Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:19:57 2011 Seq name: gi|307679329|gb|GL456398.1| Enterococcus faecalis TX0411 genomic scaffold Scfld0, whole genome shotgun sequence Length of sequence - 25752 bp Number of predicted genes - 33, with homology - 32 Number of transcription units - 14, operones - 9 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 121 72 ## EFA0074 hypothetical protein 2 1 Op 2 . - CDS 138 - 734 566 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs - Prom 778 - 837 6.4 - Term 793 - 835 9.2 3 2 Tu 1 . - CDS 872 - 1738 540 ## Dred_0847 hypothetical protein - Prom 1923 - 1982 8.9 - Term 2060 - 2110 9.1 4 3 Op 1 . - CDS 2121 - 2363 128 ## gi|229546356|ref|ZP_04435081.1| hypothetical protein HMPREF0349_1573 - Prom 2389 - 2448 5.3 5 3 Op 2 . - CDS 2450 - 2551 60 ## - Term 2822 - 2862 0.2 6 4 Op 1 . - CDS 2958 - 3473 453 ## gi|229546354|ref|ZP_04435079.1| hypothetical protein HMPREF0349_1571 7 4 Op 2 . - CDS 3479 - 3784 343 ## gi|229546353|ref|ZP_04435078.1| hypothetical protein HMPREF0349_1570 - Prom 3877 - 3936 6.7 - Term 3968 - 4020 6.0 8 5 Tu 1 . - CDS 4228 - 5202 942 ## COG3049 Penicillin V acylase and related amidases - Prom 5366 - 5425 9.2 - Term 5528 - 5587 7.3 9 6 Op 1 . - CDS 5666 - 7027 889 ## COG4644 Transposase and inactivated derivatives, TnpA family 10 6 Op 2 . - CDS 6925 - 8121 635 ## pWCFS103_43 putative transposase 11 6 Op 3 . - CDS 8164 - 8637 222 ## COG4644 Transposase and inactivated derivatives, TnpA family - Prom 8744 - 8803 9.6 + Prom 8737 - 8796 7.3 12 7 Op 1 . + CDS 8820 - 9140 308 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs 13 7 Op 2 . + CDS 9137 - 9406 251 ## pWCFS103_42 putative resolvase 14 8 Tu 1 . - CDS 9354 - 9554 147 ## gi|315163197|gb|EFU07214.1| zeta toxin 15 9 Tu 1 . - CDS 9656 - 9964 360 ## SSUBM407_p004 toxin of epsilon-zeta postsegregational killing system - Prom 10116 - 10175 6.5 - Term 10351 - 10390 3.1 16 10 Op 1 . - CDS 10401 - 11300 494 ## COG2017 Galactose mutarotase and related enzymes 17 10 Op 2 . - CDS 11321 - 11593 173 ## SUB0801 hypothetical protein 18 10 Op 3 8/0.000 - CDS 11616 - 13022 1357 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase - Prom 13106 - 13165 3.3 19 10 Op 4 13/0.000 - CDS 13169 - 14875 1478 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 20 10 Op 5 2/0.000 - CDS 14875 - 15192 403 ## COG1447 Phosphotransferase system cellobiose-specific component IIA 21 10 Op 6 3/0.000 - CDS 15220 - 16200 932 ## COG3684 Tagatose-1,6-bisphosphate aldolase 22 10 Op 7 3/0.000 - CDS 16203 - 17135 871 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 23 10 Op 8 4/0.000 - CDS 17146 - 17661 550 ## COG0698 Ribose 5-phosphate isomerase RpiB 24 10 Op 9 . - CDS 17678 - 18103 645 ## COG0698 Ribose 5-phosphate isomerase RpiB - Prom 18195 - 18254 8.8 25 11 Op 1 1/1.000 + CDS 18591 - 19358 712 ## COG1349 Transcriptional regulators of sugar metabolism 26 11 Op 2 . + CDS 19363 - 19863 166 ## COG1011 Predicted hydrolase (HAD superfamily) - Term 20358 - 20392 5.3 27 12 Op 1 . - CDS 20416 - 20724 253 ## SSUBM407_p004 toxin of epsilon-zeta postsegregational killing system 28 12 Op 2 . - CDS 20726 - 20998 415 ## SSUBM407_p003 epsilon-antitoxin 29 12 Op 3 . - CDS 21015 - 21224 241 ## SSUBM407_p002 omega protein - Term 21264 - 21298 1.1 30 12 Op 4 . - CDS 21301 - 22197 804 ## COG1192 ATPases involved in chromosome partitioning - Term 22486 - 22536 6.3 31 13 Op 1 . - CDS 22586 - 23869 917 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 32 13 Op 2 . - CDS 23886 - 24812 802 ## SPN23F_18240 hypothetical protein - Prom 24857 - 24916 8.2 + Prom 24815 - 24874 7.2 33 14 Tu 1 . + CDS 24989 - 25717 683 ## COG2188 Transcriptional regulators Predicted protein(s) >gi|307679329|gb|GL456398.1| GENE 1 1 - 121 72 40 aa, chain - ## HITS:1 COG:no KEGG:EFA0074 NR:ns ## KEGG: EFA0074 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 40 1 40 95 72 100.0 4e-12 MENREKIIQLFKNPLVTGYGIEIMSNGRLYSANFQRYKNR >gi|307679329|gb|GL456398.1| GENE 2 138 - 734 566 198 aa, chain - ## HITS:1 COG:PSLT045 KEGG:ns NR:ns ## COG: PSLT045 COG1961 # Protein_GI_number: 17233496 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Salmonella typhimurium LT2 # 1 184 1 177 186 103 36.0 1e-22 MSIYGYSRVSTSNQDYKTQIQKLERAGAEKIFSEKYTGTKKEGRKELEELLSIVKTGDKV LVTKIDRLARSIVDLNSIISSLNNSGVTITFLDNALTFEPNKSDSMQTLMMNMLGSFAQF ERDLIVTRTQEGKQWHRANNKNYREGRPKRVLNDKYKHALELMETNSMREVERKTGISLS TLKRIKKQAKEEQLLSEK >gi|307679329|gb|GL456398.1| GENE 3 872 - 1738 540 288 aa, chain - ## HITS:1 COG:no KEGG:Dred_0847 NR:ns ## KEGG: Dred_0847 # Name: not_defined # Def: hypothetical protein # Organism: D.reducens # Pathway: not_defined # 5 255 6 251 269 127 35.0 5e-28 MKETVSVFMDESGKNKNEISLIGSVVVPNNFYCSKSVMELNDKLKREEISFHLTDYKKSQ LKDYLNLFDLFVSNENLLRFNVVAFKRGRFSNHMLKGKIDDMVYSKIPERSIYGSLRGYS SFTEVEANIYIEYATDYEKRGLDKLIKNQLNIHSLYRYDHFKVVKAKLIYKNTEIGLEFT DACLGVLRNIIENRDVKTTSSSKVSRTLIYKKQLVYELINRHRNFFEHIDLFELDDKGLL ERIDMRKYINLFQSKYLKEKELYGEVAEVYGDSKYHVKRKPRKIPYRQ >gi|307679329|gb|GL456398.1| GENE 4 2121 - 2363 128 80 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229546356|ref|ZP_04435081.1| ## NR: gi|229546356|ref|ZP_04435081.1| hypothetical protein HMPREF0349_1573 [Enterococcus faecalis TX1322] hypothetical protein HMPREF0345_0675 [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis ATCC 4200] conserved hypothetical protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] conserved domain protein [Enterococcus faecalis TX4248] conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX0635] hypothetical protein HMPREF0345_0675 [Enterococcus faecalis ATCC 29200] hypothetical protein HMPREF0349_1573 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] conserved hypothetical protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX4248] conserved domain protein [Enterococcus faecalis TX0635] conserved domain protein [Enterococcus faecalis TX4000] conserved domain protein [Enterococcus faecalis TX0027] conserved domain protein [Enterococcus faecalis TX2141] conserved domain protein [Enterococcus faecalis TX0043] conserved domain protein [Enterococcus faecalis TX0312] conserved domain protein [Enterococcus faecalis TX0645] conserved domain protein [Enterococcus faecalis TX0630] hypothetical protein HMPREF9520_00209 [Enterococcus faecalis TX1467] # 1 80 1 80 80 144 100.0 2e-33 MQIYAHERGNPYGCTYFISFHEIELVILLVWKDNFFTYNKQEVENNLNKMADVSTSAKRT IYQFIEKTNSLLYLSYKELH >gi|307679329|gb|GL456398.1| GENE 5 2450 - 2551 60 33 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLYGLEGAIEGVNDICLSQETKEELKAYYNSLK >gi|307679329|gb|GL456398.1| GENE 6 2958 - 3473 453 171 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229546354|ref|ZP_04435079.1| ## NR: gi|229546354|ref|ZP_04435079.1| hypothetical protein HMPREF0349_1571 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis JH1] hypothetical protein HMPREF9509_00006 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9512_00796 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9504_01262 [Enterococcus faecalis TX0102] hypothetical protein HMPREF0349_1571 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis JH1] hypothetical protein HMPREF9509_00006 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9504_01262 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9512_00796 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9496_01851 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9501_01699 [Enterococcus faecalis TX0027] hypothetical protein HMPREF9495_00258 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9513_00276 [Enterococcus faecalis TX0645] hypothetical protein HMPREF9511_01565 [Enterococcus faecalis TX0630] conserved domain protein [Enterococcus faecalis TX1467] # 1 171 5 175 175 258 100.0 1e-67 MRNELKKDQNQAYEEEKIKYYQQQFNELFNDSNNQMLKETITGSQLLTLFESFIEYKSER RNRDENIMNRISNLFEILNGAIVLWSNELEKKVDDLFSVREEALKETVSQSDIEQLASDA EELDKLGVSYAYVEKITHKVKLVAKAVKFIYEMPQDTLVREISIASTKQEE >gi|307679329|gb|GL456398.1| GENE 7 3479 - 3784 343 101 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229546353|ref|ZP_04435078.1| ## NR: gi|229546353|ref|ZP_04435078.1| hypothetical protein HMPREF0349_1570 [Enterococcus faecalis TX1322] hypothetical protein HMPREF0345_0672 [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis CH188] conserved hypothetical protein [Enterococcus faecalis X98] hypothetical protein HMPREF9498_00518 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9509_00007 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9512_00797 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9504_01261 [Enterococcus faecalis TX0102] hypothetical protein HMPREF0345_0672 [Enterococcus faecalis ATCC 29200] hypothetical protein HMPREF0349_1570 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis CH188] conserved hypothetical protein [Enterococcus faecalis X98] hypothetical protein HMPREF9509_00007 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9498_00518 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9504_01261 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9512_00797 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9496_01850 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9501_01700 [Enterococcus faecalis TX0027] hypothetical protein HMPREF9495_00257 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9503_00627 [Enterococcus faecalis TX0043] hypothetical protein HMPREF9508_00427 [Enterococcus faecalis TX0312] hypothetical protein HMPREF9513_00275 [Enterococcus faecalis TX0645] hypothetical protein HMPREF9511_01564 [Enterococcus faecalis TX0630] hypothetical protein EF62_0880 [Enterococcus faecalis 62] # 1 101 1 101 101 173 100.0 5e-42 MKKVCAILMISASVLGMVPSNAPIFTAEINYAHENELQMNPFVIAFIDKVKQNLVLDDNY HTVKLTEAATDEKIQKLYAEATALLVKQSSVLSSEEKQIIC >gi|307679329|gb|GL456398.1| GENE 8 4228 - 5202 942 324 aa, chain - ## HITS:1 COG:BS_yxeI KEGG:ns NR:ns ## COG: BS_yxeI COG3049 # Protein_GI_number: 16081005 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Penicillin V acylase and related amidases # Organism: Bacillus subtilis # 1 305 1 309 328 177 31.0 2e-44 MCTAITYVSKDHYFGRNFDYEISYNEVVTITPRNYKFSFREVGNLDHHFAIIGIAAGIAD YPLYYDAINEKGLGMAGLNFSGYADYKKIEEGKENVSPFEFIPWVLGQCSTVDEAKKLLK NLNLVNINFSDELPLSPLHWLLADKEQSIVVESTKEGLRVFDNPVGVLTNNPTFDYQLFN LNNYRVLSTRTPKNNFSDQIELDIYSRGMGGIGLPGDLSSVSRFVKATFTKLNSVSRSSE YESISQFFHILSSVEQQKGLCDVGDEKYEYTIYSSCCNLEKGIYYYRTYDNSQITAVDMN KENLEKDSLIVYPMVETQQINYAN >gi|307679329|gb|GL456398.1| GENE 9 5666 - 7027 889 453 aa, chain - ## HITS:1 COG:YPCD1.90c KEGG:ns NR:ns ## COG: YPCD1.90c COG4644 # Protein_GI_number: 16082773 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, TnpA family # Organism: Yersinia pestis # 13 451 324 762 771 424 45.0 1e-118 MARIEKQDNKDKIIVSKLRKTRENKEDKQFKNRVKALMPKIDLPDLLLEVNQQLDLTSCF HHINESNTRMDHLDISVLAVLLAEACNIGFSPVSKEGIESLKYDRLMYVNHQYVRLDTLS ATNKKIISAYKKLPISLVWGNNQMASADGIRYTTPQRSLYSRSNPKYFGRSRGVTFYNFV SDQYIGFHGMVVPGTLRDSLYLLDGFLNQTSGLEPKQIMTDTAGYSDLVFGLFGLLGFQF SPRIANNHGTKLWRIDLTADYKMLNEVSQNKINTTRIEKNWDEILRVAGSLKSGKVNATE LTKALQRNGQPTELGKTIIEYGKVYKTKHQLRYISDEIYARQILEQLNKGEARHTLCRHI FYGKKGKLYQTYIDGMEEQLTALSIVTNAIIYWNTLYLERVIDQMRVEGFDCSEEKINKL SPLLVEHINFVGKYSFRYDPSLKNGHLRPLNTQ >gi|307679329|gb|GL456398.1| GENE 10 6925 - 8121 635 398 aa, chain - ## HITS:1 COG:no KEGG:pWCFS103_43 NR:ns ## KEGG: pWCFS103_43 # Name: tnpA # Def: putative transposase # Organism: L.plantarum # Pathway: not_defined # 3 360 179 536 997 390 55.0 1e-107 MKQLSLIPSEEESEKLLNLLSLMGVPVQGAFTKMDILRAPLIDEGRKEITRGFHRLKEFQ QFHTSEWDFSTIPEGKVKHLATYAFKAKSSLIQRMSIQKKLALLVAFVYEYEKIATDELL TALIKYYESIFRRAKNKESKERLRTLKDLDRAAFTLSEIVELLLDDSIEIDCLRSRVFDQ YPAEDIVNAVFQVKKLVKNEQEPIAIAELIQSYRKIRKFIALIIETLTIENGHYDEDCMA VWCLIQRRIPKPITFRQFESVENHIPKKWAYYIHYNPNEVNQSMLILGIELLIQSLNKHD IFVPKSEKFIDPMSCLISKETWEQQKESLLSQLELPSSSVEAIKQLEEDLSLSYNETVKN GPILKWLELKNRITKIKLSCLNSEKHVKIRKISSSKIA >gi|307679329|gb|GL456398.1| GENE 11 8164 - 8637 222 157 aa, chain - ## HITS:1 COG:YPCD1.90c KEGG:ns NR:ns ## COG: YPCD1.90c COG4644 # Protein_GI_number: 16082773 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, TnpA family # Organism: Yersinia pestis # 2 155 9 164 771 87 35.0 1e-17 MKKEKIFGTFVGAPSEEQLQLYFQLTDFDKEIINEMRLPSTKLGFAVQLGTVRFLGTFFT DFSKIPLEVIIYLANQLSIDPREFDSYSRKMTISQHAQLIKERYSYRNFQDSDCQKFLYD WLLSRASHTTETTEMLSDMLLKKCLEEKILLPGVSIF >gi|307679329|gb|GL456398.1| GENE 12 8820 - 9140 308 106 aa, chain + ## HITS:1 COG:XF2028 KEGG:ns NR:ns ## COG: XF2028 COG1961 # Protein_GI_number: 15838622 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Xylella fastidiosa 9a5c # 1 102 1 102 185 94 43.0 6e-20 MIIGYARVSKDDQNLGRQIDQLKNFGAEKIIQEKYTGIKRNRPGIEQLLQTIRKGDIVVV ESISRLGRNTLDILNLIQELDQKQIQFVSLKENMNTSTPTGRPCYK >gi|307679329|gb|GL456398.1| GENE 13 9137 - 9406 251 89 aa, chain + ## HITS:1 COG:no KEGG:pWCFS103_42 NR:ns ## KEGG: pWCFS103_42 # Name: tnpR2 # Def: putative resolvase # Organism: L.plantarum # Pathway: not_defined # 1 87 107 193 195 114 78.0 1e-24 MMSVIAELERNLLADRVRKGIEASKKRGVAIGRPKIPQEKLDIAVRMYKSGDYSVKEIIE TNQISTGTFYREINRLKLRKLNKRTEQLT >gi|307679329|gb|GL456398.1| GENE 14 9354 - 9554 147 66 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315163197|gb|EFU07214.1| ## NR: gi|315163197|gb|EFU07214.1| zeta toxin [Enterococcus faecalis TX0645] # 1 66 153 218 218 140 98.0 2e-32 MVQNQHQETPEFKAIQQKMESLQPPTPPIRGHWNIHTENSGRKPNNYWAIKLVVRFFCLA FSILVD >gi|307679329|gb|GL456398.1| GENE 15 9656 - 9964 360 102 aa, chain - ## HITS:1 COG:no KEGG:SSUBM407_p004 NR:ns ## KEGG: SSUBM407_p004 # Name: not_defined # Def: toxin of epsilon-zeta postsegregational killing system # Organism: S.suis_BM407 # Pathway: not_defined # 1 97 114 210 287 176 92.0 2e-43 MIEGTGRTTDVPIQTATMLESKGYETKMYVTAVPKIESYLGTIERYETMYADDPMTARAT PKQAHDIVVKNLPINLETLHKTGLFSDIRLYNREGVRNSIQA >gi|307679329|gb|GL456398.1| GENE 16 10401 - 11300 494 299 aa, chain - ## HITS:1 COG:CAC3032 KEGG:ns NR:ns ## COG: CAC3032 COG2017 # Protein_GI_number: 15896283 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Clostridium acetobutylicum # 1 297 1 296 298 173 34.0 3e-43 MTIELKNEYLTVQFKTLGGQLTSIKDKDGIEYLWQADPNYWNGQAPILFPICGSLRNDWA IYRPQERLFFTGLIRRHGFVRKEEFILEEVNDNSVTFSIKPNAEMLDNYLYQFELRVVYT LNGKSIRTEFQVTNLEMEKTMPYFIGAHPAFNCPLVEGENYEDYYIEFSEVESCSIPKSF PETGLLDLQDRTPFLENQKILDLDYSLFSHDAITLDQLKSRSVTLRSRKSGKGLRVDFDD FPNLILWSTTNKSPFIALEPWSGLSTSLEEGNFLEDKRQVTKISPQETSRKIYDITILN >gi|307679329|gb|GL456398.1| GENE 17 11321 - 11593 173 90 aa, chain - ## HITS:1 COG:no KEGG:SUB0801 NR:ns ## KEGG: SUB0801 # Name: not_defined # Def: hypothetical protein # Organism: S.uberis # Pathway: not_defined # 5 90 4 90 92 80 45.0 2e-14 MLSDTLEKVQHLFRPNFEKVYIVSFEDCPMIPELEATPLLKCGKWYVSTGKEWICHSDLE LSAFEWEFLQSLDVEIRETIHFEVNYLPFQ >gi|307679329|gb|GL456398.1| GENE 18 11616 - 13022 1357 468 aa, chain - ## HITS:1 COG:SP1184 KEGG:ns NR:ns ## COG: SP1184 COG2723 # Protein_GI_number: 15901049 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Streptococcus pneumoniae TIGR4 # 1 468 1 468 468 897 94.0 0 MTKTLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNYWYTAEPASDFYHKYPVDL ELAEKYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHNLFAECHKRHVEPFVTLHHFDTP EVLHSDGDFLNRENIEHFVDYAAFCFEEFPEVNYWTTFNEIGPIGDGQYLVGKFPPGIQY DLAKVFQSHHNMMVSHARAVKLYKDKGYKGEIGVVHALPTKYPYDPENPADVRAAELEDI IHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALEAAKDLNDFLGINYYM SDWMQAFDGETEIIHNGKGEKGSSKYQIKGVGRRIAPDYVPRTDWDWIIYPEGLYDQIMR VKNDYPNYKKIYITENGLGYKDEFVDNTVYDDGRIDYVKKHLEVLSDAIADGANVKGYFI WSLMDVFSWSNGYEKRYGLFYVDFDTQERYPKKSAHWYKKVAETQVIE >gi|307679329|gb|GL456398.1| GENE 19 13169 - 14875 1478 568 aa, chain - ## HITS:1 COG:SPy1917 KEGG:ns NR:ns ## COG: SPy1917 COG1455 # Protein_GI_number: 15675726 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Streptococcus pyogenes M1 GAS # 1 568 1 564 565 903 82.0 0 MHKLIELIEKGKPFFEKISRNIYLRAIRDGFIAGMPVILFSSIFILIAYVPNAWGFHWSK DIETFLMTPYSYSMGILAFFVGGTTAKALTDSMNRDLPATNQINFLSTMLASMVGFLLMA AEPAKEGGFLTAFTGTKGLLTAFIAAFVTVNVYKVCVKNNVTIRMPEEVPPNISQVFKDL IPFTVSVVLLYGFELIVKGTLGVTVAESIGTLLAPLFSAADGYLGITLIFGAYAFFWFVG IHGPSIVEPAIAAITYANIDANLHLIQAGQHADKVITSGTQMFIVTMGGTGATLIVPFLF MWICKSERNRAIGRASVVPTFFGVNEPILFGAPIVLNPIFFVPFIFAPIVNVWIFKFFVD TLNMNSFSANLPWVTPGPLGIVLGTNFQVLSFILAGLLVVVDTIIYYPFVKVYDEQILEE ERSGKTNDALKEKVAANFNTAKADAVLGKAGVAKEDVAANNNITKETNVLVLCAGGGTSG LLANALNKAAAEYNVPVKAAAGGYGAHREMLPEFDLVILAPQVASNFDDMKAETDKLGIK LAKTEGAQYIKLTRDGQGALAFVQQQFD >gi|307679329|gb|GL456398.1| GENE 20 14875 - 15192 403 105 aa, chain - ## HITS:1 COG:SP1186 KEGG:ns NR:ns ## COG: SP1186 COG1447 # Protein_GI_number: 15901051 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIA # Organism: Streptococcus pneumoniae TIGR4 # 1 105 1 105 105 154 82.0 6e-38 MNREEMTLLGFEIVAYAGDARSKLLEALKAAENGDFAKADSLVVEAGSCIAEAHNSQTAM LAREASGEELPYSVTMMHGQDHLMTTVLLKDVIHHLIELYKRGAK >gi|307679329|gb|GL456398.1| GENE 21 15220 - 16200 932 326 aa, chain - ## HITS:1 COG:SP1190 KEGG:ns NR:ns ## COG: SP1190 COG3684 # Protein_GI_number: 15901055 # Func_class: G Carbohydrate transport and metabolism # Function: Tagatose-1,6-bisphosphate aldolase # Organism: Streptococcus pneumoniae TIGR4 # 1 326 1 326 326 541 86.0 1e-154 MILTEQKRKSLEKISDKNGVISALAFDQRGALKRLMAQYQDTEPTVAQMEELKVLVAEEL TKYASSMLLDPEYGLPATKALDKEAGLLLAYEKTGYDTSSTKRLPDCLDVWSAKRIKEQG ADAVKFLLYYDVDSSDELNQQKQAYIERVGSECVAEDIPFFLEILAYDEEISDAGSVEYA KVKPRKVIEAMKVFSDPRFNIDVLKVEVPVNVKYVEGFADGEVVYSKAEAADFFKAQEEA TNLPYIYLSAGVSAKLFQETLQFAHDSGAKFNGVLCGRATWAGSVEPYIKEGEKAAREWL RTTGFENIDELNKVLVKTASPWTDKV >gi|307679329|gb|GL456398.1| GENE 22 16203 - 17135 871 310 aa, chain - ## HITS:1 COG:SP1191 KEGG:ns NR:ns ## COG: SP1191 COG1105 # Protein_GI_number: 15901056 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Streptococcus pneumoniae TIGR4 # 1 310 1 309 309 399 67.0 1e-111 MILTVTLNPSVDISYPLETLKIDTVNRVKDVSKTAGGKGLNVTRVLYESGDKVTATGFLG GKIGEFIESELEQSPVSPAFYKISGNTRNCIAILHEGNQTEILEQGPTISHEEAEGFLDH YSNLIKQSEVVTISGSLPSRLPNDYYEKLIQLASDEGVAVVLDCSGAPLETVLKSSAKPT AIKPNNEELSQLLGKEVTKDIEELKDVLKESLFSGIEWIVVSLGRNGAFAKHGDVFYKVD IPDIPVVNPVGSGDSTVAGIASALNSKKSDADLLKHAMTLGMLNAQETMTGHVNMTNYET LNSQIGVKEV >gi|307679329|gb|GL456398.1| GENE 23 17146 - 17661 550 171 aa, chain - ## HITS:1 COG:SP1192 KEGG:ns NR:ns ## COG: SP1192 COG0698 # Protein_GI_number: 15901057 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Streptococcus pneumoniae TIGR4 # 1 171 1 171 171 311 88.0 3e-85 MRIAIGCDHIVTDEKMAVSEFLKSKGHEVLDFGTYDHARTHYPIYGKKVGEAVVSGQADL GVCICGTGVGINNAVNKVPGVRSALVRDMTSAIYAKEELNANVIGFGGMITGGLLMNDII EAFIEAEYKPTEENKKLIAKIEHVETHNAHQADEDFFTEFLERWDRGDYHD >gi|307679329|gb|GL456398.1| GENE 24 17678 - 18103 645 141 aa, chain - ## HITS:1 COG:SP1193 KEGG:ns NR:ns ## COG: SP1193 COG0698 # Protein_GI_number: 15901058 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Streptococcus pneumoniae TIGR4 # 1 140 1 140 141 215 83.0 2e-56 MAIVVGADLKGTRLKDIVKNFLVEEGFEVIDVTKDGQDFVDVTLAVASEVNKDEQNLGIV IDAYGAGSFMVATKIKGMVAAEVSDERSAYMTRGHNNSRMITVGAEIVGDELAKNIAKGF VNGKYDGGRHQIRVDMLNKMC >gi|307679329|gb|GL456398.1| GENE 25 18591 - 19358 712 255 aa, chain + ## HITS:1 COG:SPy1924 KEGG:ns NR:ns ## COG: SPy1924 COG1349 # Protein_GI_number: 15675732 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Streptococcus pyogenes M1 GAS # 1 255 1 256 257 292 63.0 4e-79 MNKKRRLEKILDMLKIDGTITIKEIIDELDISDMTARRDLDALEADGLLTRIHGGAQLLS SKKPLEKTHIEKKSLNTKEKIDIAKKACSLIKDGDTIFIGPGTTLEQLALELKGRKGYKI RVITNSLPVFLILNDSETIDLLLLGGEYREITGAFVGSMASTNLKAMRFAKAFVSANAVT HNSIATYSDKEGVIQQLALNNAVEKFLLVDSTKFDRYDFFNFYNLDQLDTIITDNQISPQ NLEEFSQYTTILKAD >gi|307679329|gb|GL456398.1| GENE 26 19363 - 19863 166 166 aa, chain + ## HITS:1 COG:SPy0596 KEGG:ns NR:ns ## COG: SPy0596 COG1011 # Protein_GI_number: 15674680 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Streptococcus pyogenes M1 GAS # 6 151 5 152 300 127 40.0 8e-30 MTYKNIVFDLDDTLYDQQLPFKRSVEKCFPTIDIQQIDNIYKRFRYWSNVAFPKYTKKLI SIEQLRIFRCQKTMEEFGIDSISRTEALDFQADYELDQITMIPEIHQLLLALHKNRIPIG ILTNGPVDLQSRKLQNIGAYQYFEKQNIIISSPLTEELQKIAMKVM >gi|307679329|gb|GL456398.1| GENE 27 20416 - 20724 253 102 aa, chain - ## HITS:1 COG:no KEGG:SSUBM407_p004 NR:ns ## KEGG: SSUBM407_p004 # Name: not_defined # Def: toxin of epsilon-zeta postsegregational killing system # Organism: S.suis_BM407 # Pathway: not_defined # 1 100 1 100 287 152 78.0 4e-36 MANITDFTEKQFEDRLEKNVERLTKNRLAVESPTAFLLGGQPGSGKTSLRSAISEETQGN VVIIDNDTFKQQHPNFDELVKLYEKDVVKHATSYSNQLVKLN >gi|307679329|gb|GL456398.1| GENE 28 20726 - 20998 415 90 aa, chain - ## HITS:1 COG:no KEGG:SSUBM407_p003 NR:ns ## KEGG: SSUBM407_p003 # Name: not_defined # Def: epsilon-antitoxin # Organism: S.suis_BM407 # Pathway: not_defined # 1 90 1 90 90 112 78.0 4e-24 MAVTYEKTFEIEIINELSASVYNRVLNYVLNHELDTKNTRLLEVNLLNQLEVAQEVDLFQ QPFEELQAIHEYWRSMNQYSKQILTKEKVA >gi|307679329|gb|GL456398.1| GENE 29 21015 - 21224 241 69 aa, chain - ## HITS:1 COG:no KEGG:SSUBM407_p002 NR:ns ## KEGG: SSUBM407_p002 # Name: not_defined # Def: omega protein # Organism: S.suis_BM407 # Pathway: not_defined # 1 69 3 71 71 112 95.0 4e-24 MGNLGAQKAKRNDTPISAKKDIMVDKTVRVRADLHHIIKIETAKNGGNVKEVMDQDLEEY IRKYLPDKL >gi|307679329|gb|GL456398.1| GENE 30 21301 - 22197 804 298 aa, chain - ## HITS:1 COG:pli0069 KEGG:ns NR:ns ## COG: pli0069 COG1192 # Protein_GI_number: 18450351 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Listeria innocua # 30 298 13 288 293 127 31.0 3e-29 MIQYYYTKKEWGVVMEKEELKILEELRRILNSKNEAIVILNNYFKGGVGKSKLSTMFAYL TDKLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGNLTSSIIHLTDNLDLIP GTFDLMLLPKLTRSWTFENESRLLATLLAPLKSDYDLIIIDTVPTPSVYTNNAIVASDYV MIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIKSNLEELYKQH KEDNLVFQNIIKRSNKVSTWSKNGITEHKGYDKKVLSMYENVFFEMVERIIQLENKKE >gi|307679329|gb|GL456398.1| GENE 31 22586 - 23869 917 427 aa, chain - ## HITS:1 COG:BS_licC KEGG:ns NR:ns ## COG: BS_licC COG1455 # Protein_GI_number: 16080909 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Bacillus subtilis # 3 416 10 436 452 346 42.0 6e-95 MMDKVQVFAAKISNQRHLIALRDGMASVMPLIIIGSIFMLIGNFPVPAFTDWLDNIGLLQ FFNKASDSTFGMIGLGVTFSIAYNLAKRYKVDALSAGLIAISAFVILTPILQSEAGNGFP TKYLGSSGLFVGIIVSIVSTEMFQWFVKRNITIKMPDTVPPNVSRAFTAIVPGFFIILAW FFILIFLHYTGIDDIHALIANTIAKPLGLLTKTLPGIIFVIFVQCFFWMFGIHGAQVTGP IIEPLLLQNSDANRIAYQAGQELPNIITYEFLYNFVFTGGAGCVIALAILIFLFSKSKEN KTLGKLSIAPVSFQVAEPLLFGFPTILNFKMVIPFVTAPVVTTLITYYAMKFGIVSKPIG AVVPWTTPPIISGFLATGGKLSGALIQIVTIAVNMLIYYPFFKLDDNEKLKVERSLAERN TASSDLN >gi|307679329|gb|GL456398.1| GENE 32 23886 - 24812 802 308 aa, chain - ## HITS:1 COG:no KEGG:SPN23F_18240 NR:ns ## KEGG: SPN23F_18240 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_ATCC700669 # Pathway: not_defined # 4 305 2 295 298 290 50.0 5e-77 MNQKRLLDFSASDFLSVRPMELKQAILASEGRTVMAENVASSSNFLAGVTNAELERAAGA DLILFNALDLFDPQIVGIPDNIEESPVEWIKKAIGRPIGVNLEPVDIKASMNEARSEISI GRIVSPKTLKQANKLGFNFICLTGNPGTGVTNDAIKHAIELSREHFDGLIIAGKMHGAGV DEPVMNLEIAKQFVETGIDMLLVPAPYTVPYFMEQDLKEIADYVRSHNKGKSIEDKVLLL TANGTSQDSSDSDTIKKIALASKACGADIQHIGDSLNGICLPENIFALGQAIRGYRHQMV MLGKSNLR >gi|307679329|gb|GL456398.1| GENE 33 24989 - 25717 683 242 aa, chain + ## HITS:1 COG:SPy0715 KEGG:ns NR:ns ## COG: SPy0715 COG2188 # Protein_GI_number: 15674773 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 9 220 6 218 240 85 31.0 6e-17 MLDNTNKLPLYVQLVNTLLEQIQNDMSPNDKLPTEKEICEEYSVSRTTVRLTMNELENRG YIYRIQGKGSFVSSIKKNTINSFFDLDFRAHYEGMNSEELTSELIFFKKEAAQLSLRQKM GLQQEHNIIKIQVLRKLLDIPVALETIILKNQYFNFINEAKLKEEGVDKLINTIDIPLKI VEEKYKARRLNPDEIDLLQSKDEAALVVTKSLYNTNNELIIISERKILTSKLSYQNFIQK EN Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:20:58 2011 Seq name: gi|307679328|gb|GL456399.1| Enterococcus faecalis TX0411 genomic scaffold Scfld1, whole genome shotgun sequence Length of sequence - 764 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 4 - 763 798 ## COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase] Predicted protein(s) >gi|307679328|gb|GL456399.1| GENE 1 4 - 763 798 253 aa, chain + ## HITS:1 COG:STM4446 KEGG:ns NR:ns ## COG: STM4446 COG1921 # Protein_GI_number: 16767692 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine synthase [seryl-tRNASer selenium transferase] # Organism: Salmonella typhimurium LT2 # 1 252 20 271 372 263 58.0 2e-70 MTILGVSKVSEAVLAAQRFGGEHFFEMSELSVQTGAFLANLLKVEDAQIVSSASAGIAQS VAALIGKGSLYHAYHPYTEKIEQREIVLPKGHNVDYGTPVEVMVAQGGGQVVEAGYANMC SPEHVEMMISEKTAAILYIKSHHTVQKSMLTVAEAAKVAQRHKVPLIVDAAAEEDLFKYT EAGADLVIYSGAKAIEGPSAGLVVGKKEYIDWVRLQGKGIGRAMKIGKDNILGFTQAVEE YLAHGSESGASMQ Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:21:00 2011 Seq name: gi|307679327|gb|GL456400.1| Enterococcus faecalis TX0411 genomic scaffold Scfld4, whole genome shotgun sequence Length of sequence - 528 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - SSU_RRNA 1 - 528 100.0 # GQ022127 [D:1..1381] # 16S ribosomal RNA # uncultured bacterium # Bacteria; environmental samples. Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:21:00 2011 Seq name: gi|307679326|gb|GL456401.1| Enterococcus faecalis TX0411 genomic scaffold Scfld7, whole genome shotgun sequence Length of sequence - 571 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 490 317 ## MCCL_plsB0037 transposase - Prom 510 - 569 2.1 Predicted protein(s) >gi|307679326|gb|GL456401.1| GENE 1 1 - 490 317 163 aa, chain - ## HITS:1 COG:no KEGG:MCCL_plsB0037 NR:ns ## KEGG: MCCL_plsB0037 # Name: tnp # Def: transposase # Organism: M.caseolyticus # Pathway: not_defined # 1 163 1 163 319 195 56.0 6e-49 MTYKHLTIDELTMIESYYLQHNKPVEIANRMGRAIQTIYNVVNKFKQGKTALDYWHQYKE NKKKCGRKVIQLPAHEVDYIKEKVTLGWTPDVIIGRKERPVSCGMRTLYRLFSKGIFDID TLPMKGKRKPNGHQEKRGKQQYQRSIHDRPDNYPDFNSEFGHL Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:21:18 2011 Seq name: gi|307679325|gb|GL456402.1| Enterococcus faecalis TX0411 genomic scaffold Scfld8, whole genome shotgun sequence Length of sequence - 52981 bp Number of predicted genes - 47, with homology - 46 Number of transcription units - 25, operones - 12 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 85 80 ## 2 1 Op 2 13/0.000 - CDS 97 - 948 1038 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 3 1 Op 3 13/0.000 - CDS 948 - 1697 1034 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 4 1 Op 4 9/0.000 - CDS 1721 - 2215 691 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 5 1 Op 5 3/0.000 - CDS 2235 - 2636 401 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 6 1 Op 6 . - CDS 2708 - 5521 2164 ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain - Prom 5554 - 5613 8.6 - Term 5596 - 5639 9.6 7 2 Op 1 . - CDS 5643 - 6170 545 ## COG0406 Fructose-2,6-bisphosphatase 8 2 Op 2 . - CDS 6236 - 7684 1691 ## COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases - Prom 7708 - 7767 3.1 9 2 Op 3 . - CDS 7781 - 8446 636 ## EF2984 transcriptional regulator, putative - Prom 8510 - 8569 7.4 - Term 8777 - 8812 4.4 10 3 Op 1 36/0.000 - CDS 8827 - 10035 1484 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 11 3 Op 2 24/0.000 - CDS 10032 - 10706 352 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 12 3 Op 3 . - CDS 10699 - 11865 1521 ## COG0845 Membrane-fusion protein - Prom 11906 - 11965 10.0 - Term 11986 - 12024 3.1 13 4 Op 1 3/0.000 - CDS 12037 - 12336 409 ## COG0607 Rhodanese-related sulfurtransferase 14 4 Op 2 3/0.000 - CDS 12329 - 13978 2222 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases 15 4 Op 3 . - CDS 13979 - 14293 407 ## COG0607 Rhodanese-related sulfurtransferase - Prom 14322 - 14381 3.8 + Prom 14376 - 14435 5.6 16 5 Tu 1 . + CDS 14462 - 14722 381 ## COG1937 Uncharacterized protein conserved in bacteria + Term 14725 - 14776 11.2 - Term 14713 - 14762 10.0 17 6 Op 1 . - CDS 14768 - 16027 1493 ## COG0477 Permeases of the major facilitator superfamily - Term 16064 - 16109 5.5 18 6 Op 2 . - CDS 16124 - 17332 1302 ## COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase - Prom 17472 - 17531 9.9 + Prom 17419 - 17478 6.6 19 7 Tu 1 . + CDS 17504 - 19129 1615 ## COG2508 Regulator of polyketide synthase expression 20 8 Op 1 4/0.000 - CDS 19247 - 20032 911 ## COG3257 Uncharacterized protein, possibly involved in glyoxylate utilization 21 8 Op 2 4/0.000 - CDS 20054 - 21277 1346 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases - Prom 21300 - 21359 6.1 22 8 Op 3 2/0.200 - CDS 21459 - 22823 1680 ## COG0044 Dihydroorotase and related cyclic amidohydrolases 23 8 Op 4 . - CDS 22824 - 24320 1380 ## COG1953 Cytosine/uracil/thiamine/allantoin permeases - Prom 24510 - 24569 6.5 - Term 24851 - 24902 12.2 24 9 Op 1 2/0.200 - CDS 24915 - 25427 623 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 25 9 Op 2 . - CDS 25446 - 25898 581 ## COG1846 Transcriptional regulators - Prom 26034 - 26093 13.2 + Prom 26010 - 26069 13.7 26 10 Tu 1 . + CDS 26091 - 26783 534 ## EF3003 putative lipoprotein + Term 26798 - 26852 15.1 - Term 26776 - 26848 19.1 27 11 Tu 1 . - CDS 26948 - 28567 1609 ## COG0659 Sulfate permease and related transporters (MFS superfamily) - Prom 28776 - 28835 5.8 + Prom 28494 - 28553 8.4 28 12 Tu 1 . + CDS 28786 - 29853 993 ## COG3049 Penicillin V acylase and related amidases + Term 29859 - 29915 18.1 - Term 29843 - 29903 18.1 29 13 Op 1 . - CDS 29905 - 30561 579 ## EF3006 hypothetical protein 30 13 Op 2 . - CDS 30586 - 31779 721 ## EF3007 hypothetical protein - Prom 31919 - 31978 11.9 31 14 Tu 1 . - CDS 31996 - 33651 1401 ## COG2508 Regulator of polyketide synthase expression + Prom 33691 - 33750 4.6 32 15 Op 1 . + CDS 33782 - 34648 517 ## EF3009 hypothetical protein 33 15 Op 2 . + CDS 34626 - 36185 1804 ## COG0074 Succinyl-CoA synthetase, alpha subunit 34 15 Op 3 . + CDS 36172 - 37596 1771 ## EF3011 hypothetical protein + Prom 37709 - 37768 3.7 35 16 Op 1 . + CDS 37816 - 38820 671 ## EF3012 hypothetical protein + Term 38831 - 38864 4.0 + Prom 38829 - 38888 3.7 36 16 Op 2 . + CDS 38912 - 40360 1049 ## EF3013 hypothetical protein + Term 40366 - 40398 2.0 - Term 40300 - 40343 6.7 37 17 Tu 1 . - CDS 40366 - 42918 2464 ## COG0474 Cation transport ATPase - Prom 42976 - 43035 2.9 - Term 43016 - 43065 13.0 38 18 Tu 1 . - CDS 43068 - 44330 1412 ## COG3633 Na+/serine symporter - Prom 44363 - 44422 8.9 - Term 44389 - 44436 11.3 39 19 Tu 1 . - CDS 44459 - 44842 349 ## COG1226 Kef-type K+ transport systems, predicted NAD-binding component - Prom 44892 - 44951 7.2 40 20 Op 1 . - CDS 44959 - 45918 874 ## COG1715 Restriction endonuclease 41 20 Op 2 . - CDS 45942 - 46682 741 ## COG0101 Pseudouridylate synthase - Prom 46709 - 46768 3.5 - Term 46750 - 46787 7.3 42 21 Tu 1 . - CDS 46794 - 48575 1941 ## EF3018 hypothetical protein - Prom 48643 - 48702 5.9 - Term 48593 - 48635 7.0 43 22 Op 1 . - CDS 48727 - 49653 770 ## EF3019 hypothetical protein 44 22 Op 2 . - CDS 49656 - 50120 440 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - Prom 50178 - 50237 6.8 - Term 50205 - 50238 2.2 45 23 Tu 1 . - CDS 50260 - 50769 678 ## EF3021 hypothetical protein - Prom 50897 - 50956 5.7 + Prom 50903 - 50962 5.5 46 24 Tu 1 . + CDS 51116 - 52504 1685 ## COG1301 Na+/H+-dicarboxylate symporters + Term 52506 - 52562 16.3 - Term 52497 - 52547 8.5 47 25 Tu 1 . - CDS 52575 - 52979 315 ## EF3023 polysaccharide lyase family protein 8 Predicted protein(s) >gi|307679325|gb|GL456402.1| GENE 1 1 - 85 80 28 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNSYEKFHLKEVINASGKMTILGVSKVS >gi|307679325|gb|GL456402.1| GENE 2 97 - 948 1038 283 aa, chain - ## HITS:1 COG:STM3769 KEGG:ns NR:ns ## COG: STM3769 COG3716 # Protein_GI_number: 16767053 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Salmonella typhimurium LT2 # 9 283 13 286 286 321 62.0 1e-87 MEQMTQANEQQLEQKKITKKELSKAFWIYQLGCELSNSYERLQSLVFCASMIPAIKKLYA DDEEQQREALKRHLNFFNTEGTVGASIQGIAIAMEEEKSNGAAISDTAITSIKTGLMGPL AGIGDSIIWAALMPLIISIFIPMAKGGNVIGSIGPLVLYTAITLYISWTLVNKSYTLGRN SILSLLKDGKIKQVIYSANVLGMMMMGALSASYVKIASPMTFKVTGGATIVLQDILDQIM KGLLPLAAVMAIYFFMVKKGPRYGIIIGTIVLVSLVTSFFGLL >gi|307679325|gb|GL456402.1| GENE 3 948 - 1697 1034 249 aa, chain - ## HITS:1 COG:STM3770 KEGG:ns NR:ns ## COG: STM3770 COG3715 # Protein_GI_number: 16767054 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Salmonella typhimurium LT2 # 1 249 1 249 249 291 63.0 1e-78 MGVLGVSIIMGLYYWFARLRFGYTFSGMLSQPLGAALVAGLATGKLSEAMVVGAGIQLVY LGVTSTPGGNVPSDPALASAIAIPIALGVGMNAEAAVALAVPFGVLGVFMDQLRRTINAT WVHMADKYAEELNYGGIYRAAFVYPALAGFLIRFPLVFAANFFGQSVVNKVLEVIPAWLM HGFEVMGGILPALGFALTIMVIGKKNLIPYFLIGFVAVVYFGAEVMAVAILGICIAFLVR NKALSEEAA >gi|307679325|gb|GL456402.1| GENE 4 1721 - 2215 691 164 aa, chain - ## HITS:1 COG:STM3771 KEGG:ns NR:ns ## COG: STM3771 COG3444 # Protein_GI_number: 16767055 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Salmonella typhimurium LT2 # 1 161 1 161 161 167 50.0 1e-41 MSKIVLTRVDSRLIHGQVVTKWLQQSGANEILVVSDELEQDEFLQSIYLMAAPPGVSVVI KGIESAKEYWESQEKEEKKVLFLVPDLTTLKAMVDQEIIKEEIQVGGLGGGPNRKNVLKN INLSEEDVAILTELLTKGIHVFFQAIPEENPLPIQKLIEKYQSL >gi|307679325|gb|GL456402.1| GENE 5 2235 - 2636 401 133 aa, chain - ## HITS:1 COG:STM3772 KEGG:ns NR:ns ## COG: STM3772 COG2893 # Protein_GI_number: 16767056 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Salmonella typhimurium LT2 # 6 105 10 107 141 85 48.0 2e-17 MENEPILLLTHNGWGLELVKSVQMIVGEVTNVHEVALQAEDSLGDYLERVTEKIDQLTWH NQLLILTDVKGGTPSNVALRLSKDYDLLIVSGLCTSLLLESVMKQSGPGFRLQDAEMIQQ AAVDSCQILEIPK >gi|307679325|gb|GL456402.1| GENE 6 2708 - 5521 2164 937 aa, chain - ## HITS:1 COG:STM3773_1 KEGG:ns NR:ns ## COG: STM3773_1 COG1221 # Protein_GI_number: 16767057 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Salmonella typhimurium LT2 # 28 462 30 458 460 289 36.0 2e-77 MRIDNIHQALKQFHVQNPSSKETLLPATASQLSQTSGYTRTAVSEELSELVRKDQVVKVK SRPVLFFDKDYLEEQFPFFKSSTCYDSLASLQEDIYQQTEQIHKKKQLLKMNPFANVIGF DGSLADAIKKLKAAILYPPNGLNILLTGESGVGKTLIAEQLHQFYQVKMNQEVPFIYFNC AEYFNNPELLTSHLFGYKKGSFTGAVNDQKGLVELADGGFLFLDEVHRLTSEGQEKLFTV LDKGYFTRMGEAEKQRNVSIKFIFATTEAVNQHFLKTFLRRIPVTLAIPALAERSLKEKI QLILSFFLEESQRIQKNIHIRYEALKQLTFTHFEANVGELKAAIQFMSAQAYLEVFDQLT ETICIEANEGTVKEQPDVESLLAFNEWIPNDGLTIQYNHFYLSSQELLKSESLKNDRFYN FLLKEYADLKKLTLSTEDALAIMQNKVEQLYDMDIFAQEPLALEAIDETLQPKIQEAIVF FEQLIQEKLTEDFQNILIVHLYSAVFYSAQMNETFYSDTKNIYSGKVTQYQAAKTMVDFL QTLFGISFADTEILFFDLFIRKVTAKKRAHSDEENCGVIVVAHGAATASSMVEYTNLLFS TTVMRAVDMPINQSVEETLEKVRTIVKQNQYKKIILMVDIGSLVYFGNAISQTFQMEVLL ISNINLLTLLEVAREVIYESTAFEYLLPVLKEKNHRALICSKGRFNEAKVLIISCLTGMG TAIKIEQLLLKTFPNELLTNVRIITLEKREVEDIDRLHSFVRKEEKIVGIIGTVKTEVPD IPFISLQDLLSKRGIQLVFELLGHHLEEKQNQELLKKVSAKYIQGLSIEAITDLLTVLNP TTISIELAKIYSDICLQTKIKSDEKILLRFIIHCACMLERQLLNPEYDPTAYEVSYRELP EAVSVIKMAFRPLEVSYNLLIPPLEVRYIYELLFEKA >gi|307679325|gb|GL456402.1| GENE 7 5643 - 6170 545 175 aa, chain - ## HITS:1 COG:YPO0455 KEGG:ns NR:ns ## COG: YPO0455 COG0406 # Protein_GI_number: 16120784 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Yersinia pestis # 2 130 4 137 215 96 38.0 2e-20 MLYVVRHGETDYNVARRICGHAEAQLTEKGYQQAELVAEKIAKQGIQIDRLLASPLKRAQ ETARKIAERNQLTIETEPRLIEMNFGIYDGEPIETTAFQENRSEISLPFPEGESVLDVAG RIYPLIEEALASEETYLFVCHNAVMRVIDNYFNGKKIQDFLDFHCENTQLVQYGE >gi|307679325|gb|GL456402.1| GENE 8 6236 - 7684 1691 482 aa, chain - ## HITS:1 COG:L169390 KEGG:ns NR:ns ## COG: L169390 COG0154 # Protein_GI_number: 15672148 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases # Organism: Lactococcus lactis # 1 482 4 499 499 375 43.0 1e-103 MKDGLYWVQQLKEQKVSRIELLKDIEKKVQKLNPKINGFVTFDSQEAEATYQKNKQQDTL FAGLPFPLKMLGQEKAGWSATAGSQLFKNSTATTTSNFVKQAETIGLMPLGQTNAPEFGF KNITDPALYGPARNPWNLEHSPGGSSGGAAAVVASGIVPIAGASDGGGSIRIPASFSGLI GLKPSRGSMPVGPEGWRGWQGASIDFALTISMRDTKALFYGLRGSHSGAPYQAPLAEWQT HPKKQRLKIALCTASPIGSLISPEATQAAKQAADFLAAAGHEIIEIPYPVDGAALIRSYY QMNGAETTAMMNSIQQGLGRPIRKEEIEPFSWTMHQFGQKIPAATYVHSLQLWDQAAVTM EELFQKFDLFLSPTTAFSAPKINEDLQSEHIRQRMEQAAELTEAELAELIYDYFDKSLQL TPYTQLANLTGQPAISLPTHVTATGLPLGIQLLAARGREDLLFQVGEQFEQEGKFKLPES YR >gi|307679325|gb|GL456402.1| GENE 9 7781 - 8446 636 221 aa, chain - ## HITS:1 COG:no KEGG:EF2984 NR:ns ## KEGG: EF2984 # Name: not_defined # Def: transcriptional regulator, putative # Organism: E.faecalis # Pathway: not_defined # 1 221 1 221 221 407 100.0 1e-112 MKIMVITKNILSETAFQNRLQHLDHQVFCTTCLIGEIKESHLFYRKFDAIILSETIPRKE QYLYLKELARVKTPLFLRSEDIPTSEELSISYQYGILNWLRLDATLDTLRENLLLAELNK PIQREDEKLDVEGIKLTAAERALLAVLYSTPKEHLPMERLCKLIYDTEETANNRKKMTKQ LTKLNKKIQVGGFKKQGIQNTRYKGYKLHPQLLPYIGELFT >gi|307679325|gb|GL456402.1| GENE 10 8827 - 10035 1484 402 aa, chain - ## HITS:1 COG:SA0193 KEGG:ns NR:ns ## COG: SA0193 COG0577 # Protein_GI_number: 15925903 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Staphylococcus aureus N315 # 6 402 7 392 392 186 34.0 7e-47 MKRSIIWKTAFRSILKNKRRSLLTMLGIVIGIASVITIVAIGNGFKEDMVDKLSAEKQKE NVKKISFSAYNTSDMFSDQAMFTDNDLGVVRMVPGVEKIDFDQREVDGAQKGTLNFQAGP KNLSVTYELANKTTKELLAGRQLNDGDNAKLDKTVVVDELVAKELYQDPTAAVNRTFPYK EQLFTIVGVTTNTSGAIGPGNDDSLLYFPKKTYEHYFGKLKDTSTLKLTVAPGYQPDQVL KETIKTLSQQGTMKNSGTYQEYNVKDTIKEMGSLLNNLTLFISAIAAISLVIAGVGVMNM MYISVSERIKEIGIRRALGGTASDIKKQFLTEGIALTLIGGITGYLLGMIIAYLASMALP FSVRPDLMTVSLAIGISVFIGVVFSYFPASAASKKDLIDIMK >gi|307679325|gb|GL456402.1| GENE 11 10032 - 10706 352 224 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 221 1 220 245 140 36 2e-32 MIKLAHIHKYYYSEEETLHVLDDINLQVDAGEFLAIMGPSGSGKSTLINLLGFIDKKFEG TYLFEDREIGDFSDKELSRIRNEAVGFVFQNFSLIETLTVEENIELPLLYSGLTPKEAKD RVHEVLTKVGLPDKGKKHPKQLSGGQQQRVAIARAIVNRPSFIIADEPTGALDSKTSEEI LTLFQQLNNEGVTIILVTHDEETIEYCNRLIKVRDGKILEEVLT >gi|307679325|gb|GL456402.1| GENE 12 10699 - 11865 1521 388 aa, chain - ## HITS:1 COG:BS_yknX KEGG:ns NR:ns ## COG: BS_yknX COG0845 # Protein_GI_number: 16078499 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Bacillus subtilis # 11 383 2 376 377 89 27.0 1e-17 MKKSGQKKRNKKVWFGIGAAVVVVGFIGAKTVFSSKEVEPEYTTYTITEMASLKLDGQVS FLDTRDIFFDPSLGKIAEINVENGKEVKKDSPLLTYNNSDIQATETEQANAVNRNNLQVQ QAQENVNLATQKYNEALNKVAAAKQKLNTAKEAEEKETLNAEIQQLNEAVSAANSEVAQA NQALQLANSDAVGAANTLEQTRGKVNTVVTAPIDGQVTVDASAMSSTDKPVIKIATQKKN IQGKVTEYDYDKLQTGEEVTVTTVGSGKSAPGKIVSIAQTPIAKNEGNPVVSYQFTVEGD FPWAEGLSTSIAVPQKQMIIPTAAIQKEGQKEFVYVYKAGKAKKTPIETETNLGRKVVKS GLNWKDQVIANPNKELKDNQDVQVAAND >gi|307679325|gb|GL456402.1| GENE 13 12037 - 12336 409 99 aa, chain - ## HITS:1 COG:lin0618 KEGG:ns NR:ns ## COG: lin0618 COG0607 # Protein_GI_number: 16799693 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Listeria innocua # 1 99 1 99 99 89 41.0 2e-18 MYNTIGMPEFYQEAKRKKLPIIDVREEMEYQLGHVPQAINLPLSTLTENYQQLDKNQPYY LICQMGSRSAQACAFLSQQGYQVTNVLGGTSGWLGQLEQ >gi|307679325|gb|GL456402.1| GENE 14 12329 - 13978 2222 549 aa, chain - ## HITS:1 COG:L194050_1 KEGG:ns NR:ns ## COG: L194050_1 COG0446 # Protein_GI_number: 15672768 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Lactococcus lactis # 2 456 4 456 456 588 67.0 1e-168 MKIVIIGGVAGGMSAATRLRRLMEDAEIVVMEKGPFVSFANCGLPYYVSGEIAEREQLLV QTPEALKARFNLDVRPHHEVVAIDPIEKVITVKHETEILTEHYDKLILSPGAKPFVPPIT GLAEAKNVFSLRNVPDLDQIMTALTPETKRAVVIGAGFIGLEMAENLQKRGLEVTLVEKA PHVLPPLDEEMAAFVKAELSKNNVQVITGQSAVAFEEEGQVIRLEDGQTLASDLTILSVG VQPENTLAVEAGVATGLRGGIVVDEHYQTNQPDIYAVGDAIVVKQQITQEDALISLASPA NRQGRQVADVIAGLERKNQGSIGTAIVRVFDLTAASTGLSERAAKAAGLTTAVVHISGKD HAGYYPGATDLQLKLVFHPTTGEIYGAQGIGAKGVDKRIDILATAIKGQLTIFDLPELEF TYAPPFGSAKDPVNMLGYAAMNLVEGLSENVQWYELSNELANGAVLLDVRNPAERANGQF KNAVSIPLNELRERLEELDKSTEYIVSCHSGLRSYIAERMLKQAGISAKNLDGAFALYRM VKPEELENV >gi|307679325|gb|GL456402.1| GENE 15 13979 - 14293 407 104 aa, chain - ## HITS:1 COG:L193718 KEGG:ns NR:ns ## COG: L193718 COG0607 # Protein_GI_number: 15672767 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Lactococcus lactis # 2 101 1 101 102 93 51.0 7e-20 MLFQLFKKTPSISTKELQSRLSKEITLLDVRTPSEYRAGHIPQAINVPLNKIPAYNKSAN EVYVICQSGMRSKNAAKILARKNYHVINVRGGMSQWSGQIKGGK >gi|307679325|gb|GL456402.1| GENE 16 14462 - 14722 381 86 aa, chain + ## HITS:1 COG:SA0045 KEGG:ns NR:ns ## COG: SA0045 COG1937 # Protein_GI_number: 15925752 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 6 85 5 84 86 67 46.0 5e-12 MTEEKKKVLNRLRRTEGQIRGIQKMIDEEKECIDVITQLSAVRSSIDRVMGMIVAENLKH CFENPEKDPKEQEERLAQAINMIVKK >gi|307679325|gb|GL456402.1| GENE 17 14768 - 16027 1493 419 aa, chain - ## HITS:1 COG:STM0520 KEGG:ns NR:ns ## COG: STM0520 COG0477 # Protein_GI_number: 16763900 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 414 1 408 415 379 49.0 1e-105 MTDKTKSSLAYWKKIVILLCMGWVTIWIYRSALSPVYPQIRASLNGNASDTALGSISSFY FLGYVVMQIPAGFLVDKIGKKRVLIPGFILFALAALLIAQAQTIGTIYLGSLLAGLGCGS FYGSAYSLTSQNIPQAKKSFATAIVNSGSAVGSGLGMILSSYLVAQKGLPWQVMMYISAF MIICMLVAFQVIIRNHKEDMALIQPTVVDEKDNGAVKEKVPFKKLFAPHMLFAYILYFDT CYAYYMIVTWLPNFLSTERGFQGAAIGLSSSLVAFASIPGALFFSRLADKYMHKKVQFIV VLEFLATAMLLLTVQVSNATLLLIALIMYGFLGKLAVEPIIISWLGENAPKIGIGTTLGV FNFFGMMSSVIAPALTGKISDTTGSKVMGFYIAVVILLIGTILFMLVNLKKRRADSSNK >gi|307679325|gb|GL456402.1| GENE 18 16124 - 17332 1302 402 aa, chain - ## HITS:1 COG:BS_yurG KEGG:ns NR:ns ## COG: BS_yurG COG0075 # Protein_GI_number: 16080305 # Func_class: E Amino acid transport and metabolism # Function: Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase # Organism: Bacillus subtilis # 10 402 12 409 416 434 54.0 1e-121 MYQQPNFVRRTIMTPGPVEAHPSVLRQMGQPILGQFDPEFLQIMDEVREMIKVPFATKNQ QAFAIDGTSRSGLEAGLFALIEPGDKVLVPAYGRFAYLLGEICERARAEVIYLEKDWLAP FEQTTVIEAIKEHQPKIVAMVHGETANAQMQPLDQIGAFCRENEIFFVVDMVATYGGVET KVDDWKIDIAVAGTQKCVSVPSGLSLITYNQRVADYLAGRYQKELGLGADARNERFIQSN YLDLSQLEKYWGPERLNHHTEATTMIYGLHEGLRLLLQEGMENVYARHRKNNRILVESLQ KMGLEIFGKLDTKTPTVIPVVIPEGIDGEKVRSLLLDHFKVEIASSFGDLKGKIWRVGNM GYSSREDNVLHFLSAFETVLKHQGYQFEGGSGSTHALAEYLN >gi|307679325|gb|GL456402.1| GENE 19 17504 - 19129 1615 541 aa, chain + ## HITS:1 COG:BS_yunI KEGG:ns NR:ns ## COG: BS_yunI COG2508 # Protein_GI_number: 16080295 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Bacillus subtilis # 1 538 1 526 531 182 24.0 2e-45 MKILAEVLALPRFSDLQLLSSHSNLTQPLESVEITETPDVADFIPKNVMILTTAMIYKDD QEKLKPFIDSLKQAECTALGIKVGRFLDEISPEIVAYASAVDLPLIKIPSTQPLGGLLHE IVGYLRDSKTEQMSVAFDIQKRFSTLLMQDVDATRFIAEFAKILNAPIILLSPWQQVIAH SNYFYGNQKSAEFFIKQLSKDHFQQLAQEKKIFRLQDERQENIQVAGFPIRVNDYFPYYL LVLSPEQIPYPISEFAIDQAILVLTFMLFKNQKIAESFEHLKTDFLDRLLDTHQEALSKH QNWLELWKNYRLINSDYYQLAIVYGVTKPENETHIRYQQAEGQLIFQWLKEQLPEILPDV ALFKLKNQNKSILIFQSKKNDHLMILQNLAERLQQALPITIRFALGNAYENLEDLPNSYI EASSTLEASLHAQKPATVQLFHPKGLAGLFEKIGTEDVEYFCQQQLKELAYPTEPTLQEL RKTLKVFLDFNCEITKTANALYLHRNTIKYRMNQCEKLLGTSIQEPETSLLLRVALELSE K >gi|307679325|gb|GL456402.1| GENE 20 19247 - 20032 911 261 aa, chain - ## HITS:1 COG:STM0526 KEGG:ns NR:ns ## COG: STM0526 COG3257 # Protein_GI_number: 16763906 # Func_class: R General function prediction only # Function: Uncharacterized protein, possibly involved in glyoxylate utilization # Organism: Salmonella typhimurium LT2 # 1 258 1 258 261 295 58.0 5e-80 MGYKNNRVGYQKELLTSRAVIKKDNYAIIPHDGLVQNAVPGFENVDISILGSPKLGATFV DYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSDGQETHELEAGGYAYFTPEMKMYLA NAQEADTEVFLYKKRYQPLVGHQPYKVVGSIHDQQPEEYEGMTDVLLWSLLPKEFDFDMN MHILSFEPGASHAYIETHVQEHGAYLISGQGMYNLDNEWYPVEKGDYIFMSAYVPQAAYA VGREEPLMYVYSKDANREPEL >gi|307679325|gb|GL456402.1| GENE 21 20054 - 21277 1346 407 aa, chain - ## HITS:1 COG:ECs0578 KEGG:ns NR:ns ## COG: ECs0578 COG0624 # Protein_GI_number: 15829832 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Escherichia coli O157:H7 # 7 407 5 410 411 509 59.0 1e-144 MDLEKVLKQRIEELSAIGSDPAGGMTRLLYTDSWLAAQKYVQSQTEAFGLETQFDEVGNL FCRVAGTEFPQETILTGSHIDTVVNGGTLDGQYGVIASMTAVQYLLDKYGKPRRSLEVLS MAEEEGSRFPTVFWGSKNVVGEAKREEVVDISDNEGKKFVDEMHRQGFDFRQEQTRREDI EAFVEIHIEQGNILENEKLQVGVVHSIVGQRRYTVNLKGQANHAGTTPMSYRHDAVYGFA KICAEAIDRANEIGDPLVLTFGKVIPKPNTVNVVPGEVEFTIDCRHTDAAFLRHFTGELE ERMKTIAQELGLTIAIDRWMDEAPVPMNQAIVEVIEQKAKEGKYQYRMMHSGAGHDSQII APHYPTAMIFVPSIGGISHNPAEATAFPDLVEGVKLLADTLYELAYK >gi|307679325|gb|GL456402.1| GENE 22 21459 - 22823 1680 454 aa, chain - ## HITS:1 COG:ybbX KEGG:ns NR:ns ## COG: ybbX COG0044 # Protein_GI_number: 16128496 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Escherichia coli K12 # 1 452 1 448 453 511 54.0 1e-144 MQAELVIKNGLVILETGEVITDVAVQGGKIVAIGQDLSGERVIDATGLVVSPGMVDAHVH ITDPGGGYRDEWEGYVTGTAACAKGGVTTFMEMPLNQIPATVDKTSLEIKYKAGENKLKV DVGSFGGVVPTNLAGGIQELDEGGVSGYKCFLGTCGDRSIEGDFQNVDDYSLYEGMKQVA KTGKVLAIHAENAPITDKLGALAYQNGETTLAAYVATRPVFTEVEAIQKAILFAKETGCR IHICHVACQEGVEEVLKAQAEGVDVTCETCTHYLYFTTDELDAIGPVVKCSPPIRDADQQ AALWNHVQTGGIAFVTSDHSPCTPDLKDTTNAFEAWGGISGVQNNVDVLFDEAVQKRGLS LKQFADMIAANPADRYHLAQKGRISIGKDADFVLIKPNAPYILKAEDLEYRNQISPYIGR EIGAQVIQTILRGETIYAQETGVTEAFNGVFIKN >gi|307679325|gb|GL456402.1| GENE 23 22824 - 24320 1380 498 aa, chain - ## HITS:1 COG:ECs0572 KEGG:ns NR:ns ## COG: ECs0572 COG1953 # Protein_GI_number: 15829826 # Func_class: F Nucleotide transport and metabolism; H Coenzyme transport and metabolism # Function: Cytosine/uracil/thiamine/allantoin permeases # Organism: Escherichia coli O157:H7 # 11 473 3 462 463 445 53.0 1e-124 MEKNVSQVTAQEETALKARGYNEDLLPSSPKQRTMSARNFFTLWMGSIHNIPNYAAVGGF IFLGLSPLQVMLAVVLSSFIVATFMNLNGVAGSKYGIPFAMHLQSTYGSLGAKLPGFLRG CVAAIAWFGLQTFTGSLALLIILGKFWPNFLEIGGSFQFFGLRLPELMAFTLFWLLNVAI GFGGSKILNRFTAILSPLIYVVIIGLTIWAIRAGGGLTPILSYQVSGAIRSVNPLVAYLI IFNSVVAVWSAPGASVADFTKNARSTRAQVVGQTTGLVVGYGIFAFSSVVILLGGSLYFG IQEWNILNIIDRLDNVAVVVLAMSVFLLTTISTNATGNIIPAGYQLAALFPKKMTYKKGV MIASVISFLIMPWKLMENADSIFIFLNAIGAVLGPVAGVMIANYYFVQKQQIDLNALYVD KHKKEEANPFYGLNKPAYVATILALALSLSGQFIPQVKIIADISWFVGFATGFVLYLVLK KWTWDSKKVKETAYQEGK >gi|307679325|gb|GL456402.1| GENE 24 24915 - 25427 623 170 aa, chain - ## HITS:1 COG:BS_paiA KEGG:ns NR:ns ## COG: BS_paiA COG0454 # Protein_GI_number: 16080268 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 3 170 4 171 172 165 51.0 4e-41 MGEIKQLTIEDAPALQEISIETYTDTFGPYNTPENMQAYLVEAYNLEKLQKELANPHSDF YFIFVDNQLAGYMKLNRETAQTEPMGPEKLEVERLYILPAFKGKKLGTQLLELAEEKARE FGKNALWLGVWEHNDAARAFYKTIGYRYYSQHSFFMGDDEQTDFILLKEL >gi|307679325|gb|GL456402.1| GENE 25 25446 - 25898 581 150 aa, chain - ## HITS:1 COG:BH3077 KEGG:ns NR:ns ## COG: BH3077 COG1846 # Protein_GI_number: 15615639 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 150 1 150 150 196 71.0 1e-50 MTDILREIGMIARSLDSISNIEFKELSLTRGQYLYLVRVCENPGIIQEKIAELIKVDRTT AARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVE ISQLADYLVRMRKNVSEDWEFVKKGNTRNY >gi|307679325|gb|GL456402.1| GENE 26 26091 - 26783 534 230 aa, chain + ## HITS:1 COG:no KEGG:EF3003 NR:ns ## KEGG: EF3003 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 230 1 230 230 318 98.0 1e-85 MKKLFCVILVIFLTGCSSQKANEPKKQENSTNHTTSIKSSTNHYSSSTETSSNNKLKETS ESASTTQASAKSKNEVSTNVEEANSLEATPYAVDLSSLNNPLVFNFKGMNVPTSITLENL NSTPTATFRTKLFGAENGQVKEAINKYELSINTIPTKEIRIFSAADNSIRTVKVNTELIL GTNISSNDEQNRSGTLYLFNNKNGSISLITPNYAGNVTDDQKDVMLEVIQ >gi|307679325|gb|GL456402.1| GENE 27 26948 - 28567 1609 539 aa, chain - ## HITS:1 COG:L1004 KEGG:ns NR:ns ## COG: L1004 COG0659 # Protein_GI_number: 15672032 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfate permease and related transporters (MFS superfamily) # Organism: Lactococcus lactis # 81 531 1 452 460 401 49.0 1e-111 MFKKYTQMIRDEFKGYNQKKLKKDFLAGLTVAAVALPLALAFGVSSGATAAAGMITAIIA GIVIGSLSGGFYQISGPTGAMAAILMSIAAVHGMQGILLATFLAGIFLLLAGILRLGSLT SFIPSPVITGFTSGIAIIIALGQLDNFFGVRSEGHNLIEKISSYRSLGFDLSIPTTVMSI LVVLGLVFFPKKWNAMIPASLVMIILATLATVVFQLPVATVGKIPTSIFSDTRLELGSLQ LSAFQDILVPSISIAMLGMIESLLCGASAGRMTGKPLDSNQELVAQGIGNLILPFFGGVP ATAAIARTSVVIKSGAQTRLAGIFHAVFLLLSMLLLSPVMSKIPMPALAGVLVVTAWRMN EWSVIKEFFQKRFHTALCLFFLTMVATVIFDLSLAIVLGVLAGCLFFIAKSAVITINVEE VDWSRMGLVPTDCTENWVVVYLSGPLFFMSSERLKQTLLQLETKSGVVFSMRGVPSIDST ALDILEEFCLAAEGRGQQVQFAALQPEVEKMIRTVQGNQEKEYHFSVAEFLQTVHVAEP >gi|307679325|gb|GL456402.1| GENE 28 28786 - 29853 993 355 aa, chain + ## HITS:1 COG:BMEI0543 KEGG:ns NR:ns ## COG: BMEI0543 COG3049 # Protein_GI_number: 17986826 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Penicillin V acylase and related amidases # Organism: Brucella melitensis # 2 320 37 329 367 127 31.0 4e-29 MCTGIKIISKTNDIFYGRTMDFTFDFFGNEDPIAPKIPTLIAQFPKGTVLNSQLNPWTAK YAFMGLAMSGTDQPANDGKTVSLAITDGINEAGLSGDIQYLMESSTAPAESLAERGLTPH IAEEVLAYILSNFESVDEVKVAFEKIGLLDQKFQLDSLGEVHFTLHWTINDKNNNSIVLQ PTDNGAFVIYDSIGVVTNSPEYNYHLTNARNYIGMRNYAIKEPYTLKSGATLDPIEGGTS YGLLGIPGDFTSPSRFIRALYYSDNLQEFDSSEGIMQLYRAFQTVMIPRGIGHLGQSNSL SDFTHYWSGYDVTNLTMYVQPESTTSFTKYTLDPALTEVTTFAVSNELLLTDLNQ >gi|307679325|gb|GL456402.1| GENE 29 29905 - 30561 579 218 aa, chain - ## HITS:1 COG:no KEGG:EF3006 NR:ns ## KEGG: EF3006 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 218 1 218 218 391 100.0 1e-107 MNLTHQDFNLFNREIFTFKQLKEQQTSAEIDALKQTYKQHWEKWKALNLAIAQGLPAELG ITKPKIESWTNGWNLRSHFWAAYRSEQRQAENACLALLLNKKQFQVYLMFQHYKSEERTG SVVAYNQLLNRLEAWSQTIDCEGYYIWPQEEHELVDHLPLKDYLADEKQRKILEERIGNR SFQIGKLWFATEKLETIEEKSCQALQELAPLYNALSEK >gi|307679325|gb|GL456402.1| GENE 30 30586 - 31779 721 397 aa, chain - ## HITS:1 COG:no KEGG:EF3007 NR:ns ## KEGG: EF3007 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 41 397 1 357 357 616 98.0 1e-175 MWTIIVSGLFLSSIIAGISGAFLIIEGELTTLLWEVLPAQMKWPILYYFVLCVLGALVLS YLKKRFGQVPQTAHEALTELKAKQSVDYSGVFRNLLAALVILIFGAGVGPEAALLGAIIS LSVWQSDKLRYLYFHYDEQEQQTFWTKIQRLLHPKQFVQRYDTRLAPSDKKKLKQVMNGL FIVNGLVVFTFLMKLVGHPSFITKLGTGKIEMASLWLILPALLTAFVIGNAYQWLQAALA KLCQPFEEKQSILVSFGATCIFLFVILMPRLLFSGQSFMHLVPSFGSQQAWYILVIAAIM KLVFLQVCLQTGWIGGDIFPVVFSAILIGFAVAQFFPTIDSLFVVAIFATSLTTQILGTI LVPGIFVGLFFPITLWPIVVLVLFLQWLLKNKIIKSN >gi|307679325|gb|GL456402.1| GENE 31 31996 - 33651 1401 551 aa, chain - ## HITS:1 COG:BS_yunI KEGG:ns NR:ns ## COG: BS_yunI COG2508 # Protein_GI_number: 16080295 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Bacillus subtilis # 2 530 1 507 531 123 23.0 1e-27 MLKVSDLLTLEELPGITLVAGHKNQDQPILKVNILENPDILDWLTAGELLLTTGYIFKDD RKLQKNFLKELAKHHCAALGFKTQRYFEEVPPDLIKLADEMNVPILAIPYNYTFSQIADV LKSRVTLEQFDMNAQETALHNKIYQILETGSSSFHLLQDLAETIQNPVLLLNDHFEGVNF FDLPKNPIRISSILEDRQETSEFQKQLLEQSHPLLRFYQEPIHLQLKLQNQVVPIEIYPI KKKNVILYYLLVWNTLAPLRPVDVAHFKITAHYLLLQLQLEYSRKFEEYQQRNELFFKLI AHEKRDQAVFQQFQQYYRLAIDKPYAILLISLTLNERQRQERMSILGNQLNQVILGDKQK IVCIEIDSSFVLLVEDPPEKEGDYLKMMQRLAKSSINQLMKVQEDVELFLTIGPKIQGLT QIHESYQQAIDVLAFQRQFVAEKPEMRIASYANFHFRQTLQRYFLEEGQATLRKKYLQPL QKSDQQQHTDFVHTLNVYFQSKRNLSQTAKKLFIHRNTLLQRLEKIEQLVLLDFDKEVDL LALEVALFVGT >gi|307679325|gb|GL456402.1| GENE 32 33782 - 34648 517 288 aa, chain + ## HITS:1 COG:no KEGG:EF3009 NR:ns ## KEGG: EF3009 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 288 1 288 288 557 99.0 1e-157 MTKILAYDQTILSKLPHQTLTSLQCFTHAINYGHVDTQEILLTISTHPEHIAPNTIILDE KKLSHFADLPVQIEPLFIRLGRRQLTLADAQIWQPTPLYLTPSKTKIAIFLTYIQQTRFN PWQALFPASSSTFLFDSYSRTQIQKEMVHFQQAWEQKSFKIALDCLTKILGLGIGLTPTG DDFITGLLASFSALQQLPSNFQQLAVLAKERTNAVSYAEIHEAVNERFSQLVQRVFLSIE SGNTNEMAQAVSALEEVGSTSGSDILCGIIFGLKLFCEENNHDNSNSN >gi|307679325|gb|GL456402.1| GENE 33 34626 - 36185 1804 519 aa, chain + ## HITS:1 COG:ECs0369 KEGG:ns NR:ns ## COG: ECs0369 COG0074 # Protein_GI_number: 15829623 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, alpha subunit # Organism: Escherichia coli O157:H7 # 1 515 1 514 515 508 52.0 1e-144 MTIQTVIKENAYFDSVTLMTISTRANELAGVKTAMIGMGTDMNLEVIRNVGLYTPALDHV TTGDLLIVLDLDDQANSEEILQQVDELFTKKKKTASSEVTYKTLDSALHEEPDANLVVIS VNGKFAAREAHKALDQQKHVMLFSDNVTVDEELALKQKAHEKELFVMGPDCGTAIINGVG LCFANEVRSGDIGIVGASGTGSQEVSVQIHKYGYGISQLIGTGGRDLSAEIGGLMMLDGL DALMVDEQTKAILLISKPPAPEVTEKILKKLAVSTKPVVIYFIGSEQTERKIDNVTFATS SLDAVQKVIQFSQTQEAETSLYQNPTGATLTAIQQQQAPSQKFVRGLFCGGTLCDELLYA LTEVSDDVYSNIHKISERQLANPDHSQAHTLIDFGDDRFTEGRPHPMIDPTSRITRILQE AKDPEVAVLALDFELGYGSHENPVGVLAEALKEAKAIAKADGRELAIIGYVLGTEEDPQD IHEQRKILEDLEVLVVDSSHQLCEATKTFVKGANEHEQK >gi|307679325|gb|GL456402.1| GENE 34 36172 - 37596 1771 474 aa, chain + ## HITS:1 COG:no KEGG:EF3011 NR:ns ## KEGG: EF3011 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 474 1 474 474 956 99.0 0 MSRNDLFKQPLDTINVGIDFIHEDMKKQGIPSHQVNWAPPANGDPELLKLLDQLKNPTLY EKIQQANEEAVTRIIQSKPILVGFDKAINVMPDMTETTILHAGPPITYENMCGPMKGAVQ GALVFEGLAKDLADADRVARSGAITFSPCHEHDAVGSMAGVTSPNMYVHIIKNETYGNTA FTNLSEQLAKVLRFGANDQSVVNRLIWMRDVLGPLLHDAMTFCPEGIDLRLMLSQALHMG DECHNRNVAGSTLLVQALTPYMVQTDFSREQLKEVFEFLGSSDYFSGPTWMGAAKCALDA GHNVENSTIVTTMCRNGVEFGIRVSGIGGNHWFKGPAQRVIGPMFAGYTQEDAGLDMGDS AITETYGVGGFAMAAAPAIVPLVGGTVAEALNYSKEMLEITTKENPNVTIPVLDFMGIPS GIDVLKVLETGMLPVINTAIAHKEPGIGMIGAGLTNPPANVFNEALKALVAKIN >gi|307679325|gb|GL456402.1| GENE 35 37816 - 38820 671 334 aa, chain + ## HITS:1 COG:no KEGG:EF3012 NR:ns ## KEGG: EF3012 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 334 60 393 393 601 98.0 1e-170 MNFTEGEFYGGLFTTLFLLIGGLIAWQLYRKNSKWQGFAIAGGSGAWPWVLASQLLSLFL TIYVFDFTRFFTKEVLWLPTFIVVVGTPPALTLVYGPGWKKLGTISLLSALFTFPFANWL NAQLMPLLNVPGTVSNVTTMAFVGWIVSAICHQLPWMVPSVAPIAQKRQKQPKIENTQTF QWSIRRTFADFSEAWFYGNELVGGLVILGVLTDWFVNINHITNGSGLVPDILMGQMIASA VGVFLYRKHFAEEGWYPTFMPLVSIVPGVILMMGGGFWLSLTIAVLAGISAAPVGSYIAK RLPPFVPGAVGFVSGMAVVTILLSAVLHTFDIFV >gi|307679325|gb|GL456402.1| GENE 36 38912 - 40360 1049 482 aa, chain + ## HITS:1 COG:no KEGG:EF3013 NR:ns ## KEGG: EF3013 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 482 1 482 482 825 99.0 0 MYSMLKRVITEKDLLRQIRLLEQLLNVPQLTAKRLATQIQTTERTVFSDLQYIRSQFPAD WSIETDSSGIRLRNQGNAQTNELWSLFLPQSISIQLLKELLFTKELVTTSFLSTSGVSYE TLKRHIKKMNQALRDFHLTIQLTTMTIQLIGAESNIRIFYHRLLVPFTHNNYFFDDYSIH EEHYFQFLKQVYSSELTVETEEIFGACWFFINTIRNKANCRVSQFSFDSKDVLFQLYQPS LAKLYASEGIYLQGEESFFAFFCFLESWNYDNVYGETLASALHTHYSQLRKSLQQFVTNL STEEARPDLIQTNLLDNLLLLFIKYTESPTLSEQFQLEYQELMTEQAAEDLALSKSNQEL LEILSRYTTIEEPTYFLSLASLLEKQAIYSIQAQTMTAYFLFQGEPAWKAFLQQELAAYL GTRVKLQAIEYVELSQLTLNEADIIISNFPLDHLDLPVFYLSLIPTKNELRRLAELTLHS YF >gi|307679325|gb|GL456402.1| GENE 37 40366 - 42918 2464 850 aa, chain - ## HITS:1 COG:YPO0451 KEGG:ns NR:ns ## COG: YPO0451 COG0474 # Protein_GI_number: 16120780 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Yersinia pestis # 3 837 19 901 908 692 43.0 0 MKWYQLSSTKVIEQTKTKQTGLSSEERQQRLQTNGPNKIEEKQQLKTWQKLAKHFTDLLM VVLLAAAILKFATGEVVEGSIIFLVVLVNGFVGYWQERKAEESLDGLKQMMGQETVVLID GQKTTVSSETLVLGDVVTLQAGDVVPADLRLFDVHNLMIEESILTGESEAVEKITGSLNE ELPTGDQKNLAFSGTLVQAGSALGVVVETGDSTEVGKINHALQSVDQKTTPLVRKMHQLN KQIFQGIMVLIVFLIFFTTFRHGMEWSLLFSAMIALIVAMIPEGLPAVLTMILSMGVHEM ARENAIIKGMPSVETLGSMTVICSDKTGTLTKNEMTVMDVVTEEMTIVKEIMANCQELKL QDQQKIADLQGNPTELALLQYVDQDQLSLRPVEKKIPFSSSYKYMATRHPQAEGSIIYVK GAPEVLLQLSMLSDNQKGAWQAQAAQLAQKGQRVLGFAYKTVTSQQELTHETLSGLTFAG LAGIIDPPKESAIQAVKESQEAGISVKMITGDHKDTAQAIGEQVGLKHTKKVLEGLEIDA MSDEELAQHVQKVDVFARTTPEHKLRIVTALQNNGEIVGMTGDGVNDAPALKKADVGIAM GIKGSEVTKQAADMVLADDNFHTIAKAVKEGRRIFDNLKKTITFFLPTSLAQGLIVVWAL LMNHPLPLTPVQILWVNMVTTITLSYALGFEKASADTMKRPPRDVNEGILTKYSIFRIVY VSVLIMVPGYLMALQFEGQALQQTFLLQSIVLAQAAYMINCRKLVDPSLSTGFFQNKVLF ASLGILFLLQALVVYWPVAQQLIGTTSLNGLQLAMIFVHVVSLFFLVEGEKYITKRFMTK ESQKTSECPR >gi|307679325|gb|GL456402.1| GENE 38 43068 - 44330 1412 420 aa, chain - ## HITS:1 COG:VCA0036 KEGG:ns NR:ns ## COG: VCA0036 COG3633 # Protein_GI_number: 15600807 # Func_class: E Amino acid transport and metabolism # Function: Na+/serine symporter # Organism: Vibrio cholerae # 9 397 14 403 405 366 55.0 1e-101 MVKAIRKLSLIQKIMIGIVIGTTLGFLVPEWTFISVLGELFVGALKAIAPILVFVLIIAS LAQQKAGAKTYVGSILVVYLLATFLAAVVAVTASYLFPVKIVLEAAQEAQAAPTQLSDVL SNVLTSVVQNPIQAMIEGNYLSVLFWSSLIGIGLRQSSVATKDVIANLSTGITTVVQMII GIAPIGILGLVFHSVATTGIAGLAKYGQLLLLLIGTMAVVALVVYPAIVFWNIRQNPYPL VFFVLKESAIPAFFTRSSAANIPINMELAKAMDLNEESYAVSIPLGATINMGGAAITITI MTLAAVHTLGMSVPIYLALLLSIIAAVSACGASGIAGGSLLLIPLACSLFGISNDIAMQV VGVGFIVGVVQDSIETALNSSSDLLFTTSVELADRRKNGEIIDVKALIGKSQLVVEQENI >gi|307679325|gb|GL456402.1| GENE 39 44459 - 44842 349 127 aa, chain - ## HITS:1 COG:MA2218 KEGG:ns NR:ns ## COG: MA2218 COG1226 # Protein_GI_number: 20091059 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, predicted NAD-binding component # Organism: Methanosarcina acetivorans str.C2A # 2 118 1 117 136 84 37.0 5e-17 MLSLLISVKKLFSSFLGILKKEDTRALFFLLATTLLSGTIFYSTVEKLSPLDSLYLSFMT LTTIGYGDVHPVTDLGKIFTMVYATVGLGIMAMFISVVAKSYLYSKQSHHHHHHKNKEHS AEKSSEK >gi|307679325|gb|GL456402.1| GENE 40 44959 - 45918 874 319 aa, chain - ## HITS:1 COG:DR0508 KEGG:ns NR:ns ## COG: DR0508 COG1715 # Protein_GI_number: 15805535 # Func_class: V Defense mechanisms # Function: Restriction endonuclease # Organism: Deinococcus radiodurans # 8 316 16 336 336 209 36.0 6e-54 MNKDWRKLKASNEGIPTFESLMPYTLEVLKDGDVLNRKIILKRIIQFIDIPDEIASMMYP NYPQGDGILANRFSFAISDLYKARAVERIKRGMYQITELGLDLLNNYGEKINRKLLEQQP AYQKYMQELVERNNRVGTTTIEASAPIESAKIDIEDMINNQNNQIAIELLNKVRQVEPVF FEKLVIHLLETMGYSGKHGTAVVTSKSNDGGIDGIINQDPLGTSTVYVQAKRYHETNTIG RPAIQGFYGALAAVNADRGVFITTSSFSANAHEFAKNQGIVLIDGIKLTELMLEFGVGVE IAKTYKLFRIDNDYFEDEL >gi|307679325|gb|GL456402.1| GENE 41 45942 - 46682 741 246 aa, chain - ## HITS:1 COG:BH0167 KEGG:ns NR:ns ## COG: BH0167 COG0101 # Protein_GI_number: 15612730 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Bacillus halodurans # 1 238 1 238 263 204 44.0 1e-52 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARG QVANFKTTSSLTTTEMLSFLNRYLPGDIVVKEVTEMPERFHARYNATGKQYSYYVWNSPI PNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIERNG EMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGLFL DEVYYK >gi|307679325|gb|GL456402.1| GENE 42 46794 - 48575 1941 593 aa, chain - ## HITS:1 COG:no KEGG:EF3018 NR:ns ## KEGG: EF3018 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 593 1 593 593 1102 99.0 0 MFFNFIGLTLFFGIGILVANGAKIVANKGKKSKGTILLMAIELLLLGIFLFVTLPSKNLS TVLWINLIGAVIASGVLLSTRLASKVEVPGIQKGRKEVGKNTNKTANKDWSGKILGVAVL AMILLTIVSSITRISSIDEIYQTIPLKTEEKAEVLTSAKETPIAIAPQTAKRKMLQKFSV IPNSNMFTLDGITAQVVNGEYVYVATVEFNGFFKWLKLGEVPGYFIISATDINAQPEFVE KPIVYTPSAYFGKDAARKIYSAYPGYAATGTINLELDDQGNPYYIQTLYKEYGVSGRMHY NEFKTAVLNATTGEVNVYDSQKAPSFVDAPITSSAANSLNEFFGRYSQGWWNQTMFGAKK DVKIPTENGIYASGQITPMMNKEGNQLLYFTDFTSSEKDQDSALGYSLINARTGQVTYYR DTKVGIMDSDGAISIASKIYPEKKWKASMPVLYNIDGVPTWIVSLMDSKGIFKKYVYINA VDNDIVIDADTAQGALDAYRIELVTKGSNNENTDKANLKTMQGKVARVSVVAGEAQTVVS FLLEDEKTIFSVTTNNSPLALFLKEGDQVTFKAVVTENAKAANVEELKIAGLN >gi|307679325|gb|GL456402.1| GENE 43 48727 - 49653 770 308 aa, chain - ## HITS:1 COG:no KEGG:EF3019 NR:ns ## KEGG: EF3019 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 308 1 308 308 587 99.0 1e-166 MDLKKSIRKAKRKQFIVIGAITVVSFAVLFVGFFVGMDKLSTKNYHTLLEVINDQEMIAS PNTQLDSQVIANSSPFGGEVVTNRSKNIDGYTVEWSNLRSRYSFFRNSIDWNEVYPGSYY SSKNFYEYNRQTKQKVASFYNPAITNYYGGIKNELSELDKMENQVAEVAISFDKPYPYEE VRKMLPSNVNLVWLYVYSETVNEAEGPSGTLPYGFQLSMDDHNEIFDPENNKQHFFETLE KSPLFADNQEGQKFIQQNKNKKVEKLPIWGVMLTGQTKNFKALQNEPFVRGASIGVTAPI VPYIQPEK >gi|307679325|gb|GL456402.1| GENE 44 49656 - 50120 440 154 aa, chain - ## HITS:1 COG:L0142 KEGG:ns NR:ns ## COG: L0142 COG1595 # Protein_GI_number: 15674148 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Lactococcus lactis # 17 154 17 156 164 60 31.0 1e-09 MKKEANFDEVLFSLGQEVIQVLIRRGASLEDAQDAVSQTYTTIFSILPEITSENLRPWFF RVTFNYYITMYRKKKRERTFVANSHPVQSIEKMEGQELLLLIDSLKDEEQELVLLKYYYQ LSYAEIALILELSVENVRKKLYRTRQKLKKELEE >gi|307679325|gb|GL456402.1| GENE 45 50260 - 50769 678 169 aa, chain - ## HITS:1 COG:no KEGG:EF3021 NR:ns ## KEGG: EF3021 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 169 1 169 169 293 99.0 2e-78 MKVTQLSSETLDRAHERFEETLAQMTVAEANTMPAPLIKSVTWLMWHTARELDLQISALN HSEPLWLSQHWTEKFALDLPDETEDWHHTPEEAAKVVVAEKQLLSDYLAASVALTKSYLD QIKEEQLSDVIDKNWTPPVTRQVRLVSAIDDAVMHSGQAVYTRRLVIGK >gi|307679325|gb|GL456402.1| GENE 46 51116 - 52504 1685 462 aa, chain + ## HITS:1 COG:BH3820 KEGG:ns NR:ns ## COG: BH3820 COG1301 # Protein_GI_number: 15616382 # Func_class: C Energy production and conversion # Function: Na+/H+-dicarboxylate symporters # Organism: Bacillus halodurans # 11 441 1 399 413 176 32.0 1e-43 MEKKKREVKGISFTKKMVISLVGGLIVGLGFLFLREHLIRSNQGAVWQTINQILFQDISD PEKGQSAIGLFYIIGQLFINGLQLVIVPMVFTSITLAICHITDTQKLGRISYKTIFGFLS MSLIALLTAGIVGYSVYLTGAFNVSLSETLAPVEVSTSGNPLMVIVNAVTKNIGSAFSDN GAILAVVVLAVITGLCINALGDKIRVFKKLIEEVNAMVTLFLTFVITKFAPIAVFMLLVR TFASYGIDYLKPALVYVVTTTATLLAFLMIGYPLFILFATKLNPVPFIKKIMKVVVFGFS TSSSAATLPLNTKTTVEELGVDSDVAAFVLPLGMTINMNGTAIMQVIAAIFVAGVAGYEV TPANIALIAILALMSSIGTPAAPGAGGIILFTILTGLNYNNEIAIATYSLILAINRPIEM LVTSLNVVGDSATAIYVAHSEDLLDEATYLTDVADLQNAEAE >gi|307679325|gb|GL456402.1| GENE 47 52575 - 52979 315 134 aa, chain - ## HITS:1 COG:no KEGG:EF3023 NR:ns ## KEGG: EF3023 # Name: not_defined # Def: polysaccharide lyase family protein 8 # Organism: E.faecalis # Pathway: not_defined # 1 134 1239 1372 1372 238 100.0 7e-62 KHQEKDYTASSWKVYSEALKQAQTVADQTTATQAEVDQAEAKLRSAVKRLTLKNSGENKK EQKNGGNNGHLNTSTGVDQTGTKQVKPSSQGGFRKASQFLPSTGEKKSIALVIIGLLVIA SGCLLVFRKSKSKK Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:22:37 2011 Seq name: gi|307679324|gb|GL456403.1| Enterococcus faecalis TX0411 genomic scaffold Scfld9, whole genome shotgun sequence Length of sequence - 43749 bp Number of predicted genes - 48, with homology - 48 Number of transcription units - 21, operones - 8 average op.length - 4.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 42 - 101 8.0 1 1 Tu 1 . + CDS 302 - 469 377 ## EF2784 hypothetical protein + Term 513 - 552 2.4 - Term 544 - 592 16.5 2 2 Op 1 . - CDS 633 - 2471 1648 ## EF2785 hypothetical protein 3 2 Op 2 . - CDS 2485 - 2835 537 ## COG3189 Uncharacterized conserved protein - Prom 2855 - 2914 1.8 - Term 2910 - 2947 6.4 4 3 Op 1 2/0.000 - CDS 2957 - 3355 576 ## COG0607 Rhodanese-related sulfurtransferase 5 3 Op 2 5/0.000 - CDS 3371 - 4342 1107 ## PROTEIN SUPPORTED gi|116517028|ref|YP_816079.1| glucokinase 6 3 Op 3 3/0.000 - CDS 4343 - 4561 430 ## COG4483 Uncharacterized protein conserved in bacteria 7 3 Op 4 4/0.000 - CDS 4579 - 5289 727 ## COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) 8 3 Op 5 . - CDS 5300 - 5842 579 ## COG0212 5-formyltetrahydrofolate cyclo-ligase - Prom 5862 - 5921 4.0 9 3 Op 6 . - CDS 5930 - 6700 788 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 6727 - 6786 5.7 + Prom 6784 - 6843 8.4 10 4 Tu 1 . + CDS 6866 - 7441 741 ## COG3152 Predicted membrane protein + Term 7455 - 7488 3.1 + Prom 7443 - 7502 8.0 11 5 Op 1 . + CDS 7547 - 9097 509 ## EF2794 hypothetical protein 12 5 Op 2 . + CDS 9118 - 10182 743 ## EF2795 LysM domain-containing protein + Term 10401 - 10450 16.5 13 6 Tu 1 . - CDS 10441 - 11505 548 ## EF2796 hypothetical protein - Prom 11589 - 11648 4.6 - Term 11672 - 11724 4.2 14 7 Tu 1 . - CDS 11761 - 12012 452 ## EF2797 hypothetical protein - Prom 12041 - 12100 6.1 - TRNA 12102 - 12191 62.4 # Ser CGA 0 0 - Term 12227 - 12274 8.3 15 8 Op 1 . - CDS 12287 - 12436 267 ## PROTEIN SUPPORTED gi|29377324|ref|NP_816478.1| ribosomal protein L33 - Prom 12484 - 12543 6.4 16 8 Op 2 . - CDS 12562 - 14697 2431 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 - Prom 14756 - 14815 8.3 - Term 14801 - 14848 15.2 17 9 Tu 1 . - CDS 14862 - 16799 2664 ## COG0441 Threonyl-tRNA synthetase - Prom 16908 - 16967 6.5 18 10 Tu 1 . - CDS 17196 - 17375 291 ## COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog - Prom 17405 - 17464 6.6 - Term 17435 - 17483 7.1 19 11 Tu 1 . - CDS 17541 - 18986 1542 ## COG1376 Uncharacterized protein conserved in bacteria - Prom 19063 - 19122 3.1 20 12 Tu 1 . - CDS 19133 - 19996 721 ## EF2861 aminoglycoside 6-adenylyltransferase - Prom 20171 - 20230 5.6 + Prom 20028 - 20087 9.5 21 13 Tu 1 . + CDS 20118 - 20699 621 ## COG1434 Uncharacterized conserved protein + Term 20727 - 20775 15.6 + Prom 20717 - 20776 6.2 22 14 Tu 1 . + CDS 20882 - 21826 1134 ## EF2863 endo-beta-N-acetylglucosaminidase + Term 21865 - 21910 5.6 - Term 21920 - 21954 4.3 23 15 Tu 1 . - CDS 22106 - 22924 549 ## EF2864 hypothetical protein - Prom 23084 - 23143 7.7 - Term 23090 - 23142 16.5 24 16 Op 1 . - CDS 23171 - 23890 1106 ## COG0217 Uncharacterized conserved protein - Prom 23914 - 23973 3.4 25 16 Op 2 3/0.000 - CDS 23977 - 25155 768 ## COG1323 Predicted nucleotidyltransferase - Prom 25177 - 25236 4.8 - Term 25185 - 25223 -0.7 26 16 Op 3 6/0.000 - CDS 25245 - 25985 804 ## COG0500 SAM-dependent methyltransferases 27 16 Op 4 6/0.000 - CDS 25987 - 26136 144 ## COG0799 Uncharacterized homolog of plant Iojap protein - Prom 26237 - 26296 3.5 28 16 Op 5 9/0.000 - CDS 26372 - 26962 939 ## COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism 29 16 Op 6 7/0.000 - CDS 26940 - 27599 604 ## COG1057 Nicotinic acid mononucleotide adenylyltransferase 30 16 Op 7 2/0.000 - CDS 27617 - 27928 286 ## PROTEIN SUPPORTED gi|15901580|ref|NP_346184.1| hypothetical protein SP_1748 31 16 Op 8 6/0.000 - CDS 27952 - 29061 1368 ## COG1161 Predicted GTPases 32 16 Op 9 . - CDS 29058 - 29585 655 ## COG2179 Predicted hydrolase of the HAD superfamily - Prom 29744 - 29803 10.2 - Term 29750 - 29800 3.1 33 17 Op 1 10/0.000 - CDS 29807 - 30595 1041 ## COG0825 Acetyl-CoA carboxylase alpha subunit 34 17 Op 2 4/0.000 - CDS 30597 - 31463 710 ## COG0777 Acetyl-CoA carboxylase beta subunit 35 17 Op 3 4/0.000 - CDS 31519 - 32889 1578 ## COG0439 Biotin carboxylase 36 17 Op 4 4/0.000 - CDS 32897 - 33322 612 ## COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases 37 17 Op 5 4/0.000 - CDS 33326 - 33814 642 ## COG0511 Biotin carboxyl carrier protein 38 17 Op 6 11/0.000 - CDS 33816 - 35051 1643 ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase 39 17 Op 7 26/0.000 - CDS 35070 - 35807 214 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 40 17 Op 8 3/0.000 - CDS 35811 - 36740 1117 ## COG0331 (acyl-carrier-protein) S-malonyltransferase 41 17 Op 9 . - CDS 36773 - 37729 1084 ## COG2070 Dioxygenases related to 2-nitropropane dioxygenase - Prom 37803 - 37862 1.8 42 18 Op 1 . - CDS 37866 - 38093 524 ## EF2884 acyl carrier protein 43 18 Op 2 4/0.000 - CDS 38146 - 39111 1042 ## COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III 44 18 Op 3 . - CDS 39127 - 39567 552 ## COG1846 Transcriptional regulators - Prom 39609 - 39668 4.5 - Term 39882 - 39933 8.7 45 19 Tu 1 . - CDS 39957 - 40187 317 ## EF2888 hypothetical protein - Prom 40215 - 40274 7.0 46 20 Tu 1 . - CDS 40288 - 41178 1168 ## COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases - Term 41192 - 41247 11.9 47 21 Op 1 25/0.000 - CDS 41251 - 42474 1337 ## COG0438 Glycosyltransferase 48 21 Op 2 . - CDS 42521 - 43525 1090 ## COG0438 Glycosyltransferase - Prom 43560 - 43619 7.0 Predicted protein(s) >gi|307679324|gb|GL456403.1| GENE 1 302 - 469 377 55 aa, chain + ## HITS:1 COG:no KEGG:EF2784 NR:ns ## KEGG: EF2784 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 55 1 55 55 72 100.0 5e-12 MKKFVSGMLVGTAITVAALAGVATTIKKTVIDPIEEKEDMIEENRKKAMRKRIAR >gi|307679324|gb|GL456403.1| GENE 2 633 - 2471 1648 612 aa, chain - ## HITS:1 COG:no KEGG:EF2785 NR:ns ## KEGG: EF2785 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 612 1 612 612 1239 99.0 0 MKIAIVGAGPRGLSAAERVIEWARKTEINVQLTLFDPYGPGGKIWRAEQPNYLLMNTVIS QVTLFTDESFSGEGPIVKGPTLYEWTQTEAAQYIQQQQPYNYLELLKECHRLGPNDHCSR AFYGMYQKWFYTYLATRCNEQTSLTFFKEPVTAVRAGEDNYYVYTQSIEFTADKVILALG HQENELTTVEQELADYAKEHRLFYSSPKNAADALLALANIPAKQPVVLKGLGLAFFDYLS ALTIGRGGVFSRQNGRLRYEPSGREPIIIAGSGRGFPSHPRGNNQKGYGETYQPVFLTET YLAECRKKGQVTGAEFFGYLKKEVEYVYYTCLIEEKYPHLSKEAFQQLFIQTKGAPESLA HFEKQDWFDWQALEHPETKKTTHESFRSFLLEYLKWDIQEAEKGNLSGPLTTALDSLKDL RDQIRFVLDEGLLTNDESQKWLWHWFTPLNTFLSVGPSVERTEELQALVELGLVTILGPE MRVEMKAGQFITYANLFPENRYNSHFLIEARIPKVNNEKSLNPLTRQLLADKLATLHQLA LADGQIVKTGALLIVPATNQVITKDGQVATGLFSCGIPTEGIHWLTAAAARPGVDPWNMR DMDRIAATIFNS >gi|307679324|gb|GL456403.1| GENE 3 2485 - 2835 537 116 aa, chain - ## HITS:1 COG:BMEII0787 KEGG:ns NR:ns ## COG: BMEII0787 COG3189 # Protein_GI_number: 17989132 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Brucella melitensis # 2 116 4 115 116 115 54.0 2e-26 MIQIKRAYEAPTEQDGYRVLVDRVWPRGKSKESEKLDEWLKEVAPSTELRKWFNHEANKY PKFKQKYQEELKHEPTATAFKQLQTIVKNQPVVTLVYGAKDTVHNQAVVLKELLEK >gi|307679324|gb|GL456403.1| GENE 4 2957 - 3355 576 132 aa, chain - ## HITS:1 COG:lin1388 KEGG:ns NR:ns ## COG: lin1388 COG0607 # Protein_GI_number: 16800456 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Listeria innocua # 22 130 18 126 126 117 55.0 5e-27 MSILWVINGILLVIVLAMVFNELYLKIMVKRSAKMLTEEEFKETMRKAQVIDVREKDTFD AGHILGARSMPYSMLKTTIGSLRKDQPVYLYDQKKALSIRAANLLRKNGYTDIYILKGGY DGWTGKVKKRNS >gi|307679324|gb|GL456403.1| GENE 5 3371 - 4342 1107 323 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116517028|ref|YP_816079.1| glucokinase [Streptococcus pneumoniae D39] # 1 318 1 319 319 431 65 1e-120 MDKKIIGIDLGGTTIKFAILTTDGVVQQKWSIETNILEDGKHIVPSIIESIRHRIDLYNM KKEDFVGIGMGTPGSVDIEKGTVVGAYNLNWTTVQPVKEQIESALGIPFALDNDANVAAL GERWKGAGENNPDVIFITLGTGVGGGIVAAGELLHGVAGCAGEVGHVTVDPNGFDCTCGK RGCLETVSSATGVVRVARHLSEEFAGDSELKQAIDDGQDVSSKDVFEFAEKGDHFALMVV DRVCFYLGLATGNLGNTLNPDSVVIGGGVSAAGEFLRSRVEKYFQEFTFPQVRNSTKIKL AELGNEAGVIGAASLALQFSKEK >gi|307679324|gb|GL456403.1| GENE 6 4343 - 4561 430 72 aa, chain - ## HITS:1 COG:SPy1530 KEGG:ns NR:ns ## COG: SPy1530 COG4483 # Protein_GI_number: 15675429 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 62 1 62 67 66 59.0 9e-12 METLYDVQQLFKQFGMYIYVGARIYDIELMMIELKKLYEGQLVDRDTYLQARHILQREHR IEESRGKQKGID >gi|307679324|gb|GL456403.1| GENE 7 4579 - 5289 727 236 aa, chain - ## HITS:1 COG:lin1374_1 KEGG:ns NR:ns ## COG: lin1374_1 COG0705 # Protein_GI_number: 16800442 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein (homolog of Drosophila rhomboid) # Organism: Listeria innocua # 6 183 173 345 345 137 41.0 2e-32 MNYQTEMKLNRLKNQPFITYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNH EYWRFITPMFLHIGFMHIILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFG TPNSVSAGASTALFGLFGAFVILGRHFRDNPAIMYMVQRYSMFIVINLLFNLFSSSVDMM GHVGGLIGGLLVATAFAVPNREEAFNKHERIMATLIFIFLVVICLLLGFKKYGLPV >gi|307679324|gb|GL456403.1| GENE 8 5300 - 5842 579 180 aa, chain - ## HITS:1 COG:lin1373 KEGG:ns NR:ns ## COG: lin1373 COG0212 # Protein_GI_number: 16800441 # Func_class: H Coenzyme transport and metabolism # Function: 5-formyltetrahydrofolate cyclo-ligase # Organism: Listeria innocua # 25 177 22 176 179 119 43.0 2e-27 MEKNKLRKVGLTALEWLKQHPEIKQHKESSLYEQLFASQQWQQAQTIGMIRSLPLELSTQ PIFERAMQEGKQVAVPRTFKGGKMYFYQVFPETVYDTSAFGVEEPPLTAAEITATAIDLL IVPGIVFNRAGYRIGFGGGFYDRYLEHFSGHSCSLVFSEQLHEQWQPEAFDQPIEQLFIQ >gi|307679324|gb|GL456403.1| GENE 9 5930 - 6700 788 256 aa, chain - ## HITS:1 COG:lin2363 KEGG:ns NR:ns ## COG: lin2363 COG1073 # Protein_GI_number: 16801426 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Listeria innocua # 3 249 2 248 250 169 36.0 6e-42 MKISIRHRYIAKIPALEVTTEEQKNEALPLIVYYHGWQSAKELSLTQARKLAHEGFRVIL PDAMNHGERKTGPISTIPSITFWSSIQYNLIEFPVIIHHFHKLGLIKENWIGVGGVSMGG ITTSALMTQHPEIQAAACLMGTPYPARYIQRVIQRAKEFAIFVPKDLPLLLSWVHQYDLS QTPERLQERPMLFWHGTEDEKIPYEDMADFAQLVSGKTYARNTQFITEIGERHLVKGETM DLVVDFFKEASKTLEK >gi|307679324|gb|GL456403.1| GENE 10 6866 - 7441 741 191 aa, chain + ## HITS:1 COG:L133792 KEGG:ns NR:ns ## COG: L133792 COG3152 # Protein_GI_number: 15673282 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 8 185 3 169 175 62 28.0 5e-10 MVKIEEKGKVTFGQAFKDYFRGYVDFKGRTTRAGYWWMTLVLSILALIFYIAIVGKAVSA ILAAEYFETYDFGNLLPLMLFALVLWLALLLPTWAMCVRRYRDAGMTGWGVLVLYLLSIA CSYTQVFSVMSTLKYDVQTDTVITGGSPVFLFFTLVISLFFFLLTVLPTDKLTTTSQNSV LRFFFRYKEVK >gi|307679324|gb|GL456403.1| GENE 11 7547 - 9097 509 516 aa, chain + ## HITS:1 COG:no KEGG:EF2794 NR:ns ## KEGG: EF2794 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 516 1 516 516 871 99.0 0 MATFKRILNLENYIFTFFILFVFYGAINSPYSLVKILWEKPKHLLVLLPLLIILLLIIYK NKKFLYTKIQALWHLIKTHDRVVIIGSLISLFLLQLLLLTQITVPIGWDVFDNFHSITTE NRDYSKIVLSLNPNNEFFFFMMYYLNKFLRFIDVTGSWSNTWFSWQVVNCLFINSSLFLF YHASKRVFNPLTAFVAYSLFFLSFGLSPWLLTPYTDTAVLLFINLVFFAYSLFEKVSPPF VKYCLLLFIGIGLAWCFLMKPSSIIFFIAFSCIKVLQLLLVNRNKQSIVKLTVVALFLLT GFASAYYSFQFFVEKQTITEIDKEQAKPWTLFVMMGLTGTGGYNDADTQAVNQLPTQEAK KAYTIKMIQDRLKNKGFFGYLRFLAQKNRHNTANGDFDWGWDGGDLIPETPSKNRWQEHL RSLYYPQNQKSNYLRIYMHFFYLLTLLGLLFSIPLKDSKNNYAILKLAFIGAILYLLLFE GGRSRYLIQFMPFWYLLSASGWLGLREIRRYKKIVK >gi|307679324|gb|GL456403.1| GENE 12 9118 - 10182 743 354 aa, chain + ## HITS:1 COG:no KEGG:EF2795 NR:ns ## KEGG: EF2795 # Name: not_defined # Def: LysM domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 354 1 354 354 564 98.0 1e-159 MKKSLLGLIVFLSLLTLTSCRNKVTTKELMANEWAVNSNVDEVVMIVSFSEDTATFKINT DEHTSTAKNELEKAGEELGKQIANKIEYKVKYHLKNNQIRWENEGKEVAYKIKKEKQNLL FTPTKTNNSDNQTKLVLKPYTKKSIDSSTQKDKTEETSSNYQNVSSETNQSTSSSTTKEP LPQVSLADFIGGWGIPQSDNLFFINADGTLTSITQSNVPLQNVSFSVDENGNQTMTFLLN NMPRTVTKNNDGTLTVNGQIYTYLGNITLEQLIERNNQTQQVFEQSEQQPPQNSDSSEQI QNSKSDQPIYDTVRSGEGGRQLAERNGLTLEELLALNPGIETSVFYPGQSLRIK >gi|307679324|gb|GL456403.1| GENE 13 10441 - 11505 548 354 aa, chain - ## HITS:1 COG:no KEGG:EF2796 NR:ns ## KEGG: EF2796 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 354 1 354 354 575 99.0 1e-163 MTFYQLLQLDSFILKQKIHQADTKKQRRYFWRALLIRDILLVSFAILWVSTITFFFGKAV APFSIVLFCLLLSIRFVSYGYREKQALLSLGIVLTILGVSPLISLISVSFLQWGLHFICL LALFFLTGKNPKMGNPGLYTFSYLYLVGTVHYQSFQQLEQTFFVLVFAYLLLAFVYHVKH KKLDQEITFIQMVTENGFFNQRNIWFGYYALGISLLLFIGTHLQIDRFMWATFASSSLFS GYDTFKLSERAKERIIGVVIGSLVSAILLFYIPTNLLGILGGLCLGLCTSYKSKTIFNCV GAIMAASMIFGLETSLYLRILLNMLGLAYGLLYHFVFVKTMSYCNRKEWLKLSE >gi|307679324|gb|GL456403.1| GENE 14 11761 - 12012 452 83 aa, chain - ## HITS:1 COG:no KEGG:EF2797 NR:ns ## KEGG: EF2797 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 19 83 1 65 65 70 96.0 2e-11 MSNYEEKEAQALVKIADVLNKLDASLEELASLDEDTKKHSMKKWIVEKKAIHEIKKIAHE AGKYDKYDEKELEKEMDLLEKFM >gi|307679324|gb|GL456403.1| GENE 15 12287 - 12436 267 49 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29377324|ref|NP_816478.1| ribosomal protein L33 [Enterococcus faecalis V583] # 1 49 1 49 49 107 100 1e-22 MRVNITLECTSCKERNYLTNKNKRNNPDRLEKQKYCPRERKVTLHRETK >gi|307679324|gb|GL456403.1| GENE 16 12562 - 14697 2431 711 aa, chain - ## HITS:1 COG:SP1673 KEGG:ns NR:ns ## COG: SP1673 COG0768 # Protein_GI_number: 15901508 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Streptococcus pneumoniae TIGR4 # 27 709 9 677 680 526 42.0 1e-149 MKKNSFIDKIKKTDAAAKSQRGRKPHIPFRLNLLFFVIFTLFVSLIVRLGYLQIVEGEEF NKKITANSSLQITTPSPRGQIYDSQGKVLVSNKANLAITYTRGKNIEGKDILPIANKVNE LINVPVDPNLTDRDKKDYWLANPENLKAAQGRLTDQDKEDEKGNKITDEGTLYAKAVEKV TPEEIAFDDRTLQAVTIFKRMNAASQMNTVFIKNEGVTEGEIATIGEHTAEISGVSTGTD WTRDYSQSGALRSLLGTVSTEKQGLPAEEVDEYLKKGYARNDRVGTSYLEKQYEDVLQGK KAKSEVVLDNNGKIVSQTPISKGEKGSNLKLTIDSNFQNKVDEILQRNYSQIVKTIGPYS ENAYVVAMNPQTGAILAMSGFHHDLATGEVTPNPLAPILNSEVPGSVVKAGTLTAGYETG VIKGNDVLTDEAILLAGSNPKASWWNASGGTTMQLTAEQALEYSSNAYMMKLVFKMMGVN YYPNMIFPYEVGDDTVFKELRKAFAEYGMGTKTGIDIPGETTGIQNKDFKDSSSAPQGGN LLDLSFGQYDTYSALQLAQYVSTVANNGIRVQPHVVEGIYGNDENGALGKILKEIEPKVL NKVNISEDQIGILQQGFYNVVNGTSQFTMAPGLKSDKFSIAAKTGTAETQATDANGVNHT TVNSNLVAYAPYENPEIAISVVLPHLNDEASKPNQTIAKEVLEAYMEMYKK >gi|307679324|gb|GL456403.1| GENE 17 14862 - 16799 2664 645 aa, chain - ## HITS:1 COG:SPy0517 KEGG:ns NR:ns ## COG: SPy0517 COG0441 # Protein_GI_number: 15674621 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Threonyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 3 645 2 642 647 986 74.0 0 MSIHITFPDGAVKPFDSGITTFDVAKSISNSLAKKALAGKFNGVLIDLDRPIVEDGSLEI VTPDHEDALGILRHSSAHLMANALRRLFPNIKFGVGPAIDSGFYYDTDNGESPVTAEDLP AIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLPEDEIITVYDQGDFVDL CRGVHVPSTGRIQVFKLLSVAGAYWRGNSDNHMMQRIYGTAFFDKKDLKEFIKMREEAKE RDHRKLGKELDLFMVSQEVGSGLPFWLPKGATIRRTIERYIVDKEISLGYQHVYTPIMAD VELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDIHSYRELPIRIAEL GMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTLELMVAVYADFNITDYRF RLSYRDPNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDVQVKTAL GMEETLSTIQLDFLLPERFDLTYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAF PTWLAPIQATIIPVSVEAHSEYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPY QLVVGDKEMEDATVNVRRYGSKETSVEDLSIFIDSMAAEVHNYSR >gi|307679324|gb|GL456403.1| GENE 18 17196 - 17375 291 59 aa, chain - ## HITS:1 COG:L168282 KEGG:ns NR:ns ## COG: L168282 COG1942 # Protein_GI_number: 15672556 # Func_class: R General function prediction only # Function: Uncharacterized protein, 4-oxalocrotonate tautomerase homolog # Organism: Lactococcus lactis # 1 59 1 59 61 65 59.0 3e-11 MPFVHVELIEGRTEEQLTNMVKDITEAVSKNAGAPKENIHVIVNELKKDRYAQGGEWKK >gi|307679324|gb|GL456403.1| GENE 19 17541 - 18986 1542 481 aa, chain - ## HITS:1 COG:CAC0747 KEGG:ns NR:ns ## COG: CAC0747 COG1376 # Protein_GI_number: 15894034 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 6 460 1 465 466 113 24.0 6e-25 MKKEEMQMRNTRRQKSGKNNKKKVIITSLVGLALVAGGSYVYFQSHFLPTTKVNGVSVGW LNVNAAEEKLAQVNQTEEVVVQTGTKEEKIQLPKKYQLDQKFLKDHLHSSKVKLPLNEAF KKELEAKLATLSFPEGKPSKNASIRRGNGTFEIVPEEQGTVVDTQRLNQQIIADVEAGKG NYQYNAKDFYKAPEITKEDQTLKATLTTLNNKLNKTITVDINGEKVAFDKTQIQNVLNDD GTINKEKLTTWVTQLETTYGSANQPVLFTDVHGTTRRFKNNGSYGWSIDGAKTQELLVNA LNSQEQTNAITAPLVGDTKENSKIANNYIEIDLKDQKMYCFIDGKKIVTTDVITGRYNKG TATVPGFHTILYRTTDVNLEGQMLDGSRYSVPVKYWMPLLSQGGVVTQIGIHDSDHKLDK YGDKEAFKTDAGSNGCINTPGTEVSKIFDVSYDGMPVIIYGHIYDDAPGEFDKPVDYGEE V >gi|307679324|gb|GL456403.1| GENE 20 19133 - 19996 721 287 aa, chain - ## HITS:1 COG:no KEGG:EF2861 NR:ns ## KEGG: EF2861 # Name: aadK # Def: aminoglycoside 6-adenylyltransferase # Organism: E.faecalis # Pathway: not_defined # 1 287 1 287 287 574 99.0 1e-162 MRTEEEMFQLIMDVAKQEEHIRAVGMVGSRTNVKAPKDSFQDFDIVYIVEPCAEFFETAT WIAKFGQPLIMQRPKEMTLFPTEPKTRETFLMLFEDGQRIDLTLCPLAEKDNWHEGDSLA IILLDKDENLPPLPVASDKNYTVTVPNQQQFNDCCNEFWWVSTYVVKGLCRNELFYAVTH LYEYCQQELLRLLSWQAAWQEPEPISVGKQFKYLKNYVTPDTMDQLASLLDFSSKEACWN SLIKTQAFFDVIAQDFAKMAQFTYHLQEAKKVTEYTNSLRLKDLQGK >gi|307679324|gb|GL456403.1| GENE 21 20118 - 20699 621 193 aa, chain + ## HITS:1 COG:lin2536 KEGG:ns NR:ns ## COG: lin2536 COG1434 # Protein_GI_number: 16801598 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 11 192 11 188 189 161 45.0 9e-40 MHWLKITSLSIVSFGFCILLILGLLIFTGKNTQPTDKPDAILILGARVLGTSKETALPSR VLQARLDVAIPYIKQHPETPVIVSGGQGADEPATEAAVMKQYLLNKGVPEKQILLENRAT RTKENIVNSQKLLSFKRLVIVTSDFHMYRSQLLAKRAGISNVSGITAASSFPKDIKNFGR ELFSLGYALLFDW >gi|307679324|gb|GL456403.1| GENE 22 20882 - 21826 1134 314 aa, chain + ## HITS:1 COG:no KEGG:EF2863 NR:ns ## KEGG: EF2863 # Name: not_defined # Def: endo-beta-N-acetylglucosaminidase # Organism: E.faecalis # Pathway: not_defined # 1 314 1 314 314 598 100.0 1e-170 MGHQLSTHFFNKKTGIISTFLSLILLVGGLLFALPAFEVQAASTVTPKTVMYVEVNNHDF NNVGKYTLAGTNQPAFDMGIIFAANINYDTVNKKPYLYLNERVQQTLNEAETQIRPVQAR GTKVLLSILGNHEGAGFANFPTYESADAFAAQLEQVVNTYHLDGIDFDDEYAEYGKNGTP QPNNSSFIWLLQALRNRLGNDKLITFYNIGPAAANSSANPQMSSLIDYAWNPYYSTWNPP QIAGMPASRLGASAVEVGVNQNLAAQYAKRTKAEQYGIYLMYNLPGKDSSAYISAATQEL YGRKTNYSPTVPTP >gi|307679324|gb|GL456403.1| GENE 23 22106 - 22924 549 272 aa, chain - ## HITS:1 COG:no KEGG:EF2864 NR:ns ## KEGG: EF2864 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 272 1 272 272 427 95.0 1e-118 MLAFFVGLAVLSLTACREPKEKKVTASTEASSKVEETNEKTSETIDKTNEQASSSVESNE SVKNEEPTADGNNSQLTVADLDTTAINAGDFTTLVGTWKNGKGESLIIHPDGSTNTGGMI TKDSPTDESRPITSLSIRWGPTGAALLLYKIGVENPNGDQSDKTKPRLLITQDSGNYPAE EYYYRSSEEEIQDQNEEAKIIENQEQAEACIRSTLTDAENNDTNLGFLGMNGNDFFFRAQ SKQMVANGGTGTVGFYRVSPQGAVRITDARGN >gi|307679324|gb|GL456403.1| GENE 24 23171 - 23890 1106 239 aa, chain - ## HITS:1 COG:lin0388 KEGG:ns NR:ns ## COG: lin0388 COG0217 # Protein_GI_number: 16799465 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 239 1 239 239 367 79.0 1e-101 MGRKWANIKEKKAAKDANNSRVYAKFGIEIYVAAKSGDPDPHANQKLRFVIERAKTYNVP KHIIDRAIEKAKGSADEQYSELRYEGFGPNGSMVIVDALTNNVNRTAADVRAAFGKNGGN MGVSGAVSYMFDNTGIIGFAGDDADEILEYLMEKDIDVRDVVEEDGQIIVYTEPEDFHHA QEALKEKGIEEFTVTELEMVPQNEVTLEGDDLANFEKMLDVLEDLEDVQKVHHNVDLPE >gi|307679324|gb|GL456403.1| GENE 25 23977 - 25155 768 392 aa, chain - ## HITS:1 COG:BS_ylbM KEGG:ns NR:ns ## COG: BS_ylbM COG1323 # Protein_GI_number: 16078570 # Func_class: R General function prediction only # Function: Predicted nucleotidyltransferase # Organism: Bacillus subtilis # 1 391 1 408 415 309 39.0 8e-84 MKACGIIVEYNPFHNGHRYHAQQARQQSGAEVVIAIMSGNFLQRGEPALLDKWARAEEAL QNGVDLVIELPTAWSVQSADYFAKGGIKLLQALQCESLCFGTDSTSAIDYAAFGQFVQEN QSLIDQTFHTLTDKQLSYPQKMTAVFRQVYPESRFDFSSPNHILGMSYAKENATYPTPMT LYPIARKQAGFHDATISGKVASATAIRQSVFQQEITQVLPTVPSITAQHLQTQAMISWEN YWPFLKYKIVQSSLEELQAIYQMTEGLEYRLKDQIQAAGSFHELMERMKTKRYTWTRLQR LATYILLNMTKEEVETVWQNSYLHVLGFTPKGQAYLKETKAQIQLPVISKVSKENRAMLS LDIRANQLYQMGDSSLKEQNFGRFPLRFSPDT >gi|307679324|gb|GL456403.1| GENE 26 25245 - 25985 804 246 aa, chain - ## HITS:1 COG:L28696 KEGG:ns NR:ns ## COG: L28696 COG0500 # Protein_GI_number: 15672211 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Lactococcus lactis # 3 245 4 244 244 274 56.0 1e-73 MAYETFAFVYDEVMDESLYQKWLDFSNRHLPQGTQQILEMACGTGALAVDFAKSGYDVTA LDLSEEMLMIASERAFEEEVPVQFVQGNMLDLSEVGQYQAITCFSDSLCYMANRQEVQQV FDEVYQALEEEGTFIFDVHSTYKIDSVFPEYSYHYQTEEFAFLWDSYAGEKEHSIEHFLT FFVKEQETDEHFVRYDELHQERTYSLDNYLRMLESAGFMNVKVYADFTDEAPTETSERWF FVCQRD >gi|307679324|gb|GL456403.1| GENE 27 25987 - 26136 144 49 aa, chain - ## HITS:1 COG:lin1521 KEGG:ns NR:ns ## COG: lin1521 COG0799 # Protein_GI_number: 16800589 # Func_class: S Function unknown # Function: Uncharacterized homolog of plant Iojap protein # Organism: Listeria innocua # 1 46 69 114 118 71 67.0 4e-13 MEGKEGGKWILIDLGDVIVHVFQSSERAFYNLEKLWSDAPMVDLSAWVD >gi|307679324|gb|GL456403.1| GENE 28 26372 - 26962 939 196 aa, chain - ## HITS:1 COG:SPy0309 KEGG:ns NR:ns ## COG: SPy0309 COG1713 # Protein_GI_number: 15674476 # Func_class: H Coenzyme transport and metabolism # Function: Predicted HD superfamily hydrolase involved in NAD metabolism # Organism: Streptococcus pyogenes M1 GAS # 6 191 5 190 197 178 48.0 5e-45 MSWITNYDAAQRELLMQKVQMQMSERRFRHVLGVEETAVALAAKYGADEAKASIAALTHD YAKERPNDEFELIIRRDGFDLALLNYGNEIWHGLVGADIVQRELAIDDEEILQAIRVHTT GAAKMSLLDKIIYVADYIEPGRDFPGVKEAREIALVDLDAAVAYETKHTLLHLIEQEHKI YPKTLETYNQWVVNQK >gi|307679324|gb|GL456403.1| GENE 29 26940 - 27599 604 219 aa, chain - ## HITS:1 COG:SP1747 KEGG:ns NR:ns ## COG: SP1747 COG1057 # Protein_GI_number: 15901579 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid mononucleotide adenylyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 17 211 15 209 209 246 62.0 2e-65 MGEKRQARQGADVLLQEEPLRFQTRKQVGLLGGNFNPVHLAHLVMADQVQNQLGLDKVYL MPTYLPPHVDEKKTISSEHRLAMLELAVADNPCLDIEPIELIRKGKSYTYDTMKALKEAN PDTDYYFIIGGDMVEYLPKWHRIDDLLHLVQFVGIRRPNYPTESTYPIIWVDVPQMAISS TLIRQKVKSGCSTRYLLPENVINYIQEKGLYQDELDNKL >gi|307679324|gb|GL456403.1| GENE 30 27617 - 27928 286 103 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15901580|ref|NP_346184.1| hypothetical protein SP_1748 [Streptococcus pneumoniae TIGR4] # 1 103 1 103 103 114 58 8e-25 MKLRGKQKRYLRSQAHHLQPIFQVGKGGLNDAMITQIDEALEKRELIKITLLQNTDEVAE EVAEELTAAIHCDVVQIIGRVLVLFKPSSKEKYQKISAAVKEI >gi|307679324|gb|GL456403.1| GENE 31 27952 - 29061 1368 369 aa, chain - ## HITS:1 COG:SPy0306 KEGG:ns NR:ns ## COG: SPy0306 COG1161 # Protein_GI_number: 15674473 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pyogenes M1 GAS # 3 369 2 372 372 519 66.0 1e-147 MTEAIHCIGCGAIIQTENPHELGYTPKTAFEKGMETGEVYCQRCFRLRHYNDIQDVQLTD DDFLRLLNGLGTEDALIVNVVDIFDFNGSLIPGLHRFIGDNPVLLVGNKVDILPKSLKKP KMVQWMRERAHEAGLRPVDVLLTSGKKPQEMQELLDTIEKYREGRDVYVVGVTNVGKSTL INQIIQQTVGVQDVITTSQFPGTTLDKIEIPLDDGHFLIDTPGIIHRHQMAHYLGKKDLK IIAPQKEIKPKVYQLNAEQTLFLGGLARFDYVQGAKSSFIAYVSNDLNLHRTKTATADAF YEKHVGGLLQPPRADEVAEFPELVRFEFSVKEKTDIVFAGLGWITVTEPGVVAGWAPKGV DVLRRKALI >gi|307679324|gb|GL456403.1| GENE 32 29058 - 29585 655 175 aa, chain - ## HITS:1 COG:SPy0305 KEGG:ns NR:ns ## COG: SPy0305 COG2179 # Protein_GI_number: 15674472 # Func_class: R General function prediction only # Function: Predicted hydrolase of the HAD superfamily # Organism: Streptococcus pyogenes M1 GAS # 5 174 25 194 194 189 52.0 2e-48 MFSKYKPTWMIDAIYKITPAQLKKLGIKAVLTDLDNTLIAWNNPDGTEELKTWLLEMKNA GITVLVVSNNKDSRIKRVVEKFDLDYVARALKPTARGFKLAEKKLGLKPSEMLMVGDQIM TDIRGANAAGIRNVLVQPIVDTDGWNTRINRFFERKIMKYLSKKHPEMTWRGGLE >gi|307679324|gb|GL456403.1| GENE 33 29807 - 30595 1041 262 aa, chain - ## HITS:1 COG:CAC3568 KEGG:ns NR:ns ## COG: CAC3568 COG0825 # Protein_GI_number: 15896802 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase alpha subunit # Organism: Clostridium acetobutylicum # 10 261 13 264 274 325 63.0 5e-89 MEKKTANDVVTLARAQDRLTTLEYIEAIFEDFLEFHGDRYFADDLAVVGGVATLQGKPVT VVGIQKGRNLPENIERNFGSPNPEGYRKALRLMKQAEKFNRPVITFVNTAGAYCGIGAEE RGEGEAIAQNLLEMSDLKVPIISVIIGEGGSGGALALAVADEVWMLEHTIYAVLSPEGFA SILWKDGSRAKEAAELMKITATELKELAIVDKVIPEVMNGQPLEQAKINRMLQKAFISKL TELAKLGTETLLEKRYQRFRKY >gi|307679324|gb|GL456403.1| GENE 34 30597 - 31463 710 288 aa, chain - ## HITS:1 COG:SP0426 KEGG:ns NR:ns ## COG: SP0426 COG0777 # Protein_GI_number: 15900345 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase beta subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 282 1 283 288 406 68.0 1e-113 MALFKKKNYIRINPNRADANDASKKPSVPDNMWAKCPSCKRTLYTKEMGAEKICPHCGYS FRIGAWERLAITVDEKSFHNWDSELVTKDPLNFPGYLEKIEKMQEKTGLDEAVLTGEATI EGQAVAIGIMDANFIMGSMGTIVGEKITRLFERATEKHLPVVIFTASGGARMQEGIFSLM QMAKISAALQRHNKAGLLYLTVLTDPTTGGVTASFAMDGDIILAEPQSLIGFAGRRVIEQ TIRQELPDDFQKAEFLLEHGFVDQIVPRNLLRQRLSDLLRLHSLEGWR >gi|307679324|gb|GL456403.1| GENE 35 31519 - 32889 1578 456 aa, chain - ## HITS:1 COG:SP0425 KEGG:ns NR:ns ## COG: SP0425 COG0439 # Protein_GI_number: 15900344 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxylase # Organism: Streptococcus pneumoniae TIGR4 # 1 451 1 452 455 658 73.0 0 MFSKVLIANRGEIAVRIIRACRELGVQTVAVYSEADQEALHTQLADEAICIGPAKATDSY LNVQAVLSAAIVTNAEAIHPGFGFLSENSQFASMCEECNITFIGPKAETIDAMGNKINAR QLMQKAKVPVIPGSDGVIDSVEEALTIAEEIGYPVMLKAAAGGGGKGIRKVLSKEELPKH FTSAQQEAKAAFGNDDMYLEKIIYPARHIEVQILGDQYGHVIHLGERDCSLQRNNQKVLE ESPSIAISEEKRQMLGETAVRAAQAVHYENAGTIEFLMDPAGDFYFMEMNTRIQVEHPVT EMVTGIDLVKAQLEIASGEPLGYTQEDVTMTGHAIECRINAENPAFNFAPSPGKIQNLLL PSGGMGLRVDSAMYSGYSIPPYYDSMIAKVIVHGENRFDALMKMQRALNEIVTEGIITNA EFQLDLITHDNVLTGDYDTSFLQETFLPNWEPESNH >gi|307679324|gb|GL456403.1| GENE 36 32897 - 33322 612 141 aa, chain - ## HITS:1 COG:CAC3571 KEGG:ns NR:ns ## COG: CAC3571 COG0764 # Protein_GI_number: 15896805 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases # Organism: Clostridium acetobutylicum # 1 140 1 140 141 168 60.0 2e-42 MKLTITEIQEILPHRYPFLLLDSVEEVIPGERVVAKKNVTVNEQVFQGHFPGNPVLPGVL IIESLAQAGAVALLSMPEFKGKTAYFGGLDKAKFRQKVTPGDTLILEVELLKVRASAGMG KGVAKVNGKKVAEAELTFMIG >gi|307679324|gb|GL456403.1| GENE 37 33326 - 33814 642 162 aa, chain - ## HITS:1 COG:SP0423 KEGG:ns NR:ns ## COG: SP0423 COG0511 # Protein_GI_number: 15900342 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxyl carrier protein # Organism: Streptococcus pneumoniae TIGR4 # 1 158 1 160 161 110 45.0 1e-24 MQLEEVKALLTQFDQSTLTEFDLREGSFELYMNKNTVSGRSAVEPVAQPQETPVAASGVS VPVETVSVAEETPTNTPTANEKTEEITSPIVGIVYLQPAPDKENFVKVGDTVKTGDVVCI VEAMKLMNEITATVDGVITEILVNNEDVVEFGQPLFRVAKGE >gi|307679324|gb|GL456403.1| GENE 38 33816 - 35051 1643 411 aa, chain - ## HITS:1 COG:SP0422 KEGG:ns NR:ns ## COG: SP0422 COG0304 # Protein_GI_number: 15900341 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Streptococcus pneumoniae TIGR4 # 1 411 3 410 411 475 58.0 1e-134 MNRVVITGYGVTSPIGNEPETFLESLKTGKNGIGPISKFDVSETGVTLAAEVKDFPMEKY FVKKDGKRMDKFSLFGIYAALEAMAMSGLDTSQLDVDRFGVMVGSGIGGLETIQNQVIRM HDKGPERVAPLFIPMAIGNMVAGNIALRVGAKGICTSTVTACASATHSIGEAFRNIKHGY SDVIIAGGAEAPITEIGISGFASLTALTKATDPEKASIPFDKERSGFVMGEGAGVFILES LDHALERGATILGEVVGYGANCDAYHMTSPTPDGSGAAKAMVLAMEEAGISPEKIGYINA HGTSTQANDSAESKAIELALGDAAKTAYVSSTKSMTGHLLGAAGGIEGIATLNALQHQFI PPTINVENQDEAITVNVVLNESKEHKFDYALSNSLGFGGHNAVICLKRWED >gi|307679324|gb|GL456403.1| GENE 39 35070 - 35807 214 245 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 6 239 4 238 242 87 28 2e-16 MELTGKNVFITGSTRGIGKAVALAFAKEGANIVLNGRSEITPEQRQEIEAFGVKCIGLSG DISDFDAAGEMIQATVDQLGSIDILVNNAGITNDKLLLRMTKEDFNACLDINLVGTFNMT QQAVKRMMKQRSGRIINMASVSGLMGNVGQANYAASKAGVVGFTKSVAREVAPRGITCNA IAPGFIQTEMTDVLSEKVKTQMNAQIPLQTFGQVEDVAATAIFLAKSPYITGQVVNVDGG LVMHG >gi|307679324|gb|GL456403.1| GENE 40 35811 - 36740 1117 309 aa, chain - ## HITS:1 COG:SP0420 KEGG:ns NR:ns ## COG: SP0420 COG0331 # Protein_GI_number: 15900339 # Func_class: I Lipid transport and metabolism # Function: (acyl-carrier-protein) S-malonyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 2 303 3 304 306 345 61.0 5e-95 MKTAILFSGQGAQYQGMGEELYHQEAIVRETFDEASHILGYEMAELCFTENERLNETEYT QPAILTVSVAFYRLLQQKGLTPDVVAGLSLGEYSALVASGALRFSEAVALVQKRGQYMTE AAPQGTGKMVAVMNAEREVIEKACQEASAFGIVAPANYNTPQQIVIGGEVAAVDQAMTLL KEAGVKRMIPLNVSGPFHTALLQPASKKLAQDLAKLNFQTMQIPVISNTTAEIMPQEAIQ ALLEKQVMSAVRFEDSIETMKAMNVGTMIEVGPGKTLTGFVKKIDKTIEMHRVEDVATLT ETLTALTGR >gi|307679324|gb|GL456403.1| GENE 41 36773 - 37729 1084 318 aa, chain - ## HITS:1 COG:SP0419 KEGG:ns NR:ns ## COG: SP0419 COG2070 # Protein_GI_number: 15900338 # Func_class: R General function prediction only # Function: Dioxygenases related to 2-nitropropane dioxygenase # Organism: Streptococcus pneumoniae TIGR4 # 1 317 1 317 324 394 68.0 1e-109 MNQQLCELLGINYPIFQGGMAWVADASLASAVSNAGGLGIIAGGNAPKEVVKKEIKKVKE LTEQPFGVNIMLLSPFADEIVDLVCEEQVPVVTTGAGNPAKYMARFKEHNIKVIPVVPSV ALAKRMEKIGADAVIFEGMEAGGHIGKLTTMSGLPQIVDAVSIPVIAAGGIGDGRGMAAA FMLGAEAVQLGTRFLIAKECNVHPDYKQKVLKARDLDAVITCQHFGHPVRTLKNKLTAQY NQLEKQELQKEVPDLEMFEKIGQGALRKAVVDGDMDYGSVMAGQIAGLIKKEETAQEIID SLMSECKAIVHKMNQRWG >gi|307679324|gb|GL456403.1| GENE 42 37866 - 38093 524 75 aa, chain - ## HITS:1 COG:no KEGG:EF2884 NR:ns ## KEGG: EF2884 # Name: acpP # Def: acyl carrier protein # Organism: E.faecalis # Pathway: not_defined # 1 75 1 75 75 83 100.0 3e-15 MVFEKIQAIIVEELGKDAEEVQLTTNIQEELDADSLDLFQIINEIEDEFDVKIETEDGIQ TVQDLVTYVEKQQAN >gi|307679324|gb|GL456403.1| GENE 43 38146 - 39111 1042 321 aa, chain - ## HITS:1 COG:SP0417 KEGG:ns NR:ns ## COG: SP0417 COG0332 # Protein_GI_number: 15900336 # Func_class: I Lipid transport and metabolism # Function: 3-oxoacyl-[acyl-carrier-protein] synthase III # Organism: Streptococcus pneumoniae TIGR4 # 4 321 3 324 324 367 57.0 1e-101 MKNYARISCTSRYVPENCVTNHQLSEMMDTSDEWIHSRTGISERRIVTQENTSDLCHQVA KQLLEKSGKQASEIDFILVATVTPDFNMPSIACQVQGAIGATEAFAFDISAACSGFVYAL SMAEKLVLSGRYQTGLVIGGETFSKMLDWTDRSTAVLFGDGAAGVLIEAAETPHFLNEKL QADGQRWAALTSGYTINESPFYQGHEQASKTLQMEGRSIFDFAIKDVSQNILSLVTDETV DYLLLHQANVRIIDKIARKTKISREKFLTNMDKYGNTSAASIPILLDEAVENGTLILGSQ QRVVLTGFGGGLTWGSLLLTL >gi|307679324|gb|GL456403.1| GENE 44 39127 - 39567 552 146 aa, chain - ## HITS:1 COG:CAC3579 KEGG:ns NR:ns ## COG: CAC3579 COG1846 # Protein_GI_number: 15896813 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Clostridium acetobutylicum # 1 144 1 144 154 156 59.0 1e-38 MEPNLETVNDYLVSVFNDILTIEESELKKSQFNDLSITEMHTIEAIGMYKKKTSSEVAKE LSITVGTLTVAINNLVKKGYVERLRSEDDRRVVKLGLTKKGKLLFRVHQHFHREMVKNIL KGMEQEEEQALLRALKNLHDFLQEYK >gi|307679324|gb|GL456403.1| GENE 45 39957 - 40187 317 76 aa, chain - ## HITS:1 COG:no KEGG:EF2888 NR:ns ## KEGG: EF2888 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 76 1 76 76 121 100.0 8e-27 MKHSQLVAIIKRLEAMIEAADNEVQVRRFEREGVEKCIVSFDKSTETFELTESDTHQSYQ FDNIDIVAMEIYDLIQ >gi|307679324|gb|GL456403.1| GENE 46 40288 - 41178 1168 296 aa, chain - ## HITS:1 COG:L81616 KEGG:ns NR:ns ## COG: L81616 COG2084 # Protein_GI_number: 15674197 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases # Organism: Lactococcus lactis # 1 292 1 292 293 369 63.0 1e-102 MSKIGFIGTGVMGKSIIRNMMKNNLSVNVYNRTKSKTDDLVAEGAVWYDTPKAIAEASDI IFTMVGFPSDVEGVYFNETGIFQADLTGKIVVDLTTSTPTLAEKIAKKAAEVGAHALDAP VSGGDLGAKNGTLTIMVGGDQESYDTVLPIFKTFGKTFMLHGSAGKGQHTKMANQLMIAG TMTGLTEMLVYANATGLTLEKVLETVGGGSAANWSLSNYGPRILKEDYTPGFFVKHFIKD LKIALDEAKKLDLPLPATQKATELYESLADKGFENDGTQALIKLWWTDGKQPTNKN >gi|307679324|gb|GL456403.1| GENE 47 41251 - 42474 1337 407 aa, chain - ## HITS:1 COG:L190226 KEGG:ns NR:ns ## COG: L190226 COG0438 # Protein_GI_number: 15674120 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Lactococcus lactis # 1 386 1 386 446 433 57.0 1e-121 MKIGFFTDTYFPQVSGVATSIKTLKDELEKHGHEVYIFTTTDPNATDFEEDVIRMPSVPF VSFKDRRVVVRGMWYAYLIAKELELDLIHTHTEFGAGILGKMVGKKMKIPVIHTYHTMYE DYLHYIAKGKVVRPSHVKFFSRVFTNHTTGVVCPSERVIEKLRDYGVTAPMRIIPTGIEI DKFLRPDITEEMIARMRQQLGIEEQQIMLLSLSRISYEKNIQAIIQGLPQIIEKLPQTRL VIVGNGPYLEDLKELAEELEVSEYVQFTGEVPNEEVAIYYKAADYFVSASTSETQGLTYT EAMAAGVQCVAEGNAYLNNLFDHESLGKTFKTDSDFAPTLIDYIQANIKMDQTILDEKLF EISSTNFGNKMIEFYQDTLIYFDQLQMEKENADSIKKIKVKFTSLRK >gi|307679324|gb|GL456403.1| GENE 48 42521 - 43525 1090 334 aa, chain - ## HITS:1 COG:L189090 KEGG:ns NR:ns ## COG: L189090 COG0438 # Protein_GI_number: 15674119 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Lactococcus lactis # 1 333 1 330 332 375 56.0 1e-104 MKILLYFEGEKILAKSGIGRALDHQKRALSEVGIEYTLDADCSDYDILHINTYGINSHRM VRKARKLGKKVIYHAHSTEEDFRNSFIGSNQLAPLVKKYLISLYSKADHLITPTPYSKTL LEGYGIKVPISAISNGIDLSRFYPSEEKEQKFREYFKIDEEKKVIICVGLFFERKGITDF IEVARQLPEYQFIWFGDTPMYSIPKNIRQLVKEDHPENVIFPGYIKGDVIEGAYAAANLF FFPSREETEGIVVLEALASQQQVLVRDIPVYQGWLVANENCYMGHSIEEFKKYIEGLLEG KIPSTREAGYQVAEQRSIKQIGYELKEVYETVLS Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:23:34 2011 Seq name: gi|307679323|gb|GL456404.1| Enterococcus faecalis TX0411 genomic scaffold Scfld10, whole genome shotgun sequence Length of sequence - 7161 bp Number of predicted genes - 13, with homology - 13 Number of transcription units - 4, operones - 2 average op.length - 5.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 39 - 287 306 ## gi|315171666|gb|EFU15683.1| conserved hypothetical protein 2 1 Op 2 . - CDS 284 - 721 488 ## gi|307289822|ref|ZP_07569757.1| conserved domain protein 3 1 Op 3 . - CDS 718 - 1119 338 ## spyM18_1284 hypothetical protein 4 1 Op 4 . - CDS 1103 - 1675 301 ## lin1255 hypothetical protein 5 1 Op 5 2/0.000 - CDS 1688 - 2632 487 ## COG0582 Integrase 6 1 Op 6 . - CDS 2629 - 3321 409 ## COG0286 Type I restriction-modification system methyltransferase subunit 7 1 Op 7 . - CDS 3339 - 3929 263 ## LLKF_1053 phage protein - Prom 4028 - 4087 5.2 8 2 Tu 1 . - CDS 4136 - 4363 239 ## EF1438 hypothetical protein - Prom 4384 - 4443 4.8 9 3 Op 1 . - CDS 4489 - 5013 387 ## EF2127 hypothetical protein 10 3 Op 2 . - CDS 5035 - 5334 378 ## SH1788 hypothetical protein 11 3 Op 3 . - CDS 5334 - 6266 635 ## Selsp_1350 replisome organizer region-containing protein 12 3 Op 4 . - CDS 6285 - 6863 374 ## MPTP_1437 hypothetical protein - Prom 6889 - 6948 1.9 13 4 Tu 1 . - CDS 6962 - 7159 190 ## gi|256961393|ref|ZP_05565564.1| predicted protein Predicted protein(s) >gi|307679323|gb|GL456404.1| GENE 1 39 - 287 306 82 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315171666|gb|EFU15683.1| ## NR: gi|315171666|gb|EFU15683.1| conserved hypothetical protein [Enterococcus faecalis TX1342] # 1 82 1 82 82 138 98.0 1e-31 MSYEITYDENVSNNVQQKNIVVNSRHLYKVYLEKEAYRKNEETGVDYTLDIKCDETGVNV QAVLPHEVLYELNKMIGDSLKF >gi|307679323|gb|GL456404.1| GENE 2 284 - 721 488 145 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|307289822|ref|ZP_07569757.1| ## NR: gi|307289822|ref|ZP_07569757.1| conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX0411] # 1 145 1 145 145 263 100.0 3e-69 MSKKMSTLFHEFIHDNDLNGNDEIIRETNTVVAEDDIEVGTMLDDRVGEKYFYKCMELAE NVIKSFEDEQPELNENQHVVLDWLKESCKLNGLREVIEIMGFLSTTGGKMKYKQVAYAYG DLNDDELAQVLQSFSQWVWEQEEAE >gi|307679323|gb|GL456404.1| GENE 3 718 - 1119 338 133 aa, chain - ## HITS:1 COG:no KEGG:spyM18_1284 NR:ns ## KEGG: spyM18_1284 # Name: not_defined # Def: hypothetical protein # Organism: S.pyogenes_M18 # Pathway: not_defined # 1 133 1 136 137 70 38.0 2e-11 MIPKFRAYSVKENIMYYPDEDKNVEWTIDDDTGFIAPLINLENGMWGMIDKYVLMQSTGL KDKNGVEIFEGDVLYYIPFESHINDSIVVFEKGSFCKKMLRNGKLTSVRFIDSEEYEVIG NVYENPELLEGTE >gi|307679323|gb|GL456404.1| GENE 4 1103 - 1675 301 190 aa, chain - ## HITS:1 COG:no KEGG:lin1255 NR:ns ## KEGG: lin1255 # Name: not_defined # Def: hypothetical protein # Organism: L.innocua # Pathway: not_defined # 4 184 50 225 226 101 35.0 2e-20 MYRKWTEDELVYLEYFVFENDTQLIEASKHLNRSTNAIRKKLCKMRKEDNFRCYMHRLWS EKEDEFLKKHYLSMKNKYIADRLNRTVGAVEFRAKKLGLTKHKKIKELDTEIRRLIDEDY YLSQICTKLNIKMSSLIAHCQREKIPYKKMPRTEYKNYGNHVWNVQDKVRFQEYLSKQEL KASEEDDSKV >gi|307679323|gb|GL456404.1| GENE 5 1688 - 2632 487 314 aa, chain - ## HITS:1 COG:lin2409 KEGG:ns NR:ns ## COG: lin2409 COG0582 # Protein_GI_number: 16801471 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Listeria innocua # 1 314 1 314 314 378 58.0 1e-105 MSKRPRLFAGYFLEWIETYKVGAIRDISVSKYYIAHKHLTEICPDLTIDKLDRKAYQSIL NEYALTHERQTTMDFHHQIGSCVRDMYHEGLIKRDPTYKAIIKGIPPRPKKKKFLQKGEL QKLLRSLELGEGINMDWFILLVAKTGMRFAEAIALTPADFDWTRNTVSINKTLNYKNSTM FFQDTKNKSSVRTISIDWQIVGQFKPLIENLPQDELIFVNRDEKTGKYKRIFNSTYNSHL IRKCKESGITVITMHGLRHTHASILLADGVSTHSIAKRLGHSSVTTTQETYMHIIDELQS KDDEKILGALMQLS >gi|307679323|gb|GL456404.1| GENE 6 2629 - 3321 409 230 aa, chain - ## HITS:1 COG:SPy0676 KEGG:ns NR:ns ## COG: SPy0676 COG0286 # Protein_GI_number: 15674741 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Streptococcus pyogenes M1 GAS # 16 224 2 208 211 236 51.0 2e-62 MRPHKKLFAPLKTMKLTTEKINELLGVDDAYKAPEALMNILLSRDKREIVFNKFLEIEKD LTFDWFHEYFQDEHADRKVKKQDFTPNSIGEVIAKIVGPGSGLTHEVASGTGGMIIQKWR ADRLSIGFFEYKPSMTFYDLEELSDRTIPFLLFNLAIRGMNATVVHGDSLDRKIKQIYFL QNSKDDSLAFSDVNVMPHSDVVTREFQVREWLEEAIDHIESPSVLGGENE >gi|307679323|gb|GL456404.1| GENE 7 3339 - 3929 263 196 aa, chain - ## HITS:1 COG:no KEGG:LLKF_1053 NR:ns ## KEGG: LLKF_1053 # Name: pp124 # Def: phage protein # Organism: L.lactis_KF147 # Pathway: not_defined # 1 194 53 248 257 297 76.0 2e-79 MFNDNKLFKVLDKLPKPDLIIASPPCESWSVASAMKNGNACWKREDVTDNLFAPQILPSP FTIRTTIDYEDTNYVYERQFLKRVNGELTVFNTIKIIKKYQPKYFIIENPASGKIWEYIE DVLNFKLPFKNLTRYNNYDYPLQKPTKFASNIHLGLKNKVIKQEIAWGNFSKSYNERSNI PEKLVDDIFKKVLEKK >gi|307679323|gb|GL456404.1| GENE 8 4136 - 4363 239 75 aa, chain - ## HITS:1 COG:no KEGG:EF1438 NR:ns ## KEGG: EF1438 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 75 1 75 75 137 93.0 1e-31 MKLTSVTFKPSAERFPPIVAIDLDQLTPDEYVTLRNLGYDTQLSKITKRTFEELEGHLGI RGDVAKKNGFYVLIK >gi|307679323|gb|GL456404.1| GENE 9 4489 - 5013 387 174 aa, chain - ## HITS:1 COG:no KEGG:EF2127 NR:ns ## KEGG: EF2127 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 20 85 26 91 110 90 62.0 3e-17 MTKYPTQELKNKRKFHVQFMSTEAMKNIYELGYPFEYFEDSCQFAIETPVGVIDYFGING TWVVRKGQDRGKGIRKLKQYIKNRVGDHVEKVKVVKCSGYLDKDGNITNQIKQAMHFTDD ELANLAAEVAGGKVVNVVIPPEKPKQLLEKVKEESFQEKPKKKTKSNQSWMKKK >gi|307679323|gb|GL456404.1| GENE 10 5035 - 5334 378 99 aa, chain - ## HITS:1 COG:no KEGG:SH1788 NR:ns ## KEGG: SH1788 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 99 4 102 104 101 53.0 9e-21 MNELVKLVEEWAKEKHLDKAEPEKQMLKVIEEVGEVGAALARNNENDLRDGIGDVVVTLI ILAMQNNMDLYECLNQAYSEIKNRQGEMVNGVFVKESDL >gi|307679323|gb|GL456404.1| GENE 11 5334 - 6266 635 310 aa, chain - ## HITS:1 COG:no KEGG:Selsp_1350 NR:ns ## KEGG: Selsp_1350 # Name: not_defined # Def: replisome organizer region-containing protein # Organism: S.sputigena # Pathway: not_defined # 7 145 4 143 381 138 52.0 3e-31 MSDKQKKRYYWLKLKENFFEEDTIEWLEEQPNGKEYCLIYLKLCLKSLKTDGVLVRNVGS MLIPYDAETLARVTNSTVDTVKVAMDLFKKIGLIQLLDTGEIYINQLNELVGSETEAAKQ KRLQRSKVDNVPKLSSECPENVAQSIELEYRDKSIEKDNKEEPKKSPCKYSDEHLRLAQK LQNNLINDFPSEMKRVNIEKWADTFRLIEERDQQTIAAIDYVLDWLPTNSFWFGNIRSAS KLRAQFEKLKFEIKNEKERGQQRTTYQRQNVRTENLPGWAKESNNQQEEKLSPEEQAELD RQIKEFMEGK >gi|307679323|gb|GL456404.1| GENE 12 6285 - 6863 374 192 aa, chain - ## HITS:1 COG:no KEGG:MPTP_1437 NR:ns ## KEGG: MPTP_1437 # Name: not_defined # Def: hypothetical protein # Organism: M.plutonius # Pathway: not_defined # 1 191 37 227 228 266 62.0 4e-70 MYFDYTGPREVEIRFIDPRKFSVAQRRFIFAMLEDIFSFTGQETEVLKEMFYLRFEALQG YEISLRNDSTNTMDDATILANIILNFIFENNIPFKKGYDILPANQEYYFYKCITNRVCCI CGKTGADIDHFDKALGRRKRKSVDHTEYTYAGLCRCHHTEKHNIGITAFKKKYHVKGIKL NQETIKKLHIGV >gi|307679323|gb|GL456404.1| GENE 13 6962 - 7159 190 65 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256961393|ref|ZP_05565564.1| ## NR: gi|256961393|ref|ZP_05565564.1| predicted protein [Enterococcus faecalis Merz96] predicted protein [Enterococcus faecalis Merz96] # 1 65 262 326 326 95 100.0 1e-18 ALKTETINNKTVDTATGEIITEKAPKTSKKQQEKTVTLRLTAEHQKLVALNNFIINNGIQ VEVIE Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:24:19 2011 Seq name: gi|307679322|gb|GL456405.1| Enterococcus faecalis TX0411 genomic scaffold Scfld12, whole genome shotgun sequence Length of sequence - 3104 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - 5S_RRNA 1 - 84 100.0 # AE016830 [D:253255..253370] # 5S ribosomal RNA # Enterococcus faecalis V583 # Bacteria; Firmicutes; Lactobacillales; Enterococcaceae; Enterococcus. - LSU_RRNA 185 - 3093 99.0 # AE016830 [D:250246..253154] # 23S ribosomal RNA # Enterococcus faecalis V583 # Bacteria; Firmicutes; Lactobacillales; Enterococcaceae; Enterococcus. Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:24:28 2011 Seq name: gi|307679321|gb|GL456406.1| Enterococcus faecalis TX0411 genomic scaffold Scfld14, whole genome shotgun sequence Length of sequence - 36093 bp Number of predicted genes - 42, with homology - 42 Number of transcription units - 16, operones - 7 average op.length - 4.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 1471 1643 ## EFA0052 surface exclusion protein Sea1 + Term 1679 - 1717 5.0 + Prom 1604 - 1663 8.0 2 2 Tu 1 . + CDS 1809 - 5726 4495 ## EF_B0011 aggregation substance PrgB + Term 5735 - 5779 8.5 + Prom 5736 - 5795 2.9 3 3 Op 1 . + CDS 5821 - 6141 409 ## EF0486 hypothetical protein 4 3 Op 2 . + CDS 6169 - 7026 952 ## EF_B0012 surface protein PrgC 5 3 Op 3 . + CDS 7077 - 7967 806 ## EF_B0013 hypothetical protein 6 3 Op 4 . + CDS 7987 - 8421 584 ## EF_B0014 hypothetical protein 7 3 Op 5 . + CDS 8468 - 8695 379 ## EF_B0015 hypothetical protein 8 3 Op 6 . + CDS 8708 - 9001 362 ## EF_B0016 hypothetical protein 9 3 Op 7 . + CDS 9016 - 9816 840 ## EF_B0017 hypothetical protein 10 3 Op 8 . + CDS 9818 - 10171 348 ## EF_B0018 hypothetical protein 11 3 Op 9 . + CDS 10125 - 12515 2122 ## COG3451 Type IV secretory pathway, VirB4 components 12 3 Op 10 . + CDS 12527 - 15142 2417 ## COG3942 Surface antigen 13 3 Op 11 . + CDS 15166 - 15792 483 ## EF_B0021 hypothetical protein 14 3 Op 12 . + CDS 15779 - 16024 355 ## EF_B0022 hypothetical protein 15 3 Op 13 . + CDS 16008 - 16616 658 ## EF_B0023 hypothetical protein + Term 16621 - 16661 0.8 + Prom 16688 - 16747 3.3 16 4 Op 1 . + CDS 16775 - 17260 513 ## EF_B0024 hypothetical protein 17 4 Op 2 . + CDS 17260 - 19089 1624 ## COG3505 Type IV secretory pathway, VirD4 components 18 4 Op 3 . + CDS 19140 - 21299 1702 ## EF_B0026 hypothetical protein 19 4 Op 4 . + CDS 21332 - 21604 420 ## EF_B0027 LtrD-related protein, putative + Prom 21744 - 21803 2.9 20 5 Op 1 . + CDS 21850 - 22206 274 ## EF_B0029 hypothetical protein 21 5 Op 2 . + CDS 22207 - 23892 1226 ## COG3843 Type IV secretory pathway, VirD2 components (relaxase) 22 5 Op 3 . + CDS 23925 - 24275 298 ## EF_B0031 hypothetical protein - Term 24743 - 24777 6.2 23 6 Op 1 . - CDS 24792 - 26129 803 ## EF_B0033 hypothetical protein 24 6 Op 2 . - CDS 26135 - 26908 560 ## EF_B0034 hypothetical protein - Prom 26986 - 27045 2.5 25 7 Op 1 . - CDS 27051 - 27599 482 ## EF_B0035 hypothetical protein 26 7 Op 2 . - CDS 27623 - 27796 259 ## EF_B0036 hypothetical protein 27 7 Op 3 . - CDS 27799 - 27984 216 ## EF_B0037 hypothetical protein 28 7 Op 4 . - CDS 27990 - 28439 403 ## EF_B0038 hypothetical protein - Prom 28469 - 28528 2.3 29 8 Tu 1 . - CDS 28571 - 28819 63 ## gi|323481805|gb|ADX81242.1| hypothetical protein EF62_pB0040 - Prom 28941 - 29000 11.1 30 9 Tu 1 . + CDS 28726 - 28926 102 ## EF_B0040 hypothetical protein + Term 28998 - 29052 7.1 31 10 Tu 1 . - CDS 29028 - 29258 338 ## EF_B0041 hypothetical protein - Prom 29286 - 29345 12.3 + Prom 29229 - 29288 8.4 32 11 Op 1 . + CDS 29400 - 29807 356 ## EF_B0042 hypothetical protein 33 11 Op 2 . + CDS 29873 - 30325 637 ## COG0629 Single-stranded DNA-binding protein 34 11 Op 3 . + CDS 30339 - 30491 282 ## gi|307272334|ref|ZP_07553591.1| hypothetical protein HMPREF9514_01095 35 11 Op 4 . + CDS 30503 - 31081 543 ## COG1525 Micrococcal nuclease (thermonuclease) homologs 36 11 Op 5 . + CDS 31172 - 31492 181 ## EF_B0046 hypothetical protein + Term 31539 - 31589 5.2 + Prom 31533 - 31592 8.2 37 12 Tu 1 . + CDS 31715 - 33175 895 ## EF_B0047 hypothetical protein + Term 33271 - 33304 1.1 + Prom 33686 - 33745 7.7 38 13 Tu 1 . + CDS 33766 - 33933 125 ## gi|307269455|ref|ZP_07550796.1| hypothetical protein HMPREF9498_01590 - Term 33894 - 33948 15.2 39 14 Tu 1 . - CDS 33953 - 34291 290 ## gi|323481816|gb|ADX81253.1| conserved hypothetical protein - Prom 34319 - 34378 7.0 + Prom 34386 - 34445 9.4 40 15 Tu 1 . + CDS 34595 - 35254 332 ## gi|307289878|ref|ZP_07569810.1| hypothetical protein HMPREF9509_00194 + Term 35256 - 35305 9.5 + Prom 35258 - 35317 6.6 41 16 Op 1 . + CDS 35360 - 35956 494 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs 42 16 Op 2 . + CDS 35946 - 36093 79 ## EFA0074 hypothetical protein Predicted protein(s) >gi|307679321|gb|GL456406.1| GENE 1 2 - 1471 1643 489 aa, chain + ## HITS:1 COG:no KEGG:EFA0052 NR:ns ## KEGG: EFA0052 # Name: sea1 # Def: surface exclusion protein Sea1 # Organism: E.faecalis # Pathway: not_defined # 1 487 343 828 890 512 85.0 1e-143 ENQADAAKATELIDIKNPTEKQKKQMSDYFVGLLNDVREKLGLQKLKVSSQNIKFAWDNA KYTNPNEIGHDENAINKAAKENGFKEYPGQNFYENLSGGYFQPKDGKISVLDFERAAREA LVDMLFNDGRMGYGHTESLLQADKTNTAIALSEENHGFSSGKIHIIGYNQSRLVDQNTYE EGSVPVFKSKETLQKEVATNQEKLATAQQVESDAQQARSASQQALNTAKTTQATAEKELS VHKATLANLQAVATKSTTNYEEKVRQTATAEKSLQQTKDQLVTINELIQNRAAVLEKAKT NVAEAQAIEQTSAKVLKEKQEAQKAEENTLNSLKEVLDLAKENLNQKQVALKTSTRSLSR LENAQPTYEKALNELNKAEAAVVQAKEAYENSLKSLEELKEQQAVATLAYTQAQEDLSNA KLELQQYQGILRDLEVQQAEQRRQEALQEQVAKEQQRLEREAKQNQTLVASATSADKTPG LQQLSFSTS >gi|307679321|gb|GL456406.1| GENE 2 1809 - 5726 4495 1305 aa, chain + ## HITS:1 COG:no KEGG:EF_B0011 NR:ns ## KEGG: EF_B0011 # Name: prgB # Def: aggregation substance PrgB # Organism: E.faecalis # Pathway: not_defined # 1 1305 1 1305 1305 2283 97.0 0 MNQQTEVKKRFKMYKAKKHWVVAPILFLGVLGVVGLATDNVQAAELDTQPETTMVQPDNP DPQVDSTTPNTAVSEEAPVQKDTTSQPTKVEEVASEKNGAEQSSATPNDTTNVQQPTVGA EKSAQEQPVVSPETTNEPLGQPTEVAPAENEANKSTSIPKEFETPDVDKAVDEAKKDPNI TVVEKPAEDLGNVSSKDLAAKEKEVEQLQKEQAKKIAQQAAELKAKNEKIAKENAEIAAK NKAEKERYEKEVAEYNKHKNENSYVNEAISKNLVFDQSVVTKDTKISSIKGGKFIKATDF NKVNAGDSKDIFTKLRKDMGGKATGNFQNSFVKEANLGSNGGYAVLLEKNKPVTVTYTGL NASYLGRKITKAEFVYELQSSPSQSGTLNAVFSNDPIITAFIGTNRVNGKDVKTRLTIKF FDASGKEVLPDKDSPFAYALSSLNSSLTNKGGHAEFVSDFGANNAFKYINGSYVKKQADG KFYSPEDIDYGTGPSGLKNSDWDAVGHKNAYFGSGVGLANGRISFSFGMTTKGKSNVPVS SAQWFAFSTNLNAKSVTPKRQFNSPKEPEKATIEFNGYKANVVPVLIPNKEVTDGQKNIN DLNVKRGDSLQYIVTGDTTELAKVDPKTVTKQGIRDTFDAEKVTIDLSKVKVYQADASLN EKDLKAVAAAINSGKAKDVTASYDLHLDQNTVTAMMKTNADGSVVLAMGYKYLLVLPFVV KNVEGDFENTAVQLTNDGETVTNTVINHVPVSNPSKDVKADKNGTVGSVSLHDKDIPLQT KIYYEVKSSERPANYGGITEEWGMNDVLDTTHDRFTGKWHAITNYDLKVGDKTLKAGTDI SAYILLENKDNKDLTFTMNQALLAALNEGSNKVGKQAWSVYLEVERIKTGDVENTQTENY NKELVRSNTVVTHTPDDPKPTKAVHNKKGEDINHGKVARGDVLSYEMTWDLKGYDKDFAF DTVDLATGVSFFDDYDETKVSPIKDLLRVKDSKGVDITNQFTISWDDAKGTVTISAKDPQ AFILAYGGQELRVTLPTKVKADVSGDVYNSAEQNTFGQRIKTNTVVNHIPKVNPKKDVVI KVGDKQSQNGATIKLGEKFFYEFTSSDIPAEYAGVVEEWSLSDKLDVKHDKFSGQWSVFA NSNFVLADGTKVNKGDDISKLFTMTFEQGVVKITASQAFLDAMNLKENKHVAHSWKAFIG VERIAAGDVYNTIEESFNNEKIKTNTVVTHTPEKPQTPPEKTVIVPPTPKTPQAPVEPLV VEKASVVPELPQTGEKQNVLLTVAGSLVAMLGLAGLGFKRRKETK >gi|307679321|gb|GL456406.1| GENE 3 5821 - 6141 409 106 aa, chain + ## HITS:1 COG:no KEGG:EF0486 NR:ns ## KEGG: EF0486 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 106 13 118 118 187 99.0 1e-46 MKEIAIQEKDLTLQWRGNTGKLVKVRLKNTRAMEMWYNKQITEENIQEITTLNIIKNGKS LALEVYPEKSIYVKPNLGRINVPVFFIKTPINRGVFEEIFGETLKS >gi|307679321|gb|GL456406.1| GENE 4 6169 - 7026 952 285 aa, chain + ## HITS:1 COG:no KEGG:EF_B0012 NR:ns ## KEGG: EF_B0012 # Name: prgC # Def: surface protein PrgC # Organism: E.faecalis # Pathway: not_defined # 1 274 1 274 285 300 100.0 3e-80 MKKIILSSLFSAVLVFGGGSITAFADDLGPTDPATPPITEPTDSSEPTNPTEPVDPAEPP VIPTDPTEPSKPTEPTTPSEPEKPTEPTTPIDPGTPVEPTEPSEPTEPSQPTEPTTPSEP EKPVTPEQPKEPTQPVIPEKPAEPETPKTPEQPTKPIDVVVTPSGEIDKTNQSAGTQPSI PIETSNLAEVTHVPSETTPITTEAGEEIVAVDKGVPLTKTPEGLKPISSSYKVLPSGNVE VKASDGKMKVLPHTGEKFTLLFSVLGSFFVLISGFFFFKKNKKKA >gi|307679321|gb|GL456406.1| GENE 5 7077 - 7967 806 296 aa, chain + ## HITS:1 COG:no KEGG:EF_B0013 NR:ns ## KEGG: EF_B0013 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 296 4 299 299 480 98.0 1e-134 MFILFTTKQSHVLLNELGFNRKIDLVQGIEQLTKINADLKKSTDRILITYEIYYNVTDEK AFVRETMTLPVVEETVLQNMVQTVETNEEVRQEDLEAFLHLFKRNVSNKSKRIGRSTGSL KKKAEKQQKSTVFTTISRYSYFSVALLIFLAVGVFTGASFGSQSKPTSQNDSKLEERLTH LQEQVHEQPQVDVVARFFLSSLYSGEESDKATQKQVKKYVSEGVLKEIKGSKEQIRTLFL WESKKEGNQWLLTYVVTLKVAKEETEIRQMKVAMEKKNNNYQVTEIPEEKEFTINE >gi|307679321|gb|GL456406.1| GENE 6 7987 - 8421 584 144 aa, chain + ## HITS:1 COG:no KEGG:EF_B0014 NR:ns ## KEGG: EF_B0014 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 144 1 144 144 226 100.0 2e-58 MKYERPLKRESQIKEFELGTHAAVIEKVQKKRSQKGNDMFLLSLLGKSNEKGVYFLTFGN DYTEDNLRYILASIQDNGVEIPDVDFGYNRETFEFLKGKDVYIQVEEQEYKGKVKHAVTN FLTQDEFEESEEMEFSESNTEEDW >gi|307679321|gb|GL456406.1| GENE 7 8468 - 8695 379 75 aa, chain + ## HITS:1 COG:no KEGG:EF_B0015 NR:ns ## KEGG: EF_B0015 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 75 1 75 75 86 100.0 3e-16 MDIVTKIITLIGGIIGLVSAVSIMFGVKEIRSGMSNDDPRTLDKGIEKVVVGGAVILAIG GVVAYVITQVGAIRF >gi|307679321|gb|GL456406.1| GENE 8 8708 - 9001 362 97 aa, chain + ## HITS:1 COG:no KEGG:EF_B0016 NR:ns ## KEGG: EF_B0016 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 97 1 98 98 166 96.0 4e-40 MKLLVEMIVNGQTEWEVVEENAPQAIIQSRGDFSFDENGELIVNDDEISYTGVFEVCETN LLDFTVKEAEIHRFYHKKLEKLGINPLTFENSQEIAN >gi|307679321|gb|GL456406.1| GENE 9 9016 - 9816 840 266 aa, chain + ## HITS:1 COG:no KEGG:EF_B0017 NR:ns ## KEGG: EF_B0017 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 266 1 266 266 384 88.0 1e-105 MNIPKGTTDQLFKSLAEYNPATNEAMSKIAKVLVPLGIAILGILFMIELSNTQKKFQSED GGLTIELLTNIALKYVIAYVCIMGSGYIIDGIVWFTIQAAKWINSIVTATGTSEAIPQVG KVSWWAKPIVGLFEVFAYLALWLSSVITKILIFLRGVQLYMIKALAPLFVAFFVHDELRS IAMGYMKQIMAYALQGALLVLLMGLIPILTANDYLSFASFDGGIWANASAFVLNIMTYCA LILKYVAVIILLVGSQGFAKRLVGAM >gi|307679321|gb|GL456406.1| GENE 10 9818 - 10171 348 117 aa, chain + ## HITS:1 COG:no KEGG:EF_B0018 NR:ns ## KEGG: EF_B0018 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 117 1 117 117 199 99.0 3e-50 MAISSEFYKDLSKVEKKIWGITVREFKAYVCFVFIGIFLLLEVFFLPDLLFMVCALVTSF ALGWYPVLLMMNKWKEVKRAFYLRFYYEERTFQAGKIRRYQKDEFVQKETIKETDVI >gi|307679321|gb|GL456406.1| GENE 11 10125 - 12515 2122 796 aa, chain + ## HITS:1 COG:CAC2047 KEGG:ns NR:ns ## COG: CAC2047 COG3451 # Protein_GI_number: 15895317 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirB4 components # Organism: Clostridium acetobutylicum # 239 751 38 576 617 79 22.0 3e-14 MNLFKKKQSKKQTLSSNVEKVDKKVKKRVQQQANPTVQDSIFYTSQFEEGLMHIVEDEFS KCYKLGEVDYEIAVEEDQLNTVMGYAEGLNTLDKNSRYQLLVVNKREEESLMEDVLLAYQ GDHLDNYRQEINEIITKQYEQDERNFKIEKYAIFTTKSSSMKQANKELEGIMQNFANRFE ANQIKLEVTPMTGLERLSLFSYFLRHGQYFGTSYQDIAVSGLTSKAFIVPSKIKFPNNKA YFRLGENYAAVLTIQQYPKYLEDKLIKELCATGRELAISIHARPYDMMEARKAIQGTKTL NDVAIQKQQKQNFRSGVSEDAISGEAKEIQETTNALMDEIKNNGQKLFNGLFSVFLIAET EKELLEAVESVKNVGATWQVVFDTVDNYKEEALNTILPIGKPYLDVEMSYMRDLTTTNIA TQVPFTNVELQSPTGQFYGRNQLTKNMITIDRKKDLITPSGLIFGTSGSGKGMATKWEIL STRLKFPKDRFLIVDPESEYLPIGKELDAEILDISTGTKNHLNILGMVDKQLLDEEDQEL DLVKEKSNLLSTMFESLLKSYTDVDAGLVDRVTLLTYERFENKETEPTLVDWFRILKEQT DEGAKELANKVETYCVGSQDIFAHQTNIDLTAPFIVFNTKKLDDRLKKFAMKVILDQLWK QVVSGQGKVTSRLYFDELQVNFTTEEEAEWFLNLWARIRKYGAVTTGITQNPTTLLDSKA GQKMIANSEFLILLRQKPIDSQRLVEILSLTPALKKYINDRAPQGTGLISAGGVVVPFEN PIPKETHLFEIMNTDA >gi|307679321|gb|GL456406.1| GENE 12 12527 - 15142 2417 871 aa, chain + ## HITS:1 COG:SA2437_2 KEGG:ns NR:ns ## COG: SA2437_2 COG3942 # Protein_GI_number: 15928230 # Func_class: R General function prediction only # Function: Surface antigen # Organism: Staphylococcus aureus N315 # 761 865 6 109 117 94 46.0 7e-19 MVENKRTWKEKVHVETQVEERLRKNLTLKSREATKLQKKALKTTKKEFKLSKKNYKQSLK KHKLTLKTGKEPLSINHLLDKKKFVEQKKRKKAQKIAYKRTKKVDETRVVNQVKRETKEG LKREATQKVRTTLTQEDTLNEAMTLYEKTQQAKFNMRTALKTGKTVKNLSVKTAKDTYGL GNRLFNFSRGRGFQRTPKDFTLKKQLMKQLRNRAMRFKAAKEAKKAEQGIGLIRSFFNGQ KTLGKVAALILKNPISWVVLLVLFLVFLLSGVASSTQKPAIVQEEEDLTASWTYFTKLDA QHTDDNNQFYSNIDDVLFYMNYRYDDFKLLDMDSTGTKNFETILSDLWTALNGKKPDYQL KTMQSLETDKKSSYFIEEEQAKHYQEIKKELGYQTLDDLLSFPVKTDALIVNKRYGYDKS KEKLTLYQGIDVLIEANQPFHSPMNGQIVSVPDTETLVIEKEKVARLTIRGVNTLRLTKG MDVEEGTFLGNTKNSTVTFQYEKYKKETKDWFFVNPAFYFPRVTYTQTTLLGSADFSPGA SVEKRAQAVYDYLSKKGYTKEGISAILGNFSVESGINPKRAEGDYLNPPVGAHGNSWDEP SWLSMGGPQIYGGRFPNILHRGLGLGQWTDTADGGRRHTLLLDYAKGKNKKWYDLQLQLD FIFDGDAPGSRTAADNVARSKVAATIPELTTYFLTVWEGNPGDKLGERIQAAQNWFTFFS RSGTPIGGSGSEVFAQYKEKMQPLPTDRETKAGQGWPGNAYAPGNCTWYVFNRFAQLGKS IHPTMGNANQWVHNYRQTPGATLESTPKKGDAVIFTNGVAGSSTQYGHVAYVEHVNSDGS FVISEMNVSGEYSMNWRVLKKEAGEYFMRLN >gi|307679321|gb|GL456406.1| GENE 13 15166 - 15792 483 208 aa, chain + ## HITS:1 COG:no KEGG:EF_B0021 NR:ns ## KEGG: EF_B0021 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 208 1 208 208 298 98.0 9e-80 MYNMEKLSRYKKIAFIGGSLLLIVLIFLIGLSVGQRKQVNTNEKQVKVEKKEELTTSTVK KFLIAYYTKKDLGENRNRYEPLVTSAMYNELVNVEKQPVNQAYKGYVVNQVLDTYKIYID TENNEVIVDVTYKNTQRTKRNNDEGALKNQSNQEALKLTFVKQGANFLVDKMAPVTLTNE LQEEPNSYNTHVVTTEESAKESANSGEK >gi|307679321|gb|GL456406.1| GENE 14 15779 - 16024 355 81 aa, chain + ## HITS:1 COG:no KEGG:EF_B0022 NR:ns ## KEGG: EF_B0022 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 81 4 84 84 81 97.0 1e-14 MGKSKVSELEKKKDRVEKELNKANERLDTLKQSIAKKENELKQIEAEIVSALLTENNLSF NELTALLSEKESGGEASVYRE >gi|307679321|gb|GL456406.1| GENE 15 16008 - 16616 658 202 aa, chain + ## HITS:1 COG:no KEGG:EF_B0023 NR:ns ## KEGG: EF_B0023 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 202 1 202 202 294 98.0 2e-78 MFIGNKTTYRYELLHSKNIKGEAIDSTATLVRYVIGVNNDLIKKEEEGWLYVEKIKEGKQ EDQILYGKRIDLPILEDNPYFHDLLDPFDTKKVIPFVELLPSAVENQVKPEEKNKETQDI VELEKNNKTTITTEEKETTELKEQPDEMADKETQKKILEQKIQFKKDELATLTEEIATKQ EEINDLEQKLSTFSKKPEGLYL >gi|307679321|gb|GL456406.1| GENE 16 16775 - 17260 513 161 aa, chain + ## HITS:1 COG:no KEGG:EF_B0024 NR:ns ## KEGG: EF_B0024 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 161 2 162 162 271 98.0 5e-72 MEQREIVHRYYVLGTSTLDKVLKVLLNLSSDGVLALKDKFLPLKGENNLYKLMNREDPLT SAQLHEKVNLNKLKEQLEAQGLPFAFKETKEGTNFYFRVKDTELAKKALERVLTDIKKNP QMILRKPNTMTFDERLAYTAANKKYVGKIDQTKTITKGRKL >gi|307679321|gb|GL456406.1| GENE 17 17260 - 19089 1624 609 aa, chain + ## HITS:1 COG:CAC1969 KEGG:ns NR:ns ## COG: CAC1969 COG3505 # Protein_GI_number: 15895240 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirD4 components # Organism: Clostridium acetobutylicum # 66 509 78 506 591 148 28.0 3e-35 MQTYKKELKPYLYLGVFLFVIGFGIGNFFWLLPGTDYFSKTNYLFTKDILTYIEQTFYRF FITPSLLGFSVGILGFLLGLLMYVRDNDRGIYRHGEEYGSARFATPAEMKKYEDPIPENN IIVSKHVKISLFNKRLPIKLQKNKNIAILGDSGAAKTLAFIKTNLMQRHASFITTDPDGG ILPEIGLLLKKGKYKIKVLDLNTLSNSDTFNVFEYMHSELDVDRVLEAVTEATKEVEKTT GDDFWIKAEGLLVRSLIAYLWFDGRRNDYTPHLGMIADMLRHLKRKDKNVPSPVEEWFEE LNEAIPDNYAYRQWTLFNNLYESETRASVLGIAAARYSVFDHEEVVNMIRTDTMDIDSWN EEKTAVFIAIPETNTSFNFIAALMFATVGEVLRNKSDQVRLGKRVLEEGKELLHVRFLID EFANIGRIPHFEKMLTTFRKREMSFTIVLQSLNQLQTLYRNGWQNILNGCACLLYLGGDE EETTKYLSARAGKQTLSIRKHSMNKGNQGGGSENRDKYGRDLIDRSEVALIGGDECLVFI SKEHVFKDKKFYAFQHDRADELATGPTDDKWYTWRRYMTDEEAILDKISATDIIDHGEIT SELKEETHV >gi|307679321|gb|GL456406.1| GENE 18 19140 - 21299 1702 719 aa, chain + ## HITS:1 COG:no KEGG:EF_B0026 NR:ns ## KEGG: EF_B0026 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 719 1 719 719 1304 98.0 0 MPMTHAQRQKVLEEIERKSIVDVAESLGITLVRQGQSYTWSEHDSFVLTPKKNAFYWNSR QVGGGSIKLVQVIKECTHAEALQYLQTVEAGAVETLKEPTPTNFHYYMKEHTQQNATIDY LLQERKLSRETIDFFFEQNLMAQSTYTDKETGQSEPVIVFKHVGLEEKIKGVALQGIWEN KKLHGERGRLKRVWGNGYYGLTVRVGYPPKIAEATSEKPIKIIVFEAPIDLMSYYELKKE TIGDAVLFCANGLKKGAVSTLIANEIGSYVKEEEKPTVLEQLEKSKLTTEKVQLVLAVDN DEAGKKFIQQFSNSWCPITLDQPKLIEGKSKTDWNDILKQTKNEIKKKEAKLKRQEAKKR SRERNKEMSEKTQMKQKSQPELTLEEIIKKKDYQKLSQHLNDGIKEYLTSDTFKNYLDFA SKFHKYSSKNIRLLLAQNPNIRRVAGYNAWKKLDRQVKKGSKALYVYAPYFKDKVDKNGK KVTDENGEIVKETRYFLTPVFDVEQTTGAELPQLVYNLEENLSDGKTFTRTYNALVEICP VPVTVTSIASGANGYYDPTKKEIVLQQHLGEVMTLKVLLHEMTHAMLHPDSQAIFGDDVY SRQEFEAESVAYIVSRHLGLDTSSYSFGYLSSWTRQGEKLEEFTQSLETITKEARTLIEK ADHALSIEKGIQLPQNKFEERLLNAKKKETEVGKSQANEQKRQQNEPKISAQIANSTRF >gi|307679321|gb|GL456406.1| GENE 19 21332 - 21604 420 90 aa, chain + ## HITS:1 COG:no KEGG:EF_B0027 NR:ns ## KEGG: EF_B0027 # Name: not_defined # Def: LtrD-related protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 90 1 90 90 145 98.0 7e-34 MDQLTDESKFILTQFFLADPLSDQPRVHQKKKEKSKGTVLKELDTLIHDFKEKELEIDLF PYEEAATYLRKLKGNDAYLVFLDELLAPYQ >gi|307679321|gb|GL456406.1| GENE 20 21850 - 22206 274 118 aa, chain + ## HITS:1 COG:no KEGG:EF_B0029 NR:ns ## KEGG: EF_B0029 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 118 1 118 118 168 94.0 7e-41 MENKQKLKRPIQRIVRLSEEENNLIKRKIEESFFPNFQNFALHLLIQGEIRHVDYSELNR LTTEIHKIGININQMARLANQFHEISSEDIKDLTDKVQSLNALVQSELNKLIKRKDQS >gi|307679321|gb|GL456406.1| GENE 21 22207 - 23892 1226 561 aa, chain + ## HITS:1 COG:SP1056_1 KEGG:ns NR:ns ## COG: SP1056_1 COG3843 # Protein_GI_number: 15900926 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirD2 components (relaxase) # Organism: Streptococcus pneumoniae TIGR4 # 1 285 1 251 402 139 34.0 2e-32 MVYTKHFVIHTFDKLNNACSYIENAEKTEVTNDNPSEHLEHLFQYIVNDDKTYMKKLVSG HGIVDPTNPYEEFKLTKLQAAIQRKIGYTFDPKSERLLPPTLTELEKGNAVLAHHLIQSF SPEDDLTPEKIHEIGYNTVMELTGGEYEFVIATHVDKEHLHNHIIFSSTNLKTGKAFRWQ KGTKRVFEQISDKIAAKEGAKIIEKSPKQTHTKYTKWQTESIYKQKIKSRLDFLLEQSSS INDFLEKAEALNLSADFSNKWTTYRLLDEPQIKNTRSRSLSKSDPTRYNYEKIIERLKEN KNVLTVEECVKRYEEKNEQEKNNFDYQFTIEPWQLSHKTERGYYINIDYGYGNSGKLFVG GYKVDPLDNGNYNIYIKRNEYFYFMSDKDATKSKYLTGASLIKQLRLYNGQTPLKREPVM QTIDELVSAINFLAANEIEDTRQLKLLEEKLEVAFLEAEKTLETLDEKMLELHQLSNLLL ENELQGDPELIQKKLKTLLPDATLAEFSYEDVRGEIEAIKTSQSLLENKLERTRNEINQL HEIQAVQKKETANQNNVKPKL >gi|307679321|gb|GL456406.1| GENE 22 23925 - 24275 298 116 aa, chain + ## HITS:1 COG:no KEGG:EF_B0031 NR:ns ## KEGG: EF_B0031 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 8 116 1 109 109 118 77.0 9e-26 MLILKRGLSVVLFLPCFILRILFRYIGLLTILTSGFTTTLILIVARILAFIFLVYPIVIL TTEELRMEWASWIAWLLFGLIVLFFHYLAAWNEDLGSWFLDFSNWLSRVPSKLWAE >gi|307679321|gb|GL456406.1| GENE 23 24792 - 26129 803 445 aa, chain - ## HITS:1 COG:no KEGG:EF_B0033 NR:ns ## KEGG: EF_B0033 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 445 3 447 447 751 88.0 0 MNREIQKPLAPPKAFFDWCTSQIPTYEWKNKKETILASSRKNCPIIKKRLTKASRLSYPT KFYSFGIILISKKRIEIQTYSYWHTIKDGKETLIYEQSNFERFSNDTHLKAHYNYGDWYE GLLSNYGFMSSAYTNTVFYPNNWQEKLTTVSELKYLQLPEIERQELAHIYKYRNEIEFLQ KIGATTLANEIIFDDYRNVFGLYFHKVDMRVITKKWLKANKQKLKTRNPTFHEFMLEKTL KERNAPMINEIEKYVHYSQIKQLPKEVNLTKFQKWFIRKGERFDYYMDYLHMLEELDTPL NDDTVLYPENLQVAHDNAVNTLNLLKSEIEEKEYEERKKQIKVFEAEIDDLLFLTPHSLQ EIVQEGSILHHCVGSQRYLEQHKQGATTIVFIRKKEEPNLPYFTLEYRNQQVTQIQGKRN RQEVPEKIKQAVRQWQENLQHALPS >gi|307679321|gb|GL456406.1| GENE 24 26135 - 26908 560 257 aa, chain - ## HITS:1 COG:no KEGG:EF_B0034 NR:ns ## KEGG: EF_B0034 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 256 1 256 258 359 77.0 5e-98 MDFQNIQTVKELIHALKQYNQNLATTIFDDTQGYISVAFRKESIERNGKTFQFLCFYPNY EVALYPVVTLLSYLEKLPEQATIAIKNPDGNYSSLYLTIDETIDQGNKYKWLVISDKLSY ERFFLTSTLTAQEQALEKMLKELETEHDNTVEYIHNWLCKQNDEFLFQGILKEDRTIKGA VTYCMGKAKEQAENQTSAMVPDEVAFRWIKEYFMLEKLPEMKVIGKVMTTTKKQPAKKEE PKPQRKEVDEQIKLFEL >gi|307679321|gb|GL456406.1| GENE 25 27051 - 27599 482 182 aa, chain - ## HITS:1 COG:no KEGG:EF_B0035 NR:ns ## KEGG: EF_B0035 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 182 1 182 182 362 98.0 5e-99 MGTRTAIFKEQADGTYQGIYCHWDGYIEGVGAVLYEHYQDSEKIQKVINQKKGLSCLGVK ENVLYEYDNVGCRELTCCGWHEFCLYVRPETEMYLAQSLEEIREQQYLTLTDLDRIDGWT ELVEGKVTFTPYRGSDNNGYLYAQRQSGEWLVSTMNCNGDMKDFEPLSKHFHEKKTKKET FC >gi|307679321|gb|GL456406.1| GENE 26 27623 - 27796 259 57 aa, chain - ## HITS:1 COG:no KEGG:EF_B0036 NR:ns ## KEGG: EF_B0036 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 57 1 57 57 74 100.0 1e-12 MAEKKKKYCVTIVETLEVAVSVFAESEEQAHELVSNMYYDQEIILTEDNHEATEFII >gi|307679321|gb|GL456406.1| GENE 27 27799 - 27984 216 61 aa, chain - ## HITS:1 COG:no KEGG:EF_B0037 NR:ns ## KEGG: EF_B0037 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 61 1 61 61 95 100.0 6e-19 MNDPQLKNQLEQARKEYQKLNKAILENDTPTLLLNYGCLKNANNRLNQLAFFLNHIEWKD V >gi|307679321|gb|GL456406.1| GENE 28 27990 - 28439 403 149 aa, chain - ## HITS:1 COG:no KEGG:EF_B0038 NR:ns ## KEGG: EF_B0038 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 149 1 149 149 268 100.0 7e-71 MNKKENFINSLSINRYLNNDLKSLDLEECLDLFNTLRSQCFLIDENNLYFDCIDFETVEY YLQKLFSIESFYDFSKVYIECLLQGENILEKEFTLFHSDEKMTVGQLLQPFVIVGNGMTL GDCLPILTALEAQKTLIEITKNNRIPERK >gi|307679321|gb|GL456406.1| GENE 29 28571 - 28819 63 82 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|323481805|gb|ADX81242.1| ## NR: gi|323481805|gb|ADX81242.1| hypothetical protein EF62_pB0040 [Enterococcus faecalis 62] # 22 82 1 61 61 99 98.0 1e-19 MRLVLLSALKFRLFGSCFYGRVSSQSFYDRSLSYVPVSRCLLQYHSQSKRQGYMNSLRSP LSFLGVYDSFSAQQPTETYWRK >gi|307679321|gb|GL456406.1| GENE 30 28726 - 28926 102 66 aa, chain + ## HITS:1 COG:no KEGG:EF_B0040 NR:ns ## KEGG: EF_B0040 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 66 1 66 66 122 98.0 5e-27 MSGHKTIERTHVRKSMSQRGEILMHLKELDAKRLVLSFVLPCFSKAFLSSGGGGWGEIEI NTKQSN >gi|307679321|gb|GL456406.1| GENE 31 29028 - 29258 338 76 aa, chain - ## HITS:1 COG:no KEGG:EF_B0041 NR:ns ## KEGG: EF_B0041 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 76 1 76 76 135 100.0 4e-31 MKDLSREEVLTYLENNVVDKQGAAKITGQSLNAFTQSVKLNAIKPYFEIKHVNGERPTVR LYHVDDLKEYAKNKRR >gi|307679321|gb|GL456406.1| GENE 32 29400 - 29807 356 135 aa, chain + ## HITS:1 COG:no KEGG:EF_B0042 NR:ns ## KEGG: EF_B0042 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 135 30 164 164 238 99.0 6e-62 MNLEKMKMEARKRMKILGIHEPTIAQFIEEGKISFSGKSYLGANYWINEERKKAIEIIEK ENNILVYYAIEQKYMGDITMLYLFYISPYEEDWEMDYQSIVENYQYTYGLNETDPFLSEF GEIKFKNMFGGLVKQ >gi|307679321|gb|GL456406.1| GENE 33 29873 - 30325 637 150 aa, chain + ## HITS:1 COG:SPy1830 KEGG:ns NR:ns ## COG: SPy1830 COG0629 # Protein_GI_number: 15675657 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Streptococcus pyogenes M1 GAS # 1 150 1 163 163 167 54.0 6e-42 MINNVTLVGRLTKDCDLRYTSSGVAVAAFTLAVNRNFTNQNGEREADYIQCVIWRKPAET LANYTRKGTLVGLVGRLQTRNYENQQGQRIYVTEVVVESFQLLESKEVSQQRGVNASNPT PVGQQASNTQQPFPDLEGSSIEISDHDLPF >gi|307679321|gb|GL456406.1| GENE 34 30339 - 30491 282 50 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307272334|ref|ZP_07553591.1| ## NR: gi|307272334|ref|ZP_07553591.1| hypothetical protein HMPREF9514_01095 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9514_01095 [Enterococcus faecalis TX0855] conserved hypothetical protein [Enterococcus faecalis TX1302] # 1 49 1 49 69 68 95.0 2e-10 MVNGNLQKIYADSTKKRTAQQTKWERAVEGLTFDRLEKKKIEYSLKRKKS >gi|307679321|gb|GL456406.1| GENE 35 30503 - 31081 543 192 aa, chain + ## HITS:1 COG:BS_yncB KEGG:ns NR:ns ## COG: BS_yncB COG1525 # Protein_GI_number: 16078825 # Func_class: L Replication, recombination and repair # Function: Micrococcal nuclease (thermonuclease) homologs # Organism: Bacillus subtilis # 56 191 72 206 211 155 55.0 3e-38 MKLFIGKKWLLLTAATLLLSGCASLEQKAQDISNDGTGNFTQTISNDNRIPAEFVRHVDG DTTVLRIDGKEQKVRFLLVDTPETVKPKTKVQPFGLEASKRTKELLSTASEITFEYDKGD RTDRYGRTLGYIFVDGMLLQETLVREGLARVAYVKKPNTKYLLELEEAQEKAKNESLGIW SIPGYVTERGFK >gi|307679321|gb|GL456406.1| GENE 36 31172 - 31492 181 106 aa, chain + ## HITS:1 COG:no KEGG:EF_B0046 NR:ns ## KEGG: EF_B0046 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 106 4 109 109 184 99.0 8e-46 MNEQINLFDSDIDKRYQFYGHYCNDDWSTKTAMVNGVSDIVMSFSIELTKVELKKICRDA IKIVRFKYGYSIKFLKNNVKKELFIRFDNYTTSKKRDVFEHINLYF >gi|307679321|gb|GL456406.1| GENE 37 31715 - 33175 895 486 aa, chain + ## HITS:1 COG:no KEGG:EF_B0047 NR:ns ## KEGG: EF_B0047 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 486 1 486 486 854 98.0 0 MNKFQSWLMANKNLLITSVVMCQVLVLSIGIINFPYIDDTGRQIDGNTDFARSYSRWGSE IGSWLVQGSRHLTDMGLWTHILSGFIVSVTGIIIVYSFHKKLSLLALTAAMLVGFNPWFL QNLSFRFDSPYMSLSLLFSVLPFLFWNKNKVLFLVISILSIFLMCNTYQASSGIYVVMVL ALSLKQLLDNQSFIAVLKKAIVAMISYISAMFLYLIETKFNPEIATRGGMTTIASVKDIP KTILVNSQMYLSKITEQSTKLWILLFFILVIFFVLSTVLNAKVSPVKSFLYAVLFLFLGS ILSYGVFLIFPEKLLLISPRYGYGFSFFVVSIIMLTLANTSKNVLGYVSKTAVCLFCVYL LSFTFVYASALSHQKESFERQSMILADDLKDLVNRDTVTVHSTSLFKDSPVFVNSSKNYP ILKELVPPNEALYWPNQFLFRTYTGLNVNMEIFDINALNKEESELMKSNYYHDIYVKDSE VFVHVK >gi|307679321|gb|GL456406.1| GENE 38 33766 - 33933 125 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307269455|ref|ZP_07550796.1| ## NR: gi|307269455|ref|ZP_07550796.1| hypothetical protein HMPREF9498_01590 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9498_01590 [Enterococcus faecalis TX4248] conserved hypothetical protein [Enterococcus faecalis TX0645] conserved hypothetical protein [Enterococcus faecalis TX0630] # 1 55 75 129 129 102 100.0 8e-21 MIIIGFLFQARRFVDIGWSKFVALLSLLPLVGIITTGICLFKKGKDNKTDSSQVS >gi|307679321|gb|GL456406.1| GENE 39 33953 - 34291 290 112 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|323481816|gb|ADX81253.1| ## NR: gi|323481816|gb|ADX81253.1| conserved hypothetical protein [Enterococcus faecalis 62] # 1 112 85 196 196 206 98.0 5e-52 MKVLKRNIFKAISALLLSTVVVSGVNIPFSSVVGVNSTTAYAQSDDGYWDNFAKSKVPKH LWNKYQQAKAKQGACIMKGIWSAVAFHKLSWSAAIQAAYNASSCHSFNRQYS >gi|307679321|gb|GL456406.1| GENE 40 34595 - 35254 332 219 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307289878|ref|ZP_07569810.1| ## NR: gi|307289878|ref|ZP_07569810.1| hypothetical protein HMPREF9509_00194 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9509_00194 [Enterococcus faecalis TX0411] # 1 219 1 219 219 387 100.0 1e-106 MEENNIESKDNLFKEIGEKMYPLFFNRNFGLATKSEIESILFYSYLKHKINSNGDYSDRT LSRELGISEVKVRNLKRTCYARYEDVIDFPKLLTSLSKEGSNLMFFKIYTDNNDVLCRIS ISEVVYYDELRTQLNNSGILFKKNPGSNYVELSMADAIIFFDQDPISKESLDLKSLIDKM KQLNFETNTKMDIDKILEGTKAGRMKNVVEAIMKLSNSI >gi|307679321|gb|GL456406.1| GENE 41 35360 - 35956 494 198 aa, chain + ## HITS:1 COG:PSLT045 KEGG:ns NR:ns ## COG: PSLT045 COG1961 # Protein_GI_number: 17233496 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Salmonella typhimurium LT2 # 1 184 1 177 186 107 37.0 1e-23 MAIYGYSRVSTSNQDYKTQIRKLEEAGAEKIFSEKYTGTKKEGRKELEELLSIVKAGDKV LVTKIDRLARSIVDLNSIISTLNHEGVTISFLDDHLTFEPDKKDSMQTLMMNMLGSFAQF ERDLIVTRTQEGKQWHRANNKNYREGRPKRVLNDKYKHALELMETNSMREVERKTGISLS TLKRIKKQAKEEQLLNEK >gi|307679321|gb|GL456406.1| GENE 42 35946 - 36093 79 49 aa, chain + ## HITS:1 COG:no KEGG:EFA0074 NR:ns ## KEGG: EFA0074 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 10 49 1 40 95 72 97.0 5e-12 MKNNSGVVIMENREKIIQLLKNPLVTGYGIEIMSNGRLYSANFQRYKNR Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:27:02 2011 Seq name: gi|307679320|gb|GL456407.1| Enterococcus faecalis TX0411 genomic scaffold Scfld17, whole genome shotgun sequence Length of sequence - 530 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 529 650 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases Predicted protein(s) >gi|307679320|gb|GL456407.1| GENE 1 1 - 529 650 176 aa, chain + ## HITS:1 COG:SPy1904 KEGG:ns NR:ns ## COG: SPy1904 COG0610 # Protein_GI_number: 15675717 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Streptococcus pyogenes M1 GAS # 26 146 356 476 992 113 46.0 2e-25 NSLIVGTGSAKELSETLLADANANVVIITTRQKLDAALKYAKKQEEKKGTNRFQKLMGQH IVFVVDECHRALSAENMEEIKKMFPKSTWFGFTGTPIFPENRKQAKGQLARTTHDQYGEV LHTYTIKNALEDGSVLGFQVEHENTVEPTSLENKIYRKLKEVETYAEYSSEQINRM Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:27:21 2011 Seq name: gi|307679319|gb|GL456408.1| Enterococcus faecalis TX0411 genomic scaffold Scfld20, whole genome shotgun sequence Length of sequence - 66742 bp Number of predicted genes - 71, with homology - 69 Number of transcription units - 42, operones - 21 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 83 - 355 236 ## EF0612 hypothetical protein 2 1 Op 2 . - CDS 414 - 632 269 ## gi|293384929|ref|ZP_06630764.1| conserved hypothetical protein - Prom 664 - 723 2.9 3 2 Op 1 . - CDS 771 - 929 65 ## gi|293384930|ref|ZP_06630765.1| conserved hypothetical protein 4 2 Op 2 . - CDS 940 - 1038 73 ## - Prom 1075 - 1134 5.7 - Term 1048 - 1106 2.7 5 3 Op 1 . - CDS 1154 - 2134 1089 ## COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog 6 3 Op 2 . - CDS 2147 - 3025 756 ## EF0617 hypothetical protein 7 3 Op 3 . - CDS 3041 - 3841 620 ## COG1378 Predicted transcriptional regulators - Prom 3971 - 4030 12.3 - Term 4004 - 4050 3.3 8 4 Tu 1 . - CDS 4118 - 4267 168 ## - Prom 4294 - 4353 7.0 + Prom 4742 - 4801 2.0 9 5 Op 1 . + CDS 4828 - 4998 155 ## EF0621 hypothetical protein + Term 4999 - 5025 0.3 10 5 Op 2 . + CDS 5057 - 5221 133 ## EF0622 hypothetical protein 11 5 Op 3 . + CDS 5154 - 5414 149 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 12 5 Op 4 . + CDS 5460 - 6005 287 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 13 5 Op 5 . + CDS 6019 - 6645 384 ## EF2268 hypothetical protein 14 5 Op 6 . + CDS 6716 - 7198 95 ## EF0625 hypothetical protein + Prom 8166 - 8225 4.6 15 6 Op 1 . + CDS 8321 - 9160 1114 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase 16 6 Op 2 . + CDS 9183 - 9665 698 ## EF0630 glyoxalase family protein + Term 9700 - 9744 8.2 + Prom 9693 - 9752 5.9 17 7 Tu 1 . + CDS 9831 - 11276 1143 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes + Term 11294 - 11334 7.1 + Prom 11763 - 11822 6.2 18 8 Tu 1 . + CDS 11974 - 13230 601 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 + Term 13333 - 13378 13.2 + Prom 13365 - 13424 9.2 19 9 Op 1 7/0.000 + CDS 13529 - 15391 2191 ## COG0076 Glutamate decarboxylase and related PLP-dependent proteins + Term 15524 - 15564 3.0 + Prom 15508 - 15567 3.4 20 9 Op 2 . + CDS 15594 - 17012 1544 ## COG0531 Amino acid transporters + Term 17075 - 17123 9.3 + Prom 17015 - 17074 3.3 21 10 Tu 1 . + CDS 17137 - 18543 1606 ## COG1757 Na+/H+ antiporter + Term 18573 - 18624 9.1 + Prom 18630 - 18689 4.9 22 11 Tu 1 . + CDS 18900 - 19817 1044 ## EF0637 hypothetical protein + Term 19828 - 19875 10.5 - Term 19810 - 19868 20.2 23 12 Op 1 . - CDS 19869 - 20318 595 ## COG4808 Uncharacterized protein conserved in bacteria - Prom 20378 - 20437 5.3 - Term 20408 - 20452 7.0 24 12 Op 2 . - CDS 20457 - 20963 718 ## COG1267 Phosphatidylglycerophosphatase A and related proteins - Prom 21028 - 21087 3.6 25 13 Tu 1 . - CDS 21095 - 22048 1308 ## COG0039 Malate/lactate dehydrogenases - Prom 22138 - 22197 6.6 + Prom 22129 - 22188 6.5 26 14 Op 1 . + CDS 22216 - 22578 233 ## EF0642 hypothetical protein 27 14 Op 2 . + CDS 22594 - 23004 362 ## EF0643 hypothetical protein + Term 23009 - 23059 11.1 - Term 22996 - 23046 11.1 28 15 Tu 1 . - CDS 23051 - 23878 755 ## COG0583 Transcriptional regulator - Prom 23951 - 24010 7.4 + Prom 23911 - 23970 7.6 29 16 Op 1 . + CDS 24020 - 24988 941 ## COG1275 Tellurite resistance protein and related permeases 30 16 Op 2 . + CDS 25009 - 25968 904 ## COG0451 Nucleoside-diphosphate-sugar epimerases + Term 25976 - 26011 4.0 - Term 25920 - 25963 2.4 31 17 Tu 1 . - CDS 25982 - 26329 297 ## COG1733 Predicted transcriptional regulators - Prom 26390 - 26449 4.5 + Prom 26199 - 26258 5.8 32 18 Tu 1 . + CDS 26441 - 27058 854 ## COG0778 Nitroreductase + Term 27098 - 27151 2.4 + Prom 27166 - 27225 2.3 33 19 Tu 1 . + CDS 27245 - 28258 1140 ## COG0095 Lipoate-protein ligase A + Term 28335 - 28373 -0.2 - Term 28253 - 28300 11.3 34 20 Op 1 . - CDS 28368 - 29216 754 ## Bfae_02570 Zn-dependent protease with chaperone function - Prom 29274 - 29333 5.0 35 20 Op 2 . - CDS 29405 - 29731 414 ## EF0652 hypothetical protein - Prom 29758 - 29817 7.1 + Prom 29722 - 29781 8.8 36 21 Op 1 . + CDS 29861 - 30139 202 ## EF0653 hypothetical protein 37 21 Op 2 . + CDS 30144 - 31079 868 ## COG1609 Transcriptional regulators + Prom 31116 - 31175 5.5 38 22 Op 1 . + CDS 31250 - 31846 833 ## COG3560 Predicted oxidoreductase related to nitroreductase 39 22 Op 2 . + CDS 31889 - 32734 1198 ## COG2514 Predicted ring-cleavage extradiol dioxygenase + Term 32748 - 32789 4.3 + Prom 32768 - 32827 4.0 40 23 Op 1 . + CDS 32863 - 33624 899 ## COG1349 Transcriptional regulators of sugar metabolism 41 23 Op 2 . + CDS 33637 - 35037 1383 ## EF0658 hypothetical protein 42 23 Op 3 . + CDS 35124 - 35774 702 ## COG1573 Uracil-DNA glycosylase + Prom 35777 - 35836 4.1 43 24 Op 1 . + CDS 35949 - 36092 140 ## EF0660 MATE efflux family protein 44 24 Op 2 . + CDS 36079 - 37281 934 ## COG0534 Na+-driven multidrug efflux pump + Term 37372 - 37415 -0.2 - Term 37253 - 37297 9.1 45 25 Tu 1 . - CDS 37306 - 39132 2094 ## COG1164 Oligoendopeptidase F - Prom 39276 - 39335 8.2 46 26 Tu 1 . + CDS 39260 - 39769 340 ## EF0662 hypothetical protein + Term 39774 - 39832 9.8 + Prom 39809 - 39868 2.6 47 27 Op 1 . + CDS 39900 - 40628 977 ## COG0217 Uncharacterized conserved protein + Term 40636 - 40662 -0.6 48 27 Op 2 . + CDS 40681 - 41151 487 ## EF0664 hypothetical protein + Term 41159 - 41222 23.0 - Term 41147 - 41210 23.0 49 28 Op 1 . - CDS 41227 - 41400 308 ## EF0665 hypothetical protein - Prom 41427 - 41486 6.6 - Term 41469 - 41511 10.1 50 28 Op 2 . - CDS 41513 - 42487 1004 ## COG0346 Lactoylglutathione lyase and related lyases + Prom 42408 - 42467 4.6 51 29 Op 1 . + CDS 42518 - 42724 203 ## EF0667 hypothetical protein 52 29 Op 2 . + CDS 42738 - 43091 301 ## EF0667 hypothetical protein + Term 43096 - 43144 10.6 - Term 43084 - 43132 6.4 53 30 Tu 1 . - CDS 43233 - 43655 425 ## COG0295 Cytidine deaminase - Prom 43681 - 43740 10.7 - Term 43726 - 43767 -0.1 54 31 Tu 1 . - CDS 43784 - 45304 1717 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase - Prom 45343 - 45402 6.7 + Prom 45420 - 45479 5.8 55 32 Tu 1 . + CDS 45508 - 47157 1717 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid + Term 47201 - 47249 6.4 + Prom 47179 - 47238 3.3 56 33 Tu 1 . + CDS 47266 - 48000 946 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases + Prom 48044 - 48103 6.4 57 34 Tu 1 . + CDS 48134 - 49549 2048 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases + Term 49551 - 49605 10.5 + Prom 49568 - 49627 4.0 58 35 Tu 1 . + CDS 49694 - 49927 444 ## EF0672 hypothetical protein + Term 50060 - 50113 12.5 59 36 Tu 1 . - CDS 50110 - 51069 697 ## COG3594 Fucose 4-O-acetylase and related acetyltransferases + Prom 51240 - 51299 3.3 60 37 Op 1 12/0.000 + CDS 51366 - 52319 1034 ## COG1125 ABC-type proline/glycine betaine transport systems, ATPase components 61 37 Op 2 . + CDS 52320 - 53837 1627 ## COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) + Term 53841 - 53912 14.2 + Prom 53896 - 53955 6.4 62 38 Op 1 . + CDS 53979 - 54434 689 ## COG1438 Arginine repressor 63 38 Op 2 . + CDS 54468 - 55976 1471 ## COG1109 Phosphomannomutase 64 38 Op 3 . + CDS 56000 - 56554 460 ## PROTEIN SUPPORTED gi|116334854|ref|YP_796381.1| acetyltransferase + Term 56637 - 56684 15.3 - Term 56625 - 56672 15.3 65 39 Tu 1 . - CDS 56678 - 57541 534 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit - Prom 57655 - 57714 6.4 + Prom 57645 - 57704 8.7 66 40 Op 1 . + CDS 57884 - 60070 2586 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) 67 40 Op 2 2/0.444 + CDS 60133 - 60474 583 ## COG3679 Uncharacterized conserved protein + Term 60486 - 60538 15.1 + Prom 60550 - 60609 5.1 68 41 Op 1 5/0.000 + CDS 60630 - 61865 1307 ## COG0420 DNA repair exonuclease 69 41 Op 2 3/0.222 + CDS 61862 - 64573 2886 ## COG4717 Uncharacterized conserved protein 70 41 Op 3 . + CDS 64570 - 65514 1045 ## COG3481 Predicted HD-superfamily hydrolase + Term 65520 - 65557 6.2 - Term 65509 - 65543 4.5 71 42 Tu 1 . - CDS 65554 - 66582 1368 ## COG0760 Parvulin-like peptidyl-prolyl isomerase - Prom 66662 - 66721 9.9 Predicted protein(s) >gi|307679319|gb|GL456408.1| GENE 1 83 - 355 236 90 aa, chain - ## HITS:1 COG:no KEGG:EF0612 NR:ns ## KEGG: EF0612 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 19 59 5 45 91 71 85.0 1e-11 MWDRVALPRPVTQTFAIWFGISFFGGIFRIFPFVMEHTITRQIFCPWLFAFLMTRKQFQS LSSHISSHIFHHTHISWLAEKGYPLKAIMD >gi|307679319|gb|GL456408.1| GENE 2 414 - 632 269 72 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293384929|ref|ZP_06630764.1| ## NR: gi|293384929|ref|ZP_06630764.1| conserved hypothetical protein [Enterococcus faecalis R712] conserved hypothetical protein [Enterococcus faecalis S613] conserved domain protein [Enterococcus faecalis DAPTO 512] conserved domain protein [Enterococcus faecalis DAPTO 516] conserved hypothetical protein [Enterococcus faecalis R712] conserved hypothetical protein [Enterococcus faecalis S613] conserved domain protein [Enterococcus faecalis DAPTO 512] conserved domain protein [Enterococcus faecalis DAPTO 516] # 3 72 12 81 81 129 100.0 8e-29 MNFFQNVFTDFVGDFKYLIMLAMLDGAAYIAFERKASKAIPLILVLAVAVWLVGDTSDVF NWILDRMRSWGR >gi|307679319|gb|GL456408.1| GENE 3 771 - 929 65 52 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293384930|ref|ZP_06630765.1| ## NR: gi|293384930|ref|ZP_06630765.1| conserved hypothetical protein [Enterococcus faecalis R712] conserved hypothetical protein [Enterococcus faecalis R712] # 1 52 26 77 77 91 98.0 2e-17 MIEGTYDKKSGKYFYDFYSMKLDPKTKKSKQHRIYCTHVPVKVMYRRVRNYL >gi|307679319|gb|GL456408.1| GENE 4 940 - 1038 73 32 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFMTVSDHLKVLGFVPLSSRGKYQLYLLDLPP >gi|307679319|gb|GL456408.1| GENE 5 1154 - 2134 1089 326 aa, chain - ## HITS:1 COG:MA3252 KEGG:ns NR:ns ## COG: MA3252 COG2423 # Protein_GI_number: 20092068 # Func_class: E Amino acid transport and metabolism # Function: Predicted ornithine cyclodeaminase, mu-crystallin homolog # Organism: Methanosarcina acetivorans str.C2A # 1 325 3 323 326 184 35.0 2e-46 MLFLKKEDIIKSFSMREAIDADKKALSLYSAGKASVPLRTNIDVPKSNGQSLYMPAYVEG GEGALGVKIVSVYPENIKKNLPSVPATMIVLDPETGMVSACLDGTYLTQLRTGAVQGAAT ELLAKEDAKIGALIGTGGQAQSQLEAMLTVRKLEEVRIFDIDFERASQFAEEMMQQFSVT MRPTKTNQECVEGADIITSVTTSKRATFSAEWVKKGAHINGVGAYTPEMCEIPREIIKAA DIVIFDTMDGVLKEAGDFISPLQDGYIQRDSYHGELGQLINEELVGRTSGEQITIFKTVG SAVLDVVVATEIVKKAKENNLGKLIY >gi|307679319|gb|GL456408.1| GENE 6 2147 - 3025 756 292 aa, chain - ## HITS:1 COG:no KEGG:EF0617 NR:ns ## KEGG: EF0617 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 292 1 292 292 491 99.0 1e-137 MIRNILLALIVAINLYFIIYFLRDLFKNKQNFKEEPGDMRLLPFTSFITFFLSTFGVSDF AIGTVLYPKLKWVSMKKLPGTLNTQCVVPVAVMALSYITAINVGIKTLAVCIICQIIGAY LGPRFVVKLPEKTIKLFVGIGLVIAAFLIFMGQMNWIPSNGTASELYGGKLILAGFLLFV YGALNNIGIGSYALTMVTVYLLGLNPVAAFPIMMGACTFSVPIGSVQFIKFDEYSRKITL FTSTFGVLGVLVAVFLVKSLDTYILKWIVILVLLYSAYTMLSSQLKKATATN >gi|307679319|gb|GL456408.1| GENE 7 3041 - 3841 620 266 aa, chain - ## HITS:1 COG:BS_yrhO KEGG:ns NR:ns ## COG: BS_yrhO COG1378 # Protein_GI_number: 16079765 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 2 266 3 263 275 102 24.0 1e-21 METIIQIMKKYDFSEMETRVYTTLLEKGNLTGYEVSKISGVPRSKVYNILEKLLKKNLIV VNKSEPKLYHAISANEFLEKLEKSVKNDLSFLTKNLGMIKEKDEEDMLWKVDGIEYVLDK AEHLVKNAKESLLIQVWHENLTDSLLKALQQAEKRVDKFVLILFSSTHEYDLPLEKYYIH GFETDKLADFGARWINIVADEQEVVFGTINEELQSTDVTWTKNHAMVNLAKEYVKHDAYT LKVIAESSEELKAKYGEDFEGIRKIY >gi|307679319|gb|GL456408.1| GENE 8 4118 - 4267 168 49 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKKGIPYCPKPRNTFERGLFKYFEGKKGQDLKEENQKKKSKKKSEYVF >gi|307679319|gb|GL456408.1| GENE 9 4828 - 4998 155 56 aa, chain + ## HITS:1 COG:no KEGG:EF0621 NR:ns ## KEGG: EF0621 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 56 1 56 56 84 91.0 2e-15 MPIPNQFIDYPLARIKDSIVRKQINPALYPNKLYGNRSWDTFYRYDNQLVYESSYY >gi|307679319|gb|GL456408.1| GENE 10 5057 - 5221 133 54 aa, chain + ## HITS:1 COG:no KEGG:EF0622 NR:ns ## KEGG: EF0622 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 54 1 54 54 88 96.0 7e-17 MKTITLYEILGEEGSDKYISVFKSLIVSNFTENEDILSRCQLFIHNNASAEENL >gi|307679319|gb|GL456408.1| GENE 11 5154 - 5414 149 86 aa, chain + ## HITS:1 COG:SP0325 KEGG:ns NR:ns ## COG: SP0325 COG3716 # Protein_GI_number: 15900257 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Streptococcus pneumoniae TIGR4 # 5 86 31 112 272 94 54.0 3e-20 MKTFYQGVSYLYTIMPALKKIYKDEPEKLKETASANLEFYNTNPQMLPFITSMQLAMYDN DQSVSDTRSIKMALMGPLSGIGDSIA >gi|307679319|gb|GL456408.1| GENE 12 5460 - 6005 287 181 aa, chain + ## HITS:1 COG:SP0325 KEGG:ns NR:ns ## COG: SP0325 COG3716 # Protein_GI_number: 15900257 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Streptococcus pneumoniae TIGR4 # 2 129 130 259 272 111 45.0 9e-25 MDGLGFAPMGFWLSMLISMLVIKLLMGYLGFKLGTSVIETLSDKIGKISSAANIVGVTVI AALATSFVKANIAIKYSHNVESGEKQVIAIQDILDKITPKMLPVILTILVFYLIKKRKWN TYQLLIFFICDWDSSLCLRDFSIVSERSKGQGFRFRVNLVSLFISFLSDGHNIFSVNGNK I >gi|307679319|gb|GL456408.1| GENE 13 6019 - 6645 384 208 aa, chain + ## HITS:1 COG:no KEGG:EF2268 NR:ns ## KEGG: EF2268 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 204 1 204 642 351 82.0 1e-95 MNLQKIENYQLKFYQQDWLSGYLEKHSKLLEPLFERTYFLLKDQIIYNDAMDMEACSIPY SLKEYTWNRYPGDDPEWLFMLSRQSFLLDLSQAYALTKEKCYLQKWRSLLLDFIQEEGEP NSTNRNVWRPLDVGIRVMNWLKSLTYISIADYKQLGIDKVLRNALLVHLEYLERSYIDKY RLSNWGVLVTGGMAAMDLFLPELVNRVN >gi|307679319|gb|GL456408.1| GENE 14 6716 - 7198 95 160 aa, chain + ## HITS:1 COG:no KEGG:EF0625 NR:ns ## KEGG: EF0625 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 160 47 206 228 303 95.0 1e-81 MYQYEVLMTYVYLLQISEYLEISLPLDLRTKLKIPILSTYYIADNQDVLNPINDSDHVNF RYVYDSYRNMKKELGKHCSQRNFFRGESSGLMFYKTEDIYFTLFNGLYGSSHGHVSTGSF TLQLQGDDLISDSGCYSYVNKAEWLQPKECDSHNTMFIKD >gi|307679319|gb|GL456408.1| GENE 15 8321 - 9160 1114 279 aa, chain + ## HITS:1 COG:L132617 KEGG:ns NR:ns ## COG: L132617 COG0656 # Protein_GI_number: 15672315 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Lactococcus lactis # 11 279 3 272 272 350 67.0 2e-96 MITSLADTVTLNNGTKIPGMGLGVFQIPDEETAKVVEEGIINGYRLIDTAQIYGNESGTG AGIKAGLAATGLNREDLFVTSKVWNAHISYDETIQAFNDSLERLGLDYLDLYLIHWPGNN SYKESWQALETLYAEGKVKAIGVSNFQVHHLEDLLSYAKVVPVINQVELHPKLDQKEVRD FCEKHDIKVQAWSPLMQGQLLSNETILAIAENHNKSAAQVILRWDIQQDILLAVKSVHKE RMISNAAVFDFELSAEEMAQINQLNESLRVGPDPDTFDF >gi|307679319|gb|GL456408.1| GENE 16 9183 - 9665 698 160 aa, chain + ## HITS:1 COG:no KEGG:EF0630 NR:ns ## KEGG: EF0630 # Name: not_defined # Def: glyoxalase family protein # Organism: E.faecalis # Pathway: not_defined # 1 160 1 160 160 312 99.0 2e-84 MSEAVKGFSVVNHVGITVSNLDESVKFYEALTGTKIANRDEIGGKRMAQTQGLDDTLIKY ANVHLENINIDLLEYVKPKSEKASYSNEQISAMHMCFEVEDIDAAVARLRAIGVEPDGEP ITFQEEDGLKSGFGTGVAYFTDPDGTNLELIAPKGPFTRN >gi|307679319|gb|GL456408.1| GENE 17 9831 - 11276 1143 481 aa, chain + ## HITS:1 COG:lin2646 KEGG:ns NR:ns ## COG: lin2646 COG1502 # Protein_GI_number: 16801708 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Listeria innocua # 13 481 15 482 482 455 47.0 1e-128 MILSVLTVIYFINAIIAGITILLKPRDVAAIWAWLLVLIALPVFGFFLYLFFGRGLTDKK KFYLQQSDLRELENFQNFQEESFELYSQKMPTEEQQQFTDFFSSLNRMPLTKKNDVEIFT DGTEKFNALMADIKKAQHSIHIEYYAFVTDHIGTKILNLLEEKAAEGVEVRLLYDAFGSK GTKVHHLNELKKNGGFVQTFITSQKALLKFRLNYHDHRKIVVIDGKVGYIGGFNVADQYA GTTKKFGYWRDTHLRIQGPAASLLQMRFLMDWNVSSPEKNRVAYQLDYFFKLEALVPEAN TSIQMIASGPNSDREQIKLAFIKLITSAKKRVWIQTPYLVPDDSVLAALKVAAASGVDVK IMIPDKPDHPFIYRATQYYGRLLMKENIEILIYNGGFLHAKTMIMDDEVCTVGSANQDIR SYKLNFEANAVLYDKKIIDQLEAIFLEDRKKCTTMTPEVVRDMSKWLIFKQQISRLFSPI L >gi|307679319|gb|GL456408.1| GENE 18 11974 - 13230 601 418 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 10 392 16 394 418 236 36 3e-61 MNIIDELAWRDAINQQTNEEGLRELTENTSISLYCGVDPTGDSMHIGHLIPFMMMKRFQL AGHHPYILIGGGTGTIGDPSGRTTERVLQTMEAVQHNVDSLSNQMKKLFGKDAEVTMVNN YDWLSELSLLDFLRDYGKNFNVNTMLAKDIVASRLESGISFTEFTYQILQSIDFYTLHKK HNIQLQIGGADQWGNITAGLDLIRKKEGPEAKVFGLTIPLMLKADGTKFGKTAGGAIWLD PKKTSPFEFYQFWLNQDDRDVIKYLKFFTFLDKEEIDALAEKVEKEPGKREAQRRLAEEV TRFVHDDAALEEAQKISEALFSGNIKDLTIEEIEQGLEHVPTVEITKDAKNIVDWLVDTE IEPSKRQAREDVSGGAISINGDRVTDLDFAVDPTQHFDGKFVVVRKGKKNYFLAKVMD >gi|307679319|gb|GL456408.1| GENE 19 13529 - 15391 2191 620 aa, chain + ## HITS:1 COG:VC1149 KEGG:ns NR:ns ## COG: VC1149 COG0076 # Protein_GI_number: 15641162 # Func_class: E Amino acid transport and metabolism # Function: Glutamate decarboxylase and related PLP-dependent proteins # Organism: Vibrio cholerae # 84 510 87 442 548 120 27.0 1e-26 MKNEKLAKGEMNLNALFIGDKAENGQLYKDLLIDLVDEHLGWRQNYMPQDMPVISSQERT SESYEKTVNHMKDVLNEISSRMRTHSVPWHTAGRYWGHMNSETLMPSLLAYNFAMLWNGN NVAYESSPATSQMEEEVGHEFAHLMSYKNGWGHIVADGSLANLEGLWYARNIKSLPFAMK EVKPELVAGKSDWELLNMPTKEIMDLLESAEDEIDEIKAHSARSGKHLQAIGKWLVPQTK HYSWLKAADIIGIGLDQVIPVPVDHNYRMDINELEKIVRGLAEEQIPVLGVVGVVGSTEE GAVDSIDKIIALRDELMKDGIYYYVHVDAAYGGYGRAIFLDEDNNFIPYEDLQDVHEEYG VFKEKKEHISREVYDAYKAIELAESVTIDPHKMGYIPYSAGGIVIQDIRMRDVISYFATY VFEKGADIPALLGAYILEGSKAGATAASVWAAHHVLPLNVAGYGKLIGASIEGSHHFYNF LNDLTFKVGDKEIEVHTLTHPDFNMVDYVFKEKGNDDLVAMNKLNHDVYDYASYVKGNIY NNEFITSHTDFAIPDYGNSPLKFVNSLGFSDEEWNRAGKVTVLRAAVMTPYMNDKEEFDV YAPKIQAALQEKLEQIYDVK >gi|307679319|gb|GL456408.1| GENE 20 15594 - 17012 1544 472 aa, chain + ## HITS:1 COG:BMEII0909 KEGG:ns NR:ns ## COG: BMEII0909 COG0531 # Protein_GI_number: 17989254 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Brucella melitensis # 5 464 20 484 510 175 26.0 2e-43 MDKQQVKKIELGTFIGLTMALCATVRSIPTLAAVGWTLISYTIFAVLFFAGPIALISGEL STMLPQEGGPQLWVKTALGSKWGFVVAWLLWVQMFPGMVMVASTLGPLLGNTFGNVHLGE NHWFVLGCILVIYWIITILNLKFDMAKVGGNIGVWLGVYIPVLVMFVLGLLSMIKVGLTP GGYLGAFSWSKVLPNLENMDTFKYLAGIAFIFVGIEMSSVYIPRLKDATKNYTKGVFISL IGLVLLNVINAMFVANIVPNGKMELSNITQPILLYCDVLGLPTIIGNIFSFMVFLGVLLQ LSAWVTGPSKTIIQVARDGLLPPKFGFHRENKYGVSRNVVLTQSVVISLFALLYGVMDDV NAVFLTLTNATTIIYSIVYVLIAISLIKLRKSQPDTLRPYRIGKKGNGLAYLVAAMLIFS VIIVIFATLGTTTVTDAVLVALITIVMFVIPLIINRFKKASWATEVKEDLGE >gi|307679319|gb|GL456408.1| GENE 21 17137 - 18543 1606 468 aa, chain + ## HITS:1 COG:NMA0715 KEGG:ns NR:ns ## COG: NMA0715 COG1757 # Protein_GI_number: 15793692 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Neisseria meningitidis Z2491 # 11 448 13 450 459 308 40.0 2e-83 MKSTKPTVSFAESLGILVALLAILGYLIIGQKLTPHIPILFVFMLLLLYGKWKGFSWDEI HEGIVEGIKPGIIPIIIFLLIGVLVATWILSGTIPTIMVYGFKIISVKFFLPTVFVVCAL VGVTVGSSFTTVSTMGIAFLGIGHILGFDNAMTAGAVVSGAFLGNNISPLSDTTNLAAGI GGVNLFEHILNMMYTVIPAFIISIVGYIFLGHQSGSADLQSVDAMVQTLHQGFWISPITL LPVAVLFLFAWKKVPAIPTLLVGSTVAVILAFINDHHLSLAKVSTILMSGYVADTGDQSI DTLLSRGGIESMLGSAALIILALGLGGLLIKFNIVATLIDKIKGYVNNPAKLIALTALSS VGINLLVGEQYLSIILPGETFKSSFTRLGIDKKYLTRTLADAGAAVNSLIPWGVSGTFIM GTLKVGALEYLPYAFFPLLCPVITVILGIFLKKQQGENKKAPGTNVEL >gi|307679319|gb|GL456408.1| GENE 22 18900 - 19817 1044 305 aa, chain + ## HITS:1 COG:no KEGG:EF0637 NR:ns ## KEGG: EF0637 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 305 1 305 305 446 98.0 1e-124 MKKIGLISSAFLLTLALAACGGGKSTENTDSRSSAAESTTFESTKASATKESSSKAATKS SDAKPSGTTIADSKATASSTKEAANNGSAEKQSPAKNANPDDQANQVLNQLANMFPGQGL PQAILTSQTNNFLTAATTSQADQNNFRVLYYAEKEAIPVNDARVNQLTPISSFEKKTYGS DAEAKNAVNQIIDNGGQPVDLGYNITGYKQGAAGSSYLSWQEGNWSLVVRASNINGESPD DLAKNVVNILEQETLPAPNTVGQITLNVAGTTDYNRNSVVWQAGTVVYSVHHFDPIQAVK MATSI >gi|307679319|gb|GL456408.1| GENE 23 19869 - 20318 595 149 aa, chain - ## HITS:1 COG:STM2156 KEGG:ns NR:ns ## COG: STM2156 COG4808 # Protein_GI_number: 16765485 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 3 149 6 152 152 105 43.0 2e-23 MKKFLRVFLIFIGVFFLASCGSKIETKTFVGSPQDGIDSTLTYTYQGDKVLTQTAKNIVS YDKLGITKEEAKTALEPVSKQYEDIKGLDYKLTYEDKQAIEKLTINYEKLDYDKAKKVDG IQIDGDSSKGISMKKSQELVESEGYTEQK >gi|307679319|gb|GL456408.1| GENE 24 20457 - 20963 718 168 aa, chain - ## HITS:1 COG:lin2497 KEGG:ns NR:ns ## COG: lin2497 COG1267 # Protein_GI_number: 16801559 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylglycerophosphatase A and related proteins # Organism: Listeria innocua # 1 162 1 162 166 196 67.0 1e-50 MVIQGDTLENSARRLLQERGVTMNDLAELVLFLQKDYIDNLTLDTCLESVDAVLTKREVH NAIITGVQLDILAEENKLLSPLQEILTEDEGLYGIDEIMALSIVNVYGSIGFTNYGYIDK VKPGILKELNAHDGEHVHTFLDDIVGAIAAAAASRLAHSQPDLSDITK >gi|307679319|gb|GL456408.1| GENE 25 21095 - 22048 1308 317 aa, chain - ## HITS:1 COG:L0018 KEGG:ns NR:ns ## COG: L0018 COG0039 # Protein_GI_number: 15672358 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Lactococcus lactis # 1 314 1 314 314 450 71.0 1e-126 MKVFNKKVAIIGTGFVGTSIAYSMINQGIANELILVDIDKAKSEGEAIDLLDGVSWGQEN VNVWAGDYQDCQDADIVVITAGANQKPGQSRLDLVSINAEIMKTIVNNIMKSGFDGILVI ASNPVDVLTYVAWQASGLPVSRVIGTGTTLDTTRFRKELSQRLAIDPRNVHGYIIGEHGD SEVAVWSHTMIGTKPILEIVDTTERLTSDDLPIISDKVKNTAYEIIDRKQATYYGIGMST ARIVKAILNNEQAILPVSAYLDGQYGQQDVFTGIPAVVGNQGVTDIIELNLNAAEKELFQ KSVTQLKQVMASLQPNA >gi|307679319|gb|GL456408.1| GENE 26 22216 - 22578 233 120 aa, chain + ## HITS:1 COG:no KEGG:EF0642 NR:ns ## KEGG: EF0642 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 120 1 120 120 207 97.0 1e-52 MTTTTVYYASNNEKQPNCFQLVIGSCSYELPKIEIYEILECVASAYGYQKEPCIEEQTEC FVKGNRCIHVSQQAMTLTFVVNDLRLVMEKQCRNHEEVFQEVNHILLNIFEETPCVFLEK >gi|307679319|gb|GL456408.1| GENE 27 22594 - 23004 362 136 aa, chain + ## HITS:1 COG:no KEGG:EF0643 NR:ns ## KEGG: EF0643 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 136 1 136 136 203 97.0 1e-51 MKQVKITTTSDLINGGCNACPNVKCTNYLVHVEDETIALETLTVADLVTLLALKEGFRQK LVMEMFEEYTMFERETHQVVFKEEETRILFQSKKQTIQSTLLSKEPQQVFQETQQILHQL FELEPFEFELVEETDK >gi|307679319|gb|GL456408.1| GENE 28 23051 - 23878 755 275 aa, chain - ## HITS:1 COG:L0220 KEGG:ns NR:ns ## COG: L0220 COG0583 # Protein_GI_number: 15672356 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 241 1 242 272 153 35.0 3e-37 MFEWIKTFIAVYETKNFSAAAKQLYISQPTVSLQIKKLEQHFSIKLFYRNGKQSVIPTKE ADFLYPKMLSIIESLTTSFAQAAEKENFKEDCIIASSNTVAIYLLPDIMESLVTAFPLIN FSIQLMNSNEVVDMVQNNHAHIGLIEKPIETKNLHKEIVYEDQLVLAGDAASKFWLLREK NSGLRFFNELYLNEHSINLPIIELNNNEVLLQLLKNNIGQSIVSRLSISDEIPWQPIDQS FASRKIFIVQTDHHANTSFSEVYNRIVEKIRERQT >gi|307679319|gb|GL456408.1| GENE 29 24020 - 24988 941 322 aa, chain + ## HITS:1 COG:L181867 KEGG:ns NR:ns ## COG: L181867 COG1275 # Protein_GI_number: 15672360 # Func_class: P Inorganic ion transport and metabolism # Function: Tellurite resistance protein and related permeases # Organism: Lactococcus lactis # 8 309 9 307 324 250 53.0 2e-66 MVESAKKFLRKVPIPICGLILGIVSLGNLLYSLGYATIGTIYCVLGSLLMILVILKIIFT MKHALSTLDDPIIASVSPTFTMALMVICVFLDRIFTNAAWINVLWIGAVILHFILMIYFV AVHIFPTKIELEHIYPSWFITFVGIGVIPNTSQLFINELGKIVFWVALFFYLLLLPILIK RITKSKEMPESTIPLLTIMTAPGSLCLAGYISMGGHLYMPLVVFLLILSQCIYGIVVVNL YKIMQVTFYPSYAAFTFPLVISATALVKVKPLFAEKVGLTSLLNILSTFELLLAVAIVSY VFIRYCIFLFQRENNTKKVELN >gi|307679319|gb|GL456408.1| GENE 30 25009 - 25968 904 319 aa, chain + ## HITS:1 COG:L12335 KEGG:ns NR:ns ## COG: L12335 COG0451 # Protein_GI_number: 15672193 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Lactococcus lactis # 4 312 7 310 313 328 55.0 8e-90 MKKLLITGGAGFIGSNLANFYSQQYQVFVIDDLSMGRVSNLQQTEQLVFIKGSVTDQQLL DEVLSKHSFEYIFHLAAVASVASSVAQPLETHEVNFLSVLKILESIKKYQKELKRFVFAS SAAVYGAEPTLPKRETSVICPLSPYAIDKFAAERYVLNEYHLHGVPTSAVRFFNVYGPNQ NPASPYSGVLSILMDRYIQLEQGQASQFQIFGDGQQTRDFIYIEDVLTALDLVATKSEAL GHVYNVGTEVAISLNQLIEEMNQLVGLSLPVSYQKERDGDIKYSLSDSSALKGLGFSPVY SIQEGLQKYLKFTHNTQNR >gi|307679319|gb|GL456408.1| GENE 31 25982 - 26329 297 115 aa, chain - ## HITS:1 COG:alr2106 KEGG:ns NR:ns ## COG: alr2106 COG1733 # Protein_GI_number: 17229598 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Nostoc sp. PCC 7120 # 5 103 9 103 110 97 47.0 5e-21 MSQGETMTTDKQTSINLALSTINGKWKLSLMDELFQGTKRNGELMRALDGITQRVLTDRL REMEKDGLVHRESFNELPPRVEYTLTPEGYALYDALSSLCHWGETFAQKKARLNK >gi|307679319|gb|GL456408.1| GENE 32 26441 - 27058 854 205 aa, chain + ## HITS:1 COG:BS_yodC KEGG:ns NR:ns ## COG: BS_yodC COG0778 # Protein_GI_number: 16079013 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Bacillus subtilis # 5 204 6 202 202 129 37.0 3e-30 MMYQDVVRSRRSVRDFMPDVEIPKEELMAIIEEAMFAPNSTNLNSWRFLIVTEKEQKEAL YEVSMQQPAVKGAAAVIILLGDLTAYTVANADEISAKAVAQGTMTEEIRQGINENVSWYY DVSEEQKREWLMLDQGLVAMQLMLSAKDRGYDTVAMSGFKTEAVRKLFNIEDHLVNGLII PIGKAQTPGFETVRRDVSEVVTWLD >gi|307679319|gb|GL456408.1| GENE 33 27245 - 28258 1140 337 aa, chain + ## HITS:1 COG:lin0931 KEGG:ns NR:ns ## COG: lin0931 COG0095 # Protein_GI_number: 16800002 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Listeria innocua # 9 335 10 330 331 302 47.0 7e-82 MRYVIMQSRDIRENLATEDYLLNTLSFEEPLVLFYIQEPCVILGRNQNAYEEIDLAYARE KGIVITRRLSGGGAVYDDLGNVSFSFVVQEGHQAFGDFKAFTKPIIEALHKMGATGAEIS GRNDLLIDGKKFSGNAMYTKKGKMYTHGTLMYDVDLAEVQRVLTVSKKKIESKGTKSVRG RVTNLRPYLDEKYQKLTIEEFRNRLLMELFDVESLTEIAEKEYVLTKTDQQEIRKLVAEV YGNEAWIFGEAPKFTIKKEEKFKGGIVDARLTVEKGKIIELTIYGDYFAKKETAEIVAAL LGVDYQYSSIWQALAAFNFEDYFVNITKEEFVHLLVD >gi|307679319|gb|GL456408.1| GENE 34 28368 - 29216 754 282 aa, chain - ## HITS:1 COG:no KEGG:Bfae_02570 NR:ns ## KEGG: Bfae_02570 # Name: not_defined # Def: Zn-dependent protease with chaperone function # Organism: B.faecium # Pathway: not_defined # 16 274 53 326 441 135 30.0 2e-30 MCQPQEKKKEISVAKLRYRFELPMIIIGFVLLFLALGLVALLILSDLPIPDWLLIVLIAP IAPVIAFFTIRYMYMDTASNGVEITENQLPEIYSLYIDLAKEMGFGTKKLRMPRLYLING NGVLNAFAAKCSLHRRYVVIHSDLLDIAYNTGDFSLIRFILAHELGHHKCGHTNLWRLML SIILKPVALDKSFTRTQEYTADRAGLYYAEEGALSMIYLFSGKYMGSRVDLEEYFHSIDL HDDTIWLKLSNFLSDHPVGFRRMQTLKKAKDTGNWDVHGKFF >gi|307679319|gb|GL456408.1| GENE 35 29405 - 29731 414 108 aa, chain - ## HITS:1 COG:no KEGG:EF0652 NR:ns ## KEGG: EF0652 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 108 1 108 108 170 99.0 2e-41 METVTVATKSDLLTNLNKQTDEIIISGALAQEIYHLKKQQLTETEEMGFLVGSQGAGSFL TYLIEKLSYINSELSPEEQKIEHAILRLYVIKKLTPETTLLRLKQLDY >gi|307679319|gb|GL456408.1| GENE 36 29861 - 30139 202 92 aa, chain + ## HITS:1 COG:no KEGG:EF0653 NR:ns ## KEGG: EF0653 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 91 1 91 92 166 97.0 2e-40 MNVIVEISDRLGMDYYFVSVTTTEKSLQLNSPKKYYKIWHQEIPYHQITEWHLTQQEDIQ EISFAWQETFYRFIDYGTGIVPYLTQFCKVMG >gi|307679319|gb|GL456408.1| GENE 37 30144 - 31079 868 311 aa, chain + ## HITS:1 COG:lin2880 KEGG:ns NR:ns ## COG: lin2880 COG1609 # Protein_GI_number: 16801940 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 305 1 316 318 248 40.0 1e-65 MTTIREIARLSGSSVTTVSRVINHHPYVSEEKRLKIQAIIDELGYKPNILARNLSFGKSN TLGVMVPYTNQPYFDAILSGIIHQAFQQGMMVSLLPTDYDKEVEKSYLEKMATGAFDGMI VLSKANPLSVFAPYKEQVVFCEKIEDPSYASIYIDRLTVYRRVFQALKQQGCSEVAITIN RAPEKSTSARYLVDAYQEIYGAIPENRLFKDCLTYEDGCEVGRHCGQDPTLQAVVTNGDE IAAGIQAVIERPLFLVGQEQTLLSEILNFSTICHPLMELGEKATHLFQEKRPKTIQLTST FINRQPDFSFS >gi|307679319|gb|GL456408.1| GENE 38 31250 - 31846 833 198 aa, chain + ## HITS:1 COG:BMEII0772 KEGG:ns NR:ns ## COG: BMEII0772 COG3560 # Protein_GI_number: 17989117 # Func_class: R General function prediction only # Function: Predicted oxidoreductase related to nitroreductase # Organism: Brucella melitensis # 6 197 7 198 199 231 56.0 8e-61 MSKFTEMMKNRRSIYALGENLPISKEEVTALVKEVVRESPTAFNSQTQRVVFLFGDAHKK LWAMTEDALKPLTPAEAFPNTQAKLQGFAAGAGTILFFEDTDIVKNLQDSFPLYADNFPV WSEQATGLTQANVWTALAQENIGANLQHYNPVIDEAVAAEWSIPANWNLRAQMVIGSIEA PAGEKEYMEDSARFKEFN >gi|307679319|gb|GL456408.1| GENE 39 31889 - 32734 1198 281 aa, chain + ## HITS:1 COG:lin0649 KEGG:ns NR:ns ## COG: lin0649 COG2514 # Protein_GI_number: 16799724 # Func_class: R General function prediction only # Function: Predicted ring-cleavage extradiol dioxygenase # Organism: Listeria innocua # 13 279 12 278 279 186 41.0 4e-47 MVQALPSNIGIQQVTLKVADLDKMVNFYTKTIGLKLLKQGEGRAWLAPQGTNDAILVLKE LTAGEENQGTTGLYHIAFLLPTRKDLGNMLLWLLQENVQIGAADHGYSEALYLSDPENNG IEIYWDKPEEVWDIRPNGEIIGVTEELDGDSLAAEADGHWLGISEGSKIGHIHLKVADLD ATETFYKNLGFGLKSNFGQQAKFFAAGQYHHHIGANTWSGKQLPTIQENQFGLENYTFRL PTAADLEIVQANAEEAKLHFIAKDHLLALEDPSGMIIQFTY >gi|307679319|gb|GL456408.1| GENE 40 32863 - 33624 899 253 aa, chain + ## HITS:1 COG:L0153 KEGG:ns NR:ns ## COG: L0153 COG1349 # Protein_GI_number: 15673279 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Lactococcus lactis # 1 253 1 253 253 243 51.0 3e-64 MLIEERLAKIQKIVNEQKSISMEALAEQVSVSKDTIRRDLIRLEKEGHLKRTHGGAISVQ SEATIYDYAQRIMKHPEKKQAIAQKVWANIPKQASIFFDSSTTVEAAIRAMENSPIHAIT NSLSHALLLAQMDQTKITVLPGQLHKQQLFLFGAETVAKVGEFAPDYTLLGVFALSEQGL FIHTEEEGQVKRRMIQQGKQVIALADQTKLNKTGLFKICELTEIDCLVTDTRPDEKFCEQ LAQAGVTLIVADE >gi|307679319|gb|GL456408.1| GENE 41 33637 - 35037 1383 466 aa, chain + ## HITS:1 COG:no KEGG:EF0658 NR:ns ## KEGG: EF0658 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 466 1 466 466 919 98.0 0 MKRKINYTHIAEPTVFENVFPTYLTNETMMARKQKVLQRMETEKFDQLVFYADKEHGSNF EYLTGFIPRFEEGLLVLNKDGMATLILGNENLKLCQHARISADLIHYPAFSLPNQPMDGE QKLSQIFETLLDETAQKIGIVGWKMFTTQQQEPATMFDVPHFIVEALKKALPKEARLLNG THLLIGAKGARTTNNANELAHYEYGANLASRSMLKALNAIEVGQRETDIGALLNDEGQMP TVVTIAATGQRFEYANMYPTAKEIQLGDALSLTTGYKGGLSSRTGFVIENEQQLPEAQRD YLERVAKPYFQAVVHWLETIRIGLLGREMYQAIEEQLPKEIYHWHLNPGHLVSDDEWMSS PIYPDSAIRLESGMLFQVDIIPSVPGYTGVSAEECVALANETLQKEIQQTYPDMWQRIAT RKAYLKETLKIDLPSEVLPMSNLVGYLRPFYLAKDKALCVEKPAPK >gi|307679319|gb|GL456408.1| GENE 42 35124 - 35774 702 216 aa, chain + ## HITS:1 COG:CAC0219 KEGG:ns NR:ns ## COG: CAC0219 COG1573 # Protein_GI_number: 15893511 # Func_class: L Replication, recombination and repair # Function: Uracil-DNA glycosylase # Organism: Clostridium acetobutylicum # 22 203 25 188 199 113 34.0 3e-25 MHYPEHLKQAVLAKAKDLPLEGFVEGQGPQQPKVMLIGEAPGKEEIKENVPFIGRSGQLL MEQLQQVGLSRETVYITSAVRSRPFSVKTKQIAKTGERVTKFPNRTPTKEEIKIFAPLLD WEIAVCQPELILTLGNIGLQRLLGPKPTITAVHGTVIQSPIQTFDEQSQNYHWTQKTYQI IPLFHPAAVFYNYRLKEVVKEDWQVVQKQLQLLKKV >gi|307679319|gb|GL456408.1| GENE 43 35949 - 36092 140 47 aa, chain + ## HITS:1 COG:no KEGG:EF0660 NR:ns ## KEGG: EF0660 # Name: not_defined # Def: MATE efflux family protein # Organism: E.faecalis # Pathway: not_defined # 1 34 1 34 446 70 100.0 2e-11 MEQTQQNHFTALFYKNVLLGILSMAAQSIFILADHCKWDRHRGIGGA >gi|307679319|gb|GL456408.1| GENE 44 36079 - 37281 934 400 aa, chain + ## HITS:1 COG:lin2192 KEGG:ns NR:ns ## COG: lin2192 COG0534 # Protein_GI_number: 16801257 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Listeria innocua # 1 395 51 443 443 162 28.0 7e-40 MAGLNIVLPLVNIINGLGWMFGVGGATLFSTTVAQKEIKKANQYFSLTIGLVFVIGSLFT LASLIFSDQIIRGLQGTGVLFGLAKEYYMIYLSCSLLFILNNCLITFLRNDHNPRLATIA FVSGGIVNIILDYVFIYQFGWGMAGAAIATVMSPLTSLILITLHKWSPQRVLRFEKFKVK FQDVREIMSIGFSSFLNEFSSAFVMFLFNIVLLNLVGHVAISAYAIVANLNIIVIAIFTG IGQGAQPLLSRYYGLGETKVLRKFVKLSFITYLVAGFLFFLISQVFTGQIIEVFNSEGND QLAQIARTAIRLYAISFLFTGLNFMGIYYFSAVRKPKMALMISSLRGFFLIVPVLFILVK LLGLTGVWLAMPVVEFVTFGLMLVGYLAYRNYLKKREAVT >gi|307679319|gb|GL456408.1| GENE 45 37306 - 39132 2094 608 aa, chain - ## HITS:1 COG:lin1528 KEGG:ns NR:ns ## COG: lin1528 COG1164 # Protein_GI_number: 16800596 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Listeria innocua # 9 607 5 601 602 575 49.0 1e-164 MKEGLDMTYSITWDLDSIFPNGSESKELSQRMTQLTEQTKEYHQLITEWTPESAQGKEQF AEILTLQGKISNGFSQCNSFLTALISANTNDTKAKILSGDLYNLLPAIQLAETIFTKKIT EISAEHWQDLLAEEPFKTMAFRLNELRRDGKKLLSEQEENIINTLSLDGLNAWSTHYDTI VASIVIPFEEKDGSVTELSAGQAFNRMMGDPDKEVRQRLFTAWEKAWSGKASILADTLNH LDGFRLSDYKLHGTTDYLENPLNYNRMSQETLTVMWETIQKNKQPFVDFLTRKAQLFGKE KMDWQDQDAPIILGDLEEKTYSFDQAAAFILENFRKFSPKMADFAQMAFEKSWIEAEDRP GKRPGGYCTELPETQESRIFMTFGNSINEVATLAHELGHAFHSSVMWDLPSLNREYAMNV AETASTFAELIVADATLKEAKSDVEKINLLDTKMQNAIAMFMNIHARFIFENNFYLARQK GLVAEEDITELMLAAQKESYKDSLGSYHPHFWASKLHFFIDDVPFYNFPYTFGYLFSMGI YAYANQQGSSFEDQYIALLRDTASMTSEELAKKHLNVDLTKPDFWQAGIDQVLKDVEQFM TLTENYVN >gi|307679319|gb|GL456408.1| GENE 46 39260 - 39769 340 169 aa, chain + ## HITS:1 COG:no KEGG:EF0662 NR:ns ## KEGG: EF0662 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 169 1 169 169 319 98.0 3e-86 MKNYLKDSNLYLVIAFVIMAILFFSSSQTYEQQSQVGLLDKLLSSHPFEEQLKNISFQYA GSEVSIQASGYSKFVEFFIRKGAHFGTYFLLGGSWFIGLVPRIKGLFLTAVVSWLAATGY AGLDEFHQMITGGRTPLFQDVMLDAMGALTAIVICLVVHGLKKNKKRRR >gi|307679319|gb|GL456408.1| GENE 47 39900 - 40628 977 242 aa, chain + ## HITS:1 COG:lin1570 KEGG:ns NR:ns ## COG: lin1570 COG0217 # Protein_GI_number: 16800638 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 240 1 239 241 297 62.0 1e-80 MSGHSKWSNIQGRKNAQDAKRGKIFQKVSREIYMAAKAGGPDPAMNPALRLAVDKAKSAN MPNDNIARAIKKASSAGEGEHYDEVTYEGYGPGGVAVLVHALTDNRNRTATNVRVAFTRN GGSLGETGSVNYMFDRKGYIVIKREDHEIEEDDMLEVVLEAGGEDLETSPEVFEIYTAPE DFTAVRDALEQAGYSLAQAELTMVPQTLLTLNDEQKAQLERLVDKLEDDDDVSEVFTSAE NL >gi|307679319|gb|GL456408.1| GENE 48 40681 - 41151 487 156 aa, chain + ## HITS:1 COG:no KEGG:EF0664 NR:ns ## KEGG: EF0664 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 156 1 156 156 295 100.0 3e-79 MEGILKKRICLQAIREEAEAYYRNGDFYCSEAIVATIRQHFDAEIPIEAVAMASGFPVGV GGAKCICGALSGGVMCLGYFFGRTEAKGEQVNKTMALANELHQSFRQKHRVVCCSILTSK MTMGSPEHMEQCIGFTGEIAETTAKIIARELAYELV >gi|307679319|gb|GL456408.1| GENE 49 41227 - 41400 308 57 aa, chain - ## HITS:1 COG:no KEGG:EF0665 NR:ns ## KEGG: EF0665 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 57 1 57 57 73 100.0 3e-12 MLSKEEVLHLLNEAKKEVDRLETNRQEDLGNSINYIENELQLQRVLSQVEAYEKVLG >gi|307679319|gb|GL456408.1| GENE 50 41513 - 42487 1004 324 aa, chain - ## HITS:1 COG:BS_ykcA KEGG:ns NR:ns ## COG: BS_ykcA COG0346 # Protein_GI_number: 16078352 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Bacillus subtilis # 5 318 6 312 316 183 37.0 4e-46 MYAQIHHISILNRLINPTFDFYHNTLGLKLLMKTINQDDHTMYHLFFSDNEQRTGTELTF FELNDGQDQSFGTNTIERTILKVPTRASLDFWAERLEQAGICHYGVETFNQHPILCFEAP DNTQMALVPLREFENAEDYFPAEHSEIPVEHAILGIDAIQLRVQYAAATKQPLVDYLHWH EKETVPFFETAHEVTVLENHHPQFYQEVHIIDDRTNPLAIEGIGGVHHVAFGVEDTQELT QVDSLLDEKNFTNSGIKDREFFKSLYFREPNHLLFEIATQKGLLDAEAYENQSSNFDEIP LYLPHFLADQRERIEAILAQQRHE >gi|307679319|gb|GL456408.1| GENE 51 42518 - 42724 203 68 aa, chain + ## HITS:1 COG:no KEGG:EF0667 NR:ns ## KEGG: EF0667 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 60 1 60 190 118 95.0 6e-26 MKQFFQKGSKPNQLVVAFHGTGGNEYQLLTTIATLYPEASVLSYLGTEGVGEQRRFFCAI SQWSITSC >gi|307679319|gb|GL456408.1| GENE 52 42738 - 43091 301 117 aa, chain + ## HITS:1 COG:no KEGG:EF0667 NR:ns ## KEGG: EF0667 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 117 74 190 190 226 99.0 2e-58 MTAFLEEVWQPQKLYDEVIFIGYSNGANFILGLLEKNPTIANTVILLHPSNLGYQYVSGE FATKVIVTTGAQDELSIPGQVLSLANQLKKHFPVDFLLVDGGHGLSEEEVTKIKEVL >gi|307679319|gb|GL456408.1| GENE 53 43233 - 43655 425 140 aa, chain - ## HITS:1 COG:SP2068 KEGG:ns NR:ns ## COG: SP2068 COG0295 # Protein_GI_number: 15901887 # Func_class: F Nucleotide transport and metabolism # Function: Cytidine deaminase # Organism: Streptococcus pneumoniae TIGR4 # 1 136 1 137 144 172 56.0 1e-43 MDIWKKMYEYAKKEYHPQEVTPFIYTHHVVCALEAEDGQLFTGFCFESCCGVLDLCAERV AALNMYADSEQTVIKRIITFRDDVPNGISGMPCGACRELLLQLSPKNADTEILVDYQKRE IVRLKELMPKWWGWSRYTND >gi|307679319|gb|GL456408.1| GENE 54 43784 - 45304 1717 506 aa, chain - ## HITS:1 COG:SPy0388 KEGG:ns NR:ns ## COG: SPy0388 COG0769 # Protein_GI_number: 15674533 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Streptococcus pyogenes M1 GAS # 3 501 2 478 481 455 50.0 1e-127 MTISLFAIRDCLEKEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFCKG LNFKEIYLENAVKDGLEIYVSEVPYEVPAQLGIIVTDIKKAMAVLSMAFYDYPQNKLKLI GFTGTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMA TAVANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQL ITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESP ADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESLTNTN GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGTVLSELADVA VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA DLYQKVNGVDEPYAGDFALAKMIIDK >gi|307679319|gb|GL456408.1| GENE 55 45508 - 47157 1717 549 aa, chain + ## HITS:1 COG:SP1529 KEGG:ns NR:ns ## COG: SP1529 COG2244 # Protein_GI_number: 15901374 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Streptococcus pneumoniae TIGR4 # 19 548 1 528 529 447 47.0 1e-125 MINQPNSVDQPILTNQEKMVKGSAWMTASNIISRMLGAIYIIPWYAWMGEHGNEANSLFS MGYTIYALFLMISTAGIPGAIAKQTSHYNSLNEYKISRQLFYRALQLMGGLGVVFAIVMY LASPALAALSGGGPELVPTMRSLSLAVLVFPSMSVIRGYFQGNQEMMPFALSQIVEQVAR VFYMLLTAFIIMKVFEGNYVTAVTQATFAAFIGMLASFAVLGYYMYKQKPLFDYLEEHSA NEHEIAPKELLIETFKEAIPFIVVGSGVTVFKLVDQFTFSNFMRLFTDYSDTQLRELFGI FNANPDKLTMIVVALATSISATGLPLITEAVTLKNHRELARLISNNLQLFVFVMLPATFG MIVLAQPLYTVFYMPDALGTSLLVQACYASLFLGLYMLVSNMLMGMYENRDAMRYLGIGL AVKLIVQFPAIRLFEVYGPLLATMIGFTVSCVLILRRIRQVTRFNYKLTLRRTLLMFCIT VIMMIIALIFRQFLYLFLDPTRRFQAFIIVVIVAAAGGAFYGYSVLKIRLADRLLGKNAA KLRAKFNIK >gi|307679319|gb|GL456408.1| GENE 56 47266 - 48000 946 244 aa, chain + ## HITS:1 COG:lin2436 KEGG:ns NR:ns ## COG: lin2436 COG1187 # Protein_GI_number: 16801498 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Listeria innocua # 1 239 1 233 233 268 59.0 6e-72 MRLDKFLADVGIGSRKEIKQLLKKKVVTVNGDVVKEAKTQVNEETDQIALMGEILTYQKF FYYMLHKPQGVISATEDQRDETVIDLLTDQDYRADLFPVGRLDKDTEGLLLLTNDGQLAH QLLSPKKHVDKEYLAEVEGLVTVEDCQLFAQGFALKDGEMVKPSRLVIETINEEEGTSVV RLVIQEGKFHQVKRMLATVGKPVTYLKRLRMGELWLDETLELGEYRPLTEAELQQLQPKQ SYLN >gi|307679319|gb|GL456408.1| GENE 57 48134 - 49549 2048 471 aa, chain + ## HITS:1 COG:SPy1070 KEGG:ns NR:ns ## COG: SPy1070 COG0624 # Protein_GI_number: 15675062 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Streptococcus pyogenes M1 GAS # 2 471 3 469 469 551 58.0 1e-156 MTIDWTKEVEARKDDLLEDLQNLLRINSERDDAQATPEAPFGPGPVAGLKHMLAYGERDG FTVKNVDNYAGHIEYGEGDETLGIFGHMDVVPAGDGWETDPYEPVIKDGKIYARGASDDK GPSMAAYYAMKIIKELGLPVSKKIRFVVGSDEESGWGDMDYYFQHEEAPDFGFSPDAEFP IINGEKGNVTIRLTFRGGNGADYKLESFKSGLRENMVPGTADAVVTAASADEAASLAASF ETFIKQEAKISGNAELSDKTVTFHVVGKGAHGASPQSGINAATFLATFLNDYSFAEGAYS FINTIAEFIHEDFYGEKLGVAFEDEKMGKLTMNAGIVNFDPENPENSLVTLNFRYPKGTS AEELQAKVQATVGETVTATQGDRNQEPHYVPVDDPLVATLLQVYEDHTGEKGQEQIIGGG TYGRLLKRGVAYGAMFPGYTDTMHQANEFMELDDLFRAAAIYADAIYRLAK >gi|307679319|gb|GL456408.1| GENE 58 49694 - 49927 444 77 aa, chain + ## HITS:1 COG:no KEGG:EF0672 NR:ns ## KEGG: EF0672 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 77 1 77 77 129 98.0 4e-29 MSETLIVNYLIKGRVKMNVEELVQKAKDLIGEGNVEHAQQFIEEHKDELGEHYHKITAML ADTTTDDLFDKIKGLFQ >gi|307679319|gb|GL456408.1| GENE 59 50110 - 51069 697 319 aa, chain - ## HITS:1 COG:lin0994 KEGG:ns NR:ns ## COG: lin0994 COG3594 # Protein_GI_number: 16800063 # Func_class: G Carbohydrate transport and metabolism # Function: Fucose 4-O-acetylase and related acetyltransferases # Organism: Listeria innocua # 1 266 23 288 343 86 28.0 6e-17 MIFGHILDREASPSRLMETINFWIYSFHMSAFIFVSGLFSKHAIKQRKYLRLLSFVWLYL LAKLLITLANFAFANKMNFDLLNETGVPWYLLSLASFYLITIFLQRVQPKIMLPIIIVIG CASGYLPVEGFLSLGRTLGFFPFFYCGYLMDIQKLQTFLDHRKVKWAAVGVILSSFLFVN SQWSLATKFWGFLTGWASYAEISPAFEYSSFIQLFFYVAAALVSLSWFALLPKRKLPLSA LGKDTLYPYLLHMPLIILLESGLQLDTLFKEWFTFRILALFFLALFILAITNMPVVKRGA DYLFNPIAYVLPKQWLKVK >gi|307679319|gb|GL456408.1| GENE 60 51366 - 52319 1034 317 aa, chain + ## HITS:1 COG:lin1460 KEGG:ns NR:ns ## COG: lin1460 COG1125 # Protein_GI_number: 16800528 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, ATPase components # Organism: Listeria innocua # 1 317 1 325 327 306 50.0 3e-83 MIKFQNVSKVYQENAVLSDVNLTIQQGEFFVLVGPSGSGKTTTLKMINRLIEPTTGEVAL NEQAVTNYPLRELRLKIGYVLQQIALFPNLTVAENIELIPEMKKWPKEQRRERTIELLKK VQLDPEEYLHRKPAALSGGEQQRIGILRAIAAEPEVILMDEPFSALDPISRHHLQRLVKE LHQELASTIVFVTHDMNEALLLGERICIMDAGKIIQVDTPEAIQKHPKNNFVGQFFKQSS PELANYCGADLTAFLEATDETIEPVPTVFMETNLKEIVQLINAQEKANLVEKQQVLGCIT SKTITRFMEQLLESEGQ >gi|307679319|gb|GL456408.1| GENE 61 52320 - 53837 1627 505 aa, chain + ## HITS:1 COG:SP1860_2 KEGG:ns NR:ns ## COG: SP1860_2 COG1732 # Protein_GI_number: 15901688 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) # Organism: Streptococcus pneumoniae TIGR4 # 212 505 5 298 299 338 58.0 1e-92 MQALIETFFARKEEYLQALIEHMQLSFISLLFAALIAIPLAIYLTSHRKLAESLLQVTGI FQTIPSLALLGLLIPLIGIGRPPAIVALVIYALFPILQNTYTGLTEIDPSLEEAAEAFGM SKKEKLFKFELQMALPFIISGIRTATVLIIGTATLAALIGAGGLGTFILLGIDRNNLSLI FIGALSSAALAVLFNYGIHWLEKANGRRLIIGGTILGLLLGGSFFWNQQTSSKEKQLTIA GKLGAEPDIIINMYKALIEENSDIQVTLKPNFGKTTFLYNALKSDEIDLYPEFTGTVIET FLKNPPQLDNQPQVVYEAARAGLKNQENLTLLKPMRYENTYAVAVKRSFAKAHQLKTISD LQKISNQLKAGFTLEFIDRQDGYKGLQEKYHLNLNVQSMEPALRYQAINNGEVNVIDAYS TDSELKQYDLVTLEDDQALFPPYQGAPLIKTATLEKYPELAEILNKLAGKISEEEMSEMN YQVNVEGQDPSIVAKDYLKEKNLLK >gi|307679319|gb|GL456408.1| GENE 62 53979 - 54434 689 151 aa, chain + ## HITS:1 COG:lin1404 KEGG:ns NR:ns ## COG: lin1404 COG1438 # Protein_GI_number: 16800472 # Func_class: K Transcription # Function: Arginine repressor # Organism: Listeria innocua # 1 150 1 149 149 107 38.0 9e-24 MKKAERQRLIKQLIMQQEIETQDELITRLEELGVRATQATVSRDIREMSIVKTHGADGRV KYAIFSQAQGTSSEEKLRESVKDSVVRMERVQFIVILHTEMGNADVVSNFLDEVAYPEVA GTVAGADTIIVITRSEEDAEHFIERIENMIF >gi|307679319|gb|GL456408.1| GENE 63 54468 - 55976 1471 502 aa, chain + ## HITS:1 COG:lin1985 KEGG:ns NR:ns ## COG: lin1985 COG1109 # Protein_GI_number: 16801051 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Listeria innocua # 4 489 9 495 503 545 57.0 1e-154 MVELKALQNGSDIRGIALDTEEQTATLTATAVAEIAVGVVRWLQDKKQLPRKAQQRLTIA IGHDSRLTAEPIKQALVDTFLSLGIQVIDVGLATTPAMFMATQFPTFQCDAAIMITASHL PYYFNGLKFFTAEGGAEKEDIRYILSHTDPLTANENGTLMKQELLPIYAEHLVEKIRQGI HSPEEKPLQGFRIIVDAGNGAGGFFAEQVLQVLGADTTGSQFLEPDGHFPNHVPNPDNSE AMKSIQTAVLANQADLGIIFDTDVDRSAVVDQSGEVLNRNNLIAVLAAIVLKEAPGSYIV TNSPTSSHLKTFIEEKGGQQIRYISGYRNVINKMIELNHGGFQTPLAIETSGHAAFQENY NLDDGAYIVAKILMLLPELKQNNQTLGDLIATLKQPAETNEFRFKITAEDVTCYGQQVLR DFELFVENQADFAVDRENQEGVRGNVSGQYGSGWFLLRLSLHEPLLVLQVENDQSDKNAC VIEKIATFLQKYEEIDSQQIEK >gi|307679319|gb|GL456408.1| GENE 64 56000 - 56554 460 184 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116334854|ref|YP_796381.1| acetyltransferase [Lactobacillus brevis ATCC 367] # 1 176 1 176 177 181 50 7e-45 MENVLKGKHVGFSHFREEYIEHIAKQQWDNELLRHLSWDALHPWGLEEWKDFTINKGEDD RFLFAILENTTEEFIGWVSLSDVQLKNRGANLGIAILQKEQRGQGYGFEAVSLICKFAFY ELGLHKIRLAVNSNNQNAIHVYEKVGFKKEGIDREALFQDGQWLDIYNYGILQKEWLQMI KAES >gi|307679319|gb|GL456408.1| GENE 65 56678 - 57541 534 287 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 3 280 5 276 285 210 44 2e-53 MEYSMRLPENFSTMTVKELLENEWLVPRKVRHFLRTRKNVKINGETAAFHFPVQAGDCVT LTFEETDYVFPTIHLGEATRVKVLYEDEHLMIVNKPYGIKTHPNQPQETDTLLNHVAAYL AEKNQVPYVVHRLDKETSGAIVFAKNPFVLPILGRLLETKQIYRQYQAIVAGHFNQKEQT INQPIGRDRHDRRKRRIDPQKGDSAITHVQVVKALSNNQTAVTCVLETGRTHQIRVHLAS EGHPIIGDPLYNPKSQAARLMLHASQLHLLHPFTKKQIVVTAAPGLW >gi|307679319|gb|GL456408.1| GENE 66 57884 - 60070 2586 728 aa, chain + ## HITS:1 COG:SPy2059 KEGG:ns NR:ns ## COG: SPy2059 COG0744 # Protein_GI_number: 15675827 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Streptococcus pyogenes M1 GAS # 34 722 93 777 778 616 49.0 1e-176 MDNLKQFFSKVGVGLRHFWTWIKPYLIQFHQARKRIWKKYQINKIFLLIGLVVALGASIY LFYLAKSANVETLKSGLSESTRVYDESGEEVGKLFGQKGTFVELDNISPYIQDAVISTED RGFYQHKGYSIKGIARAVVGKLTFGKIGGGGGGSTITQQLAKNAYLTQEQTLDRKARELF LAIEIEKKYSKKDILAMYLNNSYFGNGVWGVQDAARKYFGVDASQVTVGEAATLAGMLKG PGIYNPIDYIDNATARRNTVLQLMVDNKKLSQEEANQEASVNLASLLNDTYVGDENSYKY PYYFDAVIDEAVNRYKFKEEDILNKGYKIYTSLNQKYQDAMDATYKNDTLFPPNAEDGAM VQSGSVAIDPKTGGVQALVGGRGEHVYRGFNFATQTKRSPGSSLKPISVYTPALEAGYKP DSVLEDKPQDYYPAQNYSRTYSGEVPMYQALGESLNLPAVWLLHQIGLDKGYEKTEKFGI PLSEKDRYYGLALGGLQTGVSPLTMAGAYSAFANEGYKTETHLITKIVDSTGAIVVDNTK VKKEQVITKDVADGITSMLLGVFSSGSGVNAQPAGYVMAGKTGTTETNFDSSKTNDQWVI GYTPEVVIATWLGFQETSKTHYLEGSSATYASQVFNSQASGILPQVKQAQFPVADAYATG GKVVDSNDSLTGGANSNWRDNLKDFGNSVQDGASNFGDTLNEVGGQIKDGAKKVKDKIEG IFGGLLGN >gi|307679319|gb|GL456408.1| GENE 67 60133 - 60474 583 113 aa, chain + ## HITS:1 COG:lin2326 KEGG:ns NR:ns ## COG: lin2326 COG3679 # Protein_GI_number: 16801390 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 3 112 4 113 117 87 50.0 5e-18 MSNIYDTANQIERELRELDEFKALQAAYEEVKADEAAYTLFKEFQGFQQGLQEKQMRGEE FTDEDAEKAQSIATKVQETAVINELMQKEQAFSLVVNDLNRIIMTPVRDMYND >gi|307679319|gb|GL456408.1| GENE 68 60630 - 61865 1307 411 aa, chain + ## HITS:1 COG:lin2325 KEGG:ns NR:ns ## COG: lin2325 COG0420 # Protein_GI_number: 16801389 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Listeria innocua # 1 281 4 283 411 179 37.0 1e-44 MKLLHTADLHMDRSFEGLTGIPTALAKRLREANQQLLMNIVTVAIRETVDLVIFAGDTFH QSQTSISMQAQLMAALEQLKQAEIPVILTFGNHDYYKKDRYWFSFPDNVFLFEKEMVETL YFETKAGEQVAVSGFSYEHPWIDENKALEFPIKQAESDIHIGIYHGDTSRKAQQNYAPFT WKDLKATGYNYWALGHIHQPQIVSEQPLIVYPGTPQGHTKKEQSLQGVAVVTLSQNQATV QFEKVAEIDWTNEEVSLAQCRDTQSVLSYLETSLLTKWHAHQQQQLMALTLKETQHLDVT VVQAIVNGELLSYLQQQLLQKTQGDFFVYHLILQAEEPTKEPIYLAASPNLLTALEKTYL DPVIFEDTTKELLRYPEFAGIFSMDEQWRLESLRLAHEQINEDFTIQEDPL >gi|307679319|gb|GL456408.1| GENE 69 61862 - 64573 2886 903 aa, chain + ## HITS:1 COG:lin2324 KEGG:ns NR:ns ## COG: lin2324 COG4717 # Protein_GI_number: 16801388 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 895 1 908 908 218 25.0 6e-56 MKLLAVEIVGFGKWQQQKITFESGNQLLYGANEVGKSTLYQFIQAMLFGFPTKGKRKRDY APKNGGSYGGRLWLAHPVFGEVQVERFKEKNKGQAIIYYQQQMGDEKTLQQMLHPLTKKL FQEVFTFQQEQLITSDKLTEEELQTSLLAIGVSGSQQLLTYRNTYFKEAQKIFKGKGQQP LLNQKLAAYQELKEQIQEKEAQQQTFQQLEETIRETEQQRVTLQQQLKETQQDLLQVAEQ QRHFPLYEEWQSLPEETENVVLVKEDQVQLEETFQEYMYLDKERQRLTKELSLQSEALDV PEGYAFYLEQEALIQQLLNQRYDMQQLMTESEWMTQTFEQNRQEMVLLENEWSWSPERPP QLFYDNETVQKWRQQQVAYTQALQKGQEQKAFLASQIENLEDQLTDFEKAHAAFFGEATR AQKAQKTSQPLWLLLGSILALLGFFLPSPLKWGLVLVGVSLIAKEVLSYATRKEASSDEV KEEWKTKLSQLDYLNEQFQQALNQEREAQLQVEQLEQSVAEQAQLHQLGKMNQIDTLMNQ RELITRYLLLVQTNEELMSQLKENQQKRQGFEEQVFPLMTHLPLQGKSLSEKLHFLEGFA EEMEKVRFAQEYQADGYLKQQLRELKTKQQEALTRIQPLLIRYRILSIADVPMRIQQLTT QQAQVGRGQELATQLGNLFPEAVTEATLKDRSLQLAQQQALEESQLDKIQEQYQALIYEK QQLMTDGTLDELYQRQAILKAEIKELAQRWSGYQLAGQLLMDLLTELSEQQLPSLLQYAS SYFALLTNQRYQSIQVAEGQLVAVTKEQEMFYLHELSTGTKDQLMMAVRFAFLAVQGEQL ICPIIIDDGWLHYDHQRKAQLAELFTKFGQKQQVICFSSDQEMVSYYQDLQQRVIALEGG SVK >gi|307679319|gb|GL456408.1| GENE 70 64570 - 65514 1045 314 aa, chain + ## HITS:1 COG:SP1980 KEGG:ns NR:ns ## COG: SP1980 COG3481 # Protein_GI_number: 15901803 # Func_class: R General function prediction only # Function: Predicted HD-superfamily hydrolase # Organism: Streptococcus pneumoniae TIGR4 # 10 311 4 305 308 366 58.0 1e-101 MKKLRELTVEELFESFVLIKNADVRVAKNGKKFIAFTFQDTSGTIDGKYWDASEDEITRF TAGNVVLLNGKREVYQNKPQVKILHMRLATAEEPSQPSLYMERAPLKKEEMVEEINQVIF EITNAHWNRIVRYLMTKYQQEFYEFPAAKRNHHAFANGLAYHTVSMLRLGKAIAKEYPEI NTSLLYAGIILHDLGKVLELSGAITTEYTVAGNLIGHLVLVDEEITKACLALKIDDREED VVVLRHMVLAHHGLLEYGSPVRPRIMEAEILHQIDTMDASIQMMLGAIRQTQPGEYTERI FGLDNRSFYVPKDK >gi|307679319|gb|GL456408.1| GENE 71 65554 - 66582 1368 342 aa, chain - ## HITS:1 COG:SP0981 KEGG:ns NR:ns ## COG: SP0981 COG0760 # Protein_GI_number: 15900858 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Streptococcus pneumoniae TIGR4 # 1 297 1 299 313 166 41.0 5e-41 MKKKLILAAAGAMAVFSLAACSSGSKDIATMKGSTITVDDFYNQIKEQSTSQQAFSQMVI YKVFEEKYGDKVTDKDIQKNFDEAKEQVEAQGGKFSDALKQAGLTEKTFKKQLKQRAAYD AGLKAHLKITDEDLKTAWASFHPEVEAQIIQVASEDDAKAVKKEITDGGDFTKIAKEKST DAATKKDGGKIKFDSQATTIPAEVKEAAFKLKDGEVSEPIAATNMQTYQTTYYVVKMTKN KAKGNDMKPYEKEIKKIAEETKLADQTFVSKVISDELKAANVKIKDDAFKNALAGYMQTE SSSASSEKKESKSSDSKTSDTKTSDSEKATDSSSKTTESSSK Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:28:48 2011 Seq name: gi|307679318|gb|GL456409.1| Enterococcus faecalis TX0411 genomic scaffold Scfld22, whole genome shotgun sequence Length of sequence - 989 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 4 - 988 1053 ## COG0286 Type I restriction-modification system methyltransferase subunit Predicted protein(s) >gi|307679318|gb|GL456409.1| GENE 1 4 - 988 1053 328 aa, chain + ## HITS:1 COG:SPy1906 KEGG:ns NR:ns ## COG: SPy1906 COG0286 # Protein_GI_number: 15675719 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Streptococcus pyogenes M1 GAS # 1 328 23 347 526 339 53.0 6e-93 MDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSKQTMLYRELLSDEESKED LIATIVDILGYAISPEYLFNVLADQAKQAIFQLNDLNKAFVQLSSTYNQFNGLFDDVDLQ SKKLGTDEQQRNVTITEVIKKLNDVDVLGHDGDVIGDAYEFLISQFASEAGKKAGEFYTP HMVSDMMAQIVTLDQKERPFFSVFDPTMGSGSLMLNVRNYLTHPDNVKYHGQELNTTTYN LAKMNLILHGVDAEEMNIRNGDTLNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLDDSR FNRYGKLAPKSKADFAFLLHGFYHLKET Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:28:49 2011 Seq name: gi|307679317|gb|GL456410.1| Enterococcus faecalis TX0411 genomic scaffold Scfld23, whole genome shotgun sequence Length of sequence - 627 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 411 563 ## EF2975 hypothetical protein 2 1 Op 2 . - CDS 415 - 627 183 ## EF0838 pyridoxal phosphate-dependent enzyme, putative Predicted protein(s) >gi|307679317|gb|GL456410.1| GENE 1 3 - 411 563 136 aa, chain - ## HITS:1 COG:no KEGG:EF2975 NR:ns ## KEGG: EF2975 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 136 1 136 247 260 100.0 1e-68 MSLKPNYLEERICLNVLANSVENAQACYEAAEGHVVLGVLSKNYETDEAAIDDMKKYQAA TNNALSVGLGAGDPNQSQMVARLSEVLQPQHVNQVFTGVGASRALLRQDETVINGLVSPT GKVGYVNIATGPLSSG >gi|307679317|gb|GL456410.1| GENE 2 415 - 627 183 70 aa, chain - ## HITS:1 COG:no KEGG:EF0838 NR:ns ## KEGG: EF0838 # Name: not_defined # Def: pyridoxal phosphate-dependent enzyme, putative # Organism: E.faecalis # Pathway: Selenocompound metabolism [PATH:efa00450]; Aminoacyl-tRNA biosynthesis [PATH:efa00970] # 2 70 300 368 368 124 98.0 1e-27 GDIYRASVKVDGRKTAKEVIQALKAESPAIYTREYQANNGIIEFDIRSVNQEEMNKIVQR LQEIMDTKEK Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:29:00 2011 Seq name: gi|307679316|gb|GL456411.1| Enterococcus faecalis TX0411 genomic scaffold Scfld29, whole genome shotgun sequence Length of sequence - 22082 bp Number of predicted genes - 20, with homology - 20 Number of transcription units - 9, operones - 3 average op.length - 4.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 468 - 527 8.1 1 1 Op 1 . + CDS 597 - 1397 1110 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 2 1 Op 2 . + CDS 1413 - 3275 1689 ## COG3711 Transcriptional antiterminator 3 1 Op 3 . + CDS 3272 - 3757 504 ## EF3308 transcriptional regulator SrlR 4 1 Op 4 6/0.000 + CDS 3757 - 4311 686 ## COG3730 Phosphotransferase system sorbitol-specific component IIC 5 1 Op 5 6/0.000 + CDS 4328 - 5323 1090 ## COG3732 Phosphotransferase system sorbitol-specific component IIBC 6 1 Op 6 . + CDS 5347 - 5703 481 ## COG3731 Phosphotransferase system sorbitol-specific component IIA 7 1 Op 7 . + CDS 5731 - 6408 886 ## COG0176 Transaldolase + Term 6412 - 6461 12.1 + Prom 6508 - 6567 6.1 8 2 Tu 1 . + CDS 6609 - 8381 1838 ## COG4716 Myosin-crossreactive antigen + Term 8383 - 8428 9.4 + Prom 8708 - 8767 3.2 9 3 Tu 1 . + CDS 8792 - 9778 836 ## EF3301 hypothetical protein + Term 9781 - 9825 12.1 + Prom 9864 - 9923 4.7 10 4 Op 1 15/0.000 + CDS 10026 - 10742 826 ## COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division 11 4 Op 2 25/0.000 + CDS 10758 - 11519 952 ## COG1192 ATPases involved in chromosome partitioning 12 4 Op 3 1/0.000 + CDS 11512 - 12402 1079 ## COG1475 Predicted transcriptional regulators + Prom 12420 - 12479 6.0 13 4 Op 4 4/0.000 + CDS 12520 - 12705 194 ## COG4481 Uncharacterized protein conserved in bacteria 14 4 Op 5 . + CDS 12762 - 13877 1649 ## COG0012 Predicted GTPase, probable translation factor + Term 13906 - 13931 -0.8 15 5 Tu 1 . + CDS 13986 - 14675 838 ## COG4858 Uncharacterized membrane-bound protein conserved in bacteria + Term 14735 - 14764 -0.3 16 6 Tu 1 . + CDS 14841 - 16523 1292 ## EF3294 hypothetical protein + Term 16553 - 16599 5.9 + Prom 16593 - 16652 8.6 17 7 Tu 1 . + CDS 16681 - 18162 2127 ## COG0516 IMP dehydrogenase/GMP reductase + Term 18193 - 18233 5.1 - Term 18277 - 18321 8.5 18 8 Tu 1 . - CDS 18331 - 19602 1649 ## COG0172 Seryl-tRNA synthetase - Prom 19628 - 19687 5.4 - Term 19653 - 19705 12.1 19 9 Op 1 40/0.000 - CDS 19937 - 21118 1171 ## COG0642 Signal transduction histidine kinase 20 9 Op 2 . - CDS 21108 - 21797 863 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 21831 - 21890 11.2 Predicted protein(s) >gi|307679316|gb|GL456411.1| GENE 1 597 - 1397 1110 266 aa, chain + ## HITS:1 COG:Z5618 KEGG:ns NR:ns ## COG: Z5618 COG1028 # Protein_GI_number: 15804613 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Escherichia coli O157:H7 EDL933 # 1 266 1 268 268 323 61.0 3e-88 MTDWLGIKGKVVIVTGGSSGIGRSIVESLLAQEVYVANFDISASETQHEHLLFVKVDVTS RAEVEAGVAQVVEKFGTVDGLVNNAGINIPRLLVDKNHPHGPYELSDEVFDKIVAINQKG LYLMSQAVGRILVQKQAGVIINMSSEAGLEGSEGQSAYAATKAAVSSYTRSWAKELGKSN VRVVGIAPGIMEETGLRTLAYEEALAYTRNISVEQLRAGYSKTSTIPLGRSGKLHEVADL VCYYLSDRSSYITGITTNVAGGKTRG >gi|307679316|gb|GL456411.1| GENE 2 1413 - 3275 1689 620 aa, chain + ## HITS:1 COG:BS_licR_1 KEGG:ns NR:ns ## COG: BS_licR_1 COG3711 # Protein_GI_number: 16080911 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus subtilis # 28 456 28 481 499 95 20.0 3e-19 MTLVNRWYQVIKLLVDHKGMSLQELQEKLAASPQTVRKNIDTLNDELIGIAQIIQKENLF QLEINNFEGFEEVLSGRLKRESDFNSSSKRVSYIIKRLIEEDQFISTYDLSEELAVSRGT VNKDIKRMKELIAPWQVAVVGTPNRGIHLEGKEFDLRLLHVNYVQEYFEEQFLHETTKQM IQKIIKETRLAKQDSFLLRRVVSIVLQRVLAGKLITELPPEYVDYVRHNEQIEELMYHLE ITYNVTLSQWERSFISFPFNINTNHIRNSLLADEGLLADYFQKMMKKIHHSVVVEFDEDF LFSEMKDHLRNVMNRLVFHVECHDLFYGEIERQYPLAYELAKIGLQELGRLLNRCVPTVE FGYLALYFELALRGNYEAGAKKEIAVICSTGHGTALIIQRQLEKVLGPDVQIAHFSEEEA ERRELNQYFAIFTTIPLKNIRPQTPMIHLTNLFNDTWLRNEWQRAKEIRSVESQNIHMTY QLLENTQGYRANIQKMIADLEAEKLVDPQFIERIFTREDQQTTIFESGIAFPHTINQALP TIILSIGVFEESLVTPEGKVDVILLLGIPEELTATVEAELLQLYDRLFTIAGDERLRNEL RKQRDVLAVKEWMQRKGIII >gi|307679316|gb|GL456411.1| GENE 3 3272 - 3757 504 161 aa, chain + ## HITS:1 COG:no KEGG:EF3308 NR:ns ## KEGG: EF3308 # Name: srlR # Def: transcriptional regulator SrlR # Organism: E.faecalis # Pathway: not_defined # 1 161 1 161 161 302 100.0 4e-81 MSFIYVFGALFLTAYFVQIAMGMKQIKHFNQNYQELRQLGKVAIGRRAGKLKAGTIILFA VDSQGKILAARKMQGVTVLAKFHPLPQYVNEDIHYMDHYHPLVQKENKLTQQAMENAREI YLRVELGNYQETQPLTPLNGAKIQWQLWKNKVQTKLKGSVE >gi|307679316|gb|GL456411.1| GENE 4 3757 - 4311 686 184 aa, chain + ## HITS:1 COG:PM1971 KEGG:ns NR:ns ## COG: PM1971 COG3730 # Protein_GI_number: 15603836 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIC # Organism: Pasteurella multocida # 1 182 2 183 184 206 54.0 2e-53 MSYITKFAEGFMHLFQTGAETFISWMTGIVPVVLMLMVAMNTLIAFLGEERVTKVAKLSA KNPVTRYLVLPFLSAFMLGNPMSFTMARFLPEYYKPSYYAAQAQFCHTSNGVFPHINPGE LFVWLGIAQGIDTLGLNSMDLAIRYMFVGILMNFIGGWVTDFTTAYVCKQQGITLSKTVE IAVD >gi|307679316|gb|GL456411.1| GENE 5 4328 - 5323 1090 331 aa, chain + ## HITS:1 COG:PM1970 KEGG:ns NR:ns ## COG: PM1970 COG3732 # Protein_GI_number: 15603835 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIBC # Organism: Pasteurella multocida # 5 330 4 328 329 341 57.0 1e-93 MTYNSIKVVKGNGGYGGPLVITPTEEKHKFIYITGGGEKPAIVDKIVELTGMEAVNGFKT SIPDDEIALAIIDCGGTLRCGIYPKKGIPTINVVPTGKSGPLAQYINETIYVSAVGPKQI TLTSEEAAADTEKPTSKKTEFKYDTSKKITEQKAEQQSFVAKIGMGAGKVVATFNQSARE GVQTMINTVIPFMAFVSLLIGVIQGSGIGGFFANIMAPLAGNIVGLTIIGFICSLPFLSP LLGPGAVISQVIGTLIGVEIGKGNIPPQLALPALFGINTQNACDFIPVGLGLEEAEAETV EVGVPSVLYSRFLNGAPRVLVAWLASFGLYS >gi|307679316|gb|GL456411.1| GENE 6 5347 - 5703 481 118 aa, chain + ## HITS:1 COG:PM1969 KEGG:ns NR:ns ## COG: PM1969 COG3731 # Protein_GI_number: 15603834 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIA # Organism: Pasteurella multocida # 2 117 3 118 123 66 29.0 9e-12 MSVFTTKVQSIGPEAELFKEEKMVILFGKDAPDALADYCYNIEVQPVTEAITDKQTLVID EQTYQITAVGEVVLTNLDTLGHITIKFDGATTPELPGTLYVEEKAIPEITVGTTITIL >gi|307679316|gb|GL456411.1| GENE 7 5731 - 6408 886 225 aa, chain + ## HITS:1 COG:SPy2048 KEGG:ns NR:ns ## COG: SPy2048 COG0176 # Protein_GI_number: 15675818 # Func_class: G Carbohydrate transport and metabolism # Function: Transaldolase # Organism: Streptococcus pyogenes M1 GAS # 1 215 1 216 222 258 62.0 6e-69 MEFMLDTINLEAIRKYQKILPLAGVTSNPSIVKQAGKIDFFAQMKEIKKTIGQASLHVQV VGQTTEEMLEDAQTIVQQLGQETFIKIPVNEAGLAAIKQLKQANYRITATAIYTEFQGYL AIAAGADYLAPYYNRMENLTIDSQKVIEHLAAEIKRTNAKSKILAASFKNVAQINQSCQM GAQAVTIAPELVTQGLAMPAIQKAVTDFQEDWVAVFGVETVNELA >gi|307679316|gb|GL456411.1| GENE 8 6609 - 8381 1838 590 aa, chain + ## HITS:1 COG:L180241 KEGG:ns NR:ns ## COG: L180241 COG4716 # Protein_GI_number: 15672937 # Func_class: S Function unknown # Function: Myosin-crossreactive antigen # Organism: Lactococcus lactis # 1 590 1 587 587 935 73.0 0 MRYTNGNYEAFARPRKPKGVDDKSAYIVGGGLAGLATAVFLIRDGQMKGENIHIFEELTL SGGSLDGKFIPHDGFVTRGGREMENHFECLWDLFRSVPSLEVEDASVLDEFYRLDLDDPN SSNCRIIHNRGERVPDDGQFTLSKKAQKEIVDLFMTSEDQLIGKKIEDVFGEEFFESNFW IYWCSMFAFEKWHSAIEMRRYIMRFIHHIKGLPDFTALKFTKYNQYESLVKPLLSFLTNQ GVDFQYETTINDIQVDIKGATKVARRLLLTQAGKTKEIPLTENDLVFVTNGSITESSTQG DHHTPAPITHELGGSWNLWKNLAKQSPEFGHPEVFCENLPDESWFVSATITWENFDIEPY LSRLTHRKLRTGKIVTGGIITIKDSNWMMSFAMHRQPHFKEQNDQQSITWVYGLLSNKPG NYIKKPIEQCTGQEITQELLYHLGVPEGEIERISEESATTIPVYMPFITSYFMLREPGDR PLVVPNGSKNLAFIGNFADTERDTVFTTEYSVRTAMEAVYQLLEVERGVPEVFASAYDLR VLANSVYYLSDKKKLTEMDMPFVERKMVEHFVKKFEDTYIGDILRENHLI >gi|307679316|gb|GL456411.1| GENE 9 8792 - 9778 836 328 aa, chain + ## HITS:1 COG:no KEGG:EF3301 NR:ns ## KEGG: EF3301 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 328 1 328 328 639 99.0 0 MGRWQELQQAMSAGVEAAIDAGWDRQAVYGLVESAIKDTRFLPLEQAKTAVAELFSEVGE VGSSAYERLFCFSAYRPQEKLSLLLWQLGAVLDQHGMLQLVGPYRFSKTVAPHATFWDLL AKTVQKAYPLGLLGSFNQEKAKKIHQLRMYIDRQNITYIRDFFKQEGDTDEQALKRYVFA AKPQGMGGRKLKKSSARLHNKYPEGASYSLINKKRLTPNFHSEFILNEEGTFVTQWDVLV EDWRGRLISNPAYYQAAKNNEYQEKVLNGESFNYANRNNRTHELLDSSPPGRFDHQLRKT AKKGWLSPRIQEYDYRRERQIKCDDYSK >gi|307679316|gb|GL456411.1| GENE 10 10026 - 10742 826 238 aa, chain + ## HITS:1 COG:lin2934 KEGG:ns NR:ns ## COG: lin2934 COG0357 # Protein_GI_number: 16801993 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division # Organism: Listeria innocua # 1 238 1 238 238 306 63.0 3e-83 MLPEEFRQLLAAKGIELTDQQMTQFDQYFHLLVEWNEKMNLTAITEEKEVYLKHFYDSVS LAFFEDFASDKAICDVGAGAGFPSIPLKIVFPSLNVTIVDSLNKRITFLTELVNQLGLAN VSLYHDRAETFGQKAEFRGAFDYVTARAVARLNVLSELCLPLVKKEGYFLALKASKSEEE INEAKPAIATLGGQFQKEVGFTLPITADERHIVVIQKKKETPKKYPRKPGLPNKQPIK >gi|307679316|gb|GL456411.1| GENE 11 10758 - 11519 952 253 aa, chain + ## HITS:1 COG:BH4058 KEGG:ns NR:ns ## COG: BH4058 COG1192 # Protein_GI_number: 15616620 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Bacillus halodurans # 1 252 1 252 253 356 70.0 2e-98 MTRIISVANQKGGVGKTTTTVNLGACLANLGKKVLLIDIDAQGNATSGMGVPKPDVAHDV YDVLVNEEPITSVVQHTSRENLDIVPATIQLAGAEIELTSMMARESRLKLAIDEVRDMYD FVLIDCPPSLGHLTINAFTASDSILIPVQCEYYALEGLSQLLNTIRLVQKHFNPELKIEG VLLTMYDARTNLGAEVVEEVRKYFREKVYDTIIPRNVRLSEAPSHGLPIIDYDIRSKGAE VYQALAKEVLENE >gi|307679316|gb|GL456411.1| GENE 12 11512 - 12402 1079 296 aa, chain + ## HITS:1 COG:lin2922 KEGG:ns NR:ns ## COG: lin2922 COG1475 # Protein_GI_number: 16801981 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 4 296 2 283 283 281 55.0 7e-76 MNKGKGLGRGIDALFQDIAKLEDVDVKNEQVTEILLNELRPNPYQPRKTFDETSLQELAN SILHSGVFQPIIVRKSAVKGYEIIAGERRFRASKLAGKEKIPAIIREFDEESMMQVAVLE NLQREDLNPLEEAEAYEMLMKNLKLTQAEVAERLGKSRPYIANYLRLLTLPDAVKAMVQK QSMSMGQARTLLGLKNKEQLLPLANRCIKDNLTVRQLEQLVAELNETQGKKGKKAKKAIK EKPIYIRESEDRLMDKFGTTVAIQEKEGKGKIEIEYLSSSDLARILDILDIHFDEE >gi|307679316|gb|GL456411.1| GENE 13 12520 - 12705 194 61 aa, chain + ## HITS:1 COG:BH4052 KEGG:ns NR:ns ## COG: BH4052 COG4481 # Protein_GI_number: 15616614 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 2 61 5 64 65 82 61.0 1e-16 MYDLGDIVEMKKPHACQANRWQIIRMGADIKIKCTNCGHIVMMPRRDFTKKLKKVIEKKA D >gi|307679316|gb|GL456411.1| GENE 14 12762 - 13877 1649 371 aa, chain + ## HITS:1 COG:SPy0006 KEGG:ns NR:ns ## COG: SPy0006 COG0012 # Protein_GI_number: 15674254 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted GTPase, probable translation factor # Organism: Streptococcus pyogenes M1 GAS # 1 371 1 371 371 552 78.0 1e-157 MALTAGIVGLPNVGKSTLFNAITKAGAEAANYPFATIDPNVGMVEVPDARLQRLTELVKP KKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDENIMREQNRDA DFVDPLADIDTINLELILADLDSINKRYTRVAKMAKAKDKEAVEELAVLDKIKPVLEEGL SARTIEFTPEEEKIVKSLFLLTTKPVLYVANVSEDEVADPDNNEYVQQVRNFATSENAEV IVVSARAEEEIAELDSEEDKAEFLEAMGIEQSGLDQLIRAAYDLLGLATYFTAGEQEVRA WTFRKGIKAPQAAGIIHSDFERGFIRAETVSYEDLDKYGNMQAAKEAGRVRLEGKDYVVQ DGDVMLFRFNV >gi|307679316|gb|GL456411.1| GENE 15 13986 - 14675 838 229 aa, chain + ## HITS:1 COG:SPy1828 KEGG:ns NR:ns ## COG: SPy1828 COG4858 # Protein_GI_number: 15675655 # Func_class: S Function unknown # Function: Uncharacterized membrane-bound protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 18 224 4 212 218 129 33.0 4e-30 MEAEALRAIVAENRQLEQNLTKRNEQYIFDLKKSLKAANLSEEELALALHGILPELIAGQ KTGKTARQLFGTVSERTEAILNKPAEVKEPAGWMIWLDNTLLLLGLLTIMLAAMSLFSKG TAQPLGLTTYILGAMAGGYVFYLMHKYVYRFDRQGGDKSKRPGWLKTTAILFGGMFLWIA VFAGSAMLPPVINPILDPMIALVIGALAFVARYFFKKKYNIQGSFMTRQ >gi|307679316|gb|GL456411.1| GENE 16 14841 - 16523 1292 560 aa, chain + ## HITS:1 COG:no KEGG:EF3294 NR:ns ## KEGG: EF3294 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 560 1 560 560 922 97.0 0 MGQQVKSWCRQHERLLIFISFLLLSGLSLYFVYFQENFLRASDFRFHQNRVEGLASAIKN NDWFPKINYFFLGGYGYASSLFYPDAYLYLPALLRVLGLSFVASMAIFVFAVNLATFSLT YYAGRLMALSKKRSYLFAILYGLSIYRMQDLFNRQALGEFLALSFFPLVLASLFLLRKGT TKYWPLLTLAMTGIGLAHFISIEMVSIWIGLYILFYWQQFFKKEVLWALAKAAGLTLLWL AFYLLPVAEQMKNQVFKVTSNPLTYISERSYPIVSLFINSLKSSVFHAKTANLGTLLFVG LVVAVVSLASKKIQDKRFIGLTLVLLLMVTTLFPWHLLNHTPLNTIQFPWRFLGILSVML AFFIAQDEWGVFRKSWTVALLVFLAISNLGIYQYQSIQSQQGRLLTKAEYEQPTPFYIGA GHEYLPDEINYQELLKQKKRQLDYSAEQVTITNVRMPYGKISFDYQVVKQSAKVTVPFIY YLGYQATIQMKNQTGAKKMSLTNQGGLAALSLSGTGHVDIRYQRTKVQKTGTMMTLLSVG GFGFSRFLQQKKKHKIKEQR >gi|307679316|gb|GL456411.1| GENE 17 16681 - 18162 2127 493 aa, chain + ## HITS:1 COG:L21264_3 KEGG:ns NR:ns ## COG: L21264_3 COG0516 # Protein_GI_number: 15672202 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Lactococcus lactis # 209 493 1 285 285 464 84.0 1e-130 MSNWETKFAKKGLTFDDVLLIPAESHVLPNDVDMSVQLAKNIKLNIPLMSASMDTVTDSN MAIAMARQGGLGVVHKNMTVAQQADEVRKVKRSESGVIIDPFFLTPTNLVADAEELMSRY RISGVPIVETMENRKLVGIITNRDMRFVTDYQIKIEEVMTKDHLVTAPVGTSLKDAEKIL QKHKIEKLPIVDEAGRLSGLITIKDIEKVIEFPNAAKDEHGRLLVAAAVGVTSDTFERAE ALLEAGADAIVIDTAHGHSAGVIRKIKEIRETFPEATLIAGNVATAEATKALYDVGVDVV KVGIGPGSICTTRVVAGVGVPQLTAIYDAASVAREYGKAIIADGGIKYSGDIVKALAAGG HAVMLGSMLAGTDESPGEFEIYQGRRFKTYRGMGSLGAMEKGSSDRYFQGSVNEANKLVP EGIEGRVAYKGSVSDIVFQLIGGLKSGMGYVGAADLKALREEAQFVQMSGNGLKESHPHD VQITKEAPNYSVQ >gi|307679316|gb|GL456411.1| GENE 18 18331 - 19602 1649 423 aa, chain - ## HITS:1 COG:SP0411 KEGG:ns NR:ns ## COG: SP0411 COG0172 # Protein_GI_number: 15900330 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 423 1 423 424 612 73.0 1e-175 MLDVKMMRQNFDEVKAKLQTRGVKEEILVEFLRLDESRRDLLVKVEEMKKYRNDVSAEIA QLKRNKEDATAKIAEMKEVGGNIKALDAEINAIDEELRGITTTLPNLPDDSVPVGAGEEE NVEVRRWSEPRTFAFEPKPHWEVAENLGILDFERGAKVAGSRFVYYKGLGARLERALYNF MLDLHVYEHGYTEMITPYIVNDTAMFGTGQFPKFKEDVFQLQDTDLTLIPTAEVPLTNYY NNEILDGKDLPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFNKVEMVKFSDAEHSYEELE KMTNNAEEILQKLGLPYRVMALSTGDMGFSAAKTYDLEVWIPAQETYREISSCSNCEDFQ ARRAMIRYRDENDKVQYAHTLNGSGLAVGRTVAAILENYQNEDGSVTVPEVLVPYMGNLT VIK >gi|307679316|gb|GL456411.1| GENE 19 19937 - 21118 1171 393 aa, chain - ## HITS:1 COG:lin2515 KEGG:ns NR:ns ## COG: lin2515 COG0642 # Protein_GI_number: 16801577 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 76 384 76 379 380 187 36.0 2e-47 MLVKPKKIEKQKRITLTSKEISELLAEAIVTIVLLLLLNVSIMFLLGQLLSENSPLAGVI WATKDAVAKELNTDLFWSWNKFVLPIFFLVDAAVLYWRLIRRYHQMQLRHIISELHYIAD GNYNHRIPFELSGDLAKVVTSINGLVDSTVAAIEDERRIEKSKDELITNVSHDIRTPLTS IIGYLGLIEDRQFHSQEDLLKYTHTAYVKAKQMKLLVDDLFEYTKVRQPSVPIHTTTFDM AQLIEQLAADFELEAKKINMQIQVKANPASLMMEGDTEKLVRVFNNLLSNALKYGKGGHH IVMEVDKVGTEAIIAVRNDGPAIPKHSLDQLFDRFYRVEESRSQETGGTGLGLAIAQSIV ALHGGYIYAKSDQKWTSFIIHLPLQRTNKKSES >gi|307679316|gb|GL456411.1| GENE 20 21108 - 21797 863 229 aa, chain - ## HITS:1 COG:lin2516 KEGG:ns NR:ns ## COG: lin2516 COG0745 # Protein_GI_number: 16801578 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 3 227 5 230 231 229 53.0 4e-60 MKILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMDG MEVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRSQ MQLTKEEPDELEVGPLMINKDSHEVKTIEGKEIQLTALEFGILYLLASHPNRVFSADEIF ERVWQQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKIDAR Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:29:48 2011 Seq name: gi|307679315|gb|GL456412.1| Enterococcus faecalis TX0411 genomic scaffold Scfld31, whole genome shotgun sequence Length of sequence - 113004 bp Number of predicted genes - 113, with homology - 107 Number of transcription units - 46, operones - 24 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 294 - 332 -0.0 1 1 Op 1 40/0.000 - CDS 513 - 2021 1330 ## COG0642 Signal transduction histidine kinase 2 1 Op 2 2/0.000 - CDS 2032 - 2718 917 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 2777 - 2836 3.4 - Term 2822 - 2865 9.2 3 1 Op 3 . - CDS 2876 - 4297 1921 ## COG0362 6-phosphogluconate dehydrogenase - Prom 4353 - 4412 7.5 - Term 4427 - 4477 12.2 4 2 Op 1 20/0.000 - CDS 4502 - 4681 322 ## PROTEIN SUPPORTED gi|29375627|ref|NP_814781.1| 50S ribosomal protein L32 5 2 Op 2 . - CDS 4738 - 5307 646 ## COG1399 Predicted metal-binding, possibly nucleic acid-binding protein - Prom 5328 - 5387 8.2 - Term 5584 - 5629 8.3 6 3 Op 1 12/0.000 - CDS 5681 - 7438 2447 ## COG0469 Pyruvate kinase 7 3 Op 2 3/0.000 - CDS 7503 - 8465 1394 ## COG0205 6-phosphofructokinase - Prom 8548 - 8607 6.7 8 3 Op 3 . - CDS 8638 - 11967 2873 ## COG0587 DNA polymerase III, alpha subunit - Prom 12166 - 12225 4.8 9 4 Tu 1 . + CDS 12085 - 12270 283 ## EF1043 hypothetical protein + Term 12271 - 12322 10.5 - Term 12258 - 12313 3.1 10 5 Tu 1 . - CDS 12325 - 13521 958 ## COG0477 Permeases of the major facilitator superfamily - Prom 13548 - 13607 7.5 - Term 13593 - 13642 14.0 11 6 Op 1 . - CDS 13731 - 15137 1501 ## COG2252 Permeases - Prom 15181 - 15240 9.7 12 6 Op 2 . - CDS 15289 - 15918 457 ## COG4330 Predicted membrane protein - Prom 15947 - 16006 3.1 + Prom 15923 - 15982 8.1 13 7 Tu 1 . + CDS 16070 - 16873 1020 ## COG0561 Predicted hydrolases of the HAD superfamily - Term 16965 - 17003 9.0 14 8 Tu 1 . - CDS 17015 - 18100 1043 ## EF1038 putative lipoprotein - Prom 18151 - 18210 3.4 - Term 18193 - 18237 9.1 15 9 Tu 1 . - CDS 18243 - 19853 1638 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase - Prom 19939 - 19998 9.8 - Term 19950 - 20007 13.5 16 10 Tu 1 . - CDS 20013 - 20414 589 ## COG0105 Nucleoside diphosphate kinase - Prom 20460 - 20519 3.4 17 11 Op 1 . - CDS 20533 - 21186 734 ## EF1035 putative lipoprotein 18 11 Op 2 . - CDS 21229 - 22158 784 ## COG3173 Predicted aminoglycoside phosphotransferase - Prom 22182 - 22241 6.6 - Term 22192 - 22244 15.0 19 12 Tu 1 . - CDS 22253 - 24568 2590 ## COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases - Prom 24700 - 24759 6.5 + Prom 24651 - 24710 7.3 20 13 Tu 1 . + CDS 24730 - 26967 1630 ## COG0178 Excinuclease ATPase subunit + Term 27023 - 27073 15.1 - Term 26923 - 26977 -0.6 21 14 Op 1 . - CDS 27071 - 27727 491 ## COG0775 Nucleoside phosphorylase 22 14 Op 2 . - CDS 27744 - 28799 1015 ## EF1030 endonuclease/exonuclease/phosphatase family protein 23 14 Op 3 . - CDS 28822 - 29406 621 ## EF1029 hypothetical protein - Prom 29550 - 29609 6.1 + Prom 29487 - 29546 8.0 24 15 Op 1 . + CDS 29583 - 30317 553 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 25 15 Op 2 . + CDS 30314 - 32845 2108 ## COG2898 Uncharacterized conserved protein + Term 32866 - 32931 24.3 - Term 32860 - 32912 11.0 26 16 Op 1 4/0.000 - CDS 32916 - 33728 1002 ## COG1806 Uncharacterized protein conserved in bacteria 27 16 Op 2 . - CDS 33741 - 34370 821 ## COG0517 FOG: CBS domain - Prom 34410 - 34469 10.8 + Prom 34445 - 34504 7.2 28 17 Tu 1 . + CDS 34540 - 37185 2585 ## COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase + Term 37228 - 37282 18.5 - Term 37214 - 37268 17.1 29 18 Tu 1 . - CDS 37299 - 37631 556 ## PROTEIN SUPPORTED gi|29375603|ref|NP_814757.1| hypothetical protein EF1023 - Prom 37743 - 37802 7.0 - TRNA 37665 - 37738 75.1 # Arg CCT 0 0 - Term 37773 - 37830 17.0 30 19 Op 1 . - CDS 37857 - 37976 178 ## - Prom 37998 - 38057 6.2 31 19 Op 2 . - CDS 38059 - 39252 1377 ## COG4552 Predicted acetyltransferase involved in intracellular survival and related acetyltransferases 32 19 Op 3 8/0.000 - CDS 39310 - 40704 1707 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase - Prom 40724 - 40783 3.1 - Term 40726 - 40781 10.5 33 20 Op 1 13/0.000 - CDS 40788 - 42065 1529 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 34 20 Op 2 8/0.000 - CDS 42131 - 42451 465 ## COG1447 Phosphotransferase system cellobiose-specific component IIA 35 20 Op 3 . - CDS 42474 - 42800 501 ## COG1440 Phosphotransferase system cellobiose-specific component IIB - Prom 42934 - 42993 7.0 - Term 43039 - 43072 -0.2 36 21 Op 1 . - CDS 43075 - 43485 454 ## EF1016 hypothetical protein 37 21 Op 2 . - CDS 43485 - 43679 212 ## EF1015 hypothetical protein 38 21 Op 3 . - CDS 43699 - 43917 387 ## EF1014 hypothetical protein 39 21 Op 4 10/0.000 - CDS 43961 - 45424 1691 ## COG1455 Phosphotransferase system cellobiose-specific component IIC - Prom 45447 - 45506 6.3 40 21 Op 5 1/0.000 - CDS 45566 - 45883 513 ## COG1440 Phosphotransferase system cellobiose-specific component IIB - Prom 46000 - 46059 5.5 - Term 46050 - 46099 5.4 41 22 Op 1 1/0.000 - CDS 46112 - 48817 2997 ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain 42 22 Op 2 1/0.000 - CDS 48862 - 50163 1320 ## COG0513 Superfamily II DNA and RNA helicases 43 22 Op 3 . - CDS 50190 - 51188 1277 ## COG0673 Predicted dehydrogenases and related proteins - Prom 51220 - 51279 6.0 - Term 51221 - 51255 -0.7 44 23 Tu 1 . - CDS 51294 - 52025 663 ## COG1489 DNA-binding protein, stimulates sugar fermentation - Prom 52066 - 52125 8.1 + Prom 52123 - 52182 4.0 45 24 Tu 1 . + CDS 52224 - 52592 320 ## EF1006 hypothetical protein + Term 52593 - 52652 13.3 + Prom 52678 - 52737 5.2 46 25 Op 1 . + CDS 52764 - 53432 867 ## COG1321 Mn-dependent transcriptional regulator 47 25 Op 2 . + CDS 53432 - 54955 1588 ## COG0364 Glucose-6-phosphate 1-dehydrogenase + Term 54960 - 55015 9.1 - Term 54948 - 55002 11.1 48 26 Tu 1 . - CDS 55007 - 57787 3282 ## COG0060 Isoleucyl-tRNA synthetase - Prom 57827 - 57886 4.8 - Term 57863 - 57905 9.0 49 27 Op 1 . - CDS 58098 - 58799 951 ## COG3599 Cell division initiation protein 50 27 Op 2 . - CDS 58851 - 58940 73 ## 51 27 Op 3 . - CDS 58951 - 59733 1342 ## PROTEIN SUPPORTED gi|29375583|ref|NP_814737.1| S4 domain-containing protein 52 27 Op 4 . - CDS 59760 - 59831 132 ## - Prom 59979 - 60038 3.3 - Term 59917 - 59951 -0.7 53 28 Op 1 14/0.000 - CDS 60046 - 60690 755 ## COG1799 Uncharacterized protein conserved in bacteria 54 28 Op 2 4/0.000 - CDS 60704 - 61381 687 ## COG0325 Predicted enzyme with a TIM-barrel fold 55 28 Op 3 35/0.000 - CDS 61398 - 62630 1636 ## COG0206 Cell division GTPase 56 28 Op 4 25/0.000 - CDS 62657 - 63979 1578 ## COG0849 Actin-like ATPase involved in cell division - Prom 64065 - 64124 5.7 - Term 64000 - 64037 0.1 57 28 Op 5 3/0.000 - CDS 64153 - 65277 1021 ## COG1589 Cell division septal protein 58 28 Op 6 4/0.000 - CDS 65286 - 66377 1115 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase 59 28 Op 7 28/0.000 - CDS 66382 - 67752 1387 ## COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase 60 28 Op 8 4/0.000 - CDS 67775 - 68740 1024 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 61 28 Op 9 . - CDS 68768 - 70996 2684 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 62 28 Op 10 . - CDS 70996 - 71403 506 ## EF0990 cell division protein 63 28 Op 11 29/0.000 - CDS 71420 - 72376 1081 ## COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis 64 28 Op 12 . - CDS 72391 - 72873 437 ## COG2001 Uncharacterized protein conserved in bacteria - Prom 72976 - 73035 6.4 - Term 73030 - 73056 1.0 65 29 Tu 1 . - CDS 73111 - 73482 119 ## EF0987 putative lipoprotein + Prom 73666 - 73725 7.5 66 30 Op 1 . + CDS 73757 - 74713 915 ## COG0598 Mg2+ and Co2+ transporters 67 30 Op 2 . + CDS 74781 - 74891 194 ## + Term 74928 - 74969 7.0 - Term 74907 - 74964 18.1 68 31 Op 1 8/0.000 - CDS 74982 - 76655 2172 ## COG0497 ATPase involved in DNA repair 69 31 Op 2 6/0.000 - CDS 76673 - 77122 513 ## COG1438 Arginine repressor - Prom 77171 - 77230 10.9 70 32 Op 1 3/0.000 - CDS 77261 - 78076 855 ## COG1189 Predicted rRNA methylase 71 32 Op 2 . - CDS 78090 - 78971 1130 ## COG0142 Geranylgeranyl pyrophosphate synthase 72 32 Op 3 . - CDS 78971 - 79201 475 ## EF0980 exodeoxyribonuclease VII, small subunit 73 32 Op 4 7/0.000 - CDS 79203 - 80549 1532 ## COG1570 Exonuclease VII, large subunit 74 32 Op 5 4/0.000 - CDS 80559 - 81404 1110 ## COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase - Prom 81442 - 81501 6.0 75 32 Op 6 10/0.000 - CDS 81508 - 81960 648 ## COG0781 Transcription termination factor 76 32 Op 7 . - CDS 81953 - 82384 728 ## COG1302 Uncharacterized protein conserved in bacteria - Prom 82488 - 82547 4.2 - Term 82661 - 82705 5.1 77 33 Op 1 1/0.000 - CDS 82717 - 83037 458 ## COG1694 Predicted pyrophosphatase 78 33 Op 2 . - CDS 83051 - 84115 1467 ## COG0006 Xaa-Pro aminopeptidase - Prom 84277 - 84336 7.2 + Prom 84063 - 84122 5.8 79 34 Tu 1 . + CDS 84287 - 85102 798 ## COG1408 Predicted phosphohydrolases + Term 85117 - 85170 4.2 - Term 85104 - 85157 7.2 80 35 Tu 1 . - CDS 85173 - 85586 443 ## COG3223 Predicted membrane protein + Prom 86010 - 86069 4.2 81 36 Tu 1 . + CDS 86189 - 86764 434 ## CLL_A1479 hypothetical protein + Term 86859 - 86894 1.1 - Term 86982 - 87028 11.3 82 37 Tu 1 . - CDS 87029 - 87514 448 ## EF_B0061 hypothetical protein - Prom 87535 - 87594 8.6 - TRNA 87635 - 87708 91.1 # Met CAT 0 0 - Term 87567 - 87637 5.8 83 38 Op 1 . - CDS 87729 - 88115 387 ## gi|307290069|ref|ZP_07569993.1| hypothetical protein HMPREF9509_00379 84 38 Op 2 . - CDS 88028 - 88726 347 ## LSL_1843 hypothetical protein 85 38 Op 3 . - CDS 88728 - 89114 267 ## LSL_1844 hypothetical protein - Prom 89341 - 89400 7.6 - Term 89372 - 89403 2.5 86 39 Op 1 . - CDS 89473 - 90774 1464 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) 87 39 Op 2 . - CDS 90771 - 91007 408 ## COG5546 Small integral membrane protein 88 39 Op 3 . - CDS 91000 - 91221 263 ## gi|281416274|ref|YP_003347623.1| hypothetical protein - Term 91234 - 91276 6.2 89 40 Op 1 . - CDS 91301 - 92323 1074 ## EF1481 hypothetical protein 90 40 Op 2 . - CDS 92335 - 92463 248 ## 91 40 Op 3 . - CDS 92483 - 94900 1811 ## llmg_0846 hypothetical protein 92 40 Op 4 . - CDS 94917 - 95282 221 ## LACR_2093 hypothetical protein 93 40 Op 5 . - CDS 95293 - 99828 3010 ## COG3953 SLT domain proteins 94 40 Op 6 . - CDS 99838 - 100197 274 ## LACR_2095 hypothetical protein 95 40 Op 7 . - CDS 100230 - 100640 516 ## LACR_2096 hypothetical protein - Term 100650 - 100683 5.1 96 41 Op 1 . - CDS 100697 - 101155 601 ## llmg_0841 major tail protein 97 41 Op 2 . - CDS 101175 - 101537 419 ## llmg_0840 hypothetical protein 98 41 Op 3 . - CDS 101534 - 102073 473 ## llmg_0839 hypothetical protein 99 41 Op 4 . - CDS 102073 - 102414 406 ## llmg_0838 hypothetical protein 100 41 Op 5 . - CDS 102395 - 102733 309 ## llmg_0837 hypothetical protein 101 41 Op 6 . - CDS 102747 - 103784 1326 ## CLD_2447 prophage LambdaCh01, coat protein 102 41 Op 7 . - CDS 103800 - 104450 696 ## LACR_2103 hypothetical protein - Prom 104676 - 104735 5.6 - Term 104630 - 104678 -0.6 103 42 Op 1 . - CDS 104737 - 104958 259 ## gi|307290089|ref|ZP_07570013.1| conserved domain protein 104 42 Op 2 . - CDS 104964 - 106112 511 ## COG5585 NAD+--asparagine ADP-ribosyltransferase 105 42 Op 3 . - CDS 106113 - 106424 194 ## PROTEIN SUPPORTED gi|116512786|ref|YP_811693.1| ribosomal protein 106 42 Op 4 . - CDS 106405 - 107832 1158 ## llmg_0826 portal protein 107 42 Op 5 2/0.000 - CDS 107846 - 109129 622 ## COG1783 Phage terminase large subunit 108 42 Op 6 . - CDS 109122 - 109916 701 ## COG5484 Uncharacterized conserved protein 109 42 Op 7 . - CDS 109969 - 110193 130 ## EF2021 hypothetical protein - Prom 110259 - 110318 7.2 - TRNA 110629 - 110702 58.4 # Lys TTT 0 0 + Prom 111049 - 111108 7.4 110 43 Tu 1 . + CDS 111223 - 111297 59 ## - Term 111243 - 111273 -0.9 111 44 Tu 1 . - CDS 111310 - 111573 333 ## gi|307290096|ref|ZP_07570020.1| hypothetical protein HMPREF9509_00407 - Prom 111670 - 111729 4.3 - Term 111803 - 111839 -1.0 112 45 Tu 1 . - CDS 111847 - 112263 296 ## EF2024 ArpU family transcriptional regulator - Prom 112408 - 112467 5.8 - Term 112553 - 112588 1.1 113 46 Tu 1 . - CDS 112686 - 112853 267 ## EF2829 hypothetical protein - Prom 112880 - 112939 2.8 Predicted protein(s) >gi|307679315|gb|GL456412.1| GENE 1 513 - 2021 1330 502 aa, chain - ## HITS:1 COG:L0130 KEGG:ns NR:ns ## COG: L0130 COG0642 # Protein_GI_number: 15673575 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Lactococcus lactis # 2 491 11 488 491 332 39.0 1e-90 MKRTIKKELEGPSLTIKWAFASSFFIFVVFTIFAVITYKSSVSLIVAKEKENVEATIAEV TNRLANANENLTVTDVFDYLKTPSERDENYYNKHTAVEGSFMEMDSFISELGQPELYLSV YDTNQKLVFKTQNEYDKLLQLDRQLPVVRTVFDKTGFYSVEPIFSKETREKIGYIQAFYE LSSFYEIRNHLLLTLVVLEVISLIVSSVLGFILSSYFLKPLKVLRDTMDTIRKDPQSDVH MPEINTRDELADISEIFNEMLDRMRRYIEQQEQFVEDVSHELRTPVAIMEGHLNLLNRWG KDDPEILDESLKASLQEISRMKSLVQEMLDLSRAEQVDTQYANERTDAKQVVYQVFNNFQ LVYPEFHITLDDDLPTEVELKIYRNHFEQLLIILLDNAIKYSTDRKEVHISISRTMNEFE IAVQDFGEGITEEDLEKIFDRFYRVDKARARNKGGNGLGLSIAKQLVENYKGRIDAESVL HQGTIFRIFIPIAGIKEESNVQ >gi|307679315|gb|GL456412.1| GENE 2 2032 - 2718 917 228 aa, chain - ## HITS:1 COG:lin1414 KEGG:ns NR:ns ## COG: lin1414 COG0745 # Protein_GI_number: 16800482 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 1 228 1 226 226 307 80.0 9e-84 MSNILIIEDEKNLARFVELELKHEGYTTEVHYNGRTGLEAALNNEWDAILLDLMLPELNG LEVCRRVRQVKNTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRID IEGDKNVAKQTTITYRDLTIEKENRVVRRNSEMIELTKREYELLLTLMENVNVVLARDVL LNKVWGYETEVETNVVDVYIRYLRNKIDVPGEESYIQTVRGTGYVMRS >gi|307679315|gb|GL456412.1| GENE 3 2876 - 4297 1921 473 aa, chain - ## HITS:1 COG:SP0375 KEGG:ns NR:ns ## COG: SP0375 COG0362 # Protein_GI_number: 15900298 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconate dehydrogenase # Organism: Streptococcus pneumoniae TIGR4 # 1 473 1 474 474 790 80.0 0 MTKQQFGVVGMAVMGKNLALNIESRGYTVALYNRTGSKTTEVVEEHPDKNFQATYSIEEF VNAIEKPRRIMLMVKAGPATDATIQELLPHLDKGDILIDGGNTFFKDTMRRNEELANSGI NFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILEKISAKAEDGEPCVTYIGPNGAGH YVKMVHNGIEYGDMQLIAESYDLMKQILGLSVDEMAEIFKEWNEGELDSYLIEITADILT RKDDEGTDQPIVDVILDAAGNKGTGKWTSQSALDLGVPLPLITESVFARFISAYKEERVK ASGILSKPAAFNFAGDKKELIEKIREALYFSKLMSYAQGFAQLRAASEEYGWDLPFGEIA KIWRAGCIIRAQFLQKITDAYEKNPALENLLLDEYFVEITKKYQQAVREVVAIAVQAGVP VPTFSSAIAYYDSYRSDRLPANLIQAQRDYFGAHTYERTDKEGIYHYSWYNEE >gi|307679315|gb|GL456412.1| GENE 4 4502 - 4681 322 59 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29375627|ref|NP_814781.1| 50S ribosomal protein L32 [Enterococcus faecalis V583] # 1 59 1 59 59 128 100 1e-28 MAVPARRTSKAKKAKRRTHYKLTIKGLNACSNCGEMKKSHHVCPACGHYDGKDVMSKEA >gi|307679315|gb|GL456412.1| GENE 5 4738 - 5307 646 189 aa, chain - ## HITS:1 COG:L39365 KEGG:ns NR:ns ## COG: L39365 COG1399 # Protein_GI_number: 15673577 # Func_class: R General function prediction only # Function: Predicted metal-binding, possibly nucleic acid-binding protein # Organism: Lactococcus lactis # 1 170 1 167 176 115 42.0 5e-26 MKWSLLELNKYKEEPLVFSETLHLKEELLQRDDTLLDVSPIKVEGLLAVNKSEYLLHYTI QVTVTVPSSRSLEPVALPMQITVDEVFMTKEQMDTRDERFAAEEIILLDKPTIDLDESVE DNILLSIPIQVLTEEEQNSQEMPSGNDWEVISEEAYLESKQKAAEQTVDPRLAKLSELLS DNAEEEDNS >gi|307679315|gb|GL456412.1| GENE 6 5681 - 7438 2447 585 aa, chain - ## HITS:1 COG:lin1605_1 KEGG:ns NR:ns ## COG: lin1605_1 COG0469 # Protein_GI_number: 16800673 # Func_class: G Carbohydrate transport and metabolism # Function: Pyruvate kinase # Organism: Listeria innocua # 1 475 1 475 475 683 77.0 0 MKKTKIVCTIGPASESVDMLVNLINAGMNVCRLNFSHGDYEEHGARIKNIREAVKITGKR VAILLDTKGPEIRTNDMENGAITMKIGDSVRISMTEVLGTNEKFSITYPELINDVNVGSH ILLDDGLIDLEVTDIDRDANEIVTVVKNEGVLKNKKGVNVPGVSVNLPGITEKDANDIRF GIGQGIDFIAASFVRRASDVLEITKILEEENATHIQIIPKIENQEGIDNIDEILKVSDGL MVARGDMGVEIPTEDVPVVQKALIKKCNALGKPVITATQMLDSMQRNPRPTRAEANDVAN AIYDGTDAVMLSGETAAGDYPLEAVQTMARIAVRTEETLVNQDSFALKLYSKTDMTEAIG QSVGHTARNLGIQTIVAATESGHTARMISKYRPKAHIVAITFSEQKARSLSLSWGVYATV ADKPSSTDEMFNLASKVSQEEGYASEGDLIIITAGVPVGEKGTTNLMKIQMIGSKLVQGQ GVGEEAIIAKAVVAGTAEEAVAKATEGAILVTKTTDKEYMPAIEKASALVVEEGGLTSHA AVVAIAQNIPVIVGAADATSLINNDEVITVDPRRGIVYRGATTAI >gi|307679315|gb|GL456412.1| GENE 7 7503 - 8465 1394 320 aa, chain - ## HITS:1 COG:lin1606 KEGG:ns NR:ns ## COG: lin1606 COG0205 # Protein_GI_number: 16800674 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphofructokinase # Organism: Listeria innocua # 1 314 1 313 319 439 71.0 1e-123 MKRIGILTSGGDAPGMNAAIRAVVRKSIFDGIEVYGINYGFAGLVAGDIRRLDVADVGDK IQRGGTFLYSARYPEFATEEGQLKGIEQLKKFGIEGLVVIGGDGSYHGAMALTKRGFPAV GIPGTIDNDIPGTDFTIGFDTAINTVLESIDRIRDTATSHVRTFVIEVMGRNAGDIALWS GVAGGADEIIIPEHDFDMKNVAKRIQEGRDRGKKHCLIILAEGVMGGNEFADKLSEYGDF HTRVSILGHVVRGGSPSARDRVLASKFGSYAVELLKEGKGGLCIGMLDNQVVAADIIDTL ENNKHKPDLSLYELNHEISF >gi|307679315|gb|GL456412.1| GENE 8 8638 - 11967 2873 1109 aa, chain - ## HITS:1 COG:lin1609 KEGG:ns NR:ns ## COG: lin1609 COG0587 # Protein_GI_number: 16800677 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Listeria innocua # 1 1109 1 1108 1108 872 44.0 0 MSFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQ PIIGLRLEYTPAEKEGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFYLAEHQSLLSDLF AVTLSAKGEVAQTFFEDEQQAVHAFQQLASYFDPQSLFVEHSFSMNQQRNPALFSFYQRE QLPGVALQEVRHLTKEEGFAVTVLESIKENNQLNITSQTPEIEGLNYLREAETTMEQILQ IAGAEVVQNTIQLAGNCRVDIPLHQKLLPHFPVLANQTAGSYLRTLCLEKLPERVPHLNE VYQKRLEKELTIIHNMGFDDYFLIVWDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDV DPIKYDLLFERFLNPERYTMPDIDLDIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAK MVLRDVARVFGLSQSEANRWSAAVPNKLKITLEEAYQESKRMQELVNFSPNNQLLYKTAV QLEGLPRHVSTHAAGVVISDENLLNLVPLQPGSNEILLTQFTMNDVEKIGLLKMDFLGLR NLSIIDDTLTAVKRVYNQTIRLNQIPLNDETTLALFRKGETSGVFQFESAGIRNVLRKLG PTSIEDIAAVNALYRPGPMQNIDVFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIM QVAAKMAGFSLGQADILRRAISKKKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERF ANYGFNRSHAFAYSFIGFQMAYLKVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTI LQPSINQSHYSFYLNQQQQILFGFSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDR KWLKVENIEPLIAIGAFDEIAPNRRQLAVGLESNIQSILLSGGSMDLLETLKPKEEEIAD YPLEERLEQEEQYLGVYLSGHPTEEFKKTRLAKQTQLVHELVENQPTKLLIYVKNIRTIR TKKGEQMAFVDGDDTTGSISLTLFPTVFRQLRQSVEKGQVYYVEGKVERSTYNQELQILV QRIEKAQQVETSISDETCFIRITKDVEQTDVFQKMKEVLSRHAGHIPVIVYFEKTGKKIV LNEENWVAHTSASQQQLAYVLGEQNVIFK >gi|307679315|gb|GL456412.1| GENE 9 12085 - 12270 283 61 aa, chain + ## HITS:1 COG:no KEGG:EF1043 NR:ns ## KEGG: EF1043 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 61 1 61 61 101 100.0 1e-20 MRYLVVFFWTFALGQVVGYIGGALSGGSYDFKMTTILSLATAVIILLIAHFAVPKETKPV K >gi|307679315|gb|GL456412.1| GENE 10 12325 - 13521 958 398 aa, chain - ## HITS:1 COG:L60571 KEGG:ns NR:ns ## COG: L60571 COG0477 # Protein_GI_number: 15672648 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 3 397 7 401 405 430 57.0 1e-120 MKIKWKQNLLVAWIGCFFTGASISLVMPFIPVYVEQLGTPKSQVELFSGLAISVTAFAAA IVAPIWGNLADRKGRKIMMIRAAAGMTITMGALAFVPNVYWLLIMRFMNGILSGYIPNVT AMIASQAPKEKNGWALGTLSTGAIAGTLIAPSIGGALAQWFGMENVFIITGVILFITTLL TIFLVKEDFQPVEKKDLLTTKEIFSKMDHVSVLIGLFVTTLILQLGITSISPILTLYIRS LSGDTENVLFVSGLIVSIAGVSAIISSPTLGKIGDRIGNQKVLLGGLILSFICYIPMAFV QTPFQLGVLRFLLGFSTGALMPSINTLISKITPTEGVSRVYSYNQMCSNFGQVLGPMVGS TVAHGFGYSSVFLVTACFVLGNIGLSFFNFRKVLNKKL >gi|307679315|gb|GL456412.1| GENE 11 13731 - 15137 1501 468 aa, chain - ## HITS:1 COG:SPy1736 KEGG:ns NR:ns ## COG: SPy1736 COG2252 # Protein_GI_number: 15675585 # Func_class: R General function prediction only # Function: Permeases # Organism: Streptococcus pyogenes M1 GAS # 1 468 1 486 486 503 66.0 1e-142 MNTFFKLKENKTTVSTEIMAGVTTFFAMSYILFVNPSILSETGMPFQAVFLATIIASIIG TLIMGLFANVPYAQAPGMGLNAFFTFTVVFGMGYTWQQALAMVFICGLINILITVTKIRK MIIKAIPESLQHAIGGGIGIFVAYVGLKNAGLLSFTVQAEPQNGVVNGSSIVPALGNFDN PAIILAVIGLVLTTILVVTNVRGAILIGIVVTTLVAIPMGVVDTASVDWHANSLGNSFKE LGTTFGAAFGAEGLQSLFSDSSKIPQVLMTIIAFSLSDTFDTIGTFIGTGRRTGIFSKED ELALEDSKGFSTKMDKALFADAIATSIGAIFGTSNTTTYVESAAGIGAGGRTGLTSVVVA ILFALSSLFSPLIAIVPAQATAPALILVGIMMLASFKDINWTDLEDAIPAFFASIFMGLC YSISYGIAAGFIFYAVVKVVKGKAKEVSPIIWVIDALFILNFVILAIL >gi|307679315|gb|GL456412.1| GENE 12 15289 - 15918 457 209 aa, chain - ## HITS:1 COG:lin2252 KEGG:ns NR:ns ## COG: lin2252 COG4330 # Protein_GI_number: 16801316 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 9 185 9 191 213 79 33.0 4e-15 MKNSRNYLRVITLIYCIYMWLFATHFHFMALNVLLAYIPIELSYLLNAEKRKRDWLIGFA WLIFYPNAPYLFTDFFHLETLSIYRGFNTIFANQIGDWWAFVCLTSGIVIYGLLGMKTVT TVSQKLQSYCGYRTIVVFQASLHFLSALAIYVGRFDRLHSVYLFMSPIETVKIIFFDWSL QKLMFILLMMFLQMLLFGLIQLLGKEEAM >gi|307679315|gb|GL456412.1| GENE 13 16070 - 16873 1020 267 aa, chain + ## HITS:1 COG:SP0286 KEGG:ns NR:ns ## COG: SP0286 COG0561 # Protein_GI_number: 15900220 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Streptococcus pneumoniae TIGR4 # 2 263 3 267 270 209 40.0 4e-54 MKKLIAIDLDGTTLNAQSLISPKTEQTLKKAIDNGHYVSIATGRPYRMSHQFYQQLGLTT PMVNFNGALVHIPEKKWDLESEANIERDLVFDILAQKKELQLDFVAAENKETFYIDTLDG FDPKFFASKATLDNLLTAKNLRTNPTSMMVRTTPNQAEKVADTLTKQYGDYIDVRTWGGP MPILEMVAKGIQKAHGVDQVANFLSVKPADIIAFGDEHNDEEMLSYAGWGVAMNNATDKI KSVANDVTEKTNDQDGLADYLENYLDL >gi|307679315|gb|GL456412.1| GENE 14 17015 - 18100 1043 361 aa, chain - ## HITS:1 COG:no KEGG:EF1038 NR:ns ## KEGG: EF1038 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 361 1 361 361 635 98.0 1e-180 MKHIKGMLVFIGLFILVGCAPDQEPTKQTTSGPQETKQVKQVTVTNQTTSAAEKQAPTKN EELIANQLTFDSHEYTYEVVTGATQTTFGTTPPAKYTPEEKKEKMFWSNQPPLGLMTGNY YKNEGVFTGGNYGIVEIITEPETQRILNVEFTEFASDPYYDTRYSGVNKRLSDYPEFQAS NTRTDDTLVTVVNGITYVEKQMRDENRVTGNFYTVRGSSTSAREGLMPLAAEMDTWLKEP SKETYIGYAEDLGNGLIGRLQVITEEQKIKHVSYDEYFSDEQEKITETALRPFYRQSKYY SPGYNKQTNNSFIHFVDTLTTAITTQQTLSVNEEQELQHPSFTTYQRLAEKISTFQNSLK E >gi|307679315|gb|GL456412.1| GENE 15 18243 - 19853 1638 536 aa, chain - ## HITS:1 COG:MJ0001 KEGG:ns NR:ns ## COG: MJ0001 COG0436 # Protein_GI_number: 15668173 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Methanococcus jannaschii # 186 349 103 251 375 61 27.0 4e-09 MITSDELTENLSPFELSLFLEKKLHEENHNLETLLNAGRGNPNWTAPTPREAFFLLGQFA TKETLREGSEQTAGMIQPSFGRTQRFLNFLAENPSKGATFLQEIWTAEHNYFGMDKEMWL DAMLDYVIGDNYPNPVRCLKACEQPIKAYLNQELFSSEAQPFDIFAVEGGTAGICYLFDT LANNYLLEKGDRIALLLPTFAPYLEIPELPRYDFDVVKIKAEQMIIDGKTTYQYSNKEID KLKDPSIKAVFVVNPSNPTANAMGKPTIEQIKQIVAVDNPKLMILTDDVYGTFVPAFRSL FTELPYNTACIYSYSKYFGATGWRVGTIAVSQENIFDQLLKELPVARKMELQARYATLNA DTSQINFISRLVADSRDIALNHAAGLSSIQQAMMALFSLYALLKDGQAYKDEVMDICHTR EKLLFRTLGIEEPLASLNTAYYCEINFRDWTEKRYGPEFSSYLTKSWTITKVLTSLAKKE KLMLLKADAFGSDKWSVRISLANLATNQYSEVGKRMIRLSEHIKEEWLRQKRQAIK >gi|307679315|gb|GL456412.1| GENE 16 20013 - 20414 589 133 aa, chain - ## HITS:1 COG:BH1654 KEGG:ns NR:ns ## COG: BH1654 COG0105 # Protein_GI_number: 15614217 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside diphosphate kinase # Organism: Bacillus halodurans # 3 132 2 131 147 133 50.0 6e-32 MKETSLVIIKPDGVERKLVGKIIQRFEDKGIDLLHLKFERLTVETVKEHYEHLKDELFFP ELLAYMTSGPVVVMVVVGDNVVKKVRKLVGATNPLDAESGTLRADYGLSVTKNLIHASDS VQSAKIEMQRFFG >gi|307679315|gb|GL456412.1| GENE 17 20533 - 21186 734 217 aa, chain - ## HITS:1 COG:no KEGG:EF1035 NR:ns ## KEGG: EF1035 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 217 1 217 217 361 99.0 1e-98 MKLNGIIMIAVVGSVLSSCGWQKSKEESQKVQTVQTNNVNTEETRAISATEVSQTTALEL EQTTQTQELTELVTEEGTIWNQQKAKQLGQYMETWGQERNQNYQAYQPGHSVAFYTIQVP DDLLSYEPKIQPAIGNNPIWLNWSETGSEGGYCLVAVYSDSATQVAQKHVYLFTLVNGEA KVYVSKEQPAEEQPYLFLKETSNTELKEQFTNLVNNL >gi|307679315|gb|GL456412.1| GENE 18 21229 - 22158 784 309 aa, chain - ## HITS:1 COG:MA3040 KEGG:ns NR:ns ## COG: MA3040 COG3173 # Protein_GI_number: 20091858 # Func_class: R General function prediction only # Function: Predicted aminoglycoside phosphotransferase # Organism: Methanosarcina acetivorans str.C2A # 1 299 2 298 304 187 34.0 3e-47 MRAFEKIPAFQQWQKVEAIHRGWSTDLKFKVTKNQETFLLRIFQQEELLAKQQEYQFIKK VAALGFPSSKPFLCAPIPESEQGYMLLTYLEGEDLSGVLPALSPKGQLNLGVEAGRYLNK IHKLLLPERISQREIARNLYEKKQSQLNKYKESQFCMPYQQPIISYLEKQLPLLQQRPVV YQHGDFHAGNFIYLPTRQVGVIDFNRWDFGDPYEEFYKLQFFSRNVSPLFAYGQLQGYFA GKVPTLFWQFQKLYTFHAGLYSLVWALSFGEKEIRTMEQQYQQLLEDYNCGELLVPKWFS TIQRKGLRF >gi|307679315|gb|GL456412.1| GENE 19 22253 - 24568 2590 771 aa, chain - ## HITS:1 COG:SPy0902 KEGG:ns NR:ns ## COG: SPy0902 COG0154 # Protein_GI_number: 15674924 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases # Organism: Streptococcus pyogenes M1 GAS # 113 571 3 475 484 261 38.0 3e-69 MKKSILFKKLGIILLISQTLVGVPMLAQESILETTVQTETESVTTETSQTVANLESETTS QTVMQEKESSSAIAESSSGNAVAVTTETTNEIQNSDTDGKAVSAESVFSEADYKQATALE LATLVREKKVTSEELVKIALAITKRENPTLNAVITLREEAALTEAKALQDTGQPFLGVPL LLKGLGQSLKGESNTNGFGFLRDQVAGGTSTFVKALQNAGFIIIGQTNYPELGWKNISDS KLYGVSVNPWNPNHYSGGSSGGAGASVAAAFVPIASGSDAGGSIRIPASWTGTVGLKPSR GVIIGNSNSAKGQTVHFGLSRTVADTNALFETLLTKKDLPTGHLSQAQPIAYTTESPAGT PVSAEAKEAVAEAVAFLKDQGYTLVEVKHPVDGERLMKNYYTVAAGSAGIADFMARQKLK RPLERNDVELLTWALFQTGKNITSEETTAAWTDIALQAQAMDEFYQQYPILLTPTTAATA PSIDNPLLKPEHAAQMEKIDQLSPAEQKQLIYDQWLTAFTYTPFTQQANLFGHPALSVPT YVSKEGLPLGIQFNSALNEDRTLLQLGALFENNHKINQPHVEEPDKDKEPDTSGEPDKDK EPNASGELDKDKDPDASGEPDKDKDPDASGEPDKDKEPDASGEPDKDKELDTSGEPDKDK ETKTSEGPIEGKDQNQNQNQNQNQNQNPDKSGKTTSESSLDNSLNSSANQGTKSTESTHA FSDKNMIGKKEQLPKKVLPKAGAEVPSTFWIVLGGAFLVTSGTIYIRKTRK >gi|307679315|gb|GL456412.1| GENE 20 24730 - 26967 1630 745 aa, chain + ## HITS:1 COG:CAC1464 KEGG:ns NR:ns ## COG: CAC1464 COG0178 # Protein_GI_number: 15894743 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Clostridium acetobutylicum # 2 745 8 750 755 801 51.0 0 MEWIEIKHASQNNLKNISVNIPKKQLTVVTGLSGSGKSSLVFDTLAAESRRELNDTFSSF VQNYLPKYGRPEVEKIENLPVAIVIDQKKVAGNSRSTVGTYTDIYTFLRLLFSRAGSPFV GYSDTFSFNHPDGKCPTCDGLGKITEINLHQLVDYDKSLNEGPIDFPTFTVGNWRWKRYA HSGLFDLDKKIKDYSPEELALFLYAPQQKLANPPKEWPHTALYEGIVPRMQRSILHTDEG KRHQKYLNHFVTVKRCPDCLGSRVNERVRSCKINQKSIADAVDMPLTELHSFIRSMDLSL IKTIQEELLVRLEALINIGLSYLTLGRATETLSGGEAQRIKIAKYVNSALNDIMYILDEP SAGLHPKDIERISRALLNLKNKGNTVVLVEHNPQLIREADFIIDIGPFAGENGGHVQFSG TYDAFLASKTLTSQALQEPLPLNDQPRKARKSLSIEHATLHNLNNLSVEVPLGVLTVICG VAGSGKSSLAEEIYQKAQADNQEIIHLSQKSITANLRSTPMTYLNIFDKVRKLFAEENHV SPALFSYNSKGACPTCKGKGIIVSDMSFMEDVTSICETCHGTRYKEEVLHYLYNGKNIVE VLALSVKDGYDFFKDQPFALSLKNLLEVGLSYLKLNQSLSTLSGGELQRVKLADTLHQKK AIYLMDEPTDGLHLIDIQQSLQLFNRMVEEGNSLILLEHHIDVIKSADWLIELGPEGGEN GGQLLFTGTPANMLNSTHSITKGYL >gi|307679315|gb|GL456412.1| GENE 21 27071 - 27727 491 218 aa, chain - ## HITS:1 COG:BH3238 KEGG:ns NR:ns ## COG: BH3238 COG0775 # Protein_GI_number: 15615800 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Bacillus halodurans # 3 205 4 218 233 94 30.0 2e-19 MKLGVIAAMDLELQKLLEYFPPQRKIQLAKNTFYIYEQKTSQVIMVCAGQGKTNATLYSQ ILIDSFQIEQLINIGICGCLNEKLQLFEMVLGEEYCHYDIRERQSINKFPYQLYYKGDKG MLAELQHLDEKIKCVRFGTGEGFVCDTTEKRNLIEQFSIDCVDMESAAIAQCCFLNDCAF VSIRIICDRADANAVKVTEDTQIQAMEKVFELVCAYIN >gi|307679315|gb|GL456412.1| GENE 22 27744 - 28799 1015 351 aa, chain - ## HITS:1 COG:no KEGG:EF1030 NR:ns ## KEGG: EF1030 # Name: not_defined # Def: endonuclease/exonuclease/phosphatase family protein # Organism: E.faecalis # Pathway: not_defined # 1 351 1 351 351 669 98.0 0 MKKFFKYLGSLMVLLLSIALILIGYLTFREFRPRAVEPVAINKQFSEQTIEKHQSISLVT YNIGYAGLGQTEDFFMDGGKTVQPVNKAMVQQNLTGIEGTLKELPAMIYLFQEVDRRSQR SYEVNQEEELQKQLQLNSAFAYNFKVDYVPIPWPPIGRVESGLLTLSNEKITEAKRIALP NPFRWPVSISNLKRALLETRFPIEGTDKELVVFNLHLEAYDNGEGKIAQSKKLADVLSQE YAKGNYVIAGGDFNQVFKGSHRYPDLGEAGWAPGEIDPADLPKHFSLAYDDQQPTVRVLN KPYTGSYETSQVYVIDGFIVSDNVAVHSVKTKDEQFKYTDHQPVKMEVGLK >gi|307679315|gb|GL456412.1| GENE 23 28822 - 29406 621 194 aa, chain - ## HITS:1 COG:no KEGG:EF1029 NR:ns ## KEGG: EF1029 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 194 1 194 194 344 98.0 1e-93 MSLIVLIGAQAVGKMTVGKALEKQLDAKLLFNHQTIDLFANYLGYTERAFQLSDSVRKEL FHAFVENPATNTTKNIIFTVVIAFDQEQDFQFLEEISEIFLSKHESVYFVELVSSTSIRL ERNVHPERLEAKPSKRDVDFSRKELLNTFKEHRLVSHEGELESTFPNVKITKINNSNMTP EEVATKIIATFGLT >gi|307679315|gb|GL456412.1| GENE 24 29583 - 30317 553 244 aa, chain + ## HITS:1 COG:lin2547 KEGG:ns NR:ns ## COG: lin2547 COG0596 # Protein_GI_number: 16801609 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Listeria innocua # 10 240 5 233 239 102 28.0 8e-22 MAIEKYFQTIDGSQIFYQIFGKETNYPLVLLHGNGNDHTFFNYQISYFSKEYQVIAVDTR GHGRSTNTQSQLTFPLLAEDLAGIIQQEHLTKINLLGFSDGANIAMVFTHLYPDFVNKLV LNSGNVTMSGLKKYVTIATYFQYWFCRIGAFFSKKLRTRLPIVALLFEDTGLTKQDLEHI PCPTLVITGSRDLIALSHSRAIADAIPDGKLVLVNKQGHLFAKNSPDIFNKTIEKFLKEM KVSK >gi|307679315|gb|GL456412.1| GENE 25 30314 - 32845 2108 843 aa, chain + ## HITS:1 COG:lin1803_2 KEGG:ns NR:ns ## COG: lin1803_2 COG2898 # Protein_GI_number: 16800871 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 249 837 1 585 613 488 42.0 1e-137 MKQIIHWIKTHTGLLKTLFVIAVSIIVVAQLLSIGKTISFEQLKQIFDEIPLWKLLLMMV IGLVSVTPMLNYDLTLNRILNLKVSKRELLESSWIVNTINNIGGFGGLVSMGLRSEFYGN KTEEKKILPALTHILLFVLSGLSIYSILCFFLVQFDPKMAYLQQYWIWLLGGGLYFPLLY LILHFQKNSSFGNLDAKNRLSLVVSSFLEWTGVLITFISIGYLLDVPIPLIDIVPLYVAA SIIGIASMIPGALGSFDVMMILGLSNLGVDREIIVLWLLLYRLFYYIIPFLIGCLFFTKH LSQKLDTHYRQLLKQITLEIAHKLEVVLLYFSGIMMVLLATIPEAFTQVHWLRDINPFRS HIIIQIPSIVLGFALLIMGRGIADRVKRAYYPTIILLIGAILYSFVVDFSMFSIFYLAIL LFIVIFSKSELYREQLVYSWEWMTIDGFIFGLLTLLYLVIGVYNLPNFPHHRHHFVEFFL FPSERIWLSGFIAILLVMSFNFLFVRYLQGKKHQVGEFPEDSILHNILTTYGGNIDSELV FLHDKQVFLYPKEEPTVFLQFNTINNKCVVMGNPSGNKEDFPAAIDAFLKETDRFGYVPV FYETNEDSVMLLHEYGYEFIKMGEEALVNLETFTMSGKKFKGTRAVFNKITKAGYSFDVL QPPFSAEQMHELKAISDSWLDNRKEKGFSLGFFDEAYLQRNPIAVVRNAEGEMVSFANII PSYTNEVGTIDLMRHHKEKAPSGSMDFLFIHLFEYMKTENIHYFNLGMAPLANVGQSRKS FIQERIAALIYEFGSEIYSFQGLREYKEKFASKWQPRYTLYSKSSWIVYVMIALLIVDQK NID >gi|307679315|gb|GL456412.1| GENE 26 32916 - 33728 1002 270 aa, chain - ## HITS:1 COG:lin1980 KEGG:ns NR:ns ## COG: lin1980 COG1806 # Protein_GI_number: 16801046 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 264 1 264 270 225 45.0 7e-59 MKKEIIVYTISDSLGETSQKLLAAASAQYPDISFLNRYNFSFVTTEEELLEILKDALKDK ALVVSTLVSKQLITAAKEFSERTGLLYLDLMAPFFELIQAKAGVDPIEEPGRRHQLDRAY FDKISAIEFAVKYDDGKNPQGFLDSDILLLGVSRTSKTPVSMYLANQGYRVSNLPLIPEV PLPPILEEMDPQKMIGLVCSPETLGQIRSSRLASLGLGNETSYTNVERIEQELAYAEEIF AKYGIPVIDVTAKSVEETAFLIKEKLDERN >gi|307679315|gb|GL456412.1| GENE 27 33741 - 34370 821 209 aa, chain - ## HITS:1 COG:SA1393 KEGG:ns NR:ns ## COG: SA1393 COG0517 # Protein_GI_number: 15927144 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Staphylococcus aureus N315 # 1 204 1 207 207 160 42.0 1e-39 MKLSKRQEQIIAVVKEHQPVSGERISDILAVSRATLRSDLSFLTLSGILKASPKVGYTYE SDNMEAFFFFDVFQTKVQEIMSPPLMVAQDTSIRDAITNLFMYDVGSLYVMDEAKELLGV LSRKDLLRASLNTNIDGTPVAVCMTRVPHVKTCTPEFTILEAADTLQKYEVDSLPVVEKE NPKKVIGKITKTKILTYITQQAKEAAQNR >gi|307679315|gb|GL456412.1| GENE 28 34540 - 37185 2585 881 aa, chain + ## HITS:1 COG:lin1981 KEGG:ns NR:ns ## COG: lin1981 COG0574 # Protein_GI_number: 16801047 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase # Organism: Listeria innocua # 1 857 1 860 879 934 55.0 0 MKKFIYSFNETHNEGKETLGGKGANLAEMTRLGLPIPQGFTITTRCCMDYLADATFFEEH LQSEILKAVKNLETETGKSFTADNEILLVSVRSGAAFSMPGMMDTILNLGLNDQRVKKFA TLTSPGFAFDCYRRLIQMFGDVVYHIPKELFDQQKERLEQELNKKITAFQEADHFALIVR YQEVFEQHQVVFPQDPVAQLFEAIKAVFDSWNNQRAVVYRNLHHIAHDLGTAVNIQEMVF GNRGLDSGTGVVFTRNPVTGENQLFGEFLLNAQGEDVVAGIRTPEPIRRLRLTMPKVYQD FRHYAELLEYHYRDMQDIEFTIENEKLYILQTRNGKRTAAATVKIALDLAKENRITKQEA LLRVTPDTIDQLIHPVFDQEKRQHMERLAMGLPASPGAASGQIVFTAEKAKELTNLGKKV ILVRQETSPEDIEGMVVSEAIVTSRGGMTSHAAVVARGMGTCCVTGCESLTVNEETKQLH CGPQVILEGTIISVDGSTGEIYLGEIPTISADNNDDLQELLSWADAYADLTVRANAETTQ DLETAIRFGAAGIGLARTEHMFFGEERVLEMRRLILAESEKEATYALEQLLHFQQEDFYQ MLKVVQDKPMVVRLLDPPMHEFLPHEKNDIQLLAKQLQRFPVTIAKQIERLQETNPMLGH RGCRLGVTQPQIYKMQVTALFTSAIRLVKEGITVYPEVMIPLIAEKEELLYLKRILKETI DGLFEEHKMTPFPYEIGTMIELPRACLIADQLAEEADFFSFGTNDLTQMTYGFSRDDIGK FINTYREKKIITQDPFQSLDQTGVGQLIQLAVEKARRTKPNMSIGVCGEVGGDPQSITFF QTLGLNYISCSPYRVPIAKLAAAQAKILTEPAVTEEQMVLL >gi|307679315|gb|GL456412.1| GENE 29 37299 - 37631 556 110 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29375603|ref|NP_814757.1| hypothetical protein EF1023 [Enterococcus faecalis V583] # 1 110 1 110 110 218 98 8e-56 MAITINIYYSGTNGRAREFAKEMIASGIVEAIRAEKGNSRYEYFFPMDDEETVLLIDSWT DQEALDKHHASPMMTRITELREKYDLHMKVERYVSDVTDPLTKDVAFIRK >gi|307679315|gb|GL456412.1| GENE 30 37857 - 37976 178 39 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAKTKQEKVARNNKIGQYIAIATGLYYLGKMILDRRQKK >gi|307679315|gb|GL456412.1| GENE 31 38059 - 39252 1377 397 aa, chain - ## HITS:1 COG:L174946 KEGG:ns NR:ns ## COG: L174946 COG4552 # Protein_GI_number: 15672154 # Func_class: R General function prediction only # Function: Predicted acetyltransferase involved in intracellular survival and related acetyltransferases # Organism: Lactococcus lactis # 15 336 9 332 350 170 35.0 5e-42 MTTKRVKKMGKEEMKEMFDLVIYAFNQEPTAERQERFEKLLSHTQSYGFLIDEQLTSQVM ATPFQVNFHGVRYPMAGIGYVASYPEYRGEGGISAIMKEMLADLAKQKVALSYLAPFSYP FYRQYGYEQTFEQAEYTIKTEDWPRVKRVPGTIKRVSWADGKEVIKDVYLENQRAHSGGV IRETWWLDYTLNRASKPNNQAIYYSSEGKAEGYVIYRIAAGTFEIVEWNYLTNTAFKALA GFIGSHSGSVQSFHWINGFAGKDLNDLMPTPAASVKILPYMMARIVELQTFLEKYPFQSG EKETYSLEIEDSYGPWNEGIWTITIDEQGKATVTKGAAEKEGTAALKADIQTWTQLFLGY RSAETLSFYERLQGDATTAQRLGQRLVKGMPILEDYF >gi|307679315|gb|GL456412.1| GENE 32 39310 - 40704 1707 464 aa, chain - ## HITS:1 COG:BS_ydhP KEGG:ns NR:ns ## COG: BS_ydhP COG2723 # Protein_GI_number: 16077651 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Bacillus subtilis # 2 464 6 465 465 644 65.0 0 MKYQFPENFWWGSAASGPQTEGVFEGDGKGQNIWDFWYQEAPEKFFQQVGPDKTSQFYKK YQEDIQLMKETGHNSFRTSIQWSRLIPDPTTGKVNQTAVDFYNQVIDDLLEHGIEPFMNL YHFDMPMVLQEKGGWESREVVDLYVDFAKTCFELFGDRVKKWFTHNEPIVPVEGGYLYGW HYPDKVNLKEGIQVLYHEALASAKAIAVYHSMNLSGEIGIILNLTPTYPRDEHNEADVNA AKFVDGFFNRSFLDPAVKGHFPEDMVAWAKANDLLPETTPEDLAIIAENTVDLLGVNYYQ PRRAKAKETPVETRPEGLLPEDFYDVYDMPGKKMNPYRGWEIYEKGIYDTLMNLKENYGN IRCYISENGMGVEGEERFVNEQGVIEDDYRIEFVQDHLKWVHQAIQEGSNVQGYHMWTCM DNWSWLNAYKNRYGFIAVDLDDDAKRTIKKSGRWFKEMTANNGF >gi|307679315|gb|GL456412.1| GENE 33 40788 - 42065 1529 425 aa, chain - ## HITS:1 COG:lin2832 KEGG:ns NR:ns ## COG: lin2832 COG1455 # Protein_GI_number: 16801892 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Listeria innocua # 1 425 1 430 435 522 67.0 1e-148 MDGFVQWMEKHFMPKASVIAAQRHLVAIRDAFVVTMPLMILGALAVLINNIPIPGYEDFL NKIFPMMYNDAPIWKSFGGNIWNGTFAIFAVLVAFLVAHNLVKSYGKDGIAAGTVSVASF FAVGGLEGMGATGLFIALIIALISGELFQRLSGNPKLVIKMPDGVPPAVAKSFAALLPAM ITISLFSLITSILFALGIDNIVISFYEAVQQPFMGLANSYPSALLLAFITPFLWFFGLHG ANMVDPLMQTINVPAIDANIKALEAGKAIPYIVNKPFFDSFVNLGGTGATLGLLIAIFIV GRRNKPYKVITNLSLAPGLFNINEPVMFGLPIVLNPIMFIPFILVPMVLVTVAYVATATG LVPAATFMPPWVTPPIIGGFLATKSIAGGVLAAVNLLISILIYMPFVKVATDQYLKQEAA AEAAE >gi|307679315|gb|GL456412.1| GENE 34 42131 - 42451 465 106 aa, chain - ## HITS:1 COG:lin1830 KEGG:ns NR:ns ## COG: lin1830 COG1447 # Protein_GI_number: 16800897 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIA # Organism: Listeria innocua # 8 101 5 98 100 102 62.0 2e-22 MDGQQNLEAIMGLIMYGGNAKSDAMEAIAAAKSGDFELADKKIADAEESLVHAHHSQTGM LTEEAKGNNMQVTLLTVHSQDHLMTAIAFTDLAKEIIDLYRRIDNE >gi|307679315|gb|GL456412.1| GENE 35 42474 - 42800 501 108 aa, chain - ## HITS:1 COG:lin2831 KEGG:ns NR:ns ## COG: lin2831 COG1440 # Protein_GI_number: 16801891 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIB # Organism: Listeria innocua # 4 104 2 100 101 121 68.0 3e-28 MAKKTIMLVCSAGMSTSLLVTKMQKAAEDRGMEADIFAVSASEADTNLENKEVNVLLLGP QVRFMKGQFEQKLQPKGIPLDVINMADYGMMNGEKVLDQAISLMGSSN >gi|307679315|gb|GL456412.1| GENE 36 43075 - 43485 454 136 aa, chain - ## HITS:1 COG:no KEGG:EF1016 NR:ns ## KEGG: EF1016 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 136 1 136 136 211 100.0 5e-54 MEITKTLTISADEFYTQLMNSVIFDIRKQTGKTLTRKQLRKFEYIKEYSKNSRAKIVIEE AVENKTYQFRTSTTKNDFSVRYELQPIDEKSCELRYTETMVSYGALQKLNDAVLGIFLSY FKKKQFYKMLKMMETA >gi|307679315|gb|GL456412.1| GENE 37 43485 - 43679 212 64 aa, chain - ## HITS:1 COG:no KEGG:EF1015 NR:ns ## KEGG: EF1015 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 64 1 64 64 112 98.0 6e-24 MIRNGLFLCSIGFLIVLYSLNPSSLNYDLLSLTTGIFFIGLGGYLFFKGKKVAEEEATKD EVKR >gi|307679315|gb|GL456412.1| GENE 38 43699 - 43917 387 72 aa, chain - ## HITS:1 COG:no KEGG:EF1014 NR:ns ## KEGG: EF1014 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 72 1 72 72 120 100.0 2e-26 MISIASAMKQEEIITLLEAYQGENETFTFKEKNGIKLFFEVEGDPETAAQVAKQLIKEQP WGGVLYFQATVV >gi|307679315|gb|GL456412.1| GENE 39 43961 - 45424 1691 487 aa, chain - ## HITS:1 COG:lin2856 KEGG:ns NR:ns ## COG: lin2856 COG1455 # Protein_GI_number: 16801916 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Listeria innocua # 1 478 1 445 454 450 56.0 1e-126 MNGLMAWMEKYILPTAAKIGAQKHLVALRDAFIGTLPATMAGSVAVMINAIIRDLPQEFV STYAASLEADKGIFAVLNVIIGINGFVWNGTLAIAGLIFAFSWGYNLAKAYNVNELAGGI VSLATLISGVAFAPNNTAELAVKVPEKIANAINGAEIGASIANNQLTVNPWGWLNLNHLN GNAFFTVMIMGALSTIIFCKLMQADLTIKMPDSVPPAVSKAFAAILPATIALYVVAIINF TVSKLSGGQLLIDLIQKYIAEPFLGLSQGLGAVLIVTVFVQIFWFFGIHGPNVLAPVLEG IWGQAQLINIDIFQKGYEGKTGTAAVLAAIDDGKAYMWVRGSFDAFAWFGGSGGTIVLII AILLFSKRADYLTVGKLSLGPGIFNINEPIMFGLPVVLNPIMFIPFVIAPLVATTIGWVA TYLGLVAPVSQQVAWVTPPLLLSFLATGADWRAPIVALVCMVVTFLIWTPFVIAANKMDP ALGESEQ >gi|307679315|gb|GL456412.1| GENE 40 45566 - 45883 513 105 aa, chain - ## HITS:1 COG:lin2831 KEGG:ns NR:ns ## COG: lin2831 COG1440 # Protein_GI_number: 16801891 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIB # Organism: Listeria innocua # 4 104 2 100 101 120 68.0 5e-28 MAKKTIMLVCSAGMSTSLLVTKMQKAAEDRGMEADIFAVSASEADTNLENKEVNVLLLGP QVRFMKGQFEQKLQPKGIPLDVINMADYGMMNGEKVLDQAISLMG >gi|307679315|gb|GL456412.1| GENE 41 46112 - 48817 2997 901 aa, chain - ## HITS:1 COG:lin1832_1 KEGG:ns NR:ns ## COG: lin1832_1 COG1221 # Protein_GI_number: 16800899 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Listeria innocua # 1 434 1 432 432 476 56.0 1e-133 MKSRKEEILALLQKNETGLTAGAVAEQLMIDRSNASRYLNELFKEKKITRSTGRPVIYSV PTINEGEQVHVDESTSVSFDTLVGANDSLKVSIQQAKAAILYPPRGLHTIIFGKTGTGKS LFAECMYRFAIDSKTLDEDAPFVSFNCADYAQNPQLLFGHIFGVKKGAYTGANEDSPGLM AKADGGILFLDEIHRLPPEGQEMLFTFIDKGVYRPLGESGQTYEASVQIIGATTESSENF LTTFNRRIPMSITLPSLDARTLDERYAIISLFIQQEATRLGQQIDIEREAVLAFMLYDAE GNIGQVKRDLKLVCAKSFLYYRTHNLEHLVIRKRDLSLPVQKGLLKIKEVPERLDQFVDS KSNYLSFQPGTNKIVWSQDPARDMQVYNEIEEKVADLSEADLENVDLEELISKDMNAYFK NYVEELTQHSLHKELLPEAIWDLTNRLYDIAEERLEHTYNETARFAFALHLQSTIERVKE GHVIVHPDLNNVRKNMKKEFQVALDLSSIIEEENNIEIPFDEIGFISMFLSINVGKEERT PENNVGVFVLMHGDSTASSMLKTAQELLGTSIGTAMNMPLTMEVQTMYEQLRNQVITQKE SLNNGILLLTDMGSLNSFGNMLFEETGIRTKAITMTSTMIVLEAIRMASVGRSLEDIYQN IQLSFESVVREQFRSSLQKRQNVKKAVIVTCFTGEGVAAKLYQRILPVIDETKVELIQMQ FIERETFKKHIDNLMEEYEIKAIAGTVDVEYQNIPFFSVYDIFDDEKLNVLKRIASDEVA IDTIVHSLSGVITSVDSLQKLILMLQKTVHQIQTDMHIIVEPGVDAGIMIHLAFLVDALI KGEEARTFPNLAEYVKTHRLEIDVVRTNFMLIERAYRVTIPEAEVAHVTQMFLENEIKSK Q >gi|307679315|gb|GL456412.1| GENE 42 48862 - 50163 1320 433 aa, chain - ## HITS:1 COG:SPy1369 KEGG:ns NR:ns ## COG: SPy1369 COG0513 # Protein_GI_number: 15675301 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Streptococcus pyogenes M1 GAS # 4 369 2 358 361 293 43.0 4e-79 MRFLEQLPEAWQEQWQASGFNEPSTIQEKSFTPLREGENVLGISPTGTGKTLAYMLPLLL TVEKGQGNQLLIIAPSQELAMQIAEVARTWAKPLQLTVQTLIGGANVSRQIDKLKKRPEV LIGTPGRILELMKNKKVKAQLLKTIVMDEVDQLFQEEELSLTKQILTHTPTEYQLVFYSA TADRVVNQAQSLSQKLQVIDVTEEDTSAGQVAHYFIRLAPRKKADYLRRLAHTEAFRSMV FFNQVADLGAAEEKLVYENVPAIGLASDQSKQLRKLAIDQFKAERVKLLLTTDIAARGLD FTGVPYVVNVDVPLTEESYIHRSGRVGRMGAQGAVITFINDGTKRDYQRLMKQLAIPYQE IFLYDGALHEQPKAKDELEKKNVAKDTYSEKKSMKERKPETVNSVVKEPQETRKKKKNKK KNTKNKGARKAKK >gi|307679315|gb|GL456412.1| GENE 43 50190 - 51188 1277 332 aa, chain - ## HITS:1 COG:lin1837 KEGG:ns NR:ns ## COG: lin1837 COG0673 # Protein_GI_number: 16800904 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Listeria innocua # 2 332 1 327 327 283 46.0 3e-76 MIHLGVIGTNWISHQFVSAALETGAYDLTAVYSRKLATAQEFGSRYGDVEYAIDLETFFG IAHMDTVYIASPNSLHFEQAKQAILAKKNVIVEKPAFSTPDEMAEIIELANKNRVYFFEA ARNIHEQSFQKIAELLPLKNQILGANFTYMKYSSRYDQVLEGKEPNIFSPHFSGGALADL GVYLVYAALGWFGVPNESHYFASKIATGVDGLGTIILRYDQFDVTLNTGKISDSFAPSEI YFENGTLILDSVNAISSAEYHDRAHEERDVLDIQVADNPMIEEARDFAAVLNNPTDKYWG TKYEEWVELARNVNKVVTDLRHSAGIIFDADK >gi|307679315|gb|GL456412.1| GENE 44 51294 - 52025 663 243 aa, chain - ## HITS:1 COG:CAC0144 KEGG:ns NR:ns ## COG: CAC0144 COG1489 # Protein_GI_number: 15893439 # Func_class: R General function prediction only # Function: DNA-binding protein, stimulates sugar fermentation # Organism: Clostridium acetobutylicum # 1 230 1 226 230 189 45.0 3e-48 MKYPNVQLAYFIERPNRFIAHCRLMETNEEVVTHVKNTGRGKEVFLPGAVVALSYQPSPK RKTDYDLIAVKKGSFWINIDSQVPNTLVNEALKNGQIVLPGLVGTIQTVKREQRFAHSKF DFLVETNADEQAFVEVKGMTLENKGIGAFPDAPTLRGLKHVTELMAATKAGYRCYVLFVV QFEEIKQATIHQEMQPAFAENVGAAIDQGVQVLAYNCHVTPATIELKSQVTFDLLQAFDD PNK >gi|307679315|gb|GL456412.1| GENE 45 52224 - 52592 320 122 aa, chain + ## HITS:1 COG:no KEGG:EF1006 NR:ns ## KEGG: EF1006 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 122 1 122 122 243 100.0 1e-63 MKKHWTFLVGASLLTGLAGSILWKKNKQLPSPQELQHNYTGHWWFVDVKKATQHTLEITS SFNVFIDGKQTHALLVELTPKRLVILDKLGYHLIIQCENGVPATLYDEADDETYTLERAI YN >gi|307679315|gb|GL456412.1| GENE 46 52764 - 53432 867 222 aa, chain + ## HITS:1 COG:SPy0450 KEGG:ns NR:ns ## COG: SPy0450 COG1321 # Protein_GI_number: 15674572 # Func_class: K Transcription # Function: Mn-dependent transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 1 215 1 215 215 158 40.0 7e-39 MTPNREDYLKLIFELGGDEVKVNNKQIVSGLDVSAASVSEMISKLVKEDLVEHSPYQGVQ LTEKGLKKASTLIRKHRIWEVFLVEHLNYTWNDVHEEAEVLEHVTSQTLVNRLADYLNHP EFCPHGGVIPEDNQPIHEEKRQTLTDYPVGTKIRIARVLDEKELLDYLVSIDLNIQEEYT IKEIAAYEGPITIYNENKELSVSFKAANTIFVEPLIRESEEN >gi|307679315|gb|GL456412.1| GENE 47 53432 - 54955 1588 507 aa, chain + ## HITS:1 COG:L0044 KEGG:ns NR:ns ## COG: L0044 COG0364 # Protein_GI_number: 15674202 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate 1-dehydrogenase # Organism: Lactococcus lactis # 3 507 4 503 503 667 64.0 0 MNEKVALFTIFGGTGDLAKRKLYPSLFRLYKKGLLAERFAVIGTARREWTDEYYREIVRE TIQDLNPTAEEATEFSSHFYYQSHNVNDTEHYNTLKELSDRLNEQYHLEGNHVYYLAMAP QFFGTIVNHLKSQHIISEEGFDRLIIEKPFGSDYESAYELNEEIRAAFPEQDIFRIDHYL GKEMIQNISAIRFANNIFESQWNNRYIDNVQITFAESLGVEDRGGYYDHSGALKDMVQNH ILQVVALLSMEPPVAFSEKEIRTEKVKALRAIRLYSEEEALQNFVRGQYGEGQLADQTFA AYRDEPNVAETSSTETFVAGKFLIDNFRWSGVPFYVRTGKRLTEKGTRINIVFKQVPINV FKDDTCEECDKTDLPPNVLTIYIQPTEGFSLTLNGKEIGQGFNTTPVKLDFRQSAEMTEN SPEAYEKLLLDCLNGDSTNFSHWDEVAQSWRIIDIIRHAWDKTDVSFPNYAAGTMGPQAA FDLLEKDGFTWEWQPDNWYRDRGQLDQ >gi|307679315|gb|GL456412.1| GENE 48 55007 - 57787 3282 926 aa, chain - ## HITS:1 COG:L0350 KEGG:ns NR:ns ## COG: L0350 COG0060 # Protein_GI_number: 15673845 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Lactococcus lactis # 1 926 1 931 932 1355 68.0 0 MKMKETLQLGKTAFPMRGNLPNREAEWQKDWEEKGLYEQRQKLNEGKPTFVLHDGPPYAN GNIHLGHSLNKISKDIIIRSKSMSGFRSPYVPGWDTHGLPIEQVLTNKGVKRKEMTVAEY REKCKEYALSQVDKQRNDFKRLGVSGDWEHPYITLDPEYEAAEIRVFGKMAEKGYIYKGL KPIYWSPSSESSLAEAEIEYKDVKSPSIYVAFNVADGKGLLDNETAFVIWTTTPWTLPAN LGISVNPDFTYVEVKADGRKFVIAKDLLATVKEAVGWEEVEVLREFSGEKLDRMTAQHPF YDRTSLVMLGDHVTLDAGTGLVHTAPGHGEDDYIVSRKYDLPVISPVDSRGVFTDEAPGF EGIFYDKANPMITELLEEKGALLKLDFFTHSYPHDWRTKKPVIYRATTQWFASISKFRQD ILDEVEKVDWLIPWGKTRLYNMIRDRGDWVISRQRAWGVPLPIFYAENGEAIITPETIEH VANLFAEHGSNIWFMREAKELLPAGFTHPGSPNGEFTKETDIMDVWFDSGSSHEGVLRER EELTFPADMYLEGSDQYRGWFNSSITTSVAINGVAPYKSIISQGMVLDGEGRKMSKSLGN TILPEKVINQMGADILRLWVSSVDAEADVRVSMDILNQVSEVYRKIRNTMRFLLANTSDF NPAEHTVAYADLRSVDKYMTVRLNQVIQEIRENGYEKYNFMHIYRTVMNFLTVDLSSFYL DFAKDVVYIEAENDYQRRCMQTVFYQTLVSLTKLLTPIIPHTAEEIWSFLQEEEEYVQLA EFPGYETFTNEEELMDTWAAFMDFRDNVLKALEEARHSKLIGKSLEAKVTVYPNEQIRQL MTAVDADIAQLLIVSDFEVSKEVAPSEAVQFEDMAILVEKAEGETCDRCRSVRQDVGSDE KLPTLCGRCAHIVEENYPEAVAEGFE >gi|307679315|gb|GL456412.1| GENE 49 58098 - 58799 951 233 aa, chain - ## HITS:1 COG:SP1661 KEGG:ns NR:ns ## COG: SP1661 COG3599 # Protein_GI_number: 15901496 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division initiation protein # Organism: Streptococcus pneumoniae TIGR4 # 1 194 1 183 262 124 43.0 1e-28 MALTPLDIQNKDFSTKMRGYNQDDVDDFLDQVTRDYEDALQKNRELEKSLKHAEEKLQYF NELKDALNQSIIVAQDTADKVKSSANKESEMIITSADNQAKETLVEAERKSNAMIADAEA KSTQILAEAIERARQLAGETEDLKKKTRVFHQRLSLMLETQLEQVKSEEWEEILKPFSSY VGDKHTAVKEILDEQDLDNENETVVNSEENTDAVVEKKPVIEVTEETIEEESK >gi|307679315|gb|GL456412.1| GENE 50 58851 - 58940 73 29 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFKKTILAVHSDEVVYNKKSKIFAISGLV >gi|307679315|gb|GL456412.1| GENE 51 58951 - 59733 1342 260 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29375583|ref|NP_814737.1| S4 domain-containing protein [Enterococcus faecalis V583] # 1 260 1 260 260 521 100 1e-147 MNANVYQHFRKDEHPFIDTVGDWLEQVEMQYAPYLTDFLDPRQAYILETLIRQNSDLSFT FYGGYEQAERKRCLIYPAYYIPEETDFGVVLFEIIYPSKFATLSHGKILGTLMNVGVRRE AFGDIISDGDKWQVFIAQEVAGFVVNQVDKIGKITVRLEERDYTQILIPKDGWQEERTTM SSLRLDSVISAVFNISRQRSKQLIESGKVKVNWTETTRPDFALDLLDIVSIRGFGRLQIQ ELEGKTKKEKFRVLLGVLRK >gi|307679315|gb|GL456412.1| GENE 52 59760 - 59831 132 23 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVGIIVLNLAAGGLAVILRAIVY >gi|307679315|gb|GL456412.1| GENE 53 60046 - 60690 755 214 aa, chain - ## HITS:1 COG:SA1032 KEGG:ns NR:ns ## COG: SA1032 COG1799 # Protein_GI_number: 15926772 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 6 210 7 183 187 92 34.0 7e-19 MSIFNKDALSSFFGLSGEEDDYYDNYEEYEERKAVNEPPRRAARPKPQRPVQQQESYNQP AYTQQSEPVVEKPSARYRSAEAHQERDTQQAAYTEKKVVSMRSSNQSATMNTRRAQESTA NAKTHKITIIEPRVYSEAMSIAKHLFAEEAVLVNFTLVEEDQARRIVDFLTGTVYALDGD IQRVGNEIFLCTPANMEIDSATAQSLANKQFFDF >gi|307679315|gb|GL456412.1| GENE 54 60704 - 61381 687 225 aa, chain - ## HITS:1 COG:lin2137 KEGG:ns NR:ns ## COG: lin2137 COG0325 # Protein_GI_number: 16801203 # Func_class: R General function prediction only # Function: Predicted enzyme with a TIM-barrel fold # Organism: Listeria innocua # 5 224 6 224 229 232 54.0 4e-61 MIAENLTNINNQLQLACKSSQRSVADVTMIGVTKSVGIEEAAELVQLGVQNLAENRVDKL LEKKAGLEKFNDIQWHLIGNLQRRKVKLIINEIDYFHALDSLSLAKEIQKRATKVIRCFV EVNITGEESKHGFRKEDVLPFIQELADLDKIQIVGLMTMAPFGASEEVLHATFRELKELQ MTVNEKHLSFAPCTELSMGMSNDFPIAVEEGATFIRIGTALFRDA >gi|307679315|gb|GL456412.1| GENE 55 61398 - 62630 1636 410 aa, chain - ## HITS:1 COG:L0208 KEGG:ns NR:ns ## COG: L0208 COG0206 # Protein_GI_number: 15673851 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division GTPase # Organism: Lactococcus lactis # 1 408 1 416 417 437 65.0 1e-122 MEFSLDNNINNGAVIKVIGVGGGGGNAVNRMIEENVKGVEFITANTDVQALKHSKAETVI QLGPKYTRGLGAGSQPEVGQKAAEESEQVISESLQGADMIFITAGMGGGTGTGAAPVVAK IAKELGALTVGVVTRPFSFEGPKRGRFAAEGIALLKENVDTLLIISNNRLLEVVDKKTPM LEAFREADNVLRQGVQGISDLITAPGYVNLDFADVKTVMENQGTALMGIGVASGEERVIE ATKKAISSPLLETSIDGAEQVLLNITGGLDMTLFEAQDASDIVTNAASGDVNIILGTSIN EDLGDEIRVTVIATGIDESKKDRKPHRQTRQAVQPMQQTTQSVEMDQPKSQEEASAFGDW DIRREQNTRPKVDESSLEQVDKKEFDTFHREEPNHNDDELSTPPFFRRKR >gi|307679315|gb|GL456412.1| GENE 56 62657 - 63979 1578 440 aa, chain - ## HITS:1 COG:L0207 KEGG:ns NR:ns ## COG: L0207 COG0849 # Protein_GI_number: 15673852 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell division # Organism: Lactococcus lactis # 1 440 1 456 456 442 50.0 1e-124 MAKTGMYVGLDIGTTSVKVVVAEYIEGQMNIIGVGNAKSDGLNRGIVVDIDQTVQAIQRA VRQAEEKAGIQIKSVNVGLPANLLEVESCQGMIAVSSESKEITDEDVRNVASAALVRSTP PERQIVAILPQDFTVDGFEGIKDPRGMLGVRMEMFGVVYTGPKTIIHNIRKCVEKAGLGI NELVITPLALTETILTDGEKDFGTIVIDMGGGQTTTSVIHDKQLKFTHVNQEGGEFITKD ISIVLNTSFNNAEALKINYGDAYPERTSANEEFPVDVIGKSEPVRVDERYLSEIIEARVE QILRKSKEVLDEIDAFELPGGVVLTGGAASMPGIVDLAQEIFEANVKLYVPNHMGLRNPV FANVISIVEYSAQLNDIYHIAKYAIPGEKSKPAQSVAVQQEVRYDTYAEQPQEEYEEFNE RESGEKVTGKIKDFFSNIFD >gi|307679315|gb|GL456412.1| GENE 57 64153 - 65277 1021 374 aa, chain - ## HITS:1 COG:lin2140 KEGG:ns NR:ns ## COG: lin2140 COG1589 # Protein_GI_number: 16801206 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division septal protein # Organism: Listeria innocua # 87 327 12 252 270 150 35.0 4e-36 MWKISNENDIFKKRKPLPPKKSEESQPELTPWQKQNQEYLKKQAEEAALKGENEQAEVTI TLQEQSQEEPQQHLPQETVEEEEHFADRLPNVKKTRNKRLYRRLAFILTCLGTAILVALY FVSPLSRLSEVTVSGNKSVESQAIIQQSKLETGSGLWEQYSNRNYFSANIQKKFPIIKKA NIKLNGINSFKIDIQEYQIVALAATKGGYHPILENGKTLAETTKAAESGKPIFENFKEDK LIPELMASYNKLPQEIKQGISEIKYAPSKTNKDLINVYMNDGNRVIVNISDLSEKMAYYS QVAEQMDKPGIVDMEVGIFSYPYEKESEETGSEVSEDSAVENQEVVDPNAGAATDEANNG TPTNGENQEVQQAE >gi|307679315|gb|GL456412.1| GENE 58 65286 - 66377 1115 363 aa, chain - ## HITS:1 COG:BH2565 KEGG:ns NR:ns ## COG: BH2565 COG0707 # Protein_GI_number: 15615128 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Bacillus halodurans # 1 360 1 359 363 385 53.0 1e-107 MKILVTGGGTGGHIYPALSFVEHVKKEAPATEFLYVGTENGLESQIVPKAKIPFKTIKIQ GFKRSLSPQNFKTIYLFLTSINKAKKIIREFQPDVVIGTGGYVSGAVVYAAHQLKIPTII HEQNSIPGMTNKFLSRYVDKIAICFPDVASFFPKEKTILTGNPRGQEVVTVEKSAILSEF GLDPAKKTVVLFGGSRGALKINQAFEQAFPLFEEREYQVLYASGERYYQELQESLKLSEK KLTNISVQPYIDKMVEVMANTDLMVGRAGATSIAEFTALGLPAILIPSPYVTNDHQTKNA QSLVKVGAVEMIPDAELTGARLVAAIDDILLNNEKRQQMATASKGEGIPDASDRLYQVVK TLV >gi|307679315|gb|GL456412.1| GENE 59 66382 - 67752 1387 456 aa, chain - ## HITS:1 COG:SPy1525 KEGG:ns NR:ns ## COG: SPy1525 COG0771 # Protein_GI_number: 15675424 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase # Organism: Streptococcus pyogenes M1 GAS # 1 452 1 449 452 538 61.0 1e-153 MKKITTYQNKKVLVLGLAKSGVSAAKLLHELGALVTVNDAKQFDQNPDAQDLLTLGIRVV TGGHPIELLDEEFELIVKNPGIPYTNPLVAEALTRKIPIITEVELAGQIAECPIVGITGT NGKTTTTTMIGLLLNADRTAGEARLAGNIGFPASTVAQEATAKDDLVMELSSFQLMGIET FHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTVEDTLILNWNQVELQTLAKTTAA NVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADELGIPGSHNIENALAAICVAKLKNVSNA QIRQTLTNFSGVPHRTQFVGEVQQRRFYNDSKATNILATEMALSGFDNQKLLLLAGGLDR GNSFDELVPALLGLKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSEKDD TILLSPACASWDQYPNFEVRGEAFMQAVQQLKESEM >gi|307679315|gb|GL456412.1| GENE 60 67775 - 68740 1024 321 aa, chain - ## HITS:1 COG:SP0337 KEGG:ns NR:ns ## COG: SP0337 COG0472 # Protein_GI_number: 15900268 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Streptococcus pneumoniae TIGR4 # 11 321 9 324 326 295 55.0 5e-80 MEWTQIFIPIVVSFAITVSVMPLFIGYFQMKKQGQVTREDGPTWHSVKTGTPTMGGVVFL VASLITSLAMGLFFHQFTPSLLIILFILVLYGLLGYLDDFIKVFKKRNMGLNSRQKLIGQ IFGGLVFYFVYRSEGFSDTLDLFGVAEVPLGIFYGVFIIFWLVGFSNAVNLTDGIDGLVA GLGTISFGTYAIIAWKQQQFDVVIICLSVIGGLIGFFPYNRKPAKTFMGDVGSLALGGLL AAISIILHQEWTLLLIGLVYVCETASVILQVASFKLFGRRIFKMSPIHHHFEMCGWSEWK IDFVFWSVGLICSGITLWILF >gi|307679315|gb|GL456412.1| GENE 61 68768 - 70996 2684 742 aa, chain - ## HITS:1 COG:SP0336 KEGG:ns NR:ns ## COG: SP0336 COG0768 # Protein_GI_number: 15900267 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Streptococcus pneumoniae TIGR4 # 9 738 9 748 750 498 38.0 1e-140 MSKRHKFKQFMKKKNLNPMNNRKKVGIILFATSIGLFFLFAFRTTYIVATGKVAGVSLKE KTASLYEGSQVVKAKRGSILDRYGNPIAEDATSYSLYVVLSKKYTGQNNEKLYAEKKDFD DIAEILAKYTKLDKKTALKYLNNGIHEDGSTQYQVEFGAGGQNITLETRQKIEADLKKKK ISGVYFNEHPARLYPNGQFASHFIGYTKAANPDDDKEGLVGAMGLEQTYNDILSGTDGRV YFEKDIYGNALPGTVAEEKKAVDGQDIYTTLDSRLQNTLEDLMTQVNEKYEPVSMTAMLM EAKTGEIVAMSQRPTFNPETKQGLDDNGTWQNLLVESPYEPGSTIKLFTTAASMEQGQFN PNELFNRVGGIQVGDVTVNDHDYTRLNGKEYLNYRQAISWSSNIGMVKLEQKMGDEKWME YLKKFGFGTSTHSGLSGESAGKLPGTNFVDRAMSAFGQAITVTNFQMMKGFSAIANDGSM LQPHYISKIVDKNTGKETITEPQIVGTPIKAQTAQQIRTYMIDTVEDPTYGIAYDIYKVP GYHVAAKTGTAQISDGKGYVDGASQVLSSVVEMVPADNPEYVLYITLRQAKSGSPSEAMA AIANPLMKLALDIKETDPETTKVASDKVTVADYKNMTPAEALANAKVNGVDPVIIGDGEK IKKQSTPSGQTLMPNQKLILITNGTNYMPDLTGWSKSDVTKFGDLLGLTVEFKGEGYVTK QSIAAETEITEKKLTVTLEGTE >gi|307679315|gb|GL456412.1| GENE 62 70996 - 71403 506 135 aa, chain - ## HITS:1 COG:no KEGG:EF0990 NR:ns ## KEGG: EF0990 # Name: not_defined # Def: cell division protein # Organism: E.faecalis # Pathway: not_defined # 1 135 1 135 135 206 99.0 3e-52 MAELKKVNDFHYEAPEMDQPTVATEQDRKMQEETLPVPALLPKKKLKNVSLLEKLIGVVL VCATIGIAIATIQVRTTIVQTMNDITETQAVIKEKEDNALKLEQERSELSKSDRIKDVAK KQGLENNGDNVRTVK >gi|307679315|gb|GL456412.1| GENE 63 71420 - 72376 1081 318 aa, chain - ## HITS:1 COG:lin2147 KEGG:ns NR:ns ## COG: lin2147 COG0275 # Protein_GI_number: 16801213 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis # Organism: Listeria innocua # 5 315 2 310 312 442 72.0 1e-124 MTEEFRHYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKA LAHAKTRLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGF SYHQDAPLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQP IETTGELVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNG RISVITFHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSE NNRSRSAKLRIAEKIKSS >gi|307679315|gb|GL456412.1| GENE 64 72391 - 72873 437 160 aa, chain - ## HITS:1 COG:BS_yllB KEGG:ns NR:ns ## COG: BS_yllB COG2001 # Protein_GI_number: 16078577 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 18 158 1 141 143 206 65.0 1e-53 MGCGRLVLSSGKAGVLAMLMGEYQHNIDAKGRLIVPSKFREELGEKFVVTRGMDGCLFGY PLNEWSQLEAKLQEMPLAKKDARTFVRFFYSAATECEIDKQGRINIPANLRTHASLEKGC VVIGVSNRIEIWSDERWHAFSDEAEENFDELAETMIDFGF >gi|307679315|gb|GL456412.1| GENE 65 73111 - 73482 119 123 aa, chain - ## HITS:1 COG:no KEGG:EF0987 NR:ns ## KEGG: EF0987 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 123 8 130 130 169 99.0 3e-41 MVSFSAIMLFWFIFPVIVLFACNFLVSTFSLTERWKIKAPDLAIPFLFIGIHELSKDSYD ESIMPYFVISILLLGVAVALFQAYYYGEILYRRYFKMFWRLTFLLTFVLYVLLILLNISH YLL >gi|307679315|gb|GL456412.1| GENE 66 73757 - 74713 915 318 aa, chain + ## HITS:1 COG:lin0651 KEGG:ns NR:ns ## COG: lin0651 COG0598 # Protein_GI_number: 16799726 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Listeria innocua # 1 294 1 292 316 182 36.0 6e-46 MINYLLLKNDYFEPCSPDDEALSWISVESPTEEEIERLVNQYHLPTDYLTGVLDDEENAR VEGFRHEKLQTPTLLLFRYPKASISPSGYLQVETVPIALIATVDNKLITVSNGPNDIVHG IQKEAFTHQDLSIEKALILALSWKMALSFNKNLQALIQQTNKLEGELQVATENSQLYQIM DIQKSLVYFEAALTDNLKVLKRLYSAEIFNHPEKHLPFLRDILIELEQGLNTTKIQLKLV DNISNTFSAIVSNNLNNVMKILTSLTIVLTIPTIIGGIYGMNVKLPFAEHEYSFWIIFAI TTLICVISIRILKKKNLL >gi|307679315|gb|GL456412.1| GENE 67 74781 - 74891 194 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNDKEQSRFSKITKVVVWLMLIAIVGSTVLTAILSL >gi|307679315|gb|GL456412.1| GENE 68 74982 - 76655 2172 557 aa, chain - ## HITS:1 COG:lin1405 KEGG:ns NR:ns ## COG: lin1405 COG0497 # Protein_GI_number: 16800473 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Listeria innocua # 1 557 1 558 563 484 49.0 1e-136 MLQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRGSSDYIRQGAN KCTLEGLFSMPKSQELKQLLEELGIETEEDSLVIQRDISASGKNVCRVNGRIVNITNLKR IGEYLVDIHGQNEHQELMQSERHIDMLDEFGGKKLLAVKEKYTRAYQEYRALEAKVRKRQ KNEKEFAQRMDMLHFQSDEIASAQLVAGEEEQLLEERNKLNNFQKIADALTISYAALNGE DDSSLDKIGTSMNELASIESLDPEYKSLSDTVQNAYYLLQEASGDLSRLIDGLELDEGRL NEVENRLELIRQMKRKYGDSIETILSYYEEITKELAEADFLEGGTGDLEALLAEKQQAAH QQALALRKERKRLAKELEQQILTELKELYLERTEFEVRFTELEHLQENGLDGVEFYITTN PGEPLKPLVRVASGGELSRVMLAMKTIFSQTQGITSIVFDEVDTGVSGRVAQAIADKIYQ ISENSQVLCITHLPQVAAVADEHYFIEKEIVAGRTETSVRVLSEKERVNEIARMLAGSEI TKLTIEHAQELLAMAKK >gi|307679315|gb|GL456412.1| GENE 69 76673 - 77122 513 149 aa, chain - ## HITS:1 COG:BS_ahrC KEGG:ns NR:ns ## COG: BS_ahrC COG1438 # Protein_GI_number: 16079481 # Func_class: K Transcription # Function: Arginine repressor # Organism: Bacillus subtilis # 1 149 1 149 149 117 40.0 8e-27 MRKQDRHRLITRLLTEKNIQKQEDFVNYLQEKGVAVTQATISRDIKDMKLIKVPSAEGGY RYSLPLETQANTSAKLAKLLKDAFVAAEQMEKYVVLRTIPGNAAACGSLIEKNYQEKLFA VINDDDSVLMITRTEEAAEKLHKELLSYL >gi|307679315|gb|GL456412.1| GENE 70 77261 - 78076 855 271 aa, chain - ## HITS:1 COG:lin1403 KEGG:ns NR:ns ## COG: lin1403 COG1189 # Protein_GI_number: 16800471 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase # Organism: Listeria innocua # 1 269 3 272 274 350 66.0 1e-96 MKKERVDVLAFNQGLFETREKAKRSVMAGLVYNDKNERLDKPGEKISVETPLHTKGQVMP YVSRGGLKLEKALNVFAINVQGKTMLDIGSSTGGFTDVALQNGARLSYALDVGYNQLAWK IRQDERVVVMERTNFRYSKPEDFTKGVPDIATIDVSFISLRLILPPLHDILKKGGSVVAL IKPQFEAGKEFVGKKGIVRDPETHQMVVEEITRFAMNNGYDVKNLDYSPITGGEGNIEFL AHLVSVEGEGSYQATESIEEVVAHAHQKLAE >gi|307679315|gb|GL456412.1| GENE 71 78090 - 78971 1130 293 aa, chain - ## HITS:1 COG:BS_yqiD KEGG:ns NR:ns ## COG: BS_yqiD COG0142 # Protein_GI_number: 16079484 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Bacillus subtilis # 1 265 1 271 272 221 50.0 1e-57 MTNFSQQHLPLVEKVMVDFIAEYTENERLKEAMLYSIHAGGKRLRPLLVLTTVAAFQKEM ETQDYQVAASLEMIHTYSLIHDDLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAF QLLSLSQLGLSEKVLLMQQLAKAAGNQGMVAGQMGDIEGEKVSLTLEELAAVHEKKTGAL IEFALIAGGILANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALN KSTYPALLGIAGAKDALTHQLAEGSAVLEKIKANVPNFSEEHLANLLTQLQLR >gi|307679315|gb|GL456412.1| GENE 72 78971 - 79201 475 76 aa, chain - ## HITS:1 COG:no KEGG:EF0980 NR:ns ## KEGG: EF0980 # Name: xseB # Def: exodeoxyribonuclease VII, small subunit # Organism: E.faecalis # Pathway: Mismatch repair [PATH:efa03430] # 1 65 1 65 76 79 98.0 4e-14 MPAKEKTFEESLNALEEIVQRLERGDVPLEEALVAFQEGMALSKQCQDTLEKAEKTLTKM MTENNKEIVFEESEEA >gi|307679315|gb|GL456412.1| GENE 73 79203 - 80549 1532 448 aa, chain - ## HITS:1 COG:L0254 KEGG:ns NR:ns ## COG: L0254 COG1570 # Protein_GI_number: 15672836 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII, large subunit # Organism: Lactococcus lactis # 4 439 3 417 417 379 50.0 1e-105 MTQQYLTVTALTKYLKRKFDADPYLGRVYLTGEISNFRFRANAHQYFSLKDDHAKISAIM FKSAFQKLKFQPKEGMKVMVVGRISLYENSGSYQIYIEHMEPDGVGALYQALAELREKLG KEGLFEGPEQQLPRYPKRIAVVTSPSGAVIRDIITTVKRRYPIAQLVLFPTLVQGEQAAD DIVRNIQRADAQGDFDTMIIGRGGGSIEDLWPFNEEKVARAIHAATTPIISSVGHETDVT IADMVADVRAATPTAAAELAVPVLNEELLRISERRSRLEQSFLYLLQQRTERFQRLQNSY VFKQPERLYEGQTIKLDRMTQRLFQAMTTIHHQKQRQAQGIIAQLQQQTPKGQLRESQQQ LAFLQRNLQTQMTQLFLNKQKQFTSAVQQLDLLSPLKIMGRGYSYTTKEDRVVKTVTELQ PADQLTIHYADGTVQANVETITAKKEEF >gi|307679315|gb|GL456412.1| GENE 74 80559 - 81404 1110 281 aa, chain - ## HITS:1 COG:SP0825 KEGG:ns NR:ns ## COG: SP0825 COG0190 # Protein_GI_number: 15900713 # Func_class: H Coenzyme transport and metabolism # Function: 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase # Organism: Streptococcus pneumoniae TIGR4 # 1 277 1 278 285 363 66.0 1e-100 MSTVINGRELADQMQAEIQKDVEKMTQQGIQPGLVVLLVGENPASQTYVRNKERAAAKIG ILSKVEKLPETISEEELLAEIDKYNQDSRFHGILVQLPLPKHIDEEKILLAIDPKKDVDG FHPMNLGRLFVGKPEMIPCTPYGIMKMFEAYDIDLTGKRAVVIGRSNIVGKPMAQLLLMK NATVTIAHSKTEHLAEVAKEADILVVAIGRGHFVTKEFVKPGAVVIDVGMNRNQEGKLIG DVAFDEVSEIASYITPVPKGVGPMTITMLMYQTVEAAKKQK >gi|307679315|gb|GL456412.1| GENE 75 81508 - 81960 648 150 aa, chain - ## HITS:1 COG:SPy1818 KEGG:ns NR:ns ## COG: SPy1818 COG0781 # Protein_GI_number: 15675648 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Streptococcus pyogenes M1 GAS # 7 140 8 138 150 105 44.0 2e-23 MSKTELTRHEIREKALQALFPLDFNADLTKQDAIDYALAYDNREIVSEDGEDLVPTYLDL LVGGVCSRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVPNIVALNEAV ELSKKYSDDRSRKFVNGVLSNVMKEIDSEA >gi|307679315|gb|GL456412.1| GENE 76 81953 - 82384 728 143 aa, chain - ## HITS:1 COG:SP0434 KEGG:ns NR:ns ## COG: SP0434 COG1302 # Protein_GI_number: 15900352 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 13 136 5 125 129 114 50.0 8e-26 MSEEKNLVINANDSLGEIVIAPEVIEVIIGIAASKVEGVYGMRGTFANNVNELLGRAAHG KGVYLRTEEEGLKVDIYCYLNYGVSVPKVALEMQDRVKQQVLFMTDIDLVEVNIHVVAVV PEKIPQPDLNELFPEDEDGEENE >gi|307679315|gb|GL456412.1| GENE 77 82717 - 83037 458 106 aa, chain - ## HITS:1 COG:BS_yvdC KEGG:ns NR:ns ## COG: BS_yvdC COG1694 # Protein_GI_number: 16080518 # Func_class: R General function prediction only # Function: Predicted pyrophosphatase # Organism: Bacillus subtilis # 1 103 1 103 106 99 48.0 1e-21 MDIQEYQRFISAFYKKRNWYQYDPFIRSNFLTEEVGEVCRAIRTIEIGRDRPDETVLADE ENLENLTEELGDVLDNLFILADKYDISLEMIMQKHRTKLMERYPEE >gi|307679315|gb|GL456412.1| GENE 78 83051 - 84115 1467 354 aa, chain - ## HITS:1 COG:lin1391 KEGG:ns NR:ns ## COG: lin1391 COG0006 # Protein_GI_number: 16800459 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Listeria innocua # 2 354 1 353 353 428 58.0 1e-120 MMARVEKLRELMKENNLQGFLVTSPYNLRYLTNFTGTTGLAMITLDKAFFVTDFRYTEQA AEQATGFTIVKNTGHIFDEVADLAERLQLDNLAFEETQVSFADYSLLEEILPCELVPVMG LIEELREVKDEEEVAIIEKACAIADQGFAFVLEMIKPGMTEIEVANQLDFFMRSKGASGV SFETIVASGLRSAMPHGVASHKVIEKGELITLDFGCYYEGYVSDMTRTFAIGSIQTKLKE IYDIVLEAQLKVLAEAKPGLTGIQLDAIARDHIASYGYGDAFGHSTGHGIGLEIHEGPNV SFRADKQFVPGNVITDEPGIYLPGIGGVRIEDDLLITAEGNRVLTHAPKELIIL >gi|307679315|gb|GL456412.1| GENE 79 84287 - 85102 798 271 aa, chain + ## HITS:1 COG:L42411 KEGG:ns NR:ns ## COG: L42411 COG1408 # Protein_GI_number: 15673582 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Lactococcus lactis # 5 267 10 276 278 186 38.0 5e-47 MNVYLFLALFFIIIGILSYSFFIEPNCLVIHKNQIKVTESGKTLRIVQLSDIHLKKNYSV KALKQIVEKTNILQPDIVVFTGDLFDDYARFGIEIQDEVSQLFRKINAPYGKFAIYGNHE YSGLDTNFYETILEAADFTVLKNTGKLLPVSHRISLYVAGLEDSLYGQTDLAAALVNRPT GTPTLLLTHEPDVADSAVNKNIDLILAGHSHGGQIRLPFFTYKNQLAKKYTHGLYHLEDE TPLIVHPGIGTTKISARFGVLPTIELIELTI >gi|307679315|gb|GL456412.1| GENE 80 85173 - 85586 443 137 aa, chain - ## HITS:1 COG:YPO3717 KEGG:ns NR:ns ## COG: YPO3717 COG3223 # Protein_GI_number: 16123855 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Yersinia pestis # 2 111 17 126 135 65 35.0 3e-11 MILDIVLGILGVFLLVFMASYLVDLATYLMKPMTPDNFSVIMQEIISFFMLFEFIMMILR YIQEGHHIPIRYLILICLTAILRQLMVAHGDGLQTLLLSLSILLLVVVLFILGLNGSKFY TLGKAKVEEDHEQDFHH >gi|307679315|gb|GL456412.1| GENE 81 86189 - 86764 434 191 aa, chain + ## HITS:1 COG:no KEGG:CLL_A1479 NR:ns ## KEGG: CLL_A1479 # Name: not_defined # Def: hypothetical protein # Organism: C.botulinum_B_Eklund # Pathway: not_defined # 23 191 89 260 260 101 37.0 1e-20 MGLFKHKKKDDIEFTETSSYGPIKIDEARKLFKYKSEIFNYTDLISFELIEDGNQVTHGG ISLGRAALGGILFGTSGAAITGASKIKKEDKDYCSQLDIMIHVKNSPKPTKFIKLITFKI DKSKFMYKQMANTAKEILGGLNYILDNIETQTSSDTAIDQFDNLKKLKELLDMGILSQEE FDKKKQKLLDL >gi|307679315|gb|GL456412.1| GENE 82 87029 - 87514 448 161 aa, chain - ## HITS:1 COG:no KEGG:EF_B0061 NR:ns ## KEGG: EF_B0061 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 2 157 1 161 168 209 71.0 4e-53 MVRRTKKEFKPYNDYVDRPFELKWPTAFPLGELTEAIKSTDEYHARNIERLPQQSQRQIE YFLDRSIKQNKVLEIQLNSLDEYDRVKPHVFGVFRGMAEFDVVLIGEQEIDFYDIRNIQI HNFTKWSEEHILEENPFEEETEHCETIDEFVDEYFDDEWIE >gi|307679315|gb|GL456412.1| GENE 83 87729 - 88115 387 128 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|307290069|ref|ZP_07569993.1| ## NR: gi|307290069|ref|ZP_07569993.1| hypothetical protein HMPREF9509_00379 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9509_00379 [Enterococcus faecalis TX0411] # 20 128 1 109 109 179 99.0 6e-44 MGKIKFKRINSGIESLQFGLAEIEESISVNGQFKLEVNKEESKLLKLDAHVELYKDKSED SFMQLNFYGIYETDNNDPNLTLVDIDNSTDLLKDIVPELNRVLTFITKEGLGSSLELPEN FSEIHKES >gi|307679315|gb|GL456412.1| GENE 84 88028 - 88726 347 232 aa, chain - ## HITS:1 COG:no KEGG:LSL_1843 NR:ns ## KEGG: LSL_1843 # Name: not_defined # Def: hypothetical protein # Organism: L.salivarius # Pathway: not_defined # 1 210 1 209 221 138 41.0 2e-31 MSKIIEKFSYETNQNERYEVIFLEEDVTIKNDTFKVKHEYYKRISDDELFEPFSNPDQNL EKDYNIYRERHNLLSAKKVKEIREKYELTIRDFSVLLGISYSNLSSIENGSIQANYIDSL IRLADDPYAFYKCIVKIKGKKVLKEKVYNRLEKLLEDLILNSYSEHQQIAQKVYGCQLDL RNNIIRIANVMEFETENRIKGELKWEKSNSNESIVESNLFSLAWPKSKRVYQ >gi|307679315|gb|GL456412.1| GENE 85 88728 - 89114 267 128 aa, chain - ## HITS:1 COG:no KEGG:LSL_1844 NR:ns ## KEGG: LSL_1844 # Name: not_defined # Def: hypothetical protein # Organism: L.salivarius # Pathway: not_defined # 5 117 2 118 127 68 33.0 6e-11 MSSEELFTKVNLFLTTFKECVSDGHVSFSEVNAKTTRFLRAYGITVAAMHNFIIENIEEK HYFRGPSEHHRASNRTVTEFGLVWDEIKVYVKLELIAQENNFVAAYMSFHPREQEIDCFP LDYKGEVI >gi|307679315|gb|GL456412.1| GENE 86 89473 - 90774 1464 433 aa, chain - ## HITS:1 COG:SPy1006 KEGG:ns NR:ns ## COG: SPy1006 COG3757 # Protein_GI_number: 15675010 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Streptococcus pyogenes M1 GAS # 91 252 214 358 444 126 42.0 9e-29 MKKKILAGALVALFFMPTAVFAAKGDQGVDWAIYQGEQGRFGYAHDKFAIAQIGGYNASG IYEQYTYKTQVASAIAQGKRAHTYIWYDTWGNMDIAKTTMDYFLPRIQTPKNSIVALDFE HGALASVPDGYGGYVSSDAEKAANTETILYGMRRIKQAGYTPMYYSYKPFTLNHVNYQQI IKEFPNSLWIAAYPIDGVSPYPLYAYFPSMNGIGIWQFTSAYIAGGLDGNVDLTGITDSG YTETNKPETDTPAIDAGEEIEKTPNSDVKVGDTVKVKFNVDAWATGEAIPQWVKGNSYKV QEVTESRVLLEGILSWISKGDIELLPDSTTVPDKQPEATHVVQYGETLSSIAYQYGTDYQ TLASLNGLANPNLIYPGQVLKVNGSVVSNVYTVQYGDNLSSIAAKLGTTYQALAQRNGLV NPNLIYPGQTLNY >gi|307679315|gb|GL456412.1| GENE 87 90771 - 91007 408 78 aa, chain - ## HITS:1 COG:lin1702 KEGG:ns NR:ns ## COG: lin1702 COG5546 # Protein_GI_number: 16800770 # Func_class: S Function unknown # Function: Small integral membrane protein # Organism: Listeria innocua # 2 74 3 75 86 60 46.0 6e-10 MIDWKSRIKNKQFWLSLIPAVLLVIQVVAVPFGYKFQIDVINQQLLDVVNAVFVVLTILG IVTDHTTPGLSDKKETNK >gi|307679315|gb|GL456412.1| GENE 88 91000 - 91221 263 73 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|281416274|ref|YP_003347623.1| ## NR: gi|281416274|ref|YP_003347623.1| hypothetical protein [Enterococcus phage phiFL3A] hypothetical protein HMPREF9509_00384 [Enterococcus faecalis TX0411] conserved hypothetical protein [Enterococcus phage phiFL3A] conserved hypothetical protein [Enterococcus phage phiFL3B] hypothetical protein HMPREF9509_00384 [Enterococcus faecalis TX0411] # 1 73 1 73 73 134 100.0 3e-30 MNLTLEQWLAVITFLSGIIFALMKFYHVFSQLEDSMKELKQAVDRLNNHEVRISRLEEQN KTLFRGIGGNKND >gi|307679315|gb|GL456412.1| GENE 89 91301 - 92323 1074 340 aa, chain - ## HITS:1 COG:no KEGG:EF1481 NR:ns ## KEGG: EF1481 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 43 339 181 461 547 400 66.0 1e-110 MSYEKQHWQTYDELKTEEENKALGAVVTSERMNHVEDGIAISHENIDSHTKQFDNPHKVT SEQVGAYTKEESNKKFAALGSSYTKKESEDLFIEQAEAENGLFVRKNSKILDLNDAVDPG IYSIPATGVENKPLPNSGSLIVNKDSGGVRQLFQTERTVVIRQFGGIPSTWTDWKEVAFA PNVVNLTEPQRIGGIKEFSEIPLVNGKEVALKDETFIYKKAGLDEVEAAYRSAFGAETNI LLVRKGNKVDAYLRVNVVDVEKLKPNMVQIFKIPKGFMIDQEMRAGYWNTALTTVQYTYP QGNYGALYEEGVKGIRFGSDRKGNHYVCGSWYTADAFPET >gi|307679315|gb|GL456412.1| GENE 90 92335 - 92463 248 42 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPIKEMEISSEQVIDQLLKKITELEYENAALKAVLSNKDSND >gi|307679315|gb|GL456412.1| GENE 91 92483 - 94900 1811 805 aa, chain - ## HITS:1 COG:no KEGG:llmg_0846 NR:ns ## KEGG: llmg_0846 # Name: ps352 # Def: hypothetical protein # Organism: L.lactis_MG1363 # Pathway: not_defined # 1 801 1 822 845 811 52.0 0 MLKVSERFLEKIKSMDRNIVTRITAKNKVYTGNDVNYLKLDYGAMVGDSLQIGSTYSNSL EIEFCSVITEFEEMDEIVIELGVVIHDAESDISSVKPAKVGSAKIGSAKLVGYKPTEYEY VNMGTFYITESDPDRNEKKTTIKALDSFVYMEGMYKSELPEMETIRNIAIDIANKAGIKV DLSSFNGLSTVRIKTPKNCTYRQAIGMIAQFECGYAHFNRDGLLTIRNLTDPRFQITPSE YFMKGLKKNELMYKLGGISCEVRSDEEGSSETILLKAGSDKGAQIKLSNNSMTQTLLDDM YVKLRNLNFYPYNLSWRGNPALEVGDWITFTDREGNKFKSPNLSYSLEYRGGLKGTSSAD TKAISSQTTQFKGPIQQQLDDLYSRVDAAGKNNVYDGTDEPKNPKEGDLWFKPNGPDTEI WIYRDGKWVMQTSTALDEDIKEKIENSTPSDEIVKTINLSQEMDGKEWLKITGAKIWLTD QTKIDDAIITHGMIGSVDAGTIKVGTLDAGKIRVVNLDASAISTGTLTAINIEGVRIKSA TITSIGQDFTMIEDNGSITWKRNSDQKEIFKFYTTLINQKEGNVRLEVSDEGSFTIFNKK LNKAFLSFFGATNNMSGTANLDNFYVVGSGHSLNFAPGSFGYSSTASKSPSLNVSSSGFS IGNNDTKVLGSSGGRISISATSTSVTGNLSVTGSKNSLVDTENYGQRLLNAYETPEYYFA DYGKSVTGSDGQVKIEIESIFLETIFTNNENYHVMLSPYGEGSIWVEEIKSTYFIVKSDK PEIPFSWNIIAYRKNYEDVRLNQPQ >gi|307679315|gb|GL456412.1| GENE 92 94917 - 95282 221 121 aa, chain - ## HITS:1 COG:no KEGG:LACR_2093 NR:ns ## KEGG: LACR_2093 # Name: not_defined # Def: hypothetical protein # Organism: L.lactis_SK11 # Pathway: not_defined # 1 121 1 121 121 164 67.0 9e-40 MSGMLKINGQTVRYPKEYSVGIQAIDADSSGRNANGEMVRDVIAEKIKLTMKWGPLSDSE VSSILQAVKSNFFQVEYPDPLIGRQRVKTFYVGDRSAPSYSWNGKFEELKWEGLEMNFIE Q >gi|307679315|gb|GL456412.1| GENE 93 95293 - 99828 3010 1511 aa, chain - ## HITS:1 COG:L25762_2 KEGG:ns NR:ns ## COG: L25762_2 COG3953 # Protein_GI_number: 15673370 # Func_class: R General function prediction only # Function: SLT domain proteins # Organism: Lactococcus lactis # 1294 1461 4 158 203 122 46.0 4e-27 MAIELETLEVLLDVNLSKIDAAMEKVWPKFDSMLKKIEGTSKDSMDKTEKNLNIDKGVQA FSKQLDELSKNVERMTNTISKNTKDASSNIGNNFASGIRKAKPKVSKEVDALVNEINAKM GQAKAAQEKVAYLKSQRQDASAKGDTGKTIKYDEQIARAQANMTKFHDQAKGLAKGIKSE FDSVPSSLDNIVKKMALNEIQIEAMRKKIKGLKSTYEDQRIPKGTFQNGFKEFKDTPASD KTAEAIQKQSVKMNKLINDNDRLQKEYAKTEDRANSLRKALARINTALGSSSIRTGDAVD GATKTGAGMKQSERAVSRYGGVFNRMQNALSHGSRGLGNGFKDSLGFVSKFGSIFSLTSN KVNRGTQGMSRRTGQLGQSMRGLLPSLIVYQLIGRAISGLAKNLFAAFRTNEQFSNSLNQ IKVNLMTAFYPIYTAILPAVNTLMNALATLTGQFAAFIASIFGTTYQAAKTGASGLYDDI QALEDTGDAAEKTKEKVKKLERVLMGFDEINKLSLNNDKEDGSSLDKPNKPSTDFGAATG DYQPPAWMKNFKNLLKDFFKPFQDAWNNQGKKVIDAWNYALKEVIGLAKAIGKSFMEVWT NGTGQRFIENLLILLADVLNIIGDIAGAFRRAWEDDGRGTALIQSIFDMWNSILELLHSV ATAFRDAWNDGTGESIAANILEIYTNIFKTIGNIADQLKKAWESNNTGREIFSIILGIID DILSHINGITKATADWAKTLDFTPLLSSVKNLLKSIRPLADKVGEGLEWFYKNVLLPLAS YTIQDLIPAFLDTLKGVIDLLSGVIDAFKPAFDYFWNNVLKPLAEWTGGIVVDVLKSLGD VLSTIGQWLSEHAEGFSNFVIAFGTFVGAIKVIGAAVKVVEVLSGIFTFLSSIGGLSGVL SAVGTAIGTVVGILGGPITVAIGAAIAAGVLLWKNWDTVKEKAGQLGKWINEKWNGIKSS TSEAWDSVKKWSSEKWEDTKKSVSDKVSTIKTNVSDKWSEIKRGTSDTWENVKSTVSDKA NTAKNNAVSAWSNMKEKMGSYSSTIKSNAKNAFDSVASWASGMGEKIGSGLSRGVNAVKR GAAAIGNGIVSVIGGAVNGVINGINWVLGAVGSSNRLTAWEVPRYAKGTNGHPGGYAMVN DAAGSRYQEMFMLPDGRAGLFPKQRNLLVNLPKGSQVIPGNQIPNYAKGTSGWLDNLQDL ASNIWDYATNPKKVLDAAVSKFTDLSGVFEPALSIAKGGISKMTEGAVGFVKKFFDEGSE SPKGTGVERWRPVIKKALSMNGLPSNETYTGAWLRQVQSESGGNEKAVQGGYVDVNTISG DLAKGLLQTISATFNAYKFPGHGNIFNGFDNSLAAINYAKNRYGVTGMLQVIGHGHGYAK GTPWVPEDQLAMIHKGEMVVPAGANPFNPDNQFKDFKNLRMPDQLYSSQSTINNTDFNNS SPNNVNSYGISKLENSLVNAIMSLVSSLGASASQNRDGDIIINIGGEEFARIAISKINEY NRKIGYNALEI >gi|307679315|gb|GL456412.1| GENE 94 99838 - 100197 274 119 aa, chain - ## HITS:1 COG:no KEGG:LACR_2095 NR:ns ## KEGG: LACR_2095 # Name: not_defined # Def: hypothetical protein # Organism: L.lactis_SK11 # Pathway: not_defined # 1 114 5 118 123 121 60.0 1e-26 MYPQAVEAGIPASEYWLMTFDELMVQIQANKKCKENELREKAMFDYSQQKLAVYAFNDPK KFPKFEEVYPFLKDVEQVVNQGIKEYNTQEDSMYRDQDILMKNAKAIKETRKRKMIEER >gi|307679315|gb|GL456412.1| GENE 95 100230 - 100640 516 136 aa, chain - ## HITS:1 COG:no KEGG:LACR_2096 NR:ns ## KEGG: LACR_2096 # Name: not_defined # Def: hypothetical protein # Organism: L.lactis_SK11 # Pathway: not_defined # 1 136 1 136 136 159 64.0 3e-38 MSKNNLVAMPLTKEFEFGDLTLQLRLDGKSILNIEKRLDEGIMGLFVKKQGELKLPPANS LLIILQGANKTSGVTDKVMVDAFEKYIDSGKTTMDLFAEINDFLDESGFFGKKKTEKEET NGESLDQEVTEEESML >gi|307679315|gb|GL456412.1| GENE 96 100697 - 101155 601 152 aa, chain - ## HITS:1 COG:no KEGG:llmg_0841 NR:ns ## KEGG: llmg_0841 # Name: ps347 # Def: major tail protein # Organism: L.lactis_MG1363 # Pathway: not_defined # 17 147 6 136 137 182 70.0 3e-45 MKKLDLQLFAGEPAFEGLLSKGTKLSYKDGATSKDIAAVKSIPALGTDPEKVEVTHLGSE KKAYIKGLQDSESLEFAIVYQGTNFNDIHTMVKSGKSFDFTITYPDGLTATFSGEPDYKF DGAEVNQAIGFNLVVVVSKGPDFTPVTAPTTK >gi|307679315|gb|GL456412.1| GENE 97 101175 - 101537 419 120 aa, chain - ## HITS:1 COG:no KEGG:llmg_0840 NR:ns ## KEGG: llmg_0840 # Name: ps346 # Def: hypothetical protein # Organism: L.lactis_MG1363 # Pathway: not_defined # 1 120 1 120 120 132 57.0 6e-30 MNKIDLKPIVYQLLTQVKEIKKVATDYPSNWTSFPSAIYRTSSQPKEIDSQKKELQTTWM ITIELYGNTSLTALTSLVIEKFNSIGFTGTSKDANTADMHRVIIELTGVVDNVTKYVYKK >gi|307679315|gb|GL456412.1| GENE 98 101534 - 102073 473 179 aa, chain - ## HITS:1 COG:no KEGG:llmg_0839 NR:ns ## KEGG: llmg_0839 # Name: ps345 # Def: hypothetical protein # Organism: L.lactis_MG1363 # Pathway: not_defined # 1 179 3 181 182 239 65.0 3e-62 MGVEIRGLDRLKRKTKKATELISDAAWDATFELTELIQGAAELRLASSIKYGSGELSGSL KNEVVVDASGHLVGRVWSDKEQAIYREFGTGQIGEASSKDIPTGIMPVYSQKPWFIPAEK VAIDLEAMYGIPKITIQGQDFFITKGQPSRPFLYPSLQEMIEQASEIYIKHVKERLREL >gi|307679315|gb|GL456412.1| GENE 99 102073 - 102414 406 113 aa, chain - ## HITS:1 COG:no KEGG:llmg_0838 NR:ns ## KEGG: llmg_0838 # Name: ps344 # Def: hypothetical protein # Organism: L.lactis_MG1363 # Pathway: not_defined # 1 110 1 111 117 108 50.0 6e-23 MRLRKRNLVVAYLKKRHLEKDDEGNDVVTYSSEFNELHMNIQSAGGQVAATIYGQHLPYI KLCKYQGDLLKPNRNEKDGICLYVKPENDPDYEIESIQPFSSHLNITLKKRGV >gi|307679315|gb|GL456412.1| GENE 100 102395 - 102733 309 112 aa, chain - ## HITS:1 COG:no KEGG:llmg_0837 NR:ns ## KEGG: llmg_0837 # Name: ps343 # Def: hypothetical protein # Organism: L.lactis_MG1363 # Pathway: not_defined # 2 112 3 110 110 114 54.0 1e-24 MDKEEVIKHTKALVVRLGIDETESEKIKGMLEDAIVLVLDYTNREKMIDKLYYYARQLVI ITWNQEGNEGETSRSEGGVSQSFITDIPEKLKSGLNNYRIGKVVKYYASKKT >gi|307679315|gb|GL456412.1| GENE 101 102747 - 103784 1326 345 aa, chain - ## HITS:1 COG:no KEGG:CLD_2447 NR:ns ## KEGG: CLD_2447 # Name: not_defined # Def: prophage LambdaCh01, coat protein # Organism: C.botulinum_B1 # Pathway: not_defined # 17 331 3 314 315 367 59.0 1e-100 MKKSLIKMNLQIFAAKTKIEDVIVPEVFNSYVIERTAELSALYQSGIVVKDPELDALATA GGKLINMPFWQDLTGEDEVLSDTDSLETDKITASQDVAALLMRGKAWKVNDLSKALSGDD PMRAIGDLVAAYWARRQQATLLSVLKGVFGAASTKMNENSLDISAETGNDSAFTGETFLD ASYKLGDAEEKLTAIAVHSSVYANLRKQNLIEFLLDSNNTKIPTYMGKRVIVDDGMPVSG DVFTSYIFGQGAIGLGNGAAPVPTETDRDALAGDDILVNRQHFLLHPRGVKFTNKTVTGS SPTNAELATGGNWERVYESKNVRIVQFKHKLWVPKTVIPGGGTGE >gi|307679315|gb|GL456412.1| GENE 102 103800 - 104450 696 216 aa, chain - ## HITS:1 COG:no KEGG:LACR_2103 NR:ns ## KEGG: LACR_2103 # Name: not_defined # Def: hypothetical protein # Organism: L.lactis_SK11 # Pathway: not_defined # 5 179 37 214 245 158 62.0 2e-37 MEQKKLLLLNLQFFAEKDETDIPDGSETSKKLNVDELSDEEITAIKEKFGFKDDKEVDSI VKSKKSRWQKELEEEKNEAARLAKLSEEERQKELLNKEKSDFEKEKEAFRQEQLFVEKGN QLQSIGISKELASRIKGDTAEEILEDVKTFKKAWDEALKIAVDQALLSSVDSPLGSNASI PDINPFAPETLNLTEQGRLLREDPEKAKALQALVNK >gi|307679315|gb|GL456412.1| GENE 103 104737 - 104958 259 73 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|307290089|ref|ZP_07570013.1| ## NR: gi|307290089|ref|ZP_07570013.1| conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX0411] # 1 73 4 76 76 117 98.0 3e-25 MDFRELKRKKERGVSNEEFMNKSKEFFKDADSIIVVGMDKDGYISTFYTQLSTTQVIGMV EIAKQQLIQEAEV >gi|307679315|gb|GL456412.1| GENE 104 104964 - 106112 511 382 aa, chain - ## HITS:1 COG:BH3531 KEGG:ns NR:ns ## COG: BH3531 COG5585 # Protein_GI_number: 15616093 # Func_class: T Signal transduction mechanisms # Function: NAD+--asparagine ADP-ribosyltransferase # Organism: Bacillus halodurans # 179 337 151 308 490 85 34.0 2e-16 MAKKKKQDEQTYWQLRNIKAEKRINDGAKALEDKLIIAYRQAQYYLTKQTRKLFDRSKKR TGLDEKEARKLLNETVSPSELVKLKVLSEQISNTTLQKEAKKKLTSLAFKKRITKAEDLK AKSFLVSKQIANVQLEKQTEFYIDVIHESYREATAESVIRQAKENAKNGLVIEVWNKKGY QFKELSTRYTKNILDSHWHGSNYSKRLWSDTEALATRLEALFTVESMTGMSEFEMAKTIA REFDRSIGVARRLIRTEANYMSNQAKLKAWQNRGIKYYMLVAVLDLKTSKICKNKDHKVY LVSKAVVNGANGTYPPFHPWCRTIAIIYSKRILNLPREAIDPISGDTMPIRGATTYNEWM DKLKEKYPEEKIALQKKKILGL >gi|307679315|gb|GL456412.1| GENE 105 106113 - 106424 194 103 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116512786|ref|YP_811693.1| ribosomal protein [Lactococcus lactis subsp. cremoris SK11] # 1 93 1 93 95 79 43 8e-14 MITAIFKKEDNQYVSYSISGHANFAPKGQDIICAGVSALYIAVTNVLIKQHAATIDVDGS IQLGIIKDSQYIVTVLYENLCEIAKEYPNHIEIVNRDEKSGAN >gi|307679315|gb|GL456412.1| GENE 106 106405 - 107832 1158 475 aa, chain - ## HITS:1 COG:no KEGG:llmg_0826 NR:ns ## KEGG: llmg_0826 # Name: ps335 # Def: portal protein # Organism: L.lactis_MG1363 # Pathway: not_defined # 1 461 1 459 502 655 72.0 0 MSIVVNRQIAGDLNKPSAELLNFCINKHVEELLRLQKLSDYYDGKHDILKRTKENEGAPN NKVLINHAKYVVDMNVGFMVGNPISYVAESDKNIGPILEAYDRVDIVSHDTELEKDLSTF GVGYELVYLKKTKDNDATQLEIKCIDPRGIFLVTDDTVDKNPLFAVHYQPVLTLQGGIDH YVIKYYNDNRVITYHAKSRGSGEYLFINAKPHYFKAVPVIEYRNNEEKQGDFEQAISLID AYNLLQSDRLNDKEAFVDAILFIRGFMLEDGDGEKLAKEKMLQTGALPSEVDAGYLTKEL NEDGVNLLRSAILDDIHKITYVPDMNDEKFSGNVSGEAMKYKLFGLLQLMSVKSRYMIKG LRKRLELFETILKVKDNSIDAQGTKIKLKPNLPVNTSDIINQIVSAYQAGILPLKVLLGW LPDIDDVDEVLKQLNTEKEKAIELNQKALGVQAKDSHSDLDKGSEEDNYDDYSNI >gi|307679315|gb|GL456412.1| GENE 107 107846 - 109129 622 427 aa, chain - ## HITS:1 COG:lin0105 KEGG:ns NR:ns ## COG: lin0105 COG1783 # Protein_GI_number: 16799183 # Func_class: R General function prediction only # Function: Phage terminase large subunit # Organism: Listeria innocua # 12 415 24 439 443 140 29.0 4e-33 MSKKLSEFLPKAFHTTWRVALNSNILHVVEKGGRGSGKSSGIAHIIVQLIMRYPVNAVAI RYVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMKITYKPRGNYIVFRGAQNPERIKSL KDSRFPFAIAWIEELAEFKTEDDVKTITNSLLRGELADGLFYKFFYSYNPPKRRQSWVNK KYESSFQPENTFVHHSTYKDNPFIAQAFIEEVNATRAKNPKRAEWEYDGKAIGSGVVPFD NLRVIKGCITDEMVANFDNIRNGLDFGYATDPLAFVRWHYDKKKNGIYAIDEIYGVKISN RELAKKVKAKGYEADRIGADSAEPKSIAELINEHSIKKLYGVKKGPDSVEYGEGWLDDLD FICIDPLRTPNIAHEFENIDYQTDKDGNPKPRLEDKDNHTIDATRYAFSDDMRNIKVSIT NKVKFGF >gi|307679315|gb|GL456412.1| GENE 108 109122 - 109916 701 264 aa, chain - ## HITS:1 COG:lin1733 KEGG:ns NR:ns ## COG: lin1733 COG5484 # Protein_GI_number: 16800801 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 235 1 253 294 170 44.0 3e-42 MARKRDPRRDEAKKIWLDSGGKKVLKELASELNVSDSQIRKWKSVDKWAEELKGNVTKSN SNVTNKSGAPPGNKNAKGNKGGSPPKGNKNAIKTGEYETIFADMLSDEEKDIYSNLNDDP FFILNDEIRLLKIRQFRMMKRIKEAEKGLNDEEVERLQQLRKVKEPSSIGGKVVTVKREV LKDVQITRKTFRKLDDILAIEDALTRISNQLTKAIKQQNALLANDAKLQLLKVQTEKVKA SLDATSGDMDMPVFIDDISGDEYE >gi|307679315|gb|GL456412.1| GENE 109 109969 - 110193 130 74 aa, chain - ## HITS:1 COG:no KEGG:EF2021 NR:ns ## KEGG: EF2021 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 23 72 2 51 55 74 70.0 1e-12 MDNYWYISLNHHYPKPMKNQHKRVVMSVQIKKEYSIIEMTREATPQEIDYCKLVYCGHGC WSDKHVQENVEKYI >gi|307679315|gb|GL456412.1| GENE 110 111223 - 111297 59 24 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYKKGIKSVANGYLKATNSSAEAN >gi|307679315|gb|GL456412.1| GENE 111 111310 - 111573 333 87 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|307290096|ref|ZP_07570020.1| ## NR: gi|307290096|ref|ZP_07570020.1| hypothetical protein HMPREF9509_00407 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9509_00407 [Enterococcus faecalis TX0411] conserved hypothetical protein [Enterococcus faecalis TX2141] # 1 87 23 109 109 170 100.0 4e-41 MLLQIDKFNKKELEGKEAAKLLVDYIGGVSGTSCDSDAVKVFNNSNPIVITFGKEQTTAI NLPYYEDFKIVAVWLLNDEGKTLRKLI >gi|307679315|gb|GL456412.1| GENE 112 111847 - 112263 296 138 aa, chain - ## HITS:1 COG:no KEGG:EF2024 NR:ns ## KEGG: EF2024 # Name: not_defined # Def: ArpU family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 138 1 138 138 236 97.0 2e-61 MIQLLKEVDFRQTKANARNVLKNFRRLERIAGRSLIDLKSPIITDMPKSQSHGNKAEDAL VQLADAEAERDAILSALMALSLTSRQILHYSFCVQDHYSNYKIAREVGYSERSIQRMKSE ALIEFAEAYRNGKIIAYK >gi|307679315|gb|GL456412.1| GENE 113 112686 - 112853 267 55 aa, chain - ## HITS:1 COG:no KEGG:EF2829 NR:ns ## KEGG: EF2829 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 55 1 55 77 106 94.0 2e-22 MSYPEVYIIGRQVDGVYVEYLHGAEQADLFFDYTIARDERNHMNKTNTKDGEWRI Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:32:40 2011 Seq name: gi|307679314|gb|GL456413.1| Enterococcus faecalis TX0411 genomic scaffold Scfld39, whole genome shotgun sequence Length of sequence - 15418 bp Number of predicted genes - 21, with homology - 19 Number of transcription units - 7, operones - 6 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 98 - 157 8.0 1 1 Op 1 42/0.000 + CDS 192 - 911 204 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 2 1 Op 2 12/0.000 + CDS 913 - 1755 724 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 3 1 Op 3 . + CDS 1752 - 2702 1060 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin 4 1 Op 4 . + CDS 2717 - 2950 172 ## EF0578 iron-dependent repressor family protein 5 1 Op 5 . + CDS 2980 - 3072 111 ## 6 1 Op 6 . + CDS 3078 - 3200 71 ## + Prom 3208 - 3267 4.8 7 2 Tu 1 . + CDS 3345 - 3863 315 ## EF0579 transcriptional regulator, putative + Term 3877 - 3913 -0.3 + Prom 3908 - 3967 4.5 8 3 Op 1 34/0.000 + CDS 3994 - 4662 303 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters + Term 4713 - 4752 4.5 + Prom 4685 - 4744 4.3 9 3 Op 2 . + CDS 4769 - 6088 855 ## COG1122 ABC-type cobalt transport system, ATPase component 10 3 Op 3 . + CDS 6106 - 6675 518 ## EF0582 hypothetical protein 11 4 Op 1 35/0.000 + CDS 6785 - 8539 215 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 12 4 Op 2 . + CDS 8493 - 10265 204 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein + Term 10382 - 10441 1.6 + Prom 10540 - 10599 6.7 13 5 Op 1 . + CDS 10788 - 11048 437 ## PROTEIN SUPPORTED gi|229546432|ref|ZP_04435157.1| 30S ribosomal protein S14 14 5 Op 2 . + CDS 11042 - 11242 337 ## PROTEIN SUPPORTED gi|227554644|ref|ZP_03984691.1| 50S ribosomal protein L32 15 5 Op 3 . + CDS 11273 - 11650 552 ## EF0587 hypothetical protein 16 5 Op 4 . + CDS 11671 - 11820 246 ## PROTEIN SUPPORTED gi|229546435|ref|ZP_04435160.1| 50S ribosomal protein L33 17 5 Op 5 . + CDS 11844 - 12008 229 ## COG0523 Putative GTPases (G3E family) + Prom 12245 - 12304 6.0 18 6 Op 1 . + CDS 12347 - 12793 384 ## EF0590 polysaccharide deacetylase family protein 19 6 Op 2 . + CDS 12818 - 13906 671 ## COG0726 Predicted xylanase/chitin deacetylase + Prom 14149 - 14208 5.6 20 7 Op 1 . + CDS 14235 - 14624 365 ## COG3443 Predicted periplasmic or secreted protein 21 7 Op 2 . + CDS 14669 - 15097 405 ## COG5341 Uncharacterized protein conserved in bacteria + Term 15114 - 15152 -0.9 Predicted protein(s) >gi|307679314|gb|GL456413.1| GENE 1 192 - 911 204 239 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 227 1 237 245 83 28 1e-15 MLEVKKLTVCYNDFLALNEISLKIQEGALTGIIGPNGAGKSTLLKAMLNIIPHQGDVSIN NEDINKKLVKIAYVEQKADIDFTFPIKVKECVSMGTYAGMKVFQRIKNAEWQRVSKALEK VDMGKYSNHQIGELSGGQFQRVLLARCLAQNADFIFLDEPFVGIDLVSERIIMDTLKELK HQGKTVLIVHHDLSKVKKYFDNIILLNRNLIAHGSVESVFNEENLKKAYGDTIFIGEGE >gi|307679314|gb|GL456413.1| GENE 2 913 - 1755 724 280 aa, chain + ## HITS:1 COG:L149891 KEGG:ns NR:ns ## COG: L149891 COG1108 # Protein_GI_number: 15673299 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Lactococcus lactis # 1 276 1 276 281 347 83.0 2e-95 MLQNFINGLYDFHFLQNALITSVVIGVVSGTVGCFIILRGMSLMGDAISHAVLPGVAISY ILGINFFIGAIVFGLLASIIITFIKSNSVIKGDTAIGITFSSFLALGVILIGVANSSTDL FHILFGNILAVQDIDKWITIGVSVLVLVIVVLFFKELLITSFDPLMAKAIGMNVSFYHYL LMVLLTLVAVTAMQSVGTILIVAMLITPAATAYLYANSLKTMIFISATVGASSSLLGLFI GYSFNIAAGSSIVLTAAFLFVISFLISPKQKFLRKKERKL >gi|307679314|gb|GL456413.1| GENE 3 1752 - 2702 1060 316 aa, chain + ## HITS:1 COG:SP1650 KEGG:ns NR:ns ## COG: SP1650 COG0803 # Protein_GI_number: 15901485 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Streptococcus pneumoniae TIGR4 # 9 316 1 309 309 449 76.0 1e-126 MMRKWEAVLGSLGILIALFIFGACSINSKDKDKVASNEKLKVVVTNSILADITENIAKDK IDLHSIVPIGKDPHEYEPLPEDVQKTSKADLIFYNGVNLETGGNAWFTKLVKNANKEENK DYFAASDGIDVIYLEGQSEKGKEDPHAWLNLENGIIYAKNIEKQLAEKDPDNKKFYKENL DKYIEKLDSLDKEAKSKFASIPNDKKMIVTSEGCFKYFSKAYNVPSAYIWEINTEEEGTP DQIKHLVEKLRTTKVPSLFVESSVDDRPMKTVSKDTNIPIYSTIFTDSIAEKGQDGDSYY AMMKWNLDKIAEGLSK >gi|307679314|gb|GL456413.1| GENE 4 2717 - 2950 172 77 aa, chain + ## HITS:1 COG:no KEGG:EF0578 NR:ns ## KEGG: EF0578 # Name: not_defined # Def: iron-dependent repressor family protein # Organism: E.faecalis # Pathway: not_defined # 1 77 1 77 77 119 100.0 3e-26 MVQIKTTTILIYLLAIQELSKRKKKLKNNDLAKVLSVSPASVSEMLAKLRYEDYLDIGFQ LTDKGKKFIDDYKKGFK >gi|307679314|gb|GL456413.1| GENE 5 2980 - 3072 111 30 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAIGVIMIGLILITGYNFFKSFSDYFRKGE >gi|307679314|gb|GL456413.1| GENE 6 3078 - 3200 71 40 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSLLILVGLLFVSVILLFLISLALRNEFSNRRTIETSSPV >gi|307679314|gb|GL456413.1| GENE 7 3345 - 3863 315 172 aa, chain + ## HITS:1 COG:no KEGG:EF0579 NR:ns ## KEGG: EF0579 # Name: not_defined # Def: transcriptional regulator, putative # Organism: E.faecalis # Pathway: not_defined # 1 172 1 172 172 311 98.0 5e-84 MTAGVTTGAFYKHFTSKEALFEEIIQPHINALINMYNEEFTKYLLNLENIDIEKSWRENF NELDPFINYIFENKRIFDLVLFQSAGTKYQDIVEKITSFVTKKTVCCLDKLKTIGMINQN LVFNEEEIHFYIYSFYATFYDILKHSYSKEKTMLLTRRLYRFSVPGWIELLS >gi|307679314|gb|GL456413.1| GENE 8 3994 - 4662 303 222 aa, chain + ## HITS:1 COG:SP1437 KEGG:ns NR:ns ## COG: SP1437 COG0619 # Protein_GI_number: 15901289 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Streptococcus pneumoniae TIGR4 # 81 222 4 144 147 69 30.0 5e-12 MSKINPLTLITLNIFFPVIIFLGKGNIFQVGCFIIATVLVLMFRKIKTCIYFILIYSVLF LAMKIIDAIKIEFFTIFFGTSLYIVFRMLPVVMISWLLVSVYTSNELLSSLEKIHLPKKI MLSITVVIRFFPTYRSEIRMIKESLKMRNIRLSFFQPLQYLEFLLVPVLIRATMIAEEMT ANAITKGIESPVKRSSYYKTNMSLLDYIILFSVTIFFLSILI >gi|307679314|gb|GL456413.1| GENE 9 4769 - 6088 855 439 aa, chain + ## HITS:1 COG:MTH454 KEGG:ns NR:ns ## COG: MTH454 COG1122 # Protein_GI_number: 15678482 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Methanothermobacter thermautotrophicus # 2 416 36 462 480 233 33.0 4e-61 MITGSSGSGKSTLLKLMNGLIPRLYDGKLVGEILFENNSLKSLTQESISKNIGYVSQDPR GQFFTTNTTSELVFSMENFGFTKEHMDKRINELAELLDLSNILDKNIFSLSSGERQKISI GCSLSLNSKLIILDEPSSNLDFKATKKLADLLCDLKNKGFTIVIAEHRFYYLKELIDQVL FVKNRTVKTTTIQLLKTENNNALRKFDIFNSSIEVPYIEKASADVLKVEEITYENILKDI NFDVKVGDVIGLVGKNGVGKTTLLRILMKIIRPTKGKIIENKKNLSSPFLVMQEMDYQFF TESVRSELALGNEIVSKDQQEKILKKMELYKMKDQLPFDLSGGEKQRLLVSIASLSKTNL FLFDEPTSGLDYINMERIADLIKDLKERGAVVIATHDPEFLYKTCNRIIYLKNGGIKKDI KLRVEDSTLIEQIFNDITK >gi|307679314|gb|GL456413.1| GENE 10 6106 - 6675 518 189 aa, chain + ## HITS:1 COG:no KEGG:EF0582 NR:ns ## KEGG: EF0582 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 189 1 189 189 299 97.0 4e-80 MKTKDYIFIGLATVISLVIYFFSIMISSIGGAFGHSISPGIFGLLSGIIFVYISYNYSRK GIFTIYTIVLLLFFTLMGGAYLPWFISSISTAILADIILSVFGYDRAIPQVVSWALMQLG SAAGQWIPIWFFTDRFRQDWIDRGQSAATMDAMIHYAVGIWGIISVLVVASLSMIGVLIG RKVLKKYKK >gi|307679314|gb|GL456413.1| GENE 11 6785 - 8539 215 584 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 336 556 2 226 245 87 27 5e-17 MKVYKKLFSYVPKKKCYGWLATLFSGFSVVLTVYGYYSIYKFLQSLIIVGDEYLAKSYAV QTVAWLTLGALFYIFSGLFSHILGFRLETNLRKKGISGLTGASFRFFDLNSSGYIRKTID DNAAKTHMAIAHLIPDSAQAIVTPVLSVALGFFINFKIGLVLIAMLVIGVFLLKKMTGNT NFIQKYQDSLDVLSSETVEYIRGIQVIKIFGAKVTSFKALNKAINDYAKFAYKYSLSGKT PFILFQWLFFGIVCILIVPITFFITSLTTPKILAVDLLMLFFLSGIIFVSFMRIMYVSMH LFEARYAVETLDSLYLEMKQDQLKYGNETQIKNCDIAFENVSFSYKEECVLENFNLVLEQ KRIYALVGKSGSGKSTIAKLISGFYNVDKGQIKIGGKPLNHYSKDTIINTIAFVFQDTKL FNQSIYDNVSIANPQAPASKVFDALRLAGCESILEKFPEREHTLIGSKGVYLSGGEKQRI AIARAILKDAKIVIMDEASASIDPDNEYELQKAFQYLMKEKTVIMIAHRLSSIKSVDEIL VLSEGKIVERGNHNELMAKHRVYKQLVTNYENANDWRLDNEKFL >gi|307679314|gb|GL456413.1| GENE 12 8493 - 10265 204 590 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 342 552 7 214 311 83 29 1e-15 MRMQMIGGLTMKSFYKKKFALTDQGAEALTKASISSFFVYCINMVPAFIIMMLIDELVLE NAKPHWLYFAVSFVTLLFMYWLLDREYENLYNSTYKESAHLRVQIADDLSNLPLSYFSKH NLSDLSQTIMSDVEGIEHAMSHAIPKSGGMALFFPFISVMLLVGNVKMGLAVILPTLFSF VLILLSKKSQTKANTKYYDTLRENSEEFQETIELQQEINSFNLSKKVQDRLFKKMEESER IHLKVELSTFSVMALSSIFSYVSLAVVILVGVHLLLTGEVTILYVVGYLLAAIKIKDSFD SMKEGVLEIFYLAPKIQRIRAMKETSIQEGSDSSLKSFDIELRDVSFSYDNNTPILDHIS FTAKQGEVTTLVGASGSGKTSILKLVSRLYDYDEGCILIDGYDIKRVSPASLFSKIAIVF QEVTLFNTSILENIRIGNSQASDEEVKKAARLSNCEDFIEKLPDGYHTLVGENGSSLSGG ERQRLSIARAFLKNAPILILDEITASLDVENEKRIQESLNRLIQDKTVLIISHRLKSIEK VNKIVVMDQGKVVDQGTHSELYRRSEIYKNLIKKTKLSEKFVYEKEAQSR >gi|307679314|gb|GL456413.1| GENE 13 10788 - 11048 437 86 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229546432|ref|ZP_04435157.1| 30S ribosomal protein S14 [Enterococcus faecalis TX1332] # 1 86 1 86 86 172 100 1e-42 MAKKSKIAKAKKQMAMIEKYADKRQELKAAGDRTALAKLPRDSNPNRLRLRDQTDGRPRG YMRKSRIKFRELAHQGLIPGVKKASW >gi|307679314|gb|GL456413.1| GENE 14 11042 - 11242 337 66 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227554644|ref|ZP_03984691.1| 50S ribosomal protein L32 [Enterococcus faecalis HH22] # 1 66 1 66 66 134 98 4e-31 MVRGGNIMAVPARKTSKAKKRLRRTHQTVVKPEISFDEANGDYRRSHHVSLKGYYNGKKV IKGASK >gi|307679314|gb|GL456413.1| GENE 15 11273 - 11650 552 125 aa, chain + ## HITS:1 COG:no KEGG:EF0587 NR:ns ## KEGG: EF0587 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 125 1 125 125 211 96.0 1e-53 MEIIYPPLVEEGLKYYLETTQQSLDKSTFYRSMVERGIITETGLPTQQAIENGLVKDYYE DQGLSFDEFLRIYPIFEEYDKELFQCIDGYWEIPVDMKENLVSQLESGELNFEDAQQIQA YLEDR >gi|307679314|gb|GL456413.1| GENE 16 11671 - 11820 246 49 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229546435|ref|ZP_04435160.1| 50S ribosomal protein L33 [Enterococcus faecalis TX1332] # 1 49 1 49 49 99 100 1e-20 MRQNIILECVETGERLYLTSKNKRNNSERLELKKYSPKLRRRAIFKEVK >gi|307679314|gb|GL456413.1| GENE 17 11844 - 12008 229 54 aa, chain + ## HITS:1 COG:all1751 KEGG:ns NR:ns ## COG: all1751 COG0523 # Protein_GI_number: 17229243 # Func_class: R General function prediction only # Function: Putative GTPases (G3E family) # Organism: Nostoc sp. PCC 7120 # 2 52 9 57 323 57 50.0 6e-09 MSIPVTIVSGFLGAGKTTLINQALQFSPYPREEIIIIENEFGEVGIDHKLKVLK >gi|307679314|gb|GL456413.1| GENE 18 12347 - 12793 384 148 aa, chain + ## HITS:1 COG:no KEGG:EF0590 NR:ns ## KEGG: EF0590 # Name: not_defined # Def: polysaccharide deacetylase family protein # Organism: E.faecalis # Pathway: not_defined # 1 148 1 148 516 254 93.0 6e-67 MSDKNTYARRSQRHKQEPDICENTNQLNEAVKSKTGNENKQPKIPKKKSNYSKYIFALFT AHILVIVATGGYIVYTLKQQEVEAQTKYETAAKNLMASIQEEQDQSGISTKIDTINDGEN KCLVYSPVYESTVPFKNANQLVDELAQK >gi|307679314|gb|GL456413.1| GENE 19 12818 - 13906 671 362 aa, chain + ## HITS:1 COG:lin0436 KEGG:ns NR:ns ## COG: lin0436 COG0726 # Protein_GI_number: 16799513 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Listeria innocua # 44 361 148 465 466 187 36.0 3e-47 MLTVARIKATAISSKIGQYRIEADSFIWDRSKENFKKLDSISEKTIYVSEKTGKEITNKD LIPDEGSLLGIQQVIQQSILDHAKELEKIIDAVLTIDRISYESKMTYTPDELTIDLPKNT TETTKVTLKYRDIAPFIDTDLVSQESIKDALPALDENKKYVALTFDDGPNNSSTLDLLNI LKTNNVKATFFMLGQMVDQNPDVAKQVHDEGHEVACHLYSHPQLNTLSTDELQSEMNKAN KANKAIFKATGVLPRNIRPPYGAIDKKSAETIGMPIIQWNIDSLDWKTRNPEAINNVVKQ NVFNGAIILIHDIHHESVKAVPGLITMLKNEGYEFVTIDQLLSGKQKPLHQYFGMNDERL VD >gi|307679314|gb|GL456413.1| GENE 20 14235 - 14624 365 129 aa, chain + ## HITS:1 COG:L136652_2 KEGG:ns NR:ns ## COG: L136652_2 COG3443 # Protein_GI_number: 15673284 # Func_class: R General function prediction only # Function: Predicted periplasmic or secreted protein # Organism: Lactococcus lactis # 48 125 3 80 194 95 60.0 3e-20 MANEAGIKLEVLNPLESLIKEQMNNGEDYVSVMEDNLKALEKTTMVAGEEVVPEKEAKDE KTVASGCFKDVDVKDPELSDYTGEWQSVYPLLKDGILDEVFDYKAKLNKDMTAAEYKDYY TTGYEIVFL >gi|307679314|gb|GL456413.1| GENE 21 14669 - 15097 405 142 aa, chain + ## HITS:1 COG:lin0431 KEGG:ns NR:ns ## COG: lin0431 COG5341 # Protein_GI_number: 16799508 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 23 138 12 131 140 86 41.0 1e-17 MKKTITILTDYLGLGKIDMKIGDVIIIGILIISSFIPLFIFSLEKGNQGTTKYAVVRING KEVDRFNLDKISHKYVKYYPAKGQYNIIEIKDGKIRDREDNSPDQIAVRTGWISNPGQTS ICLPHKLVISIEKKGSPDYYIY Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:33:05 2011 Seq name: gi|307679313|gb|GL456414.1| Enterococcus faecalis TX0411 genomic scaffold Scfld42, whole genome shotgun sequence Length of sequence - 2171 bp Number of predicted genes - 4, with homology - 3 Number of transcription units - 2, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 788 552 ## gi|315158692|gb|EFU02709.1| hypothetical protein HMPREF9508_01488 2 1 Op 2 . - CDS 778 - 915 141 ## - Term 1175 - 1222 3.1 3 2 Op 1 . - CDS 1402 - 1728 236 ## gi|307290126|ref|ZP_07570048.1| conserved domain protein 4 2 Op 2 . - CDS 1808 - 2170 367 ## Bcell_3752 hypothetical protein Predicted protein(s) >gi|307679313|gb|GL456414.1| GENE 1 2 - 788 552 262 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315158692|gb|EFU02709.1| ## NR: gi|315158692|gb|EFU02709.1| hypothetical protein HMPREF9508_01488 [Enterococcus faecalis TX0312] # 1 262 1 262 285 431 100.0 1e-119 MKFNLLALLTVVTLVFVGCTKAPDSLKNSSNSAEVNVSTSTSEAVQCSQETTSLPEELLG DWQINNKDAGIEISDSKAVFRIGRSQVESKDYYVDVNNKMLLHVYFSFEYDGVKYSEVSI ERTGYSEFISKSVGILTMHTKDGQYISLGVKKVSGENNETEAVTEQTMDERIDSSESNET EVDTGKTIDERIDSFIETYTAIPPTWKLVNEDKGITINTDTEISTDAQSLSDLLANLTGI SNAVTEQVGKNVPLRLLENGKK >gi|307679313|gb|GL456414.1| GENE 2 778 - 915 141 45 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAHNERFKQEIIQELEKGVQHQKLISKTAQKFDISLAKEVKLHEV >gi|307679313|gb|GL456414.1| GENE 3 1402 - 1728 236 108 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|307290126|ref|ZP_07570048.1| ## NR: gi|307290126|ref|ZP_07570048.1| conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX0411] # 1 108 5 112 112 194 99.0 2e-48 MNKVNMNKKFVIIGIVVLAIIGIIFSKMTGTSGLEKSSKPLVTQILQEQYSLNRTCDDVT ITHENGDNTYRAKAILDNGSAININIEYYPKKDRIYVEIPYTEVLMLN >gi|307679313|gb|GL456414.1| GENE 4 1808 - 2170 367 120 aa, chain - ## HITS:1 COG:no KEGG:Bcell_3752 NR:ns ## KEGG: Bcell_3752 # Name: not_defined # Def: hypothetical protein # Organism: B.cellulosilyticus # Pathway: not_defined # 1 117 1 124 129 71 30.0 1e-11 MYCRKCGKEITDESKYCQFCGALQETDETTGADAVKKSTEQTINEMKEQIVHGQETGKLY LIIGWISMVVSLAFIPVVFGAVAVIMGYLYREKDEKMGTILMIAGVAGAIFGVLLGMSMY Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:33:44 2011 Seq name: gi|307679312|gb|GL456415.1| Enterococcus faecalis TX0411 genomic scaffold Scfld43, whole genome shotgun sequence Length of sequence - 45006 bp Number of predicted genes - 58, with homology - 54 Number of transcription units - 17, operones - 10 average op.length - 5.