Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:06:56 2011 Seq name: gi|307679254|gb|GL456993.1| Enterococcus faecalis TX2141 genomic scaffold Scfld7, whole genome shotgun sequence Length of sequence - 4236 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 2, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 50 - 109 5.9 1 1 Op 1 . + CDS 202 - 567 464 ## gi|315146156|gb|EFT90172.1| conserved hypothetical protein 2 1 Op 2 . + CDS 546 - 1778 906 ## LACR_A11 relaxase/mobilization nuclease domain-containing protein 3 1 Op 3 . + CDS 1775 - 2398 670 ## gi|315146158|gb|EFT90174.1| conserved hypothetical protein 4 1 Op 4 . + CDS 2415 - 3017 644 ## COG2184 Protein involved in cell division + Term 3032 - 3075 1.5 + Prom 3108 - 3167 7.9 5 2 Tu 1 . + CDS 3400 - 4234 538 ## COG5527 Protein involved in initiation of plasmid replication Predicted protein(s) >gi|307679254|gb|GL456993.1| GENE 1 202 - 567 464 121 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315146156|gb|EFT90172.1| ## NR: gi|315146156|gb|EFT90172.1| conserved hypothetical protein [Enterococcus faecalis TX2141] conserved hypothetical protein [Enterococcus faecalis TX1346] # 1 121 44 164 164 188 100.0 9e-47 MDQKEVSQNQTKYIQFRLSEEQYNKLKISGETYGLSPNLYAKKLAQKSHLKKPYLEHDQA KSLLLELSKQGTNLNQIAKKLNQFDRMDNQDKELIEALRYTYGVLAQAQKGYQELWQQLQ K >gi|307679254|gb|GL456993.1| GENE 2 546 - 1778 906 410 aa, chain + ## HITS:1 COG:no KEGG:LACR_A11 NR:ns ## KEGG: LACR_A11 # Name: not_defined # Def: relaxase/mobilization nuclease domain-containing protein # Organism: L.lactis_SK11 # Pathway: not_defined # 42 330 14 292 322 96 27.0 2e-18 MATIAKISNGASAASALNYALGQDRPMHEKTEQWLQDHQLERPVELTNCRAVAVGGTNGI DPFIAKEQFDVIRQLHNQTKESNQVLRITQSFALDELNPKVQKDWQKANDLGVELAENLY PNHQSAVYTHLDGKNHVLHNHIIVNKVNLETGKKLREQKGESVQRAREMNDRLASRENWH ILEPPKERQTETEKELIAKNEYSYMDDLRERINKSLQDVSVSSYGTFKERLSDNGVILSE RGQTLSYAFLDANNKQRRARETRLGSDFGRETILHELENRARQNEFRAVEQREPAITPLE RDTQQRESEIVSLEQAIEPRKSEALKRESKINRFIDTIRQFAGRVPELTQRVTRKLKQTK EKILDDFERRFSKDMKNYEQEQQKSLEKQANRDVQSEKKPTKDHDRGMSR >gi|307679254|gb|GL456993.1| GENE 3 1775 - 2398 670 207 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315146158|gb|EFT90174.1| ## NR: gi|315146158|gb|EFT90174.1| conserved hypothetical protein [Enterococcus faecalis TX2141] # 1 207 1 207 207 372 100.0 1e-102 MNKDERLVVQVLNAYKNGKIDFSNVPELDRLVRQEVNKDFRDYQEKIEAVANQKIESAIQ EQLHRLEAENLQATILKDIQVEKQALLALKKELNEQKEQIKADRKREIVERYGILIANIV CLFCFLVVGILIGRWIYKGIWDGWGLHILYDTVMEIQPKHPYGAVVLGLGGFGLIGAGIY GSFRLMYTASTWFDQRPKIFKRIFPKK >gi|307679254|gb|GL456993.1| GENE 4 2415 - 3017 644 200 aa, chain + ## HITS:1 COG:HI0977 KEGG:ns NR:ns ## COG: HI0977 COG2184 # Protein_GI_number: 16272915 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Protein involved in cell division # Organism: Haemophilus influenzae # 25 192 20 188 191 188 54.0 5e-48 MVLDNKLGLTNSAELAKQEEILTKKRAKELFESGKIEDLEIGTFQGLSDIHQFLFQDIYD FAGKIREVNIAKGNFQFAPRIFLAQTLEYIDKLPQETFDEIIDKYSDMNVAHPFREGNGR ATRIWLDLILKNKLHKIVDWNQIDKDEYLNAMIRSTVSTNELKYLIQKALTDDLGKEQFF KGIDASYYYEGYYEIKTEDL >gi|307679254|gb|GL456993.1| GENE 5 3400 - 4234 538 278 aa, chain + ## HITS:1 COG:pli0023 KEGG:ns NR:ns ## COG: pli0023 COG5527 # Protein_GI_number: 18450306 # Func_class: L Replication, recombination and repair # Function: Protein involved in initiation of plasmid replication # Organism: Listeria innocua # 6 278 9 284 386 353 69.0 3e-97 MSIISENQKQVYTLNEIEKRKVVEHNSLITSIAKMQKTALKMFELAVSCIDTENPPKDNI IYLSKKELFSFFDVSSASKHTRFKEAIEYMQKQAFFQIKEEKNKGYEMTSIVPIPTVKWN SYNDDVMIQFNQFIMPYLIDLKAEFTQYKISELKELNSKYSLILYRWLAMNYSQYEHYSV KGGRRAEQVEAYRNPSITVKELREITDTINEYTRFQSFENRVLKNAIEEINAHTSFNVSY EKVKKGRSIDSIVFHIEKKRRADDNSYKLEDTAFQVDK Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:07:21 2011 Seq name: gi|307679253|gb|GL456994.1| Enterococcus faecalis TX2141 genomic scaffold Scfld8, whole genome shotgun sequence Length of sequence - 2850 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + LSU_RRNA 1 - 2632 99.0 # AE016830 [D:250246..253154] # 23S ribosomal RNA # Enterococcus faecalis V583 # Bacteria; Firmicutes; Lactobacillales; Enterococcaceae; Enterococcus. + 5S_RRNA 2733 - 2848 100.0 # AE016830 [D:253255..253370] # 5S ribosomal RNA # Enterococcus faecalis V583 # Bacteria; Firmicutes; Lactobacillales; Enterococcaceae; Enterococcus. Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:07:22 2011 Seq name: gi|307679252|gb|GL456995.1| Enterococcus faecalis TX2141 genomic scaffold Scfld9, whole genome shotgun sequence Length of sequence - 1094 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 49 - 84 2.5 1 1 Tu 1 . - CDS 153 - 449 374 ## gi|255976343|ref|ZP_05426929.1| conserved hypothetical protein - Prom 469 - 528 3.9 2 2 Tu 1 . - CDS 576 - 1067 416 ## COG5527 Protein involved in initiation of plasmid replication Predicted protein(s) >gi|307679252|gb|GL456995.1| GENE 1 153 - 449 374 98 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|255976343|ref|ZP_05426929.1| ## NR: gi|255976343|ref|ZP_05426929.1| conserved hypothetical protein [Enterococcus faecalis T2] conserved hypothetical protein [Enterococcus faecalis T8] conserved hypothetical protein [Enterococcus faecalis AR01/DG] conserved hypothetical protein [Enterococcus faecalis TX0635] conserved hypothetical protein [Enterococcus faecalis T2] conserved hypothetical protein [Enterococcus faecalis T8] conserved hypothetical protein [Enterococcus faecalis ARO1/DG] hypothetical protein [Enterococcus sp. 7L76] conserved hypothetical protein [Enterococcus faecalis TX0635] conserved hypothetical protein [Enterococcus faecalis TX2141] conserved hypothetical protein [Enterococcus faecalis 62] # 1 98 1 98 98 129 100.0 8e-29 MGLMTGYNMTKEEYEVTQAVLERLDKFESELEALLLDLEPLDLSRLDTVVRDETLRMFNY LSRSYILLIDTVAYKVTLEEDISCGIVKIDGQSLDEEE >gi|307679252|gb|GL456995.1| GENE 2 576 - 1067 416 163 aa, chain - ## HITS:1 COG:SAP027 KEGG:ns NR:ns ## COG: SAP027 COG5527 # Protein_GI_number: 16119227 # Func_class: L Replication, recombination and repair # Function: Protein involved in initiation of plasmid replication # Organism: Staphylococcus aureus N315 # 1 148 77 224 286 137 48.0 1e-32 MLNLSYRTENDDEIEYFVLFNGFKIDKKQKFVEVRVNQDLDYIINGLTTEFSRFELSAFT SIRSTYAKTLFRLLMQYRSTGYYVVSIEDFRELLDIPEYYQMGNIDQKVLKPAMKELHNY FENLEVTKIKAKKGNKIAKLEFTFTGLKTNKPSVTMHDWVNGE Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:08:07 2011 Seq name: gi|307679251|gb|GL456996.1| Enterococcus faecalis TX2141 genomic scaffold Scfld10, whole genome shotgun sequence Length of sequence - 142985 bp Number of predicted genes - 149, with homology - 143 Number of transcription units - 56, operones - 35 average op.length - 3.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 11/0.000 + CDS 52 - 276 206 ## COG0732 Restriction endonuclease S subunits 2 1 Op 2 . + CDS 289 - 3438 3376 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases + Prom 4551 - 4610 6.0 3 2 Op 1 7/0.000 + CDS 4774 - 6042 1406 ## COG0750 Predicted membrane-associated Zn-dependent proteases 1 4 2 Op 2 . + CDS 6114 - 7832 2336 ## COG0442 Prolyl-tRNA synthetase + Term 7859 - 7911 12.3 5 3 Op 1 . + CDS 8348 - 8878 597 ## gi|315032879|gb|EFT44811.1| conserved domain protein 6 3 Op 2 . + CDS 8891 - 9217 282 ## gi|315151113|gb|EFT95129.1| conserved hypothetical protein 7 3 Op 3 . + CDS 9276 - 9812 546 ## gi|315146009|gb|EFT90025.1| conserved domain protein 8 3 Op 4 . + CDS 9826 - 11142 1366 ## SSA_1756 hypothetical protein 9 3 Op 5 . + CDS 11156 - 11446 362 ## gi|315146011|gb|EFT90027.1| conserved hypothetical protein 10 3 Op 6 . + CDS 11450 - 11785 239 ## gi|315032874|gb|EFT44806.1| hypothetical protein HMPREF9500_01227 + Prom 11884 - 11943 8.0 11 4 Tu 1 . + CDS 12028 - 16383 5017 ## COG2176 DNA polymerase III, alpha subunit (gram-positive type) + Term 16405 - 16446 7.0 + Prom 16498 - 16557 8.5 12 5 Tu 1 . + CDS 16594 - 18051 1478 ## COG0531 Amino acid transporters + Term 18097 - 18145 12.5 + Prom 18110 - 18169 5.5 13 6 Op 1 . + CDS 18271 - 19164 749 ## EF2376 hypothetical protein 14 6 Op 2 . + CDS 19157 - 19648 437 ## EF2376 hypothetical protein + Term 19701 - 19750 13.2 + Prom 19764 - 19823 5.3 15 7 Op 1 2/0.000 + CDS 19847 - 22618 2446 ## COG1199 Rad3-related DNA helicases + Prom 22622 - 22681 5.7 16 7 Op 2 5/0.000 + CDS 22706 - 23212 580 ## COG5353 Uncharacterized protein conserved in bacteria 17 7 Op 3 5/0.000 + CDS 23251 - 24450 1194 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 18 7 Op 4 . + CDS 24485 - 25819 1568 ## COG0017 Aspartyl/asparaginyl-tRNA synthetases + Term 25828 - 25881 13.6 - Term 25823 - 25860 7.1 19 8 Tu 1 . - CDS 25866 - 26825 1063 ## COG0673 Predicted dehydrogenases and related proteins - Prom 26868 - 26927 9.3 + Prom 26830 - 26889 7.7 20 9 Op 1 . + CDS 26998 - 27516 660 ## EF2369 hypothetical protein 21 9 Op 2 . + CDS 27537 - 27755 255 ## + Prom 27776 - 27835 1.9 22 10 Op 1 . + CDS 27855 - 28496 774 ## COG1705 Muramidase (flagellum-specific) 23 10 Op 2 . + CDS 28516 - 29202 1016 ## EF2366 hypothetical protein + Term 29207 - 29246 8.3 + Prom 29451 - 29510 5.3 24 11 Op 1 7/0.000 + CDS 29601 - 30182 815 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 25 11 Op 2 . + CDS 30185 - 31504 432 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 31523 - 31556 -0.9 + Prom 31696 - 31755 6.3 26 12 Op 1 3/0.000 + CDS 31832 - 32947 1215 ## COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) 27 12 Op 2 . + CDS 32990 - 34285 1718 ## COG0015 Adenylosuccinate lyase + Term 34289 - 34334 9.9 + Prom 34365 - 34424 8.6 28 13 Tu 1 . + CDS 34469 - 34840 393 ## COG2259 Predicted membrane protein + Term 34892 - 34933 3.3 + Prom 35022 - 35081 9.0 29 14 Tu 1 . + CDS 35110 - 37716 1614 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 37722 - 37755 5.4 - Term 37700 - 37750 13.3 30 15 Op 1 . - CDS 37751 - 38230 516 ## COG3613 Nucleoside 2-deoxyribosyltransferase 31 15 Op 2 . - CDS 38254 - 39474 1195 ## COG4552 Predicted acetyltransferase involved in intracellular survival and related acetyltransferases - Prom 39621 - 39680 6.8 + Prom 39544 - 39603 7.0 32 16 Op 1 . + CDS 39721 - 41556 2009 ## COG0481 Membrane GTPase LepA + Term 41566 - 41602 3.4 33 16 Op 2 . + CDS 41631 - 42635 1398 ## COG0180 Tryptophanyl-tRNA synthetase + Term 42645 - 42697 14.2 - Term 42633 - 42685 14.2 34 17 Op 1 35/0.000 - CDS 42689 - 44422 207 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 44459 - 44518 4.0 35 17 Op 2 . - CDS 44520 - 46247 194 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 - Prom 46287 - 46346 4.2 + Prom 46167 - 46226 3.0 36 18 Tu 1 . + CDS 46362 - 47129 848 ## EF2225 MerR family transcriptional regulator + Term 47301 - 47345 0.3 37 19 Tu 1 . + CDS 47605 - 51336 3112 ## EF2224 cell wall surface anchor family protein + Term 51381 - 51433 10.6 - Term 51371 - 51419 14.9 38 20 Tu 1 . - CDS 51430 - 52083 535 ## COG1266 Predicted metal-dependent membrane protease - Prom 52282 - 52341 9.3 + Prom 52099 - 52158 8.0 39 21 Op 1 7/0.000 + CDS 52387 - 53325 917 ## COG4209 ABC-type polysaccharide transport system, permease component 40 21 Op 2 14/0.000 + CDS 53337 - 54260 988 ## COG0395 ABC-type sugar transport system, permease component 41 21 Op 3 2/0.000 + CDS 54284 - 55750 1246 ## PROTEIN SUPPORTED gi|15900035|ref|NP_344639.1| ABC transporter, substrate-binding protein + Term 55772 - 55804 1.5 42 21 Op 4 5/0.000 + CDS 55821 - 56456 561 ## COG5578 Predicted integral membrane protein 43 21 Op 5 7/0.000 + CDS 56428 - 58140 1850 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 44 21 Op 6 . + CDS 58152 - 59630 1533 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain + Term 59631 - 59685 15.1 - Term 59619 - 59673 15.1 45 22 Tu 1 . - CDS 59674 - 61815 2076 ## COG3537 Putative alpha-1,2-mannosidase - Prom 61852 - 61911 13.2 + Prom 61879 - 61938 9.9 46 23 Tu 1 . + CDS 61988 - 63088 618 ## EF2216 hypothetical protein + Term 63092 - 63142 11.2 - Term 63081 - 63127 5.0 47 24 Op 1 1/0.154 - CDS 63132 - 63614 718 ## COG3832 Uncharacterized conserved protein 48 24 Op 2 . - CDS 63636 - 64016 527 ## COG0346 Lactoylglutathione lyase and related lyases - Prom 64114 - 64173 8.7 + Prom 64129 - 64188 9.1 49 25 Tu 1 . + CDS 64228 - 65694 1803 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Term 65712 - 65757 13.2 + Prom 65740 - 65799 5.8 50 26 Tu 1 . + CDS 65822 - 66826 1300 ## EF2212 hypothetical protein + Term 66828 - 66874 12.1 - Term 66816 - 66862 11.3 51 27 Tu 1 . - CDS 66864 - 67217 447 ## COG5294 Uncharacterized protein conserved in bacteria - Prom 67422 - 67481 5.4 52 28 Op 1 . + CDS 67416 - 68120 842 ## COG2738 Predicted Zn-dependent protease + Prom 68122 - 68181 2.6 53 28 Op 2 . + CDS 68204 - 68542 577 ## EF2209 hypothetical protein + Term 68547 - 68574 0.1 - Term 68535 - 68562 0.1 54 29 Op 1 . - CDS 68570 - 69415 734 ## COG0384 Predicted epimerase, PhzC/PhzF homolog 55 29 Op 2 . - CDS 69472 - 70323 639 ## COG2508 Regulator of polyketide synthase expression - Prom 70412 - 70471 4.0 + Prom 70259 - 70318 3.5 56 30 Tu 1 . + CDS 70401 - 70922 626 ## COG0590 Cytosine/adenosine deaminases - Term 70998 - 71030 2.3 57 31 Op 1 12/0.000 - CDS 71116 - 71958 567 ## COG0582 Integrase - Prom 71986 - 72045 2.1 58 31 Op 2 . - CDS 72057 - 72251 263 ## COG0582 Integrase - Term 72283 - 72315 -0.1 59 31 Op 3 . - CDS 72318 - 72890 565 ## Cbei_4244 cell wall binding repeat-containing protein 60 31 Op 4 . - CDS 72951 - 73151 191 ## SP70585_0029 phage protein 61 31 Op 5 . - CDS 73193 - 73747 589 ## gi|282598715|ref|YP_003358824.1| hypothetical protein PHIEF11_0034 62 31 Op 6 . - CDS 73835 - 74308 387 ## EF1276 hypothetical protein 63 31 Op 7 . - CDS 74325 - 74897 411 ## COG1396 Predicted transcriptional regulators - Prom 74917 - 74976 9.1 64 32 Op 1 . + CDS 75056 - 75289 222 ## SAOUHSC_02234 repressor-like protein 65 32 Op 2 . + CDS 75371 - 76090 546 ## COG3645 Uncharacterized phage-encoded protein 66 32 Op 3 . + CDS 76106 - 76354 149 ## gi|282598765|ref|YP_003358829.1| putative phage excisionase protein 67 32 Op 4 . + CDS 76376 - 76549 265 ## gi|256961389|ref|ZP_05565560.1| predicted protein 68 32 Op 5 . + CDS 76546 - 76671 130 ## 69 32 Op 6 . + CDS 76656 - 76811 223 ## gi|307286466|ref|ZP_07566567.1| conserved domain protein 70 32 Op 7 . + CDS 76868 - 77104 337 ## gi|282598707|ref|YP_003358833.1| hypothetical protein PHIEF11_0043 71 32 Op 8 . + CDS 77105 - 77782 657 ## LM5578_2513 hypothetical protein 72 32 Op 9 . + CDS 77782 - 78705 782 ## JDM1_0973 hypothetical protein + Prom 78719 - 78778 1.9 73 33 Op 1 . + CDS 78804 - 79382 298 ## MPTP_1437 hypothetical protein 74 33 Op 2 . + CDS 79387 - 80343 815 ## LLKF_1041 phage replisome organiser 75 33 Op 3 . + CDS 80347 - 80871 419 ## EF2127 hypothetical protein + Prom 80900 - 80959 4.6 76 34 Op 1 . + CDS 80999 - 81226 258 ## EF1438 hypothetical protein 77 34 Op 2 . + CDS 81283 - 81747 179 ## EF2124 methyltransferase, putative + Prom 81909 - 81968 6.3 78 35 Op 1 . + CDS 82090 - 82500 358 ## gi|315146082|gb|EFT90098.1| phage conserved hypothetical protein TIGR01671 79 35 Op 2 . + CDS 82497 - 82664 207 ## gi|282598733|ref|YP_003358843.1| hypothetical protein PHIEF11_0053 80 35 Op 3 . + CDS 82657 - 83262 630 ## EF2118 hypothetical protein 81 36 Op 1 . + CDS 83396 - 83761 271 ## EF1444 hypothetical protein 82 36 Op 2 . + CDS 83762 - 83944 285 ## EF2830 hypothetical protein + Prom 83959 - 84018 4.0 83 37 Op 1 . + CDS 84127 - 84327 237 ## EF2829 hypothetical protein 84 37 Op 2 . + CDS 84320 - 84409 91 ## 85 37 Op 3 . + CDS 84472 - 84888 359 ## EF2024 ArpU family transcriptional regulator + TRNA 85113 - 85185 80.1 # Asn GTT 0 0 + Prom 85113 - 85172 78.3 86 38 Op 1 . + CDS 85352 - 85801 351 ## gi|282598758|ref|YP_003358851.1| SbcC domain protein + Term 85806 - 85836 1.2 87 38 Op 2 . + CDS 85856 - 86377 470 ## COG1475 Predicted transcriptional regulators 88 38 Op 3 . + CDS 86364 - 86972 305 ## YpsIP31758_2230 hypothetical protein + Prom 87029 - 87088 2.5 89 39 Op 1 . + CDS 87109 - 87297 235 ## gi|256617869|ref|ZP_05474715.1| predicted protein 90 39 Op 2 . + CDS 87342 - 88262 548 ## Psyr_2837 hypothetical protein 91 39 Op 3 . + CDS 88310 - 89104 404 ## COG5484 Uncharacterized conserved protein 92 39 Op 4 . + CDS 89097 - 90551 938 ## Cbei_1636 hypothetical protein 93 39 Op 5 . + CDS 90556 - 92169 1106 ## LEGAS_1590 phage portal protein 94 39 Op 6 . + CDS 92175 - 93113 642 ## COG5585 NAD+--asparagine ADP-ribosyltransferase 95 39 Op 7 . + CDS 93114 - 93383 156 ## gi|282598771|ref|YP_003358795.1| hypothetical protein PHIEF11_0005 96 39 Op 8 . + CDS 93409 - 93507 148 ## 97 39 Op 9 . + CDS 93476 - 93754 283 ## CLJ_B1819 gp9 + Prom 93797 - 93856 2.7 98 40 Op 1 . + CDS 93884 - 94525 726 ## BH3529 hypothetical protein 99 40 Op 2 . + CDS 94538 - 94879 414 ## LSEI_1928 hypothetical protein 100 40 Op 3 . + CDS 94902 - 95915 1088 ## LCABL_13300 hypothetical protein 101 40 Op 4 . + CDS 95989 - 96321 335 ## LACR_1139 hypothetical protein 102 40 Op 5 . + CDS 96318 - 96653 290 ## LACR_1140 hypothetical protein 103 40 Op 6 . + CDS 96628 - 97008 250 ## M28_Spy0985 phage protein 104 40 Op 7 . + CDS 97005 - 97394 235 ## LACR_1767 hypothetical protein 105 40 Op 8 . + CDS 97410 - 98003 652 ## MPTP_1482 phage tail protein 106 40 Op 9 . + CDS 98019 - 98477 636 ## gi|307292403|ref|ZP_07572259.1| hypothetical protein HMPREF9509_02696 + Term 98489 - 98524 3.3 107 41 Tu 1 . + CDS 98532 - 98882 395 ## SPy_0992 hypothetical protein + Prom 98886 - 98945 2.2 108 42 Op 1 . + CDS 98975 - 99232 156 ## gi|282598753|ref|YP_003358808.1| hypothetical protein PHIEF11_0018 109 42 Op 2 . + CDS 99248 - 102655 3459 ## M28_Spy1236 phage protein 110 42 Op 3 . + CDS 102656 - 103585 805 ## EF1289 tail protein, putative 111 42 Op 4 . + CDS 103602 - 105617 1354 ## EF1290 structural protein, putative 112 42 Op 5 . + CDS 105618 - 105791 296 ## gi|256961421|ref|ZP_05565592.1| predicted protein 113 42 Op 6 . + CDS 105802 - 107565 1694 ## EF1291 hypothetical protein + Term 107600 - 107636 4.0 114 43 Op 1 . + CDS 107645 - 107866 223 ## gi|256961423|ref|ZP_05565594.1| predicted protein 115 43 Op 2 . + CDS 107863 - 108066 262 ## EF2803 holin 116 43 Op 3 . + CDS 108071 - 109330 1429 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) 117 43 Op 4 . + CDS 109343 - 109723 404 ## gi|315172153|gb|EFU16170.1| hypothetical protein HMPREF9519_02873 + Prom 109726 - 109785 1.5 118 43 Op 5 . + CDS 109812 - 111077 1091 ## COG0739 Membrane proteins related to metalloendopeptidases + Term 111089 - 111130 7.0 119 44 Op 1 . - CDS 111080 - 111160 60 ## 120 44 Op 2 . - CDS 111141 - 112643 1093 ## BBPR_0060 hypothetical protein - Prom 112814 - 112873 11.8 - Term 112770 - 112813 -0.8 121 45 Tu 1 . - CDS 113009 - 113590 313 ## EF2795 LysM domain-containing protein - Prom 113654 - 113713 12.5 - Term 113909 - 113947 5.4 122 46 Tu 1 . - CDS 113961 - 114341 526 ## EF2205 hypothetical protein - Prom 114375 - 114434 6.3 - Term 114464 - 114516 15.8 123 47 Tu 1 . - CDS 114601 - 115839 1620 ## COG2309 Leucyl aminopeptidase (aminopeptidase T) - Prom 115874 - 115933 5.1 + Prom 115979 - 116038 4.8 124 48 Op 1 . + CDS 116090 - 116662 707 ## COG1309 Transcriptional regulator + Term 116706 - 116764 4.7 + Prom 116717 - 116776 2.4 125 48 Op 2 . + CDS 116820 - 117293 519 ## COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) + Term 117305 - 117355 13.0 - Term 117293 - 117343 9.2 126 49 Tu 1 . - CDS 117368 - 117811 689 ## COG0716 Flavodoxins - Prom 117839 - 117898 6.0 + Prom 117900 - 117959 5.5 127 50 Op 1 2/0.000 + CDS 117986 - 118750 1011 ## COG0024 Methionine aminopeptidase 128 50 Op 2 . + CDS 118766 - 119674 851 ## COG1295 Predicted membrane protein 129 50 Op 3 . + CDS 119703 - 119804 69 ## 130 50 Op 4 1/0.154 + CDS 119785 - 120921 909 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase + Term 120968 - 121033 4.2 + Prom 120955 - 121014 8.4 131 51 Op 1 . + CDS 121049 - 121831 840 ## COG1216 Predicted glycosyltransferases 132 51 Op 2 . + CDS 121831 - 122658 773 ## EF2196 glycosyl transferase, group 2 family protein 133 51 Op 3 1/0.154 + CDS 122662 - 123375 706 ## COG0463 Glycosyltransferases involved in cell wall biogenesis + Prom 123386 - 123445 5.6 134 52 Op 1 13/0.000 + CDS 123498 - 124364 1067 ## COG1209 dTDP-glucose pyrophosphorylase 135 52 Op 2 11/0.000 + CDS 124377 - 124949 882 ## COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 136 52 Op 3 11/0.000 + CDS 124974 - 126002 1186 ## COG1088 dTDP-D-glucose 4,6-dehydratase + Term 126040 - 126079 1.0 137 52 Op 4 . + CDS 126095 - 126937 1099 ## COG1091 dTDP-4-dehydrorhamnose reductase 138 52 Op 5 . + CDS 126996 - 127721 702 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 139 52 Op 6 . + CDS 127721 - 128071 453 ## EF2189 hypothetical protein - Term 127964 - 128006 -0.2 140 53 Tu 1 . - CDS 128145 - 128486 345 ## EF2184 hypothetical protein + Prom 128604 - 128663 7.0 141 54 Op 1 26/0.000 + CDS 128734 - 129528 785 ## COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component 142 54 Op 2 4/0.000 + CDS 129541 - 130758 1435 ## COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component 143 54 Op 3 11/0.000 + CDS 130748 - 133891 3176 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 144 54 Op 4 . + CDS 133903 - 136044 2255 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 145 54 Op 5 . + CDS 136078 - 138048 1863 ## EF2179 hypothetical protein 146 54 Op 6 . + CDS 138077 - 139378 878 ## EF2178 hypothetical protein + Prom 139403 - 139462 2.7 147 55 Tu 1 . + CDS 139484 - 140881 1230 ## COG2148 Sugar transferases involved in lipopolysaccharide synthesis + Term 140882 - 140911 2.1 + Prom 140911 - 140970 5.1 148 56 Op 1 1/0.154 + CDS 141002 - 141835 879 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 149 56 Op 2 . + CDS 141851 - 142693 580 ## COG3475 LPS biosynthesis protein + Term 142716 - 142759 8.6 Predicted protein(s) >gi|307679251|gb|GL456996.1| GENE 1 52 - 276 206 74 aa, chain + ## HITS:1 COG:L0310 KEGG:ns NR:ns ## COG: L0310 COG0732 # Protein_GI_number: 15672634 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Lactococcus lactis # 29 74 362 407 407 69 71.0 1e-12 MLLSYSLKKYITGGAQPQLTRDVLLKVPIIIPSYNEQFKIGTFFKQLDDTIALQQRKLDL LKETKKGFLQKMFV >gi|307679251|gb|GL456996.1| GENE 2 289 - 3438 3376 1049 aa, chain + ## HITS:1 COG:SPy1904 KEGG:ns NR:ns ## COG: SPy1904 COG0610 # Protein_GI_number: 15675717 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Streptococcus pyogenes M1 GAS # 6 1045 6 990 992 541 34.0 1e-153 MKISHREEAEVEEQLIRVLGEGHNQWTYRPDLKSEEDLWVNLRQKIISNNQAELNDSPLT DKEFETIKTELLLRTKIPFDAAKWLKGENGMARITIEREDSQLGSVSLILYSNQDIGGGI STYEVVHQIAKRGSNIEARDRRFDVTLLINGLPIVQIELKQVTAKDGVYQAFNQIKKYAE EGMFRNNIFSTLQLFVVSNEQTTRYFANALPKDLHPKFLFSWRTKDNEKVENLYEFCKQV LNIPDAHRLIADYTIVSEDQDNKTLMVLHPYQVHAIQALFIAANKHQSGYVWHATGSGKT LTSFVSTKLLARKSGIDRTIMLVDRKDLDNQTTTEFTKFASEFNTGISSGNAKANSLIVG TGSAKELSETLLADANANVVIITTRQKLDAALKYAKKQEEKKGTNRFQKLMGQHIVFVVD ECHRALSAENMEEIKKMFPKSTWFGFTGTLIFPENRKQAKGQLARTTHDQYGEVLHTYTI KNALEDGSVLGFQVEHENTVEPTSLENKIYRKLKEVETYAEYSSEQINRMIDQMESIKKE SYLDPAVFEVDEHIQKVIHKMFRPDNAYTKFDFRNGRPTKSAILTTSSIDMAKKYYRAIK EMTKEPEWLTKEFPNQPIREGRTMEDPDFPRIAITYSLEENSRDSSVQQEEMQKIIEEYN QYYDTSWSLADIERYNGDINNRLARKRAEFKQFGKQIDLVIVVDRLLTGFDAPTIQTLFV DRNLEYAGLIQAFSRTNRTYPDKTKGLIVTFRKPATMEKNVEDATKLYSEAKEESGLICP SYQESKKRFKQAYGKLKEVSSMESIDEHTPLEIRIEYVKAFQELNRAYESLVTYDDYNDD IVQSSTLNNQIQLLEEQIGVYETVKGSLIEEEPEKEGEDFSTIEFYSENTTKLYDIDSTY IDQLLGTYAANSSDARDEIEKALAKLNKTEGVKEVYRQILNAFDVGTLDSNEDIFVIKRR YFTQASDDLIHVFSNEWFVSEKELHASNLQYMPGEDPIPNMKAIINSKDYEGYKANHPEA KPFKYPQEMKRAWRKMLDDELIPLENELR >gi|307679251|gb|GL456996.1| GENE 3 4774 - 6042 1406 422 aa, chain + ## HITS:1 COG:SP0263 KEGG:ns NR:ns ## COG: SP0263 COG0750 # Protein_GI_number: 15900197 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane-associated Zn-dependent proteases 1 # Organism: Streptococcus pneumoniae TIGR4 # 1 422 1 418 419 414 51.0 1e-115 MKTIITFIIVFGILVLVHEFGHFYFAKRAGILVREFAIGMGPKIFAHRGKDGTTYTIRLL PIGGYVRMAGMGEDMTEITPGMPLSVELNAVGNVVKINTSKKVQLPHSIPMEVVDFDLEK ELFIKGYVNGNEEEETVYKVDHDATIIESDGTEVRIAPLDVQFQSAKLSQRILTNFAGPM NNFILGFILFTLAVFLQGGVTDLNTNQIGQVIPNGPAAEAGLKENDKVLSINNQKIKKYE DFTTIVQKNPEKPLTFIVERNGKEEQLTVTPEKQKVEKQTIGKVGVYPYMKTDLPSKLMG GIQDTLNSTTQIFKALGSLFTGFSLNKLGGPVMMFKLSEEASNAGVSTVVFLMAMLSMNL GIINLLPIPALDGGKIVLNIIEGVRGKPISPEKEGIITLIGFGFVMVLMVLVTWNDIQRF FF >gi|307679251|gb|GL456996.1| GENE 4 6114 - 7832 2336 572 aa, chain + ## HITS:1 COG:lin1356 KEGG:ns NR:ns ## COG: lin1356 COG0442 # Protein_GI_number: 16800424 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Prolyl-tRNA synthetase # Organism: Listeria innocua # 1 564 1 564 568 727 62.0 0 MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREE FEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRD EINSYKRLPLNLYQIQTKYRDEKRPRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKA YSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTICYSTESDYAANLEMATSLY TPKKSHETQLDLEKIATPEVGTIAEVANFFEVEPQRIIKSVLFIADEEPVMVLVRGDHDV NDVKLKNFLGADFLDEATEEDARRVLGAGFGSIGPVNVSEDVKIYADLAVQDLANAIVGA NEDGYHLTNVNPDRDFQPISYEDLRFVQEGDPSPDGNGVLAFTKGIEIGHIFKLGTRYSD AMGATVLDENGREKSVIMGCYGIGVSRLLSAIVEQNADERGINWPTGIAPFDLHVVQMNV KDEYQTKLSQEVEAMMTEAGYEVLVDDRNERAGVKFADADLIGCPIRITVGKKAVDGVVE VKIKRTGEMLEVRKEELESTLSILMNTTSEVE >gi|307679251|gb|GL456996.1| GENE 5 8348 - 8878 597 176 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315032879|gb|EFT44811.1| ## NR: gi|315032879|gb|EFT44811.1| conserved domain protein [Enterococcus faecalis TX0017] conserved domain protein [Enterococcus faecalis TX2141] # 6 176 16 186 186 296 100.0 3e-79 MKKGKLSTLAAVVLIIIGIGGKQYMDKKAIEKDYQQGIGLIQKYVSNYLVENYEGIEKIE WQGVGVEWRNAKGYGPSLLGNYVNTRVNIFVSEDKYFSVRFTLTDETDYDNNLKKYVKAS SLNSENIDFSIKSDLENATYDLKQSEKESFTKLEKSIFGSDNAKIIYNLEIYELNY >gi|307679251|gb|GL456996.1| GENE 6 8891 - 9217 282 108 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315151113|gb|EFT95129.1| ## NR: gi|315151113|gb|EFT95129.1| conserved hypothetical protein [Enterococcus faecalis TX0012] # 1 108 1 108 190 182 97.0 8e-45 MSREITTEILANAIDETKDTVQTKNTNVRLKIQGKKTDFKIIHKAASTQSSQLNAMAIAP LDDQGKPDYNNVTVVYAGTNSFGDEGKKGFETAGTAFVGGFSSEYQEA >gi|307679251|gb|GL456996.1| GENE 7 9276 - 9812 546 178 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315146009|gb|EFT90025.1| ## NR: gi|315146009|gb|EFT90025.1| conserved domain protein [Enterococcus faecalis TX2141] # 5 178 16 189 189 320 100.0 3e-86 MKKGRWWLIGLATALLIIIGIGGKQYMDKKAIEKDYQQGIDLIQKYVSNYLVENYEGIEK IEWQGVGVEWRNAKGYGTSLLGNYVNSEIRVYVSKDDYFMMYFRLTDKTEYDDELKKYVV LDSLNDKNTDVAVRVGLRNATYDLNQAEKKVFERFRKSDKGRPNAKVVYNLEIHELIY >gi|307679251|gb|GL456996.1| GENE 8 9826 - 11142 1366 438 aa, chain + ## HITS:1 COG:no KEGG:SSA_1756 NR:ns ## KEGG: SSA_1756 # Name: not_defined # Def: hypothetical protein # Organism: S.sanguinis # Pathway: not_defined # 19 437 13 504 504 109 25.0 2e-22 MSNDEITTETLAKAIDSTKETVQLNSDTVVLEIQDKTQDFKIIHKAASTQSSQLNAMAIA PLDDQGKPDYNNVTVVYAGTNSFGDEGKKGFETAGTAFVGGLSEEYQEAENFLKQTQQKI ASQNGTITDVAGFSQSGGYMMKMAGKYGQEMGFRTTSFDDWGRNQFERLTTSEKQWLQEN PEFLIRYQNDSWAALSGRDSKYGTLSSISGVGEHNTLANYFDGDDLDLDRLAKDGIFAPN MTLEQVKLAAKVWAKKNGDWDPTTNNEAEAKKRVQEYLELYGEFAQTNANLEKLKSGTDK AIRSLHTKIASASGGQKIKLRADLALQVANQARTIGEEAEKLLKQSQQDTEQALAEISKE ILTSANEIRQYLSYSEVQAMIAPYEKSRLWDEAQASHNRKQVQQYNQKLMTFSEKLTTAA KNIQEYDRQAGNQLFTQK >gi|307679251|gb|GL456996.1| GENE 9 11156 - 11446 362 96 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315146011|gb|EFT90027.1| ## NR: gi|315146011|gb|EFT90027.1| conserved hypothetical protein [Enterococcus faecalis TX2141] # 1 96 1 96 96 125 100.0 8e-28 MDEPERELQLELERIQKMQERQAIQAVITAKQTRIATIKQTSTQTIKELSKLMSKQSKTA LPSSLKGAFQGQVADAASHYLKAIPDANLKTPAKGG >gi|307679251|gb|GL456996.1| GENE 10 11450 - 11785 239 111 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315032874|gb|EFT44806.1| ## NR: gi|315032874|gb|EFT44806.1| hypothetical protein HMPREF9500_01227 [Enterococcus faecalis TX0017] # 1 111 1 111 111 132 96.0 7e-30 MTPEEKRRSYQMIEDSYYQEKRRINQQQQHVSAEIQRFRQQTNQLVDKVAYFTRNDTWDK RMFHHQIATSLDEVKRTENRFVSILEETEQTMRKNYRKEIEKLEEMARMDL >gi|307679251|gb|GL456996.1| GENE 11 12028 - 16383 5017 1451 aa, chain + ## HITS:1 COG:lin1357 KEGG:ns NR:ns ## COG: lin1357 COG2176 # Protein_GI_number: 16800425 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit (gram-positive type) # Organism: Listeria innocua # 3 1448 6 1444 1444 1832 61.0 0 MTEKARDLFDKLMTQIQLDDTAKEHPLIQNGRIDKVIVHQQSRLWEFHLSFDELMPVMLY QTFMQQLELAFQQIAQVSVQITTNQTTFTEEQLTDYWQLALLNSQCNTPLVQKVLKTQTP QFEDRKIILPVDNEAVIPYLKQQYLPIIEELYFSYGFPKFHIEPKMDQQQAAEVLKKFEE QKLEQAAAFQQQAAESLVKHEQMKKEKQQQAPAFDGPIRLGRNIPNDEPIMPMGNILEEE RRITIEGFIFDKEVRELRSKRKILILKITDYTSSFVVKKFSNGEKDEQVFDAIQPQSWIR VRGSVQEDTFMRDLVMNAQDLMEVAHAPRKDYAPEGEKRVELHMHSNMSTMDATNKVGDL VAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILYGVEANIVDDGVPIAYNEEHIE LTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVIETFEQFIDPGHPLSQTTINLTGI TDEMVRGSKSEEEVLRMFKEFSEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLE LSRFLYPHFKSHRLNTLSKKFGVNLEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHDD LNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLISMSNVDYFFRVPRIPRSQLSKLRE GLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEVMPKPVYAPLIEQELVKNEADLEE IISNLVKIGDELGKLVVATGNVHYLNEEDAIYRKILVGSMGGANPLNRHSLPKVHFRTTD EMLTEFQFLGQDVAKRIVVENPNKVADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRAR ELYGDPLPEIVEKRLEKELNSINGNGFSVIYLISQKLVHKSNEDGYLVGSRGSVGSSFVA TMTGITEVNPLAPHYYCPECQYSEFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFET FLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGYER DHNLHLRGAEIDRLAKGSTGVKRTTGQHPGGIIVIPDYMDVYDFTPIQYPADDQEAEWKT THFDFHSIHDNILKLDILGHDDPTVIRMLQDLSGIEPKTIPTDDPEVMRIFEGPDVLGVD AEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHGTDVWLGNAEELIRRG EANLAEVIGCRDDIMVYLIHAGLDSGMAFKIMETVRKGQWNKIPDELRDTYLNAMKENNV PDWYIDSCSKIKYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQ GKEAVKARMKEITDKGMDASTKEKNLLTVLELCNEMLERGYKFGMIDLYKSDAENFVIEG DTLIAPFRAVPSLGLNVAKAIVAAREEQPFLSKEDLATRGKVSKTLIEYMNENGVLKDLP DENQLSLFDML >gi|307679251|gb|GL456996.1| GENE 12 16594 - 18051 1478 485 aa, chain + ## HITS:1 COG:L119780 KEGG:ns NR:ns ## COG: L119780 COG0531 # Protein_GI_number: 15673092 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Lactococcus lactis # 1 477 1 477 488 682 76.0 0 MDKKQLRWFTVGVIAFNMVWGLGNVVNNYAQQGISVVTSWLLILVLYFIPYALIVGQLGS TFKDSNGGVSSWVQNTSTKRLAYYAAWTYWVVHIPYLAQKPQAILIALGWAVQGNGNLVN TMPIVTVSFISLIIFLVFLLLSTKGLTTLKVIGGLAGTAMFVMSILFILLAVGAPFINST VEFATPNMSQVSTYIPKFDFSYFTTVSMLVFAVGGAEKISPYVNATKNPAKEFPKGMIFL AAMVGLSAVLGSFAMGMLFSSDNIPKDLMANGAYSAFQKLGAYYGVGNLLMIVYALTNTV GQVAALAFSIDAPLKILLAEADPEFVPSWLRKRTKKGTLINGYLLTGILVSIIIALPMFG LKDMNEVVKWLTNLNSVVMPMRYLWVFFAYMLLNKAYKQFNSEYKFVKNPKIGFVFGLWC FLFTAFACILGMVPKFEYASDPQGWLFQLASNIVTPIVLILLGMILPAIARREKKDTILP IDSAE >gi|307679251|gb|GL456996.1| GENE 13 18271 - 19164 749 297 aa, chain + ## HITS:1 COG:no KEGG:EF2376 NR:ns ## KEGG: EF2376 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 290 1 269 437 409 85.0 1e-113 MTKTLETQPEEKTVFLCKETNPDFLGREIYADNVETPYNFYLIRKLYLAKEYQNLAEGEQ FFEALCESWDESEQFEELIVKKIYVYVETELMYYTVYFGSFEPTTRDLRSALKQWMYEIP TTKNKKTVRMNETNVQVVPQENQLTELAGEIAVLREMLTLLKENLASLNEAVNQTRNPVI SRQIKTIHLKRASPVIAAEQASLKVSEDTNLEQPDVNLSPDNLENQEGETTVATSEAVLP VNKLALEEPAKEPVLSETVPIKEAQPEKKKRKPAEYCGKTFIYFSTRNRKKLVKFSE >gi|307679251|gb|GL456996.1| GENE 14 19157 - 19648 437 163 aa, chain + ## HITS:1 COG:no KEGG:EF2376 NR:ns ## KEGG: EF2376 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 163 275 437 437 249 97.0 2e-65 MNKSAEKEEEQKSEKEAVSMESEKENSSSRTIPADFQRQLDELEEEIYRRFMSRQLEDTD GNQAVPKITIEKRQLEAQMIEAKAFSQSFKQVQKKKAGDVRICNQLSCMKLEKGLDKFLD EVTEYVEKRTLFNKKVRCPLPVIRELEGYGQLNQYMQKILDCY >gi|307679251|gb|GL456996.1| GENE 15 19847 - 22618 2446 923 aa, chain + ## HITS:1 COG:BH1691_2 KEGG:ns NR:ns ## COG: BH1691_2 COG1199 # Protein_GI_number: 15614254 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Bacillus halodurans # 255 921 36 716 716 309 30.0 1e-83 MKDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIANFATDVNPNQVVPKQIQSLTG ISNTQVQKAPYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTV ELAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK IAELSQQTARETSAFIQQTYEQMKKQVTPLNPAYQVVSGIALRKKEVPLFEETFYQTSTY PKTKKAKEKLFGERFAYRAEQSRMMNLVYDHFTEGTTKDLFIEAATGTGKTLGYLLPMSY LATPEKPVIISTVSIVLQNQLVEKDLPLANQICQGKLRGIVIKSHRHYLDLQRFKATLNQ PTPQKQYALYQMGVLVWLLETETGDLDELQLTNLNHLFWKEVTHRGLDFLSKKDELYEVD FLRHLYKKVAQSNVLIVNHAFLAQESLRKQPLLPESPWLIIDEAHHLPDIASRMASERVN SVILKKQVTHFIEKEQLFVALQQIFQQFSEEQRFVKIYQQGLLDFVDEWQDFLFELHRLF SKTQKRIDHQELLLTKERIDYLSAAGEKHSQTLQLLLQELLTIQSKLQQTIMSQLETFSL ADRIVFVRLFQFFDEIERIHHCFTIYLDDWRPRWVKEYLPQNEDHGLIEIHDLEASLLPE TKWYPRYERIIYTSGTLKFGNNKKYLPQRLGLTEVTFKTLPTPYNYAENARVYVPEEAVA IQNASSYEMGQYISDTIEKLMAQEERSMLVLFTSHELLSTVYHQVQPRLLEKGQEVLAQG ISGSREKILKRFSNGKPNVLLGADSFWEGVDLPGTALQLLIVTRLPFENPKRPLVQAKYA YLEAEGIQPFAQEAVPKAALRLRQALGRLIRSEEDRGALLILDRRLVTAKYGKRLIKAFP KGLSVKEAPMPEILEELKEFLNK >gi|307679251|gb|GL456996.1| GENE 16 22706 - 23212 580 168 aa, chain + ## HITS:1 COG:lin2012 KEGG:ns NR:ns ## COG: lin2012 COG5353 # Protein_GI_number: 16801078 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 32 160 35 165 173 76 36.0 2e-14 MEELEEKKEKKRITVLVTLLAILLAILVTIIIFFVRTNQPMAQAEKEATAIAKTSANLET VDKFYWFTRKNTYFTLTGKNDKGTEIVVIVPKSGEKVTVLNQKDGQTEQQITDIVAKAHP DESVMKATLGLYDKRPAWEVVTENDQGVLTYYLMSFDKGEEINVVKDI >gi|307679251|gb|GL456996.1| GENE 17 23251 - 24450 1194 399 aa, chain + ## HITS:1 COG:SP1544 KEGG:ns NR:ns ## COG: SP1544 COG0436 # Protein_GI_number: 15901387 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 390 1 390 395 525 66.0 1e-149 MNVSNRAQQLTPSVTLAAAAKAKALKAKGVDVLSLTVGEPDFVTPKNIQKAAIASIEDGR ASYYTPSGGIPELKQAIVSYVEREYQLRYQPKQVIVTDGAKYALYLLFQAILNVGDEVII PVPYWVSYGEQVKLAEGKPVFVSSTQEQSFKVSVAQLEAVRTDKTKAIILNSPSNPTGII YTEEELRQISEWAVAHNILIIADDIYGRLVYNGHRFTPIATISEAIRQQTIIINGVSKTY AMTGWRIGFAVGDEKIIQAMTQLASQSTSNPVAVSQYAAIEALTGEQSTVEDMRQAFEKR LNHIYPKVAALPGVSLIKPEGAFYLFPNVKKTLEICGYDNVTNWVEDLLQEAHVALVTGE GFGAPEHVRMSYATDLMTLEKAIERMNDFIEKKRIQHNA >gi|307679251|gb|GL456996.1| GENE 18 24485 - 25819 1568 444 aa, chain + ## HITS:1 COG:L0345 KEGG:ns NR:ns ## COG: L0345 COG0017 # Protein_GI_number: 15673810 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl/asparaginyl-tRNA synthetases # Organism: Lactococcus lactis # 4 444 5 447 447 666 71.0 0 MEQIQIIDSNKHVGETVKIGAWIANKRSSGKIAFLQLRDGTAFFQGVVFKPNFIEAFGEE AGTEKFQEIKHLSQETAVMVTGVIKEDSRSKFGYEMDITDLEVVGASEDYPITPKEHGTD FLMDHRHLWLRSSKQHAIMLVRNEIIRATYEFFNEQGFIKIDSPILTGSAPEGTTELFET DYFGQPAFLSQTGQLYAEAGAMAFGKVFTFGPTFRAEKSKTRRHLTEFWMIEPEMAYTTH EESLDIQEAYVKHLIKSVLKNQQYPLDVLERDTALLEKYVSEPFKRITYDDAIELLQKEE ANNDYDHIEWGEDFGSPHETFISNYYGVPTFILNYPKAIKAFYMKPHPTREDVVICADLI APEGYGEIIGGSERATDYDYLKEKVAEFGLSEEEYSWYLDLRKYGSVPHSGFGLGLERAV TFITGNEHIREAIPFPRMLNRIYP >gi|307679251|gb|GL456996.1| GENE 19 25866 - 26825 1063 319 aa, chain - ## HITS:1 COG:CAC3400 KEGG:ns NR:ns ## COG: CAC3400 COG0673 # Protein_GI_number: 15896641 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Clostridium acetobutylicum # 7 317 5 315 322 321 50.0 2e-87 MTKKLYQWGIVGLGGIAHEFASTFKQETSQLAAVASRTLTKAEQFAADYSIPKAYGSYEE LLADETIDVVYIAVPNKQHAEHILKALQAGKHVLCEKAITMNAAELKQALAVAEKNDLIL AEAMTIFNMPLYDELRRLMDAGKFGQLKMIQAPFGSYKEPDPKNRFFNPDLAGGALLDIG TYAVSFARWFLSSQPDVLASSMVPFSTGVDEQSVTLLRNKENELATISLTFQAKMPKQGI VAFEDAYITITDYPRADEAIVHYNDGTVETIVSGYSAEAMNYEIYNMVEAIKGTQPNRSL FFTTEVIDILDQMQKLWQN >gi|307679251|gb|GL456996.1| GENE 20 26998 - 27516 660 172 aa, chain + ## HITS:1 COG:no KEGG:EF2369 NR:ns ## KEGG: EF2369 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 172 1 172 172 313 100.0 1e-84 MHQVYVDIIVDAIIEQYQTEENFYSAYQIQAADWQAWKEGQFGLDNEVMQKIKNLFTDYE WMLTQKILRQTILFPEKRNLAVSEYKRLKTTIAKKWLQSDLGVVELIPNNKQEQEIAAGY IDLKVTLAYGEWGFDDIITFRLPATIQRQLEGSKVELLDWVNENLMDTYVGE >gi|307679251|gb|GL456996.1| GENE 21 27537 - 27755 255 72 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKYTIAGILSVIIMFGAVIFVFFGKKPVEESVHTSTETTVKSSTKISESSTVSSTATTES STEITSVSSDES >gi|307679251|gb|GL456996.1| GENE 22 27855 - 28496 774 213 aa, chain + ## HITS:1 COG:L2183 KEGG:ns NR:ns ## COG: L2183 COG1705 # Protein_GI_number: 15673347 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Lactococcus lactis # 12 213 7 205 209 172 45.0 4e-43 MKWGINEVSNYQKKRKKQLNLPKLFLGVVVVGLAFVFSLSVLSDSDKGQSESVNRQNENI SKEEFVAEITPYARELQESYGVLPSIIMGQAVLESNFGQSQLASKYNNLFGIKAYGNQPK VNLETKEYVNEVWITIQGDFRVYDNWEESMRDHTKLFVDGVDWDPNLYEKVLLAKNYKEA AQALQDAGYATDPTYADKIIHVIEEYNLNKYDR >gi|307679251|gb|GL456996.1| GENE 23 28516 - 29202 1016 228 aa, chain + ## HITS:1 COG:no KEGG:EF2366 NR:ns ## KEGG: EF2366 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 228 1 228 228 405 100.0 1e-111 MSEKWIPEIMTPLKQDIVKMPEIIRQASGIKIFGRKIKSIIFTTDIAIIRNTDAQAVIAV YPFTPHPAITKGIIEAADIPVFSGVGGGLTQGMRSAYMSLFAEAQGSMGVVLNGPTPIET IKMVDEAIDIPIISTVTSIHTPIDEKLAAGVDMINISAGKDTAATVRYFRGKYPELPIIA TGGPTESSIHETIIAGANAITYTPPSNGELFSKKMKKYREQEKATDEE >gi|307679251|gb|GL456996.1| GENE 24 29601 - 30182 815 193 aa, chain + ## HITS:1 COG:SPy1136 KEGG:ns NR:ns ## COG: SPy1136 COG0503 # Protein_GI_number: 15675113 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Streptococcus pyogenes M1 GAS # 1 193 1 193 193 242 68.0 3e-64 MKELVERIKNDGRVLGEGVLKVDSFITHQVDPELMEAMGNRFAEVFAEAGITKVITIEAS GIAPALYAAQKLGVPMIFARKAKSLTMDEELLTASVYSFTKQVTSQISISRKFLSDADKV LIIDDFLANGQAAKGLVELCQQAGAKVEGIGIVIEKSFQDGRQLLEDMGLNVVSLARIAS LSEGTVTFLEEDA >gi|307679251|gb|GL456996.1| GENE 25 30185 - 31504 432 439 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 18 438 15 428 447 171 27 2e-41 METKQLNTPQQTETPNGKAAVLGLQHLLAMYAGAVAVPLLIGTGLNFDSQQMTYLISIDI FMCGVATLLQLTVNKFFGIGLPVVLGCAIQAVAPLIMIGTNKGVGAIYGSIIASGIFVVL IAGFFSKIKRLFPPLVTGTVITVIGLTLIPVAVEKMGGGLATDKSFGDPKNLLLAFVTIA LIIVVQVWGRGFIKSIAVLIGLVGGTILAAFLGLVDLSPVGQATWFHFPQPFYFGKPTFD LSSIVLMIIISIVSMVESTGVYFALGDITGKKIGEDDLRRGYHAEGLAVILGGIFNTFPY TGFSQNVGLVQLSGIKTRRPIYFSAFFLIILGLLPKIGAMAQIIPEPVLGGGMLVMFGMV AVQGMRMLSKVDYSNDKNLLIIAISIGFGLGFNIMPTLFNKVPETVSMFTGNGIVMSSIT AIILNLLFNGLKETSESNE >gi|307679251|gb|GL456996.1| GENE 26 31832 - 32947 1215 371 aa, chain + ## HITS:1 COG:lin1886 KEGG:ns NR:ns ## COG: lin1886 COG0026 # Protein_GI_number: 16800952 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) # Organism: Listeria innocua # 20 370 19 373 374 357 48.0 2e-98 MNLDKPLLPGQVIGIIGGGHLAKMMALSAREMGFRVGVLDPQIDCPAAQVADWQLLGAYN DPEALEKLAKRAQVITYEFEHADVDALTAIQHLANIPQGTDILAITQDRLMEKSFLEDNN IVIAPYATIVSPTDIQEAIDGIGYPCILKNTRGEGRYVLHSTSDLAPSMNLLREGTCVLE AWIPYEKELSVLISGNGRGEFATFPVVETIKKERKLHETIAPARIDEEVSGELQRIAKVI AKAVGLVGTLSIEMFYTETGGIYVNKILPRPEDAGNFSIDACSFSQYDTHIRGLCNWPMP TIQLLSEAVTVNVLGNEAYETMDIINEHPDWHFHYYGHSEAKAQRAMGHITILTKEIDET LEEIKETKIWS >gi|307679251|gb|GL456996.1| GENE 27 32990 - 34285 1718 431 aa, chain + ## HITS:1 COG:SPy0036 KEGG:ns NR:ns ## COG: SPy0036 COG0015 # Protein_GI_number: 15674278 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Streptococcus pyogenes M1 GAS # 1 430 1 430 430 715 81.0 0 MIDRYTRPEMGAIWTDENRYKAWLEVEILADEAWAELGEIPKEDVQKIRENASFDVARIL EIEAETRHDVVAFTRAVSETLGEERKWVHYGLTSTDVVDTAYGYLLKQANDILRKDLQTF TEIVGAKAKEYKHTVMMGRTHGVHAEPTTFGLKLALWYSEMKRNIERFEHAAKGVEAGKI SGAVGTFANISPFVEEYVCEHLGIRAQEISTQVLPRDLHAEYVSAMALIATSIEKFATEI RGLQKSETREVEEFFAKGQKGSSAMPHKRNPIGSENMTGLARVIRGHVITAFENVSLWHE RDISHSSAERIIIPDTTILLNYMLNRFGNIVKNLTVFPENMKRNMDATYGLIYSQRVLLK LIDHGMTREEAYDLVQPKTAYAWDHQTAFRPLLDADEKITSVLSKEELDDAFDYHYHLKN VDTIFERVGLG >gi|307679251|gb|GL456996.1| GENE 28 34469 - 34840 393 123 aa, chain + ## HITS:1 COG:SA0890 KEGG:ns NR:ns ## COG: SA0890 COG2259 # Protein_GI_number: 15926624 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 7 117 4 115 118 73 41.0 1e-13 MDKQQRGIQVIRIWLGVTMLIHGVMKVTSLEDTLAFFASIGLPSLFVYGVAAIELIGGLF MIIGFLIPLVSVGFIAVLVGAIFSFGLASGFSGYEYELFLAITSLAILVSYADKKYLTLK LYF >gi|307679251|gb|GL456996.1| GENE 29 35110 - 37716 1614 868 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 1 859 1 808 815 626 43 1e-178 MNIEKMTTTLQEAIAEAQKVAVTRQHQEIDIAHLWKIFLQPNHFGRNFYTDAGLDVDAFE REVDNALDEYPSVAGGNVQYGQNLSQNLFHLLQEADSLREEFQDEFLSTEIVLLALMKLK NYRLTKYLMQQGITEKELRKNIEEMRGGDRVTSQNQEEQYKALEKYGVDLVQQVKAGKQD PIIGRDEEIRDVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVRKDVPENLKDKTIF SLDMGALIAGAKFRGEFEERLKAVLKEVKKSDGKIILFIDEIHNIVGAGKTEGSMDAGNL LKPMLARGELHLIGATTLDEYRQYMEKDKALERRFQKVLVKEPTVEDTISILRGLKERFE IHHGVNIHDNALVAAATLSDRYITDRFLPDKAIDLVDEASATIRVEMNSMPTELDQVTRR LMQLEIEEAALKKESDDASKKRLANLQEELADLREEANSMKMQWETEKEEVNAVSNKRAE IDKAKHELEDAENNYDLERAAVLRHGTIPQLEHELKELEEKNAKDNVKMVQESVTENEIA QVVGRLTGIPVTKLVEGEREKLMKLNETLHKRVIGQDEAVDAVSDAVIRSRAGLQDPNRP LGSFLFLGPTGVGKTELAKALAEDLFDSEDHMVRIDMSEYMEKHAVSRLVGAPPGYVGYE EGGQLTEAVRRNPYTIVLLDEIEKAHPDVFNILLQVLDDGRLTDSKGRVVDFKNTVLIMT SNIGSQLLLEGVTPEGTIPEEVENQVMNILKGHFKPEFLNRIDDTILFTPLSLDNVKGII