 331752 2722 685 aa, chain - ## HITS:1 COG:L0290 KEGG:ns NR:ns ## COG: L0290 COG0187 # Protein_GI_number: 15672961 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Lactococcus lactis # 7 643 6 641 644 962 77.0 0 MAKKINNEYNDASIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGN EINVTIQKDNSICVADSGRGMPTGMHASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGV GASVVNALSKWLEVHIVRDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDDTIF STTNFSYEILAERLRESAFLLKGVKITLTDERGEEPKEEVFHYEEGIKEFVAYLNEEKDT LTPVVYFSGAKEGIEVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKAYNEY ARKVGLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVDNVVG EQMGFYLQENSEMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQS RNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIY TIGAGVGPEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPP LYKVSKGTGKKSVIEYAWTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETR TLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIEQHVQFTLEEDGSILDRSEEDTSAPTGE SLLDAEKTKEAEQTDDTEISLFDIE >gi|307679014|gb|GL456783.1| GENE 311 331957 - 332385 545 142 aa, chain - ## HITS:1 COG:L158834 KEGG:ns NR:ns ## COG: L158834 COG1832 # Protein_GI_number: 15672137 # Func_class: R General function prediction only # Function: Predicted CoA-binding protein # Organism: Lactococcus lactis # 3 136 4 138 145 160 58.0 8e-40 MTFENPSQNQIFDILKQAKNIAVVGLSNKPDRTSYKIAEILQQHGYRVLPVNPVLKGETV LGETVYGALTEIPEKIDIVDVFRRSEFLPEVAAETLKTEAPVFWAQLGLENEEAANLLLN EGRQVIMNRCIKIELAKMADAE >gi|307679014|gb|GL456783.1| GENE 312 332473 - 332916 609 147 aa, chain - ## HITS:1 COG:lin1151 KEGG:ns NR:ns ## COG: lin1151 COG4766 # Protein_GI_number: 16800220 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Listeria innocua # 1 147 1 148 148 207 68.0 7e-54 MTELNREMIETLVRQIVTEKLMPTKQVDPSGIMSIKLPEIDVTEDDRLDTGNPADIVYTK DLFSLEESPRLGCGLMVMKDTTFDWTLEYDEIDYIISGQLDILIDGRKISATAGEIILIP KSSKIQFSVTGDARFVYVTYPADWQSQ >gi|307679014|gb|GL456783.1| GENE 313 332929 - 334029 1770 366 aa, chain - ## HITS:1 COG:lin1150 KEGG:ns NR:ns ## COG: lin1150 COG3192 # Protein_GI_number: 16800219 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Listeria innocua # 1 360 1 360 373 445 79.0 1e-125 MSINEIIMYIMVLFMIIGGIDKCIGNKLGLGEQFEEGIMAMGSLALSMVGIITLAPVLAN LLSPIVVPVYELLGADPAMFATTLLANDMGGFALAQQLANDPQAGLFAGAILGAMMGPTL VFTIPVALGIIQKDDQQFLATGVLSGIITIPFGLLAGGLTAGMPLSLIIPNLIPIIIVAA LIILGLWLAPKGMIKGFQIFGQGVVIVAIFGLVVGAIQLLLGITVIPGIAPVTEGIEVVG GIALTLAGAFCLVAVITKVFNKPLMKLGKVLGMNEVAAAGMVATLANNIPMFQMLKDMDN RGKIINIAFAVSASFVLGDHLGFTAGVAKEMIFPMIVGKLVGGITAIFVAIFMANRMLGK PETEVK >gi|307679014|gb|GL456783.1| GENE 314 334042 - 334305 507 87 aa, chain - ## HITS:1 COG:lin1148 KEGG:ns NR:ns ## COG: lin1148 COG4576 # Protein_GI_number: 16800217 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; C Energy production and conversion # Function: Carbon dioxide concentrating mechanism/carboxysome shell protein # Organism: Listeria innocua # 1 85 1 86 89 95 59.0 3e-20 MLLGKVTGSLWSTRKDEKLNGWKFMMVDILNQEDEKQGFLIAADNAGAGVGDKVLISQGN AARISAEDPNVPIDAMIVGVIDSTEEE >gi|307679014|gb|GL456783.1| GENE 315 334318 - 334917 513 199 aa, chain - ## HITS:1 COG:no KEGG:EF1620 NR:ns ## KEGG: EF1620 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 199 1 199 199 360 98.0 2e-98 MNVSEMENLIQQITDRICQQLLSSSYSVALAEAKEAFPEEMFVRFPDVNWVTKEQKLARG LVVKRLTISQVNAIAHLQETDELVKNILAFLFEGKPVLVLTPIPSVTKNSRLKYRLKQTI QENVDMCQQFGLIFYHDSENYAVFQAACQKQLRSLAETKRTYITEKQLIRMTESGVSLSK NAYLTPLAKDYARKHQLLT >gi|307679014|gb|GL456783.1| GENE 316 334932 - 335558 727 208 aa, chain - ## HITS:1 COG:lin1146 KEGG:ns NR:ns ## COG: lin1146 COG4869 # Protein_GI_number: 16800215 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Propanediol utilization protein # Organism: Listeria innocua # 4 208 6 208 213 270 65.0 2e-72 MDSMNEIVEEVVKRIQQQQQNTFEVEASGRHVHLSRQEIDALFGPGYQLTKVKDLSQPGQ FVCKERITVAGPKGLFQNVVILGPERSESQVEVSMTDTRILGINAPVRESGKTEGTPGVT LMNGSAVVTLSHGLIVAKRHIHMTPEDALKNKVSNSQIVQVKVEGTRPLIFDDVVVRISP RFATYMHIDYDEANACGLTKGARGYILK >gi|307679014|gb|GL456783.1| GENE 317 335571 - 336140 303 189 aa, chain - ## HITS:1 COG:no KEGG:EF1622 NR:ns ## KEGG: EF1622 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 8 189 1 180 180 296 97.0 2e-79 MTVITEDMLRNKRLKKELEDGTDFVFPVGSFLTPAAKSYLREHRINSSFSSTNPLLSEVH SVKASSQKQKQEHLSKETIYEIRHLSHLLYLPFLTNEALSTEGWLYFEQQQQWLEKFILE QSIVMEPVILESKVTILTNQQRQWRYSSKEIQLQLDKIILQLKGESQLFGLFQSWATELI STMAEISRN >gi|307679014|gb|GL456783.1| GENE 318 336208 - 336498 556 96 aa, chain - ## HITS:1 COG:lin1144 KEGG:ns NR:ns ## COG: lin1144 COG4577 # Protein_GI_number: 16800213 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; C Energy production and conversion # Function: Carbon dioxide concentrating mechanism/carboxysome shell protein # Organism: Listeria innocua # 1 92 1 92 94 113 91.0 8e-26 MSSTNALGMIETRGLVGAVEAADAMVKAANVTLIGKEQVGGGLVTVMVRGDVGAVKAATD AGAAAAERVGELLSVHVIPRPHTEVDAILPHATTEL >gi|307679014|gb|GL456783.1| GENE 319 336622 - 338100 1682 492 aa, chain - ## HITS:1 COG:lin1143 KEGG:ns NR:ns ## COG: lin1143 COG1012 # Protein_GI_number: 16800212 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Listeria innocua # 1 491 1 485 486 639 68.0 0 MELVDKDLRSIQETRNLIRKAKEAQQVLATFSQKQIDAIVQAVSEATFNQREKLAKMANE ETGFGIYEDKIIKNAFASKVVYDEMKDKATVGVIHDDAAKKVTEIAVPVGVIAGLIPSTN PTSTVIYKALISLKAANSIVFSPHPNALKSIIETVEIIQKAAIAAGAPEGCVSVIKTPTM QATSELMKNKETNLILATGGNAMVKAAYSSGTPAIGVGPGNGPAYIERSANVPHAVKQIM DSKTFDNGTICASEQSIIVETVNREAVKEELIKQGAYFLSPAEADKLAKFILRPNGTMNP QIVGRSVQHIASLVGLSIPKDRRLIVAEETHVGLKYPFSREKLAPIIAFYTVENWEAACA LSIEILKGEGAGHTMGIHTENKEVIREFGLRKPVSRLLVNTSGTLGGIGASTNLVPALTL GCGAVGGSSTSDNIGVENLFNLRRVAYGVRDLEEIRQEFGQTSTTSVATSCETTNQEELV NAVVAQVLARLN >gi|307679014|gb|GL456783.1| GENE 320 338091 - 338609 740 172 aa, chain - ## HITS:1 COG:lin1142 KEGG:ns NR:ns ## COG: lin1142 COG4577 # Protein_GI_number: 16800211 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; C Energy production and conversion # Function: Carbon dioxide concentrating mechanism/carboxysome shell protein # Organism: Listeria innocua # 2 169 4 165 165 116 45.0 2e-26 MKALGMVEVKGFLGAISVADAALKAADVTLLKAEIINGGLTTVELIGDVAAVQAAVEVGT EVAKELNCLIAHHVISRVDAQTEVILSDPEPKSAPEPMEQVEVIEEEIETPDLEEHTGTR QKLETQRVVDLRKQAYKMNLSSLKKSEIKFANKEALIQAIMAEIERSEDEWN >gi|307679014|gb|GL456783.1| GENE 321 338623 - 339276 1038 217 aa, chain - ## HITS:1 COG:lin1141 KEGG:ns NR:ns ## COG: lin1141 COG4816 # Protein_GI_number: 16800210 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Listeria innocua # 1 217 1 217 217 290 76.0 2e-78 MKNDRLGANVLSMKVIPNVDPALAKELSLKPEHRSLGIVTSDCDDVTYVALDEATKAADV TVVYGKSMYAGAANASTKLAGEVIGIIAGPSPAEVNSGLSVITQVIEEEASFYSANEDDS IVYFAHVVSRTGSFLSEQANIPEGEAIAYLIAPPLEAMVGLDAAMKAADVQMGVFYGPPS ETNFGGALLTGSQSACKAACSAFEQVIQNIADNPLSY >gi|307679014|gb|GL456783.1| GENE 322 339290 - 340201 1299 303 aa, chain - ## HITS:1 COG:lin1140 KEGG:ns NR:ns ## COG: lin1140 COG4302 # Protein_GI_number: 16800209 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine ammonia-lyase, small subunit # Organism: Listeria innocua # 1 300 1 293 293 405 72.0 1e-113 MNEKELKEMIAGILTEMVADNQAVSTATVTAEEKPVTTHVTETTEIEEGLIPDITEVDLR KQLLLKNAVDPEALLKMKAFSPARLGVGRAGTRYMTSSTLRFRADHAAAQDAVFSDVSED LVKEMNFISTKTICNSKDEYLTRPDYGRQFDEENSEIIRKNTTPKAKIQMVVGDGLSSAA IEANIKEVLPAIKQGLNMYNLDFDNVVFVKYCRVPAMDKIGEITDADVVCLLVGERPGLV TAESMSAYIAYKPTVGMPEARRTVISNIHKGGTPAVEAGAYIAEIIKKMLDKKKSGIDLK EAE >gi|307679014|gb|GL456783.1| GENE 323 340219 - 341583 1694 454 aa, chain - ## HITS:1 COG:lin1139 KEGG:ns NR:ns ## COG: lin1139 COG4303 # Protein_GI_number: 16800208 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine ammonia-lyase, large subunit # Organism: Listeria innocua # 1 454 1 454 454 753 79.0 0 MILKTKLFGKVYQFTSVKEVLAKANEEKSGDKLAGVAANSAEERVAAKVVLSELSLNDLF NNPVVDYDEDEVTRIIIDQVNMRIFESIKHWTVAELREFILSSETTDFDIKRISRGLTSE MIAAVCKLMSNMDLIVGAKKINIEKTANTTIGRPGTFSNRLQPNHPTDNVDGIMASVMEG LSYGAGDALIGLNPVDDSTESVKRILNKFEEFRSEWEIPTQTCVLAHVTTQMEAMRQGAP TGLVFQSIAGSEKGNTAFGLNAEILAEAQDLALHSGQAAGPNVMYFETGQGSELSSEANF GADQVTMEARCYGLAKKFDPYIVNTVVGFIGPEYLYDSKQVIRAGLEDHFMGKLTGISMG CDVCYTNHMKADQNDMENLAMLLATAGCTYIMGIPHGDDVMLNYQTTGFHETATIRETLG LRPIKEFEEWMEKMGLMENGKLTSRAGDASVFIK >gi|307679014|gb|GL456783.1| GENE 324 341601 - 343025 1507 474 aa, chain - ## HITS:1 COG:lin1138 KEGG:ns NR:ns ## COG: lin1138 COG4819 # Protein_GI_number: 16800207 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition # Organism: Listeria innocua # 4 474 3 473 473 560 60.0 1e-159 MSKETLLTVGIDLGTSTTQLVLSELTVENFASAFTVPRISISDKKVIYRSDIIFTPLLNQ SEIDAEPIKAFVAEQYRQAGIHKQDIQMGAVIITGETARKSNANNVLRALSGYAGDFVVA TAGPDLESIIAGKGAGAQTYSETKRKPVVNLDIGGGTTNLAVFKDGEVIDTACFDIGGRL IKLDQQQKITYIAPKIQEIINKKGLTLHLGDQATEQNLLPIISELVAVLENSIGLGTQSP FYQLLVTNHPLRKGEELPIVTFSGGVADCLNTTSTNLFKYGDIGLLLGKYLRKSLIFSEK EVLESAETIRATVVGAGSHTAEISGSTIAYREQILPVKNIPILKLAQEDETLTVTELGQR IQEKLNWHRIEETPQIALAIRGMSNPTFADIQRYGQGIVEGLASLVAEQIPIIVMVDEDM AKALGHALSAHLPKDYPFICLDSVKVENGDYVDIGLPVAEGAVLPVIVKTLVFN >gi|307679014|gb|GL456783.1| GENE 325 343116 - 344549 1278 477 aa, chain - ## HITS:1 COG:lin1137 KEGG:ns NR:ns ## COG: lin1137 COG3920 # Protein_GI_number: 16800206 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 2 472 3 479 485 409 48.0 1e-114 MKRLEQLCHQYTNLSESDIKELQRTARYLSSTTLYQSADVFIDVYKEMSQQALVVYHKPP AKTTSLYSGDVVGMEALLKNEPGVLRTMQTSLNSIGLLAVTQENRLIKQNIYPIRNEHRT IGVIIVEIAADEEIQADLQKEELNNCQLAKVAKSTSQVDALFIDQLAEAVLIFDAAGHLL ITNHNAQELYRKLGYRDNIIGMSYDNLSIDYTTFEYVLYQMKYKMSNQPIESKTTYLNYY FKVRKVWLASEEQLIMIIQDNTEFKEKEAEIISKSVAIREIHHRVKNNLQSVVSLLRIQE RRTQSPEAKKVLHESVNRIMAIAATHELLSKQVKDDVALRQTLEAVMYNFRHLFQGAQPI EMMMDVDPAIMVSSEQMVTISLVVNELLQNIFDHAFEPQTSGVVKLSGTLDNKMITITVT DNGKGYDVHQSNETSLGLMIVKSYVKDKLKGKITIESNKQGTKTCFYFEQNTSDVVH >gi|307679014|gb|GL456783.1| GENE 326 344550 - 345122 746 190 aa, chain - ## HITS:1 COG:lin1136 KEGG:ns NR:ns ## COG: lin1136 COG3707 # Protein_GI_number: 16800205 # Func_class: T Signal transduction mechanisms # Function: Response regulator with putative antiterminator output domain # Organism: Listeria innocua # 1 190 4 193 193 241 69.0 8e-64 MDGRIVIVDDEPITRLDIRDIVIEAGYEVVGEAADGFEAIEVCKKTQPDLVLMDIQMPIL DGLKAGKKIVQDQLASSIVFLSAYSDVQNTDKAKKLGALGYLVKPLDEKSLIPTIEMSIE RGKQTQLLLNQIDKLSLKLEERKIIEKAKGILVKENHISEEEAYQMLRTLSMNKRARMSE IAELIVMDDE >gi|307679014|gb|GL456783.1| GENE 327 345150 - 345497 425 115 aa, chain - ## HITS:1 COG:lin1108 KEGG:ns NR:ns ## COG: lin1108 COG4810 # Protein_GI_number: 16800177 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Listeria innocua # 2 115 5 116 116 150 72.0 7e-37 MEEKQRMIQEYVPGKQVTLAHIIASPNKEIYTKLGLPDGTSNALGILTITPSEAAIIAVD IATKSGDIQIGFIDRFSGSVVISGDVSSVEAALQAVIEGLQQILNFSVTCKITRT >gi|307679014|gb|GL456783.1| GENE 328 345657 - 346787 1140 376 aa, chain - ## HITS:1 COG:lin1135 KEGG:ns NR:ns ## COG: lin1135 COG1454 # Protein_GI_number: 16800204 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Listeria innocua # 1 376 1 378 379 409 55.0 1e-114 MKTIHFPTELWVGEGALANLETLHDRRVFIVTDPFMVDSGFVNEVTKHLTKSEWQIFSDI IPDPPIDKIAAGIKQLATFQGDTILALGGGSAIDAAKAMKFFGKRTLQTQIAEFIAVPTT SGTGSEVTNFSVITVAETGTKIPLVTDEIQPEIAILDTNLVMSVPPKITADTGMDVLTHV IEAYVSTEANPISDALCEKVVRLVFDNLEIAFNEGSNQQARENMHLASCMAGMAFNVTSL GLNHGIAHAAGARLHVPHGRMNAMLLPEVIAYNSGLANGKVANEPTAKRYAQLANCLNDT QTTNARIGVQQFIRQIKQLRKKLNMPATFSDYGLPKEEVQAAIPKIAEGALMDGCTKTNP VQPTAAEVTKILNSIL >gi|307679014|gb|GL456783.1| GENE 329 347274 - 347855 866 193 aa, chain - ## HITS:1 COG:lin1172 KEGG:ns NR:ns ## COG: lin1172 COG2096 # Protein_GI_number: 16800241 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 190 1 188 188 207 55.0 7e-54 MKIYTKTGDKGMTKLVGSSTVAKDSDRVESYGTIDELNSWVGYIISQLPQENQEIKEELE ALQHLLFDAGTDLSTPIEAQRPFKLQKASVHWLEQRIDFYTAQSPDIDRFILPGGTPAAS MVHVARTIARRAERIIVRLNWTAKINEEVLIFTNRLSDYFYALARYLNVQAQRPDVFYER SEMVFHKIKEDGL >gi|307679014|gb|GL456783.1| GENE 330 347852 - 348295 608 147 aa, chain - ## HITS:1 COG:lin1109 KEGG:ns NR:ns ## COG: lin1109 COG4917 # Protein_GI_number: 16800178 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Listeria innocua # 1 143 1 143 143 164 56.0 6e-41 MKRIILMGAIGCGKTTLCQALQGKELIYDKTQAVEFHTEMIDTPGEFILHRQYYNALNVT AAEADVIGLVQSAVETQQVFSPGFGSIFPKEIIGILTKIDLAQDSQQLEIVRQQLKSAGA TRIFEISSVEKIGLQELVDYLEEDEAE >gi|307679014|gb|GL456783.1| GENE 331 348437 - 349204 220 255 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 226 1 226 245 89 29 2e-16 MIELKKTAVTLQQTPILKDISLVFPTGSKTCILGPNGCGKTTLLKTIAGLVPYSGSVLID GQEVHGQKRKELATKVAMMSQFTTVAFDYTVYETVLMGAYRQQAQRFLPIVSKQEKERVL YYLERTGLLPLKDKVVNQLSGGQQQRVFLAKLFVQDPEIILLDEPNNHLDIRYQQELIQQ LNEWSAQEGKTLIGVFHDIRLALTLSEKIVFMKQGKVAAQGDFQTLASKEFLQTIFETDI VSYFQKQHKVWETIQ >gi|307679014|gb|GL456783.1| GENE 332 349201 - 350208 1125 335 aa, chain - ## HITS:1 COG:BS_yvrB KEGG:ns NR:ns ## COG: BS_yvrB COG0609 # Protein_GI_number: 16080370 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Bacillus subtilis # 18 332 29 348 353 203 40.0 5e-52 MSKKTCLILMLLISMSMLFLGIKIGSVQISLTDLLQILVKKTVSEDGILEGIIWNVRLPR VVMAYLVGAGLAVSGTVMQSLLGNPLASSYTLGVSAGASLGAALIMVTGVTASILGAFLL PLTGFIFGLATVFLVLLFTQTMDSQMSNQTVVLVGMIMTLFVGAILTLITALFQDYLKQL VFWQMGSFSGSNWQKIAIYCPILLVSSLFLWFDANALDVLGLGEEHAMLSGVEVKTAKLR IILLASLLAGSAVSFVGVIGFVDLIAPHIVRRYLGATHRWLIPGSAILGGTIMVIGDTIA RTILSPREIPIGAVTALIGAPFFLYIYFKKRRVAA >gi|307679014|gb|GL456783.1| GENE 333 350201 - 351160 1283 319 aa, chain - ## HITS:1 COG:BS_yvrC KEGG:ns NR:ns ## COG: BS_yvrC COG0614 # Protein_GI_number: 16080371 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Bacillus subtilis # 21 315 20 314 314 154 32.0 2e-37 MKKFTLTMMTLGLVATLGLAGCGKQEKKATTSSEKTEVTLPTKDRSGKEITLPKEATKII SLVPSTTEVIEDLGKTDQLIAVDTQSSTMMTDLKKLPQMDMMAVDAEKLIALKPQIVYVN DINLASSESVWKQVEDAGITVVNIPTSTSIKAIKEDVQFIADSLSEHEKGQKLIKTMDQE IDEVAKIGKTIKKPKTVLFEVAALPDIYSFGNGTFLNEMIETIGAKNVLANEKGWLPVTE EAAIAAKPEVILTNVNYMKDPAKEILARKNWENVPAVQNKEVFEIDNMSSSLPNNHITKA LKQMAKAVYPEEYKDLKDE >gi|307679014|gb|GL456783.1| GENE 334 351713 - 352342 648 209 aa, chain + ## HITS:1 COG:SP0851 KEGG:ns NR:ns ## COG: SP0851 COG0344 # Protein_GI_number: 15900736 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 1 205 1 204 213 194 53.0 8e-50 MKIVILLLVAYLLGSIPSGVWIGKLFFKKDIRQFGSGNTGTTNTFRVLGKPAGITVLLMD ILKGTLATSLPYLFGLQGVNPLFFGVAAVLGHTFPIFANFKGGKAVATSAGMLLAYSPTF FIYSALIFVICLYLTSMVSLTSMISAVLITLSTIILPFTVPAILPTFNWLLTVIAIALTT FIFVRHRENIQRIKNGTESRLSFGLRAKK >gi|307679014|gb|GL456783.1| GENE 335 352384 - 353259 1157 291 aa, chain - ## HITS:1 COG:lin1322 KEGG:ns NR:ns ## COG: lin1322 COG2017 # Protein_GI_number: 16800390 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Listeria innocua # 3 290 2 289 290 256 43.0 4e-68 MTVQIENEFLIATFAEEGAELVSLQSKETGIEYIWQGNPEFWARHAPVLFPIVGRLKEDT YMYQNQAYHLTQHGFARDQVFDVIEKGGEEVSFSLKSTKEIKKKYPFDFELVITYTLEHQ ELTVNYQVENTGKEEMYFGIGGHPAFNVPLESSLTFEDYYLSFSPKKSRTQIPLAGPFID LANKTLAQTNISFDLTHQLFENDAMIFETKGQTAITIATDESDHQVTLSYPEMPFVGIWS PTPKEAPFVCIEPWCGIADAVDATGQLAEKFGINKLPANELFKTQYMISVK >gi|307679014|gb|GL456783.1| GENE 336 353293 - 354075 935 260 aa, chain - ## HITS:1 COG:SPy1777 KEGG:ns NR:ns ## COG: SPy1777 COG4465 # Protein_GI_number: 15675618 # Func_class: K Transcription # Function: Pleiotropic transcriptional repressor # Organism: Streptococcus pyogenes M1 GAS # 1 260 1 259 260 273 56.0 2e-73 MATLLEKTRQVNELLQKNNLFDVQAELPYNKMAMILGDILESNAYIISSSGDLLGYTEKL DVNNARIKNMFKEKKFPQGYTEAVDMLKVTEANIPIDSDLTAFPFESRELYPFGLTTIVP LYGAGKRLGTIILARVEKSFNEDDLVLAEYSATVVGMQILYHQSRTIEAEVRSATAVQMA INTLSYSELKAVHAIFEALDGEEGRLTASSIADEIGITRSVIVNALRKLESAGIIESRSL GMKGTYLKVLNQQFIKELEK >gi|307679014|gb|GL456783.1| GENE 337 354096 - 355202 961 368 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 1 368 102 466 466 374 53 1e-102 AMVRDLVENAIQIVEKQQYSRVYAQALKKANQRLVKVLVPGIKKEQKQAGGNQFEQMMNM FNMAQQQQEAQEEVTEDIRTNRQTILEQLEKGLLDNREVTIEIEEPKKTMPAMNNGLEQM GIDLNETLGALSPKKKIERTVTVKEAQELLVKEESAKIVNDADIHSEAIRLAESSGIIFI DEIDKITSKSQQNSGEVSREGVQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKP SDLIPELQGRFPIRVELDDLTADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIER LAHIAYDVNRDTDNIGARRLHTILERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIVQN EDLSRYIL >gi|307679014|gb|GL456783.1| GENE 338 355184 - 355660 688 158 aa, chain - ## HITS:1 COG:lin1317 KEGG:ns NR:ns ## COG: lin1317 COG5405 # Protein_GI_number: 16800385 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent protease HslVU (ClpYQ), peptidase subunit # Organism: Listeria innocua # 5 153 2 150 179 211 73.0 6e-55 MVESQFHSTTICAVEKDGKFAMAGDGQVTMGESVVMKGTAKKVRRIYNDEVVVGFAGSVA DAFTLEEKFEGKLNEYNGNLTRAAVELAQEWRTQQSMQKLEAMLIVMNKEEMLLVSGTGE VITPDDGILAIGSGGNFALSAARAMKNFGDKEMPWFGI >gi|307679014|gb|GL456783.1| GENE 339 355689 - 356588 877 299 aa, chain - ## HITS:1 COG:lin1316 KEGG:ns NR:ns ## COG: lin1316 COG4974 # Protein_GI_number: 16800384 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Listeria innocua # 2 299 3 300 300 312 54.0 5e-85 MEEKNWPELFARYLIVERGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLS ELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDA LFESAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVP FGSFAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNA EIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHPRA >gi|307679014|gb|GL456783.1| GENE 340 356800 - 358107 1675 435 aa, chain - ## HITS:1 COG:lin1315 KEGG:ns NR:ns ## COG: lin1315 COG1206 # Protein_GI_number: 16800383 # Func_class: J Translation, ribosomal structure and biogenesis # Function: NAD(FAD)-utilizing enzyme possibly involved in translation # Organism: Listeria innocua # 1 434 1 434 434 650 73.0 0 MTKKVTIIGAGLAGSEAAWQVANAGVPVDLYEMRPVKKTPAHQTENFAELVCSNSLRGNS LTNAVGVLKEEMRRLNSIIIGSADQTAVPAGGALAVDRDSFSETITEKIKSHPLITIKNE EITDIPEGIVIIATGPLTSESLSQKIQEFNGSEGFYFYDAAAPIIDKSTIDMDKVYLKSR YNKGEAAYLNCPMTEEEFNAFHEALVNAEVVPLRTFEKEKFFEGCMPIEVMAQRGIKTML FGPMKPVGLEDPKTGKRPYAVIQLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLEN AEFVRYGVMHRNSFMNSPELLKPTYQSKKRDDLFFAGQMTGVEGYVESAASGLLAGINAA RLAKGEEPIEFPRETTLGSMAYYITHAEGKHFQPMNANFGLFPELPERIRDKKERYEAIA NRALDVQAQVIQSLD >gi|307679014|gb|GL456783.1| GENE 341 358215 - 360293 2098 692 aa, chain - ## HITS:1 COG:L0298_1 KEGG:ns NR:ns ## COG: L0298_1 COG0550 # Protein_GI_number: 15673212 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Lactococcus lactis # 4 574 26 589 589 810 71.0 0 MAYKYLVIVESPAKAKTIEKYLGRNYKVVASVGHIRDLPKSKMGIDIENNYEPHYISIRG KGDVIKSLKAAAKKAEKVYLAADPDREGEAIAWHLAYLLGLDLKDKNRVVFNEITKEAVK AAFKEPRTINVDLVDAQQARRILDRLVGYSISPILWRKVKKGLSAGRVQSVALKMIIDRE NEIREFKPEEYWSIDGNFQKGRKKFKANFWGVDGKKKKLPNAEAVKEITSRIDGKDYDVT KVEKKERKRNPALPFTTSSLQQEAARKLNFRTRKTMMVAQQLYEGIALGKQGTVGLITYM RTDSTRIADSAKAEAAEFIEKTYGDEFSAHGGRKAKNTQGAQDAHEAVRPSSVLRTPDEM KKYLDKDQLKLYTLIWSRFVASQMTPAILDTMKVTLQQNGVTFIANGSKVKFKGFMQVYV EGRDDGKEDKENILPELVEGDVVKSVDIEPKQHFTQPPARFSEATLIRTLEENGVGRPST YAPTLETIQRRYYVKLTNKRFEPTELGEIVNSLVSEFFPQIVDTHFTATMETDLDKVGEG QEKWVEVVDRFYKPFEKELTNAEEKIEKIQIKDEPAGFDCELCGHPMVIKLGRYGKFYAC SNFPDCRNTKAIVKEIGVTCPVCHEGQVIERKSKKNRIFYGCSRYPECDFTSWDKPVGRP CPKCGQYLVEKKVKGGKQVVCINGDYEENVQK >gi|307679014|gb|GL456783.1| GENE 342 360478 - 361131 535 217 aa, chain - ## HITS:1 COG:SP0288 KEGG:ns NR:ns ## COG: SP0288 COG1266 # Protein_GI_number: 15900222 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Streptococcus pneumoniae TIGR4 # 2 217 4 216 230 81 29.0 1e-15 METVVRKRWLFGMQLLGFLILDQIPLMMVSVVQFSTENFWFRFVSGLVAVGLGAYFVYLF VAFLKKKKLITWTFFGIKETLPVVLLGLVIIFCVRIFGDFLLRLEGLETTSNQQSVEEIV QAIPKGLILIFAGVIGPIFEEGIFRVGIQAFFKPASKIGILVSSILFALVHTPTDIGSFV IYWGMGLALSWVYLRTGRFEAAVLTHFVWNVIGILML >gi|307679014|gb|GL456783.1| GENE 343 361222 - 362085 818 287 aa, chain - ## HITS:1 COG:SP1266 KEGG:ns NR:ns ## COG: SP1266 COG0758 # Protein_GI_number: 15901126 # Func_class: L Replication, recombination and repair; U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake # Organism: Streptococcus pneumoniae TIGR4 # 81 287 79 284 286 219 52.0 5e-57 MEILQRQLLFKLAVCQGIGNLGILKVLQEAVAQKRVDFSSTEIIRIAEIKKYRELFEQSW LHHTIHSEALYIRQCQHQFMTILDAVYPKLLREIYNPPAILFYRGNLQLLSRRKIGIVGA RYATSYGLRVTEALVPKIVKEGFTIVSGLAKGIDSRSHEMAIQNGGQTIGILGTGLDVYY PYEKKELQQTMKQNQLVLTEYVNGSGPKKYHFPARNRIIAGLSLGVCVMEARKNSGSLIT AQAAMDYGREVFAVPGSIFQSFSTGCHELIQDGAKCVQTIDDICEEL >gi|307679014|gb|GL456783.1| GENE 344 362146 - 362913 1263 255 aa, chain - ## HITS:1 COG:SPy1162 KEGG:ns NR:ns ## COG: SPy1162 COG0164 # Protein_GI_number: 15675138 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HII # Organism: Streptococcus pyogenes M1 GAS # 5 254 4 256 263 268 56.0 5e-72 MAKESIQAIKEALLTVTDATDERLASWREDERSGVQQAIKQWERRQLAKEKEWQLFKEMS QFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLY NQIQEQAVAIGLGIADQGVIDQINIYQATKQAMKMAIDDLAFAPDYLLIDAMQLDVPQPQ ESLIKGDARSISIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKYGV TPIHRRTFAPIKDMI >gi|307679014|gb|GL456783.1| GENE 345 362915 - 363766 990 283 aa, chain - ## HITS:1 COG:L128951 KEGG:ns NR:ns ## COG: L128951 COG1161 # Protein_GI_number: 15673276 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Lactococcus lactis # 1 275 1 275 282 323 54.0 2e-88 MTIQWFPGHMAKARREVSEKIKYVDIVFELVDARLPLSSRNPMMDQIVQQKPRLVLLNKG DLADNDQNKKWQHYFQKKGYQTLVINAQQNKGINKIVPAAKEALKEKLAREQAKGLKPRA IRAMCIGIPNVGKSTLMNRLVGKKIAQTGNKPGVTKGQQWLRSGSQLELLDTPGILWPKF EDEEIGKKLALTGAIKDQLLHLDDLAIYGLEFFARFYPQRLTERYGLTEEELFLPAPEQL MLISQKRGFRDDYNRASEMIILEIRSGKLGTYTLDRWEELGDE >gi|307679014|gb|GL456783.1| GENE 346 364042 - 364983 945 313 aa, chain - ## HITS:1 COG:L157055 KEGG:ns NR:ns ## COG: L157055 COG1893 # Protein_GI_number: 15673305 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate reductase # Organism: Lactococcus lactis # 1 313 1 312 312 409 62.0 1e-114 MKIIIAGAGAMGSRFGLMLHQAGNDVIFVDGWPEHIEAIRKNGLVADFNGEVVTAKIPIY PQTEVASIDFTADLVILFTKAMQLEGMLEALEHFLNKNTKVLCLLNGIGHEDIIKKYVPY ENILLGNTMWTAGLEGPGKVKLFGNGSIDLQNLGAQSEQAAEAVIKVLNNAGLNARYSEN ILSSIYKKACVNGTMNGLCTLLDCNMADFGETEQADQIVQQIVNEFLAVAEVEQVTLDKQ AVLQQIRSCYNRETIGLHHPSMYQDLITNHRLTEIDYINGAIVRKGKAYGIATPYCQFLT ELIHCKENLLHAK >gi|307679014|gb|GL456783.1| GENE 347 365160 - 366050 788 296 aa, chain + ## HITS:1 COG:SA2330 KEGG:ns NR:ns ## COG: SA2330 COG0583 # Protein_GI_number: 15928121 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Staphylococcus aureus N315 # 1 295 4 292 295 116 25.0 6e-26 MNIQLLKYFIEIVNTRSLSAAARNLFVTQPTLSLALKKMESELGTALFDHSDQPFQLTDT GVYLYEHGQEVVFQFDQLVTDIREMNQKPVKKQLRLGLTTLFAVQFMKEISRFLTTHPHV NLILQQDGSPKLQTMLANKEIDMGLISFPNTLPEIIHIEPLETTTKGYHVYVVVPESNPL SQYEKLTFKDLKDQRFSSLSDNFMIGRLLLDRTRSFGYEPNIILHNDDLQVLLYSLQKNN SICLLPIEYYEVGKSQGLKWIPLKDKFDYFPIGIALRRDFSMTEDVRDFIQIIKEN >gi|307679014|gb|GL456783.1| GENE 348 366059 - 367111 1317 350 aa, chain - ## HITS:1 COG:SPy0851 KEGG:ns NR:ns ## COG: SPy0851 COG3641 # Protein_GI_number: 15674884 # Func_class: R General function prediction only # Function: Predicted membrane protein, putative toxin regulator # Organism: Streptococcus pyogenes M1 GAS # 15 350 12 352 352 249 49.0 5e-66 MPTDKLDAQLTPRIFFNKVLAGTASGTIIALIPNAVLGAILKYFAEYKIIEMIIHAAQIF QLATPLIIGGLIAFQFGLTPQKMMIAGGAAFAGSGVIKFNSEVKGFIGAGTGDIINIMIT ASVAVLLLLVIDKKFGSVEIIALPIVVGVGAGLFGMLIYPYVTQITVAIGKVINNFTDFQ PIIMSILIACSFAALIISPITTVAIGLAIQLNGLSAGAAAMGIAATTVVLVINSWNVNQS GVTLAVSLGGMKMMMPNLFKYPIILIPCLFTATISAIPVVLFNISGTPQSAGFGLVGLVG PLASLDAGLGILPLLFSWFVVPIVAGLFSKFLFEKVLKLYDSKVVFAYQG >gi|307679014|gb|GL456783.1| GENE 349 367255 - 368553 1594 432 aa, chain - ## HITS:1 COG:BS_bfmBB KEGG:ns NR:ns ## COG: BS_bfmBB COG0508 # Protein_GI_number: 16079459 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Bacillus subtilis # 1 432 1 424 424 372 48.0 1e-103 MATKEIKMPHLGESVTEAAIVQWLVKPGDSVKRYDPLMEVVSDKVTTEVPSDFDGVVKEF LISLDTDVPIGTAVMTLETEETTEKTEVATLAPVKEASAEQAQEHETVATTSTATSHQKN NGRYSPAVLKIAQEKKIDLTQVTGTGRDGRITRKDVTNFTPTQARTPEKTVSPGTSPSIS EEPVASQNESAATASPTETSPDKIVSADPVRKAIAKKMVQSVNEIPHAWLMVEADVTNLV QLRNSLKDEFKQQEGLSLSFFPFFAKAVIQALKKNPKINTSWDDGSIIYHKDVNLSIAVT TDEHLYVPVIQQADNYSIAGLAKEINRLAQEVRQGTLASKEMQGGTFTLNNTGTLGSVQS MGIINHPQAAILQVESINKRLVPTADGGFKVADMVNLCLSIDHRILDGQQAGKFLRDVKD NLAKYNADTDVY >gi|307679014|gb|GL456783.1| GENE 350 368577 - 369563 1431 328 aa, chain - ## HITS:1 COG:lin1410 KEGG:ns NR:ns ## COG: lin1410 COG0022 # Protein_GI_number: 16800478 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit # Organism: Listeria innocua # 1 328 1 327 327 424 61.0 1e-119 MAEMTYLEAINLGISEEMARDEKVVIFGEDVGGDKGGVFGVTKGLAAKYGDERCFNTPLT EGLIGGLAVGLGLMGYRAIGEFQFADYILPATNQLLSEARTMRYRTKGDWTAPIVYRTPY GGGVRGGLYHSQSTEKVFCGQPGLRVVTPSNPYDAKGMIKAAIRSDDPVIFYEHKRLYRL LKDEVPADDYIVPIDKANVVRTGSDLTVISYGMTLQLALAAAEKLAAEGIDAEIVDVRSL YPLDRETLVAAAKKTGKVLLVTEDNKEGSVMSEIAAMISEDALFDLDAPIQRLAGPDCPS MPYALPLEREFLINEEQVLAAMKELAEF >gi|307679014|gb|GL456783.1| GENE 351 369585 - 370571 1266 328 aa, chain - ## HITS:1 COG:lin1409 KEGG:ns NR:ns ## COG: lin1409 COG1071 # Protein_GI_number: 16800477 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit # Organism: Listeria innocua # 3 326 2 325 331 323 53.0 2e-88 MKTLKKSGLSKEELIQAYRQVLRGRRLDERLWQLTRIGKTSFNISGQGAEVAQVAMAMAF DPQKDYFLPYYRDMTACLVWGMTSKDILMGSFGKEADPSSHGRQMPNHYGSKEHNIVSFS STVSTQMPLATGVGYAAQLQKADFVALTTTGEGSANQGEVQEAMNFAGVKKLPVIFVVEN NEYAISVPIEEQYANKRMADRAKAYGFEGVTVDGSDFTEVYLAFKEAVKAARGKKGPKLI ELMVSRLTSHSADDDQSVYRSKEEIEEMKKNDAVKLFEKQLLEEGYLTAEDIAKIDEEIR AEINQATDEAEAMPDPVPTSILEEVYAK >gi|307679014|gb|GL456783.1| GENE 352 370588 - 371997 830 469 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 6 468 5 457 458 324 38 4e-87 MAEQTDLLILGGGTGGYVAAIRAAQKGLKVTIVEKYKLGGTCLHKGCIPTKALLRSAEVF DTLKQAASFGIETEAASIDFSKIQQRKEGIIEQLHKGVEGLCKKNKIKILAGEGAILGPS IFSPVSGAVAVTFNDPTREEEIIVPKNVIIATGSSPKTLPNLPLDEEFILSSDGMLELEE LPESIAIIGGGVIGVEWASLLNSLGVNVTIIEFLDRLLINESATISKELKKRLEQRGVNI LLGSKVQEAKVTGQKVQVEVAGQETLTVDKVMVAIGRQPNVNKLGLQNTSVKYTDKGIEV NEFYQTTEGHIYAIGDCIDTLQLAHVAMKEGELAVQHLLGETVEPLNYTNVPRGVYTNPE IASVGYTRETLPADKEVVIGTFNFNGNGKSLVYGETDGFIEVIRDKKTDDLLGVSMIGPH VTDLIAEASTAMYLDAAPIEIGEAIHAHPTMTEVLQEAALDTYGLAIHK >gi|307679014|gb|GL456783.1| GENE 353 372003 - 373085 1256 360 aa, chain - ## HITS:1 COG:lin1407 KEGG:ns NR:ns ## COG: lin1407 COG3426 # Protein_GI_number: 16800475 # Func_class: C Energy production and conversion # Function: Butyrate kinase # Organism: Listeria innocua # 4 352 5 355 355 352 49.0 7e-97 METVLVINPGSTSTKLALFANHDCLAEETLRHSVQELAPFENVVSQTPFRKQMIAEFLET HNITQLAAVVGRGGLLKPILGGTYLVDQQMLEDLRTERFNTHASNLGAILANEFAEKYHV PAFIVDPVVVDELQPLARISGLKGIQRRSVGHALNQKAVARKIAEDLGKTYEQSNFIVVH LGGGISLGAHQKGRMVDVVNGLDGEGPYTPERSGALPLVEFAQWILEQELTISQVKKLIA GNSGLKSYLGETDLRHIQAQIAAGDQTANYYLKGMCYQIAKSIGEMAVVLEGTIDAIILT GGAAYSQTVVQEISQKVTWIAPIKVYPGEMEMAALYEGVNRVLTGEEQALNYSEAKIEQE >gi|307679014|gb|GL456783.1| GENE 354 373104 - 373925 666 273 aa, chain - ## HITS:1 COG:lin1406 KEGG:ns NR:ns ## COG: lin1406 COG0280 # Protein_GI_number: 16800474 # Func_class: C Energy production and conversion # Function: Phosphotransacetylase # Organism: Listeria innocua # 2 273 16 286 288 194 41.0 2e-49 MITVSIAGGSQPEILQLVKKALKEAEQPLQFIVFDTNENLDTENLWKYVHCSDEAAVAQE AVSLVATGQAQILLKGIIQTHTLLKEMLKSEHQLKNKPILSHVAMVELPAGKTFLLTDCA MNIAPTQATLIEIVENAKEVAQKLGLHHPKIALLSAAENFNPKMPSSVLAKEVTAHFNGQ QEATVFGPLSLDLATSEEAVAHKRYSGPIMGDADILVVPTIDVGNCLYKSLTLFGHAKVG GTIVGTKVPVVLTSRSDSTESKFHSLRFAMRQV >gi|307679014|gb|GL456783.1| GENE 355 374207 - 375241 1093 344 aa, chain + ## HITS:1 COG:L171552 KEGG:ns NR:ns ## COG: L171552 COG1434 # Protein_GI_number: 15672559 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 19 311 19 308 310 342 66.0 8e-94 MALLLFFLFIALLGFGILKINNRSILGGITLASGTLLSLVTLLFIGLDKIYLHFKNGDLI TLAIAYLLIPAVFIGICLYFIFNSRTMQTKEGKSVTAKLSAGLGLNLLIALPAFLYLLSV GTAQIPYVLFLFLLFLLLMDLLLTFLFAAYVLYSWMYQMIPLKKAVDYIIVLGSGIRSEE VPPLLKSRLDKGIEYYEKNPTAKFVVSGGQGPDEPVAEAFAMKKYLLSQNIPAEAILMED QSTTTYENMLFSKAIIQADWQKMPSDSKQPSVIFSTNNYHVLRGAMYAHRVGLKAEGVGA PTALYFLPTALIREYIALLVHDKRIVLFVFLLVTLLLGISILPI >gi|307679014|gb|GL456783.1| GENE 356 375301 - 376023 630 240 aa, chain - ## HITS:1 COG:no KEGG:EF1665 NR:ns ## KEGG: EF1665 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 240 1 240 240 411 100.0 1e-113 MNANRLKLLMMGLMVLDHISYFVPPEWALIFHVITRCVGVFFGYMAVEGFNYTRNVYRYN GRLYIWAAIMFVGNTLLNHLVNNPAVAVHNNIFFTLALGVSMLIVTKAMLEMPKISLKIV LLISILAILGIGAMFAEGGIVMLPFMLITYLARKRLVLRNCLYGALALFFLVTSFQWLGD WPTTIEMLAYNSDFMFITVLPFISLYNGERGSKAPFFKYLFYGFYPLHLWLIALIANYVH >gi|307679014|gb|GL456783.1| GENE 357 376128 - 376826 523 232 aa, chain - ## HITS:1 COG:no KEGG:EF1666 NR:ns ## KEGG: EF1666 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 232 1 232 232 373 99.0 1e-102 MKKQYYWNIPDNLLNSLKQRKKLYNFYKNEQNKARELVENCQSVLFPELVASLNKIDERI KLLIFYQNLEDCELSEEEIITVIEREYFVTFYETIEEPTTEIISSHSMYYLLQQPTKEML WDLDFSNMLKQGQLVDLMDYQKLTKCYQKLQNQAKNLIEKLNKETFYTFYSQLLLIDCQC KLLIEEALLKEESLMTVDECLIAIKQEIRKIHFEQFKYQHYLFEDLSLRYQV >gi|307679014|gb|GL456783.1| GENE 358 377077 - 377871 857 264 aa, chain + ## HITS:1 COG:BS_yvaG KEGG:ns NR:ns ## COG: BS_yvaG COG1028 # Protein_GI_number: 16080412 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Bacillus subtilis # 1 264 1 264 264 273 54.0 3e-73 MDLHLTNKLALITGSTKGIGKAIAIEMAREGTDVIINGRNEAEVTKVVKEIQTMFPNTHP QAGTADISIESQRATLLEKFPKVDILVNNMGIFEPMEYWDIDDATWEKFFTVNVLSGNAL AKAYLPKMLAQDFGRIIFIASEEAVMPSGEMPQYSMTKTMNLSLAKSLSNLTVGTHVTVN TVMPGSTLTEGVEKMLEDMYADSDIPKEDWEKDFMKNHRSRSQIQRLIRPEEIGRFVTFV ASPDSSSFSGEALRIDGGLVPTIF >gi|307679014|gb|GL456783.1| GENE 359 378000 - 378428 553 142 aa, chain + ## HITS:1 COG:SA2308 KEGG:ns NR:ns ## COG: SA2308 COG1846 # Protein_GI_number: 15928099 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 141 1 141 144 122 44.0 2e-28 MTQQQEALKAYIGLLRTSHRLEQLAKQDVTCYDLNITEFSVLELLLHKGPQTIQKIKEKI LIASSSTTYVIDQLHKKGYVTRTPSEKDRRITYVELTEAGKTLIEEIFPMHAKRIAEAFE QLSSEELTLLQKTLRKITNETK >gi|307679014|gb|GL456783.1| GENE 360 378439 - 379401 1281 320 aa, chain + ## HITS:1 COG:SA2307 KEGG:ns NR:ns ## COG: SA2307 COG0346 # Protein_GI_number: 15928098 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Staphylococcus aureus N315 # 1 319 1 319 319 443 66.0 1e-124 MKKEDQLLGIHHVTAMTSDAEKNYHFFTDVLGMRLVKKTVNQDDIYTYHTYFADDLGTPG TTMTFFDFPNNPKGLKGTNTISRTGFRVPSDAALTYYENRFNEFAVKHTGISEEFGKKIL RFWDFDDQAYQLISDELNQGVAAGTPWKKGPVPTEFAIYGLGPVEIAISYFHEFKEVFEE ILGFHVVAQEGNRYLLEVGQGGNGAQVVLVDDDTSSQAQQGYGEVHHVAFRLADRKSLGT WQALFDHLGLQNSGYVDRYYFESLYVRIGHILVELATDEPGFMGDEPYETLGEKLSLAPF LENRREYIESVIKPFNTKRA >gi|307679014|gb|GL456783.1| GENE 361 379414 - 380016 560 200 aa, chain + ## HITS:1 COG:SA2306 KEGG:ns NR:ns ## COG: SA2306 COG0400 # Protein_GI_number: 15928097 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Staphylococcus aureus N315 # 1 184 1 184 197 216 55.0 2e-56 MHSIFKKGHPEAPVFVLLHGTGGDETALLPIAQELNKQATVLSIRGDVSENGMNRYFKRL AEGHYDLEDLEKRGEALHKFIQQAANEHQFSLDKIIFIGYSNGANIAIQLLLTHPDSYHQ AVLYHPMFPVELTNQPDLTDTSVLLSLGEHDPIVPLPESMRVIQLFQNHGATVQEVWTQS HQLTYQEIKETQTWLAHLSS >gi|307679014|gb|GL456783.1| GENE 362 380096 - 381037 1148 313 aa, chain - ## HITS:1 COG:lin0622 KEGG:ns NR:ns ## COG: lin0622 COG0604 # Protein_GI_number: 16799697 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Listeria innocua # 1 309 1 309 313 448 72.0 1e-126 MKAVVINQYGSKEVLEEAEVTLPELSEHQVLVKEYATSINPIDWKLREGYLKQMFDWSFP IILGWDVAGVITEVGSQVTDWQVGDKVFARPETTRFGTYAEVTIVDDHLLAKIPETISFE EAAAVPLAGLTAWQALFDHGHLKEGENVLIHAGAGGVGTYAIQLAKEAGAHVITTASAKN HALLKKIGADEVIDYHTTNFAEVLADVDLVFDTMGGEVQKNSFAVLKPNTGRLVSIVGIE DKQLAAEKNISAESIWLQPNGEQLQKIADLMAAGKVKSIIGEVFPFSRQGIYDAHALSET HHAVGKIVVQMAE >gi|307679014|gb|GL456783.1| GENE 363 381155 - 382438 1351 427 aa, chain - ## HITS:1 COG:CAC3584 KEGG:ns NR:ns ## COG: CAC3584 COG0577 # Protein_GI_number: 15896818 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Clostridium acetobutylicum # 1 424 1 438 440 119 25.0 1e-26 MKFRDILKSASTNLMRNKGRTVLTIIAIFIGAFTIALTTGVNIGVNDYIDKQVGSVGGAN QLFIQPKMEMNVGNGTEPSKYNPEKKTSTIQQQSMLAEKDIEKIKKISDVTSVEPMKSVA IDYIKGADKHKYVFSATSALDEMTIDLAAGRKVSQTSQDFEINLSPEYVKALGYTSSKAA VGETVQLGISSSLKGQEQVIEAKIVGVRNASVIQNGLSLMNKALIDKVVSINQADLPEHL KNQYAMIIAEVKKDSTPEQIKDIKKDLDKAGYLATTVEDEIGMIRNIINAITGVLTMFGA IALLAASFGIINTLYMSVQERTREIGLMKAMGLSNGKVFTIFSVEAALIGFFGSILGILG AVGVGNLVNRLATDSFLKALTGFKLIQFSLPSSLTIILVIMFIAFLAGTLPARRAAKLDP IESLRYE >gi|307679014|gb|GL456783.1| GENE 364 382439 - 383119 288 226 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 3 202 4 199 223 115 35 3e-24 MAVIEAKNIKKSYGKNETKFDALKGVDLKVEKGESVAIIGKSGSGKSTFMHILALLDQPT SGDIYLNGKNVTSIRKKVLNKTRNEEFGFVFQQFFMNAKDTVLNNVLLPLKIGGISGSKR KKMALDALKAVGLEDKVQNKANNLSGGQKQRVCIARALVNNPQIIFADEPTGNLDSATGK KIEELLFDLNKNKGITLIIVTHDPDLAARCDRQVHVRDGLIVGGDE >gi|307679014|gb|GL456783.1| GENE 365 383312 - 384043 513 243 aa, chain - ## HITS:1 COG:no KEGG:EF1674 NR:ns ## KEGG: EF1674 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 243 1 243 243 350 98.0 4e-95 MKFKTALQYRVIYQVRSLAIYFGFYALFGILFPLIGLLFSNDVNTVSSDAVIPCLVFMGI LSFLGVNTDFKLFIQNGLSRWTIFLVNFVSNAILSLVGSLAVLVLIKVFSGNFISHFQLS MKLIDVYAQGNFFMSWLLFFILLMLSGSLGLLAGVFNDRIDGVKKLIVLLLLLMIPILLG TIAQLGGAPMRLRMLHVLQAMVGYQSTGFTVLPLLLTISCFVGINLGLAYLLNKHREIKR VNA >gi|307679014|gb|GL456783.1| GENE 366 384045 - 384899 805 284 aa, chain - ## HITS:1 COG:BH3493 KEGG:ns NR:ns ## COG: BH3493 COG1131 # Protein_GI_number: 15616055 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Bacillus halodurans # 2 278 4 282 283 171 35.0 1e-42 MSLRVESVSKKYHQKKALDNISITFEKETIYGLLGRNGAGKSTLLNIINNRSFATSGSVQ LAGETVTDNEAALTHIYLMSEDNLFPPQLKIKDIFKTTEGFYGSFDWSLAEQMLSDFGLD GKKTFKKLSTGYRSIAKLIVALSVPCEYIFLDEPVLGLDANHRELFYTYLIETYQERPRT FVISTHLIEEIANLLEDIIIIDQGKLIRAESIETILKNGRIVSGPKEQVERYTQSLEILG MDTLGGAVTAYVYGDLPTEKAEVQIAPLNLQTYFVQLTNRKKEK >gi|307679014|gb|GL456783.1| GENE 367 384896 - 385264 519 122 aa, chain - ## HITS:1 COG:BH3492 KEGG:ns NR:ns ## COG: BH3492 COG1725 # Protein_GI_number: 15616054 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 1 119 1 119 129 113 46.0 8e-26 MEFNFSGEKPLFQQVADQIAEGIFNGAYLEGEQIPSTTEISKSYQINPATVLKGMNLLVE RQLIEKKRGIGMFVLPGAQERVRSARKEEFLNKEVLEVVAEAKKLGITAEQLKQLIERGY DA >gi|307679014|gb|GL456783.1| GENE 368 385413 - 385856 563 147 aa, chain - ## HITS:1 COG:no KEGG:EF1677 NR:ns ## KEGG: EF1677 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 147 1 147 147 169 100.0 4e-41 MIRKTILASSILGVGLLIGACGNQTQTQMNSTNTSESSQPKVTESSRKSSESASNNEGVS SDSSKSTSSTTESEILKGLAEEKTLKEKIPSLNQTTIKKVTDNEYKRILVMEEKATGTTY KSILIKKQNRLKIVNETTDELLYNGTL >gi|307679014|gb|GL456783.1| GENE 369 385977 - 386531 552 184 aa, chain - ## HITS:1 COG:lin1310 KEGG:ns NR:ns ## COG: lin1310 COG0681 # Protein_GI_number: 16800378 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Listeria innocua # 27 182 25 179 180 137 44.0 1e-32 MKKKRDYVGYLMYFLKILVPAIVAVFILRGFFLIPVRVDGHSMQKTLNQGDMIVMEKFSA IKRFDVVVFKTDTGSILIKRVIGLPGEAVRYENDQLYVNNQPIAEPYLTKNRKKDHETMP YTTNFDSKELLMQEKLPKDSYFVLGDNRRMSKDSRSFGAIHADQILGKAQFVYYPLTHMK IIPK >gi|307679014|gb|GL456783.1| GENE 370 386550 - 387983 1705 477 aa, chain - ## HITS:1 COG:lin1965 KEGG:ns NR:ns ## COG: lin1965 COG0793 # Protein_GI_number: 16801031 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protease # Organism: Listeria innocua # 9 470 31 491 496 304 39.0 3e-82 MKNKRTVPFYQYIISLLCVAFLAGGSSYIYFDHRVKKMSQEGAITNADLSKVQDLYNEIS TNYVGEVDKNELVEGALKGMSEAIGDPYSTYLNESAANDLNESLSGDFEGIGATMTMKDG EPVVAEAPVADSPAEKAGIKEGDIIEKVDGTATKGMKLAEVVSKVRGKKGTSVELTIQRE GETKNISIKRGKIPVKTVTGELDKNDAQIGSIKITSFGKKTYQELKETITNLRDKGAKSF VIDVRQNPGGLLDQAERMASMFLKNGETIVQFEDKKGRTMKEVASKELDGGFKVKEPVAV IIDGNSASASEIFAAALHESANVPLIGTKTFGKGTVQTVKDLNDQTEIKLTVLKWLTPKG EWINEKGIEPTIKADYPEYAYLKLIPRDKTLKEGDQSEDIQNLNAILAVLAYPVDENNAN YTAETKAAVSDLQQKNGLPVTGEIDNETATKIEATLGKLILENDAAYDTAVKEIQKN >gi|307679014|gb|GL456783.1| GENE 371 388080 - 388298 303 72 aa, chain - ## HITS:1 COG:lin1971 KEGG:ns NR:ns ## COG: lin1971 COG4479 # Protein_GI_number: 16801037 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 68 1 69 77 72 60.0 2e-13 MRRSFYHYLMTLKGPAKDPETDFANEAAKDIQFPKQTEDYHELSSYLEMNADYLSNMDIF DELWEKYLENNK >gi|307679014|gb|GL456783.1| GENE 372 388304 - 388819 676 171 aa, chain - ## HITS:1 COG:SPy0466 KEGG:ns NR:ns ## COG: SPy0466 COG0225 # Protein_GI_number: 15674584 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptide methionine sulfoxide reductase # Organism: Streptococcus pyogenes M1 GAS # 3 170 2 169 169 243 70.0 1e-64 MEEKAIFAGGCFWCMVQPFDTQPGIISVVSGYTGGHVPNPTYEQVLTHTTGHTEAVEITF DPAIISYEQLVDIYWQQTDPTDAFGQFQDRGDNYRPVIFYRSQEQKEIAEKSKERLANSG RFTEPIVTTIEPAAPFYPAEEYHQDFYKKDALRYGLSHQRRSEFIEEKWSD >gi|307679014|gb|GL456783.1| GENE 373 388836 - 389480 670 214 aa, chain - ## HITS:1 COG:SPy1491 KEGG:ns NR:ns ## COG: SPy1491 COG4698 # Protein_GI_number: 15675395 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 23 209 8 193 195 125 37.0 8e-29 MNEEKPKTSKSIKKTQPTNLKRNPWKIAFLVLVGLVIGSVAFVTFRATQVREPDLKKIPA IVEKEGEPVVTIQSKKQQVNKLIDFYLADFQKGSEIKYKFYLENDALLNGTFQVLGHDIP FYLYFDPYVMANGNVQLKAKSLSIGTLGLPIKEVLKFAKRSYKLPKWVEINPDDQTVLLR LDQFRMQNGLFVRAEKINLVDDDIRMNIYLPKEK >gi|307679014|gb|GL456783.1| GENE 374 389482 - 390381 943 299 aa, chain - ## HITS:1 COG:SPy1492 KEGG:ns NR:ns ## COG: SPy1492 COG2755 # Protein_GI_number: 15675396 # Func_class: E Amino acid transport and metabolism # Function: Lysophospholipase L1 and related esterases # Organism: Streptococcus pyogenes M1 GAS # 23 280 27 273 286 257 49.0 1e-68 MKKQTQHILLTVLTPILIALGVFALLSVAIPKAKPLLKQEKVATTAQKNQKEVIHYTAIG DSLTEGIGDLTNSGGFVPIVADDLKEHYNLNGVQTDNFGKNGDRSDQILKRIKEKPEIQK GLASADVITLTVGGNDLMKVISSNIFDLKVSSFNRPQKAYQRRVRRLLEEIREYNEKAPI YVLGIYNPFYLNFSEITEMQEIVDNWNQATEEMVQEQKRAYFIPINDLLYKGRGDEVGVT GGDSETTGSSASKEDLNNLLYEEDRFHPNNLGYQIMAGAVRDEMVKTEKEWITKSEGSE >gi|307679014|gb|GL456783.1| GENE 375 390485 - 391327 1056 280 aa, chain - ## HITS:1 COG:SP1112 KEGG:ns NR:ns ## COG: SP1112 COG1307 # Protein_GI_number: 15900979 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 276 1 274 279 285 53.0 1e-76 MTNVKIVTDSSCTMEKSLRDELNIHMMPLSIMVDGVVYPDDDHLPGEKFMDMMANAKALP KTSQPPIGEFVELYDRLGEDGSEVISIHMTKGLSGTVEAARQASNLSSSKVTVIDSDFTD QGLSFQVIQAAKLAQAGAGVPEILAEIERVKQNTKLYIGISTLDNLVKGGRISRTTGLLS NIFNMKVVMDFENTELIPVAKGRGVKTFNKWFDELKSELSKIPNVRQIGISHADGLELAN GFKEGLQAIFKDMDIPVLHTNPVIATHTGKNAFAIMYYTD >gi|307679014|gb|GL456783.1| GENE 376 391459 - 392112 730 217 aa, chain + ## HITS:1 COG:L97827 KEGG:ns NR:ns ## COG: L97827 COG1272 # Protein_GI_number: 15672479 # Func_class: R General function prediction only # Function: Predicted membrane protein, hemolysin III homolog # Organism: Lactococcus lactis # 1 216 1 215 217 194 54.0 9e-50 MEKTHFSKKYLIVNEVLNAVTHGIGAGLSIAGLVILLVKGARLGSPIHVVSYAIYGSMLI LLFLSSTLFHSLIFTRAKKVFQVFDHSSIFLLIAGSYTPFCLISIGGWLGWTLFSLVWLI AIVGIVYKSLTLHKQETVKNISTIIYIVLGWLCIIAARPLYESLGFTGTALLVAGGVSYT LGAAFYSLKNVRFMHVVWHLFVMLAAILMYFSVLFYT >gi|307679014|gb|GL456783.1| GENE 377 392306 - 392503 207 65 aa, chain + ## HITS:1 COG:no KEGG:EF1686 NR:ns ## KEGG: EF1686 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 65 1 65 65 103 100.0 3e-21 MEAIRRVGFLFFVLVIGIFLGTLGLRLAFMIVTPLFILWFMSWDEKRYTRTRKQQQARYV YRKFP >gi|307679014|gb|GL456783.1| GENE 378 392609 - 393121 815 170 aa, chain - ## HITS:1 COG:L22735 KEGG:ns NR:ns ## COG: L22735 COG0503 # Protein_GI_number: 15672615 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Lactococcus lactis # 1 170 16 185 185 253 72.0 1e-67 MDLRDYIASIPDYPEKGIVFRDISPLMANGDAYREATKQIVDYAKEKRIDMVVGPEARGF IVGCPVAYELGVGFAPVRKKGKLPRETIEVTYDLEYGSDTLTLHKDAITPGQRVLICDDL LATGGTIKATIELVEQLGGIVVGCAFLIELMDLHGRDKIDGYDIVTLMEY >gi|307679014|gb|GL456783.1| GENE 379 393124 - 395436 2212 770 aa, chain - ## HITS:1 COG:L0259_1 KEGG:ns NR:ns ## COG: L0259_1 COG0608 # Protein_GI_number: 15672614 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-specific exonuclease # Organism: Lactococcus lactis # 1 557 1 554 558 538 49.0 1e-152 MKKSNYQWQLQTKTELPVEFIEQLKKEEINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY DPFLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNR FVHGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAISYAMAQGVDVIVTDHHELPEQLPE AYAIVHPRHPQGAYPFGDLAGVGVAFKVATALLGELPIELLDLVAIGTIADLVSLTDENR TFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRLGEAAPGVEL MTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLIDPNAPVHILAKQGWHEGVLGIV AGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVREQFTHFGGHHMAAGMT LPVENIPFVQEHLVHFIEKNQIDMANGQELLISESLAVSQATTAFIDQLRILAPFGTDNT VPTFVFKEITPTQIRQIGADNAHLKFQMNQEGAQLDAIAFQMGPQADELAQGTADVAGQL SINEWNGRKKPQLMVTDFAVSGRQLFDFRGKNNQTKPIPSEATAYLLFDEKNQKFISDPT ANIIVWSNQEELVEAVSQNQIEQLVFVDCPVEAITVKEIVEATEIQRIYMMFISPEEAYL NGMASREQFATLYKFILQQKEVNLRSQLSKVANYLNIQEKLLIFMIQVFFDLGFVTIESG VLNSIEKPDNRPLTESQVYQQRLKKIKTEEFLLYSDCQTIQQWLWNEEDK >gi|307679014|gb|GL456783.1| GENE 380 395591 - 396058 683 155 aa, chain - ## HITS:1 COG:BS_yrvD KEGG:ns NR:ns ## COG: BS_yrvD COG5416 # Protein_GI_number: 16079817 # Func_class: S Function unknown # Function: Uncharacterized integral membrane protein # Organism: Bacillus subtilis # 1 77 1 77 107 62 40.0 3e-10 MKNQWRVILGLVLVLIVVIFAVLNNQAVPVNFGFTKISGPLILIILGSAIIGALVGLLTS TTTIWNQRKELKAVQKELDIYKNDMDKLVKEETEKVQRSFDNQLADLQAKQAAAPQVAEP VVNEQTSNTEVDATPVSGSRIDRYVKPRVNEEEQK >gi|307679014|gb|GL456783.1| GENE 381 396075 - 396863 994 262 aa, chain - ## HITS:1 COG:SP0675 KEGG:ns NR:ns ## COG: SP0675 COG0300 # Protein_GI_number: 15900576 # Func_class: R General function prediction only # Function: Short-chain dehydrogenases of various substrate specificities # Organism: Streptococcus pneumoniae TIGR4 # 8 262 4 251 251 233 45.0 2e-61 MDLTNKVVVVTGGSAGLGEQICYEAAKQGAVVVVCARRINLIGKVREQCAVLSGREAFSY QLDIADPESVERVVEAISAEVGPIDVLVNNAGFGLFENFVEIDLAVARQMFDVNVLGMMT FTQKVAIKMIEAGQGHIINVASMAGKMATAKSTVYSATKFAVLGFSNALRLELKPLGVAV TTVNPGPIQTEFFDKADPTGTYLAAVDKIVLDPTKLAKEVVGSMGTSRREINRPFVMEAA ARFYTLFPHLGDFIAGNILNKK >gi|307679014|gb|GL456783.1| GENE 382 396864 - 397805 1035 313 aa, chain - ## HITS:1 COG:L18686 KEGG:ns NR:ns ## COG: L18686 COG1234 # Protein_GI_number: 15672612 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Lactococcus lactis # 1 299 1 300 307 343 58.0 3e-94 MEIQFLGTGAGVPAKHRNVTGIALKLLDERNAVWLFDCGEGTQLQILKSSIRPRKIEKIF ITHLHGDHIFGLPGLLSSRSFQGGTEPLEIYGPVGIADFVKTSLRVSQSRLSYPLKFIEL TKENDVIFKDKQFTVRCNILDHGITSFGYRIEEAAHEGELQVEKLQALGIPSGPLYGKLK RGETIVFDGQEINGQAFVGERKPGRIVTILGDTRKTKNSVTLAQRADVLVHESTFNKHEA KMAKAYFHSTSQQAAEVAKEAQVKQLILTHISARYLTKEAYQLQEEAQEIFPNTKIVKDM DIIEIPFANEGGA >gi|307679014|gb|GL456783.1| GENE 383 398020 - 398586 576 188 aa, chain - ## HITS:1 COG:no KEGG:EF1692 NR:ns ## KEGG: EF1692 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 188 1 188 188 330 100.0 3e-89 MAKRIIIMNFDIESKSYQAFSEIKKMQAERQLKGEQMAVVTHVNDGQHQFKINDFIDFTG NNHTSKDSMIGMLVGILGGPLGILFGWFAGSMYGASKDAKEIQEAQTVFEHVIQKIDEGQ TGLLLIAEEEDNRPLNQLVMFDLGGEITRLDLEEVQQEINDANEVANEAKQSWQAKKEQH KEATSKEE >gi|307679014|gb|GL456783.1| GENE 384 398707 - 398952 372 81 aa, chain - ## HITS:1 COG:L9737 KEGG:ns NR:ns ## COG: L9737 COG1837 # Protein_GI_number: 15673550 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein (contains KH domain) # Organism: Lactococcus lactis # 3 75 4 75 79 83 65.0 8e-17 MADVKELILTIVRPLVSQPEAVSLEIEESTDFLEYNLTVAKEDIGRIIGKQGRVAKAIRT IVYSVRIDGPKKVRLNILDGK >gi|307679014|gb|GL456783.1| GENE 385 398964 - 399257 493 97 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227518885|ref|ZP_03948934.1| ribosomal protein S16 [Enterococcus faecalis TX0104] # 1 97 1 97 97 194 100 5e-48 MEVYLIMAVKIRLKRMGSKKSPFYRIVVADSRSPRDGRFIETVGTYNPLKDPAEVVLKED LVLDWLSKGAQPSDTVRNILSKEGVMKKHHEAKNVKK >gi|307679014|gb|GL456783.1| GENE 386 399386 - 400189 733 267 aa, chain - ## HITS:1 COG:no KEGG:EF1695 NR:ns ## KEGG: EF1695 # Name: not_defined # Def: acetyltransferase # Organism: E.faecalis # Pathway: not_defined # 27 267 1 241 241 445 100.0 1e-124 MNKKINWRRQLTPLEKQTLTELKNKEMIKQGTFYKLEQTFPEESAYTYYGLYRKEQTIQA YIVGYCFDGETLEATIVAPNVGPFFEELVQELEKQAALWGMKEVFLVMDDKQSVGLNYFN RQGIVPAFSEQYLVFQRETYSQALAKLTLLRPQVADLDSLARLLEGTPLPEDLQRTLIYK ENNQLLATLRLDHFENEWGIYGFVVTKTQRGRGLGRQVLQSALRMILENSASATIFLEVE TENQAALHLYQTEGFQVRNQYNYYQIL >gi|307679014|gb|GL456783.1| GENE 387 400331 - 400885 734 184 aa, chain + ## HITS:1 COG:NMB1796 KEGG:ns NR:ns ## COG: NMB1796 COG0431 # Protein_GI_number: 15677635 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Neisseria meningitidis MC58 # 1 181 3 187 190 157 42.0 2e-38 MTKKIGIFVGSLRKDSFNKLVAKTMADLFPADFEPVFINIGDLELYNQDLDDEGTPTEAW TTFREEVKQVDGVMFVTPEYNRSVPAVLKNALDVGSRPYGESVWDKKPGLVVSVSPGAIS GFGANHHLRQSLVFLNVPTLQQPEAYIGGITNLIGEDGKIIDGTVGFLQSIVDAYVDFFN RLTA >gi|307679014|gb|GL456783.1| GENE 388 401006 - 401758 796 250 aa, chain + ## HITS:1 COG:BH0408 KEGG:ns NR:ns ## COG: BH0408 COG0789 # Protein_GI_number: 15612971 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 1 239 1 234 255 154 40.0 1e-37 MEYTIKKMASLSGVSARTLRYYDEIGLLQPARINSSGYRIYGQAEVNRLQQILFYRELDL KLDEIKEILEQPDFNVEQALYEHQQKLLEKRNEIDRLLASVQQTLHHYKGEINMSDQQKF EAFKQQKVQENEEKYGKEIREKYGNETIEQANKKYLNLTEKDMQAMQNVEKDLFSKLAMY QKSPKLTSQLAQEIFQLHKDWLMYSWSSYSPEAHKGLGLMYVGDERFTSYYEQHGAGFAE ALNAIIQNYA >gi|307679014|gb|GL456783.1| GENE 389 401833 - 403251 2024 472 aa, chain - ## HITS:1 COG:SP1287 KEGG:ns NR:ns ## COG: SP1287 COG0541 # Protein_GI_number: 15901147 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Streptococcus pneumoniae TIGR4 # 1 463 1 510 523 588 64.0 1e-168 MAFESLTNRLQQAMSKIRRKGKVSEADVKEMMREIRLALLEADVNLQVVKDFTKRVRERA VGVEVLESLSPAQQIVKIVDEELTKTLGSETVELNKSPKIPTVIMMTGLQGAGKTTFTGK LAKHLMKTENARPLLIAGDVYRPAAIDQLKVLGQQLEVPVFDMGTDANPVEIVRQGLALA KEKKNDYVLIDTAGRLHIDEALMDELKQIKELTNPNEILLVVDAMTGQDAVNVADSFNEQ LGITGVVITKMDGDTRGGAALSIRAVTGAPIKFVGSGEKLTDLEIFHPDRMSSRILGMGD MLTLIEKAQQDYDEKKAEELAQKMKENSFDFNDFIEQLDQVMGMGPIEDLLKMIPGMSNM PGIENVKVDPKDVARKRAMVLSMTPAERENPDLLNPSRRRRIAAGSGNSVVEVNRMIKQF KESKKMMQQMSKGDMNIPGMDQMLGGGVKGKLGKMAMNRMMKKNKKKKKKKR >gi|307679014|gb|GL456783.1| GENE 390 403256 - 403594 463 112 aa, chain - ## HITS:1 COG:SP1288 KEGG:ns NR:ns ## COG: SP1288 COG2739 # Protein_GI_number: 15901148 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 111 1 107 110 107 66.0 5e-24 MEMEKTNRMNALFEFYSTLLTEKQMNYMELYYADDFSLGEIAEEYEVSRQAVYDNIKRTE KILEEYEKKLHLYSNYVVRKEYLEQLQQYVQETYPKDSEIKKYIEQIQEIEE >gi|307679014|gb|GL456783.1| GENE 391 403678 - 404142 511 154 aa, chain - ## HITS:1 COG:lin2433 KEGG:ns NR:ns ## COG: lin2433 COG1683 # Protein_GI_number: 16801495 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 146 1 146 147 156 56.0 1e-38 MIGISSCLGGICCRYDGKSQEQEALKQLVTNGKAIMICPEVLGELPIPRPPAEIIGGDGF DVWANTAYVYTDNGEDVTEAFKAGAQRAYQKLKTQQITTLILKEKSPSCGSQLIYDGQFS GIKKAGVGVATAYFIQQGMTVYSEETWQLADISF >gi|307679014|gb|GL456783.1| GENE 392 404305 - 405015 838 236 aa, chain + ## HITS:1 COG:BH3157 KEGG:ns NR:ns ## COG: BH3157 COG0745 # Protein_GI_number: 15615719 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus halodurans # 2 235 3 236 239 270 54.0 2e-72 MKKVLVVDDEPSILTLLTFNLEKEGYQVTTSEDGKNGFELALSNQYDFIILDVMLPGMDG LEITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRRL KPTTTETLQEDTPKAPLVIGEIRVDEQNYEVFVRNQPIELTPKEFELLVYFMKRKDRVIN RETLLERIWQYDFAGQSRIVDVHISHLRDKIEPDPKRPVYLVTVRGFGYRFQEPKR >gi|307679014|gb|GL456783.1| GENE 393 405012 - 406787 1611 591 aa, chain + ## HITS:1 COG:lin2643 KEGG:ns NR:ns ## COG: lin2643 COG0642 # Protein_GI_number: 16801705 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 10 585 16 588 591 256 30.0 7e-68 MKKRLRIEYFLVAAVMLLLFVGSIAATNFFFQKEMVAQQETYLRRKNTLLTDQLPPSVFE KGQLTNQQQLLVTHALDDAEERVTLLQKNGTVFFDSSQNEPLESHKKRPEIAAVLSGATY GSALRKSKTLNKELLYVATPVLKSGEIVGIIRISEQTALFSKNIQSFRRYIIFTFGILFL LITLFIFLLLRQKNQPLVTVLPILKRMLKHPDENRSIIQQSSEWNELYETINLLSQQVSQ TYKAYTSADEQFHELLDELMIGVFIIDTQGRLRLLNPKMQEMLGLSAKNMQSNYLEVIQD ADLIHLIHQVVAEKNSLHQEITVTQGPTPLRLDLSLRYLDDQSANDYQVLGIAYDLTRVR QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPKVLDQFLHIMQKDAQRLQQLI QEILELSRGSATIPYAEQEITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL FYPIVKNLIENAIQYSQKNGQITISYAIENQQLRLSVQDTGIGISQKDQERIFERFYRVD KARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLPLTKKEA >gi|307679014|gb|GL456783.1| GENE 394 406829 - 407719 1238 296 aa, chain - ## HITS:1 COG:lin2642 KEGG:ns NR:ns ## COG: lin2642 COG0226 # Protein_GI_number: 16801704 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Listeria innocua # 1 295 1 300 302 360 65.0 2e-99 MKKRVIAATMLSLGLLLTGCGAQGGTTEKSSEADSNKPVKIVAVGSTALQPLVDAAKDQF TQEHPNYTVSVQGGGSGTGLSQVADGAVTIGNSDVFAEEKDGVDASKLVDHRVAVVGMGP VVNKEVGVKNLTKQQLIDVFTGKVKNWKEVGGKDQEIVVINRANGSGTRATFEKWGLDGA KPVQSQEQDSSGTVRKIVEQTPGAISYLAFSYMDDSTVALSIDGVEPKEEHVKDNSWKIW SYEHMYTKGEPNKEVKAFLDYMVTDDVQKTIVKDLGYLAITDMQVERDVNGKVTEK >gi|307679014|gb|GL456783.1| GENE 395 407830 - 409008 1553 392 aa, chain - ## HITS:1 COG:SP0035 KEGG:ns NR:ns ## COG: SP0035 COG0436 # Protein_GI_number: 15899981 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 385 1 386 389 514 66.0 1e-145 MDLTNRFNRQVNKIAVSLIRQFDEQVSGIEGILKLTLGEPDFNTPEHVKKAAKEAIDANF SHYTGMSGLLDVREAAAYFMKEKYHLTYQPGTEILVTVGATEAISASLLAILEQGDKVLL PAPIYPGYEPIITLAGAEPVYLDTRDNDFVLTPEMIEAAMAEHGEQVKAIILNYPSNPTG VTYNRQELQAIADVLKKYDIFVISDEIYSELTYDESHVSIAEMLRDQTILINGLSKSHAM TGWRIGFIFAPAILTAEIIKVHQYLVTAAATVSQKAAVRALIEGMHDAEIMKEEYRKRRD FVYEQMTQLGFEVARPNGAFYIFAKIPTGYEQDSMKFCIDLAQKEAVALIPGISFGPEAE GYVRISYASDMDKLTTAMERIAHYMATQRVTR >gi|307679014|gb|GL456783.1| GENE 396 409170 - 411860 3043 896 aa, chain - ## HITS:1 COG:L130682 KEGG:ns NR:ns ## COG: L130682 COG0383 # Protein_GI_number: 15673480 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-mannosidase # Organism: Lactococcus lactis # 1 891 1 891 899 1084 60.0 0 MTKKKVYIVSHSHWDREWYLPYEEHHMRLIELVDNVLDLIENDPEFNSFHLDGQTIILDD YLQVRPEKKEAVKKAVQAGKLKIGPFYILQDDFLISSESNVRNMLIGHLESQKWGAPVQL GYFPDTFGNMGQTPQMMQLANLPAAAFGRGVKPIGFDNQVLESDYSSQYSEMWWEGPDQT KIFGLLFANWYSNGNEIPSEKEAAIAFWKQKLADVERYASTNHLLMMNGVDHQPVQRDIT KAIALANELFPEYEFIHSNFDDYLKAVQEELPEDLGTVTGELTSQETDGWYTLANTSSAR VYLKQWNTKVQRQLENIAEPLAAMAYEVTGDYPHDQFDYAWKTLLQNHPHDSICGCSVDE VHRGMMTRFENANDVGHFLADEATRQLTEAIDTSVFPEKAHPFVLFNTSGYQKTEVVTVE VEIERLPFYTGKPEDLYHELKQKATPDYQVIDPTGKAVASRIVKEDVHFGYDLPKDAFRQ PYMAKYLTVELSVKEMAPFSWDSFALIQGETKAFEGSLLAQPAINEMENEFIQVKIENNG SLTIADKKTGETFSKLLTFEDTGDIGNEYIFFKPTEDQGITTENVTAEITNKENSPVKAS YQIKQTVMLPVSADERLEEEQKAVREFRERQAQRSTTLRPFEITTAVTMIKESNQLFFET TINNQIKDHRLRVLFPTGMVTETHEADSIYEVVTRPNQVSDTWENPTNPQHQQAFVNVHD QNKGVTIFNEGLNEYEVLADGTIAVTLIRCVGELGDWGYFATPEAQCQGEYTFKYGLSLH GKPEERFATYQQAYSAQIPFTAATTARHEGKLAPNHVYLTTAEGPIGWTAVKRQEQTNHL VVRGFNLTAQNIPCELHKETQPATCLTNVLEEPLTPAIEIDAPLRPFEIRTWRFEK >gi|307679014|gb|GL456783.1| GENE 397 411872 - 413161 1568 429 aa, chain - ## HITS:1 COG:L133416 KEGG:ns NR:ns ## COG: L133416 COG3538 # Protein_GI_number: 15673481 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 6 429 5 431 431 649 71.0 0 MVYTEVPKSVATFMETITEKCGEAHQDWAKNFQAAFANTLLTTVKRQEDGTTFLLTGDIP AMWLRDSTAQVRPYLVIAKEDEDLAQMIAGLVKRQFRYICIDPYANAFNETDNHAGHQTD KTEMNGWIWERKYEIDSLCYPVQLAYLLYKNTGMTEQFNSDFVEGVKKILNVFTTEQDHA QSPYLFERDTWRQEDTLVEAGKGTPVGKTGMTWSGFRPSDDACQYGYLVPSNMFAVVILG YIQEIFSDVLEDATIVAIAKKLQEEIEEGIQTFGRTKNQNNETIYAYEVDGLGNASVMDD SNVPNLVAAPYLGYCSTEDEQYLTTRQTLLSKENPYFYEGKYAKGIGSSHTPENYVWPIA LAMEGMTTKDKAEKERILDLLVATDAGTHLMHEGFDVDNPENYTREWFSWANMMFCELVM DYFDIRVEK >gi|307679014|gb|GL456783.1| GENE 398 413318 - 414364 982 348 aa, chain + ## HITS:1 COG:L0146 KEGG:ns NR:ns ## COG: L0146 COG1609 # Protein_GI_number: 15673482 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 1 342 1 340 345 298 45.0 1e-80 MKQPLYQQIIDYLQNEIDSGRLPVGAQVPTEKELSAQFNVSRITSKRALTELETQGVIQR HQGKGSFVQAPKHPLHTSLNKVLFLLPFADDLSVGNFYSGLAPTIQAAGLEVFMTSPNFL REKNAADIVNEFAGLVYYAATSNDYLDLLFELALMNFPVVVLDKKIHDLPFATIQSDNFA GGKTATERLIGLGHTKIGYILSGSPALQSVRQRYLGYLQALKEANLAFHTAITETNLLDE HNFKQYFEAHQLTAVVCDNDFSALHCLRNCKNLGIHVPKELSIIGFDDIQAAAFVEPPLT TMAQDFKEMGKLAGEVLLQTMQQDIQIIEDIQVPVTLIERETISTVSK >gi|307679014|gb|GL456783.1| GENE 399 414553 - 415482 1031 309 aa, chain - ## HITS:1 COG:SPy0824 KEGG:ns NR:ns ## COG: SPy0824 COG0583 # Protein_GI_number: 15674863 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 1 298 1 298 304 229 40.0 6e-60 MNIQQMKYVAAIANNGSFREAAKKLFITQPSLSNSIRELEEELGISLFLRTNKGAFLTEE GMVFLEQAEKVLVQMELLENRYRETVTSERFSISSQHYDFLGEVIAKVLKKYGDQYKDFR VFETTTLKVIEDVKGFHSELGIIYLNEQNSVSIERYLEQANLAYEVISTFNTHIFLGNHH PLAKQKEIHLEELVPYPQVRFNQEGSNFSYFSEDLVEIPEQESVIHTTDRGTLMNLLVET NAYASGSGVVTGFTKKEIRLVPLAPALENRICLLFPRNREISPIGRYFIKELKALFKKEV DTKTFSTKE >gi|307679014|gb|GL456783.1| GENE 400 415501 - 416199 485 232 aa, chain - ## HITS:1 COG:BH0360 KEGG:ns NR:ns ## COG: BH0360 COG3338 # Protein_GI_number: 15612923 # Func_class: P Inorganic ion transport and metabolism # Function: Carbonic anhydrase # Organism: Bacillus halodurans # 8 228 47 270 275 126 34.0 3e-29 MKKIKNMDVEWSYTGNDGPEHWHTLCDWFAEGAKFAYQSPIALEKESAETVNSQITFHYK KEEFTEKEFKNTLHFVPPNTESYVMFENVAYHLTDIHFHMPSEHLLSGKQYPLEFHLVHM NDAGENLVVGCLFTITEEENRFSEANHPMDWENGTHQQWFNPSIFLPEERLHYHYVGSLT TPPTKGPVKWFVFDTIQKMDQAFLNKIKEGMLAFNNRPLQPLNGRKIYFSND >gi|307679014|gb|GL456783.1| GENE 401 416397 - 417029 948 210 aa, chain - ## HITS:1 COG:lin1945 KEGG:ns NR:ns ## COG: lin1945 COG0461 # Protein_GI_number: 16801011 # Func_class: F Nucleotide transport and metabolism # Function: Orotate phosphoribosyltransferase # Organism: Listeria innocua # 4 210 3 209 209 272 66.0 3e-73 MTKVAKKIAKDLLDIEAVFLNPNEPFTWASGIKSPIYCDNRITMSYPAVRKEIAEGLAAK IKETFPEVEVIAGTATAGIPHAAWVADILGLPMVYIRSKAKDHGKGNQIEGRISEGQKMV VIEDLISTGGSVLEAAEAAEREGATVLGVAAIFTYELPKGTANFADKQMTLLTLTNYSTL IDAALEANYIEEKDVTLLQEWKKDPENWGK >gi|307679014|gb|GL456783.1| GENE 402 417031 - 417744 893 237 aa, chain - ## HITS:1 COG:L181692 KEGG:ns NR:ns ## COG: L181692 COG0284 # Protein_GI_number: 15673327 # Func_class: F Nucleotide transport and metabolism # Function: Orotidine-5'-phosphate decarboxylase # Organism: Lactococcus lactis # 3 235 4 236 237 284 62.0 9e-77 MHDRPIIALDFPTQKEVAVFLEKFPKEEALFVKVGMELFYAEGPAIVRWLKEQGHDVFLD LKLHDIPNTVEKAMTNLAKLGVAITNVHAAGGVRMMQAAKEGLIKGTQPGAKVPELIAVT QLTSTSEEEMHHDQLINVPLETSVIHYAKCAEKAGLDGVVCSALEARGIQEATKQTFICL TPGIRPAGSAVGDQQRVVTPQHAREIGSTYIVVGRPITQAENPYEAYQEIKKDWSGK >gi|307679014|gb|GL456783.1| GENE 403 417734 - 418672 1029 312 aa, chain - ## HITS:1 COG:L182555 KEGG:ns NR:ns ## COG: L182555 COG0167 # Protein_GI_number: 15673328 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Lactococcus lactis # 4 309 5 311 311 439 73.0 1e-123 MMKNPLAVSIPGLTLKNPIIPASGCFGFGEEYANYYDLDQLGSIMIKATTPQARYGNPTP RVAETPSGMLNAIGLQNPGLDVVMQEKLPKLEKYPNLPIIANVAGACEEDYVAVCAKIGQ APNVKAIELNISCPNVKHGGIAFGTDPEVAFQLTQAVKKVASVPIYVKLSPNVTDIVPIA QAIEAGGADGFSMINTLLGMRIDLKTRKPILANQTGGLSGPAIKPVAIRLIRQVASVSQL PIIGMGGVQTVDDVLEMFMAGASAVGGGTANFTDPYICPKLIDGLPKRMEELGIESLEQL IKEVREGQQNAR >gi|307679014|gb|GL456783.1| GENE 404 418669 - 419460 841 263 aa, chain - ## HITS:1 COG:lin1948 KEGG:ns NR:ns ## COG: lin1948 COG0543 # Protein_GI_number: 16801014 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases # Organism: Listeria innocua # 5 263 3 254 254 262 49.0 4e-70 MQRKQEMMTIVAQKQLAPRIYQLDLQGELVKDMTRPGQFVHIKVPRADLLLRRPISINQI DHSNETCRLIYRVEGAGTEVFATMKAGEQLDILGPLGNGFDITTVAAGQTAFIVGGGIGI PPLYELSKQLNEKGVKVIHFLGYASKEVAYYQQEFMALGETHFATDDGSFGAHGNVGRLL SEALAKGRIPDAVYACGANGMLKAIDSLFPTHPHVYLSLEERMACGIGACYACVCHKKGD TTGAKSVKVCDEGPIFKASEVIL >gi|307679014|gb|GL456783.1| GENE 405 419568 - 422750 3687 1060 aa, chain - ## HITS:1 COG:SP1275 KEGG:ns NR:ns ## COG: SP1275 COG0458 # Protein_GI_number: 15901135 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Streptococcus pneumoniae TIGR4 # 1 1060 1 1058 1058 1682 80.0 0 MPKRTDIKKIMVIGSGPIIIGQAAEFDYAGTQACLALKEEGYEVVLVNSNPATIMTDKEI ADHVYIEPITLEFVSRILRKERPDALLPTLGGQTGLNMAMELSESGILDELNVELLGTKL SAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQAVAFAKRIGYPIIVRPAFTLGGTGGG MCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKEIEYEVMRDSADNAIVVCNMENFDPV GIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIRALKIEGGCNVQLALDPHSFNYYVIEVN PRVSRSSALASKATGYPIAKLAAKIAVGLTLDEMKNPVTGTTYAEFEPALDYVVSKIPRW PFDKFEKGARELGTQMKATGEVMAIGRNIEESLLKAVRSLEIGAYHNELAELSHVSDLEL TKKMVHAQDDRLFYLSEAIRRGYSIEELQSLTKIDLFFLDKLLHIIEIETTLESHVDNVA VLKEAKQNGFSDRKIAALWGQTEQAIADFRRANQIVPVYKMVDTCAAEFESHTPYFYSTY EVENESNVSKKPSVLVLGSGPIRIGQGVEFDYATVHSVKAIQAAGYEAIIMNSNPETVST DFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQTAINLAEPLTKQGVKILGTTIED LDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPSYVLGGRAMEIV ENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGIMEHIERAGVHS GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHENRVYVIEVNPRASRT VPFLSKITGIPMAQVATKAILGEKLTDLGYQDGLYPESKQVHVKAPVFSFTKLQKVDTYL GPEMKSTGEVMGSDYYLEKALYKAFEASGLHLPSYGAVLFTIADETKEEALEIAKRFSAI GYSLVATEGTADFLAKHQLPVKKVTKISNPEGETVLDVIRNGNAQVVINTMDKNRSSANQ DGFSIRREAVEHGIPLFTSLDTANAILKVLESRAFTTEAI >gi|307679014|gb|GL456783.1| GENE 406 422750 - 423829 1033 359 aa, chain - ## HITS:1 COG:SPy0833 KEGG:ns NR:ns ## COG: SPy0833 COG0505 # Protein_GI_number: 15674869 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Streptococcus pyogenes M1 GAS # 2 356 3 356 360 566 70.0 1e-161 MKRLLILEDGTVFEGKAFGAEGNVVGEVVFTTGMTGYQEAITDQSFNGQMITFTYPLVGN YGVNRDDYESIAPTCKGVIVKEHARVASNWRQQMTLDEFLKRKGIPGISGIDTRALTRKL RSAGTMKGSIIDAVDDLPHAFDQLKATVMPKNQVAQVSTTKPYPSPGIGRNVVVVDFGLK HSILRELSKRQCNLTVLPYNTTAEEILELSPDGVMLTNGPGDPKDVPEAIEMIQAIQGKV PIFGICLGHQLFSLANGADTYKMKFGHRGLNHPVREIATGRIDFTSQNHGYAVDEATIDP EKLLVTHVEVNDGTVEGVRHRDYPAFTVQYHPDAAPGPHDGLHLFDEFMELMDAWKEQN >gi|307679014|gb|GL456783.1| GENE 407 423832 - 425115 1575 427 aa, chain - ## HITS:1 COG:BH2538 KEGG:ns NR:ns ## COG: BH2538 COG0044 # Protein_GI_number: 15615101 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Bacillus halodurans # 1 425 1 424 428 483 59.0 1e-136 MKTLIKNGKIIKKENQLIEAALWLENGVIHAIGESFDEADFEQVFDANGQLITPGLVDVH VHFREPGFTYKETIKTGSKAAARGGFTTVCAMPNLNPVPDTAEKLSEVYDLIQKDAVVKV LQYAPITEELRSEVLTNQKALKEAGAFAFTNDGVGVQTAGTMYLAMKEAAALNMALVAHT EDESLLFGGVMHEGEVSKKLGLPGILSATEASQIARDITLAKETGVHYHVCHVSTEESVR VIRDAKKAGIHVTAEVSPHHLILVDEDIPGDEGFWKMNPPLRGLADRQALIDGLLDGTID CIATDHAPHGLEEKQQSFLNAPFGIVGSETAFQLIYTNFVETGIFTLEQVIDWMAVKPAE IFGLNAGTLTIGAPADIAVFDLATAAPIDAEAFESMAVNTPFTGWTVKGKTLMTFVDGAL AWSEEAQ >gi|307679014|gb|GL456783.1| GENE 408 425124 - 426050 1034 308 aa, chain - ## HITS:1 COG:SPy0832 KEGG:ns NR:ns ## COG: SPy0832 COG0540 # Protein_GI_number: 15674868 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, catalytic chain # Organism: Streptococcus pyogenes M1 GAS # 1 307 1 307 311 424 65.0 1e-118 MIITSERISLKHLLTAEALTDREVMGLIRRAGEFKQGAKWHPEERQYFATNLFFENSTRT HKSFEVAEKKLGLEVIEFEASRSSVQKGETLYDTVLTMSAIGVDVAVIRHGKENYYDELI QSKTIQCSIINGGDGSGQHPTQCLLDLMTIYEEFGGFEGLKVAIVGDITHSRVAKSNMQL LNRLGAEIYFSGPEEWYDHQFDVYGQYVPLDEIVEKVDVMMLLRVQHERHDGKESFSKEG YHLEYGLTNERATRLQKHAIIMHPAPVNRDVELADELVESLQSRIVAQMSNGVFMRMAIL EAILHGKA >gi|307679014|gb|GL456783.1| GENE 409 426064 - 427344 1065 426 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 13 426 5 427 447 414 48 1e-114 MSEKEFRNEDAVLDIKDRPQAFHWVGLSLQHLFTMFGATVLVPILVGIDPGIALVSSGLG TMVYLITTKGKIPAYLGSSFAFIAAMQMLMKSDGYPAIAQGAMTTGLVYLIVSLIIKKIG SDWLDKILPPIVVGPVVMVIGLGLAANAANNAMYNNNVYDFKYIAVALITLGLTIFYNMF FKGFLGLIPILLGIVSGYLVALAFGIIDLTPIKEAAWFALPNFEVPFVQYEPKLYLNAIT TMAPIAFVTMTEHIGHLMVLNKLTKRNFFQDPGLSKTLMGDGLAQIVAGFVGGPPVTSYG ENIGVLAITRVHSVFVIGGATVFAVALGFVGKLSALILSIPGPVISGISFVLFGVIAASG LKILIDNKINFDKKKNLLIASVILVIGIGGLVFKVGTFELSSMALATVLGIVLNLILPEN ARSEEQ >gi|307679014|gb|GL456783.1| GENE 410 427361 - 427897 918 178 aa, chain - ## HITS:1 COG:BH2541 KEGG:ns NR:ns ## COG: BH2541 COG2065 # Protein_GI_number: 15615104 # Func_class: F Nucleotide transport and metabolism # Function: Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase # Organism: Bacillus halodurans # 6 175 5 177 180 199 63.0 2e-51 MPKKEVVDAVTMKRALTRISYEIIERNKGIQDIVLVGIKTRGIYIAQRLAERLKQLEDID VPVGELDITLYRDDVKDMEEPELHSSDVPVSIEGKEVILVDDVLYTGRTIRAAMDAVMDL GRPRKISLAVLVDRGHRELPIRADYVGKNIPTSKTEEIIVEMEERDGADRIMISKGNE >gi|307679014|gb|GL456783.1| GENE 411 428239 - 429144 350 301 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 37 285 38 279 285 139 35 2e-31 MEQINVTIQTEKGRIDKVLSEHLPNHSRSQIQQWLKEKHVTVNGETVRANYKVTAGDEIV VTIPEPEVLDMVAEDIPLTIVYEDNDVIVVNKPQGMVVHPSAGHPKGTLVNALLHHADHL SAINDVVRPGIVHRIDKDTSGLLMVAKNDQAHESLAKQLKEKTSLRKYVALVHGVIPHDK GEINAPIGRSKVDRKMQAVIEGGKEAVTHFTVLERFDAFTLVELQLETGRTHQIRVHMKY IGYPLAGDPLYGPKKTLPGNGQFLHAKLLGFTHPTTGEQLVFEAPLPEVFEKTLHQLRNN H >gi|307679014|gb|GL456783.1| GENE 412 429131 - 429607 466 158 aa, chain - ## HITS:1 COG:SP0928 KEGG:ns NR:ns ## COG: SP0928 COG0597 # Protein_GI_number: 15900808 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Streptococcus pneumoniae TIGR4 # 7 147 9 149 153 126 50.0 2e-29 MLVAYFLISALLVGLDQWSKYLTVQNISLGETKEFIPGFLSLTHLRNTGAAWSLLEGKMI FFYVITVIVSVVIIYLLIKNYKKSIWYSVGLSFVLAGAIGNFIDRVRLGYVVDMLQTDFM NFPIFNVADSTLVVGVICIFIYLILDEKAAKEGKNGTN >gi|307679014|gb|GL456783.1| GENE 413 429613 - 430317 878 234 aa, chain - ## HITS:1 COG:no KEGG:EF1724 NR:ns ## KEGG: EF1724 # Name: not_defined # Def: CBS domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 234 1 234 234 432 99.0 1e-120 MGERADTFLAHFNRIEKWMRERLNNPVNMGFSEMTRRLSRKEKGQIAQFEEDLLQMAQLR NAIVHERIADDFVIAEPNEWAVQRIETIEQALTKPEKVVPKFAKRVTAFEITTSLETLLT IIAKKQYSQFPIYEKGVFKGLVTVRGIGVWFAIESTKGEVHIANRTVRELLASNYKRSNY QFVSIEATVFEVEQMFREQPRLEAVLISKSGHPNGELVGIVRPRDLASIHREKE >gi|307679014|gb|GL456783.1| GENE 414 430422 - 432092 2073 556 aa, chain - ## HITS:1 COG:SP1229 KEGG:ns NR:ns ## COG: SP1229 COG2759 # Protein_GI_number: 15901091 # Func_class: F Nucleotide transport and metabolism # Function: Formyltetrahydrofolate synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 556 1 556 556 769 69.0 0 MKTDINIAQAATLKPIQEIAETIGLSEDSLELYGKYKAKIDFPTLQSLEAQPEGKLILVT SINPTPAGEGKSTVTIGLGDALNQINKKTVIALREPSLGPVMGIKGGATGGGYAQVLPME EINLHFTGDMHAITTANNALAALLDNHLQQGNELKIDSRRVIWKRAVDLNDRALRQVVVG LGGPFQGVPREDGFDITVASEIMAILCLAQNLTDLKERLSRIIVAYNDQREPVTVKDLNV AGALTLLLKDALKPNLVQTIEGTPAFVHGGPFANIAHGCNSILATKTALHLGDYVVTEAG FGGDLGGEKFLDIKVPSLGKAPDAVVIVATIRALKMHGGLAKDQLAEENLPALQKGFANL EKHIQNMQRYDVPVVVAINEFTQDTEKEIQLLKEACQALGVPVELTSVWAQGGAGGTNLA KTVVAEIEANTKQFQPLYNPRQTIEEKIQAIVQTIYGGEQAIFSPKAEKQIADFTKNGWD QLPICMAKTQYSLSDDPQKLGRPEGFTITIRELVPKIGAGFIVALTGDILTMPGLPKVPA ALNMDVDETGQASGLF >gi|307679014|gb|GL456783.1| GENE 415 432272 - 432478 261 68 aa, chain + ## HITS:1 COG:lin1992 KEGG:ns NR:ns ## COG: lin1992 COG1278 # Protein_GI_number: 16801058 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Listeria innocua # 1 65 1 65 66 80 66.0 7e-16 MQKGIVKWFDNRKGYGFIVYNEEDEIFVHFTAIEGDGFKSLDENQSVEFEIMEGNRGLQA AHVKKIDN >gi|307679014|gb|GL456783.1| GENE 416 432583 - 433044 259 153 aa, chain - ## HITS:1 COG:no KEGG:EF1727 NR:ns ## KEGG: EF1727 # Name: ebsA # Def: EbsA protein # Organism: E.faecalis # Pathway: not_defined # 1 153 1 153 153 274 100.0 1e-72 MKKQKFYWQPELASTIIYWSCTFCILFISLILALENNGPYLISNLVMVPFFVFAYLGIAR SFNMTETSLIVRDVLWFRKKALPLSQIEKVTYNEKSIEIFSSEFKEGSKVFLMKKKTIPL FLEALKVKKPELKVAEDHSLGLHKKEEKNKSES >gi|307679014|gb|GL456783.1| GENE 417 433145 - 433552 518 135 aa, chain + ## HITS:1 COG:BS_ypdQ KEGG:ns NR:ns ## COG: BS_ypdQ COG0328 # Protein_GI_number: 16079258 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HI # Organism: Bacillus subtilis # 4 128 5 127 132 100 40.0 8e-22 MLRIYVDAATKGNPGESGGGIVYLTDQSRQQLHVPLGIVSNHEAEFKVLIEALKQAIANE DNQQTVLLHSDSKIVVQTIEKNYAKNEKYQPYLAEYQQLEKNFPLLLIKWLPESQNKAAD MLARQALQKFYPNKK >gi|307679014|gb|GL456783.1| GENE 418 433682 - 434176 638 164 aa, chain - ## HITS:1 COG:lin0783 KEGG:ns NR:ns ## COG: lin0783 COG2606 # Protein_GI_number: 16799857 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 8 161 3 156 158 161 53.0 5e-40 MAKKKTQQKTNAMRMVEQHKVPYKEYEFAWSEDHLSAESVAESLGIEKGRIFKTLVTVGN KTGPVVAVIPGNQELDLKKLAKASGNKKVEMLHLKDLEATTGYIRGGCSPIGMKKQFPTY LAEEAQQYSAIIVSAGKRGMQIELAPEAILSLTNGQFAEITTKE >gi|307679014|gb|GL456783.1| GENE 419 434194 - 434994 526 266 aa, chain - ## HITS:1 COG:lin0494 KEGG:ns NR:ns ## COG: lin0494 COG0710 # Protein_GI_number: 16799569 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate dehydratase # Organism: Listeria innocua # 17 259 4 245 252 233 50.0 3e-61 MKREKQTRKLGGTVKPVIVKNVRIGEGNPKIVVPIVAPTAEDILAEATASQTLDCDLVEW RLDYYENVADFSDVCNLSQQVMERLGQKPLLLTFRTQKEGGEMAFSEENYFALYHELVKK GALDLLDIELFANPLAADTLIHEAKKAGIKIVLCNHDFQKTPSQEEIVARLRQMQMRQAD ICKIAVMPQDATDVLTLLSATNEMYTHYASVPIVTMSMGQLGMISRVTGQLFGSALTFGS AQQASAPGQLSVQVLRNYLKTFEQNK >gi|307679014|gb|GL456783.1| GENE 420 435111 - 436895 193 594 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 355 579 12 233 318 79 27 3e-13 MEEKYQSEWSRELPMKEQLTIVQRLFRFAKPFRRMFYTAILFAFGLSIINILLPRVIQVF MDNYLTPKTATMQVILTFAAIYFFGVIVKSIVWFFQWYLYSMASLKTYQYIRVKLFEKLH TLGMRYFDQTPAGSTVSRVTNDTETLFEFWYVFLMVITGIFAVISSFFAMFQLSPEISFY CLIFLPILLVVIWYYQKFSSKLYRSMREKLSQLNTKLNEYISGMQIIQQFRQEKRLEKEF EETNDDYLKTRVAMIRMNSLLLSPIINLLYTLAIALALTMFGIDALHSPVEAGMIYAFVT YVQAFFNPMTQMMDFLSIFTDGIVAGSRILKIMDTEELTPQQSVGANGEIIRGKIEFRNV TFSYDGKNEVLKNISFVANPGETVALVGHTGSGKSSIINVLMRFYEFYEGQILIDDRDIR DFPMTELREKMGLVLQDAFMFYGDIAGNIRLLNPNITDEQIKQAAEFVQADKFIHTLPNT YHAKVIERGASYSSGQRQLISFARTIVTDPKILVLDEATANIDTETEGLIQEGLAKMRQG RTTIAIAHRLSTIRDANLILVLDKGQIVERGTHETLLAEGGLYADMYQLQSTEV >gi|307679014|gb|GL456783.1| GENE 421 436895 - 438646 209 583 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 352 560 37 251 329 85 28 4e-15 MSIFKKLGWFFKQEKKSYIIGVFSLMMVALVQLVPPKVIGVVVDEIVNKEIRLTKIIVWV ALLIGAGLAQYLFRYIWRMHIWGSAARLEKELRTQLFHHFTKMDSIFYQKYRTGDLMAHA TNDLNAIQNVAGAGILTFADSVITGGTTIIAMVLFVDWRLTLIALLPLPLLAVTSRVLGS KLHDAFRDSQAAFSAINDKTQESITGIKVIKTFGQEKEDLADFTEKIDDAIVKNKRTNFL DALFDPFITLIIGVSYVLTIIIGGRFIMEGTISLGQLVSFIAYIGMLVWPMFAIGRLFNV LERGNASYDRVNELLHEKTHIIERKDAIKTMAQGTISMKIDSFSYPKEETVALENIQFSL QEGETLGIVGKTGAGKTTILKLLMREYDQYQGTISFGKHNIKNYTLDALMGAMGYVPQDH FLFSMTVRDNIRFAKPHLEQAAVEQAAALAFINQEIKAFPEGYDTMVGERGVSLSGGQKQ RISIARALIVEPELLILDDALSAVDAKTEEAILSNLKETRQEKTTIITAHRLSSVMHAKE ILVLDEGKIIERGTHPELLAEKGWYQRMWEKQQLEAKIEGSES >gi|307679014|gb|GL456783.1| GENE 422 438844 - 439062 377 72 aa, chain - ## HITS:1 COG:BS_yneF KEGG:ns NR:ns ## COG: BS_yneF COG3763 # Protein_GI_number: 16078854 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 3 72 2 72 72 67 64.0 9e-12 MATGWVVLIAVIALLVGAAGGFFLARKYMQDYFKKNPPVNEDMLRMMMASMGQKPSEKKV RQMMQQMKNQGK >gi|307679014|gb|GL456783.1| GENE 423 439256 - 440149 1291 297 aa, chain - ## HITS:1 COG:lin1487 KEGG:ns NR:ns ## COG: lin1487 COG0648 # Protein_GI_number: 16800555 # Func_class: L Replication, recombination and repair # Function: Endonuclease IV # Organism: Listeria innocua # 3 294 4 295 297 432 72.0 1e-121 MLLGSHVSMSGKKMLLGSAEEAASYGSTTFMIYTGAPQNTRRKPIEEMNIEAGQAFMKEH NLSNIVVHAPYIINLGNTIKTENFGFAVDFLRQEIERAQALGATQITLHPGAHVGAGPEA GIKQIVKGLNEVLWKEQIPQIALETMAGKGTEIGRTFDELAAIIDGVTLNDKLSVTLDTC HINDAGYNVKDDFDGVLVEFDKIIGLDRLKVIHVNDSKNPMGSHKDRHANIGFGTIGFEA LNGVVHHEKLTALPKILETPYVGEDKKNKKAPYGFEIAMLKNQTFDPELLEKIQGQN >gi|307679014|gb|GL456783.1| GENE 424 440160 - 440627 358 155 aa, chain - ## HITS:1 COG:no KEGG:EF1737 NR:ns ## KEGG: EF1737 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 155 1 155 155 299 99.0 2e-80 MAQSIETVTAYIETVEPNWRIAYQQVLDVVSQNLPAGFELTMQYGMPTFVVPLSVFPEGY LNRGDEPLPFISLGATKRQVALYHMGLMGNEAVRSWFQEAYQEQVSTKLNMGKSCLRFTN PKRIPYELIGKLVTKITLEEWLQQYQHYQKKKKNY >gi|307679014|gb|GL456783.1| GENE 425 440627 - 441289 624 220 aa, chain - ## HITS:1 COG:no KEGG:EF1738 NR:ns ## KEGG: EF1738 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 220 1 220 220 376 99.0 1e-103 MKSIVEKLNLTKYQQLVILNRPQGEYLSEFASAAQQLPSEPVELIFAFVETMAEFQEIVS MVIEGQHLVENGLLYVAYPKKGNKMYPTFVHRDEIFPTLQVNEADGYIKGSTLKFNRMVS LDETFTVVGMKNVLKKPAKNQTSSAVGDYVQYLPEIEALVQTEPAAAATFAALTPGYQKE WARYVFSAKRAETRKKRQTEMLVILKEGYKTKALYQQRKK >gi|307679014|gb|GL456783.1| GENE 426 441470 - 442732 727 420 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 3 419 7 415 418 284 39 4e-75 MNSAFFEELKARGLVYQVTDEEALQKQLNEESVKLYIGFDPTADSLHIGHLLPILMLRRF QQNGHVPIALVGGGTGMIGDPSFKDAERSLNTLDTVKAWSESIKGQLSRFIDFEDEKNPA ILANNYDWLGELSLIDFLRDVGKNFTINYMMSKESVKRRIETGISYTEFAYQLLQAYDFL KLYETEGCLLQLGGSDQWGNITSGIELLRREQEVQGFGLTMPLITKADGTKFGKTEGNAV WLDAEKTSPYEFYQFWINTDDRDVVKFLKYFTFLTLDEIATIEEEFTANPGQRAAQKALA KEVTTLVHGEAAYHQAVKISEALFSGDIQSLTAEEIKQGFKDVPTYEVQPEDQLSLVDLL VTSKIEPSKRQAREDVQNGAIYVNGERRQDLAAELTETDKIEGQFTVIRRGKKKYFLLKY >gi|307679014|gb|GL456783.1| GENE 427 442944 - 443951 1007 335 aa, chain + ## HITS:1 COG:SPy0097 KEGG:ns NR:ns ## COG: SPy0097 COG0744 # Protein_GI_number: 15674320 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Streptococcus pyogenes M1 GAS # 27 323 28 326 770 331 55.0 2e-90 MKNNSSNNKQKPTTSSGGNVFLLILNVIIRVFQSLVVFGVILIVLGGSLGLGIGMGYFAF LVEDTQPPTKEELQKEISDITEVSKMTYADGTPIANIKSDLIRTRINGDQMSPLLKKAII STEDEYFEEHHGVVPKALVRALVSDATGIGGSSGGSTLTQQLVKQQILTDETTFKRKANE ILLALRIEKYFSKDEIVTTYLNVSPFGRNNKGENIAGVEEAAKGLFGKSAKDLNLPQAAF IAGLPQSPIVYTPYTNTGALKDDLSLGMKRKDFVLFSMYREKAISQKEYEEAKAYDLKKD FLPTEQANVNTEGYLYYTVLDKAVEIVMDLDMKKS >gi|307679014|gb|GL456783.1| GENE 428 444073 - 445314 1114 413 aa, chain + ## HITS:1 COG:SPy0097 KEGG:ns NR:ns ## COG: SPy0097 COG0744 # Protein_GI_number: 15674320 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Streptococcus pyogenes M1 GAS # 1 398 381 768 770 359 48.0 6e-99 MQTAVANYGYLLDDGTADVNGNTMIETGNILMDNATGRILGFIGGRNFDINQNNHAFNAD RQVGSTIKPISVYGPAIDQGLIGSESRLANYPTTYADGREFVNSTTVDLNQFVTVRNALN WSFNIPVVHVNNELRKKMGDDNFSYNHYLSKMNYPASDAWAYESAPLGPVETNVVTQTNG FQALANKGKYQKAYMIEKITDNSGHVVYEHKDEGTQVYSPATASIMNDLLRSVVDSANTT KFKPTLAGLNPHLASADWVGKTGTTDEFKDSWLIVSTPTVTLSSWTGHDLPAPMTTTSGD NNGNYMANLANALYYANPELFGIGQKFELDPSVIKSKVSEFTGEKPGSITYNGAKFNTPG KTTTSYYAKDGAPQSTYKFGIGGTDSNYASYWGNLAPRATTNNNNNNNNKKNN >gi|307679014|gb|GL456783.1| GENE 429 445500 - 446600 557 366 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229549839|ref|ZP_04438564.1| ## NR: gi|229549839|ref|ZP_04438564.1| ABC superfamily ATP binding cassette, membrane protein [Enterococcus faecalis ATCC 29200] ABC superfamily ATP binding cassette, membrane protein [Enterococcus faecalis ATCC 29200] # 1 366 1 366 366 629 99.0 1e-178 MLKIETIKILKEKSLWFVFVAFILMLIYPLLAQPQQLSFKEMQYENRIKNNEQAKEKMKN EPAAKETLSEIEDESEQLRKAINAIKIGDEWALLEAEKKLEESNLNAMLKGTLYSIPIIE QQKRVKELQYLSENRIKQVDSSEVAKMPALNYLGFLLSMDFPYTLLLIIPSLMIIALATL EKRKNTVSLWNGLPLKLWEKYSIKISSILFTVGLVSYLSIFLSVISAFFKNGLGNPDYPV AIIEKGQSVTIISLSNYLSRSLIMFGMLLLALTVFSFLLSLFTGNLIVHSLLIVGVILSS GVSLISNKFFFTSYMNFPKIINGGNGYEPMDEIGLTFDFSLKMIVVYVLISLIVSAIVLR NRKGLF >gi|307679014|gb|GL456783.1| GENE 430 446593 - 447285 202 230 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 223 5 233 305 82 26 3e-14 MKVKELTVEYGNRTIIENLSMQAEFGEIIGLVAPNGTGKTTFFNAISGLIPKKNGNISLN KIDYNSRGATYLKELFFLESSKNLYDYLTPKEHLEYIKAAWKSNSDIEHIFEQLKMKEYQ NRTIKKLSLGMKQHVLLAMYLASDATILLLDEPFNGLDPTSVSLFIMCLKEIVSKDKIVI LSSHDLYNVEHTCTRILFMKNKKLVENDQRNLSLREQYDNLYLRGEERNA >gi|307679014|gb|GL456783.1| GENE 431 447474 - 448475 1363 333 aa, chain - ## HITS:1 COG:SPy0514 KEGG:ns NR:ns ## COG: SPy0514 COG1609 # Protein_GI_number: 15674618 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 6 333 7 333 333 410 67.0 1e-114 MEKQTITIYDVAREANVSMATVSRVVNGNPNVKPATRKKVLEVIDRLDYRPNAVARGLAS KKTTTVGVIIPDVSNAFFASLARGIDDVATMYKYNIILANSDGDDQKEVTVLNNLLAKQV DGIIFMGHRITDDIRGEFSRSKTPVVLAGSIDPDEQVGSVNIDYTEATKDATATLAKNGN KKIAFVSGALIDPINGQNRMKGYKEALAENGLSYNEGLVFESEYKFKAGINLAERVRNSG ATAAFVTDDELAIGLLDGMLDAGVKVPEEFEIITSNNSLLTEVSRPRLSSITQPLYDIGA VSMRLLTKLMNKEEIEEKTVVLPYGIDQKGSTK >gi|307679014|gb|GL456783.1| GENE 432 448690 - 449793 1378 367 aa, chain + ## HITS:1 COG:lin1613 KEGG:ns NR:ns ## COG: lin1613 COG0006 # Protein_GI_number: 16800681 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Listeria innocua # 3 367 2 365 365 389 52.0 1e-108 MNQEKITDLKNWMHQEKIDFTYISDPGHIAYFSGYESEPHERVLALFIAADDQSFLFTPA LEVEDAEKSSWTYPVYGYLDSENPWEKIAALLNKRTQGTPRFALEKQALSLARFDQLKTY FPASDFSHDVTPLIEKLQLIKTEPEIQRLLEAGSWADVAFEIGFKAIQAGVAEQEIVAEI EYQLKRQGIRSMSFDTLVLTGKNGASPHGVPGETKIEPHDLVLFDLGVVHNGYCSDATRT VSYLEPSDFQKEIYGIVLEAQLAATEAVKPGVTAGELDDIARGVITKAGYGEYFNHRLGH GIGTTVHEYPSLVHGNDLVIEEGMCFSIEPGIYIPGKVGVRIEDCLHVTKTGSEPFTKTT KELQIIE >gi|307679014|gb|GL456783.1| GENE 433 449914 - 450501 1124 195 aa, chain - ## HITS:1 COG:BH3244 KEGG:ns NR:ns ## COG: BH3244 COG4980 # Protein_GI_number: 15615806 # Func_class: R General function prediction only # Function: Gas vesicle protein # Organism: Bacillus halodurans # 7 130 9 136 140 62 37.0 6e-10 MAKKGGFFLGAVIGGTAAAVAALLLAPKSGKELRDDLSNQTDDLKNKAQDYTDYAVQKGT ELTEIAKQKAGVLSDQASDLAGSVKEKTKDSLDKAQGVSGDMLDNFKKQTGDLSDQFKKA ADDAQDHAEDLGEIAEDAAEDIYIDVKDSAAAAKETVSAGVDEAKETTKDVPEKAAEAKE DVKDAAKDVKKEFKG >gi|307679014|gb|GL456783.1| GENE 434 450517 - 450948 607 143 aa, chain - ## HITS:1 COG:SPy0587 KEGG:ns NR:ns ## COG: SPy0587 COG4768 # Protein_GI_number: 15674673 # Func_class: R General function prediction only # Function: Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain # Organism: Streptococcus pyogenes M1 GAS # 6 140 6 133 135 94 48.0 9e-20 MSGGEIAALIAAVAFVVLVIFLVLVLYKVSQVVSKIEDTIDETNTTIKVVTSDVNVLSRQ VEGLLVKSNELLTDVNQKVATIDPLFTAVADLSESVSELNTSSKHLITKVGTVGKGTAKA GLVSKVGGSAFRAMRSKNKKTNN >gi|307679014|gb|GL456783.1| GENE 435 451126 - 452022 1348 298 aa, chain - ## HITS:1 COG:SP2092 KEGG:ns NR:ns ## COG: SP2092 COG1210 # Protein_GI_number: 15901907 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Streptococcus pneumoniae TIGR4 # 2 293 4 299 299 457 80.0 1e-128 MKVKKAVIPAAGLGTRFLPATKAMAKEMLPIVDKPTIQFIVEEALASGIEDILIVTGKAK RPIEDHFDSNVELENNLKEKNKTDLLKLVEETTDVNLHFIRQSHPKGLGHAVLQAKAFVG NEPFVVMLGDDLMEDKVPLTKQLMDDYEQTHASTIAVMKVPHEDTSKYGIINPEKEIEKG LYNVENFVEKPKPEEAPSDLAIIGRYLLTPEIFDVLENQKPGAGNEIQLTDAIDTLNKTQ RVFAREFKGERYDVGDKFGFMKTSIEYGLTHPEVKDNLREYIINLGAQLAKKEQPKEK >gi|307679014|gb|GL456783.1| GENE 436 452034 - 453056 1401 340 aa, chain - ## HITS:1 COG:L0016 KEGG:ns NR:ns ## COG: L0016 COG0240 # Protein_GI_number: 15673320 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Lactococcus lactis # 3 336 4 337 341 440 67.0 1e-123 MKQKVAVLGPGSWGTALAQVLAENGHEVCIWGNKPEQIDEINTKHTNKHYLPELILPTSI QATTDLATALVDVDAVLFVVPTKAIRSVAQEVAQHLKTKPIIIHASKGLEQGTHKRISEV IAEEIPAEKRQGIVVLSGPSHAEEVAVHDITTITAASENLADAVYVQELFMNDYFRIYTN DDVIGVETGAALKNIIALGAGAIHGLGFGDNAKAAIMTRGLAEISRLGVAMGANPLTFIG LSGVGDLIVTCTSVHSRNWRAGNLLGKGHKLDEVLENMGMIVEGVSTTKAAYELAQQLEV EMPITETIYNVLYNDEDVQQAAKEIMLRDGKTENEFTLDF >gi|307679014|gb|GL456783.1| GENE 437 453125 - 453961 924 278 aa, chain - ## HITS:1 COG:BS_lgt KEGG:ns NR:ns ## COG: BS_lgt COG0682 # Protein_GI_number: 16080552 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Prolipoprotein diacylglyceryltransferase # Organism: Bacillus subtilis # 6 270 8 266 269 248 50.0 7e-66 MMLAQVNSIAFRLFGIPVYWYAIIIVSGIALAVWLSSREAVRVGLKEDDVFDFMLWGLPA AIVGARLYYVAFQWQDYVDNPIEIFFTRNGGLAIYGGLIGGGLALFFFTRHRFISTWTFL DIAAPSVILAQGIGRWGNFMNHEAYGPATTRQFLENLHLPTFIIDNMNINGTYHQPTFLY ESVWNVLGFIVLVLLRKKPHFLKEGEVFLGYIIWYSFGRFFIEGLRMDSLYAFSNIRVSQ LLSLVMFVAAIVIVIVRRRNPNLKFYNREKQKKKITTS >gi|307679014|gb|GL456783.1| GENE 438 453976 - 454911 1027 311 aa, chain - ## HITS:1 COG:SPy0584 KEGG:ns NR:ns ## COG: SPy0584 COG1493 # Protein_GI_number: 15674671 # Func_class: T Signal transduction mechanisms # Function: Serine kinase of the HPr protein, regulates carbohydrate metabolism # Organism: Streptococcus pyogenes M1 GAS # 1 308 1 306 310 369 61.0 1e-102 MTEVVKIYQLVENLSLEVVYGDEESLNRTIKTGEISRPGLELTGYFNYYSHDRLQLFGSK EITFAERMMPEERLLVMRRLCAKDTPAFIVSRGLEIPEELITAAKENGVSVLRSPISTSR LLGELSSYLDGRLAVRTSVHGVLVDVYGLGVLIQGDSGIGKSETALELIKRGHRLIADDR VDVYQQDELTVVGEPPKILQHLIEIRGIGIIDVMNLFGASAVRGFMQVQLVVYLEAWEKD KKYDRLGSDDAMVEIANVDVPQIRIPVKTGRNVAIIIEVAAMNFRAKTMGYDATKTFEER LTRLIEENSGE >gi|307679014|gb|GL456783.1| GENE 439 455121 - 456083 921 320 aa, chain + ## HITS:1 COG:CAC3468 KEGG:ns NR:ns ## COG: CAC3468 COG0322 # Protein_GI_number: 15896707 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Clostridium acetobutylicum # 5 138 3 139 373 129 48.0 5e-30 MKEYLKEKAHQLPLTPGVYLMKDATDTIIYVGKAKKLKNRVSSYFINSNQHSRKTMRLVK QIIDFDVLHTDTELDALLLECQLIQQYRPRYNRQMNAYEQYSYVSVAVNERQLEIKLLNI PTKKNCFGPYSIRRKLNRLKIILDSIYDLVPTNYWHQTFQKESAIPTELFQQELFDFFHN QGREPIKRIAQQMQEAAEKQAFEKAAKLKEDWLFLTRFANQNQRISQANQRDWQLMWLPC QKKIKYYLIYQGLVVATRVVTKQTFQKYSPLELAKKIMPKKSPKTIEHYSKQQVDFLNIL YGYISRHPECHLENLTIEKA >gi|307679014|gb|GL456783.1| GENE 440 456118 - 456474 311 118 aa, chain - ## HITS:1 COG:no KEGG:EF1751 NR:ns ## KEGG: EF1751 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 118 1 118 118 154 100.0 9e-37 MTYFQRLVVNTLTFISLSVVFPGMIHVRGIMPAIIAAFVLSILNMLVKPVLTILSLPFTL LTFGLFSFVVNAAILQMTSFFVGEMNFGFSSFWAAVLMAVIMSIVNTIVTDHNLSKYE >gi|307679014|gb|GL456783.1| GENE 441 456474 - 456797 424 107 aa, chain - ## HITS:1 COG:MA4346 KEGG:ns NR:ns ## COG: MA4346 COG1983 # Protein_GI_number: 20093134 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Putative stress-responsive transcriptional regulator # Organism: Methanosarcina acetivorans str.C2A # 1 61 111 169 183 60 45.0 9e-10 MKRKLTKSPNNVVLTGSLAGIADWLGIDPTIIRVVYVLLSFFSAGFPGILLYIALAVLIP SGRTGSDRGYGHQNPYNRNVRNESPYAANKKQRKEAEKIDDDEWSDF >gi|307679014|gb|GL456783.1| GENE 442 456872 - 458473 2294 533 aa, chain - ## HITS:1 COG:lin2630 KEGG:ns NR:ns ## COG: lin2630 COG3595 # Protein_GI_number: 16801692 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 213 530 107 414 416 179 32.0 1e-44 MKERERVLELVKKGILTSEEALILLENMATEKDEKQIEKAAEKVDTQNIGTTNKEDQVAD LMDALEKGESEGPTVDSFEENKQDSAEKDRENLERILDELATKANRASAELDEVNAEIAG IKEEIKEVAEEIGTLDTKEELDALTEDEQVQRKDLHVLLAQLEEKLATQSTEKTALEEEL KNIRKEQWKGQWNDTKEKVSSQFSEEWKDQATDTFNQVGGKVAEVGGQVGEFLKKTFNSF SDTMNDNVEWKDIKMKVPGVATTKFEHEFNYPNPQASLIDVKVANGTVVFKTWDQEDVKV EAKIKLYGKMAGDSPMEAFLERSDIDVDDETISFQVPNKRVKADLTFYLPKRTYDHVSVK LLNGNVLVEELTAKDVYTKSTNGTITFKKIDATMLEIEGVNGEIKVLEGTILDNIIETVN GDVSISAAPESLSVSLINGDIRITAKEKTLRRVEASSANGNIKLALPNDLGVEGQVKTNL GSINSRLTDIEVVREKKDRGNQQLHFRRVLEESMAQINASTTTGSIFLKDTDK >gi|307679014|gb|GL456783.1| GENE 443 458682 - 459359 829 225 aa, chain - ## HITS:1 COG:SP1395 KEGG:ns NR:ns ## COG: SP1395 COG0704 # Protein_GI_number: 15901249 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate uptake regulator # Organism: Streptococcus pneumoniae TIGR4 # 1 217 1 217 217 234 57.0 9e-62 MLRTQFEEELLNLHNQFYEMGMMVSSAVHKSVKAYINHDKKLAQEVIDRDIEINDMEVKL EKKSFEMIALQQPVTTDLRMIITVMKASSDLERMADHAVSIAKSTIRLKGETRIPEIEKE ISDMSDYVKKMVDNVLIAYVKTDQKDARMIAQMDDRTNEYFDSIYKHAVEAMKANPETVI SGTDYLHVAQYLERIGDYVTNICEWIVYLATGKITELNSNRDEQF >gi|307679014|gb|GL456783.1| GENE 444 459374 - 460150 284 258 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 1 254 1 263 329 114 27 9e-24 MVRRSKMGKEIISSKDLHLYYGKKEALKGIDLTFNQGELTAMIGPSGCGKSTYLRCLNRM NDLIPDVTITGSVVYKGKDIYGPKTDNVELRKEIGMVFQQPNPFPFSVYENVIYGLRLKG VKDKQVLDEAVETSLKAAAVWEDVKDKLHKSALSLSGGQQQRVCIARVLAVEPDIILLDE PTSALDPVSSGKIENMLLTLKEKYTMIMVTHNMSQASRISDKTAFFLQGDLIEFNDTKKV FLNPKEKQTEDYISGKFG >gi|307679014|gb|GL456783.1| GENE 445 460143 - 460952 306 269 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 26 256 5 231 245 122 34 2e-26 MKEYNLNDTHLLQLDSQKDPIALHTEDLHVFYGDNEAIKGVDLQFEKNKITALIGPSGCG KSTYLRSLNRMNDGIANSRVTGKIMYKDVDVNTKEVDVYEMRKRIGMVFQRPNPFSKSIY ENITFALKQHGEKDKKKLDEIVETSLKQAALWDQVKDNLNKSALALSGGQQQRLCIARAI AMKPDILLLDEPASALDPISTGTVEETLVNLKDDYTIIIVTHNMQQAARISDYTAFFYMG KVIEYDHTRKIFTRPKIQATEDYVSGHFG >gi|307679014|gb|GL456783.1| GENE 446 460969 - 461853 940 294 aa, chain - ## HITS:1 COG:SPy1243 KEGG:ns NR:ns ## COG: SPy1243 COG0581 # Protein_GI_number: 15675203 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 1 294 1 294 295 407 72.0 1e-113 MNAKKADKIATGILYAVSGVIVLILAALLIYILARGIPHISWEFLTQPSRAYQVGGGIGI QLFNSLYLLLITMIISIPISLGAGIYLSEYAKKNWLTDLIRTSIEILSSLPSVVVGLFGF LIFVVQIGYGFSILSGALALTFFNLPLLTRNVEESLKAIHYTQREAGLALGLSRWETVKK VILPEALPGILTGVILSSGRIFGEAAALIYTAGQSAPALDFSNWNPLSVSSPISIFRQAE TLAVHIWKINTEGTMPDGAAVSAGASAVLILVVLLFNFGARFIGNRLYKRMTSA >gi|307679014|gb|GL456783.1| GENE 447 461853 - 462773 1128 306 aa, chain - ## HITS:1 COG:SPy1244 KEGG:ns NR:ns ## COG: SPy1244 COG0573 # Protein_GI_number: 15675204 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 2 301 4 303 311 376 74.0 1e-104 MEDVQKKLLTKSKRAKMEQRGKFISFLCIALIVAVVVSIFYFVASKGLATFFKDKINVFD FLFGTNWNPSDIGADGKPMVGALPMIAGSFIVTFLSAIVATPFAIGAAVFMTEISPKKGA KFLQPVIELLVGIPSVVYGFIGLSVIVPFVRSIFGGTGFGILAGTFVLFVMILPTVTTMT VDALKAVPRHYREASLALGATRWQTIYKVVLRAAVPGILTAVVFGMARAFGEALAIQMVI GNAAVMPTSLTTPASTLTSILTMGIGNTIMGTVENNVLWSLALILLLMSLLFNIVIRIIG KRGALK >gi|307679014|gb|GL456783.1| GENE 448 462896 - 463750 1185 284 aa, chain - ## HITS:1 COG:SP1400 KEGG:ns NR:ns ## COG: SP1400 COG0226 # Protein_GI_number: 15901254 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 1 282 1 285 292 322 56.0 6e-88 MKKRLLLFIGLASILTLTGCAKWIDRGESITAVGSSALQPLVETASEEYQSQNPGRFINV QGGGSGTGLSQVQSGAVDIGNSDLFAEEKKGIKAEDLIDHKVAVVGITPIVNKNVGVKDI SMENLKKIFLGEVTNWKELGGKDQKIVILNRAAGSGTRATFEKWVLGDKTAIRAQEQDSS GMVRSIVSDTPGAISYTAFSYVTDEVATLSIDGVQPTDENVMNNKWIIWSYEHMYTRKNP SDLTKEFLDFMLSDDIQERVIGQLGYIPVSKMEIERDWQGNVIK >gi|307679014|gb|GL456783.1| GENE 449 463926 - 464810 975 294 aa, chain - ## HITS:1 COG:L2 KEGG:ns NR:ns ## COG: L2 COG2177 # Protein_GI_number: 15672955 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division protein # Organism: Lactococcus lactis # 1 294 1 311 311 310 49.0 2e-84 MIRTFFSHLFESIKSLKRNGWMTVASASAVTITLVLVGIFMGVIFNATKLADDVEKNVTV SVFVDIGTKQNEMKTLEKQLKGLDNVEDISYSNKDQQLKKIQEQMGDAWNLFEGDSNPLY DVYYVRAKTPEDTKDIAKQAAKFPSVFKADYGGVNSDKIFKIAQTVRTWGLAAAALLLFV AVFLISNTIRITILSRQKEIQIMRLVGAKNSFIRWPFFLEGAWIGLIGAIVPVIIMTLGY HQVYNMFNPQLLRSNYSLIRPEDFIWKVNLLMIATGMIIGSLGSVISMRRFLKI >gi|307679014|gb|GL456783.1| GENE 450 464803 - 465489 357 228 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 215 4 219 223 142 36 3e-32 MIEMKDVMKKYSNGTTAIRNISVEIDQGEFVYVVGPSGAGKSTFIRLMYREEKATKGNLT VAGHDLMKIKNKEVPYLRREIGIVFQDYKLLPKKTVYENVAYAMQVIGRRPREIKKRVME VLDLVGLKHKVRVFPSELSGGEQQRVSIARAIVNTPKVLIADEPTGNLDPENSWEIMKLL DRINAQGTTVVMATHNSTIVNTIRHRVIAIENGRIIRDQVEGEYGYDD >gi|307679014|gb|GL456783.1| GENE 451 465595 - 466578 1086 327 aa, chain - ## HITS:1 COG:lin2653 KEGG:ns NR:ns ## COG: lin2653 COG1186 # Protein_GI_number: 16801714 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Listeria innocua # 1 326 1 326 327 454 71.0 1e-127 MGEPGFWDNTETAQKLINETNSLKEKYQQFHQLSEELDELTVMFELQQEEYDAEIQEELE ERIHLLQERLTTYELSLLLNEPYDHNNALIELHPGAGGTESQDWGSMLLRMYTRWAESHG FQVETLDYQAGDEAGIKSVTLLIKGYNAYGYLKSEKGVHRLVRISPFDSAKRRHTSFCSV DVMPELDDTIEIAINPDDLKIDTYRASGAGGQHINKTESAVRITHIPTGTVVASQAQRSQ LKNREQAMSMLKAKLYQLEMEKKAQEAASLRGEQMEIGWGSQIRSYVFHPYSMVKDHRTN YETGNVQAVMDGDLDGFIDAYLKQRLS >gi|307679014|gb|GL456783.1| GENE 452 466773 - 469310 3142 845 aa, chain - ## HITS:1 COG:SPy1805 KEGG:ns NR:ns ## COG: SPy1805 COG0653 # Protein_GI_number: 15675639 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Streptococcus pyogenes M1 GAS # 1 845 1 837 839 1102 68.0 0 MANFLKKMIENDKKELRRLEKIADKIDAHASAMEQLSDEQLREKTDEFKARYQKGETLDE LLPEAFAVVREAAKRVLGLFPYRVQLMGGIVLHDGNIPEMRTGEGKTLTATMPVYLNALS GEGVHVVTVNEYLATRDSNEMGELYNFLGLSVGLNINSKSSDEKREAYNCDITYSTNNEL GFDYLRDNMVVYRSQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKSTALYTRADNF VKRLKEDEDYKIDIQSKTIGLTEAGIEKAEQTFGLDNLYDIENTALTHHLDQALRANYIM LLDIDYVVQDNKVLIVDQFTGRIMDGRRYSDGLHQAIEAKEGVEIEDETKTMATITFQNY FRMYKKLAGMTGTAKTEEEEFREIYNIQVIQIPTNRPIIRDDRPDLLYPTLESKFNAVVE DIKERYHKGQPVLVGTVAVETSELLSDKLNAAKIPHEVLNAKNHFKEAEIIMNAGQKGAV TIATNMAGRGTDIKLGLGVLELGGLAVIGTERHESRRIDNQLRGRAGRQGDPGVSQFYLS LEDDLMKRFGSERIKTFLERMNVQEEDAVIQSKMFTRQVESAQKRVEGNNYDTRKNVLQY DDVMREQREVIYAQRQEVIMEENDLSDVLMGMVKRTIGRVVDSHTQLEKEEWNLDGIVDF AASTLVHEDTISKKDLENKSAEEIKDYLVARAQEVFEEKSQQLNGQEQLLEFEKVVILRV VDTKWTDHIDAMDQLRQSVGLRAYGQNNPLVEYQTEGYSMYNNMVGSIEYEVTRLFMKSE IRQNVQREQVAQGQAEHPETEQDAAAQSNTSAKRQPVRVDKKVGRNDLCPCGSGKKFKNC HGRNA >gi|307679014|gb|GL456783.1| GENE 453 469566 - 470117 669 183 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116333275|ref|YP_794802.1| ribosome-associated protein Y (PSrp-1) [Lactobacillus brevis ATCC 367] # 1 183 1 183 186 262 69 2e-68 MFRYNVRGENIEVTEAIRDYVEKKVGKLERYFSDSPEATVHVNLKVYTEKTAKVEVTIPL PYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTKINRKSRETGRNNTKAAVFLVGEETE ETPSELDIVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDAETNGTSIVYRRKDGKYGLI ETD >gi|307679014|gb|GL456783.1| GENE 454 470256 - 470891 310 211 aa, chain - ## HITS:1 COG:L0319 KEGG:ns NR:ns ## COG: L0319 COG1040 # Protein_GI_number: 15673071 # Func_class: R General function prediction only # Function: Predicted amidophosphoribosyltransferases # Organism: Lactococcus lactis # 13 211 30 216 216 128 38.0 9e-30 MLLRFKKWARPSLCQHCQAKFQKLPMTGTCFGCSRVSQERYCFDCQRWQLLYPEYSFHNA ALFHYDEGMQEWMERYKFQGDYRLRTCFNEEINSYFRQQSADYIIPVPLSEKRMQERGFN QVIGLLEAADVPYSPFLIRKEENVPQSKKTRKERMRLQQPFAIQKENQKKLKNCSVILVD DIYTTGRTLFHAAAVINDCYPKSLNTFTLAR >gi|307679014|gb|GL456783.1| GENE 455 470932 - 472248 680 438 aa, chain - ## HITS:1 COG:lin2657 KEGG:ns NR:ns ## COG: lin2657 COG4098 # Protein_GI_number: 16801718 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) # Organism: Listeria innocua # 58 436 57 438 439 317 42.0 2e-86 MEDLHGRKIIIEETERSLQTKLVYLPTMLERSPLTIQCQRCGEVVSKKENRLATNVYYCH ACIQLGRVTSCQKFCHLPERLNSPRTVFFEWSGQLTKGQQAISVELCETAKIRENRLVWA VTGAGKTEMLFAVLHQTLQEGGRIALASPRVDVCLELFPRIQAVFPHEAIALLHGNSQEP YRYTKLVICTTHQLLKFHQAFDLLIVDEVDSFPFVNNEHLYYGVRNARKKRSSLVYLTAT PTKELRKLLQQKKLAASILPARYHRRPLPVPRRFWVQSWQRLSSKNIKIIAHHLKRLLVR NSVLLFCPSISLIHQLHALIAERFFDKEVVAVYGSDELRLEKVQAMRQQKTDILITTTIL ERGVTFDAVSVIVYGANHRVFTSSTLVQIAGRVDRRQEFNYGEVLFLHDGETRDMKEAIR QIKQMNRLASKRGMLDGL >gi|307679014|gb|GL456783.1| GENE 456 472520 - 473236 450 238 aa, chain + ## HITS:1 COG:MA0995 KEGG:ns NR:ns ## COG: MA0995 COG3910 # Protein_GI_number: 20089872 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Methanosarcina acetivorans str.C2A # 4 236 14 250 251 200 45.0 2e-51 MENIFLKRLELKAFEEDSVFSKIEGLNKFNSLNFKKPITFFSGENGTGKSTLLEAIAVNW GFNPEGGSINFNFSTNDTHLDLHNYLTVGKSVKRAKDGFFLRAESFYNVATYAENIDLDF SEYGDKSLHHQSHGESFLNLVNHRFRGNGLYLLDEPEAALSPQRQLALMISIKKLIDEGS QFIIVSHSPILLAMPDSQIISFDKDSPLEITYEESMPYEITSLFLNNKNRILSHLFAE >gi|307679014|gb|GL456783.1| GENE 457 473561 - 473896 504 111 aa, chain - ## HITS:1 COG:lin2831 KEGG:ns NR:ns ## COG: lin2831 COG1440 # Protein_GI_number: 16801891 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIB # Organism: Listeria innocua # 4 104 2 100 101 115 64.0 1e-26 MSKKTIMLVCSAGMSTSLLVTKMQKAAFNQGLDAHIFAASASEADTNLENNPVDVLLLGP QVRYMKSDFEKRLSPKGIPTDVISMSDYGLMNGEKVLEQALDLLAQADKKE >gi|307679014|gb|GL456783.1| GENE 458 474017 - 474304 339 95 aa, chain - ## HITS:1 COG:no KEGG:EF1770 NR:ns ## KEGG: EF1770 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 95 1 95 95 177 100.0 1e-43 MVHTRQKKYDTITHYLKTNGGSQVTLTFTQFDELLFPHSGLPKTAKTDVDWWANDYKHPE KGAYGWLNASYQVVQVNLEKEYVVFNKLLKSAWYV >gi|307679014|gb|GL456783.1| GENE 459 474374 - 475108 736 244 aa, chain + ## HITS:1 COG:L98095 KEGG:ns NR:ns ## COG: L98095 COG1739 # Protein_GI_number: 15673073 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 30 234 3 207 209 221 53.0 7e-58 MREKVAIQLILFYTDFITREKDTHMLESYITVKQDGFSEIEIKKSRFICSVKRVTSEEEA KAFIAAIKKEHWKANHNCSAFVIGEKNDIQRSSDDGEPSGTAGVPMLEVLKKKELINVVA VVTRYFGGIKLGTGGLIRAYSHALSHTLDEIGLVIGKLQQELLITIAYPLLGKAQAFLEH SPYTLKETIYTESIQLICLVDEQATETFIAEMTDLLNGQLTIEKGATSYHELPFNEKGAQ ANDI >gi|307679014|gb|GL456783.1| GENE 460 475098 - 475331 450 77 aa, chain + ## HITS:1 COG:no KEGG:EF1772 NR:ns ## KEGG: EF1772 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 77 1 77 77 148 100.0 7e-35 MTFEEVLPQIKAGKKAVRKGWSGFELFIELRDEIGTSEGEFLQVTPYFLIKTSDEGYSMF SPTPCDVLAEDWVIVEA >gi|307679014|gb|GL456783.1| GENE 461 475415 - 476179 235 254 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 8 249 4 238 242 95 28 4e-18 MPKEFETKRVLVTGAASGIGQAQAIAFAEQGAEVIGIDLDETGLKQTAALVNLDSTKPFT YFVGDVSSPSFVQATMKQIVKDNGQIDILLNTAGILDDYRPSLETSEALWDQILATNLKS VFLVTNAILPYFLQQKKGVIVNMASIAGLVAGGGGAAYTASKHAIIGYTKQLSYDYAKLG IRANAIAPGAIQTPMNAADFAGEGEMATWVASETPAGRWAQPQEVAKLSLFLASDDADYI HGTVMTIDGGWTMK >gi|307679014|gb|GL456783.1| GENE 462 476325 - 476846 498 173 aa, chain + ## HITS:1 COG:lin0860 KEGG:ns NR:ns ## COG: lin0860 COG4708 # Protein_GI_number: 16799934 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 21 172 10 162 162 94 39.0 8e-20 MNHSSNPQTSTWSATALAKMALVTALYVVVTVLLAPLSFGPIQLRLAELFNYLGVFNKRY IWSITLGVAIANTASPLGIIDIVIGSAGTCAVLWIAYFATKNQQNLLIKLMLTAILFALS MFTVAGPLTFFYQLPFWYTWLTVGLGELLSMTVGGILIYVLNKKIQLVKRIEE >gi|307679014|gb|GL456783.1| GENE 463 476917 - 477651 526 244 aa, chain - ## HITS:1 COG:no KEGG:EF1775 NR:ns ## KEGG: EF1775 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 244 1 244 244 463 97.0 1e-129 MRKLILVFVGCAMAFCLWPNQAAAVAGGYGGGRVESPSGGNPSNGFSPSGDGSRSYVHHN ETGNSNTTPLEGLISTVFFVLFGGAMIWQRRRRNQPVDEDAFQEMWAALPGTSKEKKALL KEIQQTFLEIQQAWDQENLSVVKDNYTEKLYQKHLAVLQENQQAGIRNHVKKVKVAPASN YHHISETSFSLMLHFSCIDYEEDTQSGRVLSGYKHQKQYFSQLWYFDYNPSLGKWQGDFI QPKG >gi|307679014|gb|GL456783.1| GENE 464 477672 - 478001 349 109 aa, chain - ## HITS:1 COG:no KEGG:EF1776 NR:ns ## KEGG: EF1776 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 109 1 109 109 181 95.0 1e-44 MRNKQIEKVSQRLFIVTSVLAVSLLLLSVVVYPDLPAHVPIHVNFLGEGNSFGPRSSIFM WPAVLFGLSIYQRSYQSVQPYGRWLKVLLIIVNLGALFSILRLFIHLLV >gi|307679014|gb|GL456783.1| GENE 465 478129 - 479376 1437 415 aa, chain - ## HITS:1 COG:BH0634 KEGG:ns NR:ns ## COG: BH0634 COG0151 # Protein_GI_number: 15613197 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylamine-glycine ligase # Organism: Bacillus halodurans # 1 414 1 417 428 436 56.0 1e-122 MNILVIGRGGREHAIAKKLQREDKVKTVYCAPGNPGMSGDNIRTVPISEEQQTELIQFAK DNQIDWTFVGPETPLIEGIVDAFQAAGLLIFGPTKAAAIIEGSKSFAKDFMQKYQIPTAE YRVFRRLAPALEYIEQQGVPIVIKADGLAAGKGVVVAETKTAAKRALVAMMEDQQFGVSG QTVVIEEFLQGEEFSLMAFVSNEKVYPMVIAQDHKRIFDGDAGPNTGGMGAYTPVPQIPE EAVQQAISQVLKPTAKGMVAEKRPFQGILYAGLIQTATGPKVIEFNARFGDPETQVVLAR LESPLSEIISSLLVKEQPTIAWNELASVGVVVAAEGYPNQYKTNLPLPEMSGETIYYAGV TRSEQALVSAGGRIFLAEATASTLEEARKKVYQTLDNYSFPGMYYRKDIGVKGLI >gi|307679014|gb|GL456783.1| GENE 466 479395 - 480936 1668 513 aa, chain - ## HITS:1 COG:SP0050 KEGG:ns NR:ns ## COG: SP0050 COG0138 # Protein_GI_number: 15899995 # Func_class: F Nucleotide transport and metabolism # Function: AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) # Organism: Streptococcus pneumoniae TIGR4 # 1 513 1 515 515 648 64.0 0 MTKRALISVSDKTGVTTFAAGLVANGFEIISTGGTRGVLEEAGVPTLAIDDITGFPEMLD GRVKTLHPNIHGGLLAKRGNQAHQKALTEQGIQFIDLVVVNLYPFKETILKPAISEAEAI EMIDIGGPSMLRSAAKNYQDVTAVVDPSDYEQVLSEISSTGTSQLATRKRLAAKVFRHTA AYDALIADYLTTQVGESEPEKQTLTYERKQTLRYGENSHQQATFYQSVVPVSLSVASARQ LHGKELSYNNIRDADAALRIASEFTEPTVVAVKHMNPCGIGTGKTILAAYRQAFEADPVS IFGGIVVLNRPVDQATAAEMHQIFLEIIIAPSFEEEALALLSQKKNLRLLTLDFHAQEKK AVELVSVMGGLLIQEQDTVVENDQAWQVVTERQPTPAERDALNFAWKAVKHVKSNAIVLA NESQTVGIGAGQMNRIGSVKIAVDQAQAAGKLQGAVLASDAFFPMADSVEYAAQHGIQAI IQPGGSIKDQASIDLANHYGIAMIFTGTRHFKH >gi|307679014|gb|GL456783.1| GENE 467 480933 - 481505 241 190 aa, chain - ## HITS:1 COG:BS_purN KEGG:ns NR:ns ## COG: BS_purN COG0299 # Protein_GI_number: 16077719 # Func_class: F Nucleotide transport and metabolism # Function: Folate-dependent phosphoribosylglycinamide formyltransferase PurN # Organism: Bacillus subtilis # 2 185 3 186 195 211 50.0 6e-55 MKIAVFASGNGSNFEAIAAAFSQKKIAGQLSLVFCDQPEAYVLTRAKKRKIPVVCFSPSD FPSRGQYEEQVLKHLKEHQIDLIVLAGYLRIIGKTLLEAYPKRIVNIHPSLLPSFPGLHG IEEAFHYGVKITGITIHYVDSGVDTGPIIFQTTTKIDTEDTLDTLAEKIHALEHEWYPKI ISQIVKETMK >gi|307679014|gb|GL456783.1| GENE 468 481502 - 482533 759 343 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149378138|ref|ZP_01895857.1| Ribosomal protein S7 [Marinobacter algicola DG893] # 5 320 10 320 354 296 48 7e-79 MENAYSKAGVNVEAGYEVVERIQKHSQKTQRTGTLGMLGGFGGCFDLSSYKLKEPVLVSG TDGVGTKLLLAIEEQKHETIGIDCVAMCVNDVVAQGAEPLYFLDYLALGTVNPAKVEAIV AGVATGCCEANAALIGGETAEMPDMYEADAYDVAGFAVGIAEKSQLLTPSNVKEGDFLIG LPSSGLHSNGYSLVRNVFFKKHSFKTTDKLPELAPKTLGEELLTPTKIYVKELLPLLKAG LVHGAAHITGGGFLENLPRMFSSSLAAEIQLNSWPVLPIFKLIQKYGEIPPEEMYEIFNM GLGMILAVSPEHVEKVQELLPEAFEIGRLVPRKTKAVIFKEAL >gi|307679014|gb|GL456783.1| GENE 469 482535 - 483974 1326 479 aa, chain - ## HITS:1 COG:SPy0026 KEGG:ns NR:ns ## COG: SPy0026 COG0034 # Protein_GI_number: 15674270 # Func_class: F Nucleotide transport and metabolism # Function: Glutamine phosphoribosylpyrophosphate amidotransferase # Organism: Streptococcus pyogenes M1 GAS # 1 476 1 476 484 704 70.0 0 MSYEAKSLNEECGIFGIWGHPDAAQVTYFGLHSLQHRGQEGAGIVANNSGKLDGHRDLGL LAEVFQKQEQLNALEGTAAIGHVRYATAGTGSVDNIQPFLFKFYDSQIGLAHNGNLTNAK RLRKQLEREGAIFHSNSDTEILMHLIRKSTAVSFLDKLKESLNLVKGGFAYLLLTETMMI AALDPNGFRPLSIGQMNNGAYVVASETCALETVGARFIQDVAPGEVVIISDEGLKIEVFT TEVQPAICAMEYIYFARPDSNIAGVNVHTARKRMGKNLAIESPVAADMVVGVPNSSLSAA SGYAEEAQIPYELGLVKNQYVARTFIQPTQELREQGVRMKLSAVRGVVKGKKVVLVDDSI VRGTTIRRIIHLLKEAEAQEVHVRIASPPLKYPCFYGIDIQTRDELIAANYSIEEIKEQI GADSLAFLSEAGLIDGIQLNYDAPYSGLCMAYFNGDYPTPLYDYEEQYQASLKKETRRN >gi|307679014|gb|GL456783.1| GENE 470 483950 - 486169 2219 739 aa, chain - ## HITS:1 COG:L173921 KEGG:ns NR:ns ## COG: L173921 COG0046 # Protein_GI_number: 15673512 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain # Organism: Lactococcus lactis # 1 736 1 739 739 1027 68.0 0 MMNEPTPKEIKETRLYAEWGLTDEEYHQIETILQREPNYTETGLFSVMWSEHCSYKNSKP VLKKFPTEGPQVLQGPGEGAGIVDIGDGLAVVFKAESHNHPSAVEPYEGAATGVGGIIRD