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 373 429 ## EF2975 hypothetical protein + Term 620 - 657 7.0 + Prom 412 - 471 5.1 2 2 Op 1 . + CDS 720 - 2633 2274 ## COG1193 Mismatch repair ATPase (MutS family) + Prom 2662 - 2721 4.0 3 2 Op 2 . + CDS 2751 - 4166 1679 ## COG1785 Alkaline phosphatase + Term 4176 - 4221 9.1 + Prom 4194 - 4253 8.8 4 3 Tu 1 . + CDS 4278 - 5249 1066 ## COG1834 N-Dimethylarginine dimethylaminohydrolase + Term 5284 - 5323 -0.7 + Prom 5386 - 5445 9.2 5 4 Op 1 . + CDS 5675 - 6364 1024 ## EF2970 hypothetical protein + Term 6400 - 6437 3.1 6 4 Op 2 . + CDS 6452 - 7585 1233 ## EF2969 hypothetical protein 7 4 Op 3 . + CDS 7569 - 7967 265 ## EF2968 cell wall surface anchor family protein 8 4 Op 4 . + CDS 8013 - 8237 256 ## EF2967 hypothetical protein + Term 8239 - 8292 14.4 + Prom 8243 - 8302 8.0 9 5 Op 1 2/0.000 + CDS 8403 - 10412 1620 ## COG3711 Transcriptional antiterminator 10 5 Op 2 11/0.000 + CDS 10414 - 10713 189 ## PROTEIN SUPPORTED gi|148984431|ref|ZP_01817719.1| PTS system, IIB component, putative 11 5 Op 3 . + CDS 10728 - 12095 1648 ## COG3037 Uncharacterized protein conserved in bacteria + Term 12107 - 12174 24.0 - Term 12100 - 12155 16.5 12 6 Tu 1 . - CDS 12158 - 13132 690 ## COG0657 Esterase/lipase - Prom 13365 - 13424 6.0 + Prom 13235 - 13294 4.2 13 7 Op 1 13/0.000 + CDS 13344 - 14339 883 ## COG1609 Transcriptional regulators + Prom 14353 - 14412 6.7 14 7 Op 2 6/0.000 + CDS 14437 - 15348 1187 ## COG0524 Sugar kinases, ribokinase family 15 7 Op 3 1/0.286 + CDS 15364 - 15759 534 ## COG1869 ABC-type ribose transport system, auxiliary component 16 7 Op 4 . + CDS 15780 - 16667 1009 ## COG4975 Putative glucose uptake permease + Term 16672 - 16718 6.6 17 8 Tu 1 . - CDS 16687 - 17571 1001 ## COG0583 Transcriptional regulator - Prom 17605 - 17664 6.7 + Prom 17564 - 17623 5.8 18 9 Op 1 1/0.286 + CDS 17679 - 18260 708 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 19 9 Op 2 . + CDS 18260 - 18997 907 ## COG4221 Short-chain alcohol dehydrogenase of unknown specificity 20 9 Op 3 . + CDS 19037 - 19105 79 ## 21 9 Op 4 . + CDS 19178 - 20491 1633 ## COG2252 Permeases + Term 20513 - 20563 11.2 + Prom 20546 - 20605 5.8 22 10 Tu 1 . + CDS 20650 - 21864 1659 ## COG0301 Thiamine biosynthesis ATP pyrophosphatase + Term 21869 - 21918 11.5 + Prom 21907 - 21966 4.5 23 11 Op 1 . + CDS 22006 - 22641 571 ## COG2344 AT-rich DNA-binding protein 24 11 Op 2 . + CDS 22705 - 23193 683 ## COG2077 Peroxiredoxin + Term 23375 - 23423 -0.6 + Prom 23489 - 23548 7.8 25 12 Tu 1 . + CDS 23586 - 26228 2919 ## COG0525 Valyl-tRNA synthetase + Term 26233 - 26284 15.5 - Term 26225 - 26267 10.1 26 13 Op 1 . - CDS 26274 - 26873 449 ## COG0398 Uncharacterized conserved protein 27 13 Op 2 . - CDS 26866 - 29430 2080 ## COG4485 Predicted membrane protein - Prom 29566 - 29625 6.1 28 14 Op 1 . + CDS 29679 - 31001 1467 ## COG0285 Folylpolyglutamate synthase 29 14 Op 2 . + CDS 30988 - 31644 752 ## COG0637 Predicted phosphatase/phosphohexomutase 30 14 Op 3 . + CDS 31700 - 32251 524 ## COG2003 DNA repair proteins + Term 32436 - 32482 0.6 31 15 Tu 1 . - CDS 32273 - 33640 959 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs - Prom 33671 - 33730 4.3 32 16 Op 1 . - CDS 33750 - 34181 382 ## gi|307290162|ref|ZP_07570081.1| conserved domain protein - Prom 34201 - 34260 4.6 33 16 Op 2 . - CDS 34269 - 34613 359 ## EF2853 hypothetical protein 34 16 Op 3 . - CDS 34631 - 34963 344 ## COG1396 Predicted transcriptional regulators - Prom 35181 - 35240 9.1 + Prom 35197 - 35256 5.5 35 17 Op 1 . + CDS 35284 - 35460 286 ## EF2849 hypothetical protein 36 17 Op 2 . + CDS 35471 - 35614 264 ## gi|307290166|ref|ZP_07570085.1| hypothetical protein HMPREF9509_00472 37 17 Op 3 . + CDS 35586 - 35807 77 ## gi|307290167|ref|ZP_07570086.1| hypothetical protein HMPREF9509_00473 38 17 Op 4 . + CDS 35808 - 36224 362 ## gi|256962789|ref|ZP_05566960.1| predicted protein 39 17 Op 5 . + CDS 36229 - 36318 66 ## 40 17 Op 6 . + CDS 36311 - 36610 388 ## EF2844 hypothetical protein 41 17 Op 7 . + CDS 36607 - 36831 247 ## EF2843 hypothetical protein 42 17 Op 8 . + CDS 36834 - 36941 193 ## 43 17 Op 9 . + CDS 36934 - 37905 1062 ## COG3723 Recombinational DNA repair protein (RecE pathway) 44 17 Op 10 . + CDS 37868 - 38683 566 ## EF2840 hypothetical protein 45 17 Op 11 3/0.000 + CDS 38699 - 39487 391 ## COG3935 Putative primosome component and related proteins 46 17 Op 12 . + CDS 39499 - 40350 541 ## COG1484 DNA replication protein 47 17 Op 13 . + CDS 40352 - 40438 65 ## 48 17 Op 14 . + CDS 40489 - 40758 376 ## EF2837 hypothetical protein 49 17 Op 15 . + CDS 40761 - 40928 106 ## gi|257078081|ref|ZP_05572442.1| predicted protein 50 17 Op 16 . + CDS 40907 - 41371 341 ## EF2836 hypothetical protein 51 17 Op 17 . + CDS 41383 - 41988 608 ## EF2835 hypothetical protein 52 17 Op 18 . + CDS 42013 - 42210 228 ## EF2834 hypothetical protein 53 17 Op 19 . + CDS 42262 - 43512 758 ## COG0270 Site-specific DNA methylase 54 17 Op 20 . + CDS 43518 - 43922 373 ## CKR_2917 hypothetical protein 55 17 Op 21 . + CDS 43919 - 44278 361 ## gi|307290181|ref|ZP_07570100.1| conserved domain protein 56 17 Op 22 . + CDS 44279 - 44557 374 ## EF2120 hypothetical protein 57 17 Op 23 . + CDS 44569 - 44787 272 ## gi|307275418|ref|ZP_07556560.1| hypothetical protein HMPREF9521_01045 58 17 Op 24 . + CDS 44784 - 44966 183 ## gi|307275419|ref|ZP_07556561.1| hypothetical protein HMPREF9521_01046 Predicted protein(s) >gi|307679312|gb|GL456415.1| GENE 1 2 - 373 429 123 aa, chain + ## HITS:1 COG:no KEGG:EF2975 NR:ns ## KEGG: EF2975 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 123 127 247 247 229 98.0 2e-59 NIATGPLSSGSGAPAAEVPIETAIKLLKDMGGSSIKYFPMKGLAHKEEYQAVAAACAKYD FYLEPTGGIDLENFEEIVQIAVDAGVKKIIPHVYSSIIDQETGDTRTEDVKTLLTMMKKT LNK >gi|307679312|gb|GL456415.1| GENE 2 720 - 2633 2274 637 aa, chain + ## HITS:1 COG:CAP0099 KEGG:ns NR:ns ## COG: CAP0099 COG1193 # Protein_GI_number: 15004802 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Clostridium acetobutylicum # 1 626 1 625 629 518 43.0 1e-146 MNHETIQKLQFTTILKEVQTRAIGEYSKERLAKMVPATRLETVQSRLTETTEARLIIDSG QHVPFMGLSQITRLLQQVKKGLILTPNELIEVADFLRSSQRIQKFFEKNQYQTPRLFSYS QHLADFRAIEEQIYTKIHNQKVATDASRQLRKIRRQINECQQEIETKVTKFLRNKNNQLY IQENMMVKKGEHYTVPIKASYKNKVSGTIIEQSNKGQTVFIEPVAISKLNEQLTLLKAEE TAEEYQILAELTGLINEQERLVDQAVDTMTTLDIIFARGKYSREIGGITPKVNKEERLRI VQGKHPLLLEHAVPLTFSLGAEYRGLVITGANAGGKTVVLKTVGLLTVMTQFGLQIPAQA GTEIPVLDEIFVDIGDQQNLENALSTFSGHMKNIAEMLRNVKRHTLVLLDEIGSGTEPNE GAGLAIAIMETMYQKGALVVATTHYGEIKRFAQEHDDFVPAAMAFDRETLTPKYQLKIGE VGDSQALWIARKMKMEPQLIEKAAHYIQRKEYPTNRSLFKPLKAKETTFATFVEETHRYQ KGDRVLLTETQQIGLVFTDEGEQEIQVFVNDKIENVPRRRLKLQAKAQDLYPQDYDLESL FTDFHERKKLKDIERGSKKAQKQLRKEAEKRAARRDK >gi|307679312|gb|GL456415.1| GENE 3 2751 - 4166 1679 471 aa, chain + ## HITS:1 COG:BS_phoB KEGG:ns NR:ns ## COG: BS_phoB COG1785 # Protein_GI_number: 16077641 # Func_class: P Inorganic ion transport and metabolism # Function: Alkaline phosphatase # Organism: Bacillus subtilis # 35 452 27 450 462 469 63.0 1e-132 MKKRALLGVTLLTFTTLAGCTNLSEQKSGEKQTEVAEAKATESEKASVKNVIFMIGDGMG NPYTTGYRYFKANHSDKRVPQTAFDTYLVGQQATYPEDEEENVTDSASAATAMAAGVKTY NNAIALDNDKSKTETVLERAKKVGKSTGLVATSEITHATPAAYGAHNVSRKNMAEIADDY FDDQIDGQHKVDVLLGGGSELFARKDRDLVKEFSQAGYGHVTDKKSLNENQDDKILGLFA PGGLPKMIDRTEEVPSLADMTEAALQRLDKNEKGFFLMVEGSQIDWAGHSNDIVGAMSEM QDFEAAFEKAIDFAKKDGETLVVTTADHSIGGLSLGKGDQYNWLTEPLHAAKRTPDFMAE EIIKNGNVEKTVTEYIDFQLSEAELKAVKTASESKDVEKIAQALRKIFDERSNTGWTTGG HTGEDVNVYAYGPQAEAFSGQIDNTDQAKIIFGLVDGTGQKAEIKDKGIGK >gi|307679312|gb|GL456415.1| GENE 4 4278 - 5249 1066 323 aa, chain + ## HITS:1 COG:MA3652 KEGG:ns NR:ns ## COG: MA3652 COG1834 # Protein_GI_number: 20092452 # Func_class: E Amino acid transport and metabolism # Function: N-Dimethylarginine dimethylaminohydrolase # Organism: Methanosarcina acetivorans str.C2A # 2 323 4 332 334 155 30.0 1e-37 MKKMHVESEFAPLRSVVLAQSQFCLPDKFDEADTTFLTEENARLTQNNEGRDLADFAPEQ QVRWEKEKEVMQGVLESYGVEVFRPRLLTTYEKEHGKELGVGYSNFFSRDPFFTIGNLLI EGNLRFQHRRQEILPIRPIIQQWTQEAEGYYFAAPQPDISEGALSEAGPFIEGGDVLVLG KTIFVGYSGLASNLAGIQWLANMIGHFGYEVVPVRLHPHILHLDCALSLLREGLMIVCEE AFLDGLPAQLANWEKIHVTLQEAAYLVTNGLPLNEETYITDQSFTTLIPQIEAKGIKVEA IDYHVSRMLGGSFRCTTQALIRE >gi|307679312|gb|GL456415.1| GENE 5 5675 - 6364 1024 229 aa, chain + ## HITS:1 COG:no KEGG:EF2970 NR:ns ## KEGG: EF2970 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 229 1 229 229 291 100.0 1e-77 MKKKTLVTLFAGTAILGASIAPAAAHATTTGTTPANVEMTSGSLPGGTGDGDDGSTQEPE PGSNTNFDLLYVPTEFKFASTEVSSDLSAISLDATGTQTKRYAVGDVRGTQAGWSVTAGV AEMKNGTATLEGSITFAQTGAVAKYDETAKTYSRDVAAFAADPGSPEFAGTTIPVGGAAV SIATAAVGKGQGTWDSELSNVKLNITTPSSQITNGAYTGNVTWTLVAAP >gi|307679312|gb|GL456415.1| GENE 6 6452 - 7585 1233 377 aa, chain + ## HITS:1 COG:no KEGG:EF2969 NR:ns ## KEGG: EF2969 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 377 1 377 377 704 100.0 0 MKTMRWLIVTVFICVMALSIPSAVQAEEADDNMNTKFTVKPNIPENQAKNTQSYYDLIVK PGQKQEVELSLINKTDEELTIDLNLANAVTNDNGLIVYNDFEKKPDSSLKVPLTTLIKLP EEHVKVPAKKTVTAKMTVEIPANGFQGLVLGGVYASLAEDEKEEKGKSTGLTSRYGFNVA IALRMSEDTPMYLAETLQLVKLVPTIALGNKSVQAVIQNPTSAIFPEVRLEGKVTKKGET KEYAKRILPSVRFAPNSTMNFHLDFGKEDVRPGTYIFEGKAVLKEDEQQVWPFKQEFTIS SQEAKKLNKEAVVKLVLPTWWNQAFYGLLVATIVSLILAIWRFTQQKATLKQQAYLQQEK QAALKNRQGARDDDNEK >gi|307679312|gb|GL456415.1| GENE 7 7569 - 7967 265 132 aa, chain + ## HITS:1 COG:no KEGG:EF2968 NR:ns ## KEGG: EF2968 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 11 132 1 122 122 209 99.0 3e-53 MTMKSKGSLLVTLGILLTVGIASLIVSSESFAEEVGQTNIGVTFYGGKEPLKTEGVIKPI EQPVTDKDKKTSQQQDKVSRKTTAKTNPTNAQTSLPRTGERNSTWLYSLGIACLLVVLTS FYYLNKKRKKEK >gi|307679312|gb|GL456415.1| GENE 8 8013 - 8237 256 74 aa, chain + ## HITS:1 COG:no KEGG:EF2967 NR:ns ## KEGG: EF2967 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 74 1 74 74 90 100.0 2e-17 MEITMWIWICAGLAVLCFALFLLFLVNSMNFVHLAKPKQSLVKQSMFSWLLLVMCGGWVA VAILLNIALQTQLT >gi|307679312|gb|GL456415.1| GENE 9 8403 - 10412 1620 669 aa, chain + ## HITS:1 COG:SPy1952_1 KEGG:ns NR:ns ## COG: SPy1952_1 COG3711 # Protein_GI_number: 15675752 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Streptococcus pyogenes M1 GAS # 8 491 12 500 532 185 26.0 3e-46 MNYKISYLLDEYAGQKIALSLAQQITDLSQRELVTQLSTIGGVVQQNTVSIPNLSANEWG KQLFQQRQVIYSETERQALIFLLTYSEIEELSVYHYQNFLDVSKGTILADIKKVRHQLAT ENIALSYERKRGFYLEGDEFRIRRFGKNWLARLLQQKSGTFALFCWLSQHQMSQYAKMRD GIQLAVQEAQLQLVPSRLDEISYFLAFSQKRLGKYKTVVWPENQLIQSLRAYPVSRRILS DLVGPVANVETESLFFTICLMTALQGELRDTKLEFLLDISGEIIRKMELLAVVQFEQPRE LLMNVYYHLVPAYFRISYGFYLPNVLIKDIRQSYRSLYHLCEQALAPLEKLTKRSIPSEE IGFFTILFGGEIFGQKNEQRQEKLKALIVCPSGISSSLILQSELRRLFPMIEFKETNAVR EIENVSEKSYDIIFSTVPIETAKKVYLTKPIMSSLEKNQLMHQVQSDWLLPGISMPDVKD ILDALKPYISLKKGVTEAQLYRVLHRKMNKILEKEEDLRPMLSELLTTETVQVLPEVADW RAGITEAAKPLLKNGSITEKYIDAMIQKVESFGPFIHICPDVALPHARPEDGVNQLGMSL LKIQKSVDLLEDPKHEIHLFICLAASDNETHLRALSSLTKILSKKESLHRLVAAETVPEI LSIIQEGEK >gi|307679312|gb|GL456415.1| GENE 10 10414 - 10713 189 99 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148984431|ref|ZP_01817719.1| PTS system, IIB component, putative [Streptococcus pneumoniae SP3-BS71] # 1 96 2 93 94 77 40 1e-13 MKIFTVCQSGLGTSFMVQMNIQQILEEVGVDTDNFQIDHTDVGSASGDMADYFFVEKTLQ DALGSIPDEKIIPLNAIIDYDETKEKVLKVLDDNGIAHQ >gi|307679312|gb|GL456415.1| GENE 11 10728 - 12095 1648 455 aa, chain + ## HITS:1 COG:SP2129 KEGG:ns NR:ns ## COG: SP2129 COG3037 # Protein_GI_number: 15901943 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 4 454 1 448 448 421 55.0 1e-117 METLLNLFVSIVSQPAILVSLIALLGLVLQKKKFSDVVQGTLKTFVGFLVLIGGAGLLAN SLTPFAEMFQTALNTQGVVPSNEAVVAIALQQYGTPTALIMLVGMVVNILLARFTRFKYI FLTGQAMMYVSCLTAVILVGAGFSVSLPMILLGGLFEGTLLTVTPALCQPFMKQITGNDK VAMGHTGNIGYAASGFIGKVFGNKEKSTEDIKIPKSFGFLRDSTISIMILMSIVYVILAL LAGTGYVEHELSNGENAIIFSLIQAGTFTAGFVVVLQGVRMVLGEIVPAFQGIAKKLVPN SKPALDVPIIFPYAPNAVLIGFFVSFIVGTISMLAMVGLNTTVIIPGVVGHFFCGAAAGV FGNSTGGRRGAILGAAFNGLLISWLPLFILPVLGDLQLASSTFADTDYLIPGLFLGKLGE AGPSLLVGGIIAFVVVVLLASAVLTMREKKVAEEN >gi|307679312|gb|GL456415.1| GENE 12 12158 - 13132 690 324 aa, chain - ## HITS:1 COG:mlr1247 KEGG:ns NR:ns ## COG: mlr1247 COG0657 # Protein_GI_number: 13471310 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Mesorhizobium loti # 66 322 43 295 317 85 26.0 1e-16 MKKKSIGLLLASAYLFHARSRQKSLKACLFEDSLRLSQIARLERNPKVTKAFYHWQRSLN EQVTLPKHLRHLFPLQEMTQFPTMYRMANSVIAPTKKAVLYLHGGGFTLNLAYSQLDFSY KLIEDLSFATDYFIPVYPLAPNKSFADIYNHCYAAYQEILQHYDPEDVILLGDSAGGTLV LNVLQNLAIDFPERLPKAAVLISPWLDGHLDIPVAKSYQKKDKMIGMNYLQLIAQEIDDT ANHSTLSLNCLSFDYQKFPPLFFVGGTHEVFCPSYHQFLKQLGPRPQDTCRLVPGMQHVF AMKQYLPEGQQARKQIAQFIQEQW >gi|307679312|gb|GL456415.1| GENE 13 13344 - 14339 883 331 aa, chain + ## HITS:1 COG:SA0261 KEGG:ns NR:ns ## COG: SA0261 COG1609 # Protein_GI_number: 15925974 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 4 328 2 327 332 265 43.0 8e-71 MTNKKVTIKDVANDSGVSITTVSQILNGNGARFSGKTVEKVLAAKERLNYQPDYFAQRMV MKKSKTIGVIVPDITNPFFAQLIRGIESVLYKENFILMLCNADQDVTREHEYLTELIRRS VDGFVIASSEISNQTINETLRAKKIPFIVLDQKKAEGFSDAVLTDDYRGGQLAAKHLQEQ RHEQVIVVMPPHAPVNIQQRLKGFCSVYTEKVQLIETELSKTGGYQAVPEILKTESTGIF AINDEIAFGLYRGLAEAGKKIPEDYSIIGYDNVDMCEYVSPPLTTIAQPVFQLGQTTATL LLERIHQPAKDWEEQTLPVQLIERFSTAPLK >gi|307679312|gb|GL456415.1| GENE 14 14437 - 15348 1187 303 aa, chain + ## HITS:1 COG:SA0258 KEGG:ns NR:ns ## COG: SA0258 COG0524 # Protein_GI_number: 15925971 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Staphylococcus aureus N315 # 2 300 3 301 304 246 48.0 4e-65 MNAVTIIGSINLDTTLRVKEMPKPGETIHAIEHFTAGGGKGANQAVAAKRSGAETYFIGA VGNDGAGAMMTDLMSQDEINLTGVTTLEKTATGQAFIMVDNAGENSIMIYAGANNAFTPK QVQEHQEIIEKSDFVIAQFESAIDSTIAAFKIAKKAGVKTILNPAPALEQVPEELLNVTD MIVPNETETEILTGIKITDEASMRKAAEALHQLGIEAVIITVGSKGAFYDVNGRSGIVPA FKVKAVDTTAAGDTFIGALSSILEKDFSNLEEAIRYGNKASSLTVQRFGAQPSIPYQHEL ADK >gi|307679312|gb|GL456415.1| GENE 15 15364 - 15759 534 131 aa, chain + ## HITS:1 COG:SA0259 KEGG:ns NR:ns ## COG: SA0259 COG1869 # Protein_GI_number: 15925972 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type ribose transport system, auxiliary component # Organism: Staphylococcus aureus N315 # 1 131 1 134 134 119 55.0 1e-27 MKKTKVINSDISRVIAQMGHFDKLSIGDAGMPVPRTTEKIDLAVTNGVPSFMEVLNNVLE ELAVQRIYLAEEIKTENPDMLAAIETRLPETPISFIPHTEMKQELNNCHAFIRTGEMTPY ANILLESNVVF >gi|307679312|gb|GL456415.1| GENE 16 15780 - 16667 1009 295 aa, chain + ## HITS:1 COG:SA0260 KEGG:ns NR:ns ## COG: SA0260 COG4975 # Protein_GI_number: 15925973 # Func_class: G Carbohydrate transport and metabolism # Function: Putative glucose uptake permease # Organism: Staphylococcus aureus N315 # 1 295 1 292 293 328 67.0 6e-90 MNATALLIGLGPLLGWGLFPTIASKIGGRPVNQILGTSLGTLIFAAIFSMINGLAFPAGM DLFFSILSGVGWACAQIITFKCFTMIGSSRAMPVTTAFQLLGASLWGVFFLGNWPGATAK LLGAFALVLIMIGAKMTVWSETESAESAGIMKKAVLLLAVGEIGYWAYSAAPQATAIDGM HAFLPQAIGMVIVAVIYSAVVTIKGGEISPFIEAVSYKQIFSGFFFAFAALTYLISAQPD MNGLATGFILSQTSVVLATLTGIWFLGQKKTAKEMTVTIIGLVLILAAATITVMI >gi|307679312|gb|GL456415.1| GENE 17 16687 - 17571 1001 294 aa, chain - ## HITS:1 COG:lin0450 KEGG:ns NR:ns ## COG: lin0450 COG0583 # Protein_GI_number: 16799526 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 1 292 1 291 291 311 53.0 8e-85 MELRVIHYFLAVVQEKTISGAAKQLHVSQPTLSKQLKELEEELGVTLFIRGNRQIQLTPE GEYLAKQGQDILSLANKTVTNLSQNEFINGEITIGGGETKAMSFLANALQQITSQHSADI HLHLYSGNADDVIERLDKGLLDFGLIIEPAPKQKYSYLTLPVVDTWGLITVKDHPLATKN VITAADLKEEPLFISRQAQVPSQLSDWLEASLDQFRIVGTYNLLYNASLMVEAGLGSALS IDGILETKQTNLRFIPLYPALTAKISLIWRKNTVLSTAAALFLEQIKKSIQRPE >gi|307679312|gb|GL456415.1| GENE 18 17679 - 18260 708 193 aa, chain + ## HITS:1 COG:lin0451 KEGG:ns NR:ns ## COG: lin0451 COG0110 # Protein_GI_number: 16799527 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Listeria innocua # 1 189 1 189 189 195 54.0 4e-50 MLTKNLQELIATGSIDKDEPLFQLIHQIQEENSRYLIELNQQAYTHNEVRNLLATIIQDK IDETVTILLPFYTDFGRNIHFGKNIFINRAAMFVDLGGIIIEDNVLIGPRVNLLSVNHPE LPMKRRGVLLAPITIKKFAWLGAGVTVLPGITIGENAIVAANATVTKDVPANAIVAGTPA KIIRWIQEDKEEI >gi|307679312|gb|GL456415.1| GENE 19 18260 - 18997 907 245 aa, chain + ## HITS:1 COG:lin0452 KEGG:ns NR:ns ## COG: lin0452 COG4221 # Protein_GI_number: 16799528 # Func_class: R General function prediction only # Function: Short-chain alcohol dehydrogenase of unknown specificity # Organism: Listeria innocua # 3 243 2 246 248 209 48.0 5e-54 MKSLSEKVIVIMGASSGIGEATARLLARKGAKLVIAARRQERLIAIKKELPEATILVQQA DVTKEEEVQRVIKLTMEKYGRIDVLFNNAGVMPTAPLIEAPKGEWRQMLDINIMGVLNGI AAVLPIMVEQKSGQIIATDSVAGHVVYPDSAVYCGTKFAVRAIMEGLRQEQRENNIKSTI ISPGAVQTELYQTISNRVVAETLHLEQLSWGLKAEDIAQAVVFAIDTPDRMSISEMVVRP TTQTI >gi|307679312|gb|GL456415.1| GENE 20 19037 - 19105 79 22 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIVRFLQNLEFDIYLFVGLLYD >gi|307679312|gb|GL456415.1| GENE 21 19178 - 20491 1633 437 aa, chain + ## HITS:1 COG:BH0608 KEGG:ns NR:ns ## COG: BH0608 COG2252 # Protein_GI_number: 15613171 # Func_class: R General function prediction only # Function: Permeases # Organism: Bacillus halodurans # 5 435 1 433 434 416 59.0 1e-116 MKEKISSYFELEQLNTNMKREMLAGFTTFISMAYILFVNPTVLGASGMDEGAVFTATALA SALGCILMGVLAKYPIATAPALGINAFFAYSVSVGMGIPWQTTLAGVFVASLIFILITIF KLRELIIDAIPADLKFAISGGIGLFIAFLGLSQGGLIVANDATLVGLGPLNVGSTWVTIV GLVVTAILLVRRVPGGIFIGMAISTIVGLATGVIPMPDKIISSAPSLEPTFLVALGHVKD INTIQMWVVVLTFLLVTFFDTAGTLVGLANQAGFMKDNKMPRVGKALAADSTAMLAGSLL GTSPVGAYVESSAGIAVGGRSGITAITTGILFIFSLLFSPLLAVVTSQVTAPALIIVGVL MAQSLSKIKWNEMEIAIPSFLILLGMPLTYSISDGIALGFIFYPITMIAAKRGKEVSPIM YGLFFVFVGFMWILNAQ >gi|307679312|gb|GL456415.1| GENE 22 20650 - 21864 1659 404 aa, chain + ## HITS:1 COG:SP0881 KEGG:ns NR:ns ## COG: SP0881 COG0301 # Protein_GI_number: 15900764 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis ATP pyrophosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 404 1 404 404 538 66.0 1e-153 MKYTEIMVRYGELSTKGKNRKTFIMQLAQNVKRALADFPALKIHADRDRMHILLNGEDSE EVIPKLSKVFGIQNFSPSIRIEKEMPAIRAMVQEVVREVYTPGKTFKITAKRSDHSFELD SNGLNQELGGAVIEAIPEIQVQMKKPDINLRIEIRKDAAYLSYETIRGAGGLPVGTSGRG MLMLSGGIDSPVAGYLAMKRGVEVEAVHFASPPYTSEQALQKAKDLAEKLVPYVGTIQFI EVPFTEIQEEIKRVVPQGYLMTITRRLMLRLTDAIREMRKGLVIINGESLGQVASQTLQS MVAINEVTSTPIIRPVVSMDKTEIIEIAEKIDTFELAIQPFEDCCTIFAPPQPKTRPRLD KAQEYEARLDLEGLMARALEGLKITEISAETAKDKQEDEFADFL >gi|307679312|gb|GL456415.1| GENE 23 22006 - 22641 571 211 aa, chain + ## HITS:1 COG:lin2178 KEGG:ns NR:ns ## COG: lin2178 COG2344 # Protein_GI_number: 16801243 # Func_class: R General function prediction only # Function: AT-rich DNA-binding protein # Organism: Listeria innocua # 1 203 8 210 215 218 52.0 7e-57 MPKATAKRLPVYLRYLKMLGDSGVKRIKSREFSEMIQIPSATIRRDFSHVGELGRSGYGY DVPYLIEVFSNILNTQEEKRIALIGCGNLGKALLKNNFRRNENLNIVCAFDNDSALVGTT INGLLVHDMSELEAFVRQEGVTVAISTVPSHHAQKAIDKIVQAGVTAILNFAPDRVSVPA NVSVQYIDLTTELQTLIYFNETFSLANSPKQ >gi|307679312|gb|GL456415.1| GENE 24 22705 - 23193 683 162 aa, chain + ## HITS:1 COG:BS_ytgI KEGG:ns NR:ns ## COG: BS_ytgI COG2077 # Protein_GI_number: 16080001 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Bacillus subtilis # 3 162 4 165 167 147 48.0 1e-35 MNVTRKGHVLELTGEQPEVGTKAPVFSLKNLNNQEINLADYKGKTVLISVVPDIDTRVCS LQTKRFNQEAAKLDDVQIITISNNTVEEQANWCAAEGVEMEMLHDTEDSFGAAYGLYIPE MGRLARAIFVIDPEGTLVYEEIVSEVSSEPDYQQALEAAKKV >gi|307679312|gb|GL456415.1| GENE 25 23586 - 26228 2919 880 aa, chain + ## HITS:1 COG:SPy1568 KEGG:ns NR:ns ## COG: SPy1568 COG0525 # Protein_GI_number: 15675460 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Valyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 7 880 4 880 882 1315 72.0 0 MSEEKNLPTKYQPTEIEAGRYQKWLDQDLFKPSGDKKAKPYSIVIPPPNVTGKLHLGHAW DTTLQDMIIRQKRMQGFDTLWLPGMDHAGIATQAKVEEKLAQQGISRYDLGREKFVDQVW EWKEEYASHIREQWAKMGLSLDYSRERFTLDEGLSEAVRKVFVSLYEKDLIYRGEYIINW DPKAKTALSDIEVIHKDIEGAFYHMSYPLSDGSGVVEIATTRPETMLGDTAIAVHPEDER YQELIGKTVVLPLVDKEIPIIADDYVDMEFGTGVVKITPAHDPNDFEVGNRHDLPRVNVM NEDGTMNELAGKYEGMDRFAARKAIVSDLKELGRLIKIETMNHSVGHSERTGVVVEPRLS TQWFVKMGPLAEKAMKNQETEDAVEFYPPRFNQTFLRWMENVHDWVISRQLWWGHQIPAW YHKETGEMYVGMEEPADSENWVQDSDVLDTWFSSALWPFSTMGWPDEASEDYQRYFPTST LVTGYDIIFFWVSRMIFQSLEFTGERPFQNVLIHGLIRDEQGRKMSKSLGNGIDPMDVIE KYGADALRWFLSNGSAPGQDVRFSYEKMDASWNFINKIWNASRFVIMNVEGMTAADIDFS GEKTVADRWILTRLNETVARVTELFDRFEFGEAGRQLYNFIWDDFCDWYIEMSKEILYGD NEAAKQTTRSILVYTLDQILRLLHPIMPFVTEEIWEKIPHQGESLVVAEYPVVHEEFNDE AAARGMEVLKEVIRSVRNIRAEVNTPLSKPITLLIKTNDTEVEEFLTANTSYLERFCNPE ELVISREIEAPELAMSAVLTGAELFLPLAGLINIEEEIARLEKELDKWTKEVKRVQGKLS NERFVSNAPDEVVEAERAKEKDYLEKQEAVKERIAQLRSI >gi|307679312|gb|GL456415.1| GENE 26 26274 - 26873 449 199 aa, chain - ## HITS:1 COG:SP1720 KEGG:ns NR:ns ## COG: SP1720 COG0398 # Protein_GI_number: 15901553 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 7 199 13 204 205 126 36.0 3e-29 MTNQKKFLNGLIRWLPLVGLVLFFGLILWGYSRGIFHSVASLQAFIKQFGNYAVLCFILL QIVQVIIPILPGGISSVAGMLMFGNLQGLLYSYLGLIIGEFIGFLLVRYYGRSFVKIILS PNKYKKFEEILDKNEHNVKKLLIFTMLVPFAPDDIVCLVAGITDISLKEFMKIVLLLKFW SVATYSYLMLYLFQLFGKL >gi|307679312|gb|GL456415.1| GENE 27 26866 - 29430 2080 854 aa, chain - ## HITS:1 COG:SP2231 KEGG:ns NR:ns ## COG: SP2231 COG4485 # Protein_GI_number: 15902035 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 12 851 14 850 850 210 26.0 8e-54 MKNKSKLLWLGSFFLPFLLLLLVWMTLQLAPFGDNNLLVSDLGTQYMPFLSFLKRSFHEG ITTFYSFSNEIGESIVPLAAYYLLSPFNVLAFFFPYEQLPIAILWIITLKLALMGTTMFS YLKYTYQKVDGTTLLFSTSYSFCGFVTVYSQNFMWLDALILFPLILLGLQRLWDQRKWGL YSITLFLAIVTNYYMGYMICLFAVLYSIYWFFKKNTKAHAIRQFFKQSPLFILVSFLTGT ATSFLLLPAAEGMLYTKKADFDVSTFFLTPKFNTSFFSQLGLGSINYELRLDHLPTVFAG LFVTLLCVAYFQTKQIALKERIASAILLFILFLSFWLEAFNTVWHMFQSPAGFPYRNVFI FSFLLIVFAYEVWLKKVTIPWTAPIIFSLLLVIGYGSLYYGPQKNLLISINYLWLSLLFI WLIFFCLRLAHKKALRNYVVVALFLLVSTELTTNFWISFKHMPFGSQATFAQDYRKHSQL IDEKMASAPELYRMKQVIPSKETGFREINNGYNNPLLYGYAGVSSYTSTLTATTQDTLSA LGLYRKNDRRIAYVDNSQLTNLLLNVKYDFLPIEKPTSEKLLKTVGSTKIMENDEAIGMG FLAPTALTKLKLAKNNPLDAQEELLQTLVPTDKPYFKTASLINEPHHTNETIEATFKVNS TGDLHLYIPNLKWKKVTQLKVNQQVISTPIYIATNQLFNLGHFEKGTTVTLSLTAEQVVD LTNWQLQTLDQTAFNRAVDKLRQQALHVNATKKGHLNGALNVPGNDTQLLYTSIPYDQDW QVKSSLQKEPLKTQRILGGFLAVEVPAGKQQLTFAYHPRMIYLGTAVSGTILLGTAGYLG FKKYRRKRQEATHD >gi|307679312|gb|GL456415.1| GENE 28 29679 - 31001 1467 440 aa, chain + ## HITS:1 COG:L0177 KEGG:ns NR:ns ## COG: L0177 COG0285 # Protein_GI_number: 15673139 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Lactococcus lactis # 3 430 1 423 427 446 53.0 1e-125 MQLTIEEAIEWIHSRLPFGSRPGLDRINALLEKIDHPENKVPTIHIAGTNGKGSTVTYLR CLLEEMGLKVGTFTSPYIESFNERIAINGQPISDEQLITYVEKYQPIIKELDQITEVAGI TEFETLTGMALDYFVNEQVDIAVVEVGLGGLLDSTNVVKPLLTGITTIGKDHTEILGETI AEIAYQKAGIIKEKVPVVTGNICADALAVIEKVAQEKQSPIFRFGKEYQVEYLHPDTQWG EVFNFYGEMGKLTKIKVPLLGRHQVENAAVAIQLFDKYCQLQHLPFKERDITQGLAKAQW PARMERLSDEPLIVLDGAHNDHAVKRLVENLRKEFPQHTIHILFSALATKDVDEMIQDLK QVPNAHLYLTSFDYPKAIALTEMEKYEDDLTEIVSLWQFGLGEILEKMSTDDLLLVTGSL YFVSQVRELLLTIGGNDEEI >gi|307679312|gb|GL456415.1| GENE 29 30988 - 31644 752 218 aa, chain + ## HITS:1 COG:CC2096 KEGG:ns NR:ns ## COG: CC2096 COG0637 # Protein_GI_number: 16126335 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Caulobacter vibrioides # 2 218 5 218 221 150 36.0 1e-36 MKKFDGVIFDMDGLLFDTELIYYTSTQKVADAMGLPYSKEVYLDYVGISDEEVQENYRRI YASYGHDTVEEFIRRSYDDTLQEFRSGNVPLKPGVVEFLDFLDDQKIPRLVASSNVRPAI EMLLSHAGIQDRFVGIVSAEDVKRAKPDPEIFQKARQLLGTEAPKTLIFEDSFHGVSAAH SAGIPVIMVPDLLQPTEVIQEKTLHVLESLHQAPHYLK >gi|307679312|gb|GL456415.1| GENE 30 31700 - 32251 524 183 aa, chain + ## HITS:1 COG:BS_ysxA KEGG:ns NR:ns ## COG: BS_ysxA COG2003 # Protein_GI_number: 16079856 # Func_class: L Replication, recombination and repair # Function: DNA repair proteins # Organism: Bacillus subtilis # 6 183 8 185 231 173 47.0 1e-43 MQVSDLFIREMPSDCLPRERLLAIGEKALSNQELLAILLRTGSKEADVMTVAATLLKQFK QLSYLQQATLNELMAIKGIGQVKAIELRAAIELGCRIYQSSQIKFGKVTSSQQVAQRLLQ EMKGLQQEHLICIYLNTKNDIIQQKTIFKGSLNQSIAHPREIFREAVKYSSARILLAHNH PSG >gi|307679312|gb|GL456415.1| GENE 31 32273 - 33640 959 455 aa, chain - ## HITS:1 COG:RSc3171 KEGG:ns NR:ns ## COG: RSc3171 COG1961 # Protein_GI_number: 17547890 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Ralstonia solanacearum # 6 293 14 325 462 140 31.0 6e-33 MANEIKQVALYIRVSTDQQAKHGDSLDEQQHTLNEYVRQQGNMRVFKTYIDDGISGQKLY RDEFQKLLDDVKKGRIDTILFTKLDRWFRNLRHYLNIQEILDKNNVTWLAVTQPFFNTET AMGRSFVNQSMGFAELEAQMTSERIRAVFDNKIRKGEVVSGKVPLGYEIKDKHLVPNEKA EIVKEIFQYYLETGSMRATVRHLENHFSMTRDYQSVRQMLTNRKYIGELRDNKNFCEPII DRDVFERVQLQLSKNIRMNKKRDYMFTGLLVCSECGCNYSATAVISRYVRKDGTTNPNER HLYRCTKNRNNVKKCSNKKGIYETTLENFLLENIEKQAEELSVKMQQEPEVKKTKNTNDK IKKKIDRLKKAYLNEVITLEEYKKDREELEALLIPERDNKIAKIDLNSLHNYSTAEFRDG YKQLTISEKSSLWRQVIKNIVVYPDGNLKINFLGY >gi|307679312|gb|GL456415.1| GENE 32 33750 - 34181 382 143 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|307290162|ref|ZP_07570081.1| ## NR: gi|307290162|ref|ZP_07570081.1| conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX2141] # 1 143 7 149 149 244 100.0 2e-63 MKKIAMLGLVVISIISLAACTDSEVTKVDYDKTNNSIVETDSHAKAEFATIAEKQITKNY AIDNFKIDLSSIKVNQFPDEINADTGEVYKNVMNGGGKFTFQDKIYDFSLIYSKKDESKY TVLYLYSPLDKTKTMEIPLKSDQ >gi|307679312|gb|GL456415.1| GENE 33 34269 - 34613 359 114 aa, chain - ## HITS:1 COG:no KEGG:EF2853 NR:ns ## KEGG: EF2853 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 114 1 114 114 159 78.0 3e-38 MKSIKELVEEYNVELVFTTLHKKACFESEHGVIFVNQNLSTEEQEEAIYHEFKHVKDHAD LMALYNIPIFRSKMEAEAEHYMFECLIEKNDGQFNYSNVITHYNLKMGQETYLK >gi|307679312|gb|GL456415.1| GENE 34 34631 - 34963 344 110 aa, chain - ## HITS:1 COG:lin2607 KEGG:ns NR:ns ## COG: lin2607 COG1396 # Protein_GI_number: 16801669 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 1 67 1 67 107 69 44.0 2e-12 MTAFDRIKKITDRRGISINELENRVGISQNVLYGWKKKTPGGENLTKVAKYLNISTDYIL GIVDNPEPFVEKKTDDLDDVLDNVMSFDGEPLDDHDREVIRAYLKGRFGK >gi|307679312|gb|GL456415.1| GENE 35 35284 - 35460 286 58 aa, chain + ## HITS:1 COG:no KEGG:EF2849 NR:ns ## KEGG: EF2849 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 58 1 58 58 83 87.0 2e-15 MSQDLAIDVRAALIRAGKNQSWLAKQLGISSPYLSDILHGRRRSEEQVQKIKKILNIK >gi|307679312|gb|GL456415.1| GENE 36 35471 - 35614 264 47 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307290166|ref|ZP_07570085.1| ## NR: gi|307290166|ref|ZP_07570085.1| hypothetical protein HMPREF9509_00472 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9512_00383 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9509_00472 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9512_00383 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9495_00197 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9511_00875 [Enterococcus faecalis TX0630] # 1 47 1 47 47 73 100.0 5e-12 MADQVNIDLLGQAYCNVMTRKTGITHTYTIKGKDDKKQNEKNVQKPK >gi|307679312|gb|GL456415.1| GENE 37 35586 - 35807 77 73 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307290167|ref|ZP_07570086.1| ## NR: gi|307290167|ref|ZP_07570086.1| hypothetical protein HMPREF9509_00473 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9509_00473 [Enterococcus faecalis TX0411] conserved hypothetical protein [Enterococcus faecalis TX2141] # 1 73 1 73 73 133 100.0 4e-30 MKKMYRNLNRLTYGLYIFGVGLLIGTKADGKILLIYALVLMTYNLVIELCSFNSWIADNA GEHYKRKQNREVK >gi|307679312|gb|GL456415.1| GENE 38 35808 - 36224 362 138 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256962789|ref|ZP_05566960.1| ## NR: gi|256962789|ref|ZP_05566960.1| predicted protein [Enterococcus faecalis HIP11704] hypothetical protein HMPREF9509_00474 [Enterococcus faecalis TX0411] predicted protein [Enterococcus faecalis HIP11704] hypothetical protein HMPREF9509_00474 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9495_00199 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9511_00873 [Enterococcus faecalis TX0630] # 1 138 1 138 138 244 100.0 1e-63 MNVFDVIGIVAIPLAILCFHNWVISERLSEAENRINSLTIQQMNSRPTFQDSRTGAVLPT RQQAIPPHMKTKTKSVLNEHETEMVKEVVLEKIDVLKNNLQFMQSNQRKHNSVYTLNQLE RQLTLYERIYKKMSDDEE >gi|307679312|gb|GL456415.1| GENE 39 36229 - 36318 66 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEQQIKTHFDGHQSRSITNIKFKESVPHE >gi|307679312|gb|GL456415.1| GENE 40 36311 - 36610 388 99 aa, chain + ## HITS:1 COG:no KEGG:EF2844 NR:ns ## KEGG: EF2844 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 99 1 99 99 155 93.0 4e-37 MNRKIERMIIELEKECKAQNVELLLCAANFETDQGSTAFCGSVIGLAILLQKLLGDLKEQ LSISESCDCPEYVAERAEDAANEKSMDELLTAFLRGDLQ >gi|307679312|gb|GL456415.1| GENE 41 36607 - 36831 247 74 aa, chain + ## HITS:1 COG:no KEGG:EF2843 NR:ns ## KEGG: EF2843 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 74 1 74 74 137 100.0 2e-31 MIEVRGLSDDVYELMLANAQNRIIQSIRTAAANGNTSCVVNSKGLTSTFLSQLETEGFDH VELEENKTKIFWEW >gi|307679312|gb|GL456415.1| GENE 42 36834 - 36941 193 35 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPEFDSLGARQEPPEEKEALEPTWEYDEEEENDNE >gi|307679312|gb|GL456415.1| GENE 43 36934 - 37905 1062 323 aa, chain + ## HITS:1 COG:SA1794 KEGG:ns NR:ns ## COG: SA1794 COG3723 # Protein_GI_number: 15927560 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecE pathway) # Organism: Staphylococcus aureus N315 # 1 294 1 303 306 142 35.0 7e-34 MSNDLTQMTQRSLDEQVIGNLNRLQEQGLEMPPGYSPQNALKSAFFELTNNSGGNLLQLA ANNPETKTSISNALLDMVIQGLSPAKKQCYFIKYGNKVQLMRSYFGTMAVLDRVTGGADI TPVVVREGDVFEIAMDGPDLVVAKHETSFENLDNDIKAAYVVIKLSNGKEVTTVMTKKQI DKSWSKAKTKNVQNDFPEEMAKRTVINRAAKYLINTSNDNDLFVQAAKDTLKNEFERKDV TPEREEQTAVLEEKIFTNNKKVIEQENDIEQAKPIEKDDLTKVADQILEEPVQETLDVMA GYETNQKESEADVSTIEEDDYPF >gi|307679312|gb|GL456415.1| GENE 44 37868 - 38683 566 271 aa, chain + ## HITS:1 COG:no KEGG:EF2840 NR:ns ## KEGG: EF2840 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 5 271 1 267 267 486 96.0 1e-136 MSQRLKKTIILSDENYYSTEADLHYMSVSQYKKFLECEAAALAKLKGEWTPESDPKALLV GNYVHSYFESPEIHEAFKEENKSKMFSSRKPFGLLKDFQIAEQMIERLKQEEAFLNIYQG EKEVIVTGEIGGAMWKGKIDCLNLEEKYFVDIKTTKDMHEKKWDERLNRKANFIERFGYV LQMAVYCELLRQQYDKNFLPLIAAVSKQTPSEAKLITISEEKMIYELEELKENIEHVVRV KKGEEEPISCGTCEYCRGHNKITNFTSMDDL >gi|307679312|gb|GL456415.1| GENE 45 38699 - 39487 391 262 aa, chain + ## HITS:1 COG:lin2412 KEGG:ns NR:ns ## COG: lin2412 COG3935 # Protein_GI_number: 16801474 # Func_class: L Replication, recombination and repair # Function: Putative primosome component and related proteins # Organism: Listeria innocua # 5 251 4 251 310 171 46.0 1e-42 MAIGGWIKLYRTIQDHWIWENPQYLKWWLDLIFMANHQDRKILFDGELKTVKVGERITSE KKLSERWEVSRNTVRKFLDLLVKDDMIELSRSRQNGTWYKVSNYAEYQSFSEMKKQRTEQ RSEQQAAHQTEQRTEHKQEPKEPKNLRSNNNNNKGSSIRSIWENNGFGLMSSKTMTDFDY WISDFEKIGASQKDAEQLIVKAIEIAIDANARNYNYINAILKDWEQRGFKSVDDREAARK QKKTIKQQKSNTGHSDYDDLGF >gi|307679312|gb|GL456415.1| GENE 46 39499 - 40350 541 283 aa, chain + ## HITS:1 COG:L0311 KEGG:ns NR:ns ## COG: L0311 COG1484 # Protein_GI_number: 15672431 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Lactococcus lactis # 48 279 59 288 291 107 33.0 2e-23 MQSASDGFSKMIKTLLYITPDPCPECGGNLYAWRAKNKDGSDRCPPTCMECGYKARKKAE DLETEKMFNDSLKARAINYLKYSSLYTDKNLINCRFKTYKTVDTETKLAFEIAKRATTEI LLNKPIHMILSGKSGVGKSHLAMSTAWEVLEKSNYDKRCLFISYAELLEQLKFAMNDEQA RKEITGSLMAEIKSADLVVLDDLGAELGVKQIDDRNKSTNFNNDTLNRIVEARQNKATIF TTNLTGKEMSQAYGERILSRIMSNSQGFVMKIEGTSDKRVAGI >gi|307679312|gb|GL456415.1| GENE 47 40352 - 40438 65 28 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLFLANILSVEQFYNQVNINRYKERKTA >gi|307679312|gb|GL456415.1| GENE 48 40489 - 40758 376 89 aa, chain + ## HITS:1 COG:no KEGG:EF2837 NR:ns ## KEGG: EF2837 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 89 1 89 89 122 86.0 5e-27 MPYVVKISAYLGKDGRPVANLKDAVLFEQKETAAIATIVSGGTVSEVKEAIIMPEKPNRY TAKSTKVDFKKEPIEKATKDNQAWMKGAK >gi|307679312|gb|GL456415.1| GENE 49 40761 - 40928 106 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|257078081|ref|ZP_05572442.1| ## NR: gi|257078081|ref|ZP_05572442.1| predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis JH1] hypothetical protein [Enterococcus sp. 7L76] # 1 55 1 55 55 93 100.0 6e-18 MKCVRCQDQRVIWGKDRFNYATPIPCPECNKDGKAVRAETATKERELKQCNHQQP >gi|307679312|gb|GL456415.1| GENE 50 40907 - 41371 341 154 aa, chain + ## HITS:1 COG:no KEGG:EF2836 NR:ns ## KEGG: EF2836 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 154 1 156 156 248 76.0 4e-65 MQSPTALNKRGNKVTIDGYIFDSEKEAKFYQRFVKMCGLPFEVHPRFIMHEKCEIPGGNI SSIAYSPDFIIKDHDGNWLHVIDIKNSFGAYGIDQSNKLRFRLFAMKYGHPVEAVVIRSN DFKVITQGVTKPLNEKKPFITNNFNYHWRQATNY >gi|307679312|gb|GL456415.1| GENE 51 41383 - 41988 608 201 aa, chain + ## HITS:1 COG:no KEGG:EF2835 NR:ns ## KEGG: EF2835 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 200 1 200 200 301 99.0 1e-80 MTKQVNFRPEVKKVTSKSNGNIEVLLVVSNASLKGKYESLNEFLGKTVSTTIEPETVEYK VPVNKQTNKPNVEYIVNNDGTVEVLKEEQTSLEMGDDVQEVEEVAVQVSKETIDEFIKKA TTIEWPESVTINVRGVLHRIDEGEALEEIAADHDVSVDNLINQVEIARQHFAPFADSWSK NKENIIFPEKTVEDDEEEIEE >gi|307679312|gb|GL456415.1| GENE 52 42013 - 42210 228 65 aa, chain + ## HITS:1 COG:no KEGG:EF2834 NR:ns ## KEGG: EF2834 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 65 4 68 68 96 92.0 3e-19 MLEIYYTPTSAIIADALAKTYEVVSLDKARNIAKKFKASLKQKTDLYVIESILIDAGYKK ESVNL >gi|307679312|gb|GL456415.1| GENE 53 42262 - 43512 758 416 aa, chain + ## HITS:1 COG:SP1336 KEGG:ns NR:ns ## COG: SP1336 COG0270 # Protein_GI_number: 15901190 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Streptococcus pneumoniae TIGR4 # 4 378 5 407 407 413 51.0 1e-115 MKFLDLFAGIGGFRLGMESAGHECIGFCEIDKFARTSYKAIHDTTGEVEMHDITTISDEF IRGIGSVDVICGGFPCQAFSIAGKRKGFEDTRGTLFFEIARFASILRPRYLFLENVKGLL NHEGGATFETILRALDELGYDVEWQVLNSKDYVPQNRERVFIIGHLRGKCTRKVFPFERK NGTTAKNNIKPINNSKKTRELLNFDSTNRFYDVNGISPCLNTMQGGDREPKIAVVGNVNP SGSGMNGQVYSSDGLAPTLTTNKGEGAKIAIPVLTPDRVEKRQNGRRFKDDGEEMFTLTA QDRHGIMVKEATSKGYAEALPGDSANISHPNSNTRRGRVGKGIANTLLTGEEQAVVTNNF RIRKLTPRECWRLQGFPDWAFDKAKEVNSDSQLYKQAGNSVTVPVIADIASRLESE >gi|307679312|gb|GL456415.1| GENE 54 43518 - 43922 373 134 aa, chain + ## HITS:1 COG:no KEGG:CKR_2917 NR:ns ## KEGG: CKR_2917 # Name: not_defined # Def: hypothetical protein # Organism: C.kluyveri_NBRC # Pathway: not_defined # 4 134 6 139 139 73 39.0 2e-12 MIPKFRAWDKRENTMRDVAVLHFTKGGKVNSIEYWKTPSELKSYHVRNLVLMQSTGLKDL NGVEIFEGDIVKVTVNNYGTGERFEQIDKVVYEDCRFCFNDGFYYSETIKYSGYENKEVI GNVYENPELLEGTE >gi|307679312|gb|GL456415.1| GENE 55 43919 - 44278 361 119 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307290181|ref|ZP_07570100.1| ## NR: gi|307290181|ref|ZP_07570100.1| conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX0411] # 1 119 1 119 119 226 100.0 3e-58 MSELEKMGNILMETALNFTHPIFEDTYPEWGTVCNIGEELVRMAKPEFSENQQVVLDWLK ESCKLNGLREVIEIMGFLSTTGGKMKYKQVAYAYGDLNDDELAQVLQSFSQWVWEQEEK >gi|307679312|gb|GL456415.1| GENE 56 44279 - 44557 374 92 aa, chain + ## HITS:1 COG:no KEGG:EF2120 NR:ns ## KEGG: EF2120 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 92 89 180 180 130 83.0 2e-29 MKFYEMKEPYFALIAAEDEKQCLKLYKDIVCDVEDEKEFFEEIKTIDKYEAFKMLAKSHT EEGDKTGAEEAFNQLENLEEKGEVLLIDSGLL >gi|307679312|gb|GL456415.1| GENE 57 44569 - 44787 272 72 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307275418|ref|ZP_07556560.1| ## NR: gi|307275418|ref|ZP_07556560.1| hypothetical protein HMPREF9521_01045 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9509_00489 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9509_00489 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9521_01045 [Enterococcus faecalis TX2134] # 3 72 1 70 70 138 100.0 1e-31 MSMSIQPGDKVKYIGEGVPQYTDKFLVVKTVLVNGLILEFPEKDKRKVALEGGGIWNMNS LVCGFNEVEESC >gi|307679312|gb|GL456415.1| GENE 58 44784 - 44966 183 60 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307275419|ref|ZP_07556561.1| ## NR: gi|307275419|ref|ZP_07556561.1| hypothetical protein HMPREF9521_01046 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9509_00490 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9509_00490 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9521_01046 [Enterococcus faecalis TX2134] # 1 60 1 60 60 104 100.0 2e-21 MNKRQKNKQFKKWLIKNGYSEDGNVRCVECGKKIDMNDKWQLTYQACDSTCYGKAINAYP Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:35:41 2011 Seq name: gi|307679311|gb|GL456416.1| Enterococcus faecalis TX0411 genomic scaffold Scfld47, whole genome shotgun sequence Length of sequence - 20755 bp Number of predicted genes - 15, with homology - 15 Number of transcription units - 6, operones - 3 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 463 - 493 1.1 1 1 Op 1 3/0.000 - CDS 499 - 1995 2148 ## COG1190 Lysyl-tRNA synthetase (class II) - Prom 2024 - 2083 4.1 - Term 2046 - 2082 4.1 2 1 Op 2 2/0.000 - CDS 2089 - 3102 554 ## PROTEIN SUPPORTED gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase 3 1 Op 3 1/0.000 - CDS 3099 - 3995 1091 ## COG1281 Disulfide bond chaperones of the HSP33 family - Prom 4093 - 4152 5.5 - Term 4089 - 4152 23.2 4 2 Op 1 11/0.000 - CDS 4157 - 6319 1329 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 - Prom 6352 - 6411 2.2 5 2 Op 2 10/0.000 - CDS 6413 - 6958 691 ## COG0634 Hypoxanthine-guanine phosphoribosyltransferase 6 2 Op 3 2/0.000 - CDS 6977 - 8365 1002 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control - Term 8384 - 8437 9.0 7 2 Op 4 . - CDS 8451 - 8930 361 ## PROTEIN SUPPORTED gi|218290661|ref|ZP_03494752.1| RNA binding S1 domain protein 8 2 Op 5 . - CDS 8975 - 9454 462 ## EF0261 hypothetical protein - Prom 9482 - 9541 5.5 - Term 9634 - 9700 10.0 9 3 Op 1 1/0.000 - CDS 9709 - 9972 366 ## COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) 10 3 Op 2 2/0.000 - CDS 9987 - 11576 1428 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 11 3 Op 3 7/0.000 - CDS 11592 - 15131 3739 ## COG1197 Transcription-repair coupling factor (superfamily II helicase) 12 3 Op 4 . - CDS 15151 - 15717 684 ## COG0193 Peptidyl-tRNA hydrolase - Prom 15785 - 15844 8.3 + Prom 15933 - 15992 7.5 13 4 Tu 1 . + CDS 16053 - 17036 1207 ## COG0039 Malate/lactate dehydrogenases + Term 17099 - 17157 20.0 14 5 Tu 1 . - CDS 17263 - 18753 1684 ## COG1012 NAD-dependent aldehyde dehydrogenases - Prom 18784 - 18843 14.4 - Term 18927 - 18987 12.7 15 6 Tu 1 . - CDS 19031 - 20536 1642 ## COG1705 Muramidase (flagellum-specific) - Prom 20654 - 20713 8.3 Predicted protein(s) >gi|307679311|gb|GL456416.1| GENE 1 499 - 1995 2148 498 aa, chain - ## HITS:1 COG:BS_lysS KEGG:ns NR:ns ## COG: BS_lysS COG1190 # Protein_GI_number: 16077150 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Lysyl-tRNA synthetase (class II) # Organism: Bacillus subtilis # 1 498 1 497 499 709 72.0 0 MAEEQQAHLEDLNDQMLVRREKMEALREEGIDPFGKRFDRTHNSAELHEQYDNHTKEELS EMNTEVSVAGRMMTKRGKGKAGFAHLQDREGQIQIYVRKDQVGDEAYELFKHADLGDFFG VTGQIMKTNTGEVTVKAQTITLLTKALRPLPDKYHGLTNVEQRYRQRYLDLISNKESFDR FMKRSQIISEIRRYLDGNGYVEVETPVLHNEAGGAAARPFITHHNALDMDLYLRIALELH LKRLIVGGMEKVYEIGRVFRNEGIDTTHNPEFTMLEAYTAYTDYQDVMDLTEGIIRNAAE KVLGTTDITYDGQAVDLGSPFKRLHMVDAVKEQTGVDFWQEMTIEEARALAKEHNVEITD AMTVGHIINEFFETFVEDTLQQPTFIYGHPVAVSPLAKKNPEDGRFTDRFELFIIGKEFA NAFTELNDPIDQRERFEEQEKEREQGNDEAHGVDEDFIEALEYGLPPTGGLGIGIDRLVM LLTDAQSIRDVLLFPTMR >gi|307679311|gb|GL456416.1| GENE 2 2089 - 3102 554 337 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase [Haemophilus influenzae R2866] # 1 327 22 347 353 218 37 3e-56 VGGKTMWKIGDVEIPNRVVVAPMAGISNAAFRVTVKEFGAGLVVCEMISDKGIKLRNKKT LEMLYIDEREYPLSVQIFGGDKETLVEAAKFVEENTQAAIIDINMGCPVNKIIKAEAGAK WLLDPNKVHEMVHAVSSAVSLPVTVKMRTGWDEDHLYAVDNALAAEQAGASAIAMHGRTR VQMYEGTANWDVLKEVKKHLTIPFMGNGDVKTPEDAKRMLEYVGADGVMIGRAALGNPWM IQRTKEYLETGELMPEPSPAEKINIAKVHLQRLVDLKGEKIAVREFRQHASYYLKGISRA AKVKVAINQVETQQAVVDLLDAFVEKISKVAVTTIEE >gi|307679311|gb|GL456416.1| GENE 3 3099 - 3995 1091 298 aa, chain - ## HITS:1 COG:BS_yacC KEGG:ns NR:ns ## COG: BS_yacC COG1281 # Protein_GI_number: 16077139 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Disulfide bond chaperones of the HSP33 family # Organism: Bacillus subtilis # 3 293 2 291 291 351 58.0 1e-96 MEDYLVKALCYKGSIRAYAISATETVSEAQRRHDTWSSSTAALGRTLIGALLLGATLKGD DKLTVKVQGNGPAGAIIVDSNGRGETKGYIKNPHVSLKLNATGKIDVRGAVGNEGIFTVI KDLGLKETFSGQTPIVSGEIGEDFTYFMAVSEQVPSAIGLGVLVDTDESVKAAGGFMIQV MPGADESTIDFIEQRLAEVPPISQLLENGETPEQVLYRLLGEDEVEILEKMPVQFKCDCS KEKFATALIAVGIDELNAMIDEDHGAEAVCQFCNNKYHYSEEELIELRDEAIRNTKQK >gi|307679311|gb|GL456416.1| GENE 4 4157 - 6319 1329 720 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 122 661 94 635 636 516 50 1e-146 MNKKNNGMKNGLYYVLVVLAMVMVVYFIFGNNNQQSPDIDYSTFQQQLEDGKVKDMTIQP TNGVYRIEGQYKEKQEVKDTGGLSLWGSTQASSKGFTTTVLPSDTTLAGIQDAAQNNKVK LVVKEQSTSGAWLSLLFSFLPLVIIFFFFYMMMSQQGGGGGGGGGGRGMNFGKSKAKEAD KKANRVRFSDVAGAEEEKQELVEVVEFLKDPRRFAELGARIPAGVLLEGPPGTGKTLLAK AVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFETAKKNAPAIIFIDEIDAVGRQRGAG MGGGHDEREQTLNQLLVEMDGFDGNEGVIVIAATNRSDVLDPALLRPGRFDRQILVGRPD VKGREAILRVHAKNKPLADDVDLKVVAQQTPGFAGADLENVLNEAALVAARRNKKKIDAS DVDEAEDRVIAGPAKKDRVINKKEREMVAYHEAGHTIVGLVLSRARVVHKVTIIPRGRAG GYMIALPKEDQFLMTKEDMFEQIVGLLGGRTAEEIIFGVQSTGASNDFEQATGIARSMVT EYGMSDKLGPVQYEGNHQVFVGRDYGQTKAYSEQVAFEIDQEVRRILMDAHTKAHEIIEA HREQHKLIAEKLLEYETLDAKAIKSLFETGKMPEGADSDYPSEKEAQTFEEAKRALEEKE AQKQVEEKQDFEEAKKELHDEAEEVKVESEQTEKEVQSEEKKDSDSNSEYDRNNYEDRYK >gi|307679311|gb|GL456416.1| GENE 5 6413 - 6958 691 181 aa, chain - ## HITS:1 COG:lin0251_2 KEGG:ns NR:ns ## COG: lin0251_2 COG0634 # Protein_GI_number: 16799328 # Func_class: F Nucleotide transport and metabolism # Function: Hypoxanthine-guanine phosphoribosyltransferase # Organism: Listeria innocua # 2 178 1 177 179 255 74.0 3e-68 MIEKDIEKVLISKEEILAKSAELGKQLTEKYQGKNPLVVGILKGAVPFMADLTREINTYL ELDFMDVSSYGNATVSSGEVKIVKDLDTNVEGRHILIVEDIIDSGRTLAYLVDLFRYRKA ASVKIVTLLDKPEGRVVDIKADYVGFDVPNEFVVGYGLDYAETYRNLPYIGVLKPEVYES N >gi|307679311|gb|GL456416.1| GENE 6 6977 - 8365 1002 462 aa, chain - ## HITS:1 COG:SPy0013 KEGG:ns NR:ns ## COG: SPy0013 COG0037 # Protein_GI_number: 15674260 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Streptococcus pyogenes M1 GAS # 2 443 4 407 428 201 31.0 2e-51 MFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTLMEQVAEKEQLQLVVAHVNHQLRE ASAQEAQYLATYCQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMT AHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYPKEELYQFAQRQAFV YFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSE AVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQ PQGSVMLEQQWQLAKSYDWLCLEQKQVALREEVTHLLVPGAGIYLSETEWLGLIATDKPF PLPEEINQWTGQLLAIPLTTATPLTVRHRQSGDRITLKPGFTKKLSRVFIDQKVPNEARE SAWVITDEQEEIIWVPKFANSYLSIPLETDKIHYRLLFKTKE >gi|307679311|gb|GL456416.1| GENE 7 8451 - 8930 361 159 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|218290661|ref|ZP_03494752.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius LAA1] # 1 159 1 134 134 143 49 8e-34 MSIEVGAKLPGKVSGITNFGAFIDLGEGKTGLVHISEVSNGFVKDIHDVLTVGDEVTVKV TSVGDDGKIGLSIRKAQEPAEGQQPKREFQRRENNYENRDRNPRAGGKKPFNKPQANNNN NKQDFDSLMSSFLKDSDDRLSSLKRNTEGKRGGRGGRRG >gi|307679311|gb|GL456416.1| GENE 8 8975 - 9454 462 159 aa, chain - ## HITS:1 COG:no KEGG:EF0261 NR:ns ## KEGG: EF0261 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 159 1 159 159 199 100.0 2e-50 MGKNEKNSKKVAALENDYTKEQYVEFQKQQKQLIFRRRRLAAIFLVAFIIFAFSGIQLMK DYHRLGAFKQERADAIAESVAVDKKVKDLKKDVALLKDDDYVAKLARSRFLLSKEGEQIY PTPEQMKKTQTSGAEESKSSSEKNSQSQSSTETTKSSAE >gi|307679311|gb|GL456416.1| GENE 9 9709 - 9972 366 87 aa, chain - ## HITS:1 COG:L1001 KEGG:ns NR:ns ## COG: L1001 COG1188 # Protein_GI_number: 15671997 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) # Organism: Lactococcus lactis # 1 87 17 103 105 97 71.0 7e-21 MRLDKFLKVSRIIKRRTVAKEVADKGRIQINGVLAKSSSTVKIGDLVKIQFGNRILEVEV LQLNDSTKKEDATKMYEIKSETRVSEE >gi|307679311|gb|GL456416.1| GENE 10 9987 - 11576 1428 529 aa, chain - ## HITS:1 COG:lin0247 KEGG:ns NR:ns ## COG: lin0247 COG2244 # Protein_GI_number: 16799324 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Listeria innocua # 1 527 1 524 529 296 36.0 6e-80 MAQKEMQRMMQGAVVLTIASFIAKVLSAFYRVPFQNFVGDEGFYVYQQVYPIYGIAMTLA LSGLPQFISKIVAEQPDIRSQKQVLRQLYPYVLWLAIACWAFFFFGSQEIAISMGDAALQ PLMEVVSFTFLLVPILSFYRGNFQGHLLMVPSGISQVMEQFVRVGVILVAALSYHYFGGS IYQTGTVAMSGALAGGVLAVLVLWYYNRKILSGSTEYLHQWKIMPQTTVLFKRLMIEGGL VSLYSAFLILFQLIDSFKVKNALMLFGLSDLAAKVDKGVYDRGQPLVQLGLVIALALSST FLPGLTKYFMKKDRQQFLQVAKIFLRLTTTLASAASIGLMMLLPYMNFTLFKDYKGNDVL GVYVLSIAFMAIIQTYQSIEQSRNRFKGPLVAAGVGLLVKLLTTGFFTIRWGTLGASWST ILGLLATLFVLVRQSDAAINCFVRERNFLKKLLLSLAIMMLSLLVYQGIISILFQGVHHR SQAFFVTVLGVAVGGTVFISTIIKLELFTIREWLSLPYGAKILRMRQKK >gi|307679311|gb|GL456416.1| GENE 11 11592 - 15131 3739 1179 aa, chain - ## HITS:1 COG:lin0246 KEGG:ns NR:ns ## COG: lin0246 COG1197 # Protein_GI_number: 16799323 # Func_class: L Replication, recombination and repair; K Transcription # Function: Transcription-repair coupling factor (superfamily II helicase) # Organism: Listeria innocua # 27 1166 28 1168 1179 1182 53.0 0 MNIIERISQTEIAKSWRSQLMTTGTRQLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLY YANQLVDDFLNILPSEQVHLFPVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVP VAGLRKYLPTKETWQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIV DVYPLNAEYPVRVELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMT RLQDALEKRLATAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLYQQKTTLLDYL PENSLLFVDDYSRMMETEREIAREEAEWQTLKIEEMRVFSEQTFGVDFHDQLRKTARNTT FFSLFQKGMGNLRFQEVHNFQYRSMQQFFGQMPLLKAEVDRWQKQNQTVVVFVPTKERIQ KVEELFQDFDIPSVVSNWDQLLDGHVQIVQGALQTGFELPKNKLVAITEKEIFHTTTKKR ARRQTISNAERLKSYSDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDDKL FIPVTQLNLIQKFVASESKTPKINKLGGSEWTKTKRKVASKIEDIADDLILLYATRESEK GYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVAL RAAFKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFPVEIGLLSRFRTKKQQNETIEKI KHGQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPI PRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRV DTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPN ANTLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTEL GSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVARKQGKNIQDQKTSVE IDLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYEELEADLLDRFGEYPDEVAHLLTT GRIKMDGDRALLESIRKRDQKVKFVLSKIGTKTYSVEQLFEALSATSLKADLAVEKEQMT ISLKLPKDCKEAVWIQEIATFTTALRQEKYKHSQETDSL >gi|307679311|gb|GL456416.1| GENE 12 15151 - 15717 684 188 aa, chain - ## HITS:1 COG:SP0005 KEGG:ns NR:ns ## COG: SP0005 COG0193 # Protein_GI_number: 15899954 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptidyl-tRNA hydrolase # Organism: Streptococcus pneumoniae TIGR4 # 2 187 3 189 189 223 57.0 2e-58 MKVIVGLGNPGSKYKETKHNIGFITLDEIAYRQNVSFNNSNFEADIAEFFIGTEKVLLVK PLTFMNESGRSVGPLLTYFGVDEEDLIVIYDDLDLEVGKIRLRQKGSAGGHNGIKSLIAH LGTNVFPRIKIGIGRPSKNDTVIHHVLSIFPKETHEEMLLAVKKAADAALYACEGHTFVE TMNQFNGK >gi|307679311|gb|GL456416.1| GENE 13 16053 - 17036 1207 327 aa, chain + ## HITS:1 COG:SPy1151 KEGG:ns NR:ns ## COG: SPy1151 COG0039 # Protein_GI_number: 15675128 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Streptococcus pyogenes M1 GAS # 6 326 3 324 327 471 75.0 1e-133 MTAAAGNKDHQKVILVGDGAVGSSYAFALVTQNIAQEVGIIDINVPKTEGDALDLSHALA FTSPKKIYAATYDDCHDADLVVLTAGAPQKPGETRLDLVHKNLKINKEIVTTIVDSGFNG IFLVAANPVDILTYSTWKFSGFPKERVIGSGTSLDSARFRQAIAELVDVDARNVHAYILG EHGDTEFPVWSHANVAGLQIYEWVKNNPDVDEEAMVNLFFNVRDAAYTIIEKKGATFYGI AVALARITKAILNDENSVLPLSVYLEGEYGQNDIYIGAPAIINRQGVKQVIEIPLTEAEQ EKMEASASALKEVIETAFAKFEAEEAK >gi|307679311|gb|GL456416.1| GENE 14 17263 - 18753 1684 496 aa, chain - ## HITS:1 COG:FN0454 KEGG:ns NR:ns ## COG: FN0454 COG1012 # Protein_GI_number: 19703789 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Fusobacterium nucleatum # 6 496 1 491 491 622 60.0 1e-178 MSKKEINQVVASSYQLYINGEWTTGSGNKMIASYNPSNGEKLAEFVDATNADVDRAVEAA QEAFQTWKDVDVVTRSNLLLKIADLIEENQEHLAMVETLDNGKPLRETQSIDVPASADHF RYFASVIRGEEGSVKEFDKDTLSIVVKEPIGVVGQIIPWNFPLLMGAWKLAPALAAGNTV VIHPSSSTSLSLLELFKIFDQVLPKGVVNLITGRGSDSGNYMLAHPGFDKLAFTGSTEVG YTVAKAAADRLIPATLELGGKSANIIFEDANWERALEGVQLGILFNQGQVCCAGSRVFVQ SGIYDQFVEALKEKFEQVNVGFPWEKDVEMGAQINEHQLEEILKYVEIGVKEGATLITGG QRLTENGLDKGAFLAPTLLANGTNTMCVAQEEIFGPVATVIKFETEEEVIRLANDSEYGL GGAVFSQDINVALRVARGVRTGRMWVNTYNQLPAGAPFGGYKKSGIGRETHKSMLDAYTQ MKNIYIVTKEEADGLY >gi|307679311|gb|GL456416.1| GENE 15 19031 - 20536 1642 501 aa, chain - ## HITS:1 COG:SA2437_1 KEGG:ns NR:ns ## COG: SA2437_1 COG1705 # Protein_GI_number: 15928230 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Staphylococcus aureus N315 # 27 364 149 475 502 155 31.0 3e-37 MKKQFALFSTLLLLGSSMPVGAFAEGNNLVAENSSVAETTAEATTAEATETTATSETTEA TEESTTETESSTEPSESTTTESTETSGTETTDSTTDSTSTSTTESTTDSTSTSTTESTTD STSTSTTESSTTPTTTPSSSKEQPKPGTSTSESKQPAKPVTPTAPAEKPVEQPAASTPQP EIVPPVTNETVGLVEDDETFTVSKTKKTEEFIQEIGESARKVAKDKNLYASVMIAQAILE SGSGNSKLSQKPNYNLFGIKGDYKGQSVSFITYEDNGFGNLYTVEAKFRQYPTYKESMED YAKLLKNGLDSNKDFYHGVWKTEAKSYKEATRFLTGKYATDKDYHKKLNALIKTYDLTYY DKEKATVEPMESNFPAYNGKNYDTFNSYAWGNCTQYVYNRITQLGKRVDLTMGNGQDWGE TGRARGYKVSRTPKAGAAVSFPAGVLGADNTYGHVAFVEKVFKDGSILISEMNVKGLNVV STRTISADETHLMNYIVPKDK Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:35:48 2011 Seq name: gi|307679310|gb|GL456417.1| Enterococcus faecalis TX0411 genomic scaffold Scfld50, whole genome shotgun sequence Length of sequence - 10695 bp Number of predicted genes - 13, with homology - 11 Number of transcription units - 10, operones - 3 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 82 - 384 353 ## EFA0076 hypothetical protein + Term 396 - 431 3.5 + Prom 736 - 795 5.9 2 2 Op 1 . + CDS 815 - 2143 818 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair 3 2 Op 2 . + CDS 2140 - 2490 70 ## EFA0079 hypothetical protein + Prom 2658 - 2717 7.1 4 3 Tu 1 . + CDS 2750 - 2851 140 ## + Term 2900 - 2936 4.2 + Prom 2993 - 3052 4.1 5 4 Tu 1 . + CDS 3092 - 3388 287 ## EF_B0063 replication control protein PrgN + Term 3408 - 3457 3.5 - Term 3392 - 3452 18.4 6 5 Op 1 . - CDS 3490 - 3765 290 ## LSEI_A17 PrgO-like protein for plasmid replication 7 5 Op 2 . - CDS 3743 - 4672 674 ## COG1192 ATPases involved in chromosome partitioning - Prom 4742 - 4801 7.2 + Prom 4775 - 4834 11.8 8 6 Tu 1 . + CDS 4919 - 5866 627 ## EF_B0001 replication-associated protein RepA + Term 5941 - 5987 2.1 + Prom 5886 - 5945 8.1 9 7 Op 1 . + CDS 6025 - 7662 1469 ## COG4166 ABC-type oligopeptide transport system, periplasmic component 10 7 Op 2 . + CDS 7673 - 8827 769 ## COG1916 Uncharacterized homolog of PrgY (pheromone shutdown protein) + Term 8840 - 8884 12.1 11 8 Tu 1 . - CDS 8860 - 9813 684 ## EF_B0005 Cro/CI family transcriptional regulator - Prom 9957 - 10016 11.8 12 9 Tu 1 . - CDS 10437 - 10526 58 ## - Prom 10568 - 10627 2.4 + Prom 10418 - 10477 6.4 13 10 Tu 1 . + CDS 10575 - 10695 58 ## EF_B0007 pheromone-responsive regulatory protein R Predicted protein(s) >gi|307679310|gb|GL456417.1| GENE 1 82 - 384 353 100 aa, chain + ## HITS:1 COG:no KEGG:EFA0076 NR:ns ## KEGG: EFA0076 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 100 1 100 100 172 93.0 4e-42 MPVNKNGLPFYLDRKLDVIRFGVDPDNHVKEQQPFKSLVKTENPNKKERFIEKESESLTQ LGYKIVVDTVTGVNYLESPRGGITPLLDETGKVCIDKISK >gi|307679310|gb|GL456417.1| GENE 2 815 - 2143 818 442 aa, chain + ## HITS:1 COG:pli0067 KEGG:ns NR:ns ## COG: pli0067 COG0389 # Protein_GI_number: 18450349 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Listeria innocua # 6 433 6 426 426 407 49.0 1e-113 MNLTFDYTKEPSRDVLCIDVKSFYASVECVERGLDPLKTMLVVMSNSENSGGLVLAASPM AKKVLGISNVTRKNEVPDHPNLIIVSPRMKLYMKKNQEINNLYKRFVSDEDHSVFSVDES FLDVTASLTYFKCDTAYKLAKIIQRVIYNHMGLYVTIGIGENPLLAKLALDNEAKNAPGF VAEWRYEDVPKKVWPISPLTEFCGIGNRMAARLKKLGIRSIYDLAHIEPYMLKERFGIMG LQLYAHSWGIDRSFLGQKAGRPTEKSFGNSQVLPKDYANKEQIKLVLKELSDQVASRLRM ASCQTTCVSLFVGYSKGQTDKYGQNGWRRQMKVEPSNNTKVLTEHVLRLFEENYAPGVDV RNLGVSYGRLLWNKNLQLDLFSVPEEQIHETDMYFLIDKIRQKFGFKALIHASSLMEGAT AISRASLVGGHAGGTVGLGTTK >gi|307679310|gb|GL456417.1| GENE 3 2140 - 2490 70 116 aa, chain + ## HITS:1 COG:no KEGG:EFA0079 NR:ns ## KEGG: EFA0079 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 116 1 116 116 205 97.0 5e-52 MKQNRKEFSSYFSRSIKQNKPLYLLLMSSETNPFPRPVIGTFRGYAEENKIIIGEDSYSI EEIDFVCMYRHSSRIKQEERVNSNPFQGLVSPTFSKKEQKKLDEYFSDWGFRNEGI >gi|307679310|gb|GL456417.1| GENE 4 2750 - 2851 140 33 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKDLMSLVIAPIFVGLVLEMISRVLDEEDDNRK >gi|307679310|gb|GL456417.1| GENE 5 3092 - 3388 287 98 aa, chain + ## HITS:1 COG:no KEGG:EF_B0063 NR:ns ## KEGG: EF_B0063 # Name: prgN # Def: replication control protein PrgN # Organism: E.faecalis # Pathway: not_defined # 1 97 1 97 98 187 100.0 2e-46 MPRKTFVYPHPINAYIIKQLGITVEEFCELHAFSQGTVSSWITRNKKIETLPISFIYSLS LSASKTMDQVYSDLLKLQDDYLLHLERHRRTKKIIDEN >gi|307679310|gb|GL456417.1| GENE 6 3490 - 3765 290 91 aa, chain - ## HITS:1 COG:no KEGG:LSEI_A17 NR:ns ## KEGG: LSEI_A17 # Name: not_defined # Def: PrgO-like protein for plasmid replication # Organism: L.casei # Pathway: not_defined # 1 90 1 91 92 63 41.0 2e-09 MALLPTNKEKKKIGAADIEIADDINVELGKSKYTAKDRRPVQVDPPVLKTIRDLSYAKDK PMYDIVALAMDALIDTLSEEERNIYNRRIKD >gi|307679310|gb|GL456417.1| GENE 7 3743 - 4672 674 309 aa, chain - ## HITS:1 COG:pli0069 KEGG:ns NR:ns ## COG: pli0069 COG1192 # Protein_GI_number: 18450351 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Listeria innocua # 8 271 18 284 293 95 23.0 1e-19 MLVDKGVSGKVIMLTGRKGGIGKSIDNELLSIVGSQIFNKDICLIDYDQQRNTTSNISST YQISKFERSLASAITNNDWESGITKISPHLYVMAGSPGSEELNEHLSQKYPNKHDRHLAF IQPLKELRKKFDYIFVDCPPSTDNVVRAFLTAADYVIPMQELKRYAMEGTEDFIEKVLIP IVSNFEETNLQIIGILPVMFSARRESQRANYQKTVDKYGKENIFKTIVKGSDRLETYGET GVQLNDYVDRRWWAIFADIFTELEERIEYYESHGDIVGFDYTLKYADSMANKILSKGKEI EINGIVTNE >gi|307679310|gb|GL456417.1| GENE 8 4919 - 5866 627 315 aa, chain + ## HITS:1 COG:no KEGG:EF_B0001 NR:ns ## KEGG: EF_B0001 # Name: repA-2 # Def: replication-associated protein RepA # Organism: E.faecalis # Pathway: not_defined # 1 314 1 334 336 333 62.0 5e-90 MENFQFYKSKEIYREKYYQMPKVFFTNEMYKSLSNDAKIAYMLLKDRFDNSVKNNWVDSE DNIYFIYTVAELMTLLNCREGKVSKIKKELEAVNLLKQKKGRVKKINGKIETTPNLLYLG KPNVTSEDVFKINEEQNNVNPVIAKIANTEKVSDIHENPVIAKIADNLFYTSYLDTLDTL DTKKEALQQQLLLDQFSEVQEHTFLSKDSLKFIAAFSNTIQEAHEQVGTIIRAKTKVEKE YNLVLIGEDYQEEIDKCLRRVMHKIKTDSTVKSPKGLFYKSFYNLFVECALEKENVKNRD NSKGSEITLHNWLEK >gi|307679310|gb|GL456417.1| GENE 9 6025 - 7662 1469 545 aa, chain + ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 1 544 1 549 549 354 37.0 3e-97 MKKYKKFCFLGIGLLPLVLASCGTNTATKDSQDATDKKVEQVATLTAGTPVQSLDPATAV DQTSITLLANVMEGLYRLDEKNQPQPAIAAGQPRVSNNGKTYTIVIRDGAKWSDGTQITA SDFVAAWQRVVDPKTVSPNVELFSAIKNAKEIASGKQAKDTLAVKSIGEKTLEIELVEPT PYFTDLLSLTAYYPVQQKAIKEYGKDYGVSQKAIVTNGAFNLTNLEGVGTSDKWTISKNK EYWDQKDVSMDKINFQVVKEINTGINLYNDGQLDDAPLAGEYAKQYKKDKEYSTTLMANT MFLEMNQTGENKLLQNKNVRKAISYAIDRESLVKKLLDNGSVASVGVVPKEMAFNPVNKK DFANEKLVEFNKKQAEEYWDKAKKEIDLSKNTSLDLLVSDGEFEKKAGEFLQGQLQDSLE GLKVTVTPIPANVFMERLTKKDFTLSLSGWQADYADPISFLANFETNSPMNHGGYSNKNY DELLKDSSSKRWQELKKAEKLLINDMGVVPIFQVGTAKLEKSKIKNVLMHSIGAKYDYKK MRIEK >gi|307679310|gb|GL456417.1| GENE 10 7673 - 8827 769 384 aa, chain + ## HITS:1 COG:BB0416 KEGG:ns NR:ns ## COG: BB0416 COG1916 # Protein_GI_number: 15594761 # Func_class: S Function unknown # Function: Uncharacterized homolog of PrgY (pheromone shutdown protein) # Organism: Borrelia burgdorferi # 4 375 17 395 404 210 35.0 3e-54 MELVRRVFIKDKEIILVGTAHISSESAELVKNIIEEENPDVVCLEWDQSRYDKYLNPDEW SDTDIVQVIKQKRLTVLISSVIYKLIQKHLAKINDSVAGAEFFEAVSSAEKVGAKIALVD RDSQVTFKRFWRLIPLRKKALLPYAFGSVLEGAEESEEEMLKLLNSENFEPIFEQLQEAY PELWKVLLVERDQYLAQKISDQEAGKIVVVIGQAHLRGVEKNLKSNQQINIKELETLPPK LWSTKVLESIIPLIIIGLLIYSFFLGVDVGKDQIMRWGIWNGGLSALFTLLALAHPLTIV TSLVFAPLATLLPMVSVGVFSAIVEATLRKPKVRDFQTMDEDIKSLKKIYKNRVLRVFLV FVLASLGGMIGNFVGGLEMFRHLI >gi|307679310|gb|GL456417.1| GENE 11 8860 - 9813 684 317 aa, chain - ## HITS:1 COG:no KEGG:EF_B0005 NR:ns ## KEGG: EF_B0005 # Name: not_defined # Def: Cro/CI family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 7 305 6 306 313 155 28.0 2e-36 MFKIGSVLKQIRQELNYHQIDLYSGIMSKSVYIKVEADSRPISVEELSKFSERLGVNFFE ILNRAGMNTKSVNETGKEKLLISKIFTNPDLFDKNFQRIEPKRLTSLQYFSIYLGYISIA HHYNIEVPTFNKTITSDLKHLYDKRTTFFGIDYEIVSNLLNVLPYEEVSSIIKPMYPIVD SFGKDYDLTIQTVLKNALTISIMNRNLKEAQYYINQFEHLKTIKNISINGYYDLEINYLK QIYQFLTDKNIDSYLNAVNIINIFKIIGKEDIHRSLVEELTKISAKEKFTPPKEVTMYYE NYVAIENNPIPEIKEQS >gi|307679310|gb|GL456417.1| GENE 12 10437 - 10526 58 29 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFARLLRVVPVQTMRESIELFHKRVIFRK >gi|307679310|gb|GL456417.1| GENE 13 10575 - 10695 58 40 aa, chain + ## HITS:1 COG:no KEGG:EF_B0007 NR:ns ## KEGG: EF_B0007 # Name: not_defined # Def: pheromone-responsive regulatory protein R # Organism: E.faecalis # Pathway: not_defined # 1 40 1 40 126 76 97.0 4e-13 MIELKATDLQRITCQLTLFNRQRFKLYNGTTERIVYDFSG Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:38:12 2011 Seq name: gi|307679309|gb|GL456418.1| Enterococcus faecalis TX0411 genomic scaffold Scfld51, whole genome shotgun sequence Length of sequence - 343541 bp Number of predicted genes - 337, with homology - 332 Number of transcription units - 149, operones - 89 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 3 - 95 69 ## EF2783 UDP-glucose 4-epimerase 2 1 Op 2 . + CDS 112 - 1326 1309 ## COG4468 Galactose-1-phosphate uridyltransferase 3 1 Op 3 30/0.000 + CDS 1398 - 3158 1966 ## COG2812 DNA polymerase III, gamma/tau subunits 4 1 Op 4 . + CDS 3179 - 3493 536 ## COG0718 Uncharacterized protein conserved in bacteria + Term 3516 - 3577 17.4 + Prom 3575 - 3634 2.8 5 2 Op 1 1/0.222 + CDS 3828 - 4358 576 ## COG4732 Predicted membrane protein 6 2 Op 2 6/0.000 + CDS 4342 - 5160 780 ## COG2145 Hydroxyethylthiazole kinase, sugar kinase family 7 2 Op 3 11/0.000 + CDS 5157 - 5792 555 ## COG0352 Thiamine monophosphate synthase 8 2 Op 4 . + CDS 5789 - 6619 1050 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase + Term 6625 - 6672 14.2 - Term 6613 - 6660 14.2 9 3 Tu 1 . - CDS 6712 - 7068 420 ## COG1733 Predicted transcriptional regulators - Prom 7116 - 7175 7.3 + Prom 7064 - 7123 2.7 10 4 Tu 1 . + CDS 7213 - 8403 1197 ## COG2814 Arabinose efflux permease + Term 8409 - 8469 12.3 - Term 8405 - 8447 2.3 11 5 Tu 1 . - CDS 8454 - 9815 1328 ## COG0477 Permeases of the major facilitator superfamily - Prom 9864 - 9923 5.7 - Term 9839 - 9891 10.0 12 6 Tu 1 . - CDS 9979 - 10764 745 ## EF2771 hypothetical protein - Prom 10905 - 10964 7.8 + Prom 10874 - 10933 6.5 13 7 Op 1 4/0.044 + CDS 11138 - 11701 693 ## COG4721 Predicted membrane protein 14 7 Op 2 . + CDS 11698 - 13056 984 ## COG1122 ABC-type cobalt transport system, ATPase component 15 7 Op 3 . + CDS 13047 - 13700 374 ## EF2768 hypothetical protein 16 7 Op 4 . + CDS 13712 - 14374 837 ## COG0819 Putative transcription activator + Term 14383 - 14426 5.2 + Prom 14419 - 14478 4.4 17 8 Tu 1 . + CDS 14550 - 15146 641 ## COG0353 Recombinational DNA repair protein (RecF pathway) + Prom 15218 - 15277 4.9 18 9 Op 1 4/0.044 + CDS 15353 - 15991 815 ## COG0125 Thymidylate kinase 19 9 Op 2 2/0.178 + CDS 16011 - 16340 506 ## COG3870 Uncharacterized protein conserved in bacteria 20 9 Op 3 7/0.000 + CDS 16342 - 17292 840 ## COG0470 ATPase involved in DNA replication 21 9 Op 4 5/0.000 + CDS 17409 - 18248 968 ## COG1774 Uncharacterized homolog of PSP1 22 9 Op 5 2/0.178 + CDS 18241 - 18588 433 ## COG4467 Uncharacterized protein conserved in bacteria + Term 18615 - 18675 17.5 + Prom 18599 - 18658 5.2 23 10 Op 1 . + CDS 18701 - 19573 833 ## COG0313 Predicted methyltransferases 24 10 Op 2 4/0.044 + CDS 19588 - 20250 213 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 25 10 Op 3 . + CDS 20234 - 20992 687 ## COG0390 ABC-type uncharacterized transport system, permease component + Term 21000 - 21049 7.3 + Prom 21001 - 21060 2.5 26 11 Tu 1 . + CDS 21118 - 22236 1257 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair - Term 22218 - 22276 14.2 27 12 Op 1 12/0.000 - CDS 22281 - 22877 566 ## COG0602 Organic radical activating enzymes 28 12 Op 2 . - CDS 22910 - 25093 1993 ## COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase - Prom 25190 - 25249 10.0 + Prom 25296 - 25355 6.9 29 13 Op 1 36/0.000 + CDS 25499 - 26266 290 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 30 13 Op 2 . + CDS 26256 - 28352 1512 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Term 28357 - 28400 9.4 + Prom 28463 - 28522 11.1 31 14 Op 1 . + CDS 28556 - 28705 148 ## EF2750 hypothetical protein 32 14 Op 2 6/0.000 + CDS 28720 - 30240 1946 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins 33 14 Op 3 7/0.000 + CDS 30237 - 31442 1036 ## COG1696 Predicted membrane protein involved in D-alanine export 34 14 Op 4 6/0.000 + CDS 31475 - 31711 483 ## COG0236 Acyl carrier protein + Prom 31750 - 31809 3.1 35 14 Op 5 . + CDS 31846 - 32985 1196 ## COG3966 Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) + Term 33046 - 33105 2.0 + Prom 33112 - 33171 10.0 36 15 Op 1 . + CDS 33198 - 34280 1353 ## COG1363 Cellulase M and related proteins 37 15 Op 2 . + CDS 34301 - 35092 776 ## EF2743 hypothetical protein + Term 35097 - 35151 8.3 + Prom 35153 - 35212 3.0 38 16 Op 1 2/0.178 + CDS 35238 - 35978 936 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III 39 16 Op 2 . + CDS 36011 - 37015 1080 ## COG0095 Lipoate-protein ligase A + Term 37025 - 37059 5.3 + Prom 37397 - 37456 7.2 40 17 Tu 1 . + CDS 37631 - 38320 841 ## COG4122 Predicted O-methyltransferase + Term 38339 - 38395 17.5 + Prom 38477 - 38536 10.7 41 18 Op 1 2/0.178 + CDS 38561 - 39124 695 ## COG0450 Peroxiredoxin + Term 39150 - 39198 8.5 42 18 Op 2 . + CDS 39221 - 40903 1954 ## COG0492 Thioredoxin reductase + Term 40953 - 40997 12.5 43 19 Op 1 . - CDS 41319 - 42278 206 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase 44 19 Op 2 . - CDS 42341 - 42658 139 ## gi|307290259|ref|ZP_07570175.1| hypothetical protein HMPREF9509_00563 - Prom 42678 - 42737 3.2 - Term 42700 - 42759 12.6 45 20 Op 1 . - CDS 42779 - 43312 547 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases 46 20 Op 2 . - CDS 43346 - 44101 751 ## COG0708 Exonuclease III - Prom 44182 - 44241 7.8 47 21 Op 1 . + CDS 44308 - 45222 945 ## COG0673 Predicted dehydrogenases and related proteins 48 21 Op 2 . + CDS 45294 - 46196 1300 ## COG0812 UDP-N-acetylmuramate dehydrogenase + Term 46204 - 46252 17.2 - Term 46192 - 46240 13.4 49 22 Op 1 . - CDS 46270 - 46908 653 ## COG0517 FOG: CBS domain - Prom 46961 - 47020 7.3 50 22 Op 2 . - CDS 47121 - 47243 61 ## - Prom 47302 - 47361 3.9 + Prom 46988 - 47047 6.1 51 23 Op 1 . + CDS 47194 - 47346 267 ## PROTEIN SUPPORTED gi|29377208|ref|NP_816362.1| ribosomal protein L33 52 23 Op 2 . + CDS 47367 - 47537 295 ## EF2730 preprotein translocase, SecE subunit + Term 47583 - 47623 1.1 + Prom 47582 - 47641 7.4 53 24 Op 1 . + CDS 47662 - 48207 759 ## COG0250 Transcription antiterminator + Term 48254 - 48305 8.2 54 24 Op 2 . + CDS 48327 - 49205 943 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold + Term 49212 - 49256 12.4 - Term 49189 - 49252 21.1 55 25 Tu 1 . - CDS 49298 - 50020 392 ## EF2727 phosphosugar-binding transcriptional regulator, putative - Prom 50067 - 50126 13.9 + Prom 49800 - 49859 5.6 56 26 Op 1 . + CDS 50098 - 51726 1636 ## COG4166 ABC-type oligopeptide transport system, periplasmic component 57 26 Op 2 . + CDS 51740 - 52843 1085 ## COG1363 Cellulase M and related proteins 58 26 Op 3 . + CDS 52840 - 53685 944 ## COG2362 D-aminopeptidase + Term 53693 - 53743 10.4 - Term 53676 - 53734 4.2 59 27 Op 1 9/0.000 - CDS 53750 - 54622 1204 ## COG1760 L-serine deaminase 60 27 Op 2 . - CDS 54645 - 55346 707 ## COG1760 L-serine deaminase - Prom 55548 - 55607 5.1 + Prom 55420 - 55479 5.2 61 28 Tu 1 . + CDS 55689 - 57185 1536 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 62 29 Op 1 55/0.000 + CDS 57308 - 57730 679 ## PROTEIN SUPPORTED gi|29377197|ref|NP_816351.1| ribosomal protein L11 + Prom 57759 - 57818 2.7 63 29 Op 2 43/0.000 + CDS 57842 - 58531 1156 ## PROTEIN SUPPORTED gi|29377196|ref|NP_816350.1| 50S ribosomal protein L1 + Term 58562 - 58607 10.0 64 30 Op 1 47/0.000 + CDS 58854 - 59354 780 ## PROTEIN SUPPORTED gi|227519497|ref|ZP_03949546.1| 50S ribosomal protein L10 65 30 Op 2 . + CDS 59417 - 59785 571 ## PROTEIN SUPPORTED gi|29377194|ref|NP_816348.1| ribosomal protein L7/L12 + Term 59808 - 59846 7.0 - Term 59918 - 59954 3.2 66 31 Tu 1 . - CDS 60036 - 60899 509 ## EF2713 cell wall surface anchor family protein - Prom 60992 - 61051 8.9 67 32 Tu 1 . - CDS 61228 - 62058 605 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 62128 - 62187 5.9 + Prom 62112 - 62171 8.7 68 33 Op 1 . + CDS 62207 - 63706 1524 ## COG0531 Amino acid transporters 69 33 Op 2 . + CDS 63684 - 66761 3115 ## COG3250 Beta-galactosidase/beta-glucuronidase + Term 66769 - 66815 3.1 + Prom 66807 - 66866 6.2 70 34 Tu 1 . + CDS 66942 - 67190 425 ## COG2261 Predicted membrane protein + Term 67220 - 67268 13.4 - Term 67208 - 67256 17.2 71 35 Tu 1 . - CDS 67262 - 68632 1499 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase - Prom 68669 - 68728 10.1 + Prom 68519 - 68578 7.8 72 36 Op 1 . + CDS 68764 - 69564 841 ## COG2137 Uncharacterized protein conserved in bacteria 73 36 Op 2 . + CDS 69554 - 70738 1183 ## COG1194 A/G-specific DNA glycosylase + Term 70739 - 70792 13.3 + Prom 70793 - 70852 4.8 74 37 Op 1 . + CDS 70919 - 72043 1125 ## COG1316 Transcriptional regulator + Prom 72130 - 72189 10.0 75 37 Op 2 . + CDS 72235 - 72666 550 ## EF2702 hypothetical protein + Term 72669 - 72719 12.2 + Prom 72717 - 72776 8.2 76 38 Tu 1 . + CDS 72831 - 74351 493 ## COG0312 Predicted Zn-dependent proteases and their inactivated homologs + Term 74361 - 74407 -0.8 - Term 74833 - 74883 8.5 77 39 Op 1 . - CDS 74964 - 75488 665 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 78 39 Op 2 . - CDS 75505 - 76326 911 ## COG1051 ADP-ribose pyrophosphatase - Prom 76359 - 76418 7.7 - Term 76403 - 76459 17.3 79 40 Op 1 4/0.044 - CDS 76489 - 77676 1581 ## COG3853 Uncharacterized protein involved in tellurite resistance 80 40 Op 2 . - CDS 77696 - 78376 818 ## COG4915 5-bromo-4-chloroindolyl phosphate hydrolysis protein - Prom 78429 - 78488 6.0 + Prom 78620 - 78679 8.0 81 41 Op 1 . + CDS 78761 - 79345 589 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 82 41 Op 2 . + CDS 79342 - 79638 398 ## EF2695 hypothetical protein 83 41 Op 3 . + CDS 79654 - 80349 994 ## COG0775 Nucleoside phosphorylase + Term 80353 - 80417 24.5 - Term 80346 - 80398 18.0 84 42 Op 1 6/0.000 - CDS 80416 - 80682 319 ## COG2827 Predicted endonuclease containing a URI domain 85 42 Op 2 . - CDS 80672 - 81406 824 ## COG4123 Predicted O-methyltransferase 86 42 Op 3 . - CDS 81381 - 81443 65 ## - Prom 81620 - 81679 6.1 + Prom 81401 - 81460 5.9 87 43 Tu 1 . + CDS 81595 - 82221 805 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase + Term 82252 - 82299 4.0 + Prom 82321 - 82380 7.8 88 44 Op 1 28/0.000 + CDS 82405 - 83541 1014 ## COG0420 DNA repair exonuclease 89 44 Op 2 1/0.222 + CDS 83546 - 86683 3669 ## COG0419 ATPase involved in DNA repair 90 44 Op 3 . + CDS 86703 - 89900 3249 ## COG0553 Superfamily II DNA/RNA helicases, SNF2 family 91 44 Op 4 . + CDS 89950 - 90321 535 ## EF2687 hypothetical protein 92 44 Op 5 . + CDS 90322 - 90873 562 ## EF2687 hypothetical protein + Prom 90897 - 90956 13.7 93 45 Op 1 . + CDS 91073 - 93244 2119 ## COG4886 Leucine-rich repeat (LRR) protein 94 45 Op 2 . + CDS 93281 - 93616 183 ## EF2685 cell wall surface anchor family protein 95 45 Op 3 . + CDS 93618 - 94400 953 ## EF2684 hypothetical protein 96 45 Op 4 . + CDS 94440 - 95216 966 ## EF2683 hypothetical protein + Term 95230 - 95274 3.0 97 45 Op 5 . + CDS 95291 - 96316 1030 ## EF2682 hypothetical protein + Term 96323 - 96359 7.3 - Term 96311 - 96347 3.5 98 46 Tu 1 . - CDS 96354 - 97067 670 ## COG1011 Predicted hydrolase (HAD superfamily) - Prom 97199 - 97258 6.5 + Prom 97067 - 97126 7.3 99 47 Op 1 . + CDS 97243 - 97329 83 ## 100 47 Op 2 . + CDS 97395 - 99113 241 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Term 99119 - 99154 4.1 - Term 99097 - 99151 14.6 101 48 Tu 1 . - CDS 99157 - 100167 1016 ## COG0180 Tryptophanyl-tRNA synthetase - Prom 100356 - 100415 11.3 + Prom 100340 - 100399 10.6 102 49 Tu 1 . + CDS 100527 - 100925 435 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family + Term 100939 - 100984 3.4 + Prom 101170 - 101229 5.2 103 50 Tu 1 3/0.111 + CDS 101268 - 101930 844 ## COG4862 Negative regulator of genetic competence, sporulation and motility + Term 101931 - 101978 5.2 + Prom 101935 - 101994 3.8 104 51 Op 1 7/0.000 + CDS 102019 - 103197 382 ## COG4469 Competence protein 105 51 Op 2 . + CDS 103245 - 105056 2154 ## COG1164 Oligoendopeptidase F + Term 105067 - 105111 12.4 - Term 105049 - 105107 14.5 106 52 Op 1 1/0.222 - CDS 105150 - 105809 654 ## COG2761 Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis 107 52 Op 2 . - CDS 105873 - 106451 603 ## COG4116 Uncharacterized protein conserved in bacteria - Prom 106475 - 106534 3.6 + Prom 106377 - 106436 6.5 108 53 Op 1 6/0.000 + CDS 106648 - 107322 807 ## COG2357 Uncharacterized protein conserved in bacteria 109 53 Op 2 7/0.000 + CDS 107335 - 108132 692 ## COG0061 Predicted sugar kinase 110 53 Op 3 1/0.222 + CDS 108140 - 109033 261 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit 111 53 Op 4 . + CDS 109064 - 110425 1818 ## COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain) + Term 110492 - 110538 7.2 - Term 110479 - 110524 10.0 112 54 Tu 1 . - CDS 110543 - 111172 895 ## COG3142 Uncharacterized protein involved in copper resistance + Prom 111213 - 111272 3.7 113 55 Tu 1 . + CDS 111302 - 112147 696 ## COG0500 SAM-dependent methyltransferases + Term 112344 - 112383 0.3 + Prom 112357 - 112416 7.9 114 56 Tu 1 . + CDS 112459 - 112965 591 ## COG0219 Predicted rRNA methylase (SpoU class) + Term 112984 - 113027 2.0 + Prom 112971 - 113030 4.8 115 57 Op 1 1/0.222 + CDS 113182 - 113826 759 ## COG0406 Fructose-2,6-bisphosphatase 116 57 Op 2 . + CDS 113853 - 116462 3044 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member + Term 116473 - 116517 13.2 - Term 116455 - 116511 13.1 117 58 Tu 1 . - CDS 116529 - 117488 801 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase - Prom 117511 - 117570 6.1 + Prom 117624 - 117683 5.2 118 59 Op 1 . + CDS 117751 - 118257 470 ## COG4708 Predicted membrane protein + Term 118313 - 118358 -0.4 + Prom 118393 - 118452 7.2 119 59 Op 2 . + CDS 118495 - 119700 1383 ## COG2348 Uncharacterized protein involved in methicillin resistance + Term 119708 - 119763 16.1 - Term 119695 - 119749 17.1 120 60 Op 1 3/0.111 - CDS 119756 - 120391 649 ## COG4684 Predicted membrane protein 121 60 Op 2 3/0.111 - CDS 120395 - 120949 557 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase 122 60 Op 3 . - CDS 120946 - 121719 923 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase 123 60 Op 4 . - CDS 121735 - 122727 1355 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases - Prom 122816 - 122875 5.5 + Prom 122855 - 122914 7.3 124 61 Op 1 4/0.044 + CDS 122991 - 123533 609 ## COG1396 Predicted transcriptional regulators 125 61 Op 2 30/0.000 + CDS 123559 - 124644 1130 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components 126 61 Op 3 36/0.000 + CDS 124663 - 125469 826 ## COG1176 ABC-type spermidine/putrescine transport system, permease component I 127 61 Op 4 25/0.000 + CDS 125469 - 126305 836 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 128 61 Op 5 . + CDS 126302 - 127375 1250 ## COG0687 Spermidine/putrescine-binding periplasmic protein + Term 127398 - 127458 20.5 + Prom 127444 - 127503 4.6 129 62 Tu 1 . + CDS 127526 - 128209 394 ## EF2648 hypothetical protein + Prom 128233 - 128292 6.2 130 63 Op 1 6/0.000 + CDS 128319 - 129611 1246 ## COG2610 H+/gluconate symporter and related permeases 131 63 Op 2 1/0.222 + CDS 129633 - 130781 1463 ## COG1929 Glycerate kinase + Term 130842 - 130910 12.2 + Prom 130790 - 130849 3.0 132 64 Tu 1 . + CDS 130923 - 131936 893 ## COG3835 Sugar diacid utilization regulator + Prom 131959 - 132018 8.4 133 65 Tu 1 . + CDS 132059 - 132961 1100 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase + Term 132979 - 133033 3.6 + Prom 133015 - 133074 4.8 134 66 Tu 1 . + CDS 133105 - 133815 741 ## COG3597 Uncharacterized protein/domain associated with GTPases + Term 133994 - 134030 4.1 - Term 134024 - 134066 8.1 135 67 Op 1 16/0.000 - CDS 134099 - 135808 2012 ## COG4176 ABC-type proline/glycine betaine transport system, permease component 136 67 Op 2 1/0.222 - CDS 135801 - 136991 1455 ## COG4175 ABC-type proline/glycine betaine transport system, ATPase component - Prom 137130 - 137189 12.4 - Term 137141 - 137182 3.6 137 68 Op 1 . - CDS 137191 - 137823 593 ## COG0490 Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels 138 68 Op 2 . - CDS 137838 - 139784 2095 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains + Prom 139903 - 139962 6.3 139 69 Tu 1 . + CDS 139998 - 140648 858 ## COG2344 AT-rich DNA-binding protein + Term 140655 - 140703 11.1 - Term 140642 - 140690 9.2 140 70 Op 1 . - CDS 140691 - 141344 633 ## COG1266 Predicted metal-dependent membrane protease 141 70 Op 2 . - CDS 141363 - 141539 203 ## EF2636 hypothetical protein - Prom 141561 - 141620 7.3 + Prom 141687 - 141746 6.2 142 71 Op 1 41/0.000 + CDS 141772 - 142056 423 ## COG0234 Co-chaperonin GroES (HSP10) 143 71 Op 2 . + CDS 142114 - 143739 1605 ## PROTEIN SUPPORTED gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 + Term 143762 - 143797 5.3 + Prom 143951 - 144010 12.6 144 72 Op 1 . + CDS 144042 - 144761 711 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 145 72 Op 2 . + CDS 144785 - 145420 800 ## EF2629 hypothetical protein 146 72 Op 3 . + CDS 145512 - 146318 681 ## COG1705 Muramidase (flagellum-specific) + Prom 146321 - 146380 6.8 147 73 Op 1 . + CDS 146460 - 146870 256 ## COG2246 Predicted membrane protein 148 73 Op 2 5/0.000 + CDS 146948 - 148432 1589 ## COG1488 Nicotinic acid phosphoribosyltransferase 149 73 Op 3 . + CDS 148435 - 149262 1131 ## COG0171 NAD synthase + Term 149266 - 149310 9.0 + Prom 149373 - 149432 4.7 150 74 Op 1 . + CDS 149455 - 151260 1955 ## COG2217 Cation transport ATPase + Prom 151271 - 151330 2.9 151 74 Op 2 5/0.000 + CDS 151352 - 151636 385 ## COG3592 Uncharacterized conserved protein 152 74 Op 3 . + CDS 151626 - 151901 386 ## COG2388 Predicted acetyltransferase + Term 151917 - 151965 12.7 + Prom 151960 - 152019 4.9 153 75 Tu 1 . + CDS 152069 - 152305 369 ## COG1314 Preprotein translocase subunit SecG + Term 152335 - 152384 12.4 + Prom 152370 - 152429 5.5 154 76 Op 1 4/0.044 + CDS 152460 - 153224 797 ## COG1647 Esterase/lipase 155 76 Op 2 10/0.000 + CDS 153224 - 155593 1620 ## PROTEIN SUPPORTED gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 156 76 Op 3 . + CDS 155606 - 156070 637 ## COG0691 tmRNA-binding protein + Term 156208 - 156248 -0.3 + Prom 156078 - 156137 7.2 157 77 Op 1 40/0.000 + CDS 156373 - 157092 653 ## COG0356 F0F1-type ATP synthase, subunit a 158 77 Op 2 37/0.000 + CDS 157141 - 157362 428 ## COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K + Term 157373 - 157426 4.0 159 77 Op 3 38/0.000 + CDS 157500 - 158030 740 ## COG0711 F0F1-type ATP synthase, subunit b 160 77 Op 4 41/0.000 + CDS 158017 - 158559 706 ## COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) 161 77 Op 5 42/0.000 + CDS 158588 - 160144 2250 ## COG0056 F0F1-type ATP synthase, alpha subunit 162 77 Op 6 42/0.000 + CDS 160160 - 161068 1074 ## COG0224 F0F1-type ATP synthase, gamma subunit + Term 161077 - 161125 8.3 163 77 Op 7 42/0.000 + CDS 161142 - 162548 1925 ## COG0055 F0F1-type ATP synthase, beta subunit 164 77 Op 8 . + CDS 162565 - 162984 629 ## COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) + Term 162989 - 163017 -0.0 + Prom 163077 - 163136 6.1 165 78 Tu 1 . + CDS 163173 - 163409 123 ## EF2606 hypothetical protein 166 79 Tu 1 . - CDS 163359 - 163493 65 ## gi|307285548|ref|ZP_07565687.1| hypothetical protein HMPREF9515_02931 - Prom 163646 - 163705 5.2 + Prom 163411 - 163470 6.2 167 80 Op 1 . + CDS 163512 - 164813 1757 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase 168 80 Op 2 . + CDS 164827 - 165003 267 ## EF2604 hypothetical protein + Term 165017 - 165067 7.1 + Prom 165043 - 165102 9.7 169 81 Op 1 . + CDS 165131 - 165499 451 ## COG3731 Phosphotransferase system sorbitol-specific component IIA 170 81 Op 2 . + CDS 165504 - 166673 1417 ## COG0628 Predicted permease + Term 166679 - 166721 9.1 - Term 166666 - 166708 9.1 171 82 Tu 1 . - CDS 166735 - 167361 900 ## COG1182 Acyl carrier protein phosphodiesterase - Prom 167482 - 167541 8.7 + Prom 167439 - 167498 16.4 172 83 Op 1 7/0.000 + CDS 167663 - 168505 853 ## COG3711 Transcriptional antiterminator + Prom 168569 - 168628 1.9 173 83 Op 2 8/0.000 + CDS 168668 - 170548 2208 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 174 83 Op 3 . + CDS 170573 - 172018 1737 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase + Term 172092 - 172141 10.1 + Prom 172121 - 172180 5.4 175 84 Tu 1 . + CDS 172200 - 172769 711 ## COG0194 Guanylate kinase + Term 172774 - 172832 9.1 + Prom 172817 - 172876 9.3 176 85 Op 1 . + CDS 172917 - 173594 749 ## COG1309 Transcriptional regulator 177 85 Op 2 35/0.000 + CDS 173615 - 175342 184 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 178 85 Op 3 . + CDS 175339 - 177207 215 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 + Term 177236 - 177298 18.4 + Prom 177266 - 177325 6.6 179 86 Tu 1 . + CDS 177411 - 178238 1007 ## COG2514 Predicted ring-cleavage extradiol dioxygenase + Term 178288 - 178333 1.2 + Prom 178277 - 178336 4.0 180 87 Op 1 . + CDS 178368 - 179411 935 ## COG1680 Beta-lactamase class C and other penicillin binding proteins 181 87 Op 2 . + CDS 179453 - 180424 1228 ## COG1482 Phosphomannose isomerase + Term 180430 - 180472 9.2 - Term 180418 - 180459 5.2 182 88 Op 1 . - CDS 180480 - 181025 502 ## EF2588 hypothetical protein 183 88 Op 2 . - CDS 181028 - 182002 851 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase - Prom 182146 - 182205 5.5 - Term 182188 - 182236 8.5 184 89 Op 1 10/0.000 - CDS 182239 - 182928 969 ## COG3442 Predicted glutamine amidotransferase 185 89 Op 2 . - CDS 182921 - 184273 1649 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase - Prom 184326 - 184385 11.5 - Term 184421 - 184467 8.0 186 90 Tu 1 . - CDS 184479 - 185117 650 ## COG2964 Uncharacterized protein conserved in bacteria - Prom 185341 - 185400 5.5 + Prom 185298 - 185357 10.7 187 91 Op 1 1/0.222 + CDS 185520 - 186854 1660 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 188 91 Op 2 1/0.222 + CDS 186885 - 189890 3020 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases 189 91 Op 3 . + CDS 189920 - 191293 1124 ## COG0044 Dihydroorotase and related cyclic amidohydrolases 190 91 Op 4 4/0.044 + CDS 191317 - 192510 1261 ## COG1171 Threonine dehydratase 191 91 Op 5 . + CDS 192516 - 193826 1569 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 192 91 Op 6 8/0.000 + CDS 193865 - 195058 1479 ## COG0078 Ornithine carbamoyltransferase + Prom 195220 - 195279 2.5 193 91 Op 7 . + CDS 195299 - 196243 1122 ## COG0549 Carbamate kinase 194 91 Op 8 . + CDS 196258 - 196638 456 ## COG0251 Putative translation initiation inhibitor, yjgF family + Term 196665 - 196711 -0.5 + Prom 196644 - 196703 6.5 195 92 Op 1 . + CDS 196732 - 198051 404 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 198066 - 198105 5.3 196 92 Op 2 . + CDS 198145 - 198504 382 ## COG2005 N-terminal domain of molybdenum-binding protein 197 92 Op 3 6/0.000 + CDS 198501 - 199508 837 ## COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family + Term 199539 - 199580 -0.9 + Prom 199530 - 199589 6.0 198 92 Op 4 1/0.222 + CDS 199629 - 201314 1563 ## COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs 199 92 Op 5 1/0.222 + CDS 201324 - 202202 998 ## COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs 200 92 Op 6 . + CDS 202216 - 202797 743 ## COG2068 Uncharacterized MobA-related protein 201 92 Op 7 . + CDS 202811 - 203959 1052 ## COG0520 Selenocysteine lyase 202 92 Op 8 . + CDS 203975 - 204997 939 ## COG0709 Selenophosphate synthase 203 92 Op 9 . + CDS 205013 - 205600 742 ## EF2566 hypothetical protein 204 92 Op 10 . + CDS 205620 - 205877 181 ## EF2565 hypothetical protein 205 92 Op 11 . + CDS 205865 - 206620 463 ## EF2564 hypothetical protein 206 92 Op 12 . + CDS 206584 - 207414 882 ## COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family + Term 207598 - 207635 0.9 + Prom 207524 - 207583 10.4 207 93 Op 1 . + CDS 207656 - 208114 594 ## COG0716 Flavodoxins 208 93 Op 2 5/0.000 + CDS 208170 - 209009 1022 ## COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases 209 93 Op 3 . + CDS 209002 - 210420 1465 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases 210 93 Op 4 . + CDS 210441 - 213974 3799 ## COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit + Term 213980 - 214017 6.4 - Term 213966 - 214005 6.0 211 94 Tu 1 . - CDS 214011 - 215426 1180 ## COG0168 Trk-type K+ transport systems, membrane components + Prom 215678 - 215737 7.3 212 95 Tu 1 . + CDS 215796 - 217313 2198 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Term 217327 - 217374 10.3 + Prom 217364 - 217423 5.5 213 96 Op 1 3/0.111 + CDS 217540 - 218124 536 ## COG1435 Thymidine kinase 214 96 Op 2 32/0.000 + CDS 218136 - 219209 1426 ## COG0216 Protein chain release factor A 215 96 Op 3 10/0.000 + CDS 219202 - 220035 239 ## PROTEIN SUPPORTED gi|169796031|ref|YP_001713824.1| putative adenine-specific methylase 216 96 Op 4 1/0.222 + CDS 220079 - 221101 1271 ## COG0009 Putative translation factor (SUA5) 217 96 Op 5 5/0.000 + CDS 221177 - 222415 1529 ## COG0112 Glycine/serine hydroxymethyltransferase + Term 222461 - 222512 6.3 + Prom 222462 - 222521 6.8 218 96 Op 6 . + CDS 222547 - 223176 835 ## COG0035 Uracil phosphoribosyltransferase + Term 223187 - 223230 7.1 + Prom 223202 - 223261 10.8 219 97 Tu 1 . + CDS 223282 - 223554 316 ## EF2548 hypothetical protein + Term 223703 - 223740 1.2 220 98 Tu 1 . - CDS 223628 - 223864 213 ## EF2547 hypothetical protein - Prom 224040 - 224099 74.3 + TRNA 224023 - 224095 75.8 # Thr CGT 0 0 - Term 224094 - 224139 15.3 221 99 Op 1 9/0.000 - CDS 224145 - 224471 339 ## COG4392 Predicted membrane protein 222 99 Op 2 . - CDS 224458 - 225165 806 ## COG1296 Predicted branched-chain amino acid permease (azaleucine resistance) 223 99 Op 3 . - CDS 225162 - 225263 134 ## - Prom 225369 - 225428 9.8 + Prom 225255 - 225314 8.7 224 100 Op 1 . + CDS 225379 - 225930 567 ## COG1396 Predicted transcriptional regulators + Prom 225951 - 226010 4.5 225 100 Op 2 . + CDS 226043 - 227374 927 ## EF2507 hypothetical protein + Term 227397 - 227449 7.1 + Prom 227430 - 227489 9.1 226 101 Op 1 . + CDS 227574 - 228776 1215 ## EF2505 cell wall surface anchor family protein 227 101 Op 2 . + CDS 228796 - 231234 2251 ## COG4932 Predicted outer membrane protein 228 101 Op 3 . + CDS 231308 - 232222 750 ## EF2505 cell wall surface anchor family protein + Prom 232328 - 232387 3.5 229 102 Op 1 . + CDS 232421 - 233122 517 ## EF2504 hypothetical protein 230 102 Op 2 . + CDS 233123 - 234559 1150 ## EF2503 hypothetical protein + Term 234563 - 234603 6.1 + Prom 234716 - 234775 7.1 231 103 Op 1 1/0.222 + CDS 234803 - 235990 1260 ## COG0772 Bacterial cell division membrane protein 232 103 Op 2 4/0.044 + CDS 236015 - 236374 441 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family 233 103 Op 3 . + CDS 236371 - 236694 519 ## COG0509 Glycine cleavage system H protein (lipoate-binding) + Prom 236778 - 236837 3.6 234 103 Op 4 . + CDS 236868 - 236948 108 ## + Term 236976 - 237036 14.6 + Prom 237023 - 237082 8.0 235 104 Op 1 32/0.000 + CDS 237109 - 238146 1330 ## COG1135 ABC-type metal ion transport system, ATPase component 236 104 Op 2 22/0.000 + CDS 238139 - 238825 797 ## COG2011 ABC-type metal ion transport system, permease component 237 104 Op 3 . + CDS 238840 - 239658 1120 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen + Prom 239918 - 239977 9.0 238 105 Op 1 32/0.000 + CDS 240006 - 240821 743 ## COG0020 Undecaprenyl pyrophosphate synthase 239 105 Op 2 . + CDS 240818 - 241618 943 ## COG0575 CDP-diglyceride synthetase + Term 241656 - 241706 17.1 + Prom 241863 - 241922 9.1 240 106 Op 1 5/0.000 + CDS 242091 - 243260 795 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC 241 106 Op 2 11/0.000 + CDS 243279 - 244745 987 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 242 106 Op 3 . + CDS 244815 - 247325 2466 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 243 106 Op 4 . + CDS 247349 - 248200 702 ## EF2490 hypothetical protein 244 106 Op 5 . + CDS 248227 - 250680 2428 ## COG0812 UDP-N-acetylmuramate dehydrogenase 245 106 Op 6 . + CDS 250698 - 251096 411 ## EF2488 putative lipoprotein 246 106 Op 7 . + CDS 251155 - 252294 1395 ## COG0562 UDP-galactopyranose mutase 247 106 Op 8 26/0.000 + CDS 252320 - 253663 1108 ## COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component 248 106 Op 9 . + CDS 253663 - 254475 678 ## COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component + Term 254487 - 254538 13.1 + Prom 255018 - 255077 10.7 249 107 Op 1 . + CDS 255138 - 255788 800 ## COG2102 Predicted ATPases of PP-loop superfamily + Prom 255790 - 255849 4.5 250 107 Op 2 . + CDS 255876 - 256103 429 ## EF2483 hypothetical protein + Term 256104 - 256157 16.1 + Prom 256130 - 256189 9.2 251 108 Tu 1 . + CDS 256251 - 256982 606 ## COG0546 Predicted phosphatases - Term 257271 - 257307 4.1 252 109 Tu 1 . - CDS 257418 - 258014 490 ## EF2480 hypothetical protein - Term 258259 - 258317 10.1 253 110 Op 1 . - CDS 258383 - 259183 840 ## COG1512 Beta-propeller domains of methanol dehydrogenase type 254 110 Op 2 . - CDS 259180 - 260325 845 ## EF2478 hypothetical protein - Term 260366 - 260408 5.3 255 111 Tu 1 . - CDS 260429 - 261661 1275 ## COG4260 Putative virion core protein (lumpy skin disease virus) - Prom 261780 - 261839 9.9 + Prom 261782 - 261841 4.5 256 112 Tu 1 . + CDS 261869 - 263911 2384 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 + Term 263927 - 263973 8.7 + Prom 263940 - 263999 8.0 257 113 Op 1 20/0.000 + CDS 264027 - 264746 288 ## PROTEIN SUPPORTED gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase 258 113 Op 2 2/0.178 + CDS 264718 - 265272 291 ## PROTEIN SUPPORTED gi|58336726|ref|YP_193311.1| ribosomal protein ala-acetyltransferase 259 113 Op 3 9/0.000 + CDS 265280 - 265744 190 ## PROTEIN SUPPORTED gi|119946836|ref|YP_944516.1| ribosomal-protein-alanine acetyltransferase 260 113 Op 4 . + CDS 265741 - 266787 715 ## PROTEIN SUPPORTED gi|229232313|ref|ZP_04356740.1| (SSU ribosomal protein S18P)-alanine acetyltransferase + Term 267024 - 267076 18.0 + Prom 267026 - 267085 11.3 261 114 Op 1 . + CDS 267106 - 268797 2136 ## COG0018 Arginyl-tRNA synthetase + Prom 268856 - 268915 5.4 262 114 Op 2 . + CDS 268938 - 269453 596 ## COG1418 Predicted HD superfamily hydrolase + Term 269459 - 269492 3.1 - Term 269445 - 269478 3.1 263 115 Tu 1 . - CDS 269534 - 269827 231 ## EF2469 Cro/CI family transcriptional regulator - Prom 270022 - 270081 6.7 + Prom 269935 - 269994 6.8 264 116 Tu 1 . + CDS 270035 - 270283 274 ## EF2467 hypothetical protein + Term 270406 - 270453 8.2 + Prom 270408 - 270467 4.3 265 117 Op 1 . + CDS 270494 - 271759 1237 ## COG0038 Chloride channel protein EriC 266 117 Op 2 2/0.178 + CDS 271809 - 272087 414 ## COG4476 Uncharacterized protein conserved in bacteria 267 117 Op 3 1/0.222 + CDS 272088 - 272870 1030 ## COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family + Term 272876 - 272917 3.4 + Prom 272978 - 273037 6.4 268 118 Tu 1 . + CDS 273091 - 274926 2182 ## COG1217 Predicted membrane GTPase involved in stress response + Term 274951 - 274996 1.4 + Prom 274984 - 275043 9.4 269 119 Tu 1 . + CDS 275243 - 277033 1910 ## COG0514 Superfamily II DNA helicase + Term 277135 - 277190 9.5 + Prom 277154 - 277213 10.0 270 120 Op 1 3/0.111 + CDS 277238 - 277543 430 ## COG4838 Uncharacterized protein conserved in bacteria 271 120 Op 2 4/0.044 + CDS 277547 - 278755 1393 ## COG0772 Bacterial cell division membrane protein 272 120 Op 3 . + CDS 278788 - 282216 4014 ## COG1038 Pyruvate carboxylase 273 120 Op 4 2/0.178 + CDS 282233 - 283357 1008 ## COG2340 Uncharacterized protein with SCP/PR1 domains 274 120 Op 5 3/0.111 + CDS 283354 - 283788 222 ## PROTEIN SUPPORTED gi|163764796|ref|ZP_02171849.1| ribosomal protein S17 275 120 Op 6 2/0.178 + CDS 283778 - 284128 444 ## COG4471 Uncharacterized protein conserved in bacteria + Term 284130 - 284193 16.1 + Prom 284137 - 284196 7.3 276 121 Op 1 14/0.000 + CDS 284227 - 284781 707 ## COG0742 N6-adenine-specific methylase 277 121 Op 2 4/0.044 + CDS 284783 - 285274 334 ## PROTEIN SUPPORTED gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 278 121 Op 3 . + CDS 285279 - 286331 464 ## PROTEIN SUPPORTED gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 + Term 286334 - 286392 19.5 + Prom 286341 - 286400 5.8 279 122 Tu 1 4/0.044 + CDS 286427 - 287071 644 ## COG1555 DNA uptake protein and related DNA-binding proteins + Prom 287074 - 287133 4.7 280 123 Tu 1 . + CDS 287194 - 287697 456 ## COG2131 Deoxycytidylate deaminase + Term 287707 - 287749 2.2 + Prom 287774 - 287833 3.9 281 124 Op 1 4/0.044 + CDS 288020 - 289996 1266 ## COG2333 Predicted hydrolase (metallo-beta-lactamase superfamily) 282 124 Op 2 . + CDS 290054 - 291082 1145 ## COG1466 DNA polymerase III, delta subunit + Term 291083 - 291143 21.7 - Term 291068 - 291133 23.4 283 125 Tu 1 . - CDS 291134 - 292075 1231 ## COG1893 Ketopantoate reductase - Prom 292109 - 292168 6.7 + Prom 292116 - 292175 4.2 284 126 Tu 1 . + CDS 292265 - 292801 385 ## COG1607 Acyl-CoA hydrolase + Term 292807 - 292851 6.2 - Term 292840 - 292882 4.5 285 127 Tu 1 . - CDS 292888 - 293202 509 ## PROTEIN SUPPORTED gi|227519840|ref|ZP_03949889.1| ribosomal protein S20 - Prom 293277 - 293336 5.0 + Prom 293291 - 293350 7.3 286 128 Op 1 21/0.000 + CDS 293371 - 294384 927 ## COG0306 Phosphate/sulphate permeases 287 128 Op 2 . + CDS 294397 - 295020 828 ## COG1392 Phosphate transport regulator (distant homolog of PhoU) 288 128 Op 3 . + CDS 295039 - 295716 552 ## COG3394 Uncharacterized protein conserved in bacteria + Term 295823 - 295872 15.8 - Term 295809 - 295860 16.2 289 129 Tu 1 . - CDS 295864 - 296694 889 ## COG1968 Uncharacterized bacitracin resistance protein - Prom 296732 - 296791 10.8 + Prom 296736 - 296795 8.0 290 130 Tu 1 . + CDS 296876 - 297370 680 ## COG2190 Phosphotransferase system IIA components + Term 297378 - 297419 6.7 + Prom 297379 - 297438 11.7 291 131 Op 1 2/0.178 + CDS 297524 - 298633 1098 ## COG3589 Uncharacterized conserved protein 292 131 Op 2 9/0.000 + CDS 298608 - 299498 1166 ## COG2103 Predicted sugar phosphate isomerase 293 131 Op 3 3/0.111 + CDS 299521 - 300975 1905 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Term 300982 - 301026 5.1 + Prom 300977 - 301036 5.1 294 131 Op 4 . + CDS 301063 - 301911 985 ## COG1737 Transcriptional regulators + Term 301919 - 301967 11.3 - Term 301907 - 301955 15.1 295 132 Op 1 1/0.222 - CDS 301962 - 302672 865 ## COG0406 Fructose-2,6-bisphosphatase 296 132 Op 2 . - CDS 302713 - 303339 762 ## COG0491 Zn-dependent hydrolases, including glyoxylases - Prom 303470 - 303529 7.8 + Prom 303452 - 303511 11.7 297 133 Op 1 4/0.044 + CDS 303559 - 304944 1613 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 298 133 Op 2 1/0.222 + CDS 304948 - 306279 358 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 306359 - 306400 4.0 + Prom 306282 - 306341 9.1 299 134 Tu 1 . + CDS 306421 - 307398 1212 ## COG0516 IMP dehydrogenase/GMP reductase + Term 307423 - 307482 17.7 + Prom 307453 - 307512 5.9 300 135 Op 1 . + CDS 307560 - 307892 209 ## PROTEIN SUPPORTED gi|18309686|ref|NP_561620.1| 30S ribosomal protein 301 135 Op 2 . + CDS 307889 - 308917 1056 ## EF2427 hypothetical protein + Term 308942 - 308994 13.1 + Prom 308970 - 309029 2.5 302 136 Tu 1 . + CDS 309052 - 310503 1346 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs + Prom 310534 - 310593 9.5 303 137 Op 1 . + CDS 310624 - 312348 2309 ## COG1109 Phosphomannomutase + Term 312389 - 312441 10.0 304 137 Op 2 . + CDS 312454 - 313236 1002 ## COG0345 Pyrroline-5-carboxylate reductase + Term 313242 - 313295 9.0 + Prom 313295 - 313354 3.6 305 138 Op 1 . + CDS 313374 - 313661 405 ## COG0640 Predicted transcriptional regulators 306 138 Op 2 11/0.000 + CDS 313713 - 315005 1429 ## COG0460 Homoserine dehydrogenase 307 138 Op 3 19/0.000 + CDS 315008 - 316063 1531 ## COG0498 Threonine synthase 308 138 Op 4 . + CDS 316060 - 316923 912 ## COG0083 Homoserine kinase - Term 316916 - 316969 6.1 309 139 Tu 1 . - CDS 316984 - 317841 858 ## COG1806 Uncharacterized protein conserved in bacteria - Prom 317871 - 317930 6.5 + Prom 317830 - 317889 6.0 310 140 Tu 1 . + CDS 317946 - 318380 423 ## COG0735 Fe2+/Zn2+ uptake regulation proteins + Prom 318397 - 318456 3.6 311 141 Op 1 9/0.000 + CDS 318483 - 318722 400 ## PROTEIN SUPPORTED gi|227519866|ref|ZP_03949915.1| 30S ribosomal protein S21 312 141 Op 2 1/0.222 + CDS 318748 - 319197 420 ## PROTEIN SUPPORTED gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 + Term 319208 - 319249 9.0 + Prom 319212 - 319271 6.4 313 142 Op 1 4/0.044 + CDS 319380 - 320354 1303 ## COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase 314 142 Op 2 7/0.000 + CDS 320383 - 322581 992 ## PROTEIN SUPPORTED gi|163762592|ref|ZP_02169656.1| ribosomal protein S21 315 142 Op 3 11/0.000 + CDS 322581 - 323060 699 ## COG0319 Predicted metal-dependent hydrolase 316 142 Op 4 3/0.111 + CDS 323044 - 323445 431 ## COG0818 Diacylglycerol kinase 317 142 Op 5 16/0.000 + CDS 323459 - 324361 1237 ## COG1159 GTPase + Term 324366 - 324426 3.4 318 142 Op 6 . + CDS 324444 - 325229 698 ## COG1381 Recombinational DNA repair protein (RecF pathway) 319 142 Op 7 . + CDS 325271 - 326356 751 ## SSUBM407_1706 membrane protein + Term 326587 - 326629 9.0 + Prom 326884 - 326943 6.9 320 143 Op 1 19/0.000 + CDS 326997 - 327905 1109 ## COG0752 Glycyl-tRNA synthetase, alpha subunit 321 143 Op 2 . + CDS 327907 - 329991 2722 ## COG0751 Glycyl-tRNA synthetase, beta subunit 322 143 Op 3 . + CDS 330031 - 330222 295 ## gi|227553937|ref|ZP_03983984.1| conserved hypothetical protein + Term 330228 - 330262 4.5 - Term 330216 - 330250 3.5 323 144 Tu 1 . - CDS 330256 - 331188 1147 ## COG0706 Preprotein translocase subunit YidC - Prom 331220 - 331279 6.5 - Term 331231 - 331273 2.2 324 145 Tu 1 . - CDS 331355 - 331630 403 ## COG1254 Acylphosphatases - Prom 331752 - 331811 6.4 325 146 Op 1 . + CDS 331737 - 332513 207 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 326 146 Op 2 . + CDS 332533 - 332970 483 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 333031 - 333068 -1.0 + Prom 332972 - 333031 5.3 327 147 Op 1 38/0.000 + CDS 333154 - 333939 1336 ## PROTEIN SUPPORTED gi|29376895|ref|NP_816049.1| 30S ribosomal protein S2 + Term 333953 - 334014 2.4 + Prom 333961 - 334020 2.3 328 147 Op 2 24/0.000 + CDS 334045 - 334926 582 ## PROTEIN SUPPORTED gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts + Term 335045 - 335087 3.1 + Prom 335013 - 335072 3.5 329 147 Op 3 33/0.000 + CDS 335187 - 335909 968 ## COG0528 Uridylate kinase 330 147 Op 4 . + CDS 335913 - 336470 938 ## COG0233 Ribosome recycling factor + Term 336495 - 336535 3.4 + Prom 336581 - 336640 12.7 331 148 Op 1 41/0.000 + CDS 336840 - 337610 194 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 332 148 Op 2 24/0.000 + CDS 337625 - 338911 1545 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 333 148 Op 3 19/0.000 + CDS 338908 - 340143 1448 ## COG0520 Selenocysteine lyase 334 148 Op 4 6/0.000 + CDS 340130 - 340597 668 ## COG0822 NifU homolog involved in Fe-S cluster formation 335 148 Op 5 . + CDS 340616 - 342010 1532 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component + Term 342022 - 342068 11.2 336 149 Op 1 . - CDS 342105 - 343247 807 ## COG0582 Integrase 337 149 Op 2 . - CDS 343286 - 343540 178 ## gi|69245858|ref|ZP_00603675.1| Helix-turn-helix motif Predicted protein(s) >gi|307679309|gb|GL456418.1| GENE 1 3 - 95 69 30 aa, chain + ## HITS:1 COG:no KEGG:EF2783 NR:ns ## KEGG: EF2783 # Name: galE-2 # Def: UDP-glucose 4-epimerase # Organism: E.faecalis # Pathway: Galactose metabolism [PATH:efa00052]; Amino sugar and nucleotide sugar metabolism [PATH:efa00520]; Metabolic pathways [PATH:efa01100] # 1 30 301 330 330 71 100.0 1e-11 GWQPEVTEVKDIIATAWQWHQAHPHGYQEK >gi|307679309|gb|GL456418.1| GENE 2 112 - 1326 1309 404 aa, chain + ## HITS:1 COG:L0027 KEGG:ns NR:ns ## COG: L0027 COG4468 # Protein_GI_number: 15673964 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose-1-phosphate uridyltransferase # Organism: Lactococcus lactis # 1 340 1 369 493 194 31.0 3e-49 MTTSQMIADFTTLAIQAGGWMELDRLYLQNRLLSMIGEQELGEVDIRPVATPAADLAEQL CQVASANQLVKTEQQKEQFMVQLMDLLTPPPSVVNAFFAQHYAKEPQEATEYFYQLCQKN GTVIEQEEPVVFSTVYGDFLANKVHSEASKATLSAQSYPRCEWCMATEGYQGSQQFPATT NHRVIRMNLDGESWGFSFVKQAQYQQQGVIAFEKHQSAKRSIKTFQQLLKIVEVFPHYFA GIDADFEQNEHVYYQTGLQQFPLAEASISEYVELANYPLINAGMVNWPVATFRLEGPNAS EVAQAANDIFEQWQMLKLPTDEIQIVARRKELLYVMDLIFSRPQAKPSLTLAEVQGLTTW NNQKTQALETVASAYQQRLKEASAFAETSEGKAAFLAMVAPVTH >gi|307679309|gb|GL456418.1| GENE 3 1398 - 3158 1966 586 aa, chain + ## HITS:1 COG:lin2852 KEGG:ns NR:ns ## COG: lin2852 COG2812 # Protein_GI_number: 16801912 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Listeria innocua # 1 585 1 579 579 527 48.0 1e-149 MAYQALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAK AINCKHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEY KVYIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRIST QDIVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQV TGSLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPK LLAEKAGTLTEAFKELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLAKTV QPNKHNTPETANQDGSAEGNPELADLQNQIGQLKKELAELKKHGVAAKEADAPRQQARPQ APKSSFRVPTERVYQVLNEATRTHLMNVKNVWEDLLQTLSVTQRAMLKASEPVAASPKGI VVAFDYEIVCARATDDEEMQLAFNNNLSRLMDYTPEMVCITRESWPKLRQSFINQNQGSL NHSEPENEMARLADEPPVTNEHSQENPVVDEAIAMFGEELVEVLDD >gi|307679309|gb|GL456418.1| GENE 4 3179 - 3493 536 104 aa, chain + ## HITS:1 COG:L122849 KEGG:ns NR:ns ## COG: L122849 COG0718 # Protein_GI_number: 15672102 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 5 102 1 98 99 93 58.0 1e-19 MMRGMGNMQGMMKQVQKMQKEMAKAQEALNEKEFIGEATNQLVTATFTGDRTMKDLIIKE DVVDPEDVDMLQDLVIMAVNDALVKIEKETEATLGKYTKGMPGF >gi|307679309|gb|GL456418.1| GENE 5 3828 - 4358 576 176 aa, chain + ## HITS:1 COG:SP0723 KEGG:ns NR:ns ## COG: SP0723 COG4732 # Protein_GI_number: 15900620 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 5 175 7 172 174 185 58.0 4e-47 MEKNRIHRVTLLALMIAMDVVLSPLMRIEGMAPMSSVMNIIAGVLLGPLYGTLMALVCGL IRMTFLGIPPLALTGAVFGAFFAGLFYQWGQKLGWSMLGEIFGTGIIGSLLSYPVMVWFT GSKQNFYWFIYTPRFIGATLIGSVIAWLVLVKLKETRVFKQTQELFLGGYFYENKR >gi|307679309|gb|GL456418.1| GENE 6 4342 - 5160 780 272 aa, chain + ## HITS:1 COG:SP0724 KEGG:ns NR:ns ## COG: SP0724 COG2145 # Protein_GI_number: 15900621 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxyethylthiazole kinase, sugar kinase family # Organism: Streptococcus pneumoniae TIGR4 # 6 271 3 265 267 238 46.0 9e-63 MKTSVKFETIFPLTTAPLIQCITNEITCESMANALLYIDAKPIMADDPREFPQLFQQTSA LVLNLGHLSQEREQSLLAASDYARQVNKLTVVDLVGYGASDIRNEVGEKLVHNQPTVVKG NLSEMRTFCQLVSHGRGVDGSPLDQSEEAIEELIQALRQQTQKFPQTVFLATGIQDVLVS QEQVIVLQNGVPELDCFTGTGDLVGALVAALLGEGNAPMTAAVAAVSYFNLCGEKAKTKS QGLADFRQNTLNQLSLLMKEKDWFEAVKGRVL >gi|307679309|gb|GL456418.1| GENE 7 5157 - 5792 555 211 aa, chain + ## HITS:1 COG:SP0725 KEGG:ns NR:ns ## COG: SP0725 COG0352 # Protein_GI_number: 15900622 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate synthase # Organism: Streptococcus pneumoniae TIGR4 # 2 207 3 209 210 241 60.0 1e-63 MREQLKVYLVTGRYDFSDTEFLKRIETACRSGVTLVQLREKEVSTRRFYELAVKVKAVTD AYQIPLIINDRVDICLAVDAAGVHIGDDELPVALVRKLVGSTKIVGVSAKTVARGVEAEN EGADYLGVGAIFPTTTKDSPLTSLQTLSEIAAAVTIPVVAIGGIKEENIEQLMGTGVAGV SLVSEIMLAEQITEKVQGLMRVTERMLEVRK >gi|307679309|gb|GL456418.1| GENE 8 5789 - 6619 1050 276 aa, chain + ## HITS:1 COG:L0200 KEGG:ns NR:ns ## COG: L0200 COG0351 # Protein_GI_number: 15673245 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Lactococcus lactis # 9 269 6 266 267 256 53.0 4e-68 MTEYNLTPQVVTIAGSDSGGGAGMQADLKTFQARQAFGLNIVIALTAQNTYGVQDSLPIP SSFIDAQFQSLAADFKIGAAKTGMLADSERVEAVVRNLQKVDFGPLIVDPVMVAKGGHHL LEAEAVQTIKEQLLPLATVVTPNLPEAEVLLETTIKTEQEMQTAAKKLQQLGTKNIIMKG GHSTNQQAADYVLMEDGSSFWLSAPRIVTKNTHGTGDTFSACIAAELAKGTPLEAAIVIG KQFIQGAISQAISVGHGHGPTNHWAQLTQDIQVIKA >gi|307679309|gb|GL456418.1| GENE 9 6712 - 7068 420 118 aa, chain - ## HITS:1 COG:L133547 KEGG:ns NR:ns ## COG: L133547 COG1733 # Protein_GI_number: 15672316 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 4 112 3 111 115 160 71.0 5e-40 METRTYAIGVEATMDVIGGKWKPIILCNLRHGAMRPSDLKRGITGISQKMLTQQLRELEE DNIIERKVYNQVPPKVEYYLSDYGQSLSAVLDNLCNWGESHVAHLQEQDQEIYLKCED >gi|307679309|gb|GL456418.1| GENE 10 7213 - 8403 1197 396 aa, chain + ## HITS:1 COG:L131423 KEGG:ns NR:ns ## COG: L131423 COG2814 # Protein_GI_number: 15672314 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Lactococcus lactis # 3 392 2 392 393 427 70.0 1e-119 MEKKISPNLTLFALAINAFAIGSTEFISVGLLPMIVKSFHISLSQAGLTVSLYALGVTIG APLLTILTGKWNRRSLMLGIMLLFISGNLIAAFAPTFIILLVGRILSALAHGIFMSVSTV IAADVVPPSRRASAIAIMFTGLTVATVTGVPLGTFIGQQTAWHMSFLFIASIGLVGLIAS YFLVPKNLPIPGKVDLKGITRIFTNKPLVFSFLITAFGYGGTFAAYTYLSPLLENLGFSA NAVVIILVVYGVMVAIGNTVGGHWANKKPLDSLVKMFSLLILSLVFLFITVLMDNSLLGL LASLMLGLFAFMNVPGLQLYVVELAEKYVPKDITLASAFNIAAFNIGITVGSMTGGVVTD HLSVTYTPIFGGFIVLIAVLFVLYIRKQEEQKNNYL >gi|307679309|gb|GL456418.1| GENE 11 8454 - 9815 1328 453 aa, chain - ## HITS:1 COG:L184818 KEGG:ns NR:ns ## COG: L184818 COG0477 # Protein_GI_number: 15673330 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 2 451 3 449 454 325 48.0 1e-88 MEQKNVRLFPAVLATGIMSFAGVLIETAMNVTFPTLTKEFGVSTGTVQWVTTIYLLVISI MVPLSNYLLKTYSLRRLFIVANLFFLIGLAIDVYSPSFSILLLGRLFQGASTGIALPLMF HIILNFTPLEKRGTMMGVGTLTTSIAPAIGPTYGGILTSSLSWHAIFLFLIPVLLLSLFM GLSAIPEIPVKKTTTLDLVSLIGIALLFSGLLMFLSKIGTLFGWLSLLAAVIGFVIFYKR ATTAEQPLVRLTILKNPAFVLFLCGFLVCQFLLLGISFVLPNFVQIVLGKNAFVAGLVML PGATVGAILAPLSGRVLDQYGAKKPILFGLSLATIGWLALTILLEMPVLLGFVAGHVTYM IGLGFAYSNMMTTGMSLLEEKDFGDGNTLFNTLQQFSGAIATAIVATIINIAQDHADNFA QGTTMGSLISLIFLLTLLVIVLIACWNYFRKKA >gi|307679309|gb|GL456418.1| GENE 12 9979 - 10764 745 261 aa, chain - ## HITS:1 COG:no KEGG:EF2771 NR:ns ## KEGG: EF2771 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 261 1 261 261 433 99.0 1e-120 MGKTLTGFHLKVIGVISMVFDHLLQFFSFLGVPGWFGWIGRIAAPIFLFESSEGFIHTSN RRKYMFRLLLGFWIMGILNGILNAYFSTGGLIINNIFGTLFLGTVYMQSMDYFKQKQIGK GLLWFIVPLLISALPLVVFSSPDILSNPAILIGFQLFNLIVPSLMMTEGGFLFVLLAVAF YLFHGKKWLQISAIGVVALISAASYNFQELFGVNHQWMMILAAIPIVLYNGEKGRGMRNF FYIFYPAHIAIFAIISFFMQR >gi|307679309|gb|GL456418.1| GENE 13 11138 - 11701 693 187 aa, chain + ## HITS:1 COG:SP0719 KEGG:ns NR:ns ## COG: SP0719 COG4721 # Protein_GI_number: 15900616 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 1 177 2 178 186 149 53.0 2e-36 MKKWSLQQVVLLAFLAFLFGGVFMGAGFLYALLNAALLPLGLSPFANELLFGMWTMVAPI AAMLIPRAGSAVLAEVLAALAEMLYGSYFGPSVLISGVIQGLGSESGFFVTRYKRYDTLT LFYSAIGTTIFSYVYEYFKFGYGNYGLGMNIALISVRFVSICFFGIFLTKVILRMYQSAQ GLAVKAK >gi|307679309|gb|GL456418.1| GENE 14 11698 - 13056 984 452 aa, chain + ## HITS:1 COG:SP0720 KEGG:ns NR:ns ## COG: SP0720 COG1122 # Protein_GI_number: 15900617 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Streptococcus pneumoniae TIGR4 # 4 452 3 447 461 308 40.0 1e-83 MNSIQLKAVSFSREQPLFEKTNLAIPQGTFSLLIGDSGSGKSTLLRLIAGFAPLDYQGEI LIEGMERRQLSTREKAQKIGMLFQNPSQQFTMKTLERELIFALENLGISPEEMNRKIQTA LQLVQTQTLFTRELATLSGGEKQKAALTVLLAMNPDILLLDEPFASIDPTSRKQFIQILA RLHQAGKTILVCDHDFNDYADVVDQVVTLKNGQFEKQPLTFIKTKPQTFQLTTSVVKQPM LQLKNFRLSQGKRVLLEEKEALLFKGITTLTGPNGAGKSTLLKAIVQRQKYQGKMFLAGR RLRASKKLYQHMTLAVQQANRQFVTLTLREELLFGQNMTAEKRRKQEEALTFLGLKEKLE HSVFQLSEGQKKMVQLISLLSLDLDCLLLDEPFAGLDERACNYFVEWIKEKSAQQDFLIV THRLEPLSGVSNYRIELLQQQLIIWQEGTTCK >gi|307679309|gb|GL456418.1| GENE 15 13047 - 13700 374 217 aa, chain + ## HITS:1 COG:no KEGG:EF2768 NR:ns ## KEGG: EF2768 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: ABC transporters [PATH:efa02010] # 1 217 1 217 217 350 99.0 2e-95 MQIKQTNAAIYASLILILTFELSFSQSILANLAVFMGCIIFLIGQRKSRLLLWLFFLPLL PAIGTFWSIYLHGTSSQQAWLLFSRTYAFAGLGLAFAVGVDFEELLLLLEQKGLAPNFVY GILVVVHALPEVKREINDLKEASLLRGKTFHFWSPMLYVKTLLVAVSWRDKYTEAMSAHG YEEGATRSRKEHFVSAKVSLGLAILIIIFTNLFIFLT >gi|307679309|gb|GL456418.1| GENE 16 13712 - 14374 837 220 aa, chain + ## HITS:1 COG:L0228 KEGG:ns NR:ns ## COG: L0228 COG0819 # Protein_GI_number: 15673761 # Func_class: K Transcription # Function: Putative transcription activator # Organism: Lactococcus lactis # 1 218 1 218 218 219 55.0 4e-57 MTFTEQAKEQAQASWQGSFQHPFITELHEGTLSPMIFRYYLIQDHYYLKHFSQLYRLIAA QTQQPRLKKLLLTNAENLALGELTIRETFFEELAITEEEVAATPIAPTAYHYVSHMYRQL IEGTPKTAAASMLPCSWLYQEIGSQLVKQHSSEPLYQRWIETYAGEEAYQHVQEERQLLD QLYEESSSQEQAAMITAFVISSEMEYAFWEMAYTHETWIG >gi|307679309|gb|GL456418.1| GENE 17 14550 - 15146 641 198 aa, chain + ## HITS:1 COG:L0265 KEGG:ns NR:ns ## COG: L0265 COG0353 # Protein_GI_number: 15672322 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Lactococcus lactis # 1 198 1 198 198 300 75.0 2e-81 MNYPEPIAKLIESYMKLPGIGQKTATRLAFYTIDMKEEDANAFAKALISVKRDLHFCSIC GNITEEDPCEICQDKNRDRSIILVVEEPKDVMAMEKMREYQGLYHVLHGVLSPMEGTGPE DINIASLIKRLHDDEVKEVIIATNATTEGEATAMYLSRLIKPAGITVTRLAHGLSVGSDI EYADEITLLKAVEGRREI >gi|307679309|gb|GL456418.1| GENE 18 15353 - 15991 815 212 aa, chain + ## HITS:1 COG:BH0042 KEGG:ns NR:ns ## COG: BH0042 COG0125 # Protein_GI_number: 15612605 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate kinase # Organism: Bacillus halodurans # 2 207 3 207 210 218 56.0 7e-57 MQGIFITFEGPDGAGKTSVLKEVSERLAKESKRKIVTTREPGGIPIAEKIRTVILDPRND RMDERTEALLYAAARRQHLVEKILPALEAGHLVLCDRFVDSSLAYQGAGRRIGIAPIASI NAFATEGVSPDFTIYLDVDSDTGLRRIQENRTQQIDRLDSEGLEFHQRVRHEYLKLAEEN PQRIKKIDARMSLELVVEATYQAIIERYPENF >gi|307679309|gb|GL456418.1| GENE 19 16011 - 16340 506 109 aa, chain + ## HITS:1 COG:lin2840 KEGG:ns NR:ns ## COG: lin2840 COG3870 # Protein_GI_number: 16801900 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 109 1 109 109 143 59.0 7e-35 MKIILAIVQDKDSNRLANEFIDANIRATKLSSTGGFLKAGNSTFIIGIDDERVDETLALI KETCQSRKQYVSTPVTLDITMDGQIPYPVEVEVGGATCFVLPVEGFHQY >gi|307679309|gb|GL456418.1| GENE 20 16342 - 17292 840 316 aa, chain + ## HITS:1 COG:BS_holB KEGG:ns NR:ns ## COG: BS_holB COG0470 # Protein_GI_number: 16077099 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication # Organism: Bacillus subtilis # 5 311 6 326 329 222 38.0 9e-58 MNEAQQLQQMQPLLYKQLQKSFEHGRLAHAYLFEGDTGTGKQEFGLWMAKHVFCTNLVNQ QPCNECHNCVRINENEHPDVLRIAPDGQTIKVNQIRELKAEFSKSGVETAKKVFLIQEAD KMSTGAANSLLKFLEEPEGQILAILETTSLSRILPTIQSRCQTLHFQPLVKKTLIDRLIK QGIGEKTATLLAELTNSFEKAVEISQDEWFNEAREIILQWFNYLKSNDLQAFIYVQKKMV KVFKEKEQQALSFDLLMVYYRQLLEESVATQQAKKITEEQAERLALILKARQKWTANVSW QNVCEQLVIQMIHPKS >gi|307679309|gb|GL456418.1| GENE 21 17409 - 18248 968 279 aa, chain + ## HITS:1 COG:BH0045 KEGG:ns NR:ns ## COG: BH0045 COG1774 # Protein_GI_number: 15612608 # Func_class: S Function unknown # Function: Uncharacterized homolog of PSP1 # Organism: Bacillus halodurans # 1 249 1 249 275 321 65.0 8e-88 MVEVVGVRFREAGHIYYFAPGKSEYIYNEKVLVESQQSKQLATVAIPKKTVDSDDLPEDL KPILNKATANDLEKEQKNLADAEAAKSIANEKIRAHDLKMKLVRVEYTFDRSKMIFYFTA DGRIDFRELVKDLAAIFRTRIELRQIGVRDEAKILGGIGPCGRQLCCSTFLGDFMPVSIK MAKDQGLSLNPVKISGLCGRLMCCLKYENDEYEAAKKELPDYGKEVITPDGKGKVVGLNL LSRIVKVRLHGREIAADYDYEEIKEATAKVAAEKGDQNG >gi|307679309|gb|GL456418.1| GENE 22 18241 - 18588 433 115 aa, chain + ## HITS:1 COG:SPy0405 KEGG:ns NR:ns ## COG: SPy0405 COG4467 # Protein_GI_number: 15674542 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 109 1 104 107 75 40.0 3e-14 MDKRSLYDGLNSLETDLDSSVTQLREIKAALHELVEKNTTLEIENQRLREHLQELNKLAG NTTETEKQELSKSRMNLEKLYEEGFHVCNILYGSRRENDEECAFCLDVIYGERTR >gi|307679309|gb|GL456418.1| GENE 23 18701 - 19573 833 290 aa, chain + ## HITS:1 COG:L6615 KEGG:ns NR:ns ## COG: L6615 COG0313 # Protein_GI_number: 15672384 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Lactococcus lactis # 4 290 19 302 302 294 54.0 1e-79 MQKQKSFDKQTTKGKLYLVPTPIGNLEDMSIRCLNILKEATVIASEDTRNTQKLLNHFEI TTPQISLHEHNYKERIPQLITRLLNGETIAQVSDAGMPSISDPGHELVTACLEEELAVIA LPGPTAGMTALIASGLLPQPFTFYGFLPRKKKEQKDVLSALKEERPTQIFYESPYRIAKT VATFAEVYGQERPAVICRELTKLHEEYLRGTLGELTEYLAENTLKGECCLLVSGFTGEKE TIAAMPAISLKEHVQVLMEEEGRSSKEAIKEVAKLRNVKKQEVYKEYHSI >gi|307679309|gb|GL456418.1| GENE 24 19588 - 20250 213 220 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 193 1 199 223 86 32 1e-15 MSNLLRAEGVSYQVNGRSILSDIDLSFETGSNTTIVGPSGSGKSTFLKILSSLLSPTEGE IFYQEAPITTMPIETYRQKVSYCFQQPTLFGETVYDNLLFPFTVRQEAFNQEKVVALLQQ VKLPAAYLEKKIAELSGGERQRVALLRNIIFVPDVLLLDEVTTGLDEESKQIVNQLLNQL NKEQGVTLVRVTHDTEEIQQAQQVIRIVAGKVAPTDGFSS >gi|307679309|gb|GL456418.1| GENE 25 20234 - 20992 687 252 aa, chain + ## HITS:1 COG:STM0503 KEGG:ns NR:ns ## COG: STM0503 COG0390 # Protein_GI_number: 16763883 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Salmonella typhimurium LT2 # 5 252 6 253 259 261 60.0 9e-70 MDLAVNNLSLFFSAMLVVVALIISTKEKLGFTKDIIISVIRAVIQLVAVGYLLKYVFQVN NLILTLIMVLVIVSNAAFNAKKRSQQLQKGFLISFIAIGCSTGITIGILIFSGSIKFIPS QIIPISGMIASNSMVAIGLCYRNLDTLFQNQRQAVMEKLALGATIKLASLPIIQQSVKTG MAPTIDSAKTVGIVSLPGMMSGLIFAGVDPVHAIKYQIMVTFMLLSATSIGSVIATYLAY KGYYNQQKQLVV >gi|307679309|gb|GL456418.1| GENE 26 21118 - 22236 1257 372 aa, chain + ## HITS:1 COG:SPy1846 KEGG:ns NR:ns ## COG: SPy1846 COG0389 # Protein_GI_number: 15675671 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Streptococcus pyogenes M1 GAS # 5 357 2 354 364 430 60.0 1e-120 MMSELRFPLKKDTSRKIIHIDMDAFFASVEERDHPELVGHPLVIARHPSDTGGKGVVTTA NYIARQYGIHSAMSAQKAYELCPSAIFKPGNYQKYSEISQEIREIFRRYTDVIEPVSIDE AYLDVTENKVNSKSAIKIAKMIQYDIWHELQLTCSAGVSYNKFLAKLASDFQKPKGLTVV LPEEAEDFLKALPIEDFHGIGKKTVPKMHELGIFTGADLYKQDEMTLIRLFGKMGYLLYR KVRGIHDAPVQVTRDRKSVGKEHTYGTPLTTEEQVTAQLRQLAAGVERALQRVQKHGKTV VLKVRYTDYTTITKRVTLPEYISKKEELFYQANLIWEDILGLEQGIRLLGITLTNLDPLA YENIVLPLWEKS >gi|307679309|gb|GL456418.1| GENE 27 22281 - 22877 566 198 aa, chain - ## HITS:1 COG:SP0205 KEGG:ns NR:ns ## COG: SP0205 COG0602 # Protein_GI_number: 15900141 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Organic radical activating enzymes # Organism: Streptococcus pneumoniae TIGR4 # 1 196 1 195 196 283 67.0 1e-76 MRNPKPQEWKTEDYSQKKIADYKAFNFVDGEGVRNSLYVSGCLFACEGCFNKAVQNFNYG TPFTESLMNQIIEDLSHDYVQGLTLLGGEPFLNTDVCLSVVKRVRETFGSAKDIWSWSGY TFEELLLETPDKLELLHSIDILVDGRFELAKRNLNLQFRGSSNQRIIDVPKSLAAGKAVI WEKCHDAETSYEQIKKSI >gi|307679309|gb|GL456418.1| GENE 28 22910 - 25093 1993 727 aa, chain - ## HITS:1 COG:SPy2110 KEGG:ns NR:ns ## COG: SPy2110 COG1328 # Protein_GI_number: 15675860 # Func_class: F Nucleotide transport and metabolism # Function: Oxygen-sensitive ribonucleoside-triphosphate reductase # Organism: Streptococcus pyogenes M1 GAS # 17 725 15 722 732 1198 79.0 0 MMKITDEKAEDVNLSTIKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSI VADVNREIAERFTNNVKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERSKATDINV SIGKLINKDQTVVNENANKDSDVFNTQRDLTAGIVGKSIGLKMLPSHVANAHQKGDIHYH DLDYHPYTPMTNCCLIDFKGMLNNGFKIGNADVESPKSIQTATAQISQIIANVASSQYGG CSADRIDELLAPFAERNYEKHLADAQEWIEGEERQKAFARKKTKKDIFDAMQSLEYEINT LFTSNGQTPFTSLGFGLGTNWFEREIQRAILQIRINGLGIEKRTAIFPKLIFTIKRGVNA QPTDPNYDIKQLALECATKRMYPDVLNYDKIVELTGSFKVPMGCRSFLQGWKDEQGEEVN VGRMNLGVVTLNLPRIALEAQGSQEKFWQILNERLAIVKDALVYRVERVKEAKPANAPIL YMYGAFGKRLATQDAVDELFKNKRATVSLGYIGLYEVASAFYGGAWEDNQEAKNFTLDIL KELKKNADNWGNEYGYHFSVYSTPSESLTDRFCRLDTEKFGIVENITDKEYYTNSFHYDV RKNPTPFEKLDFEKDYPKYCSGGFIHYCEYPMLQQNPKALEAVWDYAYDKVGYLGTNTPI DHCYACGFEGDFHPTERGFECPECGNHDPKTCDVVKRTCGYLGNPQARPMVHGRHKEISS RVKHLKN >gi|307679309|gb|GL456418.1| GENE 29 25499 - 26266 290 255 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 222 1 219 223 116 31 1e-24 MKKIVEVNHVSKTYGRLNNKTEVLDNISFTVDEGEFVGIMGPSGAGKSTLLNVLSSIILP TAGIVRIAGQDILKMRDNQLSDFRRNEMGFIFQSFNLIDTLNVKDNILLPLAVEKVSLEE MDKRLLHVTSILGIQELLSAYPPEISVGQKQRVAAARALITNPKIIFADEPTGSLDSKSA TELLKYLAEINLHDDATILMVTHDPYTASFCNRILFIKDGAIFSEVVRQGSRKEFFNRVI DMQATIGGGGRANDF >gi|307679309|gb|GL456418.1| GENE 30 26256 - 28352 1512 698 aa, chain + ## HITS:1 COG:lin2220 KEGG:ns NR:ns ## COG: lin2220 COG0577 # Protein_GI_number: 16801285 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Listeria innocua # 2 693 3 642 646 189 25.0 2e-47 MIFKLSLKNLKAHVPNYLVYYISMTFAAVVYYCFRAIAYNQPLVAGAGRDIEIKRSLGLG STLVTIIILGFMLAANRFFIGKRSQEIGLYRLIGLRKSQVSLIFLVENLVLGFVSLINGI ILGVIFTKLFSMILAKVMFLEVPSFFYISWRSVIETGVAFAFMILIVCLRSIWMIYRYPL SQLMHQEKIGQINYSRLTKRRQFLGILGPICLLAGYFIAFDFRNLATGIVYKQLNDSLDI SIPMIITLTPFIILGLCVVGTYLFFRYTMYFIIRLFNHRKKWYYQDLRMITLGNAKRYLF KSSKTLTGLTLLIATALSGIGVMVFVYTISMHTVNSDGPVDFLVSQESYPKLKKVLDEAK DTKIKNEVTLSYKITGIERSLRIGQAQEEQETIEAVNVLSFSNYRNYQKINPYLNDLHLK NDQSVIYMDSFTNILSGMSRYESKLQFVEGEKAQLQQVLPNYLGNFLLQYSLPTIVVSDA LYQKVTKNSIQYQINAVNVDTKSREKLYEAVNKQIATEWQAPILYKYEKNNQQLSGFAKQ MPNEEVKNTQDDVTETWRLNMNDRYASLRYERKINGLTLYVSMFVAILALFITGSILMLR QLFSAVSERQDYVTLKRMGVSSKAITKQIYRQNSLIFFPPMVIGILHTTFAIYLLSQFIK SPGYLLVYLSCGILIIVYLIFYILTSAIYARMIRHIHF >gi|307679309|gb|GL456418.1| GENE 31 28556 - 28705 148 49 aa, chain + ## HITS:1 COG:no KEGG:EF2750 NR:ns ## KEGG: EF2750 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 49 1 49 49 67 100.0 3e-10 MKTTFQKILNNESLKFIGKTLFYSFIVIALIYLYHYKNINGGTFIYNEF >gi|307679309|gb|GL456418.1| GENE 32 28720 - 30240 1946 506 aa, chain + ## HITS:1 COG:SP2176 KEGG:ns NR:ns ## COG: SP2176 COG1020 # Protein_GI_number: 15901986 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Streptococcus pneumoniae TIGR4 # 4 504 6 514 516 487 50.0 1e-137 MEKVINMIQTIDEWARKEPQRPVYLTEEKVSTYGELKEKSDNLAAYLAELKTDKSAIVVY GELDFEMIVSFLGASKAGFSYIPIDAHTPKERIELILNVAKPTAVIAVHEWPELATEVPV ITAEELTEMMMHAPRHAPALMPVTGASNYYIIFTSGTTGVPKGVQISHDNLVSFTNWLLQ DFGLEEGARFLAQAPYSFDLSVMSIYPALALGGSLTPLPNEIINDFKQLFTRLPQLTIDV WVSTPSFIELCLMEPSFDGEHLPALRTFLFCGEELPKLTAEKLAARFPTAHIYNTYGPTE ATVAISAIEITQEVLKSVQRLPIGYVKEDTQIYIMEGMSKLPAGEIGEIVIAGPSVSKGY LNNPAKTAEAFFQLDGVPAYRTGDAGKLVDNLLQYEGRLDFQIKLHGYRIELEEVDHHLT NVSYVKQAVVVPKYQGNKVQQLIAYVVPQAHEFSSDFQLTKAIKQELATLTMDYMIPQKF VYVEQLPLTSNGKIDRKGLMNEVNAT >gi|307679309|gb|GL456418.1| GENE 33 30237 - 31442 1036 401 aa, chain + ## HITS:1 COG:SP2175 KEGG:ns NR:ns ## COG: SP2175 COG1696 # Protein_GI_number: 15901985 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane protein involved in D-alanine export # Organism: Streptococcus pneumoniae TIGR4 # 4 401 7 412 413 359 48.0 4e-99 MMNFPHMIPYNAPYYFVLLIAALLPMILTLAIKGTRWPWYQTLVTLVFLYISFGGEFWQQ GVALIVYVIYQTLLTWGYAAYRKNKNAGWVFYLAVFLAILPLVWVKVSPFMTGKTTLLGF LGISYLTFKAVQVVMDLRDGVMKEYHPFRYIQFLLFFPTISSGPIDRYRRFEKDLKNPPS AEKYLDFLEKGIFYLFLGFLYKFIISHYLGGVFLPHVEKMALAQGGLSWWTVGYMYNYSL YLFFDFAGYSLLAVGTSYLMGYDTPMNFNKPFLSWNIKEFWNRWHMTLSFWFRDYIYMRL MFFLMKKKVFKSRIVTSNIGYFALFLIMGIWHGLTWFYIAYGLYHATLICVTDAWLRFKK KHKDKIPSNKFTHAFAVFLTFQAVCVSFLIFSGFLDKLWFK >gi|307679309|gb|GL456418.1| GENE 34 31475 - 31711 483 78 aa, chain + ## HITS:1 COG:lin0971 KEGG:ns NR:ns ## COG: lin0971 COG0236 # Protein_GI_number: 16800040 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Listeria innocua # 1 78 1 78 78 82 65.0 2e-16 MNIQETVLNILEDITGTDEVVNNQDIQLFEEGLLDSLATVQLLVEIEGQLGIQVPVSDFD REVWGTPKQIIQQVEALQ >gi|307679309|gb|GL456418.1| GENE 35 31846 - 32985 1196 379 aa, chain + ## HITS:1 COG:lin0970 KEGG:ns NR:ns ## COG: lin0970 COG3966 # Protein_GI_number: 16800039 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) # Organism: Listeria innocua # 1 366 45 413 424 259 36.0 5e-69 MAPNVLKGNVIKNKAVASGKYVPFFGSSELSRFSAFHPSVLSEKYQRNYRPFLLGEAGTQ SLTQAMVIHSMGDAIANKKAVFILSPQWFVKKGVPNDSFGAHYSQLQTYQWLANLTELTS GDQYLAQRLTKFPVVQKDKVLMETLANLQAGQLPQRSQRDYFIMNLRFLNREDELFSQIG MVSREPIVEKDMKQLPATYNFNELDQLAGKIAAKAINNNKFEISNGFYRQRIKPVLPKLA HSQKKWDYRFSPEYGDFQATLEQLAEKNVDVLFVIPPVNKRWSDYTGLSQDMLQQVARKL KYQLQEQGFTNIADFSTCSNERYFMADTIHLGWRGWLAVDRQVDEFMKQPASKKLAYQID DRFYQTDWQQQNPLVLPQF >gi|307679309|gb|GL456418.1| GENE 36 33198 - 34280 1353 360 aa, chain + ## HITS:1 COG:BS_ysdC KEGG:ns NR:ns ## COG: BS_ysdC COG1363 # Protein_GI_number: 16079934 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Bacillus subtilis # 8 358 10 359 361 450 60.0 1e-126 MDAKEEKMLIDLTSAKGIAGNEDEVRSLFKKYAAPYADKFLYDGLGSIIAKNVGDKEGPK VYISGHMDEVGFMVTQITEKGFLKFQTVGGWWGQVMLAQQVQIKTTTGKVYHGVIGSKPP HVLTAEVRNKPYEIADMFIDIGASSDQQVAEWGIHPGDMVTPYIDYRRMNDTKFLLAKAW DNRIGTAVSLKVLENLATEGHPNILFAGSDVQEEVGLRGAQTSTHLVNPDIAFALDTGTA GDTPGMTPKEADSVLGEGPQILIYDASMIPHKKLRDFVIQVAEENNIPFQYTVITGGGTD AGRMHLTRNGIPSLAITVPVRYLHSHTSVIHEDDYFNTVKLVTEVVKRLDKETVAKLTSY >gi|307679309|gb|GL456418.1| GENE 37 34301 - 35092 776 263 aa, chain + ## HITS:1 COG:no KEGG:EF2743 NR:ns ## KEGG: EF2743 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 263 1 263 263 432 99.0 1e-120 MKSLVTNSQHRANARRALDGQWGIMAWLTFLGVVLQSFLTSIVQNLFSGENQVFQSSFAA VLLQIFVLFALSYALYYAALKVLRGEKVRVNILMSVFQGKYYGPLFVVNLLQKVLERVIG LLFLLPILFGAGTTLYFKLMFNTVTPEEIQAFFLNDFSFFLAFGVASILIFLIGLFVSGV FQFAVWLRFDNPELPIMMALKQALYLMKNRFWQYLCLQFSFIGWYIVGFLAIGIGLLWVI PYNYVALASFYQTALEEKGLAEE >gi|307679309|gb|GL456418.1| GENE 38 35238 - 35978 936 246 aa, chain + ## HITS:1 COG:SPy0208 KEGG:ns NR:ns ## COG: SPy0208 COG1234 # Protein_GI_number: 15674406 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Streptococcus pyogenes M1 GAS # 1 240 1 249 259 265 57.0 5e-71 MKLTVLGCLGAYPYKGEGTSSYLLESEGFHLLIDAGSTTLVRLENYLDPLKLDAVILSHY HHDHIADLGVLQYYRQLYPTLEPTPILPIYGHTQDQMHFKELTLSNVSEGKEYFEAEELA VGPFLITFMETIHPVTCYAMRIVEKATGKVFVFTGDSGYLASFEDFAKDADLFLADTYLF EGNERHHAHFTSREAGEIAKAAQVKQLMLTHLPQHGSLEQLREEAQNYAGTEIPVTLAQP DLTVEI >gi|307679309|gb|GL456418.1| GENE 39 36011 - 37015 1080 334 aa, chain + ## HITS:1 COG:BH0683 KEGG:ns NR:ns ## COG: BH0683 COG0095 # Protein_GI_number: 15613246 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Bacillus halodurans # 1 334 1 330 330 402 60.0 1e-112 MIFVPNENNDPRVNLAIETYLLTEMPLDEPILLFYINEPSIIIGRNQNTIEEINKEYVDE HGIHVVRRLSGGGAVYHDHGNLNFSFIMPDDGNSFRDFAKVTQPIIQALHDLGVEGAELK GRNDLVINDMKFSGNAMYATNGRMFAHGTLMFDSDIDEVVNTLKVRKDKIESKGIKSVRS RVTNIKPFLSEDKQDMTTEEFRQEILLKIFGVDSIDQVKTYELTDQDWAAINKISEQYYR NWDWNYGKSPAFNLERRHRFPIGSIEMKMNVADGAIQEIKIFGDFFGLGEIKDVEDILTG VKYDKASLEEAIDQIDVKKYFGNIEKEDLLGLIY >gi|307679309|gb|GL456418.1| GENE 40 37631 - 38320 841 229 aa, chain + ## HITS:1 COG:SPy1391 KEGG:ns NR:ns ## COG: SPy1391 COG4122 # Protein_GI_number: 15675315 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Streptococcus pyogenes M1 GAS # 3 227 10 233 235 226 52.0 3e-59 MRNEMMHRPVVKPELVEYMRTKQKKLPGELGAVEAEANEAGVPIIPHETVVFLQFLLGQL KPKNILEIGAAIGFSSSLMAQFVGEDGHVTTIDRFDVMIKKAKKTYQRLDLEEKVTLLEG QAAEILPTLEGPYDFIFMDSAKSKYIEFLPECLRLLPVGGVLMVDDVFQAGTILDPAEEV PKKNRAIHRKLNQFLDVVMAHPDLTSTLVPLGDGVILITKEKETIILDS >gi|307679309|gb|GL456418.1| GENE 41 38561 - 39124 695 187 aa, chain + ## HITS:1 COG:TP0509 KEGG:ns NR:ns ## COG: TP0509 COG0450 # Protein_GI_number: 15639500 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Treponema pallidum # 2 187 3 188 188 235 55.0 3e-62 MNLINQKLFDFECDAYHDGEFTRVSTEDILGKWSIFFFYPADFSFVCPTELGDMQEHYAH LQELNCEVYSVSEDSHYVHKAWADATETIGKIKYPMLADPNGQLARFFGVLDEASGMAYR ASFIVSPEGDIKSYEINDMGIGRNAEELVRKLEASQFVAEHGDKVCPANWQPGEETIAPS LDLVGKI >gi|307679309|gb|GL456418.1| GENE 42 39221 - 40903 1954 560 aa, chain + ## HITS:1 COG:FN1984_1 KEGG:ns NR:ns ## COG: FN1984_1 COG0492 # Protein_GI_number: 19705280 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Fusobacterium nucleatum # 3 315 2 315 332 355 58.0 9e-98 MTEEIYDLIIIGGGSAALSAGIYAGRAMMDTLIIEKDKIGGQVTTTSEIVNYPAIRHTTG PELMEEMRIQAQDFGVAFTKDEIIDVDFSQTIKTVQSASQTYQAYAVLIATGASARKIGF PGESEFTGRGVAYCSTCDGEFFQGLDIFVIGGGYAAAEEAVYLTRYGKSVTMIIREPDFT CAKLTAEAAKNHPKIKIVYNTEVKEITGDDFVRKAVFVNNQTGEETVYEAPKDSTFGLFV FAGNKPSTEIFEGKIALDRGYVPTTENMETNIPGVYAAGDLRIKELRQIVTAVADGAIAA THAQRYVTEQKTQAGQPIVTKRMTERLANQSAPETSSQQPKEKQPAKVTGKHQWFPESMR QQLSGIFAKLTKKVTLLQFLDASDEKSLELQSFLTEFASLDQKITLETILKDTEPAKELL YGIEKMPSVVLLDTAGNYTGIKFSGIPSGHEVNSLVLAVYNVGSEGQPLEASLQKNILAL PKRKIEIFVSLTCHFCPDVVTACQRIASINPHVEAEMVDISLFPELKKEKKIMSVPAMLI DGEQMIFGSKTMTEIIEALA >gi|307679309|gb|GL456418.1| GENE 43 41319 - 42278 206 319 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 5 307 11 315 317 84 27 7e-15 MTYTHLTSNELAMIEAYYNNHQSVAKTAVLLNRSRQTIHKVYQFFKTGHNALDYFNQYKK NKTRCGRRPIVLSDEQTEYIQKRVVQGWTPDVIVGRAEFSISCSMRTLYRMFKQGVFEGT HLPMKGKRKANGHKETRGKQSFRRSLRDRGNDYSKFNQEFGHLEGDTIVGKKHKSAVITL VERLSKVIITLQPEGRRAIDIENRLNQWMQSVPKHLFKSMTFDCGKEFSNWKSISNINDI DIYFADPGTPSQRGLNENSNGLLRKDGLPKQMDFNEVDESFIQSIASKRNNIPRKSLNYK TPIEVFLSHICKEELSNLI >gi|307679309|gb|GL456418.1| GENE 44 42341 - 42658 139 105 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|307290259|ref|ZP_07570175.1| ## NR: gi|307290259|ref|ZP_07570175.1| hypothetical protein HMPREF9509_00563 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9509_00563 [Enterococcus faecalis TX0411] # 1 105 1 105 105 150 100.0 3e-35 MYSILYLFTDSLKNAWRSKNQFSTLILIFIISFLTFSALLLTLLFSRWLSQMILLDNYAV IPPLTIFRGLAGISAGTLFFFLISYICRTFFLTFLDADCKIKLDK >gi|307679309|gb|GL456418.1| GENE 45 42779 - 43312 547 177 aa, chain - ## HITS:1 COG:CAC0738 KEGG:ns NR:ns ## COG: CAC0738 COG0847 # Protein_GI_number: 15894025 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Clostridium acetobutylicum # 1 159 1 158 306 128 43.0 6e-30 MNFYAFDFETASYDKHSACSIAIVKVENSRIVDEFYTLIKPETPFFWRNTQIHGIHESDV VNAPKFPEVWQQIQHCFQPNRLVVAHNASFDCSVLAGCLDYYGLEQPNYLSLCTVKTSRK LFPEFPNHKLNTVCENLNITLNNHHDALEDSRACAEILLQQEQRFGVEPLKKLVLVK >gi|307679309|gb|GL456418.1| GENE 46 43346 - 44101 751 251 aa, chain - ## HITS:1 COG:FN0047 KEGG:ns NR:ns ## COG: FN0047 COG0708 # Protein_GI_number: 19703399 # Func_class: L Replication, recombination and repair # Function: Exonuclease III # Organism: Fusobacterium nucleatum # 1 251 1 251 253 385 73.0 1e-107 MKCISWNVNGLRAVVKKNFMDVFNELDADFFCLQETKLQAGQIDLELPGYHQYWNYAEKK GYSGTAIFAKEEALSVRYGLGIETHDQEGRVITLEYPEFFMVTCYTPNSQAELKRLAYRM TWEDAFRAYLNELNQEKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEERQKFTELLDS GFTDTFRYFYPEAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDILGS DHCPVEVVLDF >gi|307679309|gb|GL456418.1| GENE 47 44308 - 45222 945 304 aa, chain + ## HITS:1 COG:lin1972 KEGG:ns NR:ns ## COG: lin1972 COG0673 # Protein_GI_number: 16801038 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Listeria innocua # 1 298 2 298 301 192 36.0 9e-49 MKIGVIGLGNIAQKAYLPTYSECRHLAEFVLATRNPETRQKIADQYGFTETVGTIEELIE AKIDACFVHVATKVHGAVVRQLLQAGIHVFVDKPLSEELAEVKELQALAAAKNLRLMVGF NRRFAPYTEVLKNIPEKQTIFIKKNRINTTRETSFMMYDLFLHVVDTAVYLAEGPLHVVQ SKLVEENGHLKRAILQLETEQTTIVCSMDLHSGANTETFEVTSPTGTYRLENLTHLTIQT EEEYQVKEMGDWTPTLEKRGFYQMVTAFIQAIQKPQEQELKQEKVYESHALCEEMLRQQQ RHVL >gi|307679309|gb|GL456418.1| GENE 48 45294 - 46196 1300 300 aa, chain + ## HITS:1 COG:lin1459 KEGG:ns NR:ns ## COG: lin1459 COG0812 # Protein_GI_number: 16800527 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Listeria innocua # 13 299 11 297 298 335 59.0 6e-92 MNTKAMLETLNEITLLVDEPLKNVTFTKTGGPADVLALPKTKKEVEEIVAYCREQGLSWL VLGNASNLIVRDGGIRDVVIMLTEMKEIKVAGTTMIVDAGAKLIDTTYEALAADLTGFEF ACGIPGSVGGAVYMNAGAYGGEIKDVFQSAEVLLADGTIQTMTKEDLNFRYRHSEIQELH CIVLQATFALEKGNHAEIKAQMDELTELRELKQPLEYPSCGSVFKRPVGHFTGKLIQDAG LQGLKWGGAQISEKHAGFIVNIDHATATDYVELIAHIQEVIKEKFDVELQTEVRIIGEEV >gi|307679309|gb|GL456418.1| GENE 49 46270 - 46908 653 212 aa, chain - ## HITS:1 COG:lin0562 KEGG:ns NR:ns ## COG: lin0562 COG0517 # Protein_GI_number: 16799637 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Listeria innocua # 1 210 1 210 211 254 61.0 1e-67 MLLKSVVIKKDNLTTVNESCTLEEALSILEDSGYRCVPILDESGKIFRGNIYKMHIYRHK ANGGDMSLPVTYLLKNATKFIYVNTSFFKVFFTIKELPYIAVLDENNYFYGILTHSTLLN ILAQSWNVKQGSYVLTIASVGQQGDLAAISKIIAKYSSIASCITLDVDSEEFVRRTLITL PAGTTAETCTAIVEHLERKNFKVVELENLEDE >gi|307679309|gb|GL456418.1| GENE 50 47121 - 47243 61 40 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MREPQTEQARAAFFVAMFFDLLYSQIYFLTVPLFEKVVKV >gi|307679309|gb|GL456418.1| GENE 51 47194 - 47346 267 50 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29377208|ref|NP_816362.1| ribosomal protein L33 [Enterococcus faecalis V583] # 1 50 1 50 50 107 100 6e-22 MATKKAALACSVCGSRNYSKSVSEGKRGERLEINKFCKYCNQYTLHKETK >gi|307679309|gb|GL456418.1| GENE 52 47367 - 47537 295 56 aa, chain + ## HITS:1 COG:no KEGG:EF2730 NR:ns ## KEGG: EF2730 # Name: secE # Def: preprotein translocase, SecE subunit # Organism: E.faecalis # Pathway: Protein export [PATH:efa03060]; Bacterial secretion system [PATH:efa03070] # 1 56 1 56 56 87 100.0 1e-16 MKFFRSVADEMKQVTWPTKKQLRKDTLVVIETSILFAALFFIMDTVIQTAFGWILK >gi|307679309|gb|GL456418.1| GENE 53 47662 - 48207 759 181 aa, chain + ## HITS:1 COG:BH0118 KEGG:ns NR:ns ## COG: BH0118 COG0250 # Protein_GI_number: 15612681 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Bacillus halodurans # 5 180 2 178 178 218 62.0 5e-57 METFERNWYVLHTYSGYENKVKANIESRAQSMGMGDYIFRVVVPEETEKEVKNGKEKEIV HKTFPGYVLVEMIMTDDSWYIVRNTPGVTGFVGSHGAGSKPAPLLQEEINHILRSIGMST RQSDLEVALGDTVKIIEGAFSGLEGVVTEIDEEKQKLKVNIDMFGRETSTELDFEQVDNI D >gi|307679309|gb|GL456418.1| GENE 54 48327 - 49205 943 292 aa, chain + ## HITS:1 COG:lin0949 KEGG:ns NR:ns ## COG: lin0949 COG4814 # Protein_GI_number: 16800018 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Listeria innocua # 29 292 36 298 300 184 37.0 2e-46 MKHAQKYRYFSLLMGLVLLLSACQIGASTKNDNQAATKEATVELNRTTTPTLFFHGYAGT KNSFGSLLHRLEKQGATTQELVLLVKPDGTVVKERGALSGKATNPSVQVLFEDNKNNEWN QTEWIKNTLLYLQKNYQVNKANIVGHSMGGVSGLRYLGTYGQDASLPKIEKFVSIGAPFN DFIDTSQQQTIETELENGPTEKSSRYLDYQEMINVVPEKLPILLIGGQLSATDLSDGTVS LSSALAVNALLRQRETQVTSQIIKGENAQHSQLHENPEVDQLLIEFLWPSKK >gi|307679309|gb|GL456418.1| GENE 55 49298 - 50020 392 240 aa, chain - ## HITS:1 COG:no KEGG:EF2727 NR:ns ## KEGG: EF2727 # Name: not_defined # Def: phosphosugar-binding transcriptional regulator, putative # Organism: E.faecalis # Pathway: not_defined # 1 240 1 240 240 434 99.0 1e-120 MNLDYLKETYHLTKTESQILYYLDQQSTNAADLSIREVAKHCFSSPSSIIRLAKKLNLSG YNELIYKLKEAHFSQPIPFETAPSFETTNEFCQLLAKHKSHLFVILGHDFSRHLAAYISE VFNFHGIPSITTAYTHSINSQNNQNFLFIILSHSGEEKYLKETALLAKEKKHPIISFVGA KNSTLGRLADLVFSTDSYSPFSTSVAQPQMFFGQTLITFEALICAYLNHEDSIPISPKNK >gi|307679309|gb|GL456418.1| GENE 56 50098 - 51726 1636 542 aa, chain + ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 30 533 41 550 559 365 39.0 1e-101 MKRATKQRLSLAAIMVLLLSGCGSVGKETKKQEQQVLRVGIDSELSTADVSLAMDNTAAD VMSQVGEGLFSFDEKGEAKPALATEKVQPSNDGLSYTFTIRKDAKWSNGEPITANDFEYS WKRTVDPKTASPQAYYFEGLKNYRAIVDGGKSKEELGVTAIDDHTLEVELSYPMSYFQQL LAVPAFYPLNEAFVEKTGKNYGTSAESTLYNGAFTLEGWDGTNNTWSYVKNKNYWDQANV SLDKVDVQVVKEVNTGKNLFEGKELDVVKISGEIVAQEQDNAALKIREIPGTYYIQLNTQ KDLLANKNARRAIALSLNSERLAKNVLNDGSKKALGFVPTGFTNQETQKDFAEELGDLNP SEPEKAKELWQTAKKELGIEKAELTILSSDTENAKKISEYVQGALADNLENLTVNVSPVP FNNRLEKSRSGDFDIVVGGWTPVYADPIDFLNLLQSKNSNNFGKWSNKTFDQLLQEANVT YANKYEERWKTLQKADQLVAEEAPLVPLYQLTEARLVADSVQNLVYGPLGSGYYKSVSIS DK >gi|307679309|gb|GL456418.1| GENE 57 51740 - 52843 1085 367 aa, chain + ## HITS:1 COG:BH3132 KEGG:ns NR:ns ## COG: BH3132 COG1363 # Protein_GI_number: 15615694 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Bacillus halodurans # 5 357 6 358 361 217 34.0 3e-56 MKKSQAVQLIQELSNANGVSGFETEVVRILQHATADFTIQRLDAIKNLYLEKKNNLSEGP VVLFDAHSDEVGFMIQAIKENGLLRFLPLGGWVPNTISAQKVRIRNREGNYLPGVVTSRP PHFMTPEERQRPLTIADLTIDIGATSKEEVIETYKIDLGAPVIPDVTCCYNEQTDLFLGK AFDCRIGCACLVDVMEELKEETLPFKLVATVTAQEEVGERGALIAAKQVNPDLAIVFEGC PADDTAETPEMIQSAMGKGPMLRYFDVSMITNPEFQEYALEIAKINKIPVQVSVRSGGGT NGMAITQVQGAPTIVVGIPVRYAHTPHCYVDFQDYQAAKELVIQLIKNLDADKIQALVQP LSKEWNK >gi|307679309|gb|GL456418.1| GENE 58 52840 - 53685 944 281 aa, chain + ## HITS:1 COG:PH1582 KEGG:ns NR:ns ## COG: PH1582 COG2362 # Protein_GI_number: 14591360 # Func_class: E Amino acid transport and metabolism # Function: D-aminopeptidase # Organism: Pyrococcus horikoshii # 1 281 1 274 278 125 29.0 1e-28 MKIYVSCDIEGLAGIATFDMEKEDTVLFRELYHQHVAWLIEGIQKSAKNEQITEITIADS HSRGLNLAYARLAEMDERISLVSGFPRMDYMMSGLDSSYDVVFFLGYHAGIGKQKGNMDH GYSASVAYDLKINDLAMNETTINAAYASELGVPVGLIIGESGLEEQLFQEKMMPEVPFVS TKESLGRYAIKNRPMQQVREAIVATTSQVLTSFALSELPKYTLQTPATVKLQCVTTAQAD RIEMLPMIKRIDGRTVSFVGETMKDVMNGIVAVVGLGGTSY >gi|307679309|gb|GL456418.1| GENE 59 53750 - 54622 1204 290 aa, chain - ## HITS:1 COG:L44083 KEGG:ns NR:ns ## COG: L44083 COG1760 # Protein_GI_number: 15672813 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Lactococcus lactis # 1 286 1 286 287 331 65.0 1e-90 MFYSIEDLVAQAKDYPSVSELMIATEMAHGGYSRERIIETMEKNLAVMKQSVAEGIAGVT SVTGLTGGDATRLNDYIHSGNFLSGETILQAVRNAIAVNEVNAKMGLICATPTAGSAGVV SGVLLAVIDRLKLTHQQQLDFLFTAGAFGLVIANNASISGAEGGCQAEVGSASAMASAAL VAASGGTPDQSAQAVAITIKNMMGLICDPVAGLVEVPCVKRNALGSSQAFISADMALAGI RSVIPPDEVIHAMYQVGRQMPQIFKETAEGGLAVTPTAQRLSKEILEKQK >gi|307679309|gb|GL456418.1| GENE 60 54645 - 55346 707 233 aa, chain - ## HITS:1 COG:L43452 KEGG:ns NR:ns ## COG: L43452 COG1760 # Protein_GI_number: 15672812 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Lactococcus lactis # 12 233 1 223 223 291 61.0 1e-78 MKTYSNEEGAEMEELRFNSVFDIIGPVMIGPSSSHTAGAARIGKVVRSIFGQQPDSVDIY LYESFAKTYRGHGTDIALVGGLLGMEPDDEQLANSLEIAYEQGMEVCFIPKSEKADHPNS VKIVVSSGDRKLSVTGISIGGGNIQISELNGFKLSLSMGTPTFIVVHQDVPGMIAKVTNI LSASDINISTMTVTRESKGEKAIMIIEVDQAEVGDIVMQLAEIPHIYSVNYFD >gi|307679309|gb|GL456418.1| GENE 61 55689 - 57185 1536 498 aa, chain + ## HITS:1 COG:L119564 KEGG:ns NR:ns ## COG: L119564 COG0488 # Protein_GI_number: 15672881 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Lactococcus lactis # 1 497 1 511 513 479 50.0 1e-135 MSKIELKQLSFAYDNQEVLLFDQANITMDTNWKLGLIGRNGRGKTTLLRLLQKQLDYQGE ILHQVDFVYFPQTVAEEQQLTYYVLQEVTSFEQWELERELTLLNVDPEVLWRPFSSLSGG EKTKVLLGLLFIEENAFPLIDEPTNHLDLAGRQQVAEYLKKKKHGFILVSHDRAFVDEVV DHILAIEKSQLTLYQGDFSIYEEQKKLRDAFELAENEKIKKEVNRLKETARKKAEWSMNR EGDKYGNAKEKGSGAIFDTGAIGARAARVMKRSKHIQQRAETQLAEKEKLLKDLEYIDSL SMDYQPTHHKTLLTVEELRLGYEKNWLFAPISFSINAGEIVGITGKNGSGKSSLIQYLLG DFSGDSEGEATLAHQLTISYVRQDYEDNQGTLSEFAEKNQLDYTQFLNNLRKLGMERAVF TNRIEQMSMGQRKKVEVAKSLSQSAELYIWDEPLNYLDVFNHQQLEALILSVKPAMLVIE HDAHFMKKITDKKIVLKS >gi|307679309|gb|GL456418.1| GENE 62 57308 - 57730 679 140 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29377197|ref|NP_816351.1| ribosomal protein L11 [Enterococcus faecalis V583] # 1 140 1 140 140 266 99 1e-69 MAKKVEKIVKLQIPAGKATPAPPVGPALGQAGINIMGFTKEFNARTADQAGLIIPVVISV YEDRSFTFITKTPPAAVLLKKAAKIEKGSGEPNKTKVATVSSDQVKEIAELKMADLNAAD VEAAMRMVAGTARSMGIIVE >gi|307679309|gb|GL456418.1| GENE 63 57842 - 58531 1156 229 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29377196|ref|NP_816350.1| 50S ribosomal protein L1 [Enterococcus faecalis V583] # 1 229 1 229 229 449 100 1e-125 MAKKSKKMQEALKKVDATKAYSVEEAVALAKDTNIAKFDATVEVAYKLNVDPKKADQQIR GAVVLPNGTGKTQTVLVFAKGEKAKEAEAAGADFVGDDDMVAKIQGGWFDFDVVVATPDM MATVGKLGRVLGPKGLMPNPKTGTVTMDVTKAVEEVKAGKVTYRVDKAGNIHVPIGKVSF DNEKLVENFNTINDVLLKAKPSTAKGQYIKNISVTTTFGPGIHVDQASF >gi|307679309|gb|GL456418.1| GENE 64 58854 - 59354 780 166 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227519497|ref|ZP_03949546.1| 50S ribosomal protein L10 [Enterococcus faecalis TX0104] # 1 166 1 166 166 305 99 2e-81 MSEAAIAKKESLVQAAAEKFESAASVVIVDYRGLTVEEVTNLRKQLREAGVEMKVIKNSI LSRAAKKVGLDGLDEVFTGPTAVAFSNDDVVAPAKIIDEFAKDAKALEIKGGVIEGKVSS VEQITALAKLPNREGLLSMLLSVLQAPVRNVAYAVKAVAEKNEEVA >gi|307679309|gb|GL456418.1| GENE 65 59417 - 59785 571 122 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29377194|ref|NP_816348.1| ribosomal protein L7/L12 [Enterococcus faecalis V583] # 1 122 1 122 122 224 100 3e-57 MALNIENIVAELETATILELSELVKAIEEKFDVSAAAPVAVAGPAAGGAAEEQTEFTVEL TAAGDQKVKVIKAVREATGLGLKEAKAVVDGAPAPVKEAVSKEEAEALKAALEEVGASVT VK >gi|307679309|gb|GL456418.1| GENE 66 60036 - 60899 509 287 aa, chain - ## HITS:1 COG:no KEGG:EF2713 NR:ns ## KEGG: EF2713 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 33 287 1 255 255 383 99.0 1e-105 MKKMFLGLFCFVSITTLSVSNVWAEDSANEASVEKSTVTSLTQETSATTINASTDSTALT AESEELPSLRQTLLNYVGMYGLTETLINRLSDDELDYAKKVSFHFVNQDISGTARMITKL YGEKPIPEDSYSTDYSTLTIDDLKNYLPQIRLSLIYVYDLNSDVVNNLSDQTLVDLINQV KVDYANQNYPSDVRGDYGLAAMADKIKANDYTSINQSAESVSSDTTNTESTLQTTTSSSK KTTTSSSTEHKKGIFPSTGEKKSVLFTIIGIILLSLVSIFIIKNKKK >gi|307679309|gb|GL456418.1| GENE 67 61228 - 62058 605 276 aa, chain - ## HITS:1 COG:BH2229 KEGG:ns NR:ns ## COG: BH2229 COG2207 # Protein_GI_number: 15614792 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Bacillus halodurans # 6 275 2 279 287 98 28.0 1e-20 MQNVFTNNVSILINDQPISQEFHLYEAGYEKCRPTKPTEFAPINYWVLHYCSDGEGYFST PFMEKQHITAGDLFMIPANCRNIYYPNRQNPWTYHWVGFVGDLSSQYLEKIGLTTENCIL KGTVDKKLESLFKNIYQEAKKHNHFGSLSESFQLLNYLEHHSVTQHENQSQQLFNQIKMA IHENFSNNLSISQLASEYNIDRSYLFKLFQRYEQTNPSIYVQNLKLQKACSLLRKSSLTI TEISFEAGFSSPSYFSKFFFQKKEMTPRQYRQQFLT >gi|307679309|gb|GL456418.1| GENE 68 62207 - 63706 1524 499 aa, chain + ## HITS:1 COG:ECs3960 KEGG:ns NR:ns ## COG: ECs3960 COG0531 # Protein_GI_number: 15833214 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli O157:H7 # 1 478 1 457 477 337 41.0 3e-92 MATHSRERLGSVALMLMTFSAVFAFPSIVNNSIQIGLATIPGYLFGSIFYFLPFILMIAE FASANSENESGVHSWLESVLGPKWAFLGAWSYFFVNLFFFCSLLPNTLIYGSYAFLGQNV FQGNHSTKIIAVISILLFWLMTWVCIKGVSWISKVTSLAGGARLFMGVAFVVLAFVVVFG FGNEPAQEFTTTSIMPTFNWTFFMTMAWILQAVGGGESIGVYIKDVKGGNKTFVRTMIGA TIAVGIMYILGAVAVGLVVPTDVLKGNFSNGIFDIFKILGTYFHIPAVMMVRLVGIILFV GSLGSLALWTAAPVKVFFSEIPDGVFGKWLVKTNEEGNPTNALLVQGIIVTILVAIPALG IGNMDSFLETLINMTASTSLVPVLFLLIAYIGLRWKKETMPRSFRFGNRTFGLIAGIFLL AIFIFVFFMSTVPDPKLIMEEINGTLPKGTASPLGMLAYNIIGLIVFMGFAWICWKRYET KEKNEVGKGEMDYEDLGKL >gi|307679309|gb|GL456418.1| GENE 69 63684 - 66761 3115 1025 aa, chain + ## HITS:1 COG:ECs3958 KEGG:ns NR:ns ## COG: ECs3958 COG3250 # Protein_GI_number: 15833212 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Escherichia coli O157:H7 # 1 1015 13 1023 1042 735 38.0 0 MKTWENYKVDSINRLPGRAHFSSFPSKETALLNENKYTQAYKNLNGRWHFLFLEAPEYSP ENFFATDFDTSQMDQITVPGNWQVQGYGKMHYSDLWYNFPINPPYVPTENPTGIYKRTFA IDETFHDKKIILRFCGVDSAYHVWVNGHEVGYSKGARNEAEFDITPYAKIGETNDLTVRV YQWSDGTYLEDQDMWWLSGIFRDVELLGVPENGLEDFFIISDLDDSYQNGHLAITGKFWQ DKGQQVQLELMDQQGKTVLKETVAGNQGKVEFSASLPSVTAWSAEKPYLYQLFITVFSEG EVVEVIPQKVGFRNIHVSGETFLVNGVAIKLKGMNRHDYNPKNGRVVSREEIEKDIRLMK QFNINAIRTSHYPASAYFYDLCDEYGMYVIDETDLECHGFELTGEYDWISNDPEWETAYV SRMVRMIQRDKNHPSILFWSLGNESAFGHNFIEMARIAKEMDPTRLVHYEGDFEAEVTDV YSTMYTWLEHPTRELLMNTIIENSKKPHILCEYCHAMGNGPGNLKEYQELFYAHDKLQGG FIWEWFDHGIESVTDNGEVYYRYGGDFGDDPSNKDFCIDGMLMPDRTPSPSLYEYKKVIE PITTSAIDVLSGEFSLLSRFDFENLAIFKLVYTITEDQTVIQSGTVAVPAIAARAEGRLH LPYHLDFPKKAGAAYYLTLSYQLKETTAYASAGHELATAQFELPIATPGIEITPVGSLMA KEIGPHLYIEGPNFSINFDKVKGALTNVTRDGKKLLHKGPKFTFWRAPISNDMEIIDEMK KKYFLHLEHEIVRSFEWKKVDDFIQVIVKTINGTTNSAWHYQCTYQYLIAPNGEIFFDLK GSPAGKIENAPDMLPRLGGTLHLDKSLSEVKYFGKGPRENYVDSQEAGLLGVYDAIVAEM FTNYVVPQANGNHMATKWSAFTDDRGQGVVATAADSYNFSVSYFEEQALDVAKHTNELQE SEYVVLNIDYKQNALGSYSCGQWQLEKYRTTFEEFQLAFRLTPFNNKEIQAADVAHERVK RPTIS >gi|307679309|gb|GL456418.1| GENE 70 66942 - 67190 425 82 aa, chain + ## HITS:1 COG:L144047 KEGG:ns NR:ns ## COG: L144047 COG2261 # Protein_GI_number: 15673874 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 4 82 2 80 80 77 73.0 7e-15 MHTLWVLIVGAVIGAIAGALTSKGQSMGWIANIVAGLVGSFIGEKILGSWGPHVAGMAIV PSIIGAVILVAVVSFFFGRKNS >gi|307679309|gb|GL456418.1| GENE 71 67262 - 68632 1499 456 aa, chain - ## HITS:1 COG:lin1815 KEGG:ns NR:ns ## COG: lin1815 COG2265 # Protein_GI_number: 16800882 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Listeria innocua # 1 456 1 457 457 525 56.0 1e-149 MTQQLVKKGQQISLKIKRLGINGEGIGYYKKLIIFVPGALPKEEVTATITNVTPKFAEGT LQSVKKAAKDRVVPPCPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYEL RKTIGMENPWNYRNKAQFQLRQIDGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLV DLLNDFQLPIYDERKNSGIFRTLMVRVGIQTGEVQVVFITQSQKFPQKEKMVRAINEQLP EVVSIMQNVQNKKTSLVMGDDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYN EGIKALDLQPNETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNT HYAVGTAEDLLPKWFKEGFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLA RDLVQLAKVYQVDYLQSVDMFPQTARCEVVVKLTRK >gi|307679309|gb|GL456418.1| GENE 72 68764 - 69564 841 266 aa, chain + ## HITS:1 COG:BS_yfhG KEGG:ns NR:ns ## COG: BS_yfhG COG2137 # Protein_GI_number: 16077919 # Func_class: R General function prediction only # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 261 1 263 264 132 34.0 6e-31 MTTITRISKDKGEFYLLWLSSGEKLRVSEDILVRQRLLKGQELSDTLIEEIKKASSYDVG LQMAMNYLSYQLRSKKEIFTYLKEKEIVPEDRVKIVQRLEELRLLDDAIFSESYVRTAMR TSDKGPRNVAQQLKQKGISEEDIQHGLTFYTLDEQLNVATATAEKAMKRYRTKSFKDALQ KTRLHLMQKGFTNEIIDLALESLAFEKDEEQEQQALNKEGERLWRANQRFDFSKKVQKVK QSLFQKGFDYDLIQQFISEKEVEHDE >gi|307679309|gb|GL456418.1| GENE 73 69554 - 70738 1183 394 aa, chain + ## HITS:1 COG:SP1228 KEGG:ns NR:ns ## COG: SP1228 COG1194 # Protein_GI_number: 15901090 # Func_class: L Replication, recombination and repair # Function: A/G-specific DNA glycosylase # Organism: Streptococcus pneumoniae TIGR4 # 10 389 2 373 381 361 48.0 2e-99 MTNKEPWEAWSPAKVSSFQEDFLAWYEREKRNLPWRANTDAYRIWISEIMLQQTRVDTVI DYFYRFMEWFPTIQDLAEAPDDKLLKAWEGLGYYSRARNLKVAAQQIVSEFGGKMPGTIE DIRSLKGIGPYTAGAIGSIAFNLPEPAIDGNVMRVVSRLFEIDADIAKASSRKVFEAAML KIIDRERPGDFNQALMDLGSAVCTPTSPKCESCPLQQYCAAYQADKMTAYPVKSKKVKPK DVYYVGTIIENKKQEFLLEQRPETGLLANMWLFPIEEISKKQFQQLQKLAQPAETEKQLT LELEPVTEPLVAEEPVNFFTDYETVVWQKRALGEVVHIFSHLKWHILVFYGRNTGELATL ESQRWVAAQQFSDYVFPKPQQKMVELFKKEHKNK >gi|307679309|gb|GL456418.1| GENE 74 70919 - 72043 1125 374 aa, chain + ## HITS:1 COG:lin2662 KEGG:ns NR:ns ## COG: lin2662 COG1316 # Protein_GI_number: 16801723 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 3 309 17 333 349 156 33.0 8e-38 MSRKRKISLISLVIILVFVTVGSAYFAVAGSYLKKTIDKGYVPIKNDYNEAQNKDSQSFL IMGLDNTIERKLGTTRTDAMMVITVNNKTKKITYLSLPRDSFVQIDAKNYQGMQRIEAAY TYDGPTASVNTVEKLLNIPINHYVVFNFLSFIKLIDAVGGIDVNVKQAFDGVTKDGPGSI HFDAGKQHLDGTKALSYARERHSDNDIMRGFRQQEIIQAVEDKLKSGQSIMKIMDIIDSL NGNIQTDVDSNELTHLVKEGLTWTNYDKQQLSFDWRTFSNEGRSMVELYPDSIENVRHQL RVSLNLEKPDERDQDGYVFHTNGEFLYQSDYTVQDEAAEENEMTSINGNTYIGVPGNTQT GPLPSVKTENGFIK >gi|307679309|gb|GL456418.1| GENE 75 72235 - 72666 550 143 aa, chain + ## HITS:1 COG:no KEGG:EF2702 NR:ns ## KEGG: EF2702 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 143 1 143 143 272 100.0 3e-72 MFSYTDTILSIMQRIEVYNEIFKAISKEVQEYGCNQAAHRRGRDTYMFCRNNVNRFFTEE MMFRKNLEPYYDKEATKILLEGLDTYKEGVFFWLEALSESCQVTDELKYQLGIRQKESSY LLINQACKEACEGIQSAHSVHKM >gi|307679309|gb|GL456418.1| GENE 76 72831 - 74351 493 506 aa, chain + ## HITS:1 COG:VC0422 KEGG:ns NR:ns ## COG: VC0422 COG0312 # Protein_GI_number: 15640449 # Func_class: R General function prediction only # Function: Predicted Zn-dependent proteases and their inactivated homologs # Organism: Vibrio cholerae # 163 361 258 472 481 70 28.0 1e-11 MYQYFHSLNIEVNKTVCNSKISSFFIKKDHLGNTDYECHDEDFNNNYFYLKFLDLKKNLK EIKSILETFETDIRLFIFRKREVIKINEITDIRWTEYFRMVFLHNETSTYEDYDISLLLN LESFIELIQRKEQEFIKLIKLPILKENIDINLYDWLFMPAIGGYFIHETVGHLLEMDNKG TYRLDQVVAGKFLDVIDTFYDYENLIGLNRYDDNGIRLEAIKLITKGTIKNFLGDRGSLR KENFSFVSLPRMRATVVENSDFFNESDLSRLKKNNDHLKIQQIYGGGVDVGSGHYQLLVR GIVVIKNKDMYRIENLILEGKSTESLKRIIYVGKDKNCKHAYCYKKNQMVDVVVGSPTLY LKNGEKMKKLKKILEELKITKDYAYCTLTSIKEYNEFNKTIDGPKVLYIATLKGENLEYI YMYYHDCLSIKYILDNFKNFKIKEKNHHTLKQLPIKNYYCFSNSVNKDSWKIDFFDSNNN NYCCIREETRNFFIIREIKKIRSKKT >gi|307679309|gb|GL456418.1| GENE 77 74964 - 75488 665 174 aa, chain - ## HITS:1 COG:L36177 KEGG:ns NR:ns ## COG: L36177 COG0454 # Protein_GI_number: 15674159 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Lactococcus lactis # 3 173 2 167 169 124 38.0 1e-28 MTVYLRKAEPSDLPDILAIIEDGRRTLQKSGIPQWQNGDGPNQEILAKDIDQQTCYILMV EDALAGVGVLCSEIDPAYEAIFNSSWQPHSQTTYTAIHRVALKSSFQGQGLALVLLRSLV TAARLQGATDIRIDTHPQNFAMQHLIKKAGFVYQGDVILDVNDGERYAYQMILK >gi|307679309|gb|GL456418.1| GENE 78 75505 - 76326 911 273 aa, chain - ## HITS:1 COG:CAC1777 KEGG:ns NR:ns ## COG: CAC1777 COG1051 # Protein_GI_number: 15895053 # Func_class: F Nucleotide transport and metabolism # Function: ADP-ribose pyrophosphatase # Organism: Clostridium acetobutylicum # 34 265 25 294 307 124 33.0 1e-28 MPQFASKAEEKNYYERQASLAEFLTWYHQQELPEYEKPSLTVDMVLLCYNKEADQLKVLL IQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLHSFSRPDRDPR GWVVTVSYLAFIGEEPLIAGDDAKEVHWFNLERHGQHITLSHEDVEITLDLKTAASLGKD TLAFDHSEIIIKAFNRVVDKMEHEPQVLQVLGKDFTITEARKVFAKFLGVDYRSIDHSNF KKAMTQYFEELGERPVGIGRPSKIYQLKTTTSF >gi|307679309|gb|GL456418.1| GENE 79 76489 - 77676 1581 395 aa, chain - ## HITS:1 COG:lin2081 KEGG:ns NR:ns ## COG: lin2081 COG3853 # Protein_GI_number: 16801147 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in tellurite resistance # Organism: Listeria innocua # 1 393 1 398 399 377 62.0 1e-104 MTEQQPKETTSVTNTLDDLLSNPFSSMDELTPTQQNELSELKEQQAAPRLIDKLPQERQA QAKELASKIDVQDSQAVITYGSNAQIKLGEFSQAMLNHVQAQDIGPVGDSLTDLMFRLNE ANPNELRAGEGNFIQKMLGKVKQSVYEITAKYQKIGAQIDKIAVKLTHEKDGLLKDNAML DQLYQKNKDYFDALNIYIAAGELKAEELRTQIIPEAMKKAEESGDQMDVQIVNDYNQFLD RLEKRTHDLRLARQITIQQAPQIRLIQNTNQALAEKIQSSVNTAIPLWKNQVVIALTLLR QKDAVTAQRQVSETTNDLLKKNSEMLKISAIETAKENERGLVDIETLQKTQNDLIETIQE TLRIQQEGKEKRQAAEIELGHMEEDLKNKLLELTQ >gi|307679309|gb|GL456418.1| GENE 80 77696 - 78376 818 226 aa, chain - ## HITS:1 COG:lin2080 KEGG:ns NR:ns ## COG: lin2080 COG4915 # Protein_GI_number: 16801146 # Func_class: R General function prediction only # Function: 5-bromo-4-chloroindolyl phosphate hydrolysis protein # Organism: Listeria innocua # 71 226 62 217 219 88 28.0 1e-17 MNKLNTKLLIGYILLGALIIAVAREYGFFAFVILVGFLVFVLYRKKKNAADKSDQMPYLT KDKEAHYRELGLSPQEIDFFRSTMSTAKKQIIQLQENMNRSTKLRAIDLRNDTTKVSKAL FKELVKEPKKLHLANHFLYTHLPNIVDLTSKHLEIEQHEVKNKQTYEKLEESAQIIDQLS KLVKNDYEEIVSDDLDDLDVEMSIAKSSLSQKAATEESPQVNEDQQ >gi|307679309|gb|GL456418.1| GENE 81 78761 - 79345 589 194 aa, chain + ## HITS:1 COG:lin2079 KEGG:ns NR:ns ## COG: lin2079 COG0494 # Protein_GI_number: 16801145 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Listeria innocua # 5 185 2 180 185 181 54.0 5e-46 MLNYEDFEEKTLQRREIFKGKIIDVFLDDVALPTGGTAKRELVFHSGAVAMIPLTAEGKI VLVKQFRKPLEQVILEIPAGKIDPGEENQLETTAMRELEEETGYRAGQLTYINSMYLSPG FANEKLALYLATDLQKVENPRPQDEDEILELYELTIAEAKAEVAKGTICDAKTLFAIQYW ELYLLQRQFKEDTQ >gi|307679309|gb|GL456418.1| GENE 82 79342 - 79638 398 98 aa, chain + ## HITS:1 COG:no KEGG:EF2695 NR:ns ## KEGG: EF2695 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 98 1 98 98 103 100.0 2e-21 MSKGPLVTRTELRKRREAEEKEAERRQQEEQKLAEKAYKRKEKEISTFYRKEKKKQKPIN KSRVGEYSKRRERSTWLNKAIIIVAILLAVVAYIVLNL >gi|307679309|gb|GL456418.1| GENE 83 79654 - 80349 994 231 aa, chain + ## HITS:1 COG:L132777 KEGG:ns NR:ns ## COG: L132777 COG0775 # Protein_GI_number: 15673862 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Lactococcus lactis # 3 231 36 259 259 217 53.0 1e-56 MKIGIIGAMDQEVKILKEKLTDTMSWERAGALFVSGSLGRHEVIVVRSGIGKVASAVTTT LLIHQYGVNMVINTGSAGGIGEGLKVGDLVIADKLAYFDVDVTGFGYAYGQLPGGVPLYF ETSEYLRMEIAKAAEKTGLAIRKGLIVTGDTFVDSAEKIAKIKKEFPEALACEMEGAAIG QAASQFNIPFLVVRAMSDTADGEATQSFDEFIDEAGKKSAEMVIHFVENLV >gi|307679309|gb|GL456418.1| GENE 84 80416 - 80682 319 88 aa, chain - ## HITS:1 COG:lin0209 KEGG:ns NR:ns ## COG: lin0209 COG2827 # Protein_GI_number: 16799286 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease containing a URI domain # Organism: Listeria innocua # 1 84 1 82 90 83 64.0 1e-16 MENKKSHYFYVLLCQDGSFYGGYTTEPERRLTEHNSGTGAKYTRLAKRRPVKMIHTEKFE TRSAATKAEAAFKKLTRKQKEQYLKTFH >gi|307679309|gb|GL456418.1| GENE 85 80672 - 81406 824 244 aa, chain - ## HITS:1 COG:SPy1411 KEGG:ns NR:ns ## COG: SPy1411 COG4123 # Protein_GI_number: 15675331 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 243 5 247 258 280 55.0 1e-75 MLLSGERIDQLYADDIKIIQSKEVFSFSIDAVLLANFPQLPKKGKIVDLCAGNGAVGLFV SRKTAAKIDQIELQPRLADMGQRSILLNKLEKQVTMYERDLKQATEVIKKDSVDLVLCNP PYFKERPTSQKNPNPHLAIARHEIHTSLQEVVTVSADLLKTNGRLAMVHRPDRFLDILHA MENANIAPKKARFVYPKPGKEANVLLIEGIKQGKKDGFRVLPPLFTYNEKNEYEAEMKAM LYGE >gi|307679309|gb|GL456418.1| GENE 86 81381 - 81443 65 20 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNNQMKSWRFLIYVIIRRTD >gi|307679309|gb|GL456418.1| GENE 87 81595 - 82221 805 208 aa, chain + ## HITS:1 COG:SP1624 KEGG:ns NR:ns ## COG: SP1624 COG0204 # Protein_GI_number: 15901460 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 195 1 196 249 244 57.0 8e-65 MFFTFMRGVVRVILFVINGNAHYENKEKLPKDQNYVLVAPHRTWWEPLYLAVAGSPKKFS FMAKKELFKNPVLRFILKHANAFPVDREKPGPSAIKTPVKILKNSDLSLIMFPSGTRHSS ELKGGVALIAKMGRVPIVPSVYQGPLTLKELFKRKKVTVRFGEPIDISDIKKMDKDGLAE VERRMQEAFDQLDKEIDPTFKYESTEKE >gi|307679309|gb|GL456418.1| GENE 88 82405 - 83541 1014 378 aa, chain + ## HITS:1 COG:L0327 KEGG:ns NR:ns ## COG: L0327 COG0420 # Protein_GI_number: 15673304 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Lactococcus lactis # 1 378 1 390 390 265 41.0 1e-70 MKFLHTADWHIGKKLHGFDLLAEQKEAFKQILAIAKEEQVDAVVIAGDLYDRSVPAVEAV EIFNEMMIQMNLKEHFPVLAISGNHDSSTRLETGGPWFNQTQFHLNTRLEQAFQPIEIDN TQFYLLPYFEPIAARLYFEDETIRTIQAAMEKVVAKMQESFLPNKKQVLVSHFFVAGSEK TDSETKLTVGGLDVVPTALLEPFDYVALGHLHGKNALQAPNARYSGSPVKFSLSEMTQEK GVWLVETEDEVHFQFRALKPLRDIQQLTGSFQQLTDPAFYQEVNRENYLHVQLTDRAIIP NMMNQLRKIYPKIIGLERLNGRETSSGNQKKVVQIEQRSPEEHLHDFFNDVTGEALTEQQ AQWVQEELSTLNQLERGK >gi|307679309|gb|GL456418.1| GENE 89 83546 - 86683 3669 1045 aa, chain + ## HITS:1 COG:L152588 KEGG:ns NR:ns ## COG: L152588 COG0419 # Protein_GI_number: 15673303 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Lactococcus lactis # 1 1040 1 1041 1046 310 29.0 1e-83 MKPLSLTLKNFGPYINETIDFTKFEDSSLFLISGKTGAGKTTIFDGMSYALFGESSGKLR LGKEMRSTFADPSEATEVTLLFKHNEFLYELNRLPEQELFKKRGTGVRKQSAKISLIVKD AQGKELRAYSKRREVDELIQELLHLNANQFAQIVLLPQGEFRTFLIAKSDEKEKVLRNLF GTELYQLFSENLKERLKIANQEIQETQQKIELKTEQLHWSEEPEPTMTLFEKLQLLESQQ QETQQQLLVEREQIATLKQAKQAKEQVRYAIEERQNLQQQKEELLEKKAKQAEQETVIER LKEQIQQLKWSQKQQPLAEKVFEKRSEKQQKEQETKSKQQALMETQQALTDWQAIMSELE EQQPLIAEKQERLQTIQRQLPQYQEYEQLAQQQIAEQANYQAIQKEYESCQQEKITLADK VATAKQFIEQEGTLEKANFECSSVADHWQNFVERWQKNQKAWQKISQNQVELHELTQRFA VEQQQKSAEEAKLQTKKSQWASLQIQRLSLLLEEGEPCPVCGSLEHPKQQTHQEVSLEEI DQAERELTEVEKTVQRFTETLSALGAEKQQKESQLQEQEAAYTEEQEQLAAQFADLQLPL TGLTFSQVTPAEIAEVESQLAKEKQQIAQKLTEISVEKDRLAELEEQVAENSQRVEVLRQ QVETMQQSLERITIQQQMIASQLLDATVTYEEMTKQQALLQEELSAFERQKENVTTQGET LKKEEMILESTLTHLEKEQQTLQQTVAQLESQLNAVLTEQGVTEDQLTEWLKEVPTLESQ QEQIALFEQEQTQLTIQLAEIEKKLSSDTFPELSLITTEIEQITQQIEEQEKKYYQLHEK MLNNQQLVQEINAQRTTIEDKFEEVVALQQLADTVNGNNPKKISFERYMLQTYLERVLAV ANQRLDRLTNSRYQFELNHEAGSYRNQTGLEINIYDDNSGTVRSAHTLSGGESFIAALAL ALSLAEVIQEQAGGVLIDALFIDEGFGSLDEEALEMAMEALETIENEGRMIGIISHIGEL KARIPQQLQIKSNGNGQSTVHYQLA >gi|307679309|gb|GL456418.1| GENE 90 86703 - 89900 3249 1065 aa, chain + ## HITS:1 COG:lin1685 KEGG:ns NR:ns ## COG: lin1685 COG0553 # Protein_GI_number: 16800753 # Func_class: K Transcription; L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicases, SNF2 family # Organism: Listeria innocua # 5 1063 12 1065 1072 637 35.0 0 MKWSIPERIVEQGREYMQEGRVLSIVQNPEKRIWLSEVLGEELYLVELDGTAKEQDVCEC QYWMEHGYCKHTVAVELALKQRGVSRIIQANQTVSFEKTNRSTAEMFTKGFAKLSKASAE VPLQPLRLEFHLDVIETNNYYPELSTIGLSLKIGLEGTKPKTYIVKNIGDFLQAYEKEMT FMVNKQHQFTLLHDSFSMEIQEILTELAAIYHTSQLLGANGIQVKGKIDKRYLLLPIDRS QSLVEKMNRTGQFILTNQTHKYRYLTFKETSLPLTFTVQKTEEQSFKLTIQNPITTFLAH YHWAIADQTVYLLTEEQEAIYTTLLQLMKRLEEPSIIYEKETVSDLFSEVLPLLEKIGRV SVEESVEELVVHHPLKAVFIFKKIKGRINARIDYHYGEVIFSTNPKYAQLPEVNQEIVRD KAKETAIKQQFQQFAYQQTTTGFEKVLPAGESLYYFFKAEVPAFRQLGEVRMGRKLRELY LDAQHHQPTIEVAEGDSWLDIRFDVTGIDETEIDAVLTSLLRNDAFYTLKSGEILAFDSE EFFHTSAILTKLRKNMHQEDNVIHVPKNQGLMIESLLEDNERAHFSDSFKKMVTDLTHPE NFEAQVPKTLQATLRHYQKTGYKWLKMLSHYQFGGILADEMGLGKTLQTITYLLSEKEEE RLKGTALIVAPASLTYNWLAEVKRFAPTLNVQVVSGNRQERAALLQNSTEDILITSYASM RQDVQLYQEMRVGYLILDEAQMVKNSGTKTAQALKSLKVPQRFALSGTPIENNLDELWSI FQMILPGLFPGKKAFREIKPEEIAKMIQPFILRRDKKTVLADLPEKIENNMYSVLTEEQK TVYLAYLKQMQADVSQMDQATFKKNRMSILAGLTRLRQICCDPRLFIEDYTGGSGKVEQV KDFLVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFNEG EKDVFLISLKAGGTGLNLTGADTVILYDLWWNPAVEEQAAGRAHRMGQKKVVEVWRMIAE GTVEEKMNSLQQEKRELFQKVIQGNEEQLAKMTEEDIRTILSIGE >gi|307679309|gb|GL456418.1| GENE 91 89950 - 90321 535 123 aa, chain + ## HITS:1 COG:no KEGG:EF2687 NR:ns ## KEGG: EF2687 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 123 1 123 307 221 99.0 1e-56 MKQKEYMEYRPLGEEIERIRKGKNIPLRVFDENGVSSRSYQRFVQGNSELRISDLAIIVE ILSISPMEMTEKLTPMSKTVLAKEQFNQAIFSKNFQESSRIVADYRAYYDKSSFALGKQE VMY >gi|307679309|gb|GL456418.1| GENE 92 90322 - 90873 562 183 aa, chain + ## HITS:1 COG:no KEGG:EF2687 NR:ns ## KEGG: EF2687 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 183 125 307 307 312 100.0 3e-84 MLALEYLFNPQTVVTKEEIIALENQILERLINADVYTIFNLKFLALQKNVGLQPFPTSLL FRVLQSVNEREIIDIRSLEIIEQVIIDFLFAAIVSQNVPHILHVLSMFKEYEVGENNWRM ILWKKIAEKIEMILTNEEIFADWSIFKEQILLSITLFLPKAKQEFFAGQLEKIEDSLKEI KEN >gi|307679309|gb|GL456418.1| GENE 93 91073 - 93244 2119 723 aa, chain + ## HITS:1 COG:lin0372 KEGG:ns NR:ns ## COG: lin0372 COG4886 # Protein_GI_number: 16799449 # Func_class: S Function unknown # Function: Leucine-rich repeat (LRR) protein # Organism: Listeria innocua # 110 473 39 384 656 162 32.0 2e-39 MKKMCISAVSALLLGNSLLLPVTTFAETTETIASSSEENVSSVSEEKIPETSSAEEQNSA TSSSEIPQSEELTTVETSEEPPNEALAITEAQLMMPQLYAGAVLDKATPISTLFPDPAFA ENIRKQLSKSRTSNTVTQAELDKLNKVILENVVVSNVEGVQYLRNLEELSFQDSLNITDL SPFAKGEFKLLRFLYMRNNKIADLSPLGQAGLISLEGLYVENNQLTTLNGLEGMAALKNL SIQNTTDHPSKITPNNRVTSFDPLRSLRNLETIWAANNQIATLDGLTEANNLLRLYVENN QLKTIAPLANKPRLEELSIMNQTIASLEALSTVPNLRVLYARNNQISSLAPLEKTLNLTV LDVGENQISDISPLKGLTAITGLDVSNQMIILSSVNYIAGKPLQLKNKVVSRDGQLFPPL TISPYGSYDATKGLFEWNLPKAHEGVSYIWESTDKAYLGNFSGTVVQPVKEVFLSETKLS WSKERIEKSMEKTIDIDDFQKTALPFYWQDVDAGNRLQFIVKKEGQEIQKLADETTTNSK TFKEKALLLPELTYGKQQLVVEVYDKGYKIDELALTVTVVGSVRFKTVPTAISFGNELQI ASSTTQYPIVSMDQPLVIRDTRQTGNNWSLALTVTSDFKSESGATLPNILKFRTNHRLQD IPEGQSILVHNQVNGHQETNISDQWKENDQELLLSVPGGTAKAEEYEAKLTWHLMDVPDG SAK >gi|307679309|gb|GL456418.1| GENE 94 93281 - 93616 183 111 aa, chain + ## HITS:1 COG:no KEGG:EF2685 NR:ns ## KEGG: EF2685 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 111 12 122 122 203 99.0 2e-51 MLLGLISSVDVFAETNAYPTNAEVSFYGEYEPPANKEKPDGKIPQRFPKQSEAIPAVSGE SLKHSTSKTVDQKGSGFLPRTGTKQQQMFNYLGIIVIFMASFILKKRKKEQ >gi|307679309|gb|GL456418.1| GENE 95 93618 - 94400 953 260 aa, chain + ## HITS:1 COG:no KEGG:EF2684 NR:ns ## KEGG: EF2684 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 260 1 260 260 437 99.0 1e-121 MKKIILSTIPAITLGVAIAPEVNAEEKNYESNAIVEFTPDTSINKPVDPVNPDTEKPVEP FDPTTPDTGNKPNEGTTGPLSIDYASSLDFGKNKISNKDEKYYANPQYFFLADGSGPDLT NPKPNYVQISDKRGTNAGWALTVKQETQLTATKETLNKVLDGSEIKLSQNKAVSNSKAVT PTAHEVTLVAGDSSNVMSAAEGQGSGTWLSAFGGIEKVEVDGESVDKNTAITLTVPGATP KDAVQYKTVLTWTIADLPSV >gi|307679309|gb|GL456418.1| GENE 96 94440 - 95216 966 258 aa, chain + ## HITS:1 COG:no KEGG:EF2683 NR:ns ## KEGG: EF2683 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 258 1 258 258 443 99.0 1e-123 MKKMTIASSLILATIAVGTLPVQAEEVANRDTDAIVKFKAPDEKDPNSKNPVVDPEDKDG KDPVTPIDPVNPDKPVDEGYTGPLTLDYASSLNFGENIISTKDETYFASAQVLKDKNNVE KTGPLFAQITDNRGTLEGWTLSAKQNSAFTSATKGQTLEGTEIVFQNASAVTAGQSAAPT SLASVTFGTVGESHNVMVAATDQGAGKWSYLYGNASSIAEVDGRQVMKDVQLKVPGKSVK LNDAYKTTITWTLANTPV >gi|307679309|gb|GL456418.1| GENE 97 95291 - 96316 1030 341 aa, chain + ## HITS:1 COG:no KEGG:EF2682 NR:ns ## KEGG: EF2682 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 312 1 312 341 531 99.0 1e-149 MKNRYFILMILSFYFFAFGIETSAAELRFSVETEIPENQIDKTKTYFDLMMKPDQEQILK VRAANSTDENLVIDVSVKSATTNSNGVIEYGESLTALDKSAPADLSEIIQLKDGGESVEL PAKSEKVVELRVKMPKEEFSGQLAGGITFSEKVDETKDKQKENTNGLAIENRYAYTVAVL LRENETVVQPELSLEKVEPTQRNARSVISATLLNHEAAYLQSMKVTANVKNKKTNNVILE KEQEDMQMAPNSIFNFPIPYEENEMEAGTYVLAMTVEGSGKKWQFTKEFTISKEEAKTFN EKDVTVKKTESKLIYLLIGLLLLLLIICLFIILRLKKQKNK >gi|307679309|gb|GL456418.1| GENE 98 96354 - 97067 670 237 aa, chain - ## HITS:1 COG:SPy0596 KEGG:ns NR:ns ## COG: SPy0596 COG1011 # Protein_GI_number: 15674680 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Streptococcus pyogenes M1 GAS # 4 237 5 238 300 273 55.0 2e-73 MRTIVFDVDDTLYDQQQPFRNAMTKIFPNVATEDMHELYLRFRHHSDETFPKVLANEWSL DFMRFFRMNETLKDLNYPGISQEEGKIFQQVYEEELDNITMHPEVTKLLDTLQEKEIPMG IITNGPTDHQFKKVKQLNLEKWVPSQNIIISQSTGFQKPEKEIFDLACNQFCMEPEHTLY VGDSYDNDIVGARNGGWHSLWFNHRSRELPSCQPASHLAEVTCFTELCPTVEKLFNL >gi|307679309|gb|GL456418.1| GENE 99 97243 - 97329 83 28 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKYSDNEKFVKMILSQSYLNNTCSDRS >gi|307679309|gb|GL456418.1| GENE 100 97395 - 99113 241 572 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 346 556 14 227 245 97 33 6e-19 MLKRFFGYYRPYRRLFILDFGCAVFAGLLELAFPVAVNQVIDKIMPKGDFRLIALASAGL FAFYIINTFLQFIVVYFGHMLGVNIETDMREELYQHLQTQPFEYYDNQKTGKLMSRLTTD LFEISEVAHHGPEDVFITIMTLAGSFLLMLTIHVKLAIATFILLPFITIALGYFNKKMTK ANTDIYDNLGEFNAGIEASVSGIRVTQSFANEPFERKQFNYLNQMYRKSKLYFYKVMGVS SAYNYLLIRLINLFSLIFGAYYTIKGEITEGQFVGFILLANIFIRPIEKVNNMIESYPKG FAGFKRFTEEMDKQPSIKDLPGAVAVSHLEGTIAYKDVSFAYENGTKVLDHINLKIQPGE TVAFVGQSGSGKTTLCNLLPRFYEVSSGEITIDDRNNIQQMTLVSLRKQIGIVQQDVFLF PGTLRENIAYGNLNATEIDIQQAVKLAHLEHVIQLMPDGLDTIIGERGVKLSGGQKQRVA IARMFLKNPPILILDEATSALDTETEQVIQESLNSLADGRTTLIIAHRLATIKHADRIIV VSDQGILEDGTHETLYAQRGHYRRLYDAQFRT >gi|307679309|gb|GL456418.1| GENE 101 99157 - 100167 1016 336 aa, chain - ## HITS:1 COG:lin2301 KEGG:ns NR:ns ## COG: lin2301 COG0180 # Protein_GI_number: 16801365 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Listeria innocua # 2 336 3 331 331 466 70.0 1e-131 MKTIFSGIQPSGTPTIGNYIGAMKQFIELQNEYNCYFCIVDEHAITVPQEPQKLRQQIRS LAALYLAVGLDPQKATIFIQSEVSAHAEAGWIIQCNTSIGELERMTQFKDKSQKNGRAGV SAGLLTYPPLMVGDIVLYNADLVPVGDDQKQHLELTRDFVERFNKRYAQKNQEILTMPEV KIAEQGSRIMSLQEPTKKMSKSDTNVKGFISMLDEPAVIRKKIRSAVTDSTGVIEYNKEE KPGITNLLNIYSAATGQTVEELVQAYEGKGYGDFKADLAEAVVALLEPIQVRYQELLASE ELDMILDEGAENARQVANKTLQRMKNAVGLGRKVRR >gi|307679309|gb|GL456418.1| GENE 102 100527 - 100925 435 132 aa, chain + ## HITS:1 COG:lin2295 KEGG:ns NR:ns ## COG: lin2295 COG1393 # Protein_GI_number: 16801359 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Listeria innocua # 1 129 1 129 131 194 79.0 3e-50 MLTLYTSPSCTSCRKARAWLQEHEIPFKERNIFSEPLNIEELKAILIMTEDGTEEIISTR SKVFQKLNMDLDELPLQDLLELVQENPGLLRRPIMIDEKRLQVGFNEDEIRRFLPRDVRQ LELRQAQLMAGL >gi|307679309|gb|GL456418.1| GENE 103 101268 - 101930 844 220 aa, chain + ## HITS:1 COG:lin2294 KEGG:ns NR:ns ## COG: lin2294 COG4862 # Protein_GI_number: 16801358 # Func_class: O Posttranslational modification, protein turnover, chaperones; T Signal transduction mechanisms; N Cell motility # Function: Negative regulator of genetic competence, sporulation and motility # Organism: Listeria innocua # 1 218 1 217 217 91 30.0 1e-18 MEMEHINENTIRVLIGNEDLADRGITFLDLLGNHKDVENFFYSILEEVDVEDEFQGSEAV TFQVLPKNDGLELFISKNVAMDDLSSLEGLSEVNADVSELIRKQIEADKAAADELDEMEA TDETNRNVIFELDNFEAMIQLSKEVFMQSVLTNLYTYNDRYYLQVLFLTDELEKTNVDNE IAQILEFAHKTTVTQDTLVEYGTCIMERSALELTRYYFND >gi|307679309|gb|GL456418.1| GENE 104 102019 - 103197 382 392 aa, chain + ## HITS:1 COG:L168238 KEGG:ns NR:ns ## COG: L168238 COG4469 # Protein_GI_number: 15673710 # Func_class: R General function prediction only # Function: Competence protein # Organism: Lactococcus lactis # 1 288 1 282 329 156 37.0 6e-38 MLTALTADNQELFSLIDCSIDELTQIRSEQAFVCPMCHQSVILKAGPIKIPHFAHRKKNS CWYEAEAETEEHLRLKQLFAEKCLREKLSFQVEAYLPALKQRPDLLIGKIAIEIQCSPLP IKRLVERTETYQTHGYQVVWILGERLVPKDKLTQLTKQFLYFSESLGFYLWSANKKQERI ELLCHIEESQCQQFYRRKQSWDFYEKKLLEIFRLPTANLNLLPDRRHTGQLMHDYYQKLT QQLGYRNAQLLRTQSFLYTKGCHLLQLPPWFYYPGLKLLPSSEEDIHLKMLVWEALKTKE GRLVTKQELWRILEAVFLEEGNFVWQPLPNIGLKKLFKIVGNSLLSWLQECYVLIKVNNK YLITSIFLREDPEKLIHWLKKVKKQHFFSHTC >gi|307679309|gb|GL456418.1| GENE 105 103245 - 105056 2154 603 aa, chain + ## HITS:1 COG:lin2292 KEGG:ns NR:ns ## COG: lin2292 COG1164 # Protein_GI_number: 16801356 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Listeria innocua # 1 601 1 601 601 666 57.0 0 MSEIKQLPTRDEVPTPLTWDLTKIFKDDASFDVAYNQLTEELNQAESFKGTLGNGAEAFL AALEYVLDVYRKVETLYVYSHLKNDQDTTNTAYQALYARASSLYAQVSEAVSWFDPEVLT LSDEQIWGYFEEQPKLAVYRHYIQNILDERPHVLSMEQEALLAGASEIFGASSNTFSILN NADLEFPTVQNAEGETIQLSHGVYGQLMESVDPSVREAAFKGLYKVYKQFRNTLASTLGA HVKTHNYKAKIRNYDSARAASLASNHIPESVHETLVAVVNKHLPLLHRYVKLRKKLLNVE ELHMYDLYAPLLGEAPIRYSYEEAKEKAIEALKPLGEDYLSIVKEAFSSRWIDVIENQGK RSGAYSSGAYDTAPYILMNWHDSLDQLFTLVHEMGHSVHSYYTRNNQPYVYGDYSIFLAE IASTTNENILTEYLLQTETDPKVRAYVLNHYLDGFKGTIFRQTQFAEFEHFIHTEDAKGT PLTSEYLSEYYGELNAKYYGPEVVRDEEISYEWARIPHFYYNYYVYQYATGFSAASALSK HILAGEEGALEKYLNYLKAGSSDFPIEVMKKAGVDMTQAAYIEDAMKVFEERLTELEALV EKL >gi|307679309|gb|GL456418.1| GENE 106 105150 - 105809 654 219 aa, chain - ## HITS:1 COG:lin0963 KEGG:ns NR:ns ## COG: lin0963 COG2761 # Protein_GI_number: 16800032 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis # Organism: Listeria innocua # 2 160 17 176 272 74 32.0 1e-13 MVEIYLFVNPLGGVCLEIEKEIIQLSVNDKKKIQLRFIPLLNMKTINEFLSRQHIPINDI KRRNRIFEDLYSAALDYKAAQLQGRKKGRQLLIGLQKAVAEDGLAYSPELSEELLLAAGG DIDMYRKDRQSDFVKESFQTDQKVAREMGIKQHPTAVVYNYTCKNDFGILVENFENMDEI KQLCRVHPHNELLLDQGDATFEFKRRSNYHFPNGHLHLL >gi|307679309|gb|GL456418.1| GENE 107 105873 - 106451 603 192 aa, chain - ## HITS:1 COG:lin0964 KEGG:ns NR:ns ## COG: lin0964 COG4116 # Protein_GI_number: 16800033 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 185 1 184 194 134 41.0 1e-31 MSEHLEIEFKTLVSPQDFKRLIDHFSIQKTDFFTQTNHYFDTDDFQLKAQRMGLRIRVLA DRGELTLKVPAPEGLLEINDPLSLETANHFIKRNHLPTEGAVAKKLQELGIEIASIHLIG SLKTARAEKQIPQGLLALDESWYNQQHDFELELEVTEAESGKQAFQTLMADLNIPITLAP NKIQRMMRTTAP >gi|307679309|gb|GL456418.1| GENE 108 106648 - 107322 807 224 aa, chain + ## HITS:1 COG:lin0966 KEGG:ns NR:ns ## COG: lin0966 COG2357 # Protein_GI_number: 16800035 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 5 205 4 204 222 263 72.0 1e-70 MEREWELFLAPYEQAVSELKVKLRGIRKQFREQDKHIPIEFVTGRVKPVDSILTKTAIRH IPLNRIEEEMQDIAGLRIMCQFVEDIYQVVALLRNRKDLKIVEERDYIENKKESGYRSYH VVVEYPVQLVTGEKIILAEIQIRTLSMNFWATIEHSLNYKYQGVFPEEMKERLQRAAEAA YLLDEEMSSIREEIQEAQHYFSHGRGLLENEYYKQIKNETPENQ >gi|307679309|gb|GL456418.1| GENE 109 107335 - 108132 692 265 aa, chain + ## HITS:1 COG:L166614 KEGG:ns NR:ns ## COG: L166614 COG0061 # Protein_GI_number: 15672345 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar kinase # Organism: Lactococcus lactis # 2 264 6 268 270 268 52.0 9e-72 MKVAIVHNSEEKSKQVTKQLTTLLEQNQIQIDNRQPELVISVGGDGTLLSAFHRFNHLLN EVSFLGVHTGHLGFYTDWRDYELKELVESLCIHREKSTSYPLLDVRIRFRDGKPDKHFLA LNESTIKRGNRTMVGDVFIKDELFERFRGDGLSISTPTGSTAYNKSIGGAVLHPSINAFQ LTEIASLNNRVFRTLGSPIVIAHTEWLEIKLQESDDYFVTVDQLDIYQENIASVCYRIAD ERIHFASYRHMHFWHRVKDAFIGED >gi|307679309|gb|GL456418.1| GENE 110 108140 - 109033 261 297 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 39 285 41 279 285 105 30 3e-21 MEFQWTYDKETTQQVKYFLKEQGVSKGLLAKVKFQGGKIQVNGTVQNAIYPLQTGDVVKM TIPDEAEHETLLTDDEPIEIVFEDDHFLVVNKPAGIASIPAQYHPSGTMANRVKGYYKRQ NYVNQVIHVVTRLDRDTSGLMLFAKHGFAHALIDQELREKKVTKIYYALVGGAIEQLNEH QLIEKPIGRDLSSLLKRQVIETGQFASTEYWLAKRGAQAAAVRIQLHTGRTHQIRVHFEA IGCSLLGDEMYHGKMDQGIERQALHCMELIFTHPFTKETVHLISPLAEDMKSVDDTL >gi|307679309|gb|GL456418.1| GENE 111 109064 - 110425 1818 453 aa, chain + ## HITS:1 COG:SA0867 KEGG:ns NR:ns ## COG: SA0867 COG2239 # Protein_GI_number: 15926597 # Func_class: P Inorganic ion transport and metabolism # Function: Mg/Co/Ni transporter MgtE (contains CBS domain) # Organism: Staphylococcus aureus N315 # 2 453 6 461 461 408 47.0 1e-113 MNEGQEMEEQFALLLETLKNQQMNEFRELFLALHIYEQGQFYQSLDEKDRQHLYNYLSPK ELADMFDVIEEDNENMKDYLAEMRPSYAADMLAEMYTDNAVDLLNMLDKSQKAKYLSLLS SEEAGEIKELLHYEDETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ ENHLVGVISLRDLIVNDDDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYD DHLLGIVTVDDIIDVIDDEAASDYSGLAGVDVEEVSENPLKAASKRLPWLITLLFLGMST ASLISNYESLVSEASILAVFISLITGTAGNAGTQSLAVAVRRLAMKDEKDSNFGRLILSE VLTGLVTGAVTGLTIMIVVGVWQHNLPLGFVIGMAMLCAITVANLAGSLIPMLMDKLGFD PAVASGPFITTLSDLTSVLIYFNIASMFMRYFV >gi|307679309|gb|GL456418.1| GENE 112 110543 - 111172 895 209 aa, chain - ## HITS:1 COG:SP1260 KEGG:ns NR:ns ## COG: SP1260 COG3142 # Protein_GI_number: 15901120 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in copper resistance # Organism: Streptococcus pneumoniae TIGR4 # 1 209 1 209 210 225 53.0 4e-59 MIKEFCAENFTKIPQAIQKGANRIELCDNLAVGGTTPSTGVIEEVLAYAGEHSVPVMTII RPRGGNFVYNDIELKIMHTDLIEAKKLGTDGIVIGCLTEDGWLDEEALDLFIETAEGLQI TFHMAFDALSKENQFKAIDWLAERGVTRILTHGGPAGTPIEDNFDHLKELIAYADQRILI LPGGGISTENVQTVMDTLKVTEVHGTKIV >gi|307679309|gb|GL456418.1| GENE 113 111302 - 112147 696 281 aa, chain + ## HITS:1 COG:L55507 KEGG:ns NR:ns ## COG: L55507 COG0500 # Protein_GI_number: 15673975 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Lactococcus lactis # 1 280 1 273 273 230 45.0 3e-60 MLKKIERAQQLLKKEAAVFRCPTCHEPMHVEGVGLICQQRHQFDLSKKGTLYFLNHGVQT EYNKKMFTSRGKMIQSGMYAPVLNKIMHYLPQNKTVVDVGCGEGGFLTELSQAGLSGLKI GFDLSKEGIYLASNQPIDAFWCVADLTNLPFANEGLDTILNIFSPSHYQEFRRVLKADGT VIKIIPEENYLKELRAAFYPNDEKKQSYSNQKVVQRFAEELAVEVDERITYCFDIPEERR LDLLEMSPLEWQVSQEVKAELQQRPLEKITIDVRLLVGRKR >gi|307679309|gb|GL456418.1| GENE 114 112459 - 112965 591 168 aa, chain + ## HITS:1 COG:SP0486 KEGG:ns NR:ns ## COG: SP0486 COG0219 # Protein_GI_number: 15900400 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase (SpoU class) # Organism: Streptococcus pneumoniae TIGR4 # 1 167 1 166 167 237 67.0 6e-63 MTNHIVLFEPQIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITY HKDLAAFLAHVAGKHLHLVTKFAHQTYSEVNYNDGEDHYFLFGKETTGLPETFMRENEEK CIRIPMNDEHVRSLNLSNTAALIVYEALRQQNFPNLELTHHYENDKLD >gi|307679309|gb|GL456418.1| GENE 115 113182 - 113826 759 214 aa, chain + ## HITS:1 COG:SP0984 KEGG:ns NR:ns ## COG: SP0984 COG0406 # Protein_GI_number: 15900859 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 207 1 204 206 160 42.0 2e-39 MKLYFTRHGKTEWNQQKRFQGMTGDSPLLPTSYDEIKQLGQYLQDIPFEKIYSSPLLRAK NTARGIQQELTHPVEIVYTDTLKELGLGRLEGQYIEEMRNFYGEELDHLRHRLDLYDPTI FDGEPIEQAIQRISETVAEAAKQHEGPVLFVGHGAALTAAIQAMAGKPLSELRTMGGLLN NSLSILETKEASRNMPYDLTLWNDTSFLAKEKAQ >gi|307679309|gb|GL456418.1| GENE 116 113853 - 116462 3044 869 aa, chain + ## HITS:1 COG:L180415 KEGG:ns NR:ns ## COG: L180415 COG0507 # Protein_GI_number: 15673722 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Lactococcus lactis # 10 860 3 824 834 726 49.0 0 MVTLFGEDEEKAFIVGTVQAIFFENPSNFYKVVLVNVTDTNTDYLEKEIVVTGSFGQVQE EEPYRFFGHFVDHPRYGRQFQVDSYQQERPTSASGVVNYLSSDKFPGIGKRTAEKIVEVL GESAIDRIIDDPSVLEEVTVLNEKKRQVIVETIRLNHGMEQVIVGLNRYGFGSQLAFSIY QTYQEETLSVIQENPYQLVEDIEGVGFKRADNIAEQIGIQADSAVRIRAAILHEVFEHSI RSGNTYVQADVLLEEAIRTLEASRPVEISPDQVANEIITLVEHGKIQQEETKLFENSLYF SEWGIGTSIQRLLSRKKEIHYEEEEVQKNIRMIEKRLNIQYGDSQQAAIEEAIKSPLFIL TGGPGTGKTTVINGIVSLFAELNGLSLDLKDYTQEMFPILLAAPTGRAAKRMNETTGLPA STIHRLLGLTGREKNPSLTAKELEGGLLIVDEMSMVDTWLANTLLKAIPTNMQVIFVGDK DQLPSVGPGQVLHDLLQINEIPKCELNEIYRQGDGSSIIPLAHEIKEGKLPADFQKNQKD RSFFVSDIDHIEEYIRQIVTKAKAKGFTPQDIQVLAPMYRGAAGIDALNKMMQEIFNPND GKKKEVKWNDTVYRIGDKVLQLVNTPELNVFNGDMGEIVGITLAKDSEDKVDELVLQFDN NEVTYKRNEWNKITLSYCCSIHKAQGSEFRMVLLPMVHQYSRMLQRNLLYTAVTRSKELL ILLGEVSAFETCVKNESASRMTMLKERIVNAEQMTLTTRTQLEAYEEGLTADHPFTEKET KAVSYETEQQSTKANQIKETDEQLVDTTVQEVSLFADEGEESTPETANKATKVVEEPLPK EPRLTVEIIQTNAVDPMIGMKDTTPYQFM >gi|307679309|gb|GL456418.1| GENE 117 116529 - 117488 801 319 aa, chain - ## HITS:1 COG:L39484 KEGG:ns NR:ns ## COG: L39484 COG1597 # Protein_GI_number: 15673780 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Lactococcus lactis # 5 319 3 302 302 164 35.0 1e-40 MNIHYYLIINEQASSGNGRKVARKVIQQLKQQELKYTALYTDYAGHEKELTKELAETTLL PWSEDLDVSTFPILVVLGGDGTLHNVINSLLPYDSAIPLSYIPCGSGNDFARGVGLSRNI DKALHQILRTRRPKEIQTIHYVEANQEEIGLATNNVGLGLDAAIVEKTNESSSKKALNKF KLGSLSYISSIIHVFFKQKGFPILVEMNGKQYTFNRAFLCTVTNHPYFGGGVSIMPTANP RKAVVDLVVVERINIFKILWLIFLLLRQKQGKSKHFHHFQSSKIRIVSTIPQTIHADGEI LGKRSIDMVYTTQKRLFWF >gi|307679309|gb|GL456418.1| GENE 118 117751 - 118257 470 168 aa, chain + ## HITS:1 COG:lin0860 KEGG:ns NR:ns ## COG: lin0860 COG4708 # Protein_GI_number: 16799934 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 10 168 2 161 162 101 41.0 6e-22 MQNSFQANRKLRTVLANGIIMGLYIVLSLLVRPVSSGMIQFRISESLNHLVVFNRKLMWG VLGGVIFFNLFFGFGVIDALFGGAQTLFALSLTAFLQKKVPSIPVRMCLNSLFFTVSMFF IAFMLVPSGGQAFWTTYGWLALSEAIIMTISAPIMYFINKSLKFETRI >gi|307679309|gb|GL456418.1| GENE 119 118495 - 119700 1383 401 aa, chain + ## HITS:1 COG:SPy1205 KEGG:ns NR:ns ## COG: SPy1205 COG2348 # Protein_GI_number: 15675170 # Func_class: V Defense mechanisms # Function: Uncharacterized protein involved in methicillin resistance # Organism: Streptococcus pyogenes M1 GAS # 5 401 9 404 407 327 44.0 3e-89 MYTFKIGIPAEVHDTFVKNHPLCNLLQSSSWAKVKDNWGSEIVGVYEKDTLVASSLVLIK PLPAGFTMLYTPRGPVMDYTNERLVSYFMAELKKFGKKKRALFIKMDPAVHYQDFHLGEE HQPHAEATAIIETLKEAGAKYQGLTMDMGATIQPRFQANIYREDFSEEQLSKSTKKMIKT AEKKGVVVQQGHVDFVDEFEKVIQSTMERQHISLRNSDYFKKLLNIYPEDSFIMLAQVNL KERLDSTRQRYDKNQKDLSNLKENQVKKRHNLEELDASLTRELKELEENIAEAGEIVTVA GALAVTFGPTSEILYAGLDDRYKRYMPTYVTWRDAIQECFNRGCESCNMGGLEGSLNDGL IKFKANFNPTINEFIGEFDLPVNKLLFKASEYAYKLRKQKK >gi|307679309|gb|GL456418.1| GENE 120 119756 - 120391 649 211 aa, chain - ## HITS:1 COG:L166479 KEGG:ns NR:ns ## COG: L166479 COG4684 # Protein_GI_number: 15672553 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 9 186 11 189 196 89 36.0 6e-18 MNNTKKFTLTAMFLAILLLLALTPLGFITLGPLNSTTMHIPVIIGSIVLGPKIGSMLGGT FGIISLIKNTTAPTPLSFVFSPFIPVIGTDHGSWKALLIVLIPRILIGVVPYFAYKLLNK LTKEKAQPVSLFVAGVLGSATNTILVMNMIYFLFNSAYAEIIGKAGTAVYLAIIATIFSS GVPEALVAGVAASAIASVLLRLMKRNATQKL >gi|307679309|gb|GL456418.1| GENE 121 120395 - 120949 557 184 aa, chain - ## HITS:1 COG:SPy1222 KEGG:ns NR:ns ## COG: SPy1222 COG0452 # Protein_GI_number: 15675186 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Streptococcus pyogenes M1 GAS # 2 177 3 178 181 209 65.0 3e-54 MKTILLGVSGSISAYKAADITSQLAKLGYNVEILMTKSSTAFITPLTLQSLSKNPVHTDV MMEIDPSKINHIELAKKADLFLVAPASANTIGKLAHGIADDLLSTVALALYPETPKIIAP AMNTYMYQNPIVQRNIGILKEVGYQEIIPREALLACGDYGRGALATVEDILQTVMKILAS DNKE >gi|307679309|gb|GL456418.1| GENE 122 120946 - 121719 923 257 aa, chain - ## HITS:1 COG:SPy1221 KEGG:ns NR:ns ## COG: SPy1221 COG0452 # Protein_GI_number: 15675185 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Streptococcus pyogenes M1 GAS # 1 251 1 226 228 152 39.0 6e-37 MDVLVTAGGTSEPIDNVRSITNHSSGGLGKAIAESFLAAGHNVTYVTTKHALRPTQQLDL SIKEIETTVELATTLEQLFAEKQFDAIVHAMAVSDFTTEAAQTEEQFIDSFAQQLSEQTL PKTKEALVTIVQNTLNQIADIPQTATKISSDTDRLLIFLKKNPKVIQMIRDKQPQTVLVG FKLLVDVSQAELVQVAQAALVKNRCDFVLANDLMNVHETEHEGLLINETGIVQEACSKQG IGSMIVKNVEKKWREQQ >gi|307679309|gb|GL456418.1| GENE 123 121735 - 122727 1355 330 aa, chain - ## HITS:1 COG:SAP008 KEGG:ns NR:ns ## COG: SAP008 COG0604 # Protein_GI_number: 16119208 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Staphylococcus aureus N315 # 4 329 2 323 323 310 45.0 3e-84 MNSFQAFTLREQDTSVIGQLETITLDDLSEGTVVIKAAYSSVNFKDSLASKKDGGVIRNY PMIPGIDVSGTVVTSEDPRFKEGDKVIVTGYQLGVSHTGGYSEYVRVPGDWVVPLPEKMS LKEAMIFGTAGFTAGLSVTALEDDGLRDDKEAPIIVTGATGGVATLSIAMLHQLGYTSIT ALTRKPDSFGLLKELGVSECLLVEDFLATPVKALMKQRFAFAIDTTGGEITSAVLPQLRY DGRSAICGRAAGITLETTVLPFILRGVHLLGIDSVNVGMDKRKIVWQRLATDLDITEKAV YQEITLEELPPVFEALQAGQHIGRTIVRIS >gi|307679309|gb|GL456418.1| GENE 124 122991 - 123533 609 180 aa, chain + ## HITS:1 COG:lin0796 KEGG:ns NR:ns ## COG: lin0796 COG1396 # Protein_GI_number: 16799870 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 1 180 1 180 180 205 58.0 3e-53 MEIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEQ FFSQQPLEQKIVYNEEESTLYYDEEHGYELKWLIPASNEKEMEPVIITFDKNGEYKTFEP SLSETFIYVIDGSIRLTLGEATYIAKKGQTMYYQATEPHQISNNGRGKSRALIVATESYL >gi|307679309|gb|GL456418.1| GENE 125 123559 - 124644 1130 361 aa, chain + ## HITS:1 COG:lin0797 KEGG:ns NR:ns ## COG: lin0797 COG3842 # Protein_GI_number: 16799871 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Listeria innocua # 1 361 1 362 364 536 75.0 1e-152 MRNHVISFENVVKQFDDEPVLKNVSFEIEEGKFYTLLGPSGCGKTTILRIIAGFNDVTSG DVYFDGKRINDVPANKRQVNTVFQDYALFPHMNVFDNVAFGLKIKKLSKAEIEKKVKEAL RLVQLPGYETREISEMSGGQRQRVAIARAIVNEPKVLLLDEPLSALDLKLRTAMQYELRD LQQRLGITFIFVTHDQEEALAMSDEIFVMNKGHIVQSGTPVDIYDEPINHFVADFVGESN IVDGVMLEDNLVSFVGKKFECVDGGMRKNEPVEVVLRPEDLTITTLEKGKLTVTVDTQLF RGVHYEIICFDEQGNEWMVHSTRKAKEGAQVGLSFEPEDIHVMRFNESEEDFDARLESYD E >gi|307679309|gb|GL456418.1| GENE 126 124663 - 125469 826 268 aa, chain + ## HITS:1 COG:lin0798 KEGG:ns NR:ns ## COG: lin0798 COG1176 # Protein_GI_number: 16799872 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Listeria innocua # 2 264 3 264 269 347 73.0 1e-95 MKTMRRIYSIPYVMWLLLFVIAPVLMIIYQSFFDMNGQFTLANYQTYFTSGTYLSMTINS VWYAFLITIFTLLVSYPTAYFLTKLKHKQLWLMLVILPTWVNLLLKAYAFIGIFSIHGSI NQFMSFMGLGTHQILFTDFSFLFVATYIEIPFMIMPIFNALEEMNPSLISASRDLGASSA ETFRRVIFPLSLNGVKSGVQAVFIPSLSLFMLTRLIGGNRVITLGTAIEEHFLVTQNWGM GSTIGVILIVAMFIVMLLTGEKKKGRGK >gi|307679309|gb|GL456418.1| GENE 127 125469 - 126305 836 278 aa, chain + ## HITS:1 COG:lin0799 KEGG:ns NR:ns ## COG: lin0799 COG1177 # Protein_GI_number: 16799873 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Listeria innocua # 4 265 2 262 268 315 68.0 9e-86 MQKKKFKWSYVYLFVVFALLYAPIFYLIFYSFNDTQTMNQFTGFTLDNYRNVFEDTRLLT IVLNTFLLAFLSALIATIIGTFGAMGIYYTKRRKNRNTLLSFNNILLVSPDVIIGASFLI FFTAVGFISLGFTSVLLSHIAFSIPIVVLMVLPKLQEMNDSMVDAARDLGANNVQVIKNI ILPFLAPGIIAGYFMAFTYSLDDFAVTFFVTGNGFSTLSVEIYSRARQGISLEINALSAL VFLFSMILVVGYYFISKDNTPKRLKKMRREQSEVAKLK >gi|307679309|gb|GL456418.1| GENE 128 126302 - 127375 1250 357 aa, chain + ## HITS:1 COG:SP1386 KEGG:ns NR:ns ## COG: SP1386 COG0687 # Protein_GI_number: 15901240 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Streptococcus pneumoniae TIGR4 # 1 357 1 356 356 465 64.0 1e-131 MKKLQSLFIGIIAIIVILFFGVRQLEKASGMAGADTLTIYNWGDYIDPALIKKFEKETGY KVNYETFDSNEAMYTKIQQGGTAYDIAIPSEYMIQKMMKAKMLLPLDHSKLKGLENIDAR FLDQSFDPKNKFSVPYFWGTLGIIYNDKFIDGRQIQHWDDLWRPELKNNVMLIDGAREVL GLSLNSLGYSLNSKNDQQLRQATDKLNRLTNNVKAIVADEIKMYMANEESAVAVTFSGEA AEMLENNEHLHYVIPSEGSNLWFDNIVMPKTAKNKEGAYAFMNFMLRPENAAQNAEYIGY STPNKEAKKLLPKEVAEDKQFYPDDETIKHLEVYQDLGQEYLGIYNDLFLEFKMYRK >gi|307679309|gb|GL456418.1| GENE 129 127526 - 128209 394 227 aa, chain + ## HITS:1 COG:no KEGG:EF2648 NR:ns ## KEGG: EF2648 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 227 1 227 227 402 100.0 1e-111 MKRKTIRILLISSGLILILLVGYRLYLEYQTDIQLFLNPKASKTQLLERIRSHGFSAALL LVFLTAIMCAVPGIPTSVIGVIAGLSFGPFSGTLINVLGNSMGNLVAIFLMHHIKFLDKK TETNHWVQSIRRMKHPKIGIMVGYMIPIIPSSVINFAADTMQLPLKNLIAAIFIGVIPSS ILYACGGEALFHGYNKTAVLLIVSVLLFVGLVVIIEKDRKRFQKTVL >gi|307679309|gb|GL456418.1| GENE 130 128319 - 129611 1246 430 aa, chain + ## HITS:1 COG:CAC2835 KEGG:ns NR:ns ## COG: CAC2835 COG2610 # Protein_GI_number: 15896090 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism # Function: H+/gluconate symporter and related permeases # Organism: Clostridium acetobutylicum # 6 375 4 374 384 314 59.0 2e-85 MPDITISWVAAILGLVVAIVLILKKFNPVYSLFFGAIVGCLIGGASLSDTVAVLLNGTQS IMGTAIRVLAAGMLAGVMMESGAAESIANAIVQKLGEKKAILSLALSTMVITAVGVFIPV AVLIVAPIALSVGKSTGISKLSLLIALSGGGKAGNIISPNPNTIAAANGFNLPLSDVMIA GFIPAVFGLITAVVLANIMRSKGSMVKETDLVEEQTKELLPLKKALIAPVLAIVLLLLNP IGAVLNISFIKSLNIDALYILPFASVVGTIAIGQTKQLAFYASSGLKRVTDTVLILIGAG AIAGLISVSDLSTQIVHLISVMGISGTFLAPISGILMGLAVGSTSTAVILATGSFGPAIL DMGTSSLSAAVMVHTGATVIDSVPQGNYFHITAQSMNMTIKERIRVIPYEMCVGGVMTIV ATILYGFILN >gi|307679309|gb|GL456418.1| GENE 131 129633 - 130781 1463 382 aa, chain + ## HITS:1 COG:L79277 KEGG:ns NR:ns ## COG: L79277 COG1929 # Protein_GI_number: 15672838 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerate kinase # Organism: Lactococcus lactis # 1 378 1 378 385 428 62.0 1e-120 MTKKFVLAPDSFKESMSAKEACLAMEKGILAVFKDADIQHVPMADGGEGTVDSLVDATGG TRVPVRVAGPLPDQIVETYYGLLGDQETVVIEMAKANGIELVKAAERNPLITSTYGTGEM IQHALNHGAKKIIIGIGGSVTNDGGAGMIQALGARLLDKEGQELTRGGGALDKLAQIDLT QFDQRIFATEVLVASDVNNPLTGPTGASHVFGPQKGATEEMVAQLDKNLAHYAAIIKKEI GIDVEMMPGAGAAGGLGGGVLAFTKAQLRPGIDIVVEVNQLEEKIKAADYVFTGEGGMDF QTKFGKAPYGVSRLAKKYQKPVFACAGYIGKDVDVLYEEGMTAIFGILAKAEPLEAALKN GPVNLERTVENIARTLQLVPCD >gi|307679309|gb|GL456418.1| GENE 132 130923 - 131936 893 337 aa, chain + ## HITS:1 COG:CAC2833 KEGG:ns NR:ns ## COG: CAC2833 COG3835 # Protein_GI_number: 15896088 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Sugar diacid utilization regulator # Organism: Clostridium acetobutylicum # 2 327 1 337 344 137 31.0 4e-32 MLKLDKIQANKIVEKLMADIPYNINIMDERGKIIASGDSARIGERHRGAERAINERKNIE IYKDTSLEKKGTNEPIILNDHILGVVGISGEPDEVRKFTKLVRSIVLLLTEELNTQQERE KKKKQKNQFIQHLMHVDSAYSEALKLEALELYNLQLDDQNHCVLTKDKRLLSSYYPGHEI FEWENCYLVITSEPPQITKPVTEYLVISSEKATIQQMVQEAQNTYLLLSFLQLEKAKFYQ AEDFFIQGIFNFPFHIELDFFETIQTIYDEYYETVIFFANHNLNINETSQVLHIHRNTLN YRLKRIHELTGMDPKVWQDFWKLFYYFAYCFKERFEK >gi|307679309|gb|GL456418.1| GENE 133 132059 - 132961 1100 300 aa, chain + ## HITS:1 COG:lin0768 KEGG:ns NR:ns ## COG: lin0768 COG1597 # Protein_GI_number: 16799842 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Listeria innocua # 1 300 1 299 309 270 47.0 2e-72 MKKAVLIVNPSSGGEKAKEFETLAEEKLKQLFDEVVVKQTEKGGDAEQFAREAAESHFDS VFVMGGDGTVNEGISGLAEQAYRPKFGFFPLGTVNDLARALNLPMDPEEAIQQLDLEKTS ALDVGKINDDYFMNVVAIGTIPESINDVDVEQKTKLGKLAYFISGAKHLANAQTYPFHLR LDQKEQTIESSTVLVGLTNSIGGFETLLPEAQVDDGKLHLVYLKDQSLWDAVKAVPDLLK GVDQSTDNLVYLTFKEGTISLENQEELTTNVDGDEGAALPITLEILPKHLTVYCGEEQTK >gi|307679309|gb|GL456418.1| GENE 134 133105 - 133815 741 236 aa, chain + ## HITS:1 COG:L62955 KEGG:ns NR:ns ## COG: L62955 COG3597 # Protein_GI_number: 15672246 # Func_class: S Function unknown # Function: Uncharacterized protein/domain associated with GTPases # Organism: Lactococcus lactis # 32 236 12 216 217 238 58.0 5e-63 MRRKKHKNKKKQELFEEIEKQELAEQETKQLNEEIEDPEFRSFFQDVLKKFPQKTSTAIM NAFATSKGKAEQLVTNSQTQLDKVFDEFLAGVSPDVKKKSHQTIHFAALSAAIIGFSPIP FSDAFLLVPVQLTMMSRLHKIFGQSWSESLGKSLTKELVVVSLGKSAVGNILKVIPVVGT VTGGMVNASVAVAITEALGWVTVKMLNDGVDIFDDVMSFKGQFSTLFKAIQNAKKK >gi|307679309|gb|GL456418.1| GENE 135 134099 - 135808 2012 569 aa, chain - ## HITS:1 COG:SPy0184_1 KEGG:ns NR:ns ## COG: SPy0184_1 COG4176 # Protein_GI_number: 15674389 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 5 305 8 306 306 368 64.0 1e-101 MNKYQLPVASWVESFTDWLTSTFAGLFSFLQTIGQSVMDNITALLTAVPPLVLIVLLTIA AFFISNKKIGLSLFTFIGLMFIYNQNLWNDLMSTVTLVLLSSVISIIIGVPLGILMAKSE KAKSIITPILDFMQTMPGFVYLIPAVAFFGIGMVPGVFASVIFALPPTVRFTNLGIRQVP NELVEAADSYGSTGWQKLFKLELPLAKNTIMAGVNQTTMLALSMVVIASMIGAPGLGRGV LSALQRAQVGNGFVNGVALVILAIIIDRFTQHLNNKKAAPKAAGATSKKKKYGIIAAVVV IVAGLVGASIFTTTNDKQISLSYVEWDTEVASTHVVAEVLKDMGYDVKTTPLDNAIMWES VAKGETDAMVGAWLPGTHAEQYKQYKDKLDDLGENLKGAKLGIVVPSYMDVDSIEDLSDQ AGKKITGIEPGAGVVAAAEKTKEAYPNLKDWSIETSSSGAMTVALGQAIKNNEDIVITGW SPHWMFAKYDLKYLADPKGTMGGEEAIHTMARQGLKEDQPEAYKVLDNFHWTTKDMESVM LEINEGKDPQEAARDWVDSHKDQVAEWKK >gi|307679309|gb|GL456418.1| GENE 136 135801 - 136991 1455 396 aa, chain - ## HITS:1 COG:L74195 KEGG:ns NR:ns ## COG: L74195 COG4175 # Protein_GI_number: 15673434 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport system, ATPase component # Organism: Lactococcus lactis # 1 389 1 391 408 550 74.0 1e-156 MPKVKVNHLTKIFGKKTKPALEMIRANKSKTEILEKTGATVGVYDVNFEVEEGEIFVIMG LSGSGKSTLIRLLNRLIEPTSGNIYIDGQDISSLDKEGLREVRRNKMSMVFQNFGLFPHR TILENTEYGLEIRGVPKEERQAKAEKALENSSLIAFKDQLPSQLSGGMQQRVGLARALAN DPEILLMDEAFSALDPLIRREMQDELLDLQENVKKTIIFITHDLNEALRIGDRIALMKDG QIMQIGTGEEILTNPANEYVRTFVEDVDRSKVLTAQNIMVPALTTNIEIDGPTVALKRMR QEEVSMLLAVDKKRQLKGVVRAEKALEARKNGTSLVECVDPEIQTIDKDMLVNDIFPLIY DAQTPLAVTDNGKLLGVVIRGSVLEALAETEVNEHE >gi|307679309|gb|GL456418.1| GENE 137 137191 - 137823 593 210 aa, chain - ## HITS:1 COG:L75633_2 KEGG:ns NR:ns ## COG: L75633_2 COG0490 # Protein_GI_number: 15673435 # Func_class: P Inorganic ion transport and metabolism # Function: Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels # Organism: Lactococcus lactis # 105 209 1 104 106 107 51.0 1e-23 MASKKISLTKPKYQQIAVDVAEKIAEGKLHVGDKIHARSTLANQYQVSSETARKAIIVLV DLEIVKAKHGSGFYVASKEKAQDFVTQYQDVQTIAEIKEELLDSVAKQKEELTHFSSILD TLVEQTKRFDSFNPMNPYSLVLTEEAAYLEATISEMNFWQNTSATIIAIKHKEELLVSPG PYAKISLNDTLYFVGHDESTLQRVQNFFYP >gi|307679309|gb|GL456418.1| GENE 138 137838 - 139784 2095 648 aa, chain - ## HITS:1 COG:lin2179 KEGG:ns NR:ns ## COG: lin2179 COG0488 # Protein_GI_number: 16801244 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Listeria innocua # 1 644 1 650 650 667 57.0 0 MILLQANQVARHFGSETLFENIHLEIATKSRIALVGRNGAGKSTFLKIIAGIDAPDSGTI AKNKTATLGYLAQNTGLESDKTVWEEMTKAFADILEMEQRMRELETKISEMEPTTSVYEG ILKEYDQLQHTFSEKNGYGYENEIRSVLHGFGFDESFYTKDIQTLSGGQKTRLALARMLL QKPDILILDEPTNHLDIETLSWLESYLPSYAGALLIVSHDRYFLDKVVNEVYELSRKKMT HYKGNYSKYLELKAEQLASEWKAYEKQQEEINKLEDFVAKNLVRASTTKRAQSRRKVLEK MDRLDRPQGDEKSAHFLFDSEKVSGNVVLQVEDAAIGYDPEHILSEPIHLDIRRKEAIAL VGPNGIGKSTLLKSIIDRIPFIKGSKTFGTNVSVGYYDQEQANLHGNKTVLAELWDEHPT TPEKEIRSILGGFLFSGDDVEKTIPLLSGGEKARVALAKLAMDRDNFLILDEPTNHLDID NKEVLENALIDYEGTILFVSHDRYFINRIATKVVELSEKGSKLYLGDYDYYLEKKQEEEE ITALLANEEAAKKPEPVTAKNTFYQNKEQQKLLRTLQRKITQVEENLAQLDTTIAQLEAQ MSQPDILENHVELLALNQQLDDARQQQDELLEQWENFSLELEEMENNN >gi|307679309|gb|GL456418.1| GENE 139 139998 - 140648 858 216 aa, chain + ## HITS:1 COG:lin2178 KEGG:ns NR:ns ## COG: lin2178 COG2344 # Protein_GI_number: 16801243 # Func_class: R General function prediction only # Function: AT-rich DNA-binding protein # Organism: Listeria innocua # 6 207 8 209 215 246 60.0 2e-65 MKDQVIPKATARRLPLYYRYLRMLHDTGKNKVSSTELSEAVQVDSATIRRDFSYFGELGK RGYGYDVENLMNFFAKTLNEDELTNVALIGVGNLGSALLKYKFHQSNSIRVSCAFDVNED IVGRIVDGIPVYPMEDMMEQIRVQQIEVAILTIPARKAQEVVNKLAEAGVKGILNFTAAR LVAPPEVLIQNVDLTNELQTLIYFLHHDNELIDEEE >gi|307679309|gb|GL456418.1| GENE 140 140691 - 141344 633 217 aa, chain - ## HITS:1 COG:BS_ydiL KEGG:ns NR:ns ## COG: BS_ydiL COG1266 # Protein_GI_number: 16077668 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Bacillus subtilis # 3 209 1 221 244 109 38.0 4e-24 MTLRKSSLFILVTYIIAFFGPLLFSGISPNAAINVTTALYIIGALVMIGIFLKTTEPSPL EETATLKSPIFIFLLGVSGIFIAMLIQGVTFAIEVAITGEQATSQNTQAIVAVILANPLF ILATTIGGPIMEEFVFRYAFIHLIQPFTNFWIAATVSSAIFSLAHADGHFFVYFFMGFFF ALLYKQTGKIWTSIIAHCGMNTIVIIVQLLLHNGAIQ >gi|307679309|gb|GL456418.1| GENE 141 141363 - 141539 203 58 aa, chain - ## HITS:1 COG:no KEGG:EF2636 NR:ns ## KEGG: EF2636 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 58 1 58 58 76 100.0 4e-13 MKQRLLTALIATFVYFVIANLGNLVFSVTEGIVSTLWESLFFFLFVFLLLGYRNNRKK >gi|307679309|gb|GL456418.1| GENE 142 141772 - 142056 423 94 aa, chain + ## HITS:1 COG:lin2175 KEGG:ns NR:ns ## COG: lin2175 COG0234 # Protein_GI_number: 16801240 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Co-chaperonin GroES (HSP10) # Organism: Listeria innocua # 1 91 1 91 94 107 68.0 7e-24 MLKPLGDRVVIRVAKEEEKTVGGIVLASVAKEKPQTGEVIAVGEGRVLENGTKVPMEVKI GDTVMFEKYSGTEVKYEGVEYLIVSAKDIIATVE >gi|307679309|gb|GL456418.1| GENE 143 142114 - 143739 1605 541 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 [Haemophilus parasuis 29755] # 2 541 3 547 547 622 59 1e-177 MAKEIKFAEDARAAMLRGVDVLADTVKVTLGPKGRNVVLEKSFGSPLITNDGVTIAKEIE LEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGLKNVTAGANPLGIRRGIE LATKTAVEELHNISSVVDSKEAIAQVAAVSSGSEKVGQLIADAMEKVGNDGVITIEESKG IETELDVVEGMQFDRGYLSQYMVTDNDKMEAVLENPYILITDKKISNIQDILPLLEQILQ QSRPLLIIADDVDGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGTVIT DDLGLELKDTTIENLGNASKVVVDKDNTTIVEGAGSKEAIDARVHLIKNQIGETTSDFDR EKLQERLAKLAGGVAVVKVGAATETELKELKLRIEDALNATRAAVEEGMVSGGGTALVNV IGKVAALEAEGDVATGIKIVVRALEEPIRQIAENAGYEGSVIVDKLKNVDLGIGFNAANG EWVNMVEAGIVDPTKVTRSALQNAASVSALLLTTEAVVADKPEPAAPAPMMDPSMGMGGM M >gi|307679309|gb|GL456418.1| GENE 144 144042 - 144761 711 239 aa, chain + ## HITS:1 COG:SA0017 KEGG:ns NR:ns ## COG: SA0017 COG0745 # Protein_GI_number: 15925723 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Staphylococcus aureus N315 # 63 237 65 231 235 77 32.0 3e-14 MEKYTIGVVPLTIETKEYCQNWFVSNQVECQIIQGTNILLHLHHIDGLVIEVTDHQQVNT CCELLMTIRKQSDLPIWLFSRTEVISKVNRIIYLQLGADGVFDHSYDRQECMLSMSNLLQ RVKRRFYPKLAIANEEQTVTKNLSERLYLIAPNLSVYLGSGEEILLTKLEFFTIEYLYKH AGQTITYEELYKNVWKDTANERKYRVANVIFHLRKKIEQDVNKPQYIKTIRSKGYMLTV >gi|307679309|gb|GL456418.1| GENE 145 144785 - 145420 800 211 aa, chain + ## HITS:1 COG:no KEGG:EF2629 NR:ns ## KEGG: EF2629 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 211 1 211 236 209 95.0 5e-53 MWQFLTKNNEDEEYEKMPDFENEQSMKAQPTVTEEAIFDDEFVYAKEQSAKVKQVQQQVP TELSEESFSFAEKLEEENQLYQQSIKKLTDQLLMQTNEVEALRKQVVEKDVQLEQLKETL TDKETTITSLQKQLSEAKIQQRQTSEENLDTAVTLSQKEIGEVLLEAKRQAKETISQANQ QVATVHEEMEQRLATLTRMKQVAREYQAYCE >gi|307679309|gb|GL456418.1| GENE 146 145512 - 146318 681 268 aa, chain + ## HITS:1 COG:SPy0857 KEGG:ns NR:ns ## COG: SPy0857 COG1705 # Protein_GI_number: 15674890 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Streptococcus pyogenes M1 GAS # 186 256 42 112 235 84 61.0 1e-16 MKKRKARYLKLVCLGVLGTYAGASYYNSEPLIAQEETETSHENRQLVLEEKRADQVNQDQ GTLTSSTLNETVISSSEQQESSIQDDSSDHQENNVEPSESENSLPPQEKPIASTKPTESL QNEQPVSEERKALTEKSPHNQEPQNSTLTEKTKEPLVHSEIDNSQEKEKQAGIQQQAEAN FVVQENASTSEFIRKIGEEARVIGQQHDLYASVMIAQAILESGSGNSALAAPPNYNLFGI KGAYQGQSVSFPTQEDIRRREEEKFIHG >gi|307679309|gb|GL456418.1| GENE 147 146460 - 146870 256 136 aa, chain + ## HITS:1 COG:lin2694 KEGG:ns NR:ns ## COG: lin2694 COG2246 # Protein_GI_number: 16801755 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 11 135 21 145 145 100 46.0 9e-22 MKELFRKYREVLAYLFFGGATTVVNLVVFFVCQNVLGLDYKISNTISWFLSVLFAFFTNK YWVFASKHESIAGFFKEMGLFYWYRILSFVADMGLMILLIDGIHFSSFWAKMITQVVVVI LNYFFSKFFIFKEKEV >gi|307679309|gb|GL456418.1| GENE 148 146948 - 148432 1589 494 aa, chain + ## HITS:1 COG:L107468 KEGG:ns NR:ns ## COG: L107468 COG1488 # Protein_GI_number: 15673082 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid phosphoribosyltransferase # Organism: Lactococcus lactis # 1 483 6 487 495 771 76.0 0 MDYTYADDSLTLHTDMYQINMMQTYWELGRADLHAVFECYFREMPFNHGYAIFAGLERLV NYLENLTFTESDIAYLREVEEYPEDFLTYLANFEFKCTVRSALEGDLVFNNEPLIQIEGP LAQCQLVETALLNMVNFQTLIATKAARIKSVIGDDPLLEFGTRRAQELDAAIWGTRAAYI GGADATSNVRAGKIFGIPVSGTHAHSLVQSYGNDYEAFMAYAKTHRDCVFLVDTYDTLKA GVPSAIRVAREMGDKINFLGVRIDSGDMAYISKRVREQLDEAGFTEAKIYASNDLDENTI LNLKMQKSKIDVWGVGTKLITAYDQPALGAVFKLVSIEGEDGQMKDTIKLSSNAEKVTTP GKKQVWRITRKSDKKSEGDYVTLWNEDPRQEEEIYMFHPVHTFINKYVRDFEARPVLQDI FVEGKRVYELPTLDEIKQYAKENLDSLWEEYKRDLNPQKYPVDLSTDCWNHKMNLLEKVR KDVKHLTETVNKEA >gi|307679309|gb|GL456418.1| GENE 149 148435 - 149262 1131 275 aa, chain + ## HITS:1 COG:SP1420 KEGG:ns NR:ns ## COG: SP1420 COG0171 # Protein_GI_number: 15901273 # Func_class: H Coenzyme transport and metabolism # Function: NAD synthase # Organism: Streptococcus pneumoniae TIGR4 # 3 275 2 274 274 416 76.0 1e-116 MTTLQEKIIQELGVLPTIDPKEEVRKSIDFLKAYLTKHPFLKTFVLGISGGQDSTLAGRL AQLAMTEMREETGDMSYQFIAIRLPYGEQADEADAQAALAFIQPDVSLRVDIKPAVDAMV GSLENAGVQISDFNKGNMKARQRMITQYAVAGENAGAVIGTDHAAENVTAFFTKYGDGGA DILPLFRLNKRQGKALLKELGAPEALYLKIPTADLEDDKPLVADEVALGVTYDAIDDYLE GKKVSETDQQTIENWYKKGQHKRHLPITIFDDFWK >gi|307679309|gb|GL456418.1| GENE 150 149455 - 151260 1955 601 aa, chain + ## HITS:1 COG:L96595 KEGG:ns NR:ns ## COG: L96595 COG2217 # Protein_GI_number: 15672077 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 1 598 1 592 593 554 51.0 1e-157 MKHVTKLGITIITGVLALLFEFILHQPNWAYGIILITGSVMALMMFWEMIQTLREGKYGV DILAITAIVATLAVGEYWASLMILIMLTGGDSLEDYAAGKANQELKSLLDNSPQKAHRLN GENLEDVSVEEINVGDELVVKPGELVPVDGLVKTGTSTVDESSLTGESKPIEKNPGDELM SGSVNGDGSLKMVAEKTVADSQYQTIVNLVKESAARPAHFVRLADRYAVPFTLVAYLIAG VAWFVSKSPTRFAEVLVVASPCPLILSAPIALVAGMGRSSRHGVVIKSGTMVEKLASAKT IAFDKTGTITQGQLSVDQVQPINAGITAAELVGLAASVEQESSHILARSIVAYARKQDVP LKNITDLAEVSGAGVKAFVDGAEIRVGKKNFVTQESQATEKIDKTTIHISRNGTYLGRIT FTDTVRPEAKETMEKLHQLHLQRILMLTGDQESVAETIAAEVGITEVHGECLPQDKLTIL KELPKENHPVIMVGDGVNDAPSLAVADVGIAMGAHGATAASETADVVILKDDLSKVSQAV EIAQDTMKIAKQSVLIGIFICVLLMLIASTGIIPALIGAMLQEVVDTVSILSALRARRIG K >gi|307679309|gb|GL456418.1| GENE 151 151352 - 151636 385 94 aa, chain + ## HITS:1 COG:L86826 KEGG:ns NR:ns ## COG: L86826 COG3592 # Protein_GI_number: 15672668 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 90 15 104 104 112 60.0 1e-25 MKGNQIDGQPVTEEQLLKEGYRKYTGKGIDIFYNKDICEHIGNCVRGNPEVFEVGRKPWI IPDNESVENDMIVVDSCPSGALKYIRKAGNEYAN >gi|307679309|gb|GL456418.1| GENE 152 151626 - 151901 386 91 aa, chain + ## HITS:1 COG:lin0181 KEGG:ns NR:ns ## COG: lin0181 COG2388 # Protein_GI_number: 16799258 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Listeria innocua # 1 88 1 88 92 91 55.0 3e-19 MQIKEENNRFALYNDENQEIGEMTWSDAGESMMIIDHTFVDPSYRGQKLAEKLVLAGVEK ARKEHKKIIPLCPFAKKEFDTKPEYGDVLRK >gi|307679309|gb|GL456418.1| GENE 153 152069 - 152305 369 78 aa, chain + ## HITS:1 COG:L0338 KEGG:ns NR:ns ## COG: L0338 COG1314 # Protein_GI_number: 15672923 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecG # Organism: Lactococcus lactis # 1 78 5 82 82 72 46.0 2e-13 MYNLILTLVIILSVLIVITVMMQPSKQNSAASAFTGGADKLFGKQKARGFEAVMQRSTAV LGAIWMILLFVLAFLSSK >gi|307679309|gb|GL456418.1| GENE 154 152460 - 153224 797 254 aa, chain + ## HITS:1 COG:BH3554 KEGG:ns NR:ns ## COG: BH3554 COG1647 # Protein_GI_number: 15616116 # Func_class: R General function prediction only # Function: Esterase/lipase # Organism: Bacillus halodurans # 4 252 2 248 248 164 34.0 1e-40 MAKKINLPKPLFSEKGKRAVLLLHAYSGSSNDVRMLSRRLEKENYTVYSPNFSGHGTLVP EDILDQTTEQWWQDTQEAVAFLRERGYQEIAIFGLSMGGIFSMHALTEQLTGLIGGGFFC SPIYPVENKVPENFVLYAENVMKIAEVPAEEQQSRLQSIEQRVKQQLGAIETIASQTADK LNKIHAPLFLAQAGKDEMIEPMGVYQTAQALTQARVTLQWYPNSGHVITVSGEHKQLEQD VVQFLATLPWNEEK >gi|307679309|gb|GL456418.1| GENE 155 153224 - 155593 1620 789 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 [Clostridium acetobutylicum ATCC 824] # 6 746 3 726 730 628 44 1e-179 MTKQTIKEQILHFMESQKKKSFSMEEIAQGLNLEKSSDFKILVQTIAQMEREKSVSFNKK GKVLLPMKDLLIEGTFRANERGFGFVTIDPEEPDVYIPKEATNFAMDGDTVLIDVIQHAD PFSDRGAEGKVKEIKERAVSQVVGEFVAYSEEEMAEMGLYGYMIPKDKKLNQYTVSIAPE GIKPVDGSIVIAEITYYPDQEYPTSMEGLVKQVIGHKNDPGMDILSIVVAHGIPTAFPDE VLAEADQVPETIAESDLVGRRDLRDQLIVTIDGEDAKDLDDAVTVQKLANGNFFLGVHIA DVSYYVTEGSQLDMEAYERGTSVYLTDRVVPMIPQRLSNGICSLNPHVPRLTMSCEMEIT PEGEVISHEIFQSVIQTTERMTYTAVNEILEEQKPETLERYKELVPMFKEMGELHHILEE MRMRRGAISFEDREAKVLVDENGHPQDILLRTRGVGERLIESFMLAANETVARHYHDLKL PFIYRIHEQPKEEKMQRFFDFAAVLGILVKGTKENISPKDLQKVLEQVENKPEEVVINTM LLRSMQQAKYSEDNYGHYGLAAEYYTHFTSPIRRYPDLIVHRLIRSYSQDQSEKNQEKWN EALPEIANHSSSMERRAVDAEREVDAMKKAEFMVDKVGETYDGIISSVTKFGIFVELPNT IEGLIHVNNLKQDYFHFIENHMALVGERTGMTLKIGQKVQIRVEKADPETREVDFELISA EEVAPVEGLKGRKKGKANSSTRSNNQRRNKKDESFDGKKKKNKKKGKGKKQPFYKEAMKQ KNKKGKKKK >gi|307679309|gb|GL456418.1| GENE 156 155606 - 156070 637 154 aa, chain + ## HITS:1 COG:lin2542 KEGG:ns NR:ns ## COG: lin2542 COG0691 # Protein_GI_number: 16801604 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: tmRNA-binding protein # Organism: Listeria innocua # 1 154 1 154 154 209 72.0 2e-54 MPKGEGKLIAQNRKARHDYSIIDTVEAGLVLQGTEIKSIRNGRINLKDGFARIRNGEAFL YNVHISPYEQGNIFNHDPLRTRKLLLHKKQINKLIGETKNTGITLVPLKVYIKDGYAKVL IGLAKGKKQYDKREDLKRKEVARQISRTLKNNRR >gi|307679309|gb|GL456418.1| GENE 157 156373 - 157092 653 239 aa, chain + ## HITS:1 COG:lin2679 KEGG:ns NR:ns ## COG: lin2679 COG0356 # Protein_GI_number: 16801740 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit a # Organism: Listeria innocua # 1 238 1 237 238 225 52.0 6e-59 MEEKKLLFNIGPIWFDGTIVLMVLLTCIIVFAFVYACTRNMKLRPKGKQTVIEWLVDFIR GIITDNLPRKEVSNFHLMAFTLFMFVLVSNILGLVTKIVVGDDLSVWKSPTADPIVTLTL AMMMIVLTHFFGMKRFGFKGYLVNSYLRPVGFLLPVKLMEEFTNLLTLGLRLYGNIFAGE VLLGLIAGTVASVGLWVIPLAIPLEMIWVAFSIFIGCIQAFIFVTLSMVYMSHKIETEE >gi|307679309|gb|GL456418.1| GENE 158 157141 - 157362 428 73 aa, chain + ## HITS:1 COG:SA1910 KEGG:ns NR:ns ## COG: SA1910 COG0636 # Protein_GI_number: 15927682 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K # Organism: Staphylococcus aureus N315 # 4 69 1 66 70 60 59.0 1e-09 MEGLNFIAAAIAIFGSAIGAAIGNGQVISKTIESMTRQPEMSGQLRTTMFIGVALIEAVP ILGVVVSLLLLFR >gi|307679309|gb|GL456418.1| GENE 159 157500 - 158030 740 176 aa, chain + ## HITS:1 COG:L11208 KEGG:ns NR:ns ## COG: L11208 COG0711 # Protein_GI_number: 15673750 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit b # Organism: Lactococcus lactis # 10 171 7 168 168 122 46.0 2e-28 MLLTTLVVGETAPSTTLGTMIVVSGAFLILMLLLKKYAWGAIVDILTQREEKIANDLDSA EQSRVAAAKMEKERQQQLLSSRSEAAEIIKNAKESGEQTRQKTLKETTAEVTRLREKART DISQEREEALSSVKNEVADLSLQIAAKILNKELTPDAHEALIDSYIESLGKANETR >gi|307679309|gb|GL456418.1| GENE 160 158017 - 158559 706 180 aa, chain + ## HITS:1 COG:BH3757 KEGG:ns NR:ns ## COG: BH3757 COG0712 # Protein_GI_number: 15616319 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) # Organism: Bacillus halodurans # 3 179 1 178 183 77 28.0 9e-15 MKLDKYTVGKRYGKALFELAVEKNQAEAIYQELLTLREVYHQVPGIGDILSDDRLEPYEK DSIMEKLVTGFSEMMQNFLRVVYEYRRMYDLLLMIDEYERRYDEHQGLILGSVTTAIPLS KEQHQAMEEKAAQLLGYEQAHLVNLIDPSIVGGVVIEANHQVIDGSIRKQLEHMQQKLLK >gi|307679309|gb|GL456418.1| GENE 161 158588 - 160144 2250 518 aa, chain + ## HITS:1 COG:SPy0758 KEGG:ns NR:ns ## COG: SPy0758 COG0056 # Protein_GI_number: 15674806 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, alpha subunit # Organism: Streptococcus pyogenes M1 GAS # 1 496 1 496 502 808 82.0 0 MAIKAEEISALIKEQIENYQQQLAVEEVGTVTYVGDGIARAHGLENAMSGELVEFSNGSY GMAQNLETNDVGIIILGDFETIREGDKVQRTGKIMEVPVGEALIGRVVNPLGQPLDGLGE IKTDKTRPVEATAPGVMQRQSVAEPMQTGLKAIDALVPIGRGQRELVIGDRKTGKTSIAI DTIINQKGQDVICIYVAIGQKESTVRNQVETLRKFGALDYTIVVTAGASQPAPLLYIAPY AGTAMGEEFMYNGKHVLIIFDDLSKQAVAYRELSLLLRRPPGREAYPGDVFYLHSRLLER AAKLSDELGGGSMTALPFVETQAGDISAYIPTNVISITDGQIFLESDLFYAGTRPAVDAG LSVSRVGGSAQIKAMKKVAGTLRLDLASYRELEAFTQFGSDLDAATQAKLNRGRRTVEIL KQKLHAPLPVEKQVLILYALTHGFLDSVSVDKILHFEQDLFDYFDGKHADLLETIRTTKD LPDTDALDAAITEFSEMFAAANNSGDSAKEALEKIDNA >gi|307679309|gb|GL456418.1| GENE 162 160160 - 161068 1074 302 aa, chain + ## HITS:1 COG:SP1509 KEGG:ns NR:ns ## COG: SP1509 COG0224 # Protein_GI_number: 15901356 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, gamma subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 302 1 292 292 353 64.0 3e-97 MGASLNEIKQRIASTKKTSQITKAMQMVSAAKLTKSEGASKSFQEYSSKIRSVVTHLVAA QLSELRETEQSSLSEGNYHVMLAQRPVKKTGYIVITSDKGLVGGYNSSILKQTMSMIQED HDSNKEYALIAIGGTGADFFKARGIDVSYELRGLTDQPTFEEVRKIVTTATTMYQNEVFD ELYVCYNHHVNSLTSQFRVEKMLPITDLDPSEATSYEQEYLLEPSPEAILDQLLPQYAES LIYGAIIDAKTAEHAAGMTAMKTATDNAQNIISDLTISYNRARQGAITQEITEIVAGAAA LE >gi|307679309|gb|GL456418.1| GENE 163 161142 - 162548 1925 468 aa, chain + ## HITS:1 COG:SP1508 KEGG:ns NR:ns ## COG: SP1508 COG0055 # Protein_GI_number: 15901355 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, beta subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 468 1 468 468 796 87.0 0 MSSGKIVQVIGPVVDVEFSLDQSLPDINNALVVYKNGEAKQKVVLEVALELGDGVIRSIA MESTDGLQRGMEVIDTGKSISVPVGKDTLGRVFNVLGDTIDLEAPFPADAERSGIHKKAP AFDELSTSNEILETGIKVIDLLAPYLKGGKVGLFGGAGVGKTVLIQELIHNIAQEHGGIS VFTGVGERTREGNDLYYEMKDSGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVE GQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSITSI QAIYVPADDYTDPAPATAFAHLDATTNLERKLTEQGIYPAVDPLASSSSALAPEIVGEEH YEVATEVQHILQRYRELQDIIAILGMDELSDDEKVLVGRARRVQFFLSQNFNVAEQFTGQ PGSYVPVAETVRGFKEILEGKHDNLPEEAFRSVGKIEDAIEKAKQLNY >gi|307679309|gb|GL456418.1| GENE 164 162565 - 162984 629 139 aa, chain + ## HITS:1 COG:SPy0761 KEGG:ns NR:ns ## COG: SPy0761 COG0355 # Protein_GI_number: 15674809 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) # Organism: Streptococcus pyogenes M1 GAS # 1 137 1 137 138 149 60.0 1e-36 MDSLTVNVVTPNGLVYDHHAKIVVAKTTDGEIGILPKHAPIIVPLAIDEVRIKRTDSDTH VDWVAVNGGIMEVRDNVVSIIADSAERERDIDVPRAERAKQRAERLIEEAKAKDDRDQLR RATVALHRAINRINVSKHG >gi|307679309|gb|GL456418.1| GENE 165 163173 - 163409 123 78 aa, chain + ## HITS:1 COG:no KEGG:EF2606 NR:ns ## KEGG: EF2606 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 78 1 78 78 112 100.0 6e-24 MQYYGVDAIVRIVSHLMFIYISFWALQSLRIEQFFKTQFTPQIRMLMVFFAIAIGYTVSS FALELIALCRNLFIVYFP >gi|307679309|gb|GL456418.1| GENE 166 163359 - 163493 65 44 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|307285548|ref|ZP_07565687.1| ## NR: gi|307285548|ref|ZP_07565687.1| hypothetical protein HMPREF9515_02931 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9515_02931 [Enterococcus faecalis TX0860] # 1 44 1 44 44 63 100.0 5e-09 MRIGIPIQNLYYYTIIQLKIVPFFIFQFLRKIHNEKISTKRNQF >gi|307679309|gb|GL456418.1| GENE 167 163512 - 164813 1757 433 aa, chain + ## HITS:1 COG:lin2670 KEGG:ns NR:ns ## COG: lin2670 COG0766 # Protein_GI_number: 16801731 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Listeria innocua # 1 425 1 422 430 526 70.0 1e-149 MEQIIVHGGNTKLEGTVKIEGAKNAVLPILAATLLAEEGVTTLKNVPILSDVFTMNQVIK HLNVAIDFDEDANEVTIDATQPLGIEANYEYVSKMRASIVVMGPLLARNGHAKVAMPGGC AIGKRPIDLHLKGFQALGAKIIQKNGYIEAIADELIGNTIYLDFPSVGATQNIMMAAVRA KGTTIIENVAREPEIVDLANILNKMGANVIGAGTETMRIEGVDKLHAVEHSIVQDRIEAG TFMVAAAMTEGNVLIEEAISEHNRPLISKLTEMGAIIEEEENGIRVIGPKHLKPTDVKTM PHPGFPTDMQAQMTAIQMFAEGTSIVTETVFENRYQHLEEMRRMNADLKIDGNIAVINGG NELQGAAVEATDLRAAAALILVGLRANGITRVSNLKYLDRGYYEFHKKLQKLGANVERVN DEKIEEKQATTVI >gi|307679309|gb|GL456418.1| GENE 168 164827 - 165003 267 58 aa, chain + ## HITS:1 COG:no KEGG:EF2604 NR:ns ## KEGG: EF2604 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 58 1 58 58 82 100.0 6e-15 MSSFRYILVTLLKILVVISLVIILFVVGTMIGYGLIGNGNPMDVFDEKIWTHIMNFFK >gi|307679309|gb|GL456418.1| GENE 169 165131 - 165499 451 122 aa, chain + ## HITS:1 COG:lin0546 KEGG:ns NR:ns ## COG: lin0546 COG3731 # Protein_GI_number: 16799621 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIA # Organism: Listeria innocua # 15 117 17 116 116 73 35.0 1e-13 MQATVTEIGKHAIDDSEKMIILFGETATDTLKQHAVIQSFPEKDQVTLAEGDHLKIGDTN YTITKVGSFANSNLQSIAHSTLIFADAPTDEDDVIRNGVYLTPHQLPKITIGTTIDYLVN GA >gi|307679309|gb|GL456418.1| GENE 170 165504 - 166673 1417 389 aa, chain + ## HITS:1 COG:SP1505 KEGG:ns NR:ns ## COG: SP1505 COG0628 # Protein_GI_number: 15901352 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Streptococcus pneumoniae TIGR4 # 11 379 10 378 388 351 51.0 2e-96 MDKKQTTDKRLSWFWRWFLNNQVVTALLIVLLVLLIILTFTKVSYLFKPVWQFFGVVGLP VIMAGILYYLLNPIVDYLEKKQISRVWSIIGLFILIVALLIWGGIVIVPKIREQSVSFVN HFPQYIDTIDQKSQEILSDPLFAQFREQLEAAGDKVVSSLGTIIKNVSTFTVQGIGNFFG AVATIFVAIITMPFILFYLLKDGKNLAPYLIKFLPVKMRKPTLKVLAEVNDQVSSYIRGQ LTVAFAVAIMFMIGFSVIGLDYAVTLGIAAGFLNLIPYLGSFLAMIPAVFLGIVSGPALL IKVLIVFAIEQTVEGRFISPLVLGSQLSIHPVTILVVLLTSGKLFGIVGVILGIPVYAAA KVIITHIFEWYQIVSGLYDEDKPDQQEST >gi|307679309|gb|GL456418.1| GENE 171 166735 - 167361 900 208 aa, chain - ## HITS:1 COG:L186107 KEGG:ns NR:ns ## COG: L186107 COG1182 # Protein_GI_number: 15672363 # Func_class: I Lipid transport and metabolism # Function: Acyl carrier protein phosphodiesterase # Organism: Lactococcus lactis # 1 208 1 201 201 193 51.0 2e-49 MSKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLS AWGALRAGAAFETLSENQQQKVARFNELTDQFLSADKVVIANPMWNLNVPTRLKAWVDTI NVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGKDFASQYIKAILNFIGVDQVDGLFI EGIDHFPDRAEELLNTAMTKATEYGKTF >gi|307679309|gb|GL456418.1| GENE 172 167663 - 168505 853 280 aa, chain + ## HITS:1 COG:lin2530 KEGG:ns NR:ns ## COG: lin2530 COG3711 # Protein_GI_number: 16801592 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Listeria innocua # 1 274 1 274 285 244 45.0 1e-64 MRIEKVLNNNVVLSRNEQGEEIVYMGRGLAFQKKIGDTINPDYVEKEFVLKDSAMAGQFQ QLFEDVPTKEVEVVKQIVDLAETTLAIELSSNIYLTLTDHIHYALLRAKEGIDIPNPLVF ETRKFYPKEFEIAKQALAIIAEKLGVQFSENEAGFIAFHIVNAEQVNGNMEVTMEATKMV RDILTIISRYFGQVFDEDSLNYQRIVTHLQYFAQRYLKQEAHDEEDEFLFALVQGKYPKA FQAVQRINEYLLKSYDRPIDQAEMIYLTIHIQRVVNDKKA >gi|307679309|gb|GL456418.1| GENE 173 168668 - 170548 2208 626 aa, chain + ## HITS:1 COG:BH0296_2 KEGG:ns NR:ns ## COG: BH0296_2 COG1263 # Protein_GI_number: 15612859 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Bacillus halodurans # 100 455 2 355 368 292 46.0 1e-78 MSKNQEIAARVLKAVGGEGNVNSVVHCATRLRFKLKDENKADTAALNADPDVIQVVQSAG QYQVVIGSHVSDVYKDLMANSGLGNDSDNREKESGGNIFNRLIDIISSIFTPFLGAMAGA GVLKGFLTLAVTMGWLADTSGVYLVLFSIADGLFTFLPIMLAFTAAKKFNTNPFLAVALA MALVHPSITALAGKTISFAGLPVIIGPSGYTSSVLPIILAVFAQSYVERFFKKVIPSFLQ IICVPLAVFLIMAPVTFLAIGPIGTVIGDWLGQGYNAIYAFSPIIAGLLMGSLWQVLVMF GMHWGFVPIMMLNLTQGGDTMVPMLLPAVIAQGGAALAVFFLTKNVKLKGLALSSSITTI FGITEPTVYGVTLPLKKPFIAACIGGGIGGAFVAMNHVKNFTFGLVSMLSLPGFIPAETK DTAPMITGAIGAGIAFIIAFVLTFVLRFEDQPNPETETEKTATDKVVAPVKTNQEDKIIL ASPLQGEILPLEKVQDPVFASGALGKGVAIEPTEGKLYAPADGEITTLFPTGHAVGLTTT EGVELLMHIGMDTVELDGKGFELSVKQGDSVKKGDLLVTFDIAAIKEAGYPVVTPIVVTN TNDYLDVLDMNQTDVLHGEDFLAIIK >gi|307679309|gb|GL456418.1| GENE 174 170573 - 172018 1737 481 aa, chain + ## HITS:1 COG:L89194 KEGG:ns NR:ns ## COG: L89194 COG2723 # Protein_GI_number: 15673441 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Lactococcus lactis # 7 480 3 478 478 677 70.0 0 MTTTTKFPKGFLWGGATAANQLEGAYLADGKGLSVADAMPGGKQRFAILGDEAFDWTIDE TKYRYPNHTGIDHYDRFKEDIALFAKMGFKCYRFSIAWSRIFPQGDETQPNEAGLKFYDA VIDECLSYNIEPVITISHYEMPLHLAKEYGGWKNRQLVDFYERFAETVLTRYHQKVNYWM TFNEINSAFHFPALSQGLVKSNGANDYQNIFQAWHNQFVASSKAVKIGHELNPELQIGCM IIYATTYGIDSNPVNQVATMIENQEFNYYCTDVQVRGEYPAYAERMYQKYAVKDLVIEEG DLELLKEYPVDYIGFSYYMSTAVDVTGTTNDTADGNLLGGVKNPFLEASEWGWQIDPEGL RIALNELYNRYQKPLFIVENGLGAIDKVDENFYVADDYRIDYLRRHIEAMAEAVADGVDL MGYTPWGCIDLVSASTGEMSKRYGFIYVDLDDEGNGTKNRYEKKSFNWYKQVIETNGQNL D >gi|307679309|gb|GL456418.1| GENE 175 172200 - 172769 711 189 aa, chain + ## HITS:1 COG:SA1052 KEGG:ns NR:ns ## COG: SA1052 COG0194 # Protein_GI_number: 15926792 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Staphylococcus aureus N315 # 9 157 8 162 207 84 36.0 1e-16 MIKQLQHPFFVIMGPSGSGKTAITSKVFPKNYKVISHTTRKKRLDEVDGVDYYFETKASF QALIETNQLVEYDFYHGNYYGVGVAAIVETTKEHPAYNALTFPGFQAVFERFGESVIPVF FDVSKENIYQRLKQRESDPKIIEERLNLYDQEILIKNQLEQYPNYQRIDANGPIKEVAGL LQECIKHYY >gi|307679309|gb|GL456418.1| GENE 176 172917 - 173594 749 225 aa, chain + ## HITS:1 COG:L53789 KEGG:ns NR:ns ## COG: L53789 COG1309 # Protein_GI_number: 15672643 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 123 1 121 189 74 36.0 1e-13 MPTNTFFHLPEEKQQRLLDAAQIEFSRHSLQEASIANIVKLAEIPRGSFYQYFENKEDLY FYYFATLRKNSERDLEKQIIAENGDLIEAMDVYFSKMIVEVLTGENASFYRNLFVNMDYR ASRRVTDNLATGEEEKNRKQNCHKHRGRKGHAAYAEHLYQIIDRSKLTIETPKEFTWFMQ TAMHAVFSTIVDGYRQQRENPAYDSTEAVKQLKMKLNWLKNGAYK >gi|307679309|gb|GL456418.1| GENE 177 173615 - 175342 184 575 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 332 559 2 231 245 75 25 3e-12 MIKLVKRMSLWSVFAAVLFMIVQIIADLYLPTLTSNIINDGVAKGDINYIWSTGVVMLGF SLISIVASIGNTFFATKESQSLGKKLRTDIYRKVENFSNNEFDKFGTASLITRTTNDVNQ IQMVMQMFLRLMINAPLTLIGASFMAYNKDPQLTKIFLYVLPIMAVLVGGIMFLAVPLFK SMQKKTDRLNLVFREGLTGVRVIRAFGKANYEEQRFDEANKDYTQTAIKVNTIVALMIPL MTLIMSGTNIAITWFGGHYIAEMQLEVGNLIAFMTYAMQILMSFMMLSMIFVMVPRAQAS ADRINEVLNTDSEIKDVPNPELLSLKGDKATLAFEHVNYRYQHAENLALEDIDFSAKSGE TVAIIGGTGSGKTTLVNLLPRFYDVESGKILLNGKNIKDTSQHNLREMIGFVPQKAVLFT GTIRENMQYGAPNATDEEIWQALEIAQAKAFVSEFAEGLDSHVEQGGGNFSGGQRQRLAI ARALVKPADVYVFDDSFSALDFKTDANLRKALKEQMTDAIVVLVSQRVSTVMEASTILVL DEGKLVGKGTHEELLANNQTYQEIVHSQLREEDLA >gi|307679309|gb|GL456418.1| GENE 178 175339 - 177207 215 622 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 399 604 40 251 329 87 31 6e-16 MSSRPKGGPMGGGPGRNIGAKGPKPKNFWKTVKRLFRYMSKRMLSIIAVLVLAIAAVVFQ IQTPKVLGQATTEIFKGVMKGAAEMKQGLKITSFPIDFDKIGQILLIVIAMYLISAVFNF LQQVIMTRVSQRTVYELRQELEAKMNKVPISYYDTHSNGDIMSRAINDMDNIASTLQQNL TQLITSIVTFVGVLWMMLTISWQLTLIALATVPLSLIVVMVVAPRSQKHFAAQQKSLGLL NNQVEETYGGHVVVKSFNHEESDQEVFEKENEKLYHAGRKAQFISAIIMPLMNFIKNLGY VFVAVLGGVKVANGMMDLGDVQAFLQYTNQFSQPITQIANLMNTIQATVASAERVFEVLD EEEMVDEPSGIPVETDSPYRVSFEHVVFGYSPEKLLMKDFNLNVKPGEMVAIVGPTGAGK TTLINLLERFYDISSGSIKYDGVDTRDLSREELRAHFSMVLQDTWLFTGSIYDNIHYGNE QASEEEVIRAAKAAHVDDFVRKLPEGYQTILNEEASNISQGQRQLITIARAFLANPDVLI LDEATSSVDTRTEILIQAAMNRLLENRTSFVVAHRLSTIRDADTIIVMAEGSIVETGTHD ELMAKNGFYADLYNSQFSEEVA >gi|307679309|gb|GL456418.1| GENE 179 177411 - 178238 1007 275 aa, chain + ## HITS:1 COG:lin0649 KEGG:ns NR:ns ## COG: lin0649 COG2514 # Protein_GI_number: 16799724 # Func_class: R General function prediction only # Function: Predicted ring-cleavage extradiol dioxygenase # Organism: Listeria innocua # 5 243 3 255 279 72 22.0 7e-13 MTEFQLEKAATLKTIAIRAKKVGEMVDFYKKVMGFVLKSEENNLSIWGTREAGTQLLILE ETRKAEDFHNEEKQMAYFSIKVPTEKEFLQIAQRVLEQDYPIDESFQIGTRQSMFITDLE GNQFEIFHDEATANSTSEKQPIVLKDLISEDLEPHQGLAAGSYLAHVQLKTNNQKEIKAY YEEVLGLKRNEKDQFVLEDGKATIGFQKPETSEVDQLPDPHLGLDFFTIKLSDQEHILAM EQQLTAKNQEFFIDQKKAIVTVFDPIGLEWWFVLK >gi|307679309|gb|GL456418.1| GENE 180 178368 - 179411 935 347 aa, chain + ## HITS:1 COG:L114054 KEGG:ns NR:ns ## COG: L114054 COG1680 # Protein_GI_number: 15674027 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Lactococcus lactis # 9 330 11 308 328 221 41.0 1e-57 MYEKTKWKIQKMMKKGVFSGASFCFIEGEKEESNCWGLAQVKPTKEQLTSAMLFDVASLT KVVGTTTVILQLVEEGKIILDQSLQTYYPSFQDSNITIRHLLTHTADLQGYIPNRDQLNA QELKDAYNHSFHAGKAIGKKVVYTDAGTILLGFMLEEMFQQSMIEILSERVLLPLGMNES TFLPKNPLNCVPTELHEQRGLIRGATHDPKAFVLREHAGNAGLFSNVYDLTKFVRMYLNR GSYHNLQFLKKETIDLLLVNQVPAADKLRSLGWDFKYDVATQRPLLFHTGYTGTFLLIDV RQQSAFIFLSNRVHPEDHRNTYIEERDQLLATYLKEKSSVSDEMTSF >gi|307679309|gb|GL456418.1| GENE 181 179453 - 180424 1228 323 aa, chain + ## HITS:1 COG:L179409 KEGG:ns NR:ns ## COG: L179409 COG1482 # Protein_GI_number: 15672751 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannose isomerase # Organism: Lactococcus lactis # 1 321 1 315 315 408 63.0 1e-114 MQEPLFLQPVFQEKIWGGNRLHTLFGFDLPSDKIGEDWAISAHPHGVSTVLNGEFKGKKL DELWADHQELFGHADGAVFPLLTKILDAEDDLSVQVHPDDAYGQKHEGELGKTECWYIID AEPGAEIIYGHHAKTKEELAEMIEEGRWDDLLRKVPVKKGDFYYVPSGTIHAIGSGILIL ETQQSSDTTYRVYDYDRTDDQGKTRELHIQQSIDVTTVPAKDPDLSIQQENQGQSSIVTY VKTDFFNVYEWRVSGILKVKKQAPYTLATVIEGVGRLITEDAAKADVATFDLKKGDSFIF PTDIPSWRFEGDLTIIASEPGSR >gi|307679309|gb|GL456418.1| GENE 182 180480 - 181025 502 181 aa, chain - ## HITS:1 COG:no KEGG:EF2588 NR:ns ## KEGG: EF2588 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 181 1 181 181 247 98.0 1e-64 MKKITPRIITIIAFSVALNYLGSTVALLLRLPIYLDSVGTIFTGALLGPLFGALTGILTS LLTGLTTDIFSLYYSPVQLCTGILAGLLLHQQLKVTKLPFKTLWLTIPGTVISSLITVCL FGGITSAGSSIIVQFLYGLGLNQLASVLLVQLITDYGDRLLSVIIVTAVIAALPKRSFIT K >gi|307679309|gb|GL456418.1| GENE 183 181028 - 182002 851 324 aa, chain - ## HITS:1 COG:PA0143 KEGG:ns NR:ns ## COG: PA0143 COG1957 # Protein_GI_number: 15595341 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Pseudomonas aeruginosa # 2 299 19 318 329 193 39.0 4e-49 MQKVIVDCDPGIDDTLALLYALASPELDVQAITVVCGNVPVEIGVENVFKCLEKVNRLDI PVYQGAASPLKRPFVSAQDTHGMDGLGETYFPRTSKIQAQALSAADYLAQTFQQATDCSI IALGPLTNIALALKKEPLLGRNLQRFVSMGGTFKSHGNCSPVAEFNYWCDPDAAAWVFEK LGAKIEMVGLDVTREIVFTPTILNYCQRLNPKMGNYLAEITQFYFDFHWKYERILGCVIN DPLAVAYFIDPALCQGFSSYGQIVPDGIAMGQSMIDQYHFQQQPANCHVLTTVDSQQFFV KFLSILLNVQIDEIERDFKNLRMG >gi|307679309|gb|GL456418.1| GENE 184 182239 - 182928 969 229 aa, chain - ## HITS:1 COG:SP1590 KEGG:ns NR:ns ## COG: SP1590 COG3442 # Protein_GI_number: 15901432 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferase # Organism: Streptococcus pneumoniae TIGR4 # 4 224 16 236 260 285 63.0 4e-77 MSKELVVCHLYGNLLNTYGDNGNLLMLKYLTEKMGVTFRSEIISIYEPFDPEKYDLVFVG GGQDFEQLIISEDIQNKKEALTSYIENDGVLLAICGGYQLLGHYYVGAQGEKIKGIGALD HYTLSQDNNRFIGDIEIYNEEFDETYYGFENHNGMTFLGEGERPLGTVKQGKGNNGQDNG EGVVYKNVFGSYFHGPILARNKNLGIRLIRTALEKKYGEPIAIPETLYK >gi|307679309|gb|GL456418.1| GENE 185 182921 - 184273 1649 450 aa, chain - ## HITS:1 COG:L114717 KEGG:ns NR:ns ## COG: L114717 COG0769 # Protein_GI_number: 15673088 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Lactococcus lactis # 1 445 1 445 449 573 62.0 1e-163 MGIRSHLAIAAGKTSQWVLQTFFKGGSSYPGKLALKIDPKILDTLAKDYEIVVVTGTNGK TLTTALTVNILRQEFDEVLTNPTGANMEQGIVSTFLNAKAKKGQKKFAVLEIDEASLSRV TKYIQPKLFVFTNIFRDQMDRYGEIYTTYRLIMEGAAAAPEATILCNGDSPIFNSKETVN PRKYYGFNHLPPKEQLAHYNTDGVLCPKCNHILHYKMITYANLGDYYCPNCGFKRPELDV QLTEMVRMDNTSADFVIDGEEYGIAVGGMYNVYNALAATSVAEYYQVAPDKIRAGLAYDE KVFGRQETIKVGDKECTLVLVKNPVGLNQVIDMMGLAPYSFSLVSLLNANYADGIDVSWI WDGNHEAFADMDIPKVIAGGDRHEDMALRLKVAGIPEEKLLEIADLEQVISEIKTLPTDH VYILATYTAVLQLRKSLTAQGYIQGGMNGV >gi|307679309|gb|GL456418.1| GENE 186 184479 - 185117 650 212 aa, chain - ## HITS:1 COG:VC0355 KEGG:ns NR:ns ## COG: VC0355 COG2964 # Protein_GI_number: 15640382 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Vibrio cholerae # 13 209 37 230 240 79 29.0 4e-15 MLSDEKLTFLTQIAKGLAGQFGENCEVVIHQINEDNINNSIVSIENGHVSSRHLGDGPSQ VVLEALKKDPSELNDHINYLTRTHDGRILKSSTMYFKDENGQLDGIFAINYDITTLIAAE SNLKSLISTAEPEEDKDPDYIPQDVNELLDDLIHESVKLVGKPVPLMTKDDKIKCIQFLN NKGAFLVTKSGDKVSNFFNISKYTLYSYIDAK >gi|307679309|gb|GL456418.1| GENE 187 185520 - 186854 1660 444 aa, chain + ## HITS:1 COG:ssnA KEGG:ns NR:ns ## COG: ssnA COG0402 # Protein_GI_number: 16130781 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Escherichia coli K12 # 24 443 45 461 464 248 34.0 1e-65 MLLIGNGRLITQDAQNHFFENGCVAIDGQVVKQVGTTEELKQAYPEATFIDAKGGVIMPG FINMHNHIYSTFARGLSLTNYHPKNFMDILVDQWWRIDRALTLEDTYQSGKVAYLDSIRN GVTTVFDHHASYGEITGSLTQLSNAADELGIRTCLCYEVSDRDGEQKMREAVQENAAFIK ASSLRKDDMQKAMMGMHAAFTLSDASLELCAANTPDGIGYHIHIAEDLADVHDSLKKYGK PIVNRLFDLGILGKQTMAGHCIHIGPHEMELLRDTDTMVVTNPESNMGNAVGCPPAMRMF NEYGILMGLGTDGYTNDVTESYKVGNVIHKHHLADPNAAWAEIPTMLFDNNPQMANRYFK TKLGVLEPNAAADVIIVDYHGPTPMTKENYNMHILFGMNGGMVTDTVINGEIRMRNREVQ GIDEEKVWHDAQTQAQSFWKRVNQ >gi|307679309|gb|GL456418.1| GENE 188 186885 - 189890 3020 1001 aa, chain + ## HITS:1 COG:ygfK_2 KEGG:ns NR:ns ## COG: ygfK_2 COG0493 # Protein_GI_number: 16130780 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Escherichia coli K12 # 439 954 1 530 582 394 42.0 1e-109 MSDIMHPISIEALLNWIFSEYQQDGTIFGIRKFYHADPTKTISLFGEKMETPCGPAAGPH TQLAQNIIAAYLTGSRFFEVKTVQILDGEDLPVSKPCIAAADECYNVEWSTELRVPQAYD EYVKAWFVLKLLSKEFELGDPNGFIFNMSVGYDLAGIQSPKIDRYINEMQNAEGTPIWAE CQAAAKKYLSYLKKVDDSYIEAISPKVCHSITLSTLHGCPSDEIERIAAYLLSEKGLHSF IKCNPTMLGYEYARQTMDELGFDYMVFDDHHFKEDLQFEEAVPMLQRLQLLANSKNLSFG VKITNTFPVTIAANELPGDEMYMSGRSLFPLSISLAQKLSEAFDGKLQISYSGGADIFNS KEIFDAGIWPITMATTLLKPGGYQRMNQVANVLSAAEYPQMVHVNLDKLAQVVEKAKTQA RYQKSIKLPESTKLRKTVPLTDCYIAPCRSDGGCPINQDIPAYLRYVSEGNYLKALQVIV DKNPLPFITGTICAHPCMTKCTRQFYEESIHIREVKLEAAEHAYDELLTTLEKPQPKENA PKTAVVGGGPAGISAGYLLAREGMPVTVFEKSETIGGVCSQIVPEFRISMESVQKDVQLA EFMGAEFRTGQEAPSLAELKNQGYTNVIYAIGAWKHGVLRLESGRALNSLEFLKANRENP TINPYGEQIVVVGGGNTAMDCARAATTLPGVKKVSVVYRRNKRNMPADEEELYLALEDGV DFLELLSPIKHENQQLTCEKMVLGERDASGRRRPIGTGEMIDIPADTVIAAVGEKVDTEF YQALGIHTDNYGKVVSNQETLETNIPGVYVIGDANLGPATIVEAIADATKAANNICLVHN HHYEKDNLNSDVAFVRNKRGILVTDEMSCSQASRCLECSTICESCMDVCPNRANIVVYVE GKPQIVHVDRMCNECGNCETFCPYASAPYKDKFTLFNSESDFYDSTNSGFYVQNPVDKIC LLRLWGTVSTIQLTDQGLDVPEDLIALMVTMIEEYAYCMQA >gi|307679309|gb|GL456418.1| GENE 189 189920 - 191293 1124 457 aa, chain + ## HITS:1 COG:SMc01821 KEGG:ns NR:ns ## COG: SMc01821 COG0044 # Protein_GI_number: 15966207 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Sinorhizobium meliloti # 1 454 1 452 484 350 41.0 4e-96 MSILLKGGTVVSAYNRRQLDIRIDGEQIVEMGANLPVENSQIEDVTGCYVLPGFIDAHTH LELNNGKGSLSTADNFTTGSQAAVAKGTTTVIDMATPNKGGSLKDCLATWNQLAEGKSSC DYTYHMSMIEWKPTIAAEIQEMIAAGITSFKMYMAYDNLRTTDAEIFEAMKEIKKVNGML GVHCENGDLVDELIQSYVSQGKLTPHYHPLSRPAAVEAEAVARYLMIAEMADLPVNIVHL STKRSLEAVERARQRGQSVYVETCPQYLLLDDHLYDAPNFEAAKYVCSPPLRKREDQQAL WQGIKEGAINTISTDHCSFNFHGQKTVGEDDFSKIPNGMPGVETRPELIYTEGVAKGRIT LESMVALLSENIAKQFSMYPQKGVVQEGSDADLVVWDPRTTGVIAARTQLQNVDYTPYEG FETQGQARMVYLRGQKVAEAGQVILANQGKFVFRKAT >gi|307679309|gb|GL456418.1| GENE 190 191317 - 192510 1261 397 aa, chain + ## HITS:1 COG:STM1002 KEGG:ns NR:ns ## COG: STM1002 COG1171 # Protein_GI_number: 16764362 # Func_class: E Amino acid transport and metabolism # Function: Threonine dehydratase # Organism: Salmonella typhimurium LT2 # 19 396 22 399 404 415 52.0 1e-115 MEKIKWTANEMPKTEDKYLPLMSKEKIEKALAFHKSFPQYSETPLAELNHMAAYLGLNDF FVKDESYRFGLNAFKVLGGSFAMANYIAEKLKKDVSELTYDELTSDQLRSAFGQATFFTA TDGNHGRGVAWAANKLGQKSVVLMPKGSTQTRKENIEKEGATVTIEEVNYDECVRMANKM AEETENGVMVQDTAWDGYEKIPTWIMQGYGTMALEASQQLRKFGSERPSHVFVQAGVGSL AGAVIGYFANAFPENPPIMVVVEAQAADCLYQSAIKKDGEIRFVDGDLQTIMAGLACGEP NTISFDILKNHTSFFVSAPDWVSEKGMRMLGAPLKGDPQVVSGESGAVAIGLVATVMQDP DYQELREALQLDETSNVLMFSTEGDTDPDNYKKILWR >gi|307679309|gb|GL456418.1| GENE 191 192516 - 193826 1569 436 aa, chain + ## HITS:1 COG:ECs3745 KEGG:ns NR:ns ## COG: ECs3745 COG0624 # Protein_GI_number: 15832999 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Escherichia coli O157:H7 # 3 431 7 396 403 525 59.0 1e-148 MDFNAVNAAAEGYREDMVKFLRDLVKIPGESAEEGNKIARAKAEMEKLGFDKIDIDPQGN LLGYMGSGEKLIAFDGHMDTVGIGEMSNWKFDPYDGYETETEIGGRGTSDQEGGIVSAIY GAKIMKDLGLLSEKYTSLVTVTVQEEDCDGLCWQYIIKEDGIRPEFVVSTEPTDGGIYRG QRGRMEIKVDVKGVSCHGSAPERGDNAIYKMADILQDVRALNNNGDTESTAIRGLVRMLD PKYNPEWQEARFLGRGTVTVSQIFHSSPSRCAVADGCTVSLDRRMTAGETWESCLEEIRN LPAVKKYGDDVTVSMYNYDRPSYTDLTYEIECYFPTWVIPENHDVTKALMETHKNLYGET RKGSVETVEMREERPLLDKWTFSTNGVSIMGRNGIPCIGFGPGAEAQAHAPNEKTWKDDL VRCAAVYAALPTVYCG >gi|307679309|gb|GL456418.1| GENE 192 193865 - 195058 1479 397 aa, chain + ## HITS:1 COG:ECs3743 KEGG:ns NR:ns ## COG: ECs3743 COG0078 # Protein_GI_number: 15832997 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Escherichia coli O157:H7 # 1 394 2 394 396 543 66.0 1e-154 METFKEYIEKLDKLEFEKMYENDFFLTWEKTRDELEAVFTVADTLRYLRENNISTKIFDS GLGISLFRDNSTRTRFSFASACNLLGLEVQDLDEGKSQISHGETVRETANMISFMADIIG IRDDMYIGKGNAYMHEVSESVQEGYKDGVLEQRPTLVNLQCDIDHPTQAMADALHLIHEF GGIENLKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVVLAHPEGYEIMPEVEEVA KKNAAEFGGNFTKTNSMAEAFKDADVVYPKSWAPFAAMEKRTELYGNGDQAGIDQLEQEL LSQNKKHKDWECTEELMKTTKDGKALYMHCLPADITGVSCEEGEVEASVFDRYRVELYKE ASYKPYVIAAMIFLSKVKNPQKTLTDLADKATPREVK >gi|307679309|gb|GL456418.1| GENE 193 195299 - 196243 1122 314 aa, chain + ## HITS:1 COG:yqeA KEGG:ns NR:ns ## COG: yqeA COG0549 # Protein_GI_number: 16130776 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Escherichia coli K12 # 1 309 1 308 310 356 63.0 4e-98 MGKRVVVALGGNALGNNLTEQMTAVKQTSKAIADLIEAGYEVILSHGNGPQVGMIQLAME EFSFNNPQYPVVPLSMCVAMSQSYIGYDLENALQEELRQRNISKAVTTIVTQVVVDENDP AFKKPTKPIGRFMTKEEAEQLVKEKNIQVMEDAGRGYRQVVASPKPKNIVELLTIQTLVD AGQTVIAGGGGGIPVIQEGNRLKGVNAVIDKDFCSERLAEQVDADLLVILTAVEKVCINF GKENQEALGNVSTEKMKQYAQEGQFAPGSMLPKVEAAIKFAESKPGRKTLITLLEKAKEG LSGKTGTLIENKES >gi|307679309|gb|GL456418.1| GENE 194 196258 - 196638 456 126 aa, chain + ## HITS:1 COG:slr0709 KEGG:ns NR:ns ## COG: slr0709 COG0251 # Protein_GI_number: 16331956 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Synechocystis # 1 124 1 127 130 133 55.0 7e-32 MTNKMINSAQAPAAVGPYSHSVLAGNTLYISGQLGLDPQSGEMKTTVEEQAKQAFINLGS ILKEVEMTYDNVVKTTVFLQHMSDFSKINEIYGNYFSEVLPARSCVEVAKLPKDGLFEIE AVAVKG >gi|307679309|gb|GL456418.1| GENE 195 196732 - 198051 404 439 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 11 439 6 427 447 160 28 8e-38 MNEKKEQALFEYDAKLSISEAIPMGLQHVVAAVVGIVTPGIMIAKVCQLSPSDTTILIQT SLIFSAVATLIQLFPIFGKVGSRLPVMMGASFAYVPILMAIGADFGIAAIFGSQLVGSIL VIIVGLFIKKIRVLFPPLVTGTVILSIGLSLFPVAIKYMAGGAGSADFGSARNWLVALLT FAIVFYFNYFAKGFLKLSAILNGMVIGYLISLALGMVSFEPVQNAKIVQVITPFHFGLDF QLVPIFTLVVMFIVDAVQAIGQFTATTVGAMDRDATDEELSGGIMGSGFTNFIGSLFGSI PVATFGQNVGLVTVTKVINKYVLVFASVILLIAGFVPKVAALLTTIPYAVIGGATISVFA SISMTGIRMIASQEMTPRNTGVVGTALAFGIGVTLSTGSLAGFPTWVTTIFGNSEVILTT LVAVLLNVILKPKKRVALE >gi|307679309|gb|GL456418.1| GENE 196 198145 - 198504 382 119 aa, chain + ## HITS:1 COG:AGc4647 KEGG:ns NR:ns ## COG: AGc4647 COG2005 # Protein_GI_number: 15889822 # Func_class: R General function prediction only # Function: N-terminal domain of molybdenum-binding protein # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 17 107 22 109 131 59 36.0 2e-09 MFTYSLNLKLKTDRNFFGPGVVEVLQKIQQTSSLNLAAKEMKMSYNKAWRIVRVAEEELS FPLIIKSVGGCNGGGSIVTDQGKELIDQYLLFEKKVYQQVEACFEEIFKEQDVVSEELK >gi|307679309|gb|GL456418.1| GENE 197 198501 - 199508 837 335 aa, chain + ## HITS:1 COG:CC2617 KEGG:ns NR:ns ## COG: CC2617 COG1975 # Protein_GI_number: 16126854 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family # Organism: Caulobacter vibrioides # 17 333 18 323 338 102 28.0 1e-21 MREVFQRLKQAILEKQDTMLLTIGTSSGSTPRSQGARMLVSAEGRIAGTVGGGAVEFQAE QVAKKLLIEKENAQRQFILAPNNIADLGMVCGGNVTIFFHYLSWETSFLKELCESIETHF QNNQQGWLMTELDQNNLGKVSFYSETGELIGSTSWEGELSLLPKGIHCEQKEEITFLTEA ILQVGKVYIFGSGHVARALVLILNYLSFYCVVVDDRPEFLTAQAFPQAEELRVIPLENLA AFIEITADDYGIVITRGHNFDFIVAKQLLETPAKYIGVMGSKHKIASQVRRLKEVGYTMN EIERIFMPIGLDIAAETPEELAISIAGELIQQRYQ >gi|307679309|gb|GL456418.1| GENE 198 199629 - 201314 1563 561 aa, chain + ## HITS:1 COG:BH0748 KEGG:ns NR:ns ## COG: BH0748 COG1529 # Protein_GI_number: 15613311 # Func_class: C Energy production and conversion # Function: Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs # Organism: Bacillus halodurans # 169 554 15 397 760 285 41.0 2e-76 MYSIIVNGQSETCETNKKLMDFLREDLGLTGTKDGCNQGSCGACTVLVNGKASKACLFTL EKLAGKEVTTIEGLSQRQKDVYAYAFAKTGAVQCGYCIPGMVISAQGLLNKKPEPTKEDI QKAIRGNICRCTGYVKIIEAIQLAAKMFCEEMSIPEEHSNGKLGEDFQRVDAVEKTLGTG IYVDDIDIEGMLHASALRSAYPRAKVLSIDSTQALAHPDCVAVFTAKDVPGNNKIGHLEF ISDWDVMIPEGEITRYVGDAVALVVSKRKETLPEIKNLVEVDYEEMIPLTSCEAALAEGA PAIHEKGNILSHEHLVRGNAEEVLANSAFVVSEHYSVPINEHAFMEPECAIAQPEGEGIL LFSAGQSIYDEQREVARMLGLDKEKIHVQSKLVGGGFGGKEDMSVQHHASLAAWLLKKPV KVLLSREESLMVHPKRHGMEMDFTTGCDEEGNLTAMKAVIYADTGAYASLGGPVLQRACT HAAGPYKYQTIDVEGFAVYTNNPPAGAFRGFGVCQTAFAIESNLNLLAEKVGLSPWEIRF KNSVAPGDTLPNGQLVSKNAA >gi|307679309|gb|GL456418.1| GENE 199 201324 - 202202 998 292 aa, chain + ## HITS:1 COG:mll4880 KEGG:ns NR:ns ## COG: mll4880 COG1529 # Protein_GI_number: 13474083 # Func_class: C Energy production and conversion # Function: Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs # Organism: Mesorhizobium loti # 30 285 470 755 774 115 34.0 1e-25 MLAVKDVYEQAEVAGISSFFKNSGVGVGLPDTGRCIISVEEGKIHVRTSAACIGQGMATV TTQIACETLNLPPEMIVAEAPDTRRTPNSGTTTASRQSLFTGEATRRAAMQLRYELDMGR ALSDLEGEEFYGEYSAKTDPLINDKKSPVSHAGYGYAAEVAILDDKGKVAKFVAAYDMGQ VVNPRAAEGQIEGGIAMGMGYALTEKFALEEGYVKAKYATLGLVNATQVPPIETILVHAD NLHEGLAYGIKGVGELATIPTAPALAGAYFALDGQLRPSLPLENTPYQKKKR >gi|307679309|gb|GL456418.1| GENE 200 202216 - 202797 743 193 aa, chain + ## HITS:1 COG:APE2223 KEGG:ns NR:ns ## COG: APE2223 COG2068 # Protein_GI_number: 14601923 # Func_class: R General function prediction only # Function: Uncharacterized MobA-related protein # Organism: Aeropyrum pernix # 8 186 1 189 205 87 32.0 1e-17 MSLVSVIILASGNSQRMGQNKLFLKYQGKTFLEHTLTLVNQLDVLERILVVSPENQPAFP LPKNIQLILNHQWQEGQSSSIRLGTEQARGAGYLYLPSDQPLLTPKMLQPVLDKCQRNKI VVPLQKDGCPSSPVLFGNQFRQELLTLTGETGGRMIYERFPEAVQMLRIATPGRLKDIDT PEEYRKLIQETNS >gi|307679309|gb|GL456418.1| GENE 201 202811 - 203959 1052 382 aa, chain + ## HITS:1 COG:CAC2354 KEGG:ns NR:ns ## COG: CAC2354 COG0520 # Protein_GI_number: 15895621 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Clostridium acetobutylicum # 4 380 1 374 379 240 38.0 3e-63 MKDLVYLNYAATSYKKFPATIEALTAYLAENQFMNYGRNAPLLREELPLLETRQLLADFF QAPSAAQITFTNNATTSLNLALAGLLQPGDHVITTMLEHHAVARPLHLLEKERGISVTYV ACQKTGLLDVEDIQRAWRTNTKALVMTHASNVLGTILPIEECFQWAQQKGLLTILDAAQT AGFLPIKMTQMAIDVLAFTGHKSLYGLAGIGGLAFSERGAEAVKPLMTGGTGSHSNSFDQ PSFLPDKFEAGTLNSLGILSLNSSVKELNKIGLAAIQKHERTLMQNFLNGLSGLPVTILG TKDVAQTVPVVSITLWNQEETVVAQQLAEQYGIMTRAGLHCAPLAHETAGTLATGTLRFS FGWQTTPEEITWTIHALQELLI >gi|307679309|gb|GL456418.1| GENE 202 203975 - 204997 939 340 aa, chain + ## HITS:1 COG:SMa0028 KEGG:ns NR:ns ## COG: SMa0028 COG0709 # Protein_GI_number: 16262467 # Func_class: E Amino acid transport and metabolism # Function: Selenophosphate synthase # Organism: Sinorhizobium meliloti # 10 339 15 348 349 214 41.0 2e-55 MDFLSQCTSGGCGAKIESRVLNQLLQHLPETPANERLLVGFEHADDAAVYQITSEKALIS TVDFFSPMVNDPLSFGKIAVANALSDVYAMGGTVLYALNLVCFPQKMSKEWLEQMLLGGS LKLKEAGALLAGGHSIYDHEPKYGLAVTGEVHPENLWHNNTPQVGDVLILTKALGVGIIQ AAVRGQLAKQTEQKIAQDSMERLNKYAAANARSYAVHACTDVTGFGLLIHAKEMADNQVT LLIDTEALPTITGALAYAAECLVTAAGQRNRQTIGTTIDYSKISMEMQELLFDPQTSGGL LISVAADEAAACLAAIQKEDPVAKIIGEVLPKEQQAVVLL >gi|307679309|gb|GL456418.1| GENE 203 205013 - 205600 742 195 aa, chain + ## HITS:1 COG:no KEGG:EF2566 NR:ns ## KEGG: EF2566 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 195 1 195 195 322 99.0 4e-87 MKLVDALGKPCPIPVIETKKALAELGLAGGTIEVLVDNEVAVENLKKLATKKQATLTAKQ IEATVFSVKITVPEEATQQTSQSATDLVITIGSDQLGTGDEQLGRLLMKSYLQSLSEAET VPTQLLFFNRGAFLTNQAANTLADLQQLAEKGTTIQTCGACLDFYHLTDTLAIGSITNMY EIVETMNQAAKVITL >gi|307679309|gb|GL456418.1| GENE 204 205620 - 205877 181 85 aa, chain + ## HITS:1 COG:no KEGG:EF2565 NR:ns ## KEGG: EF2565 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 85 1 85 85 172 98.0 4e-42 MEYLLTFPNTHYAVQAEQVLLTRKVAVRVFTLPPSLTDGCGIGLLINEAEITHSVCFLEE AKVRVASIFSVKNDLGERRYQLWSP >gi|307679309|gb|GL456418.1| GENE 205 205865 - 206620 463 251 aa, chain + ## HITS:1 COG:no KEGG:EF2564 NR:ns ## KEGG: EF2564 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 251 1 251 251 481 98.0 1e-134 MESLKKCFDLQGKEIVSIVGSGGKTSLMWALAKTYRKEAVLVSTTTKIGFPQRQLYDYFY TNHFEKITPNICGITLAGTAINNQTKLTMPAMTSLQILFQHFTKVFLEADGSKQRPLKGW SSYEPVILKETTTTIGVLPISVIGQKIDETTIHRLPLFLELTDAQLQEPITETLLAQLIA HPKGLFKESQGQRILCLNQTHTRREFVQAMNVCLQLPKSCFEKLDKIIACNMELEKGLIL WEKSVKTSKKN >gi|307679309|gb|GL456418.1| GENE 206 206584 - 207414 882 276 aa, chain + ## HITS:1 COG:yqeB KEGG:ns NR:ns ## COG: yqeB COG1975 # Protein_GI_number: 16130777 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family # Organism: Escherichia coli K12 # 11 269 269 526 541 234 47.0 1e-61 MGEISQNIQEKLVIVRGGGDLATGVIQKLWHVGFKILVLETECPLAIRRTVSVCDAIFQK EQRVEDLVAVRITSLKDCAKCWQQNKLPVFVDQTASAIQQLKPLIVIDAILAKKNLGTHR GMAPITIALGPGFSAPQDVDVVIETMRGHRLGRLYFEGTALPNTGIPGEIGGKSAERVVH APASGQVTHLKNIGDLVLKGEALFLIDQVPVYSPLTGTLRGLISEKVTCYQGLKCADVDP RPVEKVDCLTISDKARALGGAVLEAIFMIGRSKNVL >gi|307679309|gb|GL456418.1| GENE 207 207656 - 208114 594 152 aa, chain + ## HITS:1 COG:SPy0721 KEGG:ns NR:ns ## COG: SPy0721 COG0716 # Protein_GI_number: 15674777 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Streptococcus pyogenes M1 GAS # 1 149 1 148 149 126 50.0 1e-29 MALVKIVYASMTGNTEEISEILEEQFQEAGVEVEREECSEVDVDFFDDADACIIATYTYG DGELPFEFEDFFDELTEKDLAGKPFGVVGSGDREYGEFFCKSAHDFVGAFEKAGAKKVAE TVEIENNAEEEDIEMLKTFVKSVATTLSDSVA >gi|307679309|gb|GL456418.1| GENE 208 208170 - 209009 1022 279 aa, chain + ## HITS:1 COG:TM1639 KEGG:ns NR:ns ## COG: TM1639 COG0543 # Protein_GI_number: 15644387 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases # Organism: Thermotoga maritima # 4 276 9 280 282 325 53.0 5e-89 MFNILQSTQLSSNTFDFWLEAPRIATHAQAGQFVILRIDEKGERIPLTIAETNPQAGGIR IIFQVIGKTTAALSQLKTSDSLLDITGPLGMPTEVKQYGTVMVVGGGVGIAAIYPIIKAL KEAGNRVITILGARTAELVLLQEECRRYSDELIITTDDGSLGKKGLVTEAMEEVIARESV ACSWAIGPSIMMKFCTLTAEKHQLPIYVSLNPIMIDGTGMCGDCRVTVDGTMKFACVDGP EFKGNEVNWDEFINRMKQYQEEEAVCFTDCLKEQVEKNG >gi|307679309|gb|GL456418.1| GENE 209 209002 - 210420 1465 472 aa, chain + ## HITS:1 COG:TM1640 KEGG:ns NR:ns ## COG: TM1640 COG0493 # Protein_GI_number: 15644388 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Thermotoga maritima # 8 461 5 459 468 586 63.0 1e-167 MARKSRIKTPIAEQVPTIRKNNFEEVCLGYTLAEGQEEAIRCLQCKNAPCIAKCPVMIDI PGFILAIREGNMEQATDILSKYTNLPAICGRVCPQEKQCEQVCKLGKAKNFEPVAIGKLE RLVADWALENHMFPKKTAEPTKGKIAVVGSGPSGLTVAGDLAKLGYEVIIFEALHEAGGV LTYGIPEFRLPKKIVKQEIASIEALGVTIETNVVVGKTITMEEIMSEFDACYLSVGAGAP NFMGIPGTSLNGVYSSSEFLTRINLMHSYEFPEYDTPIKRAKNVVVIGGGNVAMDAARSA KRLGAENVNIVYRRSLEELPARIEEYHHSLEEGINYYWLTNPIAYLDDQQGNLAGVECVK MVLGEPDVSGRRRPEPVPDSTFTIPADAVIEAIGQGANRVLLSTYPEIELNQWGYIQADP KTGATSIPGVFAGGDIVTGAATVILAMGAGKIAANAIDQYVKTQKTTVTSNV >gi|307679309|gb|GL456418.1| GENE 210 210441 - 213974 3799 1177 aa, chain + ## HITS:1 COG:lin0824_1 KEGG:ns NR:ns ## COG: lin0824_1 COG0674 # Protein_GI_number: 16799898 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit # Organism: Listeria innocua # 2 411 4 411 414 600 70.0 1e-171 MKKTMDGNTAAAYISYAFTEVAAIYPITPSSTMAELVDEWAESGLKNIYGQKVQVIEMQS EAGAAGVVHGSLKTGALTTTYTASQGLLLMIPNMYKIAGELLPSVFHVAARAVTTSALSI FGDHGDVMATRQTGFCMLAESSVQEVMDLSAVAHLASLEGSLPFVNFFDGFRTSHELQKI EVIDYDDLKEMVNQEAVTRFRMGGMNPNHPTVSGTAQNPDIHFQQRETVNKNYEEMPKIV QKYMEKINHLRGTTYDLTDYYGVEDATEVIISMGSASPVIKQTVDYLNQQGRKVGFINIH LYRPFPTENLLEKLPATVEKVAVLDRTKESGAEGEPLLLDVQSALYQHENRPIVIGGRYG LGSKDVAPNQIKAIYDHLLLPFKELKQRFTVGIVDDVTYQSLPEEPTLDLTPDTTFQAKF WGFGSDGTVGANKQAIKIIGDHTYLYAQAYFGYDSKKSGGLTVSHLRFGKEPITSTYLIE QADFIACHNASYLHKYDLLKGLKDGGTFLLNTIWDQEKVHRLLPAKLKKYIGEHQIKFYI INAVELARKVGLGRRINTVMSTAFFEVTNILTKEQYLPLLKEEVKKTYGKKSMEIVEKNY QAIDATFESLQEIVVPEDWATIVLEPENQESEVPAFVTNILEPINRQEGDQLTVSDLIEN GMKGGAIPMGTAAYEKRGIALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAP AGFAMREMRGTDGLMYRIQVSLEDCTGCGLCVQACPVKDKAILMKPYETQKEQAMNWAFA MTLKQKANPVKKLSVKGSQFNQPLMEFSGACEGCGETPYIKLLTQLFGDRMMIANATGCS SIWGGSSPVTPYTTNECGQGPAWSNSLFEDNAEYGYGMYIANRTKRQHLASLVEESLAKN VGSDSLQALLNDWLEHMAEGEGTQQRATKLAAALSEEADEDPLLTKIYEQKDLLVKTSQW IVGGDGWAYDIGFSGIDHVLASGEDVNIFVMDNEVYANTGGQTSKATPASAIAKFSAGGK HTSKKDLGMMAITYGNVYVAQVALGANSMQTIKAIDEAERYPGPSIIIGYTPCINHGVKG GMVRTLDQAKEAVESGYWPLYRYNPELVKKGKDPMVIDYKKTDFDKMRDFLEKQTRYSAL HTIKQNQEVVEHLLDKTKEDAIERSESYNKLVTHMKK >gi|307679309|gb|GL456418.1| GENE 211 214011 - 215426 1180 471 aa, chain - ## HITS:1 COG:lin0992 KEGG:ns NR:ns ## COG: lin0992 COG0168 # Protein_GI_number: 16800061 # Func_class: P Inorganic ion transport and metabolism # Function: Trk-type K+ transport systems, membrane components # Organism: Listeria innocua # 23 471 6 445 445 330 44.0 3e-90 MNHTRLLWLAQRKSDRFIRKNFSSIQIIVAYYILMTVISYLLFCLPIFREPDSHVPFIDL FFLAISTVSVTGLTTVDINSVFNDRGIVLLEVLFQVGGLGIMMISTVFFILSKRRITLKQ RQLIMTDMNQPRLSGIVRLIRTTFLILIWFQVIFGSLFSLYFYISGYYTNWRDAIFYGFY QAISAVTNSGFDISGDSIIPFAHDYLFLLAIMFLIFIGGIGFPVLLEIHEWLHFKKKNFR KKKRGLPFRFSLFSKIALLAFIVLFIGGTILIYLLEKDHLFLTMNESGRWVSSMFYSMTT RNAGLQINDLGDFQITTLIIFSVLMFIGCSPSSVGGGVRTTTVAIIGLYLLAFLKSEDDI SVFSRKIDDDDVKKSIVVFMLSLIMCFFAVVFLSATENLPLISIIVEVASAFGTTGLSLG ITDDLTTVGKLMIALLMFIGRIGMLYTLMIFVPKETRDLGYEYPSEKIIIG >gi|307679309|gb|GL456418.1| GENE 212 215796 - 217313 2198 505 aa, chain + ## HITS:1 COG:lin0374 KEGG:ns NR:ns ## COG: lin0374 COG1053 # Protein_GI_number: 16799451 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Listeria innocua # 5 504 9 506 506 612 67.0 1e-175 MKKVLMGVLSLGLLLGAATGCTSDQEKAAGKTKASSEKTEATSGASANGYTDPSELKDSY DVVIVGSGGAGMTAALQAKEAGMNPVILEKMPVAGGNTIKSSSGMNASQTKFQEKEGIKD SNDKFFEETLKGGKGTNDQELLRYFVDHSAEAIDWLDTKGITLSNLTITGGMSEKRTHRP ADGSAIGGYLVDGLVRNVREEKIPLFVDADVTDLVEENGQIDGVKVKMKDDKEKTVKAKA VVVTTGGFGANEKLITQYKPELKNYVTTNQEGTTGDGIQMIQKVGGALVDMKEIQIHPTV QQSDAFLIGEAVRGEGAILASQKGERFVNELDTRDKVSAAINALPEKSAYLVFDQGVRDR AKAIDFYDQKGFVEKGETIEELAEKIGMPADTLKATIDTWNQDVNAKDDKQFGRTTGMEA DLSTAPYYAIKIAPGIHHTMGGVKINTKTEVLREDGTPIKGLYAAGELTGGLHGQNRIGG NAIADIIIYGRQAGTQSAEFASAQK >gi|307679309|gb|GL456418.1| GENE 213 217540 - 218124 536 194 aa, chain + ## HITS:1 COG:L184871 KEGG:ns NR:ns ## COG: L184871 COG1435 # Protein_GI_number: 15672575 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine kinase # Organism: Lactococcus lactis # 1 188 1 188 189 308 75.0 3e-84 MAQLFFKYGAMNSGKTIEILKVAHNYEEQDKPVVLMTSGLDTRDGVGKVSSRIGLRRDAI PIFEETNVFDLINDLSYKPFCVLVDECQFLNKHHVIEFARIVDELDIPVMAFGLKNDFRN ELFEGSKYLLLYADKLEELKTICWFCHKKATMNLHYIDGKPVYEGDQVQIGGNEAYYPVC RKHYFHPKTVNEEQ >gi|307679309|gb|GL456418.1| GENE 214 218136 - 219209 1426 357 aa, chain + ## HITS:1 COG:SPy1141 KEGG:ns NR:ns ## COG: SPy1141 COG0216 # Protein_GI_number: 15675118 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor A # Organism: Streptococcus pyogenes M1 GAS # 1 356 3 359 359 479 73.0 1e-135 MYDQLQSIEDRYEELGELLSDPAVISDTKRFMELSKEEANTRETVEVYRRYKQVVEGISD AEELLSENLDAEMAEMAKEELSDLKKEKEVLEDRIKILLLPKDPNDDKNIIMEIRGAAGG DEAALFAGDLFNMYQKYAEAQGWKAEVLEANVTGIGGYKEVIMMISGDNVFSKLKYESGA HRVQRVPSTESQGRIHTSTATVVVMPEAEEVEIELADKDIRVDIYHASGAGGQHVNKTAS AVRLTHLPTGIVVAMQDERSQLKNREKAMKVLRARVYDQIQQEAQSEYDANRKSAVGTGD RSERIRTYNFPQNRVTDHRIGLTIQKLDQILAGKLDEIIDALVLYDQTSKLEEMQNG >gi|307679309|gb|GL456418.1| GENE 215 219202 - 220035 239 277 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169796031|ref|YP_001713824.1| putative adenine-specific methylase [Acinetobacter baumannii AYE] # 49 249 74 296 334 96 30 1e-18 MAKRYFEVLNWASSFLEAQGKEGYAIHYVFLERKGWDKTQWLLHMQEEMPKEEEEQLKTD LAQLLTDYPAQYLLGQAEFYGHSFIVNEHTLIPRPETEELVERCLKANPDTPLTVVDVGT GTGAIAISLKLARPNWRVIAIDLSEEALTVAKQNAQALGAGIEFYHGNGLQPVASEKIDL LISNPPYISEQEWHLMDASVRTYEPKTALFAENNGLALYQQLIHESQTMLKADGKIYFEI GFQQGAALQELLSAAYPQKTIKIEKDLSGNDRLAIAE >gi|307679309|gb|GL456418.1| GENE 216 220079 - 221101 1271 340 aa, chain + ## HITS:1 COG:lin2685 KEGG:ns NR:ns ## COG: lin2685 COG0009 # Protein_GI_number: 16801746 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Listeria innocua # 13 336 20 341 345 299 47.0 7e-81 METKKLTKQEIAQAAAAIQAGELVAFPTETVYGLGAAALNEAAVKKVYQVKGRPSDNPLI VHVNNVEMVKKYVATLPEVATKLVSAFWPGPLTLIFNVPSDTFSKTVTGGLETVAFRMPD NQATLALIEQANVPLVGPSANTSGKPSPTSAEHVYHDLQGKIAAILDDGPTQIGVESTVL DLTAEDGVPVILRPGAITKEQLESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWI ISGQTAEWQAAIQQAKEQQEKIGLFLSDEQAAQLDTENAFVYSYGAETVENATKELFAGL RALDEQGATTIFAQGFAETGLGTAYMNRLKKSANQKFFEK >gi|307679309|gb|GL456418.1| GENE 217 221177 - 222415 1529 412 aa, chain + ## HITS:1 COG:SP1024 KEGG:ns NR:ns ## COG: SP1024 COG0112 # Protein_GI_number: 15900895 # Func_class: E Amino acid transport and metabolism # Function: Glycine/serine hydroxymethyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 2 411 7 416 418 594 72.0 1e-170 MDYKTYDPDLWNAIAREEERQENNLELIASENVVSKAVMAAQGSILTNKYAEGYPGKRYY GGCEFIDIVENLAIDRAKELFGAKFANVQAHSGSQANTAAYLSLVEPGDTILGMDLSAGG HLTHGSPVNFSGKTYNFVSYGVDPSTEVIDYDVVRILAREHRPKLIVAGASAYSRTIDFK RFREIADEVDAKLMVDMAHIAGLVASGLHPNPVPYADIVTSTTHKTLRGPRGGLILTNSE ELAKKVNSSIFPGIQGGPLEHVIAGKAAAFKEALDPSFAEYSQQVIANAQAMTKVFNQAP EARLISGATDNHLLLIEVTGFGLNGKEAEAILDSVNITVNKNSIPFEQLSPFKTSGIRIG TPAITSRGFKEEDAVEVAKLIVQVLKDPENTAVHDEVKAAVAALTKKYPLYN >gi|307679309|gb|GL456418.1| GENE 218 222547 - 223176 835 209 aa, chain + ## HITS:1 COG:SP0745 KEGG:ns NR:ns ## COG: SP0745 COG0035 # Protein_GI_number: 15900640 # Func_class: F Nucleotide transport and metabolism # Function: Uracil phosphoribosyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 209 1 209 209 333 78.0 1e-91 MGKFQVIDHPLIQHKLTMIREKNCGTKVFREVVNEIAMLMAYEVSRDMPLEDVVIETPMG KSTQKTLSGKKVAIIPILRAGIGMVDGILELIPAAKVGHVGLYRDEETLQPHEYFVKLPE DIASRQLFVVDPMLATGGSAIMAIDSLKERGASNIKFVCLVAVPEGVKALQEAHPDVDIY TAALDERLNEDGYIVPGLGDAGDRLFGTK >gi|307679309|gb|GL456418.1| GENE 219 223282 - 223554 316 90 aa, chain + ## HITS:1 COG:no KEGG:EF2548 NR:ns ## KEGG: EF2548 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 90 1 90 90 177 100.0 1e-43 MKKNKKALHAIAVIASVMSVLMYVSYIPQIYGNLHGEKGNPTQPLVAMINCIFWTIHGLY GDDGETRDKSIIFANVPGIIFGFFAFITAL >gi|307679309|gb|GL456418.1| GENE 220 223628 - 223864 213 78 aa, chain - ## HITS:1 COG:no KEGG:EF2547 NR:ns ## KEGG: EF2547 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 78 1 78 78 134 100.0 2e-30 MSNFNGMVTPVVPSDAGKDFAVDTHVTFLVHGQPQTGVVTKQLKNAAVVEIDETQKNNHL MVHSNGVIVINYKQLKKI >gi|307679309|gb|GL456418.1| GENE 221 224145 - 224471 339 108 aa, chain - ## HITS:1 COG:L54406 KEGG:ns NR:ns ## COG: L54406 COG4392 # Protein_GI_number: 15673594 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 1 105 1 105 108 104 66.0 4e-23 MPSSEYLFLTILGCTVATWLSRILPFLLLKKISLPQKLLEYLSFVPIVIMSALWFSSLFE QRIGHLPSLNLPYLFASFPTILAAILSKNLLLIVLVGIASFALIQNFI >gi|307679309|gb|GL456418.1| GENE 222 224458 - 225165 806 235 aa, chain - ## HITS:1 COG:L54719 KEGG:ns NR:ns ## COG: L54719 COG1296 # Protein_GI_number: 15673595 # Func_class: E Amino acid transport and metabolism # Function: Predicted branched-chain amino acid permease (azaleucine resistance) # Organism: Lactococcus lactis # 1 235 1 235 235 243 60.0 3e-64 MNHQLDTRTGIREALPTVFGYIGIGIAFGIVGQAAGFSPLIVSAMSFFIFAGSAQFVTVS MLTGGSPILSIVLATFLVNARMILMGMTIAPYFKAESLGKNLWLGTLLTDESFALGMNKL NHTKGRLSFEWFNAANLISYATWVFSTIIGAYLGRFIANPQALGLEFAVVAMFIGLLYLQ IISDRSMKIALQLIMVLITFGLMSIGLIFIPSNLIVLVVTLIGCGIGVMIKHAFF >gi|307679309|gb|GL456418.1| GENE 223 225162 - 225263 134 33 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKTLIRSLFLIIEGLDFHTHVFKFYTERRKKRE >gi|307679309|gb|GL456418.1| GENE 224 225379 - 225930 567 183 aa, chain + ## HITS:1 COG:BH2909 KEGG:ns NR:ns ## COG: BH2909 COG1396 # Protein_GI_number: 15615472 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 7 173 10 174 189 131 38.0 6e-31 MEINTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNV PYTYLLEDDYVKENPVVKKTETVTQHSEDHSYRVFNYYSDNQERNFELFQFELDPGKKYQ AVGHSKRSTEYVMVIQGALALEVGGQRYLLPKDAAMYFDANQVHTYINDGTEKVQAVVIN YYT >gi|307679309|gb|GL456418.1| GENE 225 226043 - 227374 927 443 aa, chain + ## HITS:1 COG:no KEGG:EF2507 NR:ns ## KEGG: EF2507 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 443 1 443 443 662 99.0 0 MNKKIESLGNTALSLLSNTIIVVPYLLYIQLSDGHNLLTILPFVLFYTLRMTGIFLVRGI NLSLTSLGLLKISLLLGLAGSLIGIAGAYSFPLYSISGMLLGLSGALLPPSNQSIRFFLK EEGQKISHSNLLTTVLLTAVLFGALFFKATEIGLALLVYALYFLVALVAIKSYPVSLNEL EEESAEVSRKELILFVIFFVLLLLLRSGRLLTNAVEFDYAIVGACCFFVVAVLFVSHYGK RGAYKVSLEMNLATLINGIVGNYLFLFGSIYVAGVYGRAHMGIYLYLPYVLGMIFAMIAA SKTKQWSNNIPMIGLAGSLGILLFTSWTILGLFLLSFFKSTLNSFLARRYYQETDLPKDS RILIKYTTQTKGSLFHQFILMALMLVTVVGKGGTTQFLLELTGGKGISMQTSQFLTFIKN SNSLLVLLFIAVYFVVVFRQKKR >gi|307679309|gb|GL456418.1| GENE 226 227574 - 228776 1215 400 aa, chain + ## HITS:1 COG:no KEGG:EF2505 NR:ns ## KEGG: EF2505 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 394 9 402 1651 634 98.0 1e-180 MMLSILLAQNFGFAVNAYAVTTTEAQTETTDTAKKEAELSNSTPSLPLATTTTSEMNQPT ATTESQTTEASTTASSDAATPSEQQTTEDKDTSLNEKALPDVQAPITDELLDSMSLAPIG GTEYSQTEVHRELNTTPVTATFQFAVGNTGYAPGSVYTVQLPEHLGYSTVSGDVTGIGAT WAVDAATKTLSITFNQRVSDTSFKVELKSYLTTEAEPLIKIETPGKNKKTYSFDLYEQVE PIQYNERTRTTGLDGEIFYNLDRTLTGNQTLELLTTETPGAVFGKQDNLEPQVFSYDVDI NGQILPETQTLLTPGKDYTLSDNSLGRIAITVPNMNQQKAYSLSINRTIYLESASDYNYL YSQQYPTTKIGSISLKSTTGTKQTTDFTAKTSQSEDESNK >gi|307679309|gb|GL456418.1| GENE 227 228796 - 231234 2251 812 aa, chain + ## HITS:1 COG:lin2282 KEGG:ns NR:ns ## COG: lin2282 COG4932 # Protein_GI_number: 16801346 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Listeria innocua # 333 619 799 1092 1806 68 27.0 4e-11 MRSMSYVSFQSKGKYYVTIYGTLTETKVGQQIVLESTNGQEIKNPKFTAYGPLYENVKLE DYFDIKTEGGKLILTATKDSYLRINISDLTMDFDKKDINLSLSTPVIGPNKAIQLVSDQY IEPISVVNPLNAETAWGNYDQNGAYSSRTTVSVMGSKETPIQNLEIKVKHPNYLSLRATK EIYFYYKLGTDYTVTPTSDGSVIKFTTPITNEIQIPIGFNYVPDSLPKDKSIPVDTIPIT MSAEGLTPVDTTVTTNSKRGSERTLQSSKNQFLVNARNDSFDSLSVRTKIPAGADVLFDI YDVSNDQVDSIYPQYWDRGYYFDKPMSPDSPGYPTITFDENTNSYTFDFGKTNKRYIIEY KNANGWIDVPTLYITGTAKEPQSNNNEGSASVSVQNEALDILSATQAANPTLKNVTKTTV TTKNIDNKTHRVKNPTIELTPKGTTNAQIDLNSITVKGVPEDAYSLEKTTNGAKIIFKDY TLTENITIEYNTVSANAGQIYTETTIDSETLDQMSANKKKVTTAPITLKFSEGDAEGIVY LATATFYTHNIEDENQAIAKVSFELIDNVTHTATEFTTDEKGQYSFDAIMTGDYTLRVTN VPQEYSVDEEYLTGKAIKLVKGDNQLKIPLTKTIDHSRLQVKDTTIYVGDSWKPEENFVS ATDKTGQDVPFEKITVSGQVDTSKAGVYPIVYSYEGKEETANVTVKADQSKLEVKDTTIY VGDKWEAEDNFVSATDKTGQDIPFEKIDVQGTVNVDKIGDYEIVYKNGTKEAKAIVHVRD DSRLQVKDSTIYVGDSWEAEENFVSATDKTAS >gi|307679309|gb|GL456418.1| GENE 228 231308 - 232222 750 304 aa, chain + ## HITS:1 COG:no KEGG:EF2505 NR:ns ## KEGG: EF2505 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 304 1348 1651 1651 502 96.0 1e-141 MGDSWKPENNFVSATDKTGQDVPFEKIDVQGTVNVDKIGDYEIVYKNGTKEAKAIVHVRD DSQLEVKDSTIYVGDSWKPEENFVSATDKTGQDVPFEKITVSGQVDTSKAGVYPIVYSYE GKEETAHVTVKPDQSKLEVKDTTIYVGDSWKPEDNFVSATDRDGHAISFDKVQVKGEVDT KKTGEYQISYTTEPVNETKPAVQSRLFSMFSNETPRQLTTVATVHVIDRNPTPLPDKNEN NQTSSSTNQTTIKRSQYVTHIVKPDKQGRYPKTGEQTNGLYRVLGLVVLLIVIISGIVIK KKRK >gi|307679309|gb|GL456418.1| GENE 229 232421 - 233122 517 233 aa, chain + ## HITS:1 COG:no KEGG:EF2504 NR:ns ## KEGG: EF2504 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 233 1 233 233 417 98.0 1e-115 MNQRTIYYGSIGTALFLSSGMLIASVNSYANEATTLGKYTVTYEVDGKIETATITVKENQ TELKLKDTFLEVNQAWSPLDNVVFLKDKEGRPLNLENVIIENNVNTQKVGLYFVTFRYES YLSIAKVYVNPTNFAAEGNMLAELPYSQAMIGPERPIIASRQDKEQQTKQEKKKNKIEQE RVNKKVLLNDELLKKIDTIAPVEITGGAASGSSQFGTTLSFLSGSLLYGTRRV >gi|307679309|gb|GL456418.1| GENE 230 233123 - 234559 1150 478 aa, chain + ## HITS:1 COG:no KEGG:EF2503 NR:ns ## KEGG: EF2503 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 478 1 478 478 865 99.0 0 MEFLLLDDRENLKLAIIRKLEQQYSFSERKDRLCKQLAISPYLLERNITEINADLQRFGL INEMEISEKNNEILLSQSLRISSSIIEEYYLKDSLEFNLLKTIFFHQFTSIKKYGEKHGM SRTVVYKIVDHIRKELGQYGIKLSKNLQLSGNEMAIRQYFTMLYYRIYKDSEEVYNQTDL RAVNQLLAQLKGSYENITNFHLFKHYVLVALERTQRKANYFLSQEENPFAFDEESSIYQE IQSWINEVMKATHAEKNAEIQGIIGNLSVYQSELISEHLLSSHNEAITATKTLFFSYMPF TISDEEFYQEIVPIIYQHRFITPFIDITLRIMDLEFFQERYPIVFNSCRQFLFALDCSAF EFSKLSLFFDLLLVLSRLYDQRNEKSTINLYVNFTQGEKYTQFIKEQIKIFESFSIHFHS AIRPDTDLVVSDYLPKTLFSVKCLIWLAPPRASDWQNFGNEIVRINKELQQTKQRKSE >gi|307679309|gb|GL456418.1| GENE 231 234803 - 235990 1260 395 aa, chain + ## HITS:1 COG:L115706 KEGG:ns NR:ns ## COG: L115706 COG0772 # Protein_GI_number: 15672878 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Lactococcus lactis # 3 386 5 388 414 377 52.0 1e-104 MNRKEKTNLDSRIDYGVILPVFLLSLIGMLSLYVALYNDPSKPKIGSLLMKQGLWYLVGG LSIVIIMHFSSKLLWRLTPVFYALGLVLMGLLLKFYDPVLAEQTGSKNWIRFGGTTFQPS ELMKIAFILMLAYIVTMHNVKYVDRTLKSDFWLIAKMLLVAIPVIVLVLLQKDFGTMLVF LAIFGGVFLMSGITWKIIVPVFILAALVGAGTIYLITTETGRDLLSKLGVEAYKFDRIDL WLNPFHTDPDRSFQPALALTAIGSGGLFGKGFNVSDVYVPVRESDMIFTVVGENFGFIGG CFIILLYFILIYRMIRVCFDTNNEFYAYIATGIIMMILFHVFENIGANIGLLPLTGIPLP FISQGGSSILGNMIGVGLIMSMRYQQETVRTRSGR >gi|307679309|gb|GL456418.1| GENE 232 236015 - 236374 441 119 aa, chain + ## HITS:1 COG:lin2520 KEGG:ns NR:ns ## COG: lin2520 COG1393 # Protein_GI_number: 16801582 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Listeria innocua # 1 115 1 114 117 129 55.0 1e-30 MYTLYEYPKCSTCKKAKAWLDQQGVKYQAIDIKATPPSSEQLAKWMKETGLPVRRFFYTS GVLYREQGLKDLVDSFSIEEASQRLAADGMLIKRPILLKDNTFLTNGFKEADYEGVLGK >gi|307679309|gb|GL456418.1| GENE 233 236371 - 236694 519 107 aa, chain + ## HITS:1 COG:lin2519 KEGG:ns NR:ns ## COG: lin2519 COG0509 # Protein_GI_number: 16801581 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system H protein (lipoate-binding) # Organism: Listeria innocua # 11 107 15 114 125 72 39.0 3e-13 MSEMKQIDQLWILPTEAGYKIGLTAEAQEDLGKITFATFPKVGQTLAKGDSLIELEAEKA VSEFSSPLSGKVIAINEAADQEPSALDEENAWIAVLADVEPTEFENL >gi|307679309|gb|GL456418.1| GENE 234 236868 - 236948 108 26 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNLLRGARYSQRYAKNQVPYEVIIEK >gi|307679309|gb|GL456418.1| GENE 235 237109 - 238146 1330 345 aa, chain + ## HITS:1 COG:lin2514 KEGG:ns NR:ns ## COG: lin2514 COG1135 # Protein_GI_number: 16801576 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Listeria innocua # 3 342 1 338 340 388 59.0 1e-108 MALIELRHVKKEFSGKAGKVTALKDIDLTVESGDIYGIIGYSGAGKSTLVRLLNGLETPT EGEVEIQGQDIALLPNKELRNFRKKIGMIFQHFNLLWSRTVLENIMLPLEIAGVPKQNRK SRAEELIKLVGLEGRENAYPSQLSGGQKQRVGIARALANNPDILLCDEATSALDPQTTDE VLELLLKINQELNLTVVLITHEMHVIRKICNRVAVMEYGEIVEEGKVIDIFKKPQTEIAK RFIQQEADKNIEETELVVEEMLEQYPNGKIVRLLFHGEQAKLPIISHIVQEYQVEVSIIQ GNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLRVETEVIGNE >gi|307679309|gb|GL456418.1| GENE 236 238139 - 238825 797 228 aa, chain + ## HITS:1 COG:BH3480 KEGG:ns NR:ns ## COG: BH3480 COG2011 # Protein_GI_number: 15616042 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Bacillus halodurans # 20 228 10 218 218 220 61.0 2e-57 MNNRGLASFFDFSQIDISKLQEKTIETLYMTGISIIVVAILGLILGLLLFETSGRKGILS RLLYWLVAIFVNIFRSIPFIILIVLLIPFTKIILGSMSGVKGSLPALIISAAPFYARMVE IAFREVDKGVIEAAKAMGANRFQIIWKVLLPESLPALVSGLTVTTISLVGYTAMAAAIGA GGLGSLAYQDGFQRGQNTVTLVATICILIIVFAIQWLGDTVAKKIDKR >gi|307679309|gb|GL456418.1| GENE 237 238840 - 239658 1120 272 aa, chain + ## HITS:1 COG:lin2512 KEGG:ns NR:ns ## COG: lin2512 COG1464 # Protein_GI_number: 16801574 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Listeria innocua # 3 272 2 276 276 280 53.0 2e-75 MKKRTLWSVITVAVAVLVLGACGNKKSDDSVLKVGASPVPHAEILEHVKPLLEKEGVKLE VTTYTDYVLPNKALESGDIDANYFQHVPFFNEAVKENDYDFVNAGAIHLEPVGLYSKKYK SLQEIPDDSTIYVSSSVSDWPRVLTILEDAGLITLKEGVDRTTATFDDIDKNTKKLKFNH ESDPAIMTTLYDNEEGAAVLINSNFAVDQGLNPKKDAIALEKESSPYANIIAVRKEDENN ENVKKLVKVLRSKEVQDWITKKWNGAIVPVNE >gi|307679309|gb|GL456418.1| GENE 238 240006 - 240821 743 271 aa, chain + ## HITS:1 COG:lin1352 KEGG:ns NR:ns ## COG: lin1352 COG0020 # Protein_GI_number: 16800420 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Listeria innocua # 26 259 23 252 252 316 63.0 3e-86 MLRFFPQKNKYVEEASQYAFDKEGQIPQHIAIIMDGNGRWAQNRRLPRIAGHKEGMDTVK KITKHASHLGVKVLTLYAFSTENWKRPTDEVNFLMQLPVDFFDTFVPELIKENVKVNVMG YQEFLPSHTQDAVKRAIEQTKDNTGMVLNFALNYGARAELLTAMKQIAAEVSEKAYTADE ITEETIADHLMTGFLPTELRDPELLIRTSGEERISNFLLWQIAYSELFFTKALWPDFSGD TLETAIASFQNRNRRFGGLKETTETEGSDPQ >gi|307679309|gb|GL456418.1| GENE 239 240818 - 241618 943 266 aa, chain + ## HITS:1 COG:SPy1964 KEGG:ns NR:ns ## COG: SPy1964 COG0575 # Protein_GI_number: 15675762 # Func_class: I Lipid transport and metabolism # Function: CDP-diglyceride synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 266 1 264 264 241 52.0 7e-64 MRQRVITAIVALIIFIPIIWYGGFAIEIAAVALAVVGVYELFRMKGLTLLSFEGVLSALG AVFLVIPTIKWLNFLPEMQTNFILFYVTVMLLLGASVISKNTYTIEEAGFPVIVSLYVGM GFQNFISARSAGFEVLLFALFIVWATDIGAYLFGRRFGRHKLMPDVSPNKTIEGALGGIL SAVVVAALFLVFTANKGLFPYPMPVMLVLTVLFSIVGQFGDLVESSIKRHYGVKDSGNIL PGHGGILDRFDSLLFVFPIMHLCGLF >gi|307679309|gb|GL456418.1| GENE 240 242091 - 243260 795 389 aa, chain + ## HITS:1 COG:BS_tagF_2 KEGG:ns NR:ns ## COG: BS_tagF_2 COG1887 # Protein_GI_number: 16080625 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Bacillus subtilis # 9 388 4 385 387 352 45.0 7e-97 MKKFLENSIHQAIKACFFFLGKLPKKKLFIFESFHGKQYSDNPRAIFEYIRDNCPEYQCI WAVKKGYEIPFVEENVPFVKRLSWRWLWLMPRAQYWVFNTRMPAWMYKNQTTIYIQTWHG TPLKKLGLDIETVKMPEHETESYKLEVIQEAKRWDYLISPNAYSTRVFRQAFHYEGEILE IGYPRNDLLVCENKDKIAFSVRNQLGLAANKKIILYAPTWRDDESIRKGAYRFTNHLPVE QLLEIDSSIVILTRLHYLIAESFDISAFGSRVIDVSSYPDINQLYLIADLLITDYSSVMF DFALTKKPMLFFMYDKEKYQNSTRGFYFDPTAILPGKIVTDTDSLVTSVKNVLFSKTEQE QRLYVQFFREFCLENQDATRQLISEILKR >gi|307679309|gb|GL456418.1| GENE 241 243279 - 244745 987 488 aa, chain + ## HITS:1 COG:SA0248 KEGG:ns NR:ns ## COG: SA0248 COG0463 # Protein_GI_number: 15925961 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Staphylococcus aureus N315 # 43 316 3 268 573 93 27.0 8e-19 MEKQKEVQKEYEEYQYMLDTETWKKELSQFKLSSSEKISKNPKVSIIIANYNNAPYLKKM MDSLVQQTIGIEQLQVMFIDDCSTDHSLKVIEPYLERYPNIEIYQLLENTGGAHGPRNVG IVNARGEYSVFLDADDWYDLNALKYLSDLLDDSHDDFAVSGLIQSTDGHLMLKSKPYYVD GSFKNRSIQELPAEFYGWLGPQAIMLRTSLIHNNNLHFVNQRVADDVLFFYEAMRFSKTI TQGERLTTYLNRDADNESLSKSINRTFMLSWLRALSYINQQFPDDLSKERMLARRLEWLI YDFCIRRDTGYPFSKKRLQDFKVQMDQYLGELNFDPSPYFRSDVRQIIWTFLQTNDIDGL YWFIQCQSIRWVLVNRFGYVSKTERSYYYPRLLKRFPAVRMNAYAEATQREGNTLSLNVY THQKITGFEIKELKNPFETRQRLAFKKISETSYQVELPEKFSNKESRFTIVFDNYLEIGV KDFSKFFA >gi|307679309|gb|GL456418.1| GENE 242 244815 - 247325 2466 836 aa, chain + ## HITS:1 COG:BS_yveT KEGG:ns NR:ns ## COG: BS_yveT COG0463 # Protein_GI_number: 16080481 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Bacillus subtilis # 6 226 5 223 344 136 34.0 2e-31 MENVKVSVIVPVYNVETYLEEALMSLKNQTLKEIEFLIINDGSTDNSQKIIEEIAQDDPR FRVFNVKNGGIGKAFNLGVSEAKGEYIAEFESDDYVALHAYERLYNTAKSHHADVVRCNW VEFSSEEEVERDILWQYPDKYNQLIDLKTTDLIVQVYPWNAIYKKSMIEKENVTWDEEIK SYGDTGLFWKINSASQNVIFIKDCLYFYRQDNPNSTVNNVATKVPFLFQQFKLIRSNLIE QNKFERYKGYFYKQMFEKYFWAIEKLTHLRDESVYEVIQKVAVDFKQAIEIDQLNDIDFE YIKQFYQIANDPVAYYEDYLKNLYKVSVVMPIHNASKYLRQTLETVCEQSLREIEIILVE NGSTDNTMDIINEFAVKDPRITGISIGKSNPGHARNVGISMARGRYLQFLDADDHFEANL LQDAYYRAYDSATDILLFGMKEKLPNGEVHVVHNPLLTNGGRMSGEEISLDEVTPYLYDK LFLLEYIKENNLVNLEQFVGEDAYFTYTALLGTEKIVALNKYLLTRIVRQDGLMSTYGMN YRDEFNLHDKMLEYLKQHAPNRIEAYRLKIINTLNWFIFDMNRVDQAFKERFYQELKEKY IQQLGLDLVKKEKYSNDPEQVERITRIQNILQYNLEIYQNIYKDFGMKKTFIIPNVHIQE RGGKVIFGQEKAQGNGTAIEMFSIIIADNDTSNASGVIDFVYMGDNTKIIHDSLLVSLLI KKEGTTLKSIVLQAEWEKGYTLLQENMYYTFVDNVFTIWAGYTQKYAAFDYNVRILTSRE GETHFSVVRQNQGYIQDTMTSIGNELTPINKIEGNEPTTIKKAVSKSLKKAKGLLK >gi|307679309|gb|GL456418.1| GENE 243 247349 - 248200 702 283 aa, chain + ## HITS:1 COG:no KEGG:EF2490 NR:ns ## KEGG: EF2490 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 283 1 283 283 555 100.0 1e-157 MNDLWNFLDNHPEEKELIKAKALQGYTVDGILNDQLNFVALDTLSIGLEKFGNIHYSIQI PEFNELLSKKMVVLFVPADGVGHSGAKERYFGLRQWNTLSQSVRKNTIILRIADVGFVSG SYYTLFEQEILDLIEAKKTEFGLKHQDIIFYGNSRGGTGALLLGITGNYKTVSVDPVIDR EPWVNSADGRIDRQLMFDFVEMDFSNRIKDKMEQSNYELENITVIASEANKKMYEKIYPL SNGFTLKKLELMIDSENTIGIHGLTIMESIHLQLALINNYLFD >gi|307679309|gb|GL456418.1| GENE 244 248227 - 250680 2428 817 aa, chain + ## HITS:1 COG:SPy1101 KEGG:ns NR:ns ## COG: SPy1101 COG0812 # Protein_GI_number: 15675084 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Streptococcus pyogenes M1 GAS # 518 809 1 295 295 220 41.0 8e-57 MKKAAIMGWWYNQNYGSILTYYALNKYVQNKGYETVMIDGPLGYKNRSNFRAWMPLAYNF FKKNNMPYTEQLTKETLPTLNDLENLDTFILGSDQMWNPWNGWVDDDDFLDFVYPRNKTI AYSVSLGKADTSKYDPKWVANRKKDITQFNHVSMREDFSVQIMKDIFQEEVIQALDPTYL VERSEYDSLADQATFKRQESGDYMAVFFLDINKEKVRVALAIAEKLGLKLVVLPNPLKGR ELAKKTFPNTVEYVSEDTPENFLSVYREAKYIITDSFHGTVFATIFQKPFSIFYNEQRGI DRFNSLMNLFELGETRRVYEQNTKQEIEENKNISLALDYQKTAGKIAREKEISDKWLTDA LTSKFSPDEDEVYDEFRRYIINKPLDFYRAKTTVPISAAIVLSPNGTIKNSNPNESFWKL TDKELIFMNNHREVTTRFNREKFKGKETFSPFRIVGKYVKDEKIEHVMYLHPIQKPKPKP KQGTEKKALAIPENLLTRKQLIMKIVQNERIRSWKQDLLEELPDLELFVGRELKEYASNF VGGPADLLIFPKTIEEVALIVKYAKNNQIPLTVIGKGSNILVRDGGIRGITLNMTALNYR KITGNVLTVSAGASLIETSYYLLEHLKCGLEWADNIPGTIGGAVYMNAGTVKDINSMFLE ATIVDENGEIKVLNKEDVQFSHRYSSFMDHPEWIILETKLQISEGNLENMVNDMVGTVEI RERMHPLTHPNHGSTFTWGRAPRLIQQAGLVGTRIGGVKVSEKHPGFFINVEQASAQDYE ALIYLVIAKVYEFSGFLLKPEVRILGANMWEASLTFK >gi|307679309|gb|GL456418.1| GENE 245 250698 - 251096 411 132 aa, chain + ## HITS:1 COG:no KEGG:EF2488 NR:ns ## KEGG: EF2488 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 132 1 132 132 218 100.0 7e-56 MKKIITIIVSLAIGIGCGFWSGYYISKKYSENQETTISKSTNSEQPLITNGEYQVTANWD WKTLVVKDNVWTLDGKRIYDVSTTNDNIVILKGKNLKSLVVYKIEKDNEKINLYSYTKEG VGKKVLATLVKK >gi|307679309|gb|GL456418.1| GENE 246 251155 - 252294 1395 379 aa, chain + ## HITS:1 COG:glf KEGG:ns NR:ns ## COG: glf COG0562 # Protein_GI_number: 16129976 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-galactopyranose mutase # Organism: Escherichia coli K12 # 8 370 2 360 367 426 60.0 1e-119 MKYNTKNYDYLIVGSGPFGATFACEAAKRGKKVLVIEKRAHIGGNMYTHKENGINVHDYG AHIFHTDNKEVWSYVNQLTEFNGYINQVVANYKGELYNLPFNMNTFYQMWGVKTPAEAQA KISEQREAAGIKGAPKNLEEQAIRLIGTDIYEKLIKGYTEKQWGRKATELPSFIIRRLPT RFTFDNNYFNHRYQGVPVDGYTAMFDKLLESELIDIQLNKDFLAEKETYLSEFPKIVYTG MIDAFFDYSYGELEYRSVRFENETVDSNNAQGNAVINYTDAETPYTRIMEWRHFDQQADE NKTILTKEYPQDWDRSKEAYYPVNDEKNSLLFRKYKEKANAQEKVIFGGRLANYQYYDMD QVFGAALKAVAKEFGEMAN >gi|307679309|gb|GL456418.1| GENE 247 252320 - 253663 1108 447 aa, chain + ## HITS:1 COG:L137446_1 KEGG:ns NR:ns ## COG: L137446_1 COG1134 # Protein_GI_number: 15672897 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate transport system, ATPase component # Organism: Lactococcus lactis # 4 340 5 341 350 311 46.0 2e-84 MEKELKVRTKLLTKEYSLAQTRIDKLKTLFSIFQNKVPTFWALKGVSLDVYSGETIGIIG LNGSGKSTLSNIISGITPQTSGELEINGEVSIISIGAGLNNNLTGRENIRMKCLMLGEKN KEIDAKIDDIIEFSELGVFIDQPVKTYSSGMRAKLGFSIAVHQNPDILVIDEALSVGDQT FYNKGLKKMLAFKEQGKTIFFVSHSIQQVEQICDRVAWMHYGDLRAFGETKHILKEYRAF LHRYNHFTEPQKESYQRDGKAKQRNFSLEQLQETILEKANQQVGSRRTTKEVIKFTTKNK IGDKMTLGTKSLLILLLCMIFYVSLTFVKGISLTTAFIHPAETIQRIFVPEKVAGKDTNA VKTTKAKPASTKESSQQEEVQSSSTNASENNNGEQAVSTYTVEVGDSVSLIAENHGLTIE QLQTLNPEIIEVPIYPGQVLKLKEVTE >gi|307679309|gb|GL456418.1| GENE 248 253663 - 254475 678 270 aa, chain + ## HITS:1 COG:lin1062 KEGG:ns NR:ns ## COG: lin1062 COG1682 # Protein_GI_number: 16800131 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate export systems, permease component # Organism: Listeria innocua # 1 270 1 267 267 219 46.0 3e-57 MREVKLILAEQFSYLGVAQRIAKYSNKALYQSHILGNLWQILSPLIQLGVYYFAFGIALG GARTVKGGVSYIAWLMVGLSTWIFLSTVTKQASSSVYMQVGMVSRMKFPISILPMVKIFS ELPSYFAFTTLAAIVSISTGEKISIYWIQLPYYIVAMIIFLYSFSLINSTIAALIRDYQI FLNSIIQVLMYMSGVFWDLSTKNLPSWLSKILMLNPYAYIINGFRDTFFYKRWFFEDKPQ LIVFWLTTLVIFIVGAHLHVKFRSKFVDYM >gi|307679309|gb|GL456418.1| GENE 249 255138 - 255788 800 216 aa, chain + ## HITS:1 COG:AF0720 KEGG:ns NR:ns ## COG: AF0720 COG2102 # Protein_GI_number: 11498327 # Func_class: R General function prediction only # Function: Predicted ATPases of PP-loop superfamily # Organism: Archaeoglobus fulgidus # 8 215 12 210 214 115 32.0 8e-26 MKKFCLSYSSGKDCLLAMDRLVQAGNQPVALVTTLSDEINRSWFHGIPISVLEAAAEALD LPLVISHNNETNYTEKVVEALQETKKLGAETVCFGDIDIEQNGAWDRQVALSAGLEPQLP LWQENREALVKEFLAKGYTAIIKTVSKEAGIPIKFLGEPLDETFITYLKEHQLDICGENG EYHTLVIDGPLFKKRLNYYASGIYESPYAYSLIIDA >gi|307679309|gb|GL456418.1| GENE 250 255876 - 256103 429 75 aa, chain + ## HITS:1 COG:no KEGG:EF2483 NR:ns ## KEGG: EF2483 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 75 1 75 75 115 100.0 8e-25 MEETVFFNLGNALASKRDQKELIKEAQIAKDTRKIPGKLIIVEDEENGTHILFELADQTE PSAETKEFKVKKVID >gi|307679309|gb|GL456418.1| GENE 251 256251 - 256982 606 243 aa, chain + ## HITS:1 COG:SA0513 KEGG:ns NR:ns ## COG: SA0513 COG0546 # Protein_GI_number: 15926233 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Staphylococcus aureus N315 # 6 205 4 202 227 64 25.0 1e-10 MENRGILFDKDGTCIRFDTLWQAGLQACFETLSMLAPHHSAEIKKILAIQEQRFLQKHLL DEVLYQELYQELAQFEELVEQGISSRWLEQFFYDYLRKNLKKIEPIGDLKQLFLELKRKN YKIGLATSDTLPATMLIMEYLGLTEMFDFIATGDRYLPKPDADMLQAFCQSCQLKATEVI MVGDSLVDVFMGTCHGKAGIGVLTGNCQSTDFEKFEVAYFRDIHEIPYQELWGNTKKKKI YYV >gi|307679309|gb|GL456418.1| GENE 252 257418 - 258014 490 198 aa, chain - ## HITS:1 COG:no KEGG:EF2480 NR:ns ## KEGG: EF2480 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 198 50 247 247 229 98.0 5e-59 MKTEASSSKATNSSKNDTKKESSEKKSEDKSKDNSDLKATYDKINVGDIMNSSEGGSTED EVKAILGEPASSSTTDIQGISTTTLSWTNVKGGDLLASITVSFSDGKAASKSVSGLKVAK HDKVTADQVNNIATDGSYSEEQARKDLGDPTGITSTNINGEKNDTLIWMKNLDGDLGATV TVSFSNGNAISKSSSGLK >gi|307679309|gb|GL456418.1| GENE 253 258383 - 259183 840 266 aa, chain - ## HITS:1 COG:L188985 KEGG:ns NR:ns ## COG: L188985 COG1512 # Protein_GI_number: 15673333 # Func_class: R General function prediction only # Function: Beta-propeller domains of methanol dehydrogenase type # Organism: Lactococcus lactis # 21 266 22 261 261 123 34.0 3e-28 MKKRLLPIFFLILLAFGLALPVSAAENSIDDDAQLLTPDQINQLKQEIQPLEEKTKASVF IVTTNNNTYGDEQEFADHYLLNKVGKDQNAILFLIDMDLRKVYISTSGNMIDYMTDARID DTLDKVMDGMSQGNYFAAAQTFVQETQAFVDKGVPGGHYRVDSETGKITRYKAITPLEMV IAFAVALILSLVFLGINISKYQLKFSSYQYPFREKTTLNLTSRTDQLTNSFITTRRIPKN NGGMGGGGSTTHSTGGGTFGGGGRSF >gi|307679309|gb|GL456418.1| GENE 254 259180 - 260325 845 381 aa, chain - ## HITS:1 COG:no KEGG:EF2478 NR:ns ## KEGG: EF2478 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 381 1 381 381 712 98.0 0 METTFTHKCPNCGGPLLFNPKDQKFHCEYCLNIYTEEEVTRYEQQQHEAHLENPSTTTDK ENLTFTPEGESSATQQTETTENEAAADAGTMEIFNCPSCGAQIVTDATTAATYCYYCHNP VVLAGRLSGEFLPENVLPFTIEKDEAIEKFLAWTKKKWFIPRDFFSKNQIDKLTGVYFPY WVVDAEVDGQLQATGTSIRIWRVGDIEYTETKRFNVGRSGKLSFKELVKNALSKNVQQKM VEGVQPFLIDQAVPFKSQYLAGFQAEKRDIEYEAIKKHVQQELQDYSESLLRDSASGYTT LTNVRTDISLNQENNHYMLLPIWLVTYRSQEQSKKVYYYAMNGQTGKVSGVLPISYTRLG LATLGIFAGLLALFLLGGYFL >gi|307679309|gb|GL456418.1| GENE 255 260429 - 261661 1275 410 aa, chain - ## HITS:1 COG:L186490 KEGG:ns NR:ns ## COG: L186490 COG4260 # Protein_GI_number: 15673331 # Func_class: S Function unknown # Function: Putative virion core protein (lumpy skin disease virus) # Organism: Lactococcus lactis # 15 405 1 384 389 566 69.0 1e-161 MGLIKAATSSVGGGLADQWLEVIEPDNMGDTTVMTKGVFVRKDDKRGSNRKGTDDVLTDG SVVHVYPNMMMLLVDGGKIIDYTAEEGYYTVKNDSAPSMFNGSLKDAIAETFSRFKFGGV TPQKQQVFYINLQEIKGIKFGTPAPLNYFDNFYNAELFLRAHGNYSIKITDPLLFYTNAI PKNQTQVDINDINEQYLAEFITALQAAINQMSADGQRISYVPSKSVELSKYMQTALDEDW RTNRGMEIVSVAVASISYTDDSTKLINMRNEGAMLSDPGVREGYVQGSLARGMEAAGKNE GGAMSGFMGVGMGMNANGNYFAQASQTNQQQMQEKQNQQNAQGATDTWTCPQCGTENTGK FCSNCGTPKPTNEKPKLEMKCSECSEIVDLSNGIPKFCPHCGKPFQGVPL >gi|307679309|gb|GL456418.1| GENE 256 261869 - 263911 2384 680 aa, chain + ## HITS:1 COG:lin0461 KEGG:ns NR:ns ## COG: lin0461 COG0768 # Protein_GI_number: 16799537 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Listeria innocua # 1 675 1 676 678 569 48.0 1e-162 MERSNRNKKSSKKPLILGVSALVLIAAAGGGYYAYSQWQAKQELAEAKKTATTFLNVLSK QEFDKLPSVVQEASLKKNGYDTKSVVEKYQAIYSGIQAEGVKASDVQVKKAKDNQYTFTY KLSMSTPLGEMKDLSYQSSIAKKGDTYQIAWKPSLIFPDMSGNDKISIQVDNAKRGEIVD RNGSGLAINKVFDEVGVVPGKLGSGAEKTANIKAFSDKFGVSVDEINQKLSQGWVQADSF VPITVASEPVTELPTGAATKDTESRYYPLGEAAAQLIGYTGTITAEDIEKNPELSSTGVI GKTGLERAFDKELRGQDGGSLVILDDKENVKKALQTKEKKDGQTIKLTIDSGVQQQAFAI FDKRPGSAVITDPQKGDLLATVSSPSYDPNKMANGISQKEYDAYNNNKDLPFTARFATGY APGSTFKTITGAIGLDAGTLKPDEELEINGLKWQKDKSWGGYFATRVKEASPVNLRTALV NSDNIYFAQQTLRMGEDKFRAGLNKFIFGEELDLPIAMTPAQISNEDKFNSEILLADTGY GQGQLLISPIQQATMYSVFQNNGTLVYPKLVLDKETKKKDNVISANAANTIATDLLGSVE DPSGYVYNMYNPNFSLAAKTGTAEIKDKQDTDGKENSFLLTLDRSNNKFLTMIMVENSGE NGSATDISKPLIDYLEATIK >gi|307679309|gb|GL456418.1| GENE 257 264027 - 264746 288 239 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase [Lactobacillus jensenii 269-3] # 43 226 2 185 380 115 40 1e-54 MRILAIDTSNQTLSIAVCENQKILGSYTATVKRNHSLTLMPAIDYLMSQLNLAPTAIDRF VVAEGPGSYTGLRLGVTTAKTLAYTLKKELVGISSLQALAANCVGQTGLIVPLFDARRKN VYAGAYRFVDGVWQNELPDQHISLRELLEQLKNEPNLFFVGEDVEKFTEEIAQIIPHGEI CDVPQWQIPNAAVLAALGSVAEPVENVHGFLPAYLKKVEAEENWLKTHTPNGESYVEKL >gi|307679309|gb|GL456418.1| GENE 258 264718 - 265272 291 184 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|58336726|ref|YP_193311.1| ribosomal protein ala-acetyltransferase [Lactobacillus acidophilus NCFM] # 5 182 1 179 190 116 36 1e-24 MEKAMWKNFNFVTKYFTKRRQRYITKTIAMNQQEFQLREITYQDIKDLLAIEREVYAGEL PWTMSAFMAELGSKAPHLYLLAAINGKTVGFIGCRIQGTDAHITNVAVHTAYQGLGLGRS LIEETRIFAKKNRCETLSLEVRMSNVKAQRLYRKIGFVSQTVKKGYYDENNEDALEMIID LKEE >gi|307679309|gb|GL456418.1| GENE 259 265280 - 265744 190 154 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119946836|ref|YP_944516.1| ribosomal-protein-alanine acetyltransferase [Psychromonas ingrahamii 37] # 1 149 9 160 162 77 27 5e-13 MLVTKKEISVANIGEELWRFSNSSYTTGSPWTETQFAEDFAQENSEYLFLVENGQWLGYI AYHFILDEAEISHVVVNGQKQHQGIGCQLMKAFKEYVKSRNITQIFLEVRESNTLAQKLY EKTGFRKVAVRKNYYKEPQENAFVMCAKLRKEAQ >gi|307679309|gb|GL456418.1| GENE 260 265741 - 266787 715 348 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229232313|ref|ZP_04356740.1| (SSU ribosomal protein S18P)-alanine acetyltransferase [Cryptobacterium curtum DSM 15641] # 10 319 518 834 860 280 47 2e-80 MTIFTKERKLLLAVESSCDETSVAVIEDGDKILSNIVASQIKSHQRFGGVVPEVASRHHV EQVTICIEEALTEAKVTPEELSGVAVTYGPGLVGALLIGLSAAKAFAWAHQLPLIPVNHM AGHIYAARFVAPLEFPLMALLVSGGHTELVYMKEDGSFEIVGETRDDAAGEAYDKVGRVL GLPYPSGKEIDALAHEGTDTYQFPRAMLKEDNYDFSFSGLKSAFINTVHNAEQRGEALST KDLAASFQASVVEVLVTKTIRACQEYPVKQLLIAGGVAANQGLREAMRHAISEQLPEVTL LIPPLKLCGDNAAMIGAAAFIEAEKNHFASYNLNAEPGVSFMTISEEG >gi|307679309|gb|GL456418.1| GENE 261 267106 - 268797 2136 563 aa, chain + ## HITS:1 COG:SPy2151 KEGG:ns NR:ns ## COG: SPy2151 COG0018 # Protein_GI_number: 15675893 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Arginyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 563 1 563 563 724 62.0 0 MNNKEIVAKALHDVLNEELTMDQIEQLLENPKSVDHGDVAFPAFSLAKIYRKAPQQIAAE LAEKIDGTNFEKIEVVGPYLNFFMNKEAVSQAVIGAVVKEKNNYGNSTFGNNGNVPIDMS SPNIAKPISMGHLRSTVIGNSIAFILEKIGYQPIRINHLGDWGTQFGKLIVAYKKWGSEE AVRQQPINELLRLYVQFHEEAEEKPELEDEARAWFKKLEEGDQEANELWKWFRSESLKEF DKIYSMLEVEFDSYNGEAFYNDKMDEIVTLLEEKHLLTENQGAEIVDLTEYNLNPALIRK SDGATLYITRDLAAALYRKRTYDFAKSLYVVGNEQSNHFKQLKAVLKELGFEWSDDMEHI PFGLITQGGKKLSTRKGKIVLLEEVLNEAVTLAGNQINEKNPDLANREEVAKQVGVGAVI FHDLKNDRLNNFDFVLDEVVRFEGETGPYVQYTHARAMSILRKANFTPDATQRYALNDKD SWEVVKLLQKFPETVMQAAEKYEPSVIAKHSIHLAQAFNKYYAHVRILDEDAQKEARLAL VYAVATVLKEDLRLLGLHAPEEM >gi|307679309|gb|GL456418.1| GENE 262 268938 - 269453 596 171 aa, chain + ## HITS:1 COG:SPy0357 KEGG:ns NR:ns ## COG: SPy0357 COG1418 # Protein_GI_number: 15674508 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Streptococcus pyogenes M1 GAS # 10 162 3 150 166 179 64.0 3e-45 MAPNYMTEKWREDEEYLSYVEDLLATEEVQKLAEYTQHMHSTRLEHSISVSYHSYKLAKR WNGNARATARAGLLHDLFYYDWRTTKFDEGSHAYVHPRIAAKNAEKITELSDLERDIIIK HMWGATIAPPKYKESYIVTFVDKYCAVKEAALPMTTAMKTKWRQYFGQQSI >gi|307679309|gb|GL456418.1| GENE 263 269534 - 269827 231 97 aa, chain - ## HITS:1 COG:no KEGG:EF2469 NR:ns ## KEGG: EF2469 # Name: not_defined # Def: Cro/CI family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 97 11 107 107 173 98.0 2e-42 MEKNLTLEQVGNFVGVGKSTVRKWETGMIENMGRDKIVALSKVLDVSPLEILGIPETEET PFVVPTNIMNIYKQLTTENQEAVFRYAQKKLTEQNYF >gi|307679309|gb|GL456418.1| GENE 264 270035 - 270283 274 82 aa, chain + ## HITS:1 COG:no KEGG:EF2467 NR:ns ## KEGG: EF2467 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 78 1 78 92 116 87.0 4e-25 MESNLIHSKLKLKGKNVEWLASEMTAAGQPISASTIYKKLKGEVVFKATDIKLISKLLDL ESEEIMVIFFYELVSKKTRKGC >gi|307679309|gb|GL456418.1| GENE 265 270494 - 271759 1237 421 aa, chain + ## HITS:1 COG:RSc1803 KEGG:ns NR:ns ## COG: RSc1803 COG0038 # Protein_GI_number: 17546522 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Ralstonia solanacearum # 14 400 4 390 431 281 44.0 2e-75 MKKETKQLLSISGYMAKWLLITAIIGLFMGALSAFFLKSLTYVTDVRLANPWLLFILPIS GVVFTYFYTRFGKNASRGNNLVIEQGNGGEEDIPLRLIPLTLFGTITTHLFGGSVGREGT AVQMGGAIANAVGKVFKLSALEREVIIISGISAGFSSVFGTPLAGTVFGLEVLAIGKVRA EALFPSFFAGLFANFVTESFGVTHTHYPMGKIPTWSVDLFVKLFLASICFGLAGWVFSRS IVFLKKTYANWFANVYLRAFLGASIVVLFVVVLNNQRYLGLSLPLLEDAFAGNAQPFDFI GKLFFTVLSLGAGFQGGEVTPLFEIGATLGSSLAPLLHLSIPFLAGLGFIGVFSGATNTP IACFIMGIELFGSEAAVYFFMVCLISFMCSGNSGIYASQQSLYRKGTAEYPLFNVLKNRR K >gi|307679309|gb|GL456418.1| GENE 266 271809 - 272087 414 92 aa, chain + ## HITS:1 COG:SP1404 KEGG:ns NR:ns ## COG: SP1404 COG4476 # Protein_GI_number: 15901258 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 2 90 3 91 92 92 55.0 2e-19 MKDYQYPLDLDWTTEEMVIVTNMWTAVEQANETGLPVDKFLTTYQQFKTVVKSIGEEKRL GREFENASGYSLYRTLQQAKKQGSGKLKLGDD >gi|307679309|gb|GL456418.1| GENE 267 272088 - 272870 1030 260 aa, chain + ## HITS:1 COG:BS_yktC KEGG:ns NR:ns ## COG: BS_yktC COG0483 # Protein_GI_number: 16078531 # Func_class: G Carbohydrate transport and metabolism # Function: Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family # Organism: Bacillus subtilis # 1 257 1 262 265 180 37.0 3e-45 MTETQKFVQTIQSWLFEAADVIRMNLESELTVQQKNGRTDLVTNMDEQTQEFLMNKIQTN FPEDQILGEEKGYNTLKSFAGRVWIIDPIDGTMNFVMERENFCIMLAVYEDGIGKLGFIY DVMREELYWGGKGLGVYRNNQLLKAPTMKALADGLWGMNAYMHGKNIHHATEIGQASMGV RISGCAGLEIIAMLKGNHHGYLSNLSPWDYAAGLVLLEEFGFKYSGITGKPLTFAGREYF IAATPETYDEVFTRYLNESE >gi|307679309|gb|GL456418.1| GENE 268 273091 - 274926 2182 611 aa, chain + ## HITS:1 COG:SP0681 KEGG:ns NR:ns ## COG: SP0681 COG1217 # Protein_GI_number: 15900582 # Func_class: T Signal transduction mechanisms # Function: Predicted membrane GTPase involved in stress response # Organism: Streptococcus pneumoniae TIGR4 # 2 611 3 613 613 1019 86.0 0 MKYRDDIRNVAIIAHVDHGKTTLVDELLKQSDTLDGHTQLQERAMDSNALESERGITILA KNTAVDYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALE QKVTPIVVVNKIDKPSARPEHVVDEVLELFIELGADDDQLDFPVVYASALNGTSSESDDP ADQEPTMAPIFDKIIEHVPAPVDNSDEPLQFQVSLLDYNDYVGRIGIGRVFRGTMKVGDQ VALMKLDGSVKNFRVTKILGFFGLQRVEIDEAKAGDLIAVSGMEDIFVGETVVDVHNQEA LPILHIDEPTLQMTFLVNNSPFAGREGKYITARKIEERLMAELQTDVSLRVDPIGPDSWT VSGRGELHLSILIENMRREGYELQVSRPEVIEREIDGVKCEPFERVQIDTPEEYMGSVIE SLSLRKGEMQDMINAGNGQMRLIFLAPARGLIGYSTEFLSMTRGYGIMNHTFDQYLPMIQ GTIGGRHQGALVSIDTGKATTYSIMSIEERGTVFVEPTTEVYEGMIVGENNRDNDLTVNI TKAKQMTNVRSATKDQTSVIKKPKKLTLEESLEFLNEDEYCEVTPESIRLRKQILNKNER EKASKKKKKAE >gi|307679309|gb|GL456418.1| GENE 269 275243 - 277033 1910 596 aa, chain + ## HITS:1 COG:lin2900 KEGG:ns NR:ns ## COG: lin2900 COG0514 # Protein_GI_number: 16801959 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA helicase # Organism: Listeria innocua # 5 583 6 586 590 711 58.0 0 MSALQELLKDTFGYDDFRPGQETIIRHVLRQENVLGIMPTGGGKSICYQLPALLLDNLTL VISPLISLMKDQVDALNLMGIPATYINSTISYQEMNHRIQLAVNKEVKLLYVAPERLESY DFQQMLTHVPIDLLAVDEAHCISQWGHDFRPSYLRLAEIIDQFQQQPTVIALTATATPQV AEDIVKQLRIPSENEIKTGFARENLSFQVVKDQNRDVFLLEYLKMNTGQSGIIYASTRKE VERIYHLLESKKIAAGMYHGGMSEQLRSENQEAFLYDQVQVMVATNAFGMGINKSNVRFV IHAQVPGNIESYYQEAGRAGRDGLPSDAVLMFAPQDLQIQQYFIEQFEMTIDYKQKEYLK LREMSQYANAQMCLQKYILRYFGEEGTDCGRCSNCLDNRELVDITVDAQKVLSCVKRMGE RFGKGLVGKVLTGSKDQKIDQWHFDRLPTYGLMKGRTQKEVTQLIDYLTAERYLIPSDGQ FPLLSVSTEGVQVLLGERKVFRKEDQKVRKVAVDDALFERLRELRMDMAQEAGVPPYVVF SDSTLKEMCEKLPQTTIQLLQIKGVGQNKLDKYGTAFLEVIKEYQETKNDIVCYFI >gi|307679309|gb|GL456418.1| GENE 270 277238 - 277543 430 101 aa, chain + ## HITS:1 COG:lin1058 KEGG:ns NR:ns ## COG: lin1058 COG4838 # Protein_GI_number: 16800127 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 10 84 12 86 93 77 53.0 6e-15 MDEGISKKFAIQLLEDDAERIKMLIRNQKNSLCISQCKAFEEVVDTQMYGFSRQVTYATR LGILTNDEGHRLLSDLERELNQLYTDVYEETQEKNEIGKEG >gi|307679309|gb|GL456418.1| GENE 271 277547 - 278755 1393 402 aa, chain + ## HITS:1 COG:SP1067 KEGG:ns NR:ns ## COG: SP1067 COG0772 # Protein_GI_number: 15900936 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 4 393 2 398 409 342 48.0 6e-94 MPNKVKKRHLLDYSIFIPYLILSIVGLIMVYSSTSALQVMKGFSPTSFVINQVAFWVVGL VAMFFIYKMKTSVFQNRSFIMFAIAVITVMVLAVRIPGIGKEINGARGWIEIGGFSMQPA EYLKIMVVWYLSYILARRQKTINGGMDQFKQAAGRPLMLVFVLIALVAIQPDFGNAAILT LITIVMVLASGINYMYTYLVGGLGILGSITAIQLLIMSKGKIFPARYQYIYNRFAVFKNP FLDERNLGHQLANSYYAISNGGWFGKGLGNSVQKKGFLPEAHTDFIFAITLEELGIIGGL AILGLLMFMIARIILVGVRSKKPFNSLMCIGIGTMLLIQVFINVGGITGIIPLTGITFPF LSQGGNSLLIISIAVAFVLNISADETRQKLENEYYLSLEQNQ >gi|307679309|gb|GL456418.1| GENE 272 278788 - 282216 4014 1142 aa, chain + ## HITS:1 COG:L63652 KEGG:ns NR:ns ## COG: L63652 COG1038 # Protein_GI_number: 15672651 # Func_class: C Energy production and conversion # Function: Pyruvate carboxylase # Organism: Lactococcus lactis # 1 1139 1 1136 1137 1653 70.0 0 MKKVLVANRGEIAIRIFRACTELDIQTVAIYAAEDEYSVHRFKADEAYLVGKGKKPIEAY LDIENIIQIAKKSGADAIHPGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAK EAAVAAGIASIPGSDGPVATVEEVAAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREG YERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKVVE VAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLVEGDQFYFIEVNPRVQVEHTITE MITDIDIVISQLQIAQGLDLHKDMHLPKQNELTLKGAAIQCRITTEDPLNQFMPDTGKID TYRSPGGFGVRLDVGNAYSGYAVTPYFDSLLVKVCTHGFSFEQAISKMQRCLKEFRIRGV KTNIPFLQNVVSYPAFQSGEAKTTFIDNTPELFEFPRMRDRGNKTMKYIGEVTVNGFPGI ERTEKKYFEAPRVPTDIEVPEKVITAKNILDAQGATAVIDWVKNQESVLMTDTTFRDAHQ SLLATRVRTQDFKAIAGLTDAALPELFSSEMWGGATFDVAYRFLTEDPWQRLRKIRQLMP NTLLQMLFRGSNAVGYQNYPDNVIEEFIKESARQGVDVFRIFDSLNWISQMEKSIQVVRD TGKIAEAAICYTGDINDPARAKYNVQYYLDMAKELENLGAQIIAIKDMAGLLKPQAAYRL ISELKAATDLPIHLHTHDTSGNGIITYSAATKAGVDIVDVAMSAMSGATSQPSMNSLYYA LVNGERTPTINIDNAQKINHYWEDVRMYYQPFENGLNAPQTEVYMHEMPGGQYSNLQQQA KAVGLGHRWDEIKKMYHTVNLMFGDIVKVTPSSKVVGDMALFMVQNHLTEQDVYARGEEL SFPESVVTFFQGDLGQPVGGFPKELQRIILKGRPAFTERPGDLAAPVDFAKVQEELAEKI GYQPKLEEVLSYLMYPQVFLEYRQKYETFGDITLLDTPTFFNGIRQGETLEVQIERGKTL IIRLDEIGEPDIDGNRVLFFNLNGQRREVLVKDASIKSAVQVKQKAEPTNKEQIGATMSG SVLQVLVKRGDKVEKGQPLLITEAMKMETTIEARFAGTVDHIYVEEGEAISSGDLLLEVK EK >gi|307679309|gb|GL456418.1| GENE 273 282233 - 283357 1008 374 aa, chain + ## HITS:1 COG:lin2162 KEGG:ns NR:ns ## COG: lin2162 COG2340 # Protein_GI_number: 16801228 # Func_class: S Function unknown # Function: Uncharacterized protein with SCP/PR1 domains # Organism: Listeria innocua # 1 236 1 246 351 90 26.0 6e-18 MKRFWAFTAVFLTVLLIGYLEPVFFPAEKPTETAQSGRLSSAHTAVPHEELPASGYAAYI GKDVETFIRQFGNPKEKIKTGRTYELWTFGLTMNDYLEVNVRENKVIAIKAFNNDKMIEP FKIDMKLADLSDLMTIYSNFAFNFHHEAYDVELMEEDMNYRPLVAFDNGSFAVLFFNQRT GGLMAVNYVNKETLLTEMPYQLNEGSPLPVDITQSMTFDPVQSNQAIYVMNLVKQQENQA AFSVSTQSQKDAQTLYQTLANHTPTILSANRQAELLQTREEHTAIHPFHLTKDEFSLLVK TSKLSLREPAGIFQEPVYDSTFTILSWFSDPQYDSYFAESETTELGVAFSNEGVLVLLEK RPENRQITESSEKL >gi|307679309|gb|GL456418.1| GENE 274 283354 - 283788 222 144 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764796|ref|ZP_02171849.1| ribosomal protein S17 [Bacillus selenitireducens MLS10] # 7 141 12 143 146 90 35 1e-16 MIVTEHLFAIEDQTECLISALLESDAVQNYKETKKAMYASAEVAQLQKAFLEAKSAFERV EAYGIHAPDFREKQRALRKAKRALDLNEIVANYRFAETNVQTLLDTIGLKIAQLISEDIK VDAGNPFFERGKKHSGCGGSCHAS >gi|307679309|gb|GL456418.1| GENE 275 283778 - 284128 444 116 aa, chain + ## HITS:1 COG:BH2594 KEGG:ns NR:ns ## COG: BH2594 COG4471 # Protein_GI_number: 15615157 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 14 91 6 83 92 69 44.0 1e-12 MQAKEEKEFTLQERRCLIVWVYTLKPLKQLRRYGLIHYVSRKMKYVVIYMNEENIESNME KINQLHFVRSVDKSYRPDIEMNFAEKIGTKAAYQEQEDDGYVVEELSTEIRLAENV >gi|307679309|gb|GL456418.1| GENE 276 284227 - 284781 707 184 aa, chain + ## HITS:1 COG:L22498 KEGG:ns NR:ns ## COG: L22498 COG0742 # Protein_GI_number: 15674145 # Func_class: L Replication, recombination and repair # Function: N6-adenine-specific methylase # Organism: Lactococcus lactis # 1 180 10 186 188 214 61.0 5e-56 MRVISGEYGGRRLKALDGDNTRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAV SRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD PPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKTVKLPETIGTLEKTRETVYGITQVTIY RQEA >gi|307679309|gb|GL456418.1| GENE 277 284783 - 285274 334 163 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 [Bacillus selenitireducens MLS10] # 2 158 3 158 164 133 43 1e-29 MRKIALFPGSFDPMTNGHLNLIERSAKLFDEVIIGVFINTSKQTLFTPEEKKYLIEEATK EMPNVRVIMQETQLTVESAKSLGANFLIRGIRNVKDYEYEKDIAKMNQHLAPEIETVFLL AEEPYAHVSSSLLKEVLRFGGDVSDYLPPNIYHALKQKKNDWS >gi|307679309|gb|GL456418.1| GENE 278 285279 - 286331 464 350 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 [Bacillus selenitireducens MLS10] # 1 346 1 343 350 183 33 9e-45 MNKKTEKFSFKSLIPMVLALLLIGLFIVPIPYYIEGPGTTENLKVFVTVDGKKDTQSGAF YLTTVGIRSATIFSAIKANFSDFQEVMSKKELMGDSSNSEYNRIQQYYMDSSKNAAIEQA LKLAKVPYEMKFKGVYVLAMEDNSSFKGKIEVGDTVTGVDGKSFKSSEELMNYIKAQKVN QKVTVQFIQDGKAKEATGKLIELPTDKKAGIGIGLTDHTEIDSSIPVSIEAGDIGGPSAG LMFTLQTYEQLSHKDLRKGHEIAGTGTMNSQGIVGRIGGIDKKVVTASENGAEIFFAPDD EITSEMKKVEPKIKSNYQEAQEAAKKIGTKMKIVPVKTVQDALNYLEKLK >gi|307679309|gb|GL456418.1| GENE 279 286427 - 287071 644 214 aa, chain + ## HITS:1 COG:lin1519 KEGG:ns NR:ns ## COG: lin1519 COG1555 # Protein_GI_number: 16800587 # Func_class: L Replication, recombination and repair # Function: DNA uptake protein and related DNA-binding proteins # Organism: Listeria innocua # 67 212 57 199 200 131 47.0 9e-31 MDWLKQLPKKWLLLGSGASIVILITLLVGIYLMVNKEPRVDTTMWEETSLTTTAEVATDA TKERAETMIYVDIKGAVKVPGIYQLKTQQRIWDALALAEGVSEEADTAQVNYAQKVKDQM IIYVPKKGEAVAQSLETLQESAPAQQNQEEKINLNTATEAELQTISGIGAKKAQEIIRFR DEQGPFKTVEELKNVPGIGEKTVERLKDMLTVTG >gi|307679309|gb|GL456418.1| GENE 280 287194 - 287697 456 167 aa, chain + ## HITS:1 COG:BH1334 KEGG:ns NR:ns ## COG: BH1334 COG2131 # Protein_GI_number: 15613897 # Func_class: F Nucleotide transport and metabolism # Function: Deoxycytidylate deaminase # Organism: Bacillus halodurans # 1 141 1 141 188 235 75.0 2e-62 MERIPWDQYFMGQSVLLSLRSTCTRLTVGATIVRDKRIIAGGYNGSVSGGTHCIDEGCYV VDNHCVRTIHAEMNAILQCAKFGVPTEGAEIYVTHFPCLQCTKMILQAGIKKIYYLKDYR NDAYALNLIEQVGATVEKVTLVPKYFAELQWGEEFATLEDNPSSAEE >gi|307679309|gb|GL456418.1| GENE 281 288020 - 289996 1266 658 aa, chain + ## HITS:1 COG:L0317_2 KEGG:ns NR:ns ## COG: L0317_2 COG2333 # Protein_GI_number: 15673754 # Func_class: R General function prediction only # Function: Predicted hydrolase (metallo-beta-lactamase superfamily) # Organism: Lactococcus lactis # 390 642 23 276 282 219 44.0 1e-56 MAFYQLKSVKEKQQWQQLTTTIQATAVGILDSPQGQTNKNGFNYQLFLKNQGIEAILFIE EIGQLRPFFSWRFKEIISGWRKWAMVHIQKNFAETSAMYMNALLLGFRNEEFAEISDKFS ALGILHLFSLSGMHVSFFLRLFRLLMLRIARRTQESYFLWQCGFSLIYAGLTGFSVSVMR ALLQTNLNTFNRRFNWQVPALDCWSLTLLVHLIVQPTLFFSVGGQFSYLLFFVLLFLEQT LVGYSSPFIKNCLGSFLLAVASLPILVQSFYEWPLLGSFLTFLLLPIFERFLLPLLTLSF FLVIIMPARYLAALLEPLFLTMNGLFEWVLVHLNPKLTIGYLNSWIQISLLLLIGLSMIY LADKSKKILFSIGLLIVLINSKYLSPIGIVAMIDVGQGDSLFIQAPFHRKNTLIDTGGRL SFDKEAWRQRKNSRSGAEYSVIPFLKSQGVKRLDEVIITHAHEDHFGDLLAIAQKVPISV LYFPKGAAEANFSFRQVLKQLQKSGTDCRPILAPKRINGPVSFQILSPNKSSIGGNNDSI VFSTQLGGRHFLFTGDLEAEGEEQVLARYPQLKIDILKVGHHGSKTSSTKRFIKQLNPRE ALISAGLNNRFKHPHQETLATLEEQKINYYRTDLQGMIYYQWLPWQGLSKAKFVKEQD >gi|307679309|gb|GL456418.1| GENE 282 290054 - 291082 1145 342 aa, chain + ## HITS:1 COG:BS_yqeN KEGG:ns NR:ns ## COG: BS_yqeN COG1466 # Protein_GI_number: 16079610 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, delta subunit # Organism: Bacillus subtilis # 8 326 7 325 347 243 43.0 5e-64 MELQKALKEVREQKIAPVYLLIGTELYLTELFKTTLMKELLTEEDDQFNFFSFDMEETPL SAAIAEAETIPFFGDYRLVFVENPYFLTAERKTNGVEHDVNLLLNYLESPSPTTVLVFMA SYEKLDERKKITKALKKNATVVDVNPMDEKAIRQYISQTIESEGYTIRSDAFDLLLQLTD LNLSKIMGELQKLYLYALETKTITRGAVQELVPKSLEHNVFDLTNEVLSGNSEKAVQLYE DLLLQGEETIKLNAILLNQIRLFLQTKILAKMGYQQANIADTLKVHPYRVKLALQQVRRF ELSRLERLYDELVENDYRMKTGQMDKELLFQLFILKLTAEAK >gi|307679309|gb|GL456418.1| GENE 283 291134 - 292075 1231 313 aa, chain - ## HITS:1 COG:L157055 KEGG:ns NR:ns ## COG: L157055 COG1893 # Protein_GI_number: 15673305 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate reductase # Organism: Lactococcus lactis # 1 313 1 312 312 398 61.0 1e-111 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIF SPEEIDHQNEQVDLIIALTKAQQLDAMFKAIQPMITEKTYVLCLLNGLGHEDVLEKYVPK ENILVGITMWTAGLEGPGRVKLLGDGEIELENIDPSGKKFALEVVDVFQKAGLNPSYSSN VRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLISEFAAVAEKEAIYLDQA EVYTHIAQTYDPNGIGLHYPSMYQDLIKNHRLTEIDYINGAVWRKGQKYKVATPFCAMLT QLVHGKEELLGAK >gi|307679309|gb|GL456418.1| GENE 284 292265 - 292801 385 178 aa, chain + ## HITS:1 COG:lin2060 KEGG:ns NR:ns ## COG: lin2060 COG1607 # Protein_GI_number: 16801126 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA hydrolase # Organism: Listeria innocua # 3 173 5 172 172 165 49.0 5e-41 MTKEKFCRESRVIQTHRVFPFDLNPFGALFGGKLMSLIDDAASISVSRHCRRGAVTASLD NLNFLKPLKENHSVCVETFVSGVHHKSMEVFVKVVGEDLTTGVRYLAATCFTTFVAIPSH MNPESDFQLAAVVPETAEEKLICSNYETRRQQRLALREETKLFSQHLTTDLPWIDSPL >gi|307679309|gb|GL456418.1| GENE 285 292888 - 293202 509 104 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227519840|ref|ZP_03949889.1| ribosomal protein S20 [Enterococcus faecalis TX0104] # 1 104 1 104 104 200 100 5e-50 MITVELHWLTSVKPKSSEVKQMPNIESAIKRVRTSANANAKNSSQTNAMRTAIKKFEEAV AAGADNVDALYNEAVKAVDMAATKGLIHKNKANRDKIRLSKLAK >gi|307679309|gb|GL456418.1| GENE 286 293371 - 294384 927 337 aa, chain + ## HITS:1 COG:SA0619 KEGG:ns NR:ns ## COG: SA0619 COG0306 # Protein_GI_number: 15926341 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate/sulphate permeases # Organism: Staphylococcus aureus N315 # 17 326 20 324 335 196 39.0 6e-50 MSIALLVTITLVMGVIFVNGWTDAPNAIATAVSTRVLKPNVAIWMAVVMNFLGALVMTFF NAQVAETISNIVSFDANGNASQVALAASLFSIVVWAVAAWYFGIPTSESHALIAGLTGSA MALGGLGAVNGSEWIKVLVGLVVSTVMGFGGGYLIAKLVVKAFSAVPRRKANKFFTVGQA FGAGANAFLHGAQDGQKFMGVFMLVLFYNNLVEKTGGGFVIPLWVMVLCSITMGIGTSVG GMRIIKSVGMDMVKLERYQGFTADLSTAICLFLASAFGIPVSTTHTKTTAIMGVGASKRI SSVDWRIVKEMLIAWILTFPGCGLIAYVMSKLFIAIF >gi|307679309|gb|GL456418.1| GENE 287 294397 - 295020 828 207 aa, chain + ## HITS:1 COG:RSc1312 KEGG:ns NR:ns ## COG: RSc1312 COG1392 # Protein_GI_number: 17546031 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate transport regulator (distant homolog of PhoU) # Organism: Ralstonia solanacearum # 5 206 11 207 208 98 32.0 6e-21 MARKKQFDYFGELNQLATNAYEAAKVLQEIVDNYSLENLVKKSEAIHQLEKENDEIVRKI LNELYISFITPIDREDIVDITDHLDNIIDSINSLSYLLDHLVVEEMIAPALELTAYIVKA TEGVKSATKEFAKFKNSKTLVSLIDEVNTIESQGDKLYSSAMKDLMTNEKDLLKVIKWKD VYDQLERTINDCESAVNIIVGIVIKNT >gi|307679309|gb|GL456418.1| GENE 288 295039 - 295716 552 225 aa, chain + ## HITS:1 COG:lin0339 KEGG:ns NR:ns ## COG: lin0339 COG3394 # Protein_GI_number: 16799416 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 225 1 225 261 348 72.0 4e-96 MVKVIVDADDFGMSEAINHGIIKSYVDGLTTSTLLMPNLPTAEHAVALAKNYPGLFVGQH TNFLLGKPCADPCMIPSLVDEQGNFHRSSYYRQQKQVTFVYEEVRLETIAQLTRFKELTG HYPEHFDCHSIGDEVVDQVFLELAEEYGLHTTLKYSGEKEYPPQQGYFQVTHLLESGALS YIHEGVSVENFLKDDFGLLRMPESAIAEMHFDVGYLDQFVLDNSS >gi|307679309|gb|GL456418.1| GENE 289 295864 - 296694 889 276 aa, chain - ## HITS:1 COG:L58643 KEGG:ns NR:ns ## COG: L58643 COG1968 # Protein_GI_number: 15674174 # Func_class: V Defense mechanisms # Function: Uncharacterized bacitracin resistance protein # Organism: Lactococcus lactis # 8 275 5 279 284 298 60.0 9e-81 MLFANLWKAIILGIIEGITEWLPISSTGHLILVDEFIKLDLSKDFMEMFNVVIQLGAIMA VVILYFHKLNPFSPKKNGEEKKDTWILWSKVLVACLPAAVIGLKFDDYLDAHFYNFLTVS IMLIVYGIAFIIIEKRNKNVAPKCTNLKDFTYKAALIVGAFQVLALIPGTSRSGATILGA ILIGASRFVATEFSFFLGIPVMFGASFLKIFKFLAKGNTFGSEEIIILLIGSIVAFVVSI IAIKFLLNYLKKNDFTVFGWYRVILGAILIGYWLFS >gi|307679309|gb|GL456418.1| GENE 290 296876 - 297370 680 164 aa, chain + ## HITS:1 COG:SP0758_3 KEGG:ns NR:ns ## COG: SP0758_3 COG2190 # Protein_GI_number: 15900652 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIA components # Organism: Streptococcus pneumoniae TIGR4 # 17 159 5 147 151 138 51.0 6e-33 MFGFLKKKNEVVENNTMYAVANGTIIPISEVNDPVFSQKMMGDGYAVVPENGEIYAPIEG EVLSVFQTKHAIGLKMTNGLEILLHMGIDTVELNGAPFTIKVKEGDQVTADTVVAIADLE AIKAAGKGTEMVVIITNMDKVAQFSLEKTGVVTAGTPVGSATAN >gi|307679309|gb|GL456418.1| GENE 291 297524 - 298633 1098 369 aa, chain + ## HITS:1 COG:L143292 KEGG:ns NR:ns ## COG: L143292 COG3589 # Protein_GI_number: 15673111 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 357 1 349 353 327 47.0 2e-89 MYGISVFLGEEITNDTIIYIKKMKALGFDGIFTSLHIPEDDTSLYRQRLTDLGAIAKAEK MKIMVDISGEALKRAGFSFDELEPLIELGVTGLRMDYGITIEQMAHASHKIDIGLNASTI TLEEVAELKAHQADFSRLEAWHNYYPRPETGIGTTFFNEKNRWLKELGLQVFTFVPGDGQ TRGPIFAGLPTLEKHRGQNPFAAAVGLMADPYVDAVYIGDPTISERTMAQFGYYHQTNQF LLEVAPSESRYLKRILGTHTNRLDAARDVLRSELSRTSEMFRKDEIATIESEQTEARPVG TVTIDNEKYGRYMGEIQVTLVDLPKDEKVNTITRIIEKDQTILPLIKAGNQFTLVTEGTI ENEFRKLNN >gi|307679309|gb|GL456418.1| GENE 292 298608 - 299498 1166 296 aa, chain + ## HITS:1 COG:L144334 KEGG:ns NR:ns ## COG: L144334 COG2103 # Protein_GI_number: 15673112 # Func_class: R General function prediction only # Function: Predicted sugar phosphate isomerase # Organism: Lactococcus lactis # 1 296 2 297 297 406 73.0 1e-113 MNLENLTTERRNENTMGLNEMSVKEALQKMNQEDQKVAMAVGQELAAIEPVVEAIIKSFN QGGRLIYMGAGTSGRLGVLDAAECVPTFGVEPEMVQGLIAGGQKAMTVAVEGAEDSKELG RQDLVDLKLSANDIVVGIAASGRTPYVIGGLEYATTVGAATATVACNKNAEISKYAQMPI EVDAGPEFLTGSTRLKSGTAQKLILNMLSTISMIGIGKVYNNLMVDVKPTNEKLVERSKR IIMEATGCSYEVAELKFVEAEENVKLAIVMILTDSTKEEATQKLIDGNQFIKNTLN >gi|307679309|gb|GL456418.1| GENE 293 299521 - 300975 1905 484 aa, chain + ## HITS:1 COG:L145238_2 KEGG:ns NR:ns ## COG: L145238_2 COG1263 # Protein_GI_number: 15673113 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Lactococcus lactis # 117 463 1 348 348 429 72.0 1e-120 MAEERIKRIADGIYKEVGGQENVDKVIHCMTRVRMDIRDYDKVDIEGLKKIDGVMGVVED DTLQVVVGPGTVNKVAQEMVDQAGVKLGEPFNHGTTTDASAGKSGKDLVEEKAAQMKAQQ KAKQNNTSPFKKVLKAISSIFVPMIPAFVGAGIIGGIAAVMSNLVVAGDISASWQQYIDV LNIIKNGIFAYLALYTGINSASVFGATPALGGVIGAVTMLTGMNPDAPISNIFTGGTLSA GQGGIIGVIFAVWLLSLLEKQLHKIVPESIDIIVTPTISLLVIGLATIFLIMPVAGAISN GLVGIINVVLEKGGMVAGFTLGLTFLPMVMFGLHQILTPIHIEMINQTGMTLLLPILAMA GAGQVGAALALWIRCKSDKKLVEMIKGALPVGILGIGEPLIYGVTLPLGRPFITACIGGG IGGAVIGAFGNVGAIAIGPSGVALIPLIANNQWLAYVLGLLAAYAGGFVATLFFGIPKDM QTTK >gi|307679309|gb|GL456418.1| GENE 294 301063 - 301911 985 282 aa, chain + ## HITS:1 COG:L147291 KEGG:ns NR:ns ## COG: L147291 COG1737 # Protein_GI_number: 15673115 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 4 282 2 282 283 200 41.0 3e-51 MQQNIVLSIQDRLQQLPKSERKIAEYILKNTETVISMNAQELAKQAGSSPAAIIRFCHSM DVNGFTELKLLLSANLGQMKQQMYTEVTKGESTADIKQKLQARFVHVVERSGQTLEDVAV NEAVDLLEKTEVIFVYGLGASSLVAQDIYQKFTRLGRTVFTTLDHHLFASMLGSTEKPSV FIVISNSGTNKEASTLADLAKQQGIPIVSITQDEKSVIGEKSDIVLQTSSGEDVPLRSAA TVSLVAQLYVVDVLFFAYAAKNYKETLEKIQISRKNIERLKE >gi|307679309|gb|GL456418.1| GENE 295 301962 - 302672 865 236 aa, chain - ## HITS:1 COG:SPy1766 KEGG:ns NR:ns ## COG: SPy1766 COG0406 # Protein_GI_number: 15675611 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Streptococcus pyogenes M1 GAS # 5 233 4 231 235 254 57.0 7e-68 MTEATTLYIIRHGKTMFNTIGRTQGWSDTPLTKQGEEGIYHLGLGLRDIDFKEAYSSDSG RAMQTAQIILQEHQNHQKIPYLTDKRIREWCFGSLDGGYDGELWGVVPRILAFKSYEDMM TTKITYRELANAIIEADTADWAEPYEVIRDRVWSGFEDIAHHREKNGGGKVMVVSHGLTI SFLLSLIDASLPMQMALENGSVTTLTYEKGTFTIQGINDSSYIEKGKKIAEKRRLL >gi|307679309|gb|GL456418.1| GENE 296 302713 - 303339 762 208 aa, chain - ## HITS:1 COG:lin2270 KEGG:ns NR:ns ## COG: lin2270 COG0491 # Protein_GI_number: 16801334 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Listeria innocua # 1 208 1 205 205 283 66.0 2e-76 MIQIEQIRTGVIQENCYLVYNEEALLIIDPGAEGAKLIQEITRLGKKPAAILLTHTHYDH IGAVEELRHHYQIPVYVSPLEQAWLSNPILNLSGLGRHDDIANIIVQPAEHEFKLTDYEI GGMKFSVVPTPGHSIGSVSFVFDDFVVVGDALFKGSIGRTDLHTGDMQQLLHSITTYLFT LPEEFPVYPGHGDATTIQHEKATNPFFN >gi|307679309|gb|GL456418.1| GENE 297 303559 - 304944 1613 461 aa, chain + ## HITS:1 COG:SPCC1672.03c KEGG:ns NR:ns ## COG: SPCC1672.03c COG0402 # Protein_GI_number: 19075374 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Schizosaccharomyces pombe # 54 461 58 463 527 268 36.0 1e-71 MFHFVIKGTGFSSKNLQEIKVYEETLFCIDEAGVIQEIIEPDAEAYETVLAEQKEAQRFQ ELPQDSYLLPGFVDLHVHAPQWAQSGTALDIPLYEWLNTYTFPLESKFADLAFAQQVYDE LVTQLLANGTTTALYFATIHYEASRRLAEICAEKGQRGLIGKVVMDDLNENPEYYRDQTT QQALEETERFIQEIQTLAQQTKQGVYPVVTPRFIPSCTEEALKGLGELAAKYQVHVQSHC SESDWEHQFVQERFGKNDAQALNDFGLLTEKAVMAHAGFLEEADMNLFHETGTAVAHCPI SNAYFGNAVTPIAKLVHQHQVEVGLGSDLSGGFSPSLFDNLKQAVISSRMLEDGVDATKK PEVRGVKTARITVNEAFYLATAGGGQALSLPIGKLEKGYAWDVQIINTSLSQARIPKNPG ESLLDIFQKILYLARPENIREVWVQGEKVHDKNLMSATKGV >gi|307679309|gb|GL456418.1| GENE 298 304948 - 306279 358 443 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 27 438 19 419 447 142 28 2e-32 MSEKKQNNLHLTVGPEDSVSFGQATMLGIQHVLAMDVYVVPVIIASIIGISTAQTSSLIQ ATFIAAGLATIIQSHFCMRLPVAQGPSFIPIGAIAGIYFANNQQGNGWGAVLGASLVGAI VVIILGFTGIFNRLITKFVPPIVGGTIIFVVGLSLMPVALSDNIYHAKGELGQNILLAFI AAGTLIFFALLGSALKKGRIFRVSSVILALLFGSIAAQLLGVLDLSAVSEAAWFSLPQLP LVNFSFQFDWSAIATMLVIYLVLMAETTGTWFAVSHVVAEPLTEEKINRGVIGEGLGCLV SSFIGGTPVTSYSTNAGIISITGVASRKVFVAAGAWFVLFGLSGKLSTLISAIPAPVIGG VFVVVCGIISVSGMKVMSDVTIHEKEMYVIAVPIIMTLALTLLPKEFLETLPQFLQYLFS SPVATASIVAILLQAILPNVQEG >gi|307679309|gb|GL456418.1| GENE 299 306421 - 307398 1212 325 aa, chain + ## HITS:1 COG:jhp0790 KEGG:ns NR:ns ## COG: jhp0790 COG0516 # Protein_GI_number: 15611857 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Helicobacter pylori J99 # 1 325 1 325 325 581 86.0 1e-166 MKVFDYEDVQLIPNKCIVNSRSECDTTVTLGKHSFKMPVVPANMQTIIDETIAETLAENG YFYIMHRFDEEARVPFIKKMQQKGLITSISVGVKEGEYAFVETLAREGLVPDYVTIDIAH GHSNAVINMIQHLKKTLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKT GFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSVRFGATMVMIGSLFAGHEESPG ETKVEDGVVYKEYFGSASEFQKGEKKNVEGKKIWLRHKGKLADTLVEMQQDLQSSISYAG GRDLEAIRKVDYVIVKNSIFNGDTI >gi|307679309|gb|GL456418.1| GENE 300 307560 - 307892 209 110 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|18309686|ref|NP_561620.1| 30S ribosomal protein [Clostridium perfringens str. 13] # 2 105 3 107 110 85 41 3e-15 MIGSDAIRGYNDTFILSILQSGASYGYAISKRIREISNEQYSIKETTLYSAFTRLEKNGY IESFPGEVTHGKKRTYYQITHAGERYLEEKLLEWEVTKDVVEAFVKEMGK >gi|307679309|gb|GL456418.1| GENE 301 307889 - 308917 1056 342 aa, chain + ## HITS:1 COG:no KEGG:EF2427 NR:ns ## KEGG: EF2427 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 342 1 342 342 650 98.0 0 MKIIEEFIDSLFSGVVETSETKQLKADLLANAEDRYEDLLSQGKSENEAIGTIISEFGTI DELMEELNLENKQVDETNDSMNGLPEISVEEGLDYLAVQRKGAIQIGLGVVAIMVGVGLL VGMRGVLSNGLGLVCLFIGVAIGVPLFIVAGNRFVAMDKQLGQRLIPIKLKKEVAQREQS FQRSFIFCMAAGVVFCILGLIPVVVFSSGLHLMMRRSMHQMMGGQYYNGTMGISWLFFLV SVGVFLFIFGGVIKGSFNKLLNETYFYSEHVGHPDFAPQQTKTEEGPVGNPVGAIIASVY WPLVVALYLFISFVLGDWRFSWLIFMFAGIFYNTIQAFLHKH >gi|307679309|gb|GL456418.1| GENE 302 309052 - 310503 1346 483 aa, chain + ## HITS:1 COG:lin2204 KEGG:ns NR:ns ## COG: lin2204 COG1167 # Protein_GI_number: 16801269 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Listeria innocua # 1 458 1 461 466 403 46.0 1e-112 MWQLKKEQNVPIYRSIMEMIVQKIQTGELLPGEKIPSERKLAEYLSVNRSTVVHALDELV DLGWIVRKRGSGTIVNEGKWGVMMTPRTDWHRYLEQNVFKQVHPLVAEIELRAKQNLPTD LDMYTGELPLDLIPSFDFPALNWKQFLKEEAQDELGYLPLRKEIQAITATEYQLHLPSES