GKMTAQLAHRLEQQEIVLEITDEAKTWIAENGYEPAYGARPLKRFITREVETPLAKEIVS GRVMPKTKVTISLLDNQLVFENEPIEEV >gi|307679251|gb|GL456996.1| GENE 30 37751 - 38230 516 159 aa, chain - ## HITS:1 COG:MA3568 KEGG:ns NR:ns ## COG: MA3568 COG3613 # Protein_GI_number: 20092374 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside 2-deoxyribosyltransferase # Organism: Methanosarcina acetivorans str.C2A # 4 106 7 108 140 80 47.0 1e-15 MTKIYFAGPLFSQADLRYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALAD TENVLASDLLVALLDGPTIDAGVASEIGVAYAKGIPVVALYTDSRQQGADNHQKLDALNE VAENQFHYLNLYTVGLIKLNGRVVSSEEDLLEEIKQRLS >gi|307679251|gb|GL456996.1| GENE 31 38254 - 39474 1195 406 aa, chain - ## HITS:1 COG:BH1812 KEGG:ns NR:ns ## COG: BH1812 COG4552 # Protein_GI_number: 15614375 # Func_class: R General function prediction only # Function: Predicted acetyltransferase involved in intracellular survival and related acetyltransferases # Organism: Bacillus halodurans # 15 406 7 386 386 184 32.0 3e-46 MDEQEFRKQLTLKPVEEEHIDQFNELLSYVFQVTEADIEESGFENKRAFIKSKQPILELS KVFGWFHENQLISQIAIYPCEVNIHGALYKMGGVTGVGTYPEYANHGLMKDLIQTALEEM RQDKQWISYLFPYNIPYYRRKGWEIMSDKLSFKIRDTQLPKTVPVPGMIERLAVDHPDVF DVYARFARQNHGALIRSAFNWEEYWRFENEEERTAAVYYGANQEPLGVLFYWVADEVFHI KEMFYLNQEARNGLWNFITAHFSMVYWVKGDIYKNEPLAFLLEDSQIKESIEPYYMARIV DVKAFLENFPFESTAKPFHFVVKDPVAEWNNGIFGLIWDENDQVTITDEPLGTAVHLDIQ TLTCLVMNYRRPSYLHRIERIDTDKETLNSLERIFPDQEAYFSDYF >gi|307679251|gb|GL456996.1| GENE 32 39721 - 41556 2009 611 aa, chain + ## HITS:1 COG:SPy1053 KEGG:ns NR:ns ## COG: SPy1053 COG0481 # Protein_GI_number: 15675045 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane GTPase LepA # Organism: Streptococcus pyogenes M1 GAS # 1 610 1 610 610 1018 82.0 0 MNNKEMKARQEKIRNFSIIAHIDHGKSTLADRILEKTNTVSSREMQDQLLDSMDLERERG ITIKLNAIELNYTAKDGETYTFHLIDTPGHVDFTYEVSRSLAACEGAVLVVDAAQGIEAQ TLANVYLALDNDLEILPVINKIDLPAADPERVRTEIEDVIGIDASEAVLASAKAGIGIED ILEQVVEYVPAPSGDIEAPLKALIFDSIYDSYRGVVLNIRVIDGVVRPGDKIQMMSNGKT FDVTEVGVFSPKPIARDYLMVGDVGYITASIKTVQDTRVGDTVTLADNPAAEALPGYRKM NPMVYCGLYPIDTSRYNDLREALEKLQLNDAALQFEPETSQALGFGFRCGFLGLLHMDVV QERLEREFNLELITTAPSVIYHVNKTDGTTVVVDNPAEFPEPVTIESVEEPYVKAQIMVP NDYVGAVMELSQRKRGEFITMDYLDDYRVNVVYEIPLSEIVFDFFDKLKSSTKGYASLDY EMAGYRTSRLVKMDILLNAEKVDALSFIVHRDFAFERGKAIVEKLKKLIPRQQFEVPVQA AIGQKIVARSDIKALRKNVLAKCYGGDVSRKRKLLEKQKEGKKRMKQIGSVEVPQEAFMA VLKMDEDDQKK >gi|307679251|gb|GL456996.1| GENE 33 41631 - 42635 1398 334 aa, chain + ## HITS:1 COG:SPy2207 KEGG:ns NR:ns ## COG: SPy2207 COG0180 # Protein_GI_number: 15675940 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 4 334 6 340 340 443 67.0 1e-124 MNTILTGDRPTGKLHLGHYVGSLKKRVEMQADPTNQLFVMIADLQALTDNAKNPEKVSAN VLEVALDYLAVGLDPTKTTIFIQSQIPQLAELTMYYLNLVTTSRVRRNPTVKAEIEQKKF GEGVPTGFFIYPVSQAADITAFQANLVPVGEDQKPMLEQAQEIVHSFNQTYGEVLVRPEA VLPPKGMGRLPGIDGNGKMSKSLGNGIYLSDPAEVVQKKVMSMYTDPNHIRIEDPGQVEG NMVFTYLDVFGKEKEYIEELKEHYRHGGLGDVKIKRYLIDVLEEELAPIRRRREELAKNP EAIMEMLHKGSLAAEKVAAQTLTEVKKAMGIQYF >gi|307679251|gb|GL456996.1| GENE 34 42689 - 44422 207 577 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 338 563 2 230 245 84 28 3e-15 MIKPEHPIFYGLMICSLIGNLLIVAMTYIMAIGIDNLLEAIKRVGLKGMTLPLVEEALLG PVLLLILFSIISSITSFIQERAMASLSERVTLRIRKEVTKKFKTLPMAFFDNHQVGDIIS RSTTGLNQLSQVLLTGINQFFTSVVTILFAGIMLFYIDAKLTILVLLLIGGSTFMTTKIA NKNKVFADQSQAELGQLNNKMEEYLAGNLVTKTFNQQQNAEKTIAAVNQQHYRAFKKAQF LNFAIYPAIRFINQLAFIISAILGAMLVLSGGITIGFLQAYLQYINQISEPISTASYVIN SIQAAMASIDRIFVILDEADEQPEATHLETISSPKGAIEFKNVQFGYTPEKILMKNVDFS VQPKKTVAIVGPTGAGKTTLVNLLMRFYEINQGAITFDGIDITKLSRQNLRNLFGMVLQN TWLFEGTVADNIAYGKKDASREEIIEAAKIAQCDHFIRTLPQGYDTIISSENGALSQGQQ QLLTIARIILANPPVVILDEATSSVDTRTEAHIQKAMETVTENRTSFVIAHRLSTIENAD LILVMKNGDIIEKGTHQELLQAPTLYASLYNSQFQTT >gi|307679251|gb|GL456996.1| GENE 35 44520 - 46247 194 575 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 333 558 278 509 563 79 27 9e-14 MKLMKEFIKENKWIVLATTLTICLQIAGTLGVPKLVGKLIDVGIVSGDQQVIKTIGIQMF LVAFIGTIAAIISSYLSALVAAKFGFQVRGLFFKKFQQFSMKNVDKFGSNSLLTRMTNDV DNVQTMIVLFCQLIFPAPIISLFALVMTFSYSVSLAWVTLASIVFYLVVVYFLMKKGTPL SLKIQPKMDRITTTLREFFTGINMIRAFNNQDFEEQRTNQTFKNYAERMSKVNRIFAWIT PVAFLLMGVVYASILWFGGNLVAVGTLQIGTVTAVIEYTLLTLAYLMIAAMVLVVIPRSV ASLNRLQEVLSEEIEISDPHTEAIIAYHPEKALICFDHVTFQYTETADPVLENVSFVIPK GKTTAIVGATGAGKSTLVKLLLRINEVTAGTISYSGTDIRSLSQQTIRQVISYVPQKAFL FSGTILSNLLMGNAKATTEEIRTALEISQSSEFIDSLPQGIESFVAQGGANYSGGQKQRM CIARALIKPADVYIFDDSFSALDYKTDAALRAALHAQMADKTLLIVAQRLSTIMNADNII VLDEGRIVGQGTHADLLTTNSYYQDFAKSQGILPK >gi|307679251|gb|GL456996.1| GENE 36 46362 - 47129 848 255 aa, chain + ## HITS:1 COG:no KEGG:EF2225 NR:ns ## KEGG: EF2225 # Name: not_defined # Def: MerR family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 255 1 255 255 463 99.0 1e-129 MEKNYTIKDVSELLNIPKSTIRYWDEQGLISTTRNEENGYRTFDLEDLFKIYDIDFYRKM GIPIKDMLNLYKKTPTDLYATMEATEEQLGQEIKRLQHKYKEIKKRKLHLHALIDLETLV FSDEPIPFDKIVVVDIEDPEEMKVYMEHISTLGIYGDLSESNELTYGICLANHVNKKSLD KVIWLKEPSSQYKGFILKVNTQDTRLNNIEEVKKRLAKQGFETGIVVGEHILTQLEEENQ YIEYYYGWIEILGEK >gi|307679251|gb|GL456996.1| GENE 37 47605 - 51336 3112 1243 aa, chain + ## HITS:1 COG:no KEGG:EF2224 NR:ns ## KEGG: EF2224 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 1209 1 1201 1499 1838 93.0 0 MNKAVKNFVSYLMITMLFILNLLPMMNAFAQEVTSDAENTVEKDGLKVIGKIEDTSSQED IKTVTYEITNTRDVPIKNLILKQKNNNDSPIKFVLDTLSEERGPTSLEEQAKVETNEKDQ TTDIKLLNLQPNSTRKITINGQITTKASSKLLVSVLIEDNEKGTLVIDLPSKDMLADKEF VSKEKQETSETKVENQASETASSTNEMTATTSNETKPEAGKATESIQETALTQATESPEQ PPLKAQPTGPLVPPTPGRGFNTPIYQSVHRGELFSTGNTNLKIANENTGAAQTFLNTRGA SSGYAINNFPLEFADVDNDPNTYNSSRAYIDLNGAKEIAWAGLFWSASRYKGPAYGTNLS DEEISAPVQFTTPNGTVQRVSPQRYHRIDQDATNPGQRFGYNNTGFSNYADVTSILQGDK SATGSYTLADIPMTSSLNGQYQYYNFSGWSLFVVTKDQASKSRAFSIYYGARGNAAGTNN EFTMSNFLTAKQGKLDPIVTWFTVQGDKYWTGDNAQIKNSAGTWVNISNTLNPVNNAMNA TVTDNDEHMVDKYPGKFAPDYPNFLDIDIDRMAIPEGVLNAGQNQINFRTTSSGDDYSTN AIGFAVNAETPEFEIKKEIVEPKETYKVGETITYRVSLKNTKADSEAINSVSKDALDGRL NYLPGSLKIISGPNSGEKTDASGDDQAEYDATNKQIIVRVGNGATATQGGSYKADTAETI YEFKAQINERAKANELVPNSATVEAVDILTSAKVNETSNIVEAKIADEQVTGKLTATKTV NNAKPKLGETIEYTISFRNTVENGVLNKVVITDQLPKGLTYVKDSLTSVGDEPKPTSLKE TNGIITAEYPSITDTKERSIRFKVIVNEEAKAGETILNKAKVDDTVNPPEEPEVPVVPEA KAGKLAATKTVNNAKPKLGEEIEYTISFRNTIENGVLNKVVITDQLPKGLTYVKDSLTSV GDEPKPTSLKETNGTITAEYPSITDTKERSIRFKVIVNEEAKAGETILNKAKVDDTVNPP EEPEVPITPEEPITPRIKEGKLTATKTVNNAKPKLGEAIEYTISFRNTIENGILNKVVIT DQLPKGLTYVKDSLTSVGDAPKPTSLKEANGIITAEYPSITDTKERSIRFKVIVNEEAKA GETILNKAKVDDTVNPPEEPEVPITPEEPAKNKKETKKVVTDQNKPTKNSKNEIAINKKE TSKSSYLPKTGEKVQKIFAYLGVGLILIVLILYVIKRNKEKEE >gi|307679251|gb|GL456996.1| GENE 38 51430 - 52083 535 217 aa, chain - ## HITS:1 COG:SA2106 KEGG:ns NR:ns ## COG: SA2106 COG1266 # Protein_GI_number: 15927893 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Staphylococcus aureus N315 # 70 217 84 238 245 65 33.0 1e-10 MNFIRKNTRAISLIVVYFFTVLMQAGSLLLLAISLLFDNNLVESSFANLVTGLTITAIVG IVLFWKEIVAGFDYFKEETLWRIFSIFLWVGLIFLVDIIIQKIMSNNPIANQQDVLSFGA QVPLLVTLFFLAIVGPIAEELVFRQVLMNCLSETIGIASATIISIFLFTFMHTQQPLDFL IYLPGAILLSAAYLKSNRSLVFVMAIHIVNNMLGFLL >gi|307679251|gb|GL456996.1| GENE 39 52387 - 53325 917 312 aa, chain + ## HITS:1 COG:L129753 KEGG:ns NR:ns ## COG: L129753 COG4209 # Protein_GI_number: 15673479 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type polysaccharide transport system, permease component # Organism: Lactococcus lactis # 7 312 4 310 310 414 72.0 1e-115 MKKKNGFFQNVWRYKALILMALPGFIWFIFFFYIPVLANVVAFKDFHISPDGFLASLRES PWVGFENFKFLFASKDAWLITRNTILYNVVFLAFNLFFAIAFAIIMSELRNRRLVKVYHT MSLLPYFLSWMVINYFVYAFLSPDKGILNQWITGNGGTMINWYADPRWWPVIFVFLNVWK SLGYNSIIYYASVMGIDPTYYEAAMVDGANKWQQIKNVTIPQILPMMSVLLILNIGGIFR ADFGLFYIVPRNSGALYNVTSVLDTYIYNGLTATGDVGMTAAAALYQSVVGACLLLIANL VVRRIEPDSALF >gi|307679251|gb|GL456996.1| GENE 40 53337 - 54260 988 307 aa, chain + ## HITS:1 COG:L128777 KEGG:ns NR:ns ## COG: L128777 COG0395 # Protein_GI_number: 15673478 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Lactococcus lactis # 1 307 1 306 306 411 71.0 1e-115 MKKKKVTSVNVRSFNPTANLIFNIVIAIFAISCVVPFFFVIMISLTSEGSLAANGYRFWP KEFSLEAYRYIFQGAMSQRIIHALGVTVFITVTGTIVNATMTSLYAYVISRSNFPFKKFF TLFALITMLFSPGMVANYLVMTNLLQLKDTIWALILPLALGPFNILVMRTFFKKTVPDSI IESARIDGASEMRIFVSIVLPLAVPGIATISLFAALGYWNDWFNALLYIQKDTLVPLQYL LMKIQNNLEFLSRSTDMGAAAQEGLGVLPSESARMAIVVLSTLPIALTYPFFQKYFVGGL TIGGVKE >gi|307679251|gb|GL456996.1| GENE 41 54284 - 55750 1246 488 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900035|ref|NP_344639.1| ABC transporter, substrate-binding protein [Streptococcus pneumoniae TIGR4] # 1 488 1 491 491 484 48 1e-135 MKKWQKGLAVAGAAALAVGLSACGKSSKDAASKGDDSTPTLLMYRVGDKPDNYDQLIDNA NKIIEKKIGAKLKMEFVGWGDWDQKMSTIVASGESYDISLAQNYATNAQKGAYADLTDLA PKYAKEAYDQLPDNYIKGNTINGKLYAFPILGNSYGQQVLTFNKEYVDKYNLDISKVDGS YESATEVLKEFHKKEPNIAAFAIGQTFFATGNYDFPIGNQYPFAVKTTDTGSPKIINQYA DKDMINNLKVLHQWYKDGLIPTDAATSTTPYDLNTNTWFMRQETQGPMDYGDTILTQAAG KPLVSRPLTEPLKTTAQAQMANYVVANTSKNKEKAVELLGLLNSNPELLNGLVYGEEGKQ YEKVGDDRVKLLKDYTPTTHLSAWNTGNNLIIWPEESVTEDMVKERDKSIEEAKDSPILG FTFVNDKVKTEITNVATVMNRYAASLNTGTVDPEETLPKLMDDLKTAGWDKVQKEMQTQL DEYIQSQK >gi|307679251|gb|GL456996.1| GENE 42 55821 - 56456 561 211 aa, chain + ## HITS:1 COG:SPy1589 KEGG:ns NR:ns ## COG: SPy1589 COG5578 # Protein_GI_number: 15675476 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Streptococcus pyogenes M1 GAS # 5 202 3 200 201 118 37.0 9e-27 MESTGIQRLFYLSWTVIKLNLLFVLFSLAGGIIFGVGPALQMMTDFILEEGMNYQAITVK RAFESWKAHFKRSNCYFLLFLFTLGFVFYNIYLAVQFTGIMWLIITFILFFVSLILVIFY IYMLLYEGSYFISTIDLMKLSFISIFLNLGVFFKVLFGVISIIALTWKMKGLLLFASFAL IMMWCAYVTRKNRQFIDGKLEQNEANLQKTV >gi|307679251|gb|GL456996.1| GENE 43 56428 - 58140 1850 570 aa, chain + ## HITS:1 COG:SPy1588 KEGG:ns NR:ns ## COG: SPy1588 COG2972 # Protein_GI_number: 15675475 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Streptococcus pyogenes M1 GAS # 1 566 6 568 574 362 36.0 1e-99 MKRIFKKLFKKKYLLNRLVQKYSLLLTSIILLTVAALCAYVTYTINLSIDSQKNNAISQI DSYVTNKNNAATNMINELAGSASKIENMRKYMELSPPEYFDYTYSQWSEDRVSTHFGNNL STLFSTFPDLEEVIIRLDEFDQVLFANRTATNGKKMDMSSIKKHGFQLMRIISDPYTGQP LGELYTVFSSQELLGNQADLLKKSGINAFIYDSAGNQIFSEKAQFTKEEERQLDKRMHTD SDIQQVFHNRYDITEIESSGRSTILLLTSRRVLFQQLFMNYAAILGIGLLLIVILLVGLN RLFKRYSQQVQLILEATRAIGDGNLKERIDTNQVQEELNDIASAINFMVDSLDQYIHDIY TLEIKQRDAHMRALQSQINPHFLYNTLEYIRMYALSRQQEELADVVYAFSTLLRNNINQE KTTTLAEEISFCEKYVYLYQMRYPDQFAYKFEIEEAIADVEIPKFIIQPLVENYFVHGID YQRQDNAIKVHAYREGEKIIVAVVDNGKGITANRLEEIRARLNQTEIDTEQSIGLRNVHE RLQRFFGESYGLTIEGKEGEGTTIRLSFVA >gi|307679251|gb|GL456996.1| GENE 44 58152 - 59630 1533 492 aa, chain + ## HITS:1 COG:SPy1587 KEGG:ns NR:ns ## COG: SPy1587 COG4753 # Protein_GI_number: 15675474 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Streptococcus pyogenes M1 GAS # 1 492 1 491 494 362 43.0 1e-99 MYRVMFVDDEYMILEGLKWIIPWQELGFEIVKTARSAQEALAFLETESIDVLLTDITMPE MSGIELIEQAKKKGHQFISLILSGYQEFDYVKKGMALQVQDYLLKPVNKQELLANIQRIK TELDQQKKSHARVRLYLENGLMRWLNDEISEGEYEELMQQFATIKPGDFTVLLVEAEMSF LETIKELFMKKGQLLFIESWMSTYHQLLLIYKGARQEAFLFIREIEAILAGQGQIFVGES VNEWETVYESYEKVKQLQAIETFYQEFLPNNQKEQMNRSAEDFTFLAFNQALMIGDMQTI QRELDAIFNQLSQQHATPEYVRYVVFLLFSDISRQYPTVLEENYEKIVEEIRASNNLNTL YALMQQVLAEVKNKPKIKKYSESVSQAVERIEQGYLEELNLKTVADELHLNPSYLGQIFK KETKRSFSQYLNQVRTKHAQKLLLYTDDTINEISEKVGFNNTNYFSKMFKKLNGITPKEF REQYQSNYAGVE >gi|307679251|gb|GL456996.1| GENE 45 59674 - 61815 2076 713 aa, chain - ## HITS:1 COG:L135972 KEGG:ns NR:ns ## COG: L135972 COG3537 # Protein_GI_number: 15673483 # Func_class: G Carbohydrate transport and metabolism # Function: Putative alpha-1,2-mannosidase # Organism: Lactococcus lactis # 1 710 1 715 717 947 64.0 0 MNIQAIDTRHGTANQHSFSNGNCLPYTGVPFGMNFYAPQTTDQKGSWWFHPEDRTFQGYR VTHQPSPWMGDFSHLLMTPVSGSLSELSLFHAQSSYRPEESLFSPVEINLTQLRYQITSQ LIPSMYGGILTIDYHQKDNHLLLTLPGRYQVKQLDDHQVAVKVINYSGCEDPDFSFYFVL HFEQPLTKWFAPSSGEDGKILLSFGNIAQQVVHFSSSFISEKQAQLNLAREISLRSTEML QQGIADWHNYFDRLKVTHENPEHTKTFYHTLYRTFLFPQTFYELDENQQPIHYDTFSQTV RPGVLYTNNGFWDTYKTVYPLFSLIAQEKYEEMLEGFLNSYNETGFLPKWLSPDERGLMP GTLIDAVIADAAVKKIRPDLMPQFLEAMKKGATQQSERENYGRQGTLDYLKYGYVPSTYH ESVNHTLDYAYSDFCISQVAKTLNDSETATFYRQQALNYQQLFNPETGFMQAKDTEGNFR PDFLDIRWGKDYAEGSAWQSSFAVYQDFAGLIKLYGSELAFEKKLIQLCNQAPNFNVEGY GFEIHEMSEMAAIDFGQLAISNQPSFHYPFLFSYIGKPEMAQPLLKQLMQTFDASPTGYP GDEDNGSMSAWYIFNSLGFYPVTPGTGEYVIGMPLVQTAEVKLSNGKQLTIQTSPNKVQQ QFIHEIQLNQEKHTAPYFTHQELLNGGTLDYQLGIVPNPQNTAERPFSLSTEK >gi|307679251|gb|GL456996.1| GENE 46 61988 - 63088 618 366 aa, chain + ## HITS:1 COG:no KEGG:EF2216 NR:ns ## KEGG: EF2216 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 366 1 370 370 558 97.0 1e-157 MIVIYFFSTKSQQFFAYVWAIFPVIAFFLVSFYTLDFLFSPSYLIMVPVFTIMFKINYKK DYSLVALLKMSIRQFVISFLAFIASSSFSWSIILNSSVTFLIVYLFYSSATPMRYHSYLM MFTFCQLIQVKGNTFLMQSQVVAFLIGLFLLALTLNAWWQTGLSQLTSLKSRGHKSIQLN MKQQKLAVINFWHDLQQTFFGITSFKQFLESPDERVQRFRLAVRMSFTITLSFILMWSVG GIKIIWIPMNVFLLLHPVKAEMNTRIKTRFWGTLLGCFLSLFVVNWLQLPLTHLVVSSII GIFVYALKPGTVLQVTMATIFGLCLATISLRGMYAAELRVSFVLLAIFVVCLIDLGLFVY QRILRF >gi|307679251|gb|GL456996.1| GENE 47 63132 - 63614 718 160 aa, chain - ## HITS:1 COG:lin0420 KEGG:ns NR:ns ## COG: lin0420 COG3832 # Protein_GI_number: 16799497 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 12 155 15 156 160 73 34.0 1e-13 MKDTFRLENQTIYFGTERAISASPQTIWRYLTETDKLKQWFPELEIGELGVNGFWRFILP DFEETMPFTDYAEEKYLGVTWDTGIIYFDLKEQAPHQTLLVFSESLPENFTTPRHKDIAG WSIVLNRLKQVVETPDAAPEKIDFPQIENHYLEKLTNLEN >gi|307679251|gb|GL456996.1| GENE 48 63636 - 64016 527 126 aa, chain - ## HITS:1 COG:CAC0249 KEGG:ns NR:ns ## COG: CAC0249 COG0346 # Protein_GI_number: 15893541 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Clostridium acetobutylicum # 1 126 1 126 126 158 61.0 3e-39 MFFKEIHHVAINASNYQATKNFYVEKLGFEVLRENHRPEKNDIKLDLKLGSQELEIFISD QFPARPSYPEALGLRHLAFKVEHIEEVIAFLNEQGIETEPLRVDDFTGEKMTFFFDPDGL PLELHE >gi|307679251|gb|GL456996.1| GENE 49 64228 - 65694 1803 488 aa, chain + ## HITS:1 COG:lin1223_2 KEGG:ns NR:ns ## COG: lin1223_2 COG1263 # Protein_GI_number: 16800292 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Listeria innocua # 92 474 1 383 403 537 74.0 1e-152 MGKFQSDAQQLLKAVGGKENISAVSHCATRMRFVLKDPKKADVPVIEDIPSVKGTFTNAG QFQVIIGNEVPQFYNDFSAISGLEGVSKEEGKAAAKSNLSPVQRVVSVLAEIFTPLIPAL VIGGLILGFRNILEGVPFGFLDGQTIVEVSQFWNGVNSFLWLIGEAIFHFLPVGITWSIT KKMGTTQILGIVLGITLVSPQLLNAYSVATTKAAEIPFWDFGFAQVNMIGYQAQVIPAML AGFLLAYLEIFFRKVIPQAISMIFVPLFALVPTVLAAHVILGPIGWTIGSWVSDIVNAGL TSTFNWLFGAVFGFMYAPLVITGLHHMSNAIDLQLIADFQSTNLWPMIALSNIAQGSAVL AVIFMHRGNKKEEQVSIPAMISCYLGVTEPAMFGINLKYVYPFVAGMIGSAMAGMFATLM GVRATSIGVGGLPGILSIVPQYYLPFLVAMVIAIIVPMGLTYIFRKKGIFNKVDPVDEAT GMLYSEEG >gi|307679251|gb|GL456996.1| GENE 50 65822 - 66826 1300 334 aa, chain + ## HITS:1 COG:no KEGG:EF2212 NR:ns ## KEGG: EF2212 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 334 1 334 334 580 99.0 1e-164 MDIYLKKAILHIIDRETGTPVFSEKELDLTTEYIRTYLTAKISKLSTAQTKTGTLAENSS FVDTLRGIPSDFVKKSQEVTQHWYDVYSGSEDAPSADILFILYELDTVLHVAMIKLNYKE SYTHYVDYEEESVYNKLIINRAILSSKSQKPDEGITVDLDTLAFELLEKRYEFSGEKIWY FSEKVIETQAAPSMEENIKEIKKAVKRIGKKFNEDEFELMASVKEAVYDSIEETGTIDNE QIAEQVFKENVSAKLAYQEEVNESKFVDKTPPVRESREISEKKFGKQKLKMDNGIELIVP LDVYRNGDLIEFVNNPDGTVSIMLKNIEKISNQL >gi|307679251|gb|GL456996.1| GENE 51 66864 - 67217 447 117 aa, chain - ## HITS:1 COG:L177221 KEGG:ns NR:ns ## COG: L177221 COG5294 # Protein_GI_number: 15672565 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 2 117 3 116 120 84 39.0 7e-17 MKTLLKILIPIVILAGGSWGVYNYYYGGEAYYTQITTSGEKKDEKTNSGEAMTIYYYQQP AFNKNGEEKTVELNESRDQPLRMKAYLKLKVNPRKGVISWNEVTEKEVPEKALEKLK >gi|307679251|gb|GL456996.1| GENE 52 67416 - 68120 842 234 aa, chain + ## HITS:1 COG:TM1511 KEGG:ns NR:ns ## COG: TM1511 COG2738 # Protein_GI_number: 15644259 # Func_class: R General function prediction only # Function: Predicted Zn-dependent protease # Organism: Thermotoga maritima # 5 228 2 224 230 175 44.0 7e-44 MMPFYFGIDPTYILVIIGIAISGAASAYVNSTFRKYDQVRSSKHVTGTQAAQYILQKEQI NDVGVQQIAGDLTDNYNSGNKMLSLSEATAQSTSVAAIGVAAHECGHAVQDHTNYVPLRL RAAIVPVANIGSTISFPLILIGVLFSWNQTLINIGILAFSLALIFQLVTLPVEFNASRRA LSILSEGGLLTEEEVPMARKVLFAAALTYVAAALSTFLQLLRLVILFGGNNRRD >gi|307679251|gb|GL456996.1| GENE 53 68204 - 68542 577 112 aa, chain + ## HITS:1 COG:no KEGG:EF2209 NR:ns ## KEGG: EF2209 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 112 1 112 112 132 100.0 5e-30 MKASTKIGIGLSIAAVASVSVAVIASEKIIKKVSHVSNRYKVKKFVDDKFDGNQKLLSIV DDLSDDELDSVLNVVDRVKDGGSKLAEYGEKVKDNTDSLKERFFTFIEDAMK >gi|307679251|gb|GL456996.1| GENE 54 68570 - 69415 734 281 aa, chain - ## HITS:1 COG:lin0782 KEGG:ns NR:ns ## COG: lin0782 COG0384 # Protein_GI_number: 16799856 # Func_class: R General function prediction only # Function: Predicted epimerase, PhzC/PhzF homolog # Organism: Listeria innocua # 1 279 1 279 282 358 63.0 6e-99 MKITAYVASAFSKNHEGGNKAGVVFMTQPLTRTQKMAIAKELGFAETAFISDSKIADFRL EYFTPKEEVDLCGHATIGAFTIMKHLNKLLQTEYTIETNSGLLAITANGEQLFMEQTVPT FYDTLTLEELSGCFDLNAVATAFPIQIVSTGLKDILVPIKNAQLLQDLQPNFEKIKLLSQ KYRVIGMHLFALSEENIICRNFAPLYDIDEEAATGTSNGALACYLHHHQILQKTNYTFVQ GYTLNAPSEVLVCLNTTPQKTIDQVLVGGRGYYVETKELFL >gi|307679251|gb|GL456996.1| GENE 55 69472 - 70323 639 283 aa, chain - ## HITS:1 COG:lin2875 KEGG:ns NR:ns ## COG: lin2875 COG2508 # Protein_GI_number: 16801935 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Listeria innocua # 1 279 1 282 293 130 35.0 3e-30 MIIENLSQLYPKGYLSKTIGSEATYSIPVDDQFFIVNKAFLSIKEQHLLEALFPISENPT ITGNHPWFSYLFQQAKLPAEGTFRMLQIQTNVTKELQAEWQFNLTKMFPDTVDCFSPSNN MYILVEEQSKNTFQQEEIQGIFLTLDTDFDCTSAVFVGNFYSSEDILRRCFHEEQRIFSE ELNSSSRTTVFSLTDVALHYFTKEAMSQNVLVEYYRRLLNKDTDIQPIISALWKNQGNIS STAKDLFMHRNTLHYRLEKFFEQTGLSLKKMDDLIFCYLLLRK >gi|307679251|gb|GL456996.1| GENE 56 70401 - 70922 626 173 aa, chain + ## HITS:1 COG:lin2867 KEGG:ns NR:ns ## COG: lin2867 COG0590 # Protein_GI_number: 16801927 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Listeria innocua # 12 164 2 154 154 192 62.0 2e-49 MGKKETTLTQEEKEFFMREAIAEAKKAEGLAEVPIGAVIVRQGEIIGRGHNLREARQEAT AHAEMYAIQEACRGIENWRLEETQLFVTLEPCPMCSGAMLLARIPEVYYGATDPKAGTAG TLMNLLEDERFNHVAYVEAGVLEEECRLLLVQFFKKLRAKRKEEKLLKNQKKD >gi|307679251|gb|GL456996.1| GENE 57 71116 - 71958 567 280 aa, chain - ## HITS:1 COG:SPy1488 KEGG:ns NR:ns ## COG: SPy1488 COG0582 # Protein_GI_number: 15675393 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Streptococcus pyogenes M1 GAS # 3 278 101 380 380 210 43.0 2e-54 MNVDVLIRNTDTKFFQDFINDLPHSWEYKKKFKSVLNMSFTYAQDMGMIDENPINRVKVV KPPLTKENFENIESKYLEEREVYQLLSYYYSTFQSVHHGRLAEFMYLTGLRAGEAISLTI NDYVKNEHAILVNGTLDYSNGYKNATKELPKTLASFRKVELSNRAVEIIEELILEREIKF KEQTNYLFVGKTGNPIQVNSFNASLKKANESLGKNKINKTISSHIFRHSHISLLAELNVP VKAIMERVGHVDTETTLKIYTHVTKKAKTNLVEALNKYGK >gi|307679251|gb|GL456996.1| GENE 58 72057 - 72251 263 64 aa, chain - ## HITS:1 COG:L102735 KEGG:ns NR:ns ## COG: L102735 COG0582 # Protein_GI_number: 15672485 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Lactococcus lactis # 1 55 1 55 382 64 61.0 4e-11 MWIEELPNGKYKYFERYKDPYTEKYRRVSVTLNSKSNQAKKQAMMELQDKINNRMEKKDQ KKYH >gi|307679251|gb|GL456996.1| GENE 59 72318 - 72890 565 190 aa, chain - ## HITS:1 COG:no KEGG:Cbei_4244 NR:ns ## KEGG: Cbei_4244 # Name: not_defined # Def: cell wall binding repeat-containing protein # Organism: C.beijerinckii # Pathway: not_defined # 61 190 83 214 214 104 44.0 2e-21 MKKITISILLLSSLTLGACDSSSTAPEKNKKETSTTKITEKTSATKTSTSTESTSDNKKT VYNLGEWWEVPNQWKLKIDSVTSTDERNPYSDKSPQQVVIISYTYENLGYEDDIQDLFIM PENVVDSAGIMGETYPVSTTGAKPTPVGATMSGAQAAYGVQNPGGNIKILFKKYDSNRTG QAATFEIPVQ >gi|307679251|gb|GL456996.1| GENE 60 72951 - 73151 191 66 aa, chain - ## HITS:1 COG:no KEGG:SP70585_0029 NR:ns ## KEGG: SP70585_0029 # Name: not_defined # Def: phage protein # Organism: S.pneumoniae_70585 # Pathway: not_defined # 1 65 1 65 304 90 70.0 3e-17 MKVGMRKPSIKKSISARTTGKAKRKFKKAVIPGYGQKGTGFIKNPKKAMYNKVYNKTTFS FWDLFK >gi|307679251|gb|GL456996.1| GENE 61 73193 - 73747 589 184 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282598715|ref|YP_003358824.1| ## NR: gi|282598715|ref|YP_003358824.1| hypothetical protein PHIEF11_0034 [Enterococcus phage phiEf11] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_01190 [Enterococcus faecalis TX0411] putative phage protein [Enterococcus phage phiEf11] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_01190 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9495_00071 [Enterococcus faecalis TX2141] # 1 184 1 184 184 302 100.0 9e-81 MKKIFASMAFLLFVVVIFVGCSKNVNPDSSKSSTQESSKTYKILVDQDSTEQKEKLEKIS EYYKTADPKSYNSNVRVNSMLRDEKAHKGEKVYSLAKIIQIVDEPSDEYIYYMGYVTYAK NDREYVMLAVLKDNVYSKVLQDDEILFWASFAGSYDYTTNLGDNNTLPLLKVDMYKNVTA SEEK >gi|307679251|gb|GL456996.1| GENE 62 73835 - 74308 387 157 aa, chain - ## HITS:1 COG:no KEGG:EF1276 NR:ns ## KEGG: EF1276 