IFSMGARPIALLDSLRFGELTDARTRYLFQEVVAGISGYGNCIGIPTVGGEIAFEPCYQG NPLVNAMCVGLIRHDEIQKGQAKGVGNSILYVGAKTGRDGIHGATFASEEFSEGEEQQRS AVQVGDPFMEKLLLEACLDLIKNHQDILIGIQDMGAAGLVSSSAEMASKAGSGLILELDK VPQRETQMSPYEMLLSESQERMLICVEKGAEQQVCELFQTYDLEAVAIGSVTDDGQYRVF HGGKIVADVPVDALAEEAPVYQKAYQEPERMRAFKKLAPFIPEITNSTELLKRLLQQPTI ASKKSVYETYDSQVQTNTVVQPGSDAAVLRVRGTNKALAMTTDCNSRYLYLNPEIGGQIA VAEAARNIVASGAQPLAITDCLNYGSPDKPESFWELWTSADGIAAACRQLGTPVISGNVS LYNETDGQAIYPTPMIGMVGVIEDVSQITTQAFKQVDDLIYLIGETHADFNGSEIQKMQL GRIEGQLRSFDLKEEKANQELVLKAIQAGLVASAHDCAEGGVAVALAESAFANELGLQVT LPLAKEYLFAETQSRFILSVSPQHQEAFETLIGRKAQHIGKVTETGLIIHALDDVINCST KEAKALWEDAIPCLMKQKA >gi|307679014|gb|GL456783.1| GENE 471 486166 - 486840 580 224 aa, chain - ## HITS:1 COG:L176360 KEGG:ns NR:ns ## COG: L176360 COG0047 # Protein_GI_number: 15673513 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain # Organism: Lactococcus lactis # 1 218 1 220 223 302 66.0 3e-82 MKLAVIVFPGSNCDADLLWAVKEVMGVDAEFVRHDATSLAKFDGVLLPGGFSYGDYLRCG AIARFSPIINEVIRFATEGKMVFGTCNGFQILTEIGLLPGTLLRNDSLRFICKSVPLKVN THTKFTSEYPENVSIHLPVAHGEGNYYCDEKTLQELKEKNQIVFTYQEKVNGSLANIAGI CNEQGNVLGMMPHPERAMEELLGSTDGRSFFASIIKNFGKELSQ >gi|307679014|gb|GL456783.1| GENE 472 486841 - 487092 376 83 aa, chain - ## HITS:1 COG:BH0627 KEGG:ns NR:ns ## COG: BH0627 COG1828 # Protein_GI_number: 15613190 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component # Organism: Bacillus halodurans # 1 77 1 78 84 79 53.0 2e-15 MYFVKVYVTYKESILDPQGEAVKEAVHRLGFTEVAEIRVGKYFEMHVQQTEAIEEKIEQI CDQLLANVNMESYRFEILSLEEI >gi|307679014|gb|GL456783.1| GENE 473 487106 - 487819 653 237 aa, chain - ## HITS:1 COG:BS_purC KEGG:ns NR:ns ## COG: BS_purC COG0152 # Protein_GI_number: 16077713 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase # Organism: Bacillus subtilis # 3 233 5 235 241 262 57.0 4e-70 MEKKALVYTGKAKKLYQTENAAVLFVEYLDQATALNGQKKDKVLGKGALNNQITSLIFEH LQQQKIPNHFIKKVSEHEQLIQAVEMIPLEVVVRNYAAGSFSKRLAIEEGTKLVTPIIEF YYKEDRLDDPFINEDHIQFLKVATPAEIVEIKALALQINQALSQLFQRLNICLIDFKIEI GRTKANQLLLADEISPDTCRLWDLNTNEHLDKDVYRRELGEIVPVYEEVLQRLLTAN >gi|307679014|gb|GL456783.1| GENE 474 487971 - 489095 927 374 aa, chain - ## HITS:1 COG:lin1886 KEGG:ns NR:ns ## COG: lin1886 COG0026 # Protein_GI_number: 16800952 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) # Organism: Listeria innocua # 18 371 19 373 374 380 51.0 1e-105 MNKPLKVGATIGIIGGGQLGRMLVMSGKKMGFQMIVLDPTLNSPAGQVADRQIVAAFDQI SALTELAELCDVITYEFENIEVASLEKAIPLEKLPQGTELLKITQNRLLEKTFLQSIGCK IAPFAEVKSQKELPQATEKIGFPCVLKTIQGGYDGKGQVVLKCEEDFSQATELLANATCE LEKWVPFTKELSIIVAGNKHGYQSFPVSENIHRKNILHESIMPARISENVQQKAAELAQH IAEELNLSGVLAIELFLTDSEELYVNELAPRPHNSGHYSIEACSFSQFDAHIRGISNWGI GLPQLLQPVVMVNLLGEHLEKSYQLCTSKPTWQVHYYGKAESKVGRKMGHVTITTPCLSE TLKEIETVGIWNVT >gi|307679014|gb|GL456783.1| GENE 475 489088 - 489576 555 162 aa, chain - ## HITS:1 COG:BS_purE KEGG:ns NR:ns ## COG: BS_purE COG0041 # Protein_GI_number: 16077710 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase # Organism: Bacillus subtilis # 1 161 1 161 162 216 69.0 2e-56 MKPLVAVIMGSTSDWATMKAACLVLEELGISYEKRVISAHRTPDLMFRFAEESRTKGLKV IIAGAGGAAHLPGMVAAKTTLPVIGVPVKTRTLNGIDSLLSIVQMPGGVPVATTAIGSAG ATNAGLLAAEILSIDDLQLAERIQARRQSLEKAVVESGEQLE >gi|307679014|gb|GL456783.1| GENE 476 489752 - 490618 1103 288 aa, chain - ## HITS:1 COG:Cgl2775 KEGG:ns NR:ns ## COG: Cgl2775 COG0330 # Protein_GI_number: 19554025 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Corynebacterium glutamicum # 19 286 46 323 325 232 42.0 6e-61 MEEKKTFYMSGYVGIASLLVILIAGIGLFIYGASHTNGVLVVLGIILLVGAILFLSSLTI VSPNQAKAILFFGRYLGTIKENGLFITIPFTQKMNISLKVRNFNSSLLKVNDSDGNPIEI SAVIVFRVVDTAKALFNVDYYQDFVEIQSETAIRHVATQYPYDTFSDNDVTLRGNTEQIS EELTKELQERLAVAGVEVIETRLNHLAYATEIASSMLQRQQAKAILAARQTIVEGAVSMT QMALEQIEEGQEINFTDERKVQLINNLLVSIITDKGTQPVINTGDVSS >gi|307679014|gb|GL456783.1| GENE 477 490768 - 491643 332 291 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90022317|ref|YP_528144.1| ribosomal protein S15 [Saccharophagus degradans 2-40] # 13 248 239 475 500 132 34 2e-29 MRYLSKDILEEVITQRPSDSYKSNFGRVVLIGGNRQYGGAIIMSTEACINSGAGLTTVIT DVKNHGPLHARCPETMVVGFEETVLLTNVVEQAEVILIGPGLGLDATAQQILKMVLAQHQ KKQWLIIDGSAITLFSQGNFSLTYPEKVVFTPHQMEWQRLSHLPIEQQTLANNQRQQAKL GSTIVLKSHRTTIFHSGEPFQNKGGNPGMATGGTGDTLAGIIAGFLAQFKPTIETIASAV YLHSLIGDDLAKTDYVVLPTKISQALPTYMKKYAQPHTAPDSELLEQKRSR >gi|307679014|gb|GL456783.1| GENE 478 491741 - 493381 1756 546 aa, chain - ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 1 545 1 549 549 474 46.0 1e-133 MKKYLKITMVCILLVGFLAGCTNKNENKKKQKNTKEAVQLMSPSELTTLNTSVLLDFPDA IVQTAAFEGLYSLDEQDQLVPAVAKALPMISEDGKTYTISLRKEAVWSNDDPVTAHDFEY AWKKMIDPKNGFVYSFLIVETIQNGAEISAGKLAPNELGVIAVDDYTLKVTLKEPKPYFT SLLAFPTFFPQNQKVVEQFGADYGTASDKVVYNGPFVVKDWQQTKMDWQLAKNNRYWDHQ NVRSDIINYTVIKETSTALNLFEDGQLDVATLSGELAQQNKNNTLYHSYPTATMNYLRLN QKRKGQATPLANENLRKALALGIDKENLVNNIIADGSKALHGAITEGFVANPTTGLDFRQ EAGNLMVYNKEKAQSYWKKAQAELGEKVNVELMVTDDGSYKKIGESLQGSLQELFPGLTI ELTALPTEAALNFGRESDYDLFLIYWTPDYQDPISTLMTLYKGNDRNYQNPVYDKLLDEA ATTYALEPEKRWATLIAAEKEVIETTAGMIPLSQNEQTVLQNDKVKGLNFHTFGAPLTLK NVYKEK >gi|307679014|gb|GL456783.1| GENE 479 493445 - 493765 486 106 aa, chain - ## HITS:1 COG:no KEGG:EF1792 NR:ns ## KEGG: EF1792 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 27 106 1 80 80 149 97.0 4e-35 MLIKSAESEEMTIFFDKENQPNAQVQMGIITLQPGEKRPLAGYARHEQDEYSYVISGEAH TILEDGQDLVGKAGQAQLIEAGEGHINYNDGLEPAVVVWMLVERTE >gi|307679014|gb|GL456783.1| GENE 480 493900 - 494919 1065 339 aa, chain - ## HITS:1 COG:lin0977 KEGG:ns NR:ns ## COG: lin0977 COG0115 # Protein_GI_number: 16800046 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase # Organism: Listeria innocua # 5 339 4 338 339 540 74.0 1e-153 MEKANLDWNNLGFSYIKTPFRYISYWRDGKWEEGTLTDNNQLTISEGSPALHYGQQCFEG LKAYQCADGSVNLFRPDENAKRLQKSCARLLMPQVPVETFVSACQEVVKANLAYLPPYGT GGTLYLRPYMIGVGDNIGVAPAKEYIFSIFCVPVGSYFKNGLAPTNFIVSEYDRAAGRGT GAAKVGGNYAASLLPGAEAHEKEFSDCIYLDPYTHTKIEEVGAANFFGITKEGTFITPKS ASILPSITKYSLLTLAKERLGMTALEGDVYIDQLADFSEAGACGTAAIISPIGGIQNGTD FHVFYSETEVGPVTKQLYDELVGIQFGDKEAPEGWIVKV >gi|307679014|gb|GL456783.1| GENE 481 495119 - 495571 712 150 aa, chain - ## HITS:1 COG:BS_ydaT KEGG:ns NR:ns ## COG: BS_ydaT COG4876 # Protein_GI_number: 16077505 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 143 1 143 150 94 39.0 9e-20 MPWNMNDYPTSMKNLAPLIRKKAIDIGNALLADGYPDDRAIPIAISQAEKWYQEASAADK KAFEQEANPTKQDSHKQDKHAGKLLTAAVNVKYKDDQWLVISDSAEKASNTFTHKQEAVK RAQEIARNKQTKLKIYKQDGTLQETKEYTE >gi|307679014|gb|GL456783.1| GENE 482 495792 - 496361 712 189 aa, chain + ## HITS:1 COG:no KEGG:EF1796 NR:ns ## KEGG: EF1796 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 189 15 203 203 281 99.0 1e-74 MKMSKVLTTVLTATAALVLLSACSSDKKTDSSSSSKETANSSTEVVSGASISAKPEELEM ALSDKGNWIVAATDNVTFDNEVTVAGTFHDKGKDSNDVYRKLALYSQDDNKKVTAEYEIT VPKLIVSSENFNIVHGTVKGDIEVKANGFTLNGTKVNGNITFDKQEYKDSADLEKDGATV TGEVTVANN >gi|307679014|gb|GL456783.1| GENE 483 496408 - 497052 624 214 aa, chain - ## HITS:1 COG:no KEGG:EF1797 NR:ns ## KEGG: EF1797 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 214 1 214 214 398 99.0 1e-110 MQFLKKYGGYFLVLGVLLDFFTPYYVGFKDQGYNQLTEVISLLGDVNSPVRENFNRLTII AGMLMLASLPRIYSIFSRKTKKGAWLVVAMIGAYGLFDCIFSGLFSVDTSTAGTVAAALH NGGSAVGYTGFLLLSGVLTIIYSKYGSQKNKNLFGFLFILCMLAAGLYGLARIPQLQQVK PFNYLGLWQRVSSFCNYLPMLALCLQTKTNDKFD >gi|307679014|gb|GL456783.1| GENE 484 497173 - 498327 989 384 aa, chain - ## HITS:1 COG:lin0908 KEGG:ns NR:ns ## COG: lin0908 COG0628 # Protein_GI_number: 16799980 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Listeria innocua # 78 365 69 350 378 96 27.0 6e-20 MKKYNVDWNYWVVRFLFVMALIVGYLLITNYQHFVHSVSGLLGILSPFITGFVIAYLLSG SQKKIEGLLERVPLPVVKKAKHGLSVLLLYLIILFIFVLTLNYIVPLLISNLVDLANSLP TFYDHMVQFVMSLEDKGILKTAAIEKYLNSVLKDLSPERFLNQWTQALFSLGTLTKNVSS FFLNAFLTLIISIYALVFKQSILTFVEKAAHKLLSEKVYKQTQTWLNTTNKIFYKFISCQ FLDACIIGVSSTILLSILNVKFAVTLGILLGICNMIPYFGSIFASIVAGVITLFTGGVTQ AITVLLVLLILQQIDGNIIGPRIMGDALNVNPILIIVSITIGGAYFGVLGMFLAVPVAAI IKIIVSEWLNESKENDKIVDSIES >gi|307679014|gb|GL456783.1| GENE 485 498567 - 502541 4074 1324 aa, chain - ## HITS:1 COG:no KEGG:EF1800 NR:ns ## KEGG: EF1800 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 1324 1 1324 1324 2488 99.0 0 MKHGKIKRFSTLTLLASATILVPLSTSAEETTNSSTETSSSMVEPTATEEKLWQSDFPGG KIGEWQDVIGKTNRELAGESLAISRDAAAGNNAVSLNLDSPKLADGEVETKFKYTAGSGR TGVIIRGNTKDSWVFVGYNANGKWLVESPNSWNDSISGPTLNEDTNYLLKVRYVGEKITI WLNTTLIYEGEPVLANGDKIPTEAGHVGVRLWYDKKIVNYDYFKNGPVDSIPEIVPEVTQ IAPVKVFTKIGVAPKLPKQVKVTYNTGKEANEAVRWDEIDPAAYKEPGTFEVDGTLENTN IKAKASIVVAKDNEAEKGDKISSADLTAVVDPQFPRIIRYEDPQSNQVIFNGQHEKIDQV MIDGKAYKATAEKQKSEANQAVYNVAVPEIGLHFTTTLTVSEGQELAMKLSDIREEGIKI HTISIPNQGLISVNSTDEGATFAGVVMNTGTNANNGNKNGDTIQDLTTTSQEETKKYMYG FLNTANYAASFWTNAYGDGSVDGSDNNRIHKQTKEAATGFVTTLSSGAWTYRPFDAPEDY TTGETPEVKVKFSKDSNDDNRVDWQDAAIGFRSIMNNPMGAEKVPELVNQRIPFNFASQA TNPFLVTLDESKRIYNLTDGLGQMNLLKGYQNEGHDSAHPDYGAIGQRPGGEQALNQLID EGHKLNAVFGVYINDTESYPEAKGFNEELVDPTKRGWDWLDPSYFIKQRPDALSGRRYER FKELKQKAPNLDYIYVDVWGNQGESGWASRQLSKEINSLGWFTTNEFPNALEYDSVWNHW SAEKDYGGTTTKGFNSTIVRFIRNHQKDTWIISDNPLLGGAEFEAYEGWVGKTNFNTYRQ KTFAINVPTKFLQHYQITNWETTTAADGQIYGTIKLANGAEKVTVTQADANSPRSITLNE TEVLKGDAYLLPWNVNGQDKLYHWNPKGGTSTWSLDKKMQGKTNLHLYELTDQGRIDKGA IATTNNQVTIQAEANTPYVIAEPDSIEPMTFGTGTPFKDPGFNEANTLKNNWKVFRGDGE VKKDANGDYVFSSEKERTEIKQDINLPKPGKYSLYLNTETHDRKATVTVKIGGKKYTRTV NNSVAQNYIQADINHTSRKNPQYMQNMRIDFEIPDNAKKGSVTLAVDKGNSVTKFDDLRI VERQTDIMNPDKQTVIKQDFEDTQAVGLYPFVKGSAGGVEDPRIHLSERNEPYTQYGWNG NLVSDVLEGNWSLKAHKQGAGLMLQTIPQNIKFEPNKKYTVQFDYQTDGENVFTAGTING ELKNNNDFKPVGELTSTAADGQTKHYEAEIIGDASGNTTFGIFTTGADKDFIMDNFTVTV ESKK >gi|307679014|gb|GL456783.1| GENE 486 502691 - 503098 570 135 aa, chain - ## HITS:1 COG:SP0064 KEGG:ns NR:ns ## COG: SP0064 COG2893 # Protein_GI_number: 15900009 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Streptococcus pneumoniae TIGR4 # 1 135 1 134 134 167 62.0 4e-42 MSEHLVLVSHGRFCEELKKSAEMIIGPQETISTVTLLPEEGEADFLEKFEAITESLEDFV VFADLLGGTPCNILSKKIMQGASFDLYTGMNLPMVISYVNASLLAIEGDYVKESAESIVK VNELLLNVAVDDEDE >gi|307679014|gb|GL456783.1| GENE 487 503118 - 503927 985 269 aa, chain - ## HITS:1 COG:SP0063 KEGG:ns NR:ns ## COG: SP0063 COG3716 # Protein_GI_number: 15900008 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Streptococcus pneumoniae TIGR4 # 1 265 1 265 271 351 64.0 1e-96 MTKSNYKLTKEDFKQINRRSLFTFQLGWNYERMQGSGYLYTILPQLRKIYGDDTPELKEV MKTHTQFFNTSNFFNTIITGIDLAIEEKEGIAGKQTVSGLKTGLMGPFAAIGDSIFAALI PTIFGALAANMAINGNPTGIFIWIVAQIAVMVFRWKQLEFAYREGISLVTTMQHRLTALT DAATLLGVFMVGALVATMVNVKLSWAPSIGDVTLNMQNNLDMILPRLLPAGIVGGVYWML GKKNMTSTKAIFIVLIVCVALSALGVISK >gi|307679014|gb|GL456783.1| GENE 488 503914 - 504813 1222 299 aa, chain - ## HITS:1 COG:SP0062 KEGG:ns NR:ns ## COG: SP0062 COG3715 # Protein_GI_number: 15900007 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Streptococcus pneumoniae TIGR4 # 3 298 2 300 301 288 52.0 9e-78 MNILWWQILLLTLYAGYQILDELQIYSSLSAPVFAGLFAGLVMGDIKAGLIIGGSMQLTV LGVGTFGGASKIDANSGTILATAFSVSLGMNPEQAIAAIAVPVASLMIQLDILARFANTY FAHRIDKMVEDMNYKGIERNFLMGALPWSLSRMIPVFLALAFGGGLVQKVVSVLNGDLKW LGDGLSVAGAVLPAVGFAILLRYLPVKKHFPYLILGFTVTALLGTIFTNMQLLGTSVASV VKDFSGVFNALPMLAVALIGFALAAISYKNGQMIPSGPAAKKEHAANDSDEGEIEDDEI >gi|307679014|gb|GL456783.1| GENE 489 504827 - 505306 560 159 aa, chain - ## HITS:1 COG:SP0061 KEGG:ns NR:ns ## COG: SP0061 COG3444 # Protein_GI_number: 15900006 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Streptococcus pneumoniae TIGR4 # 1 157 1 157 158 224 75.0 7e-59 MSIIGVRIDGRLIHGQVANLWATKLNISRIMVVDDEVAGNAIEKSGLKLATPAGVKLSVL PVEKAAQNILAGKYDSQRLLIVVRKPDRLLKLVELGVPIKEINVGNMSQTNETRSITKSI NVVDQDIDVFKELNAKGVHLIAQMVPSDKAEDFMSLITK >gi|307679014|gb|GL456783.1| GENE 490 505303 - 507087 1808 594 aa, chain - ## HITS:1 COG:SP0060 KEGG:ns NR:ns ## COG: SP0060 COG1874 # Protein_GI_number: 15900005 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase # Organism: Streptococcus pneumoniae TIGR4 # 1 590 1 591 595 840 67.0 0 MERFEIKEEFLLNGQPFKILSGAIHYFRVDPSDWHHSLYNLKALGFNTVETYVPWNLHEP QKGTFHFEGILDLERFLKLAQELGLYAIVRPSPYICAEWEFGGFPAWLLNEPGRMRSNNP TYLKHVAEYYDVLMEKIVPHQLANGGNILMIQIENEYGSFGEEKAYLRAIRDLMIARGVT APFFTSDGPWRATLRAGSMIEDDILVTGNFGSKAKENFGMMQAFFEEHGKKWPLMCMEFW DGWFNRWKEPIIKRDPQELAESVREALALGSINLYMFHGGTNFGFMNGCSARGTIDLPQI TSYDYDAPLDEQGNPTEKYFALQKMLHEEYPALPQAEPLVKDSFAQTAIPLTNKVSLFAT LETISQPVVSVYPQTMEQLGQNTGYLLYRTSIEKDAAEEKLRVIDGRDRLQLFVNQVHQA TQYQTEIGEDIYVTLPQENNQIDVLMENMGRVNYGHKLFADTQKKGIRTGVMADLHFMTQ WQQYCLPMTSCEQVDYSREWQPDQPSFYQYHMELAEVKDTFIDVSKFGKGIVFVNQTNLG RFWNVGPTLSLYIPKGLLKEGQNEIVIFETEGTYQPEIQLVKEPLYKEMKEGLQ >gi|307679014|gb|GL456783.1| GENE 491 507150 - 508091 872 313 aa, chain - ## HITS:1 COG:SA1995 KEGG:ns NR:ns ## COG: SA1995 COG1105 # Protein_GI_number: 15927773 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Staphylococcus aureus N315 # 1 311 1 310 310 304 50.0 1e-82 MIVTVTMNPSIDISYLLDHLKLDTVNRTSQVTKTPGGKGLNVTRVIHDLGGDVIATGVLG GFHGAFIANELKKANIPQAFTSIKEETRDSIAILHEGNQTEILEAGPTVSPEEISNFLEN FDQLIKQAEIVTISGSLAKGLPSDFYQELVQKAQAQEVKVLLDTSGDSLRQVLQGPWKPY LIKPNLEELEGLLEQDFSENPLAAVQTALTKPMFAGIEWIVVSLGKDGAIVKHQDQFYRV KIPTIQAKNPVGSGDATIAGLAYGLAKDAPAAELLKWGMAAGMANAQERTTGHVDVENVK KHLMNIQVVEIAK >gi|307679014|gb|GL456783.1| GENE 492 508107 - 509102 1283 331 aa, chain - ## HITS:1 COG:SA1994 KEGG:ns NR:ns ## COG: SA1994 COG3684 # Protein_GI_number: 15927772 # Func_class: G Carbohydrate transport and metabolism # Function: Tagatose-1,6-bisphosphate aldolase # Organism: Staphylococcus aureus N315 # 8 325 7 325 326 399 63.0 1e-111 MLTLTAGKKAAMDRLSTQEGIISALAIDQRGALKKMIKALDVEPTDAQIETFKELVSKEL TPYASAILLDPEYGLPAAKARDTEAGLLLAYEKTGYDATTPGRLPDLLADWSVLRLKEEG ADAIKFLLYYDVDEDPEINHQKHVFIERLGSECAEEDLPFYLELVSYDAQIADATSLEYA KVKPHKVNEMMKEFSKPQYKVDVLKVEVPVNMNFVEGFAPAETAYTKEEAANYFLEQSQA TDLPFIFLSAGVSTELFQETLRFAKEAGSTFNGVLCGRATWKNGVKPFVEAGETAACDWL KTEGRENIESLNEVIAATASSWHAKVQVNEG >gi|307679014|gb|GL456783.1| GENE 493 509125 - 510297 1371 390 aa, chain - ## HITS:1 COG:SPy0716 KEGG:ns NR:ns ## COG: SPy0716 COG2222 # Protein_GI_number: 15674774 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted phosphosugar isomerases # Organism: Streptococcus pyogenes M1 GAS # 1 389 1 389 399 443 56.0 1e-124 MFTAEKEELEQLGAEITTREIRQQPELWQETVTLYHENQTALENFLKEVQAKAQGKRTRV IFTGAGTSQYVGDTVVPYLRAHGDTQAFSFESIGTTDIVAKPEDYLIKDEPTLLVSFARS GNSPESLAAVEVANQVVETIHHLAITCAEEGQLAQISQKEENSFLFLMPTRSNDGGFAMT GSFSCMTLGTLLLFDQTAFEQKQDYVTALIKLGEEVLSREEELNEIVNLDFERIVYVGSG SLAGLTREAQLKILELTAGKVATIFDSSMGFRHGPKSFINEKTIMFGFVNNTPYTRDYDL DILEEVHGDEIAAGVFAIAQPGKRNFSGSTIEYSAETALLPDGYLALADIMVAQTVALLT SIKVGNKPDTPSPTGTVNRVVKGVTIYDYK >gi|307679014|gb|GL456783.1| GENE 494 510309 - 511040 573 243 aa, chain - ## HITS:1 COG:SPy0715 KEGG:ns NR:ns ## COG: SPy0715 COG2188 # Protein_GI_number: 15674773 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 6 242 3 239 240 229 52.0 4e-60 MENAFKNKALYHQLVDLLQERIETCMIPHDKLPSERELTAQYGVSRTTVRLALQELENRG YIYRRHGKGTFVSDIKKEAADLAGAYSFTEQMKGLGRKPHTRILSFEKLEADKFICQHLN LSLGEAVFKLSRLRIADNEPLMVEDTYLPVKFFLSLTDQLLRTKPLYDLFSEDFKQTVRL ADEELYASIASKEDAKLLMIPEGAPVLHLARQTYNMKNEIIEFTLSVARADQFHYQIRHI RNS >gi|307679014|gb|GL456783.1| GENE 495 511362 - 511493 62 43 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315036698|gb|EFT48630.1| ## NR: gi|315036698|gb|EFT48630.1| hypothetical protein HMPREF9501_00532 [Enterococcus faecalis TX0027] # 1 43 48 90 90 71 90.0 2e-11 MSTHLINIYLIRKLVEGLNMLNNEYCHGFRKISYLLVVARTKQ >gi|307679014|gb|GL456783.1| GENE 496 511426 - 512328 770 300 aa, chain - ## HITS:1 COG:BS_gspA KEGG:ns NR:ns ## COG: BS_gspA COG1442 # Protein_GI_number: 16080894 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Bacillus subtilis # 1 291 1 275 286 235 41.0 1e-61 MENRKELAIVSCCNTNFVPHLAAMFVSILENSPSAAAVHFYVIDDNINFESKQLLYFTIK HTQINAELTFLKINPHFFKNVVTSERIPKTAYYRIAIPELFRGSQIERLLYMDCDMIALD DVAKLWTVDLGENIIAAVEDAGFHQRLEKMAIPAESMCYFNSGLLLIDVKKWLNLDVTTK VLRFIEENPDKLRFHDQDALNAVLHDRWTLLHPKWNAQGYILSKAKKHPTIYGEKQYEET RRAPSIIHFTGHVKPWTKEFQWYTKRYYDQYANRTAFRCVNTFNQYLSYTKISRRIEYAQ >gi|307679014|gb|GL456783.1| GENE 497 512318 - 513163 859 281 aa, chain - ## HITS:1 COG:BS_gspA KEGG:ns NR:ns ## COG: BS_gspA COG1442 # Protein_GI_number: 16080894 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Bacillus subtilis # 1 272 1 271 286 212 41.0 7e-55 MRKTQKIVPIVTASDENYAPYLNVMMTTVLENCHAERPVHFYVIDDGLSLSSKKALLETV SSNSQNATVEFLTADKEVYQNFLVSDHITTTAYLRISLPSLLQKYSYKKVLYLDADTLVL DDIVQLYDTPLVNQTIGAVIDPGQAYALKRLGIDSSDYYFNSGVMMIDIDRWNEKAITQK TIQYLEENGDRIVYHDQDALNAVLYEDWLALEPRWNMQTSLVFNRHEAPNEAYQKLYTAG NQEPAIIHFTGHDKPWNTLENHPYTALYLNKLKKVGARNGK >gi|307679014|gb|GL456783.1| GENE 498 513664 - 515475 1645 603 aa, chain - ## HITS:1 COG:lin0927 KEGG:ns NR:ns ## COG: lin0927 COG1368 # Protein_GI_number: 16799998 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Listeria innocua # 2 564 92 643 653 497 47.0 1e-140 MNIIFYREFTDFITIQSVFGFSKVSEGISGDLLALMRVHDVFYWLDTLVLLVLVFYSFKQ RRNHQVFVTKPINRRLAISISCLSVLLFSVNLFLSETDRPQLLQRIFDRNYIVKYLGLDA FTAIDGVKTAMSNEVRAEASSNELPEIMKFTKQNNLPLNPQYAGIAKGKNVFVIHLESFQ QFLINMKVQGQEVTPFLNQLYQNKATISFDNFFHEVGQGKTSDAENMLETGTFGLPQGSL FTQLGSDNTFEAAPAVLGQKGYTTAVFHGNVGSFWNRDHVYKNLGYQYFFDRSYFSKDDK MLGYGILDKQLLRESASELEHLQQPFYAKFLTVTNHTPYYTDDQNFPFPKLNTGNSIVDD YVRTAHYLDQSLEQFFHYLQTTSLYNHSIFVIYGDHFGISDANNKDLCKAFNRDPKTWTN YDNAQLQRVPLMFYMPGYTQGKIMHEYGGEIDVLPTLYHLLGVDDKNYIHFGTDLLSPQY KQVVPFRNGDFVTPQFSYLGGEIYNNQGKKLDQVPADLKAEVTKDNDWVKKSLSLSDKLN QENLLRFYKPQGFQEVQPKDYNYDVAFEKNKVLEVEKQKNAQSTSLFSQNGNQTTVQNYP TTP Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:08:58 2011 Seq name: gi|307679013|gb|GL456784.1| Enterococcus faecalis TX0312 genomic scaffold Scfld84, whole genome shotgun sequence Length of sequence - 70703 bp Number of predicted genes - 69, with homology - 68 Number of transcription units - 36, operones - 21 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 40 - 750 777 ## COG4420 Predicted membrane protein - Prom 776 - 835 4.6 2 1 Op 2 1/0.167 - CDS 849 - 2015 950 ## COG1680 Beta-lactamase class C and other penicillin binding proteins - Prom 2074 - 2133 7.1 - Term 2110 - 2163 19.5 3 2 Op 1 . - CDS 2168 - 2548 566 ## COG0346 Lactoylglutathione lyase and related lyases - Prom 2576 - 2635 5.0 - Term 2621 - 2669 10.1 4 2 Op 2 . - CDS 2681 - 4072 1986 ## COG1823 Predicted Na+/dicarboxylate symporter - Prom 4292 - 4351 4.7 + Prom 4279 - 4338 7.3 5 3 Tu 1 . + CDS 4367 - 4702 498 ## EF0743 hypothetical protein + Term 4706 - 4752 12.1 - Term 4687 - 4744 19.0 6 4 Op 1 . - CDS 4749 - 5135 621 ## COG4835 Uncharacterized protein conserved in bacteria - Prom 5168 - 5227 5.4 7 4 Op 2 . - CDS 5248 - 5679 219 ## EF0741 hypothetical protein - Prom 5738 - 5797 7.0 - Term 5988 - 6021 4.0 8 5 Op 1 . - CDS 6029 - 6673 981 ## COG1428 Deoxynucleoside kinases 9 5 Op 2 . - CDS 6682 - 7380 669 ## COG3201 Nicotinamide mononucleotide transporter - Prom 7479 - 7538 11.3 - Term 7835 - 7888 14.2 10 6 Tu 1 . - CDS 7935 - 9521 1885 ## COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases - Prom 9543 - 9602 6.5 - Term 9595 - 9653 18.1 11 7 Op 1 1/0.167 - CDS 9718 - 10647 1193 ## COG0549 Carbamate kinase 12 7 Op 2 . - CDS 10659 - 11756 1105 ## COG2957 Peptidylarginine deiminase and related enzymes 13 7 Op 3 3/0.000 - CDS 11749 - 13125 1327 ## COG0531 Amino acid transporters - Term 13139 - 13183 7.6 14 7 Op 4 . - CDS 13192 - 14211 1212 ## COG0078 Ornithine carbamoyltransferase - Prom 14450 - 14509 11.8 + Prom 14399 - 14458 6.6 15 8 Tu 1 . + CDS 14490 - 15455 500 ## COG2771 DNA-binding HTH domain-containing proteins + Term 15463 - 15504 1.1 - Term 15443 - 15497 4.1 16 9 Tu 1 . - CDS 15498 - 15815 443 ## EF0730 hypothetical protein - Prom 15855 - 15914 5.0 - Term 15895 - 15937 11.1 17 10 Op 1 . - CDS 15955 - 16083 219 ## PROTEIN SUPPORTED gi|227517695|ref|ZP_03947744.1| 30S ribosomal protein S9 18 10 Op 2 2/0.000 - CDS 16084 - 17457 1737 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase - Prom 17482 - 17541 5.6 - Term 17588 - 17647 13.9 19 11 Op 1 2/0.000 - CDS 17657 - 18745 1321 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase 20 11 Op 2 21/0.000 - CDS 18764 - 20194 1802 ## COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) 21 11 Op 3 31/0.000 - CDS 20194 - 21663 399 ## PROTEIN SUPPORTED gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 22 11 Op 4 . - CDS 21663 - 21968 439 ## COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit - Prom 22087 - 22146 5.0 - Term 22161 - 22199 5.0 23 12 Tu 1 . - CDS 22286 - 22396 139 ## - Prom 22489 - 22548 3.5 - Term 22484 - 22539 -0.8 24 13 Op 1 5/0.000 - CDS 22550 - 24580 2303 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) - Prom 24612 - 24671 7.7 25 13 Op 2 . - CDS 24706 - 26964 2529 ## COG0210 Superfamily I DNA and RNA helicases - Prom 26992 - 27051 6.3 + Prom 26993 - 27052 7.2 26 14 Tu 1 . + CDS 27129 - 28688 1425 ## COG0038 Chloride channel protein EriC + Term 28690 - 28733 12.6 + Prom 28692 - 28751 8.0 27 15 Op 1 10/0.000 + CDS 28824 - 29576 637 ## COG1349 Transcriptional regulators of sugar metabolism 28 15 Op 2 19/0.000 + CDS 29573 - 30490 988 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 29 15 Op 3 . + CDS 30514 - 32436 2481 ## COG1299 Phosphotransferase system, fructose-specific IIC component + Term 32444 - 32495 8.4 - Term 32431 - 32482 12.2 30 16 Tu 1 . - CDS 32483 - 33145 691 ## EF0716 hypothetical protein - Prom 33165 - 33224 5.3 - Term 33173 - 33215 9.2 31 17 Tu 1 . - CDS 33257 - 34540 2023 ## COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) - Prom 34560 - 34619 3.7 32 18 Op 1 . + CDS 34894 - 37179 1888 ## EF0714 hypothetical protein 33 18 Op 2 . + CDS 37234 - 37848 483 ## EF0713 hypothetical protein 34 18 Op 3 . + CDS 37830 - 37973 113 ## EF0713 hypothetical protein + Term 37988 - 38030 9.7 + Prom 38059 - 38118 15.8 35 19 Tu 1 . + CDS 38151 - 39095 786 ## EF0711 hypothetical protein + Term 39100 - 39135 6.7 - Term 39084 - 39127 11.0 36 20 Op 1 25/0.000 - CDS 39140 - 40867 2301 ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) 37 20 Op 2 . - CDS 40867 - 41133 386 ## COG1925 Phosphotransferase system, HPr-related proteins - Prom 41161 - 41220 5.7 38 21 Tu 1 . - CDS 41304 - 41495 367 ## EF0708 hypothetical protein - Prom 41623 - 41682 6.2 39 22 Tu 1 . + CDS 41495 - 41671 94 ## EF0707 hypothetical protein + Prom 41706 - 41765 2.8 40 23 Tu 1 . + CDS 41797 - 44037 1680 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 44045 - 44086 4.2 + Prom 44069 - 44128 11.1 41 24 Tu 1 . + CDS 44232 - 44546 450 ## EF0705 hypothetical protein + Term 44553 - 44592 5.1 - Term 44531 - 44587 7.2 42 25 Op 1 . - CDS 44589 - 45659 1018 ## EF0704 putative lipoprotein 43 25 Op 2 . - CDS 45726 - 46373 758 ## COG2323 Predicted membrane protein 44 25 Op 3 . - CDS 46389 - 46832 428 ## EF0702 hypothetical protein - Prom 46863 - 46922 6.1 45 26 Op 1 . - CDS 47316 - 47810 334 ## gi|229546538|ref|ZP_04435263.1| hypothetical protein HMPREF0349_1756 46 26 Op 2 . - CDS 47818 - 49086 748 ## PSM_A2062 adenylate/guanylate cyclase - Prom 49145 - 49204 9.2 - Term 49110 - 49159 11.5 47 27 Op 1 . - CDS 49248 - 49442 142 ## gi|229546536|ref|ZP_04435261.1| hypothetical protein HMPREF0349_1754 48 27 Op 2 . - CDS 49423 - 50427 728 ## LKI_07470 hypothetical protein 49 27 Op 3 . - CDS 50474 - 52222 774 ## COG1479 Uncharacterized conserved protein - Prom 52384 - 52443 7.6 + Prom 53055 - 53114 10.2 50 28 Op 1 . + CDS 53141 - 53437 310 ## gi|229546533|ref|ZP_04435258.1| hypothetical protein HMPREF0349_1751 + Prom 53546 - 53605 7.6 51 28 Op 2 . + CDS 53625 - 54365 119 ## gi|256854436|ref|ZP_05559800.1| predicted protein + Term 54396 - 54450 4.5 - Term 54384 - 54437 8.1 52 29 Op 1 . - CDS 54474 - 55322 439 ## COG0582 Integrase - Prom 55374 - 55433 2.5 53 29 Op 2 . - CDS 55457 - 57031 1975 ## COG4108 Peptide chain release factor RF-3 - Prom 57070 - 57129 6.3 - Term 57150 - 57198 10.2 54 30 Op 1 1/0.167 - CDS 57205 - 58584 1713 ## COG1253 Hemolysins and related proteins containing CBS domains - Prom 58604 - 58663 3.9 55 30 Op 2 . - CDS 58759 - 59904 1378 ## COG0628 Predicted permease - Prom 59938 - 59997 5.0 + Prom 59960 - 60019 6.3 56 31 Tu 1 . + CDS 60049 - 60480 563 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 60504 - 60558 20.1 - Term 60490 - 60544 20.1 57 32 Op 1 . - CDS 60568 - 61101 434 ## COG3557 Uncharacterized domain/protein associated with RNAses G and E - Prom 61229 - 61288 5.0 58 32 Op 2 . - CDS 61290 - 62267 1077 ## COG3684 Tagatose-1,6-bisphosphate aldolase 59 32 Op 3 7/0.000 - CDS 62264 - 62725 622 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 60 32 Op 4 19/0.000 - CDS 62752 - 64170 1807 ## COG1299 Phosphotransferase system, fructose-specific IIC component 61 32 Op 5 . - CDS 64175 - 65101 1133 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) - Prom 65160 - 65219 6.4 + Prom 65167 - 65226 11.7 62 33 Tu 1 . + CDS 65279 - 66025 469 ## COG1737 Transcriptional regulators + Term 66047 - 66094 6.1 - Term 66035 - 66081 12.2 63 34 Op 1 5/0.000 - CDS 66085 - 66729 974 ## COG0220 Predicted S-adenosylmethionine-dependent methyltransferase 64 34 Op 2 1/0.167 - CDS 66802 - 67581 823 ## COG0510 Predicted choline kinase involved in LPS biosynthesis - Prom 67629 - 67688 6.9 - Term 67779 - 67839 -0.1 65 35 Op 1 7/0.000 - CDS 67868 - 68920 855 ## COG4473 Predicted ABC-type exoprotein transport system, permease component 66 35 Op 2 . - CDS 68922 - 69659 262 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 67 35 Op 3 . - CDS 69643 - 69798 56 ## gi|315031405|gb|EFT43337.1| ABC transporter, ATP-binding protein + Prom 69712 - 69771 5.7 68 36 Op 1 . + CDS 69873 - 70298 510 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases 69 36 Op 2 . + CDS 70299 - 70643 311 ## EF0686 hypothetical protein Predicted protein(s) >gi|307679013|gb|GL456784.1| GENE 1 40 - 750 777 236 aa, chain - ## HITS:1 COG:mlr4962 KEGG:ns NR:ns ## COG: mlr4962 COG4420 # Protein_GI_number: 13474144 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Mesorhizobium loti # 32 225 92 285 307 167 45.0 1e-41 MKQSKNKQVVIGESTKKNIYLQDIEQETQAFILQNNPQLTAESMITLAELLNYRLDYMKQ LVANDSEKIQQLNELVVQHIKEDKLISNNMNEKMEKKLTFGQRAADTIAKFGGSWVFIGF FCFVLIAWIVINSTTLLGQPFDKYPYILLNLALSCLAAIQAPIIMMSQNRQEARDREQAN NDYKINLKAEVEINLLHEKMDYIINNQLENLVKIQNIQIELLGELQEQLAATSEKE >gi|307679013|gb|GL456784.1| GENE 2 849 - 2015 950 388 aa, chain - ## HITS:1 COG:BS_pbpX KEGG:ns NR:ns ## COG: BS_pbpX COG1680 # Protein_GI_number: 16078758 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Bacillus subtilis # 74 379 85 386 391 143 28.0 4e-34 MRKRHAKKRHGGVNWLFIVCLLVVIGGSGYLIKTFFFTRDSQVSQESKVVLEEDRRSDNY ANLTKEIVAPDSGELDQKIQETNYIGSALIIKDDQVLVNKGYGFANFEKQQANTPNTRFQ IGSIQKSFTTTLILKAIEEGKLTLDTKLATFYPQIQGAEDITISDMLNMTSGLKLSAMPN NIVTDEEIIQFVKQNTIQVNKGKYNYSPVNFVLLAGMLEKMYQRTYQELFNNLYHKTAGL KNFGFYETLLEQPNNSTSYKWTEDNSYNQVLSIPAASFAHEFGTGNVDMTTGDLYWYLHQ LMSGHLVSTALLQKLWTSSQQSSYHGGIYVHDNYLRLHGVEAGQQALVLFSKDMKTGVIL LTNCVNPAKYKELIGSLFHDVTNLPVKF >gi|307679013|gb|GL456784.1| GENE 3 2168 - 2548 566 126 aa, chain - ## HITS:1 COG:SA1340 KEGG:ns NR:ns ## COG: SA1340 COG0346 # Protein_GI_number: 15927090 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Staphylococcus aureus N315 # 7 120 6 121 123 81 40.0 3e-16 MFSNQVKIMLYVNNVEESSQFWQTFGFVEKEREEVDGTLVVEIAPSESAEAIIVLYDLAF IQKHSPEVAGNTPSLMFASDDIIGLYKKMQEAGVTVGEMVQLPTGLVFNFADNDDNYFAV MGQESK >gi|307679013|gb|GL456784.1| GENE 4 2681 - 4072 1986 463 aa, chain - ## HITS:1 COG:BS_yhcL KEGG:ns NR:ns ## COG: BS_yhcL COG1823 # Protein_GI_number: 16077978 # Func_class: R General function prediction only # Function: Predicted Na+/dicarboxylate symporter # Organism: Bacillus subtilis # 1 461 1 460 463 424 57.0 1e-118 MTTFITVLVILAFIAVLFGFYQMQKKHLKFSTRVFSALGVGIVLGAIIQFAFGTDSKITT QSMEWIGIVGNGYVAFLQMLVIPLVFVSIVGAFTKMKESNKLGKISFNVLATLLGTTAVA ALVGIGTTLAFGLQGAKFTQGAAETSRIAELATRQDAIQDLTIPQQIVSFIPKNVFADFA GTRPMSTIGVVIFAAFVGVAYLGVRRKAPKEAEFFANLIDSLYKITMRIVTLVLRLTPYG VLALMINVVATSDFVAIINLGKFVLASYVALIIVFAIHMLILITLKVNPVTYLKKVFPVL SFAFTSRSSAGALPLNIETQTKALGVDDATANFAGSFGLSIGQNGCAGVYPAMLATIVAP TVGIDVFSLQFILMLVAVVTISSFGVAGVGGGATFASLIVLGAMNLPVAIVGLVISVEPL IDMARTAVNVNDSMVAGVLTSARIHELDRDVLNDRDVVLDANI >gi|307679013|gb|GL456784.1| GENE 5 4367 - 4702 498 111 aa, chain + ## HITS:1 COG:no KEGG:EF0743 NR:ns ## KEGG: EF0743 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 111 1 111 111 211 98.0 6e-54 MQKICWILSVNRDGAMLYVGSPANGGPWLFSNKEQQNIKAFFQPTYEIDFISYDVLSEEV PEAAFILYNEMLAPYLPEKITKVGQPIAYVDIATKNYEQFKKALVAKSSQE >gi|307679013|gb|GL456784.1| GENE 6 4749 - 5135 621 128 aa, chain - ## HITS:1 COG:SP1558 KEGG:ns NR:ns ## COG: SP1558 COG4835 # Protein_GI_number: 15901401 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 122 5 128 128 92 44.0 1e-19 MEIKRQQEIVEAYHYDMRVPDSEVETDLRVSFSPIEVEEENYPENSSALVARLEFRIVFD EFVLSGAISQINHIIDRKIEKQEDISQEEVDELVRPLFSIVERLSYEVTEIALDRPGVQL NFQQSEEA >gi|307679013|gb|GL456784.1| GENE 7 5248 - 5679 219 143 aa, chain - ## HITS:1 COG:no KEGG:EF0741 NR:ns ## KEGG: EF0741 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 143 1 143 143 240 96.0 1e-62 MGQIWFERILRWRKKAQRFLQGRYARFDELNRTLLLTSVVLALINIFTGYLWVRLLILIT VAYVYYRFFSKHIHPRLNENQRFILRKQRLMQKVHAFRKRHLTQKRYRYFKCPKCQQSLR APKGRGTIKVTCSNCRNQFIKKV >gi|307679013|gb|GL456784.1| GENE 8 6029 - 6673 981 214 aa, chain - ## HITS:1 COG:L93481 KEGG:ns NR:ns ## COG: L93481 COG1428 # Protein_GI_number: 15672477 # Func_class: F Nucleotide transport and metabolism # Function: Deoxynucleoside kinases # Organism: Lactococcus lactis # 1 213 1 213 217 293 71.0 2e-79 MAVIVLAGTIGAGKSSLTALIANRLGSEAFYESVDDNEVLPLFYAEPEKYAFLLQIYFLN KRFDSIKQALTHENNVLDRSIYEDSLLFHLNADLGRANETEVKVYDDLLQNMLQELPYAA HKKRPDLLVHIRISFPKMLERIKKRGRPYEQIETDPTLYDYYQMLNERYDQWYEDYDESP KIQIDGDKYDFVEDPEACQYVLALIEKKIEELER >gi|307679013|gb|GL456784.1| GENE 9 6682 - 7380 669 232 aa, chain - ## HITS:1 COG:PM1838 KEGG:ns NR:ns ## COG: PM1838 COG3201 # Protein_GI_number: 15603703 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinamide mononucleotide transporter # Organism: Pasteurella multocida # 1 225 1 226 234 88 29.0 8e-18 MNKNFLVNDFKGWETRSYLFLALMVGVQLIAFAINPSNWITLVGGLAGIICVNLIAQGKV SNYIFGLISAVIIGYFGLVTRVYAEVLLQSFYIIMDITGLYAWLRASEDGSGQVTEVKVL KGIQWLYAFFTWLLIGVAAYILLGFVNDAQQTLDAITFSVSATGMLLMIKRYQSQFVFWL LGNIFSILLWFRVGTHAGGDYAIFVMYCMYTFNSIFGMFNWLKIKNKMEKNR >gi|307679013|gb|GL456784.1| GENE 10 7935 - 9521 1885 528 aa, chain - ## HITS:1 COG:lin0842 KEGG:ns NR:ns ## COG: lin0842 COG0154 # Protein_GI_number: 16799916 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases # Organism: Listeria innocua # 29 508 141 631 639 273 38.0 5e-73 MSKFLKVIGIIAVLLVIMGAAAYWFILKKFTPEAETPAMYNQERIVKTIEDQLKETDVQK ARTKAPLIIEKNITELQQAIADGALTYEELTAFYLDRILQFDQIDNGMNSISEINPQAIK EAKAFDQQASQTPKKPLYGIPVTLKENINTTNMISSAGAYALRTFKPKEDAEVVKKLTEA QALILGKVNLSELANYMSMKAPSGYSSKHGQTLNPYGPLKITPSGSSSGSGASVTMNIGA FSLGTETMGSIVSPASHQSVVGFKPTHSSVSGEGVLPLAPSLDTVGPIARSVVDAAQGYN AFKKDTVPSIDSTKFTKNNLQGQRIGLLEMPSAEEEFATAKKALQKAGAEVIPVTPDMEG IDGGKVISNEFKFALEEFAKRYDLPFKTLEELIAYNQQDKKVRAKYGQDLLEADVKKKQP DKEIIQTTIKKAQQTFDALLKKQQLDGYAFIDSEGTGLSAVAGYPELTVPLAKNSEGQPY GLTFTQTANKEQTLFEQAYSFEQSTKGRIVLSDNELLANSKKINRDEQ >gi|307679013|gb|GL456784.1| GENE 11 9718 - 10647 1193 309 aa, chain - ## HITS:1 COG:yqeA KEGG:ns NR:ns ## COG: yqeA COG0549 # Protein_GI_number: 16130776 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Escherichia coli K12 # 3 309 4 310 310 300 53.0 3e-81 MSKIVIALGGNALGNSSKEQLAKAQTAAKSIVDLIEQGHQVVIAHGNGPQVGKIRLAFEE TSQSPEDVVPFPECTAMSQGYIGYHLQQAIDEELVARNLGEQPVVTLITQVVVDPKDPAF TKPTKPIGGYYDEETAKQLMAETGNVYQEDAGRGWRRVVPSPKPVDIYEKVSLRTLVDAG QIVIACGGGGVPIAYDGPVYHGVDAVIDKDFAAAKMAELIEADVFVVLTAVEHVFVNFGQ ANQQALTDVTVTAMQQYIEENQFAPGSMLPKVEAAISFAESKPNRQAIIGLLELASEAIK GESGTRITQ >gi|307679013|gb|GL456784.1| GENE 12 10659 - 11756 1105 365 aa, chain - ## HITS:1 COG:L136332 KEGG:ns NR:ns ## COG: L136332 COG2957 # Protein_GI_number: 15673679 # Func_class: E Amino acid transport and metabolism # Function: Peptidylarginine deiminase and related enzymes # Organism: Lactococcus lactis # 1 364 1 364 366 654 83.0 0 MAKRIVGSTPKQDGFRMPGEFEPQEKVWMIWPERPDNWRDGGKPVQEAFTNVAKAISQFT PMNVVVSQQQFQNCRRQLPPEITVYEMSNNDAWVRDCGPSFVINDHGEIRGVDWTFNAWG GLVDGLYFPWDQDDLVAQKICEIEHVDSYRTDDFVLEGGSFHVDGQGTVLTTEMCLLSEG RNPQLSKEAIEQKLCDYLNVEKVLWLGDGIDPEETNGHVDDVACFIAPGEVACIYTEDQN SPFYEAAQDAYQRLLKMTDAKGRQLKVHKLCCPVKNVTIKGSFKIDFVEGTMPREDGDIC IASYMNFLITNDGVIVPQYGDENDRLALEQVQTMFPDKKIVGVNTVEVVYGGGNIHCITQ QEPKR >gi|307679013|gb|GL456784.1| GENE 13 11749 - 13125 1327 458 aa, chain - ## HITS:1 COG:L138484 KEGG:ns NR:ns ## COG: L138484 COG0531 # Protein_GI_number: 15673681 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Lactococcus lactis # 3 448 4 449 466 581 73.0 1e-165 MEGKKKFSLTSAILSVICVVFVAEAAAPVAAIGNSQFFWWIFLLIAFLLPYGLISSELGT TYIGEGGIYDWVTKAYGHRWSARVSWYYWINYPLWLASLAVMTPELLTTITGIKFSTPMM IIVELIFTWIVVWISFYPVSDSIWILNGAAVIKMVLAVLIGGLGLYVALTKGVANEFTLK SMLPTFDLRSLSFISVIIFNLLGFEVICTFADDMENPKKQIPQAIVAAGLVIAAIYIFSA FGIGVAIPTDQISTGSGMMDSFKLLTGSTEGWFIMLMAFLFLLTLFGNMISWSLGVNNTA CYAAENGDMPKFFEKRSKKNDMPIGAALMNGIVASVVIVLAPILPNQDLFWAFFSLNVVL FLLSYIPVFPAFYKLRKIDPDTPRPFKVNGKPGFLKVLVVLPMIMIIISLIFTAVPLDFS PAALNEKLPITIGAIIFILFGEVIIYVKKIKKGTKENG >gi|307679013|gb|GL456784.1| GENE 14 13192 - 14211 1212 339 aa, chain - ## HITS:1 COG:L0113 KEGG:ns NR:ns ## COG: L0113 COG0078 # Protein_GI_number: 15673682 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Lactococcus lactis # 2 334 6 338 340 554 79.0 1e-157 MKRDYVTTETYTKEEMHYLVDLSLKIKEAIKNGYYPQLLKNKSLGMIFQQSSTRTRVSFE TAMEQLGGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVERHHSIVDLANCATIP VINGMSDYNHPTQELGDLCTMVEHLPEGKKLEDCKVVFVGDATQVCFSLGLITTKMGMNF VHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDASSVEGADFLYTDVWYGLYEAELSEE ERMKVFYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVTDEVIDGKNSICFDEAENRLTS IRGLLVYLMNDYEAKNPYDLIKQAEAKKELEVFLDTQSI >gi|307679013|gb|GL456784.1| GENE 15 14490 - 15455 500 321 aa, chain + ## HITS:1 COG:L0226 KEGG:ns NR:ns ## COG: L0226 COG2771 # Protein_GI_number: 15673683 # Func_class: K Transcription # Function: DNA-binding HTH domain-containing proteins # Organism: Lactococcus lactis # 1 315 1 325 328 209 41.0 8e-54 MTFVFIYNILLIILYSFTSTFTLNLYLKNKQPIFLLLLFLMVIFICDNVIVYMTEFINSF ATEYNQTFMTAPFLKTIIFICCNFAYLAIINTISGRPFKNYQFVWLFLIGLWMLAIPFSQ NSALKVWLYYLPNQLFLIYLGCYALYQLRIDPLSALAKKYLRFIGWLSIGFGVAILLEDT FVIFNIDQYSDIVFKINNRNVSEDIYTIILSIAIIYFCNRDFPLSVLEKDAAKLEENQSD EPVLLAPFCDAYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNK RAEVFVSYQLFSQQQTEHLAR >gi|307679013|gb|GL456784.1| GENE 16 15498 - 15815 443 105 aa, chain - ## HITS:1 COG:no KEGG:EF0730 NR:ns ## KEGG: EF0730 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 105 1 105 105 179 100.0 2e-44 MEYVTTLEELEEKITDNRLQAVFLTAKNCSVCTVDKPIVEKIATKYEFPTYIAEADKSPE IIGQLNAFSAPTIILYYEGKEIHRQAKIINFQEIEKRVRQVQENS >gi|307679013|gb|GL456784.1| GENE 17 15955 - 16083 219 42 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227517695|ref|ZP_03947744.1| 30S ribosomal protein S9 [Enterococcus faecalis TX0104] # 1 42 1 42 42 89 100 6e-17 MNEKEKMLELIKKKQGGGRSKKMETPKNDRKNMRKGPKIFNK >gi|307679013|gb|GL456784.1| GENE 18 16084 - 17457 1737 457 aa, chain - ## HITS:1 COG:BH0687 KEGG:ns NR:ns ## COG: BH0687 COG2265 # Protein_GI_number: 15613250 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Bacillus halodurans # 5 452 7 454 458 486 54.0 1e-137 MKNYPVKKNDVIEVEIIDLTHEGLGVAKVDHYPLFIENALPGEKLEIKVLKTGKSFGYGK VLTVLKSSEQRVPVKDENFTKVGISPLQHLAYGAQLSFKTQQVENVMQRVAKLPEVPVLP TIGMNDPWHYRNKAQIPVRKIDNQLQTGFFRKNSHDLISMEHFYIQDPEIDAAIVKIRDI MRKYSVKPYNESDNTGNLRHIVVRRGYHTGEMMVVLITRTPKLFPISKIVPDILEAIPEV VSIVQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKV KEYAALTGNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATF TAGLAEELLPKLVEKGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARD IALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTKAVD >gi|307679013|gb|GL456784.1| GENE 19 17657 - 18745 1321 362 aa, chain - ## HITS:1 COG:SPy0752 KEGG:ns NR:ns ## COG: SPy0752 COG1597 # Protein_GI_number: 15674801 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Streptococcus pyogenes M1 GAS # 3 348 6 337 340 407 61.0 1e-113 MKKARVIYNPTSGKELIKKNLADILSILEECGYEASAFATTPEENSARNEAHRAARAGFD LLVAAGGDGTINEVVNGIAPLKRRPKMAIIPAGTTNDYARALKIPRDNIVKAAEVIKKNQ TVKMDIGQAGKNYFINIAAGGHLTELTYEVPSELKSIFGYLAYLAKGAEMLPRVKPIKMR MTYDEGVYEGNASMFFLGLTNSVGGFEQIVPDAKLDDGKFSLIIVKTANIFEILHLVALM LNGGKHVEDHRLIYTKTSYLHAETLEKNNKMMINLDGEYGGDAPMTFKNMHQHIEIFANG DALPSNAIMGSVLTGSDEIVVESEDEEEEAYNEASKEFVKEVERLTDEDIDGDGKIAEKE KH >gi|307679013|gb|GL456784.1| GENE 20 18764 - 20194 1802 476 aa, chain - ## HITS:1 COG:lin1866 KEGG:ns NR:ns ## COG: lin1866 COG0064 # Protein_GI_number: 16800932 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) # Organism: Listeria innocua # 1 476 1 476 476 725 77.0 0 MNFETVIGLEVHVELKTNSKIFSSAPAHFGAEPNSNTNVVDWSYPGVLPVMNKGALEFGM KAALALNCEISKETHFDRKNYFYPDNPKAYQISQFDQPIGHDGWIEIEVEGKKKKIRIER VHLEEDAGKNIHGTDGYSYVDLNRQGTPLIEIVSEADMRSPEEAYAYLEALRSIIQFTEV SDVKMEEGSMRCDANISLRPYGQEEFGTKAELKNLNSMNFVKKGLAYEEKRQAKVLLSGG EIQQETRRFDEATSTTLLMRVKEGSSDYRYFPEPDVPRFSIDDEWIEKVRASLPEMPASR RARYISELGLPEYDAMVLTLTKEMSDFFEATLANGADAKQASNWLMGEVSAYLNSEKVEL ADTKLTPENLAGMITLINDGTISSKIAKKVFKELIENGGDAKEVVEAKGLVQLSDPAQLL PMINEVLDNNQQSIDDFKNGKDRAVGFLVGQIMKATRGQANPGVVNKLLQEELSKR >gi|307679013|gb|GL456784.1| GENE 21 20194 - 21663 399 489 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 [Phaeobacter gallaeciensis BS107] # 1 472 1 452 468 158 28 9e-38 MEKLYDKSLTELHDLLVSKEITAVDLTEETLNRIQDTEEQLGSFITVSEEKAMALAKAID LKGITESNPLAGIPIGIKDNIVTKDILTTAGSKMLHNFDPIYDATVMDKVYQADMIPVGK LNMDEFAMGGSTETSYFKKTKNAWDQTKVPGGSSGGSASAVAAGQVPVSLGSDTGGSIRQ PAAFNGIVGLKPTYGRVSRFGLIAFASSLDQIGPLTRNVKDNALALNAISGYDEKDGTSA GVSVPDFTADLTGDIKGMKIALPKEYLGEGVQPDVREAVLKAAETFKSLGATVEEVSLPH SKYGVAVYYIIASSEASSNLQRFDGIRYGYRSDNVQNLEDVYVNSRSEGFGTEVKRRIML GTFSLSAGYYDAHFKKAGQVRTLIKQDFENVFADYDLIIGPSTPTVAFGLGENINDPITM YMNDILTIPVNLAGLPGMSIPAGFSEGLPVGLQIIGKHFDEHTMYKAAYAFEQATDFHTK KPVILGGND >gi|307679013|gb|GL456784.1| GENE 22 21663 - 21968 439 101 aa, chain - ## HITS:1 COG:L0475 KEGG:ns NR:ns ## COG: L0475 COG0721 # Protein_GI_number: 15672144 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit # Organism: Lactococcus lactis # 3 97 4 98 101 108 64.0 3e-24 MAITEEQVKHVAKLSKLSFSEEELADFTNQLDKIIDMVELLEEVDTTGVPFTSNVNESIN VMREDVATPGMDRKELMRNVPESENGYIKVPAIMDNGEAGA >gi|307679013|gb|GL456784.1| GENE 23 22286 - 22396 139 36 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSVEAALGLMIGFATLVVTIIFGILALVLDNKNNRS >gi|307679013|gb|GL456784.1| GENE 24 22550 - 24580 2303 676 aa, chain - ## HITS:1 COG:lin1870 KEGG:ns NR:ns ## COG: lin1870 COG0272 # Protein_GI_number: 16800936 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Listeria innocua # 10 671 2 663 671 801 59.0 0 MEQQPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI TPDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGKPVAYCCELK IDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPISVEVRGECYMPK QSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMKAKTQ FEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFVLQDE LGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTVSRASLH NADFIQMKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEMPTHCPICHSELVHLD EEVALRCINPKCPAQIKEGLNHFVSRNAMNIDGLGPRVLAQMYDKGLVKDVADLYFLTEE QLMTLDKIKEKSANNIYTAIQGSKENSVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSR ATAEEIVALDSIGETIADSVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPF KDKTVVLTGKLTQYTREEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVS VWNEQEMVDALDASHF >gi|307679013|gb|GL456784.1| GENE 25 24706 - 26964 2529 752 aa, chain - ## HITS:1 COG:SPy1267 KEGG:ns NR:ns ## COG: SPy1267 COG0210 # Protein_GI_number: 15675225 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Streptococcus pyogenes M1 GAS # 7 751 4 771 772 886 59.0 0 MTQKHALVQGMNPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILA ITFTNKAAKEMKERVNKLLETGGEDVWVSTFHSMCVRILRRDVDQIGYNRNFTIIDPSEQ KTLMKRILNDLNIDSKKYDPRSILGTISNAKNELQTPEKVAEMQGSLYEEIVAKCYEAYQ KELRKNQCMDFDDLIMNTIRLFNEQPDTLAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAA RFKNLCVVGDADQSIYGWRGADMQNILDFEKDYPDASVILLEQNYRSTKNILAAANDVIK NNRNRREKELWTENIDGEKIVYYRGDTERDETQFIVSQIQKEMRENDRIYGDFAVLYRTN AQSRVVEEMLLKSNIPYTMVGGHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRG IGKSSIEKLRLFADTHGWALLEAAQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTIT ELVKETLQRSGYREALMAQNNLESQARLENLDEFLSVTQEFDKRFEAQNNDDPNGEETKL ADFLTDLALVSDLDNLEESSSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRAMLEESE LEEERRLAYVGITRAEEALFLTNAYSRTLYGRTQYNRPSRFLEEIEAERLMKQGAAANLQ KAPARTFDPKVFKPSASKPAYTQPATKSVSNKVASGGEKVSWQAGDKVQHKAWGVGTVVR VGGSAKDLELDIAFPEKGIKRLLAAFAPIEKI >gi|307679013|gb|GL456784.1| GENE 26 27129 - 28688 1425 519 aa, chain + ## HITS:1 COG:SP1157 KEGG:ns NR:ns ## COG: SP1157 COG0038 # Protein_GI_number: 15901022 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Streptococcus pneumoniae TIGR4 # 36 492 42 499 516 326 46.0 6e-89 MNNDVHEIKQLDGTRIGFILKGIVVGILVGFVVSLFRLGIEKIGEQVVHLYQTFHEKPFW MIPWFLFSLVLAYLLGRLIKSEPAIKGSGIPQVEGQLQGQLEIHWFPVLWKKFIGGILAI SPGLFLGREGPSIQLGAVVGQGYSQWRQSTKSEEKILISSGASAGLAAAFNAPIAGLLFV LEEVHHSFSPLVWLTSFSAAISANFVSLHFFGLQPVLYIGPVKSLPLEYYWTLVLLGVLL GLLGWIYQKTLLSLPKVYGKIKGLSSNYYGFVPFILILPIGYFFPHLLGGGNQIVLALGN QPATIWALVGLLVLRFVFSMVSYGSNLPGGIFLPILTLGAIIGTLYGSLLVQYVGMDPIF VKNFLIFSMAGYFTAIGKAPLTAIILVTEMVGNFSHLMSLGVVALVSYITIDSLGGKPIY ESLLERLVPSKVSNIRGHKTIIELPITAESSLDDTMVRDFVWPKQMLLTSIRRGESEILT HGDTVMHVGDVLIILTDEKLAYQVKKEIYQKTLPNDLVN >gi|307679013|gb|GL456784.1| GENE 27 28824 - 29576 637 250 aa, chain + ## HITS:1 COG:lin2431 KEGG:ns NR:ns ## COG: lin2431 COG1349 # Protein_GI_number: 16801493 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Listeria innocua # 1 250 1 250 250 221 48.0 8e-58 MLTEERHQKILQLLDQKSVVKSQELASLFNASESTIRRDLQELEDANLLERIHGGAKRIL NLGFEQNMTEKSIKNTHEKQKIASLAASCVQDDDMIYLDAGSTTLEMIPFLVGKQIHVVT NSVHHAAKLSDMEIPTIMLGGTLKLSTKAIIGATSMEQLQHFRFNKAFLGTNGAHLEFGL TTPDPEEAALKALAIHQAETAYVLLDHTKFNEVTFTKVEELESVTLLTDYCPAESLQGFQ QKTILMEANK >gi|307679013|gb|GL456784.1| GENE 28 29573 - 30490 988 305 aa, chain + ## HITS:1 COG:lin2430 KEGG:ns NR:ns ## COG: lin2430 COG1105 # Protein_GI_number: 16801492 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Listeria innocua # 1 304 1 304 307 367 63.0 1e-101 MIYTVTLNPSIDFIVHVDHLQIGDLNRMTNDFKLPGGKGINVSRILKRMETESTALGFLG GFTGSFIADWLKKEEIQTNFTPVSADTRINIKLKSDTETEINGLGPALTNEEIQELKQAV SRVQAGDIVVLSGSTPASLRKGFYEELIQIVKEKGAEFVIDTTGEDLMNALSQKPLLVKP NNHELAELYHTTFTSVEDILPYGHRLLEEGAQHVIISMAGDGALLFTTEGVYRSNVLKRP LKNSVGAGDSMIAGFIGNFSKTQDPLEAFKWGVACGSATAFSDDLASEDFIQELIHEVTI EKISE >gi|307679013|gb|GL456784.1| GENE 29 30514 - 32436 2481 640 aa, chain + ## HITS:1 COG:SPy0855_3 KEGG:ns NR:ns ## COG: SPy0855_3 COG1299 # Protein_GI_number: 15674888 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Streptococcus pyogenes M1 GAS # 299 634 2 358 360 422 65.0 1e-117 MNINDLLIKDVMIMDLQATDKKGAIDEMVQKLYDGGRISDIDTYKEGILKREAQTSTGLG DGIAMPHAKNSAVKEPTVLFAKSKKGVDYEALDGQPTYLFFMIAAPEGANDTHLQALAAL SRLLIDPEFVGKLKEAETPEAVQALFQAAEDQKEAEEKAEQEQTTPAPESNRKYIIAVTA CPTGIAHTYMAEDALKKKAKEMGVDIKVETNGSEGIKNRLTAEDIARADGVIVAADKKVE MNRFDGKKLVNRPVSDGIRKTEELINLAISGEAPTFHGSDSAASDQEDSAEGSIGSRIYK DLMNGVSHMLPFVIGGGIAIALSFMIDQFIGVPQDQLANLGNYNDVASWFNQIGGAAFGF MLPVLAGFIASSIGDRPGLVAGFAAGALANAGGAGFLGALIGGFLAGYVVVLLRKVFKGL PKSLDGIKTILFYPVFGLIITGLLMLVINIPMKAINDALNHFLLGLDGTNAALLGALLAG MMAIDLGGPVNKAAYVFGTATLASTVAEGGSVVMASVMAGGMVPPLAIFVATRLFKNKFT KDQQDAGLTNIVMGLSFVTEGAIPFAAADPLRVIPSFVVGSAFTGALVGAFGIKLLAPHG GIFVVFLLSNPLLYLLFILIGAIISGIVYGLLKKPVEVPA >gi|307679013|gb|GL456784.1| GENE 30 32483 - 33145 691 220 aa, chain - ## HITS:1 COG:no KEGG:EF0716 NR:ns ## KEGG: EF0716 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 220 1 220 220 402 99.0 1e-111 MDKNYSKIKYGLVVFGILCLTYNLWEFFTAKYSTKQGVTFVIECLLGIGLIFLPDLVNKF LKIIMPPTIVYFYWFFLFISVFLGTSLHMISIISFWDKILHFVSPMLLTAVGYGIAGFLL KKTKYADVSPWLFLLFGFAFAGLCGVFWEFWEFICDSLGNMNLQRYNMSNGQPFIGRAAL MDTMGDLFTNTLGAFVMGVYTYIRSKGNPEYLENYAMKRK >gi|307679013|gb|GL456784.1| GENE 31 33257 - 34540 2023 427 aa, chain - ## HITS:1 COG:SPy1896 KEGG:ns NR:ns ## COG: SPy1896 COG0544 # Protein_GI_number: 15675709 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) # Organism: Streptococcus pyogenes M1 GAS # 1 427 1 427 427 456 63.0 1e-128 MSAKWEKKGTNDGVLTFSIEQAVIEKGLTQAFNKVKKNLNVPGFRKGKVSRTVFNRMYGE EALYEDALNAVLPEAYEAAVLEAGIEPVAQPKIDVESMNKGEDWVITAEVTVKPEVKLGE YKNLTVSKQDREVTDEDVEARLKREQESQAELVIKEDAAAENGDTVVIDFEGFLGDEAFE GGKGENYSLELGSNSFIPGFEDQLVGKKAGEEVEVNVTFPEDYQAEDLAGKEAVFKVTVH EVKAKELPELDDEFAKDVDDSVESLDELKEKFRKELTEAKEAAAEEAKDEEAIRLAVENA EIVELPHVMVHDEVHRSMDEFLNNMQRQGISPEMYYQLTGSTEEDLHKQFEGEAETRTKT NLVIEAVAKAENIEVTQEDIDAEVKDLAEQYNMPEAQVRKVLNNDMLEHDIRMKRAVETI TETAVEK >gi|307679013|gb|GL456784.1| GENE 32 34894 - 37179 1888 761 aa, chain + ## HITS:1 COG:no KEGG:EF0714 NR:ns ## KEGG: EF0714 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 761 3 763 763 1281 99.0 0 MNKFVWGIFSCIISWLFLSLTQPLIAHSETLNPTTHASTFSETFTSVSTEQQTTQATDIV EQETEQTHASSENDEPMAPTPASVSVGNSTLKSTLSTGTYNQDIITLSYEYSVTLIGLAI NDRPIIAIQLPTEISSQLDNDTLKQQDFLTLLTGTVSYPGTATQDIHSSTNGVSLSYSST YHSVYLTFPSSTLVLLPGTKWSAAISFDVGALYKRGISIPPALNGKDYPIRGTFTDVGTG LGAINIIIGNNTKTGVISKAQLSLGNYPVPQVTPAKLTQPNHLDTTVTGTIQQVQDPNYN YSVQLTLNRHDGTTTPIVVKGISVDAAGNFSTSLASPLEYGDTLSTIVFARSKTSTDYIQ SSPSADQSVNWSIQPVTNVVANAGSTQLSGKASQVSNGTYQVKVQINGGSIYTTSLDSNG HFQFANLPTFQGGETVSLWVQGLSNRTGLPLLTSSTVSQTVAYSVPQLTVTQIIERKNAQ GLWEAANSVVSGQIIRFTLTTRLTNQPATWMNQQLRATVPKGLSQLSAATLTKQSAAGLS TPIAGLQLLTDSSTGLPYWSYHNSLPADNFTEANTQFTLQYTATVTEEWINQFLLFSSTV TGNDGGGTPITPITKEQSLPTKNGTLRFVQMPTTVSFKNLPFPSKRTIYSPSTISAPFLI ADGRVAKTPWHLLVRESQPMHSTSTNKTIQQAFIYRKNGSDFPLSSLATEVYQYTATDDN NVEIPWNQQNGLFLSVAPDLNLTVKESYTAELQWILSDTPL >gi|307679013|gb|GL456784.1| GENE 33 37234 - 37848 483 204 aa, chain + ## HITS:1 COG:no KEGG:EF0713 NR:ns ## KEGG: EF0713 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 183 1 183 245 294 99.0 1e-78 MKKIVRISSILFVATPLMLLNSPKVEAAQVASIQSNADITFALDNTVTPPVNPTNPSQPV TPNPADPHQPGTAGPLSIDYVSNIHFGSKQIQAGTAIYSAQLDQVQNSTGDLISVPNYVQ VTDKRGLNLGWKLSVKQSAQFATSDSTPAVLDNASLTFLAATPNSTQLLSLAPLTVPVTL DPTLVPPLLLWRLPLFQQEWALGH >gi|307679013|gb|GL456784.1| GENE 34 37830 - 37973 113 47 aa, chain + ## HITS:1 COG:no KEGG:EF0713 NR:ns ## KEGG: EF0713 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 47 199 245 245 78 100.0 1e-13 MGTWTLAFGSGATAAQGIQLTVPATTKKVAAKQYKTTLTWILDDTPL >gi|307679013|gb|GL456784.1| GENE 35 38151 - 39095 786 314 aa, chain + ## HITS:1 COG:no KEGG:EF0711 NR:ns ## KEGG: EF0711 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 314 1 314 314 573 98.0 1e-162 MTFSVKAILPDNQRTKETSYFDLRVAPNQTQKLQIELTNQTANDITVLASANAAITNDNG LADYSHAETKKDPSAPFTFNEIAQLPKEIQLPKHSTKTVECQLILPEKPFNGYVLGGLYF EQKSDEQPAHSENGVAINNRFSYVVGVLLSETDEPVQPELSLNEVKTDQANGRNRVLMNL QNKQAAMIKKLQVDASLYYEKEAKPRYENHQESLTMAPNTNFNYRIDLKEQPFVPGNYTV KIKVNDGYQDYSWEKHLVIQEKEAKKYNATAVNLPPEKHTNFPWKLVSSITLVFLFILGS TIYYFKKKIRESQQ >gi|307679013|gb|GL456784.1| GENE 36 39140 - 40867 2301 575 aa, chain - ## HITS:1 COG:SP1176 KEGG:ns NR:ns ## COG: SP1176 COG1080 # Protein_GI_number: 15901041 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Streptococcus pneumoniae TIGR4 # 1 573 1 573 577 859 78.0 0 MSEMLKGIAASDGVAVAKAYLLVQPDLSFNKTSVEDTDAEATRLDDALAKSTEELQAIRD KAAQSLGEAEAQVFDAHLMVLSDPEMVGQIKQNIQDNKVNAEAALKEVTDMYIGMFEAMD DNAYMQERAADIRDVAKRILAHLLGVTLPNPSMINEEVIVVAHDLTPSDTAQLDRTYVKA FVTDIGGRTSHSAIMARSLEIPAIVGTKEITDKVKAGDILAVNGIIGDVIIDPTDAEKSE FEAEAKAYADQKAEWDKLKNAETVTADGKHVELAANIGTPKDLEGVHKNGGEAVGLYRTE FLYMDSSDFPTEEDQYQAYKAVLEGMEGKPVVVRTMDIGGDKELPYLTLPHEMNPFLGYR ALRISLSELGDGMFRTQMRALLRASVHGNLRIMFPMVATLKEFRAAKAIFEDEKQKLVNE GVEVSNDIQVGIIIEIPAAAVLADKFAKEVDFFSVGTNDLIQYTMAADRMNERVSYLYQP YNPSILRLIKNVIDAAHAEGKWAGMCGEMAGDQTAVPLLLGMGLDEFSMSATSILKTRSL MKRLDTTKMAELADRALKECDTMEEVVALVEEYTK >gi|307679013|gb|GL456784.1| GENE 37 40867 - 41133 386 88 aa, chain - ## HITS:1 COG:L120335 KEGG:ns NR:ns ## COG: L120335 COG1925 # Protein_GI_number: 15672099 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, HPr-related proteins # Organism: Lactococcus lactis # 1 88 1 88 88 115 76.0 3e-26 MEKKEFHIVAETGIHARPATLLVQTASKFNSDINLEYKGKSVNLKSIMGVMSLGVGQGSD VTITVDGADEAEGMAAIVETLQKEGLAE >gi|307679013|gb|GL456784.1| GENE 38 41304 - 41495 367 63 aa, chain - ## HITS:1 COG:no KEGG:EF0708 NR:ns ## KEGG: EF0708 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 63 1 63 63 108 100.0 8e-23 MAENPFVEKIASLKAGEISELIVEQNEFFQFRDAWISLPDRAEIVGEAGLNGRIIYRYQK EEE >gi|307679013|gb|GL456784.1| GENE 39 41495 - 41671 94 58 aa, chain + ## HITS:1 COG:no KEGG:EF0707 NR:ns ## KEGG: EF0707 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 58 1 58 58 90 98.0 2e-17 MISPLFLLNINSYSLLENGAIVCKKIESLPFFKQGLLLDSLTKNAIITSKVKNGQVVL >gi|307679013|gb|GL456784.1| GENE 40 41797 - 44037 1680 746 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 57 708 124 788 815 651 52 0.0 MICQNCQQNEATIHLYANVNGQRKQLDYCQSCYQKLKNQANNSPQNMGQDPFGFGSLDDL YRSLSRQMQQGNPYEQQTPPTQFGDGGNGGQPPRGGAGAGQGLLGEYGINITEAARQGDI DPVVGRDQEIKRVIEILNRRTKNNPVLIGEPGVGKTAVVEGLAQKIVDGDVPQKLLDKEV IRLDVVSLVQGTGIRGQFEERMQKLIEEITEAENVILFIDEVHEIVGAGAAGDGNMDAGN ILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVQVDEPTVAETITILHGLQKRYE DYHHVKYTDEAINAAANLSNRYIQDRFLPDKAIDLLDESGSKMNLTIQLVDPKTIDKKLA EAEQQKQQASAEEDFEKAAYYRDQINKLQAMKEKQISDEETPVITEKDIEAIVEQKTGIP VGDLKEKEQTQLKNLAVDLKAHVVGQDDAVDKVAKAIRRNRVGLGKQNRPIGSFLFVGPT GVGKTELAKQLAFELFGSEDSMVRFDMSEYMEKHSVSKLIGSPPGYVGYDEAGQLTEKVR RNPYSLILLDEIEKAHPDVLHMFLQILDDGRLTDAQGRTVSFKDTIIIMTSNAGTGAVEA NVGFGAAREGVTKSVLGQLNNFFTPEFLNRFDGIIEFKALSKENLMNIVSLMLEEVNSLL AKQKLHIEVPTEVKEKLVDLGYDPAMGARPLRRTIQEQIEDGIAEYYLDHPENHQLVAAL DNEGKIIVTGAQEVTKTETSTSDQAE >gi|307679013|gb|GL456784.1| GENE 41 44232 - 44546 450 104 aa, chain + ## HITS:1 COG:no KEGG:EF0705 NR:ns ## KEGG: EF0705 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 104 1 104 104 170 100.0 1e-41 MKLVNVTNSYKQLVNKQLENTDAYFVKVYSAGNTTAVYSEAAHHVEVLIMNKNRRIRPTE VKEILAKLLKRLPKEAYDPDEISIIELNHVTEVSVPLKVSLMEN >gi|307679013|gb|GL456784.1| GENE 42 44589 - 45659 1018 356 aa, chain - ## HITS:1 COG:no KEGG:EF0704 NR:ns ## KEGG: EF0704 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 356 1 356 356 617 99.0 1e-175 MKTKKIVVGLFCSMIILMGCQPDQRTEKMKESTEAEAVQVTSGASAATNATSVKQEEQTN TNDQPKESAAKVSYERNGHTFEVDAVSGATVEANNGQSGISPEEKAQKMYWSGRPEIGEV QGDYYHHEVVFDGGYTALIDVVVKDQQIQLVEFDERGPKNYYSEEWAGVTKRLSGYANFQ ANNARTDQSLVTVVNTMTFLENQMVAENRLDGAFQTAKGQSNSANNGYLPAARALAKEIK EPSKEHYTSLTEDFGEGLSGRLTVITLKDSGKITDLRYDEYFADTEEEIKDAKLKAYSRQ SKYFSKDYAQKSGENFKKEVDDLRKKAIEENKLVSPTNEEAWSENYQSLVKKITSQ >gi|307679013|gb|GL456784.1| GENE 43 45726 - 46373 758 215 aa, chain - ## HITS:1 COG:L163025 KEGG:ns NR:ns ## COG: L163025 COG2323 # Protein_GI_number: 15674091 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 1 209 1 209 211 319 80.0 2e-87 MQFYSPIIIKFALGIICLIVQINLMGKGNLAPTSAMDQVQNYVLGGIIGGVIYNDSITVL QFVLVLILWTLLVLILKFAKEHNRYVKQIVDGKPITLIKDGQVVVKECLKNGISANDLMF KLRANGIYEVQLVKRAVLEQNGQLTIVEYGDESIRYPIIVDGQANMDVLELIKKDEHWLL TQIQEQGFQRLQEIYLGEYLSGQLSLSPYEEKTIS >gi|307679013|gb|GL456784.1| GENE 44 46389 - 46832 428 147 aa, chain - ## HITS:1 COG:no KEGG:EF0702 NR:ns ## KEGG: EF0702 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 147 1 147 147 232 100.0 4e-60 MNFYGIEYLKSQSNLNDYLKYFFIFALLIGLVIVFSFYVRHQIQTKYRELSIIIFLSLLF VLGVQYSNYQLNQNQHSQSSQMVHFVEQVAQEKKVSPEKVYVNGTQLADGTIVKIDEVFY KMSLSTDQQSYTLQETYLLTPTIEIIK >gi|307679013|gb|GL456784.1| GENE 45 47316 - 47810 334 164 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229546538|ref|ZP_04435263.1| ## NR: gi|229546538|ref|ZP_04435263.1| hypothetical protein HMPREF0349_1756 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T8] hypothetical protein HMPREF9521_02931 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9509_03198 [Enterococcus faecalis TX0411] hypothetical protein HMPREF0349_1756 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T8] hypothetical protein HMPREF9509_03198 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9521_02931 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9496_02012 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9508_02504 [Enterococcus faecalis TX0312] # 1 164 1 164 164 285 100.0 7e-76 MASSKKDFVYSQNDYLNNYIQFADTKSAVFITVNGVLMGFLYTQIKDNMPFEFEKSKNLF LLASIGLLLVAYVFLFLVIFPRRSYRNGNGIVFWEDVTTYKDAESYKMKVSEIPQGSFEE VMIEQNYYLAKTATKKYKNLHWSFIFSIASYISVVVFSILNVLK >gi|307679013|gb|GL456784.1| GENE 46 47818 - 49086 748 422 aa, chain - ## HITS:1 COG:no KEGG:PSM_A2062 NR:ns ## KEGG: PSM_A2062 # Name: not_defined # Def: adenylate/guanylate cyclase # Organism: Pseudoalteromonas_SM9913 # Pathway: not_defined # 5 408 8 456 462 162 29.0 2e-38 MYNNYNNIERIFYKNLRKENLDNKLEKSVIHSRYMDSSQSIIVPENETLTIAKFPPNRFS EKIGTHPDFIDESLLPKTQYICSIFLDIKGSTRLALKYDLETVQKIKNAVLSTGIEIIRY FGGHIHRLQGDAIFAFTGHSKLLKSDAIIQAINAASVIQYMNQNILKKYFENVLGVSSLK IRIGIDFGDDDEVLWSKYGIDNINEVTVTSLHADLSSKLQNKASENSIMVGENVFSYLQL PDDLLSDIYIKGSSEEKDYYIMKHNSFNYKMKNFDWSKYLERIAHFESYEGDFQIKCYYL SENERRIPYYSEKALEKDTDIVYQIEASQSLLHKINSVEWTVSNSGIEASKEEELDYVVP KEAFTDEDNAVFRCKRHTAFNGLHYMICKIKAEGNITKNKYFSLYVNDNDLSKSYLKKAE LE >gi|307679013|gb|GL456784.1| GENE 47 49248 - 49442 142 64 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229546536|ref|ZP_04435261.1| ## NR: gi|229546536|ref|ZP_04435261.1| hypothetical protein HMPREF0349_1754 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T8] hypothetical protein HMPREF9498_01880 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9521_02929 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9509_03200 [Enterococcus faecalis TX0411] hypothetical protein HMPREF0349_1754 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T8] hypothetical protein HMPREF9509_03200 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9521_02929 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9498_01880 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9496_02014 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9508_02506 [Enterococcus faecalis TX0312] # 1 64 1 64 64 105 100.0 1e-21 MKESKIKTCKYPNCNKEVPSDKSLFCMEHSRSLKEKRNLVGTALGSVAILGVTTLANSII KKKI >gi|307679013|gb|GL456784.1| GENE 48 49423 - 50427 728 334 aa, chain - ## HITS:1 COG:no KEGG:LKI_07470 NR:ns ## KEGG: LKI_07470 # Name: not_defined # Def: hypothetical protein # Organism: L.kimchii # Pathway: not_defined # 1 328 1 327 334 321 52.0 2e-86 MKDFEIGLPKDASLLVNVTDKNLYNYDFTSYSLLPLQRIASKSIAVKIKNSLFSNISEMS LIENLSNQKETEYVARIPDFAKEKIDSGEWSFGVRKKTGETYAVIKDNLSGENKSFVTLD KKIVKELGVLPELSAIQGQLASISEQIEGLNQIIQRVEKGQYNDRYAGFFSSRQLVVEGL ASENESNKRELLISSIKIANETISKLMLSIHEDAALLIDSKTKSKDARRIDNLLQTSLGY LNSAVQLNLIAYTALGEKQSLFATLTNYHSFVKQVLMKENESGRTIAWLLDNAHVGDDGR IQELTNDLSTKIEVLIATYNNERTDVTENERIEN >gi|307679013|gb|GL456784.1| GENE 49 50474 - 52222 774 582 aa, chain - ## HITS:1 COG:Cj0008 KEGG:ns NR:ns ## COG: Cj0008 COG1479 # Protein_GI_number: 15791407 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Campylobacter jejuni # 4 581 3 580 583 304 35.0 3e-82 MERGFQPLITIKEAIENIDKNIYLLPAIQRKFVWSPEQIESLFDSIMRKYPINSLMLWQI TSDEIKNNYRFYSFLRKYKQRFGEMNEYYNSMGRTDNFFAVIDGQQRLNSLYIGLKGSYA VKLNHKRWVDNEDNFPPMKLYLNIKNTYKQETKIDKEYEFKFLRRDKVEKENKLGEKYWF EVGSILGLSDEKNRCSYLEKVGLENNEYSKDILNLLYETINEEKVLNYYLEDEQNLDKVL DIFIRTNDGGTKLTFSDLLMSFLTVHWSDARENFEELIREVNQFGDFSITIDFILKNMLV LYADDIKSRVKNFNEDVINKIKTNWERIRKSILNAFEMFYRLGFENRTFPAKNAAIPIVY YIYENKLEDEVIKNRFLDSNTQNANSQLMKKWLLLVFLKRIFGGQSDSILREIRKIIDDS SSGVFPLKEIINSAKSNPTKNYSFDDAIIEGLFEVQCGSDDAFFVLSLFYPDLDYFNQNF DIDHIHPKSKFQNKTFMENHFSKEEIERIGNNWNKIGNLQLLNKEKNILKKDKSLSEWME INHLNNSFLFIDEDIKLDIENFELFYENRVAKMKQDLKELVK >gi|307679013|gb|GL456784.1| GENE 50 53141 - 53437 310 98 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229546533|ref|ZP_04435258.1| ## NR: gi|229546533|ref|ZP_04435258.1| hypothetical protein HMPREF0349_1751 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T8] hypothetical protein HMPREF9521_02926 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9509_03203 [Enterococcus faecalis TX0411] hypothetical protein HMPREF0349_1751 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T8] hypothetical protein HMPREF9509_03203 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9521_02926 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9496_02017 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9508_02509 [Enterococcus faecalis TX0312] # 1 98 1 98 98 168 100.0 1e-40 MNTHKMQFGWIIEAPKYLSILTNQDGLVAIVSEYTTFGDNQSLLITLSETSAKVAVTPHY ISSLTISTDKKIKISTSPFYEQQIVEIEKMNSDGQIID >gi|307679013|gb|GL456784.1| GENE 51 53625 - 54365 119 246 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256854436|ref|ZP_05559800.1| ## NR: gi|256854436|ref|ZP_05559800.1| predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis T8] hypothetical protein EF62_1077 [Enterococcus faecalis 62] # 1 246 1 246 246 472 100.0 1e-131 MSKLYSNHSHLSKVLKHSALPILITKEFDFFRCVEFNQNFYEKTASELFHGNLRDSNSSN RYSQLFPNQKLSYWSDTPDTSRKEILKHGSSKNIVTFWAYDDLTSTFPTLENEEPLIIID GIQFGFEDILEKCDNNIPLSSEDNILITKINHAKPDCIAYKSMVTGTTNFLFFEKVFKKL AIKEVRLKMGELKSNDSNRIICAATSDYLPILESYGECFTPIAQTKMNENYLKSAEYKSR SKIYNH >gi|307679013|gb|GL456784.1| GENE 52 54474 - 55322 439 282 aa, chain - ## HITS:1 COG:L34517 KEGG:ns NR:ns ## COG: L34517 COG0582 # Protein_GI_number: 15672627 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Lactococcus lactis # 1 282 2 312 312 94 25.0 3e-19 MNWEDIILEFCMDITVRGFSKITIKNYKSKLRNTANFFKSINVEPSQIEKKQIKSWIIDM QEKEMQASTINVSVSRLKKLFDYMLIEKYIDYNPFVDIERLKEQRKVIYPLNDYEIKQML TVAKKHPYKHIAQRNVVILMLMIECGLRISEVCEIRDEDIMNNQIIIRKSKNNKDRAVAV SPILKKEIIKYQRIKKRKFGLLEGNPFIVSNLGKKLNEKSIWQIMQEIKKQIDIRDCVRF SGHTLRHTYASMQLRNGLDIYTLSSEDFIEKSIKTSTLMNLR >gi|307679013|gb|GL456784.1| GENE 53 55457 - 57031 1975 524 aa, chain - ## HITS:1 COG:SP0439 KEGG:ns NR:ns ## COG: SP0439 COG4108 # Protein_GI_number: 15900357 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptide chain release factor RF-3 # Organism: Streptococcus pneumoniae TIGR4 # 3 524 1 514 514 798 76.0 0 MTINQKEAVDSRRTFAIISHPDAGKTTITEQLLLFGGAIRQAGTVKGKKTGNFAKSDWME IEKQRGISVTSSVMQFDYQDKRINILDTPGHEDFSEDTYRTLMAVDSAVMVIDSAKGIEA QTKKLFQVVKKRGIPIFTFINKLDRDGREPLELLEELEELLDIESYPMNWPIGMGKGLEG LYDIYNERVELYRPENNGGERFIPLKDGDIPSDLPLHNNSVYQQVLEDVELLVEAGDEFS EEKIARGDQTPVFFGSALTNFGVQTFLETFLQFAPAPHAHKTEEGGEVSPYEKEFSGFVF KIQANMNPAHRDRIAFVRICSGVFERGMDVTLGRTGKKVKLSNVTQFMADARENVTEAVA GDIIGVYDTGNYQIGDTLYEGKMNVQYEELPSFTPELFMKVTAKNVMKQKSFHKGIYQLV QEGAIQLYKTYLTEEYIIGAVGQLQFEVFQYRMSNEYNAEVVMTPMGSKIARWINPEDLD ERMSSSRNILARDRFDQPLFLFENQFAERWFADKYPDVELKSLM >gi|307679013|gb|GL456784.1| GENE 54 57205 - 58584 1713 459 aa, chain - ## HITS:1 COG:L64811 KEGG:ns NR:ns ## COG: L64811 COG1253 # Protein_GI_number: 15673796 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Lactococcus lactis # 1 443 1 442 449 465 57.0 1e-131 MNNADPESQSLIAQLLLLVVLTFINAFLAAAEIAVVSVNKNRVEQKAEDGDAKAQKLLKV LQDPNNFLSTIQVGITLVNILSGASLAETLSSRLAPVLGGGAAAKSLASIIILALLTYVS IVFGELYPKRIAMNKSEEVAQLTSGAVRFLGVIARPFVWLLSASTDLLSKITPMTFDDAD SKMTRDEMRYMLETEGVLENEELEMLQGVFSLDTKVAREVMVPRTDAFMVDIQDDVQENI NLILGENYSRIPVYSEDKDKIVGILHTKTLLKAARNLGFENIELGAIIQEPLFVPETIFI DDLLYELKRTQNQMAILLDEYGGVVGLATLEDLLEEIVGEIDDETDEVENLYTQVADNEY LVQGRMLIDEFNEVFETDLHMSDVDTMAGYLITALGTIPDEGEKPSFEVGNIKLTAEEME GTRLLVLRVHFYDEETVDEEPEENRRFFRKEMEDDEPRR >gi|307679013|gb|GL456784.1| GENE 55 58759 - 59904 1378 381 aa, chain - ## HITS:1 COG:lin0908 KEGG:ns NR:ns ## COG: lin0908 COG0628 # Protein_GI_number: 16799980 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Listeria innocua # 3 362 4 363 378 306 47.0 4e-83 MINRFKESKLFFWSVELLVVAMLLFIASKINFLFAPIGTFFSTLFAPVLVAGFLYYLLNP VVNLLMKTKMKRIYAVLLVFLLLIIALVLILLTIIPKLADQLASLASSMPDFFKQVETWI YEIAELPIFKQIDLTSYIEKMDISYANIIQQFLSSLSSSLGSIVSTVASTTIVLVTAPFI LFYMLKDGDKLVPAIQRFLPEKRKDDIVDLLGQLNQTLSSYISGQAIECLFVGTFTIIGY SLLGVRYAFLFGVIAGFTNLIPYLGPYLGLAPAVLVTIFNEPVKAALCCLVVLVVQQLDG NIIYPNVIGKSLKIHPLTIILILLVAGNLAGLLGIFLGVPFYAICRTIIYYVIDMVKAGR SEKVTNAVLLGNETNTKENNG >gi|307679013|gb|GL456784.1| GENE 56 60049 - 60480 563 143 aa, chain + ## HITS:1 COG:SA0906 KEGG:ns NR:ns ## COG: SA0906 COG0454 # Protein_GI_number: 15926640 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Staphylococcus aureus N315 # 16 143 13 140 144 123 46.0 1e-28 MHVAQTKDTMSDLYLDAVRLRQRVFVAEQGVPEEMEIDEYEAHCIHFVLYTDHVAVATCR LLPLENGVMKLQRMAVEKAYRGADYGRMIMEAAENFAKEQGYHKITLGAQVTAVGFYERL GYQKTGAPFMDAGIEHYEMNKEL >gi|307679013|gb|GL456784.1| GENE 57 60568 - 61101 434 177 aa, chain - ## HITS:1 COG:L196206 KEGG:ns NR:ns ## COG: L196206 COG3557 # Protein_GI_number: 15672951 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Uncharacterized domain/protein associated with RNAses G and E # Organism: Lactococcus lactis # 1 176 1 176 176 289 82.0 2e-78 MGIPKEGEFVTIQSYKHDGHLHRTWRDTMVLKTSEYSLIGVNDHTLVTESDGRRWVTREP AIVYFHKKYWFNIIAMIREKGVSYYCNLASPYVLDDEALKYIDYDLDIKVFPDGEKRLLD VDEYEFHSKLMDYPEDIDFILKENVKTLVDWINNEKGPFSPEYVDIWYQRYQQLSKK >gi|307679013|gb|GL456784.1| GENE 58 61290 - 62267 1077 325 aa, chain - ## HITS:1 COG:SA1994 KEGG:ns NR:ns ## COG: SA1994 COG3684 # Protein_GI_number: 15927772 # Func_class: G Carbohydrate transport and metabolism # Function: Tagatose-1,6-bisphosphate aldolase # Organism: Staphylococcus aureus N315 # 5 319 4 321 326 373 61.0 1e-103 MKKISEQKRKHLENLVDDQGIIGALAIDQRGALKRMMGKYKEVTAQEISDFKVLVSRCLT PETSAILLDPEYGLAAAENRAQTSGLLLAYEKTGYDASTPGRLPDSLDVWSVKRLKEAGA DACKFLLYYDVDESEAINERKKAYIERIGSECLAEEIPFFLEIVSYDANNSDSASKEYAK VKPHKVIEAMKEFSKDRYNVDVLKVEVPVNMNFVEGFGTESLYSQDEAQAFFNMQSEATQ LPFIFLSAGVSATMFQETLKFAKKAGSSFNGVLCGRATWADGVLPFVQQGSEAAVAWLET TGKTNVDELNQVLRESAVSVFEKIQ >gi|307679013|gb|GL456784.1| GENE 59 62264 - 62725 622 153 aa, chain - ## HITS:1 COG:hrsA_1 KEGG:ns NR:ns ## COG: hrsA_1 COG1762 # Protein_GI_number: 16128706 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Escherichia coli K12 # 11 149 34 173 183 84 29.0 1e-16 MAFIKENHIFLNQQLQTQEDVFHFLAKKSTELEVAQDAQEVFDKLNEREQEGTTGMMNGF AIPHAKAATIQQAAIIIVTLDQGVEWQSLDNQLTEFVIALFIPDAEAGTTHLKLLSSVAR LLLREEVTSGLKQASSPAEIATLLNNQLGEGTE >gi|307679013|gb|GL456784.1| GENE 60 62752 - 64170 1807 472 aa, chain - ## HITS:1 COG:STM3255_2 KEGG:ns NR:ns ## COG: STM3255_2 COG1299 # Protein_GI_number: 16766553 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Salmonella typhimurium LT2 # 132 456 1 324 350 396 64.0 1e-110 MATYQLIAATGCPTGIAHTYMAQEALEQAAKRKGITIKVETHGQIGIENELTPAEIQGAE AVIIAADKDVQAERFAGKRIIDVPVSVGIKEADRLIEEALAGKGSIAAENQAVDELEQET QISSGNVGHSIYKNLMNGVSHMLPFVVAGGILIALSFAIWGIYSFDPESSQYNATAAMLK SIGDASMGMMVPILSAYIAEGIAKRPGLVVGFVGGLIANTGGTGFLGGILSGFLAGYFIL LLQRVFKGLPKSLDGLKAIFLYPVIGVAVIGITMSLLADPMKAVNEGMMSFLASFQNSSP LVLGIIVGCMCAFDMGGPVNKAAYVTGTALLAQGNTSFMAGVSAACIAPPLITGFATLFF GKYFDTNERNAGLVNFILGSTHITEGAIPFAAKDPLKVLPIMMLGSSIAAVLTYMFGVQV PAPHGGFLVLPVVTHAVQWVLAILAGSLVGGLLLGFVQKSRIAKQEQSLSKK >gi|307679013|gb|GL456784.1| GENE 61 64175 - 65101 1133 308 aa, chain - ## HITS:1 COG:BH0827 KEGG:ns NR:ns ## COG: BH0827 COG1105 # Protein_GI_number: 15613390 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Bacillus halodurans # 3 303 2 299 306 216 40.0 5e-56 MTIYTCTLNLAIDLFIETEELVPFVVNRTKEDDIQANGKGVNVSLILKMLGIDNTALGVK AGFTGNYVEDYLKEKEITTDFIEVAGTTRINVFTKVTQDQKEYKLVNKGPKLSEEHVQRF LKKISELRKGDYLCVSGSLPQGVSPSILIEISRICFEKQVFLILDSSYEEILDCLPYQPF LLKPNEEELQEWFHTEVQTKDDYIFYGQELLKRGAKNILLSLGSEGALFMNNEKVLSGNS PTGMVVNTACSGDAMLGTFLAGWHQGLSLEKNLKRSIAAGSSTAFRKGLTDFSDVQELEQ QIKIQEEE >gi|307679013|gb|GL456784.1| GENE 62 65279 - 66025 469 248 aa, chain + ## HITS:1 COG:L47971 KEGG:ns NR:ns ## COG: L47971 COG1737 # Protein_GI_number: 15673967 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 5 246 4 241 244 139 36.0 4e-33 MEQKLSESEQYLWHFIETHILEIPDYSIVKLSERANVSTATIVRTMKKKGYEGFTSFKHH LKDKENQNINFSALEKVDRGIRTAILKNEEEVTRTINMIEIGNIEDAIQKIKASRRIIIF ARGFSELIAQEMMVKFQLAGKYCELHTDPEIIKNISKKLSKKDVALFVSLNGETQELVVA GKNCYDSEIGTILLTASKHSSLMKYIEIPFVGFKSEGSFFPDYEVRSRLPLSILARILLD AYALRTTT >gi|307679013|gb|GL456784.1| GENE 63 66085 - 66729 974 214 aa, chain - ## HITS:1 COG:SPy1726 KEGG:ns NR:ns ## COG: SPy1726 COG0220 # Protein_GI_number: 15675576 # Func_class: R General function prediction only # Function: Predicted S-adenosylmethionine-dependent methyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 211 1 211 211 296 66.0 2e-80 MRVRNRPGAAEYMAKYPQYVVEGPEKWQGKWQERFGNNHPIHIEIGSGKGRFIYEMAKAH PEINYIGIDMQLSILSIALDKLVAEPLPNLQLLRVDGEALTEYFAENEVDLIYLNFSDPW PKKKHEKRRLTYKNFLATDEIILKPNGEIHFKTDNQGLFEYSLSSFSKYGMIIERVWLDL HNSEFEGNIMTEYEEKFSSRGQRIYRVEARFVAK >gi|307679013|gb|GL456784.1| GENE 64 66802 - 67581 823 259 aa, chain - ## HITS:1 COG:L155396 KEGG:ns NR:ns ## COG: L155396 COG0510 # Protein_GI_number: 15672730 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted choline kinase involved in LPS biosynthesis # Organism: Lactococcus lactis # 5 255 2 252 257 201 37.0 2e-51 MEFQLDKDWRLQPIKGATGQTYMGIKETEKVFIKRNTSPLLAALSKEGLAPKMIWTKRTA NGDVLTAQEWLEGRLLHADEIGKRNDVIDVLYQLHHSNLLKDMLKKIGGEVCTPLTMLKE YKRQLPKELKRNSYLKEVITYLYNHLPEYPETSYVAVHGDVNHRNWLVSNNYLYLVDWDS VMVADPAVDLGMILSHYVPRSGWNQWLLSYGLIPNESTVQRIYWYGLFSFLQEIVRHHQE GERRAMTAEILQLKRMFSS >gi|307679013|gb|GL456784.1| GENE 65 67868 - 68920 855 350 aa, chain - ## HITS:1 COG:lin2317 KEGG:ns NR:ns ## COG: lin2317 COG4473 # Protein_GI_number: 16801381 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted ABC-type exoprotein transport system, permease component # Organism: Listeria innocua # 4 339 10 342 407 174 34.0 2e-43 MGEFFSQRLSRHFKKMSKYLRYILNDHFVLVCMFLLGGLGLYYSQLLKELPRDFVWGRPL ILLGWLLLIQVGKLATLTEEPDKVFLLPKEKQFAAYLKRALRYSLLLPIVVSFLGSGLLM PLIVVTTGWSFQTFFLFLVMLVCMIYTHLSLQSYGLYHLSSTTYRSWWFVWLISSLLIMT GAIYWTPWVGVIGGIILAVCLSSIWQNKMKKSFLDWEKMIQKEQNRMHRIYKFIQLFTDI PEVSSTVKRRKYLDPLLGVVKKTSENTYAYLFIRSFLRGSEYSGLLFRLILVGGVLLFFL QEFWIALVVALLFVYLIGFQLIPMYTQFDYMVMTQLYPISIEKNKQRFAG >gi|307679013|gb|GL456784.1| GENE 66 68922 - 69659 262 245 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 2 232 8 239 309 105 30 7e-22 MSLTIEHLTGGYGHIPVLKDINFDVKSGEMVGLIGLNGAGKSTTIKNIIGLLTPQKGKIM IDGETLQQAPEEYRKKIGYIPETPSLYEELTLKEHIEVTALAYDIPLEEAFKRAEPLLKT FRLDNKLEWFPANFSKGMKQKVMVLCAFLIEPSLYIIDEPFLGLDPLAIHALLELMDTMR KQGAAILMSTHILATAEKYCDRFVVLHEGKLRANGTMAELRAEFNLPESSLDDIYLALTK EEKVG >gi|307679013|gb|GL456784.1| GENE 67 69643 - 69798 56 51 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315031405|gb|EFT43337.1| ## NR: gi|315031405|gb|EFT43337.1| ABC transporter, ATP-binding protein [Enterococcus faecalis TX0017] # 1 41 5 45 296 83 97.0 6e-15 MSSLKSSFHFVYNKRKKKIHLIKGVIFEFLVRLGFNNGREKVGGKRNELNN >gi|307679013|gb|GL456784.1| GENE 68 69873 - 70298 510 141 aa, chain + ## HITS:1 COG:lin2319 KEGG:ns NR:ns ## COG: lin2319 COG0537 # Protein_GI_number: 16801383 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Listeria innocua # 1 141 1 140 140 181 60.0 3e-46 MNDCIFCKIINGEIPSYKVYEDEKVYAFLDITQVTKGHTLMIPKQHVADIFEYNDVLASD VFARIPKVARALEKAFPEMEGLNILNNNKEVAYQSVFHSHVHLIPRYSKEDDFSIHFGNH QEDYSAEAMQEIAETIAKQVN >gi|307679013|gb|GL456784.1| GENE 69 70299 - 70643 311 114 aa, chain + ## HITS:1 COG:no KEGG:EF0686 NR:ns ## KEGG: EF0686 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 114 1 114 114 200 100.0 2e-50 MKKFIKGLFFGAAAGTIGGLLAAPRSGKETRQHLINELEDYRSLKNQVTNDWDQVQRNLA VVEENVPLATEFSKDLQQEITDFKFQAEPRIAQIKEQIAKITAELPDTQTNKQK Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:11:49 2011 Seq name: gi|307679012|gb|GL456785.1| Enterococcus faecalis TX0312 genomic scaffold Scfld86, whole genome shotgun sequence Length of sequence - 209836 bp Number of predicted genes - 202, with homology - 200 Number of transcription units - 99, operones - 53 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 114 - 173 9.4 1 1 Op 1 5/0.038 + CDS 214 - 567 429 ## COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) 2 1 Op 2 . + CDS 597 - 1712 1523 ## COG0787 Alanine racemase 3 1 Op 3 . + CDS 1728 - 2105 427 ## COG2337 Growth inhibitor + Term 2192 - 2251 12.4 + Prom 2227 - 2286 10.4 4 2 Op 1 . + CDS 2424 - 3119 794 ## EF0851 hypothetical protein 5 2 Op 2 . + CDS 3144 - 4439 1451 ## EF0852 hypothetical protein 6 2 Op 3 . + CDS 4444 - 4746 195 ## EF0853 hypothetical protein + Prom 4748 - 4807 2.7 7 3 Tu 1 . + CDS 4979 - 5554 466 ## COG0681 Signal peptidase I + Term 5558 - 5605 -1.0 8 4 Tu 1 . - CDS 5609 - 7087 1361 ## EF0855 hypothetical protein - Prom 7190 - 7249 10.8 + Prom 7129 - 7188 10.9 9 5 Op 1 . + CDS 7261 - 8013 783 ## COG2365 Protein tyrosine/serine phosphatase 10 5 Op 2 . + CDS 8092 - 8322 422 ## EF0857 hypothetical protein 11 5 Op 3 . + CDS 8356 - 11148 3080 ## COG1511 Predicted membrane protein + Term 11153 - 11203 10.6 + Prom 11278 - 11337 11.5 12 6 Tu 1 . + CDS 11369 - 12538 1184 ## COG0053 Predicted Co/Zn/Cd cation transporters + Term 12565 - 12616 7.1 + Prom 12666 - 12725 7.2 13 7 Tu 1 . + CDS 12836 - 14659 1780 ## COG0531 Amino acid transporters + Term 14667 - 14702 5.1 - Term 14654 - 14689 5.1 14 8 Tu 1 . - CDS 14695 - 15159 256 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Term 15168 - 15219 6.6 15 9 Op 1 13/0.038 - CDS 15231 - 15893 885 ## COG1174 ABC-type proline/glycine betaine transport systems, permease component 16 9 Op 2 13/0.038 - CDS 15897 - 16817 1228 ## COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) 17 9 Op 3 24/0.000 - CDS 16820 - 17455 927 ## COG1174 ABC-type proline/glycine betaine transport systems, permease component 18 9 Op 4 . - CDS 17459 - 18643 1387 ## COG1125 ABC-type proline/glycine betaine transport systems, ATPase components - Prom 18777 - 18836 7.4 - Term 19204 - 19254 4.4 19 10 Tu 1 . - CDS 19279 - 20169 995 ## COG0346 Lactoylglutathione lyase and related lyases - Prom 20207 - 20266 8.6 + Prom 20150 - 20209 7.4 20 11 Tu 1 . + CDS 20335 - 21366 1225 ## COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) + Term 21500 - 21541 -0.4 - Term 21648 - 21694 10.5 21 12 Tu 1 . - CDS 21766 - 22014 246 ## COG1476 Predicted transcriptional regulators - Prom 22053 - 22112 7.9 + Prom 22597 - 22656 8.4 22 13 Tu 1 . + CDS 22894 - 25539 3169 ## COG0474 Cation transport ATPase + Term 25598 - 25643 17.1 + Prom 25628 - 25687 8.3 23 14 Tu 1 . + CDS 25873 - 27879 1902 ## COG3158 K+ transporter + Term 27937 - 27990 1.3 - Term 27888 - 27936 1.1 24 15 Tu 1 . - CDS 27949 - 28647 636 ## EF0873 Cro/CI family transcriptional regulator - Prom 28722 - 28781 6.7 25 16 Tu 1 . + CDS 28959 - 30917 2267 ## COG2217 Cation transport ATPase + Term 30931 - 30979 10.2 + Prom 30959 - 31018 4.6 26 17 Op 1 . + CDS 31041 - 32465 676 ## EF0876 hypothetical protein 27 17 Op 2 . + CDS 32534 - 33445 1142 ## COG4989 Predicted oxidoreductase + Term 33495 - 33548 11.6 + Prom 33542 - 33601 7.5 28 18 Op 1 4/0.038 + CDS 33633 - 36281 3387 ## COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains + Term 36324 - 36369 4.1 29 18 Op 2 4/0.038 + CDS 36381 - 37223 978 ## COG0266 Formamidopyrimidine-DNA glycosylase 30 18 Op 3 1/0.077 + CDS 37220 - 37819 659 ## COG0237 Dephospho-CoA kinase + Prom 37905 - 37964 5.7 31 19 Op 1 6/0.038 + CDS 37999 - 38481 536 ## COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains 32 19 Op 2 8/0.038 + CDS 38497 - 39906 1705 ## COG3611 Replication initiation/membrane attachment protein 33 19 Op 3 . + CDS 39906 - 40835 1079 ## COG1484 DNA replication protein + Term 40837 - 40875 -0.9 + Prom 40873 - 40932 4.8 34 20 Op 1 . + CDS 41061 - 42125 1030 ## EF0884 hypothetical protein 35 20 Op 2 . + CDS 42139 - 42498 253 ## EF0885 hypothetical protein 36 20 Op 3 . + CDS 42594 - 43658 876 ## EF0885 hypothetical protein 37 20 Op 4 2/0.038 + CDS 43648 - 45231 1458 ## COG5298 Uncharacterized protein conserved in bacteria 38 20 Op 5 . + CDS 45228 - 46490 1185 ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis 39 20 Op 6 . + CDS 46505 - 48571 1922 ## EF0888 hypothetical protein 40 20 Op 7 . + CDS 48573 - 49421 960 ## COG2199 FOG: GGDEF domain 41 20 Op 8 . + CDS 49437 - 49748 394 ## EF0890 hypothetical protein + Term 49752 - 49802 15.6 - Term 49738 - 49790 15.0 42 21 Op 1 1/0.077 - CDS 49796 - 50950 1457 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 43 21 Op 2 16/0.000 - CDS 50966 - 51688 634 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 44 21 Op 3 . - CDS 51681 - 53144 1692 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - Prom 53226 - 53285 8.9 + Prom 53117 - 53176 7.9 45 22 Op 1 . + CDS 53199 - 53318 58 ## gi|315149655|gb|EFT93671.1| alcohol dehydrogenase 46 22 Op 2 . + CDS 53333 - 54421 1257 ## COG0371 Glycerol dehydrogenase and related enzymes + Term 54430 - 54480 2.3 + Prom 54489 - 54548 6.3 47 23 Op 1 15/0.000 + CDS 54580 - 55725 1244 ## COG0343 Queuine/archaeosine tRNA-ribosyltransferase + Prom 55728 - 55787 3.7 48 23 Op 2 . + CDS 55807 - 56184 584 ## COG1862 Preprotein translocase subunit YajC + Term 56324 - 56378 2.1 + Prom 56354 - 56413 7.1 49 24 Op 1 . + CDS 56464 - 56751 294 ## EF0899 hypothetical protein + Prom 56800 - 56859 7.7 50 24 Op 2 . + CDS 56909 - 59506 3078 ## COG1454 Alcohol dehydrogenase, class IV + Term 59518 - 59566 14.7 - Term 59510 - 59549 9.3 51 25 Op 1 3/0.038 - CDS 59551 - 60594 1065 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases 52 25 Op 2 5/0.038 - CDS 60578 - 61684 1101 ## COG1577 Mevalonate kinase 53 25 Op 3 5/0.038 - CDS 61687 - 62682 1279 ## COG3407 Mevalonate pyrophosphate decarboxylase 54 25 Op 4 . - CDS 62682 - 63626 876 ## COG1577 Mevalonate kinase - Prom 63769 - 63828 5.7 - Term 63725 - 63759 -0.3 55 26 Op 1 . - CDS 63896 - 64531 376 ## COG1357 Uncharacterized low-complexity proteins 56 26 Op 2 . - CDS 64528 - 65601 1129 ## COG1289 Predicted membrane protein - Prom 65707 - 65766 7.5 + Prom 65745 - 65804 9.4 57 27 Tu 1 . + CDS 65845 - 67515 2057 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Term 67546 - 67590 1.3 - Term 67532 - 67580 3.0 58 28 Tu 1 . - CDS 67594 - 67944 315 ## EF0908 hypothetical protein - Prom 67977 - 68036 6.1 + Prom 67871 - 67930 4.0 59 29 Op 1 49/0.000 + CDS 68035 - 68976 244 ## PROTEIN SUPPORTED gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 60 29 Op 2 44/0.000 + CDS 68976 - 70028 1145 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 61 29 Op 3 . + CDS 70044 - 71000 1256 ## COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 62 29 Op 4 . + CDS 71041 - 72111 839 ## COG0675 Transposase and inactivated derivatives + Term 72333 - 72366 0.8 + Prom 72260 - 72319 11.4 63 30 Op 1 36/0.000 + CDS 72532 - 73032 426 ## PROTEIN SUPPORTED gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 + Term 73083 - 73116 -0.9 + Prom 73053 - 73112 1.6 64 30 Op 2 46/0.000 + CDS 73146 - 73346 340 ## PROTEIN SUPPORTED gi|29375499|ref|NP_814653.1| 50S ribosomal protein L35 65 30 Op 3 . + CDS 73407 - 73766 595 ## PROTEIN SUPPORTED gi|29375500|ref|NP_814654.1| 50S ribosomal protein L20 + Term 73784 - 73819 7.1 - Term 73731 - 73784 3.2 66 31 Tu 1 . - CDS 73813 - 74163 609 ## PROTEIN SUPPORTED gi|238856926|ref|ZP_04647185.1| 30S ribosomal protein S8 - Prom 74197 - 74256 2.8 + Prom 74175 - 74234 4.0 67 32 Tu 1 . + CDS 74261 - 74620 544 ## COG3759 Predicted membrane protein + Term 74638 - 74695 4.8 + Prom 74665 - 74724 9.2 68 33 Op 1 . + CDS 74832 - 75179 399 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 69 33 Op 2 . + CDS 75197 - 75712 193 ## PROTEIN SUPPORTED gi|148360238|ref|YP_001251445.1| nucleotidyltransferase PLUS glutamate rich protein GrpB PLUS ribosomal protein alanine acetyltransferase - Term 75476 - 75525 2.2 70 34 Tu 1 . - CDS 75728 - 76903 951 ## COG0659 Sulfate permease and related transporters (MFS superfamily) - Prom 76931 - 76990 7.8 - Term 76949 - 76996 13.1 71 35 Tu 1 . - CDS 76997 - 78025 1083 ## COG2855 Predicted membrane protein - Prom 78051 - 78110 6.8 + Prom 78050 - 78109 8.2 72 36 Op 1 2/0.038 + CDS 78132 - 78968 668 ## COG0583 Transcriptional regulator 73 36 Op 2 . + CDS 79033 - 79905 899 ## COG3865 Uncharacterized protein conserved in bacteria + Prom 80071 - 80130 9.3 74 37 Op 1 . + CDS 80180 - 80404 290 ## EF0925 hypothetical protein + Prom 80406 - 80465 3.0 75 37 Op 2 40/0.000 + CDS 80493 - 81167 776 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 76 37 Op 3 . + CDS 81181 - 82206 964 ## COG0642 Signal transduction histidine kinase + Term 82213 - 82256 0.5 + Prom 82225 - 82284 7.7 77 38 Op 1 . + CDS 82354 - 83217 1078 ## COG4975 Putative glucose uptake permease 78 38 Op 2 2/0.038 + CDS 83258 - 84649 1606 ## COG0531 Amino acid transporters + Term 84658 - 84718 13.2 + Prom 84729 - 84788 5.2 79 39 Op 1 . + CDS 84837 - 86846 2397 ## COG0143 Methionyl-tRNA synthetase + Term 86855 - 86912 16.0 + Prom 86860 - 86919 5.1 80 39 Op 2 . + CDS 86946 - 87167 104 ## gi|229548867|ref|ZP_04437592.1| hypothetical protein HMPREF0345_1079 + Term 87178 - 87233 13.3 - Term 87162 - 87223 12.4 81 40 Op 1 . - CDS 87226 - 87831 477 ## EF0932 hypothetical protein - Prom 87875 - 87934 3.6 82 40 Op 2 . - CDS 87952 - 90150 2418 ## COG3973 Superfamily I DNA and RNA helicases - Prom 90176 - 90235 5.0 + Prom 90151 - 90210 4.3 83 41 Op 1 3/0.038 + CDS 90309 - 91079 993 ## COG0084 Mg-dependent DNase 84 41 Op 2 7/0.038 + CDS 91088 - 91660 850 ## COG1658 Small primase-like proteins (Toprim domain) 85 41 Op 3 . + CDS 91679 - 92566 986 ## COG0030 Dimethyladenosine transferase (rRNA methylation) + Term 92571 - 92620 13.1 + Prom 92595 - 92654 5.0 86 42 Tu 1 . + CDS 92694 - 93311 734 ## EF0937 hypothetical protein + Term 93322 - 93366 15.5 - Term 93310 - 93354 15.5 87 43 Tu 1 . - CDS 93361 - 94464 1603 ## COG3839 ABC-type sugar transport systems, ATPase components - Prom 94496 - 94555 6.3 + Prom 94378 - 94437 7.6 88 44 Op 1 . + CDS 94650 - 95072 575 ## COG1803 Methylglyoxal synthase + Prom 95086 - 95145 6.8 89 44 Op 2 . + CDS 95346 - 95885 609 ## EF0940 hypothetical protein + Term 95900 - 95944 7.6 - Term 95888 - 95932 7.6 90 45 Op 1 35/0.000 - CDS 95937 - 97703 212 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 91 45 Op 2 . - CDS 97693 - 99420 182 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 - Prom 99560 - 99619 9.2 + Prom 99456 - 99515 3.5 92 46 Tu 1 . + CDS 99546 - 100313 586 ## COG4905 Predicted membrane protein + Prom 100444 - 100503 10.5 93 47 Op 1 . + CDS 100574 - 101782 1435 ## COG3584 Uncharacterized protein conserved in bacteria + Prom 101784 - 101843 3.5 94 47 Op 2 . + CDS 101879 - 102442 923 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 102446 - 102492 12.3 - Term 102426 - 102487 19.3 95 48 Op 1 . - CDS 102488 - 103012 378 ## COG4894 Uncharacterized conserved protein 96 48 Op 2 . - CDS 103064 - 103933 1013 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 104121 - 104180 5.4 + Prom 103988 - 104047 3.8 97 49 Tu 1 . + CDS 104067 - 104747 791 ## COG0692 Uracil DNA glycosylase + Prom 104817 - 104876 5.1 98 50 Tu 1 . + CDS 104903 - 105886 1307 ## COG0280 Phosphotransacetylase + Term 105922 - 105970 5.5 + Prom 105954 - 106013 8.5 99 51 Op 1 3/0.038 + CDS 106043 - 106522 662 ## COG0802 Predicted ATPase or kinase 100 51 Op 2 . + CDS 106515 - 107036 216 ## PROTEIN SUPPORTED gi|229236145|ref|ZP_04360568.1| acetyltransferase, ribosomal protein N-acetylase + Term 107070 - 107128 11.3 + Prom 107099 - 107158 12.4 101 52 Tu 1 . + CDS 107206 - 107415 265 ## EF0953 hypothetical protein + Term 107448 - 107500 16.7 - Term 107440 - 107484 12.4 102 53 Op 1 1/0.077 - CDS 107489 - 108499 1068 ## COG1609 Transcriptional regulators 103 53 Op 2 . - CDS 108523 - 109530 325 ## PROTEIN SUPPORTED gi|15900011|ref|NP_344615.1| aldose 1-epimerase 104 53 Op 3 11/0.038 - CDS 109520 - 110188 689 ## COG0637 Predicted phosphatase/phosphohexomutase 105 53 Op 4 . - CDS 110181 - 112475 2208 ## COG1554 Trehalose and maltose hydrolases (possible phosphorylases) - Prom 112503 - 112562 7.8 + Prom 112579 - 112638 5.4 106 54 Tu 1 . + CDS 112756 - 114924 2782 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Term 114976 - 115029 7.5 + Prom 114960 - 115019 3.2 107 55 Tu 1 . + CDS 115139 - 115963 858 ## COG3568 Metal-dependent hydrolase + Term 115964 - 116005 10.6 - Term 115949 - 115996 14.5 108 56 Tu 1 . - CDS 116023 - 116838 1071 ## COG0345 Pyrroline-5-carboxylate reductase - Prom 116886 - 116945 5.9 + Prom 116706 - 116765 6.5 109 57 Op 1 . + CDS 116965 - 117927 691 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain 110 57 Op 2 . + CDS 117908 - 118207 364 ## EF0963 hypothetical protein 111 57 Op 3 . + CDS 118224 - 118517 360 ## COG1694 Predicted pyrophosphatase + Prom 118576 - 118635 4.2 112 58 Tu 1 . + CDS 118662 - 119093 672 ## EF0966 MerR family transcriptional regulator + Term 119139 - 119192 7.5 113 59 Op 1 . + CDS 119546 - 119950 374 ## SGO_0507 protein of unknown function/lipoprotein, putative 114 59 Op 2 . + CDS 119943 - 120155 300 ## SAK_0322 hypothetical protein + Prom 120196 - 120255 7.1 115 60 Op 1 . + CDS 120310 - 120606 320 ## gi|323480146|gb|ADX79585.1| hypothetical protein EF62_1339 116 60 Op 2 . + CDS 120625 - 120903 374 ## gi|312901489|ref|ZP_07760763.1| conserved domain protein 117 60 Op 3 . + CDS 120982 - 121395 260 ## SGO_0507 protein of unknown function/lipoprotein, putative 118 60 Op 4 . + CDS 121397 - 122959 1500 ## SAK_0322 hypothetical protein 119 60 Op 5 . + CDS 122979 - 123263 325 ## gi|315149489|gb|EFT93505.1| hypothetical protein HMPREF9499_02285 120 60 Op 6 . + CDS 123271 - 123576 286 ## gi|229548909|ref|ZP_04437634.1| conserved hypothetical protein + Term 123583 - 123620 3.3 - TRNA 123626 - 123699 76.2 # Arg TCT 0 0 + Prom 123796 - 123855 6.3 121 61 Op 1 14/0.000 + CDS 123967 - 124275 518 ## PROTEIN SUPPORTED gi|29375551|ref|NP_814705.1| 50S ribosomal protein L21 122 61 Op 2 14/0.000 + CDS 124308 - 124652 564 ## PROTEIN SUPPORTED gi|29375552|ref|NP_814706.1| hypothetical protein EF0969 123 61 Op 3 . + CDS 124665 - 124952 485 ## PROTEIN SUPPORTED gi|29375553|ref|NP_814707.1| 50S ribosomal protein L27 + Term 124955 - 125004 8.3 + Prom 125099 - 125158 8.6 124 62 Tu 1 . + CDS 125189 - 125602 487 ## COG3223 Predicted membrane protein + Term 125618 - 125671 7.2 - Term 125605 - 125658 4.2 125 63 Tu 1 . - CDS 125673 - 126488 658 ## COG1408 Predicted phosphohydrolases - Prom 126508 - 126567 6.3 + Prom 126391 - 126450 7.2 126 64 Op 1 1/0.077 + CDS 126660 - 127724 1625 ## COG0006 Xaa-Pro aminopeptidase 127 64 Op 2 . + CDS 127738 - 128058 486 ## COG1694 Predicted pyrophosphatase + Term 128070 - 128114 5.1 + Prom 128228 - 128287 4.2 128 65 Op 1 10/0.038 + CDS 128391 - 128822 781 ## COG1302 Uncharacterized protein conserved in bacteria 129 65 Op 2 4/0.038 + CDS 128815 - 129267 637 ## COG0781 Transcription termination factor + Prom 129274 - 129333 6.0 130 66 Op 1 7/0.038 + CDS 129371 - 130216 1113 ## COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase 131 66 Op 2 . + CDS 130226 - 131572 1573 ## COG1570 Exonuclease VII, large subunit 132 66 Op 3 . + CDS 131574 - 131804 460 ## EF0980 exodeoxyribonuclease VII, small subunit 133 66 Op 4 3/0.038 + CDS 131804 - 132685 1211 ## COG0142 Geranylgeranyl pyrophosphate synthase 134 66 Op 5 6/0.038 + CDS 132699 - 133514 893 ## COG1189 Predicted rRNA methylase + Prom 133545 - 133604 10.9 135 67 Op 1 8/0.038 + CDS 133653 - 134102 475 ## COG1438 Arginine repressor 136 67 Op 2 . + CDS 134120 - 135793 2071 ## COG0497 ATPase involved in DNA repair + Term 135811 - 135868 13.6 - Term 135808 - 135847 5.0 137 68 Op 1 . - CDS 135884 - 135994 121 ## 138 68 Op 2 . - CDS 136062 - 137018 796 ## COG0598 Mg2+ and Co2+ transporters - Prom 137050 - 137109 7.5 139 69 Tu 1 . + CDS 137293 - 137664 199 ## EF0987 putative lipoprotein + Term 137719 - 137745 1.0 + Prom 137740 - 137799 5.8 140 70 Op 1 29/0.000 + CDS 137953 - 138384 533 ## COG2001 Uncharacterized protein conserved in bacteria 141 70 Op 2 . + CDS 138399 - 139355 1063 ## COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis 142 70 Op 3 . + CDS 139372 - 139779 562 ## EF0990 cell division protein 143 70 Op 4 4/0.038 + CDS 139779 - 142007 2525 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 144 70 Op 5 28/0.000 + CDS 142035 - 143000 1021 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 145 70 Op 6 4/0.038 + CDS 143023 - 144393 1584 ## COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase 146 70 Op 7 3/0.038 + CDS 144398 - 145489 1161 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase 147 70 Op 8 25/0.000 + CDS 145498 - 146622 1004 ## COG1589 Cell division septal protein + Term 146738 - 146775 0.1 + Prom 146651 - 146710 5.7 148 70 Op 9 35/0.000 + CDS 146796 - 148118 1528 ## COG0849 Actin-like ATPase involved in cell division 149 70 Op 10 4/0.038 + CDS 148145 - 149377 1610 ## COG0206 Cell division GTPase 150 70 Op 11 14/0.000 + CDS 149394 - 150071 546 ## COG0325 Predicted enzyme with a TIM-barrel fold 151 70 Op 12 . + CDS 150085 - 150729 766 ## COG1799 Uncharacterized protein conserved in bacteria 152 70 Op 13 . + CDS 150806 - 151015 98 ## EF1000 hypothetical protein 153 70 Op 14 6/0.038 + CDS 151042 - 151824 1342 ## PROTEIN SUPPORTED gi|29375583|ref|NP_814737.1| S4 domain-containing protein + Prom 151832 - 151891 6.8 154 71 Tu 1 . + CDS 151976 - 152677 977 ## COG3599 Cell division initiation protein + Term 152870 - 152912 9.0 + Prom 152889 - 152948 4.8 155 72 Tu 1 . + CDS 152988 - 155768 3303 ## COG0060 Isoleucyl-tRNA synthetase + Term 155773 - 155827 13.2 - Term 155768 - 155806 9.5 156 73 Op 1 . - CDS 155820 - 157343 1745 ## COG0364 Glucose-6-phosphate 1-dehydrogenase 157 73 Op 2 . - CDS 157343 - 158011 870 ## COG1321 Mn-dependent transcriptional regulator - Prom 158038 - 158097 5.2 - Term 158123 - 158182 13.3 158 74 Tu 1 . - CDS 158183 - 158551 437 ## EF1006 hypothetical protein - Prom 158593 - 158652 4.0 + Prom 158650 - 158709 8.1 159 75 Tu 1 . + CDS 158750 - 159481 705 ## COG1489 DNA-binding protein, stimulates sugar fermentation + Term 159520 - 159554 -0.7 + Prom 159496 - 159555 6.0 160 76 Op 1 1/0.077 + CDS 159587 - 160585 1508 ## COG0673 Predicted dehydrogenases and related proteins 161 76 Op 2 1/0.077 + CDS 160612 - 161913 1366 ## COG0513 Superfamily II DNA and RNA helicases 162 76 Op 3 1/0.077 + CDS 161958 - 164663 2753 ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain + Term 164676 - 164725 5.4 + Prom 164716 - 164775 5.5 163 77 Tu 1 10/0.038 + CDS 164892 - 165209 488 ## COG1440 Phosphotransferase system cellobiose-specific component IIB + Prom 165269 - 165328 7.1 164 78 Op 1 . + CDS 165351 - 166814 1595 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 165 78 Op 2 . + CDS 166858 - 167076 395 ## EF1014 hypothetical protein 166 78 Op 3 . + CDS 167096 - 167290 171 ## EF1015 hypothetical protein 167 78 Op 4 . + CDS 167290 - 167700 432 ## EF1016 hypothetical protein + Term 167703 - 167736 -0.2 + Prom 167782 - 167841 7.0 168 79 Op 1 8/0.038 + CDS 167976 - 168302 449 ## COG1440 Phosphotransferase system cellobiose-specific component IIB 169 79 Op 2 13/0.038 + CDS 168325 - 168645 465 ## COG1447 Phosphotransferase system cellobiose-specific component IIA 170 79 Op 3 8/0.038 + CDS 168711 - 169988 1614 ## COG1455 Phosphotransferase system cellobiose-specific component IIC + Term 169995 - 170050 10.5 + Prom 169993 - 170052 3.1 171 80 Op 1 . + CDS 170072 - 171466 1948 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 172 80 Op 2 . + CDS 171524 - 172717 1292 ## COG4552 Predicted acetyltransferase involved in intracellular survival and related acetyltransferases + Prom 172719 - 172778 6.2 173 80 Op 3 . + CDS 172800 - 172919 145 ## + Term 172946 - 173003 13.8 + TRNA 173038 - 173111 75.1 # Arg CCT 0 0 + Prom 173036 - 173095 76.3 174 81 Tu 1 . + CDS 173145 - 173477 568 ## PROTEIN SUPPORTED gi|29375603|ref|NP_814757.1| hypothetical protein EF1023 + Term 173508 - 173560 12.3 - Term 173494 - 173548 15.5 175 82 Tu 1 . - CDS 173591 - 176236 2747 ## COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase - Prom 176351 - 176410 6.4 + Prom 176307 - 176366 10.8 176 83 Op 1 4/0.038 + CDS 176406 - 177035 832 ## COG0517 FOG: CBS domain 177 83 Op 2 . + CDS 177048 - 177860 999 ## COG1806 Uncharacterized protein conserved in bacteria + Term 177864 - 177916 11.0 - Term 177845 - 177910 24.3 178 84 Op 1 . - CDS 177931 - 180462 2491 ## COG2898 Uncharacterized conserved protein 179 84 Op 2 . - CDS 180459 - 181193 537 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - Prom 181230 - 181289 8.0 + Prom 181167 - 181226 6.1 180 85 Op 1 . + CDS 181370 - 181954 533 ## EF1029 hypothetical protein 181 85 Op 2 . + CDS 181977 - 183032 1052 ## EF1030 endonuclease/exonuclease/phosphatase family protein + Term 183038 - 183084 10.3 - Term 183026 - 183072 10.3 182 86 Tu 1 . - CDS 183081 - 185318 1510 ## COG0178 Excinuclease ATPase subunit - Prom 185338 - 185397 7.3 + Prom 185289 - 185348 6.5 183 87 Tu 1 . + CDS 185480 - 187729 2449 ## COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases + Term 187738 - 187790 9.6 + Prom 187741 - 187800 6.6 184 88 Op 1 . + CDS 187824 - 188753 845 ## COG3173 Predicted aminoglycoside phosphotransferase 185 88 Op 2 . + CDS 188796 - 188909 95 ## EF1035 putative lipoprotein 186 88 Op 3 . + CDS 188855 - 189445 500 ## EF1035 putative lipoprotein + Prom 189459 - 189518 3.4 187 89 Tu 1 . + CDS 189564 - 189965 577 ## COG0105 Nucleoside diphosphate kinase + Term 189977 - 190023 11.6 + Prom 189980 - 190039 9.8 188 90 Op 1 . + CDS 190125 - 191735 1732 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase + Term 191741 - 191785 9.1 + Prom 191768 - 191827 3.4 189 90 Op 2 . + CDS 191878 - 192963 1091 ## EF1038 putative lipoprotein + Term 192974 - 193019 14.1 - Term 192956 - 193011 8.1 190 91 Tu 1 . - CDS 193078 - 193881 969 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 193969 - 194028 8.1 + Prom 193945 - 194004 3.1 191 92 Op 1 . + CDS 194033 - 194662 517 ## COG4330 Predicted membrane protein + Prom 194669 - 194728 10.2 192 92 Op 2 . + CDS 194814 - 196220 1755 ## COG2252 Permeases + Term 196309 - 196358 14.0 + Prom 196344 - 196403 8.7 193 93 Tu 1 . + CDS 196430 - 197626 962 ## COG0477 Permeases of the major facilitator superfamily + Term 197638 - 197693 3.1 - Term 197629 - 197680 10.5 194 94 Tu 1 . - CDS 197681 - 197866 237 ## EF1043 hypothetical protein + Prom 197726 - 197785 4.8 195 95 Tu 1 . + CDS 197984 - 201313 3244 ## COG0587 DNA polymerase III, alpha subunit + Prom 201344 - 201403 6.7 196 96 Op 1 12/0.038 + CDS 201486 - 202448 1279 ## COG0205 6-phosphofructokinase 197 96 Op 2 . + CDS 202513 - 204270 2346 ## COG0469 Pyruvate kinase + Term 204322 - 204367 8.3 + Prom 204564 - 204623 8.2 198 97 Op 1 20/0.000 + CDS 204644 - 205213 630 ## COG1399 Predicted metal-binding, possibly nucleic acid-binding protein 199 97 Op 2 . + CDS 205270 - 205449 322 ## PROTEIN SUPPORTED gi|29375627|ref|NP_814781.1| 50S ribosomal protein L32 + Term 205474 - 205524 12.2 + Prom 205539 - 205598 7.5 200 98 Tu 1 . + CDS 205654 - 207075 1748 ## COG0362 6-phosphogluconate dehydrogenase + Term 207086 - 207129 9.2 + Prom 207115 - 207174 3.3 201 99 Op 1 40/0.000 + CDS 207233 - 207919 896 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 202 99 Op 2 . + CDS 207930 - 209438 1271 ## COG0642 Signal transduction histidine kinase Predicted protein(s) >gi|307679012|gb|GL456785.1| GENE 1 214 - 567 429 117 aa, chain + ## HITS:1 COG:SP1699 KEGG:ns NR:ns ## COG: SP1699 COG0736 # Protein_GI_number: 15901533 # Func_class: I Lipid transport and metabolism # Function: Phosphopantetheinyl transferase (holo-ACP synthase) # Organism: Streptococcus pneumoniae TIGR4 # 1 115 1 115 120 119 51.0 2e-27 MIKGIGIDAVELSRIKPIVEKQGSFIQRVLTPNELTLFEKLSTKRQIEFLAGRFACKEAF SKAWGTGIGKVGLQDIEVLTEKTGAPYVANSPHNGKVFVSITHTDTMAIAQIVLESE >gi|307679012|gb|GL456785.1| GENE 2 597 - 1712 1523 371 aa, chain + ## HITS:1 COG:lin0885 KEGG:ns NR:ns ## COG: lin0885 COG0787 # Protein_GI_number: 16799958 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Listeria innocua # 1 370 1 366 368 367 48.0 1e-101 MVVGWHRPTRLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGA TGFCVALLDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLT PESNTPLRVHLKVDTGMGRIGFLTPEETKQAVRFVQSHKEFLWEGIFTHFSTADEIDTSY FEKQAGRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPS YALKPALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGFTVL VNGKRCEIVGRVCMDQCMIRLAEEVPVGSVVTLVGKDGNEENTLQMVAEKLETIHYEVAC TFSQRIPREYN >gi|307679012|gb|GL456785.1| GENE 3 1728 - 2105 427 125 aa, chain + ## HITS:1 COG:BH0522 KEGG:ns NR:ns ## COG: BH0522 COG2337 # Protein_GI_number: 15613085 # Func_class: T Signal transduction mechanisms # Function: Growth inhibitor # Organism: Bacillus halodurans # 1 112 2 113 116 154 69.0 3e-38 MVKRGDIYFADLSPVVGSEQGGVRPVLVVQNNLGNHFSPTIIVAAITAKMAKPKLPTHIG INSDETGIEKDSVILLEQIRTIDKGRLKEKVCHLRLDIMEEVDRALGISVGLSSDSAPAK ANSAT >gi|307679012|gb|GL456785.1| GENE 