LLLTSGAQQALFLVLQVLLRQGDSVAVEDPSFFYALPIFQAAGVRLFGVPMTEEGIDLEA LEQTIRQHRIKMVMVNPSFQNPTGTVMPLRKREQLVKVCQTYQVPILEDDVFGQLSFIPK TEIPPLKKLDPDNVLYIGSLSKILGSTTKIGWLSAPASVTKQIAEARKMMDVSLSIFPQM LAKMAIEDPSFSEKITLLNKQVEQRATAVYQVFKSLPEWEVSPVKGGFYLWAHWRQGALK PEEWQVFLREGVLVAPSVAFSEKRGSIRLNCSRISPEEMPLFCERMVRITRQLSENRQTK IEQ >gi|307679309|gb|GL456418.1| GENE 303 310624 - 312348 2309 574 aa, chain + ## HITS:1 COG:SPy1224 KEGG:ns NR:ns ## COG: SPy1224 COG1109 # Protein_GI_number: 15675188 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Streptococcus pyogenes M1 GAS # 1 570 1 568 572 715 61.0 0 MSWEQVYQQWLNEENIPENLKNELKDLNTDPEKCEDAFYAPLEFGTAGMRGILGAGINRM NIFTVRQATEGLARFMDTQDPETKRRGVAIAYDSRHMSPEFAMEAAKTLAKHDIPSFVFE SLRPTPELSFAVRYFKAFAGIMITASHNPAAYNGYKVYGEDGGQMPPADADALTKYVRSI ENPLKIDVLSDEEVAHSGLINIVGEEVDNAYLKEIKTVTINQELINEMGKELKLVYTPLH GTGKMLGEKALKQAGFEKFVLVPEQAVADPDFTTVKSPNPEEHSAFEYAIRLGEKEGADL LIATDPDADRLGAAVRMPNGDYQVLTGNQLGSIMIHYILEAHQQAGTLPQNAAVLKSIVS SELATAIAEKYNTKMFNVLTGFKFIAEKIQQYEEDHSQTFMFGFEESYGYLVKPFVRDKD AIQALVLLAEVAAFYKKQGKTLYDGLQDIFEEFGYFEEKTISVTMSGIEGSGKIKALMAK CREQAPTEFAGIQVVQTEDFKELTRTFADGQTEQLQTPPSDVLKYHLEDGSWIAIRPSGT EPKIKFYLATKATSSSEASEKIAAFEAVVNELTK >gi|307679309|gb|GL456418.1| GENE 304 312454 - 313236 1002 260 aa, chain + ## HITS:1 COG:SP0933 KEGG:ns NR:ns ## COG: SP0933 COG0345 # Protein_GI_number: 15900813 # Func_class: E Amino acid transport and metabolism # Function: Pyrroline-5-carboxylate reductase # Organism: Streptococcus pneumoniae TIGR4 # 1 257 1 256 265 171 39.0 1e-42 MKIGFIGAGSMGGAMIKGLLKAEAVKKEHLYVKGGSSGTAEALQKEWGFQLVTDYALFQE CKVIFIATGAKVVLPVLQELAPHFSNESLLISVATGHTIQEAQMALGNKEAKVVHAIPNT PVSVNQGVIGVALAPTIEGQTKDLVMELLATLGLVKEIREAQLETFGTVAGCSPAFVDIF MEALGDAAVLEGLPRDLSYEIVAQMIKGTATLALETKKHPGALKDEVTSPGGSTIRGVVA LEKNGFRYAVMDAVQQANHE >gi|307679309|gb|GL456418.1| GENE 305 313374 - 313661 405 95 aa, chain + ## HITS:1 COG:BS_yozA KEGG:ns NR:ns ## COG: BS_yozA COG0640 # Protein_GI_number: 16078972 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 5 94 17 106 107 86 52.0 1e-17 MKQMEEIKQVSQLYKVLSDPTRLRILLLLKEGEHNVTAISEQLGMEQSAVSHQLKLLRDS RVVKARREGKTIFYTLDDHHVIDILNQTFEHIEHR >gi|307679309|gb|GL456418.1| GENE 306 313713 - 315005 1429 430 aa, chain + ## HITS:1 COG:lin2691 KEGG:ns NR:ns ## COG: lin2691 COG0460 # Protein_GI_number: 16801752 # Func_class: E Amino acid transport and metabolism # Function: Homoserine dehydrogenase # Organism: Listeria innocua # 1 427 1 426 428 482 58.0 1e-136 MKDTLKIGLLGLGTVGTGVLTLLKEHQEKISQVTGMNVVIEKAFVRNLETKQAQAEEYGL SLTTSIDDILEDKEIQIVVELMGTIEPAKTYIMKALEKGKHIVTANKDLLAQHGSELVAL AQKHHCDLYYEASVAGGIPILRTIANSLAADNIQQVLGIVNGTTNYMLTQMVSADKSYEE ALAEAQALGFAEADPTNDVDGIDAAYKMVILSQFAFGMNVSLPQVDIRGIRGLSLDDVAM AKQLGYEIKLIGSAEQNENSISVEVAPMLVNQKHPIASVRNEYNAVFIKSAGVGESMYYG PGAGAKPTATSVVSDLITIAKNIRLATTGHMFNSYQHKTQLTSSENVFGQYYFSLDVPDT PGQFLQLTQLMTKAEVSFDQLVQQKSDGQRARIVAITHQISKAQMQQVVTAIQNTEAFQL LNVMKVIGDE >gi|307679309|gb|GL456418.1| GENE 307 315008 - 316063 1531 351 aa, chain + ## HITS:1 COG:lin2690 KEGG:ns NR:ns ## COG: lin2690 COG0498 # Protein_GI_number: 16801751 # Func_class: E Amino acid transport and metabolism # Function: Threonine synthase # Organism: Listeria innocua # 1 348 1 349 351 535 82.0 1e-152 MYEGLLKQYQAYLPVTEKTPMISLAEGNTPLIPLPNLSKELGIQLYGKYEGLNPTGSFKD RGMVMAVAKAVEEGAKAIVCASTGNTSAAAAAYATRAGIKAYVVIPEGKIALGKLAQAIM YGADIISIPGNFDEALKAVREIAKTEAVALVNSVNPYRLEGQKTAAFEVCEQLGQAPDVL AIPVGNAGNISAYWKGFKEWHEKQGTTLPRMHGFEAEGAAAIVKGQVIEQPETVATAIRI GNPASWQLAEQARDESGGFIDAVTDQEILTAYRKIAAQDGVFIEPGSAASLAGVIQHVKS GKIKAGETVVAVFTGNGLKDPDTAMETEVTISKMSDVEEMRLHLRKGVATL >gi|307679309|gb|GL456418.1| GENE 308 316060 - 316923 912 287 aa, chain + ## HITS:1 COG:lin2689 KEGG:ns NR:ns ## COG: lin2689 COG0083 # Protein_GI_number: 16801750 # Func_class: E Amino acid transport and metabolism # Function: Homoserine kinase # Organism: Listeria innocua # 1 287 1 287 288 334 56.0 1e-91 MKIRVPATSANLGPGFDSCGIALSAYLTINVLGESEFWEIQHTMGEEIPTNEENLLIQTA LKITPELTPKVIRMVSDIPLARGLGSSSSVIVAGIELANRLAHLNLSPKEKVRLATEMEG HPDNVAPAILGDFVVASHVENQVYHVKHHFPMCDVIAFIPEEPLFTEKSRAVLPEKLAYK EAVAASSIANVMIAAILNGDLPLAGKMMEQDKWHETYRRSLVPHLKEIRRLTQQKGAYGS FLSGAGPTVLILSPEERTNEIVQSLEKLSTKASIQIFNIDQEGVQVF >gi|307679309|gb|GL456418.1| GENE 309 316984 - 317841 858 285 aa, chain - ## HITS:1 COG:BH1373 KEGG:ns NR:ns ## COG: BH1373 COG1806 # Protein_GI_number: 15613936 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 12 266 10 264 270 227 43.0 2e-59 MTIFEEKKCVTIFVISDSAGETASKLAAASMAQYPTVDFTLIRRTFVKDEDKLVQALEDA KKAEAMVLHTIINDHLVAIANQFFNEHQLFHFDILTPPVAEIERLTGVAPMREPGALHHL NENYFKRIEAMEFAVKYDDGKDPRGFLEADVLLLGVSRTSKTPLSLFLANKNLKVANLPL IPEAHLPKQLFEMDPKKIVGLTNDPNVLNGIRKERMRAYGLPENTSYSDIEKIRRELAFA NDLYQKLGCIVIDVASLSIEETASMILNALNLEDHSYYSTETSED >gi|307679309|gb|GL456418.1| GENE 310 317946 - 318380 423 144 aa, chain + ## HITS:1 COG:BS_zur KEGG:ns NR:ns ## COG: BS_zur COG0735 # Protein_GI_number: 16079565 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Bacillus subtilis # 7 141 2 135 145 135 47.0 2e-32 MAPVKTNIEQALETMKASGLKYTKKRELLMSYLIKRNRYVSAREVYEFMNETFKGVSYDT VYRNLHDFERLELLEKTELNGEQKFRFRCCQEVEHHHHFICTVCGKTEEIHMCPMNFFEE QLKGCSIEGHRFEILGRCADCCEK >gi|307679309|gb|GL456418.1| GENE 311 318483 - 318722 400 79 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227519866|ref|ZP_03949915.1| 30S ribosomal protein S21 [Enterococcus faecalis TX0104] # 1 79 1 79 79 158 98 2e-37 MWVFPTNKKNGYFLSSEGGNNMSKTVVRKNESLDDALRRFKRSVSKAGTLQESRKREFYE KPSVKRKKKSEAARKRKKF >gi|307679309|gb|GL456418.1| GENE 312 318748 - 319197 420 149 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 [Lactobacillus johnsonii NCC 533] # 1 146 1 146 147 166 55 1e-39 MSLLTTLNDDIKTAMKAKDKETLAVLRMLKTAIQNDQIKAGRELNGEEELTVLSREMKQR KDSLSEFEKAGRDDLVEKVKVEIAIVEKYMPQQLTEEEIRQLVQEVMTQTGATSPKDFGK VMGAMMPKVKGKADGNQVNAIVKELLQEN >gi|307679309|gb|GL456418.1| GENE 313 319380 - 320354 1303 324 aa, chain + ## HITS:1 COG:SP0948 KEGG:ns NR:ns ## COG: SP0948 COG1702 # Protein_GI_number: 15900827 # Func_class: T Signal transduction mechanisms # Function: Phosphate starvation-inducible protein PhoH, predicted ATPase # Organism: Streptococcus pneumoniae TIGR4 # 5 317 2 314 322 413 65.0 1e-115 MTDNQSKSLELILTDSDDAHMLLGTHDKHIKFLEENTHVTINSRGEVIQLIGESSEVELV ASVLRALQTLIQRGIKVHTPDVVSALKMAKAGNLEAFIAMYEEEIMKDHHGRAIRIKNVG QKKYIDAVKTHDVIFGVGPAGTGKTFLAVVMAVAALKKGEVQKIILTRPAVEAGESLGFL PGDLKEKVDPYLRPVYDALYQIFGMDHTNRLMERGVIEIAPLAYMRGRTLDDAFVILDEA QNTTVAQMKMFLTRLGFSSKMIVNGDTSQIDLPRGVTSGLVNAERTLKDIEKIAFVNFEA SDVVRHPVVAQIIQAYEKEQQKHS >gi|307679309|gb|GL456418.1| GENE 314 320383 - 322581 992 732 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762592|ref|ZP_02169656.1| ribosomal protein S21 [Bacillus selenitireducens MLS10] # 20 730 26 748 750 386 32 1e-106 MKKVLTKLGDRLGKAYLPILLAVFSLLLFMIMFGSVHQKRVEIKEGQLAEKTIRANKNIE NTYETEQRKKLAAEAVTPEYIYQEDTASVQHNRIDKLFKLIDSANEKVDKEYSNKQAKAK KEETIPAPTVEERVASLKSLFESLPQDEVTFYQSFPNVFYQTIFTLTSEQLDKVRSESLM LVDDAMQNHVRESDLDKIRQEANGKIQYLDITSTMQQVIRYIVNQGIVVNDIANEKRTEE LRQKAMNAVQPAMIYQGEIIVREGTQIDAKAVEKLELLGMTSQNTSIFPMVALALAILLQ VEVLIFFTKQVTEPSRQRSFIIFYTGAMLISVILMKFFQIFQTEQLMYIPLFYPAAFAPL ILNHFVNRRSGIIVAIFQVVFALFIFYNSIGTNSLTVILIMYLFSGFLATVVKRKRMSEQ VFPALMWVVVFPVFMVVVLMIYQGMSLTDGKTWTALICASAGTVLSFLATMGLHPYIELL VTDDSMIVLNELSNPNHPLLKQLLEEAPGTYHHSMMVASLSANAVAEIGGRSLLTRVACY YHDIGKIKHANFFVENLLAGAENPHNFLLPEDSKQIIFGHVIDGAKILEEYNMPQMVIDI CRQHHGTTLMKFFYVKAKERNPEIKESDFRYPGPRPQTREAGIVSIADTCEAAVRAMDHP TNEKIQAFVHNVIQDRISDGQLDECGLTMKEIRIIEKSLINGLCSTFHSRIKYPKMKAEA EEMKDEQEKRDD >gi|307679309|gb|GL456418.1| GENE 315 322581 - 323060 699 159 aa, chain + ## HITS:1 COG:lin1502 KEGG:ns NR:ns ## COG: lin1502 COG0319 # Protein_GI_number: 16800570 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Listeria innocua # 1 159 4 161 161 175 64.0 3e-44 MDITFIDETEKVPTEEIKEIENLLQFAAGFLEIAEDTEMSVTFTDNAGIQVINRDYRGKD MPTDVISFALEDEGEDELPIIFDDEELAELPRNLGDLIISTERAAEQAVEYGHTLEREMG FLAVHGFLHLNGYDHMEPEDEKEMFGLQKEILDAYGLKR >gi|307679309|gb|GL456418.1| GENE 316 323044 - 323445 431 133 aa, chain + ## HITS:1 COG:L95012 KEGG:ns NR:ns ## COG: L95012 COG0818 # Protein_GI_number: 15673069 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Diacylglycerol kinase # Organism: Lactococcus lactis # 4 128 25 149 151 124 52.0 6e-29 MALKDEQTGKNKHFINSLEFAWQGIKTVFREERNMRKHVAFGVTAIVFGFLFSLTLAEWL WLLLAVFLVWLAEIINTIFENVVDMFTDFHFHPIGKKVKDMAAGAVLLTAGFAVLVGLIL FVPKILQIIQMWK >gi|307679309|gb|GL456418.1| GENE 317 323459 - 324361 1237 300 aa, chain + ## HITS:1 COG:SP0969 KEGG:ns NR:ns ## COG: SP0969 COG1159 # Protein_GI_number: 15900846 # Func_class: R General function prediction only # Function: GTPase # Organism: Streptococcus pneumoniae TIGR4 # 6 300 4 299 299 424 73.0 1e-119 MTTEHKSGFVAIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGIYTIPEAQIVFI DTPGIHKPKHRLGDFMVESAYNAMREVDATLFMVSADQKRGKGDDFIIERLKNNNSPVYL IINKIDKVHPDDLLSIIEDYSKQMDFKEIIPISATEGNNFEHLMDVLVEQMPEGPQYFPD DQITDHPEYFIVSELIREKVLLLTRDEIPHSVAVVVDSMKRDENDKVHVQATIIVERDSQ KGIIIGKGGKMLKQIGTKARQDIEYLLDDKVYLELWVKVQKDWRDKKIYLQDFGYRKEEY >gi|307679309|gb|GL456418.1| GENE 318 324444 - 325229 698 261 aa, chain + ## HITS:1 COG:L1006 KEGG:ns NR:ns ## COG: L1006 COG1381 # Protein_GI_number: 15672040 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Lactococcus lactis # 1 253 1 251 251 240 45.0 2e-63 MALGETKGIILFTKDFKEKDKLVKIFTESYGKLMFFVKGAHRKNNPLLPAILPFTEAVYI GNFREEGLSFLNSSKEVQPFRNIQQDIFINAYGTYILNLVDAAIEDQHYDPNLFQFTHMA LSALNEQKDPEIITNIFEIQLLERFGVRPEWHHCVACGETQGKFDYSSKYSGVLCEKHWH LDEQRYHADPRAIHFIRLFSQVSYEKVQNIQVKEETKKSIRETIDMLYDEYVGLHLKSKK FIDQMKTWENTLKIPPRKKEE >gi|307679309|gb|GL456418.1| GENE 319 325271 - 326356 751 361 aa, chain + ## HITS:1 COG:no KEGG:SSUBM407_1706 NR:ns ## KEGG: SSUBM407_1706 # Name: not_defined # Def: membrane protein # Organism: S.suis_BM407 # Pathway: not_defined # 11 361 29 388 396 254 45.0 5e-66 MVSILYVLIVLVCFVAPITLTLYNVYFLFKRSHESRFEPAIERWTWSLGIILSLVFVRFM YMFKGDWQEVLINGATHNPIASEEQPVILWLIVIGLTGYFLLKFSKEKRLPPLVMVFAIA GTYIGIFVAAIWIVQLSNHILVVIFLGLPAFNFILLALRTIKEQIVAWQGDHTRVEKTGI LAKVLMNSLNWWWLAFIFMLPILGIFLAVLILFGQRPDAMVRAWTETSDWALSQKISPPN VQVDEHYLCTVAACGHRNFVKPQRMGIRHNHQVVVNRQLCVANAFEQILEEKVPKTHRFI RKNYDTYGFPIAKKIHSPYVADLVYLMMKPAEYFFLLVLYLVDIKPENRIALQYITKPKN F >gi|307679309|gb|GL456418.1| GENE 320 326997 - 327905 1109 302 aa, chain + ## HITS:1 COG:SP1475 KEGG:ns NR:ns ## COG: SP1475 COG0752 # Protein_GI_number: 15901325 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, alpha subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 302 1 302 305 533 84.0 1e-151 MKNKLTVQEMILTLQKFWSSNGCMLMQAYDTEKGAGTMSPYTFLRAIGPEPWNAAYVEPS RRPADGRYGENPNRLYQHHQFQVVMKPSPENIQELYLESLKLLGIDPLEHDIRFVEDNWE NPSMGCAGLGWEVWLDGMEITQFTYFQQVGGLQCHPVTSEITYGLERLASYIQEVESVYD LEWTQGVKYGEIFVQPEYEHSKYSFEISNQEMLLENFDKFEKEAKRCIEESLVHPAYDYI LKCSHTFNLLDARGAVSVTERAGYLARIRNMARSVAKIFVAEREKLGFPLLNKDQHVSKE AE >gi|307679309|gb|GL456418.1| GENE 321 327907 - 329991 2722 694 aa, chain + ## HITS:1 COG:lin1495 KEGG:ns NR:ns ## COG: lin1495 COG0751 # Protein_GI_number: 16800563 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, beta subunit # Organism: Listeria innocua # 1 694 1 688 688 671 48.0 0 MAKDLLLEIGLEEMPAHVVTPSRIQLEEKVIKFLDEHHLDYETVQSFATPRRLAVKVTAI PEKQADVEEEVKGPAKKIALDAEGNWSKAAQGFVRGQGVTTEDIVFKELNGVEYVYVTKF TKGQSAKEVLTKLNDVITSLTFPVTMHWANYDFEYIRPIHWIVALLDDEVIPFKVLDVTT GQTSRGHRFLGDDVTFQHANEYEAKLKEQFVVVQPNERKQMIVDQANALAAEKNWQLALD EELLEEVTNLVEYPTAFVGSFDEKYLSVPDEVLVTSMKEHQRYFEVRNDQGLLMPHFIAV RNGDNVHLENVIKGNEKVLIARLEDAEFFYNEDKKLTIEACVEKLKNVTFHEKIGSIYEK MQRVALIAQIIGRKIGLSEEELEDLKRASEIYKFDLVTNMVGEFPELQGIMGEKYALLQG EKPAVATAIREHYLPTSSEGELPETAIGAVLALADKLDSVFSFFSVGMIPTGSNDPYALR RQTYGVIRIIEDKGWTFPLVQLQTEVDEAVNQDVEKYGVLLNEGQAEVVEFVKARLRQLL MTKNVRHDIIDAVVSAEQADLSKLFASANILKSRFEDQDFKPSMEALTRVINLAKKGQEL LGDTEEGIDPSLFENKAEKELYQAVNDLSEAFATRTIAENYEALVNLRPLIDAYFNETMV MVEDEKVKQNRLKQLMQIAKMALSIASLDLLIVK >gi|307679309|gb|GL456418.1| GENE 322 330031 - 330222 295 63 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227553937|ref|ZP_03983984.1| ## NR: gi|227553937|ref|ZP_03983984.1| conserved hypothetical protein [Enterococcus faecalis HH22] conserved hypothetical protein [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis T2] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T3] conserved hypothetical protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis Merz96] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis D6] predicted protein [Enterococcus faecalis AR01/DG] conserved hypothetical protein [Enterococcus faecalis T11] hypothetical Cytosolic Protein [Enterococcus faecalis R712] hypothetical Cytosolic Protein [Enterococcus faecalis S613] conserved hypothetical protein [Enterococcus faecalis PC1.1] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] conserved domain protein [Enterococcus faecalis TX4248] conserved domain protein [Enterococcus faecalis TX0855] conserved domain protein [Enterococcus faecalis TX2134] conserved domain protein [Enterococcus faecalis TX0860] conserved domain protein [Enterococcus faecalis TX0109] conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX0470] conserved domain protein [Enterococcus faecalis TX0635] conserved domain protein [Enterococcus faecalis DAPTO 512] conserved domain protein [Enterococcus faecalis DAPTO 516] conserved domain protein [Enterococcus faecalis TX0102] conserved hypothetical protein [Enterococcus faecalis HH22] conserved hypothetical protein [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis T2] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T3] conserved hypothetical protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis Merz96] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis D6] predicted protein [Enterococcus faecalis ARO1/DG] conserved hypothetical protein [Enterococcus faecalis T11] hypothetical Cytosolic Protein [Enterococcus faecalis R712] hypothetical Cytosolic Protein [Enterococcus faecalis S613] conserved hypothetical protein [Enterococcus faecalis PC1.1] Bacterial RNA polymerase, alpha chain C terminal domain. [Enterococcus sp. 7L76] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX0109] conserved domain protein [Enterococcus faecalis TX0860] conserved domain protein [Enterococcus faecalis TX2134] conserved domain protein [Enterococcus faecalis TX0855] conserved domain protein [Enterococcus faecalis TX4248] conserved domain protein [Enterococcus faecalis DAPTO 512] conserved domain protein [Enterococcus faecalis TX0102] conserved domain protein [Enterococcus faecalis TX0635] conserved domain protein [Enterococcus faecalis DAPTO 516] conserved domain protein [Enterococcus faecalis TX0470] conserved domain protein [Enterococcus faecalis TX2137] conserved domain protein [Enterococcus faecalis TX4000] conserved domain protein [Enterococcus faecalis TX0027] conserved domain protein [Enterococcus faecalis TX4244] conserved domain protein [Enterococcus faecalis TX0031] conserved domain protein [Enterococcus faecalis TX0043] conserved domain protein [Enterococcus faecalis TX0312] conserved domain protein [Enterococcus faecalis TX0645] conserved domain protein [Enterococcus faecalis TX1302] conserved domain protein [Enterococcus faecalis TX1341] conserved domain protein [Enterococcus faecalis TX1342] conserved domain protein [Enterococcus faecalis TX1346] conserved domain protein [Enterococcus faecalis TX0309B] conserved domain protein [Enterococcus faecalis TX0630] conserved domain protein [Enterococcus faecalis TX0309A] hypothetical protein OG1RF_11838 [Enterococcus faecalis OG1RF] hypothetical protein HMPREF9520_02392 [Enterococcus faecalis TX1467] # 1 63 1 63 63 108 100.0 1e-22 MLETTFEQILTQLSKPAVRALTNEKIDSVDELYARGRKALLSLHGFGPKSIRTIEEMTGK ELK >gi|307679309|gb|GL456418.1| GENE 323 330256 - 331188 1147 310 aa, chain - ## HITS:1 COG:SPy0351 KEGG:ns NR:ns ## COG: SPy0351 COG0706 # Protein_GI_number: 15674505 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Streptococcus pyogenes M1 GAS # 4 310 5 307 307 261 46.0 1e-69 MRKLNRWLYGSGLLFLVMFLSGCVKTGADGQPTGEGFVYNFLVLPMSNAITYLVDNFNWN YGWAIIFITIIVRIIILPLGLHQSKKSFIQTEKMQAIKPQVDVAQAKMKQASTREEQMAA QAELQKIYKENNVSMVGGIGCLPLLIQMPIFSSLFFAARYTKGIATASFLGMNLGQPNMI LVALAGLAYLAQGYISMIGIPEEQKKTMKSMLIVSPLMIVFMSFSSPAGVALYWVVGGIF TCIQSAITNILLRPRIKKQVQEELKNNPPKQVVTPIKDVTPKETNKVTQKTNQPKANGNK GRNAGKQKRK >gi|307679309|gb|GL456418.1| GENE 324 331355 - 331630 403 91 aa, chain - ## HITS:1 COG:lin1418 KEGG:ns NR:ns ## COG: lin1418 COG1254 # Protein_GI_number: 16800486 # Func_class: C Energy production and conversion # Function: Acylphosphatases # Organism: Listeria innocua # 6 90 8 92 93 76 47.0 1e-14 MEKLRMNVQGRVQGVGFRYMTKMVADQLGVTGSVKNEDDGSVSITAIAPEDIMETFIKKI KDSPSPAGRVTYVDIQEDPLLEETEQFKVIQ >gi|307679309|gb|GL456418.1| GENE 325 331737 - 332513 207 258 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 26 252 3 240 255 84 28 5e-15 MKEITSTKNNQLKEWKKLHKKKYREELNQYIIEGFHLVEEAVKANADVQWILFNQRGQQE WGTWLAEQETEKLIFVSDEVLNSLSELPTSQGILAIVTLETQQEQSLSFKGGWLLLDNIQ DPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSMQGSHYHLPVLQRELTEVVQAFK KQGLPVFGTELNEAAIAYYEQEAVEIYALILGNEGSGVSPELLAETTKNLYIPMKGQAES LNVAIAAGVLMFYFENNQ >gi|307679309|gb|GL456418.1| GENE 326 332533 - 332970 483 145 aa, chain + ## HITS:1 COG:CAC1468 KEGG:ns NR:ns ## COG: CAC1468 COG0454 # Protein_GI_number: 15894747 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Clostridium acetobutylicum # 9 142 4 140 142 94 37.0 6e-20 MLTIKKTTQLTEKELETIMAIWLQTNLEAHPFVAPTYWQENKAFVHAALPKATLILAEEE GQIIGFLGLMDNYIAGIFIKKAFQGKGIGQKLLQVAKEEQDLLSLAVYRENQAAYAFYQK QGFVQQKRTIDETGNEECHLVWQAQ >gi|307679309|gb|GL456418.1| GENE 327 333154 - 333939 1336 261 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29376895|ref|NP_816049.1| 30S ribosomal protein S2 [Enterococcus faecalis V583] # 1 261 1 261 261 519 100 1e-146 MAVISMKQLLEAGVHFGHQTRRWNPKMKKYIFTERNGIYIIDLQKTVKLVDAAYDYMKNV AEEGGVALFVGTKKQAQEAIKDEAIRAGQYYVNHRWLGGTLTNWDTIQKRIARLKKINAM EEDGTFEVLPKKEVAGLNKERERLEKFLGGIADMPRIPDVMYIVDPRKERIAVQEAHKLN IPIVAMVDTNCDPDEIDVVIPSNDDAIRAVKLITAKMADAFIEGNQGEDQATEELFVEET PEATSIEEIVDVVEGNNESAE >gi|307679309|gb|GL456418.1| GENE 328 334045 - 334926 582 293 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts [Haemophilus influenzae R2866] # 1 287 1 275 283 228 44 2e-58 MADVTAKMVKELRDMTGVGMMDAKKALVKVEGDMEKAVDFLRENGMAKAAKKNDRIAAEG LANVATVGNVAAIVEVNSETDFVSKNEMFQDLVKDIATKVAENKPATMEEAMAIKTEKGT IESDLIEATTVIGEKISFRRFEVVEKADNAAFGAYLHMGGRIAVLTVIDGTTDEEVAKDV AMHIAAINPRYVNESQIPQEELEHEKAVLTEQALNEGKPANIVEKMVVGRLQKFKAEIAL VDQPFVKDPDMTVEKFVASKGGEVKSFVRFEVGEGIEKREDNFADEVMSQMKN >gi|307679309|gb|GL456418.1| GENE 329 335187 - 335909 968 240 aa, chain + ## HITS:1 COG:lin1350 KEGG:ns NR:ns ## COG: lin1350 COG0528 # Protein_GI_number: 16800418 # Func_class: F Nucleotide transport and metabolism # Function: Uridylate kinase # Organism: Listeria innocua # 1 240 1 241 242 358 76.0 5e-99 MVKPKYQRVVLKLSGEALAGEDGFGIKPPVIKEIVQEIKEVHELGIEMAIVVGGGNIWRG QIGAQMGMERAQADYMGMLATVMNALALQDTLENLGVPTRVQTSIEMRQIAEPYIRRRAE RHLEKGRVVIFAGGTGNPYFSTDTTAALRAAEVDADVILMAKNNVDGVYSADPRVDETAT KFEELTHLDVISKGLQVMDSTASSLSMDNDIPLVVFNLNEAGNIRRAILGENIGTTVRGK >gi|307679309|gb|GL456418.1| GENE 330 335913 - 336470 938 185 aa, chain + ## HITS:1 COG:lin1351 KEGG:ns NR:ns ## COG: lin1351 COG0233 # Protein_GI_number: 16800419 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome recycling factor # Organism: Listeria innocua # 1 185 1 185 185 213 70.0 2e-55 MSKEVLATAKEKMTKAEESLRRELGQIRAGRANASLLDRIQVEYYGAPTPVNQLASINIP EARVLMITPFDKNSIADIEKAIQMSDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKE AENSKVAVRNVRRDAMDELKKAQKNGDITEDELRSFEKDVQKLTDDSIKNIDAITAEKEQ ELLEV >gi|307679309|gb|GL456418.1| GENE 331 336840 - 337610 194 256 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 3 228 1 221 245 79 27 2e-13 MSVLEIKNLHVSIEDKKILKGVDLTINTGEIHAIMGPNGTGKSTLSAAIMGNPNYEVTEG EILFDGVNVLDLEVDERARLGLFLAMQYPSEIPGITNAEFMRAAINAKRDEDNKMSVMQF LKKLDSKMELLNMPEEMAERYLNEGFSGGEKKRNEILQLLMLEPTFAILDEIDSGLDIDA LKVVSKGVNEMRGENFGALIITHYQRLLNYITPDVVHIMMEGRVVKTGGADLAKRLETEG YAGISQELGIDYKEEA >gi|307679309|gb|GL456418.1| GENE 332 337625 - 338911 1545 428 aa, chain + ## HITS:1 COG:SPy0287 KEGG:ns NR:ns ## COG: SPy0287 COG0719 # Protein_GI_number: 15674461 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Streptococcus pyogenes M1 GAS # 11 426 4 417 420 491 59.0 1e-139 MKKVNLMDYLDEVTAFSLEHEEPAWMTELRTTALKNADESELPHIDRVKFHRWPLLNVHM ESYVPSEGNVASFDQMKDNPLIVQQGSFHAFEQLPASLAEQGVIFTDIFTALQEHPELVK EYYMTKAVLPEEDKLTAAHAAFMNSGVFLYVPKNVVIEEPIESLFIQDSDSNQPFFKHVL IVADNHSEFSYLERFQSTGHHAEKASGNIVVEVIAKDGAKVKYSAVDQLGQTVTTYMNRR GYIMRDASVDWALGVMNDGDVVADFDSDLVGEGAHSEVKVVAISAGKQTQGIDTRVTNKA PHSIGHILQHGVIRERGTLTFNGIGHILKGAKGADAQQESRVLMLSDKARGDANPILLID ENEVTAGHAASVGRVDPEEMYYLMSRGLRKEEAERLVIRGFLGSVITAIPVKEVQNEFVE VIEGKLNA >gi|307679309|gb|GL456418.1| GENE 333 338908 - 340143 1448 411 aa, chain + ## HITS:1 COG:SP0869 KEGG:ns NR:ns ## COG: SP0869 COG0520 # Protein_GI_number: 15900752 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Streptococcus pneumoniae TIGR4 # 1 411 1 408 408 582 68.0 1e-166 MMDAATIRQSFPILFQEVNDEPLVYLDNAATTQKPTAVLDVLRHYYETDNANVHRGVHTL AERATKDYESSREKVRQFIHAKETAEVLFTRGTTTSLNWIAKSYGDLAVTDGDEIVISYM EHHSNIIPWQQLAQRTGAILKYIDVTEDGFLDMASARQQITEKTKIVSIAHVSNVLGVIN PIEELTQLAHQNGAVMVVDGAQAVPHMPVDVQAIDADFYAFSGHKMCGPTGIGVLYGKRH LLEQMEPVEFGGEMIDFVHLQESTWKELPWKFEAGTPNIAGAIALGAAIDYLTEIGLEAI HQHEAALVHYVLPKLQAIEGLTIYGPQDPKDHTGVIAFNIEGLHPHDVATALDMEGVAVR AGHHCAQPLLNYLSVPATARASFYLYNTKEDADRLVEAIKATKEFFQHGTF >gi|307679309|gb|GL456418.1| GENE 334 340130 - 340597 668 155 aa, chain + ## HITS:1 COG:SPy0289 KEGG:ns NR:ns ## COG: SPy0289 COG0822 # Protein_GI_number: 15674463 # Func_class: C Energy production and conversion # Function: NifU homolog involved in Fe-S cluster formation # Organism: Streptococcus pyogenes M1 GAS # 1 147 1 146 159 164 57.0 7e-41 MALSKLDNLYRQVILDHSSHPHHHGTLDASSQTIELNNPTCGDVIELDVAIEDGVIKDIA FQGSGCSISTASASMMTDAVLGKTIAEATALAEDFSQLVQGNEVAEDEKLGDAAMLSGVA KFPARIKCATLAWKALEQAVANNGQGEAGHLHCEK >gi|307679309|gb|GL456418.1| GENE 335 340616 - 342010 1532 464 aa, chain + ## HITS:1 COG:SP0871 KEGG:ns NR:ns ## COG: SP0871 COG0719 # Protein_GI_number: 15900754 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Streptococcus pneumoniae TIGR4 # 6 464 12 470 470 802 87.0 0 MSTVPELEEYKFGFHDDVEPVFSTGDGLTEDVVREISRVKGEPEWMLDFRLKSLEQFNKM PMQEWGPDLSDIDFSKIKYYQKPSDKPARDWDDVPDKIKETFEKIGIPEAERAYLAGASA QYESEVVYHNMKEEFEKLGIIFTDTDSALKEYPDLFKEYFSKLVPPTDNKLAALNSAVWS GGTFIYVPKGVRVDVPLQTYFRINAENTGQFERTLIIVDEGASVHYVEGCTAPTYSSNSL HAAIVEIFTRKDAYCRYTTIQNWSDNVYNLVTKRAKAYEGATVEWIDGNLGAKTTMKYPS VYLDGKGARGTMLSIAFAGANQIQDTGAKMIHNAPNTSSSIVSKSIAKDGGEVNYRGQVT FGKDSAGSISHIECDTIIMDEKSKSDTIPFNEIHNSQVSLEHEAKVSKISEEQLYYLMSR GLSEAEATEMIVMGFVEPFTKELPMEYAVELNRLISYEMEGSVG >gi|307679309|gb|GL456418.1| GENE 336 342105 - 343247 807 380 aa, chain - ## HITS:1 COG:L55605 KEGG:ns NR:ns ## COG: L55605 COG0582 # Protein_GI_number: 15673415 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Lactococcus lactis # 3 377 2 357 359 174 32.0 2e-43 MAKISKYKKKNGQVAWMYKGHIATDPRTGEKINTTRRGFSSKQEAQKDYDEYRHQILYGV KKKAPDMTFEDLYNEWITHQRTSVKASTIAISVRYANNQVLPAFGKLKLSNISVPYCQKV VDEWHSKYESYDYMRKQTAQILRYGVAMQYIDNNPMEKTLLPRKKEYEKNRKFYSKEELN NLLDAFKDFGNMKQYAFFRLLAYTGMRKSEVLALQWKDIDTFNKELHVNKTLAVDEFGKV IIQSPKTRASRRVISLDTETLSILNNWKLQQKEEYLKLGYNTSSKEQHVFTTVKNTLYIP NTVNDWLRYILKKYNLPRITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLDIYAH ITNNAPKKTGQDFADMMAHQ >gi|307679309|gb|GL456418.1| GENE 337 343286 - 343540 178 84 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|69245858|ref|ZP_00603675.1| ## NR: gi|69245858|ref|ZP_00603675.1| Helix-turn-helix motif [Enterococcus faecium DO] helix-turn-helix domain-containing protein [Enterococcus faecalis ATCC 4200] helix-turn-helix domain-containing protein [Enterococcus faecalis T8] helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] DNA-binding protein [Enterococcus faecium DO] helix-turn-helix domain-containing protein [Enterococcus faecium C68] helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] helix-turn-helix domain-containing protein [Enterococcus faecium D344SRF] hypothetical protein EfmE1162_2147 [Enterococcus faecium E1162] hypothetical protein EfmE1636_1232 [Enterococcus faecium E1636] hypothetical protein EfmU0317_0240 [Enterococcus faecium U0317] hypothetical protein HMPREF9521_02781 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9525_01047 [Enterococcus faecium TX0133a04] hypothetical protein HMPREF9527_01433 [Enterococcus faecium TX0133C] hypothetical protein HMPREF9522_00287 [Enterococcus faecium TX0082] hypothetical protein HMPREF9523_00855 [Enterococcus faecium TX0133A] hypothetical protein HMPREF9526_01755 [Enterococcus faecium TX0133B] hypothetical protein HMPREF9524_01210 [Enterococcus faecium TX0133a01] Helix-turn-helix motif [Enterococcus faecium DO] helix-turn-helix domain-containing protein [Enterococcus faecalis ATCC 4200] helix-turn-helix domain-containing protein [Enterococcus faecalis T8] helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] helix-turn-helix domain-containing protein [Enterococcus faecium C68] helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] helix-turn-helix domain-containing protein [Enterococcus faecium D344SRF] hypothetical protein EfmE1636_1232 [Enterococcus faecium E1636] hypothetical protein EfmU0317_0240 [Enterococcus faecium U0317] hypothetical protein EfmE1162_2147 [Enterococcus faecium E1162] Helix-turn-helix. [Enterococcus sp. 7L76] hypothetical protein HMPREF9521_02781 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9524_01210 [Enterococcus faecium TX0133a01] hypothetical protein HMPREF9526_01755 [Enterococcus faecium TX0133B] hypothetical protein HMPREF9523_00855 [Enterococcus faecium TX0133A] hypothetical protein HMPREF9527_01433 [Enterococcus faecium TX0133C] hypothetical protein HMPREF9525_01047 [Enterococcus faecium TX0133a04] hypothetical protein HMPREF9522_00287 [Enterococcus faecium TX0082] hypothetical protein HMPREF9496_00894 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9511_00765 [Enterococcus faecalis TX0630] HTH DNA-binding protein, putative prophage repressor [Enterococcus faecalis 62] # 1 84 161 244 244 123 100.0 5e-27 LKIEELFINAIVEEFDNNILFLTSSIEELLERMVDEWLPIQLKDMSYPEEAVREITDNIN KLEQTISSIGKKYTKKKMKGGDTI Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:41:52 2011 Seq name: gi|307679308|gb|GL456419.1| Enterococcus faecalis TX0411 genomic scaffold Scfld52, whole genome shotgun sequence Length of sequence - 2849 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 11/0.000 - CDS 1 - 1096 1201 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 2 1 Op 2 27/0.000 - CDS 1110 - 2273 858 ## COG0732 Restriction endonuclease S subunits 3 1 Op 3 . - CDS 2263 - 2811 627 ## COG0286 Type I restriction-modification system methyltransferase subunit Predicted protein(s) >gi|307679308|gb|GL456419.1| GENE 1 1 - 1096 1201 365 aa, chain - ## HITS:1 COG:SPy1904 KEGG:ns NR:ns ## COG: SPy1904 COG0610 # Protein_GI_number: 15675717 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Streptococcus pyogenes M1 GAS # 6 340 6 329 992 300 46.0 4e-81 MKISHREEAEVEEQLICVLGEGHNQWTYRPDLKSEEDLWSNLRQKIISNNQAELNDSPLT DKEFETIKTELLLRTKTPFDAAKWLKGENGIARITIEREDPQLGSVSLILYSNQDIGGGI STYEVVHQIAKRGSNIEARDRRFDVTLLINGLPIVQIELKQVTAKNGFYQAFNQIKKYAE EGMFRNNIFSTLQLFVVSNEQTTRYFANALPKDLHPKFLFSWRTKDNEKVENLYEFCKQV LNIPDAHRLIADYTIVSEDQDNKTLMVLHPYQVHAIQALFIAANKHQSGYVWHATGSGKT LTSFVSTKLLARKSGIDRTIMLVDRKDLDNQTTTEFTKFASEFNTGISSGNAKANSLIVG TGSAK >gi|307679308|gb|GL456419.1| GENE 2 1110 - 2273 858 387 aa, chain - ## HITS:1 COG:L0310 KEGG:ns NR:ns ## COG: L0310 COG0732 # Protein_GI_number: 15672634 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Lactococcus lactis # 7 387 8 407 407 214 37.0 2e-55 MSNDTQPEIRFPGFTEDWEQRKLGEVVESVGTGRSTFTNGIVQTSETPYAVLGSTSVISY DSMFDHSGDFILTARVGANAGNLYKYFGEVKISDNTVYIQADNLDFIYYLLTKYDLKRLS FGTGQPLVKASEVKNLKLNFPQKNEEQQKIGTFFKNLDDTITLHQRKLDLLKETKKGFLQ KMFPKNGAKVPEIRFPGFTEDWEERKLGEIVRISSGFTGDSSLNIGQYELTRIETIATGQ VNPNKVGYSNTEPDKKYLLDKGDILFSNINSLSHIGKIALFDLDMKLYHGINLLRLQPMN VNSQFLYQSFQLNNHLEWAKSHANQAVSQASINQTELSKQVFLVPSQQEQQKIGTFFKQL DDTIALHQRKLDLLKETKKGFLQKMFV >gi|307679308|gb|GL456419.1| GENE 3 2263 - 2811 627 182 aa, chain - ## HITS:1 COG:lin0522 KEGG:ns NR:ns ## COG: lin0522 COG0286 # Protein_GI_number: 16799597 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Listeria innocua # 1 179 351 529 529 193 51.0 1e-49 MAIVLPHGVLFRGAAEGVIRQKLLEDGSIYAVIGMPANLFFGTSIPTTVIVLKKNRQTRD VLFIDASREFVKGKNQNKLSEENIQKILETYAERKDVEKYAHLATFDEIKENDYNLNIPR YVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKELLEAISSLQTTPENEMWLQGALEVFKH EQ Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:42:00 2011 Seq name: gi|307679307|gb|GL456420.1| Enterococcus faecalis TX0411 genomic scaffold Scfld55, whole genome shotgun sequence Length of sequence - 27205 bp Number of predicted genes - 34, with homology - 31 Number of transcription units - 18, operones - 9 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 11/0.000 - CDS 1027 - 2517 1071 ## COG1070 Sugar (pentulose and hexulose) kinases - Term 2529 - 2569 6.8 2 1 Op 2 . - CDS 2579 - 3886 1046 ## COG2115 Xylose isomerase - Prom 3913 - 3972 7.1 3 2 Op 1 9/0.000 - CDS 3991 - 4398 405 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 4 2 Op 2 1/0.333 - CDS 4410 - 4892 412 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 5 2 Op 3 13/0.000 - CDS 4917 - 5729 624 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 6 2 Op 4 . - CDS 5722 - 6507 792 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 7 2 Op 5 . - CDS 6507 - 8573 1562 ## COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases - Prom 8730 - 8789 8.2 + Prom 8847 - 8906 11.0 8 3 Tu 1 . + CDS 9152 - 10105 667 ## COG1940 Transcriptional regulator/sugar kinase + Term 10126 - 10174 4.3 + Prom 10130 - 10189 9.5 9 4 Tu 1 . + CDS 10359 - 10478 70 ## + Prom 10519 - 10578 1.9 10 5 Op 1 11/0.000 + CDS 10614 - 10889 157 ## COG2801 Transposase and inactivated derivatives + Prom 10915 - 10974 4.5 11 5 Op 2 . + CDS 10995 - 11306 121 ## COG2801 Transposase and inactivated derivatives + Prom 11476 - 11535 6.5 12 6 Tu 1 . + CDS 11563 - 11652 82 ## + Term 11901 - 11941 -0.8 13 7 Tu 1 . + CDS 12034 - 12174 68 ## gi|323479729|gb|ADX79168.1| PTS system, IIABC components domain protein + Term 12190 - 12229 -1.0 - Term 12337 - 12386 -0.9 14 8 Op 1 3/0.000 - CDS 12413 - 12739 149 ## COG0492 Thioredoxin reductase 15 8 Op 2 . - CDS 12805 - 13506 670 ## COG0492 Thioredoxin reductase 16 8 Op 3 . - CDS 13557 - 13631 97 ## 17 8 Op 4 . - CDS 13609 - 14643 399 ## COG0004 Ammonia permease - Prom 14671 - 14730 6.8 - Term 14829 - 14870 7.6 18 9 Op 1 . - CDS 14873 - 15277 192 ## COG5341 Uncharacterized protein conserved in bacteria 19 9 Op 2 . - CDS 15329 - 15715 388 ## EF0545 hypothetical protein 20 9 Op 3 . - CDS 15728 - 15901 298 ## PROTEIN SUPPORTED gi|29375162|ref|NP_814315.1| 50S ribosomal protein L32 + Prom 16097 - 16156 10.5 21 10 Op 1 3/0.000 + CDS 16252 - 17304 375 ## COG5438 Predicted multitransmembrane protein 22 10 Op 2 . + CDS 17291 - 18055 345 ## COG5438 Predicted multitransmembrane protein - Term 18550 - 18592 6.0 23 11 Op 1 3/0.000 - CDS 18688 - 19170 368 ## COG2190 Phosphotransferase system IIA components 24 11 Op 2 3/0.000 - CDS 19181 - 20683 1408 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 25 11 Op 3 . - CDS 20676 - 21383 684 ## COG3010 Putative N-acetylmannosamine-6-phosphate epimerase - Prom 21509 - 21568 11.0 + Prom 21457 - 21516 8.7 26 12 Tu 1 . + CDS 21540 - 22358 618 ## COG1737 Transcriptional regulators - Term 22370 - 22433 14.5 27 13 Op 1 2/0.167 - CDS 22438 - 22644 142 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs 28 13 Op 2 . - CDS 22657 - 22917 97 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs - Prom 23040 - 23099 6.9 + Prom 22977 - 23036 5.1 29 14 Tu 1 . + CDS 23133 - 23558 197 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs 30 15 Tu 1 . - CDS 23604 - 24269 257 ## EF0533 hypothetical protein - Prom 24348 - 24407 5.0 31 16 Op 1 . - CDS 24414 - 24536 97 ## EF0532 hypothetical protein 32 16 Op 2 . - CDS 24566 - 24982 387 ## EF0531 hypothetical protein - Prom 25025 - 25084 8.9 - Term 25009 - 25050 -0.4 33 17 Tu 1 . - CDS 25112 - 26320 691 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 26385 - 26444 9.3 - Term 26450 - 26495 9.1 34 18 Tu 1 . - CDS 26520 - 27203 748 ## COG1404 Subtilisin-like serine proteases Predicted protein(s) >gi|307679307|gb|GL456420.1| GENE 1 1027 - 2517 1071 496 aa, chain - ## HITS:1 COG:L0231 KEGG:ns NR:ns ## COG: L0231 COG1070 # Protein_GI_number: 15673490 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Lactococcus lactis # 1 496 1 496 501 528 53.0 1e-149 MSYVLGIDLGTSSLKGLLVSEIGDVIATSSSDYPLFSSRPGYSEQNPHDWIKAIENVIND LLSEFPEMKKELKGISISGQMHSLVLLDKDNEIIRPAILWNDVRTTKQCEDIMNCMGREV QEITKNIALEGFTLPKILWVQENEEKNWTKTRHIMLPKDYLVHWLTGCYSTDYSDAAGTL MLDVKKRIWSKTILDKFNIPKEYLPTLFESSAKVGNMRSSLINKFGLETKVEIFAGGADN ACAAIGAGIVNSEVAMLSIGTSGVFLSMEDDAENEYQDNLHLFNSALPNSYYSMGVTLAA GNSLKWFRDTFAKDAEFSDLLANIDEVIVGSEGLIFTPYIRGERTPYQDSQIRGSFIGID SRHSLKHFTRSVIEGITFSLKESKVIMEQRKNLKIKKIISVGGGTKNQQWLQIQADIFGL PITTLETEQGPSLGAAILAVIGCGMCANIDSCIKMFVKYKKVYQPIEKNVLLYNKFFQVY SKVYSTTKEICYQLQE >gi|307679307|gb|GL456420.1| GENE 2 2579 - 3886 1046 435 aa, chain - ## HITS:1 COG:L0230 KEGG:ns NR:ns ## COG: L0230 COG2115 # Protein_GI_number: 15673491 # Func_class: G Carbohydrate transport and metabolism # Function: Xylose isomerase # Organism: Lactococcus lactis # 1 434 1 438 439 553 64.0 1e-157 MVYFPKIEKIKYEGTNTKNMYAFRHYNPEKIIMGKTMKEHLRFAVAYWHTMTQDGSDPFG KAVNKRSWLGESPMETAKKRVIAFFEILEKLDVEYFCFHDIDIAPEGNSLKEFFSNIDEI TDLIKEKMDETGIKLLWNTANMFSNPRYVNGAASTNNANVYAIAAAQVKKGLDISKKLGG ENYVFWGGREGYETLLNTDMKFEQDNIARLFKMAIFYGEKIGHKPQFLIEPKPKEPSKHQ YDFDAATTMAFILKYGLEKDFKLNLEANHATLAGHTFEHELNVARNYGALGSIDANQGDV LLGWDTDEFPTNVYDVTLAMYEILENGGIEPGGINFDSKVRRSSFEMEDLLLAHIAGMDT FARGLKSAMKLKEDRFFEDLKEQRYSSFKKGIGAKIISGKENLESLTNYALKNDEPIIES SHIEYVKNILNDYLY >gi|307679307|gb|GL456420.1| GENE 3 3991 - 4398 405 135 aa, chain - ## HITS:1 COG:YPO1758_1 KEGG:ns NR:ns ## COG: YPO1758_1 COG2893 # Protein_GI_number: 16122014 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Yersinia pestis # 1 121 1 121 162 72 31.0 2e-13 MTNEVILMSHGLMAKEILNSAQMILGDQINYPVVSMTPDDGIEGTFNKLDKIIGTLNDAK RIVILADLMGGTPANTAMMLASEDSRIQVITGVNLGMVLESFFAIKEENLVEHLLKIGTE SIKIPKLQIAEEEEE >gi|307679307|gb|GL456420.1| GENE 4 4410 - 4892 412 160 aa, chain - ## HITS:1 COG:lin0021 KEGG:ns NR:ns ## COG: lin0021 COG3444 # Protein_GI_number: 16799100 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Listeria innocua # 1 151 1 151 162 132 47.0 3e-31 MEMKGINNIRIDDRLIHGQVATMWSNKLGVTRLMVVNDNVAKNDLQKQVLRMAVPAGISS SIITEETAISNIKNGKYEGQNVLMIVKSPVDLLPFIENDLEIKRINVGNMSNRNNTTVLR PNISVTDEERSAFEKLLSLDIEITTIMTPDDKKTFLKDIL >gi|307679307|gb|GL456420.1| GENE 5 4917 - 5729 624 270 aa, chain - ## HITS:1 COG:lin0023 KEGG:ns NR:ns ## COG: lin0023 COG3716 # Protein_GI_number: 16799102 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Listeria innocua # 21 269 26 274 275 195 44.0 1e-49 MNNIEQLKLRIDTKTKRSVLWRWFFTSSVSSNYEKMQALAYCYAVLPFLKIAYKNKPEAL QKAVLNHLQFFNTNPWVAPYILGINVAMEENADENTEEAVTSIKTGLMGPVAGLGDSLFV VIPWTIFGAIAANMAIDGSPVGILLWIVVSVALKLVSIPLFNAGYASGTKLIATIEKSLK LLTESTSILGLMVVGALIPSVVKANITLNFKQGNFSMKGQDILDQIMPGLLPALLVGLVF WALKKNVKPIYLILGVMVLSIVLAALGILK >gi|307679307|gb|GL456420.1| GENE 6 5722 - 6507 792 261 aa, chain - ## HITS:1 COG:lin0022 KEGG:ns NR:ns ## COG: lin0022 COG3715 # Protein_GI_number: 16799101 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Listeria innocua # 1 246 1 246 267 184 41.0 1e-46 MEASIFQLVLIVLYGFFINFEKNSTMFGTYQPVTAGFVTGLILGDISTGLFIGGTLQLLS LGISNFGGASIPDYQTASIVATFITITTGQKPSVGISIGIPVALLMVQLDVIRNTIGIWM VHKAEAGVKKGDYSMITKMQMFGVFLTAATTGIPVALAVIFGPSLINTILSYTPEWLTNG LTVAGGLLPAVGIGLLLRYLPAKEYFSYLVIGFVMAVYMKIPLLGVALVGAAIALIIYKK NSQDLVKNTVINIAGGMDDDE >gi|307679307|gb|GL456420.1| GENE 7 6507 - 8573 1562 688 aa, chain - ## HITS:1 COG:BH2055 KEGG:ns NR:ns ## COG: BH2055 COG1501 # Protein_GI_number: 15614618 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-glucosidases, family 31 of glycosyl hydrolases # Organism: Bacillus halodurans # 1 670 1 647 657 647 46.0 0 MIEVTPKSFSRTFDDELLIVEAWGENAVRVRSFVDMNFENRLNSLIGEPDALGTVIINQD KNKTELINGKIRVVLDHRDRLTFYNEKNGVLLKEFIRLRAVKHDDGSEDAGTIEITKDFN STLKLKSREYHSNLQGGFQVTTRFESESSEKIFGMGQYQQSYLDLKNTVLELAQRNSQVS IPFYVSSLGYGFLWNNPGIGEVSFAKNMTRWKMASTNYIDYVVIAGDTPKEILRNYSDLT GKVPKMPENLLGLWQSKLRYRSPNEVMDVVKKYYALGIKLSTIAIDYFHWPKQGEYRFDE EYWPQPEQFLRTLRDEYNVEPIISIWPTVQTDAMNFNEYLENGYLVKVNRGVRLTMQIQG NTIFVDMTNEKAREYVWNLIKKNYVNKGVKYFWLDVAEPGYSVYDFDNYRYKKGTDLQIG NLYPIDYLSMISEGLGNNQSVVTLVRGGWAGAQRYGALLWSGDIDSSFEAFRNQVNTGLN VGLAGLPWWTTDIGGFHGGDPKDPEFRELLVRWFQYATFSPILRMHGDRLPHSKPLSDHG GGSMVTGAPNEIWSYGKEVEQILTKYIKIREELKPYISKLMRQAHEFGDPLMRTLFYEYP HDQNAWNIEDTYLFGDAILVAPIENYKETSREVYLPKGESWTNLWTRESFDGGKTVVVEA DIQQIPIFIKTSEKGKFSKLFDVIKEEN >gi|307679307|gb|GL456420.1| GENE 8 9152 - 10105 667 317 aa, chain + ## HITS:1 COG:BH0700 KEGG:ns NR:ns ## COG: BH0700 COG1940 # Protein_GI_number: 15613263 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Bacillus halodurans # 1 311 72 383 388 149 32.0 5e-36 MLTFNGSSSALVIAIDLGYNYIDGALASLDGKEIHRVQLIDTYVNKKNVQDLIHKVFNQL TSDCPHTHYGIVGMTIALQGQVLNNKIISTSYNDLAEINLVEMLNQEYNFPVFLQNEANL SALGEYTFSSDIENLASISLHSGIGVGLVKNGKLDVGNKGYAGQLGHTILFPNGRKCTCG NHGCLEKYCSTQVIYHEISKEKNLNKINSDVVSILYNNKESKVVKMIEQYAYYLSIGVNN AIMLYAPELVIFNSPLTKKIPDIINIIQRNLNNQFTKDVLVINSPIEWNPVISGAISLSI QKFLNIEQLKLGKLNKI >gi|307679307|gb|GL456420.1| GENE 9 10359 - 10478 70 39 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKENIPVKTIMEELGIKNKTQIDTWWRWGIVMARIIIV >gi|307679307|gb|GL456420.1| GENE 10 10614 - 10889 157 91 aa, chain + ## HITS:1 COG:SA0063 KEGG:ns NR:ns ## COG: SA0063 COG2801 # Protein_GI_number: 15925770 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 1 91 1 91 117 62 39.0 1e-10 MEPEVFVELVKRMKGKLPITALCQLFGISRATYYRWTHRKDLGKLTPLEEAVRRLCFQHK FRYGYRKITALINQEYKVNKNTVQKIMRKYH >gi|307679307|gb|GL456420.1| GENE 11 10995 - 11306 121 103 aa, chain + ## HITS:1 COG:L0432 KEGG:ns NR:ns ## COG: L0432 COG2801 # Protein_GI_number: 15672069 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 3 102 126 230 279 83 42.0 1e-16 MVTDITYLPFGKKQLYLSSIMDLYNGEIIAYTIGDKQDTDFVLDTFDQLPQTTDCLLHSD QGSVYTSFDYQNQIKKGITMSSSRKGTPSDNACIESFHASLKS >gi|307679307|gb|GL456420.1| GENE 12 11563 - 11652 82 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNILFLSICLFYIATILTGVYHLRNNKKK >gi|307679307|gb|GL456420.1| GENE 13 12034 - 12174 68 46 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|323479729|gb|ADX79168.1| ## NR: gi|323479729|gb|ADX79168.1| PTS system, IIABC components domain protein [Enterococcus faecalis 62] # 1 46 1 46 46 73 100.0 4e-12 MDNPMIKNSGLYDTIMVIITNSKGYSEVIPITKNKIAEGIFLLSTK >gi|307679307|gb|GL456420.1| GENE 14 12413 - 12739 149 108 aa, chain - ## HITS:1 COG:SA2370 KEGG:ns NR:ns ## COG: SA2370 COG0492 # Protein_GI_number: 15928163 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Staphylococcus aureus N315 # 4 90 252 337 368 65 41.0 2e-11 MITENGKSLPVENIPILCTGFKNGTKSITASLFKYKENGEVLLNDFDESTIAKNIFLTGP NVRKGNTIFCYIYKFRQRFAVIANEIARRKHITIDEKNCHTIKINLFI >gi|307679307|gb|GL456420.1| GENE 15 12805 - 13506 670 233 aa, chain - ## HITS:1 COG:SA2370 KEGG:ns NR:ns ## COG: SA2370 COG0492 # Protein_GI_number: 15928163 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Staphylococcus aureus N315 # 22 224 22 219 368 207 50.0 2e-53 MENKEVIIIGAGAAGVGMGVALKDFGINNFAILERKQVGNSFIKWPEETRFITPSFTSNG FGMPDLNAIAIDTSPSYTLGKERLSGKDYAKYLQLVSEEYKLPIKTNCKVQSIKKEKTGY LLETTKGIIHAEYIIFAMGEFSFPNKSSIKGAYKNSLHYGEINSWIEIKGDKQTIIGGNE SAIDAAIELAKLGKRVTIYTDTLGLNIRDADPSKRLAPRTRQRFFDLRVNKKN >gi|307679307|gb|GL456420.1| GENE 16 13557 - 13631 97 24 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MILNVLDKKIKIIPSVYEYQNNSQ >gi|307679307|gb|GL456420.1| GENE 17 13609 - 14643 399 344 aa, chain - ## HITS:1 COG:aq_112 KEGG:ns NR:ns ## COG: aq_112 COG0004 # Protein_GI_number: 15605698 # Func_class: P Inorganic ion transport and metabolism # Function: Ammonia permease # Organism: Aquifex aeolicus # 1 302 41 353 423 139 32.0 8e-33 MWLMIFGVILYYVGLVNHRYIHHTLILGLVTIISGTLCWLFVGYSLSFFGNIQYSIFYSP LASSEIVSILIQLLFCLYSVIMIIGSVLERGNWKYIVLFVPLWIVFVYAPVCFSLWGHGN WLGKIGVLDYSGGLVVHTTAGIGSLVLAITSPIRLKNSLIFKSQEMIAFVGMLFITLGWF GFNMAPSGKIGEESIQIWLNTLISILGGSISWPFTQWILIKKVSIYSIMNGIIGGLVGST CSVGYISPAISLLISVIVCTLCPIVIHIMHLRIANFDDAADSFGMNAVGGIAGSILTGVM AEKGDFFLQLFGTFLISIWSLSLSLLIHYLLKKMVNDCDSQCIR >gi|307679307|gb|GL456420.1| GENE 18 14873 - 15277 192 134 aa, chain - ## HITS:1 COG:lin0431 KEGG:ns NR:ns ## COG: lin0431 COG5341 # Protein_GI_number: 16799508 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 6 130 7 131 140 76 37.0 1e-14 MCKKGLMKKGDIIVIIFLIAISFSPYFIFFHNNPFLPKSFDDVKYAVVKIDGKEIERINL DNPKEFIKTFYPSKGQYNTIEVKNGHVRVKKDNSPDQIAVKTGWISEPGQTSICIPHRFI LEIVQQYSKDYYIY >gi|307679307|gb|GL456420.1| GENE 19 15329 - 15715 388 128 aa, chain - ## HITS:1 COG:no KEGG:EF0545 NR:ns ## KEGG: EF0545 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 128 1 128 128 218 100.0 7e-56 MKKMNIIYPPLVEQSFQFYQDYEQERYDKSELYRIMVMKNIINENGTPTEEALKKGLVKD FYEEYDLSFEEFLKLYPFFNNYDPDYFQKIDGFWEVPVCLKEELILLLNDKDCAYDVRIQ IQQFLEER >gi|307679307|gb|GL456420.1| GENE 20 15728 - 15901 298 57 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29375162|ref|NP_814315.1| 50S ribosomal protein L32 [Enterococcus faecalis V583] # 1 57 1 57 57 119 100 2e-26 MAVPARRTSKTKKRLRRTHEKLKSPEISFDENLGDYRKSHHVSLKGYYGGKKVMDKK >gi|307679307|gb|GL456420.1| GENE 21 16252 - 17304 375 350 aa, chain + ## HITS:1 COG:SA0428 KEGG:ns NR:ns ## COG: SA0428 COG5438 # Protein_GI_number: 15926147 # Func_class: S Function unknown # Function: Predicted multitransmembrane protein # Organism: Staphylococcus aureus N315 # 8 342 14 367 370 157 30.0 3e-38 MKKFKFTLFSLLVIIFSGLLIQRFSGYFYTTPVGIVKSVKIIDSEQLLTVKLVNNTKKTV VVKVKFNGNESTNPVFNKNNQILLDNSTKKWEFISLKRDGYTFILVVSFISLVLGIAGKK GFFSLVGILFNIIFLFFLLWINQRNRSINLLLLISIYTIIAIIISTGTLYGLKKIDLRKV LATIFSVFLSYFITTITMKLLNDQGLRYEEIQFLTRPYRTVFLASLMLGGIGAALDNVVV IISSLDELVRHTPEINTKELIESGKNIASDTTTSMINVLLFAYLSSATPFFIFYLANGWD FVETFKMHLSLEIMRVLCGGLAILFTIPSSFLFFLLFKKLKKKGKTDECN >gi|307679307|gb|GL456420.1| GENE 22 17291 - 18055 345 254 aa, chain + ## HITS:1 COG:SA0427 KEGG:ns NR:ns ## COG: SA0427 COG5438 # Protein_GI_number: 15926146 # Func_class: S Function unknown # Function: Predicted multitransmembrane protein # Organism: Staphylococcus aureus N315 # 30 248 30 248 260 91 32.0 2e-18 MNVISLLVIIFIFISIIIFKNNSFYFISGLFLNIVIFIGYLIAISLHISVYLVTFVSFLL MTIVILYWINGRNAKTKLAFICVIFFLVTFTIVSLPLITALKTQGFSSEELIELANFDLN VDIPFSELNVSIILISFSGAVIDGSMAICSSTYEIYTKNPDLTFKELFNSSFNVVIEVLN STIYTLLFAFIASNFALVIYLQDLNYSFLELINSKIFVGELLVSILTGCAGILILPLSCL LGSWILKKRFHTLY >gi|307679307|gb|GL456420.1| GENE 23 18688 - 19170 368 160 aa, chain - ## HITS:1 COG:SP0758_3 KEGG:ns NR:ns ## COG: SP0758_3 COG2190 # Protein_GI_number: 15900652 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIA components # Organism: Streptococcus pneumoniae TIGR4 # 21 144 11 134 151 121 44.0 7e-28 MFNLFKNKKQEGISITAPCSGRIIPISEVNDPIFSKKVLGEGFAVVPEGNKIYAPLTGRI EAVFPTKHAISIKSDADIEYLIHIGIDTVELEGKPFSIFVNAGEKVTTETLLAEVDFDQI KQAGKDPSVIVVFTKPEQVNEVILNSYTTIYGDSCGKIIL >gi|307679307|gb|GL456420.1| GENE 24 19181 - 20683 1408 500 aa, chain - ## HITS:1 COG:SP1684_1 KEGG:ns NR:ns ## COG: SP1684_1 COG1263 # Protein_GI_number: 15901519 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Streptococcus pneumoniae TIGR4 # 1 419 1 419 422 481 59.0 1e-135 MFKKFSQLGRAFMLPIAILPVAGLLLGLGGALTNESAMNAYPILEQPWIHTVLSIMSYAG NAVFTNLALIFAIGIAVGLANGDKGTAGLAGGVSYLVYTATISGFLALFSAKDATLDTGV VGSIVIGGTVAFLHNRYRKIELPQFLGFFGGSRFIPIISSLAAIIIGSFFYLIWPPIQNG LAVVGEHIAQMGSLGTFLYGFLLRLTGAVGLHHTIYPLFWYTSLGGTESVAGVTVSGAQN IFFAQLADPNHTGLFTYGTRFFAGRFATMMFGLPAACYAMYRAIPKQNRKKNGGLYFSGG LTSFLTGITEPVEYMFLFVAPWLYIIHAFLDGLSFYFADILNIRVGNSFSGGLIDFLLFG VLQGNDKTNWLKLIPFGIAWAIVYFCVFTFFIKKFKVAIPGMGEELPTTTENKLNKKTSL NDEAQIIIKALGSKTNIESVEACATRLRVAVVDGRMVDKETIKQLGATAVFEVNGGIQAV FGGKADLLSQEINQILEIEN >gi|307679307|gb|GL456420.1| GENE 25 20676 - 21383 684 235 aa, chain - ## HITS:1 COG:SPy0251 KEGG:ns NR:ns ## COG: SPy0251 COG3010 # Protein_GI_number: 15674432 # Func_class: G Carbohydrate transport and metabolism # Function: Putative N-acetylmannosamine-6-phosphate epimerase # Organism: Streptococcus pyogenes M1 GAS # 3 228 7 232 234 305 68.0 7e-83 MDKAKFLEAISGGLIVSCQALPGEPFYTEEGGLMSYFALAAKNAGAVGIRANSVRDIKEI KEKVSLPIIGIIKRDYPPEEPFITATMREVDELVAIGVEVIALDCTLRKRHDGLSINTFI EKVKKKYPQQLLMADISTFEEGKNAYQAGVDFVGTTLSGYTKESKKQNGPDMKLIKQLVQ ENICVIAEGKIHTPEQARQIKKLGVAGIVVGGAITRPQEITKRFVDALNKEEKDV >gi|307679307|gb|GL456420.1| GENE 26 21540 - 22358 618 272 aa, chain + ## HITS:1 COG:L192289 KEGG:ns NR:ns ## COG: L192289 COG1737 # Protein_GI_number: 15673158 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 6 272 6 273 273 270 55.0 3e-72 MNYIYLINEHYPLLTKSERKVADFILNSGESIIYSTMNDIKTKANVGDATIIRFCQKLGF SGFSDLKIEIAKEDFSKKKEKPSSGKYHDEVAKSLIEVLQSTSCLINEEKLIKAIQLINQ ASSLYIFGVGSSGNTSLDLESMFLRVGIQAKAVLDPHYQAQVASLLTDRDLVIIFSLSGK TKDTYDSLKIAKNNGAKILAITNYIHSPIGKSADLVLQTAIEEFLNGGSLAGKISQLYIC DLLVHEYEQNNKINSLDLREKVLRSIIDKRIE >gi|307679307|gb|GL456420.1| GENE 27 22438 - 22644 142 68 aa, chain - ## HITS:1 COG:pli0059 KEGG:ns NR:ns ## COG: pli0059 COG1961 # Protein_GI_number: 18450341 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Listeria innocua # 1 66 81 146 199 94 74.0 5e-20 MKNKNVRLIITSLPIMAEAVGNPLFDRFIKDLIVQILAMIAEQERTESKRRQEQGIKIAK MNGVYQWL >gi|307679307|gb|GL456420.1| GENE 28 22657 - 22917 97 86 aa, chain - ## HITS:1 COG:pli0059 KEGG:ns NR:ns ## COG: pli0059 COG1961 # Protein_GI_number: 18450341 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Listeria innocua # 24 86 13 75 199 84 71.0 4e-17 MYDKTLGKRQNFESCICKSFIHWQNLERQIQELKKLGAKKIFVEKKSGASIEQRLIFTEA IYFVRESDIFMVEAIDRLGRNYDEII >gi|307679307|gb|GL456420.1| GENE 29 23133 - 23558 197 141 aa, chain + ## HITS:1 COG:pli0059 KEGG:ns NR:ns ## COG: pli0059 COG1961 # Protein_GI_number: 18450341 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Listeria innocua # 1 125 22 146 199 161 72.0 4e-40 MNKFGAKKIFIEKQSGATITHRPIFQKALDFVRDQDIFIVEAIDRLGRNYDEIIDSVNYL KKKNVRLIITSLPIMAEAIGNPLLDKFIKDLIIQILAMIAEQERTESKRRQAQGIKIAKD YNITRLTIYRIKKEIHELEIN >gi|307679307|gb|GL456420.1| GENE 30 23604 - 24269 257 221 aa, chain - ## HITS:1 COG:no KEGG:EF0533 NR:ns ## KEGG: EF0533 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 221 1 221 221 387 99.0 1e-106 MLDDLPGVADNAKKILFDMRCTTVIDDCNVHLRDVLNLLEDEMHSFRLSSIEANDLDKLY DTFYYYGKKEQLIEFLLDQMTNAINFKQADKDFLIYSWLVEKLTEEQICEMLARINENTQ YHWNNNLNSFVDEFVAYYKETNGIDLRINYLGAIYTNLKILSDEYTLSISDYELIFKFFE DIIESHSETIFDFQRKYKKDIETNFGNSLENFPKLNKLLFE >gi|307679307|gb|GL456420.1| GENE 31 24414 - 24536 97 40 aa, chain - ## HITS:1 COG:no KEGG:EF0532 NR:ns ## KEGG: EF0532 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 40 1 40 40 63 97.0 3e-09 MAERLLLFLISNYQLSTTLYPVKTSYDVFHFKHFCGLVYA >gi|307679307|gb|GL456420.1| GENE 32 24566 - 24982 387 138 aa, chain - ## HITS:1 COG:no KEGG:EF0531 NR:ns ## KEGG: EF0531 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 138 1 138 138 228 100.0 6e-59 MKFYWEINPEDLLKNGNYEKNNLSECAYNLMIMYNKYAEKGKKLQQSINSKNFKKNIEQL LEIEAILSEIQFYLEEINLESADTNNVISQIETEYLVDYYYKIGNADKEGNFFASLLRNK VCKQKQLRFGIFPERVII >gi|307679307|gb|GL456420.1| GENE 33 25112 - 26320 691 402 aa, chain - ## HITS:1 COG:CAC2608 KEGG:ns NR:ns ## COG: CAC2608 COG2207 # Protein_GI_number: 15895866 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Clostridium acetobutylicum # 291 389 180 278 284 77 42.0 6e-14 MNTDKEVLLKSLHVCLGIPILVFNEDYTLVEEYRSDRTISLFYDFPTFLKKVVKDKLKFD YITGNYNELFLLYTYNKKLFLLGPFRCNTIEKDKFYSMVQYKSIKHSDKESLYKLLNKLP LFSLGDIRDILILINYFFTGKIEDLFHKPLHDYEKKFSEDIQIERIDMLLSQNYDPEIYL FLYENKILEYVVNGNVQELSNMIFKLSNGVVPVVSGDNVRSEKNYSIVVFEKLAQAATNM GMDLINAYQSRDSFIRKNELCINLKEVLKVRDTAIVFYTSEIGKAKVRNLSPQISSIVQY IGLNMYTKITVRQIAQYFSMSEARLRTAFKKEMNISIHNYILRRKISEAKVMLKSNYPIN DISLLLGFSDTSHFTKVFKKITGTTPKKYQMSVDSKFTLNLD >gi|307679307|gb|GL456420.1| GENE 34 26520 - 27203 748 227 aa, chain - ## HITS:1 COG:BH2080 KEGG:ns NR:ns ## COG: BH2080 COG1404 # Protein_GI_number: 15614643 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus halodurans # 11 161 807 968 1052 69 34.0 4e-12 DNRSDADKYTPKGQKVTTELNKEPEASDGIKNKSDLPKGTMYVWKEKVDVGIPGNKKATV VVIYPDGSKEEVEVVISVVDKKAPNKPQVDPITDGDKIVTGKTEPNADVTVTLPDGSQYH GTADKSGYFKVNVPKLEAGTKVKVTSTDESGNTSEPTDVVVSSNELNGGKGNGTDSKTNN NQDKKQFLKTYPKTGEVDSNIYTIAGGLILLGTLGLLGYEKWKKEDE Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:42:31 2011 Seq name: gi|307679306|gb|GL456421.1| Enterococcus faecalis TX0411 genomic scaffold Scfld59, whole genome shotgun sequence Length of sequence - 1000 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 1000 460 ## COG3328 Transposase and inactivated derivatives Predicted protein(s) >gi|307679306|gb|GL456421.1| GENE 1 1 - 1000 460 333 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 3 329 64 390 391 316 48.0 4e-86 DDRTVKTEYGELHPQIPRDRNGEFKQQTVPAYRRTNDTLEETIIHLFRKGITMSEIADLI EKMYGHHYTPQTMSNITKSFTEEVTAFKGWELHDRYAAIYMDATYIPLKRKTVAKEAIHI AVGIRPDGSKEVLSYAIAPTESITIWEEILLDLQERGLKNVLLFITDGLKGMVGAISRFY PKARFQHCCVHVSRNISHKVRVDDCKEVCDDFKMVYQASSKEVALEARGAFAEKWKTSYP KVVESILSNDHLLTFYDFPLAIRKSIYSTNLIESFNKQIKKYSHRKEQFQNEESMERFLV SSFDTYNQKFLGRSHKGFQQAEGELEQMLSQLI Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:43:04 2011 Seq name: gi|307679305|gb|GL456422.1| Enterococcus faecalis TX0411 genomic scaffold Scfld60, whole genome shotgun sequence Length of sequence - 109463 bp Number of predicted genes - 111, with homology - 105 Number of transcription units - 53, operones - 29 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 3/0.000 - CDS 86 - 1279 842 ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis 2 1 Op 2 1/0.059 - CDS 1316 - 2503 880 ## COG1004 Predicted UDP-glucose 6-dehydrogenase - Prom 2545 - 2604 9.4 - Term 2764 - 2799 0.2 3 2 Tu 1 1/0.059 - CDS 2806 - 3186 228 ## COG3316 Transposase and inactivated derivatives - Prom 3222 - 3281 3.2 4 3 Tu 1 . - CDS 3301 - 3408 163 ## COG3316 Transposase and inactivated derivatives - Prom 3430 - 3489 7.3 5 4 Op 1 . - CDS 3528 - 3863 257 ## Lbuc_0635 filamentation induced by cAMP protein Fic 6 4 Op 2 . - CDS 3939 - 4238 360 ## NMC1958 hypothetical protein 7 4 Op 3 . - CDS 4287 - 4886 416 ## COG0582 Integrase - Prom 4912 - 4971 8.2 + Prom 5305 - 5364 6.5 8 5 Op 1 1/0.059 + CDS 5411 - 6349 824 ## COG1893 Ketopantoate reductase 9 5 Op 2 . + CDS 6375 - 7412 981 ## COG3641 Predicted membrane protein, putative toxin regulator 10 5 Op 3 . + CDS 7437 - 7550 78 ## + Term 7552 - 7588 5.0 11 6 Tu 1 . - CDS 7717 - 8022 76 ## COG3328 Transposase and inactivated derivatives - Prom 8119 - 8178 4.3 12 7 Tu 1 . - CDS 8350 - 8604 141 ## COG3328 Transposase and inactivated derivatives - Prom 8711 - 8770 5.9 + Prom 8699 - 8758 9.9 13 8 Tu 1 . + CDS 8787 - 10094 907 ## COG3464 Transposase and inactivated derivatives - TRNA 10292 - 10364 81.5 # Lys CTT 0 0 + Prom 10216 - 10275 6.3 14 9 Op 1 . + CDS 10441 - 10671 224 ## EF0480 excisionase, putative 15 9 Op 2 . + CDS 10715 - 11884 823 ## COG0582 Integrase + Term 11941 - 11970 -0.2 - Term 11869 - 11928 6.1 16 10 Op 1 . - CDS 12161 - 12298 239 ## EF0477 hypothetical protein 17 10 Op 2 22/0.000 - CDS 12305 - 14455 2048 ## COG0370 Fe2+ transport system protein B 18 10 Op 3 . - CDS 14452 - 14925 609 ## COG1918 Fe2+ transport system protein A - Prom 15118 - 15177 5.8 + Prom 15185 - 15244 7.1 19 11 Op 1 11/0.000 + CDS 15439 - 15663 340 ## COG0695 Glutaredoxin and related proteins 20 11 Op 2 18/0.000 + CDS 15665 - 16042 311 ## COG1780 Protein involved in ribonucleotide reduction 21 11 Op 3 24/0.000 + CDS 16023 - 18182 2196 ## COG0209 Ribonucleotide reductase, alpha subunit + Term 18198 - 18234 3.3 + Prom 18217 - 18276 4.7 22 11 Op 4 . + CDS 18383 - 19348 1101 ## COG0208 Ribonucleotide reductase, beta subunit + Term 19355 - 19392 6.0 - Term 19335 - 19385 13.1 23 12 Op 1 8/0.000 - CDS 19388 - 20674 995 ## COG1512 Beta-propeller domains of methanol dehydrogenase type 24 12 Op 2 . - CDS 20719 - 21288 731 ## COG1704 Uncharacterized conserved protein - Prom 21317 - 21376 6.9 - Term 21381 - 21420 5.1 25 13 Tu 1 . - CDS 21447 - 22148 1062 ## COG1285 Uncharacterized membrane protein - Prom 22170 - 22229 7.0 - Term 22175 - 22235 20.1 26 14 Op 1 . - CDS 22244 - 22945 1042 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase - Prom 22977 - 23036 9.1 - Term 23012 - 23058 10.8 27 14 Op 2 . - CDS 23075 - 24283 1525 ## COG1316 Transcriptional regulator - Prom 24362 - 24421 5.6 28 15 Tu 1 . - CDS 24433 - 25413 1076 ## COG0253 Diaminopimelate epimerase - Prom 25455 - 25514 3.0 - Term 25495 - 25544 12.4 29 16 Tu 1 . - CDS 25561 - 26169 761 ## PROTEIN SUPPORTED gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent - Prom 26217 - 26276 5.8 + Prom 26152 - 26211 7.4 30 17 Tu 1 . + CDS 26363 - 27172 827 ## EF0462 hypothetical protein + Term 27177 - 27211 6.2 - Term 27165 - 27199 6.2 31 18 Op 1 . - CDS 27206 - 27625 572 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 32 18 Op 2 . - CDS 27635 - 28624 977 ## COG1680 Beta-lactamase class C and other penicillin binding proteins 33 18 Op 3 2/0.000 - CDS 28637 - 29527 1063 ## COG2103 Predicted sugar phosphate isomerase 34 18 Op 4 . - CDS 29542 - 30393 605 ## COG1737 Transcriptional regulators 35 18 Op 5 1/0.059 - CDS 30410 - 30886 708 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 36 18 Op 6 13/0.000 - CDS 30917 - 31735 1014 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 37 18 Op 7 . - CDS 31728 - 32531 972 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC - Prom 32568 - 32627 6.9 + Prom 32527 - 32586 9.1 38 19 Tu 1 . + CDS 32692 - 33471 646 ## COG0730 Predicted permeases + Term 33506 - 33539 -0.3 39 20 Tu 1 . - CDS 33540 - 33941 597 ## COG1764 Predicted redox protein, regulator of disulfide bond formation - Prom 33996 - 34055 8.2 + Prom 34051 - 34110 6.3 40 21 Tu 1 . + CDS 34162 - 35688 1474 ## COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases + Term 35804 - 35848 7.4 + Prom 35854 - 35913 7.2 41 22 Tu 1 . + CDS 35940 - 36638 813 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase + Term 36643 - 36695 13.1 - Term 36622 - 36693 9.4 42 23 Op 1 3/0.000 - CDS 36695 - 37798 980 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 43 23 Op 2 15/0.000 - CDS 37799 - 38623 685 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 44 23 Op 3 10/0.000 - CDS 38611 - 40344 1633 ## COG1165 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 45 23 Op 4 . - CDS 40344 - 41711 1487 ## COG1169 Isochorismate synthase 46 23 Op 5 2/0.000 - CDS 41708 - 43165 1296 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 47 23 Op 6 . - CDS 43170 - 43985 1039 ## COG0447 Dihydroxynaphthoic acid synthase - Prom 44054 - 44113 7.0 + Prom 44058 - 44117 11.4 48 24 Tu 1 . + CDS 44240 - 44530 192 ## COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism - Term 44502 - 44554 6.0 49 25 Tu 1 . - CDS 44600 - 45199 809 ## EF0443 LysM domain-containing protein - Prom 45391 - 45450 7.0 + Prom 45592 - 45651 13.8 50 26 Op 1 . + CDS 45705 - 45815 66 ## + Prom 45821 - 45880 4.1 51 26 Op 2 . + CDS 45950 - 46024 67 ## 52 26 Op 3 . + CDS 46017 - 47498 1524 ## COG3104 Dipeptide/tripeptide permease + Term 47511 - 47550 5.2 + Prom 47507 - 47566 5.5 53 27 Tu 1 . + CDS 47605 - 47805 334 ## EF0439 immunity protein PlnM, putative + Term 47806 - 47841 -0.5 - Term 47829 - 47874 6.2 54 28 Op 1 . - CDS 47889 - 48725 859 ## COG1082 Sugar phosphate isomerases/epimerases 55 28 Op 2 . - CDS 48727 - 49647 813 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 49680 - 49739 3.9 56 29 Op 1 4/0.000 - CDS 49857 - 50147 329 ## COG3254 Uncharacterized conserved protein 57 29 Op 2 5/0.000 - CDS 50165 - 51013 1100 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases 58 29 Op 3 6/0.000 - CDS 51041 - 52327 1376 ## COG4806 L-rhamnose isomerase 59 29 Op 4 . - CDS 52324 - 53826 1463 ## COG1070 Sugar (pentulose and hexulose) kinases - Prom 53850 - 53909 8.8 + Prom 53795 - 53854 7.7 60 30 Op 1 . + CDS 53955 - 54395 422 ## EF0432 AraC family transcriptional regulator 61 30 Op 2 . + CDS 54471 - 54827 290 ## COG2207 AraC-type DNA-binding domain-containing proteins + Term 54832 - 54875 8.2 - Term 54820 - 54862 9.6 62 31 Op 1 11/0.000 - CDS 54975 - 56270 1089 ## PROTEIN SUPPORTED gi|90020581|ref|YP_526408.1| ribosomal protein L16 63 31 Op 2 . - CDS 56306 - 56587 145 ## PROTEIN SUPPORTED gi|239995925|ref|ZP_04716449.1| ribosomal protein S3 64 31 Op 3 11/0.000 - CDS 56572 - 56781 117 ## PROTEIN SUPPORTED gi|90020580|ref|YP_526407.1| ribosomal protein S3 65 31 Op 4 . - CDS 56796 - 57806 591 ## PROTEIN SUPPORTED gi|90020579|ref|YP_526406.1| ribosomal protein L22 66 31 Op 5 1/0.059 - CDS 57824 - 58930 1211 ## COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins - Prom 59013 - 59072 4.0 - Term 59097 - 59155 17.1 67 32 Op 1 9/0.000 - CDS 59160 - 59948 204 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 68 32 Op 2 . - CDS 59970 - 60809 1007 ## COG3717 5-keto 4-deoxyuronate isomerase 69 32 Op 3 8/0.000 - CDS 60822 - 61829 1043 ## COG0524 Sugar kinases, ribokinase family 70 32 Op 4 1/0.059 - CDS 61834 - 62481 882 ## COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase - Prom 62534 - 62593 17.0 - Term 62574 - 62639 18.7 71 33 Op 1 . - CDS 62642 - 63394 929 ## COG1414 Transcriptional regulator - Prom 63414 - 63473 7.0 72 33 Op 2 . - CDS 63525 - 63992 542 ## EF0421 MerR family transcriptional regulator - Prom 64061 - 64120 8.9 + Prom 64034 - 64093 6.5 73 34 Op 1 . + CDS 64135 - 65610 1703 ## COG0477 Permeases of the major facilitator superfamily 74 34 Op 2 . + CDS 65610 - 66314 649 ## EF0419 hypothetical protein - Term 66309 - 66362 5.3 75 35 Op 1 36/0.000 - CDS 66369 - 67598 276 ## PROTEIN SUPPORTED gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 76 35 Op 2 24/0.000 - CDS 67595 - 68302 263 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 77 35 Op 3 . - CDS 68315 - 69469 1395 ## COG0845 Membrane-fusion protein - Prom 69717 - 69776 10.2 + Prom 69598 - 69657 8.8 78 36 Op 1 . + CDS 69814 - 70452 483 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases + Term 70468 - 70500 1.1 79 36 Op 2 . + CDS 70531 - 71646 957 ## COG0665 Glycine/D-amino acid oxidases (deaminating) + Term 71666 - 71717 -0.9 - Term 71611 - 71668 10.6 80 37 Op 1 15/0.000 - CDS 71713 - 72867 1513 ## COG0246 Mannitol-1-phosphate/altronate dehydrogenases 81 37 Op 2 . - CDS 72882 - 73319 587 ## COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain 82 37 Op 3 . - CDS 73334 - 75106 2070 ## COG2213 Phosphotransferase system, mannitol-specific IIBC component - Prom 75278 - 75337 5.9 83 38 Tu 1 . + CDS 75352 - 75447 159 ## + Term 75489 - 75524 4.3 - Term 75468 - 75523 6.1 84 39 Op 1 5/0.000 - CDS 75717 - 76151 495 ## COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain 85 39 Op 2 4/0.000 - CDS 76162 - 78195 1811 ## COG3711 Transcriptional antiterminator 86 39 Op 3 . - CDS 78186 - 79928 1414 ## COG2213 Phosphotransferase system, mannitol-specific IIBC component - Prom 79976 - 80035 6.1 + Prom 79965 - 80024 11.4 87 40 Tu 1 . + CDS 80112 - 80945 634 ## COG0561 Predicted hydrolases of the HAD superfamily - Term 80898 - 80970 15.2 88 41 Op 1 1/0.059 - CDS 80988 - 81623 813 ## COG0778 Nitroreductase 89 41 Op 2 . - CDS 81628 - 82062 509 ## COG1846 Transcriptional regulators - Prom 82100 - 82159 4.2 - Term 82142 - 82202 10.1 90 42 Tu 1 . - CDS 82214 - 83617 1700 ## COG1757 Na+/H+ antiporter - Prom 83781 - 83840 5.7 - Term 84061 - 84126 28.4 91 43 Op 1 3/0.000 - CDS 84160 - 84801 884 ## COG2039 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) 92 43 Op 2 6/0.000 - CDS 84817 - 85761 1050 ## COG3817 Predicted membrane protein 93 43 Op 3 . - CDS 85763 - 86443 785 ## COG3819 Predicted membrane protein 94 43 Op 4 . - CDS 86458 - 86559 80 ## - Prom 86792 - 86851 9.7 + Prom 86498 - 86557 5.7 95 44 Op 1 . + CDS 86636 - 87151 463 ## EF0397 hypothetical protein 96 44 Op 2 . + CDS 87167 - 88351 1196 ## COG0628 Predicted permease + Term 88357 - 88422 11.2 - Term 88353 - 88397 11.5 97 45 Tu 1 . - CDS 88403 - 89530 1413 ## COG0620 Methionine synthase II (cobalamin-independent) - Prom 89551 - 89610 10.3 - Term 89877 - 89912 5.1 98 46 Tu 1 . - CDS 89938 - 91305 1669 ## COG3883 Uncharacterized protein conserved in bacteria 99 47 Tu 1 . - CDS 91762 - 94056 1471 ## EF0392 hypothetical protein - Prom 94110 - 94169 3.0 100 48 Tu 1 . - CDS 94262 - 94417 87 ## - Prom 94437 - 94496 2.2 - Term 94442 - 94490 13.6 101 49 Op 1 . - CDS 94506 - 95729 1751 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 102 49 Op 2 . - CDS 95754 - 97109 1735 ## EF0389 hypothetical protein - Term 97122 - 97174 1.1 103 49 Op 3 . - CDS 97175 - 98236 1325 ## COG2055 Malate/L-lactate dehydrogenases - Prom 98264 - 98323 1.6 104 50 Op 1 . - CDS 98326 - 99546 1098 ## COG1301 Na+/H+-dicarboxylate symporters 105 50 Op 2 1/0.059 - CDS 99553 - 100491 1256 ## COG0549 Carbamate kinase - Prom 100541 - 100600 2.2 106 51 Op 1 . - CDS 100626 - 101879 1614 ## COG0477 Permeases of the major facilitator superfamily 107 51 Op 2 . - CDS 101889 - 102722 587 ## EF0384 hypothetical protein 108 51 Op 3 . - CDS 102715 - 105726 3779 ## COG0074 Succinyl-CoA synthetase, alpha subunit - Prom 105789 - 105848 6.7 + Prom 105764 - 105823 6.1 109 52 Op 1 . + CDS 105849 - 107441 1023 ## COG2508 Regulator of polyketide synthase expression 110 52 Op 2 . + CDS 107416 - 108228 641 ## COG0657 Esterase/lipase + Term 108232 - 108283 16.2 - Term 108223 - 108266 11.9 111 53 Tu 1 . - CDS 108267 - 109460 1388 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases Predicted protein(s) >gi|307679305|gb|GL456422.1| GENE 1 86 - 1279 842 397 aa, chain - ## HITS:1 COG:mlr6163 KEGG:ns NR:ns ## COG: mlr6163 COG1215 # Protein_GI_number: 13475150 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Mesorhizobium loti # 49 397 50 395 424 238 34.0 1e-62 MLNFLSIFLLVYGVLAISHIVFQIILCHSDHRRQNKKSFKDFHSNYQASVSVIVPAYNEV PQILKNCIDSIVAQKIPDIEIIVVDDGSKNREELIEKVYDTYQSNQNVKILLPEENKGKR HCQKLGFDIAKGDIIVTVDSDTLLHDEDAVEKLIQRFANKKVGAVTGDVRVENKNKNILT RLITYRYWSAFHQERAAQSRFHVVMCCSGPFSAYRKEIIEEIKEKYITQYFLGENCTYGD DRHLTNLVLEAGYEVAFQSDSQVYTFVPETIGGYIKQQVRWNKSFYREMLWTIKFAHKHH FYMMYDLVMQFILPFMLVVSLIAMIEQTILYQNFGHLYQYLIVLVLIAIFRSLYGIYRTK DIGFLLFVIYGFMHVLLLLPVRFYALLTLKSTKWGTR >gi|307679305|gb|GL456422.1| GENE 2 1316 - 2503 880 395 aa, chain - ## HITS:1 COG:STM2080 KEGG:ns NR:ns ## COG: STM2080 COG1004 # Protein_GI_number: 16765410 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted UDP-glucose 6-dehydrogenase # Organism: Salmonella typhimurium LT2 # 8 395 2 388 388 440 55.0 1e-123 MGINGKKRISVFGLGYVGLANSLLLGQHEDVVGYDIDSHKITLLEQGCSPLIDDYIESFI KEKRSNVSYTSDFEQAVLHGEYLVIATPTDYDESTDYFNTSSIEEVIEKAIQIKADAKFI IKSTIPIGYVATLKKQFPSVQTIIFCPEFLREGTALYDNLYPSRIIIGDTTDAAKEIGAL FLRNVWDKEVPVLYTSENEAEAIKLFANTYLALRVAYFNELDTFAQINGLESRQIIEGMG LDARIGSHYNNPSFGYGGYCLPKDTKQLKQNYRQVPERLISAIVASNDVRKDFVADKIMA KNPKTVGIYRLTMKHGSDNFRYSAIQDVMTRLQSKGVEIVIYEPTLSVPNFKGIQLVHSL EDFKQAAEIIVANRWDESLRDVAHKVYTHDVFVRD >gi|307679305|gb|GL456422.1| GENE 3 2806 - 3186 228 126 aa, chain - ## HITS:1 COG:pli0049 KEGG:ns NR:ns ## COG: pli0049 COG3316 # Protein_GI_number: 18450331 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Listeria innocua # 1 121 75 195 226 225 98.0 1e-59 MDETYIKIKGRWHYLYRAIDADGLTLDIWLRKKWDTQAAYAFLKRLHKQFGEPKAIVTDK APSLGSALRKLQSVGLYTKTEHRTVKYLNNLIEQDHRPIKRRNKFYQSLRTASSTIKGME TPSRNI >gi|307679305|gb|GL456422.1| GENE 4 3301 - 3408 163 35 aa, chain - ## HITS:1 COG:pli0049 KEGG:ns NR:ns ## COG: pli0049 COG3316 # Protein_GI_number: 18450331 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Listeria innocua # 1 35 1 35 226 67 100.0 9e-12 MNHFKGKQFKKDVIIVAVGYYLRYNLSYREVQELL >gi|307679305|gb|GL456422.1| GENE 5 3528 - 3863 257 111 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0635 NR:ns ## KEGG: Lbuc_0635 # Name: not_defined # Def: filamentation induced by cAMP protein Fic # Organism: L.buchneri # Pathway: not_defined # 5 105 120 217 218 77 39.0 1e-13 MLTEDEVQNQYDEIMNRDISETEKALRLFLFISKNQIFWDGNKITALLTTNKIMFDWDLG LLSIPETVFEKFNVLLSIYYNSNEDIDVEKILDFMYSNCIFGINYLRKNKL >gi|307679305|gb|GL456422.1| GENE 6 3939 - 4238 360 99 aa, chain - ## HITS:1 COG:no KEGG:NMC1958 NR:ns ## KEGG: NMC1958 # Name: not_defined # Def: hypothetical protein # Organism: N.meningitidis_FAM18 # Pathway: not_defined # 9 98 2 94 240 70 40.0 2e-11 MNEEKHPTFPDKYHLSRKESVYLLKKNIVELVYNAGEFEGLNTTLLQTEEIIKYNRADNV AVDAVLTVVILKRGFELLLNDVQEPLLETSKRINRIVAA >gi|307679305|gb|GL456422.1| GENE 7 4287 - 4886 416 199 aa, chain - ## HITS:1 COG:CAC1595 KEGG:ns NR:ns ## COG: CAC1595 COG0582 # Protein_GI_number: 15894873 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Clostridium acetobutylicum # 4 191 3 178 186 98 39.0 8e-21 MKSVEPIRDKKKIDAMKAILASGKYGQRNLVLFSIGINTAYRISDLRQLKLSDVVEISRG RVIVKERLAMKEQKTAKHNSVFISNKLRKVILDYVQSEFLEQLQVQDFSNYLFPSRKGAD TPLTRQSLWRIIHEAGTAVGLKEIGPHSMRKTFGYFLYKQGTKTEIIQSLLNHSSQRETL RYIGITQEDKDTAVKSLDL >gi|307679305|gb|GL456422.1| GENE 8 5411 - 6349 824 312 aa, chain + ## HITS:1 COG:L157055 KEGG:ns NR:ns ## COG: L157055 COG1893 # Protein_GI_number: 15673305 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate reductase # Organism: Lactococcus lactis # 1 312 1 312 312 514 80.0 1e-145 MKIAIAGAGAMGSRFGLMLKQGGNDVLLIDGWQEHINAIKENGLKANYNGEEITVKVPIV NQNEVPTGEQFDLIILFTKAMQLEKMLQDVKPLIADHTEVLCLLNGIGHEDVIEKFVPME KIFIGNTMWTAGLEGPGKAKLFGSGSVELQNLGIGQEESAKKLAETLSASGLNAKYSDNI HYSIYRKACVNGTMNGLCTILDVNMAGLGATKPAHDMVVTIVNEFAAVAAKENVNLDIPE VIEHVETCFDPTTIGMHFPSMHQDLIKNNRLTEIDYINGAISRKGKKYGVVTPYCDFLTQ LVHSKEEILGAK >gi|307679305|gb|GL456422.1| GENE 9 6375 - 7412 981 345 aa, chain + ## HITS:1 COG:SPy0851 KEGG:ns NR:ns ## COG: SPy0851 COG3641 # Protein_GI_number: 15674884 # Func_class: R General function prediction only # Function: Predicted membrane protein, putative toxin regulator # Organism: Streptococcus pyogenes M1 GAS # 3 345 5 352 352 268 53.0 2e-71 MEEKLTPKIFLNKVLAGTATGIIVGLIPNAVLAAILKLFGENTLAVTITQMAVIFQLATP LLIGALIAVQFGFKPMQMLVVAGAAFVGSGVVKFNPDTATYIGAGTGDIINTMITASIAV GMILLIGEKFGSVAIVATPIVVGIGAGLIGYYLYPYVTKITAAIGDLINTFTTLQPILMS ILIACSFAFLIISPISTVAIGMAIQLNGVSAGAAAMGVAATTVVLVVNSWKVNKPGVTLA IALGAMKMMMPNLFRKPIILVPCLFTAIISAIPVALFSVSGTPASAGFGLVGLVGPLASL DAGLSIILLLISWFVVPIVAAFVGQILFEKILKLYDRKDVFEFLG >gi|307679305|gb|GL456422.1| GENE 10 7437 - 7550 78 37 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLTLFCAIEVGESQRKEKGTLNSVFLVNSTMKYLNTL >gi|307679305|gb|GL456422.1| GENE 11 7717 - 8022 76 101 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 2 99 293 390 391 100 55.0 6e-22 MIEKWQKTYPKVTQSLIKNQDLLTFYEFPPGIRRSIYSTNLIESFNKQIKKYSRRKEQFQ NEESLERFLVSIFDTYNQKFLNRSHKGFQQVTDTLASMFTE >gi|307679305|gb|GL456422.1| GENE 12 8350 - 8604 141 84 aa, chain - ## HITS:1 COG:MT3742 KEGG:ns NR:ns ## COG: MT3742 COG3328 # Protein_GI_number: 15843250 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mycobacterium tuberculosis CDC1551 # 3 77 311 385 409 68 38.0 3e-12 MHILENGFEDAIQILSFPENIRRRIRTTNVLERLNEEIRRRERVIRIFPNINSITRIIGT LLMEKDTEWLASPRKYLEFNSNNI >gi|307679305|gb|GL456422.1| GENE 13 8787 - 10094 907 435 aa, chain + ## HITS:1 COG:FN0599 KEGG:ns NR:ns ## COG: FN0599 COG3464 # Protein_GI_number: 19703934 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 15 421 7 410 428 222 31.0 9e-58 MSITKNIKCTDENTSKSIKQILNIKDSHISFSKDAISKESIHGRMANVFTGLLTGEAPRC EYCGFDSVIRHSYQDSWIQLLPYQEVPTYLHLYKQRFRCTRCRHTFSAKTYYVAENCYIS QALKFAIAVDLKKKISMKDIAQRYFVSTKTVERVLDSFFEEPRKKPNYLPKHLLIDEFKG TSDCEGAMCFIISDADTGKIFDILDDRRNFKLRAYFQRFTLKARKRVTHIVMDMNASYDA VTKEVFPNARISIDRFHVIQQITRAFNKQRIQTMNQLKKSDPQAQKDYRKLKKYWRTILK KNAKLNYTSFKQFPLFHRKYLTESEVLDYLLSIDDQLRQSYEVYQELLAAFDAKDFTEFF DLIESLPHSMNEGFKKAIRYLRKHKEAITNSFKISLFKRKTGGKEQPYQSNQKNSFWIPD FPSPSDACPHPAKYL >gi|307679305|gb|GL456422.1| GENE 14 10441 - 10671 224 76 aa, chain + ## HITS:1 COG:no KEGG:EF0480 NR:ns ## KEGG: EF0480 # Name: not_defined # Def: excisionase, putative # Organism: E.faecalis # Pathway: not_defined # 1 76 1 76 76 121 100.0 1e-26 MDFQDYEKIFESYPSILKITDLTKMLNIGKNKAYNLLKDKSIENIKIGARYKIPKKAVIE YILKIQDEGKNHAIIE >gi|307679305|gb|GL456422.1| GENE 15 10715 - 11884 823 389 aa, chain + ## HITS:1 COG:mlr0475 KEGG:ns NR:ns ## COG: mlr0475 COG0582 # Protein_GI_number: 13470699 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Mesorhizobium loti # 139 385 147 388 399 120 31.0 5e-27 MKLRANIIEKRGTLQVIVSYKDSNGKIRQKWKDTKLKKKGNKKRAEKIRDEFLLELESQL AMECKCANPDLLFYDYLLNYLEVSKKQVAFNTYVGYKHYVHNRIYKFFYPKKIKLNRLKP YHLQDFYQYMLNDDCTANTVIHYHAFIRKALQEAVITELISTNVADKVRKPKKKQFVSQV YNQHEILKLLDILSEEKLYLVVLLTAFYGLRRSEVLGLKWSAIDFLNKKIMINHVIIENP ENMSQLIKKDQTKNSSSYRTLPLVETIERALVNQAKWQQDNRILLGEDYILKDSEYVFTM EDGRLMKPQYVTHRLSKLIKKNGLKKIRFHDLRHSNASIMLDSGQNMKSIQEWLGHASYS TTANLYTHLTAGVKERAAEALENAFGFKE >gi|307679305|gb|GL456422.1| GENE 16 12161 - 12298 239 45 aa, chain - ## HITS:1 COG:no KEGG:EF0477 NR:ns ## KEGG: EF0477 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 45 1 45 45 75 100.0 6e-13 MATIILSILIFGTAGIITYRRIKKGESCEDCQTACPVKKEQSSQE >gi|307679305|gb|GL456422.1| GENE 17 12305 - 14455 2048 716 aa, chain - ## HITS:1 COG:L190009 KEGG:ns NR:ns ## COG: L190009 COG0370 # Protein_GI_number: 15672169 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein B # Organism: Lactococcus lactis # 5 701 4 702 709 819 56.0 0 MTQQIALAGNPNSGKTTTFNMLTGANQYVGNWPGVTVERKEGVAKKDKTLIIQDLPGIYS LSPYTPEEIVARDYLLEDQPSVILNILDVTNLERNLYLTTQLIETGLPVVCALNMMDLLE KNGQTLNSEKLSYGLGVPVVEISALKNRGLDHALKQSKQRANAIETEVIYPSYDNRLEAA LAEIVDILGNTVPETQQRWYSLKLFERDVRTKEQLLLSSFQEKEIEEVIQITEKIFQDES EAIIINERYAFIARLIALCATKKTEMTFTHSDKIDRVVTNRWLALPIFAFVMWLVYYLSI QTVGTMGTDWLNDVFFGEWVPQFVGNWLAQWQVAPWMQSLILDGIIAGVGAVLGFLPQLA VLFLCLGFLEDCGYMARIAFVMDRLFRKFGLSGKSFIPMLIATGCGVPGVMASRTIENER DRRMTIMVTTFMPCSAKLPIIALIAGAFFPNQSWVSPSAYFLGVASIVLSGIALKKTKHF SGDPAPFIMELPAYHLPQLRSVVRHAYERCRSFVKKAGTIIFVSSILIWFMSHYSVTFQP VPESQSILAFLGKGLAVLFIPLGWGNWQGAVATITGLIAKENIIGTLGILFGNVKDVSEN GVEVWGALQHTFTPVAAYSFLTFNLLCAPCFAAIGAIRREMGDLKWTLGAIGYQCGLAYM VSFVIYQLGHVLVEKGTLTLGTFLAMGVVLAGFYFLIRKPKPGKESVQAITSLERG >gi|307679305|gb|GL456422.1| GENE 18 14452 - 14925 609 157 aa, chain - ## HITS:1 COG:L192240 KEGG:ns NR:ns ## COG: L192240 COG1918 # Protein_GI_number: 15672170 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein A # Organism: Lactococcus lactis # 1 151 1 148 152 102 36.0 4e-22 MITLAQAEVGKVYTVESVQADVQTKKHLNNLGVVAGQAVVLVNYQNQNGIVLLHNSRIAL TDTILQAIHVEERSANEKVWVSLDTLKVGERATIVGIHGQGAVKRRLMDMGLTKGTVIFI RKVAPLADPIEINVRGYELTLRKSEAELILVEKEESE >gi|307679305|gb|GL456422.1| GENE 19 15439 - 15663 340 74 aa, chain + ## HITS:1 COG:SP1178 KEGG:ns NR:ns ## COG: SP1178 COG0695 # Protein_GI_number: 15901043 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutaredoxin and related proteins # Organism: Streptococcus pneumoniae TIGR4 # 3 73 2 72 72 85 53.0 2e-17 MNVKIFSKNNCIQCKMAKRFLSENNIAFEEINIDAQPDAIDWLKEQGFQSVPVITSEATT VVGFRPDQLKQLAS >gi|307679305|gb|GL456422.1| GENE 20 15665 - 16042 311 125 aa, chain + ## HITS:1 COG:L4702 KEGG:ns NR:ns ## COG: L4702 COG1780 # Protein_GI_number: 15672958 # Func_class: F Nucleotide transport and metabolism # Function: Protein involved in ribonucleotide reduction # Organism: Lactococcus lactis # 1 121 1 129 140 112 43.0 1e-25 MKLVYFSVTGQTRRFIKKLDLPAYELEPANPFFEINEPFILVIPTYDAEITEVVNDFLDY KSNQELLVGVAGGGNRNFAELFVYTAKDIARDYHVPLLYSFEFSGTDEDVETFKKVVEEI ESKRN >gi|307679305|gb|GL456422.1| GENE 21 16023 - 18182 2196 719 aa, chain + ## HITS:1 COG:SP1179 KEGG:ns NR:ns ## COG: SP1179 COG0209 # Protein_GI_number: 15901044 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 719 1 719 719 1144 77.0 0 MSLKEIKDVSYFKLNNEINRPVDGQIPLNKDKEALAAFFKENVEPNTRKFSSAEEKINFL MKEDFIETEFIEKYSMDFIEKLYAFLDEQHFQFKSFMAAYKFYSQYALKNNAGTEYLETY EDRVAFNALYFADGDEELALTLADEMIHQRYQPATPSFLNAGRKRRGELVSCFLVQVTDD MNSIGRSINSALQLSRIGGGVGITLSNLREAGAPIKGYDGAASGVVPVMKLFEDSFSYSN QLGQRQGAGVVYLNVFHPDIEMFLSAKKENADEKIRVKTLSLGVIVPDKFYELTRNNEDM YLFSPYSVEREYGVPYSYVDITKEYDNLVANPNIRKRKIKARDLENEISKLQQESGYPYI INIDTANKNNPIDGKIIMSNLCSEILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLM ESPDFGKSVRAMTRALTFVTDASEIDVVPTIQNGNRLSHTIGLGAMGLHTFFAKNHMEYG SEESLDFTDIYFMLLNYWTLMESNQIAKERNQVFHNFEKSDYASGAYFDKYIEGNFTPKF DKVKEIFKDIQIPTAEDWAALRDAVKKDGLYHQNRLAVAPNGSISYINDTSASIHPITRM IEERQEKKIGKIYYPAPYLANDTIPYYTSAYDMDMRKVIDVYATAQQHVDQGMSLTLFMR SEIPEGLYEWKETPKQTTRDLNILRHYAFNKGIKSIYYIRTFTDDAEEIGSNQCESCVI >gi|307679305|gb|GL456422.1| GENE 22 18383 - 19348 1101 321 aa, chain + ## HITS:1 COG:SP1180 KEGG:ns NR:ns ## COG: SP1180 COG0208 # Protein_GI_number: 15901045 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, beta subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 319 1 319 320 529 85.0 1e-150 MATYYEAINWNAIEDVIDKSTWEKLTEQFWLDTRIPLSNDLDDWRTLSDLEKTTVGYVFG GLTLLDTVQSESGMDQLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIDDI FEWTNTNKHLQYKAERINEIYKNGTPLEKKIASVFLETFLFYSGFYTPLYYLGNNKLANV AEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQDKLKDWMYNLLYELYENEERYTEELY DDLGWTEEVKTFLRYNANKALMNLGMDPLFADTANDVNPIVMNGISTGTSNHDFFSQVGN GYLLGTVEAMKDDDYLYGLDK >gi|307679305|gb|GL456422.1| GENE 23 19388 - 20674 995 428 aa, chain - ## HITS:1 COG:BMEI0229 KEGG:ns NR:ns ## COG: BMEI0229 COG1512 # Protein_GI_number: 17986513 # Func_class: R General function prediction only # Function: Beta-propeller domains of methanol dehydrogenase type # Organism: Brucella melitensis # 118 262 28 170 253 91 34.0 3e-18 MDKKVEKIQEKVRLFYKKHQRNTTIVVVISLSMILILGMAAWYEGKGISYEAKQTALREK QHALQKKRDDILAGKMTEASTQTTINNFSKQEITGENELVTITGTNGQLNINDANIYVSD NAGIVSNQLKQKMFQLNQQLLENANGAQFMLITVPALPSGESVESYSNKIANQLGVGDRE KNNGVVFLMAIEDRESRLEVGYGLESILTDSCADDIINNEEVKEAFRDEDYNTGLNKIID QVSAAINSKTAQVDNELTNIQTELNTNTMKRNVLLMASIAGMLICAVYILQILRTRKLVK KMYQDYLNCLPTKAVLNNSEQTKKVLNKMKKTSFYCLYLNGATLFATKGKIRRATKRGSL LSIYPNAKKQSFGRLLVGDTLYSYDGSVLTYAYLNSQYNPSNHSSSGSSSGGSFGGGSFG GGGASGSW >gi|307679305|gb|GL456422.1| GENE 24 20719 - 21288 731 189 aa, chain - ## HITS:1 COG:TM0961 KEGG:ns NR:ns ## COG: TM0961 COG1704 # Protein_GI_number: 15643721 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Thermotoga maritima # 26 188 32 193 193 136 45.0 2e-32 MNKKNKFLSIIVVVVVIIGAFVMKAYNQLITLDNKVEAEWSQVENVMQRRADLIPNLVSS VQGSMTQEKEVLKEITEARKAYAGAKSSSEKGQANEQIEKGLGNFVTVLNEDYPKLASSE NVKTLMTQLEGSENRISVERRNYIQAVETYNQQISKFPDKIIAKLLGFEKKTNYVATEQG KEVPQVEFK >gi|307679305|gb|GL456422.1| GENE 25 21447 - 22148 1062 233 aa, chain - ## HITS:1 COG:FN0215 KEGG:ns NR:ns ## COG: FN0215 COG1285 # Protein_GI_number: 19703560 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Fusobacterium nucleatum # 3 229 13 242 244 139 37.0 3e-33 MLQLTIPEIILRLVLAMVMGGAIGFERQYKNRPAGMRTHILVCMGAAIIALIQSQIAINA LKDALANPALTGVIRSDQARLIAQVVSGIGFLGAGTIIVTKQSVTGLTTAASLWTVAGLG IAVGMGYYTIALTSFIGVLFALTIVKRIIHVPTIKKLEIRYQHKQETKEFINQYFEEKHI EIYDVNFNVSWVDDTKIYTNIYTIDLPKGLTYADVIEDLSVSNNVTKLRLINV >gi|307679305|gb|GL456422.1| GENE 26 22244 - 22945 1042 233 aa, chain - ## HITS:1 COG:L14408 KEGG:ns NR:ns ## COG: L14408 COG0363 # Protein_GI_number: 15673555 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Lactococcus lactis # 1 233 1 233 235 295 63.0 6e-80 MQIIRVANAEEGGKKAFELIKEGMNNGAKVLGLATGSTPETLYKEMTASDVDFTEMTSVN LDEYVGLGGEDEQSYRYFMNKHLFDKKPFKETFVPNGKAEDLDAASAEYEKIIDAHPVDI QILGIGQNGHIGFNEPGTPLDSLTHVVELTESTINANKRYFDKVEDVPTRAVSMGIGSIM KGKKMILMAYGEAKAEAIKGMIDGPVTTDMPASALQNHQDVVIIIDDAAASKL >gi|307679305|gb|GL456422.1| GENE 27 23075 - 24283 1525 402 aa, chain - ## HITS:1 COG:BH3670 KEGG:ns NR:ns ## COG: BH3670 COG1316 # Protein_GI_number: 15616232 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 5 305 2 303 304 234 42.0 2e-61 MKLWKKVVLGFLSVLLVVVAGVCAYGIKMYSDANSTINGIYQSVNRKSNKGATANIDAQE PFSVLLMGIDTGDLGRTEQGRSDTTMVVTINPKENKSTMISLDRDILTDIVGNDTQDKLN HAYAFGGAEMAINTVQELLDIPIHHYVSINMKGLKDLIDAVGGIEVDNTIGEFTLDGITV PAGKIKLDGTTGLAYARMRHEDPEGDVGRQRRQREVVEKIVRKVMSFDGVSKYRKILDAV EANVKTDLTWDDMMDIQSKYLSAFKTIDSEQLQGYSATIDDIYYQVLDPNSLYKTQTTLR KQLGLKEHASEREKDLAFYNQFSYAVTDTALIGESGDSSVNSSTSSSSTADTTAGQTEYN GNTQQAAEGAYDPNTYVDPNTYTDPNAYADPNTYVDPDAPQY >gi|307679305|gb|GL456422.1| GENE 28 24433 - 25413 1076 326 aa, chain - ## HITS:1 COG:lin2126 KEGG:ns NR:ns ## COG: lin2126 COG0253 # Protein_GI_number: 16801192 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate epimerase # Organism: Listeria innocua # 3 325 4 323 329 277 46.0 2e-74 MNVMMQKVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVGEGT HGTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQAPSLAE EVATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRFTAVAVPNPHLVAFVDHET LNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGTAMCASS LLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDDSYWMELIGNATITHLIEGSLTDLLNG AFEKITITETNEQKHYQEFLQTLSQK >gi|307679305|gb|GL456422.1| GENE 29 25561 - 26169 761 202 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent [Streptococcus pneumoniae TIGR4] # 1 202 1 201 201 297 67 1e-79 MTYTLPELPYAYDALEPYIDVETMHLHHDKHHNTYVTNLNAAIEKHPELGEKSVEDLISD MNAIPEDIRTAVRNNGGGHANHTFFWEIMAPNAGGQPTGAIKEAIDETFGSFDEMKAAFK TAATGRFGSGWAWLVVNNGKLEITSTPNQDSPLMDGQTPVLGLDVWEHAYYLKYKNVRPD YIEAFWNVVNWDKVNELFAAAK >gi|307679305|gb|GL456422.1| GENE 30 26363 - 27172 827 269 aa, chain + ## HITS:1 COG:no KEGG:EF0462 NR:ns ## KEGG: EF0462 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 269 1 269 269 499 100.0 1e-140 MNTLQLFKQAFFSVSELRHAKKMAFWKVILYAVFLSAILALPITKQVFSVLQEVQQDGQK IAEKLPDFSIENGTLQTKAKESGFIYQTDSIIFTFDPDGKRTAADVQKDLIGNAFGLAFL QDEFVVALPNSGATESILGTDQFIFPYSKGTLDGVNAQSIKTALSEAAIPWWTKLIVFLV AIYPVLIGLVLDLLIAAIGASLYSKLRFYSLRLIDCLKIITYCATVPVILSAILNFVNPM FNDGILVILLSLFFFFVTTKNEPRNIPGS >gi|307679305|gb|GL456422.1| GENE 31 27206 - 27625 572 139 aa, chain - ## HITS:1 COG:SP0064 KEGG:ns NR:ns ## COG: SP0064 COG2893 # Protein_GI_number: 15900009 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Streptococcus pneumoniae TIGR4 # 1 138 1 134 134 69 36.0 2e-12 MKPKLILMSHGRMAEETLASTQMIVGELADAAIVSMTAEDGLSGTQAKLAAILKEAGNVP TLVLADLKGGTPCNVAMMAMGTYPQLRVVAGLNLAMAIEAAVSPVENVDELAVYLTQIGQ SAVTTIDLPELTDEEEFEE >gi|307679305|gb|GL456422.1| GENE 32 27635 - 28624 977 329 aa, chain - ## HITS:1 COG:lin2030 KEGG:ns NR:ns ## COG: lin2030 COG1680 # Protein_GI_number: 16801096 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Listeria innocua # 11 329 6 326 335 171 34.0 2e-42 MNQIAIQETIQRLINQQVVSGVAWGTITEDSLSEQYTGFLGNTGPFARQKVSSASLYDLA SLTKVIGTTNRMLQLIDTNQLTFSTTVGEILPDYQGLSCSIGELLLHQSGLPADVVDKKN VTKKSLQEIILTHSLSERGKTTYSDLGYYLLGEIIQVLDRCSLEESFQTYLFQPMNLQHT SFTVSDFAQAVPTEITKQRGVIQGVVHDSKAYQLKAPIGSAGLFATLPDLLTFVQCFMNN RYPTGKPLFSEKMFTALWSMNQGGRTFGWEVKKTQAGVDYLYHTGFTGTAIGMKKETKEA LILLTNRIHPTREERGFLKARTKIYQQYF >gi|307679305|gb|GL456422.1| GENE 33 28637 - 29527 1063 296 aa, chain - ## HITS:1 COG:BS_ybbI KEGG:ns NR:ns ## COG: BS_ybbI COG2103 # Protein_GI_number: 16077238 # Func_class: R General function prediction only # Function: Predicted sugar phosphate isomerase # Organism: Bacillus subtilis # 1 295 5 299 304 282 53.0 7e-76 MNLEGLTTEARNETTKKIDQVSTLEMVTLINQEDQKVAQAIEKVLPQIATAIDAAAERFK KGGRLIYCGAGTSGRLGALDAIELTPTYSVSPERAFGILAGGEKAMYQAIEGAEDSKELA IEDLTQHQLTARDVVIAIAASGRTPYAVSAIEYGKKVGALTISVTCNNQSPMNQLAEIGI APIVGPEVITGSTRMKAGSAQKMVLNMFSTGIMVKVGNIYQNLMVNVQPTNEKLIQRATN IIKEAAEIEESQAKEYLEAAQLEVAPAIVMAKAHVDFQKAKQLLAEHDGRISEVLA >gi|307679305|gb|GL456422.1| GENE 34 29542 - 30393 605 283 aa, chain - ## HITS:1 COG:L147291 KEGG:ns NR:ns ## COG: L147291 COG1737 # Protein_GI_number: 15673115 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 1 283 1 283 283 124 28.0 2e-28 MEPIRSIRQKYKDFSKVNKRIADYILKDPTRLLSLTANEIASNSETSPASVTRFSKQLGF DSWEELKLSIAAVQAASNGKKDIDPIVAADDSVDTICMKVESLLNATIEDLFYTVDKQAL ERAIAHVKKAEKIHLVGIGASSLTTYNLYHKFNRAGRQAIFNYDSHMMLEFLNYATAQDI LITVSYSGLTKEALIACEIAKNRGATVIFITSNDGENVQSLSDEVLLVPNNEHLIRVGAI SSIASSMAIGDVLYLGSIQDDLDTEIERNMIETSQLVSRLKEK >gi|307679305|gb|GL456422.1| GENE 35 30410 - 30886 708 158 aa, chain - ## HITS:1 COG:lin0021 KEGG:ns NR:ns ## COG: lin0021 COG3444 # Protein_GI_number: 16799100 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Listeria innocua # 3 148 6 151 162 142 54.0 3e-34 MTIVHARVDERLIHGQVATVWTNTVGAQRIMVVNDAAVKDQLQIGALKMAKPAGVKLSIL SKRKAIEKILAGNYDEEKVFLITKDIADMAALIDGGVPLQSFNVGNISQKEGSRAIKKSV ALTDEDIQTVRRLTDNGVTITAQMIPSEPNEAILTFIK >gi|307679305|gb|GL456422.1| GENE 36 30917 - 31735 1014 272 aa, chain - ## HITS:1 COG:lin0023 KEGG:ns NR:ns ## COG: lin0023 COG3716 # Protein_GI_number: 16799102 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Listeria innocua # 5 262 16 272 275 206 45.0 3e-53 MTNKLTKKDINKVYVRNLFGYQWGWNYEKMQGLGYAWVMMPALKRLYSEDPVAMKKALKT HLGFMNTTPAMSHLIVGADMALEEEVGIEDEMAITGLKTGLMGPFAGVGDTIFIAIYRAI VFSIAAYMAQGGQVVGLLIPLIAGAVVLWVRYKFTWIGYHQGKKIATEFADKMKLFTQGA AILGLTVVGGLIPSVITYKLDLTYKMGDVTLSVQEMLDKILPALIPLGIVLLSYWLLGKK KMNSTRLIFVLILIGMVLGNLQPMLAWVGGLF >gi|307679305|gb|GL456422.1| GENE 37 31728 - 32531 972 267 aa, chain - ## HITS:1 COG:lin0022 KEGG:ns NR:ns ## COG: lin0022 COG3715 # Protein_GI_number: 16799101 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Listeria innocua # 1 267 1 267 267 216 47.0 3e-56 MTVSIGIILILCLYTVVGVLDQISIQIGPYTPLFAATFTGLVLGDVQTGLMIGATLQLMT LGVATYGGATVPDFLSGAIMGTAYAIISGKGAEYGIGVAVPIGLLLTQLDILGRMANTFF QHKADRYAEEGNYKGVERCNVLGIFPWTISRVIPVFIGLAFGEQVVNAINNWIPIWVMNG LKAAGAILPAMGIAILMRYLPIKTYWPYFIIGFVLLAYGAQFFSVLGVALVGLALAAIYV MNHNKGGAATTSGTVIYEDDEEVEIDD >gi|307679305|gb|GL456422.1| GENE 38 32692 - 33471 646 259 aa, chain + ## HITS:1 COG:lin0630 KEGG:ns NR:ns ## COG: lin0630 COG0730 # Protein_GI_number: 16799705 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Listeria innocua # 4 252 3 243 246 67 26.0 3e-11 MRVLLIYFITIFLSNTVGALSGMGGGVIIKPVLDFLGFHSLNSIAFYSSVAVFVMSISST YKQYQNGVQIEWKKAASISFGSLVGGMLGDLLLNQAIALAPNEEKVQLIQYIIMLLTLVL VLLYNQFSNWHLHLNGLSIFLIVGLGLGILSTFLGIGGGPINVACLILFFGMDIKSATVY SIITIFFSQLAKLGNIGLTTGVAVFDLTMLWAIIPAALFGGYVGGLFSKKLSQQRVAQIY SLVVFLVILLNMYNLWTVI >gi|307679305|gb|GL456422.1| GENE 39 33540 - 33941 597 133 aa, chain - ## HITS:1 COG:lin2302 KEGG:ns NR:ns ## COG: lin2302 COG1764 # Protein_GI_number: 16801366 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Listeria innocua # 1 132 1 137 138 152 59.0 1e-37 MKKIYETTIINTGGRAGEVHSPDKSFSYAVASPGVKKENTTNPEQLFAAAYSACFNGALE LVMDQEKVEGKSTVTARVSLFQGEDGFSVGAELEVHIDGVDQAKAEELVKKAHEICPYSK ATRNNIDVKLTVI >gi|307679305|gb|GL456422.1| GENE 40 34162 - 35688 1474 508 aa, chain + ## HITS:1 COG:lin0373 KEGG:ns NR:ns ## COG: lin0373 COG0365 # Protein_GI_number: 16799450 # Func_class: I Lipid transport and metabolism # Function: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases # Organism: Listeria innocua # 7 507 6 508 508 644 59.0 0 MTHLLDYQPLNLYTNYQEAAEKTPTVPIIFDESLPAFPALGLETTYGESHQEILKRAYQL AALGVKKGDKIIIYKSPKFDTYLLAVAASYLAAVPVMVSYHLPFETIEVFVDRLEDPYIL FDDVTAEKVQAVRNSSANKKLSVASLLEADATEVPQDELTKDEIAYMTHTSGTTGIPKLI CHSNHSMGWRTKWQKTIFTKIAEKKLVGFHISPVHSRFNIGVSSLMAMGFPMMPLANASS EKVAEMFSTYQPIAVETHPNNFVQWVRLTKEKPEAFASVHYYHSTFDAINNATMVAFLKA SAANEPIFLQVYGQSECGPMILRAHTLESLKDSDARDMGVGLEDLTQARITDEKGQVLSA MTDGHIQFLSKGRALTYYKEDARFAENVYGEWWDSGDYGMLDERGHLFLKDRQVDLIENI DSNLAIEDHLLDALDFLEEVIIVRGKENEPQPILAVVPGEEMDWDAWWTQVADLPHLNEP IIMAFDEIPHTATMKVQRLQLEKWLKEQ >gi|307679305|gb|GL456422.1| GENE 41 35940 - 36638 813 232 aa, chain + ## HITS:1 COG:yieK KEGG:ns NR:ns ## COG: yieK COG0363 # Protein_GI_number: 16131586 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Escherichia coli K12 # 24 225 1 209 213 214 50.0 1e-55 MKILIKQDFDTMSEWAKMLLLSTMSQDKRVNLSITAGKTPALVYQKLASIVKNSSDFDNV HYYNFDEIPVPHQKEGITLTDLRTLYLTPAEISEQNIHPLTVENFQQQEQRIADAGGLDL MLIGLGADGHFCGNMPTTTHFKNETYQVTVTGSEPWFVPEMMQPGMTFVTMGPASIMKVK HLVLIVNGEQKAQMVKQVLQGPVTETYPASILQLHPNLTVLLDEAAASQLEK >gi|307679305|gb|GL456422.1| GENE 42 36695 - 37798 980 367 aa, chain - ## HITS:1 COG:lin2664 KEGG:ns NR:ns ## COG: lin2664 COG4948 # Protein_GI_number: 16801725 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Listeria innocua # 1 362 1 362 374 372 50.0 1e-103 MNIQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGNQGFGELVAFEQPDYVQET LVTERFIIQQHLIPLLLTEALEQPQEVSTIFEEVKGHWMGKASLETAIWDLYAKRQQKSL TEFFGPTRRKIPVGISLGIQEDLPQLLKQVQLAVEKGYQRVKLKIRPGYDVEPVALIRQH FPNLSLMVDANSAYTLADLPQLQRLDHYQLAMIEQPFAADDFLDHAQLQRELKTRICLDE NIRSLKDCQVALALGSCRSINLKIPRVGGIHEALKIAAFCQENDLLVWLGGMFESGVGRA LNLQFASQPTFSFPGDISATERYFYEDIITEPFILEQGTMTVPQGLGIGVTLSQTNLLKY SQYQKIM >gi|307679305|gb|GL456422.1| GENE 43 37799 - 38623 685 274 aa, chain - ## HITS:1 COG:BS_ytxM KEGG:ns NR:ns ## COG: BS_ytxM COG0596 # Protein_GI_number: 16080133 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Bacillus subtilis # 25 270 27 271 274 191 40.0 9e-49 MERLIRGMQYHYQWLTPFDAKRTTVVCLHGFTGTLATFAAVFPSQTPYNVLGIDLPGHGA TASLVAPERYTMKQVCHDLAELTESLNLPCFCLLGYSMGARTALGFALHYPQKVQHLLLE SGSPGLTTAAERQARICQDHRLAERILEEPLVDFIDFWQELPLFQTQKALSVAQQMAIRQ ERLSQSAFGLASSLWYMGTGAQESYWERLVELQPIPTDLLVGGEDQKFIGIAKKMQARQP LLRLTIFPEAGHCIHLEQPTIFYEKVTALLEGAV >gi|307679305|gb|GL456422.1| GENE 44 38611 - 40344 1633 577 aa, chain - ## HITS:1 COG:lin1783 KEGG:ns NR:ns ## COG: lin1783 COG1165 # Protein_GI_number: 16800851 # Func_class: H Coenzyme transport and metabolism # Function: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase # Organism: Listeria innocua # 2 565 3 573 580 506 45.0 1e-143 MNHQETMTDYLTAFIEGLKNSGVEQAVISPGSRSTPLALLLHRETAIQTFVDVDERSAAF FALGLSKASQKPVVLLCTSGTAAANYYPAICEANISHVPLVVLTTDRPHELRQVGAPQAM DQLQMYQNHVKLFVEMALPEATEEMLNYAYWQGAKGAAFAQQTPAAPVHLNFPLREPLLP DLERKTKSSQQTALFAGQSILSTEQVQQLADQWYQKNGVLVVGGSHTEEEAALFIQLAEA LQWPLLADPLANIVTHGQNSEVVIAHSDLFLNVATLPQEPEVVVRFGSLPISKNIMLWLK RLATTETAFYFVDENGQWQEQLKKSQTVIQAKETTFVEQLLTVVKPTEATWLAQWLLLEK TVSEVLLETLNATELNETTASLAVHQTMKENGQLFVSNSMAIRYLDRFMDSRPYRMFGNR GINGIDGIISTALGMSAVAPTQQNVLLIGDLALYHDMNGLFLAKRYQLPLTIVLLNNNGG GIFSFLSQRTLREDDFEPLFGTPLDLDFSLVAELYGASYQEVKTIAELKQILQTAAEEPQ FQVIEVKGNRQENVHLYESILAEIGRRVERQGISWNG >gi|307679305|gb|GL456422.1| GENE 45 40344 - 41711 1487 455 aa, chain - ## HITS:1 COG:lin1784 KEGG:ns NR:ns ## COG: lin1784 COG1169 # Protein_GI_number: 16800852 # Func_class: H Coenzyme transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Isochorismate synthase # Organism: Listeria innocua # 2 453 4 459 462 310 37.0 3e-84 MKLPDELRQAYQKNARQFSWVFPLETEQTALAIFAAGEKAYQGERFFWQTPKKDFALVGF GYETILKGAETETHQLNNFLKKESATRFQNMSISGTGALLFGGLPFDTEQTPTEAWGELG EGWFYLPSILFTFSGSRIYGTLNFSGSSEQEVEERWSTLVAQFDRLLATCEELPAVAETK IDKEEVAVTEWLQAVNETVAVLREDGPLKKVVLARQLAVSSPEKIRSNQVLVNLMAQQQN TYLFALEAKDTSFIGATPERLLLGTKETFATACIAGTIKTGQTPEETKALGAQLLQDRKN TGEHQIVVERLAKELAKMTTSENSIQAPIILENRDVQHLYVPISGQRKPGISFLESVMQL HPTPALGGEPKELAVEWIRQYEPGSRGLYGAPIGWISGNDDSGEFAVALRSGVFAGQQGV LYAGCGIVADSQAELEREETKIKFQPMLRGIGGQV >gi|307679305|gb|GL456422.1| GENE 46 41708 - 43165 1296 485 aa, chain - ## HITS:1 COG:lin1780 KEGG:ns NR:ns ## COG: lin1780 COG0318 # Protein_GI_number: 16800848 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Listeria innocua # 3 474 6 463 469 378 42.0 1e-104 MTWLNKQVQKRPDHPAFYFQDESWTFLEVQQEVSHWVATYQQVLAPEEKRVALFSKNSKE LYFSILALWELGKELLFLNTHLTLAELTFQLKDAQVKTIIGAPETQALLEEISFVDVQPM VKKQHSLSHQEFQQPSDLESVASIMYTSGTTGQPKGVLQRFKNHLASARGTQENMGITAE DCWLCAVPLFHISGLSIVVRQLVLGCSIRLYDKFDEQQVTQDLQEGRGTVISVVATMLQQ LLSVYPEAGYRASFKGMLLGGGPIAPDKLAQCEEKGIPVIQSYGMTETCSQVVALKFEDA ALKIGSAGQPLKDMQIKIVDELGQEQPEKQVGEILLKGPNVVSGYLNQRQPEKWTADDWF KTGDMGYLDAQGYLYLVSRLSELIISGGENIYPTEVEQVLQAITGIKAAAVVGEPDAQWG AVPVAYVISDQELTLAQIQDQCSRKLAKYKRPKRIYFCHSFPQTASGKIAKHRFMTEERE AFLIR >gi|307679305|gb|GL456422.1| GENE 47 43170 - 43985 1039 271 aa, chain - ## HITS:1 COG:lin1781 KEGG:ns NR:ns ## COG: lin1781 COG0447 # Protein_GI_number: 16800849 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroxynaphthoic acid synthase # Organism: Listeria innocua # 3 271 4 272 272 461 81.0 1e-130 MRNWTTIKEYDEILFEQAGKVAKITINRPHVHNAFTPKTVMEMIDAFNISRDKEDVGVII LTGAGDQAFCSGGDQKVRGNGGYVGEDNIPRLNVLDLQRLIRVIPKPVIAMVKGWSIGGG NVLQLVCDLTIAAENAKFGQTGPNVGSFDGGYGSGYLARVIGHKKAKEVWFMCKQYSAQE ALDMGWINTVVPLEQVEDVTMEWAEEMLTKSPIALRMIKASLNADTDGLAGVQQLAGDAT LLYYTMAEAQEGRDAFKEKRTPDFDQFPKFP >gi|307679305|gb|GL456422.1| GENE 48 44240 - 44530 192 96 aa, chain + ## HITS:1 COG:lin2484 KEGG:ns NR:ns ## COG: lin2484 COG2050 # Protein_GI_number: 16801546 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein, possibly involved in aromatic compounds catabolism # Organism: Listeria innocua # 4 96 31 123 123 74 35.0 4e-14 MHKQPYGLVHGGLNGILIETACSLGANENVPENTFAVGIDLQVNHLRSVHDGSLTVIATP DHSGKTLQVWEAKIYNADHQLTSVGRCTLTNRQKKQ >gi|307679305|gb|GL456422.1| GENE 49 44600 - 45199 809 199 aa, chain - ## HITS:1 COG:no KEGG:EF0443 NR:ns ## KEGG: EF0443 # Name: not_defined # Def: LysM domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 199 1 199 199 312 99.0 5e-84 MKSIKTILLGTTLAAGLGLFLGTDANAESLYTVKAGDTLSTISHQFAGDNSLIQKIASDN KLPNLDLIFEGEQLVIRSEKEIANTPAPAVEVAPVQQVVEQPVAQPVQQEVQQPVAQEVA QPAAPAASSDAKEWIAQRESSGSYDATNGQYIGRYQLSASYLNGDYSPANQERVADQYVA GRYGSWDAAKSFWLANGWY >gi|307679305|gb|GL456422.1| GENE 50 45705 - 45815 66 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKQKELNKKILYFACYLFILILFKKGTAKATMKTKY >gi|307679305|gb|GL456422.1| GENE 51 45950 - 46024 67 24 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNLHLSHFIIKYSEYYKNWSFIYE >gi|307679305|gb|GL456422.1| GENE 52 46017 - 47498 1524 493 aa, chain + ## HITS:1 COG:L104437 KEGG:ns NR:ns ## COG: L104437 COG3104 # Protein_GI_number: 15672684 # Func_class: E Amino acid transport and metabolism # Function: Dipeptide/tripeptide permease # Organism: Lactococcus lactis # 5 493 2 497 497 511 55.0 1e-144 MSDKEQLEKLDKSFLGQPKGLATLFFTEMWERFSYYGMRAILMYYIYDTVANGGLGLPKA TALAIMSIYGSMVFMSSIIGGWVSDRVLGSRKTVFIGGLLIIAGHIVLATPFGVPALFVS IMLIVFGTGMLKPNVSGMVGHLYSKTDLRRDAGFSIFYMGINIGALIAPLVVGTLGQEYN YHLGFSVAAVGMFFGLLQYYFQGRKSLAGIGQAPTNPMSKEEQKKFAKAFMLAIVVALLI FGGAYVTGHLTIDFFINTISVLGILLPVYYFSKMLTSKDVTAEEKPKVLAYLPLFLAAIV FWSLEEQGSSILALFANERTQTSLFGFPIAASWFQSLNPVFVVILTPIFVTLWTKLGKRQ PSTVVKFSLGLVFAGLSFVLLMLPGLLYGTEGRVSPLWLFFSFFIMIVGEMCLSPVGLSI TTKLAPKAFEAQTVAIWLLADAASQAINAQIARFYTPGTESAYFGIVGLVAVVAGILLFI VKKPIQNLMGDVR >gi|307679305|gb|GL456422.1| GENE 53 47605 - 47805 334 66 aa, chain + ## HITS:1 COG:no KEGG:EF0439 NR:ns ## KEGG: EF0439 # Name: not_defined # Def: immunity protein PlnM, putative # Organism: E.faecalis # Pathway: not_defined # 1 66 1 66 66 90 100.0 1e-17 MRYLIGGIFLLISIWQFIVTGRTFSYLKKEGGKRTSPFILLGLWSSLVFAIISFAVAIAS FFYVSF >gi|307679305|gb|GL456422.1| GENE 54 47889 - 48725 859 278 aa, chain - ## HITS:1 COG:mll1734 KEGG:ns NR:ns ## COG: mll1734 COG1082 # Protein_GI_number: 13471685 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate isomerases/epimerases # Organism: Mesorhizobium loti # 19 219 17 218 304 90 28.0 3e-18 MLTLAVRAHDVGTKISPVELAKKIAETNITSIQFALGISYPEYASAAVLSPGLGSQLKNI FEDEKITISVLSCYINLIHPDLEEREKRLHQFETYIRYASMFGAKIVATETGSIYETIYY TEDNYTEEAYEEVLFSVRRLCREAEKYGIIVGIEPGINHPIHTIEKMQRLIDEVASTNLG IILDPTNLIRVDIDKTYLEIVEEAFECFGEKIVAFHLKDFIIRNQQIFPVAIGEGQVPLK ETIQFLNKHKPGLFTIFEETPFEKIASAYQKVSQYHSI >gi|307679305|gb|GL456422.1| GENE 55 48727 - 49647 813 306 aa, chain - ## HITS:1 COG:CAC2818 KEGG:ns NR:ns ## COG: CAC2818 COG2207 # Protein_GI_number: 15896073 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Clostridium acetobutylicum # 16 281 8 275 279 151 29.0 2e-36 MKSVKEIRKSQVNSMISDQYEIFHVKDMVSPEKTIYHYHDFYEVHCTLKGVATFFLDGHQ FDVEAGTVLLIHYHDLHRIIKQSTDNFERMYIFLTPDFLQQRSSKRTNLSACFQHFGQRR SKVIKVDVAKLANYLTPLDHSPLPEEYGADVRYEQQLLDFLIYLNQLVLKEENESQPKQM IENERIEAMITYISQNLDQPLTLEQMEKNFFVTKYYVTREFKKHTGFTFHQFVLKKKLLY AKQLLKEYRSASDVYLKCGFKSYPHFLKSFKKEFNMTPKEFLVKHKNNQIIHFDHYEESI KKVRLE >gi|307679305|gb|GL456422.1| GENE 56 49857 - 50147 329 96 aa, chain - ## HITS:1 COG:yiiL KEGG:ns NR:ns ## COG: yiiL COG3254 # Protein_GI_number: 16131741 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 96 8 103 104 104 52.0 3e-23 MQVYPDQHAEYQRRHEKLWPEMRQMLKEHGVIKYQIFLNPETSTLFGYLEIEDEARWEQI ALTPINQKWWNYMEDIMETNPDCSPVTTELRKVFEL >gi|307679305|gb|GL456422.1| GENE 57 50165 - 51013 1100 282 aa, chain - ## HITS:1 COG:lin2979 KEGG:ns NR:ns ## COG: lin2979 COG0235 # Protein_GI_number: 16802037 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Listeria innocua # 5 272 4 271 273 421 70.0 1e-118 MKKMNVLQAPFVEEMVKTTKNLYRLGWDERNGGNISYLLKEEEILPFLNPTQVLRKIPMK FDATKLAGKYFIVTGSGKYFKNVCDAPSENLGILRVSENGQELELLWGLEDEAVPTSELP SHFMSHIARLAVDPENRIVMHNHASHLLAMSFTHELDEKVFTRTLWQMCTECLVVFPDGV GIIPWLVPGTNEIGVATAEKMKESRLVLWPQHGIYGAGRDMDEVFGLIETAEKAAEVYTY VCAQGGVRQTISDADLWRLAEAFGVTPKVGYLEEKVSKRRKL >gi|307679305|gb|GL456422.1| GENE 58 51041 - 52327 1376 428 aa, chain - ## HITS:1 COG:lin2980 KEGG:ns NR:ns ## COG: lin2980 COG4806 # Protein_GI_number: 16802038 # Func_class: G Carbohydrate transport and metabolism # Function: L-rhamnose isomerase # Organism: Listeria innocua # 2 416 5 420 420 676 73.0 0 MTTITQKYEEAKEKYASIDVDTEAVLEKMADVKISMHVWQGDDVRGFLSEDELSGGISVT GNYPGVARSPQQLRQDLEKAISLIPGKHKLNLHAIYLDTEERVDLNELEPKHFEPWVTWA KENGLGLDFNPTFFSHPMYRDGFTLAHPNPQVRDFWIEHGKRSRRIAEYFGRELGQVAVN NFWVPDGFKDNPVDRLTPRKRLMASLDEIFSEEIDPAYTVDAVESKLFGIGSEAYTVGSH EFYMGYGLTRNKLICLDAGHFHPTEVISNKLSSLSLFGEGMLLHVSRPVRWDSDHVVIMD DELQEIAKELVRNDLLGKTHVGLDFFDATINRVAAWVIGTRNTQKALMKAMLEPTKVLKE AELMGDFTTRLALTEELKDFPFADIWNYYCQENHVPIGLDWLTDVQEYEKVILPTRQLPT GKDSCRFS >gi|307679305|gb|GL456422.1| GENE 59 52324 - 53826 1463 500 aa, chain - ## HITS:1 COG:BS_yulC KEGG:ns NR:ns ## COG: BS_yulC COG1070 # Protein_GI_number: 16080172 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Bacillus subtilis # 17 492 3 476 485 519 53.0 1e-147 MTTINKVKKEQVEKRTYLAVDIGASSGRIMKSQRLANGQITIEEIHRFKNGFHQKDGYQR WDMASLVHELLLGLQKVKQLGIKECFIGIDTWGVDYCLLDQSGQLLDEPIAYRDGRTEAA VTNFSKGYSLEKLYQQTGIQVQPFNTIFQLFVEEKERLAAASQLLLIPDYLGYVFTGKAV IEATNASTTQLLNAGTKQWESELLDFLGIDETLFPTLVEPGTILGDLQTAAFPDYDLPNA TLITITSHDTASAILGTPGIGDDWAYISSGTWSLLGIETTVTTISAEAFQENYTNEWGAQ NTIRFLKNIMGMWLIQEVARHQNYQYSYAELAALAEKEPAFQQFIDVNDPRFLNPGNMIT ELQAYCRETQQTVPESPGELARCIYDNLALCYSVELEKLAQLTGIERKITTLHVVGGGSN NRLLNQLTADVANVTVKAGPGEATALGNLLMQMIATGELKDIPAARTCIQTSFPTEIYQA NPIDSTIKNRYQAFMKRSSL >gi|307679305|gb|GL456422.1| GENE 60 53955 - 54395 422 146 aa, chain + ## HITS:1 COG:no KEGG:EF0432 NR:ns ## KEGG: EF0432 # Name: not_defined # Def: AraC family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 139 1 139 290 276 100.0 3e-73 MDYWEKADYSWSDDSKRHILTPSSKSRTLFYYIQEIGQFKASRPYYTERAHLPSYLIKFT LNGTGELRYRYHTYSLQRGDLFFIDCRDYQYYQATSEDPWEMDWIHFEGGNSGAFFQEFM KNGSPVFSTNQLPEDNPIHLIIQQLL >gi|307679305|gb|GL456422.1| GENE 61 54471 - 54827 290 118 aa, chain + ## HITS:1 COG:BH1958 KEGG:ns NR:ns ## COG: BH1958 COG2207 # Protein_GI_number: 15614521 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Bacillus halodurans # 16 115 405 505 516 83 44.0 8e-17 MQKYRQDFTYETIPSLVLEMKAYIDQHFKETISLEDLAQLFHLNKYQLNKEFSKYIGLPP IKYQISKKISYSKDLLRYSNQTVKEIAVDVGLENYAYFSRLFKKRTGLTPSQYRKSGF >gi|307679305|gb|GL456422.1| GENE 62 54975 - 56270 1089 431 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020581|ref|YP_526408.1| ribosomal protein L16 [Saccharophagus degradans 2-40] # 7 427 6 426 435 424 48 1e-117 MALEAGIILFVVFAVLLVVGMPIGMSIAASSIATLLLVIPFEAAAFTSAQKMVSSLNSFS LVAIPFFIFSGVIMNNGGIAQKLVNFSMLFVGRVPGALAHTNVLGNALFGSISSSAIAAS TAIGGVLIPQQVNEGYDRKFATAVNIASAPTGMVIPPSTAFIMYSLVAGGASISSLFLGG YLVGSLWALGIMVVAYVIAKRHNYPTVAKAKKGEVSKVLREAVPSVLLIVIIIGGILTGL FTAIEASAIAVAYSLLISMFYYKTVKINDLPKMLKEAVLMSGTIMFLLATSSMMSFAMAF TGIPEAISTAILGITDNKYLILLLVNVVLLFVGMFMDVGPAILIFTPIFLPIVMNVGVDP VHFGLFAIMNLCVGSITPPVGTGLYVGASVGGVKAEQMLKPLVPFYLVILAILLLITYVP ELVMWLPNLIS >gi|307679305|gb|GL456422.1| GENE 63 56306 - 56587 145 93 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239995925|ref|ZP_04716449.1| ribosomal protein S3 [Alteromonas macleodii ATCC 27126] # 1 87 65 153 161 60 33 4e-17 KKGHLAVTLLSEKLQGKQKRFLEFIVQLLFLLFAGVIMIFGGWNGVVITLGQISPSLAIP MGYVYLAVPVAGVLMFIYSLMNLLELFTQSKDS >gi|307679305|gb|GL456422.1| GENE 64 56572 - 56781 117 69 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020580|ref|YP_526407.1| ribosomal protein S3 [Saccharophagus degradans 2-40] # 1 62 1 62 164 49 35 1e-16 MKGFRKFLNRLLEILGSIILAAMVLVVLYQVFARTVLKNPSTLTEEFVRFALVWLAMLAS AYVVGKRDI >gi|307679305|gb|GL456422.1| GENE 65 56796 - 57806 591 336 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020579|ref|YP_526406.1| ribosomal protein L22 [Saccharophagus degradans 2-40] # 1 334 4 331 331 232 37 7e-60 FMKKRKVLFTAVMILAGLQLLSGCGKTEASASDTVVLRYAYASNSQPVIDSMKKFGELVE EKTDGKVQIEYFPDGQLGGETELIELIQTGAIDFAKVSGSALESFSKDYSVFAIPYIFDN EKHFFKVMDNQALMQPVYDSTKKLGFVGLTYYDSGQRSFYMSKGPVTSPDDLKGKKIRVM QSETAIKMVELLGGSPVPMGSSEVYTSLQSNLINGAENNEFVLYTAGHGGVAKYYSYDEH TRVPDIVIMNEGTKERLTAKQEQAIEEAAKESTAFEKTVFKEAVEEEKKKAQAEYGVVFN QVDSEPFQKLVQPLHESFKNSSEHGELYQAIRQLAD >gi|307679305|gb|GL456422.1| GENE 66 57824 - 58930 1211 368 aa, chain - ## HITS:1 COG:STM1911 KEGG:ns NR:ns ## COG: STM1911 COG4225 # Protein_GI_number: 16765253 # Func_class: R General function prediction only # Function: Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins # Organism: Salmonella typhimurium LT2 # 1 367 11 378 379 454 56.0 1e-127 MIIKQEQFIPKDTVETTIDLLIRNLTTIKDNTGEFLLDFDGLKVDDKSWTIWNWPQGVGL YGIYKNYRNTKSEKALQVVNDWFEGRMQEGAPPKNVNTMAPLLTMAYLYEDTKDSKYIPY LEQWAEWVMEEMPRTNEGGLQHATYGPENKNQLWDDTLMMTVLPLAKIGKLLNRLDYLEE AKHQFLIHIKYLQDKKSGLWYHGWTFEGNHNYAEALWARGNCWITIAIPEIIEILELPKG DSLREFLLSTLNAQVAALAKYQDESGLWHTLINDSNSYLESSATAGFAYGILKAVHKKYI SSEYEEVANKAIAGLLNEIDETGEVQHVSVGTGMGDNLDFYRTIGMTAMPYGQSLTILCL TELLVSYC >gi|307679305|gb|GL456422.1| GENE 67 59160 - 59948 204 262 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 13 252 4 238 242 83 26 5e-15 MEFKMNDFQLDGKVALITGAVYGIGFEIAKSLAEAGATIVFNNLSPESVEQGLENYRAVG IEARGYVCDVTDEEQVQAMVAQIKEEVGSIDILVNNAGIIKRIPMVEMSAEEFRQVIDVD LNAPFIMAKAVIPDMIEKGHGKIINICSMMSELGRETVSAYAAAKGGLKMLTKNIASEYG QYNIQCNGIGPGYIETPQTAPLREPGHPFNEFILGRTPANRWGTPADLAGPAVFLASNAS DFVNGHILYVDGGILAYIGKQP >gi|307679305|gb|GL456422.1| GENE 68 59970 - 60809 1007 279 aa, chain - ## HITS:1 COG:BH2166 KEGG:ns NR:ns ## COG: BH2166 COG3717 # Protein_GI_number: 15614729 # Func_class: G Carbohydrate transport and metabolism # Function: 5-keto 4-deoxyuronate isomerase # Organism: Bacillus halodurans # 4 279 1 276 276 320 53.0 2e-87 MQNMETRYTHSPADIRHYSTEQLRDEFLVEKVFIPGAISLTYTHNDRMIFGGVTPTTEEL EIILDKELGVDYFLERRELGVINIGGPGFIEIDGAKETMKKQDGYYIGKETKHVRFSSEN PDNPAKFYISCVPAHHKYPNVKISIDEITPMETGDPLTLNQRKIYQYIHPNVCESCQLQM GYTILEPGSAWNTMPCHTHERRMEAYVYFDMEEDTRIFHMMGKPDETKHLVMSNEQAAIS PSWSIHSGVGTSNYSFIWAMCGENITYTDMDMVAMDQLK >gi|307679305|gb|GL456422.1| GENE 69 60822 - 61829 1043 335 aa, chain - ## HITS:1 COG:TM0067 KEGG:ns NR:ns ## COG: TM0067 COG0524 # Protein_GI_number: 15642842 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Thermotoga maritima # 3 335 2 339 339 225 40.0 8e-59 MGKVVTLGEIMLRLSTPVGIRVAQTENFAVHYGGGEANVAISLANYGHQVTFASKVPDNS LGEAAKKHLSRYGVSTEFVRTGGTRLGTYYLETGTGERAASVVYDRAYSSFAQIEEMEWD LHELFSGVEIFHISGITAALSKNWQSMTVALVKAAKQAGCQVSFDINYRGKLWSQKEASV ALKAILPFVDICSAGVLDARYLLEIPEPEEELEDALTWYYRKMQERYPNIQVFYSTKRQV HSATDNELIGTLWYKGACYTSKCHRLQPIVDRVGAGDAFAGGVLHGILAAYDPQTCIDFA TAASALKHTVHGDCNQFSQKEVLAFLATGSGKINR >gi|307679305|gb|GL456422.1| GENE 70 61834 - 62481 882 215 aa, chain - ## HITS:1 COG:SP0317 KEGG:ns NR:ns ## COG: SP0317 COG0800 # Protein_GI_number: 15900249 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-6-phosphogluconate aldolase # Organism: Streptococcus pneumoniae TIGR4 # 1 206 1 206 209 221 53.0 6e-58 MKRVSILQKLENAGVIAVVRGKTKEEALKASQAIVAGGMRGIELTFTVPQATEVIQELVA LYQKNPDVVIGAGTVLDATTARLAIVAGAEYIVSPSFDEETAKICNLYQVPYLPGCMTIT EMKEALKSGADIIKLFPGSVYGPSVISAFKAPLPQLNIMPTGGVSLENMAEWFDAGVTAV GVGGNLLAPAATGDFEKVREVAQAYMEKFQAIKGV >gi|307679305|gb|GL456422.1| GENE 71 62642 - 63394 929 250 aa, chain - ## HITS:1 COG:TM0065 KEGG:ns NR:ns ## COG: TM0065 COG1414 # Protein_GI_number: 15642840 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Thermotoga maritima # 11 250 4 244 246 123 34.0 3e-28 MKETKPYGTVLLKAAKIMDCLSLQPDQTLQEIAKNTEMTASTAIKILETLTLIGYVQKDT NKTYRLGTKLIRYANQSVEQIDLAEIAVPYLENLQNTVDETIHLGILNNNEILYINKLEP KNQTIRMSSKVGITRPLYNSAMGKAVLAEFSEEQVQQYLDTQTLIPYTENTITNPLRLKK ELKQVQQTGVAYDDEEIEQDIFCSGVSLMKDGEIAGAFSVSMPKYRLTEENKTTINQALL ATKAAIEAKL >gi|307679305|gb|GL456422.1| GENE 72 63525 - 63992 542 155 aa, chain - ## HITS:1 COG:no KEGG:EF0421 NR:ns ## KEGG: EF0421 # Name: not_defined # Def: MerR family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 5 155 1 151 151 288 100.0 4e-77 MWSKMIQRLLNEENLLIGISELSEIAEVSPRQLRYWEEKGYISSIAKDANGPRKYRLHTV VKVHWIKRFLDEGYTLQSAVEKAEEQHRNVGMTKKIFSQMFHGISEVCPNYVAIDLGDFD EEQKLYVVFNETTEVSEYLLIPKDADVSDELKKRK >gi|307679305|gb|GL456422.1| GENE 73 64135 - 65610 1703 491 aa, chain + ## HITS:1 COG:lin2733 KEGG:ns NR:ns ## COG: lin2733 COG0477 # Protein_GI_number: 16801794 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 4 484 7 487 493 518 61.0 1e-146 MTSQQPVDIHGKPYNRSLLVGVLLIGTFCTILNQTLLTTALPTLMKEFDISASSVQWLTT GFLLVNGIMIPISAWLINKFSSKKLYITAMSTFLIGTIICFVAQDFGMLLTGRLVQAAGV GVSMPLLQTIMLSIFPPEKRGAAMGTTGIVIGLAPALGPTLSGWIIDSYTWRDLFGMVIP IVVLVLILASFLMKNVIQLSNPSIDVLSVILSTLGFGSLLYGFSSVGDKGWGSPQVYGFL IVGAIVLCLFTYRQLHLEQPFLELRVFKSKVFTVAAILSGVTNMAMIGAEMVLPLYIQNI RGESAFHSGLMLLPGALVMGLMMPVTGRIFDKIGARRLAITGMFILTAATLPFAFLTKAT PIIYIIVLYAIRMFGISMVMMPVTTSGMNALPMNLLSHGTAVNNTFRQVASSIGTAVLIS VLTNVTKDGLPASDLLKTAPLTYRDQATNATLNGYHAAFFVATIFGVLGLAITFFLNKKE AMPVKEVGAMK >gi|307679305|gb|GL456422.1| GENE 74 65610 - 66314 649 234 aa, chain + ## HITS:1 COG:no KEGG:EF0419 NR:ns ## KEGG: EF0419 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 234 1 234 234 427 99.0 1e-118 MIIFLLILCVLGFAYTNVFGRKVWHKCCMVIFGLGFLASLSLIVLNDKDHFGMTEVTQDK TFELKSSSSSKDGPNMLLYQPLGDGSEKVYLYNTPDKKKLQKTGTENVTNTVQKDAQKST LVQKTTKWSYQESWAKTLFGLADNDNQFAKQENTFNVASDWLVLSADQAKKLGEYMEQHA ADIKKEGTETVGKKMMAAMMANPSMSQEEQAKLTEQYTKEFQQELIQKILSDMK >gi|307679305|gb|GL456422.1| GENE 75 66369 - 67598 276 409 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 [Flavobacteriales bacterium ALC-1] # 12 407 15 410 413 110 26 2e-23 MIANLFVSTFLSLKAHKLRVFLTMVGIIIGITSVVTISALGEGMKRQVVKASSAVNADVL KIHYTMSDGSSDNFMSYEEPDYTFSRVDLKKLQDIQGIESIYPQYGESMMGGGDNLFVPM DYFGAQANLSITSTKGQNDILYGRDFQPSDANTDAIVLNHDIFEAQIRLDDPSQLIGKAV SIGGYMYKVIGILAPKDLDSLGMNDDWATAMSSFVSRESYNKLAKTKAISGINIKVREGA DREAILGQAITILSENHPEVKGTFKENDQDQQLQQQMEEMVTGMTMFLMAITAISLLVGG IGVMNIMYVSVTERKREIGIRRAIGAKPRVILFQFLMEAAFITLIGGLIGVGCGYLLATV VGGYISITPIITPSIFAISTLVSVFTGIFFGIIPAIGASRMDPIKAIYN >gi|307679305|gb|GL456422.1| GENE 76 67595 - 68302 263 235 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 13 232 7 217 311 105 32 7e-22 MEANNTNQPLIELRDINKFYPVGKEKLHVLKELNLTIHQGEFILIMGKSGSGKTTLMNII GFLDRLTDGSYHFSGTDVSKLSENKKSAFRNEYLGFIFQQFFLINSLNVSQNVQLPCVYE GKKSRAEKKAIAEKYLKIVGLETKAKSKVTELSGGQQQRVAIARSLVNDPLLIMADEPTG ALDSETGTEIMELLKELNEQGKTIVMVTHDEDMKKYASRVIHMKDGRFLEEEVIR >gi|307679305|gb|GL456422.1| GENE 77 68315 - 69469 1395 384 aa, chain - ## HITS:1 COG:BS_yknX KEGG:ns NR:ns ## COG: BS_yknX COG0845 # Protein_GI_number: 16078499 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Bacillus subtilis # 73 364 76 377 377 76 28.0 8e-14 MGAVAVIAVGGIVTVNALNKNAQQVAVKQAPKDDWGIDYFDVPDLQQIYINGVIQPEQME AFARDQKITKDPEIKVKNGDVVDAGTELFTYEDEAVTKEIEAQQNSLAKLETKRANIYNK WNRAIDKFNKTKEEDRTMSGDDLNEQYQTEVDAVDEEITFTNETLADLGAKQYISTKANF KGRVSIPEVKDANSPILRLTSEDLYLAGKVNEKDLTKISVGQKAKLTSVSNNVVVDGSIS YIDDNPPEGNSDAASGNPEGGTTMSSYSVKIALANLDKVKNGYHMQATIDLGDLGAIELP KKAIQKEGEQAYVLVNDFGTIIRRDVQVGQENGDKMAIESGLESADRVVISSKKPVKVGD IVESDAAIASDESATNESMTDASK >gi|307679305|gb|GL456422.1| GENE 78 69814 - 70452 483 212 aa, chain + ## HITS:1 COG:YLR290c KEGG:ns NR:ns ## COG: YLR290c COG0702 # Protein_GI_number: 6323321 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Saccharomyces cerevisiae # 2 89 4 95 277 68 36.0 1e-11 MKVIIFGGSGFLGQQIAKILVQRQHQVISVSRHGKPATLSASWSHQVQWVCSDVTRDTNW QEQVQRADWVIDTVGILFENPRKKKTYQRLILTPVKKISSFLAQQKKPAKFLFISANTVP FPLRKYMDAKLAAEELIHQEVAEAVIFYPSLLVGQERTGTILFSKCIYFFKKIPFLKNLF IGYDPVPVAEMAQEIVHVLEGGNSIYTHRRTL >gi|307679305|gb|GL456422.1| GENE 79 70531 - 71646 957 371 aa, chain + ## HITS:1 COG:L125707 KEGG:ns NR:ns ## COG: L125707 COG0665 # Protein_GI_number: 15673855 # Func_class: E Amino acid transport and metabolism # Function: Glycine/D-amino acid oxidases (deaminating) # Organism: Lactococcus lactis # 1 365 2 366 373 399 56.0 1e-111 MKKIAIIGGGIIGMTLANYLDPQKFDITVYDEGLGQATKASAGIISPWLSKRRNKKWYQL AREGAALFPKLVKDFQLTEDIYRQSGTVILRPAAALADLAHLAEERKQTAPEIGEITMLS AVQTAKFLPLLKETPSLFISGGGRLDGPAYLNHLQKRAEAKGVTFCSQRAHFRQLNQGWE IVTNSEKKSVDFLALTPGPHLKELLATLNLSVDIRPQKGQLLVFETPFTNSQQWPVAMLD GEADLIPFNQGKILLGATHENEQAWDLEETVSAFQQLTSGTAPFLKEAEQLFKQPMHYRV GTRAYTSDFAPFFGPLPEMPHLVVASGLGSSGLTTGPFIGYQLAEYFNTGAFKGELYQKP LSQYVKNNPSL >gi|307679305|gb|GL456422.1| GENE 80 71713 - 72867 1513 384 aa, chain - ## HITS:1 COG:L33416 KEGG:ns NR:ns ## COG: L33416 COG0246 # Protein_GI_number: 15672006 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol-1-phosphate/altronate dehydrogenases # Organism: Lactococcus lactis # 3 380 4 385 385 417 57.0 1e-116 MNAVHFGAGNIGRGFIGEILAKNGFHITFVDVNETIIQALKERKSYTIELADASHQQINV ENVTGLNNMTEPEKVVEAIAEADLVTTAIGPNILPRIAELIAQGIDARAEANCQKPLDII ACENMIGGSTFLAEEVAKYLKNPAYAEQWIGFPDAAVDRIVPLQKHEDPLFVQVEPFCEW VIDDTNRKAKEIQLEGVHYVADLEPYIERKLFSVNTGHATVAYTGALLGYQTIDEAMQDA LVVAQLKSVLQETGKLLVAKWNFDEQEHAAYIEKIIQRFQNKYISDAITRVARTPIRKLG AQERFIRPIRELQERNLVSPHLLAMIGIVFNYHDPEDEQSRQLQEMLDQESVDTVIAEVT GIEDPETVKNIKQNVERYARPQVA >gi|307679305|gb|GL456422.1| GENE 81 72882 - 73319 587 145 aa, chain - ## HITS:1 COG:L32907 KEGG:ns NR:ns ## COG: L32907 COG4668 # Protein_GI_number: 15672005 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol/fructose-specific phosphotransferase system, IIA domain # Organism: Lactococcus lactis # 9 140 8 139 143 174 65.0 6e-44 MENLTNISIELNQQFNTKEEAIRFCGEKLVEAGCVEPAYIEAMIERDQLLSVYMGNFIAI PHGTEEAKKLVKKSGICVVQVPEGVNFGTEEDEKIATVLFGIAGVGEEHLQLVQQIALYC SDMDNVVQLADALSKEEITENLAIA >gi|307679305|gb|GL456422.1| GENE 82 73334 - 75106 2070 590 aa, chain - ## HITS:1 COG:SP0394 KEGG:ns NR:ns ## COG: SP0394 COG2213 # Protein_GI_number: 15900314 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannitol-specific IIBC component # Organism: Streptococcus pneumoniae TIGR4 # 7 584 2 585 589 605 58.0 1e-173 MEQVPEKNKVSIKAKVQRLGSTLSSMVMPNIGALIAWGVLTALFIPDGYLPNKAFATMVG PMLTYLIPLLIGYTGGKVIAGDRGAVVGAIATMGVIVGTDIPMMLGAMIMGPLGGFTIKK FDQYFQHRIKAGFEMLVNNFSAGLIGFALALLGFSAIGPIVDALTAAMARGVEIILNAHL IPLTSIFIEPAKVLFLNNAINHGILTPLGTEQVLSAGKSILFLLEANPGPGLGVLLAFMF FGKGAAKSSAPGAIIIHFLGGIHEIYFPYVMMKPLLFLSVIAGGATGSLVFQTLDAGLRA PASPGSIIAILAMTPMGSYLPVILGVLAATAVSFAVSAVILKADAKEESDEFAQKVKETQ AAKAASKGLTVTNGSASLSGIQQIIFACDAGMGSSAMGASILRKKVQEAGLVQTVTNRAI NNLTDEGNTLIVTQAELQERAKQKAPNATFVAVENFLNSPRYDEIVAELSGTKEKNDAQP TVSKATPASEIEGDLANVNEILLVHDDRVGSATMGMKVLEEILDKEKISMPIRKININEL TQQTQALIVTKAELTEQARKKAPKATHLSVKSMVNPQKYETVVSLLKESA >gi|307679305|gb|GL456422.1| GENE 83 75352 - 75447 159 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYEIVTKILVPIFVGIVLKLVTIWLEKQNEE >gi|307679305|gb|GL456422.1| GENE 84 75717 - 76151 495 144 aa, chain - ## HITS:1 COG:L32907 KEGG:ns NR:ns ## COG: L32907 COG4668 # Protein_GI_number: 15672005 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol/fructose-specific phosphotransferase system, IIA domain # Organism: Lactococcus lactis # 3 139 2 139 143 124 43.0 6e-29 MFEITAEQIMLNQSYASWEEALAASGELLLKNQLVTPDYVKAMYQRQQKVSVYIGNFVAL PHAEGQDEQVLKEGICFIQVPDGVNFGTEADRKIATLLFVVALKSQRQLSMLQELAFFCS DLENIQRLSDCRTIDEAQKILAQA >gi|307679305|gb|GL456422.1| GENE 85 76162 - 78195 1811 677 aa, chain - ## HITS:1 COG:BS_ydaA KEGG:ns NR:ns ## COG: BS_ydaA COG3711 # Protein_GI_number: 16077483 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus subtilis # 1 676 1 689 694 235 27.0 2e-61 MFLTTRETVLLTELVNSPTPVSVNRMMNLLKVSRRTVYRELENLETSLASMGATLEKVAR GRFSIQADEAAMTEIQAAILGEETQELSTLARQHAILLTLLQTKEPVSMHYFLETYCISN TTFYADIKQLETRIARIPLTISRNQGYEVTGSEKYRRLLMANILSMEINEYQFFHFTELT TNDHFFFQFIHAEHLAFAQKIVQPEVETLFPALSDRKLQHLILMLTIAMDRVTAGFYLAD ETYTGQMNKAFLNCSKRLFSKVAAETKQLYAVSEIVFFASLLSDFSNSFDEDFFDEHFDT QLAYEVKQLIEAVSQETEVNFFEDTNLYKMLLTHLSGVFSRAVLQEEDLTNPILERIMNQ YQEIAAALRQALPQIFPQKNLSEEEIAYMVLHFANSLERSPKIMEVDIAGFSPSGLASTS MLEMRLRRYFPFINQIHFFRIADLGKVNVEENYDLVISTSLLPGYNGKYKLISPLLLDDE IRQLKEEFKRISHEKRSLRKAPVKKIGGEESYETVVAFMEEISKLLETFFIADLNNQADL AETVQQALAQLSADLITDSAIVCQQLMKRYEQAPIGIPQTEMALFHTSSTAVTQPVFCIF NLAQPLMIEGMDKKPMQLQRMLLMLAPMPIDETIGKILGKISGAIIMNDLNTEIFHSGNE AIVYQLLSSLLIEEMKG >gi|307679305|gb|GL456422.1| GENE 86 78186 - 79928 1414 580 aa, chain - ## HITS:1 COG:SP0394 KEGG:ns NR:ns ## COG: SP0394 COG2213 # Protein_GI_number: 15900314 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannitol-specific IIBC component # Organism: Streptococcus pneumoniae TIGR4 # 22 570 11 582 589 372 39.0 1e-103 MKEKEMHSLFFKHKFVKVTPYLRRFGHRLSGMIMPNLSIFIAWSLLSLVAGYTTGNLRLA LSEVETIMIRVVLPILIGFTGGKMFEEQRGGVVAAIATVGVIVSTDVPQLFGAMFIGPLA GYTFAKIEQILLPKVKEGYEMLTKNFLAGIVGGLLCCFGILVVAPAVESASFWLYQFSSW LIEANLLPLVHVFLEPLKVLFFNNAINHGLLTPLGLEGASQTGQSILFLLETNPGPGVGV LVAFLLFGPVGQRKTAGGATMIQLIGGIHEIYFPFVLMDPRLFLAVIAGGMSGTLVFQIF NVGLSAPASPGSLVAILANAPTDARLAVFSGIFVSFLCSFAIASLLLKRQRGIEPVSMIK MKEEDQVETVTPNYQQILFVCDAGMGSSAMGASLLSRQLKAVDLEIPVTYQSVHQMKWQP KTLVVIQAELKQLAQKYVPEKDMVSVQNFLEIKSYYPQVLAKLTASSQEQSSLGSESTET NPTKQIQKLVFLYAENVRGSQTMGMELLRQQAAKQGVAIEVSKEPLETVFFTKETTYVVT RELAQAYHLDLTQQNLYVVTSFLNKKEYQEWLEGGADRCF >gi|307679305|gb|GL456422.1| GENE 87 80112 - 80945 634 277 aa, chain + ## HITS:1 COG:lin2847 KEGG:ns NR:ns ## COG: lin2847 COG0561 # Protein_GI_number: 16801907 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 1 277 1 277 279 304 54.0 1e-82 MAIKAIVMDIDGTLLTSEKKISPKTRQALVVAQKQGLSLILASGRPTNGMRPLADELEMA HYNGHLLSYNGACVTHHGSQQQLFNQTISKSLSQQILEHLKQFDVIPMINDETFMYVNDV FHNTLHLETGDFNIIEYESRGGNFQLCEWRDLAARLNFPLNKILIAGEPAYLQKYHEAIY APFKETVTAAFSAPFYFEFTAKNIDKARSLEKLTLQLGITAEEVIAFGDGHNDYTMLEWA GTGIAMENAVDELKSIATEVTLSNDNDGIAVALTNFL >gi|307679305|gb|GL456422.1| GENE 88 80988 - 81623 813 211 aa, chain - ## HITS:1 COG:L102062_2 KEGG:ns NR:ns ## COG: L102062_2 COG0778 # Protein_GI_number: 15673454 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Lactococcus lactis # 16 211 1 196 196 289 73.0 2e-78 MTTYTTNDFSEIVFGRKSVRVYDETHKISHEEMLTMIQEATTAPSSVNMQPWRFVVVESE AGKEKLKPLIRFNTRQNETSSAMLLIFGDLNCHERGEEIYNQAYASGKMPKEVRDQQLAA IIPHYESLSREQMNDIVKIDASLAAMQFMLVARAHGYETNPIGGFEAEKLAETFGLDQER YVPVMILSVGKGMETGYESVRLAPEKITTFE >gi|307679305|gb|GL456422.1| GENE 89 81628 - 82062 509 144 aa, chain - ## HITS:1 COG:L102062_1 KEGG:ns NR:ns ## COG: L102062_1 COG1846 # Protein_GI_number: 15673454 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 3 109 1 107 160 100 55.0 6e-22 MSLSLREVSQLLCQLKVLDQKITKVFEEQVGLSLTRYELLMILKERQPCLQTEIQEHLKI DSGAVTRHLKILEEKQYVTRQRNPENNREVLVHLTEKAQQELQQCTAKQQTVTEIIPSTF TKDDCRQLKELLTKLDQSITTKEV >gi|307679305|gb|GL456422.1| GENE 90 82214 - 83617 1700 467 aa, chain - ## HITS:1 COG:NMA0715 KEGG:ns NR:ns ## COG: NMA0715 COG1757 # Protein_GI_number: 15793692 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Neisseria meningitidis Z2491 # 14 458 14 458 459 288 36.0 1e-77 MKEKQKKKTVSVREASIVLLIIVAAIATGVIGLKISPNITILFVIALILGYAMFRKVPFD QMHKGIVDGLKPGIIPIFIFILVGALIAVWIQAGIIPTIMVFGFKMISVKWFVPSVFIVC AIVGSAVGSAFTVMSTIGIAFFGIGSTLGLNPALVVGAIVSGSVFGDKMSPLSESTNLAA AIVEADLFKHIKNLMWSTVPAFIVSLILFMILGQTYANTSLTEVVQVIQVLEDHFTISIW SLLPLALMLICAWRKIPAIITILLNIIVAVIMIIIQNPKVSLQALGNTLENGFVSQTGNA QIDQLLSRGGIMSMMPTVALIILTLSLGGLLMELGLISAVMEVVSQKMSSTPKLILSTLL TGIGVNIFIGEQFLSVILPGNAFKEVYKKEGLDPTVLGRTLEDGGTVINYLIPWGIAGSF VAGTFGVPTLTYLPFVFFSLLSPVFSMVSAFTGLGIKRLSVEPVTEK >gi|307679305|gb|GL456422.1| GENE 91 84160 - 84801 884 213 aa, chain - ## HITS:1 COG:SP0860 KEGG:ns NR:ns ## COG: SP0860 COG2039 # Protein_GI_number: 15900744 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) # Organism: Streptococcus pneumoniae TIGR4 # 1 213 1 214 214 236 55.0 2e-62 MKVVVTGFDPFGGEVINPAFEAVKKLPAEIAGAEIIKVEVPTVFGTSGEKVAEAIETHQP DMVICVGQAGGRQTVTVEKVAINLAEARIPDNAGQQPSDVPLVEDGATAYFTNLPIKAMV KNCHDHQLPAAISYTAGTFVCNDIMYHLLHLINTKYPTIRGGFIHVPFLPEQTIDKPTFA SMSLEAITDSLFYMIEAAVKTQEDIQLQGGTTH >gi|307679305|gb|GL456422.1| GENE 92 84817 - 85761 1050 314 aa, chain - ## HITS:1 COG:SPy0507 KEGG:ns NR:ns ## COG: SPy0507 COG3817 # Protein_GI_number: 15674612 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 15 313 8 305 308 207 41.0 2e-53 MSFFTDPSIDLSAKLLEVLYIFMGIILLYTSFRSFRDKTNQHAYGTSLFWGILGILIGFG RFIPPVACGVLIFVMTIPAILQKVTKGESRLPSKEYMEKMSQKLGMKIFIPALSIGVFAI LFATLTTLGALVGVGVGVFVAIFIMMFFSKNNTPKVFFDDAAEMLETVGPLSTLPMLLAC LGAVFTSAGVGEIISKGVSAVVPAGNVNVGIIIYAVGMVIFTAIMGNAFAAITVMTVGIG VPFVFSLGADPALVGMVALTCGFCGTLLTPMAANFNIVPVAMLEMKDKYGVIKNQLPIAL FMLIFQIVYMILFK >gi|307679305|gb|GL456422.1| GENE 93 85763 - 86443 785 226 aa, chain - ## HITS:1 COG:SP0858 KEGG:ns NR:ns ## COG: SP0858 COG3819 # Protein_GI_number: 15900742 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 1 217 1 218 229 129 38.0 6e-30 MDLLPLLGVLIVIVGFALKFDAILIVMVALIVTAFTGGLGLTSMLETLGTTFVNNRGMAI FIIIMLATGTLERNGLKESAATLIKRFKKVSAGVIIDIYGVFRIIFAAFNVSFGGVAGFV RPIILPMALGTIESKNLPMVPEYEEELKGMASAMENICWFFGQVLFVGGAGALLVQSTLK DLGYEVTLGKLALVEVPVALVALISASIYFTLKEKRLRKNIMDRRD >gi|307679305|gb|GL456422.1| GENE 94 86458 - 86559 80 33 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLETVSLEKITLKIKKVLQMSENWHIMESEILF >gi|307679305|gb|GL456422.1| GENE 95 86636 - 87151 463 171 aa, chain + ## HITS:1 COG:no KEGG:EF0397 NR:ns ## KEGG: EF0397 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 171 1 171 171 248 99.0 6e-65 MFQTFRENFRRHTLLRDAVFIVIGSAIVFNPGAFFQFAGYLIAGYLMLLGLINIYDDYKI KKQTGSWGLGFVTGLIFVVLAVAFLFFAPVIVSILPFLLGISIVINGLVQLTFALNTRQT GALIYSILVLIAGAVLVFNPFKSLLVLMQVFGFILIFMGVIEIIGHFRNKA >gi|307679305|gb|GL456422.1| GENE 96 87167 - 88351 1196 394 aa, chain + ## HITS:1 COG:SA1192 KEGG:ns NR:ns ## COG: SA1192 COG0628 # Protein_GI_number: 15926939 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Staphylococcus aureus N315 # 6 383 18 393 402 265 35.0 1e-70 MDKESTKWIRFLGGKNLLYTLTILCLIAVTIFLFNTVSFIFKPIFVIFSAVLGPVLFGII LFYLLNPMVKRLEKKIPRVWAIAILYVLIIALLVLAGLQLFPIIQDQTEELIKQFPSFWK STLQTVQEFMAKTPFAKDLESANESINQLWGKLANSFKDFAGDYLQTGAQGLGSVFSAVS STFLTLFTGPIIAFFLLKDKEKFYRFVKGIIPPAFRPDFDEYSQIANIQIGDYLKGQVIA SLVLGIMYWPAFLLIGLQFGSILALAAGILCIIPYIGPFIAFIPGLIIAFQDSTFMVVKF VIVWFAIQLIHGDFVIPRVMGDKLKVHPITILLVLLVMGELFGLMGVIFGIPMYCLVKVT VIYLFRKFKQRYNRFYGDNGEYEHTNFTKDQYLK >gi|307679305|gb|GL456422.1| GENE 97 88403 - 89530 1413 375 aa, chain - ## HITS:1 COG:lin0838 KEGG:ns NR:ns ## COG: lin0838 COG0620 # Protein_GI_number: 16799912 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase II (cobalamin-independent) # Organism: Listeria innocua # 1 375 1 365 367 363 49.0 1e-100 MSSQIPFTVDHVGSFLRPETIKKARKKVQAGALSQAELRLIEDEEIKALVAKQKAGGLRG ITDGEFRRGFWHIDFLEGLNGVTGYIPETGYNQTFHGKAAPAYNIRVVDKISFPAQHPFL EDFSFLKEVVEVGDGTVAKATIPSPTMILRQEILSNDGTSRIQTIYPEIGDFYKDLAQTY KDAIAAFYERGCRYLQFDDTNWAFLADQTKQEELRAKGIQPEEIAQVCTTIINEALDGKP EDLTVTTHICRGNHASSWLFSGGYEPIAKELFATNYDGFFLEYDSDRAGDFSPLRHWQNN GSKVVLGLVTSKFPELEETEQVKARIEEAQQFVPLENLSISPQCGFASTEEGNRLTEKEQ WRKVQLLQEIAREVW >gi|307679305|gb|GL456422.1| GENE 98 89938 - 91305 1669 455 aa, chain - ## HITS:1 COG:SP2216_1 KEGG:ns NR:ns ## COG: SP2216_1 COG3883 # Protein_GI_number: 15902020 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 270 1 269 270 105 37.0 3e-22 MKKRLFASVLLCSLTLSAIATPSIALADNVDKKIEEKNQEISSLKAKQGDLASQVSSLEA EVSSVFDESMALREQKQTLKAKSEQLQQEITNLNQRIEKRNEAIKNQARDVQVNGQSTTM LDAVLDADSVADAISRVQAVSTIVSANNDLMQQQKEDKQAVVDKKAENEKKMKQLEATEA ELETKRQDLLSKQSELNVMKASLALEQSSAESSKAGLEKQKAAAEAEQARLAAEQKVAAE KAKQAAAKPVQAKAEVKAEAPVASSSTTEAQAPASSSSATESSTQQTTETTTPSTDNSAT ENTGSSSSEQPVQPTTPSDNGNNGGQTGGGTVTPPTPEPEQPTPAPSADPTINALNVLRQ SLGLRPVVWDAGLAASATARAAQVEAGGIPNDHWSRGDEVIAIMWAPGNSVIMAWYNETN MVTASGSGHRDWEINPGITRVGFGYSGSTIVGHSA >gi|307679305|gb|GL456422.1| GENE 99 91762 - 94056 1471 764 aa, chain - ## HITS:1 COG:no KEGG:EF0392 NR:ns ## KEGG: EF0392 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 764 1 764 764 1422 98.0 0 MKRSKWKELIVTGICHILVFPILIQTTVFAETLPSTKQVREGTNHSLTAEKAKSEQPQTK DKLHDEEPLALPKSELIDNEANVTSQTIRERIETPNLTYRYGFINEEGQPVNANEILLQY HSWQGNSPNGINVWEGESQPVTASTVANLKEVVIPSEKVAVYSDMSTVLAASNQTFFLPR YYTSLSLYNKKGEIDPNYPLPTISDASGNQYPTTISQFELEKMSAQQYSQKTGVTFNISE SQKLIVPLYNQVKVDSSNQSGLLNYFKFSGPVYYHVTNRKVTEHFVDTQGKPIPPPPGFR QGKQTLIERDPYAFKQNGLLPSSYEIDSKTYQFQGWYKGKTKPENLEKSVTPSYDITYDD NDDLTVVYKEVPQKNYTFEDVNGVEIAPPSDFIQDHQQPITTDGFRYLAEKKLPQQYSVN GKTYLYQGWYQDKTKQESLEKTKRPINSPVFNEMNDITAVYKEITAKAEMQIEGLVKVMP SGYIQIWQIMLTNVGEVPLKKINLKPASGWSPGLARPIQVTIRVGSEPNKIVPITDENWR VGIALNTEVPIGQTATIMMTTIATGESDQVLQAAVEMNGNFSAVHAADTVRIQPKNQEIV APDKEGFISTPTFDFGKVAISSNTQQHGLKQAADYYENGQENPYLRLKKSQPNWALTAEL SPFEGRVDQLSSMTKLLLGTTNVSGFIQYNQPTETKVALGKTTAIQLVANGVASHIVANG QFDESDVYQFDFSFDQIKLEIPANQGRKDQTYQAMVTWNLVTGP >gi|307679305|gb|GL456422.1| GENE 100 94262 - 94417 87 51 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MINLSCFSYDSLLKSLFSVYFWSIFLDIYIESSGNAPVCLKFGISEIILFC >gi|307679305|gb|GL456422.1| GENE 101 94506 - 95729 1751 407 aa, chain - ## HITS:1 COG:SMa2371 KEGG:ns NR:ns ## COG: SMa2371 COG0402 # Protein_GI_number: 16263735 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Sinorhizobium meliloti # 2 403 3 407 432 241 34.0 1e-63 MDLLIKQVRLQDGEALQDVAIKEGKIIEIAPVITGDAKEVIEADGRVLIPGFVESHLHLD KALIADRKPNKSGTLKEAIEVTAELKPTFTEEDIYDRAKRALEMLIVHGTTALRTHAEFD PAQGFTGFKTIMRLKEEYKELIDMQVVAFPQEGIFKAPGTEQMMYEAMDMGADVVGGIPY NDAPAKKHIDLVFEIAKKYDKDVDLHQDFADEADDMSIEYLCEKTIAEGYQGRVSVGHLT ALHALPEAELAPIIAKMAEANISVMALPATDLHLGARGDQYNVRRAVTPIRKLRDGGVNV CIATNNIRNAFTPYGTGDIVQTAMLAIPVGHLGGADDLKTVLPMVTTSPARAMGLEGYGV AVGNKADLVLLDTKVVEHAIIDIPERLYVIKNGRVTVKTDKKVEIIR >gi|307679305|gb|GL456422.1| GENE 102 95754 - 97109 1735 451 aa, chain - ## HITS:1 COG:no KEGG:EF0389 NR:ns ## KEGG: EF0389 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 451 1 451 451 663 100.0 0 MKKSSKVALIFAFLVSIFVPVAAFADEIGDVVAPTGIMALVVIIPLIVVLVLLFMKVDMI IAGLIGGVLAMLIGGIGLEEANKQMLEAIPMMLGITVPIINSAVAMAVFKAGSYSAALTL AKRGTKGKVEYVSAFIVILLAAATYMSGIGGGSAMVIAPLAFAAVGVVPELIAAMSLAAA VSFTTSPASLESSIVSKLGDISVGSYVSTMRPYWLFFVALAIVLAFWGTKHRNVGFKESA DDEFDKKSNGELFKITLPAIFLLFAVIFGPIVNDLIGFAFFTPLVYMILTLVLIFLCTDF SMNKSVEAMVDGSTYILTRLFQVGIFLAFINVIAQTGTFAVIAGVAENAPAFIVVPVAIL TGILIGIPAGAYVGSVLTLVLPVAVSLNFPPLALGFVAMGVGLGSQMSFVNITMQALSSG FQIPILDVVKGNVKWLSIASVLLLVIGLIFG >gi|307679305|gb|GL456422.1| GENE 103 97175 - 98236 1325 353 aa, chain - ## HITS:1 COG:ylbC KEGG:ns NR:ns ## COG: ylbC COG2055 # Protein_GI_number: 16128501 # Func_class: C Energy production and conversion # Function: Malate/L-lactate dehydrogenases # Organism: Escherichia coli K12 # 7 353 3 349 349 405 55.0 1e-113 MEEMVVVTPEKLEKLMKQKLEAAGLHSEHAEEVARHLTFADASGIHSHGAVRMDYYAERI AKGGITIDPELSFEKTGPSTAIFHGDNGVGQFVCNEALAAAVDLAKESGLAYVGVSQTSH SGTLSYYVKKAAEQGMVALSMCQSDPMVVPFGGTSNYFGTNPIAFAAPRAGHEPVVFDMA TTVQAWGKILDARSRDVEIPDTWAVDEKGQPTTDPYEVRGLLPISGPKGYGLMMMVDVLA GSLLGLPFGKHVSSMYADLTEKRNLGQMFLVIDPSRFTDSERFKENINQMVEELHCVPTA EGFQQVYYPGEIGQLNYQKAMSEGIEIPQSIYDYLVSEIVHYDKYGGQGAFAK >gi|307679305|gb|GL456422.1| GENE 104 98326 - 99546 1098 406 aa, chain - ## HITS:1 COG:RC0223 KEGG:ns NR:ns ## COG: RC0223 COG1301 # Protein_GI_number: 15892146 # Func_class: C Energy production and conversion # Function: Na+/H+-dicarboxylate symporters # Organism: Rickettsia conorii # 9 403 6 399 399 186 29.0 9e-47 MKKPSMITQIAIAVVVGILVGLLIPASGNYLKIVGDVFLRLMQMAIPILILGQIVQAVGS INPKELTSLGGRTIAVFGISSLAAALWGVLMAVIFNPGYGVKMTGFQDASIKAQEISITD TILNFVPKNIFDSLTQGSIIQIIVFALFFGLALNKYLQSHPETQLFQIIVDFNEVIITVI RYVMYLAPLGIFALIASTISHLGLQIILPLVKYLLVYGLGTILFLGIWILVITLYCKVSP LRLITNMKNMSVMALATTSSAITLPVALEETETKLGLSKRITNLVLPLGMSLNSNGSAMH MAFTVMTIAQMYQLDFDITKMIYLAITATFVSLANAVVPGAGLVSLAVIVPQMGLPIESI AIFAGVEWFVGMLRTILNVNSDVYSAILVAKSVDEIDYTVFNSSNK >gi|307679305|gb|GL456422.1| GENE 105 99553 - 100491 1256 312 aa, chain - ## HITS:1 COG:L92850 KEGG:ns NR:ns ## COG: L92850 COG0549 # Protein_GI_number: 15674015 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Lactococcus lactis # 5 308 6 312 314 305 53.0 8e-83 MSLNVIALGGNAILDTDPTDEGQKAVVNHAAKYIAEFVAKGEQVIVCHGNGPQVGNLLLQ QKAGESEKNPALKLDTCVAMTQGSIGYWLQNALTNEFEKRNIAKPVISVVTQVRVDKEDP SFKKPSKPIGPFYTKEEADAEAAKDGSTYVEDAGRGYRKVVPSPMPKEIVEKEAVRALVE ADVLTICSGGGGIPVVAEDGQYVGVEAVNDKDFSARVLAENVDADRLIILTGVDNIYINY NQPDQKALEQISVAEAEEYIKEGHFAAGSMLPKIEAALDFVKGDDKRKAIITSIENLENI DKEAGTVISQKG >gi|307679305|gb|GL456422.1| GENE 106 100626 - 101879 1614 417 aa, chain - ## HITS:1 COG:STM0520 KEGG:ns NR:ns ## COG: STM0520 COG0477 # Protein_GI_number: 16763900 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 16 405 11 399 415 219 34.0 9e-57 MENSKKNQAVQVSNSYWIKVVAIFFVGWILMYATRTIFNPVMGVIGEQFGLSNTQLGLAN SIFFLTYAVAQIPFGMIGDKIGRKLVIAVGFIVLAISTYFSGLATTFVMFLVIRAIAGIG QGAYYGPQYALSTEAIPASKRTIGNAIINSGMAFGTSGGYLLSSKLVLENGEHWSKPFFI MAIPTFIVGILFYTILKEKVIRPGEEAARAAAEEGPQEKISLKEIFSNRNLLAAFILCFT SIYANFVIITWLPQFLIAERGFTGASVGFISSLVPWASIPGALIFARLNDKTGATKKLVF TLVPLAILSVFAIAFVTNRTLLISVLILYGLTGKLALDPIMVTFVTKHAPKAALGTTLSA YNFIGMSGSILAPYVTGYLADTAGSMQVGFYLSCVLLVIGLLAFAFLAKDESKPKLG >gi|307679305|gb|GL456422.1| GENE 107 101889 - 102722 587 277 aa, chain - ## HITS:1 COG:no KEGG:EF0384 NR:ns ## KEGG: EF0384 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 277 1 277 277 467 100.0 1e-130 MNNQLVISDYIFPIHQYGKMGTIHSVFERSFNLKVQDQLINVANFHNYLSSFGMFLPDQL FQEIFPYVQQGNKVKITENQLTFYSTVGVKTIQLTPAEVVSLNITHFKLEKDQLRLLRDR LLARNLERRIGLPLDERAKHIFKKMSQKQKVWTLSEWQEVTNYLIGRGKGLTPSGDDILV AYQTILFILADERAAALAATLSAANLSTTDVSKGYIASSAKGYVNSLLYQLLLDLENHRD NRVDENIDRIIQIGHSSGKDMSFGMLLALQSVELDEK >gi|307679305|gb|GL456422.1| GENE 108 102715 - 105726 3779 1003 aa, chain - ## HITS:1 COG:ECs0580 KEGG:ns NR:ns ## COG: ECs0580 COG0074 # Protein_GI_number: 15829834 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, alpha subunit # Organism: Escherichia coli O157:H7 # 1 579 1 555 555 370 38.0 1e-101 MLHTVILKNNYQDSINLMLLTNKINALDGVTMSQIMMGTDANKDILNNTNLLTDEANSAS ANDMMIVVDSEKENIMEEVMPAIDEFLDDLSAKGTSEETQAATSWSEAFDLLPEANVALF SIPGEYGAPEMERALKNDLHVFSFTDNVSIEDEVRLKKLAHEKGLLMMGPDCGTGIISSI PIAFTNVVSPGNIGVVGASGTGIQEVTTIIDRLGGGVVHAIGTGGRDLSDKVGAITVKDA IVALENHEPTDVITVISKPPAKEVRDEVVELLQSISKPVVAIFLGEKPTSHEGKVYLAHT LEETAKIAVDLANDVAVKKNYFEALAKPAVPTLPEDKVVKGLYSGGTLASEAGMLISEAL DLGGLVKAEGYVLKSHGYEVIDLGDDMYTQGRPHPMIDPDVRIEKIREYAQDEKTGIILF DVVLGYGAHEDMVGALLPAIEEARATAKEAGRDLYFVATVCGTTKDPQNYQSSVDRLKEG GVLVAESNAKAVQLALLLKGIEISEDDKEVVAYNGPTVDVPKPGEKVMELLTTKPRIINV GLQSFTESIVDYGGETVQFNWRPRANGNKKMIKILDALEDYSEQIEAENHKVTDKIKNAQ PFLVDVVPAKSVIPELNDDAQKTLLHAGPPIQWSEMTGPMKGACIGAALFERWADNEEDA LKIFEAGEVRFIPCHHVKAVGPMGGITSGNMPVFVVENRLEGNEAYCILNEGIGKVLRFG AYSQEVVDRLDWIKDVLGPTIAKALKLSEEGLNLNVLIARSITMGDEFHQRNIAASLNFL KELSPLIIKTDIPEDQKYEVIKFLADTDQFFLNVMMATGKAIVDGARKDTNGTIVTTMTR NGVNFGVRIAETGDQWHTAPVNTPKGLYFTGFSEEDGNPDVGDSAITETVGVGAMAMVAA PGVTRFVGAGGFEDALATSNEMAKICEGHNPTFSIPTWDFQGTCLGIDIRKVVELGITPI INTGIAHKNAGVGQIGAGTVRAPLGCFEKALEAYAEKLGITVE >gi|307679305|gb|GL456422.1| GENE 109 105849 - 107441 1023 530 aa, chain + ## HITS:1 COG:BS_yunI KEGG:ns NR:ns ## COG: BS_yunI COG2508 # Protein_GI_number: 16080295 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Bacillus subtilis # 1 520 1 528 531 103 22.0 6e-22 MKLRELLSIGDLKKGKILTKEIGLDNEVDSAMVLEAIDIENWSRKNQLILTSFYALHDLP EKELENFFVKMRRIGISGLILKTDRFIKMIPEWFIELCFNYEIPLIKITQDISYEKILFT IYEPLLNYQSHVLRTYYDVRQRFTKLERHYPTVETIMQEFYDIIKLPFALKMLDKHLEIS DGDLPHDAIVLSREKLKNSEFTKNDYSLLTLYSHANPKKQLALEVSIFNSYSTNCLLLVY LQDEKVKETDLVIIENAIDVLQEKFNTENLLKKERYTRLNNLADAILQNTPQNPDELNSL LREVQMQELDSYQAIAFSTKDTNTQLMKERIIALLRTLRVKSIFFDQLNYSAVLFNFNES DGKITKLQLSRLLAELLEENDTLTVAVSSLKSREGIKELLIECLDILRFNETFYNGPIVT LADIGVFKNFIREDQLENLDELIPRALYQLAENNYDLFETLYSFFQNNRNYKQTSEAMFL HSKTIRYRLNKVEQLLDIDLANPLQLLNYEIATYIIKMRRRALEKQSNTR >gi|307679305|gb|GL456422.1| GENE 110 107416 - 108228 641 270 aa, chain + ## HITS:1 COG:SA0310 KEGG:ns NR:ns ## COG: SA0310 COG0657 # Protein_GI_number: 15926023 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Staphylococcus aureus N315 # 14 267 19 269 275 105 29.0 1e-22 MKNNQTLANGATVTIYPATTESTNYVVYLHGGGMIYGTKSDLPEELKELFTSNGYTVLAL DYLLAPNTKIDHILGTLTETFQLLNEAIIQNQPFGLCGRSAGGYLMLQLTKQLQTLNLTP QFLVNFYGYTDLEFIKEPRKLLKQAISAKEIATIDQTKPVWDDPFLSRYLLYHYSIQQAL LPHFYGLPENGDWSAYALSDETLKTFPPCFSTASSSDEEVPFRYSKKIGRTIPESTFKVV YYLEHDFLKQTNDPSVITLFEQLDSWLKER >gi|307679305|gb|GL456422.1| GENE 111 108267 - 109460 1388 397 aa, chain - ## HITS:1 COG:ECs0373 KEGG:ns NR:ns ## COG: ECs0373 COG0402 # Protein_GI_number: 15829627 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Escherichia coli O157:H7 # 18 395 75 455 460 212 35.0 1e-54 MKVSSKYILREGDWLSGTVTKEVAIEVTDGVFTKIIPNEELVEEPGLTIIDGHHQLILPG LIEKHCHFDKSKLGVPWYPVTPAKSIVERVEAEIPYLDSLELSLTERANHLIDLELPHGA TAFRTHVDVEPMTDLRYFDEVQALAQTKPFAVEIVVFPQHGLLRSDSVELVDQALAKGAD FIGGVDPYSLDGDYKKSLAETFRLADKHGVGVDIHLHDRHEAGTTTIKEIIRLTKEYGLQ DKVFISHAFGLNDFIGEERAEVYDALAAEKIHINSSVPITPNTIPPIMELLRHGVNVHLG CDNIYDCWSPYGDGSLQEKLARLGELFNVKDQDALTQLLGLVTDGVTTLDEQGQANWPQV GAEATYLLTEAECAAAFVARQTPVEISVVKGTTLYQK Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:44:32 2011 Seq name: gi|307679304|gb|GL456423.1| Enterococcus faecalis TX0411 genomic scaffold Scfld61, whole genome shotgun sequence Length of sequence - 932 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 931 1054 ## COG1087 UDP-glucose 4-epimerase Predicted protein(s) >gi|307679304|gb|GL456423.1| GENE 1 1 - 931 1054 310 aa, chain + ## HITS:1 COG:lin2620 KEGG:ns NR:ns ## COG: lin2620 COG1087 # Protein_GI_number: 16801682 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Listeria innocua # 1 310 2 311 328 500 75.0 1e-141 MSILVLGGAGYIGSHAVDQLISKGYAVVVVDNLLTGHRSAVHEQATFYEGDIRDKAFLCS VFEKESIEGVLHFAANSLVGESVEQPLMYFNNNVHGTQIALEVMQEFGVKHIVFSSTAAT YGEPKAMPITEETPTNPKNPYGESKLMMEKIMKWCDNAYGMKYVALRYFNVAGAKKDASI GEDHTPETHIVPIILQVALGQRAELSIFGDDYDTPDGTCIRDYVYIEDLIAAHILALEYL KNGGESDVFNLGSNNGYSVKEMLDAAREVTGQEIPATIAPRRAGDPSTLIASSEKAKRVL GWQPEVTEVK Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:44:35 2011 Seq name: gi|307679303|gb|GL456424.1| Enterococcus faecalis TX0411 genomic scaffold Scfld62, whole genome shotgun sequence Length of sequence - 942 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - SSU_RRNA 53 - 942 100.0 # AY692453 [D:1..1570] # 16S ribosomal RNA # Enterococcus faecalis # Bacteria; Firmicutes; Lactobacillales; Enterococcaceae; Enterococcus. Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:44:36 2011 Seq name: gi|307679302|gb|GL456425.1| Enterococcus faecalis TX0411 genomic scaffold Scfld65, whole genome shotgun sequence Length of sequence - 1370 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 254 291 ## gi|323481378|gb|ADX80817.1| hypothetical protein EF62_2608 - Prom 278 - 337 6.0 - Term 276 - 337 15.4 2 1 Op 2 . - CDS 352 - 627 362 ## gi|307277177|ref|ZP_07558281.1| DNA binding domain, excisionase family - Prom 755 - 814 8.8 + Prom 626 - 685 6.0 3 2 Tu 1 . + CDS 858 - 1368 288 ## gi|307290712|ref|ZP_07570615.1| conserved domain protein Predicted protein(s) >gi|307679302|gb|GL456425.1| GENE 1 2 - 254 291 84 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|323481378|gb|ADX80817.1| ## NR: gi|323481378|gb|ADX80817.1| hypothetical protein EF62_2608 [Enterococcus faecalis 62] # 1 84 1 84 665 150 100.0 3e-35 METSMINIPIYVDKEKLLEKPVTKKEKTDVRDRCLDNYREVTRDEFVEILNSSQSFIPSK TKNKGNDKESFVETRVIILDVDNT >gi|307679302|gb|GL456425.1| GENE 2 352 - 627 362 91 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|307277177|ref|ZP_07558281.1| ## NR: gi|307277177|ref|ZP_07558281.1| DNA binding domain, excisionase family [Enterococcus faecalis TX2134] DNA binding domain, excisionase family [Enterococcus faecalis TX2134] # 1 91 17 107 107 145 100.0 7e-34 MSLQIIDSIVSIQVEQQVKEIITVLKPMLEDIISGVTLEYMDYQQASEYLGVSVGTIRKY VSQYGLPVIKIDTVIRFKKSDIDSFMERYKG >gi|307679302|gb|GL456425.1| GENE 3 858 - 1368 288 170 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307290712|ref|ZP_07570615.1| ## NR: gi|307290712|ref|ZP_07570615.1| conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX0411] # 1 170 1 170 171 328 100.0 7e-89 MIKRPPINYLERKKILGTKIKAIRKSKKLTQPAFGLMINNGQLIDKKTIYEWEKGTYLPI PERLSRIADLGNMSIEELVCGNVEEYILGIILYRDSIVLDGITFPDKNLFQHLRQQFPPV HSNLDTWLDRYSKLEPEMQEFIANKTCNKVKNEKISLFNILKIEELFINA Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:45:03 2011 Seq name: gi|307679301|gb|GL456426.1| Enterococcus faecalis TX0411 genomic scaffold Scfld73, whole genome shotgun sequence Length of sequence - 18649 bp Number of predicted genes - 17, with homology - 17 Number of transcription units - 12, operones - 4 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 50 - 1213 1298 ## COG0153 Galactokinase - Prom 1236 - 1295 5.2 + Prom 1201 - 1260 6.1 2 2 Tu 1 . + CDS 1433 - 2470 470 ## PROTEIN SUPPORTED gi|15900011|ref|NP_344615.1| aldose 1-epimerase + Term 2478 - 2548 22.1 + Prom 2520 - 2579 4.2 3 3 Tu 1 . + CDS 2601 - 2747 247 ## EF1067 hypothetical protein + Term 2751 - 2811 11.7 + Prom 2788 - 2847 6.5 4 4 Tu 1 . + CDS 2868 - 3506 724 ## COG0110 Acetyltransferase (isoleucine patch superfamily) + Term 3511 - 3554 1.6 - Term 3498 - 3542 6.1 5 5 Op 1 . - CDS 3552 - 3974 482 ## COG2764 Uncharacterized protein conserved in bacteria 6 5 Op 2 . - CDS 4050 - 4529 463 ## PROTEIN SUPPORTED gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 - Prom 4551 - 4610 4.0 7 6 Op 1 1/0.000 - CDS 4764 - 5981 1376 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 8 6 Op 2 . - CDS 5978 - 7201 1170 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 9 6 Op 3 . - CDS 7225 - 8889 1748 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 9007 - 9066 6.7 + Prom 9179 - 9238 6.9 10 7 Tu 1 . + CDS 9270 - 10940 1662 ## COG2508 Regulator of polyketide synthase expression + Term 10945 - 10985 2.1 - Term 10922 - 10981 10.0 11 8 Op 1 . - CDS 10995 - 11420 650 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins 12 8 Op 2 . - CDS 11420 - 13018 1515 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family - Prom 13098 - 13157 7.9 - Term 13223 - 13283 9.1 13 9 Tu 1 . - CDS 13287 - 13799 375 ## EF1055 tunicamycin resistance protein, putative - Prom 14025 - 14084 5.1 + Prom 14175 - 14234 5.1 14 10 Op 1 6/0.000 + CDS 14344 - 16101 1145 ## COG4986 ABC-type anion transport system, duplicated permease component 15 10 Op 2 . + CDS 16160 - 16969 319 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Prom 16976 - 17035 4.5 16 11 Tu 1 . + CDS 17264 - 17515 275 ## gi|229546265|ref|ZP_04434990.1| hypothetical protein HMPREF0349_1482 - TRNA 17541 - 17624 62.3 # Leu CAA 0 0 - TRNA 17638 - 17708 71.3 # Cys GCA 0 0 - TRNA 17734 - 17805 67.6 # Gln TTG 0 0 - TRNA 17820 - 17892 65.0 # His GTG 0 0 + Prom 17760 - 17819 3.5 17 12 Tu 1 . + CDS 17928 - 18200 78 ## gi|47092471|ref|ZP_00230261.1| hypothetical protein LMOh7858_2508 - TRNA 17929 - 18002 68.8 # Trp CCA 0 0 - TRNA 18007 - 18087 72.8 # Tyr GTA 0 0 - TRNA 18093 - 18165 75.3 # Phe GAA 0 0 - TRNA 18211 - 18286 75.5 # Asp GTC 0 0 - TRNA 18297 - 18369 88.0 # Val TAC 0 0 - 5S_RRNA 18309 - 18365 92.0 # AF302131 [D:490..741] # 5S ribosomal RNA # Streptococcus agalactiae # Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus. - TRNA 18397 - 18468 70.2 # Glu TTC 0 0 - TRNA 18486 - 18574 53.0 # Ser GGA 0 0 Predicted protein(s) >gi|307679301|gb|GL456426.1| GENE 1 50 - 1213 1298 387 aa, chain - ## HITS:1 COG:SP1853 KEGG:ns NR:ns ## COG: SP1853 COG0153 # Protein_GI_number: 15901681 # Func_class: G Carbohydrate transport and metabolism # Function: Galactokinase # Organism: Streptococcus pneumoniae TIGR4 # 3 386 8 391 392 457 61.0 1e-128 MEELLMNRFVEIFGEKGTACYFAPGRINLIGEHTDYNGGHVFPAAITLGTFGVARKRDDQ KIRMFSDNFKEVGLIEFSLEDLTYSDSDDWANYPKGVLNYLIESGHNIDSGLDVLFYGTI PNGAGLSSSASIELLMGTICNDLYALHCPMLELVQIGKKVENEFIGVNSGIMDQFAVGMG EKDQAILLDTNNMHYEMVPAKLGEYTIVIMNTNKRRELADSKYNERRAECEEAVRLLQKE LSIEFLGELNSETFEQYQALIGDPTLIKRARHAVTENERTLLAKQALTEGDLEEFGLLLN ASHRSLKEDYEVTGIELDTLVACAQEQPGVLGARMTGAGFGGCSIALVPKQNIDAFIEAV GQSYQDKIGYAADFYPASIDDGARKLF >gi|307679301|gb|GL456426.1| GENE 2 1433 - 2470 470 345 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900011|ref|NP_344615.1| aldose 1-epimerase [Streptococcus pneumoniae TIGR4] # 9 344 14 343 345 185 32 2e-46 MTISTESFGQGMLLYTLTNKNGVTLKATDFGARIVALDVPLTKNESRSLVLGFPSADEYL SKDLYFGATIGRTAGRIADGSFELAGKTYQTMINTPTQTTLHGGTPGFESKKWHSEIQEA QVNPSVKFWLESPAGENGFPGNLTVSVTYTLTEENEWQIEYQATTDEQTLFNPTNHVYFN LTGNPAIPIDAHELQINAQKYVPLDERVLPLGELASVDQTAFDLQKPKKLAEVFSSNDEQ IQKMNGFDHPFILTNHDLINPDVILKSPTKDITLEMFTDQPSVVIFSANFADNGPDIQGQ KLVNHGALTFETQVCPGAERFPLFGSITLSPEQEFHSTTRFKLIY >gi|307679301|gb|GL456426.1| GENE 3 2601 - 2747 247 48 aa, chain + ## HITS:1 COG:no KEGG:EF1067 NR:ns ## KEGG: EF1067 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 48 20 67 67 91 100.0 1e-17 MYAIKFFHGYLTADGKRTRDKSGCLVYHSEKEAQKLADKIGGRVKKIG >gi|307679301|gb|GL456426.1| GENE 4 2868 - 3506 724 212 aa, chain + ## HITS:1 COG:L1734467 KEGG:ns NR:ns ## COG: L1734467 COG0110 # Protein_GI_number: 15673662 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Lactococcus lactis # 1 195 1 193 203 212 50.0 4e-55 MKQNDFDYMQMLKGELYYAPTILPENKSTKGKVLAQKINQLPIDNVKEIVALEKELLGKT GNELYITPPLHVDYGRHIEVGENFYANMDCIFLDVNKIIFGDNVMVGPRASFYTAGHPID PTIRTAELEFGTPIIVEDNVWIGGSATILPGVTIGKNAIVAAGAVVTKDVPANTIVGGNP AKVIRKIDENDQQFWTEKQRQYQIAKKQFFHE >gi|307679301|gb|GL456426.1| GENE 5 3552 - 3974 482 140 aa, chain - ## HITS:1 COG:lin1207 KEGG:ns NR:ns ## COG: lin1207 COG2764 # Protein_GI_number: 16800276 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 2 135 3 133 135 142 50.0 2e-34 MLELYINFKGEAKEAIAFYEDVFDTKCQNLMTFGEAPEDPEHPINDEIKDLVMNASIIIE GTYVMISDVPDMFGFEVTEGNNLSLVVSTDDDEKIDRLFKRLSEGGTVTMPLSETFWSKK YGSLKDQFGIHWMFNYYEED >gi|307679301|gb|GL456426.1| GENE 6 4050 - 4529 463 159 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 [Streptococcus pneumoniae R6] # 6 157 3 154 165 182 59 1e-45 MTEQTRENKKAAYELCLQQLSGLLEIETDAIANLANSSALLAQTLPDTVFAGYYLYKDEE LVLGPFQGKVSCTRIKMGKGVCGESAEKQATLIVDNVKTHANYISCDSAAMSEIVVPMVK NHQLVGVLDIDSGVTNSYDAVDQLYLEKFVTLLLEKSDF >gi|307679301|gb|GL456426.1| GENE 7 4764 - 5981 1376 405 aa, chain - ## HITS:1 COG:yahJ KEGG:ns NR:ns ## COG: yahJ COG0402 # Protein_GI_number: 16128309 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Escherichia coli K12 # 7 405 55 454 460 230 34.0 3e-60 MTASIVYLNNVRLETGFAKDHHELTYTKTARYTLAIQEGKIQAIIPQNQVTEKQQGTDLK GQLAIPAFQESHNHLDKTYLSLGWRASQPVKNLKERLADEASELKLLAPSTEQRATAMIE KLIGYGASYIRTHVNIDPYVELENFWGVKRALEKYAHVIDYDIVVFPQHGLLKNPHTVLL MREALKNGGTMVGGLDPAGIDYAIEESLETIFDLAEEFQVGIDIHLHDTGEVGVYTIDKF LDILEERKFTQRTAISHAFALLDVRPAEKEKLYQRLATHQTAIMSTIPYDPRYLLPPIDV LRQAGVSVHLGSDGFFDSWSSNVSGDLFEKLRNFCEMTGKITEEQLTQAYVHGCGKEAPF SFEEERLWFTEGDEANFIFTEAASTAEVIARKPQKRKIMLKGQWV >gi|307679301|gb|GL456426.1| GENE 8 5978 - 7201 1170 407 aa, chain - ## HITS:1 COG:yahJ KEGG:ns NR:ns ## COG: yahJ COG0402 # Protein_GI_number: 16128309 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Escherichia coli K12 # 3 398 56 454 460 289 39.0 6e-78 MLLKNCKLETGFSTVNQRIVATETASYDIRIENEVCTAVAPQLRPLENETVIDVNQQLVL PALREMHIHIDKTYFGGPWKACRPLTKGILTRIEEETWLLPEQLPTSLERACQVIEQYIQ QGHYHIRSHCNVDPSIGTKHIEITKEAFSRYEQYITHEIVAFPQHGLLRSQVEPLMREAL RMGATHVGGVDPALVDRHVDHSIAKIFELATTFNKKIDVHLHARDTLGLYEFNKFVDYTE QAKMFGEVTLSHALALGGLEEAAIRDIAQKFIETGIDLTSTVPIGMPTMPIPTLVEQGVK ISVAHDSLTDHWSPFGSGNTIEKLNTAAQRFKISDEYRLNRLWGLASNFVTPLDPNGQRV WPNVGDSADFLLFNAESTAHVIARQQPIQQLILKGQLVEAVQKGEKE >gi|307679301|gb|GL456426.1| GENE 9 7225 - 8889 1748 554 aa, chain - ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 18 553 22 558 559 400 39.0 1e-111 MKKLKMLGCVGLLLALTACQAGTGNSADSNKAAEQKIAISSEAAISTMEPHTAGDTTSTL VMNQVYEGLYVLGKEDELELGVAAEEPAISEDETVYTFKIREDAKWSNDDPVTANDFVYA WQQVASPKSGSIHQALFFDVIKNAKEIALEGADVNTLGVKSLDDKTLEITLERPTPYLKS LLSFPVLFPQNEKYIKEQGDKYATDAEHLIYNGPFKLKEWDNASSDDWTYEKNDTYWDAE KVKLTEAKVSVIKSPTTAVNLFDSNELDVVNKLSGEFIPGYVDNPAFLSIPQFVTYFLKM NSVRDGKENPALANNNIRKALAQAFDKESFVKEVLQDQSTATDQVIPPGQTIAPDGTDFT KLAAKKNNYLTYDTAKAKEFWEKGKKEIGLDKIKLEFLTDDTDSAKKAAEFFQFQLEENL DGLEVNVTQVPFTIRVDRDQTRDYDLELSGWGTDYRDPLTVMRIFTSDSTLGGVTFKSDT YDQLIQETRTTHAADQEARLNDFAQAQDILVNQETVLAPIYNRSISVLANQKIKDLYWHS FGPTYSLNGLMLTN >gi|307679301|gb|GL456426.1| GENE 10 9270 - 10940 1662 556 aa, chain + ## HITS:1 COG:BS_yunI KEGG:ns NR:ns ## COG: BS_yunI COG2508 # Protein_GI_number: 16080295 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Bacillus subtilis # 2 552 1 528 531 149 22.0 1e-35 MMTVNDLLHAEELPGLTLLTHETNLDAPILQANILENPDAFDWLTPGEILLTTGYIFKDQ PCLQKRLIQELANMNCAALGFKVQRYFNEVPQEMIQLANDVGLPILSIPYNYNFSQIISL VNRRVNQPDETISQHSVHMHNKFYTIIKAGGKCTQLLEVLSAAIQAPVMLLDERFQIMNH FDLPDAPTRITSILNNATLKKQFETALKAQNNELLLFYKEPLTVEFSLANHQLSLRILPI KKKNLSLSYLVIWQTTKKLQTIDLLSVEVCAHYLLPQLQLESSENLTTRQKIGALFQDLI QEKNTNPQAWQEFSNYLQLNEKDTFSLLLVAIEQLEQLFNPTIQMNSIGHQLNHILEGYR QKITAFPTQTGFILLLENPAQEEATYLAQTTHLAKNLLEQLMKLNPKLSFKLAIGPTVKK ITNLCDSYKLAQETFHLAQASQELQQRTILNYDDLFFYRLMIETLTKQAKQKIYQRLIEP LEKEDQKHESSLLETINTYFQSNKNISLTATNMYVHRNTIIYRLKKIEEILHLTLEFPDS SLQLSLAVYLYKQKLL >gi|307679301|gb|GL456426.1| GENE 11 10995 - 11420 650 141 aa, chain - ## HITS:1 COG:L103195 KEGG:ns NR:ns ## COG: L103195 COG0589 # Protein_GI_number: 15674218 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Lactococcus lactis # 2 141 4 144 145 64 26.0 5e-11 MKFSKIMVGVEESPDALKAFHYAIQKAKEEQAELVIVSILEEKEINVYQSLDKNYWQEQL AKLEKQTEKYQQEALANGIDKVSVIVNEGNPGELIINKLIPLNKPDLLIIGSKSTSKLKS FFGSQAAYMARYAPISVMIIR >gi|307679301|gb|GL456426.1| GENE 12 11420 - 13018 1515 532 aa, chain - ## HITS:1 COG:L91569 KEGG:ns NR:ns ## COG: L91569 COG1914 # Protein_GI_number: 15673064 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Lactococcus lactis # 3 310 2 306 314 447 77.0 1e-125 MKNSEEHEPKQRHHLIEYANGPSLEEINGTIDVPKNMSFWKTLFAYSGPGALVAVGYMDP GNWSTSITGGQNFQYLLMSIILISSLIAMLLQYMAAKLGIVSQMDLAQAIRARTSKTLGI VLWILTELAIMATDIAEVIGGAIALYLLFHIPLGLAVFITVFDVLLLLLLTKIGFRKIEA IVVALIVVIFVIFAYQVALSNPVWGDVIKGLVPSAEAFSTSHAVNGQTPLTGALGIIGAT VMPHNLYLHSSVVQSRKIDRKDKTDIQRALRFSTWDSNIQLTMAFFVNSLLLIMGVAVFK SGSVKDPSFFGLFDALSNPAVMSNSILAHIAGSGILSILFAVALLASGQNSTITGTLTGQ IIMEGFIHMRVPIWLRRMVTRLLSVIPVLICVLMTSGKSTVEEHIAINNLMNNSQVFLAF ALPFSMLPLLMFTDSRVEMGEHFKNSWLIKLLGWVSVIGLIYLNMKGLPDQIEGFFGDNP TASQITLADNIAYVIIALVILLLVWTVVELYKGDKRYAQQLAAMEQQVEEVK >gi|307679301|gb|GL456426.1| GENE 13 13287 - 13799 375 170 aa, chain - ## HITS:1 COG:no KEGG:EF1055 NR:ns ## KEGG: EF1055 # Name: not_defined # Def: tunicamycin resistance protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 170 1 170 170 333 100.0 2e-90 MIIWLNGAFGAGKTTIAHELQQKLPNAIIYDPEIIGSALMELVPEEMKENDFQEYQEWRC WNAHLLKRMSKESGRPIIVPMTLYKNEYEEELIGYLRRAGIDVYHFLLAVEKEEILQRLL KRNDGTFEWGKNKLPEVLEGFRQIQFTEIFRNHSADTTEIVATILNRITE >gi|307679301|gb|GL456426.1| GENE 14 14344 - 16101 1145 585 aa, chain + ## HITS:1 COG:XF0411 KEGG:ns NR:ns ## COG: XF0411 COG4986 # Protein_GI_number: 15837013 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type anion transport system, duplicated permease component # Organism: Xylella fastidiosa 9a5c # 64 583 62 581 584 300 35.0 5e-81 MKAVTASSKKNTLLAKSIGNLTLLIILGIFIFIIVFSWLKMNRPLHTLPSEEFLATPSKT DDFLSPSNLFYFSIRTMFRMIVGMAWSFLFSFVFGILAVKYKTARRVILPLVNFLESVPL LGFLTFTTAWLLGLFPGNVMGAEAVAIFAIFTGQAWNIMLTLYQIMEVIPSDLVNVTDQF KYNAWEKFWRLEFVYSIPGLLWNVIISQTAAWFALVASEQASVAFPKETNLYLPGIGSYI QVALNRADFKSCLWAVFALLINVVILNFLVFQPLVRATYYFKYETDVESTTPPKSIIYHL LKKATLTKYFSKAFVKFSHFWIYDLPKVWYFFKLDYLYRLLAKLRHFFKTLWYVSLTIIG VYCSIKLYHFLPHQDFSMIPRLTLYTTLRVTLAMVVAGIIFTPLAIWVANDNRRLSIVQP IGQILGSIPSNVYTPFIVLIISMGFNKLEWWILPLIMVGCQWYFFFNVIAGYLAIPDDIR DVTKLFKLSKWQWWTKFLIPSILPYLITAIINAAGAAWNADIAAESIQWGKKSIDVTGLG QYIAANDGVKDKSALGTLAMCFVVGLCIAFVWQPLYRAAKQKFHY >gi|307679301|gb|GL456426.1| GENE 15 16160 - 16969 319 269 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 16 227 1 212 245 127 34 6e-29 MISLDLSNKTMENKELLSIKSVYKEFEIEGHSEHLKVLENIDLTVKTNEFLSIIGQSGTG KSTLLRSIAGLLRTTRGEITFEDKIINEPDANIGMVFQHFALFPWLTVEKNISFGLENRK EISREQINKRVSNLIEMIGLTGFEKAYPRELSGGMKQRVGFARALAIEPSLLLLDEPFSA LDIITASQLSNDLLEIWLNNQIATKSIVMITHDVQQAVQLSDRVVLMDANPGRIAKIYSI DIPRNQRSPKTTIDIVEQITEEMVRRIHL >gi|307679301|gb|GL456426.1| GENE 16 17264 - 17515 275 83 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229546265|ref|ZP_04434990.1| ## NR: gi|229546265|ref|ZP_04434990.1| hypothetical protein HMPREF0349_1482 [Enterococcus faecalis TX1322] hypothetical protein HMPREF9509_01022 [Enterococcus faecalis TX0411] hypothetical protein HMPREF0349_1482 [Enterococcus faecalis TX1322] hypothetical protein HMPREF9509_01022 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9496_00977 [Enterococcus faecalis TX4000] # 1 83 1 83 83 145 100.0 1e-33 MTTMLAIIGTVAIITVQVIEYNMTEIHIPTAGTFNDDDAEPPHSSVTLVFIRTILITLSL NFPSHFFEMVFLCIRENNNEKDC >gi|307679301|gb|GL456426.1| GENE 17 17928 - 18200 78 90 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|47092471|ref|ZP_00230261.1| ## NR: gi|47092471|ref|ZP_00230261.1| hypothetical protein LMOh7858_2508 [Listeria monocytogenes str. 4b H7858] hypothetical protein LMOh7858_2508 [Listeria monocytogenes str. 4b H7858] # 1 58 1 60 120 75 75.0 1e-12 MAGAAGIEPTPTVLETVVLPLNYAPKMEESGFEPLNPKERIYSPSRLATSLFLHKWRETE SNCRHTELQSVALPTELPRLKQKLVQIIFK Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:45:22 2011 Seq name: gi|307679300|gb|GL456427.1| Enterococcus faecalis TX0411 genomic scaffold Scfld74, whole genome shotgun sequence Length of sequence - 808 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 27/0.000 - CDS 14 - 232 271 ## COG0732 Restriction endonuclease S subunits 2 1 Op 2 . - CDS 225 - 770 630 ## COG0286 Type I restriction-modification system methyltransferase subunit Predicted protein(s) >gi|307679300|gb|GL456427.1| GENE 1 14 - 232 271 72 aa, chain - ## HITS:1 COG:HP0790 KEGG:ns NR:ns ## COG: HP0790 COG0732 # Protein_GI_number: 15645409 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Helicobacter pylori 26695 # 19 69 245 295 431 63 56.0 7e-11 MSNDTRPEIRFPGFTEDWEERKLGELTESFDGKRVPIDSDLRISGKYPYYGATGIIDYVD DYIFNGGSVAKF >gi|307679300|gb|GL456427.1| GENE 2 225 - 770 630 181 aa, chain - ## HITS:1 COG:lin0522 KEGG:ns NR:ns ## COG: lin0522 COG0286 # Protein_GI_number: 16799597 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Listeria innocua # 1 179 351 529 529 194 51.0 9e-50 MAIVLPHGVLFRGAAEGVIRQKLLEDGSIYAVIGMPANLFFGTSIPTTVIVLKKNRQTRD VLFIDASREFVKGKNQNKLSEENIQKILETYAERKDVEKYAHLATFDEIKENDYNLNIPR YVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKELLEAISSLQTTPENEAWLQGALEVFKH E Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:45:25 2011 Seq name: gi|307679299|gb|GL456428.1| Enterococcus faecalis TX0411 genomic scaffold Scfld75, whole genome shotgun sequence Length of sequence - 9110 bp Number of predicted genes - 12, with homology - 11 Number of transcription units - 8, operones - 3 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 113 - 172 5.0 1 1 Tu 1 . + CDS 198 - 794 632 ## LCK_p400006 RepB-like protein + Term 908 - 964 11.1 2 2 Op 1 23/0.000 - CDS 1090 - 1908 416 ## COG2801 Transposase and inactivated derivatives 3 2 Op 2 . - CDS 1905 - 2462 406 ## COG2963 Transposase and inactivated derivatives 4 3 Tu 1 . - CDS 2845 - 4194 392 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 - Prom 4223 - 4282 2.2 5 4 Op 1 . - CDS 4332 - 4955 486 ## LACR_C36 amidase 6 4 Op 2 . - CDS 4982 - 5146 127 ## gi|256854634|ref|ZP_05559998.1| conserved hypothetical protein 7 4 Op 3 . - CDS 5220 - 5795 550 ## COG1309 Transcriptional regulator - Prom 5872 - 5931 5.5 8 5 Tu 1 . - CDS 6265 - 6387 59 ## - Prom 6611 - 6670 4.7 + Prom 6412 - 6471 5.8 9 6 Op 1 2/0.000 + CDS 6650 - 7084 325 ## COG3464 Transposase and inactivated derivatives 10 6 Op 2 . + CDS 7085 - 7438 118 ## COG3464 Transposase and inactivated derivatives + Term 7571 - 7609 0.3 - Term 7498 - 7535 6.1 11 7 Tu 1 . - CDS 7554 - 7895 269 ## gi|300861390|ref|ZP_07107475.1| conserved hypothetical protein - Prom 7925 - 7984 7.2 + Prom 7894 - 7953 7.8 12 8 Tu 1 . + CDS 8014 - 8955 990 ## COG2267 Lysophospholipase + Term 8998 - 9042 11.7 Predicted protein(s) >gi|307679299|gb|GL456428.1| GENE 1 198 - 794 632 198 aa, chain + ## HITS:1 COG:no KEGG:LCK_p400006 NR:ns ## KEGG: LCK_p400006 # Name: not_defined # Def: RepB-like protein # Organism: L.citreum # Pathway: not_defined # 1 166 1 166 188 140 72.0 3e-32 MSEELKTIKELADELGVSKQAIQYHIKSLTNKNRQTNDKGVTVLSAIEQEFIRGKVDKQT NKNKTNEPTKKRQTDKQKEPNINQYLLIEIEEVKKNRDKQLAVKDKQIENKDIQIAQMQN LLDQQQRLALQDKKLLEEYKAENDSLKALKMPTEDTKENQSQEEVQTLKKQMEALNDKIK GQEQANNQSSKKWYQFWK >gi|307679299|gb|GL456428.1| GENE 2 1090 - 1908 416 272 aa, chain - ## HITS:1 COG:L0470 KEGG:ns NR:ns ## COG: L0470 COG2801 # Protein_GI_number: 15672806 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 272 1 272 272 513 99.0 1e-145 MKVTGFPKATYYYWVNCFERVNKDELIEKEMLKIRQEHANAGYRPMSELLKQRGYHVNHK KVQRLMKKLGLRVTSYWHKSRKYNSYKGKVGTVAKNKLHRRFRTSIPHQKITTDTTEFKY YEDGIQKKCYLNPYIDLFNSEVISYHISKQPSYQSIDIALNQALAVTSDCPYRRTFHSDQ GWGYQMRDYVSKLKSHRIFQSMSRKGNCHDNSVMENFFGLLKQEIYYGHIFSSFEELEQV IVIWIRYYNTKRIKQKLNWMSPIQFRLNYQNN >gi|307679299|gb|GL456428.1| GENE 3 1905 - 2462 406 185 aa, chain - ## HITS:1 COG:L28615 KEGG:ns NR:ns ## COG: L28615 COG2963 # Protein_GI_number: 15672622 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 185 1 185 185 318 98.0 4e-87 MVKYSIELKQRVIQDYLSGKGGSTYLAKLHNVGSSSQVRRWIRNYRAEGLPTAHSKVNKN YSMELKENAVQCYLTTDLTYEAVARKFEITNFTLLASWVNHFKIYGEVPISKKRGRRKKL ESIASSMTQNPNDSQRIKELEQELRYAQIEVAYLKGLRRLEKNALMNKNQDSSTVSVKPS KSKKS >gi|307679299|gb|GL456428.1| GENE 4 2845 - 4194 392 449 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 1 444 1 450 458 155 26 1e-37 MKKIDVKNIVVGFGKGGKTLAKFLAGKGESVVVIEQSPRMYGGTCINIGCIPSKFLIVNG EKGLKFTEAAEKKAMLTGNLNLKNYHMIADEATAEVIDGKAKFVSDHEIEVMDAEGEVIA QLIGERIFINTGATPVLPPIPGLVDSRNVVTSTELMDLKQLPEHLTIIGSGYIGLEFASM FASYGSKVTVLDIFDNFLPRDDEDISKLVRSDLESRGIIFKLGVKIVAITDNSVEIINKE GKKVSILSDKILVATGRKPNTAGLGLENTNIQLGQRGEIVVNDKLETTVQNVWALGDVHG GLQFTYTSLDDFRIVSNNLYGDGKRSLSDRKNVPTSVFITPALSKVGLNEKDAKAAGIDY RLFKLAATAIPKSAVLNQSKGLLKALVDPETDKILGITIYAEESYETINLISLAIEVGLP YTLLRDKIYTHPTMTEALNDLFAAKNEIK >gi|307679299|gb|GL456428.1| GENE 5 4332 - 4955 486 207 aa, chain - ## HITS:1 COG:no KEGG:LACR_C36 NR:ns ## KEGG: LACR_C36 # Name: not_defined # Def: amidase # Organism: L.lactis_SK11 # Pathway: not_defined # 1 207 1 207 207 416 100.0 1e-115 MFNNKNTAFVVTDPQVEFLKPKGAGYGLTKDILRKYHTTENLTELFKHAKAKGYKIFISP HYFYDHDQNWKFGGQGEQMMLNNKMFHREHQYQETVKGSGADFVEELKPYLDENTIITSP HKIFGPESNDLALQLRKNGIDTVILAGMNANLCVDSHLRELVESGFHVHVAADATGAPGQ EAYDAAITNFGFVADRTMSTAKVLEEL >gi|307679299|gb|GL456428.1| GENE 6 4982 - 5146 127 54 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256854634|ref|ZP_05559998.1| ## NR: gi|256854634|ref|ZP_05559998.1| conserved hypothetical protein [Enterococcus faecalis T8] conserved hypothetical protein [Enterococcus faecalis T8] # 1 54 3 56 56 90 100.0 4e-17 MSAVESKEKVKILQADAIRREYPIAIVQKRWQSCQTFIDVLGKGILKQLITELS >gi|307679299|gb|GL456428.1| GENE 7 5220 - 5795 550 191 aa, chain - ## HITS:1 COG:mlr8177 KEGG:ns NR:ns ## COG: mlr8177 COG1309 # Protein_GI_number: 13476759 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Mesorhizobium loti # 5 184 16 198 225 67 24.0 1e-11 MRNTKEKILTATEQLIYKKGYTGTSINDILDETATGKGQFYYYFDSKKEASLAVIDNHVK IWQKHLLNGILSRDESPLANLKEMLDWIYSDHAQKKIYYGCPVGNLVIELSALDEDFRKP LEQLFSDLQKKIAENLSALTGLLVKQNLPAAHAIIAQIQGSLLLLKVTQDLNVLESNFDL LKTSFEKVGEK >gi|307679299|gb|GL456428.1| GENE 8 6265 - 6387 59 40 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEVDFYYLTTLSYLTVVQRLDKYIALYYLNVANCQHLEAP >gi|307679299|gb|GL456428.1| GENE 9 6650 - 7084 325 144 aa, chain + ## HITS:1 COG:SA0369 KEGG:ns NR:ns ## COG: SA0369 COG3464 # Protein_GI_number: 15926085 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 1 120 178 297 439 119 49.0 1e-27 MSFIFMNAVNHEVIDIVENRQQHYLSDYFMRYSLNARLRVKTVTMDMYSPYIGLIKACFP KADIIIDRFHIVQHLNRALNHVRIQTMNSLRYTRPRDYRKLKKQWKLVLKNEADLNFHDF FTHRLYTGMVSEYVMANYLVELSP >gi|307679299|gb|GL456428.1| GENE 10 7085 - 7438 118 117 aa, chain + ## HITS:1 COG:FN0599 KEGG:ns NR:ns ## COG: FN0599 COG3464 # Protein_GI_number: 19703934 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 1 95 323 419 428 74 39.0 4e-14 MRDTYQLVNQLKGALRTRRFSLFESLLQASKKRTYPRKMRTVLQTLEKYINPIQNAFKYT LSNGPIEGVNNKVKNIKRSGYGYRNFYHLRSRVLISFTLTREAITEKPLYFKEDAAH >gi|307679299|gb|GL456428.1| GENE 11 7554 - 7895 269 113 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|300861390|ref|ZP_07107475.1| ## NR: gi|300861390|ref|ZP_07107475.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] # 1 113 5 117 117 173 100.0 5e-42 MEIFLLKLRPNVDMILKRVVMLNEEKNQYKIKMIFISLLTVAVLAGCSETAEETPQTNSP DETTAVTKSTSDTSDSETATEEDLSESEAESPNEKYKELTIQDYFNLEGLFVK >gi|307679299|gb|GL456428.1| GENE 12 8014 - 8955 990 313 aa, chain + ## HITS:1 COG:lin1226 KEGG:ns NR:ns ## COG: lin1226 COG2267 # Protein_GI_number: 16800295 # Func_class: I Lipid transport and metabolism # Function: Lysophospholipase # Organism: Listeria innocua # 21 288 19 284 306 146 34.0 6e-35 MAIHEVEFKSFNEIETVKGWIYTPIREPIGVVQIVHGYGEHSRRYLHMILTLNEAGFVVA ADDHVGHGKTAYDSDNWSNWGDKGYMTMAEDEQKLRELIKEDYGDLPYFMFGHSMGSMIA RLYATKYGEELDGLILCGTSEIFPEMENIVSELKAEIDAGNGEQVDPDYQNRMFEWMTER IENPNTPNDWISKDPDIVADHANDPFNNFTPVPNIQSLYQFAQMIQQILGTEWSEKVPTD IPIYNIAGDEDPVGRYGEGVYAVSNWLLETGHQVKTKLYSGYRHEIHNHREIRDEVVAGI IDFITEHARVKAN Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:45:49 2011 Seq name: gi|307679298|gb|GL456429.1| Enterococcus faecalis TX0411 genomic scaffold Scfld76, whole genome shotgun sequence Length of sequence - 1870 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 11/0.000 - CDS 1 - 1096 1258 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 2 1 Op 2 . - CDS 1110 - 1670 515 ## COG0732 Restriction endonuclease S subunits - Prom 1809 - 1868 5.9 Predicted protein(s) >gi|307679298|gb|GL456429.1| GENE 1 1 - 1096 1258 365 aa, chain - ## HITS:1 COG:SPy1904 KEGG:ns NR:ns ## COG: SPy1904 COG0610 # Protein_GI_number: 15675717 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Streptococcus pyogenes M1 GAS # 6 340 6 329 992 299 46.0 7e-81 MKISHREEAEVEEQLIRVLGEGHNQWTYRPDLKSEEDLWVNLRQKIISNNQAELNDSPLT DKEFETIKTELLLRTKTPFDAAKWLKGENGIARITIEREDPQLGSVSLILYSNQDIGGGI STYEVVHQIAKRGSNIEARDRRFDVTLLINGLPIVQIELKQVTAKDGVYQAFNQIKKYAE EGMFRNNIFSTLQLFVVSNEQTTRYFANALPKDLHPKFLFSWRTKDNEKVENLYEFCKQV LNIPDAHRLIADYTIVSEDQDNKTLMVLHPYQVHAIQALFIAANKHQSGYVWHATGSGKT LTSFVSTKLLARKSGIDRTIMLVDRKDLDNQTTTEFTKFASEFNTGISSGNAKANSLIVG TGSAK >gi|307679298|gb|GL456429.1| GENE 2 1110 - 1670 515 186 aa, chain - ## HITS:1 COG:L0310 KEGG:ns NR:ns ## COG: L0310 COG0732 # Protein_GI_number: 15672634 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Lactococcus lactis # 1 186 211 407 407 110 37.0 1e-24 MFPKNGAKVPEIRFPGFTGDWEQCKLGDIAKMYQPPTISGSELLDTGYPVFGANGYIGFY SKSNHLEDQVTISARGEGTGTPSYVKAPVWITGNSMVINVEDFDINKKFLYAMLLSYSLK KYITGGAQPQLTRDVLLKVPIIIPSYNEQFKIGTFFKQLDDTIALQQRKLDLLKETKKGF LQKMFV Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:45:57 2011 Seq name: gi|307679297|gb|GL456430.1| Enterococcus faecalis TX0411 genomic scaffold Scfld82, whole genome shotgun sequence Length of sequence - 24406 bp Number of predicted genes - 23, with homology - 23 Number of transcription units - 9, operones - 6 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 123 - 196 86.8 # Pro TGG 0 0 - Term 195 - 227 4.2 1 1 Tu 1 . - CDS 242 - 1090 812 ## COG1737 Transcriptional regulators - Prom 1120 - 1179 6.8 + Prom 969 - 1028 6.5 2 2 Op 1 . + CDS 1245 - 1937 776 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 3 2 Op 2 . + CDS 1897 - 2250 273 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 4 2 Op 3 . + CDS 2270 - 3457 1201 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases + Term 3615 - 3665 0.5 + Prom 3665 - 3724 7.4 5 3 Op 1 3/0.000 + CDS 3762 - 4229 358 ## PROTEIN SUPPORTED gi|163764774|ref|ZP_02171828.1| ribosomal protein L14 6 3 Op 2 . + CDS 4232 - 6727 2483 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 6737 - 6792 15.7 + Prom 6761 - 6820 4.0 7 4 Tu 1 . + CDS 6861 - 7895 833 ## COG1289 Predicted membrane protein + Term 7931 - 7979 6.2 + Prom 7973 - 8032 3.3 8 5 Op 1 13/0.000 + CDS 8075 - 8995 1192 ## COG0826 Collagenase and related proteases 9 5 Op 2 . + CDS 9023 - 10270 1610 ## COG0826 Collagenase and related proteases 10 5 Op 3 1/0.333 + CDS 10294 - 11856 1457 ## COG2508 Regulator of polyketide synthase expression + Term 11920 - 11955 1.1 + Prom 12422 - 12481 11.1 11 6 Op 1 2/0.000 + CDS 12503 - 13771 1536 ## COG1457 Purine-cytosine permease and related proteins 12 6 Op 2 5/0.000 + CDS 13791 - 14885 1356 ## COG3535 Uncharacterized conserved protein 13 6 Op 3 . + CDS 14886 - 16439 1974 ## COG0145 N-methylhydantoinase A/acetone carboxylase, beta subunit + Term 16525 - 16565 -0.9 + Prom 16601 - 16660 8.8 14 7 Op 1 . + CDS 16702 - 17367 797 ## EF3273 hypothetical protein 15 7 Op 2 . + CDS 17345 - 18484 926 ## COG2856 Predicted Zn peptidase 16 7 Op 3 . + CDS 18507 - 18905 523 ## EF3271 hypothetical protein 17 7 Op 4 . + CDS 18992 - 20341 466 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 + Term 20364 - 20397 5.4 - Term 20343 - 20393 11.1 18 8 Tu 1 . - CDS 20456 - 21229 588 ## COG1396 Predicted transcriptional regulators - Prom 21317 - 21376 4.6 + Prom 21316 - 21375 4.6 19 9 Op 1 17/0.000 + CDS 21407 - 21769 461 ## COG1539 Dihydroneopterin aldolase 20 9 Op 2 2/0.000 + CDS 21770 - 22255 516 ## COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase 21 9 Op 3 . + CDS 22258 - 22818 709 ## COG0302 GTP cyclohydrolase I 22 9 Op 4 . + CDS 22822 - 23415 212 ## PROTEIN SUPPORTED gi|162456259|ref|YP_001618626.1| putative ribosomal protein 23 9 Op 5 . + CDS 23408 - 24199 978 ## COG0294 Dihydropteroate synthase and related enzymes + Term 24211 - 24275 22.3 Predicted protein(s) >gi|307679297|gb|GL456430.1| GENE 1 242 - 1090 812 282 aa, chain - ## HITS:1 COG:BS_ybbH KEGG:ns NR:ns ## COG: BS_ybbH COG1737 # Protein_GI_number: 16077237 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 10 257 13 255 283 96 28.0 5e-20 MNLIECLEQKERYTYNEGLIIDFILSHTERVLHMSIYELAEATNSSTSTIVRLCKKTETS GFKEFKIRLSRDLEIHYQAIRNVDANMPFLAQDSDLLIAKKIAQLTTETVQSTQQLLTEA MLNKSIDLLLTAENILAVGVSNSYIRLTDFQTKLLRIQLFIHLIPYQAEQFYLAINATKN DVAILVSYSGNTAEIVNEARIFAEGGTPIIAITSDLNSQLAKYATVILPIPNVEHADFKV STFSSQLAIEYILNVLYSCIFSRNFDKNYTSQKNTPTSILKF >gi|307679297|gb|GL456430.1| GENE 2 1245 - 1937 776 230 aa, chain + ## HITS:1 COG:BS_ywbA KEGG:ns NR:ns ## COG: BS_ywbA COG1455 # Protein_GI_number: 16080890 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Bacillus subtilis # 1 197 1 202 444 140 38.0 2e-33 MDKLTNWVEQAVVPKVSRITSLRYFQALRNGFFAIMPLTIIGSIFMLITDFPVAGYGDFM AGIFGAGWADMISPAYRATFNMMGIIFAGTMSYKLAESYEMDRLTSLILGIVAYVVVLPK TVTTESGEVVTKVLSFDWLGTQGVITAIIMSILSVELTRFCIKKKLVIKMPDSVPSMVSQ AFSALIPGIFVVAVALLINGIGLSFADSFPQLIYNESHVENFVCSSIFQH >gi|307679297|gb|GL456430.1| GENE 3 1897 - 2250 273 117 aa, chain + ## HITS:1 COG:CAC0386 KEGG:ns NR:ns ## COG: CAC0386 COG1455 # Protein_GI_number: 15893677 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Clostridium acetobutylicum # 1 109 336 444 450 108 44.0 2e-24 MSKISFVPAFFNINEPLIFGLPVIFNPLLLIPIAVAPIVSVLIAFLSMKIGFMPMFTNIQ APWATPFLFSGFLVGKWQGAVTQVLAVAASVVIYYPFVKALDRQYQKEEAHEVPETL >gi|307679297|gb|GL456430.1| GENE 4 2270 - 3457 1201 395 aa, chain + ## HITS:1 COG:mll0856 KEGG:ns NR:ns ## COG: mll0856 COG0626 # Protein_GI_number: 13470999 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Mesorhizobium loti # 24 388 31 393 395 261 38.0 2e-69 MHVENDENICCEVEKGMEKMYHPMVPELVQTSSFYFPTYEEFMAASIDEKNNYVYTRGTN PTTEILEKKIARLERGEKCKVFASGMGAISATLFTLLQQGDHVLMVNTIYGESVSFVQYL EKFGVSLTKVDVAETEELFQFVQENTKVIYFESPSSQKFELLDLEKITALAQKIGAYTVI DNTWASPLFQHPLCHNVDLVIHSCSKYIGGHSDIVAGAVIGKAALVDQIFEHGHQALGAV NSPFNSWLALRGIRTMPVRLAHQSQAIQTVLSALQKDPRISRLYHPFVGNQQQQALAEKY LTGYGSLFAIDLKDTDFERLKTFVNALTLVTIGVSWGGFESLALPVFKGNNLAAVQKRGL SPAHIRMYVGLEEPTSIIEDIQQALDQAYGEETLL >gi|307679297|gb|GL456430.1| GENE 5 3762 - 4229 358 155 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764774|ref|ZP_02171828.1| ribosomal protein L14 [Bacillus selenitireducens MLS10] # 4 154 2 154 158 142 47 2e-33 MSNQNTSDLIEAYLKKILEESNKIEIRRAEMANLFNCVPSQINYVINTRFTIQRGYAVES KRGGGGYIRIVKVQISDNDQLLKQMDQLIGATLTEKDALTFIQTLYEEEVITKKEGNLML AALSKSTLNGLGNHEDFLRAQIMRSFLERLSYEEE >gi|307679297|gb|GL456430.1| GENE 6 4232 - 6727 2483 831 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens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gi|307679297|gb|GL456430.1| GENE 7 6861 - 7895 833 344 aa, chain + ## HITS:1 COG:Cj0557c KEGG:ns NR:ns ## COG: Cj0557c COG1289 # Protein_GI_number: 15791918 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Campylobacter jejuni # 20 328 29 337 361 98 27.0 2e-20 MEQSFFRELLHYQRPKDNPFRLVFAGLVMFSILFLGYINHQLLISSFGSLGIFTFLYYQP LPLKQLMTRLSVVGSYLFLGNLLGMLSTHIAWLIPIVVALVGFGGRFFFEVYDISKPGAF FGVMVTAMGASTSIPLAKIPFMSGCMLLGIGFSILFALVLHFTEKEISAPLAKRSLRERI YRHPEAPLDSIYYSFVLFFAVYISESLHLQNPYWLVVSCASILQGDNLRAIKQRNIQRIF GTTIGLVISAFLLNLALTTFESIVVITILFVTVEYFIRRNYGLAQFFTTPMALMLSLLVR QQYVITLIQFRFLGIVLGSLLGLAAAWLFTVVVTFYERKYHLNE >gi|307679297|gb|GL456430.1| GENE 8 8075 - 8995 1192 306 aa, chain + ## HITS:1 COG:L54059 KEGG:ns NR:ns ## COG: L54059 COG0826 # Protein_GI_number: 15673973 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Lactococcus lactis # 1 306 1 307 307 357 56.0 2e-98 MIELIATAESVEQAVELLATGVDTLYIGEEIFGLRLPVSFTRDEQREIVKRAHEMGKQVL VAVNGIMHPEKMKLVPEYLTFLKEINVDKITLGDPGIVFIMQRDGLEIPYVYDGETLVTS SRQINFWSKRGAIGAVLAREVPFEEMVAMEENLAVPAEILVYGATCIHQSKRPLIQNYYN YTKNDKGVTKDEGLFISEPKKPETHYSIYEDSHGTHIFANNDVNLMNELTNLYDHHYRTW KLDGLYTPGENFVAIARLFAEAKAALEAGTWSEDQAAHATAEIEKLHPTGRGLDNGFFDL SADAIK >gi|307679297|gb|GL456430.1| GENE 9 9023 - 10270 1610 415 aa, chain + ## HITS:1 COG:SP1429 KEGG:ns NR:ns ## COG: SP1429 COG0826 # Protein_GI_number: 15901282 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Streptococcus pneumoniae TIGR4 # 7 415 3 410 428 631 74.0 0 MKVMTERTLKRPEVLAPAGTLEKLKVAIRYGADAVYIGGNAYGLRSRAGNFTPEEMAEGV AFAREHNAKVYVAANMVTHEGNQEGAGAFFRELRDIGISAVIVSDPALIEICATEAPGLP IHLSTQASATNYETLEFWKNEGLERVVLAREVSMEEVAAIRENTDIEIEAFIHGAMCISY SGRCTLSNHMSMRDANRGGCSQSCRWKYELFDMPFGTERRSKTSEGEVEEEFSMSAVDMS MIEHIPELIENGVDSFKIEGRMKSIHYVSTVANVYKKAVDSYMEDPENYVCQQEWIDELW KVAQRELATGFYYNTPSENEQLFGERRKIPQYKFVGEVIAYNEKTQVATIRQRNLFSVGD EIEFYGPGFTHFHQTVKEMYNEDGEAIDRAPNPMMLLTMEVTQPVAVGDMIRKKK >gi|307679297|gb|GL456430.1| GENE 10 10294 - 11856 1457 520 aa, chain + ## HITS:1 COG:lin0472 KEGG:ns NR:ns ## COG: lin0472 COG2508 # Protein_GI_number: 16799548 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Listeria innocua # 1 517 1 524 531 323 35.0 6e-88 MSVRVNDLLKLPSLREATVLSGKNQLDTSVASLSFLEVSDMSLFSEKLHKTNEYHAGEIL IGSFCAIRHDVVKQCETIRHLHELGEVGLILYYVGIIVPKVAEEVIQLADSLGFILIQMP KNDPTLRYNEVIYEVMKLLVNKNKMASFATDLLEKVSLLPEQNRSVEMTLKILSDFLKVN IALTTYTNEIISTINWPRSTKLPLTKLLYQSQEKVALGETTYFITSQKLPQKDGQTLKLY FIREEEQLTSFEMNQAVEVVQMALNLWGKNYDEVSEYALVQAIINDESDKMYQLAKKLMI DISSVETMWLLPIWQQGQEIHAIQQDLKDFLRYYYQTTIVQQTENYLIVLLGNYLHKQPE ATISKEYLQATDYQDYLGEIILCPKVRNTTEVRVSYQTANQVAPFLKRVYPQRKVLSIAE IRTVQQMMTCLQAGEEAIQQRLAVIQPLLKESEQLMTLGTFLLDASSDFKECGERLFVHK NTVKYRISKINEALGYDMTNAAEAYEVYLAMILYRLVTNE >gi|307679297|gb|GL456430.1| GENE 11 12503 - 13771 1536 422 aa, chain + ## HITS:1 COG:lin0473 KEGG:ns NR:ns ## COG: lin0473 COG1457 # Protein_GI_number: 16799549 # Func_class: F Nucleotide transport and metabolism # Function: Purine-cytosine permease and related proteins # Organism: Listeria innocua # 2 420 4 422 427 508 68.0 1e-144 MKLKNEQQQSWLSLAFVWAGAMISVPGLIIGGTLVAGMPLWEALLTGFIGYGIIVILMIL QGIQSSDLQEPSVKVASQVFGIQGSQKIISIILAIACLGWFGLQANVSGGAFTNFLKIYG IDLPVSLSSLIWGIIMLISALYGIKILKILNYFAVPVLVLVCLYGLVASLRNNGWEAVSQ YTPQTAGSFMSGLSMTVGSFALGAVIAGDYSQYVSSRKDVVKAATLGILPTGLLMIGVGA VLTIASNTADITEVFMNLGFPVLGIIALILATWTTNAVNAFSGGLALINVFDIPKEKEKV AVGAAGAIGTLLAVVGILNYFTPIMSVLSAMVPPVAGVMIAAYWLINKGDRTKWQPTHGV NKLGVFSWLIGAAVGGIPVIMSFFPNAPQLPNQPLIGIVLSFVIYYFGAKRQQTNTESLE ME >gi|307679297|gb|GL456430.1| GENE 12 13791 - 14885 1356 364 aa, chain + ## HITS:1 COG:lin0474 KEGG:ns NR:ns ## COG: lin0474 COG3535 # Protein_GI_number: 16799550 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 364 1 363 366 565 76.0 1e-161 MRYLDAEAIENIATGAAFLGTGGGGDPYIGKMMALSAIEENGPVKLVSPEEIAAEDFFLP AAMMGAPSVAIEKFPKGDEFVRVFEKLGKYLDQETIAGTFPMEAGGVNSMIPIVVAAKLG IPLVDCDGMGRAFPELPMVTFHLNGMSATPMAITDEKGNIGIMETIDNTWTERLARVQTV EMGASALVSIYPATGKQLQDYGIHNIVTLSEEIGKVIRGTYADEQEKRQALVEVTDGFEL FQGKILDVEREVKGGFNLGRVKLSGLNSDAGSEAVVHFQNENLIAEKDGQVIAMTPDLIC MVDLETLTPVTTESLKYGKRVQVMGLKANAAWRTKKGIETVGPRYFGYEMDYQPLENLVA KEDK >gi|307679297|gb|GL456430.1| GENE 13 14886 - 16439 1974 517 aa, chain + ## HITS:1 COG:lin0475 KEGG:ns NR:ns ## COG: lin0475 COG0145 # Protein_GI_number: 16799551 # Func_class: E Amino acid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: N-methylhydantoinase A/acetone carboxylase, beta subunit # Organism: Listeria innocua # 1 516 1 515 516 731 74.0 0 MYKIGIDVGGTNTDAVILDHQLNLIHSVKVPTTDDIQTGIASALNKVLAESAVDPTKVTH AMLGTTQCTNAIVERKKLAKVGVLRLGYPATASVLPYTAWPKDLVATLSETYALAHGGYE YDGQPLTALDEEELRGILASWRGEVEAIAVIGVFSSLKNDQELFVQALAKEVLGADVPVS CSSMIGSVGLIERENATILNAALHKVIKVTSEGFEQALEQEKIHHAQVYLCQNDGTLMSL TYAKQFPILTIACGPTNSIRGASYLAGLKDAVVLDVGGTTSDIGVLVDGFPRESSLAVDV GGVRTNFRMPDIVSIGVGGGSLVREQPDGSVTVGPDSVGYRITQEALVFGGTQLTTTDIA VRLGHAQVGDPSKVAHLDQAFAEKVYQKIGELVSEAIDRMKTSSADVTVVLVGGGSIIIP EELTGVKALIRNENGAVANAIGASIAQISGQYEQIYVYSKIQRDAALTDAQEKAVQQAEL AGAVPGTIELVEVEETPLAYHPENATRLRVKVVGNMY >gi|307679297|gb|GL456430.1| GENE 14 16702 - 17367 797 221 aa, chain + ## HITS:1 COG:no KEGG:EF3273 NR:ns ## KEGG: EF3273 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 65 221 1 157 157 318 99.0 8e-86 MSILKEHLKRNCDARMVGVLSLSIREAYRYLMELTERESIFQRAEMKKVWGHVRHGLVDV GLKQVLTSSAIPHEIADKASSRYVNGHTYLMIETKGAILTPAKVLSEASVPKKALFRNRG SLLNKQYNLFDKPEDLNEYYDANQPPFLLLTYGGSNHQLRFVRLGLPDIGVGRWIDQIDI TQAPVLLKNPEEVRKDLHLTFTSTADELIRRGLENEREVDF >gi|307679297|gb|GL456430.1| GENE 15 17345 - 18484 926 379 aa, chain + ## HITS:1 COG:MT2073_2 KEGG:ns NR:ns ## COG: MT2073_2 COG2856 # Protein_GI_number: 15841500 # Func_class: E Amino acid transport and metabolism # Function: Predicted Zn peptidase # Organism: Mycobacterium tuberculosis CDC1551 # 139 323 65 237 279 102 30.0 2e-21 MNERLIFNPKQLTSARIARGLTMKELAEKAELSRQMISNYESGKTIPKADSILKLISVLQ FPRSFFSADTFELYSGATFFRSRSAATKKVRDMQKERLKYVQEVYKVLATYVNFPKVCLP ELIEKSIYEITEEEIVKKAEELRKIWGLDLISPVPNLIQLAEQNGVIISEANMSNPTLDA VSRWMIGRPFIMLTDNHESAVRRRFNVAHELGHILLHNGVESIHEYSQTELKNIIEYQAN LFAAHFLLPSAAFSDSLLSISLEYYIDLKKYWKVSLQSMIQKTYTLALINDDQRLYLNKR IAKNKWKTKEPYDEQLTIEQPEVFQKVYHMILEHQVIPASQLNQAFKLPKEEIEKILGTA IQTEQDKTEIVLELLRSNK >gi|307679297|gb|GL456430.1| GENE 16 18507 - 18905 523 132 aa, chain + ## HITS:1 COG:no KEGG:EF3271 NR:ns ## KEGG: EF3271 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 132 1 132 132 258 96.0 4e-68 MAKLFAYQIGQNPRIQTDLLVDPQLFEDEHGCAGGVDFGLADCVQTGMFTDIEVIKRYLH EATYVFINGDFDRLSYLEIGIALSLGKTLYVITMNPNVTKEDLGISFDNATIEFLSPSAF TERIHETEAAEN >gi|307679297|gb|GL456430.1| GENE 17 18992 - 20341 466 449 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 1 443 1 442 458 184 29 6e-46 MKTYDYIVIGGGSGGIASANRAGMHGANVLLIEGNEIGGTCVNVGCVPKKVMWQASSMME MMERDTASYGFDVEIKNFSFKQLVENREKYIDFLHGAYNRGLDSNNIERIHGYATFTGEQ TIEVNGTEYTAPHILIATGGRPKKLGIPGEEYALDSNGFFALEEMPKRVVFVGAGYIAAE LAGTLHGLGAETHWAFRHERPLRSFDDMLSEKVVERYQEMGMQIHPNATPAKIEKTAQNE YVITFENGESITTDAVIFGTGRQPNTDQLGLENTKVALDEKGYVKVDKFQNTTQNGIYAV GDVIGKIDLTPVAIAAGRRLSERLFNGQTDLYLDYNLVPTVVFTHPPVATIGLTEKAALE EYGEDQVKIYRSSFTPMYFALGEYRQKCDMKLICVGKEEKIVGLHGIGIGVDEMLQGFAV AIKMGATKADFDNTVAIHPTGSEEFVTMR >gi|307679297|gb|GL456430.1| GENE 18 20456 - 21229 588 257 aa, chain - ## HITS:1 COG:L12334 KEGG:ns NR:ns ## COG: L12334 COG1396 # Protein_GI_number: 15671989 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 1 64 1 64 107 65 40.0 1e-10 MLIQTILKTRRINNHYTQEQIAQKLHVTTQAVSKWETGQSIPSIDNLLMLSDLYNVSIDE LIQGSPYFKKPQVVGKIYNLKKGILFCIIWTCFSLLLTGFGYQPFWLFSAIIFIGLLLVF PIIFSDYWIINQQDIMVHQFSRNPILKIIECIKNSSTQIKIPYSEIESIEIIYTKKIRAS AFDSSPDYFYLLVTYNNQTTKLYLDIYAKRFLPQFIAFLSRQRITIIDKSEIIELLVSDT SLYQHFNEKNVATDNRK >gi|307679297|gb|GL456430.1| GENE 19 21407 - 21769 461 120 aa, chain + ## HITS:1 COG:lin0257 KEGG:ns NR:ns ## COG: lin0257 COG1539 # Protein_GI_number: 16799334 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroneopterin aldolase # Organism: Listeria innocua # 1 119 1 118 124 85 39.0 2e-17 MDKIRINNLKFFTKNGVLAEEKRLGQQVEIDLEMQLSLAEAGRTDDVTQTVNYAEVNELI AQRVNNHSYDLIEGLASAILDDISADYQEQLNKIIIKIRKYSVPMPGLFDNIEIEMEREV >gi|307679297|gb|GL456430.1| GENE 20 21770 - 22255 516 161 aa, chain + ## HITS:1 COG:SMc00465 KEGG:ns NR:ns ## COG: SMc00465 COG0801 # Protein_GI_number: 15965562 # Func_class: H Coenzyme transport and metabolism # Function: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase # Organism: Sinorhizobium meliloti # 5 148 12 155 174 122 42.0 3e-28 MIGYVALGSNVGDPYANLVKARNYLNEDTQIQVVASSKLYETDPYGYTDQDDFLNAVLKI DTSYTAEELLAVTQGIEQAMKRKKLIHWGPRIIDIDILLLGGQSVALPHLQVPHQELTKR SFVLIPLSDVYAEEQLLGAPIATWIQRSGNQEEVRVSEKEW >gi|307679297|gb|GL456430.1| GENE 21 22258 - 22818 709 186 aa, chain + ## HITS:1 COG:BS_mtrA KEGG:ns NR:ns ## COG: BS_mtrA COG0302 # Protein_GI_number: 16079335 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase I # Organism: Bacillus subtilis # 1 174 1 174 190 203 60.0 1e-52 MEQEKQAQIEQAVTTILEAVGEDTQRAGLIDTPKRVAKMYAEVFSGLTEPEFDDYKLFDS LNEGEMVLVKDIAFYSMCEHHLLPFYGKVHVAYLPEGGKVLGLSKLPRLVEHCAKRPTVQ EDLTVTIARKLQENIPVKGIAVAIEAEHMCMTMRGVKTPQSSTKTFQFTGLFKEQEWKNQ FLMEIR >gi|307679297|gb|GL456430.1| GENE 22 22822 - 23415 212 197 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|162456259|ref|YP_001618626.1| putative ribosomal protein [Sorangium cellulosum 'So ce 56'] # 1 186 6 196 207 86 29 2e-16 MEIIVGTNNQGKLKEMQSGLKDPAIQLVSYRKYTTSQEQPAETGTTYAENAYLKARFFQQ LIGRPVLGDDGGLTLTAFPDLLGIHTSRFFHSANPEEQNRELLHLFEGQQSTRELTLSAT LVYVLDDDKLLQTEATLTGELVEPRGTGGYGFDPIIYLPDRGKTLAELSTSERMKISPRM RALRKMIQQIKEQCDND >gi|307679297|gb|GL456430.1| GENE 23 23408 - 24199 978 263 aa, chain + ## HITS:1 COG:slr2026 KEGG:ns NR:ns ## COG: slr2026 COG0294 # Protein_GI_number: 16329867 # Func_class: H Coenzyme transport and metabolism # Function: Dihydropteroate synthase and related enzymes # Organism: Synechocystis # 1 259 21 287 289 198 41.0 1e-50 MIDLKKNYQIMGIVNTTPDSFSDGGSYTTVDVAYQHALHLLEAGADILDIGGQSTRPGYE EVSPQVEADRVLPLIKKIRETSLAPISVDTYYPEVAEAAIQAGATMINDIKGLDTPGMAE VLAQYPEVQVVIMHSRKRQSLSLKEELHQFYTEKIEQCQKYGLSLEKICFDPGIGFHKTV AENLQLLKDPNAFRYQDYPLLYGVSRKRTIGALTNEPEPANRDFGSAAASLYAAQQGVEI LRVHNVQGLKQTFDVWRALSEKE Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:46:06 2011 Seq name: gi|307679296|gb|GL456431.1| Enterococcus faecalis TX0411 genomic scaffold Scfld83, whole genome shotgun sequence Length of sequence - 591 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 66 - 584 414 ## llmg_0815 hypothetical protein Predicted protein(s) >gi|307679296|gb|GL456431.1| GENE 1 66 - 584 414 172 aa, chain - ## HITS:1 COG:no KEGG:llmg_0815 NR:ns ## KEGG: llmg_0815 # Name: ps324 # Def: hypothetical protein # Organism: L.lactis_MG1363 # Pathway: not_defined # 47 171 49 180 182 90 43.0 2e-17 MNKQELIEELECIEVSTDSLDYLRGADYANERAISLAKQLDEPKKVVVPKFVAEWIELCK GLECTLYCSATSKLRDTMHIEKAKEVSDWLDTFENHELFAHAWLDGYEVEKGPLYHVLLP DKGATNTGYTFLNLAGAIDFTTCKEKVDMLTEQEIKAVDERYWPFAVKVDGE Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:46:12 2011 Seq name: gi|307679295|gb|GL456432.1| Enterococcus faecalis TX0411 genomic scaffold Scfld93, whole genome shotgun sequence Length of sequence - 7906 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 3, operones - 3 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 2131 - 2163 1.1 2 1 Op 2 6/0.000 - CDS 2292 - 3665 1705 ## COG0770 UDP-N-acetylmuramyl pentapeptide synthase 3 1 Op 3 . - CDS 3744 - 4814 1265 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes - Prom 4872 - 4931 7.0 4 2 Op 1 . - CDS 4955 - 5401 586 ## COG1671 Uncharacterized protein conserved in bacteria 5 2 Op 2 . - CDS 5398 - 6426 1052 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit - Prom 6452 - 6511 6.9 - Term 6455 - 6518 18.2 6 3 Op 1 . - CDS 6520 - 7530 996 ## COG0524 Sugar kinases, ribokinase family 7 3 Op 2 . - CDS 7540 - 7905 444 ## EF0839 hypothetical protein Predicted protein(s) >gi|307679295|gb|GL456432.1| GENE 1 442 - 1989 2180 515 aa, chain - ## HITS:1 COG:lin0859 KEGG:ns NR:ns ## COG: lin0859 COG0513 # Protein_GI_number: 16799933 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Listeria innocua # 2 440 3 440 516 592 69.0 1e-169 MKFKELGLAPELLSAVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML NKIDADNRVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLKDRP HIVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQTLLF SATMPPAIKNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLDVQTPE LTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAA RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYLHVIENLTKK RMTPLRPPTEKEAFKGQLSAAVETIESDLEENGLDKYLESAEALLEKYSATDLAALLLKT VAKDPADAVPVKITPERPLPSNKKGFNKNGRGGGGGNNRNRNRGGNGKGGSYRGNKNHKD GDRNYKNSDRKNKDQRGGKRHNDKKRGFVIRENAK >gi|307679295|gb|GL456432.1| GENE 2 2292 - 3665 1705 457 aa, chain - ## HITS:1 COG:SPy1420 KEGG:ns NR:ns ## COG: SPy1420 COG0770 # Protein_GI_number: 15675337 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide synthase # Organism: Streptococcus pyogenes M1 GAS # 1 455 1 453 463 426 49.0 1e-119 MKLTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGENDGHRFIESAMA NGCQAAFWGQDLVDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKVTQQVI TFGFSQESQLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNALIAIGIGRYFQLTD SEIQKGLATAELTKNRTEWLKAANGAEILSDVYNANPTAMGLVLDSFSKMSKVGKRIAVL GDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAPANIHSFKKEEK NELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK >gi|307679295|gb|GL456432.1| GENE 3 3744 - 4814 1265 356 aa, chain - ## HITS:1 COG:SP1671 KEGG:ns NR:ns ## COG: SP1671 COG1181 # Protein_GI_number: 15901506 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Streptococcus pneumoniae TIGR4 # 3 351 5 343 347 387 55.0 1e-107 MKIILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKE VLHLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVG AGVLASANAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKP ANMGSSVGISKAENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGE VVKDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS KNELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLALNRFKQRQEFYNN >gi|307679295|gb|GL456432.1| GENE 4 4955 - 5401 586 148 aa, chain - ## HITS:1 COG:SA0636 KEGG:ns NR:ns ## COG: SA0636 COG1671 # Protein_GI_number: 15926358 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 3 146 4 147 152 140 47.0 8e-34 MKIFVDGDGSPVKETVIEVAVEKALDVVIVTSVDHYSLKDYPENVSFVYVDKGADAADFK IVQLIKKGDFLITQDYGLASLVLPKGVSVLHQLGYQYTKENIDGLLEQRYFSGQIRRKGG RTKGPKPFTDKDRTTFKQALIELVERSL >gi|307679295|gb|GL456432.1| GENE 5 5398 - 6426 1052 342 aa, chain - ## HITS:1 COG:aq_1026 KEGG:ns NR:ns ## COG: aq_1026 COG0187 # Protein_GI_number: 15606321 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Aquifex aeolicus # 16 328 23 368 792 85 23.0 2e-16 MSVAHLLTVLENDEFIERIQKRPEAFIGTTGLVGLENLLVQTINGLLEFFIEKNQGKIAI QLSRQQISFQVSSTRPLVFEQKQVDLEPPFLYLSVLQAFSKQVGISIDQEKQRTIFIYHQ GQLKKRLLLPIEETQERIEVLFWPDTQIFGTESLSYMRVLQQCQQIAMLNPGLKILLTQE EEQKNLCYYPKGLSNYLFEKDNPLTRKAAPIIQAKQTELALVQFILSKNHAPQVQKTFVN GHYPSLGGTHYEGFLDGVVAAFNQFLEEQHYSLSVTADSFLAEFDFVLAITIPKPRYTDA TKTILRNTELYEVVKEVVFDELQHYFQRHPKWLEQGRSEGNE >gi|307679295|gb|GL456432.1| GENE 6 6520 - 7530 996 336 aa, chain - ## HITS:1 COG:TM0067 KEGG:ns NR:ns ## COG: TM0067 COG0524 # Protein_GI_number: 15642842 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Thermotoga maritima # 1 323 1 325 339 154 31.0 2e-37 MKIAAFGEVMLRFTPPEYLMLEQTEQLRMNFVGTGVNLLANLAHFQLETALITKLPANRL GEAGKAALRKLGISDQWVGEKGGHIGSFFAEMGYGIRPTQVTYQNRHQSAFGISEAKDYD FEAFLAEVDMVHICGISLSLTEKTRDAALILAQKAHAYQKKVCFDFNYRPSLNTANSALF MRQQYERILPYCDIVFGSRRDLVELLGFIPREDLEGEAQETELIQRFMSQYNLEWFAGTT RSHSQNQNYLSGYLYTQNEYQQSEKRPLLNLDRIGAGDAYAAGILYGYSQNWSLEKAVTF ATVNGVLAHTIQGDIPLTTVKQVNHVLEHPNLDLIR >gi|307679295|gb|GL456432.1| GENE 7 7540 - 7905 444 121 aa, chain - ## HITS:1 COG:no KEGG:EF0839 NR:ns ## KEGG: EF0839 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 121 127 247 247 236 100.0 3e-61 NIATGPLSSGAPAAEVPIETAIKLLKDMGGSSIKYFPMKGLAHKEEYQAVAAACAKYDFY LEPTGGIDLENFEEIVQIAVDAGVKKIIPHVYSSIIDQETGDTRTEDVKTLLTMMKNTLN K Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:46:31 2011 Seq name: gi|307679294|gb|GL456433.1| Enterococcus faecalis TX0411 genomic scaffold Scfld99, whole genome shotgun sequence Length of sequence - 51974 bp Number of predicted genes - 64, with homology - 61 Number of transcription units - 24, operones - 12 average op.length - 4.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 66 - 125 2.5 1 1 Tu 1 . + CDS 152 - 319 210 ## EF2829 hypothetical protein + Term 417 - 452 1.1 + Prom 615 - 674 5.8 2 2 Tu 1 . + CDS 742 - 1209 219 ## EF2828 ArpU family transcriptional regulator + Term 1367 - 1420 1.0 + TRNA 1510 - 1581 61.4 # Trp CCA 0 0 + Prom 1509 - 1568 77.2 3 3 Op 1 . + CDS 1623 - 1718 88 ## 4 3 Op 2 . + CDS 1734 - 2021 411 ## gi|307290789|ref|ZP_07570683.1| conserved domain protein 5 3 Op 3 . + CDS 2098 - 2397 198 ## EF2825 hypothetical protein + Prom 2411 - 2470 2.4 6 4 Op 1 . + CDS 2501 - 2959 387 ## EF2824 hypothetical protein 7 4 Op 2 . + CDS 2956 - 4689 1159 ## COG4626 Phage terminase-like protein, large subunit 8 4 Op 3 . + CDS 4708 - 5877 1192 ## BC2585 portal protein 9 4 Op 4 . + CDS 5909 - 6445 518 ## COG3740 Phage head maturation protease 10 4 Op 5 . + CDS 6445 - 7776 1803 ## EF2820 major capsid protein 11 4 Op 6 . + CDS 7779 - 8066 247 ## EF2819 hypothetical protein 12 4 Op 7 . + CDS 8026 - 8352 357 ## EF2818 minor structural protein, putative 13 4 Op 8 . + CDS 8342 - 8680 341 ## EF2817 hypothetical protein 14 4 Op 9 . + CDS 8670 - 9032 392 ## EF2816 hypothetical protein 15 4 Op 10 . + CDS 9038 - 9676 703 ## EF2815 phi13 family major tail protein 16 4 Op 11 . + CDS 9676 - 10185 309 ## EF2814 hypothetical protein 17 4 Op 12 . + CDS 10196 - 10306 100 ## 18 4 Op 13 2/0.000 + CDS 10322 - 12625 2154 ## COG5280 Phage-related minor tail protein 19 4 Op 14 4/0.000 + CDS 12622 - 13335 630 ## COG4722 Phage-related protein 20 4 Op 15 . + CDS 13332 - 16034 2283 ## COG4926 Phage-related protein 21 4 Op 16 . + CDS 16049 - 16957 825 ## EF2810 hypothetical protein 22 4 Op 17 . + CDS 16950 - 17267 411 ## MPTP_1474 hypothetical protein 23 4 Op 18 . + CDS 17260 - 17577 557 ## gi|227519942|ref|ZP_03949991.1| hypothetical protein HMPREF0348_2925 24 4 Op 19 . + CDS 17577 - 18140 571 ## EF2807 hypothetical protein 25 4 Op 20 . + CDS 18156 - 18530 493 ## EF2806 hypothetical protein 26 4 Op 21 . + CDS 18530 - 18667 158 ## EF2805 hypothetical protein 27 4 Op 22 . + CDS 18703 - 18936 303 ## EF2804 hypothetical protein 28 4 Op 23 . + CDS 18939 - 19142 353 ## EF2803 holin 29 4 Op 24 . + CDS 19147 - 20232 1176 ## COG5263 FOG: Glucan-binding domain (YG repeat) + Term 20293 - 20328 5.8 + Prom 20234 - 20293 4.5 30 5 Op 1 . + CDS 20393 - 20926 203 ## gi|307290814|ref|ZP_07570708.1| hypothetical protein HMPREF9509_01112 31 5 Op 2 . + CDS 20943 - 21326 242 ## gi|307290815|ref|ZP_07570709.1| conserved domain protein + Term 21359 - 21400 7.5 + TRNA 21394 - 21467 91.1 # Met CAT 0 0 + Prom 21394 - 21453 76.7 32 6 Op 1 . + CDS 21587 - 22072 302 ## EF_C0016 hypothetical protein + Term 22081 - 22133 11.0 + Prom 22091 - 22150 3.8 33 6 Op 2 . + CDS 22216 - 22302 87 ## + Prom 22330 - 22389 7.8 34 7 Tu 1 . + CDS 22456 - 22656 335 ## COG1278 Cold shock proteins + Term 22675 - 22708 3.1 - Term 22701 - 22748 11.4 35 8 Op 1 7/0.000 - CDS 22762 - 24447 1874 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 36 8 Op 2 . - CDS 24449 - 24661 246 ## COG5503 Uncharacterized conserved small protein - Prom 24705 - 24764 7.4 - Term 24758 - 24794 -0.4 37 9 Tu 1 . - CDS 24967 - 25353 334 ## COG2832 Uncharacterized protein conserved in bacteria 38 10 Op 1 35/0.000 + CDS 25582 - 27309 243 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 39 10 Op 2 . + CDS 27306 - 29075 186 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 + Term 29118 - 29171 9.9 + Prom 29233 - 29292 3.0 40 11 Op 1 . + CDS 29318 - 29809 471 ## COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily 41 11 Op 2 . + CDS 29826 - 30974 1351 ## COG0381 UDP-N-acetylglucosamine 2-epimerase + Term 30983 - 31028 2.5 + Prom 30976 - 31035 2.2 42 12 Tu 1 . + CDS 31073 - 31726 654 ## COG0546 Predicted phosphatases + Prom 31841 - 31900 11.0 43 13 Op 1 3/0.000 + CDS 31934 - 33319 1465 ## COG1559 Predicted periplasmic solute-binding protein + Term 33337 - 33382 9.8 + Prom 33429 - 33488 15.3 44 13 Op 2 . + CDS 33580 - 34059 783 ## COG0782 Transcription elongation factor + Term 34071 - 34108 2.0 + Prom 34131 - 34190 8.4 45 14 Op 1 7/0.000 + CDS 34210 - 34941 702 ## COG4758 Predicted membrane protein 46 14 Op 2 19/0.000 + CDS 34938 - 36041 777 ## COG4585 Signal transduction histidine kinase 47 14 Op 3 1/0.200 + CDS 36016 - 36648 832 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain + Term 36657 - 36722 17.6 + Prom 36665 - 36724 8.2 48 15 Op 1 . + CDS 36752 - 37417 881 ## COG0569 K+ transport systems, NAD-binding component 49 15 Op 2 . + CDS 37490 - 37801 573 ## COG4841 Uncharacterized protein conserved in bacteria + Term 37826 - 37862 -0.4 + Prom 37921 - 37980 7.6 50 16 Op 1 2/0.000 + CDS 38004 - 38942 1015 ## COG0463 Glycosyltransferases involved in cell wall biogenesis + Term 38951 - 38981 1.3 + Prom 38953 - 39012 3.7 51 16 Op 2 10/0.000 + CDS 39152 - 40222 982 ## COG3839 ABC-type sugar transport systems, ATPase components 52 16 Op 3 38/0.000 + CDS 40222 - 41097 791 ## COG1175 ABC-type sugar transport systems, permease components 53 16 Op 4 . + CDS 41102 - 41920 712 ## COG0395 ABC-type sugar transport system, permease component 54 16 Op 5 . + CDS 41904 - 43193 1285 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 55 16 Op 6 . + CDS 43217 - 44497 1609 ## COG1653 ABC-type sugar transport system, periplasmic component + Term 44517 - 44575 12.0 56 17 Tu 1 . + CDS 44595 - 46148 1757 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases + Term 46165 - 46215 5.1 - Term 46143 - 46211 11.1 57 18 Tu 1 . - CDS 46214 - 47176 961 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases - Prom 47208 - 47267 5.8 - Term 47245 - 47295 15.4 58 19 Tu 1 . - CDS 47325 - 48335 1018 ## COG0492 Thioredoxin reductase - Prom 48465 - 48524 5.1 + Prom 48452 - 48511 6.0 59 20 Tu 1 . + CDS 48540 - 49130 900 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family + Term 49143 - 49203 13.0 + Prom 49170 - 49229 6.9 60 21 Tu 1 . + CDS 49295 - 49501 252 ## EF2896 hypothetical protein + Term 49505 - 49544 8.0 - Term 49493 - 49531 8.6 61 22 Tu 1 . - CDS 49535 - 50701 1057 ## COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities - Prom 50822 - 50881 7.6 + Prom 50698 - 50757 6.5 62 23 Op 1 . + CDS 50867 - 51253 187 ## PROTEIN SUPPORTED gi|86608329|ref|YP_477091.1| putative ribosomal protein S1 63 23 Op 2 . + CDS 51327 - 51689 323 ## EF2893 hypothetical protein + Term 51698 - 51744 12.1 - Term 51686 - 51731 10.3 64 24 Tu 1 . - CDS 51771 - 51929 87 ## gi|256618321|ref|ZP_05475167.1| predicted protein Predicted protein(s) >gi|307679294|gb|GL456433.1| GENE 1 152 - 319 210 55 aa, chain + ## HITS:1 COG:no KEGG:EF2829 NR:ns ## KEGG: EF2829 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 55 1 55 77 104 89.0 1e-21 MSYPEVFILGRQVDGVYVEYLHGAEKADLFFDYTIARDERNHMNKTNTKDGEWRI >gi|307679294|gb|GL456433.1| GENE 2 742 - 1209 219 155 aa, chain + ## HITS:1 COG:no KEGG:EF2828 NR:ns ## KEGG: EF2828 # Name: not_defined # Def: ArpU family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 155 1 155 155 290 98.0 2e-77 MVLFDVKKYETPDAKDVDMEQTKHNVSVFLSAYLAARCRVGQPREPKVTASFSLVPPSTA NNVFEAEQMLIQKEEAQEEFDYLHKLFVRGYSAIQHPHKPDVTERRKRIFYDRYINGNPI YLAAQRNCISEESVKQESNMIIVQFASALELVAFK >gi|307679294|gb|GL456433.1| GENE 3 1623 - 1718 88 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFGQTNWRYYLSLGLHLYAVLFVLIVVGFSF >gi|307679294|gb|GL456433.1| GENE 4 1734 - 2021 411 95 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307290789|ref|ZP_07570683.1| ## NR: gi|307290789|ref|ZP_07570683.1| conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX0411] # 1 95 1 95 95 116 100.0 5e-25 MAKAKKEEVQETKTAKKKPAVKEVEQPDNVEVTEEPVEANEITTGTIKVGDLTISNEGIK YESTNDEAPQTIERQTPFGVEVWDPIEKRTVLKDA >gi|307679294|gb|GL456433.1| GENE 5 2098 - 2397 198 99 aa, chain + ## HITS:1 COG:no KEGG:EF2825 NR:ns ## KEGG: EF2825 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 2 74 33 105 124 63 45.0 3e-09 MIKRYYSKNKSFYKSDDWKSVADAVRFRDKYKCTICHKPVFGRDSQVDHIKPIWLNPNLR LDMNNLRLVCATCHPKVEYRPMNQKEIEMKKNYNPADYF >gi|307679294|gb|GL456433.1| GENE 6 2501 - 2959 387 152 aa, chain + ## HITS:1 COG:no KEGG:EF2824 NR:ns ## KEGG: EF2824 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 5 146 4 140 150 99 45.0 5e-20 MAGRKSKKQKILDEALQHKEFERMRIIEILKSLGKFTPALNPLIEMYLDACEVYHIKYLE WKDSGFKSTKVHTNKNGSRNEIKHPLAQQVEVWSEKKTKLLNQLGLDMKSGGLDYVDPLA SENAKKKEEAKKDEPQTNNRLVEFRKMRGGQS >gi|307679294|gb|GL456433.1| GENE 7 2956 - 4689 1159 577 aa, chain + ## HITS:1 COG:CAC1895 KEGG:ns NR:ns ## COG: CAC1895 COG4626 # Protein_GI_number: 15895169 # Func_class: R General function prediction only # Function: Phage terminase-like protein, large subunit # Organism: Clostridium acetobutylicum # 29 552 65 574 596 139 27.0 1e-32 MIDMTVNYADKFAKSVRRHKERYPKSIYLAVKRYNKWKKRKDIFFDLEKANLMLSFTESF YKHSTGEWSGQPLELEDWQKFYFSNIYGWQKWSDKWQRNVRVIRKSYLQVPKKNGKSLME GAPILYGMYGEGVKGAQFYCLAADFDQAQNVANPLATVIENDNDLLDGTRVYRKEKKVTT ISYAFFEDDFKYQNNLRVLSKREKVDGKNTYIVVADEVHEWEDTSRYDGLKSGQAAQPEP LFLVCSTAGKNSGALGVQIYQDSKHILEEDNDDDWFIMIYEPNKGYNWEDEKVWEMVNPN LYVSFDITFLRGEFKDALRNPFRKAEFLSKHLNVFVNYAENYFDKEQIDNCLVDDLGDIT GEQVAIGIDLSRTTDLTCVSINIPTFNDEGESIIKIKQMYFVPTHNIEEKEKLRNVPYQY YAEQGFVTLCEGRTVDYDLVYNYVIDMYNKYELDIIQINYDPAMSEKLVERFEMEGFNTA EVGQYPSVMNEMLDDFEILVDNGRVQTDNPLFIFCTNNTTVVTNIQSQKAPSKRKSPEHI DGFVAFLIGHKDSMDLMVEVGSEEEYEDYIKQLYNRK >gi|307679294|gb|GL456433.1| GENE 8 4708 - 5877 1192 389 aa, chain + ## HITS:1 COG:no KEGG:BC2585 NR:ns ## KEGG: BC2585 # Name: not_defined # Def: portal protein # Organism: B.cereus # Pathway: not_defined # 1 389 1 388 394 293 42.0 1e-77 MGIRSWFNQRFRMSSKKKVLGSSILANQFVLGDENILSSSDVYHYLLAISNMFACGSWTI EKEDGKDIKGAKELQSLKHPNGYLTDFEFKRLLVNVYLLQGEVFVVKDGKQLHIMKGITP EISEEGIKQFKYDGHTLYQNEVRQIKNIGLSNNYGNGLIDLARDTLEGVMNAEKALTEKY KKGGLLAYLLKLDTHLSPKNAMQNAMLDAIQGQLEEIPDEGKTVIIPLSKGYAIEGFESP VQDDKILSYLNVYKPELAKFLGFDPDAYNQLLKVDLEKAAIYLKAFVVDPIVQNVCEHLT ELYFGPESTNRISLTIDIKKYLTMSQKITNTQGLVRTMVYTPDDARVDLGAERLNTEEST KLYASKDLIGLDELTELNKSKMEEGDSTG >gi|307679294|gb|GL456433.1| GENE 9 5909 - 6445 518 178 aa, chain + ## HITS:1 COG:RSc1683 KEGG:ns NR:ns ## COG: RSc1683 COG3740 # Protein_GI_number: 17546402 # Func_class: R General function prediction only # Function: Phage head maturation protease # Organism: Ralstonia solanacearum # 4 154 17 171 203 109 45.0 2e-24 MTTRSLDDGSESTVVEGYASVFNSRTNIDGWYDEEIAPGAFSESLAKNKDVRCLFNHDWN YVLGRKSANTLIIEEDSRGLHFEVTLPNTTFANDLKESMSRGDINQCSFGFWVTAQEEDY SGDVPLIRITNVDLWEVSIVPLPAYEDTEASLRSKFQEKNIETIKLRNKILKTIGEYK >gi|307679294|gb|GL456433.1| GENE 10 6445 - 7776 1803 443 aa, chain + ## HITS:1 COG:no KEGG:EF2820 NR:ns ## KEGG: EF2820 # Name: not_defined # Def: major capsid protein # Organism: E.faecalis # Pathway: not_defined # 8 434 14 449 454 258 40.0 3e-67 MKMRKILEKRAAKLKAKLASMEERAKSETLTRDELSDIESQVEEVTAELDEINDAIAELP EEDVTELGDVVDDLGAATDEIVEEVDGKGTEEDDLEPADDKERSRVLDIIGKGISSRGEE KVKKLTQRSAFLRYLAGRITPNQARSFGVGFNNGKVLVPQELSKEIISYLQEENPLRKFA SVHQTKGTQGFPVQVKQAEANTVTSERDENNLIPFTDIEFDDVYLNPIEFDAIIKVTKKL THMSDFDIEAIVLDELKKAYLRKETFWYFSSPDNKGALAKKAVAFTGKGDNNYLKVVQLK NALPTAMRSGARFMINRAAQTLLESMLDSTGNPILKDAGNDDFDYKLFTYPVEVTDYADK YNETTKKFDPTVPVIYFGNFSYFHIQDVIGSLEIEKLTELFARENKVGFKIYHLNDGQLI YGPFETPVYSLDLSTTPAPNPGE >gi|307679294|gb|GL456433.1| GENE 11 7779 - 8066 247 95 aa, chain + ## HITS:1 COG:no KEGG:EF2819 NR:ns ## KEGG: EF2819 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 6 75 12 81 93 66 48.0 4e-10 MEINLEGFKSHLQFEEGMDDGMLEFYLDMGKKYAKRATDDENSSVAYYIASIFWLYKVPE AEMENAFNALTPLILSEGLVVDDAKSNAKQNEMES >gi|307679294|gb|GL456433.1| GENE 12 8026 - 8352 357 108 aa, chain + ## HITS:1 COG:no KEGG:EF2818 NR:ns ## KEGG: EF2818 # Name: not_defined # Def: minor structural protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 108 1 108 108 114 62.0 9e-25 MPKVTLNRMKWKAELCKQVPGLDNNDRPAIIHEKIRDIFYVELGITSQEKYLSKQAKIDV VRRIRVRFDKSITETINTLRIDSVTYKITRIYTDMDKREMELSLAYVD >gi|307679294|gb|GL456433.1| GENE 13 8342 - 8680 341 112 aa, chain + ## HITS:1 COG:no KEGG:EF2817 NR:ns ## KEGG: EF2817 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 112 1 112 112 195 90.0 5e-49 MSISFEKLRATLKTVGVPVTRDKAEKETDYPYIVYSNVSKGKKMASSKVHRRLPYYQISF YTTGTEKDLTDLENALENAGIPYTDFVGIQGDENDDTVTNFYTYIRCLEDGQ >gi|307679294|gb|GL456433.1| GENE 14 8670 - 9032 392 120 aa, chain + ## HITS:1 COG:no KEGG:EF2816 NR:ns ## KEGG: EF2816 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 120 1 120 120 190 85.0 1e-47 MANNNGFADMADYLGTLVQVDPTKLSLESLTDAANFYREQLLPKIPKSLLKKKHMADQVK VIIEDDQVQVAFEGTAFYWRFAENGTKNQKAQHFASGTFEQNKDQIEKIMTQQILDLWEG >gi|307679294|gb|GL456433.1| GENE 15 9038 - 9676 703 212 aa, chain + ## HITS:1 COG:no KEGG:EF2815 NR:ns ## KEGG: EF2815 # Name: not_defined # Def: phi13 family major tail protein # Organism: E.faecalis # Pathway: not_defined # 1 212 4 214 214 357 86.0 2e-97 MGKQDVYYFEGLDDILIAMMATPDEVDSAPTYSEVVRLPIATKLGIKGNGTALEKWASSK MFRRVSRETKHEIGLDHVGIPIEVMDELKGLIAQAGVTFGKNTAREFPYFAFGFIGNIED GGKKAVWYPKTQLSNVIDEEYTTAEDETKIDDVTANFVSVGLKNNNVMYSSFDSNRSSAK SGDFEKFIAQPIYDEEQWKKLVTPSTPGGGGE >gi|307679294|gb|GL456433.1| GENE 16 9676 - 10185 309 169 aa, chain + ## HITS:1 COG:no KEGG:EF2814 NR:ns ## KEGG: EF2814 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 130 1 130 151 228 83.0 6e-59 MAKLADYGIVVSDTPTVTIKGHQFPILLTMETMEHIADIYDDDYSKFEEDMNAMLNKSGG RISSKDLSASDLKIMRALIYGMLKTGGLDETPETIFKFLGMNSTVVEVYGACMEVFTEQN FQVDDVKNPRSHKIIKLRNKRKTKRKNTNGSRNALGFLLIRRPYSFRME >gi|307679294|gb|GL456433.1| GENE 17 10196 - 10306 100 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKSTPNLWLKSYIQWLTSNTEFEPPASVTMDKSPWW >gi|307679294|gb|GL456433.1| GENE 18 10322 - 12625 2154 767 aa, chain + ## HITS:1 COG:L60836_1 KEGG:ns NR:ns ## COG: L60836_1 COG5280 # Protein_GI_number: 15673031 # Func_class: S Function unknown # Function: Phage-related minor tail protein # Organism: Lactococcus lactis # 1 506 1 514 612 229 31.0 2e-59 MSKKESDVVLNFKTNGEVNYSRTIKDINKEMNLAATEYKNQVSAMDKDATQTEKLTATKK KLEKQLSLAEQRTKLLREEYEKSVKETGEYSEQSQKLYKRLLESETGENKLRSALESTNE ALKEQGDLSVKTAEKLAKIEKAGDKMKSVGKKMTVGLTAPIMGIGAASIAAFKELDDSLD SITTATGATGEQLESLQDSFKTVAGQIPTDMENISTGIGEVNTQFGLMDKQLEDTTGLML KFSEINGSDVSQSTINAKKSMDLFRLSIEDLPMILDSVSKTSQDTGVGVDQLFDAVNRGA PQLKAMGLGFSESTTLIGQMEKAGIDSAGTLGYLAKASVVYAKDNKTMQDGLSGTIESIK GATTEQEKLTIASEVFGTKAASKMVEAIDSGALSMDGLADSAKNAAGTVDQTFNDILDPI DQAKIAQNQFKIAMGELGEQVQIALLPAFEAASNAIQKVSTWFSGLTDNQKQTIITIAGV VAAIGPVLVVLGTLASSISSLIPVIAFIASPIGIVIAALAAFVAGIVIAYNKVGWFRDFI NTSFNVIKDIVVGVFKVLADTTKSTFDFITGFIGGAMDGAVKIISDYVNAITRIFGGIID FVTGVFTGDWSRAWQGVVDIFGGIFEGIAAVAKAPINAMITLINGFLGGLNNIKIPKWIP GVGGKGFSIAKIPYLAEGGHMINGQAIVGEAGPELLTAKNGKTTVTPLSQDEKARGIGGA LDQGKTIEQHVYFGQVDANNPSELDRMNRKLYKASAQAFYDLGGVPT >gi|307679294|gb|GL456433.1| GENE 19 12622 - 13335 630 237 aa, chain + ## HITS:1 COG:CAC0062 KEGG:ns NR:ns ## COG: CAC0062 COG4722 # Protein_GI_number: 15893359 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Clostridium acetobutylicum # 10 224 3 218 231 59 26.0 6e-09 MIFMNRDEPNFIWKGLNAVRDMGCIIENELPDILPNKRYDTYSIVGRSGEFNETFNDYEP FDYEIEDVTIPYENLKEVKRWLTGKSKLITHNDEDKYLDAICAISKQISFKNEWGVFYTF NIEFRCQPFKRKVNEQPVLIKTKAVEITDHGDETAFPYIEIDSKGGDITLSIGSNSLTIL RTQTGIVTIDNEKGKVIQEGLPLFTRGSWIKTNPGQNTLNISGNFTEAKFWNRSAYL >gi|307679294|gb|GL456433.1| GENE 20 13332 - 16034 2283 900 aa, chain + ## HITS:1 COG:L63739_1 KEGG:ns NR:ns ## COG: L63739_1 COG4926 # Protein_GI_number: 15673033 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Lactococcus lactis # 17 742 15 727 727 196 27.0 1e-49 MTQNFIYAYTAIPENLNDNGMALPDWQDLPEINRVLNGAYRFYGNYARDGQYRSYLKKGN FLKAQVEDGSYQYFEIYNIKKNLQSVSVTARHIGFMANKNFIIDSFTANGNGTQIMNNLK AALTFKQRFNYLSNVGTTHQFTAKQVAPIDAIIGSNNGNQNLTGVTGGELEMDNFNLKLV KQIGSDNGFRIDFGVNLEAIDEDYDDESIINSLFLIGGVPDNDYDQDKEPITYGFLEIAG VNDSNRRIGKRENSECKTVEELKEWGQSLFDKDRIHEPKVTHTISMVALEHTLEYEDIYE ELSSLHFGDVAHVRAKEVGIEVTERMVEYTWFPTLGKFKDIVLGNDLSLYTSTANNQTQE LKRKIDNRTETLVQNVLNATAWITGNSGGHVVFRPEKAPSEILIMDTNKIATAKRVWRWN LNGLGYSDNGVNGPFGLAMTSKGEIVADFIKVGIINANVLQTSFNKATGDVLKLVSGALQ IWNEKTKIMELTKKGMEFWNGNSHVGTMGTKGNPFPGLADKHGNPVVSDGNSLLLVADNP QKIIGLSNQSGTGHLITGPTQFFVGNNFNFFGPEGSKAILTVDRLIVGGKEVIPGDGSGG NDGDVPPELTTEKEKNAWAVWQFLKSKGYSEQAAAGILGNMEQESGIMPDIDEGGGGPGY GLVQWTSPIAGESGRAYVQRLLGQAGISGDYRNITTQLKLLDWHMHNGQYIPSAAYPYSV AQFKALTDIGTATMAFEANFERPAVTHPERIPMAQYWYELLHNLKPGTNKWVNPVRSSYT ITQEWDEIGWGTNVIHGGIDIASMPAGSMPPVYVARSGTVETVTYDGTGGNYVVINHDDG YWSYYGHLDSVDLSVGDKVTTNSRVGIMGATGLASGVHLHFEVWKGAQWQRINPRDVINF >gi|307679294|gb|GL456433.1| GENE 21 16049 - 16957 825 302 aa, chain + ## HITS:1 COG:no KEGG:EF2810 NR:ns ## KEGG: EF2810 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 302 1 302 302 573 96.0 1e-162 MVKWQATLSTTEPYNYIGIQNVRQGNRNTEVLEAILVENALPLDLTGCEVFFESVIDKKY PIQRATKIVNAKKGIIQYTFDEYSMQSLHRQEAYFSIHKGDNLIGSTQNFSYFVVNAASK TEGEMGSYWQSIEDLIADMAAFINENKGDFTAWMNARKEEFEKWRKNQQDTFEAWRNGQE SDYLKWFESIKDILKTVDPGGTMLAELMDARVDIQGVRHNSLSERLLADMDYLYHRLEER LYTIKYGNINTLEILEDNSFSKNHEVEVVGTVNYPIEEGALIIATVDDPKQIVFTIEGVD NG >gi|307679294|gb|GL456433.1| GENE 22 16950 - 17267 411 105 aa, chain + ## HITS:1 COG:no KEGG:MPTP_1474 NR:ns ## KEGG: MPTP_1474 # Name: not_defined # Def: hypothetical protein # Organism: M.plutonius # Pathway: not_defined # 1 60 1 60 205 73 60.0 3e-12 MVDAKRMMETDENGIKRQFFPMTHVSAILGLTEIMAGNSKVSSVNGHTGAVIITRADLDL PIDGIMISKQEYDKILKIIADYEAGKLGGSGVEFEKVKGDEEINA >gi|307679294|gb|GL456433.1| GENE 23 17260 - 17577 557 105 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227519942|ref|ZP_03949991.1| ## NR: gi|227519942|ref|ZP_03949991.1| hypothetical protein HMPREF0348_2925 [Enterococcus faecalis TX0104] conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX0635] hypothetical protein HMPREF0348_2925 [Enterococcus faecalis TX0104] conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX0635] conserved domain protein [Enterococcus faecalis TX0309B] conserved domain protein [Enterococcus faecalis TX0309A] # 1 105 1 105 105 168 100.0 1e-40 MPDLYVVKKDGVAIDVQTSTAGVVGLNEFVDGKISGAEAGTVSSVNGHTGEVILTASDVK ALPDTTVIPTLPSNATSEKDGLMSKTDKAKLDALPVFTFEKVGEA >gi|307679294|gb|GL456433.1| GENE 24 17577 - 18140 571 187 aa, chain + ## HITS:1 COG:no KEGG:EF2807 NR:ns ## KEGG: EF2807 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 186 1 182 183 130 43.0 4e-29 MADIVQLKENGVVKYMKTHADAIDGVEGKLVKDVGNETVLGTKNFQDGVQIGGKVVTADR IWRTAYENWGEGFYCAASENRDLGEFSKISQVILLIGRYTGAGNDERYAYSEHSFNFPQT RLGTFFYQPLISYDGGSAASSIPEVALKKIKFANVSGRLRLQGDDYNSTNSRSKGYTVKA VYVLEKA >gi|307679294|gb|GL456433.1| GENE 25 18156 - 18530 493 124 aa, chain + ## HITS:1 COG:no KEGG:EF2806 NR:ns ## KEGG: EF2806 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 124 1 124 124 157 78.0 1e-37 MKTIYKVLYPVGFEAQEVNDTYSVVLPFVDEQPLEGLANEQSQFFNFEESKWEEAVTQDY SKKLSLLENLSASLQVDNSALKQANEELAAKAELLAQINSKTMLTSLQNTKEIDAIKEQI GGAE >gi|307679294|gb|GL456433.1| GENE 26 18530 - 18667 158 45 aa, chain + ## HITS:1 COG:no KEGG:EF2805 NR:ns ## KEGG: EF2805 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 45 1 45 45 78 93.0 7e-14 MYSYDDIKLMFDWGLFTPEQVAEFVPSCITEEEFTKMTGKPFSKS >gi|307679294|gb|GL456433.1| GENE 27 18703 - 18936 303 77 aa, chain + ## HITS:1 COG:no KEGG:EF2804 NR:ns ## KEGG: EF2804 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 77 1 77 77 138 98.0 8e-32 MKDEPLIEIVDRLARIETKLDNHEQLREKADIALSMAKNNEGDIAEIKENQKWTWRTIAG IGVSVAVYLITKYLGGI >gi|307679294|gb|GL456433.1| GENE 28 18939 - 19142 353 67 aa, chain + ## HITS:1 COG:no KEGG:EF2803 NR:ns ## KEGG: EF2803 # Name: not_defined # Def: holin # Organism: E.faecalis # Pathway: not_defined # 1 67 1 67 68 115 98.0 7e-25 MILPDKYYKIIKWGVLTVLPASSVLVATLGKAYGWQQTDMAVLTINAIATFLGVVTGVSA YNLKDKE >gi|307679294|gb|GL456433.1| GENE 29 19147 - 20232 1176 361 aa, chain + ## HITS:1 COG:SP1937 KEGG:ns NR:ns ## COG: SP1937 COG5263 # Protein_GI_number: 15901761 # Func_class: R General function prediction only # Function: FOG: Glucan-binding domain (YG repeat) # Organism: Streptococcus pneumoniae TIGR4 # 42 190 21 172 318 90 40.0 5e-18 MKKKILVGALVALFFMPAINVDAYQVETRGNINAGWPSTVNRYIIAHDTANMDAGVENEA NNMLNNWQRQEAFTQYVVGGGGRVLQVAENGRIAWGAGDANPYAYAQVELANTSNKAMFK KDYAAYVNLLRDLARQINVTFDLDDPTGYGIKTHLWVTNNLGGNHTDPYGYLASWGISKA QFAQDLQTGLPEDGSDVIVNPGKPNKPKYKVGQNIRFTTIYKNPDAPIAQHVNADTLWTQ VGTITQKLNGRKNLYRVENSGKLLGYANDGDIAELWKNSKPAPAKTFTIGVNEGIVLRTG SPSLYAPIYGVWPKGSQFRYDSVHVADGYVWLGGSDSNGTRIYIPVGPNDGNPDNTWGTG Y >gi|307679294|gb|GL456433.1| GENE 30 20393 - 20926 203 177 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307290814|ref|ZP_07570708.1| ## NR: gi|307290814|ref|ZP_07570708.1| hypothetical protein HMPREF9509_01112 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9509_01112 [Enterococcus faecalis TX0411] # 1 177 13 189 189 305 99.0 8e-82 MSNFKYDELSVSNGKIILTIISGVSLAVNSFTAVSISGLLISSATYYISNALAFYSVDPK SEAGLKRRAKILNTYAWLGTALFICFLISNSLKWDIVESILTFLSRVVVFCSSPIAGYFA LKDDEDYKAPSIKEMKRHTALKIEKDNKKKKFANRDRNVKMNRETKEFVLENEDKKR >gi|307679294|gb|GL456433.1| GENE 31 20943 - 21326 242 127 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307290815|ref|ZP_07570709.1| ## NR: gi|307290815|ref|ZP_07570709.1| conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX0411] # 1 127 1 127 127 196 100.0 5e-49 MEFYVVLFLSILIYLFVLTRKTHLMFKQERIKLNYIFSLLVMFFIFKVHVKIAWEGRDDK RFILFVCKQLLLRYDLALVMLVEVVKHQLEFAISENKVKQETKTDRWFKSRTFRKKYIDI LEDECFA >gi|307679294|gb|GL456433.1| GENE 32 21587 - 22072 302 161 aa, chain + ## HITS:1 COG:no KEGG:EF_C0016 NR:ns ## KEGG: EF_C0016 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 2 157 1 161 168 209 71.0 4e-53 MVRRTKKEFKPYNDYVDRPFELKWPTAFPLGELTEAIKNTDEYHARNIKRLPQQSQQQIE YFLDRSIKQNKVLEIQLNSLDEYDRVKPHVFGVFRGMAEFDVVLIGENEVDFYDIRHIQI HNFTKWSEEYVIEENPFEEEQEHCETIDEFVDEYFNDEWIE >gi|307679294|gb|GL456433.1| GENE 33 22216 - 22302 87 28 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGIQLLDHIIVGDSGYISLREENFFASE >gi|307679294|gb|GL456433.1| GENE 34 22456 - 22656 335 66 aa, chain + ## HITS:1 COG:lin1401 KEGG:ns NR:ns ## COG: lin1401 COG1278 # Protein_GI_number: 16800469 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Listeria innocua # 1 65 1 65 66 97 84.0 4e-21 MEQGTVKWFNAEKGFGFISREDGSDVFVHFSAIQGDGFKTLEEGQAVTFDVEDSDRGPQA VNVEKN >gi|307679294|gb|GL456433.1| GENE 35 22762 - 24447 1874 561 aa, chain - ## HITS:1 COG:SPy1876 KEGG:ns NR:ns ## COG: SPy1876 COG0595 # Protein_GI_number: 15675695 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Streptococcus pyogenes M1 GAS # 3 555 4 556 560 863 74.0 0 MKVNIKNNETGVFAIGGLGEIGKNTYGVQFQDEIIIIDAGIKFPEDDLLGIDYVIPDYSY IVQNLHKVKALVITHGHEDHIGGVPYLLRQANIPIYAGPLALALITNKLDEHGLLREAEL HEINEDTVIRFRKTAISFFRTTHSIPDALGVVVKTPSGNIVATGDFKFDFTPVGEPANLH RMAKLGEEGVLCLLSDSTNAEIPTFTKSEKTIGTSILKIFEKIDGRIIFASFASNIFRLQ QAADAAVKTGRKIAVFGRSMENAIVNGERLGYIKVPKGTFVDAAELNQLPANETMILCTG SQGEPMAALSRIANGTHRQISIQPGDTVVFSSSPIPGNTTSVNRLINLLSEAGAEVIHGK INNIHTSGHGGQEEQKLMLRLMKPKYFMPVHGEFRMLKIHASLAQDTGVPEENCFIMGNG DVLALTADSARPAGHFNANDVYVDGNGVGDIGNVVLRDRRILSEEGLVLAVATVDIKNKE IMAGPDILSRGFVYMRESGDMIHEGQRLLFNALREAMKDKNCTEAKLGEAMTTALQPFLF EQTERHPMILPMIMTATVSDQ >gi|307679294|gb|GL456433.1| GENE 36 24449 - 24661 246 70 aa, chain - ## HITS:1 COG:SPy1875 KEGG:ns NR:ns ## COG: SPy1875 COG5503 # Protein_GI_number: 15675694 # Func_class: S Function unknown # Function: Uncharacterized conserved small protein # Organism: Streptococcus pyogenes M1 GAS # 1 70 1 76 76 65 53.0 2e-11 MIYKVYYQETKIRNPKREDTKSLYMEADSDVIVRQLVEENTPYNIEYVQLLDEKHLAYEQ EHADFTLTEF >gi|307679294|gb|GL456433.1| GENE 37 24967 - 25353 334 128 aa, chain - ## HITS:1 COG:SA0161 KEGG:ns NR:ns ## COG: SA0161 COG2832 # Protein_GI_number: 15925870 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 3 92 2 91 127 57 34.0 9e-09 MKKLFFIFLGSCTFALGTLGIFLPLLPTTGFYLLTAFFWMRSSDKLYNKFLASSYYQKYI QEAFFEKKITRKGKWKLFISMFLLFAIPCLIVRNTLMTTTLAIVYLAHVIGLSWYWRPKK KALELDQE >gi|307679294|gb|GL456433.1| GENE 38 25582 - 27309 243 575 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 333 557 132 354 398 98 30 8e-20 MKLMWRYTMRYKKLLFADFICVFGFILIELGLPTILARMIDKGIIPRDMDYIYQQGIWMV VITIIGVAMNILLGYFGARITTNIVRDIRDDLFEKIQTFSHSEYESIGVSSLITRTTNDA YQIMLFMGNILRLGFMTPVMFIASLYMVMRTSPSLGMYVLGALPFLLLAVVGIARLSEPL SKKQQKNLDGINGILRENLSGLRVIRAFVNEKFEESRFNKVNETYTKSSKSLFRLMAAAQ PGFFFLFNIVMVLIIWSGTVQISHGDLEVGNLIAFIEYIFHALFSFMLFASVFMMYPRAA VSASRIQEALDMEPAIREEEGVTETATKGYLEFKNVTFAYPGHAESPVIRNVSFKASPGE TVAFIGSTGSGKSTLIQLIPRFYDVSEGEILIDGVNVKDYQLSALRNKIGYIPQKALLFT GTIADNLRYGKEDATLEEMERAIDIAQATEFVSQKPQGYDEPLSEGGTNFSGGQKQRLAI ARAIIRNPEIYIFDDSFSALDYQTDANLRARLKKETTESTVLIVAQRVGTIMHADRIVVL NEGDVVGIGTHRELLETCPIYYDIAASQLSEEELA >gi|307679294|gb|GL456433.1| GENE 39 27306 - 29075 186 589 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 337 569 1 233 312 76 25 3e-13 MKHAFSSMKRIGRYIKPYRVTFYLVILFTILTVAFNAALPYLTGLPTTEISRNIAAGESI NFDYVIQCLIWILVVGTGYCVAQFLSGFLMTNVVQQSMRDLRRDIEEKINRLPVSYFDKN QQGNILSRVTNDVDAVSNAMQQSFINIVSAVLGIVMAVVMMFLINPLMAIFSVIMIPLSL IISRTIVKISQKYFQGMQNSLGDLNGYVQENMTGFSVLKLYGREKETLEGFKQVNHRLNG FGFKASFISGLMLPLVQMTAYGTYIGVAVLGSYYVVAGVIVVGQLQAFIQYIWQISQPMG NITQLSAALQSASASTMRIFEILDEPEEELNEQDVPLPEPILGSVEFENVSFSYDPEKPL IRNLNFKVDAGQMVAIVGPTGAGKTTLINLLMRFYDVTEGAIKIDGIDTKKMNRSDVRSV FGMVLQDAWLYKGTIADNIRFGKLDATDYEVVDAAKTANVDHFIRTMPDGYEMEINSEGD NVSLGQKQLLTIARAVISDPKILILDEATSSVDTRLEALIQKAMDRVMEGRTSFVIAHRL STIREADLILVMKQGEIIEKGTHHELLEQGGFYEKLYNSQFAEEGDYEE >gi|307679294|gb|GL456433.1| GENE 40 29318 - 29809 471 163 aa, chain + ## HITS:1 COG:CC2643 KEGG:ns NR:ns ## COG: CC2643 COG0663 # Protein_GI_number: 16126878 # Func_class: R General function prediction only # Function: Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily # Organism: Caulobacter vibrioides # 4 154 18 168 176 161 52.0 4e-40 MKKEYFIAASADVYGNVQLAKDSNIWFQSVLRGDSNTITIGEGSNIQDGTIIHVDEDAPT IVGKYVTVGHQCMLHGCKIGDGALIGMGSTILNNAIIGENSLIGAGSLVTEGKIIPPNVL AFGRPAKVIRPLTAAEIASNHTNALHYIQRAEEFRQQKYPKLT >gi|307679294|gb|GL456433.1| GENE 41 29826 - 30974 1351 382 aa, chain + ## HITS:1 COG:BS_yvyH KEGG:ns NR:ns ## COG: BS_yvyH COG0381 # Protein_GI_number: 16080619 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine 2-epimerase # Organism: Bacillus subtilis # 1 382 1 380 380 466 63.0 1e-131 MKKIKVMTVFGTRPEAIKMAPLIKVLEEQSQGFDSVVVVTAQHRQMLDQVLEDFQITPNH DLNIMKDGQTLTDITSRVLNLLTEVLVTEQPDIVLVHGDTTTSFAAALAAFYQQIPVGHV EAGLRTWQKYSPFPEEMNRQLVDVLTDIYFAPTTQSKDNLIKENHPEEHIYVTGNTAIDA MAYTVDAHYQNDLLEKIPTDQRIVLITMHRRENLGLPMANVFKAVRRLVMEHPEIEVIFP MHKNPKVREIVAEHLGELARVHLIEPLDVKDFQNFAAKSALILTDSGGVQEEAPSLGVPV LVLRDTTERPEGVAAGTLKLVGTDEQVVYQEAKTLLTDSDAYHAMAHAQNPYGDGQASRR IVEAIAYEMQKSDKKPDTFTAK >gi|307679294|gb|GL456433.1| GENE 42 31073 - 31726 654 217 aa, chain + ## HITS:1 COG:all2681 KEGG:ns NR:ns ## COG: all2681 COG0546 # Protein_GI_number: 17230173 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Nostoc sp. PCC 7120 # 5 214 6 215 215 184 43.0 1e-46 MYQTILFDLDGTITDSGSGIMRSILYATEQLGWPAPSEETLRSFIGPPLYESFLHMAPSA EAAQQAVGHYRAYYQRKGMFENHVYPGIPEVLIRLKEAGAKLYIATSKPEEFAKKIITHF DLDRYFTGIYGASMDGHRSKKADVIQYALTEAQLDPTKEAIIMVGDRNHDILGAQQNGLD SIGVLYGFGEETELQEAGATFLVHSPKDLGAILLRNS >gi|307679294|gb|GL456433.1| GENE 43 31934 - 33319 1465 461 aa, chain + ## HITS:1 COG:SPy0348 KEGG:ns NR:ns ## COG: SPy0348 COG1559 # Protein_GI_number: 15674503 # Func_class: R General function prediction only # Function: Predicted periplasmic solute-binding protein # Organism: Streptococcus pyogenes M1 GAS # 48 457 102 521 524 317 43.0 3e-86 MANDNQNNQDPKSSLRDQVTGSLNGRNDGDQPDSSEKNDRSPQPSSDESQETASRTTQTR AGSRAARRRGKDKTTQTVEEPTPIETDEKPTNTKKQTRKKEDRLVGRIVLIVVSVLVLMM AIFGFTFYKYVDAGLQPLDKNNKKLVQVHIPEGSSNKQIAAVLEESNVIKSGMVFNYYVK FKNLTDFQAGYYQMSPSMTLDEIGEMLKEGGTPEPTKIADGKVTIPEGYDIDKIGEAIEK NTDFKKADFIALMKNEDFFNQMKAKYPDLLESAATAEGVRYRLEGYLFPATYDYYKKATL PEFVEQMIAKMNTVMEQYTPTIHAKNLTNQQVLTLASLVEKEGVKEADRKQIAQVFFNRL AADMPIQSDISILYALGEHKETVTYADLEVDSSYNLYKNTGYGPGPLDSPSEESIKAVLN PTPSDYLYFVADISTGKVYFSKTYEEHQVLVDQYVNNSSSE >gi|307679294|gb|GL456433.1| GENE 44 33580 - 34059 783 159 aa, chain + ## HITS:1 COG:lin1531 KEGG:ns NR:ns ## COG: lin1531 COG0782 # Protein_GI_number: 16800599 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Listeria innocua # 3 159 4 160 160 196 73.0 1e-50 MVEKVYPMTLEGKEKLEQELEELKTIKRKEIVERIKIARSFGDLSENSEYESAKDEQAFV EGRITTLENMIRFAEIIDNDGVDQDEVSIGKTVTFQELPDGEEEEYTIVGSAEADPFSGK ISNDSPIAQALIGKQLGDQVIIATPGGDMTVKITKVEAN >gi|307679294|gb|GL456433.1| GENE 45 34210 - 34941 702 243 aa, chain + ## HITS:1 COG:lin1019 KEGG:ns NR:ns ## COG: lin1019 COG4758 # Protein_GI_number: 16800088 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 29 243 30 237 237 145 38.0 5e-35 MNNPWRFFIVAEALLFILALWQIVHNPGLAVLLTIGVLLVAYVSRKASKTHFNNFQFVLG VVFIVIGAMNSTAVWFMLIFGVLFIGLKGFEISGVDIAERAPWRKKQMIMVETAAKEPKN GKRFKRRWFANERIGNNIYEWDDINIDLISGDTIIDLGNTLLPKEDNIIIIRKGFGRTRI LVPLGVAILLEHSTFYGTVRFEEEKYQLKNESLKIYSNDYDTNLRRLKIMTNTLVGDVEV IRV >gi|307679294|gb|GL456433.1| GENE 46 34938 - 36041 777 367 aa, chain + ## HITS:1 COG:lin1020 KEGG:ns NR:ns ## COG: lin1020 COG4585 # Protein_GI_number: 16800089 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 6 362 4 352 352 291 50.0 2e-78 MTDRISRRMISLYASLSTFIVILITLFSYFHSIKQNRWLLELLQRKVFYLPLIVHIVLIS LLIGLLTFLLISLVQKGQYGRIEEKLRLLANGNYESPVLNKPTTSENQDHYLTEVEQDIW SIKNKLLEMSKELQLLNSRPQLMDGQTKEEILENERHRLARELHDSVSQQLFAAMMMLSA LNEQAQRTETPEPYRKQLAMVAEIINASQSEMRALLLHLRPISLEGKSLRKGIEQLLKEL QTKIKIELIWDVEDVHLNSSIEDHLFRIVQELLSNTLRHAKAKELEVYLHQVDKNVLLRI VDDGVGFDMKEQSNKAGSYGLNNIRERVVGMGGTVKIISFKGQGTSVEIKVPVIKEETAS DQSNVSG >gi|307679294|gb|GL456433.1| GENE 47 36016 - 36648 832 210 aa, chain + ## HITS:1 COG:lin1021 KEGG:ns NR:ns ## COG: lin1021 COG2197 # Protein_GI_number: 16800090 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Listeria innocua # 1 210 1 210 212 299 79.0 3e-81 MIKVMLVDDHEMVRLGVSSYLSIQEDIEVVGEAENGKIGYEKALELRPDVILMDLVMEEM DGIDSTKAILKDWPEAKIIIVTSFIDDEKVYPAIEAGAAGYLLKTSTAHEIADAIRATYR GERVLEPEVTHKMMERLTKKQEPVLHEDLTNREHEILMLIAQGKSNQEIADELFITLKTV KTHVSNILAKLDVDDRTQAAIYAFQHGLAK >gi|307679294|gb|GL456433.1| GENE 48 36752 - 37417 881 221 aa, chain + ## HITS:1 COG:lin1022 KEGG:ns NR:ns ## COG: lin1022 COG0569 # Protein_GI_number: 16800091 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transport systems, NAD-binding component # Organism: Listeria innocua # 1 219 1 218 219 269 62.0 3e-72 MKQNFAIIGLGRFGGSICQTLVEAGQEVLAIDSSEDRVNEYMNIATHAVVANAQDEMTLR SLGIRNFDHVVVAIGEDIQASILVTLMVKEMGVPNVLAKAVNEYHARVLDKIGADMVVHP ERDMGIRIAHKLVSRNILDYIELSSEFSLAEVRVTNPKFYNKTLAELNFRQRFGLTVVAI RRSKTEVIASPDASEIVRENDNLLVIGDTADVDLLDEKMNG >gi|307679294|gb|GL456433.1| GENE 49 37490 - 37801 573 103 aa, chain + ## HITS:1 COG:BS_yneR KEGG:ns NR:ns ## COG: BS_yneR COG4841 # Protein_GI_number: 16078867 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 95 1 95 95 76 37.0 1e-14 MKLEVTPKAQQWFKEETGVQPETGIRFFGKIYGKTPVHDGFSIAMSVEAPDEPMIKENLD GITYFIEETDDWFFKGYDLIVDYDEKNDEPRYQFEANQEDLTK >gi|307679294|gb|GL456433.1| GENE 50 38004 - 38942 1015 312 aa, chain + ## HITS:1 COG:SPy0510 KEGG:ns NR:ns ## COG: SPy0510 COG0463 # Protein_GI_number: 15674614 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Streptococcus pyogenes M1 GAS # 1 305 3 306 308 381 59.0 1e-106 MLSIVVPCYNEEAAIPLFFEEVEKISQQLSHSVEYIFVNDGSKDNTLAVLRQLYREHPEK VRYLSFSRNFGKEAGLYAGLKEATGDLVTVMDVDLQDPPELLPQMIEMIETSTDLDCVGT RRITRDGEPPIRSFFARMFYKLINRIAETEMVDGARDFRVMTRQMVDAILELSEYNRFSK GIFSWVGFKTEYIEFKNRERIAGETSWSFWSLLSYSIDGIVNFSETPLNIASYVGAFSCI GSALAMLVIIFRTLVNGDPTSGWPSMVCIVLFVGGLQLLCLGIIGKYIGKIFLETKKRPI YIVKESEKDSKK >gi|307679294|gb|GL456433.1| GENE 51 39152 - 40222 982 356 aa, chain + ## HITS:1 COG:PH0022 KEGG:ns NR:ns ## COG: PH0022 COG3839 # Protein_GI_number: 14589983 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Pyrococcus horikoshii # 1 354 10 370 373 263 41.0 4e-70 MIEVIDLKKVFDNGFEALKSVNFTIEQGDLVCLLGPSGCGKSTILNLIAGLLHPSDGDIQ FRQQSVVKTAPKDRNIGFVFQNYALYPHMTVLENVMFPLSVGSKKVPKAEAQAIAEEYMK LTNIEELSHKKPGTLSGGQQQRVAITRALVQKPDVLLLDEPLSNLDARLRLKIREEIRRL VKEVGITTIFVTHDQEEALSISDKIILLNEGVIQQNDEPQNLYLEPNNLFVAQFIGNPII NLLSVEVKDGKMYHKSFEIPLERFEQARFKMPMTDGKYTFASRPEDVVPAETGLFTTTTD LVELIGRERILRFTLGNEQVKSIVSVEEAIEEGDTLSFDFSYKKVFIFNEAGDRVY >gi|307679294|gb|GL456433.1| GENE 52 40222 - 41097 791 291 aa, chain + ## HITS:1 COG:TM0596 KEGG:ns NR:ns ## COG: TM0596 COG1175 # Protein_GI_number: 15643362 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Thermotoga maritima # 45 288 169 414 420 173 42.0 3e-43 MKKYNPENQPKAWLFLLPSLGIILLFSVYPLFRSLWMSFQKGSLINQRYAGLENYQRVLN DPIFYKALKNTALYAFAVVPIALIISLAIAWIIFEKVKHKSFFETIFFMPYVTSTIAIGI VFRYFFNGDYGIVNYVLGFFGIPSVNWLDNVQMSMPTLIIFGVWTSLAFNIIILLAGLRN IDEEHFKIAKMFGASDGEIFRRITFPQLVPTIAFLLTVNLIGAFKVYTQVYALFGGRAGI ANSATTAVYYIYDKFHIAGRPGIAMAATVILFVIILVVTFLQNKLLKKVGQ >gi|307679294|gb|GL456433.1| GENE 53 41102 - 41920 712 272 aa, chain + ## HITS:1 COG:TM0598 KEGG:ns NR:ns ## COG: TM0598 COG0395 # Protein_GI_number: 15643364 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Thermotoga maritima # 52 271 58 277 277 178 42.0 1e-44 MKKVLTIIAFVFLGILAVITLFPFVYMILAGLMSYSEATSMPPTMFPKQPQWQNYTEVFQ KAPFLRYFLNTVFVSGVTTIATVVTAVLASFALTSLKFRFKNVVIALMISLLMVPYESII FTNYQTIAQLGLLNTYSALIIPFLTSIFYIYYLNGYLKGIPDTFYKAAKIDGASDLEYIW RILVPMSKPALVTVGILTFISSWNSFLWPLLVTNEKKYRLLNNGLSAFATESGSDVHLQM AAATLTVIPILIIYLIFRKEIIRGVAKNGIKG >gi|307679294|gb|GL456433.1| GENE 54 41904 - 43193 1285 429 aa, chain + ## HITS:1 COG:PH0466 KEGG:ns NR:ns ## COG: PH0466 COG0595 # Protein_GI_number: 14590378 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Pyrococcus horikoshii # 9 425 4 510 514 98 26.0 2e-20 MESKAKTTVTFHSGILTIGGTVIEVAYKDAHIFFDFGTEFRPELDLPDDHIETLINNRLV PELKDLYDPRLGYEYHGAEDKDYQHTAVFLSHAHLDHSRMINYLDPAVPLYTLKETKMIL NSLNRKGDFLIPSPFEEKNFTREMIGLNKNDVIKVGEISVEIVPVDHDAYGASALLIRTP DHFITYTGDLRLHGHNREETLAFCEKAKHTELLMMEGVSISFPEREPDPAQIAVVSEEDL VQHLVRLELENPNRQITFNGYPANVERFAKIIEKSPRTVVLEANMAALLLEVFGIEVRYY YAESGKIPELNPALEIPYDTLLKDKTDYLWQVVNQFDNLQEGSLYIHSDAQPLGDFDPQY RVFLDLLAKKDITFVRLACSGHAIPEDLDKIIALIEPQVLVPIHTLKPEKLENPYGERIL PERGEQIVL >gi|307679294|gb|GL456433.1| GENE 55 43217 - 44497 1609 426 aa, chain + ## HITS:1 COG:TM0595 KEGG:ns NR:ns ## COG: TM0595 COG1653 # Protein_GI_number: 15643361 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Thermotoga maritima # 44 403 22 389 419 177 31.0 4e-44 MKFKTLATTVLATAAIFALGACGNGNGAKESNDIVKEVKEDTTITFWHAMNGVQEEALTK LTKDFMKENPKIKVELQNQSAYPDLQAKINSTLTSPKDLPTITQAYPGWLWNAAQDEMLV DLKPYMDDDTIGWKDAEPIREVLLDGAKIDGKQYGIPFNKSTEMLFYNADLLKEYGVEVP KTLEELKEASKTIYEKSNKEVVGAGFDSLNNYYAIGMKNKGVDFNKDLDLTSKDSQEVVD YYRDGIEAGYFRTAGSDKYLSGPFANKKVAMFVGSIAGAGFVQKDAEAGGYEYGVAPRPE KINLQQGTDIYMFDSATPEQRTAAFEFMKFLATPDSQLYWAQQTGYMPILESVLHSDEYK NSKTTKVPAQLENAVKDLFAIPVEENADSAYNEMRTIMESIFASSNKDTKKLLKDATSQF EQAWNQ >gi|307679294|gb|GL456433.1| GENE 56 44595 - 46148 1757 517 aa, chain + ## HITS:1 COG:L99798 KEGG:ns NR:ns ## COG: L99798 COG0737 # Protein_GI_number: 15672285 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Lactococcus lactis # 1 516 1 518 519 618 56.0 1e-177 MQIKILATSDMHGYIMPTSYSEKKMDLPFGTAKAATMLKKLRASAKGPVFQIENGDFIQG SPLSYYVRKAETHSVEAITKIINQMNYDVSILGNHEFNYGLDYLKETIASYQQPVLAANI LGKDGQPYFGQPYVIIEKQGVKVAILGVTTQYIPHWEQPATVKDLTFKSVVETAAEYVPK LREEADLVVVAYHGGFEKDLETGEPTELLTGENEGYDLLEKVPGIDALVTGHQHREIATK LNGIPVIQPGFRGAFVGEITLEIEPMAKGYRVIGSDAAIHPVGNEQPDTEVLALTTALHD EVEEWLDQPVGNVEGDMTIQNPNAVRLKEHPYIEFINNVQMASSGTDISGTALFNNEGKG FNNQITMRDIITNYIYPNTLAVLRVTGQDLREALEQSATYFVLEKGQPIFNPKYVDPKPQ YYNYDMYEGIEYTLDLRQPFGERVTKLNYHGKAVQAEDVLEIVTNQYRAVGGGNYQMFQP EKIIREIQIDMTELIAEYLKKHPIIQASTNDNFKVIW >gi|307679294|gb|GL456433.1| GENE 57 46214 - 47176 961 320 aa, chain - ## HITS:1 COG:BH0949 KEGG:ns NR:ns ## COG: BH0949 COG0111 # Protein_GI_number: 15613512 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Bacillus halodurans # 36 320 35 316 316 196 33.0 5e-50 MNQPIIYLNEVFNEEQLEQVKAVAPNYLVKTSTDHLSSAEEEAIEIMLGWHKEIGPRLLA SETSHLKWIQLISAGADYMDFDKLREKGILLSNGSGIHSVSISEHVLGVLLAHTRGLQES IQQQMQHTWNQTAPSYQQLSGQKMLIVGTGQIGQQLAKFAKGLNLQVYGVNTSGHVTEGF IECYSQKNMSKIIHEMSIVVNILPLTETTKHLYNQALFEKMAPETIFVNVGRGASVATND LITALNNKTIAFAALDVFEEEPLPEDSPLWEMQNVLLTPHISGMTPKFKSKLLAIFIPNL NQFVTDQTLVKNQVSLKKGY >gi|307679294|gb|GL456433.1| GENE 58 47325 - 48335 1018 336 aa, chain - ## HITS:1 COG:lin2489 KEGG:ns NR:ns ## COG: lin2489 COG0492 # Protein_GI_number: 16801551 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Listeria innocua # 1 331 1 331 331 441 61.0 1e-123 MSDEKDIYDLTIIGGGPVGLFAAFYAGIRKAKTKIIDSLPQLGGQLTMLYPEKYIYDIPG FPAIKAGELIANLEKQMQPFQHDVCLEEEVTHLAQEADGLLRLDTTKGTHYSKTVIFAIG NGAFQPRRLAIENVEAFEGQSIHYYVTDMKKFAGKKVAIAGGGDSAIDWALMLENVAEEV SIIHRRPQFRGHEHSVEQLEKSSVSIRTPYIISDILKENETFTGIQLTETKGDQTLDLPL DDLIINYGFTSSLTHLKEWGLDVSRNAINVHSDMSTNIPGVYAVGDICSYEGKVKLIATG FGEAPTAVNNALHYLRPDARRQPVHSTSLFENGVPK >gi|307679294|gb|GL456433.1| GENE 59 48540 - 49130 900 196 aa, chain + ## HITS:1 COG:lin2475 KEGG:ns NR:ns ## COG: lin2475 COG0652 # Protein_GI_number: 16801537 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Listeria innocua # 4 193 3 193 194 255 67.0 3e-68 MSQFPQLDLENAKGPKAVIKTNRGDITVQLFPEQAPKTVKNFVELAKKGYYDGVIFHRVI PDFMIQGGDPTGTGMGGESIYGEAFEDEFSRDVFNLRGALSMANAGPNTNGSQFFVVTNQ NVPAQMMSQLEDAGFPEEIIEAYKQGGTPWLDFRHTVFGHVVDGMDVVDEIGGVQRDAQD RPTFDVVMDTVEIIGE >gi|307679294|gb|GL456433.1| GENE 60 49295 - 49501 252 68 aa, chain + ## HITS:1 COG:no KEGG:EF2896 NR:ns ## KEGG: EF2896 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 68 1 68 68 117 98.0 2e-25 MLEKYRYPMALALFAVILPFIGTFFTYVDQQGIVHEPGFYTIIIGEILLIFSGIWFVRVY LAKRKRKN >gi|307679294|gb|GL456433.1| GENE 61 49535 - 50701 1057 388 aa, chain - ## HITS:1 COG:BS_patB KEGG:ns NR:ns ## COG: BS_patB COG1168 # Protein_GI_number: 16080196 # Func_class: E Amino acid transport and metabolism # Function: Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities # Organism: Bacillus subtilis # 3 388 2 387 387 352 42.0 5e-97 MFNFNETIDRRHTNCVKWDTVETSYHEKDLLPLWVADMDFKVHQPILDALSQVIEQGILG YAVAPNELYQAIQDWQRQHHQLIVEKEEILFNSGVVPSLATAVQAYTVPADSVMICDPVY PPFADVVKQNERRLVRHSLLEVNGHYEVDLVKMEQQIIEEKVKLLLFCNPHNPGGRVWTK EELLAIGRLCQKHQVTVVSDEIHQDLIFKPHTFTSFTVADEAFKEFTVTLTAATKTFNLA GIKNSMLFIPNEKLRQSFVSLQDKNHQGGINTFGYVGTAAAYQTGEEWLTALLDYLKENI DFALSFFREELPSVRVMEPEGTYLLWLDFSSYSLTDRELRDTLIHKGKVVLNPGISFGPQ GSQHMRLNLACSKETLEEGLLRIKKAFN >gi|307679294|gb|GL456433.1| GENE 62 50867 - 51253 187 128 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|86608329|ref|YP_477091.1| putative ribosomal protein S1 [Synechococcus sp. JA-2-3B'a(2-13)] # 1 106 186 291 304 76 34 3e-13 MKRGNLMKYKIGMVLSGTITGLQPYGAFVSLDEETQGLIHVSEVQAGFTKNIHGLLTVGQ KVTVQVIDVDEYSQKISLSLRTLEDKVHSVNHRRKKYFTDKNKKIGFATLDKELPEWIDE AMDKLLEK >gi|307679294|gb|GL456433.1| GENE 63 51327 - 51689 323 120 aa, chain + ## HITS:1 COG:no KEGG:EF2893 NR:ns ## KEGG: EF2893 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 120 1 120 120 224 100.0 7e-58 MSNKKVAGTIILNLNDGSKKFLMHPIGEAIEFAMAKVSDEMTGLASMLQWFKEEVQLDVT SISLVELTNAHINKENVPLFVFEMDEQALKNEMDKDYTWVAPAELKTIWSKYHIEGVPMF >gi|307679294|gb|GL456433.1| GENE 64 51771 - 51929 87 52 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256618321|ref|ZP_05475167.1| ## NR: gi|256618321|ref|ZP_05475167.1| predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis ATCC 4200] # 1 52 2 53 53 62 100.0 8e-09 MFGQHFFSKKLKEVFNLFSFFSIISFLNFLNPNCLSKQFNSLLKIEQFESYI Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:48:25 2011 Seq name: gi|307679293|gb|GL456434.1| Enterococcus faecalis TX0411 genomic scaffold Scfld101, whole genome shotgun sequence Length of sequence - 644 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 56 - 129 77.6 # Met CAT 0 0 + TRNA 150 - 223 89.2 # Met CAT 0 0 + TRNA 258 - 347 62.1 # Ser TGA 0 0 + TRNA 381 - 454 74.1 # Met CAT 0 0 + TRNA 493 - 569 88.4 # Asp GTC 0 0 + TRNA 571 - 641 71.8 # Gly TCC 0 0 Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:48:28 2011 Seq name: gi|307679292|gb|GL456435.1| Enterococcus faecalis TX0411 genomic scaffold Scfld102, whole genome shotgun sequence Length of sequence - 7958 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 3, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 2 1 Op 2 . - CDS 1060 - 2526 1576 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase - Term 2563 - 2626 4.1 3 2 Op 1 8/0.000 - CDS 2649 - 4079 1730 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 4 2 Op 2 7/0.000 - CDS 4103 - 6001 2296 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 5 2 Op 3 . - CDS 6075 - 6917 826 ## COG3711 Transcriptional antiterminator - Prom 7122 - 7181 9.6 - TRNA 7160 - 7231 70.2 # Glu TTC 0 0 - TRNA 7247 - 7334 62.7 # Ser GCT 0 0 + Prom 7064 - 7123 7.2 6 3 Tu 1 . + CDS 7344 - 7649 119 ## gi|257147743|emb|CAR86716.1| Putative protein without homology - TRNA 7345 - 7418 92.9 # Ile GAT 0 0 - TRNA 7432 - 7502 71.8 # Gly TCC 0 0 - TRNA 7517 - 7589 75.8 # Phe GAA 0 0 - TRNA 7595 - 7668 80.1 # Asp GTC 0 0 - TRNA 7717 - 7790 74.1 # Met CAT 0 0 - TRNA 7824 - 7913 62.1 # Ser TGA 0 0 Predicted protein(s) >gi|307679292|gb|GL456435.1| GENE 1 221 - 1039 1098 272 aa, chain - ## HITS:1 COG:lin0517 KEGG:ns NR:ns ## COG: lin0517 COG0406 # Protein_GI_number: 16799592 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 1 269 1 270 270 289 58.0 5e-78 MKKRLTIVGMLFLAILVMVGCGKNQQATTKEKETKPEELTLYIVRHGKTMLNTTDRVQGW SDAVLTPEGEKVVTATGIGLKDVAFQNAYSSDSGRALQTAQLILDQNKAGKDLEVVRDPD LREFNFGSYEGDLNKTMWQDIADDQGVSLEEFMKNMTPESFANSVAKLDQQREESKNNWP AEDYATITKRLKKGLDKIVATESANPGNGNVLVVSHGLSISALLATLFDDFKVPEGGLKN ASVTTIHYKNGEYTLDKVNDVSYLEAGEKESK >gi|307679292|gb|GL456435.1| GENE 2 1060 - 2526 1576 488 aa, chain - ## HITS:1 COG:lin0017 KEGG:ns NR:ns ## COG: lin0017 COG2723 # Protein_GI_number: 16799096 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Listeria innocua # 3 485 6 476 477 551 55.0 1e-157 MGFPENFLWGGATAANQYEGGYLSGGKGLSTLDAITGGSQTEPRRITYLTKEGQKASCTR DQALPEGAIGYIDEELYYPSHVATDFYHHYEEDIALFAEMGFKCFRLSIAWSRICPNGTK EINEEGLAFYDKVFDALLRHGIEPVVTINHFDIPMYLADEYDGWKNREVIDFFVFFCETI FTRYQDKVKYWMTFNEINFLRSWTQIGIHNNDKQSKYQAAHHLFVASAKAVELGHSINPD FQIGMMVAYIPSYPLSCKPEDVMAAVQFNREQEFYMDVQAKGYYPAHKLKEFEREGMKIQ MESEDLAIIQKGTVDYIGFSYYMSTVSTAYPEEVKYVGGNQMPAVKNPYLQESEWGWAVD PLGLRISLCQLSDRYNMPLFVVENGFGAVDTLQEDGSIVDDYRIDYFKQHIEAMRTAVEE DGVNLIGYTPWGCIDLVSAGTGEMKKRYGFIYVDMDDEGQGTLKRTKKKSFNWYKQVIAS NGENLTTE >gi|307679292|gb|GL456435.1| GENE 3 2649 - 4079 1730 476 aa, chain - ## HITS:1 COG:L121426 KEGG:ns NR:ns ## COG: L121426 COG2723 # Protein_GI_number: 15673653 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Lactococcus lactis # 1 476 1 476 477 787 76.0 0 MAFRKDFLWGGATAANQCEGGYNEGGRGLANVDLAPTGPDRFPVITGEKKMFNFDEEHFY PAQEAIDMYHRYKEDIALFGEMGFKTYRLSIAWSRIFPMGDETEPNEEGLKFYEDLFKEC HKYGIEPLVTITHFDCPMHLVEEYGAWRSRKLVGFYENLCRVIFNRYKGLVKYWLTFNEI NMILHAPFMGAGLYFEEGENKEQVKYQAAHHELLASAIATKIAHEVDPENQVGCMLAAGS NYAYTCKPEDVFAARQADRENYFFIDVQSRGEYPAYALKEMARKGIQIEMEEGDEELLKE HTVDFISFSYYSSRVTSTDPEINEQTAGNIFASVKNPYLKASEWGWQIDPLGLRITMNDL YDRYQKPLFIVENGLGAVDTPDENGYVVDDYRIDYLAAHIQAMKDAVEQDGVDLLGYTTW GCIDLVSAGTGEMKKRYGFIYVDRDNEGNGTLKRSKKKSFDWYKKVIATNGEDLSN >gi|307679292|gb|GL456435.1| GENE 4 4103 - 6001 2296 632 aa, chain - ## HITS:1 COG:lin0026_2 KEGG:ns NR:ns ## COG: lin0026_2 COG1263 # Protein_GI_number: 16799105 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Listeria innocua # 85 470 3 384 399 312 49.0 2e-84 MGKYHELAEKIVKNVGGQENINSLTHCITRLRFKLKDESQANDDVLKNMDGVVTVMKSGG QYQVVIGNHVPAVYEEVVSIAGLSGEREEEASSGNLFDRLIDILSGCFQPFLGALAAAGM VKGLNALLVFLKLYTATSGTYTMLNGIGDAIFYFMPVILGYTAAKKFRLHPMVGIVIGAA LCYPTIQGSALQTAFETTAGAGAAAPYNLFGLPAYNTFMGIPWVGANYTSSVVPIIFIIA FAAQVQKVFKRIIPEVVQTFLVPFFVLLIALPIGFLVIGPIVSMLTDLLSAGFTALMSFS PALYGLILGFFWQVLVIFGLHWSVVPLAIMQVTQEGSSQVLTGSFAASFAQTAVVLAMFF KLKDKKLKALCPPAIISGIFGVTEPAIYGITLPKKWPFIYSMIGGAVGGLYLMINNVTAY TMGGLGIFGVLNFINGDDASGMIQSFIAIAIAAVVGFGLTFFFWKDDTVEEEEVIIDKTT IKKENITSPVKGRVLSLKNAEDPAFANGALGNGVVIEPTEGKVVAPFDGTIVTLFPTKHA LGLISDNGTELLIHIGIDTVQLEGEGFEAFVKQGDRVKKGQTLVTFDLEGIKKAGFSTQI PIVVTNTADYLDILEVGSNEVSTSDDLLTALI >gi|307679292|gb|GL456435.1| GENE 5 6075 - 6917 826 280 aa, chain - ## HITS:1 COG:BS_licT KEGG:ns NR:ns ## COG: BS_licT COG3711 # Protein_GI_number: 16080959 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus subtilis # 1 276 1 275 277 256 48.0 4e-68 MIIHKILNNNVVITLDDDKREQIVMGKGIAFKKRIGDWVPDESIDQVFYLANQETSLKFQ ELLGNIPLEMMKLSDDIIVYAKSTLKKSLNDTIYISLTDHLYTALERKKQGIAIKNLLLW DIKRFFPEEYEVGVNALKMVQKRVGMELSTDEAGFIALHLVNAEMEEEVGNIYELTKLMQ EITNIVKYYFKVSFDEDSVYFYRFSTHLKFFCYRLLHQREVVENDDEELYAVIKKKYLNA YRCVEKISLYLNENYDYQVSNEERLYLTIHIARIVQTTEQ >gi|307679292|gb|GL456435.1| GENE 6 7344 - 7649 119 101 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|257147743|emb|CAR86716.1| ## NR: gi|257147743|emb|CAR86716.1| Putative protein without homology [Lactobacillus rhamnosus GG] Putative protein without homology [Lactobacillus rhamnosus Lc 705] # 1 100 1 102 103 97 59.0 4e-19 MGLNGLEPSTSRLSGVRSNQLSYRPQIRKKRVTRIELATTAWKAVVLPLNYTRKFFLDGA GQNRTADTWSFNPLLYQLSYRAKNGLDGTRTRDLLRDRQAF Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:48:42 2011 Seq name: gi|307679291|gb|GL456436.1| Enterococcus faecalis TX0411 genomic scaffold Scfld110, whole genome shotgun sequence Length of sequence - 25725 bp Number of predicted genes - 30, with homology - 29 Number of transcription units - 13, operones - 6 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 987 992 ## EF2224 cell wall surface anchor family protein + Term 1032 - 1084 15.3 2 2 Op 1 7/0.000 + CDS 1544 - 2482 1029 ## COG4209 ABC-type polysaccharide transport system, permease component 3 2 Op 2 14/0.000 + CDS 2494 - 3417 882 ## COG0395 ABC-type sugar transport system, permease component 4 2 Op 3 2/0.000 + CDS 3441 - 4907 1246 ## PROTEIN SUPPORTED gi|15900035|ref|NP_344639.1| ABC transporter, substrate-binding protein + Term 4929 - 4961 -0.1 5 2 Op 4 5/0.000 + CDS 4978 - 5613 473 ## COG5578 Predicted integral membrane protein 6 2 Op 5 7/0.000 + CDS 5585 - 7297 1718 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 7 2 Op 6 . + CDS 7309 - 8790 1561 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain + Term 8794 - 8836 7.3 - Term 8776 - 8830 15.1 8 3 Tu 1 . - CDS 8831 - 10972 1950 ## COG3537 Putative alpha-1,2-mannosidase - Prom 11009 - 11068 12.1 + Prom 11036 - 11095 10.3 9 4 Tu 1 . + CDS 11145 - 12257 589 ## EF2216 hypothetical protein + Term 12261 - 12311 12.0 - Term 12250 - 12296 5.0 10 5 Op 1 1/0.200 - CDS 12301 - 12783 704 ## COG3832 Uncharacterized conserved protein 11 5 Op 2 . - CDS 12805 - 13185 490 ## COG0346 Lactoylglutathione lyase and related lyases - Prom 13283 - 13342 10.5 + Prom 13298 - 13357 11.0 12 6 Tu 1 . + CDS 13397 - 14863 1883 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Term 14881 - 14926 13.2 + Prom 14909 - 14968 5.8 13 7 Tu 1 . + CDS 14991 - 15995 1260 ## EF2212 hypothetical protein + Term 15997 - 16043 12.1 - Term 15985 - 16031 11.3 14 8 Tu 1 . - CDS 16033 - 16386 424 ## COG5294 Uncharacterized protein conserved in bacteria - Prom 16591 - 16650 5.4 15 9 Op 1 . + CDS 16585 - 17289 781 ## COG2738 Predicted Zn-dependent protease + Prom 17291 - 17350 2.5 16 9 Op 2 . + CDS 17373 - 17711 556 ## EF2209 hypothetical protein + Term 17716 - 17743 0.1 - Term 17704 - 17731 0.1 17 10 Op 1 . - CDS 17738 - 18583 794 ## COG0384 Predicted epimerase, PhzC/PhzF homolog 18 10 Op 2 . - CDS 18640 - 19491 652 ## COG2508 Regulator of polyketide synthase expression - Prom 19580 - 19639 4.0 + Prom 19427 - 19486 3.5 19 11 Tu 1 . + CDS 19569 - 20090 592 ## COG0590 Cytosine/adenosine deaminases - Term 20166 - 20198 2.3 20 12 Op 1 . - CDS 20284 - 21420 785 ## COG0582 Integrase - Term 21452 - 21484 -0.1 21 12 Op 2 . - CDS 21487 - 22059 495 ## Cbei_4244 cell wall binding repeat-containing protein 22 12 Op 3 . - CDS 22120 - 22320 178 ## SP70585_0029 phage protein 23 12 Op 4 . - CDS 22362 - 22916 562 ## gi|282598715|ref|YP_003358824.1| hypothetical protein PHIEF11_0034 24 12 Op 5 . - CDS 23004 - 23477 353 ## EF1276 hypothetical protein 25 12 Op 6 . - CDS 23494 - 24066 423 ## COG1396 Predicted transcriptional regulators - Prom 24086 - 24145 9.1 + Prom 23909 - 23968 7.0 26 13 Op 1 . + CDS 24163 - 24249 58 ## 27 13 Op 2 . + CDS 24225 - 24458 226 ## SAOUHSC_02234 repressor-like protein 28 13 Op 3 . + CDS 24540 - 25259 594 ## COG3645 Uncharacterized phage-encoded protein 29 13 Op 4 . + CDS 25275 - 25523 167 ## gi|282598765|ref|YP_003358829.1| putative phage excisionase protein 30 13 Op 5 . + CDS 25545 - 25718 280 ## gi|256961389|ref|ZP_05565560.1| predicted protein Predicted protein(s) >gi|307679291|gb|GL456436.1| GENE 1 1 - 987 992 328 aa, chain + ## HITS:1 COG:no KEGG:EF2224 NR:ns ## KEGG: EF2224 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 328 1172 1499 1499 490 96.0 1e-137 TVNNAKPKLGEAIEYTISFRNTIENGVLNKVVITDQLPKGLTYVKDSLTSVGDEPKPTSL KETNGTITAEYPSITDMKERSIRFKVIVNEEAKAGETILNKAKVDDTVNPPEEPEVPVVP ETNAGKLTATKTVNNAKPKLGETIEYTISFRNTIENGVLNKVVITDQLPKGLTYVKDSLT SVGDEPKPTSLKETNGTITAEYPSITDMKERSIRFKVIVNEEAKAGEIILNKAKVDDGIN PPEEPEVPITPEEPAKNKKETKKVVTDQNKPTKNSKNEIAINKKETSKSSYLPKTGEKVQ KIFAYLGVGLILIVLILYVIKRNKEKEE >gi|307679291|gb|GL456436.1| GENE 2 1544 - 2482 1029 312 aa, chain + ## HITS:1 COG:L129753 KEGG:ns NR:ns ## COG: L129753 COG4209 # Protein_GI_number: 15673479 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type polysaccharide transport system, permease component # Organism: Lactococcus lactis # 7 312 4 310 310 414 72.0 1e-115 MKKKNGFFQNVWRYKALILMALPGFIWFIFFFYIPVLANVVAFKDFHISPDGFLASLRES PWVGFENFKFLFASKDAWLITRNTILYNVVFLAFNLFFAIAFAIIMSELRNRRLVKVYHT MSLLPYFLSWMVINYFVYAFLSPDKGILNQWITGNGGTMINWYADPRWWPVIFVFLNVWK SLGYNSIIYYASVMGIDPTYYEAAMVDGANKWQQIKNVTIPQILPMMSVLLILNIGGIFR ADFGLFYIVPRNSGALYNVTSVLDTYIYNGLTATGDVGMTAAAALYQSVVGACLLLIANL VVRRIEPDSALF >gi|307679291|gb|GL456436.1| GENE 3 2494 - 3417 882 307 aa, chain + ## HITS:1 COG:L128777 KEGG:ns NR:ns ## COG: L128777 COG0395 # Protein_GI_number: 15673478 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Lactococcus lactis # 1 307 1 306 306 411 71.0 1e-115 MKKKKVTSVNVRSFNPTANLIFNIVIAIFAISCVVPFFFVIMISLTSEGSLAANGYRFWP KEFSLEAYRYIFQGAMSQRIIHALGVTVFITVTGTIVNATMTSLYAYVISRSNFPFKKFF TLFALITMLFSPGMVANYLVMTNLLQLKDTIWALILPLALGPFNILVMRTFFKKTVPDSI IESARIDGASEMRIFVSIVLPLAVPGIATISLFAALGYWNDWFNALLYIQKDTLVPLQYL LMKIQNNLEFLSRSTDMGAAAQEGLGVLPSESARMAIVVLSTLPIALTYPFFQKYFVGGL TIGGVKE >gi|307679291|gb|GL456436.1| GENE 4 3441 - 4907 1246 488 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900035|ref|NP_344639.1| ABC transporter, substrate-binding protein [Streptococcus pneumoniae TIGR4] # 1 488 1 491 491 484 48 1e-136 MKKWQKGLAVAGAAALAVGLSACGKSSKDAASKGDDSTPTLLMYRVGDKPDNYDQLIDNA NKIIEKKIGAKLKMEFVGWGDWDQKMSTIVASGESYDISLAQNYATNAQKGAYADLTDLA PKYAKEAYDQLPDNYIKGNTINGKLYAFPILGNSYGQQVLTFNKEYVDKYNLDISKVDGS YESATEVLKEFHKKEPNIAAFAIGQTFFATGNYDFPIGNQYPFAVKTTDTGSPKIINQYA DKDMINNLKVLHQWYKDGLIPTDAATSTTPYDLNTNTWFMRQETQGPMDYGDTILTQAAG KPLVSRPLTEPLKTTAQAQMANYVVANTSKNKEKAVELLGLLNSNPELLNGLVYGEEGKQ YEKVGDDRVKLLKDYTPTTHLSAWNTGNNLIIWPEESVTEDMVKERDKSIEEAKDSPILG FTFVNDKVKTEITNVATVMNRYAASLNTGTVDPEETLPKLMDDLKTAGWDKVQKEMQTQL DEYIQSQK >gi|307679291|gb|GL456436.1| GENE 5 4978 - 5613 473 211 aa, chain + ## HITS:1 COG:SPy1589 KEGG:ns NR:ns ## COG: SPy1589 COG5578 # Protein_GI_number: 15675476 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Streptococcus pyogenes M1 GAS # 5 202 3 200 201 118 37.0 7e-27 MESTGIQRLFYLSWTVIKLNLLFVLFSLAGGIIFGVGPALQMMTDFILEEGMNYQAITVK RAFESWKAHFKRSNCYFLLFLFTLGFVFYNIYLAVQFTGIMWLIITFILFFVSLILVIFY IYMLLYEGSYFISTIDLMKLSFISIFLNLGVFFKVLFGVISIVALTWKMKGLLLFASFAL IMMWCAYVTRKNRQFIDGKLEQNEANLQKTV >gi|307679291|gb|GL456436.1| GENE 6 5585 - 7297 1718 570 aa, chain + ## HITS:1 COG:SPy1588 KEGG:ns NR:ns ## COG: SPy1588 COG2972 # Protein_GI_number: 15675475 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Streptococcus pyogenes M1 GAS # 1 566 6 568 574 360 36.0 4e-99 MKRIFKKLFKKKYLLNRLVQKYSLLLTSIILLTVAALCVYVTYTINLSIDSQKNNAVSQI DSYVTNKNNAATNMINELAGSASKIENMRKYMELSPPEYFDYTYSQWSEDRVSTHFGNNL STLFSTFPDLEEVIIRLDEFDQVLFANRTATNGKKMDMSSIKKHGFQLMRIISDPYTGQP LGELYTVFSSQELLGNQADLLKKSGINAFIYDSAGNQIFSEKAQFTKEEERQLDKRMHTD SDIQQVFHNRYDITEIESSGRSTILLLTSRRVLFQQLFMNYAAILGIGLLLIVILLVGLN RLFKRYSQQVQLILEATRAIGDGNLKERIDTNQVQEELNDIASAINFMVDSLDQYIHDIY TLEIKQRDAHMRALQSQINPHFLYNTLEYIRMYALSRQQEELADVVYAFSTLLRNNINQE KTTTLAEEISFCEKYVYLYQMRYPDQFAYKFEIEETIADVEIPKFIIQPLVENYFVHGID YQRQDNAIKVHAYREGEKIIVAVVDNGKGITANRLEEIRARLNQTEIETEQSIGLRNVHE RLQRFFGESYGLTIEGKEGEGTTIRLSFVA >gi|307679291|gb|GL456436.1| GENE 7 7309 - 8790 1561 493 aa, chain + ## HITS:1 COG:SPy1587 KEGG:ns NR:ns ## COG: SPy1587 COG4753 # Protein_GI_number: 15675474 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Streptococcus pyogenes M1 GAS # 1 492 1 491 494 361 43.0 1e-99 MYRVMFVDDEYMILEGLKWIIPWQELGFEIVKTARSAQEALAFLETESIDVLLTDITMPE MSGIELIEQAKKKGHQFISLILSGYQEFDYVKKGMALQVQDYLLKPVNKQELLANIQRIK TELDQQKKSHARVRLYLENGLMRWLNDEISEGEYEELMQQFATIKPGDFTVLLVEAEMPF LETIKELFMKKGQLLFIESWMSTYHQLLLIYKGARQEAFLFIREIEAILAGQGQIFVGES VNEWETVYESYEKVKQLQAIETFYQEFLPNNQKEQMNRSAEDFTFLAFNQALMIGDMQTI QRELDAIFNQLSQQHATPEYVRYVVFLLFSDISRQYPTVLEENYEKIVEEIRASNNLNTL YALMQQVLAEVKNKPKIKKYSESVSQAVERIEQGYLEELNLKTVADELHLNPSYLGQIFK KETKRSFSQYLNQVRTKHAQKLLLYTDDTINEISEKVGFNNTNYFSKMFKKLNGITPKEF REQYQSNYAGVEE >gi|307679291|gb|GL456436.1| GENE 8 8831 - 10972 1950 713 aa, chain - ## HITS:1 COG:L135972 KEGG:ns NR:ns ## COG: L135972 COG3537 # Protein_GI_number: 15673483 # Func_class: G Carbohydrate transport and metabolism # Function: Putative alpha-1,2-mannosidase # Organism: Lactococcus lactis # 1 710 1 715 717 948 64.0 0 MNIQAIDTRHGTANQHSFSNGNCLPYTGVPFGMNFYAPQTTDQKGSWWFHPEDRTFQGYR VTHQPSPWMGDFSHLLMTPVSGSLSELSLFHAQSSYRPEESLFSPVEINLTQLRYQITSQ LIPSMYGGILTIDYQQKDNHLLLTLPGRYQVKQLDDHQVAVKVINYSGCEDPDFSFYFVL HFEQPLTKWFAPSSGEDGKILLSFGNIAQQVVHFSSSFISEKQAQLNLAREISLRSTEML QQGIADWHNYFDRLKVTHENPEHTKTFYHTLYRTFLFPQTFYELDENQQPIHYDTFSQTV RPGVLYTNNGFWDTYKTVYPLFSLISQEKYEEMLEGFLNSYNETGFLPKWLSPDERGLMP GTLIDAVIADAAVKKIRPDLMPQFLEAMKKGATQQSERENYGRQGTLDYLKYGYVPSTYH ESVNHTLDYAYSDFCISQVAKTLNDSETATFYRQQALNYQQLFNPETGFMQAKDTEGNFR PDFLDIRWGKDYAEGSAWQSSFAVYQDFAGLIKLYGSELAFEKKLIQLCNQAPNFNVEGY GFEIHEMSEMAAIDFGQLAISNQPSFHYPFLFSYIGKPEMAQPLLKQLMQTFNASPTGYP GDEDNGSMSAWYIFNSLGFYPVTPGTGEYVIGMPLVQTAEVKLSNGKQLTIQTSPNKVQQ QFIHEIQLNQEKHTAPYFTHQELLNGGTLDYQLGIVPNPQNTAERPFSLSTEK >gi|307679291|gb|GL456436.1| GENE 9 11145 - 12257 589 370 aa, chain + ## HITS:1 COG:no KEGG:EF2216 NR:ns ## KEGG: EF2216 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 370 1 370 370 573 99.0 1e-162 MIVIYFFSTKSQQFFAYVWAIFPVIAFFLVSFYTLDFLFSPSYLIMVPVFTIMFKINYKK DYSFVALLKMSIRQFVISFLAFIASSSFSWSIILNSSVTFLIVYLFYSSATPMRYHSYLM MFTFCQLIQVKGNTFLMQSQVVAFLIGLFLLALTLNAWWQTGLRQLTSLKSRGHVRFFKS IQLNMKQQKLAVINFWHDLQQIFFGITSFKQFLESPDERVQRFRLAIRMSFTITLSFILM WSVGGIKIIWIPMNVFLLLHPVKAEMNTRIKTRFWGTLLGCFLSLFVVNWLQLPLTHLVV SSLIGIFVYSLKPGTVLQVTMATIFGLCLATISLRGMYAAELRVSFVLLAIFVVCLIDLG LFVYQRILRF >gi|307679291|gb|GL456436.1| GENE 10 12301 - 12783 704 160 aa, chain - ## HITS:1 COG:lin0420 KEGG:ns NR:ns ## COG: lin0420 COG3832 # Protein_GI_number: 16799497 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 12 155 15 156 160 73 34.0 1e-13 MKDTFRLENQTIYFGTERAISASPQTIWRYLTETDKLKQWFPELEIGELGVNGFWRFILP DFEETMPFTDYAEEKYLGVTWDTGIIYFDLKEQAPHQTLLVFSESLPENFTTPRHKDIAG WSIVLNRLKQVVETPDAAPEKIDFPQIENHYLEKLTNLEN >gi|307679291|gb|GL456436.1| GENE 11 12805 - 13185 490 126 aa, chain - ## HITS:1 COG:CAC0249 KEGG:ns NR:ns ## COG: CAC0249 COG0346 # Protein_GI_number: 15893541 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Clostridium acetobutylicum # 1 126 1 126 126 158 61.0 3e-39 MFFKEIHHVAINASNYQATKNFYVEKLGFEVLRENHRPEKNDIKLDLKLGSQELEIFISD QFPARPSYPEALGLRHLAFKVEHIEEVIAFLNEQGIETEPLRVDDFTGEKMTFFFDPDGL PLELHE >gi|307679291|gb|GL456436.1| GENE 12 13397 - 14863 1883 488 aa, chain + ## HITS:1 COG:lin1223_2 KEGG:ns NR:ns ## COG: lin1223_2 COG1263 # Protein_GI_number: 16800292 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Listeria innocua # 92 474 1 383 403 537 74.0 1e-152 MGKFQSDAQQLLKAVGGKENISAVSHCATRMRFVLKDPKKADVPVIEDIPSVKGTFTNAG QFQVIIGNEVPQFYNDFSAISGLEGVSKEEGKAAAKSNLSPVQRVVSVLAEIFTPLIPAL VIGGLILGFRNILEGVPFGFLDGQTIVEVSQFWNGVNSFLWLIGEAIFHFLPVGITWSIT KKMGTTQILGIVLGITLVSPQLLNAYSVATTKAAEIPFWDFGFAQVNMIGYQAQVIPAML AGFLLAYLEIFFRKVIPQAISMIFVPLFALVPTVLAAHVILGPIGWTIGSWVSDIVNAGL TSTFNWLFGAVFGFMYAPLVITGLHHMSNAIDLQLIADFQSTNLWPMIALSNIAQGSAVL AVIFMHRGNKKEEQVSIPAMISCYLGVTEPAMFGINLKYVYPFVAGMIGSAMAGMFATLM GVRATSIGVGGLPGILSIVPQYYLPFLVAMVIAIIVPMGLTYIFRKKGIFNKVDPVDEAT GMLYSEEG >gi|307679291|gb|GL456436.1| GENE 13 14991 - 15995 1260 334 aa, chain + ## HITS:1 COG:no KEGG:EF2212 NR:ns ## KEGG: EF2212 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 334 1 334 334 581 100.0 1e-164 MDIYLKKAILHIIDRETGTPVFSEKELDLTTEYIRTYLTAKISKLSTAQTKTGTLAENSS FVDTLRGIPSDFIKKSQEVTQHWYDVYSGSEDAPSADILFILYELDTVLHVAMIKLNYKE SYTHYVDYEEESVYNKLIINRAILSSKSQKPDEGITVDLDTLAFELLEKRYEFSGEKIWY FSEKVIETQAAPSMEENIKEIKKAVKRIGKKFNEDEFELMASVKEAVYDSIEETGTIDNE QIAEQVFKENVSAKLAYQEEVNESKFVDKTPPVRESREISEKKFGKQKLKMDNGIELIVP LDVYRNGDLIEFVNNPDGTVSIMLKNIEKISNQL >gi|307679291|gb|GL456436.1| GENE 14 16033 - 16386 424 117 aa, chain - ## HITS:1 COG:L177221 KEGG:ns NR:ns ## COG: L177221 COG5294 # Protein_GI_number: 15672565 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 2 117 3 116 120 82 38.0 1e-16 MKTLLKILIPIVILAGGSWGVYNYYYGGEAYYTQITTSGEKKDEKTNSGEAMTIYYYQQP AFNKNGEEKTVELNEARDQPLRMKAYLKLKVNPRKGVISWNEVTEKEVPEKALEKLK >gi|307679291|gb|GL456436.1| GENE 15 16585 - 17289 781 234 aa, chain + ## HITS:1 COG:TM1511 KEGG:ns NR:ns ## COG: TM1511 COG2738 # Protein_GI_number: 15644259 # Func_class: R General function prediction only # Function: Predicted Zn-dependent protease # Organism: Thermotoga maritima # 5 228 2 224 230 175 44.0 7e-44 MMPFYFGIDPTYILVIIGIAISGAASAYVNSTFRKYDQVRSSKHVTGTQAAQYILQKEQI NDVGVQQIAGDLTDNYNSGNKMLSLSEATAQSTSVAAIGVAAHECGHAVQDHTNYVPLRL RAAIVPVANIGSTISFPLILIGVLFSWNQTLINIGILAFSLALIFQLVTLPVEFNASRRA LSILSEGGLLTEEEVPMARKVLFAAALTYVAAALSTFLQLLRLVILFGGNNRRD >gi|307679291|gb|GL456436.1| GENE 16 17373 - 17711 556 112 aa, chain + ## HITS:1 COG:no KEGG:EF2209 NR:ns ## KEGG: EF2209 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 112 1 112 112 132 100.0 5e-30 MKASTKIGIGLSIAAVASVSVAVIASEKIIKKVSHVSNRYKVKKFVDDKFDGNQKLLSIV DDLSDDELDSVLNVVDRVKDGGSKLAEYGEKVKDNTDSLKERFFTFIEDAMK >gi|307679291|gb|GL456436.1| GENE 17 17738 - 18583 794 281 aa, chain - ## HITS:1 COG:lin0782 KEGG:ns NR:ns ## COG: lin0782 COG0384 # Protein_GI_number: 16799856 # Func_class: R General function prediction only # Function: Predicted epimerase, PhzC/PhzF homolog # Organism: Listeria innocua # 1 279 1 279 282 357 63.0 1e-98 MKITAYVASAFSKNHEGGNKAGVVFMTQPLTRTQKMAIAKELGFAETAFISDSKIADFRL EYFTPKEEVDLCGHATIGAFTIMKNLNKLLQTEYTIETNSGLLAITANGEQLFMEQTVPT FYDTLTLEELSGCFDLNAVATAFPIQIVSTGLKDILVPIKNAQLLQDLQPNFEKIKLLSQ KYGVIGMHLFALSEENIICRNFAPLYDIDEEAATGTSNGALACYLYHHQILQKTNYTFAQ GYTLNAPSEVLVRLNTTPQKTIDQVLVGGRGYYVETKELFL >gi|307679291|gb|GL456436.1| GENE 18 18640 - 19491 652 283 aa, chain - ## HITS:1 COG:lin2875 KEGG:ns NR:ns ## COG: lin2875 COG2508 # Protein_GI_number: 16801935 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Listeria innocua # 1 279 1 282 293 131 36.0 1e-30 MIIENLSQLYPKGYLSKTIGSETTYSIPVDDQFFIVNKAFLSIKEQHLLEALFPISENPT ITGNHPWFSYLFQQAKLPAEGTFRMLQIQTNVTKELQAEWQFNLTKMFPDTVDCFSPSNN MYILVEEQSKNTFQQEEIQGIFLTLDTDFDCTSAVFVGNFYSSEDILRRCFHEEQRIFSE ELNSSSRTTVFSLTDVALHYFTKEAMSQNVLVEYYRRLLNKDTDIQPIISALWKNQGNIS STAKDLFMHRNTLHYRLEKFFEQTGLSLKKMDDLIFCYLLLRK >gi|307679291|gb|GL456436.1| GENE 19 19569 - 20090 592 173 aa, chain + ## HITS:1 COG:lin2867 KEGG:ns NR:ns ## COG: lin2867 COG0590 # Protein_GI_number: 16801927 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Listeria innocua # 12 164 2 154 154 193 62.0 1e-49 MGKKETTLTQEEKEFFMREAIAEAKKAEGLAEVPIGAVIVRQGEIIGRGHNLREARQEAT AHAEMYAIQEACRGIENWRLEETQLFVTLEPCPMCSGAMLLARIPEVYYGATDPKAGTAG TLMNLLEDERFNHVAYVEAGVLEEECRLLLVQFFKKLRAKKKEEKLLKNQKKD >gi|307679291|gb|GL456436.1| GENE 20 20284 - 21420 785 378 aa, chain - ## HITS:1 COG:L102735 KEGG:ns NR:ns ## COG: L102735 COG0582 # Protein_GI_number: 15672485 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Lactococcus lactis # 1 375 1 380 382 266 43.0 4e-71 MWIEELPNGKYKYFERYKDPYTEKYRRVSVTLNSKSNQAKKQAMMELQDKINNRMEKKDQ KKVSLENLLNSWWQQHQLSIRKTSVKAYGKILKYIFSNMNVDVLIRNTDTKFFQDFINDL PHSWEYKKKFKSVLNMSFTYAQDMGMIDENPINRVKVVKPPLTKENFENIESKYLEEREV YQLLSYYYSTFQSVHHGRLAEFMYLTGLRAGEAISLTINDYVKNEHAILVNGTLDYSNGY KNATKELPKTLASFRKVELSNRAVEIIEELILEREIKFKEQTNYLFVGKTGNPIQVNSFN ASLKKANESLGKNKINKTISSHIFRHSHISLLAELNVPVKAIMERVGHVDTETTLKIYTH VTKKAKTNLVEALNKYGK >gi|307679291|gb|GL456436.1| GENE 21 21487 - 22059 495 190 aa, chain - ## HITS:1 COG:no KEGG:Cbei_4244 NR:ns ## KEGG: Cbei_4244 # Name: not_defined # Def: cell wall binding repeat-containing protein # Organism: C.beijerinckii # Pathway: not_defined # 61 190 83 214 214 104 44.0 2e-21 MKKITISILLLSSLTLGACDSSSTAPEKNKKETSTTKITEKTSATKTSTSTESTSDNKKT VYNLGEWWEVPNQWKLKIDSVTSTDERNPYSDKSPQQVVIISYTYENLGYEDDIQDLFIM PENVVDSAGIMGETYPVSTTGAKPTPVGATMSGAQAAYGVQNPGGNIKILFKKYDSNRTG QAATFEIPVQ >gi|307679291|gb|GL456436.1| GENE 22 22120 - 22320 178 66 aa, chain - ## HITS:1 COG:no KEGG:SP70585_0029 NR:ns ## KEGG: SP70585_0029 # Name: not_defined # Def: phage protein # Organism: S.pneumoniae_70585 # Pathway: not_defined # 1 65 1 65 304 90 70.0 3e-17 MKVGMRKPSIKKSISARTTGKAKRKFKKAVIPGYGQKGTGFIKNPKKAMYNKVYNKTTFS FWDLFK >gi|307679291|gb|GL456436.1| GENE 23 22362 - 22916 562 184 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282598715|ref|YP_003358824.1| ## NR: gi|282598715|ref|YP_003358824.1| hypothetical protein PHIEF11_0034 [Enterococcus phage phiEf11] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_01190 [Enterococcus faecalis TX0411] putative phage protein [Enterococcus phage phiEf11] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_01190 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9495_00071 [Enterococcus faecalis TX2141] # 1 184 1 184 184 302 100.0 9e-81 MKKIFASMAFLLFVVVIFVGCSKNVNPDSSKSSTQESSKTYKILVDQDSTEQKEKLEKIS EYYKTADPKSYNSNVRVNSMLRDEKAHKGEKVYSLAKIIQIVDEPSDEYIYYMGYVTYAK NDREYVMLAVLKDNVYSKVLQDDEILFWASFAGSYDYTTNLGDNNTLPLLKVDMYKNVTA SEEK >gi|307679291|gb|GL456436.1| GENE 24 23004 - 23477 353 157 aa, chain - ## HITS:1 COG:no KEGG:EF1276 NR:ns ## KEGG: EF1276 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 156 1 156 157 221 71.0 1e-56 MNEYELLVSEVQKKAPVIETDLFQNTGCYGLYRDGRIYIEKSLSLIKKRNVLAEELGHHD TSFGDILNQDCLENRKQELKARQYALEQLVTLDDLIKCSESGFSNHYTCAEFLGVDVETL KNVLAYYRQKFGDTHFYKGRIFEFNDLSVMILNTNLQ >gi|307679291|gb|GL456436.1| GENE 25 23494 - 24066 423 190 aa, chain - ## HITS:1 COG:L38687 KEGG:ns NR:ns ## COG: L38687 COG1396 # Protein_GI_number: 15672993 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 3 125 2 123 180 100 52.0 1e-21 MDRVKTSARLKQLMSERNLKQVDILRLSEPYQKELNIKMSKSTLSQYVTGKQSPDQNRIY LLSKTLDVNEAWLMGFDVSKKRIPDEQRSSEKDDFDIVPIFNQLEPKLQQLIYNEAKSHL EKQNKASNNVVNINKKKYDTLAAHSPDPDKVFTDEEKLKINQFLDKVDADYDRKQKECKH LFDDDSDDKE >gi|307679291|gb|GL456436.1| GENE 26 24163 - 24249 58 28 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNNVLYGYKVHVHELEGGVYKCAMITQN >gi|307679291|gb|GL456436.1| GENE 27 24225 - 24458 226 77 aa, chain + ## HITS:1 COG:no KEGG:SAOUHSC_02234 NR:ns ## KEGG: SAOUHSC_02234 # Name: not_defined # Def: repressor-like protein # Organism: S.aureus_NCTC8325 # Pathway: not_defined # 1 73 1 73 74 115 75.0 7e-25 MCYDYSKLAGRIVEKFGTQYNFAIAMGLSERTISLKMNGKVSWKDTEITKACKLLDLETN FIHLYFFKEKVHVCEQR >gi|307679291|gb|GL456436.1| GENE 28 24540 - 25259 594 239 aa, chain + ## HITS:1 COG:SPy0946_2 KEGG:ns NR:ns ## COG: SPy0946_2 COG3645 # Protein_GI_number: 15674964 # Func_class: S Function unknown # Function: Uncharacterized phage-encoded protein # Organism: Streptococcus pyogenes M1 GAS # 118 237 4 123 127 145 56.0 4e-35 MNELIKVTTNENDEQLVNGRELYEFLGVKDNYTDWFKRMIKYGFDENVDFISFSEKSDKP FGGRPQVNHYVKLDMAKEISMLQRTERGKQARRYFIQLEKFWNSPEMLTKRALEFQQKKI EVLQLENESLKPKALFADAVDASKTSILIGDLAKLIKQNGIDIGQNRLFQWLRDNGYLIA RKGESYNMPTQRSLDLGIAEIKERTHNNPDGSIRISRTPKITGKGQIYFVNKFLHDKTA >gi|307679291|gb|GL456436.1| GENE 29 25275 - 25523 167 82 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282598765|ref|YP_003358829.1| ## NR: gi|282598765|ref|YP_003358829.1| putative phage excisionase protein [Enterococcus phage phiEf11] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9505_00042 [Enterococcus faecalis TX0109] hypothetical protein HMPREF9509_01195 [Enterococcus faecalis TX0411] putative phage excisionase protein [Enterococcus phage phiEf11] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_01195 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9505_00042 [Enterococcus faecalis TX0109] hypothetical protein HMPREF9495_00076 [Enterococcus faecalis TX2141] # 1 82 1 82 82 146 100.0 4e-34 MQITLAKTIDLQQAWMAKDEAIVYFGYQHHKPTFQKLLREFKEHKEFKDGYRLVTSCMPI IHIQKFDEFLVWREKNKYKRNK >gi|307679291|gb|GL456436.1| GENE 30 25545 - 25718 280 57 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256961389|ref|ZP_05565560.1| ## NR: gi|256961389|ref|ZP_05565560.1| predicted protein [Enterococcus faecalis Merz96] hypothetical protein PHIEF11_0040 [Enterococcus phage phiEf11] conserved hypothetical protein [Enterococcus faecalis R712] conserved hypothetical protein [Enterococcus faecalis S613] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_01196 [Enterococcus faecalis TX0411] conserved hypothetical protein [Enterococcus faecalis DAPTO 512] conserved hypothetical protein [Enterococcus faecalis DAPTO 516] predicted protein [Enterococcus faecalis Merz96] conserved hypothetical protein [Enterococcus phage phiEf11] conserved hypothetical protein [Enterococcus faecalis R712] conserved hypothetical protein [Enterococcus faecalis S613] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_01196 [Enterococcus faecalis TX0411] conserved hypothetical protein [Enterococcus faecalis DAPTO 512] conserved hypothetical protein [Enterococcus faecalis DAPTO 516] conserved hypothetical protein [Enterococcus faecalis TX2141] # 1 57 1 57 57 92 100.0 1e-17 MRKIYNLRRIAVLLIVFGLGLLVGGNFNPIIQNVYIGLFIIWTLFYDLALEDREVNK Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:50:09 2011 Seq name: gi|307679290|gb|GL456437.1| Enterococcus faecalis TX0411 genomic scaffold Scfld111, whole genome shotgun sequence Length of sequence - 102931 bp Number of predicted genes - 111, with homology - 109 Number of transcription units - 48, operones - 31 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 16 - 75 4.7 1 1 Tu 1 . + CDS 104 - 2110 2047 ## COG3158 K+ transporter + Term 2168 - 2221 1.3 - Term 2119 - 2167 1.1 2 2 Tu 1 . - CDS 2180 - 2878 536 ## EF0873 Cro/CI family transcriptional regulator - Prom 2953 - 3012 6.7 + Prom 2880 - 2939 7.6 3 3 Tu 1 . + CDS 3043 - 5148 2101 ## COG2217 Cation transport ATPase + Term 5162 - 5210 10.2 + Prom 5190 - 5249 4.6 4 4 Op 1 . + CDS 5272 - 6696 371 ## EF0876 hypothetical protein 5 4 Op 2 . + CDS 6765 - 7676 1115 ## COG4989 Predicted oxidoreductase + Term 7726 - 7779 11.6 + Prom 7773 - 7832 7.5 6 5 Op 1 4/0.133 + CDS 7864 - 10512 3249 ## COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains + Term 10555 - 10600 4.1 7 5 Op 2 4/0.133 + CDS 10612 - 11454 936 ## COG0266 Formamidopyrimidine-DNA glycosylase 8 5 Op 3 1/0.133 + CDS 11451 - 12050 799 ## COG0237 Dephospho-CoA kinase + Prom 12136 - 12195 5.7 9 6 Op 1 6/0.133 + CDS 12230 - 12712 544 ## COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains 10 6 Op 2 8/0.067 + CDS 12728 - 14137 1616 ## COG3611 Replication initiation/membrane attachment protein 11 6 Op 3 . + CDS 14137 - 15066 1039 ## COG1484 DNA replication protein + Term 15068 - 15106 -0.9 + Prom 15104 - 15163 4.8 12 7 Op 1 . + CDS 15253 - 16356 940 ## EF0884 hypothetical protein 13 7 Op 2 . + CDS 16370 - 17890 1160 ## EF0885 hypothetical protein 14 7 Op 3 2/0.133 + CDS 17880 - 19463 1367 ## COG5298 Uncharacterized protein conserved in bacteria 15 7 Op 4 . + CDS 19460 - 20722 1102 ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis 16 7 Op 5 . + CDS 20737 - 20979 220 ## EF0888 hypothetical protein 17 7 Op 6 . + CDS 21007 - 22803 1616 ## EF0888 hypothetical protein 18 7 Op 7 . + CDS 22805 - 23239 519 ## COG2199 FOG: GGDEF domain 19 7 Op 8 . + CDS 23303 - 23653 419 ## EF0889 hypothetical protein 20 7 Op 9 . + CDS 23669 - 23980 367 ## EF0890 hypothetical protein + Term 23984 - 24036 15.0 - Term 23972 - 24022 15.6 21 8 Op 1 1/0.133 - CDS 24028 - 25182 1285 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 22 8 Op 2 16/0.000 - CDS 25198 - 25920 633 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 23 8 Op 3 . - CDS 25913 - 27376 1704 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - Prom 27524 - 27583 9.3 + Prom 27349 - 27408 7.9 24 9 Op 1 . + CDS 27431 - 27550 59 ## gi|315149655|gb|EFT93671.1| alcohol dehydrogenase 25 9 Op 2 . + CDS 27565 - 28653 1188 ## COG0371 Glycerol dehydrogenase and related enzymes + Term 28662 - 28712 2.3 + Prom 28721 - 28780 6.3 26 10 Op 1 15/0.000 + CDS 28812 - 29957 1273 ## COG0343 Queuine/archaeosine tRNA-ribosyltransferase + Prom 29960 - 30019 3.7 27 10 Op 2 . + CDS 30039 - 30416 582 ## COG1862 Preprotein translocase subunit YajC + Term 30556 - 30610 2.1 + Prom 30586 - 30645 7.1 28 11 Op 1 . + CDS 30696 - 30983 316 ## EF0899 hypothetical protein 29 11 Op 2 . + CDS 31006 - 31080 66 ## 30 11 Op 3 . + CDS 31139 - 33736 2913 ## COG1454 Alcohol dehydrogenase, class IV + Term 33748 - 33796 14.7 - Term 33740 - 33779 9.3 31 12 Op 1 3/0.133 - CDS 33781 - 34824 1078 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases 32 12 Op 2 5/0.133 - CDS 34808 - 35914 1159 ## COG1577 Mevalonate kinase 33 12 Op 3 5/0.133 - CDS 35917 - 36912 1112 ## COG3407 Mevalonate pyrophosphate decarboxylase 34 12 Op 4 . - CDS 36912 - 37856 904 ## COG1577 Mevalonate kinase - Prom 37998 - 38057 5.7 - Term 37954 - 37988 -0.3 35 13 Op 1 . - CDS 38125 - 38760 463 ## COG1357 Uncharacterized low-complexity proteins 36 13 Op 2 . - CDS 38757 - 39830 986 ## COG1289 Predicted membrane protein - Prom 39936 - 39995 7.5 + Prom 39974 - 40033 9.4 37 14 Tu 1 . + CDS 40074 - 41744 1996 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Term 41775 - 41819 1.3 - Term 41761 - 41809 3.0 38 15 Tu 1 . - CDS 41823 - 42173 305 ## EF0908 hypothetical protein - Prom 42206 - 42265 6.1 + Prom 42100 - 42159 4.0 39 16 Op 1 49/0.000 + CDS 42264 - 43205 244 ## PROTEIN SUPPORTED gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 40 16 Op 2 44/0.000 + CDS 43205 - 44257 1119 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 41 16 Op 3 44/0.000 + CDS 44273 - 45325 1407 ## COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 42 16 Op 4 . + CDS 45325 - 46281 1338 ## COG4608 ABC-type oligopeptide transport system, ATPase component 43 16 Op 5 . + CDS 46322 - 47392 662 ## COG0675 Transposase and inactivated derivatives + Term 47613 - 47646 0.8 + Prom 47540 - 47599 10.2 44 17 Op 1 36/0.000 + CDS 47791 - 48312 426 ## PROTEIN SUPPORTED gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 + Term 48363 - 48396 -0.9 + Prom 48333 - 48392 1.6 45 17 Op 2 46/0.000 + CDS 48426 - 48626 340 ## PROTEIN SUPPORTED gi|29375499|ref|NP_814653.1| 50S ribosomal protein L35 46 17 Op 3 . + CDS 48687 - 49046 595 ## PROTEIN SUPPORTED gi|29375500|ref|NP_814654.1| 50S ribosomal protein L20 + Term 49064 - 49099 7.1 - Term 49011 - 49064 3.2 47 18 Tu 1 . - CDS 49093 - 49443 613 ## PROTEIN SUPPORTED gi|238856926|ref|ZP_04647185.1| 30S ribosomal protein S8 - Prom 49477 - 49536 2.8 + Prom 49455 - 49514 4.1 48 19 Tu 1 . + CDS 49541 - 49900 502 ## COG3759 Predicted membrane protein + Term 49920 - 49977 4.8 + Prom 49947 - 50006 9.2 49 20 Op 1 . + CDS 50028 - 50462 600 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 50 20 Op 2 . + CDS 50480 - 50995 181 ## PROTEIN SUPPORTED gi|148360238|ref|YP_001251445.1| nucleotidyltransferase PLUS glutamate rich protein GrpB PLUS ribosomal protein alanine acetyltransferase - Term 50759 - 50808 2.2 51 21 Tu 1 . - CDS 51011 - 52186 1111 ## COG0659 Sulfate permease and related transporters (MFS superfamily) - Prom 52214 - 52273 3.2 - Term 52322 - 52375 9.9 52 22 Tu 1 . - CDS 52416 - 53444 897 ## COG2855 Predicted membrane protein - Prom 53470 - 53529 6.8 + Prom 53469 - 53528 8.2 53 23 Op 1 2/0.133 + CDS 53551 - 54387 698 ## COG0583 Transcriptional regulator 54 23 Op 2 . + CDS 54452 - 55324 831 ## COG3865 Uncharacterized protein conserved in bacteria + Prom 55488 - 55547 8.6 55 24 Op 1 . + CDS 55596 - 55820 300 ## EF0925 hypothetical protein + Prom 55822 - 55881 3.0 56 24 Op 2 40/0.000 + CDS 55909 - 56583 792 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 57 24 Op 3 . + CDS 56597 - 57622 882 ## COG0642 Signal transduction histidine kinase + Term 57629 - 57672 0.5 + Prom 57641 - 57700 7.7 58 25 Op 1 . + CDS 57770 - 58633 1012 ## COG4975 Putative glucose uptake permease 59 25 Op 2 2/0.133 + CDS 58674 - 60065 1441 ## COG0531 Amino acid transporters + Term 60074 - 60134 13.2 + Prom 60145 - 60204 5.2 60 26 Op 1 . + CDS 60253 - 62262 2392 ## COG0143 Methionyl-tRNA synthetase + Term 62271 - 62328 15.1 + Prom 62276 - 62335 5.1 61 26 Op 2 . + CDS 62362 - 62637 104 ## EF0931 hypothetical protein + Term 62648 - 62703 13.3 - Term 62632 - 62693 12.4 62 27 Op 1 . - CDS 62696 - 63301 464 ## EF0932 hypothetical protein - Prom 63345 - 63404 3.6 63 27 Op 2 . - CDS 63422 - 65620 2179 ## COG3973 Superfamily I DNA and RNA helicases - Prom 65646 - 65705 5.0 + Prom 65621 - 65680 4.3 64 28 Op 1 3/0.133 + CDS 65779 - 66549 1070 ## COG0084 Mg-dependent DNase 65 28 Op 2 7/0.133 + CDS 66558 - 67130 837 ## COG1658 Small primase-like proteins (Toprim domain) 66 28 Op 3 . + CDS 67149 - 68036 922 ## COG0030 Dimethyladenosine transferase (rRNA methylation) + Term 68041 - 68090 13.1 + Prom 68065 - 68124 5.0 67 29 Tu 1 . + CDS 68164 - 68781 773 ## EF0937 hypothetical protein + Term 68792 - 68837 14.0 - Term 68780 - 68824 14.6 68 30 Tu 1 . - CDS 68832 - 69935 1505 ## COG3839 ABC-type sugar transport systems, ATPase components - Prom 69967 - 70026 6.1 + Prom 69849 - 69908 7.6 69 31 Op 1 . + CDS 70121 - 70543 504 ## COG1803 Methylglyoxal synthase + Term 70692 - 70726 0.4 + Prom 70557 - 70616 6.8 70 31 Op 2 . + CDS 70817 - 71356 555 ## EF0940 hypothetical protein + Term 71371 - 71415 7.6 - Term 71359 - 71403 7.6 71 32 Op 1 35/0.000 - CDS 71408 - 73174 212 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 72 32 Op 2 . - CDS 73164 - 74891 183 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 - Prom 75031 - 75090 9.2 + Prom 74927 - 74986 3.6 73 33 Tu 1 . + CDS 75017 - 75784 629 ## COG4905 Predicted membrane protein + Prom 75949 - 76008 7.0 74 34 Op 1 . + CDS 76046 - 77254 1409 ## COG3584 Uncharacterized protein conserved in bacteria + Prom 77256 - 77315 3.5 75 34 Op 2 . + CDS 77351 - 77914 917 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 77918 - 77964 12.3 - Term 77898 - 77959 19.3 76 35 Op 1 . - CDS 77960 - 78484 413 ## COG4894 Uncharacterized conserved protein 77 35 Op 2 . - CDS 78536 - 79405 1048 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 79591 - 79650 6.4 + Prom 79460 - 79519 3.8 78 36 Tu 1 . + CDS 79539 - 80219 777 ## COG0692 Uracil DNA glycosylase + Prom 80289 - 80348 5.1 79 37 Tu 1 . + CDS 80375 - 81358 1261 ## COG0280 Phosphotransacetylase + Term 81394 - 81442 5.5 + Prom 81426 - 81485 8.5 80 38 Op 1 3/0.133 + CDS 81516 - 81995 643 ## COG0802 Predicted ATPase or kinase 81 38 Op 2 . + CDS 81988 - 82509 216 ## PROTEIN SUPPORTED gi|229236145|ref|ZP_04360568.1| acetyltransferase, ribosomal protein N-acetylase + Term 82543 - 82601 11.3 + Prom 82572 - 82631 12.4 82 39 Tu 1 . + CDS 82679 - 82888 316 ## EF0953 hypothetical protein + Term 82921 - 82973 16.7 - Term 82913 - 82957 12.4 83 40 Op 1 1/0.133 - CDS 82962 - 83972 1028 ## COG1609 Transcriptional regulators 84 40 Op 2 . - CDS 83996 - 85003 329 ## PROTEIN SUPPORTED gi|15900011|ref|NP_344615.1| aldose 1-epimerase 85 40 Op 3 11/0.067 - CDS 84993 - 85661 702 ## COG0637 Predicted phosphatase/phosphohexomutase 86 40 Op 4 . - CDS 85654 - 87948 2203 ## COG1554 Trehalose and maltose hydrolases (possible phosphorylases) - Prom 87976 - 88035 7.8 + Prom 88052 - 88111 5.4 87 41 Op 1 1/0.133 + CDS 88238 - 90397 2432 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 88 41 Op 2 . + CDS 90463 - 91287 652 ## COG3568 Metal-dependent hydrolase + Term 91288 - 91329 10.6 - Term 91273 - 91320 14.5 89 42 Tu 1 . - CDS 91347 - 92162 1116 ## COG0345 Pyrroline-5-carboxylate reductase - Prom 92210 - 92269 5.9 90 43 Op 1 . + CDS 92289 - 93251 650 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain 91 43 Op 2 . + CDS 93232 - 93531 361 ## EF0963 hypothetical protein 92 43 Op 3 . + CDS 93503 - 93838 333 ## COG1694 Predicted pyrophosphatase + Term 93871 - 93929 5.0 93 44 Op 1 . - CDS 93993 - 94313 81 ## EF0965 hypothetical protein 94 44 Op 2 . - CDS 94310 - 94705 225 ## EF0965 hypothetical protein 95 44 Op 3 . - CDS 94710 - 95342 534 ## COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components 96 44 Op 4 . - CDS 95353 - 95502 68 ## gi|257086304|ref|ZP_05580665.1| conserved hypothetical protein - Prom 95653 - 95712 11.5 + Prom 95766 - 95825 4.9 97 45 Tu 1 . + CDS 95850 - 96626 687 ## COG0789 Predicted transcriptional regulators + Term 96663 - 96716 10.7 - TRNA 97077 - 97150 76.2 # Arg TCT 0 0 + Prom 97247 - 97306 6.3 98 46 Op 1 14/0.000 + CDS 97418 - 97726 518 ## PROTEIN SUPPORTED gi|29375551|ref|NP_814705.1| 50S ribosomal protein L21 99 46 Op 2 14/0.000 + CDS 97759 - 98103 563 ## PROTEIN SUPPORTED gi|229546816|ref|ZP_04435541.1| possible ribosomal protein 100 46 Op 3 . + CDS 98116 - 98403 485 ## PROTEIN SUPPORTED gi|29375553|ref|NP_814707.1| 50S ribosomal protein L27 + Term 98411 - 98454 8.1 101 47 Op 1 . - CDS 98400 - 98474 84 ## 102 47 Op 2 . - CDS 98493 - 99656 486 ## COG0582 Integrase 103 47 Op 3 . - CDS 99659 - 99898 280 ## gi|307290991|ref|ZP_07570880.1| hypothetical protein HMPREF9509_01300 104 47 Op 4 . - CDS 99900 - 100139 167 ## gi|307290992|ref|ZP_07570881.1| hypothetical protein HMPREF9509_01301 105 47 Op 5 . - CDS 100203 - 100631 161 ## gi|307290993|ref|ZP_07570882.1| toxin-antitoxin system, toxin component family protein 106 47 Op 6 . - CDS 100646 - 101059 385 ## COG1396 Predicted transcriptional regulators + Prom 101082 - 101141 8.8 107 48 Op 1 . + CDS 101327 - 101527 164 ## COG1396 Predicted transcriptional regulators 108 48 Op 2 . + CDS 101531 - 101815 359 ## gi|307290996|ref|ZP_07570885.1| hypothetical protein HMPREF9509_01305 109 48 Op 3 . + CDS 101830 - 102543 752 ## COG3646 Uncharacterized phage-encoded protein 110 48 Op 4 . + CDS 102554 - 102739 263 ## gi|315143729|gb|EFT87745.1| conserved domain protein 111 48 Op 5 . + CDS 102751 - 102924 185 ## gi|307290999|ref|ZP_07570888.1| hypothetical protein HMPREF9509_01308 Predicted protein(s) >gi|307679290|gb|GL456437.1| GENE 1 104 - 2110 2047 668 aa, chain + ## HITS:1 COG:SPy1414 KEGG:ns NR:ns ## COG: SPy1414 COG3158 # Protein_GI_number: 15675333 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transporter # Organism: Streptococcus pyogenes M1 GAS # 12 653 11 647 666 751 58.0 0 MLHKAEGFDRRKFTMAGILVAMGVVYGDIGTSPLYVMKAIVGDNGGLARVSESFILGSVS LIFWTLTILTTIKYVVIALNADNHGEGGIFSLYTLVRKKSKYLIIPAMIGGAALLADGVL TPAVTVTTAIEGLRGIPAFFERFGNDQTIIVVITLTIILILFSVQRFGTELVGKAFGPIM FLWFTFLGIIGLMNFSQDWTVIRALNPYYALQLLVSPENKLGLFILGNIFLATTGAEALY SDLGHVGKMNIRISWPYIKICLILNYLGQAAWLLTVKENPEMQALAEINPFFQMIPRGIL VFGVVFATIAAVIASQALISGSYTLVSEAIKLKLLPRLKIIYPGSNIGQMYIPAVNLILW LACSAIVLAFRTSTHMEAAYGLSITITMLMTTILLLFYLLDKIPAWSAYLISLFFAAIEV VFFFSSAAKFFHGGYVAVGMAVFLLCIMIIWERGNEIKEATAEQVSLEKYVPQLKALKED TSVPMYQTNVVFLTSDRVDGEINRNIIYSILDKQPKRANVYWFVNVQVTDEPFTQEYSVD MLGTDFIVQVQLYLGFHISQEVNVYLRQIVHDLMKTGRLPKQPQRYSLTPGREVGDFQFV LIQEELSNVSELKKWDRQIMQAKLAIKNLTTSPESWFGLEYSEVKYESVPLIIGPQRKTH LVERKNRS >gi|307679290|gb|GL456437.1| GENE 2 2180 - 2878 536 232 aa, chain - ## HITS:1 COG:no KEGG:EF0873 NR:ns ## KEGG: EF0873 # Name: not_defined # Def: Cro/CI family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 232 1 232 232 414 99.0 1e-114 MKITTKQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKAC DTTVDWLLYGDFDRFVRQLLKENFQNKQLLKPPFFTQLMVRLSEEQLSYHDSLKIMIQAQ KLQQSFYAFPLTVEAPSHSQESISIYEPTTAEEQSDQSYYQPFILSELHELFTHSQNPEL DYSLIIAFLPLLKVDQLTEPQKEVLLAIFKRMNSFKDQTLLNEFFVELQYLL >gi|307679290|gb|GL456437.1| GENE 3 3043 - 5148 2101 701 aa, chain + ## HITS:1 COG:MA0166 KEGG:ns NR:ns ## COG: MA0166 COG2217 # Protein_GI_number: 20089064 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Methanosarcina acetivorans str.C2A # 4 698 63 763 764 564 43.0 1e-160 MSAKHNHEQHQEKQPTMSHDKMNHMNHDMAHEQMAMSHQHEGMKAMDHSMHMGNFKQKFW LSLILAIPIIVLSPMMGFQLPFQFTFPGSDWLVLILATVLFFYGGQPFLSGAKMELQQKS PAMMTLIAMGISVSYFYSLYAFYMNHFTNQAHVMDFFWELATLIVIMLLGHWIEMNAISN AGDALKKMAELLPDTVKRMTEHGEEEIPLQDVQEGDRLIVRSGDKIPTDGKILKGSTTVD ESMVTGESKTVEKNIGDSVIGGAVNGNGMIEISVTGTGENSYLSKVMEMVKQAQSEKSKL ESISDRVAKWLFYIALFVGVLAFIGWLMATKDLSLAFERMVTVFIIACPHALGLAIPLVI ARSTSIAAKNGLLLKNRNALEQANKVEYVLLDKTGTLTEGQFTVTGLELMSKQFTREEAL KYIGALEKNANHPLAIGIMNYLNKQAVQPYEAHNLQALSGVGLVATVQNQEVKIVNEKEV ARLQLTFDETIKTNYQEQGNTLSYLIIAGQLVALLALGDKVKPEAKTFIAELQAQGITPV MLTGDNQTAASAVANYLGMKEYYAELLPEDKEKIVQQYLTEGHQVMMVGDGINDAPSLAR ASIGIAIGAGTDVAIDSADVVLTDSDPKDILRFLDLAKQTRRKMIQNLWWGAGYNIVAIP LAAGVLAPIGIVLNPAVGAVLMSLSTIIVAANAMTLHISKK >gi|307679290|gb|GL456437.1| GENE 4 5272 - 6696 371 474 aa, chain + ## HITS:1 COG:no KEGG:EF0876 NR:ns ## KEGG: EF0876 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 473 1 473 474 857 98.0 0 MDFKELLSFEHKNMLELLDLLQQEQTFSVLMAAEKLKVSDKTIHCYIQRFEKKQETFKIE GLCKIYTTTKGIVKYRELCVCGLARFRQKFCYFIPEFYILRCLIEERINYAQLTQVLGLQ ESTLRKKLSNIRRWLVNFDIIVRQKHYDLTGNEWQIRQLILCFYLFFQESCLEENREMTR KIITFFELDLNVAQQNHLSWLIYIWEKRYRGGHEISVPKANLFQQTSAFFYLFRVEVLST SFMSLKEQKALFVILEAHFGGCFGKRARKYFIHEQMKIESLCLKTAIFIMKEIRRNFTQH HFNYQEIHLCRFLSTHMNSLLDGQAWLPAHKQEQTLAARYHQTWHRLQKLIRLLKHLYPV FTSVKERELTSCYFYHILDLFDPILYEKKYIICLLTDFPPEKEQALGQSIKSYFSEKKNI TIIHGKPTYQLHQVHLLIVNHLFQMNVALSSKTVVYLPEELSPAFFEKVEANLP >gi|307679290|gb|GL456437.1| GENE 5 6765 - 7676 1115 303 aa, chain + ## HITS:1 COG:lin0643 KEGG:ns NR:ns ## COG: lin0643 COG4989 # Protein_GI_number: 16799718 # Func_class: R General function prediction only # Function: Predicted oxidoreductase # Organism: Listeria innocua # 1 303 1 305 305 388 60.0 1e-108 MKQLQFGTSDETVSSVILGCMRLNGAENPQQVIETAYDHGITFFDHADIYGGGDCETIFG KALKESTIRREDIFIQTKCGIRQGFFDFSKAHILEAVEGSLQRLGVDSVDALLLHRPDTL VEPEEVAEAFHLLEKQGKVRYFGVSNQTPGQIELLKTAVKQPLLANQLQFGIKHTGMVDQ GLQTNMEISGSIDYDHGILDYSRLKQMTIQAWSPYQYGYFEGVFIGNEKFPELNQKLSEL AEKYQTTPTGLASSWILRHPANMQVIAGSMNLGRIEEIAKAADIVISREDWYDIYRAAGN VLP >gi|307679290|gb|GL456437.1| GENE 6 7864 - 10512 3249 882 aa, chain + ## HITS:1 COG:BS_polA_2 KEGG:ns NR:ns ## COG: BS_polA_2 COG0749 # Protein_GI_number: 16079961 # Func_class: L Replication, recombination and repair # Function: DNA polymerase I - 3'-5' exonuclease and polymerase domains # Organism: Bacillus subtilis # 322 882 1 560 560 640 60.0 0 MTKKKLLLVDGNSVAFRAFFALHNSLERFKNKNGLHTNAIYAFNNMFENVMQKEMPTHVL VAFDAGKTTFRTEFYSEYKAGRSKTPGEFKEQMPYIRELLEGLGVKYYELPNYEADDIIG TLANKVDKDEFDVVVLSGDRDLTQLATDTVKVDITVKGVSDIESYTPEHIAEKYDGLTPK QIIDMKGLAGDTSDNIPGVTKIGEKTAIKLLKQYGSVEGVYENIDEMKKSKMKENLINDK EQAFLSKRLATIEVNAPVEVNVEDLAYEGKNLEKLVPFYKEMDFKQFLAKLDITEEPVEM EDILFEVVEDQLTNEMFTDDMALYVEMMEDNYHTSPIVGLAWGNNKKMYTTNNLAVFESQ PFIDWLMDETRKKNVYDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVAQ HYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHLARKIKAIQFLTSKLDSELTEKNQADLF YKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEFNLNSPKQL GVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYRQIAKIQSTYVEGLLKV IQPDNKIHTRYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYS QIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVY GISDYGLSQNLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLS DINSRNFNLRSFAERTAINTPIQGSAADILKIAMIEMARRLKEEKLQATMLLQVHDELVF EVPESELEQLNQLVKEVMEHAVSLHVPLITDSSWGKTWYEAK >gi|307679290|gb|GL456437.1| GENE 7 10612 - 11454 936 280 aa, chain + ## HITS:1 COG:BH3152 KEGG:ns NR:ns ## COG: BH3152 COG0266 # Protein_GI_number: 15615714 # Func_class: L Replication, recombination and repair # Function: Formamidopyrimidine-DNA glycosylase # Organism: Bacillus halodurans # 1 273 1 274 274 285 52.0 8e-77 MPELPEVETVRKGLEKLVVGKTIQEVIVFWPRIIESPEVDVFQGQLAGQTIEGIERRGKF LIFKLSDNDMISHLRMEGKYEFHQADDEIAKHTHVMFTFTDGTQLRYLDVRKFGRMTLVP KNQGHQYKGILALGPEPTPDVFQLATFQQGLKKHHKAIKPLLLDQKLVTGLGNIYVDEAL WQAQIHPEQPADSLKPAEVATLYQAIIDVLARAVEAGGTTIRTYLNALGEAGTFQIALNV YGQTGLPCNRCGTPIVKTKVAQRGTHYCPQCQQLKGRRLK >gi|307679290|gb|GL456437.1| GENE 8 11451 - 12050 799 199 aa, chain + ## HITS:1 COG:BS_ytaG KEGG:ns NR:ns ## COG: BS_ytaG COG0237 # Protein_GI_number: 16079958 # Func_class: H Coenzyme transport and metabolism # Function: Dephospho-CoA kinase # Organism: Bacillus subtilis # 1 190 1 191 197 171 50.0 8e-43 MTKVLGITGGIATGKSTVVALFKKAGYPIVDGDIIAREIVAKGQPALAAIVETFGPEIVL TTGELDRKKLGQLIFASPQKRELLNETLKPFLRKEILRQIEEAKKKAALVIVDIPLLYEA HYEAIMDQVAVVYVPEKIQKERLMARNQLTEEEAQQRIASQWPIEMKKERADIVFDNQGT REETEQQVKKWLEEQTGKK >gi|307679290|gb|GL456437.1| GENE 9 12230 - 12712 544 160 aa, chain + ## HITS:1 COG:BH3146 KEGG:ns NR:ns ## COG: BH3146 COG1327 # Protein_GI_number: 15615708 # Func_class: K Transcription # Function: Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains # Organism: Bacillus halodurans # 1 150 1 150 153 181 61.0 4e-46 MRCPRCHHNNSRVIDSRQADDGRAIRRRRECENCSYRFTTFERIEAAPLLVIKKNGDREE FNRDKILRGLIRSAEKRPVAMEQMVQIVDNVENRVRSLGENEVSTTLIGEYVMEDLVNLD EIAYIRFASVYRQFKDMSVFLKELQDIVDKAKSSSPDSEN >gi|307679290|gb|GL456437.1| GENE 10 12728 - 14137 1616 469 aa, chain + ## HITS:1 COG:BS_dnaB KEGG:ns NR:ns ## COG: BS_dnaB COG3611 # Protein_GI_number: 16079951 # Func_class: L Replication, recombination and repair # Function: Replication initiation/membrane attachment protein # Organism: Bacillus subtilis # 20 465 20 465 472 120 25.0 6e-27 MKGNRQRIQPKNIFQAVIDSPLSDQEKEVLTFLYQPIVGANAFSLYWLLLSETTDSEENG SLFHADLISLLDLSCQQLEEACYKLEGIGLLETYKKTDRELGDCYLYYLKAPETAARFFK DEVLALVLFNRVGQRKFDQLVQKFQPHPTKTEGYQNVSASFQEVYAFKEEQIVSEANRLT TIQETFSQQEKSKKISVSTDSFDWHYFVEGLHRLGLQLPEDEASFQEEVYVFHQLYGINE LDMVDFASKSFDYYTSRILPKELVRTIHQAFDPDKKPQPTNVVTNKQAQLTVEEQQTYRY NALKMNGFSELDIQMIMDSEKNPPIQYLEALKNSRGGYTTPQERSLVKYLVAKSGLPTSV INILINYVYNIQQQPTLKAEYVNRIANEWGQSGIHSPEKAIEHVRELAKQSQTKQKQRQQ NYSGKRQTVRQERLPEWADQPNDETKLSPEEQAELDRQIQEFLNQGGDQ >gi|307679290|gb|GL456437.1| GENE 11 14137 - 15066 1039 309 aa, chain + ## HITS:1 COG:lin1595 KEGG:ns NR:ns ## COG: lin1595 COG1484 # Protein_GI_number: 16800663 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Listeria innocua # 1 307 1 306 307 273 46.0 3e-73 MEDVGKEMSKIIQKRDINERYEELVNEVLKDQDVQAFIQANRERLSDEDIRKSYAKLYEF VQEKKKFQLNDPAMIAPGYEPRLMLNFHYIDVTYVPTADLIARQKEEEIRNRVRAMDMPK DVREANLRDFDPSSQGRAKALAEAMQFLREYPATPKEFHKGLYLQGPFGVGKSFLLGAMA NALAERGFTTTIVHFPTFTVEMKQAIGRDQVGEKLDAVKKSPILMIDDIGAESMTSWIRD DVLSVILQYRMQEQLVTFFSSNLDLKALEEHLTVTQRGEQEPLKARRIMERVRYLSKEIT MTGNDRRNG >gi|307679290|gb|GL456437.1| GENE 12 15253 - 16356 940 367 aa, chain + ## HITS:1 COG:no KEGG:EF0884 NR:ns ## KEGG: EF0884 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 11 367 1 357 357 650 99.0 0 MFREKSYKVEVEKVNPKIQRLMSTDKQHFLTKHEFHTKETAERKDLLKFFIETRLKTDGG FLTNYLPDAERKDVATGHELLSESSGLYLRNLAFDTQGRFDNFYKQTKDTFYDGVQFSYR IDEQGNKYNVNASIDDLRIIRSLIEAGGHFKTDQYDQEIKKLGKSFMKTSMKDNILIDFY DSKSKQQSSETSLFYIDLITLGYLYKEFGISADYLQYHYQLIDDGYISDDLPLYQTKFNH QTNKYENNGTLNIIESLLTIVHLSEVGMAKQTSIDFVRKQVQQGTLFNSYDLNGSPVDKN QSAASYAIAALIGVAENDKELYRAAITVLNNFQIMDSSSPIYGGFGDKVTKQVYSYNNLM ALLAYDF >gi|307679290|gb|GL456437.1| GENE 13 16370 - 17890 1160 506 aa, chain + ## HITS:1 COG:no KEGG:EF0885 NR:ns ## KEGG: EF0885 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 506 1 506 506 918 99.0 0 MEKIKKYMNSAFEWLSRYISPSLLAVLGIGLVTSILLFVYPINGLGDNGEYFRVLNSNSL YRVNGDSYDNVAYFVKDFSIMRYFNETTTHFVSTQQFFITIAIWLNKLFYSQTLFDIRFL GFVYLSCFLVSIYILVRGLTEGVSLKKSYLISLLVIFILGDTSYTIYFNSFYTEATSFLL SVSVLAFSVYFYRVTKPRTWLRRIVLVILAQAVVLLIGTTRQEYLLIIGVIIAGLGFFVY LSQRYQRLSMTAFLIALIGFTTLAAFIVPNDIYERDVYHSMTRGVMKDSKVPDKRMSEGG INPQYGLQKGRSYFEEYSPVSPTSEQMKKDFFDKTSFGWVLLNYLNYPSELWQGLNSAVP NVYLVKPNNVGNFEKTTGRAPLEQSKFFMVYNRIKASFFPKNFAFYLLLGVILFGLYGVG LYRGLKRNEPRLVFRFFLMTGIYLNLLVVFISTIIIDGDSDLVRHLFLVSVFLDFLLLQI VSDVIGKRMWQDTTPQVIGEVEGIEK >gi|307679290|gb|GL456437.1| GENE 14 17880 - 19463 1367 527 aa, chain + ## HITS:1 COG:lin0532 KEGG:ns NR:ns ## COG: lin0532 COG5298 # Protein_GI_number: 16799607 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 25 521 22 498 499 94 22.0 4e-19 MKNKQYLIGWVCFLLFFVFCGFAKPALAAPSKHVLLVYDSLNIAGKKENDVDALQRVLTS FGVEVQSVAVSDYVPGELLNDGYDSLISMVNWPEQAGVIASDFLADRVHFKGKQLHIGRN MRDDEKQYFSGTWKELSHRQYRLEDEKNRFSQVLPFQDQSVVLENTQGQTVGRLKTQELA PEEYPFGVIENGHAFLPMFERKGAVFLESLDVISQWLESEKMSRPFLTISDFNPLRDMSV ATYLQEELVKTTYPYILSSTSVSQNNTILPYKLFTNALRAFASTGVIFLETPVVNNVDLN DQRALKQLMEQQISLLVDRHVYPVGISAPGYWNQDLQYQEDGLAISDTVILRENPPIERV FYRNQTGESITYKNALFDLPYDYLSGIEWTDKDNPNDYRFPMPTTISFSFPNSKKEVDHL IQEVKEAPIVFSVSEADQHFTVQTQTQKIEFRNNRFFLNNQIVNGLADTGASTVEKQRFT ELFSFFFSITNNILVGVVTLTLIILIILFMIGRKNYRSKYINKEEDK >gi|307679290|gb|GL456437.1| GENE 15 19460 - 20722 1102 420 aa, chain + ## HITS:1 COG:lin0533 KEGG:ns NR:ns ## COG: lin0533 COG1215 # Protein_GI_number: 16799608 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Listeria innocua # 1 419 1 416 416 580 68.0 1e-165 MTIADIVMLTATIIIWSLLIVNILLVIFGYVYYLKTDPVAPPPVEDEDAPFVSIMVPAHN EGIVIVRTVEALLNFNYPQDRYEIIVINDNSSDNSAELLANVQKKAVNRNLQIINTDNIT GGKGKSNALNIGFKQAKGDVIAIYDADNTPEPNALRYLVGELIASEEYGAVIGKFRTRNR NASLLTRFINIETLAFQWMAQAGRFQLFKLCTIPGTNFIVRRSIIEAIGGWDDKALAEDT EISFRIYMMGYKIKFQPKAVTWEQEPQTLSVWFRQRTRWVKGNIYVIVKNAKLLFNPKAS RIRFDILYFLSIYFLLMTSLVLSDIMLVLSMSGYLTTTLQGFSNSLWLLAILLFIFSTFV SITTEKGEMTLENILIIALMYITYSQMWLVVAAYGMVMYIKENVFHKQTQTKWYKTERFK >gi|307679290|gb|GL456437.1| GENE 16 20737 - 20979 220 80 aa, chain + ## HITS:1 COG:no KEGG:EF0888 NR:ns ## KEGG: EF0888 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 80 1 80 688 152 98.0 4e-36 MKQKTVTLIGLFFLAILIGVASPTVYAENKEQDNHTFTQPFQNKTISLTGTSVRSTMYFT KIDYWDVKKASFNMNYQITQ >gi|307679290|gb|GL456437.1| GENE 17 21007 - 22803 1616 598 aa, chain + ## HITS:1 COG:no KEGG:EF0888 NR:ns ## KEGG: EF0888 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 598 91 688 688 1112 99.0 0 MAVNGVKFYSWRPENTTGIQQKTIEIPLELIKETNTLTVEGQIINQAGNDMYNLIETPAN WLTMYEGSNVNFQYDLQLPENTIHSFYNHFVGADTIANKHSVILTPENASEKELAAATHA LAGAARLITTSEELLPMASLNKEQSAPYQLIIASYDKLPDQYKSQIDSKRVEDQAVLKFF NQPDKHVLVATSKDEDLLVRAGRYLANYELMTQTDKEETTVDENTDTFSSTLEFDGNYPL TSTGDKLEGVYHQEQTYFVNLPVDRNNANGSRVHLHFKYAENLDFDSSLVTVYANDKPIG SKKLTAARANGDELNLEFPKNLEIADSFVLKVAFDLNVKSPEVLRNGQTPWAFIENNSNA FIQTEELNDILFNNYPNIFIRSRSFADLAILLPEKMDDNYFKVLTNLFNLIGNYAESNVG EITYYKKAPKNAALENHNLIIFGTPKDNPMIRKLNDQLYFHYDKDFTRFVSNEKLSIEKD YGKQIGTAQLMFSPYNAKAAALILTGAKSQGVFLASTQVNTEKNTSMYKGDAIVVDPNYR RYDYRFKKRVSNVSNESLGKRIVNNHKLMIYLFVFLIGMTIIGLSAFFIVKKNLKGGE >gi|307679290|gb|GL456437.1| GENE 18 22805 - 23239 519 144 aa, chain + ## HITS:1 COG:lin0535 KEGG:ns NR:ns ## COG: lin0535 COG2199 # Protein_GI_number: 16799610 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Listeria innocua # 8 137 8 138 284 67 29.0 9e-12 MNQKRVTLLLDLTLLVGIVLVVGTTIFMALGTNDFFVDLSCLLISVILIIVTYFVGITAG LTFSLIFIFLQLTYVVYQYVYHDLFSYGSLFWLIMPPLYCLTIYAVTYQIRTIEEENIRL RKETSRLNALDAVTNLRTAKMYEE >gi|307679290|gb|GL456437.1| GENE 19 23303 - 23653 419 116 aa, chain + ## HITS:1 COG:no KEGG:EF0889 NR:ns ## KEGG: EF0889 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 116 167 282 282 233 98.0 2e-60 MAYWESIRNLLSPEQKNELLQIVTAAIKETTDDRFLPYFIDGTPPTWALLIFRDGDDGYT TRKEFKQQAQEKFAHSETLRNITLTLQVSYTKYDPAEFNNASEFLGDGINSLQYDV >gi|307679290|gb|GL456437.1| GENE 20 23669 - 23980 367 103 aa, chain + ## HITS:1 COG:no KEGG:EF0890 NR:ns ## KEGG: EF0890 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 103 1 103 103 173 100.0 2e-42 MTEKLAVFTGKLAEAGVLNETQPLSMRLHLENIQAESDPESIVPLFSHGVILNILVEQLE ESIPLSHLKKGTKVRFTVVGLPPMTMSIPPHVGGQAIELIEEI >gi|307679290|gb|GL456437.1| GENE 21 24028 - 25182 1285 384 aa, chain - ## HITS:1 COG:lin2354 KEGG:ns NR:ns ## COG: lin2354 COG0436 # Protein_GI_number: 16801417 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Listeria innocua # 1 383 2 383 383 490 63.0 1e-138 MDRKNIATRYQQPTENLLMDIATLAKKTPNLIDLSIGDPDLITDERIIEQAANDAKNGHT KYTASDGSEAFIEAVIQFYQSHYQLSFQPNQVRATVGALHGMYLALQVILNPGDEVIIHE PYFSPYKDQVLLADGVPVFLPTYEEDGFQIDVALLKEKITPKTKAIILNSPNNPTGAVFS EETFREIAQVAIEHNLYILSDEVYEAFCFQETFTPMATFAPENTITFGSFSKAFAMTGWR IGYMIAPDYINEVAKLINEGVTYSAPTLSQQAGIYALQHFDEFVDPIVEVFQTRLEYVAQ RVAKIPFLSLHPVKGSIYAFINIQKTGLTSVPFVEKLLKETQVLVIPGKAFGETTGDEYI RLAATQNLDLLKEAFDRIERMTFE >gi|307679290|gb|GL456437.1| GENE 22 25198 - 25920 633 240 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 239 1 242 245 248 52 9e-65 MINIKNLQKTFGKNEVLKGIDLEIEAGEVVVIIGPSGSGKSTFLRCLNLLETPTGGSVEF EGKNLLDKNTNIDQLRQKMGMVFQNFNLFPHKNVLENLTISPVKVKKEAASEATEHALSL LEQVGLSDKKENYPSQLSGGQQQRVAIARALAMRPDVMLFDEPTSALDPEMVGEVLSVMK NLAIEGMTMVVVTHEMGFAKEVADRVIFMDAGIIQEEGTPEEIFDAPQNPRTQDFLRKVL >gi|307679290|gb|GL456437.1| GENE 23 25913 - 27376 1704 487 aa, chain - ## HITS:1 COG:lin2352_1 KEGG:ns NR:ns ## COG: lin2352_1 COG0834 # Protein_GI_number: 16801415 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Listeria innocua # 5 271 3 271 271 312 62.0 8e-85 MTKCKKWLQTILPILFLLLSLLPIKETFAAENDPVYDKIIQKGELVVGLSADYAPYEFHA KVDGEDKIVGFDISIAQKIADDLGVKLKIEELGFDALLGALKTGKIDMVISGMSPTPERL KEVAFSQPYMNVQQRVIVRKEDKDKFHSTKDFEGVRAGAQKQTTQEELIKTELTGAVPTS LQKIPDLIMNLKNNKLDAVVMEEPVGEAYVSQNEDLAFADVTFEKGSKDTAVAFPKDAPV LTEKVNASIKQINDQKLMDGYKKEANQLMFQKDQSFLQKYGKFYLNGAGYTIFLAFIGVL FGAILGALLALMKLANSKILRGIAIAYIEYVRGTPLLVQIFIVYFGTGVLGLDLSKVAAG CIALSLNSGAYVAEIIRAGIQAVNKGQLEAARSLGMNQNQAMRYIIFPQAIKNILPALGN EFVTVIKESSVVSVIGVSELIFQAGNVQGASFKPFLPYLIVSLIYFVLTFTISRLLGVAE RRMSTSD >gi|307679290|gb|GL456437.1| GENE 24 27431 - 27550 59 39 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315149655|gb|EFT93671.1| ## NR: gi|315149655|gb|EFT93671.1| alcohol dehydrogenase [Enterococcus faecalis TX0012] # 1 39 1 39 407 70 82.0 3e-11 MYKNLLCYDVVYHIIEYVKGKVVELKKYNFFKKNFKSQK >gi|307679290|gb|GL456437.1| GENE 25 27565 - 28653 1188 362 aa, chain + ## HITS:1 COG:lin1848 KEGG:ns NR:ns ## COG: lin1848 COG0371 # Protein_GI_number: 16800915 # Func_class: C Energy production and conversion # Function: Glycerol dehydrogenase and related enzymes # Organism: Listeria innocua # 1 362 2 364 368 404 54.0 1e-112 MEQSLIVRGTPQEYLCKIGSWELLEGQLLCRNIHRVFILHGTESWQAAKPYFPTFQKVTA VFENYGGVCTDQRVQKLEAQVLDNHLEAIVAVGGGKVADLGKALAHKMALPVIILPTLAA TCAPCTPLSVMYREDGAMERYDVFPQANALVLVEPRVLLHSPRSLMVAGIGDTLAKWYEA DAIISQLDVQVLPIQVSHFAAEKCRDILLNESINALKAMEEQQLNQSFIDVIETNLIIGG MVGGFGDDYGRTAGAHSIHDALTLLPASHRQLHGNKVAYGVFVQLAIEEKWQEIDELIPF YHQLGLPISLKEMEMDLTEAEYQEVAERACIEGETIHYMKQKITPEIVKTAMQDLEKYTA TK >gi|307679290|gb|GL456437.1| GENE 26 28812 - 29957 1273 381 aa, chain + ## HITS:1 COG:SP2058 KEGG:ns NR:ns ## COG: SP2058 COG0343 # Protein_GI_number: 15901878 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Queuine/archaeosine tRNA-ribosyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 376 1 376 380 682 83.0 0 MTEPAIRYRLIKKDKHTGARLGELITPHGTFPTPMFMPVGTLATVKTMSPEELKEMGAGV ILSNTYHLWLRPGEDLVEEAGGLHKFMNWDQPILTDSGGFQVFSLSDMRKIEEEGVHFRN HLNGSKMFLSPEKAINIQNKLGSDIMMSFDECPPFDESYEYVKRSIERTSRWAERGLKAH ANPDRQGLFGIVQGAGFEDLRRQSAKDLVSMDFPGYSIGGLSVGESKEEMNRVLDFTTPL IPENKPRYLMGVGAPDSLIDGVIRGIDMFDCVLPTRIARNGTCMTSQGRLVVKNAQYARD FRPLDEKCDCYVCRNYTRAYIRHLIKCDETFGIRLTSYHNLYFLLDLMKNVRQAIMDDNL LEFRQAFFEEYGFNKANAKSF >gi|307679290|gb|GL456437.1| GENE 27 30039 - 30416 582 125 aa, chain + ## HITS:1 COG:L184708 KEGG:ns NR:ns ## COG: L184708 COG1862 # Protein_GI_number: 15674113 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YajC # Organism: Lactococcus lactis # 4 114 3 106 110 76 52.0 1e-14 MGGGFTMIFTLVLLGGMMFFMTRSQKKQQQERQKQLNAMKTGDSVVTIGGLHGVLSEINE KTVLIDCEGIVLEFDRAAIRTVTPGTAVTNDSAVTSVPVTEVEETVTEEVTEVPETSDPS KEKKD >gi|307679290|gb|GL456437.1| GENE 28 30696 - 30983 316 95 aa, chain + ## HITS:1 COG:no KEGG:EF0899 NR:ns ## KEGG: EF0899 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 95 1 95 95 155 96.0 4e-37 MTKEKLSWLQQKMLNKSIKKKCQNFRELGYSSINEEDLLTYLLTYRWKKQARLSVKDCRK DIQKVKPNEFFDYQQLLAQTSKNPLRDWHDIEDLF >gi|307679290|gb|GL456437.1| GENE 29 31006 - 31080 66 24 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDKKIINSCEKYHKNYLQDSFYVV >gi|307679290|gb|GL456437.1| GENE 30 31139 - 33736 2913 865 aa, chain + ## HITS:1 COG:SA0143_2 KEGG:ns NR:ns ## COG: SA0143_2 COG1454 # Protein_GI_number: 15925852 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Staphylococcus aureus N315 # 457 863 1 407 411 650 76.0 0 MVKTVKKEKTETVDVSSMIDELATKANVALKAMEDFTQEQVDHIVHQMAMAALDQHMPLA KMAVEETGRGIYEDKAIKNMYASEYIWNNIKHDKTVGVINKDEQTGLMEIAEPVGVVCGV TPTTNPTSTTIFKSLIAIKTRNPIVFAFHPSAQKCSAEAARIVRDAAIAAGAPENCIQWI EQPSIDATSALMNHPGIAIVLATGGAGMVKSAYSTGKPALGVGPGNVPAYIEKTAKVKRA VNDLIVSKSFDNGMICASEQAVIVDKEIYASVKAEFEAHNVYFVKPNELQKLEDAVMNEG KYAVNPAIVGNSAEKIAELAGISVPKGTKILVAELEGAGPEYPLSREKLSPVLAMMKSNN AEHAFELCEAMLNLGGLGHTAVIHTEDEELQVAFGLRMKACRILVNTPSAEGGIGNIYNE MIPSLTLGCGSYGKNSVSKNVSAINLINIKTVAKRRNNMQWFKLPPKIFFEKNSLQYLQK MENVERVMLVCDPGMVQFGYADIVRKELQKRKNDVKIEVFSDVEPNPSTNTVYAGTKMMV DFQPDTVIALGGGSAMDAAKGMWMFYEHPDTEFFGAKQKFLDIRKRTYKIAKPEKTQFVC IPTTSGTGSEVTPFAVITDSETHVKYPLADYALTPDVAIVDPQFVMSVPASVTADTGMDV LTHAIESYVSVMASDYTRGLSLQAIKLVFDHLENSVKRPDMESREKMHNASTMAGMAFAN AFLGICHSIAHKIGGEYGIPHGRTNAILLPHIIRYNAKDPSKHAMFPKYDYFRADTDYAD IAKFLGLKGNTTAELVEALATAVADLGKSVGIDMNLKAQGVSQETLDTTVDRMAELAYED QCTTANPKEPLISELKQIILDAYVG >gi|307679290|gb|GL456437.1| GENE 31 33781 - 34824 1078 347 aa, chain - ## HITS:1 COG:SA2136 KEGG:ns NR:ns ## COG: SA2136 COG1304 # Protein_GI_number: 15927926 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Staphylococcus aureus N315 # 3 340 9 345 349 318 45.0 8e-87 MNRKDEHLSLAKAFHKEKSNDFDRVRFVHQSFAESAVNEVDISTSFLSFQLPQPFYVNAM TGGSQRAKEINQQLGIIAKETGLLVATGSVSAALKDASLADTYQIMRKENPDGLIFANIG AGLGVEEAKRALDLFQANALQIHVNVPQELVMPEGDRDFTNWLTKIEAIVQAVEVPVIVK EVGFGMSQETLEKLTSIGVQAADVSGQGGTSFTQIENARRKKRELSFLDDWGQSTVLSLL ESQNWQKKLTILGSGGVRNSLDIVKGLALGAKSMGVAGTILASLMSKNGLENTLALVQQW QEEVKMLYTLLGKKTTEELTSTALILDPVLVNWCHNRGIDSTVFAKR >gi|307679290|gb|GL456437.1| GENE 32 34808 - 35914 1159 368 aa, chain - ## HITS:1 COG:SA0549 KEGG:ns NR:ns ## COG: SA0549 COG1577 # Protein_GI_number: 15926270 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Staphylococcus aureus N315 # 1 357 1 358 358 320 44.0 4e-87 MIEVTTPGKLFIAGEYAVVEPGHPAIIVAVDQFVTVTVEETTDEGSIQSAQYSSLPIRWT RRNGELVLDIRENPFHYVLAAIHLTEKYAQEQNKELSFYHLKVTSELDSSNGRKYGLGSS GAVTVGTVKALNIFYDLGLENEEIFKLSALAHLAVQGNGSCGDIAASCYGGWIAFSTFDH DWVNQKVATETLTDLLAMDWPELMIFPLKVPKQLRLLIGWTGSPASTSDLVDRVHQSKEE KQAAYEQFLMKSRLCVETMINGFNTGKISVIQKQITKNRQLLAELSSLTGVVIETEALKN LCDLAESYTGAAKSSGAGGGDCGIVIFRQKSGILPLMTAWEKDGITPLPLHVYTYGQKEC KEKHESKR >gi|307679290|gb|GL456437.1| GENE 33 35917 - 36912 1112 331 aa, chain - ## HITS:1 COG:SA0548 KEGG:ns NR:ns ## COG: SA0548 COG3407 # Protein_GI_number: 15926269 # Func_class: I Lipid transport and metabolism # Function: Mevalonate pyrophosphate decarboxylase # Organism: Staphylococcus aureus N315 # 3 325 4 327 327 350 57.0 2e-96 MLSGKARAHTNIALIKYWGKANEEYILPMNSSLSLTLDAFYTETTVTFDAHYSEDVFILD GILQNEKQTKKVKEFLNLVRQQADCTWFAKVESQNFVPTAAGLASSASGLAALAGACNVA LGLNLSAKDLSRLARRGSGSACRSIFGGFAQWNKGHSDETSFAENIPANNWENELAMLFI LINDGEKDVSSRDGMKRTVETSSFYQGWLDNVEKDLSQVHEAIKTKDFPRLGEIIEANGL RMHGTTLGAVPPFTYWSPGSLQAMALVRQARAKGIPCYFTMDAGPNVKVLVEKKNLEALK TFLSEHFSKEQLVPAFAGPGIELFETKGMDK >gi|307679290|gb|GL456437.1| GENE 34 36912 - 37856 904 314 aa, chain - ## HITS:1 COG:lin0010 KEGG:ns NR:ns ## COG: lin0010 COG1577 # Protein_GI_number: 16799089 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Listeria innocua # 9 307 4 301 322 211 42.0 2e-54 MNIKKQGLGQATGKIILMGEHAVVYGEPAIAFPFQATEITAVFTPAKTMQIDCAYFTGLL EDVPQELANIKEVVQQTLHFLKEDTFKGTLTLTSTIPAERGMGSSAATAVAIVRSLFDYF DYAYTYQELFELVSLSEKIAHGNPSGIDAAATSGADPLFFTRGFPPTHFSMNLSNAYLVV ADTGIKGQTREAVKDIAQLAQNNPTAIAETMKQLGSFTKEAKQAILQDDKQKLGQLMTLA QDQLQQLIVSNDMLDRLVALSLEHGALGAKLTGGGRGGCMIALTDNKKTAQTIAQTLEEN GAVATWIQSLEVKK >gi|307679290|gb|GL456437.1| GENE 35 38125 - 38760 463 211 aa, chain - ## HITS:1 COG:BS_yisX KEGG:ns NR:ns ## COG: BS_yisX COG1357 # Protein_GI_number: 16078153 # Func_class: S Function unknown # Function: Uncharacterized low-complexity proteins # Organism: Bacillus subtilis # 9 210 9 211 212 114 29.0 1e-25 MKITYPLPPNLPEQLPLLTNCQLEDEAILENHLYQQIDLSNQEIRNLVFRDAVFDHLSLA NGQFASFDCSNVRFEACDFSNVEWLSGSFHRVTFLRCNLTGTNFADSYLKDCLFEDCKAD YASFRFANFNLVHFNQTRLVESEFFEVTWKKLLLEACDLTESNWLNTSLKGLDFSQNTFE RLTFSPNYLSGLKVTPEQAIYLASALGLVIT >gi|307679290|gb|GL456437.1| GENE 36 38757 - 39830 986 357 aa, chain - ## HITS:1 COG:Cj0557c KEGG:ns NR:ns ## COG: Cj0557c COG1289 # Protein_GI_number: 15791918 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Campylobacter jejuni # 20 329 28 337 361 113 28.0 6e-25 MKNSTFLKDLFAIDKANDELFRLVGVAICMAIPLLIGYFSNNLLIGTFGSMGIYTFIYYQ PLPLPQLLRRLNIVGFFIVLGNSLGMLSHHVPWLIPITIAIVAFLARLLFRLYGIEKPGA LLVIMSTAMGTSNNFPLHKIPIMASFVLLGVVTGIIMGIVLHFIDKRPYVFQKRMSLQER LYIDPASLLDALHYAAILFLAAYLSQSLHLVNAYWMTFTCAAILQGENLHSVMQRNVQRI LGTSLGLLLSAILLMIPFTPLQTIGIISILYAAFEGFINRNYAIASFFITPMSLLLSNLA RQQVISNLLNYRLVGIVLGSLLGFAGAYVFTTALRFYNRAYSIDETFENQQEERGVL >gi|307679290|gb|GL456437.1| GENE 37 40074 - 41744 1996 556 aa, chain + ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 22 556 22 559 559 442 44.0 1e-124 MKLKKSLTFGVITLFSVTTLAACGGGGTSDSSSASGGGKASGEQVLRVTEQQEMPTADLS LATDRISFIALNNVYEGIYRLDKDNKVQPAGAAEKAEVSEDGLTYKIKLNKDAKWSDGKP VTANDYVYGWQRTVDPATASEYAYLYASVKNGDAIAKGEKDKSELGIKAVSDTELEITLE KATPYFDYLLAFPSFFPQRQDIVEKYGKNYASNSESAVYNGPFVLDGFDGPGTDTKWSFK KNDQYWDKDTVKLDSVDVNVVKESPTALNLFQDGQTDDVVLSGELAQQMANDPAFVSQKE ASTQYMELNQRDEKSPFRNANLRKAISYSIDRKALVESILGDGSIEPNGLVPADMAKDPS GGKDFAKEAGSQIEYDTKKAKEYWEKAKKELGISTLTMDILSSDADSSKKTVEFVQGSIQ DALDGVKVTVSPVPFSVRLDRSNKGDFDAVIGGWSADYADPSSFLDLFASDNSYNRGRYN NPEFDKFVKAASSADATDPEKRWDDMLNAEKTIMGDMGVVPLFQKSEAHLRAEKVKDVAV HPAGATYDYKWAYISE >gi|307679290|gb|GL456437.1| GENE 38 41823 - 42173 305 116 aa, chain - ## HITS:1 COG:no KEGG:EF0908 NR:ns ## KEGG: EF0908 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 116 1 116 116 169 99.0 4e-41 MKTFKWPIITAVISSIGIFLYLLISKEPITTSSLSDTFFIVSLFFLIIGIALWIMSSGFF DNFQRSMKNAFRFKKKNEPKEFIPLSVIGDAHRSFWLKTGGILLILSLGFLLFYLV >gi|307679290|gb|GL456437.1| GENE 39 42264 - 43205 244 313 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 [Haemophilus parasuis 29755] # 9 303 6 310 320 98 25 1e-19 MNSFGKYFLKRIFFMIITLWLIATITFFLMQLLPGTPYTNQEKLSPETIAMLNKQSGLDK PVIVQYGIYLKNLVTGDFGISFQFKNQPVAKLLAGRIGPSLQLGGQAIIFGTLVGILLGI IAAMRQNTWVDTLATLLAILGRSIPNFVFAVLLQYIFAMKLRILPIAMWNGFAYTILPTI ALAMSPMADSARFIRTEMVEVLHSDYVELAKAKGLSRWQVAFRHGLRNSLIPLITLLGPL AVGLMTGSLVVENIFAIPGIGEQFVKSIMTNDYPTIMAVTILYSTMLVVVILIVDLLYGL IDPRIRVSGGAKG >gi|307679290|gb|GL456437.1| GENE 40 43205 - 44257 1119 350 aa, chain + ## HITS:1 COG:lin2298 KEGG:ns NR:ns ## COG: lin2298 COG1173 # Protein_GI_number: 16801362 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Listeria innocua # 16 350 6 344 344 353 55.0 3e-97 METVNKNNLPQAIKDIPADEFQPLNTSTLKERERIATPSLSFLQDSWRRLKKNKAAVISM SFLAVIIFISIITIWVSPHNPTKQNVSYINLPPRIPGLESVNGLNGKTTVAGQLVDKYAQ ANVPDNVNFYLGTDGLGRDVLSRLFMGTRISLLIAFIAAILDITIGVTYGLISGLVGGRV DTVMQRILEVLSGIPNLVVMILMLTVFDPGIVSIVLAMVITNWISMARIVRAQTMKLKDQ EFVMAAETLGESRWKIAIKHILPNISSVIIVQMMFSIPSAIFFEAFLSFIGLGLRPPTAS LGTLLNEGYKTFRFLPYLMWIPAATLSVIMICFNLLADGLRDAFDPKMKE >gi|307679290|gb|GL456437.1| GENE 41 44273 - 45325 1407 350 aa, chain + ## HITS:1 COG:lin2297 KEGG:ns NR:ns ## COG: lin2297 COG0444 # Protein_GI_number: 16801361 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component # Organism: Listeria innocua # 1 341 1 342 358 499 72.0 1e-141 MEKVLEVKDLRISFDTFAGKVNAIRGVSFDLYKGETLAIVGESGSGKSVTTRSIMRLLSS NANIDNGEILFKGQDIVHKTEKQMQAIRGKEIAMIFQDPMTSLDPTMPIGKQVAESLIKH NKVSKKEGLAQALELLKLVGIPNAEKRLKNYPHQFSGGQRQRIVIAIALICYPEVLIADE PTTALDVTIQAQILELLKDLQEKISTSIIFITHDLGVVANVADRVAVMYGGRLVEVGTAE EIFYNPQHPYTWGLLGSMPTMEGTEDKLYAIPGSPPDLLDPPTGDAFYPRNEFALKIDTE KEPPYFEVSPTHKAATWLLAPQAPKVTPPAEIVRRWAIYAERQKNPGGSN >gi|307679290|gb|GL456437.1| GENE 42 45325 - 46281 1338 318 aa, chain + ## HITS:1 COG:lin2296 KEGG:ns NR:ns ## COG: lin2296 COG4608 # Protein_GI_number: 16801360 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, ATPase component # Organism: Listeria innocua # 1 308 1 311 322 429 68.0 1e-120 MAEEKKVLLEVTGLKQYFNVGRKDEVKAIDDISFHIYEGETFGLVGESGSGKSTTGRSVI RLYDPTAGEILFDGKDISKIKSKADMQAFRRDVQMIFQDPYASLNPRMKVNDIIAEGIDV NGLAKTPKEREEKVNELLKTVGLNPSHSTRYPHEFSGGQRQRIGIARALAVNPRFIICDE PISALDVSIQAQVVNLLQDLQKEQGLTYLFIAHDLSMVKHISDRIGVMHSGKLLEMGTSD DVYNFGVHPYTESLLSAIPLPDPDYERTRKRIVYQPAAADGKDRELREILNGHYVYCAED EVAMYREKIEEKKRKAGL >gi|307679290|gb|GL456437.1| GENE 