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 156 1 156 157 221 71.0 1e-56 MNEYELLVSEVQKKAPVIETDLFQNTGCYGLYRDGRIYIEKSLSLIKKRNVLAEELGHHD TSFGDILNQDCLENRKQELKARQYALEQLVTLDDLIKCSESGFSNHYTCAEFLGVDVETL KNVLAYYRQKFGDTHFYKGRIFEFNDLSVMILNTNLQ >gi|307679251|gb|GL456996.1| GENE 63 74325 - 74897 411 190 aa, chain - ## HITS:1 COG:L38687 KEGG:ns NR:ns ## COG: L38687 COG1396 # Protein_GI_number: 15672993 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 3 125 2 123 180 100 52.0 1e-21 MDRVKTSARLKQLMSERNLKQVDILRLSEPYQKELNIKMSKSTLSQYVTGKQSPDQNRIY LLSKTLDVNEAWLMGFDVSKKRIPDEQRSSEKDDFDIVPIFNQLEPKLQQLIYNEAKSHL EKQNKASNNVVNINKKKYDTLAAHSPDPDKVFTDEEKLKINQFLDKVDADYDRKQKECKH LFDDDSDDKE >gi|307679251|gb|GL456996.1| GENE 64 75056 - 75289 222 77 aa, chain + ## HITS:1 COG:no KEGG:SAOUHSC_02234 NR:ns ## KEGG: SAOUHSC_02234 # Name: not_defined # Def: repressor-like protein # Organism: S.aureus_NCTC8325 # Pathway: not_defined # 1 73 1 73 74 115 75.0 7e-25 MCYDYSKLAGRIVEKFGTQYNFAIAMGLSERTISLKMNGKVSWKDTEITKACKLLDLETN FIHLYFFKEKVHVCEQR >gi|307679251|gb|GL456996.1| GENE 65 75371 - 76090 546 239 aa, chain + ## HITS:1 COG:SPy0946_2 KEGG:ns NR:ns ## COG: SPy0946_2 COG3645 # Protein_GI_number: 15674964 # Func_class: S Function unknown # Function: Uncharacterized phage-encoded protein # Organism: Streptococcus pyogenes M1 GAS # 118 237 4 123 127 145 56.0 4e-35 MNELIKVTTNENDEQLVNGRELYEFLGVKDNYTDWFKRMIKYGFDENVDFISFSEKSDKP FGGRPQVNHYVKLDMAKEISMLQRTERGKQARRYFIQLEKFWNSPEMLTKRALEFQQKKI EVLQLENESLKPKALFADAVDASKTSILIGDLAKLIKQNGIDIGQNRLFQWLRDNGYLIA RKGESYNMPTQRSLDLGIAEIKERTHNNPDGSIRISRTPKITGKGQIYFVNKFLHDKTA >gi|307679251|gb|GL456996.1| GENE 66 76106 - 76354 149 82 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282598765|ref|YP_003358829.1| ## NR: gi|282598765|ref|YP_003358829.1| putative phage excisionase protein [Enterococcus phage phiEf11] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9505_00042 [Enterococcus faecalis TX0109] hypothetical protein HMPREF9509_01195 [Enterococcus faecalis TX0411] putative phage excisionase protein [Enterococcus phage phiEf11] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_01195 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9505_00042 [Enterococcus faecalis TX0109] hypothetical protein HMPREF9495_00076 [Enterococcus faecalis TX2141] # 1 82 1 82 82 146 100.0 4e-34 MQITLAKTIDLQQAWMAKDEAIVYFGYQHHKPTFQKLLREFKEHKEFKDGYRLVTSCMPI IHIQKFDEFLVWREKNKYKRNK >gi|307679251|gb|GL456996.1| GENE 67 76376 - 76549 265 57 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256961389|ref|ZP_05565560.1| ## NR: gi|256961389|ref|ZP_05565560.1| predicted protein [Enterococcus faecalis Merz96] hypothetical protein PHIEF11_0040 [Enterococcus phage phiEf11] conserved hypothetical protein [Enterococcus faecalis R712] conserved hypothetical protein [Enterococcus faecalis S613] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_01196 [Enterococcus faecalis TX0411] conserved hypothetical protein [Enterococcus faecalis DAPTO 512] conserved hypothetical protein [Enterococcus faecalis DAPTO 516] predicted protein [Enterococcus faecalis Merz96] conserved hypothetical protein [Enterococcus phage phiEf11] conserved hypothetical protein [Enterococcus faecalis R712] conserved hypothetical protein [Enterococcus faecalis S613] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_01196 [Enterococcus faecalis TX0411] conserved hypothetical protein [Enterococcus faecalis DAPTO 512] conserved hypothetical protein [Enterococcus faecalis DAPTO 516] conserved hypothetical protein [Enterococcus faecalis TX2141] # 1 57 1 57 57 92 100.0 1e-17 MRKIYNLRRIAVLLIVFGLGLLVGGNFNPIIQNVYIGLFIIWTLFYDLALEDREVNK >gi|307679251|gb|GL456996.1| GENE 68 76546 - 76671 130 41 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTRKEKLQQTKKLADLWYQQQKNQIYIMQQKERREFRCLKQ >gi|307679251|gb|GL456996.1| GENE 69 76656 - 76811 223 51 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307286466|ref|ZP_07566567.1| ## NR: gi|307286466|ref|ZP_07566567.1| conserved domain protein [Enterococcus faecalis TX0109] conserved domain protein [Enterococcus faecalis TX0109] conserved domain protein [Enterococcus faecalis TX0312] conserved domain protein [Enterococcus faecalis TX1346] # 1 51 1 51 51 77 98.0 4e-13 MFKAVGKDSLKIYVVEDTKALVFQKLKEKYPDTAINKAVFPEALFIQETKK >gi|307679251|gb|GL456996.1| GENE 70 76868 - 77104 337 78 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282598707|ref|YP_003358833.1| ## NR: gi|282598707|ref|YP_003358833.1| hypothetical protein PHIEF11_0043 [Enterococcus phage phiEf11] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9505_00045 [Enterococcus faecalis TX0109] hypothetical protein PHIEF11_0043 [Enterococcus phage phiEf11] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9505_00045 [Enterococcus faecalis TX0109] hypothetical protein HMPREF9495_00080 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9519_01621 [Enterococcus faecalis TX1346] # 1 78 1 78 78 128 100.0 1e-28 MRVEVDSMQRIVLIDNHSPYGSLIFEKDAINNHVAVYQDSEDEEVRTVFESLDESAYFNQ VELIEGLQKVISLLKEGE >gi|307679251|gb|GL456996.1| GENE 71 77105 - 77782 657 225 aa, chain + ## HITS:1 COG:no KEGG:LM5578_2513 NR:ns ## KEGG: LM5578_2513 # Name: not_defined # Def: hypothetical protein # Organism: L.monocytogenes_08-5578 # Pathway: not_defined # 5 147 4 140 219 81 38.0 3e-14 MNENSENLKELFDGMYKLKSKLIQPRFDAEVAYTTKKGPMNFQYATLKAIEEAIRKAAQE SESGIDFQQNVVNENNALKVTTIITHVSGQYIVHGPFEFPNSGTNPQGLGSLTTYARRYS LSAAFGIAADKDDDGQTAAEKNNDTSKVNLISGKQLATLNDHIRQLSELSNSELDYVRNE LSKELNVDVNENMPSSMFNKAVEVLKQWIQQFQPQPEENITWGQS >gi|307679251|gb|GL456996.1| GENE 72 77782 - 78705 782 307 aa, chain + ## HITS:1 COG:no KEGG:JDM1_0973 NR:ns ## KEGG: JDM1_0973 # Name: not_defined # Def: hypothetical protein # Organism: L.plantarum_JDM1 # Pathway: not_defined # 1 306 1 285 286 140 31.0 1e-31 MTNELTTELQFNVDFKASKITIQNEAQLAEMVESAVKHYSTMIFTDENIPEAKKARADLN KVVTLLDDQRKEVKNQYDKPLKDFEEKIKKYTEKISEVSSEINESIKSYEEAEKQKRSKK LQKVIAEMSENYNVSIDEIEIPSSWTNKTAFTVKGEPNKKTIEEIAASMVAVASEKERIK NDKLIVENYAKAVGLDSFSWVALIDKGSTAPELIKEIDSAVALKKEQEERERAKKEHDEA IAALKTETINNKTVDTATGEIITEEAPKTCKKQQEKTVTLRLTAEHQKLVALNNFIINNG IQVEVIE >gi|307679251|gb|GL456996.1| GENE 73 78804 - 79382 298 192 aa, chain + ## HITS:1 COG:no KEGG:MPTP_1437 NR:ns ## KEGG: MPTP_1437 # Name: not_defined # Def: hypothetical protein # Organism: M.plutonius # Pathway: not_defined # 1 192 37 228 228 266 62.0 5e-70 MYFDYTGPREVEIRFIDPRKFSVAQRRFIFAMLEDIFSFTGQETEVLKEMFYLRFEALQG YEISLRNDSENTMDDATILANIILNFIFENNIPFRKGYDILPANQEYYFYKCITKRVCCI CGKTGADIDHFDKALGRRKRKSVDHTEYTYAGLCRCHHTEKHNIGITAFKKKYHVKGIKL NQETIKKLHIGG >gi|307679251|gb|GL456996.1| GENE 74 79387 - 80343 815 318 aa, chain + ## HITS:1 COG:no KEGG:LLKF_1041 NR:ns ## KEGG: LLKF_1041 # Name: pp112 # Def: phage replisome organiser # Organism: L.lactis_KF147 # Pathway: not_defined # 1 155 1 154 270 209 69.0 1e-52 MAEISWIKLSTSLPDNKKIKRIRKLPDGDRVILFWVFLLARAGESNQKGGLFLTDTLPYS DEDLAADFDFTVEFVKFAILTLEKYSMVTTYEDVIFIKNWEEYQAIDGMEKVKEQNRIRQ AKYREKQKQLSLSNVTSNVTRNADVTLSNGTDKDIDKEIDKEIDKDNKEESKKPPCKYSD EHLRLAQKLQNNLINDFPSEMKKVKIEKWADVFRLIEERDQQTIAAIDYVLDWLPTNSFW FGNIRSASKLRTQFEKLKFEIKNEKERGQQRTTYQRQNVRTENLPEWAKEPNKQQEEKLS PEEQLELDRQIKEYMEGK >gi|307679251|gb|GL456996.1| GENE 75 80347 - 80871 419 174 aa, chain + ## HITS:1 COG:no KEGG:EF2127 NR:ns ## KEGG: EF2127 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 20 85 26 91 110 79 51.0 4e-14 MTKYPTQELKNKRKAHVLFMSTEVMKNIFELGYPFEFYEASHQFAIHSPLGVIDYFAISG TWVVRKGQDRGKGIRKMKQYIKKRVGDYVEKVKVVKCSGYLDKEGNITNQIKQAMHFTDD ELANLAAEVAGGKGVNVVIPPEKPKQLREKAKEESFQEKTKKKTKSNQSWMNKK >gi|307679251|gb|GL456996.1| GENE 76 80999 - 81226 258 75 aa, chain + ## HITS:1 COG:no KEGG:EF1438 NR:ns ## KEGG: EF1438 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 75 1 75 75 137 92.0 1e-31 MKLTSVTFKPSAERFPPIVAIDLDQLTPDEYVTLRNLGYDTQLSKITKRTFEELEGHLGI RGDVAKKNGFYVLVK >gi|307679251|gb|GL456996.1| GENE 77 81283 - 81747 179 154 aa, chain + ## HITS:1 COG:no KEGG:EF2124 NR:ns ## KEGG: EF2124 # Name: not_defined # Def: methyltransferase, putative # Organism: E.faecalis # Pathway: not_defined # 1 154 1 154 160 288 88.0 4e-77 MKRILDACCGSRMFWFDKQNEQVLFMDNREHYEKLDSGHVIDVNPNLVADFRKMPFEDNS FYHVVFDPPHLLRCGNNSWLAKKYGKLNEKTWKEDIQKGFHECMRVLKPNGTLVFKWNEE QIKLSEILSTIDCEPLYGNKRAKTHWLVFMKAGE >gi|307679251|gb|GL456996.1| GENE 78 82090 - 82500 358 136 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315146082|gb|EFT90098.1| ## NR: gi|315146082|gb|EFT90098.1| phage conserved hypothetical protein TIGR01671 [Enterococcus faecalis TX2141] # 1 136 1 136 136 268 100.0 1e-70 MIPKFRARDQRGNWHIGLLTFMFGQYAIVNESDENSVYLIDKETVGQSTGLKDKNGVEIF EGDNLKIIEVTNEGISEYITDVIWEDCSFVFKSEGVDYYDSFLGAFSGDPNKTYPLFELL VIGNVWDNLKLLERTE >gi|307679251|gb|GL456996.1| GENE 79 82497 - 82664 207 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282598733|ref|YP_003358843.1| ## NR: gi|282598733|ref|YP_003358843.1| hypothetical protein PHIEF11_0053 [Enterococcus phage phiEf11] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_02668 [Enterococcus faecalis TX0411] hypothetical protein PHIEF11_0053 [Enterococcus phage phiEf11] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_02668 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9495_00090 [Enterococcus faecalis TX2141] # 1 55 1 55 55 87 100.0 4e-16 MKRLKISYIDLAVIIESIYYGEDEDVSDIDDLLKYLRNNGHLSTVLTVSRGISDE >gi|307679251|gb|GL456996.1| GENE 80 82657 - 83262 630 201 aa, chain + ## HITS:1 COG:no KEGG:EF2118 NR:ns ## KEGG: EF2118 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 24 201 17 184 184 179 57.0 8e-44 MNKQEFIETLEEIRANINRNAEISDYTDFSRGKKDAYNNAIGLAKQIDEPEKVVVPKFVA EWLDKHKYSTDIIDLFLSVEYATDSDGFVAEKWDYSGEFYDWLSNSADIQFTLCDAMRYG YEVEKEPTIHELKILPEYFEAVVSGNKRFEIRKNDRNYKKGDILRLNEYQEGQYTGDVHV SEITYITDYAQQDGYVVLGIK >gi|307679251|gb|GL456996.1| GENE 81 83396 - 83761 271 121 aa, chain + ## HITS:1 COG:no KEGG:EF1444 NR:ns ## KEGG: EF1444 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 121 41 161 161 226 97.0 2e-58 MTYSTDNTIRCYEIKVTLADLKSSAKQTFLGDYNYLVVTNELWEKIQANPDLKWKYSNQG ILIFSELRHNLGITSVKKAKKQNVTLGTRATVLESMVRSLNREVEKFYKVNPFWGLSEEV K >gi|307679251|gb|GL456996.1| GENE 82 83762 - 83944 285 60 aa, chain + ## HITS:1 COG:no KEGG:EF2830 NR:ns ## KEGG: EF2830 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 60 1 60 60 86 80.0 4e-16 MEQLLLTKTGENEIGINATGMDDNEIVFTLAAALIGYSKELGLTEAILNESMSVLWKDGE >gi|307679251|gb|GL456996.1| GENE 83 84127 - 84327 237 66 aa, chain + ## HITS:1 COG:no KEGG:EF2829 NR:ns ## KEGG: EF2829 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 65 1 68 77 62 47.0 6e-09 MSYPEVYILGRQVDGVYVEYSEPYLSKIEAELDKHHYEIGQSMSHDAGSWKILKYGRPIT LEVQHG >gi|307679251|gb|GL456996.1| GENE 84 84320 - 84409 91 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGKKKSKIKKKKRRLQEKAIANGTQNSKK >gi|307679251|gb|GL456996.1| GENE 85 84472 - 84888 359 138 aa, chain + ## HITS:1 COG:no KEGG:EF2024 NR:ns ## KEGG: EF2024 # Name: not_defined # Def: ArpU family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 138 1 138 138 218 84.0 8e-56 MIQLLKEVDFSQTRANARAVLKNFRRLDRIAGRSLVDVRSPIITDMPKGIKHGNKAEDAL IQMMDVEAERDAILTALMSLSIISRQILHYSFCVQDHYSNYKIAREVGYSERSIQRMKSE ALIEFAEAYRNGKIIAYK >gi|307679251|gb|GL456996.1| GENE 86 85352 - 85801 351 149 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282598758|ref|YP_003358851.1| ## NR: gi|282598758|ref|YP_003358851.1| SbcC domain protein [Enterococcus phage phiEf11] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_02676 [Enterococcus faecalis TX0411] SbcC domain protein [Enterococcus phage phiEf11] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_02676 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9495_00099 [Enterococcus faecalis TX2141] # 1 149 1 149 149 237 100.0 2e-61 METNNTFSNLLKNFDYPRIEPSMKYAEKLETGSNWLGDINREKKQLQELQKLANESTLKS EELLKQIAENTSYIKDLVMINRETQLNTEELTYVMKSIYKVSKAENKQEADSLFSQAIQV INDSGEAAGNIANLTSLLLGIYTFVSTII >gi|307679251|gb|GL456996.1| GENE 87 85856 - 86377 470 173 aa, chain + ## HITS:1 COG:lin1737_1 KEGG:ns NR:ns ## COG: lin1737_1 COG1475 # Protein_GI_number: 16800805 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 1 144 1 141 229 129 49.0 2e-30 MHIEKMKLSDLRPAEYNPRVKLNPGMAEYEKLKQSILEFGFVDPPIFNKNTGNLVGGHQR VTVAKELGLFDEIEVSVVDLPLDKEKALSIALNKISGNWDEDKLTELLNELTADNLELTG FDNEELEILIEDADIPNFEPGSIDDQGDLTKLEPKFVKCPCCGEEFDLRDVES >gi|307679251|gb|GL456996.1| GENE 88 86364 - 86972 305 202 aa, chain + ## HITS:1 COG:no KEGG:YpsIP31758_2230 NR:ns ## KEGG: YpsIP31758_2230 # Name: not_defined # Def: hypothetical protein # Organism: Y.pseudotuberculosis_IP31758 # Pathway: not_defined # 2 200 4 202 204 251 62.0 1e-65 MLKVDWATHEATKYACTHFHYSKSVPVGKLIKIGAWEDGQFIGVVIFSRGANKSIGSPYG LEQTECCELTRVALTNHKTFVSEILAKAIKFLKEFNPSMQLIVSYADTDQNHHGGIYQAT NWIYTGKTDGERYFIVNGKKTHPKSIHAKYGTGSQRLEFLHKHVDPKASIYESKGKHKYL MPLNKKIRKKIIKLSKPYPKAK >gi|307679251|gb|GL456996.1| GENE 89 87109 - 87297 235 62 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256617869|ref|ZP_05474715.1| ## NR: gi|256617869|ref|ZP_05474715.1| predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis ATCC 4200] # 1 62 22 83 83 92 95.0 1e-17 METFDYEVQQALEKQKIAEENNKIIRAAKAQWISNFKAGHIKLNTVKDLKDLIEIESHLK EL >gi|307679251|gb|GL456996.1| GENE 90 87342 - 88262 548 306 aa, chain + ## HITS:1 COG:no KEGG:Psyr_2837 NR:ns ## KEGG: Psyr_2837 # Name: not_defined # Def: hypothetical protein # Organism: P.syringae_B728a # Pathway: not_defined # 1 179 17 195 321 127 35.0 6e-28 MAKEKNEKKANSDKGEIKETNLKKCFFITPIGEKNSNEFKKLKAIVENVLNKVLEKYDYE LIIAHEIHSMGSIGDQVFTNIIGADLVISNLSGWNANVMYETAVAHSFGKPTIMICESGT ELPFDLINDRTIFFEDTIEGTGALIEELDKKIPKISEDSTADNPVTRVIRRKALEDDLKG ETDNDSRILGLLLDMDKRLSMYEDSNIIEKKKINTGNIERIRAKIYYKNEGNINVIDELE GYLFEKYRDTVQIVSVTSGNRYEDRNSEVMKVIIVNSLYSPAKIFKDIEITLGKLGMVDI SVKVFP >gi|307679251|gb|GL456996.1| GENE 91 88310 - 89104 404 264 aa, chain + ## HITS:1 COG:lin1733 KEGG:ns NR:ns ## COG: lin1733 COG5484 # Protein_GI_number: 16800801 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 5 224 11 252 294 108 34.0 9e-24 MDKKEQAKKYYEKGWKYKDISEKLSVPLNTLKSWRKRDKWERGGATKEVQPTNRGAPKGN QNAIGNKGNSRASPPKRNKNAVKTGEYETIFADMLSDEEKDIYSTMNDDPFFILDEEIRI LKIRQYRMLKRIKDAEAGLNDEEVERLQQLRKVKEPSVIDGKMVTVKREVLKDVQVTRKT FRKLDDILAIEDALTRVSNQLIKAIKQQKELLSTDKKSLLMEAQIEKIKLETDKLSGGSS NDEADSWKQAVINAANKRAVEENE >gi|307679251|gb|GL456996.1| GENE 92 89097 - 90551 938 484 aa, chain + ## HITS:1 COG:no KEGG:Cbei_1636 NR:ns ## KEGG: Cbei_1636 # Name: not_defined # Def: hypothetical protein # Organism: C.beijerinckii # Pathway: not_defined # 15 461 9 454 470 534 58.0 1e-150 MNKEFIPFADIGAAIDYYYDKPVAFCQDILHLDPDEWQDKVLDDLAKFPKVSVRSGQGVG KTALEAGAILWFLTCRPYAKVIATAPTMKQLYDVLWAEVAKWLNNSLIKDLLKWTKTKIY MVGDSERWFATARTATKPENMQGFHEDHMLIVVDEASGVADPIMEAILGTLSGFDNKLLM CGNPNNIEGVFYDSHNTDRDKYRTHKVSSYDSKRTNKENIQMLIDKYGENSDVARVRIYG EFPKGALDSFISLEIVEFAKDINISDSELKHVREGHIGVDVARFGDDSTIVFPRIGAKAL PFEKYSKQDTMQTTGRVLKAAKRMMDDYPTIKKVFIKVDDTGVGGGVTDRLKEVISDEKL PYEVIPVNNGESSTDDYYANKGTQIWGDVKELLEQNISNSINGQGPTIELPDNANLIKEL STRKFKMTSNGKIRLESKEDMKKRNVGSPDIADALTLAFYEPFRPEPINVKKAINTFKKL GLSR >gi|307679251|gb|GL456996.1| GENE 93 90556 - 92169 1106 537 aa, chain + ## HITS:1 COG:no KEGG:LEGAS_1590 NR:ns ## KEGG: LEGAS_1590 # Name: not_defined # Def: phage portal protein # Organism: L.gasicomitatum # Pathway: not_defined # 5 508 4 497 521 354 40.0 5e-96 MNNKLLNGSRFDKEANLVYKVPVSKLPTRIMQYSNGEKEEVVDFEHQDVFNMIVKFVRHH KEKQVPRLKELKRYSLAQNNIKFTEDKSENRADNKIANDWARFIVNFKKGVLLGNPLKYN GDKTIADKINDFSSKSNEDYHNQLMLDDLLVYGRAFEYIGRDEYGKEMLAKFSAEETFVI YDTTTNKNSVCAIHCYDLEFNDETFSYIDIYANDGYFYQHESKNQDYEQSKLIDKYQTFF DSIQVNEWINNEERLGDFETVLDNIDAYDLSQSSMANFQQDSSEAYLVIKGNPETAIGDE EGNSAVDVLNDMIKARLLILGDKKYYGDGQTGSDPDAYYLKKEYDTQGTEAYNDRLVSDM LRFTSLIDFTDENIGSNQSGIGFRFKGWGSDNDRKNKERMVKKAIMRRLRLLTYSWSLKD NLNKPTGLAEKVKSFFVSRDNDKELLFEKVNAIEILFTPNVPQSDKEIMEVIAGMVGIVS DETLCEMAAKLTGVPVQTELNRLKKENQPDTLSDEEAAKLKEKQAEFLANQSETEED >gi|307679251|gb|GL456996.1| GENE 94 92175 - 93113 642 312 aa, chain + ## HITS:1 COG:SPy0975 KEGG:ns NR:ns ## COG: SPy0975 COG5585 # Protein_GI_number: 15674985 # Func_class: T Signal transduction mechanisms # Function: NAD+--asparagine ADP-ribosyltransferase # Organism: Streptococcus pyogenes M1 GAS # 3 296 8 309 541 140 32.0 4e-33 MSYLKDREDAWIKEQMKLDRNREKEIVKQLQNAIDAIQTEIEANWDRFSNGQKITISEAR KMANKMDVKRFERKAKEYVKNKDFSPQANKELKIYNLVMRVSRLELLKSQIGLELITLFD ELDKWGYSQLTEAAKEEYLRQAGILGETVQENYSSKVRKIVNASFKSSDFPSFSDNIWQN FVEMKADLEKIITQAITQGKNPRAVAKEIAKFLKPNQLNIRYKLNRLMMTEISGIQTDIQ KQSYLDADIEEYDYIAEPFACEICKKVAKGSPYRVLKMKKGINAPYMHPHCKCSTVPKVS EDYDKSLKERCL >gi|307679251|gb|GL456996.1| GENE 95 93114 - 93383 156 89 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282598771|ref|YP_003358795.1| ## NR: gi|282598771|ref|YP_003358795.1| hypothetical protein PHIEF11_0005 [Enterococcus phage phiEf11] hypothetical protein HMPREF9509_02685 [Enterococcus faecalis TX0411] conserved hypothetical protein [Enterococcus phage phiEf11] hypothetical protein HMPREF9509_02685 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9495_00108 [Enterococcus faecalis TX2141] # 1 89 1 89 89 146 100.0 5e-34 MDNLYKCNQCHKYTPLVRKSENITKDIEHHYAECANCGYKATIMYMNTEIKLLMHEQRKT NFGTKKKGKLTEKLNRLISELRKEVEESL >gi|307679251|gb|GL456996.1| GENE 96 93409 - 93507 148 32 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNDDPYDYLDADYEEYLRKEEVNESTKETSSD >gi|307679251|gb|GL456996.1| GENE 97 93476 - 93754 283 92 aa, chain + ## HITS:1 COG:no KEGG:CLJ_B1819 NR:ns ## KEGG: CLJ_B1819 # Name: not_defined # Def: gp9 # Organism: C.botulinum_Ba4 # Pathway: not_defined # 1 92 2 81 81 80 46.0 3e-14 MKARKKPVVIETVIFLGFYGKDRNFSERPKWLERAIYVDKKIEFFDVPEKLTIHTIEGPI YAIPGDYIIKGVNGELYPCKPDIFEKTYEIIE >gi|307679251|gb|GL456996.1| GENE 98 93884 - 94525 726 213 aa, chain + ## HITS:1 COG:no KEGG:BH3529 NR:ns ## KEGG: BH3529 # Name: not_defined # Def: hypothetical protein # Organism: B.halodurans # Pathway: not_defined # 2 160 10 179 239 65 35.0 2e-09 MKTKKLLLPMHLQFFADNLDTGTGGTDQPAGGQEQTPPGDGGKDKGNGKTFSRDEVAKMI AAEVSKTKEAWEKELQEKQEEADKLAKMNDQEKNDHEKQKLLEKIKELESAQNLAEMSKT ATKMFSDKGIQATEGLLSLVVKETAEETSENVKAVVKLIETERETIKADFEKRIGSKLPL DGNADASLSRGAQMAKQANNQNKAPENNLWATN >gi|307679251|gb|GL456996.1| GENE 99 94538 - 94879 414 113 aa, chain + ## HITS:1 COG:no KEGG:LSEI_1928 NR:ns ## KEGG: LSEI_1928 # Name: not_defined # Def: hypothetical protein # Organism: L.casei # Pathway: not_defined # 2 100 1 99 167 138 66.0 6e-32 MVYVKKTQTYQDINFLKSEKFISFTKQVDETTEGVVKGVLPAGSVFPKNDATAEGITIND VDVSNGPQPVGVIVEGHVLIKRLPAEPSSEAQKAMRELKFYDANGKMLAVPTA >gi|307679251|gb|GL456996.1| GENE 100 94902 - 95915 1088 337 aa, chain + ## HITS:1 COG:no KEGG:LCABL_13300 NR:ns ## KEGG: LCABL_13300 # Name: not_defined # Def: hypothetical protein # Organism: L.casei_BL23 # Pathway: not_defined # 1 332 1 335 346 376 57.0 1e-103 MANIAELFSQKNVLDYVNNRQAPVLLGETLFPARKVQGLEFDVLKAGSKIPTIASVHAFD TEAEIASRVGSKTAQELAFIKRKIQLKEKDLIALRNPRTAEEQRYLEQEVYNDVYSMVSS VNARVEKMRMEVLANGKVTLDENGLDLVVDYGVPADHKDTADFSAPDTDIIGLLTEWASK LDVMPTRILTSTKVRNAILKNDGIKAFFKTSGLLPNIGSLNQMLQQFNLPTIVTYDAKYN KENAEGVLVKERYFPENKLVMFGDENPGESIFGVTPEESRLLSTGSNNYTVGNIFAMVYE SNLDPVGTWTKASGTALPSFPEADNVFQATVLPDSKK >gi|307679251|gb|GL456996.1| GENE 101 95989 - 96321 335 110 aa, chain + ## HITS:1 COG:no KEGG:LACR_1139 NR:ns ## KEGG: LACR_1139 # Name: not_defined # Def: hypothetical protein # Organism: L.lactis_SK11 # Pathway: not_defined # 3 109 2 109 110 85 47.0 5e-16 MPSITDDITKLLNSPANEKLEVIERRTRERLNSLLNVSETPSKFDSIIYEVVLKRFNRIG QEGMISYSQEGLTMAFPDSDFSEYEKQINDYLNEEKEVQYKKLRGKARFV >gi|307679251|gb|GL456996.1| GENE 102 96318 - 96653 290 111 aa, chain + ## HITS:1 COG:no KEGG:LACR_1140 NR:ns ## KEGG: LACR_1140 # Name: not_defined # Def: hypothetical protein # Organism: L.lactis_SK11 # Pathway: not_defined # 1 101 1 101 103 132 59.0 5e-30 MRYTDEITFVKKSSESHYDPNSGEWIEEEPFRKTTDVNVTDIGTDRSITIFGSIKEGAKV IRTQPLFVIPEFDYIEFEGKAWEVITSRVPALRNSLIIQEVIIDGNKSSKN >gi|307679251|gb|GL456996.1| GENE 103 96628 - 97008 250 126 aa, chain + ## HITS:1 COG:no KEGG:M28_Spy0985 NR:ns ## KEGG: M28_Spy0985 # Name: not_defined # Def: phage protein # Organism: S.pyogenes_MGAS6180 # Pathway: not_defined # 6 126 10 121 121 86 45.0 4e-16 MAISQVRINGLAGISKKLKRNAQLDDVKKVVRNNTAELTANMQAEAGKVLTGHREGKKFV KPTGATKRSIVMRLSNNGFSGHTGPGTEYAPYLIHGTRFMVKRDFFLPPLKQQKVKFRTD LERLMK >gi|307679251|gb|GL456996.1| GENE 104 97005 - 97394 235 129 aa, chain + ## HITS:1 COG:no KEGG:LACR_1767 NR:ns ## KEGG: LACR_1767 # Name: not_defined # Def: hypothetical protein # Organism: L.lactis_SK11 # Pathway: not_defined # 1 128 1 128 129 185 67.0 6e-46 MIKTRDQSIFDEVYKKCQSLGYEIYDYKPMNDVGYPFVELEDTQTLHQANKTDIKGSVTL NLSVWGLAKKRKQISDMASAIFAEALSISETEGYYWSLNIQSSGIRLVDDISTNTPLKRA MISLEFKIL >gi|307679251|gb|GL456996.1| GENE 105 97410 - 98003 652 197 aa, chain + ## HITS:1 COG:no KEGG:MPTP_1482 NR:ns ## KEGG: MPTP_1482 # Name: not_defined # Def: phage tail protein # Organism: M.plutonius # Pathway: not_defined # 10 171 5 166 171 179 56.0 4e-44 MANEAKVAAKGIDIILLFRLLKKSKEEAAWKLAFQTEHENTKTKDSDSVATKDGPIRIPG SLEIDFSATSILSVGDPYVDQLEEALDNDDIIEIWEINKAEKGTGDNVDKYKATYYQGYV TSFGKSPNAEDTVEVSLEFGINGKGAKGFATLTADQEEVVQYVFKDTTIEKDDPEKVDSP SVESVTPTFDGASTELS >gi|307679251|gb|GL456996.1| GENE 106 98019 - 98477 636 152 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307292403|ref|ZP_07572259.1| ## NR: gi|307292403|ref|ZP_07572259.1| hypothetical protein HMPREF9509_02696 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9509_02696 [Enterococcus faecalis TX0411] # 1 152 1 152 152 213 99.0 6e-54 MVDTFKIYKGQTEVVSGTSPLTITGMEPNTSVSAGEYQVTRVVNGKESERVDIPAFKTLS IAVTGLDFSPKTSTADAGTAGSRQITATVLPENATTKKVTYDISPVTEGLAVSETGNITW TESVPAGVYTTTGTTEDGKKTAQHTLTLNNQA >gi|307679251|gb|GL456996.1| GENE 107 98532 - 98882 395 116 aa, chain + ## HITS:1 COG:no KEGG:SPy_0992 NR:ns ## KEGG: SPy_0992 # Name: not_defined # Def: hypothetical protein # Organism: S.pyogenes # Pathway: not_defined # 1 116 1 116 117 100 43.0 2e-20 MQIEIKGKKYNCIFGVKFIRELDKQHGVVRNDVNLGMGLTTLLPQLVSGNIVVLSDVLYT ATITEKSRPSKDEVDEFVETVDDIEALFDETLKYLEESNAGKLTVRNFKKALMENK >gi|307679251|gb|GL456996.1| GENE 108 98975 - 99232 156 85 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282598753|ref|YP_003358808.1| ## NR: gi|282598753|ref|YP_003358808.1| hypothetical protein PHIEF11_0018 [Enterococcus phage phiEf11] hypothetical protein HMPREF9509_02698 [Enterococcus faecalis TX0411] putative phage protein [Enterococcus phage phiEf11] hypothetical protein HMPREF9509_02698 [Enterococcus faecalis TX0411] conserved hypothetical protein [Enterococcus faecalis TX2141] conserved hypothetical protein [Enterococcus faecalis TX0312] # 1 85 1 85 85 140 100.0 5e-32 MTLYEYEVRLLAFQLKRLDHERDLYLQAWLNNQIKATKGKKSEPYFKEFNKFFNYEEQEK LILGKSLIDEKIDIGAIDLLRKANK >gi|307679251|gb|GL456996.1| GENE 109 99248 - 102655 3459 1135 aa, chain + ## HITS:1 COG:no KEGG:M28_Spy1236 NR:ns ## KEGG: M28_Spy1236 # Name: not_defined # Def: phage protein # Organism: S.pyogenes_MGAS6180 # Pathway: not_defined # 33 1107 23 1064 1093 607 39.0 1e-172 MESYSVEAILTATDRTFSSTMSSAERSMAGVNKQSGELGDGLDKSTTKGNQLGKSILSIG AGVGAVKLVSTAVNMVKDSVEGAINRFDTLNKYPVVMKALGYSTEDVDRSMNKLSDGIDG LPTSLDEIVASTQQLSISTGSLSKGTDTAIALNDAFLASGASTADATRGMQQYIQMLGKG EVDMQSWRTLQETMPIAMDKVAKSFKEQGVNSVNQLYDALKEGDITFNEFNNRLIELDKG VGGFADLAKKNSKGIKTSWANIKTATVKGVTTVIKSFDELSKAVTGKNIAENLDSLKNVV NITFKAIDAAIQSTIPLMKLFGKAITSIGTALTPLLPTIASFAATFTALKVIQQVTGYIK QSELAIKAYTTAISLYNGISKLATLSTTALGRAWMLNLAADKANSAAIAIKTGLLVAQNT IVGVLTGTISLATVATTVFSTAMKLLLGPIGWVTAAIGGLVAVGVNLWKWLNKETESTKA VKKEQESLMKTTDDLIKKNQEHAQSRKDEAIELDNTKEKFQSMISEMEMLSAKEKLSNSE KKRMVEIVEELNGKMTGLNLVYDDQKNILSEMPGTIQQQVDAYNALDEASQAQENINQML KERNDNEAKLMEINAAREKWNQTLKESGGNTKEARENIEKLGEQEQVLKGVQQELTNEII NTANAHEQSMQRASQAVENGVLNQTVSYNALSGKTKETMDAMRSEYSSLEEKVGSAFDVI EQKQAISVDQMAANLQKNQEAVAQWGQNISTLAERHVDQGLLEQLRKMGPEGAAQAAELV NASDEQLQRLNDVYRNTGETSMNAMKEGYQLGKNGLNEEIQALIPTQKETLMTQIKNTDF NSVGLSVTDDFKAGIENGRTAVEEMTKGIVPKVGEDMKGEVQKADFRGIGKSIPQGLEKG VDDGKGVPVKTSNQMIDDIVSGARKGLDSHSPSRVFHSIGEDVDSGLSNGIEQNAMNPVR AVEAIVDKIISAMDKLPSEMNSIGANAIDGLTNGINANANSALAAARGVADQIVSTMKSA MDIHSPSRVMRDEVGKMIPAGVAVGIDKYSNFVEKSMQRLSKKVAMPALDNLNSNLSFSG GSQSLAFAGDVSSKFTVEVPVIFDSSEVARVIAKPMSKELQNQQDKKNVSLGRRR >gi|307679251|gb|GL456996.1| GENE 110 102656 - 103585 805 309 aa, chain + ## HITS:1 COG:no KEGG:EF1289 NR:ns ## KEGG: EF1289 # Name: not_defined # Def: tail protein, putative # Organism: E.faecalis # Pathway: not_defined # 2 309 1 308 308 509 78.0 1e-143 MLYNFIDVNEQQTKASLPSEAMNFNGSFLEDLVPGYRTLSVVGRELAPTEIQSYQLGIRD GMRHVYARIPERELTVKFKVEANSNEAFRDSFNRLNVALFTEKDVQIWFNDEPEMLWSGS KSDIDAVPEGLNRVVGTFTILLNNPYKYTRSDATSVMWGSPTITFQANYLMGNTGSGAVD LPIVIEGGAYWGSTMITFQNRSYLMGDNGQEVKPIEIYPTVEGLKVKPIITIEGTGRGVW IKTRSDTIDIGDFDKSEIVIDTEQFNITKNGKPMIRPMNDFYIYPNEPLYIQAKDSTFNL TIRYPNRFL >gi|307679251|gb|GL456996.1| GENE 111 103602 - 105617 1354 671 aa, chain + ## HITS:1 COG:no KEGG:EF1290 NR:ns ## KEGG: EF1290 # Name: not_defined # Def: structural protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 404 1 404 485 620 68.0 1e-176 MLMAMDLKREYTAVLDNAYQVSYEKIENQIGNLEFSMPLDDPKNEFLQEMLWVELTDNEN EYIGLYRVMPSTVRKDASNNSITYTANEALCTLLDTVLFGYHELVNRKTVDVINYLLNKQ RTKHWVLKKCEFTRYFSYAWENENGLADALFSIPQAFDEDYMWQWNTKVYPFELSLVKPP KEPIARIQEGYNMQGFEIERDPNNLVNRVYPLGAGEGVNQINIKSVNKNIPYVEDAKSIK EHGLVEYVWVDQRFTVPQALKDNAINMLKKWAQPKISWDVTAADLLKLTDEPLSIDKLRQ GTVIMINTDDFGSINLRIKKETKQDVFGAPQDIQLELGNLSDDFTTTMSDLKRKQEINET YSQGATNILNYSYQDNCEKAYPAEIEFFLDDDVFHVNTVELTFKTKRYRGYTKAVKGGGA TVKSTSAGGASTQTSSAGGGSVVSSSAGGGGSTTSGSGGGSYQGGSTNTDGGSAQTSSAN GSHDHLMFNVIQGPPQTLPKITLRAGGGGEIYTEARGGTFRTASAADNHTHTVNVPSHSH RFNIDIPAHSHVVSIPNHTHSISVPSHSHQVRIPAHTHQITLPDHSHPLEWGIYEAPSSA TSVDIVVDGTTIPVHDTSQQRLNIVNYLRKTSGGKISRGNHTIKIIPNKLARIEAQVICR VFIQSQLGGQF >gi|307679251|gb|GL456996.1| GENE 112 105618 - 105791 296 57 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256961421|ref|ZP_05565592.1| ## NR: gi|256961421|ref|ZP_05565592.1| predicted protein [Enterococcus faecalis Merz96] predicted protein [Enterococcus faecalis E1Sol] hypothetical protein PHIEF11_0022 [Enterococcus phage phiEf11] conserved hypothetical protein [Enterococcus faecalis R712] conserved hypothetical protein [Enterococcus faecalis S613] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_02702 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9510_01212 [Enterococcus faecalis TX0470] hypothetical protein HMPREF9492_00579 [Enterococcus faecalis DAPTO 512] hypothetical protein HMPREF9493_00667 [Enterococcus faecalis DAPTO 516] predicted protein [Enterococcus faecalis Merz96] predicted protein [Enterococcus faecalis E1Sol] hypothetical protein PHIEF11_0022 [Enterococcus phage phiEf11] conserved hypothetical protein [Enterococcus faecalis R712] conserved hypothetical protein [Enterococcus faecalis S613] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_02702 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9492_00579 [Enterococcus faecalis DAPTO 512] hypothetical protein HMPREF9493_00667 [Enterococcus faecalis DAPTO 516] hypothetical protein HMPREF9510_01212 [Enterococcus faecalis TX0470] hypothetical protein HMPREF9495_00125 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9503_00186 [Enterococcus faecalis TX0043] hypothetical protein HMPREF9519_01228 [Enterococcus faecalis TX1346] # 1 57 1 57 57 97 100.0 3e-19 MRLTVKLISKQEEFIINDESGKTLDDYFAELIDNSSPFIKIGNRILQKATIEYINAE >gi|307679251|gb|GL456996.1| GENE 113 105802 - 107565 1694 587 aa, chain + ## HITS:1 COG:no KEGG:EF1291 NR:ns ## KEGG: EF1291 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 468 1 468 589 569 66.0 1e-160 MAIEQIKETDTLNQGRIKINAILDQSNTAVEKINDYQSQLTEGINDAKKIADDAGKEAVQ IAEQAGNQANETANQALTNSQTAINTSNQAVSTANNNKQEFDALRNDFEKLVGEAGDSNP EIVQARTDTQGVTQSTLATRLQVDFNDRMTKSEGVSLLSGTTNVKIPMDFTGKTAGNTAT NANQYFTDVTAKVLKKPKDTWNEISQSDYNKLVSRDDSGVSSGSTQNGVIPQQLGVFNAL EAAKKLIPQNFEGLSQEEAVVLLKDSFVAFTISERVKATSPNNKTIKVSTYIESTDSWTT QIQENAGEYKDLSVQVTDKNFITSDGLIYLISYTDPSNGVTTANLDVDYSAIQLEISINA QDVLAKSGFVREEQLKEHTESQDNPHKVTASQVGLGNVKNYGFATDSEASAGTSTTKYMS PKNVADAIKGQAVTQTGDQEIAGTKDFMNPPKIAGQTVISEKVIAFSAPNTVSVSGTGVK VIPISQKVITNNEFFELSANKIKVLKDGIISVVTSYTTNVPAGWCNIELTKNNAVMNRSN QGTGGLHAAGLTDVFDVKAGDTIAFQSNSNQSSYTVLYLRGFLRYLT >gi|307679251|gb|GL456996.1| GENE 114 107645 - 107866 223 73 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256961423|ref|ZP_05565594.1| ## NR: gi|256961423|ref|ZP_05565594.1| predicted protein [Enterococcus faecalis Merz96] conserved hypothetical protein [Enterococcus faecalis R712] conserved hypothetical protein [Enterococcus faecalis S613] conserved hypothetical protein [Enterococcus faecalis DAPTO 512] conserved hypothetical protein [Enterococcus faecalis DAPTO 516] predicted protein [Enterococcus faecalis Merz96] conserved hypothetical protein [Enterococcus faecalis R712] conserved hypothetical protein [Enterococcus faecalis S613] conserved hypothetical protein [Enterococcus faecalis DAPTO 512] conserved hypothetical protein [Enterococcus faecalis DAPTO 516] # 1 73 1 73 73 120 100.0 4e-26 MSNEIVVAVIGLVGSTFGAFIGVVASANLTAYRIEQLEKKVEKHNGVIERTFKLEGRMQE AEHDIIELKGAKK >gi|307679251|gb|GL456996.1| GENE 115 107863 - 108066 262 67 aa, chain + ## HITS:1 COG:no KEGG:EF2803 NR:ns ## KEGG: EF2803 # Name: not_defined # Def: holin # Organism: E.faecalis # Pathway: not_defined # 1 67 1 67 68 111 95.0 7e-24 MILPDKYYKIIKWGVLTVLPAISVLVATLGKGYGWQQTDMAVLTINAIATFLGVVTGVSA YNLKDKE >gi|307679251|gb|GL456996.1| GENE 116 108071 - 109330 1429 419 aa, chain + ## HITS:1 COG:SPy1006 KEGG:ns NR:ns ## COG: SPy1006 COG3757 # Protein_GI_number: 15675010 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Streptococcus pyogenes M1 GAS # 91 240 214 360 444 142 48.0 1e-33 MKKKILVGALIALFFMPLNVFAAKGDQGVDWAVYQGEQGRFGYAHDKFAIAQIGGYNASG IYEQYTYKTQVASAIAQGKRAHTYIWYDTWGNMDIAKTTMDYFLLRIQTPKNSIVALDFE HGASSDVNANTETILYGMRRIKQAGYTPMYYSYKPFTLQYVDYQRIIKEFPNSLWIAAYP SYEVTPEPLYAYFPSMEGIGIWQFTSTYIAGGLDGNVDLTGITDSGYTDNNKPETDTPAT DAGEEIEKTPNSDVKVGDTVKVKFNVDAWATGEAIPDWVKGNSYKVQEVTGSRVLLEGIL SWISKGDIELLPDATIVPDKQPESIHVVQYGETLSSIAYQYGTDYQTLASLNGLANPNLI YPGQTLKVNRSVVSNVYTVQYGDNLSSIASKLGTTYQALAQRNRLTNLNLIYPGQTLIY >gi|307679251|gb|GL456996.1| GENE 117 109343 - 109723 404 126 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315172153|gb|EFU16170.1| ## NR: gi|315172153|gb|EFU16170.1| hypothetical protein HMPREF9519_02873 [Enterococcus faecalis TX1346] # 3 126 11 134 134 210 100.0 3e-53 MKSEIKKHIRQLLCDYKKIEKQLKKYEDALVYPQSSFSLYFEEKSNEKISLNQIVFHKFF LNTVEEVLSDATSDVRDIFISKYKNGYPRKKNEIVAYETYLSLSTIKRRDSEFLEELARQ LGWLEV >gi|307679251|gb|GL456996.1| GENE 118 109812 - 111077 1091 421 aa, chain + ## HITS:1 COG:TP0155 KEGG:ns NR:ns ## COG: TP0155 COG0739 # Protein_GI_number: 15639148 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Treponema pallidum # 2 137 237 367 371 87 37.0 4e-17 MADTWLSPLAVSYQATQEWDEPDYLSGGQAGIHGGIDLAPKAGTNPPVYSAKSGTVEEVV PNHPIGGNYIVIRHMDNYWTYYGHLATINVSVGQQVTNQTVLGLCGATGGATGIHLHFEV WRGGKWQRINPREVINLDGSGRDSSNNGGNGGIYTGGALLNAGKSISESNIRLIISAGKK YNIKPSFMIAQMFIESHWGDPSISIVGSKDNNWAGISEPFSVPADLGINMSRGSARPVGE GGYYIHFATMNDFFKAYAFVLSKRNGLYNVEGANSIEEYCKGLFRIGGANSDYAATGYQN YFNMLIPTYNSINKQNPGKLAQIDASTEEITNNGGLTTMQCLYERPINPNTGALDINGSA TTMMFCNGVNTRRVYHNDEVNIVKELYRKNNGKEIPVYYKKDWPKTSPWYIRLEAMFPVV K >gi|307679251|gb|GL456996.1| GENE 119 111080 - 111160 60 26 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLIYQNKFQTSVNKNNPILLGIGLFT >gi|307679251|gb|GL456996.1| GENE 120 111141 - 112643 1093 500 aa, chain - ## HITS:1 COG:no KEGG:BBPR_0060 NR:ns ## KEGG: BBPR_0060 # Name: not_defined # Def: hypothetical protein # Organism: B.bifidum_PRL2010 # Pathway: not_defined # 4 498 33 539 539 119 23.0 3e-25 MKYFFKENKGLAIYSFLMVFATYGIKLFNNTYAIDTMHLMTNYRGYLKHWVSIGRPGLVA LKLLTYNYVNVYFLNLLAIIFFAIATILLCYYVDLSTKQIYNKKYLYVIPSIFPTSQLFS EQFYFVLQNFEFSLGICLVILSLIAIYHIPNKIFKLFGFLLLTFTLTMYQSFFVFACTLI LFKILMALYFAQLNDLKISFKDYAFKIGHFILLAISSLVLSQLMAMLAKKVLNVESSYLD NMILWGKRPLIDSINDIKDYAKELFFPPVGDTFFTPLFLICVLLLVIVLINMSYLKRKNV FFIFITLLGILITPLMFTVLGGKRPAIRGEVPNFPAVLALLLIFIMIYWGYNFVLKHLLV GIVIIFTFIQVRETTNLEYSEYLTAEEDLRTAEMITNNIYSMEIENPESYKLLMYGNRSP RNVSNIKGETNGVSLFEFMPNSVHTSLNTLVYMKTFGLNFNDPTPEDFEKHKALQAEMNV WPSKDSIRVVDDCIIVNLSK >gi|307679251|gb|GL456996.1| GENE 121 113009 - 113590 313 193 aa, chain - ## HITS:1 COG:no KEGG:EF2795 NR:ns ## KEGG: EF2795 # Name: not_defined # Def: LysM domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 22 181 124 285 354 92 38.0 1e-17 MKKSLSLVFALLLLTACTNENTKTENTKGSSTTVTSTVKESSNNSINEKNILSTNTTTTS TADRKSSQTEEEQSHTEDPASLSSFVGGWGIPQSGNFFFINPDGKMSGSGQPNGVIQSPN FLSNADGSITMNFIINNTSLSFTKNLDGTLSTENQIYSYLGNITLEQWLELKNKGQMSSE QQTGILEASSQTP >gi|307679251|gb|GL456996.1| GENE 122 113961 - 114341 526 126 aa, chain - ## HITS:1 COG:no KEGG:EF2205 NR:ns ## KEGG: EF2205 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 126 1 126 126 231 99.0 5e-60 MGLFDGLLGNATQNNNETAEKELRDVLIPNEKVDMAFTLVRDLIVFTDKRLILVDKQGIT GKKVDYKSIPYKSISRFSVETSGHFDLDAELKIWISSAELPSVSLQFRKDKDIVAIQQAL AAAVLS >gi|307679251|gb|GL456996.1| GENE 123 114601 - 115839 1620 412 aa, chain - ## HITS:1 COG:SP0278 KEGG:ns NR:ns ## COG: SP0278 COG2309 # Protein_GI_number: 15900212 # Func_class: E Amino acid transport and metabolism # Function: Leucyl aminopeptidase (aminopeptidase T) # Organism: Streptococcus pneumoniae TIGR4 # 1 412 1 412 413 514 62.0 1e-145 MTLENFNENLKKYARLIAETGVNVQDNHTVVLQISVNQAPLARLITEEAYRLGAAEVIVQ WSDETIQREFLAHAATDRIENVPQYKIDQTDDWIAKGASRISVVSSNPDALAGVDAQRVA AFQAANGKALVNLRKATQANKVSWTVVAAASEGWAAKVFPELATSEEQVDALWNEIFKTT RIYEENPVIAWDIHDKKLQEKAAELNEQQFTALHYTAPGTDLTIGLPKNHLWEGAGSYNA RGEEFMANMPTEEVFTAPDSRRVDGYVSSTKPLSYAGTIISGMKFTFKDGKVVDFSAEQG EEALKNLLAIDEGAKHLGEVALVPDPSPISQSGLIFYNTLFDENASNHLAFGSAYAFNLQ GGTEMSEEELAEAGLNRSQTHVDFMVGSDKMNIDGIKEDGTIVPVFRNGDWA >gi|307679251|gb|GL456996.1| GENE 124 116090 - 116662 707 190 aa, chain + ## HITS:1 COG:FN1004 KEGG:ns NR:ns ## COG: FN1004 COG1309 # Protein_GI_number: 19704339 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Fusobacterium nucleatum # 1 175 1 174 188 69 27.0 3e-12 MARKKTITKEQILTAAYEVVATEGFSKFTARNIANKMKCSTQPIYLEFKNMDDLRDALFQ KIHKYLAKEVFPVKHTGNTIVDLALNYIHFATSESKLYRALYLEEYGGGKKMQEFSYHYF TEAVKADPEYANLNDVQIDSLHMGTWVVATGVAALMTSGIIHPSEEQIIHLMKDSIEAIL ERDEPIDIDL >gi|307679251|gb|GL456996.1| GENE 125 116820 - 117293 519 157 aa, chain + ## HITS:1 COG:CAC0262 KEGG:ns NR:ns ## COG: CAC0262 COG3476 # Protein_GI_number: 15893554 # Func_class: T Signal transduction mechanisms # Function: Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) # Organism: Clostridium acetobutylicum # 3 157 10 165 170 82 35.0 4e-16 MNRVKDKRLWLSIVGITGLGLLSGLFSVNAREYYQALRLPSFAPPGWLFGPVWLVLYIFM GITFYFILVHPNKQQKKRMITLFILQFIANFFWTFFFFSLQNNLLSVIDISLLWLLLIVQ QWDYLRYKLITRGWLMIPYILWVTFAAALNYSILFLN >gi|307679251|gb|GL456996.1| GENE 126 117368 - 117811 689 147 aa, chain - ## HITS:1 COG:SPy0721 KEGG:ns NR:ns ## COG: SPy0721 COG0716 # Protein_GI_number: 15674777 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Streptococcus pyogenes M1 GAS # 1 145 1 145 149 173 73.0 1e-43 MTLAKIVYASMTGNTEEIADIVAEAFEDLELEVEIDECTQVDAADFEEADICVVATYTYG DGDLPDEIVDFYEDLQEIDLSGKIFGVCGSGDTFYDDFCKSVDDFEAVFTQIGAKKGADS VKVDLAAEEDDIQRLEEFAKKLATAAE >gi|307679251|gb|GL456996.1| GENE 127 117986 - 118750 1011 254 aa, chain + ## HITS:1 COG:lin1821 KEGG:ns NR:ns ## COG: lin1821 COG0024 # Protein_GI_number: 16800888 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Listeria innocua # 1 250 1 250 252 359 66.0 2e-99 MITLKSPREIEMMDESGELLADVHRHLRTFIKPGITSWDIEVFVRDFIESHGGVAAQIGY EGYKYATCCSINDEICHGFPRKKVLKDGDLIKVDMCVDLKGAISDSCWSYVVGESTPEID RLMEVTKKALYLGIDQAQVGNRIGDIGHAIQTYVEGEGYGVVRDFVGHGIGPTIHESPMI PHYGEAGKGLRLKEGMVITIEPMVNTGTWRMKMDPNGWTAYTEDGGLSCQYEHSLAITKE GPRILTSQGEELTY >gi|307679251|gb|GL456996.1| GENE 128 118766 - 119674 851 302 aa, chain + ## HITS:1 COG:lin1818 KEGG:ns NR:ns ## COG: lin1818 COG1295 # Protein_GI_number: 16800885 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 9 275 10 276 289 176 35.0 6e-44 MKFLDNIKKNQSLMRFIETTQSHMVTAEIGNSSVVVAYYLLLSLFPLLIAVGNVLPYLRI DPNSVLPYIAEAIPKDVYKNLEPAIRSLLTQRSGGLLSVSALAAFWSASQSINALQNAMN KAFGVEQRKNFILVRVVSFLVILLFMVAIVGVVVILGLGQYIIELLQPIFHYSTSVIDTF QALKWPLTTVVLLVIMCLIYAVVPNRKLSLRSILPGAIFSTVGWMLLSQIFGLYVKYFSS RIASYQIIGSFIILMLWLNFAATIIILGAIVNAVVDEYLSGDKEKKQPSFEQRLFRWFKK KK >gi|307679251|gb|GL456996.1| GENE 129 119703 - 119804 69 33 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPEHMFQLVNASVYGIIYPEREESGFDYVTIYL >gi|307679251|gb|GL456996.1| GENE 130 119785 - 120921 909 378 aa, chain + ## HITS:1 COG:L35751 KEGG:ns NR:ns ## COG: L35751 COG0472 # Protein_GI_number: 15673776 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Lactococcus lactis # 4 365 10 397 443 379 53.0 1e-105 MSLFIYEVLIRLFMTFILSLLLTPLVKLLAFRIGAYDAPGERRINTKNMPTAGGLAIYIA FASSCLLIFRSIIPQDYIWPIILAGGMVVLTGLIDDIKEITPMKKTIGILLAALVIYFVA GIRIDFVTLPVVGMIDLRWFSLPLTLLWILAITNAVNLIDGLDGLASGVSIIGLTTIGIT GYFFLHAKTVYIPIVIFILVASIAGFFPYNFYPAKIFLGDTGALFLGFMIAVMSLQGLKN ATFITVITPMVILGVPITDTVYAIIRRLLNKKPISSADKMHLHHRLLSLGFTHKGAVMTI YALALVFSFVSLLFSYSSTVASILLIVFCLIGLELFIELIGLVGEGHQPLMYLLRILGNR EYRQEQMKKRLGKHSKRK >gi|307679251|gb|GL456996.1| GENE 131 121049 - 121831 840 260 aa, chain + ## HITS:1 COG:RSc0688 KEGG:ns NR:ns ## COG: RSc0688 COG1216 # Protein_GI_number: 17545407 # Func_class: R General function prediction only # Function: Predicted glycosyltransferases # Organism: Ralstonia solanacearum # 5 257 4 251 275 109 29.0 5e-24 MQEMVTISIVTYNSRYIFNVLDQLKAELGTDSIYDIHIYDNHSETAYLEKLTTYEPFITI HRAEENQGFGHGHNQVLFNASTKYAIIFNPDVLVTKDVLDRLLDRIKIDKNIAVVSPKVL NEDGTTQYLVRQKLDVFDYMLRFIPFQFVKKIFDKRLSIYECRDLSDTETTDIKMGSGCF MLIDREKFVEIGGFDERFFMYFEDNDLCLRFGKAGYRILYTPFETVVHMYEKGAHKSRKL FKIFMQSMGKFFNKWGWRFF >gi|307679251|gb|GL456996.1| GENE 132 121831 - 122658 773 275 aa, chain + ## HITS:1 COG:no KEGG:EF2196 NR:ns ## KEGG: EF2196 # Name: not_defined # Def: glycosyl transferase, group 2 family protein # Organism: E.faecalis # Pathway: not_defined # 1 275 1 275 275 531 98.0 1e-149 MSQRLAVVIVLYQMKMADTPNYLLLKEVVDHPQLHLFIYDNSPLPQEDALFLQPNVTYRH NPDNPGLATAYNEAIAFSQANQCELLLLLDQDTEVPASYFDTLIIMPLDPTVAVYVPIVE ANGQQISPVYSDQYVGLKGAKPTAGIANQPLMAINSGTVITAETLRWLEGFSEEFPLDYL DHWFFYQLNQANKKIEVLPIHLKQELSVLDYRTMSPQRYRSIIEAETLFYRRYDQEKFSH HRRHLFLRSSKQFLTVKNRQIWRQTLAEFLKLMKG >gi|307679251|gb|GL456996.1| GENE 133 122662 - 123375 706 237 aa, chain + ## HITS:1 COG:DRA0037 KEGG:ns NR:ns ## COG: DRA0037 COG0463 # Protein_GI_number: 15807707 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Deinococcus radiodurans # 4 206 10 222 328 116 31.0 5e-26 MISVCIATYNGEKYLAEQLDSILLQVSEEDELIISDDGSTDHTLEILRTYAANYPQIQLL QGPGQGVIANFAFALTHTKGEVIFLADQDDVWLPNKVTTVTEYFEAHPDIQVVISDLKIV DADLQVTNPSYFKFRKVKPGFWRNAIKSGYIGAGMAFRQEMKNVILPIPPEVPMHDMWIG LLAARKKQTGLIKEPLVLYRRHGANVSPIITKTSFQQKLNWRVNLLKALHQRLKEQR >gi|307679251|gb|GL456996.1| GENE 134 123498 - 124364 1067 288 aa, chain + ## HITS:1 COG:L197041 KEGG:ns NR:ns ## COG: L197041 COG1209 # Protein_GI_number: 15672176 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-glucose pyrophosphorylase # Organism: Lactococcus lactis # 1 285 1 285 289 461 79.0 1e-130 MKGIILAGGSGTRLYPLTKATSKQLMPIYDKPMIYYPMSTLMLAGINEILIISTPEDTPR FESLFGDGHDLGIHIEYAVQESPDGLAQAFIIGEEFIGDDSVCLVLGDNIYYGGGLSKML QRAASKESGATVFGYHVNDPERFGVVEFDEEMRALSIEEKPAQPKSNYAVTGLYFYDNEV VEIAKGIKPSERGELEITDVNKVYLEKNKLSVEVMGRGFAWLDTGTHESLLEASTFIETI EKRQNLKVACLEEIAYRMGYITKEQLVELAQPLKKNGYGQYLLRLAAE >gi|307679251|gb|GL456996.1| GENE 135 124377 - 124949 882 190 aa, chain + ## HITS:1 COG:CAC2331 KEGG:ns NR:ns ## COG: CAC2331 COG1898 # Protein_GI_number: 15895598 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes # Organism: Clostridium acetobutylicum # 6 178 9 180 185 186 55.0 3e-47 MKVIDTKLQDVKIIEMDVFGDHRGFFTESYSKAKFAEHGLDFDFVQDNHSLSTEAGVLRG LHFQKGEAAQTKLIRVVTGAVLDVIVDIRKGSPTYGQWEGYILSEHNHRQLLVPKGFAHG FVTLTPNVNFMYKCDNYYNAAADGGIAFNDPALAIDWPIAPEKAITSEKDQKHPTLKEFE AENPFIYGEI >gi|307679251|gb|GL456996.1| GENE 136 124974 - 126002 1186 342 aa, chain + ## HITS:1 COG:SPy0936 KEGG:ns NR:ns ## COG: SPy0936 COG1088 # Protein_GI_number: 15674955 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-D-glucose 4,6-dehydratase # Organism: Streptococcus pyogenes M1 GAS # 2 342 3 343 346 582 81.0 1e-166 MKKIIVTGGAGFIGSNFVHYVVKNHPEVHVTVLDKLTYAGNEKNLEGLPSDRVELVVGDI ADAELVNRLVAETDAVVHYAAESHNDNSLNDPFPFVQTNLIGTYTLIEACRKNNVRYHHV STDEVYGDLPLREDLPGHGEGEGEKFTAETPYNPSSPYSSTKAGSDLLVKAWVRSFNLQA TISNCSNNYGPYQHIEKFIPRQITNVLSGITPKLYGAGKNVRDWIHTNDHSSAVWAILTK GQIGETYLIGADGEEDNKTVMELILELMGQPVDAYEHVNDRAGHDLRYAIDSTRLREELG WEPEFTNFREGLAETIKWYTENEDWWRADKEAVEAKYAQNGQ >gi|307679251|gb|GL456996.1| GENE 137 126095 - 126937 1099 280 aa, chain + ## HITS:1 COG:L320 KEGG:ns NR:ns ## COG: L320 COG1091 # Protein_GI_number: 15672181 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-4-dehydrorhamnose reductase # Organism: Lactococcus lactis # 1 276 1 281 299 353 64.0 2e-97 