4 2424 - 3119 794 231 aa, chain + ## HITS:1 COG:no KEGG:EF0851 NR:ns ## KEGG: EF0851 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 231 1 231 231 384 100.0 1e-105 MMIVVLLMSSCLFLFVSYQLYLRLLVEKLDSEDRTLKRKINFYKYQKNSRLMIYLLFSVC LLSVLLLGIVYTYYQLNQRNIRMEQRIERLAQGQATQGDKIKKQAIKKTALNQFPWKQAV SAESAAVLTNYELQLAREWRPYLGETSITMIRSEKTQTLTLSVFSVGLSYHEFQTGQDNI VALIAALNSVKEITMIDFNFTYRDQEQTLVKSIDTYARETLETNLEPVVIS >gi|307679012|gb|GL456785.1| GENE 5 3144 - 4439 1451 431 aa, chain + ## HITS:1 COG:no KEGG:EF0852 NR:ns ## KEGG: EF0852 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 431 1 431 431 402 99.0 1e-110 MTKRRLIKKIKDISDDTLEKEVFFQPGFEPEKIISGIKPEQQEKEMATLRERLAYYQKKE TAFKKLQEENEQLKNQQETEKQALEEKNQSLLEILNQKEHEIFELEEQLETNSETTTEAT TLQTNLQNAEKQLTTVHNQMERLESELTQQVAELEKESAEQQQHIQTLHNQLAEEKGKLE KKGDITGMEKQVETLTTELEESTTTQQALQEQIEKLTVQLQKVEAEKQALQEAVQQEVIV KQRMEELKNELQNSLQQKNEAEVKLGRLQGVNDKHLAEKQVYEGELAALRKEVEAKEDNL EQVQKELKTLQAVSKNIEPSSEQLTELLRAKQQINDLLMKNQQLQEEALKSQQEIGEVMV SAKKEANRIVNEAKVEAKHLINSAELEMLNIGNRAKSISNEVEASKVEVLEIYRELEERL TKLTRLEQDNY >gi|307679012|gb|GL456785.1| GENE 6 4444 - 4746 195 100 aa, chain + ## HITS:1 COG:no KEGG:EF0853 NR:ns ## KEGG: EF0853 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 100 9 108 108 151 94.0 9e-36 MVSKKLMGARKLHCLGVFFLAVTLSGSAERLQAAAVSKEEQSLSQPLVRKNIVTEKSEYL VQANQSIWELAQDAQKPLNQFMKENQLRSSYIKKGTQLVK >gi|307679012|gb|GL456785.1| GENE 7 4979 - 5554 466 191 aa, chain + ## HITS:1 COG:lin1309 KEGG:ns NR:ns ## COG: lin1309 COG0681 # Protein_GI_number: 16800377 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Listeria innocua # 4 178 7 185 189 92 31.0 5e-19 MTAEEIKKKRQAYQKKQRVQVVKFFMPAILFAIFVFFFVLKTSSYPIAGQSMKPTLNAGE RVLVQRTKQVARYDVIAFKAPLASKGTYVKRIIGVPGDRIWVNEGKLYLSEEPIASDNEA LPENASRFDLSEKAAAQLRLFQKIPAGHYFVLGDNRTHSSDSRTFGFVEIQAIEGIVVFK MAPFKEIGKVK >gi|307679012|gb|GL456785.1| GENE 8 5609 - 7087 1361 492 aa, chain - ## HITS:1 COG:no KEGG:EF0855 NR:ns ## KEGG: EF0855 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 492 1 492 492 855 99.0 0 MLKRDFLEKPYDYMNDILLFLYNNKGQATRNELVDFFNISLPTLNEYLSFLEQFLKEEQL QENLTLTVLGDTLYLNKAPTFSMKAMIMLFLDKSIKFHMVQQLFHKNEINGGYFQQNYAI SSATYYRKIVELNDLLNEFNLRIKRGKLVGEEKQIRFFFFNFFWFIFEEKTDLEKELANQ YLGLIEILQEIPRITFDHTEILQIKLWMKISFRRMVLEPLPTISPHDVQLDRPLFEEINL SIHTYMKRIDRPYTINEAYMFYDFFCSMHNYSANAAFAFRLAKQQRIEKTYLNEMNRVIL TYLKARGYLSHYVLPIRLLYIENLLFQLHAQLYYFSGFILPFDYWTIQSLLKVLRHPFSE SEVYELVEIATTNFATKVTASKYQNQFTEINYTLILNHIAELNEKKITIGVYHSLSSAYS ELVAQKIQQSIAGKYPLKIEPYNAENHYDLLLMNTNNEQLVAQYDHYYIFSDISNRYDLQ SIEKIIQLLLGK >gi|307679012|gb|GL456785.1| GENE 9 7261 - 8013 783 250 aa, chain + ## HITS:1 COG:lin1914 KEGG:ns NR:ns ## COG: lin1914 COG2365 # Protein_GI_number: 16800980 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 1 247 48 296 298 158 33.0 1e-38 MNSVVNFRDIGGFPTQQGTVVKTGHFFRSGELVNVAQADQQKLVEDYQIKRIYDFRSAAE TQERPDDSIQGTNYLHIDILADIQAQTASLEGMLKTVGSPDEAMDMAYKEMVLSNSGRKG YQTFFENFLSYPQEAILFHCFAGKDRTGIGAALILSALGVEHSYILEDYLKTNEQRKTAN EQIIAQYQANGTPPAEIQQLETLLYVKKEYLATALQAIEKEFGSVEGYLKEGLGLPLSAK KDMLSLYTKS >gi|307679012|gb|GL456785.1| GENE 10 8092 - 8322 422 76 aa, chain + ## HITS:1 COG:no KEGG:EF0857 NR:ns ## KEGG: EF0857 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 76 1 76 76 97 100.0 1e-19 MKEGQEQFLTFILDRTKEDKKEKMQALLAEMFERQQTGKLDKMYLMTKAPKLLAYLKPEA IDEVKQVVSEFSKNMK >gi|307679012|gb|GL456785.1| GENE 11 8356 - 11148 3080 930 aa, chain + ## HITS:1 COG:L118462 KEGG:ns NR:ns ## COG: L118462 COG1511 # Protein_GI_number: 15673652 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 30 930 1 901 901 1284 71.0 0 MCRNIQAFVCYSLVFYAKVIQAQKKAGDFMKHIKNTWELFILDWKRIFKNPVATFLIVAL MIIPSLYAWFNIKALWDPYSNTGELPIAVYSDDQTATFQDKSVNIGDEVLKNLKKNKQLG WRFVDSKKELDKGVQSGKYFAGIYLPKDFSKDLLSFTSGDINKPKIEYSINEKINAIAPK ITSKGASSIQSQISEEFIKTASSTLIKTFNDIGYDIDKNMVSIQKVKSMILDTDANIGTI DTYAKQVTDLHGKMPELKEKLAKANDAMKYLPEVDALGEKIVELNGKMPSIKEQASVILT LQEKIPEIQNAGRQIAMIDEDFASVEQTMSEGIQEAKQGLEIIQQVQTALPDIRKLGDQA NDLGNVTLDGANKLQEALPSITNSVEVTLKSIQQVATTTTSVVATIRQALDDGQLTPEEK QHINEVVQDFTTNIQRQQQAINDIIAFMKQLQENAGNHDLDGAIAQLSHVNDLLTDFSNR LNQLNALVQAGDISGVQNYLNEIDEMATNISSIVGSVDVNGISNTVSTILNKLTSTIQNA QGQLNKAQQIDFEGLLSSTSQTVTNAISLLEKYQAEMPAIKQEIHDANTMLNGNMETIVN GINRGADLYKNDLPVIQDKVSKAAAFMQNDYPGIRKDLTNTLKTVNEKMPDVEAALDKAN ELIINDWPNIKTGLHKAANAIRKGEKEVDLGEILKLLKLDANKESDFFTQPVEVKEHAVY PIANNGSASTPFYTALCLWVGAVLFSSVATTDVYLEGKDKKRFSKREQFSARMFTFIVMG IGQALIVTLGNYFALGVDVRNPAYSVWFAVLIAITFMIMVYVLVALFGNVGKGIAIIILV LSISGGGGNYPIQVSGKFFQMINPFLPFTHAVNLLRESAGGIYWPNAWFAIWIMVGISVV FSIGGAILYPHLEHRSKKFAALAQKSHLFH >gi|307679012|gb|GL456785.1| GENE 12 11369 - 12538 1184 389 aa, chain + ## HITS:1 COG:CAC0606 KEGG:ns NR:ns ## COG: CAC0606 COG0053 # Protein_GI_number: 15893895 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted Co/Zn/Cd cation transporters # Organism: Clostridium acetobutylicum # 21 386 32 400 403 276 38.0 5e-74 MIQALLQRYEKKIERRKLEKRTAFGAFAGRIGLVSNLFLFVSKFMIGLLSGSVSIMADAI NSLSDTISSVLTLVGFYIAGKPADKEHPYGHERFEYISGMLVSLVITFIGFEFLTTSVDR ILHPESIKVTPILFAVLALSIGIKIWQGLFYKKVSAKIDSQALVASAKDSFNDVYTTLAV LISAFIEGVTGLRIDGYIGFLIAAYIIYSGLQLIREFINELMGMRPSQTEIDEMKNVLSK IETIVGYHDLLIHNYGPSQTFASVHIEIDDRWDLNKAHQTIDAIEAKFKEELDVNLVCHI DPVNLYDPTQQFVHQTIKKIIRSFDASLKVHDIRLVTHGEEPKILFDLVLPAESKLSEFE LGVEIQRQVYEKIGRYKVEITFDHTYLLQ >gi|307679012|gb|GL456785.1| GENE 13 12836 - 14659 1780 607 aa, chain + ## HITS:1 COG:lin2235 KEGG:ns NR:ns ## COG: lin2235 COG0531 # Protein_GI_number: 16801300 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Listeria innocua # 4 607 5 607 607 696 58.0 0 MADLKRLFIGKPLKSAENDEHKLSRFAALALLSSDALSSIAYGTEQIVVVLVTLSAAAIW YSLPIAAFVIILLISLTLSYRQIIHAYPHGGGAYVVSSENLGRNAGLLAGGSLLVDYMLT VAVSVSAGAEAIISAIPALYGHQVAISIGIVILITLMNLRGLRESASFLMLPVYSFIAII TLLIVVGLFKIVTGAQPLNATALPGAVVPGISIALVLRAFSSGSSSLTGVEAISNAVPFF KKPRAKNAAGTLALMATILGFFFVGITFINYWYGIVPKEEVTVLSQIGKAVFGQNILYYL LQFATALILAVAANTGFSAFPVLAYNLAKDKFMPHMYMDRGDRLGYSNGILTLAAGSIVL LLIFQGSTERLIPLYSIGVFIPFALSQSGMVVKWRKETKNWLPKSIANIVGAFISFAIIA ILFIYRLGDIWPFFIIMPVLIYAFYRVNTHYKNVAEQLRLEDGAQLHEFDGNTVIVLVGN VTKANVVALNYARSIGDYVVAMHVSMDENVEKEKEIQEEFKKHFPDVRLSIVHSSYRSLQ NPILRYVDLVSKNATKHNYSTTVLVPQFVPNKRWQNILHNQTSLRLRIRLAWRENIIVAT YSYHLKK >gi|307679012|gb|GL456785.1| GENE 14 14695 - 15159 256 154 aa, chain - ## HITS:1 COG:L69304 KEGG:ns NR:ns ## COG: L69304 COG0454 # Protein_GI_number: 15673990 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Lactococcus lactis # 6 149 4 148 152 101 37.0 5e-22 MSNYTIIDLNQQPHLIPSAAQWFSQKWQIPAEAYQGSMQEMLTSENHVPHWWVCLNKQQD IVAGVGVIDNDFHNRADLTPNLCALYVEPTFRHQGLAGILLTTVGDFLANSGFKKLYLLT DHTTFYERYDWEFLTMVTTEEQSCARIYQKQLRQ >gi|307679012|gb|GL456785.1| GENE 15 15231 - 15893 885 220 aa, chain - ## HITS:1 COG:BS_opuCD KEGG:ns NR:ns ## COG: BS_opuCD COG1174 # Protein_GI_number: 16080433 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, permease component # Organism: Bacillus subtilis # 4 217 1 214 229 251 65.0 6e-67 MNNMNLFQQFIYYFQQNGGYVFQQFLRHFLISIYGVIFAAIVGIPIGIMISRKRSLANWI IRLANIIQTVPALAMLSILMLGMGLGVNTVVVTVFLYSLLPIIKNTYTGMIQVDRNILDV GKGMGMTKVQLLYMVELPLSVSVIMAGIRNALVVAIGITAIGAFVGAGGLGDIIIRGTNA TDGASIILVGALPTAFMAIITDWVLGIIERRLDPASKHSN >gi|307679012|gb|GL456785.1| GENE 16 15897 - 16817 1228 306 aa, chain - ## HITS:1 COG:BS_opuCC KEGG:ns NR:ns ## COG: BS_opuCC COG1732 # Protein_GI_number: 16080434 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) # Organism: Bacillus subtilis # 1 304 1 303 303 342 55.0 5e-94 MKKKLKLSLLFLSSLLLLAGCSLPGLASTSDDNTVAITGGITSEAQILGSIVADMVEHYT DKKTNVINNLATTTINHQAMLNGDASISAARYTGTDVTTTLGLPAEKDPKKAFNLVQSEF EKRYQQTWFPSYGFENTYVFLVTKETAEKYNLKTVSDLGKVADKLVAGVDTAWITREGDG YEGFKKEYNFQFKSILPMQIGLVYDAVNAGKMDVILGYSTDGRIGSYDLVMLKDDKRFFP PYDAAPVVSDKLLKETPEIKDVLNRLDGKISTKKMQELNYQADNDLIEPAVVAERFLKEN NYFEGE >gi|307679012|gb|GL456785.1| GENE 17 16820 - 17455 927 211 aa, chain - ## HITS:1 COG:lin1466 KEGG:ns NR:ns ## COG: lin1466 COG1174 # Protein_GI_number: 16800534 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, permease component # Organism: Listeria innocua # 3 211 6 214 218 244 65.0 1e-64 MSSFFQEYGSEMISKSIEHIYISFFALLLGVAIAVPVGVWLTRLPKVANIVIGLTSALQT VPSLALLALMIPIFGVGKTPAIIALFIYSLLPILRNTYIGMKNVDENYRDVAKGMGMTNL QSIFSVELPIAMPTIMAGIRLAAVYVIAWATLASYIGAGGLGDMIFSGLNNYQPELIFGG TIPVTILALLADVLLGLLENRLTPKALREGE >gi|307679012|gb|GL456785.1| GENE 18 17459 - 18643 1387 394 aa, chain - ## HITS:1 COG:lin1467 KEGG:ns NR:ns ## COG: lin1467 COG1125 # Protein_GI_number: 16800535 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, ATPase components # Organism: Listeria innocua # 1 393 1 392 397 488 65.0 1e-138 MIEFQHVSKFYKGGKVAVDDINLSFDKGEFICFIGTSGSGKTTSMRMLNRMTDPSKGKIL IDGQDIQKINPVELRRQIGYVIQNIGLMPHMTIRENIVLVPKLLKVPVEERNKIAEKMID LVELPREMLDRYPNELSGGQQQRIGVVRALAANQDIILMDEPFGALDPITRDSLQDLVKD LQERLGKTIVFVTHDMDEALKLANKIAIMSEGKVIQFDTPDNILRHPANEFVEELIGEDR LLQAKPDFTTVDEVMLNSAITITPEKSLQEAIKLMREKRVDTLLVVDNSHVLKGFIDVET LDQQRGKASSVGDILNKDVFFVQKTALLRDALQRILKRGLKYVPVVDEQKRVVGILTRAS LVDIVYDVIWGDETTISEAVEAKQSESETDKEEA >gi|307679012|gb|GL456785.1| GENE 19 19279 - 20169 995 296 aa, chain - ## HITS:1 COG:lin0752 KEGG:ns NR:ns ## COG: lin0752 COG0346 # Protein_GI_number: 16799826 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Listeria innocua # 6 296 6 295 296 276 48.0 3e-74 MHAQFHHVSLLARHGQENQSFYTKLLGLRFVKNTVNQDNNRMPHYFYGDYQGTPGSLVTF FIVPLLGNRYEEKNYLATIGLKIPQNSLSFWEQRLTENKIPFNKKEKSLHFSDPDDTHII LTEVPENPLKETLVVSNDIPAAVQIIGLASTEFHVPDSEKTLAFFETFLGWQAVGNTIIL SETESFSVHQTTSDKTSRMGRGSMDHIAFSVADDEALQELHTRALAQGWEIEMYVSRGYF KSLYIREPGGNRVEFATLTPGFTLDEPLEHLGETLALPPFLEPKRTAIEANLYKDM >gi|307679012|gb|GL456785.1| GENE 20 20335 - 21366 1225 343 aa, chain + ## HITS:1 COG:SP1416 KEGG:ns NR:ns ## COG: SP1416 COG0809 # Protein_GI_number: 15901270 # Func_class: J Translation, ribosomal structure and biogenesis # Function: S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) # Organism: Streptococcus pneumoniae TIGR4 # 2 342 1 341 342 550 77.0 1e-156 MLSTEDFDFDLPEELIAQTPLKDRASSRLLVVNKETGDMEDKHFHDILDELQPGDALVMN NTRVLPARLYGEKPETGGHLEVLLLTNTEGDTWETLIKPAKRAKVGTEIQFGDGRLKAVV KEELEHGGRIIEFKYDGIFLEILESLGEMPLPPYIKERLDDPDRYQTVYAEENGSAAAPT AGLHFTKELLEEIKAKGVHLVYLTLHVGLGTFRPVSVDNIEEHHMHSEFYRLTEEAAKQL NEVRQAGGRIVAVGTTSIRTLETIGTKFNGEIQADSGWTDIFITPGYQFKVVEAFSTNFH LPKSTLVMLVSAFAGKDLTLAAYQHAIEEKYRFFSFGDAMFIK >gi|307679012|gb|GL456785.1| GENE 21 21766 - 22014 246 82 aa, chain - ## HITS:1 COG:MJ0272 KEGG:ns NR:ns ## COG: MJ0272 COG1476 # Protein_GI_number: 15668446 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Methanococcus jannaschii # 8 72 13 77 79 68 49.0 4e-12 MRKKKKSSFESSIHVYRAMARMTQQDLANRVGVSRQTIIQLERNKYNPSLLLAHDIANVF GVTIDDVFTFKETLNDDVEQEA >gi|307679012|gb|GL456785.1| GENE 22 22894 - 25539 3169 881 aa, chain + ## HITS:1 COG:lin0814 KEGG:ns NR:ns ## COG: lin0814 COG0474 # Protein_GI_number: 16799888 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Listeria innocua # 5 869 5 868 876 878 54.0 0 MEAYKQSVDTVTKEVSVNTETGLTQQEAQQRLKENGRNQFEEAKKDSVLKKFIHSLSDFT TIILLVAAAISFYTAIVTEHGEYFEGILIIAIVIINAVLAIVQEGNAEKSLAALQDMNKQ SSAVLRDGKVIEVDAEELVVGDVLVLEAGSMITADARLIQASQMRVEESALTGESEPVEK DPTYVGHDDDGLGDQINMIFKGCTVVNGRGRAVVTATGMNTEMGKIAGLLNNSDQQKTPL QKRLNQLGKRISLLALGAAAIVFIIGELQGEPLLEMFMTAVSLAVAAVPETLTVIVTLTL AYGVQKMAKKHAIIRRLPAVETLGTANVICSDKTGTLTQNKMRVRRVWHRGDEVTDTEDA MTDEAMEVLKMAALCTDVIVEKEGDELTVTGNPTEAAIVRAVEENYHTKEELEEKYPRIG EIPFDSERKMMTTVHQWGKKYISITKGAFDVLLPRFGFGDVDQAAIVNDRFGKRALRVIA VGYAVYDEPPKEITSEALEKNLRLLGLIGMIDPPRPESKGAIARAKKAGIKTVMITGDHV VTASAIAKELGILKDKSEALSGSELKKMSDEELDKRVKDLSVYARVTPEDKIRIVQSWQR SGAVVAMTGDGVNDAPALKASDVGCAMGITGTDVAQGASDMILTDDNFATIVDAVAQGRA VYRNIRKAINFLLSCNISEIFIVLIAMLLGWGAPFTAVQLLFVNVVADGLPGFALGKEPA EKGIMDEAPIPKNEGIFARGLWQKIGINAAVFTVITLFGFYLGAFVPGVSAYVSNSYEVG QTVAFLILAYSSILHVFNVRSANSVFRVKLSSNKSLFEMVVLALLITTTIALLPFTQELF GLVHISLNHWMLAIFLSFVPIFVNEMIKFHFSEVEEEEEVI >gi|307679012|gb|GL456785.1| GENE 23 25873 - 27879 1902 668 aa, chain + ## HITS:1 COG:SPy1414 KEGG:ns NR:ns ## COG: SPy1414 COG3158 # Protein_GI_number: 15675333 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transporter # Organism: Streptococcus pyogenes M1 GAS # 12 653 11 647 666 751 58.0 0 MLHKAEGFDRRKFTMAGILVAMGVVYGDIGTSPLYVMKAIVGDNGGLARVSESFILGSVS LIFWTLTILTTIKYVVIALNADNHGEGGIFSLYTLVRKKSKYLIIPAMIGGAALLADGVL TPAVTVTTAIEGLRGIPAFFERFGNDQTIIVVITLTIILILFSVQRFGTELVGKAFGPIM FLWFTFLGIIGLMNFSQDWTVIRALNPYYALQLLVSPENKLGLFILGNIFLATTGAEALY SDLGHVGKMNIRISWPYIKICLILNYLGQAAWLLTVKENPEMQALAEINPFFQMIPRGIL VFGVVFATIAAVIASQALISGSYTLVSEAIKLKLLPRLKIIYPGSNIGQMYIPAVNLILW LACSAIVLAFRTSTHMEAAYGLSITITMLMTTILLLFYLLDKIPAWSAYLISLFFAAIEV VFFFSSAAKFFHGGYVAVGMAVFLLCIMIIWERGNEIKEATAEQVSLEKYVPQLKALKED TSVPMYQTNVVFLTSDRVDGEINRNIIYSILDKQPKRANVYWFVNVQVTDEPFTQEYSVD MLGTDFIVQVQLYLGFHISQEVNVYLRQIVHDLMKTGRLPKQPQRYSLTPGREVGDFQFV LIQEELSNVSELKKWDRQIMQAKLAIKNLTTSPESWFGLEYSEVKYESVPLIIGPQRKTH LVERKNRS >gi|307679012|gb|GL456785.1| GENE 24 27949 - 28647 636 232 aa, chain - ## HITS:1 COG:no KEGG:EF0873 NR:ns ## KEGG: EF0873 # Name: not_defined # Def: Cro/CI family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 232 1 232 232 422 100.0 1e-117 MKITTKQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKAC DTTVDWLLYGDFDRFVRQLLKENFQNKQLLKPPFFTQLMGRLSEEQLSYHDSLKIMIQAQ KLQQSFYAFPLTVEAPSHSQESISIYEPTTAEEQSDQSYYHPFILSELHELFTHSQNPEL DYSLIIAFLPLLKVDQLTEPQKEVLLAIFKRMNSFKDQTLLNEFFVELQYLL >gi|307679012|gb|GL456785.1| GENE 25 28959 - 30917 2267 652 aa, chain + ## HITS:1 COG:L70979 KEGG:ns NR:ns ## COG: L70979 COG2217 # Protein_GI_number: 15672833 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 1 652 58 695 695 557 49.0 1e-158 MHMGNFKQKFWLSLILAIPIIVLSPMMGFQLPFQFTFPGSDWLVLILATVLFFYGGQPFL SGARMELQQKSPAMMTLIAMGISVSYFYSLYAFYMNHFTNQAHVMDFFWELATLIVIMLL GHWIEMNAISNAGDALKKMAELLPDTVKRMTEHGEEEIPLQDVQEGDRLIVRSGDKIPTD GKILKGSTTVDESMVTGESKTVEKNIGDSVIGGAVNGNGMIEISVTGTGENSYLSKVMEM VKQAQSEKSKLESISDRVAKWLFYIALFVGVLAFIGWLLVTKDLSLAFERMVTVFIIACP HALGLAIPLVIARSTSIAAKNGLLLKNRNALEQANKVEYVLLDKTGTLTEGQFTVTGLEL MSKQFTREEALKYIGALEKNANHPLAIGIMNYLNKQAVQPYEAHNLQALSGVGLVATVQN QEVKIVNEKEVARLQLTFDETIKTNYQEQGNTLSYLIIAGQLVALLALGDKVKPEAKTFI AELQAQGITPVMLTGDNQTAASAVANYLGMKEYYAELLPEDKEKIVQQYLTEGHQVMMVG DGINDAPSLARASIGIAIGAGTDVAIDSADVVLTDSDPKDILRFLDLAKQTRRKMIQNLW WGAGYNIVAIPLAAGVLAPIGIVLNPAVGAVLMSLSTIIVAANAMTLHISKK >gi|307679012|gb|GL456785.1| GENE 26 31041 - 32465 676 474 aa, chain + ## HITS:1 COG:no KEGG:EF0876 NR:ns ## KEGG: EF0876 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 474 1 474 474 860 98.0 0 MDFKELLSFEHKNMLELLDLLQQEQTFSVLMAAEKLKVSDKTIHCYIQRFEKKQETFKIE GLCKIYTTTKGIVKYRELCVCGLARFRQKFCYFIPEFYILRCLIEERINYAQLTQVLGLQ ESTLRKKLSNIRRWLVNFDIIVRQKHYDLTGNEWQIRQLIVCFYLFFQESCLEENREMTR KIITFFELDLNVAQQNHLSWLIYIWERRYRGGHEISVPNANLFQQTSAFFYLFRVEVLST SFMSLKEQKALFVILEAHFGGCFGKRARKYFIHEQMKIESLCLKTAIFIMKEIRRNFTQH HFNYQEIHLCRFLSTHMNSLLDGQAWLPAHKQEQTLAARYQQTWHRLQKLIRLLKRLYPV FTSVKERELTSCYFYHILDLFDPILYEKKYIICLLTDFPPEKEQALGQSIKSYFSEKKNI TIIHGKPTYQLHQAHLLIVNHLFQMNVALSSETVVYLPEELSPAFFEKVEANLS >gi|307679012|gb|GL456785.1| GENE 27 32534 - 33445 1142 303 aa, chain + ## HITS:1 COG:lin0643 KEGG:ns NR:ns ## COG: lin0643 COG4989 # Protein_GI_number: 16799718 # Func_class: R General function prediction only # Function: Predicted oxidoreductase # Organism: Listeria innocua # 1 303 1 305 305 388 60.0 1e-108 MKQLQFGTSDETVSSVILGCMRLNGAENPQQVIETAYDHGITFFDHADIYGGGDCETIFG KALKESTIRREDIFIQTKCGIRQGFFDFSKAHILEAVEGSLQRLGVDSVDALLLHRPDTL VEPEEVAEAFHLLEKQGKVRYFGVSNQTPGQIELLKTAVKQPLLANQLQFGIKHTGMVDQ GLQTNMEISGSIDYDHGILDYSRLKQMTIQAWSPYQYGYFEGVFIGNEKFPELNQKLSEL AEKYQTTPTGLASSWILRHPANMQVIAGSMNLGRIEEIAKAADIVISREDWYDIYRAAGN VLP >gi|307679012|gb|GL456785.1| GENE 28 33633 - 36281 3387 882 aa, chain + ## HITS:1 COG:BS_polA_2 KEGG:ns NR:ns ## COG: BS_polA_2 COG0749 # Protein_GI_number: 16079961 # Func_class: L Replication, recombination and repair # Function: DNA polymerase I - 3'-5' exonuclease and polymerase domains # Organism: Bacillus subtilis # 322 882 1 560 560 640 60.0 0 MTKKKLLLVDGNSVAFRAFFALHNSLERFKNKNGLHTNAIYAFNNMFENVMQKEMPTHVL VAFDAGKTTFRTEFYSEYKAGRSKTPGEFKEQMPYIRELLEGLGVKYYELPNYEADDIIG TLANKVDKDEFDVVVLSGDRDLTQLATDTVKVDITVKGVSDIESYTPEHIAEKYDGLTPK QIIDMKGLAGDTSDNIPGVTKIGEKTAIKLLKQYGSVEGVYENIDEMKKSKMKENLINDK EQAFLSKRLATIEVNAPVEVNVEDLAYEGKNLEKLVPFYKEMDFKQFLAKLDITEEPVEM EDILFEVVEDQLTNEMFTDDMALYVEMMEDNYHTSPIVGLAWGNNKKIYTTNNLAVFESQ PFIDWLMDETRKKNVYDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVAQ HYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHLARKIKAIQFLTSKLDSELTEKNQADLF YKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEFNLNSPKQL GVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYRQIAKIQSTYVEGLLKV IQPDNKIHTRYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYS QIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVY GISDYGLSQNLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLS DINSRNFNLRSFAERTAINTPIQGSAADILKIAMIEMARRLKEEKLQATMLLQVHDELVF EVPESELEQLNQLVKEVMEHAVSLHVPLITDSSWGKTWYEAK >gi|307679012|gb|GL456785.1| GENE 29 36381 - 37223 978 280 aa, chain + ## HITS:1 COG:BH3152 KEGG:ns NR:ns ## COG: BH3152 COG0266 # Protein_GI_number: 15615714 # Func_class: L Replication, recombination and repair # Function: Formamidopyrimidine-DNA glycosylase # Organism: Bacillus halodurans # 1 273 1 274 274 285 52.0 7e-77 MPELPEVETVRKGLEKLVVGKTIQEVIVFWPRIIESPEVDVFQGQLAGQTIEGIERRGKF LIFKLSDNDMISHLRMEGKYEFHQADDEIAKHTHVMFTFTDGTQLRYLDVRKFGRMTLVP KNQGHQYKGILALGPEPTPDVFQLATFQQGLKKHHKAIKPLLLDQKLVTGLGNIYVDEAL WQAQIHPEQPADSLKPAEVATLYQAIIDVLARAVEAGGTTIRTYLNALGEAGTFQVALNV YGQTGLPCNRCGTPIVKTKVAQRGTHYCPQCQQLKGRRLK >gi|307679012|gb|GL456785.1| GENE 30 37220 - 37819 659 199 aa, chain + ## HITS:1 COG:BS_ytaG KEGG:ns NR:ns ## COG: BS_ytaG COG0237 # Protein_GI_number: 16079958 # Func_class: H Coenzyme transport and metabolism # Function: Dephospho-CoA kinase # Organism: Bacillus subtilis # 1 190 1 191 197 170 49.0 2e-42 MTKVLGITGGIATGKSTVVALFKKAGYPIVDGDIIAREIVAKGQPALAAIVETFGPEIVL TTGELDRKKLGQLIFASPQKRELLNETLKPFLRKEILRQIEEAKKKASLVIVDIPLLYEA HYEAIMDQVAVVYVPEKIQKERLMARNQLTEEEAQQRIASQWPIEMKKERADIVFDNQGT REETEQQVKKWLEEQTGKK >gi|307679012|gb|GL456785.1| GENE 31 37999 - 38481 536 160 aa, chain + ## HITS:1 COG:BH3146 KEGG:ns NR:ns ## COG: BH3146 COG1327 # Protein_GI_number: 15615708 # Func_class: K Transcription # Function: Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains # Organism: Bacillus halodurans # 1 150 1 150 153 181 61.0 4e-46 MRCPRCHHNNSRVIDSRQADDGRAIRRRRECENCSYRFTTFERIEAAPLLVIKKNGDREE FNRDKILRGLIRSAEKRPVAMEQMVQIVDNVENRVRSLGENEVSTTLIGEYVMEDLVNLD EIAYIRFASVYRQFKDMSVFLKELQDIVDKAKSSSPDSEN >gi|307679012|gb|GL456785.1| GENE 32 38497 - 39906 1705 469 aa, chain + ## HITS:1 COG:BS_dnaB KEGG:ns NR:ns ## COG: BS_dnaB COG3611 # Protein_GI_number: 16079951 # Func_class: L Replication, recombination and repair # Function: Replication initiation/membrane attachment protein # Organism: Bacillus subtilis # 20 465 20 465 472 120 25.0 7e-27 MKGNRQRIQPKNIFQAVIDSPLSDQEKEVLTFLYQPIVGANAFSLYWLLLSETTDSEENG SLFHADLISLLDLSCQQLEEACYKLEGIGLLETYKKTDRELGDCYLYYLKAPETAARFFK DEVLALVLFNRVGQRKFDQLVQKFQPHPTKTEGYQNVSASFQEVYAFKEEQIVSEANQLT TIQETFSQKEKSKKISVSTDSFDWHYFVEGLHRLGLQLPEDEASFQEEVYVFHQLYGINE LDMVDFASKSFDYYTSRILPKELVRTIHQAFDPDKKPQPTNVVTNKQAQLTVEEQQTYRY NALKMNGFSELDIQMIMDSEKNPPIQYLEALKNSRGGYTTPQERSLVKYLVAKSGLPTSV INILINYVYNIQQQPTLKAEYVNRIANEWGQSGIHSPEKAIEHVRELAKQSQTKQKQRQQ NYSGKRQTVRQERLPEWADQPNDETKLSPEEQAELDRQIQEFLNQGGDQ >gi|307679012|gb|GL456785.1| GENE 33 39906 - 40835 1079 309 aa, chain + ## HITS:1 COG:lin1595 KEGG:ns NR:ns ## COG: lin1595 COG1484 # Protein_GI_number: 16800663 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Listeria innocua # 1 307 1 306 307 273 46.0 3e-73 MEDVGKEMSKIIQKRDINERYEELVNEVLKDQDVQAFIQANRERLTDEDIRKSYAKLYEF VQEKKKFQLNDPAMIAPGYEPRLMLNFHYIDVTYVPTADLIARQKEEEIRNRVRAMDMPK DVREANLRDFDPSSQGRAKALAEAMQFLREYPATPKEFHKGLYLQGPFGVGKSFLLGAMA NALAERGFTTTIVHFPTFTVEMKQAIGRDQVGEKLDAVKKSPILMIDDIGAESMTSWIRD DVLSVILQYRMQEQLVTFFSSNLDLKALEEHLTVTQRGEQEPLKARRIIERVRYLSKEIT MTGNDRRNG >gi|307679012|gb|GL456785.1| GENE 34 41061 - 42125 1030 354 aa, chain + ## HITS:1 COG:no KEGG:EF0884 NR:ns ## KEGG: EF0884 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 354 4 357 357 645 99.0 0 MNPKIQRLMSTDKQHFLTKHEFHTKETAERKDLLKFFIETRLKTDGGFLTNYLPDAERKD VATGHELLSESSGLYLRNLAFDTQGRFDNFYKQTKDTFYDGVQFSYRIDEQGNKYNVNAS IDDLRIIRSLIEAGGHFKTDQYDQEIKKLGKSFMKTSMKDNILIDFYDSKSKQQSSETSL FYIDLITLGYLYKEFGISADYLQYHYQLIDDGYISDDLPLYQTKFNHQTNKYENNGTLNI IESLLTIVHLSEVGMAKQTSIDFVRKQVQQGTLFNSYDLNGSPVDKNQSAASYAIAALIG VAENDKELYRAAITVLNNFQIMDSSSPIYGGFGDKVTKQVYSYNNLMALLAYDF >gi|307679012|gb|GL456785.1| GENE 35 42139 - 42498 253 119 aa, chain + ## HITS:1 COG:no KEGG:EF0885 NR:ns ## KEGG: EF0885 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 109 1 109 506 200 98.0 2e-50 MEKIKKYMNSAFEWLSRYISPSLLAVLGIGLVTSILLFVYPINGLGDNGEYFRVLNSNSL YRVNGDSYDNVAYFVKDFSIMRYFNETTTHFVSTQQFFITIAIWLNKLFIVKHFSIFVS >gi|307679012|gb|GL456785.1| GENE 36 42594 - 43658 876 354 aa, chain + ## HITS:1 COG:no KEGG:EF0885 NR:ns ## KEGG: EF0885 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 354 153 506 506 654 99.0 0 MLVIFILGDTSYTIYFNSFYTEATSFLLSVSVLAFSVYFYRVTKPRTWLRRIVLVILAQA VVLLIGTTRQEYLLIIGVIIAGLGFFVYLSQRYQRLSMTAFLIALIGFTTLAAFIVPNDI YERDVYHSMTRGVMKDSKVPDKRMSEGGINPQYGLQKGRSYFEEYSPVSPTSEQMKKDFF DKTSFGWVLLNYLNYPSELWQGLNSAVPNVYLVKPNNVGNFEKTTGRAPLEQSKFFMVYN RIKASFFPKNFAFYLLLGVILFGLYGVGLYRGLKRNEPRLVFRFFLMTGIYLNLLVVFIS TIIIDGDSDLVRHLFLVSVFLDFLLLQIVSDVIGKRMWQDTTPQVIGEVEGIEK >gi|307679012|gb|GL456785.1| GENE 37 43648 - 45231 1458 527 aa, chain + ## HITS:1 COG:lin0532 KEGG:ns NR:ns ## COG: lin0532 COG5298 # Protein_GI_number: 16799607 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 25 521 22 498 499 97 22.0 9e-20 MKNKQYLIGWVCFLLFFVFCGFAKPALAAPSKHVLLVYDSLNIAGKKENDVDALQRVLTS FGVEVQSVAVSDYVPGELLNDGYDSLISMVNWPEQAGVIASDFLADRVHFKGKQLHIGRN MRDDEKQYFSGTWKELSHRQYRLEDEKNRFSQVLPFQDQSVVLENTQGQTVGRLKTQELA PEEYPFGVIENGHAFLPMFERKGAVFLESLDVISQWLESEKMSRPFLTISDFNPLRDMSV ATYLQEELVKTTYPYILSSTSVSQNNTILPYKLFTNALRAFASTGVIFLETPVVNNVDLN DQRALKQLMEQQISLLVDRHVYPVGISAPGYWNQDLQYQEDGLAISDTVILRENPPIERV FYRNQTGESITYKNALFDLPYDYLSGIEWTDKDNPNDYRFPMPTTISFSFPNSKKEVDHL IQEVKEAPIVFSVSEADQHFTVQTQTQKIEFRNNRFFLNNQIVNGLADTGASTVEKQRFT GLFSFFFSITNNILIGVVTLTLIILIILFMIGRKNYRSKYINKEEDK >gi|307679012|gb|GL456785.1| GENE 38 45228 - 46490 1185 420 aa, chain + ## HITS:1 COG:lin0533 KEGG:ns NR:ns ## COG: lin0533 COG1215 # Protein_GI_number: 16799608 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Listeria innocua # 1 419 1 416 416 580 68.0 1e-165 MTIADIVMLTATIIIWSLLIVNILLVIFGYVYYLKTDPVAPPPVEDEDAPFVSIMVPAHN EGIVIVRTVEALLNFNYPQDRYEIIVINDNSSDNSAELLANVQKKAVNRNLQIINTDNIT GGKGKSNALNIGFKQAKGDVIAIYDADNTPEPNALRYLVGELIASEEYGAVIGKFRTRNR NASLLTRFINIETLAFQWMAQAGRFQLFKLCTIPGTNFIVRRSIIEAIGGWDDKALAEDT EISFRIYMMGYKIKFQPKAVTWEQEPQTLSVWFRQRTRWVKGNIYVIVKNAKLLFNPKAS RIRFDILYFLSIYFLLMTSLVLSDIMLVLSMSGYLTTTLQGFSNSLWLLAILLFIFSTFV SITTEKGEMTLENILIIALMYITYSQMWLVVAAYGMVMYIKENVFHKQTQTKWYKTERFK >gi|307679012|gb|GL456785.1| GENE 39 46505 - 48571 1922 688 aa, chain + ## HITS:1 COG:no KEGG:EF0888 NR:ns ## KEGG: EF0888 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 688 1 688 688 1279 99.0 0 MKQKTVTLIGLFFLAILIGVASPTVYAENKEQDNHTFTQPFQNKTISLTGTSVRSTMYFT KIDYWDVKKASFNMTYQITQLKNNQTSDLTVAVNGVKFYSWRPENTTGIQQKTIEIPLEL IKETNTLTVEGQIINQAGNDMYNLIETPANWLTMYEGSNVNFQYDLQLPENTIHSFYNHF VGADTIANKHSVILTPENASEKELAAATHALAGAARLITTSEELLPMASLNKEQSAPYQL IIASYDKLPDQYKSQIDSKRVEDQAVLKFFNQPDKHVLVATSKDEDLLVRAGRYLANYEL MTQTDKEETTVDENTDTFSSTLEFDGNYPLTSTGDKLEGAYHQEQTYFVNLPVDRNNANG SRVHLHFKYAENLDFDSSLVTVYANDKPIGSKKLSAARANGDELNLEFPKNLEIADSFVL KVAFDLNVKSPEVLRNGQTPWAFIENNSNAFIQTEELNDILFNNYPNIFIRSRSFADLAI LLPEKMDDNYFKVLTNLFNLIGNYAESNVGEITYYKKAPKNAALENHNLIIFGTPKDNPM IRKLNDQLYFHYDKDFTRFVSNEKLSIEKDYGKQIGTAQLMFSPYNAKAAALILTGAKSQ GVFLASTQVNTEKNTSMYKGDAIVVDPNYRRYDYRFKKRVSNVSNESLGKRIVNNHKLMI YLFVFLIGMTIIGLSAFFIVKKNLKGGE >gi|307679012|gb|GL456785.1| GENE 40 48573 - 49421 960 282 aa, chain + ## HITS:1 COG:lin0535 KEGG:ns NR:ns ## COG: lin0535 COG2199 # Protein_GI_number: 16799610 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Listeria innocua # 4 282 2 284 284 121 27.0 1e-27 MNQKRVTLLLDLTLLVGIVLVVGTTIFMALGTNDFFVDLSCLLISVILIIVTYFVGITAG LTFSLIFIFLQLTYVVYQYVYHDLFSYGSLFWLIMPPLYCLTIYAVTYQIRTIEEENIRL RKETSRLNALDAVTNLRTAKMYEEGFDLFSDISTRYEAPLYLVVIRVAYWESIRNLLSPE QKNELLQIVTAAIKETTDDRFLPYFIDGTPPTWALLIFRDGDDGYTTRKEFKQQAQEKFT HSETLRNITLTLQVSYTKYDPAEFNNASEFLGDGINSLQYDV >gi|307679012|gb|GL456785.1| GENE 41 49437 - 49748 394 103 aa, chain + ## HITS:1 COG:no KEGG:EF0890 NR:ns ## KEGG: EF0890 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 103 1 103 103 173 100.0 2e-42 MTEKLAVFTGKLAEAGVLNETQPLSMRLHLENIQAESDPESIVPLFSHGVILNILVEQLE ESIPLSHLKKGTKVRFTVVGLPPMTMSIPPHVGGQAIELIEEI >gi|307679012|gb|GL456785.1| GENE 42 49796 - 50950 1457 384 aa, chain - ## HITS:1 COG:lin2354 KEGG:ns NR:ns ## COG: lin2354 COG0436 # Protein_GI_number: 16801417 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Listeria innocua # 1 383 2 383 383 490 63.0 1e-138 MDRKNIATRYQQPTENLLMDIATLAKKTPNLIDLSIGDPDLITDERIIEQAANDAKNGHT KYTASDGSEAFIEAVIQFYQSHYQLSFQPNQVRATVGALHGMYLALQVILNPGDEVIIHE PYFSPYKDQVLLADGVPVFLPTYEEDGFQIDVALLKEKITPKTKAIILNSPNNPTGAVFS EETFREIAQVAIEHNLYILSDEVYEAFCFQETFTPMATFAPENTITFGSFSKAFAMTGWR IGYMIAPDYINEVAKLINEGVTYSAPTLSQQAGIYALQHFDEFVDPIVEVFQTRLEYVAQ RVAKIPFLSLHPVKGSIYAFINIQKTGLTSVPFVEKLLKETQVLVIPGKAFGETTGDEYI RLAATQNLDLLKEAFDRIERMTFE >gi|307679012|gb|GL456785.1| GENE 43 50966 - 51688 634 240 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 239 1 242 245 248 52 1e-64 MINIKNLQKTFGKNEVLKGIDLEIEAGEVVVIIGPSGSGKSTFLRCLNLLETPTGGSVEF EGKNLLDKNTNIDQLRQKMGMVFQNFNLFPHKNVLENLTISPVKVKKEAAAEATEHALSL LEQVGLSDKKENYPAQLSGGQQQRVAIARALAMRPDVMLFDEPTSALDPEMVGEVLSVMK NLAIEGMTMVVVTHEMGFAKEVADRVIFMDAGIIQEEGTPEEIFDAPQNPRTQDFLRKVL >gi|307679012|gb|GL456785.1| GENE 44 51681 - 53144 1692 487 aa, chain - ## HITS:1 COG:lin2352_1 KEGG:ns NR:ns ## COG: lin2352_1 COG0834 # Protein_GI_number: 16801415 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Listeria innocua # 5 271 3 271 271 312 62.0 8e-85 MTKCKKWLQTILPILFLLLSLLPIKETFAAENDPVYDKIIQKGELVVGLSADYAPYEFHA KVDGEDKIVGFDISIAQKIADDLGVKLKIEELGFDALLGALKTGKIDMVISGMSPTPERL KEVAFSQPYMNVQQRVIVRKEDKDKFHSTKDFEGVRAGAQKQTTQEELIKTELTGAVPTS LQKIPDLIMNLKNNKLDAVVMEEPVGEAYVSQNEDLAFADVTFEKGSKDTAVAFPKDAPV LTEKVNASIKQINDQKLMDGYKKEANQLMFQKDQSFLQKYGKFYLNGAGYTIFLAFIGVL FGAILGALLALMKLANSKILRGIAIAYIEYVRGTPLLVQIFIVYFGTGVLGLDLSKVAAG CIALSLNSGAYVAEIIRAGIQAVNKGQLEAARSLGMNQNQAMRYIIFPQAIKNILPALGN EFVTVIKESSVVSVIGVSELIFQAGNVQGASFKPFLPYLIVSLIYFVLTFTISRLLGVAE RRMSTSD >gi|307679012|gb|GL456785.1| GENE 45 53199 - 53318 58 39 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315149655|gb|EFT93671.1| ## NR: gi|315149655|gb|EFT93671.1| alcohol dehydrogenase [Enterococcus faecalis TX0012] # 1 39 1 39 407 67 79.0 5e-10 MYKNLLCYDVVYHIIEYVKGKVVELKKYNFFKKIFKSQK >gi|307679012|gb|GL456785.1| GENE 46 53333 - 54421 1257 362 aa, chain + ## HITS:1 COG:lin1848 KEGG:ns NR:ns ## COG: lin1848 COG0371 # Protein_GI_number: 16800915 # Func_class: C Energy production and conversion # Function: Glycerol dehydrogenase and related enzymes # Organism: Listeria innocua # 1 362 2 364 368 399 53.0 1e-111 MEQSLIVRGTPQEYLCEIGSWELLEGQLLCRNIHRVFILHGTESWQAAKPYFPTFQKVTA VFENYGGVCTDQRVQELEAQVLDNHLEAIVAVGGGKVADLGKALAHKMALPVIILPTLAA TCAPCTPLSVMYREDGAMERYDVFPQANALVLVEPRVLLHSPRSLMVAGIGDTLAKWYEA DAIISQLDVQVLPIQVSHFAAEKCRDILLNESINALKAMEEQQLNQSFIDVIETNLIIGG MVGGFGDDYGRTAGAHSIHDALTLLPASHRQLHGNKVAYGVFVQLAIEEKWQEIAELIPF YHQLGLPISLKEMEMDLTEAEYQEVAERACIEGETIHYMKQKITPEIVKKAMQDLEKYTA TK >gi|307679012|gb|GL456785.1| GENE 47 54580 - 55725 1244 381 aa, chain + ## HITS:1 COG:SP2058 KEGG:ns NR:ns ## COG: SP2058 COG0343 # Protein_GI_number: 15901878 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Queuine/archaeosine tRNA-ribosyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 376 1 376 380 682 83.0 0 MTEPAIRYRLIKKDKHTGARLGELITPHGTFPTPMFMPVGTLATVKTMSPEELKEMGAGV ILSNTYHLWLRPGEDLVEEAGGLHKFMNWDQPILTDSGGFQVFSLSDMRKIEEEGVHFRN HLNGSKMFLSPEKAINIQNKLGSDIMMSFDECPPFDESYEYVKRSIERTSRWAERGLKAH ANPDRQGLFGIVQGAGFEDLRRQSAKDLVSMDFPGYSIGGLSVGESKEEMNRVLDFTTPL IPENKPRYLMGVGAPDSLIDGVIRGIDMFDCVLPTRIARNGTCMTSQGRLVVKNAQYARD FRPLDEKCDCYVCRNYTRAYIRHLIKCDETFGIRLTSYHNLYFLLDLMKNVRQAIMDDNL LEFRQAFFEEYGFNKANAKSF >gi|307679012|gb|GL456785.1| GENE 48 55807 - 56184 584 125 aa, chain + ## HITS:1 COG:L184708 KEGG:ns NR:ns ## COG: L184708 COG1862 # Protein_GI_number: 15674113 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YajC # Organism: Lactococcus lactis # 4 114 3 106 110 76 52.0 1e-14 MGGGFTMIFTLVLLGGMMFFMTRSQKKQQQERQKQLNAMKTGDSVVTIGGLHGVLSEINE KTVLIDCEGIVLEFDRAAIRTVTPGTAVTNDSAVTSVPVTEVEETVTEEVTEVPETSDPS KEKKD >gi|307679012|gb|GL456785.1| GENE 49 56464 - 56751 294 95 aa, chain + ## HITS:1 COG:no KEGG:EF0899 NR:ns ## KEGG: EF0899 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 95 1 95 95 159 98.0 4e-38 MTKEKLSWLQQKMLNKSIKKKCQNFRELGYSSINEEDLLTYLLTYRWKKQTHLSVKDCRK DIQKVKPNEFFDYQQLLAQTSKNPLRDWHDIEDLF >gi|307679012|gb|GL456785.1| GENE 50 56909 - 59506 3078 865 aa, chain + ## HITS:1 COG:SA0143_2 KEGG:ns NR:ns ## COG: SA0143_2 COG1454 # Protein_GI_number: 15925852 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Staphylococcus aureus N315 # 457 863 1 407 411 650 76.0 0 MVKTVKKEKTETVDVSSMIDELATKANVALKAMEDFTQEQVDHIVHQMAMAALDQHMPLA KMAVEETGRGIYEDKAIKNMYASEYIWNNIKHDKTVGVINKDEQTGLMEIAEPVGVVCGV TPTTNPTSTTIFKSLIALKTRNPIVFAFHPSAQKCSAEAARIVRDAAIAAGAPENCIQWI EQPSIDATSALMNHPGIAIVLATGGAGMVKSAYSTGKPALGVGPGNVPAYIEKTAKVKRA VNDLIVSKSFDNGMICASEQAVIVDKEIYASVKAEFEAHNVYFVKPNELQKLEDAVMNEG KYAVNPAIVGNSAEKIAELAGISVPKGTKILVAELEGAGPEYPLSREKLSPVLAMMKSNN AEHAFELCEAMLNLGGLGHTAVIHTEDEELQVAFGLRMKACRILVNTPSAEGGIGNIYNE MIPSLTLGCGSYGKNSVSKNVSAINLINIKTVAKRRNNMQWFKLPPKIFFEKNSLQYLQK MENVERVMLVCDPGMVQFGYADIVRKELQKRKNDVKIEVFSDVEPNPSTNTVYAGTKMMV DFQPDTVIALGGGSAMDAAKGMWMFYEHPDTEFFGAKQKFLDIRKRTYKIAKPEKTQFVC IPTTSGTGSEVTPFAVITDSETHVKYPLADYALTPDVAIVDPQFVMSVPASVTADTGMDV LTHAIESYVSVMASDYTRGLSLQAIKLVFDHLENSVKRPDMESREKMHNASTMAGMAFAN AFLGICHSIAHKIGGEYGIPHGRTNAILLPHIIRYNAKDPSKHAMFPKYDYFRADTDYAD IAKFLGLKGNTTAELVEALATAVADLGKSVGIDMNLKAQGVSQETLDTTVDRMAELAYED QCTTANPKEPLISELKQIILDAYVG >gi|307679012|gb|GL456785.1| GENE 51 59551 - 60594 1065 347 aa, chain - ## HITS:1 COG:SA2136 KEGG:ns NR:ns ## COG: SA2136 COG1304 # Protein_GI_number: 15927926 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Staphylococcus aureus N315 # 3 340 9 345 349 318 45.0 1e-86 MNRKDEHLSLAKAFHKEKSNDFDRVRFVHQSFAESAVNEVDISTSFLSFQLPQPFYVNAM TGGSQRAKEINQQLGIIAKETGLLVATGSVSAALKDASLADTYQIMRKENPDGLIFANIG AGLGVEEAKRALDLFQANALQIHVNVPQELVMPEGDRDFTNWLTKIEAIVQAVEVPVIVK EVGFGMSQETLEKLTSIGVQAADVSGQGGTSFTQIENARRKKRELSFLDDWGQSTVISLL ESQNWQKKLTILGSGGVRNSLDIVKGLALGAKSMGVAGTILASLMSKNGLENTLALVQQW QEEVKMLYTLLGKKTTEELTSTALILDPVLVNWCHNRGIDSTVFAKR >gi|307679012|gb|GL456785.1| GENE 52 60578 - 61684 1101 368 aa, chain - ## HITS:1 COG:SA0549 KEGG:ns NR:ns ## COG: SA0549 COG1577 # Protein_GI_number: 15926270 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Staphylococcus aureus N315 # 1 357 1 358 358 320 44.0 4e-87 MIEVTTPGKLFIAGEYAVVEPGHPAIIVAVDQFVTVTVEETTDEGSIQSAQYSSLPIRWT RRNGELVLDIRENPFHYVLAAIHLTEKYAQEQNKELSFYHLKVTSELDSSNGRKYGLGSS GAVTVGTVKALNIFYDLGLENEEIFKLSALAHLAVQGNGSCGDIAASCYGGWIAFSTFDH DWVNQKVATETLTDLLAMDWPELMIFPLKVPKQLRLLIGWTGSPASTSDLVDRVHQSKEE KQAAYEQFLMKSRLCVETMINGFNTGKISVIQKQITKNRQLLAELSSLTGVVIETEALKN LCDLAESYTGAAKSSGAGGGDCGIVIFRQKSGILPLMTAWEKDGITPLPLHVYTYGQKEC KEKHESKR >gi|307679012|gb|GL456785.1| GENE 53 61687 - 62682 1279 331 aa, chain - ## HITS:1 COG:SA0548 KEGG:ns NR:ns ## COG: SA0548 COG3407 # Protein_GI_number: 15926269 # Func_class: I Lipid transport and metabolism # Function: Mevalonate pyrophosphate decarboxylase # Organism: Staphylococcus aureus N315 # 3 325 4 327 327 350 57.0 2e-96 MLSGKARAHTNIALIKYWGKANEEYILPMNSSLSLTLDAFYTETTVTFDAHYSEDVFILD GILQNEKQTKKVKEFLNLVRQQADCTWFAKVESQNFVPTAAGLASSASGLAALAGACNVA LGLNLSAKDLSRLARRGSGSACRSIFGGFAQWNKGHSDETSFAENIPANNWENELAMLFI LINDGEKDVSSRDGMKRTVETSSFYQGWLDNVEKDLSQVHEAIKTKDFPRLGEIIEANGL RMHGTTLGAVPPFTYWSPGSLQAMALVRQARAKGIPCYFTMDAGPNVKVLVEKKNLEALK TFLSEHFSKEQLVPAFAGPGIELFETKGMDK >gi|307679012|gb|GL456785.1| GENE 54 62682 - 63626 876 314 aa, chain - ## HITS:1 COG:lin0010 KEGG:ns NR:ns ## COG: lin0010 COG1577 # Protein_GI_number: 16799089 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Listeria innocua # 9 307 4 301 322 213 42.0 5e-55 MNIKKQGLGQATGKIILMGEHAVVYGEPAIAFPFQATEITAVFTPAKTMQIDCAYFTGLL EDVPQELANIKEVVQQTLHFLKEDTFKGTLTLTSTIPAERGMGSSAATAVAIVRSLFDYF DYAYTYQELFELVSLSEKIAHGNPSGIDAAATSGADPLFFTRGFPPTHFSMNLSNAYLVV ADTGIKGQTREAVKDIAQLAQNNPTAIAETMKQLGSFTKEAKQAILQDDKQKLGQLMTLA QEQLQQLTVSNDMLDRLVALSLEHGALGAKLTGGGRGGCMIALTDNKKTAQTIAQTLEEN GAVATWIQSLEVKK >gi|307679012|gb|GL456785.1| GENE 55 63896 - 64531 376 211 aa, chain - ## HITS:1 COG:BS_yisX KEGG:ns NR:ns ## COG: BS_yisX COG1357 # Protein_GI_number: 16078153 # Func_class: S Function unknown # Function: Uncharacterized low-complexity proteins # Organism: Bacillus subtilis # 9 210 9 211 212 113 29.0 2e-25 MKITYPLPPNLPEQLPLLTNCQLEDEAILENHLYQQIDLPNQEVRNLVFRDAVFDHLSLA NGQFASFDCSNVRFEACDFSNVEWLSGSFHRVTFLRCNLTGTNFADSYLKDCLFEDCKAD YASFRFANFNLVHFNQTRLVESEFFEVTWKKLLLEACDLTESNWLNTSLKGLDFSQNTFE RLTFSPNYLSGLKVTPEQAIYLASALGLVIT >gi|307679012|gb|GL456785.1| GENE 56 64528 - 65601 1129 357 aa, chain - ## HITS:1 COG:Cj0557c KEGG:ns NR:ns ## COG: Cj0557c COG1289 # Protein_GI_number: 15791918 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Campylobacter jejuni # 20 329 28 337 361 113 28.0 5e-25 MKNSTFLKDLFAIDKANDELFRLVGVAICMAIPLLIGYFSNNLLIGTFGSMGIYTFIYYQ PLPLPQLLRRLNIVGFFIVLGNSLGMLSHHVPWLIPITIAIVAFLARLLFRLYGIEKPGA LLVIMSTAMGTSNNFPLHKIPIMASFVLLGVVTGIIMGIVLHFIDKRPYVFQKRMSLQER LYIDPASLLDALHYAAILFLAAYLSQSLHLVNTYWMTFTCAAILQGENLHSVMQRNVQRI LGTSLGLLLSAILLMIPFTPLQTIGIISILYAAFEGFINRNYAIASFFITPMSLLLSNLA RQQVISNLLNYRLVGIVLGSLLGFAGAYVFTTALRFYNRAYSIDETFENQQEERGVL >gi|307679012|gb|GL456785.1| GENE 57 65845 - 67515 2057 556 aa, chain + ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 22 556 22 559 559 442 44.0 1e-124 MKLKKSLTFGVITLFSVTTLAACGGGGTSDSSSASGGGKASGEQVLRVTEQQEMPTADLS LATDRISFIALNNVYEGIYRLDKDNKVQPAGAAEKAEVSEDGLTYKIKLNKDAKWSDGKP VTANDYVYGWQRTVDPATASEYAYLYASVKNGDAIAKGEKDKSELGIKAVSDTELEITLE KATPYFDYLLAFPSFFPQRQDIVEKYGKNYASNSESAVYNGPFVLDGFDGPGTDTKWSFK KNDQYWDKDTVKLDSVDVNVVKESPTALNLFQDGQTDDVVLSGELAQQMANDPAFVSQKE ASTQYMELNQRDEKSPFRNANLRKAISYSIDRKALVESILGDGSIEPNGLVPADMAKDPS GGKDFAKEAGSQIEYDTKKAKEYWEKAKKELGISTLTMDILSSDADSSKKTVEFVQGSIQ DALDGVKVTVSPVPFSVRLDRSNKGDFDAVIGGWSADYADPSSFLDLFASDNSYNRGRYN NPEFDKFVKAASSADATDPEKRWDDMLNAEKTIMGDMGVVPLFQKSEAHLRAEKVKDVAV HPAGATYDYKWAYISE >gi|307679012|gb|GL456785.1| GENE 58 67594 - 67944 315 116 aa, chain - ## HITS:1 COG:no KEGG:EF0908 NR:ns ## KEGG: EF0908 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 116 1 116 116 169 99.0 4e-41 MKTFKWPIITAVISSIGIFLYLLISKEPITTSSLSDTFFIVSLFFLIIGIALWIMSSGFF DNFQRSMKNAFRFKKKNEPKEFIPLSVIGDAHRSFWLKTGGILLILSLGFLLFYLV >gi|307679012|gb|GL456785.1| GENE 59 68035 - 68976 244 313 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 [Haemophilus parasuis 29755] # 9 303 6 310 320 98 25 2e-19 MNSFGKYFLKRIFFMIITLWLIATITFFLMQLLPGTPYTNQEKLSPETIAMLNKQSGLDK PVIVQYGIYLKNLVTGDFGISFQFKNQPVAKLLAGRIGPSLQLGGQAIIFGTLVGILLGI IAAMRQNTWVDTLATLLAILGRSIPNFVFAVLLQYIFAMKLRILPIAMWNGFAYTILPTI ALAMSPMADSARFIRTEMVEVLHSDYVELAKAKGLSRWQVAFRHGLRNSLIPLITLLGPL AVGLMTGSLVVENIFAIPGIGEQFVKSIMTNDYPTIMAVTILYSTMLVVVILIVDLLYGL IDPRIRVSGGAKG >gi|307679012|gb|GL456785.1| GENE 60 68976 - 70028 1145 350 aa, chain + ## HITS:1 COG:lin2298 KEGG:ns NR:ns ## COG: lin2298 COG1173 # Protein_GI_number: 16801362 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Listeria innocua # 16 350 6 344 344 353 55.0 3e-97 METVNKNNLPQAIKDIPADEFQPLNTSTLKERERIATPSLSFLQDSWRRLKKNKAAVISM SFLAVIIFISIITIWVSPHNPTKQNVSYINLPPRIPGLESVNGLNGKTTVAGQLVDKYAQ ANVPDNVNFYLGTDGLGRDVLSRLFMGTRISLLIAFIAAILDITIGVTYGLISGLVGGRV DTVMQRILEVLSGIPNLVVMILMLTVFDPGIVSIVLAMVITNWISMARIVRAQTMKLKDQ EFVMAAETLGESRWKIAIKHILPNISSVIIVQMMFSIPSAIFFEAFLSFIGLGLRPPTAS LGTLLNEGYKTFRFLPYLMWIPAATLSVIMICFNLLADGLRDAFDPKMKE >gi|307679012|gb|GL456785.1| GENE 61 70044 - 71000 1256 318 aa, chain + ## HITS:1 COG:lin2297 KEGG:ns NR:ns ## COG: lin2297 COG0444 # Protein_GI_number: 16801361 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component # Organism: Listeria innocua # 1 266 1 267 358 337 63.0 2e-92 MEKVLEVKDLRISFDTFAGKVNAIRGVSFDLYKGETLAIVGESGSGKSVTTRSIMRLLSS NANIDNGEILFKGQDIVHKTEKQMQAIRGKEIAMIFQDPMTSLDPTMPIGKQVAESLIKH NKVSKKEGLAQALELLKLVGIPNAEKRLKNYPHQFSGGQRQRIGIARALAVNPRFIICDE PISALDVSIQAQVVNLLQDLQKEQGLTYLFIAHDLSMVKHISDRIGVMHSGKLLEMGTSD DVYNFGVHPYTESLLSAIPLPDPDYERTRKRIVYQPAAADGKDRELREILNGHYVYCAED EVAMYREKIEEKKRKAGL >gi|307679012|gb|GL456785.1| GENE 62 71041 - 72111 839 356 aa, chain + ## HITS:1 COG:DR0666 KEGG:ns NR:ns ## COG: DR0666 COG0675 # Protein_GI_number: 15805693 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Deinococcus radiodurans # 5 314 5 316 408 147 34.0 3e-35 MKALKAYKYRLYPTSKQEEFIQKTFSCVRLVYNLMLQDRIDIYKEMRKNPQQTFKMPTPA KYKKQYPVLREVDSLALANAQVYLDRAFKNFYREKGMGFPKKKKKETVHSYTTNNQHGTV KILDNRYLKVPKLKSLIKMKVHRQPLGEIKSVTISMSASHNYYVSILCEAPIETKTKQQK MVGICSSREKFALISNGESFEKSYCSKHLKQKLRQEERKLNKRKMIALEKGVDLSQAKNY QKQKIKVAKIREKIANQRTDILNKITTELVSSYDVICIEKAHHSNERPPKHDRSELAWSL FLAKLLYKAQWYGKELICIESEEIETELSFSESTENSEYLRSQKILERGLSKRETL >gi|307679012|gb|GL456785.1| GENE 63 72532 - 73032 426 166 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 [Vibrio campbellii AND4] # 2 163 1 164 166 168 50 1e-40 MVNDGIRARELRLIGQDGEQLGVKTKAEALQIAESANLDLVLVAPGAKPPVARIMDYGKF RFEQQKKEREARKKQKVINVKEVRLSPTIDVNDFNTKLRNARKFLEKGDKVKASIRFKGR AITHKEIGQKVLDRLAEETADIATVEQKAKMDGRSMFLTLAPKNDK >gi|307679012|gb|GL456785.1| GENE 64 73146 - 73346 340 66 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375499|ref|NP_814653.1| 50S ribosomal protein L35 [Enterococcus faecalis V583] # 1 66 1 66 66 135 100 1e-30 MPKQKTHRGLAKRVKRTGGGGLKRGRAFTSHRFHGKTKKQRRQLRKASMVAKGDYKRIRQ QLARMK >gi|307679012|gb|GL456785.1| GENE 65 73407 - 73766 595 119 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375500|ref|NP_814654.1| 50S ribosomal protein L20 [Enterococcus faecalis V583] # 1 119 1 119 119 233 100 4e-60 MARVKGGTVTRKRRKKVLKLAKGYYGSKHTLFKSAKEQVMNSYYYAFRDRRQKKRDFRKL WIARINAAARMNGLSYSKLMHGLKLAEIDINRKMLADLAVNDAAAFTALAEQAKDALSK >gi|307679012|gb|GL456785.1| GENE 66 73813 - 74163 609 116 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238856926|ref|ZP_04647185.1| 30S ribosomal protein S8 [Enterococcus faecalis TUSoD Ef11] # 1 116 1 116 116 239 98 9e-62 MTFQETISAYIQERYQITPDFPFKKHPDYLVFRHPRNAKWFALIMPLDAQLLGATENKQL TILTVKFAPELIALLKNQPGYFPAYHMNKEHWLSLSEEIPLSQVFSFIDESYQRSY >gi|307679012|gb|GL456785.1| GENE 67 74261 - 74620 544 119 aa, chain + ## HITS:1 COG:L101688 KEGG:ns NR:ns ## COG: L101688 COG3759 # Protein_GI_number: 15673453 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 1 116 1 116 119 123 69.0 1e-28 MTLISTILVTLVAVEFFYIMYLETIVPTSETTSRVFKMDKQELQRKSVTTLFKNQGIYNG LIGAGLIYSVYFAQATMEMTKFLLIYIILVAAYGSFRSDKKIILTQGGLAIVALISLLV >gi|307679012|gb|GL456785.1| GENE 68 74832 - 75179 399 115 aa, chain + ## HITS:1 COG:lin1092 KEGG:ns NR:ns ## COG: lin1092 COG0454 # Protein_GI_number: 16800161 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Listeria innocua # 13 113 43 142 150 87 43.0 8e-18 MSQADIDKIEVVLPDYFQQVQLSMWLNEEQKCVGFSGTNQQTLEMLFIDPVYFRKGYGGE IIKKLIEQESIIFVDANKQNEGAVKFYQSQGFQVIGESKEDPQGNPFPILHMKRI >gi|307679012|gb|GL456785.1| GENE 69 75197 - 75712 193 171 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148360238|ref|YP_001251445.1| nucleotidyltransferase PLUS glutamate rich protein GrpB PLUS ribosomal protein alanine acetyltransferase [Legionella pneumophila str. Corby] # 3 165 175 342 601 79 31 2e-13 MRVIVTEYQPAWVEQFEEEAQALKQILKENCLKVEHIGSTSVPNLAAKPIIDFLVIVEEI EKVDLLQGEFERIGYEYMGEFGLSGRRYLRKGPIKRTHHVHIYQFDNTQEILRHLAFRNY LRENPAIATTYGTLKKQLAQAHPDSIDKYMDGKDAFIKKIEKAALKKYWEK >gi|307679012|gb|GL456785.1| GENE 70 75728 - 76903 951 391 aa, chain - ## HITS:1 COG:PA2563 KEGG:ns NR:ns ## COG: PA2563 COG0659 # Protein_GI_number: 15597759 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfate permease and related transporters (MFS superfamily) # Organism: Pseudomonas aeruginosa # 7 380 6 382 495 343 49.0 5e-94 MLFSFKKSEWLGNERNDLFAGLVSSVAILPEVIGFAIIAGVHPLSAVFASAVTLLVITFT GGRPAMVSASAGSMALVLAGLIQAHGLSYMLAATILTGFLQFILGYLGIHKLMRFIPKTV MYGFVNALAILIFMAQVQQLPHQTLWSYGMIICSILLIYLLPKFITIVPPALIVILFMTI LSYFLKGHLQTVGDLGEMSQFHPAIRWPNVPVNLETLWIILPSSVALAMVGLIESLLTIP IVDKMTTSQSDSQREVKAQGFANIITGFFGGQAGCAMIGQAVINVKSGGRKRLSTLISGI TLLLFIFVFKSVMVAIPTAALIGIMMTVAVDTFDWESLQLFRTFEITEIVILLVTVGVIV YTHNLAIGIILGVLLSGLLYHFFKKEPKKSC >gi|307679012|gb|GL456785.1| GENE 71 76997 - 78025 1083 342 aa, chain - ## HITS:1 COG:L178384 KEGG:ns NR:ns ## COG: L178384 COG2855 # Protein_GI_number: 15672357 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 15 331 3 320 331 281 56.0 1e-75 MKNSENDYIQSLFQILPGLLTAFLVACLSKFLAIWLPSLGAATIAILLGIFLGNTFVRGA NLNRGTKVAESKLLEFSVVLLGTTVTFQTIAQIGLQGVAFILIQMSLTIIFAYLIGKKLA FSDNMSLLMAGGNAVCGSSAIASIAPAIQADEEEKGQIITLVNLLGTVLMLTLPILSGIL YGTNLLARSALIGGTLQSVGQVVASANMVNENAVQLAMLFKIMRIVLLVAVVYLFGRFKQ SKTAESEAELVEVTKKSSALPWYVVGFFIACVFNSLIHFPVVISETAHFFSSWFEITALA AIGLRLDFKKFFQEGKRFLIYGLSVGTVQVVLAILLLALLQF >gi|307679012|gb|GL456785.1| GENE 72 78132 - 78968 668 278 aa, chain + ## HITS:1 COG:L0220 KEGG:ns NR:ns ## COG: L0220 COG0583 # Protein_GI_number: 15672356 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 3 267 1 266 272 191 40.0 2e-48 MPMFKLLKTFQIVYEQMNFSKAATCLYISQPAVSNQIKQLEEELGCSLFLRNGRQDVVPT RQAEVLYNRLLNLADDWQETLTALHQARLPKETCRIAASNTFAVYYLPQLMQHLQTQYAT INFVLEMNNSEEVVEKVEKHQVDFGFIEKPLITKGASREEIIQDQLVLAGDPANQNWLVR EKDSGVFHYTQQYLEESNQSPTLMTVKNNEMIVKMLELGMGQSLLSRKAITEKIPFQTLG EKYWRSFYFLTRGHLKSSLLQEIKQAIYRFYQTEMNKY >gi|307679012|gb|GL456785.1| GENE 73 79033 - 79905 899 290 aa, chain + ## HITS:1 COG:CAC3467 KEGG:ns NR:ns ## COG: CAC3467 COG3865 # Protein_GI_number: 15896706 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 288 1 294 294 171 33.0 2e-42 MPKFSPCLWFDTQAEEAANFYTTIFEKGAILSKTNYVNEEHQPQGTSLMTIEFTLANQTI IGLNGGPEFSFTPASSFFVECKTLSQTETLWKNLTADGQILMPFGEYPFSPLYGWVVDKF GVSWQVSFSGKEQTIVPTFMFANEKYGEAAKALSEWLAIFGPGEIIEKVEYEDGNIAQAL FTLQEQPFRVMDARDKHDFDFTMAFSIYIDCENQEEIDRLWQQVTAKGKEWPCGWMEDQF GVSWQTGNPELKRYLSDSNPARANEVTKKLYQMKKIDLNQLKEVYDKYNH >gi|307679012|gb|GL456785.1| GENE 74 80180 - 80404 290 74 aa, chain + ## HITS:1 COG:no KEGG:EF0925 NR:ns ## KEGG: EF0925 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 74 1 74 74 96 100.0 3e-19 MIELIVLLTVFTYGTNFVLYLILKNKKSMPIVEKASIVLGINMSVLLLDGIFAFVGKFIM LSEWELLAPIFEIV >gi|307679012|gb|GL456785.1| GENE 75 80493 - 81167 776 224 aa, chain + ## HITS:1 COG:CAC0224 KEGG:ns NR:ns ## COG: CAC0224 COG0745 # Protein_GI_number: 15893516 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 1 223 1 222 223 246 52.0 2e-65 MAKIMIVEDETTIRELISEELQKWQFETIGTTDFNDVLDDFQEENPQLVLMDINLPVYDG YYWCQKIREVSKVPIIFISSRSTNMDMIMAMNMGADDFVTKPFQIDVLIAKINALLRRSY NYSDTDSEVLSHNGITLNVDNGRMEIKGEMIDLSKNEYRLLYLLMKKHGKILTREKLLRA LWDDERFVDDNTLTVNINRLRKKIEQAGIAGYIETKVGVGYMVP >gi|307679012|gb|GL456785.1| GENE 76 81181 - 82206 964 341 aa, chain + ## HITS:1 COG:CAC0225 KEGG:ns NR:ns ## COG: CAC0225 COG0642 # Protein_GI_number: 15893517 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 1 340 1 336 339 201 33.0 2e-51 MTILKYLKDRWLLLIGWLFFLFLTCFILWLAPNVRLDWTVVGYIFLLQSVFLSLFLTIDY YLKRKWWLSLATEKEPPSLQEYLNTAEKEEELLVQTYINGLLQEHQQTMQQAINNQQDQK DYIDSWVHEIKVPLAAITLLVQSVEDDIPEKKYYLLENELGKIDEYVEQVLYYARLDSFS RDYLLQEYSLKEIVQSVVRTQANYFIQKRLQFSIEGEDEAVLTDRKWVIFIFRQLLSNAV KYTPEGGTITVLISKNKQGVYLSLKDSGIGIPTQDQRRIFDKGFTGENGRKSEQHSTGLG LYLAHSLAKKLGHDLTVESTEGQGTTMTLFFPSLSYYNEVK >gi|307679012|gb|GL456785.1| GENE 77 82354 - 83217 1078 287 aa, chain + ## HITS:1 COG:SPy2205 KEGG:ns NR:ns ## COG: SPy2205 COG4975 # Protein_GI_number: 15675938 # Func_class: G Carbohydrate transport and metabolism # Function: Putative glucose uptake permease # Organism: Streptococcus pyogenes M1 GAS # 10 287 1 277 277 233 49.0 3e-61 MSLLIALVPMIAWGSIGLVSGKIGGSANQQTLGMTIGALLFSIVVFFVIQPTLTTATLIV GFISGLFWSLGQNQQFHSMKYMGVSVGLPISTGMQLVVNTVAGAVFFHEWTKTKDFVVGF IALAFLVFGVYLTARQDDDSQPKTSNSMLDFNKGIRALIFSTVGYGVYTIIINATGLDPW GIILPQSIGMLVGASFFAFKKVKVDRFVWMNMTTGLLWGLGNICMLLTMREIGLAISFSL SQMGIIISTLGGIFLLGERKSKKEMFYVIFGCIFVILGGILLGYMKA >gi|307679012|gb|GL456785.1| GENE 78 83258 - 84649 1606 463 aa, chain + ## HITS:1 COG:lin0648 KEGG:ns NR:ns ## COG: lin0648 COG0531 # Protein_GI_number: 16799723 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Listeria innocua # 2 455 3 458 463 422 50.0 1e-118 MSIFRKKEITVPVNDSGGMKKNLKTMDLIFLGIGAVVGTGIFVVTGVAAERYAGPGLVLS FLVAAAAIILSGLCYAEFASRIPVIGGPYAYMYVVFGEIVAWMTGWMIICEFFLAVSSVA SGWSGYVHGFLDSLGFSLPQALSGAYNPTNGTYIDLIAMLVVVAVTFWVSLEAKTALRLN NLMVFVKFGIILLFVLVGIFYVKPTNWQPFIPYGFSGVFSGAALVFFAFLGFDAVSMAAE EVKNPKKDIPKGIIGSIIISTLLYIVVTLVLTGIVPFTDLGVKDPVAFAMRFINHGAIAT IISVGAILTLLTVTIAMMYSLARVIYAISKDGLLPQFMSKIDEKRHTPKNATYVAGFLAM VFAGIVPMEMLAELTNIVTLFYLMFLALGIIKLRTMKGEPQAGEFKVPLVPVLPLISIVV CAALMFQLSLATWQVFGIAVVIGLAIYFFYGRHHSIVRFETKE >gi|307679012|gb|GL456785.1| GENE 79 84837 - 86846 2397 669 aa, chain + ## HITS:1 COG:lin0216_1 KEGG:ns NR:ns ## COG: lin0216_1 COG0143 # Protein_GI_number: 16799293 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA synthetase # Organism: Listeria innocua # 3 544 4 547 549 808 71.0 0 MSQKETFYITTPIYYPSGKLHIGNSYTTIACDAMARYKRLMGFDVFYLTGVDEHGQKIEK KAAELNVTPKEYVDKMAADVQKLWKTLDISYDKFIRTTDDYHMAAVQQIFDRLVEQGDIY LGEYEGWYSVSDEEFFTETQLAEVYRDDEGNVIGGKAPSGHEVELVKEESYFFRMSKYAD RLVQYYEEHPEFIQPESRKNEMLNNFIKPGLEDLAVSRTTFSWGIPLKNDPKHVVYVWID ALSNYITALGYGSEDDSLFQKYWPANVQMVGKEIVRFHTIYWPIMLMALDLPLPKKVFGH GWLLMKDGKMSKSKGNVVYPEMLVERYGLDALRYYLLRAIPFGSDGVFTPEDFVSRLNYD LANDLGNLLNRTIAMINKYCDGKVPAYASKVTPFDSELSTTAANVIGKYHEAMEKMEFNT AIAEIWTLVSRANKYIDETAPWVLAKEEEKRNELESVMIHLAESLRIVAILLQPVMTETP GKIFEQLGLDPETMNMENIHFGEFPTDVTVTSKGTPIFPRLEIETEVTYIQKKMSQSESA TEEDIKWNPEETTLVSTKEKQIKYDDFDKVELKVAEVIDCKKVKGADKLLQFRLDAGDEN HRQILSGIAEFYPDPAALIGKKVVIVANLKPRKMRGQISQGMILSAESPEGKLQIVEAPK EMPNGAGIA >gi|307679012|gb|GL456785.1| GENE 80 86946 - 87167 104 73 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229548867|ref|ZP_04437592.1| ## NR: gi|229548867|ref|ZP_04437592.1| hypothetical protein HMPREF0345_1079 [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis X98] conserved hypothetical protein [Enterococcus faecalis PC1.1] conserved domain protein [Enterococcus faecalis TX4248] conserved domain protein [Enterococcus faecalis TX0102] hypothetical protein HMPREF0345_1079 [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis X98] conserved hypothetical protein [Enterococcus faecalis PC1.1] conserved domain protein [Enterococcus faecalis TX4248] conserved domain protein [Enterococcus faecalis TX0102] conserved domain protein [Enterococcus faecalis TX0017] conserved domain protein [Enterococcus faecalis TX0027] conserved domain protein [Enterococcus faecalis TX0031] conserved domain protein [Enterococcus faecalis TX0043] conserved domain protein [Enterococcus faecalis TX0312] hypothetical protein EF62_1304 [Enterococcus faecalis 62] hypothetical protein HMPREF9520_02052 [Enterococcus faecalis TX1467] # 1 73 1 73 73 128 100.0 1e-28 MAYHTYEFLKRRKNDPKWRKAYTSARNKRIIGTLVTINIIIWGFVLWKKIESGDIEVNNI IDVLKSKINEFLN >gi|307679012|gb|GL456785.1| GENE 81 87226 - 87831 477 201 aa, chain - ## HITS:1 COG:no KEGG:EF0932 NR:ns ## KEGG: EF0932 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 201 1 201 201 305 98.0 9e-82 MKQSPDLENFLKTSIQKNVTIERKQQNQTIWHWLLLILFGLLTFGSLTQQLLLIGLFTLI AAIVKGPLMLVWGTIYSALVALFPPFALVLSLLFFIINLGTVMKSWRITLTSAYFYLIPL GFSLLKTTDWVSTPYFLTGLALLSILGLHFILEWLYKNNSLGRLLTWQIISVPFSLLLII LPSRLTKGRFGKKRIPKKVKL >gi|307679012|gb|GL456785.1| GENE 82 87952 - 90150 2418 732 aa, chain - ## HITS:1 COG:BS_yvgS KEGG:ns NR:ns ## COG: BS_yvgS COG3973 # Protein_GI_number: 16080398 # Func_class: R General function prediction only # Function: Superfamily I DNA and RNA helicases # Organism: Bacillus subtilis # 8 726 11 763 774 263 28.0 1e-69 MTDEKIYEQQHLTTVYHELQAAKKVYEEQLANTMKDGKHMLEEFGRDSKLNFDSYADNLE TFAMLEMKNREIDQWNLKNEATAKNLDKVKRLLQVPYFGKIGVTFEDSPEEPENFYIGVN DFTSLEEETRIHDWRSPIASLFYDNVLGKTAYTAHQQTIPVQLDLKRQLIIEKDQLINYF DTTIAIQDDVLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAI MQRIAYLLYQHRVEITADNILLLSPNSTFIDYISQVLPNLGERNPLNLTLLQFLRFTTKE AWPMEEETDYFERITRSEATEQEHVIRSKEFATFLLSNPEKAVVQPHFFRPLTFKKQTLF TSETIFKLYQETPADLSIRQRISATKEKLTSLWTRYLLKQAHSKKMLDQFQDLTEAEQVR YFGTVITEDNEKHLADFALKRLKKKYRSITAAIKNDAWLDQWAFFETFYSLFTEKSYQKE TAVFTADEIVALILVKHAFIENLANQQMAFILVDEVQDYTEAQLLLLLTLFPKASFTLAG DENQAIFNTAIEFSEAHDLLVNETSRSVGTYQLLNSYRSSKEITRLFQTLGTQPEQLTIV PIRHDGEKPTFIPCDSASDYLKAIVTSIATFDPKESTAIITKTFAEKEQLTKELSASLSL EEHPSLQVLSIDMAKGLEFDNVILHNPNVNRYSDNKRDKKILYTAISRGMKRVVLPYTGT LSEWFTPYLAAQ >gi|307679012|gb|GL456785.1| GENE 83 90309 - 91079 993 256 aa, chain + ## HITS:1 COG:SP1991 KEGG:ns NR:ns ## COG: SP1991 COG0084 # Protein_GI_number: 15901814 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Streptococcus pneumoniae TIGR4 # 1 255 1 255 257 319 63.0 3e-87 MIFDTHTHLNAEQFNDDIPETIAHAQKLGVTEMAVVGFDEPTIEKSLLLSQEYANIYSII GWHPTEAGSYTPEVERRLQEQLTLPKIVALGEIGLDYYWMEDPKEVQEKVFRRQIAIARE MNLPFSVHTREALEDTYRILKDEKISDIGGIMHSFSGDAEWMKKFLDLGLHISFSGVVTF KKALDVQEAAMAVPLERMLVETDAPYLAPVPYRGKRNEPGYTRYVVEKIAELRQLTFEEV AEQTRVNAHRLFRIDK >gi|307679012|gb|GL456785.1| GENE 84 91088 - 91660 850 190 aa, chain + ## HITS:1 COG:BS_yabF KEGG:ns NR:ns ## COG: BS_yabF COG1658 # Protein_GI_number: 16077109 # Func_class: L Replication, recombination and repair # Function: Small primase-like proteins (Toprim domain) # Organism: Bacillus subtilis # 1 189 1 186 186 171 53.0 1e-42 MKVAEIIVVEGKDDTRRIQEVVEADTIETIGSAINDEILTQIEHAQETRGVIIFTDPDYS GEKIRKTIMEVVPDAKHAFLSRKVAVPKKNGGSLGVEHASDEAIIEALKKVVTPVQADED YQEIPRQTLVEYGLIAGANAKKYRELLGDDLRIGYTNSKQLVKRLSMFRITEAELKESMT RILKELANEE >gi|307679012|gb|GL456785.1| GENE 85 91679 - 92566 986 295 aa, chain + ## HITS:1 COG:SPy0262 KEGG:ns NR:ns ## COG: SPy0262 COG0030 # Protein_GI_number: 15674442 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Dimethyladenosine transferase (rRNA methylation) # Organism: Streptococcus pyogenes M1 GAS # 7 291 3 287 290 349 63.0 3e-96 MTDYKEIATPSRTKEILKKYGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPG IGALTEQLAMNAAQVVAFEIDDRLIPVLADTLSRYDNVTVVHQDVLKADLVETTNQVFQE KYPIKVVANLPYYITTPIMMHFLESSLDVAEMVVMMQKEVADRIAAKPGTKAYGSLSIAV QYFMEASVAFIVPKTVFVPQPNVDSAIIKLTRRATPAVTVTNEKEFFKLTKASFQLRRKT LWNNLTHFYGKDEQTVAWLKESLAEAEIDPSRRGETLSLEEFARLSNALEKNKPV >gi|307679012|gb|GL456785.1| GENE 86 92694 - 93311 734 205 aa, chain + ## HITS:1 COG:no KEGG:EF0937 NR:ns ## KEGG: EF0937 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 205 1 205 205 329 100.0 5e-89 MKTNSVKRLTISALLIAMGIIIPMVMPRITIGPASFTLASHVPVFIAMFISPVVAIAVSL GTGFGFFLSATPIIALRALSHLIFAVIGAVILQKHPEILINKEGKFTLLNGKLQLFNVGI GVIHSAAELVVVSVFYTMGNLPGTYYTAGFMYSIFLLMGVGGLIHSLVDFSIAYFLASTL SKHVDIPTFTEAKQPKVIKKKVKLA >gi|307679012|gb|GL456785.1| GENE 87 93361 - 94464 1603 367 aa, chain - ## HITS:1 COG:SPy1976 KEGG:ns NR:ns ## COG: SPy1976 COG3839 # Protein_GI_number: 15675768 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Streptococcus pyogenes M1 GAS # 1 367 1 377 377 521 68.0 1e-148 MVEMALRNVYKKYDNAEHYSVTDFNLEITDREFIVFVGPSGCGKSTTLRMIAGLEDITEG ELSIGDKVMNDVAPKDRDIAMVFQNYALYPHMTVFDNMAFGLKLRKYDKAEIKKRVENAA DILGLTEYLQRKPAALSGGQRQRVALGRAIVRDAKVFLMDEPLSNLDAKLRVAMRAEIAK LHQRLETTTIYVTHDQTEAMTMADRIVIMKDGFIQQIGSPKEVYNTPKNMFVAGFIGSPA MNFFKVTLNNGVISNQHGLKLAIPEGRNKELVEHGYEGKELIFGIRPEDIHSEQVALTAM KDAVIKSEVVVSELLGAESMLYTKIGDTEFISKVDARDFHHPGEMIDLAFDINKGHFFDP QTEEVIK >gi|307679012|gb|GL456785.1| GENE 88 94650 - 95072 575 140 aa, chain + ## HITS:1 COG:lin2020 KEGG:ns NR:ns ## COG: lin2020 COG1803 # Protein_GI_number: 16801086 # Func_class: G Carbohydrate transport and metabolism # Function: Methylglyoxal synthase # Organism: Listeria innocua # 1 129 1 129 134 204 76.0 4e-53 MKIALIAHDRKKTLMIKLATAYKHILEKHELYATGTTGMKVMEATGLPVHCFKSGPLGGD QQIGAMISEDNIDLVIFLRDPLSAQPHEPDVTALIRLSDVYEIPLATNIGSAEILLRGVE AGFADFREVIHEGDRRPLAF >gi|307679012|gb|GL456785.1| GENE 89 95346 - 95885 609 179 aa, chain + ## HITS:1 COG:no KEGG:EF0940 NR:ns ## KEGG: EF0940 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 179 1 179 179 297 100.0 1e-79 MTKKKFGTKSIALMGVLIAVVVVFSRFFAYETTFLKISFTFIPESLIGMIFGPFWAGIGT AVADVVGMLLFPKAGYFPGFTLNAFLAGAIYGYFYYKKEMTWQRVILATLLVTVLINIIL TPLWLSLMYGVNLANFAWWVPRLIKTVIFFPIQVIATYYLGNKIPFKRLFGKPLSELDQ >gi|307679012|gb|GL456785.1| GENE 90 95937 - 97703 212 588 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 348 572 132 356 398 86 28 1e-15 MQTKKIHFGAFSRFKPYLLRYPKEIIGALILGILSGFSTVLMTYYIGKSVDTMVGKGQVN AAQLIKILGLLAGILLVTVLSQWLIQRLGNRVSYLSTTQLRKDAFAHLNQLPLSYYDQTS HGNIVSRFTNDIDNISMACSAVFNQLFSGMATVVVALLFMIRLSPLLTLVVLISTPIIFI VNWLVAKASQKNFAAQQTIVGEISGFVSEMVGNQKIVKAFQQEQATQETFEALNQTLYEK GQKAQFSSSLTNPLSRFIDHLSYLSIGLVGGLLVLSGNPLVTVGVISSFTIYSSQFSKPF IELSGITNQIQAALAGLERTFDMMDQPVERPDAPNAIVLKEARGRVEFKDVDFSYTPTRP LIENFNLIAEPGETIAIVGRTGAGKSTLVNLLMRFYEVDRGQITVDTHDITQITRDSLRK SFGMVLQDTWLFDSSIRENLTYGNPEASDEEIIEAMKKAHIFDFVMRLPQGLDTEIGSQG VKISEGQRQLMTIARTMISNPPMLILDEATSSVDTLTEQKIQDAFLQMMTGRTSFVIAHR LATIKSAEKILVMDNGQVVEIGTHDELLQKEQGYYRDLYEAQFNQKAQ >gi|307679012|gb|GL456785.1| GENE 91 97693 - 99420 182 575 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 347 555 19 224 305 74 27 3e-12 MFGLLKYAKNYRKQIILGPVFKFLEACFELVLPLFMAHLVDVGIRQNDRQTVIEMALWML VMSLVGLFFVMICQYYASVASQGFGTELRNQLMKKINQLSHKELNSFGTDTLITRITNDI NQLQLALAMFIRLVIRTPFLSIGSVVMAFYIDVQMGFLFLLLLPIFSLILFIIIKVTVPL YQKVQEYLDRLNRQISQNLSGVRVIRAFARKETEQRHVDKASDDLGDIYIRVSNVSALLT PLTTLIMNVGILFLLYFSGLKVSFGSLQQGEVLALINYMNQMMLALIVASNLVVIFTRAA ASANRVNEVLTVESQLTDTTESAKTSPQFGDITFDHVDFRYEPEAGLALENINFTIPKGS ILGITGPTGSGKSTLTQLIPRFYDVSAGNLFINGINVRDWPLFTLRQQVASVPQTAVLFT GTIRENLQWGKPNATDEDCWEALAIAQCKEFVEQLDQGLDTPVNEGGKNFSGGQRQRLTI ARALIRKPHLLILDDSLSALDYQTDLNLRRALQKERAETTVILISQRVSSIATANQILVL DSGKVAGLGTHEELLTSSKEYQEIVASQEEDTHAN >gi|307679012|gb|GL456785.1| GENE 92 99546 - 100313 586 255 aa, chain + ## HITS:1 COG:lin2818 KEGG:ns NR:ns ## COG: lin2818 COG4905 # Protein_GI_number: 16801879 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 4 235 3 249 270 198 37.0 1e-50 MEKMSQVILLFFIYSFIGWLWETVYCSLKAKKFVYRGFLVGPYCPIYGFGVLSVLYFVEP FENNLLVLYVGSAVLVTILEYVTSYGLEKLFHASWWDYHDVPFNLNGRVALPVSLFWGLG CVLIVKVIQPEIAKVVSFLQAIFGNYLALCIVIVMGLDLIYTLLNMQGFKKLITEMGQTL ETNQQEFKQRLNTKMEIATADWQKLKERTKKEHFQNRLNFQQRRFINNYPKLTLKNIKNS KEVRHLLEDLKKKGQ >gi|307679012|gb|GL456785.1| GENE 93 100574 - 101782 1435 402 aa, chain + ## HITS:1 COG:lin0225_2 KEGG:ns NR:ns ## COG: lin0225_2 COG3584 # Protein_GI_number: 16799302 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 310 401 1 89 91 103 56.0 6e-22 MKVKKLIPFLTTMMLINFGLPVAAAAESLDSLQEKEAQAKQSGELISKEINSALDDVNAK YAEIERLKTQISKAEDTLKTSKEEIEKTEKNISRRKEAVGDRMKDIQLNGDQRTWQALLD AENLSDFFNRAYAMTVLQNFEREKIESLTSEKEKLAALQEKVENTQTTLKQNEEKLQVEA SSMNNKVSELKEKMANNEELLAQISTDKQKEQQRLVSEKAAAEAQKKRAAETAKAEAAKK QAAADKQAQADAAAKLEAEAAEESSSQASSSSTSTESSSTESSSSASSSESSSTTESSTG ESSTPGTGSGRVLQMESTAYSWREAGASNLSATGIDLSKESNVVAVDPSVIPLGSLVKVS GYGFAIAGDTGGAIQGNIIDVHFDSVDQCRLWGRRQVTVEIQ >gi|307679012|gb|GL456785.1| GENE 94 101879 - 102442 923 187 aa, chain + ## HITS:1 COG:lin0816 KEGG:ns NR:ns ## COG: lin0816 COG0454 # Protein_GI_number: 16799890 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Listeria innocua # 1 185 1 185 185 172 47.0 3e-43 MIRSATKEDGQAIARLVLVILKDMELPILEEVSEEQMIDLLAEATAYPTYRYGYQRILVY EHAGEVAGIAVGYPAEDEKIIDEPLREVFKKHGLAEDVRLFIEEETLPNEWYLDTISVDE RFRGMGIGSKLLDALPEVAKASGKQALGLNVDFDNPGARKLYASKGFKDVTTMTISGHLY NHMQKEV >gi|307679012|gb|GL456785.1| GENE 95 102488 - 103012 378 174 aa, chain - ## HITS:1 COG:BS_yxjI KEGG:ns NR:ns ## COG: BS_yxjI COG4894 # Protein_GI_number: 16080945 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 159 1 159 162 66 27.0 2e-11 MSEFFIQEQQLGKVTRTIVKDQAGRSLFLLVGRWGTRGDALSLYAMNGEILASIKQVSWT FGTRFELYQRFEKVGTLRKLFNLNADFYYVQGLHWAVVGDIKAHQYSIYQVHKKIMSMDK TMLCTGDYFVLTVANDEDAPLCICIAAVLDYWLYNKKKQKTSDDFGLDFDPLTD >gi|307679012|gb|GL456785.1| GENE 96 103064 - 103933 1013 289 aa, chain - ## HITS:1 COG:BH1746 KEGG:ns NR:ns ## COG: BH1746 COG0561 # Protein_GI_number: 15614309 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Bacillus halodurans # 2 281 1 277 282 171 38.0 1e-42 MIKLIASDMDGTLLDAKMSITNDNTSAIREAERLGIEFMVATGRAYTEAKPALEEAGIDC AMITLNGAQVFDKDGHSLFTAGIEKETVTEVLTILSQHNVYYEISTNKGIFSEHQEKRIE NFAAHIAESMPHLTYKVAIAMASAHLSLLHITYVDRLDDILKDDSIEVLKIIGFSMDGPK VLGPAGMEVEELDDLVVTSSALNNIEINHRLAQKGIAVARVAKERGIPAEQVMTIGDNLN DVSMIQWAGVSFAMGNAELELKEYAKYETATNLENGVGEAILRAIREDL >gi|307679012|gb|GL456785.1| GENE 97 104067 - 104747 791 226 aa, chain + ## HITS:1 COG:BS_ung KEGG:ns NR:ns ## COG: BS_ung COG0692 # Protein_GI_number: 16080848 # Func_class: L Replication, recombination and repair # Function: Uracil DNA glycosylase # Organism: Bacillus subtilis # 1 220 1 220 225 311 69.0 5e-85 MKEIIHNSWQTVLSAEFEKPYYQELREFLKKEYQTQTIYPDMYHLFSALELTPFEEVKVV ILGQDPYHGPNQAHGLSFSVQPGVKVPPSLVNIYKELQADLGYQPVNHGFLESWAKQGVL LLNTVLTVRAGQAYSHRGKGWEQLTDVIIEKLNEREKPVVFILWGRPAQEKIKMIDTTRH VIIKSPHPSPLSAHRGFFGSRPFSQANAALERLGETPIDWQLPETV >gi|307679012|gb|GL456785.1| GENE 98 104903 - 105886 1307 327 aa, chain + ## HITS:1 COG:L107797 KEGG:ns NR:ns ## COG: L107797 COG0280 # Protein_GI_number: 15673641 # Func_class: C Energy production and conversion # Function: Phosphotransacetylase # Organism: Lactococcus lactis # 1 324 1 325 326 421 67.0 1e-117 MELFDSLKFKVVRRNIKIVFPEATDPRILGAAARLKSDELVEPILIGDPTDIANAAMARG INTSNFIIINPNDYEKWDEMVEAFVERRNGKATKEDAEKILKDVNYFGTMLTYMGIADGM VSGAIHSTGDTVRPALQIIKTKPGVSRTSGAFLMIRGRDQERYLFSDCAINVNPTAQELA EIAVDSAKTAELFDIEPKVSLLSFSTKGSAKAPEVTKVAEATKIAQELAPEYAIDGELQF DASYVSSVAQLKAPNSKVAGEATVFVFPDLQSGNIGYKIAQRLGNFEAIGPILQGLNKPV SDLSRGANEEDVYKLSIITAAQTLMND >gi|307679012|gb|GL456785.1| GENE 99 106043 - 106522 662 159 aa, chain + ## HITS:1 COG:BS_ydiB KEGG:ns NR:ns ## COG: BS_ydiB COG0802 # Protein_GI_number: 16077658 # Func_class: R General function prediction only # Function: Predicted ATPase or kinase # Organism: Bacillus subtilis # 7 139 10 140 158 149 54.0 3e-36 MNIVLNNPLETEAIAQIIGQKAQAGDVIVLTGDLGAGKTTMTKGIALGLGISQMIKSPTY TIIREYPQGRLPLYHMDVYRVEEGADELGLDEYFEGDGLSVVEWGSLIEEELPEDYLEII LNKDSQEADKRVLEFRGTGPLAEERIAEILQAWEAREYD >gi|307679012|gb|GL456785.1| GENE 100 106515 - 107036 216 173 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229236145|ref|ZP_04360568.1| acetyltransferase, ribosomal protein N-acetylase [Chitinophaga pinensis DSM 2588] # 4 164 9 170 181 87 28 3e-16 MTEQTFSIREAVPTDADQLLSVMSKIGSETPYLVMDERGMAMSTAELAENLATLYESPNN VLLVALAGEAIIGTASVSASSKKRMEHIGEIGISILKQYWGYGLGSILMEELIRWAHESH VIRRLELTVQDRNQRAIHVYKKLGFETEAIMPRGAKTDQGEFLDVHLMRLLID >gi|307679012|gb|GL456785.1| GENE 101 107206 - 107415 265 69 aa, chain + ## HITS:1 COG:no KEGG:EF0953 NR:ns ## KEGG: EF0953 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 69 1 69 69 105 100.0 6e-22 MAKATKMNVNYRESILDRAYRLELIKKDEYAKHQEKLSLLNEKLSDGEPAQFDAKEETFW KKISQKVIL >gi|307679012|gb|GL456785.1| GENE 102 107489 - 108499 1068 336 aa, chain - ## HITS:1 COG:SPy1293 KEGG:ns NR:ns ## COG: SPy1293 COG1609 # Protein_GI_number: 15675246 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 3 332 2 334 339 282 45.0 5e-76 MAITVKDVAKKAGVATSTVSRVINDHPSISESTKKKVRKVMDDLGYVPNMTARNLGKRIS SAIGVILPPLDSKERLGNPFYLEIMEAINEEARLYDMTTAIATAKSFDVLLENVKRMHLQ KQVDGFILVYSDSKDPVIDYLYENNIPFTLIGQPYQHETEIVYVDNDNQLLGKQATEFLI ENGHKNILFVTNTTHESLYFERYFGYQKAMMMQGLTVLPSVALEKPEDYMAFDDILHQNN ATALVVIDDIFALRTMQLAQIYGYQVPETLSIISFNNSIFSTLTHPYLTSIDIDTSELGR MAMKKLYELIHEELTNGVRLVIPHKLIKRETVIPIH >gi|307679012|gb|GL456785.1| GENE 103 108523 - 109530 325 335 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900011|ref|NP_344615.1| aldose 1-epimerase [Streptococcus pneumoniae TIGR4] # 27 331 29 341 345 129 29 8e-29 MKDNRITVTDIPNTNLKQITLKNDFLEVVLLNYGARLHQLLMPNKNNHWENILLSYDSYQ DVLKDQSFFGATVGPVAGRIRNGHWQNGILEQNSDGHHVHGGSKGWSFQYWTVEPFEKKD IIGVAFHLTDTISGYPGPIEATITYQLEDNHLRMISTGRSKQETLFNPTNHAYFNLSGDG KLDILSHLLSLNCQGMLELDDNKLPTGRILPASELSIRFNELTPIETILQRYPTGLDDVF PLVGSDLRQPQLCLQEPTSGRKMTIATTNQSMVLFSTTGFEAPFSINGQAMHSNYGLAIE PQEYPDIVHHPQWGSILLPANKKQTYQTVYQFNLL >gi|307679012|gb|GL456785.1| GENE 104 109520 - 110188 689 222 aa, chain - ## HITS:1 COG:L0001 KEGG:ns NR:ns ## COG: L0001 COG0637 # Protein_GI_number: 15672411 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Lactococcus lactis # 1 221 1 220 221 275 64.0 4e-74 MFKGVLFDLDGVITDTAEFHYHAWKKLGNEIGISIDRVFNEQLKGVSREDSLQLLLKYGK KEGTFSSEEFAQLAQRKNDYYLEMIQAITPEDVYPGILSLLTELREANIKIALASASKNG PFLLEKMQLTPLFDAIANPADVQAGKPAPDIFILAAKEIDLTPAECLGIEDAKAGIQAIL ASGAQPVGVGRKEELGEGLPIVPETSALTFDYLKKVWLDHEG >gi|307679012|gb|GL456785.1| GENE 105 110181 - 112475 2208 764 aa, chain - ## HITS:1 COG:NMB0390 KEGG:ns NR:ns ## COG: NMB0390 COG1554 # Protein_GI_number: 15676304 # Func_class: G Carbohydrate transport and metabolism # Function: Trehalose and maltose hydrolases (possible phosphorylases) # Organism: Neisseria meningitidis MC58 # 6 759 4 752 752 937 63.0 0 MKQIKRLFQIDPWKIRTTHLDKENLRLQESLTSIGNGYMGMRGNFEEHYSGDHHQGTYLA GVWYPDKTRVGWWKNGYPEYFGKVINAINFIAMDLQIDGQTIDLATTPYEDFSLELDMQN GVLSRQFTIQTPKNKVRFSFERFLSLEKKEAAYIHLTIEMLEGTGTITLHSKLDGDVQNE DSNYEEHFWEERAIETQETLGFVTTKTIPNNFEIERFTVTAGMRHFIDGASVVPTYTQQP LALTAELTVSLNEGETTAITKEVLVVTSRDVPETQQITRVNELFSEMTTLYPEAKAGQAA AWAKRWQLADVVIEGDDEAQQGIRFNLFQLFSTYYGEDDRLNIGPKGFTGEKYGGATYWD TEAYAVPLYLALAKPEVTKNLLKYRHNQLPQAIHNAQQQGLKGALYPMVTFTGVECHNEW EITFEEIHRNGAIAYAIYNYVNYTGDEDYLKDAGLEVLVAIARFWADRVHFSQRHKQYMI HGVTGPNEYENNINNNWYTNTIAAWVLRYTRESYLKFQEETTLKIADDELAKWADIVENM YFPVDNELGIFVQHDTFLDKDLMPVSDLPLSELPLNQHWSWDKILRSCFIKQADVLQGIY FFNDAFSLEEKRRNFNFYEPMTVHESSLSPSIHAVLAAELGMEEKAVEMYQRTARLDLDN YNNDTEDGLHITSMTGSWLAIVQGFAQMKTDHQQLKFAPFLPATWTAYSFHINYRNRLLF VEVAADQVAFTLLDGPAIPLTVYDQKYTLKDRLVLPIRKEEVHV >gi|307679012|gb|GL456785.1| GENE 106 112756 - 114924 2782 722 aa, chain + ## HITS:1 COG:SPy1986_1 KEGG:ns NR:ns ## COG: SPy1986_1 COG1263 # Protein_GI_number: 15675776 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Streptococcus pyogenes M1 GAS # 2 454 6 457 472 655 71.0 0 MKKMFSFEFWQKFGKALMVVVAVMPAAGLMISIGKSLPLIDPNLGLLVTTGGVLESIGWA IIGNLHLLFALAIGGSWAKDRAGGAFAAGISFVLINRITGAIFGVTNEMLADEQAFTHTL FGTKIMVKGFFTSVLEAPALNMGVFVGIIAGFVGAMAYNKYYNYRKLPDALSFFNGKRFV PFVVILWSTIVSIALALIWPNIQAGINNFGLWIAQSQDSAPILAPFLYGTLERLLLPFGL HHMLTIPINYTQLGGTYEILSGAQAGTQVFGQDPLWLAWATDLVNLKGAGDMSKYQFVLE NWTPARFKVGQMIGSSGILMGMALAMYRNVDADKKAKYKSMYFSAALAVFLTGVTEPLEF MFMFAAVPLYVIYAVIQGAAFAMADILPLRVHSFGNIELLTRTPLAIKAGLGGDLINFVL MVIIFGAVTYFLANFLIKKFNYATPGRNGNYDNDNGEEIASGAAGSGVVDQQIAQIVYLL GGKQNIKEVDACMTRLRVSVKDREKVGSEEAWKRAGAMGLIVKDNGVQAVYGPKADVLKS DIEDLLASGVDIPEPVIAESTTGVPTTNFLGKKKDFVAVATGEVIPMAQVNDPVFSQKMM GDGFAVKPLEGEVVAPISGKVLSVFPSKHAIGLQTEEGIEVLVHMGIDTVEMATPAFESF VKEGQSLKAGTKLAKMNLDVIEQAGKETTIIVAFTNSDKVEQVVINQLGTTTAGTVIGQI EI >gi|307679012|gb|GL456785.1| GENE 107 115139 - 115963 858 274 aa, chain + ## HITS:1 COG:SPy1985 KEGG:ns NR:ns ## COG: SPy1985 COG3568 # Protein_GI_number: 15675775 # Func_class: R General function prediction only # Function: Metal-dependent hydrolase # Organism: Streptococcus pyogenes M1 GAS # 3 273 4 269 272 213 40.0 3e-55 MNLLTINTHSWLEEEPLKKLEEIAKVILSSESEIIALQEVNQKVASKKVPLEQLTTFCPV ATQTPVHEDNFAYLIVQYLAEKGQHYYWSWEMSHIGYAIYEEGNALLSKCPLTSEALLIS ESQEPTNYRTRKILVAETESSKGTLTVVSGHFSWWETPCTGFAYEWLQLEKYLAMGQQPL VILGDLNNPAGTTGYQLVENSYLPIQDAFVVAEETSGEATVEKKIDGWEENEAALRIDYA FVPKQWHVRKYEVIFDGRKTPIVSDHFGLLIQLK >gi|307679012|gb|GL456785.1| GENE 108 116023 - 116838 1071 271 aa, chain - ## HITS:1 COG:L135991 KEGG:ns NR:ns ## COG: L135991 COG0345 # Protein_GI_number: 15673866 # Func_class: E Amino acid transport and metabolism # Function: Pyrroline-5-carboxylate reductase # Organism: Lactococcus lactis # 3 267 4 262 262 180 42.0 3e-45 MKISFIGAGNMASAIAKGALKKQFIAAENLYFYDIQVEKTAAFAQEIGAHAVASPQEAIA VADLVILAVKPQFVQAALLEAKEAILDKQPLIVSIAAGTTIAELYQLFETTQPLRLVRVM PNMNALIGAGAAAVCGNAFASPEDIQTVLSLFRAVGQAWELEEQYFSIFTAIAGSTPAYA FLFIDSIARAAVKNGMNKELALEIATQAVLGSAQTLANSTENPWTLIDQVSSPGGTTVAG IVELENNAFISTVIKGIEATILRDQELAKQD >gi|307679012|gb|GL456785.1| GENE 109 116965 - 117927 691 320 aa, chain + ## HITS:1 COG:BH3679 KEGG:ns NR:ns ## COG: BH3679 COG4753 # Protein_GI_number: 15616241 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Bacillus halodurans # 190 309 141 254 257 84 40.0 3e-16 MASKEEQYAAFYQFLETLDCYLTTTNALENEVAQFKENPHREIAGFMLASSETIDVPKGF IRMLYCLEQDGNAYLDQQRCSVSAGQVMIVNEATSVSYQGQGMSMIIFYFKKHYFLDTLL NQLAEEPVMYRFFTEIASSEFENIPRYFVFASQPNSDVHVYSLLLLKQIVKMAYFNNKVT KAAFVLLVVELGQLPREALKMQDNYLSNHQRVEVILAYIEQQIAHVTLAEVAAKFHFHPN YLSNFLKDKTNKTFTEIVLAYRIQLAKNYLKQTDLSIQTIVERIGYQDKAFFYKRFKEEM GMTPKQYRQKEGMADVRRSL >gi|307679012|gb|GL456785.1| GENE 110 117908 - 118207 364 99 aa, chain + ## HITS:1 COG:no KEGG:EF0963 NR:ns ## KEGG: EF0963 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 99 1 99 99 145 98.0 5e-34 MYEEVFEEFQLTVVELPIEFVDDLPVYRGHLKELTFLSAEASSRKKLYQQLLQAYLLYRE ENQAVVEEEEITSSLLSREQLLKYYDGETFDGFQLPSNE >gi|307679012|gb|GL456785.1| GENE 111 118224 - 118517 360 97 aa, chain + ## HITS:1 COG:BH3997 KEGG:ns NR:ns ## COG: BH3997 COG1694 # Protein_GI_number: 15616559 # Func_class: R General function prediction only # Function: Predicted pyrophosphatase # Organism: Bacillus halodurans # 6 94 10 99 101 104 64.0 4e-23 MDTMAKINQFRDERNWRPHHNEKDLALSICLEAAELLELFQWKTAEEGIKQEERIKEELA DVLIYSYMMADNLGFDLDEIIEEKLKKNAVKYPVPEK >gi|307679012|gb|GL456785.1| GENE 112 118662 - 119093 672 143 aa, chain + ## HITS:1 COG:no KEGG:EF0966 NR:ns ## KEGG: EF0966 # Name: not_defined # Def: MerR family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 143 116 258 258 219 73.0 3e-56 MITGTEIDFIVSDSLKALALYKEIFEVHVVEATKYPVGRNEVVFNLYDTRFHMLDANEEF GLKAPDSEHPNTIWFNITVADIVQTHKKALANKCIEMQPVTEMMEGAIQNSLFVDPFGYM WMVHQINQELNFEERTEILEKEM >gi|307679012|gb|GL456785.1| GENE 113 119546 - 119950 374 134 aa, chain + ## HITS:1 COG:no KEGG:SGO_0507 NR:ns ## KEGG: SGO_0507 # Name: not_defined # Def: protein of unknown function/lipoprotein, putative # Organism: S.gordonii # Pathway: not_defined # 4 134 2 138 138 90 42.0 2e-17 MKNKKRINFGVLIATILVVAIIGTIGVKKMTEPTEKEKQIAFLKEHEEEMTEYVKSQNSK IYSVQYDWESVEVGTIGNGTPIGAGKILTIDGKFNSIYDSSFYLQFKFDKSTKLPSIKSM TSYNSFRIGGMLYE >gi|307679012|gb|GL456785.1| GENE 114 119943 - 120155 300 70 aa, chain + ## HITS:1 COG:no KEGG:SAK_0322 NR:ns ## KEGG: SAK_0322 # Name: not_defined # Def: hypothetical protein # Organism: S.agalactiae_A909 # Pathway: not_defined # 3 69 5 71 544 73 52.0 3e-12 MNNLENFNCIYASLSESSYNGRPNAFPKYQNSKEKEEFNYSLDVIDEKGDRTKGGQNLPN SGIVYLQPDN >gi|307679012|gb|GL456785.1| GENE 115 120310 - 120606 320 98 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|323480146|gb|ADX79585.1| ## NR: gi|323480146|gb|ADX79585.1| hypothetical protein EF62_1339 [Enterococcus faecalis 62] # 1 98 1 98 98 164 100.0 3e-39 MNKPTEKERQIAFLKKHEEKMTEYVKYESEYVLLKQYDVKEVTYSWQSVIEVRSMAFSPK TIAVEVSIFDGIGKKLDGFEIYVLPDNVKNPTEIKNIE >gi|307679012|gb|GL456785.1| GENE 116 120625 - 120903 374 92 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|312901489|ref|ZP_07760763.1| ## NR: gi|312901489|ref|ZP_07760763.1| conserved domain protein [Enterococcus faecalis TX0470] conserved domain protein [Enterococcus faecalis TX0470] # 1 92 1 92 518 172 98.0 6e-42 MANLEKYTNIYADLAQGAYIGRKEGFMFAKLTQVQKEELKLNEHATFHFPNAKDAHGNDA STVYLQPDNTVKTIKEKNWVGREKVYKKGLST >gi|307679012|gb|GL456785.1| GENE 117 120982 - 121395 260 137 aa, chain + ## HITS:1 COG:no KEGG:SGO_0507 NR:ns ## KEGG: SGO_0507 # Name: not_defined # Def: protein of unknown function/lipoprotein, putative # Organism: S.gordonii # Pathway: not_defined # 5 90 1 96 138 69 40.0 5e-11 MKNKMRIKFGVLIATIIALAIIGTIGVKKMTEPTEKERQIAFLKEHEEEMTEYVKQQNEK IAKVAFCWESLEQESVGNGLPQGAGDILSIRIQIIDNNNNKINSFGLAIKPNNWNEPTKI KELYTINADYDYYTEGG >gi|307679012|gb|GL456785.1| GENE 118 121397 - 122959 1500 520 aa, chain + ## HITS:1 COG:no KEGG:SAK_0322 NR:ns ## KEGG: SAK_0322 # Name: not_defined # Def: hypothetical protein # Organism: S.agalactiae_A909 # Pathway: not_defined # 3 512 5 534 544 282 34.0 3e-74 MADLEKYSNLYADLAQATYNGRSIQFPYSAKKWNDKQLDKYRNKEAVPFTFPNAKDAHGN DASTVYLQPDNTVKTIKEKNWVGRETFYKKGLLTDEKAGYNSYYVTDTPTLSPKTQHTYF ATRGSDGVSMDVKKGWSGNNLNDWVNNNGSFTLFNAYLPQAKLANEAMHQKIMEMSAKAP NATMSITGHSLGTMISIQAVANLPQADLAKIDKIVLFQGPDARESINKMSQQAQENLQQL EEQGKIDYYVNAFDIVSMLNRNKKGVDEIGRVHYLLPKTFTTTFDLTDKYGSSHDFGQYQ LNPDGTPKEANLKEHGYIFAAGVKVSKLIDKYLGKIMDASGESLAKNSLQFLLSLLSEEN RQKIIKEYEKIIHEAKIASQWQGKVSRIQKSLASASGSEKIELRSELAELVAKQAQQAGK EYELLVKNILQEAEDEVQTVSKEICESAMSIRQYLSYAEVQAMIAPYEKSRLWDSAEATN TSNQAKQYKQKLTDFSGKLTTVAKNIQAYDQQARSSLFQK >gi|307679012|gb|GL456785.1| GENE 119 122979 - 123263 325 94 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315149489|gb|EFT93505.1| ## NR: gi|315149489|gb|EFT93505.1| hypothetical protein HMPREF9499_02285 [Enterococcus faecalis TX0012] # 1 94 1 94 94 116 98.0 5e-25 MDEREFQEKLEVEQKARERVAIQTVITAKKTRITTTKQNTTASLKELSEAMFQQTNSALP NALNGALQGKSAESAEKFLKGSQRPNLKTPVKGE >gi|307679012|gb|GL456785.1| GENE 120 123271 - 123576 286 101 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229548909|ref|ZP_04437634.1| ## NR: gi|229548909|ref|ZP_04437634.1| conserved hypothetical protein [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis X98] conserved domain protein [Enterococcus faecalis PC1.1] hypothetical protein HMPREF9498_00191 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9505_00323 [Enterococcus faecalis TX0109] hypothetical protein HMPREF9504_01877 [Enterococcus faecalis TX0102] conserved hypothetical protein [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis X98] conserved domain protein [Enterococcus faecalis PC1.1] hypothetical protein HMPREF9505_00323 [Enterococcus faecalis TX0109] hypothetical protein HMPREF9498_00191 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9504_01877 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9500_01650 [Enterococcus faecalis TX0017] hypothetical protein HMPREF9501_03012 [Enterococcus faecalis TX0027] hypothetical protein HMPREF9497_01076 [Enterococcus faecalis TX4244] hypothetical protein HMPREF9502_01580 [Enterococcus faecalis TX0031] hypothetical protein HMPREF9503_02289 [Enterococcus faecalis TX0043] hypothetical protein HMPREF9508_02651 [Enterococcus faecalis TX0312] hypothetical protein HMPREF9516_01174 [Enterococcus faecalis TX1302] hypothetical protein EF62_1344 [Enterococcus faecalis 62] conserved domain protein [Enterococcus faecalis TX1467] # 1 101 1 101 101 116 100.0 6e-25 MEEQRRKRQYLEEQYYEEKNKIHRQQEVLSNQLVNFRRETGQLVDKVNYLTKNDQWHKQQ FYHAMEQSDHLIHQEGNRYRQQLEEKEREWTRTYRKELDKL >gi|307679012|gb|GL456785.1| GENE 121 123967 - 124275 518 102 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375551|ref|NP_814705.1| 50S ribosomal protein L21 [Enterococcus faecalis V583] # 1 102 1 102 102 204 100 3e-51 MYAIIKTGGKQVKVEVGQAIYVEKLNVEAGEKVVFDEVILVGGESTKVGAPTVAGATVEG TVEKHGKQKKVVTFQYKPKKHSHRKQGHRQPYTKVMIEAINA >gi|307679012|gb|GL456785.1| GENE 122 124308 - 124652 564 114 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375552|ref|NP_814706.1| hypothetical protein EF0969 [Enterococcus faecalis V583] # 1 114 1 114 114 221 100 1e-56 MIKGSFKRTGSGRIVSFELTGHAEAGPYGSDVVCAAVSALAISTVNGIDALAGFEPIVEV DDVEGGYLYVEMLTTVNQEQKNIAQILLENLLLGLQSIENENTEFIQIKTITEK >gi|307679012|gb|GL456785.1| GENE 123 124665 - 124952 485 95 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375553|ref|NP_814707.1| 50S ribosomal protein L27 [Enterococcus faecalis V583] # 1 95 1 95 95 191 100 2e-47 MLLTMNLQLFAHKKGGGSTSNGRDSESKRLGAKSADGQTVTGGSILYRQRGTKIYPGVNV GIGGDDTLFAKVDGVVRFERKGRDKKQVSVYPVAN >gi|307679012|gb|GL456785.1| GENE 124 125189 - 125602 487 137 aa, chain + ## HITS:1 COG:YPO3717 KEGG:ns NR:ns ## COG: YPO3717 COG3223 # Protein_GI_number: 16123855 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Yersinia pestis # 2 111 17 126 135 65 35.0 3e-11 MILDIVLGILGVFLLVFMASYLVDLATYLMKPMTPDNFSVIMQEIISFFMLFEFIMMILR YIQEGHHIPIRYLILICLTAILRQLMVAHGDGLQTLLLSLSILLLVVVLFILGLNGSKFY TLGKAKVEEDHEQDFHH >gi|307679012|gb|GL456785.1| GENE 125 125673 - 126488 658 271 aa, chain - ## HITS:1 COG:L42411 KEGG:ns NR:ns ## COG: L42411 COG1408 # Protein_GI_number: 15673582 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Lactococcus lactis # 5 267 10 276 278 187 38.0 3e-47 MNVYLFLALFFIIIGILSYSFFIEPNCLVIHKNQIKVTESGKTLRIVQLSDIHLKKNYSV KALKQIVEKTNTLQPDIVVFTGDLFDDYARFGIEIQDEVSQLFRKINAPYGKFAIYGNHE YSGLDTNFYETILEAADFTVLKNTGKLLPVSHRISLYVAGLEDSLYGQTDLAAALVNRPT GTPTLLLTHEPDVADSAVNKNIDLILAGHSHGGQIRLPFFTYKNQLAKKYTHGLYHLEDE TPLIVHPGIGTTKISARFGVLPTIELIELTI >gi|307679012|gb|GL456785.1| GENE 126 126660 - 127724 1625 354 aa, chain + ## HITS:1 COG:lin1391 KEGG:ns NR:ns ## COG: lin1391 COG0006 # Protein_GI_number: 16800459 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Listeria innocua # 2 354 1 353 353 428 58.0 1e-120 MMARVEKLRELMKENNLQGFLVTSPYNLRYLTNFTGTTGLAMITLDKAFFVTDFRYTEQA AEQATGFTIVKNTGHIFDEVADLAERLQLDNLAFEETQVSFADYSLLEEILPCELVPVMG LIEELREVKDEEEVAIIEKACAIADQGFAFVLEMIKPGMTEIEVANQLDFFMRSKGASGV SFETIVASGLRSAMPHGVASHKVIEKGELITLDFGCYYEGYVSDMTRTFAIGSIQPKLKE IYDIVLEAQLKVLAEAKPGLTGIQLDAIARDHIASYGYGDAFGHSTGHGIGLEIHEGPNV SFRADKQFVPGNVITDEPGIYLPGIGGVRIEDDLLITAEGNRVLTHAPKELIIL >gi|307679012|gb|GL456785.1| GENE 127 127738 - 128058 486 106 aa, chain + ## HITS:1 COG:BS_yvdC KEGG:ns NR:ns ## COG: BS_yvdC COG1694 # Protein_GI_number: 16080518 # Func_class: R General function prediction only # Function: Predicted pyrophosphatase # Organism: Bacillus subtilis # 1 103 1 103 106 99 48.0 1e-21 MDIQEYQRFISAFYKKRNWYQYDPFIRSNFLTEEVGEVCRAIRTIEIGRDRPDETVLADE ENLENLTEELGDVLDNLFILADKYDISLEMIMQKHRTKLMERYPEE >gi|307679012|gb|GL456785.1| GENE 128 128391 - 128822 781 143 aa, chain + ## HITS:1 COG:SP0434 KEGG:ns NR:ns ## COG: SP0434 COG1302 # Protein_GI_number: 15900352 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 13 136 5 125 129 114 50.0 8e-26 MSEEKNLVINANDSLGEIVIAPEVIEVIIGIAASKVEGVYGMRGTFANNVNELLGRAAHG KGVYLRTEEEGLKVDIYCYLNYGVSVPKVALEMQDRVKQQVLFMTDIDLVEVNIHVVAVV PEKIPQPDLNELFPEDEDGEENE >gi|307679012|gb|GL456785.1| GENE 129 128815 - 129267 637 150 aa, chain + ## HITS:1 COG:SPy1818 KEGG:ns NR:ns ## COG: SPy1818 COG0781 # Protein_GI_number: 15675648 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Streptococcus pyogenes M1 GAS # 7 140 8 138 150 105 44.0 2e-23 MSKTELTRHEIREKALQALFPLDFNADLTKQDAIDYALAYDNREIVSEDGEDLVPTYLDL LVGGVCSRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVPNIVALNEAV ELSKKYSDDRSRKFVNGVLSNVMKEIDSEA >gi|307679012|gb|GL456785.1| GENE 130 129371 - 130216 1113 281 aa, chain + ## HITS:1 COG:SP0825 KEGG:ns NR:ns ## COG: SP0825 COG0190 # Protein_GI_number: 15900713 # Func_class: H Coenzyme transport and metabolism # Function: 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase # Organism: Streptococcus pneumoniae TIGR4 # 1 277 1 278 285 363 66.0 1e-100 MSTVINGRELADQMQAEIQKDVEKMTQQGIQPGLVVLLVGENPASQTYVRNKERAAAKIG ILSKVEKLPETISEEELLAEIDKYNQDSRFHGILVQLPLPKHIDEEKILLAIDPKKDVDG FHPMNLGRLFVGKPEMIPCTPYGIMKMFEAYDIDLTGKRAVVIGRSNIVGKPMAQLLLMK NATVTIAHSKTEHLAEVAKEADILVVAIGRGHFVTKEFVKPGAVVIDVGMNRNQEGKLIG DVAFDEVSEIASYITPVPKGVGPMTITMLMYQTVEAAKKQK >gi|307679012|gb|GL456785.1| GENE 131 130226 - 131572 1573 448 aa, chain + ## HITS:1 COG:L0254 KEGG:ns NR:ns ## COG: L0254 COG1570 # Protein_GI_number: 15672836 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII, large subunit # Organism: Lactococcus lactis # 4 439 3 417 417 380 50.0 1e-105 MTQQYLTVTALTKYLKRKFDADPYLGRVYLTGEISNFRFRANAHQYFSLKDDHAKISAIM FKSAFQKLKFQPKEGMKVMVVGRISLYENSGSYQIYIEHMEPDGVGALYQALAELREKLG KEGLFEGPKQQLPRYPKRIAVVTSPSGAVIRDIITTVKRRYPIAQLVLFPTLVQGEQAAD DIVRNIQRADAQGDFDTMIIGRGGGSIEDLWPFNEEKVARAIHAATTPIISSVGHETDVT IADMVADVRAATPTAAAELAVPVLNEELLRISERRSRLEQSFLYLLQQRTERFQRLQNSY VFKQPERLYEGQTIKLDRMTQRLFQAMTTIHHQKQRQAQGIIAQLQQQTPKGQLRESQQQ LAFLQRNLQTQMTQLFLNKQKQFTSAVQQLDLLSPLKIMGRGYSYTTKEDRVVKTVTELQ PADQLTIHYADGTVQANVETITAKKEEF >gi|307679012|gb|GL456785.1| GENE 132 131574 - 131804 460 76 aa, chain + ## HITS:1 COG:no KEGG:EF0980 NR:ns ## KEGG: EF0980 # Name: xseB # Def: exodeoxyribonuclease VII, small subunit # Organism: E.faecalis # Pathway: Mismatch repair [PATH:efa03430] # 1 65 1 65 76 78 100.0 1e-13 MPAKEKTFEESLNALEEIVQRLERGDVPLEEALAAFQEGMALSKQCQDTLEKAEKTLTKM MTENNEEIVFEESEEA >gi|307679012|gb|GL456785.1| GENE 133 131804 - 132685 1211 293 aa, chain + ## HITS:1 COG:BS_yqiD KEGG:ns NR:ns ## COG: BS_yqiD COG0142 # Protein_GI_number: 16079484 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Bacillus subtilis # 1 265 1 271 272 220 50.0 2e-57 MTNFSQQHLPLVEKVMVDFIAEYTENERLKEAMLYSIHAGGKRLRPLLVLTTVAAFQKEM ETQDYQVAASLEMIHTYSLIHDDLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAF QLLSLSQLGLSEKVLLMQQLAKAAGNQGMVAGQMGDIEGEKVSLTLEELAAVHEKKTGAL IEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALN KSTYPALLGIAGAKDALTHQLAEGSAVLEKIKANVPNFSEEHLANLLTQLQLR >gi|307679012|gb|GL456785.1| GENE 134 132699 - 133514 893 271 aa, chain + ## HITS:1 COG:lin1403 KEGG:ns NR:ns ## COG: lin1403 COG1189 # Protein_GI_number: 16800471 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase # Organism: Listeria innocua # 1 269 3 272 274 353 66.0 2e-97 MKKERVDVLAFNQGLFETREKAKRSVMAGLVYNDKNERLDKPGEKISVETPLHTKGQVMP YVSRGGLKLEKALNVFAINVQGKTMLDIGSSTGGFTDVALQNGARLSYALDVGYNQLAWK IRQDERVVVMERTNFRYSKPEDFTEGVPDIATIDVSFISLRLILPPLHDILKKGGSVVAL IKPQFEAGKEFVGKKGIVRDPETHQMVVEEITRFAMNNGYDVKNLDFSPITGGEGNIEFL AHLVSVEGEGSYQATESIEEVVAHAHQKLAE >gi|307679012|gb|GL456785.1| GENE 135 133653 - 134102 475 149 aa, chain + ## HITS:1 COG:BS_ahrC KEGG:ns NR:ns ## COG: BS_ahrC COG1438 # Protein_GI_number: 16079481 # Func_class: K Transcription # Function: Arginine repressor # Organism: Bacillus subtilis # 1 149 1 149 149 117 40.0 8e-27 MRKQDRHRLITRLLTEKNIQKQEDFVHYLQEKGVAVTQATISRDIKDMKLIKVPSAEGGY RYSLPLETQANTSAKLAKLLKDAFVAAEQMEKYVVLRTIPGNAAACGSLIEKNYQEKLFA VINDDDSVLMIARTEEAAEKLHKELLSYL >gi|307679012|gb|GL456785.1| GENE 136 134120 - 135793 2071 557 aa, chain + ## HITS:1 COG:lin1405 KEGG:ns NR:ns ## COG: lin1405 COG0497 # Protein_GI_number: 16800473 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Listeria innocua # 1 557 1 558 563 484 49.0 1e-136 MLQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRGSSDYIRQGAN KCTLEGLFSMPKSQELKQLLEELGIETEEDSLVIQRDISASGKNVCRVNGRIVNITNLKR IGEYLVDIHGQNEHQELMQSERHIDMLDEFGGKKLLAVKEKYTQAYQEYRALEAKVRKRQ KNEKEFAQRMDMLHFQSDEIASAQLVAGEEEQLLEERNKLNNFQKIADALTISYAALNGE DDSSLDKIGTSMNELASIESLDPEYKSLSDTVQNAYYLLQEASGDLSRLIDGLELDEGRL NEVENRLELIRQMKRKYGDSIETILSYYEEITKELAEADFLEGGTGDLEALLAEKQQAAH QQALALRKERKRLAKELEQQILTELKELYLERTEFEVRFTELEHLQENGLDGVEFYITTN PGEPLKPLVRVASGGELSRVMLAMKTIFSQMQGITSIVFDEVDTGVSGRVAQAIADKIYQ ISENSQVLCITHLPQVAAVADEHYFIEKEIVAGRTETSVRILSEKERVNEIARMLAGSEI TKLTIEHAQELLAMAKK >gi|307679012|gb|GL456785.1| GENE 137 135884 - 135994 121 36 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNDKEQSRFSKITKVVVWLMLIAIVGSTVLTAILSL >gi|307679012|gb|GL456785.1| GENE 138 136062 - 137018 796 318 aa, chain - ## HITS:1 COG:lin0651 KEGG:ns NR:ns ## COG: lin0651 COG0598 # Protein_GI_number: 16799726 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Listeria innocua # 1 294 1 292 316 182 36.0 6e-46 MINYLLLKNDYFEPCSPDDEALSWISVESPTEEEIERLVNQYHLPTDYLTGVLDDEENAR VEGFRHEKLQTPTLLLFRYPKASISPSGYLQVETVPIALIATVDNKLITVSNGPNDIVHG IQKEAFTHQDLSIEKALILALSWKMALSFNKNLQALIQQTNKLEGELQVATENSQLYQIM DIQKSLVYFEAALTDNLKVLKRLYSAEIFNHPEKHLPFLRDILIELEQGLNTTKIQLKLV DNISNTFSAIVSNNLNNVMKILTSLTIVLTIPTIIGGIYGMNVKLPFAEHEYSFWIIFAI TTLICIISIRILKKKNLL >gi|307679012|gb|GL456785.1| GENE 139 137293 - 137664 199 123 aa, chain + ## HITS:1 COG:no KEGG:EF0987 NR:ns ## KEGG: EF0987 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 123 8 130 130 170 100.0 1e-41 MVSFSAIMLFWYIFPVIVLFACNFLVSTFSLTERWKIKAPDLAIPFLFIGIHELSKDSYD ESIMPYFVISILLLGVAVALFQAYYYGEILYRRYFKMFWRLTFLLTFVLYVLLILLNISH YLL >gi|307679012|gb|GL456785.1| GENE 140 137953 - 138384 533 143 aa, chain + ## HITS:1 COG:BS_yllB KEGG:ns NR:ns ## COG: BS_yllB COG2001 # Protein_GI_number: 16078577 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 141 1 141 143 204 65.0 6e-53 MLMGEYQHNIDAKGRLIVPSKFREELGEKFVVTRGMDGCLFGYPLNEWSQLEAKLQEMPL AKKDARTFVRFFYSAATECEIDKQGRINIPANLRTHASLEKGCVVIGVSNRIEIWSDERW HAFSDEAEENFDELAETMIDFGF >gi|307679012|gb|GL456785.1| GENE 141 138399 - 139355 1063 318 aa, chain + ## HITS:1 COG:lin2147 KEGG:ns NR:ns ## COG: lin2147 COG0275 # Protein_GI_number: 16801213 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis # Organism: Listeria innocua # 5 315 2 310 312 441 72.0 1e-124 MTEEFRHYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKA LAHAKTRLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGF SYHQDAPLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQP IETTGELVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNG RISVITFHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSE NNRSRSAKLRIAEKIKSR >gi|307679012|gb|GL456785.1| GENE 142 139372 - 139779 562 135 aa, chain + ## HITS:1 COG:no KEGG:EF0990 NR:ns ## KEGG: EF0990 # Name: not_defined # Def: cell division protein # Organism: E.faecalis # Pathway: not_defined # 1 135 1 135 135 206 99.0 3e-52 MAELKKVNDFHYEAPEMDQPIVATEQDRKMQEETLPVPTLLPKKKLKNVSLLEKLIGVVL VCATIGIAIATIQVRTTIVQTMNDITETQAVIKEKEDNALKLEQERSELSKSDRIKDVAK KQGLENNGDNVRTVK >gi|307679012|gb|GL456785.1| GENE 143 139779 - 142007 2525 742 aa, chain + ## HITS:1 COG:SP0336 KEGG:ns NR:ns ## COG: SP0336 COG0768 # Protein_GI_number: 15900267 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Streptococcus pneumoniae TIGR4 # 9 738 9 748 750 496 38.0 1e-140 MSKRHKFKQFMKKKNLNPMNNRKKVGIILFATSIGLFFLFAFRTTYIVATGKVAGVSLKE KTASLYEGSQVVKAKRGSILDRYGNPIAEDATSYSLYVVLSKKYTGQNNEKLYAEKKDFD DIAEILAKYTKLDKKTALKYLNNGIHEDGSTQYQVEFGTGGQNITLETRQKIEADLKKKK ISGVYFNEHPARLYPNGQFASHFIGYTKAANPDDDKEGLVGAMGLEQTYNDILSGTDGRV YFEKDIYGNALPGTVAEEKKAVDGQDIYTTLDSRLQNTLEDLMTQVNEKYEPVSMTAMLM EAKTGEIVAMSQRPTFNPETKQGLDDNGTWQNLLVESPYEPGSTIKLFTTAASMEQGQFN PNELFNRVGGIQVGDVTVNDHDYTRLNGKEYLNYRQAISWSSNIGMVKLEQKMGDEKWME YLKKFGFGTSTHSGLSGESAGKLPGTNFVDRAMSAFGQAITVTNFQMMKGFSAIANDGSM LQPHYISKIVDKNTGKETITEPQIVGTPIKAQTAQQIRTYMIDTVEDPTYGIAYDIYKVP GYHVAAKTGTAQISDGKGYVDGASQVLSSVVEMVPADNPEYVLYITLRQAKSGSPSEAMA AIANPLMKLALDIKETDPETTKVASDKVTVADYKNMTPAEALANAKVNGVDPVIIGDGEK IKKQSTPSGQTLMPNQKLILITNGTNYMPDLTGWSKSDVTKFGDLLGLTVEFKGEGYVTK QSIAAETEITEKKLTVTLEGTE >gi|307679012|gb|GL456785.1| GENE 144 142035 - 143000 1021 321 aa, chain + ## HITS:1 COG:SP0337 KEGG:ns NR:ns ## COG: SP0337 COG0472 # Protein_GI_number: 15900268 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Streptococcus pneumoniae TIGR4 # 11 321 9 324 326 296 55.0 5e-80 MEWTQIFIPIVVSFAITVSVMPLFIGYFQMKKQGQVTREDGPTWHSVKTGTPTMGGVVFL VASLITSLAMGLFFHQFTPSLLIILFILVLYGLLGYLDDFIKVFKKRNMGLNSRQKLIGQ IFGGLVFYFVYRSEGFSDTLDLFGVAEVPLGIFYGVFIIFWLVGFSNAVNLTDGIDGLVA GLGTISFGTYAIIAWKQQQFDVVIICLSVIGGLIGFFPYNRKPAKIFMGDVGSLALGGLL AAISIILHQEWTLLLIGLVYVCETASVILQVASFKLFGRRIFKMSPIHHHFEMCGWSEWK IDFVFWSVGLICSGITLWILF >gi|307679012|gb|GL456785.1| GENE 145 143023 - 144393 1584 456 aa, chain + ## HITS:1 COG:SPy1525 KEGG:ns NR:ns ## COG: SPy1525 COG0771 # Protein_GI_number: 15675424 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase # Organism: Streptococcus pyogenes M1 GAS # 1 452 1 449 452 538 61.0 1e-153 MKKITTYQNKKVLVLGLAKSGVSAAKLLHELGALVTVNDAKQFDQNPDAQDLLTLGIRVV TGGHPIELLDEEFELIVKNPGIPYTNPLVAEALTRKIPIITEVELAGQIAECPIVGITGT NGKTTTTTMIGLLLNADRTAGEARLAGNIGFPASTVAQEATAKDDLVMELSSFQLMGIET FHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTVEDTLILNWNQVELQTLAKTTAA NVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADELGIPGSHNIENALAAICVAKLKNVSNA QIRQTLTNFSGVPHRTQFVGEVQQRRFYNDSKATNILATEMALSGFDNQKLLLLAGGLDR GNSFDELVPALLGLKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSEKDD TILLSPACASWDQYPNFEVRGEAFMQAVQQLKESEM >gi|307679012|gb|GL456785.1| GENE 146 144398 - 145489 1161 363 aa, chain + ## HITS:1 COG:BH2565 KEGG:ns NR:ns ## COG: BH2565 COG0707 # Protein_GI_number: 15615128 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Bacillus halodurans # 1 360 1 359 363 385 53.0 1e-107 MKILVTGGGTGGHIYPALSFVEHVKKEAPATEFLYVGTENGLESQIVPKAKIPFKTIKIQ GFKRSLSPQNFKTIYLFLTSINKAKKIIREFQPDVVIGTGGYVSGAVVYAAHQLKIPTII HEQNSIPGMTNKFLSRYVDKIAICFPDVASFFPKEKTILTGNPRGQEVVTVEKSAILSEF GLDPAKKTVVLFGGSRGALKINQAFEQAFPLFEEREYQVLYASGERYYQELQESLKLSEK KLTNISVQPYIDKMVEVMANTDLMVGRAGATSIAEFTALGLPAILIPSPYVTNDHQTKNA QSLVKVGAVEMIPDAELTGARLVAAIDDILLNNEKRQQMATASKGEGIPDASDRLYQVVK TLV >gi|307679012|gb|GL456785.1| GENE 147 145498 - 146622 1004 374 aa, chain + ## HITS:1 COG:lin2140 KEGG:ns NR:ns ## COG: lin2140 COG1589 # Protein_GI_number: 16801206 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division septal protein # Organism: Listeria innocua # 87 327 12 252 270 150 35.0 4e-36 MWKISNENDIFKKRKPLPPKKSEESQPELTPWQKQNQEYLKKQAEEAASKGENEQAEVTI TLQEQSQEEPQQHLPQETVEEEEHFADRLPNVKKTRNKRLYRRLAFILTCLGTAILVALY FVSPLSRLSEVTVSGNKSVESQAIIQQSKLETGSGLWEQYSNRNYFSANIQKKFPIIKKA NIKLNGINSFKIDIQEYQIVALAATKGGYHPILENGKTLAETTKAAESGKPIFENFKEDK LIPELMASYNKLPQEIKQGISEIKYAPSKTNKDLINVYMNDGNRVIVNISDLSEKMAYYS QVAEQMDKPGIVDMEVGIFSYPYEKESEETGSEVSEDSAVENQEVVDPNAGAATDEANNG TPTNGENQEVQQAE >gi|307679012|gb|GL456785.1| GENE 148 146796 - 148118 1528 440 aa, chain + ## HITS:1 COG:L0207 KEGG:ns NR:ns ## COG: L0207 COG0849 # Protein_GI_number: 15673852 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell division # Organism: Lactococcus lactis # 1 440 1 456 456 442 50.0 1e-124 MAKTGMYVGLDIGTTSVKVVVAEYIEGQMNIIGVGNAKSDGLNRGIVVDIDQTVQAIQRA VRQAEEKAGIQIKSVNVGLPANLLEVESCQGMIAVSSESKEITDEDVRNVASAALVRSTP PERQIVAILPQDFTVDGFEGIKDPRGMLGVRMEMFGVVYTGPKTIIHNIRKCVEKAGLGI NELVITPLALTETILTDGEKDFGTIVIDMGGGQTTTSVIHDKQLKFTHVNQEGGEFITKD ISIVLNTSFNNAEALKINYGDAYPERTSANEEFPVDVIGKSEPVRVDERYLSEIIEARVE QILRKSKEVLDEIDAFELPGGVVLTGGAASMPGIVDLAQEIFEANVKLYVPNHMGLRNPV FANVISIVEYSAQLNDIYHIAKYAIPGEKSKPAQSVAVQQEVRYDTYAEQPQEEYEEFNE RESGEKVTGKIKDFFSNIFD >gi|307679012|gb|GL456785.1| GENE 149 148145 - 149377 1610 410 aa, chain + ## HITS:1 COG:L0208 KEGG:ns NR:ns ## COG: L0208 COG0206 # Protein_GI_number: 15673851 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division GTPase # Organism: Lactococcus lactis # 1 408 1 416 417 437 65.0 1e-122 MEFSLDNNINNGAVIKVIGVGGGGGNAVNRMIEENVKGVEFITANTDVQALKHSKAETVI QLGPKYTRGLGAGSQPEVGQKAAEESEQVISESLQGADMIFITAGMGGGTGTGAAPVVAK IAKELGALTVGVVTRPFSFEGPKRGRFAAEGIALLKENVDTLLIISNNRLLEVVDKKTPM LEAFREADNVLRQGVQGISDLITAPGYVNLDFADVKTVMENQGTALMGIGVASGEERVIE ATKKAISSPLLETSIDGAEQVLLNITGGLDMTLFEAQDASDIVTNAASGDVNIILGTSIN EDLGDEIRVTVIATGIDESKKDRKPHRQTRQAVQPMQQTTQSVEMDQPKSQEEASAFGDW DIRREQNTRPKVDESSLEQVDKKEFDTFHREEPNHNDDELSTPPFFRRKR >gi|307679012|gb|GL456785.1| GENE 150 149394 - 150071 546 225 aa, chain + ## HITS:1 COG:lin2137 KEGG:ns NR:ns ## COG: lin2137 COG0325 # Protein_GI_number: 16801203 # Func_class: R General function prediction only # Function: Predicted enzyme with a TIM-barrel fold # Organism: Listeria innocua # 5 224 6 224 229 232 54.0 4e-61 MIAENLTNINNQLQLACKSSQRSVADVTMIGVTKSVGIEEAAELVQLGVQNLAENRVDKL LEKKAGLEKFNDIQWHLIGNLQRRKVKLIINEIDYFHALDSLSLAKEIQKRATKVIRCFV EVNITGEESKHGFRKEDVLPFIQELADLDKIQIVGLMTMAPFGASEEVLHATFRELKELQ MTVNEKHLSFAPCTELSMGMSNDFPIAVEEGATFIRIGTALFRDA >gi|307679012|gb|GL456785.1| GENE 151 150085 - 150729 766 214 aa, chain + ## HITS:1 COG:lin2136 KEGG:ns NR:ns ## COG: lin2136 COG1799 # Protein_GI_number: 16801202 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 124 211 64 151 152 92 51.0 7e-19 MSIFNKDALSSFFGLSGEEDDYYDNYEEYEERKAVNEPPRRAARPKPQRPVQQQESYSQP AYTQQSEPVVEKPSARYRSAEAHQERDTQQAAYTEKKVVSMRSSNQSATTNTRRAQESTA NAKTHKITIIEPRVYSEAMSIAKHLFAEEAVLVNFTLVEEDQARRIVDFLTGTVYALDGD IQRVGNEIFLCTPANMEIDSATAQSLANKQFFDF >gi|307679012|gb|GL456785.1| GENE 152 150806 - 151015 98 69 aa, chain + ## HITS:1 COG:no KEGG:EF1000 NR:ns ## KEGG: EF1000 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 69 1 69 69 112 100.0 7e-24 MIYALLSWFPGAYDSAFGRLLSRICEPYLSLFDRLNLRIGMVGFNVMVGIIVLNLAAGGL AVILRAIVY >gi|307679012|gb|GL456785.1| GENE 153 151042 - 151824 1342 260 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375583|ref|NP_814737.1| S4 domain-containing protein [Enterococcus faecalis V583] # 1 260 1 260 260 521 100 1e-147 MNANVYQHFRKDEHPFIDTVGDWLEQVEMQYAPYLTDFLDPRQAYILETLIRQNSDLSFT FYGGYEQAERKRCLIYPAYYIPEETDFGVVLFEIIYPSKFATLSHGKILGTLMNVGVRRE AFGDIISDGDKWQVFIAQEVAGFVVNQVDKIGKITVRLEERDYTQILIPKDGWQEERTTM SSLRLDSVISAVFNISRQRSKQLIESGKVKVNWTETTRPDFALDLLDIVSIRGFGRLQIQ ELEGKTKKEKFRVLLGVLRK >gi|307679012|gb|GL456785.1| GENE 154 151976 - 152677 977 233 aa, chain + ## HITS:1 COG:SP1661 KEGG:ns NR:ns ## COG: SP1661 COG3599 # Protein_GI_number: 15901496 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division initiation protein # Organism: Streptococcus pneumoniae TIGR4 # 1 194 1 183 262 124 43.0 1e-28 MALTPLDIQNKDFSTKMRGYNQDDVDDFLDQVTRDYEDALQKNRELEKSLKHAEEKLQYF NELKDALNQSIIVAQDTADKVKSSANKESEMIITSADNQAKETLVEAERKSNAMIADAEA KSTQILAEAIERARQLAGETEDLKKKTRVFHQRLSLMLETQLEQVKSEEWEEILKPFSSY VGDKHTAVKEILDEQDLDNENETVVNSEENTDAVVEKKPVIEVTEETIEEESK >gi|307679012|gb|GL456785.1| GENE 155 152988 - 155768 3303 926 aa, chain + ## HITS:1 COG:L0350 KEGG:ns NR:ns ## COG: L0350 COG0060 # Protein_GI_number: 15673845 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Lactococcus lactis # 1 926 1 931 932 1358 68.0 0 MKMKETLQLGKTAFPMRGNLPNREAEWQKDWEEKGLYEQRQKLNEGKPTFVLHDGPPYAN GNIHLGHSLNKISKDIIIRSKSMSGFRSPYVPGWDTHGLPIEQVLTNKGVKRKEMTVAEY REKCKEYALSQVDKQRNDFKRLGVSGDWEHPYITLDPEYEAAEIRVFGKMAEKGYIYKGL KPIYWSPSSESSLAEAEIEYKDVKSPSIYVAFNVADGKGLLDNETAFVIWTTTPWTLPAN LGISVNPDFTYVEVKADGRKFVIAKDLLTTVKEAIGWEEVEVLREFSGEKLDRMTAQHPF YDRTSLVMLGDHVTLDAGTGLVHTAPGHGEDDYIVSRKYDLPVISPVDSRGVFTDEAPGF EGIFYDKANPMITELLEEKGALLKLDFFTHSYPHDWRTKKPVIYRATPQWFASISKFRQD ILDEVEKVDWLIPWGKTRLYNMIRDRGDWVISRQRAWGVPLPIFYAENGEAIITPETIEH VANLFAEHGSNIWFMREAKELLPAGFTHPGSPNGEFTKETDIMDVWFDSGSSHEGVLRER EELTFPADMYLEGSDQYRGWFNSSITTSVAINGVAPYKSIISQGMVLDGEGRKMSKSLGN TILPEKVINQMGADILRLWVSSVDAEADVRVSMDILNQVSEVYRKIRNTMRFLLANTSDF NPAEHTVAYADLRSVDKYMTVRLNQVIQEIRENGYEKYNFMHIYRTVMNFLTVDLSSFYL DFAKDVVYIEAENDYQRRCMQTVFYQTLVSLTKLLTPIIPHTAEEIWSFLQEEEEYVQLA EFPGYETFTNEEELMDTWAAFMDFRDNVLKALEEARHSKLIGKSLEAKVTVYPNEQIRQL MTAVDADIAQLLIVSDFEVSKEVAPSEAVQFEDMAILVEKAEGETCDRCRSVRQDVGSDE KLPTLCGRCAHIVEENYPEAVAEGFE >gi|307679012|gb|GL456785.1| GENE 156 155820 - 157343 1745 507 aa, chain - ## HITS:1 COG:L0044 KEGG:ns NR:ns ## COG: L0044 COG0364 # Protein_GI_number: 15674202 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate 1-dehydrogenase # Organism: Lactococcus lactis # 3 507 4 503 503 667 64.0 0 MNEKVALFTIFGGTGDLAKRKLYPSLFRLYKKGLLAERFAVIGTARREWTDEYYREIVRE TIQDLNPTAEEATEFSSHFYYQSHNVNDTEHYNTLKELSDRLNEQYHLEGNHVYYLAMAP QFFGTIVNHLKSQHIISEEGFDRLIIEKPFGSDYESAYELNEEIRAAFPEQDIFRIDHYL GKEMIQNISAIRFANNIFESQWNNRYIDNVQITFAESLGVEDRGGYYDHSGALKDMVQNH ILQVVALLSMEPPVAFSEKEIRTEKVKALRAIRLYSEEEALQNFVRGQYGEGQLADQTFA AYRDEPNVAETSSTETFVAGKFLIDNFRWSGVPFYVRTGKRLTEKGTRINIVFKQVPINV FKDDTCEECDKTDLPPNVLTIYIQPTEGFSLTLNGKEIGQGFNTTPVKLDFRQSAEMTEN SPEAYEKLLLDCLNGDSTNFSHWDEVAQSWRIVDIIRHAWDKTDVSFPNYAAGTMGPQAA FDLLEKDGFTWEWQPDNWYRDRGQLDQ >gi|307679012|gb|GL456785.1| GENE 157 157343 - 158011 870 222 aa, chain - ## HITS:1 COG:SPy0450 KEGG:ns NR:ns ## COG: SPy0450 COG1321 # Protein_GI_number: 15674572 # Func_class: K Transcription # Function: Mn-dependent transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 1 215 1 215 215 158 40.0 7e-39 MTPNREDYLKLIFELGGDEVKVNNKQIVSGLDVSAASVSEMISKLVKEDLVEHSPYQGVQ LTEKGLKKASTLIRKHRIWEVFLVEHLNYTWNDVHEEAEVLEHVTSQTLVNRLADYLNHP EFCPHGGVIPEDNQPIHEEKRQTLTDYPVGTKVRIARVLDEKELLDYLVSIDLNIQEEYT IKEIAAYEGPITIYNENKELSVSFKAANTIFVEPLIRESEEN >gi|307679012|gb|GL456785.1| GENE 158 158183 - 158551 437 122 aa, chain - ## HITS:1 COG:no KEGG:EF1006 NR:ns ## KEGG: EF1006 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 122 1 122 122 243 100.0 1e-63 MKKHWTFLVGASLLTGLAGSILWKKNKQLPSPQELQHNYTGHWWFVDVKKATQHTLEITS SFNVFIDGKQTHALLVELTPKRLVILDKLGYHLIIQCENGVPATLYDEADDETYTLERAI YN >gi|307679012|gb|GL456785.1| GENE 159 158750 - 159481 705 243 aa, chain + ## HITS:1 COG:CAC0144 KEGG:ns NR:ns ## COG: CAC0144 COG1489 # Protein_GI_number: 15893439 # Func_class: R General function prediction only # Function: DNA-binding protein, stimulates sugar fermentation # Organism: Clostridium acetobutylicum # 1 230 1 226 230 191 45.0 9e-49 MKYPNVQLAYFIERPNRFIAHCRLMETNEEVITHVKNTGRGKEVFLPGAVVALSYQPSPK RKTDYDLIAVKKGSFWINIDSQVPNTLVNEALKNGQIVLPGLVGTIQTVKREQRFAHSKF DFLVETDADEQAFVEVKGMTLENKGIGAFPDAPTLRGLKHVTELMAATKAGYRCYILFVV QFEEIKQATIHQEMQPAFAENVGAAIDQGVQVLAYNCHVTPATIELKSQVTFDLLQAFDD PNK >gi|307679012|gb|GL456785.1| GENE 160 159587 - 160585 1508 332 aa, chain + ## HITS:1 COG:lin1837 KEGG:ns NR:ns ## COG: lin1837 COG0673 # Protein_GI_number: 16800904 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Listeria innocua # 2 332 1 327 327 283 46.0 3e-76 MIHLGVIGTNWISHQFVAAALETGAYDLTAVYSRKLATAQEFGSRYGDVEYAIDLETFFG IAHMDTVYIASPNSLHFEQAKQAILAKKNVIVEKPAFSTPDEMAEIIELANKNRVYFFEA ARNIHEQSFQKIAELLPLKNQILGANFTYMKYSSRYDQVLEGKEPNIFSPHFSGGALADL GVYLVYAALGWFGVPNESHYFASKIATGVDGLGTIILRYDQFDVTLNTGKISDSFAPSEI YFENGTLILDSVNAISSAEYHDRAHEERDVLDIQVADNPMIEEARDFAAVLNNPTDKYWG TKYEEWVELARNVNKVVTDLRHSAGIIFDADK >gi|307679012|gb|GL456785.1| GENE 161 160612 - 161913 1366 433 aa, chain + ## HITS:1 COG:SPy1369 KEGG:ns NR:ns ## COG: SPy1369 COG0513 # Protein_GI_number: 15675301 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Streptococcus pyogenes M1 GAS # 4 369 2 358 361 293 43.0 4e-79 MRFLEQLPEAWQEQWQASGFNEPSTIQEKSFTPLREGENVLGISPTGTGKTLAYMLPLLL TVEKGQGNQLLIIAPSQELAMQIAEVARTWAKPLQLTVQTLIGGANVSRQIDKLKKRPEV LIGTPGRILELMKNKKVKAQLLKTIVMDEVDQLFQEEELSLTKQILTHTPTEYQLVFYSA TADRVVNQAQSLSQKLQVIDVTEEDTSAGQVAHYFIRLAPRKKADYLRRLAHTEAFRSMV FFNQVADLGAAEEKLVYENVPAIGLASDQSKQLRKLAIDQFKAERVKLLLTTDIAARGLD FTGVPYVVNVDVPLTEESYIHRSGRVGRMGAQGAVITFINDGTKRDYQRLMKQLAIPYQE IFLYDGALHEQPKAKDELEKKNVVKDTYSEKKSTKERKPETVNSVVKEPQETRKKKKNKK KNTKNKGARKAKK >gi|307679012|gb|GL456785.1| GENE 162 161958 - 164663 2753 901 aa, chain + ## HITS:1 COG:lin1832_1 KEGG:ns NR:ns ## COG: lin1832_1 COG1221 # Protein_GI_number: 16800899 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Listeria innocua # 1 434 1 432 432 476 56.0 1e-133 MKSRKEEILALLQKNETGLTAGAVAEQLMIDRSNASRYLNELFKEKKITRSTGRPVIYSV PTINEGEQVHVDESTSVSFDTLVGANDSLKVSIQQAKAAILYPPRGLHTIIFGKTGTGKS LFAECMYRFAIDSKTLDEDAPFVSFNCADYAQNPQLLFGHIFGVKKGAYTGANEDSPGLM AKADGGILFLDEIHRLPPEGQEMLFTFIDKGVYRPLGESGQTYEASVQIIGATTESSENF LTTFNRRIPMSITLPSLDARTLDERYAIISLFIQQEATRLGQQIDIEREAVLAFMLYDAE GNIGQVKRDLKLVCAKSFLYYRTHNLEHLVIRKRDLSLPVQKGLLKIKEVPERLDQFVDS KSNYLSFQPGTNKIVWSQDPARDMQVYNEIEEKVADLSEADLENVDLEELISKDMNAYFK NYVEELTQHSLHKELLPEAIWDLTNRLYDIAEERLEHTYNETARFAFALHLQSTIERVKE GHVIVHPDLNNVRKNMKKEFQVALDLSSIIEEENNIEIPFDEIGFISMFLSINVGKEERT PENNVGVFVLMHGDSTASSMLKTAQELLGTSIGTAMNMPLTMEVQTMYEQLRNQVITQKE SLNNGILLLTDMGSLNSFGNMLFEETGIRTKAITMTSTMIVLEAIRMASVGRSLEDIYQN IQLSFESVVREQFRSSLQKRQNVKKAVIVTCFTGEGVAAKLYQRILPVIDETKVELIQMQ FIERETFKKHIDNLMEEYEIKAIAGTVDVEYQNIPFFSVYDIFDDEKLNVLKRIASDEVA IDTIVHSLSGVITSVDSLQKLILMLQKTVHQIQTDMHIIVEPGVDAGIMIHLAFLVDALI KGEEARTFPNLAEYVKIHRLEIDVVRTNFMLIERAYRVTIPEAEVAHVTQMFLENEIKSK Q >gi|307679012|gb|GL456785.1| GENE 163 164892 - 165209 488 105 aa, chain + ## HITS:1 COG:lin2831 KEGG:ns NR:ns ## COG: lin2831 COG1440 # Protein_GI_number: 16801891 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIB # Organism: Listeria innocua # 4 104 2 100 101 120 68.0 5e-28 MAKKTIMLVCSAGMSTSLLVTKMQKAAEDRGMEADIFAVSASEADTNLENKEVNVLLLGP QVRFMKGQFEQKLQPKGIPLDVINMADYGMMNGEKVLDQAISLMG >gi|307679012|gb|GL456785.1| GENE 164 165351 - 166814 1595 487 aa, chain + ## HITS:1 COG:lin2856 KEGG:ns NR:ns ## COG: lin2856 COG1455 # Protein_GI_number: 16801916 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Listeria innocua # 1 478 1 445 454 450 56.0 1e-126 MNGLMAWMEKYILPTAAKIGAQKHLVALRDAFIGTLPATMAGSVAVMINAIIRDLPQEFV STYAASLEADKGIFAVLNVIIGINGFVWNGTLAIAGLIFAFSWGYNLAKAYNVNELAGGI VSLATLISGVAFAPNNTAELAVKVPEKIANAINGAEIGASIANNQLTVNPWGWLNLNHLN GNAFFTVMIMGALSTIIFCKLMQADLTIKMPDSVPPAVSKAFAAILPATIALYVVAIINF TVSKLSGGQLLIDLIQKYIAEPFLGLSQGLGAVLIVTVFVQIFWFFGIHGPNVLAPVLEG IWGQAQLINIDIFQKGYEGKTGTAAVLAAIDDGKAYMWVRGSFDAFAWFGGSGGTIVLII AILLFSKRADYLTVGKLSLGPGIFNINEPIMFGLPVVLNPIMFIPFVIAPLVATTIGWVA TYLGLVAPVSQQVAWVTPPLLLSFLATGADWRAPIVALVCMVVTFLIWTPFVIAANKMDP ALGESEQ >gi|307679012|gb|GL456785.1| GENE 165 166858 - 167076 395 72 aa, chain + ## HITS:1 COG:no KEGG:EF1014 NR:ns ## KEGG: EF1014 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 72 1 72 72 120 100.0 2e-26 MISIASAMKQEEIITLLEAYQGENETFTFKEKNGIKLFFEVEGDPETAAQVAKQLIKEQP WGGVLYFQATVV >gi|307679012|gb|GL456785.1| GENE 166 167096 - 167290 171 64 aa, chain + ## HITS:1 COG:no KEGG:EF1015 NR:ns ## KEGG: EF1015 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 64 1 64 64 112 98.0 6e-24 MIRNGLFLCSIGFLIVLYSLNPSSLNYDLLSLTTGIFFIGLGGYLFFKGKKVAEEEATKD EVKR >gi|307679012|gb|GL456785.1| GENE 167 167290 - 167700 432 136 aa, chain + ## HITS:1 COG:no KEGG:EF1016 NR:ns ## KEGG: EF1016 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 136 1 136 136 211 100.0 5e-54 MEITKTLTISADEFYTQLMNSVIFDIRKQTGKTLTRKQLRKFEYIKEYSKNSRAKIVIEE AVENKTYQFRTSTTKNDFSVRYELQPIDEKSCELRYTETMVSYGALQKLNDAVLGIFLSY FKKKQFYKMLKMMETA >gi|307679012|gb|GL456785.1| GENE 168 167976 - 168302 449 108 aa, chain + ## HITS:1 COG:lin2831 KEGG:ns NR:ns ## COG: lin2831 COG1440 # Protein_GI_number: 16801891 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIB # Organism: Listeria innocua # 4 104 2 100 101 121 68.0 3e-28 MAKKTIMLVCSAGMSTSLLVTKMQKAAEDRGMEADIFAVSASEADTNLENKEVNVLLLGP QVRFMKGQFEQKLQPKGIPLDVINMADYGMMNGEKVLDQAISLMGSSN >gi|307679012|gb|GL456785.1| GENE 169 168325 - 168645 465 106 aa, chain + ## HITS:1 COG:lin1830 KEGG:ns NR:ns ## COG: lin1830 COG1447 # Protein_GI_number: 16800897 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIA # Organism: Listeria innocua # 8 101 5 98 100 102 62.0 2e-22 MDGQQNLEAIMGLIMYGGNAKSDAMEAIAAAKSGDFELADKKIADAEESLVHAHHSQTGM LTEEAKGNNMQVTLLTVHSQDHLMTAIAFTDLAKEIIDLYRRIDNE >gi|307679012|gb|GL456785.1| GENE 170 168711 - 169988 1614 425 aa, chain + ## HITS:1 COG:lin2832 KEGG:ns NR:ns ## COG: lin2832 COG1455 # Protein_GI_number: 16801892 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Listeria innocua # 1 425 1 430 435 522 67.0 1e-148 MDGFVQWMEKHFMPKASVIAAQRHLVAIRDAFVVTMPLMILGALAVLINNIPIPGYEDFL NKIFPMMYNDAPIWKSFGGNIWNGTFAIFAVLVAFLVAHNLVKSYGKDGIAAGTVSVASF FAVGGLEGMGATGLFIALIIALISGELFQRLSGNPKLVIKMPDGVPPAVAKSFAALLPAM ITISLFSLITSILFALGIDNIVISFYEAVQQPFMGLANSYPSALLLAFITPFLWFFGLHG ANMVDPLMQTINVPAIDANIKALEAGKAIPYIVNKPFFDSFVNLGGTGATLGLLIAIFIV GRRNKPYKVITNLSLAPGLFNINEPVMFGLPIVLNPIMFIPFILVPMVLVTVAYVATATG LVPAATFMPPWVTPPIIGGFLATKSIAGGVLAAVNLLISILIYMPFVKVATDQYLKQEAA AEAAE >gi|307679012|gb|GL456785.1| GENE 171 170072 - 171466 1948 464 aa, chain + ## HITS:1 COG:BS_ydhP KEGG:ns NR:ns ## COG: BS_ydhP COG2723 # Protein_GI_number: 16077651 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Bacillus subtilis # 2 464 6 465 465 644 65.0 0 MKYQFPENFWWGSAASGPQTEGVFEGDGKGQNIWDFWYQEAPEKFFQQVGPDKTSQFYKK YQEDIQLMKETGHNSFRTSIQWSRLIPDPTTGKVNQTAVDFYNQVIDDLLEHGIEPFMNL YHFDMPMVLQEKGGWESREVVDLYVDFAKTCFELFGDRVKKWFTHNEPIVPVEGGYLYGW HYPDKVNLKEGIQVLYHEALASAKAIAVYHSMNLSGEIGIILNLTPTYPRDEHNEADVNA AKFVDGFFNRSFLDPAVKGHFPEDMVAWAKANDLLPETTPEDLAIIAENTVDLLGVNYYQ PRRAKAKETPVETRPEGLLPEDFYDVYDMPGKKMNPYRGWEIYEKGIYDTLMNLKENYGN IRCYISENGMGVEGEERFVNEQGVIEDDYRIEFVQDHLKWVHQAIQEGSNVQGYHMWTCM DNWSWLNAYKNRYGFIAVDLDDDAKRTIKKSGRWFKEMTANNGF >gi|307679012|gb|GL456785.1| GENE 172 171524 - 172717 1292 397 aa, chain + ## HITS:1 COG:L174946 KEGG:ns NR:ns ## COG: L174946 COG4552 # Protein_GI_number: 15672154 # Func_class: R General function prediction only # Function: Predicted acetyltransferase involved in intracellular survival and related acetyltransferases # Organism: Lactococcus lactis # 15 336 9 332 350 170 35.0 5e-42 MTTKRVKKMGKEEMKEMFDLVIYAFNQEPTAERQERFEKLLSHTQSYGFLIDEQLTSQVM ATPFQVNFHGVRYPMAGIGYVASYPEYRGEGGISAIMKEMLADLAKQKVALSYLAPFSYP FYRQYGYEQTFEQAEYTIKTEDWPRVKRVPGTIKRVSWADGKEVIKDVYLENQRAHSGGV IRETWWLDYTLNRASKPNNQAIYYSSEGKAEGYVIYRIAAGTFEIVEWNYLTNTAFKALA GFIGSHSGSVQSFHWINGFAGKDLNDLMPTPAASVKILPYMMARIVELQTFLEKYPFQSG EKETYSLEIEDSYGPWNEGIWTITIDEQGKATVTKGAAEKEGTAALKADIQTWTQLFLGY RSAETLSFYERLQGDATTAQRLGQRLVKGMPILEDYF >gi|307679012|gb|GL456785.1| GENE 173 172800 - 172919 145 39 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAKTKQEKVARNNKIGQYIAIATGLYYLGKMILDRRQKK >gi|307679012|gb|GL456785.1| GENE 174 173145 - 173477 568 110 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375603|ref|NP_814757.1| hypothetical protein EF1023 [Enterococcus faecalis V583] # 1 110 1 110 110 223 100 5e-57 MAITINIYYSGTNGGAREFAKEMIASGIVEAIRAEKGNSRYEYFFPMDDEETVLLIDSWT DQEALDKHHASPMMTRITELREKYDLHMKVERYVSDVTDPLTKDAAFIRK >gi|307679012|gb|GL456785.1| GENE 175 173591 - 176236 2747 881 aa, chain - ## HITS:1 COG:lin1981 KEGG:ns NR:ns ## COG: lin1981 COG0574 # Protein_GI_number: 16801047 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase # Organism: Listeria innocua # 1 857 1 860 879 934 55.0 0 MKKFIYSFNETHNEGKETLGGKGANLAEMTRLGLPIPQGFTITTRCCMDYLADATFFEEH LQSEILKAVKNLETETGKSFTADNEILLVSVRSGAAFSMPGMMDTILNLGLNDQRVKKFA TLTSPGFAFDCYRRLIQMFGDVVYHIPKELFDQQKERLEQELNKKITAFQEADHFALIVR YQEVFEQYHVVFPQDPVAQLFEAIKAVFDSWNNQRAVVYRNLHHIAHDLGTAVNIQEMVF GNRGLDSGTGVVFTRNPVTGENQLFGEFLLNAQGEDVVAGIRTPEPIRRLRLTMPKVYQD FRHYAELLEYHYRDMQDIEFTIENEKLYILQTRNGKRTAAATVKIALDLAKENRITKQEA LLRVTPDTIDQLIHPVFDQEKRQHMERLAMGLPASPGAASGQIVFTAEKAKELTNLGKKV ILVRQETSPEDIEGMVVSEAIVTSRGGMTSHAAVVARGMGTCCVTGCESLTVNEEAKQLH CGPQVILEGTIISVDGSTGEIYLGEIPTISADNNDDLQELLSWADAYADLTVRANAETTQ DLETAIRFGAAGIGLARTEHMFFGEERVLEMRRLILAESEKEATYALEQLLHFQQEDFYQ MLKVVQDKPMVVRLLDPPMHEFLPHEKNDIQLLAKQLQRFPVTIAKQIERLQETNPMLGH RGCRLGVTQPQIYKMQVTALFTSAIRLVKEGITVYPEVMIPLIAEKEELLYLKRILKETI DGLFEEHKMTPFPYEIGTMIELPRACLIADQLAEEADFFSFGTNDLTQMTYGFSRDDIGK FINTYREKKIITQDPFQSLDQTGVGQLIQLAVEKARRTKPNMSIGVCGEVGGDPQSITFF QTLGLNYISCSPYRVPIAKLAAAQAKILTEPAVTEEQMVLL >gi|307679012|gb|GL456785.1| GENE 176 176406 - 177035 832 209 aa, chain + ## HITS:1 COG:SA1393 KEGG:ns NR:ns ## COG: SA1393 COG0517 # Protein_GI_number: 15927144 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Staphylococcus aureus N315 # 1 204 1 207 207 160 42.0 1e-39 MKLSKRQEQIIAVVKEHQPVSGERISDILAVSRATLRSDLSFLTLSGILKASPKVGYTYE SDNMEAFFFFDVFQTKVQEIMSPPLMVAQDTSIRDAITNLFMYDVGSLYVMDEAKELLGV LSRKDLLRASLNTNIDGTPVAVCMTRVPHVKTCTPEFTILEAADTLQKYEVDSLPVVEKE NPKKVIGKITKTKILTYITQQAKEAAQNR >gi|307679012|gb|GL456785.1| GENE 177 177048 - 177860 999 270 aa, chain + ## HITS:1 COG:lin1980 KEGG:ns NR:ns ## COG: lin1980 COG1806 # Protein_GI_number: 16801046 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 264 1 264 270 225 45.0 7e-59 MKKEIIVYTISDSLGETSQKLLAAASAQYPDISFLNRYNFSFVTTEEELLEILKDALKDK ALVVSTLVSKQLITAAKEFSERTGLLYLDLMAPFFELIQAKAGVDPIEEPGRRHQLDRAY FDKISAIEFAVKYDDGKNPQGFLDSDILLLGVSRTSKTPVSMYLANQGYRVSNLPLIPEV PLPPILEEMDPQKMIGLVCSPETLGQIRSSRLASLGLGNETSYTNVERIEQELAYAEEIF AKYGIPVIDVTAKSVEETAFLIKEKLDERN >gi|307679012|gb|GL456785.1| GENE 178 177931 - 180462 2491 843 aa, chain - ## HITS:1 COG:lin1803_2 KEGG:ns NR:ns ## COG: lin1803_2 COG2898 # Protein_GI_number: 16800871 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 249 837 1 585 613 488 42.0 1e-137 MKQIIHWIKTHTGLLKTLFVIAVSIIVVAQLLSIGKTISFEQLKQIFDEIPLWKLLLMMV IGLVSVTPMLNYDLTLNRILNLKVSKRELLESSWIVNTINNIGGFGGLVSMGLRSEFYGN KTEEKKILPALTHILLFVLSGLSIYSILCFFLVQFDPKMAYLQQYWIWLLGGGLYFPLLY LILHFQKNSSFGNLDAKNRLSLVVSSFLEWTGVLITFISIGYLLDVPIPLIDIVPLYVAA SIIGIASMIPGALGSFDVMMILGLSNLGVDREIIVLWLLLYRLFYYIIPFLIGCLFFTKH LSQKLDTHYRQLLKQITLEIAHKLEVVLLYFSGIMMVLLATIPEAFTQVHWLRDINPFRS HIIIQIPSIVLGFALLIMGRGIADRVKRAYYPTIILLIGAILYSFVVDFSMFSIFYLAIL LFIVIFSKSELYREQLVYSWEWMTIDGFIFGLLTLLYLVIGVYNLPNFPHHRHHFVEFFL FPSERIWLSGFIAILLVMSFNFLFVRYLQGKKHQVGEFPEDSILHNILTTYGGNIDSELV FLHDKQVFLYPKEEPTVFLQFNTINNKCVVMGNPSGNKEDFPAAIDAFLKETDRFGYVPV FYETNEDSVMLLHEYGYEFIKMGEEALVNLETFTMSGKKFKGTRAVFNKITKAGYSFDVL QPPFSTEQMHELKAISDSWLDNRKEKGFSLGFFDEAYLQRNPIAVVRNAEGEMVSFANII PSYTNEVGTIDLMRHHKEKAPSGSMDFLFIHLFEYMKTENIHYFNLGMAPLANVGQSRKS FIQERIAALIYEFGSEIYSFQGLREYKEKFASKWQPRYTLYSKSSWIVYVMIALLIVDQK NID >gi|307679012|gb|GL456785.1| GENE 179 180459 - 181193 537 244 aa, chain - ## HITS:1 COG:lin2547 KEGG:ns NR:ns ## COG: lin2547 COG0596 # Protein_GI_number: 16801609 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Listeria innocua # 10 240 5 233 239 102 28.0 8e-22 MAIEKYFQTIDGSQIFYQIFGKETNYPLVLLHGNGNDHTFFNYQISYFSKEYQVIAVDTR GHGRSTNTQSQLTFPLLAEDLAGIIQQEHLTKINLLGFSDGANIAMVFTHLYPDFVNKLV LNSGNVTMSGLKKYVTIATYFQYWFCRIGAFFSKKLRTRLPIVALLFEDTGLTKQDLEHI PCPTLVITGSRDLIALSHSRAIADAIPDGKLVLVNKQGHLFAKNSPDIFNKTIEKFLKEM KVSK >gi|307679012|gb|GL456785.1| GENE 180 181370 - 181954 533 194 aa, chain + ## HITS:1 COG:no KEGG:EF1029 NR:ns ## KEGG: EF1029 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 194 1 194 194 344 98.0 1e-93 MSLIVLIGAQAVGKMTVGKALEKQLDAKLLFNHQTIDLFANYLGYTERAFQLSDSVRKEL FHAFVENPATNTTKNIIFTVVIAFDQEQDFQFLEEISEIFLSKHESVYFVELVSSTSIRL ERNVHPERLEAKPSKRDVDFSRKELLNTFKEHRLVSHEGELESTFPNVKITKINNSNMTP EEVATKIIATFGLT >gi|307679012|gb|GL456785.1| GENE 181 181977 - 183032 1052 351 aa, chain + ## HITS:1 COG:no KEGG:EF1030 NR:ns ## KEGG: EF1030 # Name: not_defined # Def: endonuclease/exonuclease/phosphatase family protein # Organism: E.faecalis # Pathway: not_defined # 1 351 1 351 351 666 98.0 0 MKKFFKYLGSLMVLLLSIALILIGYLTFREFRPRAVEPVAINKQFSEQTIEKHQSISLVT YNIGYAGLGQTEDFFMDGGKTVQPVNKAMVQQNLTGIEGTLKELPAMIYLFQEVDRRSQR SYEVNQEEELQKQLQLNSAFAYNFKVDYVPIPWPPIGRVESGLLTLSNEKITEAKRIALP NPFRWPVSISNLKRALLETRFSIKGTDKELVVFNLHLEAYDNGDGKIAQSKKLADVLSQE YAKGNYVIAGGDFNQVFKGSHRYPNLGEAGWAPGEIDPADLPKHFSLAYDDQQPTVRVLN KPYTGSYETSQVYVIDGFIVSDNVAVHSVKTKDEQFKYTDHQPVKMEVGLK >gi|307679012|gb|GL456785.1| GENE 182 183081 - 185318 1510 745 aa, chain - ## HITS:1 COG:CAC1464 KEGG:ns NR:ns ## COG: CAC1464 COG0178 # Protein_GI_number: 15894743 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Clostridium acetobutylicum # 2 745 8 750 755 799 51.0 0 MEWIEIKHATQNNLKNVSVNIPKKQLTVVTGLSGSGKSSLVFDTLAAESRRELNDTFSSF VQNYLPKYGRPEVEKIENLPVAIVIDQKKVAGNSRSTVGTYTDIYTFLRLLFSRAGSPFV GYSDTFSFNHPDGKCPTCDGLGKITEINLHQLVDYDKSLNEGPIDFPTFTVGNWRWKRYA HSGLFDLDKKIKDYSPEELALFLYAPQQKLANPPKEWPHTALYEGIVPRMQRSILHTDEG KRHQKYLNHFVTVKRCPDCLGSRVNERVRSCKINQKSIADAVDMPLTELHSFIRSMDLSL IKNIQEELLVRLEALINIGLSYLTLGRATETLSGGEAQRIKIAKYVNSALNDIMYILDEP SAGLHPKDIERISRALLNLKNKGNTVVLVEHNPQLIREADFIIDIGPFAGENGGHVQFSG TYDAFLASKTLTSQALQEPLPLNDQPRKARKSLSIEHATLHNLNNLSVEVPLGVLTVICG VAGSGKSSLAEEIYQKAQADNQEIIHLSQKSITANLRSTPMTYLNIFDKVRKLFAEENHV SPALFSYNSKGACPTCKGKGIIVSDMSFMEDVTSICETCHGTRYKEEVLHYLYNGKNIVE VLALSVKDGYDFFKDQPFALSLKNLLEVGLSYLKLNQSLSTLSGGELQRVKLADTLHQKK AIYLMDEPTDGLHLIDIQQSLQLFNRMVEEGNSLILLEHHIDVIKSADWLIELGPEGGEN GGQLLFTGTPANMLNSTHSITKGYL >gi|307679012|gb|GL456785.1| GENE 183 185480 - 187729 2449 749 aa, chain + ## HITS:1 COG:SPy0902 KEGG:ns NR:ns ## COG: SPy0902 COG0154 # Protein_GI_number: 15674924 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases # Organism: Streptococcus pyogenes M1 GAS # 113 571 3 475 484 264 38.0 5e-70 MKKSILFKKLGIILLISQTLVGVPMLAQESILETTVQTETESVTTETSQTVANLESETTS QTVMQEKESSSAIAESSSRNVVAVTTETTNEIQNSDTDGKAVSAENAFSEADYKQATALE LATLVREKKVTSEELVKIALAITKRENPTLNAVITLREEAALTEAKALQDTGQPFLGVPL LLKGLGQSLKGESNTNGFGFLRDQVAGGTSTFVKALQNAGFIIIGQTNYPELGWKNISDS KLYGVSVNPWNPNHYSGGSSGGAGASVAAAFVPIASGSDAGGSIRIPASWTGTVGLKPSR GVIIGNSNSAKGQTVHFGLSRTVADTNALFETLLTKKDLPAGHLSQAQPIAYTTESPAGT PVSAEAKEAVAEAVAFLKDQGYTLVEVKHPVDGERLMKNYYTVAAGSAGIADFMARQKLK RPLERNDVELLTWALFQTGKNITSEETTAAWTDIALQAQAMDEFYQQYPILLTPTTAATA PSIDNLLLKPEHAAQMEKIDQLSPAEQKQLIYDQWLTAFTYTPFTQQANLFGHPALSVPT YVSKEGLPLGIQFNSALNEDRTLLQLGALFENNHKINQPHVEEPDKDKDPNASGEPDKDK EPDASGEPDKDKEPNASGEPDKDKEPDASGEPEKDKDSDASGKPEKDKETKTSEGPIERK DQNQNPDKAGKTTSESSLDNSLNSSANQGTKSTESTHAFSNKSMIGKQEQLPKKVLPKAG AEVPSTFWVVLGGAFLVTSGTIYIRKTRK >gi|307679012|gb|GL456785.1| GENE 184 187824 - 188753 845 309 aa, chain + ## HITS:1 COG:BH2734_1 KEGG:ns NR:ns ## COG: BH2734_1 COG3173 # Protein_GI_number: 15615297 # Func_class: R General function prediction only # Function: Predicted aminoglycoside phosphotransferase # Organism: Bacillus halodurans # 7 299 4 294 336 188 35.0 1e-47 MRAFEKIPAFQQWQKVEAIHRGWSTDLKFKVTKNQETFLLRIFQQEELLAKQQEYQFIKK VAALGFPSSKPFLCAPIPESEQGYMLLTYLEGEDLSGVLPALSPKGQLNLGVEAGRYLNK IHKLLLPERISQREIARNLYEKKQSQLNKYKESQFCMPYQQPIISYLEKQLPLLQQRPVV YQHGDFHVGNFIYLPTRQVGVIDFNRWDFGDPYEEFYKLQFFSRNVSPLFAYGQLQGYFA GKVPTLFWQFQKLYTFHAGLYSLVWALSFGEKEIRTMEQQYQQLLEDYNCGELLVPKWFS TIQRKGLRF >gi|307679012|gb|GL456785.1| GENE 185 188796 - 188909 95 37 aa, chain + ## HITS:1 COG:no KEGG:EF1035 NR:ns ## KEGG: EF1035 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 36 1 36 217 62 94.0 7e-09 MKLNGIIMITVVGSVLSGCGWQKSKEESQKVQTVQTM >gi|307679012|gb|GL456785.1| GENE 186 188855 - 189445 500 196 aa, chain + ## HITS:1 COG:no KEGG:EF1035 NR:ns ## KEGG: EF1035 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 12 196 33 217 217 307 98.0 1e-82 MAKIERGITESTNRTNNVNTEETRAISATEVSQTTALELEQTTQTQELTELVTEEGTIWN QQKAKQLGQYMETWGQERNQNYQAYQPGHSVAFYTIQVPDDLLSYEPKIQPAIGNNPIWL NWSETGSEGGYCLVAVYSDSATQVAQKHVYLFTLVNGEAKVYVSKEQPVEEQPYLFLKET SNTELKEQFTNLVNNL >gi|307679012|gb|GL456785.1| GENE 187 189564 - 189965 577 133 aa, chain + ## HITS:1 COG:BH1654 KEGG:ns NR:ns ## COG: BH1654 COG0105 # Protein_GI_number: 15614217 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside diphosphate kinase # Organism: Bacillus halodurans # 3 132 2 131 147 133 50.0 6e-32 MKETSLVIIKPDGVERKLVGKIIQRFEDKGIDLLHLKFERLTVETVKEHYEHLKDELFFP ELLAYMTSGPVVVMVVVGDNVVKKVRKLVGATNPLDAESGTLRADYGLSVTKNLIHASDS VQSAKIEMQRFFG >gi|307679012|gb|GL456785.1| GENE 188 190125 - 191735 1732 536 aa, chain + ## HITS:1 COG:MJ0001 KEGG:ns NR:ns ## COG: MJ0001 COG0436 # Protein_GI_number: 15668173 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Methanococcus jannaschii # 186 349 103 251 375 61 27.0 4e-09 MITSDELTENLSPFELSLFLEKKLHEENHNLETLLNAGRGNPNWTAPTPREAFFLLGQFA TKETLREGSEQTAGMIQPSFGRTQRFLNFLAENPSKGATFLQEIWTAEHNYFGMDKEMWL DAMLDYVIGDNYPNPVRCLKACEQPIKAYLNQELFSSEAQPFDIFAVEGGTAGICYLFDT LANNYLLEKGDRIALLLPTFAPYLEIPELPRYDFDVVKIKAEQMIIDGKTTYQYSNKEID KLKDPSIKAVFVVNPSNPTANAMGKPTIEQIKQIVAVDNPKLMILTDDVYGTFVPAFRSL FTELPYNTACIYSYSKYFGATGWRVGTIAVSQENIFDQLLKELPVARKMELQARYATLNA DTSQINFISRLVADSRDIALNHAAGLSSIQQAMMALFSLYALLKDGQAYKDEVMDICHTR EKLLFRTLGIEEPLASLNTAYYCEINFRDWTEKRYGPEFSSYLTKSWTITKVLTSLAEKE KLMLLKADAFGSDKWSVRISLANLATNQYSEVGKRMIRLSEHIKEEWLRQKRQAIK >gi|307679012|gb|GL456785.1| GENE 189 191878 - 192963 1091 361 aa, chain + ## HITS:1 COG:no KEGG:EF1038 NR:ns ## KEGG: EF1038 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 361 1 361 361 647 100.0 0 MKHIKGMLVFIGLFILVGCAPDQEPTKQTTSGPQETKQVKQVTVTNQTTSAVEKQAPTKN DELIANQLTFDSHEYTYEVVTGATQTTFGTTPPAKYTPEEKKKKMFWSNQPPLGLMTGNY YKNEGVFTGGNYGIVEIITEPETQRILNVEFTEFASDPYYDTRYSGVNKRLSDYPEFQAS NTRTDDTLVTVVNGITYVEKQMRDENRVTGNFYTVRGSSTSAREGLMPLAAEMDTWLKEP SKETYIGYAEDLGNGLIARLQVITEEQKIKHVSYDEYFSDEQEKITETALRPFYRQSKYY SPGYNKQTNNSFIHFVDALTKAITTQQTLSVNEEQELQHPSFTTYQRLAEKISTFQNSLK E >gi|307679012|gb|GL456785.1| GENE 190 193078 - 193881 969 267 aa, chain - ## HITS:1 COG:SP0286 KEGG:ns NR:ns ## COG: SP0286 COG0561 # Protein_GI_number: 15900220 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Streptococcus pneumoniae TIGR4 # 2 263 3 267 270 209 40.0 4e-54 MKKLIAIDLDGTTLNAQSLISPKTEQTLKKAIDNGHYVSIATGRPYRMSHQFYQQLGLTT PMVNFNGALVHIPEKKWDLESEANIERDLVFDILAQKKELQLDFVAAENKETFYIDTLDG FDPKFFASKATLDNLLTAKNLRTNPTSMMVRTTPNQAEKVADTLTKQYGDYIDVRTWGGP MPILEMVAKGIQKAHGVDQVANFLSVKPADIIAFGDEHNDEEMLSYAGWGVAMNNATDKI KSVANDVTEKTNDQDGLADYLENYLDL >gi|307679012|gb|GL456785.1| GENE 191 194033 - 194662 517 209 aa, chain + ## HITS:1 COG:lin2252 KEGG:ns NR:ns ## COG: lin2252 COG4330 # Protein_GI_number: 16801316 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 9 185 9 191 213 80 33.0 2e-15 MKNSRNYLRVITLIYCIYMWLFATHFHFMALNVLLAYIPIELSYLLNAEKRKRDWLIGFA WLIFYPNAPYLFTDFFHLETLSIYRGFNTIFANQIGDWWAFVCLTSGIVIYGLLGMKTVT TVSQKLQSYCDYRTIVVFQASLHFLSALAIYVGRFDRLHSVYLFMSPIETVKIIFFDWSL QKLMFILLMMFLQMLLFGLVQLLGKEEAM >gi|307679012|gb|GL456785.1| GENE 192 194814 - 196220 1755 468 aa, chain + ## HITS:1 COG:SPy1736 KEGG:ns NR:ns ## COG: SPy1736 COG2252 # Protein_GI_number: 15675585 # Func_class: R General function prediction only # Function: Permeases # Organism: Streptococcus pyogenes M1 GAS # 1 468 1 486 486 503 66.0 1e-142 MNTFFKLKENKTTVSTEIMAGVTTFFAMSYILFVNPSILSETGMPFQAVFLATIIASIIG TLIMGLFANVPYAQAPGMGLNAFFTFTVVFGMGYTWQQALAMVFICGLINILITVTKIRK MIIKAIPESLQHAIGGGIGIFVAYVGLKNAGLLSFTVQAEPQNGVVNGSSIVPALGNFDN PAIILAVIGLVLTTILVVTNVRGAILIGIVVTTLVAIPMGVVDTASVDWHANSLGNSFKE LGTTFGAAFGAEGLQSLFSDSSKIPQVLMTIIAFSLSDTFDTIGTFIGTGRRTGIFSKED ELALEDSKGFSTKMDKALFADAIATSIGAIFGTSNTTTYVESAAGIGAGGRTGLTSVVVA ILFALSSLFSPLIAIVPAQATAPALILVGIMMLASFKDINWTDLEDAIPAFFASIFMGLC YSISYGIAAGFIFYAVVKVVKGKAKEVSPIIWVIDALFILNFVILAIL >gi|307679012|gb|GL456785.1| GENE 193 196430 - 197626 962 398 aa, chain + ## HITS:1 COG:L60571 KEGG:ns NR:ns ## COG: L60571 COG0477 # Protein_GI_number: 15672648 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 3 397 7 401 405 431 57.0 1e-120 MKIKWKQNLLVAWIGCFFTGASISLVMPFIPVYVEQLGTPKSQVELFSGLAISVTAFAAA IVAPIWGNLADRKGRKIMMIRAAAGMTITMGALAFVPNVYWLLIMRFMNGILSGYIPNAT AMIASQAPKEKNGWALGTLSTGAIAGTLIAPSIGGALAQWFGMENVFIITGVILFITTLL TIFLVKEDFQPVEKKDLLTTKEIFSKMDHVSVLIGLFVTTLILQLGITSISPILTLYIRS LSGDTENVLFVSGLIVSIAGVSAIISSPTLGKIGDRIGNQKVLLGGLILSFICYIPMAFV QTPFQLGVLRFLLGFSTGALMPSINTLISKITPTEGVSRVYSYNQMCSNFGQVLGPMVGS TVAHGFGYSSVFLVTACFVLGNIGLSFFNFRKVLNKKL >gi|307679012|gb|GL456785.1| GENE 194 197681 - 197866 237 61 aa, chain - ## HITS:1 COG:no KEGG:EF1043 NR:ns ## KEGG: EF1043 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 61 1 61 61 101 100.0 1e-20 MRYLVVFFWTFALGQVVGYIGGALSGGSYDFKMTTILSLATAVIILLIAHFAVPKETKPV K >gi|307679012|gb|GL456785.1| GENE 195 197984 - 201313 3244 1109 aa, chain + ## HITS:1 COG:lin1609 KEGG:ns NR:ns ## COG: lin1609 COG0587 # Protein_GI_number: 16800677 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Listeria innocua # 1 1109 1 1108 1108 876 44.0 0 MSFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQ PIIGLRLEYTPAEKEGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFYLAEHQSLLSDLF AVTLSAKGEVAQTFFEDEQQAVHAFQQLASYFDPQSLFVEHSFSMNQQRNPALFSFYQRE QLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQTPEIEGLNYLREAETTMEQMLQ IAGSEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDNQTAGSYLRSLCLEKLPERVPHLNE VYQKRLEKELTIIHNMGFDDYFLIVWDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDV DPIKYDLLFERFLNPERYTMPDIDLDIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAK MVLRDVARVFGLSQSEANRWSAAVPNKLKITLEEAYQESKRMQELVNFSPNNQLLYKTAV QLEGLPRHVSTHAAGVVISDENLLNLVPLQPGSNEILLTQFTMNDVEKIGLLKMDFLGLR NLSIIDDTLTAVKRVYNRTIRLNQIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLG PTSIEDIAAVNALYRPGPMQNIDVFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIM QVAAKMAGFSLGQADILRRAISKKKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERF ANYGFNRSHAFAYSFIGFQMAYLKVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTI LQPSINQSHYSFYLNQQQQILFGFSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDR KWLKVENIEPLIAIGAFDEIAPNRRQLAVGLESNIQSILLSGGSMDLLETLKPKEEEIAD YPLEERLEQEEQYLGVYLSGHPTEEFKKTRLAKQTQLVHELFENQPTKLLIYVKNIRTIR TKKGEQMAFVDGDDTTGSISLTLFPTVFRQLRQSVEKGQVYYVEGKVERSTYNQELQILV QRIEKAQQVETSISDETCFIRITKDVEQTDVFQKMKEVLSRHAGHIPVIVYFEKTGKKIV LNEENWVAHTSASQQQLAYVLGEQNVIFK >gi|307679012|gb|GL456785.1| GENE 196 201486 - 202448 1279 320 aa, chain + ## HITS:1 COG:lin1606 KEGG:ns NR:ns ## COG: lin1606 COG0205 # Protein_GI_number: 16800674 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphofructokinase # Organism: Listeria innocua # 1 314 1 313 319 439 71.0 1e-123 MKRIGILTSGGDAPGMNAAIRAVVRKSIFDGIEVYGINYGFAGLVAGDIRRLDVADVGDK IQRGGTFLYSARYPEFATEEGQLKGIEQLKKFGIEGLVVIGGDGSYHGAMALTKRGFPAV GIPGTIDNDIPGTDFTIGFDTAINTVLESIDRIRDTATSHVRTFVIEVMGRNAGDIALWS GVAGGADEIIIPEHDFDMKNVAKRIQEGRDRGKKHCLIILAEGVMGGNEFADKLSEYGDF HTRVSILGHVVRGGSPSARDRVLASKFGSYAVELLKEGKGGLCIGMLDNQVVAADIIDTL ENNKHKPDLSLYELNHEISF >gi|307679012|gb|GL456785.1| GENE 197 202513 - 204270 2346 585 aa, chain + ## HITS:1 COG:lin1605_1 KEGG:ns NR:ns ## COG: lin1605_1 COG0469 # Protein_GI_number: 16800673 # Func_class: G Carbohydrate transport and metabolism # Function: Pyruvate kinase # Organism: Listeria innocua # 1 475 1 475 475 683 77.0 0 MKKTKIVCTIGPASESVDMLVNLINAGMNVCRLNFSHGDYEEHGARIKNIREAVKITGKR VAILLDTKGPEIRTNDMENGAITMKIGDSVRISMTEVLGTNEKFSITYPELINDVNVGSH ILLDDGLIDLEVTDIDRDANEIVTVVKNEGVLKNKKGVNVPGVSVNLPGITEKDANDIRF GIGQGIDFIAASFVRRASDVLEITKILEEENATHIQIIPKIENQEGIDNIDEILKVSDGL MVARGDMGVEIPTEDVPVVQKALIKKCNALGKPVITATQMLDSMQRNPRPTRAEANDVAN AIYDGTDAVMLSGETAAGDYPLEAVQTMARIAVRTEETLVNQDSFALKLYSKTDMTEAIG QSVGHTARNLGIQTIVAATESGHTARMISKYRPKAHIVAITFSEQKARSLSLSWGVYATV ADKPSSTDEMFNLASKVSQEEGYASEGDLIIITAGVPVGEKGTTNLMKIQMIGSKLVQGQ GVGEEAIIAKAVVAGTAEEAVAKATEGAILVTKTTDKEYMPAIEKASALVVEEGGLTSHA AVVAIAQNIPVIVGAADATSLINNDEVITVDPRRGIVYRGATTAI >gi|307679012|gb|GL456785.1| GENE 198 204644 - 205213 630 189 aa, chain + ## HITS:1 COG:L39365 KEGG:ns NR:ns ## COG: L39365 COG1399 # Protein_GI_number: 15673577 # Func_class: R General function prediction only # Function: Predicted metal-binding, possibly nucleic acid-binding protein # Organism: Lactococcus lactis # 1 170 1 167 176 115 42.0 5e-26 MKWSLLELNKYKEEPLVFSETLHLKEELLQRDDTLLDVSPIKVEGLLAVNKSEYLLHYTI QVTVTVPSSRSLEPVALPMQITVDEVFMTKEQMDTRDERFAAEEIILLDKPTIDLDESVE DNILLSIPIQVLTEEEQNSQEMPSGNDWEVISEEAYLESKQKAAEQTVDPRLAKLSELLS DNAEEEDNS >gi|307679012|gb|GL456785.1| GENE 199 205270 - 205449 322 59 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375627|ref|NP_814781.1| 50S ribosomal protein L32 [Enterococcus faecalis V583] # 1 59 1 59 59 128 100 2e-28 MAVPARRTSKAKKAKRRTHYKLTIKGLNACSNCGEMKKSHHVCPACGHYDGKDVMSKEA >gi|307679012|gb|GL456785.1| GENE 200 205654 - 207075 1748 473 aa, chain + ## HITS:1 COG:SP0375 KEGG:ns NR:ns ## COG: SP0375 COG0362 # Protein_GI_number: 15900298 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconate dehydrogenase # Organism: Streptococcus pneumoniae TIGR4 # 1 473 1 474 474 790 80.0 0 MTKQQFGVVGMAVMGKNLALNIESRGYTVALYNRTGSKTTEVVEEHPDKNFQATYSIEEF VNAIEKPRRIMLMVKAGPATDATIQELLPHLDKGDILIDGGNTFFKDTMRRNEELANSGI NFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILEKISAKAEDGEPCVTYIGPNGAGH YVKMVHNGIEYGDMQLIAESYDLMKQILGLSVDEMAEIFKEWNEGELDSYLIEITADILT RKDDEGTDQPIVDVILDAAGNKGTGKWTSQSALDLGVPLPLITESVFARFISAYKEERVK ASGILSKPAAFNFAGDKKELIEKIREALYFSKLMSYAQGFAQLRAASEEYGWDLPFGEIA KIWRAGCIIRAQFLQKITDAYEKNPALENLLLDEYFVEITKKYQQAVREVVAIAVQAGVP VPTFSSAIAYYDSYRSDRLPANLIQAQRDYFGAHTYERTDKEGIYHYSWYNEE >gi|307679012|gb|GL456785.1| GENE 201 207233 - 207919 896 228 aa, chain + ## HITS:1 COG:lin1414 KEGG:ns NR:ns ## COG: lin1414 COG0745 # Protein_GI_number: 16800482 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 1 228 1 226 226 307 80.0 9e-84 MSNILIIEDEKNLARFVELELKHEGYTTEVHYNGRTGLEAALNNEWDAILLDLMLPELNG LEVCRRVRQVKNTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRID IEGDKNVAKQTTITYRDLTIEKENRVVRRNSEMIELTKREYELLLTLMENVNVVLARDVL LNKVWGYETEVETNVVDVYIRYLRNKIDVPGEESYIQTVRGTGYVMRS >gi|307679012|gb|GL456785.1| GENE 202 207930 - 209438 1271 502 aa, chain + ## HITS:1 COG:L0130 KEGG:ns NR:ns ## COG: L0130 COG0642 # Protein_GI_number: 15673575 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Lactococcus lactis # 2 491 11 488 491 332 39.0 1e-90 MKRTIKKELEGPSLTIKWAFASSFFIFVVFTIFAVITYKSSVSLIVAKEKENVEATIAEV TNRLANANENLTVTDVFDYLKTPSERDENYYNKHTAVEGSFMEMDSFISELGQPELYLSV YDTNQKLVFKTQNEYDKLLQLDRQLPVVRTVFDKTGFYSVEPIFSKETREKIGYIQAFYE LSSFYEIRNHLLLTLVVLEVISLIVSSVLGFILSSYFLKPLKVLRDTMDTIRKDPQSDVH MPEINTRDELADISEIFNEMLDRMRRYIEQQEQFVEDVSHELRTPVAIMEGHLNLLNRWG KDDPEILDESLKASLQEISRMKSLVQEMLDLSRAEQVDTQYANERTDAKQVVYQVFNNFQ LVYPEFHITLDDDLPTEVELKIYRNHFEQLLIILLDNAIKYSTDRKEVHISISRTMNEFE IAVQDFGEGITEEDLEKIFDRFYRVDKARARNKGGNGLGLSIAKQLVENYKGRIDAESVL HQGTIFRIFIPIAGIKEESNVQ Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:15:15 2011 Seq name: gi|307679011|gb|GL456786.1| Enterococcus faecalis TX0312 genomic scaffold Scfld92, whole genome shotgun sequence Length of sequence - 41289 bp Number of predicted genes - 41, with homology - 40 Number of transcription units - 25, operones - 11 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 3414 3775 ## EF3023 polysaccharide lyase family protein 8 2 1 Op 2 . - CDS 3483 - 3572 101 ## - Term 3793 - 3839 6.1 3 2 Tu 1 . - CDS 3997 - 4476 550 ## COG1576 Uncharacterized conserved protein - Prom 4505 - 4564 4.2 + Prom 4782 - 4841 8.6 4 3 Tu 1 . + CDS 4877 - 6175 1556 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - Term 6174 - 6211 8.0 5 4 Tu 1 . - CDS 6241 - 6861 845 ## COG0073 EMAP domain - Prom 6981 - 7040 4.3 - Term 6991 - 7033 -1.0 6 5 Tu 1 . - CDS 7072 - 7527 691 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins - Term 7552 - 7595 -0.9 7 6 Op 1 1/0.333 - CDS 7675 - 7989 509 ## COG0526 Thiol-disulfide isomerase and thioredoxins 8 6 Op 2 . - CDS 8001 - 9077 1207 ## COG1363 Cellulase M and related proteins - Prom 9193 - 9252 5.6 + Prom 9273 - 9332 8.6 9 7 Tu 1 . + CDS 9384 - 9725 486 ## COG5584 Predicted small secreted protein + Term 9729 - 9778 13.4 + Prom 9893 - 9952 7.6 10 8 Tu 1 . + CDS 10044 - 11699 1692 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Term 11717 - 11778 16.7 - Term 11710 - 11761 14.1 11 9 Op 1 13/0.000 - CDS 11766 - 12584 931 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 12 9 Op 2 . - CDS 12574 - 13347 1036 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 13 9 Op 3 . - CDS 13372 - 14514 1441 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase 14 9 Op 4 9/0.000 - CDS 14560 - 15036 599 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 15 9 Op 5 . - CDS 15063 - 15500 483 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA - Prom 15564 - 15623 1.8 16 10 Op 1 . - CDS 15647 - 16741 746 ## EF3047 hypothetical protein - Term 16754 - 16811 13.0 17 10 Op 2 . - CDS 16828 - 17616 937 ## COG3394 Uncharacterized protein conserved in bacteria - Prom 17662 - 17721 2.8 + Prom 17673 - 17732 10.4 18 11 Tu 1 . + CDS 17788 - 18540 641 ## COG1737 Transcriptional regulators + Term 18555 - 18602 10.1 - Term 18543 - 18590 10.1 19 12 Op 1 . - CDS 18609 - 19160 443 ## PROTEIN SUPPORTED gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) - Term 19178 - 19225 3.2 20 12 Op 2 . - CDS 19237 - 20004 681 ## EF3051 hypothetical protein - Prom 20064 - 20123 5.5 + Prom 20121 - 20180 8.1 21 13 Tu 1 . + CDS 20230 - 20592 389 ## EF3052 hypothetical protein + Term 20609 - 20680 16.6 - Term 20608 - 20657 10.5 22 14 Op 1 . - CDS 20712 - 21287 556 ## COG3859 Predicted membrane protein - Prom 21329 - 21388 5.4 23 14 Op 2 . - CDS 21450 - 22076 741 ## COG3212 Predicted membrane protein - Prom 22100 - 22159 7.5 - Term 22133 - 22180 6.1 24 15 Tu 1 . - CDS 22181 - 22966 749 ## EF3055 hypothetical protein - Prom 23043 - 23102 7.3 + Prom 23027 - 23086 7.2 25 16 Tu 1 . + CDS 23200 - 23934 739 ## COG3764 Sortase (surface protein transpeptidase) + Term 23935 - 23992 13.1 - Term 23931 - 23972 7.5 26 17 Op 1 . - CDS 23982 - 24212 372 ## EF3057 hypothetical protein 27 17 Op 2 . - CDS 24301 - 24771 683 ## COG0394 Protein-tyrosine-phosphatase 28 17 Op 3 . - CDS 24812 - 25381 519 ## COG1309 Transcriptional regulator - Prom 25470 - 25529 8.2 - Term 25475 - 25538 13.7 29 18 Tu 1 . - CDS 25559 - 27004 1802 ## COG3883 Uncharacterized protein conserved in bacteria - Prom 27236 - 27295 14.3 - Term 27241 - 27286 8.2 30 19 Op 1 19/0.000 - CDS 27309 - 27818 452 ## COG2891 Cell shape-determining protein 31 19 Op 2 . - CDS 27815 - 28675 1132 ## COG1792 Cell shape-determining protein - Prom 28706 - 28765 6.4 - Term 28795 - 28844 6.4 32 20 Op 1 26/0.000 - CDS 28857 - 30971 1685 ## PROTEIN SUPPORTED gi|62291006|ref|YP_222799.1| polynucleotide phosphorylase/polyadenylase - Prom 31023 - 31082 3.1 - Term 31102 - 31150 7.1 33 20 Op 2 . - CDS 31158 - 31463 511 ## PROTEIN SUPPORTED gi|227517326|ref|ZP_03947375.1| ribosomal protein S15 - Prom 31657 - 31716 5.8 + Prom 31618 - 31677 8.5 34 21 Tu 1 . + CDS 31707 - 32270 879 ## COG0242 N-formylmethionyl-tRNA deformylase + Term 32280 - 32323 12.4 - Term 32266 - 32311 12.0 35 22 Op 1 . - CDS 32317 - 33093 740 ## COG0561 Predicted hydrolases of the HAD superfamily 36 22 Op 2 . - CDS 33103 - 33756 659 ## COG4912 Predicted DNA alkylation repair enzyme - Term 33770 - 33815 9.2 37 22 Op 3 . - CDS 33828 - 34631 731 ## COG2116 Formate/nitrite family of transporters + Prom 34719 - 34778 8.5 38 23 Tu 1 . + CDS 34955 - 35566 1045 ## PROTEIN SUPPORTED gi|29377528|ref|NP_816682.1| 30S ribosomal protein S4 + Term 35609 - 35642 2.1 + Prom 35622 - 35681 8.1 39 24 Op 1 . + CDS 35714 - 36274 168 ## PROTEIN SUPPORTED gi|163764517|ref|ZP_02171573.1| ribosomal protein L32 40 24 Op 2 . + CDS 36336 - 36872 661 ## COG0681 Signal peptidase I + Term 36875 - 36933 22.2 - Term 36863 - 36921 18.2 41 25 Tu 1 . - CDS 36927 - 40829 3429 ## EF3074 hypothetical protein - Prom 41072 - 41131 6.9 Predicted protein(s) >gi|307679011|gb|GL456786.1| GENE 1 3 - 3414 3775 1137 aa, chain - ## HITS:1 COG:no KEGG:EF3023 NR:ns ## KEGG: EF3023 # Name: not_defined # Def: polysaccharide lyase family protein 8 # Organism: E.faecalis # Pathway: not_defined # 1 1137 1 1137 1372 2128 99.0 0 MIKKIIVVVAFMLTGFSLTAMSASAEEITDLFLQKEVTYSGVEGGKIGENWKYPQFVGEK AVDGDETTRWSADKQDEQWLIVDLGEVKNIGELVLQLHAESPVYEILVSTDGESYQSIFK EENGQGGQPTKKYIDGNNVQARFVKYQQMKMWQHTNKQFYSSSIISFEAYEKKRLPEAIK LLTENLTISEKRKQQLAFEVSPAGVDITEDQIEWSSSDPTIVTVDQTGNLTAVKSGEAKV TVKIKGTEISDTIPVTVVAENKQYAEMRAKWKMRLLGTTQYDNDADVQQYRAQIATESLA LWQTLNQAVDRGYLWERKPSDTVSADYTTQFTNIKKLALGYYEPSSELFEKSEVYDAIVK GIEFMIDTKKYNGTYYTGNWWDWQIGSAQPLTDTLILLHDDLLNTDAEKLNKFTAPLMLY AKDPNIQWPIYRATGANLTDISITVLGTGLLLEDNQRLVQVQEAVPSVLKSVSSGDGLYP DGSLIQHGYFPYNGSYGNELLKGFGRIQTILQGSDWEMNDPNISNLFNVVDKGYLQLMVN GKMPSMVSGRSISRAPETNPFTTEFESGKETIANLTLIAKFAPENLRNDIYTSIQTWLQQ SGSYYHFFKKPRDFEALIDLKNVVNSASPAQATPMQSLNVYGSMDRVLQKNNEYAVGISM YSQRVGNYEFGNTENKKGWHTADGMLYLYNQDFAQFDEGYWATIDPYRLPGTTVDTRELA NGAYTGKRSPQSWVGGSNNGQVASIGMFLDKSNEGMNLVAKKSWFLLDGQIINLGSGITG TTDASIETILDNRMIHPQEVKLNQGSDKDNSWISLSAANPLNNIGYVFPNSMNTLDVQIE ERSGRYGDINEYFVNDKTYTNTFAKISKNYGKTVENGTYEYLTVVGKTNEEIAALSKNKG YTVLENTANLQAIEAGNYVMMNTWNNDQEIAGLYAYDPMSVISEKIDNGVYRLTLANPLQ NNASVSIEFDKGILEVVAADPEISVDQNIITLNSAGLNGSSRSITVKTTPEVTKEALEKL IQEQKEHQEKDYTASSWKVYSEALKQAQTVVDQATATQAEVDQAEAKLRSAVKQLVKVPT KEVDKTNLLKIIKENEEHQEKDYTASSWKAYSEALKQAQTVADQTTATQAEVDQAEA >gi|307679011|gb|GL456786.1| GENE 2 3483 - 3572 101 29 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKSLSEVITLGCLFMPNFYIEYLVEEEVD >gi|307679011|gb|GL456786.1| GENE 3 3997 - 4476 550 159 aa, chain - ## HITS:1 COG:lin0321 KEGG:ns NR:ns ## COG: lin0321 COG1576 # Protein_GI_number: 16799398 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 159 1 159 159 219 71.0 2e-57 MKIKLVTVGKLKEKYLIQGINEYLKRLNSYAKMEIIEVPDEKAPEKLSDAEMLQVKEKEG QRILGKINDNEYVFVLAINGKQLSSEEFSKEIEQLGISGKSNLTFVIGGSLGLSDSVLQR SNQQISFGRLTYPHQLMRLVLVEQIYRGFRIMKGEPYHK >gi|307679011|gb|GL456786.1| GENE 4 4877 - 6175 1556 432 aa, chain + ## HITS:1 COG:SPy2216 KEGG:ns NR:ns ## COG: SPy2216 COG0265 # Protein_GI_number: 15675945 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Streptococcus pyogenes M1 GAS # 53 425 35 405 407 324 55.0 3e-88 MQRKDVTPNSDKKSLLQKFGIGLAGGLLGGALILGGAYSGIIPTPNGGNNAATTTSTNHG DTKVSNVSYNVSSDVTKAVKKVQNSVVSVINMQSASNNSSADDPFGGLFGGNEGTQDSSG NNGNDLEAASEGSGVIYKKDGKTAYVVTNNHVVDKAQGLEVVLSDGTKVKGELVGTDAYT DLAVIKISSDKVDQVAEFGNSSKITVGEPAIAIGSPLGSDYANSVTQGIISSVNRNITNK NESGETININAIQTDAAINPGNSGGPLINIEGQVIGINSVKIVQSTSQVSVEGMGFAIPS NDVVNIINQLEKDGKVTRPALGITMSDLTGISSQQQEQILKIPASVKTGVVVRGVEAATP AEKAGLEKYDVITKVDGQDVSSTTDLQSALYKKKVGDKMEVTYYRGSKEMKATIDLTIDK SALTQQNNRSNQ >gi|307679011|gb|GL456786.1| GENE 5 6241 - 6861 845 206 aa, chain - ## HITS:1 COG:SP1910 KEGG:ns NR:ns ## COG: SP1910 COG0073 # Protein_GI_number: 15901735 # Func_class: R General function prediction only # Function: EMAP domain # Organism: Streptococcus pneumoniae TIGR4 # 1 202 1 200 208 204 54.0 8e-53 MIFAYNKEHVGDVLLVIVADDQGAENQVKRVGDVARVSLVEAPETVVAWNIFNASALLGD INGTGQVTLTDEQIEKVNTAIKDAGFSEILEKDDTPKIVVGFVKSCKKHPDSDHLSITQT EVDNGEILQIVCGAPNIKAGQKVVVAKPGAMMPDGLMIWPGVLRGEESFGMICSAKELRL PNAPAKKGILELPFDAEVGSAFAVGE >gi|307679011|gb|GL456786.1| GENE 6 7072 - 7527 691 151 aa, chain - ## HITS:1 COG:SA1532 KEGG:ns NR:ns ## COG: SA1532 COG0589 # Protein_GI_number: 15927287 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Staphylococcus aureus N315 # 6 150 4 146 166 125 44.0 2e-29 MEEQMYKNILVGVDGSDQANLAYERAIEVARRNGSRVIVANILENQVYTMMGYSTLNDQL IDQETAAAEELMADCKKYAESVDFHNVETVTMFGSPKEVMSHELPEKYNVDLIMVGQSGL NAVERVVMGSVSSYIIRQAPCDVLIVHSEEK >gi|307679011|gb|GL456786.1| GENE 7 7675 - 7989 509 104 aa, chain - ## HITS:1 COG:SP1911 KEGG:ns NR:ns ## COG: SP1911 COG0526 # Protein_GI_number: 15901736 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Streptococcus pneumoniae TIGR4 # 1 103 1 104 105 134 59.0 3e-32 MIYPNSLEELATYVEKGKNVFFFTADWCGDCRFIKPVMPEIEEAFPAFQFIEVDRDQFID VAAEWNIFGIPSFVVIENGQELGRLVNKDRKTKEEISAFLTSLG >gi|307679011|gb|GL456786.1| GENE 8 8001 - 9077 1207 358 aa, chain - ## HITS:1 COG:SPy0115 KEGG:ns NR:ns ## COG: SPy0115 COG1363 # Protein_GI_number: 15674335 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Streptococcus pyogenes M1 GAS # 6 354 5 352 355 417 56.0 1e-116 MEEKTFQRIKELTELQGTSGFEDDIRAYMKEHITPLVDDVQYDGLGGIFGIKRSKVEAAP RVMVAAHMDEVGFMLTQINDNGLFQVVPLGGWNPYVVSAQRFTLKTSKGNYPCISSSIPP HLLRGTSGQKQLEVSDVLFDAGFSSKEEAESFGVRPGDSIVPQTETIKTANGKNIISKSW DNRYGCTLVLDALETLQNEELGHTLIAGANVQEEVGLRGSKPSVHKFNPDIFFAVDCSAA DDIHTKKGTYGHLGEGTLLRIFDPGLITLPRLREYLLDTAATHNIPYQYFVSKGGTDAGA AHTTNNGVPSTVIGVCGRYIHTHQTMFSIADYEAAREMLLQALRGLDKSTVNTIVYGK >gi|307679011|gb|GL456786.1| GENE 9 9384 - 9725 486 113 aa, chain + ## HITS:1 COG:lin1653 KEGG:ns NR:ns ## COG: lin1653 COG5584 # Protein_GI_number: 16800721 # Func_class: S Function unknown # Function: Predicted small secreted protein # Organism: Listeria innocua # 30 108 19 100 103 85 54.0 2e-17 MNEENELTYFKGGLALGVGLGLVGGIASTLFYHKKKTISADLVLENVKAAFLKEGPIEGS WIEFEKKPLRKFAIHSKTYTGGICRIEDDGIVQYEFTADAYTGTVIDIQRLKD >gi|307679011|gb|GL456786.1| GENE 10 10044 - 11699 1692 551 aa, chain + ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 20 549 22 556 559 410 42.0 1e-114 MKKSVLFTSLLVLSSLALAACGGGSDDKGASNGGSDNQVYTMVESQEMPSADPSLATDEV SFTTLNNVYEGIYRLDKDNKPAPAGAAEKATVSEDGLVYKVKLREESKWSDGKPVTAADY VYGWQRTVDPATASEYAYMFEPVKNAEKISKGELPKEELGIKAINDHELEITLETATPYF DDLLAFPSFLPQRQDIVERFGKDYTKSSDKAVYNGPFTLTEFDGPGTDTKWSLTKNEEYW DKETVKLDKVAINVVKEAPTALNLYETGEVDDTYLSGELAQQMQNSPDLVQLKAASSFYL EMNQADEKSPLTNANLRRAMSYAIDRDSLAKNILANGSLPSQGFVPVDVAKSPKTGEDFV KEAGSDKLVKYDKKKAVEYWNKAKQELGVSNLTVDLMVDDSEGAKKMGEYLQGSLSDTLE GLKVTVTPVPMAVRLDRTLKGDFQIAVRGWSADYSDPINFLDLLESSTSNNRGRYSNPEY DKFIAASKTTDVNDPEKRWEDLINAEKTVIADMGVVPIYQKAESHLRAPNVKEIIYHPTG AKYDFKWAYKE >gi|307679011|gb|GL456786.1| GENE 11 11766 - 12584 931 272 aa, chain - ## HITS:1 COG:ECs4013 KEGG:ns NR:ns ## COG: ECs4013 COG3716 # Protein_GI_number: 15833267 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Escherichia coli O157:H7 # 3 268 23 288 292 258 47.0 1e-68 MASEETYNDTISEKVITKKELKKIMFRSYLLQSSFNYERMQAGGWTYSLIPGLKKIHRDK EDLALSLENHLQFMNTNPQLVTFMHGVIIAMEESKESPKSIQAIKTALMGPLGGIGDALF YLTVLPIAAAIGSQLSLEGNILGPIVFLLLFNIPYMAAKIGLINLGYKMGVKAISVLSES TKKLSRSATIVGISVVGALIPKSVQLTTTFVFRLKDTKLDLQTQLFDTIMPNLLPLVFTL FCFIMLKKGRTPIALIIFTVIFGLLGSLIGII >gi|307679011|gb|GL456786.1| GENE 12 12574 - 13347 1036 257 aa, chain - ## HITS:1 COG:ECs4012 KEGG:ns NR:ns ## COG: ECs4012 COG3715 # Protein_GI_number: 15833266 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Escherichia coli O157:H7 # 2 218 5 221 259 213 54.0 3e-55 MLVQAILVGIWAGIAGVDKLVLQTHIHRPIVTGLIVGLILGDVNTGLITGATLELVWIGA VAIGGAQPPNVVIGGVIGTALAIITKSDPQVTVGLAVPFAVAAQALITLLYTAMSPIMHK FDAYAKKADTRGIERLSSFVPIVLFICYFFVVFLCIFFGADKASSFISILPEWSIHGLSV AGGMMPAVGFAMLLKTMWETSYVPFFIFGFVMAAYLGLDTLAVAGLAVAIALYEFYAQRN NTVTASNNNGGFEEDGI >gi|307679011|gb|GL456786.1| GENE 13 13372 - 14514 1441 380 aa, chain - ## HITS:1 COG:L173068 KEGG:ns NR:ns ## COG: L173068 COG1820 # Protein_GI_number: 15673317 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Lactococcus lactis # 40 379 44 381 382 206 34.0 7e-53 MIIQSKNVWINEQFQPAQVEVSEQRIVAILPYNEKAVDKEYGAKRILPGFIDIHDHGWHG GDANHEFIKEWQAYLPEEGITAFLPTTSTTFPKDLEHSFEVIGSFIEEDQGTNGAQILGI HAEGPMISEEFRGSHNPELLVKPSVETFKKWQELAKGHIKLMTLAPENDVENDLTTYCHE HDVVISIGHTAATYEQAMAAVEAGAKSFTHTFNGMEDISHRKPTAVVAALDSEETFAEII ADGVHVDYSLVRVLAKLKGKDYLIAVTDSIWAKGCQPGVYPKPEKGIEMVIDEQNVVRLA NGKLAGSTNHLNNMVRNLVEKALLPEVIAINSVTKNPARLLNVNESMGEIKLGLLGNFTI IDEKYEVLETLVNGETVYKK >gi|307679011|gb|GL456786.1| GENE 14 14560 - 15036 599 158 aa, chain - ## HITS:1 COG:agaV KEGG:ns NR:ns ## COG: agaV COG3444 # Protein_GI_number: 16131025 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Escherichia coli K12 # 1 157 13 169 169 157 48.0 6e-39 MPNILLTRIDNRLIHGQVATQWNGSLGANLILVANDAISEDTMRQQLLNMAAPAEVQTRF FSIKKTIEVIHKASERQKIFLLVDNPVDALRLVEGGVPIEKLNIGNMHMEEGKKQVATAV AVNKTDVDAFKKLQELGVKLSIQRVPSTPEESLDALFS >gi|307679011|gb|GL456786.1| GENE 15 15063 - 15500 483 145 aa, chain - ## HITS:1 COG:ECs4014 KEGG:ns NR:ns ## COG: ECs4014 COG2893 # Protein_GI_number: 15833268 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Escherichia coli O157:H7 # 1 100 1 99 144 83 43.0 2e-16 MIGLILTGHGVFSTGMHQSVSMIAGEQPNIQAVPFFNDTGLDVLESNIRKAVDSMLETCP AVVILTDLLGGTPFRISMTVASNYPNVEVLAGTNLPMVLEGLALRTISTNVEDFVSMVTD SARDGIVHKKLEQPQANTQEEADGI >gi|307679011|gb|GL456786.1| GENE 16 15647 - 16741 746 364 aa, chain - ## HITS:1 COG:no KEGG:EF3047 NR:ns ## KEGG: EF3047 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 364 1 364 364 606 98.0 1e-172 MSKEQPINLNISDFLKVFAVASVILQTVLSYVLTHSPQTEAMNSIGSFYRMSKYSAPMFI FAIIYNMVLKSQAESYLEFLKEKFYELVLPYVVWSSLYLYAFPSLQQRMPYETPLGFLGK VLSGDGAAHLWYAVMMLQFQLFMPYFIWLATRITKNKKVILPIVFFTIGAHILWCFWYQK MIFPYAETSLWYLIDRSGLSYLIYGIFGVIAAKYQGGIFTFLKKTRVVLFLLFLFIFWQA VQGNLFDGTQMTPNDLPYLDPLQSAYSLLIIGLVFYLGTQGIAKKIRLLPMVKWIATYAY RSYLANVFVFQLVLKLVHPFLTNQPVSLVILVLYMGTFVGSFGLTVVIEHFFKSIFKLGR LVSV >gi|307679011|gb|GL456786.1| GENE 17 16828 - 17616 937 262 aa, chain - ## HITS:1 COG:chbG KEGG:ns NR:ns ## COG: chbG COG3394 # Protein_GI_number: 16129687 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 6 260 5 249 249 143 36.0 4e-34 MSNKKLIINADDFGYTPAVTQGIIEAHKRGVVTSTTALPTSPYFLEAMESARISAPTLAI GVHLTLTLNQAKPILPREMVPSLVDEAGYFWHQSIFEEKVNLEEVYNEWDAQIISFMKSG RRPDHIDSHHNVHGKNEKLLGVALALARKYQLPLRNASRSIETKDYLELYQDVRTPDEML YQFYDKAISTETILQLLDMVVCSEGEVFEINCHPAFIDTILQNQSGYCMPRIREVEILTS QEVKEAIEERGILLANYESLAM >gi|307679011|gb|GL456786.1| GENE 18 17788 - 18540 641 250 aa, chain + ## HITS:1 COG:lin0527 KEGG:ns NR:ns ## COG: lin0527 COG1737 # Protein_GI_number: 16799602 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 248 1 247 250 205 45.0 5e-53 MLFLTYDPQLNPTELEIYKYISHNIEKVPYMTIRELADEIHFSKTAIWRFCQKFECEGYT DFKFKLKNYLSERKKTAQPKSLDETMLIHFLQRSSEELLEGRIVQAAELLAKKEFVLFIG EGTSKVLAEFGEIYFSSIYNLSASVSHLFSHPVSKLSEETAKKVGVIALSVSGETQKVRQ NIDYFIEMGIDVIAITNSEKSTIAQLSTVTIPYYITTEKSSIADVTSQLPALFLIEKLAK TVSTMLNECP >gi|307679011|gb|GL456786.1| GENE 19 18609 - 19160 443 183 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) [Campylobacter concisus 13826] # 1 180 1 179 185 175 46 5e-43 MERCTWATNTTEEMQAYHDDEWGRPVHEEQQLFELLTLESMQAGLSWAIILNKRETLRAA YDAFDYRKIAQYDEKKILALLANPGVIRHRLKIQATITNAQVFQEVQAEFGSFDRYLWNF VDQQPIVNHWQHPEEVPASTELSQQISRALKKRGFKFLGATTVYSFLQAAGLVNDHLETC QYK >gi|307679011|gb|GL456786.1| GENE 20 19237 - 20004 681 255 aa, chain - ## HITS:1 COG:no KEGG:EF3051 NR:ns ## KEGG: EF3051 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 255 1 255 255 509 99.0 1e-143 MSKKPSGYQKKVLTVLLVSFGFGGLLAQFSPMKSGGFSSWFDDSYVKASAESSKTKEPAP VKIEKKVKPLSYGQQVNQEIEKKQYNGHLDLPLELQTDAKWKDTAYGFGNVDKPNTIEIN GCAIVSLAMVGSYMDHQEVTPLDVLAWAKNDFFMEGQGTAWSIFSAYAEMKGYNCQEIGD IETVAAFLKEGHPVIISVKPGYFTTTGHIMVMSGVDEKGDFWINDPNDSEEKGHSKRTFT AEEVMNEALNFWAFY >gi|307679011|gb|GL456786.1| GENE 21 20230 - 20592 389 120 aa, chain + ## HITS:1 COG:no KEGG:EF3052 NR:ns ## KEGG: EF3052 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 120 1 120 120 180 100.0 2e-44 MDQHKATIKSISKLITLSSQHFFSAFLEDSQDQKNKEKERSALLQELQVAAAQKSLVVLQ LKEVPTAHKFETVIGWIVSKNISDNIVVRLQTDEQQLRMIPVASVMKVSTLANRHQRQIH >gi|307679011|gb|GL456786.1| GENE 22 20712 - 21287 556 191 aa, chain - ## HITS:1 COG:SPy0600 KEGG:ns NR:ns ## COG: SPy0600 COG3859 # Protein_GI_number: 15674683 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 1 190 1 186 187 116 38.0 2e-26 MARKMDLRIWVEGTVVAAMAMALSFLPIEFANSGLDLSLGMVPLVLYSFRRGLLPGVAAG FVWGMLNIILGTAMKNFLSVPQIIFEYPFAFAFGGMGGVFARKIQLYFQANRLKSAIRTI ILGSVVAVFARWFWHFWAGVLVWGMYAPEGMSPYLYSFVLNGTSTVVNCLYVSLVLGLLA KVAPQLFVPKK >gi|307679011|gb|GL456786.1| GENE 23 21450 - 22076 741 208 aa, chain - ## HITS:1 COG:lin0040 KEGG:ns NR:ns ## COG: lin0040 COG3212 # Protein_GI_number: 16799119 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 64 208 60 203 203 89 37.0 5e-18 MKKILYGSMTGLALFLVAGCTSKTPTAVSSTNEQKETVISTIETSSSVQQEATTTSEKTS AVAVSLEKVTTAFEKKYPEAKITSLQLDTDFGRYFYEIEGVDQQKEYQVEVNAETGEFTK EKVETLDADEQNGVKMQEEALDLTNIISREQATTLAEKEAKVGQATDWKLEKELGITYWE VKVKEGQQKIEVKIDAHSGKILTTERDD >gi|307679011|gb|GL456786.1| GENE 24 22181 - 22966 749 261 aa, chain - ## HITS:1 COG:no KEGG:EF3055 NR:ns ## KEGG: EF3055 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 261 1 261 261 499 100.0 1e-140 MLDLIYVHIDVTSNAVLSKGITHSDFVRSIVHHPQNLLLLDPSAEAGEYDMHSGLKIIRG EESVNRYFQSLQRRWMTEEIKWIDFSDVTMLKELTPLEISELLYFGHMKNSLHSPFFYKL QNDFVFFEFADQMTRVYYRYIDEFYRIFADKITRVVLEKVNQKKAFFKRNTPVEKLSPEL LKNMKGILQEGVIFCFQQTEVDKEEYRIPIYLVEDSLSKMKNTSYQKEEILATLVYNSEK RIWHIEQENDFGEIFMLAHEG >gi|307679011|gb|GL456786.1| GENE 25 23200 - 23934 739 244 aa, chain + ## HITS:1 COG:L125196 KEGG:ns NR:ns ## COG: L125196 COG3764 # Protein_GI_number: 15673095 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Lactococcus lactis # 4 242 44 287 287 216 45.0 2e-56 MRPKEKKRGKNWLINSLLVLLFIIGLALIFNNQIRSWVVQQNSRSYAVSKLKPADVKKNM ARETTFDFDSVESLSTEAVMKAQFENKNLPVIGAIAIPSVEINLPIFKGLSNVALLTGAG TMKEDQVMGKNNYALASHRTEDGVSLFSPLERTKKDELIYITDLSTVYTYKITSVEKIEP TRVELIDDVPGQNMITLITCGDLQATTRIAVQGTLAATTPIKDANDDMLKAFQLEQKTLA DWVA >gi|307679011|gb|GL456786.1| GENE 26 23982 - 24212 372 76 aa, chain - ## HITS:1 COG:no KEGG:EF3057 NR:ns ## KEGG: EF3057 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 76 16 91 91 108 97.0 5e-23 MNSSYLSYVFELSLYYLLLIMSLPLVYAVTYHLSFSSMYTSEWLMISVFLSPLVLLFAGI RYGFARLKQQERQAMK >gi|307679011|gb|GL456786.1| GENE 27 24301 - 24771 683 156 aa, chain - ## HITS:1 COG:lin0937 KEGG:ns NR:ns ## COG: lin0937 COG0394 # Protein_GI_number: 16800007 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Listeria innocua # 1 150 1 149 152 171 52.0 4e-43 MVTVLFVCLGNICRSPMAEAIFRQKVQQAGLESTIQVFSAATSHWEVGSQPHKGTRKILE QQGISYQGMRATQIQPSDFKKYDYIIGMDANNVADLKALAPQEEQRRIHLFMEVVAGKET MDVPDPYYTGDFEETYRLVEAGTSEWLKKIKAQLKD >gi|307679011|gb|GL456786.1| GENE 28 24812 - 25381 519 189 aa, chain - ## HITS:1 COG:lin0482 KEGG:ns NR:ns ## COG: lin0482 COG1309 # Protein_GI_number: 16799557 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 7 185 7 185 186 196 54.0 2e-50 MSGTHDTKQAIASALIELCEQKDFRKISVQDITKKVGLNRQTFYYHFTDKYDLLRWIYRH DALIYLETDICLENWEEQALKLLKAIKEKSHFYYTTVTSDSEVLLNVFSASTNRLFISLF EQVDVENHLTDKDKQFYANFFSYGCSGVLTKWILEEYPQTPLEMATQLFRLAKDTEFMAY HLYEQEANE >gi|307679011|gb|GL456786.1| GENE 29 25559 - 27004 1802 481 aa, chain - ## HITS:1 COG:SP2216_1 KEGG:ns NR:ns ## COG: SP2216_1 COG3883 # Protein_GI_number: 15902020 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 274 1 270 270 93 31.0 8e-19 MKKSVLSALMVCSITLTSVALPSAAFADEYDTKIQQQDQKINALTSQMSDAEAKVAAIEN DMVETAKQIDTLTAKKNKLSSEVSKLYSEISDLNVRIQKREVQMTKQARDVQVNGQSDSI IDAVLDADSVADAIGRVQAVSTMMSANNELLEQQKEDKATVEKKTKNVEKQIAELEAATK ELNDKTESLKTLKIQQEVAKNDLEAQRSEEQGKKDGFIKQKKEAEKRLAEEQARQRAAAK KAEEQAAAQAQAAAQKAAAEQAQATKAANEAAASAAEEKAATPVVESSTTTESTTTQETT TSSTETESVVTTPAAAPEKEKEVPVTNPTTPEKGNEAKPGNGGVTSGKQAAINAALADVG NSYATGWNQPGECLVSVRRWLAAGGINFGYGGPNSGYVASGATQVSWSNVQPGDVVQYES AYSPDSWIGGVHTVLVTGVSGGSVQIVEANNPGGSGYVSSNSNWSPAPPAGFRAVVWRFP G >gi|307679011|gb|GL456786.1| GENE 30 27309 - 27818 452 169 aa, chain - ## HITS:1 COG:L98132 KEGG:ns NR:ns ## COG: L98132 COG2891 # Protein_GI_number: 15674212 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Lactococcus lactis # 7 169 6 168 175 82 35.0 4e-16 MIRKEYLKYVTPILLFFLMLIDAHLTKSFETWTSNVYFASSHLLLLAFMFAVPNFSKRYL LITSLILGFICDSYYIGIIGIYTVALTLSVMLMYTFKEVIQTNLLTGFFGIVIFTTLYEL IAVLIQVAFHLADVSPILFITRVLGPTLLLNMVWYVILSYPLKKLFSVK >gi|307679011|gb|GL456786.1| GENE 31 27815 - 28675 1132 286 aa, chain - ## HITS:1 COG:L98749 KEGG:ns NR:ns ## COG: L98749 COG1792 # Protein_GI_number: 15674213 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Lactococcus lactis # 44 279 44 285 291 165 40.0 1e-40 MKKFNPNKNIIITLILVIILVTIISLTAAQRSEKGKTNVVQGGVNNSVSMVDRVISFPAR VVENGLSSMGNLINTFKENERLKEKIDSYNELAVQNNNYKREIDSLKQELNLNETLANYE KVTANVITRSPDTWQDLLIIDKGTNDGIEAGMAVMAQKGLVGRVIEVNATTAKVELLTSK NVNSNHFPVRVTSANGESFGLLKNYDNKTNALIVSQLTGDATLKEGDVVQTSGLGGNSPA DLAVGTVIKVKPDSFGLDREVYVKPYADVYGISVVTVVKRSAGESE >gi|307679011|gb|GL456786.1| GENE 32 28857 - 30971 1685 704 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|62291006|ref|YP_222799.