43 46322 - 47392 662 356 aa, chain + ## HITS:1 COG:DR1593 KEGG:ns NR:ns ## COG: DR1593 COG0675 # Protein_GI_number: 15806601 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Deinococcus radiodurans # 5 314 5 316 408 145 34.0 2e-34 MKALKAYKYRLYPTSKQEEFIQKTFSCVRLVYNLMLQDRIDIYKEMRKNPQQTFKMPTPA KYKKQYPVLREVDSLALANAQVYLDRAFKNFYREKGMGFPKKKKKETVHSYTTNNQHGTV KILDNRYLKVPKLKSLIKMKVHRQPLGEIKSVTISMSASHNYYVSILCEAPVETKTKQQK MVGICSSREKFALLSNGESFEKSYCSKHLKQKLRQEERKLNKRKMIALEKGFDLSQAKNY QKQKIKVAKIREKIANQRTDILNKITTELVSSYDVICIEKAHHCNERPPKHDRSELAWSL FLAKLLYKAQWYGKELICIESEEIETELSFSESTENSEYLRSKKILERGLSKRETL >gi|307679290|gb|GL456437.1| GENE 44 47791 - 48312 426 173 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 [Vibrio campbellii AND4] # 9 170 1 164 166 168 50 9e-41 MTIAKDMMVNDGIRARELRLIGQDGEQLGVKTKAEALQIAESANLDLVLVAPGAKPPVAR IMDYGKFRFEQQKKEREARKKQKVINVKEVRLSPTIDVNDFNTKLRNARKFLEKGDKVKA SIRFKGRAITHKEIGQKVLDRLAEETADIATVEQKAKMDGRSMFLTLAPKNDK >gi|307679290|gb|GL456437.1| GENE 45 48426 - 48626 340 66 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375499|ref|NP_814653.1| 50S ribosomal protein L35 [Enterococcus faecalis V583] # 1 66 1 66 66 135 100 8e-31 MPKQKTHRGLAKRVKRTGGGGLKRGRAFTSHRFHGKTKKQRRQLRKASMVAKGDYKRIRQ QLARMK >gi|307679290|gb|GL456437.1| GENE 46 48687 - 49046 595 119 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375500|ref|NP_814654.1| 50S ribosomal protein L20 [Enterococcus faecalis V583] # 1 119 1 119 119 233 100 2e-60 MARVKGGTVTRKRRKKVLKLAKGYYGSKHTLFKSAKEQVMNSYYYAFRDRRQKKRDFRKL WIARINAAARMNGLSYSKLMHGLKLAEIDINRKMLADLAVNDAAAFTALAEQAKDALSK >gi|307679290|gb|GL456437.1| GENE 47 49093 - 49443 613 116 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238856926|ref|ZP_04647185.1| 30S ribosomal protein S8 [Enterococcus faecalis TUSoD Ef11] # 1 116 1 116 116 240 99 2e-62 MTFQETISAYIQERYQITPDFPFKKHPDYLVFRHPRNAKWFALIMPLDAQLLGATENKQL TILTVKLAPELIALLKNQPGYFPAYHMNKEHWLSLSEEIPLSQVFSFIDESYQRSY >gi|307679290|gb|GL456437.1| GENE 48 49541 - 49900 502 119 aa, chain + ## HITS:1 COG:L101688 KEGG:ns NR:ns ## COG: L101688 COG3759 # Protein_GI_number: 15673453 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 1 116 1 116 119 124 71.0 6e-29 MTLISTILVTLVAVEFFYIMYLETIVPTSETTSRVFKMDKQELQRKSVTTLFKNQGIYNG LIGAGLIYSVYFAQATMEMTKFLLIYIILVAAYGSLTSDKKIILTQGGLAIVALISLLI >gi|307679290|gb|GL456437.1| GENE 49 50028 - 50462 600 144 aa, chain + ## HITS:1 COG:lin1092 KEGG:ns NR:ns ## COG: lin1092 COG0454 # Protein_GI_number: 16800161 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Listeria innocua # 1 142 2 142 150 108 40.0 4e-24 MLNQKEVKKTDYPQLISLWRSSVEATHLFLSQADIDKIEVVLPDYFQQVQLSMWLNEEQK CVGFSGTNQQTLEMLFIDPVYFRKGYGGEIIKKLIEQESIVFVDANKQNEGAVKFYQSQG FQVIGESKEDPQGNPFPILHMKRI >gi|307679290|gb|GL456437.1| GENE 50 50480 - 50995 181 171 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148360238|ref|YP_001251445.1| nucleotidyltransferase PLUS glutamate rich protein GrpB PLUS ribosomal protein alanine acetyltransferase [Legionella pneumophila str. Corby] # 3 160 175 337 601 74 30 2e-12 MRVIVTEYQPAWVEQFEEEAQALKQILKENCLKVEHIGSTSVPNLAAKPIIDFLVIVEEI EKVDLLQGEFERIGYEYMGEFGLSGRRYLRKGPIKRTHHVHIYQFDNTQEILRHLAFRNY LRENLAIATTYGTLKKQLAQAHPDSIDKYMDGKDAFIKKIEKEVLKKYWEK >gi|307679290|gb|GL456437.1| GENE 51 51011 - 52186 1111 391 aa, chain - ## HITS:1 COG:PA2563 KEGG:ns NR:ns ## COG: PA2563 COG0659 # Protein_GI_number: 15597759 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfate permease and related transporters (MFS superfamily) # Organism: Pseudomonas aeruginosa # 7 380 6 382 495 342 49.0 7e-94 MLFSIKKSEWLGNERNDLFAGLVSSVAILPEVIGFAIIAGVHPLSAVFASAVTLLVITFT GGRPAMVSASAGSMALVLAGLIQAHGLSYMLAATILTGFLQFILGYLGIHKLMRFIPKTV MYGFVNALAILIFMAQVQQLPHQTLWSYGMIICSILLIYLLPKFITIVPPALIVILFMTI LSYFLKGHLQTVGDLGEMSQFHPAIRWPNVPVNLETLRIILPSSVALAMVGLIESLLTIP IVDKMTASQSDSQREVKAQGLANIITGFFGGQAGCAMIGQAVINVKSGGRKRLSTLISGI TLLLFIFVFKSVMVAIPTAALIGIMMTVAVDTFDWESLQLFRTFEITEIVILLVTVGVIV YTHNLAIGIILGVLLSGLLYHFFKKEPKKSC >gi|307679290|gb|GL456437.1| GENE 52 52416 - 53444 897 342 aa, chain - ## HITS:1 COG:L178384 KEGG:ns NR:ns ## COG: L178384 COG2855 # Protein_GI_number: 15672357 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 15 331 3 320 331 281 56.0 1e-75 MKNSENDYIQSLFQILPGLLTAFLVACLSKFLAIWLPSLGAATIAILLGIFLGNTFVRGA NLNRGTKVAESKLLEFSVILLGTTVTFQTIAQIGLQGVAFILIQMSLTIIFAYLIGKKLA FSDNMSLLMAGGNAVCGSSAIASIAPAIQADEEEKGQIITLVNLLGTVLMLTLPILSGIL YGTNLLARSALIGGTLQSVGQVVASANMVNENAVQLAMLFKIMRIVLLVAVVYLFGRFKQ SKTAESEAELVEVTKKSSALPWYVVGFFIACVFNSLIHFPVVISDTAHFFSSWFEITALA AIGLRLDFKKFFQEGKRFLIYGLSVGTVQVVLAILLLALLQF >gi|307679290|gb|GL456437.1| GENE 53 53551 - 54387 698 278 aa, chain + ## HITS:1 COG:L0220 KEGG:ns NR:ns ## COG: L0220 COG0583 # Protein_GI_number: 15672356 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 3 267 1 266 272 191 40.0 1e-48 MPMFKLLKTFQIVYEQMNFSKAATCLYISQPAVSNQIKQLEEELGCSLFLRNGRQDVVPT RQAEVLYNRLLNLADDWQETLTALHQARLPKETCRIAASNTFAVYYLPQLMQHLQTQYAT INFVLEMNNSEEVVEKVEKHQVDFGFIEKPLITKGASREEIIQDQLVLAGDPANQNWLVR EKDSGVFHYTQQYLEESNQSPTLMTVKNNEMIVKMLELGMGQSLLSRKAITEKIPFQTLG EKYWRSFYFLTRGHLKSSLLQEVKQAIYRFYQTEMNKY >gi|307679290|gb|GL456437.1| GENE 54 54452 - 55324 831 290 aa, chain + ## HITS:1 COG:CAC3467 KEGG:ns NR:ns ## COG: CAC3467 COG3865 # Protein_GI_number: 15896706 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 288 1 294 294 167 32.0 2e-41 MPKFSPCLWFDTQAEEAANFYTTIFEKGAILSKTNYVNEEHQPQGTSLMTIEFTLANQTI IGLNGGPEFSFTPASSFFVECKTLSQTETLWKNLTTDGQILMPFGEYPFSPLYGWVVDKF GVSWQVSFSGKEQTIVPTFMFANEKYGEAAKALSEWLAIFGPGEIIEKVEYEDGTIAQAL FTLQEQPFRVMDARDKHDFDFTMAFSIYIDCENQEEIDRLWQQVTAKGKEWPCGWMEDQF EVSWQTGNPELKRYLSDSNPARANEVTKKLYQMKKIDLNQLKEVYDKYNH >gi|307679290|gb|GL456437.1| GENE 55 55596 - 55820 300 74 aa, chain + ## HITS:1 COG:no KEGG:EF0925 NR:ns ## KEGG: EF0925 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 74 1 74 74 96 98.0 4e-19 MIELIVLLTVFTYGTNFVLYLILKNKKSMPIVEKASIVLGINMSVLLLDGIFAFVGKFIM LSEWELLAPIFEMV >gi|307679290|gb|GL456437.1| GENE 56 55909 - 56583 792 224 aa, chain + ## HITS:1 COG:CAC0224 KEGG:ns NR:ns ## COG: CAC0224 COG0745 # Protein_GI_number: 15893516 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 1 223 1 222 223 246 52.0 2e-65 MAKIMIVEDETTIRELISEELQKWQFETIGTTDFNDVLDDFQEENPQLVLMDINLPVYDG YYWCQKIREVSKVPIIFISSRSTNMDMIMAMNMGADDFVTKPFQIDVLIAKINALLRRSY NYSDTDSEVLSHNGITLNVDNGRMEIKGEMIDLSKNEYRLLYLLMKKHGKILTREKLLRA LWDDERFVDDNTLTVNINRLRKKIEQAGIAGYIETKVGVGYMVP >gi|307679290|gb|GL456437.1| GENE 57 56597 - 57622 882 341 aa, chain + ## HITS:1 COG:CAC0225 KEGG:ns NR:ns ## COG: CAC0225 COG0642 # Protein_GI_number: 15893517 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 1 340 1 336 339 201 33.0 2e-51 MTILKYLKDRWLLLIGWLFFLFLTCFILWLAPNVRLDWTVVGYIFLLQSVFLSLFLTIDY YLKRKWWLSLATEKEPPSLQEYLNTAEKEEELLVQTYINGLLQEHQQTMQQAINNQQDQK DYIDSWVHEIKVPLAAITLLVQSVEDDIPEKKYYLLENELGKIDEYVEQVLYYARLDSFS RDYLLQEYSLKEIVQSVVRTQANYFIQKRLQFSIEGEDEAVLTDRKWVIFIFRQLLSNAV KYTPEGGTITVLISKNKQGIYLSLKDSGIGIPTQDQRRIFDKGFTGENGRKSEQHSTGLG LYLAHSLAKKLGHDLTVESTEGQGTTMTLFFPSLSYYNEVK >gi|307679290|gb|GL456437.1| GENE 58 57770 - 58633 1012 287 aa, chain + ## HITS:1 COG:SPy2205 KEGG:ns NR:ns ## COG: SPy2205 COG4975 # Protein_GI_number: 15675938 # Func_class: G Carbohydrate transport and metabolism # Function: Putative glucose uptake permease # Organism: Streptococcus pyogenes M1 GAS # 10 287 1 277 277 233 49.0 3e-61 MSLLIALVPMIAWGSIGLVSGKIGGSANQQTLGMTIGALLFSIVVFFVIQPTLTTATLIV GFISGLFWSLGQNQQFHSMKYMGVSVGLPISTGMQLVVNTVAGAVFFHEWTKTKDFVVGF IALAFLVFGVYLTARQDDDSQPKTSNSMLDFNKGIRALIFSTVGYGVYTIIINATGLDPW GIILPQSIGMLVGASFFAFKKVKVDRFVWMNMTTGLLWGLGNICMLLTMREIGLAISFSL SQMGIIISTLGGIFLLGERKSKKEMFYVIFGCIFVILGGILLGYMKA >gi|307679290|gb|GL456437.1| GENE 59 58674 - 60065 1441 463 aa, chain + ## HITS:1 COG:lin0648 KEGG:ns NR:ns ## COG: lin0648 COG0531 # Protein_GI_number: 16799723 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Listeria innocua # 2 455 3 458 463 422 50.0 1e-118 MSIFRKKEITVPVNDSGGMKKNLKTMDLIFLGIGAVVGTGIFVVTGVAAERYAGPGLVLS FLVAAAAIILSGLCYAEFASRIPVIGGPYAYMYVVFGEIVAWMTGWMIICEFFLAVSSVA SGWSGYVHGFLDSLGFSLPQALSGAYNPTNGTYIDLIAMLIVVAVTFWVSLEAKTALRLN NLMVFVKFGIILLFVLVGIFYVKPTNWQPFIPYGFSGVFSGAALVFFAFLGFDAVSMAAE EVKNPKKDIPKGIIGSIIISTLLYIVVTLVLTGIVPFTDLGVKDPVAFAMRFINHGAIAT IISVGAILTLLTVTIAMMYSLARVIYAISKDGLLPQFMSKIDEKRHTPKNATYVAGFLAM VFAGIVPMEMLAELTNIVTLFYLMFLALGIIKLRTMKGEPQAGEFKVPLVPVLPLISIVV CAALMFQLSLATWQVFGIAVVIGLAIYFFYGRHHSIVRFETKE >gi|307679290|gb|GL456437.1| GENE 60 60253 - 62262 2392 669 aa, chain + ## HITS:1 COG:lin0216_1 KEGG:ns NR:ns ## COG: lin0216_1 COG0143 # Protein_GI_number: 16799293 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA synthetase # Organism: Listeria innocua # 3 544 4 547 549 808 71.0 0 MSQKETFYITTPIYYPSGKLHIGNSYTTIACDAMARYKRLMGFDVFYLTGVDEHGQKIEK KAAELNVTPKEYVDKMAADVQKLWKTLDISYDKFIRTTDDYHMAAVQQIFDRLVEQGDIY LGEYEGWYSVSDEEFFTETQLAEVYRDDEGNVIGGKAPSGHEVELVKEESYFFRMSKYAD RLVQYYEEHPEFIQPESRKNEMLNNFIKPGLEDLAVSRTTFSWGIPLKNDPKHVVYVWID ALSNYITALGYGSEDDSLFQKYWPANVQMVGKEIVRFHTIYWPIMLMALDLPLPKKVFGH GWLLMKDGKMSKSKGNVVYPEMLVERYGLDALRYYLLRAIPFGSDGVFTPEDFVSRLNYD LANDLGNLLNRTIAMINKYCDGKVPAYASKVTPFDSELSTTAANVIGKYHEAMEKMEFNT AIAEIWTLVSRANKYIDETAPWVLAKEEEKRNELESVMIHLAESLRIVAILLQPVMTETP GKIFEQLGLDPETMNMENIHFGEFPTDVTVTSKGTPIFPRLEIETEVTYIQKKMSQSESA TEEDIKWNPEETTLVSTKEKQIKYDDFDKVELKVAEVIDCKKVKGADKLLQFRLDAGDEN HRQILSGIAEFYPDPAALIGKKVVIVANLKPRKMRGQISQGMILSAESPEGKLQIVEAPK EMPNGAGIA >gi|307679290|gb|GL456437.1| GENE 61 62362 - 62637 104 91 aa, chain + ## HITS:1 COG:no KEGG:EF0931 NR:ns ## KEGG: EF0931 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 91 1 91 91 124 100.0 1e-27 MAYHKFKFYEQRKNDPKWRPYYLEAMRVREQARLTVQRRKRRARIRTFLVVAILVILVFL LLAHWTYSQTNELSFSSFIDVLKSKINEFLN >gi|307679290|gb|GL456437.1| GENE 62 62696 - 63301 464 201 aa, chain - ## HITS:1 COG:no KEGG:EF0932 NR:ns ## KEGG: EF0932 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 201 1 201 201 303 97.0 3e-81 MKQSPDLENFLKTSIQKNVTIERKQQNQTIWHWLLLILFGLLNFGSLTQQLLLIGLFTLI AAIVKGPLMLVWGTIYSALVALFPPFALVLSLLFFIINLDTVMKSWRITLTSAYFYLIPL GFSLLKTTDWVSTPYFLTGLALLSILGLHFILEWLYKNNSLGRLLTWQIISVPFSLLLII LPSRLTKGRFGKKRIPKKVKL >gi|307679290|gb|GL456437.1| GENE 63 63422 - 65620 2179 732 aa, chain - ## HITS:1 COG:BS_yvgS KEGG:ns NR:ns ## COG: BS_yvgS COG3973 # Protein_GI_number: 16080398 # Func_class: R General function prediction only # Function: Superfamily I DNA and RNA helicases # Organism: Bacillus subtilis # 8 726 11 763 774 264 28.0 4e-70 MTDEKIYEQQHLTTVYHELQAAKKVYEEQLANTMKDGKHMLEEFGRDSKLNFDSYADNLE TFAMLEMKNREIDQWNLKNEATAKNLDKVKRLLQVPYFGKIGVTFEDSPEEPENFYIGVN DFTSLEEETRIHDWRSPIASLFYDNVLGKTAYTAHQQTIPVQLDLKRQLIIEKDQLINYF DTTIAIQDDVLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAI MQRIAYLLYQHRAEITADNILLLSPNSTFIDYISQVLPNLGERNPLNLTLLQFLRFTTKE AWPMEEETDYFERITRSEATEQEHVIRSKEFATFLLSNPEKAVVQPHFFRPLTFKKQTLF TSETIFKLYQETPADLSIRQRISATKEKLTSLWTRYLLKQAHSKKMLDQFQDLTEAEQVR YFGTVITEDNEKHLADFALKRLKKKYRSITAAIKNDAWLDQWAFFETFYSLFTEKSYQKE TAVFTADEIVALILVKHAFIENLANQQMAFILVDEVQDYTEAQLLLLLTLFPKASFTLAG DENQAIFNTAIEFSEAHDLLVNETSRSVGTYQLLNSYRSSKEITRLFQTLGTQPEQLTIV PIRHDGEKPTFIPCDSASDYLKAIVTSITTFDSKESTAIITKTFSEKEQLTKELSASLSL EEHPSLQVLSIDMAKGLEFDNVILHNPNVNRYSDNKRDKKILYTAISRGMKRVVLPYTGT LSEWFTPYLAAR >gi|307679290|gb|GL456437.1| GENE 64 65779 - 66549 1070 256 aa, chain + ## HITS:1 COG:SPy0260 KEGG:ns NR:ns ## COG: SPy0260 COG0084 # Protein_GI_number: 15674440 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Streptococcus pyogenes M1 GAS # 2 255 21 274 274 320 61.0 2e-87 MIFDTHTHLNAEQFNDDIPETIAHAQELGVTEMAVVGFDEPTIEKSLLLSQEYANIYSII GWHPTEAGSYTPEVERRLQEQLTLPKIVALGEIGLDYYWMEDPKEVQEKVFRRQIAIARE MNLPFSVHTREALEDTYRILKDEKISDIGGIMHSFSGDAEWMKKFLDLGLHISFSGVVTF KKALDVQEAAMAVPLERMLVETDAPYLAPVPYRGKRNEPGYTRYVVEKIAELRQLTFEEV AEQTRVNAHRLFRIDK >gi|307679290|gb|GL456437.1| GENE 65 66558 - 67130 837 190 aa, chain + ## HITS:1 COG:BS_yabF KEGG:ns NR:ns ## COG: BS_yabF COG1658 # Protein_GI_number: 16077109 # Func_class: L Replication, recombination and repair # Function: Small primase-like proteins (Toprim domain) # Organism: Bacillus subtilis # 1 189 1 186 186 168 53.0 5e-42 MKVAEIIVVEGKDDTRRIQEVVAADTIETIGSAINDEILTQIEHAQETRGVIIFSDPDYS GEKIRKTIMEVVPDAKHAFLSRKVAVPKKNGGSLGVEHASDEAIIEALKKVVTPVQAGED YQEIPRQTLVEYGLIAGANAKKYRELLGDDLRIGYTNSKQLVKRLSMFRITEAELKESMT RILKELANEE >gi|307679290|gb|GL456437.1| GENE 66 67149 - 68036 922 295 aa, chain + ## HITS:1 COG:SPy0262 KEGG:ns NR:ns ## COG: SPy0262 COG0030 # Protein_GI_number: 15674442 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Dimethyladenosine transferase (rRNA methylation) # Organism: Streptococcus pyogenes M1 GAS # 7 291 3 287 290 349 63.0 4e-96 MTDYKEIATPSRTKEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPG IGALTEQLAMNAAQVVAFEIDDRLIPVLADTLSRYDNVTVVHQDVLKADLVETTNQVFQE KYPIKVVANLPYYITTPIMMHFLESSLDVAEMVVMMQKEVADRIAAKPGTKAYGSLSIAV QYFMEASVAFIVPKTVFVPQPNVDSAIIKLTRHATPAVTVTNEKEFFKLTKASFQLRRKT LWNNLTHFYGKDEQTVAWLKVSLAEAEIDPSRRGETLSLEEFARLSNALEKNKPV >gi|307679290|gb|GL456437.1| GENE 67 68164 - 68781 773 205 aa, chain + ## HITS:1 COG:no KEGG:EF0937 NR:ns ## KEGG: EF0937 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 205 1 205 205 329 100.0 5e-89 MKTNSVKRLTISALLIAMGIIIPMVMPRITIGPASFTLASHVPVFIAMFISPVVAIAVSL GTGFGFFLSATPIIALRALSHLIFAVIGAVILQKHPEILINKEGKFTLLNGKLQLFNVGI GVIHSAAELVVVSVFYTMGNLPGTYYTAGFMYSIFLLMGVGGLIHSLVDFSIAYFLASTL SKHVDIPTFTEAKQPKVIKKKVKLA >gi|307679290|gb|GL456437.1| GENE 68 68832 - 69935 1505 367 aa, chain - ## HITS:1 COG:SPy1976 KEGG:ns NR:ns ## COG: SPy1976 COG3839 # Protein_GI_number: 15675768 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Streptococcus pyogenes M1 GAS # 1 367 1 377 377 521 68.0 1e-148 MVEMALRNVYKKYDNAEHYSVTDFNLEITDREFIVFVGPSGCGKSTTLRMIAGLEDITEG ELSIGDKVMNDVAPKDRDIAMVFQNYALYPHMTVFDNMAFGLKLRKYDKAEIKKRVENAA DILGLTEYLQRKPAALSGGQRQRVALGRAIVRDAKVFLMDEPLSNLDAKLRVAMRAEIAK LHQRLETTTIYVTHDQTEAMTMADRIVIMKDGFIQQIGSPKEVYNTPKNMFVAGFIGSPA MNFFKVTLNNGVISNQHGLKLAIPEGRNKELVEHGYEGKELIFGIRPEDIHSEQVALTAM KDAVIKSEVVVSELLGAESMLYTKIGDTEFISKVDARDFHHPGEMIDLAFDINKGHFFDP QTEEVIK >gi|307679290|gb|GL456437.1| GENE 69 70121 - 70543 504 140 aa, chain + ## HITS:1 COG:lin2020 KEGG:ns NR:ns ## COG: lin2020 COG1803 # Protein_GI_number: 16801086 # Func_class: G Carbohydrate transport and metabolism # Function: Methylglyoxal synthase # Organism: Listeria innocua # 1 129 1 129 134 204 76.0 4e-53 MKIALIAHDRKKTLMIKLATAYKHILEKHELYATGTTGMKVMEATGLPVHCFKSGPLGGD QQIGAMISEDNIDLVIFLRDPLSAQPHEPDVTALIRLSDVYEIPLATNIGSAEILLRGVE AGFADFREVIHEGDRRPLAF >gi|307679290|gb|GL456437.1| GENE 70 70817 - 71356 555 179 aa, chain + ## HITS:1 COG:no KEGG:EF0940 NR:ns ## KEGG: EF0940 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 179 1 179 179 297 100.0 1e-79 MTKKKFGTKSIALMGVLIAVVVVFSRFFAYETTFLKISFTFIPESLIGMIFGPFWAGIGT AVADVVGMLLFPKAGYFPGFTLNAFLAGAIYGYFYYKKEMTWQRVILATLLVTVLINIIL TPLWLSLMYGVNLANFAWWVPRLIKTVIFFPIQVIATYYLGNKIPFKRLFGKPLSELDQ >gi|307679290|gb|GL456437.1| GENE 71 71408 - 73174 212 588 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 348 572 132 356 398 86 28 6e-16 MQTKKIHFGAFSRFKPYLLRYPKEIIGALILGILSGFSTVLMTYYIGKSVDTMVGKGQVN AAQLIKILGLLAGILLVTVLSQWLIQRLGNRVSYLSTTQLRKDAFAHLNQLPLSYYDQTS HGNIVSRFTNDIDNISMACSAVFNQLFSGMATVVVALLFMIRLSPLLTLVVLISTPIIFI VNWLVAKASQKNFAAQQTIVGEISGFVSEMVGNQKIVKAFQQEQATQETFEALNQTLYEK GQKAQFSSSLTNPLSRFIDHLSYLSIGLVGGLLVLSGNPLVTVGVISSFTIYSSQFSKPF IELSGITNQIQAALAGLERTFDMMDQPVERPDAPNAIVLKEARGRVEFKDVDFSYTPTRP LIENFNLIAEPGETIAIVGRTGAGKSTLVNLLMRFYEVDRGQITVDTHDITQITRDSLRK SFGMVLQDTWLFDSSIRENLTYGNPEASDEEIIEAMKKAHIFDFVMRLPQGLDTEIGSQG VKISEGQRQLMTIARTMISNPPMLILDEATSSVDTLTEQKIQDAFLQMMTGRTSFVIAHR LATIKSAEKILVMDNGQVVEIGTHDELLQKEQGYYRDLYEAQFNQKAQ >gi|307679290|gb|GL456437.1| GENE 72 73164 - 74891 183 575 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 347 555 19 224 305 75 27 1e-12 MFGLLKYAKNYRKQIILGPVFKFLEACFELVLPLFMAHLVDVGIRQNDRQTVIEMALWML VMSLVGLFFVMICQYYASVASQGFGTELRNQLMKKINQLSHKELNSFGTDTLITRITNDI NQLQLALAMFIRLVIRTPFLSIGSVVMAFYIDVQMGFLFLLLLPIFSLILFIIIKVTVPL YQKVQEYLDRLNRQISQNLSGVRVIRAFARKETEQRHVDKASDDLGDIYIRVSNVSALLT PLTTLIMNVGILFLLYFSGLKVSFGSLQQGEVLALINYMNQMMLALIVASNLVVIFTRAA ASANRVNEVLTVESQLTDTPESAKTSPQFGDITFDHVDFRYEPEAGLALENINFTIPKGS ILGITGPTGSGKSTLTQLIPRFYDVSAGNLFINGVNVRDWPLFTLRQQVASVPQTAVLFT GTIRENLQWGKPNATDEDCWEALAIAQCKEFVEQLDQGLDTPVNEGGKNFSGGQRQRLTI ARALIRKPHLLILDDSLSALDYQTDLNLRRALQKERAETTVILISQRVSSIATANQILVL DSGKVAGLGTHEELLTSSKEYQEIVASQEEDTHAN >gi|307679290|gb|GL456437.1| GENE 73 75017 - 75784 629 255 aa, chain + ## HITS:1 COG:lin2818 KEGG:ns NR:ns ## COG: lin2818 COG4905 # Protein_GI_number: 16801879 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 4 235 3 249 270 198 37.0 8e-51 MEKMSQIILLFFIYSFIGWLWETVYCSLKAKKFVYRGFLVGPYCPIYGFGVLSVLYFVEP FENNLLVLYVGSAVLVTILEYVTSYGLEKLFHASWWDYHDVPFNLNGRVALPVSLFWGLG CVLIVKVIQPEIAKVVSFLQATFGNYLALCIVIVMGLDLIYTLLNMQGFKKLITEMGQTL ETNQQEFKQRLNTKMEIATADWQKLKERTKKEHFQNRLNFQQRRFINNYPKLTLKNIKNS KEVRHLLEDLKKKGQ >gi|307679290|gb|GL456437.1| GENE 74 76046 - 77254 1409 402 aa, chain + ## HITS:1 COG:lin0225_2 KEGG:ns NR:ns ## COG: lin0225_2 COG3584 # Protein_GI_number: 16799302 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 310 401 1 89 91 103 56.0 6e-22 MKVKKLIPFLTTMMLINFGLPVAAAAESLDSLQEKEAQAKQSGELISKEINSALDDVNAK YAEIERLKTQISKAEDTLKTSKEEIEKTEKNISRRKEAVGDRMKDIQLNGDQRTWQALLD AENLSDFFNRAYAMTVLQNFEREKIESLTSEKEKLAALQEKVENTQTTLKKNEEKLQVEA SSMNNKVSELKEKMANNEELLAQISTDKQKEQQRLVSEKAAAEAQKKRAAETAKAEAAKK QAAADKQAQADAAAKLEAEAAEESSSQASSSSTSTESSSTESSSSASSSESSSTPESSTG ESSTPGTGSGRVLQMESTAYSWREAGASNLSATGIDLSKESNVVAVDPSVIPLGSLVKVS GYGFAIAGDTGGAIQGNIIDVHFDSVDQCRLWGRRQVTVEIQ >gi|307679290|gb|GL456437.1| GENE 75 77351 - 77914 917 187 aa, chain + ## HITS:1 COG:lin0816 KEGG:ns NR:ns ## COG: lin0816 COG0454 # Protein_GI_number: 16799890 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Listeria innocua # 1 185 1 185 185 172 47.0 3e-43 MIRSATKEDGQAIARLVLVILKDMELPILEEVSEEQMIDLLAEATAYPTYRYGYQRILVY EHAGEVAGIAVGYPAEDEKIIDEPLREVFKKHGLAEDVRLFIEEETLPNEWYLDTISVDE RFRGMGIGSKLLDALPEVAKASGKQALGLNVDFDNPGARKLYASKGFKDVTTMTISGHLY NHMQKEV >gi|307679290|gb|GL456437.1| GENE 76 77960 - 78484 413 174 aa, chain - ## HITS:1 COG:BS_yxjI KEGG:ns NR:ns ## COG: BS_yxjI COG4894 # Protein_GI_number: 16080945 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 159 1 159 162 66 27.0 2e-11 MSEFFIQEQQLGKVTRTIVKDQAGRSLFLLVGRWGTRGDALSLYAMNGEILASIKQVSWT FGTRFELYQRFEKVGTLRKLFNLNADFYYVQGLHWAVVGDIKAHQYSIYQVHKKIMSMDK TMLCTGDYFVLTVANDEDAPLCICIAAVLDYWLYNKKKQKTSDDFGLDFDPLTD >gi|307679290|gb|GL456437.1| GENE 77 78536 - 79405 1048 289 aa, chain - ## HITS:1 COG:BH1746 KEGG:ns NR:ns ## COG: BH1746 COG0561 # Protein_GI_number: 15614309 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Bacillus halodurans # 2 281 1 277 282 171 38.0 1e-42 MIKLIASDMDGTLLDAKMSITNDNASAIREAERLGIEFMVATGRAYTEAKPALEEAGIDC AMITLNGAQVFDKDGHSLFTAGIEKETVTEVLTILSQHNVYYEISTNKGIFSEHQEKRIE NFAAHIAESMPHLTYKVAIAMVSAHLSLLHITYVDRLDDILKDDSIEVLKIIGFSMDGPK VLGPAGMEVEELDDLVVTSSALNNIEINHRLAQKGIAVARVAKERGIPAEQVMTIGDNLN DVSMIQWAGVSFAMGNAELELKEYAKYETATNLENGVGEAILRAIREDL >gi|307679290|gb|GL456437.1| GENE 78 79539 - 80219 777 226 aa, chain + ## HITS:1 COG:BS_ung KEGG:ns NR:ns ## COG: BS_ung COG0692 # Protein_GI_number: 16080848 # Func_class: L Replication, recombination and repair # Function: Uracil DNA glycosylase # Organism: Bacillus subtilis # 1 220 1 220 225 311 69.0 5e-85 MKEIIHNSWQTVLSAEFEKPYYQELREFLKKEYQTQTIYPDMYHLFSALELTPFEEVKVV ILGQDPYHGPNQAHGLSFSVQPGVKVPPSLVNIYKELQADLGYQPVNHGFLESWAKQGVL LLNTVLTVRAGQAYSHRGKGWEQLTDVIIEKLNEREKPVVFILWGRPAQEKIKMIDTTRH VIIKSPHPSPLSAHRGFFGSRPFSQANAALERLGETPIDWQLPETV >gi|307679290|gb|GL456437.1| GENE 79 80375 - 81358 1261 327 aa, chain + ## HITS:1 COG:L107797 KEGG:ns NR:ns ## COG: L107797 COG0280 # Protein_GI_number: 15673641 # Func_class: C Energy production and conversion # Function: Phosphotransacetylase # Organism: Lactococcus lactis # 1 324 1 325 326 421 67.0 1e-117 MELFDSLKFKVVRRNIKIVFPEATDPRILGAAARLKSDELVEPILIGDPTDIANAAMARG INTSNFIIINPNDYEKWDEMVEAFVERRNGKATKEDAEKILKDVNYFGTMLTYMGIADGM VSGAIHSTGDTVRPALQIIKTKPGVSRTSGAFLMIRGRDQERYLFSDCAINVNPTAQELA EIAVDSAKTAELFDIEPKVSLLSFSTKGSAKAPEVTKVAEATKIAQELAPEYAIDGELQF DASYVSSVAQLKAPNSKVAGEATVFVFPDLQSGNIGYKIAQRLGNFEAIGPILQGLNKPV SDLSRGANEEDVYKLSIITAAQTLMND >gi|307679290|gb|GL456437.1| GENE 80 81516 - 81995 643 159 aa, chain + ## HITS:1 COG:BS_ydiB KEGG:ns NR:ns ## COG: BS_ydiB COG0802 # Protein_GI_number: 16077658 # Func_class: R General function prediction only # Function: Predicted ATPase or kinase # Organism: Bacillus subtilis # 7 139 10 140 158 148 54.0 4e-36 MNIVLNNPLETEAIAQIIGQKAQAGDVIVLTGDLGAGKTTMTKGIALGLGISQMIKSPTY TIIREYPQGRLPLYHMDVYRVEEGADELGLDEYFEGDGLSVVEWGSLIEEELPEDYLEII LNKDSQEADKRVLEFRGTGPLAEERIAEILKTWEAREYD >gi|307679290|gb|GL456437.1| GENE 81 81988 - 82509 216 173 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229236145|ref|ZP_04360568.1| acetyltransferase, ribosomal protein N-acetylase [Chitinophaga pinensis DSM 2588] # 4 164 9 170 181 87 28 2e-16 MTEQTFSIREAVPTDADQLLSVMSKIGSETPYLVMDERGMAMSTAELAENLATLYESPNN VLLVALAGEAIIGTASVSASSKKRMEHIGEIGISILKQYWGYGLGSILMEELIRWAHESH VIRRLELTVQDRNQRAIHVYKKLGFETEAIMPRGAKTDQGEFLDVHLMRLLID >gi|307679290|gb|GL456437.1| GENE 82 82679 - 82888 316 69 aa, chain + ## HITS:1 COG:no KEGG:EF0953 NR:ns ## KEGG: EF0953 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 69 1 69 69 105 100.0 6e-22 MAKATKMNVNYRESILDRAYRLELIKKDEYAKHQEKLSLLNEKLSDGEPAQFDAKEETFW KKISQKVIL >gi|307679290|gb|GL456437.1| GENE 83 82962 - 83972 1028 336 aa, chain - ## HITS:1 COG:SPy1293 KEGG:ns NR:ns ## COG: SPy1293 COG1609 # Protein_GI_number: 15675246 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 3 332 2 334 339 282 45.0 5e-76 MAITVKDVAKKAGVATSTVSRVINDHPSISESTKKKVRKVMDDLGYVPNMTARNLGKRIS SAIGVILPPLDSKERLGNPFYLEIMEAINEEARLYDMTTAIATAKSFDVLLENVKRMHLQ KQVDGFILVYSDSKDPVIDYLYENNIPFTLIGQPYQHETEIVYVDNDNQLLGKQATEFLI ENGHKNILFVTNTTHESLYFERYFGYQKAMMMQGLTVLPSVALEKPEDYMAFDDILHQNN ATALVVIDDIFALRTMQLAQIYGYQVPETLSIISFNNSIFSTLTHPYLTSIDIDTSELGR MAMKKLYELIHEELTNGVRLVIPHKLIKRETVIPIH >gi|307679290|gb|GL456437.1| GENE 84 83996 - 85003 329 335 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900011|ref|NP_344615.1| aldose 1-epimerase [Streptococcus pneumoniae TIGR4] # 27 331 29 341 345 131 29 2e-29 MKDNRITVTDIPNTNLKKITLKNDFLEVVLLNYGARLHQLLMPNKNNHWENILLSYDSYQ DVLKDQSFFGATVGPVAGRIRNGHWQNGILEQNSDSHHIHGGSKGWSFQYWTVEPFEKKD IIGVAFHLTDTISGYPGPIEATITYQLEDNHLRMISTGRSKQETLFNPTNHAYFNLSGDG KLDILSHLLSLNCQGMLELDDNKLPTGRILPASELSIRFNELTPIETILQRYPTGLDDVF PLVGSDLRQPQLCLQEPTSGRKMTIATTNQSMVLFSTTGFEAPFSINGQAMHSNYGLAIE PQEYPDIVHHPQWGSILLPANKKQTYQTVYQFNLL >gi|307679290|gb|GL456437.1| GENE 85 84993 - 85661 702 222 aa, chain - ## HITS:1 COG:L0001 KEGG:ns NR:ns ## COG: L0001 COG0637 # Protein_GI_number: 15672411 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Lactococcus lactis # 1 221 1 220 221 275 64.0 4e-74 MFKGVLFDLDGVITDTAEFHYHAWKKLGNEIGISIDRVFNEQLKGVSREDSLQLLLKYGK KEGTFSSEEFAQLAQRKNDYYLEMIQAITPEDVYPGILSLLTELREANIKIALASASKNG PFLLEKMQLTPLFDAIANPADVQAGKPAPDIFILAAKEIDLTPAECLGIEDAKAGIQAIL ASGAQPVGVGRKEELGEGLPIVPETSALTFDYLKKVWLDHEG >gi|307679290|gb|GL456437.1| GENE 86 85654 - 87948 2203 764 aa, chain - ## HITS:1 COG:NMB0390 KEGG:ns NR:ns ## COG: NMB0390 COG1554 # Protein_GI_number: 15676304 # Func_class: G Carbohydrate transport and metabolism # Function: Trehalose and maltose hydrolases (possible phosphorylases) # Organism: Neisseria meningitidis MC58 # 6 759 4 752 752 938 63.0 0 MKQIKRLFQIDPWKIRTTHLDKENLRLQESLTSIGNGYMGMRGNFEEHYSGDHHQGTYLA GVWYPDKTRVGWWKNGYPEYFGKVINAINFIAMDLQIDGQTIDLATTPYEDFSLELDMQN GVLSRQFTIQTPKNKVRFSFERFLSLEKKEAAYIHLTIEMLEGTGTITLHSKLDGDVQNE DSNYEEHFWEEIAIETQETLGFVTTKTIPNNFEIERFTVTAGMRHFIDGASVVPTYTQQP LALTAELTVSLNEGETTAITKEVLVVTSRDVPETQQITRVNELFSEMTTLYPEAKAGQAA AWAKRWQLADVVIEGDDEAQQGIRFNLFQLFSTYYGEDDRLNIGPKGFTGEKYGGATYWD TEAYAVPLYLALAKPEVTKNLLKYRHNQLPQAIHNAQQQGLKGALYPMVTFTGVECHNEW EITFEEIHRNGAIAYAIYNYVNYTGDQDYLKDAGLEVLVAIARFWADRVHFSQRHKQYMI HGVTGPNEYENNINNNWYTNTIAAWVLRYTRESYLKFQEETTLKIADDELAKWADIVENM YFPVDNELGIFVQHDTFLDKDLMPVSDLPLSELPLNQHWSWDKILRSCFIKQADVLQGIY FFNDAFSLEEKRRNFNFYEPMTVHESSLSPSIHAVLAAELGMEEKAVEMYQRTARLDLDN YNNDTEDGLHITSMTGSWLAIVQGFAQMKTDHQQLKFAPFLPATWTAYSFHINYRNRLLF VEVAADQVAFTLLDGPAIPLTVYDQKYTLKDRLVLPIRKEEVHV >gi|307679290|gb|GL456437.1| GENE 87 88238 - 90397 2432 719 aa, chain + ## HITS:1 COG:SPy1986_1 KEGG:ns NR:ns ## COG: SPy1986_1 COG1263 # Protein_GI_number: 15675776 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Streptococcus pyogenes M1 GAS # 1 451 8 457 472 654 71.0 0 MFSFEFWQKFGKALMVVVAVMPAAGLMISIGKSLPLIDPNLGLLVTTGGVLESIGWAIIG NLHLLFALAIGGSWAKDRAGGAFAAGISFVLINRITGAIFGVTNEMLADEQAFTHTLFGT KIMVKGFFTSVLEAPALNMGVFVGIIAGFVGAMAYNKYYNYRKLPDALSFFNGKRFVPFV VILWSTIVSIALALIWPNIQAGINNFGLWIAQSQDSAPILAPFLYGTLERLLLPFGLHHM LTIPINYTQLGGTYEILSGAQAGTQVFGQDPLWLAWATDLVNLKGAGDMSKYQFVLENWT PARFKVGQMIGSSGILMGMALAMYRNVDADKKAKYKSMYFSAALAVFLTGVTEPLEFMFM FAAVPLYVIYAVIQGAAFAMADILPLRVHSFGNIELLTRTPLAIKAGLGGDLINFVLMVI IFGVVTYFLANFLIKKFNYATPGRNGNYDNDNGEEIASGAADSGVVDQQIAQIVYLLGGK QNIKEVDACMTRLRVSVKDREKVGSEEAWKRAGAMGLIVKDNGVQAVYGPKADVLKSDIE DLLASGVDIPEPVIAESTTGVPATNFLGKKKDFVAVATGEVIPMAQVNDPVFSQKMMGDG FAVKPLEGEVVAPISGKVLSVFPSKHAIGLQTEEGIEVLVHMGIDTVEMATPAFESFVKE GQSLKAGTKLAKMNLDVIEQAGKETTIIVAFTNSDKVEQVVINQLGTTTAGTVIGQIEI >gi|307679290|gb|GL456437.1| GENE 88 90463 - 91287 652 274 aa, chain + ## HITS:1 COG:SPy1985 KEGG:ns NR:ns ## COG: SPy1985 COG3568 # Protein_GI_number: 15675775 # Func_class: R General function prediction only # Function: Metal-dependent hydrolase # Organism: Streptococcus pyogenes M1 GAS # 3 273 4 269 272 214 40.0 1e-55 MNLLTINTHSWLEEEPLKKLEEIAKVILSSESEIIALQEVNQKVASKKVPLEQLTTFCPI ATQTPIHEDNFAYLIVQYLAEKGQHYYWSWEMSHIGYAIYEEGNALLSKCPLTSEALLIS ESQEPTNYRTRKILVAETESSKGTLTVVSGHFSWWETPCTGFAYEWLQLEKYLAMGQQPL VILGDLNNPAGTTGYQLVENSYLPIQDAFVVAEETSGEATVEKKIDGWEENEAALRIDYA FVPKQWHVRKYEVIFDGRKTPIVSDHFGLLIQLK >gi|307679290|gb|GL456437.1| GENE 89 91347 - 92162 1116 271 aa, chain - ## HITS:1 COG:L135991 KEGG:ns NR:ns ## COG: L135991 COG0345 # Protein_GI_number: 15673866 # Func_class: E Amino acid transport and metabolism # Function: Pyrroline-5-carboxylate reductase # Organism: Lactococcus lactis # 3 267 4 262 262 179 42.0 5e-45 MKISFIGAGNMASAIAKGALKKQFIAAENLYFYDIQVEKTAAFAQEIGAHAVASPQEAIT VADLVILAVKPQFVQAALLEAKEAILDKQPLIVSIAAGTTIAELYQLFETTQPLRLVRVM PNMNALIGAGAAAVCGNAFASPEDIQTVLSLFRAVGQAWELEEQYFSIFTAIAGSTPAYA FLFIDSIARAAVKNGMNKELALEIATQAVLDSAQTLANSTENPWTLIDQVSSPGGTTVAG IVELENNAFISTVIKGIEATILRDQELAKQD >gi|307679290|gb|GL456437.1| GENE 90 92289 - 93251 650 320 aa, chain + ## HITS:1 COG:BH3679 KEGG:ns NR:ns ## COG: BH3679 COG4753 # Protein_GI_number: 15616241 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Bacillus halodurans # 190 309 141 254 257 85 41.0 1e-16 MASKEEQYAAFYQFLETLDCYLTTTNALENEVAQFKENPHREIAGFMLASSETIDVPKGF IRMLYCLEQDGYAYLDQQRCSFSAGQVMIVNEATSVSYQGQGMSMIIFYFKKHYFLDTLL NQLAEEPVMYRFFTEIASSEFENIPRYFVFASQPNSDVHVYSLLLLKQIVKMAYFNNKVT KAAFVLLVVELGQLPREALKMQDNYLSNHQRVEVILAYIEQQIAHVTLAEVAAKFHFHPN YLSNFLKEKTNKTFTEIVLAYRIQLAKNYLKQTDLSIQTIVERIGYQDKAFFYKRFKEEM GMTPKQYRQKEGMADVRRSL >gi|307679290|gb|GL456437.1| GENE 91 93232 - 93531 361 99 aa, chain + ## HITS:1 COG:no KEGG:EF0963 NR:ns ## KEGG: EF0963 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 99 1 99 99 147 100.0 2e-34 MYEEVFEEFQLTVVELPIEFVDDLPVYRGHLKELTFLSAEASSRKKLYQQLLQAYLLYRE ENQAVVEEEEITSSLLSTEQLLKYYDGETFDGFQLPSNE >gi|307679290|gb|GL456437.1| GENE 92 93503 - 93838 333 111 aa, chain + ## HITS:1 COG:BH3997 KEGG:ns NR:ns ## COG: BH3997 COG1694 # Protein_GI_number: 15616559 # Func_class: R General function prediction only # Function: Predicted pyrophosphatase # Organism: Bacillus halodurans # 21 111 10 101 101 110 64.0 7e-25 MGFSCHQMNKKAGEQMDTMAKINQFRDERNWRPHHNEKDLALSICLEAAELLELFQWKTA EEGIKQEERIKEELADVLIYSYMMADNLGFDLDEIIEEKLKKNALKYPVPH >gi|307679290|gb|GL456437.1| GENE 93 93993 - 94313 81 106 aa, chain - ## HITS:1 COG:no KEGG:EF0965 NR:ns ## KEGG: EF0965 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: ABC transporters [PATH:efa02010] # 1 106 132 237 237 137 98.0 1e-31 MISIQYILIVALISFLSANVLLSIGFSILYWITTVLFVAIGGFLRFFAIFDASNELYLNV QNFLEGSENSISFDHNLLIILYIIVLTVIALAIARVNNKRWLRLGV >gi|307679290|gb|GL456437.1| GENE 94 94310 - 94705 225 131 aa, chain - ## HITS:1 COG:no KEGG:EF0965 NR:ns ## KEGG: EF0965 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: ABC transporters [PATH:efa02010] # 1 128 1 128 237 154 100.0 9e-37 MELKKTISNKIMIILIAIIVAIFAMGWILPIGIDKVTRLSYREYLFSTYTVFTQFGFLMF SFLVSFFINKEYSGKTILFYRMMNTNSLTFYIKKVLTLTVETLGSILVLLFIVSFIFMDF SVILQMFFYYR >gi|307679290|gb|GL456437.1| GENE 95 94710 - 95342 534 210 aa, chain - ## HITS:1 COG:Cgl0491 KEGG:ns NR:ns ## COG: Cgl0491 COG1120 # Protein_GI_number: 19551741 # Func_class: P Inorganic ion transport and metabolism; H Coenzyme transport and metabolism # Function: ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components # Organism: Corynebacterium glutamicum # 2 191 5 215 264 64 25.0 1e-10 MLELNDYTLKINNKLLLEHTKVSFRKGVINHILGKNGVGKSQFAKDLLLNRSGLIPSEIS KNVTIISSFSNVPNDLKVCELFILLEKRFGLDSVAHLAHSLHATNISKTSLIGQLSDGQK QKLKLLSFFLEDKSIIVLDEITNALDKQTINEIYLFLLAYIKNHPKKIILNITHNLSDLK NLKGNYYLIEDFKMIRFTNQTEVIQKYIEG >gi|307679290|gb|GL456437.1| GENE 96 95353 - 95502 68 49 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|257086304|ref|ZP_05580665.1| ## NR: gi|257086304|ref|ZP_05580665.1| conserved hypothetical protein [Enterococcus faecalis D6] conserved hypothetical protein [Enterococcus faecalis D6] conserved hypothetical protein [Enterococcus faecalis TX2137] # 1 49 202 250 250 76 95.0 8e-13 MLNSDGYKVLNTLFSVDELENKRKNHLIVKLIQAISLLLVIETVISWFV >gi|307679290|gb|GL456437.1| GENE 97 95850 - 96626 687 258 aa, chain + ## HITS:1 COG:all0345_1 KEGG:ns NR:ns ## COG: all0345_1 COG0789 # Protein_GI_number: 17227841 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Nostoc sp. PCC 7120 # 1 113 21 133 135 70 32.0 3e-12 MYQIGQFAKLMDISPRMLRHYEKAGIFVPNEIDKKTGYRYYSAHQIPLLKQILLLRDSGF KVEEMAETLRKLKDASFLETILLRKRDQSRHLIQMEEQKIKKINQQLVALKEEKQMIKGT EIDFIVSDSLKALALYKKVFEIEVVEATEYPVGMNEAVFQLYGTRFHMLDANEEYGLKSP TQEHPNTIWFNITVENIEETHQLAMENGCQEVQPITEMMEGALKNSLFIDPYGYMWMLHQ IYQELSFDERIEILENEL >gi|307679290|gb|GL456437.1| GENE 98 97418 - 97726 518 102 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375551|ref|NP_814705.1| 50S ribosomal protein L21 [Enterococcus faecalis V583] # 1 102 1 102 102 204 100 2e-51 MYAIIKTGGKQVKVEVGQAIYVEKLNVEAGEKVVFDEVILVGGESTKVGAPTVAGATVEG TVEKHGKQKKVVTFQYKPKKHSHRKQGHRQPYTKVMIEAINA >gi|307679290|gb|GL456437.1| GENE 99 97759 - 98103 563 114 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229546816|ref|ZP_04435541.1| possible ribosomal protein [Enterococcus faecalis TX1332] # 1 114 1 114 114 221 100 1e-56 MIKGSFKRTGSGRIVSFELTGHAEAGPYGSDVVCAAVSALAISTVNGIDALAGFEPIVEV EDVEGGYLYVEMLTTVNQEQKNIAQILLENLLLGLQSIENENTEFIQIKTITEK >gi|307679290|gb|GL456437.1| GENE 100 98116 - 98403 485 95 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375553|ref|NP_814707.1| 50S ribosomal protein L27 [Enterococcus faecalis V583] # 1 95 1 95 95 191 100 1e-47 MLLTMNLQLFAHKKGGGSTSNGRDSESKRLGAKSADGQTVTGGSILYRQRGTKIYPGVNV GIGGDDTLFAKVDGVVRFERKGRDKKQVSVYPVAN >gi|307679290|gb|GL456437.1| GENE 101 98400 - 98474 84 24 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVKYFPETTKKAQTFDKQRFELLH >gi|307679290|gb|GL456437.1| GENE 102 98493 - 99656 486 387 aa, chain - ## HITS:1 COG:L48477 KEGG:ns NR:ns ## COG: L48477 COG0582 # Protein_GI_number: 15672029 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Lactococcus lactis # 4 387 3 394 394 248 35.0 2e-65 MAMIRQYQKKSGEKAWYFKTYLGIDPLTKKKKYTTKRGFKTQKEAKIALARLEMEIERNG IKQSSSITFQEIAVMWLENYKNTVKDSSYSRTNIIFNKHIFPHFGKIEIAKINTAYCQKV VNNWHTNGTSKQYPLFLNYMNKVFKFAISMGVTAENPTTNVIIPKNKETANPKDTKIKFY NKDQLQKFLECIHQQPQENNYITLRDYTLFRLLAFSGCRIGELLALTWDDLNLKTGELQI NKTVTKSDTYYVSSTPKTKKSNRIIILDRITLECLKKWRSEQKKFLFKLGFTQPSRIFTN DSNEFTINQSVTERYKIYQKKANLPNIGLHGFRHTHASLLYNAGADHKEVQERLGHANIK TTLDTYTHLTDDRKEVTTEKLANYIGF >gi|307679290|gb|GL456437.1| GENE 103 99659 - 99898 280 79 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|307290991|ref|ZP_07570880.1| ## NR: gi|307290991|ref|ZP_07570880.1| hypothetical protein HMPREF9509_01300 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9509_01300 [Enterococcus faecalis TX0411] # 1 79 1 79 79 139 100.0 6e-32 MITFNDLSKNEKKLVLQMINESLAGAEFFSKEKLTEHDRGVIFDYLINNLQTTVRFRDNN KNHPRFDEINELCKKYWER >gi|307679290|gb|GL456437.1| GENE 104 99900 - 100139 167 79 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|307290992|ref|ZP_07570881.1| ## NR: gi|307290992|ref|ZP_07570881.1| hypothetical protein HMPREF9509_01301 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9509_01301 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9519_01612 [Enterococcus faecalis TX1346] # 1 79 1 79 79 152 100.0 8e-36 MTDFNKALTAKELISILNTVPPETKVHFIGATLCSGNLLPFHAPVFRVSKGYKITSNNEL SIGLFGVQKSDIELNIEGK >gi|307679290|gb|GL456437.1| GENE 105 100203 - 100631 161 142 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|307290993|ref|ZP_07570882.1| ## NR: gi|307290993|ref|ZP_07570882.1| toxin-antitoxin system, toxin component family protein [Enterococcus faecalis TX0411] toxin-antitoxin system, toxin component family protein [Enterococcus faecalis TX0411] # 1 142 1 142 142 289 100.0 5e-77 MNNYVENQFDKIVTKYQPSSVYDLVKKANCKILYADIDDETGGCTQTNDRCHTIIVNANW PEHYQKFVILHEFSHIKLHKGASTPFYRSLGLDTFVSKMECEANSLAMKLLLHMQDQSII HGLTKFQIMDYLGLPHELSRYF >gi|307679290|gb|GL456437.1| GENE 106 100646 - 101059 385 137 aa, chain - ## HITS:1 COG:lin1762 KEGG:ns NR:ns ## COG: lin1762 COG1396 # Protein_GI_number: 16800830 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 3 137 2 142 146 67 32.0 1e-11 MSIVDRIKMLASQKKMTLTELERKLDFSQSSIRKWDKQPPGIKKLQKVADFFDVSTDYLL GRTEKKKYYELSDKEKNDIAIQAEELIEGIANGENLNFYGEPATQEQKDRLLIAIRTAME MNKEEAKKKFTRKDYRN >gi|307679290|gb|GL456437.1| GENE 107 101327 - 101527 164 66 aa, chain + ## HITS:1 COG:L105494 KEGG:ns NR:ns ## COG: L105494 COG1396 # Protein_GI_number: 15672489 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 2 63 3 64 122 58 46.0 3e-09 MIYEKIKKLAISNHVSINRIEKDLGFSSSTISKWNNSNPTSGKLKQVADYFGVSMESLLE DEKKEA >gi|307679290|gb|GL456437.1| GENE 108 101531 - 101815 359 94 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307290996|ref|ZP_07570885.1| ## NR: gi|307290996|ref|ZP_07570885.1| hypothetical protein HMPREF9509_01305 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9509_01305 [Enterococcus faecalis TX0411] # 1 94 1 94 94 157 100.0 2e-37 MHLNIPDEVIQNELANNITFVVLKEVEKRLNLLTKVIELPPYPNKSQVKKILEIGDEKLS NWISKGLKVQQWSGQDIRIERSELQRFLKETFEI >gi|307679290|gb|GL456437.1| GENE 109 101830 - 102543 752 237 aa, chain + ## HITS:1 COG:HI1412 KEGG:ns NR:ns ## COG: HI1412 COG3646 # Protein_GI_number: 16273319 # Func_class: S Function unknown # Function: Uncharacterized phage-encoded protein # Organism: Haemophilus influenzae # 4 106 13 115 173 64 33.0 2e-10 MNNLVIMKNQQAVTSSLQVAEVFEKQHKHVIEAIEAKIQSAENSAHYQKMFADGEYKDSR GRKQRLYYMNRDGFSFIAFGFTGKKADAFKLKYIEAFNQMEKEIQQPKLPTSQRQLAMLA LSANEETNERVDVIEKEVADLKDNQKIGADDYGYLSRRVHQRVAEVARGFGKITKEQRGK LYKDINSGIKQITGVGTRSQLREKHYPMVIEYINDWEPSTATKTVVRQMSFDLNDIA >gi|307679290|gb|GL456437.1| GENE 110 102554 - 102739 263 61 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315143729|gb|EFT87745.1| ## NR: gi|315143729|gb|EFT87745.1| conserved domain protein [Enterococcus faecalis TX2141] # 1 61 1 61 61 74 95.0 2e-12 MAYTTEQEAWILNQIKKERKQLQDDRAALRQSEQLTEGKAYQIEKELEFLRYLEIQNRMH I >gi|307679290|gb|GL456437.1| GENE 111 102751 - 102924 185 57 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307290999|ref|ZP_07570888.1| ## NR: gi|307290999|ref|ZP_07570888.1| hypothetical protein HMPREF9509_01308 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9509_01308 [Enterococcus faecalis TX0411] # 1 57 1 57 57 93 100.0 5e-18 MRKIYNLRRIAVLLIVFGLGLLVGGDFNPIIQNVYIGLFIIWTLFYDLALEDREVNK Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:52:15 2011 Seq name: gi|307679289|gb|GL456438.1| Enterococcus faecalis TX0411 genomic scaffold Scfld115, whole genome shotgun sequence Length of sequence - 517 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 516 469 ## COG5492 Bacterial surface proteins containing Ig-like domains Predicted protein(s) >gi|307679289|gb|GL456438.1| GENE 1 3 - 516 469 171 aa, chain + ## HITS:1 COG:CAP0002_1 KEGG:ns NR:ns ## COG: CAP0002_1 COG5492 # Protein_GI_number: 15004707 # Func_class: N Cell motility # Function: Bacterial surface proteins containing Ig-like domains # Organism: Clostridium acetobutylicum # 7 160 123 337 484 111 34.0 8e-25 GDVSRYYDVYYRVHIQDKGWLNWAANGASAGSQAASKHLEAIQIKIVRKGETAPKGSGKA FLVGNEAKRPDEIKPTVNYQTHVQNIGWQGVVKNGEIAGTSGKNLQLEAIKINLSDAALA GNIEYSTHIQNIGWQDYKANGALSGTTGKNLQLEAIKIKLAGDVSRYYDVY Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:52:34 2011 Seq name: gi|307679288|gb|GL456439.1| Enterococcus faecalis TX0411 genomic scaffold Scfld117, whole genome shotgun sequence Length of sequence - 70427 bp Number of predicted genes - 53, with homology - 51 Number of transcription units - 23, operones - 14 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 2556 2275 ## EF2224 cell wall surface anchor family protein - Term 2930 - 2978 -0.5 2 2 Tu 1 . - CDS 3029 - 3796 923 ## EF2225 MerR family transcriptional regulator - Prom 3932 - 3991 3.0 + Prom 3812 - 3871 4.2 3 3 Op 1 35/0.000 + CDS 3911 - 5638 191 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 + Prom 5640 - 5699 4.0 4 3 Op 2 . + CDS 5736 - 7469 207 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Term 7473 - 7525 9.5 - Term 7461 - 7513 13.3 5 4 Tu 1 . - CDS 7523 - 8527 1422 ## COG0180 Tryptophanyl-tRNA synthetase - Prom 8556 - 8615 8.2 - Term 8613 - 8679 12.7 6 5 Op 1 . - CDS 8689 - 12468 3708 ## EF2229 hypothetical protein 7 5 Op 2 . - CDS 12479 - 13447 891 ## EF2230 hypothetical protein - Prom 13479 - 13538 3.4 - Term 13478 - 13536 6.3 8 6 Op 1 . - CDS 13548 - 14219 428 ## EF2231 hypothetical protein 9 6 Op 2 38/0.000 - CDS 14232 - 15110 859 ## COG0395 ABC-type sugar transport system, permease component 10 6 Op 3 35/0.000 - CDS 15122 - 16024 549 ## COG1175 ABC-type sugar transport systems, permease components - Prom 16106 - 16165 7.1 - Term 16084 - 16133 -0.0 11 6 Op 4 . - CDS 16175 - 17452 1730 ## COG1653 ABC-type sugar transport system, periplasmic component 12 6 Op 5 . - CDS 17502 - 18644 1182 ## EF2235 glucuronyl hydrolase, putative 13 6 Op 6 . - CDS 18660 - 20459 1486 ## COG4289 Uncharacterized protein conserved in bacteria 14 6 Op 7 . - CDS 20440 - 20826 292 ## EF2237 putative lipoprotein + Prom 20924 - 20983 9.2 15 7 Tu 1 . + CDS 21003 - 22064 1137 ## COG1609 Transcriptional regulators + Term 22069 - 22112 2.5 - Term 22057 - 22100 6.3 16 8 Op 1 . - CDS 22105 - 22938 887 ## EF2239 hypothetical protein 17 8 Op 2 . - CDS 22977 - 23135 73 ## gi|315170354|gb|EFU14371.1| hypothetical protein HMPREF9518_02075 18 8 Op 3 . - CDS 23146 - 23451 344 ## gi|256853690|ref|ZP_05559055.1| conserved hypothetical protein 19 8 Op 4 . - CDS 23479 - 25074 1326 ## COG4146 Predicted symporter 20 8 Op 5 16/0.000 - CDS 25098 - 25988 1073 ## COG1082 Sugar phosphate isomerases/epimerases 21 8 Op 6 9/0.000 - CDS 26010 - 27029 955 ## COG0673 Predicted dehydrogenases and related proteins 22 8 Op 7 . - CDS 27053 - 28060 906 ## COG0673 Predicted dehydrogenases and related proteins - Prom 28087 - 28146 10.7 - Term 28187 - 28228 8.0 23 9 Op 1 5/0.000 - CDS 28234 - 29691 1331 ## COG1012 NAD-dependent aldehyde dehydrogenases 24 9 Op 2 1/0.000 - CDS 29731 - 30570 777 ## COG3718 Uncharacterized enzyme involved in inositol metabolism 25 9 Op 3 8/0.000 - CDS 30609 - 32525 1517 ## COG3962 Acetolactate synthase 26 9 Op 4 8/0.000 - CDS 32536 - 33570 839 ## COG0524 Sugar kinases, ribokinase family - Prom 33604 - 33663 6.4 - Term 33679 - 33726 4.4 27 9 Op 5 . - CDS 33729 - 34745 818 ## COG1879 ABC-type sugar transport system, periplasmic component - Prom 34840 - 34899 10.0 - Term 34885 - 34920 4.2 28 10 Tu 1 . - CDS 34933 - 36768 2062 ## COG0481 Membrane GTPase LepA - Prom 36886 - 36945 7.0 + Prom 36809 - 36868 7.0 29 11 Op 1 . + CDS 37015 - 38235 1175 ## COG4552 Predicted acetyltransferase involved in intracellular survival and related acetyltransferases 30 11 Op 2 . + CDS 38259 - 38738 596 ## COG3613 Nucleoside 2-deoxyribosyltransferase + Term 38739 - 38794 14.7 - Term 38738 - 38771 5.4 31 12 Tu 1 . - CDS 38778 - 41384 3414 ## COG0542 ATPases with chaperone activity, ATP-binding subunit - Prom 41412 - 41471 9.1 - Term 41560 - 41601 3.3 32 13 Tu 1 . - CDS 41654 - 42025 418 ## COG2259 Predicted membrane protein - Prom 42070 - 42129 8.9 - Term 42160 - 42205 9.9 33 14 Op 1 3/0.000 - CDS 42209 - 43504 1713 ## COG0015 Adenylosuccinate lyase 34 14 Op 2 . - CDS 43547 - 44662 1286 ## COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) - Prom 44739 - 44798 6.3 - Term 44938 - 44971 -0.9 35 15 Op 1 7/0.000 - CDS 44990 - 46309 432 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 36 15 Op 2 . - CDS 46312 - 46893 851 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins - Term 47060 - 47090 -0.5 37 16 Op 1 . - CDS 47276 - 47962 994 ## EF2366 hypothetical protein 38 16 Op 2 . - CDS 47982 - 48623 774 ## COG1705 Muramidase (flagellum-specific) - Prom 48643 - 48702 1.9 39 17 Op 1 . - CDS 48723 - 48941 247 ## 40 17 Op 2 . - CDS 48962 - 49480 686 ## EF2369 hypothetical protein - Prom 49589 - 49648 7.1 + Prom 49551 - 49610 8.7 41 18 Tu 1 . + CDS 49653 - 50612 1077 ## COG0673 Predicted dehydrogenases and related proteins + Term 50619 - 50654 5.1 - Term 50597 - 50651 12.3 42 19 Op 1 5/0.000 - CDS 50660 - 51994 1524 ## COG0017 Aspartyl/asparaginyl-tRNA synthetases 43 19 Op 2 5/0.000 - CDS 52029 - 53228 1201 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 44 19 Op 3 2/0.000 - CDS 53267 - 53773 531 ## COG5353 Uncharacterized protein conserved in bacteria - Prom 53798 - 53857 5.7 45 19 Op 4 . - CDS 53861 - 56632 2537 ## COG1199 Rad3-related DNA helicases - Prom 56656 - 56715 5.3 - Term 56729 - 56778 14.1 46 20 Op 1 . - CDS 56831 - 58207 1189 ## EF2376 hypothetical protein - Prom 58309 - 58368 5.5 - Term 58333 - 58381 12.5 47 20 Op 2 . - CDS 58426 - 59883 1651 ## COG0531 Amino acid transporters - Prom 59921 - 59980 9.7 - Term 60034 - 60073 5.0 48 21 Tu 1 5/0.000 - CDS 60095 - 64450 4578 ## COG2176 DNA polymerase III, alpha subunit (gram-positive type) - Prom 64535 - 64594 7.9 - Term 64590 - 64639 14.1 49 22 Op 1 7/0.000 - CDS 64701 - 66419 2288 ## COG0442 Prolyl-tRNA synthetase 50 22 Op 2 . - CDS 66491 - 67759 1452 ## COG0750 Predicted membrane-associated Zn-dependent proteases 1 51 22 Op 3 . - CDS 67806 - 67886 64 ## - Prom 67919 - 67978 6.0 + Prom 68087 - 68146 2.3 52 23 Op 1 . + CDS 68176 - 68955 250 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 + Term 68962 - 69011 11.5 + Prom 68957 - 69016 3.2 53 23 Op 2 . + CDS 69040 - 69642 639 ## COG2364 Predicted membrane protein + Term 69662 - 69723 3.6 Predicted protein(s) >gi|307679288|gb|GL456439.1| GENE 1 3 - 2556 2275 851 aa, chain - ## HITS:1 COG:no KEGG:EF2224 NR:ns ## KEGG: EF2224 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 851 1 851 1499 1464 98.0 0 MNKAVKNFVSYLMITMLFILNLLPMMNAFAQEVTSDAEKTVEKDGLKVIGKIEDTSSQED IKTVTYEVTNTRDVPIKDLILKQKNTNDSPIKFVLDTLSEERGPTSLEEQAKVETNEKDQ TTDIKLLNLQPNSTRKITINGQITTKASSKLLVSVLIEDNEKGTLVIDLPNKYMLADKES VSKEKQETSETKVENQANETASSTNEMTATTSNETKPEAGKATESIQETALTQATESPEQ PPLKAQPTGPLVPPTPGRGFNTPIYQSVHKGELFSTGNTNLKIANENTAAAQTFLNTRGA SSGYAINNFPLEFADVDNDPNTYNSSRAYIDLNGAKEIAWAGLFWSASRYKGPAYGTNLS DEEISAPVQFTTPNGTVQRVSPQRYHRIDQDATNPGQRFGYNNTGFSNYADVTSILQGDK SATGSYTLADIPMTSSLNGQYQYYNFSGWSLFVVTKDQASKSRAFSIYYGARGNAAGTNN EFTMSNFLTAKQGNLDPIVTWFTVQGDKYWTGDNAQIKNSAGTWVNISNTLNPVNNAMNV TVTDNDEHMVDKYPGKFAPDHPNFLDIDIDRMAIPEGVLNAGQNQINFRTTSSGDDYSTN AIGFAVNAETPEFEIKKEIVEPKETYKVGETITYRVSLKNTKADSEAINSVSKDALDGRL NYLPGSLKIISGPNSGEKTDASGDDQAEYDETNKQIIVRVGNGATATQGGSYKADTAETI YEFKARINERAKANELVPNSAAVEAVDILTSAKVNETSNIVEAKIADEQVTGKLTATKTV NNSKPKLGEAIEYTISFRNTIENGVLNKVVITDQLLKGLTYVKDSLTSVGDEPKPISLKE INGTITAEYPS >gi|307679288|gb|GL456439.1| GENE 2 3029 - 3796 923 255 aa, chain - ## HITS:1 COG:no KEGG:EF2225 NR:ns ## KEGG: EF2225 # Name: not_defined # Def: MerR family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 255 1 255 255 464 100.0 1e-129 MEKNYTIKDVSELLNIPKSTIRYWDEQGLISTTRNEENGYRTFDLEDLFKIYDIDFYRKM GIPIKDMLNLYKKTPTDLYATMEATEEQLGQEIKRLQHKYKEIKKRKLHLHALIDLETLV FSDEPIPFDKIVVVDIEDPEEMKVYMEHISTLGIYGDLSESNELTYGICLANHVNKKSLD KVIWLKESSSQYKGFILKVNTQDTRLNNIEEVKKRLAKQGFETGIVVGEHILTQLEEENQ YIEYYYGWIEILGEK >gi|307679288|gb|GL456439.1| GENE 3 3911 - 5638 191 575 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 333 558 278 509 563 78 26 1e-13 MKLMKEFIKENKWIVLATTLTICLQIAGTLGVPKLVGKLIDVGIVSGDQQVIKTIGIQMF LVAFIGTIAAIISSYLSALVAAKFGFQVRGLFFKKFQQFSMKNVDKFGSNSLLTRMTNDV DNVQTMIVLFCQLIFPAPIISLFALVMTFSYSVSLAWVTLASIVFYLVVVYFLMKKGTPL SLKIQPKMDRITTTLREFFTGINMIRAFNNQDFEEQRTNQTFKNYAERMSKVNRIFAWIT PVAFLLMGVVYASILWFGGNLVAVGTLQIGTVTAVIEYTLLTLAYLMIAAMVLVVIPRSV ASLNRLQEVLSEEIEISDPHTEATIAYHPEKALICFDHVTFQYTETADPVLENVSFFIPK GKTTAIVGATGAGKSTLVKLLLRINEVTAGTISYSGTDIRSLSQQTIRKVISYVPQKAFL FSGTILSNLLMGNAKATTEEIRTALEISQSSEFIDSLPQGIESFVAQGGSNYSGGQKQRM CIARALIKPADVYIFDDSFSALDYKTDAALRAALHAQMSDKTLLIVAQRLSTIMNADNII VLDEGRIVGQGTHADLLTTNSYYQDFAKSQGILPK >gi|307679288|gb|GL456439.1| GENE 4 5736 - 7469 207 577 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 338 563 2 230 245 84 28 2e-15 MIKPEHPIFYGLMICSLIGNLLIVAMTYIMAIGIDNLLEAIKRVGLKGMTLPLVEEALLG PVLLLILFSIISSITSFIQERAMASLSERVTLRIRKEVTKKFKTLPMAFFDNHQVGDIIS RSTTGLNQLSQVLLTGINQFFTSVVTILFAGIMLFYIDAKLTILVLLLIGGSTFMTTKIA NKNKVFADQSQAELGQLNNKMEEYLAGNLVTKTFNQQQNAEKTIAAVNQQHYRAFKKAQF LNFAIYPAIRFINQLAFIISAILGAMLVLSGGITIGFLQAYLQYINQISEPISTASYVIN SIQAAMASIDRIFVILDEADEQPEATHLETISSPKGAIEFKNVQFGYTPEKILMKNVDFS VQPKKTVAIVGPTGAGKTTLVNLLMRFYEINQGAITFDGIDITKLSRQNLRNLFGMVLQN TWLFEGTVADNIAYGKKDASREEIIEAAKIAQCDHFIRTLPQGYDTIISSENGALSQGQQ QLLTIARIILANPPVVILDEATSSVDTRTEAHIQKAMETVTENRTSFVIAHRLSTIENAD LILVMKNGDIIEKGTHQELLQAPTLYASLYNSQFQTT >gi|307679288|gb|GL456439.1| GENE 5 7523 - 8527 1422 334 aa, chain - ## HITS:1 COG:SPy2207 KEGG:ns NR:ns ## COG: SPy2207 COG0180 # Protein_GI_number: 15675940 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 4 334 6 340 340 443 67.0 1e-124 MNTILTGDRPTGKLHLGHYVGSLKKRVEMQADPTNQLFVMIADLQALTDNAKNPEKVSAN VLEVALDYLAVGLDPTKTTIFIQSQIPQLAELTMYYLNLVTTSRVRRNPTVKAEIEQKKF GEGVPTGFFIYPVSQAADITAFQANLVPVGEDQKPMLEQAQEIVHSFNQTYGEVLVRPEA VLPPKGMGRLPGIDGNGKMSKSLGNGIYLSDPAEVVQKKVMSMYTDPNHIRIEDPGQVEG NMVFTYLDVFGKEKEYIEELKEHYRHGGLGDVKIKRYLIDVLEEELAPIRRRREELAKNP EAIMEMLHKGSLAAEKVAAQTLTEVKKAMGIQYF >gi|307679288|gb|GL456439.1| GENE 6 8689 - 12468 3708 1259 aa, chain - ## HITS:1 COG:no KEGG:EF2229 NR:ns ## KEGG: EF2229 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 1259 1 1259 1259 2345 98.0 0 MRKKAYFKSVTIFLSILLVFSQLQLFSLPAYGETVSDQPLLFRSVGVAQNGTTYYVDGEG GNNANDGQSPASAWRDFEKVNQTEFQPGDHLLLNAQSTWNNQLLHPKGNGTAAQKIVIDF YDTNDKGETIFETTRRPIINGGGTYSTGTFKRAISGAVQLVNQEYWDISNLEVTNTPELD NLEGYKKPGDAQRAGILVLGYEQNRTFNSVTIRNNYVHDVQTEYYLNLSRNTATKRLKAV GGIIVLGSWFDENGNVVTAANDHRTTTGFNDILIENNVIQRVGLEGIRTKADSDTSRGNT FYKTFSNITIRNNYLEDIAGDGIVLSEAKSGGVVEGNVAVRMCNADYGTQNYAGVWAMSV DDGLFQYNEVYGIKYGFNDAEAYDVDMQSNNVIYQYNYSHHNTGGFLLLMSDQKNSVIRY NISANDGGGNRGTGKDNPGGAGGYNYKEQSIFHYWVKNDGAAMPTIHNNTIYIGDGISTS LFGEGNSSDNSGTVANFYNNILYKEGTGQLKFLSNYPTNGTQPIERKMVDNPEKYFKNNV IWPKEIATEKSGATVEKLVSSGNIFEKPQLEITDNPEKVKELAEQEFTTLKPTKDNVVEF TSKERLRQRAQMFQLKETSPAIGKGLSEVNSAAEDFFGNSLKNKVLDIGAQQASTIEKSI RYQNQVLEISSATGVYPNLPEQVELTYEEVVNEEVVATGKKEFKLQWEAIPQEKINTAGT IEVAATVIGLPIDAVKVTAKVSFEGELGEGKDTVKLKTAQTAYVQKSDGNRAYSAIAGGT AAISSGDAYKYPYGVNYTGNYALKLKNASSAGYNRRIYVEIDTQELKNYQSLKSANLELN VMRYDAWNGAGNTNDERLKNTQFQVDVYGTDTNWMSNTITWNNGPNNLNVPNEEFIARQS FTNSSIMNNQNTISIDISNYLRKLIQSGEKIPAKLSFLLAITDSRLPGYDSDNAGFDAFS KEGAQKAYQDFLAGKLTLPTGQQLTEDSLAPKIVLSNVFEVKHESIEVTTEAGQAPKLPE KTTIFYSDGSQREVTVNWSEVPASSYQKEGTFTVVGRAAGVSMPIIANVKVTAKHIVGFK ELPTLDRLTGTSRGELNLPTEVIAKLDDGSETKLKVISWDDDVSNYSPSSPPGTYQFPAA VEEKIGIANPDERKIFQVVQTHAIPERIQFATETATIKSGENYQIQSKVIGQAPHTETDA WSSQVTYELVTPDDGNTVSVDENGLIRTEATTAAGNYQIKVTSKVLPIVTAQFSIKVTK >gi|307679288|gb|GL456439.1| GENE 7 12479 - 13447 891 322 aa, chain - ## HITS:1 COG:no KEGG:EF2230 NR:ns ## KEGG: EF2230 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 322 1 322 322 518 98.0 1e-145 MKKKIIILSSFLIGAIFVLVIFTTSQQSMINNEAIQVEELIVYGDKNMNRVAKQFSDQNN LTSFGKNFWRKTYHGKSPTQELLKVATEDLVQHKMIKQLATELEIVHSQTFGQEKKEWQD QKSSLTLWQFLDAKDQQLQDQIKEKLMEKEKPTQKELRQAFEQLDDKYKKTDYFVEAIEI PTFSGKQAELEKIAEAISPNLSYEETLLEWQNKLPNLVIESYQLKSAEIQKEDIYSLSVG EILSEKAVGTVVKGYHENQYFYIFNKEGGQLLQFEEAPQFGKNAYINTRYKEKLATYQQA TKVDLLEKDREKFFQNYQNKNS >gi|307679288|gb|GL456439.1| GENE 8 13548 - 14219 428 223 aa, chain - ## HITS:1 COG:no KEGG:EF2231 NR:ns ## KEGG: EF2231 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 223 1 223 223 367 99.0 1e-100 MFTKQTFDNNIYMKIFRWLYILFIGNLGLLLVNIPFFIAVISLDIDPRNLPLFVVTLLPM GAGMIALLGLIDTFKEEKELDPFKTFFQKFRQFGLRGFLISLLGLGSSIISVTDIFFFAK TTIGKWFIPLMVLLLIFGLAIMLNAWYFQVRNPQASFKDVFRISIYYGLRKWYVSCLNVF LLFSMFAMMFLKPQFGFVVTPVLFLGIIYLNTGKLHEKQKKNK >gi|307679288|gb|GL456439.1| GENE 9 14232 - 15110 859 292 aa, chain - ## HITS:1 COG:lin0219 KEGG:ns NR:ns ## COG: lin0219 COG0395 # Protein_GI_number: 16799296 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Listeria innocua # 27 291 17 281 282 211 42.0 9e-55 MEATFSKKENTRKAKTKKAEKVTPGGILVIILLTLLALITLVPFIWMVSASFKTNNEVFT IPIQWIPKSWHPENYSVIWERIPLLTFFKNTLFLSIVITIIQLFTSSFAAYGFSKMNFRG RDTLFITYIATIAIPWQSYMIPQFIMMRQLGLTDTLWSLVLLQAFNAFGVFLLKQYYSSI PDSLCESARIDGLSEWGIYWKIILPLTKPALASLTIITFVNTWNDYMGPFIYLSSTENKT IQLGLKMFVGLFDAEYALIMAASVVSILPVGIVFLAMQKYFVEGIATSGMKN >gi|307679288|gb|GL456439.1| GENE 10 15122 - 16024 549 300 aa, chain - ## HITS:1 COG:lin0760 KEGG:ns NR:ns ## COG: lin0760 COG1175 # Protein_GI_number: 16799834 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Listeria innocua # 21 295 17 291 296 220 45.0 3e-57 MEITSKTKTANKLRRKNTWTALSFIAPNFIGFFLFTLIPVICSLILAFMSWDSFSTPEFV GMKNFTKMIHDDTFWISLKQTFIYTIGVVPLTLICSLGLAILLNRKIRGMKFFRTAFFFP YVTSLVAIAVVWNMLFHPTMGPINQFLKLFIENPPGWTSSSTWALPAIIIVSVWRFMGYY MILYLAGLQSVPRELYEAASMDGAGKWNQFLNVTLPSLRPTTFFVTIMLVINCFKVFDLV QVMTGGGPGRATNVLVYEIYNEAFVKFNFGYASAIAMVLFIIVLAITVAQFKWNQHQEKV >gi|307679288|gb|GL456439.1| GENE 11 16175 - 17452 1730 425 aa, chain - ## HITS:1 COG:BH1864 KEGG:ns NR:ns ## COG: BH1864 COG1653 # Protein_GI_number: 15614427 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus halodurans # 13 350 12 364 461 106 25.0 1e-22 MKFWKKGLTAAALLAVAAVTLTACGGSSEKKATEKSEDGKTKLTVTTWNYDTTPEFEKLF RAFEAENPDITIEPVDIASDDYDTKVTTMLSSGDTTDILTMKNLLSYSNYALRNQLVDLT DHVKDLDIAPAKASYEMYEIDGKTYAQPYRTDFWVLYYNKKMFDEAGIAYPDNLTWDEYE ALAKKLSKPEEQVYGAYQHTWRSTVQAIAAAQNNANLIEPKYNYMETYYDRALRMQKDQS QMDFGTAKSTKVTYQSQFENSKAAMMYMGSWYMGTLLTNIDDGKTNVEWGIAEIPQQEKG KATTFGSPTSFAINKNSKKQKAAQKFLDFASGKEGAKLLAEVGVVPSYKTDEIDKIYFAR KGMPSDEVSQKAFNPDTINLEFPSDKNGAAIDKVLQEEHDLIMVGDEKPKDGIANMEKRV KAEID >gi|307679288|gb|GL456439.1| GENE 12 17502 - 18644 1182 380 aa, chain - ## HITS:1 COG:no KEGG:EF2235 NR:ns ## KEGG: EF2235 # Name: not_defined # Def: glucuronyl hydrolase, putative # Organism: E.faecalis # Pathway: not_defined # 1 380 1 380 380 754 99.0 0 MTENGQIEWLPKQISFALNKVRGNLETFKELVPPAASLNQIYYPEENIDWTASFWPGMLF LAKELTNSTEFDEVIATQMASFQHRLDEQIELETHDIGFLYILTAIADYQVNGHEASKEM ALQAADLLMKRYSPKAKIIQAWGNLDDPEQRGRMIIDCLMNLPLLYFAAKMTGKQEYYEA AYNHAKQTQKYIVRENHTTFHTYYFDTETGEALYGKTQQGYSDDSCWARGQAWGIYGFTL SYLYTGDSSFLETAKNVADYFIQELPEDKICYWDLIFNEGSEEERDSSSAAIAACGLLEL SRQLPLNDEKHGYYEKVALELLQALAEKYTTVLRPESNGLLLHGVYDKKTNTGVDECMIW GDYFYLEALTRLAKSWYSFW >gi|307679288|gb|GL456439.1| GENE 13 18660 - 20459 1486 599 aa, chain - ## HITS:1 COG:SMb20536 KEGG:ns NR:ns ## COG: SMb20536 COG4289 # Protein_GI_number: 16264263 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Sinorhizobium meliloti # 57 567 61 572 617 387 38.0 1e-107 MIQPRIRQNPFETYEEVAEGFEDLLAPLELFFDREYQGHLDLGTHGTVYSKGTRDAEAFL RPLWGLGPYVTQNESEYLNDFLTGIIEGTDPESSSYWGKTKDYDQLIVEMAALSTFLLLN KEKTWDQLTKEQQNNLHSWLIQANENIIPPNNWHFFRVLLNLAMKHCEMPYSKEQIAVDL AVIDRFYVGNGWYYDGVETQVDYYVSFAIHYYSLLYCRFAPEDTARVAIMKERATLFAQE FKYWFTQPGEAIPFGRSLTYRFAQVSFFSALVFADVEALPWGEIKGLISRHLHQWMNKDI FTTDGLLSVGYDYQNMVFAEGYNGPGSPYWAFKTFILLAVPKDHPYWQAETQPISFPEKH LPSPESRNYYQVNDAGTHGLMFPAGQFINYQAHAHDKYSKFVYSSHFGFSTIKSDYWYYE GAYDNCLALAEDDHYFRTKGLDDQYEILDDRIIHQWHPWSDVAIKTTIVPLEGQHLRIHE IETQRALVAYEGGFSIPLFDEKVTCVSDQMAEVKNAKGVSKVENINGFSEAAIIRTEPNT NLLYPLTELPYLKANLSKGKHLLISLVTGVLPNEQIEPVKVRLKENQLLVEEKVVILGN >gi|307679288|gb|GL456439.1| GENE 14 20440 - 20826 292 128 aa, chain - ## HITS:1 COG:no KEGG:EF2237 NR:ns ## KEGG: EF2237 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 128 1 128 128 208 100.0 5e-53 MKRFSFFLLILLALTGCKSGEKEFDEESLQNLKETAQSYSETELQNGDVRLNEYISLKGE IVESDSRSSLIKKGDRFILKSGSSKYQVFNEQKKKLKIGDEVTVYGEYYGFLKGTLIESE ENHDSATN >gi|307679288|gb|GL456439.1| GENE 15 21003 - 22064 1137 353 aa, chain + ## HITS:1 COG:SP1854 KEGG:ns NR:ns ## COG: SP1854 COG1609 # Protein_GI_number: 15901682 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 1 347 1 331 335 195 35.0 1e-49 MATITDIAKVANVSISTVSRVLNYDPNLSVTEETKRKIFEAAETLNYTKYKTKNKNKQQE QLTPNLSVQTAPQEPSIAVVQWRSDDEELTDIYYMSIRLGAEKRAEELGYNILKVSQLEQ HNLQGIDGILAIGKFTQKTLQELQQLHPNLCVIGSNFPLEEFDSVNTDFYQATEIALTHL LELGHEKIAFIGAEESENMYGFRRYKTPTTNAYLDIMQHYHLFNEDYFILKENGMLDVKT GEQLTEEALEKWGNDLPTAILAYNDAFAIGVIHTLAAHGIKVPEEISVMGINDISISQYV SPPLSSVHAFTEEMGETGINLLHKRIQMPSIPRRVLLNTELVVRQSTTSPRQK >gi|307679288|gb|GL456439.1| GENE 16 22105 - 22938 887 277 aa, chain - ## HITS:1 COG:no KEGG:EF2239 NR:ns ## KEGG: EF2239 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 277 1 277 277 563 99.0 1e-159 MTCISLSILNQEQEVRKAKIDDSDSLKELTITGKDFVCLAARDCQLQDGDVIQVCLDTPN TYLMVKLDATLDSSLIYVPEQKWTFPITKNENAIEARAAYRFETKKPYISVRIATKEEIK SYRNWALNPHDLQHFTGAYPHASANVETRNDATFFACNAIDGTFANLYHGPYPYQSWGIN QQLDAALKIEFGREVLLDKVILTLRADFPHDNYWQQVTLKFSDGTHEVFKTVKTEQRQSF TFAKRAAEWVILTELIQADEPSPFPALTQIELFGQNK >gi|307679288|gb|GL456439.1| GENE 17 22977 - 23135 73 52 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315170354|gb|EFU14371.1| ## NR: gi|315170354|gb|EFU14371.1| hypothetical protein HMPREF9518_02075 [Enterococcus faecalis TX1342] # 7 52 1 46 46 70 97.0 3e-11 MGHQSTLVDVLLFYCVQKEQNQNLTFHSEYQMLFFYRNKAKVIILVKNRLIY >gi|307679288|gb|GL456439.1| GENE 18 23146 - 23451 344 101 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256853690|ref|ZP_05559055.1| ## NR: gi|256853690|ref|ZP_05559055.1| conserved hypothetical protein [Enterococcus faecalis T8] PTS system, Lactose/Cellobiose specific IIB subunit [Enterococcus faecalis PC1.1] PTS system, Lactose/Cellobiose specific IIB subunit [Enterococcus faecalis TUSoD Ef11] conserved hypothetical protein [Enterococcus faecalis T8] PTS system, Lactose/Cellobiose specific IIB subunit [Enterococcus faecalis PC1.1] PTS system, Lactose/Cellobiose specific IIB subunit [Enterococcus faecalis TUSoD Ef11] # 1 101 1 101 101 174 100.0 1e-42 MSKNILIICETGISASLLVSKLLEAIREKELSYDLDYAPVCRIEEKLGYKEYDVLMLTPQ VARVKEKVEKYLEGCQGQVVFIDQEDFRYMNTEKILASIEK >gi|307679288|gb|GL456439.1| GENE 19 23479 - 25074 1326 531 aa, chain - ## HITS:1 COG:BH2222 KEGG:ns NR:ns ## COG: BH2222 COG4146 # Protein_GI_number: 15614785 # Func_class: R General function prediction only # Function: Predicted symporter # Organism: Bacillus halodurans # 6 530 6 528 580 436 47.0 1e-122 MNLFSIISFLVIVICVWIFAYSRSRSVDTSGSEGFFMGGRSLTALPIAGSIIMTNLSTEQ IVGQNGQSYHAGMEVMAWEVTAAIAIVALAVIFLPKYFKYGINTVSDFIEIRYDTVTKRI ISILFIVTYMISFLPVVLYSGSLVFNKIFHIDELLGVEPIVAIILVAMVIGIVGILYLLI GGLSLSANSDSIYGVGLLVCGLLVPILGLMKLGDGSFIGGIEQVVENTPWLLNSVGAIDS AVVPWPTLFTGMLFNNLYFWCTNQMIVQKALSGKNLAEAQKGAFLVGIFKVFGALFLVFP GIVARNLFGDALMSNPDNAYPYLVTEVLPKMLFGIFAAVIFGAILSSFAGALNATSTLFS LDFYKPIINKKADDKQIARAGKTVTVIVGIISIIVAPFISFAPAGLYQFVQEFNGLYNMP LLVIILFAFYSKKATAFGAKMTIAIHIVLYALSKVFLKDIHFLYVLSLLFFLDILILIVV SKIKPDGEFVLNSFDTKVNIEPWKHTKLVASILVVVVILTYVAFSPIGFAR >gi|307679288|gb|GL456439.1| GENE 20 25098 - 25988 1073 296 aa, chain - ## HITS:1 COG:STM4424 KEGG:ns NR:ns ## COG: STM4424 COG1082 # Protein_GI_number: 16767670 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate isomerases/epimerases # Organism: Salmonella typhimurium LT2 # 5 290 13 298 306 308 50.0 7e-84 MANQIQLAIAPIAWTNDDMPELGSENTFEQCVSEMALAGFKGTEIGNKYPKDPQVLKQYL DIRGLKVASAWFSTFLTTKPFEETAEDFKKHRDFLHAMDAKVIVVAEQGHSIQGIMTAPV FNEKPIFSDEEWQKLAEGLEKLGDLAHEKGMEIVYHHHMGTGVQTTEEINRLMKMTNPTK VKLLFDTGHLVFSGEDPIAIYQRYQDRIKHIHFKDIRQQMAEEVRTEEDSFLKAVKKGVF TVPGDGMIDFKPIWSAIDESGYEGWIVVEAEQDPAKANPFEYAVKARNYIRKVTDL >gi|307679288|gb|GL456439.1| GENE 21 26010 - 27029 955 339 aa, chain - ## HITS:1 COG:BH2220 KEGG:ns NR:ns ## COG: BH2220 COG0673 # Protein_GI_number: 15614783 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Bacillus halodurans # 1 339 1 339 345 394 51.0 1e-110 MENIRVGIVGLGRLGKVHAKNLSSAVSGCELTAACSLVESELAFAQKELGVKCTFSSYEE MVQSAVIDAVFIVSPSGFHCEQVRLAMENGKHVFTEKPLGIEIEDIKKTQEVIEKYPEQV FMLGFMRRYDESYQYAKKMVEDGEIGEVTLIRCYGIDPSDGLESFVKFAMNNDSGGLFLD MAIHDIDLVRWFTGQEVEQVWAIGKNAAYPELDQVGELETGAAMMSLKDKTMALLVAGRN ATHGYHVETEIMGTKGMLRVAQVPEKNLVTVMNNQGVVRPCSQNFPERFREAFIREAQEF ISCIQEKRQPAVNAEDGLQSTKIALACQESFDTNRLVQL >gi|307679288|gb|GL456439.1| GENE 22 27053 - 28060 906 335 aa, chain - ## HITS:1 COG:BS_iolG KEGG:ns NR:ns ## COG: BS_iolG COG0673 # Protein_GI_number: 16081021 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Bacillus subtilis # 1 333 1 336 344 363 51.0 1e-100 MKVKVGVIGTGAIGIEHINRINHKTQGAFVTAVSDINVEAASKIAEEIGAQFFKTGEELI ASEEVEVVVVTSWDPTHEKYVLEAIKHGKYVFCEKPLAMDAAGCRRIVDAEVAYGKKLVQ VGFMRRYDRGYIELKEAIESKQYGEALMLHCAHRNPSADENYKTPMAISNTAIHEIDVLR WLLAEDYASVQMILPKKTSHTHADLHDPQLLIFQTKSGVTIDLEIFVNCRFGYDIKCDVV FETAEVGMTDPAYTKIKAAEKNYTPISPDWQTRFLDAYDYEFKLWVDSIKNDKLVGPTTW DGYVAAITMMACHESRESGEKVMIEIDEQPALYTK >gi|307679288|gb|GL456439.1| GENE 23 28234 - 29691 1331 485 aa, chain - ## HITS:1 COG:BS_iolA KEGG:ns NR:ns ## COG: BS_iolA COG1012 # Protein_GI_number: 16081027 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Bacillus subtilis # 3 485 5 487 487 681 66.0 0 MTRFLKNYIGGRWVTSAATEFEEVVNPATEEALVNVPLSSEAETAEAIRVADEAFQTWKK VSVPVRGRYLFKLHHLLMTNKEELARLITLENGKSLSESLGEVQRGIENVEHAAGITNLI MGDSLSTAATDIEITNYRYPIGVVGGITPFNFPMMVPFWIFPMALAAGNTVVLKPSEKTP LLMEKIVELIEEAGFPSGVFNVVYGAHDVVNTLLRDPLVKGISFVGSKNVGEYVYKEGTK NLKRVQALTGAKNHVIVLKDANLDRAVKDIIGGSFGSAGERCMAASVIVVEETIADQFVE KFKAAAQTIKIGNGLEEGVFLGPVIRKEAQQRTFDYIQKGIDEGADLLLDGRENIPEKGY FVGPTIFDRVTMDMKIWQDEIFAPVASIVRVKNLEAAVTLTNQSEFANGSCLYTSNASAI RYFRENVDAGMLGINLGVPAPMAWFAFSGWKHSFYGDLHANGKDSVEFYTHRKVVTARYA PSEIN >gi|307679288|gb|GL456439.1| GENE 24 29731 - 30570 777 279 aa, chain - ## HITS:1 COG:lin0402 KEGG:ns NR:ns ## COG: lin0402 COG3718 # Protein_GI_number: 16799479 # Func_class: G Carbohydrate transport and metabolism # Function: Uncharacterized enzyme involved in inositol metabolism # Organism: Listeria innocua # 1 274 1 273 273 367 63.0 1e-101 MKKTLKHQPLIKELAPGVRQVQNIRKNNTDLQYIEFQVLELDNGAMYQEAGNELEICIVV LTGKINVKVSDKWYENLGKRTSVFEKIPTDSIYIPAKTSFELIATSDTVRLALCYSPAKK TLPVHVITAEENTVEKRGIYQNKRLVHNILPDNVDTASSLLVVEVYTEGGNFSSYPPHKH DQENLPDESYLEETYYHELNPEQGFVFQRVYTEDGSIDETMTVEHQNVVEVPKGYHPVGV PDGYTSYYLNVMAGPERIWKFHNEKKHEWILNRNELTNN >gi|307679288|gb|GL456439.1| GENE 25 30609 - 32525 1517 638 aa, chain - ## HITS:1 COG:BH2318 KEGG:ns NR:ns ## COG: BH2318 COG3962 # Protein_GI_number: 15614881 # Func_class: E Amino acid transport and metabolism # Function: Acetolactate synthase # Organism: Bacillus halodurans # 3 638 2 637 637 881 65.0 0 MEKTIRLTTAQALLKFLNQQYISIDGKETPYVEGIFHVYGHGNVLGIGQALEQAPGHLKS YSGKNEQGMAHAAIAFARQSLRKKIFAVSASAGPGSANLLTAAGTAFANNIPVLFLPADT FATRQPDPVLQQLEHESSVTFSTNDAFQAVSRYWDRINRPEQLMSALLRAFEVMTNPATT GPATICLPQDVESEAYDYPVEFFRKRVHYIDRRMPTIRELETASHLIKDSKHPVIIVGGG CKYSEAGESLQKISQVHQIPLVETHAGKSTVSWEFENNLGGLGILGTSAANKAVQQADLI IGIGTRYTDFTTASKSIFNFEKSKMININVSRPQTYKMEAFQIVGDARATLEGILPMIEG YRTAYGEKITELKNEWVKERERLKTTHFKRKGFDPEIKNHFTQDILNDYADSLNTTLTQT EVFVHLNDFVEDDAIVIGSAGSLPGDMQRLWNPVKENTYHLEYGYSCMGYEIAGAMGVRL ANPDQEVYALVGDGSFLMLHSELVSALQYDKKINIVLFNNSGFGCINNLQMENGGVSQGT EFRNTKGEIMNINYAKIAEGYGAKAYQVHSIEELKQAIVDAKNQTQSTLIEINVLPKTMT AGYDGSWWNVGVAEVSEKPAIQEAYQVKKEKLATARKY >gi|307679288|gb|GL456439.1| GENE 26 32536 - 33570 839 344 aa, chain - ## HITS:1 COG:lin0403 KEGG:ns NR:ns ## COG: lin0403 COG0524 # Protein_GI_number: 16799480 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Listeria innocua # 10 330 9 321 325 311 49.0 1e-84 MSYISFDQSKEFDLVLLGRVAIDFNPAYNEQVKEEFKPLKNVHMFEKFVGGSPANISVGI TKHGMKAGFIGKVSDDQFGEYVIDYFNEQGIDTSQISKAQHGEKLGLTFTEMLSPKESSI LMYRNQAADLQLSVEDIDEDYLKRSKALLISGTALAESPSREAVLKAVMLAKKNNVKIIF DIDYREYNWKNVDEIAIYYSIVAKESDIIMGSREEFDLTERLIQPNMTDNESAVFWHNCG AQIVVIKHGMKGSTAYTADHQQFSIKPFPVEARKGFGGGDGYAAGFLYGLFEGWEIIDCL EFGSAEASMMVKSNNCSDSLPTTQEVKEFIKLEKEIYGEMIARI >gi|307679288|gb|GL456439.1| GENE 27 33729 - 34745 818 338 aa, chain - ## HITS:1 COG:AGl777 KEGG:ns NR:ns ## COG: AGl777 COG1879 # Protein_GI_number: 15890504 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 300 1 302 340 129 29.0 1e-29 MAGTIKEIAEKAGVSRGTVDRALNNRGRINPEVAEKIKTIAKEMNYVPKKKKMAKEEPIK LGVVTQLAKSSFMIPIRSGLQAVIGDLKKRNIDCFLEEIDGVDEAAQLQALERLLGLGVK GIAIMPVDSVAIREKINQLTEQGIKVITFNSDIVGSKRQCFVGMDNFKSGKTAAGLLGML TKGEGDVLAITGYFGNSVNSLRVAGFVEELKQSFPQLKLTGVQSSFDSSDEVEKILSDTL ENYTNLKGVVVFSGGQAGIARVLKKRAGKDRPYVIIYDLTEKNIEMLKKNQVDFLIDQDG FTQGYRSLLLLANQLQNNKFMTEEMLFTDIIIKTKYNL >gi|307679288|gb|GL456439.1| GENE 28 34933 - 36768 2062 611 aa, chain - ## HITS:1 COG:SPy1053 KEGG:ns NR:ns ## COG: SPy1053 COG0481 # Protein_GI_number: 15675045 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane GTPase LepA # Organism: Streptococcus pyogenes M1 GAS # 1 610 1 610 610 1018 82.0 0 MNNKEMKARQEKIRNFSIIAHIDHGKSTLADRILEKTNTVSSREMQDQLLDSMDLERERG ITIKLNAIELNYTAKDGETYTFHLIDTPGHVDFTYEVSRSLAACEGAVLVVDAAQGIEAQ TLANVYLALDNDLEILPVINKIDLPAADPERVRTEIEDVIGIDASEAVLASAKAGIGIED ILEQVVEYVPAPSGDIEAPLKALIFDSIYDSYRGVVLNIRVIDGVVRPGDKIQMMSNGKT FDVTEVGVFSPKPIARDYLMVGDVGYITASIKTVQDTRVGDTVTLADNPAAEALPGYRKM NPMVYCGLYPIDTSRYNDLREALEKLQLNDAALQFEPETSQALGFGFRCGFLGLLHMDVV QERLEREFNLELITTAPSVIYHVNKTDGTTVVVDNPAEFPEPVTIESVEEPYVKAQIMVP NDYVGAVMELSQRKRGEFITMDYLDDYRVNVVYEIPLSEIVFDFFDKLKSSTKGYASLDY EMAGYRTSRLVKMDILLNAEKVDALSFIVHRDFAFERGKAIVEKLKKLIPRQQFEVPVQA AIGQKIVARSDIKALRKNVLAKCYGGDVSRKRKLLEKQKEGKKRMKQIGSVEVPQEAFMA VLKMDEDDQKK >gi|307679288|gb|GL456439.1| GENE 29 37015 - 38235 1175 406 aa, chain + ## HITS:1 COG:BH1812 KEGG:ns NR:ns ## COG: BH1812 COG4552 # Protein_GI_number: 15614375 # Func_class: R General function prediction only # Function: Predicted acetyltransferase involved in intracellular survival and related acetyltransferases # Organism: Bacillus halodurans # 15 406 7 386 386 184 32.0 3e-46 MDEQEFRKQLTLKPVEEEHIDQFNELLSYVFQVTEADIEESGFENKRAFIKSKQPILELS KVFGWFHENQLISQIAIYPCEVNIHGALYKMGGVTGVGTYPEYANHGLMKDLIQTALEEM RQDKQWISYLFPYNIPYYRRKGWEIMSDKLSFKIRDTQLPKTVPVPGMIERLAVDHPDVF DVYARFARQNHGALIRSAFNWEEYWRFENEEERTAAVYYGANQEPLGVLFYWVADEVFHI KEMFYLNQEARNGLWNFITAHFSMVYWVKGDIYKNEPLAFLLEDSQIKESIEPYYMARIV DVKAFLENFPFESTAKPFHFVVKDPVAEWNNGIFGLIWDENDQVTITDEPLGTAVHLDIQ TLTCLVMNYRRPSYLHRIERIDTDKETLNSLERIFPDQEAYFSDYF >gi|307679288|gb|GL456439.1| GENE 30 38259 - 38738 596 159 aa, chain + ## HITS:1 COG:MA3568 KEGG:ns NR:ns ## COG: MA3568 COG3613 # Protein_GI_number: 20092374 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside 2-deoxyribosyltransferase # Organism: Methanosarcina acetivorans str.C2A # 4 106 7 108 140 80 47.0 1e-15 MTKIYFAGPLFSQADLRYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALAD TENVLASDLLVALLDGPTIDAGVASEIGVAYAKGIPVVALYTDSRQQGADNHQKLDALNE VAENQFHYLNLYTVGLIKLNGRVVSSEEDLLEEIKQRLS >gi|307679288|gb|GL456439.1| GENE 31 38778 - 41384 3414 868 aa, chain - ## HITS:1 COG:L166407 KEGG:ns NR:ns ## COG: L166407 COG0542 # Protein_GI_number: 15673507 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATPases with chaperone activity, ATP-binding subunit # Organism: Lactococcus lactis # 1 867 1 867 867 1225 74.0 0 MNIEKMTTTLQEAIAEAQKVAVTRQHQEIDIAHLWKIFLQPNHFGRNFYTDAGLDVDAFE REVDNALDEYPSVAGGNVQYGQNLSQNLFHLLQEADSLREEFQDEFLSTEIVLLALMKLK NYRLTKYLMQQGITEKELRKNIEEMRGGDRVTSQNQEEQYKALEKYGVDLVQQVKAGKQD PIIGRDEEIRDVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVRKDVPENLKDKTIF SLDMGALIAGAKFRGEFEERLKAVLKEVKKSDGKIILFIDEIHNIVGAGKTEGSMDAGNL LKPMLARGELHLIGATTLDEYRQYMEKDKALERRFQKVLVKEPTVEDTISILRGLKERFE IHHGVNIHDNALVAAATLSDRYITDRFLPDKAIDLVDEASATIRVEMNSMPTELDQVTRR LMQLEIEEAALKKESDDASKKRLANLQEELADLREEANSMKMQWETEKEEVNAVSNKRAE IDKAKHELEDAENNYDLERAAVLRHGTIPQLEHELKELEEKNAKDNVKMVQESVTENEIA QVVGRLTGIPVTKLVEGEREKLMKLNETLHKRVIGQDEAVDAVSDAVIRSRAGLQDPNRP LGSFLFLGPTGVGKTELAKALAEDLFDSEDHMVRIDMSEYMEKHAVSRLVGAPPGYIGYE EGGQLTEAVRRNPYTIVLLDEIEKAHPDVFNILLQVLDDGRLTDSKGRVVDFKNTVLIMT SNIGSQLLLEGVTPEGTIPEEVENQVMNILKGHFKPEFLNRIDDTILFTPLSLDNVKGII GKMTAQLAHRLEQQEIVLEITDEAKTWIAENGYEPAYGARPLKRFITREVETPLAKEIVS GRVMPKTKVTISLLDNQLVFENEPIEEV >gi|307679288|gb|GL456439.1| GENE 32 41654 - 42025 418 123 aa, chain - ## HITS:1 COG:SA0890 KEGG:ns NR:ns ## COG: SA0890 COG2259 # Protein_GI_number: 15926624 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 7 117 4 115 118 73 41.0 1e-13 MDKQQRGIQVIRIWLGVTMLIHGVMKVTSLEDTLAFFASIGLPSLFVYGVAAIELIGGLF MIIGFLIPLVSVGFIAVLVGAIFSFGLASGFSGYEYELFLAITSLAILVSYADKKYLTLK LYF >gi|307679288|gb|GL456439.1| GENE 33 42209 - 43504 1713 431 aa, chain - ## HITS:1 COG:SPy0036 KEGG:ns NR:ns ## COG: SPy0036 COG0015 # Protein_GI_number: 15674278 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Streptococcus pyogenes M1 GAS # 1 430 1 430 430 715 81.0 0 MIDRYTRPEMGAIWTDENRYKAWLEVEILADEAWAELGEIPKEDVQKIRENASFDVARIL EIEAETRHDVVAFTRAVSETLGEERKWVHYGLTSTDVVDTAYGYLLKQANDILRKDLQTF TEIVGAKAKEYKHTVMMGRTHGVHAEPTTFGLKLALWYSEMKRNIERFEHAAKGVEAGKI SGAVGTFANISPFVEEYVCEHLGIRAQEISTQVLPRDLHAEYVSAMALIATSIEKFATEI RGLQKSETREVEEFFAKGQKGSSAMPHKRNPIGSENMTGLARVIRGHVITAFENVSLWHE RDISHSSAERIIIPDTTILLNYMLNRFGNIVKNLTVFPENMKRNMDATYGLIYSQRVLLK LIDHGMTREEAYDLVQPKTAYAWDHQTAFRPLLDADEKITSVLSKEELDDAFDYHYHLKN VDTIFERVGLG >gi|307679288|gb|GL456439.1| GENE 34 43547 - 44662 1286 371 aa, chain - ## HITS:1 COG:lin1886 KEGG:ns NR:ns ## COG: lin1886 COG0026 # Protein_GI_number: 16800952 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) # Organism: Listeria innocua # 20 370 19 373 374 356 47.0 4e-98 MNLDKPLLPGQVIGIIGGGHLAKMMALSAREMGFRVGVLDPQIDCPAAQVADWQLLGAYN DPEALEKLAKRAQVITYEFEHADVDALTAIQHLANIPQGTDILAITQDRLMEKSFLEDNN IVIAPYATIVSPTDIQEAIDGIGYPCILKNTRGEGRYVLHSTSDLAPSMNLLREGTCVLE AWIPYEKELSVLISGNGRGEFATFPVVETIKKERKLHETIAPARIDDEVSGELQRIAKVI AKAVGLVGTLSIEMFYTETGGIYVNKILPRPEDAGNFSIDACSFSQYDTHIRGLCNWPMP TIQLLSEAVTVNVFGNEAYETMDIINEHPDWHFHYYGHSEAKAQRAMGHITILTKEIDET LEEIKETKIWS >gi|307679288|gb|GL456439.1| GENE 35 44990 - 46309 432 439 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 18 438 15 428 447 171 27 1e-41 METKQLNTPQQTETPNGKAAVLGLQHLLAMYAGAVAVPLLIGTGLNFDSQQMTYLISIDI FMCGVATLLQLTVNKFFGIGLPVVLGCAIQAVAPLIMIGTNKGVGAIYGSIIASGIFVVL IAGFFSKIKRLFPPLVTGTVITVIGLTLIPVAVEKMGGGLATDKSFGDPKNLLLAFVTIA LIIVVQVWGRGFIKSIAVLIGLVGGTILAAFLGLVDLSPVGQATWFHFPQPFYFGKPTFD LSSIVLMIIISIVSMVESTGVYFALGDITGKKIGEDDLRRGYHAEGLAVILGGIFNTFPY TGFSQNVGLVQLSGIKTRRPIYFSAFFLIILGLLPKIGAMAQIIPEPVLGGGMLVMFGMV AVQGMRMLSKVDYSNDKNLLIIAISIGFGLGFNIMPTLFNKVPETVSMFTGNGIVMSSIT AIILNLLFNGLKETSESNE >gi|307679288|gb|GL456439.1| GENE 36 46312 - 46893 851 193 aa, chain - ## HITS:1 COG:SPy1136 KEGG:ns NR:ns ## COG: SPy1136 COG0503 # Protein_GI_number: 15675113 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Streptococcus pyogenes M1 GAS # 1 193 1 193 193 242 68.0 3e-64 MKELVERIKNDGRVLGEGVLKVDSFITHQVDPELMEAMGNRFAEVFAEAGITKVITIEAS GIAPALYAAQKLGVPMIFARKAKSLTMDEELLTASVYSFTKQVTSQISISRKFLSDADKV LIIDDFLANGQAAKGLVELCQQAGAKVEGIGIVIEKSFQDGRQLLEDMGLNVVSLARIAS LSEGTVTFLEEDA >gi|307679288|gb|GL456439.1| GENE 37 47276 - 47962 994 228 aa, chain - ## HITS:1 COG:no KEGG:EF2366 NR:ns ## KEGG: EF2366 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 228 1 228 228 405 100.0 1e-111 MSEKWIPEIMTPLKQDIVKMPEIIRQASGIKIFGRKIKSIIFTTDIAIIRNTDAQAVIAV YPFTPHPAITKGIIEAADIPVFSGVGGGLTQGMRSAYMSLFAEAQGSMGVVLNGPTPIET IKMVDEAIDIPIISTVTSIHTPIDEKLAAGVDMINISAGKDTAATVRYFRGKYPELPIIA TGGPTESSIHETIIAGANAITYTPPSNGELFSKKMKKYREQEKATDEE >gi|307679288|gb|GL456439.1| GENE 38 47982 - 48623 774 213 aa, chain - ## HITS:1 COG:L2183 KEGG:ns NR:ns ## COG: L2183 COG1705 # Protein_GI_number: 15673347 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Lactococcus lactis # 12 213 7 205 209 172 45.0 4e-43 MKWGINEVSNYQKKRKKQLNLPKLFLGVVVVGLAFVFSLSVLSDSDKGQSESVNRQNENI SKEEFVAEITPYARELQESYGVLPSIIMGQAVLESNFGQSQLASKYNNLFGIKAYGNQPK VNLETKEYVNEVWITIQGDFRVYDNWEESMRDHTKLFVDGVDWDPNLYEKVLLAKNYKEA AQALQDAGYATDPTYADKIIHVIEEYNLNKYDR >gi|307679288|gb|GL456439.1| GENE 39 48723 - 48941 247 72 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKYTIAGILSVIIMFGAVIFVFFGKKPVEESVHTSTETTVKSSTKIFESSTVSSTATTES STEITSVSSDES >gi|307679288|gb|GL456439.1| GENE 40 48962 - 49480 686 172 aa, chain - ## HITS:1 COG:no KEGG:EF2369 NR:ns ## KEGG: EF2369 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 172 1 172 172 313 100.0 1e-84 MHQVYVDIIVDAIIEQYQTEENFYSAYQIQAADWQAWKEGQFGLDNEVMQKIKNLFTDYE WMLTQKILRQTILFPEKRNLAVSEYKRLKTTIAKKWLQSDLGVVELIPNNKQEQEIAAGY IDLKVTLAYGEWGFDDIITFRLPATIQRQLEGSKVELLDWVNENLMDTYVGE >gi|307679288|gb|GL456439.1| GENE 41 49653 - 50612 1077 319 aa, chain + ## HITS:1 COG:CAC3400 KEGG:ns NR:ns ## COG: CAC3400 COG0673 # Protein_GI_number: 15896641 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Clostridium acetobutylicum # 7 317 5 315 322 319 49.0 5e-87 MTKKLYQWGIVGLGGIAHEFASTFKQETSQLAAVASRTLSKAEQFAADYSIPKAYGSYEE LLADETIDVVYIAVPNKQHAEHILKALQAGKHVLCEKAITMNAAELKQALAVAEKNDLIL AEAMTIFNMPLYDELRRLMDAGKFGQLKMIQAPFGSYKEPDPKNRFFNPDLAGGALLDIG TYAVSFARWFLSSQPDVLASSMVPFSTGVDEQSVTLLRNKENELATISLTFQAKMPKQGI VAFEDAYITITDYPRAHEAIVHYNDGTVETIVSGYSAEAMNYEIYNMVEAIKGTQPNRSL FFTTEVIDILDQMQKLWQN >gi|307679288|gb|GL456439.1| GENE 42 50660 - 51994 1524 444 aa, chain - ## HITS:1 COG:L0345 KEGG:ns NR:ns ## COG: L0345 COG0017 # Protein_GI_number: 15673810 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl/asparaginyl-tRNA synthetases # Organism: Lactococcus lactis # 4 444 5 447 447 666 72.0 0 MEQIQIIDSNKHVGETVKIGAWIANKRSSGKIAFLQLRDGTAFFQGVVFKPNFIEAFGEE AGTEKFQEIKHLSQETSVMVTGVIKEDSRSKFGYEMDITDLEVVGASEDYPITPKEHGTD FLMDHRHLWLRSSKQHAIMLVRNEIIRATYEFFNEQGFIKIDSPILTGSAPEGTTELFET DYFGQPAFLSQTGQLYAEAGAMAFGKVFTFGPTFRAEKSKTRRHLTEFWMIEPEMAYTTH EESLDIQEAYVKHLIKSVLKNQQYPLDVLERDTALLEKYVLEPFKRITYDDAIELLQKEE ANNDYDHIEWGEDFGSPHETFISNYYGVPTFILNYPKAIKAFYMKPHPTREDVVICADLI APEGYGEIIGGSERATDYDYLKEKVAEFGLSEEEYSWYLDLRKYGSVPHSGFGLGLERAV TFITGNEHIREAIPFPRMLNRIYP >gi|307679288|gb|GL456439.1| GENE 43 52029 - 53228 1201 399 aa, chain - ## HITS:1 COG:SP1544 KEGG:ns NR:ns ## COG: SP1544 COG0436 # Protein_GI_number: 15901387 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 390 1 390 395 527 67.0 1e-149 MNVSNRAQQLTPSVTLAAAAKAKALKAKGVDVLSLTVGEPDFVTPKNIQKAAIASIEDGR ASYYTPSGGIPELKQAIVSYVEREYQLRYQPKQVIVTDGAKYALYLLFQAILNVGDEVII PVPYWVSYGEQVKLAEGKPVFVSSTQEQSFKVSVAQLEAVRTDKTKAIILNSPSNPTGII YTEEELRQIGEWAVAHNILIIADDIYGRLVYNGHRFTPIATISEAIRQQTIIINGVSKTY AMTGWRIGFAVGDEKIIQAMTQLASQSTSNPVAVSQYAAIEALTGEQSTVEDMRQAFEKR LNHIYPKVAALPGVSLIKPEGAFYLFPNVKKTLEICGYDNVTNWVEDLLQEAHVALVTGE GFGAPEHVRMSYATDLMTLEKAIERMNDFIEKKRIQHNA >gi|307679288|gb|GL456439.1| GENE 44 53267 - 53773 531 168 aa, chain - ## HITS:1 COG:lin2012 KEGG:ns NR:ns ## COG: lin2012 COG5353 # Protein_GI_number: 16801078 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 32 160 35 165 173 75 36.0 4e-14 MEELEEKKEKKRITVLLTLLAILLAILVTIIIFFVRTNQPMAQAKKEATAIAKTSANLET VDKFYWFTRKNTYFTLTGKNDKGTEIIVIVPKSGEKVTVLNQKDGQTEQQITDIVAKAHP DESVMKATLGLYDKRPAWEVVTENDQGVLTYYLMSFDKGEEINVVKDI >gi|307679288|gb|GL456439.1| GENE 45 53861 - 56632 2537 923 aa, chain - ## HITS:1 COG:BH1691_2 KEGG:ns NR:ns ## COG: BH1691_2 COG1199 # Protein_GI_number: 15614254 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Bacillus halodurans # 255 921 36 716 716 310 30.0 7e-84 MKDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIANFATDVNPNQVVPKQIQSLTG ISNTQVQKAPYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTV ELAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK IAELSQQTARETSTFIQQTYEQMKKQVTPLNPAYQVVSGIALRKKEVPLFEETFYQTSTY PKTKKAKEKLFGERFAYRAEQSRMMNLVYDHFTEGTTKDLFIEAATGTGKTLGYLLPMSY LATPEKPVIISTVSIVLQNQLVEKDLPLVNQICQGKLRGIVIKSHRHYLDLQRFKATLNQ PTPQKQYALYQMGVLVWLLETETGDLDELQLTNLNHLFWKEVTHRGLDFLSKKDELYEVD FLRHLYKKVAQSNVLIVNHAFLAQESLRKQPLLPESPWLIIDEAHHLPDIASRMASERVN SVILKKQVTHFIEKEQLFVALQQIFQQFSEEQRFVKIYQQGLLDFVDEWQDFLFELHRLF SKTQKRIDHQELLLTKERIDYLSAAGEKHSQTLQLLLQELLTIQSKLQQTIMSQLETFSL ADRIVFVRLFQFFDEIERIHHCFTIYLDDWRPRWVKEYLPQNEDHGLIEIHDLEASLLPE TKWYPRYERIIYTSGTLKFGNNKKYLPQRLGLTEVTFKTLPTPYNYAENARVYVPEEAVA IQNASSYEMGQYISDTIEKLMAQEERSMLVLFTSHELLSTVYHQVQPRLLEKGQEVLAQG ISGSREKILKRFSNGKPNVLLGADSFWEGVDLPGTALQLLIVTRLPFENPKRPLVQAKYA YLEAEGIQPFAQEAVPKAALRLRQALGRLIRSEEDRGALLILDRRLVTAKYGKRLIKAFP KGLSVKEAPMPEILEELKEFLNK >gi|307679288|gb|GL456439.1| GENE 46 56831 - 58207 1189 458 aa, chain - ## HITS:1 COG:no KEGG:EF2376 NR:ns ## KEGG: EF2376 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 458 1 437 437 692 94.0 0 MTKTLETQPEEKTVFLCKETNPDFLGREIYADNVETPYNFYLIRKLYLAKEYQNLAEGEQ FFEALCESWDESEQFEELIVKKIYVYVETELMYYTVYFGSFEPTTRDLRSALKQWMYEIP TTKNKKTVRMNETNVQVVPQENQLTELAGEIAVLREMLTLLKENLASLNEAVNQTRNPVI SRQIKTIHLKRASPVIAAEQASLKVSEDTNLEQPDVNLSPDNRENQEGETTVATSEAVLP VNKLALEEPAKEPVLSETVPIKEAQPEKKQENQQSTAAKPLFTFPQETEKSSLNSVNKSA EKEEEQKPEKEAVSMESEKENSSSRTIPADFQRQLDELEEEIYRRFMSRQLEDTDGNQAV PKITIEKRQLEAQMFEAKAFSQSFKQVQKKKAGDVRICNQLSCMKLEKGLDKFLDEVTEY VEKRTLFNKKVRCPLPVIRELEGYGQLNQYMQKILDCY >gi|307679288|gb|GL456439.1| GENE 47 58426 - 59883 1651 485 aa, chain - ## HITS:1 COG:L119780 KEGG:ns NR:ns ## COG: L119780 COG0531 # Protein_GI_number: 15673092 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Lactococcus lactis # 1 477 1 477 488 682 76.0 0 MDKKQLRWFTVGLIAFNMVWGLGNVVNNYAQQGISVVTSWLLILVLYFIPYALIVGQLGS TFKDSNGGVSSWVQNTSTKRLAYYAAWTYWVVHIPYLAQKPQAILIALGWAVQGNGNLVN TMPIVTVSFISLIIFLVFLLLSTKGLTTLKVIGGLAGTAMFVMSILFILLAVGAPFINST VEFATPNMSQVSTYIPKFDFSYFTTVSMLVFAVGGAEKISPYVNATKNPAKEFPKGMIFL AAMVGLSAVLGSFAMGMLFSSDNIPKDLMANGAYSAFQKLGAYYGVGNLLMIVYALTNTV GQVAALAFSIDAPLKILLAEADPEFVPSWLRKRTKKGTLINGYLLTGILVSIIIALPMFG LKDMNEVVKWLTNLNSVVMPMRYLWVFFAYMLLNKAYKQFNSEYKFVKNPKIGFVFGLWC FLFTAFACILGMVPKFEYASDPQGWLFQLASNIVTPIVLILLGMILPAIARREKKDTILP IDSAE >gi|307679288|gb|GL456439.1| GENE 48 60095 - 64450 4578 1451 aa, chain - ## HITS:1 COG:lin1357 KEGG:ns NR:ns ## COG: lin1357 COG2176 # Protein_GI_number: 16800425 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit (gram-positive type) # Organism: Listeria innocua # 3 1448 6 1444 1444 1832 61.0 0 MTEKARDLFDKLMTQIQLDDTAKEHPLIQNGRIDKVIVHQQSRLWEFHLSFDELMPVMLY QTFMQQLELAFQQIAQVSVQITTNQTTFTEEQLTDYWQLALLNSQCNTPLVQKVLKTQTP QFEDRKIILPVDNEAVIPYLKQQYLPIIEELYFSYGFPKFHIEPKMDQQQAAEVLKKFEE QKLEQAAAFQQQAAESLVKHEQMKKEKQQQAPAFDGPIRLGRNIPNDEPIMPMGNILEEE RRITIEGFIFDKEVRELRSKRKILILKITDYTSSFVVKKFSNGEKDEQVFDAIQPQSWIR VRGSVQEDTFMRDLVMNAQDLMEVAHAPRKDYAPEGEKRVELHMHSNMSTMDATNKVGDL VAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILYGVEANIVDDGVPIAYNEEHIE LTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVIETFEQFIDPGHPLSQTTINLTGI TDEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLE LSRFLYPHFKSHRLNTLSKKFGVNLEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHDD LNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLISMSNVDYFFRVPRIPRSQLSKLRE GLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEVMPKPVYAPLIEQELVKNEADLEE IISNLVKIGDELGKLVVATGNVHYLNEEDAIYRKILVGSMGGANPLNRHSLPKVHFRTTD EMLTEFQFLGQDVAKRIVVENPNKVADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRAR ELYGDPLPEIVEKRLEKELNSINGNGFSVIYLISQKLVHKSNEDGYLVGSRGSVGSSFVA TMTGITEVNPLAPHYYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFET FLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGYER DHNLHLRGAEIDRLAKGSTGVKRTTGQHPGGIIVIPDYMDVYDFTPIQYPADDQEAEWKT THFDFHSIHDNILKLDILGHDDPTVIRMLQDLSGIEPKTIPTDDPEVMRIFEGPDVLGVD AEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHGTDVWLGNAEELIRRG EANLAEVIGCRDDIMVYLIHAGLDSGMAFKIMETVRKGQWNKIPDELRDTYLNAMKENNV PDWYIDSCSKIKYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQ GKEAVKARMKEITDKGMDASTKEKNLLTVLELCNEMLERGYKFGMIDLYKSDAENFVIEG DTLIAPFRAVPSLGLNVAKAIVAAREEQPFLSKEDLATRGKVSKTLIEYMNENGVLKDLP DENQLSLFDML >gi|307679288|gb|GL456439.1| GENE 49 64701 - 66419 2288 572 aa, chain - ## HITS:1 COG:lin1356 KEGG:ns NR:ns ## COG: lin1356 COG0442 # Protein_GI_number: 16800424 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Prolyl-tRNA synthetase # Organism: Listeria innocua # 1 564 1 564 568 727 62.0 0 MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREE FEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRD EINSYKRLPLNLYQIQTKYRDEKRPRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKA YSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTICYSTESDYAANLEMATSLY TPKKSHETQLDLEKIATPEVGTIAEVANFFEVEPQRIIKSVLFIADEEPVMVLVRGDHDV NDVKLKNFLGADFLDEATEEDARRVLGAGFGSIGPVNVAEDVKIYADLAVQDLANAIVGA NEDGYHLTNVNPDRDFQPISYEDLRFVQEGDPSPDGNGVLAFTKGIEIGHIFKLGTRYSD AMGATVLDENGREKSVIMGCYGIGVSRLLSAIVEQNADERGINWPTGIAPFDLHVVQMNV KDEYQTKLSQEVEAMMTEAGYEVLVDDRNERAGVKFADADLIGCPIRITVGKKAVDGVVE VKIKRTGEMLEVRKEELESTLSILMNTTSEVE >gi|307679288|gb|GL456439.1| GENE 50 66491 - 67759 1452 422 aa, chain - ## HITS:1 COG:SP0263 KEGG:ns NR:ns ## COG: SP0263 COG0750 # Protein_GI_number: 15900197 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane-associated Zn-dependent proteases 1 # Organism: Streptococcus pneumoniae TIGR4 # 1 422 1 418 419 413 51.0 1e-115 MKTIITFIIVFGILVLVHEFGHFYFAKRAGILVREFAIGMGPKIFAHRGKDGTTYTIRLL PIGGYVRMAGMGEDMTEITPGMPLSVELNAVGNVVKINTSKKVQLPHSIPMEVVDFDLEK ELFIKGYVNGNEEEETVYKVDHDATIIESDATEVRIAPLDVQFQSAKLSQRILTNFAGPM NNFILGFILFTLAVFLQGGVTDLNTNQIGQVIPNGPAAEAGLKENDKVLSINNQKIKKYE DFTTIVQKNPEKPLTFVVERNGKEEQLTVTPEKQKVEKQTIGKVGVYPYMKTDLPSKLMG GIQDTLNSTTQIFKALGSLFTGFSLNKLGGPVMMFKLSEEASNAGVSTVVFLMAMLSMNL GIINLLPIPALDGGKIVLNIIEGVRGKPISPEKEGIITLIGFGFVMVLMVLVTWNDIQRF FF >gi|307679288|gb|GL456439.1| GENE 51 67806 - 67886 64 26 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAIVLSKQLHWFIGKGTEQVLRDFPM >gi|307679288|gb|GL456439.1| GENE 52 68176 - 68955 250 259 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 8 246 4 238 242 100 32 2e-20 MYGELHGKVAIVTGAATGLGLFITLRYILEGMNVVADYVGELPKEFEDVQAKHADRVKFV KADVSNEEDIKALAETALKEFGHVDIWVNNAGVEASFPTIDMPLKEWQRVIDVNLNGVFL ASREALRIFRDQKIKGSIINMSSVHQRIPWPTFAHYAASKGATEMFTKTIALEYAEYGIR ANCIAPGAINTPINAEKFSDPEQLKQTTSMVPMGIIGKPNQVAAAAAWLASDESSYVTGT TLFVDGGMSLYPSFQHGAG >gi|307679288|gb|GL456439.1| GENE 53 69040 - 69642 639 200 aa, chain + ## HITS:1 COG:HI0522 KEGG:ns NR:ns ## COG: HI0522 COG2364 # Protein_GI_number: 16272466 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Haemophilus influenzae # 5 198 24 211 218 80 26.0 2e-15 MKLVKNVLLILIGLVIIGIGASTLRVAGLGVDPFTAMNIGLSSMFGMQLGIFQIIVNAFI LFYVYLKNKKAIGLGTILNMLLVGILIQQISTWLQPYANSLGGSTIGKLLSLFVGVLIFT FGCALYMATDQGESPYDAIAPTICQQTNKPYASVRKAQDLLVLLIGFIAGGPIGIGTIIC AFGAGPLISFWNKLLQPLVK Prediction of potential genes in microbial genomes Time: Tue Jul 5 19:56:17 2011 Seq name: gi|307679287|gb|GL456440.1| Enterococcus faecalis TX0411 genomic scaffold Scfld131, whole genome shotgun sequence Length of sequence - 423339 bp Number of predicted genes - 450, with homology - 431 Number of transcription units - 195, operones - 103 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 3 - 92 104 ## EF1070 UDP-glucose 4-epimerase 2 1 Op 2 1/0.324 + CDS 104 - 1597 1646 ## COG4468 Galactose-1-phosphate uridyltransferase 3 1 Op 3 . + CDS 1604 - 2608 872 ## COG1609 Transcriptional regulators + Term 2609 - 2656 8.2 4 2 Op 1 . + CDS 2689 - 3183 408 ## EF1073 hypothetical protein 5 2 Op 2 . + CDS 3247 - 3510 344 ## EF1074 hypothetical protein + Term 3522 - 3555 1.4 6 3 Op 1 . + CDS 3583 - 4089 553 ## EF1075 acetyltransferase 7 3 Op 2 6/0.027 + CDS 4138 - 4578 473 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 4731 - 4759 -0.9 + Prom 4584 - 4643 10.1 8 4 Tu 1 . + CDS 4771 - 5925 1291 ## COG0477 Permeases of the major facilitator superfamily + Prom 5996 - 6055 7.9 9 5 Op 1 . + CDS 6076 - 7392 1383 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair 10 5 Op 2 . + CDS 7397 - 7786 526 ## EF1081 hypothetical protein + Prom 7794 - 7853 2.3 11 6 Op 1 . + CDS 7873 - 8055 269 ## EF1082 hypothetical protein 12 6 Op 2 . + CDS 8073 - 8378 377 ## EF1083 hypothetical protein 13 6 Op 3 . + CDS 8431 - 8862 477 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins 14 6 Op 4 . + CDS 8933 - 9175 249 ## EF1085 hypothetical protein + Prom 9306 - 9365 6.9 15 7 Tu 1 . + CDS 9545 - 9991 460 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 10000 - 10048 8.2 + Prom 10029 - 10088 7.0 16 8 Op 1 . + CDS 10130 - 10843 540 ## COG2761 Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis 17 8 Op 2 . + CDS 10914 - 11309 320 ## EF1089 hypothetical protein + Term 11345 - 11398 17.1 - Term 11331 - 11385 17.3 18 9 Tu 1 . - CDS 11495 - 12916 1198 ## EF1090 hypothetical protein - Prom 13055 - 13114 5.0 + Prom 13031 - 13090 8.9 19 10 Op 1 . + CDS 13244 - 16555 3264 ## COG4932 Predicted outer membrane protein 20 10 Op 2 . + CDS 16559 - 17989 1453 ## EF1092 cell wall surface anchor family protein 21 10 Op 3 . + CDS 17986 - 19869 2207 ## EF1093 cell wall surface anchor family protein + Term 19909 - 19945 2.5 22 11 Tu 1 . + CDS 19963 - 20817 803 ## COG3764 Sortase (surface protein transpeptidase) - Term 20688 - 20726 1.5 23 12 Tu 1 . - CDS 20884 - 21177 196 ## EF1095 hypothetical protein - Prom 21230 - 21289 8.5 + Prom 21288 - 21347 2.6 24 13 Tu 1 . + CDS 21372 - 21575 389 ## COG2155 Uncharacterized conserved protein + Term 21626 - 21665 5.2 25 14 Tu 1 . + CDS 21935 - 22447 556 ## EF1097 hypothetical protein + Term 22654 - 22686 0.7 - Term 23205 - 23253 10.1 26 15 Tu 1 . - CDS 23257 - 23562 366 ## EF1098 hypothetical protein - Prom 23583 - 23642 8.3 + Prom 23688 - 23747 4.9 27 16 Tu 1 . + CDS 23897 - 25498 1388 ## EF1099 collagen adhesin protein + Term 25502 - 25551 11.6 + Prom 25538 - 25597 4.6 28 17 Op 1 . + CDS 25623 - 27218 1300 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 29 17 Op 2 . + CDS 27288 - 28022 597 ## COG0500 SAM-dependent methyltransferases + Term 28083 - 28124 -0.8 - Term 27969 - 28011 -0.1 30 18 Tu 1 . - CDS 28019 - 28420 481 ## EF1102 hypothetical protein - Prom 28443 - 28502 7.7 - Term 28477 - 28515 3.0 31 19 Tu 1 . - CDS 28532 - 29884 1456 ## COG1113 Gamma-aminobutyrate permease and related permeases - Prom 29991 - 30050 12.0 - Term 29996 - 30054 14.3 32 20 Op 1 . - CDS 30055 - 30240 225 ## EF1104 hypothetical protein - Prom 30275 - 30334 9.5 - Term 30374 - 30417 12.1 33 20 Op 2 . - CDS 30421 - 30726 215 ## EF1105 hypothetical protein - Prom 30923 - 30982 10.1 + Prom 30859 - 30918 9.9 34 21 Op 1 17/0.000 + CDS 31078 - 31839 849 ## COG0247 Fe-S oxidoreductase 35 21 Op 2 13/0.000 + CDS 31852 - 33324 1387 ## COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain 36 21 Op 3 . + CDS 33317 - 34036 873 ## COG1556 Uncharacterized conserved protein + Term 34044 - 34098 10.7 + Prom 34109 - 34168 6.2 37 22 Tu 1 . + CDS 34257 - 34805 622 ## COG0681 Signal peptidase I + Term 34826 - 34881 13.5 + Prom 34831 - 34890 5.2 38 23 Op 1 8/0.000 + CDS 34916 - 38506 3538 ## COG3857 ATP-dependent nuclease, subunit B 39 23 Op 2 . + CDS 38499 - 42293 3669 ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 40 23 Op 3 1/0.324 + CDS 42363 - 42707 473 ## COG1733 Predicted transcriptional regulators + Term 42952 - 42999 12.2 + Prom 42947 - 43006 7.9 41 24 Op 1 40/0.000 + CDS 43026 - 44072 1395 ## COG0016 Phenylalanyl-tRNA synthetase alpha subunit 42 24 Op 2 . + CDS 44080 - 46503 3079 ## COG0072 Phenylalanyl-tRNA synthetase beta subunit + Term 46519 - 46564 14.1 - Term 46593 - 46646 8.4 43 25 Op 1 17/0.000 - CDS 46701 - 47366 705 ## COG0765 ABC-type amino acid transport system, permease component 44 25 Op 2 31/0.000 - CDS 47378 - 48091 626 ## COG0765 ABC-type amino acid transport system, permease component 45 25 Op 3 16/0.000 - CDS 48137 - 48964 1153 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 46 25 Op 4 . - CDS 48999 - 49730 632 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 49839 - 49898 8.9 + Prom 49913 - 49972 4.2 47 26 Op 1 2/0.108 + CDS 49995 - 50822 836 ## COG0796 Glutamate racemase 48 26 Op 2 . + CDS 50815 - 52170 478 ## PROTEIN SUPPORTED gi|165937309|ref|ZP_02225873.1| non-canonical purine NTP pyrophosphatase RdgB 49 26 Op 3 . + CDS 52183 - 52695 538 ## COG0622 Predicted phosphoesterase + Term 52741 - 52795 16.3 - Term 52603 - 52640 -0.7 50 27 Tu 1 . - CDS 52789 - 53553 558 ## COG1349 Transcriptional regulators of sugar metabolism - Prom 53597 - 53656 6.3 + Prom 53648 - 53707 5.4 51 28 Op 1 . + CDS 53747 - 54814 1147 ## COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold 52 28 Op 2 2/0.108 + CDS 54832 - 55290 489 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 53 28 Op 3 . + CDS 55303 - 56790 1438 ## COG3037 Uncharacterized protein conserved in bacteria 54 28 Op 4 . + CDS 56805 - 57104 448 ## EF1128 phosphotransferase enzyme II, B compnent SgaB 55 28 Op 5 9/0.000 + CDS 57118 - 57756 801 ## COG0269 3-hexulose-6-phosphate synthase and related proteins 56 28 Op 6 8/0.000 + CDS 57761 - 58621 674 ## COG3623 Putative L-xylulose-5-phosphate 3-epimerase 57 28 Op 7 . + CDS 58611 - 59321 579 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases + Term 59379 - 59430 13.1 + Prom 59370 - 59429 9.6 58 29 Op 1 . + CDS 59578 - 60066 654 ## COG0517 FOG: CBS domain + Prom 60068 - 60127 3.2 59 29 Op 2 6/0.027 + CDS 60147 - 60848 1005 ## COG2171 Tetrahydrodipicolinate N-succinyltransferase + Term 60863 - 60904 5.0 60 29 Op 3 . + CDS 60927 - 62054 1270 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase + Term 62060 - 62106 10.3 - Term 62048 - 62094 10.3 61 30 Tu 1 . - CDS 62099 - 63019 1011 ## COG0668 Small-conductance mechanosensitive channel - Prom 63148 - 63207 5.1 + Prom 63088 - 63147 15.8 62 31 Op 1 . + CDS 63189 - 63551 198 ## EF1137 hypothetical protein 63 31 Op 2 . + CDS 63628 - 64452 1114 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase + Term 64459 - 64518 8.4 - Term 64453 - 64502 11.2 64 32 Tu 1 . - CDS 64503 - 65225 727 ## COG2071 Predicted glutamine amidotransferases - Prom 65254 - 65313 5.2 - Term 65288 - 65319 3.1 65 33 Tu 1 . - CDS 65368 - 65748 460 ## PROTEIN SUPPORTED gi|148984704|ref|ZP_01817972.1| 50S ribosomal protein L20 - Prom 65779 - 65838 3.0 + Prom 65724 - 65783 5.7 66 34 Tu 1 . + CDS 65891 - 66337 378 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes + Term 66347 - 66395 11.0 - Term 66328 - 66387 16.3 67 35 Op 1 3/0.081 - CDS 66401 - 67213 1027 ## COG0561 Predicted hydrolases of the HAD superfamily 68 35 Op 2 1/0.324 - CDS 67232 - 68602 1466 ## COG1078 HD superfamily phosphohydrolases 69 35 Op 3 . - CDS 68599 - 69450 836 ## COG0095 Lipoate-protein ligase A - Prom 69508 - 69567 5.5 + Prom 69447 - 69506 7.5 70 36 Op 1 . + CDS 69746 - 70183 628 ## COG4506 Uncharacterized protein conserved in bacteria + Term 70185 - 70230 1.1 71 36 Op 2 5/0.027 + CDS 70260 - 70877 943 ## COG3343 DNA-directed RNA polymerase, delta subunit + Term 70889 - 70926 6.4 + Prom 70955 - 71014 7.6 72 37 Tu 1 . + CDS 71185 - 72795 2158 ## COG0504 CTP synthase (UTP-ammonia lyase) + Term 72803 - 72844 7.3 - Term 72836 - 72875 11.1 73 38 Op 1 7/0.027 - CDS 72879 - 75215 2427 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) 74 38 Op 2 . - CDS 75257 - 75874 385 ## COG3331 Penicillin-binding protein-related factor A, putative recombinase - Prom 75936 - 75995 3.7 + Prom 75786 - 75845 5.1 75 39 Op 1 6/0.027 + CDS 75937 - 76479 647 ## COG4474 Uncharacterized protein conserved in bacteria + Prom 76482 - 76541 2.2 76 39 Op 2 . + CDS 76573 - 76983 544 ## COG3599 Cell division initiation protein + Term 77141 - 77177 -0.3 77 40 Tu 1 . - CDS 77006 - 77185 123 ## - Prom 77211 - 77270 2.2 + Prom 77486 - 77545 7.1 78 41 Op 1 1/0.324 + CDS 77697 - 78860 1341 ## COG0116 Predicted N6-adenine-specific DNA methylase 79 41 Op 2 . + CDS 78879 - 80375 1685 ## COG2317 Zn-dependent carboxypeptidase 80 41 Op 3 6/0.027 + CDS 80408 - 81124 936 ## COG3935 Putative primosome component and related proteins 81 41 Op 4 . + CDS 81139 - 81786 696 ## COG0177 Predicted EndoIII-related endonuclease + Term 81806 - 81850 8.4 + Prom 81870 - 81929 7.3 82 42 Op 1 . + CDS 81960 - 82724 735 ## COG2188 Transcriptional regulators 83 42 Op 2 . + CDS 82721 - 84019 1386 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases + Prom 84086 - 84145 10.5 84 43 Op 1 . + CDS 84189 - 85142 1124 ## COG1446 Asparaginase 85 43 Op 2 10/0.000 + CDS 85162 - 85491 521 ## COG1440 Phosphotransferase system cellobiose-specific component IIB 86 43 Op 3 . + CDS 85510 - 86865 1467 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 87 43 Op 4 . + CDS 86883 - 87401 595 ## EF1161 hypothetical protein + Term 87418 - 87475 12.9 + Prom 87439 - 87498 3.3 88 44 Op 1 . + CDS 87519 - 89900 2020 ## COG1199 Rad3-related DNA helicases 89 44 Op 2 . + CDS 89897 - 90862 1108 ## COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D 90 44 Op 3 . + CDS 90884 - 91567 651 ## EF1164 HD domain-containing protein - Term 91536 - 91578 10.1 91 45 Tu 1 . - CDS 91584 - 92078 717 ## COG1666 Uncharacterized protein conserved in bacteria - Prom 92101 - 92160 3.7 + Prom 92226 - 92285 4.9 92 46 Tu 1 . + CDS 92311 - 93267 999 ## COG1284 Uncharacterized conserved protein + Prom 93294 - 93353 6.9 93 47 Tu 1 . + CDS 93470 - 94339 1401 ## COG0191 Fructose/tagatose bisphosphate aldolase + Term 94358 - 94392 5.2 + Prom 94365 - 94424 11.2 94 48 Op 1 1/0.324 + CDS 94513 - 95805 1664 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase 95 48 Op 2 9/0.000 + CDS 95820 - 97094 1192 ## COG1158 Transcription termination factor 96 48 Op 3 . + CDS 97164 - 97463 532 ## PROTEIN SUPPORTED gi|227518426|ref|ZP_03948475.1| ribosomal protein L31 + Term 97494 - 97538 11.2 97 49 Tu 1 . - CDS 97733 - 97951 77 ## - Prom 98079 - 98138 10.8 + Prom 97565 - 97624 11.1 98 50 Op 1 1/0.324 + CDS 97855 - 98892 649 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC 99 50 Op 2 . + CDS 98882 - 99628 492 ## COG1922 Teichoic acid biosynthesis proteins 100 50 Op 3 . + CDS 99629 - 100222 351 ## EF1174 hypothetical protein 101 50 Op 4 . + CDS 100275 - 100685 378 ## COG0615 Cytidylyltransferase + Term 100686 - 100739 5.7 + Prom 100732 - 100791 3.9 102 51 Op 1 . + CDS 100824 - 101888 631 ## EF1176 hypothetical protein 103 51 Op 2 . + CDS 101881 - 102093 203 ## EF1177 hypothetical protein + Term 102102 - 102147 7.6 + Prom 102191 - 102250 5.7 104 52 Op 1 . + CDS 102320 - 103198 1151 ## COG1940 Transcriptional regulator/sugar kinase + Prom 103203 - 103262 4.6 105 52 Op 2 . + CDS 103289 - 103537 528 ## EF1180 hypothetical protein + Term 103545 - 103605 24.5 - Term 103538 - 103588 19.2 106 53 Op 1 . - CDS 103595 - 104329 941 ## COG0778 Nitroreductase - Term 104347 - 104397 10.4 107 53 Op 2 . - CDS 104413 - 104871 683 ## COG1854 LuxS protein involved in autoinducer AI2 synthesis - Prom 104900 - 104959 8.5 + Prom 104838 - 104897 8.3 108 54 Op 1 3/0.081 + CDS 105078 - 106145 1198 ## COG0136 Aspartate-semialdehyde dehydrogenase 109 54 Op 2 9/0.000 + CDS 106179 - 107051 920 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase 110 54 Op 3 . + CDS 107082 - 108770 2036 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily + Term 108786 - 108836 13.0 + Prom 108809 - 108868 5.3 111 55 Op 1 2/0.108 + CDS 108895 - 110277 1265 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases 112 55 Op 2 1/0.324 + CDS 110312 - 110941 834 ## COG4470 Uncharacterized protein conserved in bacteria 113 55 Op 3 3/0.081 + CDS 110947 - 111717 1041 ## COG0647 Predicted sugar phosphatases of the HAD superfamily 114 55 Op 4 . + CDS 111720 - 112358 399 ## COG4478 Predicted membrane protein + Term 112360 - 112413 9.6 + Prom 112405 - 112464 7.3 115 56 Op 1 . + CDS 112485 - 113054 731 ## EF1190 hypothetical protein 116 56 Op 2 . + CDS 113047 - 113907 1097 ## COG1307 Uncharacterized protein conserved in bacteria + Term 113908 - 113970 19.0 + Prom 113910 - 113969 6.0 117 57 Tu 1 . + CDS 114061 - 114726 906 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) + Term 114732 - 114798 15.9 + Prom 114741 - 114800 6.6 118 58 Op 1 8/0.000 + CDS 114900 - 115604 1071 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 119 58 Op 2 4/0.054 + CDS 115611 - 117440 2013 ## COG5002 Signal transduction histidine kinase 120 58 Op 3 . + CDS 117440 - 118747 1088 ## COG4863 Uncharacterized protein conserved in bacteria 121 58 Op 4 . + CDS 118747 - 119601 708 ## EF1196 hypothetical protein 122 58 Op 5 . + CDS 119658 - 120464 896 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I + Term 120488 - 120543 12.2 + Prom 120591 - 120650 6.6 123 59 Op 1 7/0.027 + CDS 120675 - 121589 848 ## COG0701 Predicted permeases 124 59 Op 2 . + CDS 121608 - 122474 856 ## COG3689 Predicted membrane protein + Term 122480 - 122526 11.1 - Term 122468 - 122514 11.1 125 60 Op 1 12/0.000 - CDS 122526 - 123017 499 ## COG3610 Uncharacterized conserved protein 126 60 Op 2 . - CDS 123032 - 123784 658 ## COG2966 Uncharacterized conserved protein + Prom 124017 - 124076 11.1 127 61 Op 1 6/0.027 + CDS 124220 - 124489 487 ## COG4472 Uncharacterized protein conserved in bacteria 128 61 Op 2 7/0.027 + CDS 124486 - 124908 463 ## COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) 129 61 Op 3 . + CDS 124946 - 125251 532 ## COG3906 Uncharacterized protein conserved in bacteria + Term 125265 - 125310 8.0 - Term 125521 - 125560 7.5 130 62 Tu 1 . - CDS 125590 - 125652 229 ## - Prom 125676 - 125735 9.1 + Prom 125462 - 125521 10.6 131 63 Tu 1 . + CDS 125752 - 126600 952 ## MPTP_1291 Cro/CI family transcriptional regulator + Term 126627 - 126675 14.1 - Term 126613 - 126661 14.1 132 64 Op 1 3/0.081 - CDS 126674 - 127843 1437 ## COG0281 Malic enzyme 133 64 Op 2 . - CDS 127875 - 129200 1457 ## COG3493 Na+/citrate symporter - Prom 129226 - 129285 6.7 + Prom 129268 - 129327 8.8 134 65 Op 1 9/0.000 + CDS 129348 - 130898 1700 ## COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism 135 65 Op 2 . + CDS 130879 - 131571 470 ## PROTEIN SUPPORTED gi|149011191|ref|ZP_01832496.1| 30S ribosomal protein S9 + Term 131631 - 131690 8.4 + Prom 131573 - 131632 9.8 136 66 Tu 1 . + CDS 131756 - 133099 1877 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases + Term 133107 - 133165 17.6 - Term 133100 - 133148 7.2 137 67 Tu 1 . - CDS 133152 - 134063 1042 ## COG1316 Transcriptional regulator - Prom 134131 - 134190 6.4 + Prom 134247 - 134306 7.7 138 68 Op 1 3/0.081 + CDS 134341 - 135993 2038 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] 139 68 Op 2 . + CDS 136005 - 136709 838 ## COG3527 Alpha-acetolactate decarboxylase + Term 136736 - 136786 16.3 + Prom 136784 - 136843 11.9 140 69 Op 1 . + CDS 136867 - 137949 840 ## EF1215 hypothetical protein 141 69 Op 2 . + CDS 137967 - 138029 72 ## - Term 138003 - 138052 2.3 142 70 Tu 1 . - CDS 138063 - 138782 746 ## EF1216 hypothetical protein - Prom 138807 - 138866 13.1 + Prom 138765 - 138824 8.0 143 71 Tu 1 . + CDS 139031 - 139435 452 ## EF1217 putative lipoprotein + Term 139452 - 139507 11.1 + Prom 139437 - 139496 6.2 144 72 Op 1 36/0.000 + CDS 139643 - 140479 952 ## COG1176 ABC-type spermidine/putrescine transport system, permease component I 145 72 Op 2 8/0.000 + CDS 140472 - 141251 815 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 146 72 Op 3 13/0.000 + CDS 141290 - 142330 1228 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components 147 72 Op 4 . + CDS 142357 - 143421 1416 ## COG0687 Spermidine/putrescine-binding periplasmic protein 148 72 Op 5 . + CDS 143442 - 145181 1647 ## COG1001 Adenine deaminase 149 72 Op 6 . + CDS 145165 - 146493 1331 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases + Term 146565 - 146616 10.1 + Prom 146590 - 146649 9.2 150 73 Tu 1 . + CDS 146699 - 147568 959 ## EF1224 Cro/CI family transcriptional regulator + Term 147646 - 147686 5.1 + Prom 147679 - 147738 10.6 151 74 Op 1 2/0.108 + CDS 147789 - 148724 918 ## COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis 152 74 Op 2 1/0.324 + CDS 148751 - 149359 731 ## COG0431 Predicted flavoprotein 153 74 Op 3 . + CDS 149378 - 150634 1389 ## COG0431 Predicted flavoprotein + Term 150874 - 150909 5.2 + Prom 150861 - 150920 7.0 154 75 Op 1 . + CDS 151046 - 152536 748 ## EF1228 hypothetical protein 155 75 Op 2 . + CDS 152478 - 153161 384 ## EF1229 hypothetical protein 156 75 Op 3 . + CDS 153182 - 153277 184 ## + Term 153293 - 153342 14.2 + Prom 153288 - 153347 6.4 157 76 Tu 1 . + CDS 153485 - 154309 974 ## COG1408 Predicted phosphohydrolases + Term 154313 - 154345 3.2 + Prom 154505 - 154564 10.9 158 77 Op 1 1/0.324 + CDS 154601 - 154828 195 ## COG4209 ABC-type polysaccharide transport system, permease component 159 77 Op 2 7/0.027 + CDS 154840 - 155511 685 ## COG4209 ABC-type polysaccharide transport system, permease component 160 77 Op 3 14/0.000 + CDS 155526 - 156407 688 ## COG0395 ABC-type sugar transport system, permease component 161 77 Op 4 . + CDS 156425 - 158023 2002 ## COG1653 ABC-type sugar transport system, periplasmic component 162 77 Op 5 . + CDS 158080 - 158673 333 ## EF1235 hypothetical protein 163 77 Op 6 . + CDS 158666 - 159583 744 ## COG3458 Acetyl esterase (deacetylase) 164 77 Op 7 . + CDS 159564 - 160328 633 ## COG3568 Metal-dependent hydrolase 165 77 Op 8 1/0.324 + CDS 160333 - 162483 2532 ## COG1472 Beta-glucosidase-related glycosidases 166 77 Op 9 2/0.108 + CDS 162501 - 165776 3058 ## COG3459 Cellobiose phosphorylase 167 77 Op 10 . + CDS 165792 - 166757 1057 ## COG1609 Transcriptional regulators + Term 166768 - 166815 8.4 - Term 166534 - 166568 -0.8 168 78 Tu 1 . - CDS 166790 - 167320 611 ## EF1241 hypothetical protein - Prom 167415 - 167474 7.4 - Term 167473 - 167522 1.4 169 79 Tu 1 . - CDS 167591 - 168304 875 ## COG2188 Transcriptional regulators - Prom 168330 - 168389 8.8 + Prom 168397 - 168456 7.1 170 80 Op 1 1/0.324 + CDS 168547 - 169980 1724 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 171 80 Op 2 . + CDS 170005 - 171054 1285 ## COG0673 Predicted dehydrogenases and related proteins + Term 171081 - 171126 14.0 + Prom 171285 - 171344 7.0 172 81 Tu 1 . + CDS 171528 - 171986 540 ## COG2707 Predicted membrane protein + Term 171991 - 172032 8.2 - Term 171978 - 172020 9.2 173 82 Op 1 . - CDS 172025 - 172366 405 ## EF1247 hypothetical protein - Term 172386 - 172429 1.4 174 82 Op 2 . - CDS 172440 - 172703 402 ## EF1248 hypothetical protein - Prom 172753 - 172812 3.0 - Term 172800 - 172840 1.1 175 83 Tu 1 . - CDS 172859 - 174571 1812 ## COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP - Prom 174600 - 174659 8.0 + Prom 174692 - 174751 5.3 176 84 Op 1 . + CDS 174779 - 175450 634 ## EF1250 hypothetical protein 177 84 Op 2 . + CDS 175514 - 175621 169 ## + Term 175650 - 175685 2.7 + Prom 176396 - 176455 4.3 178 85 Op 1 9/0.000 + CDS 176498 - 177487 1193 ## COG2984 ABC-type uncharacterized transport system, periplasmic component 179 85 Op 2 13/0.000 + CDS 177512 - 178399 1131 ## COG4120 ABC-type uncharacterized transport system, permease component 180 85 Op 3 . + CDS 178396 - 179163 209 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 + Term 179169 - 179201 2.5 - Term 179157 - 179189 2.5 181 86 Op 1 12/0.000 - CDS 179195 - 179656 516 ## COG3610 Uncharacterized conserved protein 182 86 Op 2 . - CDS 179668 - 180444 692 ## COG2966 Uncharacterized conserved protein + Prom 180417 - 180476 10.9 183 87 Tu 1 . + CDS 180676 - 180882 223 ## EF1258 hypothetical protein - Term 180842 - 180892 6.2 184 88 Tu 1 . - CDS 180900 - 181679 986 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 181836 - 181895 7.1 + Prom 181798 - 181857 6.1 185 89 Op 1 40/0.000 + CDS 181894 - 182613 836 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 186 89 Op 2 . + CDS 182613 - 184082 1546 ## COG0642 Signal transduction histidine kinase + Term 184084 - 184132 10.2 - Term 184072 - 184119 11.6 187 90 Op 1 . - CDS 184121 - 184672 576 ## EF1262 hypothetical protein 188 90 Op 2 . - CDS 184687 - 185388 435 ## EF1263 hypothetical protein - Prom 185420 - 185479 5.4 - Term 185441 - 185488 10.7 189 91 Tu 1 . - CDS 185494 - 187602 1947 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily - Prom 187671 - 187730 7.2 + Prom 187635 - 187694 6.7 190 92 Tu 1 . + CDS 187860 - 189032 1263 ## COG1092 Predicted SAM-dependent methyltransferases + Term 189043 - 189103 19.1 - Term 189039 - 189080 5.1 191 93 Tu 1 . - CDS 189099 - 190016 1057 ## COG1039 Ribonuclease HIII - Prom 190212 - 190271 3.5 192 94 Tu 1 . + CDS 190259 - 192655 2182 ## COG0474 Cation transport ATPase + Term 192656 - 192714 14.9 + Prom 192658 - 192717 8.0 193 95 Tu 1 . + CDS 192797 - 194683 1648 ## COG4932 Predicted outer membrane protein + Term 194719 - 194751 -0.2 + Prom 194724 - 194783 4.8 194 96 Op 1 32/0.000 + CDS 194889 - 195362 617 ## COG0779 Uncharacterized protein conserved in bacteria + Prom 195377 - 195436 2.3 195 96 Op 2 22/0.000 + CDS 195506 - 196705 787 ## PROTEIN SUPPORTED gi|17988250|ref|NP_540884.1| transcription elongation factor NusA 196 96 Op 3 8/0.000 + CDS 196726 - 197025 525 ## COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination 197 96 Op 4 10/0.000 + CDS 197015 - 197320 495 ## PROTEIN SUPPORTED gi|29375842|ref|NP_814996.1| ribosomal protein L7A family protein 198 96 Op 5 32/0.000 + CDS 197333 - 199729 2652 ## COG0532 Translation initiation factor 2 (IF-2; GTPase) 199 96 Op 6 . + CDS 199754 - 200104 647 ## COG0858 Ribosome-binding factor A + Term 200106 - 200165 15.0 200 97 Tu 1 . + CDS 200187 - 200417 70 ## gi|307291257|ref|ZP_07571141.1| hypothetical protein HMPREF9509_01563 + Term 200438 - 200486 13.0 - Term 200093 - 200151 15.6 201 98 Op 1 . - CDS 200334 - 200441 77 ## 202 98 Op 2 . - CDS 200477 - 200950 546 ## EF1276 hypothetical protein 203 98 Op 3 . - CDS 200997 - 201479 594 ## COG1396 Predicted transcriptional regulators - Prom 201700 - 201759 11.6 + Prom 201460 - 201519 6.3 204 99 Op 1 . + CDS 201697 - 201831 175 ## 205 99 Op 2 . + CDS 201862 - 202632 781 ## EF1279 DNA replication protein, putative 206 99 Op 3 . + CDS 202651 - 203493 810 ## COG1484 DNA replication protein 207 99 Op 4 . + CDS 203496 - 203588 212 ## 208 99 Op 5 . + CDS 203581 - 203952 339 ## EF1282 hypothetical protein 209 99 Op 6 . + CDS 203972 - 204379 595 ## EF1283 RinA family transcriptional regulator + Prom 204536 - 204595 4.5 210 100 Op 1 . + CDS 204625 - 205017 407 ## EF1284 structural protein, putative 211 100 Op 2 . + CDS 205030 - 205542 971 ## EF1285 major tail protein 212 100 Op 3 . + CDS 205576 - 205935 439 ## EF1286 hypothetical protein + Term 205943 - 205983 7.5 213 101 Op 1 . + CDS 206022 - 206321 330 ## EF1287 hypothetical protein 214 101 Op 2 . + CDS 206311 - 209244 3602 ## COG5412 Phage-related protein 215 101 Op 3 . + CDS 209246 - 210172 1154 ## EF1289 tail protein, putative 216 101 Op 4 . + CDS 210185 - 211642 1196 ## EF1290 structural protein, putative 217 101 Op 5 . + CDS 211675 - 213444 1613 ## EF1291 hypothetical protein 218 101 Op 6 . + CDS 213468 - 213863 456 ## COG4824 Phage-related holin (Lysis protein) + Term 213948 - 213998 15.3 + Prom 213919 - 213978 2.8 219 102 Tu 1 . + CDS 214009 - 215106 1375 ## COG5263 FOG: Glucan-binding domain (YG repeat) + Term 215112 - 215158 11.1 + Prom 215171 - 215230 4.9 220 103 Op 1 12/0.000 + CDS 215260 - 216180 957 ## COG0130 Pseudouridine synthase 221 103 Op 2 . + CDS 216206 - 217156 611 ## PROTEIN SUPPORTED gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 222 103 Op 3 . + CDS 217156 - 217752 674 ## COG3153 Predicted acetyltransferase + Term 217763 - 217815 17.2 + Prom 217805 - 217864 5.8 223 104 Op 1 3/0.081 + CDS 217902 - 218225 318 ## COG1695 Predicted transcriptional regulators 224 104 Op 2 . + CDS 218229 - 218570 448 ## COG4817 Uncharacterized protein conserved in bacteria 225 104 Op 3 . + CDS 218596 - 218856 266 ## EF1299 hypothetical protein + Term 218867 - 218927 0.7 + Prom 218930 - 218989 7.0 226 105 Op 1 2/0.108 + CDS 219015 - 220190 973 ## COG0772 Bacterial cell division membrane protein 227 105 Op 2 . + CDS 220156 - 221304 903 ## COG0772 Bacterial cell division membrane protein + Term 221314 - 221378 11.8 - Term 221302 - 221365 13.3 228 106 Op 1 9/0.000 - CDS 221366 - 222253 860 ## COG0583 Transcriptional regulator 229 106 Op 2 . - CDS 222277 - 223152 878 ## COG0583 Transcriptional regulator - Prom 223177 - 223236 6.3 + Prom 223527 - 223586 2.8 230 107 Op 1 . + CDS 223631 - 223720 102 ## 231 107 Op 2 . + CDS 223689 - 226349 2539 ## COG0474 Cation transport ATPase + Term 226402 - 226445 3.3 + Prom 226443 - 226502 5.3 232 108 Tu 1 . + CDS 226557 - 227741 1194 ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases + Term 227755 - 227797 5.0 + Prom 227858 - 227917 7.8 233 109 Op 1 21/0.000 + CDS 227967 - 229010 1169 ## COG1420 Transcriptional regulator of heat shock gene 234 109 Op 2 29/0.000 + CDS 229065 - 229604 805 ## COG0576 Molecular chaperone GrpE (heat shock protein) 235 109 Op 3 . + CDS 229664 - 231493 2600 ## COG0443 Molecular chaperone + Term 231513 - 231564 7.4 + Prom 231529 - 231588 2.5 236 110 Op 1 . + CDS 231608 - 231730 116 ## EF1309 hypothetical protein 237 110 Op 2 . + CDS 231785 - 232954 1616 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain + Term 232964 - 233012 13.1 + Prom 232980 - 233039 7.7 238 111 Op 1 . + CDS 233059 - 233736 509 ## COG1396 Predicted transcriptional regulators 239 111 Op 2 . + CDS 233799 - 233960 162 ## gi|315169992|gb|EFU14009.1| conserved hypothetical protein + Prom 234050 - 234109 8.7 240 112 Op 1 . + CDS 234130 - 234273 156 ## + Term 234282 - 234321 -0.4 241 112 Op 2 . + CDS 234336 - 234866 407 ## COG0466 ATP-dependent Lon protease, bacterial type 242 112 Op 3 . + CDS 234850 - 235365 190 ## gi|307291297|ref|ZP_07571181.1| hypothetical protein HMPREF9509_01603 + Prom 235380 - 235439 5.4 243 113 Op 1 1/0.324 + CDS 235492 - 236733 540 ## COG0641 Arylsulfatase regulator (Fe-S oxidoreductase) 244 113 Op 2 2/0.108 + CDS 236717 - 236971 249 ## COG1131 ABC-type multidrug transport system, ATPase component 245 113 Op 3 45/0.000 + CDS 236947 - 237603 605 ## COG1131 ABC-type multidrug transport system, ATPase component 246 113 Op 4 . + CDS 237575 - 238330 714 ## COG0842 ABC-type multidrug transport system, permease component + Term 238346 - 238393 11.5 + Prom 238369 - 238428 11.0 247 114 Op 1 . + CDS 238463 - 239197 890 ## COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases + Prom 239207 - 239266 5.6 248 114 Op 2 6/0.027 + CDS 239295 - 241487 195 ## PROTEIN SUPPORTED gi|229231694|ref|ZP_04356122.1| SSU ribosomal protein S1P 249 114 Op 3 . + CDS 241490 - 241975 258 ## COG3091 Uncharacterized protein conserved in bacteria + Term 241981 - 242023 9.6 + TRNA 242044 - 242130 56.4 # Leu GAG 0 0 250 115 Tu 1 . + CDS 242374 - 243591 1018 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase + Term 243594 - 243651 17.0 - Term 243582 - 243639 19.5 251 116 Tu 1 . - CDS 243657 - 243833 284 ## EF1315 hypothetical protein - Prom 244025 - 244084 4.6 + Prom 243786 - 243845 6.5 252 117 Tu 1 . + CDS 244011 - 244838 909 ## EF1316 Cro/CI family transcriptional regulator + Prom 244853 - 244912 3.1 253 118 Tu 1 . + CDS 244939 - 246087 1480 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase + Term 246101 - 246136 5.0 - Term 246089 - 246124 5.0 254 119 Op 1 . - CDS 246129 - 246515 638 ## EF1318 hypothetical protein 255 119 Op 2 . - CDS 246529 - 247188 641 ## EF1319 hypothetical protein - Prom 247241 - 247300 6.0 + Prom 247160 - 247219 5.7 256 120 Op 1 36/0.000 + CDS 247349 - 248050 344 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 257 120 Op 2 . + CDS 248060 - 250696 2352 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Prom 250799 - 250858 7.0 258 121 Op 1 . + CDS 250889 - 251413 606 ## EF1322 hypothetical protein 259 121 Op 2 . + CDS 251430 - 252899 2165 ## COG2268 Uncharacterized protein conserved in bacteria + Term 252914 - 252953 6.0 260 122 Tu 1 . + CDS 253046 - 253279 377 ## EF1324 hypothetical protein + Term 253291 - 253347 7.1 + TRNA 253376 - 253456 72.8 # Tyr GTA 0 0 + TRNA 253466 - 253537 67.6 # Gln TTG 0 0 261 123 Tu 1 . + CDS 253692 - 253871 205 ## EF1325 hypothetical protein + Term 253885 - 253939 14.0 - Term 253877 - 253923 14.3 262 124 Tu 1 . - CDS 253927 - 254535 569 ## COG1309 Transcriptional regulator + Prom 254587 - 254646 8.3 263 125 Op 1 2/0.108 + CDS 254714 - 256363 1543 ## COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) 264 125 Op 2 . + CDS 256382 - 258961 2089 ## COG3581 Uncharacterized protein conserved in bacteria + Term 258987 - 259036 6.1 + Prom 259081 - 259140 7.3 265 126 Tu 1 . + CDS 259168 - 259875 931 ## COG2188 Transcriptional regulators + Term 259928 - 259984 15.3 + Prom 260591 - 260650 2.7 266 127 Tu 1 . + CDS 260695 - 261126 327 ## EF1337 hypothetical protein + Prom 261132 - 261191 6.3 267 128 Tu 1 . + CDS 261295 - 262209 630 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 + Term 262215 - 262258 10.3 - Term 262203 - 262246 6.5 268 129 Op 1 . - CDS 262252 - 262713 661 ## EF1339 hypothetical protein - Prom 262739 - 262798 8.3 269 129 Op 2 . - CDS 262910 - 263410 685 ## EF1340 pheromone cAM373 precursor lipoprotein - Prom 263442 - 263501 9.8 + Prom 263307 - 263366 7.2 270 130 Tu 1 . + CDS 263409 - 263492 93 ## - Term 263465 - 263527 15.2 271 131 Op 1 36/0.000 - CDS 263529 - 264569 1208 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 272 131 Op 2 . - CDS 264562 - 265869 1339 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component + Prom 265789 - 265848 8.6 273 132 Tu 1 . + CDS 266015 - 266503 450 ## EF1342 MarR family transcriptional regulator + Term 266508 - 266546 5.4 - Term 266495 - 266534 8.1 274 133 Op 1 20/0.000 - CDS 266541 - 267404 708 ## COG3833 ABC-type maltose transport systems, permease component 275 133 Op 2 19/0.000 - CDS 267408 - 268751 946 ## COG1175 ABC-type sugar transport systems, permease components - Prom 268776 - 268835 5.5 - Term 268779 - 268826 7.0 276 133 Op 3 . - CDS 268837 - 270087 1665 ## COG2182 Maltose-binding periplasmic proteins/domains - Prom 270232 - 270291 13.2 + Prom 270187 - 270246 6.7 277 134 Op 1 . + CDS 270272 - 270346 87 ## 278 134 Op 2 7/0.027 + CDS 270347 - 272113 1670 ## COG0366 Glycosidases 279 134 Op 3 7/0.027 + CDS 272141 - 273766 1525 ## COG0366 Glycosidases 280 134 Op 4 . + CDS 273768 - 275381 1604 ## COG0366 Glycosidases + Term 275399 - 275450 12.0 + Prom 275454 - 275513 10.2 281 135 Tu 1 . + CDS 275552 - 276133 688 ## COG3548 Predicted integral membrane protein 282 136 Tu 1 . + CDS 276609 - 279218 2742 ## COG0474 Cation transport ATPase + Prom 279668 - 279727 6.0 283 137 Op 1 28/0.000 + CDS 279817 - 280932 1676 ## COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit 284 137 Op 2 24/0.000 + CDS 280935 - 281912 1299 ## COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit 285 137 Op 3 30/0.000 + CDS 282055 - 283344 1683 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes 286 137 Op 4 . + CDS 283352 - 284758 787 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 + Term 284832 - 284890 16.1 - Term 284832 - 284865 2.3 287 138 Tu 1 . - CDS 284872 - 285858 903 ## COG4936 Predicted sensor domain - Prom 285982 - 286041 5.8 + Prom 285874 - 285933 8.1 288 139 Op 1 . + CDS 286019 - 287158 1479 ## COG0371 Glycerol dehydrogenase and related enzymes 289 139 Op 2 9/0.000 + CDS 287171 - 287569 560 ## COG3412 Uncharacterized protein conserved in bacteria 290 139 Op 3 10/0.000 + CDS 287570 - 288553 1329 ## COG2376 Dihydroxyacetone kinase 291 139 Op 4 . + CDS 288566 - 289168 875 ## COG2376 Dihydroxyacetone kinase + Term 289182 - 289231 9.1 + Prom 289208 - 289267 10.6 292 140 Tu 1 . + CDS 289307 - 290074 880 ## EF1362 hypothetical protein + Term 290078 - 290128 15.0 - Term 290066 - 290115 15.6 293 141 Tu 1 . - CDS 290147 - 291298 1467 ## COG3425 3-hydroxy-3-methylglutaryl CoA synthase - Prom 291380 - 291439 6.6 + Prom 291265 - 291324 6.8 294 142 Tu 1 . + CDS 291484 - 293895 2720 ## COG1257 Hydroxymethylglutaryl-CoA reductase + Term 293901 - 293943 10.1 295 143 Op 1 . - CDS 293915 - 294967 927 ## COG0628 Predicted permease 296 143 Op 2 . - CDS 294984 - 296189 985 ## COG1434 Uncharacterized conserved protein - Prom 296256 - 296315 8.3 - Term 296291 - 296322 2.1 297 144 Tu 1 . - CDS 296345 - 296545 278 ## COG1278 Cold shock proteins - Prom 296578 - 296637 5.1 - Term 296785 - 296829 9.1 298 145 Tu 1 . - CDS 296843 - 297964 1116 ## EF1368 hypothetical protein - Prom 298093 - 298152 6.9 299 146 Tu 1 . - CDS 298301 - 298651 423 ## COG1396 Predicted transcriptional regulators - Prom 298676 - 298735 6.0 + Prom 298751 - 298810 4.0 300 147 Tu 1 . + CDS 298843 - 300276 1145 ## COG0477 Permeases of the major facilitator superfamily + Term 300284 - 300336 15.1 + Prom 300330 - 300389 4.0 301 148 Op 1 1/0.324 + CDS 300481 - 301155 839 ## COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold 302 148 Op 2 3/0.081 + CDS 301165 - 302484 1364 ## COG4109 Predicted transcriptional regulator containing CBS domains 303 148 Op 3 . + CDS 302498 - 303451 931 ## PROTEIN SUPPORTED gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B + Prom 303478 - 303537 7.6 304 149 Tu 1 . + CDS 303565 - 303903 395 ## COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism + Term 303926 - 303978 13.3 - Term 303914 - 303963 11.9 305 150 Tu 1 . - CDS 303964 - 304275 350 ## EF1375 hypothetical protein - Prom 304416 - 304475 8.0 + Prom 304297 - 304356 7.9 306 151 Op 1 . + CDS 304418 - 305599 805 ## COG4767 Glycopeptide antibiotics resistance protein 307 151 Op 2 . + CDS 305662 - 307011 1544 ## COG0513 Superfamily II DNA and RNA helicases + Term 307033 - 307083 16.1 + Prom 307365 - 307424 6.1 308 152 Tu 1 . + CDS 307560 - 308240 500 ## EF1378 transcriptional regulator, putative + Term 308254 - 308292 -0.3 309 153 Tu 1 . + CDS 308589 - 311231 3499 ## COG0013 Alanyl-tRNA synthetase + Term 311292 - 311339 9.4 + Prom 311289 - 311348 5.2 310 154 Op 1 9/0.000 + CDS 311434 - 312150 866 ## COG2384 Predicted SAM-dependent methyltransferase 311 154 Op 2 . + CDS 312134 - 313252 1350 ## COG0327 Uncharacterized conserved protein 312 154 Op 3 . + CDS 313282 - 314511 1823 ## COG2195 Di- and tripeptidases + Term 314522 - 314582 1.8 313 155 Tu 1 . - CDS 314483 - 314578 58 ## - Prom 314717 - 314776 4.2 + Prom 314573 - 314632 7.0 314 156 Op 1 . + CDS 314657 - 314923 251 ## COG3326 Predicted membrane protein 315 156 Op 2 . + CDS 314943 - 315971 831 ## COG0392 Predicted integral membrane protein + Term 315976 - 316020 13.4 + Prom 316001 - 316060 10.1 316 157 Op 1 . + CDS 316112 - 316687 452 ## COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A 317 157 Op 2 . + CDS 316703 - 316918 272 ## COG2116 Formate/nitrite family of transporters 318 157 Op 3 . + CDS 316973 - 317527 337 ## COG2116 Formate/nitrite family of transporters 319 157 Op 4 . + CDS 317517 - 318098 552 ## EF1387 hypothetical protein 320 157 Op 5 23/0.000 + CDS 318086 - 318574 639 ## COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit 321 157 Op 6 2/0.108 + CDS 318586 - 319884 1117 ## COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit 322 157 Op 7 . + CDS 319887 - 322607 2586 ## COG3383 Uncharacterized anaerobic dehydrogenase 323 157 Op 8 5/0.027 + CDS 322625 - 323827 933 ## COG0303 Molybdopterin biosynthesis enzyme + Term 323858 - 323900 11.9 + Prom 323984 - 324043 4.5 324 158 Op 1 6/0.027 + CDS 324117 - 324599 389 ## COG0315 Molybdenum cofactor biosynthesis enzyme 325 158 Op 2 . + CDS 324605 - 324838 234 ## COG2896 Molybdenum cofactor biosynthesis enzyme 326 158 Op 3 . + CDS 324896 - 325570 593 ## COG2896 Molybdenum cofactor biosynthesis enzyme 327 158 Op 4 . + CDS 325573 - 326007 357 ## COG2258 Uncharacterized protein conserved in bacteria 328 158 Op 5 3/0.081 + CDS 326000 - 326482 240 ## PROTEIN SUPPORTED gi|134277849|ref|ZP_01764564.1| ribosomal protein S16 329 158 Op 6 1/0.324 + CDS 326486 - 327457 1004 ## COG0303 Molybdopterin biosynthesis enzyme 330 158 Op 7 23/0.000 + CDS 327476 - 328276 869 ## COG0725 ABC-type molybdate transport system, periplasmic component 331 158 Op 8 6/0.027 + CDS 328285 - 328956 586 ## COG4149 ABC-type molybdate transport system, permease component 332 158 Op 9 . + CDS 328953 - 329957 892 ## COG1118 ABC-type sulfate/molybdate transport systems, ATPase component + Term 330025 - 330062 1.7 + Prom 329960 - 330019 6.1 333 159 Tu 1 . + CDS 330079 - 332181 2582 ## COG2217 Cation transport ATPase + Term 332195 - 332232 3.1 + Prom 332359 - 332418 5.5 334 160 Op 1 . + CDS 332450 - 332893 572 ## EF1402 hypothetical protein 335 160 Op 2 3/0.081 + CDS 332913 - 333461 456 ## COG1286 Uncharacterized membrane protein, required for colicin V production 336 161 Op 1 3/0.081 + CDS 333572 - 335938 3051 ## COG1193 Mismatch repair ATPase (MutS family) + Prom 335945 - 336004 7.1 337 161 Op 2 4/0.054 + CDS 336036 - 336350 534 ## COG0526 Thiol-disulfide isomerase and thioredoxins + Term 336382 - 336434 10.3 + Prom 336429 - 336488 8.2 338 162 Tu 1 . + CDS 336515 - 338311 1736 ## COG0322 Nuclease subunit of the excinuclease complex + Term 338320 - 338372 9.6 + Prom 338314 - 338373 4.9 339 163 Tu 1 . + CDS 338463 - 338720 244 ## EF1407 hypothetical protein + Prom 338726 - 338785 6.0 340 164 Op 1 9/0.000 + CDS 338825 - 339724 276 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 341 164 Op 2 . + CDS 339717 - 340979 1153 ## COG1668 ABC-type Na+ efflux pump, permease component + Term 341000 - 341050 18.5 342 165 Tu 1 . - CDS 341015 - 342013 1023 ## COG1609 Transcriptional regulators - Prom 342122 - 342181 8.2 + Prom 342058 - 342117 7.4 343 166 Tu 1 . + CDS 342155 - 343549 1693 ## COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases + Term 343554 - 343600 11.2 344 167 Tu 1 . - CDS 343575 - 344009 538 ## EF1412 hypothetical protein - Prom 344073 - 344132 4.0 + Prom 344211 - 344270 2.0 345 168 Tu 1 . + CDS 344297 - 345793 1153 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains + Term 345800 - 345850 11.0 - Term 345792 - 345832 9.2 346 169 Tu 1 . - CDS 345834 - 347120 1165 ## COG2081 Predicted flavoproteins - Prom 347177 - 347236 4.5 + Prom 347176 - 347235 5.4 347 170 Tu 1 . + CDS 347258 - 348604 1730 ## COG0334 Glutamate dehydrogenase/leucine dehydrogenase + Term 348605 - 348656 9.2 + Prom 348623 - 348682 7.5 348 171 Tu 1 . + CDS 348786 - 350135 1882 ## COG0166 Glucose-6-phosphate isomerase + Term 350172 - 350219 -0.3 - Term 350011 - 350044 0.2 349 172 Tu 1 . - CDS 350247 - 351473 768 ## COG0582 Integrase - Prom 351623 - 351682 7.4 350 173 Tu 1 . - CDS 351987 - 353555 1037 ## Gura_0550 hypothetical protein - Term 353591 - 353622 1.1 351 174 Op 1 . - CDS 353628 - 354224 556 ## LMHCC_1411 GP35 352 174 Op 2 . - CDS 354252 - 354716 422 ## EF1421 hypothetical protein 353 174 Op 3 . - CDS 354737 - 355060 408 ## COG1396 Predicted transcriptional regulators - Prom 355250 - 355309 6.6 + Prom 355136 - 355195 5.9 354 175 Op 1 . + CDS 355226 - 355411 103 ## COG1396 Predicted transcriptional regulators 355 175 Op 2 . + CDS 355457 - 355603 206 ## EF1424 hypothetical protein 356 175 Op 3 . + CDS 355666 - 356226 381 ## EF1425 hypothetical protein 357 175 Op 4 . + CDS 356207 - 356437 255 ## EF1426 VrlI protein, putative 358 175 Op 5 . + CDS 356448 - 356615 222 ## gi|307291414|ref|ZP_07571298.1| hypothetical protein HMPREF9509_01723 359 175 Op 6 . + CDS 356616 - 356846 304 ## EF1428 hypothetical protein 360 175 Op 7 . + CDS 356902 - 357192 355 ## EF1429 hypothetical protein 361 175 Op 8 . + CDS 357197 - 359311 1575 ## EF1430 hypothetical protein 362 175 Op 9 . + CDS 359312 - 360484 899 ## EF1432 hypothetical protein 363 175 Op 10 . + CDS 360484 - 361185 461 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I 364 175 Op 11 . + CDS 361203 - 361961 401 ## COG3935 Putative primosome component and related proteins 365 175 Op 12 . + CDS 361977 - 362474 247 ## COG3331 Penicillin-binding protein-related factor A, putative recombinase 366 175 Op 13 . + CDS 362495 - 362809 124 ## EF1436 hypothetical protein + Prom 362811 - 362870 2.6 367 176 Op 1 . + CDS 362893 - 363642 553 ## EF1437 hypothetical protein 368 176 Op 2 . + CDS 363667 - 363861 156 ## gi|315029941|gb|EFT41873.1| hypothetical protein HMPREF9496_01041 369 176 Op 3 . + CDS 363892 - 364119 252 ## gi|227553236|ref|ZP_03983285.1| hypothetical protein HMPREF0346_0401 370 176 Op 4 . + CDS 364216 - 364974 535 ## COG0338 Site-specific DNA methylase 371 176 Op 5 . + CDS 364996 - 365223 132 ## EF1439 hypothetical protein 372 176 Op 6 . + CDS 365229 - 365627 326 ## EF1440 hypothetical protein 373 176 Op 7 . + CDS 365628 - 365963 247 ## EF1441 hypothetical protein 374 176 Op 8 . + CDS 365960 - 366283 442 ## gi|307291430|ref|ZP_07571314.1| hypothetical protein HMPREF9509_01739 375 176 Op 9 . + CDS 366280 - 366447 207 ## gi|307291431|ref|ZP_07571315.1| hypothetical protein HMPREF9509_01740 376 176 Op 10 . + CDS 366440 - 367054 660 ## EF1443 hypothetical protein 377 176 Op 11 . + CDS 367067 - 367552 287 ## EF1444 hypothetical protein 378 176 Op 12 . + CDS 367553 - 367870 492 ## EF1445 replicase domain-containing protein 379 176 Op 13 . + CDS 367864 - 368070 301 ## EF1446 hypothetical protein 380 176 Op 14 . + CDS 368071 - 368250 145 ## EF1447 hypothetical protein 381 176 Op 15 . + CDS 368283 - 368375 153 ## 382 176 Op 16 . + CDS 368391 - 368570 136 ## EF1449 hypothetical protein + Term 368593 - 368651 16.2 + Prom 368586 - 368645 2.6 383 177 Tu 1 . + CDS 368671 - 369255 501 ## EF1450 positive control factor, putative + Term 369361 - 369397 3.0 + TRNA 369415 - 369499 59.5 # Lys TTT 0 0 + Prom 369424 - 369483 80.4 384 178 Op 1 . + CDS 369690 - 369893 107 ## gi|293382336|ref|ZP_06628275.1| conserved hypothetical protein 385 178 Op 2 . + CDS 369995 - 370264 371 ## EF1451 hypothetical protein 386 178 Op 3 . + CDS 370309 - 371577 1092 ## COG0863 DNA modification methylase + Prom 371641 - 371700 2.2 387 179 Op 1 . + CDS 371721 - 371933 273 ## EF1453 hypothetical protein 388 179 Op 2 . + CDS 371948 - 372673 344 ## EF1454 terminase, small subunit, internal deletion 389 179 Op 3 1/0.324 + CDS 372654 - 374090 1226 ## COG5410 Uncharacterized protein conserved in bacteria 390 179 Op 4 2/0.108 + CDS 374113 - 375507 790 ## COG3567 Uncharacterized protein conserved in bacteria 391 179 Op 5 . + CDS 375497 - 376741 901 ## COG2369 Uncharacterized protein, homolog of phage Mu protein gp30 392 179 Op 6 . + CDS 376734 - 376898 234 ## + Term 376901 - 376931 1.1 393 180 Op 1 . + CDS 376955 - 377242 332 ## EF1459 hypothetical protein 394 180 Op 2 . + CDS 377235 - 377444 396 ## EF1460 LysM domain-containing protein 395 180 Op 3 . + CDS 377457 - 378557 1082 ## COG3566 Uncharacterized protein conserved in bacteria 396 180 Op 4 . + CDS 378560 - 379030 842 ## EF1462 hypothetical protein 397 180 Op 5 . + CDS 379051 - 379932 974 ## COG4834 Uncharacterized protein conserved in bacteria 398 180 Op 6 . + CDS 379952 - 380338 590 ## EF1464 hypothetical protein 399 180 Op 7 . + CDS 380350 - 380691 292 ## EF1465 hypothetical protein + Term 380716 - 380764 7.5 + Prom 380707 - 380766 5.5 400 181 Op 1 . + CDS 380796 - 381293 290 ## EF1466 hypothetical protein 401 181 Op 2 . + CDS 381293 - 381652 266 ## EF1467 hypothetical protein 402 181 Op 3 . + CDS 381639 - 382115 349 ## EF1468 hypothetical protein 403 181 Op 4 . + CDS 382112 - 383149 1164 ## EF1469 hypothetical protein 404 181 Op 5 . + CDS 383165 - 383563 495 ## EF1470 hypothetical protein + Term 383564 - 383599 4.0 405 182 Op 1 . + CDS 383616 - 383948 471 ## EF1471 hypothetical protein 406 182 Op 2 . + CDS 383989 - 384129 133 ## EF1472 hypothetical protein 407 182 Op 3 . + CDS 384132 - 389297 4885 ## COG0739 Membrane proteins related to metalloendopeptidases 408 182 Op 4 . + CDS 389297 - 389854 625 ## EF1474 LysM domain-containing protein 409 182 Op 5 . + CDS 389864 - 390226 279 ## EF1475 hypothetical protein 410 182 Op 6 . + CDS 390227 - 391057 605 ## EF1476 hypothetical protein 411 182 Op 7 . + CDS 391057 - 391389 213 ## EF1477 hypothetical protein 412 182 Op 8 . + CDS 391389 - 391736 320 ## EF1478 hypothetical protein 413 182 Op 9 . + CDS 391729 - 392883 1131 ## COG3299 Uncharacterized homolog of phage Mu protein gp47 414 182 Op 10 . + CDS 392867 - 393496 443 ## EF1480 hypothetical protein 415 182 Op 11 . + CDS 393515 - 395158 1157 ## EF1481 hypothetical protein 416 182 Op 12 . + CDS 395180 - 395614 433 ## EF1482 hypothetical protein 417 182 Op 13 . + CDS 395614 - 395742 275 ## EF1483 hypothetical protein 418 182 Op 14 . + CDS 395747 - 396103 369 ## EF1484 hypothetical protein 419 182 Op 15 . + CDS 396172 - 396297 194 ## EF1485 hypothetical protein + Term 396298 - 396331 2.4 420 182 Op 16 . + CDS 396356 - 397462 1296 ## COG5263 FOG: Glucan-binding domain (YG repeat) + Term 397526 - 397561 5.8 + TRNA 397556 - 397629 86.4 # Met CAT 0 0 + Prom 397558 - 397617 76.5 421 183 Op 1 . + CDS 397788 - 398765 155 ## RBAM_011990 hypothetical protein 422 183 Op 2 . + CDS 398819 - 399610 461 ## gi|227553289|ref|ZP_03983338.1| conserved hypothetical protein 423 183 Op 3 . + CDS 399611 - 399748 98 ## gi|307291477|ref|ZP_07571361.1| hypothetical protein HMPREF9509_01788 + Term 399750 - 399796 6.6 - Term 399742 - 399779 6.1 424 184 Tu 1 . - CDS 399787 - 400035 222 ## EF2084 hypothetical protein - Prom 400259 - 400318 16.3 - Term 400280 - 400315 5.6 425 185 Op 1 . - CDS 400332 - 400511 225 ## EF1490 hypothetical protein 426 185 Op 2 . - CDS 400570 - 401013 570 ## COG1780 Protein involved in ribonucleotide reduction - Prom 401118 - 401177 10.9 + Prom 401078 - 401137 8.9 427 186 Op 1 . + CDS 401386 - 401709 549 ## EF1492 V-type ATPase, subunit F 428 186 Op 2 16/0.000 + CDS 401699 - 403678 2084 ## COG1269 Archaeal/vacuolar-type H+-ATPase subunit I 429 186 Op 3 . + CDS 403706 - 404179 804 ## COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K 430 186 Op 4 . + CDS 404196 - 404777 850 ## EF1495 V-type ATPase, subunit E 431 186 Op 5 13/0.000 + CDS 404794 - 405795 994 ## COG1527 Archaeal/vacuolar-type H+-ATPase subunit C 432 186 Op 6 12/0.000 + CDS 405785 - 406096 443 ## COG1436 Archaeal/vacuolar-type H+-ATPase subunit F 433 186 Op 7 16/0.000 + CDS 406114 - 407895 2329 ## COG1155 Archaeal/vacuolar-type H+-ATPase subunit A 434 186 Op 8 16/0.000 + CDS 407888 - 409264 1896 ## COG1156 Archaeal/vacuolar-type H+-ATPase subunit B 435 186 Op 9 . + CDS 409269 - 409904 798 ## COG1394 Archaeal/vacuolar-type H+-ATPase subunit D + Term 409918 - 409965 3.2 436 186 Op 10 . + CDS 409979 - 410389 592 ## EF1501 hypothetical protein + Term 410395 - 410446 17.1 - Term 410377 - 410439 19.9 437 187 Op 1 . - CDS 410440 - 411387 1069 ## COG2367 Beta-lactamase class A 438 187 Op 2 . - CDS 411482 - 413362 1502 ## COG3855 Uncharacterized protein conserved in bacteria - Prom 413416 - 413475 6.8 + Prom 413184 - 413243 8.0 439 188 Op 1 . + CDS 413445 - 413543 71 ## 440 188 Op 2 . + CDS 413578 - 414870 1316 ## COG0019 Diaminopimelate decarboxylase + Term 414882 - 414919 1.1 + Prom 414872 - 414931 7.2 441 189 Tu 1 . + CDS 415016 - 416008 938 ## COG1073 Hydrolases of the alpha/beta superfamily + Term 416013 - 416050 1.5 442 190 Op 1 . - CDS 416024 - 416557 306 ## EF1506 hypothetical protein 443 190 Op 2 . - CDS 416596 - 416706 78 ## - Prom 416932 - 416991 5.1 + Prom 416744 - 416803 3.8 444 191 Tu 1 . + CDS 416843 - 417697 520 ## EF1508 hypothetical protein + Prom 417732 - 417791 5.6 445 192 Tu 1 . + CDS 417910 - 418449 490 ## EF1509 hypothetical protein + Term 418486 - 418533 9.1 - Term 418464 - 418530 15.1 446 193 Tu 1 . - CDS 418547 - 418891 598 ## COG2151 Predicted metal-sulfur cluster biosynthetic enzyme - Prom 419020 - 419079 9.3 + Prom 418782 - 418841 3.6 447 194 Tu 1 . + CDS 418955 - 419038 70 ## + Term 419071 - 419114 -0.8 + Prom 419049 - 419108 4.4 448 195 Op 1 1/0.324 + CDS 419168 - 420232 1055 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 449 195 Op 2 . + CDS 420249 - 421625 1050 ## COG1305 Transglutaminase-like enzymes, putative cysteine proteases 450 195 Op 3 . + CDS 421661 - 423295 1665 ## COG4166 ABC-type oligopeptide transport system, periplasmic component Predicted protein(s) >gi|307679287|gb|GL456440.1| GENE 1 3 - 92 104 29 aa, chain + ## HITS:1 COG:no KEGG:EF1070 NR:ns ## KEGG: EF1070 # Name: galE-1 # Def: UDP-glucose 4-epimerase # Organism: E.faecalis # Pathway: Galactose metabolism [PATH:efa00052]; Amino sugar and nucleotide sugar metabolism [PATH:efa00520]; Metabolic pathways [PATH:efa01100] # 1 29 301 329 329 67 96.0 2e-10 GWQPEVTEVKDIIATAWQWHVKYPQGYNE >gi|307679287|gb|GL456440.1| GENE 2 104 - 1597 1646 497 aa, chain + ## HITS:1 COG:SP1829 KEGG:ns NR:ns ## COG: SP1829 COG4468 # Protein_GI_number: 15901658 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose-1-phosphate uridyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 9 494 5 488 491 535 54.0 1e-151 MMKESSKWIAAFVEIIIENGDWTETDRYYLTNRITKLVGCDFFEQPEAVACEQEPLRVVE HLLNIAQANHQIDDSITEAEQLEAELMDFITPTPTIINQKFMDYYQESPRKATDYFYQLC KTNNYIKTKAIAKNIIFPMDSPYGKLEITINLSKPEKDARKILAEKKMSQKKYPACMLCM ENEGYYGRVNYPARTNHRIIRLNLEDEAWGFQYSPYAYYNEHAIFLDQQHREMKIEKKTF QRLLKITELFPEYFVGSNADLPIVGGSILSHDHYQAGRHTFPMDLAPMETRFSLKKYPEI TAGILKWPMSVIRLQSDHQEELVEAAELILTKWRNYSDERVSVRAYSEDGTPHHTITPIA RRKGSLFELDLVLRDNNVSEEFPDGIFHPHPEVQHIKQENIGLIEVMGLAILPPRLAQEL REVEKYLLKQPNQIAESHRAWADELSQQTITEANVKEVIQQGIGTIFVQILTDAGVFKRD EEGRRAFERFIQCIEND >gi|307679287|gb|GL456440.1| GENE 3 1604 - 2608 872 334 aa, chain + ## HITS:1 COG:SP1854 KEGG:ns NR:ns ## COG: SP1854 COG1609 # Protein_GI_number: 15901682 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 4 329 1 331 335 246 40.0 5e-65 MRNIVTIKDIAEQVGVSSATVSRVLNYDETLSVSDETKKKIFETAETLNYKKRARKKQAG KKKIRFVQWFSDPEELDDIYYLSIRLGVEKRAEELGFLLVKESLTNLSQKRFDGTIALGK FDEKQVAALAALGAPLLFVDFDAMAFGQNSIVVDFAGSVKTIVQEFLAQGHQKIGMLSGQ EYTKESHVALVDPRFVAFKETLKDLDLYHQEWVVEAAFSVEEGYQAMKDFIEKADTRPTA FFAASDTLAIGAMRALQEVAIRVPEDISIIGFNDISVAKYVSPTLTTVKVHTEWMGELAV ETMKELCLNTPPVPRKIIVGTEFIQRDSTKHSSK >gi|307679287|gb|GL456440.1| GENE 4 2689 - 3183 408 164 aa, chain + ## HITS:1 COG:no KEGG:EF1073 NR:ns ## KEGG: EF1073 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 164 1 164 164 293 95.0 1e-78 MQPKLIILRGNSGSGKTTIAKALHRCLKEQSLLISQDVVRREMLRVKDKTGNLSIALLKQ LVAFGYQECQYVIVEGIFQKAIYHSFFQEMNHLFEGNVQVYYFDISFEETLKRHSQRNKN QEFGVVEMKRWWLPEDYLGLAGEQRLSEQLSEKQIIRQILADIQ >gi|307679287|gb|GL456440.1| GENE 5 3247 - 3510 344 87 aa, chain + ## HITS:1 COG:no KEGG:EF1074 NR:ns ## KEGG: EF1074 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 87 1 87 90 172 97.0 6e-42 MDYQERLKNLPPEVMTAFSESFIFLISNDKVQHFPARDLTQAEMIQRVKEKLGEAVTWSL WQGFVIAVNSEKTCVAVLPKYHQLDGF >gi|307679287|gb|GL456440.1| GENE 6 3583 - 4089 553 168 aa, chain + ## HITS:1 COG:no KEGG:EF1075 NR:ns ## KEGG: EF1075 # Name: not_defined # Def: acetyltransferase # Organism: E.faecalis # Pathway: not_defined # 1 168 1 168 168 328 100.0 4e-89 MSELVVIREMQEKDILALDTQFVQQGWPSRQEILMNYLEEQLVKQRTVFVAEKKATLLGY VTLLPLAKEGPFKNLYPEIADFNVFLPFQKQGVGRLLLNRAENVAKSYADTVSLGVGLHP GYGAAQRLYIKQGYVPDGSGVWFQNKQLKPNERCVNDDELVLYLSKKL >gi|307679287|gb|GL456440.1| GENE 7 4138 - 4578 473 146 aa, chain + ## HITS:1 COG:SP1023 KEGG:ns NR:ns ## COG: SP1023 COG0454 # Protein_GI_number: 15900894 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Streptococcus pneumoniae TIGR4 # 1 142 1 141 143 131 47.0 3e-31 MIRKMKPTDAAALTIINKEQLGYEVSVDVTCKQIEKLLLASDREFLYVYEETKTGKILGY VHAQLYETIYSQTLLNVLGLAVAKEAEGRGIGKQLMTKLETEAKKCNLSAIRLNSGEQRT AAHQFYEHIGYVSDKKQKRFIKYLDT >gi|307679287|gb|GL456440.1| GENE 8 4771 - 5925 1291 384 aa, chain + ## HITS:1 COG:L125116 KEGG:ns NR:ns ## COG: L125116 COG0477 # Protein_GI_number: 15672105 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 1 381 1 381 387 504 81.0 1e-143 MTKKNSMMYLAISNLFLVFLGVGLVIPVIPQLKEEMHFSGTTMGMMISIFAIAQLITSPI AGVLSDKIGRKKMIATGMLVFSISELLFGLAQAKSGFYISRGLGGIAAALLMPSVTAFVA DMTTISERPKAMGLVSAAISGGFIIGPGVGGFIAYLGIRAPFFAAAFLAFIGFILTLTVL KEPEKRILAAVEAKKGSFMDILRNPMFTSLFVIILISSFGLQAFESIYSIMATINFGFTT SEIAIVITVSGILALICQLFFFDAIVQKIGEMGLIQLTFFASAIFIAVIAFTKNNLVVVF STFIVFLAFDLFRPAVTTYLSKHAGDQQGTINGLNSTFTSFGNILGPMAAGALFDINHFF PYYVSAVILLGTGFLSLFLNRNKM >gi|307679287|gb|GL456440.1| GENE 9 6076 - 7392 1383 438 aa, chain + ## HITS:1 COG:pli0067 KEGG:ns NR:ns ## COG: pli0067 COG0389 # Protein_GI_number: 18450349 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Listeria innocua # 4 431 6 426 426 388 47.0 1e-107 MKFDYEKEPSRDILCIDCKSFYASVECAERGLDPLKTMLVVMSNAENAGGLVLSASPMAK KVLGVSNVTRKNQVPAHPDLYVVPPRMNLYMKKNQEINNLYKKFVADEDHSVFSVDESFL DVTASLSYFHCETAYKMARIIQRVVYNHVGIYVTVGIGDNPLLAKLALDNGAKHSPDFIA EWRYDCVPDTVWQLPSLTDFCGIGRRMAKRLNRLGIDSVYELAQANPHLLQETFGVMGLQ LYAHSWGIDRTFLGKKAQHKAEKSFGNSQILPRDYARRDQIELVLKELTEQVAARLRKAH CQTECITVYVGYSKGQIDREGRTGWRKQQTIPATNNTKVLITYVLALFREHYLAGTDVRQ LGLSYGKLVWNESLQLDLFSEPEEQISEMELNYLIDKIRQKFGFQALIHASSLLEGATAI HRSGLVGGHAGGNVGLGG >gi|307679287|gb|GL456440.1| GENE 10 7397 - 7786 526 129 aa, chain + ## HITS:1 COG:no KEGG:EF1081 NR:ns ## KEGG: EF1081 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 129 1 129 129 232 98.0 3e-60 MKRTKKEFTPYNEYHDRPFELKWATAFALGELQEGIEASDEYSKRAFERLPQQTTEEIEE YLEQSLKNNQVLEIQLNTLDDFGRVQPPIVGVFEGMSSMEYAKVGHTHILFEEIRHIKSH KFTKWSSLD >gi|307679287|gb|GL456440.1| GENE 11 7873 - 8055 269 60 aa, chain + ## HITS:1 COG:no KEGG:EF1082 NR:ns ## KEGG: EF1082 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 60 1 60 60 82 98.0 8e-15 MGHHLKGHHGKKTNANGGFLTKLLAGGALVGVGKKLYDNREKIKELLSDDKEKSNDTENK >gi|307679287|gb|GL456440.1| GENE 12 8073 - 8378 377 101 aa, chain + ## HITS:1 COG:no KEGG:EF1083 NR:ns ## KEGG: EF1083 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 101 1 101 101 159 100.0 3e-38 MVKDAAYIIEEITTILEGTYFVITKKANKRRMCLHVSDTAKEFLRCRLEYETFLEQQFDY ATMFLETCTEDVSVEIQTGLLEETNYQALTVEKLQQIATKM >gi|307679287|gb|GL456440.1| GENE 13 8431 - 8862 477 143 aa, chain + ## HITS:1 COG:BH3184 KEGG:ns NR:ns ## COG: BH3184 COG0589 # Protein_GI_number: 15615746 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Bacillus halodurans # 3 143 1 141 147 101 38.0 6e-22 MSVYQHILVALDGSDQSEKAFHEAVRIAKEEQATLYLATIINDAEFTTSPFSFEELYDLE KHKSEEVLTEKAKQASEIGVKTVKKIVELGSPKRYLANTISENYAIDLIVLGATGRGAIQ RTLIGSTTDYVVNHALCNVLVVR >gi|307679287|gb|GL456440.1| GENE 14 8933 - 9175 249 80 aa, chain + ## HITS:1 COG:no KEGG:EF1085 NR:ns ## KEGG: EF1085 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 80 1 80 80 107 100.0 2e-22 MKTKIGKTVILSAFLFTSFLLLSGCTSAGEEMEKTIDRQKEKVDKTVDKQKHKNENSMES YDEKVDRSLDSQEDKIDTTE >gi|307679287|gb|GL456440.1| GENE 15 9545 - 9991 460 148 aa, chain + ## HITS:1 COG:BS_bltD KEGG:ns NR:ns ## COG: BS_bltD COG0454 # Protein_GI_number: 16079713 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 1 141 1 148 152 127 44.0 5e-30 MEIHFEKVTSDNRKAVENLQVFAEQQTFIESMAENLKESDQFPEWESAGIYDGNQLIGYA MYGRWQDGRVWLDRFLIDQRFQGQGYGKAACRLLMLKLIEKYQTNKLYLSVYDTNSSAIR LYQQLGFVFNGELDTNGERVMEWTYQNK >gi|307679287|gb|GL456440.1| GENE 16 10130 - 10843 540 237 aa, chain + ## HITS:1 COG:SSO1074 KEGG:ns NR:ns ## COG: SSO1074 COG2761 # Protein_GI_number: 15897941 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis # Organism: Sulfolobus solfataricus # 1 206 3 208 225 91 28.0 1e-18 MKIEFFHDIICSFCFPMSDRMHEIQQEFPEIELIHRSFALGWSANDFETMFGSRAAVKEE VLTHWVHANQNDSKHRFNIEGMRKQRFDFPTSKNALLAAKAAGYIGNQDTYWLLFDKLQE GLFMRSLNIEEPEVIEELVKETTIDFALWKEAVASEAVWTAVQEDFALASAYGLQGVPAL IINQKYLINGAVPKQQISQTIQKILAEEKQQQPLVSLTPSSEESASCEFKEGTWTCH >gi|307679287|gb|GL456440.1| GENE 17 10914 - 11309 320 131 aa, chain + ## HITS:1 COG:no KEGG:EF1089 NR:ns ## KEGG: EF1089 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 131 1 131 131 225 100.0 4e-58 MFNAYREYWNNITTMNASATRAQYWWPQLINYLVLGIYSAITGVYRYIEVTPNDGTIIKE WNTVTIIFFLLTALIWLANFTVRARRLHDRDHSNWWILFYLLPFIGTLVIFITLILPSKS HTRWPVNQSEI >gi|307679287|gb|GL456440.1| GENE 18 11495 - 12916 1198 473 aa, chain - ## HITS:1 COG:no KEGG:EF1090 NR:ns ## KEGG: EF1090 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 473 1 473 473 853 99.0 0 MIRFLEKNYRKMEEIIRVLSISDKWMTKKELAKYIGSSESTFIRYIEEIKQRWGESLTIK TSHKLGYRLENFNVSLYLNVLTDMAKTSTTTQLLHEFIQNPGKTIEYYCDTINISRSSFA RKLKQCNQVLETYSLRVIVDQGYQLTSQTEELPLRIFTTFFFLMYYGHYELPYQLDKQEI KQLMRRNQCQLNIISMDNSYEHDFFIMYFIVDLLREHQGFQQRFQKKTDKKSPIKMEDYL LLSRHFTGLSRETYREVLWYFQRGAFQQYYSEDQEVISQRIRENLKFNAFSQIEQLTEEV VDFAVHLLTCLYLFSQLVPFDTSELTQRATFFTRQIHFTQLHLYARLKAELHFFSALLET NLLNYSSSYIFWLLNTFPEINQSFDSKKILIISDMGLNHSQYIGNYVHDILALHRIRSNT LAITEEQLGDHRLEEFDLIITNQPIIETSVPSILINDAILFSNKRELLDLLNF >gi|307679287|gb|GL456440.1| GENE 19 13244 - 16555 3264 1103 aa, chain + ## HITS:1 COG:BH0361 KEGG:ns NR:ns ## COG: BH0361 COG4932 # Protein_GI_number: 15612924 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Bacillus halodurans # 743 1033 1087 1356 1661 75 29.0 6e-13 MITDENDKTNINIELNLLNQTEQPLQREIQLKNAQFMDTAVIEKDGYSYQVTNGTLYLTL DAQVKKPVQLSLAVEQSSLQTAQPPKLLYENNEYDVSVTSEKIIVEDSAKESTEPEKITV PENTKETNKNDSAPDKTEQPTATEEVTNPFAEARMAPATLRANLALPLIAPQYTTDNSGT YPTANWQPTGNQNVLNHQGNKDGGSQWDGQTSWNGDPTNRTNSYIEYGGTGDQADYAIRK YARETTTPGLFDVYLNVRGNVQKEITPLDLVLVVDWSGSMNENNRIGEVQKGVNRFVDTL ADSGITNNINMGYVGYSSDGYNNNAIQMGPFDTVKNPIKNITPSSTRGGTFTQKALRDAG DMLATPNGHKKVIVLLTDGVPTFSYTVSRVQTEADGRFYGTQFTNRQDQPGSTSYISGSY NAPDQNNINKRINSTFIATIGEAMALKQRGIEIHGLGIQLQSDPRANLSKQQVEDKMREM VSADENGDLYYESADYAPDISDYLAKKAVQISGTVVNGKVVDPIAEPFKYEPNTLSMKSV GPVQVQTLPEVSLTGATINSNEIYLGKGQEIQIHYQVRIQTESENFKPDFWYQMNGRTTF QPLATAPEKVDFGVPSGKAPGVKLDVKKIWEEYDQDPTSRPDNVIYEISRKQVTDTANWQ TGYIKLSKPENDTSNSWERKNVTQLSKTADESYQEVLGLPQYNNQGQAFNYQTTRELAVP GYSQEKIDDTTWKNTKQFKPLDLKVIKNSSSGEKNLVGAVFELSGKNVQTTLVDNKDGSY SLPKDVRLQKGERYTLTEVKAPAGHELGKKTTWQIEVNEQGKVSIDGQEVTTTNQVIPLE IENKFSSLPIRIRKYTMQNGKQVNLAEATFALQRKNAQGSYQTVATQKTDTAGLSYFKIS EPGEYRMVEQSGPLGYDTLAGNYEFTVDKYGEIHYAGKNIEENAPEWTLTHQNHLKPFDL TVHKKADNQTPLKGAKFRLTGPDTDIELPKDGKETDTFVFENLKPGKYVLTETFTPEGYQ GLKEPIELIIREDGSVTIDGEKVADVLISGEKNNQITLDVTNQAKVPLPETGGIGRLWFF LIAISTFVIAGVYLFIRRPEGSV >gi|307679287|gb|GL456440.1| GENE 20 16559 - 17989 1453 476 aa, chain + ## HITS:1 COG:no KEGG:EF1092 NR:ns ## KEGG: EF1092 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 476 1 476 476 863 98.0 0 MKNARWLSICVMLLALFGFSQQALAEASQASVQVTLHKLLFPDGQLPEQQQNTGEEGTLL QNYRGLNDVTYQVYDVTDPFYQLRSEGKTVQEAQRQLAETGAMNRKPIAEDKTQTINGED GVVSFSLASKDSQQRDKAYLFVEAEAPEVVKEKASNLVVILPVQDPQGQSLTHIHLYPKN EENAYDLPPLEKTVLDKQQGFNQGEHINYQLTTQIPANILGYQEFRLSDKADTTLTLLPE SIVVKVAGKTVTTGYTLTTQKHGFTLDFSIKDLQNFANQTMTVSYQMRLEKTAEPDTAIN NEGQLVTDKHTLTKRVAVRTGGKSFVKVDSENAKITLPEAAFIVKNQAGEYLNETANGYR WQKEKALAKKFTSNQAGEFSVKGLKDGQYFLEEISAPKGYLLNQTEIPFTVEKNSYATNG QRTAPLHVINKKVKESGFLPKTNEERSIWLTIAGLLIIGMVVIWLFYQKQKRGERK >gi|307679287|gb|GL456440.1| GENE 21 17986 - 19869 2207 627 aa, chain + ## HITS:1 COG:no KEGG:EF1093 NR:ns ## KEGG: EF1093 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 627 1 625 625 1106 98.0 0 MKQLKKVWYTVSTLILILPLFTSVLGTTTAFAEENGESAQLVIHKKKMTDLPDPLIQNSG KEMSEFDKYQGLADVTFSIYNVTSEFYEQRAAGASVDAAKQAVQSLTPGKPVAQGTTDAN GNVTVQLPKKQNGKDAVYTIKEEPKEGVVAATNMVVAFPVYEMIKQADGSYKYGTEELAI VHIYPKNVVANDGSLHVKKVGTAENEGLNGAEFVISKSEGSPGTVKYIQGVKDGLYTWTT DKEQAKRFITGKSYEIGENDFTEAENGTGELTVKNLEVGSYILEEVKAPNNAELIENQTK TPFTIEANNQTPVEKTVKNDTSKVDKTTPNLDGKDVAIGEKIKYQISVNIPLGIADKEGN ANKYVKFNLVDKHDAALTFDNVTSGEYAYALYDGDTVIAPENYQVTEQANGFTVAVNPAY IPTLTPGGTLKFVYFMHLNEKADPTKGFKNEANVDNGHTDDQTPPTVEVVTGGKRFIKVD GDVTATQALAGASFVVRDQNSDTANYLKIDETTKAATWVKTKAEATTFTTTADGLVDITG LKYGTYYLEETVAPDDYVLLTNRIEFVVNEQSYGTTENLVSPEKVPNKHKGTLPSTGGKG IYVYLGSGAVLLLIAGVYFARRRKENA >gi|307679287|gb|GL456440.1| GENE 22 19963 - 20817 803 284 aa, chain + ## HITS:1 COG:SP0466 KEGG:ns NR:ns ## COG: SP0466 COG3764 # Protein_GI_number: 15900382 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Streptococcus pneumoniae TIGR4 # 22 284 1 259 279 180 40.0 3e-45 MKSKKKRRIIDGFMILLLIIGIGAFAYPFVSDALNNYLDQQIIAHYQAKASQENTKEMAE LQEKMEKKNQELAKKGSNPGLDPFSETQKTTKKPDKSYFESHTIGVLTIPKINVRLPIFD KTNALLLEKGSSLLEGTSYPTGGANTHAVISGHRGLPQAKLFTDLPELKKGDEFYIEVNG KTLAYQVDQIKTVEPTDTKDLHIESGQDLVTLLTCTPYMINSHRLLVRGHRIPYQPEKAA AGMKKVAQQQNLLLWTLLLIACALIISGFIIWYKRRKKTTRKPK >gi|307679287|gb|GL456440.1| GENE 23 20884 - 21177 196 97 aa, chain - ## HITS:1 COG:no KEGG:EF1095 NR:ns ## KEGG: EF1095 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 97 1 97 97 124 97.0 1e-27 MRAKLFLILRNRVLSRVVFVILFLHVFFTTNDFTVLLLLLLLNYLLTIEDSAKKNRKIQT WQEFKQSIDWPFVAFYSGLALLVISLILLFLWFNYAR >gi|307679287|gb|GL456440.1| GENE 24 21372 - 21575 389 67 aa, chain + ## HITS:1 COG:CAC0976 KEGG:ns NR:ns ## COG: CAC0976 COG2155 # Protein_GI_number: 15894263 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 1 61 1 60 69 57 57.0 5e-09 MKYLDIIALILLIVGGLNWLLVGAFNFDLVATISGGATTPLAKIIYIIVGICAIYSIKFL APLFREP >gi|307679287|gb|GL456440.1| GENE 25 21935 - 22447 556 170 aa, chain + ## HITS:1 COG:no KEGG:EF1097 NR:ns ## KEGG: EF1097 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 170 1 170 170 288 100.0 6e-77 MELQVTKKAKFFCLAMALLMTLGIFISAGTSVYASDQLEDSEVEAVAKGLEEMYANGVTE DNFKNYVKNNFAQQEISSVEEELNVNISDASTVVQARFNWNALGSCVANKIKDEFFAMIS ISAIVKAAQKKAWKELAVTVLRFAKANGLKTNAIIVAGQLALWAVQCGLS >gi|307679287|gb|GL456440.1| GENE 26 23257 - 23562 366 101 aa, chain - ## HITS:1 COG:no KEGG:EF1098 NR:ns ## KEGG: EF1098 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 101 1 101 101 174 100.0 1e-42 MKNSYFDGGLATYIGTSILATLITVFTLGICAPWGICMMYNWKIKHTVIDGKRLYFDGTA MQLFGHWIKWLLLTIITLGIYGFWLNIRLQQWITKHTHTLS >gi|307679287|gb|GL456440.1| GENE 27 23897 - 25498 1388 533 aa, chain + ## HITS:1 COG:no KEGG:EF1099 NR:ns ## KEGG: EF1099 # Name: not_defined # Def: collagen adhesin protein # Organism: E.faecalis # Pathway: not_defined # 1 466 1 477 674 699 90.0 0 MTKSVKFLVLLLVMILPIAGALLIGPISFGAELSKSPIVDKVELDHTTLYQGEMTSIKVS FSDKENQKIKPGDTITLTLPDELVGMTENDGSPRKINLNGLGEVFIYKDHVVATFNEKVE SLHNVNGHFSFGIKTLITNSSQPNVIETDFGTATATQRLTIEGVTNTETGQIERDYPFFY KVGDLAGESNQVRWFLNVNLNKSDVTEDISIADRQGSGQQLNKESFTFDIVNDKETKYIS LAEFEQQGYGKIDFVTDNDFNLRFYRDKARFTSFIVRYTSTITEAGQHQATFENSYDINY QLNNQDATNEKNTSQVKNVFVEGEASGNQNVEMPTEESLDIPLETIEEWEPKTPTSEQAT ETSEKTDTTETVESSQPEVHVSPTEEENPDESETLGTIEPILPEKPSVTTEENGTTETAE SSQPEVHVSPTKEITTTEKKQPSTETTVETNKNVTSKNQPQILNAPLNTLKNEGSPQLVP QLLSEPIQKLNEANGQRELPKTGTTKTPFMLIAGILASTFAVLGVSYLQIRKN >gi|307679287|gb|GL456440.1| GENE 28 25623 - 27218 1300 531 aa, chain + ## HITS:1 COG:jhp0343 KEGG:ns NR:ns ## COG: jhp0343 COG1132 # Protein_GI_number: 15611411 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Helicobacter pylori J99 # 2 529 9 543 551 157 25.0 4e-38 MTKKIWSHFRKSFTWYILIGVIVSLCSALAIYFFQQLLDHYQKSFQLGLLVAYGTTIILI PLLSYCEQKPKAYLTNGIYFYLKKLSLIKMSKISYEEYLKLGAGALLQKVEVGAAAGRNI HLNFYGRLFRELIPETLFNLFFIALIDKKLLPAILIGYVIVFILTKILLKTLQNMKEKTL ISEEAMNATLIRGMTELVTFRINRKYKKEIENYALMAEENSQNITKMTMIHEFFFGFFAL LVALIKVSIVVLSFTNVVTLSLGGLVAIVMYIDRIYTPIAIFNVLFVQYNLDKVAYQRLE DFYKKEDDPDLVVPGKALPEIQTISLKDVCFSVDSQTIMSQQNRQFSMNKTYGLIGKSGT GKSTLIKLILGLLKPTEGTIYVNQFPLTQFNLEDYYEKVFYLSQDVPIFQGTLKENIVFN QEISDEQVIEAMYRFQLGELYERLPEGLNTIVSEKGMNFSGGEKQRIAFTRLAFTQAEIL ILDEATSALDEKTEEKVLQEVQEFTHNKLTILVTHRPKTLRFVDEIIDLNE >gi|307679287|gb|GL456440.1| GENE 29 27288 - 28022 597 244 aa, chain + ## HITS:1 COG:L103246 KEGG:ns NR:ns ## COG: L103246 COG0500 # Protein_GI_number: 15673455 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Lactococcus lactis # 1 233 1 242 247 146 39.0 3e-35 MNNNEQELAEFWDEFAEEYEEIQQESPFPIARELRDFLVQEGIFPCQTFLDIAGGTGRYL PFFQEQVTEYTLADISQRMLEIAEAKAQSNVVFLHQSQERLIETGKKFQVVFSAMNPALD TPEKVNALCQLSEKWCLIFRLVEEQDSLFSPFEQESNPQLNWMAKYKAFLKKEQRPFFTK KFFFEASEAISKDFFRNYFEEQWSVPILEQRIQEIFGSHEIKQNQHTVIYELIVISCKKT TSDY >gi|307679287|gb|GL456440.1| GENE 30 28019 - 28420 481 133 aa, chain - ## HITS:1 COG:no KEGG:EF1102 NR:ns ## KEGG: EF1102 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 133 1 133 133 210 85.0 1e-53 MKKIGAILLIGVLIVGGYISYRFYADTYKGEKAYAQVPLEIPERKQALNNQKQPVSGLYS LKYALTFVKSNGKTQVMDYERTDKNPQPLEPNAYIEATISKKRIIQSPVKIDKKEIPEKA FAQLNNRKTTSDN >gi|307679287|gb|GL456440.1| GENE 31 28532 - 29884 1456 450 aa, chain - ## HITS:1 COG:L18622 KEGG:ns NR:ns ## COG: L18622 COG1113 # Protein_GI_number: 15672791 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Lactococcus lactis # 3 443 2 441 446 541 71.0 1e-154 MSETQQTTLKKQLSSRHITMLALGGAIGAGLFKGSGEAIGIAGPSVLIAFLIGGAVLFIV MSGLGKLVLDGGDTHHGLSGLVRPFLGAHSADFIDWVYYSMWTINIIAEAVAAASFLQLW FPNIPAWFFVFILAILTTLINLYSVRLFAETEYWLAFAKISVIILLIIFGVYLVGQQMLG SGVFPTLQSITDHGGFAPHGMKGIVNSLLVVIYSYGGSELIAITVSEADDPKKAIPKAIR GVMGRIISFYIIPLFLLLIIFPWNTLAGTTVSPFVMVFEKMNIPFAADIVNFVIILALFS SINSGVYASSRLLYFRLKDKKGPMSKLAVLNKHQVPQRSVFFCASVLYLGVILSYFVGDE LFGYLAGSLSYTVLLIWILISAAAFVLSLKRGSLFEKSINLLALIILGLIFIGILFTNSL GVTLLTGLLYFVIFFSYRKKNDSFLLSDES >gi|307679287|gb|GL456440.1| GENE 32 30055 - 30240 225 61 aa, chain - ## HITS:1 COG:no KEGG:EF1104 NR:ns ## KEGG: EF1104 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 61 1 61 61 73 100.0 2e-12 MSAKRFIQLFICYAISMIVAILLTDLFNFSSPIAYLVVASIIGYVVITVPLTIMTLLKNK N >gi|307679287|gb|GL456440.1| GENE 33 30421 - 30726 215 101 aa, chain - ## HITS:1 COG:no KEGG:EF1105 NR:ns ## KEGG: EF1105 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 101 1 101 101 122 100.0 6e-27 MFISFNMFILLIVATILMIFLIIYLTVTGNDKNNKKKQKKETKRTTPTLNKKTTVPPSQK PNVVTDVAKKSEPEKQAVQRTQQSTTREDETSQFTRSQRHK >gi|307679287|gb|GL456440.1| GENE 34 31078 - 31839 849 253 aa, chain + ## HITS:1 COG:L174321 KEGG:ns NR:ns ## COG: L174321 COG0247 # Protein_GI_number: 15673715 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Lactococcus lactis # 1 245 1 246 256 364 72.0 1e-101 MKVSIFSTCVVDLLFPNVGQAMVEVLERYGCETVLPTSQTCCGQPTYNSGYVTESTTTLK NQIDSFDGADYVVGPAGSCVGMMKEYHKFLADDPIYGPKAQRLAERTYEFSQFLYRVLGV KDVGATLHGKATYHRSCHMTRILNERESPFVLLDHVKGLEMIPLGHLENCCGFGGTFSVK MPAISEQMVTEKMNDVIDTGAEILISADMGCLMNIGGKFNRDGKKIKIMHIAEVLNHEVD ESRMDQPQIISVG >gi|307679287|gb|GL456440.1| GENE 35 31852 - 33324 1387 490 aa, chain + ## HITS:1 COG:L175101 KEGG:ns NR:ns ## COG: L175101 COG1139 # Protein_GI_number: 15673716 # Func_class: C Energy production and conversion # Function: Uncharacterized conserved protein containing a ferredoxin-like domain # Organism: Lactococcus lactis # 1 487 1 490 490 773 72.0 0 MGLSTSNKPLSERIEESKKDVFMQKAVAKAQDAQWEKREGAREALGNWPQWRELGEQIRQ HTIQYLPDYLEEFSDNVAKRGGKVFFAQTAEEANEYVKQVVLEKKAKKIVKSKSMVTTEV DIDPMLLGLDDVSVMETDLAEFILQMDDWDEPSHIVFPSIHKNREQIRQVFAKKLGYQGD NDPVNLARCAREVMRKFFLEAEIGITGCNFAIADSGLINLNTNEGNADLTISIPKTQIVL MGMERIVPTMREAEVLDNLLARSAVGQNLTTYVTFAGQKNADESDGPEEFHVVILDNGRS KALGTAFQPVLQCIRCGSCLNVCPVYRHIGGHGYGSIYPGPIGAVLSPILGGYKQFGELP YASSLCGACTETCPVKIPLHELLIEHRKVMTDDLKMKHGFEDFQMRMVGKATGSPAMFKA AMKVDHAAAGILSKQKEITVENMYNHGGYLDKGPGLVKGWTDVRDLPRPPKSSENFRSWF KKHQEGEKND >gi|307679287|gb|GL456440.1| GENE 36 33317 - 34036 873 239 aa, chain + ## HITS:1 COG:L176579 KEGG:ns NR:ns ## COG: L176579 COG1556 # Protein_GI_number: 15673717 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 6 236 5 224 227 213 49.0 2e-55 MTNEAIQNREPFLQNLREKLGVEKQPVSAHPFEPINHLPEEQLADKTSAELLTIVKERVE TIHTNLVETTQENLLTTIQQIVAEFGGGNLLLPTDARFEAYGLADLAKSLEAVSVKQWQP GSEQREANIQTAAQANIAIAFAEFLLAESGTIVVESNAGQGRALHFLPKHYISIIPFSKL VPRSTQPAAFYTDKIEKGEKIGSAIHFISGPSNSGDIEMQLVVGLHGPLEVCYVVVMNR >gi|307679287|gb|GL456440.1| GENE 37 34257 - 34805 622 182 aa, chain + ## HITS:1 COG:lin1308 KEGG:ns NR:ns ## COG: lin1308 COG0681 # Protein_GI_number: 16800376 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Listeria innocua # 23 163 26 179 188 146 53.0 2e-35 MSLKSKELIKTVVFFACLALGLFLLRQFVFTPVVVRGHSMDPTLADGERVITLKNTEINR FDIITFPAPDEPDKNYIKRVIGLPGDTIAYKDDTLYINGKEVDEPYLDEFKKALTDGQPL TGDFSLKEKVPADSYFVLGDNRRNSKDGRVIGFIHKKDILGEVKFVMWPFSRFGPIPEVS KQ >gi|307679287|gb|GL456440.1| GENE 38 34916 - 38506 3538 1196 aa, chain + ## HITS:1 COG:lin2369 KEGG:ns NR:ns ## COG: lin2369 COG3857 # Protein_GI_number: 16801432 # Func_class: L Replication, recombination and repair # Function: ATP-dependent nuclease, subunit B # Organism: Listeria innocua # 1 1194 1 1157 1157 570 30.0 1e-162 MSVQFIRGTAVADLEAPLIQATKQWLEEDAQHEVFYLVPNHIKFEQEIQVLQKLRQLQTT TSDSITSTRLQVFSFYRLAWYYLQHTPFYSADVLSDAGAAMIFRKILVEAEEELKIFRGE INKPGFIQQLFQLYQEMREGNIEIAELYPFLEKQTENPKGQDLQLKFQDLTLIFTRFQLQ MSQYGYESAEIIQHLSEYLQTVDLSNVQFVISGYQQFTARELKLIEVLMAQAGSVKVALL LDKQYPHDLPDPRSLFYEAGQTYHQLYQLARQKQIPILSDYVEKKEVLITNPDLQGLNDY WIQSQEHLPPLSTTDWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRD LDCYENLLEPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTEL FMPMNQLATSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEA EEQEDVATMEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMW RLQAIEAGQLETARNHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKV PTAIDQVQVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQY LRGTTGRKIAQEPFVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFE KNETTIFDDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPL AKQVFESLTHQNIPEKIGEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDV FGLSPAATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTT SSRMNYIRYQLSQTIKKVSWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQG KIHVRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQ LVGQEAKPAGSLYLHVHNPTLSYEGKDDIEQQMLKKYQFDGLLMKDPDLLDHLDTSLQAK QSSLLFPIEESAKEQIKPGRRQEDKFVTEPELGALLSHNRNKFIEAGNQIIGGEVQLNPA YQGKERIACRYCPFRSVCDFDVMLKENNYHRIENLSKEEIMARLLNKDEEGATEDE >gi|307679287|gb|GL456440.1| GENE 39 38499 - 42293 3669 1264 aa, chain + ## HITS:1 COG:BS_addA KEGG:ns NR:ns ## COG: BS_addA COG1074 # Protein_GI_number: 16078127 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Bacillus subtilis # 8 1254 5 1232 1232 770 38.0 0 MSKTIPLRPANEQFTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRL LIVTYTEAAAREMKERIQVALQKAMNEEQNPERRRHFSRQIALLPTANISTLHAFCLTVI RRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSNDRSDDG LTNLIFSFYEFAKANPDPEAWINGLTQAYEVGDQLGESTLFQTYLKPLAVETLQRTLQRY EEMVTLTEGEEKLQKIWYLAQNEKEQTKQFLQFLERNDLESAYNLTELLSFERYPTVRAE ELKPTAEQAKQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAY GAEKRLKNLVDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQE SILYWLRRPLSAEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQYGQGKEGKRIILAENFR SRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKATESV EFPELQSPELLIEDKTEGELYVTALKIRELIDQNFLIYDKKLKTDRPITYQDIVLLTPTK KNNLTILDVFKSLEIPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPLAAVLRSPIVG LKENELVLIRLANKETSYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESLEKWREQARRNQ ISNLLWTIYRETAYLDYIGGLPVGKQRQANLYALVDRAAAYEKTTFRGLFQFVRFIEKMQ EKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLNERYIFEENLGV GIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLFLVGSYKDQAAM WKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVVVSNVPQVKKHP ANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLSFNYPFEVATRT TSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSKPKFLDTVQAPS AAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNLEQIVAFFDTAL GKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIELDNQCILYDYK TDHVKGTSLQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGGVIIDMQTGNVV DFIK >gi|307679287|gb|GL456440.1| GENE 40 42363 - 42707 473 114 aa, chain + ## HITS:1 COG:lin1183 KEGG:ns NR:ns ## COG: lin1183 COG1733 # Protein_GI_number: 16800252 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 6 109 2 104 107 101 52.0 4e-22 MEKVKTESFVLCPKFEKSFSILGKKWNGLIIDVLLERGPQRFGELKEKIPMLSDRVLVER LKELEAEGIITKAVRCGEGNRLEYFLTEKGEDLQLAMEQIQHWAEKWVKDEECS >gi|307679287|gb|GL456440.1| GENE 41 43026 - 44072 1395 348 aa, chain + ## HITS:1 COG:L0354 KEGG:ns NR:ns ## COG: L0354 COG0016 # Protein_GI_number: 15673911 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase alpha subunit # Organism: Lactococcus lactis # 1 344 1 344 346 539 72.0 1e-153 MTLQAQLEALRDNTLKEIAQVATLKELNQIRVETLGKKGPITEVLRGMKNLSPEERPVVG GFANEIRDLLTEAIEARKVVLENEALNAALKEESLDVTLPGKQMPQGTRHILTQVMEEIE DIFLGMGYQVVEGYEVESDHYNFERMNLPKDHPARDMQDTFYISDEMLIRTHTSPVQART MEKHDFSKGALRMISPGKVFRRDTDDATHSHQFHQIEGLVVDKNVTMGDLKGTLEVMMKK MFGEDRKIRLRPSYFPFTEPSVEVDVSCFKCGGAGCNVCKHTGWIEILGAGMVHPDVLQM SGIDPTEYSGFAFGLGPDRVAMLRYGVNDIRNFYQNDLRFLNQFKVKE >gi|307679287|gb|GL456440.1| GENE 42 44080 - 46503 3079 807 aa, chain + ## HITS:1 COG:SP0581_2 KEGG:ns NR:ns ## COG: SP0581_2 COG0072 # Protein_GI_number: 15900491 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase beta subunit # Organism: Streptococcus pneumoniae TIGR4 # 149 807 1 655 655 679 55.0 0 MLVSYKWLNEYVNLSNVTPQELADKMSVTGIEVEGVAVPEEGLKKIVVGEVKECVSHPNS DHLSICQVDIGEEELSQIVCGAPNVKAGIKVIVALPGSRIAGNQKIKKGKMRGEVSNGMI CSLEELGYSDNVVPKAYAEGIYYLPQEAVNGTPVFPYLDMDDAIIELSITPNRADALSMR GVAYEVGAIYRQTPQFNDPELKEDASDNVGNYVTVTVEDSQDAPAYQIRVIKDVTIAESP QWLQNRLMNEGIRPINNVVDVTNYILLLFGQPLHAFDYQKLDSKEILVRRATAAEELITL DGETRQLTEENIVITNGKTPVGLAGVMGGANSEISQETTTVALEAALFNPLSIRKTSKQF NLRSESSSRFEKGINQATVGLACDVAAAMIAELADGTVVSGTAVGSEVAVKEAQVAVTLE RINQYLGTALDEATVNEIFEALGFAYEVNQGAYEITIPPRRWDIAIEADIIEEVARIYGY DHLPSTLPSGETVAGSLTKAQHVTRQLKSLLEGHGTSEAISYALTTEEKSRQFMMKESQT TRLQWPMSEERSVLRMNLISGLLDDVAYNVARKNNNIAFYEVGRVFYQTEDPTKNLPTEE NHLALALTGNTMVKDWQTKATAVDFYTVKGLVESIVAVLGLTEKISYQATTAIPEMHPGR TAWIYLEDEVVGFVGQVHPTTAKAYDIPETYVAELNLQQLVATEAGGVTYEAVSKFPAVS RDIALLVDETVTNQELVKTISDNAGKYLKEIHLFDVYQGKKLGAGKKSMAYSLTFVNAEA TLVDEEINRSMEKVEKALIEKHQVEVR >gi|307679287|gb|GL456440.1| GENE 43 46701 - 47366 705 221 aa, chain - ## HITS:1 COG:SP0607 KEGG:ns NR:ns ## COG: SP0607 COG0765 # Protein_GI_number: 15900515 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 5 220 2 217 219 251 64.0 8e-67 MPFSEEMRQLLTANNFQFLFNGLKLTLYISFVSIILSTIFGTILAVLRNQTNGPLKLLAS IYVEVVRNIPNLLWIYVIFLIFKIKSTPAGIVSFTVFTTAALAEIIRGGLNGVDKGQIEA ARSQGFSNWQILYHIVLPQAIRNVLPAIVSQFVTVIKDTSFLYSVIALQELFGKSYILMG RYAQTGQVFTIYGIVALIYFIINFSISQFSRWLSRNWAKSY >gi|307679287|gb|GL456440.1| GENE 44 47378 - 48091 626 237 aa, chain - ## HITS:1 COG:SP0608 KEGG:ns NR:ns ## COG: SP0608 COG0765 # Protein_GI_number: 15900516 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 17 236 4 224 225 254 60.0 1e-67 MFLLANISWLEEGPFALYRWEALFQDWRIFGQAFLYTILLSLGAILVAFALGIFFGSLSA TKSKLLHAISRVYVEFFQNTPLLIQFIVVYYGFPLLSPLLSFSITTIAILCVGLYHGAYI SEVVRSGIGAVPRGQFEAAYSQGLTYGQTMRYVILPQAWRIMLPPLTNQVVNLIKNTSTV AIISGADVMFAANSWSSVNLNYIPAFALAGFLYFILCFPLANLARKMEEKNKKAYSR >gi|307679287|gb|GL456440.1| GENE 45 48137 - 48964 1153 275 aa, chain - ## HITS:1 COG:SP0609 KEGG:ns NR:ns ## COG: SP0609 COG0834 # Protein_GI_number: 15900517 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Streptococcus pneumoniae TIGR4 # 42 274 18 247 254 241 54.0 1e-63 MKKQNKWLAGLSLLVLAGIIVGCGSGNNDSTSKSASSNKTVTVEQLKKAGKIKVGVKEDI PNFGYMNPDTNKNEGMEPDIARLIAKEITGSEENVEFVGVTAKTRGPLLDNGELDMVIAT FTITDERKKTYNFTTPYYTDEIGFLVRKEDNFSSMKDLDGKTIGVAQSATTKENLEKKAQ EEGIKFTYQELGSYPELKTALTSKRIDAFSVDKSILSGYVDGKTEILKDGFSPQEYGITT KKANTELNDYLNGLIEKWEKDGTLEKIYQDWGLKN >gi|307679287|gb|GL456440.1| GENE 46 48999 - 49730 632 243 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 239 1 242 245 248 51 3e-64 MISLEHVNKYFGEHHVLKDITLNVEQGEKIVIIGPSGSGKSTLIRCMNQLEKVNDGSVVI DNIDITKPKAPIQKVRQKVAMVFQNFNLYAHKTIIDNLTLAPIKVMGVSKEEAVRTGMEY LERVGLADKASAYPSQLSGGQQQRVAIARALNMHPEIILFDEPTSALDPEMIQEVLDVMV DLSKQNITMVCVTHEMGFARQVADRVIFMDQGQIIEQGTPEHFFTSTENPRAKEFLSKII HNG >gi|307679287|gb|GL456440.1| GENE 47 49995 - 50822 836 275 aa, chain + ## HITS:1 COG:lin1200 KEGG:ns NR:ns ## COG: lin1200 COG0796 # Protein_GI_number: 16800269 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glutamate racemase # Organism: Listeria innocua # 6 270 2 265 266 325 58.0 4e-89 MRMSNQEAIGLIDSGVGGLTVLKEALKQLPNERLIYLGDTARCPYGPRPAEQVVQFTWEM ADFLLKKRIKMLVIACNTATAVALEEIKAALPIPVVGVILPGARAAVKVTKNNKIGVIGT LGTIKSASYEIAIKSKAPAIEVTSLACPKFVPIVESNQYRSSVAKKIVAETLQALQLKGL DTLILGCTHYPLLRPVIQNVMGSHVTLIDSGAETVGEVSMLLDYFDIAHTPEAPTQPHEF YTTGSAKMFEEIASSWLGIENLKAQQIHLGGNEND >gi|307679287|gb|GL456440.1| GENE 48 50815 - 52170 478 451 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|165937309|ref|ZP_02225873.1| non-canonical purine NTP pyrophosphatase RdgB [Yersinia pestis biovar Orientalis str. IP275] # 231 438 5 213 223 188 49 2e-46 MIRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWV AAEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVI QADGGTRTASITGAFVALRLAVNHLLMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDYA EDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEALYA LASEEVPSQDSEEKVIVIATRNPGKAKEFSSIFGEKGYTVKTLLDYPNLPDVEETGRTFE ENARLKAETIAEILQKPVLADDSGLIVDALGGMPGIYSARFAGEPTNDASNNAKLLHELT GVPKEKRQARFHCTLVFAEPKKESLVVEAEWPGEVGTIPRGEGGFGYDSLFYVPELGKTA AELSGEEKNKVSHRGQAVAKLKEQWEEWLKK >gi|307679287|gb|GL456440.1| GENE 49 52183 - 52695 538 170 aa, chain + ## HITS:1 COG:lin1203 KEGG:ns NR:ns ## COG: lin1203 COG0622 # Protein_GI_number: 16800272 # Func_class: R General function prediction only # Function: Predicted phosphoesterase # Organism: Listeria innocua # 1 168 1 168 174 159 47.0 2e-39 MKILVVSDNHCDRDCLVDLVNHYEGQVDALFHCGDSELEPTDELWQKLIVVQGNCDFYDE FPKTVTKKVGDQVIYMTHGHLANVRMGLTTLALQAEEAGATIALFGHTHVLGAERHNNIL FVNPGSIRLPRGPVQEKTYAIIESTPEQYLVQYYNKEHQPLERLKATFTK >gi|307679287|gb|GL456440.1| GENE 50 52789 - 53553 558 254 aa, chain - ## HITS:1 COG:BS_glcR KEGG:ns NR:ns ## COG: BS_glcR COG1349 # Protein_GI_number: 16080683 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Bacillus subtilis # 9 251 4 249 258 104 32.0 2e-22 MKSSLETIEKRQQNILALLQKNKQMTTYKLADVLNVSLSTIRRDLNVLETKNDIIRKYGY CIYNDQNQKDFDQSGPELLKQAIARVACSYLSDYDTVFINSSSTALNILHYLKADHLTIV TNNLKIATKPHVSQYNYILTGGELRFPKEVLVGDIAINTITATHADVCVIGCSGVSLEHG VTTKIFNEAKINELMIKQTTKVKILVADHRKIGLTSKFKIADITAFDCLITDKHCSSTLI TELRKTGLKVIQVD >gi|307679287|gb|GL456440.1| GENE 51 53747 - 54814 1147 355 aa, chain + ## HITS:1 COG:ECs5168 KEGG:ns NR:ns ## COG: ECs5168 COG2220 # Protein_GI_number: 15834422 # Func_class: R General function prediction only # Function: Predicted Zn-dependent hydrolases of the beta-lactamase fold # Organism: Escherichia coli O157:H7 # 1 355 3 356 356 483 62.0 1e-136 MSKSIHEITKESWLKATFPEWGTYLNEEINQTTVLQGTVALWWLGCTGIWLKTHENTNIL CDLWCGTGKQTHGNGLMKNGHQMMRMSGCQKMQPNLRTQPFVIDPFEIKEVDALVVTHIH SDHLDIHTAAAVHQNCPKALFIGPKEVVKTWQRWGVPAEKTRVIEPGQEIKVNDVNVVAL EAFDRTALITSDDPENTFKGKMPQDMNELAVNYLFETSGGTVYHAGDSHYSNLFAKHGNQ YAIDVCLGAYGENPRGITDKITSVDMLRMAESLNAKVVIPVHYDIWSNFMADPKEIMEIW KFKKDRLHYQFKPYIWQVGGKFVYPDDKDNLEFNFDRGFDDVFVKENDTPFPSFL >gi|307679287|gb|GL456440.1| GENE 52 54832 - 55290 489 152 aa, chain + ## HITS:1 COG:lin2929 KEGG:ns NR:ns ## COG: lin2929 COG1762 # Protein_GI_number: 16801988 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Listeria innocua # 21 149 20 146 148 84 37.0 5e-17 MLTYFWEQELIHYPDKEPVSWQEAIQESCLILLQKHVIDQSYVDEIIQCVETFGPYIIIA PEVAMPHSSEESAGVFGTAISFTKFKQAVTFTGDQEAKTATLFFTLAAQNPAEHLENIQQ LMDLLMTDGVIADLLATNTPMDFKEVMEKYQL >gi|307679287|gb|GL456440.1| GENE 53 55303 - 56790 1438 495 aa, chain + ## HITS:1 COG:SP2038 KEGG:ns NR:ns ## COG: SP2038 COG3037 # Protein_GI_number: 15901859 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 11 473 10 469 485 394 47.0 1e-109 MGEFLLNSWTYFATNVLTQPAYLIGFIVLLGYLLLRRPFYECLAGFLKATVGYFILSVGS GGLVNNFRPILVGLKERFNLQAMVTDPYFGQNAVDAGLMKTFGRTFGDVMILLLIAFIMN ILLVRFQKYTKLRAVFTTGNVQIQQAATAFWILLFCFPNLGRIEVLIFMGLILGCYWAVA SNLTVGITQELTEGAGFAVAHQQMFGIFIFAKLAEWLKKRDQKKHRSEKVDKKLEDIELP GFLSIFNENMVATSILMLFFFGIILLVLGQDYLIQAKFMQEGQSFFFYIMTTSLNFAVYL AILQLGVRTFVDELTQSFQGISNTILPGAVPGIDVAATFGFGSPNAVTIGFLFGALGQFL MIGLLILLKSPTIVIAGFIPLFFDNAVISVYANNRGGVKAACLFPFLSGLIQVGGSALFA TWIGLSQYGGYLGMFDWATAWPLFTIIMKVLGYVGVAVVVIGLLIIPQLQYRKNPEGYFM IVNDYEQYAKKFQEN >gi|307679287|gb|GL456440.1| GENE 54 56805 - 57104 448 99 aa, chain + ## HITS:1 COG:no KEGG:EF1128 NR:ns ## KEGG: EF1128 # Name: sgaB # Def: phosphotransferase enzyme II, B compnent SgaB # Organism: E.faecalis # Pathway: Ascorbate and aldarate metabolism [PATH:efa00053]; Phosphotransferase system (PTS) [PATH:efa02060] # 1 99 1 99 99 171 98.0 1e-41 MRILVSYANGSGTSLMMMRSVEKAMKELGVPITKIHHCAISEGKSSASQYDVVFTPVNFL QMFQQAEKRGVTVIGIKNVMSAKEIQEKYMASDRYQKSE >gi|307679287|gb|GL456440.1| GENE 55 57118 - 57756 801 212 aa, chain + ## HITS:1 COG:SP2035 KEGG:ns NR:ns ## COG: SP2035 COG0269 # Protein_GI_number: 15901856 # Func_class: G Carbohydrate transport and metabolism # Function: 3-hexulose-6-phosphate synthase and related proteins # Organism: Streptococcus pneumoniae TIGR4 # 4 211 6 220 221 256 60.0 2e-68 MKRPNLQIALDHNRLEDALADCMKVGEIVDIIEVGTILCLQEGQKAIRCLKRMFPNKTIV ADTKCADAGGTVARNVAQAGADFMTVICCATLPTMAAAQKEVRELQVELYGDWTMQQARQ WRELGINQVIYHQSRDALLAGGSWGEKDLNKVQELIDLGFEVSVTGGLTVETLELFQTMA VATFIAGRGITESKNPEQAAKDFQKKIDQIWK >gi|307679287|gb|GL456440.1| GENE 56 57761 - 58621 674 286 aa, chain + ## HITS:1 COG:sgbU KEGG:ns NR:ns ## COG: sgbU COG3623 # Protein_GI_number: 16131453 # Func_class: G Carbohydrate transport and metabolism # Function: Putative L-xylulose-5-phosphate 3-epimerase # Organism: Escherichia coli K12 # 3 283 16 295 297 299 53.0 3e-81 MARIGLYEKALPQNLTWTERLTWAKKLGFDFLEMSIDESDERLARLAWTPSQLQELSQLM VKEDFFIHSLCLSGHRRFPLGSLNKETREKGREILSQAIHLAHQLNIRVIQIAGYDVFYE EKTAETREFFLQGLKKGVEEAAQYGVILAVEIMDDPFMNSIQKFLEIKEQIPSPFLHVYP DLGNLSAWPENNPAVELEKGIAEIAAIHLKDTFAVTDTFEGKFREVTFGEGCVDFTGLLK TLKRLNYSGPFLIEMWNETDLNFQEKIQAAQQYLYPKLAEVGYYEQ >gi|307679287|gb|GL456440.1| GENE 57 58611 - 59321 579 236 aa, chain + ## HITS:1 COG:SPy0179 KEGG:ns NR:ns ## COG: SPy0179 COG0235 # Protein_GI_number: 15674384 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Streptococcus pyogenes M1 GAS # 7 236 5 233 234 293 60.0 2e-79 MNNKAIIQAMKQRVYEANLALPKLGLVKLTWGNVSEINRSLGIIVIKPSGVKYQEMSKEQ MVVTDLNGQLLETNALKPSSDLPTHLYLYQKMPEIGAIAHTHSLNSVTWAQAGRALPPCG TTHADAFYGAVPCTRALSESEIKENYEKETGKVIVETFHEQELDPLAIPGVLVYGHGPFT WGMTPEKAVENSLILDEICSMARLTEIINPAVEPIDHFLLDKHYLRKHGISAYYGQ >gi|307679287|gb|GL456440.1| GENE 58 59578 - 60066 654 162 aa, chain + ## HITS:1 COG:L110441 KEGG:ns NR:ns ## COG: L110441 COG0517 # Protein_GI_number: 15673261 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Lactococcus lactis # 1 149 1 147 153 108 38.0 5e-24 MIGTAVKELLLEKQETFLVPAENVANVMCLNPLSHAALVLSQVRYSKIPVLDKGDRFVGL IGLTDVVDKMFDLTSVDFEKLNEFTVADVMEVNVPVIGESWDLEEVLHLLVDASFLPVVD DNQRFKGIITRKEILKAVNHMAHELEKHHLVLPKSEEEMKVI >gi|307679287|gb|GL456440.1| GENE 59 60147 - 60848 1005 233 aa, chain + ## HITS:1 COG:BS_ykuQ KEGG:ns NR:ns ## COG: BS_ykuQ COG2171 # Protein_GI_number: 16078482 # Func_class: E Amino acid transport and metabolism # Function: Tetrahydrodipicolinate N-succinyltransferase # Organism: Bacillus subtilis # 1 233 4 236 236 287 69.0 1e-77 MDAYEIIQYIGDAKKQTPVKVTLKGQLKEVTFPETIKVFNNCKTGTLFGDWADVKPFLEA NKEKIEDYVVENDARNSAIPFLDLKDINARIEPGALIREKVEIGDQAVIMMGAILNIGAV VGAGTMIDMGAVLGGRATVGKHCHIGAGTVLAGVIEPPSAAPVVIENEVVIGANAVVLEG VRVGEGAVVAAGAVVVEDVPAHTVVAGVPAKVIKQIDDKTKSKTEILEELRKL >gi|307679287|gb|GL456440.1| GENE 60 60927 - 62054 1270 375 aa, chain + ## HITS:1 COG:SP2096 KEGG:ns NR:ns ## COG: SP2096 COG1473 # Protein_GI_number: 15901911 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Streptococcus pneumoniae TIGR4 # 5 371 3 371 376 455 59.0 1e-128 MEQEELIAIRRQLHQIPEIGLEEKETQAFLLNEINKMKQPYLQVRTWQTGILVFIEGKNP QKTIGWRADIDGLPIQEEVVSAFQSKRPGFMHACGHDFHMTIGLGVLKELSQQQPDNNFL FLFQPAEENEAGGMLMYEDHAFGEWLPDEFYALHVNPDLPVGTISTRVGTLFAATCEVNI TLKGKGGHAAFPHQANDMVLAATNLIQQAQTIVSRNVDPVVGAVVTFGTFHAGTACNVIA EEATLSGTIRTLTAETNEQTQRRIREISEGIAQSFQCEVTVHLDQKGYLPVVNEPACTTN LIEYMSKQATVQFQQAPVAMTGEDFGYLLSKVPGTMFWLGVASPYSLHSAKFEPNEEALL FGVEAVSGFLKSLDN >gi|307679287|gb|GL456440.1| GENE 61 62099 - 63019 1011 306 aa, chain - ## HITS:1 COG:SPy1897 KEGG:ns NR:ns ## COG: SPy1897 COG0668 # Protein_GI_number: 15675710 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Streptococcus pyogenes M1 GAS # 45 299 19 270 281 198 42.0 9e-51 MLILGLASTETVDSSAPDLAEATVKKVSALQRFWNNINWDAIVATLIEKSLSILFLIFLF FIIQRIGKYLIDRTYANYSKKQHFSESRLKTLHTLIINAFQYTLFFFFIYSLLTIVGVPV GSLLAGAGIAGVAIGLGAQGFMNDLITGFFIILEQQMDVGDYIRLLALNIEGTVTSVGLR TTQIKAVDGTVHFIPNRNITTISNLSRANMQVLIDVRINPEEGYEKICEVITEVNETLKE KYIESIQTGPDIFGMVDLGNGNFAVRTTMYVLNGKQFAVKEEFLAQYIKALTEAGFTIPN TPIIAK >gi|307679287|gb|GL456440.1| GENE 62 63189 - 63551 198 120 aa, chain + ## HITS:1 COG:no KEGG:EF1137 NR:ns ## KEGG: EF1137 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 30 120 1 91 91 160 98.0 1e-38 MKVSIEWAKNDLLSKLPVTIFIDERCATRLTADKRRTFIFHNPVALRLGSRFFSSQIIEI AESCTLKVSFNWSCVYLFCIWLLAVKLWIGSVSGRTIVVVALIGVLTYWRRYLLKIKKMT >gi|307679287|gb|GL456440.1| GENE 63 63628 - 64452 1114 274 aa, chain + ## HITS:1 COG:lin0819 KEGG:ns NR:ns ## COG: lin0819 COG0656 # Protein_GI_number: 16799893 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Listeria innocua # 1 274 1 274 274 370 63.0 1e-102 MTLDKTKKLANGNEMPRLGLGVWRVEDGSEATNSVKWALKAGYRLIDTAAVYKNEVGVGE GIRQSGIPREEIFVTTKLWNEDQGYENAIKAFDKSLEKLGLDYVDLYLIHWPVAGKYKES WKALEEIYASGRAKAIGVSNFHQHHLEDLLTEANVVPMVDQIELHPTLTQEPLRKYLAEN KIAVEAWSPLGQGNLLSEPVLVKIGEKYGKSAAQVIIRWHLQNDIIVIPKSVHEKRIQEN FAVFDFELTPEEITAINQLNKDHRFGADPDNFDF >gi|307679287|gb|GL456440.1| GENE 64 64503 - 65225 727 240 aa, chain - ## HITS:1 COG:SP1089 KEGG:ns NR:ns ## COG: SP1089 COG2071 # Protein_GI_number: 15900957 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferases # Organism: Streptococcus pneumoniae TIGR4 # 1 240 1 229 229 210 46.0 2e-54 MTKKIIGIAGNQLLQAAEVFHGNQVTYTPQGFVSAVQAAGGVPLVLPIGPKELAATYIQQ IDKLLLAGGQDVAPEFYGQEPHIKLEETNRDRDEFELALIEEALKQNKPIFAVCRGMQLV NVALGGTLYQDLSMYPQWSVKHGQQPTQPIFATHRIDVEPDSQLSNIYGTTGQVNSYHHQ ALHTLGKDLRVTAWSSDGLAEAVESTNEQQPLLAVQWHPELMYARDAKSQALFNYFVQKL >gi|307679287|gb|GL456440.1| GENE 65 65368 - 65748 460 126 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148984704|ref|ZP_01817972.1| 50S ribosomal protein L20 [Streptococcus pneumoniae SP3-BS71] # 1 126 1 126 126 181 65 3e-44 LTMKMAHTCVRVKDLEASLDFYQKAFNFEESRRRDFPENKFTLVYLTLPGDDYELELTYN YDHEAYDLGNGYGHIAISTDDLEGLHEKHQAAGLTVTDLKGLPGTAPSYYFVVDPDGYKI EVIRER >gi|307679287|gb|GL456440.1| GENE 66 65891 - 66337 378 148 aa, chain + ## HITS:1 COG:L99869 KEGG:ns NR:ns ## COG: L99869 COG0494 # Protein_GI_number: 15674214 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Lactococcus lactis # 4 144 5 144 146 160 56.0 7e-40 MKTPTFGKREETLTYQTRYAAYIIVSKPENNTMVLVQAPNGAYFLPGGEIEGTETKEEAI HREVLEELGISVEIGCYLGEADEYFYSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLH WVAPEEAVRLLKRGSHRWAVEKWLAASS >gi|307679287|gb|GL456440.1| GENE 67 66401 - 67213 1027 270 aa, chain - ## HITS:1 COG:SP1291 KEGG:ns NR:ns ## COG: SP1291 COG0561 # Protein_GI_number: 15901151 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Streptococcus pneumoniae TIGR4 # 1 269 1 268 268 277 53.0 1e-74 MSIKLVAIDIDGTLLNSQHKITPRVKEALQKANEQGVRIVLCTGRPLPGVKEQLDELALY GENDFVITYNGSLVQATKDNTIISRYTLSYEDFLEIEMYSRKVGAHLHTIDDSAIYTANR NIGKYTIHEASLVNMPLKYRTVDEMTPEMNIIKMMMIDEPEVLDPAIAKLPLHFTEKYTT VKSTPFYYEIMNKNASKGNALAKLADHLGLNKDEVMAIGDNENDLSMIDYAGIGVAMGNA TENVKTIADVHTTSNDEDGVAQIIEKMVLI >gi|307679287|gb|GL456440.1| GENE 68 67232 - 68602 1466 456 aa, chain - ## HITS:1 COG:SP1290 KEGG:ns NR:ns ## COG: SP1290 COG1078 # Protein_GI_number: 15901150 # Func_class: R General function prediction only # Function: HD superfamily phosphohydrolases # Organism: Streptococcus pneumoniae TIGR4 # 13 449 3 426 434 538 62.0 1e-152 MTIPYKEQRLPIEKVFRDPVHNYIHVQHQVILDLINSAEVQRLRRIKQLGTSSFTFHGAE HSRFSHSLGVYEITRRICEIFQRNYSVERLGENGWNDDERLITLCAALLHDVGHGPYSHT FEHIFDTNHEAITVQIITSPETEVYQILNRVSADFPEKVASVITKQYPNPQVVQMISSQI DADRMDYLLRDAYFTGTEYGTFDLTRILRVIRPYKGGIAFAMNGMHAVEDYIVSRYQMYV QVYFHPVSRGMEVILDHLLHRAKELFENPEFDYDLQASLLVPFFKGDFTLQEYLKLDDGV LSTYFTQWMDVPDSILGDLAKRFLMRKPLKSATFTNEKESAATIAYLRELIEKVGFNPKY YTAINSSYDLPYDFYRPNKDRHRTQIELMQKDGSLVELATVSPLVAALAGQSQGDERFYF PKEMLDQGNKKHYDLFDETYREFSSYIHNGALVLKK >gi|307679287|gb|GL456440.1| GENE 69 68599 - 69450 836 283 aa, chain - ## HITS:1 COG:SPy1220 KEGG:ns NR:ns ## COG: SPy1220 COG0095 # Protein_GI_number: 15675184 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Streptococcus pyogenes M1 GAS # 28 240 33 248 283 194 46.0 2e-49 MSTTFPLHTESFMLLDSGCLTNSDYFLPFALTDVLTTFSGMQHQPIIHFWQLDQAMILGM KDTRVPHLKEGIASLQENDYSVVVRNAGGLGVMADSGILNVSLILPNNSEHKLSIDAAYE LMWAWLRQSFPEKEIDAFEITTSYCPGTYDLSIGGQKFAGIAQRRVKDGIAVMIYISVNG NQLARGEVVRDFYLAGLQEQFGENGYPPVDPAVMANLETLIETPLTIDAVKTRLIEALPQ QFEKSIDPNLTEPIITSEWFQTNLTVQLEKMAQRNALIKGEIV >gi|307679287|gb|GL456440.1| GENE 70 69746 - 70183 628 145 aa, chain + ## HITS:1 COG:SA0563 KEGG:ns NR:ns ## COG: SA0563 COG4506 # Protein_GI_number: 15926284 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 9 143 9 137 142 58 33.0 4e-09 MDLSTGVPVSIQLKTIVQQGNEQKDFFFDLEGQLVKMGDTLYIRYKEELLEDTEPTPVTI KIEPDGHVQLIRAGELRMRLRFGYQEKLDTSYRTPYGLLQISTFTHNLRVSLKDQPMSGK ILVDYDLYSQTERIGEYHLELEFTA >gi|307679287|gb|GL456440.1| GENE 71 70260 - 70877 943 205 aa, chain + ## HITS:1 COG:SPy1895 KEGG:ns NR:ns ## COG: SPy1895 COG3343 # Protein_GI_number: 15675708 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, delta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 171 1 170 191 116 55.0 3e-26 MEINVFEGLNKKELSMIEVAHAILEQHADVMDFSDLVNQIQNYLGKSDSEIRDQLAQFYT DLNIDGSFISLGDNRWGLRSWYPIDSIDEEVTHGLEEDEEDAPRRRKRKKVNAFITNPND EDVIDYNDDDPEDAELTNDDEEDILYDDEEDEDEEIKAYNSDLQEIGADSDDDEEDIPQI EEDLTIIDDDDVEDEDDFDDEYSEE >gi|307679287|gb|GL456440.1| GENE 72 71185 - 72795 2158 536 aa, chain + ## HITS:1 COG:SP0494 KEGG:ns NR:ns ## COG: SP0494 COG0504 # Protein_GI_number: 15900408 # Func_class: F Nucleotide transport and metabolism # Function: CTP synthase (UTP-ammonia lyase) # Organism: Streptococcus pneumoniae TIGR4 # 2 532 3 533 535 878 79.0 0 MTKYIFVTGGVVSSIGKGIVAASLGRLLKNRGLKVTIQKFDPYINVDPGTMSPYQHGEVF VTDDGAETDLDLGHYERFIDINLNKYSNVTTGKIYSEVLRKERKGEYLGATVQVIPHITN EIKEKIMRAAKMTDADVIITEVGGTVGDIESLPFLEALRQMKADMGSDNVMYIHTTLIPY LKAAGEMKTKPTQHSVKELRSLGIQPNILVVRTELPVSQNTKNKLAQFCDVNPEAVIESR DVETLYSIPLALQAQNMDQIVCDHLKLDAPAADMTEWRALEEKVLNLKKKTKIALVGKYV ELPDAYISVVEALKHAGFDFDSDIEIDWVDSQELTAENVAERIGSADGILVPGGFGDRGI EGKIEAIRFARENDVPFLGICLGMQMACVEFGRNVVGLEDAGSAETNPDVTNNIIDLMAD QENIENLGGTLRLGLYPCKLKKGTKTAAAYGNEDVVQERHRHRYEFNNKYRQLFEENGLV FSGVSPDNRLVEIVEIPEKQFFVACQFHPELISRPNRPQRLIKGFVGAALANKESK >gi|307679287|gb|GL456440.1| GENE 73 72879 - 75215 2427 778 aa, chain - ## HITS:1 COG:SP0369 KEGG:ns NR:ns ## COG: SP0369 COG0744 # Protein_GI_number: 15900292 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Streptococcus pneumoniae TIGR4 # 41 697 17 662 719 624 53.0 1e-178 MPTANSGSRAARHASNTSSKSSYKKKTQPPKKKKRVVLKIFLGLLIAGMVAFLAGVGLFW FYARQAPKLEDDKLNATVSSKLYDINNEIFEDLGAEKRELIQPNDVPQLLKDAIVSVEDR RFYKHIGVDPIRIIGSALSNVKNGGLQGGSTLTQQLIKLSYFSTKESDQTLKRKAQEAWM AVRLEREKSKEEILTYYINKVYMANGFYGMETAAENYYGKHLSELDLPQTALLAGMPQAP NSYDPYTKPDTAKERRDVVLYTMYDNKKISKAEYEKAKATPIDEGLVPLKASDDNRKVVD NYVKEVINEVKAKTGKNVYTDGLDIYTNLDMNAQKQLYDIVNSDQYVAFPDDKMQVASTV IDVASGQVRAQIGGRHIPDDVQLGNNLAVNTQRDVGSTVKPIMDYGPAIENLNYSTGRLM VDKPTKYPGTDIDVFNSDLTYQGVITMRRAIMGSRNTTAVQTFDEVGKENIMPFIKGLGI DYKNLEASNAISSNTSDVDGDKYGISSLKLAAAYAAFANNGIYNKPYYVNKVVFNDGTSV DYQPDGKRAMKDSTAYMMTDMLKDVLNGGTGFNGAIPGLIQAAKTGTSNYTDEDLARMGT TEKGIAPDSTFVGYTTHYAVSVWTGYNDRNTPIYQEYYGIASDVYREIMSYLSQNVSNDD WVQPDSVVRVGNELYVKDAYEVPNVQVLPSTTSSAPQPESSSTVESSSTKEAESSSSSSS ESAPSSSEAPPSTEQPASSSSAEQPATSEQPPEPSSSSSQEPPQPPESSSKPDENKAA >gi|307679287|gb|GL456440.1| GENE 74 75257 - 75874 385 205 aa, chain - ## HITS:1 COG:SPy1648 KEGG:ns NR:ns ## COG: SPy1648 COG3331 # Protein_GI_number: 15675520 # Func_class: R General function prediction only # Function: Penicillin-binding protein-related factor A, putative recombinase # Organism: Streptococcus pyogenes M1 GAS # 9 200 2 191 199 210 55.0 2e-54 MTFHYPNGIPYNHHEAQSPKKQVKKKRPVEFGNRGMDFEEAINQSNQYYLLNKQAVVHKK PTPVQIVKVDYPKRSAAVIKEAYFRQASTTDYNGVYQGRYIDFEAKETKNTTSFPFKNFH QHQIDHMEQCIAQQGICFVLLWFSSLKRCFFFSGENLITHWKNQAVTGKKSMPLALIEKE GIELSFGIAPRIPYLDAVEQYIQTH >gi|307679287|gb|GL456440.1| GENE 75 75937 - 76479 647 180 aa, chain + ## HITS:1 COG:BH1768 KEGG:ns NR:ns ## COG: BH1768 COG4474 # Protein_GI_number: 15614331 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 4 175 1 172 189 153 43.0 2e-37 MEMIKTLYVTGYRSFELGIFQGKDPKITVIKNVLKKELASYIETGVEWILISGNLGVELW TAEVVGELKTEYPEVQLGLLYPFKDFGNNWNEQNRELLTKAESLADYINSVSHQPYQSPA QLKMHTKFLLEHSGGSLLIYDKEYPGKTEYFLKDAQHFSEREPYDIRLITMDDLQNSVID >gi|307679287|gb|GL456440.1| GENE 76 76573 - 76983 544 136 aa, chain + ## HITS:1 COG:lin2002 KEGG:ns NR:ns ## COG: lin2002 COG3599 # Protein_GI_number: 16801068 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division initiation protein # Organism: Listeria innocua # 9 106 13 111 113 89 54.0 2e-18 MANLVYSPKDILQKEFKTKMMNGYDPIEVDEFLDNVIKDYEAYNKELLSLQEENSRLMAK LDQLSKAQPTPRVAQEVPKSAAVTNFDILKRLSNLEREVFGKKLDETPSTPVTPSAPSMT AEPANHDVDNAQTRQF >gi|307679287|gb|GL456440.1| GENE 77 77006 - 77185 123 59 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MISLSTNTTSISACASMDFPQLAKANRDHPKITNLFRRTAKIYTLQQVSAILTNAFCSL >gi|307679287|gb|GL456440.1| GENE 78 77697 - 78860 1341 387 aa, chain + ## HITS:1 COG:lin2000 KEGG:ns NR:ns ## COG: lin2000 COG0116 # Protein_GI_number: 16801066 # Func_class: L Replication, recombination and repair # Function: Predicted N6-adenine-specific DNA methylase # Organism: Listeria innocua # 5 387 2 382 382 533 68.0 1e-151 MTKEKTFKLVATAASGLEALVGKELRDLGIPCEVENGRAVFEGTVETIATANLWLRTADR IKIVVGEFNAYSFDELFEKVKALPWEDYLPLDAEFPVAGKSIKSKLYSVPDCQAITKKAI VNRLREVYHRPATVPLTETGALFKLEVALLKDKVTLTLDTTGPSLFKRGYRIEKGGAPLK ENMAAALVMLTNWRKDRPFYDPVCGSGTICIEAALIGHNIAPGFNRSFTCETWDWVDPAI FEKVRNEAEAKADYDVELDICGSDVDGRMIEVARANAEEVGLGDSITFKQLALKDFTTEK EYGVMVANPPYGERLGEEESVRRLYKEMGHVFRPLTTWSKYILTSDLAFEEYYGAKATKK RKLYNGALRTDLFQYWGTRPPRKPRED >gi|307679287|gb|GL456440.1| GENE 79 78879 - 80375 1685 498 aa, chain + ## HITS:1 COG:lin1999 KEGG:ns NR:ns ## COG: lin1999 COG2317 # Protein_GI_number: 16801065 # Func_class: E Amino acid transport and metabolism # Function: Zn-dependent carboxypeptidase # Organism: Listeria innocua # 3 496 6 499 502 499 49.0 1e-141 MKEAVFLQEVKEIQLLKNALTLLDWDSSTGMPEKSSPFRGEVEGYLTGLYFERSIGPVIQ EALAYFETRPEELSELGKLVFEKVKEEYALNKNVPAERMQEYVKVLNQAHTDWLKARAAQ DFGLLEETLTKVVAFQKEFIPYWQKEEKTPYDVLLNQFEPGMTVEKLDQVFDQVKQGIQE IRTVLAEKGTPPRTDFLSRKMTKEQQRRFVIGVVEQLGYDFSKGRLDDTVHPFMTALNRN DARITTRWEENNFSMATFGVIHEAGHGMYEQNFDPKFDFTPLSEGASMGIHESQSLFNEI IIGSNRAFWQKQYPFFQECAEGTFDDIAFEDFYASLKETKASLIRIDSDSLTYPLHIIIR YEIEKMLFNGSLEVADLPKVWNEKYQEYLGVSPENDLEGVLQDVHWSGGSFGYFPSYALG YMYAAQLFHAMKQELSVDEILASEDYSDIRKWLTQHIHQYGASRKPNQLIYDATGEELNP GYLIDYMKAIYFDVYQVQ >gi|307679287|gb|GL456440.1| GENE 80 80408 - 81124 936 238 aa, chain + ## HITS:1 COG:BS_dnaD KEGG:ns NR:ns ## COG: BS_dnaD COG3935 # Protein_GI_number: 16079292 # Func_class: L Replication, recombination and repair # Function: Putative primosome component and related proteins # Organism: Bacillus subtilis # 9 232 11 230 232 124 35.0 2e-28 MLSIREYLEAGETTISNLLFDHYQKIGLKDDEFLFLLQLFRSQNAGDLFPDLMAIAETMG KTPDTIYKLLNQLVSRGFIRIETQQNQKGQMMDTYDLLPVFQKIQLFLQTSKEKQVVANH EDEIKQLYQGFEKEFGRPLSPIELEMIGQWLNTDHYSPELIRLALREAVLNQAYSLKYID RILLAWERKNITTKEQVAADQKKRKDSMIQNEIEQQGQTQESLPKVTLHNWLNPEDSE >gi|307679287|gb|GL456440.1| GENE 81 81139 - 81786 696 215 aa, chain + ## HITS:1 COG:BH1698 KEGG:ns NR:ns ## COG: BH1698 COG0177 # Protein_GI_number: 15614261 # Func_class: L Replication, recombination and repair # Function: Predicted EndoIII-related endonuclease # Organism: Bacillus halodurans # 1 213 1 213 218 286 64.0 1e-77 MLSQEKTMEAIEIMYEMFPNAECELKHKNPFELLIAVILSAQATDVSVNKATPGLFAAFP TPEALAAAPVEEIIAKIKTIGLYRNKAKNIKACAQQLLERFNGEVPQTRDELVSLPGVGR KTANVVMGDAFGEPAFAVDTHVERVSKRLRICKLNANVTEVEQTLMRKVPKELWVKTHHT MIFFGRYHCLARAPKCEACPLLYMCQEGKERMKGK >gi|307679287|gb|GL456440.1| GENE 82 81960 - 82724 735 254 aa, chain + ## HITS:1 COG:BH3917 KEGG:ns NR:ns ## COG: BH3917 COG2188 # Protein_GI_number: 15616479 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 7 229 26 251 261 122 31.0 7e-28 MTENAPKFKQISAEIEKKIRDGLYVSAQKLPSEYDLAKEYNCSRLTIRKAIDDLIRKNIL VKRHGKGSYVMSQAKIQSGRAGLQGFTEAAKAYGKKSQTEVISFEEVVHPDEKIREALQV GKNEAIYELIRRRMLDGEPMTVEKIYLPQAYVQGHTKQDFEGSLFCLIEKNVEIAYSHQE IEAILVEAEISELLNVPVGQPLLQVHSITYALDATPILYDVSLYRADRYTFKNTLTRYSP SENNQVELGGSWNE >gi|307679287|gb|GL456440.1| GENE 83 82721 - 84019 1386 432 aa, chain + ## HITS:1 COG:CAC2723 KEGG:ns NR:ns ## COG: CAC2723 COG0624 # Protein_GI_number: 15895980 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Clostridium acetobutylicum # 2 429 3 463 465 258 34.0 2e-68 MKIKEEIAAQKDLFYEDLNKIMAIRSVKGSPKKEAPFGEGPKRALEETLKLAERYGFQTG IVNDAVGYAQWGTAEEYLGIIGHLDVVPEGSGWSVPPFQLTKKNQRLYGRGILDNKGPIL ACLYGMKLLKELGYQPKKTIRLMFGTDEESGSGDIPLYLEKENAPVSGFTPDCKYPVVYG ERGIVNYEITTTIPDDSSEQIGQIMGDQAKDHVPDQLSVVIAGKTTAITGKRAPSNAPEL GKNAITLLAQKISEEQLVKGNLLQYFDWLTASFHEKHYGEGVALDFKDQDSGQLILTPYA LEKRGQQLVLSLAVRYPVSITENEVTTQLTKALFPESEVTVIRRLPSTLFPKDERNVQKL TKVYEQITGLDGTPVTTTGATYARFMPNIVAFGPSFPGQKGIAHNQDEYMDEKDLLLNLE IYMQAMIALTEA >gi|307679287|gb|GL456440.1| GENE 84 84189 - 85142 1124 317 aa, chain + ## HITS:1 COG:CC2359 KEGG:ns NR:ns ## COG: CC2359 COG1446 # Protein_GI_number: 16126598 # Func_class: E Amino acid transport and metabolism # Function: Asparaginase # Organism: Caulobacter vibrioides # 4 281 20 313 327 142 33.0 9e-34 MTWGAIATWRMAHDGLLKATEELQQGGAAGTAVEQLIKEVEDYPFYKSVGYGGLPNEEGI LEMDAAYMDGDTFAIGAVAGITDVKNPISVAKALSKEKFNSFRVGAGATKYSMLHGFERK NMLTERANQWWQKRLKEIQENQLNPYDGHDTVGAITLDQTGSMAAGTSSSGLFMKKAGRV GDSPLSGSGFYVDSEIGGAAATGLGEDLMKGCLSYEIVRLMGEGRSPQQACDQAVYAFHE KLTQRYGKAGAFSLVAMNKQGDWGVATNVEFTFTVGTDMQQPEIYIANPGKNHTTEIQPI SQEWLAAYEKRIKAPIE >gi|307679287|gb|GL456440.1| GENE 85 85162 - 85491 521 109 aa, chain + ## HITS:1 COG:CAC0384 KEGG:ns NR:ns ## COG: CAC0384 COG1440 # Protein_GI_number: 15893675 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIB # Organism: Clostridium acetobutylicum # 5 104 3 100 102 79 46.0 1e-15 MSKKQIYLFCDAGMSTSIMVNKMMEVVEKHQMPLMITAFPIARAQEVVEAEKPVAILLGP QVRFLLEKTKEQFAPQGIPVAAIAPEIYGMMDGEKALKEALRLIKQNKK >gi|307679287|gb|GL456440.1| GENE 86 85510 - 86865 1467 451 aa, chain + ## HITS:1 COG:BS_licC KEGG:ns NR:ns ## COG: BS_licC COG1455 # Protein_GI_number: 16080909 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Bacillus subtilis # 1 430 1 433 452 342 40.0 1e-93 MQKFLDWLERVLTPLAKVIGENKYLVAIRDGFLLSTPLLIVGSVFLLIANFPLPQWDTWM SHLLGKDWATMMSVPASASFDVMTILAVVGIAYSLGKQFNVDAMQAGIIALVSFFIVTPY QTLFTPENSSKVYEVTSLPLKWMGSSGLFLGMIVALIATRLFVAIVRKGWTIKMPEGVPP TVVKSFEALIPSFLVVTLMFLVNWLAALTPYGNLQDVIFEFLQTPLLSLGNTLGAMSIAY LFLHFFWFFGINGGSVVGAVFNPVLRALSVENLQAFKDGHEIPNIITGQFQDMFATFGGA GSTLSLIIVMVLFCKSQRIKKLSQLSLIPGVFGINEPIIFGLPIVLNPILLIPFVLVPAI NIIIAYFAMDWGLVPLTNGIQLPWTTPPIISGFLVSGWQGSILQALLLVLGMFIYYPFIR VMDDQYLREEWKAQEEESEEIDFDSFDFDDL >gi|307679287|gb|GL456440.1| GENE 87 86883 - 87401 595 172 aa, chain + ## HITS:1 COG:no KEGG:EF1161 NR:ns ## KEGG: EF1161 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 172 1 172 172 324 100.0 1e-87 MKKILLVLNHSLAGFGSDEQAQLKPSGKKAPLGPGVTLLPFLQKQGAEIVATLYCGDQYY LENEEEVAKKFIGFAKKFHADAVLCGPAMHYPNFGEMAARLACKFNAAGIPAIAAMAEEN PAVSHYYQQVPIVKMPKKGGIGLNNSFKQMAQLVVAKANGKETKQLEETSCF >gi|307679287|gb|GL456440.1| GENE 88 87519 - 89900 2020 793 aa, chain + ## HITS:1 COG:lin0195 KEGG:ns NR:ns ## COG: lin0195 COG1199 # Protein_GI_number: 16799272 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Listeria innocua # 6 785 5 779 779 761 46.0 0 MKSTRKIAVRQVVEFILRRGSIDSRHVSEHTPQEGSRLHRMLQKEAGSLYQKEVSLKIEV PLNGHNYCVEGRADGIFVKETGQVVIDEIKTSEPAFEELPPEKVELFWYQVMCYGHMYCQ QEQLSEITLQLTYYQTTTKQITRQERHFTEAALAEFFTDLMKRYEQWVIFKEEWRILRNK SLKNLSFPYGEYRKGQRELAVAVYKTILSKQRLFVEAPTGTGKTMSTLFPAMKAIGEEEG ERIFYLTAKTITRQVAEDAVKALSEKQAQTKSITLTAKDKICFLTERNCTPEHCPFADGY YDRLNEGLWDLLQHENHLTREVIERYAQKHQLCPFELSLDASLWCDLIIGDYNYLFDPTV YLRRFFEEPQSAEENIFLVDETHNLVNRSREMYSAAISRNAVLQIQKRLQKESVQLKRAC QKVLTTFDDIEAICEEKDTDFFAQRAPIDSLVKQIHRLTEVIAEWLPENQHIEELASILS FYFDCLSYLRISEYYDNGFYTSISLRNYDCVVKQFCVDPAYLLSQRLDKGKASILFSASL TPLNYYQEVLGGGEESLRYRIPYPFPEENQLLMIGSHLQTTYKNREKSYPQISELLGKLS ETKTGNYLIFFPSYAYMDDVYQVFSQRYPQVKTQIQGTDLNEKEREAFLAEFKENPKETF IGFCVLGGIFSEGIDLKGTRLIGTIIVSVGLPQMNPEQELIRTFYQEERGQGFQFAYQIP GMNKVLQAAGRVIRDARDKGFVLLLDERFELPSVQRFFPPHWLAHRKANTNEQLIQQVKQ FWLKNKENKGGNK >gi|307679287|gb|GL456440.1| GENE 89 89897 - 90862 1108 321 aa, chain + ## HITS:1 COG:L142722 KEGG:ns NR:ns ## COG: L142722 COG0252 # Protein_GI_number: 15672718 # Func_class: E Amino acid transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D # Organism: Lactococcus lactis # 1 320 2 322 323 358 58.0 6e-99 MKTILVLHTGGTISMSKVAGGSVAPNEKNPLMEQEALFSGKVHLVVEDIFNIPSPHMTLE RMFQLKERIQKAYSEPIDGVVITHGTDTLEETAYFLDITLEKKIPIVLTGAMRSSNEIGS DGLYNFISAIWTACSDESYDKGVLVVMNDEIHTARYVTKTHTTNVATFRTPTFGPIGTIA KERAFFAKEVLPQEVCDVSSVKGNVHVVKAYAGMGERMFELLNTPETDGLVIEALGAGNL PPETLPALQKMLDNGIPVVLVSRCSNGIAEDIYDYAGGGVGLKKMGVVFARGLNGPKARI RLIVGLNSEKNPTELKEFLEQ >gi|307679287|gb|GL456440.1| GENE 90 90884 - 91567 651 227 aa, chain + ## HITS:1 COG:no KEGG:EF1164 NR:ns ## KEGG: EF1164 # Name: not_defined # Def: HD domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 227 1 227 227 417 98.0 1e-115 MKLFERIHQDTEIRQIYDAIGQMEDEEAGWAYHNWLHVTNVVAMTEMILKQLAVSEEYLE AAKIAALLHDVGALQGKAGHALRGKQFAEAYFRKQKICLPYQEEILSSIENHSNGFDSEE LMTLALIISDKLDITTSRVAKAGYFVPGMRQLQFLKKIEIMLSEQEVCVSFTAEEELDLE ELNAFYFMPKVFKAIAAFSEKIQRRPIVLLNNQEWPVPKPKNPSTVH >gi|307679287|gb|GL456440.1| GENE 91 91584 - 92078 717 164 aa, chain - ## HITS:1 COG:BS_yitK KEGG:ns NR:ns ## COG: BS_yitK COG1666 # Protein_GI_number: 16078166 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 3 164 2 163 163 171 58.0 4e-43 MAAKEASFDVVSEVNMEEVKNAIQIALKELKNRFDFKGSIADIKLENDKLVVVAEDDYKV EQVKDILFGKLVKRNVPIKNIHFSESEKALGGTARQYGDLISGIDKENAKKINTAIKNSG IKVKSQIQEDKIRVTGKSRDDLQKVMALLRELDLPMALEFNNYR >gi|307679287|gb|GL456440.1| GENE 92 92311 - 93267 999 318 aa, chain + ## HITS:1 COG:lin2365 KEGG:ns NR:ns ## COG: lin2365 COG1284 # Protein_GI_number: 16801428 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 12 293 9 290 300 249 46.0 4e-66 MSRLVSTYQRNESIKKIAVMAITALTSAVGLNFFLIPAKVFSAGMNGIAQIIATLLYTNL GIHINTGIFILFLNIPVFILGFVKLGKQSTILSFINVIGISVVTMFVPIVTVTTNPLMNA IMGGVLVGVGAGLSLKMGFNTGGMDIISLILSKTTGKTVGNFMFLLNGIIVLLAGFVFNW ESALYTIISIYCLSQVVDMIHTSHQKVTAMIVTTRPEAVALEVSQQIARGMTLLPSIGGY SGAEGRMIMMVITRYELYDLEQAVYSIDENAFVNILPTQSVLGRFANEDEQRIFHSTGTF PELQSYKVKRYPPKKKLK >gi|307679287|gb|GL456440.1| GENE 93 93470 - 94339 1401 289 aa, chain + ## HITS:1 COG:SP0605 KEGG:ns NR:ns ## COG: SP0605 COG0191 # Protein_GI_number: 15900513 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Streptococcus pneumoniae TIGR4 # 1 289 1 293 293 388 71.0 1e-108 MPVVSGAEFLKAARKGGYAVGGYNTNNLEWTQAILEAAEAKKAPVLIQTSMGAAKYMGGY KVAKDMITNLVDSMNITVPVAIHLDHGDYEAALECIEVGYTSIMFDGSHLPFEENLKLAK DVVEKAHAKGISVECEVGSIGGEEDGIIGTGELADIEECKQMVATGIDYLACGIGNIHGQ YPENWKGLAFDHLQAIAEAVGSDVPLVLHGGSGIPQEQIEKAISMGISKVNVNTEFQLSF AKATREYIEAGKDLEGKGFDPRKLLAPGKAAIIKDAEEHIDWFGSANKA >gi|307679287|gb|GL456440.1| GENE 94 94513 - 95805 1664 430 aa, chain + ## HITS:1 COG:L113067 KEGG:ns NR:ns ## COG: L113067 COG0766 # Protein_GI_number: 15672294 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Lactococcus lactis # 1 418 1 420 421 542 67.0 1e-154 MKKIVINGNRPLKGEVTISGAKNSVVALIPAAILADSPVTLDGVPDIQDVHSLIEILEIM GAKITFENNTLIIDPTEVVSVPMPKGKINSLRASYYFMGSLLGRFGEGVVGLPGGCYLGP RPIDLHIKGFEALGAHVTNEHGAMYLRTDEAGLQGTRIFMDMVSIGATINVMLAAVKAKG KTIIENAAREPEIIDIATLLNNMGAKVRGAGTDVIRIEGVEELHGCRHSIIPDRIEAGTY LAMAAAMGEGIKVRNVIYEHLESFIAKLQEIGVKMTIEEDMIEVHPSHDLKMTTVKTYPY PGFATDLQQPLTPLLLKAQGTGEIIDTIYAQRNKHIPELVRMGADASVEGNMIILNGPNQ LHGAEVVASDLRAGACLVTAGLMAEGTTTIYNVEYILRGYDHIIEKLTALGADIQMLETE EQEGPFEVDQ >gi|307679287|gb|GL456440.1| GENE 95 95820 - 97094 1192 424 aa, chain + ## HITS:1 COG:BH3781 KEGG:ns NR:ns ## COG: BH3781 COG1158 # Protein_GI_number: 15616343 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Bacillus halodurans # 1 419 5 423 423 609 71.0 1e-174 MAELENSTLKDIYAYAKEFKIPYYSQMNKKELSLAVIRAQAEKQGFFFMEGILDIVSQDG YGFLRPINYGPSAEDIYISSSQIRRFGLRNGDKVAGKARPPKESERYYGLMHVESVNGKD PEEAKERPHFPALTPLYPEKQLTLETTAGRLSTRMIDVFAPIGFGQRGLIVAPPKAGKTS VLKEIANGITENHPDVELILLLIDERPEEVTDLERSVKGDVVSSTFDQQPQNHTRVAELV LDRAMRLVEDKRDVVILMDSITRLARAYNLVVPPSGRTLSGGIDPAAFFKPKRFFGAARN IEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLSRELAERRIFPAIDIKKSSTR KEELLMTPEQLEETWKLRNNMSGDSLEYTDQFIKMLKRTQNNQQLFEVFHDVSFGKQIKR NPKR >gi|307679287|gb|GL456440.1| GENE 96 97164 - 97463 532 99 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227518426|ref|ZP_03948475.1| ribosomal protein L31 [Enterococcus faecalis TX0104] # 1 99 1 99 99 209 100 1e-52 MDQGKGAKKRMKQDIHPNYQPVVFMDSTTGFKFLSGSTKGSSETVEWEDGNTYPLLRVEV TSDSHPFYTGRQKFTQADGRVDRFNKKYGLKDENANPDA >gi|307679287|gb|GL456440.1| GENE 97 97733 - 97951 77 72 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIDNFLYKVLLSFRDIVVLIVQLNVHHFLGNSLCTQFLLFYACTVSILILLSTIVLALLY PFTNNSFLIKKI >gi|307679287|gb|GL456440.1| GENE 98 97855 - 98892 649 345 aa, chain + ## HITS:1 COG:lin1075 KEGG:ns NR:ns ## COG: lin1075 COG1887 # Protein_GI_number: 16800144 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Listeria innocua # 60 339 89 381 383 140 33.0 5e-33 MSFPRNDGHLIEQLEQQYHGMIIVLYTKNCQSYAASLNQKGIKTILFDKKTLLITTAISY LKSAPLIFVDNYFPELAILKKKQVVIQLWHANGALKQFGWGAYHTKHRSSKDQIRFQKVY DKMNYFIVNSLKMEAIFRNNYRLENAQFCHFGSPRLAYLEKLEVGETNQNNKVLYAPTYR EGMNEMMLVINQAIKAFSAMPNFHFYMKLHPSIQLDAIELPRNVSIWEKHIFESFSEIGY LITDYSSVVFEYMHVKEQPNILFFCPDLEKYALNPGIEPDFFEYLPGPLVENEKQLIVAL SNFSINSYKDNITRINEEWNQYQSKETINKIVELVERILGGFCEK >gi|307679287|gb|GL456440.1| GENE 99 98882 - 99628 492 248 aa, chain + ## HITS:1 COG:BS_tagA KEGG:ns NR:ns ## COG: BS_tagA COG1922 # Protein_GI_number: 16080628 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Teichoic acid biosynthesis proteins # Organism: Bacillus subtilis # 5 244 1 241 256 157 37.0 2e-38 MKSKVRTEYIGGLPVDVLTHQEIMDDLESYLKAKEKMIVTSVNPQISLLAFEHPEVKLYL KRATHRIADGIGVVKASKLMGGSIRERVTGIDVMDNFLEYANQHKERIFLYGAKQEVVEA AAKNIQRQYPGIVISGILHGYTKKKQQEIVEQINKAEPRFVFVALGSPKQEIFLEQTIDH LRANVFLDVGGTFDVLAGSVKRAPEFYINHNLEWLYRCLTMKRYDRLMQIPKYIYLTIKY RNNKSRGQ >gi|307679287|gb|GL456440.1| GENE 100 99629 - 100222 351 197 aa, chain + ## HITS:1 COG:no KEGG:EF1174 NR:ns ## KEGG: EF1174 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 197 1 197 197 308 98.0 7e-83 MIILFIWENDLDTTFYIVKIEKDEKFILRVPPIHKLSKFVQNNQWNSLIEELRKLSSYEV TEYIIIKKAMLFSYLFEDDKEIVISNQSERHLIDQNGKEWFLPKGKVAVNQEVLSEYLRF NHSDAERSFEHQEHIFRLTKIKLLKDKNPLKLQKQLKQLKKATTTSFSIKSLSKLLLIYT ATENKKIDRKTIKVNQE >gi|307679287|gb|GL456440.1| GENE 101 100275 - 100685 378 136 aa, chain + ## HITS:1 COG:BS_tagD KEGG:ns NR:ns ## COG: BS_tagD COG0615 # Protein_GI_number: 16080627 # Func_class: M Cell wall/membrane/envelope biogenesis; I Lipid transport and metabolism # Function: Cytidylyltransferase # Organism: Bacillus subtilis # 5 132 1 126 129 158 62.0 3e-39 MEVFMKKILTYGTFDLLHYGHINLLKKAKQQGDYLIVGLSTDAFNLEKKKQSYFSYEKRK QLLEAIRYVDLVIPETSWKQKVSDIAEFKIDTLVMGDDWQGAFDFLEVETTAKVLYLPRT PEVSTTQIKKELYYSE >gi|307679287|gb|GL456440.1| GENE 102 100824 - 101888 631 354 aa, chain + ## HITS:1 COG:no KEGG:EF1176 NR:ns ## KEGG: EF1176 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 354 1 354 354 636 98.0 0 MSRKKVGVFCLFLFFTFFIIVPKVEATEEMKTKFTVTPVLPENQVSGTSSYYDLILAPKQ SSTIVLDIKNKTDEKLSIVLTLANASTNDNGLIVYNDFDKPLDSSLKVPLTDLVTLENEE VSVPPHQTVSAKMKVKGLDQPIKGVVLGGVYAHLKDEKTEEENQTTGLTSRYGFNVAIAM RSAENAPLTEVNQLKLAKVTPTIALGSKSLKAVIQNPYAAIFPEVRLEGQVIKKGSSKKI AQRTLKNVRFAPNSSMNFHLDLGKQPLDAGTYIFTGRAILQQDEQQSWPFQQEFTINTRE AKKLNQEATVKWVLPTWWLPTFYTLLVITIGAICSVIWRNNYQKTSEKESENNG >gi|307679287|gb|GL456440.1| GENE 103 101881 - 102093 203 70 aa, chain + ## HITS:1 COG:no KEGG:EF1177 NR:ns ## KEGG: EF1177 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 70 1 70 70 89 97.0 4e-17 MASWFWLSGGLAVICFMFFLFSLLTSMSFIQHAKEPRSILKETLLSWLMLLLSGGWITIG LLLYFSLKNQ >gi|307679287|gb|GL456440.1| GENE 104 102320 - 103198 1151 292 aa, chain + ## HITS:1 COG:CAC1523 KEGG:ns NR:ns ## COG: CAC1523 COG1940 # Protein_GI_number: 15894801 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Clostridium acetobutylicum # 5 284 2 281 288 342 56.0 5e-94 MTEKLLGSIEAGGTKFVCGVGTDDLTIVERVSFPTTTPEETMKKVIEFFQQYPLKAIGIG SFGPIDIHVDSPTYGYITSTPKLAWRNFDLLGTMKQHFDVPMAWTTDVNAAAYGEYVAGN GQHTSSCVYYTIGTGVGAGAIQNGEFIEGFSHPEMGHALVRRHPEDTYAGNCPYHGDCLE GIAAGPAVEGRSGKKGHLLEEDHKTWELEAYYLAQAAYNTTLLLAPEVIILGGGVMKQRH LMPKVREKFAELVNGYVETPPLEKYLVTPLLEDNPGTIGCFALAKKALMAQN >gi|307679287|gb|GL456440.1| GENE 105 103289 - 103537 528 82 aa, chain + ## HITS:1 COG:no KEGG:EF1180 NR:ns ## KEGG: EF1180 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 82 1 82 82 88 100.0 8e-17 MADLKGRFDDAKDKVEGTAKEAQGKVTDDKGKELEGKAQSTFADVKDKARDAGDDLKEGA EKLTDKVKEGFEDLKDKFSKDK >gi|307679287|gb|GL456440.1| GENE 106 103595 - 104329 941 244 aa, chain - ## HITS:1 COG:lin0323 KEGG:ns NR:ns ## COG: lin0323 COG0778 # Protein_GI_number: 16799400 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Listeria innocua # 1 242 1 242 245 270 54.0 2e-72 MNQTIEQLLSHRSVRHFKKQALTDKQKQQLITAAQAGSSSNFLQAYTIIEIKDPELRREL GRLANCEDYVVNTGVFYVFVADLYRHATILSKEGQSLEPLKTPESLLVAAVDTTIAAQNM AIAAESMDLGICYIGGIRNDLDTVAQRLSLPELTVPLFGLTIGVPETLNGVKPRMPFENI LSENRYQPDKLTDMHAYDELLKDYYASRSSNAQTADWSQKSLSYFSYNRRPEVKIFLQKQ GFDV >gi|307679287|gb|GL456440.1| GENE 107 104413 - 104871 683 152 aa, chain - ## HITS:1 COG:SP0340 KEGG:ns NR:ns ## COG: SP0340 COG1854 # Protein_GI_number: 15900270 # Func_class: T Signal transduction mechanisms # Function: LuxS protein involved in autoinducer AI2 synthesis # Organism: Streptococcus pneumoniae TIGR4 # 4 150 7 157 160 177 55.0 4e-45 MARVESFELDHNTVKAPYVRLAGTEQNGDALVEKYDLRFLQPNKDALPTGALHTLEHLLA VNMRDELKGIIDISPMGCRTGFYMIMWDQHSPQEIRDALVNVLNKVINTEVVPAVSAKEC GNYKDHSLFAAKEYAKIVLDQGISLDPFERIL >gi|307679287|gb|GL456440.1| GENE 108 105078 - 106145 1198 355 aa, chain + ## HITS:1 COG:L66199 KEGG:ns NR:ns ## COG: L66199 COG0136 # Protein_GI_number: 15673604 # Func_class: E Amino acid transport and metabolism # Function: Aspartate-semialdehyde dehydrogenase # Organism: Lactococcus lactis # 4 350 3 348 358 469 67.0 1e-132 MGKEYHVAVVGATGAVGTRMIELLAETSLPIASVRLLASKRSAGQEIQFKGQPLIVEELV PESFEGIDLALFSAGGSISEKFAPEAVKRGAVVVDNTSHFRMAKDVPLVVPEVNSEALKN HQGIIANPNCSTIQMMVALEPIRQAFGLERIIVSTYQAVSGAGIRAINELKEQAEDFLEG KPVSEWSAEILPAGSDEKHYPIAFNALPQIDVFSEAGYTYEEWKMMNETKKIMGDNKLKV VATCVRIPVISGHSESVYIEVKQADASVSAIQELMAQAPGVILQDEPSEQLYPQALNSVN QKETFVGRIRQDVDVKNGFHLWIVSDNLLKGAAWNSVQIAETLHEMNLLRVPEND >gi|307679287|gb|GL456440.1| GENE 109 106179 - 107051 920 290 aa, chain + ## HITS:1 COG:L0093 KEGG:ns NR:ns ## COG: L0093 COG0329 # Protein_GI_number: 15673602 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Lactococcus lactis # 3 288 10 295 297 378 65.0 1e-105 MDLTNATIITAMVTPFQESGEIDFGKLPQLVDYLLANHTEGVILAGTTGESPTLTHEEEL QLFQRIIELIDGRIPIICGVGTNDTRDSVAFVKELATIAGIDAVLAVVPYYNKPNQEGMY QHFKTIAEASELPIILYNVPGRTAACLEVETTLRLAQLEKIVAIKECAGLDAITELIERA PKDFLVYTGEDGLAFATKALGGQGVISVASHVFGSSMYEMYQALEQGNLPEAAKIQRQLL PKMNALFSVPSPAPVKAALNHLGIPVGNLRLPLVACTPEEEQRIIRTLEI >gi|307679287|gb|GL456440.1| GENE 110 107082 - 108770 2036 562 aa, chain + ## HITS:1 COG:SP0613 KEGG:ns NR:ns ## COG: SP0613 COG0595 # Protein_GI_number: 15900521 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Streptococcus pneumoniae TIGR4 # 1 552 1 552 553 696 60.0 0 MSTIKIVPLGGVRENGKNMYVAEVEDEIFVLDCGLQYPENELLGIDVVIPDFTYLEENSE RIAGIFLTHGHADAIGALPYLLSKIQVPVFGTELTIELAKLSVNSHAETKKFKDFHVIDP HTEIDFGQATVSFFKTTHTIPDSIGVSIKTKEGNIVYTGDFKFDQSAIEMYQTDYGRLAE IGKEGVLALLSDSSNAENPVQVASEAQIADEVFDTIRYWEGRIIVACVASNLQRVQQVLN AADRSGRKVVLTGQDFERIIRTAMKLEKLQLPSEDLLVKPKEMKKYAPEQLLILETGRMG EPIKSLQKMANNTHGVVRIEEGDLVYITTTPTTAMETTVAKTEDIVYRAGATVKQISDNL RVSGHANPNDLQLMLNLMKPKYFVPVQGEYRQLAAHADLAHEIGMPYKDIFITGRGDILE YTKGRMSVAGSTTAENIMIDGIGVGDIGNIVLRDRRILSEDGIFVAVVTINRREKRIVSP AKITSRGFVYVKTSKDLMKESSNIVTEIVEKHLESDDFEWSKLKQEIRENLSRYLFEQTK RRPVILPVIMEATQRKRPKNNA >gi|307679287|gb|GL456440.1| GENE 111 108895 - 110277 1265 460 aa, chain + ## HITS:1 COG:lin2502 KEGG:ns NR:ns ## COG: lin2502 COG0737 # Protein_GI_number: 16801564 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Listeria innocua # 1 457 2 457 463 306 35.0 6e-83 MEEIVLFHTNDLHSHFENWPKIRRLVKAKRSLHQKEGKTVVTIDLGDFSDRCHPLTEATD GRANVAIMNTLAYDLVTIGNNEGIGNSKKQLEHLYDQATFEVVLANLEDPKTQTLPDFCQ AYKIMTTKEGTKLGFIGLTAPFPLTYNPNGWTIKQVEAVLPQLITEVAPQCDVLILLSHL GIDTDFMIAANYPEIQVILGSHTHHVFKDGEKINHVQLAAAGKYGQYIGEVHLFVDADTK QVTSYAKTIETASLEEQATDAKEIAGYLTEGHRLLQAQQIAQIPETLSTDLRQPHAFITV ALKALKEAGQTEAAVLNNGLFLADLPEGIINADQLHEALPHPMHLIKVTLKGSDMSRLIR EMEKSRQFLRKFPIRGMGFRGKIFGELCYDGIRFERNSQTVFWQGKPIQPEQKYTLTTVD HFQFVPFFPTIELVGEVEFLFPDVLRTVVSNYLHAHYPIK >gi|307679287|gb|GL456440.1| GENE 112 110312 - 110941 834 209 aa, chain + ## HITS:1 COG:lin2501 KEGG:ns NR:ns ## COG: lin2501 COG4470 # Protein_GI_number: 16801563 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 51 137 3 89 91 127 65.0 1e-29 MTDKKTTEKKETETAATFTEELTAVLEEIKEEPVKEKKKGEIVTIVNETDIQIGEREYRI VKNHRDAFDPERLGERFSEVLARYDYIVGDWGYEQLRLRGFFDTSNRRAAPDQRIDTLED YLYEYCNFGCAYFVIERTGERKEKTTHRRRRHKKNNRSNAFVEEKSAPTNKNSKPVIRTR KEENKKTTTPKQPSPKKSGKGFTIRQREE >gi|307679287|gb|GL456440.1| GENE 113 110947 - 111717 1041 256 aa, chain + ## HITS:1 COG:SP1407 KEGG:ns NR:ns ## COG: SP1407 COG0647 # Protein_GI_number: 15901261 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar phosphatases of the HAD superfamily # Organism: Streptococcus pneumoniae TIGR4 # 5 256 3 254 257 317 64.0 1e-86 MKKDYQGYLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLAN EFDIHVPASLVYTATLATIDYMKETNRGKKVFVIGEAGLIDLILEAGFEWDETNPDYVVV GLDTELSYEKVVLATLAIQKGALFIGTNPDKNIPTERGLLPGAGSVVTFVETATQTKPVY IGKPKAIIMERAIAHLGVEKEQVIMVGDNYETDIQSGIQNGIDSLLVTSGFTPKSAVPTL PTPPTYVVDSLDEWTF >gi|307679287|gb|GL456440.1| GENE 114 111720 - 112358 399 212 aa, chain + ## HITS:1 COG:SPy1044 KEGG:ns NR:ns ## COG: SPy1044 COG4478 # Protein_GI_number: 15675040 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 10 196 3 192 210 100 36.0 1e-21 MMRSKLRLRETLGLICLFLTIVALSITITINFRPLYLFDIQHLNILKDVEVDRVTLIKNY DHLMMYLNNPFEKTLVFPDFPMSDSAAFHFYEVKKLFLLCYGVLLVTLLPSVLYLKYLVK NQRLWTLIRPFQWGMFLPVLFGFFMLIGFDQFFIAFHGLFFNNDAWLFNPLTDPIINALP EAYFMHCFILFFVLLEGLFLIGILIGKRSLKK >gi|307679287|gb|GL456440.1| GENE 115 112485 - 113054 731 189 aa, chain + ## HITS:1 COG:no KEGG:EF1190 NR:ns ## KEGG: EF1190 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 189 1 189 189 328 99.0 5e-89 MDEIEKSLQNWGQQLENVHLPRWHELPDIELYMDQVITLIEKYLSPLITLEKHTLLTSSM VNNYVKHGLIPAPVKKRYNQKHLAFLIAITLLKQVLTLPEIKQGILFQGATVGIREAYNL FCQEQERAIYVIAAQAQEKEVQAKSQEPMGIEYLAVKAATMSFATKMFSEKVIELEQEYL KEMDEMIHE >gi|307679287|gb|GL456440.1| GENE 116 113047 - 113907 1097 286 aa, chain + ## HITS:1 COG:CAC1624 KEGG:ns NR:ns ## COG: CAC1624 COG1307 # Protein_GI_number: 15894902 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 4 281 2 277 280 214 41.0 2e-55 MNKEKIALLVDSGTDVPEALVKQYGMYVLPLQIIYPEKTYTDKVDITPEEVYQRLEKEIP STSLPDGATIQAIFDKIKEAGYEKVLAVTISSGLSGTYNVVRLLGEQTEGLDVFVLDTKN IGIGAGIQAIRAAELIETGLGWQELQQKLTEEVANAKVFFNVATLEYLQKGGRIGLVTSI LGNALKLNPIISCNEEGIYYTVAKSRGRKKSLDKTFELVTNFIGEAPRFRLAVAHGAAEE EAKAMMERLKAAFPQAEEIYFGTISPALVVHTGPGLLGVGIQLLND >gi|307679287|gb|GL456440.1| GENE 117 114061 - 114726 906 221 aa, chain + ## HITS:1 COG:SP1778 KEGG:ns NR:ns ## COG: SP1778 COG0580 # Protein_GI_number: 15901607 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Streptococcus pneumoniae TIGR4 # 1 221 1 222 222 195 58.0 6e-50 MKKAIAECLGTFILVFFGTGTAVLGNGMEGIGTTGIALAFGLTIVATAYSIGTISGAHLN PAVSIGMWLNKRMTTMELIYYVVGQIVGGLIASFALLSILKGAGKSIENLGQNGVGELSV AGALTVEIILTFIFVLVVMTVTSAKKGNASLAGIVIGLTLTMIHLVGIPLTGTSVNPARS IAPAVFAGGSALSELWIFIVAPLIGGLLAALVAKFVLDTEE >gi|307679287|gb|GL456440.1| GENE 118 114900 - 115604 1071 234 aa, chain + ## HITS:1 COG:lin0315 KEGG:ns NR:ns ## COG: lin0315 COG0745 # Protein_GI_number: 16799392 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 2 234 4 237 237 357 81.0 1e-98 MKKILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDG LEVAREVRKTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGA TNAKEAEVTTQSELTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREH LLQTVWGYDYFGDVRTVDVTVRRLREKIEDSPSHPTYLVTRRGVGYYLRNPEQE >gi|307679287|gb|GL456440.1| GENE 119 115611 - 117440 2013 609 aa, chain + ## HITS:1 COG:lin0316 KEGG:ns NR:ns ## COG: lin0316 COG5002 # Protein_GI_number: 16799393 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 4 609 3 610 610 526 46.0 1e-149 MKKKVHFFQSVNFKIALSFILLLLIAIQIIGGYFIRELEATTISDFKKNMDSQVVQLSNT LSTQMSNKDLERSDVDANLKKALSDFSNADISEARIVDDKGIIRATNDLNQQNIIGKKND YRDLNDFTSKKYQALDNDKRVYVNVQPIQSPTGETVIGVLYVKSNLENKYQEITNTASIF FTASIIAAAISIIVTLLIARSITKPIGEMREQAIRIARGDYAGKVEVHGKDELGQLAETF NQLSERIEEAQETMEAERNRLDSVLTHMTDGVIATDRRGKVITINEMALSLLNVKNENVI GTSLLELLDIEEDYTLRKLLEEPDELLIDRSTSDREEDQMIIRVDFTMIRRESGFITGLV CVLHDVTEQEKNERERREFVSNVSHELRTPLTSMRSYIEALSEGAWENPEIAPNFLKVTL EETDRMIRMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRRE FTKRDLWVELDTDKVIQVLDNILNNAIKYSPDGGVITCRLVETHNNVVFSISDQGLGIPK KDLGKVFERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLPY EPYEEDWWE >gi|307679287|gb|GL456440.1| GENE 120 117440 - 118747 1088 435 aa, chain + ## HITS:1 COG:lin0317 KEGG:ns NR:ns ## COG: lin0317 COG4863 # Protein_GI_number: 16799394 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 12 420 12 429 440 63 21.0 1e-09 MKLSEWITRIGLILMVILSIYFSVNIWLNSAKKIPEMKSGSQVTTAVNEKAIGDVYLPLQ LIRIADGKAMQSNRETLISNVQNDIKMATFGKLTQVVTKNAEQLKRYNQMEQGIELLYQG PFLISDYASIYNLSINFTNFNELTDQYFTKIQLDFNENKIRFLDYDQANVYEAPMTVNKA RLMGIINKEGLQYQDVSENTLTKQGQCYLTNDMKLKKYSYILASQPVTRFRNAFFNETED IQTNEDSQDLTYTSKEERLFAEEKLGKIDFKGTLPEENKRDSIYNQSFSYVKRLGTNMGN LRYFDRTKDSVNYRTFVEGFPVFSNDLKGQVDIRITNNDGAAPSVTINTSVNTIQVPIPS EEEVTLESTEKLIKRLEAAGAKKEKIQSAVIGYTWQTIEEVKQVVDLSPEWYVLYNNNWY TATDLVKQLPSLEVG >gi|307679287|gb|GL456440.1| GENE 121 118747 - 119601 708 284 aa, chain + ## HITS:1 COG:no KEGG:EF1196 NR:ns ## KEGG: EF1196 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 284 1 284 284 523 99.0 1e-147 MDFKRIEWIFFLAFLGLNIFLFGIYREGQQEESNVSSSSQTESIESRLEKDNISYKGTLS SERLEGYYLSGEQTNFSAALKIQREKNKNFLRNGLQIADNTLTSVPSKNYFIDPKKIDKD LSTFLNEKNALLFGDEYQYLPEFSHLKEPTAEIVATQSYKGIPFRDDTAKLSILADTSGE LWKISKYSQTHIENIEELRDKTDLYSNRDAIDTLYMNNRIPSNSKITFIKLAYSRIYKIR EKNVYVPVWFVGISTGEDSVEIEQVNAVSNTIITNNTVPKVEKH >gi|307679287|gb|GL456440.1| GENE 122 119658 - 120464 896 268 aa, chain + ## HITS:1 COG:SP1225 KEGG:ns NR:ns ## COG: SP1225 COG1235 # Protein_GI_number: 15901087 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Streptococcus pneumoniae TIGR4 # 3 268 2 269 269 377 69.0 1e-104 MDSEFAFNISVLASGSTGNSLFIETNQKKVLVDAGLSGKKITSLLAEVNRKPEDLDAILV THEHRDHIHGVGVLARKYKLDVYANEKTWQAMDPMIGKVDVAQKHIFEMGKVLTLGDMDI ESFGVSHDAIAPQFYRFHRNNRSFVVLTDTGYCSDHIRGTIENADAYLVESNHEIEILRA GPYPWSLKQRILGDKGHLSNDDGALVMADVLGDKTKRIYLGHLSKENNTKLHARMAMEST LKQKDLGVGEAFKVYDTDPDSASELFQI >gi|307679287|gb|GL456440.1| GENE 123 120675 - 121589 848 304 aa, chain + ## HITS:1 COG:SPy0576 KEGG:ns NR:ns ## COG: SPy0576 COG0701 # Protein_GI_number: 15674665 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Streptococcus pyogenes M1 GAS # 1 304 3 297 300 290 53.0 4e-78 MFQFLPNSVLQMSTIFLSIIIEALPFVMLGCLISGALHVFLTPERVKKVLPKNKFLSICV GSFLGFFFPSCECGIVPIVHQFVKKDVPTHTAFAFMLTAPIINPIVLFSTYVAFSGATKF VIWRVLGSMIVAWVIGIWLAYFRKESILTEKELAQIKEEQVAHTHEHVDEARSFWKNGWS ALTHSIDEFFDTGRYLIFGSLLAAIMQTYIPTGALMQLGHSKILAILVMLVIAATLSLCS EADAFIGSSLLSLFGTGPIVAFLVFGPMVDIKNLLMMKRYFKMSFIVQFVLIVALVVTIY AAVV >gi|307679287|gb|GL456440.1| GENE 124 121608 - 122474 856 288 aa, chain + ## HITS:1 COG:lin0922 KEGG:ns NR:ns ## COG: lin0922 COG3689 # Protein_GI_number: 16799993 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 1 288 1 279 279 267 48.0 1e-71 MIRFIILIGYMGLMMYLQISGELNQYINIHYNYLAVLSMVLAFIMAIVQLILWNQADPSM QKKHEDMHQHGGHEHHGHQHNLEKPSQRGLAYLLLSLPLIVGLLFPTVSLDTTIVEAKGF NFPVSKESVGDPDMQTQYLKPDTSMYFNKTDYDKQMAKAMKQYDGQSVISITDENYLEIM ELIYNYPSQFAGKRISYKGFVYNSKREESVDQFVFRFGIIHCVADSGVFGLLVHFPEHTQ FQNNDWVTITGTVELSYYPPFKRQIPTVQVEKVKADQAPKNQYVYRSF >gi|307679287|gb|GL456440.1| GENE 125 122526 - 123017 499 163 aa, chain - ## HITS:1 COG:lin0586 KEGG:ns NR:ns ## COG: lin0586 COG3610 # Protein_GI_number: 16799661 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 5 151 7 152 152 157 55.0 7e-39 MLGIVLVQFIFSFLASAAFAIIINVPRRSLVACGLTGSVSWMLYWVIVEVFSGNAALGSL IGAVGVAAVSYLFSKILKMPVTIFNIPGIVPLVPGGLAYQAVRNIVIGNYEKGAYFTVQA VMIAGAIALGLVASEVFNQNIRSFREKRESLGFIRRKRNKIKK >gi|307679287|gb|GL456440.1| GENE 126 123032 - 123784 658 250 aa, chain - ## HITS:1 COG:lin0587 KEGG:ns NR:ns ## COG: lin0587 COG2966 # Protein_GI_number: 16799662 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 249 1 249 250 241 52.0 9e-64 MTPAHLDLLLETCLLAGKIMIESDAEMYRVEDTMSRIALASGNYRMVSYVTQTGLFVGID GTSTIRMVQVMKRGIDLEKISRVNQLSRAYVSGDFSLEELLNKLKVIDSEHRHFPISARI VSAAVVSATIMILFGGVWSDLFLTFLIGGCGYSLYYFSLKFLKIKFLSEFLASLFIGAAA ILSVKLGLGQSQDLIIIGCVMPLVPGVQITNALRDLLAGHYLSGVSRGTEALMTSGMIGF GIAFVFQLFY >gi|307679287|gb|GL456440.1| GENE 127 124220 - 124489 487 89 aa, chain + ## HITS:1 COG:SPy2114 KEGG:ns NR:ns ## COG: SPy2114 COG4472 # Protein_GI_number: 15675864 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 89 1 89 89 128 73.0 2e-30 MGFTDETVRFDFDDNRKKAISETLETVYRALEEKGYNPINQIVGYLLSGDPAYIPRYQDA RNLIRRHERDEIMEELTKYYLANHGIDIK >gi|307679287|gb|GL456440.1| GENE 128 124486 - 124908 463 140 aa, chain + ## HITS:1 COG:SPy2113 KEGG:ns NR:ns ## COG: SPy2113 COG0816 # Protein_GI_number: 15675863 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) # Organism: Streptococcus pyogenes M1 GAS # 1 136 1 136 139 196 72.0 8e-51 MRIMGLDVGSRTVGVAVSDLLGWTAQGIEIIRINEEEENFGFERLGELVKEYEVTKFVVG LPKNMNNSIGPRAEASMAYGDKIQELFQLPVDYQDERLTTVQAERFLVEQADASRAKRKK VIDKLAAVMILQNYLDAHSR >gi|307679287|gb|GL456440.1| GENE 129 124946 - 125251 532 101 aa, chain + ## HITS:1 COG:SPy2112 KEGG:ns NR:ns ## COG: SPy2112 COG3906 # Protein_GI_number: 15675862 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 4 98 3 100 101 96 71.0 1e-20 MTEHNHDHDHEGHEHITLVDEQGNETLYEILLTVDGQEEFGKNYVLLYPAGIPEDEDVEL QAYSYVENAEGTEGDLQQIETDAEWDMIEEVFNTFMAEEEE >gi|307679287|gb|GL456440.1| GENE 130 125590 - 125652 229 20 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFDLLALLTGISVRGNAPHQ >gi|307679287|gb|GL456440.1| GENE 131 125752 - 126600 952 282 aa, chain + ## HITS:1 COG:no KEGG:MPTP_1291 NR:ns ## KEGG: MPTP_1291 # Name: not_defined # Def: Cro/CI family transcriptional regulator # Organism: M.plutonius # Pathway: not_defined # 1 281 1 281 281 426 81.0 1e-118 MRVAGEKIKTARKKKKLSQAELAKGICTQATISNIENKNVCDSLDIFSSVCLRLDLQVEE CIEGSSEKKLESLLNKVEELCFYFKHDEAYDLLKDYPDDIESSNRILETKFFYYKGITSL LGKKNNSEALFYLHRGSEISRDINIYNILSMNAIGILYELEDDIEKAKVYYDKSLQLLSE FKLDYPLEQCRIYYNTAKFYSLIKDYAKSIELSDKGIEINRTHSSIYSLDCLLYEKAFNK QMLGLDAVEDYRIAYYFTRFFENKKLLAYIEKDMQEFNISFK >gi|307679287|gb|GL456440.1| GENE 132 126674 - 127843 1437 389 aa, chain - ## HITS:1 COG:SPy1110 KEGG:ns NR:ns ## COG: SPy1110 COG0281 # Protein_GI_number: 15675092 # Func_class: C Energy production and conversion # Function: Malic enzyme # Organism: Streptococcus pyogenes M1 GAS # 8 385 7 385 388 548 75.0 1e-155 MSTKDVKELAIEQAKKFGGKLEVCPKVPIETKGDLGIAYTPGVAAVSSAIHEKKERAYEL TTKKNTVAVISDGSAVLGLGNIGPEAAMPVMEGKAALFKRFAGVDSIPLVLDTQDTEEII QTVKFLAPTFGGINLEDISAPRCFEIEQRLIDELDIPVFHDDQHGTAIVVLAALYNSLKL INKKIEDIHVVINGGGSAGLSITRKFLAAGVKHIIIVDRTGILSETDTGLPPHHAEIAKL TNREHRTGDLATALEGADVFVGVSAPGVLKPEWIQQMNEQPVIFAMANPVPEIFPDEALA AGAYIVGTGRSDFPNQINNVLAFPGIFRGALDARAKKITIEMQIAAAKGIAKLIPDNELT PTNIIPDPFQEGVAKVVAESVHNAVKETN >gi|307679287|gb|GL456440.1| GENE 133 127875 - 129200 1457 441 aa, chain - ## HITS:1 COG:SPy1109 KEGG:ns NR:ns ## COG: SPy1109 COG3493 # Protein_GI_number: 15675091 # Func_class: C Energy production and conversion # Function: Na+/citrate symporter # Organism: Streptococcus pyogenes M1 GAS # 15 441 20 442 443 616 79.0 1e-176 MEKKLHATAANETDWRNKLTKTRIGSVTLPVYLVTASIILVTALLEQLPVNMLGGFAVIL TMGWLLGTIGGNIPILKHFGGPAILSLLVPSIMVFFNLLNQNVLDSTDILMKQANFLYFY IACLVCGSILGMNRKILVQGLMRMIVPMALGMILAMGVGTLVGTLLGLGWKHSLFYIVTP VLAGGIGEGILPLSLGYSAITGLPSEQLVGQLIPATIIGNFFAIMCSGLLSRLGEKRPEL SGQGQLIKITNSDDLSDALEEDKAPIDVKLMGAGVLIACTLFITGGLLQHLTGFPGPVLM IVVAAFLKYLNVVPKETQRGSKQLYKFISGNFTFPLMVGLGMLYIPLKDVVGMLSWQYFV VVISVVFTVIATGFFVSRFMNMNPVEAAIVSACQSGMGGTGDVAILSTANRMNLMPFAQV ATRLGGAITVITMTAIFRMLF >gi|307679287|gb|GL456440.1| GENE 134 129348 - 130898 1700 516 aa, chain + ## HITS:1 COG:SPy1107 KEGG:ns NR:ns ## COG: SPy1107 COG3290 # Protein_GI_number: 15675090 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase regulating citrate/malate metabolism # Organism: Streptococcus pyogenes M1 GAS # 1 509 1 507 513 328 36.0 1e-89 MKRGGKLWCFLSVIFIATLIIMITFFYGVTTVQTIKEVRKNQEQALLAVGEQLAIEPNVI EALKNDHYSDELEAYTVRLGEIHQLDFIVIMNMQGIRLTHPDRQKIGKHFEGGDEVRALK GEEHLSVSQGSLGESLRGFVPVYDQGKQIGVVAMGIKMTSLSQLIERTKNDYTVSVLLSV GFGFILAIVVSYYLKKQLHDLEPREIARLLEERNAMLEETKDAILVIDTDQNILLANIEA TKMYHNITNSEENLLGKKLSALVLSPEKLVVHSKTEQFYRQNGQDYFVSIAPINVRKRTI GHVIFLKNATETFIVAEQLVSTTTYASALQSQSHEFMNKMHVIYGLVDLEDYEALKHYLA DLLKPEKEFAQRLAILVRNPILAGFLSGERIKFAEIKTQLAIEIYPEIPPNKRDEDTQNL IAIYRYIHRFLMEQTLPEEIIETIDYQPGSLTTTYSFAYPKEQLERFEQEFFTSYLARLL ENAEATLTWENQQNNWLVIRINVHYEGAEENEPIDY >gi|307679287|gb|GL456440.1| GENE 135 130879 - 131571 470 230 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149011191|ref|ZP_01832496.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP19-BS75] # 1 229 1 223 226 185 44 2e-45 MNLLIIEDDPMVAYIHQKYLEKLIHQPTIFTAATIAEGLQLTKEKQPALVLLDVHLKDGN GLTYLATIRDEKIDTEVILITAANELENVKRSLHLGVLDYLVKPFSFERFQQSIENYQKK TAQFTLETKELSQTKVDQLFHSSQTNARKNEQDLQNMSLEKGLTQATLQLLLKKIDEFTD YFTIQELSEASQLSHVSVRKYVLFLEKNNLLESKNSYLKVGRPYQSYRRI >gi|307679287|gb|GL456440.1| GENE 136 131756 - 133099 1877 447 aa, chain + ## HITS:1 COG:pli0044 KEGG:ns NR:ns ## COG: pli0044 COG0446 # Protein_GI_number: 18450326 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Listeria innocua # 1 445 1 445 454 363 45.0 1e-100 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSCGMQLYLEGKVKDVNSVRY MTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDI PGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDI LDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVV AVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALAT NARKQGRFAVKNLEEPVKPFPGVQGSSGLAVFDYKFASTGINEVMAQKLGKETKAVTVVE DYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYA DFFFQPAFDKPWNIINTAALEAVKQER >gi|307679287|gb|GL456440.1| GENE 137 133152 - 134063 1042 303 aa, chain - ## HITS:1 COG:BS_lytR KEGG:ns NR:ns ## COG: BS_lytR COG1316 # Protein_GI_number: 16080618 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 22 300 24 304 306 245 42.0 6e-65 MSKGKKIFAIIFGIILVLFLAVVGMGAKLYWDVSKSMDKTYETVERSKKSQVNLNNKEPF SVLLLGIDTGDDGRVEQGRSDTTIVATVNPRDKQTTLVSLARDTYVDFPGQGKQDKLNHA YAFGGASLAMDTVENYLNIPINHYVSINMAGLKELVNAVGGIEVNNNLTFSQDGYDFTIG KISLDGEQALSYSRMRYEDPNGDYGRQERQRKVIEGIVQKVLSLNSVGNYQQILTAVSDN MKTDLSFDDMKKIALDYRSAFGKVKQDQLQGTGFMQDGVSYQRVDEQELTRVQQELKNQL NTK >gi|307679287|gb|GL456440.1| GENE 138 134341 - 135993 2038 550 aa, chain + ## HITS:1 COG:SA2008 KEGG:ns NR:ns ## COG: SA2008 COG0028 # Protein_GI_number: 15927787 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Staphylococcus aureus N315 # 5 547 8 551 554 695 64.0 0 MSKKGSDIIVESLINHEVPYIFGIPGAKIDGVFDALVDKGPELILARHEQNAAFMAQGIG RLTGEPGLVIATSGPGASNLATGLVTATAEGDPVLALAGQVKRSDLSKLTHQSMNNAALF SPITKFSTEIQDPETLSENIANAYRIAKTAKKGATFLSIPQDVTDSPVTGEAIKPLSAPK LGHASAETIAALAERIKQAKLPVLLLGMRASARKVTAAIRELVAITGLPVVETFQGAGII SKELEEHFFGRVGLFRNQPGDRLLKRSDLVIAIGYDPIEYEARNWNAEKDARVIVIDEVQ MEIDQYMQPEEELIGDMSKNILKLSEAFSEPILTEDAQDYLETLQEKLTIKEVKTSTIEN RLHPLEIVQTLQEKTTNEMTVTVDVGSHYIWMARHFRSYEPRHLLFSNGMQTLGVALPWA ISAALVRPNTQIISVSGDGGFLFSAQELETAVRLKQNIVHIIWNDGSYDMVKFQEEMKYN RSSGVDFGPVDFVKYAEAFGAKGVRVHSQTEFAAALEEGMQTEGPVIIDVPVDYSDNQEL GKTLLPDQLY >gi|307679287|gb|GL456440.1| GENE 139 136005 - 136709 838 234 aa, chain + ## HITS:1 COG:SA2007 KEGG:ns NR:ns ## COG: SA2007 COG3527 # Protein_GI_number: 15927786 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Alpha-acetolactate decarboxylase # Organism: Staphylococcus aureus N315 # 6 234 5 234 234 233 51.0 2e-61 MSEQYVYQHGTLGGLMESLMAGTAEIGTLLTQGDFGIGTLEGSNGEIILLDGTLYHANQT GEITILEGEELTPYAAVTRFQEDGAFPVSTETDENIKAQILEKISPNFFAAIKISGLFAK MHVRVAPKQEKPYPPFVEAARNQPEFTAENIQGTVVGFFTPKLFHGASAAGFHLHFISED HQFGGHILDFGIKQGTVSWMETAELRQHFPVHDADYRNKEIDIAKALSAIEEAE >gi|307679287|gb|GL456440.1| GENE 140 136867 - 137949 840 360 aa, chain + ## HITS:1 COG:no KEGG:EF1215 NR:ns ## KEGG: EF1215 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 360 1 360 360 655 98.0 0 MDTLYRSWQLSGWLYHDIFVIIVAIIFIVISGILVISLIRRRSTRRLVPYALILLVYLAV VHFAGLIFFGMFRSVTIEEKSATFYSEKTKGLTSIERMIIPNGRTNGISTSNSLFQVISV NSQTGERMWSKRLGWRDYLIGQTDQYVVLNNADNESIYLLDTKTGKKEFSEADLVKKFPE LKDYLSSNFVDYRFMDNRYLYIYGLNNRYYQLDLKNWQLKQNPTFKEVFQTQEAPKWTVD SNESQIGQELSSEERTTVQGKLEEQLIAPVLLGKKDEANYYVLSYKKRQSNQAIVGLYNW QKKTYEWQTPLLLTKENVPIEAFQVEDALFIKVPRYLYKINLNNGNQEYQFDYRWGQVIR >gi|307679287|gb|GL456440.1| GENE 141 137967 - 138029 72 20 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLRQIEGANSPYDIKKRLEE >gi|307679287|gb|GL456440.1| GENE 142 138063 - 138782 746 239 aa, chain - ## HITS:1 COG:no KEGG:EF1216 NR:ns ## KEGG: EF1216 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 238 1 238 239 457 97.0 1e-127 MNKKNLLTYQSMAALLLVFSLFSFAPSVSFATRSGKTPVSVELEIGGLPGDESVDDAIYP DLENPNTSFDLLFIPKEFTFETQAISGDLTAVPIRPSEGNTHTMRHFGMGDVRGALTGWH VTAEIPHMRNEAHSLLGIITFQLTGGYARYDKTLRRFFMTNTMYGLDFSEDPAAPDFPTN PIIIGNGATLMSNAGDRKGQGMWSGRMTDISLAIQTPVSQLFPGAYTGSIIWNLISGPA >gi|307679287|gb|GL456440.1| GENE 143 139031 - 139435 452 134 aa, chain + ## HITS:1 COG:no KEGG:EF1217 NR:ns ## KEGG: EF1217 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 134 1 134 134 233 97.0 2e-60 MSKCLGLLMILFVLSGCSGSRNSQQEVVIEKSANNDKARQFVDQKNPHLGTQLEAESYTK QEAIEFLQNGLGIPTNDSAFHYTFKQSNKGSYVVQIISEKNSVSKENELFGYYQVYQDGI IVKMMEKDQTFQEN >gi|307679287|gb|GL456440.1| GENE 144 139643 - 140479 952 278 aa, chain + ## HITS:1 COG:AGl889 KEGG:ns NR:ns ## COG: AGl889 COG1176 # Protein_GI_number: 15890561 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 21 257 74 310 326 175 39.0 9e-44 MNKKVPYLIVAPGLVLLLFFLMIPLITSILPTIFTDHGLTLNQYVTFFKDDYNVSIFWRT IRVSLIVTGISIVLGIPTAYFIAGVSKKWRGFLMAMTLFPLLTNSVIRSFAWINILGKNG VVNTLLLKTGLIEQPLNLLYTEFAIIIGSVYLFLPTMIMTLVGVMENIEGEMLEAAETLG ANPMTAFRKIVLPLSIPGTIVGSILVFTGTLTAYTTPQLLGGNQKMMMSTFLYQKANTLG DWQSASVLAFIMILTTLIVMKGLDMVAKKVDRREANHA >gi|307679287|gb|GL456440.1| GENE 145 140472 - 141251 815 259 aa, chain + ## HITS:1 COG:SMb21275 KEGG:ns NR:ns ## COG: SMb21275 COG1177 # Protein_GI_number: 16264527 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Sinorhizobium meliloti # 10 256 10 256 259 189 44.0 6e-48 MRKQKGLSVIAILVFLFLFLPLCLIVVTSFGTAAAIQFPIKGFTLDWYAKALQSETFMDS FKLSLLIGVLATVLALIVGIPASYALARYSVRGRNFIKSFFLSPTVIPGIVVGYTLFQYI VIKLGLPVFQGLLMGHFLISLPYIIRVVGSSMEQLDYSMEEVAWTLGCTRLRAFIQIVLP NVSSGIFAAFMLAFVNSFNNVPVSMFLSGPGVTMLPTSLLSYMEYNYDPTVSAISVLLML LTMGLMFLIEKTLGLASIA >gi|307679287|gb|GL456440.1| GENE 146 141290 - 142330 1228 346 aa, chain + ## HITS:1 COG:SMb21276 KEGG:ns NR:ns ## COG: SMb21276 COG3842 # Protein_GI_number: 16264528 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Sinorhizobium meliloti # 3 346 6 340 342 300 46.0 3e-81 MTFVDLKDIRVSYDGKQDILKDLNISMEKGELVSLLGPSGCGKTTTLRVIAGLIKPNDGQ FFVDQEELTKVPVHKRNFGMVFQSYALFPHLTIAENVAFGLKLRKESKQTMDQKVTEMLK VCGLESLGDRYPKQLSGGQRQRVALARALIIEPKLLLLDEPLSNLDAKLRVAMRIEIKRI QQQLGITTVFVTHDQEECFSISDKVAIMNNGVIEQYDSPETIYRLPRTKFVAEFIGFENF FSVEKMEAGHYRTQTNQIVKTTNPEPNVTTTVATIRPEDIEIVSEAATNTVAGTVAVRTF LGKSYQYEVETALGTLLVNGTSEQLYETNETIHLAFPAEKLVILEK >gi|307679287|gb|GL456440.1| GENE 147 142357 - 143421 1416 354 aa, chain + ## HITS:1 COG:AGl890 KEGG:ns NR:ns ## COG: AGl890 COG0687 # Protein_GI_number: 15890562 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 10 354 6 340 340 143 29.0 7e-34 MKKRVILGTLVAATLLMTACGNSEATTKSESKGGSNALVVSTFGLSEDIVKKDIIAPFEK ENEAKVTLEVGNSADRFTKLKNNPNAGIDVIELAQANAAQGGKEGLFEKITEKEVPNLSQ LTPGAKEVFESGAGVPIAVNSIGIVYNKEKLGKEIKNWDDLWSADLKGKISVPDVATTAG PLMLYVASEHAGQDITKDNGKAAFEAMKELKPNVVKTYSKSSDLANMFQSGEIEAAVVAD FAVDIIQGAAENVTYVVPESGTYANYNTVNIPKKAQNKETAFKFVNARISEESQKAKAIS LNEGPTNQQVTLSEKEAKNKTYGAIAERAKTVDFNFINSQLADWIDQWNRTMNQ >gi|307679287|gb|GL456440.1| GENE 148 143442 - 145181 1647 579 aa, chain + ## HITS:1 COG:CAC0887 KEGG:ns NR:ns ## COG: CAC0887 COG1001 # Protein_GI_number: 15894174 # Func_class: F Nucleotide transport and metabolism # Function: Adenine deaminase # Organism: Clostridium acetobutylicum # 5 562 19 569 570 270 31.0 4e-72 MNVDVLLKNVWLYQTVTQTFVQRNVAIKNDKFYYIYEEENVNLQPKKTINAENQWMIPGL IDAHMHIESSMTTPTIFSKAVVRYGVTTVIADAHEMANVFGLEGLKAFMAAETELDIFHA IPSSVPSTTPELETTGGIIGLAEVAELLKEPKVICLGEAMNFKGISYEPDSLIRQIIDLC QKQRPTMPLEGHCPKIEDQELADFLYSGITSDHTHQFPKTLKEKIEAGVFIQFQNKSITP ENIQVIVDNDFYNYASIITDDVMADDLLKGHLNENVKKAVHAGLPIEKAIYMATYTPAKR MGLHDRGEIAPGKKADFLLLNDLESFDITTVYKSGKVVFEKGEPFHYPEKIEEFPATYQQ TIQCKKLTEEDLLLKVATTKETVRCNVIQKQEIGTFTERITKEIPVENGLLQWQKANCAL LIVMERYGKNGNISFSLMDQPLSEKGAIATTWAHDHHNLMVMGNTIEDILLAQNELLAMQ GGYLVASDQQVMATCPLPIGGILSQAPIEQLGASLQKVRQAMQALGYQNMNEIMSFSTLS LPVSPAIKVTDFGMMDTKSQRFYPLVFPEDGVLLHENTH >gi|307679287|gb|GL456440.1| GENE 149 145165 - 146493 1331 442 aa, chain + ## HITS:1 COG:MA1276 KEGG:ns NR:ns ## COG: MA1276 COG0402 # Protein_GI_number: 20090140 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Methanosarcina acetivorans str.C2A # 4 436 15 440 442 254 35.0 2e-67 MKTLIKNVHILTMDEQFSEIKAGYLVIEEDTIVELAPMTTLDEKRMAANQVIDGQNGILM PGMINTHTHVGMIPFRSLGDDVPDRLRRFLFPLEQFMTKELVGCSSDYAIAEMLLSGITS FCDMYYFEDEIAKSCEKMSVRALLGETIIDMPTCDSPEPSGGLFYAETFIRKWQGHPLIT PMLAPHAPNTNSPEVLAKIIELSRRYQVPVTMHVAEMTYEMAEFEKAYQKTPIAFLEELG YLSEPFILAHCILATDEDLASLAATNGKARVAHCIGANTKSAKGVAPIKQMLDQGIIVGL GTDGPSSGNTLDLFTQMRMVANFHKTAHQDRSLFTAKEIVYLATMGGAKTLGLAEQVGSL EVGKKADITLIETQSVNMFPIFDAYSALVYSANASNVEAVWVNGQQLVANKELQQANLKE IKEKLYQAMNTFVKEAKKRAAL >gi|307679287|gb|GL456440.1| GENE 150 146699 - 147568 959 289 aa, chain + ## HITS:1 COG:no KEGG:EF1224 NR:ns ## KEGG: EF1224 # Name: not_defined # Def: Cro/CI family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 289 6 294 294 535 99.0 1e-150 MNIQRFIEKRKARGLSQSELAKGICTQVTVSRFEKNGQVPTLKILIQLCNRLELPLGELF PRVGIKQPEILEKMEEAEFFLITSEHDQLQTILKNIPFDEIKDSQLLLEYYYLQGFVMIF QNASLMDCLFTFEKLLFEEQKYTSDIYRLLAFTGIGMAYAKEGEIEKAEFYFNKVFKEIY LYTIQSMEDTWRVLNVVFHCGVFYAEKGDLETSDALLEYAISICSDNHVTYYLARAAFQL AKNALAEEKPQEQILELLQDARAYAKINKNRILLEAIQTLKETILSKNN >gi|307679287|gb|GL456440.1| GENE 151 147789 - 148724 918 311 aa, chain + ## HITS:1 COG:SPy1138 KEGG:ns NR:ns ## COG: SPy1138 COG1477 # Protein_GI_number: 15675115 # Func_class: H Coenzyme transport and metabolism # Function: Membrane-associated lipoprotein involved in thiamine biosynthesis # Organism: Streptococcus pyogenes M1 GAS # 1 302 1 303 312 302 51.0 6e-82 MQQSQTIYLMGTVIDVFVDHEESEKILEEVHQRLITYEQRFSANDSTSELMAVNQQAGQK PVSVHPELYQLIALGKKHSCDPASHLNVTIGPLVQTWRIGFKDARVPSEEEIKACLKKIN PEKIHLNPLKQTVFLEEEGMKLDLGALAKGYIADLLIAYLKEVHVTSALINLGGNIVTLG PSTHQNKKWRIGIRNPQKSRETISLLVEVANQSVVTSGIYERSLTEAGRVYHHLLDPTTG YPLETEMASITIISDASVDGEIWTTRLFGYPIPEALEILNQLDGIEGVIITQDQQILYSS GLADTLHIIHS >gi|307679287|gb|GL456440.1| GENE 152 148751 - 149359 731 202 aa, chain + ## HITS:1 COG:SP1471 KEGG:ns NR:ns ## COG: SP1471 COG0431 # Protein_GI_number: 15901321 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Streptococcus pneumoniae TIGR4 # 1 202 1 201 201 247 60.0 1e-65 MKKIIGLVGTNSEQSTNRQLLQFMQHYFAQEADIELVEIVDFPMFNKPEDKVLPEIVKTV AEKIEAADGVIISTPEYDHAVPASLMNALSWLSYGIFPFVDKPVMITGASYGTLGSSRAQ AHLRQILDAPELKARIMPSSEFLLAHSLQAFDENNALKDSEQIDKLAGLFADFCVFIEIT EQLKHAHAQNKKEAENFSWETI >gi|307679287|gb|GL456440.1| GENE 153 149378 - 150634 1389 418 aa, chain + ## HITS:1 COG:SP1472_1 KEGG:ns NR:ns ## COG: SP1472_1 COG0431 # Protein_GI_number: 15901322 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Streptococcus pneumoniae TIGR4 # 1 187 1 187 187 258 65.0 2e-68 MKLIGIVGSNADSSYNRLLLQYIGKEFYKMFDLEILEIKDIPMFNQSKDQTNSVLIQNMN RKILQADGVIIATPEHNHTIPAGLKSVLEWLSFKIHPLENKPVMIVGCSYYDQGTSRAQL HLRQILDAPGVNAIVMPGNEFLLGKAKEAFDENGNLIAEGTRQFLESTLQKFVEFIDVIS KLEGAKPKDLPEDLHAKGTIETTIEGVDMAADDWVEQAAEAVQAVEGDTYVKLDRGILTV DQLNYFLKSMPMELTYADSNNQFLYYNKKMAAEEMFAKRQPGQVGNPLANCHPPKALKNV EWVIQQLRSGKTDAIRVHVPMHGPDTYVVHNYQAMYDDNGNYAGINEYILDFKPIVDWYL KQTGQELVGGKNVDAVSGASKKEAPETADSVSSASVHEEESATEKPTVDSVSSASIKE >gi|307679287|gb|GL456440.1| GENE 154 151046 - 152536 748 496 aa, chain + ## HITS:1 COG:no KEGG:EF1228 NR:ns ## KEGG: EF1228 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 496 1 496 496 939 99.0 0 MTTLLDELLDQEFRDKLLIYQTFMNSEGPLLKEEFYGYFDLSTQKLESLCRQINYECTQI SSRSQILFPAKGLISAQKLSQIDYQALRKYYFDQSLMAKLLLDVGLYQKHTIQEFSQIHF MSKSKIYAFSYKLNLILANWRIKLKSTGLVGEEKNIRSFCFQCLYYFYGSNQERLPNILL ENSPGIKRFINDLQLMYQRTFSLNQSAQLFILLTIQRFRVFSDHVVDSFTEVHVPSCLQH AFEKIYTSETPLFKEDFGKETSYIFLFLSLNEYIDSPIVFPDKLTMLDEFIDHMNSVIPF FEKRITVETKEKLKLICYRWDRLYFSVAAFIPAKQSSFFEERFPQIHRALDGFIQKTESL HQKRFLMYERVHLYYDFMFCLLNDRSFCAIEKTIHVFVDFSGGEDYNRFIAKIIASFNYM DVMIDHKLTLETDLYLSDFYSSKVRCRQLTWRHLPETKDWQVFAEVVRELRKGETQKNEH YERDPIEMWREQEYEG >gi|307679287|gb|GL456440.1| GENE 155 152478 - 153161 384 227 aa, chain + ## HITS:1 COG:no KEGG:EF1229 NR:ns ## KEGG: EF1229 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 226 1 226 227 408 99.0 1e-112 MSTMRETQSRCGENKNTKDSQLRQAVNYKDLTGQKFGELTVVAPTAKRKEGLIVWACRCS CGSYAEASRRQLIRGYRTKCAHHRYQTMLKKNYHELVVVRIESIQQTMKAYCLCSCGQSC WVRCENLLNGHTKSCGHRKKKDYRQRVAGVIPGKLQSKRPKNNSSGHKGVSQTASGKWLA YISLKGKRHNLGIFTKKSEAILARKLAERRLFQPILQQEIVTTNKEV >gi|307679287|gb|GL456440.1| GENE 156 153182 - 153277 184 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLAGLFSVTGMILLGILFCLIGYQTFRKHHH >gi|307679287|gb|GL456440.1| GENE 157 153485 - 154309 974 274 aa, chain + ## HITS:1 COG:L42411 KEGG:ns NR:ns ## COG: L42411 COG1408 # Protein_GI_number: 15673582 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Lactococcus lactis # 2 271 3 277 278 240 44.0 2e-63 MVKKIGLSIMLLFFFLIIALPIYAWKIEPNLVHVNQVTLGKKNQREPLNVVQLSDIQVSE FYETKRLDKVIKKVNREKPDIIVFTGDLFDNYAKNPQQKEPMIEKLKQLQATIGKYAVWG NHDYGGGASAVYDEVMEASGFTVMKNQGETVTLADGRRLFIGGLDDSLLGNPSVSETLSY RETYDYALLMTHEPDVADAFVGTGTQLVLAGHSHGGQIWIPFYPITNVLAEKYTRGLYQL DQETQLYVNTGLGTTAIHARFGVIPEITHFTIYI >gi|307679287|gb|GL456440.1| GENE 158 154601 - 154828 195 75 aa, chain + ## HITS:1 COG:BH0484 KEGG:ns NR:ns ## COG: BH0484 COG4209 # Protein_GI_number: 15613047 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type polysaccharide transport system, permease component # Organism: Bacillus halodurans # 2 68 27 94 325 57 38.0 6e-09 MKKLKKFYDQRQLHWMVLPGVAFMIVFNYIPIYGIIIAFKNYTIVDTVSSAPWVGLENFR IIMEDSFFGKQFVIP >gi|307679287|gb|GL456440.1| GENE 159 154840 - 155511 685 223 aa, chain + ## HITS:1 COG:BH1911 KEGG:ns NR:ns ## COG: BH1911 COG4209 # Protein_GI_number: 15614474 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type polysaccharide transport system, permease component # Organism: Bacillus halodurans # 1 217 98 315 319 169 40.0 3e-42 MKLFLGFAIPIILAVMIFEMRDGHLKKVIQTISYIPHFFSWIVLGGMLISWLSTNGFINQ VMMSLGLMNQGVNHLLDPDKYWWIAVLSDLWKEVGWGTILYLAGMSRIDPTFYEAARIDG ASKLTQIRAITLPLLAPIISLNLILNVSGLLGSNLDQTLVLMNAQNQNKSEVINSFVYRM GLTQGDFSYATAVGLGISVISIVLLVITDRITRKMNNGRSVIL >gi|307679287|gb|GL456440.1| GENE 160 155526 - 156407 688 293 aa, chain + ## HITS:1 COG:BS_lplC KEGG:ns NR:ns ## COG: BS_lplC COG0395 # Protein_GI_number: 16077779 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Bacillus subtilis # 6 292 10 294 295 220 41.0 3e-57 MIKRKSKENKWFYFFNTLILVLFSLLIIVPIWNILVSSVSSSSGLAGKGLVLWPKGFTLE NYRKVFSDSSIPRAFLISVLKTVIGASTHTLFCAIVAYGLSKSRLVGRNIYTTMGVITMY FGGGMIPTYLLIKSLGLLDTFWVYIIPALFSYYDVVILMNFFREIPPSLEESAKIDGASE FQIFYKIFLPLTKPALATIILFNGVGQWNDFMTTKLYITKEYLYPLQMKIYEIIVQSNLS TMTESGSTDMVVQATTRGVQLATIVITTIPILIIYPLLQKHFIGGMMAGAVKE >gi|307679287|gb|GL456440.1| GENE 161 156425 - 158023 2002 532 aa, chain + ## HITS:1 COG:BH1913 KEGG:ns NR:ns ## COG: BH1913 COG1653 # Protein_GI_number: 15614476 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus halodurans # 90 420 76 411 551 96 25.0 1e-19 MKKVLGGLLVATAVVSLAACSGGEKKASSDVSIKDRYELDEKTPAWKLDKKKEPTKIKWY INSDWTALPFGKDVTTAQIKKDLNVDIEFISGDDSKLNAMISSGDMPDIVTLTEKTGQAA LKADSWAYSLNDLAKKYDPYLMKVVNQDTFKWYALEDGKTYGYPNYSNTKADYESGNIPV NDNFVIREDVYNALGKPDVSTPENFEKVMQQIKEKYPEMTPMGFTTVGDGAGPFLDKLQD FLGVPLEDKNGKYYDRNLDKEYLEWLKTFNDVYRAGNISDDSFTDDGATFDEKVKQGNYA TMLVAGTSGQGGNFTEFMKKSGTRYIAIDGPSSTSGRKPTLNQTGISGWLSNYITKDAKD PAKVTQLFTYLIDEPGQILTKYGVEGVTYAYNDQGKIDYLPEVKKLEQTDNDAYNKKYGI SRFLYFNNDRVNKLKVPMESALTQMQEWGKGKLVPHFVIENINPDAGTPEARANEAIETK LNTTVISMIRAKDDKAFDKSLEDYKAFLKSNKWDAIEKIKSEKMAENRDKLK >gi|307679287|gb|GL456440.1| GENE 162 158080 - 158673 333 197 aa, chain + ## HITS:1 COG:no KEGG:EF1235 NR:ns ## KEGG: EF1235 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 197 1 197 197 252 99.0 5e-66 MNKLFAYEGWYYRIFSFIANLIIINFLFLITCITGIFSGVGLIALYRTIYRLYREKDIPV LRTFWTALKNNIMRGFILTGVLFVAFLLGGIVVTSLFKIATSLGFLAIFLLSFVALFLTS FLFLFSVFNWSVKKTLGETVYVVLSNSANAIILFILPLLTFVFFYKLNLFLYIALGFGTT AFLQVAFFQKVLGVEHE >gi|307679287|gb|GL456440.1| GENE 163 158666 - 159583 744 305 aa, chain + ## HITS:1 COG:TM0077 KEGG:ns NR:ns ## COG: TM0077 COG3458 # Protein_GI_number: 15642852 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acetyl esterase (deacetylase) # Organism: Thermotoga maritima # 3 297 23 324 325 163 33.0 5e-40 MNEYFEFWQKTKEELQKIPLDIHRRVIDYPLENVQVEQVDFLSFLGERIFGYLLLPKTAG KQPIVIDCLGYMNHIQEPWQFAHWTQIGCACFVIDNRGQGGLTKDRVPYQTIWHEAPMGR GFLDKEDWYQRRLFADHLRSVEVVRTFTEINQDQIILRGGSQGGGVVLMVNSLVDFPILA TFADVPSHSCLENRVAEGTGSYQIIHQYLQEHPQAHEKIAAVLPYFDSRHFVSQIKNPVF ASVGSHDPICPIKDFFPSYHQIKARKAVRVYWKKGHGGGETTQIRREMRQIQQLLQEVKN ENSYV >gi|307679287|gb|GL456440.1| GENE 164 159564 - 160328 633 254 aa, chain + ## HITS:1 COG:lin0348 KEGG:ns NR:ns ## COG: lin0348 COG3568 # Protein_GI_number: 16799425 # Func_class: R General function prediction only # Function: Metal-dependent hydrolase # Organism: Listeria innocua # 3 247 4 252 257 168 35.0 8e-42 MKIATYNVRVDTEYDQDWQWSFRKEAVCQLINFHDWSLCCIQEVRPNQVRDLKAYTTFTC LSAEREGDGQGEGLAILYNEQKVQAIDTGYFWLSETPQQPSIHPEAGCPRIALWGLFKET TQNTPFLVINVHLDHISAHARLAGMTVILEELHDKIAQYPTLLMGDFNAESGEAVHQLVQ KKFQDSKNLATHYGPRGTFQNFTYTKPWAELEEIDYIYVKGWQVQQTASLTDSIDGRFPS DHFPLEAEVCIEER >gi|307679287|gb|GL456440.1| GENE 165 160333 - 162483 2532 716 aa, chain + ## HITS:1 COG:lin1840 KEGG:ns NR:ns ## COG: lin1840 COG1472 # Protein_GI_number: 16800907 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase-related glycosidases # Organism: Listeria innocua # 1 712 1 717 723 635 48.0 0 MKENQLIQLVEEMTIDEKINQLLQLAAAFYSDKAEEKTGPMSELGLSQETIDTAGTTLGV SGANEAKRVQKEYMQNHRLNIPTLLMADIIHGFRTIFPIPLALGSTWDEAAVEKMAEISA KEAAVSGLHVTFSPMVDLVRDPRWGRVMESTGEDPLLNSRLAAAMVRGYQGENLREDNWR VAACVKHFAAYGGALAGRDYNTVDMSERQLREMYLPGYKAGLDAGAKLVMTSFNTVDGIP ATGNQWLFRDVLRNEFGFEGVVISDWGAIKELIPHGVAKDEKQAAELAIKAGVDIEMMTT CYPDYLKELLEEGRIAETLIDEAVMRILKLKNELGLFENPYRGADEQAEAEVILSKEHRE IAKKIAQKSMVLLKNENILPFTPQEKIALVGPGAQSQDILGAWSWQGKKEEAISLVAGAQ KLTTNLLVAQEPFDYFEPTAAAIEEALTLASQADKVVVALGETDWMSGEAASRSDIRLPE KQLAVVAQIIEKNPNVVVTVYSGRPLDLQEIDVAKGIVQAWQPGTEGGNALAEILWGEYN PSGRLSMSFPETVGQVPIFYNVDNTGRPYESAPEEKYVSKYLDVSNYAKYPFGFGLSYSH FSYQPIQLSALTFTKEQPVTVSVLVRNDSPIAGEETVQFYVRDLVGQVVRPIKELKDFQK VWLEPKEEKEVQFLLSEDMVRYVHSDNQVTSDAGEFIVMIGGNSRDVQTATVTLNE >gi|307679287|gb|GL456440.1| GENE 166 162501 - 165776 3058 1091 aa, chain + ## HITS:1 COG:lin1839 KEGG:ns NR:ns ## COG: lin1839 COG3459 # Protein_GI_number: 16800906 # Func_class: G Carbohydrate transport and metabolism # Function: Cellobiose phosphorylase # Organism: Listeria innocua # 3 1086 4 1078 1086 861 43.0 0 MQIKKLKQADTVATFLETGDLKELNSCGMMINQLEGNPLDGSMNQLYLRIITGDTINYRP MIGSNSQSDFYLSDNQLTWRGEFEAVRYQVDFRLGPSNQWFWRVNVTGTGLVDIVYGQDI GLATKGAVQSNEAYVSQYLDHHIWQEGEELVVLSRQNQPQNEKFPALIQGSFQKLAGYST DGYQFFGRSFKQTNTPEALGKRYLANEVYQYEFAYTALQTEAVQLTNESKEFVFYGAVTE THPQALAEPFLSKEALQVIYETVTFDSLEGTQDYPPKLLGEPITGNPLTEEELTALYPLQ TQIEKVAGQTYSFFTENYHHVVLQEKEIAMERAHGHILLSGKGLTVDEPLLSTTVYMYGI FNSQVVLGNTTMNKLMSNSRNALNVMKRSGQRIYILENGLWRLLTMPSAFEMGLNSATWY YKLPKDTIRVRTFTSPDSRVIQLEVTSQKDAYMWAVSNHLLLGPEEVPTYQLEQTGKTLR VTGNHSATENYYPELTYALTVDKSFQVTDSTLFGGAEADLLVLAIEKTQKFSLLITGSTE DQALVNTPLDFEKAESQYLAFINGLSHHFELTHTDSSVQQMNQLTRWYTHNMLVHYLSPH GLEQYGGAAWGTRDVSQGPTEFFFATQQPKIVASIIQHLFENQFEDDGNWPQWFMFDRYE EQKASESHGDIIVWPLKVVTDYLEQTADYSILATEIPYTSRKDNHKTKETASLFEHLKKE INYIEQHFLPETFLSCYGDGDWDDTLQPYDNRLKEQMASSWTVALTYQVLKKFAALITEI DATYSQHLAILVAGIKNDFQKYMLADETIPGFIYMETPETFEQMIHPNDQKTGIQYRLLP MTRSMLAELLTPEQVSHHLEIIEKELTFPDGVRLMNKPANYRGGVSTNFKRAEQAANFGR EIGLQYVHAHIRYTEAMAKIGQRDKTWQALMQINPVQLKEGVHNAELRQANAYFSSSDGD FKTRYESQENFGKLKDGSIGVKGGWRIYSSGPGIYLNQLITAVLGIRQKAQSVVFDPMLP EKLSGLTLTYQLFDKPVTYKFYPNQSAKIVIDGQEVPFKFEENPYREGGMEVQKDEVLSL LNEASVIEIYH >gi|307679287|gb|GL456440.1| GENE 167 165792 - 166757 1057 321 aa, chain + ## HITS:1 COG:lin1838 KEGG:ns NR:ns ## COG: lin1838 COG1609 # Protein_GI_number: 16800905 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 317 1 317 321 364 59.0 1e-100 MVGIKDIAKKAGVSISTVSYALNGSSKVTEETRTRIQAIAEELNYVPNMAARTLKRRQTN IIGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSGKKSHLFIPEKMVDGAIILDWTFP TKEIEKFAERGHSIVVLDRTTEHRNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEK GYDSQERLAVSTRELTRFGIPYEIIQGDFTEPSGYAAAKKILSQPQTEPVDVFAFNDEMA IGVYKYVAETNYQMGKDIRIIGFDNSELGAFVQPRLATIAYSKHRWGMVAAEKIIHLMRG EAAESEHIYTRFIEGESFPSE >gi|307679287|gb|GL456440.1| GENE 168 166790 - 167320 611 176 aa, chain - ## HITS:1 COG:no KEGG:EF1241 NR:ns ## KEGG: EF1241 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 12 176 12 176 176 317 100.0 1e-85 MSLLVLSTLLSACSTVSGSPASQSAPAPDEVLATSIGTYENRTLLVPDGRLALTALHKGK DYQGKPMFYVLFELTNTTEKTQNIQLMIQSFMEVSQTVHGKAQNLQYAVLTDSPFQDKLD RLADEINPGETIQGAYPYEFINENKPVHFKFRDRLLSLDEPIASEEITITEKSLVR >gi|307679287|gb|GL456440.1| GENE 169 167591 - 168304 875 237 aa, chain - ## HITS:1 COG:lin0390 KEGG:ns NR:ns ## COG: lin0390 COG2188 # Protein_GI_number: 16799467 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 234 1 235 237 167 39.0 2e-41 MRTNTRYKEIYAAIKQDIEAGVYPINQKLPQGRLLAEKYQVSELTITKALHLLVQEGYVV RRRGSGSFVQDFQNRTITKFSPLTGTYSTYDGKVESVVLGFATEVPEPWVTEKLSITEEE LVYKIIRLRIIEDVPSIIEYTWMPVALIPNLTMKELKVSIYQYISEQLHQKIQSARVSIS GIRPSALEKKYLNLTDNDFLMRAEQIAYLGNGHIFEYSIANHIPSEFTFETVLIAEK >gi|307679287|gb|GL456440.1| GENE 170 168547 - 169980 1724 477 aa, chain + ## HITS:1 COG:L179659 KEGG:ns NR:ns ## COG: L179659 COG2723 # Protein_GI_number: 15672157 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Lactococcus lactis # 1 475 1 475 478 740 74.0 0 MEHHQLKAFPQDFLWGSASAAYQVEGAWNEDGKGASVWDEFVRLPGKTFKETTGDLAVDH YHRFKEDVALMKQQGLKAYRFSIAWTRILPEGRGQVNQAGLKFYSDLIDELLAAGIEPMV TLYHWDLPAVLQKEYGGWESRKIIADFVAYAKILFDAFRGKVRYWISLNEQNVFTSLGYQ LAVHPPGVTDNKRMYEANHIANLANAAVINAFHELEMPGKIGPSFAYTPVYAVDAHPANV LAAENAEDLLSHFWLDVYLWGEYPIAALNYLQEQGVAPTIKEGDLALLRSAKPDFLGINY YRTDTVAANPLDGVGIGKMNTTGEKGSETESGVPGLFKKVNNPYVERTNWDWAIDPQGLR IALRRLASRYQVPILITENGLGEYDTLTEDKQIHDTYRIDYLRSHIQAIQEAITDGVSVI GYCTWSYTDLLSWLNGYQKRYGFVYVDQDETQKGSLERIPKDSYYWYQKVIETNGLI >gi|307679287|gb|GL456440.1| GENE 171 170005 - 171054 1285 349 aa, chain + ## HITS:1 COG:ECs4289 KEGG:ns NR:ns ## COG: ECs4289 COG0673 # Protein_GI_number: 15833543 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Escherichia coli O157:H7 # 1 348 1 345 345 355 51.0 6e-98 MTVKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFTTDLNEL LTDPEIELITICTPAHTHYDLAKQAILAGKSVIVEKPFCDTLEHAEELFALGQEKGVVVM PYQNRRFDGDYLAMKQVVEQGFLGEINEVETHIDYYRPGSITEQGPKENGSFYGLGIHLM DRMIALFGRPDHVTYDIRNNEVSEAVDNYFDVDLHYGSKLKVKVKTNHSVASPYPRFIVH GSNGSFIKYGEDQQENDLKAGIMPDAPGFGEDSPMYYGEVTYRNGNGDWIKKQIKTPVGD YGRYYDAVYETLKNGAPQLVTEEQALTNIEILEAGFLNPSPSVYRLKEN >gi|307679287|gb|GL456440.1| GENE 172 171528 - 171986 540 152 aa, chain + ## HITS:1 COG:lin1603 KEGG:ns NR:ns ## COG: lin1603 COG2707 # Protein_GI_number: 16800671 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 2 142 4 144 153 114 56.0 1e-25 MESWLFLLLIALIAFVAKNQSLLIASVVVLALKALPNSAKIMSWLSDKGINLGVTIISIT ILVPIATGQIGLKDLIQSFKTPMGWLGIFCGILVAVLSSKGVGLINQSPEITVALVFGTI LGVVFLKGIAAGPIIASGMMYVIITTFQAFQH >gi|307679287|gb|GL456440.1| GENE 173 172025 - 172366 405 113 aa, chain - ## HITS:1 COG:no KEGG:EF1247 NR:ns ## KEGG: EF1247 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 113 1 113 113 221 100.0 6e-57 MSLTISEEVKQRLAPFLTETNTFLLVANDGSNPYSSAEGCCMIGDRFIIVPVDQAEAPYT ETIANDSFHVYTSTYDQMFLTGHLQLVIHPNAGTITLKNESGILDSNVDIYQH >gi|307679287|gb|GL456440.1| GENE 174 172440 - 172703 402 87 aa, chain - ## HITS:1 COG:no KEGG:EF1248 NR:ns ## KEGG: EF1248 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 87 1 87 87 111 100.0 1e-23 MVFLHIIFGMFAFIGALGLGVAFRDSFTELSTPKKAAIILSYVGAIGSTVLGFTSATKNP FVLAATVVLVVAFSIALFKKSSKETSK >gi|307679287|gb|GL456440.1| GENE 175 172859 - 174571 1812 570 aa, chain - ## HITS:1 COG:SP0966 KEGG:ns NR:ns ## COG: SP0966 COG1293 # Protein_GI_number: 15900843 # Func_class: K Transcription # Function: Predicted RNA-binding protein homologous to eukaryotic snRNP # Organism: Streptococcus pneumoniae TIGR4 # 1 565 1 551 551 508 50.0 1e-143 MSFDGVFTHSMVHELTETLVSGRISKIHQPYENEVVLVIRAKGKNHKLLLSAHPSYARIQ LSTITYSNPETPPNFVMMLRKFLDGAILETIQQIENDRVIHFTFSKRDELGDLQNIVLIV ELMGRHSTIVLVNQSSGKILDAIKHIGMSQNSYRSLLPGATYIEPPKPMGLNPLTASKEE VFALLSTAPELNGRYLQQHFQGLGKDTADELSARLLAQPNEKMAIWTEFWSSVTEAVVPT LTVTEKKEYFTPIPYQSLVGEQTTYPTLSELLDAFYSGKAEKDRVKQQGGELIRKIENEL KRNQKKLKKLQQTLADTENAENYRRDGELLTTFMAQVPKGATEVELPNYYEENAPLRISL SPALSPNQNAQKYFQKYQKLKNAVRVVKTQIQQTQQEISYLESVVAQLEIATPMDIEVIR EELIEQGYLKRKKNKKQKQPKKSQPDLFYATDSTPILVGKNNLQNDQLTLRTAKKTDYWL HAKDIPGSHVIIRDAHPSEETLTEAALLAAYFSKYRLSSQVPVDYVQVKHVHKPNGAKPG YVIYENQRTLYVTPTEESIKKIQQNKASAS >gi|307679287|gb|GL456440.1| GENE 176 174779 - 175450 634 223 aa, chain + ## HITS:1 COG:no KEGG:EF1250 NR:ns ## KEGG: EF1250 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 223 1 223 223 329 99.0 6e-89 MNNFMEELKEALYELRQRKLLMITAIVALVLIIGSIIFIPTMQKNIRAAQVESLVAGPIK SEKVSVLDYKTADKKIQETGAMSVMFAKPSGKQYDQMVKLFNSDKMNEFHRSLYIYPLIY NAGKAQEQYNVSGDEITLIFFENGKEKTRTVVEKSMDLKTQLIPELNRLPMAGVLKDQQK AAQEAEKEAAKTAETQTTTSTTGVAQSTETTIESTDTVPETGE >gi|307679287|gb|GL456440.1| GENE 177 175514 - 175621 169 35 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MALVISMTILVSLWLIQSQKQAVKVPVKIERNRNN >gi|307679287|gb|GL456440.1| GENE 178 176498 - 177487 1193 329 aa, chain + ## HITS:1 COG:SP1069 KEGG:ns NR:ns ## COG: SP1069 COG2984 # Protein_GI_number: 15900938 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 1 325 11 339 344 293 52.0 4e-79 MKNKRLTVVVSLLAIYLIGAFFVNQKETNSKKETVTVGVLQFVSHPALDEIYKGVEEGLK ENGYDKGKNLEIIFQNGQADQSKLAIMSQQLVQKKADVLIGIATPAAQALANTTQEIPII LGAITDPVSAGLVKDNQKPGGNITGVSDQSPLSAQMDLLKELIPAAKKIGILYASSEENS RYQVAEAQKAAEAKGLTVKTYAVLSSNEIAQTVQVMTKETDVIYIPTDNTIANAMQTVVG EANRTKTPIIPSVDTMVEQGGLATVGINQHALGVQAGKMAAEVLSGKSQPATTPIYTFNT GDTIINEKQAQKLGITIPAELAKKSKLIN >gi|307679287|gb|GL456440.1| GENE 179 177512 - 178399 1131 295 aa, chain + ## HITS:1 COG:SP1070 KEGG:ns NR:ns ## COG: SP1070 COG4120 # Protein_GI_number: 15900939 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 283 1 280 288 294 62.0 1e-79 MIVSAIGQGMLWALLGLGIFMTYRILNFPDMTTEGSFPLGGAVCVTAITTGVSPFVATLL GVGAGMLAGLVTGLLFTKGKIPIILAGILVMSGLNSVILFVMKSPNKSLLNQPKIQDVFQ KMALPDYYDTIFLGISVLAVVMILLLFFFNTSLGQAYIATGDNEEMARSIGIQTDRMKIL GLVLSNGLIGLSGALIAQNDGYADVSKGTGVIVIGLASLIIGEVLFGELTFGERLMAIVV GSIIYQLLILLVIKLGFDTTYLKIFSAVILAICLMIPQLKKALRLHGFSDKGETK >gi|307679287|gb|GL456440.1| GENE 180 178396 - 179163 209 255 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 25 238 38 248 329 85 29 4e-15 MKPVVELKNATKIIDNGMNEKKVILDHVNLAIYPGDFITVLGGNGAGKSTLFNSLAGTLT LTEGQFLIEGVNRTNLSEVKRAKSLARVFQDPKMGTAPRMTVAENLLLAMKRGQKRPLTL RKINEQRALFTKICQEVGNGLENHLDTPTGNLSGGQRQALSLLMATITKPELLLLDEHTA ALDPKTSKQLMHLTEQRIEEGNLTCLMITHRMEDALRYGNRLIVLQKGKIVQDLNAAEKA QLTLQDLLLFFEEVE >gi|307679287|gb|GL456440.1| GENE 181 179195 - 179656 516 153 aa, chain - ## HITS:1 COG:lin0586 KEGG:ns NR:ns ## COG: lin0586 COG3610 # Protein_GI_number: 16799661 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 3 142 7 145 152 121 45.0 4e-28 MELIFHLLFSFLATVTFGIITNIPRKALVACGITGMTGWMIYYVLTQTFDASQTFANFLG TVGLGIASIFFSRYKKMPMIIFYIPSLVPLVPGGPAYQAVRSILLGNIDDGLQLILKVVF TAAAIAAGFMVTSLLERIVKRFFPKRLFRLVKK >gi|307679287|gb|GL456440.1| GENE 182 179668 - 180444 692 258 aa, chain - ## HITS:1 COG:lin0587 KEGG:ns NR:ns ## COG: lin0587 COG2966 # Protein_GI_number: 16799662 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 10 258 2 250 250 234 48.0 1e-61 MKGAIPLVNSEKRKQLIIDTCILAGKIMLESGSEVYRTEDTITRIATNAGEPESVCYTTA TGIFVGFRSSNYTQLENIPQRSINLEKVSLVNQLSREFAQKEITLPELYQRLTLLETDTP TFSISLRLLAAGIVSCTLMYIFGGTWQDFIATFFVGVIGYASYLFTQKLFQVPYLDSFAA AFVIGLLAYLAVHFHLAVNIDNIIIGAVMPLVPGVAITNSFRDILAGHLISGTARGTEAI FIAGSVGLGIALIFKLFM >gi|307679287|gb|GL456440.1| GENE 183 180676 - 180882 223 68 aa, chain + ## HITS:1 COG:no KEGG:EF1258 NR:ns ## KEGG: EF1258 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 68 1 68 68 111 100.0 8e-24 MDNQWLLYGISSVVLIILIRRTILSGNIVLSCLLGAILLIQVVGVALCAQQKKKNEHTKE LPSSKVHQ >gi|307679287|gb|GL456440.1| GENE 184 180900 - 181679 986 259 aa, chain - ## HITS:1 COG:lin2311 KEGG:ns NR:ns ## COG: lin2311 COG0561 # Protein_GI_number: 16801375 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 3 259 2 256 256 239 46.0 3e-63 MDKMKAITFFDLDGTLLDGKSQITPKITAAVAALKDNQILPLIATGRTLCEIQPIMKASG IDSAIVMNGQFIHYEGKTIYSDEFTTEECVSLHEHVKQRGHELAFYNERRIFCTGHTGTV KQAYDYIHSAVPEIDPTGYENDAVNMMLVLSQHGDDDEYYYERFPELTFYRNGPFSIDIV RKGVSKGSGVKNLFNTLGLNGIPTYAFGDGINDLALFEACDYGIAMGNAREELKEKATFI STKNTENGIVNGLKKFDLL >gi|307679287|gb|GL456440.1| GENE 185 181894 - 182613 836 239 aa, chain + ## HITS:1 COG:BS_yclJ KEGG:ns NR:ns ## COG: BS_yclJ COG0745 # Protein_GI_number: 16077443 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus subtilis # 1 235 1 226 227 266 60.0 2e-71 MNILMIEDNESVSEMMQMFFLNEGWEATFKDDGKEGLTTFLASSEKWDMITLDLNLPSMD GMAVCREIRKVSANVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALHRR AEVAEAAHDTSENTDETFDVITDHFKMNTKTRETYLDNQLIEGLTPKEFDLLYTLAKKPR QVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEKVGPQVIQTVWGVGYKFDDSGVA >gi|307679287|gb|GL456440.1| GENE 186 182613 - 184082 1546 489 aa, chain + ## HITS:1 COG:BS_yclK KEGG:ns NR:ns ## COG: BS_yclK COG0642 # Protein_GI_number: 16077444 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 1 482 4 467 473 325 40.0 2e-88 MKYLYQQLLAFIGVIALIILIVGTSFTQLTKRTMQENNYEQLYGYAESALETRDFFINVA GVSDRDVLSYSFQLTERVLQKQDVQFVFINKDREVQYPPVDSTKKLDFSLIDKNWDQIMK GNRVYATENIDIYGARNISSYVMLPVYASNQSSDKKVIIGSLVITQPAKNVDRSVQSVTQ NLIKGFIFSGVIALLLSYLFATFQVKRINRMRKATKEITSGNFDIQLPVHDKDEFDDLAE DFNKMAASLKESQEEINRQEERRRQFMADASHEMRTPLTTINGLLEGLQYNAIPENQKEN AIKLMQNETARLIRLVNENLDYEKIRTNQIQIVVKKFNGTEALENIVTQLTAKAEAAGNQ LYLDTTEPIDVYADYDRFVQVVVNIVQNAIQFTENGEIHIALEKGYLETIVRISDTGIGM TEEQILNIWDRYYKVDPSRKNTKYGESGLGLPIVQQLVRLHKGKINVESELGKGTTFIIS FPDVEITEN >gi|307679287|gb|GL456440.1| GENE 187 184121 - 184672 576 183 aa, chain - ## HITS:1 COG:no KEGG:EF1262 NR:ns ## KEGG: EF1262 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 183 1 183 183 308 99.0 7e-83 MNVTPSFKKTTEKKSSFDALALREVYGIIYSAPEQELALADFFQTNQLTITRLSSSETFL PYLPLEENLFIASTIKERDRKVVLAEAFQVFQLEPALLGRSFTSFTTFEKIKMRIIQLLL SKTSTLVIDDIFSSLTIGQRQEILPQLKIAVQKRNKRLLFLTKDPQIIDSPYVHPLSLHA LLN >gi|307679287|gb|GL456440.1| GENE 188 184687 - 185388 435 233 aa, chain - ## HITS:1 COG:no KEGG:EF1263 NR:ns ## KEGG: EF1263 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 233 1 233 233 364 100.0 1e-99 MRSVRYATASSFYHKKITLITALFFFLFSFLLTGLFNLIDFEKEFLRTMPDFVDIEKQTS YHYQLIQYYWHLYLGSVIFFGVTFLLLMYVTLRIKKEEIHTWYHMHFSNMYVTKQLLLEL CLPALLGIFSFLLFTLMFQETYNTVLWAARDAILQWSHLETPAFLAKSTDQDVTITNIQH LGIQTIQAFSFDFKSMQSLYTIRNCFVNCLILLGIPLVCGTPFTLIYLRTHKK >gi|307679287|gb|GL456440.1| GENE 189 185494 - 187602 1947 702 aa, chain - ## HITS:1 COG:SPy0807 KEGG:ns NR:ns ## COG: SPy0807 COG1368 # Protein_GI_number: 15674849 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Streptococcus pyogenes M1 GAS # 3 694 18 712 736 735 55.0 0 MKKLFKTNILNTRLGLFSLIAILLWLKNLFAYAVDFHLRLENINEYFILLINPIATTVFL LAIALYVRRKKASYITMMIIYFLMSLLLFSNVVYYREFTDFITVNTMLGAGKVASGLGES ALRLFRPYDVIYFLDFIIIGVLLLTKKIKTDARPVRARVAVSVTLLSVVFFLFNLFMAET ERPQLLGRQFSRDYIVKFLGLNAFTVYDGITTYQTNQVRAEASANDMKQVEDYVKQQYAA PDDSKFGIAKGKNVIYIHLESFQQFLVNYKLKDENGVEHEVTPFINSLYNSKSTFSFDNF FHQVGQGKTSDAETLLENSLFGLDQGSLFTQVGGKNTFEAAPDILKQTQGYTSAAFHGNA GNFWNRNETYKRLGYDYFFDASYYDVNSDNSFQYGLHDKPFFNQSVQYLEHLQQPFYSKF IAVSNHYPYSQFTNDEAGFPIAKTSDETINGYFATANYLDKAVEEFFNYLKSSGLYENSV IVLYGDHYGVSNSRNQNLAELVGKTKADWNDFDNANMQRVPYMIHVPGQENGGVNHTYGG QVDALPTLLHLLGVDTKNYIQLGQDLFSKQHNQIVAFRNGNVVTPKYTILGSSIYDTKTG TLITEPTEEVKKEVADLKAKATKQLETSDQITNGDLLRFYTNSGLKPVNPEDYDYKNQLQ QLEAIEKEKGEKSTSVYSKNNNKSTVDEYHTDSYQGYQKTGK >gi|307679287|gb|GL456440.1| GENE 190 187860 - 189032 1263 390 aa, chain + ## HITS:1 COG:L52686 KEGG:ns NR:ns ## COG: L52686 COG1092 # Protein_GI_number: 15672238 # Func_class: R General function prediction only # Function: Predicted SAM-dependent methyltransferases # Organism: Lactococcus lactis # 2 390 3 389 389 440 59.0 1e-123 MKLQVTKKAEHKFKKGYPLIQKEDLQQVPAPLPTDWLTLIDSKGQRLAEGYLGEQNKGIG WLLSWHGPINQSFFQQLFEISREKRTPFEKDSLTTAYRLFNGEGDGIGGVIIDRYADYAV FSWYNETLYQKKAELLTAFRTVYPDIIGAYEKIRFSTKDLPESQFLYGEQAPEPLLVTEN GVQFATYLNEGLMTGIFLDQKEVRGRLVDGFAVGKTVLNMFSYTGAFSVAAAMGGAVATT SVDLAKRSLPKTTEQFEVNHLNLAPQKIIVMDVFDYFKYASRKGLSYDMIILDPPSFARN KKKVFSVAKNYGELVKDSIDILTDKGTLIASTNAANLSLAKYQKMVITALQEKNVRYKIT DTYQLPADFQVNPNFPEGNYLKVLFIEIEK >gi|307679287|gb|GL456440.1| GENE 191 189099 - 190016 1057 305 aa, chain - ## HITS:1 COG:lin1191 KEGG:ns NR:ns ## COG: lin1191 COG1039 # Protein_GI_number: 16800260 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HIII # Organism: Listeria innocua # 4 304 3 305 308 253 47.0 2e-67 MAQNHVIKVSKKTLAEMTTVYQPNRLNKTVPYTVFVAKVGTTTITAYQSGKVMFQGPQAE KEAARWEGTSTTPKKKVSPQTTTLPADFGNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMI SKLKALGVRDSKELTDPQIIQLSHVIKELIPYKLLIVEPKKYNKIQPNYNAVHMKVALHN QAIYLLLQELAPTKPEGILIDQFTPENNYRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAA SIISRAAFLEELDKESAELGFSVPSGAGSKSDQVAARILKKGGLDLLANYAKLHFANTQK AQKLL >gi|307679287|gb|GL456440.1| GENE 192 190259 - 192655 2182 798 aa, chain + ## HITS:1 COG:L168650 KEGG:ns NR:ns ## COG: L168650 COG0474 # Protein_GI_number: 15672557 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 22 788 4 772 775 717 50.0 0 MQENEPIAVTANAERYYPEDKQGLTAAQVEERQRKGLVNAAVDTEFITTKQIVINNVFTY FNLIFVVLGVLLMLVQSYKNMTFLPVVIINTVIGIYQEIKSKKVLDSLNILNATKVTVVR DGQEQEISPDELVLDDVVLFKSGEQISGDAIVLSGEVRVNESLLTGESDEITKVADSQLL SGSFIVSGSCYARIDKIGAEAYVHQLTLEAKSIKKGEQSEMVGSINRLVKWVGIIIIPIG CVLFFQSYFINHQGLHDSIVSMEAALIGMIPEGLYLLTTVALAASTMRLAKRGVLLHNMK SIESLARVDVLCVDKTGTITENTMEVQELVPVVSIENDGTDLTNVEKLIGDFCRTMSADN DTMKAMKEFFVTNNQREAVSYTSFSSVEKFSSVTFPEATYILGAPEMILRDNYEMYQSEV EHYTSQGYRLLVFGKYLGEFQETLAAEVQPLGYILLWNPIRKEAKATFEYFAEQNVAIKV ISGDNPLTVSNVAQAAGIIGAENYVDARTLTTMEAQTEALEKYTVFGRVTPEQKKQFVLL LKKLDHTVAMTGDGVNDILAMKEADCSIAMASGNQATAQASQVVLLDSDFSTMPEVVFEG RQVVNNIERSSSLFLVKNIFSLLMSVFAMIFAVTYPLQPTQVTLISLFTIGIPSTFLALE PNHRRIEGKFLFNVLSKAIPGGLTDMLVVGALLICGDILALQKTDISTTATLLLVSVGFM VLYKISSPMNRYRKRVMIGCLIGMVITSISMKNLFSLTSVSPTALLLLAILFFAADSTFQ HLSTISEKVQLWFYKKRH >gi|307679287|gb|GL456440.1| GENE 193 192797 - 194683 1648 628 aa, chain + ## HITS:1 COG:lin0203 KEGG:ns NR:ns ## COG: lin0203 COG4932 # Protein_GI_number: 16799280 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Listeria innocua # 58 603 43 562 586 128 27.0 4e-29 MKKRSFVYWGMFFILLSTLITPFLKLETGYAQTEPTSTSETNQISATPNVVPRKQVGNIV TAIQLTDKEGNPLGTINQYTDIYLRIEFNLPDNTVNSGDTSVITLPEELRLEKNMTFNVV DDTGAVVAIAQTDVANKTVTLTYTDYVENHANISGSLYFTSLIDFENVENESKIPIYVTV EGEKIFAGDLDYQGEGDDVNEKFSKYSWFIEDDPTEIYNVLRINPTGQTYTDLEVEDVLK TASLSYMKDTMKIERGQWTLDGNAIWQFTPEEDITGQLAVQYGPDDRNFSVHFGNIGTNE YRITYKTKIDHLPEKGETFTNYAKLTENQTVVEEVEVSRVSQTGGGEANGEQYVVEIHKE DEAGQRLAGAEFKLIRNSTNQTVAKITTDQNGTAIVKGLLKDNYTLEETKAPTGYQLSQN KISITPEDFGKNLVALKTVVNHKISYQPVAASFLAGKVLLGKPLKDAEFQFELLDEKGTV LETVSNDTLGKIQFSPLTFETPGNYQYTIREVNTRQAGVSYDTHNLQVQVTVEALLGNLV ATTQYDGGQVFTNHYTPEKPIESTTPPMSGTTDTTTNSTTETTSITIEKQAIRNKELPKT GETKENAFLFLGSLLLIQGLFIYFKTKK >gi|307679287|gb|GL456440.1| GENE 194 194889 - 195362 617 157 aa, chain + ## HITS:1 COG:lin1358 KEGG:ns NR:ns ## COG: lin1358 COG0779 # Protein_GI_number: 16800426 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 157 1 155 155 172 57.0 2e-43 MSSAVETVTKLVTPILEEQNFELVEVEFVKEGKNWFLRVFIDKEGGIDIEECAFVSEKLS EKLDAMDPDPIPQAYFLEVSSPGAERPLKKESDYEQAVGKYIHISLYQAVDGEKQIEGTL VHLDSEQLTLSVKIKTRVKEMTFERKNIAKARLAIQF >gi|307679287|gb|GL456440.1| GENE 195 195506 - 196705 787 399 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis 16M] # 4 372 9 372 537 307 44 4e-82 MSKEMLNALDVLEAEKGIPKDTVIEALQAALVSAYKRHYGQASNVEVEFEPKKGNIHVYA VKEVTEEVFDSQLEVSLKDAVALNGAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVRE AERTIIYNEFSEYENDIMQGIVERQDRRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKV YVSRVENTSKGPQVFVSRSHPDLLKRLFEQEIPEVYDGIVEIVSVAREAGDRSKVAVRST DPNIDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIYISNALNPAQVLDVIFDPE NSKACTVVVPDYQLSLAIGKRGQNARLAAKLTGHKIDIKSESDMAEFYEQQANQEVAEVA EEMDEAIIHSDMTADDYENLAAEEAVVEAEITEELPEQE >gi|307679287|gb|GL456440.1| GENE 196 196726 - 197025 525 99 aa, chain + ## HITS:1 COG:L175136 KEGG:ns NR:ns ## COG: L175136 COG2740 # Protein_GI_number: 15672747 # Func_class: K Transcription # Function: Predicted nucleic-acid-binding protein implicated in transcription termination # Organism: Lactococcus lactis # 1 94 1 94 108 96 53.0 1e-20 MKKRKIPMRKSVVSGEMKPKKELVRITRSKEGEVALDPTGKLPGRGAYVDLDPAEVQKAW DKKILDRVLETKLSDEFYQELLDYVTHQKARKELFGDGK >gi|307679287|gb|GL456440.1| GENE 197 197015 - 197320 495 101 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375842|ref|NP_814996.1| ribosomal protein L7A family protein [Enterococcus faecalis V583] # 1 101 1 101 101 195 100 3e-48 MENKTKILNLLGLAMRAGKLVTGEELTLKDIRANKAKFVFVAQDASENTRKKIKDKSSYY NVPVSELFSQFELSQAIGRPRMVIGVTDAGFATKIKELLKG >gi|307679287|gb|GL456440.1| GENE 198 197333 - 199729 2652 798 aa, chain + ## HITS:1 COG:lin1362 KEGG:ns NR:ns ## COG: lin1362 COG0532 # Protein_GI_number: 16800430 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 2 (IF-2; GTPase) # Organism: Listeria innocua # 1 798 1 781 782 842 59.0 0 MGKKRIYELAKEMNKASKDVVDKAHQLGMDVKNHMGAISSEQETKLRQAFGGGSTVNTQS KATNNQKQQTTQNKPANKKPMNNKPGEQRNNQNRPNNQSTNGQQRNNNNQNRHGQSNTQN RSNQTNTNNQNRNTQNNNGSTTNQNRTNQNNNGGNNQNRGGQNRNNNFGGGQNRNNRNNF NNQNRNRFNKKGKKGKHQQESAKPAVPARKFRELPDVLEYTEGMNVADIAKKIHREPAEI IKKLFMMGVMVNQNQALDKDTIELLAVDYGMEPQEKVQVDIADIDKFFEPEAVVEENLTT RPPVVTIMGHVDHGKTTLLDTLRHSRVTSGEAGGITQHIGAYQLDIDGKPITFLDTPGHA AFTSMRARGASITDITILVVAADDGVMPQTIEAINHAKAAKVPIIVAVNKIDKPGANPDH VKQELSEHELIPEEWGGDTIFVNISAKFNQNIDELLENILLIAEVEDLKADPTQKAIGTV IEARLDKGKGPVATLLVQQGTLHVGDPIVVGNTYGRVRVMTNDMGRRDKEAGPATPVEIT GLNDVPQAGDRFVVFEDEKTARQAGEERAKRALLEQRSASSRVTLDNLFESLKEGELKEV NIIVKADVQGSAEAVSASLQKIDVEGVRVKIVHAAVGAINESDVTLAAASNAIIIGFNVR PTPQAKQQAEQEEVDIRLHRIIYKALEEIETAMKGLLDPEFEEKITGQMTVRELYKVSKV GTIAGCYVTEGFIRRDSGVRVIRDGIVIYEGKLASLKRFKDDVKEVKLGFECGAMIENFN DLRVDDAIEGFIMEEIKQ >gi|307679287|gb|GL456440.1| GENE 199 199754 - 200104 647 116 aa, chain + ## HITS:1 COG:SPy1719 KEGG:ns NR:ns ## COG: SPy1719 COG0858 # Protein_GI_number: 15675570 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-binding factor A # Organism: Streptococcus pyogenes M1 GAS # 1 113 3 115 118 135 61.0 2e-32 MANYRDRRVGQEIMREVNDILNKRIRDPRVQGITITDVRVTGDLQQATIYYSLLSDLASE QQKAQQGLDKAKGLIRKELGQRLTLYKTPELIFERDESVQYGNHIDELIRKLNQGE >gi|307679287|gb|GL456440.1| GENE 200 200187 - 200417 70 76 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307291257|ref|ZP_07571141.1| ## NR: gi|307291257|ref|ZP_07571141.1| hypothetical protein HMPREF9509_01563 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9509_01563 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9496_00084 [Enterococcus faecalis TX4000] # 1 76 1 76 76 119 100.0 8e-26 MKRIVVFYKNGDRYLKEMGSGKSSLYFFLFLFVLHSMREHIIQFIGFWPSFIFVLILVPN LMLGVGHINHWYKNRS >gi|307679287|gb|GL456440.1| GENE 201 200334 - 200441 77 35 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLKSILENSRAVFVPMVNMSNAKHKIGDKYKDEYK >gi|307679287|gb|GL456440.1| GENE 202 200477 - 200950 546 157 aa, chain - ## HITS:1 COG:no KEGG:EF1276 NR:ns ## KEGG: EF1276 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 157 1 157 157 283 100.0 2e-75 MNDYEKLVSSIQKDVTVLEIDLYNQTGCYGLYRNGKIYIEKTLSTRQKKNILAEEYGHYQ TSVGTILNQNCTENRKQELKARNVALEQLVTLDDLIRCSEAGLSNHYSCAEFLEIDVETL KNVITYYRQKYGATYLYKGRIFEFRDYSVMVLNTGLT >gi|307679287|gb|GL456440.1| GENE 203 200997 - 201479 594 160 aa, chain - ## HITS:1 COG:FN2065 KEGG:ns NR:ns ## COG: FN2065 COG1396 # Protein_GI_number: 19705355 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Fusobacterium nucleatum # 4 78 7 79 155 58 45.0 6e-09 MNIFTIRLKEALTAKNIKPSELAKKTGIGKSSISDWLAGRYEAKQDKVYRIADALDINEA WLMGQEVPMEKNASTIDRIYKKLEPQRQAIVYQFAEQQLHEQQTQAEILSFPRRDEMTLA AHAGDPEKIFSKEEIEKIHDYLDEIDAKYQQSISSDKKED >gi|307679287|gb|GL456440.1| GENE 204 201697 - 201831 175 44 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSRNYKKTLSDMLLLAIILLISSVSIKIGAIVIGMIGLMELLTE >gi|307679287|gb|GL456440.1| GENE 205 201862 - 202632 781 256 aa, chain + ## HITS:1 COG:no KEGG:EF1279 NR:ns ## KEGG: EF1279 # Name: not_defined # Def: DNA replication protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 256 1 256 256 498 99.0 1e-139 MAERRMFAKTIIDSDAFLDMPLSSQALYFHLAMRADDDGFINNPKKLQRMVGCGEDDLKL LMVKKFILVFESGVIVIKHWKIHNYIRSDRYKPTLYQEEKNQIVEKNSKAYTFKAESSVS GQPADYQRLPQESIVQSKLGQSQGSSSENDCLKTIYHFYEENGFGTLASKTSQDFKYWLQ DFIQKGASQEEACQLILHALGIAVDRNKRNYGYVNAILKSWEQQNYLSVHEVLVNDKKQV LEHAPQMTEEYQELGF >gi|307679287|gb|GL456440.1| GENE 206 202651 - 203493 810 280 aa, chain + ## HITS:1 COG:L0312 KEGG:ns NR:ns ## COG: L0312 COG1484 # Protein_GI_number: 15673401 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Lactococcus lactis # 48 275 62 291 294 102 29.0 9e-22 MHATDQTFQILLSQLLEKVEDRCPECGSEQYVWQQKNKDGTERCAPTCWSCGYKMLKKHE QEATQQRSQESFMARTQKFFHQGSLIADDALRQCRLTNYQTAELETRQAKERALAAVSAI VEGKPIHVIFSGKPGVGKSHLAISILVEVLERSAYQKYCLFVSYSELLEKLKMSMNESAK SQAKAQAYITRMKKADVLVLDDLGAELGIKNKVSTDFNNDILNRILEARQNKATIFTTNF SGKQLVEAYGTRIISRLMKHASGYVFQYKDTTDKRMRSVK >gi|307679287|gb|GL456440.1| GENE 207 203496 - 203588 212 30 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLTIIIGFIFWTMTLMLGYLIGEREGRKHE >gi|307679287|gb|GL456440.1| GENE 208 203581 - 203952 339 123 aa, chain + ## HITS:1 COG:no KEGG:EF1282 NR:ns ## KEGG: EF1282 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 123 1 123 123 212 99.0 4e-54 MSNLTKCKKDLFEMKSVVFKDISKQQSEKAQKRKRLLQLMNQYPDWASQKNKLIMQEIQE LGQAIGNWSMDQSRPIQSIKAASFTKSEYLYLIWLGYSDEAIRHGLDMSKECYFIYRLTL LNE >gi|307679287|gb|GL456440.1| GENE 209 203972 - 204379 595 135 aa, chain + ## HITS:1 COG:no KEGG:EF1283 NR:ns ## KEGG: EF1283 # Name: not_defined # Def: RinA family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 135 1 135 135 248 98.0 4e-65 MRTSTFNYIKDILADFYKTDEYIRQREEELRHPYQEADLNAGIRGQGLHSAVTERMAITI AMDRRLWNLERNRDIIKNCLAEADEQTRVIIEELYMKKRPSLTLIGLAQQLFISKSQAYK LRNHFFEAVADELGM >gi|307679287|gb|GL456440.1| GENE 210 204625 - 205017 407 130 aa, chain + ## HITS:1 COG:no KEGG:EF1284 NR:ns ## KEGG: EF1284 # Name: not_defined # Def: structural protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 130 1 130 130 249 100.0 3e-65 MNEAEQELYEALVAICQTSGFLLLEELPTDLPDQPFVYLGDSKELPKPTKSAILGEIELI MHVYGALSERQQISTIKGTILRQATSNLKRTAHFNWGIKHQEVKAQMVKDTKQMKKTIWH AVLPLHMQFY >gi|307679287|gb|GL456440.1| GENE 211 205030 - 205542 971 170 aa, chain + ## HITS:1 COG:no KEGG:EF1285 NR:ns ## KEGG: EF1285 # Name: not_defined # Def: major tail protein # Organism: E.faecalis # Pathway: not_defined # 1 169 1 169 170 310 99.0 1e-83 MGEVMQGKDRILLVRRLDEAATKKAMKPLFQIEHEWEFSRESSGTQTKDGVANAVSGLEV TLSLSGLASRDDENLYMKDAVEDGILMEFWDVDLKGEKNAEGKYPAIYAQGYVNSWSLPA NVEELVEIETEASINGKPQDGFATVEADIIAEAQYAFQDTVPEKAPQPGA >gi|307679287|gb|GL456440.1| GENE 212 205576 - 205935 439 119 aa, chain + ## HITS:1 COG:no KEGG:EF1286 NR:ns ## KEGG: EF1286 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 119 1 119 119 207 100.0 9e-53 MNLEINGKTIEVKFTIGAIRELDKRYQIENGAAKFGMGISSAMIYLRQYNPVILVDIMEA LQSGQLKIGKSEIEAWLMTQDVKKLSDDLLKEMGKQPLTKPMIDQFSKEAKKAEAQATN >gi|307679287|gb|GL456440.1| GENE 213 206022 - 206321 330 99 aa, chain + ## HITS:1 COG:no KEGG:EF1287 NR:ns ## KEGG: EF1287 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 99 24 122 122 141 100.0 8e-33 MTMSEFELRMIAFNLAEVDEERKRHELAYLNVKAQATNKKGKPVFESFKSFYDYEKRVAE VLAANQPQRTKLNERKKTQLATVAERLRRYREGRRVDGE >gi|307679287|gb|GL456440.1| GENE 214 206311 - 209244 3602 977 aa, chain + ## HITS:1 COG:BH0012 KEGG:ns NR:ns ## COG: BH0012 COG5412 # Protein_GI_number: 15612575 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Bacillus halodurans # 610 976 137 509 509 125 28.0 4e-28 MENDKEKTPLSEAKKSLAGVQQALKSMSGEYALLSGYLGKISAGVNQSATVMNTFKTVMQ QSGETVKKTGDETAKAADQMNTALTDSAEQAGEAAKKAGKETSDGFTNAQNNMLSFGTAM TSAVSLPMLNVLKTAMGVGAGVSGEFQGMQGLIMASAGGISDSLQGELQGALTQMNQSFE AAAQVIQSVMAPGMEILVQVVITVVKGITALVNLFIKLPKPVQVFIVAIMGILAAIGPML IMVTMAQQKFQQFSAGLALVQGNIGKLGGGLSKLSANFSALGGGPLILIVAAVLAAVAAF IYFYKTNETFRNSINSLASAIQGAVSAAFGKLVGLLQQIQPAFQQVMAVFKQFFAVGLEK MATIFSTIGRVLAGVFASGLQLGSNLLGQFGGTFDKAGLAVGLLVKVLTKVALAALGISG PFGLIISLIVSFVTAWMKTGDLSAGGITQVFDNLGNTITSVTTMLAANLPKVIQLFTTVL TSILGKITEAIPSIVTALSSLITLIVGAIVANLPVLIEAATQIITTLIQGITTVLPMLIE VGLSLLMTLVNAIVTALPTITTAAINIITTLVTAFVTALPMLVTAGVSIITALVNAFVTM LPLILTAGLQILMALITGIMTILPQLIQSALTIILALVTALIGALPQIISAGVKLLMALI QGIISILPTLVAAAITLILTLINALIGALPQIISAGVKLLMALIQGIISILPQLVTAAIT LITALMGALINALPQLLSAGIQLIQALINGVLSLLGALLSAAGTLISQMITKIGSYFGQL LASGGQLVENIKNGVTNAADQVKNAIGSVIEGAWQAIQGWFSKFTDAGANIVGMIADGIT GAIGKAKEAIDGVVSKIRNFLPFSPAKEGPLSDLHKLNFGGTIATGIYAGETAVSRAMAS ILDLPLLNDFALDLTGRGNFTATIDHRLENDAYNRPLFVTVESTLDGKVVAATTAPYLAT ELQRQQVKQNNRLGRRG >gi|307679287|gb|GL456440.1| GENE 215 209246 - 210172 1154 308 aa, chain + ## HITS:1 COG:no KEGG:EF1289 NR:ns ## KEGG: EF1289 # Name: not_defined # Def: tail protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 308 1 308 308 616 99.0 1e-175 MYKFVDTNQATHSTPLPSEALNFNGQFLEKVIPGYQTLSVSGRELVPSEIESYQLGIRDG KRHVYARIPERELTVKYRLSAVNNEAFRDAFNHLNVALFTEKDVSIWFNDEPEMLWFGSK SSVSDVPEGVNQVTGTFTLLLSDPYKYTRSDATSVMWGSPTITFQANYLMGNTGSGAVDF PILIEGGAYWGSTMITFQNRAYTMGDLGKEVRPIEIYTTVEGLKVKPTIILIGTGRGVWI KTRNDTINLGDFDRSEIIIDTENFYLTKNGAPMIRPMNDFYLYPNEPLYIQAKDSDFRLT IRYPNRFV >gi|307679287|gb|GL456440.1| GENE 216 210185 - 211642 1196 485 aa, chain + ## HITS:1 COG:no KEGG:EF1290 NR:ns ## KEGG: EF1290 # Name: not_defined # Def: structural protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 485 1 485 485 960 99.0 0 MLMALDLKRTYTAILDNAYQVSYEKIENKIGSLDFTMPLDDPKNEFIAEMQWVELTDNEN EYIGLYRVMPTTIKKDANNNQIHYSATEALCTLGDTVLFGCHEIKNKTTKEAIQFLLNKQ KTKHWVLKKCDFSRKLTYKWENENGLVEPLFSIPADFEEEYLWQWNTEVYPFELSLVKPP TEPVARIQEGYNMQGFEIERNPKMLINRIYPLGSGEGVNKVNIRSVNQGVPYLENKAAID RYGLLESIWVEQRFSDPKALKENALRMLEEWTKPQVSWVVTAADLIKLTDQPLAIDRLRL GTVIMINTNEFGSVNLRIKKESKKDVFGAPQDIQLELGNLQETIHSTMTAFSRKQEISET YAQGATTLLNRSIQGELNKTQPVELNLYFDEDILYVNTAELTFKATAKGPSHSVTNIDLV VDGKKLPQLSLQQQRLNILSYLRKTTDGKIERGNHTLQFFSHQPLWLDASVICRVYIQSQ LGGQF >gi|307679287|gb|GL456440.1| GENE 217 211675 - 213444 1613 589 aa, chain + ## HITS:1 COG:no KEGG:EF1291 NR:ns ## KEGG: EF1291 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 589 1 589 589 1012 94.0 0 MSVEHIEELDTLNQGRLKINAILDQSNASAEKVDAYQVQLTNGISEAKNIADEAGKEAVQ IATDAGNQANETANQAMNNAKTAITIAGNAVSTANNNKQEFDTLRNDFDQLVAEAGDSNP EIVQARTDTQGIKQATLANRLQIDLNDRMTKADGISLLAKPTTVKLKLDFNGKTAGNTAT NANSYSTDFTAKILKKPTDVWEEVSQADYNKMASRDDEGVKTGSTQSGVIPQQLAAFNLV EAAKKLIPQMFETFTTDEAVAFIRQNVQFFTINQRVKAAAPNNQTIKIATYLPTTDNWVT QIQESAKEFGDFSIQINDQNFITDEGFIYLMSYTDSSNGVTPASVEVDYVGLHIGLSVDA QAVLAKSGFVQAEQLNTHVENQDNPHQVNAEQVGLGNVENYGFASDSEAVAGTLTSKYMH PKNVAEAIKGQAVTQTGDQEIAGVKNFMTMPTVNGVPLESSRMAIYEASGVGEVEAKYQA AFNKDNMKFVLIRVGNRVDAFVRCNLSDPTKLNNQVVKVFNVPTGYSINSVIKRNTWNIP LTAVQYNFPQPICTALYEMDNKGIIFCSNRAGNIYLQGSWYTDDPFPTK >gi|307679287|gb|GL456440.1| GENE 218 213468 - 213863 456 131 aa, chain + ## HITS:1 COG:lin0175 KEGG:ns NR:ns ## COG: lin0175 COG4824 # Protein_GI_number: 16799252 # Func_class: R General function prediction only # Function: Phage-related holin (Lysis protein) # Organism: Listeria innocua # 15 124 12 122 140 66 36.0 9e-12 MERYLNTITMLLSIFGGIVVRLLGGLDQLLDVFLFLIIVDFITGWIKAIATKELSSRIGM LGIAKKVTMLFVVAVAVRVEKVVGNNLPIREMVLIFYIANEGLSFFENIATFIPMPKKLK ELFIQLKNKDD >gi|307679287|gb|GL456440.1| GENE 219 214009 - 215106 1375 365 aa, chain + ## HITS:1 COG:SP1937 KEGG:ns NR:ns ## COG: SP1937 COG5263 # Protein_GI_number: 15901761 # Func_class: R General function prediction only # Function: FOG: Glucan-binding domain (YG repeat) # Organism: Streptococcus pneumoniae TIGR4 # 50 200 26 177 318 83 36.0 8e-16 MFKKLMIQLALVIGLSLTIPMTTCAYTIEADPINFAYFPGSASNELIVLHESGNERNLGP HSLDNEVAYMKRNWSNAYVSYFVGSGGRVKQLAPAGQIQYGAGSLANQKAYAQIELARTN NATTFKKDYAAYVNLARDLAQNIGADFSLDDGTGYGIVTHDWITKNWWGDHTDPYGYLAR WGISKAQLAQDLQTGVSETGETVIIQPGKPNAPKYQVGQAIRFTSIYPTPDALINEHLSA EALWTQVGTITAKLPDRQNLYRIENSGHLLGYVNDGDIAELWRPQTKKSFLIGVDEGIVL RAGQPSLSAPIYGIWPQNTRFYYDTFYIADGYVFIGGTDTTGARIYLPIGPNDGNAQNTW GSFAS >gi|307679287|gb|GL456440.1| GENE 220 215260 - 216180 957 306 aa, chain + ## HITS:1 COG:lin1365 KEGG:ns NR:ns ## COG: lin1365 COG0130 # Protein_GI_number: 16800433 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridine synthase # Organism: Listeria innocua # 1 303 1 299 304 312 53.0 6e-85 MDGILPLWKERGMTSHDCVFKLRKILHTKKIGHGGTLDPDVEGVLPICVGKGTKVIEYMV DSGKTYEGEITLGFATTTEDVSGEIVEKKPVTAPLSTEQIDQAMAEMTGEITQIPPMFSA VKVNGKRLYEYARNGEEVERPQRKAMIYSFERTSEPIFNESAQTQSWRFKVVCGKGTYVR TLSVDTGKKLGYPAHMSDLTRTASGGLQAAQCLTLEEVAKQMAAETIDQCLLPIETAVEQ FPRIDLSDELYQKVKNGMRLHKKELGIKAMPESLVALFYQNQVVSLYMPHPTHDKLLKPS KVLRNN >gi|307679287|gb|GL456440.1| GENE 221 216206 - 217156 611 316 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 [Bacillus selenitireducens MLS10] # 1 310 1 312 317 239 41 9e-62 MQVIQLHHPYEPNQIPNEEVVMVLGFFDGVHKGHQKVIETGKKIAEEKGLKLAVMTFNQH PSIVFQKVLPENMKYLTSLEQKERLMANLGVDILYIVEFTSAFAQLKPQDFVDQYIVNLN SAVAVSGFDYTYGPKEIAGVKQLPTYAQGRFEVVTVPKEEMTGAKISSTRIREKMEAGEM EEVTELLGYIYETEGTVVHGDARGRLLGFPTANVKVKSTVRLPRIGVYAVQIEVGGKWYV GMGSIGHNDTFGKGRDLTVEVYILDFHQDIYGEQVVVRWNHYLRDQVKFNGAEALIDQLK QDERDTADYFQQSEDK >gi|307679287|gb|GL456440.1| GENE 222 217156 - 217752 674 198 aa, chain + ## HITS:1 COG:MA1701 KEGG:ns NR:ns ## COG: MA1701 COG3153 # Protein_GI_number: 20090553 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Methanosarcina acetivorans str.C2A # 1 198 17 207 217 118 34.0 7e-27 MKIRQEKPAEYQAVERLTYQAFKELNLTENWRPTEHFIVHLLRESADFIPELSLVSETDQ GKLTGHIMSSKAKLRLPDHTEKAVLTVGPLSVHPEAQNTGVGSALIKHSVQKAKELGIGG LIILGHPTYYTKFGFVPATTFQITLPEKETSEALLALELLPGYFGTSGGEWHFSTCFAYP ETHPAELEAFEADLGINE >gi|307679287|gb|GL456440.1| GENE 223 217902 - 218225 318 107 aa, chain + ## HITS:1 COG:lin0727 KEGG:ns NR:ns ## COG: lin0727 COG1695 # Protein_GI_number: 16799802 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 4 103 5 104 110 114 63.0 5e-26 MKQTELLKGILEGLVLAIIQRKETYGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVI AEKKPSEKGPMRKFYRLTSSGEAELADFWQRWTLLSKQVNKMKKMEG >gi|307679287|gb|GL456440.1| GENE 224 218229 - 218570 448 113 aa, chain + ## HITS:1 COG:lin0728 KEGG:ns NR:ns ## COG: lin0728 COG4817 # Protein_GI_number: 16799803 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 14 108 11 104 107 73 39.0 1e-13 MSNFKALIKKVVGDKKEYKEYKRRIAALPAEYRQVFQEIEKYAWHFSDHSGANMFNALTD LLDLFEEGAANGTPIKNITGEKVGDFAETIVNEVAGKWTDKQKEKLNHQFSKQ >gi|307679287|gb|GL456440.1| GENE 225 218596 - 218856 266 86 aa, chain + ## HITS:1 COG:no KEGG:EF1299 NR:ns ## KEGG: EF1299 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 86 1 86 86 129 100.0 4e-29 MVENFFKEGKLLVIPKKNAKKVQVFQRVANQFEFGKEYTEKEVNQRLREIYEDYALLRRY LVDYQYLERDKFGKIYQKCEQHTKII >gi|307679287|gb|GL456440.1| GENE 226 219015 - 220190 973 391 aa, chain + ## HITS:1 COG:SPy0609 KEGG:ns NR:ns ## COG: SPy0609 COG0772 # Protein_GI_number: 15674690 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Streptococcus pyogenes M1 GAS # 11 378 23 405 434 205 35.0 1e-52 MNLRTLGLTKILLTFIILSIIGALMIYSASSYDLLMQGVKPTAVFIKQGIIMCLSWVLMF VIYKVRLEVLFNKKIAIGLLLVSILLLLMVRLPFFGVAANGAQRWISLFGIQFQPSELCN FAIIYYLSCYLGEKENGLTTKQLRKQWLFVLVVAFLVLIQPKVGGAILILVIGSVLIFSA SIHAKFSVIAAGIVVASAALLSKIIIFLGDHRYLPHFFAHVYDRLVVLKNPFLSFHDRGF QPSMAYLAMYNGGFWGTGLANGMVKKGGLPEGQTDFIFAVIVEELGLIGGLLLLFLLLFL AASILRSSCVIKNHCYGLFLLGGGTLILAQTAINIGGVLGLIPMTGIPLPFVSYGGTSYL IFSVALGIVIKIIANERRQLNGQYKKIQLTS >gi|307679287|gb|GL456440.1| GENE 227 220156 - 221304 903 382 aa, chain + ## HITS:1 COG:L115706 KEGG:ns NR:ns ## COG: L115706 COG0772 # Protein_GI_number: 15672878 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Lactococcus lactis # 3 375 7 381 414 247 39.0 3e-65 MVNTKKFNLHLNYDLLLPIFLLTLLSSGVQYWIAVNEGKDGTVPALKQLFFIFVGYAGMF LASRLSQKFIWKVAPFFYGFSLILMSALYFSYDKGMYLLTGTKRWLDLGFIKFQPSEIAK IAFILMLAKIIVQHEQQDWSDKWRSDKQLLKKIVAVSVPVFFLMAVQKDFGTSLVFVTII LSLLVISGIDRKILIIIFSALATLGVVLILLVFTEWGHKVLFFLHFKQYQLDRILAWIHP YDYVDKISYQQVQGLLAIGSGGLFGKGVHGIEVYVPVRESDMVFTFIGEAWGFVGSATVV FLYFYLFYQVLVAGLRSNSRFCMYICVALIFSLVFQTVENIGAVIGLLPLKGIPLPFLSQ GGTSLVMAITSLGFVKGREAAT >gi|307679287|gb|GL456440.1| GENE 228 221366 - 222253 860 295 aa, chain - ## HITS:1 COG:ECs0391 KEGG:ns NR:ns ## COG: ECs0391 COG0583 # Protein_GI_number: 15829645 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 6 244 6 241 299 84 27.0 3e-16 MELFRLHYFLELCKVKQFTKAAENLAISQAALSKQIKILEATLGAELFNRQGQTTTLTPA GLILEKYCWRITNELVSIEEELKEINHSSNHIYVATYLCDLEYKLNDLLMTTLTDRSSNL QVHTIITENILQSLETMDADFGISFADLPLPEHIGKIDLFTANYQFILRNDHPALAKATT EEILKELTMYPFVRLNTEFSEQNKLTNWLDTTFSNFSPEKVIQVDTLSLITHLVSHSDSF AIVPEYTNIQLLDNSIHTLTYQELPKRNMAVYYLKERYMSRQLQQLLAECQKQFQ >gi|307679287|gb|GL456440.1| GENE 229 222277 - 223152 878 291 aa, chain - ## HITS:1 COG:cynR KEGG:ns NR:ns ## COG: cynR COG0583 # Protein_GI_number: 16128323 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 247 1 247 299 94 29.0 2e-19 MKLQQLEYFMAVSKYASFTLASQKLHTSQPYLSTQLKELERELGASLILRDKKHCRLSPA GEVVAKRTEMIFALIKEAQEEINELVTQGSTTTIRIGTNLIDIDKAFGEVLLLFNQSYPY VSIDFKYYYDLETALETDLIDIGIGIFLDTSIPLEKELIYTESYLLCVNKNHPLAHADSV TIDEIRSLPFAAYSDQVYEKKVFKRWERKINWENRQIVIELPSLHLVLDMVQREKACSIL PYSLTDELNRRNLVGIPLEDSPERAIYLVQNNHHGHCEAHRYLFEQLRYLF >gi|307679287|gb|GL456440.1| GENE 230 223631 - 223720 102 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEDEPIVNSSQQQINEVKENGKENASLGP >gi|307679287|gb|GL456440.1| GENE 231 223689 - 226349 2539 886 aa, chain + ## HITS:1 COG:L85514 KEGG:ns NR:ns ## COG: L85514 COG0474 # Protein_GI_number: 15673239 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 20 886 33 910 910 923 53.0 0 MEKKMRHLGHDYSYKKFAHSEAEKVLQRFGSTWDGIKHQDIEELQERYGRNKIMNEKKAS RLRLFIKSYITPFTLVLLALATISFFTEYVYAAPEEKDVTGVLIMLAMVILSGTMSFVQS VKSSNAVEKLQNMIKVTATVIRDKKQMEIPIEEVVCGDLVQLSAGDMIPADLRLIQSKDL FVSQSSLTGESFPIEKHATHQKDSDQIDTEYDNLLFLGTNVISGTGLGIVIKVGNQTLFG RMASDNGEEQQQTSFETGINKTTWVLIRFMLVITPTVFLINGLTKGDWVEALMFAIATAV GLTPEMLPMIVTTNLVKGSREMAKEGTIMKNVNAIQNFGGMDVLCTDKTGTLTQDKVILE YHYNIGCQEDQKVLDLAFLNSYFQTGLRNLMDNAVIQAATQESDIQSDDFYKVDEIPFDF NRRRMSVIIKEFKTRETRLITKGAVEEMLLVCTQVLLDGEIVPLTETLRQKITKDVEALN RDGLRVLAIADKKVEAAEWEYTTKDESELILQGYLAFLDPPKETAAAAIHALHQHNVAVK VLTGDNQYVTHSVCKEVGLAGEKIITGNELQQLNQEELRKTVQAYNIFAKITPDQKVRIV NALTENGQTVGFLGDGINDAGAMRAADVGISVDTAVDVAKESADVILLRKDLMVLEKGIL SGRRVFTNTMKYVKLTASSNFGNVFSVIPASIFLPFLPIAPIQSLLLNLIYDTSCMSVPW DKVDEEYVEKPKKWEPKSIGNFMRWFGPTSSIFDIVTYLFMYFIVCPAILGGSFFELNGA DQLLFIGIFHAGWFIESLWSQMLVLHFLRTEKMPFLQSSASGIMTLVTTAGIVLGTVLPF TAFGAELGFVGLSPSYFLYLIPTIVAYLALVAFIKVLYVKRYGQLL >gi|307679287|gb|GL456440.1| GENE 232 226557 - 227741 1194 394 aa, chain + ## HITS:1 COG:lin1513 KEGG:ns NR:ns ## COG: lin1513 COG0635 # Protein_GI_number: 16800581 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Listeria innocua # 17 389 13 385 385 426 54.0 1e-119 MTKTNQLSTSTPMFDRSAYIHIPFCEHICYYCDFNKVFLEGQPVDEYIQSLLKEIQLTQA LYPEQEMKTIYIGGGTPTSLSAKQLDVLLKGVREQLTFDDRNEFTVEANPGDLTQEKLQV MKNYGVNRLSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTNVSIDLIYALPGQT LESFRDTLTRALALDLPHYSLYSLILENKTMFMNWVRQGRLQLPEEEIEAQMFDETIEAM EKKGRHQYEVSNFALTGKESQHNLAYWNNDHYYGFGAGASGYLGQTRYKNHGPIQHYLKP LRENQLPIVETEELTRLNQIEEELFLGLRKKVGISKQKFQQKFQEPIEAIYGEVIQRLIK EELLIEEADILRLTKKGLFVGNNVFEAFLLSEKE >gi|307679287|gb|GL456440.1| GENE 233 227967 - 229010 1169 347 aa, chain + ## HITS:1 COG:lin1512 KEGG:ns NR:ns ## COG: lin1512 COG1420 # Protein_GI_number: 16800580 # Func_class: K Transcription # Function: Transcriptional regulator of heat shock gene # Organism: Listeria innocua # 1 343 1 341 345 265 40.0 9e-71 MITERQQNILRLIIQNYTNTGLPVGSKKLMEDGIASSSATIRNDMKALEEYGLLAKTHSS SGRIPSMAGYRYYVDHLLQPTQVEENELRRIRQSFGKEFHEINDIIRQSAEILSELTSYT AFSLGPEVKERKLTGFRMVPLNDRQVLAIIVTDKGNVENQVFAIPAAVSSQDLEKMTQII NDKLVGQPLLTVYHRLRTEIPMILHRYFQTPEGMMNLFDEMLGHAFEEKVFVGGRMNLLD FGIKQDIEQLKSVYSFMQNSDELTHLLNGSATTENPIVFRIGSEIGNNLLEDMSMITATY EVSGHGKGTIALLGPTSMPYSKIFGLVDTFRHELASQLGDYYRFLGN >gi|307679287|gb|GL456440.1| GENE 234 229065 - 229604 805 179 aa, chain + ## HITS:1 COG:SP0516 KEGG:ns NR:ns ## COG: SP0516 COG0576 # Protein_GI_number: 15900430 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone GrpE (heat shock protein) # Organism: Streptococcus pneumoniae TIGR4 # 25 177 24 172 174 132 55.0 3e-31 MSKKEEKQEELQEEMEAVDAAGVSEVEVEATEIENLKAELSEMEDKFLRARAEIANMSNR NKNERELLVRYRSQDLGKKILPSIDNLERAMAIEVSDEQGESLKKGISMVLESITVALKE EGIEEIPAMGETFDPNLHQAVQTVPASEETPADTIVEVLQKGYKLQDRVLRPSMVIVAQ >gi|307679287|gb|GL456440.1| GENE 235 229664 - 231493 2600 609 aa, chain + ## HITS:1 COG:BS_dnaK KEGG:ns NR:ns ## COG: BS_dnaK COG0443 # Protein_GI_number: 16079601 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Bacillus subtilis # 1 607 1 607 611 857 81.0 0 MSKIIGIDLGTTNSAVAVLEGGEAKIIANPEGNRTTPSVVSFKNGEIQVGEVAKRQAVTN PNTISSIKRHMGEAGYKVDVEGKSYTPQEVSAMILQYLKGFAEDYLGEKVEKAVITVPAY FNDAQRQATKDAGKIAGLEVERIVNEPTAAALAYGLDKTDKDEKILVFDLGGGTFDVSIL ELGDGVFDVLSTAGDNNLGGDDFDNKIIDYMVAEFKKENGIDLANDKMALQRLKDAAEKA KKDLSGVTSTQISLPFITAGEAGPLHLEMNLTRAKFDELTSDLVERTKVPVRQALKDAGL NPSEIDEVILVGGSTRIPAVVEAVRKETNKEPNKSVNPDEVVAMGAAIQGGVITGDVKDV VLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSKSQVFSTAADNQPAVDIHVLQGERPMAA DNKTLGRFQLTDIPAAPRGVPQIEVSFDIDKNGIVNVRAKDLGTQKEQTITIKSSSGLSD DEIERMVKDAEANAEADKQRKEEVDLRNDADALLFTVDKTLKELEGKVDAEEVKKAEDAR DELKAAIEANDIEQMKAKRDSLNEIVQNLTVKLYEQAAQQQAQENPEAAQGGADDVVDAD FEEVNGDDK >gi|307679287|gb|GL456440.1| GENE 236 231608 - 231730 116 40 aa, chain + ## HITS:1 COG:no KEGG:EF1309 NR:ns ## KEGG: EF1309 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 40 1 40 40 62 100.0 5e-09 MKELWYDYNDVKQAENTYSQLVTLIQGVTDNPTRETESNR >gi|307679287|gb|GL456440.1| GENE 237 231785 - 232954 1616 389 aa, chain + ## HITS:1 COG:L0272 KEGG:ns NR:ns ## COG: L0272 COG0484 # Protein_GI_number: 15674206 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Lactococcus lactis # 6 380 5 379 379 474 71.0 1e-133 MATKRDYYEVLGLAKGASDDEIKKAYRKLSKKYHPDINKEADAEEKFKEVSEAYEVLSDP QKKAAYDQYGHAGTDPNYGGGAGGFGGFGGGGFSSSGFGGFEDIFDSFFGGGGGRSVDPN APRQGADLQYTIQLKFEEAIFGVEKEIKYNREDTCATCGGNGAKPGTHPETCHKCHGSGT INVERQTPLGRMMSRQTCDVCHGTGKEIKEPCPTCHGTGHEKKAHTVKVNVPAGVEDGQQ MRLANQGEAGTNGGPYGDLYVVFRVEDSDIFDRDGAEIYYDLPVSFVQAALGDEVTVPTV HGDVKLKIPAGTQTGTNFRLRGKGAPRLRGGGNGDQHVKVKLITPKNLNEEQKDALRAFA KAGGQNVTEQQEEGFFDKMKDAFGGKKKK >gi|307679287|gb|GL456440.1| GENE 238 233059 - 233736 509 225 aa, chain + ## HITS:1 COG:SP1989 KEGG:ns NR:ns ## COG: SP1989 COG1396 # Protein_GI_number: 15901812 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 5 168 3 165 299 117 39.0 1e-26 MVLDIGKNIQMLRCKKGLSRESLCEDESKLSVRQLTRIENENANTTISVLNFIAKQLNVA VVNLIEQKSELPRDYLKLKHKVFKTYPVIGSLERLEYKEGILELIYEKYFFDLPLEEQLT IELESSIISTVVTKNVDYMENLLKNNFKRLIEPEVYGINELLLSKIYFEMLHSYGWNEGE FSKILKKLICSINYLYDLELVILDGVFTSVASICFRKKDMRIYTI >gi|307679287|gb|GL456440.1| GENE 239 233799 - 233960 162 53 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315169992|gb|EFU14009.1| ## NR: gi|315169992|gb|EFU14009.1| conserved hypothetical protein [Enterococcus faecalis TX1342] # 1 53 248 300 300 93 100.0 6e-18 MLEGKYEVVVNKNLGKADNKYLTAINIAELLSDYLLKEKILDEWEKDKKIIMP >gi|307679287|gb|GL456440.1| GENE 240 234130 - 234273 156 47 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKMSEISMVEKKVMENTKSKVKKEVSNLSKVYSCCAKTQRQVNIHI >gi|307679287|gb|GL456440.1| GENE 241 234336 - 234866 407 176 aa, chain + ## HITS:1 COG:RC0629 KEGG:ns NR:ns ## COG: RC0629 COG0466 # Protein_GI_number: 15892552 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent Lon protease, bacterial type # Organism: Rickettsia conorii # 29 149 628 746 779 61 36.0 7e-10 MFYVPAISEDRFVEYFEIQIAQSDTTVITGLVGSQIKDSVFIAKTLLKNNKQKFGLNEIK DFHIHFTNNDIFKDGPSASLGIFMAILYYQKYHTKMKLINSDFTFLVTGDVDLRGNVKEI GGLKEKRKFFRKENFSLFVIPKEGNEVLRYSDELSCDNIYDTLSIIEKRASHVEKI >gi|307679287|gb|GL456440.1| GENE 242 234850 - 235365 190 171 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307291297|ref|ZP_07571181.1| ## NR: gi|307291297|ref|ZP_07571181.1| hypothetical protein HMPREF9509_01603 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9509_01603 [Enterococcus faecalis TX0411] conserved hypothetical protein [Enterococcus faecalis TX4000] # 1 171 1 171 171 278 100.0 1e-73 MLKKSNYIFVERGKETVRIINYFSLTVFEVPYQLWNRIDDWVKYDLELVEKLVANGILVQ KKYKEENYLEYIYNSRFFENNYFIKIENINDLKELNKICKTYNLYKNICIEMTFETDGYH FENFNLFIRNSSTLKLKNNKNFFVKKYNDCKQIYDYPEELLFFLVCFLHCK >gi|307679287|gb|GL456440.1| GENE 243 235492 - 236733 540 413 aa, chain + ## HITS:1 COG:TM1325 KEGG:ns NR:ns ## COG: TM1325 COG0641 # Protein_GI_number: 15644078 # Func_class: R General function prediction only # Function: Arylsulfatase regulator (Fe-S oxidoreductase) # Organism: Thermotoga maritima # 13 404 10 430 454 134 27.0 2e-31 MERLSKYVVKTRINKSQTALYNMLTKQHMLIDNENRDSMYPELEHQFYMNKTCKSDKEEL LNPVRNSYLFSDKVARYVVHLNYDCNLKCSYCYQNVIPEKEVMTEVTVNEVVNFINVSVN DIQPEQVDICFIGGEPMLHSKSIENIMKTLSVPRERTHFNMVTNGTIMGRKYQRLYDLGL KELMITLDGPRLIHDNFRVSKHGSGSFDKILENIALLNEKYPDINIQINCNLNAENVDSI PELIQQLKVQNITYPLIFSDVIDTKDEQYEYTLKEDTHWYEVHKIALEEGYTYEPFYRDI FLGCSMFQKNNFIIGANGYLYSCIEAVGLKQFQQVHVREYGEFMFDFIRSQEINKNESLE DCIECKFLPVCDGGCYYKRFSKTFKCPKNSFESNSIPLVHEFSERMYLNGRSD >gi|307679287|gb|GL456440.1| GENE 244 236717 - 236971 249 84 aa, chain + ## HITS:1 COG:lin1677 KEGG:ns NR:ns ## COG: lin1677 COG1131 # Protein_GI_number: 16800745 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Listeria innocua # 2 65 3 66 306 64 48.0 4e-11 MEEVIKCQNLTKKFGQELIFEDLSFAINKGEIFVILGKNGAGKSTLIKILLGMIYATKGE VKYAGIKKIILLSYIAKWEQFWNQ >gi|307679287|gb|GL456440.1| GENE 245 236947 - 237603 605 218 aa, chain + ## HITS:1 COG:SP1426 KEGG:ns NR:ns ## COG: SP1426 COG1131 # Protein_GI_number: 15901279 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Streptococcus pneumoniae TIGR4 # 16 135 88 205 244 94 40.0 2e-19 MGAVLESVDNIYPFLSGIENIRYFLSLSGKSYKKEKQKVHQWVQRFQLQQAIHKPAGAYS RGMQQKLAIICALVKETDILFLDEPTLGLDFQSNKEIMAIIEELAHQEQKTIVLTSHQAD VLETLSDRVLLLNNGKQLYYGSYSTFIKQFESDMYEIVFNFLGEPSKEIILEGEETAQLE LQNLIKQGYQINRFEKRKKNIEEILREVYHENSTSIRW >gi|307679287|gb|GL456440.1| GENE 246 237575 - 238330 714 251 aa, chain + ## HITS:1 COG:PH1848 KEGG:ns NR:ns ## COG: PH1848 COG0842 # Protein_GI_number: 14591595 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Pyrococcus horikoshii # 22 214 5 217 255 62 23.0 9e-10 MKILQAFVGELRKYLFEIKMYYPDQIVSTVITIFIFIGMGLMSGNTSESSFYIGFVYWFL LSSLIGEASVSTSSEKQMGVLEQLMIQPIGLKKLILIRSSIWGVVNLVKVLVALIILKVI LNLTLGFHMLLVPIFFIASLGILGFTMLLCGLTLKFTKTASFESIISYGIMILSGAIFPL GLLPNWLQKIGQLLPITKGIKISQTLIQGEAISSGEYLLFIIISVSYLTLGILAFDSIYD KSKSAGVDRRY >gi|307679287|gb|GL456440.1| GENE 247 238463 - 239197 890 244 aa, chain + ## HITS:1 COG:lin0658 KEGG:ns NR:ns ## COG: lin0658 COG0639 # Protein_GI_number: 16799733 # Func_class: T Signal transduction mechanisms # Function: Diadenosine tetraphosphatase and related serine/threonine protein phosphatases # Organism: Listeria innocua # 1 235 1 235 235 192 40.0 4e-49 MKPYVYVISDIHGQADLFDALLTDYDPVEHQLVLIGDLNDRGPHSKACFLKGKELVEQHG AVYLRGNHEEYFLQFLQNPEDWFTGYVRNGGKETIESLLHPGATAEYSPTEMALMIRSRY PELIDFLTKRPLYFEWEHYLFVHAGVDLTMEDWRQTAPKDFLWIREPFHQGKNNTGKTIV FGHTITPMLHGDMQTTDLWQSDGKIGIDGGAIFGGSVHGVIFNEKGIVQDIEYQKRTPAW QPEF >gi|307679287|gb|GL456440.1| GENE 248 239295 - 241487 195 730 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229231694|ref|ZP_04356122.1| SSU ribosomal protein S1P [Cryptobacterium curtum DSM 15641] # 651 720 204 272 403 79 60 2e-13 MAEAYNEEVVALLQKELTTYRSKQITTVLTLLNEGNTVPFIARYRKEMTGSLDEVQIREI EERYHYLQNLKKRKEEVLRLIEEQGKLTKELKTDIQKAVKMQQVEDLYRPYKQKRRTKAT IAKEKGLEPLADWLLSLPENADILAKAATFINEEKEVATAEIALQGAHEILAERISDEPK YRTWLRDYMVKHAQYVSVVKDEEKDEKRTYEMYYDFAEPVSKMVPHRVLATNRGEKEDIL KVSLVADETKINDYFQRQLIGKQATSFAAPYIEAAYLDSYKRFIGPAIEREIRNELTEKA DEQAIAIFGENLRNLLLQSPLKGKVVLGFDPAYRTGCKLAVVDETGKVLAIQVIYPHKPA TAAKREAAGPAFKKIIEDYQVDMVAIGNGTASRESELFVAEQLKAVKRDVFYVIVNEAGA SVYSASEVARKEFPDLQVEERSAVSIARRLQDPLAELVKIDPKAVGVGQYQHDVSQKRLA EQLDFVVETAVNQVGVDVNTASAQLLQHISGLNKTTAQNLVTYRDENGVFTARNQVKKVP RLGPKAFEQAIGFLRIPNGKNVLDNTGIHPESYPVAQAILEKAEIASKELGTAEAIEKLK QLPVNQLATELEVGSETLTDIIASLIQPGRDMRDEMSAPLLRKDVLTMEDLKPGMEMQGT VRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDLKKGRISL TMLPRADRKE >gi|307679287|gb|GL456440.1| GENE 249 241490 - 241975 258 161 aa, chain + ## HITS:1 COG:SPy0581 KEGG:ns NR:ns ## COG: SPy0581 COG3091 # Protein_GI_number: 15674669 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 14 152 3 139 145 146 50.0 2e-35 MKESQPVLMTDQALQTLVEKISIVFFQKPFLHQATFNRRLKTTGGRYHLASHHLDFNPTV FLKYGQEELEKVIKHELCHYHLHLAGKGYQHKDKDFKELLAKTGGARYAPPLVERKKAVF HQYQCQSCGEVILRKRRIDTTRYVCGKCHGRLSWQAKKEQI >gi|307679287|gb|GL456440.1| GENE 250 242374 - 243591 1018 405 aa, chain + ## HITS:1 COG:L162604 KEGG:ns NR:ns ## COG: L162604 COG0436 # Protein_GI_number: 15672142 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Lactococcus lactis # 1 404 1 404 404 670 76.0 0 MRNFKKSDKLNNVSYDVRGPVLEEAERMQEEGIRILKLNTGNPAPFGFDAPNEIVRDMIV NVRDSEGYSDSKGIFSARKAIEQYCQLKKFPNVTINDIYTGNGVSELITMCMQGLLNNGD EVLVPMPDYPLWTASVSLAGGTPVHYICDEQAEWYPDIDDIKSKITSNTKAIVIINPNNP TGALYPKELLLEIVEVARQNDLIIYSDEIYDRLVMDGLVHVPIATLAPDLFVVTLNGLSK SHRVAGFRCGWMVLSGDKSRVKGYIEGLNMLASMRLCSNVLSQQIIQTALGGYQSVDDLL LPGGRIYEQREFIYNAINDIPGLSAVKPKAAFYIFPKIDTAKFDIYDDEKFVLDFLHKHH ILLVHGGGFNWQQPDHFRIVYLPKMEDLKTTADKMREFLSTYKQK >gi|307679287|gb|GL456440.1| GENE 251 243657 - 243833 284 58 aa, chain - ## HITS:1 COG:no KEGG:EF1315 NR:ns ## KEGG: EF1315 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 58 1 58 58 93 100.0 3e-18 MAEEKKVHFIWEKTNYSGFVEKEYENSYLIVVANPSPDMEEKYTNRMIISKKACETAE >gi|307679287|gb|GL456440.1| GENE 252 244011 - 244838 909 275 aa, chain + ## HITS:1 COG:no KEGG:EF1316 NR:ns ## KEGG: EF1316 # Name: not_defined # Def: Cro/CI family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 275 1 275 275 493 100.0 1e-138 MNSLGAVIKEIRKNRKLTQKMLSEDICSQSVLSRIENNEELPNVLVMQQLCDRLGVTVDQ IMRYKSGDVHVVTYSFEKMAEYFRHKKYQLLLNYLKENRIEEQLYLDTDWQKYYYYLGSC ELFVLNDYEKAIASLRKGLSFTYKADKLNVSDLEIQLISCLGATYGYMGNRVEAERFLSL SIHYFNQLPNERSNAELTKIFFNYADFLFKNYTEKDAEIYVDQGITWARKKNSYYYLSEL LNLKYLVLMRKNKHEEAERYLNLAQQMKNVESGNL >gi|307679287|gb|GL456440.1| GENE 253 244939 - 246087 1480 382 aa, chain + ## HITS:1 COG:SPy1694 KEGG:ns NR:ns ## COG: SPy1694 COG1820 # Protein_GI_number: 15675552 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Streptococcus pyogenes M1 GAS # 1 382 1 382 382 484 63.0 1e-137 MKTFIFADKFFLKSDVKGPGYLEITDGIFGNYTKDEPQGDVKIIREEGKWIAPGLVDTHI HGYMNHDVMDNDAEGIKVMSEGLLSCGVTSFLPTTLTSSKERLTDVARTIGQVYQEVPGA KIQGIYFEGPFFTEEHKGAQNPSYFGDPDLDTFHEWQEASGGIIKKIALAPERNGVKEFV ETVTDEGVVVALGHSNATLEEADVAVEAGASVFVHAYNGMRGLNHREPGMVGALLTLQHV FSELICDGHHVHPQAAEVLMEKAGHDHVALITDCMMAGGMPDGNYNLGEFPVVVAEGTAR LDTGNLAGSILKLKEAIKNVVDWGIATPAQAIMMASLVPAISCKIDDQCGMIANGRDADF IVLEPTMELAATYLDGVERYRA >gi|307679287|gb|GL456440.1| GENE 254 246129 - 246515 638 128 aa, chain - ## HITS:1 COG:no KEGG:EF1318 NR:ns ## KEGG: EF1318 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 128 1 128 128 197 100.0 1e-49 MDFEQLKETLPDAKPQTFLQAILSQPQEEDAELTFSEEIDEQFVENCKFLASPETISETD VEHWREQEFLVVAQSLDGDYLAGTLEQTFVIPSSLYKEDIEQFDKQLIDFFIAYENKEIT SAILPKEL >gi|307679287|gb|GL456440.1| GENE 255 246529 - 247188 641 219 aa, chain - ## HITS:1 COG:no KEGG:EF1319 NR:ns ## KEGG: EF1319 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 219 1 219 219 380 99.0 1e-104 MANRKKKPPFNSTIMLIGALIILILGAVGVKVPDALQDLFNVQPQTTTPSSTPAPKGDNP GPIENGKATFSAEELKDNSNGWITYHSLDRLKRATGADALLKPAMVNTGTSANKDIRPAG FISGKANHSRGHLIGRQMGGSGDDPRNLTTLYQNPVNTPYMTKYENQIRAALDRGETVRY RVTPVYNGNDLLAEKIILEAKSLKTNSPIDFSVTILNKQ >gi|307679287|gb|GL456440.1| GENE 256 247349 - 248050 344 233 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 4 218 2 219 245 137 37 8e-31 MAYIEVKNEYKRYQMGETTITANDGISFEVEKGEVAVILGPSGAGKSTVLNILGGMDSCD EGEIIIDGTDIAQFSEKQLTTYRRNDVGFVFQFYNLVPNLTAKENVELASQIVADALDST NVLQSVGLGERLDNFPAQLSGGEQQRVTIARAIAKKPKLLLCDEPTGALDYETGKQILTI LQNTARETGTTVLIITHNSAIAEMADRVIRINDAKVREMTVNDQPKLVAEIEW >gi|307679287|gb|GL456440.1| GENE 257 248060 - 250696 2352 878 aa, chain + ## HITS:1 COG:L111162 KEGG:ns NR:ns ## COG: L111162 COG0577 # Protein_GI_number: 15673086 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 8 876 7 894 896 580 37.0 1e-165 MKKTALIKTSLREIRQSTTRFLSIMGIIFLGVMVFVGLKATGPDMIKTANNYYQKEQLPD ARIISTMGLEKKDLTTLQSLKDVEIVVPRYTIDATIGPQNNAVKLFGYRKNQAGSVNYQV VDGRLPKQTNEIALDTLAKTRYDYKMGDKITLNDAAIKEKGLTQTHFTVVGFINSPEYID NTSRGTTTVGSGTLNFFGVVSEKAFDSQRYPELLISFRSLKHQNTYSPDYEKKREQALNQ VKEALKNRPEEQVAALRDSAQPDINQGRQALETGKQALAQLEQQPGIPAEMLEKQKDELA KQEQLLAEKETELANLKAPTYYYFTREDNPGFSEYQDNADRISSLATLFPLFFFLIAALV SLTTMTRMVEEKRMEIGSLKALGYRNREIASIFITYATVASLTGALLGLAVGYYLFPKII FDAYGQMYNIPDLVTPWYLNYSLWGIIVALACTVGAALVTLRIDLLSTPATLLRPKAPKA GQRILLERIRPLWQRMSFIQKVTARNLFRYKRRMLMTVIGIAGCMGLLIVGFGLRDSIVD VATIQFNKIWHYQAVVTFKEQTTAEETKEYQETLRKLDGLNKTIPLYSEIFKTKGKGAPT QNITLYVPQDPSKMAEFQLFNDRVTGEKYSLNDDGVIINEKLAKLFGYKVGDQLNLENSD NQTYHVKIAAIAENYTGHFVYMTPKLYQTMTKQKPEYNTEFLLFDKKLSSKQETSIGEVL TKQPKVLNITFLTAMKGSFDDMLKSLDIVIWVLIAVSGSLALIVLYNLTNINVSERIREL STIKVLGFYDREVTTYVYRENIILTFIGIIVGCFFGKILHQYILATVEVDLIMFSPIIHW PSYLYSAVITMCFTLFVMVIMHRKLKKINMIEALKSNE >gi|307679287|gb|GL456440.1| GENE 258 250889 - 251413 606 174 aa, chain + ## HITS:1 COG:no KEGG:EF1322 NR:ns ## KEGG: EF1322 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 174 1 174 174 305 100.0 5e-82 MLEGLPLETVYFYALVGSAVLAFLLIIFGDVFNFDGPVDPMLIIPWIAFTSLFGYLGEEL TAVNSWLILIVSGILSTIIVFFLNFYVLVPLKNSEATISISEKDMEGRVATVITPIPVRG MGEIQLKSVTGSLSRPAAFYVPQEVAAPRGSEVLIIELKERVCYVIPYEGSLKI >gi|307679287|gb|GL456440.1| GENE 259 251430 - 252899 2165 489 aa, chain + ## HITS:1 COG:BS_yuaG KEGG:ns NR:ns ## COG: BS_yuaG COG2268 # Protein_GI_number: 16080153 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 473 3 486 509 532 68.0 1e-151 MGILLPIIIAVLVLLMLLIVFVSKYQTAKPDEALIISGSYLGSKNVHVDEGGNKIKIVRG GGAFVLPVFQRSNRISLLSSKLDVSTPEVYTEQGVPVMCDGTSIIKIGSSVEEIATAAEQ FLGKTTEELENEAREVLEGHLRSILGSMTVEEIYQNRDKFSQSVQEVASVDLAKMGLVIV SFTIKEVRDKNGYLDSLGKPRIAQVKRDADIAEAEALKETRIKKAEAEKESQQAELQRQT EIAEASKEKELKLALYKQEQDIAKAKADQAYNLESARAQQHVVEQEMEVKVVERQKQIEL EEKEITRREKQYDSEVKKKADADRYAREQEALAQKAREVAEAEAERFKVEALAEAEANKT RLTGQAQAEAILARGAAEAEAKQKIADAFKEYGEAAVLSMVMEMLPQLMKEAAQPLGNID KISVVDTGAGGENSGANRITNYATNLLAGTQETLKETTGLDVKELIENFSKKGTSNSVNY HATEGSEKE >gi|307679287|gb|GL456440.1| GENE 260 253046 - 253279 377 77 aa, chain + ## HITS:1 COG:no KEGG:EF1324 NR:ns ## KEGG: EF1324 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 77 1 77 77 119 100.0 3e-26 MSKKNKDIEVRVEEEKAQYNGANVLMNKLFIGKKEIGRVIPQNDKKFIIEIDGKQEGTAK NLDEAFETIIRQWNLSE >gi|307679287|gb|GL456440.1| GENE 261 253692 - 253871 205 59 aa, chain + ## HITS:1 COG:no KEGG:EF1325 NR:ns ## KEGG: EF1325 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 59 1 59 59 92 98.0 4e-18 MNFKEKITEMVGNVYDLARDGKYDVKVDLIPRKKGNIKSGVKVTSSRNTAHNIKWRSKN >gi|307679287|gb|GL456440.1| GENE 262 253927 - 254535 569 202 aa, chain - ## HITS:1 COG:L108801 KEGG:ns NR:ns ## COG: L108801 COG1309 # Protein_GI_number: 15674221 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 202 1 202 204 198 48.0 6e-51 MAKKTDLRVQRTRKMIIEAFFKLVETKGYEAVTIQDIADEAMINRATFYAHFKDKQHLYD AIFTFTLSAFTAILDSQQLVNGNRVRVKHIEELLTQLYINIQENKSFFLTIMDNNFNEHF RKRLAEIIEEKYATIFSQLRITENDIDVPIDFVIEYMTSIFIGTLHWWITSETDMTPNHL AQLVIKLVGNGHLTVLGIELEK >gi|307679287|gb|GL456440.1| GENE 263 254714 - 256363 1543 549 aa, chain + ## HITS:1 COG:L104115_1 KEGG:ns NR:ns ## COG: L104115_1 COG1924 # Protein_GI_number: 15674220 # Func_class: I Lipid transport and metabolism # Function: Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) # Organism: Lactococcus lactis # 2 549 4 550 634 775 70.0 0 MVTRAGIDVGSTTVKLVFLNKQNQPIFTKYERHFSDVKAATERILKEGLARIGADQPVTM SITGSGGMGLAEVLGIPFVQEVIACTRTVETIIPETDVAIELGGEDAKITFFDGALEQRM NGSCAGGTGAFIDQMAVLLKTDANGVNELAKNYQTIYPIASRCGVFAKTDVQPLINEGAA KEDIAASIFQAVVNQTIAGLAAGRKIKGKVAFLGGPLFFMSELRKRFVETLAIQPEDVIF PEQPQLFVAMGAALYSEDAAECTLEELIQRLVNSQATDLQPSDTLPPLFNSAEDLADFRE RHAQAQAKEKPLSQHTGVTFLGIDAGSTTTKVTLIDEDGHLLFSFYGNNQGQPLETTMTV LKSLYQQLPEEVFIGKAAVTGYGEQLIKNALKVDIGEVETMAHYKAANHFQPGVDFILDI GGQDMKAMTIKNGVLSSIQLNEACSSGCGSFIETFAQSLKYNVKDFALAALESQAPVDLG SRCTVFMNSKVKQVQKEGASVGDISAGLSYSVIKNAIYKVIKVRRPEELGEKIVCQGGTF YNEAVLRAF >gi|307679287|gb|GL456440.1| GENE 264 256382 - 258961 2089 859 aa, chain + ## HITS:1 COG:L104115_3 KEGG:ns NR:ns ## COG: L104115_3 COG3581 # Protein_GI_number: 15674220 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 469 850 1 379 403 555 68.0 1e-157 MVRPSIAGLMGAYGAALIALDAYEIGEETTLLSLEELAAFTSEKEFTHCGLCENNCQLTV TVFSDGRQFITGNRCERGARIKIKREERKVNLVDYKYRKLFKYRPLRENKAFRGRLGIPR