MILITGGNGQLGTELRHLLDEQGIEYVSTDSTELDITDADSTLAKVKEIQPSVIYHCAAY TAVDKAEDEGKELDEKVNVDGTRHVAEAAKAVGATLVYVSTDYIFDGTKKEGVYAIDDQP NPLNEYGRTKLLGEQAVQEILDDYYIIRTSWVFGQYGHNFVFTMQKLAETRDQLTVVDDQ FGRPTWTRTLAEFMAFVIAEKAPFGVYHLSNENSCSWYQFAKEILKDTEVEVLPVDSTQF PQKAQRPQYSVMDLSKTEALGFKIPTWQEALAQMLENVQQ >gi|307679251|gb|GL456996.1| GENE 138 126996 - 127721 702 241 aa, chain + ## HITS:1 COG:L11285 KEGG:ns NR:ns ## COG: L11285 COG0463 # Protein_GI_number: 15672191 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Lactococcus lactis # 2 237 5 237 241 250 54.0 2e-66 MKVLLIIPAYNEEENILRTIASIETFKQEVTHFQHELDYVVINDGSTDGTKQILEVNQIN AIHLVLNLGIGGAVQTGYKYALENEYDVAVQFDGDGQHDINSLPILLEPLAEGKCDFSIG SRFIPGNEAAFQSTKMRRFGIRLLSFCIRMASGKTIYDVTSGYRAGNRKVIAFFAKRYPT NYPEPESIVHLIKKRFVIVERPVNMMERLGGVSSIRALASVKYMLEVGSAILIAAFMKEG D >gi|307679251|gb|GL456996.1| GENE 139 127721 - 128071 453 116 aa, chain + ## HITS:1 COG:no KEGG:EF2189 NR:ns ## KEGG: EF2189 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 116 1 116 121 166 95.0 4e-40 MLPTVLWLALFLFAIGFFLYIIRGINKNIFLLKNALIWLLISIVLIIFAIFPHVAEWLAM AFGFETTSNFLLSAAVIVLLIMEIKNSVLISKHENRIKTLLQELSIMKSEENKKDR >gi|307679251|gb|GL456996.1| GENE 140 128145 - 128486 345 113 aa, chain - ## HITS:1 COG:no KEGG:EF2184 NR:ns ## KEGG: EF2184 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 113 1 113 113 112 100.0 4e-24 MVLFIIYVFLSSAGLVLFKLGSSSLNIQLQQTIFSMNISLISLLGLFCYLISFILWMLII SRSDVSYIVPLGVACTNIAILIASNLILKETITTNALIGAVVIIVGIVIMNLK >gi|307679251|gb|GL456996.1| GENE 141 128734 - 129528 785 264 aa, chain + ## HITS:1 COG:BS_tagG KEGG:ns NR:ns ## COG: BS_tagG COG1682 # Protein_GI_number: 16080624 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate export systems, permease component # Organism: Bacillus subtilis # 18 264 17 275 275 143 33.0 3e-34 MFKETFSIFKNIFQNKKLLLQFSFNDFKAKYAGSALGIVWAFLTPLVTVLTYWFVFSVGL RSRAGDNMPFIVYLVTGMVPWFFFSDSLLSATNVFREYSYLVKKVVFNVQILPTSKILSN LYTHLFFILIGFVITTANGYYPSLYSLQLIYYLACLLVFLTAITWITASTQPFLPDIMQF INIIMQTVMWTLPILWQPTGMIATILKINPLYYIVQGYRESYLGGAWFWEHWQYSLYFWG VTIVLLLIGSTVFRRLKPHFSDVL >gi|307679251|gb|GL456996.1| GENE 142 129541 - 130758 1435 405 aa, chain + ## HITS:1 COG:PA1386 KEGG:ns NR:ns ## COG: PA1386 COG1134 # Protein_GI_number: 15596583 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate transport system, ATPase component # Organism: Pseudomonas aeruginosa # 11 238 13 240 422 242 49.0 1e-63 MSEYAIDIQHITKTYNMYKKPSDRFKEALSPTKKSYHDLFYALDDVTMQIKKGEMIGFVG ENGSGKSTMLKIITGVLTPTSGSMVINGKISALLELGSGFNPEYSGYENIFLNGMVLGFS REEMEERVQDVIDFADIGDHLYQPVKTYSSGMFVRLAFAVAINVDPDILIVDEALAVGDL EFQLKCMEKFTEIKNSGKTILFVSHDVNSIRRFCDRTFWLQHGKVVEYGDTMDVTTNYEN FLKKKSIKTVDREATMKDETPTPDIIEVDHAELLNADYEPLEMVTQDEKVIVKIEYTVKN DQIKKPVCGVAIRTVDNHYVCGLNTLLDGVQIPWKKGRNVFYLEYEKMSLLTGEYYFDIA FFEEHATVPLVYKTKYVTMFITGRYAGEGIVILDHKWKDTTKDEV >gi|307679251|gb|GL456996.1| GENE 143 130748 - 133891 3176 1047 aa, chain + ## HITS:1 COG:alr4487_2 KEGG:ns NR:ns ## COG: alr4487_2 COG0463 # Protein_GI_number: 17231979 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Nostoc sp. PCC 7120 # 554 791 1 239 519 183 38.0 2e-45 MKYDFEMETDESTSVGKIVAQIKENSDVLEFGPGNGRMTSYLMEEKKCQVSIVELDKELY DHVSQFSTDAFYGNIDENDWVEYFAGKTFDYIVFADVLEHLMNPQSALAKVKPFLKPGGQ ILITFPNLAHNSVLIDLFNNRLTWNETGLLDATHKSFYLQEGFEKVFAEVGLYIAKEDFT FNQVGYNEIPTTYEALPVEVQAAFKARPFGEVYQYFFALTAEPVEQPERVTPVNSYNEKN VHILINCGEEKETELDQPVDLQKPETKQFQLKIPEDVQLIKLFPSLTGAIVKLSMTIDGQ TVPVAATNAFLVQENVYYFLDTQVPVIEVTDAQMAGKDLTVDIDYFFEGNYSERENTFIH ALLDERNQFLEEMNKQTETAPMPTGKYKRITLTKFDKMINLTIDDIARDVENNVSVIRGW AYDKQTNYPLRFSIAEASESVTYTVETEYRRDVIDMFELEGDQDYGFVITIKDPEDLPAY TLNIDTKSGQKVQYVVERPNMVQPGTKFDRAWRSIQTRGLMGSVKWYFKRQEKAESPVDV EAVLAEIKTFQFQPKISVAVPVYNVEEKWLAACVSSLQNQYYENWELCLADDASPSEHIK PMLEKYKELDQRIKVIYREENGHISEATNSALSIATGDFVGFMDNDDELAPQALYEVVKA LNTDPTIDFLYTDEDKITENGRRFNAFYKSDWNPELILNHNYITHFVVVKRDLLEKVGGL NSAYNGAQDYDFVLRATEQATKIKHIPGMMYHWRAIESSTALNPESKGYAYVAGQKAVQA ATERRGLKAQVEIAEFYGSYKINYLYDHVPMVSLIITNDTENMSSYLRQLLEKTAYTNYE ILLPARFENQINIQNDRLRYVSTETRHGMIQAAKGEYVALLNAGLVPTKNDWLKELMNIG QQETSGLVTGRVVDARYRVETVGVSVDTDKGRLLYPEKGTPGKSLGYYYRIALPRNIQAA TEDCLLFNKQLYLNLEGINENLGKEWMGVDLSLQFASAGKRNVYVSYAILKADEKMQNHD KKGSYKELAEKWTAEALVDPYRNPKHL >gi|307679251|gb|GL456996.1| GENE 144 133903 - 136044 2255 713 aa, chain + ## HITS:1 COG:alr4487_2 KEGG:ns NR:ns ## COG: alr4487_2 COG0463 # Protein_GI_number: 17231979 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Nostoc sp. PCC 7120 # 180 573 1 392 519 211 33.0 5e-54 MNEDIKVIFDSIYRDKATNNLTITGWALDTITKESPTFTINNENQVSAYNIQRVLREDVN QIYQTEPAIEAGFVVTLEGIKQKKVLPFHFQSSAHVVTVDFPLNKKYPVIPGTEDKVTRL WIKAKKGFKYMAKNGISHTIQRAKIEKLRNQASYPNWLARNEVLDIEAMTQEIATFHYQP KISIAMPVYNVEEKWLRLCIDSILNQVYTNWELCMADDASTDPNVKKILTEYQQLDERIR VVFREQNGHISEATNSALAIATGEFVALLDNDDELAINAFYEVVKVLNENPELDLIYSDE DKIDMDGNRSDPAFKPDWSPDLLLGTNYISHLGVYRRSILEEIGGFRKGYEGSQDYDLVL RFTEKTTKERIKHIPKVLYYWRMLPTSTAVDQGSKGYAFEAGLRAVQDALVRRGINGRAT HGAANGLYDVYYDIKSDKLVSIIIPTKNGYKDVQRCVSSIIEKTTYQNYEIIMADNGSTD PKMHELYAEFEQQLPGRFFVESIDIPFNFSTINNRAAKKAHGEYLLFLNNDTEVITENWL TLMVSFAQQERIGCVGAKLLYPNNTVQHAGVILGLGGVAGHGHYGYPHGDLGYFGRLAIN VNYSAVTAACLLMKKADFDAVGGFEKAFTVAFNDVDLCLKVQALGRDNVWLHEAELYHFE SQTRGYDDKGKKKKRFEQEKVMMEEKWGPLIENDPFYNPNLTRDIPNFSLRID >gi|307679251|gb|GL456996.1| GENE 145 136078 - 138048 1863 656 aa, chain + ## HITS:1 COG:no KEGG:EF2179 NR:ns ## KEGG: EF2179 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 656 1 656 656 1251 100.0 0 MEQQLTTRKEKQPLRNQAEQSARLVDHLLRWRYLLAAVIFILLVAFKVHGSSLNMWDAYV SEYADGQKSSLIAGEPRGVRSDEWLVQTPFSLSQTQTGLKTHNDVITLNGQDMVVGYNSP AWNLATLAKPFTWGYVLLGKEYGLSWYWNLKLIGLILFSFEIGLIVTRRNKYLALLASVW IPFSSALQWWFVSPVGDLVFFGLGFLVGIYNYFYYHSSVRRRVICAITAVIMASGFVLVI YPALQVPLGYLILLFLILFFLEFRKKIKLDKWDGVLIGGALLMTAIIVGGSLYGSLDSLK AVMDTAYPGKRVSLGGDMPKRDILLFLTNWKMPFQDVPYSNNSEISSFYQLFFVILPLSP FIFYKKIKENIYGFVLFVYCLFNLVWMSVQFPTIFAKLTLWSYVPEQRAMLSFGFAAVLL SLWFIDYLWNRQAKIPMMAWLGALGLNVVLYFFVLYTGNLRLYVTRMDIIGVLVVATVLI VALFKRWRTLFVLVLLGIIMVSGAFVNPISRGVSAVYGKKLAVEVEEINKKDPNQLWVGE RLMYGYLPMLGVHTFNGVAFTPDLEAWKPLDPKGKDTFIYNRYAHINVEVGNQTPVLELM QKDAIIARLSPEKLKEYGIKYAVVYKPLEPLDTPTIHFEKLYGPDQNGAYIYRIND >gi|307679251|gb|GL456996.1| GENE 146 138077 - 139378 878 433 aa, chain + ## HITS:1 COG:no KEGG:EF2178 NR:ns ## KEGG: EF2178 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 433 1 433 433 810 99.0 0 MGKVLNRIGRLILLVTMIGSYTMWVVGIDAPVTKYMYANSSILLLIAVILVLLLNCTKLK FIDWLTVALALATWLLFHFTESIRHSTMQTDTMIPLIILLVLCFKVCVFDRMDQTLLLIV SLVALSATLYRMSVELPQLIPADEIFKESNKLESIWINTNTIGATLMFSTMMASSLIKAY RNKVFNLLLLPVYIGGVLGTWVSQSKTSFAILVGFILVDNLLPKRFLQRSKVWLFGFVGV AALGPLLFYLCAESDTVDLFTGRERIWHEFFAKWLSDPQHIKVGMEPFVASWKPLGTHNA FLFTLSNFGVIGYLILFGFLVSMILLIGFRKKTLDRLQVSLLLGFLLIWIHSFMEDILLA PHWMPIVYSFLGLAFYFRPEKKRGRHERPTTPKRRKRVKQTSPVSNEERPIAPVDEEGWD QPEELSRVQRHRR >gi|307679251|gb|GL456996.1| GENE 147 139484 - 140881 1230 465 aa, chain + ## HITS:1 COG:CAC2330 KEGG:ns NR:ns ## COG: CAC2330 COG2148 # Protein_GI_number: 15895597 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sugar transferases involved in lipopolysaccharide synthesis # Organism: Clostridium acetobutylicum # 1 450 1 449 461 278 36.0 1e-74 MTSKSEWSNARRIVIILADVLLYNLSIILGFIMKFGRAIPSFNFVAYEKSAIYISIFFIF LNLLLGAYIFYNRKISDIIFVTVIGQILMTLTIMIVTFAGRWFTFPRSVLGYSFIIGIIV LSFWRILVYYLYLKVSNERKVVLLGKENQVMRSIQNFMSDKNNKHKVTSVVVSNYYENLK KIIDEIDIVYISSNVDENEKVKLYQLIVKHKKKIFLDTSFENLIMLKPNMMNFEDESIIE VSNFEIQPEENFIKRLFDILVSVCLFVITSPLMLIAAILVKATSPGPVIYKQTRITLDQR EFSILKFRTMSATAEAKSGPVLSTSNDSRVTTVGKYLRALRIDELPQLINVIRGDMSIVG PRPERPFFVDQFNQENPNYYLRHNVRAGITGYAQVYGKYASDYNSKLNFDLLYIKNYSLL LDMKILLQTIKILFDKVSSRGLDESEEREELTMDYCKENAIRIYR >gi|307679251|gb|GL456996.1| GENE 148 141002 - 141835 879 277 aa, chain + ## HITS:1 COG:HI1695 KEGG:ns NR:ns ## COG: HI1695 COG0463 # Protein_GI_number: 16273582 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Haemophilus influenzae # 7 274 4 267 267 206 40.0 5e-53 MEKVPVSVLLSIYIKERPEYVIACLDSIFNQTVKVDEIVLVEDGPVTEEMTVIVDKYKET YPEVLHVLPLEKNVGLGKALAEGVKVCRNELIARMDADDIMKTDRIEKQWQLFQKNPNLV IAGSNIIEFEGNIENVLGYRNLPSSNEDIREFSKRRNPFNHMTVMYKKSDILEVGNYLPM SGFEDYYLWVRLLKKGKEAQNLSEHLVYARTGSDMYARRGGWQYFKSGLKGRKAIYQAGL GSFKDFFVSSSAHVVVSLMPNNLRGKFYEKFLRKDND >gi|307679251|gb|GL456996.1| GENE 149 141851 - 142693 580 280 aa, chain + ## HITS:1 COG:SP1367 KEGG:ns NR:ns ## COG: SP1367 COG3475 # Protein_GI_number: 15901221 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: LPS biosynthesis protein # Organism: Streptococcus pneumoniae TIGR4 # 7 279 5 275 281 340 59.0 2e-93 MQEMTQTDLKEIQAVTLTMSKYFVQFCQENNLLCYFCGGGCIGAVRSQGFIPWDDDLDFF MPRPDYEKLKKLWPQKADINRYPLLVASKTYNDHNSFITIRDTATTFIKPYQEDLDIPHG LPIDIFPLDGAPEGKLRRKIQKFWALIYALFCSQVVPEKHGGLMATGSKVLLGIFSSSKI RYHIWRFAEKRMTKYSFGSTPYVTELCVGPRYMGNIYHLEDFKSAIFVPFEDTKMPIPVG YNRYLTQVFGDYMQLPPEEDRQPHHEALIVDTKKSYTEYI Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:14:46 2011 Seq name: gi|307679250|gb|GL456997.1| Enterococcus faecalis TX2141 genomic scaffold Scfld11, whole genome shotgun sequence Length of sequence - 1272 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 892 556 ## MCCL_plsD0001 plasmid replication initiation protein 2 1 Op 2 . + CDS 910 - 1128 299 ## gi|315146002|gb|EFT90018.1| conserved domain protein Predicted protein(s) >gi|307679250|gb|GL456997.1| GENE 1 2 - 892 556 296 aa, chain + ## HITS:1 COG:no KEGG:MCCL_plsD0001 NR:ns ## KEGG: MCCL_plsD0001 # Name: not_defined # Def: plasmid replication initiation protein # Organism: M.caseolyticus # Pathway: not_defined # 82 287 97 296 333 111 37.0 4e-23 LTLDVKFDWSIDRITIVGKLKENLYYHTELDVLILNFEQLMRLNENNGYLKNVGANSWQL IDVHGENIAYIEMLKYQNGYGRIDFNPNKINKFLASSMKNFIHDLFLEPHFSRADIACDM IDVPDDFITQYRVVDPISFKPIYGRSGKLETAYWGSRSSERQVRMYNKKLEQEQKRKIVP SEIKSWWRFELQLRRGKANNWHDMVHESLNSFASPHFLPPEIKPTERIMIKGLLYDHSEW GNLAKNTKKKYRDILKEESLNDELTKHLRETFKESSSELKKELDTWLQGLDVSEDN >gi|307679250|gb|GL456997.1| GENE 2 910 - 1128 299 72 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315146002|gb|EFT90018.1| ## NR: gi|315146002|gb|EFT90018.1| conserved domain protein [Enterococcus faecalis TX2141] # 1 72 1 72 72 127 100.0 4e-28 MKSIDELFKGYYDSNNLEKNSQYSDCSKEQLVIEAEYMNACLHRILKYINDGGTDINRIY AEVMDGIYESRI Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:15:09 2011 Seq name: gi|307679249|gb|GL456998.1| Enterococcus faecalis TX2141 genomic scaffold Scfld12, whole genome shotgun sequence Length of sequence - 42496 bp Number of predicted genes - 50, with homology - 47 Number of transcription units - 18, operones - 10 average op.length - 4.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 378 - 2291 2174 ## COG1193 Mismatch repair ATPase (MutS family) + Prom 2320 - 2379 4.0 2 2 Tu 1 . + CDS 2409 - 3824 1646 ## COG1785 Alkaline phosphatase + Term 3834 - 3879 9.1 + Prom 3852 - 3911 8.8 3 3 Tu 1 . + CDS 3936 - 4907 1089 ## COG1834 N-Dimethylarginine dimethylaminohydrolase + Term 4942 - 4981 -0.7 + Prom 5044 - 5103 9.0 4 4 Op 1 . + CDS 5333 - 6022 1045 ## EF2970 hypothetical protein + Term 6058 - 6095 3.1 5 4 Op 2 . + CDS 6110 - 7243 1364 ## EF2969 hypothetical protein 6 4 Op 3 . + CDS 7227 - 7625 269 ## EF2968 cell wall surface anchor family protein 7 4 Op 4 . + CDS 7671 - 7895 244 ## EF2967 hypothetical protein + Term 7903 - 7946 8.1 + Prom 7901 - 7960 8.3 8 5 Op 1 2/0.000 + CDS 8061 - 10070 1666 ## COG3711 Transcriptional antiterminator 9 5 Op 2 11/0.000 + CDS 10072 - 10371 181 ## PROTEIN SUPPORTED gi|148984431|ref|ZP_01817719.1| PTS system, IIB component, putative 10 5 Op 3 . + CDS 10386 - 11753 1625 ## COG3037 Uncharacterized protein conserved in bacteria + Term 11765 - 11832 24.0 - Term 11758 - 11813 16.5 11 6 Tu 1 . - CDS 11816 - 12790 685 ## COG0657 Esterase/lipase - Prom 13023 - 13082 6.0 + Prom 12893 - 12952 4.2 12 7 Op 1 13/0.000 + CDS 13002 - 13997 890 ## COG1609 Transcriptional regulators + Prom 14011 - 14070 6.7 13 7 Op 2 6/0.000 + CDS 14095 - 15006 1203 ## COG0524 Sugar kinases, ribokinase family 14 7 Op 3 1/0.286 + CDS 15022 - 15417 486 ## COG1869 ABC-type ribose transport system, auxiliary component 15 7 Op 4 . + CDS 15438 - 16325 936 ## COG4975 Putative glucose uptake permease + Term 16330 - 16376 6.6 16 8 Tu 1 . - CDS 16345 - 17229 1008 ## COG0583 Transcriptional regulator - Prom 17263 - 17322 6.7 + Prom 17222 - 17281 5.8 17 9 Op 1 1/0.286 + CDS 17337 - 17918 641 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 18 9 Op 2 . + CDS 17918 - 18655 916 ## COG4221 Short-chain alcohol dehydrogenase of unknown specificity 19 9 Op 3 . + CDS 18695 - 18763 78 ## + Term 18786 - 18828 5.9 20 9 Op 4 . + CDS 18836 - 20149 1655 ## COG2252 Permeases + Term 20171 - 20221 11.2 + Prom 20204 - 20263 5.8 21 10 Tu 1 . + CDS 20308 - 21522 1599 ## COG0301 Thiamine biosynthesis ATP pyrophosphatase + Term 21527 - 21576 11.5 + Prom 21565 - 21624 4.5 22 11 Op 1 . + CDS 21652 - 22299 580 ## COG2344 AT-rich DNA-binding protein 23 11 Op 2 . + CDS 22363 - 22851 704 ## COG2077 Peroxiredoxin + Term 23033 - 23081 -0.6 + Prom 23146 - 23205 6.9 24 12 Tu 1 . + CDS 23243 - 25885 3066 ## COG0525 Valyl-tRNA synthetase + Term 25890 - 25942 16.2 - Term 25883 - 25925 11.4 25 13 Op 1 . - CDS 25932 - 26531 522 ## COG0398 Uncharacterized conserved protein 26 13 Op 2 . - CDS 26524 - 29088 2135 ## COG4485 Predicted membrane protein - Prom 29224 - 29283 6.1 27 14 Op 1 . + CDS 29337 - 30659 1654 ## COG0285 Folylpolyglutamate synthase 28 14 Op 2 . + CDS 30646 - 31302 728 ## COG0637 Predicted phosphatase/phosphohexomutase 29 14 Op 3 . + CDS 31358 - 31909 508 ## COG2003 DNA repair proteins + Term 32094 - 32140 0.6 30 15 Tu 1 . - CDS 31931 - 33298 988 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs - Prom 33329 - 33388 4.3 31 16 Op 1 . - CDS 33408 - 33839 379 ## gi|307290162|ref|ZP_07570081.1| conserved domain protein - Prom 33859 - 33918 4.6 32 16 Op 2 . - CDS 33927 - 34271 387 ## EF2853 hypothetical protein 33 16 Op 3 . - CDS 34289 - 34621 291 ## COG1396 Predicted transcriptional regulators - Prom 34839 - 34898 9.1 + Prom 34855 - 34914 5.5 34 17 Op 1 . + CDS 34942 - 35118 316 ## EF2849 hypothetical protein 35 17 Op 2 . + CDS 35129 - 35272 250 ## gi|307290166|ref|ZP_07570085.1| hypothetical protein HMPREF9509_00472 36 17 Op 3 . + CDS 35244 - 35465 61 ## gi|307290167|ref|ZP_07570086.1| hypothetical protein HMPREF9509_00473 37 17 Op 4 . + CDS 35466 - 35882 339 ## gi|256962789|ref|ZP_05566960.1| predicted protein 38 17 Op 5 . + CDS 35887 - 35976 76 ## 39 17 Op 6 . + CDS 35969 - 36268 312 ## EF2844 hypothetical protein 40 17 Op 7 . + CDS 36265 - 36489 274 ## EF2843 hypothetical protein 41 17 Op 8 . + CDS 36492 - 36599 201 ## 42 17 Op 9 . + CDS 36592 - 37563 1027 ## COG3723 Recombinational DNA repair protein (RecE pathway) 43 17 Op 10 . + CDS 37526 - 38341 578 ## EF2840 hypothetical protein 44 17 Op 11 3/0.000 + CDS 38357 - 39145 434 ## COG3935 Putative primosome component and related proteins 45 17 Op 12 . + CDS 39157 - 39996 624 ## COG1484 DNA replication protein + Term 40005 - 40043 -0.7 + Prom 40056 - 40115 3.5 46 18 Op 1 . + CDS 40136 - 40303 159 ## gi|257078081|ref|ZP_05572442.1| predicted protein 47 18 Op 2 . + CDS 40282 - 40746 290 ## EF2836 hypothetical protein 48 18 Op 3 . + CDS 40758 - 41363 653 ## EF2835 hypothetical protein 49 18 Op 4 . + CDS 41388 - 41585 222 ## EF2834 hypothetical protein 50 18 Op 5 . + CDS 41639 - 42382 462 ## LLKF_1053 phage protein Predicted protein(s) >gi|307679249|gb|GL456998.1| GENE 1 378 - 2291 2174 637 aa, chain + ## HITS:1 COG:CAP0099 KEGG:ns NR:ns ## COG: CAP0099 COG1193 # Protein_GI_number: 15004802 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Clostridium acetobutylicum # 1 626 1 625 629 514 43.0 1e-145 MNHETIQKLQFTTILKEVQTRAIGEYSKERLAKMVLATRLETVQSRLTETTEARLIIDSG QHVPFMGLSQITRLLQQVKKGLILTPNELIEVADFLRSSQRIQKFFEKNQYQTPRLFSYS QHLADFRAIEEQIYTKIHNQKVATDASRQLRKMRRQINECQQEIETKVTKFLRNKNNQLY IQENMMVKKGEHYTVPIKASYKNKVSGTIIEQSNKGQTVFIEPVAISKLNEQLTLLKAEE TAEEYQILAELTGLINEQERLVDQAVDTMTTLDIIFARGKYSREIGGITPKVNKEERLRI VQGKHPLLLEHAVPLTFSLGAEYRGLVITGANAGGKTVVLKTVGLLTVMTQFGLQIPAQA GTEIPVLDEIFVDIGDQQNLENALSTFSGHMKNIAEMLRNVKRHTLVLLDEIGSGTEPNE GAGLAIAIMETMYQKGALVVATTHYGEIKRFAQEHDDFVSAAMAFDRETLTPKYQLKIGE VGDSQALWIARKMKMEPQLIEKAAHYIQRKEYPTNRSLFKPLKAKETTFATFVEETHRYQ KGDRVLLTETQQIGLVFTDEGEQEIQVFVNDKIENVPRRRLKLQAKAQDLYPQDYDLESL FTDFHERKKLKDIERGSKKAQKQLRKEAEKRAARRDK >gi|307679249|gb|GL456998.1| GENE 2 2409 - 3824 1646 471 aa, chain + ## HITS:1 COG:BS_phoB KEGG:ns NR:ns ## COG: BS_phoB COG1785 # Protein_GI_number: 16077641 # Func_class: P Inorganic ion transport and metabolism # Function: Alkaline phosphatase # Organism: Bacillus subtilis # 35 452 27 450 462 471 64.0 1e-132 MKKRALLGVTLLTFTTLAGCTNLSEQKSGEKQTEVAEAKATESEKASVKNVIFMIGDGMG NPYTTGYRYFKANHSDKRVPQTAFDTYLVGQQATYPEDEEENVTDSASAATAMAAGVKTY NNAIALDNDKSKTETVLERAKKVGKSTGLVATSEITHATPAAYGAHNVSRKNMAEIADDY FDDQIDGQHKVDVLLGGGSELFARKDRDLVKEFSQAGYGHVTDKKSLNENQDDKILGLFA PGGLPKMIDRTEEVPSLADMTEAALQRLDKNEKGFFLMVEGSQIDWAGHSNDIVGAMSEM QDFEAAFEKAIDFAKKDGETLVVTTADHSTGGLSLGKGDQYNWLTEPLHAAKRTPDFMAE EIIKNGNVEKTVTEYIDFQLSEAELKAVKTASESKDVEKIAQALRKIFDERSNTGWTTGG HTGEDVNVYAYGPQAEAFSGQIDNTDQAKIIFGLVDGTGQKAEIKDKGIGK >gi|307679249|gb|GL456998.1| GENE 3 3936 - 4907 1089 323 aa, chain + ## HITS:1 COG:MA3652 KEGG:ns NR:ns ## COG: MA3652 COG1834 # Protein_GI_number: 20092452 # Func_class: E Amino acid transport and metabolism # Function: N-Dimethylarginine dimethylaminohydrolase # Organism: Methanosarcina acetivorans str.C2A # 2 323 4 332 334 155 30.0 1e-37 MKKMHVESEFAPLRSVVLAQSQFCLPDKFDEADTTFLTEENARLTQNNEGRDLADFAPEQ QVRWEKEKEVMQGVLESYGVEVFRPRLLTTYEKEHGKELGVGYSNFFSRDPFFTIGNLLI EGNLRFQHRRQEILPIRPIIQQWTQEAEGYYFAAPQPDISEGALSEAGPFIEGGDVLVLG KTIFVGYSGLASNLAGIQWLANMIGHFGYEVVPVRLHPHILHLDCALSLLREGLMIVCEE AFLDGLPAQLANWEKIHVTLQEAAYLVTNGLPLNEETYITDQSFTTLIPQIEAKGIKVEA IDYHVSRMLGGSFRCTTQALIRE >gi|307679249|gb|GL456998.1| GENE 4 5333 - 6022 1045 229 aa, chain + ## HITS:1 COG:no KEGG:EF2970 NR:ns ## KEGG: EF2970 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 229 1 229 229 290 99.0 4e-77 MKKKTLVTLFAGTAILGASIAPAAAHATTTGTTPANVEMTSGSLPGGTGDGDDGSTQEPE PGSNTNFDLLYVPTEFKFTSTEVSSDLSAISLDATGTQTKRYAVGDVRGTQAGWSVTAGV AEMKNGTATLEGSITFAQTGAVAKYDETAKTYSRDVAAFAADPGSPEFAGTTIPVGGAAV SIATAAVGKGQGTWDSELSNVKLNITTPSSQITNGAYTGNVTWTLVAAP >gi|307679249|gb|GL456998.1| GENE 5 6110 - 7243 1364 377 aa, chain + ## HITS:1 COG:no KEGG:EF2969 NR:ns ## KEGG: EF2969 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 377 1 377 377 699 99.0 0 MKTMRWLIVTVFICVMALSIPSAVQAEEADDNMNTKFTVKPNIPENQAKNTQSYYDLIVK PGQKQEVELSLINKTDEELTIDLNLANAVTNDNGLIVYNDFEKKPDSSLKVPLTTLIKLP EEHVKVPAKKTVTAKMTVEIPANGFQGLVLGGVYASLAEDEKEEKGKSTGLTSRYGFNVA IALRMSEDTPMYLAETLQLVKLVPTIALGNKSVQAVIQNPTSAIFPEVRLEGKVTKKGET KEYAKRILPSVRFAPNSTMNFHLDFGKEDVRPGTYIFEGKAVLKEDEQQVWPFKQEFTIS SQEAKKLNKEAVVKLVLPTWWNQAFYGFLAATIVSLILAIWRFTQQKATLKQQAYLQQEK QAALKNRQGARYDDNEK >gi|307679249|gb|GL456998.1| GENE 6 7227 - 7625 269 132 aa, chain + ## HITS:1 COG:no KEGG:EF2968 NR:ns ## KEGG: EF2968 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 11 132 1 122 122 209 99.0 3e-53 MTMKSKGSLLVTLGILLTVGIASLIVSSESFAEEVGQTNIGVTFYGGKEPLKTEGVIKPI EQPVTDKDKKTSQQQDKVSRKTTAKTNPTNAQTSLPRTGERNSTWLYSLGIACLLVVLTS FYYLNKKRKKEK >gi|307679249|gb|GL456998.1| GENE 7 7671 - 7895 244 74 aa, chain + ## HITS:1 COG:no KEGG:EF2967 NR:ns ## KEGG: EF2967 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 74 1 74 74 90 100.0 2e-17 MEITMWIWICAGLAVLCFALFLLFLVNSMNFVHLAKPKQSLVKQSMFSWLLLVMCGGWVA VAILLNIALQTQLT >gi|307679249|gb|GL456998.1| GENE 8 8061 - 10070 1666 669 aa, chain + ## HITS:1 COG:SPy1952_1 KEGG:ns NR:ns ## COG: SPy1952_1 COG3711 # Protein_GI_number: 15675752 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Streptococcus pyogenes M1 GAS # 8 491 12 500 532 185 26.0 2e-46 MNYKISYLLDEYAGQKIALSLAQQITDLSQRELVTQLSTIGGEVQQNTVSIPNLSANEWG KQLFQQRQVIYSETERQALIFLLTYSEIEELSVYHYQNFLDVSKGTILADIKKVRHQLAT ENIALSYERKRGFYLEGDEFRIRRFGKNWLACLLQQKSGTFALFCWLSQHQMSQYAKMRD GIQLAVQEAQLQLVPSRLDEISYFLAFSQKRLGKYGTVVWPENQLIQSLRAYPVSRRILS DLVGPVANIETESLFFTICLMTALQGELRDTKLEFLLDISGEIIRKMELLAVVQFEQPRE LLMNVYYHLVPAYFRINYGFYLPNVLIKDIRQSYRSLYHLCEQALAPLEKLTKRSIPSEE IGFFTILFGGEIFGQKNEQRQEKLKALIVCPSGISSSLILQSELRRLFPMIEFKETNAVR EIENVSEKSYDIIFSTVPIETAKKVYLTKPIMSSLEKNQLMHQVQSDWLLPGISMPDVKD ILDALKPYISLKKGVTEAQLYRVLHRKMNKILEKEEDLRPMLSELLTTETVQVLPEVADW RAGITEAAKPLLKNGSITEKYIDAMIQKVESFGPFIHICPDVALPHARPEDGVNQLGMSL LKIQKSVDLLEDPKHEIHLFICLAASDNETHLRALSSLTKILSKKESLHRLVAAETVPEI LSIIQEGEK >gi|307679249|gb|GL456998.1| GENE 9 10072 - 10371 