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 1 str. 9-941] # 11 703 11 701 714 653 49 0.0 MTEKQVFKTTWGGRPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDVDFFPLTV NYEEKMYAVGKIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVE QDCTPEMAAMFGSSLALAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDIELTVAG TKEAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDAD LKKEIFDAYYNTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFAEHEEEAQLLKEVKQI AEDLEKDVVRELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTL APLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQIIP SEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENYT ILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILEE LTTTIAAPREELSQYAPKIEMIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNVS IASSDAEMIKKAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLAN ERVNNVEDVVKLGDEVLVKVTEIDKQGRVNVSRKALLNEENKEK >gi|307679011|gb|GL456786.1| GENE 33 31158 - 31463 511 101 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227517326|ref|ZP_03947375.1| ribosomal protein S15 [Enterococcus faecalis TX0104] # 1 101 1 101 101 201 99 6e-51 MIRRIIEKEVEQMAISQERKNEIIKEYARHEGDTGSPEVQIAVLTEDINQLNEHARTHKK DHHSYRGLMKKIGHRRNLLAYLRKTDIQRYRELIQRLGLRR >gi|307679011|gb|GL456786.1| GENE 34 31707 - 32270 879 187 aa, chain + ## HITS:1 COG:SP1456 KEGG:ns NR:ns ## COG: SP1456 COG0242 # Protein_GI_number: 15901306 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Streptococcus pneumoniae TIGR4 # 1 187 13 203 203 262 68.0 2e-70 MITMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVG LAAPQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRD VPGYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKENPFALK EGVLVIE >gi|307679011|gb|GL456786.1| GENE 35 32317 - 33093 740 258 aa, chain - ## HITS:1 COG:lin1028 KEGG:ns NR:ns ## COG: lin1028 COG0561 # Protein_GI_number: 16800097 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 4 258 3 256 256 175 37.0 9e-44 MERKLFAFDIDGTLLNSEKKALDSTREALAKLREQGHLVTLATGRSRYMAQEVIWDLDFT NYVLCNGAAAFVDHEQYYQNLLHAEALERLAQDSDQRGLGFDCVGLDDIKKSNQHRAEKM EIAMNSFHFHSPAYDEHFYRQNDIYQALAFYDAEDQCTFEEEYPEFRFIRWHQHSVDVVP KDGSKSATLTYLAKRVGIDAKNIIAFGDGENDREMLSHAGIGVAMGNASPSIQKAATMVT DTNDNDGIWKALKEMKAI >gi|307679011|gb|GL456786.1| GENE 36 33103 - 33756 659 217 aa, chain - ## HITS:1 COG:Cgl0917 KEGG:ns NR:ns ## COG: Cgl0917 COG4912 # Protein_GI_number: 19552167 # Func_class: L Replication, recombination and repair # Function: Predicted DNA alkylation repair enzyme # Organism: Corynebacterium glutamicum # 9 210 19 206 208 119 37.0 5e-27 MDTLQFQKNPETAAKMSAYMKHQFVFAGIPAPERQALSKQLLKESHTWPKEKLCQEIEAY YQKTEREYQYVAIDLALQNVRRFSLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLT ELPTIFALFYGAENFWNRRVALNLQLMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSL RQYSKTNPQWVEELMKELVLSPLAQREGSKYLAKASE >gi|307679011|gb|GL456786.1| GENE 37 33828 - 34631 731 267 aa, chain - ## HITS:1 COG:lin0602 KEGG:ns NR:ns ## COG: lin0602 COG2116 # Protein_GI_number: 16799677 # Func_class: P Inorganic ion transport and metabolism # Function: Formate/nitrite family of transporters # Organism: Listeria innocua # 5 258 6 259 266 273 67.0 2e-73 MKSGSPLFEQIDKSIDKKVNLFSNSFSRYAVRAMLACLFLTLGTAVAFAIAIKGEGISHG LGKMLYAFMFSWSLVMILYMNAELGTSNMLYMTVGVYRKKVNFSLAAKILFTCILFNLIG GVLFGFLVSLTVPFQDLPKDSFFFTSIAGKLEKTTLQILVEAMFANIVVNTAVLVSMRMK DDAGKVAAIIFIIFIFAFLGFEHVIANFPAFSLAYFASNGAIEAFTAGNVVHNLFWAFIG NFIGGGLIMGLGYAWLDKDNKNLTYFD >gi|307679011|gb|GL456786.1| GENE 38 34955 - 35566 1045 203 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29377528|ref|NP_816682.1| 30S ribosomal protein S4 [Enterococcus faecalis V583] # 1 203 1 203 203 407 100 1e-113 MSRYTGPSWKVSRRLGISLSGTGKELARRPYKPGQHGPNSRGKVSEYGMQLTEKQKLRHM YGMNERQFRTLFIKASKIKEGKHGVNFMVLLEQRLDNVVYRLGLATTRRQARQLVNHGHI TVDGKRVDIPSYHVEVGQVIGVREKSQNISTIKEAVEATVGRPAFVSFDTEKLEGSFTRL PERDELYPEIDEALVVEYYNQKL >gi|307679011|gb|GL456786.1| GENE 39 35714 - 36274 168 186 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764517|ref|ZP_02171573.1| ribosomal protein L32 [Bacillus selenitireducens MLS10] # 4 179 1 175 190 69 29 4e-11 MRLLMNKASLRSLILAAEFAVIIAVLSQFTIPLGIVPLTGQTFAIGLTATVLGKRTGTYA ILIYFLLGLIGLPVYAGMSSGFGVLFGPTGGYLIGFIFNGLLTGYILEKTTFNYTWAIIA NIAGALVTLVFGMIWLKYSANLPWPNAFAGGFAPFIIPGIIKAVAAAYVGILIRQRFMKR FLAHLS >gi|307679011|gb|GL456786.1| GENE 40 36336 - 36872 661 178 aa, chain + ## HITS:1 COG:lin1308 KEGG:ns NR:ns ## COG: lin1308 COG0681 # Protein_GI_number: 16800376 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Listeria innocua # 21 167 28 182 188 135 48.0 3e-32 MSSLLKRLVQLVLLVVAVLLIRHYVFSPAAVNGSSMEPTLHNNDRLWVTSIKKPQRFDII AFPSPRNGQRVAKRLIGLPGETVEYRDDTLYINGVSLSEDYLASAKRNVSKNENYTQDFT LETLEATQSLTVPEGMYFVLGDNRPRSDDSRYFGFVKQASVEGVLTFRYYPLDKIGFP >gi|307679011|gb|GL456786.1| GENE 41 36927 - 40829 3429 1300 aa, chain - ## HITS:1 COG:no KEGG:EF3074 NR:ns ## KEGG: EF3074 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 1300 1 1294 1294 2273 97.0 0 MKRINWQRLATIGLCSSFVINAFSGVTAIAETVMSESSPTVANSIKEATPASSARQESTE SSQKTTETSQEEVTQETAKQAETKAPLETPEIKTNTTAQPAENSSENDRQTSISPRWVPN NQVIYPRITLAFTNESGQVFTDENLTLSGTYTKFGYENATSLWRSYAVNYPITSSNAEGG QYRVAVNATVPLPYDFFTDLPANYRMNIYAVEQLKIDNTLKYVDSIVAVPNSTLRMTRYS AQQTTELPQFGNHMTPFVLRTRDSVFSKSSENVFSLNTDGNEFLRILSVAPIGTPVEPVL YGFDGTATYRETLNYVVTRKQVTEKFVDANGVAITPPTGFTQNKKTPMTSNDFTFKQAST LPDTYQADGKTYKFKGWYKGKTKPNTLTTTKAPSYAVTYDGNDDLTVVYEAIQNPVTFQE GKGMSSVQVMNKAIQNPVTLPDRMYRVLFINETGGLTFADRYGFTGELVEVADGKVTPIG PVPTNNNSAVKEITIPGRVFDTERPTPLQYGVRNATFTLPKMYKTVTYQPGPNYTGTAYS IPETYRLSLRSGVKSDIDTTGWRIGLDPTTDPQKFTMSGIYWSSMPTNVRLATLLSATIT GKGVEPSVYTLDENARMYLYLENRRVTENFVDTNGTKITAPSGFAQGKKTVITSDSYTFK QSGDLPDTYKVGTKTYQFKGWYKGKNKPDTLTTTKAPSYPVTYNDDDDLTVVYEEVVMKT YNLPAKDVYFGYVDEAGNLLNTAGFSVEAELGESDETESTVLGKIQGTDEVMSKLKKLSI PGKSYDFPIDKLKTYGARSVNHTIPKQYKTMSITPLATYTGDKTKYPMTKEIRKNIEAPY TVVSQADGVEAFKLTNAGTFFRTRRAFWTWDPNNTLYAMGIYSGTVGKNYNLASPEGTIY YYLENRRVTENFVDPSGAKITPPTGFTQGKQTVIDSDNFTYASTKALPDTYTTGDKSYKF KGWYKGKTKPGTLTTTKTPSYAVTYDDKDDMTAVYEEVQPTAEMTVSRLLEVIPNEASMM WIVKLKNTSEVPLTNVKLAPTAKWAAGISPPTQLAVRIGNTPNKIIPVTAEQWQAGVNLD IEIPVNGEALVTVNTAKITGEPRQLLTAEMTASGNFSAVTASNFVRIQGEDQTITPTPVE EGFISTPTFDFGKITINSSTKQYGLKKAADYYGNGTRNPYLRIKTSQPNWQLTAQLSQLT ASADSLPTSTRLLLGSADVIAIENYNQVTELTNKVGVTKALTLTSDGTSTPVILNNQFTG NDVYQLDFDFANVKLEVPANQGKINEKYQGTVTWNLVTGP Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:16:21 2011 Seq name: gi|307679010|gb|GL456787.1| Enterococcus faecalis TX0312 genomic scaffold Scfld121, whole genome shotgun sequence Length of sequence - 38133 bp Number of predicted genes - 55, with homology - 51 Number of transcription units - 18, operones - 10 average op.length - 4.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 335 181 ## EF2224 cell wall surface anchor family protein + Term 380 - 432 15.3 2 2 Op 1 7/0.000 + CDS 892 - 1830 1036 ## COG4209 ABC-type polysaccharide transport system, permease component 3 2 Op 2 14/0.000 + CDS 1842 - 2765 961 ## COG0395 ABC-type sugar transport system, permease component 4 2 Op 3 2/0.000 + CDS 2789 - 4255 1250 ## PROTEIN SUPPORTED gi|15900035|ref|NP_344639.1| ABC transporter, substrate-binding protein + Term 4277 - 4309 1.5 5 2 Op 4 5/0.000 + CDS 4326 - 4961 559 ## COG5578 Predicted integral membrane protein 6 2 Op 5 7/0.000 + CDS 4933 - 6645 1794 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 7 2 Op 6 . + CDS 6657 - 8138 1663 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain + Term 8142 - 8184 7.3 - Term 8124 - 8178 15.1 8 3 Tu 1 . - CDS 8179 - 10320 2043 ## COG3537 Putative alpha-1,2-mannosidase - Prom 10357 - 10416 11.6 + Prom 10384 - 10443 9.4 9 4 Tu 1 . + CDS 10493 - 11605 577 ## EF2216 hypothetical protein + Term 11609 - 11659 12.0 - Term 11598 - 11644 5.0 10 5 Op 1 1/0.200 - CDS 11649 - 12131 688 ## COG3832 Uncharacterized conserved protein 11 5 Op 2 . - CDS 12153 - 12533 530 ## COG0346 Lactoylglutathione lyase and related lyases - Prom 12631 - 12690 9.4 + Prom 12635 - 12694 11.3 12 6 Tu 1 . + CDS 12745 - 14211 1888 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Term 14229 - 14274 13.2 + Prom 14257 - 14316 5.8 13 7 Tu 1 . + CDS 14339 - 15343 1293 ## EF2212 hypothetical protein + Term 15345 - 15391 12.1 - Term 15333 - 15379 11.3 14 8 Tu 1 . - CDS 15381 - 15734 395 ## COG5294 Uncharacterized protein conserved in bacteria - Prom 15939 - 15998 5.4 15 9 Op 1 . + CDS 15933 - 16637 893 ## COG2738 Predicted Zn-dependent protease + Prom 16639 - 16698 2.6 16 9 Op 2 . + CDS 16721 - 17059 539 ## EF2209 hypothetical protein + Term 17064 - 17091 0.1 - Term 17052 - 17079 0.1 17 10 Op 1 . - CDS 17086 - 17931 817 ## COG0384 Predicted epimerase, PhzC/PhzF homolog 18 10 Op 2 . - CDS 17988 - 18839 690 ## COG2508 Regulator of polyketide synthase expression - Prom 18928 - 18987 4.0 + Prom 18775 - 18834 3.5 19 11 Tu 1 . + CDS 18917 - 19438 637 ## COG0590 Cytosine/adenosine deaminases - Term 19514 - 19546 2.3 20 12 Op 1 . - CDS 19632 - 20768 799 ## COG0582 Integrase - Term 20799 - 20833 -0.9 21 12 Op 2 . - CDS 20836 - 21036 214 ## SP70585_0029 phage protein 22 12 Op 3 . - CDS 21052 - 21936 550 ## REQ_07680 membrane protein 23 12 Op 4 . - CDS 22026 - 22499 487 ## EF1276 hypothetical protein 24 12 Op 5 . - CDS 22516 - 23088 394 ## COG1396 Predicted transcriptional regulators - Prom 23108 - 23167 9.1 25 13 Op 1 . + CDS 23247 - 23480 230 ## SAOUHSC_02234 repressor-like protein 26 13 Op 2 . + CDS 23562 - 24281 586 ## COG3645 Uncharacterized phage-encoded protein 27 13 Op 3 . + CDS 24297 - 24545 161 ## gi|315157435|gb|EFU01452.1| hypothetical protein HMPREF9508_02805 28 13 Op 4 . + CDS 24567 - 24740 205 ## EF2845 hypothetical protein 29 13 Op 5 . + CDS 24737 - 24847 94 ## 30 13 Op 6 . + CDS 24848 - 25003 185 ## gi|307286466|ref|ZP_07566567.1| conserved domain protein 31 13 Op 7 . + CDS 25060 - 25305 339 ## gi|315157438|gb|EFU01455.1| conserved domain protein 32 13 Op 8 . + CDS 25298 - 25975 740 ## LM5578_2513 hypothetical protein 33 13 Op 9 . + CDS 25975 - 26898 671 ## JDM1_0973 hypothetical protein + Prom 26912 - 26971 1.9 34 14 Op 1 . + CDS 26997 - 27575 369 ## MPTP_1437 hypothetical protein 35 14 Op 2 . + CDS 27579 - 28532 632 ## BCA_1890 GP45 36 14 Op 3 . + CDS 28533 - 29162 260 ## gi|315157443|gb|EFU01460.1| DNA polymerase III beta subunit protein 37 14 Op 4 . + CDS 29163 - 29582 365 ## lin1252 hypothetical protein + Prom 29619 - 29678 3.6 38 15 Op 1 . + CDS 29882 - 30952 578 ## lin1253 hypothetical protein 39 15 Op 2 . + CDS 30955 - 31227 303 ## EF2837 hypothetical protein 40 15 Op 3 . + CDS 31211 - 31303 107 ## 41 15 Op 4 . + CDS 31306 - 31515 309 ## EF2123 hypothetical protein 42 15 Op 5 . + CDS 31466 - 31726 353 ## EF2121 hypothetical protein 43 15 Op 6 . + CDS 31693 - 31782 70 ## 44 15 Op 7 . + CDS 31779 - 32081 289 ## gi|307270093|ref|ZP_07551413.1| hypothetical protein HMPREF9498_02211 45 15 Op 8 . + CDS 32093 - 32332 393 ## gi|315144724|gb|EFT88740.1| conserved domain protein 46 15 Op 9 . + CDS 32333 - 32611 438 ## EF2120 hypothetical protein 47 15 Op 10 . + CDS 32623 - 33126 559 ## EF2118 hypothetical protein 48 15 Op 11 . + CDS 33133 - 33282 159 ## + Term 33330 - 33363 3.1 + Prom 33657 - 33716 4.0 49 16 Tu 1 . + CDS 33743 - 34264 486 ## EF2828 ArpU family transcriptional regulator + TRNA 34640 - 34711 65.5 # Trp CCA 0 0 + Prom 34636 - 34695 76.6 50 17 Op 1 . + CDS 34880 - 35299 247 ## gi|315157454|gb|EFU01471.1| hypothetical protein HMPREF9508_02825 51 17 Op 2 . + CDS 35336 - 35857 511 ## COG1475 Predicted transcriptional regulators 52 17 Op 3 . + CDS 35844 - 36452 286 ## YpsIP31758_2230 hypothetical protein + Prom 36509 - 36568 2.5 53 18 Op 1 . + CDS 36589 - 36777 171 ## gi|256617869|ref|ZP_05474715.1| predicted protein 54 18 Op 2 . + CDS 36853 - 37476 485 ## gi|315157458|gb|EFU01475.1| hypothetical protein HMPREF9508_02829 55 18 Op 3 . + CDS 37525 - 38131 403 ## COG5484 Uncharacterized conserved protein Predicted protein(s) >gi|307679010|gb|GL456787.1| GENE 1 3 - 335 181 110 aa, chain + ## HITS:1 COG:no KEGG:EF2224 NR:ns ## KEGG: EF2224 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 110 1390 1499 1499 179 97.0 4e-44 VNEEAKAGEIILNKAKVGDGINPPEEPEVPITPEEPAKNKKETKKVVTDQNKPTKNSKNE IAINKKETSKSSYLPKTGEKVQKIFAYLGVGLILIVLILYVIKRNKEKEE >gi|307679010|gb|GL456787.1| GENE 2 892 - 1830 1036 312 aa, chain + ## HITS:1 COG:L129753 KEGG:ns NR:ns ## COG: L129753 COG4209 # Protein_GI_number: 15673479 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type polysaccharide transport system, permease component # Organism: Lactococcus lactis # 7 312 4 310 310 414 72.0 1e-115 MKKKNGFFQNVWRYKALILMALPGFIWFIFFFYIPVLANVVAFKDFHISPDGFLASLRES PWVGFENFKFLFASKDAWLITRNTILYNVVFLAFNLFFAIAFAIIMSELRNRRLVKVYHT MSLLPYFLSWMVINYFVYAFLSPDKGILNQWITGNGGTMINWYADPRWWPVIFVFLNVWK SLGYNSIIYYASVMGIDPTYYEAAMVDGANKWQQIKNVTIPQILPMMSVLLILNIGGIFR ADFGLFYIVPRNSGALYNVTSVLDTYIYNGLTATGDVGMTAAAALYQSVVGACLLLIANL VVRRIEPDSALF >gi|307679010|gb|GL456787.1| GENE 3 1842 - 2765 961 307 aa, chain + ## HITS:1 COG:L128777 KEGG:ns NR:ns ## COG: L128777 COG0395 # Protein_GI_number: 15673478 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Lactococcus lactis # 1 307 1 306 306 411 71.0 1e-115 MKKKKVTSVNVRSFNPTANLIFNIVIAIFAISCVVPFFFVIMISLTSEGSLAANGYRFWP KEFSLEAYRYIFQGAMSQRIIHALGVTVFITVTGTIVNATMTSLYAYVISRSNFPFKKFF TLFALITMLFSPGMVANYLVMTNLLQLKDTIWALILPLALGPFNILVMRTFFKKTVPDSI IESARIDGASEMRIFVSIVLPLAVPGIATISLFAALGYWNDWFNALLYIQKDTLVPLQYL LMKIQNNLEFLSRSTDMGAAAQEGLGVLPSESARMAIVVLSTLPIALTYPFFQKYFVGGL TIGGVKE >gi|307679010|gb|GL456787.1| GENE 4 2789 - 4255 1250 488 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900035|ref|NP_344639.1| ABC transporter, substrate-binding protein [Streptococcus pneumoniae TIGR4] # 1 488 1 491 491 486 48 1e-136 MKKWQKGLAVAGAAALAVGLSACGKSSKDAASKGDDSTPTLLMYRVGDKPDNYDQLIDNA NKIIEKKIGAKLKMEFVGWGDWDQKMSTIVASGESYDISLAQNYATNAQKGAYADLTDLA PKYAKEAYDQLPDNYIKGNTINGKLYAFPILGNSYGQQVLTFNKEYVDKYNLDISKVDGS YESATEVLKEFHKKEPNIAAFAIGQTFFATGNYDFPIGNQYPFAVKTTDTGSPKIINQYA DKDMINNLKVLHQWYKDGLIPTDAATSTTPYDLNTNTWFMRQETQGPMDYGDTILTQAAG KPLVSRPLTEPLKTTSQAQMANYVVANTSKNKEKSVELLGLLNSNPELLNGLVYGEEGKQ YEKVGDDRVKLLKDYTPTTHLSAWNTGNNLIIWPEESVTEDMVKERDKSIEEAKDSPILG FTFVNDKVKTEITNVATVMNRYAASLNTGTVDPEETLPKLMDDLKTAGWDKVQKEMQTQL DEYIQSQK >gi|307679010|gb|GL456787.1| GENE 5 4326 - 4961 559 211 aa, chain + ## HITS:1 COG:SPy1589 KEGG:ns NR:ns ## COG: SPy1589 COG5578 # Protein_GI_number: 15675476 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Streptococcus pyogenes M1 GAS # 5 202 3 200 201 118 37.0 7e-27 MESTGIQRLFYLSWTVIKLNLLFVLFSLAGGIIFGVGPALQMMTDFILEEGMNYQAITVK RAFESWKAHFKRSNCYFLLFLFTLGFVFYNIYLAVQFTGIMWLIITFILFFVSLILVIFY IYMLLYEGSYFISTIDLMKLSFISIFLNLGVFFKVLFGVISIVALTWKMKGLLLFASFAL IMMWCAYVTRKNRQFIDGKLEQNEANLQKTV >gi|307679010|gb|GL456787.1| GENE 6 4933 - 6645 1794 570 aa, chain + ## HITS:1 COG:SPy1588 KEGG:ns NR:ns ## COG: SPy1588 COG2972 # Protein_GI_number: 15675475 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Streptococcus pyogenes M1 GAS # 1 566 6 568 574 360 36.0 3e-99 MKRIFKKLFKKKYLLNRLVQKYSLLLTSIILLTVAALCVYVTYTINLSIDSQKNNAVSQI DSYVTNKNNAATNMINELAGSASKIENMRKYMELSPPEYFDYTYSQWSEDRVSTHFGNNL STLFSTFPDLEEVIIRLDEFDQVLFANRTATNGKKMDMSSIKKHGFQLMRIISDPYTGQP LGELYTVFSSQELLGNQADLLKKSGINAFIYDSAGNQIFSEKAQFTKEEERQLDKRMHTD SDIQQVFHNRYDITEIESSGRSTILLLTSRRVLFQQLFMNYAAILGIGLLLIVILLVGLN RLFKRYSQQVQLILEATRAIGDGNLKERIDTNQVQEELNDIASAINFMVDSLDQYIHDIY TLEIKQRDAHMRALQSQINPHFLYNTLEYIRMYALSRQQEELADVVYAFSTLLRNNINQE KTTTLAEEISFCEKYVYLYQMRYPDQFAYKFEIEETIADVEIPKFIIQPLVENYFVHGID YQRQDNAIKVHAYREGEKIIVAVVDNGKGITANRLEEIRERLNQTEIETEQSIGLRNVHE RLQRFFGESYGLTIEGKEGEGTTIRLSFVA >gi|307679010|gb|GL456787.1| GENE 7 6657 - 8138 1663 493 aa, chain + ## HITS:1 COG:SPy1587 KEGG:ns NR:ns ## COG: SPy1587 COG4753 # Protein_GI_number: 15675474 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Streptococcus pyogenes M1 GAS # 1 492 1 491 494 361 43.0 2e-99 MYRVMFVDDEYMILEGLKWIIPWQELGFEIVKTARSAQEALAFLETESIDVLLTDITMPE MSGIELIEQAKKKGHQFISLILSGYQEFDYVKKGMALQVQDYLLKPVNKQELLANIQRIK TELDQQKKSHARVRLYLENGLMRWLNDEISEGEYEELMQQFTTIKPGDFTVLLVEAEMPF LETIKELFMKKGQLLFIESWMSTYHQLLLIYKGARQEAFLFIREIEAILAGQGQIFVGES VNEWETVYESYEKVKQLQAIETFYQEFLPNNQKEQMNRSAEDFTFLAFNQALMIGDMQTI QRELDAIFNQLSQQHATPEYVRYVVFLLFSDISRQYPTVLEENYEKIVEEIRASNNLNTL YALMQQVLAEVKNKPKIKKYSESVSQAVERIEQGYLEELNLKTVADELHLNPSYLGQIFK KETKRSFSQYLNQVRTKHAQKLLLYTDDTINEISEKVGFNNTNYFSKMFKKLNGITPKEF REQYQSNYAGVEE >gi|307679010|gb|GL456787.1| GENE 8 8179 - 10320 2043 713 aa, chain - ## HITS:1 COG:L135972 KEGG:ns NR:ns ## COG: L135972 COG3537 # Protein_GI_number: 15673483 # Func_class: G Carbohydrate transport and metabolism # Function: Putative alpha-1,2-mannosidase # Organism: Lactococcus lactis # 1 710 1 715 717 951 64.0 0 MNIQAIDTRHGTANQHSFSNGNCLPYTGVPFGMNFYAPQTTDQKGSWWFHPEDRTFQGYR VTHQPSPWMGDFSHLLMTPVSGSLSELSLFHAQSSYRPEESLFSPVEINLTQLRYQITSQ LIPSMYGGILTIDYQQKDNHLLLTLPGRYQVKQLDDHQVAVKVINYSGCEDPDFSFYFVL HFEQPLTKWFAPSSGEDGKILLSFGNIAQQVVHFSSSFISEKQAQLNLAREISLRSTEML QQGIADWHNYFDRLKVTHENPEHTKTFYHTLYRTFLFPQTFYELDENQQPIHYDTFSQTV RPGVLYTNNGFWDTYKTVYPLFSLIAQEKYEEMLEGFLNSYNETGFLPKWLSPDERGLMP GTLIDAVIADAAVKKIRPDLMPQFLEAMKKGATQQSERENYGRQGTLDYLKYGYVPSTYH ESVNHTLDYAYSDFCISQVAKTLNDSETATFYRQQALNYQQLFNPETGFMQAKDTEGNFR PDFLDIRWGKDYAEGSAWQSSFAVYQDFAGLIKLYGSELAFEKKLIQLCNQAPNFNVEGY GFEIHEMSEMAAIDFGQLAISNQPSFHYPFLFSYIGKPEMAQPLLKQLMQTFDASPTGYP GDEDNGSMSAWYIFNSLGFYPVTPGAGEYVIGMPLVQTAEVKLSNGKQLTIQTSPNKVQQ QFIHEIQLNQEKHTAPYFTHQELLNGGTLDYQLGIVPNPQTTAERPFSLSTEK >gi|307679010|gb|GL456787.1| GENE 9 10493 - 11605 577 370 aa, chain + ## HITS:1 COG:no KEGG:EF2216 NR:ns ## KEGG: EF2216 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 370 1 370 370 568 99.0 1e-161 MIVIYFFSTKSQQFFAYVWAIFPVIAFFLVSFYTLDFLFSPSYLIMVPVFTIMFKINYKK DYSFVALLKMSIRQFVISFLAFIASSSFSWSIILNSSVTFLIVYLFYSSATPMRYHSYLM MFTFCQLIQVKGNTFLMQSQVVAFLIGLFLLALTLNAWWQTGLSQLTSLKSRGHVRFFKS IQLNMKQQKLTVINFWHDLQQTFFGITSFKQFLESPDERVQRFRLAIRMSFTITLSFILM WSVGGIKIIWIPMNVFLLLHPVKAEMNTRIKTRFWGTLLGCFLSLFVVNWLQLPLTHLIV SSLIGIFVYALKPGTVLQVTMATIFGLCLATISLRGMYAAELRVSFVLLAIFVVCLIDLG LFVYQRILRF >gi|307679010|gb|GL456787.1| GENE 10 11649 - 12131 688 160 aa, chain - ## HITS:1 COG:lin0420 KEGG:ns NR:ns ## COG: lin0420 COG3832 # Protein_GI_number: 16799497 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 12 155 15 156 160 73 34.0 1e-13 MKDTFRLENQTIYFGTERAISASPQTIWRYLTETDKLKQWFPELEIGELGVNGFWRFILP DFEETMPFTDYAEEKYLGVTWDTGIIYFDLKEQAPHQTLLVFSESLPENFTTPRHKDIAG WSIVLNRLKQVVETPDAAPEKIDFPQIENHYLEKLTNLEN >gi|307679010|gb|GL456787.1| GENE 11 12153 - 12533 530 126 aa, chain - ## HITS:1 COG:CAC0249 KEGG:ns NR:ns ## COG: CAC0249 COG0346 # Protein_GI_number: 15893541 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Clostridium acetobutylicum # 1 126 1 126 126 158 61.0 3e-39 MFFKEIHHVAINASNYQATKNFYVEKLGFEVLRENHRPEKNDIKLDLKLGSQELEIFISD QFPARPSYPEALGLRHLAFKVEHIEEVIAFLNEQGIETEPLRVDDFTGEKMTFFFDPDGL PLELHE >gi|307679010|gb|GL456787.1| GENE 12 12745 - 14211 1888 488 aa, chain + ## HITS:1 COG:lin1223_2 KEGG:ns NR:ns ## COG: lin1223_2 COG1263 # Protein_GI_number: 16800292 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Listeria innocua # 92 474 1 383 403 535 74.0 1e-151 MGKFQSDAQQLLKAVGGKENISAVSHCATRMRFVLKDPKKADVPVIEDIPSVKGTFTNAG QFQVIIGNEVPQFYNDFSAISGLEGVSKEEGKAAAKSNLSPVQRVVSVLAEIFTPLIPAL VIGGLILGFRNILEGVPFGFLDGQTIVEVSQFWNGVNSFLWLIGEAIFHFLPVGITWSIT KKMGTTQILGIVLGITLVSPQLLNAYSVATTKAAEIPFWDFGFAQVNMIGYQAQVIPAML AGFLLAYLEIFFRKVIPQAISMIFVPLFALVPTVLAAHVILGPIGWTIGSWVSDIVNAGL TSTFNWLFGAVFGFMYAPLVITGLHHMSNAIDLQLIADFQSTNLWPMIALSNIAQGSAVL AVIFMHRGNKKEEQVSIPAMISCYLGVTEPAMFGINLKYVYPFVAGMIGSAMAGMFATLM GVRATSIGVGGLPGILSIVPQYYLPFLGAMVIAIIVPMGLTYIFRKKGIFNKVDPVDEAT GMLYSEEG >gi|307679010|gb|GL456787.1| GENE 13 14339 - 15343 1293 334 aa, chain + ## HITS:1 COG:no KEGG:EF2212 NR:ns ## KEGG: EF2212 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 334 1 334 334 580 99.0 1e-164 MDIYLKKAILHIIDRETGTPVFSEKELDLTTEYIRTYLTAKISKLSTAQTKTGTLAENSS FVDTLRGIPSDFVKKSQEVTQHWYDVYSGSEDAPSADILFILYELDTVLHVAMIKLNYKE SYTHYVDYEEESVYNKLIINRAILSSKSQKPDEGITVDLDTLAFELLEKRYEFSGEKIWY FSEKVIETQAAPSMEENIKEIKKAVKRIGKKFNEDEFELMASVKEAVYDSIEETGTIDNE QIAEQVFKENVSAKLAYQEEVNESKFVDKTPPVRESREISEKKFGKQKLKMDNGIELIVP LDVYRNGDLIEFVNNPDGTVSIMLKNIEKISNQL >gi|307679010|gb|GL456787.1| GENE 14 15381 - 15734 395 117 aa, chain - ## HITS:1 COG:L177221 KEGG:ns NR:ns ## COG: L177221 COG5294 # Protein_GI_number: 15672565 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 2 117 3 116 120 84 39.0 7e-17 MKTLLKILIPIVILAGGSWGVYNYYYGGEAYYTQITTSGEKKDEKTNSGEAMTIYYYQQP AFNKNGEEKTVELNESRDQPLRMKAYLKLKVNPRKGVISWNEVTEKEVPEKALEKLK >gi|307679010|gb|GL456787.1| GENE 15 15933 - 16637 893 234 aa, chain + ## HITS:1 COG:TM1511 KEGG:ns NR:ns ## COG: TM1511 COG2738 # Protein_GI_number: 15644259 # Func_class: R General function prediction only # Function: Predicted Zn-dependent protease # Organism: Thermotoga maritima # 5 228 2 224 230 175 44.0 7e-44 MMPFYFGIDPTYILVIIGIAISGAASAYVNSTFRKYDQVRSSKHVTGTQAAQYILQKEQI NDVGVQQIAGDLTDNYNSGNKMLSLSEATAQSTSVAAIGVAAHECGHAVQDHTNYVPLRL RAAIVPVANIGSTISFPLILIGVLFSWNQTLINIGILAFSLALIFQLVTLPVEFNASRRA LSILSEGGLLTEEEVPMARKVLFAAALTYVAAALSTFLQLLRLVILFGGNNRRD >gi|307679010|gb|GL456787.1| GENE 16 16721 - 17059 539 112 aa, chain + ## HITS:1 COG:no KEGG:EF2209 NR:ns ## KEGG: EF2209 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 112 1 112 112 132 100.0 5e-30 MKASTKIGIGLSIAAVASVSVAVIASEKIIKKVSHVSNRYKVKKFVDDKFDGNQKLLSIV DDLSDDELDSVLNVVDRVKDGGSKLAEYGEKVKDNTDSLKERFFTFIEDAMK >gi|307679010|gb|GL456787.1| GENE 17 17086 - 17931 817 281 aa, chain - ## HITS:1 COG:lin0782 KEGG:ns NR:ns ## COG: lin0782 COG0384 # Protein_GI_number: 16799856 # Func_class: R General function prediction only # Function: Predicted epimerase, PhzC/PhzF homolog # Organism: Listeria innocua # 1 279 1 279 282 357 63.0 2e-98 MKITAYVASAFSKNHEGGNKAGVVFMTQPLTRTQKMAIAKELGFAETAFISDSKIADFRL EYFTPKEEVDLCGHATIGAFTIMNHLNKLLQTAYTIETNSGLLAITANGEQLFMEQTVPT FYDTLTLEELSGCFDLNAVATAFPIQIVSTGLKDILVPIKNAQLLQDLQPNFEKIKLLSQ KYGVIGMHLFALSEENIICRNFAPLYGIDEEAATGTSNGALACYLYHHQILQKTNYTFAQ GYTLNAPSEVLVRLNTTPQKTIDQVLVGGRGYYVETKELFL >gi|307679010|gb|GL456787.1| GENE 18 17988 - 18839 690 283 aa, chain - ## HITS:1 COG:lin2875 KEGG:ns NR:ns ## COG: lin2875 COG2508 # Protein_GI_number: 16801935 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Listeria innocua # 1 279 1 282 293 130 35.0 3e-30 MIIENLSQLYPKGYLSKTIGSEATYSIPVDDQFFIVNKAFLSIKEQHLLEALFPISENPT ITGNHPWFSYLFQQAKLPAEGTFRMLQIQTNVTKELQAEWQFNLTKMFPDTVDCFSPSNN MYILVEEQSKNTFQQEEIQGIFLTLDTDFDCTSAVFVGNFYSSEDILRRCFHEEQRIFSE ELNSSSRTTVFSLTDVALHYFTKEAMSQNVLVEYYRRLLNKDTDIQPIISALWKNQGNIS STAKDLFMHRNTLHYRLEKFFEQTGLSLKKMDDLIFCYLLLRK >gi|307679010|gb|GL456787.1| GENE 19 18917 - 19438 637 173 aa, chain + ## HITS:1 COG:lin2867 KEGG:ns NR:ns ## COG: lin2867 COG0590 # Protein_GI_number: 16801927 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Listeria innocua # 12 164 2 154 154 193 62.0 1e-49 MGKKETTLTQEEKEFFMREAIAEAKKAEGLAEVPIGAVIVRQGEIIGRGHNLREARQEAT AHAEMYAIQEACRGIENWRLEETQLFVTLEPCPMCSGAMLLARIPEVYYGATDPKAGTAG TLMNLLEDERFNHVAYVEAGVLEEECRLLLVQFFKKLRAKKKEEKLLKNQKKD >gi|307679010|gb|GL456787.1| GENE 20 19632 - 20768 799 378 aa, chain - ## HITS:1 COG:SPy1488 KEGG:ns NR:ns ## COG: SPy1488 COG0582 # Protein_GI_number: 15675393 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Streptococcus pyogenes M1 GAS # 1 376 1 380 380 265 40.0 1e-70 MWIEELPNGKFKYFERYKDPYTEKYRRVSVTLNSKSNQAKKQAMMELQDKINNRMEKKDQ QKVSLENLLNSWWQQHQLSIRKTSVKAYGKILKYIFSNMNVDVLIRNTDTKFFQDFINDL PHSWEYKKKFKSVLNMSFTYAQDMGMIDENPINRVKVVKPPLTKENFENIESKYLEEKEV YQLLNYYYSTFQSVHHGRLAEFMYLTGLRAGEAISLTINDYVKNEHAILVNGTLDYSNGY KNATKELPKTLASFRKVELSNRAVKIIEELILEREIKFKEQTNYLFVGKTGKPIQVNSFN ASLKKANESLGKNKINKTISSHIFRHSHISLLAELNVPVKAIMERVGHVDTETTLKIYTH VTKKAKTNLVEALNKYGK >gi|307679010|gb|GL456787.1| GENE 21 20836 - 21036 214 66 aa, chain - ## HITS:1 COG:no KEGG:SP70585_0029 NR:ns ## KEGG: SP70585_0029 # Name: not_defined # Def: phage protein # Organism: S.pneumoniae_70585 # Pathway: not_defined # 1 65 1 65 304 90 70.0 2e-17 MKVGMRKPSIKKSISARTTGKAKRKLKKAVIPGYGQKGTGFIKNPKKAMYNKVYNKTTFS FWDLFK >gi|307679010|gb|GL456787.1| GENE 22 21052 - 21936 550 294 aa, chain - ## HITS:1 COG:no KEGG:REQ_07680 NR:ns ## KEGG: REQ_07680 # Name: not_defined # Def: membrane protein # Organism: R.equi # Pathway: not_defined # 207 292 113 198 201 79 44.0 2e-13 MKKRVILTSLLLPIIFISGCSASGNDDKTKEAETHEKKQTTKIPENKLGIDSKKVIESNL NELTESKYELTNKYDSYLTSKNLKVEIFKESLSPIAFALFTKTDEKQPSALTIFSTMRLA NSVVEKKFDDLILVLENSIPDNSKKYTSKSENSIDDNKFVTFVFNNDLNSNDLDELLADV LAGKDKKAQETTASSSQSSKVPLEYTNAKIKAEEYINHSSFSKISLYKQLQYEKFSDEAA NFAVENISTNWNKQAVNKAKEYMESMDISKEKLKDQLSYEGFTDSEITYALNNI >gi|307679010|gb|GL456787.1| GENE 23 22026 - 22499 487 157 aa, chain - ## HITS:1 COG:no KEGG:EF1276 NR:ns ## KEGG: EF1276 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 156 1 156 157 221 71.0 9e-57 MNEYELLVSEVQKKAPVIETDLFQNTGCYGLYRDGRIYIEKSLSLVEKRNVLAEELGHHD TSFGDILNQDCLENRKQELKARQYALEQLVTLDDLIKCSESGFSNHYTCAEFLGVDVETL KNVLAYYRQKFGDTHFYKGRIFEFNDLSVMILNTNLQ >gi|307679010|gb|GL456787.1| GENE 24 22516 - 23088 394 190 aa, chain - ## HITS:1 COG:L38687 KEGG:ns NR:ns ## COG: L38687 COG1396 # Protein_GI_number: 15672993 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 3 125 2 123 180 100 52.0 2e-21 MDRVKTSARLKQLMSERNLKQVDILRLSEPYQKELNIKMSKSTLSQYVTGKQSPDQNRIY LLSKTLDVNEAWLMGFDVSKKRIPDEQRSSEKNDFDIVPIFNQLEPKLQQLIYNEAKSHL EKQNKASNNVVNINKKKYDTLAAHSPDPDKVFTDEEKLKINQFLDKVDADYNRKQKECKH LFDDESDDKE >gi|307679010|gb|GL456787.1| GENE 25 23247 - 23480 230 77 aa, chain + ## HITS:1 COG:no KEGG:SAOUHSC_02234 NR:ns ## KEGG: SAOUHSC_02234 # Name: not_defined # Def: repressor-like protein # Organism: S.aureus_NCTC8325 # Pathway: not_defined # 1 73 1 73 74 115 75.0 7e-25 MCYDYSKLAGRIVEKFGTQYNFAIAMGLSERTISLKMNGKVSWKDTEITKACKLLDLETN FIHLYFFKEKVHVCEQR >gi|307679010|gb|GL456787.1| GENE 26 23562 - 24281 586 239 aa, chain + ## HITS:1 COG:SPy0946_2 KEGG:ns NR:ns ## COG: SPy0946_2 COG3645 # Protein_GI_number: 15674964 # Func_class: S Function unknown # Function: Uncharacterized phage-encoded protein # Organism: Streptococcus pyogenes M1 GAS # 118 237 4 123 127 145 56.0 4e-35 MNELIKVTTNENDEQLVNGRELYEFLGVKDNYTDWFKRMIKYGFDENVDFISFSEKSDKP FGGRPQVNHYVKLDMAKEISMLQRTERGKQARRYFIQLEKFWNSPEMVTKRALEFQQKKI EVLQLENESLKPKALFADAVDASKTSILIGDLAKLIKQNGIDIGQNRLFQWLRDNGYLIA RKGESYNMPTQRSLDLGIAEIKERTHNNPDGSIRISRTPKITGKGQIYFVNKFLHDKTA >gi|307679010|gb|GL456787.1| GENE 27 24297 - 24545 161 82 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315157435|gb|EFU01452.1| ## NR: gi|315157435|gb|EFU01452.1| hypothetical protein HMPREF9508_02805 [Enterococcus faecalis TX0312] # 1 82 1 82 82 144 100.0 1e-33 MQITLAKTIDLQQAWMAKDEAIVYFGYQHHKPTFQKLLREFKEHKKFKDGYRLVTSCMPI IHIQKFDEFLVWREKNKYKRNK >gi|307679010|gb|GL456787.1| GENE 28 24567 - 24740 205 57 aa, chain + ## HITS:1 COG:no KEGG:EF2845 NR:ns ## KEGG: EF2845 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 57 21 77 79 62 75.0 8e-09 MRKIYNLRRIAVLLIVFGLGLLVGGNFNPIIQNVYIGLFIIWTLFYDLALEDREVKK >gi|307679010|gb|GL456787.1| GENE 29 24737 - 24847 94 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTRKDKLQQTKKLADLWYQQQKNQIYIAQQKERRGI >gi|307679010|gb|GL456787.1| GENE 30 24848 - 25003 185 51 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307286466|ref|ZP_07566567.1| ## NR: gi|307286466|ref|ZP_07566567.1| conserved domain protein [Enterococcus faecalis TX0109] conserved domain protein [Enterococcus faecalis TX0109] conserved domain protein [Enterococcus faecalis TX0312] conserved domain protein [Enterococcus faecalis TX1346] # 1 51 1 51 51 79 100.0 1e-13 MFQAVGKDSLKIYVVEDTKALVFQKLKEKYPDTAINKAVFPEALFIQETKK >gi|307679010|gb|GL456787.1| GENE 31 25060 - 25305 339 81 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315157438|gb|EFU01455.1| ## NR: gi|315157438|gb|EFU01455.1| conserved domain protein [Enterococcus faecalis TX0312] # 1 81 1 81 81 121 100.0 2e-26 MRVEVDSMQRIVLIDNHSPYGSLIFEKDAINNHVAVYQDSEDEEVRTVFESLDESAYFKK IELIEGLEKVLSLLKEEEQNE >gi|307679010|gb|GL456787.1| GENE 32 25298 - 25975 740 225 aa, chain + ## HITS:1 COG:no KEGG:LM5578_2513 NR:ns ## KEGG: LM5578_2513 # Name: not_defined # Def: hypothetical protein # Organism: L.monocytogenes_08-5578 # Pathway: not_defined # 5 147 4 140 219 78 37.0 2e-13 MNNCSENLEKLFDGMYKLKSKLIQPKFDAEVAYSTKKGGMNFQYATLKAIEEAIRKAAQE SESGIDFQQNVVNENNALKVTTIITHVSGQYIVHGPFEFPNSGTNPQGLGSLTTYARRYS LSAAFGIAADKDDDGQTAAEKNNDTSKVNLISGKQLATLNDHIRQLSELSNSELDYVRNE LSKELNVDVNENMPSSMFNKAVEVLKQWIQQFQPQPEENITWGQS >gi|307679010|gb|GL456787.1| GENE 33 25975 - 26898 671 307 aa, chain + ## HITS:1 COG:no KEGG:JDM1_0973 NR:ns ## KEGG: JDM1_0973 # Name: not_defined # Def: hypothetical protein # Organism: L.plantarum_JDM1 # Pathway: not_defined # 1 306 1 285 286 140 31.0 1e-31 MTNELTTELQFNVDFKASKITIQNEAQLSEMVESAVKHYSTMIFTDENIPEAKKARADLN KVVTLLDDQRKEVKNQYDKPLKDFEEKIKKYTEKISEVSSEINESIKSYEEAEKQKRSKK LQKVIAEMSENYNVSIDEIEIASSWTNKTAFTVKGEPNKKTIEEIAASMVAVASEKERIK NDKLIVENYAKAVGLDSFSWVALIDKGSTAPELIKEIDSAVALKKEQEERERAKKEHDEA IAALKTETINNKTVDTATGEIITEEAPKTCKKQQEKTVTLRLTAEHQKLVALNNFIINNG IQVEVIE >gi|307679010|gb|GL456787.1| GENE 34 26997 - 27575 369 192 aa, chain + ## HITS:1 COG:no KEGG:MPTP_1437 NR:ns ## KEGG: MPTP_1437 # Name: not_defined # Def: hypothetical protein # Organism: M.plutonius # Pathway: not_defined # 1 192 37 228 228 271 63.0 1e-71 MYFDYTGPREVEIRFIDPRKFSVAQRRFIFAMLEDIFSFTGQETEVLKEMFYLRFEALQG YEISLRNDSTNTMDDATILANIILNFIFENNIPFKKGYDILPANQEYYFYKCITNRVCCI CGKTGADIDHFDKALGRRKRKSVDHTEYTFASLCRCHHTEKHDIGIKAFKAKYHVKGIKL NQDTIKKLNIGG >gi|307679010|gb|GL456787.1| GENE 35 27579 - 28532 632 317 aa, chain + ## HITS:1 COG:no KEGG:BCA_1890 NR:ns ## KEGG: BCA_1890 # Name: not_defined # Def: GP45 # Organism: B.cereus_03BB102 # Pathway: not_defined # 1 264 1 259 282 197 45.0 6e-49 MAEISWIKLKTTMFDDEKIKLIQSMPEADAILVIWIRLLVLAGKTNDEGLIYIQRNMPYT EEMLATLFSKPVNVVRLALMTLQQFNMIDLNEDGLIAIENWDKHQNIEGMEKVRLKNAER VRKHRERKKQQALEDKNSGNVTCNVTVTDCNGTDKDIDKEIDIDKDKKNRSKTSCKYSDE HLRLAEKLKNNLINDFPSEMKKVKIEKWADVFRLIEERDQQTIAAIDYVLDWLPTNSFWF GNIRSASKLRTQFEKLKFEIKNEKERGQQRTTYQRQNVRVENLPEWAKEPKENTEKKLSP DEQAELDRQIKEFLEGK >gi|307679010|gb|GL456787.1| GENE 36 28533 - 29162 260 209 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315157443|gb|EFU01460.1| ## NR: gi|315157443|gb|EFU01460.1| DNA polymerase III beta subunit protein [Enterococcus faecalis TX0312] # 1 209 1 209 209 402 100.0 1e-110 MNDNKLSKHLKRAVSKFESRPILRCVHYDANGSIAATDSHRLLLIENFHNHNKEINQDIR TMEILDAPYPELGHLIPNKAKSKIKITISLSVLLRAAKALNTSTDEIIVMKIEQGKITFT NLHDEKIYGSPVKIEVNAQVVGESMKLGVNSRYIIDACEFLLDAKERYAVDDTVIHLYSE NKPFTLEIKEGKYLYLVTPVRLNLPDGGK >gi|307679010|gb|GL456787.1| GENE 37 29163 - 29582 365 139 aa, chain + ## HITS:1 COG:no KEGG:lin1252 NR:ns ## KEGG: lin1252 # Name: not_defined # Def: hypothetical protein # Organism: L.innocua # Pathway: not_defined # 1 139 6 140 140 97 47.0 2e-19 MTDVKEKALVIMLKEMEKEHTKAEDKIHNWLCDQEDEELFKGVLKQGKSISNALNYCGHK ARETAMKGVAIVDDLEVFDWVKEYYLSDETNVKQETSQVATSIKSKNKPVKDKKKSKEKP KANKPKINEGLQLDLLDFL >gi|307679010|gb|GL456787.1| GENE 38 29882 - 30952 578 356 aa, chain + ## HITS:1 COG:no KEGG:lin1253 NR:ns ## KEGG: lin1253 # Name: not_defined # Def: hypothetical protein # Organism: L.innocua # Pathway: not_defined # 1 356 102 448 453 331 51.0 3e-89 MNFEIFDNDECVKVTKWGKGYVFGLTPNYGGMSSPYHGTIFYKNNWETKVKKISPLKYLK FKYDDIQIYELRNWYQYRFEIEFLQKINAKKLADEVMYPKYSYQNGTYRKGVDMRTLNKK WLKENKQFFKNSNRDFYEFELEKRIKNRNGKVVPGIEKFLDYHAINKIPKGIGMVKFQNW VIKNKINMLYYFDYLNMLKDLNIDPTGDANLIIPKDLKKAHDNAVELLNQLKIEQKRKEN EKLQQEYEETLAKRLKLERVVGNYEFKIPRDIIEIIQEGKALHHCVGGSHYIERHSKGQT TIVFVRKKNDTETPFYTLEYQKGHIVQLRGKRNQKASQEVEAASEKWLELIKKEVK >gi|307679010|gb|GL456787.1| GENE 39 30955 - 31227 303 90 aa, chain + ## HITS:1 COG:no KEGG:EF2837 NR:ns ## KEGG: EF2837 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 84 1 89 89 62 48.0 5e-09 MPYVVKVTAYLDQYGNPVSNLKDAKFFEKKAIAESAAFVTDGIIKEVSKVIIMPKKNKIL KTKTEPIKKEKSTKSNQVWMKESKENDSNS >gi|307679010|gb|GL456787.1| GENE 40 31211 - 31303 107 30 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIRIVEVGQVYKLVDANPPAFGKVKKIFGG >gi|307679010|gb|GL456787.1| GENE 41 31306 - 31515 309 69 aa, chain + ## HITS:1 COG:no KEGG:EF2123 NR:ns ## KEGG: EF2123 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 66 1 66 70 112 96.0 4e-24 MKLIYVLSGKEENKNYVKKFVGNYCSFGPKEDAKAFTSEEAEQMRRLLENSVGNAFVIDD DREEENDLY >gi|307679010|gb|GL456787.1| GENE 42 31466 - 31726 353 86 aa, chain + ## HITS:1 COG:no KEGG:EF2121 NR:ns ## KEGG: EF2121 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 13 85 1 73 74 124 91.0 2e-27 MRLLLMMTGRKKMIYIKNFVHDFDSSTITFEVEREGVTNHVETRDTGYGTTSTDINDFTE DWPDSEYNQLEEFLNGCQEIVHSFYR >gi|307679010|gb|GL456787.1| GENE 43 31693 - 31782 70 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSRNSAFILSLKDYIVGVEIIDFVEEEAE >gi|307679010|gb|GL456787.1| GENE 44 31779 - 32081 289 100 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307270093|ref|ZP_07551413.1| ## NR: gi|307270093|ref|ZP_07551413.1| hypothetical protein HMPREF9498_02211 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9498_02211 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9495_01434 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9508_02819 [Enterococcus faecalis TX0312] # 1 100 1 100 100 164 100.0 2e-39 MKQFNIELVRRDKVKVELDPEFFNEEWFAEFRHFFYDYETLEEIAEYITFNVVHNNETFI DGIGIPLRNGKRPYWLKKDEEVNEHVNVIYNSYDTEIEYE >gi|307679010|gb|GL456787.1| GENE 45 32093 - 32332 393 79 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315144724|gb|EFT88740.1| ## NR: gi|315144724|gb|EFT88740.1| conserved domain protein [Enterococcus faecalis TX2141] conserved domain protein [Enterococcus faecalis TX0312] # 1 79 1 79 79 122 100.0 8e-27 MKYKIAVTETLRATRYIEIEYDEDIDELLHDVENSPYEENVASILEELGATILKEDQPIV GKIGDWETESLDYSVMEVK >gi|307679010|gb|GL456787.1| GENE 46 32333 - 32611 438 92 aa, chain + ## HITS:1 COG:no KEGG:EF2120 NR:ns ## KEGG: EF2120 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 92 89 180 180 147 92.0 9e-35 MKFYEMKEPYYALIAAKNEKQCLKLYKDIVCEVEDEKEFFDDMKTIDKYEAFKMLAKSRI EDGGELGAEEALNQLENLETNGEVLLIDSGLL >gi|307679010|gb|GL456787.1| GENE 47 32623 - 33126 559 167 aa, chain + ## HITS:1 COG:no KEGG:EF2118 NR:ns ## KEGG: EF2118 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 115 1 115 184 154 80.0 1e-36 MNKQELIEELECLEVPTNSLDYLKGADYANERAISLAKQLKESKKAVLPKTADDFIEESL GMGSDKVDIIGSADSFSNAMPADEFSLWFKSNRDLFVNALANGYEVEKEPLYHVLLSDKG ATNIGYTFLNLAGTIDFTICKEKVDTLTENQIKAIDERYWPFAVKVE >gi|307679010|gb|GL456787.1| GENE 48 33133 - 33282 159 49 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKDKKFSPLTIICVIIGICWIVSIVGIGYFISHPELIGHWFSRLISGFK >gi|307679010|gb|GL456787.1| GENE 49 33743 - 34264 486 173 aa, chain + ## HITS:1 COG:no KEGG:EF2828 NR:ns ## KEGG: EF2828 # Name: not_defined # Def: ArpU family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 155 1 154 155 117 40.0 2e-25 MVLFDVKKYQIPNPEEIDMKATRKNFETFMTAYGSVREKVGKNRLPKITQSFSLIPSTTN KEYSSDAERFVIEREEYMDEYKELEELFSLGYLAICNPLKNGGTNRRRQIFMLRYVHGIA VQDIAESKYLSKTTVVEESRLALIQFCKETELLIYNDETKPIINEKKTLDSEK >gi|307679010|gb|GL456787.1| GENE 50 34880 - 35299 247 139 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315157454|gb|EFU01471.1| ## NR: gi|315157454|gb|EFU01471.1| hypothetical protein HMPREF9508_02825 [Enterococcus faecalis TX0312] # 1 139 1 139 139 261 100.0 1e-68 MGYSDIKEMFIDAKNLASGANDLQLKSILLDIQGKVYELQEENRELRNQINDLKQADIIK SDLIWSGNVYFYHGDGPYCTNCMDSDSKLIRTALSRINYSEYAKAECPRCDNVVRTAIKV TDKTEEIDQKIKQYIKDLG >gi|307679010|gb|GL456787.1| GENE 51 35336 - 35857 511 173 aa, chain + ## HITS:1 COG:lin1737_1 KEGG:ns NR:ns ## COG: lin1737_1 COG1475 # Protein_GI_number: 16800805 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 1 144 1 141 229 129 48.0 4e-30 MHIEKMKLSDLRPAEYNPRVKLNPGMAEYEKLKQSILEFGFVDPPIFNKNTGNLVGGHQR VTVAKELGLFDEIEVSVVDLPLDKEKVLSIALNKISGNWDEDKLTELLNELTADNLELTG FDNEELENLIEDADIPNFEPGSIDDQGDLTKLEPKFVKCPCCGEEFDLRDVES >gi|307679010|gb|GL456787.1| GENE 52 35844 - 36452 286 202 aa, chain + ## HITS:1 COG:no KEGG:YpsIP31758_2230 NR:ns ## KEGG: YpsIP31758_2230 # Name: not_defined # Def: hypothetical protein # Organism: Y.pseudotuberculosis_IP31758 # Pathway: not_defined # 2 200 4 202 204 251 63.0 1e-65 MLKVDWATHEATKYACTHFHYSKSVPVGKLIKIGAWEDGQFIGVVIFSRGANKCIGSPYG LKQTECCELTRVALTNHKSFVSEILAKAIKFLKEFNPSMQLIVSYADTDQNHHGGIYQAT NWIYTGKTDGERYFIVNGKKTHPKSIHAKYGMGSQRLEFLHKHVDPKASIYESKGKHKYL MPLNKKIRKKIIKLSKPYPKAK >gi|307679010|gb|GL456787.1| GENE 53 36589 - 36777 171 62 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256617869|ref|ZP_05474715.1| ## NR: gi|256617869|ref|ZP_05474715.1| predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis ATCC 4200] # 1 62 22 83 83 92 95.0 1e-17 METFDYEVQQALEKQKIAEENNKIIRAAKAQWISNFKAGQIKLNTVKDLKDLIEIESHLR EL >gi|307679010|gb|GL456787.1| GENE 54 36853 - 37476 485 207 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315157458|gb|EFU01475.1| ## NR: gi|315157458|gb|EFU01475.1| hypothetical protein HMPREF9508_02829 [Enterococcus faecalis TX0312] # 1 207 1 207 207 318 100.0 2e-85 MLKNISIEELIKNFLPVGAFFVSVISLIMAKKANERQLKTEMEISNIEHWEKQKSKIIDL KSEYIANLKSIEICSSNNLLEQKSLYGNSVGVTVSNKKESIDQYKALKAGNLKEIKTIKD LVEEKKIANVRIIEELLPILKNSEIANKLERTQKEIDRNVDQIIYYNSNDEFLKNYLDGT KKLDASINKFSRIIDSYVRSEPNFDEK >gi|307679010|gb|GL456787.1| GENE 55 37525 - 38131 403 202 aa, chain + ## HITS:1 COG:lin1733 KEGG:ns NR:ns ## COG: lin1733 COG5484 # Protein_GI_number: 16800801 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 202 1 217 294 131 42.0 8e-31 MARKRDPRRDQAKEIWLKSNGKKVLKELANELNVSDSQIRKWKSIDKWADELKGNVTNSK SNVTNKGGAPPGNKNAIGNKGNKTASPPKRNKNAVKTGEYETIFADMLSDEEKDIYSTMN DDPFFILEEEIRILKIRQYRMLKRIKDAEVGLNDEEVERLQQLRKVKEPSVIDGKMVTVK REVLKDVQVTRKTFRKLDDILA Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:18:55 2011 Seq name: gi|307679009|gb|GL456788.1| Enterococcus faecalis TX0312 genomic scaffold Scfld158, whole genome shotgun sequence Length of sequence - 3819 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 3417 3077 ## EF2224 cell wall surface anchor family protein - Prom 3463 - 3522 3.9 2 2 Tu 1 . - CDS 3617 - 3817 72 ## gi|315157408|gb|EFU01425.1| conserved domain protein Predicted protein(s) >gi|307679009|gb|GL456788.1| GENE 1 3 - 3417 3077 1138 aa, chain - ## HITS:1 COG:no KEGG:EF2224 NR:ns ## KEGG: EF2224 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 1138 1 1132 1499 1818 96.0 0 MNKAVKNFVSYLMITMLFILNLLPMMNAFAQEVTSDAEKTVEKDGLKVIGKIEDTSSQED IKTVTYEVTNTRDVPIKDLILKQKNTNDSPIKFVLDTLSEERGPTSLEEQAKVETNEKDQ TTDIKLLNLQPNSTRKITINGQITTKASSKLLVSVLIEDNEKGTLVIDLPSKDILADKES VSKEKQETSETKVENQANETVSSTNEMTATTSNETKPEAGKATESIQETALTQATESPEQ PPLKAQPTGPLVPPTPGRGFNTPIYQSVHKGELFSTGNTNLKIANENTAAAQTFLNTRGA SSGYAINNFPLEFADVDNDPNTYNSSRAYIDLNGAKEIAWAGLFWSASRYKGPAYGTNLS DEEISAPVQFTTPNGTVQRVSPQRYHRIDQDATNPGQRFGYNNTGFSNYADVTSILQGDK SATGSYTLADIPMTSSLNGQYQYYNFSGWSLFVVTKDQASKSRAFSIYYGARGNAAGTNN EFTMSNFLTAKQGNLDPIVTWFTVQGDKYWTGDNAQIKNSAGTWANISNTLNPVNNAMNA TVTDNDEHMVDKYPGKFAPDHPNFLDIDIDRMAIPEGVLNAGQNQINFRTTSSGDDYSTN AIGFAVNAETPEFEIKKEIVEPKETYKVGETITYRVSLKNTKTDSEAINSVSKDALDGRL NYLPGSLKIISGPNSGEKTDALGDDQAEYDETNKQIIVRVGNDATATQGGSYKADTAETI YEFKAQINERAKANELVPNSATVEAVDILTSAKVNETSNIVEAKIADEQVTGKLTATKTV NNAKPKLGETIEYTISFRNTIENGVLNKVVITDQLPKGLTYVKDSLTSVGDEPKPTNLKE ANGTITAEYPSLTDTKERSIRFKVIVNEEAKAGETILNKAKVDDTVNPPEEPEVPVVPEA KEGKLTATKTVNNAKPKLGETIEYTISFRNTIENGVLNKVVITDQLPKGLTYVKDSLTSV GDEPQPTSLKETNGTITAEYPSITDTKERSIRFKVIVNEEVKAGETILNKAKVDDTVNPP EEPEVPITPEEPITPRVKEGKLTATKTVNNAKPKLGETIEYTISFRNTIENGVLNKVVIT DQLPKGLTYVKDSLTSVGDEPKPTNLKEANGTITAEYPSITDTKERSIRFKVIVNEEA >gi|307679009|gb|GL456788.1| GENE 2 3617 - 3817 72 66 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315157408|gb|EFU01425.1| ## NR: gi|315157408|gb|EFU01425.1| conserved domain protein [Enterococcus faecalis TX0312] # 1 66 1 66 66 64 100.0 2e-09 NLILQFAFLKQFRTNVIKGKTIKKLLLKLELTYVCIFLGKVNIFASYKTCYLIHDFLLKY RVFFFF Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:19:15 2011 Seq name: gi|307679008|gb|GL456789.1| Enterococcus faecalis TX0312 genomic scaffold Scfld173, whole genome shotgun sequence Length of sequence - 876 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 874 820 ## COG1087 UDP-glucose 4-epimerase Predicted protein(s) >gi|307679008|gb|GL456789.1| GENE 1 1 - 874 820 291 aa, chain + ## HITS:1 COG:lin2620 KEGG:ns NR:ns ## COG: lin2620 COG1087 # Protein_GI_number: 16801682 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Listeria innocua # 1 291 30 320 328 474 75.0 1e-133 VVDNLLTGHRSAVHEQATFYEGDIRDKAFLRSVFEKESIEGVLHFAANSLVGESVEQPLM YFNNNVHGTQIALEVMQEFGVKHIVFSSTAATYGEPKAMPITEETPTNPKNPYGESKLMM EKIMKWCDNAYGMKYVALRYFNVAGAKKDASIGEDHTPETHIVPIILQVALGQRAELSIF GDDYDTPDGTCIRDYVYIEDLIAAHILALEYLKNGGESDVFNLGSNNGYSVKEMLDAARE VTGQEIPATIAPRRAGDPSTLIASSEKAKRVLGWQPEVTEVKDIIATAWQW Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:19:16 2011 Seq name: gi|307679007|gb|GL456790.1| Enterococcus faecalis TX0312 genomic scaffold Scfld181, whole genome shotgun sequence Length of sequence - 603 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - TRNA 2 - 75 71.5 # Arg ACG 0 0 - TRNA 90 - 175 68.1 # Leu TAA 0 0 - TRNA 191 - 262 85.5 # Gly GCC 0 0 - TRNA 267 - 342 98.3 # Thr TGT 0 0 - TRNA 349 - 430 71.9 # Leu TAG 0 0 - TRNA 447 - 519 88.6 # Lys TTT 0 0 - TRNA 526 - 598 88.0 # Val TAC 0 0 - 5S_RRNA 538 - 594 92.0 # AF302131 [D:490..741] # 5S ribosomal RNA # Streptococcus agalactiae # Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus. Predicted protein(s) Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:19:16 2011 Seq name: gi|307679006|gb|GL456791.1| Enterococcus faecalis TX0312 genomic scaffold Scfld224, whole genome shotgun sequence Length of sequence - 559 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 558 196 ## COG1783 Phage terminase large subunit Predicted protein(s) >gi|307679006|gb|GL456791.1| GENE 1 3 - 558 196 185 aa, chain + ## HITS:1 COG:lin0105 KEGG:ns NR:ns ## COG: lin0105 COG1783 # Protein_GI_number: 16799183 # Func_class: R General function prediction only # Function: Phage terminase large subunit # Organism: Listeria innocua # 8 182 35 210 443 125 37.0 5e-29 ALNSNILHVVEKGGRGSGKSSGIAHIIVQLIMRYAVNAVAIRYVDNTIELSIFEQIKWAI EEQGVSKYFKVNKSPMKITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFK TEDDVKTITNSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYK DNPFI Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:19:17 2011 Seq name: gi|307679005|gb|GL456792.1| Enterococcus faecalis TX0312 genomic scaffold Scfld253, whole genome shotgun sequence Length of sequence - 821 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 696 699 ## EF3155 hypothetical protein Predicted protein(s) >gi|307679005|gb|GL456792.1| GENE 1 3 - 696 699 231 aa, chain - ## HITS:1 COG:no KEGG:EF3155 NR:ns ## KEGG: EF3155 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 231 2 229 232 219 55.0 8e-56 MKKKIMASLLVGSAVVGASLAPLSAQAVTTGNTPVQVEFGGGVLPDHEDNTGGSVDPDPT KPNTDFDLLAIPRSFDFPLVKIGEDLTSIKSISPQFRPPSVMVGDVRGTKEGWHVTGEIA EMKNGTDKLDGQFNFGMTPYYAVFNASTGLYGGMASQNGMNITDDPTAPSFIGTNMTIGG GATTLMNATVGQGQGTWSGRIDNMTLNVTTPYQQIKAGAYTGNITWNLVAG Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:19:22 2011 Seq name: gi|307679004|gb|GL456793.1| Enterococcus faecalis TX0312 genomic scaffold Scfld294, whole genome shotgun sequence Length of sequence - 646 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 9 - 645 492 ## EF3075 hypothetical protein Predicted protein(s) >gi|307679004|gb|GL456793.1| GENE 1 9 - 645 492 212 aa, chain + ## HITS:1 COG:no KEGG:EF3075 NR:ns ## KEGG: EF3075 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 212 825 1036 1426 366 95.0 1e-100 MTAMYKEVTAVYPGFYAQFVDEQGKAFTNPLTLSGNYTEFLRKTGTTVFETKGAFYPMVG KRDTTVTNKYKIETTSSVAVPNNYWTAMPADIANRGYALNNLDITNQMKYVDKIETTDTH TTMYDYTGVSDIGGKPNNTSQTELNPIDKTFVKQTDNTFAIKSIWGNGTFSHIVPKMLLL AESGSFSRLFGFDGTPDYKQTVNYKVTRKQVT