VLNMYENYPLWHTFFTDLGFRVELSPRSNKQIYEQGLETIPSDTVCYPAKMAHGHIQALI DAQVPIIFYPGVVFEQQETVEADNHFNCPIVQSYPDVIRNNVDAIREGQVDYRNPYLNLA NEAAVAKVLAENFADLGISLEEIQTALHHGYQELAAFKKEIQEKGEETLAMLTEKGQRGI VLSGRPYHLDPEINHGIAEVITQEGFHVLTEDSISHLGDVQNLRVVNQWVYHSRLYAAAK VVAKTKNLELVQLNSFGCGLDAVTTDQVEEIMDRSGKIYTVLKIDEGANLGAIRIRLRSL KAAVNEREKQQFVPHMQMEEPEKIVFTKQMKKTHTLLLPMLSPIHQSGLVDVALQASGYH VVCLPAQDKEAVNVGLKYVNNDACYPAIISIGQLVEALESGQYDLDNVSVLMTQTGGGCR ATNYIPLLRKALNDAGFSQVPVVSVSMGNKGVESNPGFKFTLPMIKRLVVAFLYGDLFER VVYRTRPYETEKGMVDQLHQDWLKRVEANVRNGSLTQFNHFMKKIIRTFDEIPLQEIKKP KVGVVGEILVKYSPTANNDIVRLLEEEGAEAVVPDIVGFMNYSLYNQIWKYENMGMSKQS KRLAEFTIKIIELVEKPMDKALRKSVRFDGIHSIYDMAADASKILSIGNHTGEGWFLTAE MIELLKHEVNNIVCMQPFGCLPNHIVGKGVVKELRRQYPQANIAAVDYDPGVSLVNQLNR IRLMMATANKLLKEENVKR >gi|307679287|gb|GL456440.1| GENE 265 259168 - 259875 931 235 aa, chain + ## HITS:1 COG:L0151 KEGG:ns NR:ns ## COG: L0151 COG2188 # Protein_GI_number: 15673419 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 3 235 4 235 235 264 56.0 1e-70 MVQNIPIYIQIHDKIKEDIEKGVWSIGDRLPSERELALKFDVSRMTLRQAIQTLADEGIL ERKIGSGTYVARKKVQETMTGTTSFTEITLSQNRVPSSRTVSYFVAKPSSSEMEKLQLGP EDSILRMERIRFADDIPICFEVASIPYSLVSQYGKSEITNSFYKTLEAKSGHKIGHSNQT ISAVQASEQIAEYLEIKRGDAILRVRQVSYFENGLPFEYVRTQYAGSRFEFYLEK >gi|307679287|gb|GL456440.1| GENE 266 260695 - 261126 327 143 aa, chain + ## HITS:1 COG:no KEGG:EF1337 NR:ns ## KEGG: EF1337 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 143 1 143 143 268 98.0 5e-71 MLQKYIEILTRDEVIFRKKPDGTEVNYFLFPEFEIHINSLPGKTVQGWHKHHEIEEVLLV QSGKVKIEELENQQIVSRICAEGELIRMHNSLHRISNPDTLSASFTVFRFVPQGQNQQEC IKNDKEEFSDAAVQRLLKINDSL >gi|307679287|gb|GL456440.1| GENE 267 261295 - 262209 630 304 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 1 303 1 306 306 247 43 6e-64 MYDVIIIGAGPAGMTAALYASRSNLSVLMIERGAPGGQMNNTAEVENYPGFDSIMGPELA YKMYENVEKFGTENAYGIVMGIEDHGSYKEVICDDKSYEAKAVIIATGCEHRKLGVKGEE EFAGRGVSYCAVCDGAFFKNKRLVVVGGGDSAVEEAIYLTQFASEVVIVHRRDELRAQKI IQDRAFANEKISFVWDTVVEEIVGNEMVVTGVKARNVKTDEVSEIEANGVFIYVGLDPLT EPFKKAGITNEAGWIETDQEMRTKIPGVYAIGDVREKTLRQITTAVGEGGIAGQQVFNYI EELK >gi|307679287|gb|GL456440.1| GENE 268 262252 - 262713 661 153 aa, chain - ## HITS:1 COG:no KEGG:EF1339 NR:ns ## KEGG: EF1339 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 153 1 153 153 291 100.0 8e-78 MVYTVDFKEVATIGLESSPVAPALAGLRANEARYFWNKYKHRFTTVPASEAPETLAWIEK ILLERELHFPYKPLEISSFTLDGIKMAYVFYENGLAVNVMYTLAEEGKRAVGFKLSDGMA IPAEFEGKFKFARQKSKLAGTIRGSYFVIKGTY >gi|307679287|gb|GL456440.1| GENE 269 262910 - 263410 685 166 aa, chain - ## HITS:1 COG:no KEGG:EF1340 NR:ns ## KEGG: EF1340 # Name: not_defined # Def: pheromone cAM373 precursor lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 166 1 166 166 288 99.0 4e-77 MLKKPFLLFFSLLGAIFILASCGIGKDAVTDTKYKVSLQQAAEIYEKEAGNSKPLVNVQF DTEPASDYSYIFTNETETLYVNPETGKVTKNTEANQLGENETAFSAAEVKELGAVNDVLA KAKKEVGGLSPRILTWKLTKNNNKLVYTVDVKTTTADEKVTLDANK >gi|307679287|gb|GL456440.1| GENE 270 263409 - 263492 93 27 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKLPRFFLLSIHNHLVYGGFIKITNKK >gi|307679287|gb|GL456440.1| GENE 271 263529 - 264569 1208 346 aa, chain - ## HITS:1 COG:L119891_2 KEGG:ns NR:ns ## COG: L119891_2 COG0577 # Protein_GI_number: 15672696 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 210 346 238 374 374 97 40.0 2e-20 MLEGNYPEKETDVVLIVDSNNTTNINALKNLGFDVKDNQKIAFSDIVGTKMKLANNNAFY TKLPTGNFIPNQDLQAVYDNPENTELTISGILRIKDSSTMNLLAPGIAYSDALSTNMIAK NKTSDIVKAQEASNTNVMTNETLDASAKENLLSYLGANEIPSSIMIYPNDFKSKDKILDY LDAYNKGKDKKDQIIYSDLAGTMTRLTGGLMDAITYVLIAFAGISLVTSMIMIGIITYTS VIERTKEIGILKALGARKKDITRVFDAETAILGVASGILGVVIAFLATFPINAVLYNLTD LENVATLNPIHGIILIVISTILTMIGGHIPARMAAKKDAAVALRAE >gi|307679287|gb|GL456440.1| GENE 272 264562 - 265869 1339 435 aa, chain - ## HITS:1 COG:L119891_1 KEGG:ns NR:ns ## COG: L119891_1 COG1136 # Protein_GI_number: 15672696 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Lactococcus lactis # 1 287 3 289 290 230 42.0 5e-60 MLELKEIKKYYTVGGTTTKALDGVSVAFRKQEFVAILGPSGSGKTTMLNVIGGLDNYDSG DLIINGKSTKNFKEADWDAYRNNSIGFIFQSYNLISHQGILDNVELGMTLSGISKAERRQ KAEDALIRVGLKDHIHKKPSQLSGGQMQRVAIARALANDPDILLCDEPTGALDSETSLQI MALIQELSKEKLVIMVTHNPELAHEYADRIIEFSDGQIRHDSRPHIEHEKKEPFELKRTK MKFTTALRLSFNNIRTKKGRTFLTAFASSIGIISIAIVLSLSTGFQKQIDKTQSETLAQF PITISKIATDQDPESFNNQDKKGTFPKEKEVTAKISDADRAQHTNLIDQKFIDYVNHIDP ELSNNIGYTRLVNMNLLREINGKAQAVKFSNDAPDGQSNAMASMMAAQTGVGVSAFPKQL ENGKKQFLKRQLLVA >gi|307679287|gb|GL456440.1| GENE 273 266015 - 266503 450 162 aa, chain + ## HITS:1 COG:no KEGG:EF1342 NR:ns ## KEGG: EF1342 # Name: not_defined # Def: MarR family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 162 1 162 162 252 100.0 3e-66 MDKEKHSSNLDISVFTEIFSYMSQLLFKDLDLEDLKLTKLDMLILLIVATNEGISMTELA NQVGTSKVQVSRSIAGLEERAIVQRRHNQENRRVVNVYTTKEGEKLFKQKENQVKQQLSE TLSVLSLEDYQEVNQHFLAVMKILSNYQALRRKTCKENNAKK >gi|307679287|gb|GL456440.1| GENE 274 266541 - 267404 708 287 aa, chain - ## HITS:1 COG:SPy1296 KEGG:ns NR:ns ## COG: SPy1296 COG3833 # Protein_GI_number: 15675249 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type maltose transport systems, permease component # Organism: Streptococcus pyogenes M1 GAS # 8 286 2 278 278 327 67.0 1e-89 MAKAKSYQKKQRTALTSVYIILTILAVFWMFPIVWIILTSFRGEGGAFVPYIIPKTFTLE NYKVLLTNQTGNFPFVRWFLNTLFVSIASCLLSTFITIAMAYALSRLRFRLRKPFLKVAL VLNMFPGFMSMIAVYYILKALNLTESLFALILVYSAGSALGFYIAKGFFDTIPMALDESA MIDGANKWQIFTKITLPLSKPIIVYTSLTAFMGPWMDFIFAKVIMGDKVENYTVAIGLFS MMTKSTANSLFMAFTAGCVLIAIPITILFILMQRFYVEGVTSGSVKG >gi|307679287|gb|GL456440.1| GENE 275 267408 - 268751 946 447 aa, chain - ## HITS:1 COG:SPy1295 KEGG:ns NR:ns ## COG: SPy1295 COG1175 # Protein_GI_number: 15675248 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Streptococcus pyogenes M1 GAS # 10 447 11 450 453 541 67.0 1e-154 MFKKKKAQTSFREVFKKGDFATKLSFLVMGAANFANKQWLKGIIFLTAEIGFIYWLIRNG FHALMMLGTLGTQQQGLVYDDSLGIEVLKEGDNSMLLLLFGIAAILVCLSLIILYVINLK SARHLYELKTAGKKIPTTMDDLRSLLNERFHATLMTIPLLGVLFFTILPLLYMISIAFTN YDHNHLPPKNLFTWVGLANLGNVITGDMASTFFPVLGWTLIWAVFATATCFFFGIILALL INTKGLKYKAFWRTIFVITMAVPPFVSLLIMRNLLNGSGPINALLLNWGLIDSSIPFLTD PNWAKLTIIVVNMWIGIPATMLISTGIIQNLPEDQIEAARIDGANKWQIFKSITFPQILF VMTPALIQQFIGNINNFNVIYLLTGGGPANSNFYGAGSTDLLVTWLYKLTVDTMDYNLAS VIGILIFILSAVFSLIAYTRTNSFKEA >gi|307679287|gb|GL456440.1| GENE 276 268837 - 270087 1665 416 aa, chain - ## HITS:1 COG:L128695 KEGG:ns NR:ns ## COG: L128695 COG2182 # Protein_GI_number: 15673665 # Func_class: G Carbohydrate transport and metabolism # Function: Maltose-binding periplasmic proteins/domains # Organism: Lactococcus lactis # 4 415 3 410 410 281 41.0 2e-75 MKANWKKILMGGILLSASAVLLTACGGAEKTKAENESGSANKAAGDVKLWVDTEYMGVFK KVVADFEKENPDIKVNLTAGNSADAKKDIAKDPKAAADVFMMPHDQIGQMAEAGLIYPNT KYEKEVKENNIDSAVEGVTWKDKVYAYPYAVESQVLYYNKDTYSPKEIKTWKSLTEKGKI GTNFGEDGANYIFGPLFMSNGDYLYGENGEDPKGTNFNNQQGIEVLQWIADQKNNPGVIQ SNTEALSNLGSGKTDAFLSGPWSKNDVEKALGDKMGAAAYPTIDFGNGEKQMKAFLGVRS FAVNQQTQAPLAAMTLANYLTSEKAQMTYFKEIGFVPSNKKLQTNEEITQDTVAKAILEM AQPTHSVVMPKIPEIVSFWPAMDAVINDTYKGNIKPADYQAKLDKLVQDTSKEAKE >gi|307679287|gb|GL456440.1| GENE 277 270272 - 270346 87 24 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQSFALKCVRVLENTRKATIKGEN >gi|307679287|gb|GL456440.1| GENE 278 270347 - 272113 1670 588 aa, chain + ## HITS:1 COG:L128694 KEGG:ns NR:ns ## COG: L128694 COG0366 # Protein_GI_number: 15673664 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Lactococcus lactis # 1 587 1 584 584 709 57.0 0 MNTAAIYHRPESEFAYLYTEETMHIRLRTAKGDIASVQLVQGDPYLLGKEKWYQQSLTME KLVSTELYDYWFIALSAKFKRLSYAFTLVGTDGLRAFYGEHGIYPLEEKYLAMANNYFRM PYFHEIDRFKAPEWVKETVWYQIFPERFANGDPANDPEGTLPWGSKRPDRQDFFGGDLQG VLDHLDYIEDLGVNGLYFCPIFEAFSNHKYDTIDYLKIDPAFGDGATFKRLVEECHRRGI KIMLDAVFNHMGDTSPQWQDVLKNGQDSIYADWFHVNEFPASYEESADFEEASNITYDTF AFTPHMPKLNTANPEVQAYLLEIARYWIEEYDIDAWRLDVANEVDHAFWKKFRQTCDDAK EDFYILGEIWHSSQSWLQGDEFHAVMNYAYTDAIMGYFVKQELSLEKMLSEMNNQLMLYR QQTNQMQFNVLDSHDTPRLLHETKEDKELMRQVLAFTYIQPGVPCLYYGDEIGMTGDMDP DCRRCMVWEENQQDLDLKEFVKSLIALRKKYAAVFSGGTIDWTGTSFETGLIRLACRLDE QTIYGIFNTGQETQFVDRTDREVLLSSSIETASEQIMVLPKGFLLYQA >gi|307679287|gb|GL456440.1| GENE 279 272141 - 273766 1525 541 aa, chain + ## HITS:1 COG:SP0342 KEGG:ns NR:ns ## COG: SP0342 COG0366 # Protein_GI_number: 15900272 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Streptococcus pneumoniae TIGR4 # 1 539 1 534 535 686 62.0 0 MEKHWWQEVVVYQIYPRSFKDSNGDGIGDLPGIIEKLDYLETLGIGAIWLSPVYQSPNDD NGYDISDYEAIMTEFGTMADMDRLIEEAKKRKIEIIMDLVVNHTSDEHRWFIEAKKSKEN PYRDYYVWADPASDGGAPNRLKSAFSGSAWTFDEASGQYYLHLFSKKQPDLNWENQQMRQ SVYEMMNFWIDKGIGGFRLDVIDLVGKIPGEEITANGPHLHRYLQEMNAATFGGKELLTV GETWGATPEIAKMYSSPERHELSMIFQFEHMSLDQQPGKEKWDLQPMEVAKLKQVFAKWQ TELGNDGWNSLFWNNHDLPRMISRWGNDQEYWLESSKLFAILLHMMKGTPYIYQGEEIGM TNTPITDIREARDIETINMYHEYLEKGYSKEEILLKINTKGRDNARRPMQWTAEKNAGFT TGTPWIDVNSNYQTINVAAALADKNSLFYTYQEMIRLRKEHPLIVWGDFELLETVEEVIS FYRTYGEERWLVVTNFSDKVQPFSADVHVEQVMIENMPTDVTALADYSLAPWQAFVVKVS Q >gi|307679287|gb|GL456440.1| GENE 280 273768 - 275381 1604 537 aa, chain + ## HITS:1 COG:L128691 KEGG:ns NR:ns ## COG: L128691 COG0366 # Protein_GI_number: 15673660 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Lactococcus lactis # 9 537 13 544 545 612 56.0 1e-175 MEQWWKNAVGYQIYPRSFKDSNGDGIGDLQGIIEKLPYLKELGVDFLWLNPIYTSPNVDN GYDIADYQGIQPEFGTMEDFQELLDQAHQLGLKIILDLVVNHTSDQHPWFIEAKKSLDNP YREYYLWADATPDRMPNEWQSFFGGSTWTYDAGTKQAYFHVFAKEQPDLNWKNPKVREEI YAMIRWWLDLGIDGFRLDAISHIQKELWDFKITTNPWAPFMNVKGIEDYMLDLKAIFAEY DIMTVGEASGVSSKKAVEWTNDAGYLNMIFELEHNVREGKPGEERLNILGYKKVMARWQK HLGTEGWNALYVENHDNPRINSILGNETSHSAKAIGTIALLLRGTPFIYQGQEIGMVNYP FQQIDELDAKDSHNHYRLLIESGYDAKQALKEVAHWTRDHSRTPMQWTSQEASSFTSGHP WLAIHPNFKEINVADQETDAQSVLNYYKKLIALRKDNPVFTDGQFELLAPNHPSVFAFLR KTTEATALVIVNLSGEKCQFDLPNKLLGRKWQQLLGNQDFTVKKRMQLAPYQAGVFQ >gi|307679287|gb|GL456440.1| GENE 281 275552 - 276133 688 193 aa, chain + ## HITS:1 COG:L85237 KEGG:ns NR:ns ## COG: L85237 COG3548 # Protein_GI_number: 15672844 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Lactococcus lactis # 1 187 1 184 188 129 38.0 3e-30 MPKTRVEAFTDAVIAIILTLLILELKIPEKADWSALTQSGHKIIIYLISFVTLLIYWNNH HHLFQSVRKIDGRVLWMNNLLILTLTFFPFVTGWVGEHPFSWPPQALYGLVVLGADVAYY LVVRALIQANGPKSEVQRLFGHYPKLTLSIVLNIIALIVGKLVAPIAVLIIDTIVLVMWF IPERKAEIKEILK >gi|307679287|gb|GL456440.1| GENE 282 276609 - 279218 2742 869 aa, chain + ## HITS:1 COG:lin2836 KEGG:ns NR:ns ## COG: lin2836 COG0474 # Protein_GI_number: 16801896 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Listeria innocua # 17 869 13 856 856 898 54.0 0 MNKKTMDMRKATKDQELRKLALLSERELMMELRTSEKGLSNEDAEKRLEEFGPNEVSAQK PTPAIILFLSAFKDPFVYVLALLMVVSTLTKDFEAAIVMGVMILASVLIAFIQEYRSQKA SLDLKELIENTAAVTREGITKEIPMDEIVPGDIVTLATGDMIPADAVLIWTKDLFVNQSS LTGESMPVEKFVDAGVDRQQTEVSALDMQDLVFMGTDVLSGQGKAIILKTGQHTFFGDIA KNATTQRGKTSFDLGLAKVSKFLLRMVMILFPIVFLINGLTKGAWGEAFFFAIAVAVGLT PEMLPMIVTSNLAKGALSLSKHKVIVKELAAIQNLGGMDVLCTDKTGTITEDRVVLVQHL NPLGDLSDEVLNLAYLNSSYQTGWKNLMDIAVINFYEEHQWKTPFKNVTKIDEIPFDFSR RRLTVVVNADDHQLMITKGAVEEMEEVCTHAQINGEIVPLSSAVREELRRVNVQMNKQGM RVLAVAVKKDVHKEAVYSVEDEKEMTLIGFMGFLDPAKESAVSAIRSLHEHGVNVKVLTG DNDIVAKKVCKDVGIEVSHVLLGSQIEAMTDEELRAQVEETNLFAKLNPMQKSKIIELLQ AKGHTVGFMGDGINDAPALRKADVGISVDTAADITKDASSIILLEKSLNVLESGVIEGRK VFSNMMKYIKITISSNFGNVFSILVASAFLPFLPMLSLQLLIQNLIYDVAQLTIPWDNVD EEELLSPVRWETNGLAKFTVCIGPVSSIFDIITYLVMWFVFSANSLATQHLFQTGWFMVG LVSQTLVVHMVRTRKIPFIQSRASMPVMLSSLGAILLGFLIVATPIREVFDFVKLPANYW PWFFGIIIAYMLTVEVAKRLYIKITKEWI >gi|307679287|gb|GL456440.1| GENE 283 279817 - 280932 1676 371 aa, chain + ## HITS:1 COG:lin1044 KEGG:ns NR:ns ## COG: lin1044 COG1071 # Protein_GI_number: 16800113 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit # Organism: Listeria innocua # 1 371 1 371 371 527 70.0 1e-149 MAKAKKQKPIDFKELMAKVDADFPTFQILDQDGKIVNEDLVPDLSDEELVELMTRMVWSR VLDQRSTALNRQGRLGFFAPTAGQEASQLASQFAMEKEDYLLPGYRDVPQLVQHGLPLRE AFLWSRGHVAGNYYAEDLNALPPQIIIGAQYIQAAGVALGLKKRGKENVVFTYTGDGGSS QGDFYEAINFAGAYQANGVFIIQNNGFAISTPREKQTAAKTLAQKAVAAGIPGIQVDGMD PLAVYAIAKEARDWSAAGNGPVLIETLTYRYGPHTLSGDDPTRYRSKEMDDEWVQKDPLT RFRKYLTDKGLWSEAKEEEIIEKTKEEIKVAIAEADKAPKQKVSDFLKNMFEVQPQTIKE QIAFYEAKESK >gi|307679287|gb|GL456440.1| GENE 284 280935 - 281912 1299 325 aa, chain + ## HITS:1 COG:lin1045 KEGG:ns NR:ns ## COG: lin1045 COG0022 # Protein_GI_number: 16800114 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit # Organism: Listeria innocua # 1 325 1 325 325 498 76.0 1e-141 MAQKTMIQAITDALALELEKDENVLIFGEDVGNNGGVFRATEGLQEKFGEDRVFDTPLAE SGIGGLAFGLALQGYRPVPEIQFFGFVFEVFDEIVGQMARTRYRMGGTRNMPITVRAPFG GGVHTPELHSDNLEGLIAQSPGVRVVIPSNPYDAKGLLISSIRSNDPVVYLEHMKLYRSF REEVPDEAYEVPLDKAAVTREGTDVSIITYGAMVREAIKAADSLAKDNISAEIIDLRTVA PLDVETIINSVEKTGRVVVVQEAQKQAGVGAMVVSEISERAVLSLEAPIGRVSAPDTIFP FGQAENIWLPNAKDIEAKAREIVEF >gi|307679287|gb|GL456440.1| GENE 285 282055 - 283344 1683 429 aa, chain + ## HITS:1 COG:lin1046 KEGG:ns NR:ns ## COG: lin1046 COG0508 # Protein_GI_number: 16800115 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Listeria innocua # 3 428 113 543 544 469 62.0 1e-132 MAYQFKLPDIGEGIAEGEIVKWFVKPGDTINEDDTLLEVQNDKSVEEIPSPVTGTVKNIV VPEGTVANVGDVLVEIDAPGHNSAAPAAAAPATDAPKAEASAPAASTGVVAAADPNKRVL AMPSVRQYAREKDVDITQVTATGKGGRVIKADIDAFVSGGSQAAPATEAAATEAAPKAEA VAPKAAPKAFTSDLGEMETREKMTPTRKAIAKAMVNSKHTAPHVTLHDEVEVSKLWDHRK KFKDVAAANGTKLTFLPYVVKALTSTVQKFPILNASIDDAAQEIVYKNYFNIGIATDTDH GLYVPNVKNANTKSMFAIADEINEKAALAIEGKLTAQDMRDGTITISNIGSVGGGWFTPV INYPEVAILGVGTIAQEPVVNADGEIVVGRMMKLSLSFDHRIVDGATAQKAMNNIKRLLA DPELLLMEG >gi|307679287|gb|GL456440.1| GENE 286 283352 - 284758 787 468 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 11 468 5 458 458 307 36 4e-82 MVVGDFAIELDTVVIGAGPGGYVAAIRAAEMGQKVAIIEREYIGGVCLNVGCIPSKALIA AGHHYQEAQDSSTFGVTAKGVELDFAKTQDWKDNTVVKSLTGGVGMLLKKHKVEIIEGEA FFVDENTLRVIHPDSAQTYSFNNAIVATGSRPIEIPGFKFGGRVLDSTGGLNLKEVPKKF VIIGGGVIGAELGGAYANLGSEVTILEGSPSILPTYEKDMVKVVTDDFKKKNVTIVTSAM AKEAVDNGDSVTVKYEVNGKEESVEADYVMVTVGRRPNTDDLGLEQAGVEIGERGLIPVD NQGRTNVKNIFAIGDIVPGAALAHKASYEAKIAAEAISGKKVAVDYKAMPAVAFTDPELA SVGMTVAEAKEAGIEAKGYKFPFAGNGRAISLDKTEGFMRLVTTVEDNVIIGAQIAGVGA SDMISELALAIESGMNAEDIALTIHPHPSLGEITMDTAELALGLPIHI >gi|307679287|gb|GL456440.1| GENE 287 284872 - 285858 903 328 aa, chain - ## HITS:1 COG:lin1114_1 KEGG:ns NR:ns ## COG: lin1114_1 COG4936 # Protein_GI_number: 16800183 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Predicted sensor domain # Organism: Listeria innocua # 15 117 13 115 149 107 42.0 4e-23 MTVELKNILDLEKWEKLQESLALSTRLAIILVDYKGRPVTKHSQVQPFCQLVRHSPELSK LCEKCDARGGLEAVRTGQPFIYRCHFNIVDMAIPIIVDDQYVGAIMAGEVLLEDHQEELE QVLTMNDAFIQEFLVTHQELYQQYPVLELADLEKSATLIADLSQYIISEAIKKDYLINTY KQSLQISSRKEELEPLNMIQKDIQQTLLTAQLTPSSAYQTKNKQLQPVLDALWENKSLRL NLQELADLVHLTPTYLSRLLKEEFGIPFSQFYRQLKITWAKQLLLETDKTIAQISEDLGF VEDSYFVRIFKQETGETPLKYRKRKNRA >gi|307679287|gb|GL456440.1| GENE 288 286019 - 287158 1479 379 aa, chain + ## HITS:1 COG:gldA KEGG:ns NR:ns ## COG: gldA COG0371 # Protein_GI_number: 16131783 # Func_class: C Energy production and conversion # Function: Glycerol dehydrogenase and related enzymes # Organism: Escherichia coli K12 # 1 372 14 375 380 283 42.0 5e-76 MRKALILPTKYVQGEDELLNLGYFVSTFGKKALLIANPADVDRVRPQLEETAKKFDITFV EGGFSGEVTREETKRLQNVGQKEQADCIIGLGGGKAIDASKVVAEGENLIIVPTIAAQDA PTSHSAVLYHEDGSFDDYAYFKQSPSVVMVDTKVVAKAPTRFLVAGMGDALSTYFEARAT HNSYSRVNASLPMGSREGLTPAASGTYAALAMAKLCWENLQEDGLKAKLACDANVVTESL NKIIETNILLSGLGFESGGLAAAHAIHNGMTVLPGAHSYLHGEKVAFATIAQLVLEDAAK DELEAVLDFSASVGLPLTLSDIGVDEITYEEALEVAKIACIPEESIHSMPFPIVVEEVAN AIIVADKVGQEYKTRHKLD >gi|307679287|gb|GL456440.1| GENE 289 287171 - 287569 560 132 aa, chain + ## HITS:1 COG:DRB0052 KEGG:ns NR:ns ## COG: DRB0052 COG3412 # Protein_GI_number: 10957457 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Deinococcus radiodurans # 1 127 1 127 133 85 41.0 3e-17 MKADILLVSHSKMITDGIKEMIEQMNASEEITIHSLGGTSDGSLGSDPMKIIDTINEADS DREFLIFADLGSAVLSSELAFDMLEEDQQKHYHLVDAPLVEGAFAAAITAGVSDDLTQIL AEAQNAGKKGWN >gi|307679287|gb|GL456440.1| GENE 290 287570 - 288553 1329 327 aa, chain + ## HITS:1 COG:L45677 KEGG:ns NR:ns ## COG: L45677 COG2376 # Protein_GI_number: 15672230 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Lactococcus lactis # 15 327 1 315 316 382 62.0 1e-106 MKKIINEPGKIVEEMLQGIVKSYGNLVHQVEDSRVIARNDSNKQVGLVSGGGSGHEPAHA GFVGDGMLNAAVLGDVFTSPTPDQILTGIQAADQGAGVLLIVKNYTGDILNFEMAKDMAD MEDIHVEMVVVDDDIAVEDSTYTAGKRGVAGTVLVHKILGHHARQGASLEELVSLGEKIV SSTKTIGVALKAATVPEVGKPGFTLPEDEIEFGVGIHGEPGYRREKIQPSKELAKELVEK TLSSYEQQPQTVGVLVNGMGGTPLMEQFVFMNDVLTLLEDKGVQVTFHKVGNYMTSIDMQ GLSLTMIDLATKDWQTALESNVTTISW >gi|307679287|gb|GL456440.1| GENE 291 288566 - 289168 875 200 aa, chain + ## HITS:1 COG:lin2844 KEGG:ns NR:ns ## COG: lin2844 COG2376 # Protein_GI_number: 16801904 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Listeria innocua # 11 196 11 194 198 194 53.0 9e-50 MELTVKDIQTWLDNYSKVIEEKKDYLSELDTPIGDGDHGNNMARGMAEYKIAFDKKVPTT ITETFKVLSMALISKVGGASGPLYGTAFMNMTKATKDLETISSPEQLKEIVQQGLAGIQM RGKAEPGDKTMVDVWAPVAEVIGTEQFNEEKIEQFAEATKDWVAKKGRASYLGERAIGHI DPGAASSALLFEELVKVINQ >gi|307679287|gb|GL456440.1| GENE 292 289307 - 290074 880 255 aa, chain + ## HITS:1 COG:no KEGG:EF1362 NR:ns ## KEGG: EF1362 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 255 1 255 255 430 97.0 1e-119 MKKHVIVGCLLIVSSMFVSACGSSSDVTTEKTSVTKQVEATGQSTSSSIDQTKYDAIITE AKKLTVEGQYKESEEKLATIPVSDLGKPHYSIVKETVEKLNNQNNEGLKRQEEVAVEKQT KSSPAPTESLKPIPDEFAKWATTYLFYYPRGDQKQAGLIIESNGAVTQTNTNGEIYTGKA EISGASGTILSYDTTSYRPTTQPATKSITPNVKITVTWNNGGGVDVYYGYVSYSQRLALT DGIAVTDGVKEVWLS >gi|307679287|gb|GL456440.1| GENE 293 290147 - 291298 1467 383 aa, chain - ## HITS:1 COG:L13187 KEGG:ns NR:ns ## COG: L13187 COG3425 # Protein_GI_number: 15673554 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxy-3-methylglutaryl CoA synthase # Organism: Lactococcus lactis # 1 382 1 382 384 497 65.0 1e-140 MTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAE AILTKEDKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARSFEIKEACYGATAGLQL AKNHVALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVASEPRILALKEDNVMLTQ DIYDFWRPTGHPYPMVDGPLSNETYIQSFAQVWDEHKKRTGLDFADYDALAFHIPYTKMG KKALLAKISDQTEAEQERILARYEKSIIYSRRVGNLYTGSLYLGLISLLENATTLTAGNQ IGLFSYGSGAVAEFFTGELVAGYQNHLQKETHLALLDNRTELSIAEYEAMFAETLDTDID QTLEDELKYSISAINNTVRSYRN >gi|307679287|gb|GL456440.1| GENE 294 291484 - 293895 2720 803 aa, chain + ## HITS:1 COG:L10433 KEGG:ns NR:ns ## COG: L10433 COG1257 # Protein_GI_number: 15673552 # Func_class: I Lipid transport and metabolism # Function: Hydroxymethylglutaryl-CoA reductase # Organism: Lactococcus lactis # 393 801 4 409 410 490 62.0 1e-138 MKTVVIIDALRTPIGKYKGSLSQVSAVDLGTHVTTQLLKRHSTISEEIDQVIFGNVLQAG NGQNPARQIAINSGLSHEIPAMTVNEVCGSGMKAVILAKQLIQLGEAEVLIAGGIENMSQ APKLQRFNYETESYDAPFSSMMYDGLTDAFSGQAMGLTAENVAEKYHVTREEQDQFSVHS QLKAAQAQAEGIFADEIAPLEVSGTLVEKDEGIRPNSSVEKLGTLKTVFKEDGTVTAGNA STINDGASALIIASQEYAEAHGLPYLAIIRDSVEVGIDPAYMGISPIKAIQKLLARNQLT TEQIDLYEINEAFAATSIVVQRELALPEEKVNIYGGGISLGHAIGATGARLLTSLSYQLN QKEKKYGVASLCIGGGLGLAMLLERPQQKKNSRFYQMSPEKRLASLLNEGQISADTKKEF ENTALSSQIANHMIENQISETEVPMGVGLHLTVDETDYLVPMATEEPSVIAALSNGAKIA QGFKTVNQQRLMRGQIVFYDVADPESLIDKLQVREAEIFQQAELSYPSIVKRGGGLRDLQ YRAFDESFVSVDFLVDVKDAMGANIVNAMLEGVAELFREWFAEQKILFSILSNYATESVV TMKTAIPVSRLSKGSNGREIAKKIVLASRYASLDPYRAVTHNKGIMNGIEAVVLATGNDT RAVSASCHAFAVKEGRYQGLTSWTLDGEQLIGEISVPLALATVGGATKVLPKSQAAADLL AVTDAKELSRVVAAVGLAQNLAALRALVSEGIQKGHMALQARSLAMTVGATGKEVEAVAQ QLKRQKTMNQDRAMAILNDLRKQ >gi|307679287|gb|GL456440.1| GENE 295 293915 - 294967 927 350 aa, chain - ## HITS:1 COG:lin0948 KEGG:ns NR:ns ## COG: lin0948 COG0628 # Protein_GI_number: 16800017 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Listeria innocua # 1 332 1 330 348 277 50.0 3e-74 MSLYQKFIQNERLRRFCVLALIIFVLYLSRSMITTILLTFIFTYLAVRLVHFVQRYMKIP TIVIVLLTYALVVFLIYLAITKYVPVLVNQTTQMINSVVDFYQSPHTDTNQVLQFIDQYL EKSNLLSQLQNGASMILRYIQDIGAVGLSFVMSFILSFFFMIEKKQMADFSKLFLKSDFD WFFQDIYYFANKFVNTFGVVMEAQFFIAVVNTVITTLALAIIGFTQLPSLAIMIFILSLV PVAGVIISCIPLSFIAYSQGGLNDVIYILALITIVHLFESYVLNPKFMSSKTELPIFYTF VILLVSERLFGVWGLIVGIPVFTFFLDVLKVKPIRGLKRLPNVKKNSSAE >gi|307679287|gb|GL456440.1| GENE 296 294984 - 296189 985 401 aa, chain - ## HITS:1 COG:lin1003 KEGG:ns NR:ns ## COG: lin1003 COG1434 # Protein_GI_number: 16800072 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 66 401 10 344 344 208 40.0 1e-53 MQFYGDLTFLGVYLLGLFFIPSWRKKKKEHDWLPWMFGWTVFMFFSYVLYLEIIRGTAFF LIPIAFFGLFALFYFKEKRRLLNGTLFNIFLVVLATYLGITAIRTNNYFLITLAIIALLA IFIALALGLYALIIFLYWNAVVVMRKEGRSLGNLLTLLLAIGLTLLLIYNFFFQSLLPTW LSLPLTIAPFILTYFAFVFYNFLTVSTLYQFNQPKYTQDYIVVLGSGLINGEIVPPLLQA RINKAIQFYKAQNRATLNPPKIVMSGGQGPDELLPESVAMKMYALTQGIPDDDILVEAHS KNTLENMRFSKETMIEDFGNANFQAIFTTNNYHLFRAGLFARMAGLKADGIGAKTAFYFL PNAFIREFIAIVVMYKRRHIIVCGLAAIGMVMLFLTGLIIQ >gi|307679287|gb|GL456440.1| GENE 297 296345 - 296545 278 66 aa, chain - ## HITS:1 COG:lin1401 KEGG:ns NR:ns ## COG: lin1401 COG1278 # Protein_GI_number: 16800469 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Listeria innocua # 1 66 1 66 66 98 81.0 3e-21 METGTVKWFNSDKGFGFITAENGNDVFVHFSAIQGDGFKTLEEGQAVTFEIEEGQRGPQA TNVTKA >gi|307679287|gb|GL456440.1| GENE 298 296843 - 297964 1116 373 aa, chain - ## HITS:1 COG:no KEGG:EF1368 NR:ns ## KEGG: EF1368 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 373 1 373 373 707 99.0 0 MANQKKDSLSTLFSEEVHGPFVTFLFNTHVAHQNVEKDSLVLKNFAKAAKTRFEKKFPEE KWAVFQEKIDALLADASFWRNGTASVSIILSPENTFVQRLDVPVDDQYYVDTIPYLLGLV KDKQFNYHYYLLALNRDSMKLYKVDHTTVTPVELPKDAPTDVVTALGDELTGGNLNFSTQ GSSNGSKEGVAYHSINTKDKEVEIDWVNYYQAVDTFLKDQLDNPEKLPLYLYALPENQTL FKKIAKNPYYDCSISVAASPAQATIQDIRSASEKIAAELTEKETASYNKLLDRKFLDQFT DISPAVADGKISHLFIATSLFVTENNEMSSEEYDRRKLLNTIAYQVIQNGGQVFVLDQKA APDEKSLAAILRY >gi|307679287|gb|GL456440.1| GENE 299 298301 - 298651 423 116 aa, chain - ## HITS:1 COG:lin2607 KEGG:ns NR:ns ## COG: lin2607 COG1396 # Protein_GI_number: 16801669 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 1 100 1 97 107 68 38.0 3e-12 MTLISRIKQLAQSKQLTLAQLERNVGISNGQIRRWDTSSPKVENLLKIADYFSVSLDYLM GRTQQTEINHQAPMKSTQKELHIHITTEELTEEEITQLEEEANRFLRFRKFEMTNS >gi|307679287|gb|GL456440.1| GENE 300 298843 - 300276 1145 477 aa, chain + ## HITS:1 COG:CAC3668 KEGG:ns NR:ns ## COG: CAC3668 COG0477 # Protein_GI_number: 15896900 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Clostridium acetobutylicum # 11 472 6 467 486 370 44.0 1e-102 MEKIKSYQEDSEVQKNRWWILVSVAMFTFMSTLDSSIVNIALPTISKEMSVPMNQAEWVV SIYLMVVCACLLLFGKIGDSFGKIKVYRIGTVIFTIGSLLCGFNQSLSFLLFARVVQSIG ASMTMATNSGIITEVFPLNERGRALGAVGAFVSLGAIAGPGIGGLILSNFSWSYIFWINV PVGLVTILIGEKFLPKDITKTKEKIDFSGFACIAIAIMTFFGGIFLGQESGFGSLQSYLL FIIAVIALGLFIMVERKRKSPLIKFAIFKNKIFTLSLLSAVLIFASNFFVNVVIPFYLQD ARKLSASYAGLLMMVFPLLMVVGAPLSGYLTDKIGPGILTFGGLLLLCCTSLMYMFLDMN SPIWYYVIATAIMGLGNALFQSPNNTMVMSSVEKQDLGVAGSMNSFARNLGMVIGIALST TILYRGMSEAYGERVTTYLANRPDIFIVGMRETFFVAFLLCVAAFILTILRFRKTTK >gi|307679287|gb|GL456440.1| GENE 301 300481 - 301155 839 224 aa, chain + ## HITS:1 COG:BH3178 KEGG:ns NR:ns ## COG: BH3178 COG2220 # Protein_GI_number: 15615740 # Func_class: R General function prediction only # Function: Predicted Zn-dependent hydrolases of the beta-lactamase fold # Organism: Bacillus halodurans # 1 222 1 224 226 227 52.0 2e-59 MELIGHGHSCIEIRLNDGTNLLFDPFINGNPLADVSLEDLHPDYILITHGYSDHIGDMLA IAQANKATIIAIAEVATYAQSQGVKAHGMNLGGRYVFPFGSVKFVPALHSSGYEIDGVMT YMGEASGIILEAEDKKIYHAGDTALFSDMRLFAKDKSIDVAFLPIGDNYTMGPEDALEAV SYLNPKITIPIHYNTFPVIQQNPAIFVEQVVGGKVLNPGETILV >gi|307679287|gb|GL456440.1| GENE 302 301165 - 302484 1364 439 aa, chain + ## HITS:1 COG:lin1611 KEGG:ns NR:ns ## COG: lin1611 COG4109 # Protein_GI_number: 16800679 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing CBS domains # Organism: Listeria innocua # 1 438 1 437 437 488 57.0 1e-137 MATKHDQILKHIEELPIGDRISVRSIAKSLSVSEGTAYRAIKDAENIGLVSTIQRVGTIR IERKLKKHIEKLTFGEVVRIIEGDVLGGSSGLDKVLNKFVIGAMTETAMTRYITPGSLMI VGNRQGVQKLALENGAAVLITGGFETSEEIAQLADRLGMPVLRTTYDTFTVATMINRALS DQLIKKDILLVSDIYTALEKTNYLLTTQTIADYQALSESTHHSRFPVVNKKLRLVGIVTA KDVIGKSEHLTVDKVMTKDPNVVKKMMSVASVSHQMIWDGLEVMPVVEDDLALVGIVSRQ DVMKAMQLVQRQPQIADTISDQISGEVMPVEENGKETTRFRFSVAPQMVNSVGTISFGVL SEIISNVTQRTMLMNQKRNVLIEQVNLHYLRLIQLESELDIRPRILEIGRRSAKLDIEVY LENVIVAKAIVVCQVMERT >gi|307679287|gb|GL456440.1| GENE 303 302498 - 303451 931 317 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B [Streptococcus pneumoniae SP18-BS74] # 1 308 1 306 311 363 59 7e-99 MDVVKEIMAAIKQYETIIIHRHQRPDPDAIGSQVGLAELLRASFPEKNIYQVGGPVEGLE FLAEMDVITDDVYRGALVIVTDTANTPRISDARFSLGDQLIKIDHHPNDEPYGDLVWVNT NASSCSEIIVDFWQQHLAELTMTDNAARLLYAGIVGDTGRFLYPSTSAHTLAVAAQLRTF NFNAADLNRELDQMPLKVAKLAGYIYQNLEIDANGAARVVLPQSILNSYDIVDSETAAIV SMPGKIEDVLSWAIFVEQPEGYYRVRLRSKGPIINTIAKKHHGGGHPLASGANARDTAEI EVIYQEIQAACQEWAQK >gi|307679287|gb|GL456440.1| GENE 304 303565 - 303903 395 112 aa, chain + ## HITS:1 COG:lin0389 KEGG:ns NR:ns ## COG: lin0389 COG2824 # Protein_GI_number: 16799466 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism # Organism: Listeria innocua # 4 111 3 110 111 174 81.0 3e-44 MTEQLPNCPECGSAYAYEDRGLFICPECGHEWSPTEEVAEEGLVVKDSNGNLLADGDSVT VIKDLKVKGASGAIKQGTKVKNIRLVEGDHNIDCKVDGFGPMKLKSEFVKKN >gi|307679287|gb|GL456440.1| GENE 305 303964 - 304275 350 103 aa, chain - ## HITS:1 COG:no KEGG:EF1375 NR:ns ## KEGG: EF1375 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 103 1 103 103 157 100.0 1e-37 MLQPYFAFGVPLFLLVLYLLFALIHRQTTIHYLRFILLLISTFLMVFSFQVLQESWTINP ETLKDAAYSPQWLWIPLGIGLILTLYNAWHGLRTMIKYKTDKH >gi|307679287|gb|GL456440.1| GENE 306 304418 - 305599 805 393 aa, chain + ## HITS:1 COG:L188881 KEGG:ns NR:ns ## COG: L188881 COG4767 # Protein_GI_number: 15673730 # Func_class: V Defense mechanisms # Function: Glycopeptide antibiotics resistance protein # Organism: Lactococcus lactis # 1 241 1 236 354 167 43.0 3e-41 MAVYSEPIKWAIIIFPFLAFFISGALLIYEYRKYGSFVWTRAMILYSFVFYLLCAYFLVI LPLPSRAEVAQYTGPTMELRPFHFISGILNETVFSLKDPSTYLPALKQHAVLEPLFNVLL VLPFGVYLRYYFKCSFLKTVLASFLLSLFFELTQLSGLYFIYPRSYRLADVNDLINNTVG GMVGYWLTPLFTFLLPTREEIDATSYEKGQTVSLLRRFFAWGIDWLVIGFVQGLLVFGLN FIPAYKNWAINYPIFSDRMWFFIMVFAVFIVMMKLTNGQTLGKKVVRIRVVETGHEKIRL KALFVRYGYLYFVYGLISIYLANAADLLNSSNRMLQMVSLLLYLFCLILYLLFLINVLLT LIRKKRRLFYEKASHTYTVSTLEVAKTKESAGE >gi|307679287|gb|GL456440.1| GENE 307 305662 - 307011 1544 449 aa, chain + ## HITS:1 COG:L0340 KEGG:ns NR:ns ## COG: L0340 COG0513 # Protein_GI_number: 15672392 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Lactococcus lactis # 4 447 3 445 446 554 62.0 1e-157 MPSFKQFQFQPFINEALAEKGFEEPTEVQEKLIPIIQKGKSVIGQSQTGSGKTHTFLLPL MDKVKPTIDEVQIVITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQLNKLK HQQPHVVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLPEKLQ MLVFSATIPEKLRPFLKKYLENPVIEHIKPKAVISETIDNWLISTKGKNSNQIIYQLLTI GHPYLAIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQYVVAT DLAARGIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAITLYSPADDEAITQIEQ LGVSFKPKEIKNGEIVETYDRNRRTKREKSREELDPTLIGLVKKKKKKIKPGYKKKINWA IEDSNKKKRKIERRQKDRSARKAKKNSSN >gi|307679287|gb|GL456440.1| GENE 308 307560 - 308240 500 226 aa, chain + ## HITS:1 COG:no KEGG:EF1378 NR:ns ## KEGG: EF1378 # Name: not_defined # Def: transcriptional regulator, putative # Organism: E.faecalis # Pathway: not_defined # 1 226 1 226 227 388 97.0 1e-106 MRRILVLTKNILVEQTFQQQLQYLNYEVFCTNCFEETVEHELTFFNYFDAIVLSETLSQN DCLRLLGSLSSLEKPIYRRSQSMCNKREAEIWQERGIIRWLGLKDSLEEIREKIDTVDQS FAEVTAELLDDQVKKIRFTKNEQRFLKILYQHAHEGLDRDQICRLLWQKEPDASTKSQLS FVCKRVKQKFSDAGMNEEIITTSWGKGYQINEKILPYLEQTLFETA >gi|307679287|gb|GL456440.1| GENE 309 308589 - 311231 3499 880 aa, chain + ## HITS:1 COG:lin1539 KEGG:ns NR:ns ## COG: lin1539 COG0013 # Protein_GI_number: 16800607 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Alanyl-tRNA synthetase # Organism: Listeria innocua # 1 877 1 874 879 1133 65.0 0 MKELTSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN PRITNAQKSIRTNDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAF DPEKLYVTVYPKDTEAKRIWRDEVGLSEDHIIDVEDNFWDIGAGPSGPDTEIFYDRGEEF LDIPEDDPENYPGGENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERVVSIIQ DAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGALPSNE GRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKVVRTEE ERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDEGLKVD HAGFETEMEAQRERARSARSKETSMGVQSALLTDIKVESKFVGYTELTHDSELFVIIQGD ALVNEASAGTAELIFAETPFYAEMGGQIADRGYVKNTAGDVVANVVDVKKAPNGQFLHKV EVLAPLAEGQIYQLQVDERMRTRILKNHTATHLLHRALKDVLGEHANQAGSLVAPGHLRF DFTHFGQVTSEELARMEAIVNEKIWEAIPVVTIETDIDTAKNMGAMALFGEKYGKEVRVV NIGDYSIELCGGTHVANTEDIGIFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKE IATLVKSPQLKEVVTKTEQLQQQLRDLQKENEQLAGKLANQQAGDIFKDVKDVNGVRYIA AQVNVKDMNQLRQLADQWKQKELSDVLVLATAQDEKVSLLAAMTKDMNGKGLKAGDLIKA IAPKVGGGGGGRPDMAQAGGKNPAGIADALAEVENWLANA >gi|307679287|gb|GL456440.1| GENE 310 311434 - 312150 866 238 aa, chain + ## HITS:1 COG:lin1490 KEGG:ns NR:ns ## COG: lin1490 COG2384 # Protein_GI_number: 16800558 # Func_class: R General function prediction only # Function: Predicted SAM-dependent methyltransferase # Organism: Listeria innocua # 1 232 1 233 234 199 48.0 3e-51 MNENQLSKRLATVGDLIPRGSRLADIGSDHAYLPVALMLENKLSFAVAGEVVEGPYQSAK TQVSKSNLTDKIIVRLANGLDAIEPEDQIDVISICGMGGTLIRDILEAGRKKNRLTGKER LVLQPNIGEPTLRRWLMANEYSIIDETIVEENRKLYEIIVAEKTEQSVSYTDQELLFGPV LIKKQGPVFTKKWQRELKQRKTVLAQLAKASGEHIEKQAKLQQDQQLIEEVLTNGCER >gi|307679287|gb|GL456440.1| GENE 311 312134 - 313252 1350 372 aa, chain + ## HITS:1 COG:SP1609 KEGG:ns NR:ns ## COG: SP1609 COG0327 # Protein_GI_number: 15901449 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 8 130 6 128 265 162 59.0 1e-39 MAVNGKTLIRRFNDYCPEWLAETGDPVGLHIGTLDKPIENVMVTLDVRPEVVAEAIEKQV DLIIAKHPPIFRPVKRLITDNFQEKMYADLLKHDIAVYAAHTNMDIIDNGLNDWFCELLG IKQTTFLTKTHTVPYKKLAVFVPIDEAPQMREALGLAGAGSQGDYSKTSYSLIGTGRFTP TQGANPTIGEIGQESVVQEAKIEVIFPETKQEQVLAAMLQAHLYEEPAYDVYTIENQSKE FGLGRVGVLDKPVRFSDFVQQVKEAFQLDGLRVIAKDDTKMIQRVAICGGSGEKFYHDAL RKQADVYITGDVYYHTAHDMIAEDLPVIDPGHYIEALCKPKLVELMNQWKQENEWAVSIF ESEANTNPFRFK >gi|307679287|gb|GL456440.1| GENE 312 313282 - 314511 1823 409 aa, chain + ## HITS:1 COG:L60596 KEGG:ns NR:ns ## COG: L60596 COG2195 # Protein_GI_number: 15673792 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Lactococcus lactis # 2 407 3 408 413 538 66.0 1e-153 MYENLLPRFLRYVKTETRSDATSTTTPSTQTQVAFAQTLKKELEELGMSDVIYNETNGFV IATLPSNVEKDVRSIGFIAHMDTADFNAVNVSPQIVENYDGESTIPLDKEGKFTLNTKDF PNLKNYRGETLITTDGTTLLGADDKSGIAEIMTAMEYLINHPEIKHGTIRVAFGPDEEIG VGADKFDVAQFNVDFAYTMDGGPVGELQFETFNAAQAEITIQGKNVHPGTAKNTMINALQ LGIDFHNALPADEVPEKTEGEEGFYHLAAFAGTPEEATMTYIIRDHNREIFEARKAKIKE IQQTLNAPFDEERIKVDLFDQYYNMREVIEKDMSIVEIAKQAMEELSIQPIIEPVRGGTD GSKISYLGIPTPNIFAGGENMHGRFEFVSLQAMEKATNVIIKIAELNAK >gi|307679287|gb|GL456440.1| GENE 313 314483 - 314578 58 31 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKLQQESKLSIARFLTFLLSASFILHLIQQF >gi|307679287|gb|GL456440.1| GENE 314 314657 - 314923 251 88 aa, chain + ## HITS:1 COG:MA2252 KEGG:ns NR:ns ## COG: MA2252 COG3326 # Protein_GI_number: 20091091 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Methanosarcina acetivorans str.C2A # 1 68 1 70 90 58 45.0 3e-09 MLQWIVIIYLLVINLVLFSMMGYDKKQAKRGNWRIPERRLLTIGLVGGGLGGLMGQKKFH HKTQKPVFALCYSIGVIAMISCIYLTFK >gi|307679287|gb|GL456440.1| GENE 315 314943 - 315971 831 342 aa, chain + ## HITS:1 COG:lin2698 KEGG:ns NR:ns ## COG: lin2698 COG0392 # Protein_GI_number: 16801759 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Listeria innocua # 11 332 14 341 357 65 21.0 2e-10 MKGKVKIGLNMLLMIIVLGVIFYVMDNSLSDIFAQLMETSWLVLIAVIFFGVVYQFAEGR SIKEIARYFNKDFTTVDGFFTSCYVAFYRIISFGTGTLLSEIYFYKKKGIPVSKSVGITA LHMIMYKAAVIFLAIIGLIIQFSLFYENAPKMIPFILAGVILTLVIIAALLILSSSLKLQ VLLVKFANRWFKRPKLRDWVDNCNLQIYSLRAAVQTITQDRSALLRIFSWNVFKLLFWYI IPYIVLVENHPNIDLLLVMSFTSFAVILSGVIPTPAGIGPFEFVYLLLFKPLVGNVDAVA SVLLYRFGSFVLPFLIGLVYVAIEKRKSLRIEIEEIKRQTDE >gi|307679287|gb|GL456440.1| GENE 316 316112 - 316687 452 191 aa, chain + ## HITS:1 COG:BH3017 KEGG:ns NR:ns ## COG: BH3017 COG0746 # Protein_GI_number: 15615579 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin-guanine dinucleotide biosynthesis protein A # Organism: Bacillus halodurans # 7 189 5 197 198 81 30.0 7e-16 MAKIIADCTAVLLCGGKSSRMGFDKALLKIQGQYVILQTAEKLMELFEEVILVTNDSQKF PKAFRKCTIIQDMYLGKGPLGGIVTAMNYTQKAEVFVIACDIPTFSPKLVYQLASKRGQN QVTIFDFEGRQEPLFGFYRCSCLPTFQKQLAQNNYQVRQEFERLSVKTVQLSKENQLKNV NRKEELSQWYR >gi|307679287|gb|GL456440.1| GENE 317 316703 - 316918 272 71 aa, chain + ## HITS:1 COG:lin0912 KEGG:ns NR:ns ## COG: lin0912 COG2116 # Protein_GI_number: 16799984 # Func_class: P Inorganic ion transport and metabolism # Function: Formate/nitrite family of transporters # Organism: Listeria innocua # 1 71 1 71 270 59 42.0 2e-09 MDFFSSEEIVASLGDKAKMKGELSFVRLCILGIMAGFCIALGYLAFIRITGTAPTEWGSF NNFLGGALFPV >gi|307679287|gb|GL456440.1| GENE 318 316973 - 317527 337 184 aa, chain + ## HITS:1 COG:lin0912 KEGG:ns NR:ns ## COG: lin0912 COG2116 # Protein_GI_number: 16799984 # Func_class: P Inorganic ion transport and metabolism # Function: Formate/nitrite family of transporters # Organism: Listeria innocua # 8 177 98 268 270 157 53.0 1e-38 MTLGVLQKKVRVGALCYNWLVVLLTNCLGGFLVAYLFGHIVGLTEGAFLDKTVAVAQAKI ADPPIVAFVSGIGCNIFVCLAVYLGALAKSYLGKMFGLWFPVMVFVVCGFQHVVANAFII PAAIFSQSTTISWWDYLQNTLWVFLGNAVGGSLFMAVPLIFMTKPATVKPRVEKTIQTEE LYGN >gi|307679287|gb|GL456440.1| GENE 319 317517 - 318098 552 193 aa, chain + ## HITS:1 COG:no KEGG:EF1387 NR:ns ## KEGG: EF1387 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 193 1 193 193 352 97.0 7e-96 MAIEVPNMIQIGSTGRNSGKTTLAEALIKQYQEIYPIYGLKIITISGQRGVCQRGTKGCG ICTSITAGYELVEEKETIGNKDTMKLLAAGCQKVFLLKVFQENLAEAIQQFLKAVPAQAL IICESNSLRNVVQPGLFLMMNNQNRQKESAKKVIDKADFCLLSAEIPKELRIYYQGEQLQ VSLKGGNKKECVH >gi|307679287|gb|GL456440.1| GENE 320 318086 - 318574 639 162 aa, chain + ## HITS:1 COG:TM0012 KEGG:ns NR:ns ## COG: TM0012 COG1905 # Protein_GI_number: 15642787 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase 24 kD subunit # Organism: Thermotoga maritima # 8 157 25 175 176 84 28.0 9e-17 MCALSLIEKEAIILENDADPQRILNILIELQFASEEGYIDQETAQLVAEHLHLTEARVYE IVSFYAILKTEPQAKYVLKICNSTPCHYTGGAMVAEVLETILEVPENQPTPDGLFMYHSI PCIGACDLGPVIKIKDTVFSQLTEEKIYQLIQHLQNDCYEGL >gi|307679287|gb|GL456440.1| GENE 321 318586 - 319884 1117 432 aa, chain + ## HITS:1 COG:TM0228 KEGG:ns NR:ns ## COG: TM0228 COG1894 # Protein_GI_number: 15643000 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit # Organism: Thermotoga maritima # 8 417 112 516 545 354 44.0 2e-97 MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDIAHLRGRGGA AYPLGKKWRHLYHAKGTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSAK AGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENSA LLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADGG GTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRALKFIHFGGQSGPIGAVA TLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGTT RILELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFPEEFETTA ETEIYATSKGGW >gi|307679287|gb|GL456440.1| GENE 322 319887 - 322607 2586 906 aa, chain + ## HITS:1 COG:AGl347 KEGG:ns NR:ns ## COG: AGl347 COG3383 # Protein_GI_number: 15890285 # Func_class: R General function prediction only # Function: Uncharacterized anaerobic dehydrogenase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 7 905 30 946 973 744 42.0 0 MKTKLHTQTVTLSIDNQEVTVSKGTTILEAAKGLGVEIPTLCHLKELAPDGSCRMCVVEV EGGRRGGLTTACTAHCQEDMVVSTHSEKVADSRRFILDLLLSNHKLECFSCGKNGDCQLQ QYALDYGIDATSFTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIA NRGFETKMMPSYGQAFDQSICESCGNCVSSCPTGALTAKDTKEYRKWETQKIPTTCPHCG TGCQMNLLVKNNRLVGVEPLDGPANKNLLCVKGKFASYKFVGSGDRLTEPLIKRNGIFEP ASWEEALTLVSSKFNEIKAENGPDALAGFSCSRATNEDNYVFQKMVRAAFGTNNVDNCAR VCHSASVHGLAQTLGSGAMTNPIADITEDVDMILLVGSNPEEAHPVIGAQIRQAIQRGTQ VVVVDPRKINLVKDSALHLQVQAGTNVAFANGMMHVILKEGLADRHFIEERTEGFSDLEK MVADYTPEKVAEICHIHPEDLIQAARMYAKAEKAPIIYCLGVTEHSTGTEGVMSMSNLAM LVGKVGKPGCGVNPLRGQNNVQGACDMGCMPYDFPGYQKVNNPEVIDKFEKAWHVPLNRN TGLTSTKVLPAATAGNVKGLYIFGEDPIVTDPDTGHVRQALESLDFLVVQELFMTETAAY ADVVLPGISYAEKDGTFTNTERRVQRVRKAVEPRGQAREDYEIFCEVMTRMGYPCAYESA KEIMKEISAVTPSFGGINYERLEKESLQWPCRSLTDPGTPIMHVGSFARGKGLFKAIPYK QAQELPDEEYPYLMSTGRMLYHYNTRAMTGRTEGINQIANHSYIEINAVDAQALGIQEGD KVEVHSRRGKIETYAAVGNRVFPQEVFMTFHFPDGNVNEITNAVFDDIATIPEYKVCAVA IKPVNK >gi|307679287|gb|GL456440.1| GENE 323 322625 - 323827 933 400 aa, chain + ## HITS:1 COG:BH3021 KEGG:ns NR:ns ## COG: BH3021 COG0303 # Protein_GI_number: 15615583 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin biosynthesis enzyme # Organism: Bacillus halodurans # 2 384 8 396 423 186 32.0 5e-47 MIELEEAREKMTQHMKSQCETEEVALLDSLGRISGETIFAETAIPHFPRAGMDGYAVRAV ETRGATAESPSCLKVVGSLVAGDSMFYCNQTNNCAIKITTGAFIPTDFDAVVPQEWTDFG QDHVKIFRSVTAGQNYAEIGEDIAFQQKILAKHQQINSRMIGLLAMQGIDKVVVLKRMKV GILATGSELVSLEEPLSVGKIYNSNLYMLAAFVKASGNEVIHLDHCSDDPEELAKRLIEI SPKLDLLITCGGVSVGEKDNLPLAIKRIGGTELFHFVNMKPGTPVMGSQFQETLILSVSG NPFAAMVNLHLFYWTLLATFFNCVELNLKERTVILAHELAPSRLRRFYRAKEIDGTVNLV TKSHLSSNLSNTLETNCLLEQPAGVLLKKGALVKVYYWQT >gi|307679287|gb|GL456440.1| GENE 324 324117 - 324599 389 160 aa, chain + ## HITS:1 COG:BS_ydiG KEGG:ns NR:ns ## COG: BS_ydiG COG0315 # Protein_GI_number: 16077663 # Func_class: H Coenzyme transport and metabolism # Function: Molybdenum cofactor biosynthesis enzyme # Organism: Bacillus subtilis # 2 150 8 159 170 145 51.0 4e-35 MNTQGEVHMVDISEKNDTQRTALAYGEIHMLEATAEAIQTQMIKKGEVLQVARVAGITAA KRTFEWIPLCHLVALTKCEIQFDWRNQTCLEVRCFTKTVGSTGVEMEALTGVQAALLTIY DMCKAIDRGMTMTNIGLLEKNGGRSGHFIRSSIKSKESDE >gi|307679287|gb|GL456440.1| GENE 325 324605 - 324838 234 77 aa, chain + ## HITS:1 COG:lin1039 KEGG:ns NR:ns ## COG: lin1039 COG2896 # Protein_GI_number: 16800108 # Func_class: H Coenzyme transport and metabolism # Function: Molybdenum cofactor biosynthesis enzyme # Organism: Listeria innocua # 1 76 4 79 333 98 53.0 3e-21 MKDAFNREIDYVRLSLTDRCDLRCTYCMPATGLCFLKKEQLLTDDEIIFLLRILAKEGIK KVKLTGGEPLVRPNLLS >gi|307679287|gb|GL456440.1| GENE 326 324896 - 325570 593 224 aa, chain + ## HITS:1 COG:lin1039 KEGG:ns NR:ns ## COG: lin1039 COG2896 # Protein_GI_number: 16800108 # Func_class: H Coenzyme transport and metabolism # Function: Molybdenum cofactor biosynthesis enzyme # Organism: Listeria innocua # 1 224 101 333 333 142 36.0 7e-34 MKLAREAQGLKEAGLDGINISLDTLDPEEFREITRVGQLRNVLAGLEQAIDVGLPNIKIN TVARKELSEATIVELAEIAKKETVHLRFIEMMPIGLGKEHPGKQQEEVEAILTKHYGTLQ PYKKPLGNGPASYYALKDFKGKIGFISALGHCFCETCNRIRITADGHLKTCLHSADGYSL KEALAMEQTAELLGIIKSGIACKPEKHLFLEQQGEQRFMSQIGG >gi|307679287|gb|GL456440.1| GENE 327 325573 - 326007 357 144 aa, chain + ## HITS:1 COG:CAC1991 KEGG:ns NR:ns ## COG: CAC1991 COG2258 # Protein_GI_number: 15895261 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 4 144 3 143 145 130 46.0 7e-31 MKTGEIIAINISPRRGTQKKEIPEVNLIKGFGLENDAHGGNWHRQVSLLSFEEITAFNEK GARVGNGAFGENIIVSGIDLRQLPVGTKMKIGDSELVVTQIGKECHKHCQIYARVGDCIM PREGIFAVVVTEGHIKKGDQLDVV >gi|307679287|gb|GL456440.1| GENE 328 326000 - 326482 240 160 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|134277849|ref|ZP_01764564.1| ribosomal protein S16 [Burkholderia pseudomallei 305] # 4 150 2 169 194 97 39 9e-19 MFKVGIVTLSDRCFQGLAVDQSGPLIREQLPVLYQVTKQTILPDEENQLVELLQEWSKTC DLILTTGGTGLSERDRTPEATLRVAERIIPGISEGLRQLSLEKTPFAMLSRGVSVQRGRT LIVNLPGSPKSVTEHLHFLLPVLPHALDLITNKKIIHDEE >gi|307679287|gb|GL456440.1| GENE 329 326486 - 327457 1004 323 aa, chain + ## HITS:1 COG:SMc00519_1 KEGG:ns NR:ns ## COG: SMc00519_1 COG0303 # Protein_GI_number: 15965501 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin biosynthesis enzyme # Organism: Sinorhizobium meliloti # 8 323 10 320 340 101 27.0 2e-21 MKTIRTEEAVGLPLSHDITRIDYGKTKEVCFKKGHIVVQEDIPILLSLGKKHLFVSLDPA EIHEEEAATFLYNLLTDDSCQPSEVHEGKIVAKASTRGLLKVNREKLIALNEIEGLALST KVTNIEVQKDEKVAAFRVIPLTISKSQLEKARQLSTSEPLISVKPFKKIRVGIVTTGSEV YTGLVEDAFYPVLKAKFSAYPLVTIVKQEIVDDQPQKITVAIKKMLAQGVDLIVCTGGMS VDPDDLTPLAIKQTGAEIVTHGTPVLPGSMFLLAYKGEQTIIGLPGGVLFSEKTVFDLLL PRLMAKEVIKKSEIIDLSYGGYL >gi|307679287|gb|GL456440.1| GENE 330 327476 - 328276 869 266 aa, chain + ## HITS:1 COG:BS_yvgL KEGG:ns NR:ns ## COG: BS_yvgL COG0725 # Protein_GI_number: 16080391 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, periplasmic component # Organism: Bacillus subtilis # 4 262 3 257 260 159 38.0 4e-39 MSKQKKAVFLLSLFSLVALIAACTNQPQKETVSTKKEEITLAAAASLESVMEKKIIPAFE KEHPDIQVTGTYDSSGKLQMQIEKGLKADVFFSASTKQMNALVAEKLINKKSVVPLLENQ LVLIVPNQDQAKWHDFSDLKKAQMIAIGDPASVPAGQYAEEGLKALGAWSYVEKHASFGT NVTEVLEWVANASAEAGLVYATDAATNSKVAIVAAMPEAALKKPIIYPVGKVAASKKQKS ADAFLNFLQSQQCRKYFENIGFKLTK >gi|307679287|gb|GL456440.1| GENE 331 328285 - 328956 586 223 aa, chain + ## HITS:1 COG:alr2433_1 KEGG:ns NR:ns ## COG: alr2433_1 COG4149 # Protein_GI_number: 17229925 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, permease component # Organism: Nostoc sp. PCC 7120 # 1 216 3 216 223 164 45.0 8e-41 MDVRPILLSFQTAIIAILFTFVLGTGVAYIVFRLKNRKLKILLNSLFTLPLVLPPTVFGF FLLTIFGVQQPVGQFLLDFFAIQVVFSWPATVIAAVAVSFPLMYRSALTAFEQMDSELLA VAQTLGFSESRYFRKIALPLSMNGLLAGGVLAFARGLGEFGATTMLAGNIAGKTRTLPLA IYSAVASGDWRLANQYVVIMLLLCLIILFFTEFFSQRAWRRSE >gi|307679287|gb|GL456440.1| GENE 332 328953 - 329957 892 334 aa, chain + ## HITS:1 COG:sll0739_2 KEGG:ns NR:ns ## COG: sll0739_2 COG1118 # Protein_GI_number: 16331977 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type sulfate/molybdate transport systems, ATPase component # Organism: Synechocystis # 5 269 40 311 395 234 45.0 2e-61 MRLIVDIQKEFKSHTLQIQFETKTQTTGILGASGCGKSMLLKCIAGVETADKGQIVLNDQ VLFDAEQKINLSPQQRKIGLLFQQYALFPHLSVVENLTCVTKDLQLVTQLLASFHLTKVQ EQYPSQLSGGQRQRVAFARMLAAQPAYLLLDEPFSALDAPLKEELQIELQQRLSNLNQHA LIVSHSLDELYKLCQSLVIITKSKTLFGATNQLFNQPQTIEAAKLTGCKNIWPVKRIDAH RVQVIGWQQTLTVTQEVPISCHSIGIRAHDFTTEPQATNQIEVHHLQTLSAPFEQSAWFQ HQQTKIWWKGSNRLNPKVITQLSIPPTAIMPLCL >gi|307679287|gb|GL456440.1| GENE 333 330079 - 332181 2582 700 aa, chain + ## HITS:1 COG:BS_yvgW KEGG:ns NR:ns ## COG: BS_yvgW COG2217 # Protein_GI_number: 16080402 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Bacillus subtilis # 1 694 4 700 702 689 52.0 0 MQKSYKLEGLDCASCADKIEKSVQKIHGVEKARVDFMAEKMTLEVESGQDLEVENEARAV IGKLEPDVKVISLKDVKEEEGRNPNKNRLIRIIIAFVLFLALIIIKPSNNWVALASYLVV YVLIGGDIVKRAVTNIFRGEVFDENFLMSVATIGAFFIGEYPEAVAVMLFYQVGEWFQSA AVDQSRKSIAKLMDIRPDSANLLVNGQIKAVAPDTIEIGQQILVKPGEKVPLDGQIIDGS SMVDTSALTGESVPRTVKVGDEILGGFINKNGALTINVTKKFGDSTVSKILDLVENASSK KAPAENFISKFARYYTPVVVVLAILLAVIPPFIFPDTSINEWVYRALTFLVISCPCALVI SVPLSFFGGIGGASKLGVLIKGSNYLEILANTETIVFDKTGTLTKGNFVVQNITSVVLPE EELLRLTATAEQLSTHPIAISIKESYGKETVPATAIEEVAGHGIKATIEGKTVLVGNAKL MKQFGIEAPEVKEAGTLIFVAIDNQFAGYLVIADQLKPDAISAIKELKAEGVKQTVMLTG DNQQVAEAIAKEVGVDKVYAELLPDGKVDRLEELLKASSPKNKVAFVGDGMNDAPVLARA DVGIAMGGLGSDAAIEAADVVIMNDEPSRIASAIKLSRKTLRIVKQNIIFAIAVKIIVLV LGALGLASMQAAVFADVGVTIIAVLNAMRCLRVEKMKDNN >gi|307679287|gb|GL456440.1| GENE 334 332450 - 332893 572 147 aa, chain + ## HITS:1 COG:no KEGG:EF1402 NR:ns ## KEGG: EF1402 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 147 1 147 147 190 100.0 1e-47 MASNEKTRYKAIIADHTYTIIGQESKQHMDLVTKIVNEQLAEIKHLSPQTDTEQASVLLA INAISDQLKKQEYALKLEKQVADLKQKTIRLAELENRVRRMEIIEEEARDVLKKNGQEDV EIHNHVEAQQILNENRKQQIQNKGVSE >gi|307679287|gb|GL456440.1| GENE 335 332913 - 333461 456 182 aa, chain + ## HITS:1 COG:BH3108 KEGG:ns NR:ns ## COG: BH3108 COG1286 # Protein_GI_number: 15615670 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, required for colicin V production # Organism: Bacillus halodurans # 1 177 1 175 179 105 33.0 5e-23 MLTILILLLLAFGFYTGAKRGLILQVLYSVGYLISYFVARTYYKEVASHLELYIPYPSVT PTSKLVFFNQEISLDLDKAFYSAVAFLLLLFAGWLVVRFLAIFLHGLTFIPVLKQVNGLL GGVLSVLVLYVGLFLVLATASMIPSDIVQNQFRSSGLARGIVKNTPILTKQAYELWVEPI TK >gi|307679287|gb|GL456440.1| GENE 336 333572 - 335938 3051 788 aa, chain + ## HITS:1 COG:lin1195 KEGG:ns NR:ns ## COG: lin1195 COG1193 # Protein_GI_number: 16800264 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Listeria innocua # 1 788 1 785 785 729 53.0 0 MNQRILSTLGFDKVKQQLLQFIVTAQGTNEVSELLPIADENKIQAWLNETQDGLKVHRLR GGIPIPKLENIQPHMKRIEIGADLNGIELAQVGRVLSTTSELTRFFDELSENEVDFERLY MWREQLEVLPELNRQLKQAIDDDGYVTDEASPALKAIRQNIRRSEQTIREELDSIIRGKN ARYLSDALVTMRNERYVIPVKQEYKNIFGGVVHDQSASGQTLFIEPKQILEMNNRLRQQQ IAERNEITRILAELSAELVPYRREITHNAYVIGKLDFINAKARLGKELKAVVPEISQANH VVFKQARHPLLDPEKAVANDIVIGEEYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPI PVEEESKMGIFTEVFADIGDEQSIEQSLSTFSSHMTNIVSVLKKVDHQSLVLFDELGAGT DPQEGAALAIAILDSLGAKGAYVMATTHYPELKVYGYNRAGTINASMEFDVDTLSPTYRL LIGVPGRSNAFEISKRLGLDNSIIEAAKQIMDGESQDLNEMIEDLENRRKMAETEYLEAR HYVDESAALHKELKEAYQVFFEEREKELQKARKEANKIIAEAEENAETIISDIRKMQLES GQQGGVKEHQLIDAKTQLSQLHHEETKLAKNKVLKKAKEQKKLKAGDEVIVNTYGQRGTL LKDNGKGQWQVQLGILKMNVSEEDMTPVAPQKEAKPRVTTVRSAESSHVGTQLDLRGKRY EEALAEVDQYIDAAILAGYPQVTIVHGKGTGALRTGITEFLKNHRSVKSYEFAPQNQGGN GATVVKFQ >gi|307679287|gb|GL456440.1| GENE 337 336036 - 336350 534 104 aa, chain + ## HITS:1 COG:SPy1835 KEGG:ns NR:ns ## COG: SPy1835 COG0526 # Protein_GI_number: 15675662 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Streptococcus pyogenes M1 GAS # 1 102 1 102 104 149 74.0 1e-36 MTQAITDKDFATETDEGLVLIDFWATWCGPCRMQAPILEQLSEEYDEDEVKIVKMDVDEN PATPASFGIMSIPTLLLKKDGEVVEKAVGVHTKDQLQAMIAKHL >gi|307679287|gb|GL456440.1| GENE 338 336515 - 338311 1736 598 aa, chain + ## HITS:1 COG:lin1197 KEGG:ns NR:ns ## COG: lin1197 COG0322 # Protein_GI_number: 16800266 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Listeria innocua # 2 588 3 590 603 855 71.0 0 MNERIKNKLALLPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFRGSHDTKTERLVSEI DDFEYIVTESNIEALLLEINLIHKNNPKYNIMLKDDKTYPFIKITNEKYPRLMITRKVLK DKALYFGPYPDVNAANETKKLLDRLFPLRKCNPSQKTPCLYYHLGQCLCPYAFDVDPQVY KDMVEEIKGFLSGGHTEIQDRLQEKMAYAAAHMEFEKAAEFRDQIKAIETVMTRQKMTNV DLIDRDVFGYAVDKGWMCVQVFFVRQGKLIERDVSIFPFYDDASEAFLTFIGQFYQENEH FVPKEVLIPDDIDKESVEALLATKVLQPQRGEKKKLVKLASKNAAVALNEKFDLIVRKQE RTIGAVEKLGNAMNIPAPIRIEAFDNSNIMGTNPVSAMVVFIDGRPAKNEYRKYKIKTVQ GPDDYASMREVIYRRYSRVLKEGLPFPDLILIDGGKGQVDVAKDVLANQLGVDIPVAGLA KNDKHKTSELLFGPNLEVVPLERNSQEFFLLQRIQDEVHRFAITFHRQLRSKNSFASKLD NIEGLGPKRKKNLLKEFKSLKNITAASVEELRKAGLPETVAKNVYRHLHQETTSEIEK >gi|307679287|gb|GL456440.1| GENE 339 338463 - 338720 244 85 aa, chain + ## HITS:1 COG:no KEGG:EF1407 NR:ns ## KEGG: EF1407 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 85 1 85 85 155 94.0 6e-37 MKMLTPVYQIKFKKVSNQLLIDERLMNELGTWLNRTGRIWACQSSKSAKEFKNTFYESTG LTANEVHISAETDGLFRLAENKASD >gi|307679287|gb|GL456440.1| GENE 340 338825 - 339724 276 299 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 2 290 5 298 311 110 26 6e-23 MLEVKELVKTFGDFKAVDHVSFTIPDGKILGLIGQNGAGKTTTFRLILNFLTQDSGSVLW NGQPLNEKEYNIIGYLPEERGLYPKITIEDQLIYFASLRGKTKKEIEPKIDFWMEKFQVK GKKTDKVKSLSKGNQQKVQLIATLIHEPKLIILDEPFSGLDPVNAELLKDGIIELKNQGS CVIFSSHNMDNVEKICDHLVMLKNGRMVLDGQVHEIRQQFGRTKLFLESPLSVEEVAATA GVKEAHLRQDGVLEATLENAEVGKVLFDKATANGYIPMFNQQPPTLEEIFKMKVGGQDE >gi|307679287|gb|GL456440.1| GENE 341 339717 - 340979 1153 420 aa, chain + ## HITS:1 COG:SP1716 KEGG:ns NR:ns ## COG: SP1716 COG1668 # Protein_GI_number: 15901550 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: ABC-type Na+ efflux pump, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 411 1 397 399 202 32.0 9e-52 MSKFWIIATDVYKKNVKSLSFLIMILAPFLLVGIVYLAGSLASGFSGDTTIGLVSENQAL VKELTKNKTEDFSFKAVSSEKNAQEQLKDEKIDAYLLLDTTDNQISGQLYSERSLGNATE MLIPQMLNQLQTMANANRLNLTAEQVAMLNQQATFKKAKISFDENGKIKTGEDNTGIQMA LAMGITILLFVFISSYSSIIAQEIASEKGTRIMEVILSSTKAQTHFYGKLTGVILVALTQ IFIYGVAFVLGYSQLKNLDFMKSLLSGISPQSIFSSTFIFTLGFFIIGILVFAVLAALCG SLVSKPEDTAKAVQPIMYIGLIGYMIGITFGTNDPQNIVVKVTSFIPLISSYIMPVRLAT ETASTMEAIVSLVILAVFGIILTIFSARLYKSNVLVYSEGGMIQSLKQSISILKNEQKHK >gi|307679287|gb|GL456440.1| GENE 342 341015 - 342013 1023 332 aa, chain - ## HITS:1 COG:lin0539 KEGG:ns NR:ns ## COG: lin0539 COG1609 # Protein_GI_number: 16799614 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 321 1 321 322 265 42.0 7e-71 MTSIIDVAKVAGVSKSTVSRLISGKGYVSADSQEKILKAMKELNYTPNYVARNLRAGATK TIGFLAPSYLGSLGIFLNRFISIAKKYNYSVTLFFTDGDHQKEIDALNQLKYKQLDGLFL LTRTNEWSVIEPYSAYGPLATWHRIDSPNIYSSYIDHYSGYYRSLEYLQQQGYQKIGHVL GNPENLNTHARKRAMKDFYENTQAPWQAEWLINDQYTNHSGRKIAHYWQQLTDKPEALAF YNDHVAAEFISELENLNYAVPRDVAVIGFDNSYVSELMHITTVDYAIQYQAENSFIYLYN QLNQTNIPEKKLTVRLVERRTVPKKDPANQSL >gi|307679287|gb|GL456440.1| GENE 343 342155 - 343549 1693 464 aa, chain + ## HITS:1 COG:lin0540 KEGG:ns NR:ns ## COG: lin0540 COG1486 # Protein_GI_number: 16799615 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases # Organism: Listeria innocua # 1 440 1 439 440 629 67.0 1e-180 MTRGALKIATIGGGSSYTPELIEGYIKRKDELPIKEIWLVDIEAGKEKLEIVGAMAKRMI KAAGLDWEVHLTLDREAALKGADFVSTQFRVGLLDARIKDERIPLSHGVLGQETNGAGGM FKAFRTIPVILAIIDDMKRLCPDAWLVNFTNPAGMVTEAAIKHGGWKKTVGLCNVPIGHR KQAAEMLGIPEEDLFFKFAGINHFHWHRVWDKEGQERTQELIDLIYGPKQEQESHLKNIF DAPFHYEQLKDLGMLPCGYHRYYYIEDEMLKHSIEEYERGETRAQVVKETEGRLFELYKD PKLDYKPKELEERGGTHYSDAACEMIASIYNDKRTDMVVSTENNGTITDLPYDCVVEVSG PVTAHGHEPYNWGAFPPAARGIIQNMKAMEETVIRAAINGDYGAALHAFTINPLVPGGVM AKTLLDELLIAHKAHLPNFADAINKIEETQPETVTYVAELMKSN >gi|307679287|gb|GL456440.1| GENE 344 343575 - 344009 538 144 aa, chain - ## HITS:1 COG:no KEGG:EF1412 NR:ns ## KEGG: EF1412 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 144 1 144 144 240 99.0 1e-62 MKITLTRKTSAWGALRYFTFYKNGVHQGKLFTNVPIEIEADPGDVLTFYEGWFQFYRRIE VTEDTKEITIINSKKLQHVFYTCVVLFLILTLLFLSAQKLSTFIIAEILIYSGIQWLFRQ QTYHFTVKKKTEPFASYSKKSIAH >gi|307679287|gb|GL456440.1| GENE 345 344297 - 345793 1153 498 aa, chain + ## HITS:1 COG:BH1900 KEGG:ns NR:ns ## COG: BH1900 COG0488 # Protein_GI_number: 15614463 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Bacillus halodurans # 20 497 2 478 538 277 35.0 3e-74 MRTQDSFVSEMKEEGKMKKLSIHLKEVSIHFSGKPILEIDELFVYENEKIGIIGKNGAGK STLLNLIMGKIQSDKGKVQRLNDFHYLAQVAEEITNESEKADKNCLLNQKNQKLSGGEKV QKRLATLFSEYPTGVILDEPTTHLDKEHRHLLVADLTYYYGTVLFVSHDRFFLNQLAEKI WEVSDGHVKEYLGNYDAYCRQKELEQQTRYNVYHQYQKEKKKLQESYTKKQAQAQKSSHV SKKQKQKQIKPSRLAGSKQKDTVQKALQKQAKAINARIDRLPDVAQAKQKRKIIFPTNNQ FSLYNPYPIRIENLTFAYENRTILNQVNVQIPLNEKIALCGKNGAGKSTFLQQIKARHPA IYFSPKVRLGTYHQLDYRLKNDEPLLTYLLKRTNYSEKIVRSLLYRLGFQQENLQTKISS LSGGEAIKITLAQLFIEPNNIILLDEPTNFLDLDTIQALEEFISAYQGTVIFTSHDETFV EKVATRTIYLENGKIIDK >gi|307679287|gb|GL456440.1| GENE 346 345834 - 347120 1165 428 aa, chain - ## HITS:1 COG:L56208 KEGG:ns NR:ns ## COG: L56208 COG2081 # Protein_GI_number: 15672240 # Func_class: R General function prediction only # Function: Predicted flavoproteins # Organism: Lactococcus lactis # 2 420 6 422 423 520 62.0 1e-147 MKKFDVIIVGAGTSGMMATIAAAEAGAQVLLIEKNRRVGKKLLMTGGGRCNVTNNRPAEE IISFIPGNGKFLYSAFSQFDNYDIMNFFESNGIHLKEEDHGRMFPVTDKSKSIVDALFNR INELGVTVFTKTQVTKLLRKDDQIIGVETELEKIYAPCVVLTTGGRTYPSTGATGDGYKL AKKMGHTISPLYPTESPIISEEPFILDKTLQGLSLQDVNLTVLNQKGKPLVNHQMDMLFT HFGISGPAALRCSSFINQELTRNGNQPVTVALDVFPTKSFEEVLKNVDYMIEEQPNKVAK NAFHSLIPERLLTFYLEKLAIEEVPAKQLTEKQRLSFVELLKDFQFTVTKTLPLEKSFVT GGGISLKEVTPKTMESKLVNGLFFAGELLDINGYTGGYNVTAAFVTGHVAGSHAAEIAEY TYLPIEEV >gi|307679287|gb|GL456440.1| GENE 347 347258 - 348604 1730 448 aa, chain + ## HITS:1 COG:lin0569 KEGG:ns NR:ns ## COG: lin0569 COG0334 # Protein_GI_number: 16799644 # Func_class: E Amino acid transport and metabolism # Function: Glutamate dehydrogenase/leucine dehydrogenase # Organism: Listeria innocua # 3 448 14 458 458 552 65.0 1e-157 MDAEQYVKNIQEKIHQLDQGQTEYLQAVDEFLPTVEGFLEKNPQYIEANVLGVLIEPERI FQFRVPWQDDQGNWHVNRGYRVQYNSAIGPYKGGLRVHPSVNLSVMKFLAFEQIFKNSLT GLPIGGGKGGSDFDPKGKSDAEVMRFCQSFMTELQKHIGPSTDVPAGDIGVGAREIGYLF GMYKRLRNYDAGVLTGKPLGYWGSQARTEATGYGTVYFVKHLLADKNDTFEGKKVAVSGS GNVAIYAMEKAIELGATVITCSDSSGFVYDPEGIDVALVKELKEKNRERISKYVETRKGA TYYDKESVWDFETAYDIALPCATQNEINKKQAAILVKNGVKVVAEGANMPCTLEAVAVFA KSAVIYCPGKAANAGGVAVSALEMSQNAERLAWSFEKVDGMLDQIMQNIYETCRDTANEY QARDNFVLGANIAGFEKVAAAMLSQGLV >gi|307679287|gb|GL456440.1| GENE 348 348786 - 350135 1882 449 aa, chain + ## HITS:1 COG:SP2070 KEGG:ns NR:ns ## COG: SP2070 COG0166 # Protein_GI_number: 15901889 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate isomerase # Organism: Streptococcus pneumoniae TIGR4 # 1 449 1 449 449 684 74.0 0 MSHIQLDYSKLAPFVADHELEYMQTQVTAVDKALREGTGAGNDFTGWIDLPENYDKEEFA RIKKAAAKIQSDSEVLVVIGIGGSYLGARAAIEFLTHSFNNLLSKEERKAPQIFFAGNSI SSTYLADLINVIGDRDFSVNVISKSGTTTEPAIAFRVFKELLINKYGKEEANKRIYATTD RAKGAVKVEADAEGWETFVIPDDVGGRFTVLTPVGLLPIAVSGADIDRLMEGANDARKEY GATSDLKENQAYQYAALRNILYRKGKTTEMLINYEPGMHYFSEWWKQLYGESEGKDGKGI FPAAADFSTDLHSMGQYVQEGMRNLFETVVKIENPRHSISIPEQNEDLDGLGYLQGKEID FVNTKAFEGTLLAHTDGGVPNMIVKVPTMDAYSLGYVMYFFEIAVGISGYLNGVNPFDQP GVEAYKRNMFALLGKPGFEELAKDLNARL >gi|307679287|gb|GL456440.1| GENE 349 350247 - 351473 768 408 aa, chain - ## HITS:1 COG:L48477 KEGG:ns NR:ns ## COG: L48477 COG0582 # Protein_GI_number: 15672029 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Lactococcus lactis # 3 397 2 389 394 100 27.0 5e-21 MASIKSYTLKNGQERWEYFVSNGRSNGTGRQQKIHKRGFRSHKEALKAAKIIEGQIASEE FVKENPQKMTISKFMNIWINEYKNNVKEGSRIVYRDAIRMYIDPYIGNYQLNKYKPADHQ KFINSLFTNKELGKNKNGLSYNTVKIVNAALSNAFKKAQKLGYVKSNPTYLVEFPLDKVK EKNNKEKKLEFYTLEQENLFLDTARNFDEYMWYVFFLIIFDLGLRKGEVMALRWFNFDFR DNILTFDKQRLYRKERPGQVILDDVKTDAGKRSLKMTNRVRNSVLELYGINYDLTNNVLP MTKSNKDFLFINNRGKNVGLPIRQRSVDTAWHRIINKAQLPKIRIHDGRHTNAARLRQAG VPLEDIKDMLGHKNVKTTEIYAHVSAEVKERAVNKLELYQMQNKKSGN >gi|307679287|gb|GL456440.1| GENE 350 351987 - 353555 1037 522 aa, chain - ## HITS:1 COG:no KEGG:Gura_0550 NR:ns ## KEGG: Gura_0550 # Name: not_defined # Def: hypothetical protein # Organism: G.uraniumreducens # Pathway: not_defined # 1 522 1 523 537 274 35.0 7e-72 MDNFLTPLLNKADSMPFLFLGSGFSRRYLNTPTWEELLKHIAQITYQNNTGFQKAKRKAS KLYDENLAYNKHMTYLCDLISDDLDEIWYDDPRFEENRNRYWDLVENDSTPPVKIEIACY LEKFQKFTEENILELDALKKITPNSIAGIITTNYDTLQEQLFDYEVYSSQEELLFHTKYD IGEIYKIHGCIKNPNSILINSDDYKQIELKHKYIAAKLLTIFVEHPIFFLGYSLGDEDIR NILNDIQISLTSKQLKEIEDRLFYVVWDESQEHFSHSTHSINFDNGRSITIKQISLNDYS FLYNALSKNKSRYPVKMLRHVKEDMYNLVLTNDPTERMLLTIPDKELSKEEMEKIEFVYG FGIMERARNGYKIVSTEEIYKDAVFDTANLNPELFVKETLTYALQKSSGYIPIRKYTSQV EYSSLPKQVKDNLKRFNKIDDLLSQKLIGYKRSLTVPPTFNDALKSPSKMIYDNLSIVSY NSNNIELLGDYLKNILDKDEFTTTTEIRRLIRIYDYFKYKKS >gi|307679287|gb|GL456440.1| GENE 351 353628 - 354224 556 198 aa, chain - ## HITS:1 COG:no KEGG:LMHCC_1411 NR:ns ## KEGG: LMHCC_1411 # Name: not_defined # Def: GP35 # Organism: L.monocytogenes_HCC23 # Pathway: not_defined # 14 196 15 203 204 121 38.0 2e-26 MKKSIFLGLIVASALSLGACSSNKEDATQGSAKLRTSSKSEESSTLTQEEKIPTVNRAEY NVSFSEDWQGLKTSISKVVIAELSKSEMENQKLENRYVAQVYFKIENTSDKDFNVYPDQG TLVIEGQQIDADMWFSDDLGGEILHGVTKEGLVTFSIPKISNVDNVPNIRLIWRANFDTD NYNEESSKDFDVSFDLTK >gi|307679287|gb|GL456440.1| GENE 352 354252 - 354716 422 154 aa, chain - ## HITS:1 COG:no KEGG:EF1421 NR:ns ## KEGG: EF1421 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 154 1 154 154 317 98.0 7e-86 MVTSEELMARFSDLTYKFEPNMPEKQKGLYINNVVYLNPQQHPRELTSTVAEEIGHHLTS VGDIIDQDTNEKRKQEQKARDIGATMVVTPQDLINCYHERFTYVWECADFLGITKQALEC ALAAYSKQFPEGLVYGDYKLFFKPNGTLGIVKWF >gi|307679287|gb|GL456440.1| GENE 353 354737 - 355060 408 107 aa, chain - ## HITS:1 COG:lin1234 KEGG:ns NR:ns ## COG: lin1234 COG1396 # Protein_GI_number: 16800303 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 1 83 1 81 142 84 55.0 5e-17 MFGTRLTELRKQKKLTQTDVANALGVARTTYSSYEQGRRTPDIDIQNKIADYFNVSLDYL HGRESFEDTSLSKKQLTVAAHIDDDVSDTEMNEILSFIDYIKKRDHK >gi|307679287|gb|GL456440.1| GENE 354 355226 - 355411 103 61 aa, chain + ## HITS:1 COG:lin1235 KEGG:ns NR:ns ## COG: lin1235 COG1396 # Protein_GI_number: 16800304 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 3 60 2 59 61 69 63.0 1e-12 MRDWLLKLRIKNKMTQEEVAVKAEISRTTYASIEQGRRRPSVESAMRIASILDFDWTIFF E >gi|307679287|gb|GL456440.1| GENE 355 355457 - 355603 206 48 aa, chain + ## HITS:1 COG:no KEGG:EF1424 NR:ns ## KEGG: EF1424 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 48 1 48 48 65 97.0 9e-10 MPEKQKMIDFILEIMPNVKLIVELATDDQLIRLYEQAQDKLNYQLDLI >gi|307679287|gb|GL456440.1| GENE 356 355666 - 356226 381 186 aa, chain + ## HITS:1 COG:no KEGG:EF1425 NR:ns ## KEGG: EF1425 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 186 1 186 186 339 99.0 3e-92 MSMSVILRKSLIEVLNKKNEKKKDVAREISTSQQSLSDWTSQNNVKPVTIENALRLSDHF RDSTFTMEVIHQFFGMFKTCDGDVYRKDPSSLDRLQKIESNERKALKHDIERIILKNPEY LSEQDISKIVAYANEYLDEVIVEITLLSSLCDLASIDIRYLSEQRFPYWEQLGYMRKENT NGTRSY >gi|307679287|gb|GL456440.1| GENE 357 356207 - 356437 255 76 aa, chain + ## HITS:1 COG:no KEGG:EF1426 NR:ns ## KEGG: EF1426 # Name: not_defined # Def: VrlI protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 76 1 76 76 126 100.0 2e-28 MALEVIDFKSKKDRKVNSKKIPPLKAIEVAKRKNVSAATVTRWMKREIDPLPAKRNGGLV RIEVDDLEEWYERNFI >gi|307679287|gb|GL456440.1| GENE 358 356448 - 356615 222 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307291414|ref|ZP_07571298.1| ## NR: gi|307291414|ref|ZP_07571298.1| hypothetical protein HMPREF9509_01723 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9509_01723 [Enterococcus faecalis TX0411] # 1 55 11 65 65 70 100.0 4e-11 MNNKEFVIKAMLLITLGILLFVFVMCLSRLEFFTATMIALVAMVIRVLWTNIGGK >gi|307679287|gb|GL456440.1| GENE 359 356616 - 356846 304 76 aa, chain + ## HITS:1 COG:no KEGG:EF1428 NR:ns ## KEGG: EF1428 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 76 1 71 71 107 80.0 2e-22 MKRRKLKSLYEVRISGAFIVVFILGLIIKNSVPASYLSLIIGPISVVWFMKYDDAKYDNA KYLAYTKKGTHSSTND >gi|307679287|gb|GL456440.1| GENE 360 356902 - 357192 355 96 aa, chain + ## HITS:1 COG:no KEGG:EF1429 NR:ns ## KEGG: EF1429 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 96 1 96 96 166 97.0 3e-40 MDNESNKLTMSKRFEEWFKNATENCAERELYTTALIARMDWLVDPIISKSYRYDLTTELN QNHSSAWYDVATEICNKRKETVIRAILEDNIEIEGD >gi|307679287|gb|GL456440.1| GENE 361 357197 - 359311 1575 704 aa, chain + ## HITS:1 COG:no KEGG:EF1430 NR:ns ## KEGG: EF1430 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 702 1 702 707 1128 97.0 0 MKNISLESIRIHNFKGISDLMIEPNGKSIDVFGDNDAGKTTIYDAFLWCLFNKDSKERTK IQWRPLDENSEPIRGKQTSVTVVLAINGQAKEFEKVRGDKEVIKRNSEHKSYEMFTKYLV DGLETTTKKAFDDEVEKVLDQDTFKNLTSVTYFCEQLVADERRQKLFEYFGSKTDEEIIN ETPSIQQLKEIIGNDDIKTARDRVLQDQKRINETLKNIPVKIEGIQAALPDIKNINKEQL LTTRNELTLKKNDIENQLVTIRNGGNISELIASLNTKQEELTAAKLKHDNAQNARINGIE QGKSKLFADLNKAQKTYADEESSLNVTERLVSIKDNELIALNKKHEELYDKYDEVEAEEF TGGLVYTKLSFNENLLICQHCNRPYDVKDQDEMKRHHEEEEQKRAEEIESTNKEIKAQFE ADKQIKLSEIREKGIKNNKDREALKKEIGELKEQLLIKTEAYNIAKKHLEDVKENLADVE QQISSLKLDKIPFEATEKYSTITKEIKKLQEYITQSNKAILEQTSAKTSEITEIDKEIAM IDEKLALLKEYERQLLIIEDFNEQERQLSHKKGEVLQKLVLFEEFFITKQNMLQEIINSH FSVVKWKLFDFFEDGGLNEAVCEPMIDGVPFSSLNNGSRMQAGLDVSNTLMKQEGYIVPI FIDNAEGLTNHNRDSVQVDTQVIAMYVNEDDKTLRIQDHKTEGK >gi|307679287|gb|GL456440.1| GENE 362 359312 - 360484 899 390 aa, chain + ## HITS:1 COG:no KEGG:EF1432 NR:ns ## KEGG: EF1432 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 390 1 395 395 590 82.0 1e-167 MTHELAENKIYGNRLTKINDTFMPQVESQLLSNGINMTEYQKQCVISAIQGINTMLTNSN LSINDVDSTNMTETLMTIAALQVNASAIPREVYFQTRNVNRKQFGQSDNWVKVIEMGIEG DGNDAILSKFGRNVKHVHRHWEVREEDHFSYPGYKGLSVTDPEWGPTGKGKVVRVVYPIE MSDGTIEYHIAEREDVVKNLIAHINQNLMNETFGIAKKKKDASYQQKQEIDNKKQEIMNN LKTMSLDDILDSQEYQSYISPAWKSPQSRESMIVRKMRNNIVKKIPKNFENAYVAMQYQS QDDEVVKSVRKDVTEQTAQEVFDFDEEPSEATQETMKHDKETTADTTIIVPEELAKEPVT SHEKDNEPTQTAFFDDLTTNITSDTDGRGF >gi|307679287|gb|GL456440.1| GENE 363 360484 - 361185 461 233 aa, chain + ## HITS:1 COG:lin1243 KEGG:ns NR:ns ## COG: lin1243 COG1235 # Protein_GI_number: 16800312 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Listeria innocua # 2 232 22 252 252 159 34.0 5e-39 MIEINIQGSSSAGNNYLLADGNSSLMLEAGLKPKHIMKQGINFSNIQGLLVTHEHGDHSK YINDILLAGRFDVWASRGTLEGLGINRRSHILKANQQQKIGDWLVKPFATIHDDKKARAR EPLGFLILSPSGKKIVFATDTNYLPTTFKDVTHWLVECNHDIKLVRQSKLPKSVQDRILR THMSIDACKKFFQSTDLTKTEEIYLIHLSDKNSDPEKFKEEIEKITNKKIIIA >gi|307679287|gb|GL456440.1| GENE 364 361203 - 361961 401 252 aa, chain + ## HITS:1 COG:lin2009 KEGG:ns NR:ns ## COG: lin2009 COG3935 # Protein_GI_number: 16801075 # Func_class: L Replication, recombination and repair # Function: Putative primosome component and related proteins # Organism: Listeria innocua # 121 247 104 234 239 85 37.0 9e-17 MNYLQQILAFDDYLLYKQKLSSGQIALWRALMSINNKAGWATWFTAANATLESLSGLSRS GINKNRNALKQLGLIDFKSNGRKATSYKVCVLYTLNSAQESTQQSNDKVTLKSTTQSTNS GTLIKHKQNINTNNSFSPETDKNKLNIYAAVEQNFGRPLSPIEMEMIKQWQTEDGYPDDL IQLALKEAVLNQAFSLKYMDRILLSWERKGIKTKNQAIKKISEYNMRNDQEEISVDSIPK VTMHNWLNPEGN >gi|307679287|gb|GL456440.1| GENE 365 361977 - 362474 247 165 aa, chain + ## HITS:1 COG:BH3539 KEGG:ns NR:ns ## COG: BH3539 COG3331 # Protein_GI_number: 15616101 # Func_class: R General function prediction only # Function: Penicillin-binding protein-related factor A, putative recombinase # Organism: Bacillus halodurans # 7 141 12 146 168 74 33.0 9e-14 MKAWSQFEKMIEQTNEWYCRNRKGTVAKIPNGTKTIRVGGKPVVIPTNKTGCDFIGHLKG RPIAFDCKSTENKTAFPFCVGNKPMLKDHQKNFLKDFKLSGGTAFLLIQFNKSHQVFLVD VDDYLNMQKNLGRKSIPLDYLKEFEVRQHGYYSHYLEKLEQNYWQ >gi|307679287|gb|GL456440.1| GENE 366 362495 - 362809 124 104 aa, chain + ## HITS:1 COG:no KEGG:EF1436 NR:ns ## KEGG: EF1436 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 104 1 104 104 213 99.0 3e-54 MSIALPKQKHLRGPLLDYLRIAEDNGDLFAWRKACEIGREIFSGDFSDNAKPLIVIYKDG SSEVFNTRADVISACRIGNETLRKCLETGEQDRLGRCYDYAILE >gi|307679287|gb|GL456440.1| GENE 367 362893 - 363642 553 249 aa, chain + ## HITS:1 COG:no KEGG:EF1437 NR:ns ## KEGG: EF1437 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 249 1 249 249 469 98.0 1e-131 MGKNLLREKKRLIRQKILFLTGENESWMKNPEIVKEVQRLSKQLESDLIADKRPLPSLDP DKLTKEKYQHFLDLGYQVGDIKKALGLGTTTFQNWRKANGIENKINRKQKKEESKLMKFN INTASLLLPGTFGAEGKECITISKSGLALSGPVVRRLNKPEWVQLYLDESRLALFVIPCK ATDEGARSCVNPKSKKKAGYRKSWSGSILEKVSKASKMDIENHRYHVEPESVEGYPTALG FDLTKAVKN >gi|307679287|gb|GL456440.1| GENE 368 363667 - 363861 156 64 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315029941|gb|EFT41873.1| ## NR: gi|315029941|gb|EFT41873.1| hypothetical protein HMPREF9496_01041 [Enterococcus faecalis TX4000] # 1 64 1 64 64 90 98.0 3e-17 MKIIKIRIFINTGSFTMATFDTEIFAETFKNLTSILNDDKYKYKFVKIGDVIIKPVEITR IIKL >gi|307679287|gb|GL456440.1| GENE 369 363892 - 364119 252 75 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227553236|ref|ZP_03983285.1| ## NR: gi|227553236|ref|ZP_03983285.1| hypothetical protein HMPREF0346_0401 [Enterococcus faecalis HH22] hypothetical protein HMPREF9509_01734 [Enterococcus faecalis TX0411] hypothetical protein HMPREF0346_0401 [Enterococcus faecalis HH22] hypothetical protein HMPREF9509_01734 [Enterococcus faecalis TX0411] conserved hypothetical protein [Enterococcus faecalis TX0017] conserved hypothetical protein [Enterococcus faecalis TX0630] # 1 75 1 75 75 120 100.0 2e-26 MKFKNVELISKNGIDKKIESVDIDELTKEEYVMLRNLGLGDQLSHKTSMTLNEIEIKLDI FGKVSISQGFYVLIN >gi|307679287|gb|GL456440.1| GENE 370 364216 - 364974 535 252 aa, chain + ## HITS:1 COG:lin0088 KEGG:ns NR:ns ## COG: lin0088 COG0338 # Protein_GI_number: 16799166 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Listeria innocua # 1 252 14 265 270 365 67.0 1e-101 MSDLIISQMPKHKAYLEPFMGSLAVFLNKPRVTLETINDIDARLVNLFRVMRDDPEKLQY LIYHTLYSREEFIRSNEIAVDPVEDARRMAVRLWFGVGGKTVAMPGFRKNISWNGPYTAY EWTDMFNRIGYAAARLKNAQIECKDGIQLIKEHNDPDTLIYCDPPYIASSLVSDHYENGF TNHQHEELLTTLINHQGKVILSGYDSELYNSVLKNWNVIKQQTKVGITTKKKSNRTEVLW LNYEPNEQINLF >gi|307679287|gb|GL456440.1| GENE 371 364996 - 365223 132 75 aa, chain + ## HITS:1 COG:no KEGG:EF1439 NR:ns ## KEGG: EF1439 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 75 1 75 75 119 94.0 4e-26 MSYPNFQKESSTCANCGNALFNDGEFTNQSYLTIRDNFMIVNFFQFEDGTDNMFCDGNCL ASFLSAEEVEILESE >gi|307679287|gb|GL456440.1| GENE 372 365229 - 365627 326 132 aa, chain + ## HITS:1 COG:no KEGG:EF1440 NR:ns ## KEGG: EF1440 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 132 1 145 145 66 38.0 3e-10 MIPKFRAYSVEENVMYYPDEDKNVEWTIDDDTGFIAPLINLGNGMWGMIDKYVLMQSTGL KDKNGVEIFEGDLVYYIPFESHINNSVVVFEKGSFCTKMLRNGKLTSVRFIDSEEYEVIG NVWDNPELLEGN >gi|307679287|gb|GL456440.1| GENE 373 365628 - 365963 247 111 aa, chain + ## HITS:1 COG:no KEGG:EF1441 NR:ns ## KEGG: EF1441 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 111 1 112 112 100 57.0 2e-20 MHELIKEIERQLEMDRIEANMSAEDILYIVKGFKRPYLNENQQIVLDWLKANVEQDNASP MCAVFLLGEWQTRIGSKELRNVDIAYCGLNSKQQAQVLRAFADWIEQEETE >gi|307679287|gb|GL456440.1| GENE 374 365960 - 366283 442 107 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307291430|ref|ZP_07571314.1| ## NR: gi|307291430|ref|ZP_07571314.1| hypothetical protein HMPREF9509_01739 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9509_01739 [Enterococcus faecalis TX0411] # 1 107 1 107 107 146 100.0 6e-34 MKLYRYESSQNTGRWTESLIQATKEFEEEKDYLMADDPEEDETVKLVSIEVPDDLIDELE DESKEVKQAVLMHDPDCLDENPRDDGWDFDYYAAWSDDVEKRKEEVK >gi|307679287|gb|GL456440.1| GENE 375 366280 - 366447 207 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307291431|ref|ZP_07571315.1| ## NR: gi|307291431|ref|ZP_07571315.1| hypothetical protein HMPREF9509_01740 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9509_01740 [Enterococcus faecalis TX0411] # 1 55 1 55 55 90 100.0 4e-17 MKQLKISYIDLAVIIESIYYGEDEDVSDIDDLLKYLRNNGHLSTVLTVSRGISGE >gi|307679287|gb|GL456440.1| GENE 376 366440 - 367054 660 204 aa, chain + ## HITS:1 COG:no KEGG:EF1443 NR:ns ## KEGG: EF1443 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 129 1 129 195 189 74.0 9e-47 MNKQEKEDLIQALYDIGGCEAEDEWTRGYDDGVNAAIEVIKELKVHGKVIFSHEEKFVAD WLNDLRGQISNVKLNSGAVFMTFIGRQLERYYDKEYSFLTEKIESWLTVPKNKVKLMSAI DNGYEVKEEPTIHELKILPEYFEAVVSGNKRFEIRENDRNYQKGDILRLNEYQDGQYTGD VHVAEITYITDYAQQDGYVVLGIK >gi|307679287|gb|GL456440.1| GENE 377 367067 - 367552 287 161 aa, chain + ## HITS:1 COG:no KEGG:EF1444 NR:ns ## KEGG: EF1444 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 161 1 161 161 306 96.0 2e-82 MKTDLTRQAEKCLWHYTNKMGVFGCFEVTIGWFGKERVDFVTYSTDNTIRCYEIKVTLAD LKSSAKQTFLGDYNYLVVTNELWEKIQANPDLKWKYSNQGILIFSELKHNLGITSVKKAK KQNVTLGTRATVLESMVRSLNREVEKFYKVNPFWGLSEEVK >gi|307679287|gb|GL456440.1| GENE 378 367553 - 367870 492 105 aa, chain + ## HITS:1 COG:no KEGG:EF1445 NR:ns ## KEGG: EF1445 # Name: not_defined # Def: replicase domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 105 1 105 105 174 94.0 1e-42 MKIIAKGRGTGKTTELVKESARTGQYILAANKSHVRAIEQIAKKAGITIPYPVTVDEIVS MDRFTCASSIQREGLLVDEAIMVLSKLIGLKITGVTISLEGEQQC >gi|307679287|gb|GL456440.1| GENE 379 367864 - 368070 301 68 aa, chain + ## HITS:1 COG:no KEGG:EF1446 NR:ns ## KEGG: EF1446 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 68 1 68 68 132 95.0 6e-30 MLSYPDVYILGRQVDGVYVEYLHGSEQADLFFDYTIARDERNHMNKTNMKDGAWEILKYG SPITLKEN >gi|307679287|gb|GL456440.1| GENE 380 368071 - 368250 145 59 aa, chain + ## HITS:1 COG:no KEGG:EF1447 NR:ns ## KEGG: EF1447 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 59 1 59 59 98 100.0 7e-20 MKTAEEEINELLGKYNFDLAVLKDINYRLSCCREEAYARQQLRYLKNQIIMGFATEKKK >gi|307679287|gb|GL456440.1| GENE 381 368283 - 368375 153 30 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGKKKSKIKKKKRRLQEKAMANGTINMKKK >gi|307679287|gb|GL456440.1| GENE 382 368391 - 368570 136 59 aa, chain + ## HITS:1 COG:no KEGG:EF1449 NR:ns ## KEGG: EF1449 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 59 1 59 59 103 100.0 2e-21 MDFKPAKLSELENFDGKHVIILVSNGQTKVADLPEHGIVEVISHAGKVTFIEQKIKEKF >gi|307679287|gb|GL456440.1| GENE 383 368671 - 369255 501 194 aa, chain + ## HITS:1 COG:no KEGG:EF1450 NR:ns ## KEGG: EF1450 # Name: not_defined # Def: positive control factor, putative # Organism: E.faecalis # Pathway: not_defined # 1 194 1 194 194 313 98.0 3e-84 MLDQHGREILIQEYKSDLKDASRQHRRIAKKKYQIEKNGRLETIDDRTAEDIKEQSIYAE IISSTKYALYWLEHGIERPLDEEAAKKIPKYRRAKHITNMDKISYEIYCNQYESARNYPI TEEKQEMLIQLKELLSTFSERERDLFDYIHNQQLTYAEAAEKMDIKVGTAKSMSQRIRNK IDAYFEYGHQISLF >gi|307679287|gb|GL456440.1| GENE 384 369690 - 369893 107 67 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293382336|ref|ZP_06628275.1| ## NR: gi|293382336|ref|ZP_06628275.1| conserved hypothetical protein [Enterococcus faecalis R712] conserved hypothetical protein [Enterococcus faecalis S613] hypothetical protein HMPREF9492_01743 [Enterococcus faecalis DAPTO 512] hypothetical protein HMPREF9493_01114 [Enterococcus faecalis DAPTO 516] conserved hypothetical protein [Enterococcus faecalis R712] conserved hypothetical protein [Enterococcus faecalis S613] hypothetical protein HMPREF9492_01743 [Enterococcus faecalis DAPTO 512] hypothetical protein HMPREF9493_01114 [Enterococcus faecalis DAPTO 516] # 1 62 1 62 80 84 66.0 3e-15 MNYWYISLSKNYPPKITREVKLNRDFAIVECIRPVSKKMSRKLDLIYIGYGFFKDYHIQN NFKSHIP >gi|307679287|gb|GL456440.1| GENE 385 369995 - 370264 371 89 aa, chain + ## HITS:1 COG:no KEGG:EF1451 NR:ns ## KEGG: EF1451 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 89 1 89 89 126 96.0 2e-28 MKQFGNENYTVVINEQEINVILENNDSVSINFVNMPNQENTYILSINPKAYTELGIDEYQ KLLERYKEAEIAAIEIKNCLEQEYLLTII >gi|307679287|gb|GL456440.1| GENE 386 370309 - 371577 1092 422 aa, chain + ## HITS:1 COG:BH3535_2 KEGG:ns NR:ns ## COG: BH3535_2 COG0863 # Protein_GI_number: 15616097 # Func_class: L Replication, recombination and repair # Function: DNA modification methylase # Organism: Bacillus halodurans # 159 415 3 285 292 205 39.0 2e-52 MQIEKMKLSDLKAADYNPRVDLKPGMQEYEKLKQSILEFGFVDPPIYNIQTGNLVGGHQR VAVAKELGLFNEIEVSVVDLPLDKEKALNVALNKISGRWDEEKLSVILNELDDEAVNLTG FDTEEVDSLLASFNYEEDIEKPIIEDDFQVNEFIENHPEANTKMGQLWKLGNHYLLCGDA TKLSDVEKLLQGKKANLVVTDPPYNVAVKSDNKELNESGREKIMNDDMSDEEFDQFLMSV FQNYSNAMRDDSAIYVFHGSSYQREFENSMNAAGIFVRSQCIWVKNNATFGWSQYRWQHE PVFYAHKKKQAPAWYGDRKQTTVWQDDLLEDLPATIWKVPRDDVATYYHPTQKPLSLIAI PVRNSSKRQDIVLDLFGGSGSTLMTCEQLNRICYTLELDPLFCDVIIERFEKSTGIIAEL VE >gi|307679287|gb|GL456440.1| GENE 387 371721 - 371933 273 70 aa, chain + ## HITS:1 COG:no KEGG:EF1453 NR:ns ## KEGG: EF1453 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 70 7 76 76 103 100.0 3e-21 MGTKEEHEKIDILDLELEKEFEDAEDYEQYRKIIRATMAQWLKNLKNGEIKLTSVSDLKT LIEADKILRS >gi|307679287|gb|GL456440.1| GENE 388 371948 - 372673 344 241 aa, chain + ## HITS:1 COG:no KEGG:EF1454 NR:ns ## KEGG: EF1454 # Name: not_defined # Def: terminase, small subunit, internal deletion # Organism: E.faecalis # Pathway: not_defined # 1 241 1 241 241 382 97.0 1e-105 MARSGKEPSNKKKERYDLFVDCYLQTFNATQSAIKVGYSQKTARQQGHKLLTNAYIKEKI QLEMKRLRDRMKDEGLRSFSMLLDIAMQTEGKIQAHNEAEIAIDKIKSELNDLELEMLKA NNDLEKVQKAADAIDGRKKEMRSHKRSLLEQIDSIKKEYFELNLERVVLLNELSKHQSRY LDAKEWEKLQNLKKSIFQDILDRGGFKAIDQIQHSGKVDVNPLANLSEEELRRLANGPRA T >gi|307679287|gb|GL456440.1| GENE 389 372654 - 374090 1226 478 aa, chain + ## HITS:1 COG:lin1732_1 KEGG:ns NR:ns ## COG: lin1732_1 COG5410 # Protein_GI_number: 16800800 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 2 304 8 310 310 368 58.0 1e-101 MDQEQLDALANAALEELARRNYGDFFYLSHGKQWDLLRHQKYITDRLQKIIDGEQKYYII EIPPQHGKSTVITETFPAYYLMRHPDSLVMVVSYSKELFQKFGRKNREKFRLFSDQLFGL QISSETSSVSEWGVEGHLGSLYSTSILGGATGRGARLLIIDDPIKNRAEAESKTIRDKIY NEWQDTFYSRLTADASVIVIMTRWHEDDLAGRLLKEQTLPWEEIKIPAIAEENDLLGRKP GEALAPEIGKDEEWAAKTKAVTGSRGWAALYQQRPTPAGGNIFKRSWIKFYVPTLSKKIE LSLGDDVVILPRLFDRQAQSWDCTFKDTETSDYVSGQVWGKKRADFYLLDRHHERMGIVE TMKAIKIMCNKWPKARGIYIEDKANGTAVIEMLKKKISGIVPVTPDGGKEVRANAVAPLW EAGNIYLPHPLICPWVNDFIDELVAFPNAEHDDDVDSMTQLLNKMVSKVSLRERYLDN >gi|307679287|gb|GL456440.1| GENE 390 374113 - 375507 790 464 aa, chain + ## HITS:1 COG:lin1731 KEGG:ns NR:ns ## COG: lin1731 COG3567 # Protein_GI_number: 16800799 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 6 458 5 456 461 512 56.0 1e-145 MGNIANEANLLKLDGKAYRSDFMLGNGKGHARDNLSRQRPGMSKRLSHSQLESLYSSNSM AKNIVDIPAEDLTRNGWSLKMQDDKVKALYESKLRQLKAKERLQQLFTYERLYGDGFVSI GTIEKREYSLSEPLDFENIKSVPYINAFSGKKISNRIIDEDVFSPHYGQIESFEVNNRSN NSRIQLLNNTTYSTATKIHRSRVLHQQNLRFEDELEGSSLLENLYDILTVADTSVWSVGQ ILYDFIFKVYKSSDVRSLTAAEKAEIAMKMDYKFRTEALAIIDSEESLGKESSPVSGIGE LLDFVWDYLAGAARMPKTVLKGQEGGTVTGAQYDVMNYYSRITAIQENQLRPHLEYLMRC LMWAEDECGGRLDPDSIEWSVEFNPLWNVDSKTDAEIRKLTAETDKIYIEAGVSDPDDVH EARFGRFGITETSKFNADSLSRDELDKMAAVVYENYKQDRDNEK >gi|307679287|gb|GL456440.1| GENE 391 375497 - 376741 901 414 aa, chain + ## HITS:1 COG:lin1730 KEGG:ns NR:ns ## COG: lin1730 COG2369 # Protein_GI_number: 16800798 # Func_class: S Function unknown # Function: Uncharacterized protein, homolog of phage Mu protein gp30 # Organism: Listeria innocua # 5 262 7 264 469 205 40.0 2e-52 MKNNPKTRYPLRLEESYAKNIQKAVKEIEKVSLYEFDKYLAPMIDENKLVNDSKFIQDGL FDAASKLIKNAQTYFLGILQNRTAQKIVRKYINSVNAFNKSNVNSQLSARGINQLQTEKW LDSYVQAKIAENISYVTNIRDDYSKKFEQVIYRGITEGKSSNEIREELVRQAGMSSDKAA FIARDQTGTILGQMNSERQKRAGFQAFRWSDSGDERVRDSHRERNGKIYFYADNPLLPGE EYNCRCVAEPVDDEELLEESIDLGLSNQEEHAVKTYVSSEAYKLNDKLRNGYQLDESDLK LIDNLDKALDKMTNYDGEVTRSMFFDSSDDLVKFANNYNLNDVVQFPEYISTTKDIYSEQ DSLRFVIMSSTGKDLGSYNKSEKEVLFNRDAKFIVKDRYLLDGKPYIVLEEYHE >gi|307679287|gb|GL456440.1| GENE 392 376734 - 376898 234 54 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNKDEKNKRRWEDVPKSKSLGYPDEMTKKEIDTSKKKDKDFMQQLKKSLKEKEE >gi|307679287|gb|GL456440.1| GENE 393 376955 - 377242 332 95 aa, chain + ## HITS:1 COG:no KEGG:EF1459 NR:ns ## KEGG: EF1459 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 95 1 95 95 168 98.0 6e-41 MDSQKFIDLCKKHVVDFANSQLDYTDQKKISESDIYVVWLAKTLQNNKALLSTNLFDGMY YEVTFDGDKNELYFDAYKKWRNIRFDVTEGGDQNG >gi|307679287|gb|GL456440.1| GENE 394 377235 - 377444 396 69 aa, chain + ## HITS:1 COG:no KEGG:EF1460 NR:ns ## KEGG: EF1460 # Name: not_defined # Def: LysM domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 69 1 69 69 71 98.0 1e-11 MAKEKKASSKEENKKELSKTTQKTTHTVSEGETASEIATRYHMSLRKLLDLNELESSNQV TEGIRLLVE >gi|307679287|gb|GL456440.1| GENE 395 377457 - 378557 1082 366 aa, chain + ## HITS:1 COG:lin1728 KEGG:ns NR:ns ## COG: lin1728 COG3566 # Protein_GI_number: 16800796 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 2 365 3 367 369 337 54.0 3e-92 MVIRYDKAFIKDFKETDEGYLTITACPITRPGVFPYRRTDGGLSMEAKLPDELFSKTTVL SANAKPMTDDHPTEPVTAANYNKYSKGMTHNDAHVLDNKLLVSFTITDAETIKKINDGKR ELSIGFQADVTKETGVYNGMQYDSVQRNMQINHIAIVDEGRAGHEVAIRGDSAAFMIDTK DKQTGGSNMPKLIIDSKEYEVDPVVKANYDAMQAKLDASEQRSSNVEKVEGERDALQSQV DNLTKELQTAKENSLTGDALDKRVQARVELVSAAKKFLGDSVDLVGKTDRQIKEAVITKT NSNFKGDGKSDDYINAYFDSMTAMATEKGFTASAVFNDAKDKDKEAAEEIEKQKNNRLNM NKKEDK >gi|307679287|gb|GL456440.1| GENE 396 378560 - 379030 842 156 aa, chain + ## HITS:1 COG:no KEGG:EF1462 NR:ns ## KEGG: EF1462 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 156 1 156 156 254 98.0 1e-66 MTIPYPEKYMKPELGIGKLANYQGVQADSLVVGVGGLGFGVGVQVTEDVATTYKDGQFYG ISYAKNYVEEIPYGDAEKVGKYKEHEMVPILRKGAIWVKVDEDVLAGENAKALSTGNFGK ATISSDPATTPSDTVIGTFKTSASAGSLAVLQINLP >gi|307679287|gb|GL456440.1| GENE 397 379051 - 379932 974 293 aa, chain + ## HITS:1 COG:lin1726 KEGG:ns NR:ns ## COG: lin1726 COG4834 # Protein_GI_number: 16800794 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 293 1 301 301 305 52.0 8e-83 MGNDVTATLEARDLQAIDKVIYQAPQEELVARTMFNVKTDINPGAETYAYNVMTRSGAAK IIANGADDLPLVDIDMKRYQSPIFTIAAGIRYSRQEIRQAQMMGTSIDATKAEVARRTIA EKENSFIFVGDPKVNHKGVANAEGIQVINSPKKWKEMTSEEIVEQLRTSRAKITIIPGFK GSSLKLMVAPEQYEELNRRYGEYDARSIMKVVQENGWFSSIEQVYDLKGVGTDNSDSFII MDTKPSTCEILLPEDIVRLEVEWSFPNWKVPFVERCGGALIRTPYAIVRVDGI >gi|307679287|gb|GL456440.1| GENE 398 379952 - 380338 590 128 aa, chain + ## HITS:1 COG:no KEGG:EF1464 NR:ns ## KEGG: EF1464 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 128 1 128 128 198 98.0 5e-50 MLVHNKGSYIRHIGNIRLIPGVNDLDNSDAEAFIKGMELPLNKSLERLGEIEILDHITKG KSKKAVGFTELSANKAVESIADTFDLELLEKWLEEEQANKNRTTVVKAIENQIDDIKNPD EDSVVNPE >gi|307679287|gb|GL456440.1| GENE 399 380350 - 380691 292 113 aa, chain + ## HITS:1 COG:no KEGG:EF1465 NR:ns ## KEGG: EF1465 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 113 1 113 113 218 99.0 9e-56 MPKSTVENVRLTAAELVGVNNDSIKLFIDDAWLEVDALPFKEEVKEKACRYLACHLAVLN NQNTKSEQVGSLKKEYSGFHSTFTDLKRTVYGQEYLRLYNQYAKKGSLSLVVI >gi|307679287|gb|GL456440.1| GENE 400 380796 - 381293 290 165 aa, chain + ## HITS:1 COG:no KEGG:EF1466 NR:ns ## KEGG: EF1466 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 165 37 201 201 311 98.0 4e-84 MAMLAQVHEFGVTIRPKGRFLVIPLMKKYRGKSPRQFDLFFMQTKENHKFLVRNKGKDQL EFAYMLAEQITIPERSFIRSTFDEQAKTWSDYALNLVKKLIAGKMTAEELTNKVGARMQR DIQRTIRNLSDPPNSPITVNNKKSSNPLIDTGKLRQSVTYKVVKG >gi|307679287|gb|GL456440.1| GENE 401 381293 - 381652 266 119 aa, chain + ## HITS:1 COG:no KEGG:EF1467 NR:ns ## KEGG: EF1467 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 119 1 119 119 235 100.0 5e-61 MQRMNFSSLIETFAVDFQLVLPSVEGAGKYIHGEWFPTNEEPKTVSGAIIPYDNRTIYQS GGTLTSSDRQLAYVGSIPLGSKIIDMGKEYKVESEEPYAEHYADVNLYRLKAVTNNAAN >gi|307679287|gb|GL456440.1| GENE 402 381639 - 382115 349 158 aa, chain + ## HITS:1 COG:no KEGG:EF1468 NR:ns ## KEGG: EF1468 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 158 1 158 158 275 94.0 3e-73 MPQINGAFSYELLADELIAIVKKSTGLQLIESSTAGPQPDKPFFSYEVISPYIPVTIDVT DNEVFELVVSIKCHTDSSIQALNLSEQLRKYLNSFSVKVGLQNSRITLVKTTQSKKRDNF ISIDYERLAGFDARFRVQDSYVDNAVIIENIELQEENK >gi|307679287|gb|GL456440.1| GENE 403 382112 - 383149 1164 345 aa, chain + ## HITS:1 COG:no KEGG:EF1469 NR:ns ## KEGG: EF1469 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 345 1 345 345 634 98.0 1e-180 MIEKITDVNVKIDIMHPQPIVGLGNPAIFVQGSTQNYKEYTSLETLAKDFATTTTVYKKA ETIWKQENKPQTIAVVTFVADKPSEPEQPDSLIAGSGIIAAASSYFYNDWHFALLANFVE ADALALSNLIEENEFKFLVIQTATVDELTVFTGNNLTIGLVHPLEEFLDAALIGNTASLT VGSVTWKFRHNLVGITPNTLTTSQLQAIEKANAIAYVSKAGIPQTSEGKTMSGEFIDALH GDHWVKSNIETNVQRLLSTTDKLTFDSNGIALLDTTVANVLETAFNNGIVDIVDETGVGN YSVTALGRQDLNPDDIAARNYKGLSFKYKRSGAIHTVDVTGTIEV >gi|307679287|gb|GL456440.1| GENE 404 383165 - 383563 495 132 aa, chain + ## HITS:1 COG:no KEGG:EF1470 NR:ns ## KEGG: EF1470 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 132 1 132 132 234 100.0 6e-61 MQSMTTYDAKEVSTIIDNVVQFGFQDGDMVSFSKDNSYIEVQTDAQGQSSAAKNNDNLGT FTINLSQNSPCNKQLMALANGRKEFAISVTHSTEKAWASKAYIEKTPDGSFGKGVPTRSY TIKALDYKHEYN >gi|307679287|gb|GL456440.1| GENE 405 383616 - 383948 471 110 aa, chain + ## HITS:1 COG:no KEGG:EF1471 NR:ns ## KEGG: EF1471 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 110 1 110 110 202 94.0 3e-51 MTKKDEVKELEAKNNIPEAEKKPFSKFGKQEKHIVEDVEYTFQFPGTRAAQAILDNSKGP SNTFSDVAYHSQLMESVIVGPKLDWDYWDEHEGYREVMALADNFLGRMLN >gi|307679287|gb|GL456440.1| GENE 406 383989 - 384129 133 46 aa, chain + ## HITS:1 COG:no KEGG:EF1472 NR:ns ## KEGG: EF1472 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 46 21 66 66 85 97.0 7e-16 MFRWLPVIAGIATKDEVEIATAEELAVWNEVAYQKINLTKSRGGVI >gi|307679287|gb|GL456440.1| GENE 407 384132 - 389297 4885 1721 aa, chain + ## HITS:1 COG:lin1716_2 KEGG:ns NR:ns ## COG: lin1716_2 COG0739 # Protein_GI_number: 16800784 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Listeria innocua # 1278 1506 10 225 340 147 43.0 2e-34 MADALRSSVIELDWKINNRSLERANEETDKILAKAARMEGTYQNSAKSIDGATTSLKRNS EGLKQNTDKVVQFGNRAKDSMQKTTSSAKQTEKQVKDVGSQFDKSKNSASVFAQSSATSL KVVGKAAKGVQTSIGHIGTVATKASDVAWNAFTKIRNGAMIAGAAIAGAGKKAFDYASDT NEALNKVEVAFGDNNKVVEDWSKSTLTNIGLAQGTALDLAATYGDMSTSMGIGTEEAAKM STSLVDLAGDLASFKNIGIDRVNTALNGVFTGETEALKGLGIVMTQTNLEQFAMASGALQ SSIDNSKAAKNAMAREKAQDRLNKAIKKHGENSIEARDAQLKLTEAESKGEEVQQAKLDS LSQEELVRLRYNYVMSKTKNSQGDFARTSDQAANATRVFTESIKETSAKLGQGLLPIFTP LIIKATDFVKKGEEIPDMLENVGAKIEPTAKQVIRYFGQAKDYFIDEVIPTAKKVGKAIG PGIAEGAKDMFNLMDKGFKYIIKPGIRVLKEFTDENPVAMKQVGKWAAYGIGGLLGFKLI GKPLLGVSKGILGIIGKLEKLGNTAQREAFKTRKALEDVDSAAQKASAPTHTTASPSIQE SLPVGSVGKIGKGTKLFGGVRRFAKSVPLLSYISAGLTLTQINKNNKFEKIGDSLGSIVG GALGAKAATLAGAKLGAAAGTTFGPLGTLIGGVLGTAAGSIFGSKFGKKLQEKWPDISKK ISELWESSKDNFLLGPLVQGIDKAVKKSKSGIKEIKASAKDLFEKPFDNTTKSGNGVSKA TAKRMNSFMKNYELLVNQDTTGKIEGRVLTNEEVTKRYKALEDMQNQVTKQLDKKKDKSN SNLDKLASMGILNEKDAQGAKAAADELAKVRTNMFSEKVQDFKKLEKQEYDESITATEYY TNRINEIKEKARLENRELSENDKKEIESLEKTSAAAVRAVEEKHAAANKSIHEDMKNQAV VALSDSAKEQKIIMGNLKNASGEISAQQAADAVAASYKAKEGTIKSANEKYEETKRILDE ERYVNGTITQQQYDDALKKAQEQRDGVVKEAEKQHEDVVTQAKKQAEGHLEQVDWETGQT LSKWEVFKKDSKKKFKEIWDGTVEGAKSFGKAFGEAMDKVVSGALETWDNFKTGLADKVN AVTGGINVVLDFFSIPKIPEWKPNTPNSTKNKHGRSFSTGSRGASYSGQALVGEEGVELA YNKSTSSMRLLGSNGPEVTNVTSGERILNHSDTKAVLNGGMGQGTVLPGFHKGKGNGLSD FVDSAKDFGANTVDKLKDFGSNAVDKAKEVGTKAIEKTKDIAETAKDWLSDPIGKVTGLF NKHNTYKKGKNIQGLGHGVMNKLKDTSAEWVKNKLEAFKGFFDSEDGVSFGSGAFAPHFG SPFVRTSDYGKRPGLYGDFHTGIDYAAPTGTPIPAQYPGLVDWVQSSSIGLGEHVGIKVA DNLWAMYGHMSRIRAKMGDKVKAGQIVGDVGSSGWSTGPHVHYELRKGGPNGQHVNPDTY GGAAGGVAVGAAGWGPQVRKAAKQMNQQVSDAEVNGILAQIQRESSGNQSIIQSSAVWDV NTASGNPARGLLQYIPQTFDAYKVRGYENIMNGFHQLMAFFNNSNWRTDLPYGHSGWGPT GHRLRAYAKGGRPSKGETVLVGENGPELFEADTAGTVHPHEKTKALFNQGSPSVNFSPNI TINVGNNSDKSVVGDIKEAVRQALEDEYAKLLNILGTGEVV >gi|307679287|gb|GL456440.1| GENE 408 389297 - 389854 625 185 aa, chain + ## HITS:1 COG:no KEGG:EF1474 NR:ns ## KEGG: EF1474 # Name: not_defined # Def: LysM domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 185 1 185 185 333 100.0 2e-90 MGYIQSGKSKVEIVNVSETVTSAANVSQYPVESGAPITDNMMYTGGPVTISGWILAKNGN AAEQAYNTLVAWQKDVRWIVYRGRSYFKNAVIQDISKGYDTVENGFTITITLQPIRVAKT IWEKIPQPPVAKQPSKPSNAVYVTVQPGNTYWGWWQQYGTSIQQLRDWNKWPDRFIPIGA RARVK >gi|307679287|gb|GL456440.1| GENE 409 389864 - 390226 279 120 aa, chain + ## HITS:1 COG:no KEGG:EF1475 NR:ns ## KEGG: EF1475 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 120 1 120 120 221 100.0 6e-57 MSLRAYIPIDKYSLPEKFEIPLGNTNYIFEVDYNQTEKFFTVDLYDIDHTPIAIGERMVI DERLWQDIVDTRLPSADLVPMDESGASKEITFENFGIQVFLYIDDLPPNYNVPSLEREDN >gi|307679287|gb|GL456440.1| GENE 410 390227 - 391057 605 276 aa, chain + ## HITS:1 COG:no KEGG:EF1476 NR:ns ## KEGG: EF1476 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 276 1 276 276 546 100.0 1e-154 MGNTQWQRLLQIEIHDKNGKNRVLLRADSGRLDRLEIHFTAPFSDSPNPSEVSVTIYNLN KKSIDFIKKGNPVYIHAGYAGTSNGVITSGTIAEVKPSVLNGVDRATTFTFLEGKDYSEQ KEVNITFNNGTDAHTIINRVAREANIPLSEIKLKNNKIYGSGYTADGQAMMVLEEISKAC DTSLYFKRGQLVIKNFRDGNKERYRLSPETGLINQPTKVESHDYTGWSVECLLQHKITTG TAVYIDSKNVKGNFYVKNGQHSYDGSRFVTTCEVVT >gi|307679287|gb|GL456440.1| GENE 411 391057 - 391389 213 110 aa, chain + ## HITS:1 COG:no KEGG:EF1477 NR:ns ## KEGG: EF1477 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 110 1 110 110 202 100.0 5e-51 MKETDLAFFRSFKNRILKEINVMQLCRVVTVKGARADVQPMALKSDGGKRALILNALITK HCQSDISQGAVVVVVFCDRDIDNYRSSADYSLSSDRMHSQNDAVIMGVIA >gi|307679287|gb|GL456440.1| GENE 412 391389 - 391736 320 115 aa, chain + ## HITS:1 COG:no KEGG:EF1478 NR:ns ## KEGG: EF1478 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 115 1 115 115 185 100.0 4e-46 MRDLKIVNGDLSFIDYGILLVEGDLELAQSVFMILSIRLEEFKLDTSVGLESDNMFGKNY NEDYLKQDITEAILDQEPRINSIENIEIVRNNRQLNITVEMLSTLGDEVEVVIRA >gi|307679287|gb|GL456440.1| GENE 413 391729 - 392883 1131 384 aa, chain + ## HITS:1 COG:lin1710 KEGG:ns NR:ns ## COG: lin1710 COG3299 # Protein_GI_number: 16800778 # Func_class: S Function unknown # Function: Uncharacterized homolog of phage Mu protein gp47 # Organism: Listeria innocua # 1 379 1 379 383 393 54.0 1e-109 MLDENGFKRKTYDEILYDMSEKAKALFGSDVNVSGHSVLGIIIRIVAWFLSISHELTERV YYSGFISQATGVSLDRLGANSGIYRNPATVAMVELEFSGKPGYIINEGVRFSTENKVMFQ MIDIVKIDDNGFGKGRAISLEENASSNVPANTIIVQVEPTEEISSVNNPARAEGGAERET DKAYRDRIGISVRGNPGPPINGILTALLEVSGVRTASVVENKTMETDSYGNPPKSVHVHI LGGVKDDIGQAIFKSVAAGIDTVGNQEVEVKDLGGFSHIVKFDYAKSVPIFVNISIQVDS KFEKNGQEEIKVIVNNYINNLTMGEVVRFSYIYPLIYQIPGVVVADVKIGLSTETTEVKD INLNPNESAECKTENVVITSDQKA >gi|307679287|gb|GL456440.1| GENE 414 392867 - 393496 443 209 aa, chain + ## HITS:1 COG:no KEGG:EF1480 NR:ns ## KEGG: EF1480 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 209 1 209 209 399 99.0 1e-110 MTKKLRDYLPDLFNRENSNISKLLEIIEFEIKDLTDLLNKVANWRSIDEARGKGLDELGA NVGQARGKTTDEIYRVLIRGKVARNTSDGSIDKMLHAIATSLNWHPSDIHIISANETVDE KEPACVIIKKAPLDYLNSSGLSISQFLQIVESISAGGIRVAYVNLEGTFSFSSTTDIEIS KEGFADIDGNIGGTLGGVFIPENDYKLPL >gi|307679287|gb|GL456440.1| GENE 415 393515 - 395158 1157 547 aa, chain + ## HITS:1 COG:no KEGG:EF1481 NR:ns ## KEGG: EF1481 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 547 1 547 547 1024 96.0 0 MKFTKELPVWLAPGIKPPESLTSDGWKASQKPPADYFNWFFSRTHGALKELQDSATHIED FNAHKSNISNPHAVTATQVGLGNVLNQKQATKSEFDAHDQDNIRHITDVERNSWNGKAEK NHTQPWSTITGIPDSTITKKGIVKLTDSVTSTDILTAATPNSVKQVNDNANAAMASASSV NDNLTSHKIDYKNPHKVTSAQVGSYSKTETDNLFINKSDAENGLLVRKSIEITDLNNAKE PGIYSIPATGVENKPLPNSGSLFVSKDPGGVRQLFQTERTIVIRQFGGVPSNWTDWKEVA FTTNVVNLTEPQRIGGTKEFADIPLVDGRELALKEDIFFYQKTGIDEVQAAYKDSFREET NMFLTREGNRVDAYLRVNVMDVTKLKTAFVPIFQIPDGFKIDLSMRESFWNVPLTVTQYT YPQGNYGALYEMDAKGIRFGSDRLGNHYLHGSWHTNDPKPDAKFKYMLYVTLYKLAEGRD FVSGSYKGEIYYVAVEIDGQLGEKLKVSDGFYKYTVGTKINKVSQNAWVIGYDQSGTEVT RSKIKIL >gi|307679287|gb|GL456440.1| GENE 416 395180 - 395614 433 144 aa, chain + ## HITS:1 COG:no KEGG:EF1482 NR:ns ## KEGG: EF1482 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 144 1 144 144 245 98.0 4e-64 MKKVWKYGRTGGQELQVSDDFPMQVPFTDVAPLPTVNLEDQFFIPSENRWKEISNQLDKE NLDNLSILYKNLEKDNELLKAKADNLALLNSKLMLNDLNIQKENTLLKAKANDLAEIGAK SMLSIVQITGEIGKINEQLKGGAK >gi|307679287|gb|GL456440.1| GENE 417 395614 - 395742 275 42 aa, chain + ## HITS:1 COG:no KEGG:EF1483 NR:ns ## KEGG: EF1483 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 42 1 42 42 73 100.0 2e-12 MFTFDDVKLMYDWGLYTDDEVKLFVPTCITEEEFNEIVGKEG >gi|307679287|gb|GL456440.1| GENE 418 395747 - 396103 369 118 aa, chain + ## HITS:1 COG:no KEGG:EF1484 NR:ns ## KEGG: EF1484 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 118 1 118 118 187 100.0 2e-46 MELEQKVKEHEKRLGDHDREIGRLDRRTMTLQEQLNANLVRLDESNKFLREQNMKQMEQN SEILNAILNRNSEADERKDELKKLNTENIWKVILAIFVSSGAITILFNWLSTFLGGAK >gi|307679287|gb|GL456440.1| GENE 419 396172 - 396297 194 41 aa, chain + ## HITS:1 COG:no KEGG:EF1485 NR:ns ## KEGG: EF1485 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 41 25 65 65 68 95.0 9e-11 MLAVFNVDDLTSEKVVTLVAAIGLLAAYIVGEGFVDSNRGN >gi|307679287|gb|GL456440.1| GENE 420 396356 - 397462 1296 368 aa, chain + ## HITS:1 COG:SP1937 KEGG:ns NR:ns ## COG: SP1937 COG5263 # Protein_GI_number: 15901761 # Func_class: R General function prediction only # Function: FOG: Glucan-binding domain (YG repeat) # Organism: Streptococcus pneumoniae TIGR4 # 51 197 26 172 318 87 35.0 3e-17 MKKFSKFLLSLVVVTGLLLPTAADAYQVEQDPIDFGGYFPGYATNELIVLHESGNGNNVG PNSLDNETAYMKRNWTSAYVSYFVGSGGRVKQLAPAGQIQWGAGATANAKAYAQIELART NNKETFKKDYAAYVNLIRDLATQIGATFDLDDGTGYGIVTHDWITKNWWGDHTDPYGYLA QWGINKAQLAQDLQTGLPEDGSETIVNPGKPNAPKYKVGQHVRFTTIYKNPDAPISQHIN ADSLWTQVGTITQKLDGRKNLYRIENSGKLLGYANDGDIAELWESSKPTPAKTFTIGVNE GIVLRNGAPSLSAPVYGVWPKGSTFKYDSVRVADGYVFLGGSDSNGTRIYIPVGPNDGNP SNTWGTGY >gi|307679287|gb|GL456440.1| GENE 421 397788 - 398765 155 325 aa, chain + ## HITS:1 COG:no KEGG:RBAM_011990 NR:ns ## KEGG: RBAM_011990 # Name: not_defined # Def: hypothetical protein # Organism: B.amyloliquefaciens # Pathway: not_defined # 19 312 17 319 328 189 37.0 1e-46 MVDKFFAETYLNEPSPKVGQSKPIKITAENGKRYFLKTEIVNSTKQNAVFFQELLCSLLA KHLKVPVPNFAIIELEKDFIEANAELMFSRKFKPGLYFATEEVNDVEDNLAESISLGVNN GLPKVKRTWTGYLNNVSNPEAYADIIAFDIFVQNCDRFSNLGNLLIGSESGLRKVYAIDH GHAFGTPNFDTAKMKLLKVNENPNYDEWLLNQFRRHGGGFTFGPVFQGMQNNIDLTGNNP FCRIIDSIEKISKDELTFILGEIPEEWTISGDQQRKVYLDFLSRQRLIVKDIINKIVRAN LFSNHTGGDLLWNESYSNEESSGIQ >gi|307679287|gb|GL456440.1| GENE 422 398819 - 399610 461 263 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227553289|ref|ZP_03983338.1| ## NR: gi|227553289|ref|ZP_03983338.1| conserved hypothetical protein [Enterococcus faecalis HH22] hypothetical protein HMPREF9509_01787 [Enterococcus faecalis TX0411] conserved hypothetical protein [Enterococcus faecalis HH22] hypothetical protein HMPREF9509_01787 [Enterococcus faecalis TX0411] # 1 263 1 263 263 437 100.0 1e-121 MNIPSSGEVKYQILTPKNSKFKAILNSKVDEKTYKLGHDVFNHILKSVDNNNLSFGLNPS SETFINQFVSQNLPKGFVFSDVRFAKSSNVDLLFNNLLEEYVGSKFLNEELGSNSMVVKK KAIQLINKKNNLDKLIKKNIKIKPVKELPKSYSIDFGYKFDHGLEFIQSAPDKITSSYDW LERMSFITDNYYKADKFTLVYNSLSESNIDGTLDQMINYLTSKDERVIAYDIFSTQGEQS FNEDLIHIEKYAQPVEELEKVLA >gi|307679287|gb|GL456440.1| GENE 423 399611 - 399748 98 45 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307291477|ref|ZP_07571361.1| ## NR: gi|307291477|ref|ZP_07571361.1| hypothetical protein HMPREF9509_01788 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9509_01788 [Enterococcus faecalis TX0411] # 1 45 1 45 45 66 100.0 5e-10 MNAFDLFLKLKEISEKELMKKVLYISDVNMIIQYVEIEDDCLDGQ >gi|307679287|gb|GL456440.1| GENE 424 399787 - 400035 222 82 aa, chain - ## HITS:1 COG:no KEGG:EF2084 NR:ns ## KEGG: EF2084 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 81 1 81 82 124 90.0 2e-27 MKTNYVGVVEKIRMLSMHPKMLVRFSLVTPDETINCIVSKHELANTLLMLPEKSELAVYG HLNKRNQLVIDKMLVRNFLISV >gi|307679287|gb|GL456440.1| GENE 425 400332 - 400511 225 59 aa, chain - ## HITS:1 COG:no KEGG:EF1490 NR:ns ## KEGG: EF1490 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 59 1 59 59 85 100.0 5e-16 MRNTWLAEQLQSISEEPNSFIIEETIKYIEQLEDDNESLQVALEGTIWSPKKWNEPLEK >gi|307679287|gb|GL456440.1| GENE 426 400570 - 401013 570 147 aa, chain - ## HITS:1 COG:SPy1984 KEGG:ns NR:ns ## COG: SPy1984 COG1780 # Protein_GI_number: 15675774 # Func_class: F Nucleotide transport and metabolism # Function: Protein involved in ribonucleotide reduction # Organism: Streptococcus pyogenes M1 GAS # 1 145 4 144 160 138 47.0 3e-33 MNIRYISISGNTRSFVQRLTTYSEEQHQHNEKNPTITFKEISENSPLEVETEPFFTFVPT YLDGGDGINNGNTEILTEVMREYLAFENNYRYCSGVVGSGNKNFNHQYCLTAKQYAEQFN FPFLADYELRGTQADIERIYAILKENQ >gi|307679287|gb|GL456440.1| GENE 427 401386 - 401709 549 107 aa, chain + ## HITS:1 COG:no KEGG:EF1492 NR:ns ## KEGG: EF1492 # Name: not_defined # Def: V-type ATPase, subunit F # Organism: E.faecalis # Pathway: not_defined # 1 107 1 107 107 112 100.0 4e-24 MVQEVLEQIKAAEDAVEEHRQQAKMNCRLYEEQKQERLAELRQESEEAVEKVLTDSLATQ EKMLQLEKEQLLDETKRTEQALHERYEANKEQVIDSIIERVKDVYGS >gi|307679287|gb|GL456440.1| GENE 428 401699 - 403678 2084 659 aa, chain + ## HITS:1 COG:SP1322 KEGG:ns NR:ns ## COG: SP1322 COG1269 # Protein_GI_number: 15901176 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit I # Organism: Streptococcus pneumoniae TIGR4 # 1 659 1 662 663 357 35.0 5e-98 MAVSKMEKMTIIAAAEKEAAILQAIQGLQIVEVKRIFHSPEEEQALKSQYSFLQAEQSTE QLRKYETMLQQLQELLLFLTRSSGKGLKIKRKVYTLEELEQTFDEETLQSYLTELKNIQE SLKQIQTDRQGLEAEEELLGRWQYLDILPHKQQLKSSYVVHGSINLANKASFLSALSQWP TVYFEEIYQSMHHSYFTLVYLKEHQQSVTELLNQYSFEPLQYRYDVPPKEAYQQVKERYE ILQKEEKALKQQLASYHDFYETFCLAEEVLLAVIQREQARQHLLNASSFFILQTWIPVEE KADILTAIEEKVPKDEIALTFENPTKAEIETDIPVKLANNKLVQPFEMLTEMYSLPKYEE VDPTPAMMPFYLVFFGMMVADIGYGLLMLLLSIIALKAFVLPRGMKRFADFFLILSFPTI IWGFIYGSFFGAALPPTMFGIKSPFPILSTTEDVNTILILSVIFGFIQLVVGLMINGIQL SKQKRYLDSINESYAWLGILFGLALLVVGKLVVKNEGLFTAGAILASLSAIAIIVIPMIQ SKAKLKGLAKGLYGLYGVTGYVGDLVSYTRLMALGIAGGSIASAFNMLVEFMPPVARFSV GILLLIVLHALNIFLSLLGAYVHGARLQYVEFFGKFYTGGGRAFNPLKTKEKYVNVEKK >gi|307679287|gb|GL456440.1| GENE 429 403706 - 404179 804 157 aa, chain + ## HITS:1 COG:SP1321 KEGG:ns NR:ns ## COG: SP1321 COG0636 # Protein_GI_number: 15901175 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K # Organism: Streptococcus pneumoniae TIGR4 # 10 156 12 158 158 142 60.0 3e-34 MMDYLINNNGGIVFAVLGMAMATIFAGIGSAKGVGFTGEAAAALTTEQPEKFGQALILQL LPGTQGLYGFVIAFLIYINLGNDMSMVQGLNYFVAALPIAFAGLFSGIAQGRVAAAGIQI LAKKPEHATKGIIYAAMVETYAILGFVISFLLVLNVK >gi|307679287|gb|GL456440.1| GENE 430 404196 - 404777 850 193 aa, chain + ## HITS:1 COG:no KEGG:EF1495 NR:ns ## KEGG: EF1495 # Name: not_defined # Def: V-type ATPase, subunit E # Organism: E.faecalis # Pathway: Oxidative phosphorylation [PATH:efa00190]; Methane metabolism [PATH:efa00680]; Metabolic pathways [PATH:efa01100] # 1 193 1 193 193 255 99.0 8e-67 MDAIEKIISEIKQQGKQEVDAYVTSEQTRIDQEFQAAQQEILLKQEHEIEKRQQQLLKEF KQRQQRQTLEIRQDALNKKQAYLNQLFDEVVLKMSEWSAEEFQQFMKAQLGSLELTGKAT ILLGEYSQTKVTQEWLTALSDATVQWELSEEVVPKESGFIVAKDGLDYNFLFSALVEEIQ KTEGFKVAEKLFS >gi|307679287|gb|GL456440.1| GENE 431 404794 - 405795 994 333 aa, chain + ## HITS:1 COG:SPy0151 KEGG:ns NR:ns ## COG: SPy0151 COG1527 # Protein_GI_number: 15674361 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit C # Organism: Streptococcus pyogenes M1 GAS # 4 330 2 331 332 123 29.0 5e-28 MRKPTYHQINPLIRLKETELLSEQQFQQLLEAETVEDVKNMLKSTVYQPYLTETFEEEFD YHSSEALGSLYRWLYEMAPEPAVVTLYTMRFTFHNLKILTKAERTGKDFDYLYLEDGRYS LNTVKSAIHTKNSSELEPALLEVIRDVFAYLEEGGLPQAIDILYDRAFLQQQRKLADELG YEELTKEVIAFIDLTNLSTMARGIVQHQNSNFLSTVLSSAGSLSKKELLTYAEKSLVEFT AFVRTTNYGQLLEKIINKETNELNLLAFEKLKDDYLTSMYENGRTVAFGPLPLLAFLNAK EVEWKNLRLILVGKHSGFSNEKIRERMRKVNGV >gi|307679287|gb|GL456440.1| GENE 432 405785 - 406096 443 103 aa, chain + ## HITS:1 COG:FN1737 KEGG:ns NR:ns ## COG: FN1737 COG1436 # Protein_GI_number: 19705058 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit F # Organism: Fusobacterium nucleatum # 3 103 5 105 105 99 48.0 1e-21 MGYKIGVIGDKNSILPFKLFGFEVHHAISEMQVREAIETMAKNKFGVIFITEEASTLAEE TIERYKEQVTPAIILIPSHNGTIGIGLSEIEKNVEKAIGQNIL >gi|307679287|gb|GL456440.1| GENE 433 406114 - 407895 2329 593 aa, chain + ## HITS:1 COG:SPy0154 KEGG:ns NR:ns ## COG: SPy0154 COG1155 # Protein_GI_number: 15674362 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit A # Organism: Streptococcus pyogenes M1 GAS # 1 590 1 591 591 853 71.0 0 MQIGKIVKVSGPLILAENMSDASIQDICHVGDLGVIGEIIEMRGDVASIQVYEETTGIGP GEPVISTGEPLSVELAPGLIAEMFDGIQRPLDTFQEVTHSNFLGRGVKIDALDREKKWTF EPTVAVGEEVSAGDIVGVVQETPIIQHKIMVPFGVSGTIAEIKAGDFAIDETVYSVETAK GTESFSMMQKWPVRRGRPILEKLSPKVPMVTGQRVIDTFFPITKGGAAAVPGPFGAGKTV VQHQIAKWADVDLVVYVGCGERGNEMTDVLNEFPELIDPTTGESLMNRTILIANTSNMPV AAREASIYTGITIAEYFRDMGYSVAIMADSTSRWAEALREMSGRLEEMPGDEGYPAYLGS RLAEYYERAGQVIALGKDHREGSITAISAVSPSGGDISEPVTQNTLRVVKVFWGLDSQLA QKRHFPSINWLQSYSLYSTEVGQYLDLELQGNWAAMVAEGMRILQEESQLEEIVRLVGID SLSDKDRLTLETAKSLREDYLQQNAFDDVDTFTSRTKQAKMLQLILTFGEEGQKALSLGT YFSELMAGTVEIRDRIARSKYLPEEELEKLDRLQAEIKTTIKEIIAEGGMTND >gi|307679287|gb|GL456440.1| GENE 434 407888 - 409264 1896 458 aa, chain + ## HITS:1 COG:SPy0155 KEGG:ns NR:ns ## COG: SPy0155 COG1156 # Protein_GI_number: 15674363 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit B # Organism: Streptococcus pyogenes M1 GAS # 1 454 3 456 471 763 81.0 0 MIKEYRTINEVVGPLMIVEKVAGVKYEELIEVRMQNGEIRQGQVLEINGDKAMVQIFEGT SNINIRDSKVRFLGHPLELGVSPDMMGRVFDGLGRLKDNGPELLPEKKLDINGEVINPVA RDYPDEFIQTGISAIDHLNTLVRGQKLPVFSASGLPHKELAAQIARQANVLNSEEEFAVV FAAIGITFEEAEYFMEDFRQTGAIDRSVLFMNLANDPAIERIATPRMALTAAEYLAYEKG MHVLVIMTDMTNYCEALREISAARREVPGRRGYPGYLYTNLATLYERAGRIRGSKGSVTQ IPILTMPEEDKTHPIPDLTGYITEGQIILSRELYKSGIQPPIDVLPSLSRLKDKGTGEGK TRGDHAATMNQLFSAYAQGKQAKELAVILGESALSDVDKIYAAFAQRFEEEYVNQGFDTN RSIEETLDLGWELLSMLPRTELKRIKEDMLDQYLTEGK >gi|307679287|gb|GL456440.1| GENE 435 409269 - 409904 798 211 aa, chain + ## HITS:1 COG:FN1733 KEGG:ns NR:ns ## COG: FN1733 COG1394 # Protein_GI_number: 19705054 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit D # Organism: Fusobacterium nucleatum # 1 207 1 206 211 196 56.0 3e-50 MARLNVNPTRMELSRLKKQLTTATRGHKLLKDKQDELMRRFIALVKENNELRIQVEQEVT DALSNFVLANATLNEAFIEELVAIPAEKVELEIIEQNILSVPVPKMIFDYDESVQEAPLD YGYVNSNSELDQAFAKISSILPKLLALANVEKTCQLLSKEIEKTRRRVNALEYMTIPQLE ETIYYIQMKLEENERGEITRLIKIKSMNKEN >gi|307679287|gb|GL456440.1| GENE 436 409979 - 410389 592 136 aa, chain + ## HITS:1 COG:no KEGG:EF1501 NR:ns ## KEGG: EF1501 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 106 1 106 106 196 100.0 2e-49 MKNEERRKAIALNCQKYESDYARLVEPINELLLNLGAAISEEAAKQIILNVKRYHHGVKY LPECHLDESNQFIEDGLEALKKGDLGNGALQLFGAGLNFASFAAKAQGTKKIDAHQMLAE RFTKLLSVQMDNDNKQ >gi|307679287|gb|GL456440.1| GENE 437 410440 - 411387 1069 315 aa, chain - ## HITS:1 COG:SP0010 KEGG:ns NR:ns ## COG: SP0010 COG2367 # Protein_GI_number: 15899959 # Func_class: V Defense mechanisms # Function: Beta-lactamase class A # Organism: Streptococcus pneumoniae TIGR4 # 35 287 159 406 422 63 27.0 4e-10 MKKQQLSLYGTIFFLCFFLIVGFFFSSRGEDYAKESEQKVTIDSAKHEKHTKDKEENNSA NTVFFDKINDLLVASVKEFEGTVGISYLDLETGEQRSVNGQHEFYTASTIKVPLTMLVAD TVASGQKKWTDLIPYNAEEDYEEGTGIIAYNIQPEYPLKTLQEYAITYSDNIAKNMLYDT LGGDAKAKREMYQRYLHKSPSIEEPQFSSEDALVILQKLYTEKATKPDYQAIYDSMKQSV FHERMETPTTQGKVAHKIGSYDEFIHDMGILETPHPFALAIFTKGPDNAKSAAFIASVTD KLWQLQVSEYPNDNS >gi|307679287|gb|GL456440.1| GENE 438 411482 - 413362 1502 626 aa, chain - ## HITS:1 COG:BS_fbp KEGG:ns NR:ns ## COG: BS_fbp COG3855 # Protein_GI_number: 16081071 # Func_class: G Carbohydrate transport and metabolism # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 7 619 47 662 671 662 53.0 0 MATLNRDQQIEEIINLEAILNLPKGTEHFVSDLHGEFEAFDHILRNGSGRIREKVQFLFK QELNAHQMDELCFIIYYPEEKLTLLENESALSYEWWLLTIRRLVEIVRSSSMKYTRSKVR KALPETYGYILEELIYQYDETTTKNGYYQQIIEKIILLGEAKRFVTELAYLIQRLIIDHL HVIGDIYDRGPAPDKIMDRLMSYHSLDIQLGNHDMIWLAAYSGSLACLANVVRICARYGN LDLLEERYTIDLTALKKFSLETYKENPAFAPKKNPYRALTEAEKQVAMRVQQAIAIIQEK LEGQIIGRRPDFNLAHRLRLDKIQGETITFDECRYTLINSCFQTVSEEQPYQLTREEKQI IDDLLTQFQSSPRLTKHMRFLMEKASLYLVYNQNLLIHGCLPLNADGTFQAYTFKGHSYS GKALVDFFQEMLEEAYAQPASTDDYATDCLWYLWCGEGSSLFGKRAMKTFERYFLAEKET HYEEKNPYYSLRDTVEVCERILDEFEVTGENRHIINGHTPVKRTKGESPIKANGTLLVID GGFSKSYQTITGIAGYTLLYNSFGLQLTAHKSFSSKETAILNNQDIHSIKQVIDRPLQRL LVKDTTIGKELLKQSQALQKQMKQNQ >gi|307679287|gb|GL456440.1| GENE 439 413445 - 413543 71 32 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPIIVGYLAKKSNRRKSEKNVENYRKLLGFML >gi|307679287|gb|GL456440.1| GENE 440 413578 - 414870 1316 430 aa, chain + ## HITS:1 COG:BS_lysA KEGG:ns NR:ns ## COG: BS_lysA COG0019 # Protein_GI_number: 16079395 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate decarboxylase # Organism: Bacillus subtilis # 2 429 3 430 439 531 58.0 1e-150 MLFGTAKMNRENHLEIGGCDTVKLAQKFGTPLFVYDVAHIRAQARGFKQTLNQLGIKNKV VYASKAFSCLAIYQVLKEEDIACDVVSGGELFTALKGGMEPAEIEFHGNNKTPEELRYAL DNKIGTIVIDNFYEIDLLEELLATRNQTQKVLFRVSPGVDAETHDYILTGQEDSKFGFDV ASGQATEALVRLLSNPSFDVQGVHCHIGSQIFAVEGFLAAVEKMFTILEDWRQVHQFTAR VLNMGGGFGVQYTQQDEPLAPATFVEKIVYSLKGHCEQLGYPLPELWIEPGRSLIAEAGT TIYTVGAQKEVPGVRHFVSVDGGMGDNIRPALYQAVYDGFLANREGHDSVKKVTVVGKYC ESGDVLLRDILLPEVKAGDLLAISSTGAYGYSMASNYNRNPRPAVVFVEDGQAKLVARRE TYEDMTTLDC >gi|307679287|gb|GL456440.1| GENE 441 415016 - 416008 938 330 aa, chain + ## HITS:1 COG:SPy1892 KEGG:ns NR:ns ## COG: SPy1892 COG1073 # Protein_GI_number: 15675706 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Streptococcus pyogenes M1 GAS # 105 320 91 305 308 202 49.0 6e-52 MKWLLGLLIIFAIIGVVFSFYIANYFLKIALLKDNPWYHKKGHRLLNPDNFQERETRYTK IEEQQKQEGEAFWTESFAEDRWLKIKDETLYARCFIPYPDNHRWAICVHGYRSNGKRDMA YTALRFAEEGYNVLVPDLRAHGKSSGDKIGMGWLDRLDLLSWLSEVLAIDMEAEIILVGG SMGAATVMMASGEKLPTNVRGLIVDCGYTSVYDEFKYVLHESFHLPAFPILTIANQLALN NYGFQLKTASSVRQLHKNTLPTFFIHGTGDRFVPMTMFEENLAATQGIKKGLIVAKAPHL SSSVYEPENYYSSIFEFLEENCPAVKTISD >gi|307679287|gb|GL456440.1| GENE 442 416024 - 416557 306 177 aa, chain - ## HITS:1 COG:no KEGG:EF1506 NR:ns ## KEGG: EF1506 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 177 1 177 177 281 100.0 1e-74 MEMYQVIRYFLNEMEKKIWHALLTLVLFCLYISIFDVPFTIKNTFIGRLLFPKAFMNAGS ANLIFYLISFFGFLWSIFIFAYLLNKTRLKLLNKTFPYLLEILEVCILPLVILFAYIYIY LRVHGEGFSYIRESLLQQELTYSMKWFLCLGSLAPLFFFLSTLNLTKRVRQKKDMES >gi|307679287|gb|GL456440.1| GENE 443 416596 - 416706 78 36 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRKNAIATYFLDTLCVSYSRGWLRAFFSRKLRTAMV >gi|307679287|gb|GL456440.1| GENE 444 416843 - 417697 520 284 aa, chain + ## HITS:1 COG:no KEGG:EF1508 NR:ns ## KEGG: EF1508 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 125 284 1 160 160 310 98.0 4e-83 MAEITVKTISAKDDLKKLLLGQEYDHQQPVKNILKARTSNVHIEKYEVVEDVFLKLTGKA TAHKDIMNSFWTTYKIMLQLVYPDFFRPAEVIGENQESYLEKPSEQNLLAVNSKYPPHDS GASAVISDQYLTYFDQVFPDYLPNPVPKKYTWNEFLLDNFTKFERVHQDPQLKRFAELTH SIGNITVVPLGFNSGRSLSFKDYWDYSLEQLSIFLASFHSWESYVHTYEMQPFLNEQYQP VALWKNHLKKDSFILPQNIEEINEYLVQVNQRIEKRGQRIVNRL >gi|307679287|gb|GL456440.1| GENE 445 417910 - 418449 490 179 aa, chain + ## HITS:1 COG:no KEGG:EF1509 NR:ns ## KEGG: EF1509 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 179 1 179 179 351 98.0 6e-96 MQFTLLNQGNQAYWEATYIEAFPEEERLPFDQLLTSSQAGKFHLFVIQEADENVGILLNS QIAPEATYVFFFAIDQHHRNKRLGSTVLALLKTRYPKGVLLESEEIGKNAANEAQREKRY QFYERNGVLDTGYLIMDRGLTFHIMFAGASGFGGTQLQFLLDFHPVAKIWKKPSIDGIR >gi|307679287|gb|GL456440.1| GENE 446 418547 - 418891 598 114 aa, chain - ## HITS:1 COG:L106356 KEGG:ns NR:ns ## COG: L106356 COG2151 # Protein_GI_number: 15672865 # Func_class: R General function prediction only # Function: Predicted metal-sulfur cluster biosynthetic enzyme # Organism: Lactococcus lactis # 9 114 6 110 110 149 73.0 1e-36 MSEQPQQRSTEEVEAIKEDILTALETVIDPELGIDIVNLGLIYEVEFAEETGDTVIKMTL TTMGCPLADVLTEQIHGVLKDIPEVNNIEVKLVWYPAWTTDKMSRYARIALGIR >gi|307679287|gb|GL456440.1| GENE 447 418955 - 419038 70 27 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRSISHVMEFTDLLKKLIKLEIHFILI >gi|307679287|gb|GL456440.1| GENE 448 419168 - 420232 1055 354 aa, chain + ## HITS:1 COG:FN1586 KEGG:ns NR:ns ## COG: FN1586 COG4948 # Protein_GI_number: 19704907 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Fusobacterium nucleatum # 1 352 13 365 375 278 43.0 1e-74 MKIKQVHVRASKIKLKETFTIALGTIESADSAIVEIETEEGLVGYGEGGPGIFITGETLA GTIETIELFGQAIIGLNPFNIEKIHEVMDKISAFAPAAKAAIDIACYDLMGQKAQLPLYQ LLGGYDNQVITDITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTGIEADIARVKAIREAV GFDIKLRLDANQAWTPKDAVKAIQELADYQIELVEQPVKRRDLEGLKYVTSQVNTTIMAD ESCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIECMIGCMAEETTIG ITAAAHLAAAQKNITRADLDATFGLETAPVTGGVSLEAKPLLELGEAAGLGISH >gi|307679287|gb|GL456440.1| GENE 449 420249 - 421625 1050 458 aa, chain + ## HITS:1 COG:TM0007 KEGG:ns NR:ns ## COG: TM0007 COG1305 # Protein_GI_number: 15642782 # Func_class: E Amino acid transport and metabolism # Function: Transglutaminase-like enzymes, putative cysteine proteases # Organism: Thermotoga maritima # 5 455 1 438 438 318 41.0 1e-86 MKYDLKYLSVPLPEEIQRVKEFGDFASADIAIDFWLTKELPQALKERLIIEKDVIKMMRM NEYPHSFAKADQMMRDTFQDYQTEELIRLKETGLVDWVYIDGEPYFQLRFLANLIKTNAA YVARLREAESNQLEILRKKELKENIEQMQKNGGRKVRTTIKATIQVKKEFERPGERVRVH LPLPKACQQQSEIEILATSPEATYIAAEDAPQRTLCFETILKENQTFTVEYCYVNRMVYQ QLEENNVDKMQPSFDLEEQLPHIQFTPYLRNLADEIVGDESNPLKKARLIYDFVTTKIHY SFMREYFTISNISEYAATNLKGDCGVQAILFITLCRIAGIPAKWQSGLYVSTHYTGCHDW AQFYIEPYGWLFADLSFGGGAYRDGDRQRWNHYFGNLDVFRMVANSEIQADFQPAKMQLR ADPIDNQRGEFEYENEGLPYACLIVSQERLSMEELPFD >gi|307679287|gb|GL456440.1| GENE 450 421661 - 423295 1665 544 aa, chain + ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 3 544 11 549 549 551 52.0 1e-156 MGIMLFVSTVLVGCGTTAETKIDEKATEKTSVSKKVLNLMENSEIGSMDSIFTQDEASIN AQSNVFEGLYQLDEKDQLIPAAAKEMPEISEDGKRYTIKLREDGKWSNGDAVTANDFVFA WRKLANPKNQANYFFLLEGTILNGTAITKEEKAPEELGVKALDDYTLEVTLEKPVPYFTS LLAFSPFFPQNEAFVKEKGQVYGTSSEMIVSNGPFLMKNWDQSAMSWDFVRNPDYYDKEK VKSETIHFEVLKETNTVYNLYESGELDVAVLTGDFAKQNRDNPDYEAIERSKVYSLRLNQ KRNEKPSIFANENVRKALAYALDKKSLVDNILADGSKEIYGYIPEKFVYNPETNEDFRHE AGALVKTDAKKAKEYLDKAKAELNGDVAIELLSRDGDSDRKVAEFIQGQLQETLPGLTIN VKTVPLNNAIELMRKGDYELSVGMWGPDYQDPMTFLESSVSGNRMNYSSPTFDQLIEEAT TKYANDPETRWQTLIKAEKVLVEEDAALIPLYQEARSQLIRPGVKGIQYHNFGATSTYKY AYKE Prediction of potential genes in microbial genomes Time: Tue Jul 5 20:06:27 2011 Seq name: gi|307679286|gb|GL456441.1| Enterococcus faecalis TX0411 genomic scaffold Scfld134, whole genome shotgun sequence Length of sequence - 1171 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 758 531 ## JDM1_0973 hypothetical protein 2 1 Op 2 . - CDS 758 - 1171 345 ## gi|315157439|gb|EFU01456.1| Erf family protein Predicted protein(s) >gi|307679286|gb|GL456441.1| GENE 1 2 - 758 531 252 aa, chain - ## HITS:1 COG:no KEGG:JDM1_0973 NR:ns ## KEGG: JDM1_0973 # Name: not_defined # Def: hypothetical protein # Organism: L.plantarum_JDM1 # Pathway: not_defined # 1 236 1 230 286 122 31.0 2e-26 MTNELTTELQFNVDFKASKITIQNEAQLAEMVESAVKHYSTMIFTDENIPEAKKARADLN KVVTLLDDQRKEVKNQYDKPLKDFEEKIKKYTEKISEVSSEINESIKSYEEAEKQKRSKK LQKVIAEMSENYNVSIDEIEIPSSWTNKTAFTVKGEPNKKTIEEIAASMVAVASEKERIK NDKLIVENYAKAVGLDSFSWVALIDKGSTAPELIKEIDSAVALKKEQEERERAKREHDEA IAALKTETINNK >gi|307679286|gb|GL456441.1| GENE 2 758 - 1171 345 137 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315157439|gb|EFU01456.1| ## NR: gi|315157439|gb|EFU01456.1| Erf family protein [Enterococcus faecalis TX0312] # 1 137 89 225 225 256 100.0 5e-67 GQYIVHGPFEFPNSGTNPQGLGSLTTYARRYSLSAAFGIAADKDDDGQTAAEKNNDTSKV NLISGKQLATLNDHIRQLSELSNSELDYVRNELSKELNVDVNENMPSSMFNKAVEVLKQW IQQFQPQPEENITWGQS Prediction of potential genes in microbial genomes Time: Tue Jul 5 20:06:40 2011 Seq name: gi|307679285|gb|GL456442.1| Enterococcus faecalis TX0411 genomic scaffold Scfld136, whole genome shotgun sequence Length of sequence - 4801 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 3, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 24 - 83 9.5 1 1 Op 1 . + CDS 182 - 667 545 ## COG3328 Transposase and inactivated derivatives 2 1 Op 2 . + CDS 773 - 922 104 ## Lbuc_2368 transposase mutator type - Term 1451 - 1504 8.2 3 2 Tu 1 . - CDS 1538 - 3652 1424 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 - Prom 3716 - 3775 9.1 + Prom 4185 - 4244 4.6 4 3 Tu 1 . + CDS 4408 - 4560 203 ## gi|229546323|ref|ZP_04435048.1| hypothetical protein HMPREF0349_1540 Predicted protein(s) >gi|307679285|gb|GL456442.1| GENE 1 182 - 667 545 161 aa, chain + ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 161 1 161 391 182 55.0 3e-46 MNELTTEIIATLVQKQDLDEVFRHHLEIAINQLLQTKLAAFLGYERYSYAGINTGNNRNG SYERSFDTKYGQLNLTIPRDRNGIFENHTLPAYGRHSDSLETTVIQLYTKGITTAEIAEL IEKMYGTHYSKSTVSNMTKAVDEQVQAFQQRRLASQYASVF >gi|307679285|gb|GL456442.1| GENE 2 773 - 922 104 49 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2368 NR:ns ## KEGG: Lbuc_2368 # Name: not_defined # Def: transposase mutator type # Organism: L.buchneri # Pathway: not_defined # 1 49 198 246 391 93 87.0 3e-18 MTPTESTGTWTELLGTLIKQGVKDVLLFVADGLVSLDEGLSGHFPKAKR >gi|307679285|gb|GL456442.1| GENE 3 1538 - 3652 1424 704 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 60 701 149 809 815 553 43 1e-157 MANFYGNDPFFNNDMDDVFNQLFRRMDNQNSERARYLVNGQSLTPDEFAQYRATGKLPQN NKTIEVSKDGKQAVKKGGILEKLGTNLTEQARDGLLDPVIGRENEIQETAEILSRRTKNN AILVGDAGVGKTAVVEGLAQAIVAGKVPETIQDKEIYSIDLSSLEAGTQYRGSFEENIKQ LVEEVKAAGNIILFFDEIHQILGTGATGGEDGGKGLADIIKPALSRGELSVIGATTQDEY RNTILKNAALARRFNDVVINEPTAADTLRILQGVKELYEKHHHVVLPDDVLKAAVDYSIQ YIPQRTLPDKAIDLIDMTAAHLAAKNSQTDVETLDQRLKKLEAAKEAAIKAEDFTKAADI KKSIEETKKKIKETDQKEKITATIDDVAQSVERLTGIPVSDMGANDIERLKNLDKRLKSK VIGQDEAVEMVAKAIRRNRAGFSEGNQPIGSFLFVGPTGVGKTELAKQLALDMFGNENAI IRLDMSEYADRTAVSKLIGTSAGYVGYEDNANTLTERVRRNPYSIVLLDEIEKADPQVLT LLLQVMDDGRLTDGQGNVINFKNTIIIATSNAGFGNEALSGDKQRDQSLMDKLAPFFRPE FLNRFNGIVEFSHLTKQDLSQIVELMLADVQKTLAKKSIKLEVTKAAKDWLMEQGYDEAM GARPLRRVIEQQIRDKVTDFYLDHLDVKNLKADLVDDEIVISAA >gi|307679285|gb|GL456442.1| GENE 4 4408 - 4560 203 50 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229546323|ref|ZP_04435048.1| ## NR: gi|229546323|ref|ZP_04435048.1| hypothetical protein HMPREF0349_1540 [Enterococcus faecalis TX1322] hypothetical protein HMPREF0349_1540 [Enterococcus faecalis TX1322] hypothetical protein HMPREF9496_00280 [Enterococcus faecalis TX4000] # 1 50 1 46 46 77 92.0 3e-13 MGEIACGDPILAEEYIEEYREEIDENLPTGEVFYLKTKGNSMVPTIPSDS Prediction of potential genes in microbial genomes Time: Tue Jul 5 20:06:48 2011 Seq name: gi|307679284|gb|GL456443.1| Enterococcus faecalis TX0411 genomic scaffold Scfld138, whole genome shotgun sequence Length of sequence - 910 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 54 - 359 254 ## EFA0053 hypothetical protein 2 1 Op 2 . + CDS 370 - 910 835 ## EFA0052 surface exclusion protein Sea1 Predicted protein(s) >gi|307679284|gb|GL456443.1| GENE 1 54 - 359 254 101 aa, chain + ## HITS:1 COG:no KEGG:EFA0053 NR:ns ## KEGG: EFA0053 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 101 1 101 101 151 97.0 7e-36 MTKKVQNIWRKEMLALMNEDADWYRNEDTERFKRIQELAKKIETASTRQFSSHISKERFE AYQRMGLQFKEIAEEFHITTTALQQWRKDNGYPIYNKNNKK >gi|307679284|gb|GL456443.1| GENE 2 370 - 910 835 180 aa, chain + ## HITS:1 COG:no KEGG:EFA0052 NR:ns ## KEGG: EFA0052 # Name: sea1 # Def: surface exclusion protein Sea1 # Organism: E.faecalis # Pathway: not_defined # 1 180 1 180 890 177 96.0 3e-43 MKKFASAGLSILVATGVAGIGGNEVQAAEQAQPKTPENSSTEQPAVKGTQTTEQAITEKQ QQVTEKQAIVDQKQQVADTAKKEKDTIDQSVKDQQAVVDQNKDALDQSQQAVTDQQAVVD EAKKVVDEATPSAIEKAKEQVATDTQAVDDQQKVVDQAQTDVNQQQAVVDEKAKETNAAK Prediction of potential genes in microbial genomes Time: Tue Jul 5 20:06:55 2011 Seq name: gi|307679283|gb|GL456444.1| Enterococcus faecalis TX0411 genomic scaffold Scfld148, whole genome shotgun sequence Length of sequence - 764 bp Number of predicted genes - 4, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 24 - 149 99 ## 2 1 Op 2 . + CDS 134 - 289 231 ## gi|307286466|ref|ZP_07566567.1| conserved domain protein 3 1 Op 3 . + CDS 346 - 582 336 ## gi|255972584|ref|ZP_05423170.1| predicted protein 4 1 Op 4 . + CDS 583 - 763 159 ## gi|255972585|ref|ZP_05423171.1| predicted protein Predicted protein(s) >gi|307679283|gb|GL456444.1| GENE 1 24 - 149 99 41 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTRKEKLQQTKKLADLWYQQQKNQIYIMQQKERREFRCLKQ >gi|307679283|gb|GL456444.1| GENE 2 134 - 289 231 51 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307286466|ref|ZP_07566567.1| ## NR: gi|307286466|ref|ZP_07566567.1| conserved domain protein [Enterococcus faecalis TX0109] conserved domain protein [Enterococcus faecalis TX0109] conserved domain protein [Enterococcus faecalis TX0312] conserved domain protein [Enterococcus faecalis TX1346] # 1 51 1 51 51 77 98.0 4e-13 MFKAVGKDSLKIYVVEDTKALVFQKLKEKYPDTAINKAVFPEALFIQETKK >gi|307679283|gb|GL456444.1| GENE 3 346 - 582 336 78 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|255972584|ref|ZP_05423170.1| ## NR: gi|255972584|ref|ZP_05423170.1| predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis T3] predicted protein [Enterococcus faecalis X98] hypothetical protein HMPREF9509_01826 [Enterococcus faecalis TX0411] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis T3] predicted protein [Enterococcus faecalis X98] hypothetical protein HMPREF9509_01826 [Enterococcus faecalis TX0411] # 1 78 1 78 78 132 100.0 9e-30 MRVEVDSMQRIVLIDNHSPYGSLIFEKDAINNHVAVYQDSEDEEVRTVFESLDESAYFNQ LELIKGLQKVISLLKEGE >gi|307679283|gb|GL456444.1| GENE 4 583 - 763 159 60 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|255972585|ref|ZP_05423171.1| ## NR: gi|255972585|ref|ZP_05423171.1| predicted protein [Enterococcus faecalis T1] conserved hypothetical protein [Enterococcus faecalis T3] predicted protein [Enterococcus faecalis X98] predicted protein [Enterococcus faecalis T1] conserved hypothetical protein [Enterococcus faecalis T3] predicted protein [Enterococcus faecalis X98] # 1 60 1 60 225 111 100.0 2e-23 MNENSENLKELFDGMYKLKSKLIQPRFDAEVAYSTKKGPMNFQYATLKVIEEAIRKAAQE Prediction of potential genes in microbial genomes Time: Tue Jul 5 20:07:15 2011 Seq name: gi|307679282|gb|GL456445.1| Enterococcus faecalis TX0411 genomic scaffold Scfld149, whole genome shotgun sequence Length of sequence - 6663 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 3, operones - 2 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 409 - 468 3.2 1 1 Op 1 . + CDS 513 - 830 141 ## gi|255973607|ref|ZP_05424193.1| predicted protein 2 1 Op 2 . + CDS 908 - 1789 579 ## JDM1_1188 nisin resistance protein (putative) 3 1 Op 3 . + CDS 1790 - 1927 67 ## gi|256959493|ref|ZP_05563664.1| S41 family peptidase + Term 1989 - 2030 -0.8 + Prom 1965 - 2024 8.8 4 2 Op 1 . + CDS 2059 - 2625 466 ## SDEG_1081 hypothetical protein 5 2 Op 2 . + CDS 2642 - 2833 226 ## gi|20385132|gb|AAM21181.1|AF329367_9 6 kDa protein 6 2 Op 3 . + CDS 2862 - 3398 752 ## COG1302 Uncharacterized protein conserved in bacteria + Term 3467 - 3507 7.5 + Prom 3543 - 3602 13.6 7 3 Tu 1 . + CDS 3673 - 6661 3015 ## SSP0158 truncated biofilm-associated surface protein Predicted protein(s) >gi|307679282|gb|GL456445.1| GENE 1 513 - 830 141 105 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|255973607|ref|ZP_05424193.1| ## NR: gi|255973607|ref|ZP_05424193.1| predicted protein [Enterococcus faecalis T2] hypothetical protein HMPREF9515_02016 [Enterococcus faecalis TX0860] predicted protein [Enterococcus faecalis T2] hypothetical protein HMPREF9515_02016 [Enterococcus faecalis TX0860] # 1 105 60 164 164 159 100.0 5e-38 MGILISEYYVMYRFFKPIALDEKQDFSSVQLFLNLFIFNALFMFVMLTNFHQVFVGKEFI IFGSLIGSLFFGSFMGGIFTICLKEQLKEYQKLMNQFIDIKKEVH >gi|307679282|gb|GL456445.1| GENE 2 908 - 1789 579 293 aa, chain + ## HITS:1 COG:no KEGG:JDM1_1188 NR:ns ## KEGG: JDM1_1188 # Name: nsr # Def: nisin resistance protein (putative) # Organism: L.plantarum_JDM1 # Pathway: not_defined # 43 293 41 277 323 134 31.0 5e-30 MSIKKYLLFYIISTCAIIFVSLTFFFLPLKSIDSRSYEVLHTISQYGVITNKDEWRNILE LTRYGRKVTNVDNLNTLVYVVNKHSSVKQISSDKDMDNMETLKLPSISKYEDLTIINIPS VYSNDDNFSIKYASKLTDLIEYTSGNIVLNLSNNYGGLKEPMIIGASSLIPNGMLFSNIN NKKEKYPVYLKNGKLFGGIPGTINELNLYKLSLHKKKLGKKVAVVINNNTASAAESLLLA LKNNPNVKVFGMPSAGYTSVNLGRFFTNQNSDNYWWFVYTVGYYETIKPIKGK >gi|307679282|gb|GL456445.1| GENE 3 1790 - 1927 67 45 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256959493|ref|ZP_05563664.1| ## NR: gi|256959493|ref|ZP_05563664.1| S41 family peptidase [Enterococcus faecalis DS5] S41 family peptidase [Enterococcus faecalis DS5] # 1 45 295 339 339 81 88.0 2e-14 MFNNQPVPPDYYVDLSMLDRNTQDITQFSNTKKLFKKIKNWINSD >gi|307679282|gb|GL456445.1| GENE 4 2059 - 2625 466 188 aa, chain + ## HITS:1 COG:no KEGG:SDEG_1081 NR:ns ## KEGG: SDEG_1081 # Name: not_defined # Def: hypothetical protein # Organism: S.dysgalactiae # Pathway: not_defined # 1 187 1 192 193 89 29.0 1e-16 MTKGKKILFSFISLVFGTFLFAVFVHYQFMYSLPIYFIKFEEYPFIENYIQLYLYWGSVI GMVFILLFILGIVLSPAEVTSVKLNDDKGILEIKKSAIVGIVQSQLDQSNLLRDSKVNVK MYKKKIKVRITGNTSDNLDIINQTNQLVKNIELYLKTFIGLDTSIKAEVVFKNISRSGKS KQKQKRVI >gi|307679282|gb|GL456445.1| GENE 5 2642 - 2833 226 63 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|20385132|gb|AAM21181.1|AF329367_9 ## NR: gi|20385132|gb|AAM21181.1|AF329367_9 6 kDa protein [Enterococcus faecalis] EF0054 [Enterococcus faecalis] 6 kDa protein [Enterococcus faecalis] # 1 63 1 63 63 81 98.0 2e-14 MKELFLEYKYPIIGGLIGLVLALFFFTIGFFKTILLLVMVGIGVFIGSYIKNEDLFGKFF QNK >gi|307679282|gb|GL456445.1| GENE 6 2862 - 3398 752 178 aa, chain + ## HITS:1 COG:SP1804 KEGG:ns NR:ns ## COG: SP1804 COG1302 # Protein_GI_number: 15901633 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 17 171 23 177 202 148 62.0 5e-36 MEKTKVSVKEETKKENVQGKLTYEDKVIQKIIGISLEKVEGLLTVDGGFFSNLAGKLVNT DDVTSGVVVEVGEKQVAVDLDIVAEYGKDIYKIYNEMKEIITKEVKNMTGLEVIEVNVNV VDIKTEEQHEEDSVSLQDKVGEATESVSNFASEQTEKAKELASKGSSKAKELTESRVK >gi|307679282|gb|GL456445.1| GENE 7 3673 - 6661 3015 996 aa, chain + ## HITS:1 COG:no KEGG:SSP0158 NR:ns ## KEGG: SSP0158 # Name: not_defined # Def: truncated biofilm-associated surface protein # Organism: S.saprophyticus # Pathway: not_defined # 72 488 190 620 624 184 33.0 1e-44 MFGKNNKHMILKKGRKRVLKYSIKKLSVGVASVLVGVGLVFGATGIVNAQMGEGRLVNYS ASGNTFQENPGYTKNYNFSDLQFNPKAITGDVLQGNTIDFEVYGKHNIAASTANWEIRLQ LDERLAQYVEKIQVDPKKGVGNSRRTFVRINDSLGRPTNIWKVNYIRANDGLFAGAETTD TQTAPNGVITFEKNLDEIFKEIGADNLKSDRLMYRIYLVSHQDDDKIVPGIESAGYFLTD QDDFYNKLDVSENNSDQFKHGSVNTKYEEANIQTKDGSGSTGANGAIILDHKLTKEKNFS YSTSAKGTPWYANYKIDERLVPYVSGIQMHMVQADKVAYNVSFESGKKVADLAIERREGH ENYGMGSITDNDLTKLIDFANASPRPIVVRYVLQLTKPLDEILEEMKAADKIEENAPFGE DFIFDSWLSDTNKKLIQNTYGTGYYYLQDIDGDGNPDDKEESGDTNPYIGKPELEEVYDV DTTVKGKVFIHELAGTDHKAQLVDKEGTVLAEKTIAPNEKDGAPISDTVEFEFTGVDSSK LIAKDELKIQIVSPGFDKPEEGSTVIKESPKAVDKQTVVVGFKPDAKESIRNNKNLPEDA EYSWKKEPDTSNVTDSTKGIVTVKIGNRTFDVDVEFAVKASQAMENDATYVPITTTPETT IQSGKPTFDKPDVPLANDAFSILDVYNKDFGNASVDANTGIVTFTPAKGVGESEPITGTI PIKIVYQDGSVGTTDLAVTVSKNIYENPGENIPAGYHKVTFTAGEGTSIESGTTVFAVKD GVSLSEDKLPVLKAKDGYTDAKWPEEATQPIKADDTEFVSSATKLDDIIENPGDNIPAGY HKVTFTAGEGTSIESGTTVFAVKDGVSLSEDKLPVLKAKDGYTDAKWPEEATQPIKADDT EFVSSATKLDDKSDADKYTPEGQKVTTELNKEPDASEGIKNKKDLPKDAKYTWKEKVDIS TAGNKKGTVVVTYSDGSSDEVEVDVTVTDNRSDADK Prediction of potential genes in microbial genomes Time: Tue Jul 5 20:10:30 2011 Seq name: gi|307679281|gb|GL456446.1| Enterococcus faecalis TX0411 genomic scaffold Scfld150, whole genome shotgun sequence Length of sequence - 142734 bp Number of predicted genes - 155, with homology - 151 Number of transcription units - 64, operones - 35 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 69 - 461 332 ## gi|315168283|gb|EFU12300.1| Abi-like protein + Prom 585 - 644 4.7 2 2 Op 1 29/0.000 + CDS 666 - 1322 785 ## COG0632 Holliday junction resolvasome, DNA-binding subunit 3 2 Op 2 . + CDS 1335 - 2351 1329 ## COG2255 Holliday junction resolvasome, helicase subunit + Term 2364 - 2425 11.0 - Term 2360 - 2401 3.2 4 3 Tu 1 . - CDS 2475 - 2903 339 ## EF0068 hypothetical protein - Prom 2936 - 2995 7.0 + Prom 2900 - 2959 6.1 5 4 Tu 1 . + CDS 3066 - 3488 460 ## COG3010 Putative N-acetylmannosamine-6-phosphate epimerase - Term 3578 - 3640 3.0 6 5 Tu 1 . - CDS 3846 - 3920 100 ## - Prom 3942 - 4001 3.6 + Prom 3731 - 3790 5.0 7 6 Op 1 . + CDS 3938 - 4849 912 ## EF0071 putative lipoprotein 8 6 Op 2 . + CDS 4997 - 6277 1435 ## EF0071 putative lipoprotein + Term 6283 - 6327 9.1 + Prom 6346 - 6405 16.4 9 7 Op 1 . + CDS 6652 - 6744 75 ## 10 7 Op 2 . + CDS 6824 - 7741 686 ## EF0073 Cro/CI family transcriptional regulator - Term 7733 - 7778 15.0 11 8 Tu 1 . - CDS 7784 - 8437 755 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - Prom 8586 - 8645 7.0 + Prom 8572 - 8631 10.7 12 9 Op 1 . + CDS 8711 - 9604 175 ## PROTEIN SUPPORTED gi|163797523|ref|ZP_02191474.1| 50S ribosomal protein L9 13 9 Op 2 . + CDS 9617 - 10189 624 ## EF0077 hypothetical protein 14 9 Op 3 . + CDS 10202 - 10393 311 ## EF0078 hypothetical protein 15 9 Op 4 . + CDS 10406 - 10918 807 ## COG1302 Uncharacterized protein conserved in bacteria 16 9 Op 5 . + CDS 10977 - 11537 969 ## COG1302 Uncharacterized protein conserved in bacteria 17 9 Op 6 . + CDS 11561 - 11803 474 ## COG2261 Predicted membrane protein + Term 11820 - 11862 10.3 + Prom 11952 - 12011 7.1 18 10 Op 1 . + CDS 12170 - 13405 1434 ## COG0477 Permeases of the major facilitator superfamily 19 10 Op 2 . + CDS 13426 - 13605 328 ## EF0083 hypothetical protein + Term 13623 - 13676 2.1 20 11 Op 1 . - CDS 13871 - 14401 358 ## EF0084 hypothetical protein 21 11 Op 2 . - CDS 14462 - 15355 752 ## EF0085 hypothetical protein 22 11 Op 3 . - CDS 15349 - 16836 892 ## EF0086 hypothetical protein + Prom 17430 - 17489 3.8 23 12 Tu 1 . + CDS 17546 - 23644 7175 ## COG4932 Predicted outer membrane protein + Term 23655 - 23713 18.2 + Prom 23815 - 23874 8.3 24 13 Op 1 . + CDS 23921 - 24832 997 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase + Prom 24834 - 24893 4.2 25 13 Op 2 . + CDS 24914 - 26419 1441 ## EF0091 hypothetical protein + Term 26503 - 26567 20.5 26 14 Op 1 . + CDS 26755 - 26994 336 ## EF0092 hypothetical protein 27 14 Op 2 . + CDS 27009 - 29951 1833 ## EF0093 cell wall surface anchor family protein + Term 29975 - 30022 11.1 + Prom 29972 - 30031 6.9 28 15 Op 1 . + CDS 30128 - 30889 920 ## COG2116 Formate/nitrite family of transporters + Term 30910 - 30952 6.4 + Prom 30958 - 31017 5.0 29 15 Op 2 . + CDS 31045 - 31830 695 ## EF0095 putative lipoprotein + Term 31847 - 31897 18.1 - Term 31832 - 31884 11.0 30 16 Tu 1 . - CDS 31890 - 32570 656 ## COG2964 Uncharacterized protein conserved in bacteria - Prom 32767 - 32826 9.9 + Prom 32636 - 32695 7.1 31 17 Op 1 1/0.167 + CDS 32827 - 33933 1399 ## COG1299 Phosphotransferase system, fructose-specific IIC component 32 17 Op 2 9/0.000 + CDS 33908 - 34615 885 ## COG1760 L-serine deaminase 33 17 Op 3 . + CDS 34630 - 35523 1137 ## COG1760 L-serine deaminase 34 17 Op 4 . + CDS 35550 - 36821 1405 ## COG0172 Seryl-tRNA synthetase + Term 36826 - 36865 8.6 - Term 36814 - 36853 8.6 35 18 Tu 1 . - CDS 36858 - 37772 579 ## COG2267 Lysophospholipase - Prom 37793 - 37852 8.4 - Term 37834 - 37868 3.1 36 19 Tu 1 . - CDS 37938 - 38417 378 ## COG1438 Arginine repressor + Prom 38445 - 38504 5.3 37 20 Tu 1 . + CDS 38660 - 39148 508 ## COG1438 Arginine repressor + Term 39151 - 39203 20.4 + Prom 39221 - 39280 19.4 38 21 Op 1 7/0.000 + CDS 39445 - 40671 1429 ## PROTEIN SUPPORTED gi|149020061|ref|ZP_01835035.1| 50S ribosomal protein L33 39 21 Op 2 8/0.000 + CDS 40700 - 41719 1400 ## COG0078 Ornithine carbamoyltransferase + Term 41759 - 41801 9.4 + Prom 41744 - 41803 3.4 40 22 Op 1 . + CDS 41825 - 42757 1206 ## COG0549 Carbamate kinase 41 22 Op 2 . + CDS 42782 - 43474 385 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 42 22 Op 3 . + CDS 43522 - 44973 1416 ## COG1288 Predicted membrane protein + Term 45025 - 45078 13.4 - Term 45017 - 45061 11.0 43 23 Op 1 . - CDS 45064 - 45744 614 ## COG0693 Putative intracellular protease/amidase 44 23 Op 2 . - CDS 45741 - 46076 422 ## EF0110 ArsR family transcriptional regulator - Prom 46104 - 46163 5.0 + Prom 46027 - 46086 6.1 45 24 Tu 1 . + CDS 46256 - 47272 1052 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases + Term 47274 - 47335 4.6 + Prom 47375 - 47434 8.4 46 25 Tu 1 . + CDS 47504 - 49990 444 ## PROTEIN SUPPORTED gi|149001861|ref|ZP_01826834.1| 30S ribosomal protein S4 + Prom 50333 - 50392 7.1 47 26 Tu 1 . + CDS 50419 - 51687 1345 ## COG0251 Putative translation initiation inhibitor, yjgF family + Term 51697 - 51751 16.4 - Term 51693 - 51733 12.2 48 27 Op 1 . - CDS 51737 - 52180 412 ## COG4815 Uncharacterized protein conserved in bacteria 49 27 Op 2 . - CDS 52177 - 53589 1147 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs - Prom 53621 - 53680 6.8 + Prom 53597 - 53656 4.4 50 28 Op 1 . + CDS 53687 - 54652 874 ## COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog 51 28 Op 2 . + CDS 54654 - 55442 851 ## COG0384 Predicted epimerase, PhzC/PhzF homolog + Term 55446 - 55500 17.1 - Term 55434 - 55487 15.6 52 29 Tu 1 . - CDS 55491 - 56036 670 ## EF0120 hypothetical protein - Prom 56069 - 56128 4.6 - Term 56054 - 56106 4.1 53 30 Op 1 . - CDS 56203 - 56580 260 ## EF0122 hypothetical protein 54 30 Op 2 . - CDS 56590 - 58458 1736 ## COG5492 Bacterial surface proteins containing Ig-like domains - Prom 58486 - 58545 10.3 + Prom 59043 - 59102 7.3 55 31 Op 1 . + CDS 59309 - 59623 408 ## smi_1320 hypothetical protein 56 31 Op 2 . + CDS 59644 - 60021 571 ## smi_1321 hypothetical protein 57 31 Op 3 . + CDS 60031 - 60804 610 ## smi_1322 hypothetical protein 58 31 Op 4 1/0.167 + CDS 60826 - 62229 972 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins + Term 62354 - 62402 3.6 + Prom 62315 - 62374 2.3 59 32 Op 1 . + CDS 62411 - 63595 946 ## COG2946 Putative phage replication protein RstA 60 32 Op 2 . + CDS 63592 - 63864 199 ## lmo1110 hypothetical protein 61 32 Op 3 . + CDS 63861 - 64082 358 ## smi_1325 hypothetical protein 62 32 Op 4 . + CDS 64142 - 64903 501 ## smi_1326 hypothetical protein 63 32 Op 5 . + CDS 64965 - 65465 661 ## smi_1327 hypothetical protein 64 32 Op 6 . + CDS 65537 - 66562 490 ## gi|314937367|ref|ZP_07844704.1| hypothetical protein HMPREF9525_00050 + Term 66576 - 66612 3.4 65 33 Op 1 . + CDS 66633 - 67028 298 ## SAV0403 hypothetical protein 66 33 Op 2 . + CDS 67012 - 69465 1952 ## smi_1330 ATP/GTP-binding protein 67 33 Op 3 . + CDS 69462 - 71489 987 ## SAV0401 hypothetical protein 68 33 Op 4 . + CDS 71486 - 72508 1009 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) 69 33 Op 5 . + CDS 72525 - 73454 768 ## SAV0399 hypothetical protein + Term 73464 - 73508 11.1 + Prom 73595 - 73654 6.8 70 34 Tu 1 . + CDS 73706 - 75625 966 ## COG0480 Translation elongation factors (GTPases) 71 35 Tu 1 . - CDS 75969 - 76322 465 ## smi_1336 transcriptional regulator, Tn916 - Prom 76479 - 76538 6.3 + Prom 76245 - 76304 5.9 72 36 Tu 1 . + CDS 76554 - 76664 77 ## + Term 76679 - 76726 7.0 + Prom 76693 - 76752 4.2 73 37 Op 1 . + CDS 76853 - 77275 338 ## SAV0395 hypothetical protein 74 37 Op 2 . + CDS 77272 - 77502 292 ## smi_1339 polyribonucleotide nucleotidyltransferase (EC:2.7.7.8) + Term 77542 - 77570 -0.2 + Prom 77875 - 77934 7.4 75 38 Op 1 . + CDS 78000 - 78200 237 ## SAV0393 hypothetical protein 76 38 Op 2 . + CDS 78227 - 79420 887 ## COG0582 Integrase - Term 79423 - 79486 19.1 77 39 Tu 1 . - CDS 79488 - 81050 1882 ## COG0519 GMP synthase, PP-ATPase domain/subunit - Prom 81258 - 81317 5.5 78 40 Tu 1 . - CDS 81362 - 82285 918 ## COG1072 Panthothenate kinase - Prom 82344 - 82403 5.6 + Prom 82351 - 82410 4.0 79 41 Op 1 . + CDS 82440 - 83027 750 ## COG2755 Lysophospholipase L1 and related esterases 80 41 Op 2 . + CDS 83042 - 83638 740 ## COG2813 16S RNA G1207 methylase RsmC + Term 83646 - 83675 2.1 - Term 83332 - 83372 -0.7 81 42 Tu 1 . - CDS 83605 - 84684 900 ## COG1816 Adenosine deaminase - Prom 84750 - 84809 8.4 + Prom 84707 - 84766 10.4 82 43 Tu 1 . + CDS 84844 - 85851 998 ## COG1609 Transcriptional regulators + Prom 85908 - 85967 6.6 83 44 Op 1 7/0.000 + CDS 85992 - 87293 1750 ## COG0213 Thymidine phosphorylase 84 44 Op 2 3/0.056 + CDS 87321 - 87983 900 ## COG0274 Deoxyribose-phosphate aldolase 85 44 Op 3 3/0.056 + CDS 88021 - 88416 380 ## COG0295 Cytidine deaminase + Prom 88430 - 88489 3.3 86 45 Op 1 2/0.111 + CDS 88512 - 89585 1400 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein 87 45 Op 2 15/0.000 + CDS 89639 - 90724 1432 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein + Term 90782 - 90825 7.1 + Prom 90770 - 90829 3.8 88 46 Op 1 24/0.000 + CDS 90930 - 92498 1999 ## COG3845 ABC-type uncharacterized transport systems, ATPase components 89 46 Op 2 26/0.000 + CDS 92491 - 93624 1169 ## COG4603 ABC-type uncharacterized transport system, permease component 90 46 Op 3 . + CDS 93624 - 94577 1179 ## COG1079 Uncharacterized ABC-type transport system, permease component + Term 94590 - 94626 7.0 + Prom 94753 - 94812 6.9 91 47 Tu 1 . + CDS 94845 - 95438 412 ## COG3548 Predicted integral membrane protein + Term 95507 - 95541 -0.4 + Prom 95641 - 95700 5.6 92 48 Op 1 4/0.056 + CDS 95740 - 96906 1509 ## COG1015 Phosphopentomutase 93 48 Op 2 1/0.167 + CDS 96923 - 97741 1175 ## COG0005 Purine nucleoside phosphorylase 94 48 Op 3 . + CDS 97759 - 98466 906 ## COG0813 Purine-nucleoside phosphorylase + Term 98472 - 98512 7.1 - Term 98459 - 98499 7.1 95 49 Tu 1 . - CDS 98505 - 99443 1222 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component - Prom 99639 - 99698 8.5 + Prom 99557 - 99616 9.6 96 50 Op 1 35/0.000 + CDS 99680 - 100480 259 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Term 100511 - 100539 -0.0 97 50 Op 2 20/0.000 + CDS 100567 - 101487 769 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 98 50 Op 3 . + CDS 101484 - 102488 1002 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component + Prom 102530 - 102589 5.5 99 51 Tu 1 . + CDS 102617 - 103804 1414 ## COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family + Term 103854 - 103896 -0.5 - Term 103805 - 103836 3.4 100 52 Tu 1 . - CDS 103875 - 104561 932 ## COG0588 Phosphoglycerate mutase 1 - Prom 104606 - 104665 5.9 - Term 104681 - 104735 12.5 101 53 Op 1 . - CDS 104736 - 105311 531 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs 102 53 Op 2 . - CDS 105353 - 106033 927 ## COG0120 Ribose 5-phosphate isomerase - Prom 106060 - 106119 3.9 + Prom 106163 - 106222 5.1 103 54 Op 1 56/0.000 + CDS 106378 - 106791 706 ## PROTEIN SUPPORTED gi|227555846|ref|ZP_03985893.1| 30S ribosomal protein S12 104 54 Op 2 51/0.000 + CDS 106847 - 107317 806 ## PROTEIN SUPPORTED gi|29374845|ref|NP_813998.1| 30S ribosomal protein S7 + Prom 107319 - 107378 1.9 105 54 Op 3 30/0.000 + CDS 107401 - 109482 2457 ## COG0480 Translation elongation factors (GTPases) + Prom 109493 - 109552 7.2 106 54 Op 4 . + CDS 109633 - 110820 1486 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 + Term 110873 - 110915 7.7 + Prom 110921 - 110980 3.1 107 55 Tu 1 . + CDS 111001 - 111825 1027 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase + Term 111840 - 111874 -0.3 + Prom 111888 - 111947 7.0 108 56 Op 1 . + CDS 112097 - 113263 1111 ## COG2230 Cyclopropane fatty acid synthase and related methyltransferases + Term 113280 - 113328 9.5 109 56 Op 2 . + CDS 113332 - 113466 48 ## PROTEIN SUPPORTED gi|227515486|ref|ZP_03945535.1| ribosomal protein S10 110 56 Op 3 . + CDS 113473 - 113544 84 ## 111 56 Op 4 40/0.000 + CDS 113576 - 113920 576 ## PROTEIN SUPPORTED gi|227519991|ref|ZP_03950040.1| 30S ribosomal protein S10 112 56 Op 5 58/0.000 + CDS 113942 - 114571 1059 ## PROTEIN SUPPORTED gi|29374851|ref|NP_814004.1| 50S ribosomal protein L3 113 56 Op 6 61/0.000 + CDS 114597 - 115220 1033 ## PROTEIN SUPPORTED gi|227519993|ref|ZP_03950042.1| 50S ribosomal protein L4 114 56 Op 7 61/0.000 + CDS 115220 - 115510 471 ## PROTEIN SUPPORTED gi|29374853|ref|NP_814006.1| ribosomal protein L23 115 56 Op 8 60/0.000 + CDS 115550 - 116380 1431 ## PROTEIN SUPPORTED gi|29374854|ref|NP_814007.1| 50S ribosomal protein L2 116 56 Op 9 59/0.000 + CDS 116423 - 116701 486 ## PROTEIN SUPPORTED gi|29374855|ref|NP_814008.1| 30S ribosomal protein S19 117 56 Op 10 61/0.000 + CDS 116717 - 117070 564 ## PROTEIN SUPPORTED gi|227519997|ref|ZP_03950046.1| 50S ribosomal protein L22 118 56 Op 11 50/0.000 + CDS 117137 - 117793 1112 ## PROTEIN SUPPORTED gi|29374857|ref|NP_814010.1| 30S ribosomal protein S3 119 56 Op 12 50/0.000 + CDS 117796 - 118230 753 ## PROTEIN SUPPORTED gi|29374858|ref|NP_814011.1| 50S ribosomal protein L16 120 56 Op 13 50/0.000 + CDS 118220 - 118408 296 ## PROTEIN SUPPORTED gi|29374859|ref|NP_814012.1| ribosomal protein L29 121 56 Op 14 50/0.000 + CDS 118411 - 118698 476 ## PROTEIN SUPPORTED gi|227520001|ref|ZP_03950050.1| 30S ribosomal protein S17 122 56 Op 15 57/0.000 + CDS 118756 - 119124 591 ## PROTEIN SUPPORTED gi|29374861|ref|NP_814014.1| ribosomal protein L14 123 56 Op 16 48/0.000 + CDS 119160 - 119471 517 ## PROTEIN SUPPORTED gi|29374862|ref|NP_814015.1| 50S ribosomal protein L24 124 56 Op 17 50/0.000 + CDS 119497 - 120036 896 ## PROTEIN SUPPORTED gi|29374863|ref|NP_814016.1| 50S ribosomal protein L5 125 56 Op 18 50/0.000 + CDS 120055 - 120240 333 ## PROTEIN SUPPORTED gi|29374864|ref|NP_814017.1| 30S ribosomal protein S14 126 56 Op 19 55/0.000 + CDS 120276 - 120674 660 ## PROTEIN SUPPORTED gi|29374865|ref|NP_814018.1| 30S ribosomal protein S8 127 56 Op 20 46/0.000 + CDS 120706 - 121242 909 ## PROTEIN SUPPORTED gi|227520007|ref|ZP_03950056.1| 50S ribosomal protein L6 + Term 121285 - 121326 4.1 + Prom 121298 - 121357 3.5 128 56 Op 21 56/0.000 + CDS 121394 - 121759 599 ## PROTEIN SUPPORTED gi|227520008|ref|ZP_03950057.1| 50S ribosomal protein L18 129 56 Op 22 50/0.000 + CDS 121780 - 122280 817 ## PROTEIN SUPPORTED gi|29374868|ref|NP_814021.1| ribosomal protein S5 130 56 Op 23 48/0.000 + CDS 122295 - 122474 286 ## PROTEIN SUPPORTED gi|29374869|ref|NP_814022.1| ribosomal protein L30 131 56 Op 24 53/0.000 + CDS 122522 - 122962 731 ## PROTEIN SUPPORTED gi|29374870|ref|NP_814023.1| 50S ribosomal protein L15 132 56 Op 25 28/0.000 + CDS 122963 - 124261 762 ## PROTEIN SUPPORTED gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 + Term 124269 - 124305 5.7 133 56 Op 26 6/0.000 + CDS 124348 - 124998 834 ## COG0563 Adenylate kinase and related kinases + Term 125141 - 125174 2.0 + Prom 125022 - 125081 7.0 134 56 Op 27 . + CDS 125209 - 125427 311 ## PROTEIN SUPPORTED gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 135 56 Op 28 . + CDS 125460 - 125576 210 ## PROTEIN SUPPORTED gi|29374874|ref|NP_814027.1| 50S ribosomal protein L36 136 56 Op 29 48/0.000 + CDS 125596 - 125961 606 ## PROTEIN SUPPORTED gi|29374875|ref|NP_814028.1| 30S ribosomal protein S13 137 56 Op 30 32/0.000 + CDS 125989 - 126378 654 ## PROTEIN SUPPORTED gi|29374876|ref|NP_814029.1| 30S ribosomal protein S11 138 56 Op 31 50/0.000 + CDS 126459 - 127397 1219 ## COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit 139 56 Op 32 . + CDS 127471 - 127854 618 ## PROTEIN SUPPORTED gi|29374878|ref|NP_814031.1| 50S ribosomal protein L17 + Term 127888 - 127941 1.0 + Prom 128017 - 128076 7.7 140 57 Op 1 . + CDS 128129 - 129328 1392 ## EF0235 hypothetical protein 141 57 Op 2 . + CDS 129344 - 130519 1254 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase + Term 130531 - 130573 9.1 + Prom 130576 - 130635 7.4 142 58 Op 1 15/0.000 + CDS 130721 - 131560 1079 ## COG1122 ABC-type cobalt transport system, ATPase component 143 58 Op 2 34/0.000 + CDS 131536 - 132405 440 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 144 58 Op 3 8/0.000 + CDS 132405 - 133199 738 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 145 58 Op 4 . + CDS 133218 - 133967 827 ## COG0101 Pseudouridylate synthase + Term 133971 - 134015 8.2 - Term 133950 - 134008 14.2 146 59 Tu 1 . - CDS 134018 - 134329 588 ## COG0393 Uncharacterized conserved protein - Prom 134356 - 134415 3.4 - Term 134396 - 134449 15.1 147 60 Op 1 . - CDS 134462 - 135817 1634 ## COG1114 Branched-chain amino acid permeases - Prom 135844 - 135903 3.7 148 60 Op 2 . - CDS 135908 - 136399 447 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 136435 - 136494 8.9 + Prom 136431 - 136490 8.5 149 61 Tu 1 . + CDS 136588 - 137157 638 ## COG1611 Predicted Rossmann fold nucleotide-binding protein + Term 137163 - 137207 8.1 - Term 137142 - 137201 20.1 150 62 Op 1 34/0.000 - CDS 137202 - 137942 279 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 151 62 Op 2 . - CDS 137954 - 139537 1927 ## COG0765 ABC-type amino acid transport system, permease component - Prom 139635 - 139694 3.5 - Term 140044 - 140095 10.6 152 63 Tu 1 . - CDS 140096 - 140392 394 ## EF0248 hypothetical protein - Prom 140416 - 140475 5.7 + Prom 140486 - 140545 6.1 153 64 Op 1 . + CDS 140565 - 141278 803 ## COG0846 NAD-dependent protein deacetylases, SIR2 family 154 64 Op 2 . + CDS 141283 - 142128 968 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 155 64 Op 3 . + CDS 142139 - 142651 602 ## COG1827 Predicted small molecule binding protein (contains 3H domain) + Term 142655 - 142710 0.6 Predicted protein(s) >gi|307679281|gb|GL456446.1| GENE 1 69 - 461 332 130 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315168283|gb|EFU12300.1| ## NR: gi|315168283|gb|EFU12300.1| Abi-like protein [Enterococcus faecalis TX1341] # 1 130 195 324 324 273 99.0 4e-72 MILGIPKEIADEGITNMFTDIIFLCHSYRNRAAHGGRMYNYRSAKAVIRYSENFHPRANI TQAEYRKGKGISCLGTLFHALTWMDNKVALARLQAGVSVALDQHLKVYPEDYDLVLSESN INPKFLQLSR >gi|307679281|gb|GL456446.1| GENE 2 666 - 1322 785 218 aa, chain + ## HITS:1 COG:L0266 KEGG:ns NR:ns ## COG: L0266 COG0632 # Protein_GI_number: 15674189 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, DNA-binding subunit # Organism: Lactococcus lactis # 15 217 1 197 197 191 53.0 1e-48 MEHMYAISNWKGDNMYEYIIGKVTFVSPYYIVVETNGIGYQISVDNPYRYSGKMDTDIKL YLHQVVREDAQLLFGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGED VTYLTKFPGVGKKTAQQMILDLKGKLGELESSEAAVAAMTATEALTTSNQALAEALEALS ALGYSDREIKRITKQLEALGETTTDVYLSNALKFMMKR >gi|307679281|gb|GL456446.1| GENE 3 1335 - 2351 1329 338 aa, chain + ## HITS:1 COG:SP0259 KEGG:ns NR:ns ## COG: SP0259 COG2255 # Protein_GI_number: 15900193 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, helicase subunit # Organism: Streptococcus pneumoniae TIGR4 # 6 334 3 331 332 466 71.0 1e-131 MTEEERLLSAASQEAEASIEKSLRPQFLAQYIGQDKVKQELTIYIEAAKNRNEALDHTLL YGPPGLGKTTMAMVIANEMNVNIRTTSGPAIERAGDLVAILNELEPGDVLFIDEIHRLPR VVEEMLYSAMEDFYIDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISH MEYYQEQDLKEIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQSDG KIDRAIADKALTLLQVDHQGLDYVDQKLLKTMIDLYGGGPVGLSTLSVNIGEETETVEDM YEPYLIQKGFIKRTPRGRIATPFAYAHFGYDYLEGHKN >gi|307679281|gb|GL456446.1| GENE 4 2475 - 2903 339 142 aa, chain - ## HITS:1 COG:no KEGG:EF0068 NR:ns ## KEGG: EF0068 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 142 4 145 145 260 97.0 1e-68 MTEYIYLASEQPLSTGSITLNGLSKPTGNLLNKEFFFFINDFEGDPPGKFSYSNYLKTLN YQVCSMCSLPSDNQNIETPSAVALLGYIRNHFKNTCTTKLYILSALNGFENKPISKTVTR KLSDLSYKDLYYQEMKLLKIIR >gi|307679281|gb|GL456446.1| GENE 5 3066 - 3488 460 140 aa, chain + ## HITS:1 COG:BB0644 KEGG:ns NR:ns ## COG: BB0644 COG3010 # Protein_GI_number: 15594989 # Func_class: G Carbohydrate transport and metabolism # Function: Putative N-acetylmannosamine-6-phosphate epimerase # Organism: Borrelia burgdorferi # 4 138 6 140 232 165 64.0 2e-41 MNKEIKGALIVSCQALADEPLHSSFIMSKMALAAKQGGAKGIRANSVVDIRAIRKEVDLP IIGIIKRDYPDAEVYITATMREVDELMAVQPEIIALDATHSKRPNGETLATFFKRIKEKY PNQEWMADCSTLEEMIEAAG >gi|307679281|gb|GL456446.1| GENE 6 3846 - 3920 100 24 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIALYTLIYYQQGLCQMECIPFYY >gi|307679281|gb|GL456446.1| GENE 7 3938 - 4849 912 303 aa, chain + ## HITS:1 COG:no KEGG:EF0071 NR:ns ## KEGG: EF0071 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 303 1 303 779 564 98.0 1e-159 MKGLSKKKRMSTWLALGITVVSCFALSGEVQASVERTKVDEFANVLDVSASPTERTNGVY DTNYFNNFSDLGAWHGYYLPEKSNKELLGGFAGPLIIAEEYPVNLAASLNKLTVKNKKTG ETYDLSQSNRMDLSYYPGRLEQTYELDDLTIHLALIFVSNRTALIQTTLENTGEEPLSLE ASWTGAVFDKIQEGTETLDIGTRLTAKDNDIQVNFGEVREMWNYFATKDTKYTIHHADKV STKIDNRNYTATAEPIELKPKQTYNTYTTESYTFTKEEEAKEQQQAPEYTKNAARYFKEN KQR >gi|307679281|gb|GL456446.1| GENE 8 4997 - 6277 1435 426 aa, chain + ## HITS:1 COG:no KEGG:EF0071 NR:ns ## KEGG: EF0071 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 426 354 779 779 815 100.0 0 MSYKWFIGMWAWDSWKADVATADFNPELAKNNMRALFDYQIQKDDTVRPQDAGAIIDAVF YNQDSARGGEGGNWNERNSKPPLAAWAVWHIYQETKDKEFLKEMYPKLVAYHNWWYTNRD HNKNGIAEYGSMVSDAHWQKDDKDQIIKDKNGQPKVDDDAVIEAAAWESGMDNATRFDKE GVGKGDVGVKVFENKNKGKVVGYSINQESVDLNAYLYAEKGYLASIAEELGKKEDYKNYQ KEAKKLKKYIQENMFDEKTGFFYDLQINEDGSKTKLLVNRGKGTEGWLPLWAKVATKEQA AAVKKNMMNQEMFNTFMPFPTASKDNEKFAATKYWRGPVWLDQALFGVEALQNYDYTKEA KEMTQKLFLHAEGLMGEGPIHENYDPLTGKGLSTKNFSWSAAAYYLLYKNTLLSNNPTTQ TAFEIK >gi|307679281|gb|GL456446.1| GENE 9 6652 - 6744 75 30 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIIKILQYYNYGNNKNEYFEIFINVFADFV >gi|307679281|gb|GL456446.1| GENE 10 6824 - 7741 686 305 aa, chain + ## HITS:1 COG:no KEGG:EF0073 NR:ns ## KEGG: EF0073 # Name: not_defined # Def: Cro/CI family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 305 1 305 305 564 99.0 1e-159 MDVLGALKYFRKKKKIAQKDVLPKKGKQTYRRIEIGEAKLSYEDLMTALQSLGITFNEFF FMVSDTRIMASSEVKHQIECCQMGLNNTSEKKNLIHYFYQLERNPHKNALEMSIYTDIKL TFSNDWEEIPEFDETDRMVILALISSKSYYTYCDYQMVTNPAALFSENEVLQILEQMFPV KDAELRDTQTLNVAYGFYLNIITGELYKKNYAKAREYLALVSVTTIPAEIYYIHFNLRYL KNLTYYLYTGKMRYYKEVIAVIDMIESFGDVRLAEGMKKEMLQLTAGRTFNLEKGQFPLN IVTEK >gi|307679281|gb|GL456446.1| GENE 11 7784 - 8437 755 217 aa, chain - ## HITS:1 COG:lin1218 KEGG:ns NR:ns ## COG: lin1218 COG0664 # Protein_GI_number: 16800287 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Listeria innocua # 2 216 3 218 219 275 64.0 6e-74 MRNVLQDYLDEHSFRVVVKKKKNYLTYEGLQDRYAYILKSGIIKTSVISKDGREFNLRYI NNLEIVSLLRDEYSEFIDAPFNIRIESPQAELYQIDRVQFWRDINNSKDLQMYVKEYYRD RLMHSMKKMQQMLMNGKFGAVCTQIYEMYDSFGVETEEGILIDFVVTNEEIAHFCGITSA SSVNRMMQQLKELGAIELRNRKILIKDLDMIRDNIIV >gi|307679281|gb|GL456446.1| GENE 12 8711 - 9604 175 297 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163797523|ref|ZP_02191474.1| 50S ribosomal protein L9 [alpha proteobacterium BAL199] # 54 270 7 223 259 72 26 1e-11 MTEPNLKDPRKLFYSDGFPQQDQETPALQDKMVPKPDCGEDSYVGNHKLENRRVLITGGD SGIGRAAAIAFAREGADIALHFFPGEEKDAEEVAHYIREAGRKVVLLPADLRDKQAPEKL VAQAHEALGGLDTLVLNAAQQISCAAIEELPMEQVIDTFHVNIIAMFGIVKAAVPHLPAG SSIVTTTSVQAFNPSEHLLDYAATKASIANFTVGLAKQLAPKGIRVNGVAPGPIWTPLQL DHGQPIEELPEFGQHSLLERAGQPAELAPVYVFLASNDASYVTAQVYGVTGGEAINL >gi|307679281|gb|GL456446.1| GENE 13 9617 - 10189 624 190 aa, chain + ## HITS:1 COG:no KEGG:EF0077 NR:ns ## KEGG: EF0077 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 190 1 190 190 314 99.0 1e-84 MNKVVKILLLLGSLILMALFGAVAITTWSADTAWQPPDNVQWFLQDNEYARQAIFWVALV LLGIMLFLFLFILLFPRRKGTFELKEEQGKLVLHRKAIEGFVRSSLQDSDFLEAPTIRVK TTKRRIKVNVKGTLKRTADLIGQTEAWSKTMEERLARLVGTGHKITIDVHFEDIQSMKRP QQQQTQARVE >gi|307679281|gb|GL456446.1| GENE 14 10202 - 10393 311 63 aa, chain + ## HITS:1 COG:no KEGG:EF0078 NR:ns ## KEGG: EF0078 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 63 1 63 63 79 100.0 5e-14 MVEWIKQYAVPLIGGLVGLVFAILFLSIGFFKTLLVVLLTGLGIWLGLYLEQTGIVKNYF HHK >gi|307679281|gb|GL456446.1| GENE 15 10406 - 10918 807 170 aa, chain + ## HITS:1 COG:SP1804 KEGG:ns NR:ns ## COG: SP1804 COG1302 # Protein_GI_number: 15901633 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 9 170 23 184 202 149 51.0 2e-36 MENANVSIVKGELTFEDKVIQKIIGIALEEVDGLLTVDGGFFSNLRDKMINSEDVTTGIH TEVGKKQVAVDMDIVAEYGKDIETIYDQMKEVITREVQQMTHLEVIEVNVNVVDIKTQAE YQEESETVQDKLGNAAEATGSFMSKQTNKAKHAVTKGKTKVKENTAPRVQ >gi|307679281|gb|GL456446.1| GENE 16 10977 - 11537 969 186 aa, chain + ## HITS:1 COG:SP1804 KEGG:ns NR:ns ## COG: SP1804 COG1302 # Protein_GI_number: 15901633 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 186 1 184 202 167 55.0 1e-41 MSNEKFNNVPKPAGNGPHTPEDHAIKGELTFEDKVVQKIIGLALENVDGLLTVDGGFFSN IAEKLVNTDNVTAGIDTEVGKKQVAVDMDIVVEYGKDIQDIYEKMKELISREVKKMTHLD VIEVNVNVVDIKSKEEYEEDSETVQDKVTGAAKSTGEFASEQTEKAKKAVNKGTEQVKEN MEPRVE >gi|307679281|gb|GL456446.1| GENE 17 11561 - 11803 474 80 aa, chain + ## HITS:1 COG:SPy1265 KEGG:ns NR:ns ## COG: SPy1265 COG2261 # Protein_GI_number: 15675224 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 1 79 1 79 82 68 69.0 3e-12 MGFIWALIVGGVIGAIAGAITKKGSSMGIIANIIAGLVGSTIGQAILGTWGPSLAGMAIV PSIIGAVILVAIVSWILGRK >gi|307679281|gb|GL456446.1| GENE 18 12170 - 13405 1434 411 aa, chain + ## HITS:1 COG:lin1217 KEGG:ns NR:ns ## COG: lin1217 COG0477 # Protein_GI_number: 16800286 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 8 391 4 386 401 467 67.0 1e-131 MTEQTPTKLLNKGFISITVINFIVYLVYYLLMVIIAVIAQDSLHATLGQAGLASGIYIIG TLLARLFMGKLLELIGRKQVLRYGALFYLLTTVAYMYMPSMGILYLVRFLNGFGYGTVST ATNAIVTAYIPKNKKGEGINYYGLSTSLAAGIGPFIGMLLLNVSNFHVIINFSIILILLT TIACFIFPVKNIELTPEHREALSKWNFDSFVEKKVLFITFIAFLMGLAYSSVLSFLSSYV KVIDLVDVSTFFFIVYAVVITLTRPSTGRIFDVKGERYVMYPSYIFLTLGLFLLSMTTSG WMLLVSGGLIGLGYGTFMSNGQAVCLQESPSPHRIGIALSTYFIGLDLGLGVGPYVLGEL RNFMSFQQMYFLAGCIPIVCTILYMVFHKAKNDAKDLSLETIEEIEHGSEL >gi|307679281|gb|GL456446.1| GENE 19 13426 - 13605 328 59 aa, chain + ## HITS:1 COG:no KEGG:EF0083 NR:ns ## KEGG: EF0083 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 59 1 59 59 77 100.0 2e-13 MPNDERILNVLQQTLTEIQRMNTRLAKIETELADVDQHHATLDHYLQELELVTENNNVM >gi|307679281|gb|GL456446.1| GENE 20 13871 - 14401 358 176 aa, chain - ## HITS:1 COG:no KEGG:EF0084 NR:ns ## KEGG: EF0084 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 50 176 1 127 127 221 98.0 1e-56 MTFHEYLYLYTSIQNLSVFFKTFVTIANPFVQESFLKEALQKNPSLYKDVKRLTIEMLPT LMGNEKLLVDCLFILFCTLKTKSLPPIRVLVRTNQSNLILDTLYEKLSKAVDKKLIFVAS PEKPFDVIITDIFSEVSVKSTVPTYYVDFSASIGELAQSLENLNTQIVTKQSPRHF >gi|307679281|gb|GL456446.1| GENE 21 14462 - 15355 752 297 aa, chain - ## HITS:1 COG:no KEGG:EF0085 NR:ns ## KEGG: EF0085 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 297 1 297 367 502 100.0 1e-141 MLTGLLDVPYRKSFALLEELLERREAEEQTLAISTLATQLKMQQNTILQSVALLQTEIEK NGWENLFSLSANAKEITFWFAPYFQLSFLMPYFVKKSFAYQVLTYAFNHNAIDSKHFEKV LEISSSTFTRKIGQLNQWLQKYQIEINLKRTNVLVGKEKDIRIFFMMLFWNNYSEGDWPL HTITKKEVHSLFRRLKHSVSFNTTQDFTKDLIFSAVILARWKEGFFIKETFVEEEAIVNP FVNLSEFELFFKEEALHQVPTKFIQKEGLFAFFLLTISVSYATQDVLEIPAARMHMV >gi|307679281|gb|GL456446.1| GENE 22 15349 - 16836 892 495 aa, chain - ## HITS:1 COG:no KEGG:EF0086 NR:ns ## KEGG: EF0086 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 495 1 495 495 916 100.0 0 MYNLLTKQEIQLLSLIEYLYDSKEKVPMQVLRRKYEFSHYNINNLLNQLTLLISRVNTHE NVHIRIINNQQSIELVADENIPIELMKEAVVRGSLTYMLALDLLLKRYTSAKDFCEEHFI NFSIFKQVSDRLNNHLARFNCYLNLKRREKICGNEKDFRSFFYSLFFISGTSLVPFLSKT NQAQLQNFIEIIKNRYPYFTYTDLRKLKLIMSIGLLRYQSGFTITNYPEVAAINLAFPYS EFQLLVNDCFIDEQKEPDTWQAEIHFYYDFFSTLTMYSLVQMETINFANLAIMGMDNSPH ATWIFEKCTQLQLDLSAIEVVFLLVNLSNASERLIHFPVEEELSYEVANVSLYEKQYPNV SRTTNYFLKRLPFDKQHPLDALFKETIFLIIRSVLLNKQIPVKILLHSSINQIQENWLAK EINNYCDVPLKFVNHIQEVPDLVITDKNNPLFHASKTFYWHPVPYLDEYYNLKQVVRKIY FAKLRGENSLEGIGC >gi|307679281|gb|GL456446.1| GENE 23 17546 - 23644 7175 2032 aa, chain + ## HITS:1 COG:L148778 KEGG:ns NR:ns ## COG: L148778 COG4932 # Protein_GI_number: 15672133 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Lactococcus lactis # 15 2031 11 1982 1983 1150 37.0 0 MRKNGPMVNRWLYGLMCLLLVLNYGTPLMALAEDVNSDGQLTLGEVKQTSQQEMTLALQG KAQPVTQEVVVHYSANVSIKAAHWAAPNNTRKIQVDDQKKQIQIELNQQALADTLVLTLN PTATEDVTFSYGQQQRALTLKTGTDPTESTAITSSPAASANEGSTEEASANSSVPRSSEE TVASTTKAIESKTTESTTVKPRVAGPTDISDYFTGDETTIIDNFEDPIYLNPDGTPATPP YKEDVTIHWNFNWSIPEDVREQMKAGDYFEFQLPGNLKPNKPGSGDLVDAEGNVYGTYTI SEDGTVRFTFNERITSESDIHGDFSLDTHLNDSDGRGPGDWVIDIPTQEDLPPVVIPIVP DTEQQIDKQGHFDRTPNPSAITWTVDINQAMKDQTNPTVTETWPTGNTFKSVKVYELVMN LDGTIKEVGRELSPDEYTVDKNGNVTIKGDTNKAYRLEYQTTIDEAVIPDGGGDVPFKNH ATLTSDNNPNGLDAEATVTATYGKMLDKRNIDYDEANQEFTWEINYNYGEQTIPKDQAVI TDTMGDNLTFEPDSLHLYSVTFDDKGNEVVGAELVEGKDYKVVINGDGSFAIDFLHDVTG AVKIDYKTKVDGIVEGDVAVNNRVDVGTGQHSEGDGTASQQNIIKNTGAVDYQNSTIGWT LAVNQNNYLMENAVITDTYEPVPGLTMVPNSLVVKDTTTGAQLTLGKDFMVEITRNADGE TGFKVSFIGAYAKTSDAFHITYTTFFDVTELDANNPALDHYRNTAAIDWTDEAGNNHHSE DSKPFKPLPAFDLNAQKSGVYNAVTKEITWTIAVNLSNNRLVDAFLTDPILTNQTYLAGS LKVYEGNTKPDGSVEKVKPTQPLTDITMEEPSEKNQNTWRVDFPNDSRTYVIEFKTSVDE KVIEGSASYDNTASYTNQGSSRDVTGKVSIQHGGESVKKGGEYHKDDPDHVYWHVMINGA QSVLDDVVITDTLSPNQVLDPESLVIYGTNVTEDGTITPDKSVILEEGKDYTLEVTTDNE TGQQKIVVKMAHIEAPYYMEYRSLVTSSAAGSTDTVSNQVSITGNGSEVVHGDDNGDVVV DIDHSGGHATGTKGKIQLKKTAMDETTILAGAHFQIWDQAKTQVLREGTVDATGVITFGG LPQGQYILVETKAPEGYTVSDELAKGRVITIDEETSAEGAQPTIIKNDVNKVILEKTDEK GKKLVNARFKLEHAVTTPFTHWEELPLAPDRTNANGQLEVDSLKPGLYQFTEIEAPTGYL LDTTPKRFIVTQNTSGQIRDVHVKMLNYQGSAELIKKDQAGNPLAGAEFSVLDTTGQAVR EHLVSDANGKVTVTDLAPGKYQFVETKAPAGYLLNTESSAFTIAASDRGKPATVIATANF VNYQGAAKLIKKDVNGHLLSGATFKVLDAKGQTIQTGLTTNSQGKIIAEHLAPGKYRFVE TKAPTGYLLNTAPVPFEIAEKNAGKPAVVVASDNFVNYKGAFQIVKTNSADQPLAGAVFE LYDHNKQSLGITATSGKDGKIIFRDLAPGTYYYKEIKAPKLLDGADYIIYPELVKVEIRG DFKGDPEIFQLGAFANFKGRAVFKKIDANANPLPGTIFKLYRIENGEKIFEREVTAEKDG SLAMDDLGAGSYELDEMDATDGYIVNKQPIYFVVKKNSNDKQPLDELEFVNYQAEVTGRK VNEQGQTLAGAVFAIYNVDNQNQPQGSPITFLNRAGEKVSEITTDKTGEIYAKGLNEGHY VLVETKAPTGYLLDTTPHPFDVTAQLGKEQPIALGDLINYQGTAQLTKENETGEALAGAV FKVIDETGQTVAGQANLMSDKQGKVIAKNLAPGTYRFVETQAPTGYLLNETPSASFTIAK DNQGKPATVVLKAPFINYQGAAKLVKIDQQKNALAGAEFKVTDAETGQTVARSLRSDNQG LVQVNHLQPGKYTFVETKAPDGYQLSKQAVTFTIAATAKDKPELVDAGTFVNEKQTVSKK TKPNQPTTKQAARDTGWLGLPKTNTQVNYFFVFIGLMLVGLASWLFYKKSKK >gi|307679281|gb|GL456446.1| GENE 24 23921 - 24832 997 303 aa, chain + ## HITS:1 COG:SPy1158 KEGG:ns NR:ns ## COG: SPy1158 COG1597 # Protein_GI_number: 15675134 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Streptococcus pyogenes M1 GAS # 1 295 1 300 303 188 32.0 9e-48 MKKMMVLYNETSGSSESKEIAERFKKAAEARGEAVILQPSNPDIDPEEMRKNAKENQVGV LVVIGGDGTIHHAVQNFKDTIRDYQIGIIPGGTVNNFARVLSIPLKEEDAFETILAGQTT PVDFGMVNQDVMISTLTIGLLADTAANVTQQEKQKYGPLAFTKQFFRLLMKKKKYKLKID GDERRWHGKDQLLTMTMTNSAGGFTNFDANATPDDGEVHIIILPKLVFYKFVYYLPKIIR GQLNEIPGVVYFSGSQFKISGEKDKKVQTRTDGDPTDDLPIKVTVEAGGLNVFVPETSTS TKE >gi|307679281|gb|GL456446.1| GENE 25 24914 - 26419 1441 501 aa, chain + ## HITS:1 COG:no KEGG:EF0091 NR:ns ## KEGG: EF0091 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 501 1 501 501 928 98.0 0 MKWDEYVDIFDTDVVSKIIILRNLPINEGWIDINELAEELQLNKKSVKKYVELLKDDITY YAVDNDASLAFEKGHGYRLNLASSQAFQKLYTAIFRDSLTYQVMEDLFWGRFNGIVPATA KYHTSDATIRRLLKGFTEILAPLGLVINKSTWKIEGNEAYLRHFAYTIFMDLIRDTWPFD YIQETEVAQTVQKMMAFFNVEVAETVTRRVKYMVAISKVRSAQGAEYRPSAEQETYLEGN KHYQAFIEEMTATTLFLNKNDLTFVYFFLLANDQFYQDEATAQAILAHFDETEAPVYMLT HLVQHFLLEEIHMTPQLEKIRPQIFYYLFATHLFAELYYVQNVKMYNVFWNKVKEKYPVL LEELSQGLNQLYEQTGNELFTNKEFLALRYSSVLALSNDLIHREQKIVLGLKSGLPVLEE ERVKLSIENNFRRFYALEVLRYSEASKEEWQNIDLLLVTSLTDVETGHPEIFLLSSELTF EQYNRLNQKIVKINEKRTTSL >gi|307679281|gb|GL456446.1| GENE 26 26755 - 26994 336 79 aa, chain + ## HITS:1 COG:no KEGG:EF0092 NR:ns ## KEGG: EF0092 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 79 1 79 79 114 97.0 1e-24 MKKRMEQIEEILSCEENSAGVRLKELVEALELEVTNQNLLKVTSILHMNPKFKKIYAYED SRVITLYQLLQNKPLEVTE >gi|307679281|gb|GL456446.1| GENE 27 27009 - 29951 1833 980 aa, chain + ## HITS:1 COG:no KEGG:EF0093 NR:ns ## KEGG: EF0093 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 736 1 736 1055 1295 98.0 0 MKKTILILLFGLLTVVGLPMVTEAAEPVDATDATIFGAQAMVPNSTEDQTDKLQTLLSQT AKEGRALFLPQGSYALSKDIAISSNYQLIGDTTGATILHNATGAPIQLTDTTYGTKTNVR LQNIAFDGINVTLKLTNQLTLANNIFYNPLKGFVVNLNADIGVKISGNIFMRDTAHMQPK IDFNRAIYIGGYSTPSRFQYMSDVDIVDNLFGLKVTELDAIKSTSRSDLAATITRLQTAI EAGAISVPNEQNYLSTGVNSFNMLKDVTVQHNFFYSPYDNEDLNGLVGDHAIYFRGAQNI TVVGNHLRGLQNGPAGGFKFKSGRNITIMNNYLRNTGLIMYGTPEIGLAETQAEGAISEL SNWLVANNIFDWKYWNNQYAIGMEYNRHTGNNNVFNGVFINNQFVNYHNIPQNRRRELLI ASGGGFRPETSFVKDNTRDDGLKNGQLLVENWTEADYRLMPATWESLISPTLYEQYKNTP IPVRNTLATPVATTIVQGQSIDPQQLVANTNDADEAVPTAKIVNPEVLNEIGQQKVTVQL TYETGSLVTVNVPVTVEAPAKKLDLSQLQTVYASIGEANQYTVYSWQLFTAIGPKTIVPS YYQQATQLLAEGQVSGDKTQEQVDQLTSNLQSAMKVLVKKADITLKRTEAENELASVHKL DESVYTKDSWQAMQEALIDTTTGEGSSKQLQQLLAWSDEELLEPTLGGFKTPADAQKRIN QLTQTIKTALLLLVEKSTETTSNTSESSTSSTTSETSNTSESSTPSMTSESSSTSESSTS STTSESSSTSESSTPSTTSETSNTSESSTPSTTSETSSTSESSTSSTTSETSNTNESNTP STTSKTSSTSESSASSTTSATNSTSESSTPSPVNESSQNKGQNSVIYAVESNQDPNDAQS NSKPSAKASQTKESVAENQATKQIQTNQESSGTVKKADNTTKIAKKKFPKTGEQSSTVVS FLGLSFLSLAIATYCFKVKR >gi|307679281|gb|GL456446.1| GENE 28 30128 - 30889 920 253 aa, chain + ## HITS:1 COG:L195318 KEGG:ns NR:ns ## COG: L195318 COG2116 # Protein_GI_number: 15672950 # Func_class: P Inorganic ion transport and metabolism # Function: Formate/nitrite family of transporters # Organism: Lactococcus lactis # 1 253 1 253 264 317 65.0 1e-86 MYTPDEILSISIENGQKKIQKPLVAKLILGFIGGAMISLGYLAYVRVSASIPADLASVQA LVGAAVFPIGLIVILMAGGELITGNMMAVSTAWFAKKVSFRELLVNWVTITLANMVGALF VAYFFGHYLGLTSSGAYLNQVLSLAEHKVAATWLQAIISGIGCNWFVGLALWLCYGAKDA AGKLLGIWFPVMIFVAIGFQHSVANAFIIPAAIFEGGVQWGDFFRNFIFVYLGNIIGGAI FVSGFYYLSYRKH >gi|307679281|gb|GL456446.1| GENE 29 31045 - 31830 695 261 aa, chain + ## HITS:1 COG:no KEGG:EF0095 NR:ns ## KEGG: EF0095 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 261 1 261 261 392 99.0 1e-108 MKKIALFSMLTFSVLSLSLAGCGNKKTASTNDSKPKQETKKATQKSSSQQEMKSSHSSVT GQNSNVTGENPSENATQPSAGTDETNEVPQNQAPDTNITITNVVFNPERNEINGTTLPNA TITATVVGDASAQAGVFYADANGNFTVISPRAGATTQLIATVDQRNSAPVQIDIPSSGQE AALSFSNITIDPKQGTISGKTAPNATILVSRADDARVILASFTADAQGNFTASNLVPGTK NRLDVTLNGEIGAPYLFDLPN >gi|307679281|gb|GL456446.1| GENE 30 31890 - 32570 656 226 aa, chain - ## HITS:1 COG:VC0355 KEGG:ns NR:ns ## COG: VC0355 COG2964 # Protein_GI_number: 15640382 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Vibrio cholerae # 7 225 23 237 240 172 38.0 6e-43 MESYLRLSEVDKQILHSHALMLDGLGNFFGSTHEVILHSLENLESSAIKVINGHFSNRKE GAPITDMALKMLSQVESEHDYAVKPYYNKNQKGVILKSSTIPVIGENDRIIGLICINMHL EMPLIDYLQDLLPSGQQNDMSQELKNSEHFSDNIDELITTSLTKVKQAVESDPNVSHLNQ NKEIVIRLYDQGIFNLKDSVIKIADRLGISKNTIYLHIRNHKKEEA >gi|307679281|gb|GL456446.1| GENE 31 32827 - 33933 1399 368 aa, chain + ## HITS:1 COG:SA2320 KEGG:ns NR:ns ## COG: SA2320 COG1299 # Protein_GI_number: 15928111 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Staphylococcus aureus N315 # 1 333 1 333 347 274 49.0 2e-73 MKTLSGILMLVLVLCGMSLFSFKAPRGKKSLSALSGAACATFLPEAFLRYAVGGVFHLDY VSQIGETMGSLGGLAAGALVPLAFGISPVFSIILGLSLIKVSLLPAFITAYLLSFVVEQM QKRIPEGIDLLVVILVIPVATSLVAGFIQPVVLGVLEVIGGTILSAVDGNPYVMGAILGA IIPIVGMTPLSSMVLTALIGLTGVPMAVGALTCYGSSIVNAALFKKLKLGTASTPLAVAI EPLTQVDIISSNPIPIYATNLFSGMVSGIVVTFFGLKVPVTGMATPWAGLLVTLGNNAIQ TTLLAVAIITVVSLMFGFLGALVFKRYRIEAVDNTPEFEGTTEVTSEKEKEAVKTKGGVT YEHSYGHQ >gi|307679281|gb|GL456446.1| GENE 32 33908 - 34615 885 235 aa, chain + ## HITS:1 COG:BH2497 KEGG:ns NR:ns ## COG: BH2497 COG1760 # Protein_GI_number: 15615060 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Bacillus halodurans # 17 212 1 195 220 164 44.0 1e-40 MNTAMAINKPKKVNKVMNYKSCFDIIGPIMIGPSSSHTAGALAIGLAARKLFGGTPEKIV IKYYESFADTHKGHGTDFAIIGGILGLAADDANVTQSIELAEEQGIEIQFLEMSEESPVK HANTACVTLSDATHEIHLTGISVGGGTIEVKYIELDGFNVQLHGPLPILLVINQEEQAMQ AFKDTLQKNNIQVNAVSRYVEGDQILFIFDLDSAPISSVKEQLFSLDDTSKIILL >gi|307679281|gb|GL456446.1| GENE 33 34630 - 35523 1137 297 aa, chain + ## HITS:1 COG:SA2318 KEGG:ns NR:ns ## COG: SA2318 COG1760 # Protein_GI_number: 15928109 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Staphylococcus aureus N315 # 1 289 1 289 299 304 62.0 1e-82 MYLSIEEFIDKAEKTGKKISDLMIEQEMERSQKSYEEIWTQMGQNLDVMDAAVKRSQEGA GVFSPTGLTGGDAARLKKYRAAGKTLSGDLMMSAVQAALGTNEVNAAMGVVCATPTAGAS GTLPGVLTAIKNTLNLTRDQQIRFLFTSSLFGMVTANNAMIAGAVGGCQAEVGSASAMAA AAAVEAAGGTPRQSSEAFAMALGNLLGLVCDPVAGLVEIPCVKRNTVGAGNALIAADMAL AGIVNKIPADEVVEAMNKVGRQLPRELRETGLGGLAGTATGQRMKNEIFEKVKFTIV >gi|307679281|gb|GL456446.1| GENE 34 35550 - 36821 1405 423 aa, chain + ## HITS:1 COG:SPy1742 KEGG:ns NR:ns ## COG: SPy1742 COG0172 # Protein_GI_number: 15675591 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 422 1 422 425 608 70.0 1e-174 MLDMKKIRQNVEVVQKKLKTRGVDEEVLLRFLALDEERRALLVKVEELKKHRNQVSGEIA QLKRAQKDASQQLLNMQEVSEQIKVLDQEVVHLQEQCTAIAERLPNLPHESVPVGADEAA NVEVRRWSTPKTFSFEPKPHWEIGEALGILDFERGAKVSGSRFLYYKGLGARLERAVYNF MLDQHVNEHGYTEVIPPYLVNSKAMFGTGQFPKFKEDVFQVAESDLTLIPTAEVPLTNYY NNEILDAQELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKFSDAEHSYEELE KMTNNAGDILEKLGLPYRVITLSTGDMGFSAAKTYDLEVWIPAQKTYREISSCSNCEDFQ ARRALIRYRDKTGHVQYAHTLNGSGLAVGRTVAAILENYQNEDGTVTIPEVLRPYMSGLT KID >gi|307679281|gb|GL456446.1| GENE 35 36858 - 37772 579 304 aa, chain - ## HITS:1 COG:lin1226 KEGG:ns NR:ns ## COG: lin1226 COG2267 # Protein_GI_number: 16800295 # Func_class: I Lipid transport and metabolism # Function: Lysophospholipase # Organism: Listeria innocua # 1 299 1 299 306 204 39.0 3e-52 MTEQFILTSNDQQTQLNVRHWPCPSPKAVVQLIHGMAEHIQRYDEFARFLNQLGFAVIGH DHLGHGESVQPSAPIYGFFGEQGPENVVTDIHQVKQWAVNRYPQLPYFMMGHSMGSFALR NYLQDYPVTVQGVIFMGTGTSPLPLTVALPFIKKMAEKQPKKPAPFIDKLAFGSFSKKFP EASSFNWLSKNQANVADYENDPLMGFVFTNNGFATLFSLVKRANQKNWYQAIPKELPILI ISGAEDPVGDFSKGPAKIQKQLKHAGFQHVTLRLFPTLRHEILLETEKATVFQEIGHWLT DLTN >gi|307679281|gb|GL456446.1| GENE 36 37938 - 38417 378 159 aa, chain - ## HITS:1 COG:lin1404 KEGG:ns NR:ns ## COG: lin1404 COG1438 # Protein_GI_number: 16800472 # Func_class: K Transcription # Function: Arginine repressor # Organism: Listeria innocua # 1 152 1 145 149 96 35.0 2e-20 MNRLKRQTMIKRLVTENEIHTQSELLALLEKENIHTTQATISRDIRELNLNKVDNGQGEA YYRILNNSALRPKYKTDEERLVDIIIETGVSLTQIEFTNLLTVLPGNGQAIGVLIDRIRI HNPHILGCIAGDDTILILSKNKEDALEVNNYFQQYLYHP >gi|307679281|gb|GL456446.1| GENE 37 38660 - 39148 508 162 aa, chain + ## HITS:1 COG:SPy2150 KEGG:ns NR:ns ## COG: SPy2150 COG1438 # Protein_GI_number: 15675892 # Func_class: K Transcription # Function: Arginine repressor # Organism: Streptococcus pyogenes M1 GAS # 1 146 1 139 145 78 34.0 7e-15 MNKQTRQSLIKKIIQTTVIHSQNELLKELKKREINVAQATISRDLWELKVVKALDESGEM RLTIFEQFTSLEERKKEQLIQAIREVVTKVERVAFLLVVHTLPDNATLFSAVLDEVSLCE KKCSVAGFDTVIIVSSSEEKAQELEQYFQQFIQPTPLSKSNA >gi|307679281|gb|GL456446.1| GENE 38 39445 - 40671 1429 408 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149020061|ref|ZP_01835035.1| 50S ribosomal protein L33 [Streptococcus pneumoniae SP23-BS72] # 2 408 3 409 409 555 67 1e-157 MSHPINVFSEIGKLKTVMLHRPGKELENLMPDYLERLLFDDIPFLEKAQAEHDAFAELLR SKDIEVVYLEDLAAEALINEEVRRQFIDQFLEEANIRSESAKEKVRELMLEIDDNEELIQ KAIAGIQKQELPKYEQEFLTDMVEADYPFIIDPMPNLYFTRDNFATMGHGISLNHMYSVT RQRETIFGQYIFDYHPRFAGKEVPRVYDRSESTRIEGGDELILSKEVVAIGISQRTDAAS IEKIARNIFEQKLGFKNILAFDIGEHRKFMHLDTVFTMIDYDKFTIHPEIEGGLVVYSIT EKADGDIQITKEKDTLDNILCKYLHLDNVQLIRCGAGNLTAAAREQWNDGSNTLAIAPGE VVVYDRNTITNKALEEAGVKLNYIPGSELVRGRGGPRCMSMPLYREDL >gi|307679281|gb|GL456446.1| GENE 39 40700 - 41719 1400 339 aa, chain + ## HITS:1 COG:SPy1544 KEGG:ns NR:ns ## COG: SPy1544 COG0078 # Protein_GI_number: 15675442 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 339 1 337 337 551 78.0 1e-157 MNSVFQGRSLLAEKDFTRAELEYLVDFSIHLKELKKKGIPHHYLEGKNIALLFEKTSTRT RSAFTTAAIDLGAHPEYLGANDIQLGKKESVEDTAIVLGSMFDGIEFRGFSQEVVEDLAK YSGVPVWNGLTDQWHPTQMIADFMTVKENFGRLEGITLVYVGDGRNNMANSLLVTGAILG VNVRICAPKELFPSDEVVNYAKEFAKESGAELMITDDVAKGVKGANVLYTDVWVSMGEED KFEERVNLLKPYQINMAMLEKTENMDGDLIVLHCLPAFHDTKTQYGEMVAEKFGITEMEI TDEVFRSKYGRQFEEAENRMHSIKAIMAATLGNLFIPRV >gi|307679281|gb|GL456446.1| GENE 40 41825 - 42757 1206 310 aa, chain + ## HITS:1 COG:SPy1541 KEGG:ns NR:ns ## COG: SPy1541 COG0549 # Protein_GI_number: 15675439 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Streptococcus pyogenes M1 GAS # 3 295 4 301 316 353 66.0 2e-97 MGKKMVVALGGNAILSNDASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNGPQVGNLLL QQQAADSEKNPAMPLDTCVAMTQGSIGYWLSNALNQELNKAGIKKQVATVLTQVVVDPAD EAFKNPTKPIGPFLTEAEAKEAMQAGAIFKEDAGRGWRKVVPSPKPIDIHEAETINTLIK NDIITISCGGGGIPVVGQELKGVEAVIDKDFASEKLAELVDADALVILTGVDYVCINYGK PDEKQLTNVTVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITSLENLGSMSG DEIVGTVVTK >gi|307679281|gb|GL456446.1| GENE 41 42782 - 43474 385 230 aa, chain + ## HITS:1 COG:SPy1548 KEGG:ns NR:ns ## COG: SPy1548 COG0664 # Protein_GI_number: 15675445 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Streptococcus pyogenes M1 GAS # 13 225 15 222 226 139 36.0 5e-33 MMIEKIITKNNQDFQYFSESELTELRNESFVRSYKKGQVLFYPGDPRNHLILLVSGVIKI EKNDRSGNFSYLHFMKKQALFPRIGLFQDEVHYDSAIAYTDIEVVFVPVKLFERFLQNNP QQLIHWIQEQSVLLKESMIKIQKGTTNDACERIVTSLAMLLNDLGERIDNRERVAITCPI TINDIARMSGTTRETASSVMKKLVQMNRISYSHKFLTFLDTPFFIDRLSN >gi|307679281|gb|GL456446.1| GENE 42 43522 - 44973 1416 483 aa, chain + ## HITS:1 COG:SPy1543 KEGG:ns NR:ns ## COG: SPy1543 COG1288 # Protein_GI_number: 15675441 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 1 462 1 478 497 285 37.0 1e-76 MAEKKKKNKKQLSSFSILFIILIVLGIVTVLLNGQPFTPREIDGKMVDHVVGAKLSDIIM APFNGFKDAIEINIFILVLGGFLNIVTQTGALEAGIQSVVKKLKGNELKIIPILMILFSI GGSTYGMAEETIPFYGLLSATMVAAGFDTFVAVGTVLLGAGSGVIGSTVNPFSTGVAMDA LRGIGIQPNTGIILIVGAILWAASTSYSIFIVMRYAKKVKADKGSTILSLQEQEDMEKTY GQAASKEMPFTNRHKKILMVFAFCFVIMIVSLIPWNDFGVTIFKGWTSVLTGNSFGDWYF GDLAMWFFLLGIIAALIGRFTEKETIEAFIDGAKDMLSVVLIIVVARGASVLMSKTYLDS FILDKAAGLLQGLSPVLFVIGAFVLYLGLSFLIPSTSGLAYVSIPVMGALAKNIGLSPEV MVMIFASGCGLINLITPTSGVVMGGLEISKVQYATWTKFMAKPMIVLGLINLIILIGAML LFS >gi|307679281|gb|GL456446.1| GENE 43 45064 - 45744 614 226 aa, chain - ## HITS:1 COG:BMEII1016 KEGG:ns NR:ns ## COG: BMEII1016 COG0693 # Protein_GI_number: 17989361 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Brucella melitensis # 2 221 3 224 235 181 43.0 7e-46 MKKILVVLTNVSRYHGTEEPTGLWLGEATEFVEEVTKAGFSVDYVSPQGGYVPLDPRSMK YVDSSIMAVYESADFQERALAHSLSLEEIDPDEYAAIYFTGGHGVMWDFPDNPQLQAITR SLYEQGKYLTSVCHGIAGLLNVKDASGNYLIADKTITGFTTAEEILAMKKAVVPFLNETI AKEHGATFAKKRPYKEFAYQDGRIITGQNPFSVRAVARLLIQQLSK >gi|307679281|gb|GL456446.1| GENE 44 45741 - 46076 422 111 aa, chain - ## HITS:1 COG:no KEGG:EF0110 NR:ns ## KEGG: EF0110 # Name: not_defined # Def: ArsR family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 111 1 111 111 187 100.0 1e-46 MKELEEIQTEFTALSDFLIALGDEKRQAIIIALLEDQACVGRRVTELTEATQLSRPAVSH HLKILKQAKLIDCRSEGTKNYYSLSHDTTKIEQLQQLLTHITSIMPGRKQA >gi|307679281|gb|GL456446.1| GENE 45 46256 - 47272 1052 338 aa, chain + ## HITS:1 COG:mll2116 KEGG:ns NR:ns ## COG: mll2116 COG0604 # Protein_GI_number: 13471972 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Mesorhizobium loti # 1 332 1 333 334 297 49.0 2e-80 MMKAALIHKYGQKELSIEEVPLPTIHDNDVLVKIIAASINPIDLKTKDGKVKMLLNYQMP LILGSDFAGIVVSVGKKVQNFRLGDAVYGRVPKNRVGTFAEYIAVDQAAVAMKPKNLTFE EAAAIPLVGLTSYQALHDIMNVQPGQKVLIQAGSGGIGTIAIQLAKLAGAYVATTTSSRN KEWVQALGADEVIDYRTQNFEEVLSDYDYVFDTMGGTILEKAFSVVKPQGKVVTLSGIPN ERFAKEYGLPLWKQWAFKIATRKIHRLEQDTDVSYHFLFMRPDGEQLALLTEFIEQGKLQ PIIDRVIPFSQIQEAVDYSLTGRAQGKIVVKIADVDHD >gi|307679281|gb|GL456446.1| GENE 46 47504 - 49990 444 828 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149001861|ref|ZP_01826834.1| 30S ribosomal protein S4 [Streptococcus pneumoniae SP14-BS69] # 620 824 1 209 539 175 40 9e-43 MVFKVGNNLSTRKGENRETIVSWLGLSLLVGLAFILFSLFHQPMVSQANEPTQEKHFMVY YRAWRDKTMQGVNTTLPDENWLTMHDIPYGIDIVNVFSYVPKGQEALAQPFYDTLKNEYA PALHARGVRLVRGIDYSELLKVPYAGTTPTEAEFDAYAKELLTKFVDDLGIDGLDIDMET RPSEKDIVLSNGVIRALSKYIGPKSGTDRPFLYDTNAEYLPPLQDVSDCFDFLAYQQYGS DDQRTQRALNNLSPVLNGERFVPGLTFPEEQDRNRWYDTKEPYMESNMYKVARYSYENNL GGMFLYALDRDGRTYNEDDLNQIKPSNLLWTKTAIAESKGVSLGEMKAAAQHYLKRISYA NADLEAQNKAAEAVTQATTLYDVNKAILGGDYGQGISNTYDAELEKGLLAIDLTTLYRAL DQAVTAIEKAENYTPETIQALQTTKETVATELAGKTYTAAQVTTWQTEVQTALDNLKEKQ TQPLKSVFSIDAGRKYFSVEQLEELVAKASQNGYTDVQLILGNDGLRFILDDMSVNVNGK KYNHNRVSKAIQRGNNAYYNDPNGNALTQKEMDRLLAFAKARNINIIPVINSPGHMDALL VAMEKLAIKNPAFDGSKRTVDLGNQKAVNFTKAIISKYVAYFSAHSEIFNFGGDEYANDV DTGGWAKLQSSGRYKDFVAYANDLAKIIKDAGMQPMSFNDGIYYNSDDSFGTFDPEIIIS YWTAGWSGYDVAKPEYFVQKGHKIFNTNDAWYWVAGNVDSGIYQYDDALANMSKKAFTDV PAGSPNLPIIGSIQCVWYDDPRRDYDFERIYTLMDTFSENYREYMVVK >gi|307679281|gb|GL456446.1| GENE 47 50419 - 51687 1345 422 aa, chain + ## HITS:1 COG:PH0854 KEGG:ns NR:ns ## COG: PH0854 COG0251 # Protein_GI_number: 14590714 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Pyrococcus horikoshii # 297 412 18 134 137 99 44.0 1e-20 MSNENIVLARNTEHAPKHPLAAQTVAFSHYNHLSAQLPIEPTSGQLVEGGIRAQATQCLK NIQAVVESINHVMSDIVRMTIFVKDMRDVAAVEEVYAAFFTHYYPAKTVIAVADLPLGAS VQMETLVSNGEGTIPNAPQAGDLIKLTNQTVQAPIDALASQTVAFSHYNNLSAQLPIDPQ TGRVVAGCVKTQTKQCLKNIKAILTSIDVPFDDIVKVNIYLKDLSKLEAVNQVYAAFFPD SGIARTVNYMPARTVIAVADLPMGAAVQVEAVVSHGDGTPPQAIEDRHGLIIEANNTDYA PKCPFSTQTVAFSHYNHLSAQLPLDPKTNALVAGGIKEQTTQCLENIKAIIESVDHSLAD LVKVNIFVKEIEELAAVDDVYQTYFPEGTPAKRVIGVTDLPKGAQIQIEAIAGNAEGTPP IG >gi|307679281|gb|GL456446.1| GENE 48 51737 - 52180 412 147 aa, chain - ## HITS:1 COG:lin1093 KEGG:ns NR:ns ## COG: lin1093 COG4815 # Protein_GI_number: 16800162 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 6 145 6 145 151 140 47.0 1e-33 MNSLPILEKAVGAITLLSEEKQNAEYESFLCQVNESQQLIRSRLAKKTPKKEGYFVAFWE KNQQNQNEAFDATEAPEMLAIVIADQEKQGLFLLPKECLIQQKILKTHQQKGKMASRFYP SWCQNLNQTAKKTQKWQLTYFTDLSKY >gi|307679281|gb|GL456446.1| GENE 49 52177 - 53589 1147 470 aa, chain - ## HITS:1 COG:BS_ydeF KEGG:ns NR:ns ## COG: BS_ydeF COG1167 # Protein_GI_number: 16077585 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Bacillus subtilis # 1 462 4 464 465 259 33.0 1e-68 MPINSYENYALSWRPVKERLTRPYYQSLVQQLEADILSGALQKNVKLPSQRELADYLDLN FTTIGQAYKHAMEKGLLYTNIGSGTFVSPNAFHSITISTNQVADHLIDLGLVSSFDMCNQ RILPFIESVSKNAALNSLLNYRDPLGTHFQRATAAEWLQTQGVRTNAEEVAIVSGVQNGL AVTLAAAFSPGQRIAVDRYTYSNFIELAQLYHLEIVPIGYDSEGMDPEHLLQECKKKKIH GIFLMPACNNPIGFQMSSARRMTLAEIIQQEHLWVIEDDIHSFLTTYAQQAVLPTFQELL PQQTIYLAGMTKFVCTGLRIAYLVFPPLLRQEIERAIFNINVKTSGFDAEIVTQVLRSPV AEELVIEKLALTKQANDLFDTIFGLARPSNPLPYYRTIPLSTEKTAPKIEQEFLQNGVRL FHSSRFTVQNQPDAFLRISLASNQLEVLAKGLTIIQELLPTLNEKKGHSL >gi|307679281|gb|GL456446.1| GENE 50 53687 - 54652 874 321 aa, chain + ## HITS:1 COG:MTH1495 KEGG:ns NR:ns ## COG: MTH1495 COG2423 # Protein_GI_number: 15679492 # Func_class: E Amino acid transport and metabolism # Function: Predicted ornithine cyclodeaminase, mu-crystallin homolog # Organism: Methanothermobacter thermautotrophicus # 55 320 65 330 339 159 33.0 8e-39 MDIISYERVIQQLSFSEAIQVMKRCFAELQKGKISQSERHVEVLPDGENQNLFALMPAYL GKNRFFGAKIITAFPENPQKNLASHLGQILLFDSSTGRPVAMMDANAITWLRTAAVSALA TDYLAAPKAKSIALIGAGQQASSHLAALQSVRAIEKVFIYDRTAERARKLIAKQQHNYPE CTFIGCSSVQEAVQEAEIICTLTSSHDAFLEEKDVLPNAHINAIGTFTPTSRELTSDLVK NSQVFVDEYAAALKESGDLLIPISEGAFSAEKIVGSLGELVTGKVKLKAEQKGRTIFDAV GLAVEDLCCAEYIYQKIQGEN >gi|307679281|gb|GL456446.1| GENE 51 54654 - 55442 851 262 aa, chain + ## HITS:1 COG:PA3578 KEGG:ns NR:ns ## COG: PA3578 COG0384 # Protein_GI_number: 15598774 # Func_class: R General function prediction only # Function: Predicted epimerase, PhzC/PhzF homolog # Organism: Pseudomonas aeruginosa # 1 260 1 260 261 236 49.0 3e-62 MSYPYYIVDAFAEEVFKGNPAAVYVLEKWLPEAVMQNIAIENNLSETAFTVKEGQSYALR WFTPEREIDLCGHATLATAFVLFNYYSVAEETLHFTSQSGPLAVTKKEEYYYLDFPYILP ERIPILPEYEAALGTKIYEAYLGRDLFFVLKDEETVAKITPDFSALKALDLGVGVIVTAS GDSVDFVSRTFFPKLRINEDPVCGSAHANLIPYWGKRLNQTTLSAYQVSPRGGFLTCEVK ENRVIIGGTAKLFAKGEAYLFV >gi|307679281|gb|GL456446.1| GENE 52 55491 - 56036 670 181 aa, chain - ## HITS:1 COG:no KEGG:EF0120 NR:ns ## KEGG: EF0120 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 4 181 1 178 178 343 99.0 1e-93 MEKMYRSPYEAYPYLSSKPEDLRCDFELMTDELASMTGLLRGYVQQLDVPEQPALTEELA KICELIYHVNPTTRTKLTVTEEEIAWLLERVNAMNELTYEENRPFVLPMGTICSSYAHIL RAKAKDIVRLLYRMDYGGKKIDPQLYDVVNLLSGYFFMLALYLNQLENGEEVPFVSRNYS I >gi|307679281|gb|GL456446.1| GENE 53 56203 - 56580 260 125 aa, chain - ## HITS:1 COG:no KEGG:EF0122 NR:ns ## KEGG: EF0122 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 125 1 125 125 105 99.0 8e-22 MKKKLIVLLLALFLTACSNNTGGKNSDASSTEVSTKQQTTQSSKKDSSNPDTTPTSTSSI TIETTENLKNRELNPTDDVSKTRRQLYEQGINSSTITDKELKEYISEAKEQKKDVIDYIK QKINQ >gi|307679281|gb|GL456446.1| GENE 54 56590 - 58458 1736 622 aa, chain - ## HITS:1 COG:CAC2367 KEGG:ns NR:ns ## COG: CAC2367 COG5492 # Protein_GI_number: 15895634 # Func_class: N Cell motility # Function: Bacterial surface proteins containing Ig-like domains # Organism: Clostridium acetobutylicum # 19 420 232 589 752 196 30.0 9e-50 MKKSVITSSMLAVLLLGFLVTPISAYALERSKGTTEETVASETSLTEQQMSSGVTEEMNP SFINSQEETETTSTSSTSDSTTEVSTSEVTTVNDTENSSDDTETTLETSQSNEDTPVAPA KAEEKVPDINYQTHIQDIGWQGVVKNGEISGTSRRSLRLEGIKMNISNSDLAGSVEYRTH VQEIGWQGYVKDNQLSGTSGKSLRLEAIQIRLTGEIANAYDVYYRVHIEDKGWLNWAKNS ESAGSQSAAKRLEAIQIKLVKKGEAAPEGNGKAFLIGNEAKRPDEIKPNVNYQTHVQEIG WQGFVKNGEIAGTSGKNLQLEAIKINLSDAALAGNIEYSTHIQNIGWQDYKANGALSGTT GKNLQLEAIKIKLAGDVSRYYDVYYRVHIQDKGWLNWAANGAPAGSQAASKHLEAIQIKV VRKGETAPKGSGKAFLVGDEARTPAEIANRLRAERLKKKPYYYSQRDPQWINTYIGNYTI GAAGCVPTSLSMILRGSYGYNVNPVSVATRMASYGGLNQRYFGASATDLVITAQSYGRSI KVINDVSTLNAYLSEGYPVILYQNVGIGHAIVVHEYKNGYTLTYDPYGRQFYSGWVSTQA LWNTPSNDPIDWTEGRPCFVIL >gi|307679281|gb|GL456446.1| GENE 55 59309 - 59623 408 104 aa, chain + ## HITS:1 COG:no KEGG:smi_1320 NR:ns ## KEGG: smi_1320 # Name: not_defined # Def: hypothetical protein # Organism: S.mitis_B6 # Pathway: not_defined # 1 104 1 104 104 199 97.0 2e-50 MELKYVIPNMEKTFGQLEYAGEGNIEQRRVNGRPTILSRSYNLYSTIQRADDIVVILPSE AGEKHFESDEKVRLINPRITAEGYKIGNRGFTNYIMHADDMVKA >gi|307679281|gb|GL456446.1| GENE 56 59644 - 60021 571 125 aa, chain + ## HITS:1 COG:no KEGG:smi_1321 NR:ns ## KEGG: smi_1321 # Name: not_defined # Def: hypothetical protein # Organism: S.mitis_B6 # Pathway: not_defined # 1 125 1 125 125 221 99.0 7e-57 MRLAEGIVIEKDQTFGTLKFSALRREVRIQNEDGSVSEEIKERTYDLKSKGQGRMIQVSI PASVPLKEFDYNAEVELINPVADTVATATFRGADVDWYVKADDLVLKGQTKPHQKYKKEA SESEK >gi|307679281|gb|GL456446.1| GENE 57 60031 - 60804 610 257 aa, chain + ## HITS:1 COG:no KEGG:smi_1322 NR:ns ## KEGG: smi_1322 # Name: not_defined # Def: hypothetical protein # Organism: S.mitis_B6 # Pathway: not_defined # 1 257 1 257 257 499 98.0 1e-140 MTNTPLILKEIPKDEAISFIRQYHYSKILPRLCKYFLGIFSEEKLLGVVELGWGTQPLQT IRKLFPDSSLQTTDYLEIGKMCFLPEMNQTNYFGSQALSALIKWLKEHTDCHFLYTLADG IEGKCGYVYQASNFFYCGYFKTSVYRDKQSWEKIHPRSARFLLEENARFEQVEKKHWLSQ AFCEYKGIEKINGRMFRYLYPLTKEAKKLLGHTLYRRHYYPKEKDLRFEKRIAYRKYEAI SQPTFDKQARIYNTQLF >gi|307679281|gb|GL456446.1| GENE 58 60826 - 62229 972 467 aa, chain + ## HITS:1 COG:BS_ydcQ KEGG:ns NR:ns ## COG: BS_ydcQ COG1674 # Protein_GI_number: 16077553 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Bacillus subtilis # 7 465 13 467 480 380 43.0 1e-105 MPLLHDRGKRIKANDKDLVYHFVLISLLIVFLVVLLPFHWRTLQSVNWQTVQLDTFFYQL HTPYFWSSILTAFFVCGLSSWLYYHYRIDSIKQLEHRQKLARMILENHWYEAEETQSEGF FKDLSSKKTKQRIRHFPKMYYRMKDGLIHIHVEITLGKYQDQLLHLENKLETGLYCELVE KTLKDSYVEYVLLYDTIGNRIGIEDVVAQDGRVKLMESVYWEFDSLPHMLIAGGTGSGKS YFILTLIESLLHTNAKLYILDPKNADLADLGAVIDNVYYRKDDMLACISQFYDDMIARSE TMKQHPNYKTGENYAYLGLPANFLIFDEYVAMMDMLGRDSAQVMNKLKQIVMLGRQAGFF LILACQRPDAKYFSDGIRDNFNFRVALGRMSEMGFGMMFGSDTQKQFFLKPIKGRGYVDT GKSVISEFYTPLVPKRYDFLGEIGKVIQKKQSEPVPHEVKGTGSDLL >gi|307679281|gb|GL456446.1| GENE 59 62411 - 63595 946 394 aa, chain + ## HITS:1 COG:BS_ydcR KEGG:ns NR:ns ## COG: BS_ydcR COG2946 # Protein_GI_number: 16077554 # Func_class: L Replication, recombination and repair # Function: Putative phage replication protein RstA # Organism: Bacillus subtilis # 64 393 25 351 352 258 42.0 1e-68 MENEKIWIKELKEKRLAYGVSQNKLAVASHITRPYLSDIETGKAVPTQQVKEDLLNALER FNPDNPLEMLFDYVRIRFPTNDVSQIIGEVLRLNMDYMLHEDFGYYSYPEHYRFGDIVVL VSHDVSKGVLLELKGKGCRQFENFLLAQHRSWYGFFQDCMEHKGIFKRLDLAINDKTGIL NIPELAKKCKQEECISVFRSFKNYRSGELVHRDEKPDMGNTLYIGSLKSEVYFCIYEKDY EQYVKNDIALEDAEVKNRFEIRLKNDRATQAMKDLLEHQNAEKTAFEIINRYIRFADKDE TKRRSDWQTNERWEWFIGKNRGALRLTIQPEPYSFERTLNWLHHQVAPTLKVASILDILN GTTIISTMIHEAKLTEKHEKLIEQQHLGMEDLIT >gi|307679281|gb|GL456446.1| GENE 60 63592 - 63864 199 90 aa, chain + ## HITS:1 COG:no KEGG:lmo1110 NR:ns ## KEGG: lmo1110 # Name: not_defined # Def: hypothetical protein # Organism: L.monocytogenes # Pathway: not_defined # 1 90 1 96 96 83 55.0 3e-15 MSLLTEELKKLGFQAYIQNTGKYTSLIIEGKRQAGDTIYTYDFYKVRFYKNYTSRITVYG EHLTPFQLLKRVKSYIYYREKYLKERRTIT >gi|307679281|gb|GL456446.1| GENE 61 63861 - 64082 358 73 aa, chain + ## HITS:1 COG:no KEGG:smi_1325 NR:ns ## KEGG: smi_1325 # Name: not_defined # Def: hypothetical protein # Organism: S.mitis_B6 # Pathway: not_defined # 1 73 1 73 73 101 100.0 1e-20 MNFGQNLYNWFLDNAQSLVLLAIVVIGLFLGFKREFSKLIGFLIIALIAVGLVFNAAGVK DVLLNLFNRIIGA >gi|307679281|gb|GL456446.1| GENE 62 64142 - 64903 501 253 aa, chain + ## HITS:1 COG:no KEGG:smi_1326 NR:ns ## KEGG: smi_1326 # Name: not_defined # Def: hypothetical protein # Organism: S.mitis_B6 # Pathway: not_defined # 1 253 7 259 259 464 97.0 1e-129 MFTNDQFKSLLIKTLERKSSSNYYEGGNEIVSKMKISEVTLDETNEFTYYKGYKRDWNTL CTYLKIRAPFDDLDFFESHKDLLTQTASSIYDKQGDNVLVDTILVPLPENYEVINFSQLK ISDVISQAIEDAESFMSNGEYQRAFDRVHTAFHGYLIEILKKYEITVPRDENLSKLYSRI QQLIEKEIQPTELADIVKTTIRSSNGMISSLNEARNRHSLAHPNTNIIGKREAKLIIGIS STVTDYISGYLDK >gi|307679281|gb|GL456446.1| GENE 63 64965 - 65465 661 166 aa, chain + ## HITS:1 COG:no KEGG:smi_1327 NR:ns ## KEGG: smi_1327 # Name: not_defined # Def: hypothetical protein # Organism: S.mitis_B6 # Pathway: not_defined # 1 164 1 164 166 288 95.0 8e-77 MELKVYVANLGRYNEGELVGSWFTPPIDEEEMAERIGLNENYEEYAIHDFELPFDVDEYT PISEINRLCEAIQEIEGTPIYNELKEIQGMWFSSLEELLENKENIHCYSECDSMEDVARY YVEETGQLGEVPSNLQNYIDYQALGRDMEIEGNYLITSHGVFEYSN >gi|307679281|gb|GL456446.1| GENE 64 65537 - 66562 490 341 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|314937367|ref|ZP_07844704.1| ## NR: gi|314937367|ref|ZP_07844704.1| hypothetical protein HMPREF9525_00050 [Enterococcus faecium TX0133a04] hypothetical protein HMPREF9527_02005 [Enterococcus faecium TX0133C] hypothetical protein HMPREF9523_01249 [Enterococcus faecium TX0133A] hypothetical protein HMPREF9526_00197 [Enterococcus faecium TX0133B] hypothetical protein HMPREF9524_00211 [Enterococcus faecium TX0133a01] hypothetical protein HMPREF9524_00211 [Enterococcus faecium TX0133a01] hypothetical protein HMPREF9526_00197 [Enterococcus faecium TX0133B] hypothetical protein HMPREF9523_01249 [Enterococcus faecium TX0133A] hypothetical protein HMPREF9527_02005 [Enterococcus faecium TX0133C] hypothetical protein HMPREF9525_00050 [Enterococcus faecium TX0133a04] # 1 341 11 351 351 643 99.0 0 MVIIDVYGKITKIKLSDKLKLYISNVSDDWKESIIEDMLQEIRQQKVDMADNLKRYGKTF QTEYSISYLKEIVHANVEDYTKYNLDSIESCLQCLVDNMICLFFDYEYQDMPFFDWTSNC FDGRFCEEDYAEKVMYFSNFVNHDIQNGIHMNCIYTSNMNPKEHTRILSNLSFRIDSNFK GCRTTDDYITELKKMGNRIDSILKSENDYYKLDYIMNGIYSDNSYNQNHYLKTFTLLELV LLKPNQNTNEIDKLLIPYLDKKYGEVSSEVAKLLRQMRNKIGHGDFKGFNEKAEKFAQKF MKHFHFDYTEYSRLNWVLLHTCCLLDDLLRITIFQQLKVTK >gi|307679281|gb|GL456446.1| GENE 65 66633 - 67028 298 131 aa, chain + ## HITS:1 COG:no KEGG:SAV0403 NR:ns ## KEGG: SAV0403 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_Mu50 # Pathway: not_defined # 1 128 15 142 145 230 94.0 1e-59 MKKIRSYTSIWSVEKVIYAINDLQLPFPITFTQMTWFIVSLFVVIIFGSLPPLSLIDGAL LKYLGIPVVLTWFMCQKTFDGKKPYGFLKSIITYALRPKITYAGKQIRLNKEKMNESITI VRSEQLNGTPH >gi|307679281|gb|GL456446.1| GENE 66 67012 - 69465 1952 817 aa, chain + ## HITS:1 COG:no KEGG:smi_1330 NR:ns ## KEGG: smi_1330 # Name: not_defined # Def: ATP/GTP-binding protein # Organism: S.mitis_B6 # Pathway: not_defined # 1 817 1 817 817 1548 97.0 0 MAHPIKYIEDNLVFNHDGEVFAYYELIPYNYSFLSSDEKVQVHDNFRQLIAQNRDGKIHA LQLATESSIRATQEQSKKEITGRLKEIAYEKIDEQTEALVSMIGDNQVDYRFFIGFKLLL NEQEVSVKNIGKDIQKAFAEFFHGVNHKLMGDFVSMPMSEIERFSKMEQLLESKLSRRFH IRPLGKDDFGYIIAHLYGQTGIPFDDYDYHLPKRYEDKKVLVKKYDIIKPTRCLIEEKQR YLRMEQEDTTTYVAYFTINSIVGELDFPNSEIFYYQQQQFTFPIDTSMNVEIVANKKALS TVRNKKKELKDLDSHAWESDNETSTNVVDALESVDELETNLDQTKESMYKLSYVVRVSAK NLDELKQRCDEVKDFYDDLSIKLVRPFGDMLGLHNEFIPSSKRYINDYIQYVTSDFLAGL GFGATQMLGENSGIYVGYNLDTGRNIYLQPSLASQGIKGSVTNALASAFIGSLGGGKSFS NNMLVYYSVLFGGQAIIVDPKAERGKWKETLPDIAHEINIVNLTSENDNKGLLDPYVILK LPKDSESLAIDILTFLTGISSRDSEKFPVLRKAIRSVTQSEQRGLLLVIDELRKEDTPIS NSIADHIESFVDYDFAHLLFSDGNVTQSISLEKQLNIIQVADLVLPDSNSSFEEYTTMEL LSVAMLIVISTFALDFIHSDRSIFKIVDLDEAWSFLQVAQGKALSMRLVRAGRAMNAGVY FVTQNADDLLDEKMKNNIGLKFAFRSTDLVEIKKTLEFFGVDKEDENNQKRLRELENGQC LVSDIYGRVGVMQFHPIFEELLHAFDTRPPVRNEVEE >gi|307679281|gb|GL456446.1| GENE 67 69462 - 71489 987 675 aa, chain + ## HITS:1 COG:no KEGG:SAV0401 NR:ns ## KEGG: SAV0401 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_Mu50 # Pathway: not_defined # 1 675 1 675 675 1281 99.0 0 MTQKQKKFLHYSWITLLCVGVILLLLGTLGNAVQATGLVDETIDTSNEYSKYGLNQYQLD YYVDNSWGWLPWNWSDGIGQSVMYGLYAITNFIWTISLYLSNATGYLVKEAYALDFISQT SQAIGENMQTIAGITPNGFSSSGFYVGFLLLFILIVGIYVAYTGLVKRETTKVIRAVLNF VVVFILSASFIAYAPDYIAKINDFSKDVSTASLNIGTKIVLPNTDSQGKDSVDMIRDSLF SVQVKQPWLLLQYGSTDVEALGEERVESLLSTSPDTNNGEDRENVVIEEIEDHDNTYLTL PKTISRLGTVFFLFVFNIGISIFVFLLTGIMIFSQVLFIIFAMFLPISFLLSMLPSFDGM GRHAITKLFNVIMTRAGITLIITVAFSISTMLYSLSASSPFFMIMFLQIVTFAGIYFKLG DLMSLFSLQSNDSQNMGRQVFRRPRQMMNRQTRRFQRSMSKIFRGKAGSTKQKTMTTKQN QTNKANHTRQNERTTPKKETALSNVKKQQGGIGQRLGEKTAHVLDTKNRLVNKRKQAKQQ IQATPTHVKYALHQGKENVTHNVTDFKQSMADTKAQRKQQRMNQQEQKRKNIAQKRLELD KAKEKRRKENPSSPVQNNQQHVRKRQQTVTPVLSQNTKRENHQRPLKKEQKQKTPPKQFN QRKLNKRTDKRGQQT >gi|307679281|gb|GL456446.1| GENE 68 71486 - 72508 1009 340 aa, chain + ## HITS:1 COG:BS_yddH_2 KEGG:ns NR:ns ## COG: BS_yddH_2 COG0791 # Protein_GI_number: 16077564 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Bacillus subtilis # 219 337 5 123 124 134 54.0 2e-31 MKLKITVICSVVFSLFFFLLLFLVIFFADDTDSGENNKDSSIPEGGVTVSPEVLAHRPLI EKYGKEYGIEDYVSYILAIMQVESGGTAEDVMQSSESLGLPPNSLSTEESIKQGVKYFSE LLTSAEQQGVDIDSVIQSYNYGGGFLNYVRSHGKKYTYELAEQFSKEKSGGQKADYPNPI AIPVNGGWRYNYGNQFYVQLVSQYLTDTSPTEFDDETVQVIMDEALKYEGFPYVFGGASP TTSFDCSGLIQWVYDKAGISLPRVAQDQYDATQEISMEEAQAGDLIFFHSTYNAGTYVTH VAIYLEGNRFYHAGDPIGYGDLSSRYWQDHLIGARRVIHN >gi|307679281|gb|GL456446.1| GENE 69 72525 - 73454 768 309 aa, chain + ## HITS:1 COG:no KEGG:SAV0399 NR:ns ## KEGG: SAV0399 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_Mu50 # Pathway: not_defined # 26 309 37 320 320 473 99.0 1e-132 MIIKIERKEKKEKPKKSKKPSKQRKVPMIKVGTHKKLTFVLWVLLIGSVGFGIYKNFTAI DTHTVRETEIIKQQIVDTNQVESFVKSFAKDYFSWQQSQEAIDKRNEKLTHYLTEELQVL NEEMIRKDIPTSSSVNDIQVWQVSQVNENTFEVLFSVEQVITEDKDKETISSSFHVVVHI DESDNMVIIKNPTMSKKPQKSDYQPKQLESDHTVDTETMDEIISFLETFFQLYPTATEKE LTYYVSNHVLPMINKEYVFEELVNPIFTRKDNQVIVNVAVKYLDQETKATQISQFELILE KQDNWKIVK >gi|307679281|gb|GL456446.1| GENE 70 73706 - 75625 966 639 aa, chain + ## HITS:1 COG:CAC1448 KEGG:ns NR:ns ## COG: CAC1448 COG0480 # Protein_GI_number: 15894727 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Clostridium acetobutylicum # 2 611 3 619 652 421 37.0 1e-117 MKIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGI TSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG IPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIE GNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFYS STHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEKEKIKVTEMYTSING ELCKIDRAYSGEIVILQNEFLKLNSVLGDTKLLPQRKKIENPHPLLQTTVEPSKPEQREM LLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKYHVEIELKEPTVIY MERPLKNAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEG IRYGCEQGLYGWNVTDCKICFKYGLYYSPVSTPADFRMLTPIVLEQAFRKAGTELLEPYL SFKVYAPQEYLSRAYNDAPKYCANIVNTQLKNNEVIIIGEIPARCIQDYRNDLTFFTNGL SVCLAELKGYQVTTGEPVCQTRRLNSRIDKVRYMFNKIT >gi|307679281|gb|GL456446.1| GENE 71 75969 - 76322 465 117 aa, chain - ## HITS:1 COG:no KEGG:smi_1336 NR:ns ## KEGG: smi_1336 # Name: not_defined # Def: transcriptional regulator, Tn916 # Organism: S.mitis_B6 # Pathway: not_defined # 1 117 1 117 117 216 100.0 2e-55 MRKKEDKYDFRAVGLAIKEARMKRGLTREQVGTMIEIDPRYLTNIENKGQHPSTQVLYDL VSLLHVSIDEFFLPTDNLIKSTRRLQVEKYMDSFTDKELSLMEALAKGINEARNIEG >gi|307679281|gb|GL456446.1| GENE 72 76554 - 76664 77 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRKIICHLVLLIKFLSKKLIHLYWIDMTINVVLQIT >gi|307679281|gb|GL456446.1| GENE 73 76853 - 77275 338 140 aa, chain + ## HITS:1 COG:no KEGG:SAV0395 NR:ns ## KEGG: SAV0395 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_Mu50 # Pathway: not_defined # 1 140 21 160 160 251 100.0 7e-66 MKPSSFQETIENQFDYICKQVIEDERKDYFKHLDRLSAKEVSFSDIDNYLVNSFSTVDTY VTDFQLFKLFGLRINVESDLLSEALRHLSEKKRNIILLHYFMDMSDVEIAELLNLNRSTV YRHRISGLAMIKEFMKECKE >gi|307679281|gb|GL456446.1| GENE 74 77272 - 77502 292 76 aa, chain + ## HITS:1 COG:no KEGG:smi_1339 NR:ns ## KEGG: smi_1339 # Name: pnpA # Def: polyribonucleotide nucleotidyltransferase (EC:2.7.7.8) # Organism: S.mitis_B6 # Pathway: not_defined # 1 76 1 76 76 142 100.0 6e-33 MKTAYPRVPFPLIVKATDGDVEAINQIVKHYRGYTSKRSLRRMTDEYGNSHMVIDETLRG RMETKLISKILSFEIK >gi|307679281|gb|GL456446.1| GENE 75 78000 - 78200 237 66 aa, chain + ## HITS:1 COG:no KEGG:SAV0393 NR:ns ## KEGG: SAV0393 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_Mu50 # Pathway: not_defined # 1 66 1 66 66 115 98.0 6e-25 MITVTKKDLVELGYGTSFSADIIKKAKELMITKGHTYYQSRKLDRVPREAVEEILGIRFS NENRSE >gi|307679281|gb|GL456446.1| GENE 76 78227 - 79420 887 397 aa, chain + ## HITS:1 COG:BS_ydcL KEGG:ns NR:ns ## COG: BS_ydcL COG0582 # Protein_GI_number: 16077547 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Bacillus subtilis # 6 363 3 365 368 165 31.0 1e-40 MVKDPIKKAKNGTYYFRANLGYDSKGKKIQKYRSGFTTKKEAREEYSKLLLMKPEELSEN KDKMTFNHYIFEIFLPWYKTQVKLRTYENRLPTIKKHFSYFDKMAVSDIEPIDVQNWQLK LSKKCKSSYVRAVQGLFSVAMDRAIVLGITTTNPSKIIGNVKKQKSKIEFWTKEEFEKVI SLIYKEDYYQHFLFISLWFLFMTGMRIGEATAIQWKDIDFDSGVLTINKTLYYKNQSDYR FVEPKTKASVRHIVLDECTLNYLSKWKKAQQNLIQTDFVMSYNGIPTQKHTLAHAIERYA KLAGIHRIRIHGLRHSHASLLISMGENPLIIKDRLGHEDIETTLGTYGHLYPNSNFEVAN KLNGAISFKEAKQNYDTSPKNQFTVDYLRNKEMKKVQ >gi|307679281|gb|GL456446.1| GENE 77 79488 - 81050 1882 520 aa, chain - ## HITS:1 COG:SP1445_2 KEGG:ns NR:ns ## COG: SP1445_2 COG0519 # Protein_GI_number: 15901295 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase, PP-ATPase domain/subunit # Organism: Streptococcus pneumoniae TIGR4 # 202 520 1 316 316 561 86.0 1e-160 MTNVADLTSVEKIIVLDFGSQFNQLITRRIREFGVFSELLSHRTTAEEIRKIAPKGIIFS GGPNSVYDKDAFSIDPEIYELGIPILGICYGMQLMTHNLGGKVEPAANREYGKAELEILG DATLFQGTPAKQTVWMSHGDLVTEIAPGFEKVGTSNDCPIASIEDANRKFYGVQFHPEVR HSEYGNDLLRHFAFDVCGCTGDWSMENFIDMEVAKIREQVDDKKVLLGLSGGVDSSVVGV LLQKAIGDQLTCIFVDHGLLRKGEAEQVMESLGGKFGLNIIKVDAKERFLSKLVGVSDPE QKRKIIGNEFVYVFDDEATKLAGEEGVSFLAQGTLYTDVIESGTETAQTIKSHHNVGGLP EDMQFELIEPLNTLFKDEVRALGTELGMPDAIVWRQPFPGPGLGIRVLGEITEDKLQIVR DSDAILREEIAAAGLDRDIWQYFTVLPGIRSVGVMGDGRTYDYTVGIRAVTSIDGMTADF ARIPWDVLQKISVRIVNEVAHVNRIVYDITSKPPATVEWE >gi|307679281|gb|GL456446.1| GENE 78 81362 - 82285 918 307 aa, chain - ## HITS:1 COG:L66222 KEGG:ns NR:ns ## COG: L66222 COG1072 # Protein_GI_number: 15673426 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate kinase # Organism: Lactococcus lactis # 1 307 1 306 306 347 56.0 1e-95 MDDKMNYYPISREEWHGFYHDGKAPLTEAELDNIKSVNDQISLKDVQEIYVPLTHLIHLY MKEFESLTLSKGLFLHEYVSVPPFIIGIAGSVAVGKSTTARLLQRILARTFKRRNVQLIT TDGFLYPNKVLEEQGIMDRKGFPESYDMEKLINFLNEVKSGKDEIKAPVYSHSVYDVIEG EYELIQQPDILIVEGINTLQLPANQQIYVSDFFDFSIFVDADPALIEKWYLERFGALLDT AFLDPNNYYYQYAIGKREDAFAMARNVWKTVNLPNLEEYILPTRGRADIILHKTENHLID QIYLRKY >gi|307679281|gb|GL456446.1| GENE 79 82440 - 83027 750 195 aa, chain + ## HITS:1 COG:L161059 KEGG:ns NR:ns ## COG: L161059 COG2755 # Protein_GI_number: 15673705 # Func_class: E Amino acid transport and metabolism # Function: Lysophospholipase L1 and related esterases # Organism: Lactococcus lactis # 3 191 8 189 191 103 40.0 2e-22 MRKIVLFGDSITAGYLDEAVSPVLVDLVKRDIVAMGLEEVAVINAGMPGDTTEDGLKRLN KEVLIEKPDEVVIFFGANDASLDRNITVATFRENLETMIHEIGSEKVILITPPYADSGRR PERPQTRIKELVKVAQEVGAAHNLPVIDLYKAMTVYPGTDEFLQADGLHFSQVGYELLGA LIVREIKGRLKPKQA >gi|307679281|gb|GL456446.1| GENE 80 83042 - 83638 740 198 aa, chain + ## HITS:1 COG:lin0284 KEGG:ns NR:ns ## COG: lin0284 COG2813 # Protein_GI_number: 16799361 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S RNA G1207 methylase RsmC # Organism: Listeria innocua # 3 195 4 200 201 220 56.0 1e-57 MANHYYTENPELAHDLESWSFPLRGRTFQFTTDSGVFSRGTVDYGSRVLIDAFEWENLPA GRLLDVGCGYGPIGLSLAAATGRLVEMVDVNQRAVGLAQMNAQRNQITTVDNVYETLNET TYAAIVSNPPIRAGKKVVHGILTGAFPLLKVGGTLTVVIQKKQGAPSAEKKMAEVFGNVE IVTKDKGYYILRSVKEAE >gi|307679281|gb|GL456446.1| GENE 81 83605 - 84684 900 359 aa, chain - ## HITS:1 COG:L87453 KEGG:ns NR:ns ## COG: L87453 COG1816 # Protein_GI_number: 15672269 # Func_class: F Nucleotide transport and metabolism # Function: Adenosine deaminase # Organism: Lactococcus lactis # 6 335 15 347 352 289 43.0 7e-78 MEESRVRQLPKIELHCHLDGSIRPTTLRTIAEKQNIPLPQDEQALKELVVAPEKCTDLND YLTRFDFVLTCLQTAEALQAAAYDVISQAAEDGVAYIEVRFAPSQHTEKGLRLPEIVTAV LTGLKQGEEDFGVKSNALLCGMRHDQQQAIEKIVHLAHDFRETGVVGFDLAGNEVDFPPY TFEDVLALANQLSIPLTLHAGECGCGKNVADAVTLGATRIGHGIALKDTPEYLALLKEKK VLLEMCPTSNFQTGTVKTLAEYPFQQFIEAGLAVCINTDNRTVSDTTLTKEFMKLATWYQ LSYDEMKQLTKNALAGAFLSPDEKKLLNQKIDQAYLFKKRPSTKVEVLFYSASLTLRKI >gi|307679281|gb|GL456446.1| GENE 82 84844 - 85851 998 335 aa, chain + ## HITS:1 COG:lin2102 KEGG:ns NR:ns ## COG: lin2102 COG1609 # Protein_GI_number: 16801168 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 335 1 333 336 321 47.0 1e-87 MKLTIKEIADMAGVSVTTVSQILNNKGSRFSEKTRNKVLAVVAENHYKPDYFASNVINRH SKTIGMIVPDVTDFFFSKVIEGVETYLNSLGYMILLCNSKHDSEQAMQYVSELIHRSVDG IIFATPNVLPENHILKDRREHPIPVILVDRGINPRDSGRLIVKEYEGAYQAVHHLIQQGH QHIGMLRESAGYYRLTERVTAYQHALQDNNLPFRPHYVCAGELNLHGGYAAAKEVLKNEE ITAIFCGNDEMAMGAYQAIEEAGKKIPDDISVVGFDGLEISEYLVPSLTTVYQPSFDIGY YAAKFLVEAIADPTGKVPNKVFDATFIARKSTKPI >gi|307679281|gb|GL456446.1| GENE 83 85992 - 87293 1750 433 aa, chain + ## HITS:1 COG:lin2101 KEGG:ns NR:ns ## COG: lin2101 COG0213 # Protein_GI_number: 16801167 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine phosphorylase # Organism: Listeria innocua # 1 433 1 433 433 541 69.0 1e-154 MRMVDIIEKKRDGHQLTSEEIQFIINGYTDGSIPDYQVSAFLMAVFYQDMTDEEITQMTL AMVHSGEIVDLSSIEGIKVDKHSTGGVGDTTTLILAPLVASVGVNVAKMSGRGLGYTGGT LDKLEAIPGFKVELTEERFIQLVNDTKVAVIGQSGDLAPADKKLYALRDVTATVDSIPLI ASSIMSKKIAAGADAIVLDVTTGEGAFMKDLASARRLAETMVRIGKLANRQTMAVISDMS QPLGEAIGNSLEIVEAIETLQGNGPEDLVEMCYVLGSQMVVLAKKAETLDEARALLEEAL TSGRALAKFKEMIENQGGDSSVVDQPEKLLTATYQFDLPAKETGVVQKIVANEIGVAAML LGAGRATKEDTIDFAVGLKLHKKVGSPVEKGESLLTIYANREDVTEVEQLLYKNIEIGPT GEEPILIHDIITE >gi|307679281|gb|GL456446.1| GENE 84 87321 - 87983 900 220 aa, chain + ## HITS:1 COG:L63310 KEGG:ns NR:ns ## COG: L63310 COG0274 # Protein_GI_number: 15673422 # Func_class: F Nucleotide transport and metabolism # Function: Deoxyribose-phosphate aldolase # Organism: Lactococcus lactis # 1 216 1 215 220 282 68.0 4e-76 MELNRMIDHTILKPEATEAAVQKIIDEAKEYNFFSVCINPCWVAFASEQLADTDVAVCTV IGFPLGANTPEVKAYEAADAIKNGANEVDMVINIGALKSQQYDYVRQDIQGVVDAAKGKA LVKVIIETALLTDEEKVKACELAKEAGADFVKTSTGFSTGGAKVADIRLMRETVGPDMGV KASGGVHNAEEALAMIEAGATRIGASTGVAIVSGATGEGY >gi|307679281|gb|GL456446.1| GENE 85 88021 - 88416 380 131 aa, chain + ## HITS:1 COG:SP0844 KEGG:ns NR:ns ## COG: SP0844 COG0295 # Protein_GI_number: 15900731 # Func_class: F Nucleotide transport and metabolism # Function: Cytidine deaminase # Organism: Streptococcus pneumoniae TIGR4 # 6 128 5 127 129 171 67.0 4e-43 MTVKQEWLDCAVEALAHAYVPYSNFPVGACLVTTDGKMYQGVNIENASFGLTNCAERTAI FKAISEDERTFQHLVVAGNTEAPISPCGACRQVMAEFFDPQMPVTLVGKDGATKTMTVEA LLPYSFTDKDF >gi|307679281|gb|GL456446.1| GENE 86 88512 - 89585 1400 357 aa, chain + ## HITS:1 COG:SP0845 KEGG:ns NR:ns ## COG: SP0845 COG1744 # Protein_GI_number: 15900732 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Streptococcus pneumoniae TIGR4 # 23 356 22 350 350 291 53.0 1e-78 MKQAKFLGLGLVAVALTIGLAACGGNSKKNANTKGDPQHSVVMVTDTAGIDDKSFNQSAW EGMQEWGKEHKLPEGPQGYAYIQSNEASDYTSNIDQAISSQFKTIFGIGYLLKNAVVDAA DANPETNFVLIDDTVNGKNNVASATFRDNESAYLAGVAAANTTKTNKVGFIGGVEGPVIG RFQAGFEEGVADAGKKLGKDIQITSTYAGTFADASKGRALASSMYQAGADIIYHAAATTG QGIFQEAKALNETGSKDKVWVIGVDRDQNEDGKYTTKDGKDDNLTLASTIKGVNIAVKKI SDLALEDKFPGGEHLTYGLKDGGVDLTTEALSDQAKTAVKEAKEQIISGDVKVPDQP >gi|307679281|gb|GL456446.1| GENE 87 89639 - 90724 1432 361 aa, chain + ## HITS:1 COG:SP0845 KEGG:ns NR:ns ## COG: SP0845 COG1744 # Protein_GI_number: 15900732 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Streptococcus pneumoniae TIGR4 # 39 359 35 350 350 297 58.0 3e-80 MKKAKLFGFSLIALGLSVSLAACGGGKGKTAESGGGKGDAAHSAVIITDTGGVDDKSFNQ SSWEGLQAWGKEHDLPEGSKGYAYIQSNDAADYTTNIDQAVSSKFNTIFGIGYLLKDAIS SAADANPDTNFVLIDDQIDGKKNVVSATFRDNEAAYLAGVAAANETKTNKVGFVGGEEGV VIDRFQAGFEKGVADAAKELGKEITVDTKYAASFADPAKGKALAAAMYQNGVDIIFHASG ATGQGVFQEAKDLNESGSGDKVWVIGVDRDQDADGKYKTKDGKEDNFTLTSTLKGVGTAV QDIANRALEDKFPGGEHLVYGLKDGGVDLTDGYLNDKTKEAVKTAKDKVISGDVKVPEKP E >gi|307679281|gb|GL456446.1| GENE 88 90930 - 92498 1999 522 aa, chain + ## HITS:1 COG:SP0846 KEGG:ns NR:ns ## COG: SP0846 COG3845 # Protein_GI_number: 15900733 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport systems, ATPase components # Organism: Streptococcus pneumoniae TIGR4 # 5 512 4 511 511 673 71.0 0 MSQEENVIEMRKITKEFGTFKANDQIDLQVKPGEIHALLGENGAGKSTLMNILSGLLEPT SGEIYMNGEKVNITSPTAANRLGIGMVHQHFMLVEAFTVTENIILGSEPTHGGILDRKKA KKEIEEVSKQYGLDVNPNAYIRDISVGMQQRVEILKTLYRGANVLIFDEPTAVLTPQEID ELMIILKELTDEGKSIILITHKLDEIKKVADRCTVIRRGQSIGTVNVKDVSSQQLADMMV GRSVSFKTEKKPAQPKETILSIKDLVVKESRGLDAVKNLSLDVRAGEVVGIAGIDGNGQT ELIQALAGLTKVENGSIHLNEKEITNRKPREITEMGVAHVPEDRHKYGLVLEMTLAENIG LQTYYQKPYSSTGILNYRMINKHARELIEEYDVRTPNELVPARALSGGNQQKAIIAREVD RDPDLLIVSQPTRGLDVGAIEYIHRRLIEQRDKNKAVLLVSFELDEILNVSDRIAVIHAG EIVGIVDPKETTENELGLLMAGYSLEEARAELSKVEAGETVE >gi|307679281|gb|GL456446.1| GENE 89 92491 - 93624 1169 377 aa, chain + ## HITS:1 COG:SP0847 KEGG:ns NR:ns ## COG: SP0847 COG4603 # Protein_GI_number: 15900734 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 5 349 2 345 352 342 58.0 9e-94 MNNRSEKIRNILVPVLSVIMGFLLGAIIMVIFGYDPVAGYQAMFETAFQGKKSIGEIFVT AAPLIFTALGFSVANSAGFFNIGLSGQALCGWVASIWVALSMPDAPRMIALPVAIIVGAV AGALAAAIPGFLRAYFGTSEVIVTIMLNYILLYTGNHIANNVMKPSIMANKGITKMIGAN ASLRSPFLTSISDGSRLNIGIFLAFIFLILVWFLMKKTTLGFEIRSVGLNPFASEYAGMS SKRTIILSMMISGTLAGLGGAVQGLGTFQNFFIQNTSLSIGFDGMAVSLLGAGSSIGILL SALLFGMLKLGGQGMPLIAGVPTELVDVVIAAIIFFVGISYLIRFLLAKASGSKKEVAIV ETIEAAPDKNNQEGGDI >gi|307679281|gb|GL456446.1| GENE 90 93624 - 94577 1179 317 aa, chain + ## HITS:1 COG:SPy1225 KEGG:ns NR:ns ## COG: SPy1225 COG1079 # Protein_GI_number: 15675189 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 1 317 1 318 318 395 68.0 1e-110 MDLATISSIITQTLVYATPLILTALGGTFSERSGVVNVGLEGIMVMGAFSSVVFNLTFAD TFGAATPWIACLVGGVVGIVFSLLHAVATINLRADHIISGTVINLMAPALGVFLVKVIYQ KGQTDMITQSFGYFSFPGLSKIPVIGELFFAKTSLPAFVAILIAILAWFVIYKTRFGLRL RSVGEHPQAADTLGINVYLMRYSGVLLSGFLGGMGGAVFAQSIAGRFGITTIAGQGFISM AAMIFGKWNPLGAMGAALFFGFAQNLSIAGENLPIISEIPKVYLQAAPYVLTILVLVVFF GKSSGPKANGKNYVKTK >gi|307679281|gb|GL456446.1| GENE 91 94845 - 95438 412 197 aa, chain + ## HITS:1 COG:L85237 KEGG:ns NR:ns ## COG: L85237 COG3548 # Protein_GI_number: 15672844 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Lactococcus lactis # 1 190 1 185 188 87 32.0 2e-17 MNKTRVEAFSDAVIAIIMTIMILEIKTPQVGVLAGLIENIPYFLSFIVSFIFICIAWYNH HYIMSVTHWFSKKAFWANNFWLFSMAFIPVATAWVSEFWWMRAPVYFYLVVYTVWDFAYF LLTRIIYEDNVVKDPQGAAKLRKSKSYSKATKIIHLCLFAIGYIGIYFYPPIGIGVILSE AVIWYLNVPKEGDRLEC >gi|307679281|gb|GL456446.1| GENE 92 95740 - 96906 1509 388 aa, chain + ## HITS:1 COG:SA0134 KEGG:ns NR:ns ## COG: SA0134 COG1015 # Protein_GI_number: 15925843 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphopentomutase # Organism: Staphylococcus aureus N315 # 2 388 5 392 392 545 69.0 1e-155 MFKRVHLIVLDSVGIGEAPDAEKFGDVGSDTLGHIAKEAGLTIPHLEKLGLGTIAPLTGV KAVADHDGYATKLEEISVGKDTMTGHWEIMGLNIKKPFRVFPNGFPEELLKQIEDFSGRK VVCNKPYSGTAVIDDYGEHQMKTGDLIVYTSADPVLQIAAHEDIIPLEELYKICQYVRDI TKDEPYMIGRIIARPYVGEPGNFTRTSNRHDYALDPFGHTVLDSLKENGNDVIAVGKIND IFNGQGITEAIRTKSNMDGVDQLLTVMNKDFTGLSFTNLVDFDALYGHRRDVKGYAKAIE DFDGRLPEIMAAMAEDDLLLITADHGNDPTFPGTDHTREYVPLLAYSKKMTKQGSLPQGF YSDISATIAENFEVPATENGQSFLNQLQ >gi|307679281|gb|GL456446.1| GENE 93 96923 - 97741 1175 272 aa, chain + ## HITS:1 COG:SPy0892 KEGG:ns NR:ns ## COG: SPy0892 COG0005 # Protein_GI_number: 15674917 # Func_class: F Nucleotide transport and metabolism # Function: Purine nucleoside phosphorylase # Organism: Streptococcus pyogenes M1 GAS # 3 272 2 269 269 341 64.0 7e-94 MTTLTNHLNETTEFLKEKGVQQADFGLILGSGLGELANEITDAIAIPFSEIPHFSVSTVV GHAGQLVYGTLSGKKVLAMQGRFHYYEGHSMQTVTYPVRVMAALGIHSMIVTNAAGGVNE TYTPGNLMLINDHINFTGDNPLIGENDEEIGPRFPDMSHAYTQEYREVAKKVAAEQNIDL KEGVYMGFSGPTYETPAEIRMSRTMGADAVGMSTVSEVIVAVHSGMKVLGISCITNLAAG MQSSLNHAEVVETTERVKGQFKELVKATLAAL >gi|307679281|gb|GL456446.1| GENE 94 97759 - 98466 906 235 aa, chain + ## HITS:1 COG:L156559 KEGG:ns NR:ns ## COG: L156559 COG0813 # Protein_GI_number: 15672913 # Func_class: F Nucleotide transport and metabolism # Function: Purine-nucleoside phosphorylase # Organism: Lactococcus lactis # 4 234 5 233 234 311 67.0 6e-85 MSVHIEAKPGEIADKILLPGDPLRAKYIAETFLENPVCYNQVRGMLGYTGTYKGQRVSVQ GTGMGMPSAGIYAHELINSYDVKKLIRVGTCGSISEKVNVRELVIAQAAATPSSAIRNDF PKYDFPQIASFDLLLKSYEIAKAKGFTTHVGNVLSDDVFYKDSLDDVFRLGRYGVLAIEM EAAMLYYLAAKFDVEALAIMTVSDSLVTGEETTAEERQTTFNEMIEVGLETAIAN >gi|307679281|gb|GL456446.1| GENE 95 98505 - 99443 1222 312 aa, chain - ## HITS:1 COG:lin2073 KEGG:ns NR:ns ## COG: lin2073 COG0614 # Protein_GI_number: 16801139 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Listeria innocua # 22 311 19 310 313 97 26.0 3e-20 MKLLKKTVLIGTTLLLGSFLLAACGNTNKEANNADKTHEVTDTLGNKVTVPAKPKRIIAS YLEDYLVALGEKPVAQWTVGQGSIQDYLAKELKDVPTISYDLPYEAVLKFEPDLLLISSS ALVEGGKYKEYSKIAPTYVVKNGENVTWRDQLEDIATVLDKKEQAKKVLEDYDTLTKGVQ EDLGKKDASKSAAVLWVTNNQVFMVSDNRSSGTVLYQDLGLQVPKLVEEISKNATADWNQ VSLEKLAELDADHIFLVNSDESAPLFQEAIWKNLPAVKNNQVHTYDKKSSWLYNGPIANT QIVEDVKKALLN >gi|307679281|gb|GL456446.1| GENE 96 99680 - 100480 259 266 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 4 227 2 226 245 104 30 3e-21 MNYLEAEDLTTGYGRQVISEALNCSFEAGTITSIIGPNGCGKSTLLKTLARILPAEKGKV FIKNQELQHFSSKEVAQELAILSQTPENTIDLSVFDLVSFGRYPYQSGWKSVTTEDQEYI QWALELTGLTELARESVAILSGGQRQRVWIAMALVQDTDILILDEPTTYLDPAHQLEILN VLKRINQEHQKTIVMTIHDINLASRFSDRVIAMKEGKIINEGTPQEVITVTGLADVFAIQ AEISYHSQTQRPLVLSYELMEMELDG >gi|307679281|gb|GL456446.1| GENE 97 100567 - 101487 769 306 aa, chain + ## HITS:1 COG:lin2072 KEGG:ns NR:ns ## COG: lin2072 COG0609 # Protein_GI_number: 16801138 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Listeria innocua # 3 301 38 336 341 259 46.0 3e-69 MFGATSVSIQTIIESFTHFDATNQAHQVIQTVRLPRILGAAFVGASLAVSGALAQGITQN PLADSGLLGINAGAGLGLALVFAFLPQASYWWLLVVSFLGAGVSVALIYYLSNHSIRGAS PMRLTLVGAGISALFLSFSQFLAIQFNLSQELTFWFLGGVSVISWAQLKIVVPIFLGAFA LAVLISPSVTILRFGDDATIGLGRNPQRIRLFASITILLLSGLSVALVGSVSFVGLVVPH VMRTVSGENYRRLIPFSALGGALLVLVADLIARMVNPPFETPFGIITALIGIPFFLYLFR KGGQLG >gi|307679281|gb|GL456446.1| GENE 98 101484 - 102488 1002 334 aa, chain + ## HITS:1 COG:SA0604 KEGG:ns NR:ns ## COG: SA0604 COG0609 # Protein_GI_number: 15926326 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Staphylococcus aureus N315 # 10 332 14 337 338 241 41.0 1e-63 MTQKKVSRWVAILIVGIILTACISLTQGELSVSVMDLKALLLGQGSQAKQLLVWDFRLPR IVLAVLAGAALGLSGAILQGITRNPLADTGILGINAGAGLAVILFISFVETTSITTFALP LVALVGGLLAAVGILVIAYHHRLGLTPVRMVLAGVILSTGISTLTLLITSKIDTEKYRFV TMWQAGSIWGSNWFFVGALLPWLVIGFFFAMKRHRLLDILQLGDETAISVGIAVKKERIV SLLLAVMLAASAISVTGGINFLGLLAPHIARKCGFTQQKQVLPLAALFGSLLLLVSDTIG RLLPGNGEMPAGIIVAIIGAPYFLYLLIKTSDSL >gi|307679281|gb|GL456446.1| GENE 99 102617 - 103804 1414 395 aa, chain + ## HITS:1 COG:CAC3299 KEGG:ns NR:ns ## COG: CAC3299 COG1979 # Protein_GI_number: 15896543 # Func_class: C Energy production and conversion # Function: Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family # Organism: Clostridium acetobutylicum # 1 386 1 386 389 434 55.0 1e-121 MENFNFYVPTDIRFGKDRLDELPAVLDQFGKNVLLVYGGGSIKRNGLYQQITDLAQKNGH TLIELSGVEPNPRIETVRKGIELCKENQVDVILAVGGGSTIDCSKAIAAGFYSEEDIWTV IAARKGYTGPALPIVTILTLAATGSEMNAGAVISNLETNQKLGFGGPNMIPKVSFLDPTN TFTVPQNQTAAGSADIFSHLIENYFSISTGTDVQDFVSEGLMRTVIKNCPIALENPEDYD ARANLMWASSLALNGLTGRGKQGVWSCHPMEHELSAFYDITHGIGLAILTPRWMNYVLSE QTVGKFAQFARNVWGIVEQEEEVAAKKGIQALYDYFVACGIPMTLPEVGIEADKFEEMAQ QAVDHSAIAEKAYVPLDAADIVAIYKDCLTESQFI >gi|307679281|gb|GL456446.1| GENE 100 103875 - 104561 932 228 aa, chain - ## HITS:1 COG:NMA1801 KEGG:ns NR:ns ## COG: NMA1801 COG0588 # Protein_GI_number: 15794692 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Neisseria meningitidis Z2491 # 3 228 2 227 227 334 73.0 8e-92 MPKLVFSRHGLSEWNALNQFTGWADVDLAPEGVEEAKEGGRKIKEAGIEFDVAYTSVLTR AIKTCNYLLEYSDQLWVPQIKSWRLNERHYGKLQGLNKKETAEKYGDEQVHIWRRSYDTL PPLMEATDEGSAANDRRYAMLDQRDIPGGENLKVTLERALPFWQDEIAPALKDNKTVLVA AHGNSLRALAKHIEGISDEDIMDLEIPTGKPLVYELNDDLTVKEKYYL >gi|307679281|gb|GL456446.1| GENE 101 104736 - 105311 531 191 aa, chain - ## HITS:1 COG:STM2772 KEGG:ns NR:ns ## COG: STM2772 COG1961 # Protein_GI_number: 16766084 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Salmonella typhimurium LT2 # 1 178 1 179 190 103 34.0 2e-22 MKRIGYARTTIIEDDLKNQLTTLQSFGCDDIFQETFDPQAEISVLDEVEKLLSAGDTLIV CKLHHLGKTTRQLTDFMKMLKEKQVDFVSISEGIDTHLPTGEAYFQLMESLSAMECALIK ERTLVGLHKARENGKVGGRPKIDGRTVRKIRALYYENKETIQFISNKCGVSVGTCYKYIN LPETDVERLYS >gi|307679281|gb|GL456446.1| GENE 102 105353 - 106033 927 226 aa, chain - ## HITS:1 COG:L0045 KEGG:ns NR:ns ## COG: L0045 COG0120 # Protein_GI_number: 15674215 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase # Organism: Lactococcus lactis # 2 222 3 223 224 263 62.0 2e-70 MNLKQMVGIEAAKYVEEGMIVGLGTGSTAKFMVDEIGRRVKEEGLSIVGVTTSKETEKQA LALGIPLKSIDEVPYVDLTIDGADEISADFQGIKGGGAALLFEKIVATYSKKCIWIVDKS KMVDDLGAFPLPVEVVPYGSRQLVHLFEEKGYHPTLRLNAAGETLITDGGHHIIDLHLEK ITDPEALGSYLDNLVGVVEHGLFLNMVSMVIVGYEDGPKTLHVPAR >gi|307679281|gb|GL456446.1| GENE 103 106378 - 106791 706 137 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227555846|ref|ZP_03985893.1| 30S ribosomal protein S12 [Enterococcus faecalis HH22] # 1 137 1 137 137 276 100 4e-73 MPTINQLVRKPRKSKVEKSDSPALNKGYNSFKKTQTNVNSPQKRGVCTRVGTMTPRKPNS ALRKYARVRLSNLIEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIVRGALDTAGV NDRKQSRSKYGTKRPKA >gi|307679281|gb|GL456446.1| GENE 104 106847 - 107317 806 156 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374845|ref|NP_813998.1| 30S ribosomal protein S7 [Enterococcus faecalis V583] # 1 156 1 156 156 315 100 1e-84 MPRKGPVAKRDVLPDPIYNSKLVTRLINRVMVDGKRGIAANIIYNSFDIIKESTGNDPLE VFEQAMKNVMPVLEVKARRVGGSNYQVPVEVRPERRTTLGLRWVVNYARLRGEHTMEERL AKEIMDAANNTGASVKKREDTHKMADANRAFAHYRW >gi|307679281|gb|GL456446.1| GENE 105 107401 - 109482 2457 693 aa, chain + ## HITS:1 COG:SPy0273 KEGG:ns NR:ns ## COG: SPy0273 COG0480 # Protein_GI_number: 15674452 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Streptococcus pyogenes M1 GAS # 1 691 1 691 692 1188 87.0 0 MAREFSLEKTRNIGIMAHVDAGKTTTTERILYYTGKIHKIGETHEGASQMDWMEQEQERG ITITSAATTAQWKGYRVNIIDTPGHVDFTIEVQRSLRVLDGAVTVLDSQSGVEPQTETVW RQATEYKVPRIVFCNKMDKIGADFFYSVESLHDRLQANAHPIQIPIGAEEDFTGIIDLIK MKAEIYTNDLGTDIQETDIPEDYLEKAQEWREKLVEAVAETDEDLMMKYLEGEEITEEEL VAGIRQATINVEFFPVLAGSAFKNKGVQLMLDAVLDYLPSPLDIDAIKGIDTKTDEETTR PADDEAPFASLAFKVMTDPFVGRLTFFRVYSGVLESGSYVLNASKGKKERIGRILQMHAN TRQEIDKVYSGDIAAAVGLKDTTTGDTLCALDAPVILESIEFPDPVIQVAVEPKSKADQD KMGVALQKLAEEDPSFRVETNVETGETVISGMGELHLDVLVDRMKREFKVEANVGAPQVS YRETFRAATKAEGKFVRQSGGKGQYGHVWVEFTPNEEGKGFEFENAIVGGVVPREYIPAV EKGLEDSMNNGVLAGYPLVDIKAKLYDGSYHDVDSNETAFRVAASMALKAAAKNANPVIL EPMMKVTITVPEDYLGDIMGHVTSRRGRVEGMEAHGNSQIVNAMVPLAEMFGYATTLRSA TQGRGTFMMVFDHYEDVPKSVQEEIIKKNGGNA >gi|307679281|gb|GL456446.1| GENE 106 109633 - 110820 1486 395 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 395 1 407 407 577 70 1e-163 MAKEKFDRSKSHVNIGTIGHVDHGKTTLTAAIATVLSKHGGGEAQSYDSIDNAPEEKERG ITINTSHIEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHI LLSRNVGVPYIVVFLNKMDMVDDEELLELVEMEVRDLLSEYDFPGDDVPVIAGSALKALE GDESYEEKILELMAAVDEYIPTPERDTDKPFMMPVEDVFSITGRGTVATGRVERGEVRVG DEVEIVGIKDETSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDIERGQVLAKPATI TPHTKFKAEVYVLSKEEGGRHTPFFTNYRPQFYFRTTDVTGVVELPEGTEMVMPGDNVAM DVELIHPIAIEDGTRFSIREGGRTVGSGVVTEIVK >gi|307679281|gb|GL456446.1| GENE 107 111001 - 111825 1027 274 aa, chain + ## HITS:1 COG:lin0667 KEGG:ns NR:ns ## COG: lin0667 COG0351 # Protein_GI_number: 16799742 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Listeria innocua # 1 269 3 271 271 291 54.0 1e-78 MEKVLTIAGSDSTGGAGIQADLKTFEEYGVFGFSSLTSIVTMDPTTGWSHEVTELPETLL EKQLISVFAGGPVAALKTGMMGNEQNIKMASKYIKQEKIQKVVIDPVIACKGTAQILQPK SVEGLKNDLLPLALVATPNLIEAGILAGLGEISSVAEMEEAAKRIVQMGAKHVVVKGGHR LAGEKALDLFYDGHTAHLLENELYPTDYNHGAGCTFSAAITAGLAKGYSVLEAVTLAKKF VAAAIKHGIQVNPYVGHVWHGAYIHAEQRMRKKA >gi|307679281|gb|GL456446.1| GENE 108 112097 - 113263 1111 388 aa, chain + ## HITS:1 COG:CAC0877 KEGG:ns NR:ns ## COG: CAC0877 COG2230 # Protein_GI_number: 15894164 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cyclopropane fatty acid synthase and related methyltransferases # Organism: Clostridium acetobutylicum # 7 386 8 386 391 402 52.0 1e-112 MLEKETYSQLFKWSFSKKTQVTYWDGTVKEYGQGSGDPVFKIVFNEKIPVKDLLNNASLT LGEAYMDRKIEIEGDIQALIYDVYNQKDSFLHNAKFIKWLPKESHSKKRSQEDIHSHYDL GNDFYKKWLDQTMTYSCAYFKTPEDTLEQAQVNKVHHILDKLFIKEGDTLLDIGCGWGTL ILTAVKEYGAKATGITLSEEQFHHIRHIIEKEGLQDRMTVKLMDYRDLKGESFDHITSVG MFEHVGAENLHEYFDVVQRNLAPKGTALIHGISRQQGGAKNAWINRYIFPGGYIPGVTEL VGHMTENDLQVIDLESLRRDYQLTLEHWTKNFHNIETEIVDEKGERFYRMWDLYLQACAA SFQASNIDVIQYLLVHPDNNDIPMRRIG >gi|307679281|gb|GL456446.1| GENE 109 113332 - 113466 48 44 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227515486|ref|ZP_03945535.1| ribosomal protein S10 [Lactobacillus fermentum ATCC 14931] # 1 40 14 54 208 23 39 5e-53 RMKRIEKQNKCFSKQEKILSKKRRKSLLTLSFHSIIKKVLFTGV >gi|307679281|gb|GL456446.1| GENE 110 113473 - 113544 84 23 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVDQRFDLPAVKREVATRSDALP >gi|307679281|gb|GL456446.1| GENE 111 113576 - 113920 576 114 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227519991|ref|ZP_03950040.1| 30S ribosomal protein S10 [Enterococcus faecalis TX0104] # 1 114 1 114 114 226 100 5e-58 MSTFKIGEGGNKMAKQKIRIRLKAYEHRILDQSADKIVETAKRTGADVSGPIPLPTERSL YTVIRATHKYKDSREQFEMRTHKRLIDIVNPTPKTVDALMKLDLPSGVNIEIKL >gi|307679281|gb|GL456446.1| GENE 112 113942 - 114571 1059 209 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374851|ref|NP_814004.1| 50S ribosomal protein L3 [Enterococcus faecalis V583] # 1 209 1 209 209 412 100 1e-114 MTKGILGKKVGMTQIFTESGELIPVTVVEATPNVVLQVKTVETDGYEAIQVGYQDKREVL SNKPAKGHVAKANTAPKRFIKEFKNVELGEYEVGKEIKVDVFQAGDVVDVTGTTKGKGFQ GAIKRHGQSRGPMSHGSRYHRRPGSMGPVAPNRVFKNKRLAGRMGGDRVTIQNLEVVKVD VERNVILIKGNIPGAKKSLITIKSAVKAK >gi|307679281|gb|GL456446.1| GENE 113 114597 - 115220 1033 207 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227519993|ref|ZP_03950042.1| 50S ribosomal protein L4 [Enterococcus faecalis TX0104] # 1 207 1 207 207 402 100 1e-111 MPNVALFKQDGTQNGEITLNEEIFGIEPNESVVYDAIIMQRASLRQGTHAVKNRSAVRGG GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSDKVAE NNLVAVEGLSFDAPKTKEFKQVLANLSIDTKVLVVLENGNDFAALSARNLPNVSVVTSDN VSVLDVVSANKVLATQTALTQIEEVLA >gi|307679281|gb|GL456446.1| GENE 114 115220 - 115510 471 96 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374853|ref|NP_814006.1| ribosomal protein L23 [Enterococcus faecalis V583] # 1 96 1 96 96 186 100 7e-46 MELLDVIKRPVITEKSMLAMDEKKYTFEVDTRANKTLVKQAVESAFDVKVANVNILNVRP KFKRMGKYAGYTKKRRKAIVTLTEDSKEIQLFEAAE >gi|307679281|gb|GL456446.1| GENE 115 115550 - 116380 1431 276 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374854|ref|NP_814007.1| 50S ribosomal protein L2 [Enterococcus faecalis V583] # 1 276 1 276 276 555 99 1e-157 MAIKKYKPTTNGRRNMTSSDFAEITTSTPEKSLLQPLKNNAGRNNNGRITVRHQGGGHKR QYRVIDFKRNKDNVAAVVKTIEYDPNRSANIALVHYEDGVKAYILAPKGLEVGMRLVSGP EADIKVGNALPLENIPVGTVIHNIEMKPGKGGQLIRSAGTSAQVLGKEGKYVLIRLNSGE VRMILATCRATIGSVGNEQHELINIGKAGRSRWMRKRPTVRGSVMNPNDHPHGGGEGKTP IGRKAPVSPWGQPAIGYKTRNKKAKSDKLIVRRRTK >gi|307679281|gb|GL456446.1| GENE 116 116423 - 116701 486 92 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374855|ref|NP_814008.1| 30S ribosomal protein S19 [Enterococcus faecalis V583] # 1 92 1 92 92 191 100 1e-47 MGRSLKKGPFVDDHLMKKVEAQQGAEKKKVIKTWSRRSTIFPSFVGFTIAVYDGRKHVPV YIQEDMVGHKLGEFAPTRTYRGHVADDKKTKR >gi|307679281|gb|GL456446.1| GENE 117 116717 - 117070 564 117 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227519997|ref|ZP_03950046.1| 50S ribosomal protein L22 [Enterococcus faecalis TX0104] # 1 117 1 117 117 221 100 1e-56 MQMSEQITSAKATAKTVRTSPRKARLVIDLIRGKSVADAISILKFTPNKSAGIIEKVLMS AVANAENNFDLDVESLVVSEAFVNEGPTMKRFRPRAKGSASPINKRTSHITVVVTEK >gi|307679281|gb|GL456446.1| GENE 118 117137 - 117793 1112 218 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374857|ref|NP_814010.1| 30S ribosomal protein S3 [Enterococcus faecalis V583] # 1 218 1 218 218 432 99 1e-120 MGQKVHPIGMRVGIIRDWDAKWYAEKEYAEFLHEDLRIRKFIATKLADAAVSTIEIERAA NRVNISIHTAKPGMVIGKGGSEVENLRKELNKLTGKRVHINIVEIKKPDLDAKLVGEGIA RQLENRVAFRRAQKQAIQRAMRAGAKGIKTQVSGRLNGADIARSEGYSEGTVPLHTLRAD IDYAWEEADTTYGKLGVKVWIYRGEILPTKKNTEKGGK >gi|307679281|gb|GL456446.1| GENE 119 117796 - 118230 753 144 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374858|ref|NP_814011.1| 50S ribosomal protein L16 [Enterococcus faecalis V583] # 1 144 1 144 144 294 100 1e-78 MLVPKRVKHRREFRGKMRGEAKGGKEVAFGEWGLQATESHWITNRQIEAARIAMTRYMKR GGKVWIKIFPHKSYTSKAIGVRMGKGKGAPEGWVSPVKRGKIMFEIAGVPEEVAREALRL ASHKLPVKTKIVKREEMGGESNEG >gi|307679281|gb|GL456446.1| GENE 120 118220 - 118408 296 62 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374859|ref|NP_814012.1| ribosomal protein L29 [Enterococcus faecalis V583] # 1 62 1 62 62 118 100 1e-25 MKVKEIRELTTAEMLDKEKQLKEELFNLRFQLATGQLENTARIKEVRQSIARIKTVLREQ AN >gi|307679281|gb|GL456446.1| GENE 121 118411 - 118698 476 95 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227520001|ref|ZP_03950050.1| 30S ribosomal protein S17 [Enterococcus faecalis TX0104] # 1 95 1 95 95 187 98 2e-46 MEGGQTRMTEERNQRKVYQGRVVSDKMDKTITVVVETKKNHPIYGKRMKYSKKYKAHDEN NTAKVGDIVKIMETRPLSATKRFRLLEVVEEAVII >gi|307679281|gb|GL456446.1| GENE 122 118756 - 119124 591 122 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374861|ref|NP_814014.1| ribosomal protein L14 [Enterococcus faecalis V583] # 1 122 1 122 122 232 99 8e-60 MIQQESRLRVADNSGAREILTIKVLGGSGRKTANIGDVIVATVKQATPGGVVKKGEVVKA VIVRTKSGARRADGSYIKFDENAAVIIRDDKSPRGTRIFGPVARELRENNFMKIVSLAPE VL >gi|307679281|gb|GL456446.1| GENE 123 119160 - 119471 517 103 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374862|ref|NP_814015.1| 50S ribosomal protein L24 [Enterococcus faecalis V583] # 1 103 1 103 103 203 100 3e-51 MFVKKGDKVKVITGKDKNKEGVVLAAFPKQDKVIVEGVNVVKKHQKPNQAAPQGGILEVE APIHVSNVMVIDPSNGEATKVAFKEVDGKKVRVSKKTGEVLDK >gi|307679281|gb|GL456446.1| GENE 124 119497 - 120036 896 179 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374863|ref|NP_814016.1| 50S ribosomal protein L5 [Enterococcus faecalis V583] # 1 179 1 179 179 349 100 4e-95 MNRLKEKYIKEVTPSLVEKFNYSSVMQTPKVDKIVINMGVGDAVSNAKNLDKAVEELALI TGQKPLITKAKKSIAGFRLREGMPIGAKVTLRGERMYEFLDKLVTVSLPRVRDFHGVSKK AFDGRGNYTLGIKEQLIFPEVDYDLVDKVRGMDIVIVTTANTDEESRELLAQLGMPFQK >gi|307679281|gb|GL456446.1| GENE 125 120055 - 120240 333 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374864|ref|NP_814017.1| 30S ribosomal protein S14 [Enterococcus faecalis V583] # 1 61 1 61 61 132 98 7e-30 MAKKSMIAKNKRPAKHSTQAYTRCERCGRPHSVYRKFHLCRICFRELAYKGQIPGVKKAS W >gi|307679281|gb|GL456446.1| GENE 126 120276 - 120674 660 132 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374865|ref|NP_814018.1| 30S ribosomal protein S8 [Enterococcus faecalis V583] # 1 132 1 132 132 258 100 8e-68 MVMTDPIADFLTRIRNANMVKHETLEVPASKIKRDIAEILKREGFIRDVEYIEDDKQGVI RVFLKYGKNEERVITNLKRISKPGLRAYVKADEVPKVLNGLGIAIISTSEGVITDKEARA KNIGGEVIAYVW >gi|307679281|gb|GL456446.1| GENE 127 120706 - 121242 909 178 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227520007|ref|ZP_03950056.1| 50S ribosomal protein L6 [Enterococcus faecalis TX0104] # 1 178 1 178 178 354 99 1e-96 MSRIGNKVVVLPAGVEIKQDGNNITVKGPKGELTREFSSDIKMNIEGNEVTFTRPNDSKE MKTIHGTTRANFNNMVVGVSEGFQKALELIGVGYRAQVQGNKLTLNVGYSHPVEMTAPEG VTFEVPANTQVIVKGINKEVVGELAANIRGVRPPEPYKGKGIRYVGEFVRRKEGKTGK >gi|307679281|gb|GL456446.1| GENE 128 121394 - 121759 599 121 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227520008|ref|ZP_03950057.1| 50S ribosomal protein L18 [Enterococcus faecalis TX0104] # 1 121 1 121 121 235 99 1e-60 MKIVITKPDKNKTRQKRHRRVRNKISGTAECPRLNIFRSNKNIYAQVIDDVAGVTLASAS ALDKEISGGTKTETAAAVGKLVAERAAEKGIKKVVFDRGGYLYHGRVQALAEAARENGLE F >gi|307679281|gb|GL456446.1| GENE 129 121780 - 122280 817 166 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374868|ref|NP_814021.1| ribosomal protein S5 [Enterococcus faecalis V583] # 1 166 1 166 166 319 100 5e-86 MVYIDPKHLELEDRVVAINRVTKVVKGGRRLRFAALVVVGDKNGHVGFGTGKAQEVPEAI RKAIEDAKKNLVEVPMVGSTIPHEVIGVFGGGRILMKPAVEGSGVAAGGPVRAVLELAGV ADITSKSLGSNTPINVVRATVEGLKQLKRAEEVAALRGKSVEEIIG >gi|307679281|gb|GL456446.1| GENE 130 122295 - 122474 286 59 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374869|ref|NP_814022.1| ribosomal protein L30 [Enterococcus faecalis V583] # 1 59 1 59 59 114 100 2e-24 MAELKITLKRSVIGRPQNQRATVKALGLGKVNSTVTKPANEAIKGMVNTISHLVDVEEV >gi|307679281|gb|GL456446.1| GENE 131 122522 - 122962 731 146 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374870|ref|NP_814023.1| 50S ribosomal protein L15 [Enterococcus faecalis V583] # 1 146 1 146 146 286 100 5e-76 MKLHELKPAEGSRQVRNRVGRGTSSGNGKTAGRGQKGQKARSGGGVRLGFEGGQTPLFRR LPKRGFTNINRKDYAVVNLDTLNRFEDGTEVTPVVLKEAGIVKNEKAGIKVLADGELTKK LTVKAAKFSKSAQEAIEAAGGSIEVI >gi|307679281|gb|GL456446.1| GENE 132 122963 - 124261 762 432 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 [alpha proteobacterium BAL199] # 10 432 19 439 447 298 38 1e-79 MFKLLKNAFKVKDIRSKILFTVLILFVFRLGAHITVPGVNAKGLSDLSSLPFLNMLNMVS GSAMQNFSIFSMGVSPYITASIIIQLLQMDIVPRFVEWSKQGEVGRKKLNQATRYLTIVL GVAQSMGITAGFNSLSQTGIVNNPTLGTFVMIAVILTAGTMFVTWMGEQITEKGIGNGVS MIIFAGIISRLPGAVKEIYEDYFVNIESSRIWQSVIFIAILVIAILVIVTVVTFFQQAER KIPIQYTKRVSGAPTSSYLPLKVNAAGVIPVIFASSLIATPNAILQAFSSKFAGENWYDI MTKIFSYNTVPGAIIYTVLIVAFTFFYAFVQVNPEKLAENLQKQGSYIPSVRPGKGTEEY VSGVLMRLSVVGSIFLGLVALLPIIAQMVWNLPQSIGLGGTSLLIVIGVALETTKQLEGL MMKRQYVGFINK >gi|307679281|gb|GL456446.1| GENE 133 124348 - 124998 834 216 aa, chain + ## HITS:1 COG:L140714 KEGG:ns NR:ns ## COG: L140714 COG0563 # Protein_GI_number: 15674059 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Lactococcus lactis # 1 213 1 214 215 300 68.0 9e-82 MNLILMGLPGAGKGTQAEKIIDTYGIPHISTGDMFRAAMKNETALGLEAKSYIDKGELVP DEVTNGIVKERLAEPDTDKGFLLDGFPRTLDQAKALDTMLKELNKKIDAVIDIHVEEDVL IERLAGRFICRTCGATYHKLFNPPKVEGTCDRCGGHEFYQREDDKPETVKNRLAVNIESS APILAFYKEQGLMHTIDGNREIDTVFSDVKKIIDEN >gi|307679281|gb|GL456446.1| GENE 134 125209 - 125427 311 72 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 [Streptococcus pneumoniae TIGR4] # 1 72 1 72 72 124 81 2e-27 MAKEDMIEVEGTVVETLPNAMFKVELENGHQVLATVSGKIRMHYIRILPGDKVTVELSPY DLTRGRITYRFK >gi|307679281|gb|GL456446.1| GENE 135 125460 - 125576 210 38 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374874|ref|NP_814027.1| 50S ribosomal protein L36 [Enterococcus faecalis V583] # 1 38 1 38 38 85 100 1e-15 MKVRPSVKPMCEHCKVIRRKGRVMVICPANPKHKQRQG >gi|307679281|gb|GL456446.1| GENE 136 125596 - 125961 606 121 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374875|ref|NP_814028.1| 30S ribosomal protein S13 [Enterococcus faecalis V583] # 1 121 1 121 121 238 100 2e-61 MARIAGVDIPRDKRVVVSLTYIYGIGNTTAKKVLANVGVSEDVRVRDLTNEQTDAIRAEI DKLKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPTRGQNTKNNARTRKGPTKTVAGKK K >gi|307679281|gb|GL456446.1| GENE 137 125989 - 126378 654 129 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374876|ref|NP_814029.1| 30S ribosomal protein S11 [Enterococcus faecalis V583] # 1 129 1 129 129 256 100 4e-67 MAAKKVSRKRRVKKNIESGVAHIHSTFNNTIVMITDTHGNALAWSSAGSLGFKGSKKSTP FAAQMAAEAATKVAMEHGLKTVDVTVKGPGSGREAAIRSLQATGLEVTAIRDVTPVPHNG CRPPKRRRV >gi|307679281|gb|GL456446.1| GENE 138 126459 - 127397 1219 312 aa, chain + ## HITS:1 COG:BS_rpoA KEGG:ns NR:ns ## COG: BS_rpoA COG0202 # Protein_GI_number: 16077211 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, alpha subunit/40 kD subunit # Organism: Bacillus subtilis # 1 312 1 314 314 431 74.0 1e-121 MIEFEKPRIEKIDENRDYGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAITNIQIDGVL HEFSTIPGVREDVTQIILNIKGLALKLYAEEEKTLEIDITGPATVTAGDIIVDSDVEILN KDLVICSVAEGATFHARLTVKPGRGYVQADENKKEDMPIGVLPVDSIYTPVRRVNYQVEN TRVGRRDDFDKLTMEIWTDGSIIPQEALSLAAKIMTEHLDIFVNLTDEAKNAEIMVEKEE TQKEKMLEMTIEELDLSVRSYNCLKRAGINTVQELTNKSEPEMIKVRNLGRKSLEEVKLK LHDLGLGLRKDD >gi|307679281|gb|GL456446.1| GENE 139 127471 - 127854 618 127 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374878|ref|NP_814031.1| 50S ribosomal protein L17 [Enterococcus faecalis V583] # 1 127 1 127 127 242 99 6e-63 MSYRKLGRTSSQRKAMLRDITTDLIINERIVTTEARAKEVRSTVEKMITLGKRGDLHARR QAATFVRNEVASVREEDESIVVESALQKLFNDLGPRFAERQGGYTRILKTEPRRGDAAPM VVIEFVK >gi|307679281|gb|GL456446.1| GENE 140 128129 - 129328 1392 399 aa, chain + ## HITS:1 COG:no KEGG:EF0235 NR:ns ## KEGG: EF0235 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 399 1 399 399 657 99.0 0 MSQMFAFSLLMVILYIGDVVSIKTKAWIPSVFVCGVLFILGYWTIFPQNIVEVAGIPTVV ATLLMYLLITNMGTLLSVKELFNQWKTIVIALSGILGIIALLLAVGTFIFDLKTVLVAIP PLVGGLVSSLVMSEAAQSAGLASLSVLAILIYVIQGFAGYPLTSIVLKKEGKRKLQEYRA GTWQPVHEQEGQETGAEPDVPKLFEKVPKRYHTDYSRILRLALVATLAYYVSVWTAPFVT ISPFVLCLCFGVIATSLGFLEKQPLQKANSFGFAILGLMLFVFDGLKQATPEMLMDLFLP MIGIIVIGVIGMYIFSAIVGRVLGVSKEMAFAVSLTALYGFPADYIITNEVIQSLTEDEQ EQAALTSHLMPPMLVAGFVTVTIVSVILAGIFSSILLSL >gi|307679281|gb|GL456446.1| GENE 141 129344 - 130519 1254 391 aa, chain + ## HITS:1 COG:lin0542 KEGG:ns NR:ns ## COG: lin0542 COG1473 # Protein_GI_number: 16799617 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Listeria innocua # 3 387 4 388 393 565 71.0 1e-161 MKKIKALVKQHAQEMIAFRRDLHQHPELQFEEFRTTEKVAAVLDQLGITYRKTEPTGLIA EIVGGKPGRVVALRADMDALPVQELNEDLAYKSLEAGKMHACGHDSHTAMLVTAAKVLKE IQEELQGTVRLIFQPSEENAQGAKAMVAQGAMTGVDDVFGLHIWSQMPVGTASCRVGSSF ASADIFSVDFKGRGGHGAMPNACIDAAVIASSFVMNLQTIVSRETDPLDPVVVTIGRMDV GTRFNVIAENARLEGTVRCFSVATRNRVEQALQRYAEQTAAIYGGTASLDYQYGTLPVIN DEQDALFAQTLIKENFGEAALRQEEPTTGGEDFSYYTEHASGCFALVGSGNPEKDTEWAH HHGRFNIDEDAMAMGAELYAQYAFEYLKTHF >gi|307679281|gb|GL456446.1| GENE 142 130721 - 131560 1079 279 aa, chain + ## HITS:1 COG:L75718 KEGG:ns NR:ns ## COG: L75718 COG1122 # Protein_GI_number: 15672259 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Lactococcus lactis # 1 272 1 272 277 317 58.0 2e-86 MQPIIELNNIQFNYQPEDASPALKDVSFSIQQGEWVAIIGHNGSGKSTLAKTINGLLLPA AGTIKVGGKELNEANVWDIRRMVGMVFQNPDNQFVGSTVEDDVAFGLENQGIPRDEMVER VHDALERVRMLDFAKREPARLSGGQKQRVAIAGVVALRPDIIILDEATSMLDPEGRAEVI ATIQKIKEESNLTVISITHDIDEAANANRILVMRQGQLTNEGTPEKIFSAGEALVEMGLD LPFPEKLKVALKERGVVVPTNYLTEEGMVDWLWTSVLNK >gi|307679281|gb|GL456446.1| GENE 143 131536 - 132405 440 289 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 5 278 132 396 398 174 38 3e-42 MDIRFKQVDFTYQPNTPFEQRALFDINLTIQDGSYTAIVGHTGSGKSTLLQHLNALVKPT KGQVTIGERVITPETDNKNLKPIRKKVGIVFQFPEAQLFEETVERDIAFGPKNFGVSDEE AKKLAKKMLDLVGLDEKYLQHSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKG RKEMMEMFSRLHKEHNMTIVLVTHLMDDVANYADHVIVLEKGQIVRAGAPQEVFQETQWL KEKQLGVPTAAEFAEKLVAKGFSFEQLPLTADQLADQLLKKMQEAGEAK >gi|307679281|gb|GL456446.1| GENE 144 132405 - 133199 738 264 aa, chain + ## HITS:1 COG:lin2783 KEGG:ns NR:ns ## COG: lin2783 COG0619 # Protein_GI_number: 16801844 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Listeria innocua # 1 249 2 250 266 318 63.0 6e-87 MNKLIFGRYIPGDSFIHRLDPRAKLLASFYFIGIIFLANNWQSYVLIAAFTAFAISLSKI SARFFIRGVRPLLWLILFTVALQTLFTQGGEVYFQWGIISITQFGVTNGLFIFCRFVLII FMSTLLTLTTAPLELSDAIEYLLRPLRVVKFPVHEVSLMLSIALRFVPTLMDETEKIMNA QRARGVDFGEGNLLQKMKAIVPLLIPLFVSSFNRAEDLATAMEARGYQGGEGRTKYRILH WHLRDTIVMFGFVLLTIGLFVLRT >gi|307679281|gb|GL456446.1| GENE 145 133218 - 133967 827 249 aa, chain + ## HITS:1 COG:SP1599 KEGG:ns NR:ns ## COG: SP1599 COG0101 # Protein_GI_number: 15901439 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Streptococcus pneumoniae TIGR4 # 1 248 1 248 249 320 63.0 2e-87 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEETLARMNNGHSVTVFGSGRTDAGVHAMG QVIHFDYPQERPLEKMRFALDTQTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIGKP RSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHVNE TGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPEGL YLAEVKYEN >gi|307679281|gb|GL456446.1| GENE 146 134018 - 134329 588 103 aa, chain - ## HITS:1 COG:L158972 KEGG:ns NR:ns ## COG: L158972 COG0393 # Protein_GI_number: 15672916 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 101 5 104 108 92 53.0 1e-19 MLVTTTERISGQEYEIIGEVFGLTTRSKNMFKDLGAGLKSVVGGEIKGYTDMQREARDQA IERLKAEASKLGADAVVMMRFDSGTIGTDMQSVVAYGTAVKYI >gi|307679281|gb|GL456446.1| GENE 147 134462 - 135817 1634 451 aa, chain - ## HITS:1 COG:SA0180 KEGG:ns NR:ns ## COG: SA0180 COG1114 # Protein_GI_number: 15925890 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Staphylococcus aureus N315 # 1 428 1 428 449 457 59.0 1e-128 MQKKLVWRDYLYVGSMLFGLFFGAGNLIFPVHMGQEAGASVFLANLGFLATGIGLPFLGV IAMGVSKSSGVFDLASRINRRYALIFTLLLYLTIGPFFALPRLATTSFEIGLAPFVPKDL QWLVLAGFSALFFLAVWLFSRKPSKILDYVGKFLNPLFLALLGILIVLAFVKPLGHVASA AVGENYISSPFFKGFTEGYNTLDALASLAFGIVVVSTLRNMGVEKPGDIAKGMIKSGAFS VVLMGVIYTLLAYMGTMSIGAFPISENGGIALAQIANYYLGLPGSILLAFIVVLACLKTG IGLSTAFSETFEEMFPKVSYQKFLAIVVILPAIFANVGLTNIIQFAVPVLMFLYPLAITL MLLVIISPIFKHRREVYQATTYITLIAAVLDALNSAPAFIKDTAFVTTLLEKAGQYLPLF TIGMGWVVPATVAFLISWVWVMISKKDPILD >gi|307679281|gb|GL456446.1| GENE 148 135908 - 136399 447 163 aa, chain - ## HITS:1 COG:lin2246 KEGG:ns NR:ns ## COG: lin2246 COG0454 # Protein_GI_number: 16801311 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Listeria innocua # 5 161 1 157 157 105 35.0 3e-23 MSTSLTIRLVAEADWPALHALDQIIWTKKNTPAEIQPLSLAAYQEKMKDETIFVAISGQQ LAGFIEVHPPTSLAAHQKQWLLSIGVSPDFQGQGIGGSLLSYVKDMAQISGIHKLSLRVM ATNQEAIRFYEKHGFVQEAHFKEEFYINGHYCDDYQYAYFIEK >gi|307679281|gb|GL456446.1| GENE 149 136588 - 137157 638 189 aa, chain + ## HITS:1 COG:FN0535 KEGG:ns NR:ns ## COG: FN0535 COG1611 # Protein_GI_number: 19703870 # Func_class: R General function prediction only # Function: Predicted Rossmann fold nucleotide-binding protein # Organism: Fusobacterium nucleatum # 2 187 4 189 192 204 51.0 6e-53 MKKMAVYCGASLGNEPIYQQAAVALAAWMKENHYDLVYGGGNVGLMGAVADTLLAEGGEV IGVMPTFLMEREIAHNGITKMHTVSDMHARKKKMIELADVYLALPGGPGTLEEISEVISW GRVGEHMNPCILYNVNGYYDLLAAFFDKMVETNFLTAADRAKIFISDSLEEIGAFIDSYE PPMIRQYKK >gi|307679281|gb|GL456446.1| GENE 150 137202 - 137942 279 246 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 226 1 223 305 112 30 1e-23 MSAIIEIEHLRKSFGENEVLKDINMNVNKGEVVTIIGSSGSGKSTLLRCINLLEKPTDGK IIYNGKNVLERGYSLPKYRTHLGMVFQSFNLFNNMNVLENCTSGQMTVLKRNKEEAKKIA LENLEKVGMARFIDAKPAQLSGGQKQRVAIARALSMDPDVLLFDEPTSALDPEMVGEVLK TMKNLAHTGLTMVIVTHEMEFARDVSDRVIFMDKGVIAEEGTAEDIFVHPKEARTKEFLH RILTKN >gi|307679281|gb|GL456446.1| GENE 151 137954 - 139537 1927 527 aa, chain - ## HITS:1 COG:SPy0277_2 KEGG:ns NR:ns ## COG: SPy0277_2 COG0765 # Protein_GI_number: 15674455 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 287 510 2 221 239 300 65.0 5e-81 MNKKVFSFSLLLVTLFSLLGMTTNASAEENGEFRVGMEAGYAPFNWSQKNDAHGAVPIQG NSYAGGYDVQISKKIADGLGRKLVIVQTKWDGLAPALQSGKIDAIIAGMSPTAERKKEIA FTNPYYESQFVVIVKKDGKYANAKNLKDLADAKITAQLNTFHYGLIDQIPNVNKQQAMDN FSAMRTALASGMIDGYVSERPEGITATSVNKELKMLEFPKENGFDASAEDSQVAVGMRKG DPDIEKVNKILAGISQDERTKIMDQAIKDQPAATDSDEQKTGLINDFKNIWNQYGDMFLR GAGLTLFIALIGTVVGTTLGLLIGVFRTIPDSENPVARFFQKLGNLILSIYIEVFRGTPM MVQAMVIFYGLALAFGISLDRTVAALFIVSVNTGAYMSEIVRGGIFAVDKGQFEAAQAIG MTHGQTMRKVVIPQVLRNILPATGNEFVINIKDTAVLSVIGVADLFFQGNAASGANFQFF QTFTIVGIMYLVMTFVITRILRVVERKMDGPSAYVKVEELTEEGKES >gi|307679281|gb|GL456446.1| GENE 152 140096 - 140392 394 98 aa, chain - ## HITS:1 COG:no KEGG:EF0248 NR:ns ## KEGG: EF0248 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 98 1 98 98 134 100.0 1e-30 MVAFIIYWAAIIACIAWGVLSIWFSVFYLSRKENGNLWAFAFFNVIAIIALAIVLLVYKT WDFGILTYSSLIYTILASLGVLTVLQAILGREPKAVKA >gi|307679281|gb|GL456446.1| GENE 153 140565 - 141278 803 237 aa, chain + ## HITS:1 COG:lin2882 KEGG:ns NR:ns ## COG: lin2882 COG0846 # Protein_GI_number: 16801942 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Listeria innocua # 17 233 12 229 229 268 55.0 6e-72 MQDITQAEAIHWLATQQKITFLTGAGISTASGVPDYRSLKGVYQGIQQPEYLLSRTCLKT EPEKFYQFVKTLYHPDAQPNIIHQKMAQLEQMKRGKIVSQNIDGLHRKAGSQEVVDFHGN LYECYCQTCGATVPWQDYLLSDRHADCHGQIRPAITLYEEGLSEEAIEKAIQAVASADLI VIVGTSFQVHPFCDLIHYKQPTATILAINQTPLFLQQPYYFLEAKAETIFAELTIKE >gi|307679281|gb|GL456446.1| GENE 154 141283 - 142128 968 281 aa, chain + ## HITS:1 COG:ylaD KEGG:ns NR:ns ## COG: ylaD COG0110 # Protein_GI_number: 16128443 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Escherichia coli K12 # 6 185 3 183 183 214 57.0 1e-55 MEEFKSEKEKMIAGALYFASDPELVADRKKAREQMALINQQPDTYIRRQLIEETFGKVGV GTYIEPMIQFDYGYNISVGKNFYANFNNVFLDVCPIEIGDNCMFGPNVQLYTAEHPLQAA KRNSGMESGKRIIIGNNVWIGGGAIDLPGVTLGDNVVVAAGAVVTKSFPENCVIAGNPAR IIKELTEDDAPTTSLEQQRAKINQIDKELVRLLEQRMDVVAEIAAVKKKAGHAVFDSERE QQVLETILNHVENAEYEETLSETFQGIMDASKRFQEKHLGE >gi|307679281|gb|GL456446.1| GENE 155 142139 - 142651 602 170 aa, chain + ## HITS:1 COG:SPy1427 KEGG:ns NR:ns ## COG: SPy1427 COG1827 # Protein_GI_number: 15675342 # Func_class: R General function prediction only # Function: Predicted small molecule binding protein (contains 3H domain) # Organism: Streptococcus pyogenes M1 GAS # 1 170 1 172 173 135 41.0 3e-32 MDGEIRRREIVKRLRETEKPISATRFAKAFDVSRQIIVGDVALLRATGVEIVATARGYML EQPLEGIERKIACQHTPEQTREELSVIVAKGGEVVDVSIAHPLYGELIGSLRIQSEKDID KFMDKYQKEHATLLSVLTGGVHLHTIRCADEETFQEIKEALRKKSILFEG Prediction of potential genes in microbial genomes Time: Tue Jul 5 20:13:46 2011 Seq name: gi|307679280|gb|GL456447.1| Enterococcus faecalis TX0411 genomic scaffold Scfld153, whole genome shotgun sequence Length of sequence - 11396 bp Number of predicted genes - 12, with homology - 11 Number of transcription units - 6, operones - 3 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 172 - 223 14.0 1 1 Op 1 . - CDS 228 - 3020 2819 ## COG1511 Predicted membrane protein 2 1 Op 2 . - CDS 3054 - 3284 397 ## EF0857 hypothetical protein 3 1 Op 3 . - CDS 3363 - 4115 869 ## COG2365 Protein tyrosine/serine phosphatase - Prom 4188 - 4247 7.8 + Prom 4127 - 4186 10.1 4 2 Tu 1 . + CDS 4289 - 5509 1006 ## EF0855 hypothetical protein - Term 5770 - 5817 -1.0 5 3 Tu 1 . - CDS 5821 - 6456 409 ## COG0681 Signal peptidase I - Prom 6554 - 6613 2.1 6 4 Op 1 . - CDS 6628 - 6930 150 ## EF0853 hypothetical protein 7 4 Op 2 . - CDS 6935 - 8230 1341 ## EF0852 hypothetical protein 8 4 Op 3 . - CDS 8255 - 8950 637 ## EF0851 hypothetical protein - Prom 9088 - 9147 10.4 - Term 9123 - 9182 12.4 9 5 Op 1 . - CDS 9269 - 9646 468 ## COG2337 Growth inhibitor 10 5 Op 2 5/0.000 - CDS 9662 - 10777 1159 ## COG0787 Alanine racemase 11 5 Op 3 . - CDS 10807 - 11160 398 ## COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) - Prom 11201 - 11260 9.4 12 6 Tu 1 . - CDS 11264 - 11386 59 ## Predicted protein(s) >gi|307679280|gb|GL456447.1| GENE 1 228 - 3020 2819 930 aa, chain - ## HITS:1 COG:L118462 KEGG:ns NR:ns ## COG: L118462 COG1511 # Protein_GI_number: 15673652 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 30 930 1 901 901 1284 71.0 0 MCRNIQAFVCYSLVFYAKVIQAQKKAGDFMKHIKNTWELFILDWKRIFKNPVATFLIVAL MIIPSLYAWFNIKALWDPYSNTGELPIAVYSDDQTATFQDKSVNIGDEVLKNLKKNKQLG WRFVDSKKELDKGVQSGKYFAGIYLPKDFSKDLLSFTSGDINKPKIEYSINEKINAIAPK ITSKGASSIQSQISEEFIKTASSTLIKTFNDIGYDIDKNMVSIQKVKSMILDTDANIGTI DTYAKQVTDLHGKMPELKEKLAKANDAMKYLPEVDALGEKIVELNGKMPSIKEQASVILT LQEKIPEIQNAGRQIAMIDEDFASVEQTMSEGIQEAKQGLEIIQQVQTALPDIRKLGDQA NDLGNVTLDGANKLQEALPSITNSVEVTLKSIQQVATTTTSVVATIRQALDDGQLTPEEK QHINEVVQDFTTNIQRQQQAINDIIAFMKQLQENAGNHDLDGAIAQLSHVNDLLTDFSNR LNQLNALVQAGDISGVQNYLNEIDEMATNISSIVGSVDVNGISNTVSTILNKLTSTIQNA QGQLNKAQQIDFEGLLSSTSQTVTNAISLLEKYQAEMPAIKQEIHDANTMLNGNMETIVN GINRGADLYKNDLPVIQDKVSKAAAFMQNDYPGIRKDLTNTLKTVNEKMPDVEAALDKAN ELIINDWPNIKTGLHKAANAIRKGEKEVDLGEILKLLKLDANKESDFFTQPVEVKEHAVY PIANNGSASTPFYTALCLWVGAVLFSSVATTDVYLEGKDKKRFSKREQFSARMFTFIVMG IGQALIVTLGNYFALGVDVRNPAYSVWFAVLIAITFMIMVYVLVALFGNVGKGIAIIILV LSISGGGGNYPIQVSGKFFQMINPFLPFTHAVNLLRESAGGIYWPNAWFAIWIMVGISVV FSIGGAILYPHLEHRSKKFAALAQKSHLFH >gi|307679280|gb|GL456447.1| GENE 2 3054 - 3284 397 76 aa, chain - ## HITS:1 COG:no KEGG:EF0857 NR:ns ## KEGG: EF0857 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 76 1 76 76 97 100.0 1e-19 MKEGQEQFLTFILDRTKEDKKEKMQALLAEMFERQQTGKLDKMYLMTKAPKLLAYLKPEA IDEVKQVVSEFSKNMK >gi|307679280|gb|GL456447.1| GENE 3 3363 - 4115 869 250 aa, chain - ## HITS:1 COG:lin1914 KEGG:ns NR:ns ## COG: lin1914 COG2365 # Protein_GI_number: 16800980 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 1 247 48 296 298 156 32.0 4e-38 MNSVVNFRDIGGFPTQQGTVVKTGHFFRSGELVNVAQEDQQMLVENYQIKRIYDFRSAAE TQERPDDSIQGTNYLHIDILADIQAQTASLEGMLKTVGSPDEAMDMAYKEMVLSNSGRKG YQTFFENFLSYPQEAILFHCFAGKDRTGIGAALILSALGVEHSYILEDYLKTNEQRKTAN EQIIAQYQANGTPPAEIQQLETLLYVKKEYLATALQAIEKEFGSVEGYLKEGLGLPLSAK KDMLSLYTKS >gi|307679280|gb|GL456447.1| GENE 4 4289 - 5509 1006 406 aa, chain + ## HITS:1 COG:no KEGG:EF0855 NR:ns ## KEGG: EF0855 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 406 1 406 492 702 99.0 0 MLKRDFLEKPYDYMNDILLFLYNNKGRATRNELVDFFNISLPTLNEYLSFLEQFLKEEQL QENLTLTVLGDTLYLNKAPTFSMKAMIMLFLDKSIKFHMVQQLFHKNEINGGYFQQNYAI SSTTYYRKIVELNDLLNEFNLRIKRGKLVGEEKQIRFFFFNFFWFIFEEKTDLEKELANQ YLGLIEILQEIPRITFDHTEILQIKLWMKISFRRMVLEPLPTISPHDVQLDRPLFEEINL SIHTYMKRIDRPYTINEAYMFYDFFCSMHNYSANAAFAFRLAKQQRIEKTYLNEMNRVIL TYLKARGYLSHYVLPIRLLYIENLLFQLHAQLYYFSGFILPFDYWTIQSLLKVVRHPFSE SEVYELVEIATTNFATKATASKYQNQFTEINYTLILNHIAELNEKK >gi|307679280|gb|GL456447.1| GENE 5 5821 - 6456 409 211 aa, chain - ## HITS:1 COG:lin1309 KEGG:ns NR:ns ## COG: lin1309 COG0681 # Protein_GI_number: 16800377 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Listeria innocua # 24 198 7 185 189 92 31.0 5e-19 MEYLLEQTDNHQSIRGPKRKMTAEEIKKKRQAYQKKQRVQVVKFFMPAILFAIFVFFFVL KTSSYPIAGQSMKPTLNAGERVLVQRTKQVARYDVIAFKAPLASKGTYVKRIIGVPGDRI WVNEGKLYLSEEPIASDNEALPENASRFDLSEEAAAQLRLFQKIPAGHYFVLGDNRTHSS DSRTFGFVEIQAIEGIVVFKMAPFKEIGKVK >gi|307679280|gb|GL456447.1| GENE 6 6628 - 6930 150 100 aa, chain - ## HITS:1 COG:no KEGG:EF0853 NR:ns ## KEGG: EF0853 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 100 9 108 108 156 100.0 3e-37 MVSKKLTGARKLHCLGVLFLAVTLSSSAERLQAAAVSKEEQSLRQPLIRKNIVTEKSEYL VEANQSIWELAQDAQKPLNQFMKENQLRSSYIKKGTQLVK >gi|307679280|gb|GL456447.1| GENE 7 6935 - 8230 1341 431 aa, chain - ## HITS:1 COG:no KEGG:EF0852 NR:ns ## KEGG: EF0852 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 431 1 431 431 400 98.0 1e-110 MTKRRLIKKIKDISDDTLEKEVFFQPGFEPEKIISGIKPEQQEKEMATLRERLAYYQKKE TAFKKLQEENEQLKNQQETEKQALEEKNQALLETLNQKEHEIFELEEQLETNSETTTEAT TLQTNLQNAEKQLTTVHNQMERLESELTQQVAELEKESAEQQQHIQILHNQLAEEKGKLE KKGDITGMEKQVETLTTELEESTTTQQALQEQIEKLTVQLQKVEAEKQTLQEAALQEVIV KQRMEELKNELQNSLQQKNEAEVKLGRLQGVNDKHLAEKQVYEGELAALRKEVEAKEDSL EQVQKELKTLQAVSKNIEPSSEQLTELLRAKQQINDLLMKNQQLQEEALKSQQEIGEVMV SAKKEANRIVNEAKVEAKHLINSAELEMLNIGNRAKSISNEVEASKVEVLEIYRELEERL TKLTRLEQDNY >gi|307679280|gb|GL456447.1| GENE 8 8255 - 8950 637 231 aa, chain - ## HITS:1 COG:no KEGG:EF0851 NR:ns ## KEGG: EF0851 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 231 1 231 231 379 99.0 1e-104 MMIVVLLMSSCLFLFVSYQLYLRLLVEKLDSEDRTLKRKINFYKYQKNSRLMIYLLFSVC LLSVLLLGIVYTYYQLNQRNIRMEQRIERLAQGQATQGDKIKKQAIKKTALNQFTWKQAV SAESAAVLTNYELQLAREWRPYLGETSITMIRSEKTQTLTLSVFSVGLSYHEFQTGQDNI VALIAALNSVKEITMIDFNFTYRDQEQTLVKSIDTYARETLETNLEPVVIS >gi|307679280|gb|GL456447.1| GENE 9 9269 - 9646 468 125 aa, chain - ## HITS:1 COG:BH0522 KEGG:ns NR:ns ## COG: BH0522 COG2337 # Protein_GI_number: 15613085 # Func_class: T Signal transduction mechanisms # Function: Growth inhibitor # Organism: Bacillus halodurans # 1 112 2 113 116 154 69.0 3e-38 MVKRGDIYFADLSPVVGSEQGGVRPVLVVQNNLGNHFSPTIIVAAITAKMAKPKLPTHIG INSDETGIEKDSVILLEQIRTIDKGRLKEKVCHLRLDIMEEVDRALGISVGLSSDSAPAK ANSAT >gi|307679280|gb|GL456447.1| GENE 10 9662 - 10777 1159 371 aa, chain - ## HITS:1 COG:lin0885 KEGG:ns NR:ns ## COG: lin0885 COG0787 # Protein_GI_number: 16799958 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Listeria innocua # 1 370 1 366 368 367 48.0 1e-101 MVVGWHRPTRLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGA TGFCVALLDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLT PESNTPLRVHLKVDTGMGRIGFLTPEETKQAVRFVQSHKEFLWEGIFTHFSTADEIDTSY FEKQAGRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPS YALKPALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGFTVL VNGKRCEIVGRVCMDQCMIRLAEEVPVGSVVTLVGKDGNEENTLQMVAEKLETIHYEVAC TFSQRIPREYN >gi|307679280|gb|GL456447.1| GENE 11 10807 - 11160 398 117 aa, chain - ## HITS:1 COG:SP1699 KEGG:ns NR:ns ## COG: SP1699 COG0736 # Protein_GI_number: 15901533 # Func_class: I Lipid transport and metabolism # Function: Phosphopantetheinyl transferase (holo-ACP synthase) # Organism: Streptococcus pneumoniae TIGR4 # 1 115 1 115 120 119 51.0 2e-27 MIKGIGIDAVELSRIKPIVEKQGSFIQRVLTPNELTLFEKLSTKRQIEFLAGRFACKEAF SKAWGTGIGKVGLQDIEVLTEKTGAPYVANSPHNGKVFVSITHTDTMAIAQIVLESE >gi|307679280|gb|GL456447.1| GENE 12 11264 - 11386 59 40 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPFYFFNLILQFAFYKNSEKFYKNVNRKKTYGTSICVRIL Prediction of potential genes in microbial genomes Time: Tue Jul 5 20:14:13 2011 Seq name: gi|307679279|gb|GL456448.1| Enterococcus faecalis TX0411 genomic scaffold Scfld154, whole genome shotgun sequence Length of sequence - 1104 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 1102 977 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases Predicted protein(s) >gi|307679279|gb|GL456448.1| GENE 1 1 - 1102 977 367 aa, chain - ## HITS:1 COG:SPy1904 KEGG:ns NR:ns ## COG: SPy1904 COG0610 # Protein_GI_number: 15675717 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Streptococcus pyogenes M1 GAS # 16 357 477 812 992 166 33.0 6e-41 EYSSEQINRMIDQMEPVKKESYLDPTIFEAEEHIQKVIHKMFRPDNAYTKFDFRNGRPTK SAILTTSSIDMAKKYYRAIKEMMKEPDWLTKEFPNQPIREGRTMEDPDFPRIAITYSLEE NSRDSSVQQEEMQKIIEEYNQYYDTAWSLADIERYNGDINNRLARKRAEFKQFGKQIDLV IVVDRLLTGFDAPTIQTLFVDRNLEYAGLIQAFSRTNRTYPEKTKGLIVTFRKPATMEKN VEDATKLYSEAKEESGLIYPSYQESKKRFKQAYGKLKEVSSMESIDEHTPLEIRIEYVKA FQELNRAYESLVTYDDYNDDMVQSSTLNNQIQLLEEQIGVYETVKGSLMEEELEKEGEDF STIEFYS Prediction of potential genes in microbial genomes Time: Tue Jul 5 20:16:03 2011 Seq name: gi|307679278|gb|GL456449.1| Enterococcus faecalis TX0411 genomic scaffold Scfld155, whole genome shotgun sequence Length of sequence - 329442 bp Number of predicted genes - 331, with homology - 322 Number of transcription units - 163, operones - 81 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 599 - 658 8.3 1 1 Tu 1 . + CDS 771 - 1181 279 ## EF1872 hypothetical protein + Prom 1358 - 1417 2.8 2 2 Op 1 . + CDS 1475 - 1822 178 ## EF1871 thioredoxin family protein 3 2 Op 2 . + CDS 1815 - 1982 139 ## gi|229545543|ref|ZP_04434268.1| hypothetical protein HMPREF0349_0760 + Prom 2012 - 2071 4.1 4 3 Op 1 36/0.000 + CDS 2117 - 3286 569 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 5 3 Op 2 36/0.000 + CDS 3293 - 3952 250 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 6 3 Op 3 . + CDS 3952 - 5328 949 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Term 5422 - 5471 6.1 - Term 5417 - 5452 3.5 7 4 Op 1 2/0.190 - CDS 5459 - 6079 231 ## COG3464 Transposase and inactivated derivatives 8 4 Op 2 . - CDS 6115 - 6369 91 ## COG3464 Transposase and inactivated derivatives 9 5 Tu 1 . - CDS 6501 - 6611 155 ## gi|69243909|ref|ZP_00602487.1| Transposase, IS204/IS1001/IS1096/IS1165 - Prom 6840 - 6899 7.8 + Prom 6799 - 6858 4.3 10 6 Op 1 40/0.000 + CDS 6883 - 7536 587 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Prom 7552 - 7611 11.1 11 6 Op 2 . + CDS 7674 - 8852 624 ## COG0642 Signal transduction histidine kinase 12 7 Op 1 . - CDS 9177 - 10130 553 ## COG3328 Transposase and inactivated derivatives - Term 10154 - 10178 -1.0 13 7 Op 2 . - CDS 10200 - 10346 278 ## EF1874 IS256 family transposase - Prom 10446 - 10505 10.2 + Prom 10480 - 10539 9.0 14 8 Op 1 1/0.333 + CDS 10600 - 11445 586 ## COG5495 Uncharacterized conserved protein 15 8 Op 2 19/0.000 + CDS 11457 - 12284 705 ## COG0413 Ketopantoate hydroxymethyltransferase 16 8 Op 3 12/0.000 + CDS 12299 - 13147 444 ## COG0414 Panthothenate synthetase 17 8 Op 4 . + CDS 13160 - 13555 336 ## COG0853 Aspartate 1-decarboxylase + Term 13706 - 13735 0.2 18 9 Op 1 11/0.000 - CDS 13708 - 13821 63 ## COG2801 Transposase and inactivated derivatives - Prom 13952 - 14011 5.4 19 9 Op 2 23/0.000 - CDS 14103 - 14939 361 ## COG2801 Transposase and inactivated derivatives 20 9 Op 3 . - CDS 14975 - 15304 70 ## COG2963 Transposase and inactivated derivatives - Prom 15324 - 15383 3.7 + Prom 15481 - 15540 8.8 21 10 Tu 1 . + CDS 15574 - 15663 164 ## + Prom 15739 - 15798 12.9 22 11 Tu 1 . + CDS 15870 - 16130 127 ## gi|227519043|ref|ZP_03949092.1| hypothetical protein HMPREF0348_2026 + Term 16315 - 16379 5.4 + Prom 16229 - 16288 4.6 23 12 Tu 1 . + CDS 16404 - 17696 941 ## COG3328 Transposase and inactivated derivatives 24 13 Op 1 . - CDS 17790 - 17954 95 ## gi|227519041|ref|ZP_03949090.1| hypothetical protein HMPREF0348_2024 25 13 Op 2 . - CDS 17951 - 18175 140 ## EF1853 hypothetical protein - Prom 18217 - 18276 12.7 + Prom 18221 - 18280 7.6 26 14 Tu 1 . + CDS 18313 - 19575 861 ## COG1455 Phosphotransferase system cellobiose-specific component IIC + Term 19622 - 19679 1.5 + Prom 19595 - 19654 7.3 27 15 Tu 1 . + CDS 19747 - 21582 1553 ## COG1874 Beta-galactosidase + Prom 22442 - 22501 7.8 28 16 Tu 1 . + CDS 22566 - 23744 700 ## COG0582 Integrase + Term 23914 - 23948 6.0 + Prom 24343 - 24402 11.6 29 17 Tu 1 . + CDS 24470 - 24637 114 ## gi|229545567|ref|ZP_04434292.1| hypothetical protein HMPREF0349_0784 + Prom 24665 - 24724 4.1 30 18 Op 1 . + CDS 24803 - 24886 130 ## 31 18 Op 2 . + CDS 24902 - 25210 219 ## EF1844 hypothetical protein + Term 25363 - 25431 22.1 32 19 Tu 1 . - CDS 25491 - 26396 731 ## COG0726 Predicted xylanase/chitin deacetylase - Prom 26532 - 26591 10.4 + Prom 26523 - 26582 8.7 33 20 Op 1 . + CDS 26620 - 27141 359 ## COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism 34 20 Op 2 . + CDS 27071 - 28141 746 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain + Prom 28199 - 28258 3.9 35 21 Op 1 . + CDS 28376 - 29908 1741 ## COG3227 Zinc metalloprotease (elastase) 36 21 Op 2 . + CDS 29957 - 30811 748 ## COG3591 V8-like Glu-specific endopeptidase + Term 30817 - 30879 13.1 - Term 30805 - 30867 13.1 37 22 Tu 1 . - CDS 30959 - 31789 605 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I + Prom 32013 - 32072 5.9 38 23 Tu 1 . + CDS 32181 - 33035 682 ## COG0583 Transcriptional regulator + Term 33063 - 33129 11.1 + Prom 33239 - 33298 4.2 39 24 Op 1 . + CDS 33417 - 34805 1095 ## COG0477 Permeases of the major facilitator superfamily 40 24 Op 2 . + CDS 34847 - 36907 1622 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily 41 24 Op 3 . + CDS 36834 - 37103 112 ## EF1812 hypothetical protein + Term 37238 - 37283 1.1 + Prom 37255 - 37314 11.6 42 25 Op 1 5/0.048 + CDS 37408 - 38253 767 ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases 43 25 Op 2 . + CDS 38243 - 39145 770 ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases 44 25 Op 3 . + CDS 39078 - 39209 88 ## gi|315036698|gb|EFT48630.1| hypothetical protein HMPREF9501_00532 + Term 39248 - 39303 17.1 + Prom 39333 - 39392 9.8 45 26 Op 1 7/0.000 + CDS 39531 - 40262 652 ## COG2188 Transcriptional regulators 46 26 Op 2 . + CDS 40274 - 41446 1402 ## COG2222 Predicted phosphosugar isomerases 47 26 Op 3 3/0.119 + CDS 41469 - 42464 1224 ## COG3684 Tagatose-1,6-bisphosphate aldolase 48 26 Op 4 . + CDS 42480 - 43421 852 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 49 26 Op 5 1/0.333 + CDS 43484 - 45268 1750 ## COG1874 Beta-galactosidase 50 26 Op 6 13/0.000 + CDS 45265 - 45744 528 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 51 26 Op 7 13/0.000 + CDS 45758 - 46657 1293 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 52 26 Op 8 4/0.071 + CDS 46644 - 47453 891 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 53 26 Op 9 . + CDS 47473 - 47880 471 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA + Term 47934 - 47985 13.2 + Prom 47938 - 47997 5.4 54 27 Tu 1 . + CDS 48030 - 52004 3958 ## EF1800 hypothetical protein + Prom 52452 - 52511 4.6 55 28 Tu 1 . + CDS 52542 - 53696 907 ## COG0628 Predicted permease + Term 53704 - 53740 3.4 + Prom 53729 - 53788 4.1 56 29 Tu 1 . + CDS 53817 - 54461 448 ## EF1797 hypothetical protein - Term 54424 - 54482 8.6 57 30 Tu 1 . - CDS 54508 - 55077 723 ## EF1796 putative lipoprotein - Prom 55108 - 55167 6.3 + Prom 55213 - 55272 4.9 58 31 Tu 1 . + CDS 55298 - 55750 699 ## COG4876 Uncharacterized protein conserved in bacteria + Prom 55842 - 55901 6.6 59 32 Tu 1 . + CDS 55941 - 56960 1185 ## COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase + Term 56966 - 57012 2.4 + Prom 56962 - 57021 7.7 60 33 Op 1 . + CDS 57096 - 57416 462 ## EF1792 hypothetical protein 61 33 Op 2 . + CDS 57479 - 59119 1580 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Term 59123 - 59185 13.1 - Term 59115 - 59164 11.5 62 34 Tu 1 . - CDS 59217 - 60092 330 ## PROTEIN SUPPORTED gi|90022317|ref|YP_528144.1| ribosomal protein S15 - Prom 60294 - 60353 8.4 + Prom 60153 - 60212 5.1 63 35 Tu 1 . + CDS 60241 - 61107 1107 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs + Term 61139 - 61171 2.5 + Prom 61193 - 61252 8.7 64 36 Op 1 29/0.000 + CDS 61281 - 61769 512 ## COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase 65 36 Op 2 1/0.333 + CDS 61762 - 62886 919 ## COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) + Term 62892 - 62920 -0.0 + Prom 62895 - 62954 9.2 66 37 Op 1 15/0.000 + CDS 63038 - 63751 678 ## COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase 67 37 Op 2 23/0.000 + CDS 63765 - 64016 389 ## COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component 68 37 Op 3 9/0.000 + CDS 64017 - 64691 662 ## COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain 69 37 Op 4 10/0.000 + CDS 64688 - 66907 2267 ## COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain 70 37 Op 5 13/0.000 + CDS 66883 - 68322 1334 ## COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase 71 37 Op 6 21/0.000 + CDS 68324 - 69355 761 ## PROTEIN SUPPORTED gi|149378138|ref|ZP_01895857.1| Ribosomal protein S7 72 37 Op 7 10/0.000 + CDS 69352 - 69924 269 ## COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN 73 37 Op 8 17/0.000 + CDS 69921 - 71462 1566 ## COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) 74 37 Op 9 . + CDS 71481 - 72728 1373 ## COG0151 Phosphoribosylamine-glycine ligase + Term 72743 - 72790 4.2 + Prom 72762 - 72821 8.8 75 38 Op 1 . + CDS 72856 - 73185 303 ## EF1776 hypothetical protein 76 38 Op 2 . + CDS 73206 - 73940 431 ## EF1775 hypothetical protein + Term 73950 - 74013 14.5 - Term 73939 - 73973 5.4 77 39 Tu 1 . - CDS 74006 - 74527 432 ## COG4708 Predicted membrane protein - Prom 74563 - 74622 2.0 78 40 Op 1 . - CDS 74673 - 75437 246 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 79 40 Op 2 . - CDS 75521 - 75754 457 ## EF1772 hypothetical protein 80 40 Op 3 . - CDS 75744 - 76406 640 ## COG1739 Uncharacterized conserved protein - Prom 76430 - 76489 9.8 81 41 Tu 1 . + CDS 76548 - 76835 303 ## EF1770 hypothetical protein + Prom 76846 - 76905 6.1 82 42 Op 1 . + CDS 76956 - 77291 436 ## COG1440 Phosphotransferase system cellobiose-specific component IIB 83 42 Op 2 . + CDS 77299 - 77376 64 ## 84 42 Op 3 6/0.048 + CDS 77391 - 78707 837 ## COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) + Term 78835 - 78880 1.2 + Prom 78872 - 78931 3.7 85 43 Tu 1 . + CDS 78964 - 79383 263 ## COG1040 Predicted amidophosphoribosyltransferases + Term 79459 - 79504 3.1 + Prom 79395 - 79454 4.5 86 44 Op 1 7/0.000 + CDS 79522 - 80073 669 ## PROTEIN SUPPORTED gi|116333275|ref|YP_794802.1| ribosome-associated protein Y (PSrp-1) + Term 80086 - 80127 8.9 + Prom 80199 - 80258 6.6 87 44 Op 2 . + CDS 80329 - 82866 3126 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) + Term 82879 - 82920 6.4 88 45 Op 1 . + CDS 82943 - 83017 74 ## 89 45 Op 2 4/0.071 + CDS 83061 - 84044 1019 ## COG1186 Protein chain release factor B + Prom 84060 - 84119 8.8 90 46 Op 1 28/0.000 + CDS 84150 - 84836 357 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 91 46 Op 2 . + CDS 84829 - 85713 921 ## COG2177 Cell division protein + Term 85715 - 85763 16.7 + Prom 85799 - 85858 11.0 92 47 Op 1 39/0.000 + CDS 85889 - 86743 1112 ## COG0226 ABC-type phosphate transport system, periplasmic component + Prom 86770 - 86829 4.3 93 47 Op 2 38/0.000 + CDS 86866 - 87786 1065 ## COG0573 ABC-type phosphate transport system, permease component 94 47 Op 3 41/0.000 + CDS 87786 - 88670 901 ## COG0581 ABC-type phosphate transport system, permease component 95 47 Op 4 7/0.000 + CDS 88687 - 89496 306 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 96 47 Op 5 32/0.000 + CDS 89489 - 90265 287 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 97 47 Op 6 . + CDS 90280 - 90957 811 ## COG0704 Phosphate uptake regulator + Term 91007 - 91044 -0.7 + Prom 90974 - 91033 4.7 98 48 Op 1 4/0.071 + CDS 91167 - 92768 2046 ## COG3595 Uncharacterized conserved protein + Term 92776 - 92831 8.5 99 48 Op 2 . + CDS 92843 - 93166 453 ## COG1983 Putative stress-responsive transcriptional regulator 100 48 Op 3 . + CDS 93166 - 93522 273 ## EF1751 hypothetical protein + Term 93528 - 93576 11.1 101 49 Tu 1 . - CDS 93558 - 94520 906 ## COG0322 Nuclease subunit of the excinuclease complex - Prom 94547 - 94606 6.4 + Prom 94584 - 94643 6.3 102 50 Op 1 10/0.000 + CDS 94730 - 95665 1086 ## COG1493 Serine kinase of the HPr protein, regulates carbohydrate metabolism 103 50 Op 2 . + CDS 95680 - 96516 710 ## COG0682 Prolipoprotein diacylglyceryltransferase 104 50 Op 3 3/0.119 + CDS 96585 - 97607 1426 ## COG0240 Glycerol-3-phosphate dehydrogenase 105 50 Op 4 . + CDS 97619 - 98515 1238 ## COG1210 UDP-glucose pyrophosphorylase + Term 98523 - 98577 7.3 + Prom 98603 - 98662 7.2 106 51 Op 1 3/0.119 + CDS 98693 - 99124 586 ## COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain 107 51 Op 2 . + CDS 99140 - 99727 1106 ## COG4980 Gas vesicle protein + Term 99798 - 99850 17.4 - Term 99782 - 99839 17.2 108 52 Tu 1 . - CDS 99848 - 100951 1315 ## COG0006 Xaa-Pro aminopeptidase - Prom 101142 - 101201 7.5 + Prom 101043 - 101102 5.8 109 53 Tu 1 . + CDS 101166 - 102167 1278 ## COG1609 Transcriptional regulators + Term 102187 - 102253 16.8 + Prom 102228 - 102287 4.2 110 54 Op 1 . + CDS 102354 - 103049 197 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 111 54 Op 2 . + CDS 103042 - 104142 580 ## gi|229545648|ref|ZP_04434373.1| ABC superfamily ATP binding cassette, membrane protein + Term 104245 - 104296 11.5 - Term 104224 - 104292 12.2 112 55 Tu 1 . - CDS 104328 - 106706 2290 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) - Prom 106735 - 106794 8.3 113 56 Tu 1 . + CDS 106918 - 108180 727 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 + Prom 108279 - 108338 6.1 114 57 Op 1 . + CDS 108361 - 109023 644 ## EF1738 hypothetical protein 115 57 Op 2 . + CDS 109023 - 109490 424 ## EF1737 hypothetical protein 116 57 Op 3 . + CDS 109501 - 110394 1116 ## COG0648 Endonuclease IV + Term 110404 - 110449 7.2 + Prom 110494 - 110553 8.0 117 58 Tu 1 . + CDS 110589 - 110807 355 ## COG3763 Uncharacterized protein conserved in bacteria + Term 110836 - 110884 7.0 + Prom 110846 - 110905 3.6 118 59 Op 1 35/0.000 + CDS 111005 - 112756 200 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 119 59 Op 2 . + CDS 112756 - 114540 191 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 + Term 114576 - 114624 7.0 + Prom 114578 - 114637 3.9 120 60 Op 1 . + CDS 114657 - 115457 580 ## COG0710 3-dehydroquinate dehydratase 121 60 Op 2 . + CDS 115475 - 115969 658 ## COG2606 Uncharacterized conserved protein 122 61 Tu 1 . + CDS 116034 - 116117 60 ## + Term 116123 - 116165 -0.7 - Term 115889 - 115922 -0.7 123 62 Tu 1 . - CDS 116099 - 116506 443 ## COG0328 Ribonuclease HI - Prom 116614 - 116673 7.2 + Prom 116502 - 116561 6.2 124 63 Tu 1 . + CDS 116607 - 117068 302 ## EF1727 EbsA protein - Term 117041 - 117095 9.2 125 64 Tu 1 . - CDS 117173 - 117379 236 ## COG1278 Cold shock proteins - Prom 117411 - 117470 6.3 + Prom 117452 - 117511 6.3 126 65 Tu 1 . + CDS 117558 - 119228 2216 ## COG2759 Formyltetrahydrofolate synthetase + Prom 119242 - 119301 4.4 127 66 Op 1 . + CDS 119333 - 120037 724 ## EF1724 CBS domain-containing protein 128 66 Op 2 15/0.000 + CDS 120043 - 120519 530 ## COG0597 Lipoprotein signal peptidase 129 66 Op 3 4/0.071 + CDS 120506 - 121411 350 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit + Term 121592 - 121633 7.1 130 67 Op 1 7/0.000 + CDS 121753 - 122289 854 ## COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase 131 67 Op 2 6/0.048 + CDS 122306 - 123586 1069 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 132 67 Op 3 15/0.000 + CDS 123600 - 124526 1137 ## COG0540 Aspartate carbamoyltransferase, catalytic chain 133 67 Op 4 7/0.000 + CDS 124535 - 125818 1562 ## COG0044 Dihydroorotase and related cyclic amidohydrolases 134 67 Op 5 24/0.000 + CDS 125821 - 126900 1079 ## COG0505 Carbamoylphosphate synthase small subunit 135 67 Op 6 3/0.119 + CDS 126900 - 130082 3881 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) + Term 130090 - 130137 4.2 136 68 Op 1 13/0.000 + CDS 130190 - 130981 852 ## COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases 137 68 Op 2 5/0.048 + CDS 130978 - 131916 996 ## COG0167 Dihydroorotate dehydrogenase 138 68 Op 3 9/0.000 + CDS 131906 - 132619 891 ## COG0284 Orotidine-5'-phosphate decarboxylase 139 68 Op 4 . + CDS 132621 - 133253 857 ## COG0461 Orotate phosphoribosyltransferase + Term 133258 - 133310 2.1 + Prom 133344 - 133403 5.2 140 69 Op 1 . + CDS 133451 - 134149 459 ## COG3338 Carbonic anhydrase 141 69 Op 2 . + CDS 134168 - 135097 875 ## COG0583 Transcriptional regulator + Term 135143 - 135196 7.5 - Term 135053 - 135089 -0.3 142 70 Tu 1 . - CDS 135286 - 136332 1087 ## COG1609 Transcriptional regulators - Prom 136361 - 136420 9.2 + Prom 136395 - 136454 9.1 143 71 Op 1 5/0.048 + CDS 136489 - 137778 1497 ## COG3538 Uncharacterized conserved protein 144 71 Op 2 . + CDS 137790 - 140480 2897 ## COG0383 Alpha-mannosidase + Term 140486 - 140533 11.2 + Prom 140505 - 140564 7.3 145 72 Op 1 . + CDS 140642 - 141820 1465 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase + Prom 141845 - 141904 9.3 146 72 Op 2 . + CDS 141931 - 142821 1165 ## COG0226 ABC-type phosphate transport system, periplasmic component + Term 142823 - 142880 14.1 - Term 142819 - 142857 5.4 147 73 Op 1 40/0.000 - CDS 142863 - 144638 1514 ## COG0642 Signal transduction histidine kinase 148 73 Op 2 . - CDS 144635 - 145345 778 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 145471 - 145530 3.1 149 74 Op 1 . + CDS 145508 - 145972 536 ## COG1683 Uncharacterized conserved protein 150 74 Op 2 8/0.000 + CDS 146011 - 146394 460 ## COG2739 Uncharacterized protein conserved in bacteria 151 74 Op 3 . + CDS 146399 - 147817 1990 ## COG0541 Signal recognition particle GTPase + Term 147846 - 147902 17.6 - Term 147832 - 147890 18.0 152 75 Op 1 . - CDS 147892 - 148644 823 ## COG0789 Predicted transcriptional regulators - Prom 148698 - 148757 10.8 - Term 148699 - 148751 13.5 153 75 Op 2 . - CDS 148765 - 149319 728 ## COG0431 Predicted flavoprotein - Prom 149416 - 149475 10.5 + Prom 149304 - 149363 8.2 154 76 Tu 1 . + CDS 149461 - 150264 647 ## EF1695 acetyltransferase + Prom 150314 - 150373 4.0 155 77 Op 1 19/0.000 + CDS 150394 - 150687 493 ## PROTEIN SUPPORTED gi|227518885|ref|ZP_03948934.1| ribosomal protein S16 156 77 Op 2 . + CDS 150699 - 150944 385 ## COG1837 Predicted RNA-binding protein (contains KH domain) + Term 150955 - 150987 2.4 + Prom 150982 - 151041 6.6 157 78 Tu 1 . + CDS 151065 - 151628 671 ## EF1692 hypothetical protein + Term 151637 - 151677 4.2 + Prom 151757 - 151816 8.6 158 79 Op 1 4/0.071 + CDS 151843 - 152784 1008 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III 159 79 Op 2 . + CDS 152785 - 153573 966 ## COG0300 Short-chain dehydrogenases of various substrate specificities 160 79 Op 3 3/0.119 + CDS 153590 - 154057 665 ## COG5416 Uncharacterized integral membrane protein + Term 154096 - 154143 7.4 + Prom 154077 - 154136 3.1 161 80 Op 1 7/0.000 + CDS 154212 - 156524 2230 ## COG0608 Single-stranded DNA-specific exonuclease 162 80 Op 2 . + CDS 156527 - 157039 784 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins + Term 157046 - 157103 15.6 - Term 157045 - 157081 8.2 163 81 Tu 1 . - CDS 157145 - 157342 243 ## EF1686 hypothetical protein - Prom 157380 - 157439 7.3 - Term 157483 - 157521 9.5 164 82 Tu 1 . - CDS 157536 - 158189 723 ## COG1272 Predicted membrane protein, hemolysin III homolog - Prom 158267 - 158326 4.8 + Prom 158193 - 158252 7.7 165 83 Tu 1 . + CDS 158321 - 159163 1061 ## COG1307 Uncharacterized protein conserved in bacteria + Term 159213 - 159255 1.1 166 84 Op 1 3/0.119 + CDS 159267 - 160166 979 ## COG2755 Lysophospholipase L1 and related esterases 167 84 Op 2 1/0.333 + CDS 160168 - 160812 646 ## COG4698 Uncharacterized protein conserved in bacteria 168 84 Op 3 2/0.190 + CDS 160829 - 161344 660 ## COG0225 Peptide methionine sulfoxide reductase 169 84 Op 4 1/0.333 + CDS 161350 - 161568 300 ## COG4479 Uncharacterized protein conserved in bacteria + Term 161574 - 161612 5.4 + Prom 161570 - 161629 4.5 170 85 Op 1 . + CDS 161665 - 163098 1750 ## COG0793 Periplasmic protease 171 85 Op 2 . + CDS 163117 - 163671 536 ## COG0681 Signal peptidase I + Term 163676 - 163727 11.2 + Prom 163713 - 163772 2.9 172 86 Tu 1 . + CDS 163792 - 164235 487 ## EF1677 putative lipoprotein + Term 164269 - 164318 14.2 + Prom 164291 - 164350 8.6 173 87 Op 1 8/0.000 + CDS 164384 - 164752 546 ## COG1725 Predicted transcriptional regulators 174 87 Op 2 . + CDS 164749 - 165603 824 ## COG1131 ABC-type multidrug transport system, ATPase component 175 87 Op 3 . + CDS 165605 - 166336 529 ## EF1674 hypothetical protein + Term 166342 - 166402 11.2 + Prom 166394 - 166453 3.4 176 88 Op 1 36/0.000 + CDS 166529 - 167209 288 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 177 88 Op 2 . + CDS 167210 - 168493 1375 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Prom 168518 - 168577 8.9 178 89 Tu 1 . + CDS 168611 - 169552 1161 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases + Term 169608 - 169649 10.0 179 90 Op 1 . - CDS 169578 - 169670 67 ## 180 90 Op 2 7/0.000 - CDS 169646 - 170248 617 ## COG0400 Predicted esterase 181 90 Op 3 3/0.119 - CDS 170261 - 171223 1166 ## COG0346 Lactoylglutathione lyase and related lyases 182 90 Op 4 5/0.048 - CDS 171234 - 171662 554 ## COG1846 Transcriptional regulators - Prom 171689 - 171748 9.6 - Term 171729 - 171777 13.3 183 91 Tu 1 . - CDS 171791 - 172585 955 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - Prom 172731 - 172790 4.3 + Prom 172755 - 172814 9.0 184 92 Tu 1 . + CDS 172836 - 173534 578 ## EF1666 hypothetical protein + Prom 173554 - 173613 7.9 185 93 Tu 1 . + CDS 173639 - 174361 631 ## EF1665 hypothetical protein - Term 174376 - 174415 10.0 186 94 Tu 1 . - CDS 174440 - 175474 826 ## COG1434 Uncharacterized conserved protein - Prom 175659 - 175718 8.1 187 95 Op 1 . + CDS 175590 - 175712 78 ## 188 95 Op 2 3/0.119 + CDS 175757 - 176578 769 ## COG0280 Phosphotransacetylase 189 95 Op 3 2/0.190 + CDS 176597 - 177679 1231 ## COG3426 Butyrate kinase 190 95 Op 4 5/0.048 + CDS 177685 - 179094 818 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 191 95 Op 5 28/0.000 + CDS 179111 - 180097 1204 ## COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit 192 95 Op 6 24/0.000 + CDS 180119 - 181105 1417 ## COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit 193 95 Op 7 . + CDS 181129 - 182427 1533 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes + Term 182460 - 182505 6.5 + Prom 182432 - 182491 3.7 194 96 Tu 1 . + CDS 182571 - 183623 1136 ## COG3641 Predicted membrane protein, putative toxin regulator 195 97 Tu 1 . - CDS 183632 - 184522 732 ## COG0583 Transcriptional regulator - Prom 184566 - 184625 10.2 + Prom 184546 - 184605 7.3 196 98 Tu 1 . + CDS 184699 - 185640 921 ## COG1893 Ketopantoate reductase + Term 185720 - 185767 7.2 + Prom 185653 - 185712 4.4 197 99 Op 1 8/0.000 + CDS 185917 - 186768 962 ## COG1161 Predicted GTPases 198 99 Op 2 2/0.190 + CDS 186770 - 187537 1163 ## COG0164 Ribonuclease HII 199 99 Op 3 . + CDS 187598 - 188461 738 ## COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake + Prom 188473 - 188532 2.1 200 99 Op 4 . + CDS 188552 - 189205 591 ## COG1266 Predicted metal-dependent membrane protease + Prom 189268 - 189327 4.3 201 100 Tu 1 . + CDS 189390 - 191468 2265 ## COG0550 Topoisomerase IA + Term 191477 - 191514 5.1 + Prom 191497 - 191556 4.8 202 101 Tu 1 . + CDS 191576 - 192883 1539 ## COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation + Term 192905 - 192956 4.1 + Prom 192939 - 192998 6.6 203 102 Op 1 4/0.071 + CDS 193095 - 193994 903 ## COG4974 Site-specific recombinase XerD 204 102 Op 2 24/0.000 + CDS 194023 - 194571 804 ## COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit 205 102 Op 3 4/0.071 + CDS 194586 - 195989 1348 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 206 102 Op 4 . + CDS 196010 - 196792 905 ## COG4465 Pleiotropic transcriptional repressor 207 102 Op 5 . + CDS 196826 - 197701 1060 ## COG2017 Galactose mutarotase and related enzymes + Term 197703 - 197753 16.3 - Term 197691 - 197741 16.3 208 103 Tu 1 . - CDS 197743 - 198372 785 ## COG0344 Predicted membrane protein - Prom 198516 - 198575 7.5 + Prom 198844 - 198903 3.7 209 104 Op 1 33/0.000 + CDS 198924 - 199883 1151 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component 210 104 Op 2 35/0.000 + CDS 199876 - 200883 965 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 211 104 Op 3 . + CDS 200880 - 201647 220 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 212 105 Op 1 . + CDS 201777 - 202232 601 ## COG4917 Ethanolamine utilization protein 213 105 Op 2 . + CDS 202229 - 202810 826 ## COG2096 Uncharacterized conserved protein + Term 202972 - 203010 -0.7 + Prom 203130 - 203189 9.7 214 106 Tu 1 . + CDS 203297 - 204427 1159 ## COG1454 Alcohol dehydrogenase, class IV + Term 204506 - 204564 12.2 + Prom 204508 - 204567 6.7 215 107 Op 1 . + CDS 204587 - 204934 405 ## COG4810 Ethanolamine utilization protein 216 107 Op 2 3/0.119 + CDS 204962 - 205534 709 ## COG3707 Response regulator with putative antiterminator output domain 217 107 Op 3 2/0.190 + CDS 205535 - 206968 1190 ## COG3920 Signal transduction histidine kinase + Term 206979 - 207038 -0.7 218 107 Op 4 5/0.048 + CDS 207059 - 208483 1573 ## COG4819 Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition 219 107 Op 5 8/0.000 + CDS 208501 - 209865 1627 ## COG4303 Ethanolamine ammonia-lyase, large subunit 220 107 Op 6 6/0.048 + CDS 209883 - 210794 1240 ## COG4302 Ethanolamine ammonia-lyase, small subunit 221 107 Op 7 4/0.071 + CDS 210808 - 211461 1023 ## COG4816 Ethanolamine utilization protein 222 107 Op 8 2/0.190 + CDS 211475 - 211993 794 ## COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein 223 107 Op 9 2/0.190 + CDS 211984 - 213462 1492 ## COG1012 NAD-dependent aldehyde dehydrogenases + Term 213500 - 213541 -0.5 + Prom 213505 - 213564 7.2 224 108 Op 1 . + CDS 213586 - 213876 503 ## COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein + Term 213886 - 213934 10.0 225 108 Op 2 . + CDS 213944 - 214507 283 ## EF1622 hypothetical protein 226 108 Op 3 . + CDS 214520 - 215146 795 ## COG4869 Propanediol utilization protein 227 108 Op 4 . + CDS 215161 - 215760 425 ## EF1620 hypothetical protein 228 108 Op 5 . + CDS 215773 - 216036 451 ## COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein 229 108 Op 6 2/0.190 + CDS 216049 - 217149 1702 ## COG3192 Ethanolamine utilization protein 230 108 Op 7 . + CDS 217162 - 217605 594 ## COG4766 Ethanolamine utilization protein + Prom 217611 - 217670 8.0 231 108 Op 8 2/0.190 + CDS 217693 - 218121 600 ## COG1832 Predicted CoA-binding protein + Prom 218143 - 218202 7.7 232 109 Op 1 24/0.000 + CDS 218326 - 220383 2558 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 233 109 Op 2 . + CDS 220396 - 222858 2736 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit + Term 222880 - 222925 14.6 + Prom 223036 - 223095 9.7 234 110 Op 1 11/0.000 + CDS 223148 - 225394 2503 ## COG1882 Pyruvate-formate lyase + Term 225421 - 225455 2.0 235 110 Op 2 2/0.190 + CDS 225471 - 226235 723 ## COG1180 Pyruvate-formate lyase-activating enzyme + Term 226240 - 226303 12.2 + Prom 226246 - 226305 7.5 236 111 Op 1 . + CDS 226331 - 227257 1300 ## COG1227 Inorganic pyrophosphatase/exopolyphosphatase 237 111 Op 2 . + CDS 227329 - 228213 731 ## EF1610 hypothetical protein + Term 228256 - 228306 11.5 238 112 Tu 1 . - CDS 228272 - 228823 583 ## COG4843 Uncharacterized protein conserved in bacteria - Prom 228978 - 229037 7.2 + Prom 228820 - 228879 6.8 239 113 Tu 1 . + CDS 229004 - 230464 1391 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes + Term 230474 - 230524 11.7 + Prom 230527 - 230586 9.5 240 114 Op 1 8/0.000 + CDS 230747 - 232627 1748 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 241 114 Op 2 . + CDS 232627 - 234036 1355 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase + Term 234041 - 234093 11.5 + Prom 234059 - 234118 4.7 242 115 Tu 1 . + CDS 234146 - 234307 238 ## EF1605 hypothetical protein + Term 234345 - 234374 1.4 - Term 234333 - 234362 1.4 243 116 Op 1 5/0.048 - CDS 234367 - 235347 1027 ## COG1609 Transcriptional regulators 244 116 Op 2 . - CDS 235366 - 236838 1030 ## COG1621 Beta-fructosidases (levanase/invertase) - Prom 236958 - 237017 10.5 + Prom 236952 - 237011 8.0 245 117 Op 1 9/0.000 + CDS 237069 - 238742 1581 ## COG0366 Glycosidases 246 117 Op 2 . + CDS 238759 - 240687 1935 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Term 240694 - 240740 11.3 - Term 240798 - 240841 10.1 247 118 Tu 1 . - CDS 240852 - 240914 122 ## - Prom 240937 - 240996 7.5 + Prom 240909 - 240968 5.1 248 119 Tu 1 . + CDS 240996 - 241841 641 ## EF1599 transcriptional regulator Cro/CI family protein + Term 241855 - 241898 10.3 + Prom 241889 - 241948 4.1 249 120 Tu 1 . + CDS 241974 - 243407 1098 ## COG0415 Deoxyribodipyrimidine photolyase + Term 243412 - 243470 4.0 - Term 243550 - 243605 7.4 250 121 Tu 1 . - CDS 243620 - 245056 1356 ## COG0753 Catalase - Prom 245081 - 245140 10.0 - Term 245275 - 245313 5.4 251 122 Tu 1 . - CDS 245359 - 246369 1121 ## EF1596 putative lipoprotein - Prom 246406 - 246465 8.2 - Term 246408 - 246449 5.2 252 123 Op 1 1/0.333 - CDS 246509 - 246943 493 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - Prom 246971 - 247030 3.1 - Term 246980 - 247022 1.4 253 123 Op 2 35/0.000 - CDS 247032 - 248810 232 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 254 123 Op 3 . - CDS 248803 - 250551 225 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 - Prom 250645 - 250704 7.1 + Prom 250445 - 250504 8.5 255 124 Tu 1 . + CDS 250688 - 251506 885 ## COG2207 AraC-type DNA-binding domain-containing proteins 256 125 Tu 1 . - CDS 251561 - 252088 576 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 252131 - 252190 6.1 257 126 Tu 1 . + CDS 252446 - 253054 642 ## COG1051 ADP-ribose pyrophosphatase + Term 253061 - 253098 7.3 - Term 253049 - 253086 7.3 258 127 Tu 1 . - CDS 253105 - 254445 1766 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases - Prom 254561 - 254620 8.5 - Term 254641 - 254683 9.2 259 128 Op 1 . - CDS 254743 - 255186 578 ## COG0735 Fe2+/Zn2+ uptake regulation proteins - Prom 255212 - 255271 6.0 - Term 255264 - 255308 1.1 260 128 Op 2 . - CDS 255325 - 256257 1052 ## PROTEIN SUPPORTED gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 - Prom 256319 - 256378 10.2 - Term 256417 - 256460 10.3 261 129 Tu 1 . - CDS 256486 - 257346 1110 ## COG1705 Muramidase (flagellum-specific) - Prom 257538 - 257597 6.2 + Prom 257524 - 257583 7.4 262 130 Tu 1 . + CDS 257701 - 258891 1078 ## COG0477 Permeases of the major facilitator superfamily + Term 258893 - 258948 2.9 - Term 258881 - 258935 9.0 263 131 Op 1 4/0.071 - CDS 258943 - 260937 2616 ## COG0021 Transketolase 264 131 Op 2 . - CDS 261009 - 261251 404 ## COG4224 Uncharacterized protein conserved in bacteria - Prom 261274 - 261333 6.0 + Prom 261319 - 261378 6.2 265 132 Tu 1 . + CDS 261402 - 262022 714 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) + Term 262031 - 262068 2.4 - Term 261873 - 261908 -1.0 266 133 Op 1 . - CDS 262036 - 263205 1172 ## COG1600 Uncharacterized Fe-S protein 267 133 Op 2 16/0.000 - CDS 263229 - 263723 604 ## COG0262 Dihydrofolate reductase 268 133 Op 3 1/0.333 - CDS 263741 - 264688 1101 ## COG0207 Thymidylate synthase 269 133 Op 4 . - CDS 264706 - 266595 2106 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 266641 - 266700 8.9 + Prom 266414 - 266473 2.2 270 134 Tu 1 . + CDS 266559 - 266654 67 ## + Term 266660 - 266711 1.2 - Term 266647 - 266699 9.0 271 135 Op 1 . - CDS 266706 - 268760 2371 ## COG0025 NhaP-type Na+/H+ and K+/H+ antiporters 272 135 Op 2 . - CDS 268796 - 269062 319 ## EF1573 hypothetical protein - Prom 269090 - 269149 9.4 273 136 Op 1 . - CDS 269206 - 269682 381 ## EF1572 hypothetical protein 274 136 Op 2 . - CDS 269694 - 269888 258 ## EF1571 hypothetical protein - Prom 269964 - 270023 8.3 - Term 270026 - 270081 13.1 275 137 Op 1 . - CDS 270082 - 270930 950 ## COG1307 Uncharacterized protein conserved in bacteria 276 137 Op 2 1/0.333 - CDS 271006 - 272178 1228 ## COG1316 Transcriptional regulator - Prom 272212 - 272271 5.7 - Term 272256 - 272309 11.4 277 138 Op 1 2/0.190 - CDS 272322 - 273170 888 ## COG0077 Prephenate dehydratase 278 138 Op 2 5/0.048 - CDS 273178 - 273684 549 ## COG0703 Shikimate kinase 279 138 Op 3 6/0.048 - CDS 273704 - 274984 1446 ## COG0128 5-enolpyruvylshikimate-3-phosphate synthase 280 138 Op 4 1/0.333 - CDS 274997 - 276091 1077 ## COG0287 Prephenate dehydrogenase 281 138 Op 5 7/0.000 - CDS 276125 - 277291 1524 ## COG0082 Chorismate synthase 282 138 Op 6 3/0.119 - CDS 277293 - 278369 1307 ## COG0337 3-dehydroquinate synthetase 283 138 Op 7 . - CDS 278392 - 279417 1265 ## COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase 284 138 Op 8 . - CDS 279454 - 280320 785 ## COG0169 Shikimate 5-dehydrogenase - Prom 280356 - 280415 2.5 - Term 280755 - 280800 11.3 285 139 Op 1 . - CDS 280809 - 281264 581 ## EF1560 hypothetical protein - Prom 281292 - 281351 3.9 286 139 Op 2 . - CDS 281354 - 281728 486 ## COG5496 Predicted thioesterase 287 139 Op 3 1/0.333 - CDS 281728 - 283002 1316 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase 288 139 Op 4 3/0.119 - CDS 282945 - 283724 935 ## COG0289 Dihydrodipicolinate reductase 289 139 Op 5 . - CDS 283717 - 284067 444 ## COG1694 Predicted pyrophosphatase - Prom 284156 - 284215 8.6 + Prom 284112 - 284171 2.1 290 140 Tu 1 . + CDS 284191 - 285075 1009 ## COG1284 Uncharacterized conserved protein + Term 285077 - 285123 12.3 - Term 285065 - 285111 12.3 291 141 Op 1 4/0.071 - CDS 285113 - 285652 655 ## COG5582 Uncharacterized conserved protein 292 141 Op 2 . - CDS 285662 - 286918 1604 ## COG0457 FOG: TPR repeat 293 141 Op 3 . - CDS 286928 - 287968 851 ## EF1552 hypothetical protein - Prom 288176 - 288235 6.5 - Term 288226 - 288261 7.1 294 142 Tu 1 . - CDS 288274 - 288549 179 ## PROTEIN SUPPORTED gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 - Prom 288702 - 288761 6.6 - Term 288621 - 288662 -0.1 295 143 Tu 1 . - CDS 288797 - 290107 1826 ## COG1160 Predicted GTPases - Prom 290134 - 290193 4.3 - Term 290204 - 290258 16.2 296 144 Op 1 21/0.000 - CDS 290281 - 291492 2025 ## PROTEIN SUPPORTED gi|29376111|ref|NP_815265.1| 30S ribosomal protein S1 - Prom 291541 - 291600 7.8 297 144 Op 2 . - CDS 291606 - 292286 814 ## COG0283 Cytidylate kinase - Prom 292330 - 292389 4.6 - Term 292393 - 292446 11.3 298 145 Op 1 . - CDS 292523 - 293164 718 ## EF1546 LysM domain-containing protein 299 145 Op 2 4/0.071 - CDS 293240 - 294676 1156 ## COG0514 Superfamily II DNA helicase 300 145 Op 3 . - CDS 294683 - 295717 758 ## COG4955 Uncharacterized protein conserved in bacteria - Prom 295910 - 295969 5.4 + Prom 295650 - 295709 6.7 301 146 Tu 1 . + CDS 295753 - 295971 209 ## COG1141 Ferredoxin + Term 296075 - 296114 -0.1 - Term 295943 - 295993 17.3 302 147 Op 1 . - CDS 295994 - 297400 1306 ## COG4640 Predicted membrane protein - Prom 297426 - 297485 6.3 - Term 297520 - 297576 11.3 303 147 Op 2 . - CDS 297581 - 298246 605 ## COG3601 Predicted membrane protein - Term 298535 - 298578 7.1 304 148 Op 1 12/0.000 - CDS 298591 - 299307 1062 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 305 148 Op 2 21/0.000 - CDS 299311 - 299916 785 ## COG1386 Predicted transcriptional regulator containing the HTH domain 306 148 Op 3 . - CDS 299913 - 300698 925 ## COG1354 Uncharacterized conserved protein 307 148 Op 4 . - CDS 300772 - 301662 895 ## COG4974 Site-specific recombinase XerD - Prom 301690 - 301749 6.1 - Term 301742 - 301799 16.6 308 149 Op 1 . - CDS 301831 - 302760 1189 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 302787 - 302846 8.9 - Term 302876 - 302927 12.2 309 149 Op 2 . - CDS 302955 - 304046 1285 ## COG3589 Uncharacterized conserved protein - Prom 304066 - 304125 8.3 + Prom 304028 - 304087 7.1 310 150 Tu 1 . + CDS 304228 - 304977 806 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family + Term 304978 - 305034 15.2 - Term 304965 - 305020 17.1 311 151 Op 1 . - CDS 305021 - 305395 523 ## COG5294 Uncharacterized protein conserved in bacteria - Prom 305432 - 305491 4.7 312 151 Op 2 . - CDS 305538 - 306077 585 ## EF1531 TetR family transcriptional regulator - Prom 306153 - 306212 10.2 - Term 306233 - 306287 17.0 313 152 Op 1 . - CDS 306302 - 307600 1568 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 314 152 Op 2 . - CDS 307627 - 307929 314 ## EF1528 hypothetical protein - Prom 307965 - 308024 11.3 - Term 308020 - 308064 7.1 315 153 Tu 1 . - CDS 308068 - 309384 2046 ## COG0536 Predicted GTPase - Prom 309449 - 309508 4.5 + Prom 309544 - 309603 5.7 316 154 Tu 1 . + CDS 309672 - 310682 1210 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase + Term 310693 - 310747 14.3 - Term 310687 - 310727 8.2 317 155 Tu 1 . - CDS 310733 - 311182 491 ## COG0735 Fe2+/Zn2+ uptake regulation proteins - Prom 311237 - 311296 8.2 318 156 Tu 1 . - CDS 311298 - 312179 525 ## PROTEIN SUPPORTED gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains - Term 312191 - 312239 11.0 319 157 Tu 1 . - CDS 312253 - 314316 2432 ## EF1523 hypothetical protein - Prom 314348 - 314407 4.5 - Term 314412 - 314455 11.5 320 158 Op 1 31/0.000 - CDS 314468 - 315574 1556 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) - Prom 315603 - 315662 2.9 - Term 315630 - 315678 4.1 321 158 Op 2 . - CDS 315683 - 317569 1887 ## COG0358 DNA primase (bacterial type) - Prom 317671 - 317730 4.0 - Term 317721 - 317783 14.2 322 159 Tu 1 . - CDS 317886 - 320222 2386 ## COG0474 Cation transport ATPase - Prom 320261 - 320320 5.0 - Term 320281 - 320348 17.4 323 160 Tu 1 . - CDS 320351 - 320935 718 ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) - Prom 321032 - 321091 6.2 - Term 321164 - 321211 5.2 324 161 Tu 1 1/0.333 - CDS 321259 - 321948 483 ## COG0036 Pentose-5-phosphate-3-epimerase 325 162 Op 1 7/0.000 - CDS 322086 - 323186 1250 ## COG1299 Phosphotransferase system, fructose-specific IIC component - Prom 323228 - 323287 5.0 - Term 323228 - 323276 0.1 326 162 Op 2 8/0.000 - CDS 323296 - 323745 459 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 327 162 Op 3 . - CDS 323765 - 324082 534 ## COG1445 Phosphotransferase system fructose-specific component IIB 328 162 Op 4 . - CDS 324082 - 324534 531 ## CAR_c23180 hypothetical protein 329 162 Op 5 7/0.000 - CDS 324524 - 326005 865 ## COG3711 Transcriptional antiterminator - Prom 326103 - 326162 5.6 - Term 326196 - 326242 10.2 330 163 Op 1 7/0.000 - CDS 326246 - 328243 2475 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 331 163 Op 2 . - CDS 328280 - 329113 879 ## COG3711 Transcriptional antiterminator - Prom 329286 - 329345 10.5 Predicted protein(s) >gi|307679278|gb|GL456449.1| GENE 1 771 - 1181 279 136 aa, chain + ## HITS:1 COG:no KEGG:EF1872 NR:ns ## KEGG: EF1872 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 136 1 136 136 211 100.0 5e-54 MGVKKVKIKEGQSISSEEEGMSINANGKNETFKPSDYTLEAKKEYVYEYLGLKFKLSDKF RNYIADKKIAMLDDQSPIDKELKYAILTFEKMTEEQKNAVIEKMGDGYKNWQNELERIGT IGIFEKNTSEEKNLKL >gi|307679278|gb|GL456449.1| GENE 2 1475 - 1822 178 115 aa, chain + ## HITS:1 COG:no KEGG:EF1871 NR:ns ## KEGG: EF1871 # Name: not_defined # Def: thioredoxin family protein # Organism: E.faecalis # Pathway: not_defined # 1 115 47 161 161 224 100.0 7e-58 MVNVFATWCTACVKEIPDLVEVQNEMKSKGVNIVGVVTDPVDDNGENKEAIEKSKLIHEK TKASYPFLMPDKTNFNGRLNGIQAMPETFFVDSNGETKVVLDKAIRICMECIGIG >gi|307679278|gb|GL456449.1| GENE 3 1815 - 1982 139 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229545543|ref|ZP_04434268.1| ## NR: gi|229545543|ref|ZP_04434268.1| hypothetical protein HMPREF0349_0760 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T2] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis HIP11704] hypothetical protein EFNG_00699 [Enterococcus faecalis CH188] hypothetical protein HMPREF9514_01699 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9521_01316 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9515_00116 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9509_02010 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9512_02510 [Enterococcus faecalis TX0635] hypothetical protein HMPREF0349_0760 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T2] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis HIP11704] hypothetical protein EFNG_00699 [Enterococcus faecalis CH188] hypothetical protein HMPREF9509_02010 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9515_00116 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9521_01316 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9514_01699 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9512_02510 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9496_02053 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9500_00904 [Enterococcus faecalis TX0017] hypothetical protein HMPREF9495_01482 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9513_01949 [Enterococcus faecalis TX0645] hypothetical protein HMPREF9511_01905 [Enterococcus faecalis TX0630] # 1 55 3 57 57 85 98.0 1e-15 MDRIKNIINGSTKKDKYKIRDRFKHLFQLRIAIIWSVSDVDDVKMLVQWMQLVME >gi|307679278|gb|GL456449.1| GENE 4 2117 - 3286 569 389 aa, chain + ## HITS:1 COG:SP0599 KEGG:ns NR:ns ## COG: SP0599 COG0577 # Protein_GI_number: 15900507 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 389 1 387 387 247 37.0 3e-65 MKSSNEIEKALYESSNSSISITKKDGKYFNVNQFKDIEKLKEIEEKIIQYDGLAKLKDAK VVSGEQRINREDLSDEFKNVVSLEATNNTKRNILFSSGVFTIKEGKNIEENDKNSIIVHE EFAKQNNLKLGDEVDLELLDIEKSGKIKSHKFKIIGIFSGKKQETYTGLSSDFSENMVFV DYSTSQEILNNSENNEIANKILMYSGSAESTDLALNKLKELKIDESKYFVEKDSNAFEES LESVSGIKYIIKVMTYSIMLVGMVVLSLILILWLRERIYEIGIFLSIGTSKIQIIMQFIF ELIFISIPSIISSLFLGNVLLKVIVDGFINSEDSMISGGSLINNSSFMSNITTLGQSYLI LISIIVLSVVFASSLMLIKKPKEILSKIS >gi|307679278|gb|GL456449.1| GENE 5 3293 - 3952 250 219 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 189 1 199 223 100 33 5e-20 IMDILEIKNVAYSYANSKEKVLSGVNQKFELGKFYAIVGKSGTGKSTLLSLLAGLDKPQT GKILFKNEDIQNKGYSNHRKNNISLVFQNYNLIDYLSPIENIRLVNKSADESILFELGLD KKQIKRNVMKLSGGQQQRVAIARALVSDAPIILADEPTGNLDSVTAGEIINILKTLAKDR NKCVIVVTHSKEVADSADIILELSGKKLKKVNKMNLEVE >gi|307679278|gb|GL456449.1| GENE 6 3952 - 5328 949 458 aa, chain + ## HITS:1 COG:SP0601 KEGG:ns NR:ns ## COG: SP0601 COG0577 # Protein_GI_number: 15900509 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 456 1 457 459 505 60.0 1e-143 MIKNAFAYVTRKSLKSLIIILVILSMSTLSLISLSIKDATDRASKETFANITNSFSMEIN RQVNPGTPRGGGNVKGEDIKKISQTDSIDSYVKRINSVADLVDYDIIETQETLANQSPER AKNFKRTVMLTGVNDSTKETKFVSEAYKLVEGKHLENEDKNKILMHKDLAEKNNLKVGDK IKIKSNLFDADNEKGADETVEVEIKGLFDGHNSGGVSAAQELYENTLITDVHTAAKVYGN TEDTAVYQDATFFVKGDKNLDSVIKDLGKLDINWREYNLIKSSSNYPALQQSISGIYSIS NKLFFGSLIFAGVVVSLLLFLWMNARKKEIAVLLSLGISKLEIFGQFLIEMVFISIPAFV GSYFLAQYTADKLGNNILNKVTGDIAKQIAKQSASSQLGGGAEAEGFNKTLSSLDINVLP KFMIYVVIFMSLVLLVSLIISSFNILRRNPKELLIDNN >gi|307679278|gb|GL456449.1| GENE 7 5459 - 6079 231 206 aa, chain - ## HITS:1 COG:SP1582 KEGG:ns NR:ns ## COG: SP1582 COG3464 # Protein_GI_number: 15901424 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pneumoniae TIGR4 # 1 197 212 402 418 146 41.0 3e-35 MYAPYVSLVKKLFPNAQLIIDRFHIVQHIGRTFLNHRVKETTARLKGTSHSQRGLGKKLK RYWKLLQKEEAKLNYEKRVWRASFKDYLTESEIVDRLLSACPNLRQGYQLYQDILYAVKK RDQSLFEDCLNREVSGLPETYTTTLRTFKKFLPQIQNALHYSYSNGPLECLNNHIKVLKR NAYGFRSFYNFKLRIMIRHGKTFLTK >gi|307679278|gb|GL456449.1| GENE 8 6115 - 6369 91 84 aa, chain - ## HITS:1 COG:FN0275 KEGG:ns NR:ns ## COG: FN0275 COG3464 # Protein_GI_number: 19703620 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 1 83 130 212 317 77 46.0 6e-15 MTEIARQKNISTSSVYRVMKRFYRPLNPFKQTLPKVLCFDEFKSVRHVTSAMSFIMMDGQ SHALLDIVENRRLPYLEHYFLGFH >gi|307679278|gb|GL456449.1| GENE 9 6501 - 6611 155 36 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|69243909|ref|ZP_00602487.1| ## NR: gi|69243909|ref|ZP_00602487.1| Transposase, IS204/IS1001/IS1096/IS1165 [Enterococcus faecium DO] Transposase, IS204/IS1001/IS1096/IS1165 [Enterococcus faecium DO] # 1 31 1 31 424 62 87.0 8e-09 MDNHTRKLLGLTDKHLFFDEDWLIEKEYMSIALIWS >gi|307679278|gb|GL456449.1| GENE 10 6883 - 7536 587 217 aa, chain + ## HITS:1 COG:SP0603 KEGG:ns NR:ns ## COG: SP0603 COG0745 # Protein_GI_number: 15900511 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Streptococcus pneumoniae TIGR4 # 1 217 1 218 218 263 62.0 3e-70 MKILTVEDDNMIREGISEYLSEFGYTVIQAKDGREALSKFNSDINLVILDIQIPFINGLE VLKEIRKKSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLPVLKARIDSLIKKNYGH LEKFEYKDLSVNFNSYTAKINGEEIDVNAKELEVLKCLLDNNGQVLTRMQIIDYVWKDSE ETPYDRVIDVYIKELRKKLQLDCITTIRNVGYKLERK >gi|307679278|gb|GL456449.1| GENE 11 7674 - 8852 624 392 aa, chain + ## HITS:1 COG:SP0604 KEGG:ns NR:ns ## COG: SP0604 COG0642 # Protein_GI_number: 15900512 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Streptococcus pneumoniae TIGR4 # 2 388 49 434 442 287 41.0 2e-77 MANEISSNMNGKEIKYIEQTLEFYSKSSEIKVFIKEKNNKNEIQIKDNINVNLESDSNSL IIEEREIKLNDGKKTNLQFVSTADMQKDAKDLSLKFLPYSLLISILFSAIISLIYAKSIK NNIQEIKIVTDKMMKLDKKMSLKVSSNDEVGELKQQINDLYSTLLRTIDDLEFKNKEILK LEKLKYDFFKGASHELKTPLASLKIILENMKYNIGKYKERDIYINECIEIVDSLTKNISQ ILSVHSIENLNNDEEYLKINDTLEDILKKYEILANQKKITVNNYILDENVYIGKTALKII LSNLISNAVKYTDVNGVINIGIVNDWLYIENSYGNNKISNMDKIFDVKFDLNKENSNGLG LYIVSNILNNYNIEYKVLQDEEFFIFKIKIFS >gi|307679278|gb|GL456449.1| GENE 12 9177 - 10130 553 317 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 316 73 389 391 322 51.0 5e-88 MNLTIPRDRNGELSQQTLPAYKRTNDSLETTIIQLFQKGITMAEISKLIEKMYGHHYTPQ TISNMSKLVAEDVLAFKERTLEANYSVIFMDATHIPVKRQTVSKEAVYITIGIRLDGTKE VLGFTIAPTESAYIWKEVLQDLRKRGLEEVLLVVTDGLSGIEESIHSVYPNAQFQQCCVH VSRNIAHKVRVRDRKEICEDFKLVYQANSKEEALDHIDFMIRKWKKQYPRVVNLLLNPAL LTFYNFPHAIRRTIYSTNLIEGFNKQLKRYTRRKEQFPNEESLERFFISQFNQYNQKFLG RIHKGFKEIQDTLESMI >gi|307679278|gb|GL456449.1| GENE 13 10200 - 10346 278 48 aa, chain - ## HITS:1 COG:no KEGG:EF1874 NR:ns ## KEGG: EF1874 # Name: not_defined # Def: IS256 family transposase # Organism: E.faecalis # Pathway: not_defined # 1 48 1 48 396 70 70.0 2e-11 MTKFTIEIMQTLLNKGDLDELFQDHLERAINSLLQAELTAFLDYEKYD >gi|307679278|gb|GL456449.1| GENE 14 10600 - 11445 586 281 aa, chain + ## HITS:1 COG:RSp0668 KEGG:ns NR:ns ## COG: RSp0668 COG5495 # Protein_GI_number: 17548889 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Ralstonia solanacearum # 1 262 11 272 294 105 25.0 9e-23 MNVGFIGAGKVGCSFGKYFQEHKIQVTGFYSKSEDSSLAASNFTSSKQYLNLRELVDEND TIFITTPDGQIQEVWQEIKNYQIKNKLICHCSGAISSDIFSNIQDYGAYGYSVHPMFSIS DKYNSYKKLKKSFITIEGDEKYAKFLCDFFKKLGNSTVIVSKENKSLYHAASVVSSNLVL GLINTSVTYLIQCGFTEKMAIEALYPLIEFNIRNIKEKGIIESLTGPVERCDISTIKGHC EVLSDEDRALYMLLSKNVLEIAMLKNINRDYSELEKYLGES >gi|307679278|gb|GL456449.1| GENE 15 11457 - 12284 705 275 aa, chain + ## HITS:1 COG:CAC2914 KEGG:ns NR:ns ## COG: CAC2914 COG0413 # Protein_GI_number: 15896167 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate hydroxymethyltransferase # Organism: Clostridium acetobutylicum # 1 274 1 274 276 383 68.0 1e-106 MKNTAVTFKESKLRNEKLTMLTAYDYSTAKIIDEAGINGILVGDSLGMVCLGHEDTLSVT MEDMIHHTRAVTRGAKNTLVVADMPFMSYQTSVYDSVVNAGRLIKEGRAQVVKLEGGIEV CDKIEAIVKASIPVMAHIGLTPQSVNAFGGFKVQGKDKEAAKELIRAAKAVEKAGAFAVV LECVPTKLAELISKEISIPTIGIGAGAGCDGQILVYQDMLGMYSDFTPKFVKKYANLSEE MNKAFTKYIEEVKDGVFPGPEHGFKISDDVLEKLY >gi|307679278|gb|GL456449.1| GENE 16 12299 - 13147 444 282 aa, chain + ## HITS:1 COG:CAC2915 KEGG:ns NR:ns ## COG: CAC2915 COG0414 # Protein_GI_number: 15896168 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate synthetase # Organism: Clostridium acetobutylicum # 1 281 1 281 281 383 67.0 1e-106 MVIFKTVNDVRSQVKEWKKQGLKVGLVPTMGYLHEGHESLIRKASKENDKVVVSIFVNPT QFGKNEDLGSYPRDLERDIEVCTRGRATAIFNPEVEEMYCDNASTFVNITGLTEGLCGAS RPIHFRGVCTVVSKLFNIIPADRAYFGEKDAQQLAVIKRMVRDLNIDIDVVGCPIIREED GLAKSSRNTYLSLEERSSATILNKSLTLAKEALNNGERDSLKIIEIISKNINTYNLAKID YVEVVDSLSLQRVNYIEKSVLVAIAVFIGKTRLIDNFTFELQ >gi|307679278|gb|GL456449.1| GENE 17 13160 - 13555 336 131 aa, chain + ## HITS:1 COG:CAC2916 KEGG:ns NR:ns ## COG: CAC2916 COG0853 # Protein_GI_number: 15896169 # Func_class: H Coenzyme transport and metabolism # Function: Aspartate 1-decarboxylase # Organism: Clostridium acetobutylicum # 1 126 1 126 127 167 62.0 7e-42 MKVTMLKGKIHRAKVEQAELDYVGSITVDMDLLEAAGIYEYEKVQIVDVNNGNRFETYTI AGERGTGMICLNGAAARCVSTGDKIILMAYCELNENEVKDHRPKVVFVDDNNKVERVTSY EKHGRLSDIIL >gi|307679278|gb|GL456449.1| GENE 18 13708 - 13821 63 37 aa, chain - ## HITS:1 COG:pli0076 KEGG:ns NR:ns ## COG: pli0076 COG2801 # Protein_GI_number: 18450358 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Listeria innocua # 1 35 215 249 269 66 82.0 1e-11 MKKEELNRRSFHSIEEVRLACFAYIEGFYNTKRPHGT >gi|307679278|gb|GL456449.1| GENE 19 14103 - 14939 361 278 aa, chain - ## HITS:1 COG:BH0335 KEGG:ns NR:ns ## COG: BH0335 COG2801 # Protein_GI_number: 15612898 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Bacillus halodurans # 1 256 1 257 261 280 52.0 3e-75 MCRILGLSRQSYYYQSKPKKDESELEEVVAEEFILSRKAYGSRKIKKALSKRGIQISRRK ISRIMKNRGLKSSYTVAYFKVHHSTCNEAKTTNVLNRKFLRDNPLEAIVTDLTYVRVGKK WNYVCFILDLFNREILGYSCGEHKDAVLVKKAFSRIRQPLTEVEIFHTDRGKEFDNQAID ELLTTFDINRSLSHKGCPFDNAVAESTYKSLKVEFVYQYTFETLQQLDLELFDYVNWWNH LRLHGTLGYETPVGYRNQRLAQRILDNELGCANASEAV >gi|307679278|gb|GL456449.1| GENE 20 14975 - 15304 70 109 aa, chain - ## HITS:1 COG:BH0334 KEGG:ns NR:ns ## COG: BH0334 COG2963 # Protein_GI_number: 15612897 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Bacillus halodurans # 14 107 1 94 94 114 68.0 4e-26 MCRLEENIPGGIFISKRTRRTFSQEFKQQIVNIYLAGKPRVEIIREYELTASAFDKWVKQ SKTSGSFKEKDNLTPEQKELLELRKRNQQLEMENDILKQAALIFGRRDK >gi|307679278|gb|GL456449.1| GENE 21 15574 - 15663 164 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNDFTTEILKTLANKGDLNELLVALIIYK >gi|307679278|gb|GL456449.1| GENE 22 15870 - 16130 127 86 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227519043|ref|ZP_03949092.1| ## NR: gi|227519043|ref|ZP_03949092.1| hypothetical protein HMPREF0348_2026 [Enterococcus faecalis TX0104] hypothetical protein HMPREF0349_0775 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis Merz96] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecium 1,231,408] hypothetical protein EfaeD_14121 [Enterococcus faecium DO] conserved hypothetical protein [Enterococcus faecalis R712] conserved hypothetical protein [Enterococcus faecalis S613] hypothetical protein HMPREF9514_01719 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9521_01334 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9515_00133 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9509_02027 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9512_01352 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9492_02143 [Enterococcus faecalis DAPTO 512] hypothetical protein HMPREF9493_01514 [Enterococcus faecalis DAPTO 516] hypothetical protein HMPREF0348_2026 [Enterococcus faecalis TX0104] hypothetical protein HMPREF0349_0775 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis Merz96] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecium 1,231,408] conserved hypothetical protein [Enterococcus faecalis R712] conserved hypothetical protein [Enterococcus faecalis S613] hypothetical protein HMPREF9509_02027 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9515_00133 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9521_01334 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9514_01719 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9492_02143 [Enterococcus faecalis DAPTO 512] hypothetical protein HMPREF9512_01352 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9493_01514 [Enterococcus faecalis DAPTO 516] hypothetical protein HMPREF9496_01508 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9500_02042 [Enterococcus faecalis TX0017] hypothetical protein HMPREF9495_01303 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9513_00595 [Enterococcus faecalis TX0645] hypothetical protein HMPREF9507_00266 [Enterococcus faecalis TX0309B] hypothetical protein HMPREF9511_01910 [Enterococcus faecalis TX0630] hypothetical protein HMPREF9506_02271 [Enterococcus faecalis TX0309A] # 1 86 1 86 86 84 100.0 3e-15 MKKIDLINMIGMLIGILVNIVIFTDWLGVLFSNLIPILIIGICGIILSILELFESRNTMN RIFACIILIVNLLPMVYFTFLYFALG >gi|307679278|gb|GL456449.1| GENE 23 16404 - 17696 941 430 aa, chain + ## HITS:1 COG:RSc0252 KEGG:ns NR:ns ## COG: RSc0252 COG3328 # Protein_GI_number: 17544971 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Ralstonia solanacearum # 24 399 31 405 416 279 38.0 8e-75 MARKKRNPDAEKLAESILNAYQPESVDDMQDALKDVFGPLFEKMLQGELNNHLGYDAHSK EPKEHDNRRNGYGTKTLKTSFGEVAIDVPRDREASFEPELIPKRKRDVSDIEGKVLSMYA RGMSQRDIAATVEAIYGFDISHEMISDITDAVLPELEEWQARPLAKCYAFLFVDCMYVTL RENYEAKEYAVYTILGYDLKGNKEILGLWLNQTESKNRWIQVFDELKARGVEDVFFISMD GVSGLEEGAKAIFPSVIVQRCIVHLVRNALRYIPSKDYKEVCRDMKKFYGASSLNAAHAA FGSFQNRWSHYSGAVDVWKRNFAHVEQLFDYGSAIRKIMYTTNAVESVHSSFRKVTKKGA FSNENALLKLLYLRTKELHAKWSGGRIQNWAMVLKQLMINETFSSRMKSMRFTFRNNGRF IQLCVRSKFI >gi|307679278|gb|GL456449.1| GENE 24 17790 - 17954 95 54 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227519041|ref|ZP_03949090.1| ## NR: gi|227519041|ref|ZP_03949090.1| hypothetical protein HMPREF0348_2024 [Enterococcus faecalis TX0104] hypothetical protein HMPREF0346_0829 [Enterococcus faecalis HH22] hypothetical protein HMPREF0349_0777 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis Merz96] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis CH188] transcriptional regulator, AraC family [Enterococcus faecalis R712] transcriptional regulator, AraC family [Enterococcus faecalis S613] msm operon regulatory protein [Enterococcus faecium E1636] hypothetical protein HMPREF9514_01721 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9521_01336 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9515_00135 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9509_02029 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9512_01350 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9492_02141 [Enterococcus faecalis DAPTO 512] hypothetical protein HMPREF9493_01512 [Enterococcus faecalis DAPTO 516] hypothetical protein HMPREF0348_2024 [Enterococcus faecalis TX0104] hypothetical protein HMPREF0346_0829 [Enterococcus faecalis HH22] hypothetical protein HMPREF0349_0777 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis Merz96] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis CH188] transcriptional regulator, AraC family [Enterococcus faecalis R712] transcriptional regulator, AraC family [Enterococcus faecalis S613] msm operon regulatory protein [Enterococcus faecium E1636] hypothetical protein HMPREF9509_02029 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9515_00135 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9521_01336 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9514_01721 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9492_02141 [Enterococcus faecalis DAPTO 512] hypothetical protein HMPREF9512_01350 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9493_01512 [Enterococcus faecalis DAPTO 516] hypothetical protein HMPREF9496_01510 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9500_02044 [Enterococcus faecalis TX0017] hypothetical protein HMPREF9495_01300 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9513_00593 [Enterococcus faecalis TX0645] hypothetical protein HMPREF9507_00268 [Enterococcus faecalis TX0309B] hypothetical protein HMPREF9511_01912 [Enterococcus faecalis TX0630] hypothetical protein HMPREF9506_02273 [Enterococcus faecalis TX0309A] hypothetical protein EF62_2200 [Enterococcus faecalis 62] # 1 54 1 54 54 82 100.0 1e-14 MKYYTDKKEPWTLIWLGIQGDKTSEFLKETTLLNTHTVSLTKNINKKHTIENSM >gi|307679278|gb|GL456449.1| GENE 25 17951 - 18175 140 74 aa, chain - ## HITS:1 COG:no KEGG:EF1853 NR:ns ## KEGG: EF1853 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 74 1 74 74 130 98.0 1e-29 MEDFWYHNKSVSAPISLSQCGYESYHPNSSIRNYIVQQKWIFHYVLSGKGFLEVEAQHFE LIEHDIFFFFKLKK >gi|307679278|gb|GL456449.1| GENE 26 18313 - 19575 861 420 aa, chain + ## HITS:1 COG:lin2856 KEGG:ns NR:ns ## COG: lin2856 COG1455 # Protein_GI_number: 16801916 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Listeria innocua # 9 392 8 388 454 300 42.0 4e-81 MSEKIMNTIQNKVLPIATKIGNQRFLVALRDSFMGTMPVIMTGSVAILLNAFLVDFPMQF GYEKITDYFQWLVDINNLISKGSISIVSLLFIYCLGVNIAKIYKTDTLSSGLVALSSFII SISNSMTSTYNLSNNNNIDLTTLFTDVEGITVTGNSLNVTISGLLPGTQINSNGYFTAII IGFLSSIIFCKLMNKNWTIKLPDTVPPAIAKPFLSIIPALVSLYIIAILTFLLNRITGKI LTDVIYEILQRPMLGLSQSFFVVILVAFLVQFFWFFGIHGGNVMAPIMEGVFGVALLVNL EAYQNNETIPYVWTSVSYGSFVWYATLGLLIAIFWVSKNSHYKEVAKLGIMPVLFNIGEP VMYGLPTVLNPILFIPFLLCPAVMSSVAYLVTDFKLGFSSNTKCNLGNTTGLIWILFYRI >gi|307679278|gb|GL456449.1| GENE 27 19747 - 21582 1553 611 aa, chain + ## HITS:1 COG:SP0060 KEGG:ns NR:ns ## COG: SP0060 COG1874 # Protein_GI_number: 15900005 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase # Organism: Streptococcus pneumoniae TIGR4 # 1 593 1 590 595 634 52.0 0 MQTFEIKEEFLVDGKPTKLISGAIHYFRMTPAQWEDSLYNLKALGANTIETYIPWNLHEP VEGVYDFEGMKDIVAFVSLAQELGLMVILRPSVYICAEWEFGGLPAWLLKEHVRLRSTDP RFIAKVRTYFSVLLPKLVPLQVTHGGPVIMMQVENEYGSYGMEKEYLRQTKQVMEEFGID VPLFTSDGAWEEVLDVGTLIEEDVFVTGNFGSHSKENATVMKAFMAKHDKKWPIMCMEYW DGWFNRWGEPIIKRDGQDLANEVKDMLALGSLNLYMFHGGTNFGFYNGCSARGVLDLPQV TSYDYDALLTEAGEPTEKYFHVQRAIKEVCPEVWQAEPRRKTFGSLGTFPVQNSVSLLAV KDQMMTAQETMYPITMEEAESGYGYMLYSVNLKNYHHENKLKVVEASDRLHLFADGSLQT IQYQENLGEEVMIKGTPEKEWIELDVLVENLGRVNYGFKLNGPTQVKGIRGGIMQDIHFH QGYRQYALTLSADQLKKIDYTAGKNPAQPSFYQAEFTLTDLADTFIDCRSYGKGVVIVNG INLGRYWQRGPIHSLYCPKEFLKKGTNEIVIFETEGIEINELIFCGQPIVKKLLTNDFSE IGSNIHNHIDS >gi|307679278|gb|GL456449.1| GENE 28 22566 - 23744 700 392 aa, chain + ## HITS:1 COG:SA1835 KEGG:ns NR:ns ## COG: SA1835 COG0582 # Protein_GI_number: 15927603 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Staphylococcus aureus N315 # 27 390 30 381 390 109 28.0 8e-24 MENMSRFKKHITATGKITWYFQAFRTTRRGFNSKREAQLAYLEMEKQHRNKQKRLASNDK FSVVSQKWFEYYRSLNEQKVATYDKREEQVKILNRWIGGKKLSSLSSEELQKFLFILKEK GIDGVNVGYAKNSLQSLVQVLNMVFNYCKKKNLINENPMKFVKMPKYQLSLKDLKESVNS LEDKFLTVDELRAFLNYGIVYEELPMSVLFHVLFYTGCCVSEALALQPQDIDFERNEILF YKQTAVKGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRNSNFVVDETYL FVYLDPGKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMASLVAEYCSWDVLKDR LGHTDSTTSKIYRHLTSTEKLKPLTAFNSLEG >gi|307679278|gb|GL456449.1| GENE 29 24470 - 24637 114 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229545567|ref|ZP_04434292.1| ## NR: gi|229545567|ref|ZP_04434292.1| hypothetical protein HMPREF0349_0784 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis HIP11704] hypothetical protein HMPREF9514_01730 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9521_01345 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9515_00144 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9509_02036 [Enterococcus faecalis TX0411] hypothetical protein HMPREF0349_0784 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis HIP11704] hypothetical protein HMPREF9509_02036 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9515_00144 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9521_01345 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9514_01730 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9496_01517 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9500_02053 [Enterococcus faecalis TX0017] hypothetical protein HMPREF9495_01291 [Enterococcus faecalis TX2141] # 1 55 1 55 55 84 100.0 3e-15 MFAIVLRVVILLITVKIVDYFANTPEVQIQRKLPEFEKVSPYDPRDNSFLIQIIL >gi|307679278|gb|GL456449.1| GENE 30 24803 - 24886 130 27 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEATLPMVQARRKELSILMNNSYSNFM >gi|307679278|gb|GL456449.1| GENE 31 24902 - 25210 219 102 aa, chain + ## HITS:1 COG:no KEGG:EF1844 NR:ns ## KEGG: EF1844 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 102 1 102 138 143 81.0 3e-33 MKKIGYFSCIIFFMFLVGCSNNKKENGNLLNASSFPLILTTIIEKEEDLTKGSIFFNKDK TMTLEKEYLVNPNNEDTKKQVEQKKRYIKILKYKKIKRAMKL >gi|307679278|gb|GL456449.1| GENE 32 25491 - 26396 731 301 aa, chain - ## HITS:1 COG:CAC0090 KEGG:ns NR:ns ## COG: CAC0090 COG0726 # Protein_GI_number: 15893386 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Clostridium acetobutylicum # 1 300 1 292 293 149 33.0 8e-36 MRHKKRKFKINGYVLFSALILIVLVFIQTFLLTQPKITSKNDDTTQTSTKNSTAKKDSPT KLEKESTHMTISSKKYAYSADKIRKYITGEEPYKGEKLVFLTFDDGVNNQITPQILDALK KYNVHATFFLVGNTLTSENQKIVKREVAEGHSIGFHSSTHDYATLYPNGIVNTEEIQAEI ATMENSLKKILGETFQTTLWRYPGGHMSWGGTEKSDELFKQLGIHWIDWNAMVGDAEPLD RQPTTVAEMLAFHQHSLEVYPDYNIRVVLMHDSVDKELTKQALPQLIEFYQANGYQFGVL Y >gi|307679278|gb|GL456449.1| GENE 33 26620 - 27141 359 173 aa, chain + ## HITS:1 COG:L132126 KEGG:ns NR:ns ## COG: L132126 COG1713 # Protein_GI_number: 15673861 # Func_class: H Coenzyme transport and metabolism # Function: Predicted HD superfamily hydrolase involved in NAD metabolism # Organism: Lactococcus lactis # 5 145 10 150 197 130 45.0 8e-31 MDHQQVLKNEIKQYLVSKNCEKTYYHCMEVGEYAYQLGEKYLTSPEKVSIAGYLHDISAI YPNNQRISVAQKYGIELNEAEMAFPMIIHQKISKSIAKMDFGIEDNEILSAIECHTTLKK NYSDIDLVLFVADKIKWDQEGKPPYLFYIAYGFVYQLHGANDFKCFFSTDLSK >gi|307679278|gb|GL456449.1| GENE 34 27071 - 28141 746 356 aa, chain + ## HITS:1 COG:SP0527 KEGG:ns NR:ns ## COG: SP0527 COG2972 # Protein_GI_number: 15900441 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Streptococcus pneumoniae TIGR4 # 95 332 187 430 446 91 28.0 3e-18 MVSFINYTEQTILSVFFQQIYQNKLLWIASNVILLLINIWIALKIPNSVFLRLNRVLENS RIFFGCLLLLLILLLLFVFLISPEISPDFMRGFVTVNSSKLELLISVGLFLILIGLVIEA YLEEQRINTQLLNNLTIYTEKIESINEELAMFRHDYKNLLYSLQIAISYEDILEIKRIYE ETIAPTKKIIDNEEFELMKLNRLKNMELKALISMKINTAKQAKLKVIVDVPEVFILDTSI DLVVVIRLLAILLDNAIENSAKSELKMFAISIFNKNETQEFVITNSVQAEFDFRVMKKTK FSSKSNPEEHGWGLLYVKEIVDFSDQFDLQTSFNEGSVTQHLIIEKNHNSKKVVNE >gi|307679278|gb|GL456449.1| GENE 35 28376 - 29908 1741 510 aa, chain + ## HITS:1 COG:BS_nprE KEGG:ns NR:ns ## COG: BS_nprE COG3227 # Protein_GI_number: 16078534 # Func_class: E Amino acid transport and metabolism # Function: Zinc metalloprotease (elastase) # Organism: Bacillus subtilis # 57 491 75 521 521 178 31.0 3e-44 MMKGNKILYILGTGIFVGSSCLFSSLFVAAEEQVYSESEVSTVLSKLEKEAISEAAAEQY TVVDRKEDAWGMKHLKLEKQTEGVTVDSDNVIIHLDKNGAVTSVTGNPVDQVVKIQSVDA IGEEGVKKIIASDNLENKDLVFLAIDKRVNNEGQLFYKVRVTSSPTGDPVSLVYKVNATD GTIMEKQDLTEHVGSEVTLKNSFQVTFNVPVEKSNTGIALHGTDNTGVYHAVVDGKNNYS IIQAPSLATLNQNAVDAYTHGKFVKTYYEDHFQRHSIDDRGMPILSVVDEQHPDAYDNAF WDGKAMRYGETSTPTGKTYASSLDVVGHEMTHGVTEHTAGLEYLGQSGALNESYSDLMGY IISGASNPEIGADTQSVDRKTGIRNLQTPSKHGQPETMAQYDDRARYKGTPYYDQGGVHY NSGIINRIGYTIIQNLGIEKAQTIFYSSLVNYLTPKAQFSDARDAMLAAAKVQYGDEAAS VVSAAFNSAGIGAKEDIQVNQPSESVLVNE >gi|307679278|gb|GL456449.1| GENE 36 29957 - 30811 748 284 aa, chain + ## HITS:1 COG:SA0901 KEGG:ns NR:ns ## COG: SA0901 COG3591 # Protein_GI_number: 15926635 # Func_class: E Amino acid transport and metabolism # Function: V8-like Glu-specific endopeptidase # Organism: Staphylococcus aureus N315 # 43 272 64 280 342 79 27.0 8e-15 MKKFSIRKISAGFLFLILVTLIAGFSLSANAEEYIVPAESHSRQKRSLLDPEDRRQEVAD TTEAPFASIGRIISPASKPGYISLGTGFVVGTNTIVTNNHVAESFKNAKVLNPNAKDDAW FYPGRDGSATPFGKFKVIDVAFSPNADIAVVTVGKQNDRPDGPELGEILTPFVLKKFESS DTHVTISGYPGEKNHTQWSHENDLFTSNFTDLENPLLFYDIDTTGGQSGSPIYNAQFEVV GVHSNGGIKQTGNHGQRLNEVNYNFIVNRVNEEENKRLSAVPAA >gi|307679278|gb|GL456449.1| GENE 37 30959 - 31789 605 276 aa, chain - ## HITS:1 COG:PH1607 KEGG:ns NR:ns ## COG: PH1607 COG1235 # Protein_GI_number: 14591382 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Pyrococcus horikoshii # 1 272 1 245 249 63 26.0 4e-10 MKINYLGTGAAERIPGIFCNCKLCKYAREKKGREIRTQTQLIIDDVLLIDFPGDSYLHLL QYDLCFADFDSLLISHWHSDHFYGEDLAYRMSGYALDIPNRLTVYGNEAVKTFYQRAFDL EGRQDDTRLQYQVIQPYKCFTIANYTIYPLPAQHGNFSEDCFIFVIDDGKDAFLSTHDTG YFTSEMFEYLEKSHLLLSIVSLDCTSQTNETGNSHMNWEENLKLIAELKERKLVTDKTIY VANHFSHNGGLSYAEMAALSQKHEIITSYDGLEILT >gi|307679278|gb|GL456449.1| GENE 38 32181 - 33035 682 284 aa, chain + ## HITS:1 COG:BS_yclA KEGG:ns NR:ns ## COG: BS_yclA COG0583 # Protein_GI_number: 16077430 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 1 227 1 238 290 71 26.0 2e-12 MTIEKLEYFYTIAKYNSISKAASELHVSKSTLSASLKDLESELGHLLFDRNGNSLTLNSY GDKIVQSVYIILNEAKKMKLNLHEMIENPVMRLGFGNTSLMYKVTENEDQLNRFWECYHG SSFELLNKLENHELDFVITSADVNSPVLKKEQLIELKMYLCVSREIKQEIEEEGFTCLTN YPFLFLPHHLDHLEATKSVLEMLQLTSPLVCCYDTLMLTRLIEKSKGVYAVISLRKEQLQ EIDSKLFFLPIERKQKFYLYRNVSSSVFVQPGQIKATLQKLLET >gi|307679278|gb|GL456449.1| GENE 39 33417 - 34805 1095 462 aa, chain + ## HITS:1 COG:mll2542 KEGG:ns NR:ns ## COG: mll2542 COG0477 # Protein_GI_number: 13472297 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Mesorhizobium loti # 14 421 14 421 505 211 32.0 3e-54 MIDRKKVILYTCCMSLFVVTMDVTVVNVALPSIQSDFHTNLSTLQWVTDGYTLMVASLLL LSGSTADRIGRKRVLQLGLACFGLASFLCGISQTPGQLIAFRMLQGIGGSMLNPVAMSII TQVFTEKLERAKAIGLWGSVTGISLGMGPIIGGLIVSYFSWRYVFFVNVPIIAAAIILTQ KFVPESKVEKTAKNDFVGQALMILFLFSSIYSIIGLPRKGLFAPDILSTGIIGCLAIVIF FIYEYNIDNPLINPRFFLSIPFTSASFLAIFGFIIYNGYLFLNTLYLQEMRGFSPLEAGL STIPLAFVSFLVAPRAGEMVGRIGTKRPIMLCGISMLAVSFLQLFVTKTTPMIILFIIYI FLGIGFGMLNSPITITAIEGMPLSQSGTAAAIAVTCKQIGNSLGVALPSLLITKPITSSL TRTPFTNVWLLFGCCAIAIIFLSYLSNSPLAKKSLRRVRFYF >gi|307679278|gb|GL456449.1| GENE 40 34847 - 36907 1622 686 aa, chain + ## HITS:1 COG:lin0927 KEGG:ns NR:ns ## COG: lin0927 COG1368 # Protein_GI_number: 16799998 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Listeria innocua # 4 647 12 643 653 548 45.0 1e-155 MKKINNRLGLFLFFVLLFWAKTILAYYLDFSLGVKGSLQREILWFNPVATTLLLFGFSLY FKKHKTFMLSLTLLNVLNTLILYLNIIFYREFTDFITIQSVFGFSKVSEGISGDLLALMR VHDVFYWLDTLVLLVLVFYSFKQRRNHQVFVTKPINRRLAISISCLSVLLFSVNLFLSET DRPQLLQRIFDRNYIVKYLGLDAFTAIDGVKTAMSNEVRAEASSNELPEIMKFTKQNNLP LNPQYAGIAKGKNVFVIHLESFQQFLINMKVQGQEVTPFLNQLYQNKATISFDNFFHEVG QGKTSDAENMLETGTFGLPQGSLFTQLGSDNTFEAAPAVLGQKGYTTAVFHGNVGSFWNR DHVYKNLGYQYFFDRSYFSKDDKMLGYGILDKQLLRESASELEHLQQPFYAKFLTVTNHT PYYTDDQNFPFPKLNTGNSIVDDYVRTAHYLDQSLEQFFHYLQTTSLYNHSIFVIYGDHF GISDANNKDLCKAFNRDPKTWTNYDNAQLQRVPLMFYMPGYTQGKIMHEYGGEIDVLPTL YHLLGVDDKNYIHFGTDLLSPQYKQVVPFRNGDFVTPRFSYLGGEIYNNQGKKLDQVPAD LKAEVTKDNDWVKKSLSLSDKLNQENLLRFYKPQGFQEVQPKDYNYDVAFEKNKVLEVEK QKNAQSTSLFSQNGNQTTVQNYPTTP >gi|307679278|gb|GL456449.1| GENE 41 36834 - 37103 112 89 aa, chain + ## HITS:1 COG:no KEGG:EF1812 NR:ns ## KEGG: EF1812 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 11 89 1 79 79 124 93.0 2e-27 MHNQPACLVKMAIKRQSKIIRLRHRSFKKDNFWKGKRIIYEVKEVRTESFIFEAIGSVST IYQVLSLEQKSKVIFVPGFFALLLSKKSV >gi|307679278|gb|GL456449.1| GENE 42 37408 - 38253 767 281 aa, chain + ## HITS:1 COG:BS_gspA KEGG:ns NR:ns ## COG: BS_gspA COG1442 # Protein_GI_number: 16080894 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Bacillus subtilis # 1 272 1 271 286 216 41.0 5e-56 MRKNQKIVPIVTASDENYAPYLNVMMTTVLENCHSERSVHFYVIDDGLSLSSKKALQETV SSNSQNATVEFLTADKEVYQNFLVSDHITTTAYLRISLPSLLQKYSYKKVLYLDADTLVL DDIVQLYDTPLVNQTIGAVIDPGQAYALKRLGIHSSDYYFNSGVMIIDIDRWNEKAITQK TIQYLEENGDRIVYHDQDALNAVLYEDWLALEPRWNMQTSLVFNRHEAPNEAYQKLYTAG NQEPAIIHFTGHDKPWNTLENHPYSALYLNKLKKVGARNGK >gi|307679278|gb|GL456449.1| GENE 43 38243 - 39145 770 300 aa, chain + ## HITS:1 COG:BS_gspA KEGG:ns NR:ns ## COG: BS_gspA COG1442 # Protein_GI_number: 16080894 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Bacillus subtilis # 1 291 1 275 286 235 41.0 1e-61 MENRKELAIVSCCNTNFVPHLAAMFVSILENSPSAAAVHFYVIDDNINFESKQLLYFTIK HTQINAELTFLKINPHFFKNVVTSERIPKTAYYRIAIPELFRGSQIERLLYMDCDMIALD DVAKLWTVDLGENIIAAVEDAGFHQRLEKMAIPAESMCYFNSGLLLIDVKKWLNLDVTTK VLRFIEENPDKLRFHDQDALNAVLHDRWTLLHPKWNAQGYILSKAKKHPTIYGEKQYEET RRAPSIIHFTGHVKPWTKEFQWYTKRYYDQYANRTAFRCVNTFNQYLSYTKISRRIEYAQ >gi|307679278|gb|GL456449.1| GENE 44 39078 - 39209 88 43 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315036698|gb|EFT48630.1| ## NR: gi|315036698|gb|EFT48630.1| hypothetical protein HMPREF9501_00532 [Enterococcus faecalis TX0027] # 1 43 48 90 90 70 90.0 5e-11 MSTHSINIYLIRKLAEGLNMLNNEYFHGFRKISYLLVVAKTKQ >gi|307679278|gb|GL456449.1| GENE 45 39531 - 40262 652 243 aa, chain + ## HITS:1 COG:SPy0715 KEGG:ns NR:ns ## COG: SPy0715 COG2188 # Protein_GI_number: 15674773 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 6 242 3 239 240 228 52.0 6e-60 MENAFKNKALYHQLVDLLQERIETCMIPHDKLPSERELTAQYGVSRTTVRLALQELENRG SIYRRHGKGTFVSDIKKEAADLAGAYSFTEQMKGLGRKPHTRILSFEKLEADKFICQHLN LSLGEVVFKLSRLRIADNEPLMVEDTYLPVKFFLSLTDQLLRSKPLYDLFSEDFKQTVRL ADEELYASIASKEDAKLLMIPEGAPVLHLARQTYNMKNEIIEFTLSVARADQFHYQIRHI RNS >gi|307679278|gb|GL456449.1| GENE 46 40274 - 41446 1402 390 aa, chain + ## HITS:1 COG:SPy0716 KEGG:ns NR:ns ## COG: SPy0716 COG2222 # Protein_GI_number: 15674774 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted phosphosugar isomerases # Organism: Streptococcus pyogenes M1 GAS # 1 389 1 389 399 444 56.0 1e-124 MFTAEKEELEQLGAEITTREIRQQPELWQETVTLYHENQTALENFLKEVQAKAQGKRTRV IFTGAGTSQYVGDTVVPYLRAHGDTQAFSFESIGTTDIVAKPEDYLIKDEPTLLVSFARS GNSPESLAAVEVANQVVETIHHLAITCAEEGQLAQISQKEENSFLFLMPTRSNDGGFAMT GSFSCMTLGTLLLFDQTAFEQKQDYVTALIKLGEEVLSREEELNEIVNLDFERIVYIGSG SLAGLTREAQLKILELTAGKVATIFDSSMGFRHGPKSFINEKTIMFGFVNNTPYTRDYDL DILEEVHGDEIAAGVFAIAQPGKRNFSGSTIEYSAETALLPDGYLALADIMVAQTVALLT SIKVGNKPDTPSPTGTVNRVVKGVTIYDYK >gi|307679278|gb|GL456449.1| GENE 47 41469 - 42464 1224 331 aa, chain + ## HITS:1 COG:SA1994 KEGG:ns NR:ns ## COG: SA1994 COG3684 # Protein_GI_number: 15927772 # Func_class: G Carbohydrate transport and metabolism # Function: Tagatose-1,6-bisphosphate aldolase # Organism: Staphylococcus aureus N315 # 8 325 7 325 326 399 63.0 1e-111 MLTLTAGKKAAMDRLSTQEGIISALAIDQRGALKKMIKALDVEPTDAQIETFKELVSKEL TPYASAILLDPEYGLPAAKARDTEAGLLLAYEKTGYDATTPGRLPDLLADWSVLRLKEEG ADAIKFLLYYDVDEDSEINHQKHVFIERLGSECAEEDLPFYLELVSYDAQIADATSLEYA KVKPHKVNEMMKEFSKPQYKVDVLKVEVPVNMNFVEGFAPAETAYTKEEAANYFLEQSQA TDLPFIFLSAGVSTELFQETLRFAKEAGSTFNGVLCGRATWKNGVKPFVEAGETAACDWL KTEGRENIESLNEVIAATASSWHAKVQVNEG >gi|307679278|gb|GL456449.1| GENE 48 42480 - 43421 852 313 aa, chain + ## HITS:1 COG:SA1995 KEGG:ns NR:ns ## COG: SA1995 COG1105 # Protein_GI_number: 15927773 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Staphylococcus aureus N315 # 1 311 1 310 310 303 50.0 3e-82 MIVTVTMNPSIDISYLLDHLKLDTVNRTSQVTKTPGGKGLNVTRVIHDLGGDVIATGVLG GFHGAFIANELKKANIPQAFTSIKEETRDSIAILHEGNQTEILEAGPTVSPEEISNFLEN FDQLIKQAEIVTISGSLAKGLPSNFYQELVQKAHAQEVKVLLDTSGDSLRQVLQGPWKPY LIKPNLEELEGLLEQDFSENPLAAVQTALTKPMFAGIEWIVVSLGKDGAIAKHHDQFYRV KIPTIQAKNPVGSGDATIAGLAYGLAKDAPAAELLKWGMAAGMANAQERTTGHVDVENVK KHLMNIQVVEIAK >gi|307679278|gb|GL456449.1| GENE 49 43484 - 45268 1750 594 aa, chain + ## HITS:1 COG:SP0060 KEGG:ns NR:ns ## COG: SP0060 COG1874 # Protein_GI_number: 15900005 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase # Organism: Streptococcus pneumoniae TIGR4 # 1 590 1 591 595 842 67.0 0 MDRFEIKEEFLLNGQPFKILSGAIHYFRVDPSDWHHSLYNLKALGFNTVETYVPWNLHEP QKGTFHFEGILDLERFLKLAQELGLYAIVRPSPYICAEWEFGGFPAWLLNEPGRMRSNNP TYLKHVAEYYDVLMEKIVPHQLANGGNILMIQIENEYGSFGEEKAYLRAIRDLMIARGVT APFFTSDGPWRATLRAGSMIEDDILVTGNFGSKAKENFGMMQAFFEEHGKKWPLMCMEFW DGWFNRWKEPIIKRDPQELAESVREALALGSINLYMFHGGTNFGFMNGCSARGTIDLPQI TSYDYDAPLDEQGNPTEKYFALQKMLHEEYPALPQAEPLVKDSFAQTAIPLTNKVSLFAT LETISQPVVSVYPQTMEQLGQNTGYLLYRTSIEKDAAEEKLRVIDGRDRLQLFVNQVHQA TQYQTEIGEDIYVTLPQENNQIDVLIENMGRVNYGHKLFADTQKKGIRTGVMADLHFMTQ WQQYCLPMTSCEQVDYSREWQPDQPSFYQYHMELAEVKDTFIDVSKFGKGIVFVNQTNLG RFWNVGPTLSLYIPKGLLKEGQNEIVIFETEGTYRPEIQLVKEPLYKEMKEGLQ >gi|307679278|gb|GL456449.1| GENE 50 45265 - 45744 528 159 aa, chain + ## HITS:1 COG:SP0061 KEGG:ns NR:ns ## COG: SP0061 COG3444 # Protein_GI_number: 15900006 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Streptococcus pneumoniae TIGR4 # 1 157 1 157 158 221 74.0 6e-58 MSIIGVRIDGRLIHGQVANLWATKLNISRIMVVDDEVAGNAIEKSGLKLATPAGVKLSVL PVEKAAQNILAGKYDSQRLLIVVRKPDRLLKLVELRVPIKEINVGNMSQTNETRSITKSI NVVDQDIDVFKELNAKGVHLIAQMVPSDKAEDFMSLITK >gi|307679278|gb|GL456449.1| GENE 51 45758 - 46657 1293 299 aa, chain + ## HITS:1 COG:SP0062 KEGG:ns NR:ns ## COG: SP0062 COG3715 # Protein_GI_number: 15900007 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Streptococcus pneumoniae TIGR4 # 3 298 2 300 301 288 52.0 9e-78 MNILWWQILLLTLYAGYQILDELQIYSSLSAPVFAGLFAGLVMGDIKAGLIIGGSMQLTV LGVGTFGGASKIDANSGTILATAFSVSLGMNPEQAIAAIAVPVASLMIQLDILARFANTY FAHRIDKMVEDMNYKGIERNFLMGALPWSLSRMIPVFLALAFGGGLVQKVVSVLNGDLKW LGDGLSVAGAVLPAVGFAILLRYLPVKKHFPYLILGFTVTALLGTIFTNMQLLGTSVASV VKDFSGVFNALPMLAVALIGFALAAISYKNGQMIPSGPAAKKEHAANDSDEGEIEDDEI >gi|307679278|gb|GL456449.1| GENE 52 46644 - 47453 891 269 aa, chain + ## HITS:1 COG:SP0063 KEGG:ns NR:ns ## COG: SP0063 COG3716 # Protein_GI_number: 15900008 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Streptococcus pneumoniae TIGR4 # 1 265 1 265 271 351 64.0 1e-96 MTKSNYKLTKEDFKQINRRSLFTFQLGWNYERMQGSGYLYTILPQLRKIYGDDTPELKEV MKTHTQFFNTSNFFNTIITGIDLAIEEKEGIAGKQTVSGLKTGLMGPFAAIGDSIFAALI PTIFGALAANMAINGNPTGIFIWIVAQIAVMVFRWKQLEFAYREGISLVTTMQHRLTALT DAATLLGVFMVGALVATMVNVKLSWAPSIGDVTLNMQNNLDMILPRLLPAGIVGGVYWML GKKNMTSTKAIFIVLIVCVALSALGVISK >gi|307679278|gb|GL456449.1| GENE 53 47473 - 47880 471 135 aa, chain + ## HITS:1 COG:SP0064 KEGG:ns NR:ns ## COG: SP0064 COG2893 # Protein_GI_number: 15900009 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Streptococcus pneumoniae TIGR4 # 1 135 1 134 134 167 62.0 4e-42 MSEHLVLVSHGRFCEELKKSAEMIIGPQETISTVTLLPEEGEADFLEKFEAITESLEDFV VFADLLGGTPCNILSKKIMQGASFDLYTGMNLPMVISYVNASLLAIEGDYVKESAESIVK VNELLLNVAVDDEDE >gi|307679278|gb|GL456449.1| GENE 54 48030 - 52004 3958 1324 aa, chain + ## HITS:1 COG:no KEGG:EF1800 NR:ns ## KEGG: EF1800 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 1324 1 1324 1324 2486 99.0 0 MKHGKIKRFSTLTLLASATILVPLSTSAEETTNSSTETSSSMVEPTATEEKLWQSDFPGG KIGEWQDVIGKTNRELAGESLAISRDAAAGNNAVSLNLDSPKLADGEVETKFKYTAGSGR TGVIIRGNTKDSWVFVGYNANGKWLVESPNSWNDSISGPTLNEDTNYLLKVRYVGEKITI WLNTTLIYEGEPVLANGDKIPTEAGHVGVRLWYDKKIVNYDYFKNGPVDSIPEIVPEVTQ IAPVKVFTKIGVAPKLPKQVKVTYNTGKEANEAVSWNEIDPDAYKEPGTFEVDGTFENTN IKAKASIVVAKDNEAEKGDKISSADLTAVVDPQFPRIIRYEDPQSNQVIFNGQHEKIDQV MIDGKAYKATAEKQKSEANQAVYNVAVPEIGLHFTTTLTVSEGQELAMKLSDIREEGTKI HTISIPNQGLISVNSTDEGATFAGVVMNTGTNANNGNKNGDTIQDLTTTSQEETKKYMYG FLNTANYAASFWTNAYGDGSVDGSDNNRIHKQTKETATGFVTTLSSGAWTYRPFDAPEDY TTGETPEVKVKFSKDSNDDNRVDWQDAAIGFRSIMNNPMGAEKVPELVNQRIPFNFASQA TNPFLVTLDESKRIYNLTDGLGQMNLLKGYQNEGHDSAHPDYGAIGQRPGGEQALNQLID EGHKLNAVFGVHINDTESYPEAKGFNEELVDPTKRGWDWLDPSYFIKQRPDALSGRRYER FKELKQKAPNLDYIYVDVWGNQGESGWASRQLSKEINSLGWFTTNEFPNALEYDSVWNHW SAEKDYGGTTTKGFNSTIVRFIRNHQKDTWIISDNPLLGGAEFEAYEGWVGKTNFNTYRQ KTFAINVPTKFLQHYQITNWETTTAADGQIYGTIKLANGAEKVTVTQADANSPRSITLNE TEVLKGDAYLLPWNVNGQDKLYHWNPKGGTSTWSLDKKMQGKTNLHLYELTDQGRIDKGA IATTNNQVTIQAEANTPYVIAEPDSIEPMTFGTGTPFKDPGFNEANTLKNNWKVFRGDGE VKKDANGDYVFSSEKERTEIKQDINLPKPGKYSLYLNTETHDRKATVTVKIGGKKYTRTV NNSVAQNYIQADINHTSRKNPQYMQNIRIDFEIPDNAKKGSVTLAVDKGNSVTKFDDLRI VERQTDIMNPDKQTVIKQDFEDTQAVGLYPFVKGSAGGVEDPRIHLSERNEPYTQYGWNG NLVSDVLEGNWSLKAHKQGAGLMLQTIPQNIKFEPNKKYTVQFDYQTDGENVFTAGTING ELKNNNDFKPVGELTSTAADGQTKHYEAEIIGDASGNTTFGIFTTGADKDFIMDNFMVTV ESKK >gi|307679278|gb|GL456449.1| GENE 55 52542 - 53696 907 384 aa, chain + ## HITS:1 COG:lin0908 KEGG:ns NR:ns ## COG: lin0908 COG0628 # Protein_GI_number: 16799980 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Listeria innocua # 78 365 69 350 378 96 27.0 6e-20 MKKYNVDWNYWVVRFLFVMALIVGYLLITNYQHFVHSVSGLLGILSPFITGFVIAYLLSG SQKKIEGLLERVPLPVVKKAKHGLSVLLLYLIILFIFVLTLNYIVPLLISNLVDLANSLP TFYDHMVQFVMSLEDKGILKTAAIEKYLNSVLKDLSPERFLNQWTQALFSLGTLTKNVSS FFLNAFLTLIISIYALVFKQSILTFVEKAAHKLLSEKVYKQTQTWLNTTNKIFYKFISCQ FLDACIIGVSSTILLSILNVKFAVTLGILLGICNMIPYFGSIFASIVAGVITLFTGGVTQ AITVLLVLLILQQIDGNIIGPRIMGDALNVNPILIIVSITIGGAYFGVLGMFLAVPVAAI IKIIVSEWLNESKENDKIVDSIES >gi|307679278|gb|GL456449.1| GENE 56 53817 - 54461 448 214 aa, chain + ## HITS:1 COG:no KEGG:EF1797 NR:ns ## KEGG: EF1797 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 214 1 214 214 397 99.0 1e-109 MQLLKKYGGYFLVLGVLLDFFTPYYVGFKDQGYNQLTEVISLLGDVNSPVRENFNRLTII AGMLMLASLPRIYAIFSRKTKKGAWLVVAMIGAYGLFDCIFSGLFSVDTSTAGTVAAALH NGGSAVGYTGFLLLSGVLTIIYSKYGSQKNKNLFGFLFILCMLAAGLYGLARIPQLQQVK PFNYLGLWQRVSSFCNYLPMLALCLQTKTNDKFD >gi|307679278|gb|GL456449.1| GENE 57 54508 - 55077 723 189 aa, chain - ## HITS:1 COG:no KEGG:EF1796 NR:ns ## KEGG: EF1796 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 189 15 203 203 281 99.0 1e-74 MKMSKVLTTVLTATAALVLLSACSSDKKTDSSSSSKETANSSTEVVSGASISAKPEELEM ALSDKGNWIVAATDNVTFDNEVTVAGTFHDKGKDSNDVYRKLALYSQDDNKKVTAEYEIT VPKLIVSSENFNIVHGTVKGDIEVKANGFTLNGTKVNGNITFDKQEYKDSADLEKDGATV TGEVTVANN >gi|307679278|gb|GL456449.1| GENE 58 55298 - 55750 699 150 aa, chain + ## HITS:1 COG:BS_ydaT KEGG:ns NR:ns ## COG: BS_ydaT COG4876 # Protein_GI_number: 16077505 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 143 1 143 150 95 40.0 2e-20 MPWNMNDYPTSMKNLAPLIRKKAIDIGNALLADGYPDDRAIPIAISQAEKWYQEASAADK KAFEQEANPTKQDSHKQDKHAGKLLTAAVNVKYKDDQWLVISDSAEKASNTFTHKQEAIE RAQEIARNKQTKLKIYKQDGTLQETKEYTE >gi|307679278|gb|GL456449.1| GENE 59 55941 - 56960 1185 339 aa, chain + ## HITS:1 COG:lin0977 KEGG:ns NR:ns ## COG: lin0977 COG0115 # Protein_GI_number: 16800046 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase # Organism: Listeria innocua # 5 338 4 337 339 538 74.0 1e-153 MEKANLDWNNLGFSYIKTPFRYISYWRDGKWEEGTLTDNNQLTISEGSPALHYGQQCFEG LKAYQCADGSVNLFRPDENAKRLQKSCARLLMPQVPVETFVSACQEVVKANLAYLPPYGT GGTLYLRPYMIGVGDNIGVAPAKEYIFSIFCVPVGSYFKNGLAPTNFIVSEYDRAAGRGT GAAKVGGNYAASLLPGAEAHEKEFSDCIYLDPYTHTKIEEVGAANFFGITKEGTFITPKS ASILPSITKYSLLTLAKERLGMTALEGDVYIDRLADFSEAGACGTAAIISPIGGIQNGTD FHVFYSETEVGPVTKQLYDELVGIQFGDKEAPEGWIVKA >gi|307679278|gb|GL456449.1| GENE 60 57096 - 57416 462 106 aa, chain + ## HITS:1 COG:no KEGG:EF1792 NR:ns ## KEGG: EF1792 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 27 106 1 80 80 147 97.0 1e-34 MLIKSAESEEMTIFFDKENQPNAQVQMGIITLQPGEKRPLAGYARHEQDEYSYVISGEAH TILEDGQDLVGKAGQAQLIEAGEGHINYNDGLEQAVVVWMLVERTK >gi|307679278|gb|GL456449.1| GENE 61 57479 - 59119 1580 546 aa, chain + ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 1 545 1 549 549 476 46.0 1e-134 MKKYLKIIMVCILLVGFLAGCTNKNENKKKQKNTKEAVQLMSPSELTTLNTSVLLDFPDA IVQTAAFEGLYSLDEQDQLVPAVAKALPMISEDGKTYTISLRKEAVWSNDDPVTAHDFEY AWKKMIDPKNGFVYSFLIVETIQNGAEISAGKLAPNELGVTAVDDYTLKVTLKEPKPYFT SLLAFPTFFPQNQKVVEQFGADYGTASDKVVYNGPFVVKDWQQTKMDWQLAKNNRYWDHQ NVRSDIINYTVIKETSTALNLFEDGQLDVATLSGELAQQNKNNTLYHSYPTATMNYLRLN QKRKGQTTPLANENLRKALALGIDKENLVNNIIADGSKALHGAITEGFVANPTTGLDFRQ EAGNLMVYNKEKAQSYWKKAQAELGEKVNVELMVTDDGSYKKIGESLQGSLQELFPGLTI ELTALPTEAALNFGRESDYDLFLIYWTPDYQDPISTLMTLYKGNDRNYQNPVYDKLLDEA ATTYALEPEKRWATLIAAEKEVIETTAGMIPLSQNEQTVLQNDKVKGLNFHTFGAPLTLK NVYKEK >gi|307679278|gb|GL456449.1| GENE 62 59217 - 60092 330 291 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90022317|ref|YP_528144.1| ribosomal protein S15 [Saccharophagus degradans 2-40] # 13 248 239 475 500 131 34 3e-29 MRYLSKDILEEVITQRPSDSYKSNFGRVVLIGGNRQYGGAIIMSTEACINSGAGLTTVIT DVKNHGPLHARCPEAMVVGFEETVLLTDVVEQAEVILIGPGLGLDATAQQILKMVLAQHQ KQQWLIIDGSAITLFSQGNFSLTYPEKVVFTPHQMEWQRLSHLPIEQQTLVNNQRQQAKL GSTIVLKSHRTTIFHAGEPFQNTGGNPGMATGGTGDTLAGIIAGFLAQFKPTIETIAGAV YLHSLIGDDLAKTDYVVLPTKISQALPTYMKKYAQPHTAPDSELLEQKRSR >gi|307679278|gb|GL456449.1| GENE 63 60241 - 61107 1107 288 aa, chain + ## HITS:1 COG:Cgl2775 KEGG:ns NR:ns ## COG: Cgl2775 COG0330 # Protein_GI_number: 19554025 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Corynebacterium glutamicum # 19 286 46 323 325 232 42.0 6e-61 MEEKKTFYMSGYVGIASLLVILIAGIGLFIYGASHTNGVLVVLGIILLVGAILFLSSLTI VSPNQAKAILFFGRYLGTIKENGLFITIPFTQKMNISLKVRNFNSSLLKVNDSDGNPIEI SAVIVFRVVDTAKALFNVDYYQDFVEIQSETAIRHVATQYPYDTFSDNDVTLRGNTEQIS EELTKELQERLAVAGVEVIETRLNHLAYATEIASSMLQRQQAKAILAARQTIVEGAVSMT QMALEQIEEGQEINFTDERKVQLINNLLVSIITDKGTQPVINTGDVSS >gi|307679278|gb|GL456449.1| GENE 64 61281 - 61769 512 162 aa, chain + ## HITS:1 COG:BS_purE KEGG:ns NR:ns ## COG: BS_purE COG0041 # Protein_GI_number: 16077710 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase # Organism: Bacillus subtilis # 1 161 1 161 162 218 69.0 4e-57 MKPLVAVIMGSTSDWATMKATCLVLEELGIPYEKRVISAHRTPDLMFRFAEESRTKGLKV IIAGAGGAAHLPGMVAAKTTLPVIGVPVKTRTLNGIDSLLSIVQMPGGVPVATTAIGSAG ATNAGLLAAEILSIDDLQLAERIQARRQSLEKAVMESGEQLE >gi|307679278|gb|GL456449.1| GENE 65 61762 - 62886 919 374 aa, chain + ## HITS:1 COG:lin1886 KEGG:ns NR:ns ## COG: lin1886 COG0026 # Protein_GI_number: 16800952 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) # Organism: Listeria innocua # 18 371 19 373 374 373 50.0 1e-103 MNKPLKVGATIGIIGGGQLGRMLVMSGKKMGFQMIVLDPTLNSPAGQVADRQIVAAFDQI SALTELAELCDVITYEFENIEVASLEKAIPLEKLPQGTGLLKITQNRLLEKMFLQSIGCK IASFAEVKSQKELPQATEKIGFPCVLKTIQGGYDGKGQVVLKCEEDFSQATELLANATCE LEKWVPFTKELSIIVAGNKHGYQSFPVSENIHRKNILHESIVPARISENVQQKAAELAQH IAEELNLSGVLAIELFLTDSEELYVNELAPRPHNSGHYSIEACSFSQFDAHIRGISNWGI GLPQLLQPVVMVNLLGEHLEKSYQLCTSKPTWQVHYYGKAGSKVGRKMGHVTITTPCLSE TLKEIETVGIWNVT >gi|307679278|gb|GL456449.1| GENE 66 63038 - 63751 678 237 aa, chain + ## HITS:1 COG:BS_purC KEGG:ns NR:ns ## COG: BS_purC COG0152 # Protein_GI_number: 16077713 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase # Organism: Bacillus subtilis # 3 233 5 235 241 262 57.0 4e-70 MEKKALVYTGKAKKLYQTENAAVLFVEYLDQATALNGQKKDKVLGKGALNNQITSLIFEH LQQQKIPNHFIKKVSEHEQLIQAVEMIPLEVVVRNYAAGSFSKRLAIEEGTKLVTPIIEF YYKEDRLDDPFINEDHIQFLKVATPAEIVEIKALALQINQALSQLFQRLNICLIDFKIEI GRTKANQLLLADEISPDTCRLWDLNTNEHLDKDVYRRELGEIVPVYEEVLQRLLTAN >gi|307679278|gb|GL456449.1| GENE 67 63765 - 64016 389 83 aa, chain + ## HITS:1 COG:BH0627 KEGG:ns NR:ns ## COG: BH0627 COG1828 # Protein_GI_number: 15613190 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component # Organism: Bacillus halodurans # 1 77 1 78 84 79 53.0 2e-15 MYFVKVYVTYKESILDPQGEAVKEAVHRLGFTEVAEIRVGKYFEMHVQQTEAIEEKIEQI CDQLLANVNMESYRFEILSLEEI >gi|307679278|gb|GL456449.1| GENE 68 64017 - 64691 662 224 aa, chain + ## HITS:1 COG:L176360 KEGG:ns NR:ns ## COG: L176360 COG0047 # Protein_GI_number: 15673513 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain # Organism: Lactococcus lactis # 1 218 1 220 223 302 66.0 4e-82 MKLAVIVFPGSNCDADLLWAVKEVMGVDAEFVRHDATSLAKFDGVLLPGGFSYGDYLRCG AIARFSPIINEVIRFAAEGKMVFGTCNGFQILTEIGLLPGTLLRNDSLRFICKSVPLKVN THTKFTSEYPENVSIHLPVAHGEGNYYCDEKTLKELKEKNQIVFTYQEKVNGSLANIAGI CNEQGNVLGMMPHPERAMEELLGSTDGRSFFASIIKNFGKELSQ >gi|307679278|gb|GL456449.1| GENE 69 64688 - 66907 2267 739 aa, chain + ## HITS:1 COG:L173921 KEGG:ns NR:ns ## COG: L173921 COG0046 # Protein_GI_number: 15673512 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain # Organism: Lactococcus lactis # 1 736 1 739 739 1024 68.0 0 MMNEPTPKEIKETRLYAEWGLTDEEYHQIETILQREPNYTETGLFSVMWSEHCSYKNSKP VLKKFPTEGPQVLQGPGEGAGIVDIGDGLAVVFKAESHNHPSAVEPYEGAATGVGGIIRD IFSMGARPIALLDSLRFGELTDARTRYLFQEVVAGISGYGNCIGIPTVGGEIAFEPCYQG NPLVNAMCVGLIRHDEIQKGQAKGVGNSILYVGAKTGRDGIHGATFASEEFSEGEEQQRS AVQVGDPFMEKLLLEACLDLIKNHQDILIGIQDMGAAGLVSSSAEMASKAGSGLILELDK VPQRETQMSPYEMLLSESQERMLICVEKGAEQQACELFQTYNLEAVAIGSVTDDGQYRVF HGGKIVADVPVDALAEEAPVYQKAYQEPERMRAFKKLAPFIPEITNSTELLKRLLQQPTI ASKKSVYETYDSQVQTNTVVQPGSDAAVLRVRGTNKALAMTTDCNSRYLYLNPEIGGQIA VAEAARNIVASGAQPLAITDCLNYGSPDKPESFWELWTSADGIAAACRQLGTPVISGNVS LYNETDGQAIYPTPMIGMVGVIEDVSQITTQAFKQVDDLIYLIGETHPDFNGSEIQKMQL GRIEGLLRSFDLKEEKANQELVLKAIQAGLVASAHDCAEGGVAVALAESAFANELGLQVT LPLTKEYLFAETQSRFILSVSPQHQEAFETLIGRKAQHIGKVTETGLVIHALDDVINCST KEAKALWEDAIPCLMKQKA >gi|307679278|gb|GL456449.1| GENE 70 66883 - 68322 1334 479 aa, chain + ## HITS:1 COG:SPy0026 KEGG:ns NR:ns ## COG: SPy0026 COG0034 # Protein_GI_number: 15674270 # Func_class: F Nucleotide transport and metabolism # Function: Glutamine phosphoribosylpyrophosphate amidotransferase # Organism: Streptococcus pyogenes M1 GAS # 1 476 1 476 484 704 70.0 0 MSYEAKSLNEECGIFGIWGHPDAAQVTYFGLHSLQHRGQEGAGIVANNSGKLDGHRDLGL LAEVFQKQEQLNALEGTAAIGHVRYATAGTGSVDNIQPFLFKFYDSQIGLAHNGNLTNAK RLRKQLEREGAIFHSNSDTEILMHLIRKSTAVSFLDKLKESLNLVKGGFAYLLLTETMMI AALDPNGFRPLSIGQMNNGAYVVASETCALETVGARFIQDVAPGEVVIISDEGLKIEVFT TEVQPAICAMEYIYFARPDSNIAGVNVHTARKRMGKNLAIESPVAADMVIGVPNSSLSAA SGYAEEAQIPYELGLVKNQYVARTFIQPTQELREQGVRMKLSAVRGVVKGKKVVLVDDSI VRGTTIRRIIHLLKEAEAQEVHVRIASPPLKYPCFYGIDIQTRDELIAANYSIEEIKEQI GADSLAFLSEAGLIDGIQLNYDAPYSGLCMAYFNGDYPTPLYDYEEQYQASLKKETRRN >gi|307679278|gb|GL456449.1| GENE 71 68324 - 69355 761 343 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149378138|ref|ZP_01895857.1| Ribosomal protein S7 [Marinobacter algicola DG893] # 5 320 10 320 354 297 48 3e-79 MENAYSKAGVNVEAGYEVVERIQKHSQKTQRTGTLGMLGGFGGCFDLSSYKLKEPVLVSG TDGVGTKLLLAIEEQRHETIGIDCVAMCVNDVVAQGAEPLYFLDYLALGTVNPAKVEAIV AGVAAGCCEANAALIGGETAEMPDMYEADAYDVAGFAVGIAEKSQLLTPSNVKEGDFLIG LPSSGLHSNGYSLVRNIFFKKHSFKTTDKLPELAPKTLGEELLTPTKIYVKELLPLLKAG LVHGAAHITGGGFLENLPRMFSSALAAEIQLNSWPVLPIFKLIQKYGEIPPEEMYEIFNM GLGMILAVSPEHVEKVQELLPEAFEIGRLVPRKTKAVIFKEAL >gi|307679278|gb|GL456449.1| GENE 72 69352 - 69924 269 190 aa, chain + ## HITS:1 COG:BS_purN KEGG:ns NR:ns ## COG: BS_purN COG0299 # Protein_GI_number: 16077719 # Func_class: F Nucleotide transport and metabolism # Function: Folate-dependent phosphoribosylglycinamide formyltransferase PurN # Organism: Bacillus subtilis # 2 185 3 186 195 211 50.0 5e-55 MKIAVFASGNGSNFEAIAAAFSQKKIAGQLSLVFCDQPEAYVLTRAQKRKIPVVCFSPSD FSSREQYEEQVLKHLKEHQIDLIVLAGYLRIIGKTLLEAYPKRIVNIHPSLLPSFPGLHG IEEAFHYGVKITGITIHYVDSGVDTGPIIFQTTTKIDTEDTLDTLTEKIHALEHEWYPKI ISQIVKETMK >gi|307679278|gb|GL456449.1| GENE 73 69921 - 71462 1566 513 aa, chain + ## HITS:1 COG:SP0050 KEGG:ns NR:ns ## COG: SP0050 COG0138 # Protein_GI_number: 15899995 # Func_class: F Nucleotide transport and metabolism # Function: AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) # Organism: Streptococcus pneumoniae TIGR4 # 1 513 1 515 515 649 64.0 0 MTKRALISVSDKTGVTTFAAGLVANGFEIISTGGTRTVLEEAGVPTLAIDDITGFPEMLD GRVKTLHPNIHGGLLAKRGNQTHQKALTEQGIQFIDLVVVNLYPFKETILKPAISEAEAI EMIDIGGPSMLRSAAKNYQDVTAVVDPSDYEQVLSEISSTGTSQLATRKRLAAKVFRHTA AYDALIADYLTTQVGETEPEKQTLTYERKQTLRYGENSHQQATFYQSVVPVSLSIASARQ LHGKELSYNNIRDADAALRIASEFTEPTVVAVKHMNPCGIGTGKTILAAYRQAFEADPVS IFGGIVVLNRPVDQATAAEMHQIFLEIIIAPSFEEEALALLSQKKNLRLLTLDFHAQEKK AVELVSVMGGLLIQEQDTVVENDQAWQVVTERQPTPAERDALNFAWKAVKHVKSNAIVLA NESQTVGIGAGQMNRIGSVKIAVDQAQAAGKLQGAVLASDAFFPMADSVEYAAQHGIQAI IQPGGSIKDQASIDLANHYGIAMIFTGTRHFKH >gi|307679278|gb|GL456449.1| GENE 74 71481 - 72728 1373 415 aa, chain + ## HITS:1 COG:BH0634 KEGG:ns NR:ns ## COG: BH0634 COG0151 # Protein_GI_number: 15613197 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylamine-glycine ligase # Organism: Bacillus halodurans # 1 414 1 417 428 435 56.0 1e-122 MNILVIGRGGREHAIAKKLQQEDKVKTVYCAPGNPGMSGDNIRTVPISEEQQTELIQFAK DNQIDWTFVGPETPLIEGIVDAFQAAGLLIFGPTKAAAIIEGSKSFAKDFMQKYQIPTAE YRVFRRLAPALEYIEKQGVPIVIKADGLAAGKGVVVAETKAAAKRALVAMMEDQQFGASG QTVVIEEFLQGEEFSLMAFVSNEKVYPMVIAQDHKRIFDGDAGPNTGGMGAYTPVPQIPE EAVQQAISQVLKPTAKGMVAEKRPFQGILYAGLIQTETGPKVIEFNARFGDPETQVVLAR LESPLSEIISSLLAKEQPTIAWNELASVGVVVAAEGYPNQYKTNLPLPEMSGETIHYAGV TRSEQALVSAGGRIFLAEATASTLEEARKKVYQTLDNYSFPGMYYRKDIGVKGLI >gi|307679278|gb|GL456449.1| GENE 75 72856 - 73185 303 109 aa, chain + ## HITS:1 COG:no KEGG:EF1776 NR:ns ## KEGG: EF1776 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 109 1 109 109 181 93.0 8e-45 MRNKQIEKVSQRLFIVTSVLAVSLLLLSALVYPDLPAHVPIHVNFWGKGNSFGPRSSIFM WPVVLFGLSIYQRSYQSVQPYGRWLKVFLIIVNLGALFSILRLFIHLLV >gi|307679278|gb|GL456449.1| GENE 76 73206 - 73940 431 244 aa, chain + ## HITS:1 COG:no KEGG:EF1775 NR:ns ## KEGG: EF1775 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 244 1 244 244 465 97.0 1e-130 MRKLILVFVGCAMAFCLWPNQAAAVAGGYGGGRVESPSGGNPSNGFSPGGDGSRSYVHHN ETGTSNTTPLEGLISTVFFVLFGGVMIWQRRRRNQPVDEGAFQEMWAVLPGTSKEKKALL KEIQQTFLEIQQAWDQENLSVVKDNYTEKLYQKHLAVLQANQQAGIRNHVKKVKVAPASN YHHISETSFSLMLHFSCIDYEEDIQSGLVLSGYKHQKQYFSQLWYFDYNPSLGKWQADFI QPKG >gi|307679278|gb|GL456449.1| GENE 77 74006 - 74527 432 173 aa, chain - ## HITS:1 COG:lin0860 KEGG:ns NR:ns ## COG: lin0860 COG4708 # Protein_GI_number: 16799934 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 21 172 10 162 162 94 39.0 8e-20 MNHSSNPQTSTWSATALAKMALVTALYVVVTVLLAPLSFGPIQLRLAELFNYLGVFNKRY IWSITLGVAIANAASPLGIIDIVIGSAGTCAVLWIAYFATKNQQNLLIKLMLTAILFALS MFTVAGPLTFFYQLPFWYTWLTVGLGELLSMTVGGILIYVLNKKIQLVKRIEE >gi|307679278|gb|GL456449.1| GENE 78 74673 - 75437 246 254 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 8 249 4 238 242 99 30 2e-19 MPKEFETKRVLVTGAASGIGQAQAIAFAEQGAEVIGIDLDETGLKQTAALVNPDSTKPFT YFVGDVSSPSFVQATMKQIVKDNGQIDILLNTAGILDDYRPSLETSEALWDQILATNLKS VFLVTNALLPYFLQQKKGVIVNMASIAGLVAGGGGAAYTASKHAIIGYTKQLSYDYAKLG IRANAIAPGAIQTPMNAADFAGEGEMATWVASETPAGRWAQPQEVAKLSLFLASDDADYI HGTVMTIDGGWTMK >gi|307679278|gb|GL456449.1| GENE 79 75521 - 75754 457 77 aa, chain - ## HITS:1 COG:no KEGG:EF1772 NR:ns ## KEGG: EF1772 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 77 1 77 77 148 100.0 7e-35 MTFEEVLPQIKAGKKAVRKGWSGFELFIELRDEIGTSEGEFLQVTPYFLIKTSDEGYSMF SPTPCDVLAEDWVIVEA >gi|307679278|gb|GL456449.1| GENE 80 75744 - 76406 640 220 aa, chain - ## HITS:1 COG:L98095 KEGG:ns NR:ns ## COG: L98095 COG1739 # Protein_GI_number: 15673073 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 6 210 3 207 209 223 53.0 3e-58 MLESYITVKQDGFSEIEIKKSRFICSVKRVTSEEEAKAFIAAIKKEHWKANHNCSAFVIG EKNDIQRSSDDGEPSGTAGVPMLEVLKKKELINVVAVVTRYFGGIKLGTGGLIRAYSHAL SHTLDEIGLVIGKLQQELLITIAYPLLGKAQAFLEHSPYTLKETIYTESIQLICLVDEQA TETFIAEMTDLLNGQLTIEKGATSYHELPFNEKGAQANDI >gi|307679278|gb|GL456449.1| GENE 81 76548 - 76835 303 95 aa, chain + ## HITS:1 COG:no KEGG:EF1770 NR:ns ## KEGG: EF1770 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 95 1 95 95 177 100.0 1e-43 MVHTRQKKYDTITHYLKTNGGSQVTLTFTQFDELLFPHSGLPKTAKTDVDWWANDYKHPE KGAYGWLNASYQVVQVNLEKEYVVFNKLLKSAWYV >gi|307679278|gb|GL456449.1| GENE 82 76956 - 77291 436 111 aa, chain + ## HITS:1 COG:lin2831 KEGG:ns NR:ns ## COG: lin2831 COG1440 # Protein_GI_number: 16801891 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIB # Organism: Listeria innocua # 4 104 2 100 101 115 64.0 1e-26 MSKKTIMLVCSAGMSTSLLVTKMQKAAFNQGLDAHIFAASASEADTNLENNPVDVLLLGP QVRYMKSDFEKRLSPKGIPTDVISMSDYGLMNGEKVLEQALDLLAQADKKE >gi|307679278|gb|GL456449.1| GENE 83 77299 - 77376 64 25 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFFRESSKKQLVFFFRKKAREMRIL >gi|307679278|gb|GL456449.1| GENE 84 77391 - 78707 837 438 aa, chain + ## HITS:1 COG:lin2657 KEGG:ns NR:ns ## COG: lin2657 COG4098 # Protein_GI_number: 16801718 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) # Organism: Listeria innocua # 58 436 57 438 439 317 43.0 3e-86 MEDLHGRKIIIEETERSIQTKLVYLPTMLERSPLTIQCQRCGEVVSKKENRLATNVYYCH ACIQLGRVTSCQKFCHLPERPNSPRTVFFEWSGQLTKGQQAISVELCETAKARENRLVWA VTGAGKTEMLFAVLHQTLQEGGRIALASPRVDVCLELFPRIQAVFPHEAIALLHGNSQEA YRYTKLVICTTHQLLKFHQAFDLLIVDEVDSFPFVNNEHLYYGVRNARKKRSSLVYLTAT PTKELRKLLQQKKLAASILPARYHRRPLPVPRRFWVQSWQRLSSKNIKIIAHHLKRLLVR NSVLLFCPSISLIHQLHALIAQRFSDKEVVAVYGSDELRLEKVQAMRQQKTDILITTTIL ERGVTFDAVSVIVYGANHRVFTSSTLVQIAGRVDRRQEFNYGEVLFLHDGETRDMKEAIR QIKQMNRLASKRGMLDGL >gi|307679278|gb|GL456449.1| GENE 85 78964 - 79383 263 139 aa, chain + ## HITS:1 COG:lin2656 KEGG:ns NR:ns ## COG: lin2656 COG1040 # Protein_GI_number: 16801717 # Func_class: R General function prediction only # Function: Predicted amidophosphoribosyltransferases # Organism: Listeria innocua # 1 139 84 218 218 94 38.0 7e-20 MERYKFQGDYRLRTCFNEEINSYFRQQSADYIIPVPLSEKRMQERGFNQVIGLLEAADVP YSPFLIRKEENVPQSKKTRKERMRLQQPFAIQKENQKKLKNCSVILVDDIYTTGRTLFHA AAVINDCYPKSLNTFTLAR >gi|307679278|gb|GL456449.1| GENE 86 79522 - 80073 669 183 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116333275|ref|YP_794802.1| ribosome-associated protein Y (PSrp-1) [Lactobacillus brevis ATCC 367] # 1 183 1 183 186 262 69 1e-68 MFRYNVRGENIEVTEAIRDYVEKKVGKLERYFSDSPEATVHVNLKVYTEKTAKVEVTIPL PYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTKINRKSRETGRNNTKAAVFLVGEETE ETPSELDIVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDAETNGTSIVYRRKDGKYGLI ETD >gi|307679278|gb|GL456449.1| GENE 87 80329 - 82866 3126 845 aa, chain + ## HITS:1 COG:SPy1805 KEGG:ns NR:ns ## COG: SPy1805 COG0653 # Protein_GI_number: 15675639 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Streptococcus pyogenes M1 GAS # 1 845 1 837 839 1102 68.0 0 MANFLKKMIENDKKELRRLEKIADKIDAHASAMEQLSDEQLREKTDEFKARYQKGETLDE LLPEAFAVVREAAKRVLGLFPYRVQLMGGIVLHDGNIPEMRTGEGKTLTATMPVYLNALS GEGVHVVTVNEYLATRDSNEMGELYNFLGLSVGLNINSKSSDEKREAYNCDITYSTNNEL GFDYLRDNMVVYRSQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKSTALYTRADNF VKRLKEDEDYKIDIQSKTIGLTEAGIEKAEQTFGLDNLYDIENTALTHHLDQALRANYIM LLDIDYVVQDNKVLIVDQFTGRIMDGRRYSDGLHQAIEAKEGVEIEDETKTMATITFQNY FRMYKKLAGMTGTAKTEEEEFREIYNIQVIQIPTNRPIIRDDRPDLLYPTLESKFNAVVE DIKERYHKGQPVLVGTVAVETSELLSDKLNAAKIPHEVLNAKNHFKEAEIIMNAGQKGAV TIATNMAGRGTDIKLGLGVLELGGLAVIGTERHESRRIDNQLRGRAGRQGDPGVSQFYLS LEDDLMKRFGSERIKTFLERMNVQEEDAVIQSKMFTRQVESAQKRVEGNNYDTRKNVLQY DDVMREQREVIYAQRQEVIMEENDLSDVLMGMVKRTIGRVVDSHTQLEKEEWNLDGIVDF AASTLVHEDTISKKDLENKSAEEIKDYLVARAQEVFEEKSQQLNGQEQLLEFEKVVILRV VDTKWTDHIDAMDQLRQSVGLRAYGQNNPLVEYQTEGYSMYNNMVGSIEYEVTRLFMKSE IRQNVQREQVAQGQAEHPETEQDAAAQSNTSAKRQPVRVDKKVGRNDLCPCGSGKKFKNC HGRNA >gi|307679278|gb|GL456449.1| GENE 88 82943 - 83017 74 24 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MENPEIRTLLDEMTQKITSFRRSL >gi|307679278|gb|GL456449.1| GENE 89 83061 - 84044 1019 327 aa, chain + ## HITS:1 COG:lin2653 KEGG:ns NR:ns ## COG: lin2653 COG1186 # Protein_GI_number: 16801714 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Listeria innocua # 1 326 1 326 327 454 71.0 1e-127 MGEPGFWDNTETAQKLINETNSLKEKYQQFHQLSEELDELTVMFELQQEEYDAEIQEELE ERIHLLQERLTTYELSLLLNEPYDHNNALIELHPGAGGTESQDWGSMLLRMYTRWAESHG FQVETLDYQAGDEAGIKSVTLLIKGYNAYGYLKSEKGVHRLVRISPFDSAKRRHTSFCSV DVMPELDDTIEIAINPDDLKIDTYRASGAGGQHINKTESAVRITHIPTGTVVASQAQRSQ LKNREQAMSMLKAKLYQLEMEKKAQEAASLRGEQMEIGWGSQIRSYVFHPYSMVKDHRTN YETGNVQAVMDGDLDGFIDAYLKQRLS >gi|307679278|gb|GL456449.1| GENE 90 84150 - 84836 357 228 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 215 4 219 223 142 36 2e-32 MIEMKDVMKKYSNGTTAIRNISVEIDQGEFVYVVGPSGAGKSTFIRLMYREEKATKGNLT VAGHDLMKIKNKEVPYLRREIGIVFQDYKLLPKKTVYENVAYAMQVIGRRPREIKKRVME VLDLVGLKHKVRVFPSELSGGEQQRVSIARAIVNTPKVLIADEPTGNLDPENSWEIMKLL DRINAQGTTVVMATHNSTIVNTIRHRVIAIENGRIIRDQVEGEYGYDD >gi|307679278|gb|GL456449.1| GENE 91 84829 - 85713 921 294 aa, chain + ## HITS:1 COG:L2 KEGG:ns NR:ns ## COG: L2 COG2177 # Protein_GI_number: 15672955 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division protein # Organism: Lactococcus lactis # 1 294 1 311 311 310 50.0 2e-84 MIRTFFSHLFESIKSLKRNGWMTVASASAVTITLVLVGIFMGVIFNATKLADDIEKNVTV SVFVDIGTKQNEMKTLEKQLKGLDNVEDISYSNKDQQLKKIQEQMGDAWNLFEGDSNPLY DVYYVRAKTPEDTKDIAKQAAKFPSVFKADYGGVNSDKIFKIAQTVRTWGLAAAALLLFV AVFLISNTIRITILSRQKEIQIMRLVGAKNSFIRWPFFLEGAWIGLIGAIVPVIIMTLGY HQVYNMFNPQLLRSNYSLIRPEDFIWKVNLLMIATGMIIGSLGSVISMRRFLKI >gi|307679278|gb|GL456449.1| GENE 92 85889 - 86743 1112 284 aa, chain + ## HITS:1 COG:SP1400 KEGG:ns NR:ns ## COG: SP1400 COG0226 # Protein_GI_number: 15901254 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 1 282 1 285 292 322 56.0 6e-88 MKKRLLLFIGLASILTLTGCAKWIDRGESITAVGSSALQPLVETASEEYQSQNPGRFINV QGGGSGTGLSQVQSGAVDIGNSDLFAEEKKGIKAEDLIDHKVAVVGITPIVNKNVGVKDI SMENLKKIFLGEVTNWKELGGKDQKIVILNRAAGSGTRATFEKWVLGDKTAIRAQEQDSS GMVRSIVSDTPGAISYTAFSYVTDEVATLSIDGVQPTDENVMNNKWIIWSYEHMYTRKNP SDLTKEFLDFMLSDDIQERVIGQLGYIPVSKMEIERDWQGNVIK >gi|307679278|gb|GL456449.1| GENE 93 86866 - 87786 1065 306 aa, chain + ## HITS:1 COG:SPy1244 KEGG:ns NR:ns ## COG: SPy1244 COG0573 # Protein_GI_number: 15675204 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 2 301 4 303 311 376 74.0 1e-104 MEDVQKKLLTKSKRAKMEQRGKFISFLCIALIVAVVVSIFYFVASKGLATFFKDKINVFD FLFGTNWNPSDIGADGKPMVGALPMIAGSFIVTFLSAIVATPFAIGAAVFMTEISPKKGA KFLQPVIELLVGIPSVVYGFIGLSVIVPFVRSIFGGTGFGILAGTFVLFVMILPTVTTMT VDALKAVPRHYREASLALGATRWQTIYKVVLRAAVPGILTAVVFGMARAFGEALAIQMVI GNAAVMPTSLTTPASTLTSILTMGIGNTIMGTVENNVLWSLALILLLMSLLFNIVIRIIG KRGALK >gi|307679278|gb|GL456449.1| GENE 94 87786 - 88670 901 294 aa, chain + ## HITS:1 COG:SPy1243 KEGG:ns NR:ns ## COG: SPy1243 COG0581 # Protein_GI_number: 15675203 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 1 294 1 294 295 407 72.0 1e-113 MNAKKADKIATGILYAVSGVIVLILAALLIYILARGIPHISWEFLTQPSRAYQVGGGIGI QLFNSLYLLLITMIISIPISLGAGIYLSEYAKKNWLTDLIRTSIEILSSLPSVVVGLFGF LIFVVQIGYGFSILSGALALTFFNLPLLTRNVEESLKAIHYTQREAGLALGLSRWETVKK VILPEALPGILTGVILSSGRIFGEAAALIYTAGQSAPALDFSNWNPLSVSSPISIFRQAE TLAVHIWKINTEGTMPDGAAVSAGASAVLILVVLLFNFGARFIGNRLYKRMTSA >gi|307679278|gb|GL456449.1| GENE 95 88687 - 89496 306 269 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 26 256 5 231 245 122 34 2e-26 MKEYNLNDTHLLQLDSQKDPIALHTEDLHVFYGDNEAIKGVDLQFEKNKITALIGPSGCG KSTYLRSLNRMNDGIANSRVTGKIMYKDVDVNTKEVDVYEMRKRIGMVFQRPNPFSKSIY ENITFALKQHGEKDKKKLDEIVETSLKQAALWDQVKDNLNKSALALSGGQQQRLCIARAI AMKPDILLLDEPASALDPISTGTVEETLVNLKDDYTIIIVTHNMQQAARISDYTAFFYMG KVIEYDHTRKIFTRPKIQATEDYVSGHFG >gi|307679278|gb|GL456449.1| GENE 96 89489 - 90265 287 258 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 1 254 1 263 329 115 28 3e-24 MVRRSKMGKEIISSKDLHLYYGKKEALKGIDLTFNQGELTAMIGPSGCGKSTYLRCLNRM NDLIPDVTITGSVVYKGKDIYGPKTDNVELRKEIGMVFQQPNPFPFSVYENVIYGFRLKG VKDKQVLDEAVETSLKAAAVWEDVKDKLHKSALSLSGGQQQRVCIARVLAVEPDIILLDE PTSALDPVSSGKIENMLLTLKEKYTMIMVTHNMSQASRISDKTAFFLQGDLIEFNDTKKV FLNPKEKQTEDYISGKFG >gi|307679278|gb|GL456449.1| GENE 97 90280 - 90957 811 225 aa, chain + ## HITS:1 COG:SP1395 KEGG:ns NR:ns ## COG: SP1395 COG0704 # Protein_GI_number: 15901249 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate uptake regulator # Organism: Streptococcus pneumoniae TIGR4 # 1 217 1 217 217 234 57.0 9e-62 MLRTQFEEELLNLHNQFYEMGMMVSSAVHKSVKAYINHDKKLAQEVIDRDIEINDMEVKL EKKSFEMIALQQPVTTDLRMIITVMKASSDLERMADHAVSIAKSTIRLKGETRIPEIEKE ISDMSDYVKKMVDNVLIAYVKTDQKDARMIAQMDDRTNEYFDSIYKHAVEAMKANPETVI SGTDYLHVAQYLERIGDYVTNICEWIVYLATGKITELNSNRDEQF >gi|307679278|gb|GL456449.1| GENE 98 91167 - 92768 2046 533 aa, chain + ## HITS:1 COG:lin2630 KEGG:ns NR:ns ## COG: lin2630 COG3595 # Protein_GI_number: 16801692 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 213 530 107 414 416 179 32.0 9e-45 MKERERVLELVKKGILTSEEALILLENMATEKDEKQIEKAAEKVDTQNIGTTNKEDQVAD LMDALEKGESEGPTVDPFEENTQDSAEKDRENLERILDELATKANRASAELDEVNAEIAG IKEEIKEVVEEIGTLDTKEELDALTEDEQVQRKDLHVLLAQLEEKLATQSTKKTALEEEL KNIRKEQWKGQWNDTKEKVSSQFSEEWKDQATDTFNQVGGKVAEVGGQVGEFLKKTFNSF SDTMNDNVEWKDIKMKVPGVATTKFEHEFNYPNPQASLIDVKVANGTVVFKTWDQEDVKV EAKIKLYGKMAGDSPMEAFLERSDIDVDDETISFQVPNKRVKADLTFYLPKRTYDHVSVK LLNGNVLVEELTAKDVYTKSTNGTITFKKIDATMLEIEGVNGEIKVLEGTILDNIIETVN GDVSISAAPESLSVSLINGDIRITAKEKTLRRVEASSANGNIKLALPNDLGVEGQVKTNL GSINSRLTDIEVVREKKDRGNQQLHFRRVLEESMAQINASTTTGSIFLKDTDK >gi|307679278|gb|GL456449.1| GENE 99 92843 - 93166 453 107 aa, chain + ## HITS:1 COG:MA4346 KEGG:ns NR:ns ## COG: MA4346 COG1983 # Protein_GI_number: 20093134 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Putative stress-responsive transcriptional regulator # Organism: Methanosarcina acetivorans str.C2A # 1 61 111 169 183 60 45.0 6e-10 MKRKLTKSPNNVVLTGSLAGIADWLGIDPTIIRVVYVLLSFFSAGFPGILLYIALAVLIP SGRTGSDRGYDHQNPYNRNVRNENPYAANKKQRKEAEKIDDDEWSDF >gi|307679278|gb|GL456449.1| GENE 100 93166 - 93522 273 118 aa, chain + ## HITS:1 COG:no KEGG:EF1751 NR:ns ## KEGG: EF1751 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 118 1 118 118 154 100.0 9e-37 MTYFQRLVVNTLTFISLSVVFPGMIHVRGIMPAIIAAFVLSILNMLVKPVLTILSLPFTL LTFGLFSFVVNAAILQMTSFFVGEMNFGFSSFWAAVLMAVIMSIVNTIVTDHNLSKYE >gi|307679278|gb|GL456449.1| GENE 101 93558 - 94520 906 320 aa, chain - ## HITS:1 COG:CAC3468 KEGG:ns NR:ns ## COG: CAC3468 COG0322 # Protein_GI_number: 15896707 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Clostridium acetobutylicum # 5 138 3 139 373 131 48.0 2e-30 MKEYLKEKAHQLPLTPGVYLMKDATDTIIYVGKAKKLKNRVSSYFINSNQHSRKTMRLVK QIIDFDVLHTDTELDALLLECQLIQQYRPRYNRQMNAYEQYSYVSVAVNERQLEIKLLNI PTKENCFGPYSIRRKLNRLKIILDSIYDLVPTNYWHQTFQKESAIPTELFQQELFDFFHN QGREPIKRIAQQMQEAAEKQAFEKAAKLKEDWLFLTRFANQNQRISQANQRDWQLMWLPC QKKIKYYLIYQGLVVATRVVTKQTFQKYSPLELAKKIMPKKSPKTIEHYSKQQVDFLNIL YGYISRHPECHLENLTIEKA >gi|307679278|gb|GL456449.1| GENE 102 94730 - 95665 1086 311 aa, chain + ## HITS:1 COG:SPy0584 KEGG:ns NR:ns ## COG: SPy0584 COG1493 # Protein_GI_number: 15674671 # Func_class: T Signal transduction mechanisms # Function: Serine kinase of the HPr protein, regulates carbohydrate metabolism # Organism: Streptococcus pyogenes M1 GAS # 1 308 1 306 310 369 61.0 1e-102 MTEVVKIYQLVENLSLEVVYGDEESLNRTIKTGEISRPGLELTGYFNYYSHDRLQLFGSK EITFAERMMPEERLLVMRRLCAKDTPAFIVSRGLEIPEELITAAKENGVSVLRSPISTSR LLGELSSYLDGRLAVRTSVHGVLVDVYGLGVLIQGDSGIGKSETALELIKRGHRLIADDR VDVYQQDELTVVGEPPKILQHLIEIRGIGIIDVMNLFGASAVRGFMQVQLVVYLEAWEKD KKYDRLGSDDAMVEIANVDVPQIRIPVKTGRNVAIIIEVAAMNFRAKTMGYDATKTFEER LTRLIEENSGE >gi|307679278|gb|GL456449.1| GENE 103 95680 - 96516 710 278 aa, chain + ## HITS:1 COG:BS_lgt KEGG:ns NR:ns ## COG: BS_lgt COG0682 # Protein_GI_number: 16080552 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Prolipoprotein diacylglyceryltransferase # Organism: Bacillus subtilis # 6 270 8 266 269 250 50.0 3e-66 MMLAQVNSIAFRLFGIPVYWYAIIIVSGIALAVWLSSREAVRVGLKEDDVFDFMLWGLPA AIVGARLYYVAFQWQDYVDNPIEIFFTRNGGLAIYGGLIGGGLALFFFTRHRFISTWTFL DIAAPSVILAQAIGRWGNFMNHEAYGPATTRQFLENLHLPTFIIDNMNINGTYHQPTFLY ESVWNVLGFIVLVLLRKKPHFLKEGEVFLGYIIWYSFGRFFIEGLRMDSLYAFSNIRVSQ LLSLVMFVAAIVIVIVRRRNPNLKFYNREKQKKKITTS >gi|307679278|gb|GL456449.1| GENE 104 96585 - 97607 1426 340 aa, chain + ## HITS:1 COG:L0016 KEGG:ns NR:ns ## COG: L0016 COG0240 # Protein_GI_number: 15673320 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Lactococcus lactis # 3 336 4 337 341 440 67.0 1e-123 MKQKVAVLGPGSWGTALAQVLAENGHEVCIWGNKPEQIDEINTKHTNKHYLPELILPTSI QATTDLATALVDVDAVLFVVPTKAIRSVAQEVAQHLKTKPIIIHASKGLEQGTHKRISEV IAEEIPAEKRQGIVVLSGPSHAEEVAVHDITTITAASENLADAVYVQELFMNDYFRIYTN DDVIGVETGAALKNIIALGAGAIHGLGFGDNAKAAIMTRGLAEISRLGVAMGANPLTFIG LSGVGDLIVTCTSVHSRNWRAGNLLGKGHKLDEVLENMGMIVEGVSTTKAAYELAQQLEV EMPITETIYNVLYNDEDVQQAAKEIMLRDGKTENEFTLDF >gi|307679278|gb|GL456449.1| GENE 105 97619 - 98515 1238 298 aa, chain + ## HITS:1 COG:SP2092 KEGG:ns NR:ns ## COG: SP2092 COG1210 # Protein_GI_number: 15901907 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Streptococcus pneumoniae TIGR4 # 2 293 4 299 299 457 80.0 1e-128 MKVKKAVIPAAGLGTRFLPATKAMAKEMLPIVDKPTIQFIVEEALASGIEDILIVTGKAK RPIEDHFDSNVELENNLKEKNKTDLLKLVEETTDVNLHFIRQSHPKGLGHAVLQAKAFVG NEPFVVMLGDDLMEDKVPLTKQLMDDYEQTHASTIAVMKVPHEDTSKYGIINPEKEIEKG LYNVENFVEKPKPEEAPSDLAIIGRYLLTPEIFDVLENQKPGAGNEIQLTDAIDTLNKTQ RVFAREFKGERYDVGDKFGFMKTSIEYGLTHPEVKDNLREYIINLGAQLAKKEQPKEK >gi|307679278|gb|GL456449.1| GENE 106 98693 - 99124 586 143 aa, chain + ## HITS:1 COG:SPy0587 KEGG:ns NR:ns ## COG: SPy0587 COG4768 # Protein_GI_number: 15674673 # Func_class: R General function prediction only # Function: Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain # Organism: Streptococcus pyogenes M1 GAS # 6 140 6 133 135 93 48.0 1e-19 MSGGEIAALIAAVAFVVLVIFLVLVLYKVSQVVSKIEDTIDETNTTIKVVTSDVNVLSRQ VEGLLVKSNELLTDVNQKVATIDPLFTAVADLSESVSELNTSSKHLITKVGTVGKSTAKA GLVSKVGGSAFRAMRSKNKKTNN >gi|307679278|gb|GL456449.1| GENE 107 99140 - 99727 1106 195 aa, chain + ## HITS:1 COG:BH3244 KEGG:ns NR:ns ## COG: BH3244 COG4980 # Protein_GI_number: 15615806 # Func_class: R General function prediction only # Function: Gas vesicle protein # Organism: Bacillus halodurans # 7 130 9 136 140 62 37.0 6e-10 MAKKGGFFLGAVIGGTAAAVAALLLAPKSGKELRDDLSNQTDDLKNKAQDYTDYAVQKGT ELTEIAKQKAGVLSDQASDLAGSVKEKTKDSLDKAQGVSGDMLDNFKKQTGDLSDQFKKA ADDAQDHAEDLGEIAEDAAEDIYIDVKDSAAAAKETVSAGVDEAKETTKDVPEKAAEAKE DVKDAAKDVKKEFKG >gi|307679278|gb|GL456449.1| GENE 108 99848 - 100951 1315 367 aa, chain - ## HITS:1 COG:lin1613 KEGG:ns NR:ns ## COG: lin1613 COG0006 # Protein_GI_number: 16800681 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Listeria innocua # 3 367 2 365 365 389 52.0 1e-108 MNQEKIADLKNWMHQEKIDFTYISDPGHIAYFSGYESEPHERVLALFIAADDQSFLFTPA LEVEDAEKSSWTYPVYGYLDSENPWEKIAALLNKRTQGTPRFALEKQALSLARFDQLKTY FPASDFSHDVTPLIEKLQLIKTEPEIQRLLEAGSWADVAFEIGFKAIQAGVAEQEIVAEI EYQLKRQGIRSMSFDTLVLTGKNGASPHGVPGETKIEPHDLVLFDLGVVHNGYCSDATRT VSYLEPSDFQKEIYGIVLEAQLAATEAVKPGVTAGELDDIARGVITKAGYGEYFNHRLGH GIGTTVHEYPSLVHGNDLVIEEGMCFSIEPGIYIPGKVGVRIEDCLHVTKTGSEPFTKTT KELQIIQ >gi|307679278|gb|GL456449.1| GENE 109 101166 - 102167 1278 333 aa, chain + ## HITS:1 COG:SPy0514 KEGG:ns NR:ns ## COG: SPy0514 COG1609 # Protein_GI_number: 15674618 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 6 333 7 333 333 410 67.0 1e-114 MEKQTITIYDVAREANVSMATVSRVVNGNPNVKPATRKKVLEVIDRLDYRPNAVARGLAS KKTTTVGVIIPDVSNAFFASLARGIDDVATMYKYNIILANSDGDDQKEVTVLNNLLAKQV DGIIFMGHRITDDIRGEFSRSKTPVVLAGSIDPDEQVGSVNIDYTEATKDATATLAKNGN KKIAFVSGALIDPINGQNRMKGYKEALAENGLSYNEGLVFESEYKFKAGINLAERVRNSG ATAAFVTDDELAIGLLDGMLDAGVKVPEEFEIITSNNSLLTEVSRPRLSSITQPLYDIGA VSMRLLTKLMNKEEIEEKTVVLPYGIDQKGSTK >gi|307679278|gb|GL456449.1| GENE 110 102354 - 103049 197 231 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 224 4 233 305 80 25 8e-14 SMKVKELTVEYGNRTIIENLSMQAEFGEIIGLVAPNGTGKTTFFKAISGLIPRKNGNISL NKIDYNSRSATYLKELFFLESSKNLYDYLTPKEHLEYIKAAWKSNSDIEHIFEQLKMKEY QNRTIKKLSLGMKQHVLLAMYLASDATILLLDEPFNGLDPTSVSLFIMCLKEIVYKDKIV ILSSHDLYNVEHTCTRILFMKNKKLVENDQRNLSLREQYDNLYLRGEERNA >gi|307679278|gb|GL456449.1| GENE 111 103042 - 104142 580 366 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229545648|ref|ZP_04434373.1| ## NR: gi|229545648|ref|ZP_04434373.1| ABC superfamily ATP binding cassette, membrane protein [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] conserved hypothetical protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis HIP11704] hypothetical protein HMPREF9514_01815 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9521_01427 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9509_02120 [Enterococcus faecalis TX0411] ABC superfamily ATP binding cassette, membrane protein [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] conserved hypothetical protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis HIP11704] hypothetical protein HMPREF9509_02120 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9521_01427 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9514_01815 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9496_01600 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9500_02138 [Enterococcus faecalis TX0017] hypothetical protein HMPREF9495_01209 [Enterococcus faecalis TX2141] # 1 366 1 366 366 633 100.0 1e-180 MLKIETIKILKEKSLWFVFIAFILMLIYPLLAQPQQLSFKEMQYENRIKNNEQAKGKMKN EPAAKETLNEIEDESEQLRKAINAIKIGDEWALLEAEKKLEESNLNAMLKGTLYSIPIIE QQKRVKELQYLSENRIKQVDSSEVAKMPALNYLGFLLSMDFPYTLLLIIPSLMIIALATL EKRKNTVSLWNGLPLKLWKKYSIKISSILFTVGLVSYLSIFLSVISAFFKNGLGNPDYPV AIIEKGQSVTIISLSNYLSRSLIMFGMLLLALTVFSFLLSLFTGNLIVHSLLIVGVVLSS GVSLISNKFFFTAYMNFPKIINGGNGYEPMDEIGLTFDFSLKMIVVYVLISLIVSAIVLR NRKGLF >gi|307679278|gb|GL456449.1| GENE 112 104328 - 106706 2290 792 aa, chain - ## HITS:1 COG:SPy0097 KEGG:ns NR:ns ## COG: SPy0097 COG0744 # Protein_GI_number: 15674320 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Streptococcus pyogenes M1 GAS # 27 774 28 768 770 712 50.0 0 MKNNSSNNKQKPTTSSGGNVFLLILNVIIRVFQSLVVFGVILIVLGGSLGLGIGMGYFAF LVEDTQPPTKEELQKEISDITEVSKMTYADGTPIANIKSDLIRTRINGDQMSPLLKKAII STEDEYFEEHHGVVPKALVRALISDATGIGGSSGGSTLTQQLVKQQILTDETTFKRKANE ILLALRIEKYFSKDEIVTTYLNVSPFGRNNKGENIAGVEEAAKGLFGKSAKDLNLPQAAF IAGLPQSPIVYTPYTNTGALKDDLSLGMKRKDFVLFSMYREKAISQKEYEEAKAYDLKKD FLPTEQANVNTEGYLYYTVLDKAVEIVMDLDMKKAKVNRDDLDQVGLDQYEEQARREIQS QGYTIQSTIDQNIYNTMQTAVANYGYLLDDGTADVNGNTMIETGNILMDNATGRILGFIG GRNFDINQNNHAFNADRQVGSTIKPISVYGPAIDQGLIGSESRLANYPTTYADGREFVNS TTVDLNQFVTVRNALNWSFNIPVVHVNNELRKKMGDDNFSYNHYLSKMNYPASDAWAYES APLGPVETNVVTQTNGFQALANKGKYQKAYMIEKITDNSGHVVYEHKDEGTQVYSPATAS IMNDLLRSVVDSANTTKFKPTLAGLNPHLASADWVGKTGTTDEFKDSWLIVSTPTVTLSS WTGHDLPAPMTTTSGDNNGNYMANLANALYYANPELFGIGQKFELDPSVIKSKVSEFTGE KPGSITYNGAKFNTPGKTTTSYYAKDGAPQSTYKFGIGGTDSNYASYWGNLAPRATTNNN NNNKNNDNKKNN >gi|307679278|gb|GL456449.1| GENE 113 106918 - 108180 727 420 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 3 419 7 415 418 284 39 3e-75 MNSAFFEELKARGLVYQVTDEEALQKQLNEESVKLYIGFDPTADSLHIGHLLPILMLRRF QQNGHVPIALVGGGTGMIGDPSFKDAERSLNTLDTVKAWSESIKGQLSRFIDFEDEKNPA ILANNYDWLGELSLIDFLRDVGKNFTINYMMSKESVKRRIETGISYTEFAYQLLQAYDFL KLYETEGCLLQLGGSDQWGNITSGIELLRREQEVQGFGLTMPLITKADGTKFGKTEGNAV WLDAEKTSPYEFYQFWINTDDRDVVKFLKYFTFLTLDEIATIEEEFTANPGQRAAQKALA KEVTTLVHGEAAYHQAVKISEALFSGDIQSLTAEEIKQGFKDVPTYEVQPEDQLSLVDLL VTSKIEPSKRQAREDVQNGAIYVNGERRQDLAAELTETDKIEGQFTVIRRGKKKYFLLKY >gi|307679278|gb|GL456449.1| GENE 114 108361 - 109023 644 220 aa, chain + ## HITS:1 COG:no KEGG:EF1738 NR:ns ## KEGG: EF1738 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 220 1 220 220 376 99.0 1e-103 MKSIVEKLNLTKYQQLVILNRPQGEYLSEFASAAQQLPSEPVELIFAFVKTMAEFQEIVS MVIEGQHLVENGLLYVAYPKKGNKMYPTFVHRDEIFPTLQVNETDGYIKGSTLKFNRMVS LDETFTVVGMKNVLKKPAKNQTSSAVGDYVQYLPEIEALVQTEPAAAATFAALTPGYQKE WARYVFSAKRAETRKKRQTEMLVILKEGYKTKALYQQRKK >gi|307679278|gb|GL456449.1| GENE 115 109023 - 109490 424 155 aa, chain + ## HITS:1 COG:no KEGG:EF1737 NR:ns ## KEGG: EF1737 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 155 1 155 155 295 98.0 3e-79 MGQSIETVTAYIETVEPKWRIAYQQVLDAVSQNLPAGFELTMQYGMPTFVVPLSVFPEGY LNRGDEPLPFISLGATKRQVALYHMGLMGNEAVRSWFQEAYQEQVSTKLNMGKSCLRFTN PKRIPYELIGELVTKITLEEWLQQYQHYQKKKKNY >gi|307679278|gb|GL456449.1| GENE 116 109501 - 110394 1116 297 aa, chain + ## HITS:1 COG:lin1487 KEGG:ns NR:ns ## COG: lin1487 COG0648 # Protein_GI_number: 16800555 # Func_class: L Replication, recombination and repair # Function: Endonuclease IV # Organism: Listeria innocua # 3 294 4 295 297 432 72.0 1e-121 MLLGSHVSMSGKKMLLGSAEEAASYGSTTFMIYTGAPQNTRRKPIEEMNIEAGQAFMKEH NLSNIVVHAPYIINLGNTIKTENFGFAVDFLRQEIERAQALGATQITLHPGAHVGAGPEA GIKQIVKGLNEVLWKEQIPQIALETMAGKGTEIGRTFDELAAIIDGVTLNDKLSVTLDTC HINDAGYNVKDDFDGVLVEFDKIIGLDRLKVIHVNDSKNPMGSHKDRHANIGFGTIGFEA LNGVVHHEKLTALPKILETPYVGEDKKNKKAPYGFEIAMLKNQTFDPELLEKIQGQN >gi|307679278|gb|GL456449.1| GENE 117 110589 - 110807 355 72 aa, chain + ## HITS:1 COG:BS_yneF KEGG:ns NR:ns ## COG: BS_yneF COG3763 # Protein_GI_number: 16078854 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 3 72 2 72 72 67 64.0 9e-12 MATGWVVLIAVIALLVGAAGGFFLARKYMQDYFKKNPPVNEDMLRMMMASMGQKPSEKKV RQMMQQMKNQGK >gi|307679278|gb|GL456449.1| GENE 118 111005 - 112756 200 583 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 353 558 17 226 245 81 29 3e-14 MSIFKKLGWFFKQEKKSYIIGVFSLMMVALVQLVPPKVIGVVVDEIVNKEIRLTKIIVWV ALLIGAGLAQYLFRYIWRMHIWGSAARLEKELRTQLFHHFTKMDSIFYQKYRTGDLMAHA TNDLNAIQNVAGAGILTFADSVITGGTTIIAMVLFVDWRLTLIALLPLPLLAVTSRVLGS KLHDAFRDSQAAFSAINDKTQESITGIKVIKTFGQEKEDLADFTEKIDDAIVKNKRTNFL DALFDPFITLIIGVSYVLTIIIGGRFIMEGTISLGQLVSFIAYIGMLVWPMFAIGRLFNV LERGNASYDRVNELLHEKTHIIERKDAIKTMAQGTISMKIDSFSYPKEEAVALENIQFSL QEGETLGIVGKTGAGKTTILKLLMREYDQYQGTISFGKHNIKNYTLDALMGAMGYVPQDH FLFSMTVRDNIRFAKPDLEQAAVEQAAALAFINQEIKAFPEGYDTMVGERGVSLSGGQKQ RISIARALIVEPELLILDDALSAVDAKTEEAILSNLKETRQEKTTIITAHRLSSVMHAKE ILVLDEGKIIERGTHPELLAQKGWYQRMWEKQQLEAKIEGSES >gi|307679278|gb|GL456449.1| GENE 119 112756 - 114540 191 594 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 355 579 12 233 318 78 27 4e-13 MEEKYQSEWSRELPMKEQLTIVQRLFRFAKPFRRMFYTAILFAFGLSIINILLPRVIQVF MDNYLTPKTATMQVILTFAAIYFFGVIVKSIVWFFQWYLYSMASLKTYQYIRVKLFEKLH TLGMRYFDQTPAGSTVSRVTNDTETLFEFWYVFLMVITGIFAVISSFFAMFQLSPEISFY CLIFLPILLVVIWYYQKFSSKLYRSMREKLSQLNTKLNEYISGMQIIQQFRQEKRLEKEF EETNDDYLKTRVAMIRMNSLLLSPIINLLYTLAIALALTMFGIDALHSPVEAGMIYAFVT YVQAFFNPMTQMMDFLSIFTDGIVAGSRILKIMDTEELTPQQSVGANGEIIRGKIEFRNV TFSYDGKNEVLKNISFVANPGETVALVGHTGSGKSSIINVLMRFYEFYEGQILIDDRDIR DFPMTELREKMGLVLQDAFMFYGDIAGNIRLLNPTITDEQIKQAAEFVQADKFIHTLPNT YHAKVIERGASYSSGQRQLISFARTIVTDPKILVLDEATANIDTETEGLIQEGLAKMRQG RTTIAIAHRLSTIRDANLILVLDKGQIVERGTHETLLAEGGLYADMYQLQSTEV >gi|307679278|gb|GL456449.1| GENE 120 114657 - 115457 580 266 aa, chain + ## HITS:1 COG:lin0494 KEGG:ns NR:ns ## COG: lin0494 COG0710 # Protein_GI_number: 16799569 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate dehydratase # Organism: Listeria innocua # 17 259 4 245 252 233 50.0 4e-61 MKREKQTRKLGGTVKPVIVKNVRIGEGNPKIVVPIVAPTAEDILAEATASQTLDCDLVEW RLDYYENVADFSDVCNLSQQVMERLGQKPLLLTFRTQKEGGEMAFSEENYFALYHELVKK GALDLLDIELFANPLAADTLIHEAKKMGIKIVLCNHDFQKTPSQEEIVARLRQMQMRQAD ICKIAVMPQDATDVLTLLSATNEMYTHYASVPIVTMSMGQLGMISRVTGQLFGSALTFGS AQQASAPGQLSVQVLRNYLKTFEQNK >gi|307679278|gb|GL456449.1| GENE 121 115475 - 115969 658 164 aa, chain + ## HITS:1 COG:lin0783 KEGG:ns NR:ns ## COG: lin0783 COG2606 # Protein_GI_number: 16799857 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 8 161 3 156 158 161 53.0 5e-40 MAKKKTQQKTNAMRMVEQHKVPYKEYEFAWSEDHLSAESVAESLGIEKGRIFKTLVTVGN KTGPVVAVIPGNQELDLKKLAKASGNKKVEMLHLKDLETTTGYIRGGCSPIGMKKQFPTY LAEEAQQYSAIIVSAGKRGMQIELAPEAILSLTNGQFAEITTKE >gi|307679278|gb|GL456449.1| GENE 122 116034 - 116117 60 27 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEFLLHVFNYQINKGKALSKQCYFLLE >gi|307679278|gb|GL456449.1| GENE 123 116099 - 116506 443 135 aa, chain - ## HITS:1 COG:BS_ypdQ KEGG:ns NR:ns ## COG: BS_ypdQ COG0328 # Protein_GI_number: 16079258 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HI # Organism: Bacillus subtilis # 4 128 5 127 132 100 40.0 7e-22 MLRIYVDAATKGNPGESGGGIVYLTDQSRQQLHVPLGIVSNHEAEFKVLIEALKQAIANE DNQQTVLLHSDSKIVVQTIEKNYAKNEKYQPYLAEYQQLEKNFPLLLIKWLPESQNKAAD MLARQALQKFYSNKK >gi|307679278|gb|GL456449.1| GENE 124 116607 - 117068 302 153 aa, chain + ## HITS:1 COG:no KEGG:EF1727 NR:ns ## KEGG: EF1727 # Name: ebsA # Def: EbsA protein # Organism: E.faecalis # Pathway: not_defined # 1 153 1 153 153 273 99.0 1e-72 MKKQKFYWQPELASTIIYWSCTFCILFISLILALENNGPYLISNLVMVPFFVFAYLGIAR SFNMTETSLIVRDVLWFRKKALPLSQIEKVTYNEKSIEIFSSEFKEGSKVFLMKKKTIPL FLEALKIKKPELKVAEDHSLGLHKKEEKNKSES >gi|307679278|gb|GL456449.1| GENE 125 117173 - 117379 236 68 aa, chain - ## HITS:1 COG:lin1992 KEGG:ns NR:ns ## COG: lin1992 COG1278 # Protein_GI_number: 16801058 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Listeria innocua # 1 65 1 65 66 80 66.0 7e-16 MQKGIVKWFDNRKGYGFIVYNEEDEIFVHFTAIEGDGFKSLDENQSVEFEIMEGNRGLQA AHVKKIDN >gi|307679278|gb|GL456449.1| GENE 126 117558 - 119228 2216 556 aa, chain + ## HITS:1 COG:SP1229 KEGG:ns NR:ns ## COG: SP1229 COG2759 # Protein_GI_number: 15901091 # Func_class: F Nucleotide transport and metabolism # Function: Formyltetrahydrofolate synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 556 1 556 556 769 69.0 0 MKTDINIAQAATLKPIQEIAETIGLSEDSLELYGKYKAKIDFPTLQSLEAQPEGKLILVT SINPTPAGEGKSTVTIGLGDALNQINKKTVIALREPSLGPVMGIKGGATGGGYAQVLPME EINLHFTGDMHAITTANNALAALLDNHLQQGNELKIDSRRVIWKRAVDLNDRALRQVVVG LGGPFQGVPREDGFDITVASEIMAILCLAQNLTDLKERLSRIIVAYNDQREPVTVKDLNV AGALTLLLKDALKPNLVQTIEGTPAFVHGGPFANIAHGCNSILATKTALHLGDYVVTEAG FGGDLGGEKFLDIKVPSLGKAPDAVVIVATIRALKMHGGLAKDQLAEENLPALQKGFTNL EKHIQNMQRYDVPVVVAINEFTQDTEKEIQLLKEACQALGVPVELTSVWAQGGAGGTNLA KTVVAEIEANTKQFQPLYNPRQTIEEKIQAIVQTIYGGEQAIFSPKAQKQIADFTKNGWD QLPICMAKTQYSLSDDPQKLGRPEGFTITIRELVPKIGAGFIVALTGDILTMPGLPKVPA ALNMDVDETGQASGLF >gi|307679278|gb|GL456449.1| GENE 127 119333 - 120037 724 234 aa, chain + ## HITS:1 COG:no KEGG:EF1724 NR:ns ## KEGG: EF1724 # Name: not_defined # Def: CBS domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 234 1 234 234 432 100.0 1e-120 MGERADTFLAHFNRIEKWMRERLNNPVNMGFSEMTRRLSRKEKGQIAQFEEDLLQMAQLR NAIVHERIADDFVIAEPNEWAVQRIETIEQALTKPEKVVPKFAKRVTAFEITTSLETLLT IIAKKQYSQFPIYEKGVFKGLITVRGIGVWFAIESTKGEVHIANRTVRELLASNYKRSNY QFVSIEATVFEVEQMFREQPRLEAVLISKSGHPNGELVGIVRPRDLASIHREKE >gi|307679278|gb|GL456449.1| GENE 128 120043 - 120519 530 158 aa, chain + ## HITS:1 COG:SP0928 KEGG:ns NR:ns ## COG: SP0928 COG0597 # Protein_GI_number: 15900808 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Streptococcus pneumoniae TIGR4 # 7 147 9 149 153 125 50.0 3e-29 MLVVYFLISALLVGLDQWSKYLTVQNISLGETKEFIPGFLSLTHLRNTGAAWSLLEGKMI FFYVITVIVSVVIIYLLIKNYKKSIWYSVGLSFVLAGAIGNFIDRVRLGYVVDMLQTDFM NFPIFNVADSTLVVGVICIFIYLILDEKAAKEGKNGTN >gi|307679278|gb|GL456449.1| GENE 129 120506 - 121411 350 301 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 37 285 38 279 285 139 35 1e-31 MEQINVTIQTEKGRIDKVLSEHLPNHSRSQIQQWLKEKHVTVNGETVRANYKVTAGDEIV VTIPEPEALDMVAEDIPLTIVYEDNDVIVVNKPQGMVVHPSAGHPKGTLVNALLHHADHL SAINDVVRPGIVHRIDKDTSGLLMVAKNDQAHESLAKQLKEKTSLRKYVALVHGVIPHDK GEINAPIGRSKVDRKMQAVIEGGKEAVTHFTVLERFDAFTLVELQLETGRTHQIRVHMKY IGYPLAGDPLYGPKKTLPGNGQFLHAKLLGFTHPTTGEQLVFEAPLPEVFEKTLHQLRNN H >gi|307679278|gb|GL456449.1| GENE 130 121753 - 122289 854 178 aa, chain + ## HITS:1 COG:BH2541 KEGG:ns NR:ns ## COG: BH2541 COG2065 # Protein_GI_number: 15615104 # Func_class: F Nucleotide transport and metabolism # Function: Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase # Organism: Bacillus halodurans # 6 175 5 177 180 199 63.0 2e-51 MPKKEVVDAVTMKRALTRISYEIIERNKGIQDIVLVGIKTRGIYIAQRLAERLKQLEDID VPVGELDITLYRDDVKDMEEPELHSSDVPVSIEGKEVILVDDVLYTGRTIRAAMDAVMDL GRPRKISLAVLVDRGHRELPIRADYVGKNIPTSKTEEIIVEMEERDGADRIMISKGNE >gi|307679278|gb|GL456449.1| GENE 131 122306 - 123586 1069 426 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 13 426 5 427 447 416 49 1e-115 MSEKEFRNEDAVLDIKDRPQAFHWVGLSLQHLFTMFGATVLVPILVGIDPGIALVSSGLG TMVYLITTKGKIPAYLGSSFAFIAAMQMLMKSDGYPAIAQGAMTTGLVYLIVSLIIKKIG SDWLDKILPPIVVGPVVMVIGLGLAANAANNAMYNNNVYDFKYIAVALITLGLTIFYNMF FKGFLGLIPILLGIVSGYLVALAFGIIDLTPIKEAAWFALPNFEVPFVQYQPKLYLNAIT TMAPIAFVTMTEHIGHLMVLNKLTKRNFFQDPGLSKTLMGDGLAQIVAGFVGGPPVTSYG ENIGVLAITRVHSVFVIGGAAVFAVALGFVGKLSALILSIPGPVISGISFVLFGVIAASG LKILIDNKINFDKKKNLLIASVILVIGIGGLVFKVGTFELSSMALATVLGIVLNLILPEN ARSEEQ >gi|307679278|gb|GL456449.1| GENE 132 123600 - 124526 1137 308 aa, chain + ## HITS:1 COG:SPy0832 KEGG:ns NR:ns ## COG: SPy0832 COG0540 # Protein_GI_number: 15674868 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, catalytic chain # Organism: Streptococcus pyogenes M1 GAS # 1 307 1 307 311 424 65.0 1e-118 MIITSERISLKHLLTAEALTDREVMGLIRRAGEFKQGAKWHPEERQYFATNLFFENSTRT HKSFEVAEKKLGLEVIEFEASRSSVQKGETLYDTVLTMSAIGVDVAVIRHGKENYYDELI QSKTIQCSIINGGDGSGQHPTQCLLDLMTIYEEFGGFEGLKVAIVGDITHSRVAKSNMQL LNRLGAEIYFSGPEEWYDHQFDVYGQYVPLDEIVEKVDVMMLLRVQHERHDGKESFSKEG YHLEYGLTNERATRLQKHAIIMHPAPVNRDVELADELVESLQSRIVAQMSNGVFMRMAIL EAILHGKA >gi|307679278|gb|GL456449.1| GENE 133 124535 - 125818 1562 427 aa, chain + ## HITS:1 COG:BH2538 KEGG:ns NR:ns ## COG: BH2538 COG0044 # Protein_GI_number: 15615101 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Bacillus halodurans # 1 425 1 424 428 480 59.0 1e-135 MKTLIKNGKIIKKENQLIEAALWLENGVIHAIGESFDEADFEQVFDAKGQLITPGLVDVH VHFREPGFTYKETIKTGSKAAARGGFTTVCAMPNLNPVPDTAEKLSEVYDLIQKDAVVKV LQYAPITEELRSEVLTNQKALKEAGAFAFTNDGVGVQTAGTMYLAMKEAAALNMALVAHT EDESLLFGGVMHEGEVSKKLGLPGILSATEASQIARDITLAKETGVHYHVCHVSTEESVR VIRDAKKAGIHVTAEVSPHHLILVDEDIPGDEGFWKMNPPLRGLADRQALIDGLLDGTID CIATDHAPHGLEEKQQSFLNAPFGIVGSETAFQLIYTNFVETGIFTLEQVIDWMAVKPAE IFGLNAGTLTIGAPADIAVFDLATAAPIDAEAFESMAVNTPFTGWTVKGKTLMTFVDGAL AWSEEAQ >gi|307679278|gb|GL456449.1| GENE 134 125821 - 126900 1079 359 aa, chain + ## HITS:1 COG:SPy0833 KEGG:ns NR:ns ## COG: SPy0833 COG0505 # Protein_GI_number: 15674869 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Streptococcus pyogenes M1 GAS # 2 356 3 356 360 565 70.0 1e-161 MKRLLILEDGTVFEGKAFGAEGNVVGEVVFTTGMTGYQEAITDQSFNGQMITFTYPLVGN YGVNRDDYESIAPTCKGVIVKEHARVASNWRQQMTLDEFLKRKGIPGISGIDTRALTRKL RSAGTMKGSIIDAVDDLPHAFDQLKATVMPKNQVAQVSTTKPYPSPGIGRNVVVVDFGLK HSILRELSKRQCNLTVLPYNTTAEEILELSPDGVMLTNGPGDPKDVPEAIEMIQEIQGKV PIFGICLGHQLFSLANGADTYKMKFGHRGLNHPVREIATGRIDFTSQNHGYAVDEATIDP EKLLVTHVEVNDGTVEGVRHRDYPAFTVQYHPDAAPGPHDGLHLFDEFMELMDAWKEQN >gi|307679278|gb|GL456449.1| GENE 135 126900 - 130082 3881 1060 aa, chain + ## HITS:1 COG:SP1275 KEGG:ns NR:ns ## COG: SP1275 COG0458 # Protein_GI_number: 15901135 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Streptococcus pneumoniae TIGR4 # 1 1060 1 1058 1058 1681 80.0 0 MPKRTDIKKIMVIGSGPIIIGQAAEFDYAGTQACLALKEEGYEVVLVNSNPATIMTDKEI ADHVYIEPITLEFVSRILRKERPDALLPTLGGQTGLNMAMELSESGILDELNVELLGTKL SAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQAVAFAKRIGYPIIVRPAFTLGGTGGG MCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKEIEYEVMRDSADNAIVVCNMENFDPV GIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIRALKIEGGCNVQLALDPHSFNYYVIEVN PRVSRSSALASKATGYPIAKLAAKIAVGLTLDEMKNPVTGTTYAEFEPALDYVVSKIPRW PFDKFEKGARELGTQMKATGEVMAIGRNIEESLLKAVRSLEIGAYHNELAELSHVSDLEL TKKMVHAQDDRLFYLSEAIRRGYSIEELQSLTKIDLFFLDKLLHIIEIETTLESHVDNVA ILKEAKQNGFSDRKIAALWGQTEQAIADFRRANQIVPVYKMVDTCAAEFESHTPYFYSTY EVENESNVSKKPSVLVLGSGPIRIGQGVEFDYATVHSVKAIQAAGYEAIIMNSNPETVST DFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQTAINLAEPLTKQGVKILGTTIED LDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPSYVLGGRAMEIV ENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGIMEHIERAGVHS GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHENRVYVIEVNPRASRT VPFLSKITGIPMAQVATKAILGEKLTDLGYQDGLYPESKQVHVKAPVFSFTKLQKVDTYL GPEMKSTGEVMGSDYYLEKALYKAFEASGLHLPSYGAVLFTIADETKEEALEIAKRFSAI GYSLVATEGTADFLAKHQLPVKKVTKISNPEGETVLDVIRNGNAQVVINTMDKNRSSANQ DGFSIRREAVEHGIPLFTSLDTTNAILKVLESRAFTTEAI >gi|307679278|gb|GL456449.1| GENE 136 130190 - 130981 852 263 aa, chain + ## HITS:1 COG:SP0963 KEGG:ns NR:ns ## COG: SP0963 COG0543 # Protein_GI_number: 15900840 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases # Organism: Streptococcus pneumoniae TIGR4 # 8 263 1 250 250 263 48.0 2e-70 MQRKQEMMTIVAQKQLAPRIYQLDLQGELVKEMTRPGQFVHIKVPRADLLLRRPISINQI DHSNETCRLIYRVEGAGTEVFATMKAGEQLDILGPLGNGFDITTVAAGQTAFIVGGGIGI PPLYELSKQLNEKGVKVIHFLGYASKEAAYYQQEFMALGETHFATDDGSFGAHGNVGRLL SEALAKGRIPDAVYACGANGMLKAIDSLFPTHPHVYLSLEERMACGIGACYACVCHKKGD TTGAKSVKVCDEGPIFKASEVIL >gi|307679278|gb|GL456449.1| GENE 137 130978 - 131916 996 312 aa, chain + ## HITS:1 COG:L182555 KEGG:ns NR:ns ## COG: L182555 COG0167 # Protein_GI_number: 15673328 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Lactococcus lactis # 4 309 5 311 311 443 73.0 1e-124 MMKNPLAVSIPGLTLKNPIIPASGCFGFGEEYANYYDLDQLGSIMIKATTPQARYGNPTP RVAETPSGMLNAIGLQNPGLDVVMQEKLPKLEKYPNLPIIANVAGACEEDYVAVCAKIGQ APNVKAIELNISCPNVKHGGIAFGTDPDIAFQLTQAVKKVASVPIYVKLSPNVTDIVPIA QAIEAGGADGFSMINTLLGMRIDLKTRKPILANQTGGLSGPAIKPVAIRLIRQVASVSQL PIIGMGGVQTVDDVLEMFMAGASAVGVGTANFTDPYICPKLIDGLPKRMEELGIESLEQL IKEVREGQQNAR >gi|307679278|gb|GL456449.1| GENE 138 131906 - 132619 891 237 aa, chain + ## HITS:1 COG:L181692 KEGG:ns NR:ns ## COG: L181692 COG0284 # Protein_GI_number: 15673327 # Func_class: F Nucleotide transport and metabolism # Function: Orotidine-5'-phosphate decarboxylase # Organism: Lactococcus lactis # 3 235 4 236 237 284 62.0 9e-77 MHDRPIIALDFPTQKEVAVFLEKFPKEEALFVKVGMELFYAEGPAIVRWLKEQGHDVFLD LKLHDIPNTVEKAMTNLAKLGVAITNVHAAGGVRMMQAAKEGLIKGTQPGAKVPELIAVT QLTSTSEEEMHHDQLINVPLETSVIHYAKCAEKAGLDGVVCSALEARGIQEATKQTFICL TPGIRPAGSAVGDQQRVVTPQHAREIGSTYIVVGRPITQAENPYEAYQEIKKDWSGK >gi|307679278|gb|GL456449.1| GENE 139 132621 - 133253 857 210 aa, chain + ## HITS:1 COG:lin1945 KEGG:ns NR:ns ## COG: lin1945 COG0461 # Protein_GI_number: 16801011 # Func_class: F Nucleotide transport and metabolism # Function: Orotate phosphoribosyltransferase # Organism: Listeria innocua # 4 210 3 209 209 272 66.0 3e-73 MTKVAKKIAKDLLDIEAVFLNPNEPFTWASGIKSPIYCDNRITMSYPAVRKEIAEGLAAK IKETFPEVEVIAGTATAGIPHAAWVADILGLPMVYIRSKAKDHGKGNQIEGRISEGQKMV VIEDLISTGGSVLEAAEAAEREGATVLGVAAIFTYELPKGTANFADKQMTLLTLTNYSTL IDAALEANYIEEKDVTLLQEWKKDPENWGK >gi|307679278|gb|GL456449.1| GENE 140 133451 - 134149 459 232 aa, chain + ## HITS:1 COG:BH0360 KEGG:ns NR:ns ## COG: BH0360 COG3338 # Protein_GI_number: 15612923 # Func_class: P Inorganic ion transport and metabolism # Function: Carbonic anhydrase # Organism: Bacillus halodurans # 8 228 47 270 275 126 34.0 4e-29 MKKIKNMDVEWSYTGNDGPEHWHTLCDWFAEGAKFAYQSPIALEKESAETVNSQITFHYK KEEFTEKEFKNTFHFVPPNTESYVMFENVAYHLTDIHFHMPSEHLLSGKQYPLEFHLVHM NDAGENLVVGCLFTITEEENRFSEANHPMDWENGTHQQWFNPSIFLPEERLHYHYVGSLT TPPTKGPVKWFVFDTIQKMDQAFLNKIKEGMLAFNNRPLQPLNGRKIYFSND >gi|307679278|gb|GL456449.1| GENE 141 134168 - 135097 875 309 aa, chain + ## HITS:1 COG:SPy0824 KEGG:ns NR:ns ## COG: SPy0824 COG0583 # Protein_GI_number: 15674863 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 1 298 1 298 304 230 41.0 2e-60 MNIQQMKYVAAIANNGSFREAAKKLFITQPSLSNSIRELEEELGISLFLRTNKGAFLTEE GMVFLEQAEKVLVQMELLENRYRETVTSERFSISSQHYDFLGEVIAKVLKKYGDQYKDFR VFETTTLKVIEDVKGFHSELGIIYLNEQNSVSIERYLEQANLAYEVISTFNTHIFLGNHH PLAKQKEIHLEELVPYPQVRFNQEGSNFSYFSEDLVEIPEQESVIHTTDRGTLMNLLVET NAYASGSGVVTGFTKKEIRLVPLAPALENRICLLFPKNREISPIGRHFIKELKALFKKEV DTKTFSTKE >gi|307679278|gb|GL456449.1| GENE 142 135286 - 136332 1087 348 aa, chain - ## HITS:1 COG:L0146 KEGG:ns NR:ns ## COG: L0146 COG1609 # Protein_GI_number: 15673482 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 1 342 1 340 345 295 44.0 1e-79 MKQPLYQQIIDYLQNEIDSGRLPVGAQVPTEKELSAQFNVSRITSKRALTELDTQGVIQR HQGKGSFVQAPKHPLHTSLNKVLFLLPFADDLSVGNFYSGLAPTIQAAGLEVFMTSPNFL REKNAADIVNEFAGLVYYAATSNDYLDLLFELALMNFPVVVLDKKIHDLPFATIQSDNFA GGKTATERLIGLGHTKIGYILSGSPALQSVRQRYLGYLQALKEANLAFHTAITETNLLDE HNFKQYFEAHQLTAVVCDNDFSALHCLRNCKNLGIHVPEELSIIGFDDIQAAAFVEPPLT TMAQDFKEIGKLAGEVLLQTMQQDIQIIEDIQVPVTLIERETISTVSK >gi|307679278|gb|GL456449.1| GENE 143 136489 - 137778 1497 429 aa, chain + ## HITS:1 COG:L133416 KEGG:ns NR:ns ## COG: L133416 COG3538 # Protein_GI_number: 15673481 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 6 429 5 431 431 649 71.0 0 MVYTEVPKSVATFMETITEKCGEAHQDWAKNFQAAFANTLLTTVKRQEDGTTFLLTGDIP AMWLRDSTAQVRPYLVIAKEDEDLAQMIAGLVKRQFRYICIDPYANAFNETDNHAGHQTD KTEMNGWIWERKYEIDSLCYPVQLAYLLYKNTGMTEQFNSDFVEGVKKILNVFTTEQDHA QSPYLFERDTWRQEDTLVEAGKGIPVGKTGMTWSGFRPSDDACQYGYLVPSNMFAVVILA YIQEIFSDVLEDATIVAIAKKLQEEIEEGIQTFGRTKNQNNETIYAYEVDGLGNASVMDD SNVPNLVAAPYLGYCSTEDEQYLTTRQTLLSKENPYFYEGKYAKGIGSSHTPENYVWPIA LAMEGMTTKDKAEKERILDLLVATDAGTHLMHEGFDVDNPENYTREWFSWANMMFCELVM DYFDIRVEK >gi|307679278|gb|GL456449.1| GENE 144 137790 - 140480 2897 896 aa, chain + ## HITS:1 COG:L130682 KEGG:ns NR:ns ## COG: L130682 COG0383 # Protein_GI_number: 15673480 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-mannosidase # Organism: Lactococcus lactis # 1 891 1 891 899 1083 60.0 0 MTKKKVYIVSHSHWDREWYLPYEEHHMRLIELVDNVLDLIENDPEFNSFHLDGQTIILDD YLQVRPEKKEAVKKAVQAGKLKIGPFYILQDDFLISSESNVRNMLIGHLESQKWGAPVQL GYFPDTFGNMGQTPQMMQLANLPAAAFGRGVKPIGFDNQVLESDYSSQYSEMWWEGPDQT KIFGLLFANWYSNGNEIPSEKEAAIAFWKQKLADVERYASTNHLLMMNGVDHQPVQRDIT KAIALANELFPEYEFIHSNFDDYLKAVQEELPEDLGTVTGELTSQETDGWYTLANTSSAR VYLKQWNTKVQRQLENIAEPLAAMAYEVTGDYPHDQFDYAWKTLLQNHPHDSICGCSVDE VHRGMMTRFENANDVGHFLADEATRQLTEAIDTSVFPEKAHPFVLFNTSGYQKTEVVTVE VEIERLPFYTGKPEDLYHELKQKATPDYQVIDPTGKAVASRIVKEDVRFGYDLPKDAFRQ PYMAKYLTVELSVKEMAPFSWDSFALIQGKTKAFEGSLLAQPATNEMENEFIQVKIENNG SLTIADKKTGETFSKLLTFEDTGDIGNEYIFFKPTEDQGITTENVTAEITNKENSPVKAS YQIKQTVMLPVSADERLEEEQKAVREFRERQAQRSTTLRPFEITTVVTMIKESNQLFFET TINNQIKDHRLRVLFPTGMVTETHEADSIYEVVTRPNQVSDAWENPTNPQHQQAFVNVHD QNKGVTIFNEGLNEYEVLADGTIAITLIRCVGELGDWGYFATPEAQCQGEYTFKYGLSLH GKPEERFATYQQAYSAQIPFTAATTTRHEGKLAPNHVYLTTAEGPIGWTAVKRQEQTNHL VVRGFNLTAQNIPCELHKETQPATCLTNVLEEPLTPAIEVDAPLRPFEIRTWRFEK >gi|307679278|gb|GL456449.1| GENE 145 140642 - 141820 1465 392 aa, chain + ## HITS:1 COG:SP0035 KEGG:ns NR:ns ## COG: SP0035 COG0436 # Protein_GI_number: 15899981 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 385 1 386 389 513 66.0 1e-145 MDLTNRFNRQVNKIAVSLIRQFDEQVSGIEGILKLTLGEPDFNTPEHVKKAAKEAIDANF SHYTGMSGLLDVREAAAYFMKEKYHLTYQPGTEILVTVGATEAISASLLAILEQGDKVLL PAPIYPGYEPIITLAGAEPVYLDTRGNDFVLTPEMIEAAMAEHGEQVKAIILNYPSNPTG VTYNRQELQAIADVLKKYDIFVISDEIYSELTYDESHVSIAEMLRDQTILINGLSKSHAM TGWRIGFIFAPAILTAEIIKVHQYLVTAAATVSQKAAVRALIEGMHDAEIMKEEYRKRRD FVYEQMTQLGFEVARPNGAFYIFAKIPTGYEQDSMKFCIDLAQKEAVALIPGISFGPEAE GYVRISYASDMDKLTTAMERIAHYMATQRVTH >gi|307679278|gb|GL456449.1| GENE 146 141931 - 142821 1165 296 aa, chain + ## HITS:1 COG:lin2642 KEGG:ns NR:ns ## COG: lin2642 COG0226 # Protein_GI_number: 16801704 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Listeria innocua # 1 295 1 300 302 360 65.0 2e-99 MKKRVIAATMLSLGLLLTGCGAQGGTTEKSSEADSNKPVKIVAVGSTALQPLVDAAKDQF TQEHPNYTVSVQGGGSGTGLSQVADGAVTIGNSDVFAEEKDGVDASKLVDHRVAVVGMGP VVNKEVGVKNLTKQQLIDVFTGKVKNWKEVGGKDQEIVVINRANGSGTRATFEKWGLDGA KPVQSQEQDSSGTVRKIVEQTPGAISYLAFSYMDDSTVALSIDGVEPKEEHVKDNSWKIW SYEHMYTKGEPNKEVKAFLDYMVTDDVQKTIVKDLGYLAITDMQVERDVNGKVTEE >gi|307679278|gb|GL456449.1| GENE 147 142863 - 144638 1514 591 aa, chain - ## HITS:1 COG:lin2643 KEGG:ns NR:ns ## COG: lin2643 COG0642 # Protein_GI_number: 16801705 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 10 585 16 588 591 259 30.0 2e-68 MKKRLRIEYFFVAAVMLLLFVGSIAATNFFFQKEMVAQQETYLRRKNTLLTDQLPPSVFE KGQLTNQQQLLVTHALDDAEERVTLLQKNGTVFFDSSQNEPLESHKKRPEIAAVLSGATY GSALRKSKTLNKELLYVATPVLKSGEIVGIIRISEQTALFSKNIQSFRRYIIFTFGILFL LITLFIFLLLRQKNQPLVTVLPILKRMLKHPDENRSIIQQSSEWNELYETINLLSQQVSQ TYKAYTSADEQFHELLDELMIGVFIIDTQGRLRLLNPKMQEMLGLSAKNMQSNYLEVIQD ADLIHLIHQVVAEKNSLHQEITVTQGPTPLRLDLSLRYLDDQSANDYQVLGIAYDLTRVR QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPEVLNQFLHIMQKDAQRLQQLI QEILELSRGSATIPYAEQEITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKDQERIFERFYRVD KARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLPLTKKEA >gi|307679278|gb|GL456449.1| GENE 148 144635 - 145345 778 236 aa, chain - ## HITS:1 COG:BH3157 KEGG:ns NR:ns ## COG: BH3157 COG0745 # Protein_GI_number: 15615719 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus halodurans # 2 235 3 236 239 269 54.0 4e-72 MKKVLVVDDEPSILTLLTFNLEKEGYQVTTSENGKNGFELALSNQYDFIILDVMLPGMDG LEITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRRL KPTTTETLQEDTPKAPLVIGEIRVDEQNYEVFVRNQPIELTPKEFELLVYFMKRKDRVIN RETLLERIWQYDFAGQSRIVDVHISHLRDKIEPDPKRPVYLVTVRGFGYRFQEPKR >gi|307679278|gb|GL456449.1| GENE 149 145508 - 145972 536 154 aa, chain + ## HITS:1 COG:lin2433 KEGG:ns NR:ns ## COG: lin2433 COG1683 # Protein_GI_number: 16801495 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 146 1 146 147 156 56.0 1e-38 MIGISSCLGGICCRYDGKSQEQEALKQLVTNGKAIMICPEVLGELPIPRPPAEIIGGDGF DVWANTAYVYTDNGEDVTEAFKAGAQRAYQKLKAQQITTLILKEKSPSCGSQLIYDGQFS GIKKAGVGVATAYFIQQGMTVYSEETWQLADISF >gi|307679278|gb|GL456449.1| GENE 150 146011 - 146394 460 127 aa, chain + ## HITS:1 COG:SP1288 KEGG:ns NR:ns ## COG: SP1288 COG2739 # Protein_GI_number: 15901148 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 16 126 1 107 110 113 66.0 1e-25 MKSVTYKGLKMGARLMEMEKTNRMNALFEFYSTLLTEKQMNYMELYYADDFSLGEIAEEY EVSRQAVYDNIKRTEKILEEYEKKLHLYSNYVVRKEYLEQLQQYVQETYPKDSEIKKYIE QIQEIEE >gi|307679278|gb|GL456449.1| GENE 151 146399 - 147817 1990 472 aa, chain + ## HITS:1 COG:SP1287 KEGG:ns NR:ns ## COG: SP1287 COG0541 # Protein_GI_number: 15901147 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Streptococcus pneumoniae TIGR4 # 1 463 1 510 523 590 64.0 1e-168 MAFESLTNRLQQAMSKIRRKGKVSEADVKEMMREIRLALLEADVNLQVVKDFTKRVRERA VGVEVLESLSPAQQIVKIVDEELTKTLGSETVELNKSPKIPTVIMMTGLQGAGKTTFTGK LAKHLMKTENARPLLIAGDVYRPAAIDQLKVLGQQLEVPVFDMGTDANPVEIVRQGLALA KEKKNDYVLIDTAGRLHIDEALMDELKQIKELANPNEILLVVDAMTGQDAVNVADSFNEQ LGITGVVITKMDGDTRGGAALSIRAVTGAPIKFVGSGEKLTDLEIFHPDRMSSRILGMGD MLTLIEKAQQDYDEKKAEELAQKMKENSFDFNDFIEQLDQVMGMGPIEDLLKMIPGMSNM PGIENVKVDPKDVARKRAMVLSMTPAERENPDLLNPSRRRRIAAGSGNSVVEVNRMIKQF KESKKMMQQMSKGDMNIPGMDQMLGGGVKGKLGKMAMNRMMKKNKKKKKKKR >gi|307679278|gb|GL456449.1| GENE 152 147892 - 148644 823 250 aa, chain - ## HITS:1 COG:BH0408 KEGG:ns NR:ns ## COG: BH0408 COG0789 # Protein_GI_number: 15612971 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 1 239 1 234 255 154 40.0 1e-37 MEYTIKKMASLSGVSARTLRYYDEIGLLQPARINSSGYRIYGQAEVNRLQQILFYRELDL KLDEIKEILEQPDFNVEQALYEHQQKLLEKRNEIDRLLASVQQTLHHYKGEINMSDQQKF EAFKQQKVQENEEKYGKEIREKYGNETIEQANKKYLNLTEKDMQAMQNVEKDLFSKLAMY QKSPKLTSQLAQEIFQLHKDWLMYSWSSYSPEAHKGLGLMYVGDERFTSYYEQHGAGFAE ALNAIIQNYA >gi|307679278|gb|GL456449.1| GENE 153 148765 - 149319 728 184 aa, chain - ## HITS:1 COG:NMB1796 KEGG:ns NR:ns ## COG: NMB1796 COG0431 # Protein_GI_number: 15677635 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Neisseria meningitidis MC58 # 1 181 3 187 190 157 42.0 2e-38 MTKKIGIFVGSLRKDSFNKLVAKTMADLFPADFEPVFINIGDLELYNQDLDDEGTPTEAW TTFREEVKQVDGVMFVTPEYNRSVPAVLKNALDVGSRPYGESVWDKKPGLVVSVSPGAIS GFGANHHLRQSLVFLNVPTLQQPEAYIGGITNLIGEDGKIIDGTVGFLQSIVDAYVDFFN RLTA >gi|307679278|gb|GL456449.1| GENE 154 149461 - 150264 647 267 aa, chain + ## HITS:1 COG:no KEGG:EF1695 NR:ns ## KEGG: EF1695 # Name: not_defined # Def: acetyltransferase # Organism: E.faecalis # Pathway: not_defined # 27 267 1 241 241 431 96.0 1e-119 MNKKINWRRQLTPSEKQTLTELRNKEMIKQGTFYKLEQTFPEKSAYTYYGLYRKGQAIQA YIVGYCFDGETLEATIVAPNVGPFVEELVQELEKQAALWGMKEVFLVMDDKQSVGLNYFN RQGIVPAFSEQYLVFQRETYSQELAKLTLLRPQAADLHSLARLLEGTPLPEDLQRTLIYK ENNQLLATLRLDHFENEWGIYGFVVTKTQRGRGLGRQVLQSALRMILEKSASATIFLEVE TENQAALHLYQTEGFQVRNQYNYYQIL >gi|307679278|gb|GL456449.1| GENE 155 150394 - 150687 493 97 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227518885|ref|ZP_03948934.1| ribosomal protein S16 [Enterococcus faecalis TX0104] # 1 97 1 97 97 194 100 4e-48 MEVYLIMAVKIRLKRMGSKKSPFYRIVVADSRSPRDGRFIETVGTYNPLKDPAEVVLKED LVLDWLSKGAQPSDTVRNILSKEGVMKKHHEAKNVKK >gi|307679278|gb|GL456449.1| GENE 156 150699 - 150944 385 81 aa, chain + ## HITS:1 COG:L9737 KEGG:ns NR:ns ## COG: L9737 COG1837 # Protein_GI_number: 15673550 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein (contains KH domain) # Organism: Lactococcus lactis # 3 75 4 75 79 83 65.0 8e-17 MADVKELILTIVRPLVSQPEAVSLEIEESTDFLEYNLTVAKEDIGRIIGKQGRVAKAIRT IVYSVRIDGPKKVRLNILDGK >gi|307679278|gb|GL456449.1| GENE 157 151065 - 151628 671 187 aa, chain + ## HITS:1 COG:no KEGG:EF1692 NR:ns ## KEGG: EF1692 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 187 1 188 188 324 99.0 9e-88 MAKRIIIMNFDIESKSYQAFSEIKKMQAERQLKGEQMAVVTHVNDGQHQFKINDFIDFTG NNHTSKDSMIGMLVGILGGPLGILFGWFAGSMYGASKDAKEIQEAQTVFEHVIQKIDEGQ TGLLLIAEEDNRPLNQLVMFDLGGEITRLDLEEVQQEINDANEVANEAKQSWQAKKEQHK EATSKEE >gi|307679278|gb|GL456449.1| GENE 158 151843 - 152784 1008 313 aa, chain + ## HITS:1 COG:L18686 KEGG:ns NR:ns ## COG: L18686 COG1234 # Protein_GI_number: 15672612 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Lactococcus lactis # 1 299 1 300 307 342 57.0 4e-94 MEIQFLGTGAGVPAKHRNVTGIALKLLDERNAVWLFDCGEGTQLQILKSSIRPRKIEKIF ITHLHGDHIFGLPGLLSSRSFQGGTEPLEIYGPVGVADFVKTSLRVSQSRLSYPLKFIEL TKENDVIFKDKQFTVRCNILDHGITSFGYRIEEAAHEGELQVEKLQALGIPSGPLYGKLK RGETIVFDGQEINGQAFVGERKPGRIVTILGDTRKTKNSVTLARRADVLVHESTFNKHEA KMAKAYFHSTSQQAAEVAKEAQVKQLILTHISARYLTKEAYQLQEEAQEIFPNTKIVKDM DIIEIPFANEGGA >gi|307679278|gb|GL456449.1| GENE 159 152785 - 153573 966 262 aa, chain + ## HITS:1 COG:SP0675 KEGG:ns NR:ns ## COG: SP0675 COG0300 # Protein_GI_number: 15900576 # Func_class: R General function prediction only # Function: Short-chain dehydrogenases of various substrate specificities # Organism: Streptococcus pneumoniae TIGR4 # 8 262 4 251 251 234 45.0 2e-61 MDLTNKVVVVTGGSAGLGEQICYEAAKQGAVVVVCARRINLIGKVREQCAALSGREAFSY QLDIADPESVERVVEAISAEVGPIDVLVNNAGFGLFENFVEIDLAVARQMFDVNVLGMMT FTQKVAIKMIEAGQGHIINVASMAGKMATAKSTVYSATKFAVLGFSNALRLELKPLGVAV TTVNPGPIQTEFFDKADPTGTYLAAVDKIVLDPTKLAKEVVGSMGTSRREINRPFVMEAA ARFYTLFPHLGDFIAGNILNKK >gi|307679278|gb|GL456449.1| GENE 160 153590 - 154057 665 155 aa, chain + ## HITS:1 COG:BS_yrvD KEGG:ns NR:ns ## COG: BS_yrvD COG5416 # Protein_GI_number: 16079817 # Func_class: S Function unknown # Function: Uncharacterized integral membrane protein # Organism: Bacillus subtilis # 1 77 1 77 107 62 40.0 4e-10 MKNQWRVILGLVLVLIVVIFAVLNNQAVPVNFGFTKISGPLILIILGSAIIGALVGLLTS TTTIWNQRKELKAVQKELVIYKNDMDKLVKEETEKVQRSFDNQLADLQVKQAAAPQVAEP VVNEQTSNTEVDATPVSGSRIDRYVKPRVNEEEQK >gi|307679278|gb|GL456449.1| GENE 161 154212 - 156524 2230 770 aa, chain + ## HITS:1 COG:SPy0926_1 KEGG:ns NR:ns ## COG: SPy0926_1 COG0608 # Protein_GI_number: 15674946 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-specific exonuclease # Organism: Streptococcus pyogenes M1 GAS # 1 571 1 570 580 540 50.0 1e-153 MKKSNYQWQLQTKTELPVEFIEQLKKEEINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY DPFLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNR FVHGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAISYAMAQGVDVIVTDHHELPEQLPE AFAIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELPIELLDLVAIGTIADLVSLTDENR TFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRLGEAAPGVEL MTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLIDPNAPVHILAKQGWHEGVLGIV AGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVREQFTHFGGHHMAAGMT LPVENIPFVQEHLSHFIEKNQIDMANGQELLISESLAVSQATTTFIDQLRILAPFGTDNT VPTFVFKEITPTQIRKIGADNAHLKFQMNQEGAQLDAIAFQMGPQADELAQGTADVAGQL SINEWNGRKKPQLMVTDFAVSGRQLFDFRGKNNQTKPIPSEATAYLLFDEKNQKFISDPT ANIIVWSNQEELVEAVSQNQIEQLVFVDCPVEAITVKEIVEATEIQRIYMMFISPEEAYL NGMASREQFATLYKFILQQKEVNLRSQLSKVANYLNIQEKLLIFMIQVFFDLGFVTIESG VLNSIEKPDNRPLTESQVYQQRLKKIKTEEFLLYSDCQTIQQWLWNEEDK >gi|307679278|gb|GL456449.1| GENE 162 156527 - 157039 784 170 aa, chain + ## HITS:1 COG:L22735 KEGG:ns NR:ns ## COG: L22735 COG0503 # Protein_GI_number: 15672615 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Lactococcus lactis # 1 170 16 185 185 253 72.0 1e-67 MDLRDYIASIPDYPEKGIVFRDISPLMANGDAYREATKQIVDYAKEKRIDMVVGPEARGF IVGCPVAYELGVGFAPVRKKGKLPRETIEVTYDLEYGSDTLTLHKDAITPGQRVLICDDL LATGGTIKATIELVEQLGGIVVGCAFLIELMDLHGRDKIDGYDIVTLMEY >gi|307679278|gb|GL456449.1| GENE 163 157145 - 157342 243 65 aa, chain - ## HITS:1 COG:no KEGG:EF1686 NR:ns ## KEGG: EF1686 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 65 1 65 65 103 100.0 3e-21 MEAIRRVGFLFFVLVIGIFLGTLGLRLAFMIVTPLFILWFMSWDEKRYTRTRKQQQARYV YRKFP >gi|307679278|gb|GL456449.1| GENE 164 157536 - 158189 723 217 aa, chain - ## HITS:1 COG:L97827 KEGG:ns NR:ns ## COG: L97827 COG1272 # Protein_GI_number: 15672479 # Func_class: R General function prediction only # Function: Predicted membrane protein, hemolysin III homolog # Organism: Lactococcus lactis # 1 216 1 215 217 194 54.0 9e-50 MEKTHFSKKYLIVNEVLNAVTHGIGAGLSIAGLVILLVKGARLGSPIHVVSYAIYGSMLI LLFLSSTLFHSLIFTRAKKVFQVFDHSSIFLLIAGSYTPFCLISIGGWLGWTLFSLVWLI AIVGIVYKSLTLHKQETVKNISTIIYIVLGWLCIIAARPLYESLGFTGTALLVAGGVSYT LGAAFYSLKNVRFMHVVWHLFVMLAAILMYFSVLFYT >gi|307679278|gb|GL456449.1| GENE 165 158321 - 159163 1061 280 aa, chain + ## HITS:1 COG:SP1112 KEGG:ns NR:ns ## COG: SP1112 COG1307 # Protein_GI_number: 15900979 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 276 1 274 279 284 53.0 2e-76 MTNVKIVTDSSCTMEKSLRDELNIHMMPLSIMVDGVVYPDDDHLPGEKFMDMMANAKALP KTSQPPIGEFVELYDRLGEDGSEVISIHMTKGLSGTVEAARQASNLSSSKVTVIDSDFTD QGLSFQVIQAAKLAQVGAGVPEILAEIERVKQNTKLYIGISTLDNLVKGGRISRTTGLLS NIFNMKVVMDFENTELIPVAKGRGVKTFNKWFDELKSELSKIPNVRQIGISHADGLELAN GFKEGLQAIFKDMDIPVLHTNPVIATHTGKNAFAIMYYTD >gi|307679278|gb|GL456449.1| GENE 166 159267 - 160166 979 299 aa, chain + ## HITS:1 COG:SPy1492 KEGG:ns NR:ns ## COG: SPy1492 COG2755 # Protein_GI_number: 15675396 # Func_class: E Amino acid transport and metabolism # Function: Lysophospholipase L1 and related esterases # Organism: Streptococcus pyogenes M1 GAS # 23 280 27 273 286 258 49.0 9e-69 MKKQTQHILLTVLTPILIALGVFTLLSVAIPKAKPLLKQEKVATTFQKNQKEVIHYTAIG DSLTEGIGDLTNSGGFVPIVADDLKEHYNLNGVQTDNFGKNGDRSDQILKRIKEKPEIQK GLASADVITLTVGGNDLMKVISSNIFDLKVSSFNRPQKAYQRRVRRLLEEIREYNEKAPI YVLGIYSPFYLNFSEITEMQEIVDNWNQATEEMVQEQKRAYFIPINDLLYKGRGDEVGVT GGDSETTGSSASKEDLNNLLYEEDRFHPNNLGYQIMAGAVRDEMVKTEKEWITKSEGSE >gi|307679278|gb|GL456449.1| GENE 167 160168 - 160812 646 214 aa, chain + ## HITS:1 COG:SPy1491 KEGG:ns NR:ns ## COG: SPy1491 COG4698 # Protein_GI_number: 15675395 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 23 209 8 193 195 125 37.0 8e-29 MNEEKPKTSKSIKKTQPTNLKRNPWKIAFLVLVGLVIGSVAFVTFRATQVREPDLKKIPA IVEKEGEPVVTIQSKKQQVNKLIDFYLADFQKGSEIKYKFYLENDALLNGTFQVLGHDIP FYLYFDPYVMANGNVQLKAKSLSIGTLGLPIKEVLKFAKRSYKLPKWVEINPDDQTVLLR LDQFRMQNGLFVRAEKINLVDDDIRMNIYLPKEK >gi|307679278|gb|GL456449.1| GENE 168 160829 - 161344 660 171 aa, chain + ## HITS:1 COG:SPy0466 KEGG:ns NR:ns ## COG: SPy0466 COG0225 # Protein_GI_number: 15674584 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptide methionine sulfoxide reductase # Organism: Streptococcus pyogenes M1 GAS # 3 170 2 169 169 243 70.0 9e-65 MEEKAIFAGGCFWCMVQPFDTQPGIISVVSGYTGGHVPNPTYEQVLTHTTGHTEAVEITF DPAIISYEQLVDIYWQQTDPTDAFGQFQDRGDNYRPVIFYRSQEQKEIAEKSKERLANSG RFTKPIVTTIEPAAPFYPAEEYHQDFYKKDALRYGLSHQRRSEFIEEKWSD >gi|307679278|gb|GL456449.1| GENE 169 161350 - 161568 300 72 aa, chain + ## HITS:1 COG:lin1971 KEGG:ns NR:ns ## COG: lin1971 COG4479 # Protein_GI_number: 16801037 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 68 1 69 77 72 60.0 1e-13 MRRSFYHYLMTLKGPAKDSETDFANEAAKDIQFPKQTEDYHELSSYLEMNADYLSNMDIF DELWEKYLENNK >gi|307679278|gb|GL456449.1| GENE 170 161665 - 163098 1750 477 aa, chain + ## HITS:1 COG:lin1965 KEGG:ns NR:ns ## COG: lin1965 COG0793 # Protein_GI_number: 16801031 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protease # Organism: Listeria innocua # 9 470 31 491 496 302 38.0 1e-81 MKNKRTVPFYQYIISLLCVAFLAGGSSYIYFDHRVKKMSQEGAITNADLSKVQDLYNEIS TNYVGEVDKNELVEGALKGMSEAIGDPYSTYLNESAANDLNESLSGDFEGIGATMTMKDG EPVVAEAPVADSPAEKAGIKEGDIIEKVDGTATKGMKLAEVVSKVRGKKGTSVELTIQRE GETKNISIKRGKIPVKTVTGELDKNDAQIGSIKITSFGKKTYQELKETITNLRDKGAKSF VIDVRQNPGGLLDQAERMASMFLKNGETIVQFEDKKGRTMKEVASKELDGGFKVEEPVAV IIDGNSASASEIFAAALHESANVPLIGTKTFGKGTVQTVKDLNDQTEIKLTVLKWLTPKG EWINEKGIEPTIKADYPEYAYLKLIPRDKTLKEGDQSEDIQNLNAILAVLAYPIDENNAN YTAETKAAVSDLQQKNGLPVTGEIDNETATKIEATLGKLILENDAAYDTAVKEIQKN >gi|307679278|gb|GL456449.1| GENE 171 163117 - 163671 536 184 aa, chain + ## HITS:1 COG:lin1310 KEGG:ns NR:ns ## COG: lin1310 COG0681 # Protein_GI_number: 16800378 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Listeria innocua # 27 182 25 179 180 135 44.0 5e-32 MKKKRDYVGYLMYFLKILVPAIVAVFILRGFFLIPVRVDGHSMQKNLNQGDMIVMEKFSA IKRFDVVVFKTDTGSILIKRVIGLPGEAVRYENDQLYVNNQPIAEPYLTKNRKKDHETMP YTTNFDSKELLMQEKLPKDSYFVLGDNRRMSKDSRSFGAIHADQILGKAQFVYYPLTHMK IIPK >gi|307679278|gb|GL456449.1| GENE 172 163792 - 164235 487 147 aa, chain + ## HITS:1 COG:no KEGG:EF1677 NR:ns ## KEGG: EF1677 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 147 1 147 147 170 98.0 2e-41 MIRKTILASSILGVGLLIGACGNQTQTQMNSTNTSESSQPKVTESSRKSSESASNNEGVS SDSNKPTSSTTESEILKGLAEEKTLKEKIPSLNQTTIKKVTDNEYKRILVMEEKATGTTY KSILIKKQNRLKIVNETTDELLYNGTL >gi|307679278|gb|GL456449.1| GENE 173 164384 - 164752 546 122 aa, chain + ## HITS:1 COG:BH3492 KEGG:ns NR:ns ## COG: BH3492 COG1725 # Protein_GI_number: 15616054 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 1 119 1 119 129 110 45.0 9e-25 MEFNFSGEKPLFQQVADQIAEGIFNGAYLEGEQIPSTTEISKSYQINPATVLKGMNLLVE RQLIEKKRGIGMFVLPDAQERVRSARKEEFLNKEVLEVVAEAKKLGITAEQLKQLIERGY DA >gi|307679278|gb|GL456449.1| GENE 174 164749 - 165603 824 284 aa, chain + ## HITS:1 COG:BH3493 KEGG:ns NR:ns ## COG: BH3493 COG1131 # Protein_GI_number: 15616055 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Bacillus halodurans # 2 278 4 282 283 171 35.0 1e-42 MSLRVESVSKKYHQKKALDNISITFEKETIYGLLGRNGAGKSTLLNIINNRSFATSGSVQ LAGETVTDNETALNHIYLMSEDNLFPPQLKIKDIFKTTEGFYGSFDWSLAEQMLSDFGLD SKKTFKKLSTGYRSIAKLIVALSVPCEYIFLDEPVLGLDANHRELFYTYLIETYQERPRT FVISTHLIEEIANLLEDIIIIDQGKLIRAESIETILKNGRIVSGPKEQVERYTQSLEILG MDTLGGAVTAYVYGDLPTEKAEVQIAPLNLQTYFVQLTNRKKEK >gi|307679278|gb|GL456449.1| GENE 175 165605 - 166336 529 243 aa, chain + ## HITS:1 COG:no KEGG:EF1674 NR:ns ## KEGG: EF1674 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 243 1 243 243 350 98.0 4e-95 MKFKTALQYRVIYQVRSLAIYFGFYALFGILFPLIGLLFSNDVNTVSSDAVIPCLVFMGI LSFLGVNTDFKLFIQNGLSRWTIFLVNFVSNAILSLVGSLAVLVLIKVFSGNFISHFQLS MKLIDVYAQGNFFMSWLLFFILLMLSGSLGLLAGVFNDRIDGVKKLIVLLLLLMIPILLG TIAQLGGAPMRLRMLHVLQAMVGYQSTGFTVLPLLLTISCFVGINLGLAYLLNKHREIKR VNA >gi|307679278|gb|GL456449.1| GENE 176 166529 - 167209 288 226 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 3 202 4 199 223 115 35 2e-24 MAVIEAKNIKKSYGKNETKFDALKGVDLKVEKGESVAIIGKSGSGKSTFMHILALLDQPT SGDIYLNGKNVTSIRKKVLNKTRNEEFGFVFQQFFMNAKDTVLNNVLLPLKIGGISGSKR KKMALDALKAVGLEDKVQNKANNLSGGQKQRVCIARALVNNPQIIFADEPTGNLDSATGK KIEELLFDLNKNKGITLIIVTHDPDLAARCDRQVHVRDGLIVGGDE >gi|307679278|gb|GL456449.1| GENE 177 167210 - 168493 1375 427 aa, chain + ## HITS:1 COG:CAC3584 KEGG:ns NR:ns ## COG: CAC3584 COG0577 # Protein_GI_number: 15896818 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Clostridium acetobutylicum # 1 424 1 438 440 120 25.0 5e-27 MKFRDILKSASTNLMRNKGRTVLTIIAIFIGAFTIALTTGVNIGVNDYIDKQVGSVGGAN QLFIQPKMEMNVGNGTEPSKYNPEKKTSTIQQQSMLAEKDIEKIKKISDVTSVEPMKSVA IDYIKGADKNKYVFSATSALDEMTIDLAAGRKVSQTSQDFEINLSPEYVKALGYTSSKAA VGETVQLGISSSLKGQEQVIEAKIVGVRNASVIQNGLSLMNKALIDKVVSINQADLPEHL KNQYAMIIAEVKKDSTPEQIKDIKKDLDKAGYLATTVEDEIGMIRNIINAITGVLTMFGA IALLAASFGIINTLYMSVQERTREIGLMKAMGLSNGKVFTIFSVEAALIGFFGSILGILG AVGVGNLVNRLATDSFLKALTGFKLIQFSLPSSLTIILVIMFIAFLAGTLPARRAAKLDP IESLRYE >gi|307679278|gb|GL456449.1| GENE 178 168611 - 169552 1161 313 aa, chain + ## HITS:1 COG:lin0622 KEGG:ns NR:ns ## COG: lin0622 COG0604 # Protein_GI_number: 16799697 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Listeria innocua # 1 309 1 309 313 451 73.0 1e-127 MKAVVINQYGSKEVLEEAEVTLPELSEHQVLVKEYATSINPIDWKLREGYLKQMFDWSFP IILGWDVAGVITEVGSQVTDWQVGDKVFARPETTRFGTYAEVTIVDDHLLAKIPETISFE EAAAVPLAGLTAWQALFDHGHLKEGETVLIHAGAGGVGTYAIQLAKEAGAHVITTASAKN HALLKKIGADEVIDYHTTNFAEVLTDVDLVFDTMGGEVQKNSFDVLKPNTGRLVSIVGIE DKQLAAEKNVSAESIWLQPNGEQLQKIADLMAAGKVKSIIGEVFPFSRQGIYDAHALSET HHAVGKIVVQMAE >gi|307679278|gb|GL456449.1| GENE 179 169578 - 169670 67 30 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVGTSVLLTKKWVLSRNDLGPGGGAPLFLF >gi|307679278|gb|GL456449.1| GENE 180 169646 - 170248 617 200 aa, chain - ## HITS:1 COG:SA2306 KEGG:ns NR:ns ## COG: SA2306 COG0400 # Protein_GI_number: 15928097 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Staphylococcus aureus N315 # 1 184 1 184 197 217 55.0 1e-56 MHSIFKKGHPEAPVFVLLHGTGGDETSLLPIAQELNKQATVLSIRGDVSENGMNRYFKRL AEGHYDLEDLEKRGEALHKFIQQAANEHQFSLDKIIFIGYSNGANIAIQLLLTHPDSYHQ AVLYHPMFPVELTNQPDLTDTSVLLSLGEHDPIVPLPESMRVIQLFQNHGATVQEVWTQS HQLTYQEIKETQTWLAHLSS >gi|307679278|gb|GL456449.1| GENE 181 170261 - 171223 1166 320 aa, chain - ## HITS:1 COG:SA2307 KEGG:ns NR:ns ## COG: SA2307 COG0346 # Protein_GI_number: 15928098 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Staphylococcus aureus N315 # 1 319 1 319 319 442 66.0 1e-124 MKKEDQLLGIHHVTAMTSDAEKNYHFFTDVLGMRLVKKTVNQDDIYTYHTYFADDLGTPG TTMTFFDFPNNPKGLKGTNTISRTGFRVPSDAALTYYENRFNEFAVKHTGISEEFGKKVL RFWDFDDQAYQLISDELNQGVAAGTPWKKGPVPTEFAIYGLGPVEIAISYFHEFKEVFEE ILGFHVVAQEGNRYLLEVGQGGNGAQVILVDGDTSSQAQQGYGEVHHVAFRLADRKSLGT WQALFDHLGLQNSGYVDRYYFESLYVRIGHILVELATDEPGFMGDEPYETLGEKLSLAPF LENRREYIESVIKPFNTKRA >gi|307679278|gb|GL456449.1| GENE 182 171234 - 171662 554 142 aa, chain - ## HITS:1 COG:SA2308 KEGG:ns NR:ns ## COG: SA2308 COG1846 # Protein_GI_number: 15928099 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 141 1 141 144 123 44.0 1e-28 MSQQQEALKAYIGLLRTSHQLEQLAKQDVTCYDLNITEFSVLELLLHKGPQTIQKIKEKI LIASSSTTYVIDQLHKKGYVTRTPSEKDRRITYVELTEAGKTLIEEIFPMHAKRIAEAFE QLSSEELTLLQKTLRKITNETK >gi|307679278|gb|GL456449.1| GENE 183 171791 - 172585 955 264 aa, chain - ## HITS:1 COG:BS_yvaG KEGG:ns NR:ns ## COG: BS_yvaG COG1028 # Protein_GI_number: 16080412 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Bacillus subtilis # 1 264 1 264 264 274 54.0 1e-73 MDLHLTNKLALITGSTKGIGKAIAIEMAREGTDVIINGRNEAEVTKVVKEIQTMFPDTHP QAGTADISIESQRATLLEKFPKVDILVNNMGIFEPMEYWDIDDATWEKFFTVNVLSGNAL AKAYLPKMLAQDFGRIIFIASEEAVMPSGEMPQYSMTKTMNLSLAKSLSNLTVGTHVTVN TVMPGSTLTEGVEKMLEDMYADSDIPKEDWEKDFMKNHRSRSQIQRLIRPEEIGRFVTFV ASPDSSSFSGEALRIDGGLVPTIF >gi|307679278|gb|GL456449.1| GENE 184 172836 - 173534 578 232 aa, chain + ## HITS:1 COG:no KEGG:EF1666 NR:ns ## KEGG: EF1666 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 232 1 232 232 373 99.0 1e-102 MKKQYYWNIPDNLLNSLKQRKKLYSFYKNEQNKARELVENCQSVLFPELVASLNKIDERI KLLIFYQNLEDCELSEEEIITVIEREYFVTFYETIEEPTTEIISSHSMYYLLQQPTKEML WDLDFSNMLKQGQLVDLMDYQKLTKCYQKLQNQAKNLIEKLNKETFYTFYSQLLLIDCQC KLLIEEALLKEESLMTVDECLTAIKQEIRKIHFEQFKYQHYLFEDLSLRYQV >gi|307679278|gb|GL456449.1| GENE 185 173639 - 174361 631 240 aa, chain + ## HITS:1 COG:no KEGG:EF1665 NR:ns ## KEGG: EF1665 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 240 1 240 240 410 99.0 1e-113 MNANRLKLLMMGLMVLDHISYFVPPEWALIFHVITRCVGVFFGYMAVEGFNYTRNVYRYN GRLYIWAAIMFVGNTLLNHLVNNPAVTVHNNIFFTLALGVSMLIVTKAMLEMPKISLKIV LLISILAILGIGAMFAEGGIVMLPFMLITYLARKRLVLRNCLYGALALFFLVTSFQWLGD WPTTIEMLAYNSDFMFITVLPFISLYNGERGSKAPFFKYLFYGFYPLHLWLIALIANYVH >gi|307679278|gb|GL456449.1| GENE 186 174440 - 175474 826 344 aa, chain - ## HITS:1 COG:L171552 KEGG:ns NR:ns ## COG: L171552 COG1434 # Protein_GI_number: 15672559 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 19 311 19 308 310 342 66.0 8e-94 MALLLFFLFIALLGFGILKINNRSILGGITLASGTLLSLVTLLFIGLDKIYLHFKNGDLI TLAIAYLLIPAVFIGICLYFIFNSRTMQTKEGKSVTAKLSAGLGLNLLIALPAFLYLLSV GTAQIPYVLFLFLLFLLLMDLLLTFLFAAYVLYSWMYQMIPLKKAVDYIIVLGSGIRSEE VPPLLKSRLDKGIEYYEKNPTAKFVVSGGQGPDEPVAEAFAMKKYLLSQNIPAEAILMED QSTTTYENMLFSKAIIQADWQKMPSDSKQPSVIFSTNNYHVLRGAMYAHRVGLKAEGVGA PTALYFLPTALIREYIALLVHDKRIVLFVFLLVTLLLGISILPI >gi|307679278|gb|GL456449.1| GENE 187 175590 - 175712 78 40 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKSKLDNNCLEKEKLDLLSFSFSIKNINKGIKINNLYALT >gi|307679278|gb|GL456449.1| GENE 188 175757 - 176578 769 273 aa, chain + ## HITS:1 COG:lin1406 KEGG:ns NR:ns ## COG: lin1406 COG0280 # Protein_GI_number: 16800474 # Func_class: C Energy production and conversion # Function: Phosphotransacetylase # Organism: Listeria innocua # 2 273 16 286 288 191 41.0 1e-48 MITVSIAGGSQPEILQLVKKALKEAEQPLQFIVFDTNENLDTENLWKYVHCSDEAAVAQE AVSLVATGQAQILLKGIIQTHTLLKEMLKSEHQLKNKPILSHVAMVELPAGKTFLLTDCA MNIAPTQATLIEIVENAKEVAQKLGLHHPKIALLSAAENFNPKMPSSVLAKEVTAHFNNQ QEATVFGPLSLDLATSEEAVAHKRYSGPIMGDADILVVPTIDVGNCLYKSLTLFGHAKVG GTIVGTKVPVVLTSRSDSTESKFHSLRFAMRQV >gi|307679278|gb|GL456449.1| GENE 189 176597 - 177679 1231 360 aa, chain + ## HITS:1 COG:lin1407 KEGG:ns NR:ns ## COG: lin1407 COG3426 # Protein_GI_number: 16800475 # Func_class: C Energy production and conversion # Function: Butyrate kinase # Organism: Listeria innocua # 4 352 5 355 355 352 49.0 5e-97 METVLVINPGSTSTKLALFANHDCLAEETLRHSVQELAPFENVVSQTPFRKQMIAEFLET HNITQLAAVVGRGGLLKPIPGGTYLVDQQMLEDLRTERFNTHASNLGAILANEFAEKYHV PAFIVDPVVVDELQPLARISGLKGIQRRSVGHALNQKAVARKIAEDLGKTYEQSNFIVVH LGGGISLGAHQKGRMVDVVNGLDGEGPYTPERSGALPLVEFAQWILEQELTISQVKKLIA GNSGLKSYLGETDLRHIQAQIAAGDQTANYYLKGMCYQIAKSIGEMAVVLEGTIDAIILT GGAAYSQTVVQEISQKITWIAPIKVYPGEMEMAALYEGVNRVLTGEEQALNYSEAKIEQE >gi|307679278|gb|GL456449.1| GENE 190 177685 - 179094 818 469 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 6 468 5 457 458 319 38 7e-86 MAEQTDLLILGGGTGGYVAAIRAAQKGLNVTIVEKYKLGGTCLHKGCIPTKALLRSAEVF DTLKQAASFGIETEAASIDFSKIQQRKEGIIEQLHKGVEGLCKKNKIKILAGEGAILGPS IFSPVSGAVAVTFNDPTREEEIIVPKNVIIATGSSPKTLPNLPLDEEFILSSDGMLELEE LPESIAIIGGGVIGVEWASLLNSLGVNVTIIEFLDRLLINESATISKELKKRLEQRGINI LLGSKVQEAKVTGQKVQVEVAGQESLTVDKVMVAIGRQPNINKLGLQNTSVKYTDKGIEV NEFYQTTEGHIYAIGDCIDTLQLAHVAMKEGELAVQHLLDETVEPLNYTNVPRGVYTNPE IASVGYTRETLPADKEVVIGTFNFNGNGKSLVYGETDGFIEVIRDKKTDDLLGVSMIGPH VTDLIAEASTAMYLDAAPIEIGEAIHAHPTMTEVLQEAALDTYGLAIHK >gi|307679278|gb|GL456449.1| GENE 191 179111 - 180097 1204 328 aa, chain + ## HITS:1 COG:lin1409 KEGG:ns NR:ns ## COG: lin1409 COG1071 # Protein_GI_number: 16800477 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit # Organism: Listeria innocua # 3 326 2 325 331 323 53.0 3e-88 MKTLKKSGLSKEELIQAYRQVLRGRRLDERLWQLTRIGKTSFNISGQGAEVAQVAMAMAF NPQKDYFLPYYRDMTACLVWGMTSKDILMGSFGKEADPSSHGRQMPNHYGSKEHNIVSFS STVSTQMPLATGVGYAAQLQKADFVALTTTGEGSANQGEVQEAMNFAGVKKLPVIFVVEN NEYAISVPIEEQYANKRMADRAKAYGFEGVTVDGSDFAEVYLAFKEAVKAARGKKGPKLI ELMVSRLTSHSADDDQSVYRSKEEIEEMKKNDAVKLFEKQLLEEGYLTDEDIAKIDEEIR AEINQATDEAEAMPDPVPTSILEEVYAK >gi|307679278|gb|GL456449.1| GENE 192 180119 - 181105 1417 328 aa, chain + ## HITS:1 COG:lin1410 KEGG:ns NR:ns ## COG: lin1410 COG0022 # Protein_GI_number: 16800478 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit # Organism: Listeria innocua # 1 328 1 327 327 424 61.0 1e-119 MAEMTYLEAINLGISEEMARDEKVVIFGEDVGGDKGGVFGVTKGLAAKYGDERCFNTPLT EGLIGGLAVGLGLMGYRAIGEFQFADYILPATNQLLSEARTMRYRTKGDWTAPIVYRTPY GGGVRGGLYHSQSTEKVFCGQPGLRVVTPSNPYDAKGMIKAAIRSDDPVIFYEHKRLYRL LKDEVPADDYIVPIDKANVVRTGSDLTVISYGMTLQLALAAAEKLAAEGIDAEIVDVRSL YPLDRETLVAAAKKTGKVLLVTEDNKEGSVMSEIAAMISEDALFDLDAPIQRLAGPDCPS MPYALPLEREFLINEEQVLAAMKELAEF >gi|307679278|gb|GL456449.1| GENE 193 181129 - 182427 1533 432 aa, chain + ## HITS:1 COG:BS_bfmBB KEGG:ns NR:ns ## COG: BS_bfmBB COG0508 # Protein_GI_number: 16079459 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Bacillus subtilis # 1 432 1 424 424 372 48.0 1e-103 MATKEIKMPHLGESVTEAAIVQWLVKPGDSVKRYDPLMEVVSDKVTTEVPSDFDGVVKEF LISLDTDVPIGTAVMTLETEETTEKTEVATLAPVKEASAEQAQEHETVATTSTATSHQKN NGRYSPAVLKIAQEKKIDLTQVTGTGRDGRITRKDVTNFTPTQARTPEKTVSPGTSPSIS EEPVASQNESAATASPTETSPDKIVSADPVRKAIAKKMVQSVNEIPHAWLMVEADVTNLV QLRNSLKDEFKQQEGLSLSFFPFFAKAVIQALKKNPKINTSWDDGSIIYHKDVNLSIAVT TDEHLYVPVIQQADNYSIAGLAKEINRLAQEVRQGTLASKEMQGGTFTLNNTGTLGSVQS MGIINHPQAAILQVESINKRLVPTADGGFKVADMVNLCLSIDHRILDGQQAGKFLRDVKD NLAKYNADTDVY >gi|307679278|gb|GL456449.1| GENE 194 182571 - 183623 1136 350 aa, chain + ## HITS:1 COG:SPy0851 KEGG:ns NR:ns ## COG: SPy0851 COG3641 # Protein_GI_number: 15674884 # Func_class: R General function prediction only # Function: Predicted membrane protein, putative toxin regulator # Organism: Streptococcus pyogenes M1 GAS # 15 350 12 352 352 249 49.0 5e-66 MPTDKLDAQLTPRIFFNKVLAGTASGTIIALIPNAVLGAILKYFAEYKIIEMIIHAAQIF QLATPLIIGGLIAFQFGLTPQKMMIAGGAAFAGSGVIKFNSEVKGFIGAGTGDIINIMIT ASVAVLLLLVIDKKFGSVEIIALPIVVGVGAGLFGMLIYPYVTQITVAIGKVINNFTDFQ PIIMSILIACSFAALIISPITTVAIGLAIQLNGLSAGAAAMGIAATTVVLVINSWNVNQS GVTLAVSLGGMKMMMPNLFKYPIILIPCLFTATISAIPVVLFNISGTPQSAGFGLVGLVG PLASLDAGLGILPLLFSWFVVPIVAGLFSKFLFEKVLKLYDSKVVFAYQG >gi|307679278|gb|GL456449.1| GENE 195 183632 - 184522 732 296 aa, chain - ## HITS:1 COG:SA2330 KEGG:ns NR:ns ## COG: SA2330 COG0583 # Protein_GI_number: 15928121 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Staphylococcus aureus N315 # 1 295 4 292 295 116 25.0 6e-26 MNIQLLKYFIEIVNTRSLSAAARNLFVTQPTLSLALKKMESELGTALFDHSDQPFQLTDT GVYLYEHGQEVVFQFDQLVTDIREMNQKPVKKQLRLGLTTLFAVQFMKEISRFLTTHPHV NLILQQDGSPKLQTMLANKEIDMGLISFPNTLPEIIHIEPLETTTKGYHVYVVVPESNPL SQYEKLTFKDLKDQRFSSLSDNFMIGRLLLDRTRSFGYEPNIILHNDDLQVLLYSLQKNN SICLLPIEYYEVGKSQGLKWIPLKDKFDYFPIGIALRRDFSMTEDVRDFIQIIKEN >gi|307679278|gb|GL456449.1| GENE 196 184699 - 185640 921 313 aa, chain + ## HITS:1 COG:L157055 KEGG:ns NR:ns ## COG: L157055 COG1893 # Protein_GI_number: 15673305 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate reductase # Organism: Lactococcus lactis # 1 313 1 312 312 409 62.0 1e-114 MKIIIAGAGAMGSRFGLMLHQAGNDVIFVDGWPEHIEAIRKNGLVADFNGEVVTAKIPIY PQTEVASIDFTADLVILFTKAMQLEGMLEALEHFLNKNTKVLCLLNGIGHEDIIKKYVPY ENILLGNTMWTAGLEGPGKVKLFGNGSIDLQNLGAQSEQAAEAVIKVLNNAGLNARYSEN ILSSIYKKACVNGTMNGLCTLLDCNMADFGETEQADQIVQQIVNEFLAVAEVEQVTLDKQ AVLQQIRSCYNRETIGLHHPSMYQDLITNHRLTEIDYINGAIVRKGKVYGIATPYCQFLT ELIHCKENLLHAK >gi|307679278|gb|GL456449.1| GENE 197 185917 - 186768 962 283 aa, chain + ## HITS:1 COG:L128951 KEGG:ns NR:ns ## COG: L128951 COG1161 # Protein_GI_number: 15673276 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Lactococcus lactis # 1 275 1 275 282 323 54.0 2e-88 MTIQWFPGHMAKARREVSEKIKYVDIVFELVDARLPLSSRNPMMDQIVQQKPRLVLLNKG DLADNDQNKKWQHYFQKKGYQTLVINAQQNKGINKIVPAAKEALKEKLAREQAKGLKPRA IRAMCIGIPNVGKSTLMNRLVGKKIAQTGNKPGVTKGQQWLRSGSQLELLDTPGILWPKF EDEEIGKKLALTGAIKDQLLHLDDLAIYGLEFFARFYPQRLTERYGLTEEELFLPAPEQL MLISQKRGFRDDYNRASEMIILEIRSGKLGTYTLDRWEELGDE >gi|307679278|gb|GL456449.1| GENE 198 186770 - 187537 1163 255 aa, chain + ## HITS:1 COG:SPy1162 KEGG:ns NR:ns ## COG: SPy1162 COG0164 # Protein_GI_number: 15675138 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HII # Organism: Streptococcus pyogenes M1 GAS # 5 254 4 256 263 268 56.0 5e-72 MAKESIQAIKEALLTVTDATDERLASWREDERSGVQQAIKQWERRQLAKEKEWQLFKEMS QFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLY NQIQEQAVAIGLGIADQGVIDQINIYQATKQAMKMAIDDLAFAPDYLLIDAMQLDVPQPQ ESLIKGDARSISIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKYGV TPIHRRTFAPIKDMI >gi|307679278|gb|GL456449.1| GENE 199 187598 - 188461 738 287 aa, chain + ## HITS:1 COG:SP1266 KEGG:ns NR:ns ## COG: SP1266 COG0758 # Protein_GI_number: 15901126 # Func_class: L Replication, recombination and repair; U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake # Organism: Streptococcus pneumoniae TIGR4 # 81 287 79 284 286 219 52.0 5e-57 MEILQRQLLFKLAVCQGIGNLGILKVLQEAIAQKRVDFSSTEIIRIAEIKKYRELFEQSW LHHTIHSEALYIRQCQHQFMTILDAVYPKLLREIYNPPAILFYRGNLQLLSRRKIGIVGA RYATSYGLRVTEALVPKIVKEGFTIVSGLAKGIDSRSHEMAIQNGGQTIGILGTGLDVYY PYEKKELQQTMKQNQLVLTEYVNGSGPKKYHFPARNRIIAGLSLGVCVMEARKNSGSLIT AQAAMDYGREVFAVPGSIFQSFSTGCHELIQDGAKCVQTIDDICEEL >gi|307679278|gb|GL456449.1| GENE 200 188552 - 189205 591 217 aa, chain + ## HITS:1 COG:SP0288 KEGG:ns NR:ns ## COG: SP0288 COG1266 # Protein_GI_number: 15900222 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Streptococcus pneumoniae TIGR4 # 2 217 4 216 230 82 30.0 8e-16 METLVRKRWLFGMQLLGFLILDQIPLMMVSVVQFSTENFWFRFVSGLVAVGLGAYFVYLF VAFLKKKKLITWTFLGIKETLPVVLLGLVIIFCVGILGDFLLRLEGLETTSNQQSVEEIV QAIPKGLILIFAGVIGPIFEEGIFRVGIQAFFKPASKIGILVSSILFALVHTPTDIGSFV IYWGMGLALSWVYLRTGRFEAAVLTHFVWNVIGILML >gi|307679278|gb|GL456449.1| GENE 201 189390 - 191468 2265 692 aa, chain + ## HITS:1 COG:L0298_1 KEGG:ns NR:ns ## COG: L0298_1 COG0550 # Protein_GI_number: 15673212 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Lactococcus lactis # 4 574 26 589 589 810 71.0 0 MAYKYLVIVESPAKAKTIEKYLGRNYKVVASVGHIRDLPKSKMGIDIENNYEPHYISIRG KGDVIKSLKAAAKKAEKVYLAADPDREGEAIAWHLAYLLGLDLKDKNRVVFNEITKEAVK AAFKEPRTINVDLVDAQQARRILDRLVGYSISPILWRKVKKGLSAGRVQSVALKMIIDRE NEIREFKPEEYWSIDGNFQKGRKKFKANFWGVDGKKKKLPNAEAVKEITSRIDGKDYDVT KVEKKERKRNPALPFTTSSLQQEAARKLNFRTRKTMMVAQQLYEGIALGKQGTVGLITYM RTDSTRIADSAKAEAAEFIEKTYGDEFSAHGGRKAKNTQGAQDAHEAVRPSSVLRTPDEM KKYLDKDQLKLYTLIWSRFVASQMTPAILDTMKVTLQQNGVTFIANGSKVKFKGFMQVYV EGRDDGKEDKENILPELVEGDVVKSVDIEPKQHFTQPPARFSEATLIRTLEENGVGRPST YAPTLETIQRRYYVKLTNKRFEPTELGEIVNSLVSEFFPQIVDTHFTATMETDLDKVGEG QEKWVEVVDRFYKPFEKELTNAEEKIEKIQIKDEPAGFDCELCGHPMVIKLGRYGKFYAC SNFPDCRNTKAIVKEIGVTCPVCHEGQVIERKSKKNRIFYGCSRYPECDFTSWDKPVGRP CPKCGQYLVEKKVKGGKQVVCINGDYEENVQK >gi|307679278|gb|GL456449.1| GENE 202 191576 - 192883 1539 435 aa, chain + ## HITS:1 COG:lin1315 KEGG:ns NR:ns ## COG: lin1315 COG1206 # Protein_GI_number: 16800383 # Func_class: J Translation, ribosomal structure and biogenesis # Function: NAD(FAD)-utilizing enzyme possibly involved in translation # Organism: Listeria innocua # 1 434 1 434 434 650 73.0 0 MTKKVTIIGAGLAGSEAAWQVANAGVPVDLYEMRPVKKTPAHQTENFAELVCSNSLRGNS LTNAVGVLKEEMRRLNSIIIGSADQTAVPAGGALAVDRDSFSETITEKIKSHPLITIKNE EITDIPEGIVIIATGPLTSESLSQKIQEFNGSEGFYFYDAAAPIIDKSTIDMDKVYLKSR YNKGEAAYLNCPMTEEEFNAFHEALVNAEVVPLRTFEKEKFFEGCMPIEVMAQRGIKTML FGPMKPVGLEDPKTGKRPYAVIQLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLEN AEFVRYGVMHRNSFMNSPELLKPTYQSKKRDDLFFAGQMTGVEGYVESAASGLLAGINAA RLAKGEEPIEFPRETTLGSMAYYITHAEGKHFQPMNANFGLFPELPERIRDKKERYEAIA NRALDVQAQVIQSLD >gi|307679278|gb|GL456449.1| GENE 203 193095 - 193994 903 299 aa, chain + ## HITS:1 COG:lin1316 KEGG:ns NR:ns ## COG: lin1316 COG4974 # Protein_GI_number: 16800384 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Listeria innocua # 2 299 3 300 300 312 54.0 5e-85 MEEKNWPELFARYLIVERGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLS ELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDA LFESAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVP FGSFAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNA EIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHPRA >gi|307679278|gb|GL456449.1| GENE 204 194023 - 194571 804 182 aa, chain + ## HITS:1 COG:lin1317 KEGG:ns NR:ns ## COG: lin1317 COG5405 # Protein_GI_number: 16800385 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent protease HslVU (ClpYQ), peptidase subunit # Organism: Listeria innocua # 5 182 2 179 179 244 71.0 9e-65 MVESQFHSTTICAVEKDGKFAMAGDGQVTMGESVVMKGTAKKVRRIYNDEVVVGFAGSVA DAFTLEEKFEGKLNEYNGNLTRAAVELAQEWRTQQSMQKLEAMLIVMNKEEMLLVSGTGE VITPDDGILAIGSGGNFALSAARAMKNFGDKEMPAKEIAKNALNIAADICVFTNHNIIVE EL >gi|307679278|gb|GL456449.1| GENE 205 194586 - 195989 1348 467 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 7 467 9 466 466 523 59 1e-147 MNELNKTPKEIVKELDQYIVGQQAAKKSVAVALRNRYRRLQLEENMQQDITPKNLLMIGP TGVGKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKQQYSR VYAQALKKANQRLVKVLVPGIKKEQKQAGGNQFEQMMNMFNMAQQQQEAQEEVTEDIRTN RRTILEQLEKGLLDNREVTIEIEEPKKTMPAMNNGLEQMGIDLNETLGALSPKKKIERTV TVKEAQELLVKEESAKIVNDADIHSEAIRLAESSGIIFIDEIDKITSKSQQNSGEVSREG VQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDDLT ADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIERLAHIAYDVNRDTDNIGARRLH TILERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIVQNEDLSRYIL >gi|307679278|gb|GL456449.1| GENE 206 196010 - 196792 905 260 aa, chain + ## HITS:1 COG:SPy1777 KEGG:ns NR:ns ## COG: SPy1777 COG4465 # Protein_GI_number: 15675618 # Func_class: K Transcription # Function: Pleiotropic transcriptional repressor # Organism: Streptococcus pyogenes M1 GAS # 1 260 1 259 260 273 56.0 2e-73 MATLLEKTRQVNELLQKNNLFDVQAELPYNKMAMILGDILESNAYIISSSGDLLGYTEKL DVNNARIKNMFKEKKFPQGYTEAVDMLKVTEANIPIDSDLTAFPFESRELYPFGLTTIVP LYGAGKRLGTIILARVEKSFNEDDLVLAEYSATVVGMQILYHQSRTIEAEVRSATAVQMA INTLSYSELKAVHAIFEALDGEEGRLTASSIADEIGITRSVIVNALRKLESAGIIESRSL GMKGTYLKVLNQQFIKELEK >gi|307679278|gb|GL456449.1| GENE 207 196826 - 197701 1060 291 aa, chain + ## HITS:1 COG:lin1322 KEGG:ns NR:ns ## COG: lin1322 COG2017 # Protein_GI_number: 16800390 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Listeria innocua # 3 290 2 289 290 258 43.0 1e-68 MTVQIENEFLIATFAEEGAELVSLQSKETGIEYIWQGNPEFWARHAPVLFPIVGRLKEDT YMYQNQAYHLTQHGFARDQVFDVIEKGGEEVSFSLKSTKETKKKYPFDFELVITYTLEHQ ELTVNYQVENTGKEEMYFGIGGHPAFNVPLESSLTFEDYYLSFSPKKSRTQIPLAGPFID LANKTLAQTNTSFDLTHQLFENDAMIFETKGQTAITIATDESDHQVTLSYPEMPFVGIWS PTPKEAPFVCIEPWCGIADAVDATGQLAEKFGINKLPANELFKTQYMISVK >gi|307679278|gb|GL456449.1| GENE 208 197743 - 198372 785 209 aa, chain - ## HITS:1 COG:SP0851 KEGG:ns NR:ns ## COG: SP0851 COG0344 # Protein_GI_number: 15900736 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 1 205 1 204 213 194 53.0 8e-50 MKIVILLLVAYLLGSIPSGVWIGKLFFKKDIRQFGSGNTGTTNTFRVLGKPAGITVLLMD ILKGTLATSLPYLFGLQGVNPLFFGVAAVLGHTFPIFANFKGGKAVATSAGMLLAYSPTF FIYSALIFVICLYLTSMVSLTSMISAVLITLSTIILPFTVPAILPTFNWLLTVIAIALTT FIFVRHRENIQRIKNGTESRLSFGLRAKK >gi|307679278|gb|GL456449.1| GENE 209 198924 - 199883 1151 319 aa, chain + ## HITS:1 COG:BS_yvrC KEGG:ns NR:ns ## COG: BS_yvrC COG0614 # Protein_GI_number: 16080371 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Bacillus subtilis # 21 315 20 314 314 154 32.0 2e-37 MKKFTLTMMTLGLVATLGLAGCGKQEKKATTSSEKTEVTLPTKDRSGKEITLPKEATKII SLVPSTTEVIEDLGKTDQLIAVDTQSSTMMTDLKKLPQMDMMAVDAEKLIALKPQIVYVN DINLASSESVWKQVEDAGITVVNIPTSTSIKAIKEDVQFIADSLSEHEKGQKLIKTMDQE IDEVAKIGKTIKKPKTVLFEVAALPDIYSFGNGTFLNEMIETIGAKNVLANEKGWLPVTE EAAIAAKPEVILTNVNYMKDPAKEILARKNWENVPAVQNKEVFEIDNMSSSLPNNHITKA LKQMAKAVYPEEYKDLKDE >gi|307679278|gb|GL456449.1| GENE 210 199876 - 200883 965 335 aa, chain + ## HITS:1 COG:BS_yvrB KEGG:ns NR:ns ## COG: BS_yvrB COG0609 # Protein_GI_number: 16080370 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Bacillus subtilis # 18 330 29 346 353 201 40.0 2e-51 MSKKTCLILMLLISMSMLFLGIKIGSVQISLTDLLQILVKKTVSEDGILEGIIWNVRLPR VVMAYLVGAGLAVSGTVMQSLLGNPLASSYTLGVSAGASLGAALIMVTGVTASILGAFLL PLTGFIFGLATVFLVLLFTQTMDSQMSNQTVVLVGMIMTLFVGAILTLITALFQDYLKQL VFWQMGSFSGSNWQKIAIYCPILLVSSLFLWFDANALDVLGLGEEHAMLAGVEVKTAKLR IILLASLLAGSAVSFVGVIGFVDLIAPHIVRRYLGATHRWLIPGSAILGGTIMVIGDTIA RTILSPREIPIGAVTALIGAPFFLYIYFKKRGVAA >gi|307679278|gb|GL456449.1| GENE 211 200880 - 201647 220 255 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 226 1 226 245 89 29 2e-16 MIELKKTAVTLQQTPILKDISLVFPTGSKTCILGPNGCGKTTLLKTIAGLVPYSGSVLID GQEVHGQKRKELATKVAMMSQFTTVAFDYTVYETVLMGAYRQQAQRFLPIVSKQEKERVL YYLERTGLLPLKDKVVNQLSGGQQQRVFLAKLFVQDPEIILLDEPNNHLDIRYQQELIQQ LNEWSAQEGKTLIGVFHDIRLALTLSEKIVFMKQGKVAAQGDFQTLASKEFLQTIFETDI VSYFQKQHKVWETIQ >gi|307679278|gb|GL456449.1| GENE 212 201777 - 202232 601 151 aa, chain + ## HITS:1 COG:lin1109 KEGG:ns NR:ns ## COG: lin1109 COG4917 # Protein_GI_number: 16800178 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Listeria innocua # 5 147 1 143 143 163 56.0 1e-40 MEVAMKRIILMGAIGCGKTTLCQALQGKELIYDKTQAVEFHTEMIDTPGEFILHRQYYNA LNVTAAEADVIGLVQSAVETQQVFSPGFGSIFPKEIIGILTKIDLAQDSQQLEIVRQQLK SAGATRIFEISSVEKIGLQELVDYLEEDEAE >gi|307679278|gb|GL456449.1| GENE 213 202229 - 202810 826 193 aa, chain + ## HITS:1 COG:lin1172 KEGG:ns NR:ns ## COG: lin1172 COG2096 # Protein_GI_number: 16800241 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 190 1 188 188 206 55.0 2e-53 MKIYTKTGDKGMTKLVGSSTVAKDSDRVESYGTIDELNSWVGYIISQLPQENQGIKEELE ALQHLLFDAGTDLSTPIEAQRPFKLQKESVHWLEQRIDFYTAQSPDIDRFILPGGTSAAS MVHVARTIARRAERIIVRLNWTAKINEEVLIFTNRLSDYFYALARYLNVQAQRPDVFYER SEKVFHKIKEDGL >gi|307679278|gb|GL456449.1| GENE 214 203297 - 204427 1159 376 aa, chain + ## HITS:1 COG:lin1135 KEGG:ns NR:ns ## COG: lin1135 COG1454 # Protein_GI_number: 16800204 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Listeria innocua # 1 376 1 378 379 408 55.0 1e-113 MKTIHFPTELWVGEGALANLETLHDRRVFIVTDPFMVDSGFVNEVTKHLTKSEWQIFSDI IPDPPIDKIAAGIKQLAAFQGDTILALGGGSAIDAAKAMKFFGKRTLQTQIAEFIAVPTT SGTGSEVTNFSVITVAETGTKIPLVTDEIQPEIAILDTNLVMSVPPKITADTGMDVLTHV IEAYVSTEANPISDALCEKVVRLVFDNLEIAFNEGSNQQARENMHLASCMAGMAFNVTSL GLNHGIAHAAGARLHVPHGRMNAMLLPEVIAYNSGLANGKVTNEPTAKRYAQLANCLNDT QTTNARIGVQQFIRQIKQLRQKLNMPATFSDYGLPKEEVQAAIPKIAEGALMDGCTKTNP VQPTAAEVTKILNSIL >gi|307679278|gb|GL456449.1| GENE 215 204587 - 204934 405 115 aa, chain + ## HITS:1 COG:lin1108 KEGG:ns NR:ns ## COG: lin1108 COG4810 # Protein_GI_number: 16800177 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Listeria innocua # 2 115 5 116 116 150 72.0 7e-37 MEEKQRMIQEYVPGKQVTLAHIIASPNKEIYTKLGLPDGTSNALGILTITPSEAAIIAVD IATKSGDIQIGFIDRFSGSVVISGDVSSVEAALQAVIEGLQQILNFSVTCKITRT >gi|307679278|gb|GL456449.1| GENE 216 204962 - 205534 709 190 aa, chain + ## HITS:1 COG:lin1136 KEGG:ns NR:ns ## COG: lin1136 COG3707 # Protein_GI_number: 16800205 # Func_class: T Signal transduction mechanisms # Function: Response regulator with putative antiterminator output domain # Organism: Listeria innocua # 1 190 4 193 193 241 69.0 8e-64 MDGRIVIVDDEPITRLDIRDIVIEAGYEVVGEAADGFEAIEVCKKTQPDLVLMDIQMPIL DGLKAGKKIVQDQLASSIVFLSAYSDVQNTDKAKKLGALGYLVKPLDEKSLIPTIEMSIE RGKQTQLLLSQIDKLSLKLEERKIIEKAKGILVKENHISEEEAYQMLRTLSMNKRARMSE IAELIVMDDE >gi|307679278|gb|GL456449.1| GENE 217 205535 - 206968 1190 477 aa, chain + ## HITS:1 COG:lin1137 KEGG:ns NR:ns ## COG: lin1137 COG3920 # Protein_GI_number: 16800206 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 2 472 3 479 485 404 48.0 1e-112 MKRLEQLCHQYTNLSESDIKELQRTARYLSSTTLYQSADVFIDVYKEMSQQALVVYHKPS AKTTSLYSGDVVGMEALLKNEPGVLRTMQTSLNSIGLLAVTQENRLIKQNIYPIRNEHRT IGVIIVEIAADEEIQADLQKEELNNCQLAKVAKSTSQVDALFIDQLAEAVLIFDAAGHLL ITNHNAQELYRKLGYRDNIIGMSYDNLSIDYTTFEYVLYQMKYKMSNQPIESKTTYLNYY FKVRKVWLASEEQLIMIIQDNTEFKEKEAEIISKSVAIREIHHRVKNNLQSVVSLLRIQE RRTQSPEAKKVLHESVNRIMAIAATHELLSKQVKDDVALRQTLEAVMYNFRHLFQGAQPI EMMMDVDPAIMVSSEQMVTISLVVNELLQNIFDHAFEPQTSGVVKLSGTLDNKMITITVT DNGKGYDVHQSNETSLGLMIVKSYVRDKLKGKITIESNKQGTKTCFYFEQNTSDVVH >gi|307679278|gb|GL456449.1| GENE 218 207059 - 208483 1573 474 aa, chain + ## HITS:1 COG:lin1138 KEGG:ns NR:ns ## COG: lin1138 COG4819 # Protein_GI_number: 16800207 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition # Organism: Listeria innocua # 4 474 3 473 473 563 61.0 1e-160 MSKETLLTVGIDLGTSTTQLVLSELTVENFASAFTVPRISISDKKVIYRSDIIFTPLLNQ SEIDAEPIKAFVAEQYRQAGIHKQDIQMGAVIITGETARKSNANNVLRALSGYAGDFVVA TAGPDLESIIAGKGAGAQTYSETKRKPVVNLDIGGGTTNLAVFKDGEVIDTACFDIGGRL IKLDQQQKITYIAPKIQEIINKKGLTLHLGDQATEQNLLPIISELVAVLENSIGLGTQSP FYQLLVTNHPLRKGEELPIVTFSGGVADCLNTTSTNLFKYGDIGLLLGKYLRKSLIFSEK EVLESAETIRATVVGAGSHTAEISGSTIAYREQILPVKNIPILKLAQEDETLTVTELGQR IQEKLNWHRIEETPQIALAIRGMNNPTFADIQRYGQGIVEGLANLVAEQIPIIVMVDEDM AKALGHALSAHLPKDYPFICLDSVKVENGDYVDIGLPVAEGAVLPVIVKTLVFN >gi|307679278|gb|GL456449.1| GENE 219 208501 - 209865 1627 454 aa, chain + ## HITS:1 COG:lin1139 KEGG:ns NR:ns ## COG: lin1139 COG4303 # Protein_GI_number: 16800208 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine ammonia-lyase, large subunit # Organism: Listeria innocua # 1 454 1 454 454 753 79.0 0 MILKTKLFGKVYQFTSVKEVLAKANEEKSGDKLAGVAANSAEERVAAKVVLSELSLNDLF NNPVVDYDEDEVTRIIIDQVNMRIFESIKHWTVAELREFILSSETTDFDIKRISRGLTSE MIAAVCKLMSNMDLIVGAKKINIEKTANTTIGRPGTFSNRLQPNHPTDNVDGIMASVMEG LSYGAGDALIGLNPVDDSTESVKRILNKFEEFRSEWEIPTQTCVLAHVTTQMEAMRQGAP TGLVFQSIAGSEKGNTAFGLNTEILAEAQDLALHSGQAAGPNVMYFETGQGSELSSEANF GADQVTMEARCYGLAKKFDPYIVNTVVGFIGPEYLYDSKQVIRAGLEDHFMGKLTGISMG CDVCYTNHMKADQNDMENLAMLLATAGCTYIMGIPHGDDVMLNYQTTGFHETATIRETLG LRPIKEFEEWMEKMGLMENGKLTSRAGDASVFIK >gi|307679278|gb|GL456449.1| GENE 220 209883 - 210794 1240 303 aa, chain + ## HITS:1 COG:lin1140 KEGG:ns NR:ns ## COG: lin1140 COG4302 # Protein_GI_number: 16800209 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine ammonia-lyase, small subunit # Organism: Listeria innocua # 1 300 1 293 293 405 72.0 1e-113 MNEKELKEMIAGILTEMVADNQAVSTATVTAEEKPVTTHVTETTEIEEGLIPDITEVDLR KQLLLKNAVDPEALLKMKAFSPARLGVGRAGTRYMTSSTLRFRADHAAAQDAVFSDVSED LVKEMNFISTKTICNSKDEYLTRPDYGRQFDEENSEIIRKNTTPKAKIQMVVGDGLSSAA IEANIKEVLPAIKQGLNMYNLDFDNVVFVKYCRVPAMDKIGEITDADVVCLLVGERPGLV TAESMSAYIAYKPTVGMPEARRTVISNIHKGGTPAVEAGAYIAEIIKKMLDKKKSGIDLK EAE >gi|307679278|gb|GL456449.1| GENE 221 210808 - 211461 1023 217 aa, chain + ## HITS:1 COG:lin1141 KEGG:ns NR:ns ## COG: lin1141 COG4816 # Protein_GI_number: 16800210 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Listeria innocua # 1 217 1 217 217 290 76.0 2e-78 MKNDRLGANVLSMKVIPNVDPALAKELSLKPEHRSLGIVTSDCDDVTYVALDEATKAADV TVVYGKSMYAGAANASTKLAGEVIGIIAGPSPAEVNSGLSVITQVIEEEASFYSANEDDS IVYFAHVVSRTGSFLSEQANIPEGEAIAYLIAPPLEAMVGLDAAMKAADVQMGVFYGPPS ETNFGGALLTGSQSACKAACSAFEQVIQNIADNPLSY >gi|307679278|gb|GL456449.1| GENE 222 211475 - 211993 794 172 aa, chain + ## HITS:1 COG:lin1142 KEGG:ns NR:ns ## COG: lin1142 COG4577 # Protein_GI_number: 16800211 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; C Energy production and conversion # Function: Carbon dioxide concentrating mechanism/carboxysome shell protein # Organism: Listeria innocua # 2 169 4 165 165 118 46.0 7e-27 MKALGMVEVKGFLGAISVADAALKAADVTLLKAEIINGGLTTVELIGDVAAVQAAVEVGT EVAEELNCLIAHHVISRVDAQTEVILSDPEPKSAPEPMEQIEVIEEEIETPDLEEHTGTR QKLETQRVVDLRKQAYKMNLSSLKKSEIKFANKEALIQAIMAEIERSEDEWN >gi|307679278|gb|GL456449.1| GENE 223 211984 - 213462 1492 492 aa, chain + ## HITS:1 COG:lin1143 KEGG:ns NR:ns ## COG: lin1143 COG1012 # Protein_GI_number: 16800212 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Listeria innocua # 1 491 1 485 486 639 68.0 0 MELVDKDLRSIQETRNLIRKAKEAQQVLATFSQKQIDAIVQAVSEATFNQREKLAKMANE ETGFGIYEDKIIKNAFASKVVYDEMKDKATVGVIHDDAAKKVTEIAVPVGVIAGLIPSTN PTSTVIYKALISLKAANSIVFSPHPNALKSIIETVEIIQKAAIAAGAPEGCVSVIKTPTM QATSELMKNKETNLILATGGNAMVKAAYSSGTPAIGVGPGNGPAYIERSANVPHAVKQIM DSKTFDNGTICASEQSIIVETVNREAVKEELIKQGAYFLSPAEADKLAKFILRPNGTMNP QIVGRSVQHIASLVGLSIPKDRRLIVAEETHVGLKYPFSREKLAPIIAFYTVENWEAACA LSIEILKGEGAGHTMGIHTENKEVIREFGLRKPVSRLLVNTSGTLGGIGASTNLVPALTL GCGAVGGSSTSDNIGVENLFNLRRVAYGVRDLEEIRQEFGQTSTTSVATSCETTNQEELV NAVVAQVLARLN >gi|307679278|gb|GL456449.1| GENE 224 213586 - 213876 503 96 aa, chain + ## HITS:1 COG:lin1144 KEGG:ns NR:ns ## COG: lin1144 COG4577 # Protein_GI_number: 16800213 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; C Energy production and conversion # Function: Carbon dioxide concentrating mechanism/carboxysome shell protein # Organism: Listeria innocua # 1 92 1 92 94 113 91.0 8e-26 MSSTNALGMIETRGLVGAVEAADAMVKAANVTLIGKEQVGGGLVTVMVRGDVGAVKAATD AGAAAAERVGELLSVHVIPRPHTEVDAILPHATTEL >gi|307679278|gb|GL456449.1| GENE 225 213944 - 214507 283 187 aa, chain + ## HITS:1 COG:no KEGG:EF1622 NR:ns ## KEGG: EF1622 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 8 187 1 180 180 305 99.0 4e-82 MTVITEDMLRIKRLKKELEDGTDFVFPVGSFLTPAAKSYLREHRINSSFSSTNPLLSEVH SVKASSQKQEHLSKETIYEIRHLSHLLYLPFLTNEALSTEGWLYFEQQQQWLEKFILEQS LVMEPVILESKVTILTNQQRQWRYSSKEIQLQLDKIILQLKGESQLFGLFQSWATELIST MAEISRN >gi|307679278|gb|GL456449.1| GENE 226 214520 - 215146 795 208 aa, chain + ## HITS:1 COG:lin1146 KEGG:ns NR:ns ## COG: lin1146 COG4869 # Protein_GI_number: 16800215 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Propanediol utilization protein # Organism: Listeria innocua # 4 208 6 208 213 270 65.0 2e-72 MDSMNEIVEEVVKRIQQQQQNTFEVEASGRHVHLSRQEIDALFGPGYQLTKVKDLSQPGQ FVCKERITVAGPKGLFQNVVILGPERSESQVEVSMTDTRILGINAPVRESGKTEGTPGVT LMNGSAVVTLSHGLIVAKRHIHMTPEDALKNKVSNSQIVQVKVEGTRPLIFDDVVVRISP RFATYMHIDYDEANACGLTKGARGYILK >gi|307679278|gb|GL456449.1| GENE 227 215161 - 215760 425 199 aa, chain + ## HITS:1 COG:no KEGG:EF1620 NR:ns ## KEGG: EF1620 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 199 1 199 199 360 99.0 2e-98 MNVSEMENLIQQITDQICQQLLSSSYSVALAEAKEAFPEEMFVRFPDVNWVTKEQKLARG LVVKRLTISQVNAIAHLQETDELVKNILAFLFEGKPVLVLTPIPSVTKNSRLKYRLKQTI QENVDMCQQFGLIFYHDSENYAVFQAACQKQLRSLAETKRTYITEKQLIRMTESGVSLSK NAYLTPLAKDYARKHQLLT >gi|307679278|gb|GL456449.1| GENE 228 215773 - 216036 451 87 aa, chain + ## HITS:1 COG:lin1148 KEGG:ns NR:ns ## COG: lin1148 COG4576 # Protein_GI_number: 16800217 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; C Energy production and conversion # Function: Carbon dioxide concentrating mechanism/carboxysome shell protein # Organism: Listeria innocua # 1 85 1 86 89 95 59.0 3e-20 MLLGKVTGSLWSTRKDEKLNGWKFMMVDILNQEDEKQGFLIAADNAGAGVGDKVLISQGN AARISAEDPNVPIDAMIVGVIDSTEEE >gi|307679278|gb|GL456449.1| GENE 229 216049 - 217149 1702 366 aa, chain + ## HITS:1 COG:lin1150 KEGG:ns NR:ns ## COG: lin1150 COG3192 # Protein_GI_number: 16800219 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Listeria innocua # 1 360 1 360 373 445 79.0 1e-125 MSINEIIMYIMVLFMIIGGIDKCIGNKLGLGEQFEEGIMAMGSLALSMVGIITLAPVLAN LLSPIVVPVYELLGADPAMFATTLLANDMGGFALAQQLANDPQAGLFAGAILGAMMGPTL VFTIPVALGIIQKDDQQFLATGVLSGIITIPFGLLAGGLTAGMPLSLIIPNLIPIIIVAA LIILGLWLAPKGMIKGFQIFGQGVVIVAIFGLVVGAIQLLLGITVIPGIAPVTEGIEVVG GIALTLAGAFCLVAVITKVFNKPLMKLGKVLGMNEVAAAGMVATLANNIPMFQMLKDMDN RGKIINIAFAVSASFVLGDHLGFTAGVAKEMIFPMIVGKLVGGITAIFVAIFMANRMLGK PETEVK >gi|307679278|gb|GL456449.1| GENE 230 217162 - 217605 594 147 aa, chain + ## HITS:1 COG:lin1151 KEGG:ns NR:ns ## COG: lin1151 COG4766 # Protein_GI_number: 16800220 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Listeria innocua # 1 147 1 148 148 207 68.0 7e-54 MTELNREMIETLVRQIVTEKLMPTKQVDPSGIMSIKLPEIDVTEDDRLDTGNPADIVYTK DLFSLEESPRLGCGLMVMKDTTFDWTLEYDEIDYIISGQLDILIDGRKISATAGEIILIP KSSKIQFSVTGDARFVYVTYPADWQSQ >gi|307679278|gb|GL456449.1| GENE 231 217693 - 218121 600 142 aa, chain + ## HITS:1 COG:L158834 KEGG:ns NR:ns ## COG: L158834 COG1832 # Protein_GI_number: 15672137 # Func_class: R General function prediction only # Function: Predicted CoA-binding protein # Organism: Lactococcus lactis # 3 136 4 138 145 161 58.0 4e-40 MTFENPSQNQIFDILKQAKNIAVVGLSNKPDRTSYKIAEILQQHGYRVLPVNPVLKGETV LGETVYGTLTEIPEKIDIVDVFRRSEFLPEVAAETLKTEAPVFWAQLGLENEEAANLLLN EGRQVIMNRCIKIELAKMADAE >gi|307679278|gb|GL456449.1| GENE 232 218326 - 220383 2558 685 aa, chain + ## HITS:1 COG:L0290 KEGG:ns NR:ns ## COG: L0290 COG0187 # Protein_GI_number: 15672961 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Lactococcus lactis # 7 643 6 641 644 962 77.0 0 MAKKINNEYNDASIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGN EINVTIQKDNSICVADSGRGMPTGMHASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGV GASVVNALSKWLEVHIVRDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDDTIF STTNFSYEILAERLRESAFLLKGVKITLTDERGEEPKEEVFHYEEGIKEFVAYLNEEKDT LTPVVYFSGAKEGIEVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKAYNEY ARKVGLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVDNVVG EQMGFYLQENSEMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQS RNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIY TIGAGVGPEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPP LYKVSKGTGKKSVIEYAWTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETR TLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIEQHVQFTLEEDGSILDRSEEDTSAPTGE SLLDAEKTKEAEQTDDTEISLFDIE >gi|307679278|gb|GL456449.1| GENE 233 220396 - 222858 2736 820 aa, chain + ## HITS:1 COG:SP0855 KEGG:ns NR:ns ## COG: SP0855 COG0188 # Protein_GI_number: 15900740 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Streptococcus pneumoniae TIGR4 # 7 817 4 823 823 967 60.0 0 MEKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDK GFRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMR YTEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATE IPTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVI LRAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQ IVVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVI INRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAE AIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQYGNP RLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEGDFLL YAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAVYPYK ELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLL DVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVIVTQR GGVKRMLAQELTQLGRAKRGLMVLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSK NYPISERTSNGSFVIDEQKDGQVMEVHEMHSAVIEEEQTN >gi|307679278|gb|GL456449.1| GENE 234 223148 - 225394 2503 748 aa, chain + ## HITS:1 COG:lin1443 KEGG:ns NR:ns ## COG: lin1443 COG1882 # Protein_GI_number: 16800511 # Func_class: C Energy production and conversion # Function: Pyruvate-formate lyase # Organism: Listeria innocua # 2 748 3 743 743 953 61.0 0 MKQWEGFKGDKWRTSVDTRDFIQNNYTEYKGDDSFLEPIAPSTDKLWTKLQELFEIQHEK NGVYDMDSDIPATITSHEPGYLIKEEEKIVGLQTDVPLKQAFMPFGGIKMANNALVSNGY ETDEEMTKIFTEYRKTHNQGVFDAYTAEMRLARKNKIITGLPDAYGRGRIIGDYRRIALY GIDYLMEQKKKDHDNTGNKEMTDDVIRLREEISEQYRALNDLKQMAASYGFDISRPAANA QEAIQWLYFGYLGAIKSQNGAAMSIGRISAFLDIYIQRDLEAGLITEFEAQEMIDHLIMK LRMVKFARTPEYNQLFSGYPIWATLSIAGMGIDGRSLVTKNDFRILHTLTNMGPSPEPNL TVLYSSHLPEGFRTYAAKIAKESSSIQFENDDLLRENWGSDDCAIACCVSATVMGKDMQF FGARANLAKAVLYAINGGVDEKTKMQVAPKYRPMTGDKLDYHEFMERYKDILDWLAELYV NTLNIIHYMHDKYAYEAPQLALMDTDLQRTFATGIAGISHATDSIMAIKHGEVEVIRDED GMAIDYVPTKEFPTYGNDNEEADAMANWILDYFMTQIKRQHTYRNSKPTTSLLTITSNVV YGKATGNTPDGRRAGKPLAPGANPSYQDGKFLGEKNGLLASLNSTARLEYTIALDGISNT QTINPNGLGKDDDTRINNLRNVLDGYFDKGGYHLNVNVFTNELLLDAQAHPEKYPNLTIR VSGYAVKFRDLTPEQQADVISRTSHDRL >gi|307679278|gb|GL456449.1| GENE 235 225471 - 226235 723 254 aa, chain + ## HITS:1 COG:SP1976 KEGG:ns NR:ns ## COG: SP1976 COG1180 # Protein_GI_number: 15901799 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyruvate-formate lyase-activating enzyme # Organism: Streptococcus pneumoniae TIGR4 # 5 254 11 261 264 355 64.0 3e-98 MTTPVTGRIHSTENFGTVDGPGVRFIVFTQGCRMRCQFCHNPDTWKIGSGGRVVTTDEVL EEALRFRSYWGEKGGITVSGGEPLLQMDFLIDLFKKAKAQGIHTTLDTCGKPFTREEPFI SQFDELMKYTDLLLFDIKHIDNEQHKLLTTQSNDNILEMATYLSEIDKPVWIRHVLVPQR SDYDEYLIRLDAFIKTLNNVDKVEVLPYHTMGKYKWEELGIPYPLEGIEPPKNDRVENAK KLLHVEDYQGYLAR >gi|307679278|gb|GL456449.1| GENE 236 226331 - 227257 1300 308 aa, chain + ## HITS:1 COG:SP1534 KEGG:ns NR:ns ## COG: SP1534 COG1227 # Protein_GI_number: 15901378 # Func_class: C Energy production and conversion # Function: Inorganic pyrophosphatase/exopolyphosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 308 1 310 311 377 65.0 1e-104 MSKILVFGHQNPDTDAIGAAISFAYLQKELGKETEAVALGTPSEETQYALDYFNIEAPRV VTEAASETNQVMLVDHNEFQQSISDIAEVNILAVVDHHRIANFETADPLYYRAEPVGCTS TIIYKMFKENNVTIPAQIAGMMVSAIISDTLLFKSPTCTQEDIDAAHALGDIAEINLEGY GLDLLKAGTNLSDKSAEVLLDLDAKSFPMNGKTVRVAQVNTVDLAEVLDRQAELEAAMAA ENAANNYDLFVLIITNILDSDSELLAIGAEQAKIEAAFNVTLVNNRAFLPGVVSRKKQVV PQLTEVFN >gi|307679278|gb|GL456449.1| GENE 237 227329 - 228213 731 294 aa, chain + ## HITS:1 COG:no KEGG:EF1610 NR:ns ## KEGG: EF1610 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 294 1 294 294 528 98.0 1e-148 MNDLAIYYHSPQQTKQYNHLLNQSLFFPLVTFMYEHREERIILRQLKAAFATEAKLEQFL SEMIDCQLIIRENRQYRLNFPIYTAAEVASLTLAEDELPKFKGTVTEQLFWLAESFWPQV FPEEEDYFFGVSGGPSFYQKQRLASAQLSMITLEKEKTEVPTMPRYFDYLGKEQPLPEAF SALYDLLGDVNPEYYLSQARRVIKQALRGRKVSTVPNIFQESLHLTQVITIDQDHLKLLL PVATEQAEPLEAQSDILAFYYEKIANRSAIERLVFMQQLIEQLGTNSLSYLRIN >gi|307679278|gb|GL456449.1| GENE 238 228272 - 228823 583 183 aa, chain - ## HITS:1 COG:SA1727 KEGG:ns NR:ns ## COG: SA1727 COG4843 # Protein_GI_number: 15927485 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 7 177 11 179 200 174 52.0 7e-44 MVVDLKMLAMIFIINFAYITLNTIRFMLTMKGYRVIAPLVSMAEITIYVLGLSMVLNRLD NPLNLLVYALGYAVGISVGIKIEDYLALGYIMVSVILPSTTEQFHLPETLREHGYGVTQS VAYGREGERMVLEILSPRKNERTLYKLINQLEPRAFIISYEPKFISGGFWTKKVRKRNDA ISH >gi|307679278|gb|GL456449.1| GENE 239 229004 - 230464 1391 486 aa, chain + ## HITS:1 COG:L186875 KEGG:ns NR:ns ## COG: L186875 COG1502 # Protein_GI_number: 15673156 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Lactococcus lactis # 11 486 18 487 487 565 56.0 1e-161 MKIFVWILLFLLVINVIAALITVFRKPRSISSVLAWMMTLIFLPGIGFIIYLFCGRGIDG QEVFKLSDDEKQMVQRIKEKVDIDNKKAGRDKRYDLLYDAKVLNRYFRNMDASPLAKRNS LQLFTDGQEKFQALFEDIRAAKETVHVEYYAFFNDTIGNQFLDVLIEKLHEGVEVYLIYD PWGSPGANKKFFARYVDAGGKVAPFITSRDMIRKTRLNYHLHRKIVVIDGKIGWTGGFNV GDQYLNVTEKFGYWRDTHIRLVGTAVFSLQEIFIMDWNASVKYPEERMTYHEKYFKLPED HEVEQLSLQVVSDGPDSEEEILKSGFVRMIFSAEKSVWIQTPYLIPDDSMINALLVAVRS GVDVRIMIPCMPDHPFIYRATQYYANYLHKRGIKIYIYDSGFIHAKTMVIDDELAMVGTT NQDIRSYSLNFEVSTFIYNPDIAWMLAQVFEEDIEKSVLLTDEIIKKQGYWLRFKQNFSR LLSPVL >gi|307679278|gb|GL456449.1| GENE 240 230747 - 232627 1748 626 aa, chain + ## HITS:1 COG:BH0296_2 KEGG:ns NR:ns ## COG: BH0296_2 COG1263 # Protein_GI_number: 15612859 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Bacillus halodurans # 98 472 2 367 368 298 45.0 2e-80 MDYQAIAKEILKDVGGKDNIVDVTHCYTRLRFVLKDTKQANKEVLLQTEGVISVVESGGQ YQVVLGNKVAHVYNALEPLLAQQLTTKTSTKEKNSLGNRILNTVAAIFTPVVPAIAASGM LKGILAIAVMVANNFYQVDLKPLNTYIILSAASDALFYFMPVILGYSAAKVFKTNEYIAM VIGATLCYPTIVSLMTEESAVTLFGLHVTKANYVSTVIPIILAIFMLAYVQRFLEKVIPE VLKIIMVPTLSLLLMIPATLLLFGPIGIYLGDGVNWLYYYIMNLSPILLGGFIGGIWCVL VIFGTHRGLVPIGINDVARTGRQNLLAFAGAANFSQAGAAFGVFVRTKNKDLKAVAASAT VTALFGITEPAIYGANLRLKKPMIYAVASGAAGGALMGWGGSYGTAFANQGLLTIPVYAE AGTKAFICYLLGCGIAFFGAFLLTIFLGFNDLPLDESRQEPVLKTEATTVKEKQRIQAPV QGQLVSLDQINDEVFASQQMGKTLAIYPTEEQIVSPGNGQVTALYPTHHAIGLKLDNGAE ILLHIGINTVELKGRGFETFVKVGERVRLGQKLLSFDKQIIQAAGYDPTVLVIVTNTAEM SVIETTKQTEITLQTNLFFMQVKEQN >gi|307679278|gb|GL456449.1| GENE 241 232627 - 234036 1355 469 aa, chain + ## HITS:1 COG:CAP0010 KEGG:ns NR:ns ## COG: CAP0010 COG2723 # Protein_GI_number: 15004715 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Clostridium acetobutylicum # 2 465 6 466 469 417 45.0 1e-116 MVKQFKNDFLWGASSSAFQIEGAWNEDGKGLTVADYNSFKKSAVQADTKVASDFYHRFKE DIALMKELGLKTYRFSLSWARIIPTGDGEINQSGIDFYNTVIDTLLENDILPFVTLYHFD LPFVLVEKYNGWADRRCVSAFQRYAQVCYQAFGDRVKNWQVTNEQNLMIRVDERMNMYDV APENAEKIRVQMDYHMFVAHALATNDCHQLVVGGKVGPSVSSTMTYPSSNKPEDVWAARM NDNFKTNYALEMYCFGEYPGYYQEYLTKCGIYPETQPEDQAILKAAKPDFIALNYYRTLV ASYLPTDEQHPLGTKEKDIDFDLYGYFKIEKNQHLKTSKYGAQIDPTGLRLVLNDYYRQY RLPLIITENGLGTPDHLTEDGKIHDDYRIAYLHDHIAACHAAISDGVELFGYCPWSVMDI LSSHQGFKKRYGFIYVNREDHELKDLRRIKKDSFYWYQSVIKNNGLPEE >gi|307679278|gb|GL456449.1| GENE 242 234146 - 234307 238 53 aa, chain + ## HITS:1 COG:no KEGG:EF1605 NR:ns ## KEGG: EF1605 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 53 1 53 53 76 98.0 4e-13 MNNYDLWKWAAGKRTEKDKNETYSAKNWWYVLLMLGVFVGIMLLYYLISVLWN >gi|307679278|gb|GL456449.1| GENE 243 234367 - 235347 1027 326 aa, chain - ## HITS:1 COG:SP1725 KEGG:ns NR:ns ## COG: SP1725 COG1609 # Protein_GI_number: 15901558 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 1 320 1 315 321 335 54.0 5e-92 MVVKLTDVAKLAGVSPTTVSRVINNYGYLSQKTIDKVHQAMEELNYQPNGLARSLQGKST QLIGLVFPSVSHPFFGELIETLERKLFVQGYKVILCDSEKDPEKERAYLRMLAANKVDGV ITGSHNLAINEYENVSLPIVSFDRFLAPGIPIVSSQNFQGGQKATEALFASGAQKIAIIT GANNTGAPSDYRLAGYKQTMEKYGAEKTILQIDNGTSTTLKNLEIERLLQNKTVDGIFCT DDLTAITVMNIAQKLKISIPEELKVIGYDGTKLIKRIAPQLSTIVQPIDEMCDVMIDLLL RRMKDPDVALEENYPIPIQLSLSESC >gi|307679278|gb|GL456449.1| GENE 244 235366 - 236838 1030 490 aa, chain - ## HITS:1 COG:SP1724 KEGG:ns NR:ns ## COG: SP1724 COG1621 # Protein_GI_number: 15901557 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-fructosidases (levanase/invertase) # Organism: Streptococcus pneumoniae TIGR4 # 7 486 2 478 484 456 46.0 1e-128 MSSIMNQWTDELRYAPYSSWTSAHLENLTSIIAQSSWRFKYHIQPQTGLLNDPNGFSYFN NQWHLFYQAFPFGSVHGLKSWAHLTSSDLIHWDYEGIALYPDSEYDSHGVYSGSALPIDN QLCLFYTGNVRDQTWQRFAYQNIAWLNSLGAITKESTPFLPIDPNYSSHFRDPMVFPYQE GLVLLIGASDLNGQGKIVVYFSKDRNVHNFHQLGELTFTDQELGYMVECPNLVFIDGQPV LLFCPQGLSPSVKSYQNIYPNMYTLAETFDLENLSLVQAGPFENLDEGFDVYATQAFNAP DGRALAVSWIGLPEITYPSDVEGWANGLSLVKELTIHNGKLFQYPVSETEMLRQSATTLS NGCHFLSTASFELEVDIPKNEIAFIRLLANETGSKGLLITIDMIHGKITLDRTFAGQPFA EKYGTIRETKIRKNKSVQLTIFVDCSVAEIYVNKGEKTMTGRFFPDKAQQYLHLSKTAKA CFYELENTNN >gi|307679278|gb|GL456449.1| GENE 245 237069 - 238742 1581 557 aa, chain + ## HITS:1 COG:BH3868 KEGG:ns NR:ns ## COG: BH3868 COG0366 # Protein_GI_number: 15616430 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Bacillus halodurans # 1 510 1 507 553 432 43.0 1e-121 MNRNWWQKEVAYQIYPRSFSDSNNDGIGDLQGIIQKMDYLENLGITLIWLSPMYPSPMAD NGYDISDYYGISSDFGTMADFDELIEEAKKRNIKVILDLVVNHTSDEHAWFQDVLKNPQS RFRDFYIIKEGREAPTNWRSNFGGSVWEKLPGEDAYYFHAFHKKQPDLNWENPELRKEIY QMIRFWLNKGIAGFRVDAINFIKKDLTWTNLPADGADQLAKVTKASRNMPGMSDFLNELK EKAFAGFDIVTVAEAAGVNYPNLSEFIGETGYFDMIFDFKWADLDVKSGSEWFYRIDWSW NDLRTLIFKQQEAMQKAGWSANFIENHDQPRATTKYLKEQAQQPNAVKTFGAMYFFLRGT PFIYQGQELGMTNFERGSIDEFDDISSIDQYYRAIKEGFTPKEALSLVNLRSRDNARTPF PWNDSMYGGFSSVKPWLGMVDNYKEINAEAEIKNSQSIFHFYKRMIAFRQKSPYTDILLY GTFEGLSNLPDNVIAYKRKLNEKTIYAFFNFGEAVPIPHYLVNGTVIFDTQSEEREQLVQ QGTLLKSYQGLLITINE >gi|307679278|gb|GL456449.1| GENE 246 238759 - 240687 1935 642 aa, chain + ## HITS:1 COG:SPy1815_2 KEGG:ns NR:ns ## COG: SPy1815_2 COG1263 # Protein_GI_number: 15675645 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Streptococcus pyogenes M1 GAS # 103 456 13 360 385 239 38.0 1e-62 MAENYQQAAKDIIQLIGMDNIISVTHCQTRLRFILKDHEQVDGKQLEKIDLVKGVFYNGG QYQVILGTGIVTKVYDEIEKLGINVVSKAEQTAILKNNETGMRKTMRILSEIFIPIVPVI AATGLFLGLKGVIFNDTFLQLFGASVANIPESFQQIVSVITDTVFAFLPALIVWSTFKAF NATPVIGIVIGLMMVSPILPNAYAVATPDSGVKAIMAFGFIPVVGAQGSVLSAIAAGIIG AKIELFFRKKMPNILDQIFTPFMTMLITFLIMILGIGPILHTVELGMVDVVQWLIGLPLG LGGFVIGASYPLMVLIGIHHTLTMVETSLLANTGFNALITICAMYGFANVGSCLAFAKKA QDSKVKSTAIGSMLSQLFGVSEPVLFGLLIRWNLKPLLCVLFTSGLGGAILAIFHIQSNS YGLAVIPSFLMYIYSAHQLVIYLLVALLSVGVCYALTSLFAIPQEVLISDKVIEEEEREV FEMQHNTLDEQLFSPVTGYAMNLTAVNDPVFSSEMMGKGLAIMPTANKVYAPADGLLNLV AETGHAYGIQTDAGAEVLIHIGIDTVTLGQEVFQTQVTQGHRVKKGDLLGTFDRKAIKEA GLDSTVMVIITNTSSYLSVEPMMSDHNEITPEQIILNLNTPN >gi|307679278|gb|GL456449.1| GENE 247 240852 - 240914 122 20 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFDLLALLTGTSTYGNVPHV >gi|307679278|gb|GL456449.1| GENE 248 240996 - 241841 641 281 aa, chain + ## HITS:1 COG:no KEGG:EF1599 NR:ns ## KEGG: EF1599 # Name: not_defined # Def: transcriptional regulator Cro/CI family protein # Organism: E.faecalis # Pathway: not_defined # 1 281 1 281 281 491 100.0 1e-137 MKVAGDKIKQARKLKKITQSELANGICTQATISNIENRNLCDSLDIFSSICLRLDLEVEE CMMISEEKKIENLLNKVEDLSLRLFHLEAYNLLQEVPEGLILSNNELTTKLLYYKGITCL LGKKDKAEALFYLYRGAEIDRKVNIYNILSLNALGTLYELEKDMRKAQVYYEKSLQELEQ FKLECSLERCRIYYNSAKFYSEMKDYQKSVILSEKGIQICRDKHSIYLLDYLLYEKAFNK QMLGEDTADDYRQAYYFTQFFGNTEVLQYIEKDMKAFNISY >gi|307679278|gb|GL456449.1| GENE 249 241974 - 243407 1098 477 aa, chain + ## HITS:1 COG:lin0597 KEGG:ns NR:ns ## COG: lin0597 COG0415 # Protein_GI_number: 16799672 # Func_class: L Replication, recombination and repair # Function: Deoxyribodipyrimidine photolyase # Organism: Listeria innocua # 1 466 1 461 467 527 56.0 1e-149 MKRVMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQESANHNAFFASLASFK ERIDQEAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFEENNIQ SFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSACLFPEE EAAYGEQIARIPLTHYSVGEKTARRCLNTFIDQKLQSYENKRDFPYQDQTSHLSTFLRTG ELSIRTIWQELASAPSSLSKETFKKELAWRDFYNMIYSTFPQQKEEVIQEKFRYIQWTND PEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKM LIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKY IHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKEIHQEMNNPRFK >gi|307679278|gb|GL456449.1| GENE 250 243620 - 245056 1356 478 aa, chain - ## HITS:1 COG:BS_katA KEGG:ns NR:ns ## COG: BS_katA COG0753 # Protein_GI_number: 16077947 # Func_class: P Inorganic ion transport and metabolism # Function: Catalase # Organism: Bacillus subtilis # 1 474 1 475 483 660 67.0 0 MKNQHLTTSQGSPVGDNQNSLTAGEFGPVLIQDVHLLEKLAHFNRERVPERVVHAKGAGA HGVFKVSQSMAQYTKADFLSEVGKETPLFARFSTVAGELGSSDTLRDPRGFALKFYTDEG NYDLVGNNTPIFFIRDAIKFPDFIHSQKRNPRTHLKSPEAVWDFWSHSPESLHQVTILMS DRGIPLSFRHMHGFGSHTFKWVNAAGEVFFVKYHFKTNQGIKNLESQLAEEIAGKNPDFH IEDLHNAIENQEFPSWTLSVQIIPYADALTMKETLFDVTKTVSQKEYPLIEVGTMTLNRN PENYFAEVEQVTFSPGNFVPGIEASPDKLLQGRLFAYGDAHRHRVGANSHQLPINQAKAP VNNYQKDGNMRFNNGNSEINYEPNSYTETPKEDPTAKISSFEVEGNVGNYSYNQDHFTQA NALYNLLPSEEKENLINNIAASLGQVKNQEIIARQIDLFTRVNPEYGARVAQAIKQQA >gi|307679278|gb|GL456449.1| GENE 251 245359 - 246369 1121 336 aa, chain - ## HITS:1 COG:no KEGG:EF1596 NR:ns ## KEGG: EF1596 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 336 1 336 336 523 98.0 1e-147 MLKRKVGIITGVFCSALLLTGCGKSAKDEFIQGIGNQNAQESGVWDFSMSISDMKFSQED SAQTNPMIGMLITQIKDASLSGKIQVDAKKEKAFNLEMKLKAMGMDVPISLVGSLDNEGK EPKLYLATDMMEYIVAVADSMTDGAIDSSQLDTEKLKGKYIDLLAMNEESTKEWQDTIKE YQESEKERKQSAKEYKEFLEGLDKDTFEKKGDTITHTFTKKELQKLIKITTETSEKGKEQ DPFEKIKDVSAKVSVNTKENKTNMLINVKPQQDKNVDMGLESLSSKISITQKAKKATISM PKKENILSEQEVEKIFSDSTSMTGLSTEDTTVAINQ >gi|307679278|gb|GL456449.1| GENE 252 246509 - 246943 493 144 aa, chain - ## HITS:1 COG:SP0740 KEGG:ns NR:ns ## COG: SP0740 COG0494 # Protein_GI_number: 15900635 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Streptococcus pneumoniae TIGR4 # 1 141 1 142 151 87 38.0 9e-18 MNRNFEVELTTLCMIRNQKNEILVQERQKKDWPGWTFPGGHVEKNEGMETAMVRELLEET GLVLKPQLVGVAEWLNDCSGARELATLFIAETADELDELPEETEQPLFWVTEKELREGPL AGSLAELFPVFFGEKQFYFKNNTA >gi|307679278|gb|GL456449.1| GENE 253 247032 - 248810 232 592 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 336 574 6 251 329 94 28 7e-18 MARNTFDVDETLEKEFNWSHYKRLGAYIKPYKKAVFKTLFVIILANLASMLGPYFTKIAI DQVIPQKNLSLLLILGAIFLFSLVIIGWCMRYRIYAITEIGQDILKDMRFSIFEHLQKLP FSYFDSRPHGKILIRVVNYINTLSDLLSNGLINLISDLFNVIITLIFMLFIDVKLTLYSL LLLPVLFVMVLFIQGKQRKAYQELSNKQSNLNAYIHESISGIKITQSFAREDENFQIFNE VSEEYRQSFMKAVRVQYLLWPAVQNISVITTCFIYFVGIRQLGVSVTTGTLIAFIGYINN FWNPVINIGNFYNSLITATAYLERIFETMDVVPEIQDAPHAIELPPIKGTVDFQHVYFRY EEGKNILTDVSFHIEPGQTIALVGPTGAGKTTIINLLSRFYDVNEGAVKIDGYDVRDVTL RSLRKQMGVMLQDTFIFSGTIIENIRYGNLAATEEEVIQAAKIVRAHDFIKDLKDGYETV VEERGSTLSAGQRQLISFARALLADPKILILDEATSSIDTKTEELLQEGLQQLLKGRTSF IIAHRLSTIKNSDKIFYIDGGRIVEEGSHDQLMAKHALYHHLYQSQYDLLKS >gi|307679278|gb|GL456449.1| GENE 254 248803 - 250551 225 582 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 295 557 247 507 563 91 27 4e-17 MNSFEWIWQYAKKNKNKLLLAVIFVVINAILIVIIPLLSGRIVDQVINQGKIEELVPILG IMIGVTVIRTVVRYSYQVLFESVGQSALFDLRKDMYIKLQELDFDFFNHTRVGDIMARMT GDTDAIRHFVSWVTYNLLECILWFIAAVIVMGTINWQLMLALILITPLIFLLTQKMSKES HPVFFEIRESFSRLNSMVEENIGGNRVVKAFSQEPYEIEKFNKHNEDYKKWNMASADVSK KYLPWLDGFAGSLNVIALVLGGLFVIQGRMTIGDLVAFNGFLWMLNMPMRMSGWLINDVQ RFTASSIKIRQLLATKPKIPIAREKEAEPIQGYVTFDHVSFHFSDDPEPPILSDVSFSAK PGETIGILGETGSGKTTLVNLIARFYDPTKGTVYIDGKDAKSYSVRKLRENISMVMQDVF LFSNTIEDNIAFGNTLANLEQVQMMAEIADAHSFISRMPEGYATIVGERGVGLSGGQKQR ISLARALTKDPAILILDDTTSAVDMETESKIQKELGRLTEKKTTFIIAHRISSVREANLI LMMEKGRVVESGTHSELVEQKGKYFDVYQKQLGLTKEGESRG >gi|307679278|gb|GL456449.1| GENE 255 250688 - 251506 885 272 aa, chain + ## HITS:1 COG:lin0157 KEGG:ns NR:ns ## COG: lin0157 COG2207 # Protein_GI_number: 16799234 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Listeria innocua # 5 271 5 271 277 221 43.0 2e-57 MNYTNSRTFNPEILYAFDPWNEETHPYNCHHHEFLEISILLEGESEYIVQGQQYHATAGT VFLFNPRTEHGEQQKAGTYSHQLHIGISNLYLEGLARNVFPNKSALLDLSHLHGAFLEKA WQIVHELNHQEVESALQIKALVIELLVYILRSLAVDQENKIETRLSKTEKRKRNLVNHTI YYLETHHDEEITLEQLAEMLYVTPTYLSKTFKAATGVGPINYLIQIRLNHAKELLKNDSL SVKEVAKTVGYEDAYHFSKLFKKYYGKSPSQF >gi|307679278|gb|GL456449.1| GENE 256 251561 - 252088 576 175 aa, chain - ## HITS:1 COG:BS_paiA KEGG:ns NR:ns ## COG: BS_paiA COG0454 # Protein_GI_number: 16080268 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 1 171 1 171 172 154 45.0 9e-38 MSVFIRECTVADVPELEAICQETFADTYGDGENEEDLQAHYERKFSPAVLESEILHKDSQ YFFAFYNNELAGYVKLNHGDAQITYQHPQALQVERIYIRKSFKRLGLGKHLITKAIELAE EAEKETVWLGVWEHNHPAQKFYQSLGFVKTDEHDFYMGNERHTDYTMTKQLKEST >gi|307679278|gb|GL456449.1| GENE 257 252446 - 253054 642 202 aa, chain + ## HITS:1 COG:L167097 KEGG:ns NR:ns ## COG: L167097 COG1051 # Protein_GI_number: 15672146 # Func_class: F Nucleotide transport and metabolism # Function: ADP-ribose pyrophosphatase # Organism: Lactococcus lactis # 1 192 1 188 200 139 44.0 3e-33 MDYLNTYKRLLALADAGLFYGKDAFDQERYQELRELTLQLISATGHEATVLPDLEKILTK EEGYPTPKVDVRGLIKKENRFLLVEDLRTKEWSLPGGYAEIGCSPKENIEKEVLEETGLV VTAKELLAVYDTDKRKDIPQLFQYYKMIFSCEILENHPFEKNIETSNCAYFSLDNLPPLS IKRTTKEQLMALMNQTTGALSD >gi|307679278|gb|GL456449.1| GENE 258 253105 - 254445 1766 446 aa, chain - ## HITS:1 COG:SPy1150 KEGG:ns NR:ns ## COG: SPy1150 COG0446 # Protein_GI_number: 15675127 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Streptococcus pyogenes M1 GAS # 2 442 3 454 456 367 43.0 1e-101 MKVVVVGCTHAGTSAVKSILANHPEAEVTVYERNDNISFLSCGIALYVGGVVKSAADLFY SNPEELASLGATVKMEHNVEEINVDDKTVTAKNLQTGATETVSYDKLVMTTGSWPIIPPI PGIDAENILLCKNYSQANVIIEKAKDAKRVVVVGGGYIGIELVEAFVESGKQVTLVDGLD RILNKYLDKPFTDVLEKELVDRGVNLALGENVQQFVADEQGKVAKVITPSQEFEADMVIM CVGFRPNTELLKDKVDMLPNGAIEVNEYMQTSNPDIFAAGDSAVVHYNPSQTKNYIPLAT NAVRQGMLVGRNLTEQKLAYRGTQGTSGLYLFGWKIGSTGVTKESAKLNGLDVEATVFED NYRPEFMPTTEKVLMELVYEKGTQRIVGGQLMSKYDITQSANTLSLAVQNKMTVEDLAIS DFFFQPHFDRPWNYLNLLAQAALENM >gi|307679278|gb|GL456449.1| GENE 259 254743 - 255186 578 147 aa, chain - ## HITS:1 COG:lin1791 KEGG:ns NR:ns ## COG: lin1791 COG0735 # Protein_GI_number: 16800859 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Listeria innocua # 1 146 3 148 148 207 63.0 4e-54 MDNVLVKNALAELKEANIRITPQRYAILEYLIENHTHPTADEIYRALEDHFPNMSVATVY NNLRLFTEIGFVQEMSYGDASSRFDFSSKKHYHVICQKCGKIVDFHYPGLEDVEMAASKL TGFEINEHRLELYGLCPDCQQAQQENV >gi|307679278|gb|GL456449.1| GENE 260 255325 - 256257 1052 310 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP6-BS73] # 8 308 6 306 308 409 67 1e-113 MTKGYVKSVTELIGQSPVVKLKRMVPEGAADVFVKLEFFNPGGSVKDRIALSMIQQAEAD GRLKPGQTIIEPTSGNTGIGLAMVGAALGYPVKIVMPDTMSIERRKLMQAYGADLLLTPG AEGMKGAIAKATALAEEHGYFMPLQFNNPANPMVHEQKTGKEIVDVFGKRGLDAFVSGVG TGGTVTGVGHELKRIFPDIEIVAVEPTESPVLEGGEPGPHKIQGIGAGFVPDVLDTTVYQ KVAAVSSEDALETARLMGPKEGILVGISAGAAIKAAIDLAVELGAGKRVLALVPDNGERY LSTALYEFPE >gi|307679278|gb|GL456449.1| GENE 261 256486 - 257346 1110 286 aa, chain - ## HITS:1 COG:lin2838_1 KEGG:ns NR:ns ## COG: lin2838_1 COG1705 # Protein_GI_number: 16801898 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Listeria innocua # 52 205 154 308 340 147 60.0 2e-35 MSEQLTRSSKHIQKALKKQKAYKRATAVAGTSMILAPVVGAAVPAQAESSQQAFINEIGN SAAAVANSNDMYASVMIAQALLESSYGSSGLASAPNYNLFGVKGSYNGQSVYMPTKEYLD GQWVTVTAAFRSYNSYAESFQDHANVIRSTAFGDTYHYSGVWKSNTSSYRDATAALAGSY ATDPGYAEKLNWLIEAYNLTQYDWGAPVAQTTSYSDTTGTVDTTIDTAASATATAETVAS QSYTVANGDTLWDIAARFGTTVDNLMSLNGLTLDSVLSVGQTIQIG >gi|307679278|gb|GL456449.1| GENE 262 257701 - 258891 1078 396 aa, chain + ## HITS:1 COG:CAC0560 KEGG:ns NR:ns ## COG: CAC0560 COG0477 # Protein_GI_number: 15893850 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Clostridium acetobutylicum # 3 394 43 430 441 285 42.0 1e-76 MKKQQSGLTNQVTFLLALTCGVVVANMYYIQPIGTQIAQAFQVSIGSIGFVTMLTQLGYA LGLLFLVPLGDVVDRRKLIIRVAALSSLSLSAAFFAPSFLLFALSSFFIGLLSIVAQIII PYAAVMAGPANRGKVTGRMLGGLLTGILLSRTISGFIASAASWRTVYLIAVIFVLALVVL LQLKLPKTVIHTQTSNRLTYLGSLKSLPKLIKSQPLLREATVNGFFMFATFSIFWSTLIF FVSSPAYYWGPKEVGILAIFGLSGAFVAPIIGRLSDYYPERKIVLIGLLMQFGSFILLFL GGTHVVLLILAIIVLDIGTQFGQVANQTRVQNLGEEASNRNNTVFMFFYFIGGSLGSLIG TLMWQNYGWSGVTLTGIGFQLFALFFHFMLFAPKKK >gi|307679278|gb|GL456449.1| GENE 263 258943 - 260937 2616 664 aa, chain - ## HITS:1 COG:SPy1676 KEGG:ns NR:ns ## COG: SPy1676 COG0021 # Protein_GI_number: 15675539 # Func_class: G Carbohydrate transport and metabolism # Function: Transketolase # Organism: Streptococcus pyogenes M1 GAS # 2 664 53 711 711 927 70.0 0 MFDKTDQLGVNTIRTLSIEAVQKANSGHPGLPMGAAPMAYALWTKHLKVNPTTSRNWVDR DRFVLSAGHGSAMLYSLLHLSGYNVTIDDLKNFRQWDSKTPGHPEVHHTDGVEATTGPLG QGIAMAVGMAMAEAHLAATYNRDSFPIMDHYTYAICGDGDLMEGVSQEASSMAGHMKLGK LIVLYDSNDISLDGPTSKAFTENVGARYEAYGWQHILVKDGNDLDEIEAAIEAAKAETDK PTLIEVKTVIGYGAPKEGTSSVHGAPIGEEGITAAKAVYGWEYPDFTVPEEVAARFKETM IDEGQKAEAAWNEMFKNYEHAHPELAKQFKEAFANQLPEGWEQELPKYELGTSAASRVTS KETIQAISKVVPSFWGGSADLSASNNTMVAAEKDFEPGQYEGRNIWFGVREFAMAAAMNG IQLHGGSHVYGGTFFVFTDYLRPAIRLAALQKVPVTYVLTHDSVAVGEDGPTHEPIEQLA SVRCIPNVHVIRPADGNETVAAWKIAMTSTETPTILVLSRQNLPVLEGTLEHASDSVQKG AYVLSPQKGEQPAGILIATGSEVNLAVEAQAKLAEEGIDVSVVSMPSFDLFEKQSAEYKE SVLPKAVTKRVAIEAAASFGWERYVGTEGKTITIDHFGASAPGGLVLEKFGFTPENVVNT YKSL >gi|307679278|gb|GL456449.1| GENE 264 261009 - 261251 404 80 aa, chain - ## HITS:1 COG:SP1473 KEGG:ns NR:ns ## COG: SP1473 COG4224 # Protein_GI_number: 15901323 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 2 79 1 78 85 77 65.0 5e-15 MLSKEKIARINELANKAKVEELSAKEKVEQQELRKEYLEAFRGGMRHHIEGMKVVDQEGT DVTPEKLKQIQREKGLHNRK >gi|307679278|gb|GL456449.1| GENE 265 261402 - 262022 714 206 aa, chain + ## HITS:1 COG:lin1340 KEGG:ns NR:ns ## COG: lin1340 COG1974 # Protein_GI_number: 16800408 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Listeria innocua # 4 204 2 202 204 246 62.0 3e-65 MAKRTETRQLEVLKYIYEQVELKGYPPTVREIGKAVDLSSTSTVHGHLARLEKKGLILRD PTKPRAIELTPEGLEKIGIQPTTIPMLGVVTAGEPILAVEEASDFFPLPPDLRTEENALF MLTIRGESMINAGILDGDQVIVRKQSNANNGDIVIAMTDEDEATCKRFFREVDHIRLQPE NDALAPILLDNVTILGKVVGLYRNHI >gi|307679278|gb|GL456449.1| GENE 266 262036 - 263205 1172 389 aa, chain - ## HITS:1 COG:lin0933 KEGG:ns NR:ns ## COG: lin0933 COG1600 # Protein_GI_number: 16800004 # Func_class: C Energy production and conversion # Function: Uncharacterized Fe-S protein # Organism: Listeria innocua # 4 371 13 374 380 401 53.0 1e-111 MPTLKEKIIQESQRLGIDKIGFTHAEPFIELEDSLHEQRERGYNSGFEHQNVEERIYPEK TFEHPKSIISIALAYPTKAQEKMPRDEKRGQFARASWGIDYHHILQDRLQKLIAFIEEQA ATEAEKEHWRFRPQVDTGEYIDTAVAQRAGLGFIGKNGLLITEEFGSFVYLGEVTTNIQF EPDEPVPNGCGDCTRCITGCPTGALLGDGRMNAQKCLSYQTQTKGMMPEEYRKKMRNVIY GCDICQLVCPYNKGKDFHFHEEMEPKIEEVYPKLAPLLTISNKEFKQQFGHLAGSWRGKK PLQRNALIALANLGGREAIPQIILCLNDQRPVIRGTAAWSLGQLAKREPEQSLEALNYLL SVETEEEVIEEAQKAIHLLTSKKGSRSTE >gi|307679278|gb|GL456449.1| GENE 267 263229 - 263723 604 164 aa, chain - ## HITS:1 COG:BH3450 KEGG:ns NR:ns ## COG: BH3450 COG0262 # Protein_GI_number: 15616012 # Func_class: H Coenzyme transport and metabolism # Function: Dihydrofolate reductase # Organism: Bacillus halodurans # 1 164 1 162 163 147 45.0 7e-36 MLAAIWAQDEQGVIGKEGKLPWHLPNDLKFFKEKTIHNTLVLGRATFEGMGCRPLPNRTT IVLTSNPDYRAEGVLVMHSVEEILAYADNYEGVTVIGGGSVVFKELIPACDVLYRTMIHE TFEGDTFFPEIDWSVWEKVATVPGVVDEKNLYAHDYETYHRNDK >gi|307679278|gb|GL456449.1| GENE 268 263741 - 264688 1101 315 aa, chain - ## HITS:1 COG:lin1988 KEGG:ns NR:ns ## COG: lin1988 COG0207 # Protein_GI_number: 16801054 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate synthase # Organism: Listeria innocua # 5 315 4 314 314 478 71.0 1e-135 MEEAYLALGKKILEEGHFKEDRTGTGTYSLFGYQMRFDLAKGFPLLTTKRVPFGLIKSEL LWFLKGDTNIRYLLERNNHIWDEWAFERYVKSADYQGPDMTDFGHRVLQDPAFAEQYKEE HQKFCDTILNDAEFAEKYGELGNIYGAQWRHWETKDGSFIDQLANVIEMIKTNPDSRRLI VSAWNPEDVPSMALPPCHTMFQFYVNEGKLSCQLYQRSADVFLGVPFNIASYALLTHLIA HETGLEVGEFVHTLGDAHLYQNHVEQMQEQLSREVRSFPTLVLNPDKASVFDFDMEDIKV EGYDPHPTIKAPIAV >gi|307679278|gb|GL456449.1| GENE 269 264706 - 266595 2106 629 aa, chain - ## HITS:1 COG:lin1989 KEGG:ns NR:ns ## COG: lin1989 COG0488 # Protein_GI_number: 16801055 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Listeria innocua # 1 629 1 630 630 638 54.0 0 MKELKVTDLTKTYGEKTLFDHLSFLIHEKDRIGLIGINGTGKTSLLNIIAGVDSGDGDLA AIQQPSDYQIGYLSQNQTFDENITIAEAVFQGDSPIIKAVKNYELALAALSENGLDEGVQ RRYTQAEEAMNKQDAWTADTNAKIILQKLGIPTLEKKIGELSGGQLKRVSLAQVLIEAPD LLLLDEPTNHLDYETIEWLENFLNNYRGAVLMVTHDRYFLDRVTNRIFELSFGKLYEYKG NYETYVMEKAERERVAVEQEEKRKRLFKQELAWMRAGVQARGTKQQARIDRFQDLKENLH QVQTNGTLEADFATQRLGKKVLEIKEGNYAIDHKQLLKDFNLLIQANDRIGITGKNGAGK STLLNILAGRIPLESGLYSIGETVRIGYYTQQNEEMDPNQRMIAYLQEAAEEVKCSDGSS VGVAEMLERFLFPRFMHGTLIGKLSGGEKRRLYLLKLLISQPNVLLLDEPTNDLDIDTLT ILEDYIQMFKGAVIAVSHDRYFLDKTMDKLLVFQGNGQILSFYGTMSEYLANQKEQEKVK EKPLNKPVKEASTEKKEKTKLTYMEQKEWATIEEDITQLETKLETLTEEMNHQGDDFVRL QELQEAVTATEQLLEEKMNRWEYLSEYAD >gi|307679278|gb|GL456449.1| GENE 270 266559 - 266654 67 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFWLNLLLLILSPTLPTPSILVLLIVSKIGL >gi|307679278|gb|GL456449.1| GENE 271 266706 - 268760 2371 684 aa, chain - ## HITS:1 COG:L187315 KEGG:ns NR:ns ## COG: L187315 COG0025 # Protein_GI_number: 15672365 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters # Organism: Lactococcus lactis # 1 666 2 662 680 437 39.0 1e-122 MEFTFLIIVFALSITFSNIFNRIVPVIPLPIVQIIVGVLIGLTKMGQEIEFEPEVFLVMI IAPLLFREGELINLKAMMKNFGMILFLAFFGVLITLVGVGWTLHMILPTLPLAACFAFGA ALGPTDAVAVGSLSGRIDIPERSMNILSGEGLINDASGVTAFQFALAALLTGSFSPVEAA GTLVISSIGGAVVGIVLVLLKQQIVHLLETAVAKDVTGYLLIELLLPFIAYLISELIGVS GIIAAVIAGIMQASSLKKVSLFEAELSNVGESIWSMIEFTLNALVFLFLGIELSQVFSPI WIDQQYSNWFLLMVVLIISAVVFLIRFLAIFSVYTLQHGLKKVKNAMNEMLILTFGGVKG TVSLATIFILPTAINGEHFKERPLLLFITACVILVTLIGGILVLPFLTDSETEVENEESV EIDLLRDVIDVLKQQNEENPRGEMNAVIENYQDRLKELYTEQLSAERKQEVQELRTLIVS IERDGLEESLKQGEISVRSYRMYQRLITRMQRSIAKQLLSIVGFWLLFARQIISILLHPK LFFNRGEASEEEKELRNEELENIRQVFLRNSQVILKSLDNLRGVYDDDLIDFFIDGRLDL AHKFEKGEFIDSYIVHTETDYVKDLLLGFQEERRMIDHYEQSERISIIEANELRKNVNLL ESYSISGEVNNVPLKRFVKNFNKE >gi|307679278|gb|GL456449.1| GENE 272 268796 - 269062 319 88 aa, chain - ## HITS:1 COG:no KEGG:EF1573 NR:ns ## KEGG: EF1573 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 88 23 110 110 97 98.0 2e-19 MSEEFEKCVADLKKKYQAIPEEKRQHFAERMQKKNFLRYKKIELIKGELLRLEARRAQLE LCERSSELEEVEKKIILKKKKLLKCFDR >gi|307679278|gb|GL456449.1| GENE 273 269206 - 269682 381 158 aa, chain - ## HITS:1 COG:no KEGG:EF1572 NR:ns ## KEGG: EF1572 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 158 1 158 158 284 99.0 9e-76 MIIDGFTLLLFLFVVVMYGYFYFVRKSIVIPAAKHPTTKYLVAFFSLMILANAFSAGDKI EMIRSVLYILIIFSFLYDARGFAEDCIITHPFDNRGTAFKDIEKIVLVQKSNGIRLGYLK KGRRGVVLRFSAPLEEMVLFLSTRMNEEAEIDIIVNED >gi|307679278|gb|GL456449.1| GENE 274 269694 - 269888 258 64 aa, chain - ## HITS:1 COG:no KEGG:EF1571 NR:ns ## KEGG: EF1571 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 64 1 64 64 72 100.0 7e-12 MKRNIALLQSEKMKKVQALANYYQESIDLPPGKNREAVIKKINESKKEIKEINDILTDIQ KKKK >gi|307679278|gb|GL456449.1| GENE 275 270082 - 270930 950 282 aa, chain - ## HITS:1 COG:lin2658 KEGG:ns NR:ns ## COG: lin2658 COG1307 # Protein_GI_number: 16801719 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 2 280 4 281 283 239 45.0 5e-63 MKIAIVTDSTAYLPERIKDHPNLFVIPIPVILDGKIYNEGIDIEADEYYALLNNSKEFPT TSQPALGEVLELYKSIAEQGYDTIISIHLSSGISGFVHTLHGLTDEIPGVALYPYDSKIT SMPMGHMVEAALDLTEEKASLEEIFAKLDLIRDNTYAYLIVEDLNNLVRGGRLTNGAALI AGLLKIKPILTFEDGKIVLFEKIRSTKKAFARAEKIIGERNAGIEAPVKLYVIHANNRIV AEKEQAKLQKLYPNAEIEIGHFGPVIGTHLGEKAIGLAISAQ >gi|307679278|gb|GL456449.1| GENE 276 271006 - 272178 1228 390 aa, chain - ## HITS:1 COG:lin0463 KEGG:ns NR:ns ## COG: lin0463 COG1316 # Protein_GI_number: 16799539 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 88 388 6 308 309 260 45.0 3e-69 MSRVDRYKHIHEKSRPAEHKKTFNPRKSMGEHREEEPEELAESLQEPVYEDSYTEDSRRS ERRHQTDSGGGNGSDQPPRGKKDKKPKKKRKKSKTKRFFKWLVILLILLFAYSTVMFLKG KSAAEHDDSLPQEKVETFNGVKSSNGAKNILILGSDTRGEDAGRADTIMVLQLNGPSKKP KLISFMRDTFVDIPGVGPNKINAAYAYGGAELVRETLKQNFNLDTKYYAKVDFQSFEKIV DSMFPKGVKIDAEKSLNLDGVDIEKGQQVMDGHVLLQYARFRMDEEGDFGRVRRQQQVMS AVMSQMKNPMTLLRTPESLGKLVGYMSTDVPVSFMLTNGPSLLIKGKTGVESLSVPVPDS WNFGESSYAGSILEVDEQKNADAIEKFLNE >gi|307679278|gb|GL456449.1| GENE 277 272322 - 273170 888 282 aa, chain - ## HITS:1 COG:SP1369 KEGG:ns NR:ns ## COG: SP1369 COG0077 # Protein_GI_number: 15901223 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydratase # Organism: Streptococcus pneumoniae TIGR4 # 1 280 1 275 282 276 51.0 3e-74 MKVGYLGPIGSFTYSATLAAFPDATLIPYASIPACLKAIEQQEVTCSIIPIENTIEGTVN ASIDYLYHQAQLPVQAELVLPIQQQLMVAKENQSIWQQSQKILSHPQALAQSQMFLAKNF PEAILESTPSTAYAAKYIAEHPELPFAAIAPKLSAEMYDLTIVEKNIQDLSVNQTRFWVL GSENLAISFPLSEKKITLAITMPSNVPGSLHKALSVFSWRGINLSKIESRPLKTKLGEYF FLMDLVNDQPEKLIEAALTELELIGAEIKILGDYPIYVLSTL >gi|307679278|gb|GL456449.1| GENE 278 273178 - 273684 549 168 aa, chain - ## HITS:1 COG:SP1370 KEGG:ns NR:ns ## COG: SP1370 COG0703 # Protein_GI_number: 15901224 # Func_class: E Amino acid transport and metabolism # Function: Shikimate kinase # Organism: Streptococcus pneumoniae TIGR4 # 5 162 4 157 158 132 44.0 2e-31 MESIVLIGFMGAGKTTIGQSLANKLKMPHLDLDTALIEKIGRSIPDYFEKYGEAAFREQE TQLLKELSKNTAVLSTGGGIVVGPENRSLLKSFQQVIYLHATPEELLKRIAEDTENQRPL AIERSSKEIITLFESRKNFYEECAKMTIDTTNRSPEEIINEILQQLKE >gi|307679278|gb|GL456449.1| GENE 279 273704 - 274984 1446 426 aa, chain - ## HITS:1 COG:SP1371 KEGG:ns NR:ns ## COG: SP1371 COG0128 # Protein_GI_number: 15901225 # Func_class: E Amino acid transport and metabolism # Function: 5-enolpyruvylshikimate-3-phosphate synthase # Organism: Streptococcus pneumoniae TIGR4 # 1 424 1 424 427 528 62.0 1e-149 MQLRTNVKHLQGTLMVPSDKSISHRSIMFGAISSGKTTITNFLRGEDCLSTLAAFRSLGV NIEDDGTTITVEGQGFAGLKKARNTIDVGNSGTTIRLMLGILAGCPFETRLAGDASISKR PMNRVMLPLNQMGAECQGVQQTEFPPISIRGTQNLQPIDYTMPVASAQVKSAILFAALQA KGTSVVVEKEKTRDHTEEMIRQFGGTLEVDGKKIMLTGPQQLTGQNVVVPGDISSAAFFL VAGLVVPDSEILLKNVGLNQTRTGILDVIKNMGGSVTILNEDEANHSGDLLVKTSQLTAT EIGGAIIPRLIDELPIIALLATQATGTTIIRDAEELKVKETNRIDAVAKELTILGADITP TDDGLIIHGPTSLHGGRVTSYGDHRIGMMLQIAALLVKEGTVELDKAEAVSVSYPAFFDD LERLSC >gi|307679278|gb|GL456449.1| GENE 280 274997 - 276091 1077 364 aa, chain - ## HITS:1 COG:lin2038 KEGG:ns NR:ns ## COG: lin2038 COG0287 # Protein_GI_number: 16801104 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydrogenase # Organism: Listeria innocua # 1 362 1 365 367 377 52.0 1e-104 MKKRILIVGLGLIGSSLALCIKKGHPNSEIIGFDNQAEATEFAKKTGLIDEIAESLTSGA RRAEIIFLCSPVKATLVQLEELNQLSLETALITDVGSTKVEINQLATKLNMKNFIGGHPM AGSHKSGVTAADERLFENAYYIFTDDHGEKNKQIQELQTLLKGTHAKFITMPAQEHDEIT GALSHLPHIVAAALVNESQQLNTTYPRAQQLAAGGFRDITRIASSDATMWTDILLSNRLV LLDLLENWQKEMTTVCQWLTEKNAPAIRNFFDKAKETRAQLPIHKEGAIPAFYDLFVDVP DQPGIIAEITQILGEADLSLTNIKILETREEIYGILQLSFKNQPDCQAAKQILSKKTNYT CYEK >gi|307679278|gb|GL456449.1| GENE 281 276125 - 277291 1524 388 aa, chain - ## HITS:1 COG:SPy0810 KEGG:ns NR:ns ## COG: SPy0810 COG0082 # Protein_GI_number: 15674852 # Func_class: E Amino acid transport and metabolism # Function: Chorismate synthase # Organism: Streptococcus pyogenes M1 GAS # 1 388 1 388 388 497 62.0 1e-140 MRFITAGESHGPELTAIIEGLPAGLPLSSEEINRELARRQGGYGRGGRMKIEKDQVRITS GIRHGKTLGSPVTLIVENKDWKNWTSVMSVEPVPEKQKKIRRVSKPRPGHADLVGGMKYQ HDDLRNVLERSSARETTMRVAIGAVAKKLLAELDIQVAGHVAVLGGIEATIPENLTIREI QERSEQSAVRVLDPSVEEKMKELIDQTKKNGDTIGGVVEVLVGGVPAGLGSYVQWDRKLD AKIAQAVVSINAFKGAEFGIGFEMAQRPGSQVMDEIVWDESTGYTRTSNNLGGFEGGMTN GMPIIVRGVMKPIPTLYKPLQSVNIDTKEPYKASVERSDSTAVPAASVVCEAVVATEVAK AMLEKFDSDSFEQMKEAVKRYRLYTQNF >gi|307679278|gb|GL456449.1| GENE 282 277293 - 278369 1307 358 aa, chain - ## HITS:1 COG:L0060 KEGG:ns NR:ns ## COG: L0060 COG0337 # Protein_GI_number: 15673738 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate synthetase # Organism: Lactococcus lactis # 1 354 1 356 356 400 56.0 1e-111 MKLTVTLPTHSYDLTIETGALDKIGTWVRSLWQPQRVAIITDETVNKLYGVAVEKELQAA GFETSLIAVAAGEQSKSLETAQLLYDFLAEQQLTRSDGLIALGGGVVGDLAGFVASTYMR GIHFLQVPTTLLAQVDSSIGGKTAVNTKKAKNLVGTFAQPDGVLIDPNTLKTLEPRRVRE GIAEIVKSAAIADVELWHRLSSLENEQDLVAHAEEIITACCKIKRDVVEEDELDLGLRLI LNFGHTIGHALENTAGYGVIAHGEGVSLGMIQITQVAEQRGLSPLGTTQELVTMLEKFDL PVTTDRWPEERLYQAITHDKKTRGGQIKIIVLEKIGQAKIVSLPTEEIRAFLNREGGI >gi|307679278|gb|GL456449.1| GENE 283 278392 - 279417 1265 341 aa, chain - ## HITS:1 COG:TM0343 KEGG:ns NR:ns ## COG: TM0343 COG2876 # Protein_GI_number: 15643111 # Func_class: E Amino acid transport and metabolism # Function: 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase # Organism: Thermotoga maritima # 1 333 1 333 338 344 51.0 1e-94 MIVIMKENATEKQMKQVIDLVTGAGLTTQTSQDNGKTVIGLIGDTEKLVEAELTALEGVE KSVRISLSYKLTSRLFHPENTVVDVNGVKIGDGSMTMMAGPCSIESLDQIRECARIAKAG GATILRGGAFKPRTSPYAFQGLEEEGLKYIRQAADELDMQVITEVMDEANLELVAKYSDI LQIGARNMQNFKLLQAVGKTGKPIGLKRGIAGTIDEWLNAAEYIAAQGNFNVIFIERGIR TYETATRNTLDLSAVPLIKKLSHFPIIVDPSHGVGIWDLVPPMARAGVASGADGLIVEIH PDPANAWSDGPQSLNEKTYLRMMKEVHIIEKAMKEINALED >gi|307679278|gb|GL456449.1| GENE 284 279454 - 280320 785 288 aa, chain - ## HITS:1 COG:lin0493 KEGG:ns NR:ns ## COG: lin0493 COG0169 # Protein_GI_number: 16799568 # Func_class: E Amino acid transport and metabolism # Function: Shikimate 5-dehydrogenase # Organism: Listeria innocua # 2 282 7 287 291 276 48.0 2e-74 MKEITGATRLAGLFAKPSQHSISPLIHNTAFQNLGVDARYLAFDVGQETLPQAIEAIRTF HMLGANLSMPNKVASVSYMDELSPTAQLVGAINTIVNKDGKLYGDSTDGTGFMWSLKEKK VDVFQNKMTILGTGGAALSIIAQAALDGVKEIAVYNRKSAGFNDSQKKLANFTERTNCVI HLNDLADTEKLAKDVAESVLLVNATSVGMHPHAHSSPIENYAMIQPKLFVYDAIYNPRET QLLKEARLRGAETSNGLDMLLYQGAAAFEQWTGQKMPVSVVKRKIENR >gi|307679278|gb|GL456449.1| GENE 285 280809 - 281264 581 151 aa, chain - ## HITS:1 COG:no KEGG:EF1560 NR:ns ## KEGG: EF1560 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 151 1 151 151 301 100.0 7e-81 MAREMTGLKFYFRNGETWTIDRRFIGDLWIKHITTSFGRIHGSEFVEIHPCEGFKIEIFQ EGDHVQTHDINLGGLELGMFSRALKYEDIERMEILYKNGTPDLVYFPYKDKTDEGLDNIY QSTKVSEKTKNLYIVIDPTQTVDDVYAEELK >gi|307679278|gb|GL456449.1| GENE 286 281354 - 281728 486 124 aa, chain - ## HITS:1 COG:SPy1339 KEGG:ns NR:ns ## COG: SPy1339 COG5496 # Protein_GI_number: 15675277 # Func_class: R General function prediction only # Function: Predicted thioesterase # Organism: Streptococcus pyogenes M1 GAS # 5 123 3 121 121 70 30.0 1e-12 MPTEMFTKEFLVKESQTAKMLGSGDLEVLGTPALAAMIEQTAKEAVKDQLSVGETTVGTV LELRHLFPSAVGATIVVTMTSIEQTAHKIRYEFVAYEGERQIAKGSHQRAVVEIDSFLKR ITKD >gi|307679278|gb|GL456449.1| GENE 287 281728 - 283002 1316 424 aa, chain - ## HITS:1 COG:SP1554 KEGG:ns NR:ns ## COG: SP1554 COG0617 # Protein_GI_number: 15901397 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Streptococcus pneumoniae TIGR4 # 24 418 1 394 394 351 49.0 1e-96 MSASGTENRTTLRIGTDAMKLTTIPNEFKEAAPVIREINAQGFEAYFVGGSVRDALLNKP IHDVDIATSAYPEEIKQIFKRTVDVGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDE VTFVRSLKEDLKRRDFTINALALDSTGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALR MMRGLRFASQLDFKIEEKTLAAIAEFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIE TECYQYCPKLREQGAGLFRLMDLPARQIETEAEAWTLLIQSLNLPEAEIRSFLKAWKLSN QLIQNVSQLVRGLRFRLSNDWQPMMLYELGEESAVLVERLLYYYQQESQVQVTKELVKAL PIHQRHELTITGKDLLAVLEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKKQRSK GEKA >gi|307679278|gb|GL456449.1| GENE 288 282945 - 283724 935 259 aa, chain - ## HITS:1 COG:SP1555 KEGG:ns NR:ns ## COG: SP1555 COG0289 # Protein_GI_number: 15901398 # Func_class: E Amino acid transport and metabolism # Function: Dihydrodipicolinate reductase # Organism: Streptococcus pneumoniae TIGR4 # 2 259 3 255 255 327 63.0 1e-89 MIKIIVAGFKGRMGSTATQMVLETADFELVGVYDPHEAQETVSFNDETAIPVFQRLEEVL AVKPDVWIDFTVPEAAYPNTRFALEHGMAPVVGTTGFTEEQINELTNLSREKAIGGLIAP NFAIGAVLMMQFAQKAAQYFPDVEIIELHHDNKLDAPSGTAIKTAEMIQEVRPAKKQGNP QEVESIPGARGADFEGLRIHSVRLPGLVAHQQVQFGSVGEGLTIRHDSYDRRSFMTGVAL ACRQVVQRTELLYGLEQML >gi|307679278|gb|GL456449.1| GENE 289 283717 - 284067 444 116 aa, chain - ## HITS:1 COG:SA1292 KEGG:ns NR:ns ## COG: SA1292 COG1694 # Protein_GI_number: 15927040 # Func_class: R General function prediction only # Function: Predicted pyrophosphatase # Organism: Staphylococcus aureus N315 # 7 110 2 105 105 121 65.0 3e-28 MSESEQRSLQSMQTEVDDYIQQFKTGYFSPLGQMARLTEEVGELAREVNHYYGEKQKKAD EKPKTVSEELGDVFFVLISMANSLEIDLTEVFEENMAKFNKRDRYRFERKDGKTHD >gi|307679278|gb|GL456449.1| GENE 290 284191 - 285075 1009 294 aa, chain + ## HITS:1 COG:SPy2153 KEGG:ns NR:ns ## COG: SPy2153 COG1284 # Protein_GI_number: 15675895 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pyogenes M1 GAS # 14 279 16 281 290 282 52.0 4e-76 MEEQRFYFKDVLFIVLGSCIYAFGLVTFNIANDLAEGGVTGITLILRALFHFNPAYTTLL INIPLLLIGGKILGKRSLYYTLIGTVSLSVFLWFWQKFPVEINLDHDLLIAALLAGLAAG FGSGLVYRVGGTTGGTDVIARIFEKYFGISMGRSLLLFDVAVLLLSLTYIDVKRMMYTLI VSFVFSRVVDSVLDGAYAAKGILIVSNHSEEIGQSLMASLERGVTYLNGEGAYSQVEKRV LYTVVSPREIMEVKRIANEIDEKAFVSIINVHEAIGEGFTYAKPSKQRRFKLKQ >gi|307679278|gb|GL456449.1| GENE 291 285113 - 285652 655 179 aa, chain - ## HITS:1 COG:lin2035 KEGG:ns NR:ns ## COG: lin2035 COG5582 # Protein_GI_number: 16801101 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 3 179 5 179 181 119 39.0 3e-27 MFVSLSEKKKFLTWLVNTVPFGRREVLWILNYLLTHDAILNNVHFVENVEKTDRGIRVVA DGLGKEPLLLFIQAQEFTDPEQIFHEIRMNWRKALYLECVFPEAWQTSQYLSVLEDNPFA PWNEQVDQEVARAIDQYFKQEEQTQRMALLKAQIDDALETGNKEAFLELSDELNRLKQQ >gi|307679278|gb|GL456449.1| GENE 292 285662 - 286918 1604 418 aa, chain - ## HITS:1 COG:SPy1012 KEGG:ns NR:ns ## COG: SPy1012 COG0457 # Protein_GI_number: 15675015 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Streptococcus pyogenes M1 GAS # 1 412 1 406 415 241 40.0 2e-63 MSYSEKMVQALQAENLAEAQLMFEEALKKDDENTLADLGETLLSLGFLEEAKQIFQQLLE QFPDADGLNIPLAEIAIENNEIDDAFIYLEKIPETSDSYVQSLLVTADLYQVLGIPEVSE AKLKEAANLMPEEPLIQFALGELYFTNGQFVEAITRYQSIVESGTAQISAISLNERLGSS YSMLGDFEEAVPYLEAAVKEEQTDDRLFQLAFTYLQLHENQKAITLFQQLKTLNPHYQSL YLYLAEALQEEEQLEEAKAVIEEGIAENPFQVELYQFASENAYRLHDIAGAENWLLKALE LGEKTDESRLTLSNLYLTEERFEEVITILNDLEETDHPYAEWNLAKAYNELEDFAVAKVH YEQVAQELSHEPEFLKEYALFLREEGELEKAKHLLYHYLEHEPGDVDMQSVLADMEER >gi|307679278|gb|GL456449.1| GENE 293 286928 - 287968 851 346 aa, chain - ## HITS:1 COG:no KEGG:EF1552 NR:ns ## KEGG: EF1552 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 346 1 346 346 684 98.0 0 MKYNYSRGENKVAIIYGETFASVLKKRPVTTESIVVLANQRYYDLFSEKINYAFGEQLGL NWYICRNDVHCNDLSELESVLRFLADWPENQDVLLIGLGNEGVLQLTAFLHQVSKCSSKC WLMPVSVQALRQGLLPSVTIQQAQHATMHIENHSEEILFDSTLTNKKGAAPLIDLLVFIR AGLVCDYAYLQMLYQTYPDKKRLNQTSFNGILDELLSFYEQAGEKVDQFGRVFEAAFATT ENGHLLSGPMKRLLGLLLQVLWSQQVNHFDFQFKNFIVWFIRLGFPVAFPKEILSADYAE QVLAHTETLGPPMVLEKIGQLGVALKPTPDQLLTTIERYQEILKEI >gi|307679278|gb|GL456449.1| GENE 294 288274 - 288549 179 91 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 [Haemophilus influenzae PittEE] # 4 91 6 93 96 73 38 9e-12 MANKAELIENVASSTGLTKKDATAAVDAVFSTIQETLAKGEKVQLIGFGNFEVRERAARK GRNPQTGQEIQIAASKVPAFKPGKALKDAVK >gi|307679278|gb|GL456449.1| GENE 295 288797 - 290107 1826 436 aa, chain - ## HITS:1 COG:SP1709 KEGG:ns NR:ns ## COG: SP1709 COG1160 # Protein_GI_number: 15901543 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pneumoniae TIGR4 # 1 436 1 436 436 691 78.0 0 MANPTIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGG IDLGDEPFMDQIKHQAEIAIDEADVIIFVASGREGITDADELVAKILYRSNKPVILAVNK VDNPEMRNDIYEFYALGLGDPFPVSGSHGLGIGDVLDEAVKHFPNTSEEEDEDTIKFSLI GRPNVGKSSLINAILGEDRVIVSDIEGTTRDAIDTYFESEEGQKFLMIDTAGMRKRGKVY ESTEKYSVMRAMRAIERSDIVLMVLNAEEGIREQDKRVAGYAHEAGRGIIIVVNKWDTVK KDTNTMRDFEAEIRDEFQYLDYAPIIFVSALTKQRLNKLPELIETVSMNQNLRIPSALLN DVVMDAVSINPTPTDKGKRLKIFYATQVAVKPPTFVIFVNEEELMHFSYARFLENQIRKA FTFEGTPIKIIPRRRK >gi|307679278|gb|GL456449.1| GENE 296 290281 - 291492 2025 403 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29376111|ref|NP_815265.1| 30S ribosomal protein S1 [Enterococcus faecalis V583] # 1 403 1 403 403 784 100 0.0 MTDFEDKQVANNETMEDAMNSVQEVSVGDIVKGEVLAIEDKQVVVGIEGAGVEGVVPAKE LSTLPVEDVHELVKVGDVLDLVVITSIGKDKENGSYLLSKRRLDAKKVWEEIEQDFQAGK VIEAPVTNVVKGGLVVDVGVRGFVPASMVEDHFVADFSEYKGQTLAFKIIEIEPSENRLI LSHKAVVEAEKESKKEELLSSLHDGDVVEGKVARLTDFGAFIDLGGVDGLVHVSEIAHQH VGKPSDALTVGEDVQVKILSINPEEGRISLSIKETLPGPWTDIETKAAAGTVLDGTVKRL TSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDQVQVKVLEVNPEEHRIALSIKA LEPKPESQEEPKEEQEYELPEENTGFTMGDILGDALSDAKEEE >gi|307679278|gb|GL456449.1| GENE 297 291606 - 292286 814 226 aa, chain - ## HITS:1 COG:SP1603 KEGG:ns NR:ns ## COG: SP1603 COG0283 # Protein_GI_number: 15901443 # Func_class: F Nucleotide transport and metabolism # Function: Cytidylate kinase # Organism: Streptococcus pneumoniae TIGR4 # 1 215 1 216 223 240 63.0 1e-63 MGKISIAIDGPASSGKSTVAKILAKQLNYVYCDTGAMYRAITYLALQNQIDIQAEEPLVA LCVNHTISFQQAENGQRVFIDGHEVTEAIRQPDVTNAVSAVSKHAKVREEMVALQQKIGQ AGGVVMDGRDIGTAVLPKAEVKIFLVASVEERAERRFKENQEKGIETDFETLKAEIERRD YLDSTREVSPLVQASDAVKIDTTGLTIEEVVAAIQNVIKQKGFELF >gi|307679278|gb|GL456449.1| GENE 298 292523 - 293164 718 213 aa, chain - ## HITS:1 COG:no KEGG:EF1546 NR:ns ## KEGG: EF1546 # Name: not_defined # Def: LysM domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 213 1 208 208 162 92.0 1e-38 MSKKDKKKNQAREPWEQSIYEPDQNGGGSRLAKRQQQRGNSLFLTVLVILLLLIIAIPIG TFLWMMQDKKPNESASKNSQPSSSLVQSSSKEKKKESTSKSVESSEPASSQPAENTTPSS SDAAAQQQQDQQAQQQQQQEQQQQQEAQNQQQEAQNQQQQQAQNQQPVYDTVQSGEGARQ VAERNGMTLEQILALNPGIDTSVFYPGQPLRIK >gi|307679278|gb|GL456449.1| GENE 299 293240 - 294676 1156 478 aa, chain - ## HITS:1 COG:lin2056 KEGG:ns NR:ns ## COG: lin2056 COG0514 # Protein_GI_number: 16801122 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA helicase # Organism: Listeria innocua # 1 468 1 460 467 344 42.0 2e-94 MTLEQELFTRFGYAAFKPGQKEVITNLLDGMNTLAVLPTGTGKSLCYQFVGQKLEGLTVI VSPLLSLMEDQVRQLQRQGIKGAVALNSTLQYSEKRYILAKMFQYDYLFLSPEMLLQQEV LSVLQRQKIALFVVDEAHCVYQWGVDFRPEYSKLDLVQKQLDFPLTLALTATATPVVQHA IIKQLFSHGSYQEVLSSVNRKNIGLFVKETSEKEEVLLDYLSKTAGKIIIYCATRNKTEQ ISQLIQAKTSFKVAYYHGGLEASERSRLQEQFIDNQIDILCATNAFGMGIDKPDVRGVIH FDLPDSLENYLQEIGRAGRDGQKSWALLLYKKGDEFIHRFFLEETRANRATLKSLIEGEE QAGLLENATELQQKWVQGYLAKDYSFEELEHRLEEKEKDRQAQLRGMLTYIETTTCRRTL IQTYFQEPIVKQSPETCCDNCALFFDIYQDSIVKSNKTSNQNEGGWRSKFLKLFKERD >gi|307679278|gb|GL456449.1| GENE 300 294683 - 295717 758 344 aa, chain - ## HITS:1 COG:BH1606 KEGG:ns NR:ns ## COG: BH1606 COG4955 # Protein_GI_number: 15614169 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 21 337 26 347 359 85 25.0 1e-16 MEATFILALLSHGYKVRASTLYHLLKGKRTSSVLIYGFLYDCLRFIGWWPTISEQAFFQF LEKLSKEKQIQYHKETNEIQLTKEGQLFLKEHHFSLLDYPAIDLYRFGRSDRESWQLIQF AVQVTSYLSFEEKQYIPLLSTPIPQLYLKRWLQQDKKEQRVQSIKEELLRGFELLPEAES DYLVAQLSGYQQTGKVPQQLTSHKTVLEQRLWHTQAVHHLLQLIMYGGNYPALQTLVWPY LEKNLNQSMQETQRLLTEGKTLQEIAEQRKIKPSTIHDHLLELAIQGQLQASVYLEKEAI LQNLAQTEQDPRLWVYRDWRAQEATLSYLDFRLYQIQQIWQEKE >gi|307679278|gb|GL456449.1| GENE 301 295753 - 295971 209 72 aa, chain + ## HITS:1 COG:L176167 KEGG:ns NR:ns ## COG: L176167 COG1141 # Protein_GI_number: 15673687 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Lactococcus lactis # 1 70 1 67 67 66 42.0 1e-11 MQSRLVPEKCIACGLCQVYAPNIFDYDDHGIVLFKDEPHARQQFIPENERENVLKAYRKC PTRAIEISKNEC >gi|307679278|gb|GL456449.1| GENE 302 295994 - 297400 1306 468 aa, chain - ## HITS:1 COG:BS_yvbJ KEGG:ns NR:ns ## COG: BS_yvbJ COG4640 # Protein_GI_number: 16080441 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 4 292 4 295 605 104 21.0 5e-22 MKKCKNCRHVNRDTESFCEECGAPLMNESMHQEENQAQPSMNKGNESTPLRSKRSWIWVF LFVFIVLGAGSYFLGTHYFSKEQQISHFIEAIENGDAQELSKKMRTNESEFQVNPQSIKP LITYYQKNPTELKKLEKALLKDKKLHGLTIRETSQTAFFFHRYQFILTPVSVQLTTNQRG VTLAMNGREVGTSDSTTYQKELGPLAPGQYTFTATVKDSTGEPVITEEYRLLEEENYISS IPLDFKRMNFVVESNLPDADIYINDRKVGTLTNGSKTIGPLFWSKGMTIQLKKTINGEEI QTSKETIGENDFVEALSDNPTLQLNFPLAGDYDARKALETFYQAFAKQVKSHTDSTEFAK KYLVGGENNPQFPSFIEALERLREKKSTDVSPDFEVTINTLQLDGKENYHVNYYLEAKNS KAKENGLRYEWINGLNDQIHLVKEPLKEGQLQFVSIDEQTLAWLEKIL >gi|307679278|gb|GL456449.1| GENE 303 297581 - 298246 605 221 aa, chain - ## HITS:1 COG:lin2059 KEGG:ns NR:ns ## COG: lin2059 COG3601 # Protein_GI_number: 16801125 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 22 216 3 192 203 114 34.0 2e-25 MTKKRIKKFVEDGSLIGGFQMNNKVQKMVSIAMLAAIGTVLQFVAFPIMPAFSFLKIDFS DIPILLGMFLYGPLAGVITAFVRSLLHLFLTGLAPQNMVGDFASFLASSIFTLPIFYFFG KKKNIRTNRIMGLVSGILALTIFMSIANYFVITPVYLQLYGVTTQQFLGTSLASYVAIGI VPFNLIKGLLVSGVFLVLHAKLLPWLSKKQHTIQKKTPLTK >gi|307679278|gb|GL456449.1| GENE 304 298591 - 299307 1062 238 aa, chain - ## HITS:1 COG:SP1874 KEGG:ns NR:ns ## COG: SP1874 COG1187 # Protein_GI_number: 15901702 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Streptococcus pneumoniae TIGR4 # 3 237 2 236 240 285 63.0 7e-77 MERLQKAIAHAGVTSRRKAEELIVKGRVKVNGQVVKELGTQVSKQDTVEVDGVPIYQEEY GYYLFYKPRGVISAVSDDKGRKVVTDYFTDVTERIYPVGRLDYDTSGLLLLTNDGSFSQK LTHPKHEVDKVYVAKIKGVPTKRDLLPLAKGIRIDGKRTAPANFQILSADIKTGSSVVEL TIHEGRNHQVKKMFQAVGFPVQKLKRERYGELTLQGLRPGQYRDLTKKEISQLLNQAK >gi|307679278|gb|GL456449.1| GENE 305 299311 - 299916 785 201 aa, chain - ## HITS:1 COG:SPy0367 KEGG:ns NR:ns ## COG: SPy0367 COG1386 # Protein_GI_number: 15674517 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing the HTH domain # Organism: Streptococcus pyogenes M1 GAS # 1 175 1 175 183 162 50.0 4e-40 MTLVSQIEAILFVVGEEGIGLEELAYLLEKSTAKTYEELTKLKEHYASDNKSALNILEVG NHFVLTTKKKYASLLKKYAQSPMSNALSQAALETLSIIAYKQPISRIEIDEIRGVQTSGS IQKLVARQLIEEKGRVDGPGRAILYGTTKYFMDYFGLKSLDELPDIQQMEDELEEELPMD LFFDRYQETNPMSETTEGEEA >gi|307679278|gb|GL456449.1| GENE 306 299913 - 300698 925 261 aa, chain - ## HITS:1 COG:lin2065 KEGG:ns NR:ns ## COG: lin2065 COG1354 # Protein_GI_number: 16801131 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 242 1 239 249 195 48.0 9e-50 MQEINLKLDVFEGPLDLLLHLIQKLEIDIYDIPITAVTEQYMSYIHAMQTLELEVAGEYL VMAATLMAIKSQMLLPKQELEIIDDEDFFEEEDPREALVAQLLEYRKFKYAATVLHEKEE ERKLYYTKEPMDMDDYKEEDTTLPPNQINTIDLFLAFHSMLEKKKNRQPVETTVASDDVS IEEKISAISERMRQVQKGKAVSFDSFFDSYSKQEIVTTFMALLELMKTGVIYAEQENNYS EILLFNTETQQEDTTEVEETQ >gi|307679278|gb|GL456449.1| GENE 307 300772 - 301662 895 296 aa, chain - ## HITS:1 COG:BS_ripX KEGG:ns NR:ns ## COG: BS_ripX COG4974 # Protein_GI_number: 16079408 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Bacillus subtilis # 1 296 1 296 296 319 53.0 4e-87 MEEQLVDYLHYLQIERGLSNNTRRSYERDLKKYVAFLQEQGLHSWDEVDRYMITEFLQSL HEEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKIQKLPSTLSVDEVTRLI ETPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLG DYAIQWIERYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQIEKNIT PHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEYFPRA >gi|307679278|gb|GL456449.1| GENE 308 301831 - 302760 1189 309 aa, chain - ## HITS:1 COG:lin2180 KEGG:ns NR:ns ## COG: lin2180 COG1073 # Protein_GI_number: 16801245 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Listeria innocua # 7 306 11 317 319 289 47.0 5e-78 MNRWLKILIALIVVIAIGLIAAGLYFYNYAVVPGKKDFINENTPGSKVVQTPEGAWFKDD KNRQEWSITSEDGLRLKAIYLPADKKSNRTVIMAHGYMGSAETMSVFAKMYHDWGYNVLA PDARGHGKSQGDYIGFGWPDRKDYVQWIEKVLTENGQQEQITLYGVSMGAATVMMTSGEK LPDNVKAIVEDCGYSTVNQELQYQLKELFNLPSFPLVNVTSGITKLRAGYFFGEASAVKQ LQKNHLPMLFIHGENDTFVPFSMLDEVYNATQGPKEKYVVPGAEHAKAYNKNPEKYKETV AAFLDKYIK >gi|307679278|gb|GL456449.1| GENE 309 302955 - 304046 1285 363 aa, chain - ## HITS:1 COG:L176316 KEGG:ns NR:ns ## COG: L176316 COG3589 # Protein_GI_number: 15672155 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 363 1 363 364 574 76.0 1e-163 MGKLGISIYPERSTFEKDKAYLDLAHKYGFKRVFTSLLQINDDREKVLAEFKKVVDYANQ LGMEVMVDINPALFEQLGISYDDLSFFHDMGAYGIRLDLGFTGQEEANMTRNPYGIKIEI NMSSGTSYVDNIMAYSPNTENLLGSHNFYPHRYTGLGYDHFVYCSEKFRKYNLNTMAFVN SHDATFGPWPTQDGLCSLEDHRDLEIATQVKHLVLTGLIDDISVGNAYASEAELAAMAEA FHAPYPSIKVDTEPEITEDERIALFDNLHSYRGDRSDYVLRSTMTRVYYKDRPFPVHTTR DIVRGDVLIDNVGYGQYKGETQIALKEMKNDGRVNVVGRISDDERFLLEFLKPWSSFKLI ENK >gi|307679278|gb|GL456449.1| GENE 310 304228 - 304977 806 249 aa, chain + ## HITS:1 COG:lin2475 KEGG:ns NR:ns ## COG: lin2475 COG0652 # Protein_GI_number: 16801537 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Listeria innocua # 57 243 4 193 194 238 62.0 7e-63 MKHKKMLAVASVAAFTLLLAGCNTTNNKGTTATSDSVAKSSESKTKDSVDLNSLDLPQLD DKVAEDQDLVQMVTSMGNIEIKLFPKQAPKTVENFMKHAKDGYYDGLTFHRVINNFMIQG GDPSGDGTGGNSIWNKPFEDEFSNQLYNIRGALSMANAGPNTNGSQFFIVQNTDDQSDGL LYDDYPKAIIDAYKKGGYPSLDKKHTVFGQVTKGMDIVDKIAKVEVGANDKPKTDVKIEK INILQEAKK >gi|307679278|gb|GL456449.1| GENE 311 305021 - 305395 523 124 aa, chain - ## HITS:1 COG:SA0358 KEGG:ns NR:ns ## COG: SA0358 COG5294 # Protein_GI_number: 15926072 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 102 5 100 122 61 37.0 3e-10 MKFIKFLVVTAIVIGGGLFGAKFYAEKNSGELAGVLDQLNPLVKEGNVYVKTKKADSVNG YGIASYTQVAADEEGKTREITFTADHELKTDHYLKVSNKGAHINTYEEVNQDQVPEKALQ AIQK >gi|307679278|gb|GL456449.1| GENE 312 305538 - 306077 585 179 aa, chain - ## HITS:1 COG:no KEGG:EF1531 NR:ns ## KEGG: EF1531 # Name: not_defined # Def: TetR family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 179 1 179 179 308 99.0 5e-83 MVRTKVYTKEKILNVAEKILVDKGFSNLTARNIADTMGISTQPIYLEFVNMDDLKRTLIK SLFHRMQLFYKADVGASDPVIALGLNFILFAQKHQKIYTALFMKAHGYEEELQQMLQTFF EERLLLDKKYVQMDKGKFVELFPKMVVIYLGLATAVTMKTIDLTKNQEIQLLSQLLIEE >gi|307679278|gb|GL456449.1| GENE 313 306302 - 307600 1568 432 aa, chain - ## HITS:1 COG:VC1282 KEGG:ns NR:ns ## COG: VC1282 COG1455 # Protein_GI_number: 15641295 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Vibrio cholerae # 1 426 6 428 446 275 38.0 1e-73 MLDKLTVWIENHLAGPMAKIANQRHLRAVRDGIIATLPLIIVGSFFLIIAFPPLPESWGI TQFLTSNAATILLPYRMTMYIMALYATFGIGASLAKSYNLDQVSGGILATIAFLLTLVPV AIPEEASKAAGVSGFVLPMANLGGAGMFVGIVTSIIAVEIYRVTDKSKFKITMPDNVPPA VARSFESLTPTLIVMLLIGSITYYLGFDWHTFVGNLVGPLVQAADSLLSVLLLVFLTTFF WFFGIHGASIVGSLARPLWLQLLEENTTAKAAGEALPRIAAEPFYQWFIWIGGAGATIGL AILLAFRAKSEYGSKLGKAILAPSIFNINEPVIFGVPIVLNPILMIPFIFAPMVLATIAW FATKLGLVSEVVFTAPWTLPGPIGAFMATGGDWRAAVLNIFLILVAILIYYPFFVAYDKN ELAKEQGKQIEE >gi|307679278|gb|GL456449.1| GENE 314 307627 - 307929 314 100 aa, chain - ## HITS:1 COG:no KEGG:EF1528 NR:ns ## KEGG: EF1528 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 100 1 100 100 139 100.0 3e-32 MENNQAMVPKFSVKSAGFLFSMGLLCGVLLPSVLLWTFSLPFNIGAMIFLPVGIAFALAY SHYFIETKTGFCKRFIWLFLISLILLELISYLWLIKGVIF >gi|307679278|gb|GL456449.1| GENE 315 308068 - 309384 2046 438 aa, chain - ## HITS:1 COG:SP1079 KEGG:ns NR:ns ## COG: SP1079 COG0536 # Protein_GI_number: 15900948 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Streptococcus pneumoniae TIGR4 # 3 438 1 434 434 607 76.0 1e-173 MSMFLDQVTIDVKAGKGGDGMVAFRREKYVPDGGPAGGDGGRGGGGVLVVEEGLRTLMDF RFNRHFKATPGENGMSKGMHGRGSEDLLVKVPPGTTVRDAETGALIGDLIENGQTLVVAK GGRGGRGNIRFASPRNPAPEIAENGEPGQERKIELELKVLADVGLVGFPSVGKSTLLSVI SSARPKIGAYHFTTLVPNLGMVTTSDGRSFAAADLPGLIEGASQGVGLGTQFLRHIERTR VILHVIDMSGMEGRDPYEDYLAINKELASHNLRLMERPQIIVANKMDMPEAEENLAKFKE QLAKERTDEYADELPIFPISGVTRKGIEPLLNATADLLEVTPEFPLYEDEVVEEETVRYG FQPEGPEFTIDREPDASWVLSGEKLEKLFEMTNFDHDETVMRFARQLRGMGVDEALRARG AKDGDIVRIGNFEFEFVE >gi|307679278|gb|GL456449.1| GENE 316 309672 - 310682 1210 336 aa, chain + ## HITS:1 COG:ECs2022 KEGG:ns NR:ns ## COG: ECs2022 COG0057 # Protein_GI_number: 15831276 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Escherichia coli O157:H7 # 4 336 3 333 333 456 69.0 1e-128 MTVKVGINGFGRIGRLAFRRIKEVSDDIEVVAINDLTSPTMLAHLLQFDSTHGTYPGTVT ATENGIVVDGEETRVYAEPDASKIPWVKENGVDVVLECTGFYTSEEKAQAHLDAGVKRVV ISAPAGAMKTIVYNVNDDTLDANDKIISAGSCTTNCLAPMAYFLNNEFGIEVGTMTTVHA YTSTQMLLDGPVRGGNLRAARSAADNTIPHSTGAAKAIGLVIPELNGKLQGHAQRVPVVD GSLTELVSILKTKVTADQVNEAMKKHTIDNPSFGYDDREIVSGDIIGTTEGSIFDPTQTE VTTAGDFQLVKTVAWYDNEYGFTCQMIRLLEKFANL >gi|307679278|gb|GL456449.1| GENE 317 310733 - 311182 491 149 aa, chain - ## HITS:1 COG:lin2070 KEGG:ns NR:ns ## COG: lin2070 COG0735 # Protein_GI_number: 16801136 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Listeria innocua # 9 148 7 146 152 201 70.0 3e-52 MDSTAALKKTKKQLHESGFKLTPQREATVLVLLENEKDHLSAEEIYFLVKQKSPEIGLAT VYRTLEILTDLKVVDKVSFNDGLARYDLRKEGAKHFHHHLLCLECGTIEEVEEDLLGEVE QIVESRYHFLVKDHRLTFHGICQSCQSKH >gi|307679278|gb|GL456449.1| GENE 318 311298 - 312179 525 293 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains [Anoxybacillus flavithermus WK1] # 14 284 10 281 285 206 41 7e-52 MRELLATTFTGIVVDENEQFYFVQKNGITFRLKKEEGTHAIGEAVEGFGYLNQKQEPALT TTIPTVRIGSYGFGTVTGTRRDLGVFVDVGLPDKDVVISLDELPTMRELWPKKEDRVMVT LKVDSKDRIWGELADEKVFKAMAKRGNAEMQNQNLTGHVYRLKLAGTYILTDDLYIGFIH PSERFQEPRLGEKVVGRVIGVRPDGVLNLSLKPRSHEVISDDALMILTFLERANDHQIPF TDKSSPDEIKQTFGISKAQFKRALGHLMKQKLIKQEDGKTILIGSLEQSKEKN >gi|307679278|gb|GL456449.1| GENE 319 312253 - 314316 2432 687 aa, chain - ## HITS:1 COG:no KEGG:EF1523 NR:ns ## KEGG: EF1523 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 687 1 691 691 885 96.0 0 MTKKCPKCRNEFDAELTTCPTCGYSLTDTTVDKEEAETTSTNIDFETQENEQHEDQLNEN IEWSELKDMSLGHVMELFGESPEEESNDDKKEESIEDNLIVSDSEDVSDSEAVLQEGASE ETHDSVEETIPATEAMPTHSTEEKLATDEAVNLEETTEETTTVEAETAEVSKTVKSEEEA LTEISGTEVISTTSEEEIFSQPPIEDQDVTPNETLQAYIQAHRADTEMSENPSEETAETQ ELENSGEAVLTQAETPTESISDSEEGLTSAASLEAPSEADATEEKVSDSGVIPPMNETGN AQPAPAPKKPSKKVVFVALAVVLLAGGSAWAYHDQTQKAAAQEAAALTKKTDTLKDELAA FYTTKEQVFIKPDMVTVSPEKLSKQVAEIKDSEEYSQLNKQIQTLKVKQQTIQQINQLFE APIVNGNELKPAILAADQPISVKKLTGNDPFDQLMNQAIDQANQQYNQLQKAKKAVEVIY KDGKTTNQLNRDTYQAAKAEVDKVTSDKLKKELVKQVTTADQALTKVEEEQKRIAEEQAA AEQAKQAEEQAKQAAAAKKEDAKKEETAKTEANGYTAPNSDGVYTSPLYAPDAADIADSS NPAWTWAPGVKEKVLDTVIARGYVVPGGYSLEPAKIVNGEGYYNLYATNNQSKLLEGTTE KNVHMYLVTINAKTGWFKGNASRNAGQ >gi|307679278|gb|GL456449.1| GENE 320 314468 - 315574 1556 368 aa, chain - ## HITS:1 COG:lin1491 KEGG:ns NR:ns ## COG: lin1491 COG0568 # Protein_GI_number: 16800559 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Listeria innocua # 10 368 17 374 374 494 79.0 1e-139 MEKETSKKYEAAVAAFIKENKPKGTVVYDDLANQLATPYTLDAEAMEKLIQKVEDAGISV VDENGDPSEHSLKKDEKEAEKAQAEDLSAPTGVKINDPVRMYLKEIGRVQLLTAAEEVEL ALKIEEGDQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKG FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIG AEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQL EDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS KQLKDFLE >gi|307679278|gb|GL456449.1| GENE 321 315683 - 317569 1887 628 aa, chain - ## HITS:1 COG:lin1492 KEGG:ns NR:ns ## COG: lin1492 COG0358 # Protein_GI_number: 16800560 # Func_class: L Replication, recombination and repair # Function: DNA primase (bacterial type) # Organism: Listeria innocua # 4 623 3 622 626 450 41.0 1e-126 MAQRIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKNYMGLCPFHEERSPSFSVAEDKQIFH CFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVVDTPENQQRRSLL QLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKNEQ LDETLFEPSGLFVQRDNGTFLDRFYQRIMFPINDPQGNVIAFSGRLLKTADFPGDEMPKY LNSPETTLFNKRETLFNFDKARKEIRKENTVLLFEGFMDVIAAWQSGVKSGVASMGTSLT NEQIRRLERVAKEVVICYDGDNAGVQATNRAIQLLQENSHFDLSIVSIPEKLDPDEYVRK YGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELLRELTNVQSPLERDRY LNQIAQEFQLSVHSLEEQFNQLKQEQRSVQRQERQRFYQDEMMPPPMEEPVFEENHVQNK LPLTQVQKAERSLLFRLMNEQGVRQTIQQLPDFSFAHDEYQELYFLLESYATLHQSFDIA DFINFLQDNQTKQLAIEIAYQNLSEESSEREVADLLHVIALSSIAEAIEQKKIQQQEAKR VGNQQLEAELTMEIIQLARQLKAQRTFT >gi|307679278|gb|GL456449.1| GENE 322 317886 - 320222 2386 778 aa, chain - ## HITS:1 COG:SP1623 KEGG:ns NR:ns ## COG: SP1623 COG0474 # Protein_GI_number: 15901459 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pneumoniae TIGR4 # 10 770 8 778 778 672 48.0 0 MLNKVDLKKGLSTEEVAKQKELGLQNNYEENVAKSTKDIIFDNVMTLFNFLNFAIAVCLL FVGAYSNLAFLAIIIVNMSIGIFQEIHARNLVQKLSIVAKENVHVVRNGVQQEIDTKELV MEDIVIISAGEQVPSDMEVIDGKVEANEALLTGESDLIEKEIGDTLLSGSFIVSGQAYAR VIHVGAENYAVKITQEAKVHKPIQSELVNSIRKVSKFTSWVIIPLGIILFVEAFWLRDAG IKTSVVASAAALLGMLPKGLVLLISIALTTGVIKLAKKRILVQDMYSIETLAHVDTLCLD KTGTITEGKMKVQKAIILHDKYEELFPQIIGSYLSESTDNNITMQAIRDHYEVSNRFGAK EVLAFSSERKWGAIEFPEIGTVYLGAPERLVDDSRLPEAVFTAQENGYRVLMLAIAEQQP LNETKMPYLEPLAILEIDDPIRQNAKETLAYLKEEGIDLKVISGDNPVTVSNIARRAGLP GYESYIDLSTKTTEAEVREAVQQYTVFGRVSPQQKRTIVRELKDTEHVVAMTGDGVNDVL ALREADCSIAMAEGDGATRQISNLVLLDSDFTTLPDVLFEGRRVVNNVTRVSSVFFIKTI YSFILSIICALTAIAFPFIPIQVTLIDLAIEGYPAFFLSFEGDKRKVVGKFLPTALKNAS VNALLVVVNIIAVYLIGQNQGFSSLDTTTLMYYLLVGISCMAVVRACLPLNPLRIFLVFS TIIGIYVAAMLFHNILEIGFLTSQTMGLFFIMMAINIVVRVTIGFVQMKRAGKTIKDL >gi|307679278|gb|GL456449.1| GENE 323 320351 - 320935 718 194 aa, chain - ## HITS:1 COG:SPy1147 KEGG:ns NR:ns ## COG: SPy1147 COG0741 # Protein_GI_number: 15675124 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Streptococcus pyogenes M1 GAS # 2 194 12 197 199 156 45.0 2e-38 MLLLFVGLIAGLGYLGYKIHQNVETVMTFEKQVEAEVKKNKIPEYKTLALAIIYTESKGK SGDIMQSSESVYGQQEVIETPEESIAHGVKFLAEALAKAKEAGCDEWTGVQAYNYGLDYI QFVKERGGKHTTELAEEYSREVLSPLLGNDQNTKYRYYRWQALVYNGGYLYQNGGNMFYA EIVKMNRWFIEKLN >gi|307679278|gb|GL456449.1| GENE 324 321259 - 321948 483 229 aa, chain - ## HITS:1 COG:SP1616 KEGG:ns NR:ns ## COG: SP1616 COG0036 # Protein_GI_number: 15901453 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Streptococcus pneumoniae TIGR4 # 1 229 1 229 231 375 74.0 1e-104 MNKVEFSPSLMTMDLDKFKQQITFLNDHVASYHIDIMDGHYVPNITLSPWFIEELRKISK LPVSAHLMVTNPSFWVPQLVDIKCEWICMHAEVLDGLAFRLIDQIHNANLKAGIVLNPET PIESIFSYIELLDKITIMTVDPGFAGQRFIEGTLDKIVALRNLREEKGYRYVIEMDGSSN RNSFKRIDAAGPDIYIVGRSGLFGLNEDIEKAWRMMSRDYEEMTGKKIP >gi|307679278|gb|GL456449.1| GENE 325 322086 - 323186 1250 366 aa, chain - ## HITS:1 COG:SP1617 KEGG:ns NR:ns ## COG: SP1617 COG1299 # Protein_GI_number: 15901454 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Streptococcus pneumoniae TIGR4 # 4 366 2 361 361 404 67.0 1e-112 MKKLKELNLKGHLLTAISYLIPIVCGAGFLIAIGMGFGGSSQGTLVPGEFSLWDALATMG GAGLGLLPVVISTGISFSIAGKPGIAPGFIIGLTANAVGAGFIGGILGGYLAGYLVLAIL KYVKLPNWARGLMPTLIIPFLTSITGGLIMVYIIGTPITAFTSLLTNFLDSLGNSSLLIF GGVIGLLSGIDYGGPINKTVFAFVLTMQAEGLNGPITALQLVNTATPIGFGLAFFFAKLF RKNIYTKLEVETLKSAVPMGVINIVEGVIPLVMNDIVRGVIATAIGGFVGGATTMILGAD ATVPFGGVLMIPTMSKPLAGVIAIVVNAVVTGLVLAIIKKDVTEKDMEALVEKEEEEINL EDIQIF >gi|307679278|gb|GL456449.1| GENE 326 323296 - 323745 459 149 aa, chain - ## HITS:1 COG:SP1619 KEGG:ns NR:ns ## COG: SP1619 COG1762 # Protein_GI_number: 15901456 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Streptococcus pneumoniae TIGR4 # 1 148 1 148 149 168 55.0 3e-42 MEVKDIIDLETVKTNMNVNTKEEALKELANLLLENGNISDEKGFIKDIYAREAEGQTGIG NYLAIPHGKSAYVKKIGVAIGINGTEIPWESLDDNGVKGIILFAVGNDHKETTSHLKLLS LFARKLGNDEVVREFLQSKSPEDVVKAFS >gi|307679278|gb|GL456449.1| GENE 327 323765 - 324082 534 105 aa, chain - ## HITS:1 COG:SP1618 KEGG:ns NR:ns ## COG: SP1618 COG1445 # Protein_GI_number: 15901455 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system fructose-specific component IIB # Organism: Streptococcus pneumoniae TIGR4 # 1 103 6 108 108 125 79.0 1e-29 MKIVGVAACTVGIAHTYIAQEKLENAAKKAGVEIHVETQGTIGIENKLTDEQIKEADIVI LAIDVKISGRERFDGKRIIQVPTEVAVKSPTKLIEKAEEVMTQEK >gi|307679278|gb|GL456449.1| GENE 328 324082 - 324534 531 150 aa, chain - ## HITS:1 COG:no KEGG:CAR_c23180 NR:ns ## KEGG: CAR_c23180 # Name: not_defined # Def: hypothetical protein # Organism: Carnobacterium_17-4 # Pathway: not_defined # 1 146 1 145 145 101 44.0 8e-21 MNVNPLYQVFLNQELLSKQQVYQFIAETAAPLLTPEEKKQIEESLVNREKMGSNQIAEQI VLPHLENALLKKSEIYLIGLKTEIQEWTADIKQVKLIIVILLKENEQLKVKKEISRFTRK LANEDFLEKLLRLKTETDFYKIIEKFEEEK >gi|307679278|gb|GL456449.1| GENE 329 324524 - 326005 865 493 aa, chain - ## HITS:1 COG:lin2243 KEGG:ns NR:ns ## COG: lin2243 COG3711 # Protein_GI_number: 16801308 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Listeria innocua # 3 489 4 485 485 320 39.0 6e-87 MSSKKERGQKLLLLLSKKQDYMTAEELANCLSTSPKTVYRLIKKINDEFSEGSLILSEKG RGYKLDYERFMEQNRHLVEKESDFSPRERRNRILEELLLASPQAKNVYELFARYYVGDSV IFSDEQQLSEDLKKYDLTLKRKNRTLAIIGEERAIRKAISDRIQLLNIIDIEDLRNNKAL NFNNYDVLFTLDQVRNIEKKLDITIPHPYNVNIFSHLYILISRSRKVAISEKYQLSNEEE QELTKDLVLKKVAQTTIQQIETYLNKRLPNVEIYYLYQYLVSSRMQGSFSKVTNFSFKVM QVTQFYLEEMSAQLKILTDNDQLFLELASHIKPMINRLENSIHVKNSLLDQIKMTYETIF GKIAQVSKQVSKNYQLPAINEDENGFITLYFARMIETNQLPIRTLIMCTTGIGTSELLRV KVEKKFPELQIVEIIATRNIKKSLKDYSDIELILTTIHLQEKVPIKSLLVSAMFTMDDQY RLQRKVEEIYHER >gi|307679278|gb|GL456449.1| GENE 330 326246 - 328243 2475 665 aa, chain - ## HITS:1 COG:YPO2628_1 KEGG:ns NR:ns ## COG: YPO2628_1 COG1263 # Protein_GI_number: 16122841 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Yersinia pestis # 3 401 5 406 410 454 58.0 1e-127 MKAYMQRMGRSLMLPVAVLPAASLLVGIANWIVGTIGASPATTFLMNGGLAILNNLALLF AVGLALGMSKDKDGSAALAGLVAYLVPKTVLAPASIQAIKGFKDIAEVNPAFNSMDNNVF VGIVAGLVAAAMYNRFSGVKLPMALSFFSGKRLVPIMSAISMLAISAVLFFFWPVVYNGL VAFGKGISSLGFVGAGLYGFFNRLLIPTGLHHALNSVFWFDVAGINDIGNFLAGQQALDT GKAIVGQTGMYQAGFFPVMMFGLPAGAFAIYQCARPEKKKVTASLMLAAGFAAFFTGVTE PLEFSFMFVAWPLYVLHAVFTGISLAFAAFMHWTAGFAFSAGFVDFFLSLKNPVANHPMM LVVQGLVFAAIYYFGFRFAITKFNLMTPGREEGDGEETPDVAEGDNKFASLARRIYDGLG ADANVTSIDNCTTRLRLTVKDTGKVDQAKIKATGVPGVKVIDDTNIQVIVGTEVQFVADE MQRLYNHQAPATPVKETPVSQPVVEEKAPVSTKETELYSVANGKVIPISEVPDDVFSAKM MGDGFAVVPTDGEVSTPVAGKITSIFPTKHALGIQTDSGIEVLLHMGLDTVELQGGPFTL HVEEGQVVKQGDKIATIDLAALEQAGKKSDLIVVFTNQDIVAQYDLQKAGQTTSMNDVIG NVTVK >gi|307679278|gb|GL456449.1| GENE 331 328280 - 329113 879 277 aa, chain - ## HITS:1 COG:BS_sacT KEGG:ns NR:ns ## COG: BS_sacT COG3711 # Protein_GI_number: 16080858 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus subtilis # 1 274 1 272 276 187 38.0 2e-47 MKIKKVLNQNAVLVLDEGQEKVAVGKGVGFNKTKNDVLSRQLVERMFVMEPEGLKKLQVL LSQIEDKYFLASEEIIQHAETVLGEKLNEHINIGLSDHIAFAAENIQNNIIVRNKLLSEI EILYSEEFAIAQWAVEYLTQTLEIPFSYDEAGYIAIHIHSARSGRTDNSKSIREVTIVSE IIHLIEQELAIDIHDDKNSLSYSRLVNHLRLFIHRFQQNQYAVLDEEILEVVKKKYAESY EISKKVQVLLMRNFHYQVPNEELGYLSIHIERLRMTK Prediction of potential genes in microbial genomes Time: Tue Jul 5 20:21:32 2011 Seq name: gi|307679277|gb|GL456450.1| Enterococcus faecalis TX0411 genomic scaffold Scfld156, whole genome shotgun sequence Length of sequence - 231227 bp Number of predicted genes - 221, with homology - 208 Number of transcription units - 116, operones - 54 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 2 1 Op 2 . - CDS 3180 - 3269 154 ## - Prom 3290 - 3349 5.5 3 2 Tu 1 . - CDS 3427 - 3516 73 ## - Prom 3540 - 3599 8.4 4 3 Tu 1 . - CDS 3694 - 4173 500 ## COG1576 Uncharacterized conserved protein - Prom 4202 - 4261 4.2 + Prom 4479 - 4538 8.6 5 4 Tu 1 . + CDS 4574 - 5872 1499 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - Term 5913 - 5966 1.1 6 5 Tu 1 . - CDS 5969 - 6589 847 ## COG0073 EMAP domain - Prom 6626 - 6685 3.2 - Term 6622 - 6662 1.1 7 6 Op 1 13/0.000 - CDS 6693 - 7517 1017 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 8 6 Op 2 13/0.000 - CDS 7501 - 8271 989 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 9 6 Op 3 . - CDS 8293 - 8766 562 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 10 6 Op 4 . - CDS 8769 - 9512 919 ## COG0434 Predicted TIM-barrel enzyme 11 6 Op 5 1/0.321 - CDS 9524 - 9934 532 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 12 6 Op 6 . - CDS 9949 - 10680 833 ## COG2188 Transcriptional regulators - Prom 10714 - 10773 9.4 - Term 10721 - 10783 19.0 13 7 Op 1 . - CDS 10784 - 11239 687 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins - Term 11264 - 11307 -0.9 14 7 Op 2 1/0.321 - CDS 11387 - 11701 527 ## COG0526 Thiol-disulfide isomerase and thioredoxins 15 7 Op 3 . - CDS 11713 - 12789 1232 ## COG1363 Cellulase M and related proteins - Prom 12905 - 12964 5.6 + Prom 12985 - 13044 8.6 16 8 Op 1 . + CDS 13096 - 13437 520 ## COG5584 Predicted small secreted protein 17 8 Op 2 . + CDS 13443 - 13553 64 ## + Prom 13605 - 13664 7.6 18 9 Tu 1 . + CDS 13756 - 15411 1643 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Term 15429 - 15490 16.7 - Term 15422 - 15473 14.1 19 10 Op 1 13/0.000 - CDS 15478 - 16296 916 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 20 10 Op 2 . - CDS 16286 - 17059 943 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 21 10 Op 3 . - CDS 17084 - 18235 1375 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase 22 10 Op 4 9/0.000 - CDS 18281 - 18757 606 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 23 10 Op 5 . - CDS 18784 - 19221 529 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA - Prom 19281 - 19340 1.8 24 11 Op 1 . - CDS 19368 - 20462 609 ## EF3047 hypothetical protein - Term 20475 - 20532 13.0 25 11 Op 2 . - CDS 20549 - 21337 874 ## COG3394 Uncharacterized protein conserved in bacteria - Prom 21383 - 21442 2.8 + Prom 21394 - 21453 9.3 26 12 Tu 1 . + CDS 21509 - 22261 648 ## COG1737 Transcriptional regulators + Term 22276 - 22323 13.5 - Term 22264 - 22311 13.5 27 13 Op 1 . - CDS 22330 - 22881 444 ## PROTEIN SUPPORTED gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) - Term 22899 - 22946 3.2 28 13 Op 2 . - CDS 22958 - 23725 710 ## EF3051 hypothetical protein - Prom 23785 - 23844 5.5 + Prom 23842 - 23901 8.1 29 14 Tu 1 . + CDS 23951 - 24313 429 ## EF3052 hypothetical protein + Term 24330 - 24401 16.6 - Term 24329 - 24378 10.5 30 15 Op 1 . - CDS 24433 - 25008 567 ## COG3859 Predicted membrane protein - Prom 25050 - 25109 5.4 31 15 Op 2 . - CDS 25171 - 25797 715 ## COG3212 Predicted membrane protein - Prom 25821 - 25880 5.7 - Term 25853 - 25900 7.7 32 16 Tu 1 . - CDS 25901 - 26686 713 ## EF3055 hypothetical protein - Prom 26763 - 26822 7.3 + Prom 26747 - 26806 7.2 33 17 Tu 1 . + CDS 26920 - 27654 702 ## COG3764 Sortase (surface protein transpeptidase) + Term 27655 - 27712 13.1 - Term 27651 - 27692 7.5 34 18 Op 1 . - CDS 27702 - 27932 365 ## EF3057 hypothetical protein 35 18 Op 2 . - CDS 28021 - 28491 668 ## COG0394 Protein-tyrosine-phosphatase 36 18 Op 3 . - CDS 28532 - 29101 498 ## COG1309 Transcriptional regulator - Prom 29190 - 29249 8.2 - Term 29195 - 29258 13.7 37 19 Tu 1 . - CDS 29279 - 30724 1747 ## COG3883 Uncharacterized protein conserved in bacteria - Prom 30956 - 31015 10.3 - Term 30961 - 31006 8.2 38 20 Op 1 19/0.000 - CDS 31029 - 31538 479 ## COG2891 Cell shape-determining protein 39 20 Op 2 . - CDS 31535 - 32395 1050 ## COG1792 Cell shape-determining protein - Prom 32426 - 32485 6.4 - Term 32515 - 32564 6.4 40 21 Op 1 26/0.000 - CDS 32577 - 34691 1679 ## PROTEIN SUPPORTED gi|62291006|ref|YP_222799.1| polynucleotide phosphorylase/polyadenylase - Prom 34743 - 34802 3.1 - Term 34822 - 34870 7.1 41 21 Op 2 . - CDS 34878 - 35183 511 ## PROTEIN SUPPORTED gi|227517326|ref|ZP_03947375.1| ribosomal protein S15 - Prom 35377 - 35436 5.8 + Prom 35338 - 35397 8.5 42 22 Tu 1 . + CDS 35427 - 35990 812 ## COG0242 N-formylmethionyl-tRNA deformylase + Term 36000 - 36043 12.4 - Term 35986 - 36031 12.0 43 23 Op 1 . - CDS 36037 - 36813 701 ## COG0561 Predicted hydrolases of the HAD superfamily 44 23 Op 2 . - CDS 36823 - 37419 494 ## COG4912 Predicted DNA alkylation repair enzyme - Prom 37483 - 37542 4.1 - Term 37490 - 37535 9.2 45 24 Tu 1 . - CDS 37548 - 38351 740 ## COG2116 Formate/nitrite family of transporters + Prom 38439 - 38498 11.1 46 25 Tu 1 . + CDS 38675 - 39286 1045 ## PROTEIN SUPPORTED gi|29377528|ref|NP_816682.1| 30S ribosomal protein S4 + Term 39329 - 39362 2.1 + Prom 39342 - 39401 8.1 47 26 Op 1 . + CDS 39446 - 39994 730 ## COG1268 Uncharacterized conserved protein 48 26 Op 2 . + CDS 40056 - 40592 630 ## COG0681 Signal peptidase I + Term 40595 - 40653 17.3 - Term 40583 - 40641 13.5 49 27 Tu 1 . - CDS 40647 - 44531 3314 ## EF3074 hypothetical protein - Prom 44774 - 44833 7.0 - Term 44949 - 45006 15.0 50 28 Op 1 . - CDS 45026 - 48940 2608 ## EF3075 hypothetical protein 51 28 Op 2 . - CDS 48942 - 49289 264 ## EF3076 cell wall surface anchor family protein - Prom 49336 - 49395 6.1 - Term 49517 - 49582 18.4 52 29 Op 1 . - CDS 49645 - 50256 916 ## COG4493 Uncharacterized protein conserved in bacteria 53 29 Op 2 . - CDS 50291 - 50848 276 ## PROTEIN SUPPORTED gi|116511539|ref|YP_808755.1| SSU ribosomal protein S5P alanine acetyltransferase - Prom 50868 - 50927 3.4 - Term 50879 - 50931 15.0 54 30 Op 1 . - CDS 50933 - 52153 1330 ## COG2195 Di- and tripeptidases 55 30 Op 2 . - CDS 52175 - 53818 1707 ## COG4166 ABC-type oligopeptide transport system, periplasmic component 56 31 Op 1 5/0.036 - CDS 54395 - 55348 1238 ## COG4607 ABC-type enterochelin transport system, periplasmic component 57 31 Op 2 10/0.000 - CDS 55387 - 56142 274 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 58 31 Op 3 11/0.000 - CDS 56139 - 57104 761 ## COG4605 ABC-type enterochelin transport system, permease component 59 31 Op 4 . - CDS 57101 - 58048 889 ## COG4606 ABC-type enterochelin transport system, permease component 60 31 Op 5 . - CDS 58045 - 58116 89 ## - Prom 58184 - 58243 3.4 + Prom 58148 - 58207 5.0 61 32 Tu 1 . + CDS 58233 - 58685 609 ## COG5506 Uncharacterized conserved protein + Term 58752 - 58791 6.0 - Term 58733 - 58783 10.5 62 33 Tu 1 . - CDS 58871 - 58972 131 ## - Prom 59066 - 59125 6.2 - Term 59105 - 59153 11.0 63 34 Tu 1 . - CDS 59162 - 61432 2790 ## COG2918 Gamma-glutamylcysteine synthetase - Prom 61571 - 61630 5.0 + Prom 61515 - 61574 7.8 64 35 Op 1 . + CDS 61603 - 62109 408 ## COG1335 Amidases related to nicotinamidase + Term 62203 - 62261 8.2 + Prom 62214 - 62273 7.0 65 35 Op 2 . + CDS 62299 - 63195 1123 ## COG1284 Uncharacterized conserved protein + Term 63205 - 63261 12.2 - Term 63200 - 63228 2.1 66 36 Tu 1 . - CDS 63245 - 63643 476 ## COG3607 Predicted lactoylglutathione lyase 67 37 Tu 1 . - CDS 63763 - 64248 685 ## COG3542 Uncharacterized conserved protein - Prom 64275 - 64334 2.9 - Term 64314 - 64378 9.2 68 38 Op 1 2/0.214 - CDS 64408 - 65736 1005 ## PROTEIN SUPPORTED gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 69 38 Op 2 1/0.321 - CDS 65739 - 66566 1116 ## COG0561 Predicted hydrolases of the HAD superfamily 70 38 Op 3 6/0.000 - CDS 66591 - 70169 4491 ## COG1196 Chromosome segregation ATPases 71 38 Op 4 . - CDS 70190 - 70882 880 ## COG0571 dsRNA-specific ribonuclease - Prom 70913 - 70972 7.3 - Term 71050 - 71085 5.3 72 39 Tu 1 . - CDS 71136 - 71654 420 ## EF3099 transporter accessory protein, putative - Prom 71687 - 71746 5.0 - Term 71953 - 71988 -1.0 73 40 Op 1 . - CDS 72007 - 72273 295 ## EF3102 hypothetical protein 74 40 Op 2 . - CDS 72260 - 73618 532 ## EF3103 hypothetical protein 75 40 Op 3 . - CDS 73563 - 74288 564 ## COG1131 ABC-type multidrug transport system, ATPase component - Term 74292 - 74326 3.7 76 40 Op 4 . - CDS 74355 - 74570 213 ## EF3105 hypothetical protein - Prom 74703 - 74762 15.3 - Term 74900 - 74947 10.4 77 41 Op 1 5/0.036 - CDS 74953 - 76734 2368 ## COG0747 ABC-type dipeptide transport system, periplasmic component 78 41 Op 2 49/0.000 - CDS 76763 - 77686 1082 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 79 41 Op 3 6/0.000 - CDS 77714 - 78676 1117 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 80 41 Op 4 44/0.000 - CDS 78676 - 79620 1037 ## COG4608 ABC-type oligopeptide transport system, ATPase component 81 41 Op 5 . - CDS 79620 - 80627 601 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 - Prom 80676 - 80735 8.5 - Term 80869 - 80906 6.6 82 42 Op 1 3/0.071 - CDS 80923 - 81162 411 ## COG0236 Acyl carrier protein - Prom 81217 - 81276 4.0 83 42 Op 2 . - CDS 81299 - 82300 1453 ## COG0416 Fatty acid/phospholipid biosynthesis enzyme - Prom 82328 - 82387 6.4 84 43 Tu 1 . - CDS 82403 - 84439 2141 ## COG1200 RecG-like helicase - Prom 84483 - 84542 4.1 - Term 84477 - 84526 15.6 85 44 Op 1 9/0.000 - CDS 84555 - 86231 2188 ## COG1461 Predicted kinase related to dihydroxyacetone kinase 86 44 Op 2 . - CDS 86314 - 86676 638 ## COG1302 Uncharacterized protein conserved in bacteria - Prom 86720 - 86779 6.6 + Prom 86684 - 86743 7.1 87 45 Tu 1 . + CDS 86950 - 87138 318 ## PROTEIN SUPPORTED gi|29377572|ref|NP_816726.1| 50S ribosomal protein L28 + Term 87152 - 87193 1.3 - Term 87185 - 87237 18.1 88 46 Op 1 6/0.000 - CDS 87241 - 87885 659 ## COG1564 Thiamine pyrophosphokinase 89 46 Op 2 10/0.000 - CDS 87882 - 88535 977 ## COG0036 Pentose-5-phosphate-3-epimerase 90 46 Op 3 7/0.000 - CDS 88559 - 89452 848 ## COG1162 Predicted GTPases - Prom 89635 - 89694 4.1 - Term 89623 - 89662 -0.4 91 46 Op 4 17/0.000 - CDS 89701 - 91857 2360 ## COG0515 Serine/threonine protein kinase 92 46 Op 5 3/0.071 - CDS 91854 - 92603 825 ## COG0631 Serine/threonine protein phosphatase 93 46 Op 6 20/0.000 - CDS 92605 - 93984 1471 ## COG0144 tRNA and rRNA cytosine-C5-methylases 94 46 Op 7 26/0.000 - CDS 93990 - 94931 1370 ## COG0223 Methionyl-tRNA formyltransferase 95 46 Op 8 4/0.071 - CDS 94924 - 95418 661 ## COG0242 N-formylmethionyl-tRNA deformylase 96 46 Op 9 3/0.071 - CDS 95445 - 97877 2397 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase - Prom 97907 - 97966 5.2 - Term 97963 - 98010 8.3 97 47 Op 1 25/0.000 - CDS 98032 - 98334 527 ## COG1758 DNA-directed RNA polymerase, subunit K/omega 98 47 Op 2 . - CDS 98339 - 98953 819 ## COG0194 Guanylate kinase - Prom 98988 - 99047 4.4 + Prom 99040 - 99099 5.0 99 48 Tu 1 . + CDS 99176 - 100657 1520 ## COG1686 D-alanyl-D-alanine carboxypeptidase + Term 100668 - 100709 10.1 - Term 100656 - 100696 7.4 100 49 Op 1 . - CDS 100701 - 101006 437 ## EF3130 hypothetical protein 101 49 Op 2 . - CDS 101062 - 101946 1070 ## COG1561 Uncharacterized stress-induced protein 102 49 Op 3 . - CDS 101963 - 102181 383 ## COG4443 Uncharacterized protein conserved in bacteria - Prom 102296 - 102355 5.0 - Term 102296 - 102353 -0.1 103 50 Tu 1 . - CDS 102357 - 102827 553 ## COG4405 Uncharacterized protein conserved in bacteria - Prom 102924 - 102983 6.7 - Term 102952 - 102989 3.1 104 51 Op 1 . - CDS 102996 - 103649 771 ## COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase 105 51 Op 2 . - CDS 103654 - 104727 1316 ## COG1312 D-mannonate dehydratase 106 51 Op 3 9/0.000 - CDS 104751 - 105203 705 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 107 51 Op 4 1/0.321 - CDS 105243 - 105785 618 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 108 51 Op 5 13/0.000 - CDS 105807 - 106679 1186 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 109 51 Op 6 . - CDS 106700 - 107536 846 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 110 51 Op 7 . - CDS 107549 - 108655 953 ## COG0371 Glycerol dehydrogenase and related enzymes 111 51 Op 8 . - CDS 108670 - 109671 913 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases 112 51 Op 9 . - CDS 109684 - 110583 897 ## COG1023 Predicted 6-phosphogluconate dehydrogenase - Prom 110629 - 110688 13.8 113 52 Tu 1 . + CDS 110994 - 111881 655 ## COG1737 Transcriptional regulators + Term 111937 - 111988 1.1 114 53 Tu 1 . - CDS 112015 - 112467 78 ## EF3145 hypothetical protein - Prom 112596 - 112655 5.0 115 54 Tu 1 . - CDS 113008 - 113724 475 ## EF3146 hypothetical protein - Prom 113746 - 113805 6.2 - Term 114185 - 114235 3.1 116 55 Op 1 . - CDS 114270 - 114848 331 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase - Prom 114870 - 114929 5.2 117 55 Op 2 . - CDS 114947 - 115159 170 ## gi|255970662|ref|ZP_05421248.1| predicted protein - Prom 115209 - 115268 7.2 - Term 115215 - 115272 5.1 118 56 Tu 1 . - CDS 115284 - 116150 1007 ## COG1426 Uncharacterized protein conserved in bacteria - Prom 116233 - 116292 5.1 119 57 Op 1 14/0.000 - CDS 116318 - 117622 1465 ## COG0612 Predicted Zn-dependent peptidases 120 57 Op 2 . - CDS 117615 - 118883 1235 ## COG0612 Predicted Zn-dependent peptidases - Prom 118982 - 119041 5.5 + Prom 118804 - 118863 7.7 121 58 Tu 1 . + CDS 119092 - 119541 761 ## COG1970 Large-conductance mechanosensitive channel + Term 119549 - 119579 2.0 - Term 119530 - 119574 7.1 122 59 Op 1 . - CDS 119582 - 120298 743 ## EF3154 hypothetical protein - Term 120323 - 120371 10.9 123 59 Op 2 . - CDS 120394 - 121101 688 ## EF3155 hypothetical protein - Prom 121171 - 121230 6.4 - Term 121340 - 121403 21.4 124 60 Tu 1 . - CDS 121497 - 122210 723 ## COG2188 Transcriptional regulators + Prom 122404 - 122463 4.4 125 61 Op 1 11/0.000 + CDS 122505 - 125216 2195 ## COG1554 Trehalose and maltose hydrolases (possible phosphorylases) 126 61 Op 2 . + CDS 125231 - 125881 720 ## COG0637 Predicted phosphatase/phosphohexomutase + Prom 126026 - 126085 6.9 127 62 Tu 1 . + CDS 126296 - 126889 276 ## EF3160 hypothetical protein + Term 126922 - 126958 2.5 - Term 127092 - 127132 -0.1 128 63 Tu 1 . - CDS 127242 - 127367 165 ## - Prom 127387 - 127446 3.2 + Prom 127393 - 127452 9.0 129 64 Tu 1 . + CDS 127651 - 128184 174 ## EF3161 hypothetical protein - Term 128185 - 128232 10.3 130 65 Op 1 . - CDS 128279 - 129250 1270 ## COG0462 Phosphoribosylpyrophosphate synthetase - Prom 129305 - 129364 4.9 131 65 Op 2 . - CDS 129425 - 129862 534 ## COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase - Prom 129896 - 129955 3.5 - Term 129938 - 129989 3.1 132 66 Op 1 . - CDS 129995 - 130549 577 ## COG0424 Nucleotide-binding protein implicated in inhibition of septum formation 133 66 Op 2 6/0.000 - CDS 130574 - 132706 1925 ## COG0323 DNA mismatch repair enzyme (predicted ATPase) 134 66 Op 3 . - CDS 132738 - 135314 2952 ## COG0249 Mismatch repair ATPase (MutS family) 135 66 Op 4 . - CDS 135315 - 135686 635 ## EF3168 hypothetical protein - Term 135716 - 135774 5.1 136 66 Op 5 2/0.214 - CDS 135775 - 136572 952 ## COG1692 Uncharacterized protein conserved in bacteria - Prom 136655 - 136714 11.7 - Term 136653 - 136697 2.3 137 67 Tu 1 . - CDS 136726 - 138282 2166 ## COG1418 Predicted HD superfamily hydrolase - Prom 138386 - 138445 7.2 - Term 138419 - 138451 3.2 138 68 Tu 1 . - CDS 138478 - 138573 62 ## - Term 138599 - 138650 4.4 139 69 Tu 1 . - CDS 138679 - 139725 1520 ## COG0468 RecA/RadA recombinase - Prom 139776 - 139835 4.8 140 70 Tu 1 . - CDS 139839 - 141083 212 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase - Prom 141195 - 141254 6.8 + Prom 141127 - 141186 8.3 141 71 Tu 1 . + CDS 141275 - 142480 1526 ## EF3173 hypothetical protein + Term 142505 - 142564 22.3 - Term 142493 - 142552 21.5 142 72 Op 1 2/0.214 - CDS 142559 - 143179 877 ## COG2910 Putative NADH-flavin reductase 143 72 Op 2 . - CDS 143247 - 143672 523 ## COG1959 Predicted transcriptional regulator - Prom 143698 - 143757 2.4 144 72 Op 3 . - CDS 143761 - 144144 312 ## COG3304 Predicted membrane protein - Prom 144182 - 144241 7.4 + Prom 144225 - 144284 4.2 145 73 Tu 1 . + CDS 144308 - 145099 892 ## EF3177 hypothetical protein + Term 145104 - 145167 6.4 - Term 145100 - 145146 8.1 146 74 Tu 1 . - CDS 145152 - 146288 1494 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases - Prom 146315 - 146374 2.7 - Term 146364 - 146404 7.1 147 75 Op 1 . - CDS 146418 - 147302 826 ## EF3179 hypothetical protein 148 75 Op 2 . - CDS 147327 - 147824 571 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - Prom 147865 - 147924 6.4 149 76 Op 1 . - CDS 147945 - 149396 825 ## EF3181 hypothetical protein 150 76 Op 2 . - CDS 149380 - 149865 485 ## EF3182 hypothetical protein - Prom 149900 - 149959 2.1 - Term 149893 - 149938 11.8 151 77 Tu 1 . - CDS 149967 - 151043 995 ## EF3183 cell wall surface anchor family protein, putative - Prom 151069 - 151128 5.2 - Term 151081 - 151134 9.4 152 78 Op 1 . - CDS 151155 - 151913 1037 ## EF3184 hypothetical protein 153 78 Op 2 . - CDS 151914 - 152714 1037 ## EF3185 hypothetical protein 154 78 Op 3 . - CDS 152719 - 153453 1061 ## EF3186 hypothetical protein 155 78 Op 4 . - CDS 153410 - 153799 127 ## EF3187 cell wall surface anchor family protein 156 78 Op 5 . - CDS 153819 - 158669 4804 ## EF3188 hypothetical protein - Prom 158740 - 158799 9.8 - Term 159000 - 159043 12.6 157 79 Tu 1 . - CDS 159045 - 160058 998 ## COG0657 Esterase/lipase - Prom 160082 - 160141 5.9 + Prom 159846 - 159905 5.5 158 80 Op 1 . + CDS 160096 - 160176 56 ## 159 80 Op 2 . + CDS 160224 - 160769 584 ## COG1335 Amidases related to nicotinamidase + Term 160948 - 160974 -1.0 - Term 160935 - 160961 -1.0 160 81 Op 1 23/0.000 - CDS 160966 - 161649 959 ## COG1346 Putative effector of murein hydrolase 161 81 Op 2 2/0.214 - CDS 161646 - 162065 490 ## COG1380 Putative effector of murein hydrolase LrgA - Prom 162096 - 162155 8.0 - Term 162164 - 162212 13.4 162 82 Op 1 9/0.000 - CDS 162217 - 162945 779 ## COG3279 Response regulator of the LytR/AlgR family 163 82 Op 2 . - CDS 162926 - 164695 1605 ## COG3275 Putative regulator of cell autolysis - Prom 164715 - 164774 7.4 - Term 164729 - 164780 9.2 164 83 Op 1 22/0.000 - CDS 164787 - 165605 1038 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen 165 83 Op 2 32/0.000 - CDS 165618 - 166289 762 ## COG2011 ABC-type metal ion transport system, permease component 166 83 Op 3 . - CDS 166286 - 167008 366 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 167173 - 167232 6.7 - Term 167165 - 167234 5.0 167 84 Tu 1 . - CDS 167370 - 167762 256 ## COG1765 Predicted redox protein, regulator of disulfide bond formation - Prom 167831 - 167890 5.7 + Prom 167735 - 167794 5.3 168 85 Tu 1 . + CDS 167969 - 168238 457 ## PROTEIN SUPPORTED gi|29377650|ref|NP_816804.1| 30S ribosomal protein S14 + Term 168282 - 168311 0.4 + Prom 168257 - 168316 2.5 169 86 Op 1 . + CDS 168349 - 168498 247 ## PROTEIN SUPPORTED gi|29377651|ref|NP_816805.1| 50S ribosomal protein L33 170 86 Op 2 . + CDS 168514 - 169488 948 ## COG0523 Putative GTPases (G3E family) 171 86 Op 3 . + CDS 169523 - 169645 115 ## 172 86 Op 4 . + CDS 169666 - 171201 1623 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin + Term 171212 - 171261 10.1 - Term 171199 - 171249 14.1 173 87 Tu 1 . - CDS 171259 - 172233 1097 ## COG0042 tRNA-dihydrouridine synthase - Prom 172303 - 172362 7.6 174 88 Op 1 45/0.000 - CDS 172425 - 173195 774 ## COG0842 ABC-type multidrug transport system, permease component 175 88 Op 2 . - CDS 173188 - 174123 963 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein - Prom 174155 - 174214 3.2 176 89 Tu 1 . - CDS 174219 - 174293 56 ## + Prom 174111 - 174170 4.0 177 90 Op 1 9/0.000 + CDS 174380 - 174799 591 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 178 90 Op 2 13/0.000 + CDS 174812 - 175303 743 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 179 90 Op 3 13/0.000 + CDS 175320 - 176135 1050 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 180 90 Op 4 . + CDS 176132 - 176959 862 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 181 90 Op 5 . + CDS 177107 - 179626 2191 ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain + Term 179679 - 179723 13.1 - Term 179663 - 179710 2.3 182 91 Tu 1 . - CDS 179773 - 180333 385 ## gi|229547362|ref|ZP_04436087.1| conserved hypothetical protein - Prom 180375 - 180434 4.0 - Term 180418 - 180457 8.1 183 92 Tu 1 . - CDS 180483 - 180593 74 ## - Term 180989 - 181036 1.8 184 93 Op 1 . - CDS 181089 - 183161 1104 ## Acid345_4269 hypothetical protein 185 93 Op 2 . - CDS 183152 - 184060 415 ## SUN_2432 hypothetical protein 186 93 Op 3 . - CDS 184057 - 186690 1577 ## Acid345_4267 endonuclease 187 93 Op 4 . - CDS 186683 - 188134 516 ## Acid345_4266 hypothetical protein 188 93 Op 5 . - CDS 188127 - 189284 513 ## COG0270 Site-specific DNA methylase - Prom 189519 - 189578 9.0 + Prom 190624 - 190683 7.1 189 94 Op 1 5/0.036 + CDS 190709 - 191068 349 ## COG0640 Predicted transcriptional regulators 190 94 Op 2 . + CDS 191065 - 193182 2002 ## COG2217 Cation transport ATPase + Term 193196 - 193265 19.1 - Term 193322 - 193359 1.7 191 95 Tu 1 . - CDS 193403 - 194215 683 ## COG1396 Predicted transcriptional regulators - Prom 194242 - 194301 8.6 + Prom 194260 - 194319 8.3 192 96 Op 1 . + CDS 194377 - 195633 936 ## COG2946 Putative phage replication protein RstA 193 96 Op 2 . + CDS 195723 - 195920 254 ## LACR_2581 hypothetical protein + Term 195956 - 195985 0.1 + Prom 195928 - 195987 2.8 194 97 Tu 1 . + CDS 196026 - 197072 737 ## COG0582 Integrase + Term 197137 - 197190 -0.5 - Term 197009 - 197041 4.0 195 98 Op 1 59/0.000 - CDS 197132 - 197524 653 ## PROTEIN SUPPORTED gi|29377675|ref|NP_816829.1| 30S ribosomal protein S9 196 98 Op 2 . - CDS 197538 - 198083 930 ## PROTEIN SUPPORTED gi|227517177|ref|ZP_03947226.1| ribosomal protein L13 - Prom 198115 - 198174 4.3 - Term 198149 - 198184 4.0 197 99 Tu 1 . - CDS 198203 - 198670 580 ## COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) - Prom 198722 - 198781 5.9 198 100 Op 1 . - CDS 198798 - 199517 641 ## EF3234 putative lipoprotein 199 100 Op 2 . - CDS 199601 - 201121 1419 ## COG1070 Sugar (pentulose and hexulose) kinases - Prom 201142 - 201201 7.4 200 101 Tu 1 . - CDS 201606 - 201974 167 ## - Prom 202014 - 202073 7.3 - Term 202019 - 202071 12.1 201 102 Op 1 58/0.000 - CDS 202076 - 205729 4620 ## COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit 202 102 Op 2 . - CDS 205896 - 209510 849 ## PROTEIN SUPPORTED gi|163796927|ref|ZP_02190884.1| 30S ribosomal protein S12 - Prom 209570 - 209629 9.8 203 103 Op 1 . - CDS 209881 - 210222 304 ## COG2337 Growth inhibitor 204 103 Op 2 . - CDS 210222 - 210452 305 ## gi|307288305|ref|ZP_07568301.1| toxin-antitoxin system, antitoxin component, AbrB domain protein - Prom 210522 - 210581 4.6 - Term 210817 - 210850 3.1 205 104 Tu 1 . - CDS 210858 - 211073 313 ## COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain - Prom 211093 - 211152 4.6 + Prom 210904 - 210963 6.6 206 105 Tu 1 . + CDS 211212 - 212204 1045 ## COG0340 Biotin-(acetyl-CoA carboxylase) ligase + Term 212229 - 212273 13.9 - Term 212284 - 212317 -0.9 207 106 Tu 1 . - CDS 212468 - 213106 598 ## COG3397 Uncharacterized protein conserved in bacteria - Prom 213238 - 213297 7.5 + Prom 213714 - 213773 2.0 208 107 Tu 1 . + CDS 213793 - 215409 1364 ## COG1316 Transcriptional regulator + Term 215414 - 215463 5.1 + Prom 215572 - 215631 9.4 209 108 Tu 1 . + CDS 215681 - 215824 185 ## EF3247 hypothetical protein + Term 215896 - 215933 6.4 + Prom 216206 - 216265 10.6 210 109 Tu 1 . + CDS 216416 - 216520 122 ## + Term 216596 - 216634 5.0 - Term 216654 - 216711 14.7 211 110 Op 1 . - CDS 216715 - 220590 3238 ## EF3075 hypothetical protein 212 110 Op 2 . - CDS 220571 - 220939 322 ## EF3076 cell wall surface anchor family protein - Term 221202 - 221250 11.0 213 111 Op 1 1/0.321 - CDS 221326 - 222273 872 ## COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase 214 111 Op 2 1/0.321 - CDS 222287 - 223354 1299 ## COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis - Prom 223396 - 223455 6.2 - Term 223492 - 223546 9.4 215 112 Tu 1 . - CDS 223610 - 224539 1115 ## COG4939 Major membrane immunogen, membrane-anchored lipoprotein - Prom 224594 - 224653 6.3 + Prom 224601 - 224660 6.3 216 113 Tu 1 . + CDS 224817 - 226763 2135 ## COG1252 NADH dehydrogenase, FAD-containing subunit + Term 226838 - 226889 12.2 + Prom 227204 - 227263 5.8 217 114 Op 1 3/0.071 + CDS 227292 - 227714 474 ## COG5341 Uncharacterized protein conserved in bacteria 218 114 Op 2 2/0.214 + CDS 227726 - 228283 575 ## COG4769 Predicted membrane protein 219 114 Op 3 . + CDS 228321 - 229307 1046 ## COG0142 Geranylgeranyl pyrophosphate synthase + Term 229312 - 229355 9.9 220 115 Tu 1 . + CDS 229374 - 229622 298 ## PROTEIN SUPPORTED gi|229547905|ref|ZP_04436630.1| acetyltransferase including N-acetylase of ribosomal protein family protein 221 116 Tu 1 . + CDS 230309 - 231121 548 ## COG1680 Beta-lactamase class C and other penicillin binding proteins Predicted protein(s) >gi|307679277|gb|GL456450.1| GENE 1 2 - 3110 2954 1036 aa, chain - ## HITS:1 COG:no KEGG:EF3023 NR:ns ## KEGG: EF3023 # Name: not_defined # Def: polysaccharide lyase family protein 8 # Organism: E.faecalis # Pathway: not_defined # 1 1036 1 1036 1372 1987 100.0 0 MIKKIIVVVAFMLTGFSLTAMSASAEEITDLFLQKEVTYSGVEGGKIGENWKYPQFVGEK AVDGDETTRWSADKQDEQWLIVDLGEVKNIGELVLQLHAESPVYEILVSTDGESYQSIFK EENGKGGQPTKKYIDGNNVQARFVKYQQMKMWQHTNKQFYSSSIISFEAYEKKRLPEAIK LLTENLTISEKRKQQLAFEVSPAGVDITEDQIEWSSSDPTIVTVDQTGNLTAVKSGEAKV TVKIKGTEISDTIPVTVVAENKQYAEMRAKWKMRLLGTTQYDNDADVQQYRAQIATESLA LWQTLNQAADREYLWERKPSDTVSADYTTQFTNIKKLALGYYEPSSELFEKPEVYDAIVK GIEFMIDTKKYNGTYYTGNWWDWQIGSAQPLTDTLILLHDDLLNTDAEKLNKFTAPLMLY AKDPNIQWPIYRATGANLTDISITVLGTGLLLEDNQRLVQVQEAVPSVLKSVSSGDGLYP DGSLIQHGYFPYNGSYGNELLKGFGRIQTILQGSDWEMNDPNISNLFNVVDKGYLQLMVN GKMPSMVSGRSISRAPETNPFTTEFESGKETIANLTLIAKFAPENLRNDIYTSIQTWLQQ SGSYYHFFKKPRDFEALIDLKNVVNSASPAQATPMQSLNVYGSMDRVLQKNNEYAVGISM YSQRVGNYEFGNTENKKGWHTADGMLYLYNQDFAQFDEGYWATIDPYRLPGTTVDTRELA NGAYTGKRSPQSWVGGSNNGQVASIGMFLDKSNEGMNLVAKKSWFLLDGQIINLGSGITG TTDASIETILDNRMIHPQEVKLNQGSDKDNSWISLSAANPLNNIGYVFPNSMNTLDVQIE ERSGRYGDINEYFVNDKTYTNTFAKISKNYGKTVENGTYEYLTVVGKTNEEIAALSKNKG YTVLENTANLQAIEAGNYVMMNTWNNDQEIAGLYAYDPMSVISEKIDNGVYRLTLANPLQ NNASVSIEFDKGILEVVAADPEISVDQNIITLNSAGLNGSSRSIIVKTTPEVTKEALEKL IQEQKEHQEKDYTASS >gi|307679277|gb|GL456450.1| GENE 2 3180 - 3269 154 29 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKSLSEVITLGCLFMPNFYIEYLVEEEVD >gi|307679277|gb|GL456450.1| GENE 3 3427 - 3516 73 29 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVIPLVFSKKLSNCCASETGSAPIIIILK >gi|307679277|gb|GL456450.1| GENE 4 3694 - 4173 500 159 aa, chain - ## HITS:1 COG:lin0321 KEGG:ns NR:ns ## COG: lin0321 COG1576 # Protein_GI_number: 16799398 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 159 1 159 159 219 71.0 2e-57 MKIKLVTVGKLKEKYLIQGINEYLKRLNSYAKMEIIEVPDEKAPEKLSDAEMLQVKEKEG QRILGKINDNEYVFVLAINGKQLSSEEFSKEIEQLGISGKSNLTFVIGGSLGLSDSVLQR SNQQISFGRLTYPHQLMRLVLVEQIYRGFRIMKGEPYHK >gi|307679277|gb|GL456450.1| GENE 5 4574 - 5872 1499 432 aa, chain + ## HITS:1 COG:SPy2216 KEGG:ns NR:ns ## COG: SPy2216 COG0265 # Protein_GI_number: 15675945 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Streptococcus pyogenes M1 GAS # 53 425 35 405 407 325 55.0 1e-88 MQRKDVTPNSDKKSLLQKFGIGLAGGLLGGALILGGAYSGIIPTPNGGNNAATTTSTNHG DTKVSNVSYNVSSDVTKAVKKVQNSVVSVINMQSASNNSSADDPFGGLFGGNEGTQDSSG NNGNDLEAASEGSGVIYKKDGKTAYVVTNNHVVDKAQGLEVVLSDGTKVKGELVGTDAYT DLAVIKISSDKVDQVAEFGNSSKITVGEPAIAIGSPLGSDYANSVTQGIISSVNRNITNK NESGETININAIQTDAAINPGNSGGPLINIEGQVIGINSVKIVQSTSQVSVEGMGFAIPS NDVVNIINQLEKDGKVTRPALGITMSDLTGISSQQQEQILKIPTSVKTGVVVRGVEAATP AEKAGLEKYDVITKVDGQDVSSTTDLQSALYKKKVGDKMEVTYYRGSKEMKATIDLTIDK SALTQQNNRSNQ >gi|307679277|gb|GL456450.1| GENE 6 5969 - 6589 847 206 aa, chain - ## HITS:1 COG:SP1910 KEGG:ns NR:ns ## COG: SP1910 COG0073 # Protein_GI_number: 15901735 # Func_class: R General function prediction only # Function: EMAP domain # Organism: Streptococcus pneumoniae TIGR4 # 1 202 1 200 208 205 54.0 4e-53 MIFAYNKEHVGDVLLVIVADDQGAENQVKRVGDVARVSLVEAPETVVAWNIFNASALLGD INGTGQVTLTDEQIEKVNTAIKDAGFSETLEKDDTPKIVVGFVKSCKKHPDSDHLSITQT EVDNGEILQIVCGAPNIKAGQKVVVAKPGAMMPDGLMIWPGVLRGEESFGMICSAKELRL PNAPAKKGILELPFDAEVGSAFAVGE >gi|307679277|gb|GL456450.1| GENE 7 6693 - 7517 1017 274 aa, chain - ## HITS:1 COG:STM4538 KEGG:ns NR:ns ## COG: STM4538 COG3716 # Protein_GI_number: 16767782 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Salmonella typhimurium LT2 # 8 273 12 277 278 256 46.0 2e-68 MTMNSKNTKSVITKKDFWSVFFRSLTLDASWNYERMQNLAYAYAMAPIIRRLYKNNEEKK AALERHLEFMSVTPHISTLLLGISGAMEEENAKNHEFNSASINAVKTSLMGPMSGIGDSF FWGTLKVIATGVAISLSKQGNIFGPIAFLLIINIPHFALRYICLDKGFKLGAKFFSDVED SGVIEKVTTAASILGLMVIGGMTASNVVFELTAKVGSGKIATPLQEYIDQIMLGFFPALF FLVIYWLLGKKVKTTTLLVGVILLSIFLAALGIA >gi|307679277|gb|GL456450.1| GENE 8 7501 - 8271 989 256 aa, chain - ## HITS:1 COG:STM4537 KEGG:ns NR:ns ## COG: STM4537 COG3715 # Protein_GI_number: 16767781 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Salmonella typhimurium LT2 # 6 241 2 237 259 190 45.0 3e-48 MEVTFIKVLLMFLIAFFAYMHSWFGSTMWNRPIVVAPLVGLALGDLDTGIKLGATLELVF MGAFPVGASNPPDFVSGTIIATAYVIMSGQSISSAVVLAVPIATLVLLIDNLQMTFLLTG ASHLADKEAKRGNIQGVERIQLIAGVGNKVLLALIVALGFYLGVPFIEKVLSYVPDFITH GLDIAAGIIPAIGFAMLARMMVTKKMIPFLLLGFLFAAYLKISVVGIALFGIVIVLLYMN MSDGQTREAVVDDNEF >gi|307679277|gb|GL456450.1| GENE 9 8293 - 8766 562 157 aa, chain - ## HITS:1 COG:STM4536 KEGG:ns NR:ns ## COG: STM4536 COG3444 # Protein_GI_number: 16767780 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Salmonella typhimurium LT2 # 1 149 1 149 153 168 55.0 3e-42 MIKMTRVDHRLIHGQVGFTWTKFLEADCILIASNTLVEDPLRMSAMKMAKPSGVKLVMKT IDDSIKALNSGVTDKYKLFILCESVADMYQLVKEVPTIKEVNLGGMKNGETRKQISKAVH LSETDIAQIKELTNEGIELTVQLVPDDQKVAINKLLN >gi|307679277|gb|GL456450.1| GENE 10 8769 - 9512 919 247 aa, chain - ## HITS:1 COG:PAB1665 KEGG:ns NR:ns ## COG: PAB1665 COG0434 # Protein_GI_number: 14521266 # Func_class: R General function prediction only # Function: Predicted TIM-barrel enzyme # Organism: Pyrococcus abyssi # 15 247 6 259 259 86 27.0 5e-17 MKKKADFLELFAVEKPIIGVIHLKGKTDQEIQERAKKEIQIYSEHGVDAILMENYYGDYV QLEKALQYVTSLDLPIPIGVNVLNVDPLGFHLANKYHLQFLQIDSVVGHVKPRDEASLQA FFDLYRAKTTAKLIGGVRFKYQPMLSEKSVEEDLKIAQQRCDAIAVTENATGEETSLEKI KLFRKQLPEFPLIVAAGLNDKNVKEQLAICDAAIVGSNFKDTRKDTGDIYAPYVDSFMKI VKELRGE >gi|307679277|gb|GL456450.1| GENE 11 9524 - 9934 532 136 aa, chain - ## HITS:1 COG:STM4535 KEGG:ns NR:ns ## COG: STM4535 COG2893 # Protein_GI_number: 16767779 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Salmonella typhimurium LT2 # 1 124 1 124 140 57 32.0 8e-09 MRRFYIASHGDFSKGIKHSLEMIAGHSAAAVHTYSLYPGESAVDFFGELKKKAEQAPEDE FILMGDLFGASVVTAMMGLTVLENVIVFSGVNLNLALELMLAGSEKLTDEKIQVIIRNAR QGIQRVHIEEIENDDF >gi|307679277|gb|GL456450.1| GENE 12 9949 - 10680 833 243 aa, chain - ## HITS:1 COG:CAC3502 KEGG:ns NR:ns ## COG: CAC3502 COG2188 # Protein_GI_number: 15896739 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Clostridium acetobutylicum # 3 227 2 226 237 121 33.0 1e-27 MDKLESNKKAPLYQQLYDAILNKVRSGEYQVGEKIPSEEQLMTIYGVSRVTVRNAIKQLV DENILIKRHGKGTFVSMPSYVESMTAGGSFTESGLKMNRKPTTKIISICLKKATGHVAEA LGVEKATEVIVIERLRSLDNMPAIFEIDYFRKEDQFMLDLELTDTSLLDILRQYRGVIAS YFDNIIEIALADEKLAEALAISEEEALVKINQTVVDNDNQILYFNEQYIRSESYKVAIRS YNK >gi|307679277|gb|GL456450.1| GENE 13 10784 - 11239 687 151 aa, chain - ## HITS:1 COG:SA1532 KEGG:ns NR:ns ## COG: SA1532 COG0589 # Protein_GI_number: 15927287 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Staphylococcus aureus N315 # 6 150 4 146 166 125 44.0 2e-29 MEEQMYKNILVGVDGSDQANLAYERAIEVARRNGSRVIVANILENQVYTMMGYSTLNDQL IDQETAAAEELMADCKKYAESVDFHNVETVTMFGSPKEVMSHELPEKYNVDLIMVGQSGL NAVERVVMGSVSSYIIRQAPCDVLIVHSEEK >gi|307679277|gb|GL456450.1| GENE 14 11387 - 11701 527 104 aa, chain - ## HITS:1 COG:SP1911 KEGG:ns NR:ns ## COG: SP1911 COG0526 # Protein_GI_number: 15901736 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Streptococcus pneumoniae TIGR4 # 1 103 1 104 105 133 58.0 8e-32 MIYPNSLEELATYVEKGKNVFFFTADWCGDCRFIKPVMPEIEEAFPAFQFIEVDRDQFID VAAEWNIFGIPSFVVIENGQELGRLANKDRKTKEEISAFLTSLG >gi|307679277|gb|GL456450.1| GENE 15 11713 - 12789 1232 358 aa, chain - ## HITS:1 COG:SPy0115 KEGG:ns NR:ns ## COG: SPy0115 COG1363 # Protein_GI_number: 15674335 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Streptococcus pyogenes M1 GAS # 6 354 5 352 355 417 56.0 1e-116 MEEKTFQRIKELTELQGTSGFEDDIRAYMKEHITPLVDDVQYDGLGGIFGIKRSKVEAAP RVMVAAHMDEVGFMLTQINDNGLFQVVPLGGWNPYVVSAQRFTLKTSKGNYPCISSSIPP HLLRGTSGQKQLEVSDVLFDAGFSSKEEAESFGVRPGDSIVPQTETIKTANGKNIISKSW DNRYGCTLVLDALETLQNEELGHTLIAGANVQEEVGLRGSKPSVHKFNPDIFFAVDCSAA DDIHTKKGTYGHLGEGTLLRIFDPGLITLPRLREYLLDTAATHNIPYQYFVSKGGTDAGA AHTTNNGVPSTVIGVCGRYIHTHQTMFSIADYEAAREMLLQALRGLDKSTVNTIVYGK >gi|307679277|gb|GL456450.1| GENE 16 13096 - 13437 520 113 aa, chain + ## HITS:1 COG:lin1653 KEGG:ns NR:ns ## COG: lin1653 COG5584 # Protein_GI_number: 16800721 # Func_class: S Function unknown # Function: Predicted small secreted protein # Organism: Listeria innocua # 30 108 19 100 103 86 56.0 1e-17 MNEENELTYFKGGLALGVGLGLVGGIASTLFYHKKKTISADLVLENVKAAFLKEGPIEGS WIEFEKKPLRKFAIHSKTYTGGICRIEDDGIVQYEFTADAYTGTIIDIQRLKD >gi|307679277|gb|GL456450.1| GENE 17 13443 - 13553 64 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLQKHLFAFVTIFFSSHLFFVKGMFILCQKNQINDE >gi|307679277|gb|GL456450.1| GENE 18 13756 - 15411 1643 551 aa, chain + ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 20 549 22 556 559 413 42.0 1e-115 MKKSVLFTSLLVLSSLALAACGGGSDDKGASNGGSGNQVYTMVESQEMPSADPSLATDEV SFTTLNNVYEGIYRLDKDNKPAPAGAAEKATVSEDGLVYKVKLREESKWSDGKPVTAADY VYGWQRTVDPATASEYAYMFEPVKNAEKISKGELPKEELGIKAINDHELEITLETATPYF DDLLAFPSFLPQRQDIVERFGKDYTKSSDKAVYNGPFTLTEFDGPGTDTKWSLTKNEEYW DKETVKLDKVAINVVKEAPTALNLYETGEVDDTYLSGELAQQMQNSPDLVQLKAASSFYL EMNQADEKSPLTNANLRRAMSYAIDRDSLAKNILANGSLPSQGFVPVDVAKSPKTGEDFV KEAGSDKLVKYDKKKAVEYWNKAKQELGVSNLTVDLMVDDSEGAKKMGEYLQGSLSDTLE GLKVTVTPVPMAVRLDRTLKGDFQIAVRGWSADYSDPINFLDLLESSTSNNRGRYSNPEY DKFIAASKTTDVNDPEKRWEDLINAEKTVIADMGVVPIYQKAESHLRAPNVKEIIYHPTG AKYDFKWAYKE >gi|307679277|gb|GL456450.1| GENE 19 15478 - 16296 916 272 aa, chain - ## HITS:1 COG:ECs4013 KEGG:ns NR:ns ## COG: ECs4013 COG3716 # Protein_GI_number: 15833267 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Escherichia coli O157:H7 # 3 268 23 288 292 257 47.0 1e-68 MASEETYNDMISEKVITKKELKKIMFRSYLLQSSFNYERMQAGGWTYSLIPGLKKIHRDK EDLALSLENHLQFMNTNPQLVTFMHGVIIAMEESKESPKSIQAIKTALMGPLGGIGDALF YLTVLPIAAAIGSQLSLEGNILGPIVFLLLFNIPYMAAKIGLINLGYKMGVKAISVLSES TKKLSRSATIVGISVVGALIPKSVQLTTTFVFRLKDTKLDLQTQLFDTIMPNLLPLVFTL FCFIMLKKGRTPIALIIFTVIFGLLGSLIGII >gi|307679277|gb|GL456450.1| GENE 20 16286 - 17059 943 257 aa, chain - ## HITS:1 COG:ECs4012 KEGG:ns NR:ns ## COG: ECs4012 COG3715 # Protein_GI_number: 15833266 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Escherichia coli O157:H7 # 2 218 5 221 259 212 54.0 5e-55 MLVQAILVGIWAGIAGVDKLVLQTHIHRPIVTGLIVGLILGDVNTGLITGATLELVWIGA VAIGGAQPPNVVIGGVIGTALAIITKSDPQVTVGLAVPFAVAAQALITLLYTAMSPIMHK FDVYAKKADTRGIERMSSFLPIVLFICYFFVVFLCIFFGADKASSFISILPEWSIHGLSV AGGMMPAVGFAMLLKTMWETSYVPFFIFGFVMAAYLGLDTLAVAGLAVAIALYEFYAQRN NTVTASNNNGGFEEDGI >gi|307679277|gb|GL456450.1| GENE 21 17084 - 18235 1375 383 aa, chain - ## HITS:1 COG:L173068 KEGG:ns NR:ns ## COG: L173068 COG1820 # Protein_GI_number: 15673317 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Lactococcus lactis # 40 382 44 381 382 203 34.0 4e-52 MIIQSKNVWINEQFQPAQVEVSEQRIVAILPYNEKAVDKEYGEKRILPGFIDIHDHGWHG GDANHANHEFIKEWQAYLPEEGITAFLPTTSTTFPKDLEHSFEVIGSFIEEDQGTNGAQI LGIHAEGPMISEEFRGSHNPELLVKPSVETFKKWQELAKGHIKLMTLAPENDVENALTTY CHEHDVVISIGHTAATYEQAMAAVEAGAKSFTHTFNGMEDISHRKPTAVVAALDSEETFA EIIADGVHVDYSLVRVLAKLKGKDYLIAVTDSIWAKGCQPGVYPKPEKGIEMVIDEQNVV RLANGKLAGSTNHLNNMVRNLVEKALLPEVIAINSVTKNPARLLNVNESMGEIKLGLLGN FTIIDEKYEVLETLVNGETVYKK >gi|307679277|gb|GL456450.1| GENE 22 18281 - 18757 606 158 aa, chain - ## HITS:1 COG:agaV KEGG:ns NR:ns ## COG: agaV COG3444 # Protein_GI_number: 16131025 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Escherichia coli K12 # 1 157 13 169 169 157 48.0 6e-39 MPNILLTRIDNRLIHGQVATQWNGSLGANLILVANDAISEDTMRQQLLNMAAPAEVQTRF FSIKKTIEVIHKASERQKIFLLVDNPVDALRLVEGGVPIEKLNIGNMHMEEGKKQVATAV AVNKTDVDAFKKLQELGVKLSIQRVPSTPEESLDALFS >gi|307679277|gb|GL456450.1| GENE 23 18784 - 19221 529 145 aa, chain - ## HITS:1 COG:ECs4014 KEGG:ns NR:ns ## COG: ECs4014 COG2893 # Protein_GI_number: 15833268 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Escherichia coli O157:H7 # 1 100 1 99 144 79 42.0 2e-15 MIGLILTGHGVFSTGMHQSVSMIAGEQANVQAVPFFNDTGLDVLESNIRKAVDSMLETCP AVVILTDLLGGTPFRISMTVASNYQNVEVLAGTNLPMVLEGLALRTISTNVEDFVSMVTD SARDGIVHKKLEQPQATTQEEADGI >gi|307679277|gb|GL456450.1| GENE 24 19368 - 20462 609 364 aa, chain - ## HITS:1 COG:no KEGG:EF3047 NR:ns ## KEGG: EF3047 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 364 1 364 364 602 97.0 1e-171 MSKEQPINLNISDFLKVFAVASVILQTVLSYVLTHSPQTEAMNSIGSFYRMTKYSAPMFI FAIIYNTVLKSQAESYLEFLKEKFYELVLPYGVWSSLYLYAFPSLQQRMPYETPLGFLGK VLSGDGAAHLWYAVMMLQFQLFMPYFIWLATRITKNKKVILPIVFFIIGAHILWCFWYQK MIFPYAETSLWYLIDRSGLSYLIYGIFGVIAAKYQGEIFTFLKKTRVVLFLLFLFIFWQA VQGNLFDGTQMTPNDLPYLDPLQSAYSLLIIGLVFYLGTQGIAKKIRLLPMVKWIATYAY RSYLANVFIFQLVLKLVHPFLTNQPVSLVILVLYMGTFVGSFGLTVVVEHFFKSIFKLGR LVSV >gi|307679277|gb|GL456450.1| GENE 25 20549 - 21337 874 262 aa, chain - ## HITS:1 COG:chbG KEGG:ns NR:ns ## COG: chbG COG3394 # Protein_GI_number: 16129687 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 6 260 5 249 249 143 36.0 3e-34 MSNKKLIINADDFGYTPAVTQGIIEAHKRGVVTSTTALPTSPYFLEAMESARISAPTLAI GVHLTLTLNQAKPILPREMVPSLVDEAGYFWHQSIFEEKVNLEEVYNEWDAQIISFMKSG RRPDHIDSHHNVHGKNEKLLGVALALARKYQLPLRNASRSIETKDYLELYQDVRTPDEML YQFYDKAISTETILQLLDMVVCSEGEVFEINCHPAFIDTILQKQSGYCMPRIREVEILTS QEVKEAIEERGILLANYESLAM >gi|307679277|gb|GL456450.1| GENE 26 21509 - 22261 648 250 aa, chain + ## HITS:1 COG:lin0527 KEGG:ns NR:ns ## COG: lin0527 COG1737 # Protein_GI_number: 16799602 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 248 1 247 250 204 45.0 9e-53 MLFLTYDPQLNPTELEIYKYISHNIEKIPYMTIRELADEIHFSKTAIWRFCQKFECEGYT DFKFKLKNYLSERKKTAQPKSLDETMLIHFLQRSSEELLEGRIVQAAELLAKKEFVLFIG EGTSKVLAEFGEIYFSSIYNLSASVSHLFSHPVSKLSEETAKKVGVIALSVSGETQKVRQ NIDYFIEMGIDVIAITNSEKSTIAQLSTVTIPYYITTEKSSIADVTSQLPALFLIEKLAK TVSTMLNECP >gi|307679277|gb|GL456450.1| GENE 27 22330 - 22881 444 183 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) [Campylobacter concisus 13826] # 1 183 1 182 185 175 46 1e-42 MERCTWATDTTEEMQAYHDDEWGRPVHEEQQLFELLTLESMQAGLSWAIILNKRETLRAA YDAFDYRKIARYDEEKILALLANPGVIRHRLKIQATITNAQVFQEIQAEFGSFDRYLWNF VDQQPIVNHWQHPEEVPASTELSQQISRALKKRGFKFLGATTVYSFLQAAGLVNDHLETC HYK >gi|307679277|gb|GL456450.1| GENE 28 22958 - 23725 710 255 aa, chain - ## HITS:1 COG:no KEGG:EF3051 NR:ns ## KEGG: EF3051 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 255 1 255 255 508 99.0 1e-142 MSKKPSGYQKKVLAVLLVSFGFGGLLAQFSPMKSGGFSSWFDDSYVKASAESSKTKEPAP VKIEKKVKPLSYGQQVNQEIEKKQYDGHLDLPLELQTDAKWKDTAYGFGNVDKPNTIEIN GCAIVSLAMVGSYMDHQEVTPLDVLAWAKNDFFMEGQGTAWSIFSAYAEMKGYNCQEIGD IETVAAFLKEGHPVIISVKPGYFTTTGHIMVMSGVDEKGDFWINDPNDSEEKGHSKRTFT AEKVMNEALNFWAFY >gi|307679277|gb|GL456450.1| GENE 29 23951 - 24313 429 120 aa, chain + ## HITS:1 COG:no KEGG:EF3052 NR:ns ## KEGG: EF3052 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 120 1 120 120 180 100.0 2e-44 MDQHKATIKSISKLITLSSQHFFSAFLEDSQDQKNKEKERSALLQELQVAAAQKSLVVLQ LKEVPTAHKFETVIGWIVSKNISDNIVVRLQTDEQQLRMIPVASVMKVSTLANRHQRQIH >gi|307679277|gb|GL456450.1| GENE 30 24433 - 25008 567 191 aa, chain - ## HITS:1 COG:SPy0600 KEGG:ns NR:ns ## COG: SPy0600 COG3859 # Protein_GI_number: 15674683 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 1 190 1 186 187 116 38.0 2e-26 MARKMDLRIWVEGTVVAAMAMALSFLPIEFANSGLDLSLGMVPLVLYSFRRGLLPGVAAG FVWGMLNIILGTAMKNFLSVPQIIFEYPFAFAFGGMGGVFARKIQLYFQANRLKSAIRTI ILGSVVAVFARWFWHFWAGVLVWGMYAPEGMSPYLYSFVLNGTSTVVNCLYVSLVLGLLA KVAPQLFVPKK >gi|307679277|gb|GL456450.1| GENE 31 25171 - 25797 715 208 aa, chain - ## HITS:1 COG:lin0040 KEGG:ns NR:ns ## COG: lin0040 COG3212 # Protein_GI_number: 16799119 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 64 208 60 203 203 89 36.0 5e-18 MKKILYGALTGFALFLVAGCTPKTPTAVSSTNEQKETAISTSETSSSVQQEATTTSEKTS AVAVSLEKVTTAFEKKYPEAKITSLQLDTDFGRYFYEIEGVDQQKEYQVEVNAETGEFTK EKVETLDADEQNGVKMQEEALDLTNIISREQATTLAEKAAKVGQATDWKLEKELGITYWE VKVKEGQQKIEVKIDAHSGKILTTERDD >gi|307679277|gb|GL456450.1| GENE 32 25901 - 26686 713 261 aa, chain - ## HITS:1 COG:no KEGG:EF3055 NR:ns ## KEGG: EF3055 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 261 1 261 261 499 100.0 1e-140 MLDLIYVHIDVTSNAVLSKGITHSDFVRSIVHHPQNLLLLDPSAEAGEYDMHSGLKIIRG EESVNRYFQSLQRRWMTEEIKWIDFSDVTMLKELTPLEISELLYFGHMKNSLHSPFFYKL QNDFVFFEFADQMTRVYYRYIDEFYRIFADKITRVVLEKVNQKKAFFKRNTPVEKLSPEL LKNMKGILQEGVIFCFQQTEVDKEEYRIPIYLVEDSLSKMKNTSYQKEEILATLVYNSEK RIWHIEQENDFGEIFMLAHEG >gi|307679277|gb|GL456450.1| GENE 33 26920 - 27654 702 244 aa, chain + ## HITS:1 COG:L125196 KEGG:ns NR:ns ## COG: L125196 COG3764 # Protein_GI_number: 15673095 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Lactococcus lactis # 4 242 44 287 287 216 45.0 2e-56 MRPKEKKRGKNWLINSLLVLLFIIGLALIFNNQIRSWVVQQNSRSYAVSKLKPADVKKNM ARETTFDFDSVESLSTEAVMKAQFENKNLPVIGAIAIPSVEINLPIFKGLSNVALLTGAG TMKEDQVMGKNNYALASHRTEDGVSLFSPLERTKKDELIYITDLSTVYTYKITSVEKIEP TRVELIDDVPGQNMITLITCGDLQATTRIAVQGTLAATTPIKDANDDMLKAFQLEQKTLA DWVA >gi|307679277|gb|GL456450.1| GENE 34 27702 - 27932 365 76 aa, chain - ## HITS:1 COG:no KEGG:EF3057 NR:ns ## KEGG: EF3057 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 76 16 91 91 109 98.0 3e-23 MNSSYLSYVFELSLYYLLLIMSLPLVYAVTYHLSFSSMYTSEWLMISVFLSPLVLLFAGI RYGFARLKQQERQVMK >gi|307679277|gb|GL456450.1| GENE 35 28021 - 28491 668 156 aa, chain - ## HITS:1 COG:lin0937 KEGG:ns NR:ns ## COG: lin0937 COG0394 # Protein_GI_number: 16800007 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Listeria innocua # 1 150 1 149 152 169 52.0 2e-42 MVTVLFVCLGNICRSPMAEAIFRQKVQQADLESTIQVFSAATSYWEVGSQPHKGTRKILE QQGISYQGMRATQIQPSDFKKYDYIIGMDANNVADLKALAPQEEQWRIHLFMEVVAGKET MDVPDPYYTGDFEETYRLVEAGTSEWLKKIKAQLKD >gi|307679277|gb|GL456450.1| GENE 36 28532 - 29101 498 189 aa, chain - ## HITS:1 COG:lin0482 KEGG:ns NR:ns ## COG: lin0482 COG1309 # Protein_GI_number: 16799557 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 7 185 7 185 186 196 54.0 2e-50 MSGTHDTKQAIASALIELCEQKDFRKISVQDITKKVGLNRQTFYYHFTDKYDLLRWIYRH DALIYLETDICLENWEEQALKLLKAIKEKSHFYYTTVTSDSEVLLNVFSASTNRLFISLF EQVDVENHLTDKDKQFYANFFSYGCSGVLTKWILEEYPQTPLEMATQLFRLAKDTEFMAY HLYEQEANE >gi|307679277|gb|GL456450.1| GENE 37 29279 - 30724 1747 481 aa, chain - ## HITS:1 COG:SP2216_1 KEGG:ns NR:ns ## COG: SP2216_1 COG3883 # Protein_GI_number: 15902020 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 274 1 270 270 93 31.0 7e-19 MKKSVLSALMVCSITLTSVALPSAAFADEYDTKIQQQDQKINALTSQMSDAEAKVAAIEN DMVETAKQIDTLTAKKNKLSSEVSKLYSEISDLNVRIQKREVQMTKQARDVQVNGQSDSI IDAVLDADSVADAIGRVQAVSTMMSANNELLEQQKEDKATVEKKTKNVEKQIAELEAATK ELNDKTESLKTLKIQQEVAKNDLEAQRSEEQGKKDGFIKQKKEAEKRLAEEQARQRAAAK KAEEQAAAQAQAAAQKAAAEQAKATKAANEAAASAAEEKAATPVVKSSTTTESTTTQETT TSSTETESVVTTPAAAPEKEKEVPVTNPTTPEKGNEAKPGNGGVTSGKQAAINAALADVG NSYATGWNQPGECLVSVRRWLAAGGINFGYGGPNSGYVASGATQVSWSNVQPGDVVQYES AYSPDSWIGGVHTVLVTGVSGGSVQIVEANNPGGSGYVSSNSNWSPAPPAGFRAVVWRFP G >gi|307679277|gb|GL456450.1| GENE 38 31029 - 31538 479 169 aa, chain - ## HITS:1 COG:L98132 KEGG:ns NR:ns ## COG: L98132 COG2891 # Protein_GI_number: 15674212 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Lactococcus lactis # 7 169 6 168 175 81 34.0 6e-16 MIRKEYLKYVTPILLFFLMLIDAHLTKSFETWTSNVYFASSHLLLLAFMFAVPNFSKRYL LITSLILGFICDSYYIGIIGIYTVALTISVMLMYTFKEVIQTNLLTGFFGIVIFTTLYEL IAVLIQVAFHLADVSPILFITRVLGPTLLLNMVWYVILSYPLKKLFSVK >gi|307679277|gb|GL456450.1| GENE 39 31535 - 32395 1050 286 aa, chain - ## HITS:1 COG:L98749 KEGG:ns NR:ns ## COG: L98749 COG1792 # Protein_GI_number: 15674213 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Lactococcus lactis # 44 279 44 285 291 165 40.0 1e-40 MKKFNPNKNIIITLILVIILVTIISLTAAQRSEKGKTNVVQGGVNNSVSMVDRVISFPAR VVENGLSSMGNLINTFKENERLKEKIDSYNELAVQNNNYKREIDSLKQELNLNETLANYE KVTANVITRSPDTWQDLLIIDKGTNDGIEAGMAVMAQKGLVGRVIEVNATTAKVELLTSK NVNSNHFPVRVTSANGESFGLLKNYDNKTNALIVSQLTGDATLKEGDVVQTSGLGGNSPA DLAVGTVIKVKPDSFGLDREVYVKPYADVYGISVVTVVKRSAGESE >gi|307679277|gb|GL456450.1| GENE 40 32577 - 34691 1679 704 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|62291006|ref|YP_222799.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 1 str. 9-941] # 11 703 11 701 714 651 49 0.0 MTEKQVFKTTWGGRPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKAAKDVDFFPLTV NYEEKMYAVGKIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVE QDCTPEMAAMFGSSLALAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDIELTVAG TKEAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDAD LKKEIFDAYYNTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFAEHEEEAQLLKEVKQI AEDLEKDVVRELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTL APLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQIIP SEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENYT ILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILEE LTTTIAAPREELSQYAPKIEMIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNVS IASSDAEMIKKAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLAN ERVNNVEDVVKLGDEVLVKVTEIDKQGRVNVSRKALLNEENKEK >gi|307679277|gb|GL456450.1| GENE 41 34878 - 35183 511 101 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227517326|ref|ZP_03947375.1| ribosomal protein S15 [Enterococcus faecalis TX0104] # 1 101 1 101 101 201 99 2e-50 MIRRIIEKEVEQMAISQERKNEIIKEYARHEGDTGSPEVQIAVLTEDINQLNEHARTHKK DHHSYRGLMKKIGHRRNLLAYLRKTDIQRYRELIQRLGLRR >gi|307679277|gb|GL456450.1| GENE 42 35427 - 35990 812 187 aa, chain + ## HITS:1 COG:SP1456 KEGG:ns NR:ns ## COG: SP1456 COG0242 # Protein_GI_number: 15901306 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Streptococcus pneumoniae TIGR4 # 1 187 13 203 203 262 68.0 2e-70 MITMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVG LAAPQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRD VPGYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKENPFALK EGVLVIE >gi|307679277|gb|GL456450.1| GENE 43 36037 - 36813 701 258 aa, chain - ## HITS:1 COG:lin1028 KEGG:ns NR:ns ## COG: lin1028 COG0561 # Protein_GI_number: 16800097 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 4 258 3 256 256 175 36.0 6e-44 MERKLFAFDIDGTLLNSEKKALDSTREALAQLREQGHLVTLATGRSRYMAQEVIWDLDFT NYVLCNGAAAFVDHEQYYQNLLHAEALERLAQDSDQRGLGFACVGLDDIKKSNQHRAEKM EIAMNSFHFHSPAYDEHFYRQNDIYQALAFYDAEDQCTFEEEYPEFRFIRWHQHSVDVVP KDGSKSATLTYLAKRVGIDAKNIIAFGDGENDREMLSHAGIGVAMGNASPSIQKVATMVT DTNNNDGIWKALKEMKAI >gi|307679277|gb|GL456450.1| GENE 44 36823 - 37419 494 198 aa, chain - ## HITS:1 COG:Cgl0917 KEGG:ns NR:ns ## COG: Cgl0917 COG4912 # Protein_GI_number: 19552167 # Func_class: L Replication, recombination and repair # Function: Predicted DNA alkylation repair enzyme # Organism: Corynebacterium glutamicum # 1 191 30 206 208 109 37.0 3e-24 MKHQFVFAGIPAPERQALSKQLLKESHTWPKEKLCQEIEAYYQKTEREYQYVAIDLALQN VRRFSLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTELPTIFALFYGAENFWNRR VALNLQLMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELMKELV LSPLAQREGSKYLAKASE >gi|307679277|gb|GL456450.1| GENE 45 37548 - 38351 740 267 aa, chain - ## HITS:1 COG:lin0602 KEGG:ns NR:ns ## COG: lin0602 COG2116 # Protein_GI_number: 16799677 # Func_class: P Inorganic ion transport and metabolism # Function: Formate/nitrite family of transporters # Organism: Listeria innocua # 5 258 6 259 266 273 67.0 2e-73 MKSGSPLFEQIDKSIDKKVNLFSNSFSRYAVRAMLACLFLTLGTAVAFAIAIKGEGISHG LGKMLYAFMFSWSLVMILYMNAELGTSNMLYMTVGVYRKKVNFSLAAKILFTCILFNLIG GVLFGFLVSLTVPFQDLPKDSFFFTSIAGKLEKTTLQILVEAMFANIVVNTAVLVSMRMK DDAGKVAAIIFIIFIFAFLGFEHVIANFPAFSLAYFASNGAIEAFTAGNVVHNLFWAFIG NFIGGGLIMGLGYAWLDKDNKNLTYFD >gi|307679277|gb|GL456450.1| GENE 46 38675 - 39286 1045 203 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29377528|ref|NP_816682.1| 30S ribosomal protein S4 [Enterococcus faecalis V583] # 1 203 1 203 203 407 100 1e-112 MSRYTGPSWKVSRRLGISLSGTGKELARRPYKPGQHGPNSRGKVSEYGMQLTEKQKLRHM YGMNERQFRTLFIKASKIKEGKHGVNFMVLLEQRLDNVVYRLGLATTRRQARQLVNHGHI TVDGKRVDIPSYHVEVGQVIGVREKSQNISTIKEAVEATVGRPAFVSFDTEKLEGSFTRL PERDELYPEIDEALVVEYYNQKL >gi|307679277|gb|GL456450.1| GENE 47 39446 - 39994 730 182 aa, chain + ## HITS:1 COG:lin0607 KEGG:ns NR:ns ## COG: lin0607 COG1268 # Protein_GI_number: 16799682 # Func_class: R General function prediction only # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 175 1 175 182 181 61.0 5e-46 MNKASLRSLILAAEFAVIIAVLSQFTIPLGIVPLTGQTFAIGLTATVLGKRTGTYAILIY FLLGLIGLPVYAGMSSGFGVLFGPTGGYLIGFIFNGLLTGYILEKTTFNYTWAIIANIAG ALVTLVFGMIWLKYSANLPWPNAFAGGFAPFIIPGIIKAVAAAYVGILIRQRFMKRFLAH LS >gi|307679277|gb|GL456450.1| GENE 48 40056 - 40592 630 178 aa, chain + ## HITS:1 COG:lin1308 KEGG:ns NR:ns ## COG: lin1308 COG0681 # Protein_GI_number: 16800376 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Listeria innocua # 21 167 28 182 188 135 48.0 3e-32 MSSLLKRLVQLVLLVVAVLLIRHYVFSPAAVNGSSMEPTLHNNDRLWVTSIKKPQRFDII AFPSPRNGQRVAKRLIGLPGETVEYRDDTLYINGVSLSEDYLASAKRNVSKNENYTQDFT LETLEATQSLTVPEGMYFVLGDNRPRSDDSRYFGFVKQASVEGVLTFRYYPLDKIGFP >gi|307679277|gb|GL456450.1| GENE 49 40647 - 44531 3314 1294 aa, chain - ## HITS:1 COG:no KEGG:EF3074 NR:ns ## KEGG: EF3074 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 1294 1 1294 1294 2283 97.0 0 MKRINWQRLATIGLCSSLVINAFFGVTAIAETVTSESSPTVANSIKEATPASSARQESTE SSQKTTETSQEKVTQETAKQAETKAPLETPEIKTNTTEQPAENSSENDRQKSISPRWVPN NQVIYPRITLAFTNESGQAFTDENLTLSGMYTKFGYENATSLWRSYAVNYPITSSNAEGG QYRVAVNATVPLPYDFFTDLPANYRMNIYAVEQLKIDNTLKYVDSIVAVPNSTLRMTRYS AQQTTELPQFGNHMTPFVLRTRDSVFSKSSENVFSLNTDGNEFLRILSVAPIGTPVEPVL YGFDGTATYRETLNYVVTRKQVTEKFVDANGVSITPPTGFTQNKKTPMTSNDFTFKQAST LPDTYQADGKTYKFKGWYKGKTKPNTLTTTKAPSYAVTYDGNDDLTVVYEAIQEGKGMSS VQVMNKAIQNPVTLPDRMYRVLFINETGGLTFADRYGFTGELVEVADGKVTPIGPVPTNN NSAVKEITIPGRVFDTERPTPLQYGVRNATFTLPKMYKTVTYQPGPNYTGTAYSIPETYR LSLRSGVKSDIDTTGWRIGLDPTTDPQKFTMSGIYWSSMPTNVRLATLLSATITGKGVEP SVYTLDENARMYLYLENRRVTENFVDTNGTKITAPSGFAQGKKTVITSDSYTFKQSGDLP DTYKVGTKTYQFKGWYKGKNKPDTLTTTKAPSYPVTYNDDDDLTVVYEEVVMKTYNLPAK DVYFGYVDEAGNLLNTAGFSVEAELGESDETESTVLGKIQGTDELMSKLKKLSIPGKSYD FPIDKLKTYGARSVNHTIPKQYKTMSITPLATYTGDKTKYPMTKEIRKNIEAPYTVVSQA DGVEAFKLTNAGTFFRTRRAFWTWDPNNTLYAMGIYSGTVGKNYNLASPEGTIYYYLENR RVTENFVDPSGAKIPPPTGFTQGKQTVIDSDNFTYASTKALPDTYTTGDKSYKFKGWYKG KTKPGTLTTTKTPSYAVTYDDKDDMTAVYEEVQPTAEMTVSRLLEVIPNEASMVWTVRLK NTSEVPLTNVKLAPTAKWAAGISVPTQLAVRIGNTPNKIIPVTAEQWQAGVNLDIEIPVN GEALVTVGTAKITGEPRQLLTAEMTASGNFSAVTASNFVRIQGEDQTITPTPVEEGFIST PTFDFGKITINSSTKQYGLKKAADYYGNGTRNPYLRIKTSQPNWQLTAQLSQLTASADSL PTSTRLLLGSADVIAIENYNQVTELTNKVGVTKALTLTSDGTSTPVILNNQFTGNDVYQL DFDFANVKLEVPANQGKINEKYQGTVTWNLVTGP >gi|307679277|gb|GL456450.1| GENE 50 45026 - 48940 2608 1304 aa, chain - ## HITS:1 COG:no KEGG:EF3075 NR:ns ## KEGG: EF3075 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 173 1304 308 1426 1426 878 55.0 0 MKQTKWQRLATIGLCSSLVINAFSGVTAVAETVTIESSPTAESSAKEETPASSVKEETTK ASTENSQVTTDTSQEEETKEAEKQAETEVSTETPEVKTNTTEQAPANSSESDLQKSISPR WVPNNQVIYPRMTFAFTDETGKAFTDETLTLSGTYFKLTYHVEAKQWRPYADRYPIVSSN VGGGYYRVAVNAAVPLPYNFFTDLSTGYIYKVYAPEQLKINNTLKYVDNIVAPPSSITLT KYTAQQVSETAQFGNYTKDGLLQRDRTFSKNSANIFSLNSVALAPSINDVLKIMQVSSVG TNQPVLFGFDGTTMYRETLNYVVTRKQVTEKFVDTNGLAITPPTGFTQNKKTPMTSNNYT FKQAGTLPDTYQADGKTYKFKGWYKGKTKPNTLTTTKAPSYAVTYDGNDDLNVVYEEVVP RDTWVYPGFYAEFVDEQGKAFTNPLTFSGNYTQFLRKKIVNIFETTGNLYPMIGSKDPSQ SNKYKIETQSRIPISATYDGNVTGDVYDKREYGLHDLTITNELKYVDKIEVMNTSLQAAD YLVGYVGIDPILIDFPNILHPLERAFIKNTNQRFSINAIFGANGSASTIPRLLRIGGKDQ PNQRNVTLMGFDGTTNYKHTMNYKVTRKQVTENFVDTNGTKITPPTGFTQNKKTPMTSNN YTFKQAGTLPDTYTTGGKTYKFKGWYKGKTKPNTLTATKAPSYAVTYNNDDDLTVVYEEI EFFDFPALTYQFGFVDESGKRVDASTIDLTYDNWHGELLSSVDGWKTTNIEKGQVALTKN NLKEIVYPSHSLEIMNGRHSQYSAANLTFKIPKYYENISVYNKNGTFDTAYPFPTIKVNT STTPLSNRPQLFQLKKSNNQSFIFNQTTAAAPADVQVPYNLREIVYDPATSVNKGLYHML DKPIYYYLTNRKVTENFVDTNGTKITPPTGFTQGNQIPMTSNTFKYTAAKALPATYTAGG KTYTFQGWYKGKTKPNTLTTSTTPTYNTTFDGNDDMTAMYKEEVPKASVALTRTTAETVT SGGNVTWRATITNTSQAPLTTATIKKSTAWTTGLAAPPAMIVTPAGGTAKTVPVTATTWT NGVSLGTDIPVGKSATVQFTTKATGTAGQVLRAGITTSGNYSGVSASATVRVKDNDQAIV TPTAEGFISVPTFNFGQVGVAGSTQQHSLKKAADYYGNGTRNPYLRIKKTQANWSLTAQL SQPKSATDSLPTATRLLLGAAPVSSFSNYNQPTELKNAVGTTSTISLNANNTATRIIANQ QFTGSNIYQLDFTFNNVKLEVPANQGVKGQQYQAAVTWNLVTGP >gi|307679277|gb|GL456450.1| GENE 51 48942 - 49289 264 115 aa, chain - ## HITS:1 COG:no KEGG:EF3076 NR:ns ## KEGG: EF3076 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 115 1 115 120 184 94.0 1e-45 MKKKRYLIIACLLFSPSFFINVEASEGGSSSVGIEFYQNPATPAPKDAPPKTDAPAADSK EPAGPPQGDQRSGGSTQTTTTGSKLPSTGSKSQANLSILGLVLIGLVGMVQRKKG >gi|307679277|gb|GL456450.1| GENE 52 49645 - 50256 916 203 aa, chain - ## HITS:1 COG:lin1053 KEGG:ns NR:ns ## COG: lin1053 COG4493 # Protein_GI_number: 16800122 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 4 201 6 203 204 160 41.0 1e-39 MLMFTEKEFAAFEVAGLDERMAVIRAQIQPIFQELDTYFAEQLAPELGTELFVHIAQHRR RTVYPPENTWSALSPNKRGYKMQPHFQLGIWGDYVFMWLSFIDNPKNEKQIAQAFLENQQ LFQALPEDTYVSLDHTVPQITPLPETDLEKALTRFRDVKKGEFEIGRIIPKDSDLWQNPE KARAYMLATYQQLLPLYQLAVAQ >gi|307679277|gb|GL456450.1| GENE 53 50291 - 50848 276 185 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116511539|ref|YP_808755.1| SSU ribosomal protein S5P alanine acetyltransferase [Lactococcus lactis subsp. cremoris SK11] # 1 151 1 145 186 110 40 4e-23 MNYPLIFAENQRIKTERLILRPVTLADAEDMYEYASDEETVRYVFLKNQTIAETRQNIAK FFMGEPLGKYGIEVKETGKMIGTIDLRVNETNTIGELGYVLNRAFWGNGYMPEAATALVE LGFAKMKLMRIFALHDQDNPASGRVMEKIGFTYEGTLPNARISKGKIVTDIYRGMTLETW QNRQK >gi|307679277|gb|GL456450.1| GENE 54 50933 - 52153 1330 406 aa, chain - ## HITS:1 COG:FN0733 KEGG:ns NR:ns ## COG: FN0733 COG2195 # Protein_GI_number: 19704068 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Fusobacterium nucleatum # 4 405 9 410 412 455 55.0 1e-128 MEKLVERFLTYVKVNTRSDANSQTTPTTVGQVVLAKMIETELHELGLADVHYNEQNGFLT ARLPGNQPAAKSIGLIAHLDTADFSAENIRPQVITNYDGQDVLLNQEQGIVLSVAEFPNL KEYQGETLITTDGTTLLGADDKAGIVEILAAVEYFLAHPEVARGDVWLAFGPDEEIGRGA DQFDAPNFPVAFAYTIDSGRVGHFEYETFNAAQAVITIEGTSVHPGTAYGSLVNAIKLGE QLDQSLPQKEVPEQTRGNEGFYLLNKFTGSIEKAELVYIIRDHDQENFQARKQFLEKQVQ RLNALADKPRLTITFQDQYYNMKEIIEKDWTPVELAVQAMESCDIEPIITPFRGGTDGSK ISFMGIPTPNLFTGGENFHGQYEFITVESMVKAVQTIIAIIRLNAN >gi|307679277|gb|GL456450.1| GENE 55 52175 - 53818 1707 547 aa, chain - ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 2 545 4 548 549 382 38.0 1e-106 MKLGKKVVGLIATGFLLAACGGTKEAAEKVDSGNLAAEQKISISSPAPISTLDTTQTTDK NTFTMAQHLFEGLYRFDDDSATVPALAKDVKISDDGRKYHFTLREGIKWSNGEPITAQDF VYSWKKLVTPATIGPNAYLLDSVKNSFEIRNGEKSVDELGISAPNDKEFIVELKQAQPSF LAVVSIAWLAPQSQKFVEAQGKDYALDSEHLLYSGPFTLANWDATSDTWTLKKNPEYYDA DQVKLEEVAVSTIKEDNTGINLYQANELDLVRINGQYVQQYQDDPGYVSHPDVANYFLDF NKKEGTPLANVHLRKAIGQAIDKEALTQSVLNDGSKPLNGLIPSKLYANPETDEDFRAYS GEYLKNDVKKAQAEWTKAQADVGKKVKLSLLAADTDQGKRIAEYVQSQLQENLPGLEITI SSQPSNNVNQSRREKNYELSLSGWIAGSSELDSYFNLYAGESSYNYGNYHNAKYDQLVED ARTINANNPEKQFAEYKEAEDILLNQDAAQVPLYQSASNYLINPKLKGISYHLYGDYFHL RNAYLTE >gi|307679277|gb|GL456450.1| GENE 56 54395 - 55348 1238 317 aa, chain - ## HITS:1 COG:BS_yclQ KEGG:ns NR:ns ## COG: BS_yclQ COG4607 # Protein_GI_number: 16077451 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type enterochelin transport system, periplasmic component # Organism: Bacillus subtilis # 3 317 2 316 317 270 48.0 2e-72 MKKKFLAMMAVSMMGLLMLSACQTNKKTADSATTETTAKTEVTVKDTNGQLTVPKNPQKV VVFDNGSLDTMDALGVGDRVVGAPTKNIPAYLKKYQKVESAGGIKEPDLEKINQLKPDLI IISGRQQDYQEQLKAIAPTIYLAVDAKNPWASTKQNIETLGTIFDKEEVAKEKITGLEKE IADVKKQAEASANNALVVLVNEGQLSAYGKGSRFGLIHDTFGFKAADDKIEASTHGQSVS YEYVLEKNPGILFVVDRTKAIGGDDSKDNVAANELIQKTDAGKNDKVIMLQPDVWYLSGG GLESMHLMIEDVKKGLE >gi|307679277|gb|GL456450.1| GENE 57 55387 - 56142 274 251 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 223 1 226 245 110 29 7e-23 MIQMSDVSKKYGDKFVVSDIDLPISEGKLTAFIGPNGAGKSTLLAMMSRLIPKDTGEIYL DKQEVKTWKQSAFSQKIALLKQANGVQLKLTVRELVNFGRFPYSKGRLKSADHEKVTEAL EQLGLTEMAEEYIDTLSGGQLQRAYIAMILAQDTDYILLDEPLNNLDMNYAVQMMQILKR LVDELGKTILIVLHDINFAASYADEIVAMKGGKLYAHGATEEVIQTSILNDLYEMNIRIC EIEGKRFCLYH >gi|307679277|gb|GL456450.1| GENE 58 56139 - 57104 761 321 aa, chain - ## HITS:1 COG:BS_yclO KEGG:ns NR:ns ## COG: BS_yclO COG4605 # Protein_GI_number: 16077449 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type enterochelin transport system, permease component # Organism: Bacillus subtilis # 12 318 7 313 315 208 41.0 1e-53 MKRPLKKWLSLLLLLAAVVIVSLCYLTYNTYGNWSFALALRGKKLLAFIFVGIAAAFSTI SFQTVTQNHFLTPNILGMDSLYVFVQTVLFFLLGGAQALGQVSLGSFLMNVFLMVFLSTS LSYFLLRKNQSDLFLLLMIGMILGTFFSSISTFLQVIMDPNEYDLLQGKLFASFGNVNSQ YLIFVGVAVLIICGILWRESYRLDVLHLGNHQAQNLGIAVSQFQLVLLCLISSLVGLSTA LVGPITFLGFIVANMSYQFMKTYRHRELFVAGSLIAVFLLVFGQLMVEQVFHLNTPLSVV IQFVGGVYFIWKIIAERKQRT >gi|307679277|gb|GL456450.1| GENE 59 57101 - 58048 889 315 aa, chain - ## HITS:1 COG:BH1025 KEGG:ns NR:ns ## COG: BH1025 COG4606 # Protein_GI_number: 15613588 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type enterochelin transport system, permease component # Organism: Bacillus halodurans # 1 314 1 314 317 277 51.0 2e-74 MKKIGLFVLLLLFSLLSLVIGVKDIALSQLFQLDAQQQFVLFTTRVPRTLSLIIAGSTMS ISGLIMQQLTQNKFVAPSVAGTTDSARLGILVAMLFFPTAPFLYRTAIAFIFALSGTLLF LALIRLLPSKNQVMVPLVGVMFGNILGSIATFFAYQYQLVQNMSAWLQGNFSTVMKGNYE WLFLMIPLWFVIYLFAYHFTVVGMGEAFANSLGVHYQRIQFLGLTLVALASAIVLLMVGN IPFLGVVIPNLVSLRYGDHMKNTLWLTGICGSLFLLICDILARVLIAPYEIPVSVVVGTL GSILFILLLLRGRKQ >gi|307679277|gb|GL456450.1| GENE 60 58045 - 58116 89 23 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVFSYTVTKNENHSQLNKNGVFS >gi|307679277|gb|GL456450.1| GENE 61 58233 - 58685 609 150 aa, chain + ## HITS:1 COG:BS_yueI KEGG:ns NR:ns ## COG: BS_yueI COG5506 # Protein_GI_number: 16080228 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 124 1 122 132 72 32.0 2e-13 MANDDLQQRLDKGMYGTPLVNPEEQHKYMGTFRERCRLSMTVAEMKDAQNQKHLLEELAK HPEVTVLLNGEISSDLQSTYIKLLNQHGATFKIVNNFVENNPDSLGLLLAEKHAVDEPVI DVTEKYPQATETPKEEPTAKKSFWQKLFHS >gi|307679277|gb|GL456450.1| GENE 62 58871 - 58972 131 33 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSIEAALELMISFATLVALLIFGILEATKNDKK >gi|307679277|gb|GL456450.1| GENE 63 59162 - 61432 2790 756 aa, chain - ## HITS:1 COG:PM1048_1 KEGG:ns NR:ns ## COG: PM1048_1 COG2918 # Protein_GI_number: 15602913 # Func_class: H Coenzyme transport and metabolism # Function: Gamma-glutamylcysteine synthetase # Organism: Pasteurella multocida # 21 480 21 481 481 390 47.0 1e-108 MNYRELMQKKNVRPYVLMARFGLEKENQRSTREGLLATTDHPTVFGNRSYHPYIQTDFSE TQLELITPVANSGTEMLRFLDAIHDVARRSIPEDEMLWPLSMPPQLPTKDEEIKIAKLDQ YDAVLYRRYLAKEYGKRKQMVSGIHFNFEYDQALIQQLYDEQSEVTDCKQFKTKVYMKVA RNFLRYRWLITYLFGASPVSEDGYFRVYDDQPQEPIRSIRNSTYGYRNHDNVKVSYASLE RYLEDIHRMVENGLLSEEKEFYAPVRLRGGKQMSDLPKTGIRYIELRNLDLNPFSRLGIV EDTVDFLHYFMLYLLWTDEKEEADEWVKTGDIFNEQVALGHPHETIKLIAEGDRIFSEMI DMLDALGIRKGKEVVGKYYQQLRNPQDTVSGKMWTIIQENSNSELGNIFGNQYQSMAFER PYQLAGFREMELSTQIFLFDAIQKGLEIEILDEQEQFLKLQHGEHIEYVKNANMTSKDNY VVPLIMENKTVTKKILSAAGFHVPGGEEFSSFIEAQEAHLRYANKSFVVKPKSTNYGLGI TIFKEGASLEDFTEALRIAFKEDTAVLIEEFLPGTEYRFFVLDNDVKAIMLRVPANVTGD GKHTVEELVAAKNSDPLRGTNHRAPLELIQLNDLEKLMLKEQGLTIYSVPEKEQIVYLRE NSNVSTGGDSIDMTDVIDDSYKQIAIEAVAALGAKICGIDLIIPDKDVKGTRDSLTYGII EANFNPAMHMHVYPYAGKGRRLTMDVLKLLYPEVVQ >gi|307679277|gb|GL456450.1| GENE 64 61603 - 62109 408 168 aa, chain + ## HITS:1 COG:L125244 KEGG:ns NR:ns ## COG: L125244 COG1335 # Protein_GI_number: 15674036 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Lactococcus lactis # 5 164 18 175 176 134 44.0 6e-32 MKNRALLLIDFQKGIESPSQQLYRLLAVLEKVNQRIAIYRQHHAPIIFVQHEETELPFGS DSWQLFEKLDAQPTDFFIRKTHANAFYQTNLNDLLTEHDIQTLEIAGVQTEFCVDTTIRM AHGLGYTCLMTPKTTSTLDNGHLTAAQIIQHHEAIWAGRFLTFLPSIN >gi|307679277|gb|GL456450.1| GENE 65 62299 - 63195 1123 298 aa, chain + ## HITS:1 COG:SPy2209 KEGG:ns NR:ns ## COG: SPy2209 COG1284 # Protein_GI_number: 15675941 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pyogenes M1 GAS # 8 282 3 277 290 231 49.0 2e-60 MNKFFTAQRLKDTAYVTVGAFILAISINAVLLPNKLVAGGANGISIVINYVFGISPAIVL YAINIPLLVLCFLLLGKEVGVKTIYGSLIYPFFVGITSGMPVLTHNIFLAALFGGIITGA GLGLVFRGNASTGGTAIISQIVNKYFKVSLGIAILFVDGLVILSAMYAFNADIVLFSLIC LFTIGRVVDMIQVGLVRSKNVMIISPKYVAIQERLLRELDKGVTLVPIEGGYRNAKGMLL MTVIREKDFPRLKEAILEIDEEAFLISMSASEVYGKGFSLKKVADSYGVEATNANNLQ >gi|307679277|gb|GL456450.1| GENE 66 63245 - 63643 476 132 aa, chain - ## HITS:1 COG:L151700 KEGG:ns NR:ns ## COG: L151700 COG3607 # Protein_GI_number: 15673301 # Func_class: R General function prediction only # Function: Predicted lactoylglutathione lyase # Organism: Lactococcus lactis # 1 130 1 130 137 161 60.0 3e-40 MGTMVFVNFPVADVQRSTAFYEKLGFKKNEEFSTEEASSMMWDDQFWIMLLNHDFYGKFI QEKQIIDAQTTSGALISFSLESAEAVKQFGETAKANGGNCYRVDMGIPEEQMYGLEVQDL DGNSLEPVWMKM >gi|307679277|gb|GL456450.1| GENE 67 63763 - 64248 685 161 aa, chain - ## HITS:1 COG:SP2081 KEGG:ns NR:ns ## COG: SP2081 COG3542 # Protein_GI_number: 15901897 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 7 155 2 150 153 155 58.0 3e-38 MTEQMWIEKLGLEAHPEGGYFKQTNKSEQLIPTKRGERALHTAILFLLNTESPSHFHRLK ADELWFFHDGQPLTVHCIFPDGTYQAVQLGKDLVQGQQLSFSVPAGTIFGSTVATGFALV SCVVTPGFEFEDFELFTQAELLNDYPQHSEIIQHLAYRELP >gi|307679277|gb|GL456450.1| GENE 68 64408 - 65736 1005 442 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 [Bacillus selenitireducens MLS10] # 127 441 13 326 336 391 62 1e-107 MGFFDKIKKAFSAEKKEEEKQEIIEKTVDETPSDESAPAESKETAAEEAQTTPETTAEEV TETADLTDNAEMEKLAGVEEALEEEPEEILTEETQEVVVEAPEEESSVVTPLAEPTDTQV SEEIEESKEEQVQEKYEKGLEKTRKTFGQRLNELFANFRSVDEDFFEELEETLIGADVGF DTSLKITEALRQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINLQPNGLTVILF VGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAGVEVVRGNAGG DPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREIPDAPHEVLLV VDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPVKLVGLGEGIN DLEPFNANDFAMGLFKGLLKDV >gi|307679277|gb|GL456450.1| GENE 69 65739 - 66566 1116 275 aa, chain - ## HITS:1 COG:L22687 KEGG:ns NR:ns ## COG: L22687 COG0561 # Protein_GI_number: 15672793 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Lactococcus lactis # 2 268 5 269 269 246 50.0 4e-65 MIKLVAIDLDGTLLNSQKEISLRNKQALMAAKQAGVKVVICTGRPLAAIGPYLEELGLQE EGDYSITFNGGLVQKNDTGAIIEKTLMPLEAIHELYQLATTLNMPFDVLSDEVVMQLPSA PNYPSIYSSLNKLLTFESYKLEELTPNRIYNKVVVAIDEAYLNERIKEIPASFYERFEII KTRNNLLEFMPKGITKAYGISLLAKDLGIRAEEIMSLGDEENDLPMIEYAGLGVAMANAI PLVKEAADVVTDTNDQDGVAKAVEKYILTPLEGGQ >gi|307679277|gb|GL456450.1| GENE 70 66591 - 70169 4491 1192 aa, chain - ## HITS:1 COG:lin1918 KEGG:ns NR:ns ## COG: lin1918 COG1196 # Protein_GI_number: 16800984 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Chromosome segregation ATPases # Organism: Listeria innocua # 1 1184 1 1183 1186 873 47.0 0 MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLKYKQRKKKAEQK LFETEDNLSRVQDIIYELEDQLVPLAAQADAAKKYLALKEELTEIDVNLTVTEIQEAKAI WETKTQELTAIEEKLAGASKQVHDLEGKLVRLRSKRNRLDEQIETEQQQLLQVTEALKQA EGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREELQTLETAIAEKTAQRQTLKEAL ALATKDVEKYSKSSKELMEELRSQYVEVMQEQANTANDLKYLERQYQQETAKNQQSLAKH EALEEQMVEALAMKETLEKEQKVAKQGLQEQLEEYTALKATLEAKRERLAQRQNDMYQAM NQVQQAKARQKSLQEIQENYAGFYQGVKAVLRHKNQLTGIVGAVAELIEVPKEYTLAIET ALGGAAQHIVVENEKDGRAGITFLKQQHSGRATFLPLTTIKPRSVSAMVQNRLAGAPGFV GIASELVRYPEQVQTVIQNLLGVTILAADLTSANQLAKLVNYQYRVVSLEGDVMNPGGSM TGGANKRGNQGSLFSQAQELQTITEQMTQLETQLRSVEQEVQALSQEVKTATERAEMLRS AGEQNRLKQQEIDNKLANQTETITRLTKEKRLFEYESRELHQFLTEYQTKKATLTEQQAN LTATKERLDAEMKQVEQEASQMETFKAQAQERLTTVQAEQAVAAEQCAHFARQKQDKQEQ LDELLIRETAIRQQLQQLSSHSSDHQLTEEGLAAQVAQLAEKQTALQTSLQTARSQRQAL QEEVDELDTKLAEENKRQQQYLADKTQIEVLKNRAEMQLDSSLSYLQEEYSLTFEAAYEA YFPIDDLAQAQQTVKRLKQEIERLGPVNLSAIEQFEQVDERHQFLVSQRDDLLNAKEQLF ETMDEMDQEVKERFKEVFEAIRGQFKVVFPNMFGGGRAELVLTNPEDLLNTGIEIEAQPP GKKLQHLSLLSGGERALTAIALLFSIIRVRPVPFCILDEVEAALDEANVARFGHYLSEFE DGTQFIVVTHRKGTMEAADVLYGVTMQESGVSKIVSVRLEEVKEGGAIEKSN >gi|307679277|gb|GL456450.1| GENE 71 70190 - 70882 880 230 aa, chain - ## HITS:1 COG:lin1919 KEGG:ns NR:ns ## COG: lin1919 COG0571 # Protein_GI_number: 16800985 # Func_class: K Transcription # Function: dsRNA-specific ribonuclease # Organism: Listeria innocua # 8 228 6 226 229 257 58.0 1e-68 MDNQLTTELKERYGIVFHDVNLLEQAFTHSSYVNEHRYLKLSDNERLEFLGDAVLELIVS QYLYLKFPELPEGKLTKMRAAIVREDSLAKFAKECHFDNYILLGKGEEASGGRTRASLLC DLFEAFLGALYLDQKVGAAKKFIEDVIFPKIDAGAFSHEMDHKTQLQEVLQRKGDVSIEY RLIKEEGPAHDRTFFTEVYMNGELIGLGQGKSKKLAEQDAAERALKSIPQ >gi|307679277|gb|GL456450.1| GENE 72 71136 - 71654 420 172 aa, chain - ## HITS:1 COG:no KEGG:EF3099 NR:ns ## KEGG: EF3099 # Name: not_defined # Def: transporter accessory protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 172 1 172 172 323 100.0 1e-87 MKKRKVFIIFLVSLIIFVFGYYLAFNQNKYVSYNDETKQFVHTDTSKIMENLVNRQQGIY YFGFPTCPWCLELLPILDKELEKESMNAYAVNTRGDDYTENDDELLQKFYQKYTGDESLS VPFIVAINNKKEVQVHIGTVKNHDATKTKLKRRQKEELSQSLNEMLIFSESE >gi|307679277|gb|GL456450.1| GENE 73 72007 - 72273 295 88 aa, chain - ## HITS:1 COG:no KEGG:EF3102 NR:ns ## KEGG: EF3102 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 88 1 88 88 100 100.0 1e-20 MKKNSKYLGSITVIYLLVLVIETLWELFHTSRTESTKVTTLLGITIDNRISKHEISTTFG LTIKVLVLYLLLLLVVYILTGLFGKKKI >gi|307679277|gb|GL456450.1| GENE 74 72260 - 73618 532 452 aa, chain - ## HITS:1 COG:no KEGG:EF3103 NR:ns ## KEGG: EF3103 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 56 452 1 397 397 565 100.0 1e-159 MKKLNTSKDIILLIELFIDNALRGLLKHSILSKKSTRIVIGVCVFFIYFAYFFYNMSELA RIVPDSEKISHILIEQGRKITFYSYFSNTFVLGIIAYILVDNTVALDKNSLFFVKTLPFR KKDISLSFMLFKFVIMILLYELVMIISTPAIKLVTTVPIEYVIFFIVQHLFYLVVIGVIE FIHCLFTFFLKRRVKQINSLKVIGDSLLMIFATFYFFDFRYGLELFLANQLWSISYMIPI TFFLIVVCLMLISIGLLRLISILENQMSQHSKYIYIPFLNKVIFRYKANWYFISFTTVVM LVIFFQSGLRTMLFILTTVMAFSGVLLLSYGDITADFRKQYDLLRIKIRNEWLSQLLLVI MLAMPLLLLCFWGFGELAQLITALSLSLVAIILGYVFPKSQGSLNETTSLLLLFIVFVLV SLLTNRSFGWLILIVLVLLHLLVIKKVRNEKE >gi|307679277|gb|GL456450.1| GENE 75 73563 - 74288 564 241 aa, chain - ## HITS:1 COG:AF0393 KEGG:ns NR:ns ## COG: AF0393 COG1131 # Protein_GI_number: 11498005 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Archaeoglobus fulgidus # 1 234 1 231 241 97 27.0 2e-20 MIRIENLTKKFDRKVLDNITISLPKNRVSVIVGINGSGKTTLLDCIVGLKDATSGKVFIE SYSNDSEKFKECIFYIPSEFYLPNYMTGKEYLNFVLSRYRCSDIERIDDFLELFDLKFAG TNLIESYSFGMKKKIQIVAAALANTDYILGDEIFNGLDFETTLLTLELFENLSREVGIVI ISHNKLIIERFSENILLMSNGNLTPFLGASENLEKEVISTEKIHEKIKYIKGYHPINRVI Y >gi|307679277|gb|GL456450.1| GENE 76 74355 - 74570 213 71 aa, chain - ## HITS:1 COG:no KEGG:EF3105 NR:ns ## KEGG: EF3105 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 71 1 71 71 130 100.0 2e-29 MPLYMENYLLALQSKYSQEITVKWVWAVVILLSVIGCIGYAVYCSWVGGTFAGSIKIGVP DLVHVTFNCKR >gi|307679277|gb|GL456450.1| GENE 77 74953 - 76734 2368 593 aa, chain - ## HITS:1 COG:BH3636 KEGG:ns NR:ns ## COG: BH3636 COG0747 # Protein_GI_number: 15616198 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Bacillus halodurans # 45 575 64 588 610 487 46.0 1e-137 MNKKRILGAITLASVLVFGLAACGGGNKGGGNKATETEDISKMPIAVKNDKKAIDGGTLD VAVVMDTQFQGLFQREFSQDAYDSTYMDPAAQSLFNNDADFKIVDGGAANLILDEDANTA TIKLRDNLKWSDGKDVTADDVIFSYEVIGHKDYTGIRYDDNFTNIVGMEDYHAGKSPTIS GIEKINDKEVKISYKEVHPGMQQLGGGIWSSALPKHTFEGVSVKEMESSDGVRKNPVTFG PYYMSNIVTGESVEYLPNEYYYGGKPKLDKLVFKSVPSASIVEAMKAKQYDMAFSMPTDT YPTYKDTEGYQILGRPEQAYTYIGFKMGTFDKETNTVKYNPKAKMADKSLRQAMGYAIDN DAVGQKFYNGLRTNATTLIPPVFKSLHDSEAKGYTLDLDKAKKLLDDAGYKDVDGDGIRE DKEGKPLEIKFASMSGGETAQPLADYYVQQWKEIGLKVTYTTGRLIDFQAFYDKLKNDDP EVDIYQAAWSTGSDPSPTGLYGPNSAFNYPRFESEENTKLLDAIDSKASFDEEKRKKAFY DWQEYAIDEAFVIPTLYRNEVLPVNDRVVDFTWAVDTKDNPWATVGVTADSRK >gi|307679277|gb|GL456450.1| GENE 78 76763 - 77686 1082 307 aa, chain - ## HITS:1 COG:BH3637 KEGG:ns NR:ns ## COG: BH3637 COG1173 # Protein_GI_number: 15616199 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus halodurans # 18 307 19 302 302 301 57.0 8e-82 MELTEEKREEVLQESIPPMGFRMIAREFVKEKMAMFSLILLVIILLAVFIGSLVLDQSAV MHVSILDKYAEPGTVTMNGTKFILGADEGGRDVLGQLIIGARNSILIGFAITIITSIIGV GLGIISGYYGGMIDNILMRIVDFIMILPIMLIIIVFVSVIPKYSIWSFIWIMCAFYWVGK ARLFRSKTLSEGRRDYVSASKTMGTSDFKIMFREIMPNLSSLIITNLTINFAANIGIETT LTFLGFGLPQSVPSLGTLIGYASSGDVLVNKQWVWLPASILILVLMLSINYVGQAFKRSA DARQRLG >gi|307679277|gb|GL456450.1| GENE 79 77714 - 78676 1117 320 aa, chain - ## HITS:1 COG:BH3638 KEGG:ns NR:ns ## COG: BH3638 COG0601 # Protein_GI_number: 15616200 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus halodurans # 1 320 1 322 322 348 51.0 5e-96 MWKTILRRLLLMIPQVIILSVLIFLLAKMMPGDPFTGLINPNQDPKVIEAMREAAGLNDP WYEQYFRWIGNALHGDFGHSFIFKLPVSTLIAGRVGNTIALAAVSVIITYLIAIPFGLIA GRYQNSWFDKMVVIYNFFSFAVPLFIFALIMLFIFGYRLDWFPTSGTVTVGLAEGTWPYY LDKLKHLILPGVTQALLGTAVTIQYLRSEVIDVKNMDFVRTARSKGVPTNKIFNRHIFRN AALPIASQLGYEITALIAGSVVIEKIFAFPGIGKLFIDSIIQRDYSVITALVLILGLATL IGTLISDIVMSIVDPRIRIQ >gi|307679277|gb|GL456450.1| GENE 80 78676 - 79620 1037 314 aa, chain - ## HITS:1 COG:L92192 KEGG:ns NR:ns ## COG: L92192 COG4608 # Protein_GI_number: 15673822 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, ATPase component # Organism: Lactococcus lactis # 1 312 1 312 319 415 64.0 1e-116 MTEIIQIKDLKVHYPIRSGFFNRITDHVLAVDGVDFMIEQGKTYGLVGESGSGKSTTGKA IIGLEKITNGEIIYQGQDVTKPRSRKAIGYNKDVQMIFQDSMSSLNPKKRVLDIIAEPIR NFERLSDQEEKKKVKSLLDIVGMPEDALYKYPHEFSGGQRQRLGVARAVATSPKLIIADE PVSALDLSVQAQVLNFMKNIQQEYGLSYLFISHDLGVVKHMCDNIAIMYKGRFVEIGTRQ DIYTNPQHIYTKRLLSAIPKIDVANREAHKEERRRVEQEYRENHKDYYDENGRVYNLHAI SPTHQVALKNGGAE >gi|307679277|gb|GL456450.1| GENE 81 79620 - 80627 601 335 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 4 324 8 328 329 236 40 8e-61 MQGNEQLLEVSGLETAFRIKDDYYNAVDDVSFELKKNEILAIVGESGCGKSTLATTIMGL HDPNHTKITGEILYNNLNLTTFNETLYNKVRGNDIGMIFQDPLSALNPLMRIEDQIKESL TYHTKMTAQQKQARAIELLDQVGIPNPERVGKQYPHELSGGMRQRVIIAIAIACKPPILI ADEPTTALDVTIQAQILDLLKDLQEETGSGIILITHDLGVVAEMADRVAVMYAGQFVEVA TAEELFSHPKHPYTRSLLQSIPQENSDEEELHVIEGIVPSLTKLPRKGCRFAPRIPWIDA SEHEENPTLHEVAPNHFVRCTCYKHFHFRDGEGEA >gi|307679277|gb|GL456450.1| GENE 82 80923 - 81162 411 79 aa, chain - ## HITS:1 COG:lin1920 KEGG:ns NR:ns ## COG: lin1920 COG0236 # Protein_GI_number: 16800986 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Listeria innocua # 5 79 3 77 77 60 57.0 6e-10 MTREEVLQKVAKIISNHFDIEADQVTDQLNIKDDLNADSISVMEFVLELEDEFGTEISDE DAEKIETVGAAVDYIVTNS >gi|307679277|gb|GL456450.1| GENE 83 81299 - 82300 1453 333 aa, chain - ## HITS:1 COG:SP0037 KEGG:ns NR:ns ## COG: SP0037 COG0416 # Protein_GI_number: 15899983 # Func_class: I Lipid transport and metabolism # Function: Fatty acid/phospholipid biosynthesis enzyme # Organism: Streptococcus pneumoniae TIGR4 # 2 331 3 330 330 428 70.0 1e-120 MKIAVDAMGGDNAPQAIVEGVMLAKQDFPDIEFQLYGKEAEIKKYITDEKNITIIHTDEK IASDDEPVKAIRRKKTASMVLAAQAVKNGEADAIFSAGNTGALLAAGLFIVGRIKNVERP GLMSTLPVMGEPDKGFDMLDLGANADNKPEHLVQYAVLGSFYAEKVRNVQNPRVGLLNNG TEETKGSELTKKAFELLAADETINFVGNVEARELLNGVADVVVTDGFTGNAVLKSIEGTA MNMMSLLKTAILSEGVKGKMGALLLKNALRGMKDEMDYSKHGGAVLFGLKAPVIKTHGAT GPDAVRYTIRQIHTMLETQVVPQLVEYYEGKAE >gi|307679277|gb|GL456450.1| GENE 84 82403 - 84439 2141 678 aa, chain - ## HITS:1 COG:SPy1785 KEGG:ns NR:ns ## COG: SPy1785 COG1200 # Protein_GI_number: 15675625 # Func_class: L Replication, recombination and repair; K Transcription # Function: RecG-like helicase # Organism: Streptococcus pyogenes M1 GAS # 1 671 1 668 671 757 56.0 0 MDITDLVSVLPGVGPKRAENLQELGIATIEDLLTYYPFRYDDIQEKDLSEIQDQEKVTLK GLVVSEAVVSRYGYKKSRLTFRMMQEHAVINVSFFNQPFLKDKVVLSEEIAVYGKWDAKR KSLNGMKILASKGDNEDFAPIYHVNKKVRQSTLVQLIRTAFEEYGSLVEEILPNDLLEKY RLMPRKEAMWAMHFPSNPEESHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDV DRLKTFTQGLPFELTGAQKKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMT AGFQGALMVPTEILAQQHMESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIV VGTHALIQQDVSFHQLGLVITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITA YGEMDVSIIDEMPAGRIPIETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALD VKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNV PNATVMLIMDADRFGLAQLHQLRGRVGRGSSASYCILVANPKNEMGVERMKIMTETTNGF VLSERDLELRGPGEVFGARQSGVPQFAVGDIVTDFNILEVARQEASALWQVKEWWQYPAY QGLANRVKPQDEAVQFFD >gi|307679277|gb|GL456450.1| GENE 85 84555 - 86231 2188 558 aa, chain - ## HITS:1 COG:SP0443 KEGG:ns NR:ns ## COG: SP0443 COG1461 # Protein_GI_number: 15900360 # Func_class: R General function prediction only # Function: Predicted kinase related to dihydroxyacetone kinase # Organism: Streptococcus pneumoniae TIGR4 # 3 558 1 555 555 645 62.0 0 MNVTEISAGQFQEMVQAGATRLHTNAEYVNSLNVFPVPDGDTGTNMNLSMTSGAKAVADS RSEKVGELAGALSKGLLMGARGNSGVILSQLFRGFSKQIPEVTTLNAKDLAAAFTHGVET AYKAVMKPVEGTILTVSREAARSGERKAKETDDCIEVMTAVVAGAKRALAKTPDLLPVLK EVGVVDSGGQGLLFIYEGFLEALSGEFLPTETYEPSPAEMDEMVNAEHHRGVSGHVATED IKFGYCTEIMVRIGEGPTVDSAFDYETFRNYLNELGDSLLVVNDDEIIKVHVHTEHPGEV MNYGQKFGSLVKIKVDNMRLQHETLVERDAQQEALTEKVRVPFAVIAIAAGEGVQELFRS LGASYIISGGQTMNPSTEDILKAVKEVNAEQVIILPNNKNIFMAADQAAEVADVPVAVVP SKTISQGMTAMLAFNNQQSLEENKASMTEMLDSVVSGQVTTAVRDTTIDDVEIKKDDFLG MIDGKIVVSEADRFNASLDTLNRMIDEDTEIVTIIVGEDGSVEEAEKLIAILVSENDELE TELHEGGQPVYPYLFSAE >gi|307679277|gb|GL456450.1| GENE 86 86314 - 86676 638 120 aa, chain - ## HITS:1 COG:lin1929 KEGG:ns NR:ns ## COG: lin1929 COG1302 # Protein_GI_number: 16800995 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 120 1 120 121 142 64.0 1e-34 MAVKIQTPAGTIEITNDVIATVVGGAATDIYGIVGMASKNQIKDNLNDILRRENYSRGVV VRQEDNGIAVDVYTIVSYGTKISEVSRNVQEKVKYNLETLLGVTANSVNVFVQGVRVLPD >gi|307679277|gb|GL456450.1| GENE 87 86950 - 87138 318 62 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29377572|ref|NP_816726.1| 50S ribosomal protein L28 [Enterococcus faecalis V583] # 1 62 1 62 62 127 100 5e-28 MAKVCYFTGRKTSSGNNRSHAMNSTKRTVKPNLQKVRVLIDGKPKKVWVSTRALKSGKIE RV >gi|307679277|gb|GL456450.1| GENE 88 87241 - 87885 659 214 aa, chain - ## HITS:1 COG:SPy0265 KEGG:ns NR:ns ## COG: SPy0265 COG1564 # Protein_GI_number: 15674445 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine pyrophosphokinase # Organism: Streptococcus pyogenes M1 GAS # 1 213 1 208 210 176 45.0 3e-44 MSRVLLVAGGNPSDWPTFEPATYDYFVGIDRGCLHLLEADLPLQLAVGDFDSLSREEYHF VQETAETLIQAPAEKDDTDTQLALQEALQRFPQAEMTIIGATGGRIDHLLANLWLPFEPR FQGVLRQIRLCDRQNSIQYYAPGSYIVPKEPDKEYLAYCCLTPVENLTLRRSKYLLTNQD VPYPTSYASNEFIEEAAAFSFDTGMIAVIQSKDK >gi|307679277|gb|GL456450.1| GENE 89 87882 - 88535 977 217 aa, chain - ## HITS:1 COG:lin1932 KEGG:ns NR:ns ## COG: lin1932 COG0036 # Protein_GI_number: 16800998 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Listeria innocua # 2 215 3 216 218 272 64.0 3e-73 MKLAPSILSADFANLERDIRLVEELGADYIHVDVMDGQFVPNITLGPNIVSAIRPVTKLP LDVHLMIVQPENYINAFAEAGADIITVHQEATPHIHRALQMIKNAGVKAGVTINPGTPLS MIENVLDLADQVLVMTVNPGFGGQSFIENSLEKIAQLKEWKETKGYTYEIEVDGGIVPET AARCKEAGAEVFVAGSYIYNAENPQERIDALRAVLDK >gi|307679277|gb|GL456450.1| GENE 90 88559 - 89452 848 297 aa, chain - ## HITS:1 COG:lin1933 KEGG:ns NR:ns ## COG: lin1933 COG1162 # Protein_GI_number: 16800999 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Listeria innocua # 4 293 2 291 291 329 53.0 3e-90 MVYLKGQIRKALSGFYYVYADGETYQTRARGNFRNRKITPLVGDEVLFESDNLTDGYVLE ILPRRNELVRPPVANVDLGVVVMSMVSPNFSFNLLDRFLVSLEYKDIEPVIYLTKVDLLD EPQRQEVTEIKQIYEALGYAVIASEDVEATKELERFFPERLTVFMGQSGAGKSTLLNQIS PELQLATAEISQSLGRGKHTTRHVELIPLYDGLVADTPGFSAIDFLEMEAVELPKQFPEF VAAASHCKFRECMHHKEPGCEVKRQVEAGTIATSRYENYLQFLMEIENRRPVYKKKS >gi|307679277|gb|GL456450.1| GENE 91 89701 - 91857 2360 718 aa, chain - ## HITS:1 COG:lin1934_1 KEGG:ns NR:ns ## COG: lin1934_1 COG0515 # Protein_GI_number: 16801000 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Listeria innocua # 4 282 3 281 342 388 70.0 1e-107 MIEIGKKLNGRYHIIGSIGSGGMANVYLAHDLILDRDVAVKVLRFDFQNDQAAIRRFQRE ALAATELVHPNIVSVYDVGEEDGLQYLVMEYVKGMDLKRYIQTHFPIPYSTVVDITQQIL SAVAMAHEHRIIHRDLKPQNILIDEHGTVKITDFGIAIALSETSITQTNTMLGSVHYLSP EQARGSMATNQSDIYAVGIILYEMLTGNVPFDGESAVTIALKHFQEEIPSVKMFDPGIPQ SLENVVRHATAKDPSDRYKTANEMAEDLYTSLSASRLNEPAWEPTALLGETKVLTPIPED IAEPEETTPVEVPEDIADDILAEQPPKKNRKKLWIGLAIAALIALAIGGLAFAMSGGKDV EVPDVTNETKADASQALQSAGLKVDSETKKIPDDKIEEGKVVKTDPEAKSSVKKGRSVTL YISSGTEKIEMADYTNESYESAVEALKKLGFSEDQITTKKEYSDSVSTDNIIKQKPAAGK KVDPKKDKVTLTVSEGPEAVTLPSYAGYSYTNAVNALAQLGISESQITRVDQASDTVEPG LVITQDPAPGGTVTPKNGQVTLYVSKGSDKVTLSDYSGISYDNAVSRLIALGIPESQIKR VDEESDKVEKDTVISQEPASGTAVDPKNDTITLHVSKGSDSVTVPDISGYSPKAAEDSIN NAGLKINEQGLSGSGDGQVVERTSPSAGSKVKKGDSVTVYYSKANDSKSTTSESSTSN >gi|307679277|gb|GL456450.1| GENE 92 91854 - 92603 825 249 aa, chain - ## HITS:1 COG:SPy1626 KEGG:ns NR:ns ## COG: SPy1626 COG0631 # Protein_GI_number: 15675502 # Func_class: T Signal transduction mechanisms # Function: Serine/threonine protein phosphatase # Organism: Streptococcus pyogenes M1 GAS # 1 247 1 246 246 217 46.0 2e-56 MEINVQSDVGRKRNTNQDYANVFENQQHITFAVLADGMGGHQAGDVASQMAVNNLGESWS NASVDSAEKSAQWLIQAIQKENEKIYERGQSKPEYLGMGTTVVGAILLPDSFVLANVGDS RAYLVRDQHMLQLTEDHSLVNELVKSGEITREMAANHPRKNVLTRSLGMPGTVEVDVTNH EWLPNDYLLLCSDGLTNMVSETKILEILETSDPLESKLSQLVAQANEAGGLDNITVLVIH FDEQKEENQ >gi|307679277|gb|GL456450.1| GENE 93 92605 - 93984 1471 459 aa, chain - ## HITS:1 COG:BH2507 KEGG:ns NR:ns ## COG: BH2507 COG0144 # Protein_GI_number: 15615070 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Bacillus halodurans # 11 452 4 448 450 419 50.0 1e-117 MAEKIPKKLKRSVRYVALETIERVDKGGAYSNLLLNEMMTKSELSEKDGRLFTELVYGTI SRKLLLEYYLTPFVKKPQKVDNWVRNLLILSLYQLLYLDKVPDHAVINEAVEIGKRRGNP GIGKFVNGVLRAFQRNGAPSLAAISDPVDRLATEISMPRWLTEKLLAQLGEEETRQLGLS LFEKSHASGRVNTRFISREEALEELQETGIAAKESQLSPYGVVAEKGYLAGSELFINGCL TIQDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKL INENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAPCSGLGLMRRKPDIKYHKTA NDFQNLPKIQLEILESVAPTLKQWGIMVYSTCTITPEENQEVVAAFLAKHPEFEKIEIVA NENVQAVVKEQELVLYPHQYMTDGFFICCMRKVSSNEVK >gi|307679277|gb|GL456450.1| GENE 94 93990 - 94931 1370 313 aa, chain - ## HITS:1 COG:BS_fmt KEGG:ns NR:ns ## COG: BS_fmt COG0223 # Protein_GI_number: 16078636 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Bacillus subtilis # 1 301 1 301 317 339 56.0 3e-93 MTKIVFMGTPAFSVPILESLIEAGYDVQAVVTQPDRPVGRKKVITPTPVKEAALKHNLLV LQPEKISGSPEMEKVIDLAPDLIVTAAFGQFLPEKILKAPKLGAINVHASLLPKYRGGAP VHYSIIEGEKETGVTIMEMVKKMDAGAILSQRAIPITKQDDVGTMFEKLSILGKELLLET LPKLIAGEITPIPQVEEEATFSPNITREQERIDWQKTAEAIDNQVRGMRPWPTAFTTYQG TNWKIWAVTPLTETTTSAPGTIIQRSKKALWIACGEGTVLQIDRLQPAGKGQLTIQEFLN GVGQNVAEKDKVD >gi|307679277|gb|GL456450.1| GENE 95 94924 - 95418 661 164 aa, chain - ## HITS:1 COG:BS_def KEGG:ns NR:ns ## COG: BS_def COG0242 # Protein_GI_number: 16078635 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Bacillus subtilis # 5 159 6 159 160 138 52.0 4e-33 MRYPVVIHPNEHLKMKAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVI EIDEESGRFELINPVIIEKKGTSIDVEGCLSIPETYGTVERADEVTVRYFDREGEEMEVT AYGYLARAFQHEIDHLNGELFIDKMIEKIAPEDLEAYMEEHFDD >gi|307679277|gb|GL456450.1| GENE 96 95445 - 97877 2397 810 aa, chain - ## HITS:1 COG:lin1938 KEGG:ns NR:ns ## COG: lin1938 COG1198 # Protein_GI_number: 16801004 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Listeria innocua # 1 806 1 793 797 867 54.0 0 MQKVAKVIVDVPTMQTDQPFTYLVPENLNEQLAVGMRVEVPFGNGNRHVQGFVLAIEPMA AMVLDETNVQLKELVAVLDLKPVLNTEMLALADYMKEKTFAFKITCLQTMLPSVMRADYQ KYIYLTDELSEELQDQLFYGLEEISWDQAQERGILPQLMALRKQQKVDIRYEVTTRNKVK MVRFIQAAKEFEQLEEIRLGLRKGAKKKEQLLYYLQRLGTEKITAVKEMKELGFSTALLN EAAKNGWLTFIEKEAYRDPFANQTFEKTTALSLNAEQQVAVETILQSVQEQQSQTYLLEG ITGSGKTEVYLQVIAEVLNQGKTAIMLVPEISLTPQMVQRFKSRFGEHVAVMHSGLSQGE KYDEWRKIERGEAEVVVGARSAIFAPIENIGVIIIDEEHEASYKQEETPRYHARDLAIWR SEYHHCPVVLGSATPSLESRARAQKNVYQRLRLTQRANQAATLPTIDVVDMRQEVENGNV SSFSMSLQEKLQERLEKNEQSVLLLNRRGYSSFVMCRDCGYVLPCPNCDISLTLHMDSKT MKCHYCGHEERIPYRCPNCGQDKIRYYGTGTQKVEEELQTLLPDSRILRMDVDTTRRKGA HEKILRTFGEGQADILLGTQMIAKGLDFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQ VSGRAGRAEKPGEVIIQSFNPEHYAIQLAKAQDYEDFYTKEMYIRHRGDYPPYYFTVQIT ASHPEENEAAKQMFQIATKLKQGLSPQAILLGPTPNAIMRVNNRYFYQVIIKYKQEPMLQ PLLKEILTDTQRATARGLKLSIDAEPMNFI >gi|307679277|gb|GL456450.1| GENE 97 98032 - 98334 527 100 aa, chain - ## HITS:1 COG:SPy1630 KEGG:ns NR:ns ## COG: SPy1630 COG1758 # Protein_GI_number: 15675506 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, subunit K/omega # Organism: Streptococcus pyogenes M1 GAS # 2 81 1 79 104 73 61.0 6e-14 MMLKPSIDSLLKEVPSKYSLVILASKRAHELDEGVQPTVESFDSVKSVGRALEEIEAGTV ISDPNPEEKRERLRIEREERKRQREQEQKELENRLRDEKN >gi|307679277|gb|GL456450.1| GENE 98 98339 - 98953 819 204 aa, chain - ## HITS:1 COG:SP1738 KEGG:ns NR:ns ## COG: SP1738 COG0194 # Protein_GI_number: 15901570 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Streptococcus pneumoniae TIGR4 # 1 201 1 201 208 286 72.0 2e-77 MSERGLLIVLSGPSGVGKGTVRKAIFDSEENDFQYSISMTTRKQREGEVDGVDYYFRSRE EFEAMIEAGEMLEYAEYVGNYYGTPLTYVNQTLDEGKDVFLEIEVQGAKQVKDKVPDGVF IFLTPPDLAELKSRIIGRGTDEMSVIEERMAVAREEIEMMALYDYAVVNDEVPLAVQRIK DIIASEHFRVDRVIGKYIKMLEEM >gi|307679277|gb|GL456450.1| GENE 99 99176 - 100657 1520 493 aa, chain + ## HITS:1 COG:SA0598 KEGG:ns NR:ns ## COG: SA0598 COG1686 # Protein_GI_number: 15926319 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Staphylococcus aureus N315 # 33 415 20 400 431 229 37.0 1e-59 MNKKGLRNIARIKPFTLFLLGLVVSCGAFFAQPTVTHAEEDITAIAKKMGTTLKADGIPK AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDI SKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAE LGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITN KPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLI EVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYGV IPKGSQPTFKLVSGQVQVDTPLTLLNSTVQAPKVAYQEVKPKQTTAEAAEESNEHSGDTT VAEPNHFIPKSIATSVLVLFGLIFSVITRQLQKRLERQKKHGKESSKTASMRTIFLSAAV LSFLCAVGLFLLF >gi|307679277|gb|GL456450.1| GENE 100 100701 - 101006 437 101 aa, chain - ## HITS:1 COG:no KEGG:EF3130 NR:ns ## KEGG: EF3130 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 101 1 101 101 181 100.0 9e-45 MTEVKAMTKFYDVTFQELSGRSVVKTEVASDREPFDVWQDACASYSETELNIQINEDTFV TLNRHFVVRIDVKEVDGPVDKQVRRRDELMNVVNTLSNMGL >gi|307679277|gb|GL456450.1| GENE 101 101062 - 101946 1070 294 aa, chain - ## HITS:1 COG:lin1942 KEGG:ns NR:ns ## COG: lin1942 COG1561 # Protein_GI_number: 16801008 # Func_class: S Function unknown # Function: Uncharacterized stress-induced protein # Organism: Listeria innocua # 1 294 2 291 291 181 37.0 2e-45 MKSMTGFGKKTIQNENYQLDIEVKSVNQRFLDIQLRMPKELNAYELVIRQVIKRTLKRGR VEVYVNLQKIGNNQKEVRVQWDLIDQLLTSVDQHLKEKYPEATFDAGDTVNHLLKQNDFV EIVEAEIVDQTFEPFLVQAFEAAIASLDQSRVQEGTQIKQVLLDYVAVLTQSIQELQAFV GVFEQEYRQRFEAKLNEWLGSQVDETRLLTEMAILLEKGDIHEELDRLDIHIDKLHQLLD ETEPVGRELDFLIQEMNREVNTIGSKSSPIEIKNSVVQMKTTLEKIREQIQNVE >gi|307679277|gb|GL456450.1| GENE 102 101963 - 102181 383 72 aa, chain - ## HITS:1 COG:L114363 KEGG:ns NR:ns ## COG: L114363 COG4443 # Protein_GI_number: 15672295 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 1 69 1 69 72 84 62.0 6e-17 MKEEFSYEILEEVAVLSENARGWRKELNLISWNGRPPKFDLREWAPDHEKMGKGITLTNE EFAELSKTIKSM >gi|307679277|gb|GL456450.1| GENE 103 102357 - 102827 553 156 aa, chain - ## HITS:1 COG:lin2984 KEGG:ns NR:ns ## COG: lin2984 COG4405 # Protein_GI_number: 16802042 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 4 149 7 151 153 103 38.0 1e-22 MLKNVEVFWQNFLDKHELDMLMPDVWMFGDGSSEMGNRLGQLVVSGRKTATCSSLDIYKM EEEQLPKAGQYDIILDGQSQPLAIIRTTKVEIMPMNKVSESFAQAEGEGDLTLDYWYEEH ARFFKEELAPYQLQFYPDMLLVCQSFEVVDLYREKE >gi|307679277|gb|GL456450.1| GENE 104 102996 - 103649 771 217 aa, chain - ## HITS:1 COG:VC0285 KEGG:ns NR:ns ## COG: VC0285 COG0800 # Protein_GI_number: 15640313 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-6-phosphogluconate aldolase # Organism: Vibrio cholerae # 12 197 5 190 201 136 39.0 2e-32 METKVEKNQLYQQLATCKLLPLYTATDLRYLPQVESVLVENELPFIEVTFRSQLALPAIK QLAASGNLIVGAGTVRTLKEAQEAVANGAQFIVSPAIVPEVIDFCLANEVPIFPGTATPG EIQRALAYGLRVVKFFPADIYGGLKAIKSLSGPFYDVQFLPTGGIDETNFIEYVEAKEVL AVGGSFILSEKMLQEDEASARQHVQSLLTKIKERQAK >gi|307679277|gb|GL456450.1| GENE 105 103654 - 104727 1316 357 aa, chain - ## HITS:1 COG:TM0069 KEGG:ns NR:ns ## COG: TM0069 COG1312 # Protein_GI_number: 15642844 # Func_class: G Carbohydrate transport and metabolism # Function: D-mannonate dehydratase # Organism: Thermotoga maritima # 1 356 1 358 360 422 55.0 1e-118 MKWGFRWYGAAGDAIPLKHIRQIPGITGVVGTLLNKLPGDVWTVVEIQALKQSVEQEGLA LLGIESVAIHDAIKAGTDQRDHYIDNYRQTLRNLGKCGISLVCYSFKPIFGWAKTDLAYE NEDGSLSLLFDQAVVENMQPEDMYQLIHSQSKGFRLPGWEEERLQQFQELKAMYAGVTEE DLVENLRYFLERVIPVCEEENIKMGIHPDDPPWEIFGLPRITKNLADLKRILSLVDSPAN GITFCTGSLGADPTNDLPTMIREIGHRINFVHFRNVKYLGEHRFEETAHPSVAGSLDMAE LMQALVDVGYEGVIRPDHGRAIWDEKAMPGYGLYDRAMGLTYIQGLYEATKAKQNRK >gi|307679277|gb|GL456450.1| GENE 106 104751 - 105203 705 150 aa, chain - ## HITS:1 COG:CAP0066_1 KEGG:ns NR:ns ## COG: CAP0066_1 COG2893 # Protein_GI_number: 15004770 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Clostridium acetobutylicum # 1 131 1 127 157 71 34.0 6e-13 MLGIVIATHGALSDGAKDAATVIMGATENIETVNLNSGDDVQALGGQIKTAIENVQQGDG VLVMVDLLSASPYNQAVLVINELEPALQKKIFVVSGTNLPMVLEAINHQLLGTPIAEAAQ AIVAQGKESVQAWDISMTSFEDEEDEDDDF >gi|307679277|gb|GL456450.1| GENE 107 105243 - 105785 618 180 aa, chain - ## HITS:1 COG:ECs5001 KEGG:ns NR:ns ## COG: ECs5001 COG3444 # Protein_GI_number: 15834255 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Escherichia coli O157:H7 # 4 153 3 150 164 68 31.0 8e-12 MGVVNLARVDERLIHGQVMVTLSQKSGVNSIFVVDEVVAKDKFMRDLYKSAGSRTGQKTI VITPEKAKFYWDEYQFKEYNCILIAKTVSVIYDLVKHGVPMKELNIGGIAQKNPEKDLLV TKSVYLNKEDAEKLKELHEVYGVEDIYFQATPSAPKTSLKEVLGKFFIKKASRLSHCMTV >gi|307679277|gb|GL456450.1| GENE 108 105807 - 106679 1186 290 aa, chain - ## HITS:1 COG:STM3769 KEGG:ns NR:ns ## COG: STM3769 COG3716 # Protein_GI_number: 16767053 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Salmonella typhimurium LT2 # 20 290 21 286 286 168 36.0 1e-41 MTETTEKVVPKTTNLAPEEITNKDVTKAYLRWHFANEIPHSFERYLAPSLLYAMMPLLKK LYKDDEQLKAAYMRQLLFFNTQLSWGGGVITGLMASMEQERAKEEHEGREIMMQDDLMYN TKAGLMGALAGIGDAIDSGTVQYIFIAIAVPWAQQGSALGAIFPFVAFALYQVLLGVFFA RQSFKMGRNATGLMQSAGIQKAIEMLSVLGLFMMGILAGNYVKVSSTLQFKLSGREFVVQ DILDQIVPGLLPLAVVMGVYWFYTKKGLKVTQALLWLTGILIVLATVGIL >gi|307679277|gb|GL456450.1| GENE 109 106700 - 107536 846 278 aa, chain - ## HITS:1 COG:STM3770 KEGG:ns NR:ns ## COG: STM3770 COG3715 # Protein_GI_number: 16767054 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Salmonella typhimurium LT2 # 34 256 30 249 249 119 33.0 5e-27 METLSVLQSLIMALWVAAIMSRWLGGGATLTLRFSPLMTGLVAGLVMGDVPKAMIVTAAL QMIYMGVFSPGGSMPAEPSIAAAIAVPVALLGNLKPEAAIAVAVPVGLLGSYLYQFRFFI NTFLGKYTDRAVAELNSKKIARSIIWYPTIASFILFVPLVFFALYLGAPVIADIIKALEG TVVIHVLEVVGGGLAAIGIATTVYVIGRKDFLVFFFLAYFMSIVFKSLEITMVTYAIFGV IIALIFVQVQKGKPVAESAGSASATTDFDDDDDYDDGF >gi|307679277|gb|GL456450.1| GENE 110 107549 - 108655 953 368 aa, chain - ## HITS:1 COG:lin1848 KEGG:ns NR:ns ## COG: lin1848 COG0371 # Protein_GI_number: 16800915 # Func_class: C Energy production and conversion # Function: Glycerol dehydrogenase and related enzymes # Organism: Listeria innocua # 4 361 5 358 368 246 37.0 4e-65 MLTDLKVKVGPQFYRYHEGALASVPSLFKEYHAQRILVVHGTVSFEKAQPFLSFLADSEY QFFYHTYTGECSYFGAEQISQQIKEHQIDFLLGVGGGKLADLVGYSAHLNNLNFGLVPTL ASNCAPWTPLAVMYQENGAAEGKTEHFFRQAAFLITDPKLLLDAPRDYFVAGLADTLAKW YESETILRQAHLQGEPFLQLAGATAKLSQEAIMRDSKAALAAMDEGKLTPEFVHLSEIVF AVSGLVGGFGDKYARNAAAHAMHDAMSKFLPKSHDYLHGEKVAYGIFYQLALEKRWAIID ALIPFYQELNLPMSLRQMGLYPEEEAVLDAMVQFIDSKEKVHLIPIEISEERLRQGIEEL EKYIQNQG >gi|307679277|gb|GL456450.1| GENE 111 108670 - 109671 913 333 aa, chain - ## HITS:1 COG:AF0813 KEGG:ns NR:ns ## COG: AF0813 COG0111 # Protein_GI_number: 11498419 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Archaeoglobus fulgidus # 37 325 26 311 527 171 35.0 1e-42 MLKKQKIAIVNSSSFGQIFPEHLTRLEKIGTVKHFTVDSEIGGKELAERLQGYTIIIASV TPFFTKEFFEHKDELLLISRHGIGYNNIDLDAAKQHDTIVSIIPALVERDAVAENNVTNL LAVLRQTVAADASVKADQWEKRANFVGRTLFNKTVGVIGVGNTGSCVVETLRNGFRCDVL AYDPYKSATYLQSYGAKKVDLDTLLASADIICLCANLTEESYHMIGSAEIAKMKDGVYLS NSARGALIDEEAMIAGLESGKIAGLGTDVLEEEPGRKNHPYLAFENVVMTPHTSAYTMEC LQAMGEKCVQDVEDVVQGILPQRAVQEVSRYVS >gi|307679277|gb|GL456450.1| GENE 112 109684 - 110583 897 299 aa, chain - ## HITS:1 COG:BH2674 KEGG:ns NR:ns ## COG: BH2674 COG1023 # Protein_GI_number: 15615237 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted 6-phosphogluconate dehydrogenase # Organism: Bacillus halodurans # 1 298 1 298 298 282 47.0 5e-76 MDIGFIGLGKMGLNMALNVHEQGWPIIGFDVTKEARATAREQGLSVVDSLSELLKALNKR KVIFLSTPAGQITNQLVAELVEQLAPEDIIVDSGNSNFHDSVANAQLAKEKGIYFIDCGT SGGIKGAREGACLMVGGAPEAVKVLTPFFEDLACEQGYLYAGKSGAGHYLKMVHNGIEYV MMQAMGEGFNLLEAAEYDFALEKVADVWNHGSIIEARLMGLAKEVFAENPTLANLEGKVA ANGEAKWMIEEALRLEMPVPTTALSLFTRNESMLANHFSNKVVASLRQGFGGHEVVKSQ >gi|307679277|gb|GL456450.1| GENE 113 110994 - 111881 655 295 aa, chain + ## HITS:1 COG:L54944 KEGG:ns NR:ns ## COG: L54944 COG1737 # Protein_GI_number: 15674168 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 6 288 5 280 282 151 33.0 2e-36 MKNHYLDQRIRIKKPNLSLTEKKISDYFVHSESLLTQMTLESLANEIGVSQSSVYQFVKK IGYSGFQEFKIDIARNSNYQPTFQNVNSVNGADDISPDDDSITIAKKVLQANIYSLSNAT QFLTKELLDNVLALMYSAKTLHFFGQGGSSIVAFDSFHKFIRTNYRCNYIFDYHMQLSFV TKLTSEDCVFIFSHSGKTKESINLARQVKKTNAKMITLTGNSGSELAGLSDEAIIVVTEE GLFRAESLASRISYLTVMDILYTNTMYHNFDQNADSLKKIRDNISTTKTDPHYLS >gi|307679277|gb|GL456450.1| GENE 114 112015 - 112467 78 150 aa, chain - ## HITS:1 COG:no KEGG:EF3145 NR:ns ## KEGG: EF3145 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 150 1 150 150 209 99.0 2e-53 MSGDETKKIMNYEHFFTYKDIIISLLIFFGLLYVIRLESVTKYFSLVIVAIVWFNPILVQ LFDKHTITVSIVVTQMVMHFLFIPLFLLTLLIISITEKEDRLFCLPIIFSVFLVCSQATW LYEYNLLFRVVDIWMILMILFVRIKNINPE >gi|307679277|gb|GL456450.1| GENE 115 113008 - 113724 475 238 aa, chain - ## HITS:1 COG:no KEGG:EF3146 NR:ns ## KEGG: EF3146 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 229 1 229 238 426 100.0 1e-118 MGEAKVTKTFRLTELVASDLSCKDLFDELIAVLEILDVEVVNKKIVYFYKRNVKSKQEKL EVCFTRESILHLIGISYYDINERETSKSRMKSKYAIEFYRDFKRNKLNFSKCWVESTRKV KDKLQVLKYIKSIKTDVVRIGADGQLRTIPMTNTISTPKIGLGIGLYHDHPEFSIPRSCL NLAQDKEAKQHTSFRNACRCTKIWIYERTEQGTWKLEDRQEFFKKIQAEKSKKKRRKK >gi|307679277|gb|GL456450.1| GENE 116 114270 - 114848 331 192 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 5 187 484 668 904 132 40 2e-29 MNLPNKLTVLRIFMIPIFIIIVSVPMDWGTISFGDTTLAVTQLVGAIIFAVASFTDWLDG KIARAQGLVTNFGKFADPLADKMLVMTAFIVLVGQGKVPAWIVAIIVCRELAVTGLRLLL VEHGEVMAAAWPGKVKTATQMVAIILLFINNIPFSALHLPLDQIMLYACLIFTIYSGVDY FAKNKDVFKGSM >gi|307679277|gb|GL456450.1| GENE 117 114947 - 115159 170 70 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|255970662|ref|ZP_05421248.1| ## NR: gi|255970662|ref|ZP_05421248.1| predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] hypothetical protein CUI_2058 [Enterococcus faecalis PC1.1] hypothetical protein HMPREF9498_02637 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9521_02248 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9505_02294 [Enterococcus faecalis TX0109] hypothetical protein HMPREF9504_02348 [Enterococcus faecalis TX0102] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] hypothetical protein CUI_2058 [Enterococcus faecalis PC1.1] hypothetical protein HMPREF9505_02294 [Enterococcus faecalis TX0109] hypothetical protein HMPREF9521_02248 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9498_02637 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9504_02348 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9501_02433 [Enterococcus faecalis TX0027] hypothetical protein HMPREF9502_01777 [Enterococcus faecalis TX0031] hypothetical protein HMPREF9508_00799 [Enterococcus faecalis TX0312] hypothetical protein HMPREF9516_01962 [Enterococcus faecalis TX1302] conserved hypothetical protein [Enterococcus faecalis 62] hypothetical protein OG1RF_12411 [Enterococcus faecalis OG1RF] # 1 70 85 154 154 111 95.0 2e-23 MLKIVNKKFNLITIFSIALLVMGFLIVGLQLYFYFIYGSKFLDSITLIGMIDFGLGYYQL FLKKSKNISE >gi|307679277|gb|GL456450.1| GENE 118 115284 - 116150 1007 288 aa, chain - ## HITS:1 COG:lin1432 KEGG:ns NR:ns ## COG: lin1432 COG1426 # Protein_GI_number: 16800500 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 6 285 4 299 311 98 27.0 1e-20 MASVNIGETLKEARLQKNISIDELQQMTKIQKRYLEIIEQNDFESLPGTFYVRAFIRQYA SAVGLDGNQLVDIYDGKEPAIVEEPKPVYEELEGSRKQLHDEEKQSSWLLRNLPAIAFSL IGLAIAVVVLYIMWQDQKAEPIIQTPATSASVEKPKESSQAPESSTQSSTPPSSSSEPEK KTAVAVVSDANNQVTATVKDANSPINITFKGTEGSCWIGVMVDGNYTYQHTLQAGETETT ALPANAANATLILGASNNVAIQVDGADLTLEKTPVLIRKDVTLGITYR >gi|307679277|gb|GL456450.1| GENE 119 116318 - 117622 1465 434 aa, chain - ## HITS:1 COG:lin1430 KEGG:ns NR:ns ## COG: lin1430 COG0612 # Protein_GI_number: 16800498 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Listeria innocua # 1 429 1 427 428 453 55.0 1e-127 MIKKDYAQIKETLYTETLANGLKVYLLPKNDFQKTYGLFTTDYGSIDNTFVPIGQEEMIE VPDGIAHFLEHKMFEKEDGDVFQKFGQQGASANAFTSFTKTSYLFSTTDQVTQNLETLLD FVQSPYFTKETVEKEKGIIGQEIQMYLDDPNWRLFFGILGNLYPKHPLHIDIAGTVASIA EITAEDLYTCYNTFYHPSNMTLFVVGKMDPEALMAFIRENQAAKEFPAAQPIRRHFPEET AADIVKESAIEMAVTRAKVLVGLKGLDEVPTTGRDLMKYQVTVNLLLQLLFGNTSQNYLA LYDEGLLDDSFSYDFNLDRSFHFADIGGDSEQPEVLAERIEAILLSATTSPELTEENLSL LKKKMIGKYFQSLNSLEYIANQFSQSLFGETTLFDKIEVIESIQLADVRQVAETLIREEG LSRFYMYPKGETEQ >gi|307679277|gb|GL456450.1| GENE 120 117615 - 118883 1235 422 aa, chain - ## HITS:1 COG:L32666 KEGG:ns NR:ns ## COG: L32666 COG0612 # Protein_GI_number: 15673955 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Lactococcus lactis # 11 421 2 408 418 311 44.0 2e-84 MSVQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHETITKRTLLSSLMETNSLNYPNQVKL SERLAELYGASFGIGVSKKGNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQ AGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVYFNQSEDQKIPSFGTVAALAEE TAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLFKQLPFTPREEGKAAIFYNQPIRNVI EERTEREVLAQSKLNLAYNTDIYYGDSYYFALQVFNGIFGGFPHSKLFMNVREKEHLAYY ASSSIDTFRGFMTVQTGIDGKNRNQVLRLISTELENIRLGKISELEIEQTKAMLKNQYIL ALDNAGAWLEKEYLNELMPQTMLTAEEWIARINAVTISEIQEVAKRLELQAIFFLEGETE ND >gi|307679277|gb|GL456450.1| GENE 121 119092 - 119541 761 149 aa, chain + ## HITS:1 COG:mlr5692 KEGG:ns NR:ns ## COG: mlr5692 COG1970 # Protein_GI_number: 13474738 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Large-conductance mechanosensitive channel # Organism: Mesorhizobium