181 99 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148984431|ref|ZP_01817719.1| PTS system, IIB component, putative [Streptococcus pneumoniae SP3-BS71] # 1 96 2 93 94 74 39 1e-12 MKIFTVCQSGLGTSFMVQMNIQQILEEVGVDTDNFQIDHTDVGSASGDMADYFFVEKTLQ DALGSIPAEKIIPLNAIIDYDETKEKVLKVLDDNGIAHQ >gi|307679249|gb|GL456998.1| GENE 10 10386 - 11753 1625 455 aa, chain + ## HITS:1 COG:SP2129 KEGG:ns NR:ns ## COG: SP2129 COG3037 # Protein_GI_number: 15901943 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 4 454 1 448 448 418 55.0 1e-116 METLLNLFVSIVSQPAILVSLIALLGLVLQKKKFSDVVQGTLKTFVGFLVLIGGAGLLAN SLTPFAEMFQTALNTQGVVPSNEAVVAIALQQYGTPTALIMLVGMVVNILLARFTRFKYI FLTGQAMMYVSCLTAVILVGAGFSVSLPMILLGGLFEGTLLTVTPALCQPFMKQITGNDK VAMGHTGNIGYAASGFIGKVFGNKEKSTEDIKIPKSFGFLRDSTISIMILMSIVYVILAL LAGTGYVEHELSNGENAIIFSLIQAGTFTAGFVVGLQGVRMVLGEIVPAFQGIAKKLVPN SKPALDVPIIFPYAPNAVLIGFFVSFIVGTISMLAMVGLNTTVIIPGVVGHFFCGAAAGV FGNSTGGRRGAILGAAFNGLLISWLPLFILPVLGDLQLASSTFADTDYLIPGLFLGKLGE AGPSLLVGGIIAFVVFVLLASAVLTMREKKVAEEN >gi|307679249|gb|GL456998.1| GENE 11 11816 - 12790 685 324 aa, chain - ## HITS:1 COG:mlr1247 KEGG:ns NR:ns ## COG: mlr1247 COG0657 # Protein_GI_number: 13471310 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Mesorhizobium loti # 66 322 43 295 317 85 26.0 1e-16 MKKKSIGLLLASAYLFHARSRQKSLKACLFEDSLRLSQIARLERNPKVTKAFYHWQRSLN EQVTLPKHLRHLFPLQEMTQFPTMYRMANSVIAPTKKAVLYLHGGGFTLNLAYSQLDFSY KLIEDLSFATDYFIPVYPLAPNKSFADIYNHCYAAYQEILQHYDPEDVILLGDSAGGTLV LNVLQNLAIDFPERLPKAAVLISPWLDGHLDIPVAKSYQKKDKMIGMNYLQLIAQEIDDT ANHSTLSLNCLSFDYQKFPPLFFVGGTHEVFCPSYHQFLKQLGPRPQDTCRLVPGMQHVF AMKQYLPEGQQARKQIAQFIQEQW >gi|307679249|gb|GL456998.1| GENE 12 13002 - 13997 890 331 aa, chain + ## HITS:1 COG:SA0261 KEGG:ns NR:ns ## COG: SA0261 COG1609 # Protein_GI_number: 15925974 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 4 328 2 327 332 266 43.0 5e-71 MTNKKVTIKDVANDSGVSITTVSQILNGNGARFSGKTVEKVLAAKERLNYQPDYFAQRMV MKKSKTIGVIVPDITNPFFAQLIRGIESVLYKENFILMLCNAEQDVTREHEYLTELIRRS VDGFVIASSEISNQTINETLRAKKIPFIVLDQKKAEGFSDAVLTDDYRGGQLAAKHLQEQ RHEQVIVVMPPHAPVNIQQRLKGFCSVYTEKVQLIETELSKTGGYQAVPEILKTESTGIF AINDEIAFGLYRGLAEAGKKIPEDYSIIGYDNVDMCEYVSPPLTTIAQPVFQLGQTTATL LLERIHQPAKDWEEQTLPVQLIERFSTAPLK >gi|307679249|gb|GL456998.1| GENE 13 14095 - 15006 1203 303 aa, chain + ## HITS:1 COG:SA0258 KEGG:ns NR:ns ## COG: SA0258 COG0524 # Protein_GI_number: 15925971 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Staphylococcus aureus N315 # 2 300 3 301 304 246 48.0 4e-65 MNAVTIIGSINLDTTLRVKEMPKPGETIHAIEHFTAGGGKGANQAVAAKRSGAETYFIGA VGNDGAGAMMTDLMSQDEINLTGVTTLEKTATGQAFIMVDNAGENSIMIYAGANNAFTPK QVQEHQEIIEKSDFVIAQFESAIDSTIAAFKIAKKAGVKTILNPAPALEQVPEELLNVTD MIVPNETETEILTGIKITDEASMRKAAEALHQLGIEAVIITVGSKGAFYDVNGRSGIVPA FKVKAVDTTAAGDTFIGALSSILEKDFSNLEEAIRYGNKASSLTVQRFGAQPSIPYQHEL ADK >gi|307679249|gb|GL456998.1| GENE 14 15022 - 15417 486 131 aa, chain + ## HITS:1 COG:SA0259 KEGG:ns NR:ns ## COG: SA0259 COG1869 # Protein_GI_number: 15925972 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type ribose transport system, auxiliary component # Organism: Staphylococcus aureus N315 # 1 131 1 134 134 121 55.0 4e-28 MKKTKVINSDISRVIAQMGHFDKLSIGDAGMPVPRTTEKIDLAVTNGVPSFMEVLNNVLE ELAVQRIYLAEEIKTENPDMLAAIKTRLPETPISFIPHTEMKQELNNCHAFIRTGEMTPY ANILLESNVVF >gi|307679249|gb|GL456998.1| GENE 15 15438 - 16325 936 295 aa, chain + ## HITS:1 COG:SA0260 KEGG:ns NR:ns ## COG: SA0260 COG4975 # Protein_GI_number: 15925973 # Func_class: G Carbohydrate transport and metabolism # Function: Putative glucose uptake permease # Organism: Staphylococcus aureus N315 # 1 295 1 292 293 328 67.0 8e-90 MNATALLIGLGPLLGWGLFPTIASKIGGRPVNQILGTSLGTLIFAAIFSMINGLVFPAGM DLFFSILSGVGWACAQIITFKCFTMIGSSRAMPVTTAFQLLGASLWGVFFLGNWPGATAK LLGAFALVLIMIGAKMTVWSETESAESAGIMKKAVLLLAVGEIGYWAYSAAPQATAIDGM HAFLPQAIGMVIVAVIYSAVVTIKGGETSPFIEAVSYKQIFSGFFFAFAALTYLISAQPD MNGLATGFILSQTSVVLATLTGIWFLGQKKTAKEMTVTIIGLVLILAAATITVMI >gi|307679249|gb|GL456998.1| GENE 16 16345 - 17229 1008 294 aa, chain - ## HITS:1 COG:lin0450 KEGG:ns NR:ns ## COG: lin0450 COG0583 # Protein_GI_number: 16799526 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 1 292 1 291 291 310 53.0 2e-84 MELRVIHYFLAVVQEKTISGAAKQLHVSQPTLSKQLKELEEELGVTLFIRGNRQIQLTPE GEYLAKQGQDILSLANKTVTNLSQNEFINGEITIGGGETKAMSFLANALQQITSQHSADI HLHLYSGNADDVIERLDKGLLDFGLIIEPAPKQKYSYLTLPVVDTWGLITVKDHPLATKN VITAADLKEEPLFISRQAQVPSQLSDWLEASLDQFRIVGTYNLLYNASLMVEAGLGSALS IDGILETKQTNLRFIPLYPALTAKISLIWCKNTVLSTAAALFLEQIKKSIQRPE >gi|307679249|gb|GL456998.1| GENE 17 17337 - 17918 641 193 aa, chain + ## HITS:1 COG:lin0451 KEGG:ns NR:ns ## COG: lin0451 COG0110 # Protein_GI_number: 16799527 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Listeria innocua # 1 189 1 189 189 195 54.0 4e-50 MLTKNLQELIATGSIDKDEPLFQLIHQIQEENSRYLIELNQQAYTHNEVRNLLATIIQDK IDETVTILLPFYTDFGRNIHFGKNIFINRAAMFVDLGGIIIEDNVLIGPRVNLLSVNHPE LPMKRRGVLLAPITIKKFAWLGAGVTVLPGITIGENAIVAANATVTKDVPANAIVAGTPA KIIRWIQEDKEEI >gi|307679249|gb|GL456998.1| GENE 18 17918 - 18655 916 245 aa, chain + ## HITS:1 COG:lin0452 KEGG:ns NR:ns ## COG: lin0452 COG4221 # Protein_GI_number: 16799528 # Func_class: R General function prediction only # Function: Short-chain alcohol dehydrogenase of unknown specificity # Organism: Listeria innocua # 3 243 2 246 248 209 48.0 5e-54 MKSLSEKVIVIMGASSGIGEATARLLARKGAKLVIAARRQERLIAIKKELPEATILVQQA DVTKEEEVQRVIKLTMEKYGRIDVLFNNAGVMPTAPLIEAPKGEWRQMLDINIMGVLNGI AAVLPIMVEQKSGQIIATDSVAGHVVYPDSAVYCGTKFAVRAIMEGLRQEQRENNIKSTI ISPGAVQTELYQTISNRVVAETLHLEQLSWGLKAEDIAQAVVFAIDTPDRMSISEMVVRP TTQTI >gi|307679249|gb|GL456998.1| GENE 19 18695 - 18763 78 22 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIVRFLQNLEFDIYLFVGLLYD >gi|307679249|gb|GL456998.1| GENE 20 18836 - 20149 1655 437 aa, chain + ## HITS:1 COG:BH0608 KEGG:ns NR:ns ## COG: BH0608 COG2252 # Protein_GI_number: 15613171 # Func_class: R General function prediction only # Function: Permeases # Organism: Bacillus halodurans # 5 435 1 433 434 414 58.0 1e-115 MKEKISSYFELEQLNTNMKREMLAGFTTFISMAYILFVNPTVLGASGMDEGAVFTATALA SALGCILMGVLAKYPIATAPALGINAFFAYSVSVGMGIPWQTTLAGVFVASLIFIFITIF KLRELIIDAIPADLKFAISGGIGLFIAFLGLSQGGLIVANDATLVGLGPLNVGSTWVTIV GLVVTAILLVRRVPGGIFIGMAISTIVGLATGVIPMPDKIISSAPSLEPTFLVALGHVKD INTIQMWVVVLTFLLVTFFDTAGTLVGLANQAGFMKDNKMPRVGKALAADSTAMLAGSLL GTSPVGAYVESSAGIAVGGRSGITAITTGILFIFSLLFSPLLAVVTSQVTAPALIIVGVL MAQSLSKIKWNEMEIAIPSFLILLGMPLTYSISDGIALGFIFYPITMIAAKRGKEVSPIM YGLFFVFVGFMWILNAQ >gi|307679249|gb|GL456998.1| GENE 21 20308 - 21522 1599 404 aa, chain + ## HITS:1 COG:SP0881 KEGG:ns NR:ns ## COG: SP0881 COG0301 # Protein_GI_number: 15900764 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis ATP pyrophosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 404 1 404 404 538 66.0 1e-153 MKYTEIMVRYGELSTKGKNRKTFIMQLAQNVKRALADFPALKIHADRDRMHILLNGEDSE GVIPKLSKVFGIQNFSPSIRIEKEMPAIRAMVQEVVREVYTPGKTFKITAKRSDHSFELD SNGLNQELGGAVIEAIPEIQVQMKKPDINLRIEIRKDAAYLSYETIRGAGGLPVGTSGRG MLMLSGGIDSPVAGYLAMKRGVEVEAVHFASPPYTSEQALQKAKDLAEKLVPYVGTIQFI EVPFTEIQEEIKRVVPQGYLMTITRRLMLRLTDAIREMRKGLVIINGESLGQVASQTLQS MVAINEVTSTPIIRPVVSMDKTEIIEIAEKIDTFELAIQPFEDCCTIFAPPQPKTRPRLD KAQDYEARLDLEGLMARALEGLKITEISAETAKDKQEDEFADFL >gi|307679249|gb|GL456998.1| GENE 22 21652 - 22299 580 215 aa, chain + ## HITS:1 COG:lin2178 KEGG:ns NR:ns ## COG: lin2178 COG2344 # Protein_GI_number: 16801243 # Func_class: R General function prediction only # Function: AT-rich DNA-binding protein # Organism: Listeria innocua # 4 207 7 210 215 218 52.0 5e-57 MEKKMPKATAKRLPVYLRYLKMLGDSGVKRIKSREFSEMIQIPSATIRRDFSHVGELGRS GYGYDVPYLIEVFSNILNTQEEKRIALIGCGNLGKALLKNNFRRNENLNIVCAFDNDLAL VGTTINGLLVHDMSELEAFVRQEGVTVAISTVPSHHAQKAIDKIVQAGVTAILNFAPDRV SVPANVSVQYIDLTTELQTLIYFNETFSLANSPKQ >gi|307679249|gb|GL456998.1| GENE 23 22363 - 22851 704 162 aa, chain + ## HITS:1 COG:L101699 KEGG:ns NR:ns ## COG: L101699 COG2077 # Protein_GI_number: 15672286 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Lactococcus lactis # 1 160 3 160 160 147 50.0 9e-36 MNVTRKGHVLELTGEQPEVGTKAPVFSLKNLNNQEINLADYKGKTVLISVVPDIDTRVCS LQTKRFNQEAAKLDGVQIITISNNTVEEQANWCAAEGVEMEMLHDTEDSFGAAYGLYIPE MGRLARAIFVIDPEGTLVYEEIVSEVSSEPDYQQALEATKKV >gi|307679249|gb|GL456998.1| GENE 24 23243 - 25885 3066 880 aa, chain + ## HITS:1 COG:SPy1568 KEGG:ns NR:ns ## COG: SPy1568 COG0525 # Protein_GI_number: 15675460 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Valyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 7 880 4 880 882 1311 72.0 0 MSEEKNLPTKYQPTEIEAGRYQKWLDQDLFKPSGDKKAKPYSIVIPPPNVTGKLHLGHAW DTTLQDMIIRQKRMQGFDTLWLPGMDHAGIATQAKVEEKLAQQGISRYDLGREKFVDQVW EWKEEYASHIREQWAKMGLSLDYSRERFTLDEGLSEAVRKVFVSLYEKDLIYRGEYIINW DPKAKTALSDIEVIHKDIEGAFYHMSYPLSDGSGVVEIATTRPETMLGDTAIAVHPEDER YQELIGKTVVLPLVDKEIPIIADDYVDMEFGTGVVKITPAHDPNDFEVGNRHDLPRVNVM NEDGTMNELAGKYEGMDRFAARKAIVSDLKELGRLIKIETMNHSVGHSERTGVVVEPRLS TQWFVKMGPLAEKAIENQETEDAVEFYPPRFNQTFLRWMENIHDWVISRQLWWGHQIPAW YHKETGEMYVGMEAPADSENWVQDSDVLDTWFSSALWPFSTMGWPDEASEDYQRYFPTST LVTGYDIIAFWVSRMIFQSLEFTGERPFQNVLIHGLIRDEQGRKMSKSLGNGIDPMDVIE KYGADALRWFLSNGSAPGQDVRFSYEKMDASWNFINKIWNASRFVIMNVEGMTAADIDFS GEKTVADRWILTRLNETVARVTELFDRFEFGEAGRQLYNFIWDDFCDWYIEMSKEILYGE NEAAKQTTRSILVYTLDQILRLLHPIMPFVTEEIWEKIPHQGESLVVAEYPVVHEEFNDE AAARGMEVLKEVIRSVRNIRAEVNTPLSKPITLLIKTNDTEVEEFLTANTSYLERFCNPE ELVISREIEAPELAMSAVLTGAELFLPLAGLINIEEEIARLEKELDKWTKEVKRVQGKLS NERFVSNAPDEVVEAERAKEKDYLEKQEAVKERIAQLRSI >gi|307679249|gb|GL456998.1| GENE 25 25932 - 26531 522 199 aa, chain - ## HITS:1 COG:SP1720 KEGG:ns NR:ns ## COG: SP1720 COG0398 # Protein_GI_number: 15901553 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 7 199 13 204 205 125 36.0 4e-29 MTNQKKFLNGLIRWLPLVGLVLFFGLILWGYSRGIFHSVASLQAFIKQFGNYAVLCFVLL QIVQVIIPILPGGISSVAGMLMFGNLQGLLYSYLGLIIGEFIGFLLVRYYGRSFVKIILS PNKYKKFEEILDKNEHNVKKLLIFTMLVPFAPDDIVCLVAGITDISLKEFMKIVLLLKFW SVATYSYLMLYLFQLFGKL >gi|307679249|gb|GL456998.1| GENE 26 26524 - 29088 2135 854 aa, chain - ## HITS:1 COG:SP2231 KEGG:ns NR:ns ## COG: SP2231 COG4485 # Protein_GI_number: 15902035 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 12 851 14 850 850 210 26.0 9e-54 MKNKSKLLWLGSFFLPFLLLLLVWMTLQLAPFGDNNLLVSDLGTQYMPFLSFLKRSFHEG ITTFYSFSNEIGESIVPLAAYYLLSPFNVLAFFFPYEQLPIAILWIITLKLALMGTTMFS YLKYTYQKVDGTTLLFSTSYSFCGFVTVYSQNFMWLDALILFPLILLGLQRLWDQRKWGL YSITLFLAIVTNYYMGYMICLFAVLYSIYWFFKKNTQAHAIRQFFKQSPLFILVSFLTGT ATSFLLLPAAEGMLYTKKADFDVSTFFLTPKFNTSFFSQLGLGSINYELRLDHLPTVFAG LFVTLLCVAYFQTKQIALKERIASAILLFILFLSFWLEAFNTVWHMFQSPAGFPYRNVFI FSFLLIVFAYEVWLKKVTIPWTAPIIFSLLLVIGYGSLYYGPQKNLLISINYLWLSLLFI WLIFFCLRLAHKKALRNYVVVALFLLVSTELTTNFWISFKHMPFGSQATFAQDYRKHSQL IDEKMASAPELYRMKQVIPSKETGFREINNGYNNPLLYGYAGVSSYTSTLTATTQDTLSA LGLYRKNDRRIAYVDNSQLTNLLLNVKYDFLPIEKPTSEKLLKTVGSTKIMENDEAIGMG FLAPTALTKLKLAKNNPLDAQEELLQTLVPTDKPYFKTASLINEPHHTNETIEATFKVNS TGDLHLYIPNLKWKKVTQLKVNQQVISTPIYIATNQLFNLGHFEKGTTVTLSLTAEQVVD LTNWQLQTLDQTAFNRAVDKLRQQALHVNATKKGHLNGALNVPGNDTQLLYTSIPYDQDW QVKSSLQKEPLKTQRILGGFLAVEVPAGKQQLTFAYHPRMIYLGTAVSGTILLGTAGYLG FKKYRRKRQEATHD >gi|307679249|gb|GL456998.1| GENE 27 29337 - 30659 1654 440 aa, chain + ## HITS:1 COG:L0177 KEGG:ns NR:ns ## COG: L0177 COG0285 # Protein_GI_number: 15673139 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Lactococcus lactis # 3 430 1 423 427 448 53.0 1e-125 MQLTIEEAIEWIHSRLPFGSRPGLDRINALLEKIDHPENKVPTIHIAGTNGKGSTVTYLR CLLEEMGLKVGTFTSPYIESFNERIAINGQPISDEQLITYVEKYQPIIQELDQITEVTGI TEFETLTGMALDYFVNEQVDIAVVEVGLGGLLDSTNVVKPLLTGITTIGKDHTEILGETI AEIAYQKAGIIKEKVPVVTGNICADALAVIEKVAQEKQSPIFRFGKEYQVEYLHPDTQWG EVFNFYGEMGKLTKIKVPLLGRHQVENAAVAIQLFDKYCQLQHLPFKERDITQGLAKAQW PARMERLSDEPLIVLDGAHNDHAVKRLVENLRKEFPQHTIHILFSALATKDVDEMIQDLK QVPNAHLYLTSFDYPKAIALTEMEKYEDDLTEIVSLWQFGLGEILEKMSTDDLLLVTGSL YFVSQVRELLLTIGGNDEEI >gi|307679249|gb|GL456998.1| GENE 28 30646 - 31302 728 218 aa, chain + ## HITS:1 COG:CC2096 KEGG:ns NR:ns ## COG: CC2096 COG0637 # Protein_GI_number: 16126335 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Caulobacter vibrioides # 2 218 5 218 221 150 36.0 1e-36 MKKFDGVIFDMDGLLFDTELIYYTSTQKVADAMGLPYSKEVYLDYVGISDEEVQENYRRI YASYGHDTVEEFIRRSYDDTLQEFQSGNVPLKPGVVEFLDFLDDQKIPRLVASSNVRPAI EMLLSHAGIQDRFVGIVSAEDVKRAKPDPEIFQKARQLLGTEAPKTLIFEDSFHGVSAAH SAGIPVIMVPDLLQPTEVIQEKTLHVLESLHQAPHYLK >gi|307679249|gb|GL456998.1| GENE 29 31358 - 31909 508 183 aa, chain + ## HITS:1 COG:BS_ysxA KEGG:ns NR:ns ## COG: BS_ysxA COG2003 # Protein_GI_number: 16079856 # Func_class: L Replication, recombination and repair # Function: DNA repair proteins # Organism: Bacillus subtilis # 6 183 8 185 231 173 47.0 1e-43 MQVSDLFIREMPSDCLPRERLLAIGEKALSNQELLAILLRTGSKEADVMTVAATLLKQFK QLSYLQQATLNELMAIKGIGQVKAIELRAAIELGCRIYQSSQIKFGKVTSSQQVAQRLLQ EMKGLQQEHLICIYLNTKNDIIQQKTIFKGSLNQSIAHPREIFREAVKYSSARILLAHNH PSG >gi|307679249|gb|GL456998.1| GENE 30 31931 - 33298 988 455 aa, chain - ## HITS:1 COG:RSc3171 KEGG:ns NR:ns ## COG: RSc3171 COG1961 # Protein_GI_number: 17547890 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Ralstonia solanacearum # 6 293 14 325 462 139 31.0 1e-32 MANEIKQVALYIRVSTDQQAKHGDSLDEQQYTLNEYVRQQGNMRVFKTYIDDGISGQKLY RDEFQKLLDDVKKGRIDTILFTKLDRWFRNLRHYLNIQEILDKNNVTWLAVTQPFFNTET AMGRSFVNQSMGFAELEAQMTSERIRAVFDNKIRKGEVVSGKVPLGYEIKDKHLVPNEKA EIVKEIFQYYLETGSMRATVRHLENHFSMTRDYQSVRQMLTNRKYIGELRDNKNFCEPII DRDVFERVQLQLSKNIRMNKKRDYMFTGLLVCSECGCNYSATAVISRYVRKDGTTNPNER HLYRCTKNRNNVKKCSNKKGIYETTLENFLLENIEKQAEELSVKMQQEPEVKKTKNTNDK IKKKIDRLKKAYLNEVITLEEYKKDREELEALLIPERDNKIAKIDLNSLHNYSTAEFRDG YKQLTISEKSSLWRQVIKNIVVYPDGNLKINFLGY >gi|307679249|gb|GL456998.1| GENE 31 33408 - 33839 379 143 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|307290162|ref|ZP_07570081.1| ## NR: gi|307290162|ref|ZP_07570081.1| conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX2141] # 1 143 7 149 149 244 100.0 2e-63 MKKIAMLGLVVISIISLAACTDSEVTKVDYDKTNNSIVETDSHAKAEFATIAEKQITKNY AIDNFKIDLSSIKVNQFPDEINADTGEVYKNVMNGGGKFTFQDKIYDFSLIYSKKDESKY TVLYLYSPLDKTKTMEIPLKSDQ >gi|307679249|gb|GL456998.1| GENE 32 33927 - 34271 387 114 aa, chain - ## HITS:1 COG:no KEGG:EF2853 NR:ns ## KEGG: EF2853 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 114 1 114 114 159 78.0 3e-38 MKSIKELVEEYNVELVFTTLHKKACFESEHGVIFVNQNLSTEEQEEAIYHEFKHVKDHAD LMALYNIPIFRSKMEAEAEHYMFECLIEKNDGQFNYSNVITHYNLKMGQETYLK >gi|307679249|gb|GL456998.1| GENE 33 34289 - 34621 291 110 aa, chain - ## HITS:1 COG:lin2607 KEGG:ns NR:ns ## COG: lin2607 COG1396 # Protein_GI_number: 16801669 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 1 67 1 67 107 69 44.0 2e-12 MTAFDRIKKITDRRGISINELENRVGISQNVLYGWKKKTPGGENLTKVAKYLNISTDYIL GIVDNPEPFVEKKTDDLDDVLDNVMSFDGEPLDDHDREVIRAYLKGRFGK >gi|307679249|gb|GL456998.1| GENE 34 34942 - 35118 316 58 aa, chain + ## HITS:1 COG:no KEGG:EF2849 NR:ns ## KEGG: EF2849 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 58 1 58 58 83 87.0 2e-15 MSQDLAIDVRAALIRAGKNQSWLAKQLGISSPYLSDILHGRRRSEEQVQKIKKILNIK >gi|307679249|gb|GL456998.1| GENE 35 35129 - 35272 250 47 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307290166|ref|ZP_07570085.1| ## NR: gi|307290166|ref|ZP_07570085.1| hypothetical protein HMPREF9509_00472 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9512_00383 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9509_00472 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9512_00383 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9495_00197 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9511_00875 [Enterococcus faecalis TX0630] # 1 47 1 47 47 73 100.0 5e-12 MADQVNIDLLGQAYCNVMTRKTGITHTYTIKGKDDKKQNEKNVQKPK >gi|307679249|gb|GL456998.1| GENE 36 35244 - 35465 61 73 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307290167|ref|ZP_07570086.1| ## NR: gi|307290167|ref|ZP_07570086.1| hypothetical protein HMPREF9509_00473 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9509_00473 [Enterococcus faecalis TX0411] conserved hypothetical protein [Enterococcus faecalis TX2141] # 1 73 1 73 73 133 100.0 4e-30 MKKMYRNLNRLTYGLYIFGVGLLIGTKADGKILLIYALVLMTYNLVIELCSFNSWIADNA GEHYKRKQNREVK >gi|307679249|gb|GL456998.1| GENE 37 35466 - 35882 339 138 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256962789|ref|ZP_05566960.1| ## NR: gi|256962789|ref|ZP_05566960.1| predicted protein [Enterococcus faecalis HIP11704] hypothetical protein HMPREF9509_00474 [Enterococcus faecalis TX0411] predicted protein [Enterococcus faecalis HIP11704] hypothetical protein HMPREF9509_00474 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9495_00199 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9511_00873 [Enterococcus faecalis TX0630] # 1 138 1 138 138 244 100.0 1e-63 MNVFDVIGIVAIPLAILCFHNWVISERLSEAENRINSLTIQQMNSRPTFQDSRTGAVLPT RQQAIPPHMKTKTKSVLNEHETEMVKEVVLEKIDVLKNNLQFMQSNQRKHNSVYTLNQLE RQLTLYERIYKKMSDDEE >gi|307679249|gb|GL456998.1| GENE 38 35887 - 35976 76 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEQQIKTHFDGHQSRSITNIKFKESVPHE >gi|307679249|gb|GL456998.1| GENE 39 35969 - 36268 312 99 aa, chain + ## HITS:1 COG:no KEGG:EF2844 NR:ns ## KEGG: EF2844 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 99 1 99 99 155 93.0 4e-37 MNRKIERMIIELEKECKAQNVELLLCAANFETDQGSTAFCGSVIGLAILLQKLLGDLKEQ LSISESCDCPEYVAERAEDAANEKSMDELLTAFLRGDLQ >gi|307679249|gb|GL456998.1| GENE 40 36265 - 36489 274 74 aa, chain + ## HITS:1 COG:no KEGG:EF2843 NR:ns ## KEGG: EF2843 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 74 1 74 74 137 100.0 2e-31 MIEVRGLSDDVYELMLANAQNRIIQSIRTAAANGNTSCVVNSKGLTSTFLSQLETEGFDH VELEENKTKIFWEW >gi|307679249|gb|GL456998.1| GENE 41 36492 - 36599 201 35 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPEFDSLGARQEPPEEKEALEPTWEYDEEEENDNE >gi|307679249|gb|GL456998.1| GENE 42 36592 - 37563 1027 323 aa, chain + ## HITS:1 COG:SA1794 KEGG:ns NR:ns ## COG: SA1794 COG3723 # Protein_GI_number: 15927560 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecE pathway) # Organism: Staphylococcus aureus N315 # 1 294 1 303 306 142 35.0 1e-33 MSNDLTQMTQRSLDEQVIGNLNRLQEQGLEMPPGYSPQNALKSAFFELTNNSGGNLLQLA ANNPETKTSISNALLDMVIQGLSPAKKQCYFIKYGNKVQLMRSYFGTMAVLDRVTGGADI TPVVVREGDVFEIAMDGPDLVVAKHETSFENLDNDIKAAYVVIKLSNGKEVTTVMTKKQI DKSWSKAKTKNVQNDFPEEMAKRTVINRAAKYLINTSNDNDLFVQAAKDTLENEFERKDV TPEREEQTAVLEEKIFTNNKKVIEQENDIEQAKPIEKDDLTKVADQILEEPVQETLDVMA GYETNQKESEADVSTIEEDDYPF >gi|307679249|gb|GL456998.1| GENE 43 37526 - 38341 578 271 aa, chain + ## HITS:1 COG:no KEGG:EF2840 NR:ns ## KEGG: EF2840 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 5 271 1 267 267 486 96.0 1e-136 MSQRLKKTIILSDENYYSTEADLHYMSVSQYKKFLECEAAALAKLKGEWTPESDPKALLV GNYVHSYFESPEIHEAFKEENKSKMFSSRKPFGLLKDFQIAEQMIERLKQEEAFLNIYQG EKEVIVTGEIGGAMWKGKIDCLNLEEKYFVDIKTTKDMHEKKWDERLNRKANFIERFGYV LQMAVYCELLRQQYDKNFLPLIAAVSKQTPSEAKLITISEEKMIYELEELKENIEHVVRV KKGEEEPISCGTCEYCRGHNKITNFTSMDDL >gi|307679249|gb|GL456998.1| GENE 44 38357 - 39145 434 262 aa, chain + ## HITS:1 COG:lin2412 KEGG:ns NR:ns ## COG: lin2412 COG3935 # Protein_GI_number: 16801474 # Func_class: L Replication, recombination and repair # Function: Putative primosome component and related proteins # Organism: Listeria innocua # 5 251 4 251 310 171 46.0 1e-42 MAIGGWIKLYRTIQDHWIWENPQYLKWWLDLIFMANHQDRKILFDGELKTVKVGERITSE KKLSERWEVSRNTVRKFLDLLVKDDMIELSRSRQNGTWYKVSNYAEYQSFSEMKKQRTEQ RSEQQAAHQTEQRTEHKQEPKEPKNLRSNNNNNKGSSIRSIWENNGFGLMSSKTMTDFDY WISDFEKIGASQKDAEQLIVKAIEIAIDANARNYNYINAILKDWEQRGFKSVDDREAARK QKKTIKQQKSNTGHSDYDDLGF >gi|307679249|gb|GL456998.1| GENE 45 39157 - 39996 624 279 aa, chain + ## HITS:1 COG:L0311 KEGG:ns NR:ns ## COG: L0311 COG1484 # Protein_GI_number: 15672431 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Lactococcus lactis # 48 277 59 290 291 104 33.0 2e-22 MQSASDGFSKMIKTLLYITPDPCPECGGNLYAWRAKNKDGSDRCPPTCMECGYKARKKAE DLETEKMFNDSLKARAINYLKYSSLYTDKNLINCRFKTYKTVDTETKLAFEIAKRATTEI LLNKPIHMILSGKSGVGKSHLAMSTAWEVLEKSNYDKRCLFISYAELLEQLKFAMKDEQV RKTITGTLMAEIKSADLVVLDDLGAELGVKGNDSTNFNNDTLNRIVEARQNKATVFTTNL TGKEMSQAYGERILSRIMSNSQGFVMKIEGTSDKRVSGI >gi|307679249|gb|GL456998.1| GENE 46 40136 - 40303 159 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|257078081|ref|ZP_05572442.1| ## NR: gi|257078081|ref|ZP_05572442.1| predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis JH1] hypothetical protein [Enterococcus sp. 7L76] # 1 55 1 55 55 92 98.0 7e-18 MKCVRCQDQRVIWGKDRFNYATPIPCPGCNKDGKAVRAETATKERELKQCNHQQP >gi|307679249|gb|GL456998.1| GENE 47 40282 - 40746 290 154 aa, chain + ## HITS:1 COG:no KEGG:EF2836 NR:ns ## KEGG: EF2836 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 154 1 156 156 248 75.0 5e-65 MQSPTALNKRGNKVTLDGYIFDSEKEAKFYQRFVKTCGLPFEVHPRFIMHEKCEIPGGNI SSIAYSPDFIIKDHDGNWLHVIDIKNSFGAYGIDQSNKLRFRLFAMKYGHPVEAVVIRSN DFKVITQGVTKPLNEKKPFITNNFNYHWRQATNY >gi|307679249|gb|GL456998.1| GENE 48 40758 - 41363 653 201 aa, chain + ## HITS:1 COG:no KEGG:EF2835 NR:ns ## KEGG: EF2835 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 200 1 200 200 300 98.0 2e-80 MTKQVNFRPEVKKVTSKSNGNIEVLLVVSNASLKGKYESLNEFLGKTVSTTIEPETVEYK IPVNKQTNKPNVEYVVNNDGTVEVLKEEQTSLEMGDDVQEVEEVAVQVSKETIDEFIKKA TTIEWPESVTINVRGVLHRIDEGEALEEIAADHDVSVDNLINQVEIARQHFAPFADSWSK NKENIIFPEKTVEDDEEEIEE >gi|307679249|gb|GL456998.1| GENE 49 41388 - 41585 222 65 aa, chain + ## HITS:1 COG:no KEGG:EF2834 NR:ns ## KEGG: EF2834 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 65 4 68 68 103 95.0 3e-21 MLEIYYTPTSAIIADALAKTYEVVSLDKARNIAKKFKASLKQKTDLYVIEGILIDAGYKK EPVNL >gi|307679249|gb|GL456998.1| GENE 50 41639 - 42382 462 247 aa, chain + ## HITS:1 COG:no KEGG:LLKF_1053 NR:ns ## KEGG: LLKF_1053 # Name: pp124 # Def: phage protein # Organism: L.lactis_KF147 # Pathway: not_defined # 2 244 4 248 257 366 76.0 1e-100 MIVWALFDSGNGCYKRSAQKFEDIEIYSIGLDIENKNDHFIHLNLADYSYMFNDNKLFKV LDKLPKPDLIIASPPCESWSVASAMKNGNACWKREDVTDNLFAPQILPSPFTIRTTIDYE DTNYVYERQFLKRVNGELTVFNTIKIIKKYQPRYFIIENPANGKIWEYIEDVLNFKLPFK NLTRYNNYDYPLQKPTKFASNIHLGLKNKVIKQEIAWGNFSKSYNERSNIPEKLVDDIFK KVLEKNK Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:16:38 2011 Seq name: gi|307679248|gb|GL456999.1| Enterococcus faecalis TX2141 genomic scaffold Scfld13, whole genome shotgun sequence Length of sequence - 17065 bp Number of predicted genes - 25, with homology - 21 Number of transcription units - 4, operones - 4 average op.length - 6.