loti # 1 133 18 157 157 93 43.0 1e-19 MIKEFKEFIMRGSVLDLAVGVVIGSAFTAIVTQVVEGLITPLISLIFVLTTGKKSADDAL GALVYKVEGVEFNIGSVISALITFLITAFVLFLIVKAANKMKNRGKKEEAAEEEVVPTSE DYLKEIRDLLAAQTPPAETVKTDSTVTEK >gi|307679277|gb|GL456450.1| GENE 122 119582 - 120298 743 238 aa, chain - ## HITS:1 COG:no KEGG:EF3154 NR:ns ## KEGG: EF3154 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 238 1 236 236 206 53.0 8e-52 MKKKIMASLLVGSAVVGASLAPLSAQAVTTGNTPVQVELEGGTLPDQDNNTITGNVDPDP TQPNTDFDLLAIPRRFGFSPMKINDDLSAIEENVGFSRSVMVGDVRGTKEGWHVTGELTK MSNGTDELTGDINFGLKVSYAEYWTHTNSEDVHYYRENDTLNGVNIANDPTAPSAIGTSI KIGGGAAVLMNATVGKGQGTWSGRFENMTLNVTTPMQELKKGAYTGNITWNLVAGPSI >gi|307679277|gb|GL456450.1| GENE 123 120394 - 121101 688 235 aa, chain - ## HITS:1 COG:no KEGG:EF3155 NR:ns ## KEGG: EF3155 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 235 2 232 232 209 52.0 1e-52 MKKKIMASLLVGSAVVGASLAPLSAQAVTTGNTPVQVEFGGGTLPDHGGVVGSVDPDPST SNTDFDLLAIPKSLNFSSMKIGEDLSAIKLLTSERFRSVMVGDLRGTKEGWHVTSEISGL NNGTDQLDGTINIDLTAGYARYMIPEPGSGYYGVQFALNGINIDNDPTAPDFIGTSIKIG GGATILMNATVGKGQGTWAGRIDDMTLNVTTPMQELKKGAYTGNITWNLVAGPSV >gi|307679277|gb|GL456450.1| GENE 124 121497 - 122210 723 237 aa, chain - ## HITS:1 COG:lin1221 KEGG:ns NR:ns ## COG: lin1221 COG2188 # Protein_GI_number: 16800290 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 2 235 5 237 237 228 52.0 9e-60 MNKFHDIFLELEQQIVQGDYQPGDLLPSENQLVETYNVSRETIRKALNLLINAGYIQKKQ GKGSIVLNFKKFNFPISGVTSYKELQQTQHIESHTHVVSLEEIPVERNLAQLTGWTEGAP VWRLVRQREIEGEVDILDIDYLIKEIVPELPKHRAEDSIFDYLENDLGLAISYAQKEITV EPLTEMDKQLIGEVEGNHVVVVRSIMNLEDTRCFGYTESRHRLNKFKFVEFARRRKL >gi|307679277|gb|GL456450.1| GENE 125 122505 - 125216 2195 903 aa, chain + ## HITS:1 COG:L39593 KEGG:ns NR:ns ## COG: L39593 COG1554 # Protein_GI_number: 15672410 # Func_class: G Carbohydrate transport and metabolism # Function: Trehalose and maltose hydrolases (possible phosphorylases) # Organism: Lactococcus lactis # 118 880 6 746 769 518 39.0 1e-146 MTILELTFATNQLTTTFFNHKLEPLHQKTFPFEALTIEETVPELCQLIVAEAAPILGGIV ADFPADFFSPEETLALVPQAVIQAFAEQLNTPLLTAAEQASAPNLLAAFEEKRQYLAWHL DYYGYVPGKNEYAVESLLTVGNGFLGLRGTTPEMTISDDHYPATYIAGLYNTAASEVAGQ VVENEDFVNAPDNQHIALKIGDATDWLTISPDTLQQLHRQLNLKTGLFVAEMILKDADNQ QIKLTTKKIANMAQPNDYHLQYTFEPLNFSAPITLKTVTDGSVYNYNVARYRNLTAKHFQ VTALSAQENKTVIEVCTNQSNLSVRETALITGDFFEKEAIMIQEEAEKIAQVVTVMAHQG TRYTLEKQVFVQASHAEQSWQVPFTPKDSFAAAAQESARAWQTLWQQANITVTGDLMSQK LLRIHSYHLLASASPFSNQAQALDVSITARGLHGEAYRGHIFWDEIFILPFYIQHYPDTA KQLLLYRYHRLEKAKENAAASQYRGAMYPWQSGRDGRETTQKLHLNPLNGHWGEDHSILQ RHVSLAIAYNAWLYWHSTQDHEFMKQYGGEMLLEIAQFWNSAATLDDATGRFFIDKVMGP DEFHEGYPDQAESGLKNNAYTNLMVVWLFEELTNILALFSEEEQAQLFAKTQTSSADLAR MQQIQNSLEIEVNSDGIIAQYEGYFGLKEIDWAAMKEKYGNIYRMDRILKAEGESPDDYK VAKQADTLMLFYNLDKTRVDQILEDLGYQLPADYLEKNLLYYLKRTSHGSTLSRIVHAQL AEMAQFHELSWQLYQEALYSDYRDIQGGTTAEGIHTGVMAATIHVTLATYAGVDTRQNEL SICPNLPEHWQSLAFQFIHQGVTYQFSLTQTSVTITADKDTQLLVQGALIPLTAERPKEV HYQ >gi|307679277|gb|GL456450.1| GENE 126 125231 - 125881 720 216 aa, chain + ## HITS:1 COG:ECs1896 KEGG:ns NR:ns ## COG: ECs1896 COG0637 # Protein_GI_number: 15831150 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Escherichia coli O157:H7 # 4 209 5 208 219 197 51.0 2e-50 MTIGFIFDLDGVITDTAKFHYQAWKALADSLGISIDETFNETLKGISRMDSLDRILAHGH RENAFTPAEKEALAQQKNDHYVQLLEHLTTEDVLPGVVPLLQQAQARHIPCAVASASKNA PLILEKLGVRAYFATIVDPDSLSKGKPDPEIFLAAADSIGVLPQNAIGFEDAQSGIDGLK AAGIYAVGLSASQPLIGADMQVSEMTELSVDALLNR >gi|307679277|gb|GL456450.1| GENE 127 126296 - 126889 276 197 aa, chain + ## HITS:1 COG:no KEGG:EF3160 NR:ns ## KEGG: EF3160 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 51 197 1 147 147 283 100.0 3e-75 MIEKKDFDTIRKAFLIYDTNFNNHMFTYTYQHRKTKKLLEMNVQFEAGNFMHLCGVDYYQ IDKQGSCKFRFKATQFYRALKNNKVSLRGIKPKDDGTTGQKLQVIPLLEMLISPGVRICD GGKFYNLQYEKAIRSGKMIVALTCKENNKKYVPQSLLSLINQPRKSQSKSLTESHEVIKI SKSELNSTSVIEVYDKF >gi|307679277|gb|GL456450.1| GENE 128 127242 - 127367 165 41 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKITERPIVKILIKILMFALCFYAGIKFVDFIFPLVGFKQ >gi|307679277|gb|GL456450.1| GENE 129 127651 - 128184 174 177 aa, chain + ## HITS:1 COG:no KEGG:EF3161 NR:ns ## KEGG: EF3161 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 131 1 131 133 186 100.0 3e-46 MSLIAIKNNEKALIIFDSVLSLIIIIVLSVFYKKIVKKKKQAIFKSLLLAIGMFLFSIIL NLLFSRIPTPENQHYINEVRNVAPVLMALHTRLFSPIIEELLTRGIFMNLFFIKNTSRSV LCKIFFSGLFFGLSHGLLPSISMLFYCGMGWVLASTYYFCNNNLTYPLAIHLLLNNL >gi|307679277|gb|GL456450.1| GENE 130 128279 - 129250 1270 323 aa, chain - ## HITS:1 COG:lin0238 KEGG:ns NR:ns ## COG: lin0238 COG0462 # Protein_GI_number: 16799315 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Listeria innocua # 1 319 1 318 318 464 75.0 1e-130 MSKHYFDPRLKIFSLNSNRPLAEKIADAVGVELGKCSVTQFSDGEIQVNIEESIRGAHVY VIQSTSSPVNDNLMELLIMIDALKRASAKTINVVMPYYGYARQDRKARAREPITAKLVAN MIEKAGATRMLTLDLHAVQIQGFFDIPVDHLMGAPLIADYFIEHGIQGDDVVVVSPDHGG VTRARKLAEFLKAPIAIIDKRRPKANVAEVMNIIGHVEGKTCVLIDDMIDTAGTISLAAN ALKEAGAKDVYASCTHPVLSGPALQRIEDSAIERLVVTDSIYLSDDRKIAKIDEVSVGEL IGDAIKRIHENKPVSPLFETKNK >gi|307679277|gb|GL456450.1| GENE 131 129425 - 129862 534 145 aa, chain - ## HITS:1 COG:SPy1055 KEGG:ns NR:ns ## COG: SPy1055 COG0229 # Protein_GI_number: 15675047 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Conserved domain frequently associated with peptide methionine sulfoxide reductase # Organism: Streptococcus pyogenes M1 GAS # 5 144 3 142 145 197 65.0 7e-51 MTKPTEEELKQTLTDLQYAVTQENATERPFSGEYDDFYQDGIYVDIVSGEPLFSSLDKYD AGCGWPSFTKPIEKRGVKEKADFSHGMHRVEVRSQEADSHLGHVFTDGPLQEGGLRYCIN AAALRFVPVADLEKEGYGEYLSLFK >gi|307679277|gb|GL456450.1| GENE 132 129995 - 130549 577 184 aa, chain - ## HITS:1 COG:BS_maf KEGG:ns NR:ns ## COG: BS_maf COG0424 # Protein_GI_number: 16079857 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Nucleotide-binding protein implicated in inhibition of septum formation # Organism: Bacillus subtilis # 3 184 5 186 189 165 45.0 5e-41 MQIILASQSPRRQELLKRVVPTFTITPADIDETVGKDGLLAEYVAQMAAQKAAAIAEQSP EALVIGCDTIVALAGEILGKPTSREDGYRMLRLLSGKTHDVYTSVTLKQGEKERSATVHS TVTFYPLTDTEIYAYLDTAEYADKAGAYGIQGQGALLIEAIAGDYYAIMGLPIAKVARLL KEFN >gi|307679277|gb|GL456450.1| GENE 133 130574 - 132706 1925 710 aa, chain - ## HITS:1 COG:SPy2121 KEGG:ns NR:ns ## COG: SPy2121 COG0323 # Protein_GI_number: 15675871 # Func_class: L Replication, recombination and repair # Function: DNA mismatch repair enzyme (predicted ATPase) # Organism: Streptococcus pyogenes M1 GAS # 1 710 1 651 660 678 52.0 0 MGKIQELSEQLANQIAAGEVVERPASVVKELVENALDAGSTQIDIFIEEAGLKTIQIIDN GEGIAKEDVLNAFKRHATSKIHTRDDLFRIRSLGFRGEALPSIASVSEMIVETATAEEEE GSYVILKGGKVEENRPAALRKGTKMTVSNLFYNTPARLKYVKTIQTELANIGDIVNRLAL SHPKVAFRLVHDGHKMMSTTGNGDLKQTIAGIYGISTAKKMLKIEGKDLDFTLTGYVSLP EVTRASRNYLSTIINGRYIKNFALNKAIVAGYGSKLMVGRFPIAVLEIEMDPLLVDVNVH PTKQEVRLSKEKDLMALIEQTIQEVLSQEQLIPNAADNLRFKKKLPPEPKAEQMEIPLST EQPAVKQRPGSLSYNPATGRFYAEHATDETPVSSAPEAVNQTERAVDPMDDPFAPPVPES TSVAEETSAYETSSATVDSANHWETASNEQQVIAEETKITEVSDSEPSLRSSEAADEVFQ EEMKLHPEFDANSAASQRELKQALNKLEEERPTERFPELEYFGQMHGTYLFAQSKDGLFI IDQHAAQERIKYEYFREKIGEVSDDLQELLVPIVIDYPNSDALKIKEQKETLAEVGIHLE DFGQNSFIVRAHPTWYPAGEEESIVREMIDMLLTTGSVSVKKFREATAIMMSCKRSIKAN HYLNEQQARVLLKDLALCENPFNCPHGRPVLIHFTNSDMERMFKRIQDPH >gi|307679277|gb|GL456450.1| GENE 134 132738 - 135314 2952 858 aa, chain - ## HITS:1 COG:lin1440 KEGG:ns NR:ns ## COG: lin1440 COG0249 # Protein_GI_number: 16800508 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Listeria innocua # 5 858 2 859 860 994 60.0 0 MPQKTKNTPMMEQYLSIKAQYKDAFLFYRLGDFYELFYEDAINAAQILELTLTSRNRNAD DPIPMCGVPYHAAQGYIDTLIEQGYKVAICEQVEDPKTTKGMVKREVVQLVTPGTVMNSK GLEAKDNNYLTAVLTDGNQFGFAYVDLSTGELKTAVLADEEGVLNEASALQTKEMVLGSG IPESLKENLSLRLNIIFSTQETVEENAEFSFLTNELINPLEIEITGKLLSYLSVTQKRSL SHIQKAVEYQPDHFLKMDHYSKFNLELSQSIRTGQKKGTLLWLLDETKTAMGGRLLKQWL DRPLIQERQIKARQEMVQSLLNAYFERLDLQAALTNVYDLERLAGRVAFGSVNGRDLIQL RTSLEQVPTIRQLIVGINQGEWDDLLVDLNPVEDLVALIATAINEEAPLQITEGNVIKDG YNDQLDEYRDAMRNGKQWLAELEAKERQETGIKNLKIGYNRVFGYFIEITKSNLANLEEG KYERKQTLANAERFITPELKELERLILEAEEKSVELEYQLFLAVREQVKTNIDRLQTLAK TISAVDVLQSFATISERYQYVRPTLRSNTKNLAIVEGRHPVVEKVLGHQEYIPNSIRMNP ETDILLITGPNMSGKSTYMRQLALTVVMAQIGCFVPAESAEMPIFDQIFTRIGASDDLIA GQSTFMVEMMEANQALRHATPNSLILFDELGRGTATYDGMALAQAIIEYIHREVQAKTLF STHYHELTVLDETLKGLKNIHVGAVEKDGEVVFLHKMMEGPADKSYGIHVAKIAGLPSPL LERAATILSALEAEETTIPSSVHHEEVSEVHEETEQLSLFKEVSTEELSVIDTLKKMNLL EMTPLDALNMLHQLQKRI >gi|307679277|gb|GL456450.1| GENE 135 135315 - 135686 635 123 aa, chain - ## HITS:1 COG:no KEGG:EF3168 NR:ns ## KEGG: EF3168 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 123 1 123 123 170 100.0 2e-41 MEPLNLDAQSNKELEKLLHLIGQDEVIQRYQAIEEKVKKNKKLTELVEEIKAAQKDAVQF AHYGKPTAEKEAIQRADAKTKEFDEHPLVVAYREQLIEANDLVQHVTALIQYRVNEELEK EGN >gi|307679277|gb|GL456450.1| GENE 136 135775 - 136572 952 265 aa, chain - ## HITS:1 COG:lin1438 KEGG:ns NR:ns ## COG: lin1438 COG1692 # Protein_GI_number: 16800506 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 263 1 264 267 380 67.0 1e-105 MRILFIGDVVGSLGREALATYVPKLKKKYRPQVTIANGENAASGRGITGKIYKKFLQDGV DVVTMGNHTWDNKDIFEFIDDAKKMVRPANFPEDVPGQGMVFVKVNQLELAVINLQARTF MVPLEDPFKKAAELVAIARKRTPLIFVDFHGETTSEKQAMSWFLDGQVSAVVGTHTHVQT NDARILPKGTAFLSDVGMTGPYDGILGMKREPIIEKFMTALPKRFEVVETGRTILSACIL EIDDQTGQAKMIEPIQISEDRPFQE >gi|307679277|gb|GL456450.1| GENE 137 136726 - 138282 2166 518 aa, chain - ## HITS:1 COG:lin1436 KEGG:ns NR:ns ## COG: lin1436 COG1418 # Protein_GI_number: 16800504 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Listeria innocua # 1 518 3 520 520 608 73.0 1e-174 MVLNILLAIVGLIVGLGLGFVIAKSRHDKAINGAKISASSILENARKESETLKKEALLEA KEENQKYRSEIESELKESRLELKSQENRLIQREQTLDRKDDSLEKREGSLEEKEEKLGAR QQLIDEREKEVENLINQQHQELERIASLSKEEAKSIIMKSTEEELNHELTLMVKESEQRA KEESDRKAKNLLSLAIQRCAADSVSETTVSVVTLPNDEMKGRIIGREGRNIRTLETLTGI DLIIDDTPEAVVLSGFDPIRREIARMTLEKLIQDGRIHPARIEEMVEKSRKEMDERIREY GEQAAFEVGAHTLHPDLIKILGRLRFRTSYGQNVLNHSIEVAKLAGVLAAELGEDVQLAK RAGLLHDIGKALDHEIEGSHVEIGAELAAKYKENSVVINAIASHHGDVEATSVISVLVAA ADALSAARPGARSESLENYIRRLENLENISNSFEGVDSSFAVQAGREVRVMVKPEEISDL ESVRLVRDIRKKIEDDLDYPGHIKVTVIRETRAVDYAK >gi|307679277|gb|GL456450.1| GENE 138 138478 - 138573 62 31 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSEPIHIKQLSQTADYAAFVLKFKQFVTAET >gi|307679277|gb|GL456450.1| GENE 139 138679 - 139725 1520 348 aa, chain - ## HITS:1 COG:lin1435 KEGG:ns NR:ns ## COG: lin1435 COG0468 # Protein_GI_number: 16800503 # Func_class: L Replication, recombination and repair # Function: RecA/RadA recombinase # Organism: Listeria innocua # 3 346 2 344 348 508 79.0 1e-144 MADDRKVALDAALKKIEKNFGKGSIMKLGEKADQKISTIPSGSLALDVALGVGGYPRGRI IEVYGPESSGKTTVSLHAIAEVQRNGGTAAFIDAEHALDPQYAEKLGVNIDELLLSQPDT GEQGLEIADALVSSGAIDIVVIDSVAALVPRAEIDGEMGASHVGLQARLMSQALRKLSGS INKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKQGTDIVGNR TKIKVVKNKVAPPFKVAEVDIMYGQGISQEGELLDMAVEKDLISKSGAWYGYKEERIGQG RENAKQYMADHPEMMAEVSKLVRDAYGIGDGSTITEEAEGQEELPLDE >gi|307679277|gb|GL456450.1| GENE 140 139839 - 141083 212 414 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 268 406 759 898 904 86 38 1e-15 MKAEIIAVGTELLLGQVVNTNATFLSEELAALGIDVYYQTVVGDNGGRLETLLTEAEQRS DLIVLCGGLGPTEDDLTKQVVAQHLHKSLVEDQEGLNRLHQFFQQSKRPMTENNLRQVLA IEGGQVLQNPTGLAVGSFVTEGTTSYLLLPGPPNELIPMFQQAARPLLIDAFPQEEQLIS RVLRFYGIGESQLVTEIQSLIAHQTNPTIAPYAKPNEVTLRLTVKTKDLVAGEELLTATE EKVLAKVGDYFYGYGDDNSLAKVTVDLLLQNGQTVTAAESLTAGLFQSTLGEIAGASKIF KGGFVTYSQETKENFLGISHELLEEHGTVSEACAKEMAEKARQLAKSNYGLSFTGVAGDP LEGQPTGTVWIGLAEEGQPTVAECFHFNRDRNYIRQSAVMRGLDLLRRRIINKK >gi|307679277|gb|GL456450.1| GENE 141 141275 - 142480 1526 401 aa, chain + ## HITS:1 COG:no KEGG:EF3173 NR:ns ## KEGG: EF3173 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 20 401 20 401 401 460 99.0 1e-128 MSVVLVLLGLLGLLVSGGLTIKALIKKQPKKQYGYAALASAALFIGGVATTDSSPTLSLD AESVETDANGSATIKGEYDGNSKLTANGKEVKTKDKTFAYKVKLSDEKTQKITFVAEKKD TKVEKSVEVTPSKEFIASITDSEQELAKTEKALAYAEKQPSQKNYDEAATLVSSLSQEYE EYNDRLEKIKEAVPVDEAVTTAEKSKSKSDYQAAEKLVAAAPVGKEGFQQRLTTVQTAIV EKEKNEQLVASATAAVEKAEQEPTNEAYYNEAIKQIDALNSPNQALTKRVAVVKTQLDAH KEKQRKEAEAQKLAAEKAQKEQAEAAAKAQAEAEAQQAAQAPAEVETAAAEAPSGNALIK GSRNGIYHVPGSRYYNRTTNPVAWFSTVEEAEAAGYRAPKQ >gi|307679277|gb|GL456450.1| GENE 142 142559 - 143179 877 206 aa, chain - ## HITS:1 COG:BS_ywnB KEGG:ns NR:ns ## COG: BS_ywnB COG2910 # Protein_GI_number: 16080715 # Func_class: R General function prediction only # Function: Putative NADH-flavin reductase # Organism: Bacillus subtilis # 1 204 1 208 213 192 50.0 4e-49 MKVAVLGATGKEGQLLLAEAKRRGMDVTAIVRNASKITDGTPTIEKDVYQLTTEDIQAFD VLISALGFPDVQDFPKSTQHLIEILTNQKTRLFVVGGAGTLYVDPEHTTQLKDTPSFPAE IQPLASAMGEALNLLKEAQNIHWTYISPAAMFDADGPATGHYEVAGEELTTNSQGDSYIS YADYAVAMLDEVESNAHPNQRISVYQ >gi|307679277|gb|GL456450.1| GENE 143 143247 - 143672 523 141 aa, chain - ## HITS:1 COG:BS_ywnA KEGG:ns NR:ns ## COG: BS_ywnA COG1959 # Protein_GI_number: 16080716 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Bacillus subtilis # 3 135 2 132 133 116 50.0 1e-26 MAMSTKLSVAIHILSLIETGPQEQVTSEYIASSVNTNPVVVRRLMSQLKKAGLIHSMRGA NKNTLLKKPEEISLYEIYTAVELEREIFNIHQNPNPNCSVGANIQSVLETEFTKVQQKME EELKSITLADVIHEIEVKRDK >gi|307679277|gb|GL456450.1| GENE 144 143761 - 144144 312 127 aa, chain - ## HITS:1 COG:VCA1051 KEGG:ns NR:ns ## COG: VCA1051 COG3304 # Protein_GI_number: 15601802 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Vibrio cholerae # 1 119 2 130 143 95 44.0 2e-20 MKTLGNILWFIFGGFFGGLSWLFAGVIWCITIIGIPIGLQCFKLAGLSFWPFKKRVVYSD SGVSLVVNIIWLIISGLPLAIGHCISGLFLCLTIIGIPFGQQSFKLAKLALMPFGARVVS TNDFYFE >gi|307679277|gb|GL456450.1| GENE 145 144308 - 145099 892 263 aa, chain + ## HITS:1 COG:no KEGG:EF3177 NR:ns ## KEGG: EF3177 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 263 1 263 263 485 98.0 1e-136 MDLHLTVDLKKTKTLIDLADQAHLIIEQTTKLPKKEAAILFLLRDNQLVALGLAEEKATY KEVSFDHSILLKPTWDTELAYLAQAFLDDAKESGLTLEATPATVKIPKSAAATVTNYKET VTFILERFGYSLFKKPAPKKARPAKARHKWTKEVSQIPFYIDTRQSKATVFWQKRNEMLI KAGATMMPEAPLNKDGSVGFSARFGEKLRDERKGQFKDFVTTEDIVLKSVNEVGLFLYFA GTNSWLELVDENGKTLNEWTVVE >gi|307679277|gb|GL456450.1| GENE 146 145152 - 146288 1494 378 aa, chain - ## HITS:1 COG:lin0289 KEGG:ns NR:ns ## COG: lin0289 COG0624 # Protein_GI_number: 16799366 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Listeria innocua # 1 377 1 378 378 378 55.0 1e-105 MEKSEKISILQDVVKIKSVNGNEEEVAIYLQNLLKKYEIPSELVSYAPNRSSLVAYLGEN REKVLGFSGHMDVFSEGDESQWTFPPFAAHIEGNKLYGRGSTDMKSGLVAMVLAMIELKE KEVPLNGAVKFLGTVGEEVGELGAGQLTEKGYADDLSALVIGEPTNYNLMYAHMGSINYS VVSHGKEAHSSMPEEGINAINNLNEFITEANQQMAEVTANYENPELGRTIHNVTVIKGGT QVNSIPGQAALQGNIRSIPEFSNDQVIALLQKIVDELNKKEKHQLELTIDYNKIPVKAEK DSALIQAIQAQFDQPLPLVTSAGTTDLAEFTKSDNTFDCVVFGPGVTTTAHQVDEYVEID NYLDMIDKYQAIAKSYLN >gi|307679277|gb|GL456450.1| GENE 147 146418 - 147302 826 294 aa, chain - ## HITS:1 COG:no KEGG:EF3179 NR:ns ## KEGG: EF3179 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 294 1 294 294 530 99.0 1e-149 MEDFVKSVVKNFSKEYRQQPLPTDLQAEVKARFHKEKKRYTWLRFRNRSLQSSLVVACGF VLSVNLFPGFSEAARNIPVLDKIVQLVTIKTLTAKKQESEVNIDVPKIQTSQESSVADTL NKKYLKEAQTEFQQVKGQLFDGSRVSVTGDYEKVVDDRRFLVVKRTFTEIKGSSATTTKY DTIDKRANVVVSLPLIFKNDFYIDVISSEIKQQIADQMKNDSNKIYWSEKEDAPSDVQPF KKIKKDQPFYINEKHQLVIVFPQGEIAPYYMGTPEFVIPNQVIENELAAPNYLK >gi|307679277|gb|GL456450.1| GENE 148 147327 - 147824 571 165 aa, chain - ## HITS:1 COG:BS_sigV KEGG:ns NR:ns ## COG: BS_sigV COG1595 # Protein_GI_number: 16079766 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Bacillus subtilis # 7 161 2 157 166 88 33.0 6e-18 MVFDGWKRKKQIRALETLVDTKYEKMYRIAFNYTHSKEDALDVIQESFEKALKAIQKGPD IKDFEAWFFRILLSVATDYWRKKKREAVHIEKDEHVLALLNNPQRSFLEIEEIINQLDSP NREIILLKFFEGFTLKEIALILDINENTIKTKMYRSLNELRSLLN >gi|307679277|gb|GL456450.1| GENE 149 147945 - 149396 825 483 aa, chain - ## HITS:1 COG:no KEGG:EF3181 NR:ns ## KEGG: EF3181 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 483 1 483 483 867 99.0 0 MMFLNKVDKRKIALFQLLENAPMLTESKETVMQELELSEFIVNKTVAELNADFIEFGLSE DFQIVSDGIFLTLNESGTETSATLIDCYIKESLRFAMFQDFFFQRFDSVNEFALEHFVSH TLAYKEFKELKKMLENYQITINKEFHLVGNETNLREVTTLVFLQLYQRDFSLYGKKVLEQ IRNFELFFSEKVHLNQRAGYAQAKCFHFLAVSLVRTQQQFYVEKKVDSQVLKQLAGDNQQ NVFNWLESLQVPEPQRTNEGNYLLLFLIAEEWLQVASAALCQRFAEIQQLNRDLLSYLKI QFQLSEEVLQGFEQKVTIVHFKLFHFPIEANYSYRKMDITYFAETYTEYFSASRQFIQEQ KTNPAVWDARQFLFYRYLLLMVDALPLKKVLAPITLCVDFSFGEAYNRMIQKNIEKITEW NIIFKAHVDESVQLILSDIHFVDWPEITQIIWLAPPRPVDWSHFIKTLSALRPHSGEENK KSS >gi|307679277|gb|GL456450.1| GENE 150 149380 - 149865 485 161 aa, chain - ## HITS:1 COG:no KEGG:EF3182 NR:ns ## KEGG: EF3182 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 161 1 161 161 218 99.0 5e-56 MRKKYLFLFSSLLIFTAVEIEPIQTLATPIYNPLEPTEEIQPKPESITPQEKSEPEQPAP IPPEDQKTTVPSEEKKPSPKKKDKPVEKPAMSKEKKKQTKETTAHPLQVNKDFVFPNGLG AGGDEESESYLAAVGYFLSGNGLYGKKMDVREVYDIDDVFK >gi|307679277|gb|GL456450.1| GENE 151 149967 - 151043 995 358 aa, chain - ## HITS:1 COG:no KEGG:EF3183 NR:ns ## KEGG: EF3183 # Name: not_defined # Def: cell wall surface anchor family protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 358 1 358 358 633 99.0 1e-180 MNRWKVYATVIACMLFGWIGVEAHASEFNFAVTPTIPENQVDKSKTYFDLKMAPGAKQTV EIQLRNDTDEDITIENTVNSATTNLNGVVEYGQNGIKPDKTLRFNLKDYVETPKEIILPK HSQKTLPLTITMPKDSFDGVMAGGITLKEKKKETTTSADQSKGLAINNEYSYVVAIILQQ NETKVQPDLKLLGVKPGQVNARNVINVSLQNPQAAYLNQLHLINTVSKGGETLYQSDTED MQVAPNSNFSYPISLKGERLTPGKYVLKSTAYGVKDEKGTYQVKGANGEERYLYKWEFTK EFTISGDVAKELNEKDVTIKGTNWWLYLLIALIILALLLLIFFLYRKKKKEEEQQSEQ >gi|307679277|gb|GL456450.1| GENE 152 151155 - 151913 1037 252 aa, chain - ## HITS:1 COG:no KEGG:EF3184 NR:ns ## KEGG: EF3184 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 252 1 252 252 366 99.0 1e-100 MKKTKVMTLMATTTLGALALVPMSALAVDGGEYQTNGAIQFAPNTNPTNPVDPTNPDPDK PITPVDPTDPTGPKPGTAGPLSIDYASSLSFGEQTITSKNMTYYAETQKYKDNAGADQEG PNFVQVSDNRGTETGWTLKVKQNGQFKTEANQELTAAKVTLSNGRVVSASQSAKPTTAPA TIELNPTGAESVVMAAGDKEGAGTYLMSWGDSVDAAKTSISLEVPGSTTKYAKKYTTTFT WTLTDTPANTGN >gi|307679277|gb|GL456450.1| GENE 153 151914 - 152714 1037 266 aa, chain - ## HITS:1 COG:no KEGG:EF3185 NR:ns ## KEGG: EF3185 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 266 1 266 266 459 100.0 1e-128 MKKTVVYSLLFGTMLLGATVPAEAATVVFDSEQSIVFTPSTDGTDPVNPENPDPEKPVRP VDPTNPDGPNPGTPGPLSIDYASSLDFGSNEISNKDQTYFARAQTYRNPDGSASELATAN YVQVSDLRGTNAGWVLKVKQNGQFRNAETLHKELTGATVAFTEPSVRSNATDVLPPTATA NIQLDAAGAETVVMQAPEKTGAGTWITLWGQAEKVTEKNQQGQQVNATITRAISLTVPGK TPKDAVQYKTTLTWLLSDVPVNNGGK >gi|307679277|gb|GL456450.1| GENE 154 152719 - 153453 1061 244 aa, chain - ## HITS:1 COG:no KEGG:EF3186 NR:ns ## KEGG: EF3186 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 244 1 244 244 405 99.0 1e-111 MKKTVLAVVGIVGFSGVLATQQAFAEDINVNYTSNGAITFEPDTDPTKPVNPTNPDEKVE PEDPTDPTGPKPGTAGPLSIDYASSFQFGAQKITSDTKDYYAQIQTFKDGTTGPNYVQVT DKRGTQEGWTLSAVQNAQFKTAQNEELVGAALSIANAGVTSIVDAAYAPTPTAAHTFVPG TEVELVKAEDGKGMGTWVYRFGKDATEGATAVKLNVPGKAIKLAKEYRTTLTWTLKSVPT NVGG >gi|307679277|gb|GL456450.1| GENE 155 153410 - 153799 127 129 aa, chain - ## HITS:1 COG:no KEGG:EF3187 NR:ns ## KEGG: EF3187 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 129 1 129 129 209 97.0 2e-53 MKKYLLLSCFLGLFSFCHSDTAFGEAAYENSGVVSFYGTYEYPTEESTTATSNSSTTTEP TKPADGGASSILSSGIYGSRQGRLPATGTTNQEPFIYLGISLITIGILFIKRRREDEKNS ISSSRDCRI >gi|307679277|gb|GL456450.1| GENE 156 153819 - 158669 4804 1616 aa, chain - ## HITS:1 COG:no KEGG:EF3188 NR:ns ## KEGG: EF3188 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 63 1616 1 1554 1554 2595 99.0 0 MKKKIAVLLATCLLVQPFLSVSAWAIEGEQQTERTQTQPKTAETSTSEATKESSAHSIEQ SSMTESSAITEKVTTSSTEIKPSEEQKQITLTFETTDQALFQNDAKSYQVVKEKNQPLRT EELPKWANSEENATFVGWSYQGKTYTNEELLQLEFSEDTQLTAVFKQKLTRMARAVSVDQ SIADTIAPADKTKVIVVPSPAGDGAAYKEYASTEAGLKEALFDLYQQGNNGDFTLYIGNN ITTSAATTAKVIPDTVTASNMTFYALQGKVNHLVITGNSADPISMDQTAPTGSKTLGFNQ NIYFGSNITLRNLNYTGTNMYLNGYSLNLNGGSSGNGLTVYGGTDTGDVSGNPTLTVNST GTGTWNFYGGNQNGGNLAGNPTIVINNTRSGLNTLSGGANIGTVTGNTSLVVNDSGGRIA SIYGGGYGTNATNTANVTGNVSTKVAITNAATGFQLSTYYGGVQYGNIGGKVTNDISGYG RWYTAGQRFIGGSSRGDIGTNRTTDGITTNLNTQLYSAGRADFEGGNQYSGTIIGDITNV VTAGTNSAGGINDFNGGAGNNVSKFNKSQIGASNEATYDAYTPQQRAELAKSAAAFKVFG NISSKLVSGSFNNGAIYSTAAGRGGYIEGNTTIEVGTANGDGSLGGDGMAYSGAKPTSLD YSTTDKSRGYSSGWDIVGGGGYPASNDTWDIYIKGDTKTVLNNTIARWTYGGSFSGVVEG NTSNTLNGGIADTLEGTGYQAARVYGNGQTIVNNGQVDWFLSGGGWNDAKNVGNVGVTVY EGVINASMGASYGASGGHTITGNSDNRIYGGNFSGTPRTGANGFSGGITNAGSLLGNAKL LIDLRNYNGEFKLPGNTYITGGRPYGQNTTLGTDESNTITLNIFTKTGVESLNGASIYGD GGTNAAYTKNGKITMNIQAAGSSIGNLYATQYSNISGGKILRDVTANVQGAVSINGLSGG SSTDNFTNAIVNASSNKVAFNFGTNVDGTDNYQTEPLNATGLGVVNFTELNVTNGIKLMA NGGNIKNGVSATAANHSTTYNEFGSIHLSKNAGIGITNTANLISASKLTVQDHATLETIP GTGKVNIADFEAVDPTKDELLWIKPTTDTTALVDSTGTWFGNVKAYQVLTINPTVNNATK LTPTTFHGIEKATGKTFIGDNDVTKGANGYGIAIPGSIIDYEVETPGIVAGAGTISHDVK EVKAGNAPLTLQAWGTEVAGQKVQKGRLMIPTSSALTPTLSFLPDEVTGSWLHQGTVKSS EVGSAIEQIPEQKDTPPLSWKATNMNYSYQVKVQFSNKVELSGQSVIVTEDEAAQLTTVD KVIEMLGAKGRPFFKTSLKETDLPQIQAPLAEKTVSRTHDIQLEAGTSGDNLQNKTVHLV VVKNESVLAKDRSFALYATSAHLKLKEANGLTNSDELAQWTQATVIFADGRANQTPSLDA ATFQAIQQAKPEELAKTVPANYQFTEAGETLNKKVNVSISGELTLEKVPKTIDFGKQKIS AKPEVYWPTLSDDLVVQDTRGTESTPWKLNVQVTNPLTNGTDQLEDLSLVTDKGEFLLNK GDTVVTENEGSGSGSYTINQGWGAANQRGLKLSVPVEKQKVGEFKGTLSWSLVMAP >gi|307679277|gb|GL456450.1| GENE 157 159045 - 160058 998 337 aa, chain - ## HITS:1 COG:SA0610 KEGG:ns NR:ns ## COG: SA0610 COG0657 # Protein_GI_number: 15926332 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Staphylococcus aureus N315 # 60 334 50 318 347 152 31.0 7e-37 MKRKIVRFILWLLGIIVVICLGVFLAFQLSPKPGAWVINQLFAGEVEIKDSASYDKALPN VQFQENQTYPSSRKKNTFDLYYPQTSKQAVPVVLWVHGGGYVGGDKSGMKEFATRLVADS SVAFISMNYELAPDAPYPSQLQQVNELVQFLLEKKQAYPMLDLSKLFIGGDSAGAQIALQ YATVQTNANYAKELGMTAALPASHLKGTLSYCGPVDLKQMANQQSDNRFMKFFVKTVAWS LLGTKDWQTSAELQEVSLVDKVTKEFPPTYLTDGNSFSFQEQGLALVQRLKTLNVPVSAL FFKDKKATITHEYQFDYQTKEAKQCYQETVQFVNTYK >gi|307679277|gb|GL456450.1| GENE 158 160096 - 160176 56 26 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFFSQSVYFETAFLEFDVLLSFEMLS >gi|307679277|gb|GL456450.1| GENE 159 160224 - 160769 584 181 aa, chain + ## HITS:1 COG:BS_yueJ KEGG:ns NR:ns ## COG: BS_yueJ COG1335 # Protein_GI_number: 16080227 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Bacillus subtilis # 2 180 3 181 183 241 59.0 6e-64 MKALISIDYTNDFVATDGKLTTGAAGQAIETALVQQTKHYFDNGDFVVFAIDGHDPLDRY HPENKLFPPHNVLGTDGRNLFGSLADFYQAHKNEATIYWMDKRYYSAFSGTDLDIRLRER GITELCLTGVCTDICVLHTAVDAYNLGYQLMIPERAVASFDEQGHEWALRHFKQTLGATI L >gi|307679277|gb|GL456450.1| GENE 160 160966 - 161649 959 227 aa, chain - ## HITS:1 COG:BS_ysbB KEGG:ns NR:ns ## COG: BS_ysbB COG1346 # Protein_GI_number: 16079942 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative effector of murein hydrolase # Organism: Bacillus subtilis # 1 226 5 230 231 242 66.0 4e-64 MNPYVGIIISLAVFGIGTWLFKKSKGFFLFTPLFVAMILGVVVLKVTGISYEQYNEGGKY ISFFLEPATVAFAIPLYKKRDVLKKYWLEILTALTIGSFGSLVAVYFAGKVIGMDNHLVA SILPQAATTAIAVPISQTVGGIASITAFTVIFNGVLTYALGRIALKWFKINNPIAKGLAL GAAGHALGVAVGIEMGETEAAMASISVVVVGVVTVLVVPFFATVIGL >gi|307679277|gb|GL456450.1| GENE 161 161646 - 162065 490 139 aa, chain - ## HITS:1 COG:BS_ysbA KEGG:ns NR:ns ## COG: BS_ysbA COG1380 # Protein_GI_number: 16079943 # Func_class: R General function prediction only # Function: Putative effector of murein hydrolase LrgA # Organism: Bacillus subtilis # 3 134 4 135 146 112 58.0 3e-25 MEKKVYSFLQQAAVFAIIMLIANGLAFISPIPMPASVIGMVLLFIGLCTKVVKLEQVEGL GNSLSTVITFLFVPSGISLVNSLGIMQQFGVQIVFVILVATLALLATTGWTGAFLLHMKD ARKEKEPAATKKAKGEVRA >gi|307679277|gb|GL456450.1| GENE 162 162217 - 162945 779 242 aa, chain - ## HITS:1 COG:BS_lytT KEGG:ns NR:ns ## COG: BS_lytT COG3279 # Protein_GI_number: 16079944 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Bacillus subtilis # 1 239 2 239 241 202 45.0 3e-52 MHVLIVDDEPLAREELSYLVSQHPQVTSVAEADSVAEAMEEMMDQKPDLLFLDIHLTDES GFDLAEKLTHLKKAPYLVFATAYDQYALKAFQVNAKDYILKPFEEEKITQVIEKASKEMA QAVPENTAEKGPKSEAIPIQGEDRIYLVAPEDIYLVSVEERQLSIFVDQQVYKMTGTLNS IEQKLPATLFIKTHRSFILNRTKIQEIQPWFNNTLQVILTNGSKVPVSRSYVKEFKEKLG LS >gi|307679277|gb|GL456450.1| GENE 163 162926 - 164695 1605 589 aa, chain - ## HITS:1 COG:SA0250 KEGG:ns NR:ns ## COG: SA0250 COG3275 # Protein_GI_number: 15925963 # Func_class: T Signal transduction mechanisms # Function: Putative regulator of cell autolysis # Organism: Staphylococcus aureus N315 # 1 582 1 582 584 620 55.0 1e-177 MVELFILMMERVGLIILLAFLLVNVPYFKRVLLSREKMSSKVQLILIFGLFAIISNFTGI EIAKNQIVPNNLLTYLSSNASIANTRTLVIGVSGLVGGPIVGSTVGLIAGFHRVIQGGGH SFFYVPASLIVGLIAGFLGSRMAKQTVFPSAGFSAIVGACMEMIQMIFIFFFSGNLSDGA TLVRFIALPMILLNSVGTFIFMSILTTTLKQEEQAKAVQTHDVLELAAETLPYFREGLNK NSSKKVAEIIKHYTKVSAISMTNSHQILAHVGAGSDHHIPELEVITELSREVLRTGRMTI AHAKEEVGCSDPNCPLQAAIVIPLFSHQQIVGTLKMYFTDPAQLTHVEEQLAEGLGTIFS SQIELGEAEVQSKLLKEAEIKSLQAQVNPHFFFNAINTISALMRKDSEKARKLLLQLSKY FRGNLQGAVQTTIPVSQELEQVKAYLSLEQARFPNRYQVTFDVEEAVASEKVPPYAIQVL VENTIKHAFGSRKENNQVRVVVKAKQHKLHVDVYDNGQGIPEERRLLLGKTTVTSEKGTG TALENLSRRMANLYGSEGCFLIENLETGGSHVHLEIPMEQEELDARINR >gi|307679277|gb|GL456450.1| GENE 164 164787 - 165605 1038 272 aa, chain - ## HITS:1 COG:Cj0772c KEGG:ns NR:ns ## COG: Cj0772c COG1464 # Protein_GI_number: 15792110 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Campylobacter jejuni # 34 272 24 257 257 142 38.0 6e-34 MKKFYLATFAVIATVILAACGGNKQADQKEDKEITVAVQLESSKDILEIAKKEAEKKGYK INIMEVSDNVAYNDAVQHDEADANFAQHQPFMEMFNKEKKADLVAVQPIYYFAGGFYSKE YQDAKDLPENAKVGIPSDPTNEGRALAILNANGVIKLKEGVGFNGTVADVVENPKNITFE SIDLLNLAKAYDEKDIAMVFCYPAYLEPAGLTTKDAILLEDEEASKHYALQVVTRKGEKD SEKIKVLKEAMTTKEVAEYIKKNSKGANIPAF >gi|307679277|gb|GL456450.1| GENE 165 165618 - 166289 762 223 aa, chain - ## HITS:1 COG:STM0512 KEGG:ns NR:ns ## COG: STM0512 COG2011 # Protein_GI_number: 16763892 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Salmonella typhimurium LT2 # 12 222 6 216 219 120 42.0 3e-27 MTFSETFAEYWPSMLIGLKETGIMMSISMAICLLVGLPLGLGLFLANPKVKGHQPWLYWV LNFIVTVIRSFPYLLFVIALIPVTRSVLGKAFGPIPSSVPLSIVAIAIFARLVEQVLLDV PEEIYFLANSLGTSKVQYIWHFLLVEARSGLVLAYTTTTVSMVSYSTVMGVVGGGGIGDF AVRVGYQRYEYGIMYVAIVIMIALVFILQMLGNFIAQKLDKRK >gi|307679277|gb|GL456450.1| GENE 166 166286 - 167008 366 240 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 227 1 230 245 145 36 1e-33 MIELVNVSKVYQETHALKNIHFSVQPGEIVGIVGKSGSGKSTLLRLLNLMEQPSEGEIRI DGRNVQTFSKKEVRQQQQQMGMVFQHYNLLENLKIYDNVALPLKLLKEKQPEKIERLLTF VDMDHKAEAYPAQLSGGEKQRVSIARALSRNPKWLLCDEATSSLDEENTESVVRLLHKTH QEFRPTIFFVSHELETVKRLCNRILVMEKGQLIGEFLNNPQQYEEEPLSYLEKVERSLRP >gi|307679277|gb|GL456450.1| GENE 167 167370 - 167762 256 130 aa, chain - ## HITS:1 COG:lin0902 KEGG:ns NR:ns ## COG: lin0902 COG1765 # Protein_GI_number: 16799975 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Listeria innocua # 5 129 1 126 126 83 35.0 1e-16 MVERLTIIRGVEKFELQTKTARWVLAKEEGYSPVQMLVSAIGACGGYVYQSVLENSHIPF EFEKIEVTYSREVERRAQPLKQVTIFFYVSVPEDFQARATRCLKLVSPNCPVIQSLAERI TVEETVVFKK >gi|307679277|gb|GL456450.1| GENE 168 167969 - 168238 457 89 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29377650|ref|NP_816804.1| 30S ribosomal protein S14 [Enterococcus faecalis V583] # 1 89 1 89 89 180 100 4e-44 MAKKSKIAKAKKQQAMIAKYAPIRQALKEAGDYEGLSKLPKDAHPSRLKLRDQTDGRPRG YMRKFGMSRIRFRELAHQGLIPGVKKASW >gi|307679277|gb|GL456450.1| GENE 169 168349 - 168498 247 49 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29377651|ref|NP_816805.1| 50S ribosomal protein L33 [Enterococcus faecalis V583] # 1 49 1 49 49 99 100 9e-20 MRQTITLACAETGERLYLTSKNKRNTPEKLQLKKYSPKLRRRALFTEVK >gi|307679277|gb|GL456450.1| GENE 170 168514 - 169488 948 324 aa, chain + ## HITS:1 COG:all1751 KEGG:ns NR:ns ## COG: all1751 COG0523 # Protein_GI_number: 17229243 # Func_class: R General function prediction only # Function: Putative GTPases (G3E family) # Organism: Nostoc sp. PCC 7120 # 3 315 10 318 323 166 29.0 4e-41 MGIPITIVSGFLGAGKTTLINHALAQSPFPKEEIIIIENEFGQTGVDHALLLQTTERIIQ LNNGCMCCSLRGDLLASLSAILKVYQEEQQTVAQVILETTGIADPQPIIQTILTTPHIKN HFYIDSLLTVVDGHHWQQQLQETEAIKQLALADRLFFSVKEPADSTQLPTFQETLRTINP FADILSFQANEPLLASDFFQLNKFTATLTEHEMTHSPHEHAHEHHHHTFHSLTLTASSAL NEPLFTRWLDWLMYTHQEKLYRFKGILALQEHDLAIAMQGVNQQVAFQMTNHPPQETTIV LIGKELETKKIQETFQTLNKIATP >gi|307679277|gb|GL456450.1| GENE 171 169523 - 169645 115 40 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEKTDLSSAYRRLKSPNIKTRKRALKIIKEHKRNKQKKIA >gi|307679277|gb|GL456450.1| GENE 172 169666 - 171201 1623 511 aa, chain + ## HITS:1 COG:SPy0714_1 KEGG:ns NR:ns ## COG: SPy0714_1 COG0803 # Protein_GI_number: 15674772 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Streptococcus pyogenes M1 GAS # 1 319 1 322 322 322 52.0 1e-87 MKKFTLPLLAALSLILFGACGKTNTSDKTADGKEKLSIVTTFYPMYDFTKNIVGDEGDVK LLIPAGSEPHDYEPSAKDMATIHDADVFVYHNENMESWVPKAAKGWKKGAPNVIKGTENM VLLPGSDEDGHDHDHEHGEEGHHHELDPHTWVSPHRAIQEVTNIKEQLVKLYPKKAKTFE TNAEKYLTKLTALDKEFQTALKDAKQKSFVTQHAAFGYLALDYGLKQVPIAGLTPEQEPT AGRLAELKKYVTDNQIRYIYFEKNANDKIAKTLADEANVQLEVLNPLESLTQKQMDNGED YLSVMKENLTALKKTTDTAGKEVQPETSEKTEKTVANGYFKDSEVAERTLTDYAGNWQSV YPLLKDGTLDQVFDYKAKLKKDKTPAEYKTYYDAGYQTDVDHINITDSTIEFLVDGKPQK FTYKATGYKILNYAKGNRGVRFLFETDDANAGRFKYVQFSDHNIAPTKAAHFHIFFGGDS QESLFNEMDNWPTYYPSDLSKQEIAQEMIAH >gi|307679277|gb|GL456450.1| GENE 173 171259 - 172233 1097 324 aa, chain - ## HITS:1 COG:BS_yfjN KEGG:ns NR:ns ## COG: BS_yfjN COG0042 # Protein_GI_number: 16077870 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-dihydrouridine synthase # Organism: Bacillus subtilis # 1 320 1 320 325 490 76.0 1e-138 MSKNFWATLPKPFFVLAPMEDVTDVVFRHVVKEAGAPDVFFTEFTNSDSYCHPEGKDSVR GRLVFTEDEQPMVAHIWGDKPEFFREMSIGVAEMGFQGLDINMGCPVPNVAERGKGSGLI LRPEVAAELIDAAKAGGLPVSVKTRIGFTEMAEMEAWITHLLEQDIANLSIHLRTRKEMS KVDAHWEVIPQIMSIRDRVAPQTTITINGDIPDRQKGLELAEQYGVDGIMIGRGIFKNPY AFEKEPKTHTPQELLGLLRLQLDLQDKYAELVPRSIVGLHRFFKIYVKGFPGASDLRAQL MNTKSTDEVRQLLATFEAEHGVLD >gi|307679277|gb|GL456450.1| GENE 174 172425 - 173195 774 256 aa, chain - ## HITS:1 COG:lin0673 KEGG:ns NR:ns ## COG: lin0673 COG0842 # Protein_GI_number: 16799748 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Listeria innocua # 1 256 1 256 256 373 84.0 1e-103 MFSLYFTALKSLAVKETNRYLRIWVQTLVPPVITTSLYFVIFGKMIGGRIGDMGGFSYME FIVPGLIMMSAITSSYANVSSSFFSQKFQKNIEEILVAPVPTHVIIWGFVIGGVGRSILV GALVTIISLFFVPLHVVSWLMVIMTLLMTAILFSLAGLLNGIFAQSYDDVSIVPTFVLQP LTYLGGVFYAISMLPPFWQAVSKVNPIVYMISGFRYGFLGVQDVPIGISMTILILFIVVL YGICWYLVETGRGLRS >gi|307679277|gb|GL456450.1| GENE 175 173188 - 174123 963 311 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 301 1 303 311 375 65 1e-103 MTDALVIQDLRKVYASGVEALRGIDLTVEEGDFYALLGPNGAGKSTTIGIVTSLVNKTSG KVKIFGYDLDTEMVRAKQQIGLVPQEFNFNPFETVQQIVVNQAGYYGVSRKEAMKRSEKY LKQSNLWEKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRREMWAFLQ ELNAQGTTIILTTHYLEEAEMLCRNIGIIQSGELIENTSMKHLLAKLQFETFIFDLAPYT QAPVIEGYQSVFEDELTLAVEVERNQGVNHLFEQLSQQGIKVLSMRNKSNRLEELFLKIT EDTYQREDQHV >gi|307679277|gb|GL456450.1| GENE 176 174219 - 174293 56 24 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MELFKQFQVKINTLFVVSLLLKNS >gi|307679277|gb|GL456450.1| GENE 177 174380 - 174799 591 139 aa, chain + ## HITS:1 COG:SPy1057 KEGG:ns NR:ns ## COG: SPy1057 COG2893 # Protein_GI_number: 15675049 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Streptococcus pyogenes M1 GAS # 1 139 1 140 141 146 56.0 9e-36 MKRKFLIASHGNLAKGFQSSLDILADKGKELAVINAYVTPEDYTPIIQTFLQSLGAEEQA IILTDLYGGSVNQKIVQEVMTTKPDNVFIISNANLAIALSLIFLKEGEKLTKEDIQAAIA EAQIQFVELNPSNEEENFF >gi|307679277|gb|GL456450.1| GENE 178 174812 - 175303 743 163 aa, chain + ## HITS:1 COG:SPy1058 KEGG:ns NR:ns ## COG: SPy1058 COG3444 # Protein_GI_number: 15675050 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Streptococcus pyogenes M1 GAS # 1 163 1 163 163 222 77.0 2e-58 MITQVRVDDRLIHGQVAVVWTKELNAPLLVVANDEAAKNEVMQMTLKMAVPNGMKLLIRS VDDAIDVFNDPRGKDKRIFVIVNSVADATKIAKNVTDIESVNVANAGRFDKSDPATKTMV FPSVQLNPEELEAAKELASLTHVESYNQVLPTNSKLSLKQAVN >gi|307679277|gb|GL456450.1| GENE 179 175320 - 176135 1050 271 aa, chain + ## HITS:1 COG:SPy1059 KEGG:ns NR:ns ## COG: SPy1059 COG3715 # Protein_GI_number: 15675051 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Streptococcus pyogenes M1 GAS # 7 271 1 263 263 342 80.0 4e-94 MLMHATMAALAVFICFAGNYLTGQSMMERPLVVGLVTGILMGDMKTGVLMGASLEAIFLG NVNIGGVIAAEPVTATTLATTFAIISNVEQKAAMTLAVPIGMLAAFVVMFLKNVFMNIFA PSLDKAAREGNQKMVVTLHYGTWIIYYLIIASISFIGILAGSGPVNLFVESIPQNLMNGL SAAGGLLPAVGFAMLMKLLWDNKLAVFYILGFVLTAYLQLPAVAVAVIGTVICVVSAQRD VEFRDILKRKPAASSAVEGSAKEIEEEDFFA >gi|307679277|gb|GL456450.1| GENE 180 176132 - 176959 862 275 aa, chain + ## HITS:1 COG:SPy1060 KEGG:ns NR:ns ## COG: SPy1060 COG3716 # Protein_GI_number: 15675052 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Streptococcus pyogenes M1 GAS # 1 264 1 264 275 422 80.0 1e-118 MKLKENLSKEEKKMMRSVFWRSWTMNASRTGATQYHAVGVMYTLLPVINRFYKTKEERAE ALVRHTTWFNATMHINNFIMGLVASMEKQNSEDENFDASSITAVKASLMGPLSGIGDSFF WGILRVIAAGIGISLASTGSPLGAIVFLLLYNVPAFLIHYYALYSGYSIGESFIQKMYES GGMKILTKVSSMLGLMMMGSMTASNVKFKTILEVSVKGSEDVVKIQDYLDQLFVGIVPLA VTLLAFWLLRKKVNVNVVMFGIMFLGILLGLLGIC >gi|307679277|gb|GL456450.1| GENE 181 177107 - 179626 2191 839 aa, chain + ## HITS:1 COG:STM0571_1 KEGG:ns NR:ns ## COG: STM0571_1 COG1221 # Protein_GI_number: 16763948 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Salmonella typhimurium LT2 # 21 309 28 337 460 248 42.0 3e-65 MRLETYQHLVDILETSNTPMSTQEIATKIQLSRSVTSLYLNKLLEKGEVQQTGKKPVYWQ LTRATTPTTDVFRQYIGSQGSAKKAIEQCKAAMLYPPLGMPLLIHGASGVGKSFLAKLIY EYLKNEQIIGLEKFYTFNCADYANNPELLSSILFGHTKGAFTGAESEKQGLLAQANNSVL FLDEVHRLSNENQEKLFQFMDTGTFRPIGEEGKMVHSKVRLLFATTENPKKVLLPTFYRR ISVIVSLPNFKERPIRERIAILKNLFHREAKRMTKDINVDEEIFTALLENDEPGNVGSLS NKVQLLCASQLRKTLPNQPVVIGDATQPMITIPLDKEVLEEDTLSSDIFATFEALFTKEK TLAHLKTELTQFIKYCLDDEITLENDYFLQNLVTEVQTKNKLIINQPEQTEKPMKDVAKL LKILPPTFNEIMLLPVQAQLKEHYPRTVSLVKNLVSPLPEEYRFLTEVLLSVLLSGEISE TIPYQALLVAHGESTATSIQAVANKLCGTYIFDAINMPLTSSVRDIVAEVKDWLSQRDTS QGVIMLVDMGSLTQLYKSLKPQILGELLVINNLTTAYALEIGHQLMNEQLFYGIAKTAEK KFKTDVQYFEGFSVEKNIIVSSISGLDIAKQIKQICQKYLYTDIKVITLKYKDLVNTLDI ANAEENYLKETSLILTTSYLDNHTNVASVNLLDMLDEDAGTQLMEPFQNLMHPNNIDSMI NEFVHFFSKEGLSEKLEFLNPDVIIKQVENVTKNIEKRFDLTLSGKMKFNLMMHNALMVE RTMLGVEDYEVPANLEELTINQKPFFQNAKNIFYTLEQFYRIEISNWELYVIYEILSSR >gi|307679277|gb|GL456450.1| GENE 182 179773 - 180333 385 186 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229547362|ref|ZP_04436087.1| ## NR: gi|229547362|ref|ZP_04436087.1| conserved hypothetical protein [Enterococcus faecalis TX1322] conserved hypothetical protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis T11] hypothetical protein HMPREF9509_02524 [Enterococcus faecalis TX0411] conserved hypothetical protein [Enterococcus faecalis TX1322] conserved hypothetical protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis T11] hypothetical protein HMPREF9509_02524 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9496_02407 [Enterococcus faecalis TX4000] # 1 186 1 186 186 375 100.0 1e-102 MSSVVCQSCGANAFKWYDTADQVVECKYCHSKQAFIKGMGVESAIKVVGGKEEAETDSEY QERIIHQFGLKDQVIEVKNYSLIDIPLTFIVWLYLDILLGALFICGGFLSKNYRAWYANL LRWHFYGWRYTKSATEKEKASQRIRGSLLIKWLLQEDPNKTKKLIMVGVSILFTVLFVYT TGNGAA >gi|307679277|gb|GL456450.1| GENE 183 180483 - 180593 74 36 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRIIHVVVEILLLVHIYKKGLSLYGVSLKYEDFLGN >gi|307679277|gb|GL456450.1| GENE 184 181089 - 183161 1104 690 aa, chain - ## HITS:1 COG:no KEGG:Acid345_4269 NR:ns ## KEGG: Acid345_4269 # Name: not_defined # Def: hypothetical protein # Organism: A.bacterium # Pathway: not_defined # 51 690 8 646 654 345 35.0 4e-93 MELKDFHQSFIQQVNEHRQLTGSTFEEAFFENYVDYLVENDEIIGEPNFLHFEMPLSRNQ KACISGFAYNEFDGILYLMIVDDIDFSYEVPTLLLADAERLYKRARNFFLHSEEISKYGE ESNEAVNLAKSIYTRKKNDQNQFYELTSVKVFILTDKPLSRTFKRMEDEQIQEVKISTMI VGIERILSLSESRKGKVDLEIDLNNFQLIPAIKANETDEYESYLCNINGYTLAKLYNDYG SRLIESNVRSFLQTRGKVNKGIRLTILKEPEKFFAYNNGLTCTAKSILFKNNTISEIIGL QIVNGGQTTASLANVLVNEKDGAEKLQEVSVPMKLNVIKNMDIEDELVPAISRYANSQNK VSDVDLASNHPFHKKIEELSRKISTPAADGFSHGTYWYYERAAGQYAQETYKMPTSQRKN FLDRNPKNQMFKKSDFAKYFNIYQKRPDIASKGGQAAFKAFSTWIIQIWDKDSNLVNQEF YKEMVSNIIMFKELDKLTKCGAGSNGYKANINAYTLAYLYWYLEEKMNMKFNYLKIWQQQ SVPQLVLEFMDDISYEIRDILTRVEGNVTEYAKRIVAWDDVKSMVTINRDYDLSSITISK DDVAQLKKTARNNEKFESDFLDTASVYKRLDENPKYYTDMLIFIDGHCKEFLPKERNVIA MLASNKFISDKQSKIALQAIEKAELEGFGI >gi|307679277|gb|GL456450.1| GENE 185 183152 - 184060 415 302 aa, chain - ## HITS:1 COG:no KEGG:SUN_2432 NR:ns ## KEGG: SUN_2432 # Name: not_defined # Def: hypothetical protein # Organism: Sulfurovum_NBC37-1 # Pathway: not_defined # 61 287 75 303 323 90 28.0 1e-16 MRTDSFVLVPQINATRVYIGIDSRGMESIAIDFACKPDFELVTNKISSRIVSLSDTQRLF ISLVDDDSTTKEIFETFSNDIITSIEVATTEVEVLVIIANRFKYWTELFKRSERTYDEKW IQGFCGELWFLDNVLIDKLGSDMAIRSWIGPEKGNQDFITSDKIFEIKTKLQQANSIRIS NENQLSRDMYLTVIELSRSSEVAANSFNLYKLIASIYAKIKNPKILGEFNRKLLELDLFP TTKAKMYDKYSYEFISLVYFRINRDFPFIDHEDVPSAIIQYSYELSLDNITESKLSEEEV WN >gi|307679277|gb|GL456450.1| GENE 186 184057 - 186690 1577 877 aa, chain - ## HITS:1 COG:no KEGG:Acid345_4267 NR:ns ## KEGG: Acid345_4267 # Name: not_defined # Def: endonuclease # Organism: A.bacterium # Pathway: not_defined # 41 851 39 871 899 429 34.0 1e-118 MVDYELIEKHFNTAKIAIESEKKQTPKDVEAHLNLFKTTIFGMNDDTFNELVNRVLSIVP VSLEPAMTLSKPSPKWFTESRADRGSKRFDAYEQYLQNVLGYSSNVVTTIGNSMDTIMNN IGDPTFEGEFVKKGLVIGDVQSGKTGNFIALMNKAADAGYNMIVITTGTIEKLRRQTQVR IEEGFFGYFTATRNRESKTKTVKDFGNTEQTLALTNADKDFNLKTANPVGFGSAPIVAVI KKNKKSIEDLAEWLENNNQQDINRLGKIDRSILFIDDEADNATVNTKKTEDPTTINLGIR AILNLFQRASYVGFTATPFANIMIDHKNKDDLFPSSFIQVLDTPTNYMGASTIFPEKDEG GIYHSILISNDDAEDYIPIVIPKEDRATFEVQGLPPSMEEAICVFFLQNAIRDLRGDQKK HRSMLINVSHLNRIQDQIKLLVDAYVGELKRQIRHYILDTEKSIHLDMKAIFKEKFNNIP ESWEDVYPTLYKSTDTIETHVINNANKGFQYEDYPNGARVIAVGGFALSRGLTLEGLSTS YLYRNTLMYDTLMQMGRWFGYRPRYDNIVYLYMPERSVDWYYQILQAMNDLKKQIKEMIN EKKTPEDFGYYIREAENRDEATILITARNKMRSARNHDVTIRISGDYKETSKLSINVASR NSNLIEKWFEKNKLLFDSDLLIKDAPKEVAERLLLEYAYGSYNQLNLSVSKEALNNFDKF DIKIGARLGASIDFNSIKEKSRTRAFRYVKEFDLIAFGNSRIGSVRDGQYGLTKQQKEFA KSFKTEKEYFSDFYSNERNPLIVIFPVSLPEPKNADKISHDFWEKNKDNVFWALSLGIPN SDLAPISYKTKMNTVLQQQLLTQRELEAEDEIEEDIE >gi|307679277|gb|GL456450.1| GENE 187 186683 - 188134 516 483 aa, chain - ## HITS:1 COG:no KEGG:Acid345_4266 NR:ns ## KEGG: Acid345_4266 # Name: not_defined # Def: hypothetical protein # Organism: A.bacterium # Pathway: not_defined # 7 469 36 507 529 347 39.0 7e-94 MSSFYELVPDASNLIESQRSVGYTFETAIADIVDNSVSANATRIDINFNNQQKYVSILDN GYGMSKIELLQAMKYGSRSIYDLRTQDDLGRFGLGLKMASFSQCRKLTVVSIKDGEYSGA VWDLDVVKKKNAWIVQILNDEEIRNTHRFSELGILSSGTLVIWEKFDKLEQYADFKFNFD ESLEKTENHLSLVFHRFLQENQIDIFFNQRAIDFVDPFFISNKATQPKSSDVIFENSRNA RIDIKPYIVPYQKRLSQKERHVLKKFEHCKLGPGLYIYRNRRLIAWGKWFRLVRPNELAN LARIQIDIPNTIDDLWEIDVKKSQLNIPTSLRTQLRNVITKSIGESERVYKYRGTKRNKD NLQYVFDRVEKDNKVAYYLNMENPLIKQLQENLSDSDIIIFKALLKQIEEHLPLDSIQYD LASNKGFEENEDTDDEIYEEIMLLLSNQTTEKSKKLLLNSLKYSEVYSKKIALLARIERE LNG >gi|307679277|gb|GL456450.1| GENE 188 188127 - 189284 513 385 aa, chain - ## HITS:1 COG:UU528 KEGG:ns NR:ns ## COG: UU528 COG0270 # Protein_GI_number: 13358092 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Ureaplasma urealyticum # 118 376 16 294 299 157 39.0 3e-38 MLKVVEAFSGIGAQKQALEKLNIEHEIINTIEWDINAIYAYDIMHHNDNSPSKLSKHEII ERLANVTLSPDGKKPFSDNGLYRIKEEKLQKLYAAIRRNNNLCDITQVSGDMIPDDTDLL TYSFPCQDLSIGSVWYNKDNDGIRKGAKTRSGLLWEIERILRERIMINVPLPKFLLMENV NAITSPKHNPNFVQWQEELESMGYTNKVYKGLNALDFGVPQSRSRTFMLSIRNKDIEPEE ISNLNYNIQSNLGDYLRFNHKEEIIEATPNYTPSRIKIYNQNRLLAKNGVVKADFTNTIS TKQDRNPNAGVILQDDRMRYLTPRETFLLMGFPECKFEKLMKSNEGNSYFTNSHLYRMSG NSIVVDVLTKIFQEIERLKGIYFNE >gi|307679277|gb|GL456450.1| GENE 189 190709 - 191068 349 119 aa, chain + ## HITS:1 COG:pli0060 KEGG:ns NR:ns ## COG: pli0060 COG0640 # Protein_GI_number: 18450342 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 1 118 1 118 119 128 62.0 3e-30 MKNEICEISCVHEDKVLLGKEKLQTEDISSLKSVFKILADENRLKIIYALSYEDELCVCD IAATIEASVATTSHHLLSLKKNGIVVSRKVGKLVYYSIKNDKFVQLLNSKLYLEDEVLV >gi|307679277|gb|GL456450.1| GENE 190 191065 - 193182 2002 705 aa, chain + ## HITS:1 COG:pli0061 KEGG:ns NR:ns ## COG: pli0061 COG2217 # Protein_GI_number: 18450343 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Listeria innocua # 1 703 1 705 705 983 75.0 0 MSEKKQVYRVEGLSCTNCAAKFEKNVSQIPKVTDAKVNFGAGKISIEGEATIAEIEAAGA FENLKVQSEHDTEPRIETKEPFVKRNWNLLVSLFLIILALGSQVVNGEDALLTEGLFILA IIIGGFSLFKEGFSDLLKLNFSMESLMTIAIIGAAIIGEWTEGSIVVILFAISEALERFS MDKARQSIRSLMDIAPKEALIRRNNVEQMINVSKIEVGDIMIIKPGQKIAMDGQVIKGHS SVNQAAITGESVPIEKNINDDIFAGTINEEGALEVKVTKHVNDTTIAKIIHLVEEAQGER APAQAFVDKFAKYYTPTIMVIAALIVIVPPLFFNGDWNTWLYQGLSLLVVGCPCSLVIST PVSIVSAIGNSAKNGVLVKGGIYLEEIGGLKAIAFDKTGTLTKGTPTVTDFTTVDSKDEE KYFSIITALESYSQHPLASAILKEADNRAISYKSVVVDEFTSITGKGIQGNIEGITYLVG SPKLFESILTDNSKIIENYQRLQQQGKTAMLLGTDKQILAVIAVADELRESSKAVIEKLH DLGIEHTIMLTGDNATTAQSIGKQTGVTEIKGDLMPQDKLDYIKSLKETYGKVAMVGDGI NDAPALAASTVGIAMGGAGTDTALETADVALMGDDLQKLPFIVKLSRQTLRIIKQNITFS LGIKLLALLLVVPGWLTLWIAILADMGATILVTLNGLRLMKVKSK >gi|307679277|gb|GL456450.1| GENE 191 193403 - 194215 683 270 aa, chain - ## HITS:1 COG:SP1130 KEGG:ns NR:ns ## COG: SP1130 COG1396 # Protein_GI_number: 15900996 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 1 70 1 69 282 61 50.0 1e-09 MEIDKQAVGNRIRQIRQELKLSMEKFGKLIGDLPRSTVNNWERGINLPKTETLHQIAEIG HVTNEYLLYGTQENQYILEMLQKKAGKLDPKIEGLIVDELKQAGLVSEKEMDRMIEFFII NLIPPTEQDQFTYQCIDEKKQLYLGSTKFGKEAQLYLHHDNQNHILHILPFTFSNFSVDR LLVYLANQESYSYFGKHLPKELGEKVILLYSINQLTGDVRITPLVYSKETASYQYTEDNL YLLEQQYLYLPFAMEIEKERLLNAAYPQSK >gi|307679277|gb|GL456450.1| GENE 192 194377 - 195633 936 418 aa, chain + ## HITS:1 COG:BS_ydcR KEGG:ns NR:ns ## COG: BS_ydcR COG2946 # Protein_GI_number: 16077554 # Func_class: L Replication, recombination and repair # Function: Putative phage replication protein RstA # Organism: Bacillus subtilis # 71 385 31 346 352 189 32.0 9e-48 MNQVNQRDLGEAIRVSREERGWTQRYLAEKVGISRSLLSKVEKGTRRLSAEKLNLVLDSL QEEIVPVNRVLIDYLTIHFFSNQHLKLIEEIIGMPIERFEELDYAPKGYIGQYVWNQVIT IRYSIDDTVKGTVMEFSGQGCKHLAMRLKTAKSNWQEFFRKVLDYQGNFTRIDFTLDDFV GSLSIPELKRKVTLGHVWTTFQVSESHGGTDIINNESNGETLYLGSKKSQCRFCFYQKDY EQRKRRGISLEEAEVKNRFELRYRKEKAQSLAKIISKTHDLTKLFFELLNGAICFYDRAP NDPGAKVDAKWAAFIGNHGAITISLETIPQSFEKSMNWLIHSVSPTLAFIQEVDNHFDSN LINEIISCGELSSRQQKFLENLIAEPDYYQEEVEFYIQCLQNMKKEKIHKKSKAQLTH >gi|307679277|gb|GL456450.1| GENE 193 195723 - 195920 254 65 aa, chain + ## HITS:1 COG:no KEGG:LACR_2581 NR:ns ## KEGG: LACR_2581 # Name: not_defined # Def: hypothetical protein # Organism: L.lactis_SK11 # Pathway: not_defined # 11 65 8 62 63 81 70.0 1e-14 MKNTITTYELPYLLTREQASQFLGIDPKSFDKFVRANDELERFMIGRQERYTVTSLISFI KTHSI >gi|307679277|gb|GL456450.1| GENE 194 196026 - 197072 737 348 aa, chain + ## HITS:1 COG:L36404 KEGG:ns NR:ns ## COG: L36404 COG0582 # Protein_GI_number: 15672990 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Lactococcus lactis # 1 346 1 374 374 116 26.0 7e-26 MPSIIKRGNSYRAQISLYNHGQHKKLTKSFSSKKEATRWALENELEKGNGKQLAERTTTF ADFFENWIHIIKKNDVKETTFQNYQRTSQVVKKLFGDIQLKDLNDIVVQRKIDKYAETHS RKTTHEVLLKIKTALRDAYARGYLATDFANLVKTRGKVLDKRNRALSITELKKLRTYVIN HRENEFNILVLLALETGMRRGELLGIRPEDLFEYGIHVRRSLSPTSEDTSLKTKNSRRDI SINQEVYDILKSVPIKDNGYFFDPDGFQQSAKLARLLKKLDIPKTTFHGLRDTHASFLFS QDIDIAYVSKRLGHINIQTTQNYYLELMPEKKHQQDADALNLLNSLSN >gi|307679277|gb|GL456450.1| GENE 195 197132 - 197524 653 130 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29377675|ref|NP_816829.1| 30S ribosomal protein S9 [Enterococcus faecalis V583] # 1 130 1 130 130 256 99 8e-67 MAQVQYSGTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLREVINQPFGVTETKGA YDVIVNVNGGGYAGQSGAIRHGIARALLQVDPDFRSALKRAGLLTRDARMVERKKPGLKK ARKASQFSKR >gi|307679277|gb|GL456450.1| GENE 196 197538 - 198083 930 181 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227517177|ref|ZP_03947226.1| ribosomal protein L13 [Enterococcus faecalis TX0104] # 1 181 1 181 181 362 99 6e-99 MIEGKILNGIVCPTMSPGNSSVCQTSKTKLEERNVRTTYMAKAGEVERKWYVVDATDVPL GRLSAVVASVLRGKNKPTFTPHVDTGDFVIVINADKVKLTGKKATDKIYYRHSMYPGGLK SVTAGELRDKNSRRLIETSVKGMLPKNTLGRKQFTKLNVYGGAEHPHAAQQPEVLDITNL I >gi|307679277|gb|GL456450.1| GENE 197 198203 - 198670 580 155 aa, chain - ## HITS:1 COG:SPy1531 KEGG:ns NR:ns ## COG: SPy1531 COG0783 # Protein_GI_number: 15675430 # Func_class: P Inorganic ion transport and metabolism # Function: DNA-binding ferritin-like protein (oxidative damage protectant) # Organism: Streptococcus pyogenes M1 GAS # 2 153 24 175 175 174 51.0 8e-44 MKFEKTKEILNQLVADLSQFSVVIHQTHWYMRGPEFLTLHPQMDEYMDQINEQLDVVSER LITLDGSPFSTLREFAENTKIEDEIGNWDRTIPERMEKLVAGYRYLADLYAKGIEVSGEE GDDCTQDIFIANKTDIEKNIWMLQAKLGKAPGIDA >gi|307679277|gb|GL456450.1| GENE 198 198798 - 199517 641 239 aa, chain - ## HITS:1 COG:no KEGG:EF3234 NR:ns ## KEGG: EF3234 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 239 1 239 239 339 97.0 7e-92 MKKQLLPLFLLFIGALASCSAPSRSGEKAAQQLVDYFIYQEKPATFSQTFREPKVLAEHL QTSRQQFQKQFFNSLKEMNAEVTETEAQKLSAELLAQVKKKASYQLVATKELNGQATITF QIKGLDFVTAIEDTTTALLQQTQQATQALDMQHTLAVLKKEIQQINVSHEPVELPLTVKQ VEGQWYLPAAEQLRLNQFFLAFVTGKEDTDQLTEALDTILTQAEQKVVTADEKTAISGN >gi|307679277|gb|GL456450.1| GENE 199 199601 - 201121 1419 506 aa, chain - ## HITS:1 COG:BS_gntK KEGG:ns NR:ns ## COG: BS_gntK COG1070 # Protein_GI_number: 16081058 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Bacillus subtilis # 1 506 1 507 513 416 41.0 1e-116 MEKLAIGVDVGTTQAKAVAFQANGTVVASSYVRYPLIQETEGMAEQDPETLFQAVVNCIR TVTQQVKNQPIGLISFASAMHGLIAMDAQGRPLTQVITWADTRASDYAEALKETPAAQLF YQLTGMPVHPMAPLYKIRWLQENQPAVAQSAAKFIGIKDYIFYRFFGEYWTDYSSASGMG LFNIHTRQWESSILAYLSIEEEQLPKVAPSTFIFPALAPSWQEMLGVEEETVLVLGGADG PLSNLGLGALGMGVATLTVGTSGALRYIVEEPFLHPQGETFCFALDEQHWVIGGASSNGA VALDWASQTIFAEERQQAIRNGTNLYDPIMAKIATVPAGANGLLFHPYLLGERAPLWNAE ANASFIGLRKNHHAGHLARAVVEGICFNLKTILEDLKQLGGPVQEIRATGGFADSPVFRQ IMADVLGETLSFTDSTEASALGAVLLGWQGLGQLPNLQAAAQQVLIHETVTPRADQLLVY QELYPVFQETQQVLAQSYQKLAEFRK >gi|307679277|gb|GL456450.1| GENE 200 201606 - 201974 167 122 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSVQLDTPKIYSCSHRLGHNYWQKIVASATEVPVKNSPTNPVTKDPLAPWLPENNVRRLG KNKNKKDQSVSKTNADPPLSASKAQKNGGGEKKKKKKKKKKAKKKKKTMAPPPLSASKAQ KN >gi|307679277|gb|GL456450.1| GENE 201 202076 - 205729 4620 1217 aa, chain - ## HITS:1 COG:lin0286 KEGG:ns NR:ns ## COG: lin0286 COG0086 # Protein_GI_number: 16799363 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta' subunit/160 kD subunit # Organism: Listeria innocua # 1 1202 1 1201 1201 1930 79.0 0 MIDVNKFESMQIGLASPEKIRSWSYGEVKKPETINYRTLKPEREGLFCERIFGPTKDWEC ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM SPRALEEVIYFASYVVIEPGDTTLEKKQLLTEREYREKREQYGQAFKAAMGAEAVKQLLD NVDLDGEVAQLKEELKTASGQKRTRAIRRLDILEAFRASGNQPSWMVMDVIPVIPPDLRP MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPSIIVQNEKRMLQEAVDALIDNGR RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPFLKMYQCGLPKE MAIELFKPFVMRELVQREIATNIKNAKRKIERGEDEVWDILEEVIQEHPVLLNRAPTLHR LGIQAFEPVLVEGRAIRLHPLVCEAYNADFDGDQMAVHVPLNEEAQAEARMLMLAAQNIL NPKDGKPVVTPSQDMVLGNYYLTMEEEGREGEGMIFRDMNEAVLAWQNGYVHLHSRIGVQ TTLLGDKPFTDWQKERILITTVGKIIFNEIMPVEFPYLNEPTDYNLTVQTPDKYFVEAGT DIPTHIKEQELVLPFKKKNLGNIIAEVFKRFHITETSKMLDRMKDLGYKHSTYAGMTVGI ADIMVLHEKQAIIDAAHKQVETITKQFRRGLITDDERYERVIGVWNGAKDEIQQKLIESM EARNPIFMMSDSGARGNISNFTQLAGMRGLMAAPNGRIMELPIISNFREGLSVLEMFIST HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLEIEAIREGNEIIEPLD ERLLGRYTRKSVVHPETGAIIIGADQLITEDLAREIVDAGIEKVTIRSVFTCNTKHGVCK HCYGRNLATGSDVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF EARNPKGQAVITEVTGEVIDISEDPATRQKEVTIKGKTDTRTYTVPYTARMKVAEGDIIH RGAPLTEGSIDPKQLLQVRDVLSVENYLLREVQRVYRMQGVEIGDKHIEVMVRQMLRKIR VMDPGDTEILPGTLMDIAEFKDRNYDTLVAGGVPATSRPVLLGITKASLETNSFLSAASF QETTRVLTDAAIRGKKDPLLGLKENVIIGKIIPAGTGMARYRNMEPKEVGVASENVYSIS DIEAQMAAEDAMKNINK >gi|307679277|gb|GL456450.1| GENE 202 205896 - 209510 849 1204 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163796927|ref|ZP_02190884.1| 30S ribosomal protein S12 [alpha proteobacterium BAL199] # 725 1140 906 1387 1392 331 43 1e-89 MAGHVVKYGKHRERRSFARISEVLELPNLIEIQTDSYQWFLDEGLREMFEDILPIDDFQG NLSLEFVDYELKEPKYTVEEARAHDANYSAPLHVTLRLTNRETGEIKSQEVFFGDFPLMT EMGTFIINGAERVIVSQLVRSPGVYFHGKVDKNGKEGFGSTVIPNRGAWLEMETDAKDIS YVRIDRTRKIPLTVLVRALGFGSDDTIFEIFGDSESLRNTIEKDLHKNASDSRTEEGLKD IYERLRPGEPKTADSSRSLLTARFFDPKRYDLANVGRYKVNKKLDLKTRLLNLTLAETLV DPETGEIIVEKGTVLTHQIMETLGEYIDNGLNSVTYYPSEDAVVTEPMTIQVIQVLSPKD PERIVNVIGNGYPDDSVKTVRPADIVASMSYFFNLMEDIGNVDDIDHLGNRRIRSVGELL QNQFRIGLARMERVVRERMSIQDTETLTPQQLINIRPVVASIKEFFGSSQLSQFMDQTNP LGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYAK VNKFGFIETPYRRVDRATGRVTDQVDYLTADIEDHYIVAQANSLLNEDGTFANDVVMARL QSENLEVAVDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIQPRSP WVGTGMEYKSAHDSGAALLCKHDGVVEFVDAKEIRVRRDNGALDKYMVTKFRRSNSGTSY NQRPIVHLGEKVEKGDTLADGPSMEEGEMALGQNVLVAFMTWEGYNYEDAIIMSRRLVKD DVYTSVHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVQDGDLLVG KVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTREAGDELSPG VNMLVRVYIVQKRKIHEGDKMAGRHGNKGVVSRIMPEEDMPFLPDGTPVDIMLNPLGVPS RMNIGQVLELHLGMAARQLGIHVATPVFDGATDEDVWETVREAGMASDAKTVLYDGRTGE PFDNRISVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALE AYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQSLGLDMRV LDIEEAEIELRDMDDDDDDLITVDALTKFAEQQSAKQLEKEAESVVKEEAQDVVQEIETA EDRD >gi|307679277|gb|GL456450.1| GENE 203 209881 - 210222 304 113 aa, chain - ## HITS:1 COG:DR0417 KEGG:ns NR:ns ## COG: DR0417 COG2337 # Protein_GI_number: 15805444 # Func_class: T Signal transduction mechanisms # Function: Growth inhibitor # Organism: Deinococcus radiodurans # 7 105 5 103 117 77 36.0 8e-15 MNVEKKYIPKKGDIVWIDFDPAAGKEIQKRRPGLVVSRYEFNRKTMFAAICPITSTIKNI PTRYTLPDDIETQGQVVISQLKSLDFTERKLSQIEHLPLKDMAKIDQIIEYIF >gi|307679277|gb|GL456450.1| GENE 204 210222 - 210452 305 76 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|307288305|ref|ZP_07568301.1| ## NR: gi|307288305|ref|ZP_07568301.1| toxin-antitoxin system, antitoxin component, AbrB domain protein [Enterococcus faecalis TX0109] toxin-antitoxin system, antitoxin component, AbrB domain protein [Enterococcus faecalis TX0109] toxin-antitoxin system, antitoxin component, AbrB domain protein [Enterococcus faecalis TX1302] # 1 76 44 119 119 150 98.0 3e-35 MLTTKSRRQGSSVVLTLPTDNGKKPKVDQEYIVMYSDDGTITLVPKIQDPFSEGPEGEYY EKDEWHDLAPEGRELF >gi|307679277|gb|GL456450.1| GENE 205 210858 - 211073 313 71 aa, chain - ## HITS:1 COG:L121994 KEGG:ns NR:ns ## COG: L121994 COG3478 # Protein_GI_number: 15672697 # Func_class: R General function prediction only # Function: Predicted nucleic-acid-binding protein containing a Zn-ribbon domain # Organism: Lactococcus lactis # 3 70 5 72 72 99 76.0 1e-21 MEKQQYVCEKCGNMHYVSDQFQATGGNFAKIFDVQNKKFITISCTQCGYTELYRSQTSGG MNVLDFLLGGG >gi|307679277|gb|GL456450.1| GENE 206 211212 - 212204 1045 330 aa, chain + ## HITS:1 COG:SPy1362_2 KEGG:ns NR:ns ## COG: SPy1362_2 COG0340 # Protein_GI_number: 15675294 # Func_class: H Coenzyme transport and metabolism # Function: Biotin-(acetyl-CoA carboxylase) ligase # Organism: Streptococcus pyogenes M1 GAS # 81 321 2 235 240 198 44.0 1e-50 MSTKSQVLTLLMKQTPAFLSGEEMAQRLSLSRTAIWKAINELKKDGYQITSVQNKGYRLE KSDVLSAEGIQLALWPQTPPLTITVPETSESTMTDAKRAILDQTPDNTLIVADMQEMPRG RFGRPFFATPGKGIYMSMVLQPNQNFEEIAQYTVIMAVAVARAMDALAGVQTEIKWVNDL YLNGKKVCGILSEAMSNVETGQISNVIIGMGINFSITETEFPEDIRQKVTSLFPDGEPTA TRNELVANIWNHFYQILDERSTKDFLEEYRQRSFVIGKDVAFTQNGQDFRGVATTINGNG ELIVQLPDGTAKTLSSGEISLDQIGEWRRG >gi|307679277|gb|GL456450.1| GENE 207 212468 - 213106 598 212 aa, chain - ## HITS:1 COG:L11456 KEGG:ns NR:ns ## COG: L11456 COG3397 # Protein_GI_number: 15673933 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 1 211 1 206 220 149 40.0 3e-36 MKKMMLFIIAVGATMISVFALGDAQQSYAHGYVDSPVSRVKNAEANGFGWGPGQDSSQPE IITTPQGIEAPTKLLDTGQLNGRLPSAGLASYSKLDEQTATRWVKSNITTGENNFKWVMT AKHKTNRFRYYMTKPGWNPNAPLTMDEMELIGIVGQPIGQDLPPGQGFMVNDTETHRIKI PADRKGYHVIYAVWDINDTINSFYQAIDVNVQ >gi|307679277|gb|GL456450.1| GENE 208 213793 - 215409 1364 538 aa, chain + ## HITS:1 COG:BH3670 KEGG:ns NR:ns ## COG: BH3670 COG1316 # Protein_GI_number: 15616232 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 237 530 10 304 304 207 41.0 6e-53 MQTSNKKFPLYALTTLGFTFLTLLVAASPNWFQQMDEAIYHIKWQLNAPLLTAVNLLAKT ATIGPMLLFFLLLMVYLLRKKEKILAFWAVSNLLAVGFLGSVFKHVVGRARPNLGALADR SSASFPSGHSLLAMALVCTILIILAYLHVEKTKGIKIFLLTYLVLIVLGRLILRVHYPSD VIAGMLLSYSWINFSFQIVQRYLPAPEPEEAEVPTQRRRRHSRKRKSLFVVFSLTLLFLG TLSVSAYGVSMYRNLQKTANTMYKPRKSSTKSPDLAKGEPVSFLIMGIANDSKRKTDYRS NALMVVTVNNQLQKTTITSIPRDYYVEMAGTNGEYNKINAAHVFGGADMQIKTVENVLHI PINHYFSIDMDAMKDLGDAVGGVTVDNAFAFDAEGIHYPKGKQHLGGWEALQYARMRYED PEGDYGRQRRQREVLIELTNKLLSFNSLLKYQEILDVIGEHGETDLSFDQMMAMLKKYTP ALKTIETDQLKGYDYTGDGVTGIEGISYQLVEESERQRVENAIKEQMNLSTKDTEQSQ >gi|307679277|gb|GL456450.1| GENE 209 215681 - 215824 185 47 aa, chain + ## HITS:1 COG:no KEGG:EF3247 NR:ns ## KEGG: EF3247 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 47 19 65 65 81 97.0 1e-14 MHVFPKFRERRGLLSAYETIQTILGFGMFTIALIALIVKLLKNDKKK >gi|307679277|gb|GL456450.1| GENE 210 216416 - 216520 122 34 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSIAEALALMISFGSFIATLIFGILEAVKKDNKK >gi|307679277|gb|GL456450.1| GENE 211 216715 - 220590 3238 1291 aa, chain - ## HITS:1 COG:no KEGG:EF3075 NR:ns ## KEGG: EF3075 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 328 1291 451 1426 1426 869 54.0 0 MKQIKFKQLATFGLCCSLLGNSLTGVTAVAETVTIESSPTAESTKESPKERTETSEATTE TSREEATQETEKQEKGKEAETEAAQVGVEQEETETSEVIQPDSVLLPASGIGVQAGNLAS VHEQVASMGIPTRGRVTITVPDIRLGIGLNSLDKVTLNTADFDIVAKGRTVTTRGLAGGN FQSYLGTVIDFGTSKTNNSLDILIPSRTITAKYTAPYVFDGSVYYMNPINLTVPKYIKAI SIKDNQTYNTFYIRRGFTYGVYAGSVNPTITKKSEVNYELSSDVSYNVSGDTLTRIFYSR VDNVNPEGQNSFQVSLPKQDIVVNVENRKVTENFKDVNGTAIPAPTDFTQGKQTSITNND YTFTQEGTLPDTYTADGKTYKFKGWYKGKTKPETLETSKTPSYKVTYDDNDDLNVVYGET EAFEFPALTYQFGFVDESGQRVDASTIGLTYDNWYGELLTDNVADWQTITLEKGQVAPTK NNLKEITYPAQALERVAGRTSQYSAANLTFTLPKYYEKISVYNKTGTFDSAYPFPNIQVS SGSSIGSNAAKNFELKEAGSQSFVFNQPTAAAPVDIQVPAYLREVVYNPASTPTEAVYYT IDKPVYYYLTNRKVTENFVDASGAKITAPTGFKQGKQTVIDSDDFTYTQEGTLPYIYKIN NKPYVLKGWYKGKEKPEKLNQITKEKPNISYPVSYDDQDDVTVVYDELKLAGNTIQFGFV NEQGNYIPPTSKFNVSTDIGEVTNATYAKLQTVNSTINGNYLSLTIPAYNPTGGIGQGTE YYGSRNSIVTIPNYYKPPTLTPPSNYNGTVYPTATGVVDYHDAATYAYLPSRLNLTPVSS SQTNYRLPQAIWTDEETKTAFSSLYKMNATSTSDTTMGLAEIYATGTVNYYLENRRVTEN FVDDTGAKITPPTDFTQGKQPVIDSDNFTYTSAKALPASYTADGKSYVLQGWYKGTEKPT TLETSKTPSYSVTYNDQDDLTVVYKEGTISADLTMRGAVDVIDNGAPMEYWEVLLKNTGE VPLTSIKINPTTDWMSGISTPTELFILGTGQNAKARPITKEQWEAGFDIPLDSSLPVGGQ LTINLIGTKVTGQPGQVLKAAVEVTGNFGNLKASDTVRIKDLDQEIKEPTGEGFISVPTF DFGQVGVASATKQHGLKKAADYYGNGTRNPYVRISKTQPNWSLTAQLSQPKSATDSLPTA TRLLLGAAPVSSFSNYNQPTELKNAIGTTNAIHLTANNAATSIIANQQFTGSDVYQLDFT FDNIKLEVPANQGTAGQQYQAAVTWNLVTGP >gi|307679277|gb|GL456450.1| GENE 212 220571 - 220939 322 122 aa, chain - ## HITS:1 COG:no KEGG:EF3076 NR:ns ## KEGG: EF3076 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 120 1 120 120 177 85.0 1e-43 MKKKRYLMIVCLLSSPSFFINVEASDGGSSSVGIEFYQNPTTPAPKDAPPKTDAPATDPK GPAGPPQGDQRSGGSTQTTTTGSKLPSTGSKSQANLSILGLALIGLVGIVHRKKERHETD KI >gi|307679277|gb|GL456450.1| GENE 213 221326 - 222273 872 315 aa, chain - ## HITS:1 COG:L112353 KEGG:ns NR:ns ## COG: L112353 COG1575 # Protein_GI_number: 15673645 # Func_class: H Coenzyme transport and metabolism # Function: 1,4-dihydroxy-2-naphthoate octaprenyltransferase # Organism: Lactococcus lactis # 1 313 1 313 319 303 54.0 2e-82 MSLNVFLKVVEIQTKLASLFPFIIGVLFSMTYFGEVQWCNTLVFFIGMVVFDMATTAINN YMDFKKAKSDVYKYEENIIGQSGVSPQLVRNMIFAMIAFTAVVGAYLTVQTGWLFLVLGG ICCFIGIFYTYGPIPLSRMPLGEIFSGFTMGLGIFVLTVYLNVVTNPPFYLTVDFASGAF HLDGNLWAVLAIVVASLPLVCSIANIMLANNLRDLDTDIENHRYTLVYYIGRPAGIVLFQ VLALAGYLVILFGFISGIYQWPVLITFATLPVIWKNIQTFKQELPQPKSFRHSIKNLLVF NGTYALGLLISALLG >gi|307679277|gb|GL456450.1| GENE 214 222287 - 223354 1299 355 aa, chain - ## HITS:1 COG:lin2785 KEGG:ns NR:ns ## COG: lin2785 COG1477 # Protein_GI_number: 16801846 # Func_class: H Coenzyme transport and metabolism # Function: Membrane-associated lipoprotein involved in thiamine biosynthesis # Organism: Listeria innocua # 3 340 2 348 360 376 56.0 1e-104 MKKKLLLMVSVLAVLFVAAACSSKPEAKINTEPYSDRQTMLGTYVQIRIYDDGKEDVLPK AFARVKELGDKITVNQPGSEIDEINQEAGVKPVKVSDDLYPLLKKAYEYSKDSRGGFDMA IGPITSMWHIGFDDARKPSQAEIDQALKLVDYTKVKFNDKEQTVYLEEKGMQLDLGAIAK GFITDEVVKVLKDNGVTTAIVDLGGNVYVLGHSPRGKDMDWTVGIQDPNKARNTVLGQVK ESNKTLVTSGIYERYLKVDGKTYHHLFDRETGYPFDNDIAGVTIITDKSIDGDGLSTAVF SMGVKKGLEYVESLKGTDAIFVTKDDKVYISKDIEGNFEIGKDSGYTMGNRADLK >gi|307679277|gb|GL456450.1| GENE 215 223610 - 224539 1115 309 aa, chain - ## HITS:1 COG:lin2786 KEGG:ns NR:ns ## COG: lin2786 COG4939 # Protein_GI_number: 16801847 # Func_class: S Function unknown # Function: Major membrane immunogen, membrane-anchored lipoprotein # Organism: Listeria innocua # 1 307 1 296 299 222 50.0 6e-58 MKVNKFVKGFAAIALFSLVLAGCGADKKDNTTNSSSAASSETKKSTESSAPAKKVAGGDL KDGTYKLEEKNEKNGYRAVFEMTVKDGKITESKYDNINADGKSKTEDTKYEESMKAKSGV GPKEYIKQLNDSFVKAQSASGVEVVTGATHSSESFQNYAQQLIQAAQAGNTDTIEIDNGA TLKDGTYSLKEKNDSNGYHTTFSMTVKDGKVTESNYDNVNADGKSKKDDTEYESKMKDVT GVGPKEYIETLNKEFVKAMGEEEGSPAGVEVVTGATHSTHSFINYAQQLVNAAEKGDTTE IVVDNIVTK >gi|307679277|gb|GL456450.1| GENE 216 224817 - 226763 2135 648 aa, chain + ## HITS:1 COG:L41335 KEGG:ns NR:ns ## COG: L41335 COG1252 # Protein_GI_number: 15672811 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase, FAD-containing subunit # Organism: Lactococcus lactis # 1 648 1 666 667 717 57.0 0 MTKQNIVVVGAGYAGVSATKFLAKKFKKDTDVTITLIDRHSYHTMMTELHEVAGGRVEPE AIQYDLQRLFSRKKNVKLVTDTVTGIDKENKVVKTLAGSYPFDQLILGMGGEPNDFGTPG VKENGFTLWSFDDAVKIRHHIEATVAKAAIEPDAEVRKAMLTFVVCGSGFTGIEMVGELI DWKDRLAKDAKIDPDEITLMVVEAMPTILNMLSRNDAAKAERYLEKKNVQLLLNSPIVEV AADHIKLKDGSEVPTHTLIWTAGVKATSDAADFGLEAARGSRLVANEYMQAKGYEDKNIY IIGDLVYYEETPNTPTPQIVQAAEQTGHTAAANIVADIKGGEKHAFKGNYQGFMVSIGAK WGVANLFDKIHLSGFLAIIMKHIVNLKYFFDIRSGYYMFQYIMHEIFHIKDDRSVARGHT SRYGNVLWSVPLRVFYGMVWLVESMKKIVGNGDYLKPSTWFGDGSWFTDKVVFPFPWLQE QVTTGASQATETATTAASGAADAAASGGADAATQAAHFGLSYAYGETPMQVFDHMPKWFE SVMKFMMPNQEVALFMQKFMTIVEVCIALALIAGLFTWLSSAATIGLTIAFCLSGMFYWV NIWFIFVAFALMNGSGRAVGLDRWVIPWIQRKLGKAWYGTPKARYGGK >gi|307679277|gb|GL456450.1| GENE 217 227292 - 227714 474 140 aa, chain + ## HITS:1 COG:L178600 KEGG:ns NR:ns ## COG: L178600 COG5341 # Protein_GI_number: 15673322 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 6 140 10 133 135 100 45.0 6e-22 MTIKEFIKKSLLKTWDVIIIAILVLGSFLPLVVFAMQNRGQEAATYQAVLKVDNKVIKVF DLKKDGPHYTYKYEAKDGDYNLIEVDGDRIRVKEANCADLVDVRRGWISKPGETPIACLP HNLFITVEASDGSEDGSLIY >gi|307679277|gb|GL456450.1| GENE 218 227726 - 228283 575 185 aa, chain + ## HITS:1 COG:lin2789 KEGG:ns NR:ns ## COG: lin2789 COG4769 # Protein_GI_number: 16801850 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 1 169 1 169 180 207 64.0 9e-54 MSKLHKNIYIAMLVAQGVIIGLIENMIPYPFAFAPGAKLGLANLITIIAIFTMRKRDSFF LVCLRLILTTLLGGTLSTFFYSASGALLSYFGMLLVKQLGPKRVSIIGISAVGGFLHNVG QLLTTSFFAHSWAPMLYLPFLSLFGLLSGIAIGIAANYLLQHVQTLRKFQLNYEQTTKHK WSQFF >gi|307679277|gb|GL456450.1| GENE 219 228321 - 229307 1046 328 aa, chain + ## HITS:1 COG:lin2790 KEGG:ns NR:ns ## COG: lin2790 COG0142 # Protein_GI_number: 16801851 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Listeria innocua # 1 327 1 325 326 334 48.0 1e-91 MNIHPMWNTYPTLSKELTTTLRLMEQAVQIDNQEIQAAVHDMIHSGGKLLRPAYQLLFSY FGEQRDPKKATALAASIELLHTATLVHDDIVDEADTRRGLPTLRSRFGNSTAVYTGDYLF VCCFKLLSDYSSSLKSIQLNSRSMEKVLTGELGQMDNRYNFEVTIDQYLKNISGKTAELF ALSCFVGAYESGTSQRFAKRCGEIGENIGLAFQIIDDILDYTQTADAIGKPVLEDVRQGV YSLPLIYALEANREVLLPLLMKKEALTDEETQEIYRLVHELGGVEKAQELATHYTEKALK EISKLPETKAQAKEQLYEITQTILTREN >gi|307679277|gb|GL456450.1| GENE 220 229374 - 229622 298 82 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229547905|ref|ZP_04436630.1| acetyltransferase including N-acetylase of ribosomal protein family protein [Enterococcus faecalis ATCC 29200] # 1 74 1 103 204 119 60 9e-47 MIEFKNILDSLVERGATMTFLQWYSHTTLSEMWAFYEKTITHHPYYLAICLKDKENSCPI GYVKAEMNDSHDFGTSKGVSSA >gi|307679277|gb|GL456450.1| GENE 221 230309 - 231121 548 270 aa, chain + ## HITS:1 COG:RP259 KEGG:ns NR:ns ## COG: RP259 COG1680 # Protein_GI_number: 15604129 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Rickettsia prowazekii # 18 198 143 319 414 85 29.0 9e-17 MEMPVVAFFPDLLIPKAITVKHLLTMSSGLPDYPTELFLNSLKKIKEQRPELNEKLQEFY AEFATAEQISFNKLKTIIATKPMDFQVGTRVSYSNTNYYLLGLIIEKVSGLSFEKFVTQK ILSPLSMVKTSFATQNSIARSYRNIDNELHEFPNTYQLLSADGCMVSTINDLSKWLQAVL KGEILSPESWDQVFNLYLKEYNCGWMKLGDWFYHDGQYLGFYCEIFLHRKAGLGKVMLYN REATSELDQYSMDERSNWRNLIRDWSFSQN Prediction of potential genes in microbial genomes Time: Tue Jul 5 20:27:09 2011 Seq name: gi|307679276|gb|GL456451.1| Enterococcus faecalis TX0411 genomic scaffold Scfld158, whole genome shotgun sequence Length of sequence - 603 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 6 - 78 88.0 # Val TAC 0 0 + 5S_RRNA 10 - 66 92.0 # AF302131 [D:490..741] # 5S ribosomal RNA # Streptococcus agalactiae # Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus. + TRNA 85 - 157 88.6 # Lys TTT 0 0 + TRNA 174 - 255 71.9 # Leu TAG 0 0 + TRNA 262 - 337 98.3 # Thr TGT 0 0 + TRNA 342 - 413 85.5 # Gly GCC 0 0 + TRNA 429 - 514 68.1 # Leu TAA 0 0 + TRNA 529 - 602 71.5 # Arg ACG 0 0 Predicted protein(s) Prediction of potential genes in microbial genomes Time: Tue Jul 5 20:27:22 2011 Seq name: gi|307679275|gb|GL456452.1| Enterococcus faecalis TX0411 genomic scaffold Scfld159, whole genome shotgun sequence Length of sequence - 55653 bp Number of predicted genes - 59, with homology - 53 Number of transcription units - 25, operones - 15 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 611 - 688 70 ## - Prom 709 - 768 10.0 + Prom 725 - 784 10.2 2 2 Tu 1 . + CDS 901 - 1842 525 ## EF_B0005 Cro/CI family transcriptional regulator - Term 1740 - 1789 -1.0 3 3 Op 1 . - CDS 1868 - 3457 1297 ## COG4166 ABC-type oligopeptide transport system, periplasmic component 4 3 Op 2 . - CDS 3506 - 4663 752 ## COG1916 Uncharacterized homolog of PrgY (pheromone shutdown protein) - Prom 4758 - 4817 6.4 5 4 Tu 1 . - CDS 4833 - 5843 697 ## EF_B0001 replication-associated protein RepA - Prom 5867 - 5926 7.0 - Term 6027 - 6070 8.9 6 5 Op 1 . - CDS 6103 - 6459 406 ## EF_B0065 hypothetical protein 7 5 Op 2 . - CDS 6452 - 7234 560 ## COG1192 ATPases involved in chromosome partitioning - Prom 7259 - 7318 7.4 - Term 7269 - 7322 10.0 8 6 Tu 1 . - CDS 7488 - 7784 254 ## EF_B0063 replication control protein PrgN - Prom 7824 - 7883 4.8 - Term 7939 - 7976 7.4 9 7 Tu 1 . - CDS 8034 - 8117 73 ## - Prom 8165 - 8224 7.2 10 8 Op 1 . - CDS 8229 - 8333 131 ## 11 8 Op 2 . - CDS 8372 - 8878 552 ## EF_B0061 hypothetical protein 12 8 Op 3 . - CDS 8883 - 10199 917 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair - Prom 10219 - 10278 6.7 - Term 10252 - 10308 -0.7 13 9 Tu 1 . - CDS 10334 - 10420 61 ## - Prom 10661 - 10720 6.5 14 10 Op 1 . - CDS 10726 - 12618 688 ## COG1479 Uncharacterized conserved protein 15 10 Op 2 . - CDS 12673 - 13278 499 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs - Prom 13410 - 13469 11.1 - Term 13357 - 13408 12.1 16 11 Op 1 . - CDS 13533 - 14516 161 ## SGGBAA2069_c06290 hypothetical protein 17 11 Op 2 1/0.000 - CDS 14517 - 15755 885 ## COG1404 Subtilisin-like serine proteases 18 11 Op 3 1/0.000 - CDS 15752 - 17896 583 ## COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain 19 11 Op 4 . - CDS 17908 - 20889 1494 ## COG4403 Lantibiotic modifying enzyme - Term 20903 - 20937 6.9 20 12 Op 1 . - CDS 20950 - 21141 238 ## EF0526 CylL-S protein 21 12 Op 2 . - CDS 21175 - 21381 362 ## EF0525 CylL-L protein - Prom 21437 - 21496 11.3 + Prom 21386 - 21445 5.4 22 13 Op 1 . + CDS 21500 - 21784 116 ## gi|256959430|ref|ZP_05563601.1| CylR1 23 13 Op 2 . + CDS 21785 - 21985 215 ## COG1476 Predicted transcriptional regulators + Term 22070 - 22138 7.2 - Term 22222 - 22262 2.1 24 14 Op 1 . - CDS 22431 - 23723 467 ## LACR_0292 hypothetical protein 25 14 Op 2 . - CDS 23734 - 23865 170 ## gi|257080296|ref|ZP_05574657.1| predicted protein 26 14 Op 3 . - CDS 23868 - 24731 529 ## MPTP_1991 DNA-entry nuclease 27 14 Op 4 . - CDS 24721 - 25161 469 ## gi|307292304|ref|ZP_07572165.1| hypothetical protein HMPREF9509_02601 28 14 Op 5 . - CDS 25158 - 25301 288 ## 29 14 Op 6 . - CDS 25375 - 26310 682 ## gi|256959425|ref|ZP_05563596.1| predicted protein - Prom 26390 - 26449 4.3 30 14 Op 7 . - CDS 26451 - 26648 271 ## gi|257080300|ref|ZP_05574661.1| predicted protein - Prom 26712 - 26771 80.4 + Prom 26995 - 27054 3.1 31 15 Tu 1 . + CDS 27127 - 27234 87 ## + Term 27313 - 27349 5.7 - Term 27361 - 27390 2.1 32 16 Tu 1 . - CDS 27453 - 27929 577 ## COG0629 Single-stranded DNA-binding protein - Prom 27955 - 28014 8.5 33 17 Op 1 . - CDS 28068 - 29402 698 ## EF_B0033 hypothetical protein 34 17 Op 2 . - CDS 29399 - 30175 620 ## EFA0021 hypothetical protein - Prom 30223 - 30282 5.6 35 18 Op 1 . - CDS 30337 - 30603 333 ## EFA0022 hypothetical protein 36 18 Op 2 . - CDS 30610 - 30984 172 ## EF_B0037 hypothetical protein - Prom 31062 - 31121 2.5 37 19 Op 1 . - CDS 31210 - 31698 302 ## EFA0024 hypothetical protein 38 19 Op 2 . - CDS 31704 - 32297 461 ## EF0505 hypothetical protein - Prom 32462 - 32521 5.8 - Term 32810 - 32875 7.5 39 20 Op 1 . - CDS 33012 - 35270 1815 ## EF0503 hypothetical protein 40 20 Op 2 . - CDS 35257 - 37608 1983 ## EF0502 hypothetical protein 41 20 Op 3 . - CDS 37626 - 37964 397 ## EF0501 putative lipoprotein 42 20 Op 4 . - CDS 37981 - 40473 2228 ## EF0500 hypothetical protein - Prom 40498 - 40557 3.9 - Term 40516 - 40550 4.5 43 21 Op 1 . - CDS 40578 - 41036 474 ## COG0629 Single-stranded DNA-binding protein - Prom 41070 - 41129 3.2 44 21 Op 2 . - CDS 41131 - 41607 300 ## EF0498 hypothetical protein 45 21 Op 3 . - CDS 41645 - 42034 217 ## EF0497 hypothetical protein 46 21 Op 4 . - CDS 42034 - 42294 291 ## EFA0036 hypothetical protein 47 21 Op 5 . - CDS 42299 - 43144 801 ## EFA0037 hypothetical protein - Prom 43229 - 43288 1.5 48 22 Op 1 . - CDS 43326 - 43640 360 ## EF0494 hypothetical protein 49 22 Op 2 . - CDS 43640 - 43948 181 ## EF0493 hypothetical protein - Prom 43968 - 44027 3.8 - Term 43993 - 44035 0.4 50 23 Op 1 . - CDS 44040 - 44657 615 ## EFA0040 hypothetical protein 51 23 Op 2 . - CDS 44660 - 45931 961 ## COG3942 Surface antigen 52 23 Op 3 . - CDS 45941 - 46813 986 ## EFA0042 cell wall surface anchor signal protein 53 23 Op 4 . - CDS 46836 - 47714 715 ## EF0489 hypothetical protein 54 23 Op 5 . - CDS 47725 - 47985 250 ## EF0488 hypothetical protein 55 23 Op 6 . - CDS 48054 - 48368 217 ## EF0487 hypothetical protein 56 23 Op 7 . - CDS 48462 - 48782 435 ## EF0486 hypothetical protein - Prom 48808 - 48867 2.1 - Term 48825 - 48868 4.4 57 23 Op 8 . - CDS 48877 - 52767 4471 ## EFA0047 aggregation substance Asa1 - Prom 52985 - 53044 5.2 - Term 53037 - 53072 4.1 58 24 Tu 1 . - CDS 53074 - 53409 467 ## EFA0048 hypothetical protein - Term 53954 - 53997 7.2 59 25 Tu 1 . - CDS 54006 - 55652 1935 ## EFA0052 surface exclusion protein Sea1 Predicted protein(s) >gi|307679275|gb|GL456452.1| GENE 1 611 - 688 70 25 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIKKSILKIKYYVPVLISLTLILSA >gi|307679275|gb|GL456452.1| GENE 2 901 - 1842 525 313 aa, chain + ## HITS:1 COG:no KEGG:EF_B0005 NR:ns ## KEGG: EF_B0005 # Name: not_defined # Def: Cro/CI family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 313 1 313 313 563 99.0 1e-159 MDYKELLEILRKDLNFKKVDLYQEKSNKTRYREIELGEKSPTIEELISFTDTLGIRLSEF LYRGDITPLAASYYGKRKIEVSSLINNFPELEKQFPEIYKDRFKNLQCYTLFTLCLIISK SLNNSLYTFKNKDIRELKNFYKNREVILGADYAILSHLYMAVPEYSNELDFLTEKLFPIN QSYGDIHDHAVQLCIKNAVTVFLEKKDFEKADYFLEQFDIVRKVPSFILDGTINLEMIYL KHLRNFLKKRNMEEYLKAVNIVNLFSQLGENDTYKELVKEVTEIARKENFEVPSSLNIIA DTFEGVGYLKSDK >gi|307679275|gb|GL456452.1| GENE 3 1868 - 3457 1297 529 aa, chain - ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 7 524 21 544 549 353 38.0 4e-97 MLLVFASCGVNKSTEDSKKTNETKVEQIATLSAGTPVQSLDPATAVDQTSVTLLANVMEG LYRLDEKNQPQPAIAAGQPKISNGGKTYTIVIRDGAKWADGTDITADDFVTAWQRVLDPK TASPNVELFAAIKNAKEISIGKQQKETLGVKSKGNKTIEIELEEPTPYFTDLLALTAYFP VQQNAVKEYGKEYGTTKENIVTNGAFTLTDLNGVGISDKWTIAKNPKYWDKKHVAMEKIK FQVVKDINTGINLYNDGQLDDAPVAGEYSKQLENNKDFIRELSATTMFLEVNQRNKKSIT SNKHARQAINFAIDREAISNKILTNGSIPAKGVVPSKLVYNPKTGKDFTNSSLVFLDKSK AKDSWEKAKKELKGTDLSIDIMVNEEDLSKKLGEYLQNELQDTLDGLKVSVTAVPATLQT ERLNSGNFMIALSGWQADFADPVSFLANFESKSSLNHGGYANEEYDKLLKNNSSKRLQEL KDAEKLILEDAGVIPLLQIGNAKLRNQKISEMKVHSIGAKYDYKTMEIK >gi|307679275|gb|GL456452.1| GENE 4 3506 - 4663 752 385 aa, chain - ## HITS:1 COG:XF2444 KEGG:ns NR:ns ## COG: XF2444 COG1916 # Protein_GI_number: 15839035 # Func_class: S Function unknown # Function: Uncharacterized homolog of PrgY (pheromone shutdown protein) # Organism: Xylella fastidiosa 9a5c # 12 384 24 403 405 196 32.0 9e-50 MEEDIVRLFYKGSEIILIGTSHISAESADLVRKTIQEENPDIICIEWDQKRYKKNIHPDE WDDTDIVKIIKNKQFPVFIFGVIYKLFQKKVSQDMNSLVGKEFVVAVDESKKLNIKFYLI DRDSSLTFKRAWRMLNFREKVKLPYAFGKIFEGAEETEEEVQNLLESENFEPVFEELKES YPNLWEVFVTERDDYLATKIQNTANGKTVAVLGKAHLKGVSDRLKNNQKSDLQKLEIIPP KKFGSKLLEWIIPGILLILLGVSFYQGTQVGIEQLLRWLLWNGGLAALFTVFALGHPLTV LTSLIFAPLATLLPMDSVGVFSAIVEATVRKPKVKDFQTMDLDLQSIKTIYKNRVLRVFL VFFLSSLGGLLGNIIGGLGIVKNLF >gi|307679275|gb|GL456452.1| GENE 5 4833 - 5843 697 336 aa, chain - ## HITS:1 COG:no KEGG:EF_B0001 NR:ns ## KEGG: EF_B0001 # Name: repA-2 # Def: replication-associated protein RepA # Organism: E.faecalis # Pathway: not_defined # 1 336 1 336 336 590 99.0 1e-167 MNDFQFISANETYRNLYYQLPKVLFTSEFYKTMSNDSKIAYAMLQDRCEYSIQNNWIDQD GHIYFIFTRNELMDILGCKENKIAKIKKELKDKNLLYEKRIPPKKLSTGEFKNYPNRLYL GKLEVSATDVYAISNASYTNEFPESGKNQPSDKHDKIGVSFESGKNQRPEESNNTSTLFE SGKNQPNLYLTNSLDTIDTIDTEKERLQQQLLLDQFSEVQENTFLNKDSLKFIAAFSDTI QEAHEMVGTIIRAKTKVEKEYNLVLIGEDYQEEIDKCLRRVMHKIKTDSTVKSPKGLFYK SFYNLFVECALEKENINKGNNSKGSEITLHNWVENK >gi|307679275|gb|GL456452.1| GENE 6 6103 - 6459 406 118 aa, chain - ## HITS:1 COG:no KEGG:EF_B0065 NR:ns ## KEGG: EF_B0065 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 118 1 118 118 178 100.0 8e-44 MSNNRGKSAAERLLGAGKEDTNPTKATTSNEKELKTTHEHIVMNKKNIEKLIKQQGNSKR NADSIRINPILANALKYWTSIGEPEKSKPDVIEETLLKSIPEEYLIKGYEMAKKQNKI >gi|307679275|gb|GL456452.1| GENE 7 6452 - 7234 560 260 aa, chain - ## HITS:1 COG:BS_soj KEGG:ns NR:ns ## COG: BS_soj COG1192 # Protein_GI_number: 16081149 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Bacillus subtilis # 1 250 1 248 253 188 41.0 1e-47 MARIISVANQKGGVSKTTTSINLGAALHFTFNKSVLVIDMDPQGNATDNFGFDIDGTNVP TIYEVLKDEASITEAILNYKGIDVIPADIALSSAEREFTQVGSEHRLKRVLQPIEENYDY IIIDCPPSLGILTVNAFTVSDEIIIPVEAAYFSLKGLVKLNETIETVKEYTNESLIIRGV LFTKYNERFNISKEMNKTANQISDALHVNIFDTYIRRTITVDEAQAAGSDLISFNKTSTA EDDYIQFTKEFLEKVGDLNE >gi|307679275|gb|GL456452.1| GENE 8 7488 - 7784 254 98 aa, chain - ## HITS:1 COG:no KEGG:EF_B0063 NR:ns ## KEGG: EF_B0063 # Name: prgN # Def: replication control protein PrgN # Organism: E.faecalis # Pathway: not_defined # 1 98 1 98 98 187 100.0 1e-46 MPRKTFVYPHPINAYIIKQLGITVEEFCELHAFSQGTVSSWITRNKKIETLPISFIYSLS LSASKTMDQVYSDLLKLQDDYLLHLERHRRTKKIIDEE >gi|307679275|gb|GL456452.1| GENE 9 8034 - 8117 73 27 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYELMSLVIAPLFVGLVILLVDHWLDD >gi|307679275|gb|GL456452.1| GENE 10 8229 - 8333 131 34 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MALHTYSVRVGVLRAECQVIQVSTNVRYVNEYTY >gi|307679275|gb|GL456452.1| GENE 11 8372 - 8878 552 168 aa, chain - ## HITS:1 COG:no KEGG:EF_B0061 NR:ns ## KEGG: EF_B0061 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 168 1 168 168 315 100.0 3e-85 MKKTKKEFTPYNDYIDRPFQLKWPTAFPLGELTEAIKETNDYHSREVERLPQQSQAQIEH LLSSSIKQNKVLEIQLNSLDEYGRVKPHVFGVFRGMAEFDVVLIGDFQIDFYDIRYIKIH NFLKWSAVDTLENPFADVVLPELSDEEQESIDAFMKDYYDDGEFYEEI >gi|307679275|gb|GL456452.1| GENE 12 8883 - 10199 917 438 aa, chain - ## HITS:1 COG:pli0067 KEGG:ns NR:ns ## COG: pli0067 COG0389 # Protein_GI_number: 18450349 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Listeria innocua # 4 431 6 426 426 402 49.0 1e-112 MKFDYSKEPRRDVLCIDVKSFYASVECVERGLDPLKTMLIVMSGADNAGGLVLAASPMAK KVLGISNVTRKDEVPDHPELLIVPPRMNLYMKRNSEINNLLKRFVADEDHSVFSVDESFI DITASLKYFNCDTAYRLAKIIQRVIYNHMGLYVTIGIGDNPLLAKLALDNEAKNTPGFVA EWRYENVEEKVWTISPITEFCGIGKRMAARLKMSGIESIYDLAHADPYILKQRFGVMGLQ LYAHSWGIDRSFLGEKRQVAKEKSFGNSQVLPRDYARRDQIELVLKELSDQVATRLRNSN CQTECVSIFVGYSKGQVDGLGRSGWRKQLKIARSNNTKVLTEHVLKLFRENYVPGMDIRN LGVSFGKLVWDTTLQLDLFSPPEEQIINTQLDFLIDKIRRKFGFKALIHASSLLDGATAV NRAGLVGGHAGGNTGLGG >gi|307679275|gb|GL456452.1| GENE 13 10334 - 10420 61 28 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVKIRIQSSIHGELSKNNSINYNYLLER >gi|307679275|gb|GL456452.1| GENE 14 10726 - 12618 688 630 aa, chain - ## HITS:1 COG:all4179 KEGG:ns NR:ns ## COG: all4179 COG1479 # Protein_GI_number: 17231671 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Nostoc sp. PCC 7120 # 6 251 5 232 593 62 24.0 4e-09 MKKKFEAKQCSVEELLKKNKQLYKVSNFQRTYAWKYKQQEDLMNDLFNHLKITDEGLYEN SDFFMGSFIFYKGSREKYIVDGQQRLITLSIVFSIMRRKCIEIKNNSRIKFKKIETHEIA GDIINDLYGYIYTKIGSEIAPTVWPHSKNEQGYLFGEILNTDSNQKINTPECTSCNSYYE AYNSIEEIIDSKLERKRNNFEKVKLLKALFDQIKFAETVVLNLDDENTAYEIYSNINSKG VTLTDIDLIKNDYIYKTKDYYSVPGQRNIASELWDKINLNITLSSTITFHDFFKYCWYML HEEDVDEYYDSESNLFEMFQNKYRDGSSARKLDKLFHDLELLSKLLHNLETTDNLPKNDN WPITIKKITFLNKISNDSISNLYKLWVLPLYYKAISADKPNNMKYFSVFKKCIPFISDTL FTYKLLLRYQETQYEVLRDLESLYSSIFRNLLKFKANESPAIIVEELKRERSGILNNSQE IIQKAIQELSYSKKTNSPMDTDLVRYLIERLNENNFNTQSVVGGIEHIIEDEKGTKCSSN IGNLVFLEGNYNDMANKIKQDLLKKHNDDENKVERLLLEKKFTEIYTRSEYPQVKELCRT YPDGDFTEVEVKERAKYMAKYFIDEYLEIN >gi|307679275|gb|GL456452.1| GENE 15 12673 - 13278 499 201 aa, chain - ## HITS:1 COG:pli0059 KEGG:ns NR:ns ## COG: pli0059 COG1961 # Protein_GI_number: 18450341 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Listeria innocua # 3 187 2 196 199 102 35.0 6e-22 MAKIGYARVSSVDQNLDRQLELLSQCDKIFTDKASGKDTNRDGFQEMMKFIREDDIIVVT ELKRLGRNNKELTETMNLIQLKKATLEVLNLPALTGITDDNLRRLLNNLIIELYKYQAEE ERRYIRETQQQGITLAKAKGKYKGGKPKYRENDPRLQLAFKLFLDGCTDKEVEQQTGINR RTFRRYRMKYGITNSLRHKND >gi|307679275|gb|GL456452.1| GENE 16 13533 - 14516 161 327 aa, chain - ## HITS:1 COG:no KEGG:SGGBAA2069_c06290 NR:ns ## KEGG: SGGBAA2069_c06290 # Name: not_defined # Def: hypothetical protein # Organism: S.gallolyticus_gallolyticus # Pathway: not_defined # 2 325 3 325 326 190 36.0 1e-46 MKFISPMIFTLLLVIFTLVFELNLVSTAYFALLLSIFVHELGHLAFGLFNKVRPESLIFG FIKFSWENQFKIRLNTQWGFFGGLFRYKPTTFNNKKILRLLTGGPIFSLFFTLTFFVKID FFQYFSLFNFSIFLITAVPFNFNGFMNDGYNIYKLVTKDYIFEMYYIVSNSLLNKYNQST FLNTTEVCKIIKKNKELPLYVLNTFLLYVIYEYLIDKNNRKLKLIYPILSKEDKILNNKS YLQNFYLANLYMIEYILSVDNKQTFKKINLKILDSISRSRIRYLNFKCSKSDDDEISQSM TEFSNIIKNYSDQMSTMIIAEKQWVQN >gi|307679275|gb|GL456452.1| GENE 17 14517 - 15755 885 412 aa, chain - ## HITS:1 COG:slr0535 KEGG:ns NR:ns ## COG: slr0535 COG1404 # Protein_GI_number: 16332024 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Synechocystis # 133 381 139 369 613 95 29.0 2e-19 MKKRGLTYILISYIFLILGTTGYASDLSNNISFFIDNSQTTAIEEIESELSSEKVDYIQE IGLVSFKNLDDSDRKFIGKYFNVSEGKKLPDFKPEEVNSSILNINILNKDFKSFNWPYKK ILSHIDPVKEQLGKDITIALIDSGIDRLHPNLQDNNLRLKNYVNDIELDEYGHGTQVAGV IDTIAPRVNLNSYKVMDGTDGNSINMLKAIVDATNDQVDIINVSLGSYKNMEIDDERFTV EAFRKVVNYARKNNILIVASAGNESRDISTGNEKHIPGGLESVITVGATKKSGDIADYSN YGSNVSIYGPAGGYGDNYKITGQIDAREMMMTYYPTSLVSPLGKAADFPDGYTLSFGTSL ATPEVSAALAAIMSKNVDNSKDSNEVLNTLFENADSFIDKNSMLKYKEVRIK >gi|307679275|gb|GL456452.1| GENE 18 15752 - 17896 583 714 aa, chain - ## HITS:1 COG:SP1953 KEGG:ns NR:ns ## COG: SP1953 COG2274 # Protein_GI_number: 15901777 # Func_class: V Defense mechanisms # Function: ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain # Organism: Streptococcus pneumoniae TIGR4 # 7 704 2 695 698 349 33.0 1e-95 MKRLKYVAQGEHSECALACITMLLNYYGNQSTLVELREKYGVPKGGLTIKNIRTVFDEYG FDVSTFKSSFSNYLDLPTPVISYWNNQHFVVIEKIKKKKVLILDPASNKRWIDISEFKKN FSNILIYAHKKKTKKEGKRKQFFLKSFIFTKFKRYFFSLIILSFVSQLLLLLIPIATKYS IDNIRSFQEIPTYVLLLILTSFFSVLYVVQYLKSSVVAEFQYEFDFKLMFSYIDKLFSMP LMYFSNRSTGELVFRANLNIYIRQILSQKVITTLIDSLFLGIYLFLMVNYSILLTIIALV LISLIAFLSIINSHTIKRFVDKEIMEQGNVQRIITEAIEGIETIKSANAEKSFLLNWKNM FTSQLLITKNKNRYIAIFGILPEIIQSVMPALFLIIGIKLIINNSLSLGSLIGFVSIVTM VMKPILSLVSSYNDFLLLNVYFQKLSEVLTYEEKNDFNNKKGNVGKEEFIYRVNNVYYTI SVFEKNILNGISFDIRKGDKVAIVGRSGSGKSTLLKLLAGLLQPSNGEILYEGYPLSNNS NNRRNIFYVNQNAHIFNETIEKNISLEFKPNSSINEKKRLKESMSKSKMDEVLLGIPQYE KTIVSENGSNFSGGQRQKIALARAFYSNVNTLLLDEPTSAMDNISEFEVFSNLLDEKRTV ITVAHRISTVKNFDKIILMDNGEIVCIGKHEDLIENSELYRSLYYKKQQFGGTK >gi|307679275|gb|GL456452.1| GENE 19 17908 - 20889 1494 993 aa, chain - ## HITS:1 COG:BH0455 KEGG:ns NR:ns ## COG: BH0455 COG4403 # Protein_GI_number: 15613018 # Func_class: V Defense mechanisms # Function: Lantibiotic modifying enzyme # Organism: Bacillus halodurans # 135 992 133 1045 1059 278 26.0 3e-74 MEDNLINVLSINERCFLLKQSGNEKYDIKNLQAWKERKSVLKQDDLDYLIKYKYESLDNF GLGITPIENFPDKEVAIQYIKDQSWYIFFESILDSYNDSEEQLLEVDASYPFRYFLQYAR LFLLDLNSELNICTKEFIINLLENLTQELIHLTSKTLVLDLHTFKKNEPLKGNDSSKRFI YYLKKRFNSKKDIIAFYTCYPELMRITVVRMRYFLDNTKQMLIRVTEDLPSIQNCFNIQS SELNSISESQGDSHSRGKTVSTLTFSDGKKIVYKPKINSENKLRDFFEFLNKELEADIYI VKKVTRNTYFYEEYIDNIEINNIEEVKKYYERYGKLIGIAFLFNVTDLHYENIIAHGEYP VIIDNETFFQQNIPIEFGNSATVDAKYKYLDSIMVTGLVPYLAMKDKSDSKDEGVNLSAL NFKEQSVPFKILKIKNTFTDEMRFEYQTHIMDTAKNTPIMNNEKISFISYEKYIVTGMKS ILMKAKDSKKKILAYINNNLQNLIVRNVIRPTQRYADMLEFSYHPNCFSNAIEREKVLHN MWAYPYKNKKVVHYEFSDLIDGDIPIFYNNISKTSLIASDGCLVEDFYQESALNRCLNKI NDLCDEDISIQTVWLEIALNIYNPYKYINDLKNQNSNKYIYTGLELNSKIIQACQKIEKK IFKRAIFNKKTNTVNWIDIKLDQDWNVGILNNNMYDGLPGIFIFYVALKYITKNHKYDYV IECIKNSIYTIPSEDILSAFFGKGSLIYPLLVDYRLNNDINSLNVAVEIADMLIEKKPIN NGELKNDWIHGHNSIIKVLLLLSEITEDEKYRKFSLEIFEKLSEEPYFNFRGFGHGIYSY VHLLSKFNRIDKANSLLHKIKESYFEEEPKNNSWCKGTVGELLATIELYDDNISNIDINK TIEYKNKDCLCHGNAGTLEGLIQLAKKDPGTYQYKKNKLISYMLNDFEKNNTLKVAGSEY LESLGFFVGISGVGYELLRNLDSEIPNALLFEL >gi|307679275|gb|GL456452.1| GENE 20 20950 - 21141 238 63 aa, chain - ## HITS:1 COG:no KEGG:EF0526 NR:ns ## KEGG: EF0526 # Name: not_defined # Def: CylL-S protein # Organism: E.faecalis # Pathway: not_defined # 1 63 1 63 63 113 100.0 2e-24 MLNKENQENYYSNKLELVGPSFEELSLEEMEAIQGSGDVQAETTPACFTIGLGVGALFSA KFC >gi|307679275|gb|GL456452.1| GENE 21 21175 - 21381 362 68 aa, chain - ## HITS:1 COG:no KEGG:EF0525 NR:ns ## KEGG: EF0525 # Name: not_defined # Def: CylL-L protein # Organism: E.faecalis # Pathway: not_defined # 1 68 1 68 68 87 100.0 1e-16 MENLSVVPSFEELSVEEMEAIQGSGDVQAETTPVCAVAATAAASSAACGWVGGGIFTGVT VVVSLKHC >gi|307679275|gb|GL456452.1| GENE 22 21500 - 21784 116 94 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256959430|ref|ZP_05563601.1| ## NR: gi|256959430|ref|ZP_05563601.1| CylR1 [Enterococcus faecalis DS5] CylR1 [Enterococcus faecalis JH1] hypothetical protein HMPREF9509_02596 [Enterococcus faecalis TX0411] CylR1 [Enterococcus faecalis] unknown [Enterococcus faecalis] CylR1 [Enterococcus faecalis DS5] CylR1 [Enterococcus faecalis JH1] hypothetical protein HMPREF9509_02596 [Enterococcus faecalis TX0411] # 1 94 1 94 94 100 100.0 5e-20 MAIFIFLLDIISVVYFVFNLTDSKKDERILYTISLTSTYMYLFINFSILIVVAIFLFLPN VITKNYLFNFVYYYFSLSMILHSLLLLFFNKRTS >gi|307679275|gb|GL456452.1| GENE 23 21785 - 21985 215 66 aa, chain + ## HITS:1 COG:PAB7155 KEGG:ns NR:ns ## COG: PAB7155 COG1476 # Protein_GI_number: 14520844 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Pyrococcus abyssi # 4 66 3 65 73 63 52.0 1e-10 MIINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDI FQWQPE >gi|307679275|gb|GL456452.1| GENE 24 22431 - 23723 467 430 aa, chain - ## HITS:1 COG:no KEGG:LACR_0292 NR:ns ## KEGG: LACR_0292 # Name: not_defined # Def: hypothetical protein # Organism: L.lactis_SK11 # Pathway: not_defined # 5 402 4 430 434 140 29.0 2e-31 MINKVEKRDILILSSFVFVVMLIYNFGIKQMEFGDDAFFLKQFTHDFQSNYYEFLEFRYN EWTSRLVIEIALTQAVQHVFLWRVLNAIAMSIVAIVPALLFNSDNSRRGLIIGTGMSLLI PASMINNAGWIATTTNYVWVMAAALLSIWPIMNYIRGKSVNWLSLILSLVFLIYATNQEQ MVVIMLVSLLILAGILFLSKKNILITLPHIAIVIASFVFILTCKGNAARNVQETKQWLPN FSSYSIFDKLQIGYSSTLKALFFEWSPLMLAFVLLILTAGLVKNGTLVKKMISGIPLLTY LICTRFNTIIDQTYDIVSGKTYMSLVVLLTGLVFLYVIGIFGASNNPLEFLSVIFLLILG VGSRIMMGFSPTIWVSGSRTYYFTYVLIMMSGVYLISQLPENNQSRTFKVLFGYFLVLAL LLIMMYTKIL >gi|307679275|gb|GL456452.1| GENE 25 23734 - 23865 170 43 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|257080296|ref|ZP_05574657.1| ## NR: gi|257080296|ref|ZP_05574657.1| predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis JH1] # 1 43 1 43 477 89 100.0 9e-17 MTKEEKIILIVRNSDFTYEELEKLPMSSIDSIYKAHVLEKNGG >gi|307679275|gb|GL456452.1| GENE 26 23868 - 24731 529 287 aa, chain - ## HITS:1 COG:no KEGG:MPTP_1991 NR:ns ## KEGG: MPTP_1991 # Name: not_defined # Def: DNA-entry nuclease # Organism: M.plutonius # Pathway: not_defined # 52 285 36 269 280 309 67.0 7e-83 MKVKRKKQPYWLGSLLSLVIIGFGLLNHLDLSEQLSSFLSNDIFQEVAKSDKKSLTKKPR NVKTKKSTSAPYDQQQYNQLANLDFQSGGKAAIEVNNGQSSLDIATWKENKVIYGDLDSL NRTTFVTAYLDRKNLGRSEGRERQVWQPTGWHQKQIDGDPIVNRGHLLAYTSSFNFDIDG NFKIGENGSQDNPKNLATQTAFSNQKVQTHYEKLVRDAQKLKGNKVIYQIVTVFRGKELM PRGYWLQAIDSAGTLNFNVYEYNVQPNVVFNYEEGTSQIDRTMKVRE >gi|307679275|gb|GL456452.1| GENE 27 24721 - 25161 469 146 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|307292304|ref|ZP_07572165.1| ## NR: gi|307292304|ref|ZP_07572165.1| hypothetical protein HMPREF9509_02601 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9509_02601 [Enterococcus faecalis TX0411] # 1 146 1 146 146 261 100.0 1e-68 MREVTAQQLLTEFSIIEKMAQSDAIKQRFCLDNYLAEDVKSAINELNSLYPAYHFEYQEV FGGFGHDLVVTDIAQKVTYDRIPKTRTYGELFQTLAKVYGIHSSAKFHHKPTDRLTEEEF QETIKFYENFDIDTLFSQDEDKYDES >gi|307679275|gb|GL456452.1| GENE 28 25158 - 25301 288 47 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSNKELSKKYQESLKQRREKQTKRERALEGTVIAPLTDKNNRKDKNK >gi|307679275|gb|GL456452.1| GENE 29 25375 - 26310 682 311 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256959425|ref|ZP_05563596.1| ## NR: gi|256959425|ref|ZP_05563596.1| predicted protein [Enterococcus faecalis DS5] hypothetical protein HMPREF9509_02603 [Enterococcus faecalis TX0411] unknown [Enterococcus faecalis] predicted protein [Enterococcus faecalis DS5] hypothetical protein HMPREF9509_02603 [Enterococcus faecalis TX0411] # 1 311 1 311 311 528 100.0 1e-148 MTLTTEVFHDFLCSSQQTFIFQEEKQTKSLVKIMIDPKSTRFFSVFLNPFLQDGESLSFR QNESIGDVIGIYDSVTDTFFSQAEYLIEWHLKGVDITGFKDLHEVIQQLERELAEQTLAE INQHYNYYYTLEGKYLADLSDWKITTLKNEVRKKLLDGQTTFIMDHSFVQYECADSEILD LLTEKQATQSRLVKKYLEKNARMLSEHLQKLQFQQQYAKELAENKQFQKEKEIIQAVQNK GMKTITVTYQISDKELTFKMRNIIDSSRDYFSSYDITNKKERDAYDTLTREAIDLQKIKQ ISYGRKVLYAE >gi|307679275|gb|GL456452.1| GENE 30 26451 - 26648 271 65 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|257080300|ref|ZP_05574661.1| ## NR: gi|257080300|ref|ZP_05574661.1| predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis AR01/DG] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis ARO1/DG] # 1 65 1 65 65 89 100.0 7e-17 MNKEQAFQTLDSLVYAMEKLENESIRSEDNEELEQMLALMNRDWHELYTIYGKAWEEYRK NALEK >gi|307679275|gb|GL456452.1| GENE 31 27127 - 27234 87 35 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSVSESLQLMLAFGGFTLTLITTIVAILNYKDKKK >gi|307679275|gb|GL456452.1| GENE 32 27453 - 27929 577 158 aa, chain - ## HITS:1 COG:SPy1830 KEGG:ns NR:ns ## COG: SPy1830 COG0629 # Protein_GI_number: 15675657 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Streptococcus pyogenes M1 GAS # 7 107 8 108 163 97 49.0 9e-21 MIQLSAVGRLTKGAELRITTNGKSVANVTLACKRKRPDTNGNVPTTFIQCVLWGKPAQVF AKYTQKGALVGVNGELQTRSYDDQQGVTHYVTELVVEDFEFLESKETVQKREEKQHAVPQ GQSTPTVNEQPAMNQAPTQQNVYQQPSMNGLSEYGYNQ >gi|307679275|gb|GL456452.1| GENE 33 28068 - 29402 698 444 aa, chain - ## HITS:1 COG:no KEGG:EF_B0033 NR:ns ## KEGG: EF_B0033 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 444 3 447 447 706 82.0 0 MNKKTPKPLTPPKAFFNWCTAQIPTYEWQNKKETILASSRKNCPTIKKRLTKYSRLSFPT KFYSFGIILVRAKRIEIQTHSYWQTITDGTETLIYEPSNLERFSNDTHVKAHYENGHWHE GLLANYGYMSSAYTNTVFYSNNWQEKLTTISELKYLKLPTISRQELAHVYKYRNEIEFLQ KIGATTLANEILFDDERNIFGTWHKKVDMRVITKNWLKANKKRLKTTNPTFHMLMLEKTL KERKVARIEGIENYLHYSQIKQLPKEVNLTKFQHWFMRKGERFSYYMDYLHMLEELNTPF TDDVLFPENLQLAHDNATNTLNLLERELEEQQYQERKKQLKALETEIDDLLFLAPHSLQE IVEEGQVLHHCVGSQHYLEQHTKGKTTIVFIRRKEEPDKPYFTLEYREKRVIQVQGKYNR GHIPEEVEEAIEQWQIEIEKAMPS >gi|307679275|gb|GL456452.1| GENE 34 29399 - 30175 620 258 aa, chain - ## HITS:1 COG:no KEGG:EFA0021 NR:ns ## KEGG: EFA0021 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 258 1 251 251 448 96.0 1e-124 MDFQNIQTVKELRYALKQYKQTLATTIFDDTQGYISVAFKKEVIEKDGKNVQFLCFYPNY EVALYPVETLLAYLEKLPEQAIVTIKDHDGNYSSLFLTIDGTIDQGNNYQWLVISDKNSY ERFFFTAQESTQEQAFEKMLKELETDHDSTLEVVHNWLCRQTDEALFLGILKEDRTLKGA MTYCIGKAQEQSKDQSSAMVADEVVFSWIKEYFLLEKLPETKAVGKVTTTNKKKPTKKSE TKPERKEVDEQIDLFECV >gi|307679275|gb|GL456452.1| GENE 35 30337 - 30603 333 88 aa, chain - ## HITS:1 COG:no KEGG:EFA0022 NR:ns ## KEGG: EFA0022 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 88 1 88 88 162 100.0 4e-39 MRNRIEELKEQARTELNEWGLIIDGCFEGDFETWIGCYARPKDKPTALDPINEEEAKEQA KYAVNGFPQDFTEWYEWEINNGKLKNLL >gi|307679275|gb|GL456452.1| GENE 36 30610 - 30984 172 124 aa, chain - ## HITS:1 COG:no KEGG:EF_B0037 NR:ns ## KEGG: EF_B0037 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 65 124 1 60 61 78 70.0 1e-13 MSTVLSRHSERHEHTGENEQPNRKRKRGETTPFDEKKFLTVQLHFLKRLTKMVVQKSKPK GAENMNTPHLTFKLEHARKEHQKLSEAIITNDTVTLLLNYSCLKNANDRLYQLEYFLNHK EWKD >gi|307679275|gb|GL456452.1| GENE 37 31210 - 31698 302 162 aa, chain - ## HITS:1 COG:no KEGG:EFA0024 NR:ns ## KEGG: EFA0024 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 162 1 162 162 327 99.0 1e-88 MRRIEKEFNKKLAGYERELKKLGCLDDETGLIPISKRRWHVIWWRPVTPAKTIVRSYRLT LDNENLCILGDVEITIYHDGTYGISKEGVPIFINDLLSLKKLFTIFYGTPFNLNFEKIRC VSFNRYCITIPEIYVEKFEVLINYSMILNSCLHEIQKHVEYD >gi|307679275|gb|GL456452.1| GENE 38 31704 - 32297 461 197 aa, chain - ## HITS:1 COG:no KEGG:EF0505 NR:ns ## KEGG: EF0505 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 197 46 242 242 360 99.0 2e-98 MECSQIGLTKFYYLTKEGHNYIGGYYTLPKVPEYNLQHHLQINDYLIKMLELCNNHPHLK AVVSERRKVYEVKDEKKNQKGVKYFVPDFIFMFLDSIGREVEWQFEIELTLKTKRRYSQG VFPKYIKHLKNYEDARLIYVTPSSIIKEELDMFKEYFIDKEGDEYKEVFDRLHVFSAEEF ESELKRLLEKDKFINWE >gi|307679275|gb|GL456452.1| GENE 39 33012 - 35270 1815 752 aa, chain - ## HITS:1 COG:no KEGG:EF0503 NR:ns ## KEGG: EF0503 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 752 1 752 752 1397 98.0 0 MQGNNLFNNGLLQPKKPPIGQEQQKMTRYHQLRLVFGLVGVLLYPFAILGSIPLLIGLAV DKRDKAANVFDMDYESFLKRNSIVFLSFSAVLFVINVFAFILWIPRGYLSAYLLFPLNLL HTALRFNWETIVALLIGSSGMGAIFLAFSSFVAKRKVISKEDERKKITESKAYKDREKNK FEESQRFTDEQEEAYEEAVETVDIDKYKELSNQLLLGTSEFGLPYIINFSEFNQHVLVPA TTGSGKTTLLQLLVQHAVKFNFPVILIDGKGARDTLESMREIAKFYDKEVHAFTDDGDMR YNPVEHGNDISIRDKLVSLAETESVFYSGAAKALLQVTIQLLDEFKGAKVTLSGDTRTTE TVERSLPFVQRFLLPRNVLHLFADAILPNNPKLFEIEVEKKIQKPKKKSVKEGSEILPDS DLDKEEKEEDSQIKNSKFRNISQLGIAQKETETIVLNPETLDLDSYYLLLKRNLRYLPTD KETGENIKQKLFERLFIRYEHKDSPFYLYATSEALQTNINMLLDSELGKLFDTKNAKNVL DVQEIVNQRKLVYVSFNGLIYKEYIRTLAQMLVGDVNYFASEMYRKNVKREVLVIFDEPA SYLNETFIDMVNKGRGAGVYGIFTPQTMADIAKLGDKLMEQLVGNVNTLFIGKTNEKGEA EYWSETMGTYQDIDVTSVTEQEDGYSDVGKSDWSGDRGTKRNVDRFKISPNKIKELRTGE FIIYRTAENVNLPPQKVYVRNALEWLQKSNSK >gi|307679275|gb|GL456452.1| GENE 40 35257 - 37608 1983 783 aa, chain - ## HITS:1 COG:no KEGG:EF0502 NR:ns ## KEGG: EF0502 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 783 1 781 781 1356 97.0 0 MNKKSLVKAVLLFLVGCFFVFTQTTAVNAAPKPDENKVIVTEPTTNVDTIYDTYKDNAFE LMTKEKEKDKPWSTGISEAVVNASAAVKTFVWAGVKGLGEFNAVMVKTLFSMDIITAIKQ PIMNLTSSIATNMLGIAGTIGIAFVFVILGVKFIGQQRYKRFFGIFLMTILIFTGLSVLK DANTSNSLFDMMFSVDKEVETAFVNINPVLGDVSVPMTEKGKDKNGNEVEQKLSADQRAK SAGNLIASRVFYTNVYEPYLLMNYGTSDVNKIRKKTVKYKDKEYDRINLLLDNDMNSEEN NKLMEEVVNYESKDLKNRSIMYYNNWTNTFYGLFYLVVNLIQTVVYFLLSFLRLIIAVIQ LFLLPLLPLLLFAGLFLTETNVFANYFKTFGMTIFMKGMVGFATIFFASFLSLGFQLSNQ TENVWQKILTILIYLLTPLGLYVFRKFFANLVTGRVSLSDGVGFIGNPFGTEANMRRAAK EQKQENKERRKQAQEERKAAIKKRQEEARKHGKAETGLKQRPLNKEQEKRSALRRELKPR PQHKAPNAIEKAQEGLRQAHEKGRMQEQKSEEQLKRQQHESARQKEYEKDRLKKQESLKK INDQSDESTNLTALRNQNRRTGQRSKKRETGHQTLMKRQGEKVLQPTNKPKDMKKQVVAR SPRRTGQPTTRQNIQPKVAAQTVKRSGGTLGSNPAYRRPEVRKKMDQVKQVTQVDVPQTH STPQRVQPKVNEPITRMNRHNTPIIKKEKRTKQSPVVRRERKKSGTQKITNKPKGVRQPR ARK >gi|307679275|gb|GL456452.1| GENE 41 37626 - 37964 397 112 aa, chain - ## HITS:1 COG:no KEGG:EF0501 NR:ns ## KEGG: EF0501 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 112 3 112 114 149 72.0 3e-35 MKKVLPFIALVGLLLLSGCGTDMKKILTADGGKWEVDEGSSKSTYTFFDDGKFSVYDSKD NAAGKYSYDEKNKKITFDVSGRGTFIMEKVEYKDGKINGEINDRETVFVKEK >gi|307679275|gb|GL456452.1| GENE 42 37981 - 40473 2228 830 aa, chain - ## HITS:1 COG:no KEGG:EF0500 NR:ns ## KEGG: EF0500 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 830 1 830 830 1646 99.0 0 MPLKSKEPRLDFPIEAITNNFLFTTSNDVWVGYKLAHQVFPLNNLDFFKEYIEDGKGVFE QDTFDYHFMNIPEYFDLDEQIEATIDNLVKGSFADLGETYFRQAGDILKDEVQMNKYSTY LFIRFTAPIQVANPMEYIELFKEVGRKAINALTGVHVPVSQLYRAYQGLENKIYKDLSNF KNVERMDPRTIGRLFYYFFHRANTRLPERTLLPEEMTEGIIENNTGYMTIEQLDKTHYLA FLPLISLPTSMFGSAIIQNLQDSLSTTIETHVKVTFRHPDKDKRDVHKRRKRIYEQDKEQ TQVDGILDEDEVILFGEERLHELSKKIRSKERRLCRMTTTFVLSADSKQALEEKIKELEF VLDGTDYKLYRPLVDQLTLFNQCLIGAKSQFKSYEHVVSTGYVADLGMDLEKEIGNRYGM PLGRVITAKKFKSVQQALSLSSKIVWFFPNLTKKAIEGAQYTNGNTLIIGPPGQGKSVLV KYIFLWLTFLGQKILYIDPKNETVLFFKRALDKFGHIPEFKALYQRINFVSLSSEEKYRG MLDPLLFLPREEAIQTARNVLENFGEVTTDSHTASDKKTLILDSVNAVMKGKGKKHLTKV IEVIREKDPKLANLISGHNVGLGKILLGNDYSEPIRFENQINVLGTQGLKIPTQAEIDSG RLNNEQIAGMSIMEVIMKMTTIFSTDKTEDAAIIFDEAKGFEDTAQGRFLIEGSLRQGRA NMTDIYLVTQAFMDYDKEDKKELLSYKFAFRPNQKEAQKKVLEFFGMDTNPANIQLINEL KSGTCLFQDHRGRSQPIAIDVLFDSWLMAVSSTNKEDEATQMALAMEQGS >gi|307679275|gb|GL456452.1| GENE 43 40578 - 41036 474 152 aa, chain - ## HITS:1 COG:L0300 KEGG:ns NR:ns ## COG: L0300 COG0629 # Protein_GI_number: 15673001 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Lactococcus lactis # 1 152 1 150 150 167 59.0 8e-42 MINNVTLVGRLTKDPDLRYTQSGTAVGQFTLAINRNFTNANNEREADFINCVIWRKAAES LANYATKGTLIGLTGRIQTRNYENQQGQRIYVTEVVTESFQLLESREVNEQRKEQATGKA TFDKQSMDKPDPLDPFSPENSIVDISDNDLPF >gi|307679275|gb|GL456452.1| GENE 44 41131 - 41607 300 158 aa, chain - ## HITS:1 COG:no KEGG:EF0498 NR:ns ## KEGG: EF0498 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 158 3 160 160 271 98.0 6e-72 MDKRIEAVTKFLESLGTVEDYTEDVAVKYRNLILKSYELYENKYNDTVDDSLCIEVWSNG TYVVTNEDLSFDCESEEDLQKLKELFVNTSFYITINELNKVGHKATLSVKAKAKNLRELG QLIKEYRSCNCKYLKDKVTEIIGDDGRVYLDRISERMD >gi|307679275|gb|GL456452.1| GENE 45 41645 - 42034 217 129 aa, chain - ## HITS:1 COG:no KEGG:EF0497 NR:ns ## KEGG: EF0497 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 129 2 130 130 213 100.0 3e-54 MEYNYTREFKQPHKIYSIKGVALPFAPNGIRLEQIFVGIGILILLLIFAIISFVAKINFF TTIIANFWLILIVGVGVLVWTLFSLKWDNKSFLDYLIGRGNFLYQKKKRYEHGLLVQFHK EKVQYKVRK >gi|307679275|gb|GL456452.1| GENE 46 42034 - 42294 291 86 aa, chain - ## HITS:1 COG:no KEGG:EFA0036 NR:ns ## KEGG: EFA0036 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 86 6 91 91 122 100.0 4e-27 MFDLSGLANNISSQVIILLVILGLVSLVVAVATQGAARGIATVCLILILIALVLVLKDAE KIGTWLKDLIFKPNAGFIFPIKGWRF >gi|307679275|gb|GL456452.1| GENE 47 42299 - 43144 801 281 aa, chain - ## HITS:1 COG:no KEGG:EFA0037 NR:ns ## KEGG: EFA0037 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 16 281 79 344 344 486 98.0 1e-136 MVFFLLFFLISLFLLMSFGRLNTLTRLAMQKQVNREEIIERVNKGVAASDQLKYDGMKLV DRLFTVSSKLEGKEYWEAQITPYLAAGLRAEDLGLDKTNDDRVARNVRFIRLETVDYKES LYSLYYDVRFTEGKEWRQVQVILPVSYAENELKLLDRPTLMNLAKTSESNKVAYDEQRFI PKGKEVNEEETKKLTEFTNRFFELYVKNDEKLGLITNVKGLEHATLEKVDIASLRETGQG VYDVRGTYQFSYEGKSPLTSNFSLQIEATKDSYFIKKMNGV >gi|307679275|gb|GL456452.1| GENE 48 43326 - 43640 360 104 aa, chain - ## HITS:1 COG:no KEGG:EF0494 NR:ns ## KEGG: EF0494 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 104 1 104 104 181 100.0 1e-44 MHENHVNEKETAVENTERIAKNYAYERPAIQTALFILWRVHNKQYQTGARIFYDELEKAT KTSKTAYKEALAFLEGAGMVVNEVVVESKVPQSLIQRYGILKDE >gi|307679275|gb|GL456452.1| GENE 49 43640 - 43948 181 102 aa, chain - ## HITS:1 COG:no KEGG:EF0493 NR:ns ## KEGG: EF0493 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 102 21 122 122 190 100.0 2e-47 MLNQEKERAAVVLADNETRVLFFYKDTCADCQKVYPTVYEEDQGENNIVFINLNQPKNRH YIKTYTLEKVPTFVTPKRRYVGTDTRKIQQLIAENNDERSED >gi|307679275|gb|GL456452.1| GENE 50 44040 - 44657 615 205 aa, chain - ## HITS:1 COG:no KEGG:EFA0040 NR:ns ## KEGG: EFA0040 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 205 1 205 205 286 98.0 4e-76 MRERLKQAQLLVIVLLLVLLTTLGGGYFNEKKENAQIKNQKEKEQQVLKKTLEEKNGQLN DLSRKIEQLLDEKEDPVNEPLTKAVNGLFSLVFDYDSSNKEHTVAKRKEKATVYATEQGL SGIFPRDSDKVVPSVVTVSQLDKAPEIYRTTQKDTGKEKTALVRLEYSVRIAGSQAQRGN FIYKVTFNEESKKFTTIENLGEENQ >gi|307679275|gb|GL456452.1| GENE 51 44660 - 45931 961 423 aa, chain - ## HITS:1 COG:SA2437_2 KEGG:ns NR:ns ## COG: SA2437_2 COG3942 # Protein_GI_number: 15928230 # Func_class: R General function prediction only # Function: Surface antigen # Organism: Staphylococcus aureus N315 # 304 421 6 117 117 94 46.0 3e-19 MNKKRIVFGLLSFFLPIFLVFGGLLFFLLLLTSTSDTSKNDCIQPSINNPTDATDTPKSI EQFVKSHKDAYLLSWKAGGFLPSASISQTMVENGFNFTNPSGTSFWQAHNMGGVKTSKKE DFPVTLATFGQDSVDISGTKPGSNVGDGTGGAYTWFKDYNAGIVGKAEFMAHQTLYTGAI NNTDGLSTLSAIYSGGWATDPTYLMKLQATYNSLGKQFQWLDQEAIQKYGNAPFKKSELV PNIPGKSPITNEKSGKNSDCVVTSDTSDQVTGQNTAPSLEVPSAYKGKLTLPPIDSNDYA GNNYPFGQCTWYAYNRMAQIGKPIEWFSGDGGNGAGWANSARAKGYTVVKGKPSVGWAAS MQGGIGGSAPPYGHVAVVEYVNSDGSILVSEANVINQGSGTRSWRVLDRATVEQIDFIQG KGA >gi|307679275|gb|GL456452.1| GENE 52 45941 - 46813 986 290 aa, chain - ## HITS:1 COG:no KEGG:EFA0042 NR:ns ## KEGG: EFA0042 # Name: not_defined # Def: cell wall surface anchor signal protein # Organism: E.faecalis # Pathway: not_defined # 1 284 2 285 286 268 99.0 2e-70 MKKILFASLFSATLLFGGSEISAFAQEIIPDDTTTPPIEVPTEPSTPEKPTDPTPPIEPP VDPVEPPITPTEPTEPTEPTTPTEPEKPVEPTEPTTPTEPTTPTEPSEPEQPTEPSKPVE PEKPVTPSKPAEPEKPVTPTKPTEPEKPVQPAEPSKPIDVVVTPTGELNHAGNGTQQPTV PIETSNLAEITHVPSVTTPITTTDGENIVAVEKGVPLTQTAEGLKPIQSSYKVLPSGNVE VKGKDGKMKVLPYTGEEMNIFLSAVGGILSVVSGFVIFKKRKAKYKLAYR >gi|307679275|gb|GL456452.1| GENE 53 46836 - 47714 715 292 aa, chain - ## HITS:1 COG:no KEGG:EF0489 NR:ns ## KEGG: EF0489 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 292 1 292 292 458 96.0 1e-127 MYISFDLEATQAEKIALPVHQRFSLVQGLLLLEQANQEVLATKQGGTIAYFLYTGKEQEL PILEAELLLPVKQKDMLDVLLEPVTNDPTLDPIEVKNFLQLVNQSLPKKQRAKSNKKSTE KKATIDTKPVKKKVFLSVSLITLIGLILLMSGFLLGKTNSTPYQEKELEVKKELNTLTEQ VNEQNKVETFTRFFLTNYYSGKTDAKTRQAVLKKFVKKETLSDFLSEKSRARSMFPWEVK KKDKQWTIAFIVVLINEKDEQSTKKITFTAEETKEQLVVMERPTEEDFELTN >gi|307679275|gb|GL456452.1| GENE 54 47725 - 47985 250 86 aa, chain - ## HITS:1 COG:no KEGG:EF0488 NR:ns ## KEGG: EF0488 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 86 1 86 86 158 100.0 8e-38 MIILSGLFILGIGIVGGYQLATLPKLIEMKQHKAIQNHFNVKGNEYTYYQEDSENYILSL EDTEYRIKFSKNTPLKVVFTEILEPM >gi|307679275|gb|GL456452.1| GENE 55 48054 - 48368 217 104 aa, chain - ## HITS:1 COG:no KEGG:EF0487 NR:ns ## KEGG: EF0487 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 104 25 128 128 177 99.0 1e-43 MEFVDVWLDKETQKITLKRCFYDTSFKKQTLKELERVYFQLKEIINVQINKRSLNTNDIR NVRELEEKQQEIKRFMLDVLEDAYWKELANMPEDQRHLDDWDFF >gi|307679275|gb|GL456452.1| GENE 56 48462 - 48782 435 106 aa, chain - ## HITS:1 COG:no KEGG:EF0486 NR:ns ## KEGG: EF0486 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 106 13 118 118 188 100.0 6e-47 MKEIAIQEKDLTLQWRGNTGKLVKVRLKNTRAMEMWYNKQITEENIQEITTLNIIKNGKS LALEVYPEKSIYVKPNLGRINVPVFFIKTPINRGVFEEIFGETLKA >gi|307679275|gb|GL456452.1| GENE 57 48877 - 52767 4471 1296 aa, chain - ## HITS:1 COG:no KEGG:EFA0047 NR:ns ## KEGG: EFA0047 # Name: asa1 # Def: aggregation substance Asa1 # Organism: E.faecalis # Pathway: not_defined # 1 1296 1 1296 1296 2315 99.0 0 MKQQTEVKKRFKMYKAKKHWVVAPILFIGVLGVVGLATDDVQAAELDTQPGTTTVQPDNP DPQVGSTTPKTAVTEEATVQKDTTSQPTKVEEVASEKNGAEQSSATPNDTTNAQQPTVGA EKSAQEQPVVSPETTNEPLGQPTEVAPAENEANKSTSIPKEFETPDVDKAVDEAKKDPNI TVVEKPAEDLGNVSSKDLAAKEKEVEQLQKEQAKKIAQQAAELKAKNEKIAKENAEIAAK NKAEKERYEKEVAEYNKHKNENGYVAKPVNKTLIFDREATKNSKVVSVKAAEYIDAKKLT DKHKDKKLLISMLSVDSSGLTTKDSKKAHFYYNNGAGGTLVVLHKNQPVTITYGNLNASY LGKKIASAEFQYTVKATPDSKGRLNAFLHDDPVATIVYGINIDPRTKKAGAEIEMLVRFF GEDGKEILPTKENPFVFSGASLNSRGENITYEFVKVGNTDTVHEINGSKVARHGNKVYSK TDIDVGTNGISISDWEAVQGKEYIGATVISTPNRIKFTFGNEIVNNPGYDGNSMWFAFNT DLKAKSITPYQEKGRPKQPEKATIEFNRYKANVVPVLVPNKEVTDGQKNINDLNVKRGDS LQYIVTGDTTELAKVDPKTVTKQGIRDTFDAEKVTIDLSKVKVYQADASLNEKDLKAVAA AINSGKAKDVTASYDLHLDQNTVTAMMKTNADDSVVLAMGYKYLLVLPFVVKNVEGDFEN TAVQLTNDGETVTNTVINHVPVSNPSKDVKADKNGTVGSVSLHDKDIPLQTKIYYEVKSS ERPANYGGITEEWGMNDVLDTTHDRFTGKWHAITNYDLKVGDKTLKAGTDISAYILLENK DNKDLTFTMNQALLAALNEGSNKVGKQAWSVYLEVERIKTGDVENTQTENYNKELVRSNT VVTHTPDDPKPTKAVHNKKGEDINHGKVARGDVLSYEMTWDLKGYDKDFAFDTVDLATGV SFFDDYDETKVTPIKDLLRVKDSKGEDITNQFTISWDDAKGTVTISAKDPQAFILAHGGQ ELRVTLPTKVKANVSGDVYNLAEQNTFGQRIKTNTVVNHIPKVNPKKDVVIKVGDKQSQN GATIKLGEKFFYEFTSSDIPAEYAGIVEEWSISDKLDVKHDKFSGQWSVFANSTFVLADG TKVNKGDDISKLFTMTFEQGVVKITASQAFLDAMNLKENKHVAHSWKAFIGVERIAAGDV YNTIEESFNNEKIKTNTVVTHTPEKPQTPPEKTVIVPPTPKTPQAPVEPLVVEKASVVPE LPQTGEKQNVLLTVAGSLAAMLGLAGLGFKRRKETK >gi|307679275|gb|GL456452.1| GENE 58 53074 - 53409 467 111 aa, chain - ## HITS:1 COG:no KEGG:EFA0048 NR:ns ## KEGG: EFA0048 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 111 1 111 111 201 100.0 6e-51 MKNYDPNIRWGLHTIKVSFQRGVYKGFVTFVKSGNCKGLDVLGIDEEDLYDMKFKENPIN FRLLGEDDNGDEWFAMTLKNDKKDELLVEDVWEELSEYIVRIEIIDFEEEK >gi|307679275|gb|GL456452.1| GENE 59 54006 - 55652 1935 548 aa, chain - ## HITS:1 COG:no KEGG:EFA0052 NR:ns ## KEGG: EFA0052 # Name: sea1 # Def: surface exclusion protein Sea1 # Organism: E.faecalis # Pathway: not_defined # 1 548 343 890 890 656 97.0 0 ENQADAAKATEMINVKNPTEKQKQQMSDYVVGLINDVREKLGLQKLKISNQAMKFAWDVA KYDNPKEFDHDVNAINRAAKENGFKEFPGQNFYENLSMGRFTTQEGKVSMYDFEKAARNA LVSMLMNDGHSGYSHLDSLLDANETNMAVSISGDLNDISAKIHIISYNQSKLVETNTYEE GTAPVFKSKETLQKEVATNQEKLATAQQVESDAQQARSASQQALNTAKTTQATAEKELSV HKATLANLQAVATKSTTNYEEKVRQTATAEKSLQQTKDQLATINELIQNRAAVLEKAKTN VAEAQAIEQTSAKVLKEKQEAQKAEEKTLNSLKEVLNLAEENLNQKQVALKTSTRSLARL ENAQPTYEKAVNELNKAEAAVVQAKEAYENSLKSLEELKEQQAVATLSYTQAQEDLSNAK LELQQYQGVLRDLEAQQAEQRRQEALQEQVAKEQQRLEREAKQQQMLVASATSADKTPGL QQLSFSKQKEQPKAQALTHSEPRKTKQVAKAQESLPHTGEQKSIWLTIFGLFMAVGAISF KNKRRKNS Prediction of potential genes in microbial genomes Time: Tue Jul 5 20:31:17 2011 Seq name: gi|307679274|gb|GL456453.1| Enterococcus faecalis TX0411 genomic scaffold Scfld161, whole genome shotgun sequence Length of sequence - 13638 bp Number of predicted genes - 20, with homology - 19 Number of transcription units - 12, operones - 5 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 165 - 362 62 ## - Prom 400 - 459 4.4 + Prom 54 - 113 4.2 2 2 Tu 1 . + CDS 263 - 1462 517 ## CAR_c05940 putative sugar permease + Term 1504 - 1535 3.4 3 3 Tu 1 . - CDS 1538 - 2098 352 ## COG1309 Transcriptional regulator - Prom 2184 - 2243 6.8 + Prom 1993 - 2052 6.5 4 4 Tu 1 . + CDS 2242 - 2856 650 ## Clocel_1495 GCN5-related N-acetyltransferase + Term 3024 - 3076 1.1 + Prom 2995 - 3054 14.6 5 5 Op 1 . + CDS 3097 - 3480 130 ## COG2188 Transcriptional regulators 6 5 Op 2 . + CDS 3401 - 3619 88 ## gi|257886000|ref|ZP_05665653.1| conserved hypothetical protein + Term 3725 - 3774 -0.9 + Prom 4087 - 4146 3.8 7 6 Op 1 . + CDS 4168 - 4929 685 ## COG3633 Na+/serine symporter 8 6 Op 2 . + CDS 5027 - 5428 366 ## COG3633 Na+/serine symporter + Term 5488 - 5546 12.8 + Prom 5791 - 5850 8.2 9 7 Op 1 . + CDS 5965 - 6429 550 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 10 7 Op 2 . + CDS 6422 - 6718 443 ## GALLO_2119 PTS system, ascorbate family, IIA component 11 7 Op 3 . + CDS 6738 - 6986 160 ## COG3037 Uncharacterized protein conserved in bacteria 12 7 Op 4 . + CDS 7040 - 7363 235 ## COG3037 Uncharacterized protein conserved in bacteria 13 8 Tu 1 . - CDS 7303 - 8106 434 ## COG0534 Na+-driven multidrug efflux pump - Prom 8127 - 8186 7.7 14 9 Tu 1 . + CDS 8491 - 9159 561 ## COG0588 Phosphoglycerate mutase 1 + Prom 9183 - 9242 7.3 15 10 Op 1 9/0.000 + CDS 9262 - 9528 389 ## COG3830 ACT domain-containing protein 16 10 Op 2 . + CDS 9543 - 10886 1056 ## COG2848 Uncharacterized conserved protein 17 10 Op 3 . + CDS 10905 - 11417 251 ## COG0546 Predicted phosphatases + Term 11510 - 11566 13.0 - Term 11575 - 11627 15.1 18 11 Tu 1 . - CDS 11788 - 12237 508 ## CMM_2895 hypothetical protein - Prom 12266 - 12325 6.0 + Prom 12641 - 12700 3.0 19 12 Op 1 . + CDS 12728 - 13396 767 ## COG4166 ABC-type oligopeptide transport system, periplasmic component 20 12 Op 2 . + CDS 13397 - 13636 113 ## EF3081 pheromone binding protein Predicted protein(s) >gi|307679274|gb|GL456453.1| GENE 1 165 - 362 62 65 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSQTHRQNKTSSNREIANLYNKNESFFRLFDRAYISHLIGFSLAIYYSILVGVLLFLKVV KNYGN >gi|307679274|gb|GL456453.1| GENE 2 263 - 1462 517 399 aa, chain + ## HITS:1 COG:no KEGG:CAR_c05940 NR:ns ## KEGG: CAR_c05940 # Name: ywbF # Def: putative sugar permease # Organism: Carnobacterium_17-4 # Pathway: not_defined # 5 385 2 391 394 236 39.0 2e-60 MRDQTSGKMIRFYYTSLQFLYWMMFCSVYGFATLFLIYFKIDPAKIGGILALVNIVSTVL QPFISQVIIKKRKIPLITVLKTMIAGLGVILLAGVLIPNLPIITYILGGILVVSMQSFLN ALAFEYSNTGYRINFGFSRAGGSFSYVVTSFLLGQLLAIYSAAILPILVIVEAVIFFVIL HLLPDVKNQEVFPMTKEQDRSVSLRKKYPFLILLFLGFSFLFTFHTMINSFLAQIFENIH GGSKEVGIALMIAALCELPGMIFFEQLVKKKSSKFWLSVASISFAVRGFMMLLASSILMM EMTHLLQAFSFALFIPASAYLFNQFLADDDRVFGQTMIIIATTLGGVIGNVLGGSLLQHF GVWEMLIFGTGFAVLGALLTILGIRKIPKLSEDSGDITK >gi|307679274|gb|GL456453.1| GENE 3 1538 - 2098 352 186 aa, chain - ## HITS:1 COG:BH0719 KEGG:ns NR:ns ## COG: BH0719 COG1309 # Protein_GI_number: 15613282 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 3 170 4 172 188 89 35.0 3e-18 MKKEDRRVKKTEKALAEALSKLLVDKKIQNITIRELTETADLHRSTFYTHYTDIYDLYEK LENSFFQDLDEIISYDTTHSYEDLYAHLIDYVYTNTFVYKLFVINHGDIQFQKRLNNLIE ENYLKIWLQEDKKTVITEEMRYFTIYHIQGCLSVLNHWVESNFAYSKKKMLTFLRLLNDN IEPIMP >gi|307679274|gb|GL456453.1| GENE 4 2242 - 2856 650 204 aa, chain + ## HITS:1 COG:no KEGG:Clocel_1495 NR:ns ## KEGG: Clocel_1495 # Name: not_defined # Def: GCN5-related N-acetyltransferase # Organism: C.cellulovorans # Pathway: not_defined # 1 201 1 201 210 196 48.0 7e-49 MELAFKQLEKKDYKKAIQFAIKGMHFDWYTKNKLLLNLYGRYFWYLELNRATQIIALYAD DELAGVLLADIKGKSKKHHSFSQKLYVKLFDFLQNAFVKDSKGGYDDTNEELLSDYLKKH SPDGEIVFLAANPDLKIKGIGSKLLKEFERREQGKEVFLFTDSGCTYQFYERRGFERKKE KDIVMKILNKEVDLRCMLYSKIIQ >gi|307679274|gb|GL456453.1| GENE 5 3097 - 3480 130 127 aa, chain + ## HITS:1 COG:BH3917 KEGG:ns NR:ns ## COG: BH3917 COG2188 # Protein_GI_number: 15616479 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 108 24 132 261 81 41.0 3e-16 MPKYKEIALALKERIVEGKYQEGSKLPEQESLAREFKTSCVTIRKAIQLLIDEGLLYTRR GSGTFIRSNIRQDNENVTQVNNVFGTSSQENTNVTSKIIRFDVRFPTDYERRLSATYFRS PSCKSWV >gi|307679274|gb|GL456453.1| GENE 6 3401 - 3619 88 72 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|257886000|ref|ZP_05665653.1| ## NR: gi|257886000|ref|ZP_05665653.1| conserved hypothetical protein [Enterococcus faecium 1,231,501] conserved hypothetical protein [Enterococcus faecium 1,231,501] # 8 72 366 430 430 140 100.0 4e-32 MSGFRQIMKGGFLQPTSDPLPANHGYKKIGILSGLGGEIFTYHFFIPQAASSYLEFVEQM REVEAALQTTFQ >gi|307679274|gb|GL456453.1| GENE 7 4168 - 4929 685 253 aa, chain + ## HITS:1 COG:NMA0298 KEGG:ns NR:ns ## COG: NMA0298 COG3633 # Protein_GI_number: 15793312 # Func_class: E Amino acid transport and metabolism # Function: Na+/serine symporter # Organism: Neisseria meningitidis Z2491 # 7 250 4 251 409 184 44.0 1e-46 MVKLYRGDYLLDKFLDMSLVQRISCGIIVGIIVGIFLPSWTFITILGTVFVSCLKAIAPL LVFFLTAASIAKHKVGNETYVKPILFLYLGGTFLSALVAVVVSSIFTIPITLQEQVSEKA PQNIGSVLSTMLTNVTQNPIQAIIESNYLGVLFWAVLLGLALRSHTETTKEVVDQVSVAL SYVVQLIIAFAPIGILGLVYQSISTTGLSGLAEYLQLVLVLVGTMLFVALVVYPLLTFLF IKENPYPLIFFDK >gi|307679274|gb|GL456453.1| GENE 8 5027 - 5428 366 133 aa, chain + ## HITS:1 COG:NMA0298 KEGG:ns NR:ns ## COG: NMA0298 COG3633 # Protein_GI_number: 15793312 # Func_class: E Amino acid transport and metabolism # Function: Na+/serine symporter # Organism: Neisseria meningitidis Z2491 # 13 121 301 409 409 132 66.0 2e-31 MRSRFRWSDHQYGGAAVTITVMTLTTVQTLGIEASFASKLILSLLAAIAACGASGVAGGS LLLIPLACSLFGISNEIAMQVVGIGFIIGVIQDSVETALNSSSDLLFTAIGELSARKRNG EAISLKDSLSESN >gi|307679274|gb|GL456453.1| GENE 9 5965 - 6429 550 154 aa, chain + ## HITS:1 COG:BH0221 KEGG:ns NR:ns ## COG: BH0221 COG1762 # Protein_GI_number: 15612784 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Bacillus halodurans # 4 135 2 133 147 111 39.0 4e-25 MLSKVIKDEYIQLDVQANNFEEAIRKALQPFLEADVVTEKYVETILKIYEETGPYIVITE NIALPHATVESGAKDVAIGFMRLKTPVTSGHRTNDPVKYLFSLSAKNNQAHIELLSELAN LLGNPDFLKFIKVVSSREEFKNYIEKAEGENKHE >gi|307679274|gb|GL456453.1| GENE 10 6422 - 6718 443 98 aa, chain + ## HITS:1 COG:no KEGG:GALLO_2119 NR:ns ## KEGG: GALLO_2119 # Name: not_defined # Def: PTS system, ascorbate family, IIA component # Organism: S.gallolyticus # Pathway: Ascorbate and aldarate metabolism [PATH:sga00053]; Phosphotransferase system (PTS) [PATH:sga02060] # 4 89 2 87 91 127 81.0 2e-28 MNSHKALVACRAGVGSSLMLKIKVNEVVKENNFPLEVEHSSLDGVPGFQGDMIITLPDVA NELIEKNLPQKIVGIANIVDKNEIKIKLEEAFIELEKQ >gi|307679274|gb|GL456453.1| GENE 11 6738 - 6986 160 82 aa, chain + ## HITS:1 COG:STM2342 KEGG:ns NR:ns ## COG: STM2342 COG3037 # Protein_GI_number: 16765669 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 75 7 81 463 65 41.0 2e-11 MDFIISFLSTPAVLLGLVAMIGLLAQKKSGTEVLTGTSKTIIGFLIFNAGGTIMTGALQN FNTLFQTGFLIKGVLLLKQRQH >gi|307679274|gb|GL456453.1| GENE 12 7040 - 7363 235 107 aa, chain + ## HITS:1 COG:STM2342 KEGG:ns NR:ns ## COG: STM2342 COG3037 # Protein_GI_number: 16765669 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 2 105 110 212 463 85 44.0 2e-17 MNLVIARITPFKNIFFTTGHSLFFACVLSLILKAHNFSDVAAIIVGGLLLGFFSAALPQL CQPFMRKITGSDATAIGHFNMVGYALSGYIGKLFSKYKDRTTEDIIG >gi|307679274|gb|GL456453.1| GENE 13 7303 - 8106 434 267 aa, chain - ## HITS:1 COG:L170983 KEGG:ns NR:ns ## COG: L170983 COG0534 # Protein_GI_number: 15672149 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Lactococcus lactis # 2 253 36 287 446 222 51.0 6e-58 MIIVGQTIGKEALAAVGATGSITFLIIGFAQGLTAGLSIITAQRFGAQDFRGVKKSFAVA IIISFTVTAILTVLSLVFLRPLLLLMQTPPDIIQQAQEFICVILGGMFASMAFNLLSNMI RALGDSRTPLFLLIFAVIINVILDLVFIINFHMGIAGAGYATVIAQISASLMCVIYIKRK IPLLQVSKSDFKIDKDTIFTHLNAGLPMAFQSSIIAIGAVVLQSALNSLGTDVVAAQAAA GRIDQFATQPMMSSVVRSLYLLNSLPI >gi|307679274|gb|GL456453.1| GENE 14 8491 - 9159 561 222 aa, chain + ## HITS:1 COG:NMA1801 KEGG:ns NR:ns ## COG: NMA1801 COG0588 # Protein_GI_number: 15794692 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Neisseria meningitidis Z2491 # 1 222 1 227 227 241 51.0 7e-64 MDVVLMRHGESEANFENYWTGWLDVSLTEKGQEQARKAGEKIKNAQIEFDAAFTSVLKRA SLTCQIILEESDQLWIPTFKTWRLNERHYGALVGKNKDEMAREFGADQVKRWRRDYYEMP PLVEENHFDRRYAQLADQDIPHGENLQMTVQRVAPLWQDEIAPLLGSGKNVLITGHGNSL RALVKYLEDVPEDQMDTIDIPNAQPIHYRFDKNLQIVNKSIL >gi|307679274|gb|GL456453.1| GENE 15 9262 - 9528 389 88 aa, chain + ## HITS:1 COG:lin0537 KEGG:ns NR:ns ## COG: lin0537 COG3830 # Protein_GI_number: 16799612 # Func_class: T Signal transduction mechanisms # Function: ACT domain-containing protein # Organism: Listeria innocua # 1 88 1 89 89 89 64.0 1e-18 MKAILTVVGKDKVGIIAGVSQKLAELNINILDVSQTIMEDYFTMMMMLQMQPEADLEAIK QALSQVENTLSVKISIQNEEIFNAMHKL >gi|307679274|gb|GL456453.1| GENE 16 9543 - 10886 1056 447 aa, chain + ## HITS:1 COG:lin0538 KEGG:ns NR:ns ## COG: lin0538 COG2848 # Protein_GI_number: 16799613 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 447 1 451 451 646 79.0 0 METKQILETIRMVEEENLDIRTITMGISLLDCIDASTEKTCQNIYNKITSKAKNLVKVGD EIASEFGIPIINKRISVTPIAIVASASGGQDCVAFARVLDKAAKAVGINFIGGYSALVEK GYQGADLSLIQSIPEALAETEFVCSSVNIGSTRAGINMDAVKLMGETIKQTAEASDMGCA KLVVFANAVEDNPFMAGAFHGVGEADCEINVGVSGPGVVKRALEKVKGESFDVVAETVKK TAFKITRMGQLVGQIASERLHVPFGIVDLSLAPTPAVGDSVALILEEMGLEAVGTHGTTA ALALLNDAVKKGGVMACNHVGGLSGAFIPVSEDAGMIKAVEEGYLNLEKLEAMTAICSVG LDMIAIPGDIPAETIAAMIADEAAIGVINHKTTAVRIIPAKDKKVGDSVEFGGLLGTAPV MRTNSAKSTDFIQRGGRIPAPIHSFKN >gi|307679274|gb|GL456453.1| GENE 17 10905 - 11417 251 170 aa, chain + ## HITS:1 COG:SP0805 KEGG:ns NR:ns ## COG: SP0805 COG0546 # Protein_GI_number: 15900698 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Streptococcus pneumoniae TIGR4 # 2 124 6 126 190 62 27.0 6e-10 MFDSYIWDFDGTLFDTYPIMLDSMMKALEDRQVVADPKAVYRLLKEKSSKALTEKYHLDF REFSDDFHQYETLDTRQPVTFDHVYDTLTQLKQQGSKHYILTHRTIASTRELLVKEGMLE FFEENARRLALIFLPPYSPQLNLMEGVWKWLKESVILTTSRKSNSRSAVS >gi|307679274|gb|GL456453.1| GENE 18 11788 - 12237 508 149 aa, chain - ## HITS:1 COG:no KEGG:CMM_2895 NR:ns ## KEGG: CMM_2895 # Name: not_defined # Def: hypothetical protein # Organism: C.michiganensis # Pathway: not_defined # 1 149 1 158 162 80 38.0 2e-14 MKLAEALLLRRDLESKLTLLREEIASSAVIQEGDTLDRSIDDLLLDYETTNQEFAQLVIA INQRNAVAKIGEQETIAAALEKREALRRSHAMLTATLEAAKVAPRMGRNEIRMIRTIDTK QITDRLNQTAKALRELDGQIQQTNWLVDL >gi|307679274|gb|GL456453.1| GENE 19 12728 - 13396 767 222 aa, chain + ## HITS:1 COG:lin0190 KEGG:ns NR:ns ## COG: lin0190 COG4166 # Protein_GI_number: 16799267 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 1 216 4 221 551 154 41.0 1e-37 MKKGLVVVGILSFLLAGCSTTGSSAKETDPEVQEISVSLPAELTTLDTTQTTDKVTFTVI QHLFEGSYRFDEKSQPVPGLAEEAVISEDGKTYTFKLKEEAKWSDGQQVQAADFAYAWKK LVDPKTMGPNAYLLDNVVNSQDIREGKADIATIGLETPDEKTFVVHLEQLQPSFLSVVSI GWLAPQRQSYVEEKGTAYGKTSEDLLYTGPFILKDWQQTGAE >gi|307679274|gb|GL456453.1| GENE 20 13397 - 13636 113 79 aa, chain + ## HITS:1 COG:no KEGG:EF3081 NR:ns ## KEGG: EF3081 # Name: not_defined # Def: pheromone binding protein # Organism: E.faecalis # Pathway: ABC transporters [PATH:efa02010] # 2 71 231 300 547 85 60.0 5e-16 MLAKNPEYYDQAVVKLDKIKGSTIKEENTGIQLFESGELDLQKISGLYVQQYQNNDSLVT QKDIANYFLDFMICQIKLE Prediction of potential genes in microbial genomes Time: Tue Jul 5 20:31:46 2011 Seq name: gi|307679273|gb|GL456454.1| Enterococcus faecalis TX0411 genomic scaffold Scfld165, whole genome shotgun sequence Length of sequence - 663 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 110 - 382 208 ## gi|255976491|ref|ZP_05427077.1| conserved hypothetical protein Predicted protein(s) >gi|307679273|gb|GL456454.1| GENE 1 110 - 382 208 90 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|255976491|ref|ZP_05427077.1| ## NR: gi|255976491|ref|ZP_05427077.1| conserved hypothetical protein [Enterococcus faecalis T2] conserved hypothetical protein [Enterococcus faecalis T2] # 1 90 1 90 90 177 98.0 2e-43 MNLGFYTWSFCLLVLTNMRNLPIARLAIEKGCRKAHGHEGANWLHVNFFAEFGRSLKNKY YRTYLVNQRVFKGLGKDKLPKEYGQNKGGT Prediction of potential genes in microbial genomes Time: Tue Jul 5 20:31:53 2011 Seq name: gi|307679272|gb|GL456455.1| Enterococcus faecalis TX0411 genomic scaffold Scfld166, whole genome shotgun sequence Length of sequence - 911 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 55 - 243 187 ## EFA0053 hypothetical protein 2 1 Op 2 . + CDS 247 - 360 75 ## EF0145 hypothetical protein 3 1 Op 3 . + CDS 371 - 911 861 ## EF_B0010 surface exclusion protein PrgA Predicted protein(s) >gi|307679272|gb|GL456455.1| GENE 1 55 - 243 187 62 aa, chain + ## HITS:1 COG:no KEGG:EFA0053 NR:ns ## KEGG: EFA0053 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 62 1 62 101 89 100.0 4e-17 MTKKEQSIWRKEMLALMNEDADWYRNEDTERFKRIQELAKKIETASTRQFSSHISKERFE AY >gi|307679272|gb|GL456455.1| GENE 2 247 - 360 75 37 aa, chain + ## HITS:1 COG:no KEGG:EF0145 NR:ns ## KEGG: EF0145 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 37 65 101 101 67 97.0 1e-10 MGLQFKEIAEEFHITTTALQQWHKDNGYPIYNKNNRK >gi|307679272|gb|GL456455.1| GENE 3 371 - 911 861 180 aa, chain + ## HITS:1 COG:no KEGG:EF_B0010 NR:ns ## KEGG: EF_B0010 # Name: prgA # Def: surface exclusion protein PrgA # Organism: E.faecalis # Pathway: not_defined # 1 180 1 180 891 181 99.0 1e-44 MKKIASTGLSILVATGVAGIGGNEVQAAEQAQPKTPENSSTEQPTVKATQTTEQAITEKQ QQVTEKQAIVDQKQQVADTAKKEKDTIDQSVKDQQAVVDQNKDALDQSQQAVTDQQAVVD EAKKVVDEATPSAIEKAKEQVATDTQAVDEQQKVVDQAQTDVNQQQAVVDEKAKETNAAK Prediction of potential genes in microbial genomes Time: Tue Jul 5 20:32:18 2011 Seq name: gi|307679271|gb|GL456456.1| Enterococcus faecalis TX0411 genomic scaffold Scfld167, whole genome shotgun sequence Length of sequence - 66588 bp Number of predicted genes - 79, with homology - 77 Number of transcription units - 27, operones - 14 average op.length - 4.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 200 187 ## gi|315146075|gb|EFT90091.1| conserved hypothetical protein + Prom 214 - 273 1.9 2 2 Op 1 . + CDS 299 - 877 223 ## MPTP_1437 hypothetical protein 3 2 Op 2 . + CDS 882 - 1838 887 ## LLKF_1041 phage replisome organiser 4 2 Op 3 . + CDS 1842 - 2366 436 ## EF2127 hypothetical protein + Prom 2395 - 2454 4.6 5 3 Tu 1 . + CDS 2494 - 2721 296 ## EF1438 hypothetical protein + Prom 2746 - 2805 2.0 6 4 Op 1 . + CDS 2853 - 3242 129 ## EF2124 methyltransferase, putative 7 4 Op 2 . + CDS 3244 - 3564 86 ## EF_B0046 hypothetical protein 8 4 Op 3 . + CDS 3585 - 3995 355 ## gi|282598710|ref|YP_003358842.1| hypothetical protein PHIEF11_0052 9 4 Op 4 . + CDS 3992 - 4159 194 ## gi|282598733|ref|YP_003358843.1| hypothetical protein PHIEF11_0053 10 4 Op 5 . + CDS 4152 - 4757 568 ## EF2118 hypothetical protein 11 4 Op 6 . + CDS 4771 - 5256 283 ## EF1444 hypothetical protein 12 4 Op 7 . + CDS 5257 - 5439 316 ## EF2830 hypothetical protein + Prom 5441 - 5500 3.9 13 5 Op 1 . + CDS 5622 - 5822 202 ## EF2829 hypothetical protein 14 5 Op 2 . + CDS 5785 - 5904 106 ## 15 6 Tu 1 . + CDS 5967 - 6383 287 ## EF2024 ArpU family transcriptional regulator + Term 6390 - 6426 -1.0 + TRNA 6608 - 6680 80.1 # Asn GTT 0 0 + Prom 6608 - 6667 78.3 16 7 Op 1 . + CDS 6847 - 7296 373 ## gi|282598758|ref|YP_003358851.1| SbcC domain protein + Term 7301 - 7331 1.2 17 7 Op 2 . + CDS 7351 - 7872 522 ## COG1475 Predicted transcriptional regulators 18 7 Op 3 . + CDS 7859 - 8467 375 ## YpsIP31758_2230 hypothetical protein + Prom 8524 - 8583 2.5 19 8 Op 1 . + CDS 8604 - 8792 232 ## gi|256617869|ref|ZP_05474715.1| predicted protein 20 8 Op 2 . + CDS 8837 - 9757 462 ## Psyr_2837 hypothetical protein 21 8 Op 3 . + CDS 9805 - 10599 577 ## COG5484 Uncharacterized conserved protein 22 8 Op 4 . + CDS 10592 - 12046 933 ## Cbei_1636 hypothetical protein 23 8 Op 5 . + CDS 12051 - 13664 1135 ## LEGAS_1590 phage portal protein 24 8 Op 6 . + CDS 13670 - 14608 666 ## COG5585 NAD+--asparagine ADP-ribosyltransferase 25 8 Op 7 . + CDS 14609 - 14878 165 ## gi|282598771|ref|YP_003358795.1| hypothetical protein PHIEF11_0005 26 8 Op 8 . + CDS 14883 - 15002 155 ## 27 8 Op 9 . + CDS 14971 - 15249 297 ## CLJ_B1819 gp9 + Prom 15292 - 15351 2.7 28 9 Op 1 . + CDS 15379 - 16020 712 ## BH3529 hypothetical protein 29 9 Op 2 . + CDS 16033 - 16374 405 ## LSEI_1928 hypothetical protein 30 9 Op 3 . + CDS 16397 - 17410 1078 ## LCABL_13300 hypothetical protein 31 9 Op 4 . + CDS 17484 - 17816 333 ## LACR_1139 hypothetical protein 32 9 Op 5 . + CDS 17813 - 18148 283 ## LACR_1140 hypothetical protein 33 9 Op 6 . + CDS 18123 - 18503 231 ## M28_Spy0985 phage protein 34 9 Op 7 . + CDS 18500 - 18889 232 ## LACR_1767 hypothetical protein 35 9 Op 8 . + CDS 18905 - 19498 702 ## MPTP_1482 phage tail protein 36 9 Op 9 . + CDS 19514 - 19972 620 ## gi|307292403|ref|ZP_07572259.1| hypothetical protein HMPREF9509_02696 + Term 19984 - 20019 3.3 37 10 Tu 1 . + CDS 20027 - 20377 385 ## SPy_0992 hypothetical protein + Prom 20381 - 20440 2.2 38 11 Op 1 . + CDS 20476 - 20727 118 ## gi|282598753|ref|YP_003358808.1| hypothetical protein PHIEF11_0018 39 11 Op 2 . + CDS 20743 - 24150 2976 ## M28_Spy1236 phage protein 40 11 Op 3 . + CDS 24151 - 25080 776 ## EF1289 tail protein, putative 41 11 Op 4 . + CDS 25097 - 27112 1424 ## EF1290 structural protein, putative 42 11 Op 5 . + CDS 27113 - 27286 290 ## gi|256961421|ref|ZP_05565592.1| predicted protein 43 11 Op 6 . + CDS 27297 - 29060 1674 ## EF1291 hypothetical protein + Term 29095 - 29131 4.0 44 12 Op 1 . + CDS 29140 - 29361 206 ## gi|256961423|ref|ZP_05565594.1| predicted protein 45 12 Op 2 . + CDS 29358 - 29561 250 ## EF2803 holin 46 12 Op 3 . + CDS 29566 - 30825 1384 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) 47 12 Op 4 . + CDS 30838 - 31218 379 ## gi|315172153|gb|EFU16170.1| hypothetical protein HMPREF9519_02873 + Prom 31221 - 31280 1.5 48 12 Op 5 . + CDS 31307 - 32572 1139 ## COG0739 Membrane proteins related to metalloendopeptidases + Term 32584 - 32625 7.0 - Term 32572 - 32611 7.0 49 13 Tu 1 . - CDS 32636 - 34138 831 ## BBPR_0060 hypothetical protein - Prom 34309 - 34368 11.8 - Term 34265 - 34308 -0.8 50 14 Tu 1 . - CDS 34495 - 35076 333 ## EF2795 LysM domain-containing protein - Prom 35140 - 35199 12.5 - Term 35395 - 35433 5.4 51 15 Tu 1 . - CDS 35447 - 35827 489 ## EF2205 hypothetical protein - Prom 35907 - 35966 8.8 - Term 35949 - 36001 15.8 52 16 Tu 1 . - CDS 36086 - 37324 1613 ## COG2309 Leucyl aminopeptidase (aminopeptidase T) - Prom 37359 - 37418 5.1 + Prom 37464 - 37523 4.8 53 17 Op 1 . + CDS 37575 - 38147 635 ## COG1309 Transcriptional regulator + Term 38196 - 38241 3.0 + Prom 38202 - 38261 2.4 54 17 Op 2 . + CDS 38305 - 38778 437 ## COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) + Term 38790 - 38842 15.0 - Term 38776 - 38828 15.0 55 18 Tu 1 . - CDS 38852 - 39295 735 ## COG0716 Flavodoxins - Prom 39323 - 39382 6.0 + Prom 39384 - 39443 5.5 56 19 Op 1 2/0.000 + CDS 39470 - 40234 888 ## COG0024 Methionine aminopeptidase 57 19 Op 2 . + CDS 40250 - 41158 931 ## COG1295 Predicted membrane protein + Prom 41184 - 41243 4.9 58 20 Tu 1 1/0.333 + CDS 41269 - 42405 868 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase + Term 42452 - 42517 4.2 + Prom 42439 - 42498 8.4 59 21 Op 1 . + CDS 42533 - 43315 761 ## COG1216 Predicted glycosyltransferases 60 21 Op 2 . + CDS 43315 - 44142 705 ## EF2196 glycosyl transferase, group 2 family protein 61 21 Op 3 1/0.333 + CDS 44146 - 44859 738 ## COG0463 Glycosyltransferases involved in cell wall biogenesis + Prom 44870 - 44929 5.6 62 22 Op 1 13/0.000 + CDS 44981 - 45847 1072 ## COG1209 dTDP-glucose pyrophosphorylase 63 22 Op 2 11/0.000 + CDS 45860 - 46432 809 ## COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 64 22 Op 3 11/0.000 + CDS 46457 - 47485 1208 ## COG1088 dTDP-D-glucose 4,6-dehydratase + Term 47523 - 47562 1.0 65 22 Op 4 . + CDS 47578 - 48420 1109 ## COG1091 dTDP-4-dehydrorhamnose reductase 66 22 Op 5 . + CDS 48479 - 49204 747 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 67 22 Op 6 . + CDS 49204 - 49569 450 ## EF2189 hypothetical protein 68 22 Op 7 . + CDS 49562 - 50599 598 ## EF2188 racemase domain-containing protein + Term 50606 - 50655 13.3 - Term 50592 - 50643 12.1 69 23 Tu 1 . - CDS 50646 - 50987 339 ## EF2184 hypothetical protein + Prom 51105 - 51164 7.0 70 24 Op 1 26/0.000 + CDS 51235 - 52029 678 ## COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component 71 24 Op 2 4/0.000 + CDS 52042 - 53259 1371 ## COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component 72 24 Op 3 11/0.000 + CDS 53249 - 56392 3278 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 73 24 Op 4 . + CDS 56404 - 58545 2256 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 74 24 Op 5 . + CDS 58579 - 60549 1686 ## EF2179 hypothetical protein 75 24 Op 6 . + CDS 60578 - 61879 930 ## EF2178 hypothetical protein + Prom 61904 - 61963 2.7 76 25 Tu 1 . + CDS 61985 - 63382 1206 ## COG2148 Sugar transferases involved in lipopolysaccharide synthesis + Term 63385 - 63411 -1.0 + Prom 63411 - 63470 5.9 77 26 Op 1 1/0.333 + CDS 63502 - 64335 825 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 78 26 Op 2 . + CDS 64351 - 65193 468 ## COG3475 LPS biosynthesis protein + Term 65217 - 65258 7.3 + Prom 65409 - 65468 9.6 79 27 Tu 1 . + CDS 65513 - 66587 852 ## EF2174 hypothetical protein Predicted protein(s) >gi|307679271|gb|GL456456.1| GENE 1 3 - 200 187 65 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315146075|gb|EFT90091.1| ## NR: gi|315146075|gb|EFT90091.1| conserved hypothetical protein [Enterococcus faecalis TX2141] # 1 65 248 312 312 97 100.0 4e-19 ALKTETINNKTVDTATGEIITEEAPKTCKKQQEKTVTLRLTAEHQKLVALNNFIINNGIQ VEVIE >gi|307679271|gb|GL456456.1| GENE 2 299 - 877 223 192 aa, chain + ## HITS:1 COG:no KEGG:MPTP_1437 NR:ns ## KEGG: MPTP_1437 # Name: not_defined # Def: hypothetical protein # Organism: M.plutonius # Pathway: not_defined # 1 192 37 228 228 266 62.0 5e-70 MYFDYTGPREVEIRFIDPRKFSVAQRRFIFAMLEDIFSFTGQETEVLKEMFYLRFEALQG YEISLRNDSENTMDDATILANIILNFIFENNIPFRKGYDILPANQEYYFYKCITKRVCCI CGKTGADIDHFDKALGRRKRKSVDHTEYTYAGLCRCHHTEKHNIGITAFKKKYHVKGIKL NQETIKKLHIGG >gi|307679271|gb|GL456456.1| GENE 3 882 - 1838 887 318 aa, chain + ## HITS:1 COG:no KEGG:LLKF_1041 NR:ns ## KEGG: LLKF_1041 # Name: pp112 # Def: phage replisome organiser # Organism: L.lactis_KF147 # Pathway: not_defined # 1 155 1 154 270 209 69.0 1e-52 MAEISWIKLSTSLPDNKKIKRIRKLPDGDRVILFWVFLLARAGESNQKGGLFLTDTLPYS DEDLAADFDFTVEFVKFAILTLEKYSMVTTYEDVIFIKNWEEYQAIDGMEKVKEQNRIRQ AKYREKQKQLSLSNVTSNVTRNADVTLSNGTDKDIDKEIDKEIDKDNKEESKKPPCKYSD EHLRLAQKLQNNLINDFPSEMKKVKIEKWADVFRLIEERDQQTIAAIDYVLDWLPTNSFW FGNIRSASKLRAQFEKLKFEIKNEKERGQQRTTYQRQNVRTENLPEWAKEPNKQQEEKLS PEEQLELDRQIKEYMEGK >gi|307679271|gb|GL456456.1| GENE 4 1842 - 2366 436 174 aa, chain + ## HITS:1 COG:no KEGG:EF2127 NR:ns ## KEGG: EF2127 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 20 85 26 91 110 79 51.0 4e-14 MTKYPTQELKNKRKAHVLFMSTEVMKNIFELGYPFEFYEASHQFAIHSPLGVIDYFAISG TWVVRKGQDRGKGIRKMKQYIKKRVGDYVEKVKVVKCSGYLDKEGNITNQIKQAMHFTDD ELANLAAEVAGGKVVNVVIPPEKPKQLREKAKEESFQEKTKKKTKSNQSWMNKK >gi|307679271|gb|GL456456.1| GENE 5 2494 - 2721 296 75 aa, chain + ## HITS:1 COG:no KEGG:EF1438 NR:ns ## KEGG: EF1438 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 75 1 75 75 137 92.0 1e-31 MKLTSVTFKPSAERFPPIVAIDLDQLTPDEYVTLRNLGYDTQLSKITKRTFEELEGHLGI RGDVAKKNGFYVLVK >gi|307679271|gb|GL456456.1| GENE 6 2853 - 3242 129 129 aa, chain + ## HITS:1 COG:no KEGG:EF2124 NR:ns ## KEGG: EF2124 # Name: not_defined # Def: methyltransferase, putative # Organism: E.faecalis # Pathway: not_defined # 1 129 26 154 160 238 87.0 6e-62 MDNREHYEKLDSGHVIDVNPNLVADFRKMPFEDNSFYHVVFDPPHLLRCGNNSWLAKKYG KLNEKTWKEDIQKGFHECMRVLKPNGTLVFKWNEEQIKLSEILSTIDCEPLYGNKRAKTH WLVFMKAGE >gi|307679271|gb|GL456456.1| GENE 7 3244 - 3564 86 106 aa, chain + ## HITS:1 COG:no KEGG:EF_B0046 NR:ns ## KEGG: EF_B0046 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 106 4 109 109 155 75.0 4e-37 MNEQINLLELDNDKLWQFYGHYCNDDWSAKTETVNGVTDIVLGFRVKLSKNELRKICRDA IEISRIKYGYSVRFLTNNVKKELFVRFDNYTTSKKRDVFEHINLYF >gi|307679271|gb|GL456456.1| GENE 8 3585 - 3995 355 136 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282598710|ref|YP_003358842.1| ## NR: gi|282598710|ref|YP_003358842.1| hypothetical protein PHIEF11_0052 [Enterococcus phage phiEf11] phage hypothetical protein TIGR01671 [Enterococcus faecalis TX0411] conserved hypothetical protein [Enterococcus phage phiEf11] phage hypothetical protein TIGR01671 [Enterococcus faecalis TX0411] # 1 136 1 136 136 268 100.0 1e-70 MIPKFRARDQRGNWHIGLLTFMFGQYAIVNESDENSVYLIDKETVGQSTGLKDKNGVEIF EGDILKIIEVTNEGISEYITDVIWEDCSFVFKSEGVDYYDSFLGAFSGDPNKTYPLFELL VIGNVWDNLKLLERTE >gi|307679271|gb|GL456456.1| GENE 9 3992 - 4159 194 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282598733|ref|YP_003358843.1| ## NR: gi|282598733|ref|YP_003358843.1| hypothetical protein PHIEF11_0053 [Enterococcus phage phiEf11] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_02668 [Enterococcus faecalis TX0411] hypothetical protein PHIEF11_0053 [Enterococcus phage phiEf11] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_02668 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9495_00090 [Enterococcus faecalis TX2141] # 1 55 1 55 55 87 100.0 4e-16 MKRLKISYIDLAVIIESIYYGEDEDVSDIDDLLKYLRNNGHLSTVLTVSRGISDE >gi|307679271|gb|GL456456.1| GENE 10 4152 - 4757 568 201 aa, chain + ## HITS:1 COG:no KEGG:EF2118 NR:ns ## KEGG: EF2118 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 24 201 17 184 184 179 57.0 8e-44 MNKQEFIETLEEIRANINRNAEISDYTDFSRGKKDAYNNAIGLAKQIDEPEKVVVPKFVA EWLDKHKYSTDIIDLFLSVEYATDSDGFVAEKWDYSGEFYDWLSNSADIQFTLCDAMRYG YEVEKEPTIHELKILPEYFEAVVSGNKRFEIRKNDRNYKKGDILRLNEYQEGQYTGDVHV SEITYITDYAQQDGYVVLGIK >gi|307679271|gb|GL456456.1| GENE 11 4771 - 5256 283 161 aa, chain + ## HITS:1 COG:no KEGG:EF1444 NR:ns ## KEGG: EF1444 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 161 1 161 161 308 97.0 4e-83 MKTDLTRQAEKCLWHYTNKMGVFGCFEVTIGWFGKERVDFVTYSTDNTIRCYEIKVTLAD LKSSAKQTFLGDYNYLVVTNELWEKIQANPDLKWKYSNQGILIFSELRHNLGITSVKKAK KQNVTLGTRATVLESMVRSLNREVEKFYKVNPFWGLSEEVK >gi|307679271|gb|GL456456.1| GENE 12 5257 - 5439 316 60 aa, chain + ## HITS:1 COG:no KEGG:EF2830 NR:ns ## KEGG: EF2830 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 60 1 60 60 86 80.0 4e-16 MEQLLLTKTGENEIGINATGMDDNEIVFTLAAALIGYSKELGLTEAILNESMSVLWKDGE >gi|307679271|gb|GL456456.1| GENE 13 5622 - 5822 202 66 aa, chain + ## HITS:1 COG:no KEGG:EF2829 NR:ns ## KEGG: EF2829 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 65 1 68 77 62 47.0 6e-09 MSYPEVYILGRQVDGVYVEYSEPYLSKIEAELDKHHYEIGQSMSHDAGSWKILKYGRPIT LEVQHG >gi|307679271|gb|GL456456.1| GENE 14 5785 - 5904 106 39 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MADQLHWRCNMGKKKSKIKKKKRRLQEKAIANGTQNSKK >gi|307679271|gb|GL456456.1| GENE 15 5967 - 6383 287 138 aa, chain + ## HITS:1 COG:no KEGG:EF2024 NR:ns ## KEGG: EF2024 # Name: not_defined # Def: ArpU family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 138 1 138 138 218 84.0 8e-56 MIQLLKEVDFSQTRANARAVLKNFRRLDRIAGRSLVDVRSPIITDMPKGIKHGNKAEDAL IQMMDVEAERDAILTALMSLSIISRQILHYSFCVQDHYSNYKIAREVGYSERSIQRMKSE ALIEFAEAYRNGKIIAYK >gi|307679271|gb|GL456456.1| GENE 16 6847 - 7296 373 149 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282598758|ref|YP_003358851.1| ## NR: gi|282598758|ref|YP_003358851.1| SbcC domain protein [Enterococcus phage phiEf11] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_02676 [Enterococcus faecalis TX0411] SbcC domain protein [Enterococcus phage phiEf11] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_02676 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9495_00099 [Enterococcus faecalis TX2141] # 1 149 1 149 149 237 100.0 2e-61 METNNTFSNLLKNFDYPRIEPSMKYAEKLETGSNWLGDINREKKQLQELQKLANESTLKS EELLKQIAENTSYIKDLVMINRETQLNTEELTYVMKSIYKVSKAENKQEADSLFSQAIQV INDSGEAAGNIANLTSLLLGIYTFVSTII >gi|307679271|gb|GL456456.1| GENE 17 7351 - 7872 522 173 aa, chain + ## HITS:1 COG:lin1737_1 KEGG:ns NR:ns ## COG: lin1737_1 COG1475 # Protein_GI_number: 16800805 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 1 144 1 141 229 129 49.0 2e-30 MHIEKMKLSDLRPAEYNPRVKLNPGMAEYEKLKQSILEFGFVDPPIFNKNTGNLVGGHQR VTVAKELGLFDEIEVSVVDLPLDKEKALSIALNKISGNWDEDKLTELLNELTADNLELTG FDNEELEILIEDADIPNFEPGSIDDQGDLTKLEPKFVKCPCCGEEFDLRDVES >gi|307679271|gb|GL456456.1| GENE 18 7859 - 8467 375 202 aa, chain + ## HITS:1 COG:no KEGG:YpsIP31758_2230 NR:ns ## KEGG: YpsIP31758_2230 # Name: not_defined # Def: hypothetical protein # Organism: Y.pseudotuberculosis_IP31758 # Pathway: not_defined # 2 200 4 202 204 251 62.0 1e-65 MLKVDWATHEATKYACTHFHYSKSVPVGKLIKIGAWEDGQFIGVVIFSRGANKSIGSPYG LEQTECCELTRVALTNHKTFVSEILAKAIKFLKEFNPSMQLIVSYADTDQNHHGGIYQAT NWIYTGKTDGERYFIVNGKKTHPKSIHAKYGTGSQRLEFLHKHVDPKASIYESKGKHKYL MPLNKKIRKKIIKLSKPYPKAK >gi|307679271|gb|GL456456.1| GENE 19 8604 - 8792 232 62 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256617869|ref|ZP_05474715.1| ## NR: gi|256617869|ref|ZP_05474715.1| predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis ATCC 4200] # 1 62 22 83 83 92 95.0 1e-17 METFDYEVQQALEKQKIAEENNKIIRAAKAQWISNFKAGHIKLNTVKDLKDLIEIESHLK EL >gi|307679271|gb|GL456456.1| GENE 20 8837 - 9757 462 306 aa, chain + ## HITS:1 COG:no KEGG:Psyr_2837 NR:ns ## KEGG: Psyr_2837 # Name: not_defined # Def: hypothetical protein # Organism: P.syringae_B728a # Pathway: not_defined # 1 179 17 195 321 127 35.0 6e-28 MAKEKNEKKANSDKGEIKETNLKKCFFITPIGEKNSNEFKKLKAIVENVLNKVLEKYDYE LIIAHEIHSMGSIGDQVFTNIIGADLVISNLSGWNANVMYETAVAHSFGKPTIMICESGT ELPFDLINDRTIFFEDTIEGTGALIEELDKKIPKISEDSTADNPVTRVIRRKALEDDLKG ETDNDSRILGLLLDMDKRLSMYEDSNIIEKKKINTGNIERIRAKIYYKNEGNINVIDELE GYLFEKYRDTVQIVSVTSGNRYEDRNSEVMKVIIVNSLYSPAKIFKDIEITLGKLGMVDI SVKVFP >gi|307679271|gb|GL456456.1| GENE 21 9805 - 10599 577 264 aa, chain + ## HITS:1 COG:lin1733 KEGG:ns NR:ns ## COG: lin1733 COG5484 # Protein_GI_number: 16800801 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 5 224 11 252 294 108 34.0 9e-24 MDKKEQAKKYYEKGWKYKDISEKLSVPLNTLKSWRKRDKWERGGATKEVQPTNRGAPKGN QNAIGNKGNSRASPPKRNKNAVKTGEYETIFADMLSDEEKDIYSTMNDDPFFILDEEIRI LKIRQYRMLKRIKDAEAGLNDEEVERLQQLRKVKEPSVIDGKMVTVKREVLKDVQVTRKT FRKLDDILAIEDALTRVSNQLIKAIKQQKELLSTDKKSLLMEAQIEKIKLETDKLSGGSS NDEADSWKQAVINAANKRAVEENE >gi|307679271|gb|GL456456.1| GENE 22 10592 - 12046 933 484 aa, chain + ## HITS:1 COG:no KEGG:Cbei_1636 NR:ns ## KEGG: Cbei_1636 # Name: not_defined # Def: hypothetical protein # Organism: C.beijerinckii # Pathway: not_defined # 15 461 9 454 470 534 58.0 1e-150 MNKEFIPFADIGAAIDYYYDKPVAFCQDILHLDPDEWQDKVLDDLAKFPKVSVRSGQGVG KTALEAGAILWFLTCRPYAKVIATAPTMKQLYDVLWAEVAKWLNNSLIKDLLKWTKTKIY MVGDSERWFATARTATKPENMQGFHEDHMLIVVDEASGVADPIMEAILGTLSGFDNKLLM CGNPNNIEGVFYDSHNTDRDKYRTHKVSSYDSKRTNKENIQMLIDKYGENSDVARVRIYG EFPKGALDSFISLEIVEFAKDINISDSELKHVREGHIGVDVARFGDDSTIVFPRIGAKAL PFEKYSKQDTMQTTGRVLKAAKRMMDDYPTIKKVFIKVDDTGVGGGVTDRLKEVISDEKL PYEVIPVNNGESSTDDYYANKGTQIWGDVKELLEQNISNSINGQGPTIELPDNANLIKEL STRKFKMTSNGKIRLESKEDMKKRNVGSPDIADALTLAFYEPFRPEPINVKKAINTFKKL GLSR >gi|307679271|gb|GL456456.1| GENE 23 12051 - 13664 1135 537 aa, chain + ## HITS:1 COG:no KEGG:LEGAS_1590 NR:ns ## KEGG: LEGAS_1590 # Name: not_defined # Def: phage portal protein # Organism: L.gasicomitatum # Pathway: not_defined # 5 508 4 497 521 354 40.0 5e-96 MNNKLLNGSRFDKEANLVYKVPVSKLPTRIMQYSNGEKEEVVDFEHQDVFNMIVKFVRHH KEKQVPRLKELKRYSLAQNNIKFTEDKSENRADNKIANDWARFIVNFKKGVLLGNPLKYN GDKTIADKINDFSSKSNEDYHNQLMLDDLLVYGRAFEYIGRDEYGKEMLAKFSAEETFVI YDTTTNKNSVCAIHCYDLEFNDETFSYIDIYANDGYFYQHESKNQDYEQSKLIDKYQTFF DSIQVNEWINNEERLGDFETVLDNIDAYDLSQSSMANFQQDSSEAYLVIKGNPETAIGDE EGNSAVDVLNDMIKARLLILGDKKYYGDGQTGSDPDAYYLKKEYDTQGTEAYNDRLVSDM LRFTSLIDFTDENIGSNQSGIGFRFKGWGSDNDRKNKERMVKKAIMRRLRLLTYSWSLKD NLNKPTGLAEKVKSFFVSRDNDKELLFEKVNAIEILFTPNVPQSDKEIMEVIAGMVGIVS DETLCEMAAKLTGVPVQTELNRLKKENQPDTLSDEEAAKLKEKQAEFLANQSETEED >gi|307679271|gb|GL456456.1| GENE 24 13670 - 14608 666 312 aa, chain + ## HITS:1 COG:SPy0975 KEGG:ns NR:ns ## COG: SPy0975 COG5585 # Protein_GI_number: 15674985 # Func_class: T Signal transduction mechanisms # Function: NAD+--asparagine ADP-ribosyltransferase # Organism: Streptococcus pyogenes M1 GAS # 3 296 8 309 541 140 32.0 4e-33 MSYLKDREDAWIKEQMKLDRNREKEIVKQLQNAIDAIQTEIEANWDRFSNGQKITISEAR KMANKMDVKRFERKAKEYVKNKDFSPQANKELKIYNLVMRVSRLELLKSQIGLELITLFD ELDKWGYSQLTEAAKEEYLRQAGILGETVQENYSSKVRKIVNASFKSSDFPSFSDNIWQN FVEMKADLEKIITQAITQGKNPRAVAKEIAKFLKPNQLNIRYKLNRLMMTEISGIQTDIQ KQSYLDADIEEYDYIAEPFACEICKKVAKGSPYRVLKMKKGINAPYMHPHCKCSTVPKVS EDYDKSLKERCL >gi|307679271|gb|GL456456.1| GENE 25 14609 - 14878 165 89 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282598771|ref|YP_003358795.1| ## NR: gi|282598771|ref|YP_003358795.1| hypothetical protein PHIEF11_0005 [Enterococcus phage phiEf11] hypothetical protein HMPREF9509_02685 [Enterococcus faecalis TX0411] conserved hypothetical protein [Enterococcus phage phiEf11] hypothetical protein HMPREF9509_02685 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9495_00108 [Enterococcus faecalis TX2141] # 1 89 1 89 89 146 100.0 5e-34 MDNLYKCNQCHKYTPLVRKSENITKDIEHHYAECANCGYKATIMYMNTEIKLLMHEQRKT NFGTKKKGKLTEKLNRLISELRKEVEESL >gi|307679271|gb|GL456456.1| GENE 26 14883 - 15002 155 39 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTERRDSMNDDPYDYLDADYEEYLRKEEVNESTKETSSD >gi|307679271|gb|GL456456.1| GENE 27 14971 - 15249 297 92 aa, chain + ## HITS:1 COG:no KEGG:CLJ_B1819 NR:ns ## KEGG: CLJ_B1819 # Name: not_defined # Def: gp9 # Organism: C.botulinum_Ba4 # Pathway: not_defined # 1 92 2 81 81 80 46.0 3e-14 MKARKKPVVIETVIFLGFYGKDRNFSERPKWLERAIYVDKKIEFFDVPEKLTIHTIEGPI YAIPGDYIIKGVNGELYPCKPDIFEKTYEIIE >gi|307679271|gb|GL456456.1| GENE 28 15379 - 16020 712 213 aa, chain + ## HITS:1 COG:no KEGG:BH3529 NR:ns ## KEGG: BH3529 # Name: not_defined # Def: hypothetical protein # Organism: B.halodurans # Pathway: not_defined # 2 160 10 179 239 65 35.0 2e-09 MKTKKLLLPMHLQFFADNLDTGTGGTDQPAGGQEQTPPGDGGKDKGNGKTFSRDEVAKMI AAEVSKTKEAWEKELQEKQEEADKLAKMNDQEKNDHEKQKLLEKIKELESAQNLAEMSKT ATKMFSDKGIQATEGLLSLVVKETAEETSENVKAVVKLIETERETIKADFEKRIGSKLPL DGNADASLSRGAQMAKQANNQNKAPENNLWATN >gi|307679271|gb|GL456456.1| GENE 29 16033 - 16374 405 113 aa, chain + ## HITS:1 COG:no KEGG:LSEI_1928 NR:ns ## KEGG: LSEI_1928 # Name: not_defined # Def: hypothetical protein # Organism: L.casei # Pathway: not_defined # 2 100 1 99 167 138 66.0 6e-32 MVYVKKTQTYQDINFLKSEKFISFTKQVDETTEGVVKGVLPAGSVFPKNDATAEGITIND VDVSNGPQPVGVIVEGHVLIKRLPAEPSSEAQKAMRELKFYDANGKMLAVPTA >gi|307679271|gb|GL456456.1| GENE 30 16397 - 17410 1078 337 aa, chain + ## HITS:1 COG:no KEGG:LCABL_13300 NR:ns ## KEGG: LCABL_13300 # Name: not_defined # Def: hypothetical protein # Organism: L.casei_BL23 # Pathway: not_defined # 1 332 1 335 346 376 57.0 1e-103 MANIAELFSQKNVLDYVNNRQAPVLLGETLFPARKVQGLEFDVLKAGSKIPTIASVHAFD TEAEIASRVGSKTAQELAFIKRKIQLKEKDLIALRNPRTAEEQRYLEQEVYNDVYSMVSS VNARVEKMRMEVLANGKVTLDENGLDLVVDYGVPADHKDTADFSAPDTDIIGLLTEWASK LDVMPTRILTSTKVRNAILKNDGIKAFFKTSGLLPNIGSLNQMLQQFNLPTIVTYDAKYN KENAEGVLVKERYFPENKLVMFGDENPGESIFGVTPEESRLLSTGSNNYTVGNIFAMVYE SNLDPVGTWTKASGTALPSFPEADNVFQATVLPDSKK >gi|307679271|gb|GL456456.1| GENE 31 17484 - 17816 333 110 aa, chain + ## HITS:1 COG:no KEGG:LACR_1139 NR:ns ## KEGG: LACR_1139 # Name: not_defined # Def: hypothetical protein # Organism: L.lactis_SK11 # Pathway: not_defined # 3 109 2 109 110 85 47.0 5e-16 MPSITDDITKLLNSPANEKLEVIERRTRERLNSLLNVSETPSKFDSIIYEVVLKRFNRIG QEGMISYSQEGLTMAFPDSDFSEYEKQINDYLNEEKEVQYKKLRGKARFV >gi|307679271|gb|GL456456.1| GENE 32 17813 - 18148 283 111 aa, chain + ## HITS:1 COG:no KEGG:LACR_1140 NR:ns ## KEGG: LACR_1140 # Name: not_defined # Def: hypothetical protein # Organism: L.lactis_SK11 # Pathway: not_defined # 1 101 1 101 103 132 59.0 5e-30 MRYTDEITFVKKSSESHYDPNSGEWIEEEPFRKTTDVNVTDIGTDRSITIFGSIKEGAKV IRTQPLFVIPEFDYIEFEGKAWEVITSRVPALRNSLIIQEVIIDGNKSSKN >gi|307679271|gb|GL456456.1| GENE 33 18123 - 18503 231 126 aa, chain + ## HITS:1 COG:no KEGG:M28_Spy0985 NR:ns ## KEGG: M28_Spy0985 # Name: not_defined # Def: phage protein # Organism: S.pyogenes_MGAS6180 # Pathway: not_defined # 6 126 10 121 121 86 45.0 4e-16 MAISQVRINGLAGISKKLKRNAQLDDVKKVVRNNTAELTANMQAEAGKVLTGHREGKKFV KPTGATKRSIVMRLSNNGFSGHTGPGTEYAPYLIHGTRFMVKRDFFLPPLKQQKVKFRTD LERLMK >gi|307679271|gb|GL456456.1| GENE 34 18500 - 18889 232 129 aa, chain + ## HITS:1 COG:no KEGG:LACR_1767 NR:ns ## KEGG: LACR_1767 # Name: not_defined # Def: hypothetical protein # Organism: L.lactis_SK11 # Pathway: not_defined # 1 128 1 128 129 185 67.0 6e-46 MIKTRDQSIFDEVYKKCQSLGYEIYDYKPMNDVGYPFVELEDTQTLHQANKTDIKGSVTL NLSVWGLAKKRKQISDMASAIFAEALSISETEGYYWSLNIQSSGIRLVDDISTNTPLKRA MISLEFKIL >gi|307679271|gb|GL456456.1| GENE 35 18905 - 19498 702 197 aa, chain + ## HITS:1 COG:no KEGG:MPTP_1482 NR:ns ## KEGG: MPTP_1482 # Name: not_defined # Def: phage tail protein # Organism: M.plutonius # Pathway: not_defined # 10 171 5 166 171 179 56.0 4e-44 MANEAKVAAKGIDIILLFRLLKKSKEEAAWKLAFQTEHENTKTKDSDSVATKDGPIRIPG SLEIDFSATSILSVGDPYVDQLEEALDNDDIIEIWEINKAEKGTGDNVDKYKATYYQGYV TSFGKSPNAEDTVEVSLEFGINGKGAKGFATLTADQEEVVQYVFKDTTIEKDDPEKVDSP SVESVTPTFDGASTELS >gi|307679271|gb|GL456456.1| GENE 36 19514 - 19972 620 152 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307292403|ref|ZP_07572259.1| ## NR: gi|307292403|ref|ZP_07572259.1| hypothetical protein HMPREF9509_02696 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9509_02696 [Enterococcus faecalis TX0411] # 1 152 1 152 152 216 100.0 3e-55 MVDTFKIYKGQTEVVSGTSPLTITGMEPNTSVSAGEYQVTRVVNGKESERVDIPAFKTLS IAVTGLDFSPKTSTADAGTAGSRQITATVLPENATTKKVTYDISPVTEGLAVSEIGNITW TESVPAGVYTTTGTTEDGKKTAQHTLTLNNQA >gi|307679271|gb|GL456456.1| GENE 37 20027 - 20377 385 116 aa, chain + ## HITS:1 COG:no KEGG:SPy_0992 NR:ns ## KEGG: SPy_0992 # Name: not_defined # Def: hypothetical protein # Organism: S.pyogenes # Pathway: not_defined # 1 116 1 116 117 100 43.0 2e-20 MQIEIKGKKYNCIFGVKFIRELDKQHGVVRNDVNLGMGLTTLLPQLVSGNIVVLSDVLYT ATITEKSRPSKDEVDEFVETVDDIEALFDETLKYLEESNAGKLTVRNFKKALMENK >gi|307679271|gb|GL456456.1| GENE 38 20476 - 20727 118 83 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282598753|ref|YP_003358808.1| ## NR: gi|282598753|ref|YP_003358808.1| hypothetical protein PHIEF11_0018 [Enterococcus phage phiEf11] hypothetical protein HMPREF9509_02698 [Enterococcus faecalis TX0411] putative phage protein [Enterococcus phage phiEf11] hypothetical protein HMPREF9509_02698 [Enterococcus faecalis TX0411] conserved hypothetical protein [Enterococcus faecalis TX2141] conserved hypothetical protein [Enterococcus faecalis TX0312] # 1 83 3 85 85 135 98.0 9e-31 MYEYEVRLLAFQLKRLDHERDLYLQAWLNNQIKATKGKKSEPYFKEFNKFFNYEEQEKLI LGKSLIDEKIDIGAIDLLRKANK >gi|307679271|gb|GL456456.1| GENE 39 20743 - 24150 2976 1135 aa, chain + ## HITS:1 COG:no KEGG:M28_Spy1236 NR:ns ## KEGG: M28_Spy1236 # Name: not_defined # Def: phage protein # Organism: S.pyogenes_MGAS6180 # Pathway: not_defined # 33 1107 23 1064 1093 607 39.0 1e-171 MESYSVEAILTATDRTFSSTMSSAERSMAGVNKQSGELGDGLDKSTTKGNQLGKSILSIG AGVGAVKLVSTAVNMVKDSVEGAINRFDTLNKYPVVMKALGYSTEDVDRSMNKLSDGIDG LPTSLDEIVASTQQLSISTGSLSKGTDTAIALNDAFLASGASTADATRGMQQYIQMLGKG EVDMQSWRTLQETMPIAMDKVAKSFKEQGVNSVNQLYDALKEGDITFNEFNNRLIELDKG VGGFADLAKKNSKGIKTSWANIKTATVKGVTTVIKSFDELSKAVTGKNIAENLDSLKNVV NITFKAIDAAIQSTIPLMKLFGKAITSIGTALTPLLPTIASFAATFTALKVIQQVTGYIK QSELAIKAYTTAISLYNGISKLATLSTTALGRAWMLNLAADKANSAAIAIKTGLLVAQNT IVGVLTGTISLATVATTVFSTAMKLLLGPIGWVTAAIGGLVAVGVNLWKWLNKETESTKA VKKEQESLMKTTDDLIKKNQEHAQSRKDEAIELDNTKEKFQSMISEMEMLSAKEKLSNSE KKRMVEIVEELNGKMTGLNLVYDDQKNILSEMPGTIQQQVDAYNALDEASQAQENINQML KERNDNEAKLMEINAAREKWNQTLKESGGNTKEARENIEKLGEQEQVLKGVQQELTNEII NTANAHEQSMQRASQAVENGVLNQTVSYNALSGKTKETMDAMRSEYSSLEEKVGSAFDVI EQKQAVSVDQMAANLQKNQEAVAQWGQNISTLAERHVDQGLLEQLRKMGPEGAAQAAELV NASDEQLQRLNDVYRNTGETSMNAMKEGYQLGKNGLNEEIQALIPTQKETLMTQIKNTDF NSVGLSVTDDFKAGIENGRTAVEEMTKGIVPKVGEDMKGEVQKADFRGIGKSIPQGLEKG VDDGKGVPVKTSNQMIDDIVSGARKGLDSHSPSRVFHSIGEDVDSGLSNGIEQNAMNPVR AVEAIVDKIISAMDKLPSEMNSIGANAIDGLTNGINANANSALAAARGVADQIVSTMKSA MDIHSPSRVMRDEVGKMIPAGVAVGIDKYSNFVEKSMQRLSKKVAMPALDNLNSNLSFSG GSQSLAFAGDVSSKFTVEVPVIFDSSEVARVIAKPMSKELQNQQDKKNVSLGRRR >gi|307679271|gb|GL456456.1| GENE 40 24151 - 25080 776 309 aa, chain + ## HITS:1 COG:no KEGG:EF1289 NR:ns ## KEGG: EF1289 # Name: not_defined # Def: tail protein, putative # Organism: E.faecalis # Pathway: not_defined # 2 309 1 308 308 509 78.0 1e-143 MLYNFIDVNEQQTKASLPSEAMNFNGSFLEDLVPGYRTLSVVGRELAPTEIQSYQLGIRD GMRHVYARIPERELTVKFKVEANSNEAFRDSFNRLNVALFTEKDVQIWFNDEPEMLWSGS KSDIDAVPEGLNRVVGTFTILLNNPYKYTRSDATSVMWGSPTITFQANYLMGNTGSGAVD LPIVIEGGAYWGSTMITFQNRSYLMGDNGQEVKPIEIYPTVEGLKVKPIITIEGTGRGVW IKTRSDTIDIGDFDKSEIVIDTEQFNITKNGKPMIRPMNDFYIYPNEPLYIQAKDSTFNL TIRYPNRFL >gi|307679271|gb|GL456456.1| GENE 41 25097 - 27112 1424 671 aa, chain + ## HITS:1 COG:no KEGG:EF1290 NR:ns ## KEGG: EF1290 # Name: not_defined # Def: structural protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 404 1 404 485 620 68.0 1e-176 MLMAMDLKREYTAVLDNAYQVSYEKIENQIGNLEFSMPLDDPKNEFLQEMLWVELTDNEN EYIGLYRVMPSTVRKDASNNSITYTANEALCTLLDTVLFGYHELVNRKTVDVINYLLNKQ RTKHWVLKKCEFTRYFSYAWENENGLADALFSIPQAFDEDYMWQWNTKVYPFELSLVKPP KEPIARIQEGYNMQGFEIERDPNNLVNRVYPLGAGEGVNQINIKSVNKNIPYVEDAKSIK EHGLVEYVWVDQRFTVPQALKDNAINMLKKWAQPKISWDVTAADLLKLTDEPLSIDKLRQ GTVIMINTDDFGSINLRIKKETKQDVFGAPQDIQLELGNLSDDFTTTMSDLKRKQEINET YSQGATNILNYSYQDNCEKAYPAEIEFFLDDDVFHVNTVELTFKTKRYRGYTKAVKGGGA TVKSTSAGGASTQTSSAGGGSVVSSSAGGGGSTTSGSGGGSYQGGSTNTDGGSAQTSSAN GSHDHLMFNVIQGPPQTLPKITLRAGGGGEIYTEARGGTFRTASAADNHTHTVNVPSHSH RFNIDIPAHSHVVSIPNHTHSISVPSHSHQVRIPAHTHQITLPDHSHPLEWGIYEAPSSA TSVDIVVDGTTIPVHDTSQQRLNIVNYLRKTSGGKISRGNHTIKIIPNKLARIEAQVICR VFIQSQLGGQF >gi|307679271|gb|GL456456.1| GENE 42 27113 - 27286 290 57 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256961421|ref|ZP_05565592.1| ## NR: gi|256961421|ref|ZP_05565592.1| predicted protein [Enterococcus faecalis Merz96] predicted protein [Enterococcus faecalis E1Sol] hypothetical protein PHIEF11_0022 [Enterococcus phage phiEf11] conserved hypothetical protein [Enterococcus faecalis R712] conserved hypothetical protein [Enterococcus faecalis S613] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_02702 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9510_01212 [Enterococcus faecalis TX0470] hypothetical protein HMPREF9492_00579 [Enterococcus faecalis DAPTO 512] hypothetical protein HMPREF9493_00667 [Enterococcus faecalis DAPTO 516] predicted protein [Enterococcus faecalis Merz96] predicted protein [Enterococcus faecalis E1Sol] hypothetical protein PHIEF11_0022 [Enterococcus phage phiEf11] conserved hypothetical protein [Enterococcus faecalis R712] conserved hypothetical protein [Enterococcus faecalis S613] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_02702 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9492_00579 [Enterococcus faecalis DAPTO 512] hypothetical protein HMPREF9493_00667 [Enterococcus faecalis DAPTO 516] hypothetical protein HMPREF9510_01212 [Enterococcus faecalis TX0470] hypothetical protein HMPREF9495_00125 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9503_00186 [Enterococcus faecalis TX0043] hypothetical protein HMPREF9519_01228 [Enterococcus faecalis TX1346] # 1 57 1 57 57 97 100.0 3e-19 MRLTVKLISKQEEFIINDESGKTLDDYFAELIDNSSPFIKIGNRILQKATIEYINAE >gi|307679271|gb|GL456456.1| GENE 43 27297 - 29060 1674 587 aa, chain + ## HITS:1 COG:no KEGG:EF1291 NR:ns ## KEGG: EF1291 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 468 1 468 589 569 66.0 1e-160 MAIEQIKETDTLNQGRIKINAILDQSNTAVEKINDYQSQLTEGINDAKKIADDAGKEAVQ IAEQAGNQANETANQALTNSQTAINTSNQAVSTANNNKQEFDALRNDFEKLVGEAGDSNP EIVQARTDTQGVTQSTLATRLQVDFNDRMTKSEGVSLLSGTTNVKIPMDFTGKTAGNTAT NANQYFTDVTAKVLKKPKDTWNEISQSDYNKLVSRDDSGVSSGSTQNGVIPQQLGVFNAL EAAKKLIPQNFEGLSQEEAVVLLKDSFVAFTISERVKATSPNNKTIKVSTYIESTDSWTT QIQENAGEYKDLSVQVTDKNFITSDGLIYLISYTDPSNGVTTANLDVDYSAIQLEISINA QDVLAKSGFVREEQLKEHTESQDNPHKVTASQVGLGNVKNYGFATDSEASAGTSTTKYMS PKNVADAIKGQAVTQTGDQEIAGTKDFMNPPKIAGQTVISEKVIAFSAPNTVSVSGTGVK VIPISQKVITNNEFFELSANKIKVLKDGIISVVTSYTTNVPAGWCNIELTKNNAVMNRSN QGTGGLHAAGLTDVFDVKAGDTIAFQSNSNQSSYTVLYLRGFLRYLT >gi|307679271|gb|GL456456.1| GENE 44 29140 - 29361 206 73 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256961423|ref|ZP_05565594.1| ## NR: gi|256961423|ref|ZP_05565594.1| predicted protein [Enterococcus faecalis Merz96] conserved hypothetical protein [Enterococcus faecalis R712] conserved hypothetical protein [Enterococcus faecalis S613] conserved hypothetical protein [Enterococcus faecalis DAPTO 512] conserved hypothetical protein [Enterococcus faecalis DAPTO 516] predicted protein [Enterococcus faecalis Merz96] conserved hypothetical protein [Enterococcus faecalis R712] conserved hypothetical protein [Enterococcus faecalis S613] conserved hypothetical protein [Enterococcus faecalis DAPTO 512] conserved hypothetical protein [Enterococcus faecalis DAPTO 516] # 1 73 1 73 73 120 100.0 4e-26 MSNEIVVAVIGLVGSTFGAFIGVVASANLTAYRIEQLEKKVEKHNGVIERTFKLEGRMQE AEHDIIELKGAKK >gi|307679271|gb|GL456456.1| GENE 45 29358 - 29561 250 67 aa, chain + ## HITS:1 COG:no KEGG:EF2803 NR:ns ## KEGG: EF2803 # Name: not_defined # Def: holin # Organism: E.faecalis # Pathway: not_defined # 1 67 1 67 68 111 95.0 7e-24 MILPDKYYKIIKWGVLTVLPAISVLVATLGKGYGWQQTDMAVLTINAIATFLGVVTGVSA YNLKDKE >gi|307679271|gb|GL456456.1| GENE 46 29566 - 30825 1384 419 aa, chain + ## HITS:1 COG:SPy1006 KEGG:ns NR:ns ## COG: SPy1006 COG3757 # Protein_GI_number: 15675010 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Streptococcus pyogenes M1 GAS # 91 240 214 360 444 142 48.0 1e-33 MKKKILVGALIALFFMPLNVFAAKGDQGVDWAVYQGEQGRFGYAHDKFAIAQIGGYNASG IYEQYTYKTQVASAIAQGKRAHTYIWYDTWGNMDIAKTTMDYFLLRIQTPKNSIVALDFE HGASSDVNANTETILYGMRRIKQAGYTPMYYSYKPFTLQYVDYQRIIKEFPNSLWIAAYP SYEVTPEPLYAYFPSMEGIGIWQFTSTYIAGGLDGNVDLTGITDSGYTDNNKPETDTPAT DAGEEIEKTPNSDVKVGDTVKVKFNVDAWATGEAIPDWVKGNNYKVQEVTGSRVLLEGIL SWISKGDIELLPDATIVPDKQPESIHVVQYGETLSSIAYQYGTDYQTLASLNGLANPNLI YPGQTLKVNRSVVSNVYTVQYGDNLSSIASKLGTTYQALAQRNRLTNLNLIYPGQTLIY >gi|307679271|gb|GL456456.1| GENE 47 30838 - 31218 379 126 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315172153|gb|EFU16170.1| ## NR: gi|315172153|gb|EFU16170.1| hypothetical protein HMPREF9519_02873 [Enterococcus faecalis TX1346] # 3 126 11 134 134 210 100.0 3e-53 MKSEIKKHIRQLLCDYKKIEKQLKKYEDALVYPQSSFSLYFEEKSNEKISLNQIVFHKFF LNTVEEVLSDATSDVRDIFISKYKNGYPRKKNEIVAYETYLSLSTIKRRDSEFLEELARQ LGWLEV >gi|307679271|gb|GL456456.1| GENE 48 31307 - 32572 1139 421 aa, chain + ## HITS:1 COG:TP0155 KEGG:ns NR:ns ## COG: TP0155 COG0739 # Protein_GI_number: 15639148 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Treponema pallidum # 2 137 237 367 371 87 37.0 4e-17 MADTWLSPLAVSYQATQEWDEPDYLSGGQAGIHGGIDLAPKAGTNPPVYSAKSGTVEEVV PNHPIGGNYIVIRHMDNYWTYYGHLATINVSVGQQVTNQTVLGLCGATGGATGIHLHFEV WRGGKWQRINPREVINLDGSGRDSSNNGGNGGIYTGGALLNAGKSISESNIRLIISAGKK YNIKPSFMIAQMFIESHWGDPSISIVGSKDNNWAGISEPFSVPADLGINMSRGSARPVGE GGYYIHFATMNDFFKAYAFVLSKRNGLYNVEGANSIEEYCKGLFRIGGANSDYAATGYQN YFNMLIPTYNSINKQNPGKLAQIDASTEEITNNGGLTTMQCLYERPINPNTGALDINGSA TTMMFCNGVNTRRVYHNDEVNIVKELYRKNNGKEIPVYYKKDWPKTSPWYIRLEAMFPVV K >gi|307679271|gb|GL456456.1| GENE 49 32636 - 34138 831 500 aa, chain - ## HITS:1 COG:no KEGG:BBPR_0060 NR:ns ## KEGG: BBPR_0060 # Name: not_defined # Def: hypothetical protein # Organism: B.bifidum_PRL2010 # Pathway: not_defined # 4 498 33 539 539 119 23.0 2e-25 MKYFFKENKGLAIYSFLMVFATYGIKLFNNTYAIDTMHLMTNYRGYLKHWVSIGRPGLVA LKLLTYNYVNVYFLNLLAIIFFAIATILLCYYVDLSTKQIYNKKYLYVIPSIFPTSQLFS EQFYFVLQNFEFSLGICLVILSLIAIYHIPNKIFKLFGFLLLTFTLTMYQSFFVFACTLI LFKILMALYFAQLNDLKISFKDYAFKIGHFILLAISSLVLSQLMAMLAKKVLNVESSYLD NMILWGKRPLIDSINDIKDYAKELFFPPVGDTFFTPLFLICVLLLVIVLINMSYLKRKNV FFIFITLLGILITPLMFTVLGGKRPAIRGEVPNFPAVLALLLIFIMIYWGYNFVLKHLLV GIVIIFTFIQVRETTNLEYSEYLTAEEDLRTAEMITNNIYSMEIENPESYKLLMYGNRSP RNVSNIKGETNGVSLFEFMPNSVHTSLNTLVYTKTFGLNFNDPTPEDFEKHKALQAEMNV WPSKDSIRVVDDCIIVNLSK >gi|307679271|gb|GL456456.1| GENE 50 34495 - 35076 333 193 aa, chain - ## HITS:1 COG:no KEGG:EF2795 NR:ns ## KEGG: EF2795 # Name: not_defined # Def: LysM domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 22 181 124 285 354 92 38.0 1e-17 MKKSLSLVFALLLLTACTNENTKTENTKGSSTTVTSTVKESSNNSINEKNILSTNTTTTS TADRKSSQTEEEQSHTEDPASLSSFVGGWGIPQSGNFFFINPDGKMSGSGQPNGVIQSPN FLSNADGSITMNFIINNTSLSFTKNLDGTLSTENQIYSYLGNITLEQWLELKNKGQMSSE QQTGILEASSQTP >gi|307679271|gb|GL456456.1| GENE 51 35447 - 35827 489 126 aa, chain - ## HITS:1 COG:no KEGG:EF2205 NR:ns ## KEGG: EF2205 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 126 1 126 126 231 99.0 5e-60 MGLFDGLLGNATQNNNETAEKELRDVLIPNEKVDMAFTLVRDLIVFTDKRLILVDKQGIT GKKVDYKSIPYKSISRFSVETSGHFDLDAELKIWISSAELPSVSLQFRKDKDIVAIQQAL AAAVLS >gi|307679271|gb|GL456456.1| GENE 52 36086 - 37324 1613 412 aa, chain - ## HITS:1 COG:SP0278 KEGG:ns NR:ns ## COG: SP0278 COG2309 # Protein_GI_number: 15900212 # Func_class: E Amino acid transport and metabolism # Function: Leucyl aminopeptidase (aminopeptidase T) # Organism: Streptococcus pneumoniae TIGR4 # 1 412 1 412 413 515 62.0 1e-146 MTLENFNENLKKYARLIAETGVNVQDNHTVVLQISVDQAPLARLITEEAYRLGAAEVIVQ WSDETIQREFLAHAATDRIENVPQYKIDQTDDWIAKGASRISVVSSNPDALAGVDAQRVA AFQAANGKALVNLRKATQANKVSWTVVAAASEGWAAKVFPELATSEEQVDALWNEIFKTT RIYEENPVIAWDIHDKKLQEKAAELNEQQFTALHYTAPGTDLTIGLPKNHLWEGAGSYNA RGEEFMANMPTEEVFTAPDSRRVDGYVSSTKPLSYAGTIISGMKFTFKDGKVVDFSAEQG EEALKNLLAIDEGAKHLGEVALVPDPSPISQSGLIFYNTLFDENASNHLAFGSAYAFNLQ GGTEMSEEELAEAGLNRSQTHVDFMVGSDKMNIDGIKEDGTIVPVFRNGDWA >gi|307679271|gb|GL456456.1| GENE 53 37575 - 38147 635 190 aa, chain + ## HITS:1 COG:FN1004 KEGG:ns NR:ns ## COG: FN1004 COG1309 # Protein_GI_number: 19704339 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Fusobacterium nucleatum # 1 175 1 174 188 69 27.0 3e-12 MARKKTITKEQILTAAYEVVATEGFSKFTARNIANKMKCSTQPIYLEFKNMDDLRDALFQ KIHKYLAKEVFPVKHTGNTIVDLALNYIHFATSESKLYRALYLEEYGGGKKMQEFSYHYF TEAVKADPEYANLNDVQIDSLHMGTWVVATGVAALMTSGIIHPSEEQIIHLMKDSIEAIL ERDEPIDIDL >gi|307679271|gb|GL456456.1| GENE 54 38305 - 38778 437 157 aa, chain + ## HITS:1 COG:CAC0262 KEGG:ns NR:ns ## COG: CAC0262 COG3476 # Protein_GI_number: 15893554 # Func_class: T Signal transduction mechanisms # Function: Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) # Organism: Clostridium acetobutylicum # 3 157 10 165 170 82 35.0 4e-16 MNRVKDKRLWLSIVGITGLGLLSGLFSVNAREYYQALRLPSFAPPGWLFGPVWLVLYIFM GITFYFILVHPNKQQKKRMITLFILQFIANFFWTFFFFSLQNNLLSVIDISLLWLLLIVQ QWDYLRYKLITRGWLMIPYILWVTFAAALNYSILFLN >gi|307679271|gb|GL456456.1| GENE 55 38852 - 39295 735 147 aa, chain - ## HITS:1 COG:SPy0721 KEGG:ns NR:ns ## COG: SPy0721 COG0716 # Protein_GI_number: 15674777 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Streptococcus pyogenes M1 GAS # 1 145 1 145 149 173 73.0 1e-43 MTLAKIVYASMTGNTEEIADIVAEAFEDLELEVEIDECTQVDAADFEEADICVVATYTYG DGDLPDEIVDFYEDLQEIDLSGKIFGVCGSGDTFYDDFCKSVDDFEAVFTQIGAKKGADS VKVDLAAEEDDIQRLEEFAKKLATAAE >gi|307679271|gb|GL456456.1| GENE 56 39470 - 40234 888 254 aa, chain + ## HITS:1 COG:lin1821 KEGG:ns NR:ns ## COG: lin1821 COG0024 # Protein_GI_number: 16800888 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Listeria innocua # 1 250 1 250 252 361 67.0 1e-100 MITLKSPREIEMMDESGELLADVHRHLRTFIKPGITSWDIEVFVRDFIESHGGVAAQIGY EGYKYATCCSINDEICHGFPRKKVLKDGDLIKVDMCVDLKGAISDSCWSYVVGESTPEID RLMEVTKKALYLGIEQAQVGNRIGDIGHAIQTYVEGEGYGVVRDFVGHGIGPTIHESPII PHYGEAGKGLRLKEGMVITIEPMVNTGTWRMKMDPNGWTAYTEDGGLSCQYEHSLAITKE GPRILTSQGEELTY >gi|307679271|gb|GL456456.1| GENE 57 40250 - 41158 931 302 aa, chain + ## HITS:1 COG:lin1818 KEGG:ns NR:ns ## COG: lin1818 COG1295 # Protein_GI_number: 16800885 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 9 275 10 276 289 176 35.0 6e-44 MKFLDNIKKNQSLMRFIETTQSHMVTAEIGNSSVVVAYYLLLSLFPLLIAVGNVLPYLRI DPNSVLPYIAEAIPKDVYKNLEPAIRSLLTQRSGGLLSVSALAAFWSASQSINALQNAMN KAFGVEQRKNFILVRVVSFLVILLFMVAIVGVVVILGLGQYIIELLQPIFHYSTSVIDTF QALKWPLTTVVLLVIMCLIYAVVPNRKLSLRSILPGAIFSTVGWMLLSQIFGLYVKYFSS RIASYQIIGSFIILMLWLNFAATIIILGAIVNAVVDEYLSGDKEKKQPSFEQRLFRWFKK KK >gi|307679271|gb|GL456456.1| GENE 58 41269 - 42405 868 378 aa, chain + ## HITS:1 COG:L35751 KEGG:ns NR:ns ## COG: L35751 COG0472 # Protein_GI_number: 15673776 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Lactococcus lactis # 4 365 10 397 443 379 53.0 1e-105 MSLFIYEVLIRLFMTFILSLLLTPLVKLLAFRIGAYDAPGERRINTKNMPTAGGLAIYIA FASSCLLIFRSIIPQDYIWPIILAGGMVVLTGLIDDIKEITPMKKTIGILLAALVIYFVA GIRIDFVTLPVVGMIDLRWFSLPLTLLWILAITNAVNLIDGLDGLASGVSIIGLTTIGIT GYFFLHAKTVYIPIVIFILVASIAGFFPYNFYPAKIFLGDTGALFLGFMIAVMSLQGLKN ATFITVITPMVILGVPITDTVYAIIRRLLNKKPISSADKMHLHHRLLSLGFTHKGAVMTI YALALVFSFVSLLFSYSSTVASILLIVFCLIGLELFIELIGLVGEGHQPLMYLLRILGNR EYRQEQMKKRLGKHSKRK >gi|307679271|gb|GL456456.1| GENE 59 42533 - 43315 761 260 aa, chain + ## HITS:1 COG:RSc0688 KEGG:ns NR:ns ## COG: RSc0688 COG1216 # Protein_GI_number: 17545407 # Func_class: R General function prediction only # Function: Predicted glycosyltransferases # Organism: Ralstonia solanacearum # 5 257 4 251 275 109 29.0 5e-24 MQEMVTISIVTYNSRYIFNVLDQLKAELGTDSIYDIHIYDNHSETAYLEKLTTYEPFITI HRAEENQGFGHGHNQVLFNASTKYAIIFNPDVLVTKDVLDRLLDRIKIDKNIAVVSPKVL NEDGTTQYLVRQKLDVFDYMLRFIPFQFVKKIFDKRLSIYECRDLSDTETTDIKMGSGCF MLIDREKFVEIGGFDERFFMYFEDNDLCLRFGKAGYRILYTPFETVVHMYEKGAHKSRKL FKIFMQSMGKFFNKWGWRFF >gi|307679271|gb|GL456456.1| GENE 60 43315 - 44142 705 275 aa, chain + ## HITS:1 COG:no KEGG:EF2196 NR:ns ## KEGG: EF2196 # Name: not_defined # Def: glycosyl transferase, group 2 family protein # Organism: E.faecalis # Pathway: not_defined # 1 275 1 275 275 526 97.0 1e-148 MSQRLAVVIVLYQMKMADAPNYLLLKEVVNHPELHLFIYDNSPLPQEDALFLQQNVTYRH NPDNPGLATAYNEAIAFSQANQCELLLLLDQDTEVPASYFDTLIIMPLDPTVAVYVPIVD ANGQQISPVYSDQYVGLKGAKPTAGIANQPLMAINSGTVITAETLRWLEEFSEEFPLDYL DHWFFYQLNQANKKIEVLPIHLKQELSVLDYRTMSPQRYRSIIEAETLFYRRYDQEKFSH HRRHLFLRSSKQFLTVKNRQIWRQTLAEFLKLMKG >gi|307679271|gb|GL456456.1| GENE 61 44146 - 44859 738 237 aa, chain + ## HITS:1 COG:DRA0037 KEGG:ns NR:ns ## COG: DRA0037 COG0463 # Protein_GI_number: 15807707 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Deinococcus radiodurans # 4 206 10 222 328 114 30.0 2e-25 MISVCIATYNGEKYLAEQLDSILLQVSEEDELIISDDGSTDHTLEILRTYAANYPQIQLL QGPGQGVIANFAFALTHTKGEVIFLADQDDVWLPNKVTTVTEYFETHPDIQVVISDLKIV DADLQVTNPSYFKFRKIKSGFWRNAIKSGYIGAGMAFRQEMKNVILPIPPEVPMHDMWIG LLAARKKQTGFIKEPLVLYRRHGANVSPIITKTSFQQKLNWRVNLLKALHQRLKEQR >gi|307679271|gb|GL456456.1| GENE 62 44981 - 45847 1072 288 aa, chain + ## HITS:1 COG:L197041 KEGG:ns NR:ns ## COG: L197041 COG1209 # Protein_GI_number: 15672176 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-glucose pyrophosphorylase # Organism: Lactococcus lactis # 1 285 1 285 289 461 79.0 1e-130 MKGIILAGGSGTRLYPLTKATSKQLMPIYDKPMIYYPMSTLMLAGINEILIISTPEDTPR FESLFGDGHDLGIHIEYAVQESPDGLAQAFIIGEEFIGDDSVCLVLGDNIYYGGGLSKML QRAASKESGATVFGYHVNDPERFGVVEFDEEMRALSIEEKPAQPKSNYAVTGLYFYDNEV VEIAKGIKPSERGELEITDVNKVYLEKNKLSVEVMGRGFAWLDTGTHESLLEASTFIETI EKRQNLKVACLEEIAYRMGYITKEQLVELAQPLKKNGYGQYLLRLAAE >gi|307679271|gb|GL456456.1| GENE 63 45860 - 46432 809 190 aa, chain + ## HITS:1 COG:CAC2331 KEGG:ns NR:ns ## COG: CAC2331 COG1898 # Protein_GI_number: 15895598 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes # Organism: Clostridium acetobutylicum # 6 178 9 180 185 186 55.0 3e-47 MKVIDTKLQDVKIIEMDVFGDHRGFFTESYSKAKFAEHGLDFDFVQDNHSLSTEAGVLRG LHFQKGEAAQTKLIRVVTGAVLDVIVDIRKGSPTYGQWEGYILSEHNHRQLLVPKGFAHG FVTLTPNVNFMYKCDNYYNAAADGGIAFNDPALAIDWPIAPEKAITSEKDQKHPTLKEFE AENPFIYGEI >gi|307679271|gb|GL456456.1| GENE 64 46457 - 47485 1208 342 aa, chain + ## HITS:1 COG:SPy0936 KEGG:ns NR:ns ## COG: SPy0936 COG1088 # Protein_GI_number: 15674955 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-D-glucose 4,6-dehydratase # Organism: Streptococcus pyogenes M1 GAS # 2 342 3 343 346 582 81.0 1e-166 MKKIIVTGGAGFIGSNFVHYVVKNHPEVHVTVLDKLTYAGNEKNLEGLPSDRVELVVGDI ADAELVNRLVAETDAVVHYAAESHNDNSLNDPFPFVQTNLIGTYTLIEACRKNNVRYHHV STDEVYGDLPLREDLPGHGEGEGEKFTAETPYNPSSPYSSTKAGSDLLVKAWVRSFNLQA TISNCSNNYGPYQHIEKFIPRQITNVLSGITPKLYGAGKNVRDWIHTNDHSSAVWAILTK GQIGETYLIGADGEEDNKTVMELILELMGQPVDAYEHVNDRAGHDLRYAIDSTRLREELG WEPEFTNFREGLAETIKWYTENEDWWRADKEAVEAKYAQNGQ >gi|307679271|gb|GL456456.1| GENE 65 47578 - 48420 1109 280 aa, chain + ## HITS:1 COG:L320 KEGG:ns NR:ns ## COG: L320 COG1091 # Protein_GI_number: 15672181 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-4-dehydrorhamnose reductase # Organism: Lactococcus lactis # 1 276 1 281 299 353 64.0 2e-97 MILITGGNGQLGTELRHLLDEQGIEYVSTDSTELDITDADSTLAKVKEIQPSVIYHCAAY TAVDKAEDEGKELDEKVNVDGTRHVAEAAKAVGATLVYVSTDYIFDGTKKEGVYAIDDQP NPLNEYGRTKLLGEQAVQEILDDYYIIRTSWVFGQYGHNFVFTMQKLAETRDQLTVVDDQ FGRPTWTRTLAEFMAFVIAEKAPFGVYHLSNENSCSWYQFAKEILKDTEVEVLPVDSTQF PQKAQRPQYSVMDLSKTEALGFKIPTWQEALAQMLENVQQ >gi|307679271|gb|GL456456.1| GENE 66 48479 - 49204 747 241 aa, chain + ## HITS:1 COG:L11285 KEGG:ns NR:ns ## COG: L11285 COG0463 # Protein_GI_number: 15672191 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Lactococcus lactis # 2 237 5 237 241 250 54.0 2e-66 MKVLLIIPAYNEEENILRTIASIETFKQEVTHFQHELDYVVINDGSTDGTKQILEVNQIN AIHLVLNLGIGGAVQTGYKYALENEYDVAVQFDGDGQHDINSLPILLEPLAEGKCDFSIG SRFIPGNEAAFQSTKMRRFGIRLLSFCIRMASGKTIYDVTSGYRAGNRKVIAFFAKRYPT NYPEPESIVHLIKKRFVIVERPVNMMERLGGVSSIRALASVKYMLEVGSAILIAAFMKEG D >gi|307679271|gb|GL456456.1| GENE 67 49204 - 49569 450 121 aa, chain + ## HITS:1 COG:no KEGG:EF2189 NR:ns ## KEGG: EF2189 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 121 1 121 121 185 99.0 5e-46 MLPTVLWLALFLFAIGFFLYIIRGINKNIFLLKNALIWLLISIVLIIFAIFPHVAEWLAM AFGFETTSNFLLSAAVIVLLIMEIKNSVLISKHENRIKTLLQELSIMKSEEKWENREGKN D >gi|307679271|gb|GL456456.1| GENE 68 49562 - 50599 598 345 aa, chain + ## HITS:1 COG:no KEGG:EF2188 NR:ns ## KEGG: EF2188 # Name: not_defined # Def: racemase domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 233 1 233 234 362 100.0 2e-98 MTKNNDVLDAFKFIAALSVVGIHTFPSKSILGSDLKILARFSVPFFFIVSGYFLFKKISF REKEKDKKILFNYIKRILKVYLSWLIFYIPFFIVSIMNFVKGEMDLRGKISFILSILLGY VPRIGVSWYLIALVMSVFIIYYIRSYFGEKVLLTIGIVSFLIGVFTSTYGKWYFDIEWIK QVPFYGSISFSMISTICYVIIGYFLANYVFEKPLNNLFLVLGIVIFSYVGLKEVKFAQQL GVFYDAQNYFTLPIVAVLVVILSFNLENIRIPGSDFLRKSSIIIYLAQNPIKYLLFYAAS QLGIQKLTYDNFKTYVVQVFLLIVFSYIIIKLSELRQFYWLKNLY >gi|307679271|gb|GL456456.1| GENE 69 50646 - 50987 339 113 aa, chain - ## HITS:1 COG:no KEGG:EF2184 NR:ns ## KEGG: EF2184 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 113 1 113 113 112 100.0 4e-24 MVLFIIYVFLSSAGLVLFKLGSSSLNIQLQQTIFSMNISLISLLGLFCYLISFILWMLII SRSDVSYIVPLGVACTNIAILIASNLILKETITTNALIGAVVIIVGIVIMNLK >gi|307679271|gb|GL456456.1| GENE 70 51235 - 52029 678 264 aa, chain + ## HITS:1 COG:BS_tagG KEGG:ns NR:ns ## COG: BS_tagG COG1682 # Protein_GI_number: 16080624 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate export systems, permease component # Organism: Bacillus subtilis # 18 264 17 275 275 143 33.0 3e-34 MFKETFSIFKNIFQNKKLLLQFSFNDFKAKYAGSALGIVWAFLTPLVTVLTYWFVFSVGL RSRAGDNMPFIVYLVTGMVPWFFFSDSLLSATNVFREYSYLVKKVVFNVQILPTSKILSN LYTHLFFILIGFVITTANGYYPSLYSLQLIYYLACLLVFLTAITWITASTQPFLPDIMQF INIIMQTVMWTLPILWQPTGMIATILKINPLYYIVQGYRESYLGGAWFWEHWQYSLYFWG VTIVLLLIGSTVFRRLKPHFSDVL >gi|307679271|gb|GL456456.1| GENE 71 52042 - 53259 1371 405 aa, chain + ## HITS:1 COG:PA1386 KEGG:ns NR:ns ## COG: PA1386 COG1134 # Protein_GI_number: 15596583 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate transport system, ATPase component # Organism: Pseudomonas aeruginosa # 11 238 13 240 422 242 49.0 1e-63 MSEYAIDIQHITKTYNMYKKPSDRFKEALSPTKKSYHDLFYALDDVTMQIKKGEMIGFVG ENGSGKSTMLKIITGVLTPTSGSMVINGKISALLELGSGFNPEYSGYENIFLNGMVLGFS REEMEERVQDVIDFADIGDHLYQPVKTYSSGMFVRLAFAVAINVDPDILIVDEALAVGDL EFQLKCMEKFTEIKNSGKTILFVSHDVNSIRRFCDRTFWLQHGKVVEYGDTMDVTTNYEN FLKKKSIKTVDREATMKDETPTPDIIEVDHAELLNADYEPLEMVTQDEKVIVKIEYTVKN DQIKKPVCGVAIRTVDNHYVCGLNTLLDGVQIPWKKGRNVFYLEYEKMSLLTGEYYFDIA FFEEHATVPLVYKTKYVTMFITGRYAGEGIVILDHKWKDTTKDEV >gi|307679271|gb|GL456456.1| GENE 72 53249 - 56392 3278 1047 aa, chain + ## HITS:1 COG:alr4487_2 KEGG:ns NR:ns ## COG: alr4487_2 COG0463 # Protein_GI_number: 17231979 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Nostoc sp. PCC 7120 # 554 791 1 239 519 183 38.0 2e-45 MKYDFEMETDESTSVGKIVAQIKENSDVLEFGPGNGRMTSYLMEEKKCRVSIVELDKELY DHVSQFSTDAFYGNIDENDWVEYFAGKTFDYIVFADVLEHLMNPQSALAKVKPFLKPGGQ ILITFPNLAHNSVLIDLFNNRLTWNETGLLDATHKSFYLQEGFEKVFAEVGLYIAKEDFT FNQVGYNEIPTTYEALPVEVQAAFKARPFGEVYQYFFALTAEPVEQPERVTPVNSYNEKN VHILINCGEEKETELDQPVDLQNPETKRFQLKIPEDVQLIKLFPSLTGAIVKLSMTIDGE TVPVAATNAFLVQEDIYYFLDTQVPVIEVTDAQMAGKDLTVDIDYFFEGNYSERENTFIH ALLDERNQFLEEMNKQTETAPMPTGKYKRITLTKFDKMINLTIDDIARDVENNVSVIRGW AYDKQTNYPLRFSIAEASESVTYTVETEYRRDVIDMFELEGDQDYGFVITIKDPEDLPAY TLNIDTKSGQKVQYVVERPNMVQPGTKFDRAWRSIQTRGLMGSVKWYFKRQEKAEAPVDV EAVLAEIKTFQFQPKISVAVPVYNVEEKWLAACVSSLQNQYYENWELCLADDASPSEHIK PMLEKYKELDQRIKVIYREENGHISEATNSALSIATGDFVGFMDNDDELAPQALYEVVKA LNTDPTIDFLYTDEDKITENGRRFNAFYKSDWNPELILNHNYITHFVVVKRDLLEKVGGL NSAYNGAQDYDFVLRATEQATKIKHIPGMMYHWRAIESSTALNPESKGYAYVAGQKAVQA ATERRGLKAQVEIAEFYGSYKINYLYDHVPMVSLIITNDTENMSSYLRQLLEKTAYTNYE ILLPERFENQINIQNDRLRYVSTETRHGMIQAAKGEYVALLNAGLVPTKNDWLKELMNIG QQETSGLVTGRVVDARYRVETVGVSVDTDKGRLLYPEKGTPGKSLGYYYRIALPRNIQAA TEDCLLFNKQLYLNLEGINENLGKEWMGVDLSLQFASAGKRNVYVSYAILKADEKMQNHD KKGSYKELAEKWTAEALVDPYRNPKHL >gi|307679271|gb|GL456456.1| GENE 73 56404 - 58545 2256 713 aa, chain + ## HITS:1 COG:alr4487_2 KEGG:ns NR:ns ## COG: alr4487_2 COG0463 # Protein_GI_number: 17231979 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Nostoc sp. PCC 7120 # 180 573 1 392 519 213 33.0 8e-55 MNEDIKVIFDSIYRDKATNNLTITGWALDTITKESPTFTINNENQVSAYNIQRVLREDVN QIYQTEPAIEAGFVVTLEGIKQKKVLPFHFQSSAHVVTVDFPLNKKYPVIPGTEDKVTRL WIKAKKGFKYMAKNGISHTIQRAKIEKLRNQASYPNWLARNEVLDIEAMTQEIATFHYQP KISIAMPVYNVEEKWLRLCIDSILNQVYTNWELCMADDASTDPNVKKILTEYQQLDERIR VVFREQNGHISEATNSALAIATGEFVALLDNDDELAINAFYEVVKVLNENPELDLIYSDE DKIDMDGNRSDPAFKPDWSPDLLFGTNYISHLGVYRRSILEEIGGFRKGYEGSQDYDLVL RFTEKTTKERITHIPKVLYYWRMLPTSTAVDQGSKGYAFEAGLRAVQDALVRRGINGHAT HGAANGLYDVYYDIESEKLVSIIIPTKNGYKDVQRCVSSIIEKTTYQNYEIIMADNGSTD PKMHELYAEFEQQLPGRFFVESIDIPFNFSTINNRAAKKAHGEYLLFLNNDTEVITENWL TLMVSFAQQERIGCVGAKLLYPNNTVQHAGVILGLGGVAGHGHYGYPHGDLGYFGRLAIN VNYSAVTAACLLMKKADFDAVGGFEEAFTVAFNDVDLCLKVQALGRDNVWLHEAELYHFE SQTRGYDDKGKKKKRFEQEKVMMEEKWGPLIENDPFYNPNLTRDIPNFSLRID >gi|307679271|gb|GL456456.1| GENE 74 58579 - 60549 1686 656 aa, chain + ## HITS:1 COG:no KEGG:EF2179 NR:ns ## KEGG: EF2179 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 656 1 656 656 1248 99.0 0 MEQQLTTRKEKQPLRNQAEQSARLVDHLLRWRYLLAAVIFILLVAFKVHGSSLNMWDAYV SEYADGQKSSLIAGEPRGVRSDEWLVQTPFSLSQTQTGLKTHNDVITLNGQDMVVGYNSP AWNLATLAKPFTWGYVLLGKEYGLSWYWNLKLIGLILFSFEIGLIVTRRNKYLALLASVW IPFSSALQWWFVSPVGDLVFFGLGFLVGIYNYFYYHSSVRRRVICAITAVIMASGFVLVI YPALQVPLGYLILLFLILFFLEFRKKIKLDKWDGVLIGGALLMTAIIVGGSLYGSLDSLK AVMDTVYPGKRVSLGGDMPKRDILLFLTNWKMPFQDVPYSNNSEISSFYQLFFVILPLSP FIFYKKIKENIYGFVLFVYCLFNLVWMSVQFPTIFAKLTLWSYVPEQRAMLSFGFAAVLL SLWFIDYLWNRQAKIPMMAWLGALGLNVVLYFFVLYTGNLRLYVTRMDIIGVLVVATVLI VALFKRWRTLFVLVLLGIIMVSGAFVNPISRGVSAVYGKKLAVEVEEINKKDPNQLWVGE RLMYGYLPMLGVHTFNGVAFTPDLEAWKPLDPKGKDTFIYNRYAHINVEVGNQTPVLELM QKDAIIARLSPEKLKEYGIKYAVVYKPLEPLDTPTIHFEKLYGPDQNGAYIYRIND >gi|307679271|gb|GL456456.1| GENE 75 60578 - 61879 930 433 aa, chain + ## HITS:1 COG:no KEGG:EF2178 NR:ns ## KEGG: EF2178 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 433 1 433 433 810 99.0 0 MGKVLNRIGRLILLVTMIGSYTMWVVGIDAPVTKYMYANSSILLLIAVILVLLLNCTKLK FIDWLTVALALATWLLFHFTESIRHSTMQTDTMIPLIILLVLCFKVCVFDRVDQTLLLIV SLVALSATLYRMSVELPQLIPADEIFKESNKLESIWINTNTIGATLMFSTMMASSLIKAY RNKVFNLLLLPVYIGGVLGTWVSQSKTSFAILVGFILVDNLLPKRFLQRSKVWLFGFVGV AALGPLLFYLCAESDTVDLFTGRERIWHEFFAKWLSDPQHIKVGMEPFVASWKPLGTHNA FLFTLSNFGVIGYLILFGFLVSMILLIGFRKKTLDRLQVSLLLGFLLIWIHSFMEDILLA PHWMPIVYSFLGLAFYFRPEKKRGRHERPTTPKRRKRVKQTSPVSNEERPIAPVDEEGWD QPEELSRVQRHRR >gi|307679271|gb|GL456456.1| GENE 76 61985 - 63382 1206 465 aa, chain + ## HITS:1 COG:CAC2330 KEGG:ns NR:ns ## COG: CAC2330 COG2148 # Protein_GI_number: 15895597 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sugar transferases involved in lipopolysaccharide synthesis # Organism: Clostridium acetobutylicum # 1 450 1 449 461 282 36.0 8e-76 MTSKSEWSNARRIVIILADVLLYNLSIILGFMVKFGREIPSFNFVAYEKSAIYISIFFIF LNLLLGTYIFYNRKISDIIFVTVIGQILMTLTIMIVTFAGRWFTFPRSVLGYSFIIGIIV LSLWRILVYYLYLKVSNERKVVLLGKENQVMRSIQNFMSDKNNKHKVTSVVVSNYYENLK KIIDEIDIVYISSNVDENEKVKLYQLIVKHKKKIFLDTSFENLIMLKPNMMNFEDESIIE VSNFEIQPEENFIKRLFDILVSVCLFVITSPLMLIAAILVKATSPGPVIYKQTRITLDQR EFSILKFRTMSATAEAKSGPVLSTSNDSRVTTVGKYLRALRIDELPQLINVIRGDMSIVG PRPERPFFVDQFNQENPNYYLRHNVRAGITGYAQVYGKYASDYNSKLNFDLLYIKNYSLL LDMKILLQTIKILFDKVSSRGLDESEEREELTMDYCKENAIRIYR >gi|307679271|gb|GL456456.1| GENE 77 63502 - 64335 825 277 aa, chain + ## HITS:1 COG:HI1695 KEGG:ns NR:ns ## COG: HI1695 COG0463 # Protein_GI_number: 16273582 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Haemophilus influenzae # 7 274 4 267 267 204 39.0 1e-52 MEKVPVSVLLSIYIKERPEYVIACLDSIFNQTVKVDEIVLVEDGPVTEEMTVIVDKYKET YPEVLHVLPLEKNVGLGKALAEGVKACRNELIARMDADDIMKMNRIEKQWQLFQKNPNLV IAGSNIIEFDGNIENVLGYRNLPSSNEDIREFSKRRNPFNHMTVMYKKSDILEVGNYLPM SGFEDYYLWVRLLKKGKEAQNLSEHLVYARTGSDMYARRGGWQYFKSGLKGRKAIYQAGL GSFKDFFVSSSAHVIVSLMPNTLRGKFYEKFLRKEND >gi|307679271|gb|GL456456.1| GENE 78 64351 - 65193 468 280 aa, chain + ## HITS:1 COG:SP1367 KEGG:ns NR:ns ## COG: SP1367 COG3475 # Protein_GI_number: 15901221 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: LPS biosynthesis protein # Organism: Streptococcus pneumoniae TIGR4 # 5 279 3 275 281 335 58.0 5e-92 MQEMSQTDLKEIQAVTLTMSKYFVQFCQENNLLCYFCGGGCIGAVRSQGFIPWDDDLDFF MPRPDYEKLKKLWPQKADINRYPILVASKTYNDHNSFITIRDTATTFIKPYQEDLDIPHG LPIDIFPLDGAPEGKLRRKIQKFWALIYALFCSQVVPEKHGGLMAIGSKVLLGIFSSSKI RYHIWCFAEKRMTKYSFGSTPYVTELCVGPRYMGNIYHLEDFKSAIFVPFEDTKMPIPVG YKRYLTQVFGDFMQLPPEEDRQPHHEALIVDTKKSYTEYI >gi|307679271|gb|GL456456.1| GENE 79 65513 - 66587 852 358 aa, chain + ## HITS:1 COG:no KEGG:EF2174 NR:ns ## KEGG: EF2174 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 12 350 8 364 893 196 37.0 2e-48 MKRINKISVITMLMLTALVPSSSIVYAIDASSSESAEEVISTDTAETLNSTSSSGETSTE SSSSTSSSVPSETKNSLDTSDAKDTWQSKDAEETSETTSSSEANKKDEDEIVITEDMNKP MGSGMKGMRRKRAAYAYGDPISITEANRPPKNFIDVSSWNGSLSVANYQTMKSYGIGGVV VKMTEATTYQNPERFAQVQNANAVGIKVSAYHYSHFTTKDQAIKEANYFADTAINTGLPK DTLMVNDAEEGSMNNGQLTANSIAFANQLKARGFTNVLHYSMAAWFTEGVLSPTQLGTEN IWIAQYPFEPTADQLWHKNEGYAAWQWSSLLTIPGVDIGVGVFDINADYTGRFTSSGG Prediction of potential genes in microbial genomes Time: Tue Jul 5 20:36:37 2011 Seq name: gi|307679270|gb|GL456457.1| Enterococcus faecalis TX0411 genomic scaffold Scfld172, whole genome shotgun sequence Length of sequence - 14493 bp Number of predicted genes - 12, with homology - 12 Number of transcription units - 9, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 196 - 241 17.1 1 1 Tu 1 . - CDS 300 - 2945 3241 ## COG0474 Cation transport ATPase - Prom 3183 - 3242 10.4 + Prom 3727 - 3786 7.9 2 2 Tu 1 . + CDS 3825 - 4073 267 ## COG1476 Predicted transcriptional regulators + Term 4145 - 4191 10.5 3 3 Tu 1 . - CDS 4070 - 4222 115 ## gi|315157501|gb|EFU01518.1| hypothetical protein HMPREF9508_02549 - Prom 4242 - 4301 5.7 - Term 4265 - 4306 1.2 4 4 Tu 1 . - CDS 4440 - 5471 1274 ## COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) - Prom 5597 - 5656 7.4 + Prom 5540 - 5599 8.6 5 5 Tu 1 . + CDS 5637 - 6527 990 ## COG0346 Lactoylglutathione lyase and related lyases + Term 6552 - 6602 4.4 + Prom 6970 - 7029 7.4 6 6 Op 1 24/0.000 + CDS 7163 - 8347 1417 ## COG1125 ABC-type proline/glycine betaine transport systems, ATPase components 7 6 Op 2 13/0.000 + CDS 8351 - 8986 912 ## COG1174 ABC-type proline/glycine betaine transport systems, permease component 8 6 Op 3 13/0.000 + CDS 8989 - 9909 1198 ## COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) 9 6 Op 4 . + CDS 9913 - 10575 884 ## COG1174 ABC-type proline/glycine betaine transport systems, permease component + Term 10587 - 10638 6.6 10 7 Tu 1 . + CDS 10647 - 11111 323 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Term 11105 - 11138 1.5 11 8 Tu 1 . - CDS 11146 - 12969 1626 ## COG0531 Amino acid transporters - Prom 13080 - 13139 7.2 - Term 13189 - 13240 7.1 12 9 Tu 1 . - CDS 13267 - 14436 1411 ## COG0053 Predicted Co/Zn/Cd cation transporters Predicted protein(s) >gi|307679270|gb|GL456457.1| GENE 1 300 - 2945 3241 881 aa, chain - ## HITS:1 COG:lin0814 KEGG:ns NR:ns ## COG: lin0814 COG0474 # Protein_GI_number: 16799888 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Listeria innocua # 5 869 5 868 876 878 54.0 0 MEAYKQSVDTVTKEVSVNTETGLTQQEAQQRLKENGRNQFEEAKKDSVLKKFIHSLSDFT TIILLVAAAISFYTAIVTEHGEYFEGILIIAIVIINAVLAIVQEGNAEKSLAALQDMNKQ SSAVLRDGKVIEVDAEELVVGDVLVLEAGSMITADARLIQASQMRVEESALTGESEPVEK DPTYVGHDDDGLGDQINMIFKGCTVVNGRGRAVVTATGMNTEMGKIAGLLNNSDQQKTPL QKRLNQLGKRISLLALGAAAIVFIIGELQGEPLLEMFMTAVSLAVAAVPETLTVIVTLTL AYGVQKMAKKHAIIRRLPAVETLGTANVICSDKTGTLTQNKMRVRRVWHRGDEVTDTEDA MTDEAMEVLKMAALCTDVIVEKEGDELTVTGNPTEAAIVRAVEENYHTKEELEEKYPRIG EIPFDSERKMMTTVHQWGKKYISITKGAFDVLLPRFGFGDVDQAAIVNDRFGKRALRVIA VGYAVYDEPPKEITSEALEKNLRLLGLIGMIDPPRPESKGAIARAKKAGIKTVMITGDHV VTASAIAKELGILKDKSEALSGSELKKMSDEELDKRVKDLSVYARVTPEDKIRIVQSWQR SGAVVAMTGDGVNDAPALKASDVGCAMGITGTDVAQGASDMILTDDNFATIVDAVAQGRA VYRNIRKAINFLLSCNISEIFIVLIAMLLGWGAPFTAVQLLFVNVVADGLPGFALGKEPA EKGIMDEAPIPKNEGIFARGLWQKIGINAAVFTVITLFGFYLGAFVPGVSAYVSNSYEVG QTVAFLILAYSSILHVFNVRSANSVFRVKLSSNKSLFEMVVLALLITTTIALLPFTQELF GLVHISLNHWMLAIFLSFVPIFVNEMIKFHFSEVEEEEEVI >gi|307679270|gb|GL456457.1| GENE 2 3825 - 4073 267 82 aa, chain + ## HITS:1 COG:MJ0272 KEGG:ns NR:ns ## COG: MJ0272 COG1476 # Protein_GI_number: 15668446 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Methanococcus jannaschii # 8 72 13 77 79 68 49.0 4e-12 MRKKKKSSFESSIHVYRAMARMTQQDLANRVGVSRQTIIQLERNKYNPSLLLAHDIANVF GVTIDDVFTFKETLNDDVEQEA >gi|307679270|gb|GL456457.1| GENE 3 4070 - 4222 115 50 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315157501|gb|EFU01518.1| ## NR: gi|315157501|gb|EFU01518.1| hypothetical protein HMPREF9508_02549 [Enterococcus faecalis TX0312] # 5 50 19 64 64 65 100.0 1e-09 MRRSFLCKQRLIIETTIRRSAFFVLPVLSCTSATPSTIRKIVLLSTAYTV >gi|307679270|gb|GL456457.1| GENE 4 4440 - 5471 1274 343 aa, chain - ## HITS:1 COG:SP1416 KEGG:ns NR:ns ## COG: SP1416 COG0809 # Protein_GI_number: 15901270 # Func_class: J Translation, ribosomal structure and biogenesis # Function: S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) # Organism: Streptococcus pneumoniae TIGR4 # 2 342 1 341 342 550 77.0 1e-156 MLSTEDFDFDLPEELIAQTPLKDRASSRLLVVNKETGDMEDKHFHDILDELQPGDALVMN NTRVLPARLYGEKPETGGHLEVLLLTNTEGDTWETLIKPAKRAKVGTEIQFGDGRLKAVV KEELEHGGRIIEFKYDGIFLEILESLGEMPLPPYIKERLDDPDRYQTVYAEENGSAAAPT AGLHFTKELLEEIKAKGVHLVYLTLHVGLGTFRPVSVDNIEEHHMHSEFYRLTEEAAKQL NEVRQAGGRIVAVGTTSIRTLETIGTKFNGEIQADSGWTDIFITPGYQFKVVEAFSTNFH LPKSTLVMLVSAFAGKDLTLAAYQHAIEEKYRFFSFGDAMFIK >gi|307679270|gb|GL456457.1| GENE 5 5637 - 6527 990 296 aa, chain + ## HITS:1 COG:lin0752 KEGG:ns NR:ns ## COG: lin0752 COG0346 # Protein_GI_number: 16799826 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Listeria innocua # 6 296 6 295 296 277 48.0 1e-74 MHAQFHHVSLLARHGQENQAFYTKLLGLRFVKNTVNQDNNRMPHYFYGDYQGTPGSLVTF FIVPLLGNRYEEKNYLATIGLKIPQNSLSFWEQRLTENKIPFNKKEKSLHFSDPDDTHII LTEVPENPLKETLVVSNDIPAAVQIIGLASTEFHVPDSEKTLAFFETFLGWQAVGNTIIL SETESFSVHQTTSDKTSRMGRGSMDHIAFSVADDEALQELHTRALAQGWEIEMYVSRGYF KSLYIREPGGNRVEFATLAPGFTLDEPLEHLGETLALPPFLEPKRTAIEANLYKDM >gi|307679270|gb|GL456457.1| GENE 6 7163 - 8347 1417 394 aa, chain + ## HITS:1 COG:lin1467 KEGG:ns NR:ns ## COG: lin1467 COG1125 # Protein_GI_number: 16800535 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, ATPase components # Organism: Listeria innocua # 1 393 1 392 397 491 65.0 1e-138 MIEFQHVSKFYKGGKVAVDDINLSFDKGEFICFIGTSGSGKTTSMRMLNRMTDPSKGKIL IDGQDIQKINPVELRRQIGYVIQNIGLMPHMTIRENIVLVPKLLKVPVEERNKIAEKMID LVELPREMLDRYPNELSGGQQQRIGVVRALAANQDIILMDEPFGALDPITRDSLQDLVKD LQERLGKTIVFVTHDMDEALKLANKIAIMSEGKVIQFDTPDNILRHPANEFVEEFIGEDR LLQAKPDFTTVDEVMLNSAITITPEKSLQEAIKLMREKRVDTLLVVDNSHVLKGFIDVET LDQQRGKASSVGDILNKDVFFVQKTALLRDALQRILKRGLKYVPVVDEQKRVVGILTRAS LVDIVYDVIWGDETTISEAVEAKQSESETDKEEA >gi|307679270|gb|GL456457.1| GENE 7 8351 - 8986 912 211 aa, chain + ## HITS:1 COG:lin1466 KEGG:ns NR:ns ## COG: lin1466 COG1174 # Protein_GI_number: 16800534 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, permease component # Organism: Listeria innocua # 3 211 6 214 218 244 65.0 8e-65 MSSFFQEYGSEMFSKSIEHIYISFFALLLGVAIAVPVGVWLTRLPKVANIVIGLTSALQT VPSLALLALMIPIFGVGKTPAIIALFIYSLLPILRNTYIGMKNVDENYRDVAKGMGMTNL QSIFSVELPIAMPTIMAGIRLAAVYVIAWATLASYIGAGGLGDMIFSGLNNYQPELIFGG TIPVTILALLADVLLGLLENRLTPKALREGE >gi|307679270|gb|GL456457.1| GENE 8 8989 - 9909 1198 306 aa, chain + ## HITS:1 COG:BS_opuCC KEGG:ns NR:ns ## COG: BS_opuCC COG1732 # Protein_GI_number: 16080434 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) # Organism: Bacillus subtilis # 1 304 1 303 303 342 55.0 5e-94 MKKKLKLSLLFLSSLLLLAGCSLPGLASTSDDNTVAITGGITSEAQILGSIVADMVEHYT DKKTNVINNLATTTINHQAMLNGDASISAARYTGTDVTTTLGLPAEKDPKKAFNLVQSEF EKRYQQTWFPSYGFENTYVFLVTKETAEKYNLKTVSDLGKIADKLVAGVDTAWITREGDG YEGFKKEYNFQFKSILPMQIGLVYDAVNAGKMDVILGYSTDGRIGSYDLVMLKDDKRFFP PYDAAPVVSDKLLKETPEIKDVLNRLDGKISTKKMQELNYQADNDLIEPAVVAERFLKEN NYFEGE >gi|307679270|gb|GL456457.1| GENE 9 9913 - 10575 884 220 aa, chain + ## HITS:1 COG:BS_opuCD KEGG:ns NR:ns ## COG: BS_opuCD COG1174 # Protein_GI_number: 16080433 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, permease component # Organism: Bacillus subtilis # 4 217 1 214 229 251 65.0 6e-67 MNNMNLFQQFIYYFQQNGGYVFQQFLRHFLISIYGVIFAAIVGIPIGIMISRKRSLANWI IRLANIIQTVPALAMLSILMLGMGLGVNTVVVTVFLYSLLPIIKNTYTGMIQVDRNILDV GKGMGMTKVQLLYMVELPLSVSVIMAGIRNALVVAIGITAIGAFVGAGGLGDIIIRGTNA TDGASIILVGALPTAFMAIITDWVLGIIERRLDPASKHSN >gi|307679270|gb|GL456457.1| GENE 10 10647 - 11111 323 154 aa, chain + ## HITS:1 COG:L69304 KEGG:ns NR:ns ## COG: L69304 COG0454 # Protein_GI_number: 15673990 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Lactococcus lactis # 6 149 4 148 152 102 37.0 4e-22 MSNYTIIDLNQQPHLIPSAAQWFSQKWQIPAEAYQASMQEMLTSENHVPHWWVCLNKQQD IVAGVGVIDNDFHNRADLTPNLCALYVEPTFRHQGLAGILLTTVGDFLANSGLKKLYLLT DHTTFYEKYDWEFLTMVTTEEQSCARIYQKQLRQ >gi|307679270|gb|GL456457.1| GENE 11 11146 - 12969 1626 607 aa, chain - ## HITS:1 COG:lin2235 KEGG:ns NR:ns ## COG: lin2235 COG0531 # Protein_GI_number: 16801300 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Listeria innocua # 4 607 5 607 607 700 59.0 0 MADLKRLFIGKPLKSAENDEHKLSRFAALALLSSDALSSIAYGTEQIVVVLVTLSAAAIW YSLPIAAFVIILLISLTLSYRQIIHAYPHGGGAYVVSSENLGRNAGLLAGGSLLVDYMLT VAVSVSAGAEAIISAIPALYGHQVAISIGIVILITLMNLRGLRESASFLMLPVYSFIAII TLLIVVGLFKIVTGAQPLNATALPGAVVPGISIALVLRAFSSGSSSLTGVEAISNAVPFF KKPRAKNAAGTLALMATILGFFFVGITFINYWYGIVPKEEVTVLSQIGKAVFGQNILYYL LQFATALILAVAANTGFSAFPVLAYNLAKDKFMPHMYMDRGDRLGYSNGILTLAAGSIVL LLIFQGSTERLIPLYSIGVFIPFALSQSGMVVKWRKETKNWLPKSIANIVGAFISFAIIA ILFIYRLGDIWPFFIIMPVLIYAFYRVNTHYKNVAEQLRLEDGAQLHEFDGNTVIVLVGN VTKANVGALNYARSIGDYVVAMHVSMDENVEKEKEIQEEFKKHFPDVRLSIVHSSYRSLQ NPILRYVDLVSKNATKHNYSTTVLVPQFVPNKRWQNILHNQTSLRLRIRLAWRENIIVAT YSYHLKK >gi|307679270|gb|GL456457.1| GENE 12 13267 - 14436 1411 389 aa, chain - ## HITS:1 COG:CAC0606 KEGG:ns NR:ns ## COG: CAC0606 COG0053 # Protein_GI_number: 15893895 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted Co/Zn/Cd cation transporters # Organism: Clostridium acetobutylicum # 21 386 32 400 403 276 38.0 7e-74 MIQALLQRYEKKIERRKLEKRTAFGAFAGRIGLVSNLFLFVSKFMIGLLSGSVSIMADAI NSLSDTISSVLTLVGFYIAGKPADKEHPYGHERFEYISGMLVSLVITFIGFEFLTTSVDR ILHPESIKVTPVLFAVLALSIGIKIWQGLFYKKVSAKIDSQALVASAKDSFNDVYTTLAV LVSAFIEGVTGLRIDGYIGFLIAAYIIYSGLQLIREFINELMGMRPSQTEIDEMKNVLSK METIVGYHDLLIHNYGPSQTFASVHIEIDDRWDLNKAHQTIDAIEAKFKEELDVNLVCHI DPVNLYDPTQQFVHQTIKKIIRSFDASLKVHDIRLVTHGEEPKILFDLVLPTESKLSEFE LGVEIQRQVYEKIGRYKVEITFDHTYLLQ Prediction of potential genes in microbial genomes Time: Tue Jul 5 20:36:43 2011 Seq name: gi|307679269|gb|GL456458.1| Enterococcus faecalis TX0411 genomic scaffold Scfld184, whole genome shotgun sequence Length of sequence - 801 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 522 545 ## Bsel_0202 type I site-specific deoxyribonuclease, HsdR family Predicted protein(s) >gi|307679269|gb|GL456458.1| GENE 1 1 - 522 545 173 aa, chain + ## HITS:1 COG:no KEGG:Bsel_0202 NR:ns ## KEGG: Bsel_0202 # Name: not_defined # Def: type I site-specific deoxyribonuclease, HsdR family # Organism: B.selenitireducens # Pathway: not_defined # 3 173 884 1054 1054 212 60.0 7e-54 GEDFSTIEFYSENTTKLYDIDSTYIDQLLGTYAANSSDAREEIEKALAKLNKTEGVKEVY RQILNAFDVGTLDSNEDIFVIKRRYFTQASDDLIHVFSNEWFVSEKELHASNLQYLPGED PIPNMKAIINSKDYEGYKAKHPEAKPFKYPQEMKRAWRKMLDDELIPLENELR Prediction of potential genes in microbial genomes Time: Tue Jul 5 20:36:47 2011 Seq name: gi|307679268|gb|GL456459.1| Enterococcus faecalis TX0411 genomic scaffold Scfld190, whole genome shotgun sequence Length of sequence - 1775 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 385 - 1635 839 ## COG3547 Transposase and inactivated derivatives Predicted protein(s) >gi|307679268|gb|GL456459.1| GENE 1 385 - 1635 839 416 aa, chain + ## HITS:1 COG:FN1357 KEGG:ns NR:ns ## COG: FN1357 COG3547 # Protein_GI_number: 19704692 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 3 407 2 385 391 103 26.0 6e-22 MKLFVGLDVSSEKLDACFMTDDSTCSVLKEASYGNSQLGASQIKEYILEFSQKFEIESLV IGMEATSLYSFHPAMFFKEDLELNQLNLMVSVEQPNKIKKYRDIFEENKNDQIDAFYIAD YFRIQRQVNSIIKEEEYLALQHLTRTRYQLIKQLVRTKQHFIENIYYKCNTLSKELKAEG GSVLSATLVTLMTEDYTMDQLAELSLEEFANLIQKLGKYRFKNPEGIAKAISKAIRSSYR LGKVHQDSVDIVLGVLAKEIRSLEKLIKDLDKAIDDLVVVLPEYQCLTSIPGIGPVYAAG ILAEIGPINRFSDESKLAKYAGLYWRQNQSGNSEYENTPMAKRGNRYLRYYLVEATNSVR RYEPEYHAYYKKKYAETPKHKHKRAIVLTARKFTRLVDTLLRNHQLYMPPRSVIDK Prediction of potential genes in microbial genomes Time: Tue Jul 5 20:36:48 2011 Seq name: gi|307679267|gb|GL456460.1| Enterococcus faecalis TX0411 genomic scaffold Scfld193, whole genome shotgun sequence Length of sequence - 1539 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 367 283 ## Bcell_3752 hypothetical protein 2 1 Op 2 . + CDS 404 - 730 303 ## gi|307292468|ref|ZP_07572319.1| conserved domain protein + Prom 787 - 846 5.8 3 2 Tu 1 . + CDS 884 - 1538 304 ## gi|312952953|ref|ZP_07771809.1| hypothetical protein HMPREF9504_02068 Predicted protein(s) >gi|307679267|gb|GL456460.1| GENE 1 2 - 367 283 121 aa, chain + ## HITS:1 COG:no KEGG:Bcell_3752 NR:ns ## KEGG: Bcell_3752 # Name: not_defined # Def: hypothetical protein # Organism: B.cellulosilyticus # Pathway: not_defined # 1 121 1 128 129 70 29.0 2e-11 MYCRKCGKEITNESKYCQFCGALQETDETTGTDTVKKSTEQTINEMKEQIVHGQETGKLY LIIGWISMVVSLAFIPVVFGAVAVIMGYLYREKDEQMGTILMIAGVAGAIFGVLLGMSMS Y >gi|307679267|gb|GL456460.1| GENE 2 404 - 730 303 108 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307292468|ref|ZP_07572319.1| ## NR: gi|307292468|ref|ZP_07572319.1| conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecium TX0082] conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecium TX0082] conserved domain protein [Enterococcus faecalis TX4000] conserved domain protein [Enterococcus faecalis TX2141] # 1 108 8 115 115 195 99.0 1e-48 MNKVNMNKKFVIIGIVVLAIIGIIFSRMTGSSGLEKSSVPLVTQILQEQYNLNRTCDDVT ITHDNGDNTYRAKATLDNGSAININVEYYPKKDRVYVEIPYTEVLMLN >gi|307679267|gb|GL456460.1| GENE 3 884 - 1538 304 218 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|312952953|ref|ZP_07771809.1| ## NR: gi|312952953|ref|ZP_07771809.1| hypothetical protein HMPREF9504_02068 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9504_02068 [Enterococcus faecalis TX0102] # 1 218 1 218 241 387 96.0 1e-106 MKKKKLLWICLAILLIIGGIEIFTTYRLKTNQPKQYVSDMLNIIEEIDSEMKAFSKTSMD LGERYDFKGFMEDKMDEVSSREIPEGTPKAVRDTKDTLLEAIDNVNTALLTNDVKLLEQG QLCFSIAQAIYTEFLDGNIKEKSLNEKLNSFVETYTAIPPTWKLVNEDKGITINTDTEIS TDAQSLSDLLANLTGISNAVTEQVGKDIPLRLLENGKK Prediction of potential genes in microbial genomes Time: Tue Jul 5 20:37:23 2011 Seq name: gi|307679266|gb|GL456461.1| Enterococcus faecalis TX0411 genomic scaffold Scfld196, whole genome shotgun sequence Length of sequence - 46597 bp Number of predicted genes - 49, with homology - 49 Number of transcription units - 31, operones - 15 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 388 - 447 4.5 1 1 Tu 1 . + CDS 467 - 709 69 ## gi|307292471|ref|ZP_07572321.1| hypothetical protein HMPREF9509_02758 + Term 820 - 875 16.8 + Prom 843 - 902 9.6 2 2 Tu 1 . + CDS 931 - 1674 556 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) + Term 1678 - 1721 6.9 - Term 1618 - 1662 1.7 3 3 Tu 1 . - CDS 1692 - 2258 309 ## COG2169 Adenosine deaminase - Prom 2328 - 2387 6.2 + Prom 2312 - 2371 2.6 4 4 Op 1 . + CDS 2397 - 2888 556 ## COG0350 Methylated DNA-protein cysteine methyltransferase 5 4 Op 2 . + CDS 2901 - 3413 255 ## PROTEIN SUPPORTED gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) 6 4 Op 3 . + CDS 3426 - 4100 710 ## COG1418 Predicted HD superfamily hydrolase + Prom 4133 - 4192 5.1 7 5 Op 1 . + CDS 4243 - 5178 1093 ## COG0053 Predicted Co/Zn/Cd cation transporters 8 5 Op 2 . + CDS 5223 - 5621 373 ## EF0281 hypothetical protein - Term 5624 - 5680 7.4 9 6 Tu 1 . - CDS 5720 - 6472 988 ## COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH) - Prom 6500 - 6559 7.8 10 7 Op 1 8/0.000 + CDS 6770 - 8008 1537 ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase 11 7 Op 2 . + CDS 8010 - 8444 680 ## COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases + Term 8477 - 8527 7.2 + Prom 8505 - 8564 12.9 12 8 Tu 1 . + CDS 8622 - 9557 1075 ## COG0167 Dihydroorotate dehydrogenase + Term 9558 - 9607 14.5 - Term 9554 - 9588 6.2 13 9 Tu 1 . - CDS 9596 - 10243 578 ## EF0286 fibronectin-binding protein, putative - Prom 10427 - 10486 6.3 + Prom 10510 - 10569 5.0 14 10 Tu 1 . + CDS 10598 - 11158 817 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) + Term 11163 - 11210 12.5 + Prom 11241 - 11300 4.5 15 11 Tu 1 . + CDS 11327 - 11464 187 ## EF0288 hypothetical protein + Term 11486 - 11531 10.6 + Prom 11473 - 11532 3.5 16 12 Op 1 8/0.000 + CDS 11554 - 12471 1168 ## COG0031 Cysteine synthase 17 12 Op 2 . + CDS 12485 - 13621 1457 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases + Term 13623 - 13669 10.1 - Term 13611 - 13656 13.7 18 13 Op 1 8/0.000 - CDS 13658 - 15088 1377 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 19 13 Op 2 1/0.077 - CDS 15115 - 16449 1186 ## COG1455 Phosphotransferase system cellobiose-specific component IIC - Prom 16477 - 16536 4.0 - Term 16562 - 16614 18.3 20 14 Tu 1 . - CDS 16656 - 17384 631 ## COG1737 Transcriptional regulators - Prom 17407 - 17466 8.8 + Prom 17424 - 17483 10.5 21 15 Tu 1 . + CDS 17631 - 18173 498 ## COG0262 Dihydrofolate reductase + Prom 18176 - 18235 2.1 22 16 Op 1 . + CDS 18305 - 19672 1223 ## COG0168 Trk-type K+ transport systems, membrane components 23 16 Op 2 . + CDS 19693 - 20856 1410 ## COG0475 Kef-type K+ transport systems, membrane components + Term 20906 - 20963 3.6 + Prom 20858 - 20917 5.2 24 17 Op 1 1/0.077 + CDS 20985 - 21425 500 ## COG3682 Predicted transcriptional regulator 25 17 Op 2 . + CDS 21441 - 23927 3140 ## COG2217 Cation transport ATPase 26 17 Op 3 . + CDS 23949 - 24155 286 ## EF0299 copper transport protein CopZ + Term 24164 - 24203 9.4 - Term 24143 - 24199 19.1 27 18 Op 1 . - CDS 24200 - 25570 1159 ## EF0300 hypothetical protein 28 18 Op 2 . - CDS 25570 - 25959 442 ## COG1725 Predicted transcriptional regulators - Prom 25985 - 26044 6.4 + Prom 25951 - 26010 6.5 29 19 Tu 1 . + CDS 26109 - 27437 1439 ## COG3579 Aminopeptidase C + Term 27448 - 27503 8.4 - Term 27440 - 27471 3.5 30 20 Op 1 4/0.000 - CDS 27495 - 28115 630 ## COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family 31 20 Op 2 . - CDS 28137 - 29111 1107 ## COG0346 Lactoylglutathione lyase and related lyases - Prom 29158 - 29217 8.5 + Prom 29205 - 29264 7.8 32 21 Op 1 12/0.000 + CDS 29394 - 29729 466 ## COG2076 Membrane transporters of cations and cationic drugs 33 21 Op 2 . + CDS 29726 - 30037 528 ## COG2076 Membrane transporters of cations and cationic drugs - Term 30080 - 30122 5.0 34 22 Op 1 1/0.077 - CDS 30133 - 31179 1067 ## COG3469 Chitinase 35 22 Op 2 . - CDS 31222 - 31806 770 ## COG3397 Uncharacterized protein conserved in bacteria - Prom 31897 - 31956 7.8 + Prom 31975 - 32034 8.1 36 23 Op 1 . + CDS 32081 - 32815 916 ## COG3884 Acyl-ACP thioesterase 37 23 Op 2 . + CDS 32866 - 33699 814 ## COG1801 Uncharacterized conserved protein 38 23 Op 3 . + CDS 33716 - 34252 562 ## COG4696 Uncharacterized protein conserved in bacteria - Term 34232 - 34267 6.0 39 24 Tu 1 . - CDS 34275 - 35627 1561 ## COG0527 Aspartokinases - Prom 35658 - 35717 5.3 + Prom 35725 - 35784 8.0 40 25 Tu 1 . + CDS 35814 - 36500 856 ## COG0637 Predicted phosphatase/phosphohexomutase + Prom 36516 - 36575 8.3 41 26 Op 1 3/0.000 + CDS 36686 - 38422 2160 ## COG4477 Negative regulator of septation ring formation + Term 38439 - 38478 8.4 + Prom 38464 - 38523 6.0 42 26 Op 2 . + CDS 38548 - 39693 1186 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes + Term 39694 - 39751 15.3 - Term 39689 - 39732 7.2 43 27 Op 1 40/0.000 - CDS 39745 - 40437 745 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 44 27 Op 2 . - CDS 40434 - 41915 1483 ## COG0642 Signal transduction histidine kinase - Prom 42061 - 42120 11.0 + Prom 41968 - 42027 9.0 45 28 Tu 1 . + CDS 42101 - 43078 1241 ## EF0374 putative lipoprotein + Term 43098 - 43152 14.6 + Prom 43114 - 43173 7.8 46 29 Tu 1 . + CDS 43263 - 44228 1110 ## EF0375 hypothetical protein + Term 44256 - 44295 6.2 + Prom 44272 - 44331 13.3 47 30 Op 1 . + CDS 44447 - 45055 688 ## EF0376 hypothetical protein 48 30 Op 2 . + CDS 45155 - 45490 369 ## EF0376 hypothetical protein + Term 45509 - 45554 7.1 + Prom 45557 - 45616 4.9 49 31 Tu 1 . + CDS 45664 - 46467 1018 ## COG0666 FOG: Ankyrin repeat Predicted protein(s) >gi|307679266|gb|GL456461.1| GENE 1 467 - 709 69 80 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307292471|ref|ZP_07572321.1| ## NR: gi|307292471|ref|ZP_07572321.1| hypothetical protein HMPREF9509_02758 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9509_02758 [Enterococcus faecalis TX0411] # 1 80 1 80 80 93 100.0 6e-18 MARKQRFIVKSMLLSFLILGVLSFIFKEYIFENVGLLRASLALIVFFIGEYIYLDYTLSN NRALLICSVLIFLLSASLLF >gi|307679266|gb|GL456461.1| GENE 2 931 - 1674 556 247 aa, chain + ## HITS:1 COG:L130660 KEGG:ns NR:ns ## COG: L130660 COG0596 # Protein_GI_number: 15673278 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Lactococcus lactis # 6 241 9 245 249 217 49.0 2e-56 MKNRTKSRWKKIVLGLGLFLVILVIGLTIFIKNSTYQATDSALKISQSATQEKNYDYYTN GQKNDTALIFYPGALVAPASYSEWAQEVATKGYDVYVVHFPLNLAVLAPNAAEQIIKDHP QQNFVLAGHSLGGVMASRFVAENEQRIKGMIYLASYPDEKGALNKQDLPVLSITATNDGV LNWTSYQKAKQFLPKDTQYVSIEGGNHAGFGNYGVQKGDNKATISNEQQQTEISQLIVAW LQSRPNK >gi|307679266|gb|GL456461.1| GENE 3 1692 - 2258 309 188 aa, chain - ## HITS:1 COG:lin2345 KEGG:ns NR:ns ## COG: lin2345 COG2169 # Protein_GI_number: 16801408 # Func_class: F Nucleotide transport and metabolism # Function: Adenosine deaminase # Organism: Listeria innocua # 3 185 2 184 184 190 48.0 1e-48 MKTTYRLTQKRWEAIQNNNTQFDGDFFYGVTTTKIFCRPSCPSRVPNKNHVLIFKTAQEA LTLGFRPCKRCQPTGQVVPNEEWVAQIKQFIDRHSAEPLSLDYLAQACHGSPFHLQRTFK EQTKQTPLAYLTSIRIRQAQELLLHSPLTIQQIAKKVGFQTAAYFATTFKKETGVTPSVY RSKNEPKK >gi|307679266|gb|GL456461.1| GENE 4 2397 - 2888 556 163 aa, chain + ## HITS:1 COG:lin2344 KEGG:ns NR:ns ## COG: lin2344 COG0350 # Protein_GI_number: 16801407 # Func_class: L Replication, recombination and repair # Function: Methylated DNA-protein cysteine methyltransferase # Organism: Listeria innocua # 3 162 2 152 160 157 51.0 1e-38 MAKKIYYAQQEWQNDHYYLGVTDAGLAFVGSANQSIEELKNWYPQAQLEASEKKTAPYKE ALISYLNQHSTTFACPIDIEGTPFQKEVWQALQEIPYGETITYQEISEKIGRPRAVRAVG TAIGKNPLLMVIPCHRVIGSKGQLTGYRGGLAMKQALLTFEQS >gi|307679266|gb|GL456461.1| GENE 5 2901 - 3413 255 170 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) [Campylobacter concisus 13826] # 10 162 20 172 185 102 33 3e-21 MNNYQWYTEQWGKPTREDDLLFLLLTVGVFQVGLSWKAAAGKKVAFMKNFCQMKPEKVAA LLPDEVDRIVADPDMIRNRRKIEATIKNAQAILKVQEEFGSFANYLWQFVKNVPVLSIYE EAYQVPRTQFLSDNVAKDLKKRGFSFVGPIVTNMFLKASGIIQVEILNPE >gi|307679266|gb|GL456461.1| GENE 6 3426 - 4100 710 224 aa, chain + ## HITS:1 COG:BH2835 KEGG:ns NR:ns ## COG: BH2835 COG1418 # Protein_GI_number: 15615398 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Bacillus halodurans # 11 222 3 213 215 216 51.0 2e-56 MFENESLSFEEQTIIQAAERYVQQELANEASGHDWWHIYRVTQLAKTIAEKEQANLFLCI LTALLHDIGDEKFNESEEAGLLKVQQWLEANNVSTEQTNHILSIIANMSFKGGNTGKTVT TLEGKVVQDADRLDAIGAIGIARVMAYSGNKGRLIHDPHKQPREQLTQEEYRNGEDTAIM HFYEKLLKLKEQMNTNYGRLLAEKRHQFMELYLEEFYQEWDGHR >gi|307679266|gb|GL456461.1| GENE 7 4243 - 5178 1093 311 aa, chain + ## HITS:1 COG:L67760 KEGG:ns NR:ns ## COG: L67760 COG0053 # Protein_GI_number: 15673428 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted Co/Zn/Cd cation transporters # Organism: Lactococcus lactis # 1 310 1 310 314 392 69.0 1e-109 METKKSSGMFAVIAALIANILVAISKFVGFALSGSTAMMNESIHSVVDCSNQVLLLFGNK RASRGQSALHQFGEGRAKYFFSTIVATMLFFGGGALGVMEAIQKLLHPSHEVENVAIVIG ILIFGLLVEGSSLRVAMKEIKELNTEKLSLLKFLRESRHSEILIIFTEDFCAVIGLCLAL VGTLLTMVTGIAAFDAISGLLIGLLLMCAAIFLAKEFYSLIIGESVTATDLAKIKTAFDR ADVEKLIDVKTVHLGPTEILVAAKIDVVEPMEEDAPDVVNAIERDIRSKMPDKKIYIYIE VDDYDVNYVRK >gi|307679266|gb|GL456461.1| GENE 8 5223 - 5621 373 132 aa, chain + ## HITS:1 COG:no KEGG:EF0281 NR:ns ## KEGG: EF0281 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 132 1 132 132 248 97.0 8e-65 MQEAIITSTVDLTSGGCNACGLVEDTVYTLAMNGVDIPLDGLTVAHLVSAVVARNGFKQE LKMDMLDDEYILYRKEDTAVTFKEAYNHLSYDNGSEKIQSKNKLEDLPKLFEQVNQILTT VFGIGTVNFIIE >gi|307679266|gb|GL456461.1| GENE 9 5720 - 6472 988 250 aa, chain - ## HITS:1 COG:L161132 KEGG:ns NR:ns ## COG: L161132 COG0623 # Protein_GI_number: 15672548 # Func_class: I Lipid transport and metabolism # Function: Enoyl-[acyl-carrier-protein] reductase (NADH) # Organism: Lactococcus lactis # 1 250 1 250 250 337 71.0 1e-92 MFLQNKNVVVMGVANKKSIAWGCAKALKDQGANVIYTYQNERMKKQVVKLADENDLLVEC DVASDASIQAAFETIKNEVGTIDGLVHAIAFAKKEELSGNVSDITRDGFLLAQDISSYSL LAVTHYAKPLLNPGSGIVTLTYLGSERAIPNYNMMGIAKASLETAVKYLAFELAADKIRV NGISAGAIKTLAVTGVKDYDQLISISNERTPDKTGVTIEEVGNTCAFLVSELASGVVGDI IYVDKGVHLT >gi|307679266|gb|GL456461.1| GENE 10 6770 - 8008 1537 412 aa, chain + ## HITS:1 COG:CAC3573 KEGG:ns NR:ns ## COG: CAC3573 COG0304 # Protein_GI_number: 15896807 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Clostridium acetobutylicum # 2 410 3 411 411 441 56.0 1e-124 MKRVVITGMGAVTPLGNTVKEFWHNLVDGKLGIGKITKFDSEDTGVALAGEVKEFDPSAV LERKEQKRMDLFSQYGLVAALEAWEMSGLTEATIDPTRLGVIVGSGIGGMTTLQDQVRVM DKKGAKRVTPFFVPMVIANMAAGNISIRLGAKGPSQTIVTACASATNAIGEAFRTIKYGL ADMMVTGGTEATICEIGIAGFAALNALNTTEDATRASIPFDKERKGFVMGEGAGMLILEE LEHAQKRGATIYGEIVGYGSNCDASHMTAPLKDGSGAAAAMEMAIAEAGITPEQIGYINA HGTSTPANDAAETTAIKRVFGERASQIPISSTKSMTGHLLGAAGGIEAIACVQTLQEGKA HPTVGYQVADPDCDLDYVTEGARDITADYTISNSFGFGGHNGVICLKKWEEN >gi|307679266|gb|GL456461.1| GENE 11 8010 - 8444 680 144 aa, chain + ## HITS:1 COG:L160425 KEGG:ns NR:ns ## COG: L160425 COG0764 # Protein_GI_number: 15672547 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases # Organism: Lactococcus lactis # 2 142 4 143 151 197 71.0 6e-51 MKKVMTATEIMEMIPNRYPICYIDYVDEIIPNEKIIATKNVTINEEFFQGHFPGNPTMPG VLIIEALAQVGSILILKMDQFEGETAYIGGINKAKFRQKVVPGDVLKLHFEIVKLRDFVG IGKATAYVEDKKVCECELTFIVGR >gi|307679266|gb|GL456461.1| GENE 12 8622 - 9557 1075 311 aa, chain + ## HITS:1 COG:L192589 KEGG:ns NR:ns ## COG: L192589 COG0167 # Protein_GI_number: 15673534 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Lactococcus lactis # 3 311 2 311 311 438 67.0 1e-123 MDISVEFSGHKLANVLMNASGIHCMTIKEMDELAASQAGAFVAKTATPNPRQGNEEPRYF DTPLGSINSMGLPNLGIDYYLDYQIARQKEFPEELRFLSVSGMNYEENIAILKKVQESEY TGVTEFNLSCPNLPGKPQIAYDFELTEKLLTEVFQFFTKPLGVKLPPFFDIAHFDAMAEI LNKFPLVYVNSINSIGNGLYIDSDKEEVVIKPKGGFGGLGGEYVKPTALANVRAFAQRLK PEIKIIGTGGITCGKDVFEHLLCGATLVQVGTQLHQEGPQVFERLAKELQEIMAAKGYES IEEFRGKLKEM >gi|307679266|gb|GL456461.1| GENE 13 9596 - 10243 578 215 aa, chain - ## HITS:1 COG:no KEGG:EF0286 NR:ns ## KEGG: EF0286 # Name: not_defined # Def: fibronectin-binding protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 215 1 215 215 417 98.0 1e-115 MNPTIQPYQFNIIKEQVAVLLNTYTSVNDATTVKTVQALCVEKINGLFPEEHPAVTILLD KVMDRRLTRARAEKYLDELKETVLSFKEPSTPQVTKVFRKVKKLKIPEWENMDLRNNTYV GWNDAGTQKKFILAYRENKLIGVHGTLSPTIVKGVCSICQTITNVSMFLATTKSGGDGTY TKKGNYICHDSDTCNQQLTQPEYLEAFMENVKAVK >gi|307679266|gb|GL456461.1| GENE 14 10598 - 11158 817 186 aa, chain + ## HITS:1 COG:SPy1821 KEGG:ns NR:ns ## COG: SPy1821 COG0231 # Protein_GI_number: 15675650 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Streptococcus pyogenes M1 GAS # 1 185 1 185 185 258 74.0 4e-69 MIAASDLKAGMTFEQDGKLIKVMEASHHKPGKGNTVMRMKLKDVRTGSTTDTTMRPDEKV KKAHIDTKPVQYLYSQDDMAIFMDLETYEQYEVPTALIEEELKYLLENMEVKIQFYGEEV IGLTLPTTVILRVAETQPSIKGATVTGSGKPATMETGLVVNVPDFVEADELLEINTAEGT YLKRAK >gi|307679266|gb|GL456461.1| GENE 15 11327 - 11464 187 45 aa, chain + ## HITS:1 COG:no KEGG:EF0288 NR:ns ## KEGG: EF0288 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 45 1 45 45 71 100.0 1e-11 MTKKQASLFLETESCCCMVQNSAAYSFVMGKTSVISEKLPNTIPL >gi|307679266|gb|GL456461.1| GENE 16 11554 - 12471 1168 305 aa, chain + ## HITS:1 COG:HP0107 KEGG:ns NR:ns ## COG: HP0107 COG0031 # Protein_GI_number: 15644737 # Func_class: E Amino acid transport and metabolism # Function: Cysteine synthase # Organism: Helicobacter pylori 26695 # 1 304 2 305 306 394 67.0 1e-109 MIAQSILDTIGATPLFEFTSEQYPMPEGTKIYAKLEYLNPGGSVKDRLGVHLLKEAMKTG KINQATTIIEPTAGNTGIGLALAASQLGLKTIFVVPEKFSQEKQQLMQALGAKIVPSPTE QGIVGAITSAQDLAKEIPNSYVPLQFENPDNPAAYYEGLGPEIVQDLGGKITSFVAGLGS GGTFAGVGRYLKEKNSKTQLWGVEPEGSILNGGPAHGHEIEGIGVEFVPPFLKQIPVDGF YTISDEDGFFWVKQLAKKSALLVGSSSGAAFAAALREARRLPAGSTIVTIFPDGSDRYLS KNIYS >gi|307679266|gb|GL456461.1| GENE 17 12485 - 13621 1457 378 aa, chain + ## HITS:1 COG:HP0106 KEGG:ns NR:ns ## COG: HP0106 COG0626 # Protein_GI_number: 15644736 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Helicobacter pylori 26695 # 1 376 1 376 380 530 69.0 1e-150 MKFNTKLIHGGISKDTTTGAVSVPIYQTSTFEQNGVGQPKEYEYSRSGNPTRHALETLIA ELEGGSHGFAFSSGLAGIHAIISMFGPEDHILLGDDVYGGSFRLLDKVFVANGLSYTIVN ASDLSTIEAAIQPNTKALFLETPSNPLLKITDIEAAAKLAKKHQLLTIVDNTFATPYFQR PLALGADIVVHSGTKYLGGHSDVVSGLVVTNNPESAEKIAFLQNAIGAVLGPHDSWLVQR SLKTLGVRMAAHAQNAKKIAEFLEAHPAVATVYYPGLASHPGHEIAQKQMSGFSGMISFE LAKDEQVVPFVEALEIFTLAESLGGVESLIEVPAIMTHASIPKENREAVGIKDGLIRLSV GIEAVEDLLADLEKGLQA >gi|307679266|gb|GL456461.1| GENE 18 13658 - 15088 1377 476 aa, chain - ## HITS:1 COG:L22116 KEGG:ns NR:ns ## COG: L22116 COG2723 # Protein_GI_number: 15672399 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Lactococcus lactis # 4 476 3 478 478 771 76.0 0 MSILKNDFLWGGAVAAHQLEGGWDQGGKGVSVADVMTAGAHGVPRKITAGVLPDEHYPNH EAIDFYHRYQEDIQLFKELGLNCFRTSIAWTRIFPNGDEETPNEEGLRFYDALFDECLKN GIEPVVTLSHFEMPYHLVTNYGGFRNRQVIDFFVKFAEVCFTRYQKKVKYWMTFNEINNQ ANYEEDFAPFTNSGIAYQEGEDREAIMYQAAHYELVASARAVKIGHAINPDFQIGCMIAM VPIYPYSCNPEDMMMSVSAMQKRYWFTDVHVRGHYPSAIQCYLKRKNISLDVTEEDLTDL ANSCVDYIGFSYYMSFAVKGAEKAPTFDYNEAKDLVRNPYVATSDWGWQIDPMGLRYAMN WFNDRYELPLFIVENGFGAIDELEPDGTINDTYRIAYLREHIEMMKEAVAYDGIDLMGYT PWGFIDLVSASTGEMKKRYGFIYVDKDNDGHGTLERRKKKSFAWYQQVIATNGEEL >gi|307679266|gb|GL456461.1| GENE 19 15115 - 16449 1186 444 aa, chain - ## HITS:1 COG:CAC0386 KEGG:ns NR:ns ## COG: CAC0386 COG1455 # Protein_GI_number: 15893677 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Clostridium acetobutylicum # 5 426 7 444 450 410 51.0 1e-114 MNEWINEKLLPPVLKFVNTKAITALRNGMLYTMPFTIVGSVFLLLANFPVTAISEWVNAS GLAVYFNQAYGASFAIMSLFAVIGIAYSYVKSEGFEGLPAGMIAMVVFILFMSSEVKDAV SGAVVGNVINKDWTAGKGMITAIIVGLLVGVVYSWFLRHDIRIKLPEAVPENVANSFTAL IPASVIVTGAMLIFILLDKVFNTTFFDFIYEVLQSPLQGVTDSLGGALLLGFVIPLFWFF GVHGSTIVGGIMGPILQANSLENTEILKSGKDLTLANGGHIVTQQFLDQFLTVTGAGMTI GLVVFMVFFAKSAQFKQLGRLSIGPAVFNINEPIVFATPIVMNPIMAVPFIITPIVSSVV TYFSLYTGLVPLFTAVQVPWTTPPIISGLLVGGWQAALLQVVVLTMSFFIYLPFAKKMDA LNYAEETNQPITEETLEKVEAQNV >gi|307679266|gb|GL456461.1| GENE 20 16656 - 17384 631 242 aa, chain - ## HITS:1 COG:L17893 KEGG:ns NR:ns ## COG: L17893 COG1737 # Protein_GI_number: 15672394 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 1 241 2 241 248 208 42.0 9e-54 MFDLEKVQTLNELEMLVYHYVLEHLHQIPQQTIRQLATSCHVSTSTILRFCNKMGYAGFS ELKYAVKEEAKQTQTFENFYDATVHVDAFLKKLNQETYYEMLRPAIQMIVQARHVAFTGI GTSGILGSYGSRYFANLNINSYSIADPFTPIPKRGFENTLALILSVSGETNEMIKQMTDF KTAGAKVLSITNNQHSTIARLADYNISYYMPDERSPFADKSVNTTTQIPVIALIELLAHQ AS >gi|307679266|gb|GL456461.1| GENE 21 17631 - 18173 498 180 aa, chain + ## HITS:1 COG:BS_ywjB KEGG:ns NR:ns ## COG: BS_ywjB COG0262 # Protein_GI_number: 16080775 # Func_class: H Coenzyme transport and metabolism # Function: Dihydrofolate reductase # Organism: Bacillus subtilis # 1 176 1 173 174 122 39.0 3e-28 MAREVILFIAASIDGFIADKAGGVAWLEENIRGDEEDRSYDEMYEKIDTVVMGRTTYDQV TQELSPDVYFYEDKHSYIITSHPEPSTASRTFTKEDPVTLIRRLKEEDGAGIWIVGGPKV VQPLLAADLIDTFILTTIPLFLGEGIALYETMAKSIPVRLKQVYQKNELVYSIYQRENKN >gi|307679266|gb|GL456461.1| GENE 22 18305 - 19672 1223 455 aa, chain + ## HITS:1 COG:BS_yubG KEGG:ns NR:ns ## COG: BS_yubG COG0168 # Protein_GI_number: 16080162 # Func_class: P Inorganic ion transport and metabolism # Function: Trk-type K+ transport systems, membrane components # Organism: Bacillus subtilis # 2 455 5 445 445 285 41.0 1e-76 MKHQIKKRLYISPVQTIVLGFFLLIVVGTILLMMPFSAQAGQKTQWIDAFFVATSAVCVT GLSPLNTAEHWSPIGQVIIMILIELGGLGFLTVATIFFSLLRKKASLSVRMLYQEALNVS EVSGVFRLMKYIMKFAAIIQLLGAFLLSFQFVPTFGWKKGLFFSLFHAVSAFCNAGFDLL GDSMVPYQNSPYLLLVISFLIIAGGLGFIVWRDIFAMIKGYKNKIKHRVSIHTRLALTVT ATFLVLGTVIFYISEYRHFPADMSFWQRLVNSWFLSVTPRTAGFYSVDYLKMSNPGLIVT ILWMFIGGTSGSTAGGLKTTTFGVLFLQFRAIFKGKQRVEFHERTIPERVVLQAFTLFFL ATFLCVTASVILSFTETLPLKNGIEYIVFEVISAFGTVGLTMGLTPDLTVFGKLVIIFLM FVGRVGVYTVLLSLIKKGLESQSKVQYPKESVMIG >gi|307679266|gb|GL456461.1| GENE 23 19693 - 20856 1410 387 aa, chain + ## HITS:1 COG:L176399 KEGG:ns NR:ns ## COG: L176399 COG0475 # Protein_GI_number: 15673897 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Lactococcus lactis # 7 384 7 379 379 239 43.0 8e-63 MEFLGILCLILITTTLAGVACKRVGIPAVIGQLLVGIVLGPAMLNIVHQDVFVHDFSEIG VIMLMFIAGMECELELLKKYAKPSVMVAILGIVLPVGFTMLIGQLFAFSWKEAFFLGLVL AATSVSISVEVLRELNVLSSKEGATILGASVVDDIVVVIILSVAVGMIGASTGGNTEVSF IVKLIEQGLFFIGIFFLVRFIAPYLLRLSQKMNIGSSVIIMSLIICLGMAYLADLVGLSS VVGAFFAGIAVGQTDAKTEIDFNIEAIGYAVFIPVFFASIGLSVTFNTLGKDLPFILVMT IMAILTKLLGGAWGAKMVGFSNTSSLMVGAGMVSRGEMALIIAQIGYQSKLLSEAYYTSM IVVIILTTLVAPFLLKYFVKKQESALQ >gi|307679266|gb|GL456461.1| GENE 24 20985 - 21425 500 146 aa, chain + ## HITS:1 COG:SPy1717 KEGG:ns NR:ns ## COG: SPy1717 COG3682 # Protein_GI_number: 15675568 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 6 144 1 139 144 100 35.0 1e-21 MAKDKLATITDAEWEVMRVIWTQGKTTSREVHTLLNEKKEWKSTTVKTLLSRLTDKGLVG TEKVGNKYIYYPLVEERRSVETVADELLAKVCSRKVGSVVETILTESQLSYDDLDRLEEL LKEKRKTAVESVPCNCIPGQCQCHLI >gi|307679266|gb|GL456461.1| GENE 25 21441 - 23927 3140 828 aa, chain + ## HITS:1 COG:CAC3655 KEGG:ns NR:ns ## COG: CAC3655 COG2217 # Protein_GI_number: 15896888 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Clostridium acetobutylicum # 1 817 1 814 818 941 63.0 0 MESKTFDIEGMSCASCAQTIEKATAKLPGMAKASVNLATEKLSVTYDQTEVTEEEIKEAV SDAGYKAISPAQQRTFAIEGMSCASCAQTIEKAVNQLSGVQQAIVNLATEKLVVSYDDHQ VTSAEIIKAVTDAGYQATEEVAAGATADQDREKKQKHIAEMWQRFWISAVFTVPLLYIAM GHMVGLPLPAFLNPMTHATTFAMVQLILTLPVLYVGREFFTVGFKALFKGHPNMFSLVAL GTSAAFVYSLYGTVMIFLGDTSFTMALYYESAGVILTLITLGKYFEAVSKGKTSDAIKKL MGLAPKTAHILRDGAEIEVPVDAVQLDDIVIVRPGDKIPVDGVIVSGSSSVDEAMLTGES LPVEKKVGDAVIGASINKNGSFQFKATKVGKETALAQIIQLVEDAQGSKAPIAQLADKIS GVFVPIVIGLAILSGLAWFFLGQESWIFALTITISVLVIACPCALGLATPTAIMVGTGKG AENGVLIKSGDALETTHKIQTIVFDKTGTITEGKPVVTDILVADSALSEAELLTLAASAE QGSEHPLGEAIVGAAKERQLPLAEGSDFSAIPGHGIRVTVNERVLLLGNIKLMKEEAIEL STFVQQADRLAEEGKTPMFVAKDGSFAGIIAVADTVKDSSQTAIARLHKMGIEAVMITGD NKRTAEAIAKQVGIDRVLSEVLPEDKALEVKKLQAEGKKVAMVGDGINDAPALAQADVGI AIGSGTDVAMESADIVLMRSDLMDVPTAVELSKATIKNIKENLFWAFAYNTLGIPVAMGV LHLFGGPLLSPMIAAAAMSFSSVSVLLNALRLKGFKPSTVKKTSGSQK >gi|307679266|gb|GL456461.1| GENE 26 23949 - 24155 286 68 aa, chain + ## HITS:1 COG:no KEGG:EF0299 NR:ns ## KEGG: EF0299 # Name: copZ # Def: copper transport protein CopZ # Organism: E.faecalis # Pathway: not_defined # 1 68 1 68 68 102 100.0 3e-21 MEKTVKIDGMKCDGCVQAVTEKFSGIDGVTNVAVHLADQTAVVTADREVSQDELNTTLAD TKFKVVSE >gi|307679266|gb|GL456461.1| GENE 27 24200 - 25570 1159 456 aa, chain - ## HITS:1 COG:no KEGG:EF0300 NR:ns ## KEGG: EF0300 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 456 1 456 456 822 98.0 0 MAVFFYFILVSVAFFMAFTMGIYANPHKNIILENTLPEDKLQDPSVQAIRKRYKKRLVQL AAVFSVLSLPLLFIPYDSILLFLFLLLLFSFIGSGYYLQIVYIRKMAALKMQNGWLLPKR PLLIDTQLVLNKNQKLISFWWFLPAIILTFAGGFYSLQTAIGSWILFLITVLMLSLFIGG YYFIARLPVKPLTSDSKINQQINDLFRHHWSVLMVLSALVFAPLTILPTLTIVIDYTVAM ALTFCYFILLFVYVGFLFYYLFSMRKKQDQFVLQAGDYRYGDDDQYWRYGIYINPKDPKT MVPDRIGMNLSINLGRPAGKIILAATGILTIAVLFFATVPMFINDFSSHAFQATIENKQI ELSAPLAKTRSIPFNQITAVSLIDDLPQERIRTMGAATDSYLTGEFKVAGKPAYLLIYTK SHPILKIETREKVYYYTAREGQETTKIYQEIKAKLP >gi|307679266|gb|GL456461.1| GENE 28 25570 - 25959 442 129 aa, chain - ## HITS:1 COG:CAC0599 KEGG:ns NR:ns ## COG: CAC0599 COG1725 # Protein_GI_number: 15893888 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 1 124 1 125 125 104 44.0 4e-23 MLLEIDEQSEQPIYQQLIDQIIVGIAKGELVPNESLPSIRQLADEIGVNMMTVSKAYNKL KQSGYIVTDRRNGTKIAAKLPATAVWQQQLHERLELLLAESFLHQQSEAEIQALIQKIYQ NFDSKGRAL >gi|307679266|gb|GL456461.1| GENE 29 26109 - 27437 1439 442 aa, chain + ## HITS:1 COG:SPy1651 KEGG:ns NR:ns ## COG: SPy1651 COG3579 # Protein_GI_number: 15675522 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Streptococcus pyogenes M1 GAS # 1 442 1 443 445 561 61.0 1e-160 MTAIEPKLTEKFHQDFLNNNKQNALQRSVVKNGISASGESVQGAVNNVPVFSVDLATGKV ANQKQSGRCWMFAALNTFRHRMLNAFQLKDFELSQNYTFFWDKYEKSNYFYENIIATADQ PLTSRKVAFLLATPQQDGGQWDMIVSIFDKYGVVPKTAMPESSNSSNSRDLNNYLNKKLR KDATILRSLIEKGASAEEVQKNKEAMLQEIYNFLAISLGTPPETFDFEYRDEEKNYHLDQ NLTPQTFFEKYVGVNLHDYVSIINAPTEDKPFNKTYTVEMLGNVVGGKEVKYLNVEMAAF KKLAAAQLEQGESVWFGCDVGQSSTRDTGIMALDVYDMNDLFDIDFTMTKAERLDFGESL MTHAMVLTGVDIVDGQTTKWKVENSWGEKVGENGFFVMSDAWMDEYTYQIVVHKDLLTDE QKKAWEQAPTVLAPWDPMGALA >gi|307679266|gb|GL456461.1| GENE 30 27495 - 28115 630 206 aa, chain - ## HITS:1 COG:L81206 KEGG:ns NR:ns ## COG: L81206 COG1853 # Protein_GI_number: 15672060 # Func_class: R General function prediction only # Function: Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family # Organism: Lactococcus lactis # 1 205 1 195 196 180 45.0 2e-45 MIHYNSNELSAKTAYKFLSGSIIPRPIAWVTTQDTATGVVNAAPFSFFNAAAAEIPLATL SILRPDKAPKDTARNILATKELVIHFVNEDVLTQMNQTSAPLAAEISEIDTFGIETIASQ TVAVPAIKAAPIRMEARLHQYVPIANHEGQIITDLFIVEITDFYFDSAVFDEEHQYILPK KLQPIARLAGNDYTTLGEIREVRRPT >gi|307679266|gb|GL456461.1| GENE 31 28137 - 29111 1107 324 aa, chain - ## HITS:1 COG:lin0753 KEGG:ns NR:ns ## COG: lin0753 COG0346 # Protein_GI_number: 16799827 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Listeria innocua # 7 316 7 316 319 412 62.0 1e-115 MNTQILGLHHVTAMTSSAEKIYHFFTDILGLRLIKKTVNQDDIETYHLFFADDAGSPGTD MTFFDFSGLPKGTKGTNTISRTSFRVKDDAALDYWVSRFNEYAIDHGEIQERFGKKYLEF EDFDNQRYQLISDEKNQGVAAGTPWKKSNVPSEHALIGLGPAFVTVENYEHLQLVLTEVL GFKLIDAEGSFHLFEVGEGGNGASIIVEHREDLPAAQEGYGNVHHLALRVADEEALRFWI EKINRLEFPNSGFVERFYFKSEYFLAATHVLFELATDGPGFLEDETYEHAGEKLSLPPFL EPKRAGIEEFVRPFDTSDANVQRN >gi|307679266|gb|GL456461.1| GENE 32 29394 - 29729 466 111 aa, chain + ## HITS:1 COG:BH0686 KEGG:ns NR:ns ## COG: BH0686 COG2076 # Protein_GI_number: 15613249 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Bacillus halodurans # 1 111 1 111 114 84 49.0 5e-17 MSKAWLKVIFGAFCEVIWVIGMKHSITWWEILGTVIAIFISFYALIKAGEELPVGTAYAV FVGLGSAGTIVTDHFLFHTPLGIGKVLFLLLLLIGVIGLKMVTGNKEEETR >gi|307679266|gb|GL456461.1| GENE 33 29726 - 30037 528 103 aa, chain + ## HITS:1 COG:BS_ykkD KEGG:ns NR:ns ## COG: BS_ykkD COG2076 # Protein_GI_number: 16078375 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Bacillus subtilis # 1 102 2 104 105 84 46.0 3e-17 MSWLYLVIAGCFEIFGVGSIKLFTTKKDLRSLLILILAFSGSFLFLYLGMRQLPMGVSYA VWTGIGTAGGAILGMLLGESKDLRRIFFIFLIIVSVIGLKLIG >gi|307679266|gb|GL456461.1| GENE 34 30133 - 31179 1067 348 aa, chain - ## HITS:1 COG:lin1996 KEGG:ns NR:ns ## COG: lin1996 COG3469 # Protein_GI_number: 16801062 # Func_class: G Carbohydrate transport and metabolism # Function: Chitinase # Organism: Listeria innocua # 11 347 13 349 352 453 66.0 1e-127 MKLKKIIPAFLLLSTVAVGLWLTPTQASADAADTMVDISGKKVLVGYWHNWASKGRDGYK QGTSASLNLSEVNQAYNVVPVSFMKSDGTTRIPTFKPYNQTDTAFRQEVAQLNSQGRAVL LALGGADAHIQLVKGDEQAFANEIIRQVETYGFDGLDIDLEQLAITVGDNQTVIPAALKI VKDHYRAQGKNFIITMAPEFPYLKPGAAYETYITSLNGYYDYIAPQLYNQGGDGVWVDEI MTWVAQSNDALKYEFLYYMSDSLIHGTRGYLQIPNDKLVLGLPANRDAAGSGYVVEATPV AKTFDQLAKDGNPIRGLMTWSANWDVGQDVNGKSYNNEFATRYSNLVK >gi|307679266|gb|GL456461.1| GENE 35 31222 - 31806 770 194 aa, chain - ## HITS:1 COG:lin2611_1 KEGG:ns NR:ns ## COG: lin2611_1 COG3397 # Protein_GI_number: 16801673 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 8 193 7 191 294 171 47.0 1e-42 MKKSLLTIVLAFSFVLGGAALAPTVSEAHGYVASPGSRAFFGSSAGDNLNTNVGRAQWEP QSIEAPKNTFITGKLASAGVSGFEPLDEQTATRWHKTNITTGPLDITWNLTAQHRTASWD YYITKNGWNPNQPLDIKNFDKIASIDGKQEVPNKVVKQTINIPTDRKGYHVIYAVWGIGD TVNAFYQAIDVNIQ >gi|307679266|gb|GL456461.1| GENE 36 32081 - 32815 916 244 aa, chain + ## HITS:1 COG:SP1408 KEGG:ns NR:ns ## COG: SP1408 COG3884 # Protein_GI_number: 15901262 # Func_class: I Lipid transport and metabolism # Function: Acyl-ACP thioesterase # Organism: Streptococcus pneumoniae TIGR4 # 1 242 1 239 245 176 39.0 3e-44 MGKKHTSSYEVAYYDGDFTGAMKIPALLAVVIKVSEEQTELLGRDAAYVARFGLGWVITN YEIEIHRLPKVGEKVAITTQAMSYNKYFCYRNFWVHDEEGNECVFVKSTFVLMDQKNRKI SSVLPEIIAPFDSEKITKIYRHEKIEKVTEGNFLPYRVRFFDIDGNQHVNNAIYFNWLLD VLGYDFLTTHQPKKILVKFDKEVEYGQEVESHYEIVEQENQLKTRHEIRIDGQTYCEANI DWTN >gi|307679266|gb|GL456461.1| GENE 37 32866 - 33699 814 277 aa, chain + ## HITS:1 COG:lin2505 KEGG:ns NR:ns ## COG: lin2505 COG1801 # Protein_GI_number: 16801567 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 277 2 279 281 261 46.0 9e-70 MIRLGLTSFSEHDYLTGKKRATLYEYASHLPLVEMDTAYYGIPPKERVAEWVKAVPENFR FVMKVYSGISCQGEWQTYYASEEEMITAFLESMAPLIESKKLFAFLVQFSGTFGCTKENV AYLQKIRHWFKDLPIAIELRNNSWYQPNFVKQMLQFMKENQFSLVIVDEPQIPTNPVPFY PYVTNPNLVLFRFHGRNAAGWLANDAEWRKKRTLYHYNTQEIADLSEAVLKMSQEAKEVG VIFNNNSGGDAAENALQMQKVLNLSYDDLNPKQLDLF >gi|307679266|gb|GL456461.1| GENE 38 33716 - 34252 562 178 aa, chain + ## HITS:1 COG:L143879_2 KEGG:ns NR:ns ## COG: L143879_2 COG4696 # Protein_GI_number: 15672719 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 14 170 21 176 184 170 56.0 1e-42 MSEKQSPYEMACAFHEVFNPQQPEQPTAFSPELASRRAEFKVEELVEFLYSAADNDQVLF QQLVNGLKKSVDKAEQKVLAKGKPVSDPLVEEVDALVDLLYFTYGSFCLMGVNPTKIIEI VHQANMGKLFPDGQPHYDPETNKVLKPENWEQDFAPEAKIKAEIQRQLKITETNEKDE >gi|307679266|gb|GL456461.1| GENE 39 34275 - 35627 1561 450 aa, chain - ## HITS:1 COG:SP0413 KEGG:ns NR:ns ## COG: SP0413 COG0527 # Protein_GI_number: 15900332 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Streptococcus pneumoniae TIGR4 # 1 448 1 448 454 564 62.0 1e-160 MNVVKFGGSSLASAPQLQKVLQIVKEEPRRTFVVVSAPGKRTPQDIKVTDLLIQYYQRYL NNEEIESTISAIIRRYEDLFDELHLDKAVLADIAISIRQLATLPKENNAFLFDYFLASGE DNNAKVVASFFNQNGLDARYISPKELGLLVTPEPGNARILPKALEKISAYRETQQILVIP GFFGYTEAGEICTFSRGGSDITGSIVAAGVQADLYENFTDVDGIYVAHPGIIEQPQTIQE LTYREMRELAYAGFAVLHDEALMPAYRANIPVVIKNTNNPHHPGTLITTSRKVKHAPVVG IASDQGFASIYISKYLMNRELGFGRRLLEVLEKLALSYEHMPSGIDDITIVLREDQLTTE IENRLMAQLQEVLAPDELRITHHLSMIMIVGEGMRQRIGVTAESTMALAKEKINLEMINQ GSSEVSIMFGIKKEQEEKAIKALYRTFFHD >gi|307679266|gb|GL456461.1| GENE 40 35814 - 36500 856 228 aa, chain + ## HITS:1 COG:L150333 KEGG:ns NR:ns ## COG: L150333 COG0637 # Protein_GI_number: 15672725 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Lactococcus lactis # 7 219 5 217 222 172 42.0 3e-43 MTESKTAIIFDMDGVLVDSEAYYYERRKAFLAEFDLTIEGLILPELVGADMRSLWQKIEQ VNKKELDIAFLNEQYIAYKKAHPIDYLAVLDENAKRVLQFLKRQGYKIGLASSSTKDAIE EVLTVGQLSSYFDAVVSGEDFEESKPAPDIYLHTLQELAVAPQECIAIEDSEKGIASAKE AGLEVWAMRDEHFGMDQSQADAFLTQLSDICKKISENRIDESSESTPS >gi|307679266|gb|GL456461.1| GENE 41 36686 - 38422 2160 578 aa, chain + ## HITS:1 COG:L7722 KEGG:ns NR:ns ## COG: L7722 COG4477 # Protein_GI_number: 15674133 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Negative regulator of septation ring formation # Organism: Lactococcus lactis # 20 574 19 574 576 397 40.0 1e-110 MKNNWIIILVLVIVIIAAVLYLIGYFMRKKNQEQLDELEVRKEALFDLPVFEEIDDIKKM HLVGQSQNSFREWNQRWVELSTRSFAELESQIYEVENQNEIFRFMKAKKAVVEANETMTE MEAEVEVIRNGLKELRESEERNSLEVQKALDVYEELSKSLKDDKASFGPAYSEIQKQLRN VEIEFTQFVTLNTSGDPIEAREVLEDAERHTYELEDLMKRIPPMYEELNETFPDQLKEIE EGYNQLLADDYVFPEQNFAEEIQHAKKRVENSMADLEKTEIAAVEVANRDTATAIDALYE VMEREIEAKKYVVTNQKIIDDYISHSLKNNRQLMIELDHVSQSYTLNNNELGRSRGFQTE IEEIIRRQKDLEPRMKEHTVPYSEIQAFYKECYKILDDIENQQLEIDASLKELRKGEKVA QEKVDEYEFRLRSIKRYVEKQRLPGLSADYLEFFYVATDRIEDLSRALNKMRINMDEINR LCDLCEDDLELLDKKTKDLVNAAALTEQMMQYANRYRHTHETIRAALDKSMYLFSTEFRY QDALDEIGTALEAVEPGAFKRIEDFYFKNINNPNLTAI >gi|307679266|gb|GL456461.1| GENE 42 38548 - 39693 1186 381 aa, chain + ## HITS:1 COG:L122222 KEGG:ns NR:ns ## COG: L122222 COG1104 # Protein_GI_number: 15672519 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Lactococcus lactis # 1 381 1 380 381 477 61.0 1e-134 MIYFDNSATTPIYPQALDTYVKTSQRIIGNPSSLHDLGNQANRLLQQARKQIAELINVSA NEIYFTSGGTEGDNWVLKGTAIEKREFGNHIIISAVEHPAVTETAEQLVELGFELSYAPV DKEGRVKVEELQKLIRKETILVSVMAVNNEVGTIQPIKKISEVLAEFPKIHFHVDAVQAI GKVNYSEWLTDRVDFATFSAHKFHGPRGIGFMYWKQGKRLAPLLTGGGQENNQRSGTENV PAIVAMAKALRLHLENEQQRPQHVATLRSYLLKALEEFQNVTVFSQDNEHFAPHILCFAL KGIRGEVLVHALEEKQIYISTTSACSSRKKMASSTLYAMHVPGELATSAVRISLDESNTM AEIEQFMIVFNQLYQKFSRVN >gi|307679266|gb|GL456461.1| GENE 43 39745 - 40437 745 230 aa, chain - ## HITS:1 COG:CAC0321 KEGG:ns NR:ns ## COG: CAC0321 COG0745 # Protein_GI_number: 15893613 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 5 228 4 228 230 249 57.0 3e-66 MKPHVLIIEDDPSIADLQKDYLEINDMTVTIEHDGKKGLEAALNEPFDLIILDVMLPTMD GFEICRAIRKKKQTPIMIVSAKKEDIDKIRGLGLGADDYIIKPFSPNELVARAKAHMNRY QLLSKAEQPPQLLKINEIAVDTAAHKVFVLENEVIFTSKEYKLLVFLMEHPNRVWNKEEL FESVWGFDALDTEVSTVVVHIKRIREKLKKANLSDSPIETLWGSGYRFNR >gi|307679266|gb|GL456461.1| GENE 44 40434 - 41915 1483 493 aa, chain - ## HITS:1 COG:CAC0317 KEGG:ns NR:ns ## COG: CAC0317 COG0642 # Protein_GI_number: 15893609 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 149 488 157 493 498 206 37.0 1e-52 MTIKRRFFISYISAIIITLASVLAVLSLASYITLGTVPSLPQAYRMMNKQRPLTANEEES YLALDQLLKKSPKLLDTPLSKELKETIQTIEAKGLSVIIRKNARFPYYSDNLVEKSLSVH IPNYEMNNIMPTGTLDNAGRLYHYVKSDFHYLDGSNGSFIVLKRESSLFEFFTRWIIWMI LLIILVAIAAAWLINKRLTKTTIEPLEALEKATKTLGKDAQKENPFTPTSHQTVSTEVKQ LQLSFEQMWQDLEEANAEREKYEANRKELIANISHDLKTPITSIIGYVEGLMDGVANTEE KKQRYLTVIHEKSLGLNDLIEELFLYSKLDLDRAVFTMEKTNFTRFIAHILEEYRLEQEL VITSVLPTEALYVQMDPTQMNRVITNLIQNSIKFADPTKEQLAFTISLTHNQTDLVLTIT DNGIGIDKKELPYLFERFYRVDKSRTPTVKGSGLGLSIVKQIIDYHQGTITVTSKKGDGT NVIITLPLLEDEK >gi|307679266|gb|GL456461.1| GENE 45 42101 - 43078 1241 325 aa, chain + ## HITS:1 COG:no KEGG:EF0374 NR:ns ## KEGG: EF0374 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 325 1 325 325 503 99.0 1e-141 MKKKKVFSALTLLTFSTLLIAGCAGGANSATDKSSAASSSTAVSSSAEAAKEQSKGQELT EILSSTDWQGTKVYDKNNNDLTAENANFIGLAKYDGETGFYEFFDKETGETRGDEGTFFV TDDGEKRILISDTQNYQAVVDLTEVTKDKFTYKRMGKDKDGKDVEVFVEHIPYSDEKLTF TNGRKDLETETGKIVTSEPGDDILGATLWNGTKVLDEDGNDVTEANKMFISLAKFDNKTS KYEFFDLETGKTRGDFGYFQVIDNNKIRAHVSIGDNKYGAALELTELNDKRFTYTRMGKD NNGKEIKVFVEHEPYEGDFTPDFTF >gi|307679266|gb|GL456461.1| GENE 46 43263 - 44228 1110 321 aa, chain + ## HITS:1 COG:no KEGG:EF0375 NR:ns ## KEGG: EF0375 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 321 1 321 321 578 98.0 1e-164 MKKKVLSSITLVTLSTLLIAGYASPAFAGHAANPNSATANLGKHQNNGQTRGDKATKILS GTDWQGTRVYDAAGNDLTAENTNFIGLAKYDGETDFYEFFDKNTGETRGDEGTFFVTGDG TKRILISRTQNYQAVVDLTEVSKDKFTYKRLGKDKLGNDVEVYVEHIPYHGKKLAFTNGR EALTNQTGKIVTNKSGDKILGTTLWNGTKVVDKNGNDVTAANQNFISLAKFDPNTSKYEF FNLQKGETRGDFGYFQVVDNNKIRAHVSIGTNRYGAALELTELNNDRFTYTRMGKDNAGN DIQVFVEHEPYQGTYHPAFTF >gi|307679266|gb|GL456461.1| GENE 47 44447 - 45055 688 202 aa, chain + ## HITS:1 COG:no KEGG:EF0376 NR:ns ## KEGG: EF0376 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 202 1 202 347 388 100.0 1e-107 MKKKIVGTITLLALSALLVGGAGGALTAEAYVPQSVDNPNNLGDLPEYLRSVGIRQDEGL SEKDWAGTRVYDRNGNDLTDENQNLLHAIKFDATTSFYEFFDKETGESTGDEGTFFMTAG ITDVSRLVIISETKNYQGVYPLRTLYQDTFTYRQMGKDKNGNDIEVFVENKATSGPVYGR PQPYPNNRPRTLEFTNGRRAMT >gi|307679266|gb|GL456461.1| GENE 48 45155 - 45490 369 111 aa, chain + ## HITS:1 COG:no KEGG:EF0376 NR:ns ## KEGG: EF0376 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 111 237 347 347 207 99.0 1e-52 MDKDGNDVTSANQNFISLAKFDQDSSKYEFFNLQTGETRGDYGYFKVGNQNKFRAHVSIG TNRYGAVLELTELNDNRFTYTRMGKDNEGNDIQVYVEHEPYQGTFNPEFTF >gi|307679266|gb|GL456461.1| GENE 49 45664 - 46467 1018 267 aa, chain + ## HITS:1 COG:PA2498 KEGG:ns NR:ns ## COG: PA2498 COG0666 # Protein_GI_number: 15597694 # Func_class: R General function prediction only # Function: FOG: Ankyrin repeat # Organism: Pseudomonas aeruginosa # 75 263 19 204 210 147 44.0 1e-35 MNKKILMGLLSVVTIPLLAACQGGETPSAASKNSQTVTTQSSAKTESTSTTRSVAQTTSK EEVKEPMKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEI AKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKNATPDLNKHNRYGGNALIPAA EKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIK DNSGRTAMDYANQKGYTEISKILAQYN Prediction of potential genes in microbial genomes Time: Tue Jul 5 20:38:05 2011 Seq name: gi|307679265|gb|GL456462.1| Enterococcus faecalis TX0411 genomic scaffold Scfld197, whole genome shotgun sequence Length of sequence - 810 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 1/0.000 - CDS 55 - 243 112 ## COG3316 Transposase and inactivated derivatives 2 1 Op 2 1/0.000 - CDS 308 - 472 202 ## COG3316 Transposase and inactivated derivatives 3 1 Op 3 . - CDS 479 - 736 327 ## COG3316 Transposase and inactivated derivatives Predicted protein(s) >gi|307679265|gb|GL456462.1| GENE 1 55 - 243 112 62 aa, chain - ## HITS:1 COG:pli0028 KEGG:ns NR:ns ## COG: pli0028 COG3316 # Protein_GI_number: 18450311 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Listeria innocua # 1 62 165 226 226 121 98.0 3e-28 MIEQDHRPVKRRNKFYRSLRTASTTIKGMEAIRGLYKKTRKEGTLFGFSVCTEIKVLLGI PA >gi|307679265|gb|GL456462.1| GENE 2 308 - 472 202 54 aa, chain - ## HITS:1 COG:pli0028 KEGG:ns NR:ns ## COG: pli0028 COG3316 # Protein_GI_number: 18450311 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Listeria innocua # 1 48 89 136 226 93 97.0 1e-19 MYRAIDADGLTLDIWLRKKRDTQAAYAFLKRLVKQFDEPKVVVTDKAPLYYKCL >gi|307679265|gb|GL456462.1| GENE 3 479 - 736 327 85 aa, chain - ## HITS:1 COG:pli0012 KEGG:ns NR:ns ## COG: pli0012 COG3316 # Protein_GI_number: 18450298 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Listeria innocua # 1 85 1 85 226 153 98.0 7e-38 MSHFKGKQFQQDVIIVAVGYYLRYNLSYREVQEILYDRGINVSHTTIYRWVQEYGKLLYQ IWKKKNKKSFYSWKMDETYIKIKGK Prediction of potential genes in microbial genomes Time: Tue Jul 5 20:38:06 2011 Seq name: gi|307679264|gb|GL456463.1| Enterococcus faecalis TX0411 genomic scaffold Scfld205, whole genome shotgun sequence Length of sequence - 1252 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 5 - 64 8.4 1 1 Tu 1 . + CDS 99 - 536 271 ## gi|229546363|ref|ZP_04435088.1| hypothetical protein HMPREF0349_1580 + Term 544 - 605 20.3 2 2 Tu 1 . - CDS 569 - 841 148 ## gi|229548470|ref|ZP_04437195.1| hypothetical protein HMPREF0345_0681 - Prom 900 - 959 10.8 Predicted protein(s) >gi|307679264|gb|GL456463.1| GENE 1 99 - 536 271 145 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229546363|ref|ZP_04435088.1| ## NR: gi|229546363|ref|ZP_04435088.1| hypothetical protein HMPREF0349_1580 [Enterococcus faecalis TX1322] hypothetical protein HMPREF0345_0682 [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis CH188] predicted protein [Enterococcus faecalis X98] hypothetical protein HMPREF9509_02810 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9512_00787 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9504_01271 [Enterococcus faecalis TX0102] hypothetical protein HMPREF0345_0682 [Enterococcus faecalis ATCC 29200] hypothetical protein HMPREF0349_1580 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis CH188] predicted protein [Enterococcus faecalis X98] hypothetical protein HMPREF9509_02810 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9504_01271 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9512_00787 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9496_01860 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9501_01963 [Enterococcus faecalis TX0027] hypothetical protein HMPREF9503_00637 [Enterococcus faecalis TX0043] hypothetical protein HMPREF9508_00437 [Enterococcus faecalis TX0312] hypothetical protein HMPREF9513_00285 [Enterococcus faecalis TX0645] hypothetical protein HMPREF9511_01574 [Enterococcus faecalis TX0630] # 1 145 5 149 149 257 100.0 2e-67 MKFKSVLFLFLASIILFGFSQQTNAESQESNVTPSQESYAHDVLNEQLSSNLSTTDAIQQ RAAYAPSTWYYTTYRSYVGYPPATIYVSVENTAVKRRSHGYLTLISTGYAPGNWRTYAGT LYLQGGPYPIPSSLKATDLLVKQDN >gi|307679264|gb|GL456463.1| GENE 2 569 - 841 148 90 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229548470|ref|ZP_04437195.1| ## NR: gi|229548470|ref|ZP_04437195.1| hypothetical protein HMPREF0345_0681 [Enterococcus faecalis ATCC 29200] hypothetical protein HMPREF0345_0681 [Enterococcus faecalis ATCC 29200] # 1 89 1 89 108 130 100.0 5e-29 MGIFTNFSDFLEERRKKKHDKIRKKAEAMKRQGKSPVKKGWGTMVDTGSGGINKNPIDRV YDIGQQQKNLSSKSDEKNKFSEYQKIKKRS Prediction of potential genes in microbial genomes Time: Tue Jul 5 20:38:21 2011 Seq name: gi|307679263|gb|GL456464.1| Enterococcus faecalis TX0411 genomic scaffold Scfld206, whole genome shotgun sequence Length of sequence - 653 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 1 - 201 156 ## EFA0074 hypothetical protein 2 1 Op 2 . + CDS 195 - 419 235 ## EF_C0011 UvrC family transcriptional regulator 3 1 Op 3 . + CDS 480 - 651 160 ## EFA0075 hypothetical protein Predicted protein(s) >gi|307679263|gb|GL456464.1| GENE 1 1 - 201 156 66 aa, chain + ## HITS:1 COG:no KEGG:EFA0074 NR:ns ## KEGG: EFA0074 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 66 30 95 95 96 98.0 4e-19 YSANFQRYKNRVKKEENPLIIFESMTAKVEQVFLELAEEVIRTNPKTKQEFKEMIKEYSY KEDNKW >gi|307679263|gb|GL456464.1| GENE 2 195 - 419 235 74 aa, chain + ## HITS:1 COG:no KEGG:EF_C0011 NR:ns ## KEGG: EF_C0011 # Name: not_defined # Def: UvrC family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 64 1 64 69 64 45.0 2e-09 MVVRKTYDHWGIEISTWNKSNIVTFIDCDCGQLAKRELGKYNQFKCDSCNKEYKLYQGNY IAIDEKTNEVAQND >gi|307679263|gb|GL456464.1| GENE 3 480 - 651 160 57 aa, chain + ## HITS:1 COG:no KEGG:EFA0075 NR:ns ## KEGG: EFA0075 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 57 14 70 82 99 100.0 3e-20 MNFGYLNFGTKDAVLVIAIFIILILTVLFRWSALEFVFSSGAVGIAFFAGNMKQDKR Prediction of potential genes in microbial genomes Time: Tue Jul 5 20:38:27 2011 Seq name: gi|307679262|gb|GL456465.1| Enterococcus faecalis TX0411 genomic scaffold Scfld230, whole genome shotgun sequence Length of sequence - 1104 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 1104 981 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases Predicted protein(s) >gi|307679262|gb|GL456465.1| GENE 1 3 - 1104 981 367 aa, chain + ## HITS:1 COG:SPy1904 KEGG:ns NR:ns ## COG: SPy1904 COG0610 # Protein_GI_number: 15675717 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Streptococcus pyogenes M1 GAS # 15 359 482 810 992 165 34.0 1e-40 EYSSEQINRMIDQMESIKKESYLDPAVFEVDEHIQKVIHKMFRPDNAYTKFDFRNGRPTK SAILTTSSIDMAKKYYRAIKEMTKEPEWLTKEFPNQPIREGRTMEDPDFPRIAITYSLEE NSRDSSVQQEEMQKIIEEYNQYYDTAWSLADIERYNGDINNRLARKRAEFKQFGKQIDLV IVVDRLLTGFDAPTIQTLFVDRNLEYAGLIQAFSRTNRTYPDKTKGLIVTFRKPATMEKN VEDATKLYSEAKEESGLICPSYQESKKRFKQAYGKLKEVSSMESIDEHTPLEIRIEYVKA FQELNRAYESLVTYDDYNDDMVQSSTLNNQIQLLEEQIGVYETVKGSLIEEEPEKEGEDF STIEFYS Prediction of potential genes in microbial genomes Time: Tue Jul 5 20:38:29 2011 Seq name: gi|307679261|gb|GL456466.1| Enterococcus faecalis TX0411 genomic scaffold Scfld236, whole genome shotgun sequence Length of sequence - 9512 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 3, operones - 2 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 147 - 1058 722 ## EF1875 hypothetical protein 2 1 Op 2 . - CDS 1077 - 2081 785 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) 3 1 Op 3 . - CDS 2078 - 4201 1031 ## EF1877 hypothetical protein 4 1 Op 4 . - CDS 4206 - 6653 2138 ## EF1878 ATP/GTP-binding protein, putative 5 1 Op 5 . - CDS 6640 - 7029 112 ## EF1879 hypothetical protein - Prom 7251 - 7310 8.6 + Prom 7005 - 7064 11.8 6 2 Tu 1 . + CDS 7093 - 7821 410 ## EF1880 hypothetical protein 7 3 Op 1 . - CDS 7828 - 8655 327 ## EF1881 hypothetical protein 8 3 Op 2 . - CDS 8729 - 9232 710 ## EF1882 hypothetical protein 9 3 Op 3 . - CDS 9245 - 9466 236 ## EF1883 hypothetical protein Predicted protein(s) >gi|307679261|gb|GL456466.1| GENE 1 147 - 1058 722 303 aa, chain - ## HITS:1 COG:no KEGG:EF1875 NR:ns ## KEGG: EF1875 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 303 1 303 303 485 99.0 1e-135 MKIKIERIQKEKMSKKKKERTISVGKHRKMVLALWLLLSCSLAFGIYKNFTAIDQHTTHV KMVVKEKVINTSGVESFTKNFVKEYFSWKNNKEVIEKRMSNLGQYLTEEGLALSQDMVRV DIPTSSEVNSVKILDVEKRSKDFVVSFLVDQKITEGKKSEQISSAYRVKIFEDEKENHIV TSLPTMISKPGKAKYEVKQVESDSDIDAKTTQEITEFLETFFKLYPTASEKELEYYSENE SMSQVSSDLRFVEITNPIYLEKDGSVQVKIVVKYLNEIEKVTNSFQYNLLLNKEENWKII NGE >gi|307679261|gb|GL456466.1| GENE 2 1077 - 2081 785 334 aa, chain - ## HITS:1 COG:BS_yddH_2 KEGG:ns NR:ns ## COG: BS_yddH_2 COG0791 # Protein_GI_number: 16077564 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Bacillus subtilis # 215 332 5 122 124 122 48.0 8e-28 MNLKELSVISLTMLMLSFMGILMCVSLLFGEDSEGSGTSGISPGGNSVSEEVLKHRSMVE KYAKESDILDYVPILLAIIQVESGGTMEDVMQSSESAGLPPNSLSTEASIKQGCIYFASL VKSSKELGCDQDSIIQAYNYGGGYLNYVAKNGKKHSFTLAESFSKEKSGGQKVDYPNPIA IKENGGWRYNYGNMFYCLLVKQYLTTTQFDDKTVQGIFDEAFKYEGTAYVFGGSSPATGF DCSGLTQWCYAKVGLKLPRVAQDQYDVMTHIDLKDAKPGDLIFFHSTYDAGTYVTHVGIY AGENRMFHAGNPVGWTNLTESYWQQHLIGAGRYN >gi|307679261|gb|GL456466.1| GENE 3 2078 - 4201 1031 707 aa, chain - ## HITS:1 COG:no KEGG:EF1877 NR:ns ## KEGG: EF1877 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 707 1 707 707 1335 99.0 0 MKKKLFRIVGIVFISILTLIVLLSLVGTVAEATGLVDDTVESGNLYSKYSLNNYQLDFFV DSSWDWLPWNWGDGLGKSVMYGLYAITNFIWTVSLYLSNATGYVVQEAYKLDFISDTAES IGKNIQTLADITENGLQTSGFYFGFLLLMILALGVYVAYTGLLKRETTKAVRAVINFVMI FLLSGSFIAYAPTYITKINDFSSDVSEAALTLGTEIVVPNSESQGKDSVDLIRDSLFSIQ VQQPWLLLQFDDSNIEEIGEDRVNKILSVSPDENKGKDREEAVKAEIEDNDNANLSITKT MNRLGIVVFLVLFNIGISFFVFLLTGIMLFSQILFIIFAMFLPISFLLSMLPTYESLGKM AIIRLFNTIMMRAGVTLVITTAFSISTMFFNISATYPFFMVAFLQIVTFAGIYFKLGDIM SMFNLQSNDSQSMGRRVMRRPQMLMNRKLRQLNRNVGRTLAFGGAAAVGNKLAKEQSKPK FKPSDSSLRKNSRLPNDREVSSDSAKENPISNNKKQSRMNLTGRKIGKVLDTQALVKDKA KQVKDQVRNTPTNLKYILHKGLEKTKKAPKEFKRGLVQEKADREKLRDKQRQRRDEKMDE KRKNLGEVTDRHGKRRSNVSIKEDPKPQKDRILKNELPKRIVMVKPNSEVRRRLVKQNLV ARENNQLLSKKNSFQQVKQRSTLPKRANQKVQRIMKARPKPKSGDKK >gi|307679261|gb|GL456466.1| GENE 4 4206 - 6653 2138 815 aa, chain - ## HITS:1 COG:no KEGG:EF1878 NR:ns ## KEGG: EF1878 # Name: not_defined # Def: ATP/GTP-binding protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 815 1 815 815 1585 99.0 0 MYPIKYVENNLVFNQEGECFAYYELVPYNYSFLSPEQKYQVHDNFRQLIAQNREGKIHAL QIATESSIRATQERSKKEITGRLKEVAKQRIDLQTDTLVSMIGDSQIDYRFFIGFKLIAT DEEVNLKSLKKSFLSGLQEFVYGVNHHLMGDFVSLSNEEIRRYTKLEKLMESKLARRFKV RRVTPSDLTYLIEHIYGEKGTPFEEYEFQLPKKKLKSETLVKRYDLLHPSRCLIEENPRY LRMEHENHESYVAYLTINTIVGEMEFPSSELFYYQQQQFTFPIDTSMNVEIVTNKKALAT VRNKKKELKDLDNHAYQSDNETNSNVLDALDSVNELETTLDQSKESMYKLSYVVRVSAES VDELKRRCDEVFDFYDDTNVKLVRPFGDMMGLHEEFLPSSKRYMNDYIQYVTSDFLAGLG FGATQKLGELEGIYFGYNVDTGRNVYLKPALASQGVKGSVTNALAAAFLGSLGGGKSFSN NLLVYYAVLFGGQAVIVDPKGERGGWKENLPEIADEINILNLTSKPENQGLLDPYVIMKK KKDSESLAIDILTFLTGISSRDGEKFPVLRKAIRTVTQSDQRGLLQVINELRKENSPVAE NIADHIESFTDYDFAHLLFSDGSITQSISLDKQLNIIQVADLVLPDAETTFEEYTTMELL SVSMLIVISTFALDFIHSNREIFKIVDLDEAWSFLQVAQGKTLSNKLVRAGRAMNAGVYF VTQNSDDLLDERLKNNIGLKFAFRSTDIHEIKKTLEFFGLDQEDESNQKRLRDLENGQCL MQDLYGRVGVVQAHPVFEELFHAFDTRPPVQERME >gi|307679261|gb|GL456466.1| GENE 5 6640 - 7029 112 129 aa, chain - ## HITS:1 COG:no KEGG:EF1879 NR:ns ## KEGG: EF1879 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 129 1 129 129 235 100.0 5e-61 MKKIKSYTSIWAVEKVIYAINDFQLPFPVTFNQMAWFVLSLLFVIVFAHVPPLSMIEGAF LKYLGIPVVVTWFMSQKTFDGKKPLGFLRSFLSYHLRFKVTFAGKKVKEQKKRWDEPITL VRSVNYVPD >gi|307679261|gb|GL456466.1| GENE 6 7093 - 7821 410 242 aa, chain + ## HITS:1 COG:no KEGG:EF1880 NR:ns ## KEGG: EF1880 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 242 1 242 242 419 100.0 1e-116 MQNLITMASGTLNEVYSGTEIATLFAEYGAEFNSSVPFISTPFPNFTSKATAIQNNLQSF TEEQQFKIIKELCESVLAQNPANKDVAKILKLLLKNYGSVYSNDKIDRNIINETNTWLTA SSRAKEEFEKAIQSYDNSIYNRYTLDSIRLAFEFFMQDILKNSKSLENQPIEGELLPLLR KKGIPKEIINLVRLIIKGLISYQNENVKHSQTFTDLEVEFVIEQTSILMKLFAKIEKIEN ES >gi|307679261|gb|GL456466.1| GENE 7 7828 - 8655 327 275 aa, chain - ## HITS:1 COG:no KEGG:EF1881 NR:ns ## KEGG: EF1881 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 275 1 275 275 493 100.0 1e-138 MNIDEAKQLANYFSDGSPGYILEFNNLEWDLYTKKIVGFGIQERFGGSKGNSFKEFLVSE DISDHLKFKLIYSLNETMKQIASIRQFENPSSYKSPKMNPLVTLLIEEAYHKKDSARLLN GTKFSKEVNLEYIQQLPTRISKDIQNKDFDSVLTKSNTMIDEVLKYIIENTKGKSIDNNT VRSKDLRNQAFERLNIKIDKDMDKRIKALVGALNTLSDKILEMRNSQGDAHAQGSRRIVI NEEEAILTANSAMILCEYLFRKYEKRKRFSDAKES >gi|307679261|gb|GL456466.1| GENE 8 8729 - 9232 710 167 aa, chain - ## HITS:1 COG:no KEGG:EF1882 NR:ns ## KEGG: EF1882 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 167 1 167 167 302 99.0 4e-81 MEQMRVYIANLGRYNEGELVGAWFTPPVDFDEIKERIGLNNEYEEYAIHDYELPFEIDEY TPIEEINRLCGLAEELEGTPIGEVASEIQHAFFNSFEEMVEHLDNIVYYPDCNDMSDLAY YLIEETGALGEVPTHLQNYIDYEAYGRDLEIEGNYLVTSRGVFELCE >gi|307679261|gb|GL456466.1| GENE 9 9245 - 9466 236 73 aa, chain - ## HITS:1 COG:no KEGG:EF1883 NR:ns ## KEGG: EF1883 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 73 1 73 73 102 100.0 7e-21 MNFGQNLYQWFLTNAQSLVLLAIVVIGLFLGFKREFSKLIGFLVIALIAVGLVFNASGVK DVLLNLFNRIVGA Prediction of potential genes in microbial genomes Time: Tue Jul 5 20:39:09 2011 Seq name: gi|307679260|gb|GL456467.1| Enterococcus faecalis TX0411 genomic scaffold Scfld251, whole genome shotgun sequence Length of sequence - 2205 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 28 - 1743 817 ## Dred_0377 hypothetical protein + Term 1782 - 1822 3.1 - Term 1774 - 1807 2.0 2 2 Tu 1 . - CDS 1819 - 2154 229 ## gi|307295149|ref|ZP_07574989.1| helix-turn-helix protein Predicted protein(s) >gi|307679260|gb|GL456467.1| GENE 1 28 - 1743 817 571 aa, chain + ## HITS:1 COG:no KEGG:Dred_0377 NR:ns ## KEGG: Dred_0377 # Name: not_defined # Def: hypothetical protein # Organism: D.reducens # Pathway: not_defined # 17 356 121 492 679 85 25.0 6e-15 MSKDDSRYLSIEKVLSINLVHNSAFAIQKSIRYSENLEKYKIVFLLKEAITDYGKMVAVY EYLKKNIPGCDDNVNASNRMFFGGYKSDAVIIINEDNMLDITELPIDFTMTCSKNCQSDS GREYELVNETYFVKLIKNDDKEEMKQWFKDCLFDSSDMSFNEIYERLLTIDMNKLLKSSK NLRCLFHNDHNPSASIFTSKTGHSIFYCHSSNCDISENFIGVVMLILKKDSRVETFNWLL ENLDLYPTHFRKLKEESKVLFDTLESMKDKLFRTIRNYLEEMRRVYDVLLSDVNFFDDSK ESVTCILSGEQLAKKMSSYYGKTYDIDKCNKLLSLMTFIGLIKKLDDEDVPLKMLEYLNR LKEEKALGNFNHKRSNVYRLDVFNTTSVIQKLNEDILPLLEKFHFTYQYFSYEWVKICFN EKEAKRVFPQNSRSELSKEKQLILDEAHEVLQGLSWQGTYLMTEKELINTVCERLRNVRD NSVKNALIENRGYFVKQGFTLERASKDIKKLYNVKASSSFLVYLAKGAGIDEVIKELILS GVELVPIYQFTSVTRDDGRRVRNRRDPIILN >gi|307679260|gb|GL456467.1| GENE 2 1819 - 2154 229 111 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|307295149|ref|ZP_07574989.1| ## NR: gi|307295149|ref|ZP_07574989.1| helix-turn-helix protein [Enterococcus faecalis TX0411] helix-turn-helix protein [Enterococcus faecalis TX0411] # 1 111 18 128 128 194 100.0 3e-48 MKQKQYAKVIREKRKALGWTQKELAKKIFSTQQAVARWENSVTEPNLDSLTALSRALGTP VSHFLDNVDIDYEEEFLALYRSLSTEDAIRTIDYMKLLKRQENERNQLLKD Prediction of potential genes in microbial genomes Time: Tue Jul 5 20:39:29 2011 Seq name: gi|307679259|gb|GL456468.1| Enterococcus faecalis TX0411 genomic scaffold Scfld259, whole genome shotgun sequence Length of sequence - 15401 bp Number of predicted genes - 17, with homology - 17 Number of transcription units - 4, operones - 2 average op.length - 7.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 41 - 100 7.0 1 1 Op 1 . + CDS 223 - 2265 921 ## COG3711 Transcriptional antiterminator 2 1 Op 2 . + CDS 2276 - 2893 708 ## COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase 3 1 Op 3 13/0.000 + CDS 2940 - 3398 461 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 4 1 Op 4 10/0.000 + CDS 3446 - 3724 368 ## COG3414 Phosphotransferase system, galactitol-specific IIB component 5 1 Op 5 . + CDS 3749 - 5116 1106 ## COG3775 Phosphotransferase system, galactitol-specific IIC component 6 1 Op 6 . + CDS 5131 - 6276 1184 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 7 1 Op 7 . + CDS 6300 - 6791 521 ## LAC30SC_10580 hypothetical protein 8 1 Op 8 . + CDS 6788 - 7324 414 ## COG0406 Fructose-2,6-bisphosphatase + Term 7347 - 7385 3.0 - Term 7335 - 7371 3.2 9 2 Tu 1 . - CDS 7393 - 7596 100 ## gi|256617134|ref|ZP_05473980.1| predicted protein - Prom 7626 - 7685 2.4 10 3 Tu 1 . - CDS 7722 - 8456 413 ## COG2801 Transposase and inactivated derivatives - Prom 8687 - 8746 4.7 + Prom 8923 - 8982 6.5 11 4 Op 1 5/0.000 + CDS 9028 - 10986 701 ## COG3711 Transcriptional antiterminator 12 4 Op 2 8/0.000 + CDS 10979 - 11431 384 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 13 4 Op 3 7/0.000 + CDS 11433 - 11744 577 ## COG1445 Phosphotransferase system fructose-specific component IIB 14 4 Op 4 . + CDS 11762 - 12862 1006 ## COG1299 Phosphotransferase system, fructose-specific IIC component 15 4 Op 5 . + CDS 12862 - 13527 558 ## COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase 16 4 Op 6 1/0.000 + CDS 13598 - 14245 661 ## COG0176 Transaldolase 17 4 Op 7 . + CDS 14319 - 15128 911 ## COG0149 Triosephosphate isomerase + Term 15255 - 15297 7.1 Predicted protein(s) >gi|307679259|gb|GL456468.1| GENE 1 223 - 2265 921 680 aa, chain + ## HITS:1 COG:lin2817_1 KEGG:ns NR:ns ## COG: lin2817_1 COG3711 # Protein_GI_number: 16801878 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Listeria innocua # 1 523 3 525 536 218 27.0 4e-56 MNKRIREILKMIIKNPEMKLSALTSELDLTRRQINYAINQFNEDLEMKNIPTIQRSHSGD ITVPIEVIQMMSQLDQETVDEQATLALTEGERGALIVMTLITNIEYVSLDHLLDIVEVSK TTIMDDIKRTDALLRNYSLTIQYDRINGYQLAGSEHRILQLLSDLVKQCPIFRRETIRGK LVHGVTEEEIVHLVHNMEQMLHLSYSDESVDYLQTAARFLVSRGIKVSTKPDFFPGEVSN TPEYRMLTILVGETAWNLSKSYLEWFTLLFLTSNIFESKTTQNYDSDQDLRKLISQMVEN FQNQTLIMIDDREDFERRILSHLRPACFRIRFNLSLGVYSVDSLIKDSNHAILIDLMKEL IIPIENWLNKAFPNDELDLLSYYFGYQLSSHNKLNKQRPRAVVVCTNGVMVSKLVRANME KLFPEIHFLASLSVRDFYKFEVDYDLVFTTTPLNSAMMQFIIDPIMTYQEQISLRYRVLS DLGITKVDRALDELLKIVKKYATVNDQASLREELQYFLVKQDESTPLDNFQVLPSLTHYL RPNYVQVIDQEMTWEEAVSLACQPLLDHQIIDSRFINDCVNQIKQPGYAGYLGMRTCIPH TTVDKGVINDGVSIMVCQKPVIFPNGEAISLILPLSFFDLTKHLRAINQIADIAKDDSLI DQLVASADEKTIYQLLRQSS >gi|307679259|gb|GL456468.1| GENE 2 2276 - 2893 708 205 aa, chain + ## HITS:1 COG:all4771 KEGG:ns NR:ns ## COG: all4771 COG0800 # Protein_GI_number: 17232263 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-6-phosphogluconate aldolase # Organism: Nostoc sp. PCC 7120 # 37 202 42 206 210 100 35.0 2e-21 MKLADYPRFTVIMRGYTFDQADAILQAMQEFDHQFAVEMTMNTEGAIDHIRELNKRYGDT TYIGAGTVRTLEQAKACYEAGAKFLLGPHMFTEEMLAYANEKGVLAVPAAMTPSEVNQMF AQGADIVKVFPAAVVTPRFFKDIQAPLGKLPLMGVGGISKENAKEFFENGASYLGLGSGM FNKQDIEELNVKNLAQSMKELLAAI >gi|307679259|gb|GL456468.1| GENE 3 2940 - 3398 461 152 aa, chain + ## HITS:1 COG:BH0192 KEGG:ns NR:ns ## COG: BH0192 COG1762 # Protein_GI_number: 15612755 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Bacillus halodurans # 2 147 3 148 160 94 31.0 1e-19 MELYLNEELVFRNVEASTDSEVLAYLAGELYQKGYVKEEYIQAIQDREKEYPTGLPSTPP GIAIPHANYEMVNKTTLAIATLKEPVLFHNMEDNKAQLPIQIVIMMAIGEPHGQVEMLQK IVGIIQDEPLRQEMIDARNDTELLALLKKAVF >gi|307679259|gb|GL456468.1| GENE 4 3446 - 3724 368 92 aa, chain + ## HITS:1 COG:STM3783 KEGG:ns NR:ns ## COG: STM3783 COG3414 # Protein_GI_number: 16767067 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIB component # Organism: Salmonella typhimurium LT2 # 2 92 3 92 95 73 42.0 1e-13 MKRILVACGNGIATSTVVATKVKEYLQEHGVEVATTQTKLMEVPGKVEGYDLLVTTGQFD GQTGNVPVVKGMPILTGIGADKTMEEILNLLK >gi|307679259|gb|GL456468.1| GENE 5 3749 - 5116 1106 455 aa, chain + ## HITS:1 COG:Z4877 KEGG:ns NR:ns ## COG: Z4877 COG3775 # Protein_GI_number: 15804015 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIC component # Organism: Escherichia coli O157:H7 EDL933 # 4 435 18 453 462 310 39.0 3e-84 MKIIMNVFNFFIDAGPTVMLPVIITIIGLIFGLKITRAFKSGLTLGIGFAGIKLILDFMT TNVGPAAKAMVERTGVKLDALDVGWGSIAAVTWASPIIPILIFAILLVNIVLLVLKRTHT LDVDIWNYHHMAIVGVMVYFVTKNVFLGVGASVVMAIVTFKISDWSQPMVESFFGIPGVS LPTVSALSSLVIAWPLNWLLDRIPLFRKSKFTIKDAQKYLGFFGDSMIMGLVIGMVIGAL AGYDIKAVLQLGVSMSAVLVLIPKMTSLFMEGLMPISDAAQKWSQEKFKGTRLFIGLDAA VVVGNPDVITTALIIIPLTIAMALVLPGNRVLPFADLAVVPFRVAMVVALTRGNLLKNIV IGLVITASLLWCGSATSPMLTAIAKSVGIDLGTSSMLISSFAATSMIQSYLVFIAFAYKP IIGIPVLLLVLAGVWYYFDGVKKVNREMNEPVEAQ >gi|307679259|gb|GL456468.1| GENE 6 5131 - 6276 1184 381 aa, chain + ## HITS:1 COG:SMb20510 KEGG:ns NR:ns ## COG: SMb20510 COG4948 # Protein_GI_number: 16264240 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Sinorhizobium meliloti # 1 381 1 382 382 455 55.0 1e-128 MKISDITVYKVKPRWIFVKISTDEGIDGWGEMISGTKTETVVAGAYEIGNRLIGRNPFEI ERLFQEMHRSFFRGGPINGTIVSGLEMALWDIKGKAFNVPVYELLGGAARDNIKVYSWIG GDRPSEVAEQAQDRFDRGFTAVKMNATEELHYIDSYKKVDEVVERVASIRERFGDAMDIG VDFHGRVHKPMAKVLAKALEPFHPMFLEEVVLPENEEHYKEVADAVAVPLATGERLYTRW QFKNIFKQGAIDIIQPDVALCGGILETRKIAAMAEAHDMAVAPHAPYGPVALAATLQVDS CTPNVFIQEQSLGIHYNKGFDLLDFVKNKEVFQYKDGYVDLPSKPGLGLEMDEDRIKEIS QEGLVWTNPQWKNYDGTIAEW >gi|307679259|gb|GL456468.1| GENE 7 6300 - 6791 521 163 aa, chain + ## HITS:1 COG:no KEGG:LAC30SC_10580 NR:ns ## KEGG: LAC30SC_10580 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 146 1 148 151 97 38.0 1e-19 MAEALVIAGFLGLLVVLQVKDQKKIIVAAQTSWIRMGLSIALTVAILVIFWPSNLADQIK LGAFAAIILINGFLKEGLSQEGVVKLGVLNGEFARYPQIQIEELAGGNSFVSFYKSKNNS FSLVFGKSQAEMVAALQQLATDSELVLGEMADEKRPLAKGSAR >gi|307679259|gb|GL456468.1| GENE 8 6788 - 7324 414 178 aa, chain + ## HITS:1 COG:ML1452 KEGG:ns NR:ns ## COG: ML1452 COG0406 # Protein_GI_number: 15827761 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Mycobacterium leprae # 6 148 10 166 224 80 35.0 2e-15 MIYVARHGQTQYNVDGKICGHADIELTEVGYAQAEELAQLVSDLEQPITKIYVSPLRRAQ ETARIINEKVSVPIEVEPRLIEMDFGQYDGLPIETPEFQKVRVEFSLPLPDGESIMDVAG RVYPLLAELEQSDEDVLLVCHNALIRVIDNYFHGKTMIDFLKFNVDNTQLLRYERKRY >gi|307679259|gb|GL456468.1| GENE 9 7393 - 7596 100 67 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256617134|ref|ZP_05473980.1| ## NR: gi|256617134|ref|ZP_05473980.1| predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis CH188] conserved domain protein [Enterococcus faecalis TX0411] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis CH188] conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX4000] conserved domain protein [Enterococcus faecalis TX2141] conserved domain protein [Enterococcus faecalis TX0630] # 1 67 44 110 110 133 100.0 4e-30 MRRSKHSILLVDEHKFDSPHFYKIADFADSHSVITNTLPTEDYQKRIDDGITDFIWLNPK LRSQPNE >gi|307679259|gb|GL456468.1| GENE 10 7722 - 8456 413 244 aa, chain - ## HITS:1 COG:AGc3822 KEGG:ns NR:ns ## COG: AGc3822 COG2801 # Protein_GI_number: 15889390 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 243 1 250 512 149 37.0 4e-36 MFSHEERVKAIQLFLKYDCSYAATIRKLGYPSVGALRQWYKEYLVSGELHQELRKKSKYS EEQKRVAVNHYFEYGQCYARTIRMLGYPNKGSLRQWCEELAPGARKLRKSAVKLTKDQKE DVLKKFYKPQTNRKGLAEAEGISRVALYQWKATYLGKDFPLPMTSKNQGKQKELLLKEVE ELQEQVHQLQLEKALLEGAAELLKKGKGINLLRLSNQEKTLLIDALRNQFNLKDLLQQLQ LSKI >gi|307679259|gb|GL456468.1| GENE 11 9028 - 10986 701 652 aa, chain + ## HITS:1 COG:BH3853 KEGG:ns NR:ns ## COG: BH3853 COG3711 # Protein_GI_number: 15616415 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus halodurans # 4 493 3 496 700 147 24.0 9e-35 MHEISKRQHKLLRLLLEQKDFLPVNHFSKILSISDRTLYKDIDELNKALKKRKIEILKRQ GKGIFLSKSDLSNDEILKIFGEASTQIDFNQLPLERQIKMAEYLLLRNKKVSYQLLSDEF LVSRTSISNDLDQIQTVIEGSSVTIRSDNNGTKVNGNESEIQKAIKQYAYFIIDKSDLTN SYRVQFPSLLFSFLPKDIIKKVSGLLQTNDHFNIDKLSDDHFQSLVLSISIFVLRLQEGF HIEYQDNFLFENVESLKTFFLANELVENLELDNSIKLDSNDFEYFNRQLVAHGFEPRLRD LAIQKEYDAVVRKMIQKMSDSIQVDLTRDEKLYMNILYHLVSMIYRSKLNVPVSNPLLEE IKREYSVLYSTTWLILAGIEKELDIRLTDDEVAFMMIHFQGAIDRLSANRKILIVCPTGI GTSELIANRLKRVFSPQDIVEVVSLRTLYKRDLNKIDLVISSVQLEKIDVPVTYVSPLMS KQDLKKVSATYLDLFYEEEVNDQPFEHLGKIIDSDLIFLNETVATKEQCIKRITQKLLQN DFVTDSFEQAIWDREKLGVTDLPIGAAIPHPSPSTVKESKLVIMTLVKPIRWNFRMINTV LMICVAEKDLKHIKGILSEIYRIVETKKNIDRFIFSKDEEEIVKVLGGQTID >gi|307679259|gb|GL456468.1| GENE 12 10979 - 11431 384 150 aa, chain + ## HITS:1 COG:lin0446 KEGG:ns NR:ns ## COG: lin0446 COG1762 # Protein_GI_number: 16799523 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Listeria innocua # 1 137 6 144 154 88 36.0 6e-18 MIDEGLIVLDSALTNKKSIIHYLSEKAKEFGYLKNSANYIKAVNKREEEFSTAIGYDVSI PHGKSKEVINPFICFLRTNQPIQWDTNGNTVELVFMLGIPEENKTTFHLKVLAEISKKLL DEGFRNDLLTGSKESILDSLYQVEKKIGGI >gi|307679259|gb|GL456468.1| GENE 13 11433 - 11744 577 103 aa, chain + ## HITS:1 COG:STM4113 KEGG:ns NR:ns ## COG: STM4113 COG1445 # Protein_GI_number: 16767378 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system fructose-specific component IIB # Organism: Salmonella typhimurium LT2 # 2 95 3 96 106 88 48.0 2e-18 MKIVGVSACPTGVAHTYMAQEALEKEGKKRGHEIKIETQGSIGIENEVTEEEAEEADVVI LAVSVFIENEERFEDKLVLNADVNDAISYPAKVLDAAEKLVNG >gi|307679259|gb|GL456468.1| GENE 14 11762 - 12862 1006 366 aa, chain + ## HITS:1 COG:BS_yjdD_2 KEGG:ns NR:ns ## COG: BS_yjdD_2 COG1299 # Protein_GI_number: 16078266 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Bacillus subtilis # 10 348 8 355 367 225 44.0 1e-58 MNIKATLKEVQKSFLSGVSFMMPAVVAGGIMLAISLATGEKSDTGVVVTNELMQNINLLG KAAFAMMIPILGGYIAYSIAGKPGLAPGMILGFLANNPVTVNDVEVKSGFLGAMLLGVAA GYLVKWMKKWKVSKTIKTILPILIIPTISVFILGLIYIYVVATPLAFLMNGLTSIMSSLN GSSAILLAVFIGLFGEVDMGGPITKSVSMFTLALMNEGIYEPNGMFRIAVAIPPIGIFLA TLFFKKKFTEGDRDAAVAAGIMGCIGITEGAIPFVVSDMKRILPSTMIGTAVGCVIGAIG NVKCYVPHGGFVVLPVVDNKLWFIAAIIIGSLVTALILGFLKPALEETLAKKKNKSQVAD LTKEKA >gi|307679259|gb|GL456468.1| GENE 15 12862 - 13527 558 221 aa, chain + ## HITS:1 COG:all4771 KEGG:ns NR:ns ## COG: all4771 COG0800 # Protein_GI_number: 17232263 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-6-phosphogluconate aldolase # Organism: Nostoc sp. PCC 7120 # 9 211 10 206 210 117 32.0 2e-26 MKLEMNDFIEKNKVIAICRGTYGEKLINLVSALNDGGVKLVEVTFDQGDPECLTKTPKAI ASLVKEFGNEVKIGAGTVLSIEQVEAAHQAGAEYIISPNTNSSVIKRTKELDMVSMPGAL TPSEIISANEAGADFVKVFPVRALGIGYIKDILGPINHIKLVATAGVTPDNLQDYLDLGF SGAGISGYLTDKRLIDTGDFATITKHALEMMSIVRENNVSN >gi|307679259|gb|GL456468.1| GENE 16 13598 - 14245 661 215 aa, chain + ## HITS:1 COG:lin0361 KEGG:ns NR:ns ## COG: lin0361 COG0176 # Protein_GI_number: 16799438 # Func_class: G Carbohydrate transport and metabolism # Function: Transaldolase # Organism: Listeria innocua # 1 215 1 215 218 341 80.0 7e-94 MKFFLDTANVDEIKRINELGLVDGVTTNPTIIAKEGRDFEEVIKEICSLVDGPVSAEVTG SQAEEMIAEAEVLAKWARNVVVKIPMTEQGLKAVNTLSKKGIKTNVTLVFTVAQGLMAAK AGATYISPFLGRLDDIGTDSMALIKNLRKVLDNYGYKAEIISASVRGLEHVEKVAELGAD IATIPGNLFPKLWSHPLTDKGIEQFEKDWVAFSNR >gi|307679259|gb|GL456468.1| GENE 17 14319 - 15128 911 269 aa, chain + ## HITS:1 COG:lin0364 KEGG:ns NR:ns ## COG: lin0364 COG0149 # Protein_GI_number: 16799441 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Listeria innocua # 4 268 2 253 254 168 35.0 9e-42 MEQRKPIVIMNWSMRQNLISEAEEYAVDVLNHQSENHKVEVVLLPSMGTIHQVSKVLTGS QFAFGAQNMAEIDQGELSGEFSIQSLVDMHGKFVELGHWERRKLYNETDETINKKVKLAL AYDISPIVCIGEIEEKDANNVIDEIKNPNYVQELKEELFLRIFNALYQIDRDKLKKIVIA YTPAWAVGKTKAASAPHISRAVAIIRNSLTELFGKDADNIRVVYGGTVSPENTKTMLDLA DLDGVLLGRFGSDPERLQQTIEVVEQIRC Prediction of potential genes in microbial genomes Time: Tue Jul 5 20:39:38 2011 Seq name: gi|307679258|gb|GL456469.1| Enterococcus faecalis TX0411 genomic scaffold Scfld349, whole genome shotgun sequence Length of sequence - 552 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 550 707 ## EF0146 surface exclusion protein, putative Predicted protein(s) >gi|307679258|gb|GL456469.1| GENE 1 1 - 550 707 183 aa, chain + ## HITS:1 COG:no KEGG:EF0146 NR:ns ## KEGG: EF0146 # Name: not_defined # Def: surface exclusion protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 183 170 352 901 171 96.0 2e-41 DEKAKETNAAKVQNDKDQQAVTAAKQEQAKLEELAKNAEAEKAKAEKEQAAKEAELANKQ KEEAKAKDQKTKDDQAVADQQTVVTTSQEKVTDAKADTAAKQADLTAKENALKDKQAATK QAQNTLDNSKEELKGHKGINLPANFTPDYYKKLSEQEKQAMEKEALALNKVFPENQADAA KAT Prediction of potential genes in microbial genomes Time: Tue Jul 5 20:40:43 2011 Seq name: gi|307679257|gb|GL456470.1| Enterococcus faecalis TX0411 genomic scaffold Scfld357, whole genome shotgun sequence Length of sequence - 209158 bp Number of predicted genes - 224, with homology - 206 Number of transcription units - 95, operones - 57 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 936 - 995 6.3 1 1 Op 1 . + CDS 1182 - 1886 209 ## PROTEIN SUPPORTED gi|163764767|ref|ZP_02171821.1| ribosomal protein L15 2 1 Op 2 12/0.000 + CDS 1900 - 2958 1035 ## COG0451 Nucleoside-diphosphate-sugar epimerases 3 1 Op 3 . + CDS 2960 - 3940 901 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 4 1 Op 4 . + CDS 3956 - 5350 575 ## EF2169 hypothetical protein 5 1 Op 5 . + CDS 5353 - 6177 562 ## COG3475 LPS biosynthesis protein 6 1 Op 6 . + CDS 6200 - 7117 559 ## Avi_3137 hypothetical protein 7 1 Op 7 . + CDS 7188 - 8609 876 ## EF2166 hypothetical protein + Prom 8628 - 8687 8.1 8 2 Op 1 . + CDS 8711 - 9676 973 ## COG0451 Nucleoside-diphosphate-sugar epimerases 9 2 Op 2 . + CDS 9673 - 11484 1033 ## EF2164 hypothetical protein + Term 11502 - 11539 3.3 + Prom 11488 - 11547 4.4 10 3 Op 1 . + CDS 11593 - 12339 729 ## COG0584 Glycerophosphoryl diester phosphodiesterase 11 3 Op 2 2/0.067 + CDS 12340 - 13269 873 ## COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase 12 3 Op 3 . + CDS 13273 - 14514 580 ## PROTEIN SUPPORTED gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 + Term 14528 - 14576 8.7 + Prom 14636 - 14695 7.6 13 4 Op 1 5/0.000 + CDS 14717 - 15100 460 ## COG0789 Predicted transcriptional regulators 14 4 Op 2 . + CDS 15143 - 16483 1464 ## COG0174 Glutamine synthetase + Term 16515 - 16566 14.5 + Prom 16663 - 16722 7.8 15 5 Tu 1 . + CDS 16783 - 20472 3970 ## COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit + Term 20489 - 20528 7.1 + Prom 20581 - 20640 6.4 16 6 Op 1 7/0.000 + CDS 20669 - 21553 814 ## COG1624 Uncharacterized conserved protein 17 6 Op 2 6/0.000 + CDS 21550 - 22713 1397 ## COG4856 Uncharacterized protein conserved in bacteria 18 6 Op 3 . + CDS 22706 - 24061 1848 ## COG1109 Phosphomannomutase + Term 24072 - 24127 13.1 + Prom 24188 - 24247 7.8 19 7 Op 1 3/0.000 + CDS 24291 - 24842 420 ## COG4720 Predicted membrane protein + Prom 24851 - 24910 1.9 20 7 Op 2 34/0.000 + CDS 24943 - 26649 278 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 21 7 Op 3 . + CDS 26646 - 27479 925 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters + Term 27532 - 27583 6.1 22 8 Tu 1 . + CDS 27922 - 29730 2192 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains + Term 29779 - 29832 15.1 + Prom 29867 - 29926 7.7 23 9 Op 1 . + CDS 29999 - 31279 1418 ## COG2348 Uncharacterized protein involved in methicillin resistance 24 9 Op 2 . + CDS 31328 - 31618 456 ## EF2149 hypothetical protein + Term 31675 - 31703 -0.9 25 9 Op 3 . + CDS 31794 - 32759 960 ## EF2148 hypothetical protein + Term 32764 - 32804 8.1 - Term 32752 - 32792 8.1 26 10 Op 1 . - CDS 32847 - 33026 171 ## EF2147 hypothetical protein - Prom 33057 - 33116 6.2 27 10 Op 2 . - CDS 33239 - 34729 760 ## EF2146 hypothetical protein - Prom 34759 - 34818 9.8 - TRNA 34887 - 34959 79.5 # Thr GGT 0 0 - Term 34831 - 34882 13.3 28 11 Tu 1 . - CDS 34971 - 35177 90 ## EF2083 hypothetical protein - Prom 35316 - 35375 3.2 + Prom 35547 - 35606 2.4 29 12 Tu 1 . + CDS 35674 - 35781 60 ## - Term 35734 - 35787 -0.8 30 13 Tu 1 . - CDS 35901 - 36038 69 ## - Prom 36115 - 36174 6.6 + Prom 36054 - 36113 3.2 31 14 Op 1 32/0.000 + CDS 36143 - 37222 1185 ## COG1135 ABC-type metal ion transport system, ATPase component 32 14 Op 2 22/0.000 + CDS 37230 - 37910 920 ## COG2011 ABC-type metal ion transport system, permease component 33 14 Op 3 . + CDS 37930 - 38763 1109 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen 34 14 Op 4 . + CDS 38778 - 39971 1694 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase + Term 39981 - 40023 4.0 + Prom 40007 - 40066 3.3 35 15 Op 1 . + CDS 40086 - 40193 116 ## 36 15 Op 2 . + CDS 40341 - 41879 1669 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains + Term 41881 - 41938 17.0 - Term 41868 - 41925 17.0 37 16 Op 1 12/0.000 - CDS 41934 - 42860 1327 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin 38 16 Op 2 42/0.000 - CDS 42847 - 43716 932 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 39 16 Op 3 . - CDS 43713 - 44462 189 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 44489 - 44548 7.6 + Prom 44442 - 44501 7.0 40 17 Tu 1 . + CDS 44675 - 45649 1225 ## COG0462 Phosphoribosylpyrophosphate synthetase + Term 45666 - 45717 9.4 + Prom 45721 - 45780 3.9 41 18 Op 1 . + CDS 45806 - 46951 1184 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 42 18 Op 2 . + CDS 47019 - 47363 400 ## EF2071 hypothetical protein + Term 47370 - 47426 11.3 + Prom 47464 - 47523 5.9 43 19 Tu 1 . + CDS 47589 - 48713 1391 ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain + Term 48767 - 48809 -0.1 44 20 Op 1 3/0.000 - CDS 48893 - 50131 1146 ## COG0477 Permeases of the major facilitator superfamily 45 20 Op 2 . - CDS 50148 - 50663 569 ## COG1881 Phospholipid-binding protein - Prom 50698 - 50757 8.3 + Prom 50703 - 50762 6.4 46 21 Op 1 . + CDS 50796 - 51365 743 ## COG1309 Transcriptional regulator + Prom 51380 - 51439 4.7 47 21 Op 2 . + CDS 51463 - 51828 316 ## COG4699 Uncharacterized protein conserved in bacteria 48 21 Op 3 . + CDS 51740 - 54040 2221 ## COG0550 Topoisomerase IA + Prom 54046 - 54105 3.3 49 21 Op 4 . + CDS 54125 - 54988 789 ## COG3708 Uncharacterized protein conserved in bacteria 50 22 Tu 1 . - CDS 54928 - 55059 60 ## - Prom 55306 - 55365 12.0 + Prom 55244 - 55303 12.5 51 23 Op 1 . + CDS 55324 - 55764 102 ## SmuNN2025_0700 hypothetical protein 52 23 Op 2 . + CDS 55761 - 55859 73 ## + Term 55900 - 55934 0.4 + Prom 55868 - 55927 5.1 53 24 Op 1 . + CDS 55955 - 56017 65 ## 54 24 Op 2 31/0.000 + CDS 56019 - 57437 1560 ## COG1271 Cytochrome bd-type quinol oxidase, subunit 1 55 24 Op 3 5/0.000 + CDS 57434 - 58447 993 ## COG1294 Cytochrome bd-type quinol oxidase, subunit 2 56 24 Op 4 14/0.000 + CDS 58452 - 60185 173 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 57 24 Op 5 . + CDS 60185 - 61948 234 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P + Term 61954 - 61999 6.5 - Term 61936 - 61993 9.6 58 25 Tu 1 . - CDS 62028 - 63008 993 ## COG0142 Geranylgeranyl pyrophosphate synthase 59 26 Op 1 . + CDS 63130 - 64035 681 ## COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase 60 26 Op 2 . + CDS 64064 - 65275 1558 ## COG1252 NADH dehydrogenase, FAD-containing subunit + Term 65338 - 65391 8.4 + Prom 65509 - 65568 4.8 61 27 Op 1 3/0.000 + CDS 65589 - 68012 2696 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins + Term 68020 - 68066 9.5 + Prom 68037 - 68096 13.3 62 27 Op 2 1/0.133 + CDS 68143 - 68844 874 ## COG2188 Transcriptional regulators + Term 68854 - 68907 12.1 + Prom 68879 - 68938 8.2 63 28 Op 1 36/0.000 + CDS 68962 - 69711 988 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component 64 28 Op 2 . + CDS 69701 - 71530 1583 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Term 71531 - 71585 11.6 + Prom 71564 - 71623 6.4 65 29 Tu 1 . + CDS 71654 - 72727 1058 ## COG0820 Predicted Fe-S-cluster redox enzyme + Term 72732 - 72785 8.0 + Prom 72853 - 72912 7.5 66 30 Tu 1 . + CDS 73017 - 74345 1311 ## COG0531 Amino acid transporters + Term 74501 - 74539 6.2 + Prom 74384 - 74443 6.6 67 31 Op 1 24/0.000 + CDS 74586 - 75554 833 ## COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 68 31 Op 2 6/0.000 + CDS 75511 - 76557 719 ## COG1459 Type II secretory pathway, component PulF 69 31 Op 3 . + CDS 76557 - 76832 376 ## COG4537 Competence protein ComGC 70 31 Op 4 . + CDS 76829 - 77272 190 ## MPTP_1391 late competence protein ComGD, access of DNA to ComEA 71 32 Tu 1 . - CDS 77300 - 78448 651 ## COG0582 Integrase - Term 78465 - 78502 1.1 72 33 Op 1 . - CDS 78523 - 78852 419 ## LCABL_12950 prophage Lp2 protein 7 73 33 Op 2 . - CDS 78867 - 79631 548 ## EF2795 LysM domain-containing protein - Prom 79651 - 79710 6.2 74 34 Op 1 . - CDS 79749 - 80387 275 ## EF2041 hypothetical protein 75 34 Op 2 . - CDS 80400 - 80744 347 ## COG1396 Predicted transcriptional regulators - Prom 80767 - 80826 9.2 + Prom 80917 - 80976 7.8 76 35 Op 1 . + CDS 81035 - 81226 214 ## EF2039 hypothetical protein 77 35 Op 2 . + CDS 81238 - 81549 208 ## EF2038 hypothetical protein 78 35 Op 3 . + CDS 81588 - 81680 114 ## + Prom 81682 - 81741 1.7 79 36 Tu 1 . + CDS 81788 - 82309 391 ## EF2037 antirepressor, putative + Term 82354 - 82397 -0.3 - Term 82318 - 82348 1.3 80 37 Tu 1 . - CDS 82349 - 82531 183 ## EF2036 hypothetical protein - Prom 82567 - 82626 7.0 + Prom 82313 - 82372 8.0 81 38 Op 1 . + CDS 82584 - 82778 218 ## gi|229545380|ref|ZP_04434105.1| hypothetical protein HMPREF0349_0597 82 38 Op 2 . + CDS 82769 - 82954 293 ## gi|229545381|ref|ZP_04434106.1| hypothetical protein HMPREF0349_0598 83 38 Op 3 . + CDS 82998 - 83321 392 ## gi|229545382|ref|ZP_04434107.1| hypothetical protein HMPREF0349_0599 84 38 Op 4 . + CDS 83321 - 83548 251 ## EF2843 hypothetical protein 85 38 Op 5 . + CDS 83548 - 83649 164 ## 86 38 Op 6 3/0.000 + CDS 83646 - 84590 967 ## COG5377 Phage-related protein, predicted endonuclease 87 38 Op 7 . + CDS 84590 - 85483 1029 ## COG3723 Recombinational DNA repair protein (RecE pathway) + Term 85487 - 85511 -1.0 88 38 Op 8 . + CDS 85520 - 86521 712 ## EF2130 DnaD domain-containing protein 89 38 Op 9 . + CDS 86525 - 86827 399 ## gi|229545388|ref|ZP_04434113.1| hypothetical protein HMPREF0349_0605 90 38 Op 10 . + CDS 86828 - 87127 437 ## SH1788 hypothetical protein 91 38 Op 11 . + CDS 87145 - 87570 358 ## COG4570 Holliday junction resolvase 92 38 Op 12 . + CDS 87630 - 87746 81 ## + Term 87855 - 87893 0.4 + Prom 88320 - 88379 5.3 93 39 Tu 1 . + CDS 88477 - 88893 307 ## EF2024 ArpU family transcriptional regulator + Term 88902 - 88938 -1.0 + Prom 88902 - 88961 2.2 94 40 Tu 1 . + CDS 89060 - 89194 59 ## EF2023 hypothetical protein + TRNA 89278 - 89349 63.7 # Trp CCA 0 0 + Prom 89798 - 89857 6.6 95 41 Op 1 . + CDS 89887 - 90120 137 ## EF2021 hypothetical protein + Prom 90184 - 90243 10.7 96 41 Op 2 . + CDS 90264 - 90842 239 ## Spico_0824 putative phage-related protein + Term 90845 - 90889 12.7 - Term 90837 - 90873 7.5 97 42 Tu 1 . - CDS 90880 - 91797 534 ## CMS_0812 putative phage-related protein - Prom 91820 - 91879 9.9 + Prom 91784 - 91843 10.3 98 43 Op 1 2/0.067 + CDS 92066 - 92869 849 ## COG5484 Uncharacterized conserved protein 99 43 Op 2 . + CDS 92856 - 94130 706 ## COG1783 Phage terminase large subunit 100 43 Op 3 . + CDS 94142 - 95629 1131 ## EF2016 portal protein 101 43 Op 4 . + CDS 95604 - 97361 1040 ## EF2015 minor head protein, putative 102 43 Op 5 . + CDS 97370 - 97579 167 ## gi|229545402|ref|ZP_04434127.1| hypothetical protein HMPREF0349_0619 103 43 Op 6 . + CDS 97620 - 97964 335 ## EF2013 hypothetical protein 104 43 Op 7 . + CDS 97969 - 98052 157 ## + Prom 98054 - 98113 3.6 105 44 Op 1 . + CDS 98182 - 98805 741 ## EF2012 hypothetical protein 106 44 Op 2 . + CDS 98819 - 99706 999 ## EF2011 hypothetical protein 107 44 Op 3 . + CDS 99735 - 99917 420 ## EF2010 hypothetical protein 108 44 Op 4 . + CDS 99931 - 100275 286 ## gi|229545407|ref|ZP_04434132.1| hypothetical protein HMPREF0349_0624 109 44 Op 5 . + CDS 100272 - 100640 629 ## PROTEIN SUPPORTED gi|229545408|ref|ZP_04434133.1| ribosomal protein L23 110 44 Op 6 . + CDS 100633 - 101031 391 ## EF2007 hypothetical protein 111 44 Op 7 . + CDS 101034 - 101408 266 ## EF2006 hypothetical protein 112 44 Op 8 . + CDS 101409 - 102257 1095 ## COG5492 Bacterial surface proteins containing Ig-like domains + Term 102269 - 102302 5.1 113 45 Tu 1 . + CDS 102310 - 102660 561 ## EF2004 hypothetical protein + Prom 102799 - 102858 2.8 114 46 Op 1 2/0.067 + CDS 102881 - 105805 2704 ## COG5412 Phage-related protein 115 46 Op 2 4/0.000 + CDS 105774 - 106529 441 ## COG4722 Phage-related protein 116 46 Op 3 . + CDS 106526 - 109318 2556 ## COG4926 Phage-related protein 117 46 Op 4 . + CDS 109337 - 110218 1027 ## EF2810 hypothetical protein 118 46 Op 5 . + CDS 110211 - 110807 790 ## MPTP_1474 hypothetical protein 119 46 Op 6 . + CDS 110804 - 111091 431 ## MPTP_1473 hypothetical protein 120 46 Op 7 . + CDS 111091 - 111582 608 ## gi|227519338|ref|ZP_03949387.1| hypothetical protein HMPREF0348_2321 121 46 Op 8 . + CDS 111596 - 111916 406 ## EF1995 hypothetical protein 122 46 Op 9 . + CDS 111918 - 112073 207 ## EF1994 hypothetical protein 123 46 Op 10 . + CDS 112108 - 112329 263 ## gi|227555456|ref|ZP_03985503.1| hypothetical protein HMPREF0346_2619 124 46 Op 11 . + CDS 112322 - 112555 338 ## COG5546 Small integral membrane protein 125 46 Op 12 . + CDS 112556 - 113797 1331 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) + Term 113885 - 113940 5.0 + Prom 114458 - 114517 9.5 126 47 Op 1 . + CDS 114634 - 114834 336 ## COG1278 Cold shock proteins + Term 114845 - 114890 8.7 + Prom 114836 - 114895 9.0 127 47 Op 2 . + CDS 114933 - 115178 218 ## EF1990 hypothetical protein + Term 115181 - 115218 -0.4 + TRNA 115791 - 115864 68.0 # Met CAT 0 0 + Prom 115792 - 115851 76.0 128 48 Tu 1 . + CDS 115894 - 116835 500 ## COG0276 Protoheme ferro-lyase (ferrochelatase) - Term 116927 - 116985 12.1 129 49 Tu 1 . - CDS 117133 - 117258 149 ## - Prom 117366 - 117425 7.0 + Prom 117542 - 117601 5.5 130 50 Op 1 . + CDS 117637 - 117963 171 ## EF1987 hypothetical protein 131 50 Op 2 . + CDS 117953 - 118387 370 ## COG4940 Competence protein ComGF 132 50 Op 3 . + CDS 118387 - 118740 319 ## EF1985 hypothetical protein + Term 118771 - 118819 0.3 + Prom 118767 - 118826 8.2 133 51 Op 1 7/0.000 + CDS 118905 - 119876 1014 ## COG0827 Adenine-specific DNA methylase 134 51 Op 2 . + CDS 119901 - 121088 1558 ## COG0282 Acetate kinase + Term 121098 - 121141 13.0 - Term 121132 - 121192 19.3 135 52 Tu 1 . - CDS 121200 - 121673 623 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins - Prom 121710 - 121769 8.9 - Term 121791 - 121832 9.2 136 53 Op 1 . - CDS 121851 - 122129 298 ## EF1980 hypothetical protein - Term 122137 - 122168 1.1 137 53 Op 2 . - CDS 122170 - 122373 105 ## - Prom 122393 - 122452 1.7 138 53 Op 3 . - CDS 122457 - 123734 1680 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase - Prom 123757 - 123816 4.2 + Prom 123705 - 123764 6.8 139 54 Op 1 . + CDS 123863 - 124540 777 ## COG2094 3-methyladenine DNA glycosylase 140 54 Op 2 . + CDS 124497 - 124982 687 ## EF1977 hypothetical protein 141 54 Op 3 9/0.000 + CDS 124998 - 125945 1600 ## PROTEIN SUPPORTED gi|227519318|ref|ZP_03949367.1| ribosomal protein L11 methyltransferase 142 54 Op 4 . + CDS 125947 - 126699 707 ## COG1385 Uncharacterized protein conserved in bacteria + Term 126710 - 126742 -0.0 + Prom 126800 - 126859 8.0 143 55 Op 1 7/0.000 + CDS 126914 - 129127 2600 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases 144 55 Op 2 . + CDS 129151 - 129597 532 ## COG1490 D-Tyr-tRNAtyr deacylase + Prom 129796 - 129855 4.4 145 56 Op 1 13/0.000 + CDS 129955 - 131256 1612 ## COG0124 Histidyl-tRNA synthetase 146 56 Op 2 . + CDS 131274 - 133043 2312 ## COG0173 Aspartyl-tRNA synthetase + Term 133062 - 133103 8.1 + Prom 133138 - 133197 5.1 147 57 Op 1 3/0.000 + CDS 133218 - 134033 746 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 148 57 Op 2 2/0.067 + CDS 134017 - 134523 651 ## COG4720 Predicted membrane protein 149 57 Op 3 . + CDS 134520 - 135089 764 ## COG4475 Uncharacterized protein conserved in bacteria + Prom 135131 - 135190 6.2 150 58 Tu 1 . + CDS 135232 - 136110 854 ## COG1284 Uncharacterized conserved protein + Term 136122 - 136169 11.0 + Prom 136338 - 136397 7.2 151 59 Op 1 5/0.000 + CDS 136530 - 137567 1029 ## COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain 152 59 Op 2 26/0.000 + CDS 137607 - 138608 1315 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase + Term 138656 - 138692 6.3 + Prom 138652 - 138711 3.1 153 59 Op 3 13/0.000 + CDS 138735 - 139928 1460 ## COG0126 3-phosphoglycerate kinase 154 59 Op 4 . + CDS 139977 - 140732 898 ## COG0149 Triosephosphate isomerase + Prom 140757 - 140816 5.1 155 60 Tu 1 . + CDS 140864 - 142162 1571 ## COG0148 Enolase + Term 142188 - 142227 3.2 + Prom 142361 - 142420 11.7 156 61 Op 1 . + CDS 142516 - 143340 566 ## EF1959 hypothetical protein 157 61 Op 2 . + CDS 143357 - 144718 1152 ## COG0232 dGTP triphosphohydrolase + Term 144906 - 144951 4.3 + Prom 145186 - 145245 7.3 158 62 Op 1 . + CDS 145289 - 145624 288 ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain 159 62 Op 2 3/0.000 + CDS 145560 - 148061 1935 ## COG3933 Transcriptional antiterminator + Term 148075 - 148109 3.2 160 62 Op 3 9/0.000 + CDS 148133 - 148552 494 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 161 62 Op 4 13/0.000 + CDS 148564 - 149034 574 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 162 62 Op 5 13/0.000 + CDS 149050 - 149841 999 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 163 62 Op 6 3/0.000 + CDS 149825 - 150655 816 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 164 62 Op 7 3/0.000 + CDS 150666 - 151742 991 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains 165 62 Op 8 . + CDS 151736 - 152740 1288 ## COG2222 Predicted phosphosugar isomerases 166 62 Op 9 . + CDS 152814 - 153164 467 ## COG4898 Uncharacterized protein conserved in bacteria + Term 153240 - 153293 17.2 167 63 Tu 1 . - CDS 153257 - 153616 305 ## COG5646 Uncharacterized conserved protein - Prom 153647 - 153706 5.4 - Term 153662 - 153718 4.2 168 64 Op 1 . - CDS 153767 - 153916 238 ## EF1947 hypothetical protein 169 64 Op 2 . - CDS 153919 - 154020 78 ## - Prom 154184 - 154243 7.0 + Prom 154038 - 154097 7.2 170 65 Tu 1 . + CDS 154125 - 155960 1294 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily + Term 155967 - 155998 3.1 - Term 155954 - 155985 3.1 171 66 Tu 1 . - CDS 155997 - 157178 1070 ## COG0477 Permeases of the major facilitator superfamily - Prom 157199 - 157258 5.0 172 67 Op 1 . - CDS 157288 - 157683 492 ## EF1941 hypothetical protein 173 67 Op 2 . - CDS 157755 - 158420 607 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - Prom 158517 - 158576 8.4 174 68 Tu 1 . + CDS 158509 - 159159 633 ## EF1939 hypothetical protein + Term 159237 - 159286 4.3 + Prom 159174 - 159233 9.3 175 69 Op 1 . + CDS 159477 - 162182 3422 ## COG0474 Cation transport ATPase + Term 162195 - 162240 8.3 176 69 Op 2 . + CDS 162252 - 162788 403 ## PROTEIN SUPPORTED gi|227385040|ref|ZP_03868434.1| acetyltransferase, ribosomal protein N-acetylase 177 69 Op 3 . + CDS 162858 - 163298 655 ## EF1936 hypothetical protein + Term 163444 - 163477 4.5 - Term 163482 - 163537 16.1 178 70 Op 1 . - CDS 163541 - 163702 207 ## EF1934 hypothetical protein 179 70 Op 2 . - CDS 163736 - 164092 417 ## EF1933 hypothetical protein - Prom 164171 - 164230 7.6 + Prom 164005 - 164064 10.5 180 71 Op 1 . + CDS 164272 - 165606 1238 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases 181 71 Op 2 . + CDS 165596 - 167062 1130 ## EF1931 hypothetical protein + Term 167069 - 167119 7.5 + Prom 167195 - 167254 8.1 182 72 Op 1 5/0.000 + CDS 167339 - 168844 1778 ## COG0554 Glycerol kinase 183 72 Op 2 4/0.000 + CDS 168865 - 170694 2081 ## COG0578 Glycerol-3-phosphate dehydrogenase 184 72 Op 3 . + CDS 170702 - 171421 1157 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) + Term 171447 - 171516 8.0 + Prom 171614 - 171673 9.9 185 73 Op 1 . + CDS 171694 - 172233 476 ## COG4915 5-bromo-4-chloroindolyl phosphate hydrolysis protein 186 73 Op 2 . + CDS 172226 - 173068 661 ## EF1925 hypothetical protein + Term 173280 - 173349 20.0 - Term 173120 - 173169 10.7 187 74 Op 1 . - CDS 173387 - 174895 752 ## EF1923 hypothetical protein - Prom 174915 - 174974 8.2 188 74 Op 2 . - CDS 175014 - 176924 1464 ## COG0524 Sugar kinases, ribokinase family - Prom 176957 - 177016 9.6 + Prom 176907 - 176966 7.6 189 75 Op 1 . + CDS 177107 - 178027 1045 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase 190 75 Op 2 . + CDS 178044 - 179417 1344 ## COG3069 C4-dicarboxylate transporter 191 75 Op 3 . + CDS 179429 - 179905 324 ## EF1919 acetyltransferase + Term 179928 - 179979 12.1 - Term 179915 - 179967 13.1 192 76 Tu 1 . - CDS 179996 - 181024 1301 ## COG2706 3-carboxymuconate cyclase - Prom 181075 - 181134 8.2 + Prom 181118 - 181177 2.9 193 77 Op 1 4/0.000 + CDS 181216 - 182469 267 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 + Term 182472 - 182537 13.3 + Prom 182476 - 182535 2.0 194 77 Op 2 . + CDS 182567 - 183148 689 ## COG0218 Predicted GTPase 195 78 Tu 1 . - CDS 183165 - 183317 236 ## - Prom 183338 - 183397 5.0 + Prom 183295 - 183354 10.0 196 79 Op 1 . + CDS 183495 - 183797 388 ## COG0759 Uncharacterized conserved protein 197 79 Op 2 . + CDS 183800 - 184681 1136 ## COG1940 Transcriptional regulator/sugar kinase + Term 184683 - 184732 11.4 - Term 184671 - 184720 11.4 198 80 Tu 1 . - CDS 184722 - 185333 619 ## COG4129 Predicted membrane protein - Prom 185422 - 185481 4.8 + Prom 185338 - 185397 6.2 199 81 Tu 1 . + CDS 185436 - 186395 971 ## COG4129 Predicted membrane protein + Term 186397 - 186448 7.1 + Prom 186437 - 186496 6.2 200 82 Tu 1 . + CDS 186522 - 187466 1060 ## EF1909 hypothetical protein + Term 187472 - 187518 5.7 + Prom 187469 - 187528 8.2 201 83 Tu 1 . + CDS 187621 - 188958 1586 ## COG0773 UDP-N-acetylmuramate-alanine ligase + Term 188977 - 189036 3.2 + Prom 189074 - 189133 6.6 202 84 Op 1 . + CDS 189156 - 189641 641 ## COG2030 Acyl dehydratase 203 84 Op 2 . + CDS 189634 - 190320 938 ## COG0670 Integral membrane protein, interacts with FtsH + Term 190373 - 190426 10.0 204 85 Tu 1 . - CDS 190510 - 192312 1290 ## COG0584 Glycerophosphoryl diester phosphodiesterase - Prom 192352 - 192411 4.2 - Term 192340 - 192393 5.5 205 86 Tu 1 . - CDS 192413 - 193012 720 ## COG0398 Uncharacterized conserved protein - Prom 193043 - 193102 8.1 - Term 193195 - 193236 -0.1 206 87 Tu 1 . - CDS 193243 - 193617 435 ## EF1902 glyoxylase family protein - Prom 193709 - 193768 8.2 + Prom 193694 - 193753 9.0 207 88 Tu 1 . + CDS 193814 - 195175 1493 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family + Term 195182 - 195224 7.0 + Prom 195195 - 195254 7.3 208 89 Op 1 30/0.000 + CDS 195283 - 195807 738 ## COG0806 RimM protein, required for 16S rRNA processing 209 89 Op 2 33/0.000 + CDS 195797 - 196537 731 ## COG0336 tRNA-(guanine-N1)-methyltransferase + Prom 196540 - 196599 5.3 210 89 Op 3 . + CDS 196633 - 197028 654 ## PROTEIN SUPPORTED gi|227519245|ref|ZP_03949294.1| 50S ribosomal protein L19 + Term 197063 - 197103 6.1 211 90 Op 1 . + CDS 197399 - 198061 340 ## EF1897 hypothetical protein + Term 198077 - 198115 4.5 212 90 Op 2 . + CDS 198141 - 201368 3266 ## COG4932 Predicted outer membrane protein + Term 201408 - 201451 5.1 213 91 Op 1 . + CDS 201481 - 201795 442 ## EF1895 hypothetical protein 214 91 Op 2 . + CDS 201808 - 202182 497 ## EF1894 hypothetical protein 215 91 Op 3 . + CDS 202183 - 202251 64 ## 216 91 Op 4 . + CDS 202306 - 202536 262 ## EF1893 hypothetical protein 217 91 Op 5 . + CDS 202606 - 203622 726 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins + Prom 205185 - 205244 3.4 218 92 Tu 1 . + CDS 205283 - 206089 127 ## BpOF4_20219 putative COX1/OXI3 intron 2 protein 219 93 Op 1 . + CDS 206191 - 206547 379 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins + Term 206571 - 206616 -0.6 + Prom 206549 - 206608 2.1 220 93 Op 2 . + CDS 206634 - 207074 507 ## EF1889 hypothetical protein + Term 207081 - 207131 2.1 + Prom 207122 - 207181 2.0 221 94 Op 1 . + CDS 207232 - 207309 74 ## 222 94 Op 2 . + CDS 207302 - 207469 271 ## + Term 207492 - 207533 6.5 + Prom 207613 - 207672 2.5 223 95 Op 1 . + CDS 207818 - 209002 953 ## COG2946 Putative phage replication protein RstA 224 95 Op 2 . + CDS 209035 - 209133 154 ## Predicted protein(s) >gi|307679257|gb|GL456470.1| GENE 1 1182 - 1886 209 234 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764767|ref|ZP_02171821.1| ribosomal protein L15 [Bacillus selenitireducens MLS10] # 4 234 6 228 234 85 27 2e-15 MITALIIAGGVGKRMGQEIPKQFIMVEEKPIIIYTLESFQKHPLIDRILVVCKKGWEQTL DAYAKEYHIDKLQWIIPGGNSGQESINNGVNFLKEHSNPEDTIVIHDGIRPLVDELVLSD VIVKCQEYGNAVTSLPYNEQIFVKETEETTRQYINRETLRRVSTPQAYKFEKLTWAYEKA FRENIGISESSYTNTMMVDLGETLYFALGSDKNIKLTTQDDLQLFKGFLKMKEE >gi|307679257|gb|GL456470.1| GENE 2 1900 - 2958 1035 352 aa, chain + ## HITS:1 COG:SMb20239 KEGG:ns NR:ns ## COG: SMb20239 COG0451 # Protein_GI_number: 16263977 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Sinorhizobium meliloti # 28 344 11 314 346 132 30.0 1e-30 MLFTDDNYLSDVERVLEKTPDWTKVTNKSVFITGASGMIGTFLIDVLMYQNKTRNANISI WAMGRTLSRLEERFTSYLEDPLFHIVIGDVTEEIQIAEACDYVLHCASNTHPKSYASDPI GTIMTNIAGTQHILDYAVKANSEKVLFLSTVEIYGENRGDLDKFTEDYCGYIDCNTLRAG YPEGKRASESLCQAYIQKYGIDVVIPRISRTFGPTMLLSDSKASSQFIMNAVHKENIVLK SAGTQLYSYAYVADIVSALLFLLVKGQKGEAYNVSNEHCDITLRTFAETLANVAGTKVIH GEATAQEKQGFSKATKALLDNQKIYALGWRPLYDSMEEPLKHTIKILEGSGN >gi|307679257|gb|GL456470.1| GENE 3 2960 - 3940 901 326 aa, chain + ## HITS:1 COG:SP1365 KEGG:ns NR:ns ## COG: SP1365 COG0463 # Protein_GI_number: 15901219 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Streptococcus pneumoniae TIGR4 # 4 322 6 326 328 229 40.0 4e-60 MPKISIIVPVYNVEKYLEKCVRSILAQTFTDFELILVDDGSPDSSGAMCDQFAEQDQRVK VIHKENGGLSDARNAGIELATGEYLGFVDSDDYIADDMYELLYTNIVKEDADLSICGIYD VYEGKEPVEKQQQYIVLDKVAAMKMILEAKVVSVHAVNKLYKKEIFEDIRYPVGMITEDG AVILSILEHTEKIVIDTQQKYYYFHRANSISSNLFSKKDLDTINVWKENEKYILDRYPEL SNVVHTRVCWANFIVLDKMMNSKLNNEEKKIQKEIVTFLRKNFKFIMKNQYFTMPRKVGA IALQIGVPYYKMIAILEEKHRKTKNE >gi|307679257|gb|GL456470.1| GENE 4 3956 - 5350 575 464 aa, chain + ## HITS:1 COG:no KEGG:EF2169 NR:ns ## KEGG: EF2169 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 8 458 6 460 467 292 37.0 2e-77 MWVNNFLEKTKLPFLIIFEFMLLLRTISLYSLLPSKVDTLVFGLISIWAMVYILNQMFFI LKNKRFKQFDPMLVIFIVMLFFVTLIHYQTYFIANLKLVIWQAIFLLVIYQIGKEQDKKT FKVLEKILLIVWGFLVVIAICMFFIQYSYTAPLDKIYNGLRIGFFENRLYGVFADPNFAA TISVVSMILSVSLLFQTTLKKWKWLLIMNTLIQWIYITLSGSRTAFVELMVIIFVGSFFV VYQKTTEKKLGLQLLYSIITSIGMVFFAYIATKLIERGMLAILDLLNNVEYKSTTNVSKN SPDVSLDRPDVENKTDISNNRFGLWKSSFEIFQSNIWFGTSPRNLVTYAQHYLPNTLIAV KQQTSHNFFFYTLATTGLAGTIPLILFLINKILTTLQVLFSKRINIFNDNFLRNVLIVLT ILVSAMFLTELILVNKIGTFLFWLYLGSVSSQLVKNNNKFLFWR >gi|307679257|gb|GL456470.1| GENE 5 5353 - 6177 562 274 aa, chain + ## HITS:1 COG:L15884 KEGG:ns NR:ns ## COG: L15884 COG3475 # Protein_GI_number: 15672196 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: LPS biosynthesis protein # Organism: Lactococcus lactis # 1 274 1 273 278 165 39.0 8e-41 MKPLTIKEIQETSTEILVYIDNICRQNNIEYSIYYGSLIGVERHQGYIPWDDDLDIVLTR PNYDRLINILSKDKNYLLLSLETRKNYRYTFAKLVDTRTCVKSKQFYNSEDPELGVFVDI FPIDGFPATSSERLDFGRQCELYRENMLATLNNSYAISKSRWKAYLKRVFLYPRYRKLLK QGDYDFWKRKFMDKVTTYPIESSIECGYIEFINEEWGVFPKEWFDHYEDVLFAGNKVRAI KDRKLFLSLRYGNYMELPPISEQVTHHPYTFYWK >gi|307679257|gb|GL456470.1| GENE 6 6200 - 7117 559 305 aa, chain + ## HITS:1 COG:no KEGG:Avi_3137 NR:ns ## KEGG: Avi_3137 # Name: not_defined # Def: hypothetical protein # Organism: A.vitis # Pathway: not_defined # 83 295 88 310 330 96 30.0 2e-18 MDYTRMMIITLDEKSVLFSTDAQKLGVHVEKYFSKRPFVVKLLNQLDKRIDTTFARFFYG EWKKNLSKIDFILLNSHYFSRPLIKYLNRKYPYIRIAIWYSNPVEKDTPISYYADLNCEL WSFDIGDCEKYQMHFNNQFIDETKVVAGQADSKYQSDVCFIGVDKQRLSYLLELEAYFVE CNLNPFIYVVDSSKNSYSNYDYKKPIPYSELIKYEANTSAILDVVQENQHGISLRPLEAL FLNKKLITNNRTVLNMDFYEKENVFLLNGQNMSEILTFLKVPMKPVSETVKEKYSFKGWL NNFFI >gi|307679257|gb|GL456470.1| GENE 7 7188 - 8609 876 473 aa, chain + ## HITS:1 COG:no KEGG:EF2166 NR:ns ## KEGG: EF2166 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 473 1 473 473 769 97.0 0 MNEKAKSVVKNLYYTVAANFATLGISVLLNLFVPKLLGVREYSYWQLYVFYASYVGFFHL GWIDGIYLKIGGEEYENLDKRNLGSQFWYLAIFECCISAFVILWAYFFMPKEYQGIILIL TAIVSVITIAKTFILYVFQSTNRIKEYAQLSRNDRYLYVLFIAIYFALGGRDFYWLIIMD ILSKLIITVWGMFRVKDMLRVNMMNLKEVTPEIVDNINIGSKLMLSSIASMLIMGTIRFF VQQRWTIETFGKLSFTLSLSNMFLTFINAVGIVMFPLLRRTNKERLPSLFVTLRGVFVPL TYAILLLYVPVKFVLGMWLPEYSESLKFMGILFPIVIYEGRMSLLINTYLKTLRKEKTIL FVNVLTLALSLILSLFVIFVVGNLNLTVGLILVSLAFRCNLAEIFLCKDMNVKIGNSTVL ETLVTLLFIFSNLWFGGSLYSFISYGIVYIIYFLFIHKSFVNNAKNLKYLVKG >gi|307679257|gb|GL456470.1| GENE 8 8711 - 9676 973 321 aa, chain + ## HITS:1 COG:L12335 KEGG:ns NR:ns ## COG: L12335 COG0451 # Protein_GI_number: 15672193 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Lactococcus lactis # 3 315 6 313 313 387 64.0 1e-107 MRNFLITGGAGFIGSTLANYYSKDNQVVVIDDLSMGQTENLNTSENITFIEGSVTDQQLM EKVLREYQFDYIFHLAAIASVADSVARPVETHQVNFESVLQLLELIRKYQKDLKRLVFAS SAAVYGDEPTLPKQEESVIRPLTPYAVDKFASEKYVLNYCHLYDVPTSAVRFFNVYGPNQ NPNSPYSGVISIVMDSYKRLLANQEVTFNIFGDGKQSRDFVFVEDVVQALNLVAHSDQSL GEVYNVGTGKATDLNELISSLNDIMKVTLPVEYKEARAGDIKDSLADISKLRAIGYEPKY SIQSGLDKYVNYELKAEGKQR >gi|307679257|gb|GL456470.1| GENE 9 9673 - 11484 1033 603 aa, chain + ## HITS:1 COG:no KEGG:EF2164 NR:ns ## KEGG: EF2164 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 603 1 603 603 1060 97.0 0 MKVKLNKKKIFICSIIITFLVMLTLNNLTPLLADDYEYLYKTKSWMTILIDEYNQYMTWT GRSVVHIIARIFLLLPKGIFNVFNALAYTIVTYLVYRLTLQKQDEKYNSFRFIIIQVLFW LFTPAFGEVFLWETGSANYLWGSLIILSFLYVYHREIIEEHVFTKTKLMIFLMFALGILA GWCNENTSGGALLIVLGYLGWQFYTKRKLSLWMFTGVAGNAIGLALMALAPGNKIRATYF ARSTWSLPRKAMTGIITIFEQMKENLSLFLVILILLLVLYAYISQDKKRVYLSVVYFISG MATMLVLAISPAALDYGRSYYGAVLFLIIAFSMSLPNYKVNIRFSPIYSVLYVILACTFF MNVMVGVSDIFLSKLDLTKQYSYLVEQEKKGNINPVFPDISYSNTTKYSAYSNHLSHVKT NSDAQVNRSVAKYYGLESVRSVSEKDWDNIYRNGNPELMNIFNLNDYLQKLIDTQYTILL SGYGNQVYLSQAEESLLKDLGLGVKFEGNNAWTLSAVISKDNKTVETNAELSRLSGKFEA LNYDVFSSYTNYENQTFASVKINDTEMSRNKKGLNFVIIDNNTNKVIDSVNFDITEKNAP GMR >gi|307679257|gb|GL456470.1| GENE 10 11593 - 12339 729 248 aa, chain + ## HITS:1 COG:L1007 KEGG:ns NR:ns ## COG: L1007 COG0584 # Protein_GI_number: 15672046 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Lactococcus lactis # 2 247 34 281 281 223 45.0 3e-58 MTDIIAHRGSKGTHPENTCIAFREAVRVGAEGIELDVHLSKDGYLIVMHDETVDRTTDGH GEIQQLTLNELKQLDAGSWFQKNPSVQCVPTLEDVLNCLVEEQFNGFLNIELKTDIIHYE GIEKKVVQQMKQKKWPFRYLYSSFYFPSLVKLKKADPKTEIAFIYESAEDLSQAGPAFAL VDSLHPKMSWVLAHEKELIAIGKPLRPWTVNRMEEMENCFQLKLAGVHTDFPEEAKFARQ NWQEEGET >gi|307679257|gb|GL456470.1| GENE 11 12340 - 13269 873 309 aa, chain + ## HITS:1 COG:L15012 KEGG:ns NR:ns ## COG: L15012 COG0324 # Protein_GI_number: 15672608 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA delta(2)-isopentenylpyrophosphate transferase # Organism: Lactococcus lactis # 3 297 5 288 294 280 53.0 3e-75 MEKVLVIVGPTAVGKTALSIALAKKFNGEIISGDSMQVYRSLDIGTAKVTETEKEGIPHY LIDCREVSETYSAADFQKEGRQKIKEITEKGKLPIIVGGTGLYIQSLLYDFQLGSREIDD SPEIRETYNLFAEEKGNQALWQLLQQKDPLAANSIHFNNRKKVIRALEVFDKTGYSILTP KEKPARLYDYYLLGLETDRALLYERINQRVDQMMTEGLLEEAKQMFQQPHAQAAQGIGYK EFFPYFSGEQSLEMAVETVKQQSRRYAKRQLTWFRNRMAAHWWNLVQQPTDLPKLEKEVA EWLQQKESE >gi|307679257|gb|GL456470.1| GENE 12 13273 - 14514 580 413 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 [Roseobacter sp. AzwK-3b] # 24 390 30 406 425 228 38 2e-58 MTTHEKVILVGVETEKNYQTFSASMEELANLTETANGEVVFVLTQKRPQVDRQTVIGKGK LEELIQLTDAYEADIVIFNHELTPRQNQLLSEALAVRVIDRVQLILDIFALRARSKEGKL QVELAQLDYLLPRLAGQGKQLSRLGGGIGTRGPGETKLESDRRHIRNKILGIRRELKEVT AHRERSRQKRQNSELFQIGLIGYTNAGKSTILNMLTTAGTYSEDQLFATLDPLTKKWQLP QGMEVTLTDTVGFIQDLPTQLIEAFQSTLEESRTMDLLLHVVDASAPDRLQHERTVQTLM KELALENIPCLTVYNKRDQVDSKEFVPTLFPNVLISTKISEDKERLVQAIRAQMMELLEP YQLEISPTDGQLLSELRRMTLMISEEYAENENRYIVKGFAKKKSKWLAESEKE >gi|307679257|gb|GL456470.1| GENE 13 14717 - 15100 460 127 aa, chain + ## HITS:1 COG:SPy1878 KEGG:ns NR:ns ## COG: SPy1878 COG0789 # Protein_GI_number: 15675697 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 115 1 112 123 144 67.0 5e-35 MREKELRRSMSVFPIGTVMKLTDLTARQIRYYEEQGLIHPERSEGNRRMYSLNDIDVLLE IKDYLSDGLNMAGIKRVYEMKLEEQKNTAEATRPLTDADVRQILYDEILSQGGLTQQNPF QSNVPRL >gi|307679257|gb|GL456470.1| GENE 14 15143 - 16483 1464 446 aa, chain + ## HITS:1 COG:lin1337 KEGG:ns NR:ns ## COG: lin1337 COG0174 # Protein_GI_number: 16800405 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Listeria innocua # 7 446 5 444 444 714 75.0 0 MTRKAKTAEEIKHIAEEENVRFLRLMFTDIMGTIKNVEVPVSQLDKVLDNKMMFDGSSIE GFVRIEESDMYLYPDLSTWMIFPWESDHGKVARLICDIYNPDGTPFAGDPRGNLKRALAD MKELGFTSFNLGPEPEFFLFKLDENGEITTDLNDKGGYFDFAPTDLGENCRRDIVLELES LGFEVEASHHEVAPGQHEIDFKYADVVDACDNIQTFKLVVKTIARKHGLHATFMPKPLFG INGSGMHCNMSLFNEEGNVFYDESGEMGLSQTAYHFLGGLLKHARAYTAVCNPTVNSYKR LVPGYEAPVYVAWSGRNRSPLIRVPESRGLSTRLELRSVDPSANPYLTMAVLLQAGLDGI RNELTPPPAVDRNIYVMNEEERQHAQIEDLPSTLHNAIKELRKDQVMIDALGRHIFANFV EAKRMEWAAFRQTVSEWEREQYLELY >gi|307679257|gb|GL456470.1| GENE 15 16783 - 20472 3970 1229 aa, chain + ## HITS:1 COG:lin0824_1 KEGG:ns NR:ns ## COG: lin0824_1 COG0674 # Protein_GI_number: 16799898 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit # Organism: Listeria innocua # 1 416 1 414 414 614 70.0 1e-175 MRKMKTMDGNAAAAYISYAFTELAAIYPITPSSTMAELVDQWSAEGKKNIFGQPVKVVEM QSEAGAAGVVHGSLKTGALTTTYTASQGLLLMIPNMYKIAGELLPSVFHVASRALTTNAL NIFGDQGDVMAARQTGFAMLSESSVQEVMDLAPVAHLASIEASVPFMNFFDGFRTSHEIQ KVAVLDYEELAPLVNQEKLAEFRRRSMNPNHPSVSGMNQNPDIHFQQRETINPYYEKLPG IVQKYMKEINRLRGTNYDLVTYYGAEDAEEVIVTMGSVAQTIEQTVDYLQEQGRKVGFLN VHLYRPFPVETFLEKIPQSVKAIAVLDRTKEPGAGGEPLLLDVQSAMYEADIRPTIIGGR YGLGSKDVLPNQIVAVFDELMKERSAMKKRFTIGIDDDLTYTSLEVGKPLDLTNPKTYQA KFWGFGSDGTVGANKSAIKIIGDHTDKYAQGFFYYDSKKSGGLTVSHLRFGETPIRSTYL IEHSDFVACHTAAYLHTYDLVKGLKKGGTFLLNTIWNDEQLARFLPNQLKRYLAENEIQF YTINAVKLASEVGLGGRINTAMETAFFKLAQIMPFEQVLPILKDEALKSYGHKSMKVVEK NIQAIDKTVELLHQVPVPAEWKTLEVQPRKRSENVSDFVHEIVEPINRQEGNALSVATLA KNGMTDGRMPLGTAAVEKRGVALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTE APEGFIVRDLRGADGLKYRIQVSVKDCTGCGLCVEACPAKGKALVMRPYEEEKEQAMNWA FAMTLRQKENPAKPNTVLGSQFNKPLLEFSGACSGCGETPYVKLLTQMFGDRMLIANATG CSSIWGAAAGVTPYTTNEQGQGPAWSNSLLEDNAEFGYGMLLATQARRERLASKMTKAFS VASDSLRLLMEDWIAHLSESEGTQQRAAKLRAALLEEKTNQPLLEAIYDDQDLFVKPSQW MIGGDGWAYDIGYGGIDHVLASGADVNMLVLDNEVYSNTGGQTSKATPASAIAKFAASGK YASKKDLGMMAMTYENVYVAQIASGANQMQTIKAFEEAEKFPGPSIIIAYTPCITHGLAG GMSQTLKEAKDAVHSGYWSLYRYNPLLREKGKEPMILDFKKPDFSLMKEFMRQQVRFASL ESSQPDTAELLFNKTINDAKRRFYNYARLAGQEEKIRAKLEKQSEPEITAPENEKPRVKK ERVVDPEAEARRAARRAERAAKRKQRGQD >gi|307679257|gb|GL456470.1| GENE 16 20669 - 21553 814 294 aa, chain + ## HITS:1 COG:BS_ybbP KEGG:ns NR:ns ## COG: BS_ybbP COG1624 # Protein_GI_number: 16077243 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 30 268 14 253 273 291 60.0 9e-79 MSFQLNQLLDLNYWQQVISTDFLSKDFVINIIDILVVWYLVYKLIMLVRGTKAVQLLKGV AVFIIIRILSEIIGLHTLSWLMNQVIMYGVIAAVVIFQPEVRRGLEHLGRSSFFRPNKGA QQEDERIIQAFDKAIQYMSKRKIGALITIERNTGLDEYIETGIDLDADITGELLINIFIP NTPLHDGAVIIKNEKIAVASAYLPLSESNLIPKEFGTRHRAAVGISEVSDAITIVVSEET GDVSLTLNNELIPGLTQEEYLTILRKELISESSEDKKSALQHFIDDVTKGVKRK >gi|307679257|gb|GL456470.1| GENE 17 21550 - 22713 1397 387 aa, chain + ## HITS:1 COG:SPy1037 KEGG:ns NR:ns ## COG: SPy1037 COG4856 # Protein_GI_number: 15675034 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 2 312 3 314 318 146 33.0 7e-35 MRKASQKSWFNGLLSLLFALLLFFNANATGNNPSNSGSSQTYSETLNNIPVQVQYDKDKY YVSGFEESVNVHLRSANRIQLNMESNADTRNFQVVADLTKLPLGTSEVPLTVRGLSSAVT AEIEPKTVTVTIEKRVTKKFDVEAQLSDNIEKEGYKVKNISVDPKTVEVTTGEETAKAID KVIAPVSSAKQTIDTIKQTVNVQALDAKGQVLSIENPAPQVKVTVGLTAPTKDVPLNVSM TGTPPAGIAHYNYSLSTYQVRVSGPQSILDTLESIEVPVDISDIRKETKQSVTIPVNGEY VVTPDEVDVSLSPVYNQQQSSNTNETSEEPASSTTVGSGSQAVQPSTSSQVESNTSETTS EGSTVESTTAGSTENTENQVTKENQNG >gi|307679257|gb|GL456470.1| GENE 18 22706 - 24061 1848 451 aa, chain + ## HITS:1 COG:SPy1038 KEGG:ns NR:ns ## COG: SPy1038 COG1109 # Protein_GI_number: 15675035 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Streptococcus pyogenes M1 GAS # 1 451 1 450 451 606 71.0 1e-173 MGKYFGTDGVRGIANKELTPELAFKLGRYGGYVLSQHEDSSRKPRVLVGRDTRISGEMLE QALIAGLLSVGIEVFQLGVISTPGVAYLTRLQKASAGVMISASHNPAEDNGIKFFGADGF KLVDDQEAEIEALLDAEEDTLPRPSAEGLGSLDEFPEGLLKYSQFLVQSIPGDLADMTVC LDAANGATATAVNRVFADLETDFYTMGTSPNGLNINDGVGSTHPEALAEMVVEKGADAGL AFDGDGDRIIAVDELGRIIDGDKIMYICAKYLAEKKRLKKDTIVTTVMSNLGFHKAVEEI GLKDVVTQVGDRYVVEEMRKNDYNFGGEQSGHMIFLDYNTTGDGMLSGIQLLNVMKQTGK KLSELADEVTIYPQKLVNIRVTDKNGAMEVPAIKAVVEQAEAEMNGEGRILVRPSGTEPL LRVMAEAPTQEKVDYYVDKIAEVVRAEIGVE >gi|307679257|gb|GL456470.1| GENE 19 24291 - 24842 420 183 aa, chain + ## HITS:1 COG:SA2477 KEGG:ns NR:ns ## COG: SA2477 COG4720 # Protein_GI_number: 15928271 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 2 183 3 184 184 234 67.0 4e-62 MKEKMSVKTIVAIGIGSAVFVILGRFVVIPTGIPNTNLETSYPFLALMSVVFGPVAGGLI GLIGHTLKDFTTYGSAWWSWIICSGIIGIIFGFAGRKMDLQHGEFTTNDMVRFNIFQAFG NIVVWGLIAPSLDILIYSEPASKVFTQGVFATVSNIVAVGIIGTLLMKAYASTRTKKGSL SKD >gi|307679257|gb|GL456470.1| GENE 20 24943 - 26649 278 568 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 305 556 134 384 398 111 31 2e-23 MKKPIITFNNFSFQYHSQSEPTLKGIQLTIYEGEKVLIVGPSGSGKSTLAQCINGLIPNI YEGEIQGTATVAGENIQETSLFDLSFDVGTVLQDTDGQFIGLTVAEDIAFALENDAVEQA EMKKAVQKWSEIVELNQLLQHRPQDLSGGQKQRVSMAGVLINQSKILLFDEPLANLDPRA GQETMTLIDTIQQETKATVLIIEHRLEDVLCESVDRIIVMNEGAIISDTTPDELLRQDTL TQQGIREPLYVTAMKYAGIDLTQVSHLDKLAEVSGETVLPKMTQWSVQPSSVSAVKGAEL LRLEQVSYQYDRHGEKVLDDFSVTIHHGEMISIVGKNGAGKSTLSKIICGFITPQSGKIL WEGQDFSNYSIKERADKIGYVMQNPNQMISKKMIFEEVALGLVLRDVPQAEIEERVTNIL HICGLYPFRNWPISALSFGQKKRVTIASILVLEPELLILDEPTAGQDFKHYTEMMTFLEE LNRLGVTILMITHDMHLMLEYTTRALVVCDGRLLADATPVAVLTDEKLIQAASLKETSLF TFAKALGLENPLLFTEKFVAYDREVRFG >gi|307679257|gb|GL456470.1| GENE 21 26646 - 27479 925 277 aa, chain + ## HITS:1 COG:SA2475 KEGG:ns NR:ns ## COG: SA2475 COG0619 # Protein_GI_number: 15928269 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Staphylococcus aureus N315 # 1 277 1 277 277 312 57.0 4e-85 MSERQMLGYHPDSTWIHRLNGTSKLVFLIVVSVACMTTYDTRYLLGMSVVSLVLLKLSNI KWHQISFVIKFIAIFSLLNILTVYLFAPEYGVDLYQSRTVIWEGIGRFTLTQEELFYEFN LVLKYFCTIPLALIFLLTTNPSEFASSLNRIGVSYRISYAVALAIRYIPDIQEDFFNISL AQQARGYEMSKKGRLGQRIKGVAQIVLPLILSSLDRIETVSTAMELRRFGQKKNRTWYAQ QPFHLRDFSVMLLALCLLGISFWLFHVNGGRFYNPFQ >gi|307679257|gb|GL456470.1| GENE 22 27922 - 29730 2192 602 aa, chain + ## HITS:1 COG:SP0266 KEGG:ns NR:ns ## COG: SP0266 COG0449 # Protein_GI_number: 15900200 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Streptococcus pneumoniae TIGR4 # 1 602 1 602 602 744 63.0 0 MCGIVGMIGKENVTESLIQGLTKLEYRGYDSAGICVNDQSQQPHVVKAVGGIADLAAKLT PEIDGTVGIGHTRWATHGEPTVANAHPHVSSDQRFALVHNGVIENFEELKEQFLSGAHLI GDTDTEIVVQLIAHFAENGFSTKDAFKAALAEIKGSYAFALMDKMDPNIIYVAKNKSPLL IGLGEGFNVICSDAMAMIKETNQFVEIVDGEIVTVTADKVVIETPEGQVINREPFEAQLD LNDIEKGTYPFYMLKEIDEQPAVMRKIVQAYTQGEKVTLDEALLEKINQCDRIYIIACGT SYNAGWVGKSLIETIASIPVEVHLSSEFGYNMPILSEKPFFIFLSQSGETADSRQVLVQV NELGHPSLTLTNVAGSTLSREADDTLLLHAGPEIAVASTKAYTAQIAVLAILAKAIGEER QTLAAVSFDVAHELSVVAAVMETLIDEKQQMKALVEDYLTYTRNAFYIGRGVDYYVSMEA ALKLKEISYIQAEGFAAGELKHGTIALIEEGTPVIGIVTDAKVAAHTRGNLKEVESRGAR NIVIALESLAKPQDQLIIPDVHPLLSALVSIVPGQLLAYYATLQRGYDVDKPRNLAKSVT VE >gi|307679257|gb|GL456470.1| GENE 23 29999 - 31279 1418 426 aa, chain + ## HITS:1 COG:SP0616 KEGG:ns NR:ns ## COG: SP0616 COG2348 # Protein_GI_number: 15900524 # Func_class: V Defense mechanisms # Function: Uncharacterized protein involved in methicillin resistance # Organism: Streptococcus pneumoniae TIGR4 # 18 422 3 407 410 276 36.0 6e-74 MLIYLTKKDCELFDMDQFSTLTEQEFTTFAMTHPAGNFLETPEMKHLLERRGWHCEYVGV KREGQLIAACILSKKKVKIGYAFDIDGGILMDYTDKKCVEAFFTGLKKYVKKNDGLYLTF TPNKQICLRDFNGGEVEKVNQETFDYFTSIGFEHQGFDVHNFDGAPRWLFVKDMAGLTEE DLWKSYGKDAKYDIKKTWEYGVTTRELRYEELPLFKKLTEETSARRNFEDKDLAYYQAVY EEFGERAKFMVAELNFATYLENLHEKLRKLQETLNEVNEALIANPKSRKKNNQKREFEDE VRTVRKRIDEAKEMKTSDEPEILAGALFIVHPQEVVYLFSGTYEKYKQYYAPYLIQHKML TYTVENNIPKYNFYGVDGVFDGSDGVLKFKQSFGGHVEELMGNFQWKAKPMKYALYHALK TIKEKV >gi|307679257|gb|GL456470.1| GENE 24 31328 - 31618 456 96 aa, chain + ## HITS:1 COG:no KEGG:EF2149 NR:ns ## KEGG: EF2149 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 96 1 96 96 146 97.0 3e-34 MENQVEVMTYAQLKEIMQVLEANEAITEDTKVFIDTGWDSVQEVAPDAVSIEKVAKFTVA DVLTNESFAGYSLEEKAEKMNAEGDLETAIIIRNLY >gi|307679257|gb|GL456470.1| GENE 25 31794 - 32759 960 321 aa, chain + ## HITS:1 COG:no KEGG:EF2148 NR:ns ## KEGG: EF2148 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 321 1 321 321 503 98.0 1e-141 MSTIHEFPKNYERFIAQGEEALVEHNQIAALENFQQAYQLQQTPPVNQKIVQLLLEMGEA DEALALAEAFQESYFENLETAAIYMQIYSQSRRFIEGYILLKQLLQTKKITLAQQKTLEQ QLMQVEEAYQQLETQQIQAIKRNLLVSDQLPVYQQLANIKTSLYLPKPVFVEVAKDLVMN QALSYFAREWFIEELALLQFSEPLTFLWYDNQPQAVLLEGKTGPLNTPIYSEICTELRNR LENDDPIMLQHLEEEIRLHLTYLYPLAETVISDPTIWVLGYLATYYPEYIEKELTEAKGR QIDAVQNVQQAIRTAFTQIML >gi|307679257|gb|GL456470.1| GENE 26 32847 - 33026 171 59 aa, chain - ## HITS:1 COG:no KEGG:EF2147 NR:ns ## KEGG: EF2147 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 59 5 63 63 87 100.0 2e-16 MRTRQKKLFLFSMILWLVEFLITRISDSFPGATPLFVVICLIQGILFTYFCLAFFYYPQ >gi|307679257|gb|GL456470.1| GENE 27 33239 - 34729 760 496 aa, chain - ## HITS:1 COG:no KEGG:EF2146 NR:ns ## KEGG: EF2146 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 496 1 496 496 857 99.0 0 MMKQLPTESKKFDLKNWCIENKAYLLLIILIYQVAVLSIGIINFPYLDDNARQVAGMTDF GTTYARWGSEFLSWFVQGSRHLTDLGLTTPILTGLILSLTSILAIYIIIDQKISWGSSLV ATLIGLNPWFLQCLSFRFDSPYMALSIFCSFLPFYWWQRNSFTFFLVSVFSLFVMFNTYQ ASSGIYIVIVLFLTFKQLLAGENFIALCKKVALAAIAYLLSIVSYLIELKFVPSATNNIG GSQALPSLHDIPSVAYQNSYHYFSELLNQSNRLWLLLLLLLLVLFFISHLSNSKINLGLS FLYCILYLGLASLLSFGIFIVYSRNIAGDAPRYIYGFAVFVTISMLSLFNNRQVKAIYLT SLLVASLLSYYILSFVLVYSSTLNYQKEAFNRQAAVLTDDLKNVVTNERKKVYLNTFFKN STVYANTSRNYPILSKIVPPNDGLYFPNYVWFNTSSNLGVEMAPLTDTDMSKNQKVVSNH FYDIYTNNKEIFVFMK >gi|307679257|gb|GL456470.1| GENE 28 34971 - 35177 90 68 aa, chain - ## HITS:1 COG:no KEGG:EF2083 NR:ns ## KEGG: EF2083 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 68 1 68 68 107 100.0 2e-22 MSTVFLRKKSFFFFYERAIDKLSSIRYSISCARDLYDFSKGTLTITRRSVAFENELYGFH FVAILELV >gi|307679257|gb|GL456470.1| GENE 29 35674 - 35781 60 35 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLSAVTRRRMAFVSDEQYKLFEENINSSLFNFENR >gi|307679257|gb|GL456470.1| GENE 30 35901 - 36038 69 45 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLPPHVQNLLTQIPFSSTEQYVRYPSSITGAPVAALCLTLGALAQ >gi|307679257|gb|GL456470.1| GENE 31 36143 - 37222 1185 359 aa, chain + ## HITS:1 COG:SPy0320 KEGG:ns NR:ns ## COG: SPy0320 COG1135 # Protein_GI_number: 15674484 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Streptococcus pyogenes M1 GAS # 1 345 5 354 354 362 55.0 1e-100 MIELKNISVTFQQKKQEIQAVQDVSLTIDKGDIYGIVGYSGAGKSTLVRVINLLQRPTAG TVIINKENILTFSKKELRQQRKKIGMIFQHFNLMKERTIFSNIDFSLKYSGLSKSERRQK ISHLLELVGLSEKRDAYPSQLSGGQKQRVAIARALANDPEILLCDEATSALDPKTTGQIL ALLKKLNQELNLTIVLITHEMQVVKEICNKVAVMENGCVVESNDIVSIFSQPQQPLTKDF IRTATHIDQALTTILEYPKLADLDKNQELIEFSYVGDQTNEPLIAQLYSQYQVYTNILYG NVEIVQNVPIGHLIVVLSGDEAQRQQALAYLAKQGVRTNVLNLSANEEKAEFTGDLKKE >gi|307679257|gb|GL456470.1| GENE 32 37230 - 37910 920 226 aa, chain + ## HITS:1 COG:L122401 KEGG:ns NR:ns ## COG: L122401 COG2011 # Protein_GI_number: 15672305 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Lactococcus lactis # 1 226 1 230 231 183 53.0 2e-46 MYQLFEKYFPNVVQLKQEFLQSTWETLYMVFWTALIAGVLGVLLGVVLVSTGPSGVLKNP PLYSVLEKIINVCRSIPFIIMLALIQPLTRILAGTTIGTTAALVPLVIGVIPFFARQIEN ALLEVDPGVIEAAEAMGTSPLGIIFRVYLIEGLPSIIRVSAVTIINLIGLTAMAGAIGAG GLGNLAITRGYNRFQTDVTFMATLIILIMVFISQAISNQLIKKTSH >gi|307679257|gb|GL456470.1| GENE 33 37930 - 38763 1109 277 aa, chain + ## HITS:1 COG:L118475 KEGG:ns NR:ns ## COG: L118475 COG1464 # Protein_GI_number: 15672301 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Lactococcus lactis # 26 271 32 281 286 211 50.0 9e-55 MKKFSKLIGLIGVLAFTIAGCASGSAKDTKTETVKLGVVGTKNDEWESVKDRLKKKNIDL QLVEFTDYTQPNAALAEKEIDLNAFQHQIFLDNYNKEHGTKLVSIGNTVNAPLGIYANKL KDITKIKDGGEIAIPNDPTNGGRALILLQTAGLIKVDPAKQQLPTVSDITENKRQLKITE LDATQTARALQDVDASVINSGMAVDAGYTPDKDAIFLEPVNEKAKPYVNIVVAREEDQEN KLYQKVVEEYQQEETKKVIAETSKGANVPAWETFGKK >gi|307679257|gb|GL456470.1| GENE 34 38778 - 39971 1694 397 aa, chain + ## HITS:1 COG:lin0542 KEGG:ns NR:ns ## COG: lin0542 COG1473 # Protein_GI_number: 16799617 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Listeria innocua # 9 397 5 390 393 266 38.0 4e-71 MSTITIQTIQEAIATEKEWIIHLRRHFHQYPEASLKEYETIKRIKEELLALAIPFVEVGE TGVLATIEGGLGAGKTILLRADIDALELPDATGAAYASKNPGLNHACGHDGHAAALLGAA KVLKKHQDTFSGTVKLAFQPAEEIGAGARQFVEGNYLEAIDQVFGIHLDSSVPVGKLVAT KGATNASCDIFKIEVSGQSSHVAQPQNGRDAVLAAASIVVELQKIVAREIDPLDSVVVGI GVLQAGTRYNIVANQATIEGTVRTFSQETRQFVLQRVEEIAHEIAQSHRTEIADFSVYAA ANPLINEEQATNRAQQVASEIVGFENVVTDHPKSLGADDFADYLAVIPGIYGRVGSRNPE NPATHFGHHHEQFDIDERALLLAAEYHVRYALNYLSE >gi|307679257|gb|GL456470.1| GENE 35 40086 - 40193 116 35 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFFVLTDKLTRKVAPDSLRTDEALLWSRAINFFIA >gi|307679257|gb|GL456470.1| GENE 36 40341 - 41879 1669 512 aa, chain + ## HITS:1 COG:CAC3339 KEGG:ns NR:ns ## COG: CAC3339 COG0488 # Protein_GI_number: 15896582 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Clostridium acetobutylicum # 1 509 1 512 518 429 44.0 1e-120 MSILTIEHLTHRFGEKVLYEEASLQVNKGDHLGLTGQNGVGKSTLIKILTGEVLPDEGTI QWQKNCKIGYLDQHVSVEQSLTMVDFLKQAFQELFDKEAKLTKLYEEYSQTASEKLLEQA GKLQTDLDESNFYQIDTIIQDLANGLGLQAIGLDKKLGELSGGQRSKVILAKLLLEAPDV LLLDEPTNYLDDTHIQWLVRYLNNFEGSFLLVSHDYQFLNEVTNCIADIEFGKLTKYTGN VEKSFAQKEQNKQTYLKQYQAQQEKIEKMEAYIRKYKAGNRATMAKSRQKQLDRLERLAP PGSLTKPAIEFPYQGLVATQALTTQKLVVGYREPLLEPLDLMVHVGEKVALKGFNGIGKS TLIKTLTKVIPSLDGEFHYPLNTKIAYFTQDLAWPNEQLTPLDYLSDRFPDTTIKERRSH LARAGLPDKLAMQSLALLSGGEQTKVKLAELMMQTSNLLFLDEPTNHIDEAAKKSLQEAI HVYPGTVFLVSHEADFYEEIVDRVIDIEELVK >gi|307679257|gb|GL456470.1| GENE 37 41934 - 42860 1327 308 aa, chain - ## HITS:1 COG:lin1961 KEGG:ns NR:ns ## COG: lin1961 COG0803 # Protein_GI_number: 16801027 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Listeria innocua # 15 305 14 308 310 347 61.0 2e-95 MKKFSLFFLTLLAGLTLAACGNQAAEKKEKLAIVTTNSILSDLVKNVGQDKIELHSIVPI GTDPHEYEPLPEDIAKASEADILFFNGLNLETGGNGWFNKLMKTAKKVENKDYFSTSKNV TPQYLTSAGQEQTEDPHAWLDIENGIKYVENIRDVLVEKDPKNKDFYTENAKNYTEKLSK LHEEAKAKFADIPDDKKLLVTSEGAFKYFSKAYDLNAAYIWEINTESQGTPEQMTTIIDT IKKSKAPVLFVETSVDKRSMERVSKEVKRPIYDTLFTDSLAKEGTEGDTYYSMMNWNLTK IHDGLMSK >gi|307679257|gb|GL456470.1| GENE 38 42847 - 43716 932 289 aa, chain - ## HITS:1 COG:lin1962 KEGG:ns NR:ns ## COG: lin1962 COG1108 # Protein_GI_number: 16801028 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Listeria innocua # 5 282 3 280 280 285 67.0 7e-77 MIAAFIDGLFRYQFLQNALLTSVIVGLISGVIGSFIILRGMSLMGDAISHAVLPGVAVSY MFGFNYIFGASIFGLLAALSIGFITQKSPLKNDTAIGVVFSSFFALGIIFISFAKSSTDL YHILFGNVLAVADTDILITCVVGVIVLIFVALFYKELQLTSFDPTMAQAYGLNIQFFHYA LMFLLTLVAVSSLQTVGTILVIAMLITPAATAYLLTNHLPTMIGLASTFGILSSVIGLFF SYSYNLASGATIVLTAALFFLLAFFFSPKKGLVFVNREKEMEESTNEKI >gi|307679257|gb|GL456470.1| GENE 39 43713 - 44462 189 249 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 22 226 17 227 245 77 28 5e-13 MRKSFNLAVQALTVQYQGRTALNNIHVTIPSGKITGIIGPNGAGKSTFIKGLLGLIKTKE RDVLLNNQAIDQQKTTIAYVEQRSALDLSFPISVFETVLLGTYPNLGLLKRPGKKEKQAA MAALKMVQLEDYAQRQIGELSGGQLQRVFIARVLAQGAEVIFLDEPFVGIDMSSEKVIMD ILKSLKNQGKMIIIVHHDLHKVSHYFDELIVLKNRLIAAGPVEQTFTAETLQEAYGDLLG DLLIQGVAK >gi|307679257|gb|GL456470.1| GENE 40 44675 - 45649 1225 324 aa, chain + ## HITS:1 COG:SPy1123 KEGG:ns NR:ns ## COG: SPy1123 COG0462 # Protein_GI_number: 15675103 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 324 1 323 326 416 61.0 1e-116 MTENYQDDTLRIFSLNANRPLAEKIAASVGTELGKSTVRQFSDGEIQINIEESIRGDHVY IIQATNAPVNDHLMELLILIDALKRASAKTINVILPYYGYARQDRTAKPREPITAKLVAN MLVEAGATRLLTLDLHTVQVQGFFDIPVDNLFTMPLFAHYYRQQALVGEEIVIVSPKNSG VQRARSLSEYLDATLAIVDHEEIDGVRQEGYVIGNVAGKKCILVDDILNTGQTLATAAEV LMKNGAQEVYACASHGLLSEGAKATLENAPIKEISITDSVYTTADRQPATLNIISCAELM GEALLRIHENKPMSPLFRLEPKGE >gi|307679257|gb|GL456470.1| GENE 41 45806 - 46951 1184 381 aa, chain + ## HITS:1 COG:lin1548 KEGG:ns NR:ns ## COG: lin1548 COG1104 # Protein_GI_number: 16800616 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Listeria innocua # 4 381 5 381 382 410 56.0 1e-114 MEPIYLDHAATTPLHPTVIQAMTENMQTTFGNPSSIHQFGRKAHGLLEEVRQTIAESLQA KPHEIIFNSGGTEGDNTAILAVAFSRQKEGKHIITTAIEHPAVLRTMEYLETLGFEVTYL PVNENGQISMDQFKKSLREETILVSMMYGNNEIGNRLPIAEVGAILKNHSAIFHTDAVQA YGSEVILPHELGIDLLSISAHKINGPKGVGFLFKSDAIQLPPLLHGGEQEEKRRAGTENL AGIIGMGTAVSLLTSAEKQARKTAYQSFQTIILKALEEANIDFSINGEPTNRLAHVLNLH FKGIPSDLLLMHLDLRGIAISTGSACTAGTVDPSHVLTAMYGENSSAIKESIRISFGYGN TPEEIATFSEVLVAVIQQLKK >gi|307679257|gb|GL456470.1| GENE 42 47019 - 47363 400 114 aa, chain + ## HITS:1 COG:no KEGG:EF2071 NR:ns ## KEGG: EF2071 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 114 1 114 114 208 100.0 5e-53 MAFTTTAAVEGSTVFYKVHPSAKRYTLKDNGFTETKSGNFQLIRSLDPTPQRNEGFKLKI TITADLKELKMSITTANGLKPMNIFKNEQHEMSKEKYFFLMDGLISRGVLEKVE >gi|307679257|gb|GL456470.1| GENE 43 47589 - 48713 1391 374 aa, chain + ## HITS:1 COG:SPy2188 KEGG:ns NR:ns ## COG: SPy2188 COG0482 # Protein_GI_number: 15675922 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Streptococcus pyogenes M1 GAS # 1 374 1 373 373 563 77.0 1e-160 MADNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCTATEDYKDVA KVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQLG ADYVATGHYAQVETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGMEKSEVR AIAERAGLATAKKKDSTGVCFIGEKNFKEFLSNYLPAKKGNMVTEDGEIKGQHDGLMYYT IGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVHFTVDTPM PKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVFYDGMECLGGGL IDRAYQDEKELQYV >gi|307679257|gb|GL456470.1| GENE 44 48893 - 50131 1146 412 aa, chain - ## HITS:1 COG:lin2884 KEGG:ns NR:ns ## COG: lin2884 COG0477 # Protein_GI_number: 16801944 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 16 411 4 399 402 422 53.0 1e-118 MYELIKSKIFRPRQPWEKNLLVLWFGTFMAGIGFSLVMPFMPLYINTLGTFTHQQLNFWS GITFSSTFLVTTIVSPWWGRLADRKGRKLMLLRASLGMAIVISLMGAVTSVYQLIGLRLL QGVFSGYISNATALVATGTPKEKSGQVLGTLATGSVTGTLLGPLLGGVTASIFGYRPTFF ITGTILLLVFVLSLVFVHEEFVPIEKNQAASGKQILKKLEHPHVILGMFITTLIIQASNN SISPIISLYIQQLLGGHGNVTLISGVIASIPGIATLIAAPRFGRLGDRIGSERILTIGLI LAIFVYLPMAFVQNVWQLAMLRFLVGISDACLLPAVQTLITRYSPSDAAGRIFSYNQSFQ ATGNVIGPMIGSSVSAAFGYRGVFISTSCLVLLNLLWVRRSTAELKKEKNDD >gi|307679257|gb|GL456470.1| GENE 45 50148 - 50663 569 171 aa, chain - ## HITS:1 COG:BS_yxkA KEGG:ns NR:ns ## COG: BS_yxkA COG1881 # Protein_GI_number: 16080938 # Func_class: R General function prediction only # Function: Phospholipid-binding protein # Organism: Bacillus subtilis # 1 170 3 165 168 113 38.0 2e-25 MHITNRSHLADRYGKRTSAEFLLHERPILSFPISLAAIPKEARYLSWELIDYDTIPLIGF PFIHWLAANVPVTNEIPEDFSRTALKPTIQGKNSLASPLGKQMIPALATETLPELTERYL GLSPRSGVHTYTLYVYATKNPLNLKEGFFANELHQALNDQRLAKAKFEFLY >gi|307679257|gb|GL456470.1| GENE 46 50796 - 51365 743 189 aa, chain + ## HITS:1 COG:CAP0028 KEGG:ns NR:ns ## COG: CAP0028 COG1309 # Protein_GI_number: 15004732 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 3 185 2 183 187 170 50.0 1e-42 MAKKRNLTKAKILESARNLAEELGVQQLTFQNLAVDLGIKYPSLYNHFKNIAEVKNALVD LLIQELNDALRRALVGKSGAEAIRIYAETYQQFAFENSAVYELLISVPKTQNQQLIEGIH ETNQIILQLLAFYPFNNEERLHKSRELRSLIHGYITLRFLGYFQREEATPEESYRRMIED FIASLEVAR >gi|307679257|gb|GL456470.1| GENE 47 51463 - 51828 316 121 aa, chain + ## HITS:1 COG:L100735 KEGG:ns NR:ns ## COG: L100735 COG4699 # Protein_GI_number: 15673831 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 1 119 1 119 122 99 43.0 1e-21 MYQVITMYGDNEPWWFFDDWQEDIVQEKTFDNLTDAETYYVEVWQKLSQNYTYVNTKPNY LTAFWNDGEERWCEECDEDLQQYFGLALLENHHAVTFENKAEFTTISNHFGKTKFCKRKV I >gi|307679257|gb|GL456470.1| GENE 48 51740 - 54040 2221 766 aa, chain + ## HITS:1 COG:CAC2947_1 KEGG:ns NR:ns ## COG: CAC2947_1 COG0550 # Protein_GI_number: 15896200 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Clostridium acetobutylicum # 75 657 1 615 618 459 42.0 1e-128 MRLLLKIKLSLPQYPIILAKQNSANGKLFETHEFKEKPQGIFFKLFFYSRNLEKIELIFG IIRKDSTQKGAKLVVAKQLIIAEKPSVAKDLSRVLGANQKNKNYYEGPNVIVTWALGHLL GLKMPEDLNKEWQTWQMETLPMIPKNLGIKPLPKTGHQLKAIKQLANRKDVSEAVIATDA GREGELVARWILEYVRFNKPVKRLWISSQTDKAIKDGFKKIRPAKDYDNLYYSALARAKA DWLVGLNVTRALTVKYQDNLSAGRVQTPTLAMVRQQEKTIEQFKPQTYFTISLTVESEKA KMTQKNPYALKERQEAEQLVKELSKQKGLVTDIQEKVKTENAPLPYDLTEIQREANQRFQ FSAKKTLSLVQSLYETHKIVSYPRTDSKYLTTDMKGTMKERLQAIADFSPEVKGYLKNGA VVKQQKVFQNAKVTDHHGLIPTEQRPRYEKLSNDEQKIYQMIVQRFLGLFAEPNQTKQTK VTVAFGKETFVFHQNKVVVAGWKTTAEQPLSTVQWQKGMTVAPNFTINKELTSPPKPLTE GTLLGKMEKHSLGTPATRAEIIEKLIKSELMERTNSGLSVSAKGKQLLDLVNPSLVTPEL TEKWEKSLEAIASGQQKSQLFLKDIEEDTKKLVREIKQSEKKYQDFSITQKKCPDCGSNL REKNTKDGKIYVCTNQECSYRRRKDPKVSNHRCPQCHKKMVIIEGKNGRSFKCKFCSITE KIPDKKERKQKMTKHEERRLMKKYSQPDEPEESALAQALKAAMNQE >gi|307679257|gb|GL456470.1| GENE 49 54125 - 54988 789 287 aa, chain + ## HITS:1 COG:BS_ydeE_2 KEGG:ns NR:ns ## COG: BS_ydeE_2 COG3708 # Protein_GI_number: 16077584 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 124 284 1 161 163 133 40.0 5e-31 MLANLNQAMDYIEEHLTEEVSFDELAKKTGISVYHFKRTFSFVAGMSLAEYIKKRRLAEA NLALLAGEKVTDVAFKYGYQSIEGFSRAFRDWTGQAPSEVMKTQIQKTFPKFSFYIDIKG GQSMDVKLIEKPAFQIVGVSQKVPLQYQGENQAIMELAQRITPQQRAEMHTFDDVYPHQV VNASFDFQEGRTTEGGEMTHMIGFATSQENTYEDLEQLSVPAHTWAVFPNEGPFPQTLQE TWARIFSEWLPSSGYQVVAAPEISFTQYQGPAEAKYSEIWLAVTATK >gi|307679257|gb|GL456470.1| GENE 50 54928 - 55059 60 43 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGVFFFFFFFFFWGGGHFSMVGFLYLVAVTASQISLYLASAGP >gi|307679257|gb|GL456470.1| GENE 51 55324 - 55764 102 146 aa, chain + ## HITS:1 COG:no KEGG:SmuNN2025_0700 NR:ns ## KEGG: SmuNN2025_0700 # Name: not_defined # Def: hypothetical protein # Organism: S.mutans_NN2025 # Pathway: not_defined # 1 92 19 110 145 70 48.0 2e-11 MLFRMVPKHNDVQFIQNHSFRVMLFRMVPKRKAVRAETATSFRVMLFGMVPKRLTKDCDL RYSFRVMLFRMVPKQTFLIWLFLPCFIAMLLKNKLSPQAIRNFHHKIRIFIIKDELFQFS KTNQVISQNVDRLRLVLPFFRKGFFY >gi|307679257|gb|GL456470.1| GENE 52 55761 - 55859 73 32 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIEEREEILVAPKKIVRNASVLFGFCLRKLYT >gi|307679257|gb|GL456470.1| GENE 53 55955 - 56017 65 20 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEMNNSGKLVSLCGGKLGRK >gi|307679257|gb|GL456470.1| GENE 54 56019 - 57437 1560 472 aa, chain + ## HITS:1 COG:L107726 KEGG:ns NR:ns ## COG: L107726 COG1271 # Protein_GI_number: 15672686 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 1 # Organism: Lactococcus lactis # 1 446 1 451 491 543 60.0 1e-154 MFDIVTLARIQFAMTTVFHFFFVPFSIGLALVVAIMETMYVVKKEERYRKMAKFWGNIFL LSFAVGVVTGIIQEFQFGMNWSDYSRFVGDIFGAPLAVEALLAFFLESTFLGLWIFTWDK MNPKVHVTFIWLVVFGSMMSAFWILVANSFMQHPVGYVINNGRAEMVDFVAVISNPKVWY EFSHVIMGAFTLGGMAVAGMAAFQLLKKRDISFHKASMRIGLWVTLFGSIGVLLAGDLQM KALIEGQPMKFAAMEGAYEDSDDPAAWTLIAWVDEREHKQVFGIDIPYMLSILSYNKLSG SVDGMDTVNKRLVEKYGDDKNYYPPVNTLFWSFRIMAGFGALMLLVAALGLFFTRKKKPS LYEKKWMLWIVALCTFAPFLANTTGWLVTELGRYPWTVYGLFTIEQSVSPNVSVASLITS NVIYFLLFAGLGSVMVYLVILELRKGPDYEAKKLAKENEPALDPFDKGVFGE >gi|307679257|gb|GL456470.1| GENE 55 57434 - 58447 993 337 aa, chain + ## HITS:1 COG:L109201 KEGG:ns NR:ns ## COG: L109201 COG1294 # Protein_GI_number: 15672687 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 2 # Organism: Lactococcus lactis # 1 330 1 331 331 357 61.0 2e-98 MSTLQLLWFVLIGVLFSGFFFLEGFDFGVGMAVQTLAHNDDEKDQVVATIGPVWDGNEVW LLTAGGAMFASFPYWYASLFSGYYLILFTILFGLIIRGVSFEFRHNMPEGKRRRMWNWTL SIGSFLVPFFFGILFISLVQGMPLDANGNMHAQFTDYFNLFSIVGGVALTLLCYLHGMNY IALKTEGPIRERARNYAEILYGVLYVGLVVFAVLMYFKTDFYEKNFAVTLILTLAIVVLT VIANVGVFKRKEMLAFLASGLTLVVLVALLFSGLFPRVMIGSEGFDLLIKDATSTPYTLK IMTWISLSILPFVLAYTAWSYYIFRKRISQTAVPEGY >gi|307679257|gb|GL456470.1| GENE 56 58452 - 60185 173 577 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 348 560 15 228 245 71 27 3e-11 MIDKDILQMPKIKKILVLLAGFSFLQAVFIIGQAFFLSKAIVGLWSGGHLNQQLQSILLF FIFYLGRHVITYFRERMLDTFSYERSKELREQLLTKIFRLGPNVVQKNGTGNMVTMALEG ISQTENYLQLILTKMMNMMIIPWIILAFVFTQDIRSGVTLLIVFPIIIIFMIVLGYAAQS KADKQYAAFQMLSNHFIDSLRGIDTLKLFGLSKKYAGSIYHTSERFRKATMSTLKIAILS TFALDFFTTLSVAVVAVFLGLSLLNGTILLFPALVTLILAPEFFLPIRDFSSDYHATLDG KNSFQAIQAVLALPEAEQTDVLTLDDWHQESQLSVTALNFSYEDATQEAIQSLQFSVDGR KKIGIIGASGSGKSTLINLLSGFLLPTEETSQLAINGQTIPHFLQKDWQKQILYIPQAPY IFQDTLANNIRFYTPEATDEAIQQAIQLVGLDELVKDLPEGIQTLIGESGRMLSGGQAQR VALARAFVDQKRHVLLFDEPTAHLDIETEVEMKERMLPLMNNHLVFFATHRLHWMEEMDY ILVMEKGQLVEQGTLAELIEKDGYYVQLMKQMRGGRQ >gi|307679257|gb|GL456470.1| GENE 57 60185 - 61948 234 587 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 312 568 91 354 398 94 27 3e-18 MEKQPTTKDVWKNDQWVRPFLKRYKKTLYFALLLGFLTFFSAGALMFTSGYLISRAASLP ENILLIYIPIVLTRAFGIGRPVFRYVERLTSHNWVLKMTSDLRLKLYNVLEKDAIFFKTK YRTGDILGLLSEDINHIQNLYLRTIFPTVIAWILYIFLVIALGFFSWWFALCMLLMLGVV VFLLPLVSVLVNGARQEKHKYAKNELYQTLTDNILGVSDWVFSQRGSEFVARYETDEANV RALDEKMKQFNRGRDFVLQLLFGVIAIAVLAWTSVRFPGNHGGAANWIGAFVLTVFPLID AFAPLPAAAQETTIYKDSIRRFNELPEGEDDSTEAPVQPNGTSLSIEHLSFAYENQEKKV LNDLSLTIPEKQKLAILGRSGSGKSTLASLIRGDLRPTSGEILLGNIPTEAFGETMTEYI GVMHQAPYLFRTTILNNIRIGREEASEAEVWAVLEKVGLKEMVAQLPEGLQTMVDEAGLR FSGGERHRLALARILLQDTPIVLLDEPTTGLDPITEQQLLETFFEALKDKTVIWITHHLQ GVTLMDQVIFIEDGQLEMSGTPEELLATNAHYQKLYRIDRGISSFEE >gi|307679257|gb|GL456470.1| GENE 58 62028 - 63008 993 326 aa, chain - ## HITS:1 COG:L186258 KEGG:ns NR:ns ## COG: L186258 COG0142 # Protein_GI_number: 15672163 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Lactococcus lactis # 1 326 1 326 326 305 46.0 5e-83 MNTFWKSFPDVERSLTETCELIEQTLHTRNEDIEEALVTLARSGGKLLRPAFFFLFAQLG DEEKQEKQQLLKIAASLEILHMATLIHDDIIDDSPLRRGAVTIQSQYGKDVAVYTGDLLF TEFFTLIADAMNGSEFMKINAQGMKRLLLGELDQMSHRFDRRMSIPAYLRSVNGKTAELF SLSCLEGAYFGHSSKEVQRLAKRIGRHIGIAFQVYDDILDYTADTETLKKPALEDLSQGV YTLPLLFAYQAAPDVFSPYLDKGRAITLEEAAEVAALVNDYHGVTEAQAFAKKVTNKAIT DIQQLPDGTAKETLLSLTELLLHRSF >gi|307679257|gb|GL456470.1| GENE 59 63130 - 64035 681 301 aa, chain + ## HITS:1 COG:L187450 KEGG:ns NR:ns ## COG: L187450 COG1575 # Protein_GI_number: 15672164 # Func_class: H Coenzyme transport and metabolism # Function: 1,4-dihydroxy-2-naphthoate octaprenyltransferase # Organism: Lactococcus lactis # 1 298 1 298 301 286 53.0 2e-77 MNREIFFELVELKAKTASVLPFLLGICFSWYQYGRLHVGYVLIFFIAMFIFNMAVDILDN YNDYHHATEVHDYKEKTNIIGRENLSLPLIRKMIFWMILVSALMGIGLSFIVGWPLLIMG LYCYLIGIFYSSGPKPLSSLPLGEVFSGFTMGFMITLICVYINTFEVFNWSAANLWGIFL VALPNTCYIANLMLANNICDLEEDENNKRYTLVHYLGKASSLKLFVGLNTIAMLAILLAV GLGLTPPTMLLMLLTLPFVRKQTQALLKEQVKSKTFVCAVKILAVGATAQVLFFAIGLWW L >gi|307679257|gb|GL456470.1| GENE 60 64064 - 65275 1558 403 aa, chain + ## HITS:1 COG:lin2488 KEGG:ns NR:ns ## COG: lin2488 COG1252 # Protein_GI_number: 16801550 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase, FAD-containing subunit # Organism: Listeria innocua # 1 402 1 402 403 345 44.0 6e-95 MNKKHVVILGAGYAGLKTLRELQKGAKDVEITLVDRNNYHYEATDLHEVAAGTQPAEKIT YNIMDVVDEKMTTFIQGTVKTIDAATQTVALEDGQTINYDYLVVSLGFESESFGIPGVQE HALQMVDVKTALNVYEHIQEQMRQYKATQNEEFLKIVVCGAGFTGIELLGSLVENKPKFA EIAGVSADQIQIYCVEAVTRLLPMFNEKLANYGVQLLKDSAIHLLLGKPIKEIKPGAVVY QDNEAGDLAELSAKTIIWTTGVSGSHVVGDSGFEARRGRVMVQPDLTDANHSNVYIIGDC SAVMDTETNRPYPTTAQIALKMGAHAAKNIQAQLKGEATKPFSFKSQGSVCSVGNTRALG IVGKTDIKGYPASFMKKIIMNKALFETGGTKEMMAKGRFDLYH >gi|307679257|gb|GL456470.1| GENE 61 65589 - 68012 2696 807 aa, chain + ## HITS:1 COG:SPy0458 KEGG:ns NR:ns ## COG: SPy0458 COG1674 # Protein_GI_number: 15674577 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Streptococcus pyogenes M1 GAS # 4 792 3 798 801 684 50.0 0 MAQKRSTNKKKSTTKKKTKKQQQQQERLNYMFLGLIFILFGVFGLFRLGFLGTLLANCLR LVVGNTFPFAAILLILYGLLVMIYGKDFPLKRGRPIFGAVLIYISVLLFFHAFMFRNVSG SQPDILGNTWEFLQSDLKANQVTQNVGGGMIGALLYQGTYFLVAQFGSYLIATLLLLAGI FLMSMWDFQQIVDHFQSIQDRLSHVSAKSQARQEEKEAKRAAKKEAKAAERQAKIEAAAQ QKLQERERMEQAAADRLTKTPVETHQPMVEEPAAPTPVQIDSFQQQNQAMPVPPIAATKP QREQEEEAADEAGVLEFEISEEAEDRDYQLPPTDLLDTIQATDQSGEYEKIEKNIGVLEQ TFKSFGVDAKVVKASLGPSVTKFEVQPAVGVKVSKIVNLTDDIALALAAKDVRMEAPIPG KSLIGIEVPNSAISTVSFRDIVEAQPSHPDKLLEVPLGRDISGMVQTADLSKMPHLLIAG STGSGKSVAINGIITGILMQAKPHEVKLMMIDPKMVELNVYNGIPHLLTPVVTNPRKAAQ ALQKVVQEMEFRYEKFAATGVRNITGYNQLIQQKNAEDGENRPILPFIVVIVDELADLMM VASNEVEDAIIRLAQMARAAGIHMILATQRPSVDVITGIIKANVPSRMAFAVSSGTDSRT IIDTNGAEKLLGRGDMLFLPMGENKPIRIQGAFISDQEVERVVAFVTDQQEAEYQESMMP TDEPTTSGGGEAPQDELFEEAKNLVVEMQTASISLLQRRFRIGYNRAARLVDELEAHGVI GPSEGSKPRKVFLQAESEEAAPETPEQ >gi|307679257|gb|GL456470.1| GENE 62 68143 - 68844 874 233 aa, chain + ## HITS:1 COG:ECs4225 KEGG:ns NR:ns ## COG: ECs4225 COG2188 # Protein_GI_number: 15833479 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 6 187 33 206 265 76 28.0 4e-14 MRRKSVLYLEVADQIKEDILSGKYPVGTFLPTETELEELFNVSKITIRRAIEMLATEEFV EKKSGRGTTVLSNRPYNKLSKAGTFTEFLNESGQKVTKKVLQVENLTLSKEMPAYQFLGE EVVHLSRLYLIDEQPYIYFNYYLPAAMKDVSLTEYKEESLYRLMDRHAIEIYKFEDRFEV ATLTEAEQKMLQTTETTGLKRIRRSLSPTGRCVEYSEAIYNTKIHPYVIEYEA >gi|307679257|gb|GL456470.1| GENE 63 68962 - 69711 988 249 aa, chain + ## HITS:1 COG:BS_yxdL KEGG:ns NR:ns ## COG: BS_yxdL COG1136 # Protein_GI_number: 16081015 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Bacillus subtilis # 1 249 4 252 257 278 54.0 6e-75 MLEVQNLKKVYGNEIKYEALKGINLTVQDGEFIGIMGPSGSGKSTLLNLLATIDSPTDGE ILLNGKNPNNLNQEQIAKFRRTELGFVFQSFNLMPTLTVEENIILPLTLDGEKVSVMKRQ LAELSERLGINHLLKKRIAEISGGQAQRVAVARAMIHHPQLLLADEPTGNLDTKSSKDVM GLLQQLNEEEAATILMVTHDPLAASYCKRIVFIKDGELIDEIIQNGNQKEFYDLIMVKLA EIEGVDNEF >gi|307679257|gb|GL456470.1| GENE 64 69701 - 71530 1583 609 aa, chain + ## HITS:1 COG:BS_yxdM KEGG:ns NR:ns ## COG: BS_yxdM COG0577 # Protein_GI_number: 16081014 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Bacillus subtilis # 1 603 1 620 622 257 32.0 4e-68 MNFNQFVIRNTIRNKHLYLAYFLSTMFSVMIFFTFTGFVFHPALANGLNPKAQMGMTAAA IIIYGFSFLFVLYSMDVFIQSRKKEFGTLMIQGMSPKQLKKMIFIENLVIGFFATIFGSI LGVGFSQFILWISNLLMHLGLGFYLPVMPFIITVISFAVLFLVISFFIQFRLPKATLQEL LKAGEMGKGEIKSSKVKSFLAVLLLIVGYGIALVAKGQLVLMVMFPVILLVILGTKFLFD QLSVSVIERLKRKPKIFWKKTNMVVLSDLAFRMKDNARSFFLVSVISTVAFAAIGTLYGV NEMIFKGISSVPYELTLSDSTNPENQEMKQFATKTFQEKNIQFDQIDYTMYKTSAGIQLI KTSEYNKLAKFIDEPTLTGEKVVNLSQKDAPSAASVDVKSVQLGNDQVLNIDKTEETNVL PTFGGVVVIPDSTSTDGIKAETETIWQPKAGTNREELIKAENIIGDKYPMLVGTAAMSAA ITQYYTPVLFVGLFIGIVFFVSAGSFLYFRLYSDMNTDVEKFKMIYKLGLTKKELKKMIY QQVGILFFTPIVVSFIHGAVALKAMYAVLDQPMQLAGWEVLGVFLLIQVVYYLIARTFYF KKVYHLVKD >gi|307679257|gb|GL456470.1| GENE 65 71654 - 72727 1058 357 aa, chain + ## HITS:1 COG:L184159 KEGG:ns NR:ns ## COG: L184159 COG0820 # Protein_GI_number: 15672161 # Func_class: R General function prediction only # Function: Predicted Fe-S-cluster redox enzyme # Organism: Lactococcus lactis # 3 355 10 363 365 553 75.0 1e-157 MQKESIYGLTREQLVDWFLAHGEKKFRATQVWEWLYTKRVASFSEMSNISKSLMTLLEEN FSLNPLKQVIVQEAQDGTVKYLFELPDKNMIETVLMRQEYGLSVCVTTQVGCNIGCTFCA SGLLKKQRDLTAGEIVAQIMWVQHYFDERGLDERVSHVVVMGIGEPFDNYVNVMNFLRTI NDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAISLHAPNNEVRTLIMRINRSFPI EKLMAAIDEYIEKTNRRVTFEYIMLSQVNDRPEHAQQLADLLRNKKKLSYVNLIPYNPVS EHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDIDAACGQLRSKQMKKEKVKNQ >gi|307679257|gb|GL456470.1| GENE 66 73017 - 74345 1311 442 aa, chain + ## HITS:1 COG:SA1270 KEGG:ns NR:ns ## COG: SA1270 COG0531 # Protein_GI_number: 15927018 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 4 437 5 437 440 422 60.0 1e-118 MEKKQLKREITTFGALSTVMGTVIGAGVFFKAASVVGHAQSASLAIFAWVLGGALTICAG LTSAELATAIPETGGAVKYIEYTYGKLAGFLLGWAQSIIYYPANISALSIIFSTQLINLF HLSANLLIPIAILAGTSITIINLLGTKIASLVQSTTLVVKLIPIALISLVGLFTPGQVAV SLFPVETTANTGFLVAFSGALVATMFAYDGWLGVGNVAGEMKRPERDLPKAIIFGLLLIT LIYALINFVFLKTLPIEQIAGNLNAASDASVAIFGPIGGKIVTIGILISVYGALNGYTMT GIRIPYALALDNLMPFSRQFQKLSKRFVVPYVAGIFQLAVAIIMMFFGTFDLLTDMLVFV MWLFNLLIFLAVFILRKREPELKRPYKVPGYPIIPIIASLGGIFILVTTSITQPILAFIG IGITLLGIPVYLVNKQKTKPKT >gi|307679257|gb|GL456470.1| GENE 67 74586 - 75554 833 322 aa, chain + ## HITS:1 COG:SP2053 KEGG:ns NR:ns ## COG: SP2053 COG2804 # Protein_GI_number: 15901873 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB # Organism: Streptococcus pneumoniae TIGR4 # 5 271 2 266 313 251 50.0 1e-66 MTENVKKLAHQLIEWGVLHGAQDVYFLPNDTEIAIFFRTGMQRTPYTQVSAEIGEKLIFH FKFIGGMDVGERRKAQLGATTYLIGETKQRLRLSSVGDFQNRESLVIRFLHRFGEQAEHF FFPHQLNEIEASCQKRGLYLFSGPVGSGKTTTMYRVAKKRSGEQQVIAIEDPVEIEEKRF LQLQTNEKIQLTYEALIKVCLRHHPDILIIGEIRDGETAQAVIRAALTGHTIFATIHARN LLGVQRRLIELGGPEHELAECLQGIIYQQILTTTINKEQVAGILYDYFFFKGAVIKISWQ KNLRKAWAYGFITEKTYFQAIE >gi|307679257|gb|GL456470.1| GENE 68 75511 - 76557 719 348 aa, chain + ## HITS:1 COG:L0314 KEGG:ns NR:ns ## COG: L0314 COG1459 # Protein_GI_number: 15674104 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulF # Organism: Lactococcus lactis # 9 344 24 353 357 189 35.0 1e-47 MGLLQKKRIFKPSNKLTKKQQQLFLKLLADLLANGFNIQESFSFMKKSNALPQHSITFLV EGFSSGIALQALVEELGFSTMVSAQLSFATAHGDLVGTLQAISEHFFQTEKYRQQFYKII SYPLLLIVFLILVIVGIRQFLLPQLMENDANSYSKNIGILLIVYSPYILVTLVFVLSFSF FILNRYLKHQSAIQRAFIYLKLPIIRGLYREYVSAFFALEWGKLLAQGLEMKEVIDLMRH TTNYPLMKELAGAISEGLLVGETLHRQLAAYPFFTKALGLMIQQGEVKGKLGKELMVYSN VCFQVFFKKIERVITLVQPFIFIIIACLIIGVYGAMLLPIYGNMEGVL >gi|307679257|gb|GL456470.1| GENE 69 76557 - 76832 376 91 aa, chain + ## HITS:1 COG:SP2051 KEGG:ns NR:ns ## COG: SP2051 COG4537 # Protein_GI_number: 15901871 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Competence protein ComGC # Organism: Streptococcus pneumoniae TIGR4 # 3 86 9 92 108 84 63.0 6e-17 MKKKQKYAGFTLLEMLIVLLIISVLILLFVPNLAKHKETVDKKGNEAIVKIVESQIELYT LEKNRTPSLNELVKEGYITKEQLDKYTAEKQ >gi|307679257|gb|GL456470.1| GENE 70 76829 - 77272 190 147 aa, chain + ## HITS:1 COG:no KEGG:MPTP_1391 NR:ns ## KEGG: MPTP_1391 # Name: not_defined # Def: late competence protein ComGD, access of DNA to ComEA # Organism: M.plutonius # Pathway: not_defined # 6 134 10 134 134 77 37.0 2e-13 MNKSAGFTLMETLASLTIVCFMTMLPTLAIHRWQETLKIEQFLATVEKQLRFAQQQAIVL EETQEVWFFEEQQSFSFPDKLNQSARRTSLAVPEKMTVSGPSKLSFLHSSGNNGRLVKYI FTWTEKKQQLILQFQMGSGRAFIYQWF >gi|307679257|gb|GL456470.1| GENE 71 77300 - 78448 651 382 aa, chain - ## HITS:1 COG:BS_ydcL KEGG:ns NR:ns ## COG: BS_ydcL COG0582 # Protein_GI_number: 16077547 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Bacillus subtilis # 63 379 49 368 368 113 25.0 8e-25 MAKLNWSKKYKYVFSYSNKKGTFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQY DLETQNTSFIENKQLTIDEWIKVWIPYAQDNWSVSTKQNIESAIKFHISPLIGNQKLSSL NKITYKREFIDKLRQENKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKFDLSNNV RSFSKKELQRFIAVLENEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLNEKYFDINSTR GDYGENKPKTKTSIRKVYFDNSLLTLIKKYKNHEKERLFREGIILSDKDYFILSSRNLPI KQSRITYMFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVY SDVLKEEEKETADMMDKLIENL >gi|307679257|gb|GL456470.1| GENE 72 78523 - 78852 419 109 aa, chain - ## HITS:1 COG:no KEGG:LCABL_12950 NR:ns ## KEGG: LCABL_12950 # Name: not_defined # Def: prophage Lp2 protein 7 # Organism: L.casei_BL23 # Pathway: not_defined # 2 106 3 110 116 102 48.0 4e-21 MKKIKYFIYTLLLLIVFTACGTKEVKPDYTSKEAETALNNGEDLTGKTVQFTVDKYVPDG SLGYTIQTGDHLNFVSSKNPDVRTGDKVIAKIKKVENLMGSWIITFDKK >gi|307679257|gb|GL456470.1| GENE 73 78867 - 79631 548 254 aa, chain - ## HITS:1 COG:no KEGG:EF2795 NR:ns ## KEGG: EF2795 # Name: not_defined # Def: LysM domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 183 254 286 354 354 85 68.0 1e-15 MKKIVTLSLSLLLLTACSNETKQVSKQNSSSTTITSEKKDISDSKKINSSSSESSTIHYS STQTDETTQMELGGSTYSQILETYTQKLTTTTPILIEELRNEGEPIKGNVSALAEVLNSK IGKLADISNAGISEMASIQLSNKDDYSLYESWANKLTDVYTAEANKLTDLYTELAAVNTE ISTSQQPLPSTQSSSAIEQPQSSEVEQPVYDKVRSGEGARQVAERNGLTLEQLFALNPGI DTSVFYPGQPLRIK >gi|307679257|gb|GL456470.1| GENE 74 79749 - 80387 275 212 aa, chain - ## HITS:1 COG:no KEGG:EF2041 NR:ns ## KEGG: EF2041 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 212 4 215 216 391 96.0 1e-108 MYLDYDTYFEYHDQTYIIIEKVANYYGIELKELRWKHYKDYMIDVENVDIIPYSFGDVSR KIFSGNIIRFHDKCGISYNSTMVKGRQNFSILHESAHYFFDMNKECKSQSFSDLITGKGY TSEDEPKEIRANIFASLALINNEALKECLQKQMSFRQICEEFEMSAAALYVRLYDFLTKI FLLNTCLARSAINQYRYNYDSTKLISYVKMVL >gi|307679257|gb|GL456470.1| GENE 75 80400 - 80744 347 114 aa, chain - ## HITS:1 COG:lin2607 KEGG:ns NR:ns ## COG: lin2607 COG1396 # Protein_GI_number: 16801669 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 1 112 1 107 107 73 42.0 6e-14 MTTFERIKNLAKQKDKSLQQVARELKYGENYFYSLNAGKQPTAEKLQEIANYFNVSVDYL LGRTDNPNSDNLEEDEIATFFRVNTEDLTESEKDQLREELKEYLEFMKSRLKNK >gi|307679257|gb|GL456470.1| GENE 76 81035 - 81226 214 63 aa, chain + ## HITS:1 COG:no KEGG:EF2039 NR:ns ## KEGG: EF2039 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 63 1 63 63 84 71.0 1e-15 MPDTSVSRQKIRDYFESKGISLVSVATYFDIPRQDLIDYLNGKNKSKKAHETLLAIIDFY KIR >gi|307679257|gb|GL456470.1| GENE 77 81238 - 81549 208 103 aa, chain + ## HITS:1 COG:no KEGG:EF2038 NR:ns ## KEGG: EF2038 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 103 1 103 103 183 98.0 2e-45 MENFLDTSSKNFLYNIIEKILRKMFEQVINEASQGLNERAEYLDIKQLSSRYSMSVPEVE QNFVKDKRMQIIEKRKPGTSKGKRYWPAKEAIKICNDIMNHWD >gi|307679257|gb|GL456470.1| GENE 78 81588 - 81680 114 30 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDNLVIMKNQQAVTTSLQVEQRLIKIIVMF >gi|307679257|gb|GL456470.1| GENE 79 81788 - 82309 391 173 aa, chain + ## HITS:1 COG:no KEGG:EF2037 NR:ns ## KEGG: EF2037 # Name: not_defined # Def: antirepressor, putative # Organism: E.faecalis # Pathway: not_defined # 1 172 68 239 240 309 94.0 4e-83 MNRDGFTLLAMGFTGQKALKFKLKYIEAFNQMEELLKTQSNLPINNTELLLEAALKHERG LTLVNQRLDKLETETTINRSQQRKIQGLVSSTVIKVLGGKKTVAYRDSSIKQSAFSNCYK QLKALFDVASYVDIPKVRYKEALTLIPKWKPDLELQARIDMANGNGDMFKEVS >gi|307679257|gb|GL456470.1| GENE 80 82349 - 82531 183 60 aa, chain - ## HITS:1 COG:no KEGG:EF2036 NR:ns ## KEGG: EF2036 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 60 1 60 62 79 88.0 3e-14 MFFVIKRASDKKYYFLIKTEENEIIASSKTYYYKSSVLEIIESIKNDMNPKAIIVDTTFN >gi|307679257|gb|GL456470.1| GENE 81 82584 - 82778 218 64 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229545380|ref|ZP_04434105.1| ## NR: gi|229545380|ref|ZP_04434105.1| hypothetical protein HMPREF0349_0597 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis CH188] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9514_01536 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9509_02925 [Enterococcus faecalis TX0411] conserved hypothetical protein [Enterococcus faecalis TX0635] hypothetical protein HMPREF0349_0597 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis CH188] hypothetical protein [Enterococcus sp. 7L76] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_02925 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9514_01536 [Enterococcus faecalis TX0855] conserved hypothetical protein [Enterococcus faecalis TX0635] conserved hypothetical protein [Enterococcus faecalis TX4000] conserved hypothetical protein [Enterococcus faecalis TX2141] conserved hypothetical protein [Enterococcus faecalis TX4244] conserved hypothetical protein [Enterococcus faecalis TX0043] conserved hypothetical protein [Enterococcus faecalis TX0645] conserved hypothetical protein [Enterococcus faecalis TX0630] hypothetical protein HMPREF9520_03430 [Enterococcus faecalis TX1467] # 1 64 1 64 64 123 100.0 3e-27 MKAIRETRLVGAFLLMIVLGVLLKSHFSMPILATLSAPFFIHWFFNWDEAKYQYSKKGGD KKCM >gi|307679257|gb|GL456470.1| GENE 82 82769 - 82954 293 61 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229545381|ref|ZP_04434106.1| ## NR: gi|229545381|ref|ZP_04434106.1| hypothetical protein HMPREF0349_0598 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis CH188] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9514_01537 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9509_02926 [Enterococcus faecalis TX0411] conserved hypothetical protein [Enterococcus faecalis TX0635] hypothetical protein HMPREF0349_0598 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis CH188] hypothetical protein [Enterococcus sp. 7L76] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_02926 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9514_01537 [Enterococcus faecalis TX0855] conserved hypothetical protein [Enterococcus faecalis TX0635] conserved hypothetical protein [Enterococcus faecalis TX4000] conserved hypothetical protein [Enterococcus faecalis TX2141] conserved hypothetical protein [Enterococcus faecalis TX4244] conserved hypothetical protein [Enterococcus faecalis TX0043] conserved hypothetical protein [Enterococcus faecalis TX0645] conserved hypothetical protein [Enterococcus faecalis TX0630] hypothetical protein EF62_2396 [Enterococcus faecalis 62] hypothetical protein HMPREF9520_03429 [Enterococcus faecalis TX1467] # 1 61 1 61 61 97 100.0 4e-19 MYVAIGEASRETYVIGETQAEVMRKLFEEYPYVSADKNVYPERLSIVQKEPRTSANEQGK Y >gi|307679257|gb|GL456470.1| GENE 83 82998 - 83321 392 107 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229545382|ref|ZP_04434107.1| ## NR: gi|229545382|ref|ZP_04434107.1| hypothetical protein HMPREF0349_0599 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis JH1] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9514_01538 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9509_02927 [Enterococcus faecalis TX0411] hypothetical protein HMPREF0349_0599 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis JH1] hypothetical protein [Enterococcus sp. 7L76] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_02927 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9514_01538 [Enterococcus faecalis TX0855] conserved hypothetical protein [Enterococcus faecalis TX4000] conserved hypothetical protein [Enterococcus faecalis TX0645] hypothetical protein EF62_2395 [Enterococcus faecalis 62] # 1 107 1 107 107 177 100.0 2e-43 MNDKIQNLLMELVKECRKGKVAIVLSTVDSEMMEASSVLLAGSLPEQAIAFSELFEKFKE EALAHDCDCPQCKQIKESFIGAESSSTKQNNEEKLDILLKDFLRGEL >gi|307679257|gb|GL456470.1| GENE 84 83321 - 83548 251 75 aa, chain + ## HITS:1 COG:no KEGG:EF2843 NR:ns ## KEGG: EF2843 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 73 1 73 74 105 68.0 8e-22 MIEVRGLGNDIYELMLANAQNNIIQSVRTSASYGNTSCVVSSKGATKPFLDQLQMQGVDY IELEDEKIKLFWEGL >gi|307679257|gb|GL456470.1| GENE 85 83548 - 83649 164 33 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPEFDSLGARQEPPEEKEVLELTWEYDEEEDER >gi|307679257|gb|GL456470.1| GENE 86 83646 - 84590 967 314 aa, chain + ## HITS:1 COG:BH3544 KEGG:ns NR:ns ## COG: BH3544 COG5377 # Protein_GI_number: 15616106 # Func_class: L Replication, recombination and repair # Function: Phage-related protein, predicted endonuclease # Organism: Bacillus halodurans # 5 313 10 317 320 274 46.0 1e-73 MIQSTLSMSHQEWLEDRRKGIGGSDVATILGLNQYKSAYQLWLEKTGQVELKDTESEPAY WGNVLEEVVAKEFQERTGKKVRRRNQVFEHSLHPFLRANIDREVVRENAILECKTANQFL AKEWAGDEVPLSYLCQVQHYMNVLNKDYCYIAVLIGGQKFIWKRVERDQELIDVLTEQLV DFWENNVIKGVEPIIDGSKATADFLKDKYSDIEETQTTLPASFDELLDQKNEMKKTKKEL DVAIRKIENEIKSELGKRNASIGITKKHIVEWKEIPTKRLNSKKFAEKYPQIAEDEEIYM VTTPRRLIEKEIKQ >gi|307679257|gb|GL456470.1| GENE 87 84590 - 85483 1029 297 aa, chain + ## HITS:1 COG:lin0085 KEGG:ns NR:ns ## COG: lin0085 COG3723 # Protein_GI_number: 16799163 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecE pathway) # Organism: Listeria innocua # 1 253 1 239 271 255 54.0 6e-68 MATNETLKNQLSQQNQKQVPANQLGLKGLMNTPTMKRKFEEVLHENANAFMSNVMTLVSN DSYLAESEPMSILSGALTAATLNLGLDKNLGYAYLVPFNTKNKQTGKWERKAQFILGYKG YIQLAQRSGKYKALNVIEVYEGELLSWNRLTEEFEFDPNGRQSDDVIGYVGYFELLNGFK KTVYWTKQEIEAHRIANSKDKEKTKLSGVWATDYNAMARKTVLRNMLSKWGILSIEMQEA TTSDEKVQQMQEDGNIISETEVEENTTMKTAEVINEADSDSLNQTDLFDTKNPPLDK >gi|307679257|gb|GL456470.1| GENE 88 85520 - 86521 712 333 aa, chain + ## HITS:1 COG:no KEGG:EF2130 NR:ns ## KEGG: EF2130 # Name: not_defined # Def: DnaD domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 274 1 257 283 302 60.0 1e-80 MARPYKQGVDYYSLDVDFLKDIKYRKIRKSCGPQTCEILLCLLSYIYGDMGYFLRWDEDS AFLVADDVGAKEGLVEEVVNKAVQVGFFDHDKYQKYKILTSNGIQKRYKLMTSKRKEVVL QEEYLIIDGNNSLPTVVNDVNNSPSTVVNGVNNTQREKERESKVNKSKVNKKETESSINP SLPETSVEKAFFEEPLGEEKLTELIRYYSQNVSPATPVNITDLQYDLSDFDGDLELLKEA VNICARNNERRYSYFAGILKNWRANGVKTYADYLNNERERADKKTQNKQYQNKPVRQEKV PEWMNQANGEEEKLSPEEQAEFERQMQELLGGE >gi|307679257|gb|GL456470.1| GENE 89 86525 - 86827 399 100 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229545388|ref|ZP_04434113.1| ## NR: gi|229545388|ref|ZP_04434113.1| hypothetical protein HMPREF0349_0605 [Enterococcus faecalis TX1322] conserved hypothetical protein [Enterococcus faecalis ATCC 4200] hypothetical protein [Enterococcus phage phiFL3A] hypothetical protein HMPREF9521_01590 [Enterococcus faecalis TX2134] hypothetical protein HMPREF0349_0605 [Enterococcus faecalis TX1322] conserved hypothetical protein [Enterococcus faecalis ATCC 4200] conserved hypothetical protein [Enterococcus phage phiFL3A] hypothetical protein HMPREF9521_01590 [Enterococcus faecalis TX2134] conserved hypothetical protein [Enterococcus faecalis TX4000] # 1 100 1 100 100 167 99.0 3e-40 MIEMRVLDYRITSDDRQVIVNKARRNEHGELTILTDKDGTEKESLALIGYYGNLSKALVA IERDYVLSSGKTIQTVKEYKKELESIHSKLKRELDFGEEF >gi|307679257|gb|GL456470.1| GENE 90 86828 - 87127 437 99 aa, chain + ## HITS:1 COG:no KEGG:SH1788 NR:ns ## KEGG: SH1788 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 99 4 102 104 101 54.0 9e-21 MNELVKLVEEWAKEKRLDKAEPEKQMLKVIEEVGEVGAALARNNENDLRDGIGDVVVTLI ILAMQKNMDLYECLNQAYSEIKNRQGEMVNGVFVKEADL >gi|307679257|gb|GL456470.1| GENE 91 87145 - 87570 358 141 aa, chain + ## HITS:1 COG:lin1248 KEGG:ns NR:ns ## COG: lin1248 COG4570 # Protein_GI_number: 16800317 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvase # Organism: Listeria innocua # 1 141 2 140 145 85 35.0 3e-17 MRIILPIEPKPQSRPRFARRGNYVQTYEDSAMRAYKQKVKAYLRKAKPELIEKGAIFAHV TFYVPAPKYLLSSKKKRLEVELERKYCDKKSDLDNYFKAVTDAAEGILYKNDGQIAVMVC QKLYSMRPRTELEITSLEEQV >gi|307679257|gb|GL456470.1| GENE 92 87630 - 87746 81 38 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIKFKEFNIQLFDVHIYIKRLSSFKTNKNSIKKLTSFR >gi|307679257|gb|GL456470.1| GENE 93 88477 - 88893 307 138 aa, chain + ## HITS:1 COG:no KEGG:EF2024 NR:ns ## KEGG: EF2024 # Name: not_defined # Def: ArpU family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 138 1 138 138 238 97.0 5e-62 MILLLKEVDFRQTKANARNVLKNFRRLERIAGRSLIDLKSPIITDMPKSQSHGNKAEDAL VQLADAEAERDAILSALMALSLTSRQILHYSFCVQDHYSNYKIAREVGYSERSIQRMKSE ALIEFAEAYRNGKLIAYK >gi|307679257|gb|GL456470.1| GENE 94 89060 - 89194 59 44 aa, chain + ## HITS:1 COG:no KEGG:EF2023 NR:ns ## KEGG: EF2023 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 42 55 96 96 67 85.0 2e-10 MESPVLSVSFSLGSKYCNKLGIKLTRRRTLKALVKIALCKFKLQ >gi|307679257|gb|GL456470.1| GENE 95 89887 - 90120 137 77 aa, chain + ## HITS:1 COG:no KEGG:EF2021 NR:ns ## KEGG: EF2021 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 23 75 1 53 55 95 84.0 5e-19 MKSYWYVSLTHKYPQPNRSTGSMRVVMSVQIKKNASIVEMTREATPKEIDDCKLVYCGHG YFDEKNIQDNIKRNMRN >gi|307679257|gb|GL456470.1| GENE 96 90264 - 90842 239 192 aa, chain + ## HITS:1 COG:no KEGG:Spico_0824 NR:ns ## KEGG: Spico_0824 # Name: not_defined # Def: putative phage-related protein # Organism: S.coccoides # Pathway: not_defined # 3 183 2 183 188 92 34.0 1e-17 MRLDDKDIRRVIIERLQSYKNCQVYEEVTVPSGKARADLVAINGHVTAYEIKSDFDSLKR LSSQITEYDLNFERNYVVVGEKYVESVAYIVPKYWGIILVSGEELNALKIRFIRKARLNP NISFSNFMSLLSSNQIKFLAKQLSVFTKEYSKTEIQKMFKQDLVEKIDSTISMTAKNNLK KRIRENLKKEAF >gi|307679257|gb|GL456470.1| GENE 97 90880 - 91797 534 305 aa, chain - ## HITS:1 COG:no KEGG:CMS_0812 NR:ns ## KEGG: CMS_0812 # Name: not_defined # Def: putative phage-related protein # Organism: C.michiganensis_sepedonicus # Pathway: not_defined # 128 304 176 372 378 70 24.0 1e-10 MYYSTIRSKEGELRALEKLYETGNNLDNFIPNIIVSDGSEEILNLINRKFPLFSLLDIRE LDADNIEALEELLKKQEYSNHAIVYPIDILLEPMDNEIICEYVRIPKNSINRFLLQWLVS NKNLLPKNIFIDFEDIDDKISSQLIEIVIDLIDSLPEIDFIILSGAVPSTIPVKSTENYR LERYEKELFNHINDSTMSNSYYGDYTTISPIPISTDGPIIPIVQLKYTLENYYWFVRNGQ RRGNYDFVSVCKEIAHNVPSFNPEYCWGDEYIQSVIDADVNKGNPSVWVSVCVNRHIQMC IDEFS >gi|307679257|gb|GL456470.1| GENE 98 92066 - 92869 849 267 aa, chain + ## HITS:1 COG:lin1733 KEGG:ns NR:ns ## COG: lin1733 COG5484 # Protein_GI_number: 16800801 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 245 1 260 294 164 42.0 2e-40 MARKRDPRRDKAKKIWLESNGDKQLKEIASELNVSDSQIRKWKSIDKWSAELKGNVTNAK GNVTNRGGAPFGNQNAVGNKGNSRASPPLGNKNAIKTGEYETIFADMLSDEEKDIYSNLN DDPFFILNDEIRLLKVRQFRMMKRIKEAEKGLNDEEVERLQQLRKIKTPIEKDGRKLEIK REVMQDVQVTRKTFRKLDDILAIEDALTRISNQLTKAVKQQNALLANDAKLQLLKVQTEK AKASLGATSGDMDMPVFIDDISGDGYE >gi|307679257|gb|GL456470.1| GENE 99 92856 - 94130 706 424 aa, chain + ## HITS:1 COG:lin0105 KEGG:ns NR:ns ## COG: lin0105 COG1783 # Protein_GI_number: 16799183 # Func_class: R General function prediction only # Function: Phage terminase large subunit # Organism: Listeria innocua # 14 421 24 443 443 140 26.0 5e-33 MDMSKKLSEFLPKAFHTTWRVALNSNILHVVEKGGRGSGKSSGIAHIIVQLIMRYPVNAV AIRYVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMKITYKPRGNYIVFRGAQNPERIK SLKDSRFPFAIAWIEELAEFKTEDDVKTITNSLLRGELADGLFYKFFYSYNPPKRRQSWV NKKYESSFQPENTFVHHSTYKDNPFIAQAFIEEVNATRAKNPKRAEWEYDGKAIGSGVVP FDNLRVIKGCITDEMAANFDNIRNGLDFGYATDPLAFVRWHYDKKKNGIYAIDEIYGVKI SNREFANKAKSKGYISDRIAADSAEPKSIAELNSEHGMPRVFGVKKGPDSVEYGEEWLGD LDFICIDPLRTPNIAKEFENIDYQTDKDGNPKPRLEDKDNHTIDATRYAFSEDMDKNNVR FIQY >gi|307679257|gb|GL456470.1| GENE 100 94142 - 95629 1131 495 aa, chain + ## HITS:1 COG:no KEGG:EF2016 NR:ns ## KEGG: EF2016 # Name: not_defined # Def: portal protein # Organism: E.faecalis # Pathway: not_defined # 1 494 1 489 490 840 90.0 0 MFQNNLSLKRYKRVRTKYSTQINEEVFDPNDFITEMKPFFDDRERKYKAYTSEQNEIDRR PKPNTEIIKVNNKLHAGLYNTIIDQAADHFTGIPIKWDYDITEQRKSILQKMGSKVKDLF SGNVRNETKTPEEFDRLTELVNDMRFAMLDSDTARFQGACGVAFRLLEPVETVEGWQLWA SNIEPWKAEKYENADIFIREKYDTHQKKFFEEMKVITKKRICIYSRYVESNLVSASGTFK LIEEVENPLETFYLSEFKNNTNRYCDFEVAEELSDAFDRSLSDQQNEVEQFKLAYMAISG SRLDEKEAQRMMEQLGIINLPDPQAKVGYVTKDINKDFNEYHLDKLKKLYYTVTKSIDFN DEVFKSNSSGEARKWQIIALEAKTNTKEQYFKEGLKEAAETMSAFIKFRDKLDVDVSKIV FTFSRSLPTDIGYLADALPKLSPFVSKRTIINQIPFVKDPDYEMDLMNLEQGQDYPSGEY DELGGAGNDEEENNG >gi|307679257|gb|GL456470.1| GENE 101 95604 - 97361 1040 585 aa, chain + ## HITS:1 COG:no KEGG:EF2015 NR:ns ## KEGG: EF2015 # Name: not_defined # Def: minor head protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 347 1 347 634 648 93.0 0 MTKKKTTASERYWEKRRGLEDKARLKLEKKTLNELESVFERALVKIQRQLLSQADLHDIT QSEMLEDFSKRDQEKYRKYIEKNYEKLMESDEAYKQFIDEYFPSFDYAKVNRLLQLRADI FSTLAGEAISSDVNGKFNNDLENITKRIYNSNSNTLMQLLGGSAPGLSKKELENILNYPW SGKTFSSRLWGNISSLEQRLSNSIINSLASGEGVLEALRTMKNDGVVSGMFKLEQGKFNR SIENLVRTEYSHFAVEGVRKSLKDVGIKQTQSWSAEDERVCSICGRRHGKEIKDDWHPPY HGRCRCTEIPMVPEISDDIDKLYEEMFGDLLDEFASKQWGIKLNHPKSTTIANRFSLSKL TEENIGDTERINDIINRTKDVISNYKNETGIDVIKLFEDKKFADKNNPYTDEKSKFIRYL LKNNGFDGLPQKVTDVDDLIPVYRGIVDFKYGDDTSQDQIDRFLRSHFDISGARSSANGR GSYFTSAKFKAQEYANNGNNGQLITAYLLEKINLLDDSIFLKEREAFRKIADNFGEDAKY YAFLLSKNFLMDTQKDIYALISGYDGIQKGAIYNILNRTMLGVKK >gi|307679257|gb|GL456470.1| GENE 102 97370 - 97579 167 69 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229545402|ref|ZP_04434127.1| ## NR: gi|229545402|ref|ZP_04434127.1| hypothetical protein HMPREF0349_0619 [Enterococcus faecalis TX1322] hypothetical protein HMPREF0345_1861 [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis HIP11704] conserved domain protein [Enterococcus faecalis TX0855] conserved domain protein [Enterococcus faecalis TX0411] hypothetical protein HMPREF0345_1861 [Enterococcus faecalis ATCC 29200] hypothetical protein HMPREF0349_0619 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis HIP11704] hypothetical protein [Enterococcus sp. 7L76] conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX0855] conserved domain protein [Enterococcus faecalis TX4000] conserved domain protein [Enterococcus faecalis TX0312] # 1 69 5 73 73 111 100.0 1e-23 MQHLEFSFGSLNGDYSEQTLENFEYMFNRLEEDNLGYVHFDNVSEFYFNGITNEDKRVLK ETIIANSKK >gi|307679257|gb|GL456470.1| GENE 103 97620 - 97964 335 114 aa, chain + ## HITS:1 COG:no KEGG:EF2013 NR:ns ## KEGG: EF2013 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 9 114 1 106 106 196 94.0 3e-49 MLKFGGEVMKGLFEAVLNLEVTNGTEKAYKKVFEQENERYLTKHTLRDGNGNIVKDGLES VWSGNYCHVDILYSIPGRKSKLTISIVSRTLQNVKDAVTDYQMLGAELVHKNWK >gi|307679257|gb|GL456470.1| GENE 104 97969 - 98052 157 27 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDPYDYLDADYEEHLLREEKQLKSDES >gi|307679257|gb|GL456470.1| GENE 105 98182 - 98805 741 207 aa, chain + ## HITS:1 COG:no KEGG:EF2012 NR:ns ## KEGG: EF2012 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 207 1 207 207 298 96.0 1e-79 MKPNLLPMDLQMFAEGEGATDFTFDDFKAFVESNEEAQKFVQSQSQSAADKQLEAWKQNN LEKIKETTIKEYEESKKNKTPEQIKLEELQAEFEAEKALRVTSDNKAFVAEKIAGLDWDG DLKDSISQFMLNNLVSSDTEFTKKAVEGFTELLEAINDKHAEAIKNVEMTKAFGNKSQQT NMVTGNQTKSFENPEAALGQKLQAFID >gi|307679257|gb|GL456470.1| GENE 106 98819 - 99706 999 295 aa, chain + ## HITS:1 COG:no KEGG:EF2011 NR:ns ## KEGG: EF2011 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 295 1 295 295 548 99.0 1e-155 MKKSSLNNLEYLDISQEVNALQVPNTPFLSYLLGAGKVEAAKSTEIKWREYGMNNDDSSA QLEGGEYADAESDRTWFNNYTEIFRKSTSVSGTLDAINVDGVGNELNSQVALRATEMKID LNRKLIVGVKADESGSKGRQMNGILNLISSTNKVETAAAGAVTRKDIDALFKTMFQKGYM GEKLCLVAPDMQELMTDQLDEKSTKIVQFGDKLTFGLQLGNIVSNYGSGIALIEPNLPNG TIAAIDTNYVKLRPLREWRAEELAKTTDSRRIGLVGEYSIEYKASNSGAILNLKA >gi|307679257|gb|GL456470.1| GENE 107 99735 - 99917 420 60 aa, chain + ## HITS:1 COG:no KEGG:EF2010 NR:ns ## KEGG: EF2010 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 60 1 60 60 91 98.0 9e-18 MATAKKEVTYRVLDKKNFVGFMHPKTKKFITANENNEFVVSEDDKEAIEILERAADTFKV >gi|307679257|gb|GL456470.1| GENE 108 99931 - 100275 286 114 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229545407|ref|ZP_04434132.1| ## NR: gi|229545407|ref|ZP_04434132.1| hypothetical protein HMPREF0349_0624 [Enterococcus faecalis TX1322] hypothetical protein HMPREF0345_1866 [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis CH188] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9514_01563 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9521_01572 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9509_02951 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9512_00565 [Enterococcus faecalis TX0635] hypothetical protein HMPREF0345_1866 [Enterococcus faecalis ATCC 29200] hypothetical protein HMPREF0349_0624 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis CH188] hypothetical protein [Enterococcus sp. 7L76] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_02951 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9521_01572 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9514_01563 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9512_00565 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9496_02457 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9497_00013 [Enterococcus faecalis TX4244] hypothetical protein HMPREF9508_00392 [Enterococcus faecalis TX0312] hypothetical protein HMPREF9517_01915 [Enterococcus faecalis TX1341] hypothetical protein HMPREF9511_03130 [Enterococcus faecalis TX0630] hypothetical protein EF62_2371 [Enterococcus faecalis 62] conserved domain protein [Enterococcus faecalis TX1467] # 1 114 1 114 114 193 100.0 4e-48 MVDEKKEEIVEKIQLMLPNASEDRILSVLNLVIFEINSYNTCKIDIAWDEFEQLIIEVIY KALKNEIDKSVASVKRGDTSISYVVESKDIQSLMKNYSSAIKRILGCDSGVFFY >gi|307679257|gb|GL456470.1| GENE 109 100272 - 100640 629 122 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229545408|ref|ZP_04434133.1| ribosomal protein L23 [Enterococcus faecalis TX1332] # 1 122 1 122 122 246 99 4e-64 MNEAEILAATYFDTCVIERMSDIENTESGITEQVYFPIHVGKLPCAFSQGSMGNLPVIEN KEAFNISYEEQKLFLEPNIKVKKGDRITITQGTGQKHVLFSKKPFYYPSHIEVVLSGSSI DE >gi|307679257|gb|GL456470.1| GENE 110 100633 - 101031 391 132 aa, chain + ## HITS:1 COG:no KEGG:EF2007 NR:ns ## KEGG: EF2007 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 132 1 132 132 227 100.0 1e-58 MSKSDLRMKSNADKVIANLKKMTPIAEKEGAAMVNDSLAKIYQLIVPMTPIKSGDLRRGY RIIKARKLSSGRIVGALINNEKYFRYVNDGHRTKNGGFVKGRFMLQKSNKLANATYIPKR FKQMAIIIVKKG >gi|307679257|gb|GL456470.1| GENE 111 101034 - 101408 266 124 aa, chain + ## HITS:1 COG:no KEGG:EF2006 NR:ns ## KEGG: EF2006 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 124 1 124 124 220 95.0 1e-56 MYDKILKMLTDTIKQFSNAPIYLDDVMQSSEPFYFVLSLEESLTDNVGQNVQNKAYNVDI ALVDSKKDKQLVTSLTESCGAFFNVLNLDGNELFPEDYQTFKTDGIQHINFNVAFPQLIE WSEK >gi|307679257|gb|GL456470.1| GENE 112 101409 - 102257 1095 282 aa, chain + ## HITS:1 COG:YPO2116 KEGG:ns NR:ns ## COG: YPO2116 COG5492 # Protein_GI_number: 16122351 # Func_class: N Cell motility # Function: Bacterial surface proteins containing Ig-like domains # Organism: Yersinia pestis # 198 279 224 305 306 63 46.0 4e-10 MAKMKNVSVISVEKPTWFPLKDETGAFPVYGTPITIGTAVSIKPDVTTETTPDYGDSVVQ DQYVAFGGAEVTLETNGYQNEVLAEITGGKKLKGGVLRSADDIASDGAFAYRRRKSNGKY RYTIFYKGKFALTSDETSTLEGSSVSYTHPEWTGSFVDVPGLGYMYSVDEDDEGVDLEMI KNWFTEVMDPRKENTTAVTGVTLDQTELNLKVGQTATLTPTITPDNASNKKYQFRSESEA IGTVTPIQGKVTAVGEGTTEIVVTTEDGNFTAKCTLNVTTAD >gi|307679257|gb|GL456470.1| GENE 113 102310 - 102660 561 116 aa, chain + ## HITS:1 COG:no KEGG:EF2004 NR:ns ## KEGG: EF2004 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 116 1 116 116 203 99.0 2e-51 MASKFQQKIKLMIKDGSKYTTKQFMSAEFLPGSVMDTGTDLQIRLEEATKTNDMEAIRPI LRECYDFIADVIFEKQFTGQEYIDGMDARELLKITAQLLGSVTSGYDAIYSEQKKK >gi|307679257|gb|GL456470.1| GENE 114 102881 - 105805 2704 974 aa, chain + ## HITS:1 COG:BH0960 KEGG:ns NR:ns ## COG: BH0960 COG5412 # Protein_GI_number: 15613523 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Bacillus halodurans # 379 890 95 494 584 94 23.0 1e-18 MNNEDLVLKMILDESGFSQGLNSAVKKLQGFDVEVDRTGQKGGRSLGSIWTSFVGNFLAS GATKIISKGIGLITSNIDGAINRVDTLNNANRVFENMGFSAGETSKTMDSLKKSIQGLPT PLDSAIKGVQLIASSTNDLGKSEQIFAALNNGILGFGGSAEMVENAIIQLSQSFSNGKVD AQTWNSMINSGLGPALNALAKQMGLTAGQMKEGLSDGSISVEEFQDALIKLNKEGGGGLK SLEQIAKDSTAGIKTGLANMKTAIVRGVANVVTKIDEGLKSAGFGSISEIIADKGAKMEA ALSKFAEMIPPMIKTAKTLYDTLKPYAPLLAGLAGSIGTLMLVNKVNAAFKAWREGTEAL SIAQAILNKTMLSNPFVAILTAVVGLVTAFIYLWKTNEGFRDAVKNIWKNIQEVISSAAD VVVKAWNSTMEFFSNMWDGTKEAFSNAGTWMKEAPGNAADWVKNKWNGTKEFFSGLWNST KEGSKNTWENIKQSAADSAKSVGESFKNGFDNVKDWFKGVGKSISDVFTTAFDFVWKYIG PYVTGIKNAFKMVVNAMKANIENVKMIAENVVTILKNVLLAPILFITSMITGGWEEAKEN MIAVWDNIAEAAQTIWFGIKNIFYNTVTAISYSVTSIFNGLMLTIKKIWIDVKLFFTLLW IDIKYGAINVWIEIKYSIIETWINIKFEAIRIWESLKTWFFETVENIKNGVIDGWNSLKQ GTVDTFNATVQWSKDTWNNFKQWIVDLVTGIKDGIINGWENLKQGTVNIFNNLVQGAKNA WNNLKRSVSDTVENVKQTFNDMRHIDLFEIGKNIIQGLVNGIGSMIGAVNKKIKEVAGNI KEKIKGALGIHSPSRWMRDMIGKNIVLGVVAGIDQEKGTLDKSVKKMTDLPTELPNFSTT GRYINQQGAQTESLAKNKGNATTNIGGDTFNINIQAMGKLNEKQLMDMAKDLVKYIQIVK NRDSDATGGAFGGI >gi|307679257|gb|GL456470.1| GENE 115 105774 - 106529 441 251 aa, chain + ## HITS:1 COG:L63101 KEGG:ns NR:ns ## COG: L63101 COG4722 # Protein_GI_number: 15673032 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Lactococcus lactis # 13 251 4 249 249 156 37.0 3e-38 MQRGVLLVEFKRGQFFLNGKHSSEFNVFMRERPERLSAGRVVELRERMGNDSIAVDFAYY KNVERTITCYAKANTLQEVSFLEDEISFWLDMGNYSDFIVYFDEHYIYQAIVTSPPKFTG TRKSGVLIPFEFTVSIRPFKKNRIGQYWISNPNQLINTEKYPSEPIIQILGSGDISFFIN NQSYSLKAINGDIIIDSEKQEAYRKSGGAFEILDHKTLFKDYPILKCGENNFRWTGKVTE FKVQPNWRRKV >gi|307679257|gb|GL456470.1| GENE 116 106526 - 109318 2556 930 aa, chain + ## HITS:1 COG:L63739_1 KEGG:ns NR:ns ## COG: L63739_1 COG4926 # Protein_GI_number: 15673033 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Lactococcus lactis # 1 751 1 727 727 490 39.0 1e-138 MIPVIFKPGEKDFSTNGLGRLVDATRCEITEEANGKYELEMDYPAISRFSDYFENGYQIK AKPNDLEEYHIFEIKQTFKDTFTNSIVIYAQSRTYKLGNRQVRLVTVDNRNGAEAMKLIE QNMDEPCDIKLYSDINTASSTTFEARNVLNCIAGEQGSLLQYWGGEIKREPFKLSLLRRR GRDNVGTVRYGKDLKGLTIKFDWQSIVTKVLPFAELQSGADGTSQRIYGNAVKSEYISKY PDVYAQYIQFTEDQGVKDIASLNKVASKYFTTLYPGSDKPKVSIELEIEKLTDSEEAKEF AKMRNYNLFDTFTVYHKLYDIDIQTKVTGIVYDALAEKTIKITAGDIQVAFYKQQSQDFQ EAIKTLTKKEYMSDFVDYITNLINGVEGGSILQYPKNRPNTHYYLDTESTDTAKDVIAIN NKGIGFSRTGWKGPFKNAWGINGVLNADFIGAGKIKSNIFETSFNSCGDILRMVNGTLQA WNNKKKIMELTKKGMEFWNGNSHVGTMGTKGNPFPGLADKHGNPVVSDGNSLLLVADNPQ KIIGLSNQSGTGHLITGPTQFFVGNNFNFFGPNGSKAILTVDRLIVGGKEVIPGQNGGGG SGAGTGGYPSEVTSDADKFAWDLWSYLLANGYSKAAAAGILGNVQGEVGPSMNPDTEQIG GPAYGWVQWDGSAYPLVGAPTWNGREYVQRLIAAAGIKQDYRTSLAQAQLINWCMFNGQW LGQVSPLTVDEFKVVSSPKTAAYAFELNFERPAAAHPERQTYAQVWYDKFKDLKASTATG KAGIEHLETLMGKWLGNGQCYAVPAEYSGFMGGCGLGAGTIYGFSHVIGDTSSAADIGEA YDWNAVGWRVIQNPTYQDLVVGAIVNIRRGGQWGTGWTVDPTYGHTGVIYGLNNGRIQTI EQNAEQGQIVAKYDRLYFANSIQSIVIPPK >gi|307679257|gb|GL456470.1| GENE 117 109337 - 110218 1027 293 aa, chain + ## HITS:1 COG:no KEGG:EF2810 NR:ns ## KEGG: EF2810 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 288 1 299 302 486 82.0 1e-136 MVKWQATLSTTEPYNYIGIQNVRQGNRNTEVLEAILVENAWPLDLTGCEVFFESVIDNKY PIQRSAKIVNAKKGIIQYTFDEYSMQSLHRQEAYFSIHKGDNLIGATQNFSYFVVNAASK TEGEMGSYWQSIEDLIADMNAFINENKGDFTDWMNARKEEFEAWRDAQKTDFTSWFESIK DILKTIDPGGTMLAELMDARVDIQGVRHNSISERLLADMEYLYQKLEKRLYTLEYGEISD LIILQDDAFSLNHETEIVGTVDYPAIDGALVIATVDDTKQNAYVFEKVGEISG >gi|307679257|gb|GL456470.1| GENE 118 110211 - 110807 790 198 aa, chain + ## HITS:1 COG:no KEGG:MPTP_1474 NR:ns ## KEGG: MPTP_1474 # Name: not_defined # Def: hypothetical protein # Organism: M.plutonius # Pathway: not_defined # 1 197 1 205 205 202 59.0 7e-51 MVKAKRMMETDENGVERQFYPITHASAVRGLEKIIAGQSKVLSVNGYTGAVIITKADLGL ENALTELPYATEETDGIITAEMFQRLSNGEGGVYILPIATADELGGIKVGQLLEITEDGT LSAVKQTDQNFTTELKSKLEELKGYTAGANISISEDGVISATGGGDGGGVNQQYVDQKVQ EAIDRIPDITFERVGEVE >gi|307679257|gb|GL456470.1| GENE 119 110804 - 111091 431 95 aa, chain + ## HITS:1 COG:no KEGG:MPTP_1473 NR:ns ## KEGG: MPTP_1473 # Name: not_defined # Def: hypothetical protein # Organism: M.plutonius # Pathway: not_defined # 1 95 1 80 80 85 54.0 9e-16 MTDIVKVKQGGTQVFPQTHWNAVEGKPEVLKGEKGDPGPQGPKGDKGDVGPQGPAGQNAT TTDVATSIKNGLMSKEDKTKLDGLPAITFEKVGEV >gi|307679257|gb|GL456470.1| GENE 120 111091 - 111582 608 163 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227519338|ref|ZP_03949387.1| ## NR: gi|227519338|ref|ZP_03949387.1| hypothetical protein HMPREF0348_2321 [Enterococcus faecalis TX0104] hypothetical protein HMPREF0346_2616 [Enterococcus faecalis HH22] hypothetical protein HMPREF0349_0638 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis HIP11704] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9514_01575 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9509_02963 [Enterococcus faecalis TX0411] hypothetical protein HMPREF0348_2321 [Enterococcus faecalis TX0104] hypothetical protein HMPREF0346_2616 [Enterococcus faecalis HH22] hypothetical protein HMPREF0349_0638 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis HIP11704] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_02963 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9514_01575 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9496_02188 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9517_01927 [Enterococcus faecalis TX1341] hypothetical protein HMPREF9507_01841 [Enterococcus faecalis TX0309B] hypothetical protein HMPREF9511_03118 [Enterococcus faecalis TX0630] hypothetical protein HMPREF9506_01252 [Enterococcus faecalis TX0309A] hypothetical protein EF62_2359 [Enterococcus faecalis 62] # 1 163 1 163 163 316 100.0 3e-85 MTTDIVQLKEKGKPVYLKTHTAAIDGLESYIKKIDADKAYQKITKKEPLWTGAWYGGAAG NGQVPSKSLSQCENGWILQWQEYTKEGALNGACYHFFLVPKQHAQNPGSGGVIFLLHGYY TNLVRKYLYIKDTKITGNDLNASSSDTAGSGSKMFALSAIYEY >gi|307679257|gb|GL456470.1| GENE 121 111596 - 111916 406 106 aa, chain + ## HITS:1 COG:no KEGG:EF1995 NR:ns ## KEGG: EF1995 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 106 1 106 106 140 100.0 2e-32 MKIWIDDIQGYLDGYSTMEQPNKIELEVEKEPTDFFNYRWDGTSLIYDPDNVPEPEPTPP TELELLQKQNAELMKQVSQQNQVIQQTQRMTGELMKQVAELTKGAE >gi|307679257|gb|GL456470.1| GENE 122 111918 - 112073 207 51 aa, chain + ## HITS:1 COG:no KEGG:EF1994 NR:ns ## KEGG: EF1994 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 51 1 51 51 97 100.0 2e-19 MKTNAFPGFDNIKQLYDWNCYTKQDLVDYVNMNCLTKEEYTKICGEPFSES >gi|307679257|gb|GL456470.1| GENE 123 112108 - 112329 263 73 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227555456|ref|ZP_03985503.1| ## NR: gi|227555456|ref|ZP_03985503.1| hypothetical protein HMPREF0346_2619 [Enterococcus faecalis HH22] hypothetical protein HMPREF0349_0641 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis CH188] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9514_01578 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9509_02966 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9512_00550 [Enterococcus faecalis TX0635] hypothetical protein HMPREF0346_2619 [Enterococcus faecalis HH22] hypothetical protein HMPREF0349_0641 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis CH188] hypothetical protein [Enterococcus sp. 7L76] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_02966 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9514_01578 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9512_00550 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9496_02185 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9497_01885 [Enterococcus faecalis TX4244] hypothetical protein HMPREF9517_01930 [Enterococcus faecalis TX1341] hypothetical protein HMPREF9507_01844 [Enterococcus faecalis TX0309B] hypothetical protein HMPREF9511_03115 [Enterococcus faecalis TX0630] hypothetical protein HMPREF9506_01249 [Enterococcus faecalis TX0309A] hypothetical protein EF62_2356 [Enterococcus faecalis 62] conserved domain protein [Enterococcus faecalis TX1467] # 1 73 1 73 73 133 100.0 5e-30 MNLTVEQWLAVITFLGGIIFALMKFYHVFSQLEDSMKELKEAVERLNNHEIRISRLEEQN KTLFRGIGGNKND >gi|307679257|gb|GL456470.1| GENE 124 112322 - 112555 338 77 aa, chain + ## HITS:1 COG:lin1702 KEGG:ns NR:ns ## COG: lin1702 COG5546 # Protein_GI_number: 16800770 # Func_class: S Function unknown # Function: Small integral membrane protein # Organism: Listeria innocua # 2 72 3 73 86 65 50.0 3e-11 MINWKSRIKNKQFWLSIIPAVLLLIQVVAVPFGYKFQIEMINKQLLDVVNALFVVLTILG IVTDPTTPGLSDRKGDK >gi|307679257|gb|GL456470.1| GENE 125 112556 - 113797 1331 413 aa, chain + ## HITS:1 COG:SPy1006 KEGG:ns NR:ns ## COG: SPy1006 COG3757 # Protein_GI_number: 15675010 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Streptococcus pyogenes M1 GAS # 97 213 219 342 444 81 38.0 3e-15 MKKKLLATLLVVLFFVSPISTFAAKGDQGVDLSIWNGYQATFGYAHDKFSISQIGGQNNY GIYDQVTYSSQVASTIAQGKRAHTYVWWQNVLTYENAKQVLDYFLPKVQTPKGSIVALDA EDGVQSTDVTLWALDYIKEAGYTPMLYGYKGYLTSSYDLSRIAKKYQLWMAEYPDYEVTP YPNYNYFPSFENIGIFQFTSTYVAGGLDGNVDLTGITDNGYTKNNQPATNTPAIEEGKEV ENTPSSDVKVGDTVKVKFSVDAWATGEAIPQWVKGNSYKVQEVTESRVLLEGILSWISKG NIELLPDAATVPDKQPEATHVVQYGETLSSIAYQYGTNYQRLAALNGLTNPNLIYPGQIL KVNGSVVSNIYTVQYGDNLSSIAAKLGTTYQTLAALNGLANPNLIYSGQTLSY >gi|307679257|gb|GL456470.1| GENE 126 114634 - 114834 336 66 aa, chain + ## HITS:1 COG:L117090 KEGG:ns NR:ns ## COG: L117090 COG1278 # Protein_GI_number: 15672511 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Lactococcus lactis # 1 66 1 66 66 95 80.0 2e-20 MNNGTVKWFNSDKGFGFITGEDGNDVFAHFSAIQADGFKSLEEGQAVTFDIEEGQRGMQA VNIFKA >gi|307679257|gb|GL456470.1| GENE 127 114933 - 115178 218 81 aa, chain + ## HITS:1 COG:no KEGG:EF1990 NR:ns ## KEGG: EF1990 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 73 1 73 73 119 98.0 3e-26 MGFGKWKEVIPSDKSKQFEEGQKVSFIYRKEIRSGIIAVLLINSAVINIIDSSKPKNKKE KTVISYEKLLSMYQLKDLSLD >gi|307679257|gb|GL456470.1| GENE 128 115894 - 116835 500 313 aa, chain + ## HITS:1 COG:STM0489 KEGG:ns NR:ns ## COG: STM0489 COG0276 # Protein_GI_number: 16763869 # Func_class: H Coenzyme transport and metabolism # Function: Protoheme ferro-lyase (ferrochelatase) # Organism: Salmonella typhimurium LT2 # 3 302 5 307 320 272 43.0 6e-73 MKRTGILLVNLGTPKDSSKTEVRKYLKTFLSDRRVIKIHPIIWKPILNGIILNIRPKKSA KLYQKICTENGFPLLEYTEKQMENLKNICPEVEVTIGMSYSEPSIETALDTLLSKEIEEL NVIPMYPQYSGTTVGSVFDSVMNYFIKSDRIVDIKFIRSFYNNPQYIGYFSKKINEALNE SPIDAIVFSYHGIPMSYVKDGDNYPEECTKTTKLIMDKLGDIPYYQTYQSKFGPSEWLKP ATDDTLKKLPSKGIKNILIVAPGFVVDCLETIEELEHENRNYFLENGGEFYKYVHPFNGD IEFAKLVKDIISL >gi|307679257|gb|GL456470.1| GENE 129 117133 - 117258 149 41 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKIIKHFMKPVEIFETLDDDIGMFLIISICTALIFTFFSK >gi|307679257|gb|GL456470.1| GENE 130 117637 - 117963 171 108 aa, chain + ## HITS:1 COG:no KEGG:EF1987 NR:ns ## KEGG: EF1987 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 108 48 155 155 185 98.0 4e-46 MANIRRKLTIYSGFILLESLVSFSIVCVIAGIFSLTITQLIQQNYQREQELTRTRLGYEA ILFLEQTGDLRFKERIYQGETYRFSLMENEGRRILKVTDSRGAILIGQ >gi|307679257|gb|GL456470.1| GENE 131 117953 - 118387 370 144 aa, chain + ## HITS:1 COG:lin1379 KEGG:ns NR:ns ## COG: lin1379 COG4940 # Protein_GI_number: 16800447 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Competence protein ComGF # Organism: Listeria innocua # 4 140 14 148 154 61 28.0 7e-10 MVNKKYAGFTMLECLVALVVLSCMCQLFQLMIQQSFIGNQYLKNNDSKSWHIFLIQLEKE CQKLVFQTGSAQEISFLDSETNKTISIQIKEDKIIKRVNGKGYQPLLIGIKNGQFKNEGQ SFTLEVTFTSGKTFDSFFPIKGEF >gi|307679257|gb|GL456470.1| GENE 132 118387 - 118740 319 117 aa, chain + ## HITS:1 COG:no KEGG:EF1985 NR:ns ## KEGG: EF1985 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 117 1 117 117 165 98.0 5e-40 MRQKYSGNLLFTAMAFVYLMSFLALQLLEERQLTQKFTQATQEYYAGKSILHLFLADVKQ NRRKLKTEERLVYAQVTLDYTYKNEQLRITVLLNKSGRKYQYQERVSHQKKAETILE >gi|307679257|gb|GL456470.1| GENE 133 118905 - 119876 1014 323 aa, chain + ## HITS:1 COG:lin1617 KEGG:ns NR:ns ## COG: lin1617 COG0827 # Protein_GI_number: 16800685 # Func_class: L Replication, recombination and repair # Function: Adenine-specific DNA methylase # Organism: Listeria innocua # 7 317 19 327 332 240 43.0 3e-63 MEQAIQLLQQSLDTSFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYHTIKKIDL APEDVRRLSQLLLLKGTRKEQLQANHQLTPDGIGFLFVYLVEQLTNKSEPLKILDPASGM GNLLLTVLLNLETAGYKVSGYGVDIDETLLAVSSVNNAWSQANIQLFHQDGLQDLLLDPV DLALSDLPIGYYPNDERAKGFAAAAEEGHSYAHHLLMEQAMKYVKPAGFGLFLIPTNILE TEQSEFFKNWLTKNVYLQGMIQLPDELFKSEQSRKSILLVQNKGADAEQVKEVLLAKLAS LKDINKVTEFFKQFEAWKASNLK >gi|307679257|gb|GL456470.1| GENE 134 119901 - 121088 1558 395 aa, chain + ## HITS:1 COG:SPy0109 KEGG:ns NR:ns ## COG: SPy0109 COG0282 # Protein_GI_number: 15674332 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Streptococcus pyogenes M1 GAS # 1 395 1 395 398 507 65.0 1e-143 MSKTIAINAGSSSLKWQLYQMPNEEVIAKGIVERIGLKDSIFTIKYGEGQKYEVIVDIDN HEVAVKMLLDQLIDLNILGSYDEITGVGHRVVAGGEEFKDSVVITDEVLEKIEALSELAP LHNPANAMGIKAFKHILPEIISVAVFDTSFHTTMPEHNYLYSVPREYYEKFAARKYGAHG TSHRYVSQRAAEMLGRPIEDLKIITCHLGNGASITAVDGGKSVDTSMGFTPLAGVTMGTR SGDVDASLLPYLMTKLGLTDVQDMVDILNKKSGLLGLTNGLSSDMRDIQSNLDKPEVQTA YNIFIDRIRKYIGSYVTVMNGVDAIVFTAGIGENAVGVRKDIIDGMTWFGCEIDDDKNNV HGEEAVISTDDSKIKLLLVPTDEELMIARDVERLK >gi|307679257|gb|GL456470.1| GENE 135 121200 - 121673 623 157 aa, chain - ## HITS:1 COG:lin1615 KEGG:ns NR:ns ## COG: lin1615 COG0589 # Protein_GI_number: 16800683 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Listeria innocua # 1 147 1 147 152 161 57.0 4e-40 MLQQYQKIMIAIDGSDEADLAFKKAVNVAKRNDAELLLAHVVDTRSFQSVSSFDGALAEE AMSMAKETLDTYQQQAVDMGQTKVSSVLAYGSPKNIIAKELPKEYNIDLIMLGATGLNAV ERLFIGSVSESVIRNASCDVLVVRTDLDNKLPKNEEK >gi|307679257|gb|GL456470.1| GENE 136 121851 - 122129 298 92 aa, chain - ## HITS:1 COG:no KEGG:EF1980 NR:ns ## KEGG: EF1980 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 92 19 110 110 114 100.0 2e-24 MIRILVLLLAVVTGVASYYLMKKSAAFLPLLKKETATESQQFIERFGRYYLIIAILGVLA AIFNRPLLSIGFIFFVLLLSTLFSLTFAKKMS >gi|307679257|gb|GL456470.1| GENE 137 122170 - 122373 105 67 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYALSFHCVDRTFLLISRDPACIKVGNMPFLLVVQYCDRGTHLLILRVQYSRTITGIDGF YHFYVDF >gi|307679257|gb|GL456470.1| GENE 138 122457 - 123734 1680 425 aa, chain - ## HITS:1 COG:lin1549 KEGG:ns NR:ns ## COG: lin1549 COG2256 # Protein_GI_number: 16800617 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Listeria innocua # 3 425 4 426 427 595 69.0 1e-170 MQQPLAYRMRPRHLDEVVGQQHLVGPGKIIRRMVEAKMLSSMILYGPPGTGKTSIASAIA GSTNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI IMIGATTENPYITINPAIRSRTQIFEVKPLTETDIQQAIQEALTDSTRGLGDYPVHLEEK ALQHLTRATNGDLRSALNGLELAVKSTPKNEQGEIKITLPIIEECVQRKALTHDKDGDAH YDVISAFQKSIRGSDVDAALHYLGRLVEAGDLPIICRRLMVIAYEDIGLGNPAAAARTVT AVQAAEKLGFPEARIPLASVVIDLCLSPKSNSAVTAIDAALADIRQGSVGDVPDHLRDAH YAGAKELNRGIGYQYPHNFENGWVNQQYLPDKLKEARYYEPIDIGKYEQALHQQLKRIQE WKQKK >gi|307679257|gb|GL456470.1| GENE 139 123863 - 124540 777 225 aa, chain + ## HITS:1 COG:SA2134 KEGG:ns NR:ns ## COG: SA2134 COG2094 # Protein_GI_number: 15927924 # Func_class: L Replication, recombination and repair # Function: 3-methyladenine DNA glycosylase # Organism: Staphylococcus aureus N315 # 8 198 3 192 202 186 46.0 2e-47 MKETINIFNTKTTEEVAQYLLGMYLEHETATGVLGGYIVDAEAYLGPDDEAAHSFGLRKT PRLQAMYDKPGTIYLYTMHTHLILNMVTQEQGKPQGVMIRAIEPVEGVDKMIENRQGRQG VELTNGPGKLVAALGIDKQLYGQSIFSSSLRLVPEKRKFPKKIEALPRIGIPNKGRWTEL PLRYVVAGNPYISKQKRTAVDQIDFGWKDEENEKSNNAHILRGTT >gi|307679257|gb|GL456470.1| GENE 140 124497 - 124982 687 161 aa, chain + ## HITS:1 COG:no KEGG:EF1977 NR:ns ## KEGG: EF1977 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 161 1 161 161 282 100.0 3e-75 MKKATMLTYLEEQLEKHLGDYEVGLDWDRKNHTIEVIVRLYAENNEQVAIDDVDGTLSEE EFIEFEDGLLFYNPQKSVVDDEEYLVTIPYEGKKGLRKAVLDGFIHYLKVVLDEGQSDLL DFLSDETAEVFELHWEPADFEAMIKKVAETEKEQWIAYPSY >gi|307679257|gb|GL456470.1| GENE 141 124998 - 125945 1600 315 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227519318|ref|ZP_03949367.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis TX0104] # 1 315 1 315 315 620 100 1e-176 MKWTEVKVETASEAVEAISNIMMEAGASGVAIEDALDIENFESDLYGEILDKEQFTHIKE GAIVMAYFPETTFLPEILPFMKENILRLPEYGLSIGKNEMTISEVAESDWATAWKKYYHP VRVTRFLTIVPSWEAYHAQDEAEKIITLDPGMAFGTGTHPTTRLTLQALETVLRGGETVL DVGTGSGVLSIASRYLGAKDVYAYDLDEVAVAAAKENMDLNPIAADVHVSANDLLKGIDH SADVIVANILADIIVLMIEDAWRLLKQDGTFIISGIIEDKKAMVLEALTKVGFVVDQLFN QGDWYAIILKKPEEE >gi|307679257|gb|GL456470.1| GENE 142 125947 - 126699 707 250 aa, chain + ## HITS:1 COG:lin1507 KEGG:ns NR:ns ## COG: lin1507 COG1385 # Protein_GI_number: 16800575 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 248 1 249 255 235 49.0 7e-62 MQRYFMKEDYQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSV YFKEISKEEMDKELPIEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHK KRAAKEKRLQKIATEAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEK SQLAQVLSTCQPGARLCVLFGPEGGFAPQEIEQFLQAGAKLCGLGPRILRAETAPLYLLS AVSYQMELLN >gi|307679257|gb|GL456470.1| GENE 143 126914 - 129127 2600 737 aa, chain + ## HITS:1 COG:lin1558 KEGG:ns NR:ns ## COG: lin1558 COG0317 # Protein_GI_number: 16800626 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Listeria innocua # 1 734 1 735 738 981 66.0 0 MPKEEILTGPAVIKIVSTYMGPEHVELVQKALTYAEKAHEGQVRQSGEPYIIHPIQVAGI LAELHMDPHTVATGFLHDVVEDTDVTLDDLKEEFGEDIAMLVDGVTKLGKIKYKSHEEQL AENHRKMLLAMAQDLRVIMVKLADRLHNMRTLKHLREDKQRRIAQETLEIYAPLAHRLGI SRIKWELEDTALRYINPNQYYRIVNLMQSKRDEREAYVAEAVEDIRLATEDLEIYAEIYG RPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVDSIKDCYAVLGAIHTRWTPMPGRFKDYI AMPKANMYQSIHTTVIGPKGNPVEVQIRTHEMHQIAEFGVAAHWAYKEGKAEKIETDELT KQVDWFHEIIELQDESYDASEFMQGVKEDIFSDKVYVFTPSGDVTELPKGSGPLDFAYSI HTEIGNKTTGAKVNGKMVQLDYVLKNGDIIEVLTSPNSFGPSRDWLKMVKTSKAKNKIKR FFKEQDREDNIIKGHDAVIKYMTEIGFTPKEFLTKNKMAEVLDKFKFQTEDDLFAAVGYG EVSAQVVCNRLTEKERREQELERQRQEAEELLNQPAKKESEKMKVRHEGGIVIQGVDNLL IRLSRCCNPVPGDEIVGYITKGRGVSIHRADCPNVQHQEELAQRLIEVEWEDTEHSRKEY AADLEIYGYDRSGLLSDVLQVISSMTKNLVGVEARPSKDKMAQIHVTVKIQNLSHLKTIV DKIKSVPDVYSVRRTNG >gi|307679257|gb|GL456470.1| GENE 144 129151 - 129597 532 148 aa, chain + ## HITS:1 COG:SPy1980 KEGG:ns NR:ns ## COG: SPy1980 COG1490 # Protein_GI_number: 15675771 # Func_class: J Translation, ribosomal structure and biogenesis # Function: D-Tyr-tRNAtyr deacylase # Organism: Streptococcus pyogenes M1 GAS # 1 146 1 145 147 174 60.0 6e-44 MKVVIQRVSQAQVAIEEQIVGQIKQGFMVLVGIHQEDTPEDVAYVVGKISKLRVFEDDEG KMNRSIQEIEGSILSISQFTLYAKTKKGNRPSFIEAARPDVSIPLYELFNQQLEAEGIAV ATGEFGADMQVSLTNDGPVTIVIDTREK >gi|307679257|gb|GL456470.1| GENE 145 129955 - 131256 1612 433 aa, chain + ## HITS:1 COG:SP2121 KEGG:ns NR:ns ## COG: SP2121 COG0124 # Protein_GI_number: 15901936 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Histidyl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 426 1 424 429 554 64.0 1e-157 MSYQKPKGTNDILPGTSEKWQFVEETARLIFKDYQYQEIRTPIFEHYEVISRSVGDTTDI VSKEMYDFYDKGDRHVTLRPEGTAPIVRAFVENKLYGPEYTKPYKTYYMGPMFRYERPQA GRLRQFHQIGVEAFGSENPALDVEIMAMALDFFKQLGIQQIKLVINSLGDKETRATYRQA LIDYLEPHMAELSEDSQRRLHENPLRVLDSKDKKDKVIVAEAPSILDYLNEPSKAHFEAV TDMLDLLEIPYEIDSNMVRGLDYYTHTIFEIMSEAPKMGAQSTICAGGRYNGLVEELGGP DTPGFGFGMGIERVLLTMEAEEVVIPALSELDAYVVGIGSETNITALQLVQSIRNFGFSA DRDYMNRKPKAQFKTADKLQAKLVLTIGENELNEGIVNVKSMATREEKAFPLSAIHDSFD EVYDEMMTKMIEE >gi|307679257|gb|GL456470.1| GENE 146 131274 - 133043 2312 589 aa, chain + ## HITS:1 COG:lin1554 KEGG:ns NR:ns ## COG: lin1554 COG0173 # Protein_GI_number: 16800622 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl-tRNA synthetase # Organism: Listeria innocua # 1 583 1 584 591 801 67.0 0 MAKRTTYCGNVSAEFIEKEVVLKGWVQKRRDLGGVIFIDLRDREGIVQVVFNPEKSKEAW EIADKCRSENVIEVKGQVVYRDKEAINPKMKTGEFEVMATDITILNTAKTTPFTIEDDNN VNDELRMKYRYLDLRRPSMTNNIKLRHQVTKTIRHYLDNHDFLDIETPYLGKSTPEGARD YLVPSRVHAGHFYALPQSPQLFKQLLMGAGFDRYYQIVRCFRDEDLRGDRQPEFTQIDIE TTFLTPEEIQTYTENMLAEVMKETKGIEISVPFPRMSYDEAMARYGSDKPDTRFAMELID VADVVKDVDFKVFQAALENGGHVKALNAKGAADKYSRKDMDNLGKYVSQFGAKGLAWLKV EEDGLKGPIAKFLTEVSDELIAATNAEVGDILMFGADKPEIVAAALGAVRTRLGKELGLI DESKFNFLWIVDWPLFEYDEEAGRYVSAHHPFTQPKAEDVARLATDPASVYAEAYDVVLN GYELGGGSLRIHTRELQEKMFETLGFTKEEAQDQFGFLLDALDYGFPPHGGIALGLDRLA MLLAGEENIREVIAFPKNGKAIDPMNNAPSLVSPLQLFELNIDVTAIDE >gi|307679257|gb|GL456470.1| GENE 147 133218 - 134033 746 271 aa, chain + ## HITS:1 COG:L0202 KEGG:ns NR:ns ## COG: L0202 COG0351 # Protein_GI_number: 15672469 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Lactococcus lactis # 2 241 8 249 262 182 40.0 5e-46 MTKIILTIGGSDPFSGGGIQTDLKTFENHQVFGLLTLTCLATAPKNHFQIHDMETSLVKE QLASIPAGSLDGIKIGLIHSEESMLQIATFLKKHAGLPVVLDPVLAFKETTSVYEKRYMQ LLIEKLFPFATIITPNLKEAELLIGRKLTTVEEVQQAAEELNSLGAATVVIKGGNRWLGQ EARDFFYDGQQHIQLVKEKVMAHTIDGAGCSFASAIGANLVKGYPLIEAVDLAKTYVHEA IVSGVQLNAAFGSVWHEGLLAGGVADNDKKN >gi|307679257|gb|GL456470.1| GENE 148 134017 - 134523 651 168 aa, chain + ## HITS:1 COG:SP1597 KEGG:ns NR:ns ## COG: SP1597 COG4720 # Protein_GI_number: 15901437 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 2 154 6 152 153 105 43.0 5e-23 MTRKISLYAVITALTVAVSMVFIIPVPATNGFVTLADAGIYIASLLFGPIGGLTVGALSG GLIDLLSGYPQWFVFSLLIHGGQGWLAGHFFNKNKKMQTLGLLLASLLMISGYALATSWL YGVGAGIASLPGNIIQSLFGVIVALPLSQTLKRVLPKNGRLEERRMNK >gi|307679257|gb|GL456470.1| GENE 149 134520 - 135089 764 189 aa, chain + ## HITS:1 COG:L86338 KEGG:ns NR:ns ## COG: L86338 COG4475 # Protein_GI_number: 15672471 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 3 182 1 180 180 205 61.0 5e-53 MTIDEKMLKEQLVTITEEVITAGNLKKGDLFVLGCTTSEVVGGVIGKNSSAEVGQWIVST LIEQLDKKGISLAVQGCEHINRALAMERRVAEEKGFEIVSVVPQLHAGGSCSVAAFEKFD EPVEVEHIVAQAGIDIGDTSIGMHVKHVQVPLRLSIRTLGAAHVTALYSRPKYIGGPRAH YETTQERNR >gi|307679257|gb|GL456470.1| GENE 150 135232 - 136110 854 292 aa, chain + ## HITS:1 COG:SP2113 KEGG:ns NR:ns ## COG: SP2113 COG1284 # Protein_GI_number: 15901928 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 3 290 25 312 313 320 52.0 1e-87 MKKIYDGLPVHDYTTKFSVSIVYAILASIAMNFFYQPGNIYSSGLTGLAQILTTLSTKIV GFNVPVSITLYLLNVPLFFIAWKKIGKKFTIFTFITVTLTSLFMHIVPQTVMTQDPIICA IFGGAISGSGIGFVLKNGVSSGGLDILSITIRKKTGRSVGSISIYFNALIVFVAGYLFGW QYMFYSALSIFVSGKVTDAVYTKQKKMQVMIVTKNPDRVVDEIQKKMRRGITIIHEAEGA YHHDRQTVLLTIVTRFELPSLEAAMKESDPNAFVSISDNVKILGRFYEEDYK >gi|307679257|gb|GL456470.1| GENE 151 136530 - 137567 1029 345 aa, chain + ## HITS:1 COG:lin2554 KEGG:ns NR:ns ## COG: lin2554 COG2390 # Protein_GI_number: 16801616 # Func_class: K Transcription # Function: Transcriptional regulator, contains sigma factor-related N-terminal domain # Organism: Listeria innocua # 13 342 13 342 348 325 50.0 8e-89 MLKEFKMIEAVAPDMLDVLQERFQILRNIYWMQPIGRRSLSETMGITERVLRTETDVLKQ LNLIEPSKSGMTLTERGLEVYQGLELVMNQLLGMHQIEKEMTQYFGIQRCIVVAGDSDIQ KKVLSDFGDVLTNTLNLLLPNGENTIAVMGGTTMAMVAENMGSLETEKRHNLFVPARGGI GEAVSVQANSISAVMANKTGGNYRALYVPEQLSRETYNSLLQEPSIQEVLTLISHANCVV HSIGRALHMAARRKMSDDEMVMLKQKNAVAESFGYFFDEEGKVVYKIPRIGLQLKNLQEI PYVVAIAGGKTKAKAIRAYMKNAPKQTWLITDEAAANEILKGVTL >gi|307679257|gb|GL456470.1| GENE 152 137607 - 138608 1315 333 aa, chain + ## HITS:1 COG:lin2553 KEGG:ns NR:ns ## COG: lin2553 COG0057 # Protein_GI_number: 16801615 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Listeria innocua # 1 333 1 334 336 549 83.0 1e-156 MTVKVGINGFGRIGRLAFRRIQDVEGIEVVAINDLTDAKMLAHLLKYDTTQGRFNGTVEV HEGSFNVNGKEIKVLANRNPEELPWGELGVDIVLECTGFFTSKEAAEKHLTAGAKRVVIS APGGNDVPTIVYNTNHETLTGEETVISGASCTTNCLAPMAKALHDNFGVVEGLMTTIHAY TGDQMTLDGPHPKGDFRRARAAAANIVPNSTGAAKAIGLVIPELNGKLDGAAQRVPVATG SLTELVTVLDKEVTVDEVNAVMEKAANESYGYNTDEIVSSDIVGMTYGSLFDATQTKVMT VGDKQLVKTVAWYDNEMSYTAQLVRTLEYFANL >gi|307679257|gb|GL456470.1| GENE 153 138735 - 139928 1460 397 aa, chain + ## HITS:1 COG:lin2552 KEGG:ns NR:ns ## COG: lin2552 COG0126 # Protein_GI_number: 16801614 # Func_class: G Carbohydrate transport and metabolism # Function: 3-phosphoglycerate kinase # Organism: Listeria innocua # 1 397 1 396 396 592 79.0 1e-169 MAKKTIKDVDLKDKKVLVRVDFNVPLKDGVITNDNRIVAALPTIKYVIENGGKAILFSHL GRVKTEEDKAGKSLKPVAERLSELLGQPVTFVPETRGKELEDAVNNMKDGDVLVFENTRF EDVDGKKESGNDAELGKYWASLGDVFVNDAFGTAHRAHASNVGIASTGIPTVAGFLMEKE IKFIGEAVENPKRPFVAILGGAKVSDKIAVIENLIEKADKILIGGGMAYTFMKAQGYSVG LSLLEEDKVDLAKSLMEKAGDKLVLPVDTVVSKEFSNDAPFHTVPSTEIPDDEEGLDIGE KTIELFANELQGAKTVVWNGPMGVFEMSNFAKGTIGVCEAIANLEDATTIIGGGDSAAAA IQLGYENKFSHISTGGGASLELLEGKTLPGLASINDK >gi|307679257|gb|GL456470.1| GENE 154 139977 - 140732 898 251 aa, chain + ## HITS:1 COG:L0006 KEGG:ns NR:ns ## COG: L0006 COG0149 # Protein_GI_number: 15673116 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Lactococcus lactis # 2 251 3 252 252 385 80.0 1e-107 MRKPIIAGNWKMNKTLSEAQSFAEAVKNAVPSNDVVDAVIGSPALFLAPLAWNLKDSEVK LAAQNCYWENAGAFTGENSPAAIADLGVNYVIIGHSERREYFHETDEDINKKAKAIFANG MTPIFCCGETLETYEAGKTAEWIEGQITNGLVGLSNEQVASMVIAYEPIWAIGTGKSADA NIADEICGVVRSTVEKLYGKEVSEAVRIQYGGSVKPENIAEYMAKENVDGALVGGASLEA DSFLALLDAVK >gi|307679257|gb|GL456470.1| GENE 155 140864 - 142162 1571 432 aa, chain + ## HITS:1 COG:SP1128 KEGG:ns NR:ns ## COG: SP1128 COG0148 # Protein_GI_number: 15900994 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Streptococcus pneumoniae TIGR4 # 1 430 1 433 434 667 82.0 0 MSIITDIYAREVLDSRGNPTIEVEVYTESGAFGRGMVPSGASTGEYEAVELRDGDKARYL GKGVTKAVDNVNNIIAEAIIGYDVRDQMAIDKAMIDLDGTPNKGKLGANAILGVSIAVAR AAADYLEVPLYHYLGGFNTKVLPTPMMNIINGGSHADNSIDFQEFMIMPVGAPTFKEALR MGAEVFHALASILKGRGLATSVGDEGGFAPNLGSNEEGFEVIIEAIEKAGYVPGKDVVLA MDAASSEFYDKEKGVYVLADSGEGEKTTEEMIAFYEELVSKYPIISIEDGLDENDWDGFK KLTEVLGDKVQLVGDDLFVTNTTKLAEGIEKGIANSILIKVNQIGTLTETFEAIEMAKEA GYTAVVSHRSGETEDSTISDIAVATNAGQIKTGSLSRTDRIAKYNQLLRIEDQLGDVAEY KGLKSFYNLKNK >gi|307679257|gb|GL456470.1| GENE 156 142516 - 143340 566 274 aa, chain + ## HITS:1 COG:no KEGG:EF1959 NR:ns ## KEGG: EF1959 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 274 1 274 274 546 100.0 1e-154 MSNGKKIFISHSSKDQEYVDAFIQLLKKFGFRTQDIFYSSTIETGVQPGELIFDTIKREL TNQPVMLYFLSDHYYQSIPCLNEMGASWMLSDKHYPIALNNFSMKDMKGVISSERLAIAF NDKTSTNEINCLLKKLSHDTDVQAEPDFELNVEKNIQPFQNKLTQLIRQASYLKPDEKGY FETILSTHRPVYGTAKGVYDCFKLPSLIEPKSLGLDTLSEDESHWLFFFLTWGTFQEGEK VRFKLKKDKAYNNREFSDIGKCKNIYVSYLEKVE >gi|307679257|gb|GL456470.1| GENE 157 143357 - 144718 1152 453 aa, chain + ## HITS:1 COG:lin2806 KEGG:ns NR:ns ## COG: lin2806 COG0232 # Protein_GI_number: 16801867 # Func_class: F Nucleotide transport and metabolism # Function: dGTP triphosphohydrolase # Organism: Listeria innocua # 3 451 1 461 465 279 36.0 1e-74 MKMNWRQLVGTYRISDNGKQYQNDWLNKQVDLATELRKSFDSDYRRVIKSDAFRRLQDKT QVFPLERNDFVRTRLTHSLEVAMHSRDILRLVISQLNERNIEVMELSECYRLLETAALIH DIGNPPFGHFGEEAIRIWFEKNGPLYACWSDFSEQQQNDFLNFEGNAQTIRLLTKLHHDN GTSKAGMKLTATTLATVIKYTASSDQLNKQQLLSKKVGYFYSEKQVFNAIKFATGTQNKR HPLVFLLEASDDIAYTFSDIEDAYNYGLYSYQDLKQFVDGQTGTKKFLMLEKDKTEEATL QEFLRKTQRAVCQSVAKNFANHYDLIMRGIYHNEIIIEDCDEVKCFQALKNFSRVYVFQT KTILDQEVLGFNIINRLLDEFVPVVLKYEKVSMNKYEERIFNNISESAKALYRREAKNAT EAEKDYYRLKMAVDFVCNMTDGYAKKVYDTLFT >gi|307679257|gb|GL456470.1| GENE 158 145289 - 145624 288 111 aa, chain + ## HITS:1 COG:STM4534_1 KEGG:ns NR:ns ## COG: STM4534_1 COG1221 # Protein_GI_number: 16767778 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Salmonella typhimurium LT2 # 1 107 1 109 460 105 50.0 2e-23 MLKTQIVDYLRNQTAFFEPSLVSEIFTASNIATTFSIKRNTASHYLNQLNEEGILVKINT RPVYFFHKEAFQQQNYLLKRTVYQSFQEMIDEQPVFDRKSDFFSVGHWLSR >gi|307679257|gb|GL456470.1| GENE 159 145560 - 148061 1935 833 aa, chain + ## HITS:1 COG:STM4534_2 KEGG:ns NR:ns ## COG: STM4534_2 COG3933 # Protein_GI_number: 16767778 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Salmonella typhimurium LT2 # 367 833 1 461 461 345 40.0 2e-94 MNSLFLIAKVIFFQSVIGYRGSLAQTIEQLKMAALYPGGGLPVLITGESGTGKSFLASLY YQFCLSKELLDDSAPFVTVNCAQYANNPELLTSQLFGHLKGAFTGADSDKIGAFQSAEGG VLFLDEVHRLSPEGQEKLFTFLDQGIIYRMGETNRPIPVTCRLCFATTEEISSTFLTTFL RRIPIQIKIPSLAERTQAERKQLIMRAFYEEQQAIQKAVTITPQVIQLLENHHYVGNVGE LRNNIKIITARSFAANLDKRVIPITLHDLPKEFLDQSIKLAPDENGLPIRLDEQTNLVSL LEETELAQRRIIQSYERILRLYVSHHHHLSTANNDISKEIERLFDDLLFEKKREKNHEML LFITQNIRQLLETIESSYQIRFNGSLVYALSTYLFQRRCIDWFPEKEPTTVIDELLTEVQ TKLATSYGYAEQLLTLVKRSLDIELSQMDRIIVTIYLHYSGSVKESHYPKAVIVAHGYAT ASSIANVANRLLNVPIFQSFDMPLDVTPKKISEHLIHYMERQETRNGLVILFDMGSLKEI YQYFPAEEEGPFLLMNNVTTSLALSIGEAIKDEVSFEELPQKALTVHPNEWEIILPENKT ERVILTTCSTGIGTAVKIRDLLEKSLPAEAQLKIIPCEYNQLRNAESIKESFPEYEIVGI IGTNNPSSNDLPYISLEELIAGKGITTLLEWTKRELTKDMLSYVNHELIRNFSLDRVIQS VTILDTEKIIRQVEVFLIQLEERWQQTIQNDRKLAVYVHVSCLIERLIRNEPIENYNGAE QLKQCQRTVLQELKEAFSVIEKVYSVNIPESELFYVYDVLFGKTEFNNAESDF >gi|307679257|gb|GL456470.1| GENE 160 148133 - 148552 494 139 aa, chain + ## HITS:1 COG:STM4535 KEGG:ns NR:ns ## COG: STM4535 COG2893 # Protein_GI_number: 16767779 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Salmonella typhimurium LT2 # 1 128 1 128 140 95 36.0 3e-20 MERKIILATHGNFAAGIQTSLALICGETKNVECLCAYMEQPYDLAKTVKDILKNNQQNEL IVITDLFGGSVNNEFFNYVGKQAMHLISGLNLATLIEIYTQINTVDSLVDLVKRAVENGQ ESLCYCNELSSKEILEEEF >gi|307679257|gb|GL456470.1| GENE 161 148564 - 149034 574 156 aa, chain + ## HITS:1 COG:STM4536 KEGG:ns NR:ns ## COG: STM4536 COG3444 # Protein_GI_number: 16767780 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Salmonella typhimurium LT2 # 1 149 1 149 153 206 71.0 1e-53 MIKLLRVDHRLLHGQVAFSWTQGLGADCILIANDDVPKNDIRKTTIKLAKPAGVKLVIKT IEDAIAALKSGVTEKYKLFIVVESVEDAYRLATAYPEIKEINLGGMKVRENTRNISKAIN ITPDEEKMVKELVANGCEVEIRQVPNDKKVAALNVL >gi|307679257|gb|GL456470.1| GENE 162 149050 - 149841 999 263 aa, chain + ## HITS:1 COG:STM4537 KEGG:ns NR:ns ## COG: STM4537 COG3715 # Protein_GI_number: 16767781 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Salmonella typhimurium LT2 # 4 263 3 259 259 311 71.0 7e-85 MIGQAILLGCIAFIAQSEYALGTSLLSRPIVTGLFVGIVLGDVKTGVIMGATLELAFIGS FSVGASIPPDVVTGGILGTAFAITAGAGTETALVLGLPIATLTLILKNIYLGLLIPIMSQ KADQYAEEGAYKGVERMHLLAGFGLSFMLALIVTISFAVGSNTIKGLLDLIPEFIQHGLS VATGIIPALGFAMLARLLINKQVAPYFFLGFVLMAYFKLPVTGVAILGAITAVIVVNIMN YAKGKNETIQTTSGEVIDDDEDF >gi|307679257|gb|GL456470.1| GENE 163 149825 - 150655 816 276 aa, chain + ## HITS:1 COG:STM4538 KEGG:ns NR:ns ## COG: STM4538 COG3716 # Protein_GI_number: 16767782 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Salmonella typhimurium LT2 # 6 276 9 278 278 377 69.0 1e-104 MTKTSKTKTENLITKKELNQVFWRSFQMEFSWNYERQMNMAYVYAMIPILKKLYPQKEEM AAALKRHLAFFNTTPHIVTFILGINAAMEEENVLDENFEVGTIDSIKTSLMGPLAGLGDS FFWGTLRLIATGVGTSLALQGNVLGPILFLLIFNVPHVIVRYLLNRWGYKLGTGFLKKIQ ANGMMESLTLGASIIGLMVVGAMTASMIDLTIPITISGSGKNAVTVQSIFDDIMPKLLPL ASFGFVFYLLKKEVKPLAILGGMAIVGILGSLIGLF >gi|307679257|gb|GL456470.1| GENE 164 150666 - 151742 991 358 aa, chain + ## HITS:1 COG:lin0034 KEGG:ns NR:ns ## COG: lin0034 COG0449 # Protein_GI_number: 16799113 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Listeria innocua # 3 348 4 354 361 299 45.0 7e-81 MKTMLDYINEEQAALTQILNQFQLTDTDVSKVTHCLILATGSSHNACQAAKVYLEEVAPI YVEIQEPFNFAHYGKVDDRFDLVVAVSQSGKSASTIDAIAKIKNQTSVKTVALTSDVTSP ITEVVDEVLDLKMGLETVGFVTKGYTATLLNLFLFGLKLGYQKHQLTKVEVGEELAKLAK AIQEIDSVIYKTEQFWQKTKKELIEGTRFIAIGYGPNIGTAKEFETKFTETVRLPSQGFE VEAYMHGPYLEADTTHLLFFIENQSPIQARSQALKNYLANYVGQCYTITTRSTRASNTLE LASDVEEKISPLLLVIPFQYLAYQVATSKGIDLSQRIFDDFDCVLKSKIAKKEGNQPC >gi|307679257|gb|GL456470.1| GENE 165 151736 - 152740 1288 334 aa, chain + ## HITS:1 COG:lin2106 KEGG:ns NR:ns ## COG: lin2106 COG2222 # Protein_GI_number: 16801172 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted phosphosugar isomerases # Organism: Listeria innocua # 1 334 1 331 331 407 56.0 1e-113 MLKFNEEQQIKDIRGALALRSDVEKVVDQVWTKGFDAVYYLGIGGTYASAMQAVTYANGK SNLPIYVQHAAEYYTTGNKRLTEKSFVILSSVTGTTQEVVQAVQEIKKVGATLFGFIDAK DSLLADLCDYVVTYPAPGTEQIKFFMVADRLMQKNNEFTDYENYYQELEEYLPTGLAEAE KSADAFGLAFAEKHRHDSIHYFIGAGNQWGAVYSYAMCYWEEQSWLRSKSIHAAEFLHGT LEIVDETTPVTLFIGEDEQRPLAERVAKLLPKICANYTIIDSKAYELPGISEKYRGRVIS FLLMHAVTQRIDAHVEKLNCHPLEIRRYYRQFDY >gi|307679257|gb|GL456470.1| GENE 166 152814 - 153164 467 116 aa, chain + ## HITS:1 COG:lin0147 KEGG:ns NR:ns ## COG: lin0147 COG4898 # Protein_GI_number: 16799224 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 115 1 115 116 160 73.0 4e-40 MTKPKIYTMTFASVYPLYIQKAERKNRTQAEVDEIIYWLTGYDEKGLQQQLAQKVTMETF FEEAPNFNENAQLIKGVICGYRVEEIEDPLMQKIRYLDKLIDELAKGKAMEKILRT >gi|307679257|gb|GL456470.1| GENE 167 153257 - 153616 305 119 aa, chain - ## HITS:1 COG:lin0899 KEGG:ns NR:ns ## COG: lin0899 COG5646 # Protein_GI_number: 16799972 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 2 110 8 116 130 101 49.0 3e-22 MTIIANYIRQQPQHQTQLTEIYQAILAVVPQETTEKIAYGMPTFYLNGNLVHFAAAKQHL GFYPTPSAIQRFSKELRPFKTSKGAIQFPYTQELPLSLIQEIVKFRVQENMKSVGQKSL >gi|307679257|gb|GL456470.1| GENE 168 153767 - 153916 238 49 aa, chain - ## HITS:1 COG:no KEGG:EF1947 NR:ns ## KEGG: EF1947 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 49 1 49 49 79 100.0 4e-14 MTYKVKNIQYRIQLDTDKNIFIVFDAKNESKTATGHTIEEAIAHLKQLN >gi|307679257|gb|GL456470.1| GENE 169 153919 - 154020 78 33 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLFVAKIIFQWYSNNGISLSVIVAFLEYFMKGE >gi|307679257|gb|GL456470.1| GENE 170 154125 - 155960 1294 611 aa, chain + ## HITS:1 COG:mll7848 KEGG:ns NR:ns ## COG: mll7848 COG1368 # Protein_GI_number: 13476512 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Mesorhizobium loti # 9 609 39 641 653 194 27.0 5e-49 MKKRVEKFRRWPYRYLLYGIGFILLIIFSNLYLQWCQNNLSVDLAFKFAFSWHTEKFFLG CFVLSVFLLFLCSLAGSLGVGALLYSVIIGVLGFADYQKMFYRVEPIYPDDLKMITEVSL LKEMVGLWPFIFVVALGCVALFFLGKAFYKSFFLSKKKQTIRVLSLVLSIGLFSYIGDFN NPQNLLRKAYNKTALWIPYSQKMNYYNTGFIGGFLYNLKVEAMDQPKGYSKEAISEITQK YQKLAEAKTVPSNEQPNIVFVMSESFSNPDHLKGLSIIGNPLADYQQIADKTYSGQMLSQ NYGGGTANIEFEALTSFSMELMNAQMTTPYTMMIPKMTELPSIVSLLKEQKYQTTAIHPY NTSMYKRKDVYKILGFDQFINEKTMNYTDKLENNPYISDQAAYQEVTTLLKEKEQPQFIH LVTMQTHMPYENKYTTSNYFSQGNGNQVALNNYLQDIAYSSEALKNFLQEIEKMPKRTLV VFWGDHLPSIYDENIQALNEGAALHQTEFLMYDTANQLTEKNQHQATISPFYFAPSLFQQ SGLPQSGFYAMLNEVQEQLPAFEKGNYYLGGEWKKTVEMNKKQEQLYEEYRLIQYDIVSG KQYSLENQFFS >gi|307679257|gb|GL456470.1| GENE 171 155997 - 157178 1070 393 aa, chain - ## HITS:1 COG:lin2916 KEGG:ns NR:ns ## COG: lin2916 COG0477 # Protein_GI_number: 16801975 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 2 381 3 386 396 268 43.0 1e-71 MKNTRNTVPSLLIIILLVGFPQISESIFTPILPALSSAFNIHDSVAQLTMSIYFVAFAVG VLFWGILSDTIGRRPAMLLGILCYLIGNIGLFLSPTFPWLLFFRLIQAFGASVGSVITQS MMRESFNDLQRGKIFAQTSAALSLSPAIGPLVGGLVQTYFGYQHVFSTLIVMAVLLLFYS FYRLPETFHLGNTLTKAPFWSVAKRLSFDSKVWCYGLLIGGINGLLFSYYAEAPFIFINH FGFSSVQYGFLGLVLAVSSILAAVLINWLLGYWSAEKIAFAGLLLSIFAACCLLIMTQFE SIIGLILFIFLFFLGINITLPNALSMALKGYESVIGTASGIFSFVYYLFVSFFTYLISYF HNGTIWVLPLYFLSFACLLAFSYYVIVYRKTLK >gi|307679257|gb|GL456470.1| GENE 172 157288 - 157683 492 131 aa, chain - ## HITS:1 COG:no KEGG:EF1941 NR:ns ## KEGG: EF1941 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 131 1 131 131 234 99.0 1e-60 MEQASFTVSSWQEQPIDNLNENFPVNQASATYQLSGALSGTASVEYLMTYQGSSMADGLE AVAQVVGFLHFEGTYLGKKGTFTACEKGTFTQGLLDCPGELFQASGELAGLSGRYTYEFS QEEALLHLDFV >gi|307679257|gb|GL456470.1| GENE 173 157755 - 158420 607 221 aa, chain - ## HITS:1 COG:ECs3055 KEGG:ns NR:ns ## COG: ECs3055 COG0664 # Protein_GI_number: 15832309 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Escherichia coli O157:H7 # 22 219 2 208 219 120 34.0 2e-27 MLKTAYQQSPKQELAKNTPFFNETDLKHSFIIDFENQEFIHHQAEPLNYLFYLIKGKAKI LKTERNGRQSIVQFLTTGDLIGDLTLVQAETIPKDVIALGETCCLAIPLAYAETVLKNKV LFMQQLSHYLGKKMLQRVDHFTTNQTYELSYRLAELLLVAANHEDVYKEKHTEIAEYLGV SYRHLIYTFKQFRERGFIQKQGTAYHINRLALHSFVQKMKS >gi|307679257|gb|GL456470.1| GENE 174 158509 - 159159 633 216 aa, chain + ## HITS:1 COG:no KEGG:EF1939 NR:ns ## KEGG: EF1939 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 216 1 216 216 354 99.0 2e-96 MWKKKIVLSFLFYLISALGISLTIQAGIGVSSFNAFNVTFATLTHLKVGTVTTAINLAFL GTCWLLDQQRKIQDYLIILVALIGFGFVINFFLYQLFGSLVFQNYLVKIVLFILGTIIAG IGTGQVVALGVLQFPIEKFCTLISERTRYSFQFYRYLVDIFCVSLALGLSISYHLPIFVR EGTVISLFLLSWVISWSRKRGQQRILRIQIKKLESE >gi|307679257|gb|GL456470.1| GENE 175 159477 - 162182 3422 901 aa, chain + ## HITS:1 COG:SPy0623 KEGG:ns NR:ns ## COG: SPy0623 COG0474 # Protein_GI_number: 15674699 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pyogenes M1 GAS # 6 899 3 888 893 1126 66.0 0 MSEEKKTQLSEAFYAQDDTVVLEKMNTTTDGLSAQEAQKRLETYGENVLDEGKKKSLAVK FFEQFKDFMIIVLLAAAVISAVFSHDVVDSIIILVVVILNAIFGVIQEAKAEQAIEALKE MSSPNANVRRDGHVITVKSDELVPGDIVLLEAGDVVPADLRLLEANSLKIEEAALTGESV PVEKEVTILEGTDIGIGDRINMAYSNSNVTYGRGLGVVVGTGMNTEVGKIAGMLASEQET ETPLKQNLNQLGKMLTIAILVIAAVMFVVGMMNGRSWIDMLLTSISLAVAAIPEGLPAIV TIILALGTQKMAKKNAIVRKLPAVETLGSTDIICSDKTGTLTLNQMTVEALYTDGQVLSA STEIPADNMALKIMNFTNDTKIAQDGSLIGDPTETALVQFGLDHAFNVTEKVAAEPRVAE IPFDSDRKLMTTVHELKTGGFLVSVKGAPDELLKRCTEILSNGETSPLDETKRQEILKTN TSLAKQALRVLGMAYKYVETIPAEMSSELVEKDLTFAGLVGMIDPERKEAADAVKVAKEA GIRPIMITGDHRDTAEAIAARLGIIKEGDDDAVITGAELNELSDEKFAQVVGHYSVYARV SPEHKVRIVKAWQQEGKVVAMTGDGVNDAPALKAADIGIGMGITGTEVSKGASDMVLADD NFSTIIVAVEEGRKVFSNIQKTIQYLLSANLGEVLTLFIATMLNWDTLLPVHLLWINLVT DTFPAIALGVEPAERDVMSHEPRGKKSNFFSGGVLSSVVYQGITQGALTLIVYKMSIMFP AHTAANTNLSAQALYDLQHGDALTMAFATLGLIQLFHAFNVKSIYQSIFKVGLFRNKSFN YGILVSFLLLAATIVIPGFNDLFSVTHLDAYQWAIVAGTSFAIIPIVEIVKFFQRKAGKG A >gi|307679257|gb|GL456470.1| GENE 176 162252 - 162788 403 178 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227385040|ref|ZP_03868434.1| acetyltransferase, ribosomal protein N-acetylase [Jonesia denitrificans DSM 20603] # 9 175 2 168 173 159 47 7e-38 MKRKIIFETQRLIVREWQSEDEVELKKFLQDENVMYAYEHAFSDEEVANWLKWNLQSYQE YGYGLWALEKKRTGEVIGECGLTNQLVKGKSYPEIGYHLCVKEWHKGYAIEAAAAAKQYA FDVLNFPEVISTIRDTNLASMNVAIRNQMLVRDRYIKTYRGKTMPHYVFSVKNQKNED >gi|307679257|gb|GL456470.1| GENE 177 162858 - 163298 655 146 aa, chain + ## HITS:1 COG:no KEGG:EF1936 NR:ns ## KEGG: EF1936 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 3 146 1 144 144 260 98.0 2e-68 MVMRPNLGFYVQTINDIVKTTEDIGEVMNPYYEEVRQAIDKNKVNDLTAERIAEIQAKFK EGTEKYELMLKKVGTLKPTPQVLGIHKKFQHAYTEYVAGCNEMILATDPETGIDAELFNA SEEKQDQATDELTFAITRMSNILLKK >gi|307679257|gb|GL456470.1| GENE 178 163541 - 163702 207 53 aa, chain - ## HITS:1 COG:no KEGG:EF1934 NR:ns ## KEGG: EF1934 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 53 1 53 53 67 98.0 2e-10 MKQEEVIERLKEELNLPFFNGTLEEKNYSEADYQQIKKELIQYFDDYVRNVEN >gi|307679257|gb|GL456470.1| GENE 179 163736 - 164092 417 118 aa, chain - ## HITS:1 COG:no KEGG:EF1933 NR:ns ## KEGG: EF1933 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 118 1 118 118 184 100.0 1e-45 MSATKEQLELFLFYLSETHTKSLSLHDLVTSRPRPEEARILLNINEVFTYYHSARVLYTS VPALENNKSEPFFQAFENFYFELKQHFFNEEDETNQLNERLEEMKIAFEQLTDDYNVL >gi|307679257|gb|GL456470.1| GENE 180 164272 - 165606 1238 444 aa, chain + ## HITS:1 COG:pli0044 KEGG:ns NR:ns ## COG: pli0044 COG0446 # Protein_GI_number: 18450326 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Listeria innocua # 1 436 1 442 454 166 27.0 1e-40 MKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARY ITEEELRRQKIQLLLNREVVAMDVENQLIAWARKEEQQWYSYDKLILATGASQFSTQIRG SQTEKLLKYKFLSGALAAVPLLEKSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENL LPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQKISCDSGIFALNL HPQLAYLDKKIQRNLDQTIAVDSYLQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVR TGLVVANNLEEKTHRFIGSLRTMGTKVGDYYLASTGLTETEGLFFPQTLASVIVRQPAPP LQHGTEILGKLIYDKVTQRVLGAQLCSKNNCLEKINTLALSIQTGQTLTDLLQKDYFYQP SLTNIYDITNLMGASAYWRENDES >gi|307679257|gb|GL456470.1| GENE 181 165596 - 167062 1130 488 aa, chain + ## HITS:1 COG:no KEGG:EF1931 NR:ns ## KEGG: EF1931 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 488 1 488 488 870 99.0 0 MKVETLLEKKAMRQLLTVQQTILAGGTCSVSDLTAFLAVTKASFEKDLEDLHYFLKPFGQ DCQLTYDGQQLSITLSDFFSLNHLIEAFVKESIKFQLLDYLYRNKEFSIVQLTTKFMISE SSLFRKIKELNQLLAAFELQIKNGQLQGEELQIRYFYFQLYWYITPYEIHQKKTMSPLNK RIIEGIETGLGFTFNEHNALKVSLWLSITKKRLAVTSKKYQQLRKKMIDFKEDPLFKQVR QLFFRFSSRYSLELDEGESMIHFVFLITMSVLPESAFDEYSLIRGRRSAVSLADTFILEN VVLYYRPHKFEPTLEKTMAYYFSQIHGKLYFFKGELEVFDRAHIWEKEQQLSSRELASFS TTLLEKALACFDETYQPGDSLHELSLVKYLSVLTLIEFKMIGEIKIGIHLAMDALYQAAL TQVLMLSLKNMNGTLVERYQPEQTYDLIVTNYQQTSYQGTPEVYVLSELSSTYDVQQLKK KIRTLREK >gi|307679257|gb|GL456470.1| GENE 182 167339 - 168844 1778 501 aa, chain + ## HITS:1 COG:L0014 KEGG:ns NR:ns ## COG: L0014 COG0554 # Protein_GI_number: 15673228 # Func_class: C Energy production and conversion # Function: Glycerol kinase # Organism: Lactococcus lactis # 1 497 1 498 498 789 77.0 0 MAEEKYIMAIDQGTTSSRAIIFDKKGNKIGSSQKEFTQYFPNAGWVEHNANEIWNSVQSV IAGSLIESGVKPTDIAGIGITNQRETTVVWDKATGLPIYNAIVWQSRQTTPIADQLKEDG YSEMIHEKTGLIIDAYFSATKVRWILDHVEGAQERAENGELMFGTIDTWLVWKLTGDTHV TDYSNASRTMLFNIHDLDWDQEILDLLNIPRVMLPKVVSNSEVYGLTKNYHFYGSEVPIA GMAGDQQAALFGQMAFEPGMVKNTYGTGSFIVMNTGEEPQLSKNNLLTTIGYGINGKVYY ALEGSIFVAGSAIQWLRDGLKMLQTAAESEAVAKASTGHNEVYVVPAFTGLGAPYWDSQA RGAVFGLTRGTTREDFVKATLQAVAYQVRDIIDTMKEDTGIDIPVLKVDGGAANNDFLMQ FQADILNTAVQRAHNLETTALGAAFLAGLAVGFWKDLEEIKAFQEEGQQFEPIMAEEERE DLYEGWQQAVAATQQFKRKNK >gi|307679257|gb|GL456470.1| GENE 183 168865 - 170694 2081 609 aa, chain + ## HITS:1 COG:SP2185 KEGG:ns NR:ns ## COG: SP2185 COG0578 # Protein_GI_number: 15901992 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Streptococcus pneumoniae TIGR4 # 1 607 1 607 608 744 63.0 0 MTFSIETRRQSIDALKTQHLDVLIIGGGITGAGVALQASAAKMKTGLIEMQDFAEGTSSR STKLVHGGIRYLKTFDVEVVADTVKERAVVQSIAPHIPKADPMLLPIYDEPNATFNLFSV KIAMDLYDQLADVTGTKYANYLLTKDEVLAREPQLKSEGLQGGGVYLDYRNNDARLVIEN IKQAVADGAHAVSRVQAVGFLYNDEGKITGIQAKDLLTDEQFEIHADVLINTTGPWSDKL RGLDKNDSFTPQMRPTKGVHLVVDKSRLNVPQPTYFDTGKQDGRMVFVVPREEKTYFGTT DTDYHGDFQHPTVEQSDVDYLLEVVNNRYPEVQLTIDDIEASWAGLRPLISANGGSDYNG GNNGKLSDKSIDEVIDVVDRYQKNQTDKREIEEVLNHLEDSLVENKVNPSAVSRGSSLER SADGLLTLAGGKLTDYRKMAEGAMKMIQTILAEEYQKEFTLIDSKNYPVSGGKLNPATVD EELEALAKHGVSKGLSEKDALYLAHLYGSNVPTVFEMIDDAKVIPGLTLTETVSLNYAME EEMALTPVDFLLRRTNHLLFMRDRLDQVKAGVIEEMAQHYQWTAEERARHIETLEKVIEE SDLKNLKVG >gi|307679257|gb|GL456470.1| GENE 184 170702 - 171421 1157 239 aa, chain + ## HITS:1 COG:lin1574 KEGG:ns NR:ns ## COG: lin1574 COG0580 # Protein_GI_number: 16800642 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Listeria innocua # 3 235 4 236 272 258 59.0 6e-69 MGTSMMTQLFGEFFGTMILVLLGDGVCAAVNLKKSKAFASGWVVIALGWGAAVTLAVYMS GYMSPAHLNPAVTVAMAITGNFEWGMVLPYIVAQVLGGFIGGLVVWLAYLPHWNITEDKG AILGTFATGPAVRNYPANVLTEIIGTFVLVFGLLAFSQNDLAAGINPMLVGILVLGLGLS LGGPTGYAINPARDLGPRLAHQIIPVKTKGDSDWAYSWVPIVGPILGASLAAVIYLFTI >gi|307679257|gb|GL456470.1| GENE 185 171694 - 172233 476 179 aa, chain + ## HITS:1 COG:L175712 KEGG:ns NR:ns ## COG: L175712 COG4915 # Protein_GI_number: 15673319 # Func_class: R General function prediction only # Function: 5-bromo-4-chloroindolyl phosphate hydrolysis protein # Organism: Lactococcus lactis # 29 162 63 195 208 74 29.0 1e-13 MNGIMVLLVGAGYIGWVIYRNGRTYFRYKKNLKKYQTTHHLTDSDLEMYQRIMDELKKQI IYLNELTNKSRNLKKIEQVELGVASAKGIFKHLVKYPEAITHFSDFLYHKVPEILRASER FLSIKEDKLSTEEITLATNGILSTIRVLSESITDDYEKLVSEASEEISLSKKLVERKNG >gi|307679257|gb|GL456470.1| GENE 186 172226 - 173068 661 280 aa, chain + ## HITS:1 COG:no KEGG:EF1925 NR:ns ## KEGG: EF1925 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 280 1 280 281 466 99.0 1e-130 MAKQKNFYDTYDALFQKPKWSFFPVTRTDTAKQLPNPNKKVVKPQTKKKKKQKKNKKIIW IGIAVAIGFIVYIDLAEKDDYWDYSASSEDVYPLKEAGLTTTGPVDLEKPLKVTIEQNKL LFNQGYQIEIIGDADIETSGGKNFLILPSTEEYPDTKYLGNISFYEKRDYYTSAGMYLSG NLVNSLSDYLDTSKEFIKAYPIDKIADVQTGYILKRNQGYTDISKYYLFKDGTGFELEVS VDQLEKVKDPKDYSSFVKTYAKEVAFIEKSFKFESTDEES >gi|307679257|gb|GL456470.1| GENE 187 173387 - 174895 752 502 aa, chain - ## HITS:1 COG:no KEGG:EF1923 NR:ns ## KEGG: EF1923 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 23 502 1 480 480 867 98.0 0 MSLIKTQDAIKTFLLSKKTQKKLAVFLYLAKQTNLDLSSVARKFDLSTKNLSIYLREIQE DLATLPENTLEIQIHHGKISLHTTSNDFLSHYFLLFNYYCVHSTDFILFQAIIKKENNSV WKVSQETNFSSSYIYKRLNNINKLFGLYGISVHFSPSASKVITGSEFQVLYAFLDVYWTI FLNTLALPRYTSTYFEDILTQHIKPEILERLEHASLLKLNLLLHIAKYRFPYTCEDDLQK EFEEHPYLRLFSDSKQTIFCSQSNFSEDQQRVVDIIAPIAIDNFDSAKRAKDLLVALNEI SCPEYFYVDSLLTNFCEVFQIPKMREFDRHYFLLILFKNIIYNQLFISQQPNTAILDFLV NKNSTYQKDLQKKIYAFYRNFSAHSPYQLRFKDQENPIWTCELLLRIYKHYSPRKKIKIG VAYSRDFYIASFIMMKIKQAFSEDIIFERTDFSSCDIVITDYPLFDLPKEIDRIYILEEE LTREDWELIFSKISIAIFDLQY >gi|307679257|gb|GL456470.1| GENE 188 175014 - 176924 1464 636 aa, chain - ## HITS:1 COG:PA1950 KEGG:ns NR:ns ## COG: PA1950 COG0524 # Protein_GI_number: 15597146 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Pseudomonas aeruginosa # 323 621 2 305 308 181 36.0 4e-45 MNIKDIAKLAGVSASTVSKIINNKDQTISKETRERVLKIVRDYNYTPYSANLVTNSTTKT FVLLLNSHETFEAWVTSFIDKAQENGYNCLILNSHGSLEQELKNITSPTLKQASGIIWDP INENSKQYAKFIEELTIPYYFVNHSTNELPSLAGLYEEASYVLTQELLQNNHKKISYFVT NPKYKEAIIAGYKKALFDVNLPFSKENILTTIPADFSNQLITDGITGILTDDYTQAVFLE QLLKQSGLRTPDNYSLLAIKRKIDRSFLPDHISSVLLDTETFGSQLALSLLNKRKEKTAL INEAEKLVLDHKNTLGMSSVNPHSKMIVVGSLNVDNYLYSTNLPHNGKTNFLSSYAKFPG GKGLNQAVGLTKLGHQATLIGCLGSDTDANYLYKELEKYHVTTDGITRIQDTETGQAYIY VETSGDSMISILPGANTALTPKKIAQQKHLFMDASFCLIQTEIPLSAVKKACEIAQHSGV PIILKPAAIHHIPVNILEKVDFFIPNEDELLELQPDTGTLEEKAAYFLEMGVKNVIVTLG KKGVLLKTHQVCHYFPATENIAVDSTGASDSFISALASYLSKGYPTEAAIQIAIQAAGFS VSKEGVIDSLVDHVTLENYLIKKEPALFAHRNTCVD >gi|307679257|gb|GL456470.1| GENE 189 177107 - 178027 1045 306 aa, chain + ## HITS:1 COG:STM0051 KEGG:ns NR:ns ## COG: STM0051 COG1957 # Protein_GI_number: 16763441 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Salmonella typhimurium LT2 # 8 300 7 300 306 266 48.0 5e-71 MDTKKRPIIIDTDPGIDDAVALAIALNHPNLEVRLITTVAGNVDVEKTTNNALKLVDFFG KKVPVAKGCNCPLLIQLEDSAEIHGETGMDGFEFPQPISTCLDIHAVEAMRKEILSSDVP LTIVPIAALTNIALLLTLYPEVKENIAEIVMMGGSLARGNTNTSAEFNTYVDPHAAQIVF QSGVPLTMVGLDVTSQAVLTNHEVTAIRALGRVGEMFYGLFRHYRGGSLTTGLKMHDVCA IAYLTSPELFETTETFIEVALEGPAAGATVADLKMKYHKNTNAVACIDVNVEAFQKWVVE KMKAVN >gi|307679257|gb|GL456470.1| GENE 190 178044 - 179417 1344 457 aa, chain + ## HITS:1 COG:VCA0665 KEGG:ns NR:ns ## COG: VCA0665 COG3069 # Protein_GI_number: 15601423 # Func_class: C Energy production and conversion # Function: C4-dicarboxylate transporter # Organism: Vibrio cholerae # 1 456 5 456 459 223 36.0 6e-58 MIESLLVLVVLVVVAYLIVKNYHPALSLIIGALVLLACAWMLGHPIYPAGEGTGFGLFDI FLKFKDTIIAQVSSAGIVIMILFGYSGYMNAIGANQMAVNFLVKPLMKIKRKSLFVPVVF LIGNLMSLVVPSASSLAIILMSILYPMLASMGISSLTAAGVIAMTATIMPTPLGADNVIA ANTLGYDVLNYVVWNAKISLPSLLIIAVAQYFWQKYCDKKEGEAAYVSLNEEGLSKQKEF DVPKFYAILPILPLLLIVGVGIAGMFIKGITMDIFVLTFISFFIAVLVETLRLKSFKKVQ DTAVEMFKGMGQGFSQVVMLVVGGSLFTSAIQTLGIIDSIMASVEASSSAGIVTTLIFSG ATTLFGILSGGGLAMFYAVIELIPGIAEKAGIDGILISLPMQMIANLTRTISPVAAVVMI VASTVGVSPIRILKRTSVPTIIGIISVIVLSILLLPY >gi|307679257|gb|GL456470.1| GENE 191 179429 - 179905 324 158 aa, chain + ## HITS:1 COG:no KEGG:EF1919 NR:ns ## KEGG: EF1919 # Name: not_defined # Def: acetyltransferase # Organism: E.faecalis # Pathway: not_defined # 1 158 1 158 162 304 99.0 6e-82 MKIRVADEKELPMILQFLTEVKAYMDVVGITQWTKDYPSQGDIQEDITKKRLYLLVHEEM IFSMATLCMEQEQDFVWLKRFATSPNYIAKGYGSLLFHELEKRAVWEGRRKMYAQTNHTN HRMIRFFESKGFTKIHESLQMNRLDFGSFYLYVKELEN >gi|307679257|gb|GL456470.1| GENE 192 179996 - 181024 1301 342 aa, chain - ## HITS:1 COG:SP1506 KEGG:ns NR:ns ## COG: SP1506 COG2706 # Protein_GI_number: 15901353 # Func_class: G Carbohydrate transport and metabolism # Function: 3-carboxymuconate cyclase # Organism: Streptococcus pneumoniae TIGR4 # 1 341 1 335 337 345 53.0 6e-95 MLEQILLGTYTRRASQGIYKIALDTTQGRLTEATLLLEETSPTYLALSQKGELFSVTSVD GEGGTAAYQPEMDHFNLLNKVTEEGAPPCYVAVDENRQLVYAANYHQGIVHVYRILEDGS LEDADKVIHTEPTGPHENQNNAHVHYTDLTPDQRLVVCDLGTDRVYTYNVSLDGKLSEIA QFVTEPGTGPRHLVFHPTKSLAYLFGELDSTVSVLSYDETDGSFTELQKVSTLPADYDAF NGGAAIRISSDGRFLYASNRGHNSIAVYAVSENGEAIERIQLISTEGDIPRDFDLDPSED FIVVANQDSDNLTLYRRNQETGLLEMIQKDVAVPECVCVLFV >gi|307679257|gb|GL456470.1| GENE 193 181216 - 182469 267 417 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 154 395 248 444 466 107 32 4e-22 MYDNTDNNGTVRCSFCGKTQEEVKKIVAGPGVYICNECIDLCKEIIDEEFYDEAVRELTD VPKPQEILNVLNEYVIGQERAKRTLSVAVYNHYKRVNQSETAATQDDVELQKSNICLIGP TGSGKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQSADYNVERAEKGI IYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDT TNVLFIVGGAFDGIETIVKNRLGEKTIGFGKTNSALNEEESIMQHIIPEDLLKFGLIPEF IGRLPVMAALDKLTNDDLVRILTEPKNALVKQYQKLLSLDDTKLEFEPEALKAIAAKAIE RNTGARGLRSIIEEIMMDVMFDVPSDESIEKVIITKMAAEGTGKPTIIYNKKDKEAV >gi|307679257|gb|GL456470.1| GENE 194 182567 - 183148 689 193 aa, chain + ## HITS:1 COG:SP1568 KEGG:ns NR:ns ## COG: SP1568 COG0218 # Protein_GI_number: 15901411 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Streptococcus pneumoniae TIGR4 # 1 189 3 191 195 296 74.0 1e-80 MNVHNAEIVISAVSPKQYPESQLPEIALAGRSNVGKSSFINTLINRKNLARTSGKPGKTQ TLNFYLIEDALHFVDVPGYGYAKVSKTERAKWGKMIETYITQREQLRAVVSLIDLRHPPT QDDIQMYEFLKYYDLPVIIVATKADKIPRGKWNKHESVIKKALNFDKQDDFIIFSSETKE GKEAAWTAIEKFL >gi|307679257|gb|GL456470.1| GENE 195 183165 - 183317 236 50 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGLKFERSNDLDKLFDSFAVDPLKKEVPLEELAKQRQEVKKEEAKKQAKE >gi|307679257|gb|GL456470.1| GENE 196 183495 - 183797 388 100 aa, chain + ## HITS:1 COG:L122982 KEGG:ns NR:ns ## COG: L122982 COG0759 # Protein_GI_number: 15673654 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 77 1 77 88 97 59.0 6e-21 MKNPLIGGVRFYQRFISPGLPARCRYYPTCSQYMIDAIHTHGSVKGTTMGVARILRCHPF VKGGIDYVPLKFRLTKNPDETYHGPYTYRRNKKTEVEKDG >gi|307679257|gb|GL456470.1| GENE 197 183800 - 184681 1136 293 aa, chain + ## HITS:1 COG:L118696 KEGG:ns NR:ns ## COG: L118696 COG1940 # Protein_GI_number: 15673470 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Lactococcus lactis # 1 285 1 283 293 262 46.0 6e-70 MAILAFDLGGSSVKYGVWTGKELTNQGSFPTPGSWEEMKAHLYSVYADKRNESISGVAFS SPGVVDEKSQQILGISAIPYIHHFNIYEELEALFGLPVTIENDANCAGLAEIYEGAAKGK KEVLFVVIGTGIGGAIFRNGELYKGAHLYGGEFGLNFLSNGQTFSEIGTAVKMAQRYCER IGVEKQAVTGEEVFELAQRGDEIAREEVNNFYDYLTQGLFGLQFSYDPEMIVLGGGVSAK EGLLAEINRRMLTHLQTFELKDFVPEIVTCHYQNDANLIGAAANFQAKTNWEL >gi|307679257|gb|GL456470.1| GENE 198 184722 - 185333 619 203 aa, chain - ## HITS:1 COG:SPy1879 KEGG:ns NR:ns ## COG: SPy1879 COG4129 # Protein_GI_number: 15675698 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 3 152 15 164 183 130 44.0 2e-30 MIVGRFRLGMRTLKTAIAVMLCILLFQFSHRGSPMIACLAAVFSLRQDLNTSLSFGKSRI IGNTLGGFLALLYVLAQDYFPNQHLVELLLLPLLVIIVIVVSDGINNNAGIISATATLLM ISLSIPQSDSFQYAMERVLDTFIGTFIAIGLNVFLQPKPAEEAHEISEDLAELEKKEKEL ETLRQQVQARIAAEENTDDKANK >gi|307679257|gb|GL456470.1| GENE 199 185436 - 186395 971 319 aa, chain + ## HITS:1 COG:lin1983 KEGG:ns NR:ns ## COG: lin1983 COG4129 # Protein_GI_number: 16801049 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 1 312 1 312 327 224 41.0 2e-58 MKIGLRTVKTAISAALAMIIAEKLGLLYAPSAGIISVLSVTSTKKTSVMTGIYRLLSLAL ATILAYICFTFLGFTAIAFGIFLLLFIPAAVYFQLSDGIVVSSVLVTHYLVEKNLSWAII GNEFLLMSIGVGLALLANSYMPDTEKRLREDQEVIETMFRKILREMALHLNNAAGERNLV MHCADLKTFIRTGETWAKNHAENQLLSTNTYYLEYFAMRKMQSNILKNMLELLEDITVDA QQVRYIQQLLEYTAETFAENNDGQEIMNRIKTVYETYRTKPLPQTRSEFENRARLFQFLQ LFQSFIQVKADFAKLQLDK >gi|307679257|gb|GL456470.1| GENE 200 186522 - 187466 1060 314 aa, chain + ## HITS:1 COG:no KEGG:EF1909 NR:ns ## KEGG: EF1909 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 314 1 314 314 471 100.0 1e-131 MDNAQVKRKHFRFPAYDDEQGVKLPTDNERNLFQDDLIGKAMSGSRRTATSAEDTRQSTP SVQQPTTNQSTTNKQTQQLTAAQQEQLARHRSNLPDYTKHASKATKNKQATKKNNSLFGT PKGNGWTQTYKKKEVVAKPSRPAASPLVQKTTPSYFVPKYIPASVIPEEQEPSFTEEELL KAMKKDRRSYVILDDEPTAFQVKDTEEDPTVRKFNIPTSEPEIPLTRRQYQQIKPDLERF GEDALDLRSRSRLNAAKKNAKSQTAYGKKLAKANAQVEPEAPVTEEKKKGILDKPLSGML EDSSSVLENSKYFS >gi|307679257|gb|GL456470.1| GENE 201 187621 - 188958 1586 445 aa, chain + ## HITS:1 COG:lin1646 KEGG:ns NR:ns ## COG: lin1646 COG0773 # Protein_GI_number: 16800714 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Listeria innocua # 8 439 3 433 447 552 60.0 1e-157 MGNQENKLYHFVGIKGSGMSSLALVLHQKGYNVQGSDVEEYFFTQRDLEKSGVPILPFNA DNIDKDMIVIAGNAFPDTHEEIARAIELGAEVIRYHDFIARFIEPYTSIAVTGSHGKTST TGLLAHVLSGINPTSYLIGDGTGHGEPDADFFAFEACEYRRHFLAYSPDYAIMTNIDFDH PDYYKSIEDVFSAFQTMAHQVKKGIFAYGDDKYLRQLESEVPVYYYGVSEEDDIQARNIQ RTTEGSSFDVYHKADFVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSFKGV KRRFSEKKVSDMIIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEF AEALDLADEVFLCNIFGSARETQGEVRIEDLGEKIQKGGQVITEDNVSPLLDFENAVVVF MGAGDVQKFEQAYETLLSNTTRNVL >gi|307679257|gb|GL456470.1| GENE 202 189156 - 189641 641 161 aa, chain + ## HITS:1 COG:FN0816 KEGG:ns NR:ns ## COG: FN0816 COG2030 # Protein_GI_number: 19704151 # Func_class: I Lipid transport and metabolism # Function: Acyl dehydratase # Organism: Fusobacterium nucleatum # 14 137 4 127 134 70 29.0 1e-12 MNIGKPRKLGKTIEDIEEGDSLSLTESIEDKDLLLYLGLTNDANPLYIQHDYAQKTEYEK PIVPSIMLMGIITSAISKHLPGPGSHVVNFSVNFVEPVFHYETLTFQLEVIKVDKMKDVI TISVEAVNEQENRVLDAVVMVQPPQVTIDELTEKEGTLTYE >gi|307679257|gb|GL456470.1| GENE 203 189634 - 190320 938 228 aa, chain + ## HITS:1 COG:SP1972 KEGG:ns NR:ns ## COG: SP1972 COG0670 # Protein_GI_number: 15901795 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Streptococcus pneumoniae TIGR4 # 3 228 10 235 235 160 47.0 2e-39 MNNQEYIQTGTGLNKFYAKIYGFLALGIGISAIMAYAMTTVFLPVLATLFQSSLAFWMIW LVEIGLVLYLGAKAQKNPTIAIAGFVAYALLNGVTLSVTLLMYTGGTVAGAFLSAAATFG AMSLVGVFTKKDLSAVGHAAYSALIGIIIAMLLNMFLLHSSAVEFFISILMVLIFSGITA YDNQRIRQVYAQTGDQAGTGMAVFFALQLYLDFINLFLAFLRIFGKNN >gi|307679257|gb|GL456470.1| GENE 204 190510 - 192312 1290 600 aa, chain - ## HITS:1 COG:L58914_2 KEGG:ns NR:ns ## COG: L58914_2 COG0584 # Protein_GI_number: 15673979 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Lactococcus lactis # 353 593 1 240 249 240 48.0 6e-63 MFSYFKNSIVNTLDFLKGTTAYFRDVLLMHGFMLFVLLPLLTSLSKLVLKEGGIDYISYD NLGAIATQHPYVLLTFLLIGLLILLALFFEFTFLLLSVYFIKKKQPITLTQLLHGTLLQI KKVRGITFLFFLAYFFLILPLSGLTFRSYLLTRVKIPAFILDFIFANRVIIIIGFVLLEL IILYLAIRLAFALPELILRDVGFRESLKRSWQITKRRFFQILGQFIIIGGTVLGIFTAGY FLIFLGQTAVETFKPEWSLPSAVIAMTLLQVMMLLNLVLSSVAIFYIIVDDMEDEGILPD TPEWFTPKSEVRVEWTTFRVVLFCLIAIIFGIGVGTYNTNYLSHTPDRKPVTISHRGVNG NNGVQNTLDSLIETNKAKPDYVEMDIQETKDHQFIVMHDFNLRALTGVNKRPNQLTLKEL TNMNVTENGQTAKMVSFDDYLAKANQLKQRLLIEIKTTPQDSPDLVQRFVKQYRENILEN GHILHTLTYDTAMALKKEEPRFYVGYVIPFNIVGPPKMPVDFFTMEYSTMNRNFVNAAHH DGKKVYAWTANDEDVMTRMIFYGVDGIITDQLSLLNETMKTDLENPTYSDKLLNFAIGMG >gi|307679257|gb|GL456470.1| GENE 205 192413 - 193012 720 199 aa, chain - ## HITS:1 COG:L114884 KEGG:ns NR:ns ## COG: L114884 COG0398 # Protein_GI_number: 15672877 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 7 197 10 201 201 178 53.0 7e-45 MSVTLSRKIVNIISILGIVATIIATIYFIRLGVFKDINALRGLVGQSVILGPIIFMLIQI IQVVIPIIPGGVSCAAGVLIFGPTMGFVYNYVGIALGSIIIFLLGRNYGKPFIMSLVSDK TYNKYIGWLDNEKRFERLFALAIFFPIAPDDALCLMAGLTKMSVKKFTLIILLAKPASIY LYSLALIYGGTFLTSLLGM >gi|307679257|gb|GL456470.1| GENE 206 193243 - 193617 435 124 aa, chain - ## HITS:1 COG:no KEGG:EF1902 NR:ns ## KEGG: EF1902 # Name: not_defined # Def: glyoxylase family protein # Organism: E.faecalis # Pathway: not_defined # 1 124 1 124 124 246 99.0 2e-64 MKLDMVGIIVNDMTQALSFYQTLGFNVLGEASPDYTELQNNGVRISLNSLQMITGVYGFA PSQQGDKIELAFLCETAAEVDNTVKKMSQAGYIVFKEPWNAPWGQRYAIIKDVDANLISL FAPL >gi|307679257|gb|GL456470.1| GENE 207 193814 - 195175 1493 453 aa, chain + ## HITS:1 COG:SA0956 KEGG:ns NR:ns ## COG: SA0956 COG1914 # Protein_GI_number: 15926690 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Staphylococcus aureus N315 # 17 451 13 448 450 482 58.0 1e-136 MKEKKTEKMLNYANGPSLEEINNTVEVPKNASFWRTLLAYSGPGALVAVGYMDPGNWITS IAGGAEYKYTLLSVILLSSLVAMLLQSMAARLGIVTGMDLAQATREHTSKRTGVALWVVT ELAIMATDIAEVIGGAVALQLLFGFPLLIGVLITTFDVLLLLLLTKLGFRKIEAIVSCLI AVIFFVFAYEVALADPNVGEVLRGFIPDTKIATDKSMLFLALGIVGATVMPHNLYLHSSI AQARKFDRNDDAEKAKAIRFTTWDSNIQLTVAFVVNCLLLILGGALFYGTNSELGKFVDL FDALKNPDIVGNIASPVLSILFAIALLASGQNSTITGTLSGQIVMEGFIHLKMPLWARRV LTRLLAIVPVIICVIIYGGSETAVEDLLLYTQVFLSIALPVSIIPLTMYTSDKKLMGQFA NPAWVKFLAWIIAIALTLLNLFLIYGTLTGLTN >gi|307679257|gb|GL456470.1| GENE 208 195283 - 195807 738 174 aa, chain + ## HITS:1 COG:BH2480 KEGG:ns NR:ns ## COG: BH2480 COG0806 # Protein_GI_number: 15615043 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RimM protein, required for 16S rRNA processing # Organism: Bacillus halodurans # 1 171 1 173 173 191 56.0 7e-49 MTDYLNVGKIVNTQGIKGEVRVISKTDFPEERYQKGATLLLFQEKKAPIELVVKSHRKHK NFDILSFEGHPNINDVEKYRDGILKVAKDNLAELAEDEFYYHQIIGATVYDETGSELGKI KEILSPGANDVWVVQRPKKKDLLLPYIEGVVTKVDVENQRIDVDIPEGLIDDEN >gi|307679257|gb|GL456470.1| GENE 209 195797 - 196537 731 246 aa, chain + ## HITS:1 COG:lin1906 KEGG:ns NR:ns ## COG: lin1906 COG0336 # Protein_GI_number: 16800972 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-(guanine-N1)-methyltransferase # Organism: Listeria innocua # 1 239 1 240 245 310 61.0 1e-84 MRIDVLTLFPRMFEGPMGESIIGKAREKQLLELNVSNFRDFSDNKHQTVDDYPYGGGAGM LLKVQPIYDNLKAIEEETNQQPKRVILLDPAGKPFNQKMAEEFSQEEHLVFICGHYEGYD ERIRTMVTDEVSLGDYVLTGGELGAMVMIDATVRLLPDVLGNNLSAQTDSHSTGLLEHPQ YTRPAIFNDMEVPAVLTNGNHKLIAEWQLKESLRRTFLRRPDMLESVEMTPEMLKLLEEI KQEEQK >gi|307679257|gb|GL456470.1| GENE 210 196633 - 197028 654 131 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227519245|ref|ZP_03949294.1| 50S ribosomal protein L19 [Enterococcus faecalis TX0104] # 1 131 1 131 131 256 99 6e-67 MAEVTIRIFGNKEKDKMNPLIQELTQEQLRTDIPAFRPGDTVRVHAKVVEGTRERIQLFE GVVIKRRGAGISETYTVRKVSNGVGVERTFPLHTPRVAQIEVVRYGKVRRAKLYYLRALH GKAARIKEIRR >gi|307679257|gb|GL456470.1| GENE 211 197399 - 198061 340 220 aa, chain + ## HITS:1 COG:no KEGG:EF1897 NR:ns ## KEGG: EF1897 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 220 1 220 220 377 100.0 1e-103 MKQDDGRIVWKNLSDLKLILLINQFIEKHEIKSSRQYHRKLLENPNSAPSMWFINQKYGS WKNLLVSLGCDNGEYGKWAKISEKDLLKIVESFITVEKITSQRMYEKRSVGKDVPSLSTL KKRFGDIRYLFRKNTEKSSFTDFELMIELRNEIVRLKLQDDLSMTKFRKLVQSPKLPSVD TIMKRTNKNWEELMTEIGFDYRKIKINKQRNNLSKKKKTK >gi|307679257|gb|GL456470.1| GENE 212 198141 - 201368 3266 1075 aa, chain + ## HITS:1 COG:BH0361 KEGG:ns NR:ns ## COG: BH0361 COG4932 # Protein_GI_number: 15612924 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Bacillus halodurans # 275 683 1179 1531 1661 68 25.0 5e-11 MIKPIFKKWRLFAALALLGQTIVGAIDPMIVFADEIAHPQTVTVELDLAHQYVVEGTFSD GRPMSEVTVPHYAVYNGVKQDVFCIEPGVPIDNEFTPGYEKNPLPDMPEKAKLVSVLWKK AGTDVDTHIVAQKMIWQEVNGYTLHSIKRLNGSAVNIAAIEAKINQAIADYQKKPSFHNS TAKIVLGQSTTMTDTNNLNLSEFDEVVENTANIDYRVNGNQLIITPNASSKESGVLTLKK SAGTGTPVAYKKVGQQTLMAGAIDKPNTYTVKIDVETEGSLKIKKVDKESGAIVPGTVFH LDFGKTLPAKDVTTDKEGIATLDGIPHGTKVTITEKSVPAPYTIDTIAMTATIKAGETIF MTSKNTREKGQIILDKTGIETGSDLWNDNYSLAGNTFAIRKDSPTGEIVQEMTTDEKGHA ETPKEIANALELGTYYVTETKASNGFVNTFKAVKVELKYANQTVALVTSNIKGQNQEITG ETTLIKEDKDTGDKTQGRAVFEGTEYTLFTAKDGKAVKWSEAFKPELVKGTKASDETVTL ALDEKNQAAVKHLAINEYYWQETKAPEGYTLDETKYPVSIKKVDDNEKNAVITRDVTAKE QIIRFGFDFFKFAGSAAGTAETGFNDLTFKVSPLEGTNEITGAEDEAITAYNEQLGFDGY GKFENLPYGDYLLEEVEAPEGFQKITPLEIRSTFKENKEDFVKSEYVFTITEQGQKQPIK TVTVPYEKLTNKAFSVSLNRLMLYDLPEEEDSLTSLATWKDGNKELSTLDSTELVDKLSY NLHEIKEDWYVVAQAIDVEATKDAQEKDEKAKPVVIAETTTTLANKEKTGTWKIRHKLTT EQVLDKTIVLFNYVYENKEAFEAGDEPVAKDASLNNQAQTVNCTVERHVSIQTKAHLEDG SQTFTHGDVVDMFDDVSITHDVLDGSKEAFETILYALLPDGTNKEIWKSGKIDYEVNDKE FTKTMLAEKVDTGKFPESTKFTFAEINYDKDENINGKHNEDLKEKNQTLTPKKVPTTPRT PKQPETPTVPSGYQESSPTVKTFPQTGEKNSNVLLFIGFTLIFATAGYYFWNRRN >gi|307679257|gb|GL456470.1| GENE 213 201481 - 201795 442 104 aa, chain + ## HITS:1 COG:no KEGG:EF1895 NR:ns ## KEGG: EF1895 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 104 1 104 104 195 100.0 5e-49 MELKFVVPDMAETFGKLSYAGEGEILTEGYGRNTTVIGRSYHLYSSKQRADDIEVVVAAE AGEKDFDQDQPLKAVNPHLVAKGYEIENRGFTDYVLYVDDLVKE >gi|307679257|gb|GL456470.1| GENE 214 201808 - 202182 497 124 aa, chain + ## HITS:1 COG:no KEGG:EF1894 NR:ns ## KEGG: EF1894 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 124 1 124 124 228 100.0 8e-59 MRLTEGIVVDSVLTFGKLRFSALRREVRKQNEDGTVSNEVKERTYNLKSSAQGRMIQVSI PANVPLREFAYDAEVELVNPIVDTVANYVFREGTTVNWFIKADDLVLKRQPNQGNSTNQI EGKK >gi|307679257|gb|GL456470.1| GENE 215 202183 - 202251 64 22 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKIMEINVEHILDCLDQYGKGE >gi|307679257|gb|GL456470.1| GENE 216 202306 - 202536 262 76 aa, chain + ## HITS:1 COG:no KEGG:EF1893 NR:ns ## KEGG: EF1893 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 75 42 116 117 124 100.0 2e-27 MHQGLLGENSDSEDDFDVQDWLEEEESFFMVVEVNENLCRQAESVLEEIGVEMPDAIEGF LNQLVEKKQFPVVING >gi|307679257|gb|GL456470.1| GENE 217 202606 - 203622 726 338 aa, chain + ## HITS:1 COG:BS_ydcQ KEGG:ns NR:ns ## COG: BS_ydcQ COG1674 # Protein_GI_number: 16077553 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Bacillus subtilis # 31 328 41 335 480 266 46.0 3e-71 MYKEHRIRARDQHLVYHFILGWLIALLISWMGVFYFQEFRQFDISRVSLSTIETVWSMKE LICLLGSLGFSGAMLLLYIHFFPDHWRSLWHRQKLARMILENHWYEVKQTQSEGFFKDLN SSRTRETISYFPKIYYRMKEGLLSIRVQISLGKYQEQLLKLEKKLESGLYCELVEKELKD SYVEYTLLYDMIANRIGIDEVVAENGTLRLMKNQVWAYDSLPHMLIAGGTGGGKTYFLLT IIEALLKSDAELFILDPKNADLADLGTVMPHVYSQKEEISACVEDFYERMIARSKAMKEM PNYKPGENYAYLGLPPNFLIFDEYVAYMGANRFPTSIE >gi|307679257|gb|GL456470.1| GENE 218 205283 - 206089 127 268 aa, chain + ## HITS:1 COG:no KEGG:BpOF4_20219 NR:ns ## KEGG: BpOF4_20219 # Name: not_defined # Def: putative COX1/OXI3 intron 2 protein # Organism: B.pseudofirmus # Pathway: not_defined # 3 268 34 298 304 223 46.0 8e-57 MRETKGEKWVCNSHISDKKKNQIKKEIKQRIKDIQKSPTAQNALLFNALVLGVHNYFRYA THINLDLNRMNYVLSFTTYNRLSNCSTRCYPNKASPTYKKFYSTTMKTYKVAGVYLYPLC DVSTKTIYGFNTEDTPFTPFGRQRLEHKSLQSLVYQELRKLMESKILNRMVEYLDNRISR YSMKSGKCEITKQFLPAKAVHCHHYLPKSLGGDDKFDNLRIIHKDIHLLIHTTNKMIIDH YVNELKLLPEQIAKINLYRKMCNLQNIQ >gi|307679257|gb|GL456470.1| GENE 219 206191 - 206547 379 118 aa, chain + ## HITS:1 COG:BS_ydcQ KEGG:ns NR:ns ## COG: BS_ydcQ COG1674 # Protein_GI_number: 16077553 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Bacillus subtilis # 1 110 337 446 480 141 60.0 3e-34 MLTTKESAVILNKLKQIVMLGRQSGFFLILACQRPDAKYLGDGIRDQFNFRVALGRMSEL GYSMMFGEVDKNFFMKRIKGRGYVDTGGSVISEFYTPLVPKGYDFLESIKQVAQSKEK >gi|307679257|gb|GL456470.1| GENE 220 206634 - 207074 507 146 aa, chain + ## HITS:1 COG:no KEGG:EF1889 NR:ns ## KEGG: EF1889 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 146 1 146 146 273 100.0 2e-72 MTEDDSLQYAKENKKEIISSVIDGKEKEEEKTAIFMAGSPGAGKTEAAQTLTVLNSNLCV IDADKFRVLFPGYVGNNSDEFQRGSSLLVDAALDLVLKKGYSFILDATFATSKVKQNIER ALKKNYNVLVYYVYQDPFIAWDFTKK >gi|307679257|gb|GL456470.1| GENE 221 207232 - 207309 74 25 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDIDNVELTLPISYTKEILEEELHD >gi|307679257|gb|GL456470.1| GENE 222 207302 - 207469 271 55 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTEKEKVEEIMEKYNRNFSTLQKNASAKELKTVFKFVADESNRKQRELIGLDKEK >gi|307679257|gb|GL456470.1| GENE 223 207818 - 209002 953 394 aa, chain + ## HITS:1 COG:BS_ydcR KEGG:ns NR:ns ## COG: BS_ydcR COG2946 # Protein_GI_number: 16077554 # Func_class: L Replication, recombination and repair # Function: Putative phage replication protein RstA # Organism: Bacillus subtilis # 66 394 27 352 352 255 42.0 9e-68 MVQRNLDYRLLKDRRNEYGISQNKLATACGLSRPYLNQIENGGVTASTKTMRKIFNQLES FNPDLPLSLLFDYVRIRFPTTDARKIIQEILHLKFDYMLHEDYAFYSYQEQYVMGDIVVM LSHEEDKGVLLELKGRGCRQFETFLLAQKRSWYDFFEDCLKAGGVMKRLDLAINDLVGLL DIPDLTKKCQKEECISLFRTFKSYRSGELLKADEKDGMGNTLYIGSLKSEVYFCLYEKDY EQYIKLGIPLDKTETKNRFEIRLKNDRAYHAIQDLLKGRSIESTTFSIINRYLRFADKVE GKRRTNWPLNEQWGRFIGRNRKEIQLTSEPKPYTIERTLNWLGRQVAPTWKMAKELDRLN QTTYIQDMVQNARLSDRHKKILEQQSMAIENLII >gi|307679257|gb|GL456470.1| GENE 224 209035 - 209133 154 32 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLLAFGGSMLSVTVMCLMHASVAANQAMEKKV Prediction of potential genes in microbial genomes Time: Tue Jul 5 20:47:24 2011 Seq name: gi|307679256|gb|GL456471.1| Enterococcus faecalis TX0411 genomic scaffold Scfld427, whole genome shotgun sequence Length of sequence - 151699 bp Number of predicted genes - 149, with homology - 142 Number of transcription units - 81, operones - 43 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 88 118 ## 2 1 Op 2 . - CDS 78 - 1187 1366 ## COG3964 Predicted amidohydrolase 3 1 Op 3 . - CDS 1196 - 2284 1197 ## COG3589 Uncharacterized conserved protein 4 1 Op 4 . - CDS 2293 - 2541 148 ## EF0835 hypothetical protein - Term 2566 - 2608 5.0 5 1 Op 5 . - CDS 2618 - 3931 1439 ## COG1455 Phosphotransferase system cellobiose-specific component IIC - Prom 3974 - 4033 10.2 - Term 4026 - 4061 -0.8 6 2 Op 1 . - CDS 4062 - 4757 1064 ## EF0833 hypothetical protein 7 2 Op 2 . - CDS 4777 - 5556 944 ## EF0832 hypothetical protein 8 2 Op 3 . - CDS 5572 - 5928 471 ## EF0831 hypothetical protein 9 2 Op 4 . - CDS 5959 - 6315 593 ## EF0830 hypothetical protein 10 2 Op 5 . - CDS 6330 - 6653 527 ## EF0829 hypothetical protein 11 2 Op 6 . - CDS 6619 - 8538 1647 ## COG3711 Transcriptional antiterminator - Prom 8613 - 8672 4.9 - Term 8702 - 8745 4.4 12 3 Tu 1 . - CDS 8909 - 9874 1215 ## COG0673 Predicted dehydrogenases and related proteins - Prom 9894 - 9953 2.5 - Term 9927 - 9963 4.3 13 4 Tu 1 . - CDS 9976 - 10317 396 ## COG2337 Growth inhibitor - Prom 10343 - 10402 6.7 - Term 10427 - 10479 7.3 14 5 Op 1 . - CDS 10486 - 11115 779 ## COG0572 Uridine kinase 15 5 Op 2 . - CDS 11112 - 11207 89 ## + Prom 11113 - 11172 6.5 16 6 Tu 1 . + CDS 11290 - 11745 496 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 11751 - 11788 6.6 - Term 11739 - 11776 6.6 17 7 Op 1 . - CDS 11781 - 12461 788 ## COG1011 Predicted hydrolase (HAD superfamily) 18 7 Op 2 . - CDS 12458 - 13240 680 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases + Prom 13286 - 13345 6.2 19 8 Tu 1 . + CDS 13571 - 14179 1003 ## PROTEIN SUPPORTED gi|229546665|ref|ZP_04435390.1| 50S ribosomal protein L25/general stress protein Ctc + Term 14218 - 14268 16.2 + Prom 14335 - 14394 6.9 20 9 Tu 1 . + CDS 14431 - 14754 429 ## EF0819 hypothetical protein + Term 14775 - 14815 4.1 - Term 14757 - 14808 8.6 21 10 Tu 1 . - CDS 14820 - 15068 386 ## COG2261 Predicted membrane protein - Prom 15114 - 15173 5.3 22 11 Tu 1 . - CDS 15175 - 16806 2100 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 16837 - 16896 3.6 + Prom 17480 - 17539 3.7 23 12 Op 1 34/0.000 + CDS 17640 - 18281 787 ## COG0765 ABC-type amino acid transport system, permease component 24 12 Op 2 16/0.000 + CDS 18294 - 18929 390 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 25 12 Op 3 . + CDS 18943 - 19773 938 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain + Term 19782 - 19829 10.5 + Prom 19796 - 19855 7.8 26 13 Op 1 . + CDS 19949 - 20392 468 ## EF0803 hypothetical protein + Prom 20399 - 20458 3.7 27 13 Op 2 . + CDS 20489 - 20713 223 ## EF0802 hypothetical protein + Term 20717 - 20756 3.6 - Term 20696 - 20753 4.1 28 14 Op 1 . - CDS 20768 - 23182 3119 ## COG0495 Leucyl-tRNA synthetase - Prom 23232 - 23291 5.8 - Term 23335 - 23381 4.0 29 14 Op 2 . - CDS 23586 - 24281 633 ## COG1388 FOG: LysM repeat - Prom 24352 - 24411 80.4 30 15 Tu 1 . - CDS 24459 - 25769 1490 ## COG1705 Muramidase (flagellum-specific) - Prom 25832 - 25891 8.4 + Prom 25782 - 25841 6.7 31 16 Op 1 . + CDS 26086 - 26745 644 ## EF0798 hypothetical protein 32 16 Op 2 . + CDS 26745 - 27770 1022 ## EF0797 hypothetical protein + Term 27783 - 27846 10.8 + Prom 27849 - 27908 7.7 33 17 Op 1 1/0.308 + CDS 27938 - 28588 645 ## COG0671 Membrane-associated phospholipid phosphatase 34 17 Op 2 6/0.000 + CDS 28604 - 29572 983 ## COG1242 Predicted Fe-S oxidoreductase 35 17 Op 3 . + CDS 29572 - 30135 597 ## COG0500 SAM-dependent methyltransferases + Term 30136 - 30190 17.0 - Term 30124 - 30178 13.2 36 18 Op 1 36/0.000 - CDS 30193 - 30861 256 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 37 18 Op 2 1/0.308 - CDS 30866 - 31945 1317 ## COG0577 ABC-type antimicrobial peptide transport system, permease component - Prom 31972 - 32031 7.6 - Term 31970 - 32033 15.6 38 19 Tu 1 . - CDS 32083 - 32688 587 ## COG1309 Transcriptional regulator - Prom 32708 - 32767 8.6 - Term 33042 - 33094 8.4 39 20 Op 1 35/0.000 - CDS 33098 - 34867 169 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 40 20 Op 2 . - CDS 34867 - 36582 197 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 - Prom 36629 - 36688 3.4 + Prom 36646 - 36705 8.8 41 21 Op 1 . + CDS 36836 - 37498 649 ## EF0787 TetR family transcriptional regulator 42 21 Op 2 . + CDS 37560 - 37667 164 ## - Term 37492 - 37543 20.1 43 22 Op 1 . - CDS 37631 - 38422 859 ## COG0627 Predicted esterase 44 22 Op 2 4/0.077 - CDS 38461 - 39927 1537 ## COG0477 Permeases of the major facilitator superfamily - Prom 39997 - 40056 10.5 - Term 40025 - 40091 20.4 45 23 Tu 1 . - CDS 40097 - 41281 1771 ## COG0192 S-adenosylmethionine synthetase - Prom 41369 - 41428 8.2 - Term 41445 - 41493 9.1 46 24 Op 1 . - CDS 41497 - 43374 1930 ## COG1835 Predicted acyltransferases - Prom 43394 - 43453 3.9 - Term 43521 - 43573 15.1 47 24 Op 2 . - CDS 43575 - 44906 1448 ## COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog - Prom 44982 - 45041 75.4 + TRNA 44965 - 45036 57.5 # Arg CCG 0 0 - Term 45601 - 45641 7.5 48 25 Tu 1 . - CDS 45650 - 45850 372 ## COG1278 Cold shock proteins - Prom 45966 - 46025 6.7 49 26 Op 1 . - CDS 46084 - 46491 446 ## EF0780 MutT/NUDIX family protein 50 26 Op 2 . - CDS 46517 - 48304 1427 ## COG0584 Glycerophosphoryl diester phosphodiesterase 51 26 Op 3 . - CDS 48376 - 48843 394 ## EF0778 hypothetical protein - Prom 48886 - 48945 7.9 - Term 48952 - 49004 17.0 52 27 Op 1 . - CDS 49017 - 49400 311 ## EF0776 hypothetical protein 53 27 Op 2 . - CDS 49425 - 50453 1108 ## EF0775 anchor protein, putative 54 27 Op 3 . - CDS 50505 - 52322 2106 ## EF0775 anchor protein, putative + Prom 52701 - 52760 6.2 55 28 Tu 1 . + CDS 52787 - 53191 487 ## EF0774 hypothetical protein - Term 53156 - 53206 6.6 56 29 Tu 1 . - CDS 53212 - 53730 561 ## EF0773 hypothetical protein - Prom 53759 - 53818 6.0 + Prom 53837 - 53896 6.7 57 30 Tu 1 . + CDS 53926 - 54519 821 ## COG0740 Protease subunit of ATP-dependent Clp proteases + Term 54523 - 54578 19.1 - Term 54519 - 54557 9.5 58 31 Tu 1 . - CDS 54564 - 55082 631 ## COG1651 Protein-disulfide isomerase - Prom 55114 - 55173 9.6 - Term 55133 - 55186 12.2 59 32 Tu 1 . - CDS 55196 - 56119 1238 ## EF0769 hypothetical protein - Prom 56173 - 56232 3.8 - Term 56283 - 56339 7.6 60 33 Op 1 12/0.000 - CDS 56353 - 57288 1024 ## COG1481 Uncharacterized protein conserved in bacteria 61 33 Op 2 12/0.000 - CDS 57322 - 58317 1113 ## COG0391 Uncharacterized conserved protein 62 33 Op 3 . - CDS 58317 - 59204 1120 ## COG1660 Predicted P-loop-containing kinase - Prom 59228 - 59287 6.1 - Term 59298 - 59335 6.4 63 34 Tu 1 . - CDS 59370 - 60164 845 ## EF0764 hypothetical protein - Prom 60202 - 60261 8.4 - Term 60274 - 60316 8.0 64 35 Op 1 7/0.000 - CDS 60336 - 63155 3094 ## COG0178 Excinuclease ATPase subunit - Prom 63195 - 63254 2.0 - Term 63206 - 63261 17.1 65 35 Op 2 . - CDS 63273 - 65270 2374 ## COG0556 Helicase subunit of the DNA excision repair complex - Prom 65422 - 65481 6.6 + Prom 65466 - 65525 5.3 66 36 Op 1 16/0.000 + CDS 65549 - 67717 2452 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 67 36 Op 2 . + CDS 67719 - 68456 296 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) + Term 68463 - 68503 8.6 - Term 68451 - 68491 8.6 68 37 Tu 1 . - CDS 68504 - 68713 275 ## EF0759 SapB protein, putative - Prom 68778 - 68837 4.0 69 38 Op 1 . - CDS 68867 - 69223 451 ## COG1285 Uncharacterized membrane protein 70 38 Op 2 . - CDS 69259 - 71163 2088 ## COG2217 Cation transport ATPase - Prom 71209 - 71268 6.0 71 39 Op 1 . - CDS 71273 - 72721 1007 ## EF0757 hypothetical protein 72 39 Op 2 . - CDS 72725 - 73174 298 ## EF0756 hypothetical protein - Prom 73216 - 73275 8.9 73 40 Op 1 . - CDS 73376 - 74470 814 ## EF0755 hypothetical protein 74 40 Op 2 . - CDS 74546 - 75286 878 ## EF0754 hypothetical protein - Prom 75384 - 75443 2.5 75 41 Op 1 . - CDS 75450 - 77408 1709 ## EF0753 hypothetical protein 76 41 Op 2 . - CDS 77428 - 78207 979 ## EF0752 hypothetical protein 77 41 Op 3 . - CDS 78224 - 78955 859 ## EF0751 hypothetical protein 78 41 Op 4 . - CDS 78955 - 79293 280 ## EF0750 cell wall surface anchor family protein - Prom 79447 - 79506 8.3 - Term 79443 - 79502 17.1 79 42 Tu 1 . - CDS 79517 - 80467 1304 ## COG1054 Predicted sulfurtransferase - Prom 80497 - 80556 9.3 - Term 80867 - 80902 1.1 80 43 Op 1 . - CDS 80963 - 81544 478 ## COG4420 Predicted membrane protein 81 43 Op 2 . - CDS 81601 - 81672 95 ## - Prom 81698 - 81757 4.6 82 43 Op 3 1/0.308 - CDS 81771 - 82937 969 ## COG1680 Beta-lactamase class C and other penicillin binding proteins - Prom 83030 - 83089 9.7 83 44 Tu 1 . - CDS 83119 - 83499 527 ## COG0346 Lactoylglutathione lyase and related lyases - Prom 83546 - 83605 8.1 84 45 Tu 1 . - CDS 83649 - 85040 1874 ## COG1823 Predicted Na+/dicarboxylate symporter - Prom 85260 - 85319 4.7 + Prom 84724 - 84783 3.9 85 46 Op 1 . + CDS 85024 - 85173 96 ## + Prom 85247 - 85306 7.3 86 46 Op 2 . + CDS 85335 - 85670 478 ## EF0743 hypothetical protein + Term 85674 - 85720 12.1 - Term 85655 - 85712 19.0 87 47 Op 1 . - CDS 85717 - 86103 625 ## COG4835 Uncharacterized protein conserved in bacteria - Prom 86136 - 86195 5.4 88 47 Op 2 . - CDS 86216 - 86647 192 ## EF0741 hypothetical protein - Prom 86706 - 86765 7.0 - Term 86956 - 86989 4.0 89 48 Op 1 . - CDS 86997 - 87641 895 ## COG1428 Deoxynucleoside kinases 90 48 Op 2 . - CDS 87650 - 88348 652 ## COG3201 Nicotinamide mononucleotide transporter - Prom 88447 - 88506 9.5 + Prom 88429 - 88488 8.2 91 49 Tu 1 . + CDS 88596 - 88712 75 ## + Term 88815 - 88868 6.6 - Term 88803 - 88856 14.2 92 50 Tu 1 . - CDS 88903 - 90489 1793 ## COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases - Prom 90511 - 90570 6.5 - Term 90563 - 90621 18.1 93 51 Op 1 1/0.308 - CDS 90686 - 91615 1256 ## COG0549 Carbamate kinase 94 51 Op 2 . - CDS 91627 - 92724 1160 ## COG2957 Peptidylarginine deiminase and related enzymes 95 51 Op 3 3/0.077 - CDS 92717 - 94093 1361 ## COG0531 Amino acid transporters - Term 94107 - 94151 7.6 96 51 Op 4 . - CDS 94160 - 95179 1210 ## COG0078 Ornithine carbamoyltransferase - Prom 95418 - 95477 11.8 + Prom 95367 - 95426 6.6 97 52 Tu 1 . + CDS 95458 - 96423 582 ## COG2771 DNA-binding HTH domain-containing proteins + Term 96431 - 96472 1.1 - Term 96411 - 96465 4.1 98 53 Tu 1 . - CDS 96466 - 96783 403 ## EF0730 hypothetical protein - Prom 96878 - 96937 7.0 - Term 96864 - 96903 8.0 99 54 Op 1 . - CDS 96959 - 97087 219 ## PROTEIN SUPPORTED gi|227517695|ref|ZP_03947744.1| 30S ribosomal protein S9 100 54 Op 2 2/0.154 - CDS 97088 - 98461 1650 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase - Prom 98486 - 98545 5.6 - Term 98592 - 98651 13.9 101 55 Op 1 2/0.154 - CDS 98661 - 99749 1309 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase 102 55 Op 2 21/0.000 - CDS 99768 - 101198 1730 ## COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) 103 55 Op 3 31/0.000 - CDS 101198 - 102667 399 ## PROTEIN SUPPORTED gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 104 55 Op 4 . - CDS 102667 - 102972 438 ## COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit - Prom 103091 - 103150 5.0 - Term 103166 - 103203 -0.6 105 56 Tu 1 . - CDS 103290 - 103400 169 ## - Prom 103493 - 103552 3.5 - Term 103488 - 103543 -0.8 106 57 Tu 1 5/0.077 - CDS 103554 - 105584 2247 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) - Prom 105616 - 105675 7.7 107 58 Tu 1 . - CDS 105710 - 107968 2345 ## COG0210 Superfamily I DNA and RNA helicases - Prom 107996 - 108055 6.3 + Prom 107997 - 108056 7.2 108 59 Tu 1 . + CDS 108133 - 109692 1391 ## COG0038 Chloride channel protein EriC + Term 109694 - 109737 12.6 + Prom 109696 - 109755 8.0 109 60 Op 1 10/0.000 + CDS 109828 - 110580 677 ## COG1349 Transcriptional regulators of sugar metabolism 110 60 Op 2 19/0.000 + CDS 110577 - 111494 959 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 111 60 Op 3 . + CDS 111518 - 113440 2519 ## COG1299 Phosphotransferase system, fructose-specific IIC component 112 61 Tu 1 . - CDS 113477 - 114139 505 ## EF0716 hypothetical protein - Prom 114159 - 114218 5.3 - Term 114167 - 114209 9.2 113 62 Tu 1 . - CDS 114251 - 115534 2053 ## COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) - Prom 115554 - 115613 3.7 114 63 Op 1 . + CDS 115888 - 118173 1757 ## EF0714 hypothetical protein 115 63 Op 2 . + CDS 118228 - 118842 425 ## EF0713 hypothetical protein 116 63 Op 3 . + CDS 118824 - 118967 105 ## EF0713 hypothetical protein + Term 118982 - 119024 9.7 + Prom 118969 - 119028 3.0 117 64 Tu 1 . + CDS 119048 - 120082 1018 ## EF0711 hypothetical protein + Term 120087 - 120122 6.7 - Term 120071 - 120114 11.0 118 65 Op 1 25/0.000 - CDS 120127 - 121854 2201 ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) 119 65 Op 2 . - CDS 121854 - 122120 437 ## COG1925 Phosphotransferase system, HPr-related proteins - Prom 122148 - 122207 5.7 120 66 Tu 1 . - CDS 122291 - 122482 375 ## EF0708 hypothetical protein - Prom 122514 - 122573 7.1 + Prom 122570 - 122629 8.5 121 67 Tu 1 . + CDS 122785 - 125025 1682 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 125033 - 125074 4.2 + Prom 125057 - 125116 11.1 122 68 Tu 1 . + CDS 125220 - 125534 419 ## EF0705 hypothetical protein + Term 125541 - 125580 5.1 - Term 125519 - 125575 7.2 123 69 Tu 1 . - CDS 125577 - 126608 1095 ## EF0704 putative lipoprotein - Prom 126649 - 126708 5.0 124 70 Op 1 . - CDS 126714 - 127361 737 ## COG2323 Predicted membrane protein 125 70 Op 2 . - CDS 127377 - 127820 452 ## EF0702 hypothetical protein - Prom 127851 - 127910 6.1 126 71 Op 1 . - CDS 128304 - 128798 375 ## gi|229546538|ref|ZP_04435263.1| hypothetical protein HMPREF0349_1756 127 71 Op 2 . - CDS 128806 - 130074 651 ## PSM_A2062 adenylate/guanylate cyclase - Prom 130133 - 130192 9.2 - Term 130098 - 130147 11.5 128 72 Op 1 . - CDS 130236 - 130430 137 ## gi|229546536|ref|ZP_04435261.1| hypothetical protein HMPREF0349_1754 129 72 Op 2 . - CDS 130411 - 131415 652 ## LKI_07470 hypothetical protein 130 72 Op 3 . - CDS 131462 - 133210 711 ## COG1479 Uncharacterized conserved protein - Prom 133372 - 133431 7.6 + Prom 134043 - 134102 10.2 131 73 Op 1 . + CDS 134129 - 134425 292 ## gi|229546533|ref|ZP_04435258.1| hypothetical protein HMPREF0349_1751 + Prom 134534 - 134593 7.6 132 73 Op 2 . + CDS 134613 - 135353 134 ## gi|256854436|ref|ZP_05559800.1| predicted protein + Term 135384 - 135438 4.5 - Term 135372 - 135425 8.1 133 74 Op 1 . - CDS 135462 - 136310 471 ## COG0582 Integrase - Prom 136362 - 136421 2.5 134 74 Op 2 . - CDS 136445 - 138019 1858 ## COG4108 Peptide chain release factor RF-3 - Prom 138058 - 138117 6.3 - Term 138138 - 138186 10.2 135 75 Op 1 1/0.308 - CDS 138193 - 139572 1655 ## COG1253 Hemolysins and related proteins containing CBS domains - Prom 139592 - 139651 3.9 136 75 Op 2 . - CDS 139747 - 140892 1304 ## COG0628 Predicted permease - Prom 140926 - 140985 5.0 + Prom 140948 - 141007 6.3 137 76 Tu 1 . + CDS 141037 - 141468 539 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 141492 - 141546 20.1 - Term 141478 - 141532 20.1 138 77 Op 1 . - CDS 141556 - 142089 398 ## COG3557 Uncharacterized domain/protein associated with RNAses G and E - Prom 142217 - 142276 5.0 139 77 Op 2 . - CDS 142278 - 143255 1039 ## COG3684 Tagatose-1,6-bisphosphate aldolase 140 77 Op 3 7/0.000 - CDS 143252 - 143713 625 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 141 77 Op 4 19/0.000 - CDS 143740 - 145158 1812 ## COG1299 Phosphotransferase system, fructose-specific IIC component 142 77 Op 5 . - CDS 145163 - 146089 1051 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) - Prom 146148 - 146207 6.4 + Prom 146155 - 146214 11.7 143 78 Tu 1 . + CDS 146267 - 147013 548 ## COG1737 Transcriptional regulators + Term 147035 - 147082 6.1 - Term 147023 - 147069 12.2 144 79 Op 1 5/0.077 - CDS 147073 - 147717 974 ## COG0220 Predicted S-adenosylmethionine-dependent methyltransferase 145 79 Op 2 1/0.308 - CDS 147790 - 148569 808 ## COG0510 Predicted choline kinase involved in LPS biosynthesis - Prom 148617 - 148676 5.1 146 80 Op 1 7/0.000 - CDS 148698 - 149909 982 ## COG4473 Predicted ABC-type exoprotein transport system, permease component 147 80 Op 2 . - CDS 149911 - 150648 262 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 - Prom 150673 - 150732 5.3 + Prom 150701 - 150760 5.7 148 81 Op 1 . + CDS 150862 - 151287 476 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases 149 81 Op 2 . + CDS 151288 - 151632 339 ## EF0686 hypothetical protein Predicted protein(s) >gi|307679256|gb|GL456471.1| GENE 1 1 - 88 118 29 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTISYEKFHLKEVINASGKMTILGVSKVS >gi|307679256|gb|GL456471.1| GENE 2 78 - 1187 1366 369 aa, chain - ## HITS:1 COG:STM4445 KEGG:ns NR:ns ## COG: STM4445 COG3964 # Protein_GI_number: 16767691 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Salmonella typhimurium LT2 # 3 367 2 364 377 340 45.0 3e-93 MDYDLLIKNGQTVDGMPVEIAIKEKKIAAVAATISGSAKETIHLEPGTYVSAGWIDDHVH CFEKMALYYDYPDEIGVKKGVTTVIDAGTTGAENIHEFYDLAQQAKTNVFGLVNISKWGI VAQDELADLSKVQASLVKKAIQELPDFVVGIKARMSRTVIGDNGITPLELAKQIQQENQE IPLMVHIGSAPPHLDEILALMEKGDVLTHCFNGKENGILDQATDKIKDFAWQAYNKGVVF DIGHGTDSFNFHVAETALREGMKAASISTDIYIRNRENGPVYDLATTMEKLRVVGYDWPE IIEKVTKAPAENFHLTQKGTLEIGKDADLTIFTIQAEEKTLTDSNGLTRVAKEQIRPIKT IIGGQIYDN >gi|307679256|gb|GL456471.1| GENE 3 1196 - 2284 1197 362 aa, chain - ## HITS:1 COG:L176316 KEGG:ns NR:ns ## COG: L176316 COG3589 # Protein_GI_number: 15672155 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 5 361 4 361 364 330 46.0 2e-90 MKRALGVSVYPDHSDINQDKAYLKKASECGFTRIFMSMLEVTDGKEAVQKKFKELISYAK NLGFETILDVVPSIFDELEISYDDLTFFSELGADGIRLDTGFDGNKEAMLTFNPFGVAIE LNMSNDVAYLDNILTYEANRPFLYGCHNFYPQAGTALPYDFFEKCSIRFKKEGIRTAAFI SSQVGEIGPWDVNDGLPTLEMHRQLPVTVQAKHLFATNLIDDVVIGNAYASNEELEALGQ LNRYQTELTIVFEEATSEIEKEIVTKNQHFRRGDITQQMIRSTEVRKKYKNEANPPHDNQ AMLQPGDVVVGNDAFGKYKNELQVVLEPHQDSRKNRVGRIIEEELVLLEFIKPWTKFRFI EK >gi|307679256|gb|GL456471.1| GENE 4 2293 - 2541 148 82 aa, chain - ## HITS:1 COG:no KEGG:EF0835 NR:ns ## KEGG: EF0835 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 11 82 11 82 82 114 98.0 2e-24 MIIWFIFFFIVSQIIIEKGQLPTVVYQLGLVKTLVFTAVCITLSMIIGGFLNQPVLLVGS TTILCSSVIAWKFRNKFENSGV >gi|307679256|gb|GL456471.1| GENE 5 2618 - 3931 1439 437 aa, chain - ## HITS:1 COG:BS_ywbA KEGG:ns NR:ns ## COG: BS_ywbA COG1455 # Protein_GI_number: 16080890 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Bacillus subtilis # 1 437 1 442 444 293 42.0 5e-79 MNGFVQWMEVKLMPIANKFGSQRHMTAIRKGLIATMPLTIVGSFFTIFQNIPIEAYTKLI EPYQAILDIPSRYTMGLLALYATFGIASSLAKSYKLDSLTCGILALMAFLVTAAPPTRVF EDVDNVITAGRYINLANLGSASLFGAIVTALLSVEIYRFFIEKDIMIKMPDGVPPEVSNS FIALIPGAVILLLFWVIRHVIGFDLNGFLSTLLMPLKGILAGNSLFGGLLTVFLICFFWV LGIHGPAIMGPVIRPFWDMSIAENLEAFTNGANVHQLPNIFTEQFLQWFIWIGGAGTTLS LVVLMMFSKSTYLKSLGRLSFLPGLFNINEPVIFGTPIVMNPILGIPFIVAPLITTTLSY FLTVANIIPMMAARLAFAIPAPIAAWMSTNWSFSAAVLVIVNFLITMAIYYPFFKVYEKQ QLDKEAEELVAEQAAKN >gi|307679256|gb|GL456471.1| GENE 6 4062 - 4757 1064 231 aa, chain - ## HITS:1 COG:no KEGG:EF0833 NR:ns ## KEGG: EF0833 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 231 1 231 231 317 99.0 3e-85 MEQQEKNEWAQQEQEIQEGLKGKSFWYADWGFPILVGIMSAAIFAGTHMYVVYGVGAFNE VSIVAMLKAGLDGGSYGAAATFGASFLFARILEGSLVGILDLGGSILTGIGIGVPAIFLS MGIKAPVENFGLALLTGAILGLAVGGVIVLIRKFTINQGNSTFGADVMMGAGNASGRFLG PLIILSAAGASIPIGIGATLGALGFYIWKKPIAGGAILGAMIFGAIFPVSL >gi|307679256|gb|GL456471.1| GENE 7 4777 - 5556 944 259 aa, chain - ## HITS:1 COG:no KEGG:EF0832 NR:ns ## KEGG: EF0832 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 259 1 259 259 436 99.0 1e-121 MEFVIILLKSLLIGGLLGFAAGAGAARMFHAPQTQGLGAFRTLGEMNAAQGDPASHFSFG LGFFFNAWASAVGAGAFTQDVTHRIVPNWAAAILLVKDKDVTKTMHNPKKMGIVGAFVGM ATVAFLNSTAAAIPESLQVTAVAVLVPAATILINTVMPVLFWLAALDAGKRTGFWGTLFG GLSQLVMGNAVPGVVLGILIGKGVDDLGWTRMTRGMLGAIILLFILSGFFRGFDLEMIES FRLSIPQWLNNLHNVFTVK >gi|307679256|gb|GL456471.1| GENE 8 5572 - 5928 471 118 aa, chain - ## HITS:1 COG:no KEGG:EF0831 NR:ns ## KEGG: EF0831 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 118 1 118 118 184 100.0 8e-46 MDATKRSTQTVIVSGKGNKKNEAFASALNDVSKKVLKETTEVLIRIEPKEVTIRQAKEQV YTEKFLFFFFPRKRVIYHVELAVEVEIQAIAVEEVDFLTETIKEPNAVVVPFLSKRGV >gi|307679256|gb|GL456471.1| GENE 9 5959 - 6315 593 118 aa, chain - ## HITS:1 COG:no KEGG:EF0830 NR:ns ## KEGG: EF0830 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 118 1 118 118 194 100.0 7e-49 MITVVIADRLGKGQNVAKGVEQAGGRAVVVPGMGADMRLGDVMQQEKADLGISFCGSGGA GALTAATKYGYPERHGMRSIEEGVTAINDGKTVLGFGFMDQEELGKRVTEAFIKKHGA >gi|307679256|gb|GL456471.1| GENE 10 6330 - 6653 527 107 aa, chain - ## HITS:1 COG:no KEGG:EF0829 NR:ns ## KEGG: EF0829 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 107 5 111 111 158 98.0 6e-38 MEAQEIIRQSAEPEKLQSIIKQTSARLAEAQIEPTELQWTILINHLNEMLNRSREGTTLA GVDRTLFTELTPETLQIAQETTEAIGQLSEDEWYVLAVHFEVAKQNN >gi|307679256|gb|GL456471.1| GENE 11 6619 - 8538 1647 639 aa, chain - ## HITS:1 COG:BS_licR_1 KEGG:ns NR:ns ## COG: BS_licR_1 COG3711 # Protein_GI_number: 16080911 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus subtilis # 4 493 1 486 499 142 25.0 2e-33 MTVLLSKRAINILLMLLDLEGSITTQELAENFTVSVRTIKYDLEDIRAWFEQHDETLYSK RNKGIWLDLPDSKRLLLKNEIIDVDRFETYPDQKRRVNVLIFQLLSVKGYLTAQQLADEL LVSRNTIVSDLEQVERLLQAYDLTLIRQARQGFTISGEESNVRLLMEFITQKELTEYDIY QIMNYVTKTKGAEKIPKIKFGSGTLFQGCYRSALKKMRNLINPLDQNQFDYAEILSITLR VAIAAARMQMAHTIGTYRVLSQKTRFEQRNEVPLLLLQEVFERYDLPLLADEYFYIYSDL FGTHQRQDMVQLTKQVIESVSKELNYPFVNDRQLFTNLFAHQSLRFTKKHLFINEYNPFS EEIKGKHPALFLAIQSACKQLIQRSVLLVNDSFCAYIALHFLAAQERQQQEAKVVRIVYV CSTGLGVTSLIEQKILEEVPNVELAGFASVLNATEVIQAEKPDLVLSIFPIEEMTYPFIK VSPLLTDTDLSLIREEVDKILLGKRQGKGTARSTKSDVIEKNERIQSQDLLVKAYIIYEE LKRMFQTKLLSEYQEAFLLHVLLMTHRITFNKQYEEIPCNREVSHERQEEIRQIECLFAK NELPVNHAEISALLNYLEQPKEEEDGTSNGSTGDHSTKC >gi|307679256|gb|GL456471.1| GENE 12 8909 - 9874 1215 321 aa, chain - ## HITS:1 COG:L194226 KEGG:ns NR:ns ## COG: L194226 COG0673 # Protein_GI_number: 15673536 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Lactococcus lactis # 4 321 2 319 324 246 42.0 4e-65 MDKIRYGIMSTAQIVPRFVAGLRESAQVEVRGIASRRLENAQKMAKELAIPVAYGSYEEL CKDETIDIIYIPTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLM EAQKSVFLPITQKVKATIQEGGLGEILWVQSVTAYPNVDHIPWFYSREAGGGALHGSGSY PLQYLQYVLGKEIQVITGTATYQQGATDSQCNLALKFAEGTLGNIFINVGLKIPSEMTIY GTKGQIVIPNFWKTDCAYYTDAQGNTVKWSEQFTSEFTYEINHVNQCLQDKKLTSPVMTK ELTIATVKIVESFYQEWFDNE >gi|307679256|gb|GL456471.1| GENE 13 9976 - 10317 396 113 aa, chain - ## HITS:1 COG:lin0887 KEGG:ns NR:ns ## COG: lin0887 COG2337 # Protein_GI_number: 16799960 # Func_class: T Signal transduction mechanisms # Function: Growth inhibitor # Organism: Listeria innocua # 1 112 2 112 115 119 58.0 2e-27 MIKRGEVFYANLSPVVGSEQGGIRPVLIIQNNKGNLFSPTLIVAPITRNVSKRLQPTQVL IEILHNECRTPSLILLEQIRTLDKERMLHKVCQLSREEMEQVNQALKVSVGIR >gi|307679256|gb|GL456471.1| GENE 14 10486 - 11115 779 209 aa, chain - ## HITS:1 COG:BH1275 KEGG:ns NR:ns ## COG: BH1275 COG0572 # Protein_GI_number: 15613838 # Func_class: F Nucleotide transport and metabolism # Function: Uridine kinase # Organism: Bacillus halodurans # 5 206 4 205 211 278 70.0 6e-75 MKDSQPIIIGVTGGSGSGKTSVSRAIFNNFPDHSIMMLEQDSYYKDQSHLSFEERLNTNY DHPFAFDTDLLIQHVEQLLNYQAIEKPVYDYVAHTRSTETVIQEPKEVIILEGILILEDR RLRDLMDIKVYVDTDDDIRIIRRIKRDMEERGRTLDSVIEQYLTVVKPMYHQFIEPTKRY ADIIVPEGGENHVAIDLINTKVDSILTKM >gi|307679256|gb|GL456471.1| GENE 15 11112 - 11207 89 31 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKSLGKGLAFFRVFIIIVKDNEVFEKKEVYT >gi|307679256|gb|GL456471.1| GENE 16 11290 - 11745 496 151 aa, chain + ## HITS:1 COG:BS_yvbK KEGG:ns NR:ns ## COG: BS_yvbK COG0454 # Protein_GI_number: 16080442 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 15 150 19 155 155 135 52.0 2e-32 MIKKVKKEALTTAHYALLYEADPSKKMVEDYITRGICFDYQTEELQGILVLLPTHPRTLE IVNIAVSEESRGRGIGQELLHFAIDFAKKEKYDYLEIGTGSTGFQQLYLYQKVGFRMTHI EPDFFIHHYDEPIMENGLPLKDMVRLRLHLS >gi|307679256|gb|GL456471.1| GENE 17 11781 - 12461 788 226 aa, chain - ## HITS:1 COG:BS_yfnB KEGG:ns NR:ns ## COG: BS_yfnB COG1011 # Protein_GI_number: 16077800 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Bacillus subtilis # 2 224 5 227 235 247 54.0 1e-65 MKTLLFDVDDTLLDFKLAEKKALHALFEEENVPFTSEVESTYHRINQGLWRSFEEGKITK DVLLDTRFGLLFDAFNREVDSVKMGENYREYLSQGHDLLGNSQRILEKLAPHYDLYIVTN GVAKTQYRRLEDSKLMPYFKDIFVSEEVGYQKPMKEYFDFVFERIPNFSREKTMIIGDSL HSDIQGGQQAKIQTVWLNPTSAPATPTIQPNYTIQQLDELLPILGH >gi|307679256|gb|GL456471.1| GENE 18 12458 - 13240 680 260 aa, chain - ## HITS:1 COG:SPy1398 KEGG:ns NR:ns ## COG: SPy1398 COG1187 # Protein_GI_number: 15675319 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Streptococcus pyogenes M1 GAS # 1 194 1 194 194 199 53.0 6e-51 MRLDKLLEELQFGSRKTVKRLIRGKQVTVDGIVTLNESQNVDAQLQMIKVKGQLISHKTH VYYMLNKPKGVVSAVSDASKKTVIDLIAPQDRRPGLYPVGRLDGDTEGLLLLTDNGQLGY QLIRPNKEVAKCYEVKVNGLVSAEDCAKFKDGIVLQGGIQCKPAKITVLAATETESHVFL TIQEGKFHQVKKMFLSVGKKVTALKRQTMGPLRLDPQLPLGAYRSLTREELQLLLPYFFI EKQQTSKALPSNLKREEERK >gi|307679256|gb|GL456471.1| GENE 19 13571 - 14179 1003 202 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229546665|ref|ZP_04435390.1| 50S ribosomal protein L25/general stress protein Ctc [Enterococcus faecalis TX1332] # 1 202 1 202 202 390 100 1e-107 MSVQLEVKERAIRPRSLRNQLRHEGKVPAIVYGYQIESTPIYFEEKDLSKILREHGANTV IKMTVDGKNINTLMSKAQLDTFTGQMLHVEFLSVNMKETTEVEAEVQLIGESAGVKAGGT LAQNLYTVLVAATPDKLPESIEVDITNLEIGDALTIADLPEHKDYEILTDPEEQLVAIVE AQTAPEEEEGTAAETIEPELAE >gi|307679256|gb|GL456471.1| GENE 20 14431 - 14754 429 107 aa, chain + ## HITS:1 COG:no KEGG:EF0819 NR:ns ## KEGG: EF0819 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 107 1 107 107 201 100.0 7e-51 MFERFDSDRSRYASLGVVSSLPSGLIDSIWLIIDLNLKGVIPLNDLLHFDLLNNNGKVTV HFSQENSSVEMAIDLPFSYSTAYPSRIFAFDDGHRETILLPAEMLES >gi|307679256|gb|GL456471.1| GENE 21 14820 - 15068 386 82 aa, chain - ## HITS:1 COG:SA0360 KEGG:ns NR:ns ## COG: SA0360 COG2261 # Protein_GI_number: 15926075 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 78 1 78 83 57 56.0 7e-09 MFSFLWALIVGGIIGAIAGAILGKDVPGGIIGNIIVGFLGSWVASLLLPSLGPVIGGFPI ISALLGAIICIAIYSFIVNRKA >gi|307679256|gb|GL456471.1| GENE 22 15175 - 16806 2100 543 aa, chain - ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 1 542 1 549 549 391 39.0 1e-108 MKQKKWLIGLVALGLVLAACGSGGSKTTSNEASTQKINVASGGELSTLDSAHYTDVYSSD MIGQVVEGLYRQDKNGDPELAMAKAEPQVSEDGLVYTFKLREAKWTNGDPVKAGDFVVAF RNVVDPAYGSSSSNQMDIFKNGRAVREGQATMEEFGVKAIDDQTLELTLENPIPYLAQVL VGTPFMPKNEAFAKEKGTAYGTSADNFVGNGPFVISGWDGNSETWKLKKNDHYWDKEHVK LNEIDVQVVKEIGTGANLFDNGDLDYTVLADTYALQYKESKQAHFVPKAMVGYLSPNHRR EITGNEHVRKAFLQAIDKETFAKEILGDGSTALNGFVPANFAKNPDTGEDFRKENGDLLP YNIKEAQANWTKAKEELGKDKIELELISADSAIAKKTIEFVQGQLQQNLPGLTIKLKSLP LQNRLDLQTAGNYDLAFGTWTPDYADPINFLEFYDSKSGLNTSGYNDSAYDAGLQKVRKD YANEPEKRWNELLSLEKTLIEKDAGVLPLFQGAIGYLKSDRLQGLQVFSFGRTVSYRLAY VEE >gi|307679256|gb|GL456471.1| GENE 23 17640 - 18281 787 213 aa, chain + ## HITS:1 COG:lin1851 KEGG:ns NR:ns ## COG: lin1851 COG0765 # Protein_GI_number: 16800918 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Listeria innocua # 1 213 1 213 213 236 67.0 3e-62 MDYILEILPALVSGAGMTLKVFFFTLLGSIPLGIIIAFILQSSFKPLRYLINLYIWLMRG TPLLLQLIFVFYGLPLIGIVFERYDAALFAFILNYAAYFAEIFHGGIQAIPQGQYEAAKV LRLTRFQTVTRIILPQVVKIVLPSVGNEIINLVKDTSLIYVLGLGDLLRAGKIAMSRDVT LVPLALVGVIYLLFTAILTVASKKIEKFYQYYK >gi|307679256|gb|GL456471.1| GENE 24 18294 - 18929 390 211 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 208 1 213 245 154 38 2e-36 MLTIKNLTKHFDNRTIIDHLNLEIPEGKILTIVGPSGGGKTTLLRCLAGLETIDSGELLL DGVPFNPAEMDNADQVVGVVFQDFQLFPHLSVLENITLAPTLVLKEEKAKSQQEALELLE KLGLAGKEKLYPYQLSGGQKQRVALARALAMKPKVLGYDEPTSALDPALRQQVEEVILDL RKQGMTQIVVTHDMAFAEKIADNLLTVAPVQ >gi|307679256|gb|GL456471.1| GENE 25 18943 - 19773 938 276 aa, chain + ## HITS:1 COG:lin1849 KEGG:ns NR:ns ## COG: lin1849 COG0834 # Protein_GI_number: 16800916 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Listeria innocua # 4 268 2 266 271 288 54.0 1e-77 MKKKYSLALLVICCSLLLFAGCGKRKSNEDQWTRINEEKRIIIGLDDSFVPMGFQDKSGK IVGFDVDLAKAVFKLYGISVDFQPIDWSMKETELQNQTIDLIWNGYTKTSERAEKVQFTQ PYMTNDQVLVSLKEKNIATASDMQGKILGVQNGSSGYDGFESQPDILKKFVKDQTPILYD GFNEAFLDLKSGRIDGLLIDRVYANYYLSHEDNLKNYTISHVGYDNEDFAVGVRKSDNQL VQKINTAFETLRKDGTLSKISQKWFGEDVTNNTKIN >gi|307679256|gb|GL456471.1| GENE 26 19949 - 20392 468 147 aa, chain + ## HITS:1 COG:no KEGG:EF0803 NR:ns ## KEGG: EF0803 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 147 1 147 147 222 99.0 5e-57 MPTNKKEGMLFTTLMCFLMVFGMSTYNLLLHGEFSLYALSKGLLPGFIVAFILDVFIVGV LAKKIAFSLPFNKEKRLLLILTISSLMIIGMVTCMSLFGLLMEGQTLSLSAYFQAWGLNF IVALPYQLLIVGPFSRMILTNYQQRQT >gi|307679256|gb|GL456471.1| GENE 27 20489 - 20713 223 74 aa, chain + ## HITS:1 COG:no KEGG:EF0802 NR:ns ## KEGG: EF0802 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 74 23 96 96 105 98.0 4e-22 MKKYRISLFLGLISLLLFMISILVGSTLSSDGLLKEPAFFCTPLGYFFLFIALLSVITIT CKEHMNQKGKTKQP >gi|307679256|gb|GL456471.1| GENE 28 20768 - 23182 3119 804 aa, chain - ## HITS:1 COG:lin1769 KEGG:ns NR:ns ## COG: lin1769 COG0495 # Protein_GI_number: 16800837 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Leucyl-tRNA synthetase # Organism: Listeria innocua # 1 804 1 803 803 1270 75.0 0 MSYNHKEIEKKWQKYWAKNNCFNTLDDPNKEKFYALDMFPYPSGQGLHVGHPEGYTATDI LSRMKRAQGYNVLHPMGWDAFGLPAEQYALDTGNDPAEFTKKNIETFRRQINSLGFSYDW NREINTTDPEYYKWTQWIFTKLYEKGLAYEAEVAVNWVPELGTVISNEEVIDGKSERGGY DVVRRPMRQWMLKITAYADRLLEDLELVDWPESIKDMQRNWIGRSEGANVTFKVAGTEES FTVFTTRPDTLFGATYTVLAPELELVKKITTPEQTAAVEAYIEETSKKSDLNRTDLAKEK TGVFTGAYAINPVNGQEIPIWIGDYVLASYGTGAIMAVPAHDERDYEFAKTFGIDILPVI AGGDITTEAYTGDGPHINSDFLNGLNKAEAIAKMNEWLEENHVGKKEVSYRLRDWLFSRQ RYWGEPIPVIHWEDGTTTTVPESELPLRLPVTSDIRPSGTGESPLANIDEWVNVVDPETG MKGKRETNTMPQWAGSSWYYLRFIDPHNKNEIADFEKLKRWLPVDIYIGGAEHAVLHLLY ARFWHKFLYDIGVVPTKEPFQKLYNQGMILGENNEKMSKSRGNVVNPDDVVAKYGADTLR LYEMFMGPLDASIAWNENGLEGSRKFLDRVWRLIVDEEGKMRDRITTINDGRLTKVYHQT VKKVTEDMANLHFNTAISQLMVFVNEANKVDALPYEYVEGFVQLLAPIAPHIGEELWQIL GNEESLTYVPWPTYDEAALVEDEVEVVFQVNGKLRGKQNVARGLIKEELEQIAMNHEAVK EFIEGKTVRKVIAVPDKLVNIVAN >gi|307679256|gb|GL456471.1| GENE 29 23586 - 24281 633 231 aa, chain - ## HITS:1 COG:lin2838_2 KEGG:ns NR:ns ## COG: lin2838_2 COG1388 # Protein_GI_number: 16801898 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: FOG: LysM repeat # Organism: Listeria innocua # 3 230 8 253 254 125 37.0 7e-29 MNKIAAQYGVSVANLRSWNGISGDLIFAGQKIIVKKGTSGNTGGSSNGGSNNNQSGTNTY YTIKSGDTLNKISAQFGVSVANLQAWNNISGSLIFAGQKIIVKKGANSGSTNTNKPTNNG GGATTSYTIKSGDTLNKISAQFGVSVANLRSWNGIKGDLIFAGQTIIVKKGASAGGNASS TNSASGKRHTVKSGDSLWGLSMQYGISIQKIKQLNGLSGDTIYIGQTLKVG >gi|307679256|gb|GL456471.1| GENE 30 24459 - 25769 1490 436 aa, chain - ## HITS:1 COG:L68758_1 KEGG:ns NR:ns ## COG: L68758_1 COG1705 # Protein_GI_number: 15672254 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Lactococcus lactis # 175 344 57 225 242 165 57.0 1e-40 MKKESMSRIERRKAQQRKKTPVQWKKSTTLFSSALIVSSVGTPVALLPVTAEATEEQPTN AEVAQAPTTETGLVETPTTETTPGTTEQPTTDSSTTTESTTESSKETPTTPSTEQPTVDS TTPVESGTTDSSVAEIAPVAPSTTESEAAPAVTPDDEVKVPEARVASAQTFSALSPTQSP SEFIAELARCAQPIAQANDLYASVMMAQAIVESGWGASTLSKAPNYNLFGIKGSYNGQSV YMDTWEYLNGKWLVKKEPFRKYPSYMESFQDNAHVLKTTSFQAGVYYYAGAWKSNTSSYR DATAWLTGRYATDPSYNAKLNNVITAYNLTQYDTPSSGGNTGGGTVNPGTGGSNNQSGTN TYYTVKSGDTLNKIAAQYGVSVANLRSWNGISGDLIFVGQKLIVKKGASGNTGGSGSGGS NNNQSGTNTYYTVIAS >gi|307679256|gb|GL456471.1| GENE 31 26086 - 26745 644 219 aa, chain + ## HITS:1 COG:no KEGG:EF0798 NR:ns ## KEGG: EF0798 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 219 1 219 219 433 100.0 1e-120 MNKEHFIIELKIYLKALNPKDQAIILAKYKALFDARVAEGETEEQVAKSLGKPRVIAEEI LKEQGIELTERKIENNGWQEIPAATPAYDHPYEEESEFYYDNDSPYYQRPQHRPLTRFFQ VLGIFCLNFFFMFWVILGIALMYVGCGIAGAATLFSPIYGIYSVITQANAASFFQLSMSL FLFGASIIGWLLFLPILKFSAHVFKRYFQWNIAVLRGDI >gi|307679256|gb|GL456471.1| GENE 32 26745 - 27770 1022 341 aa, chain + ## HITS:1 COG:no KEGG:EF0797 NR:ns ## KEGG: EF0797 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 341 1 341 341 582 98.0 1e-165 MKKTTGILLSIAVLAMLIGGSGAVYYYKQAEKSVTPLKESYTLKNKQAGEELHLSLKGKG PYTIYKTDSNKMGLRSPNNAFYSKAEGTLNVKEEKNKITATINTTRTQNQPELSFFNIGI FSDFTPNVSVQIPNNVKKLVIDGSTHSQVSLNAFNVDELTTNLPNSYVSLSGVKAKKMTL NSSDGIYLSADTSAKKATVETTDGDITLDSAYFDEIKNTTISGDIRVQNARGNIQATTTD GDISVYDFKGEANFSSENGDFSLDMPAVPKKLTVALVHGDIYVNSGEILRNISIKGESKL GDVQLLNKERTSYKNGRADTEFNLSSEFGDITVDTPDDDNQ >gi|307679256|gb|GL456471.1| GENE 33 27938 - 28588 645 216 aa, chain + ## HITS:1 COG:SP0489 KEGG:ns NR:ns ## COG: SP0489 COG0671 # Protein_GI_number: 15900403 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 216 1 216 216 132 38.0 6e-31 MKNKLYYQFAGSCFLLVFMFLGYVVRFYPTWLKGFDQTITSFVRRPFPQLNNFFIWYTKF ANSLTIIILAIVVIALFIVWKYYAEALWLFINTALIAGVGNSLLKLFFMRQRPTLEHLVT EHTYSFPSGHAVGSTLFYGTILLILPIFIKNKTVRLCVQILLGIGIFMIGVSRIYLGVHF PSDILGGFCLGLAWLLLSYPIYLEKRFVWRFQSKQR >gi|307679256|gb|GL456471.1| GENE 34 28604 - 29572 983 322 aa, chain + ## HITS:1 COG:L142355 KEGG:ns NR:ns ## COG: L142355 COG1242 # Protein_GI_number: 15674248 # Func_class: R General function prediction only # Function: Predicted Fe-S oxidoreductase # Organism: Lactococcus lactis # 12 310 3 301 313 488 74.0 1e-138 MQIFPYSDDPNKRYHTWNYALRQQFGEKIFKVPIDGGFDCPNRDGTVAKGGCTFCSVSGS GDMIVAPSDPLPLQFQKEIQLMHQKWPTVDQYIVYFQNFTNTHAPVDVIRHRFEQVVNEK GVVGLSIGTRPDCLPDEVVNYLAELNERFYLWVELGLQTTFEETSAAINRAHDYQTYLDG VAKLRKHGIRVCTHLINGLPGETPAMMRENVRRTIQDSDIQGIKLHLLHLMTNTKMMRDY NEGRLQLMSKEAYVSVICDQLEMIPPEIVIHRLTGDAPFETIIGPMWSLKKWEVLNAIDA EMKRRNSYQGKYTVISGKEVFN >gi|307679256|gb|GL456471.1| GENE 35 29572 - 30135 597 187 aa, chain + ## HITS:1 COG:BH3285 KEGG:ns NR:ns ## COG: BH3285 COG0500 # Protein_GI_number: 15615847 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Bacillus halodurans # 6 187 7 190 190 159 45.0 4e-39 MLQTALHFSHQLLKEVVEPGDFVIDATMGNGHDTAFLAELVGPSGEVFAFDIQKEALINT EQKLTELNLLPQTTLFPLGHEHLHAVLDEETEITAAIFNLGYLPKSNKEIITKPATTKQA LDGLLPHLVKGSRIILVVYYGHEGGSEELDLVTNYTQSLPQDVYSVLRYEFINQKNQPPV LFCIEKK >gi|307679256|gb|GL456471.1| GENE 36 30193 - 30861 256 222 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 201 1 199 223 103 34 6e-21 MANVLEMKNIYKKYGEKHTEVIALKELSFAVQPGEFVAVIGPSGSGKSTFLTIAAGLQAP TSGEVIVGGQSLNKLTKKQRLAQRFQKIGFILQSSNLVPFLTVEDQFHLIEKVDKSRKNS ELKEQLLETLGLKELRNSYPRDLSGGERQRVAIACALYHEPDVILADEPTASLDTEKAFD VVQLLAKEAKEKDKGIIMVTHDERLLKYCDRVVRIRDGELTE >gi|307679256|gb|GL456471.1| GENE 37 30866 - 31945 1317 359 aa, chain - ## HITS:1 COG:L130944 KEGG:ns NR:ns ## COG: L130944 COG0577 # Protein_GI_number: 15674237 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 1 358 2 357 357 285 47.0 8e-77 MFLGFNEMKYSKGRYVLVVLVMVLIAWLIFILSGLANGLAQGNRLAVDQWQANQVVLSKE ANSNLNVSVLDENVKETISGGKIAPIGQQSLAIRPADDKKAELTNVSLFGIEKESFLMPK VIEGNAFTDKNQVIASETLKNQGFKIGDKLTAGKYDEQLEIVGFISKSSYNIVPVIYTSL DTWRSIKYGDNPAMAKMVNGFIVRSKDNAEVKTTNKDSQVLSISDFIEKLPGYSAQNLTL DGMIYFLIVIAAFIIGIFIFVMTLQKTAMFGVLKVQGVPTSFLAKAVMLQTALLAVLGVA IGLALTGITVLFLPEAMPYATNGPRMILFSVLLILSALIGGAFSIRTIAKIDPLIAIGG >gi|307679256|gb|GL456471.1| GENE 38 32083 - 32688 587 201 aa, chain - ## HITS:1 COG:lin2558 KEGG:ns NR:ns ## COG: lin2558 COG1309 # Protein_GI_number: 16801620 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 1 198 1 199 202 147 39.0 2e-35 MEKPNKRKADLERTRQIILSVASELFMTKGFKNTSTREIALKANITQPNLYHHFKNKKEL YLAVIEELTSRVQEELVPIISGNASVEEKLYQLIKVLLDEHPTNLFLMLNDMFQEMGPDY NRTLYQIFKKTYINNIAAIFESEPETNCLQEGISVDDATRFILYNVSALLSIEKTYQRKT VDDDVKKFIQFMLHGVLKSHK >gi|307679256|gb|GL456471.1| GENE 39 33098 - 34867 169 589 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 366 589 21 235 305 69 25 7e-11 MTDLIKASKFFYHYLKRYKVSFLFIFLAIFAATYLQVKAPQFVGEAIQELAKYAVNVMQG KDDKSAFVSVIWKLLIFYVLTSAASFIYSILFTQVVGKSTNRMRIGLFNKLEKLTIRFFD SHQDGEILSRFTSDLDNIQNSLNQALLQVLTNIALLVGVLIMMFRQNVELAWATIASTPI AILIAVFVISKARKYVDLQQDEVGKLNGYMDEKISGQRVIITNGLQEETIDGFLEQNEKV RAATYKGQVYSGLLFPMMQGMSLVNTAIVIFFGGWLAINGSVDRAAALGLVVMFVQYSQQ YYQPLMQISSGYSMIQLAVTGARRLNEMFDEPDEIRPENGEKLEEINKAVALNHVVFGYN PETPVLKDVSIHVDKGEMVALVGPTGSGKTTIMNLMNRFYDVNEGAVTFDGVDIREMDLD SLRSHVGIVLQESVLFSGTIRENIAFGKPEATDEEIVQAAKQANIHEFIVNLEQGYDTEI TEENNLFSTGQKQLVSIARTIITNPELLILDEATSNVDTVTEAKIQKAMDEAIKGRTSFV IAHRLKTILNADRIIVLRDGEVIEEGNHHELVEQDGFYAELYKNQFVFE >gi|307679256|gb|GL456471.1| GENE 40 34867 - 36582 197 571 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 346 551 21 223 305 80 28 4e-14 MDLIIQHAKKYKGSVVIALLAVIVMVVSALWQPKLLQQVLEAIMNDDSDKMKNLGIQLIA IAGLGLVAGVINTIFSAKVAQGVSADIREATFRKIQTFSFGNIEKFSAGNLVVRLTNDVT QIQNVIMIALQTLFRIPFLFIGSFILAMLTLPQLWWVIVALVIAVILISMLSFSQMGKHF MIIQNLIDKINGIAKENLLGIRVVKSFVQEKNQLSRFTKVSEELTTYNLIVGSLFAVMIP AFMLVANLAVVGSIFFVSNLVKDDPTLIGGVASFMNYLMQIMMAIIIGGMMMMMTSRAAV SIKRIKEVMETEPDVTYKKVPEQELIGSVEFDHVSFRYPGDEEDTLKDISFSIQPGEMIG IVGATGAGKSTLAQLIPRLFDPTEGKIEVGGVDLREVNEHSLRKTVSFVLQKAILFSGTI AQNLRHGKRDASEADMERASGIAQAKEFIEKLAEGYDAPVEERSNNFSGGQKQRLSITRG VIGEPKILILDDSTSALDARSERLVREALDKELKETTTIVIAQKISSVVHADRILVLDNG RLVGEGTHEELAATNPVYQEIYETQKGKEEA >gi|307679256|gb|GL456471.1| GENE 41 36836 - 37498 649 220 aa, chain + ## HITS:1 COG:no KEGG:EF0787 NR:ns ## KEGG: EF0787 # Name: not_defined # Def: TetR family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 220 1 220 220 404 99.0 1e-111 MEPKLSKDTIIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAIYWYFKNKQALLQSMAEA IEEHFQEPALCGEWYSDLLAFMENYYDLYQQFPCAIAIEIQTVPAYPQRLRHLNQMMGIL REAGFSPEMTHLAVTSLQHLLFGMIMDATEEKQLVSQVLNGDDYLKEQVLHMKQYVSDNE LTYMEESIQFRHSIHQKSAFIQAVKTYLDGLQADNTSSSK >gi|307679256|gb|GL456471.1| GENE 42 37560 - 37667 164 35 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSSRLDPSQQKGLTFKINIENYFLYFGIGSQAKAF >gi|307679256|gb|GL456471.1| GENE 43 37631 - 38422 859 263 aa, chain - ## HITS:1 COG:L12887 KEGG:ns NR:ns ## COG: L12887 COG0627 # Protein_GI_number: 15673753 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Lactococcus lactis # 1 261 1 249 258 202 43.0 4e-52 MAFLQANIYSNVLEMEMNVNVILPQETVKKVGTSTQAALTDIPVLYLLHGMGGNHSVWAR RTSIERYVADLGIAVIMPSTYLAWYTDTQYDMNYWTFISEELPKICHQLFPQLSTKREKT FAAGLSMGGYGALKLGLAKPESFAAVASLSGAVSLSSTSFGELLKVRKRSYWEGIFGPLD QIEGSIHDPLYLLQQLVESQTEMPQFYLCCGEQDMLLSANQQMAQALEQAQASYTFETGP GEHDWVFWDEWIQKALAWLPIPK >gi|307679256|gb|GL456471.1| GENE 44 38461 - 39927 1537 488 aa, chain - ## HITS:1 COG:lin0980 KEGG:ns NR:ns ## COG: lin0980 COG0477 # Protein_GI_number: 16800049 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 3 478 2 479 491 389 50.0 1e-108 MAKETNVKLVTVSVFVATFMTAIEGTIVSTAMPTIVGSLHGMEIMNWVFSIYLLTNAMLT PIYGKLADKIGRKPVFMIGIIIFILGSSLCGFAQDMLTLIIARAIQGVGAGAILPVALTI IADMYSLDKRAKILGLNSAAWGIASIFGPLAGGFIVDTVGWHWIFFINVPIGLVLLGLIS IFLVEPKRERTKMPMDILGSVTLMAVLLTLLLGFQMISDNGFTLVTFGCLSLSVLFFVAF VMIEKRAQDPVIDLHLFNQPTFVLVNLIAALISGFLMGIDVYIPMWMQGVLGKSAGIGGL VLAPMSLLWMAGSFIASSFMEKYAMKKVLTIGLSILLVGAIFLVVMPMAVPFWLFFVVSS VLGVGFGITITTTTVTAQSTVEPEKMGVATSFNTLVRTIGQTVMVSIFGVILNAGMFAKL EASALNVDADVMNQLVNPHTANLIPAALLKPLRGILYAGLHNVYLVGAGLVVVALLLNIF AKAQRAKV >gi|307679256|gb|GL456471.1| GENE 45 40097 - 41281 1771 394 aa, chain - ## HITS:1 COG:BS_metK KEGG:ns NR:ns ## COG: BS_metK COG0192 # Protein_GI_number: 16080107 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylmethionine synthetase # Organism: Bacillus subtilis # 4 389 5 394 400 594 77.0 1e-170 MTERHLFTSESVSEGHPDKVADQVSDAILDAILEKDPMARVACETSVTTGLVLVFGEIST TAYVDIQKIVRQTVKDIGYTRAKYGFDGETVAVLVAIDEQSPDIAQGVDAALEVRDQDEK DDIGAGDQGLMFGFAVDETPELMPLPIALSHRLVRRLAELRKEKVLPYLRPDAKSQVTVE YDDQGQPQRVDTIVISTQHDDETTLEQIEKDIKEQVINEVIPHELLDDETKYFINPTGRF VIGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDATKVDRSASYAARYIAKNIVAAGL AKKVEVQLAYAIGVAQPVSISINTFGTSALPESKLIEAVRKNFDLRPAGIIEMLDLRRPI YKQTAAYGHFGRTDIDLPWEQTDKVEALKASLAE >gi|307679256|gb|GL456471.1| GENE 46 41497 - 43374 1930 625 aa, chain - ## HITS:1 COG:L158566 KEGG:ns NR:ns ## COG: L158566 COG1835 # Protein_GI_number: 15674089 # Func_class: I Lipid transport and metabolism # Function: Predicted acyltransferases # Organism: Lactococcus lactis # 10 623 2 600 605 460 41.0 1e-129 MNQTANSKKKRYITGFDGIRTIAVIGVILYHLFPQVMRGGYLGVPIFFVVSGYLINDLLR QEWAENQTIDLKGFYVRRMKRLYPALIVMLLSAVSYITLFQQDLLNNIRSVVASSVFYYN NWWQIFKGFSYFDGFATQSPFVHIWSLAVEAQNYLIWPLLFILLERFVRKRGRIFSLVLI GALISVTLMAVLYVPGADPTRVYYGTDTRVFSILLGSALAYVWPSTRLKEEIPEASKKIL NGAGLSALVLLVLAFLTLSDHTNFVYYGGMFLISLAATVLVAVTAHPGADMNRWLTNPVF TWIGKRSYGIYLYQFPIMIFYEAKIKTLSDHVFLHSLVEIALILVVSELSYRFIEHPLTR LSYKDVWTQFTEFLRKPWDLREKGTMAFMTVISVIAVFGLIVAPANAKSAQQEQLEKNIA KNQQKIEERKKEVQESGTKNSSTSTESSTKPSESQDVLPAQLTPEQVKKAQNLEITTIGD SVILDGASGLQDIFPKMIIDGEVGRQLYSSISLIGELDKKKMLKDTVLVSLGTNGPFTEA QFDEFMKALGNRKVYWINVRVPTRRWQNQVNSLLSQMDKKYDNLTVIDWFNYSNAHDDWF YDDRVHPNVAGGEQYTHFIAEKILQ >gi|307679256|gb|GL456471.1| GENE 47 43575 - 44906 1448 443 aa, chain - ## HITS:1 COG:lin2555 KEGG:ns NR:ns ## COG: lin2555 COG1508 # Protein_GI_number: 16801617 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog # Organism: Listeria innocua # 16 442 18 447 447 331 42.0 2e-90 MKFEQRMSQQQKQVQKLAMTQQLQQSIQILQFNTEELAAFVEAKALENPLIDLQVDTQYT TDFPITSRSYTNQDEENNYMNQIPDYHLSLFESLIDQIHLNYRDTYLRTLVLFLVEYIDV NGYLKISLEEAAEKTEASAIQMLDALTLLQQLDPAGVGARNLQECLMLQTERDDTAPNLA YILLEEEFDALVSRKWGPLAKKFGIELAEIQLIFDYIQTLSPAPGNIFDATEELYIRPDL TVRIKEDRIVVISNKAGRPTLNFQENYFKRMQETDDKEVQEYIKDKKNEFEWLERAVNQR GDTILRVGQEIVRRQEAFFLEADRPLKPMTLKEIADALSIHESTVSRAVNGKYLETTFGV FELRSFFSTSILSSEEDGEDVSTTMVKKQLQKLIDQEVKSKPLSDQKLVERLKDSGMEIS RRTVAKYREALGIPSSSKRKRYE >gi|307679256|gb|GL456471.1| GENE 48 45650 - 45850 372 66 aa, chain - ## HITS:1 COG:L117090 KEGG:ns NR:ns ## COG: L117090 COG1278 # Protein_GI_number: 15672511 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Lactococcus lactis # 1 66 1 66 66 97 81.0 4e-21 MNNGTVKWFNADKGFGFITGEDGNDVFAHFSAIQSDGFKTLDEGQAVTFDTEEGPRGLQA TNIVKA >gi|307679256|gb|GL456471.1| GENE 49 46084 - 46491 446 135 aa, chain - ## HITS:1 COG:no KEGG:EF0780 NR:ns ## KEGG: EF0780 # Name: not_defined # Def: MutT/NUDIX family protein # Organism: E.faecalis # Pathway: not_defined # 1 135 1 135 135 259 98.0 3e-68 MKKEFSRVLLKNQYDEILILKDRPDTWNFPGGKQELGESALECAIREMKEELAVEITELE EIFTGPLVFDSIVWQGHFYFAKQVQGKVTLNEPNKIKGVQFIKRFEEVNFSPGLAPLFDY LARSDYLKLNKTNWK >gi|307679256|gb|GL456471.1| GENE 50 46517 - 48304 1427 595 aa, chain - ## HITS:1 COG:L58914_2 KEGG:ns NR:ns ## COG: L58914_2 COG0584 # Protein_GI_number: 15673979 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Lactococcus lactis # 344 583 1 240 249 270 56.0 8e-72 MSAWQTFKNGTRQFFKDILQYLWLFFTLNVLLLLVGGAFSWATSNALKTQGIPYLSFNNL NLLLEKPLALVLLILLLLLFLGAVFYQFTFLLLGIFQIRQDHRFHFKGVTKASFKVLKKQ GARSWLFFFGYFVVIVPFGNLIFQSNLLTKFVIPDFIVEFLSQRIPYLVGLLAFGLLVWY LAIRFIYTLPLMILERKKAGEAVKASWSMTNKRLWFIICNIAFVTIAVFVSTYVIYVLLY LLQLKLDTLSDTISLLGGILNLTVVQFLQFVSNAWLSVLLINFLYTQLNVLAETTTKVAF DKETKRNKLVTIGMGLGLFTIFGGYIIFNAVYLTGLLESKPLIISHRGVTNSNGVQNTIP AMERTIKFKPDYIEIDVQETKDHQFVVMHDANLQELAGVDGTPQEFTLAELTKMTVKENG QEAPIASFDDYLAKANQAKQKLLVEIKTSKQDSQGALSNFIEKYERPLIKNNHQVQSLDY NVIKAFKKAKSKVKVSFILPYNFTFPETQADLYTMEATTLNDTFILKADQQKKAVYAWTV NDSEVLSKMLFMDVAGVITDDLELVNEEVNDFEKNPSYADRILHYIFMLPSVASQ >gi|307679256|gb|GL456471.1| GENE 51 48376 - 48843 394 155 aa, chain - ## HITS:1 COG:no KEGG:EF0778 NR:ns ## KEGG: EF0778 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 155 1 155 169 144 98.0 9e-34 MIELILLLSVILLGLLIGNKRVDKWLFLKALLLFSVMLSVSILISVAMYLLLTIGVANVI GQRLESLFLLGIVVIISTSLLLYFLLNLTTKKIVLPIALMKIIEYYIQWVLIYVTIYQVI FDQFIVSSEVKNTLQGTIDEPVAIIIVILPSFISI >gi|307679256|gb|GL456471.1| GENE 52 49017 - 49400 311 127 aa, chain - ## HITS:1 COG:no KEGG:EF0776 NR:ns ## KEGG: EF0776 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 127 1 127 127 204 100.0 6e-52 MNKKISFSLLILLLSLLVGFTFIPHKKELSFNEYQEKKHSGETFYVVLKKKNCSDCQDFE KLLQAPKQVYYVELTNKETMKEWSTFIRENKVLHVPSMFKIDNGHLKKIDGEGDANQLFA NYQKITK >gi|307679256|gb|GL456471.1| GENE 53 49425 - 50453 1108 342 aa, chain - ## HITS:1 COG:no KEGG:EF0775 NR:ns ## KEGG: EF0775 # Name: not_defined # Def: anchor protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 342 621 962 962 504 96.0 1e-141 MVDDINKVLDITDVKVTDENGKDVTANGKVTQENNKVTFEMNKKDDSYDYLSGHTYTMTI TTKIKTDATDEELAPYIEQGGIPNQADLNFGNEGDVLHSNKPTVTPPAPTPEDPTITKDI EGQEHLDLTNRDQEFKWNVKTAFGNETSTWTQASMVDDINKVLDIADVKVTDENGKDVTA NGIVTQENNKVTFTMNKKDDSYSYLAGHIYTMTITTKIKADATDEELAPYIEQGGIPNQA DLNFGNEGDVLHSNKPTVTPPAPTPEDPKKTEPKQPLKPKKPLTPTNHQAPTNPVNFGKS ASKGIHLPMTNSTVNPLYMIAGLIVLIVAISFGVTKNKKRKN >gi|307679256|gb|GL456471.1| GENE 54 50505 - 52322 2106 605 aa, chain - ## HITS:1 COG:no KEGG:EF0775 NR:ns ## KEGG: EF0775 # Name: not_defined # Def: anchor protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 605 1 602 962 998 95.0 0 MFKKATKLLSTMVIVAGTVVGNFSPTLALAEGVVKAGDTEGMTNTVKVKDDSLADCKRIL EGQAAFPVQAGETEPVDLVVVEDASGSFSDNFPHVRQAIDEVVQGLSDQDRVMLASYRGG KQFIFPDGKVKINSADYDMNVRVDTQLTHDKSQFVSGFGDVRTYGGTPTASGLKLALDTY NQTHGDLTNRKTYFLLVTDGVANTRLDGYLHKTNTNDSINEYPDPRHPFQVSVEYSNDYQ GAAAEVLALNQEITNQGYEMINAYWESVESLSSVNSYFDKYKTEVGPFVKQELQQGSSTP EDFITSQSIDDFTTQLKQIVKDRLAQSTPATASLTIANQFDIQSATATDDAGNDVPVQIN GQTISATSTEGYVGNITIHYEVKENTAIDAATLVSSGTMNQGTIAKEFPEATIPKNDNAH ACDVTPEDPTITKDIENQEHLDLTNREDSFDWHVKTAFGNETSTWQQASLVDDINQLLDI QKVVVTDENGKDVTANGTVTQENNKVTFEMNKKDDSYSYLAGHTYTMTITTKIKTDATDE ELAPYIEQGGIPNQANLNFGNEGDVLHSNKPTVTPPAPTPEDPTITKDIEGQEHLDLTNR DQEFK >gi|307679256|gb|GL456471.1| GENE 55 52787 - 53191 487 134 aa, chain + ## HITS:1 COG:no KEGG:EF0774 NR:ns ## KEGG: EF0774 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 134 1 134 134 244 99.0 1e-63 MNEWPHQLMTLLTPLFELCILGLNVFSIIVLVWGVCLAGKDFIKSERQNQSRFTLTKMNT FIKNFLGSYILLSLEILIAADIIESIVKPTFQDILKLATLVIIRTVISYFLHKEIEDTMT DMEQQEKEPDTPKN >gi|307679256|gb|GL456471.1| GENE 56 53212 - 53730 561 172 aa, chain - ## HITS:1 COG:no KEGG:EF0773 NR:ns ## KEGG: EF0773 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 172 1 172 172 308 100.0 5e-83 MFVFIAGMVGVIVGALIVTASAALHSSYKERKEVRYRELEHLVKEIESLNLLNKKVKEIL QKRELYIDRSIEYLSMDDCFISIDDFIYLESFSAQNNFYLPTYLIEEFFKKIAHRKVILT ASEVAEMGGHTYKGGRVILENFSDEILAIIEDKKRKMQRLSNEPLHYFKAIK >gi|307679256|gb|GL456471.1| GENE 57 53926 - 54519 821 197 aa, chain + ## HITS:1 COG:lin2612 KEGG:ns NR:ns ## COG: lin2612 COG0740 # Protein_GI_number: 16801674 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Listeria innocua # 1 196 1 196 198 316 81.0 2e-86 MNLIPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPIDDNVANSVIAQLLFLDAQDSEKDI YLYINSPGGSVSAGLAIFDTMNFVKADVQTIVLGMAASMGSFLLTAGQKGKRFALPNAEI MIHQPLGGAQGQATEIEIAARHILDTRQRLNSILAERTGQPIEVIERDTDRDNYMTAEQA KEYGLIDEVMENSSALN >gi|307679256|gb|GL456471.1| GENE 58 54564 - 55082 631 172 aa, chain - ## HITS:1 COG:lin1051 KEGG:ns NR:ns ## COG: lin1051 COG1651 # Protein_GI_number: 16800120 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Protein-disulfide isomerase # Organism: Listeria innocua # 1 171 1 171 176 203 57.0 1e-52 MDISVIDATKVNTETGLHIGESNAPVKMIEFINVRCPYCRKWFEESKELLAQSVKSGKVE RIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQDEWGNLTLEEVATYAEKN LGLKEQKDATLVSAVIAEANAAHIQFVPTIIIGEHIFDESVTEEELRGYIEK >gi|307679256|gb|GL456471.1| GENE 59 55196 - 56119 1238 307 aa, chain - ## HITS:1 COG:no KEGG:EF0769 NR:ns ## KEGG: EF0769 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 307 1 307 307 569 100.0 1e-161 MVQRLISANASEIKRMSKEELFQSIKASEGRVILSENVVVHPSVAGDITCAEMSKAYGAD MILLNVFDVNQPIVVAAYEGQYTAETCVPNDEVVHRLKELVGLPIGMNVEPVDENLDLAS TRVSIEPGRKASAATFKKANELGLDFILLTGNPGTGVTNDLIAKNVALAKKHFDGIIIAG KMHSSGVDEPVVSLKSAEQFIEAGADIVLVPAVGTVWGIDDQQVKEVVDFAHSKGKLVMS AIGTSQESAQPEVIQAIGIRNKILGVDIQHIGDANMGLVGIENIKELSDAIRGKRHTVAR MARSINR >gi|307679256|gb|GL456471.1| GENE 60 56353 - 57288 1024 311 aa, chain - ## HITS:1 COG:lin2615 KEGG:ns NR:ns ## COG: lin2615 COG1481 # Protein_GI_number: 16801677 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 307 1 308 323 376 64.0 1e-104 MSFASDVKKELTGLEVHREHAKAELAALIRMNGSLSLVNQQFVLNVQTENAAIARRMYSL LKDHYHAQAELLVRKKMKLKKNNVYIVRLKQDTQKILADLDIMDGVVFNGNVSNEIMGNA QKMRSYLRGAFMASGSVNNPETSRYHLEIFSIYEEHNNDICKMLNYYDLNARTLGRRNGY ICYLKGAEKIADFLTLIGATNSMLKFEDVRIVRDMRNSVNRLVNCETANLNKTIDAASKQ IENIQFIESTVGLTSLPEKLQEIAELRLEYPEVSLKELGEMIPSGAISKSGINHRIRKIN EFAEKLREKSA >gi|307679256|gb|GL456471.1| GENE 61 57322 - 58317 1113 331 aa, chain - ## HITS:1 COG:SP1565 KEGG:ns NR:ns ## COG: SP1565 COG0391 # Protein_GI_number: 15901408 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 6 326 1 321 325 428 64.0 1e-120 MKTYRIRKPKIVVVGGGTGLPVILKSLRNQSVDITAVVTVADDGGSSGELRSSINNMTPP GDLRNVLVALSDMPQLYEDIFQYRFDKSDSHFANHAIGNLIIAAVSEMRGSTYEAIQLLS KMMHVDGRIYPSSERPLTLHAVFKDGSVAVGESKIALDRKTIDHVFVTNTHGEEQPRAAR KVVKAIEEADMVVLGPGSLFTSILPNLVITEIGEAIKQTAAEVVYICNIMTQKGETEHFT DADHVRVLNEHLQAQFVDTVLVNTEKVPENYMDPEIYDEYLVQVKHDFQGLREEGCRVIS TDFLELRDGGVFHDGEKVVEELFRIVFGTKY >gi|307679256|gb|GL456471.1| GENE 62 58317 - 59204 1120 295 aa, chain - ## HITS:1 COG:lin2617 KEGG:ns NR:ns ## COG: lin2617 COG1660 # Protein_GI_number: 16801679 # Func_class: R General function prediction only # Function: Predicted P-loop-containing kinase # Organism: Listeria innocua # 3 290 4 290 291 374 63.0 1e-103 MPENLQLVIITGMSGAGKTVAVQSFEDMGYFCIDNLPPSLIPKFWELIKESGKVTKIALV IDLRSRTFFREIQDMLVELENTNFIDTTILFLDATDEELVSRYKETRRAHPMAMDGLVTE GIRKERAMLEEIKADAQLVIDTTDLSPRQLRERLNKELATRETHEFRVEMVSFGFKYGLP IDADIVMDVRFLPNPHYIDELRPLTGMDQPVYDYVMGFPETDEFYTKFIDLLRTVLPGYK KEGKSSVTIAIGCTGGQHRSVALTERVGAELKEEDYHVNITHRDRLKRKETVNRS >gi|307679256|gb|GL456471.1| GENE 63 59370 - 60164 845 264 aa, chain - ## HITS:1 COG:no KEGG:EF0764 NR:ns ## KEGG: EF0764 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 188 1 188 188 316 100.0 6e-85 MKNKKITTSLLTAGMVLAIGITPFVHSNTMEAATLISQSDHEKVMSFTKKDLKEATGIQL EPATVQAVHQELKQQITWETLGYSTIDAQNIATRFTQNTYQALGILTDIANHSDLQLKVI TINNPYLATAKIGTFKWETVTPEVGGDHETADNELTTPTPTVASLQEIDVEIEYDENEIE FTYEIKSNGTIEATYEDESADLELEGKAAQDKIMTLLDGLSIKTATNEQIKEHITKKLAV NEQVKQFEFEANFTDKTEIEFVLK >gi|307679256|gb|GL456471.1| GENE 64 60336 - 63155 3094 939 aa, chain - ## HITS:1 COG:SP0186 KEGG:ns NR:ns ## COG: SP0186 COG0178 # Protein_GI_number: 15900123 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Streptococcus pneumoniae TIGR4 # 4 935 3 937 943 1501 79.0 0 MANDKIVIHGARAHNLKNIDVTIPRDKMVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLS AYARQFLGQMDKPDVDSIDGLSPAISIDQKTTSKNPRSTVGTVTEINDYLRLLFARVGHP ICPNDHIEITSQSVEQMVDKVLELPERTKIQILAPVVVKKKGQHKKVFEMIQREGYVRMR VDGETYDVSEAPELEKNKKHDIAIVIDRIVVKEGIRSRLFDSFEAALRLAEGYAIVDVIG QEEMLFSEHYACPYCGFTVGELEPRLFSFNAPFGACPDCDGLGVKLEVDKDLVIPDPTKT LREGAIVPWNPISSQYYPQMLEQAATSFGIDMDTPFEELPADQQEIILNGSGEKNFHFHY ENDFGGVRDVEVPFEGILKNIKRRYHETNSDFTRDQMRLYMTELTCRSCQGYRLNPQALA VKINGTHIGEVSELAIKNAVQFFEGVSLSEQETTIARPILKEVEDRLTFLKNVGLDYLTL SRAAGTLSGGEAQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIDSLKKMRDLGNT LIVVEHDEDTMMASDYLIDVGPGAGHLGGEIVAAGTPEEVAKNPHSLTGQYLSGKKVIPV PKERRKGNGKAIKVTGASENNLKNVSVEFPLGEFVAVTGVSGSGKSTLVNQILKKALAQK LNRNSNKPGKHKSITGYEAIEKIVDIDQSPIGRTPRSNPATYTSVFDDIRDLFAQTNEAK VRGYKKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCHGKRYNSETLEVHYKG KNISDILDMTVEDAVEFFKHIPKIHRKLQTIVDVGLGYVTLGQPATTLSGGEAQRMKLAS ELHKNSNGKNFYILDEPTTGLHTDDIARLLLVLERLVEAGNTVLVIEHNLDVIKSADHVI DLGPEGGDGGGTIVATGTPEEVAKVKDSYTGYYLKRVLK >gi|307679256|gb|GL456471.1| GENE 65 63273 - 65270 2374 665 aa, chain - ## HITS:1 COG:SP1238 KEGG:ns NR:ns ## COG: SP1238 COG0556 # Protein_GI_number: 15901100 # Func_class: L Replication, recombination and repair # Function: Helicase subunit of the DNA excision repair complex # Organism: Streptococcus pneumoniae TIGR4 # 1 663 1 660 662 994 77.0 0 MIERETSNTFHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQE VNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI NDEIDKLRHSATSSLLERNDVIVVASVSCIFGLGDPREYSQQVVSLRVGMEMDRNELLKS LVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHALRVEFFGDEIDRIREVDALTGEIV GETEHVAIFPATHFVTNEEHMEHAISQIQEELEARLKVLRSENKLLEAQRLEQRTNYDIE MMREMGYTSGIENYSRHMDGRQEGEPPYTLLDFFPDDFLLVIDESHVTMPQIRGMYNGDR ARKQMLVDYGFRLPSALDNRPLRLEEFEQHVNQIVYVSATPGPYEMEQTETVVQQIIRPT GLLDPEVEIRPIMGQIDDLVGEIHERIEKDQRVFVTTLTKKMAEDLTDYFKELGLKVKYL HSDIKTLERTEIIRDLRLGEFDILIGINLLREGIDVPEVSLIAILDADKEGFLRSERSLV QTMGRAARNAEGKVIMYADKITDSMQRAMDETARRRAIQEAYNEEHGIEPKTIIKEIRDL ISISKTADKDETVVQLDKSYEDLSRQEKADLLMKLEREMKDAAKALDFETAATLRDTILE LKAAK >gi|307679256|gb|GL456471.1| GENE 66 65549 - 67717 2452 722 aa, chain + ## HITS:1 COG:L165_1 KEGG:ns NR:ns ## COG: L165_1 COG0834 # Protein_GI_number: 15673741 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Lactococcus lactis # 1 521 1 507 509 453 45.0 1e-127 MKRKHFLLSFFVMMVTLLTFISSTSAHAEGKKYTIGTDLTFAPFEFQDSKGKYIGIDVDL LDAIAKDQGFEVDLKPLGFDSAVQAIQSKQIDGMIAGMSITDERKKSFDFSDPYFDSGLQ LAVKKGNDKIKSYDDLKGKTVAAKVGTESANFLEKNKEKYDYTIKNFDDATGLYKALENG EADAIVDDYPVLGYAVKNGQKLQLVGDKETGSSYGFAVKKGQNPELIKKFNAGLKNLKDN GTYDKILNNYLATGDETNTQDAGEQMKKITPKKEKYVIASDSTFAPFEFQNAQGDYVGID VDLVKRAAELQGFTVEFKFIGFSSAVQAVESGQADGMVAGMTITDDRKKAFDFSVPYFDS GIQIAVKKGNDKIKSYDDLKGKKVGVKIGTESADFLEKNKKKYDYSIKYLDTTDALYSAL EIGEVDAMMDDYPVIGYGVAQNQPLATPIPREKGGSYGFAVKKGQNPELLEMFNEGLKEM KRTGEYDKIIGTYVKDGNEAKEETADESTFVGFMQNNWKQLLHGLWMTILLTLISFVLAL IVGVIFGLFSVSPIKALRVLSTIYVDLIRGIPLMVLAFFIYFGLPGVLGFNIPVFIAGII TLTLNASAYISEIVRGGIKAVPVGQMEASRSLGLSYNRTMQKIILPQAIRIMIPSFINQF VISLKDTTILSAIGLIELLQTGKIIVARTLQSTMVYFVIALIYLILITSLTKLAKNLEKK VN >gi|307679256|gb|GL456471.1| GENE 67 67719 - 68456 296 245 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 219 1 221 223 118 33 1e-25 MTEKILVEHLVKKYGDNTVLNDINVSINEGDVVCVIGPSGSGKSTFLRCLNQLEEASSGD IIIDGANLTDKNTDINQVRQHIGMVFQHFNLFPHLSILENIVLAPTDLGRLSKDEAEKKA LELLERVGLADKKDAYPDSLSGGQKQRVAIARALAMNPDIMLFDEPTSALDPEMVGDVLG VMKDLAKQGMTMVIVTHEMGFAKEVANRVMFIDGGNFLEDGSPEQVFENPQNPRTKDFLD KVLNI >gi|307679256|gb|GL456471.1| GENE 68 68504 - 68713 275 69 aa, chain - ## HITS:1 COG:no KEGG:EF0759 NR:ns ## KEGG: EF0759 # Name: not_defined # Def: SapB protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 69 171 239 239 129 100.0 6e-29 MIKESRLHEQLQASLEKGERLVELTLESEQEAVTAKISYVGKEDFWHSNLHHLLKEKGHV QSVSVTETI >gi|307679256|gb|GL456471.1| GENE 69 68867 - 69223 451 118 aa, chain - ## HITS:1 COG:BH3225 KEGG:ns NR:ns ## COG: BH3225 COG1285 # Protein_GI_number: 15615787 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Bacillus halodurans # 11 118 1 101 232 74 37.0 4e-14 MNSLKMIELSLTDVVIRMALAVVFGALIGLERSIKRKGFGISSNAILCLASCTISILQIQ SVDILVDVVKQNSALASIISMDITRYGAQVISGVGFLGAGIIVFRERKVSGLTTAVMM >gi|307679256|gb|GL456471.1| GENE 70 69259 - 71163 2088 634 aa, chain - ## HITS:1 COG:BH0744 KEGG:ns NR:ns ## COG: BH0744 COG2217 # Protein_GI_number: 15613307 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Bacillus halodurans # 22 630 32 636 637 452 43.0 1e-126 MSKQTGAHTHEEKGKNVPVILFFTGLALFFIGLFLGNMLLVKNILFSLAAILAGYHIIGE GFGDTYRDTKNNRKFSPNIHLLMTLAAVGSALMGSFEESALLILIFAAAHFLEDYAQGKS QREITKLLNLNPTEARLITDDGSIQTVSVEQLKIGDRVQVLNGAQIPTDGVVIEGSTAVD ESSINGESIPKEKNSGDPVFGSTMNGSGTIVVEVTKDSSETVFAKIVQLVNQSQENQSEI ASKIKRFEPKYVTLVLAVFPLIVLGGALLFQLTWAESFYRGLVFLIAASPCALAASAVPA TLSGISNLAKQGVLFKGGSFLSNLAEVKALAFDKTGTLTKGKPEVTDYLFVDGLEDRQDE LVAVLTNMEKKSNHPLATAIVNRFEAETTALNLEVENIVGVGLVTTIVDTTFRIGKPSSF EQVPTIIEKQTTKLASEGKTVVYFAENEQVIGLVALMDVPNEEAMNAIHYFKSQNIETTM ITGDAKLTGEAVGRLVGVDQVFANVLPEEKSAIVDQLKREVGMTGMVGDGINDAPALVNA DIGVAMGDGTDIAIDVADVVVMKNDLSKLGYAHRVSKRLNKIVQQNIIFSMLVVATLIIL NFLGIANIAFSVLIHEGSTLVVIFNGLRLLVNTK >gi|307679256|gb|GL456471.1| GENE 71 71273 - 72721 1007 482 aa, chain - ## HITS:1 COG:no KEGG:EF0757 NR:ns ## KEGG: EF0757 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 482 1 482 482 872 98.0 0 MMNYEIFLNKEDQRSYSLLRHLEESPTLSGTFIALREELSMSNFLVKKTLEKLKADIDNL KLSDSLTLVVSDVDVTLEIDGNYSSKLLLTKYLTESLSFKLVLSYFRGNYSLTKFAECNH VSTSVAYSTLQRLKKALKEYQIYFSKREIVGNQKAISFFLYKLFTLSNQPISELYSVKVY NEAKCVLQSVELNYTFTTYERRNFFHYLAIMINNEGRAVEGIDTRALNTFSEELIKKSQV EWALSSKSLTYTIVFFLYLHGKLEKKYVIHEDPMIESLTRVFIGSFEKAFNCLEESTRNT LEEGLAIIHFNVIYFPINMFDDFEMDLQFFKQTYPEFYFYLIEYIRWLTAKHKKIAKANH CLFFHYLLLLINHVPVHLIAEPAKVLIDFSYGKEYNQFIKKNLSVYVNLNVEIIDPLSDT LPDVVITNLNNLYQEEQSKVMVWLDPPRSIDWVNLTQSLLTIQEEKYQQQKESTKTSGDP IE >gi|307679256|gb|GL456471.1| GENE 72 72725 - 73174 298 149 aa, chain - ## HITS:1 COG:no KEGG:EF0756 NR:ns ## KEGG: EF0756 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 149 1 149 149 215 99.0 4e-55 MDKYKHLLLWSTLLLSFFQVTNVQAAEERNPIYNPTNPTEEIYPIENTGTPEKMEETNES TITSETQAEESSEDVSKKEVTTNNPKTNEERPSSKKSQHQVFFTDELFDASHITIVPNST GGAGTEGQNTFYLNFIRELVGTAIYGRKN >gi|307679256|gb|GL456471.1| GENE 73 73376 - 74470 814 364 aa, chain - ## HITS:1 COG:no KEGG:EF0755 NR:ns ## KEGG: EF0755 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 364 1 364 364 572 99.0 1e-161 MNRKKQRFLFFPILLILLALVPSNGFASEFNFAVTPIPSEKQVDKEKTYFDLLLAPNEET ELKVNLRNDTDKEVKVGISINSAITNSNVIVEYGENKGKKDQSLAFDIKDYVQYPSSVRL KPKSEQTVSINVKMPNTPFDGVLASGITFKEETSDEGKRQDDKSQGLSIKNEYSYVVALL MQQNKKKVEPNLLLKKVSPGQINARNVILVNLQNDQKTYINQVAFSAEITKKGHEEVLYK EEKANMQIAPNTNFSVPIALKGQPLKPGDYHLSMTVVGNKDAAGSFKKSINNESISFRNQ WQFEKDFTINGKVAKELNEKDVTLKENHSNLYLMIGLLLLLIVILIITWLIWRKKKQEKN EREI >gi|307679256|gb|GL456471.1| GENE 74 74546 - 75286 878 246 aa, chain - ## HITS:1 COG:no KEGG:EF0754 NR:ns ## KEGG: EF0754 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 246 1 246 246 390 99.0 1e-107 MKKVTTVCLSTFILGSLGMTSQTFAEDGGSYTSNGIVEFTPSEEPTNPVDPTDPTNPVDP IDPTDPEGPNPGTNGPLSIDYASSLDFGVQKITSKDQTYFAATQKYKTVGATDEVKEGPN YVQVTDNRGTEAGWSLKVKQEGQFKSTSGKELTGAAITFKNGNVVTASDSGKPTGPATIT LNSDGSQSDVMSAAKGNGAGTYLFDWGTDATTAAKSIELTVPGSTTKYAEKYATKLTWTL TDAPGN >gi|307679256|gb|GL456471.1| GENE 75 75450 - 77408 1709 652 aa, chain - ## HITS:1 COG:no KEGG:EF0753 NR:ns ## KEGG: EF0753 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 652 1 652 699 1177 98.0 0 MRNKQSLVFLASSLFLLLLAPITSEAISNPSTNINEVNREIVEESANDQATSAASHSETL EQESSLGTTTTTDNHPAETDQSTATLEPSKQQKDDDNSATESAIVEPQPRMLAAPYAASL PDDPNIIPIDKVFQEPIGNATSILEGGKLLQLNPAVKSQKGAIWSKKPISLLSDFTFKSY LYLGNEYANAGDGMTFTLTNDPRMSTTPQEVIGSPGMGIGAYSTKAGQPYVRNALSIEFD TYKNTGSSNRMDREISQDKGNGHLAFVTPKANNNSYTGEHSGVTVAPTYLSNGTWRMLTV HWNAAAKALTYDLEGVGTNTYVVSDLNAQFGATTVYWGFTSSTGGKYQENALAMTQIPTN VTSQAALSVNGQEFSSAVEAVKNDQVRLRNTLNIDNDFIEDRQPQVSIDLPDELAYEENS LTIDGKKVAAKDLTQTGNHLTIALNDYLVLKKDMIIELKTTLQDNTPEKVLTMNFDYYEE GTLLQKSNNVTITIPKPTEKTVTVFYKDAEGKDIAPPKSVTGKIGAPYQEKPLDISGYVF TKDSGNAEGTMTEETKDIYFYYRLGELYFKEAPKQITFGTEKIRNQPLIKLGHPTEGLKV VDERNANNWRLQLKQTQPLTNDSIVMPDVFSFVSTAGSSQITNEAITLLESN >gi|307679256|gb|GL456471.1| GENE 76 77428 - 78207 979 259 aa, chain - ## HITS:1 COG:no KEGG:EF0752 NR:ns ## KEGG: EF0752 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 259 1 259 259 453 99.0 1e-126 MKKQFTGIVLCSTFAVAGWSLQAKAEEPKEYRSNGLVEFIPNVDPTEPVDPENPDPEKSV KPIDPTDPEGPNPGTQGPLSIDYASSFDFGKNRISNKDQVYFARAQQYQENQKETPNFVQ ISDNRGTNSGWSLTVTQKEQFKATKATLNSQLTGAQISLANPTVNSNAQNVEKPEATNKI ALVPGTASLVAAAKQGTGAGTWATYWGKVEVVAERDETNTVHNVNVTKDVALSVPGSTPK DAVKYQTKLLWTLTDVPGI >gi|307679256|gb|GL456471.1| GENE 77 78224 - 78955 859 243 aa, chain - ## HITS:1 COG:no KEGG:EF0751 NR:ns ## KEGG: EF0751 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 243 1 243 243 423 100.0 1e-117 MKKTVLLTSATILLGVGFQAINASAAETFPKEYNTEGTITFEAGDNEITPPVDPENPDPT DPVDPIDPPGPGTGGALSIDYGSKFKFGTQKISTADQTYYAAPDEMKDGSKKPTYVQVTD KRGTLAGWKLTLSQPEQFKTATGEELVGAQLTFTKAEAASMVDEKYKPTEVSSTISLTPG VNNNLAMNAKKETGVGTWVYRFGSNEATNKEAVQLFVPGKSVKLAQQYSTKLVWALEDTP ANN >gi|307679256|gb|GL456471.1| GENE 78 78955 - 79293 280 112 aa, chain - ## HITS:1 COG:no KEGG:EF0750 NR:ns ## KEGG: EF0750 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 112 1 112 112 192 96.0 4e-48 MKIIKRFSLVCLGLLIIGLQTKSVMAEENNYESNGQASFYGTYVYENEKESNDIAYTQQS EEQGRNNLTASGQAVLPKTGESENPLYSLIGVSLLGVVIYLINKMKREKELI >gi|307679256|gb|GL456471.1| GENE 79 79517 - 80467 1304 316 aa, chain - ## HITS:1 COG:SA2481 KEGG:ns NR:ns ## COG: SA2481 COG1054 # Protein_GI_number: 15928275 # Func_class: R General function prediction only # Function: Predicted sulfurtransferase # Organism: Staphylococcus aureus N315 # 1 308 1 308 318 494 75.0 1e-140 MKYQVLLYYKYTTIEDPEAFAKEHLAFCKSLNLKGRILVATEGINGTLSGTVEETEKYME AMQADERFKDTFFKIDPAEEMAFRKMFVRPRSELVALNLEEDVDPLETTGKYLEPAEFKE ALLDEDTVVIDARNDYEYDLGHFRGAVRPDIRSFRELPQWIRENKEQFMDKKIVTYCTGG IRCEKFSGWLLKEGFEDVAQLHGGIANYGKNPETRGELWDGKMYVFDDRISVEINHVDKK VIGKDWFDGTPCERYINCANPECNRQILTSEENEHKHLGGCSLECSQHPANRYVKKYNLT EAEVAERLALLEAVEV >gi|307679256|gb|GL456471.1| GENE 80 80963 - 81544 478 193 aa, chain - ## HITS:1 COG:mlr4962 KEGG:ns NR:ns ## COG: mlr4962 COG4420 # Protein_GI_number: 13474144 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Mesorhizobium loti # 2 182 105 285 307 165 46.0 6e-41 MITLAELLNYRLDYMKQLVANDSEKIQQLNELVVQHIKEDKLISNNMNEKMEKKLTFGQR AADTIAKFGGSWVFIGFFCFVLIAWIVINSTTLLGQPFDKYPYILLNLALSCLAAIQAPI IMMSQNRQEARDREQANNDYKINLKAEVEINLLHEKMDYIINNQLENLVKIQNIQIELLG ELQEQLAATSEKE >gi|307679256|gb|GL456471.1| GENE 81 81601 - 81672 95 23 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKQSKNKQVVIGESTKKTFIFKI >gi|307679256|gb|GL456471.1| GENE 82 81771 - 82937 969 388 aa, chain - ## HITS:1 COG:BS_pbpX KEGG:ns NR:ns ## COG: BS_pbpX COG1680 # Protein_GI_number: 16078758 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Bacillus subtilis # 79 379 90 386 391 143 29.0 5e-34 MRKRHAKKRHGGVNWLFIVCLLVVIGGSGYLIKTFFFTRDSQVSQESKVVLEEDRRSDNY ANLTKEIVAPDSGELDKKIQETNYIGSALIIKDDQVLVNKGYGFANFEKQQANTPNTRFQ IGSIQKSFTTTLILKAIEEGKLTLDTKLATFYPQIQGAEDITISDMLNMTSGLKLSAMPN NIVTDEEIIQFVKQNTIQVNKGKYNYSPVNFVLLAGMLEKMYQRTYQELFNNLYHKTAGL KNFGFYETLLEQPNNSTSYKWTEDNSYNQVLSIPAASFAHEFGTGNVDMTTGDLYWYLHQ LMSGHLVSTALLQKLWTSSQQSSYHGGIYVHDNYLRLHGVEAGQQALVLFSKDMKTGVIL LTNCVNPAKYKELIGSLFHDVTNLPVKF >gi|307679256|gb|GL456471.1| GENE 83 83119 - 83499 527 126 aa, chain - ## HITS:1 COG:SA1340 KEGG:ns NR:ns ## COG: SA1340 COG0346 # Protein_GI_number: 15927090 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Staphylococcus aureus N315 # 7 120 6 121 123 81 39.0 4e-16 MFSNQVKIMLYVNNVEESSQFWQTFGFVEKEREEVDGTLVIEIAPSESAEAIIVLYDLAF IQKHSPEVAGNTPSLMFASDDIIGLYKKMQEAGVTVGEMVQLPTGLVFNFADNDDNYFAV MGQESK >gi|307679256|gb|GL456471.1| GENE 84 83649 - 85040 1874 463 aa, chain - ## HITS:1 COG:BS_yhcL KEGG:ns NR:ns ## COG: BS_yhcL COG1823 # Protein_GI_number: 16077978 # Func_class: R General function prediction only # Function: Predicted Na+/dicarboxylate symporter # Organism: Bacillus subtilis # 1 461 1 460 463 424 57.0 1e-118 MTTFITVLVILAFIAVLFGFYQMQKKHLKFSTRVFSALGVGIVLGAIIQFAFGTDSKITT QSMEWIGIVGNGYVAFLQMLVIPLVFVSIVGAFTKMKESNKLGKISFNVLATLLGTTAVA ALVGIGTTLAFGLQGAKFTQGAAETSRIAELATRQDAIQDLTIPQQIVSFIPKNVFADFA GTRPMSTIGVVIFAAFVGVAYLGVRRKAPKEAEFFANLIDSLYKITMRIVTLVLRLTPYG VLALMINVVATSDFVAIINLGKFVLASYVALIIVFAIHMLILITLKVNPVTYLKKVFPVL SFAFTSRSSAGALPLNIETQTKALGVDDATANFAGSFGLSIGQNGCAGVYPAMLATIVAP TVGIDVFSLQFILMLVAVVTISSFGVAGVGGGATFASLIVLGAMNLPVAIVGLVISVEPL IDMARTAVNVNDSMVAGVLTSARIHELDRDVLNDRDVVLDANI >gi|307679256|gb|GL456471.1| GENE 85 85024 - 85173 96 49 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MMNVVILVPPYVFNDKYIKGSKGSRYSLSSKYPENSKLFPVIVLLYLIL >gi|307679256|gb|GL456471.1| GENE 86 85335 - 85670 478 111 aa, chain + ## HITS:1 COG:no KEGG:EF0743 NR:ns ## KEGG: EF0743 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 111 1 111 111 207 96.0 9e-53 MQKICWILSVNRDGAMLYVGSPANGGPWLFSNKEQQNIKAFFQPTYEINFISYDVLSEEV PEAAFILYNEILAPYLPEKITKVGQPIAYVDIATKNYEQFKKALVAKSSQE >gi|307679256|gb|GL456471.1| GENE 87 85717 - 86103 625 128 aa, chain - ## HITS:1 COG:SP1558 KEGG:ns NR:ns ## COG: SP1558 COG4835 # Protein_GI_number: 15901401 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 122 5 128 128 92 44.0 1e-19 MEIKRQQEIVEAYHYDMRVPDSEVETDLRVSFSPIEVEEENYPENSSALVARLEFRIVFD EFVLSGAISQINHIIDRKIEKQEDISQEEVDELVRPLFSIVERLSYEVTEIALDRPGVQL NFQQSEEA >gi|307679256|gb|GL456471.1| GENE 88 86216 - 86647 192 143 aa, chain - ## HITS:1 COG:no KEGG:EF0741 NR:ns ## KEGG: EF0741 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 143 1 143 143 240 96.0 1e-62 MGQIWFERILRWRKKAQRFLQGRYARFDELNRTLLLTSVVLALINIFTGYLWVRLLILIT VAYVYYRFFSKHIHPRLNENQRFILRKQRLMQKVHAFRKRHLTQKRYRYFKCPKCQQSLR APKGRGTIKVTCSNCRNQFIKKV >gi|307679256|gb|GL456471.1| GENE 89 86997 - 87641 895 214 aa, chain - ## HITS:1 COG:L93481 KEGG:ns NR:ns ## COG: L93481 COG1428 # Protein_GI_number: 15672477 # Func_class: F Nucleotide transport and metabolism # Function: Deoxynucleoside kinases # Organism: Lactococcus lactis # 1 213 1 213 217 293 71.0 2e-79 MAVIVLAGTIGAGKSSLTALIANRLGSEAFYESVDDNEVLPLFYAEPEKYAFLLQIYFLN KRFDSIKQALTHENNVLDRSIYEDSLLFHLNADLGRANETEVKVYDDLLQNMLQELPYAA HKKRPDLLVHIRISFPKMLERIKKRGRPYEQIETDPTLYDYYQMLNERYDQWYEDYDESP KIQIDGDKYDFVEDPEACQYVLALIEKKIEELER >gi|307679256|gb|GL456471.1| GENE 90 87650 - 88348 652 232 aa, chain - ## HITS:1 COG:PM1838 KEGG:ns NR:ns ## COG: PM1838 COG3201 # Protein_GI_number: 15603703 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinamide mononucleotide transporter # Organism: Pasteurella multocida # 1 225 1 226 234 88 29.0 8e-18 MNKNFLVNDFKGWETRSYLFLALMVGVQLIAFAINPSNWITLVGGLAGIICVNLIAQGKV SNYIFGLISAVIIGYFGLVTRVYAEVLLQSFYIIMDITGLYAWLRASEDGSGQVTEVKVL KGIQWLYAFFTWLLIGVAAYILLGFVNDAQQTLDAITFSVSATGMLLMIKRYQSQFVFWL LGNIFSILLWFRVGTHAGGDYAIFVMYCMYTFNSIFGMFNWLKIKNKMEKNR >gi|307679256|gb|GL456471.1| GENE 91 88596 - 88712 75 38 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIPAADPFTTVALQINVAKAEATVHIYASNTAIVHSFY >gi|307679256|gb|GL456471.1| GENE 92 88903 - 90489 1793 528 aa, chain - ## HITS:1 COG:lin0842 KEGG:ns NR:ns ## COG: lin0842 COG0154 # Protein_GI_number: 16799916 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases # Organism: Listeria innocua # 29 508 141 631 639 273 38.0 5e-73 MSKFLKVIGIIAVLLVIIGAAAYWFILKKFTPEAETPAMYNQERIVKTIEDQLKETDVQK ARTKAPLIIEKNITELQQAIADGALTYEELTAFYLDRILQFDQIDNGMNSISEINPQAIK EAKAFDQQASQTPKKPLYGIPVTLKENINTTNMISSAGAYALRTFKPKEDAEVVKKLTEA QALILGKVNLSELANYMSMKAPSGYSSKHGQTLNPYGPLKITPSGSSSGSGASVTMNIGA FSLGTETMGSIVSPASHQSVVGFKPTHSSVSGEGVLPLAPSLDTVGPIARSVVDAAQGYN AFKKDTVPSIDSTKFTKNNLQGQRIGLLEMPSAEEEFATAKKALQKAGAEVIPVTPDMEG IDGGKVISNEFKFALEEFAKRYDLPFKTLEELIAYNQQDKKVRAKYGQDLLEADVKKKQP DKEIIQTTIKKAQQTFDALLKKQQLDGYAFIDSEGTGLSAVAGYPELTVPLAKNSEGQPY GLTFTQTANKEQTLFEQAYSFEQSTKGRIVLSDNELLANSKKINRDEQ >gi|307679256|gb|GL456471.1| GENE 93 90686 - 91615 1256 309 aa, chain - ## HITS:1 COG:yqeA KEGG:ns NR:ns ## COG: yqeA COG0549 # Protein_GI_number: 16130776 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Escherichia coli K12 # 3 309 4 310 310 300 53.0 3e-81 MSKIVIALGGNALGNSSKEQLAKAQTAAKSIVDLIEQGHQVVIAHGNGPQVGKIRLAFEE TSQSPEDVVPFPECTAMSQGYIGYHLQQAIDEELVARNLGEQPVVTLITQVVVDPKDPAF TKPTKPIGGYYDEETAKQLMAETGNVYQEDAGRGWRRVVPSPKPVDIYEKVSLRTLVDAG QIVIACGGGGVPIAYDGPVYHGVDAVIDKDFAAAKMAELIEADVFVVLTAVEHVFVNFGQ ANQQALTDVTVTAMQQYIEENQFAPGSMLPKVEAAISFAESKPNRQAIIGLLELASEAIK GESGTRITQ >gi|307679256|gb|GL456471.1| GENE 94 91627 - 92724 1160 365 aa, chain - ## HITS:1 COG:L136332 KEGG:ns NR:ns ## COG: L136332 COG2957 # Protein_GI_number: 15673679 # Func_class: E Amino acid transport and metabolism # Function: Peptidylarginine deiminase and related enzymes # Organism: Lactococcus lactis # 1 364 1 364 366 654 83.0 0 MAKRIVGSTPKQDGFRMPGEFEPQEKVWMIWPERPDNWRDGGKPVQEAFTNVAKAISQFT PMNVVVSQQQFQNCRRQLPPEITVYEMSNNDAWVRDCGPSFVINDHGEIRGVDWTFNAWG GLVDGLYFPWDQDDLVAQKICEIEHVDSYRTDDFVLEGGSFHVDGQGTVLTTEMCLLSEG RNPQLSKEAIEQKLCDYLNVEKVLWLGDGIDPEETNGHVDDVACFIAPGEVACIYTEDQN SPFYEAAQDAYQRLLKMTDAKGRQLKVHKLCCPVKNVTIKGSFKIDFVEGTMPREDGDIC IASYMNFLITNDGVIVPQYGDENDRLALEQVQTMFPDKKIVGVNTVEVVYGGGNIHCITQ QEPKR >gi|307679256|gb|GL456471.1| GENE 95 92717 - 94093 1361 458 aa, chain - ## HITS:1 COG:L138484 KEGG:ns NR:ns ## COG: L138484 COG0531 # Protein_GI_number: 15673681 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Lactococcus lactis # 3 448 4 449 466 581 73.0 1e-165 MEGKKKFSLTSAILSVICVVFVAEAAAPVAAIGNSQFFWWIFLLIAFLLPYGLISSELGT TYIGEGGIYDWVTKAYGHRWGARVSWYYWINYPLWLASLAVMTPELLTTITGIKFSTPMM IIVELIFTWIVVWISFYPVSDSIWILNGAAVIKMVLAVLIGGLGLYVALTKGVANEFTLK SMLPTFDLRSLSFISVIIFNLLGFEVICTFADDMENPKKQIPQAIVAAGLVIAAIYIFSA FGIGVAIPTDQISTGSGMMDSFKLLTGSTEGWFIMLMAFLFLLTLFENMISWSLGVNNTA CYAAENGDMPKFFEKRSKKNDMPIGAALMNGIVASVVIVLAPILPNQDLFWAFFSLNVVL FLLSYIPVFPAFYKLRKIDPDTPRPFKVNGKPGFLKVLVVLPMIMIIISLIFTAVPLDFS PAALNEKLPITIGAIIFILFGEVIIYVKKIKKGTKENG >gi|307679256|gb|GL456471.1| GENE 96 94160 - 95179 1210 339 aa, chain - ## HITS:1 COG:L0113 KEGG:ns NR:ns ## COG: L0113 COG0078 # Protein_GI_number: 15673682 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Lactococcus lactis # 2 334 6 338 340 554 79.0 1e-157 MKRDYVTTETYTKEEMHYLVDLSLKIKEAIKNGYYPQLLKNKSLGMIFQQSSTRTRVSFE TAMEQLGGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVERHHSIVDLANCATIP VINGMSDYNHPTQELGDLCTMVEHLPEGKKLEDCKVVFVGDATQVCFSLGLITTKMGMNF VHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDASSVEGADFLYTDVWYGLYEAELSEE ERMKVFYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVTDEVIDGKNSICFDEAENRLTS IRGLLVYLMNDYEAKNPYDLIKQAEAKKELEVFLDTQSI >gi|307679256|gb|GL456471.1| GENE 97 95458 - 96423 582 321 aa, chain + ## HITS:1 COG:L0226 KEGG:ns NR:ns ## COG: L0226 COG2771 # Protein_GI_number: 15673683 # Func_class: K Transcription # Function: DNA-binding HTH domain-containing proteins # Organism: Lactococcus lactis # 1 315 1 325 328 209 41.0 8e-54 MTFVFIYNILLIILYSFTSTFTLNLYLKNKQPIFLLLLFLMVIFICDNVIVYMTEFINSF ATEYNQTFMTAPFLKTIIFICCNFAYLAIINTISGRPFKNYQFVWLFLIGLWMLAIPFSQ NSALKVWLYYLPNQLFLIYLGCYALYQLRIDPLSALAKKYLRFIGWLSIGFGVAILLEDT FVIFNIDQYSDIVFKINNRNVSEDIYTIILSIAIIYFCNRDFPLSVLEKDAAKLEENQSD EPVLLAPFCDAYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNK RAEVFVSYQLFSQQQTEHLAR >gi|307679256|gb|GL456471.1| GENE 98 96466 - 96783 403 105 aa, chain - ## HITS:1 COG:no KEGG:EF0730 NR:ns ## KEGG: EF0730 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 105 1 105 105 179 100.0 2e-44 MEYVTTLEELEEKITDNRLQAVFLTAKNCSVCTVDKPIVEKIATKYEFPTYIAEADKSPE IIGQLNAFSAPTIILYYEGKEIHRQAKIINFQEIEKRVRQVQENS >gi|307679256|gb|GL456471.1| GENE 99 96959 - 97087 219 42 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227517695|ref|ZP_03947744.1| 30S ribosomal protein S9 [Enterococcus faecalis TX0104] # 1 42 1 42 42 89 100 1e-16 MNEKEKMLELIKKKQGGGRSKKMETPKNDRKNMRKGPKIFNK >gi|307679256|gb|GL456471.1| GENE 100 97088 - 98461 1650 457 aa, chain - ## HITS:1 COG:BH0687 KEGG:ns NR:ns ## COG: BH0687 COG2265 # Protein_GI_number: 15613250 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Bacillus halodurans # 5 452 7 454 458 485 54.0 1e-137 MKNYPVKKNDVIEVEIIDLTHEGLGVAKVDHYPLFIENALPGEKLEIKVLKTGKSFGYGK VLTVLKSSEQRVPVKDENFTKVGISPLQHLAYGAQLSFKTQQVENVMQRVAKLPEVPVLP TIGMNDPWHYRNKAQIPVRKIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDI MRKYSVKPYNESDNTGNLRHIVVRRGYHTGEMMVVLITRTPKLFPISKIVPDILEAIPEV VSIVQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKV KEYAALTGNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATF TAGLAEELLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARD IALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTKAVD >gi|307679256|gb|GL456471.1| GENE 101 98661 - 99749 1309 362 aa, chain - ## HITS:1 COG:SPy0752 KEGG:ns NR:ns ## COG: SPy0752 COG1597 # Protein_GI_number: 15674801 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Streptococcus pyogenes M1 GAS # 3 348 6 337 340 407 61.0 1e-113 MKKARVIYNPTSGKELIKKNLADILSILEECGYEASAFATTPEENSARNEAHRAARAGFD LLVAAGGDGTINEVVNGIAPLKRRPKMAIIPAGTTNDYARALKIPRDNIVKAAEVIKKNQ TVKMDIGQAGKNYFINIAAGGHLTELTYEVPSELKSIFGYLAYLAKGAEMLPRVKPIKMR MTYDEGVYEGNASMFFLGLTNSVGGFEQIVPDAKLDDGKFSLIIVKTANIFEILHLVALM LNGGKHVEDHRLIYTKTSYLHAETLEKNNKMMINLDGEYGGDAPMTFKNMHQHIEIFANG DALPSNAIMGSVLTGSDEIVVESEDEEEEAYNEASKEFVKEVERLTDEDIDGDGKIAEKE KH >gi|307679256|gb|GL456471.1| GENE 102 99768 - 101198 1730 476 aa, chain - ## HITS:1 COG:lin1866 KEGG:ns NR:ns ## COG: lin1866 COG0064 # Protein_GI_number: 16800932 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) # Organism: Listeria innocua # 1 476 1 476 476 725 77.0 0 MNFETVIGLEVHVELKTNSKIFSSAPAHFGAEPNSNTNVVDWSYPGVLPVMNKGALEFGM KAALALNCEISKETHFDRKNYFYPDNPKAYQISQFDQPIGHDGWIEIEVEGKKKKIRIER VHLEEDAGKNIHGTDGYSYVDLNRQGTPLIEIVSEADMRSPEEAYAYLEALRSIIQFTEV SDVKMEEGSMRCDANISLRPYGQEEFGTKAELKNLNSMNFVKKGLAYEEKRQAKVLLSGG EIQQETRRFDEATSTTLLMRVKEGSSDYRYFPEPDVPRFSIDDEWIEKVRASLPEMPASR RARYISELGLPEYDAMVLTLTKEMSDFFEATLANGADAKQASNWLMGEVSAYLNSEKVEL ADTKLTPENLAGMITLINDGTISSKIAKKVFKELIENGGDAKEVVEAKGLVQLSDPAQLL PMINEVLDNNQQSIDDFKNGKDRAVGFLVGQIMKATRGQANPGVVNKLLQEELSKR >gi|307679256|gb|GL456471.1| GENE 103 101198 - 102667 399 489 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 [Phaeobacter gallaeciensis BS107] # 1 472 1 452 468 158 28 2e-37 MEKLYDKSLTELHDLLVSKEITAVDLTEETLNRIQDTEEQLGSFITVSEEKAMALAKAID LKGITESNPLAGIPIGIKDNIVTKDILTTAGSKMLHNFDPIYDATVMDKVYQADMIPVGK LNMDEFAMGGSTETSYFKKTKNAWDQTKVPGGSSGGSASAVAAGQVPVSLGSDTGGSIRQ PAAFNGIVGLKPTYGRVSRFGLIAFASSLDQIGPLTRNVKDNALALNAISGYDEKDGTSA GVSVPDFTADLTGDIKGMKIALPKEYLGEGVQPDVREAVLKAAETFKSLGATVEEVSLPH SKYGVAVYYIIASSEASSNLQRFDGIRYGYRSDNVQNLEDVYVNSRSEGFGTEVKRRIML GTFSLSAGYYDAHFKKAGQVRTLIKQDFENVFADYDLIIGPSTPTVAFGLGENINDPITM YMNDILTIPVNLAGLPGMSIPAGFSEGLPVGLQIIGKHFDEHTMYKAAYAFEQATDFHTK KPVILGGND >gi|307679256|gb|GL456471.1| GENE 104 102667 - 102972 438 101 aa, chain - ## HITS:1 COG:L0475 KEGG:ns NR:ns ## COG: L0475 COG0721 # Protein_GI_number: 15672144 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit # Organism: Lactococcus lactis # 3 97 4 98 101 108 64.0 3e-24 MAITEEQVKHVAKLSKLSFSEEELADFTNQLDKIIDMVELLEEVDTTGVPFTSNVNESIN VMREDVATPGMDRKELMRNVPESENGYIKVPAIMDNGEAGA >gi|307679256|gb|GL456471.1| GENE 105 103290 - 103400 169 36 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSVEAALGLMIGFATLVVTIIFGILALVLDNKNNRS >gi|307679256|gb|GL456471.1| GENE 106 103554 - 105584 2247 676 aa, chain - ## HITS:1 COG:lin1870 KEGG:ns NR:ns ## COG: lin1870 COG0272 # Protein_GI_number: 16800936 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Listeria innocua # 10 671 2 663 671 801 59.0 0 MEQQPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI TPDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGKPVAYCCELK IDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPISVEVRGECYMPK QSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMKAKTQ FEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFVLQDE LGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTVSRASLH NADFIQMKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEMPTHCPICHSELVHLD EEVALRCINPKCPAQIKEGLNHFVSRNAMNIDGLGPRVLAQMYDKGLVKDVADLYFLTEE QLMTLDKIKEKSANNIYTAIQGSKENSVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSR ATAEEIVALDSIGETIADSVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPF KDKTVVLTGKLTQYTREEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVS VWNEQEMVDALDASHF >gi|307679256|gb|GL456471.1| GENE 107 105710 - 107968 2345 752 aa, chain - ## HITS:1 COG:SPy1267 KEGG:ns NR:ns ## COG: SPy1267 COG0210 # Protein_GI_number: 15675225 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Streptococcus pyogenes M1 GAS # 7 751 4 771 772 886 59.0 0 MTQKHALVQGMNPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILA ITFTNKAAKEMKERVNKLLETGGEDVWVSTFHSMCVRILRRDVDQIGYNRNFTIIDPSEQ KTLMKRILNDLNIDSKKYDPRSILGTISNAKNELQTPEKVAEMQGSLYEEIVAKCYEAYQ KELRKNQCMDFDDLIMNTIRLFNEQPDTLAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAA RFKNLCVVGDADQSIYGWRGADMQNILDFEKDYPDASVILLEQNYRSTKNILAAANDVIK NNRNRREKELWTENIDGEKIVYYRGDTERDETQFIVSQIQKEMRENDRIYGDFAVLYRTN AQSRVVEEMLLKSNIPYTMVGGHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRG IGKSSIEKLRLFADTHGWALLEAAQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTIT ELVKETLQRSGYREALMAQNNLESQARLENLDEFLSVTQEFDKRFEAQNNDDPNGEETKL ADFLTDLALVSDLDNLEESSSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRAMLEESE LEEERRLAYVGITRAEEALFLTNAYSRTLYGRTQYNRPSRFLEEIEAERLMKQGAAANLQ KAPARTFDPKVFKPSASKPAYTQPATKSVSNKVASGGEKVSWQAGDKVQHKAWGVGTVVR VGGSAKDLELDIAFPEKGIKRLLAAFAPIEKI >gi|307679256|gb|GL456471.1| GENE 108 108133 - 109692 1391 519 aa, chain + ## HITS:1 COG:SP1157 KEGG:ns NR:ns ## COG: SP1157 COG0038 # Protein_GI_number: 15901022 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Streptococcus pneumoniae TIGR4 # 36 492 42 499 516 324 46.0 3e-88 MNNDVHEIKQLDGTRIGFILKGIVVGILVGFVVSLFRLGIEKIGEQVVHLYQTFHEKPFW MIPWFLFSLVLAYLLGRLIKSEPAIKGSGIPQVEGQLQSQLEIHWFPVLWKKFIGGILAI SPGLFLGREGPSIQLGAVVGQGYSQWRQSTKSEEKILISSGASAGLAAAFNAPIAGLLFV LEEVHHSFSPLVWLTSFSAAISANFVSLHFFGLQPVLYIGPVKSLPLEYYWTLVLLGVLL GLLGWIYQKTLLSLPKVYGKIKGLSSNYYGFVPFILILPIGYFFPHLLGGGNQIVLALGN QPATIWALVGLLVLRFVFSMVSYGSNLPGGIFLPILTLGAIIGTLYGSLLVQYVGMDPIF VKNFLIFSMAGYFTAIGKAPLTAIILVTEMVGNFSHLMSLGVVALVSYITIDSLGGKPIY ESLLERLVPSKVSNIRGHKTIIELPITAESSLDDTMVRDFVWPKQMLLTSIRRGESEILT HGDTVMHVGDVLIILTDEKLAYQVKKEIYQKTLPNDLVN >gi|307679256|gb|GL456471.1| GENE 109 109828 - 110580 677 250 aa, chain + ## HITS:1 COG:lin2431 KEGG:ns NR:ns ## COG: lin2431 COG1349 # Protein_GI_number: 16801493 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Listeria innocua # 1 250 1 250 250 221 48.0 8e-58 MLTEERHQKILQLLDQKSVVKSQELASLFNASESTIRRDLQELEDANLLERIHGGAKRIL NLGFEQNMTEKSIKNTHEKQKIASLAASCVQDDDMIYLDAGSTTLEMIPFLVGKQIHVVT NSVHHAAKLSDMEIPTIMLGGTLKLSTKAIIGATSMEQLQHFRFNKAFLGTNGAHLEFGL TTPDPEEAALKALAIHQAETAYVLLDHTKFNEVTFTKVEELESVTLLTDYCPAESLQGFQ QKTILMEANK >gi|307679256|gb|GL456471.1| GENE 110 110577 - 111494 959 305 aa, chain + ## HITS:1 COG:lin2430 KEGG:ns NR:ns ## COG: lin2430 COG1105 # Protein_GI_number: 16801492 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Listeria innocua # 1 304 1 304 307 367 63.0 1e-101 MIYTVTLNPSIDFIVHVDHLQIGDLNRMTNDFKLPGGKGINVSRILKRMETESTALGFLG GFTGSFIADWLKKEEIQTNFTPVSADTRINIKLKSDTETEINGLGPALTNEEIQELKQAV SRVQAGDIVVLSGSTPASLRKGFYEELIQIVKEKGAEFVIDTTGEDLMNALSQKPLLVKP NNHELAELYHTTFTSVEDILPYGHRLLEEGAQHVIISMAGDGALLFTTEGVYRSNVLKRP LKNSVGAGDSMIAGFIGNFSKTQDPLEAFKWGVACGSATAFSDDLASEDFIQELIHEVTI EKISE >gi|307679256|gb|GL456471.1| GENE 111 111518 - 113440 2519 640 aa, chain + ## HITS:1 COG:SPy0855_3 KEGG:ns NR:ns ## COG: SPy0855_3 COG1299 # Protein_GI_number: 15674888 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Streptococcus pyogenes M1 GAS # 299 634 2 358 360 422 65.0 1e-117 MNINDLLIKDVMIMDLQATDKKGAIDEMVQKLYDGGRISDIDTYKEGILKREAQTSTGLG DGIAMPHAKNSAVKEPTVLFAKSKKGVDYEALDGQPTYLFFMIAAPEGANDTHLQALAAL SRLLIDPEFVGKLKEAETPEAVQALFQAAEDQKEAEEKAEQEQTTPAPESNRKYIIAVTA CPTGIAHTYMAEDALKKKAKEMGVDIKVETNGSEGIKNRLTAEDIARADGVIVAADKKVE MNRFDGKKLVNRPVSDGIRKTEELINLAISGEAPTFHGSDSAASDQEDSAEGSIGSRIYK DLMNGVSHMLPFVIGGGIAIALSFMIDQFIGVPQDQLANLGNYNDVASWFNQIGGAAFGF MLPVLAGFIASSIGDRPGLVAGFAAGALANAGGAGFLGALIGGFLAGYVVVLLRKVFKGL PKSLDGIKTILFYPVFGLIITGLLMLVINIPMKAINDALNHFLLGLDGTNAALLGALLAG MMAIDLGGPVNKAAYVFGTATLASTVAEGGSVVMASVMAGGMVPPLAIFVATRLFKNKFT KDQQDAGLTNIVMGLSFVTEGAIPFAAADPLRVIPSFVVGSAFTGALVGAFGIKLLAPHG GIFVVFLLSNPLLYLLFILIGAIISGIVYGLLKKPVEVPA >gi|307679256|gb|GL456471.1| GENE 112 113477 - 114139 505 220 aa, chain - ## HITS:1 COG:no KEGG:EF0716 NR:ns ## KEGG: EF0716 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 220 1 220 220 402 99.0 1e-111 MDKNYSKIKYGLVVFGILCLTYNLWEFFTAKYSTKQGVTFVIECLLGIGLIFLPDLVNKF LKIIMPPTIVYFYWFFLFISVFLGTSLHMISIISFWDKILHFVSPMLLTAVGYGIAGFLL KKTKYADVSPWLFLLFGFAFAGLCGVFWEFWEFICDSLGNMNLQRYNMSNGQPFIGRAAL MDTMGDLFTNTLGAFVMGVYTYIRSKGNPEYLENYAMKRK >gi|307679256|gb|GL456471.1| GENE 113 114251 - 115534 2053 427 aa, chain - ## HITS:1 COG:SPy1896 KEGG:ns NR:ns ## COG: SPy1896 COG0544 # Protein_GI_number: 15675709 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) # Organism: Streptococcus pyogenes M1 GAS # 1 427 1 427 427 456 63.0 1e-128 MSAKWEKKGTNDGVLTFSIEQAVIEKGLTQAFNKVKKNLNVPGFRKGKVSRTVFNRMYGE EALYEDALNAVLPEAYEAAVLEAGIEPVAQPKIDVESMNKGEDWVITAEVTVKPEVKLGE YKNLTVSKQDREVTDEDVEARLKREQESQAELVIKEDAAAENGDTVVIDFEGFLGDEAFE GGKGENYSLELGSNSFIPGFEDQLVGKKAGEEVEVNVTFPEDYQAEDLAGKEAVFKVTVH EVKAKELPELDDEFAKDVDDSVESLDELKEKFRKELTEAKEAAAEEAKDEEAIRLAVENA EIVELPHVMVHDEVHRSMDEFLNNMQRQGISPEMYYQLTGSTEEDLHKQFEGEAETRTKT NLVIEAVAKAENIEVTQEDIDAEVKDLAEQYNMPEAQVRKVLNNDMLEHDIRMKRAVETI TETAVEK >gi|307679256|gb|GL456471.1| GENE 114 115888 - 118173 1757 761 aa, chain + ## HITS:1 COG:no KEGG:EF0714 NR:ns ## KEGG: EF0714 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 761 3 763 763 1281 99.0 0 MNKFVWGIFSCIISWLFLSLTQPLIAHSETLNPTTHASTFSETFTSVSTEQQTTQATDIV EQETEQTHASSENDEPMAPTPASVSVGNSTLKSTLSTGTYNQDIITLSYEYSVTLIGLAI NDRPIIAIQLPTEISSQLDNDTLKQQDFLTLLTGTVSYPGTATQDIHSSTNGVSLSYSST YHSVYLTFPSSTLVLLPGTKWSAAISFDVGALYKRGISIPPALNGKDYPIRGTFTDVGTG LGAINIIIGNNTKTGVISKAQLSLGNYPVPQVTPAKLTQPNHLDTTVTGTIQQVQDPNYN YSVQLTLNRHDGTTTPIVVKGISVDAAGNFSTSLASPLEYGDTLSTIVFARSKTSTDYIQ SSPSADQSVNWSIQPVTNVVANAGSTQLSGKASQVSNGTYQVKVQINGGSIYTTSLDSNG HFQFANLPTFQGGETVSLWVQGLSNRTGLPLLTSSTVSQTVAYSVPQLTVTQIIERKNAQ GLWEAANSVVSGQIIRFTLTTRLTNQPATWMNQQLRATVPKGLSQLSAATLTKQSAAGLS TPIAGLQLLTDSSTGLPYWSYHNSLPADNFTEANTQFTLQYTATVTEEWINQFLLFSSTV TGNDGGGTPITPITKEQSLPTKNGTLRFVQMPTTVSFKNLPFPSKRTIYSPSTISAPFLI ADGRVAKTPWHLLVRESQPMHSTSTNKTIQQAFIYRKNGSDFPLSSLATEVYQYTATDDN NVEIPWNQQNGLFLSVAPDLNLTVKESYTAELQWILSDTPL >gi|307679256|gb|GL456471.1| GENE 115 118228 - 118842 425 204 aa, chain + ## HITS:1 COG:no KEGG:EF0713 NR:ns ## KEGG: EF0713 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 183 1 183 245 294 99.0 1e-78 MKKIVRISSILFVATPLMLLNSPKVEAAQVASIQSNADITFALDNTVTPPVNPTNPSQPV TPNPADPHQPGTAGPLSIDYVSNIHFGSKQIQAGTAIYSAQLDQVQNSTGDLISVPNYVQ VTDKRGLNLGWKLSVKQSAQFATSDSTPAVLDNASLTFLAATPNSTQLLSLAPLTVPVTL DPTLVPPLLLWRLPLFQQEWALGH >gi|307679256|gb|GL456471.1| GENE 116 118824 - 118967 105 47 aa, chain + ## HITS:1 COG:no KEGG:EF0713 NR:ns ## KEGG: EF0713 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 47 199 245 245 78 100.0 1e-13 MGTWTLAFGSGATAAQGIQLTVPATTKKVAAKQYKTTLTWILDDTPL >gi|307679256|gb|GL456471.1| GENE 117 119048 - 120082 1018 344 aa, chain + ## HITS:1 COG:no KEGG:EF0711 NR:ns ## KEGG: EF0711 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 31 344 1 314 314 579 98.0 1e-164 MNQQLFKWLHAVSVIIFLFFIGSYSVEASEITFSVKAILPDNQRTKETSYFDLRVAPNQT QKLQIELTNQTANDITVLASANAAITNDNGLADYSHAETKKDPSAPFTFNEIAQLPKEIQ LPKHSTKTVECQLILPEKPFNGYVLGGLYFEQKSDEQPAHSENGVAINNRFSYVVGVLLS ETDEPVQPELSLNEVKTDQANGRNRVLMNLQNKQAAMIKKLQVDASLYYEKEAKPRYENH QESLTMAPNTNFNYRIDLKEQPFVPGNYTVKIKVNDGYQDYSWEKHLVIQEKEAKKYNAT AVNLPPEKHTNFPWKLVSSITLVFLFILGSTIYYFKKKIRESQQ >gi|307679256|gb|GL456471.1| GENE 118 120127 - 121854 2201 575 aa, chain - ## HITS:1 COG:SP1176 KEGG:ns NR:ns ## COG: SP1176 COG1080 # Protein_GI_number: 15901041 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Streptococcus pneumoniae TIGR4 # 1 573 1 573 577 861 78.0 0 MSEMLKGIAASDGVAVAKAYLLVQPDLSFNKTSVEDTDAEATRLDDALAKSTEELQAIRD KAAQSLGEAEAQVFDAHLMVLSDPEMVGQIKQNIQDNKVNAEAALKEVTDMYIGMFEAMD DNAYMQERAADIRDVAKRILAHLLGVTLPNPSMINEEVIVVAHDLTPSDTAQLDRTYVKA FVTDIGGRTSHSAIMARSLEIPAIVGTKEITDKVKAGDILAVNGIIGDVIIDPTDAEKSE FEAEAKAYADQKAEWDKLKNAETVTADGKHVELAANIGTPKDLEGVHKNGGEAVGLYRTE FLYMDSSDFPTEEDQYQAYKAVLEGMEGKPVVVRTMDIGGDKELPYLTLPHEMNPFLGYR ALRISLSELGDGMFRTQMRALLRASVHGNLRIMFPMVATLKEFRAAKAIFEDEKQKLVNE GVEVSNDIQVGIMIEIPAAAVLADKFAKEVDFFSVGTNDLIQYTMAADRMNERVSYLYQP YNPSILRLIKNVIDAAHAEGKWAGMCGEMAGDQTAVPLLLGMGLDEFSMSATSILKTRSL MKRLDTTKMAELADRALKECDTMEEVVALVEEYTK >gi|307679256|gb|GL456471.1| GENE 119 121854 - 122120 437 88 aa, chain - ## HITS:1 COG:L120335 KEGG:ns NR:ns ## COG: L120335 COG1925 # Protein_GI_number: 15672099 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, HPr-related proteins # Organism: Lactococcus lactis # 1 88 1 88 88 115 76.0 3e-26 MEKKEFHIVAETGIHARPATLLVQTASKFNSDINLEYKGKSVNLKSIMGVMSLGVGQGSD VTITVDGADEAEGMAAIVETLQKEGLAE >gi|307679256|gb|GL456471.1| GENE 120 122291 - 122482 375 63 aa, chain - ## HITS:1 COG:no KEGG:EF0708 NR:ns ## KEGG: EF0708 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 63 1 63 63 108 100.0 8e-23 MAENPFVEKIASLKAGEISELIVEQNEFFQFRDAWISLPDRAEIVGEAGLNGRIIYRYQK EEE >gi|307679256|gb|GL456471.1| GENE 121 122785 - 125025 1682 746 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 57 708 124 788 815 652 52 0.0 MICQNCQQNEATIHLYANVNGQRKQLDYCQSCYQKLKNQANNSPQNMGQDPFGFGSLDDL YRSLSRQMQQGNPYEQQTPPTQFGDGGNGGQPPRGGAGAGQGLLGEYGINITEAARQGDI DPVVGRDQEIKRVIEILNRRTKNNPVLIGEPGVGKTAVVEGLAQKIVDGDVPQKLLDKEV IRLDVVSLVQGTGIRGQFEERMQKLIEEITEAENVILFIDEVHEIVGAGAAGDGNMDAGN ILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVQVDEPTVAETITILHGLQKRYE DYHHVKYTDEAINAAANLSNRYIQDRFLPDKAIDLLDESGSKMNLTIQLVDPKTIDKKLA EAEQQKQQASAEEDFEKAAYYRDQINKLQAMKEKQISDEETPVITEKDIEAIVEQKTGIP VGDLKEKEQTQLKNLAVDLKAHVVGQDDAVDKVAKAIRRNRVGLGKQNRPIGSFLFVGPT GVGKTELAKQLAFELFGSEDSMVRFDMSEYMEKHSVSKLIGSPPGYVGYDEAGQLTEKVR RNPYSLILLDEIEKAHPDVLHMFLQILDDGRLTDAQGRTVSFKDTIIIMTSNAGTGAVEA NVGFGATREGVTKSVLGQLNNFFTPEFLNRFDGIIEFKALSKENLMNIVSLMLEEVNSLL AKQKLHIEVPTEVKEKLVDLGYDPAMGARPLRRTIQEQIEDGIAEYYLDHPENHQLVAAL DNEGKIIVTGAQEVTKTETSTSDQAE >gi|307679256|gb|GL456471.1| GENE 122 125220 - 125534 419 104 aa, chain + ## HITS:1 COG:no KEGG:EF0705 NR:ns ## KEGG: EF0705 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 104 1 104 104 170 100.0 1e-41 MKLVNVTNSYKQLVNKQLENTDAYFVKVYSAGNTTAVYSEAAHHVEVLIMNKNRRIRPTE VKEILAKLLKRLPKEAYDPDEISIIELNHVTEVSVPLKVSLMEN >gi|307679256|gb|GL456471.1| GENE 123 125577 - 126608 1095 343 aa, chain - ## HITS:1 COG:no KEGG:EF0704 NR:ns ## KEGG: EF0704 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 343 14 356 356 589 99.0 1e-167 MIILMGCQPDQRTEKMKESTEAEAVQVTSGASAATNATSVKQEEQTNTNDQPKESAAKVS YERNGHTFEVDAVSGATVEANNGQSGISPEEKAQKMYWSGRPEIGEVQGDYYHHEVVFDG GYTALIDVVVKDQQIQLVEFDERGPKNYYSEEWAGVTKRLSGYANFQANNARTDQSLVTV VNTMTFLENQMVAENRLDGAFQTAKGQSNSANNGYLPAARALAKEIKEPSKEHYTSLTED FGEGLSGRLTVITLKDSGKITDLRYDEYFADTEEEIKDAKLKAYSRQSKYFSKDYAQKSG ENFKKEVDDLRKKAIEENKLVSPTNEEAWSENYQSLVKKITSQ >gi|307679256|gb|GL456471.1| GENE 124 126714 - 127361 737 215 aa, chain - ## HITS:1 COG:L163025 KEGG:ns NR:ns ## COG: L163025 COG2323 # Protein_GI_number: 15674091 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 1 209 1 209 211 319 80.0 2e-87 MQFYSPIIIKFALGIICLIVQINLMGKGNLAPTSAMDQVQNYVLGGIIGGVIYNDSITVL QFVLVLILWTLLVLILKFAKEHNRYVKQIVDGKPITLIKDGQVVVKECLKNGISANDLMF KLRANGIYEVQLVKRAVLEQNGQLTIVEYGDESIRYPIIVDGQANMDVLELIKKDEHWLL TQIQEQGFQRLQEIYLGEYLSGQLSLSPYEEKTIS >gi|307679256|gb|GL456471.1| GENE 125 127377 - 127820 452 147 aa, chain - ## HITS:1 COG:no KEGG:EF0702 NR:ns ## KEGG: EF0702 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 147 1 147 147 232 100.0 4e-60 MNFYGIEYLKSQSNLNDYLKYFFIFALLIGLVIVFSFYVRHQIQTKYRELSIIIFLSLLF VLGVQYSNYQLNQNQHSQSSQMVHFVEQVAQEKKVSPEKVYVNGTQLADGTIVKIDEVFY KMSLSTDQQSYTLQETYLLTPTIEIIK >gi|307679256|gb|GL456471.1| GENE 126 128304 - 128798 375 164 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229546538|ref|ZP_04435263.1| ## NR: gi|229546538|ref|ZP_04435263.1| hypothetical protein HMPREF0349_1756 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T8] hypothetical protein HMPREF9521_02931 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9509_03198 [Enterococcus faecalis TX0411] hypothetical protein HMPREF0349_1756 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T8] hypothetical protein HMPREF9509_03198 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9521_02931 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9496_02012 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9508_02504 [Enterococcus faecalis TX0312] # 1 164 1 164 164 285 100.0 7e-76 MASSKKDFVYSQNDYLNNYIQFADTKSAVFITVNGVLMGFLYTQIKDNMPFEFEKSKNLF LLASIGLLLVAYVFLFLVIFPRRSYRNGNGIVFWEDVTTYKDAESYKMKVSEIPQGSFEE VMIEQNYYLAKTATKKYKNLHWSFIFSIASYISVVVFSILNVLK >gi|307679256|gb|GL456471.1| GENE 127 128806 - 130074 651 422 aa, chain - ## HITS:1 COG:no KEGG:PSM_A2062 NR:ns ## KEGG: PSM_A2062 # Name: not_defined # Def: adenylate/guanylate cyclase # Organism: Pseudoalteromonas_SM9913 # Pathway: not_defined # 5 408 8 456 462 162 29.0 2e-38 MYNNYNNIERIFYKNLRKENLDNKLEKSVIHSRYMDSSQSIIVPENETLTIAKFPPNRFS EKIGTHPDFIDESLLPKTQYICSIFLDIKGSTRLALKYDLETVQKIKNAVLSTGIEIIRY FGGHIHRLQGDAIFAFTGHSKLLKSDAIIQAINAASVIQYMNQNILKKYFENVLGVSSLK IRIGIDFGDDDEVLWSKYGIDNINEVTVTSLHADLSSKLQNKASENSIMVGENVFSYLQL PDDLLSDIYIKGSSEEKDYYIMKHNSFNYKMKNFDWSKYLERIAHFESYEGDFQIKCYYL SENERRIPYYSEKALEKDTDIVYQIEASQSLLHKINSVEWTVSNSGIEASKEEELDYVVP KEAFTDEDNAVFRCKRHTAFNGLHYMICKIKAEGNITKNKYFSLYVNDNDLSKSYLKKAE LE >gi|307679256|gb|GL456471.1| GENE 128 130236 - 130430 137 64 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229546536|ref|ZP_04435261.1| ## NR: gi|229546536|ref|ZP_04435261.1| hypothetical protein HMPREF0349_1754 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T8] hypothetical protein HMPREF9498_01880 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9521_02929 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9509_03200 [Enterococcus faecalis TX0411] hypothetical protein HMPREF0349_1754 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T8] hypothetical protein HMPREF9509_03200 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9521_02929 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9498_01880 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9496_02014 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9508_02506 [Enterococcus faecalis TX0312] # 1 64 1 64 64 105 100.0 1e-21 MKESKIKTCKYPNCNKEVPSDKSLFCMEHSRSLKEKRNLVGTALGSVAILGVTTLANSII KKKI >gi|307679256|gb|GL456471.1| GENE 129 130411 - 131415 652 334 aa, chain - ## HITS:1 COG:no KEGG:LKI_07470 NR:ns ## KEGG: LKI_07470 # Name: not_defined # Def: hypothetical protein # Organism: L.kimchii # Pathway: not_defined # 1 328 1 327 334 321 52.0 2e-86 MKDFEIGLPKDASLLVNVTDKNLYNYDFTSYSLLPLQRIASKSIAVKIKNSLFSNISEMS LIENLSNQKETEYVARIPDFAKEKIDSGEWSFGVRKKTGETYAVIKDNLSGENKSFVTLD KKIVKELGVLPELSAIQGQLASISEQIEGLNQIIQRVEKGQYNDRYAGFFSSRQLVVEGL ASENESNKRELLISSIKIANETISKLMLSIHEDAALLIDSKTKSKDARRIDNLLQTSLGY LNSAVQLNLIAYTALGEKQSLFATLTNYHSFVKQVLMKENESGRTIAWLLDNAHVGDDGR IQELTNDLSTKIEVLIATYNNERTDVTENERIEN >gi|307679256|gb|GL456471.1| GENE 130 131462 - 133210 711 582 aa, chain - ## HITS:1 COG:Cj0008 KEGG:ns NR:ns ## COG: Cj0008 COG1479 # Protein_GI_number: 15791407 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Campylobacter jejuni # 4 581 3 580 583 304 35.0 3e-82 MERGFQPLITIKEAIENIDKNIYLLPAIQRKFVWSPEQIESLFDSIMRKYPINSLMLWQI TSDEIKNNYRFYSFLRKYKQRFGEMNEYYNSMGRTDNFFAVIDGQQRLNSLYIGLKGSYA VKLNHKRWVDNEDNFPPMKLYLNIKNTYKQETKIDKEYEFKFLRRDKVEKENKLGEKYWF EVGSILGLSDEKNRCSYLEKVGLENNEYSKDILNLLYETINEEKVLNYYLEDEQNLDKVL DIFIRTNDGGTKLTFSDLLMSFLTVHWSDARENFEELIREVNQFGDFSITIDFILKNMLV LYADDIKSRVKNFNEDVINKIKTNWERIRKSILNAFEMFYRLGFENRTFPAKNAAIPIVY YIYENKLEDEVIKNRFLDSNTQNANSQLMKKWLLLVFLKRIFGGQSDSILREIRKIIDDS SSGVFPLKEIINSAKSNPTKNYSFDDAIIEGLFEVQCGSDDAFFVLSLFYPDLDYFNQNF DIDHIHPKSKFQNKTFMENHFSKEEIERIGNNWNKIGNLQLLNKEKNILKKDKSLSEWME INHLNNSFLFIDEDIKLDIENFELFYENRVAKMKQDLKELVK >gi|307679256|gb|GL456471.1| GENE 131 134129 - 134425 292 98 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229546533|ref|ZP_04435258.1| ## NR: gi|229546533|ref|ZP_04435258.1| hypothetical protein HMPREF0349_1751 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T8] hypothetical protein HMPREF9521_02926 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9509_03203 [Enterococcus faecalis TX0411] hypothetical protein HMPREF0349_1751 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T8] hypothetical protein HMPREF9509_03203 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9521_02926 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9496_02017 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9508_02509 [Enterococcus faecalis TX0312] # 1 98 1 98 98 168 100.0 1e-40 MNTHKMQFGWIIEAPKYLSILTNQDGLVAIVSEYTTFGDNQSLLITLSETSAKVAVTPHY ISSLTISTDKKIKISTSPFYEQQIVEIEKMNSDGQIID >gi|307679256|gb|GL456471.1| GENE 132 134613 - 135353 134 246 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256854436|ref|ZP_05559800.1| ## NR: gi|256854436|ref|ZP_05559800.1| predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis T8] hypothetical protein EF62_1077 [Enterococcus faecalis 62] # 1 246 1 246 246 472 100.0 1e-131 MSKLYSNHSHLSKVLKHSALPILITKEFDFFRCVEFNQNFYEKTASELFHGNLRDSNSSN RYSQLFPNQKLSYWSDTPDTSRKEILKHGSSKNIVTFWAYDDLTSTFPTLENEEPLIIID GIQFGFEDILEKCDNNIPLSSEDNILITKINHAKPDCIAYKSMVTGTTNFLFFEKVFKKL AIKEVRLKMGELKSNDSNRIICAATSDYLPILESYGECFTPIAQTKMNENYLKSAEYKSR SKIYNH >gi|307679256|gb|GL456471.1| GENE 133 135462 - 136310 471 282 aa, chain - ## HITS:1 COG:L34517 KEGG:ns NR:ns ## COG: L34517 COG0582 # Protein_GI_number: 15672627 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Lactococcus lactis # 1 282 2 312 312 94 25.0 3e-19 MNWEDIILEFCMDITVRGFSKITIKNYKSKLRNTANFFKSINVEPSQIEKKQIKSWIIDM QEKEMQASTINVSVSRLKKLFDYMLIEKYIDYNPFVDIERLKEQRKVIYPLNDYEIKQML TVAKKHPYKHIAQRNVVILMLMIECGLRISEVCEIRDEDIMNNQIIIRKSKNNKDRAVAV SPILKKEIIKYQRIKKRKFGLLEGNPFIVSNLGKKLNEKSIWQIMQEIKKQIDIRDCVRF SGHTLRHTYASMQLRNGLDIYTLSSEDFIEKSIKTSTLMNLR >gi|307679256|gb|GL456471.1| GENE 134 136445 - 138019 1858 524 aa, chain - ## HITS:1 COG:SP0439 KEGG:ns NR:ns ## COG: SP0439 COG4108 # Protein_GI_number: 15900357 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptide chain release factor RF-3 # Organism: Streptococcus pneumoniae TIGR4 # 3 524 1 514 514 798 76.0 0 MTINQKEAVDSRRTFAIISHPDAGKTTITEQLLLFGGAIRQAGTVKGKKTGNFAKSDWME IEKQRGISVTSSVMQFDYQDKRINILDTPGHEDFSEDTYRTLMAVDSAVMVIDSAKGIEA QTKKLFQVVKKRGIPIFTFINKLDRDGREPLELLEELEELLDIESYPMNWPIGMGKGLEG LYDIYNERVELYRPENNGGERFIPLKDGDIPSDLPLHNNSVYQQVLEDVELLVEAGDEFS EEKIARGDQTPVFFGSALTNFGVQTFLETFLQFAPAPHAHKTEEGGEVSPYEKEFSGFVF KIQANMNPAHRDRIAFVRICSGVFERGMDVTLGRTGKKVKLSNVTQFMADARENVTEAVA GDIIGVYDTGNYQIGDTLYEGKMNVQYEELPSFTPELFMKVTAKNVMKQKSFHKGIYQLV QEGAIQLYKTYLTEEYIIGAVGQLQFEVFQYRMSNEYNAEVVMTPMGSKIARWINPEDLD ERMSSSRNILARDRFDQPLFLFENQFAERWFADKYPDVELKSLM >gi|307679256|gb|GL456471.1| GENE 135 138193 - 139572 1655 459 aa, chain - ## HITS:1 COG:L64811 KEGG:ns NR:ns ## COG: L64811 COG1253 # Protein_GI_number: 15673796 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Lactococcus lactis # 1 443 1 442 449 465 57.0 1e-131 MNNADPESQSLIAQLLLLVVLTFINAFLAAAEIAVVSVNKNRVEQKAEDGDAKAQKLLKV LQDPNNFLSTIQVGITLVNILSGASLAETLSSRLAPVLGGGAAAKSLASIIILALLTYVS IVFGELYPKRIAMNKSEEVAQLTSGAVRFLGVIARPFVWLLSASTDLLSKITPMTFDDAD SKMTRDEMRYMLETEGVLENEELEMLQGVFSLDTKVAREVMVPRTDAFMVDIQDDVQENI NLILGENYSRIPVYSEDKDKIVGILHTKTLLKAARNLGFENIELGAIIQEPLFVPETIFI DDLLYELKRTQNQMAILLDEYGGVVGLATLEDLLEEIVGEIDDETDEVENLYTQVADNEY LVQGRMLIDEFNEVFETDLHMSDVDTMAGYLITALGTIPDEGEKPSFEVGNIKLTAEEME GTRLLVLRVHFYDEETVDEEPEENRRFFRKEMEDDEPRR >gi|307679256|gb|GL456471.1| GENE 136 139747 - 140892 1304 381 aa, chain - ## HITS:1 COG:lin0908 KEGG:ns NR:ns ## COG: lin0908 COG0628 # Protein_GI_number: 16799980 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Listeria innocua # 3 362 4 363 378 306 47.0 4e-83 MINRFKESKLFFWSVELLVVAMLLFIASKINFLFAPIGTFFSTLFAPVLVAGFLYYLLNP VVNLLMKTKMKRIYAVLLVFLLLIIALVLILLTIIPKLADQLASLASSMPDFFKQVETWI YEIAELPIFKQIDLTSYIEKMDISYANIIQQFLSSLSSSLGSIVSTVASTTIVLVTAPFI LFYMLKDGDKLVPAIQRFLPEKRKDDIVDLLGQLNQTLSSYISGQAIECLFVGTFTIIGY SLLGVRYAFLFGVIAGFTNLIPYLGPYLGLAPAVLVTIFNEPVKAALCCLVVLVVQQLDG NIIYPNVIGKSLKIHPLTIILILLVAGNLAGLLGIFLGVPFYAICRTIIYYVIDMVKAGR SEKVTNAVLLGNETNTKENNG >gi|307679256|gb|GL456471.1| GENE 137 141037 - 141468 539 143 aa, chain + ## HITS:1 COG:SA0906 KEGG:ns NR:ns ## COG: SA0906 COG0454 # Protein_GI_number: 15926640 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Staphylococcus aureus N315 # 16 143 13 140 144 123 46.0 1e-28 MHVAQTKDTMSDLYLDAVRLRQRVFVAEQGVPEEMEIDEYEAHCIHFVLYTDHVAVATCR LLPLENGVMKLQRMAVEKAYRGADYGRMIMEAAENFAKEQGYHKITLGAQVTAVGFYERL GYQKTGAPFMDAGIEHYEMNKEL >gi|307679256|gb|GL456471.1| GENE 138 141556 - 142089 398 177 aa, chain - ## HITS:1 COG:L196206 KEGG:ns NR:ns ## COG: L196206 COG3557 # Protein_GI_number: 15672951 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Uncharacterized domain/protein associated with RNAses G and E # Organism: Lactococcus lactis # 1 176 1 176 176 289 82.0 2e-78 MGIPKEGEFVTIQSYKHDGHLHRTWRDTMVLKTSEYSLIGVNDHTLVTESDGRRWVTREP AIVYFHKKYWFNIIAMIREKGVSYYCNLASPYVLDDEALKYIDYDLDIKVFPDGEKRLLD VDEYEFHSKLMDYPEDIDFILKENVKTLVDWINNEKGPFSPEYVDIWYQRYQQLSKK >gi|307679256|gb|GL456471.1| GENE 139 142278 - 143255 1039 325 aa, chain - ## HITS:1 COG:SA1994 KEGG:ns NR:ns ## COG: SA1994 COG3684 # Protein_GI_number: 15927772 # Func_class: G Carbohydrate transport and metabolism # Function: Tagatose-1,6-bisphosphate aldolase # Organism: Staphylococcus aureus N315 # 5 319 4 321 326 373 61.0 1e-103 MKKISEQKRKHLENLVDDQGIIGALAIDQRGALKRMMGKYKEVTAQEISDFKVLVSRCLT PETSAILLDPEYGLAAAENRAQTSGLLLAYEKTGYDASTPGRLPDSLDVWSVKRLKEAGA DACKFLLYYDVDESEAINERKKAYIERIGSECLAEEIPFFLEIVSYDANNSDSASKEYAK VKPHKVIEAMKEFSKDRYNVDVLKVEVPVNMNFVEGFGTESLYSQDEAQAFFNMQSEATQ LPFIFLSAGVSATMFQETLKFAKKAGSSFNGVLCGRATWADGVLPFVQQGSEAAVAWLET TGKTNVDELNQVLRESAVSVFEKIQ >gi|307679256|gb|GL456471.1| GENE 140 143252 - 143713 625 153 aa, chain - ## HITS:1 COG:hrsA_1 KEGG:ns NR:ns ## COG: hrsA_1 COG1762 # Protein_GI_number: 16128706 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Escherichia coli K12 # 11 149 34 173 183 84 29.0 1e-16 MAFIKENHIFLNQQLQTQEDVFHFLAKKSTELEVAQDAQEVFDKLNEREQEGTTGMMNGF AIPHAKAATIQQAAIIIVTLDQGVEWQSLDNQLTEFVIALFIPDAEAGTTHLKLLSSVAR LLLREEVTSGLKQASSPAEIATLLNNQLGEGTE >gi|307679256|gb|GL456471.1| GENE 141 143740 - 145158 1812 472 aa, chain - ## HITS:1 COG:STM3255_2 KEGG:ns NR:ns ## COG: STM3255_2 COG1299 # Protein_GI_number: 16766553 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Salmonella typhimurium LT2 # 132 456 1 324 350 396 64.0 1e-110 MATYQLIAATGCPTGIAHTYMAQEALEQAAKRKGITIKVETHGQIGIENELTPAEIQGAE AVIIAADKDVQAERFAGKRIIDVPVSVGIKEADRLIEEALAGKGSIAAENQAVDELEQET QISSGNVGHSIYKNLMNGVSHMLPFVVAGGILIALSFAIWGIYSFDPESSQYNATAAMLK SIGDASMGMMVPILSAYIAEGIAKRPGLVVGFVGGLIANTGGTGFLGGILSGFLAGYFIL LLQRVFKGLPKSLDGLKAIFLYPVIGVAVIGITMSLLADPMKAVNEGMMSFLASFQNSSP LVLGIIVGCMCAFDMGGPVNKAAYVTGTALLAQGNTSFMAGVSAACIAPPLITGFATLFF GKYFDTNERNAGLVNFILGSTHITEGAIPFAAKDPLKVLPIMMLGSSIAAVLTYMFGVQV PAPHGGFLVLPVVTHAVQWVLAILAGSLVGGLLLGFVQKSRIAKQEQSLSKK >gi|307679256|gb|GL456471.1| GENE 142 145163 - 146089 1051 308 aa, chain - ## HITS:1 COG:BH0827 KEGG:ns NR:ns ## COG: BH0827 COG1105 # Protein_GI_number: 15613390 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Bacillus halodurans # 3 303 2 299 306 216 40.0 5e-56 MTIYTCTLNLAIDLFIETEELVPFVVNRTKEDDIQANGKGVNVSLILKMLGIDNTALGVK AGFTGNYVEDYLKEKEITTDFIEVAGTTRINVFTKVTQDQKEYKLVNKGPKLSEEHVQRF LKKISELRKGDYLCVSGSLPQGVSPSILIEISRICFEKQVFLILDSSYEEILDCLPYQPF LLKPNEEELQEWFHTEVQTKDDYIFYGQELLKRGAKNILLSLGSEGALFMNNEKVLSGNS PTGMVVNTACSGDAMLGTFLAGWHQGLSLEKNLKRSIAAGSSTAFRKGLTDFSDVQELEQ QIKIQEEE >gi|307679256|gb|GL456471.1| GENE 143 146267 - 147013 548 248 aa, chain + ## HITS:1 COG:L47971 KEGG:ns NR:ns ## COG: L47971 COG1737 # Protein_GI_number: 15673967 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 5 246 4 241 244 139 36.0 4e-33 MEQKLSESEQYLWHFIETHILEIPDYSIVKLSERANVSTATIVRTMKKKGYEGFTSFKHH LKDKENQNINFSALEKVDRGIRTAILKNEEEVTRTINMIEIGNIEDAIQKIKASRRIIIF ARGFSELIAQEMMVKFQLAGKYCELHTDPEIIKNISKKLSKKDVALFVSLNGETQELVVA GKNCYDSEIGTILLTASKHSSLMKYIEIPFVGFKSEGSFFPDYEVRSRLPLSILARILLD AYALRTTT >gi|307679256|gb|GL456471.1| GENE 144 147073 - 147717 974 214 aa, chain - ## HITS:1 COG:SPy1726 KEGG:ns NR:ns ## COG: SPy1726 COG0220 # Protein_GI_number: 15675576 # Func_class: R General function prediction only # Function: Predicted S-adenosylmethionine-dependent methyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 211 1 211 211 296 66.0 2e-80 MRVRNRPGAAEYMAKYPQYVVEGPEKWQGKWQERFGNNHPIHIEIGSGKGRFIYEMAKAH PEINYIGIDMQLSILSIALDKLVAEPLPNLQLLRVDGEALTEYFAENEVDLIYLNFSDPW PKKKHEKRRLTYKNFLATDEIILKPNGEIHFKTDNQGLFEYSLSSFSKYGMIIERVWLDL HNSEFEGNIMTEYEEKFSSRGQRIYRVEARFVAK >gi|307679256|gb|GL456471.1| GENE 145 147790 - 148569 808 259 aa, chain - ## HITS:1 COG:L155396 KEGG:ns NR:ns ## COG: L155396 COG0510 # Protein_GI_number: 15672730 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted choline kinase involved in LPS biosynthesis # Organism: Lactococcus lactis # 5 255 2 252 257 201 37.0 2e-51 MEFQLDKDWRLQPIKGATGQTYMGIKETEKVFIKRNTSPLLAALSKEGLAPKMIWTKRTA NGDVLTAQEWLEGRLLHADEIGKRNDVIDVLYQLHHSNLLKDMLKKIGGEVCTPLTMLKE YKRQLPKELKRNSYLKEVITYLYNHLPEYPETSYVAVHGDVNHRNWLVSNNYLYLVDWDS VMVADPAVDLGMILSHYVPRSGWNQWLLSYGLIPNESTVQRIYWYGLFSFLQEIVRHHQE GERRAMTAEILQLKRMFSS >gi|307679256|gb|GL456471.1| GENE 146 148698 - 149909 982 403 aa, chain - ## HITS:1 COG:lin2317 KEGG:ns NR:ns ## COG: lin2317 COG4473 # Protein_GI_number: 16801381 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted ABC-type exoprotein transport system, permease component # Organism: Listeria innocua # 4 403 10 405 407 188 33.0 1e-47 MGEFFSQRLSRHFKKMSKYLRYILNDHFVLVCMFLLGGLGLYYSQLLKELPRDFVWGRPL ILLGWLLLIQVGKLATLTEEPDKFFLLPKEKQFAAYLKRALRYSLLLPIVVSFLGSGLLM PLIVVTTGWSFQTFFLFLVMLVCMIYTHLSLQSYGLYHLSSTTYRSWWFVWLISSLLIMT GAIYWTPWVGVIGGIILAVCLSSIWQNKMKKSFLDWEKMIQKEQNRMHRIYKFIQLFTDI PEVSSTVKRRKYLDPLLGVVKKTSENTYAYLFIRSFLRGSEYSGLLFRLILVGGVLLFFL QEFWIALVVALLFVYLIGFQLIPMYTQFDYMVMTQLYPISIEKKQAAIRRLISGALSVAA IIFGGIVCLRLGSLQNSLIILGALIVEVVIFTKMYVPMRLNKL >gi|307679256|gb|GL456471.1| GENE 147 149911 - 150648 262 245 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 2 232 8 239 309 105 30 1e-21 MSLTIEHLTGGYGHIPVLKDINFDVKSGEMVGLIGLNGAGKSTTIKNIIGLLTPQKGKIM IDGETLQQAPEEYRKKIGYIPETPSLYEELTLKEHIEVTALAYDIPLEEAFKRAEPLLKT FRLDNKLEWFPANFSKGMKQKVMVLCAFLIEPSLYIIDEPFLGLDPLAIHALLELMDTMR KQGAAILMSTHILATAEKYCDRFVVLHEGKLRANGTMAELRAEFNLPESSLDDIYLALTK EEKVG >gi|307679256|gb|GL456471.1| GENE 148 150862 - 151287 476 141 aa, chain + ## HITS:1 COG:lin2319 KEGG:ns NR:ns ## COG: lin2319 COG0537 # Protein_GI_number: 16801383 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Listeria innocua # 1 141 1 140 140 181 60.0 3e-46 MNDCIFCKIINGEIPSYKVYEDEKVYAFLDITQVTKGHTLMIPKQHVADIFEYNDVLASD VFARIPKVARALEKAFPEMEGLNILNNNKEVAYQSVFHSHVHLIPRYSKEDDFSIHFGNH QEDYSAEAMQEIAETIAKQVN >gi|307679256|gb|GL456471.1| GENE 149 151288 - 151632 339 114 aa, chain + ## HITS:1 COG:no KEGG:EF0686 NR:ns ## KEGG: EF0686 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 114 1 114 114 200 100.0 2e-50 MKKFIKGLFFGAAAGTIGGLLAAPRSGKETRQHLINELEDYRSLKNQVTNDWDQVQRNLA VVEENVPLATEFSKDLQQEITDFKFQAEPRIAQIKEQIAKITAELPDTQTNKQK Prediction of potential genes in microbial genomes Time: Tue Jul 5 20:52:02 2011 Seq name: gi|307679255|gb|GL456472.1| Enterococcus faecalis TX0411 genomic scaffold Scfld505, whole genome shotgun sequence Length of sequence - 95896 bp Number of predicted genes - 87, with homology - 85 Number of transcription units - 38, operones - 22 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 238 139 ## gi|315158700|gb|EFU02717.1| hypothetical protein HMPREF9508_01496 + Prom 240 - 299 4.0 2 2 Tu 1 . + CDS 380 - 1543 650 ## COG0582 Integrase - Term 1550 - 1618 -0.3 3 3 Op 1 11/0.000 - CDS 1620 - 3518 2263 ## COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division 4 3 Op 2 . - CDS 3538 - 4935 1703 ## COG0486 Predicted GTPase - Prom 5040 - 5099 6.9 - Term 5081 - 5146 16.5 5 4 Op 1 3/0.000 - CDS 5168 - 8473 4078 ## COG1404 Subtilisin-like serine proteases 6 4 Op 2 . - CDS 8430 - 9932 1582 ## COG1404 Subtilisin-like serine proteases - Prom 10060 - 10119 7.6 - Term 10491 - 10523 4.2 7 5 Op 1 . - CDS 10562 - 10735 109 ## gi|307268895|ref|ZP_07550259.1| hypothetical protein HMPREF9498_01025 8 5 Op 2 . - CDS 10720 - 11589 964 ## COG1767 Triphosphoribosyl-dephospho-CoA synthetase 9 5 Op 3 . - CDS 11596 - 12768 1282 ## COG0281 Malic enzyme - Term 12805 - 12849 8.2 10 6 Op 1 1/0.000 - CDS 12886 - 14283 1682 ## COG5016 Pyruvate/oxaloacetate carboxyltransferase 11 6 Op 2 7/0.000 - CDS 14276 - 14824 405 ## COG3697 Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) 12 6 Op 3 6/0.000 - CDS 14805 - 16337 2047 ## COG3051 Citrate lyase, alpha subunit 13 6 Op 4 6/0.000 - CDS 16340 - 17227 1175 ## COG2301 Citrate lyase beta subunit 14 6 Op 5 5/0.000 - CDS 17215 - 17523 435 ## COG3052 Citrate lyase, gamma subunit 15 6 Op 6 . - CDS 17529 - 18539 848 ## COG3053 Citrate lyase synthetase 16 6 Op 7 . - CDS 18554 - 18688 249 ## EF3323 hypothetical protein 17 6 Op 8 9/0.000 - CDS 18710 - 19825 1468 ## COG1883 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit 18 6 Op 9 . - CDS 19855 - 20256 602 ## COG0511 Biotin carboxyl carrier protein 19 6 Op 10 . - CDS 20240 - 20602 376 ## EF3326 hypothetical protein - Prom 20632 - 20691 4.0 + Prom 20795 - 20854 7.5 20 7 Op 1 1/0.000 + CDS 21007 - 22404 1623 ## COG2851 H+/citrate symporter + Term 22416 - 22460 4.8 + Prom 22441 - 22500 8.2 21 7 Op 2 . + CDS 22538 - 23233 880 ## COG1802 Transcriptional regulators + Term 23234 - 23291 7.4 - Term 23230 - 23271 5.5 22 8 Tu 1 . - CDS 23277 - 23999 647 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 24064 - 24123 8.4 - Term 24108 - 24167 5.0 23 9 Op 1 16/0.000 - CDS 24185 - 24961 1015 ## COG1847 Predicted RNA-binding protein 24 9 Op 2 22/0.000 - CDS 24976 - 25803 874 ## COG0706 Preprotein translocase subunit YidC 25 9 Op 3 . - CDS 25803 - 26165 341 ## COG0594 RNase P protein component - Prom 26251 - 26310 4.4 - Term 26265 - 26324 9.1 26 10 Tu 1 . - CDS 26363 - 26497 223 ## PROTEIN SUPPORTED gi|29377774|ref|NP_816928.1| 50S ribosomal protein L34 - Prom 26546 - 26605 7.3 27 11 Op 1 16/0.000 + CDS 27020 - 28363 1486 ## COG0593 ATPase involved in DNA replication initiation + Prom 28382 - 28441 4.1 28 11 Op 2 6/0.000 + CDS 28565 - 29695 1428 ## COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) + Term 29862 - 29903 -0.8 + Prom 30184 - 30243 10.2 29 11 Op 3 9/0.000 + CDS 30274 - 30519 286 ## COG2501 Uncharacterized conserved protein 30 11 Op 4 9/0.000 + CDS 30506 - 31633 989 ## COG1195 Recombinational DNA repair ATPase (RecF pathway) 31 11 Op 5 24/0.000 + CDS 31630 - 33579 2394 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 32 11 Op 6 . + CDS 33635 - 36136 3048 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit + Term 36137 - 36189 15.3 + Prom 36173 - 36232 7.9 33 12 Op 1 24/0.000 + CDS 36311 - 36613 510 ## PROTEIN SUPPORTED gi|29374668|ref|NP_813820.1| 30S ribosomal protein S6 34 12 Op 2 21/0.000 + CDS 36658 - 37224 636 ## COG0629 Single-stranded DNA-binding protein 35 12 Op 3 . + CDS 37250 - 37489 397 ## PROTEIN SUPPORTED gi|29374670|ref|NP_813822.1| 30S ribosomal protein S18 + Term 37507 - 37544 7.3 + Prom 37551 - 37610 3.4 36 13 Op 1 9/0.000 + CDS 37695 - 39671 785 ## PROTEIN SUPPORTED gi|162447066|ref|YP_001620198.1| bipartite protein: signaling protein and ribosomal protein L9 37 13 Op 2 16/0.000 + CDS 39668 - 40129 759 ## PROTEIN SUPPORTED gi|227518097|ref|ZP_03948146.1| 50S ribosomal protein L9 + Term 40146 - 40178 1.5 + Prom 40154 - 40213 8.2 38 14 Op 1 3/0.000 + CDS 40402 - 41769 1779 ## COG0305 Replicative DNA helicase + Term 41774 - 41806 2.5 + Prom 41809 - 41868 5.3 39 14 Op 2 . + CDS 41895 - 43298 1615 ## COG0104 Adenylosuccinate synthase + Term 43312 - 43366 6.1 + Prom 43341 - 43400 10.5 40 15 Op 1 . + CDS 43423 - 44292 979 ## COG1307 Uncharacterized protein conserved in bacteria 41 15 Op 2 . + CDS 44296 - 44520 86 ## gi|307296604|ref|ZP_07576424.1| conserved domain protein + Term 44698 - 44740 -0.5 - Term 44341 - 44395 1.1 42 16 Tu 1 . - CDS 44635 - 46266 1988 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 46300 - 46359 7.6 + Prom 46355 - 46414 9.6 43 17 Tu 1 . + CDS 46518 - 49403 2746 ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain + Term 49408 - 49458 13.3 + Prom 49418 - 49477 13.1 44 18 Tu 1 . + CDS 49606 - 50118 527 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB + Term 50151 - 50188 -0.7 + Prom 50214 - 50273 6.2 45 19 Op 1 13/0.000 + CDS 50353 - 51345 1310 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 46 19 Op 2 13/0.000 + CDS 51380 - 52183 1061 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 47 19 Op 3 4/0.000 + CDS 52206 - 53117 1324 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID + Term 53156 - 53199 9.3 + Prom 53190 - 53249 6.0 48 19 Op 4 . + CDS 53279 - 53656 430 ## COG4687 Uncharacterized protein conserved in bacteria + Term 53664 - 53714 8.2 + Prom 53813 - 53872 8.0 49 20 Tu 1 . + CDS 53904 - 54431 640 ## COG3247 Uncharacterized conserved protein + Term 54447 - 54484 6.0 - Term 54434 - 54471 6.0 50 21 Tu 1 . - CDS 54479 - 54682 246 ## EF0026 hypothetical protein - Prom 54841 - 54900 9.4 + Prom 54798 - 54857 8.4 51 22 Op 1 3/0.000 + CDS 54880 - 55650 832 ## COG1737 Transcriptional regulators + Prom 55682 - 55741 4.4 52 22 Op 2 3/0.000 + CDS 55799 - 57367 1607 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 53 22 Op 3 . + CDS 57391 - 58596 907 ## COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities + Prom 58602 - 58661 6.0 54 22 Op 4 . + CDS 58696 - 59076 445 ## COG0251 Putative translation initiation inhibitor, yjgF family + Term 59092 - 59141 13.4 + Prom 59112 - 59171 3.8 55 23 Tu 1 . + CDS 59268 - 61859 2199 ## COG2898 Uncharacterized conserved protein + Term 61866 - 61926 10.2 + Prom 61929 - 61988 13.3 56 24 Op 1 . + CDS 62168 - 62275 70 ## + Prom 62292 - 62351 3.8 57 24 Op 2 . + CDS 62410 - 62916 78 ## gi|229547100|ref|ZP_04435825.1| membrane protein + Term 62951 - 62993 0.7 - Term 63130 - 63162 -0.7 58 25 Tu 1 . - CDS 63185 - 65800 2526 ## COG4485 Predicted membrane protein - Term 66258 - 66297 3.1 59 26 Op 1 . - CDS 66345 - 66854 629 ## COG4283 Uncharacterized conserved protein 60 26 Op 2 . - CDS 66862 - 67329 514 ## EF0035 hypothetical protein + Prom 67094 - 67153 6.5 61 27 Tu 1 . + CDS 67385 - 68341 769 ## COG2378 Predicted transcriptional regulator + Term 68396 - 68440 8.3 - Term 68384 - 68429 12.5 62 28 Op 1 22/0.000 - CDS 68433 - 69680 1451 ## COG0014 Gamma-glutamyl phosphate reductase 63 28 Op 2 . - CDS 69673 - 70488 954 ## COG0263 Glutamate 5-kinase - Prom 70519 - 70578 8.5 + Prom 70465 - 70524 4.8 64 29 Tu 1 . + CDS 70604 - 70681 58 ## + Prom 70690 - 70749 4.3 65 30 Op 1 1/0.000 + CDS 70814 - 71293 570 ## COG0756 dUTPase 66 30 Op 2 2/0.000 + CDS 71372 - 72742 1414 ## COG1066 Predicted ATP-dependent serine protease 67 30 Op 3 . + CDS 72843 - 73988 1352 ## COG4956 Integral membrane protein (PIN domain superfamily) 68 30 Op 4 3/0.000 + CDS 74007 - 74480 511 ## COG0245 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 69 30 Op 5 4/0.000 + CDS 74533 - 75990 1716 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases + Term 76184 - 76237 14.0 + Prom 76181 - 76240 8.2 70 31 Op 1 4/0.000 + CDS 76260 - 76799 644 ## COG1045 Serine acetyltransferase 71 31 Op 2 8/0.000 + CDS 76792 - 78204 1536 ## COG0215 Cysteinyl-tRNA synthetase 72 31 Op 3 7/0.000 + CDS 78201 - 78599 345 ## PROTEIN SUPPORTED gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 73 31 Op 4 6/0.000 + CDS 78589 - 79446 570 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 74 31 Op 5 5/0.000 + CDS 79461 - 79991 579 ## COG3688 Predicted RNA-binding protein containing a PIN domain 75 31 Op 6 . + CDS 80077 - 80643 672 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog + Prom 80658 - 80717 4.2 76 32 Op 1 2/0.000 + CDS 80758 - 81003 340 ## COG4466 Uncharacterized protein conserved in bacteria + Term 81016 - 81065 12.1 + Prom 81090 - 81149 4.1 77 32 Op 2 . + CDS 81184 - 82035 857 ## COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase + Term 82043 - 82106 16.3 + Prom 82090 - 82149 5.4 78 33 Op 1 25/0.000 + CDS 82202 - 83155 1034 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin 79 33 Op 2 42/0.000 + CDS 83181 - 83873 231 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 + Prom 83947 - 84006 4.8 80 33 Op 3 . + CDS 84035 - 84874 1078 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components + Term 84875 - 84910 5.3 + Prom 84933 - 84992 6.0 81 34 Tu 1 . + CDS 85018 - 85839 1088 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins + Term 85843 - 85899 14.3 + Prom 85931 - 85990 6.6 82 35 Tu 1 . + CDS 86050 - 87426 1825 ## COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) + Term 87441 - 87484 12.6 + Prom 87599 - 87658 10.5 83 36 Op 1 . + CDS 87867 - 91832 4374 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases + Term 91844 - 91880 2.0 + Prom 91860 - 91919 12.5 84 36 Op 2 . + CDS 91968 - 93647 2035 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Term 93648 - 93715 15.2 - Term 93643 - 93691 11.1 85 37 Op 1 . - CDS 93694 - 93918 349 ## EF0064 hypothetical protein 86 37 Op 2 . - CDS 93933 - 94919 1286 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases - Prom 94944 - 95003 5.2 + Prom 95109 - 95168 10.5 87 38 Tu 1 . + CDS 95319 - 95894 403 ## EUBREC_1256 hypothetical protein Predicted protein(s) >gi|307679255|gb|GL456472.1| GENE 1 2 - 238 139 78 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315158700|gb|EFU02717.1| ## NR: gi|315158700|gb|EFU02717.1| hypothetical protein HMPREF9508_01496 [Enterococcus faecalis TX0312] hypothetical protein HMPREF9513_00060 [Enterococcus faecalis TX0645] # 1 78 161 238 238 130 100.0 3e-29 LKIEELFINAIIEEFDNNILLLTSSIEEQLEEMIDEGIHSQVEDMNYPEEAVNEIIDNIN KLKQTISSIGKKYTKKTY >gi|307679255|gb|GL456472.1| GENE 2 380 - 1543 650 387 aa, chain + ## HITS:1 COG:L55605 KEGG:ns NR:ns ## COG: L55605 COG0582 # Protein_GI_number: 15673415 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Lactococcus lactis # 4 386 3 358 359 180 32.0 4e-45 MATIQQYKKSDGTTAWLYKVYMGKDPVTGKEKRTTRRGFKTKKEASLDLARFQLEIESTG ISQHSIKTFSELYDLWMNQHVKNIRNTTEQRIKNHFTNQILPSFGKMRLEVITPAICQKI LTEWSTKYQSYQKIKSYTSQVFNYGILIGVIKTNPMERTITPKSNHNFNEIEEEFYTKEE LRQFFDCLQELKDDRALAFFRLAAYTGARKGEILGLTWKDIDFDKKTVQFNKTLVELSDG SLCVNPTKTESSKRTITIDDGTLTILKKWKRTVIKKNLSRGIRIDNMDDVPVISTIKANK KRDFLYKGYPNHVMSKIARKFPDMKIIKVHGFRKTHATLLFEAGAQVKDVQDRLGHSSSK TTMDIYIQVSKNRQEETVELFDSYMNA >gi|307679255|gb|GL456472.1| GENE 3 1620 - 3518 2263 632 aa, chain - ## HITS:1 COG:lin2942 KEGG:ns NR:ns ## COG: lin2942 COG0445 # Protein_GI_number: 16802001 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: NAD/FAD-utilizing enzyme apparently involved in cell division # Organism: Listeria innocua # 1 630 1 627 629 907 73.0 0 MNQYQAESYDVIVVGAGHAGSEAALAAARMGVKTLLLTINLDMVAFMPCNPSVGGPAKGV VVREIDALGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYATEMKHTIEKEENL TLRQGIVEELIVEDGVCCGVVTSTGAAYRSQAVVITAGTALRGEIIIGELKYSSGPNNSQ PSVGLANHLKELGLEIDRFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSYSTPDSAYNQ NQEPCWLTYTNETTHEIIQKNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFL EPEGLNTEEVYVQGLSTSLPEDVQTEMLHSIEGLEKVEMMRTGYAIEYDVVVPHQLRPTL ETKVIENLYTAGQTNGTSGYEEAAGQGLMAGINATLKIQGKEPLVLKRSDGYIGVMIDDL VTKGTNEPYRLLTSRAEYRLILRHDNADLRLTEMGHEIGLVKEEQYAAYLVKKAAVEAEI ARLGKHRIKPTKEVQAFLETKGAAGLKDGILARDFLKRPEISYQEVAQFIPAPEEALDPK VIEQVEIQIKYEGYIKKAMEKVEKLKRMEAKRIPENIDYQAINGLATEAKQKLQKIQPET IAQASRISGVNPADISILMVYIEQGKIAKVQG >gi|307679255|gb|GL456472.1| GENE 4 3538 - 4935 1703 465 aa, chain - ## HITS:1 COG:lin2943 KEGG:ns NR:ns ## COG: lin2943 COG0486 # Protein_GI_number: 16802002 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Listeria innocua # 6 465 1 457 457 606 71.0 1e-173 MQSATMEFDTIAAISTPPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKVPTHTIHYGH IVDPQNDQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLREGARMAEPGE FTKRAFLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILNTLAQV EVNIDYPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGRPNVGK SSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERS RKALADSDLILLVLNQSEELTEEDRQLLEATKGLKRVILLNKMDLPTKLDPNELQELVPA EEILSVSVLSNTGLDQLEAKIADLFFGGQTGEKDATYISNTRHIALLDQAALSLQEVING IEAGMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK >gi|307679255|gb|GL456472.1| GENE 5 5168 - 8473 4078 1101 aa, chain - ## HITS:1 COG:BH2080 KEGG:ns NR:ns ## COG: BH2080 COG1404 # Protein_GI_number: 15614643 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus halodurans # 105 431 741 1047 1052 105 30.0 5e-22 MGQERLQLPFGGGVKGTADANATVEIRNAGGTVIGTGTADGTGAFTVTIPAGEAGANETL TAVAKNASGTESTPTTFQTPADPNTPVATPIVETVTGSTTKGYEVKGTAEVGTTIEVRDA AGTVLDTATTGTDGKYTVTLDSGTATANQTLSVVAKNASGTESQPATATTPADVTAPTVD NITGNSGSGYEITGTADPNTTIEVRDPSGAVIGTGTSDANGDFTVTLPTGTTNPGDTLTV IGKDNAGNESQPTEVLVPADATVTAPTVTGVTGNSVAGYQVTGTADPNATIEIRDADGNV IATGTADGTGSFAVNLPAGTASANETLTALAKDPDGNTSTPTTFQTPADEVVAPPSVDKV TGNTTQGYQVTGTAELGTTIEVRATDGTVLGTATTGPTGQYTVTLASGKATAKQTVNVVA KNDTGLESQPTTAMTPADVTTPTIGDITGDSTTGYEITGTADPNTTIEVRNPDGTIIGTT TTDDQGNFTVDLPAGAANPGDTLTVVGKDGDGNESQPTEVTVPEDATVAAPTVTTVTGTT ATGYQVTGTAEPNVTIEIHNEAGLVIATGTTDGAGAFTITLPTGTATANEALTAIAKDAA GKESNPTAFKTPADPDAPVATPTVDKITGSTTNGYQVVGAAEVGTTVEVRDADGTVLGMA TTGTDGKYTVTLEPGKASANETITVVAKNATGKESQPATATTPADLATPTIDSITGNSGK GYEITGTAEPKTTIDVRDADGTIIAATTANETGQYTVTLPAGVVTPGETITIISKDGAGN ESQPATAVIPADVVLAAPTITKVEGNKANGYTVTGTADLNVTVQFYNSSEQLLASGNTTT GGTFSVHIAAGLATEKETLTALTTDTQGNVSPKTTFMTPADITGEPEIKIAAPTVSSVLG TSKAGYLIKGTAEPNRIIQISNRLLRSVIAVGATDAEGNFAIQLTAGQATAQQSLLATAT DGAGHYSTATTFMTPADPTNPGGGNGNTGGNNGNTGGNTGNNGATGGNNGNGSNTGSNPN GGSGLGTTGSGLGSLGNGLGTNGSGYNPKLSTISYGTGNHGKTGYLPSTGEKESSAVTTS LFGAFVALLASMGIIKRKRKN >gi|307679255|gb|GL456472.1| GENE 6 8430 - 9932 1582 500 aa, chain - ## HITS:1 COG:BH2080 KEGG:ns NR:ns ## COG: BH2080 COG1404 # Protein_GI_number: 15614643 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus halodurans # 355 496 893 1023 1052 62 35.0 2e-09 MKKKIVEDFNRKSQHKKWTKRKMLNLAISSGLLFTSLAIPVSIAVTSGTISASAAVLDIE LLSNVTSNNDSGTSTSNRWTAANQNQPVNFTVSGGALADASAVFSGQKQAVLVVPPELRG NVAAAGSAAINTNVTIDLSKVTFLTAVLNAANDLTNVITQITSGALGNLTGVDIDLTEVN RQLELVNNIENLGAASFTAPETLAADGSYISAPISDGLGLVLAQNVSNILQDLNAAVQAL EAKGTSIPSNLVATAINAALLPVKGTVNVAVSGALPLLAVGGSGVNELVDASLLGATTVT LPTTVSTPQNLSNNLDARFVGTVVQTDLLDVNLLATADGVSNIYFAAGTTSEVTAPTVTG VTGNSTAGYEVKGTADANVTVEIRNAGGTVIGTGTADGTGAFTVTIPAGEAGANETLTAV AKNASGTESTPTTFQTPADETTVTAPTITGVTGNSTAGYEVKGTADANATVEIRNAGGAV IGTGTADGTGAFTVTIRGGG >gi|307679255|gb|GL456472.1| GENE 7 10562 - 10735 109 57 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|307268895|ref|ZP_07550259.1| ## NR: gi|307268895|ref|ZP_07550259.1| hypothetical protein HMPREF9498_01025 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9498_01025 [Enterococcus faecalis TX4248] # 1 57 1 57 57 92 98.0 1e-17 MADPLIKKIVTTLIWSVILTLYAYGKVSREFKKAIDKYHETQYILLRNHSYQSIQIR >gi|307679255|gb|GL456472.1| GENE 8 10720 - 11589 964 289 aa, chain - ## HITS:1 COG:VC0801 KEGG:ns NR:ns ## COG: VC0801 COG1767 # Protein_GI_number: 15640819 # Func_class: H Coenzyme transport and metabolism # Function: Triphosphoribosyl-dephospho-CoA synthetase # Organism: Vibrio cholerae # 16 284 39 308 313 155 37.0 7e-38 MTKQARSKLAQQAQLALLYEVTCLNKPGLVDPVDAGAHQDMDVFTFLESSVVLTPYFETF VQAGTELRHLPIEATFRAIRQVGLEAERAMFEATEGINTHKGAIFSLGIFLAVCGRLMIW ETPCTLQLFQQTLQTMTQDLLADFENLATNELEKLTWGERLFVQHGLTGIRGEAQQGYPA VFEQGVPYYQKHQGTQQQKLIDTLLYLSLYVEDTNLIKRSQNVQIFEIYQPLIQEYFALG GTQTLRGTLCLERLNHLFKEKNWSIGGSADALILVVFLDKLMKLNWLTP >gi|307679255|gb|GL456472.1| GENE 9 11596 - 12768 1282 390 aa, chain - ## HITS:1 COG:L3227 KEGG:ns NR:ns ## COG: L3227 COG0281 # Protein_GI_number: 15673168 # Func_class: C Energy production and conversion # Function: Malic enzyme # Organism: Lactococcus lactis # 2 380 4 380 380 380 54.0 1e-105 MLEEVLAIHQKNIGVLSLEATEAVLNHHDLAKMYTPGVAELSLMIAQNHELAREWTISGK LIAVITDGSAVLGLGNMGTQAGLPIVEGKALLYKNLAGVDAIPLALEQKSVDEMVQTIEN LQNSFAGIHLEDISAPKCFEIEEKLQQRLNIPVYHDDQEGTAIVVLAGLINAAKIKGKPL NELRVVINGVGASGVATAKLCIQAGITHLTLVDRQGVLREEDPTLNPYQRALLRQVIKPS VENKDLATAVVNQDVFLGLSEADVLTPALIKSMNQDPIIFALANPKPEIEPALAQANGVR LLATGSSKYPNQVNNILAFPGLFKGLLAAKGRKVDVGLQMTVARSLAAMISEPTAEKFIP NVFDGGVVDTVFNAVLDYIKQEKATAEEGT >gi|307679255|gb|GL456472.1| GENE 10 12886 - 14283 1682 465 aa, chain - ## HITS:1 COG:SPy1191 KEGG:ns NR:ns ## COG: SPy1191 COG5016 # Protein_GI_number: 15675160 # Func_class: C Energy production and conversion # Function: Pyruvate/oxaloacetate carboxyltransferase # Organism: Streptococcus pyogenes M1 GAS # 4 465 8 469 469 745 78.0 0 MSKKIRFTETVLRDGQQSLIATRMPTSDMLPIIKTMDEAGFHALEMWGGATFDSCVRYLN EDPWERLRQIRKEVKNTKLQMLLRGQNLLGYRHYADDVVRAFVEKSVENGIDIIRIFDAL NDVRNLQTAIQTTKEAGGHCQAAISYTTSEIHTIDYFVKLAKELSQTGADSICIKDMAGV LTPQTGFELVSKMKDAIDLPLEVHTHATSGISEMTYLKVAEAGADIIDTAISSFAGGTSQ PATESVAIALEDLGFETGLNMEKVTEIADYFNPIRDRFRSEGILNPKVKDTEPKTLIYQV PGGMLSNLLSQLTEQGLQDKYEEVLAEVPKVRADLGYPPLVTPLSQMVGTQALMNVISGE RYSLIPNEIKDYVRGEYGKSPAPIAEEIKQKIIGDEEVITCRPADLLKPELHSLEKEIQQ YAKSEEDVLLYAMFPQQGKDFLGRREDPFYDVPLQKVTVKLDLPE >gi|307679255|gb|GL456472.1| GENE 11 14276 - 14824 405 182 aa, chain - ## HITS:1 COG:SPy1190 KEGG:ns NR:ns ## COG: SPy1190 COG3697 # Protein_GI_number: 15675159 # Func_class: H Coenzyme transport and metabolism; I Lipid transport and metabolism # Function: Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) # Organism: Streptococcus pyogenes M1 GAS # 6 173 7 175 192 142 47.0 3e-34 MWYAMFNGEKVTLLEMLDAREQRAATQKELLETAPEASLLSATMNIPGEVKNSPTLTAVF LEVIDEVEQQLLDQVPIVNFYRNEKTGPEYYLAVSLAPQELKQRMVKIEETHPYGRLVDL DVLWGNEELKSLHRGDLGLPPRRCFMCQEEAKVCGRNRRHSLEAMQEKITEIILTRKEQP SE >gi|307679255|gb|GL456472.1| GENE 12 14805 - 16337 2047 510 aa, chain - ## HITS:1 COG:SPy1189 KEGG:ns NR:ns ## COG: SPy1189 COG3051 # Protein_GI_number: 15675158 # Func_class: C Energy production and conversion # Function: Citrate lyase, alpha subunit # Organism: Streptococcus pyogenes M1 GAS # 1 510 1 510 510 842 84.0 0 MVVNKVGKDIPQSYAEQYGIYEGELAHIDAYQEASRAIKPVKPRETKLLGSIREAIEKTG LKDGMTISFHHHFREGDYVMNLVLAEIAAMGLKNISIAPSSIANVHEPLIEHIKNGVVTN ITSSGLRDKVGAAISAGIMENPVVIRSHGGRARAVAAGDIHIDVAFLGAPSSDAYGNANG TKGKATCGSLGYAMVDAKYADQVVIITDTLVPYPNTPISIPQTDVDYVVEIDAIGDPDGI AKGATRFTKNPKELLIAEYAAKIITHSPYYKEGFSFQTGTGGSSLAVTRFMREQMLKDGI KASFALGGITNAMVELLEEGLVEKIIDVQDFDHPSAISLGENANHYEIDANMYASPLSKG AVINQLDTAILSALEVDTDFNVNVITGSDGVIRGASGGHSDTSMACKMSLVIAPLVRGRI PTIVEQVNTVVTPGTSVDVVVTEVGIAINPKRTDLIDCFKTLDVPQFTLEELKDKAYNIV GTPEPIKYGDKVVALIEYRDGSLIDVVRNV >gi|307679255|gb|GL456472.1| GENE 13 16340 - 17227 1175 295 aa, chain - ## HITS:1 COG:SPy1188 KEGG:ns NR:ns ## COG: SPy1188 COG2301 # Protein_GI_number: 15675157 # Func_class: G Carbohydrate transport and metabolism # Function: Citrate lyase beta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 295 1 295 295 436 83.0 1e-122 MERLRRTMMFVPGANAAMLRDAPLYGADSIMFDLEDAVSLKEKDSARVLVHSALKTFDYG NIEIVVRINALDAGGAEDIEAMVLAGVDVIRLPKTETAQDIIDVEAVITEVEQQNDIPVG TTKMMAAIESAEGVLNAPAIAKSSTRLIGIALGAEDYVTNMKTRRHPDGQELFFARSMIL HAARAAGIAAIDTVYSDVDNTEGFEAEVRLIKQLGFDGKSVINPRQIPLVNTIYAPTEKE IQNAKEVIWGIREAEAKGSGVISVNGKMVDKPIVERAERVIALALAAKLITEEEI >gi|307679255|gb|GL456472.1| GENE 14 17215 - 17523 435 102 aa, chain - ## HITS:1 COG:SPy1186 KEGG:ns NR:ns ## COG: SPy1186 COG3052 # Protein_GI_number: 15675156 # Func_class: C Energy production and conversion # Function: Citrate lyase, gamma subunit # Organism: Streptococcus pyogenes M1 GAS # 1 102 1 102 102 109 59.0 1e-24 MKIIKNATAGTVESSDIMITVQPIESTENTIELESSVEKQFGNQIRQVITTTLEHLDVQG VAVKAIDKGALDCTIKARMITVLHRGAEKETYDWKELDSWNV >gi|307679255|gb|GL456472.1| GENE 15 17529 - 18539 848 336 aa, chain - ## HITS:1 COG:FN0319 KEGG:ns NR:ns ## COG: FN0319 COG3053 # Protein_GI_number: 19703664 # Func_class: C Energy production and conversion # Function: Citrate lyase synthetase # Organism: Fusobacterium nucleatum # 15 329 10 325 345 236 41.0 4e-62 MSSVYTMKRIWLQKDKKAYQAWRELMEKAELQTTEALDYTVGIYDDTALIASGSLSGKTI KCVAVCKKYQSENLLTQLVVHLLEKLREENQLHSFLYTKPKNEQIFQSLGFQKVVANQEV LFMEQGKPDFADYLDYLTQHKKAGPASSIVMNANPFTKGHQYLVEKAAKESPHVYVFVLS EDKSLFSKEARFAMVQKGVAHLPNVTVLSTEDYLVSSATFPTYFLKEKAPLEVAAIQATL DATLFKERIAPILEIQQRYVGEEPYSEVTDVYNQAMQQVFGQTITLTIVPRLAIGGELIS ATKVRKAMAEGDKETLKKFLPATSYQYLVEHKKLMR >gi|307679255|gb|GL456472.1| GENE 16 18554 - 18688 249 44 aa, chain - ## HITS:1 COG:no KEGG:EF3323 NR:ns ## KEGG: EF3323 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 44 1 44 44 66 100.0 4e-10 MSVNMEDLKIAFELLGFGWGGVFVVLFIIYLASKLLTKLFPIKK >gi|307679255|gb|GL456472.1| GENE 17 18710 - 19825 1468 371 aa, chain - ## HITS:1 COG:SPy1184 KEGG:ns NR:ns ## COG: SPy1184 COG1883 # Protein_GI_number: 15675155 # Func_class: C Energy production and conversion # Function: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 371 1 373 373 463 77.0 1e-130 METLIQGVIGMGQEPGRIVMMLIGGLLMYLGIKKEYEPTLLVPMGLGTILVNFPNSGVLS AGGEPGPFNVLFDFGIKTELFPLLLFIGIGAMIDFGPLLQNPFMLMFGAAAQFGIFFTVI MAVLLGFDLNDAASIGIIGAADGPTSIFVANTLHSKYMGAIMVAAYSYMALVPIIQPVAI KAVTTKAERRIRMTYRAGEVSQTAKILFPVVITIVAGLIAPVSLPLVGFLMFGNLLRECG VLDRLSITAQNELVNIISILLGLSISVSMNYAEFLKVDTLMVIGLGLVAFIMDSVGGVLF AKFLNLFRKEKINPMIGAAGISAFPMSSRVIQKMATDEDPQNFILMHAAGANVSGQIASV IAGGLLLAFLT >gi|307679255|gb|GL456472.1| GENE 18 19855 - 20256 602 133 aa, chain - ## HITS:1 COG:SPy1183 KEGG:ns NR:ns ## COG: SPy1183 COG0511 # Protein_GI_number: 15675154 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxyl carrier protein # Organism: Streptococcus pyogenes M1 GAS # 1 132 2 131 132 119 68.0 1e-27 MLRKFKISIDGKEYLVEMEEIGGVPQPAPVAPQPTAPVATTETPAPAVEEAPAPAAQPAA PAGADAMPAPMPGTVLKVLVNVGDTVSENQPLLILEAMKMENEIVAGKAGTVTGIHVTQG QIVNPGEPLITIN >gi|307679255|gb|GL456472.1| GENE 19 20240 - 20602 376 120 aa, chain - ## HITS:1 COG:no KEGG:EF3326 NR:ns ## KEGG: EF3326 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 120 1 120 120 177 100.0 9e-44 MGLFKSLFKKEQHTQDTEINESVIQREADNLEKRWIDIPAYIPAEPKEYQLVSIVATAIA AGEFPESRFVIKKIAKRNPEAKEVAIIAASIAAELSEESQLVVKRISKQNLEEDHYVTQI >gi|307679255|gb|GL456472.1| GENE 20 21007 - 22404 1623 465 aa, chain + ## HITS:1 COG:SPy1180 KEGG:ns NR:ns ## COG: SPy1180 COG2851 # Protein_GI_number: 15675152 # Func_class: C Energy production and conversion # Function: H+/citrate symporter # Organism: Streptococcus pyogenes M1 GAS # 1 464 2 468 468 588 74.0 1e-168 MLLTILAYGMIIIFMYVIMKKKLSPFTSLVIIPLIFTLIAIATGVASPPPGADGVVPEVN IGNFVLDGISTTSKTGIMLLFAILYFSIMLDAGLFDPITKKMIYFAKGDPMKVLMATAVV AAAVSLNGDGTTTTLICCSAFIPIYKKLNMKLMNLGVLVILQNTIMNLLPWGGPTARAMA VLEVDADILSYLAPGMILSVLYVIFFVAYRMGKKERARLGVTTLTDKELEEMTIVNDPEL LEIRRPKNFAFNGILTIVLIGWLVLSSFVGQLGLPSWIEMPPLLLFLVGTCIALMINYPK LKDQSSRISANAGDAVQVVILVFAAGVFMGLFQGSGMANALANSFVNIIPKQLAGAWGLV IAFISAPGTFFISNDGFYFGVLPVLAEAGRSYGFDNMSMALASLMGQAFHLLSPLVAFIY LLLRLTGLDMGQWQKESAKYALGIFVIFVVTIVALGHMPLFIPQN >gi|307679255|gb|GL456472.1| GENE 21 22538 - 23233 880 231 aa, chain + ## HITS:1 COG:SPy1179 KEGG:ns NR:ns ## COG: SPy1179 COG1802 # Protein_GI_number: 15675151 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 229 1 229 231 258 61.0 5e-69 MNPTVEAVKRNLDLTSSKPLKICTYEAFKKTIILGDIPAGERINEKEFSEQLNISRTPIR FALQELVKEQLVEHIPMVGIVVKGISMKDAYEIYDIRKSLDTLATIKAMELMTPEDFDEL EALLLEGEQYNKNNQVDDLLQNFSDFNSFIYTKSQMLRLKKIVTDLHAYLIYFRDIAIRA SERRSIALEEHWLIFRGMKTKNIDQITLLTHEHLNRSLQFILKEMERRQIE >gi|307679255|gb|GL456472.1| GENE 22 23277 - 23999 647 240 aa, chain - ## HITS:1 COG:BH0820 KEGG:ns NR:ns ## COG: BH0820 COG0745 # Protein_GI_number: 15613383 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus halodurans # 1 229 1 228 234 131 33.0 1e-30 MRTEKILVVDDDAAVRRLIWKALQSTGILIYQSESIEKTKDIVSRVTFDLFILDDNLEHD SDGYYLVQMIREKYPLVPIIFFSSKKEEEDIIAALEMGVDSYITKPFSLNVFKAQVIASL NRARMIRKQLNVYKKEELQVGDFRFDYGRYQLFKKDLPISLSSKEVQLIQFFLENPEQVF SKEQIYSSVWGTGDVDANTIMVFINRLRSKLEENPKEPCYLRTVWGIGYTFTPDGCVQKK >gi|307679255|gb|GL456472.1| GENE 23 24185 - 24961 1015 258 aa, chain - ## HITS:1 COG:lin2985 KEGG:ns NR:ns ## COG: lin2985 COG1847 # Protein_GI_number: 16802043 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein # Organism: Listeria innocua # 5 256 7 206 206 153 37.0 3e-37 MPIYEGNTIEEATQKGLQALGLTKEDVTIDVLDEGKKGFLGLGKKLAQISMEPTISEQVT EAVEETVEDIVVADEAKAVEEAVEELTEAIPSLSEESTHSLENLEDEAAITELAMYLTNI SNELNAPAMVRIARENGNIIFHLETEKQGILIGKHGKVLNALQYLAQVFIHRIASNKLSI VVNVGNYREKRHEILERLAKRTAEKAKRTGRPVFLEPMPAFERKQIHHTLSKDEQIKTHS EGDEPYRYLVVEPVKKYF >gi|307679255|gb|GL456472.1| GENE 24 24976 - 25803 874 275 aa, chain - ## HITS:1 COG:L131778 KEGG:ns NR:ns ## COG: L131778 COG0706 # Protein_GI_number: 15672111 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Lactococcus lactis # 23 266 21 267 269 270 57.0 2e-72 MKKYKRLLLMAGLVTLVFVLSACGTAPVSESSTGIWDRYIVYYFAQAIKFLSLGGSVGIG IILFTLVIRIILLPLMHFQTKSMRKTQELQPQLKALQQKYSSKDPETQRLFREEQQRLYA ENNVNPYIGCLPLLVQLPIMMALYQAISRVPELKEGTFLWLSLDKPDPYLILPILAAVFT FASTYLSSMSQLETNASLKIMNYVMPAMIFFMGISLASSLSLYWVVSNAFQTGQTLLLNN PFKIRKEREEAARQAKARERALERAKSPKKKGKKK >gi|307679255|gb|GL456472.1| GENE 25 25803 - 26165 341 120 aa, chain - ## HITS:1 COG:SPy0246 KEGG:ns NR:ns ## COG: SPy0246 COG0594 # Protein_GI_number: 15674428 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNase P protein component # Organism: Streptococcus pyogenes M1 GAS # 3 114 1 110 119 111 58.0 3e-25 MPMKKSYRVKKEKEFQQVFNKKQSCANRRFVVYVLEKPQQAHFRVGISVGKKIGNAVTRN AVKRKIRASLFQLKDRISPEIDFIVIARPGLEKLSSEEVKANLTHVLNLAKILDVREGIE >gi|307679255|gb|GL456472.1| GENE 26 26363 - 26497 223 44 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29377774|ref|NP_816928.1| 50S ribosomal protein L34 [Enterococcus faecalis V583] # 1 44 1 44 44 90 100 3e-17 MKRTYQPNKRKRQKVHGFRKRMSTKNGRRVLASRRRKGRKVISA >gi|307679255|gb|GL456472.1| GENE 27 27020 - 28363 1486 447 aa, chain + ## HITS:1 COG:BH0001 KEGG:ns NR:ns ## COG: BH0001 COG0593 # Protein_GI_number: 15612564 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Bacillus halodurans # 1 447 1 449 449 474 53.0 1e-133 MPDVESFWHSLEEAYQAILSAPSFDAWIKTTRPLKLDNNQLWLEVPSAVHRDYWEKNLSA KIVETGFKLTGAEVMPHFVVADEKDAALAQELEEPAEEEVVFSEQSKKAMLNPKYTFDTF VIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMLVNQPDAKVKYV SSETFTNEFINSIQTKTSEQFRKEYRNVDLLLVDDIQFLAEKEATLEEFFHTFNDLYNEN KQIVLTSDRPPNDIPKLPERLVSRFAWGLSVDITPPDLETRIAILRKKADAERLEIPDDT LSYIAGQIDSNIRELEGALVRVQAFATINGEDITTSLAADALKSLKSVGSKNQLSILQIQ EEVSKYYHVPLKDLKGKKRVKTIVVPRQISMYLAREMTDNSLPKIGAEFGGKDHTTVIHA HEKIQQLLEKDPAIQKEVSEIKNLLNS >gi|307679255|gb|GL456472.1| GENE 28 28565 - 29695 1428 376 aa, chain + ## HITS:1 COG:BS_dnaN KEGG:ns NR:ns ## COG: BS_dnaN COG0592 # Protein_GI_number: 16077070 # Func_class: L Replication, recombination and repair # Function: DNA polymerase sliding clamp subunit (PCNA homolog) # Organism: Bacillus subtilis # 1 375 1 377 378 343 51.0 3e-94 MKLTVKRSVFLQELQTVQRAISSKTTIPILTGVKIVLSEDGLSLTGSNADISIESFLSKD DEKAQMTIERTGSIVLQSRFFGEIIRKLPEDMFTMEVLDNNQVAITSGKADFTVNGLDAD NYPHLPVIDTQNQMKLPVHLLTKIISETGFAVSMHESRPILTGVHFILENQKLLAVATDS HRLSQRVIPTEQAVEDFNIVIPGKSLTELSRSLTNEEEMVEISIMENQVLFKTETMYFYS RLLEGNYPDTNRLIPTSHNTQIEFYVPELLSAIERASLLSHEGRNNIVRLSISPDSVVLY GNSPEIGKVEEALNYENVSGEALDISFNPDYMKDALRAFGDMNITVKFLSPIRPFTLEPT ETELDFIQLITPVRTN >gi|307679255|gb|GL456472.1| GENE 29 30274 - 30519 286 81 aa, chain + ## HITS:1 COG:BS_yaaA KEGG:ns NR:ns ## COG: BS_yaaA COG2501 # Protein_GI_number: 16077071 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 70 1 70 71 70 52.0 5e-13 MKKTFVLATEYITLGQFLKEINVIGSGGQAKWYLADNSVFVDGELENRRGRKLYAGMMIE IPEEGTFFMVKNGNESDDAAE >gi|307679255|gb|GL456472.1| GENE 30 30506 - 31633 989 375 aa, chain + ## HITS:1 COG:lin0005 KEGG:ns NR:ns ## COG: lin0005 COG1195 # Protein_GI_number: 16799084 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair ATPase (RecF pathway) # Organism: Listeria innocua # 1 372 1 370 370 399 55.0 1e-111 MRLNELTLQHYRNYETVSLDFPKTLNLFLGENAQGKTNLLESIYVLAMTRSHRTSNEKEL IGWEQAAAKISGVVEKKTGTVPLEILISNKGRKTKVNHIEQKRLSAYIGQLNVILFAPED LSLVKGSPQVRRKFIDMELGQVSPIYLYDLVQYQSVLKQRNQYLKQLAEKKQTDTVYLDI LTEQLAEFGGKVLYARLGFLKKLEHWANLLHQKISHGRETLTIDYASSIPIDNTDLSLEA LQNQLLQQLMNNRKRELFKANTFLGPHRDDLLFIVNGQNVQTYGSQGQQRTTALSIKLAE IDLMHSETGEYPVLLLDDVMSELDNERQIHLLETIEGKVQTFLTTTSLDHIKDKLTVEPD IFYVQQGKIERNSAT >gi|307679255|gb|GL456472.1| GENE 31 31630 - 33579 2394 649 aa, chain + ## HITS:1 COG:L0283 KEGG:ns NR:ns ## COG: L0283 COG0187 # Protein_GI_number: 15672887 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Lactococcus lactis # 1 643 1 646 651 961 77.0 0 MTEEEKNMRERAQEYDASQIQVLEGLEAVRKRPGMYIGSTSGEGLHHLVWEIVDNSIDEA LAGFAKSIQVIIEPDDSITVIDDGRGIPVGIQAKTGRPAVETVFTVLHAGGKFGGGGYKV SGGLHGVGSSVVNALSTSLDVRVYKDGKVYYQEYRRGAVVDDLKVIEETDRHGTTVHFIP DPEIFTETTVYDFDKLATRVRELAFLNRGLHISIEDRREGQEDKKEYHYEGGIKSYVEHL NANKDVIFPEPIFIEGEQQDITVEVSMQYTDGYHSNILSFANNIHTYEGGTHESGFKTSL TRVINDYARKQKLMKENDEKLTGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSEVRTVT DRLFSEYFTKFLMENPTVGKQIVEKGMLASKARLAAKRAREVTRRKGALEISNLPGKLAD CSSKDPEKCELFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILANEEIRS LFTAMGTGFGEDFDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRFMRPIVEAGYVYIA QPPLYGVKQGKNITYVQPGKHAEEELAKVLEELPASPKPSVQRYKGLGEMDDHQLWETTM DPEKRLMARVSVDDAIEADQIFEMLMGDRVEPRRAFIEENAHYVKNLDI >gi|307679255|gb|GL456472.1| GENE 32 33635 - 36136 3048 833 aa, chain + ## HITS:1 COG:SPy1152 KEGG:ns NR:ns ## COG: SPy1152 COG0188 # Protein_GI_number: 15675129 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Streptococcus pyogenes M1 GAS # 8 832 5 827 828 1119 70.0 0 MSEEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTP DKPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAA MRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMA TNIPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGS ITVRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREG MRIVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKE VITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQ AQAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFG DARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQGMGVH DDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQA IISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVTTNGNQ KMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYVVGAAILDENKEVLVITENGY GKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGDEDILLITNKGVIIRFNVDSV SQTGRATLGVRLMRMEDGAKVVTMAVVEPEEVEEEIVEVVETTENETTSETEE >gi|307679255|gb|GL456472.1| GENE 33 36311 - 36613 510 100 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374668|ref|NP_813820.1| 30S ribosomal protein S6 [Enterococcus faecalis V583] # 1 100 1 100 100 201 100 2e-50 MSQDTKYEIMYIIRPNIDEEAKTALVERFDTILKDNGAEVIESKDWEKRRLAYEMNGFRE GIYHIVNVTSPSTAGAINEFDRLAKINDDIIRHMIVKVEA >gi|307679255|gb|GL456472.1| GENE 34 36658 - 37224 636 188 aa, chain + ## HITS:1 COG:L0302 KEGG:ns NR:ns ## COG: L0302 COG0629 # Protein_GI_number: 15674172 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Lactococcus lactis # 1 188 1 166 166 183 59.0 1e-46 MINNVVLVGRLTKDPDLRYTASGSAVATFTLAVNRNFTNQNGDREADFINCVIWRKPAET MANYARKGTLLGVVGRIQTRNYENQQGQRVYVTEVVCENFQLLESRSASEQRGTGGGSFN NNEKGYQSQNRSFGNNNAGSGFNNNNNSFNPSSSQSQNNNGMPDFDKDSDPFGGSGSSID ISDDDLPF >gi|307679255|gb|GL456472.1| GENE 35 37250 - 37489 397 79 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374670|ref|NP_813822.1| 30S ribosomal protein S18 [Enterococcus faecalis V583] # 1 79 1 79 79 157 100 2e-37 MAQQRRGGRKRRKVDYIAANHIEYIDYKDTELLKRFISERGKILPRRVTGTGAKNQRKLT IAIKRARIMGLLPFVSDEQ >gi|307679255|gb|GL456472.1| GENE 36 37695 - 39671 785 658 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|162447066|ref|YP_001620198.1| bipartite protein: signaling protein and ribosomal protein L9 [Acholeplasma laidlawii PG-8A] # 9 647 6 659 818 306 30 1e-106 MQKKRIQKNGFLIVVGLLLVEFLLYFLLTNKWLLLAVIIALDIFLLVVIRLLIRDVEITN VEKIQEASSIAEQSLDYVVNEVPVGIITYNGETRAVEWLNPYAASIFNKDNQLTLTTSQV TSYLELAERNQDIFTIDENTYRFSVNKEQHTITFEDITKESNLYQEKVEMQTAIGIVSVD NYDDVTDTMDEKEISYLNSFITTMVSDWMDQYKVFYKRINAERYFFIAQWEDIQKMMDEK FSILDTIRKESANHEVAITLSMGIAYGGPTLDQTGTTAQTNLDTALVRGGDQVVVKEAKD EAKPLFFGGKTAVTTKRSQVRSRAMSMAIKGIIAESADIYIMGHRYPDMDALGSAFGVAR LASFNNRKAWIVLDENEIIPDVKRVLEAIKEYPELEERIISPKEAMKRKKESSLLVMVDY HKPSLSISQELYERFDKVVIIDHHRRGDEFPAKPLLSYIESSASSASELVTELIEYQSNS ANKLQAFEATMMLAGIVVDTKSFNTRTTARTFDVASYLRTCGADSSLVQYLLSSDLTSYL EMNNLISKSEYVTKDTVVVAGSEDKEYDSVTAAKTADTLLSMAGINAAFVITKRTDQQIG ISARSNGSINVQIIMENLGGGGHFTNAAVQLSNVTVAEVKEQLLDVIRQNINEMYEQE >gi|307679255|gb|GL456472.1| GENE 37 39668 - 40129 759 153 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227518097|ref|ZP_03948146.1| 50S ribosomal protein L9 [Enterococcus faecalis TX0104] # 1 153 1 153 153 296 99 2e-79 MKEMKVIFLQDVKGKGKKGDVKEVPTGYAQNFLIKNGYAKEANKGSMSALAGQKKAQEKH EAEVLAQAKEMQAFLEDEKTVVEIKAKAGEDSRLFGSIPSKQIAEALNKQYNVKLDKRKI ELANPIRSLGYTNVPVKLHHEVTAKIKVHVVAE >gi|307679255|gb|GL456472.1| GENE 38 40402 - 41769 1779 455 aa, chain + ## HITS:1 COG:L0286 KEGG:ns NR:ns ## COG: L0286 COG0305 # Protein_GI_number: 15672728 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Lactococcus lactis # 1 452 1 452 455 535 67.0 1e-152 MNELLQDRVPPQNIEAEQAVLGSIFLDADVLIEAMEYVEPKDFYRRSHQLIFQTMMTLSD RNEAIDVVTIKDRLEQENLLEDVGGLSYLSDLALAVPTAANVIYYAKIVEQKSLLRNLIQ TATEIVTKGFEQGEDVESILDDAERSILEVSEKRNRSGFLSISDVLNTTIANIDQLYQND EEITGLPTGYQALDKMTAGLQAEELIILAARPAVGKTAFALNIAQNVGTKTDKAVAIFSL EMGAESLVNRMLCAEGSIEASHLRTGQLSEEEWQNLIIAMGSLSRANIYIDDTPGIKITE IRAKCRKLAQEKGNLGLILIDYLQLIEGTGKENRQQEVSDISRQLKKLAKELKVPVIALS QLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYDRGEGEDGDHEPPEVDNVV EVIIEKNRSGARGTVELLFIKEYNKFSSLSPRTEF >gi|307679255|gb|GL456472.1| GENE 39 41895 - 43298 1615 467 aa, chain + ## HITS:1 COG:SPy0160 KEGG:ns NR:ns ## COG: SPy0160 COG0104 # Protein_GI_number: 15674367 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate synthase # Organism: Streptococcus pyogenes M1 GAS # 38 467 1 430 430 753 85.0 0 MTETLLIVKEYSIFTLERDWFYWYNDSGQKNYERGVRMSSVVVVGTQWGDEGKGKITDFL SENAEVIARYQGGDNAGHTIKFDGVTYKLHLIPSGIFYKEKISVIGNGVVVNPKSLVKEL AYLKENNVATDNLRISDRAHVILPYHIKLDQLQEDAKGENKIGTTIKGIGPAYMDKAARV GIRIADLLDKEIFAERLQINLEEKNRQFVKMFDSEAIEFDDIFEEYYEYGQQIKQYVTDT SVILNDALDAGKRVLFEGAQGVMLDIDQGTYPFVTSSNPVAGGVTIGSGVGPSKINKVVG VCKAYTSRVGDGPFPTELFDETGETIRRVGKEYGTTTGRPRRVGWFDSVVMRHSKRVSGI TNLSLNSIDVLSGLETVKICTAYELDGELIYHYPASLKELSRCKPVYEELPGWSEDITGC KTLADLPANARNYVHRISELVGVRISTFSVGPDRNQTNVLESVWAQI >gi|307679255|gb|GL456472.1| GENE 40 43423 - 44292 979 289 aa, chain + ## HITS:1 COG:L123851 KEGG:ns NR:ns ## COG: L123851 COG1307 # Protein_GI_number: 15673853 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 1 289 1 288 289 209 38.0 6e-54 MNYQLVTDSCCDLPYTYLKENQVPFISMNIQIDGKEYRDDLGETFDYQNFLTAIKNGSMP TTSQVNVGRYNEFFRPFVEQGLPVIYLAFSSGLSGSYQSALQSVEMLKEEYDNVEIHIID TKAASLGQGMLVREAIRLQTDGHSLGEVVAYLEEQKMKLHSWVTVDDLKHLERGGRISKT AAALGGLMNIKPIIRVDAAGKLASVGKTRGRNKSLQKIAQETIQGIVEPMKQTLLIAYAG TKDDAEKVKELIEKEIEVNEILIYPLGPTITSHTGIGCIAVFSFGEKRK >gi|307679255|gb|GL456472.1| GENE 41 44296 - 44520 86 74 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307296604|ref|ZP_07576424.1| ## NR: gi|307296604|ref|ZP_07576424.1| conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX0411] # 1 74 1 74 74 126 100.0 4e-28 MSLGQKSLWIFVPGLKIDKRREQKQHYALLRSQQLLRAKALRVEGPSEISRNSPKIIEHR VGIMQHQLVPRCVL >gi|307679255|gb|GL456472.1| GENE 42 44635 - 46266 1988 543 aa, chain - ## HITS:1 COG:BS_ykpA KEGG:ns NR:ns ## COG: BS_ykpA COG0488 # Protein_GI_number: 16078507 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Bacillus subtilis # 1 540 1 539 540 798 72.0 0 MITVNDVSLQFPDRKLFEEVNIKFTPGNCYGLIGANGAGKSTFLKILSGEIQPTTGVVSM GPNERLATLKQNHFDYEDYTVLETVIMGHKRLYEVMKEKDAIYMKEDFSDEDGIRAAELE GEFAELDGWEAEPEAAVLLQGLNIPEELHDQKMSELTAGQKVKVLLAQSLFGKPDVLLLD EPTNGLDTRSINWLEEFLINFENTVIVVSHDRHFLNKVCTHMADLDFSKIKLYVGNYDFW LESSQLATKLQAQSNAKKEEQIKELQDFIARFSANASKSKQATSRKKMLDKITLDDIQPS SRRYPFVGFTPEREIGNDLLQVENVSVTIDGKKILDNISFNLTKDDKVAFIADSDITTTT LFKVIMGEITPDTGSVRWGVTTSQAYLPKDNSKDFEEPLTILDWLRQFAGKEEDDNTFLR SFLGRMLFSGEEVLKPVNVLSGGEKVRVMLSKLMLSKANVLVLDDPTNHLDLESITALND GLMAFTGSILFASHDHQFIQTLANRIIAVSDKGVIDRAETTYDEFLENPEIQKQMDILFS SDY >gi|307679255|gb|GL456472.1| GENE 43 46518 - 49403 2746 961 aa, chain + ## HITS:1 COG:lin0778_1 KEGG:ns NR:ns ## COG: lin0778_1 COG1221 # Protein_GI_number: 16799852 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Listeria innocua # 1 469 1 461 464 408 45.0 1e-113 MKRIEKIYQYVKEQTKNLTPMTLTSDAGVTTQEISERLNIQRTNTSKDLNQLVREGRLKK LSGRPVKYVAQVAFQHRPLTKPVKSYREKSMDHSTKTFIEPLVEPVVTTSKTPEVEDIFK KIIGSAGSMKTPVEQAKAAILYPPKGLNCLITGPTGSGKTYFAHAMFQFAKLNQIVAKEK EFVVFNCADYAHNPELLMSHLFGYVEGAFTGATKAKEGIIDEADGSILFLDEVHRLPPEG QEMIFYFMDHGVYARLGETVKSHHADVRIICATTENPTSSLLNTFVRRIPIIIQLPNFSD RPAKEKIDLLKVMVSMEAARIQRRISLSEDVVKALIGSVSYGNVGQLKSNVQLVTARGFL NQMEQEELMITMDELTDNIKEGIMQLASNREVLSELSKYLEPQLVVSPNESLVAIQSDAY ELPYNLYEIIGDKAALLKADGLDQELINNFITTDINVHLKSFYKDYGFTFDTENKLAEIV DQRIIDVTKKIYNFAAKRLSYSFQPNFIYAMSLHISSFLKRIQLGKDPKHPLNESIRNMV LDYPTEFETAKEIKNIIESSYQMEIPESESYYLAVLLISLRENPEAGRIGIVVAAHGNST ASSMVQVVSQLLNVDNLKAVDMPLDMPPKEALRKIVEAVGEVNEENGVLLLVDMGSLSTF SEEIVRQTGIDVRTVDMVTTPIVLEAARKTALIDTQLETLHESLKNFHGYADIRQSETKQ IIENWKTRAIIAICASGEGTARRMKELIEEAVLPQIDWHLEVIPLSIVNMKEVLPKIQED YEIIATTGITNPKIGVPYISMENFFSGEAEKIIQQLLAERKEEVMNKPLDEAAAKEICLK YMEQSFTFINGKKIIDLLWSFAKNIQTQLAMPEEYTFYINLIMHTSGMLERILRNDTLTV SEKELGRLVQEPIYPVIVASIETMEEALNMDVPAEEVYFIAQLVKNAQCIEDKITEIDTL D >gi|307679255|gb|GL456472.1| GENE 44 49606 - 50118 527 170 aa, chain + ## HITS:1 COG:lin0776 KEGG:ns NR:ns ## COG: lin0776 COG3444 # Protein_GI_number: 16799850 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Listeria innocua # 3 163 1 161 161 190 63.0 1e-48 MVMDIRLARIDDRLIHGQVATVWAKLTNINRILVVSDSVAHDNLRKALLVQAAPPGVKVN VITVQKMIDVYPDPRFDSFRAMLLFTNPLDVKRVVEGGVQLTSVNIGGMSFSTGKRMITN AVAVDANDLKAFLFLNEQGIELEIRKVAADSQVNLMDLLKKERSKENNAS >gi|307679255|gb|GL456472.1| GENE 45 50353 - 51345 1310 330 aa, chain + ## HITS:1 COG:lin0143_2 KEGG:ns NR:ns ## COG: lin0143_2 COG3444 # Protein_GI_number: 16799220 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Listeria innocua # 166 327 1 162 165 243 84.0 3e-64 MVGIILASHGEFAEGILQSGAMIFGEQENVKAVTLMPSEGPDDVKAKMQEAIASFDNQDE VLFLVDLWGGTPFNQAKSLLEDHKDKWAIVAGMNLPMVIEAYASRFSMESAQEIATHILE TAKDGVKVKPEELQPAEAPKAAATEDAQPKGSLPPGTVVGDGKIKFVLARIDSRLLHGQV ATAWTKATQPNRIIVVSDAVAKDDLRKKLIEQAAPPGVKANVIPISKMIEVAKDPRFGNT KALLLFENPEDVLKVVEGGVEIPEVNVGSMAHSVGKVVVSKVLSMGQEDVDTFDELKAKG IKFDVRKVPNDSKANMDEILKKAKNELANA >gi|307679255|gb|GL456472.1| GENE 46 51380 - 52183 1061 267 aa, chain + ## HITS:1 COG:lin0144 KEGG:ns NR:ns ## COG: lin0144 COG3715 # Protein_GI_number: 16799221 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Listeria innocua # 1 267 1 268 268 332 86.0 4e-91 MSVISIILVLLVAFLAGMEGILDEFQFHQPLVACTLIGLVTGNLEAGIVLGGTLQMIALG WANIGAAVAPDAALASVASAIILVLGGQGVKGVPSAIAIAVPLAVAGLFLTMIVRTVAVP IVHMMDAAAEKGNIKQVEMLHIFAVCLQGIRIAIPAGALLFIPADTVRNFLESMPAWLTD GMAIGGGMVVAVGYALVINMMATKEVWPFFIIGFVVAAISQLTLIALGALGVALALIYLN LSKMGGSSNSNGGGNSGDPLGDILNDY >gi|307679255|gb|GL456472.1| GENE 47 52206 - 53117 1324 303 aa, chain + ## HITS:1 COG:lin0145 KEGG:ns NR:ns ## COG: lin0145 COG3716 # Protein_GI_number: 16799222 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Listeria innocua # 1 303 1 303 303 502 86.0 1e-142 MAEKIQLTKKDRLAVAWRSTFIQGSWNYERMQNGGWAFSMIPAIKKLYKTKEERSAALKR HLEFFNTHPYIASPILGVTLALEEERANGAPVDDVAIQGVKVGMMGPLAGVGDPVFWFTV RPMLGALGASLAMGGNILGPILFFVAWNLIRWSFMWYTQEFGYKAGSKITDDLSGGLLQD ITKGASILGMFVLAALVQRWVSIKFLPIVSQVKLDKGAYIEWDKLPAGGEGMHKAFEQVN QGLALSPTKVTTLQDNLDQLIPGLAPLLLTFLCMWLLKKKVSPIVIILGLFVVGVVGHLI GLL >gi|307679255|gb|GL456472.1| GENE 48 53279 - 53656 430 125 aa, chain + ## HITS:1 COG:CAP0069 KEGG:ns NR:ns ## COG: CAP0069 COG4687 # Protein_GI_number: 15004773 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 123 12 134 135 194 78.0 5e-50 MVQSLNTKVDLVIDATAFTGLTDYGQIMIGDRGFEFYHAKDPRKFIQIPWEEVDYVLASV MFKGKWIPRYAIQTKKNGTYTFASKEPKRVLRAIREYVDPDHMVQSLSFFDVIKRGILSI GKKKK >gi|307679255|gb|GL456472.1| GENE 49 53904 - 54431 640 175 aa, chain + ## HITS:1 COG:SA2491 KEGG:ns NR:ns ## COG: SA2491 COG3247 # Protein_GI_number: 15928285 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 3 174 2 169 170 77 33.0 9e-15 MEQRQHHGMDWGSLVLGILFVLTALISFQNPAGNLIAIVMVFAIFAIIKGIFEIFVRNRM KELLGYKAYAPIILGIIDILIGVYLLFNLNIGVAVLPFVFAIWFLFDSIFGLFTLDFAKR VSTGYFWFTLIVDVLGIILGVMLLFNPLSSALTLSFLVGFYFMMFGISNIVYAFR >gi|307679255|gb|GL456472.1| GENE 50 54479 - 54682 246 67 aa, chain - ## HITS:1 COG:no KEGG:EF0026 NR:ns ## KEGG: EF0026 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 67 1 67 67 89 98.0 6e-17 MNNQRPMFINILLVVLLFLVVGSLFSAVVGIVGSLLWLAVKILVPVAIIVWLVRTISGNN GNCRRRY >gi|307679255|gb|GL456472.1| GENE 51 54880 - 55650 832 256 aa, chain + ## HITS:1 COG:BH2675 KEGG:ns NR:ns ## COG: BH2675 COG1737 # Protein_GI_number: 15615238 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 17 245 22 259 287 90 28.0 4e-18 MSTEGLIALLEKKRNHLSKIENQVLDYILTHMTEISSQTIYEVAQALFVSTATISRTAKH LGYRGFQELKYAIVQSVQSESTESDSRSFQAITQQLIANVQDSFQQMDEAKVAEMLKMIE RANTIEVFGVGGSFPICTDFARKLTFLGKKAYARSDWDEQAAAVKNLDGQDLAIFVSYTG ETKGILAYARVAQEQQVPMISLISTKGSTLEKLSTTTLFAKGTTRYHQRVDLSSRIAVIC LFDTVLLMYAEAKQPR >gi|307679255|gb|GL456472.1| GENE 52 55799 - 57367 1607 522 aa, chain + ## HITS:1 COG:malX_1 KEGG:ns NR:ns ## COG: malX_1 COG1263 # Protein_GI_number: 16129579 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Escherichia coli K12 # 7 425 8 430 450 498 61.0 1e-140 MAVKKKKATFWEFFQGLGKTFMLPVALLAFMGILLGLGSSFSSESMIETVPFLGKPAVKI IFQFMSTIGGFAFAYLPVMFAMAIPLGLVRKEKGIAAFSGFVGYTVMNLAINFYLVQTNR LVDPEQLREAGQGMVFGIQTIEMGVLGGIIAGLIVYKLHNRFYTVQLPDSFAFFSGARFV PIITSLVMAFVGLVIPLVWPLFALMIMAIGQLIQRSGIFGPFLFGSGERLLLPFGLHHIL VSMIRFTEAGGSAVVAGKEVFGALNIFYAELQNNLPISPSATAFLSQGKMPTFIFGLPAA ALAMYHTAAPANRHKIKGLLLSGVIATAITGITEPIEFLFLFISPLLWLFHVIMTGLGFM VMALLGVVIGNTDGGLLDFVIFGLLQGTYTKWWWVLIVGAIWFVVYYFVFKTVIVTFDLK TPGRDKVLDETEYIDQEVQYKKTGGYDAPGILAALGGQENIQAIDNCITRLRLVLADANK VDDDKLKQLGALGVVHLDAQNVQVIIGTKVTTVRNQLEMILG >gi|307679255|gb|GL456472.1| GENE 53 57391 - 58596 907 401 aa, chain + ## HITS:1 COG:malY KEGG:ns NR:ns ## COG: malY COG1168 # Protein_GI_number: 16129580 # Func_class: E Amino acid transport and metabolism # Function: Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities # Organism: Escherichia coli K12 # 3 388 4 389 390 353 45.0 4e-97 MSFDKAIDRRGTYCTQWDFVEDRFGEADLLPFTISDTDFAVPEAVLATLQERLKHPVFGY TRWNHPQLKEAIQTWYQTRFQTKIEEHWIMYTPTVIYGISALIQLLTNEGEGIILQTPAY DAFFKVIQENKRQVVANELLYQEKCYSIDFIDLEKKLAQPENRCLLLCSPHNPTGRVWEQ WELERMVSLCQQYDVFLLSDEIHMDIVNKGQVHRPITQFDYKKSAIITSGTKTFNFPGLI FAYALIPDNELRDAFQLKLKNADGLSSTSILGMLATMTAYQKCGTWVDELNDYLAENQRY VKDFLQTYLPKIKVTKLEATYLMWLDVSAAVPDVARLQEALVSVGKVAIMDGSIYGGNGQ RFLRLNIGCSQAKLHEGLERMRQGFEAVLQKDGTASALGNN >gi|307679255|gb|GL456472.1| GENE 54 58696 - 59076 445 126 aa, chain + ## HITS:1 COG:SP1567 KEGG:ns NR:ns ## COG: SP1567 COG0251 # Protein_GI_number: 15901410 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Streptococcus pneumoniae TIGR4 # 2 124 3 125 126 156 63.0 1e-38 MKTIKTKQAPQAIGPYSQAKIVNGLLITSGQIPLDPETGKVVGTTIKEQTNQVLKNIQGI LTEAGSDFAHVVKTTCYLQNMADFTAFNEVYAEYFSAEYPARTTIEISKLPMDVLVEIEI IAEVVA >gi|307679255|gb|GL456472.1| GENE 55 59268 - 61859 2199 863 aa, chain + ## HITS:1 COG:lin1803_2 KEGG:ns NR:ns ## COG: lin1803_2 COG2898 # Protein_GI_number: 16800871 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 257 849 1 590 613 413 38.0 1e-115 MKKNISQLTQWLKEHSLLLKLIFLGSVLVFVANQVTHIAQGMTWADIFSTMEQQSTGRLI GMVLAGLLGVIPMLLYDYVVVKLLEKEGKPPMKRMDWLTSAWVTNTINNLAGFGGVVGAT LRINFYGKDVPRGKVVATVSKVALFLISGLSILSFVAFVDLFFIRTQNVFREYWVWLLLG SLIAPALWFFTYLKRRTLFKTFFPKAVLLLFGASLGQWLGGMFAFLMIGRLMQVPVSMVS VYPMFVIATLIGMLTMVPGGMGTFDVLMILGLSQLGIDRSQAVVWLLYYRLFYYVTPFMT GVILFLQQAGMKVNQFFDNLPRLFSQKVAHFILVAALYFAGIMMVLLSTVTNLSNVSRLF QVLLPFSFNFLDQTLNLFVGFLLLGLARGISMKVKKAYWPTIILLGFCIVNTVARTTSWQ LIAVYAVILLAVILARKEFYREKFVYSWGALTVDSILFGCLFIGYAVAGYYAARPAGGNQ VINHFLLFPSDDVWFNGLIGLSISLIGLFFLYQYLAETTVTLGEGFEEARLTRFLEKFGG NEGSQFLYLKDYGHFYYQEEGEDQVLFGFQMKFNKCFVLADPIGQREKWTAATLAFMDQA DLLGYQLVFYRISEEYVMNLHDCGFEFMKVGEEGLIQFDEPSTVNQTAWTETVTEKIAAE AADFQFEFYPETISDALYQELERVSADWSRNQKERYFIGGRLDPEYLKCSSVGLVRQKQT VIGFITGKEMEKGKSISYDLLRIRSEAPAFTREYLFTHFIETYQQQGYQLIDIGMAPLAN VGESKYSFLKERFVNIFYKYSYQIYAFQDTRKRKEQYVTSWQPRYFAYPKRTSVLFAFVQ LSLLITKGRHQSVSLVEEAMTEI >gi|307679255|gb|GL456472.1| GENE 56 62168 - 62275 70 35 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MACNVKMSSCFIQIHGLGLTKSKLELIKMFYNDDK >gi|307679255|gb|GL456472.1| GENE 57 62410 - 62916 78 168 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229547100|ref|ZP_04435825.1| ## NR: gi|229547100|ref|ZP_04435825.1| membrane protein [Enterococcus faecalis TX1322] hypothetical protein HMPREF9498_01076 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9521_01902 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9515_02242 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9509_03279 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9504_01586 [Enterococcus faecalis TX0102] membrane protein [Enterococcus faecalis TX1322] hypothetical protein HMPREF9509_03279 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9515_02242 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9521_01902 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9498_01076 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9504_01586 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9496_01452 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9500_00573 [Enterococcus faecalis TX0017] hypothetical protein HMPREF9501_00867 [Enterococcus faecalis TX0027] hypothetical protein HMPREF9502_01178 [Enterococcus faecalis TX0031] hypothetical protein HMPREF9503_02343 [Enterococcus faecalis TX0043] hypothetical protein HMPREF9508_01754 [Enterococcus faecalis TX0312] hypothetical protein HMPREF9517_01113 [Enterococcus faecalis TX1341] conserved domain protein [Enterococcus faecalis TX1467] # 1 168 4 171 171 201 99.0 2e-50 MNTKKWNWSILAFFIPYLVSNIFLFFTLTEKDNKLLKMIEESSKLLNISNGEFNFFMIVI VIIANLCIFFVTFIILKIVLLIFGFKKNYNQDIFISLLLSVSVVNLLVLFISEIVTIDRL PLSISTSSIEVIIFLLLFYSNTKDVKATKLLFFGKLWLLLFNIVSLVV >gi|307679255|gb|GL456472.1| GENE 58 63185 - 65800 2526 871 aa, chain - ## HITS:1 COG:SP2231 KEGG:ns NR:ns ## COG: SP2231 COG4485 # Protein_GI_number: 15902035 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 6 844 2 829 850 527 39.0 1e-149 MKNKSRQFLKNNWPYMLASFFIPFLIMAIIYLSIGIYPGSSRSVLASDAFSQFSNFHASF NNVLHGKQSLFYTWNASLGLNYLSLISYYLGGLFTPLVFFFNNQNMPDALYFLTLLKIGS AGLSFWFLAKQTFKIPKWSHVTLSVSYALMSFIVAHSELIMWLDAFIYLPLVILGIHRLM DQRKPTLLFVSYFLLFITNYYFGFMIGLFSFLYYFARTFTDWQRYKSRIVAYFTTSLLAG GASMIMVLPAVLDLRTNGETLSEITTFKTEATAFLDIIMKNMIGVYDTTKYGSIPFIYIG LLPLIFCLFYFVTKEVPLKNKLLFGSLFVLLIASFYITPLNLFWHGMHAPNMFLFRYSFL FSFLVILLAGYGWEKFEKDDLGVLSGLILILLAIFALAMGTKGATSYTYVTLTSFVLTAT FLLLYFFGIAFYQLKKAPMQYLVILLLLLVSGEAIINTRAMVTGILDDWNYASRSLYSEP YPDLKNLVDQTKKENDTFYRLENLNGVSANDGINYGYSGISMFSSVRNRHSSTYLNALGF RSRGTNLNIRYQNNTLLMDALMGIKYNIAENNPMKFGFERQAAAGKYQLYRNENALPLGF LADKEIYNVRQPLNDNLGSQTNLLNALANTNERYFTFYQPTMTLQNNVTITQNTAGVTFT EKQHNVAKEISYTVNVPANTQAYLSLFPTDFAQLESSTATVTVNGSSQQSQIGITGQYYN LGYYPKDTTVNFKVSFYGTKAVSFVQPQVVGLNTNAFEKAISAVQEKGVDLTTGKRSASG TFTADKDQVLVTTIPYDKGWRVKIDGKKVTPKAFKDAFLSVPVSAGTHTIQFSYLPEGLI PGIVLFVLCTGGFVAYVTLIPARRNRKKEDK >gi|307679255|gb|GL456472.1| GENE 59 66345 - 66854 629 169 aa, chain - ## HITS:1 COG:YDR540c KEGG:ns NR:ns ## COG: YDR540c COG4283 # Protein_GI_number: 6320749 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Saccharomyces cerevisiae # 1 166 1 166 179 174 57.0 5e-44 MRTYESKEALIEAIQIASQKYLAEFAEIPETLKDHRIETVAKTPSENLAYQLGWLNLLLS WEEQEQRGLTVQTPAEGYKWNQLGSLYQSFYQTYGQMSLESQLIALQDTLEKLLHWIDSL SEDELFLPQQRAWATTKAQWPLWKWIHINSVAPFTSFRTQIRKWKKACL >gi|307679255|gb|GL456472.1| GENE 60 66862 - 67329 514 155 aa, chain - ## HITS:1 COG:no KEGG:EF0035 NR:ns ## KEGG: EF0035 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 154 1 154 155 292 99.0 4e-78 MKNTQFALFMVLNGRATEALTFYQEAFAGDILFKITNQEFKERLNPSLTIPAGEEHWLSH SILQMDTFQLQLADNPLFAGMNTMPTEQLTLSLTVNSRHSAKTIFEKLTCHPESCIIQEP IENEFATFYAIVKDPFGLVTQITHEKQADPTKKGR >gi|307679255|gb|GL456472.1| GENE 61 67385 - 68341 769 318 aa, chain + ## HITS:1 COG:lin0383 KEGG:ns NR:ns ## COG: lin0383 COG2378 # Protein_GI_number: 16799460 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Listeria innocua # 8 316 1 310 315 146 27.0 4e-35 MTPMEGKMKKSERLNQELFFLRTHPQFNLNQLMKTFGISKSTALRDIEALENLGVPLYVE NGRYGGYRVLNKPLLPPIYFNENEVLAIFFSLQLLKLVAESPFGHSYQQIKQKLLHSLDE PTQFKISQMSKVVYYEGIEQVEAPGNLEQLFHCILAQQVIQFNYTRYEATTKKILPTRLT ILEGYWYCSGYDVTKKAWRTYRCDFMEAIQQLNQTLDFTTEELKESYRHQQTTARTIPFK AIITEKGKEFFYKHRFDNIQLEETPTQCFLVGQIHPTETQFLANYFMGFGEEVTILEPVQ VKQAYVESIMRIQKKYQE >gi|307679255|gb|GL456472.1| GENE 62 68433 - 69680 1451 415 aa, chain - ## HITS:1 COG:lin1227 KEGG:ns NR:ns ## COG: lin1227 COG0014 # Protein_GI_number: 16800296 # Func_class: E Amino acid transport and metabolism # Function: Gamma-glutamyl phosphate reductase # Organism: Listeria innocua # 1 415 1 415 415 528 65.0 1e-150 MTDLKQLGQQAKEASYTLGLMDTRQKNTLLNKMAVAIEANAPRILQANALDLEQAATHGI SETMQDRLRLTEERITAMAEGIRQVATLPDPIGEVDKMWRNEAGLLIGQQRVPLGVIGII YESRPNVTTDAASLCFKSGNAVILRGGKEAFHSNQILVTILQEALIQEAVSPHLIQFVDD TSRETAQQLMRLNDYLDVLIPRGGANLIKTVLTTATVPVIETGTGNCHIYVDKDAQLTMA TEIIVNAKCQRPSVCNAAETLLIHQEVAEAFLPTIEKALKEFHVELRADERALAIFEEAI PATEQDWETEFLDFILAVKVVDSLDEAIQHINRYNTKHSESIISDNYFATQQFLQQVDAA AVYANASTRFTDGFEFGFGAEIGISTQKLHARGPMGLAELTSTKYVIYGNGQARS >gi|307679255|gb|GL456472.1| GENE 63 69673 - 70488 954 271 aa, chain - ## HITS:1 COG:lin1228 KEGG:ns NR:ns ## COG: lin1228 COG0263 # Protein_GI_number: 16800297 # Func_class: E Amino acid transport and metabolism # Function: Glutamate 5-kinase # Organism: Listeria innocua # 1 269 1 269 276 334 63.0 1e-91 MRNKLQQAKRIVIKVGTSSLIYPNGNINLKAIDQLAFTLSDLSNQGKEIILVSSGAIGVG LNKLNLSVRPTTIPEQQAVAAVGQAELMNIYNQRFSTYSQQMAQVLLTRDVIEYPESRNN VTNTFEQLLKMNIIPIVNENDTVAIEELDHLTKFGDNDQLSAIVCQIVQADLLVMLSDID GFFSDNPTVNKEATLFSEINEINEDLFQLAGGKGSRFGTGGMSSKLKAAERVLANQQAMI LANGKQPKIIFEILEGKDIGTLFIKGGHESD >gi|307679255|gb|GL456472.1| GENE 64 70604 - 70681 58 25 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRESWDFLGFGLFILREDDRLKEGK >gi|307679255|gb|GL456472.1| GENE 65 70814 - 71293 570 159 aa, chain + ## HITS:1 COG:L181168 KEGG:ns NR:ns ## COG: L181168 COG0756 # Protein_GI_number: 15672158 # Func_class: F Nucleotide transport and metabolism # Function: dUTPase # Organism: Lactococcus lactis # 1 157 1 149 150 156 53.0 1e-38 MKQRGFEIISKYQEEGLSVPQRATKGAAGYDFQAAETVVVPSLWKLQQAGENPKPILVKT GIKAYMPDSEYLELVSRSSNPLKRFLLLANGVGVIDRDYYNNENNEGHIMFQFLNFGYED VVIEKGERIGQGIFKPFLLADDDQVEAERTGGFGSSGQK >gi|307679255|gb|GL456472.1| GENE 66 71372 - 72742 1414 456 aa, chain + ## HITS:1 COG:SPy0236 KEGG:ns NR:ns ## COG: SPy0236 COG1066 # Protein_GI_number: 15674421 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent serine protease # Organism: Streptococcus pyogenes M1 GAS # 1 456 1 453 453 633 73.0 0 MAKKAKVQFECQSCGYVSPKYLGRCPNCGQWNSMVEEVIQDTSDRRARVSLTGKKTQPQR LSEVVPKKEPRVKTELVELNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSQQLAATGGT VLYVSGEESAEQIKLRAERLGTVNETFYLYAETDMHEISRAIEKLEPDYVIIDSIQTMTQ PDVTSVAGSVSQVRETTAELLKLAKTNGIAIFIVGHVTKEGSIAGPRMLEHMVDTVLYFE GDKHHTFRILRAVKNRFGSTNEIGIFEMQTHGLVEVMNPSQVFLEERLEGATGSSIVVAM EGSRPILVEIQALVTPTMFGNAKRTTTGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAG GVKINEPAIDLALAISIASSYKEKGTSSSECFIGEIGLTGEIRRVNSIEQRVREAQKLGF TKVYVPKNNLGGWEAPEGIEIIGVSTIGETLRKVFN >gi|307679255|gb|GL456472.1| GENE 67 72843 - 73988 1352 381 aa, chain + ## HITS:1 COG:lin0266 KEGG:ns NR:ns ## COG: lin0266 COG4956 # Protein_GI_number: 16799343 # Func_class: R General function prediction only # Function: Integral membrane protein (PIN domain superfamily) # Organism: Listeria innocua # 5 362 5 357 357 375 54.0 1e-104 MQKRIITLLMIIAGASLGISLFPMAWEMAKQGNNSWLNNNFTNGLIGAIIFFILSLGLAK YIVSAVKKIEAALNEMSLTYLLFGSIGAIIGLTIGVIISIPMYNLQIPVVNSLLPILVMI ILGYLGFRMGTTRIEEWKKVFTPRQKKANTEDTEGQMLERKVEDNFHKYKILDTSVIIDG RIYDIAKTGFLEGVLLIPNFVLYELQYIADSGDSLKRVRGRRGLDILNALQKEEGISVEM YDGDFEDISEVDSKLIKLAKLLDGVVVTNDYNLNKVSEFQNVPVLNINALANAVKPVVIP GETMNVMVVKAGTERQQGVAYLDDGTMVVVEDGQHYMNEQIEVVVTSALQTAAGRMIFAK PAHAGRGINDRKDNHPKNDKN >gi|307679255|gb|GL456472.1| GENE 68 74007 - 74480 511 157 aa, chain + ## HITS:1 COG:BS_yacN KEGG:ns NR:ns ## COG: BS_yacN COG0245 # Protein_GI_number: 16077159 # Func_class: I Lipid transport and metabolism # Function: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase # Organism: Bacillus subtilis # 1 157 1 157 158 196 60.0 1e-50 MIRIGQGFDVHQLVPQRPLIIGGVTLPYEKGLLGHSDADVLTHAIIDAILGAAGLGDIGQ LFPETDPQFKNANSVNLLTKVNEKVGRSGFTIGNIDCTILAEEPKMSPYLAEMKKNLAAS CHLAVTQVNIKATTMETMGFVGKKEGIGAIAVALLEK >gi|307679255|gb|GL456472.1| GENE 69 74533 - 75990 1716 485 aa, chain + ## HITS:1 COG:lin0269 KEGG:ns NR:ns ## COG: lin0269 COG0008 # Protein_GI_number: 16799346 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Listeria innocua # 3 485 6 488 491 635 65.0 0 MTKVRVRYAPSPTGHLHIGNARTALFNYLFARHNDGEFIIRIEDTDQKRNIEDGEKSQLE NLAWLGMEWDESPAHPGEYGPYRQSERKEIYQPLIDQLLSSNRAYKCYCTPEELEAEREA QQARGEMPHYAGTCANLTPSEQAAKEAAGLEPVIRFRVPRNTEYKFDDIVKGEITFESDN IGGDFVIQKRDGMPTYNFAVAVDDHLMKISHVLRGDDHIANTPKQLMIYEAFEWTPPVFG HMTLIINSETGKKLSKRDETILQFIEQYRELGYLPEAMFNFIALLGWSPVGEEEIFSQED LIKLFDEQRLSKSPAAFDAKKLEWINNQYMKQMDLGELTDMCIPYLVADGRVEENPSPEK IEWLKQLVSLYQPQMSYAAEIVELSNLFFNEHPVLDDAAKEFLQGETVPTVLHAFKEQLE ALDVFDVPSIKAAIKAVQKETGVKGKNLFMPIRIAVSGQMHGPELGETIELLGKEKALDH LNKVL >gi|307679255|gb|GL456472.1| GENE 70 76260 - 76799 644 179 aa, chain + ## HITS:1 COG:SPy1944 KEGG:ns NR:ns ## COG: SPy1944 COG1045 # Protein_GI_number: 15675746 # Func_class: E Amino acid transport and metabolism # Function: Serine acetyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 173 1 173 193 234 65.0 7e-62 MSWLKRSVAAVKRNDPAARTTLEVLLTYPGLHALFWHRLSHFLYRHQLFLLAKIHAQFWR FITGVEIHPGATIGAGVFIDHGMGIVIGETAEIEEDVVLFHGVTLGGTGRDTGKRHPTVK KGAMISARAQILGPVVIGERSKIGAGAVVISDIPADATAVGVPAKVVRLNGRKVEKGHD >gi|307679255|gb|GL456472.1| GENE 71 76792 - 78204 1536 470 aa, chain + ## HITS:1 COG:BS_cysS KEGG:ns NR:ns ## COG: BS_cysS COG0215 # Protein_GI_number: 16077162 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Cysteinyl-tRNA synthetase # Organism: Bacillus subtilis # 2 470 3 466 466 561 58.0 1e-160 MIKIYNTLTREKEVFTPIEARKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGYE VNYVSNFTDVDDKIIKAAKELKITAPEVAERFIKAFEEDTQALNVQPATLHPRVMDHMPD ILAFIEVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRTGVEQQLKEDP LDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLEFPHHENE IAQSEAKTGHTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQKVDPQILRFFMSTT QYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLPEDEHYLAQLNELEQRFIT EMDDDFNAANGITVVYELAKMMNQYSEQATVSEPVLVAMDKLFSGWLAIFGLFFKNEELG DAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLEDTPQGTRWRRSE >gi|307679255|gb|GL456472.1| GENE 72 78201 - 78599 345 132 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 [Bacillus selenitireducens MLS10] # 5 123 11 129 141 137 55 2e-31 MRDYKQLNGLALAYVGDAIYEIYIRDYLVSLGQTKPNVLHRMATHYVSAKAQASLMQAML AGEMLTEEEEVMYKRGRNAKSHTFAKNADVTTYRVATGFESLMGYLHLTQQKERLEELIN WCIKKVGETNEK >gi|307679255|gb|GL456472.1| GENE 73 78589 - 79446 570 285 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 45 285 7 249 255 224 46 2e-57 MKNEKSRPFKKGKKRPERSDKRSKERNPRPATAGADGTSEELADNFVFGFHATVEALQQG RGNKLFLQEDARGEKIEQLKQAAKEQAVPVKWVPKAKLDTMSDHGVHQGMVLAITAYQYL TLEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVT KASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSGTDYRRWNTQGAIALIIGNEGR GMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYRGRNPL >gi|307679255|gb|GL456472.1| GENE 74 79461 - 79991 579 176 aa, chain + ## HITS:1 COG:SPy1937 KEGG:ns NR:ns ## COG: SPy1937 COG3688 # Protein_GI_number: 15675740 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein containing a PIN domain # Organism: Streptococcus pyogenes M1 GAS # 1 173 1 172 172 149 47.0 3e-36 MKKQLLIVDGYNMIGAWPELVQLKKQERLEDARELLLSRLSNYAKYEGLEIIVVFDAQLV PGIQQTYKKYLLTVVFTKEDETADSYIERLAGEKNDRLTQVTVATSDLAEQWVVFSQGAL RTSANELYKAVQKTEKTIAIHATDIHFQQFRRNSPWNVEQLSKLSEKLEELSQKKD >gi|307679255|gb|GL456472.1| GENE 75 80077 - 80643 672 188 aa, chain + ## HITS:1 COG:lin0275 KEGG:ns NR:ns ## COG: lin0275 COG1595 # Protein_GI_number: 16799352 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Listeria innocua # 2 186 10 201 201 59 26.0 4e-09 MLEQIQQALAGDQEQFQALYGQYQPVIYKCMKKYYLKDYDTEDWLQEGRIVFFRTLERFD SEKQASLGKFFKRNFENHVHSLIRHQCAYKRRTDTLSISLEQRLESAGEELVDYLGTAAT DPLGQLMIQEKLAAFPTRLSSLEQQILNAYLKGYTLEEIAKVRGGTFSAVRSAYDRAKAK MKYTLENE >gi|307679255|gb|GL456472.1| GENE 76 80758 - 81003 340 81 aa, chain + ## HITS:1 COG:lin0228 KEGG:ns NR:ns ## COG: lin0228 COG4466 # Protein_GI_number: 16799305 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 76 1 76 85 93 60.0 1e-19 MPTTLSSIKKDLEGRIGSEIMLVAQTGRKRQTERKGILTETYPSVFVVDLDPDENSFERV SYSYSDVLTRTVEIEFIGQAV >gi|307679255|gb|GL456472.1| GENE 77 81184 - 82035 857 283 aa, chain + ## HITS:1 COG:lin0229 KEGG:ns NR:ns ## COG: lin0229 COG1947 # Protein_GI_number: 16799306 # Func_class: I Lipid transport and metabolism # Function: 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase # Organism: Listeria innocua # 1 280 1 280 291 335 59.0 7e-92 MEIIERAPAKINLGLDVLHKRVDGYHEVESIFASVDLADHLTFENLEEDIIRIETDSSFL PVDRRNHVYQAVDLLKRTYNIHKGIKIYIEKRIPVAAGLAGGSSDCAAALRGLNKLWNLG LTMDELCEIGSQIGMDVPYCLRGGTAFANGRGEKIEALPTMPQCWIVLVKPRISVSTSTV FNDLAVDELHHPDIAGLRIAIENGDYTGMTQTVGNALESVTIARHPIVQQIKDRMLKYGA DAALMSGSGPTVFALCEKKTRAQRIYNGLKGFCEEVYLVRTLK >gi|307679255|gb|GL456472.1| GENE 78 82202 - 83155 1034 317 aa, chain + ## HITS:1 COG:lin0191 KEGG:ns NR:ns ## COG: lin0191 COG0803 # Protein_GI_number: 16799268 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Listeria innocua # 12 316 9 311 312 300 55.0 2e-81 MTKIYRRLIIGVTLAISAFLLASCGQTTQSPKEKKELTVMTTFYPMYDFAKQVVGDEGEV ELLIPAGTEPHDYEPSAKDLAKITDADVFVYNSKELETWVPNVIENLDTKKVSIVEASQS IQLMQGTEEEESGEEGHEGHNHSHELDPHVWLDPVLAQKEVIAIRDALIKKYPEKKAVFE KNTAAYLEKLTALDKEYQAAFAGAKNRTFVTQHAAFGYLAKQYGLTQEPIAGISPDQEPS PSRLAELKKYIKTNNVSVIYFEASASTKVAKTLADETGVELAVLNPLESLTQKEQEAGEN YVSVMKENLAALQKSIH >gi|307679255|gb|GL456472.1| GENE 79 83181 - 83873 231 230 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 4 200 12 205 312 93 33 3e-18 MHYIEVENLTFYYDDEPVLEDVSYYVDPGEFVILTGENGAAKSTLIKSTLGLLKPTSGKI TVAKKNSVGEKISIGYIPQQVASFNAGFPSTVIELVRSGRFPRNRWFKPLTKKDHLHVEK ALKSVDMWEMRHKRIGELSGGQKQRISLARVFATDPDLFILDEPTTGMDEQSRNEFYQLL QHSAHEHGKAILMITHDHEDIKTYVDRQIRLVRKEDSKWRCFHMSEESYT >gi|307679255|gb|GL456472.1| GENE 80 84035 - 84874 1078 279 aa, chain + ## HITS:1 COG:L165709 KEGG:ns NR:ns ## COG: L165709 COG1108 # Protein_GI_number: 15674095 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Lactococcus lactis # 1 267 1 267 269 242 59.0 5e-64 MAEMLSYAFMQKAFLAALFISVIAPMLGVFLVIRRQSLMADTLSHVSLAGVALGFFFNWN PNLMTLIVVIVAAIILEYLRMIYSTYSEISIAILMSGGLALALVLMNLTGGNSAASIQSY LFGSIVTITWDQVVMLAILFVVLVLLFMLFKRPMYVLTFDEDTAHVDGLPIHWMSMLFNV ITGVAIAVMIPIAGALLISAIMVLPAAIGMRIGKGFNTVIIISVFMGLIGMLTGLTSSYY LETPPSASITLIFIGLFLLVNIYRRVVVMVQRKQKMQRN >gi|307679255|gb|GL456472.1| GENE 81 85018 - 85839 1088 273 aa, chain + ## HITS:1 COG:lin0231 KEGG:ns NR:ns ## COG: lin0231 COG0503 # Protein_GI_number: 16799308 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Listeria innocua # 1 270 1 270 272 354 65.0 8e-98 MKIRRSERLIDMTQYLLDHPHTLVSLTYFADRYQSAKSSISEDLAIVKKTFKERGTGILE TIPGAAGGVRFIPEIPYEEAEQLIMDLCDRLSEQDRLLPGGYVYLSDLLGEPNLLRQVGR IIASKYLGKQIDAVMTVATKGVPIAQAVSYYLNVPFVIVRRDSKITEGSTVSVNYVSGSS ERIEKMELSKRSLKRGSKVLVVDDFMKGGGTVNGMKSMIEEFEAELVGITVFAESKFNGR RAIDDYTSLLYVEDVDTQTKTISVVPGNYFTEK >gi|307679255|gb|GL456472.1| GENE 82 86050 - 87426 1825 458 aa, chain + ## HITS:1 COG:lin0237 KEGG:ns NR:ns ## COG: lin0237 COG1207 # Protein_GI_number: 16799314 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) # Organism: Listeria innocua # 1 457 1 457 457 542 59.0 1e-154 MENRYAIILAAGKGTRMKSKLYKVLHPVAGKPMVEHILDQVEQTEPTEIVTIVGHGAEMI KSHLGERSQYALQAEQLGTGHAVMQAQELLGGKQGTTLVITGDTPLLTAETLKNLFDYHQ GKNASATILTAHAEDPTGYGRIIRDHVGIVERIVEQKDASEEEARVQEINTGTFCFDNES LFEALAKTDTNNTQGEYYLTDIIEILKKEGKAVAAYQMADFDEAMGVNDRVALSTANKIM HRRLNEMHMRNGVTFIDPDTTYIDEGVVIGSDTVIEAGVTIKGKTVIGEDCLIGAHSEIV DSHIGNQVVVKQSVIEESVVREGADVGPYAHLRPKADVGANVHIGNFVEVKNATIDEGTK VGHLTYVGDATLGKDINVGCGVVFVNYDGKNKHQTVVGDHAFIGSATNIVAPVTIGDHAV TAAGSTITEDVPSEDLAIARARQVNKEGYAKKLPYMKD >gi|307679255|gb|GL456472.1| GENE 83 87867 - 91832 4374 1321 aa, chain + ## HITS:1 COG:SA0022 KEGG:ns NR:ns ## COG: SA0022 COG0737 # Protein_GI_number: 15925728 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Staphylococcus aureus N315 # 667 1321 113 772 772 432 41.0 1e-120 MKKLSFKKVKWGMHFLMAVALIAPSVTSTAYAVETTSQQSSEAVTSTTDSSRKQEPVITQ ETTDIKQEAPNQATSDSVKQSQETTAPTETTNLETSTAEKEETSTPQKITILGTSDVHGQ LWNWSYEDDKELPVGLSQVSTVVNQVRAQNPAGTVLIDNGDNIQGTILTDDLYNKAPLVN EKTHPMITAMNVMKYDAMVLGNHEFNFGLPLIQKIQQEATFPILSANTYNKEDGRRFVEG TTTKELDFNQDGQPDLKVGIIGLTIPHIPLWDGPRVTSLNFLPLKEEAEKAVTELKTNDQ ADIIVASIHAGQQNSDPAASADQVIENVAGIDAYILGHDHLSFTKQGAAPNGKTVPVGGP KDTGTEVVKIDLSVAKNADKWEVQEGTATIVPTTNVPADEVVKAATKEYHEQTRAFIQEE IGTATADFLPKQEIKGIPEAQLQPTAMISLINNVQKEVTGAQLSAAALFKYDSKLPAGKI SYATIFDIYKYPNTLVSVPINGENLLKYLEKQGAYYNQTQPDDLTISFNPNIRVYNYDMI SGVDYKIDISKPVGERIVDAKIDGQPLDPAKEYTIAMNNYRYGGLASQGIQVGEPIKNSD PETLRGMIVDYIKKKGTLDPEKEIERNWSIIGTNFDEKWRAKAIELVNDGALQIPTSPDG RTPNAAAITKQDVRNAGFDLDNAYTIMHTNDVHGRLEAGKGELGMARLKTFKDQENPTLM VDAGDVFQGLPISNFSKGADMAKAMNEVGYDAMAVGNHEFDFGLEIALGYKDQLNFPILS SNTYYKDGSGRVFDPYTIVEKAGKKFAIVGVTTPETATKTHPKNVEKVTFKDPIPEVEAV INEIKEKYADIQAFVVTGHLGVDETTPHIWRGDTLAETLSQTYPELDITVIDGHSHTAVE SGKRYGKVIYAQTGNYLNNVGIVTAPESEPTKKTAKLISAAELLELPENPAVKAIVYEAR TNFNAENEKVIVDYIPFTLDGQRENVRTRETNLGNLIGDAIMSYGQDAFSQPADFAVTNG GGIRADIKQGPIKVGDVIAVLPFGNSIAQIQVTGAQVKEMFEMSVRSIPQKDENGTILLD DAGQPKLGANGGFLHVSSSIRIHYDSTKPGTRLASDEGNETGQTIVGSRVLGIEIKNRQT QKFEPLDEKKQYRMATNDFLAAGGDGYDMLGGEREEGISLDSVLIEYLKSATSLRLYRAA TTIDLAQYKEPFPGERIVSISEEAYKELIGGGETPKPDPKPDPKPDPKPDPIPTPETPVA TNKQNQAGARQSNPSVTEKKKYGGFFPKTGTETETLALYGLLFVGLSSSGWYIYKRRNKA S >gi|307679255|gb|GL456472.1| GENE 84 91968 - 93647 2035 559 aa, chain + ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 22 558 22 559 559 421 41.0 1e-117 MKSKRIKGLIGLSLTTLLVLAACGGDGGAGAEKAKGGSEKTAAKQEFKVVVQQEMPSADL SLGTDTISFTALNNAYEGIYRLDDKSKPQPAGAKEKVQVSDDGLTYTVKLREEAKWSNGD PVTAADYVFSWQRTADPQTGAEYAYFLEMIENGADIVAGKKPVSELGIKANGDYELEIKL AKPTPYFDYLLAFPLFFPQHQATVEKYGKDYAASSEKAVYNGPFVLANFEGAGSDTNWTL EKNENYWDKDNVKLDKINFDVVKEAPTALNLFQDGQADDVILSGELAQQMAKDPELVIEK EARTSYLEFNQRDKNSPYNNVNLRKAISAAIDRNALVDKILGDGSVVATGLIPEGMSYSP TDDKDFADENKKIVEYSPEKAKEYWAKAKKELGITTLKMDIVADDVDSTKKLAEYIQGTL KDTLEGIDVTVSPVPFSVRIDRGSRGDFETILGGWAADYADPSSFLDLFVTGNNYNRGRF SSKAYDELIEASATRDASDPEKRWEDMVKAEKLLIGEETALAPLYQKATAHLRSKEVKGV VAHGAGAQYDYKWTYVTEE >gi|307679255|gb|GL456472.1| GENE 85 93694 - 93918 349 74 aa, chain - ## HITS:1 COG:no KEGG:EF0064 NR:ns ## KEGG: EF0064 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 74 1 74 74 104 100.0 9e-22 MLEVLKRINTLAQKEREQGLTSEEQALRVDLRQEYLRTIREQFNKTLMGVTIYDPTGEDV TPEKLKEEQQKYFD >gi|307679255|gb|GL456472.1| GENE 86 93933 - 94919 1286 328 aa, chain - ## HITS:1 COG:BS_yceB KEGG:ns NR:ns ## COG: BS_yceB COG2141 # Protein_GI_number: 16077357 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Bacillus subtilis # 20 328 3 313 313 233 42.0 4e-61 MKLSILDQLTVPKNQSASDTLQEAKELAQLAEKLGYTRIWYAEHHGSDAFASATPEILVA HIASATEKIRVGAGGIMTMHYAPFKVAETFKTLAALYPDRIDLGMGRSPGGSPLTTLALN NGQPPQLDQFDKLPEILLFLREEFPEDHLYSKISAVPREVLLPQPWLLGASKESARSAGE YGINFSFAQFIHGHLPKEVLSAYYKHFRPVTEQQEPQVSAAYFTFAADTKEEAEYHAASF EHYIFATEHGLPNKFLSPEEALAFPYSEMDKLVLEQNKQRFVIGSSQEVAEFFHQQEELG LTEAMLITPGYDKQTRFQSFERLAKELL >gi|307679255|gb|GL456472.1| GENE 87 95319 - 95894 403 191 aa, chain + ## HITS:1 COG:no KEGG:EUBREC_1256 NR:ns ## KEGG: EUBREC_1256 # Name: not_defined # Def: hypothetical protein # Organism: E.rectale # Pathway: not_defined # 10 183 13 179 352 103 33.0 3e-21 MKPFKTLDEQLAILEARGLVFSDKENAKKKLSFYGYYEIINGYKDFLLEKKQKITDHQEE CFIENSTFDHIFSLFMMDKTITSSVIDATCDVEMYVRAAISYVVSKNIGEQQIDYLNRRH YQSGKKNKNGQGYKVDQLITKFKKIIYDDIEPMKHYRGYNGNVPPWIMLKGTTFGNLANF YKFMICQIKLE