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 495 490 ## EF2810 hypothetical protein 2 1 Op 2 . - CDS 513 - 3308 2457 ## COG4926 Phage-related protein 3 1 Op 3 . - CDS 3305 - 4018 664 ## EF2812 hypothetical protein 4 1 Op 4 . - CDS 4015 - 6318 2371 ## COG5280 Phage-related minor tail protein 5 1 Op 5 . - CDS 6334 - 6444 120 ## 6 1 Op 6 . - CDS 6510 - 6965 475 ## EF2814 hypothetical protein 7 1 Op 7 . - CDS 6965 - 7603 665 ## EF2815 phi13 family major tail protein 8 1 Op 8 . - CDS 7609 - 7971 467 ## EF2816 hypothetical protein 9 1 Op 9 . - CDS 7961 - 8299 389 ## EF2817 hypothetical protein 10 1 Op 10 . - CDS 8289 - 8615 318 ## EF2818 minor structural protein, putative 11 1 Op 11 . - CDS 8575 - 8862 237 ## EF2819 hypothetical protein 12 1 Op 12 . - CDS 8865 - 10196 1790 ## EF2820 major capsid protein 13 1 Op 13 . - CDS 10196 - 10732 421 ## COG3740 Phage head maturation protease 14 1 Op 14 . - CDS 10764 - 11933 1213 ## BC2585 portal protein 15 1 Op 15 . - CDS 11952 - 13685 1333 ## COG4626 Phage terminase-like protein, large subunit 16 1 Op 16 . - CDS 13682 - 14140 336 ## EF2824 hypothetical protein - Prom 14172 - 14231 3.5 17 2 Op 1 . - CDS 14244 - 14543 203 ## BC2581 phage endonuclease 18 2 Op 2 . - CDS 14620 - 14907 378 ## gi|257091056|ref|ZP_05585417.1| predicted protein 19 2 Op 3 . - CDS 14923 - 15018 90 ## - Prom 15038 - 15097 2.4 - TRNA 15060 - 15131 63.5 # Trp CCA 0 0 - Term 15229 - 15270 -0.1 20 3 Op 1 . - CDS 15433 - 15900 303 ## EF2828 ArpU family transcriptional regulator 21 3 Op 2 . - CDS 15979 - 16326 261 ## EF1444 hypothetical protein 22 4 Op 1 . - CDS 16460 - 16537 177 ## 23 4 Op 2 . - CDS 16537 - 16776 99 ## gi|315145953|gb|EFT89969.1| hypothetical protein HMPREF9495_00230 24 4 Op 3 . - CDS 16779 - 16871 77 ## 25 4 Op 4 . - CDS 16858 - 16980 142 ## gi|315145954|gb|EFT89970.1| hypothetical protein HMPREF9495_00231 Predicted protein(s) >gi|307679248|gb|GL456999.1| GENE 1 3 - 495 490 164 aa, chain - ## HITS:1 COG:no KEGG:EF2810 NR:ns ## KEGG: EF2810 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 164 1 164 302 322 98.0 3e-87 MVKWQATLSTTEPYNYIGIQNVRQGNRNTEVLEAVLVENALPLDLTGCEVFFESVIDKKY PIQRAAKIVNAKKGIIQYTFDEYSMQSLHRQEAYFSIHKGDNLIGSTQNFSYFVVNAASK TEGEMGSYWQSIEDLIADMTAFINENKGDFTAWMNARKEEFEKW >gi|307679248|gb|GL456999.1| GENE 2 513 - 3308 2457 931 aa, chain - ## HITS:1 COG:L63739_1 KEGG:ns NR:ns ## COG: L63739_1 COG4926 # Protein_GI_number: 15673033 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Lactococcus lactis # 17 752 15 727 727 155 25.0 3e-37 MTQNFIYAYTAIPENLNDNGMALPDWQDLPEINRVLNGAYRFYGNYARDGQYRSYLKKGN FLKAQVEDGSYQYFEIYNIKKNLQSVSVTARHIGFMANKNFIINSFTANGNGTQIMNNLK VALTFKQRFNYLSNVGTTHQFTAKQVGPIDAIIGSNNGNQNLTGVTGGELEMDNFNLKLV KQIGTDNGFRIDFGVNLEAIDEDYDDESIINSLFLIGGVPDNDYDQDKEPITYGFLEIAG VNDSNRRIGKRENSECKTTDELKKWGQSLFDKDRIHEPKVTHTISMVALEHTLEYEDIYE ELSSLHFGDVAHVRAKEVDIEVTERMVEYTWFPTLGKFKDIVLGNDLSLYTSTANNQTQE LKRKIDNRTETLVQNVLNATAWITGNSGGHVVFRPEKAPSEILIMDTNKVATAKRVWRWN LNGLGYSDNGVNGPFGIAMTSKGEIVANFIKVGIIDVNVLQTSFNKATGDVLKLVSGALQ IWNEKTKIMELTKKGMEFWNGNSHVGTMGTKGNPFPELNDVNGNPVVTDGKALLLVGDSS YNTIGLSNEKNTGLVLSGKNQFHLGNHFYFIGKDGTPSTIYADKMFLQGKEVIPGQNGGG GSGAGTGGYPPEVTSDADKFAWDLWSYLLANGYSKAAAAGILGNVQGEVGPSMNPDTEQI GGPAYGWVQWDGSAYPLVGAPTWNGREYVQRLIAAAGIKQDYRTSLAQAQLINWCMFNGQ WSGQVNPLTVDEFKVVSSPKTAAYAFELNFERPAAAHPERQTYAQTWYDKFKDLKASTAT GKAGIEHLETLMGKWLGNGQCYAVPAEYSGFMGGCGLGAGTIYGLSHVIGDTSAAADIGE AYDWNAVGWKVISNPTYKDLVVGAIVNIRRSGQWGSGWTVDPTYGHTGVIYGLDNGRIQT IEQNAEQGQIVAKYDRLYFDGSIQSIVIPPK >gi|307679248|gb|GL456999.1| GENE 3 3305 - 4018 664 237 aa, chain - ## HITS:1 COG:no KEGG:EF2812 NR:ns ## KEGG: EF2812 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 4 237 1 234 234 424 88.0 1e-117 MIFMNRDEPNFIWKGLNAVRDMGCIIENELPDILPNKRYDTYSIVGRSGEFNETFNDYEP FDYEIEDVTIPYENLKEVKRWLTGKSKLITHNDEDKYLDAICAISKPISFKNEWGVFYTF NIEFRCQPFKRKVNEQPVLIKTKAVEITDHGDETAFPYIEIDSKGGDITLSIGSNSLTIL RTQTGIVTIDNEKGKVIQEGLPLFTRGSWIKTNPGQNTLNISGNFTEAKFWNRSAYL >gi|307679248|gb|GL456999.1| GENE 4 4015 - 6318 2371 767 aa, chain - ## HITS:1 COG:L60836_1 KEGG:ns NR:ns ## COG: L60836_1 COG5280 # Protein_GI_number: 15673031 # Func_class: S Function unknown # Function: Phage-related minor tail protein # Organism: Lactococcus lactis # 1 506 1 514 612 228 31.0 4e-59 MSKKESDVVLNFKTNGEVNYSRTIKDINKEMNLAATEYKNQVSAMDKDATQTEKLTATKK KLEKQLSLAEQRTKLLREEYEKSVKETGEYSEQSQKLYKRLLESETGENKLRSALESTNE ALKEQGDLSVKTAEKLAKIEKAGDKMKSVGKKMTVGLTAPIMGIGAASIAAFKELDDSLD SITTATGATGEQLESLQDSFKTVAGQIPTDMENISTGIGEVNTQFGLMDKQLEDTTGRML KFSEINGSDVSQSTINAKKSMDLFRLSIEDLPMILDSVSKTSQDTGVGVDQLFDAVNKGA PQLKAMGLGFSESTTLIGQMEKAGIDSAGTLGYLAKASVVYAKDNKTMQDGLSGTIESIK GATTEQEKLTIASEVFGTKAASKMVEAIDSGALSMDGLADSAKNAAGTVDQTFNDILDPI DQAKIAQNQFKIAMGELGEQVQIALLPAFEAASNAIQKVSTWFSGLTDNQKQTIITIAGV VAAIGPVLVVLGTLASSISSLIPVIAFIASPIGIVIAALAAFVAGIVIAYNKVGWFRDFI NMSFNVIKDIVVGVFKVLADTTKSTFDFITGFIGGAMDGAVKIISDYVNAITRIFGGIID FVTGVFTGDWSRAWQGIVDIFGGIFEGITAVAKAPINAMITLINGFLGGLNNIKIPKWVP GVGGKGFSIAKIPYLAEGGHMINGQAIVGEAGPELLTAKNGKTTVTPLSQEEKARGIGGA LKDGKTIEQHVHIGQVDANNPSELDRMNRKLYKASAQAFYDLGGVPT >gi|307679248|gb|GL456999.1| GENE 5 6334 - 6444 120 36 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKSTPNLWLKSYIQWLTSNTEFEPPASVTMDKSPWW >gi|307679248|gb|GL456999.1| GENE 6 6510 - 6965 475 151 aa, chain - ## HITS:1 COG:no KEGG:EF2814 NR:ns ## KEGG: EF2814 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 137 1 137 151 239 87.0 2e-62 MAKLADYGIVVSDTPTVTIKGHQFPILLTMETMEHIADIYDDDYSKFEEDMNAMLNKSGG RISSKDLSASDLKIMRALIYGMLKTGGLDETPETIFKFLGMNSTIVEVYGACMEVFTEQN FQVDDVKKSKKPQDYQTPQQKKNKKKKHKRK >gi|307679248|gb|GL456999.1| GENE 7 6965 - 7603 665 212 aa, chain - ## HITS:1 COG:no KEGG:EF2815 NR:ns ## KEGG: EF2815 # Name: not_defined # Def: phi13 family major tail protein # Organism: E.faecalis # Pathway: not_defined # 1 212 4 214 214 344 82.0 1e-93 MGKQDVYYFEGLDDILIAMMATPDEVGVAPTYSEVIRLAIATKLAIKGNGSALVKWASSK MFRRVSRETEHEIGLDHVGIPIEVMDEIKGLLAEAGVTFGKNTAREFPYFAFGFIGNIEG GGKKAVWYPKTQLSNVIDEEYATAEDDTKIDDVTANFVANGLKYNNVMYASFDSNRLSAK PGDFEKFIAQPIYDEEQWKKLVTPSTPGGGGE >gi|307679248|gb|GL456999.1| GENE 8 7609 - 7971 467 120 aa, chain - ## HITS:1 COG:no KEGG:EF2816 NR:ns ## KEGG: EF2816 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 120 1 120 120 188 80.0 6e-47 MANNNGFADMADYLGTLAQVDPTKLSLESLTDAASFFVEQLLPQIPRSLLKKKHMADQVK VVIEEDRVQVVFEETAYYWRFAENGSVNQKAQHFASGTFEQNKDQIEKIMTQQILDLWEG >gi|307679248|gb|GL456999.1| GENE 9 7961 - 8299 389 112 aa, chain - ## HITS:1 COG:no KEGG:EF2817 NR:ns ## KEGG: EF2817 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 112 1 112 112 199 91.0 4e-50 MSISFEKLRATLKTVGVPVTRDKAEKGTDYPYIVYSNVSKGKKMASSKVHRRLPYYQISF FTTGTEKDLTDLENALENAGIPYADFVGIQGDENDDTVTNFYTYVRCIEDGQ >gi|307679248|gb|GL456999.1| GENE 10 8289 - 8615 318 108 aa, chain - ## HITS:1 COG:no KEGG:EF2818 NR:ns ## KEGG: EF2818 # Name: not_defined # Def: minor structural protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 108 1 108 108 114 62.0 9e-25 MPKVTLNRMKWKAELCKQVPGLDNNDRPAIIHEKIRDIFYVELGITSQEKYLSKQAKIDV VRRIRVRFDKSITETINTLRIDSVTYKITRIYTDMDKREMELSLAYVD >gi|307679248|gb|GL456999.1| GENE 11 8575 - 8862 237 95 aa, chain - ## HITS:1 COG:no KEGG:EF2819 NR:ns ## KEGG: EF2819 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 6 75 12 81 93 66 48.0 3e-10 MEINLEGFKSHLQFEEGMDDGMLEFYLDMGKKYAKRATDDENSSVAYYIASIFWLYKVPE TEMENAFNALTPLILSEGLVVDDAKSNAKQNEMES >gi|307679248|gb|GL456999.1| GENE 12 8865 - 10196 1790 443 aa, chain - ## HITS:1 COG:no KEGG:EF2820 NR:ns ## KEGG: EF2820 # Name: not_defined # Def: major capsid protein # Organism: E.faecalis # Pathway: not_defined # 8 434 14 449 454 260 40.0 8e-68 MKMRKILEKRAAKLKAKLASMEERAKSETLTRDELSDIESQVEEVTAELDEINDAIAELP EEDVTELGDAVDDLGAAADEIVEEVDGKGTEEDDSEPADDKERSRVLDIIGKGISSRGEE KVKKLTQRSAFLRYLAGRITPNQARSFGVGFNNGKVLVPQELSKEIISYLQEENPLRKFA SVHQTKGTQGFPVQVKQAEANTVTSERDENNLIPFTDIEFDDVYLNPIEFDAIIKVTKKL THMSDFDIEAIVLDELKKAYLRKETFWYFSSPDNKGALAKKAVAFTGKGDNDYLKVVQLK NALPTAMRSGARFMINRAAQTLLESMLDSTGNPILKDAGNDDFDYKLFTYPVEVTDYADK YNETTKKFDPTVPVIYFGNFSYFHIQDVIGSLEIEKLTELFARENKVGFKIYHLNDGQLI YGPFETPVYSLDLSTTPAPNPGE >gi|307679248|gb|GL456999.1| GENE 13 10196 - 10732 421 178 aa, chain - ## HITS:1 COG:RSc1683 KEGG:ns NR:ns ## COG: RSc1683 COG3740 # Protein_GI_number: 17546402 # Func_class: R General function prediction only # Function: Phage head maturation protease # Organism: Ralstonia solanacearum # 4 154 17 171 203 111 46.0 7e-25 MTTRSLDDGSESTVVEGYASVFNSRTNIDGWYDEEIAPGAFSESLAKNKDVRCLFNHDWN YVLGRKSANTLILEEDSRGLHFEVTLPNTTFANDLKESMSRGDINQCSFGFWVTAQEEDY SGDVPLIRITNVDLWEVSIVPLPAYDDTEAALRSKFQEKNIETIKLRNKILKTIGEYK >gi|307679248|gb|GL456999.1| GENE 14 10764 - 11933 1213 389 aa, chain - ## HITS:1 COG:no KEGG:BC2585 NR:ns ## KEGG: BC2585 # Name: not_defined # Def: portal protein # Organism: B.cereus # Pathway: not_defined # 1 389 1 388 394 293 42.0 1e-77 MGIRSWFNQRFRMSSKKKVLGSSILANQFVLGDENILSSSDVYHYLLAISNMFACGSWTI EKEDGKDIKGAKELQSLKHPNGYLTDFEFKRLLVNVYLLQGEVFVVKDGKQLHIMKGITP EISEEGIKQFKYDGHTLYQNEVRQIKNIGLSNNYGNGLIDLARDTLEGVMNAEKALTEKY KKGGLLAYLLKLDTHLSPKNAMQNAMLDAIQGQLEEIPDEGKTVIIPLSKGYAIEGFESP VQDDKILSYLNVYKPELAKFLGFDPDAYNQLLKVDLEKAAIYLKAFVVDPIVQNVCEHLT ELYFGPESTNRISLTIDIKKYLTMSQKITNTQGLVRTMVYTPDDARVDLGAERLNTEEST KLYASKDLIGLDELTELNKSKMEEGDSTG >gi|307679248|gb|GL456999.1| GENE 15 11952 - 13685 1333 577 aa, chain - ## HITS:1 COG:CAC1895 KEGG:ns NR:ns ## COG: CAC1895 COG4626 # Protein_GI_number: 15895169 # Func_class: R General function prediction only # Function: Phage terminase-like protein, large subunit # Organism: Clostridium acetobutylicum # 29 552 65 574 596 141 27.0 4e-33 MIDMTVNYADKFAKSVRRNKELYPKSIHLAVKRYNKWKKRKDIFFDLEKANLMLSFTESF YKHSTGEWSGQPLELEDWQKFYFSNIYGWQKWSDKWQRNVRVIRKSYLQVPKKNGKSLME GAPILYGMYGEGVKGAQFYCLAADFDQAQNVANPLATVIENDNDLLDGTRVYRKEKKVTT ISYAFFEDDFKYQNNLRVLSKREKVDGKNTYIVVADEVHEWEDTSRYDGLKSGQAAQPEP LFLVCSTAGKNSGALGVQIYQDSKHILEEDNDDDWFIMIYEPNKGYNWEDEKVWEMVNPN LYVSFDITFLRGEFKDALRNPFRKAEFLSKHLNVFVNYAENYFDKEQIDNCLVDDLGDIT GEQVTIGIDLSRTTDLTCVSINIPTFNDEGESIIKIKQMYFVPTHNIEEKEKLRNVPYQY YAEQGFVTLCEGRTVDYDLVYNYVIDMYNKYELDIIQINYDPAMSEKLVERFEMEGFNTA EVGQYPSVMNEMLDDFEILVDNGRVQTDNPLFIFCTNNTTVVTNIQSQKAPSKRKSPEHI DGFVAFLIGHKDSMDLMVEVGSEEEYEDYIKQLYNRK >gi|307679248|gb|GL456999.1| GENE 16 13682 - 14140 336 152 aa, chain - ## HITS:1 COG:no KEGG:EF2824 NR:ns ## KEGG: EF2824 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 5 146 4 140 150 98 45.0 8e-20 MAGRKSKKQKILDEALEHKDFERKRIIEILKSLGKFTPALNPLIEMYLDACEVYHIKYLE WKDSGFKSTKVHTNKNGSRNEIKHPLAQQVEVWSEKKTKLLNQLGLDMKSGGLDYVDPLA SENAKKKEEAKKDEPQTNNRLVEFRKMRGGQS >gi|307679248|gb|GL456999.1| GENE 17 14244 - 14543 203 99 aa, chain - ## HITS:1 COG:no KEGG:BC2581 NR:ns ## KEGG: BC2581 # Name: not_defined # Def: phage endonuclease # Organism: B.cereus # Pathway: not_defined # 5 85 37 117 130 63 41.0 2e-09 MAKRYYSKNKSFYKSDEWKSVADAVRFRDRYKCTICHKPVFGRDSQVDHIKPIWLNPNLR LDMNNLRLVCATCHPKVEYRPQTQKEIEMKKNYNPADYF >gi|307679248|gb|GL456999.1| GENE 18 14620 - 14907 378 95 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|257091056|ref|ZP_05585417.1| ## NR: gi|257091056|ref|ZP_05585417.1| predicted protein [Enterococcus faecalis CH188] predicted protein [Enterococcus faecalis CH188] # 1 95 1 95 95 116 96.0 5e-25 MAKAKKEEVQETKAAKKKPAVKEVEQPDDVEVTEEPVEANEITTGTIKVGDLTISNEGIK YESTNDEAPQPIERQTPFGVEVWDPIEKRTVLKDA >gi|307679248|gb|GL456999.1| GENE 19 14923 - 15018 90 31 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFGQTNWRYYLSRGLHLYAVLFVLSVVEFSF >gi|307679248|gb|GL456999.1| GENE 20 15433 - 15900 303 155 aa, chain - ## HITS:1 COG:no KEGG:EF2828 NR:ns ## KEGG: EF2828 # Name: not_defined # Def: ArpU family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 155 1 155 155 290 98.0 2e-77 MVLFDVKKYETPDAKDVDMEQTKHNVSVFLSAYLAARCRVGQPREPKVTASFSLVPPSTA NNVFEAEQMLIQKEEAQEEFDYLHKLFVRGYSAIQHPHKPDVTERRKRIFYDRYINGNPI YLAAQRNCISEESVKQESNMIIVQFASALELVAFK >gi|307679248|gb|GL456999.1| GENE 21 15979 - 16326 261 115 aa, chain - ## HITS:1 COG:no KEGG:EF1444 NR:ns ## KEGG: EF1444 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 115 41 155 161 209 92.0 3e-53 MTYSTDNTIRCYEIKVSMADLKSSAKQTFLGDYNYLVVTNELWEKIQTNPDLKLKYHNQG ILVFSELSHNLGITSVKKAKKQNVALGTRATVLESMVRSLNREVEKFYKINPFWG >gi|307679248|gb|GL456999.1| GENE 22 16460 - 16537 177 25 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGEIAEITYITDYAQQDGYVVLGIK >gi|307679248|gb|GL456999.1| GENE 23 16537 - 16776 99 79 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315145953|gb|EFT89969.1| ## NR: gi|315145953|gb|EFT89969.1| hypothetical protein HMPREF9495_00230 [Enterococcus faecalis TX2141] # 1 79 1 79 79 141 100.0 1e-32 MFKCVAVVNDSTGEFAYILSDYISRFPSKVPVYAKNIELMQRYGELYNNELYKVETCDGF YHIVSSEKYSFIFDEQEEA >gi|307679248|gb|GL456999.1| GENE 24 16779 - 16871 77 30 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSLTEELKKFMKEFKRSSKCQSIRDVDQEE >gi|307679248|gb|GL456999.1| GENE 25 16858 - 16980 142 40 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315145954|gb|EFT89970.1| ## NR: gi|315145954|gb|EFT89970.1| hypothetical protein HMPREF9495_00231 [Enterococcus faecalis TX2141] # 1 40 29 68 68 68 100.0 1e-10 MPRTEYKNYGNHIWNVQDKVRFQEYLSKQESKASEEDVSN Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:18:04 2011 Seq name: gi|307679247|gb|GL457000.1| Enterococcus faecalis TX2141 genomic scaffold Scfld14, whole genome shotgun sequence Length of sequence - 27580 bp Number of predicted genes - 37, with homology - 36 Number of transcription units - 15, operones - 9 average op.length - 3.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 32 - 760 701 ## COG2188 Transcriptional regulators - Prom 875 - 934 7.2 + Prom 833 - 892 8.2 2 2 Op 1 . + CDS 937 - 1863 942 ## SPN23F_18240 hypothetical protein 3 2 Op 2 . + CDS 1880 - 3163 844 ## COG1455 Phosphotransferase system cellobiose-specific component IIC + Term 3213 - 3263 6.3 4 3 Op 1 . + CDS 3552 - 4448 703 ## COG1192 ATPases involved in chromosome partitioning + Term 4451 - 4485 1.1 5 3 Op 2 . + CDS 4525 - 4734 232 ## SSUBM407_p002 omega protein 6 3 Op 3 . + CDS 4751 - 5023 420 ## SSUBM407_p003 epsilon-antitoxin 7 3 Op 4 . + CDS 5025 - 5333 291 ## SSUBM407_p004 toxin of epsilon-zeta postsegregational killing system + Term 5357 - 5391 5.3 8 4 Op 1 1/1.000 - CDS 5887 - 6387 295 ## COG1011 Predicted hydrolase (HAD superfamily) 9 4 Op 2 . - CDS 6392 - 7159 655 ## COG1349 Transcriptional regulators of sugar metabolism + Prom 7495 - 7554 8.8 10 5 Op 1 4/0.000 + CDS 7646 - 8071 681 ## COG0698 Ribose 5-phosphate isomerase RpiB 11 5 Op 2 3/0.000 + CDS 8088 - 8603 550 ## COG0698 Ribose 5-phosphate isomerase RpiB 12 5 Op 3 3/0.000 + CDS 8614 - 9546 934 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 13 5 Op 4 2/0.000 + CDS 9549 - 10529 925 ## COG3684 Tagatose-1,6-bisphosphate aldolase 14 5 Op 5 13/0.000 + CDS 10557 - 10874 400 ## COG1447 Phosphotransferase system cellobiose-specific component IIA 15 5 Op 6 8/0.000 + CDS 10874 - 12580 1466 ## COG1455 Phosphotransferase system cellobiose-specific component IIC + Prom 12584 - 12643 3.3 16 5 Op 7 . + CDS 12727 - 14133 1278 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 17 5 Op 8 . + CDS 14156 - 14428 166 ## SUB0801 hypothetical protein 18 5 Op 9 . + CDS 14449 - 15348 412 ## COG2017 Galactose mutarotase and related enzymes + Term 15359 - 15398 3.1 + Prom 15574 - 15633 6.5 19 6 Tu 1 . + CDS 15785 - 16393 549 ## SSUBM407_p004 toxin of epsilon-zeta postsegregational killing system 20 7 Op 1 . - CDS 16341 - 16610 267 ## pWCFS103_42 putative resolvase 21 7 Op 2 . - CDS 16607 - 16927 312 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs - Prom 16951 - 17010 7.3 + Prom 16944 - 17003 9.6 22 8 Op 1 . + CDS 17110 - 17583 249 ## COG4644 Transposase and inactivated derivatives, TnpA family 23 8 Op 2 . + CDS 17626 - 18822 532 ## pWCFS103_43 putative transposase 24 8 Op 3 . + CDS 18720 - 20081 787 ## COG4644 Transposase and inactivated derivatives, TnpA family + Term 20160 - 20219 7.3 + Prom 20322 - 20381 9.2 25 9 Tu 1 . + CDS 20545 - 21519 816 ## COG3049 Penicillin V acylase and related amidases + Term 21728 - 21780 6.0 + Prom 21812 - 21871 6.7 26 10 Op 1 . + CDS 21964 - 22269 342 ## gi|229546353|ref|ZP_04435078.1| hypothetical protein HMPREF0349_1570 27 10 Op 2 . + CDS 22275 - 22790 409 ## gi|229546354|ref|ZP_04435079.1| hypothetical protein HMPREF0349_1571 + Term 22886 - 22926 0.2 28 11 Op 1 . + CDS 23197 - 23298 85 ## + Prom 23300 - 23359 5.3 29 11 Op 2 . + CDS 23385 - 23627 167 ## gi|229546356|ref|ZP_04435081.1| hypothetical protein HMPREF0349_1573 + Term 23638 - 23688 9.1 + Prom 23766 - 23825 8.9 30 12 Tu 1 . + CDS 24010 - 24876 527 ## Dred_0847 hypothetical protein + Term 24913 - 24955 10.5 + Prom 24912 - 24971 6.4 31 13 Op 1 . + CDS 25015 - 25611 560 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs 32 13 Op 2 . + CDS 25628 - 25789 146 ## EFA0074 hypothetical protein 33 13 Op 3 . + CDS 25786 - 25914 113 ## gi|229546359|ref|ZP_04435084.1| conserved hypothetical protein 34 13 Op 4 . + CDS 25908 - 26132 254 ## EF_C0011 UvrC family transcriptional regulator 35 13 Op 5 . + CDS 26192 - 26401 150 ## EFA0075 hypothetical protein + Prom 26625 - 26684 10.8 36 14 Tu 1 . + CDS 26743 - 27015 149 ## gi|229548470|ref|ZP_04437195.1| hypothetical protein HMPREF0345_0681 - Term 26979 - 27040 20.3 37 15 Tu 1 . - CDS 27048 - 27485 393 ## gi|315145933|gb|EFT89949.1| conserved domain protein - Prom 27520 - 27579 8.4 Predicted protein(s) >gi|307679247|gb|GL457000.1| GENE 1 32 - 760 701 242 aa, chain - ## HITS:1 COG:SPy0715 KEGG:ns NR:ns ## COG: SPy0715 COG2188 # Protein_GI_number: 15674773 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 9 220 6 218 240 85 31.0 6e-17 MLDNTNKLPLYVQLVNTLLEQIQNDMSPNDKLPTEKEICEEYSVSRTTVRLTMNELENRG YIYRIQGKGSFVSSIKKNTINSFFDLDFRAHYEGMNSEELTSELIFFKKEAAQLSLRQKM GLQQEHNIIKIQVLRKLLDIPVALETIILKNQYFNFINEAKLKEEGVDKLINTIDIPLKI VEEKYKARRLNPDEIDLLQSKDEAALVVTKSLYNTNNELIIISERKILTSKLSYQNFIQK EN >gi|307679247|gb|GL457000.1| GENE 2 937 - 1863 942 308 aa, chain + ## HITS:1 COG:no KEGG:SPN23F_18240 NR:ns ## KEGG: SPN23F_18240 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_ATCC700669 # Pathway: not_defined # 4 305 2 295 298 290 50.0 5e-77 MNQKRLLDFSASDFLSVRPMELKQAILASEGRTVMAENVASSSNFLAGVTNAELERAAGA DLILFNALDLFDPQIVGIPDNIEESPVEWIKKAIGRPIGVNLEPVDIKASMNEARSEISI GRIVSPKTLKQANKLGFNFICLTGNPGTGVTNDAIKHAIELSREHFDGLIIAGKMHGAGV DEPVMNLEIAKQFVETGIDMLLVPAPYTVPYFMEQDLKEIADYVRSHNKGKSIEDKVLLL TANGTSQDSSDSDTIKKIALASKACGADIQHIGDSLNGICLPENIFALGQAIRGYRHQMV MLGKSNLR >gi|307679247|gb|GL457000.1| GENE 3 1880 - 3163 844 427 aa, chain + ## HITS:1 COG:BS_licC KEGG:ns NR:ns ## COG: BS_licC COG1455 # Protein_GI_number: 16080909 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Bacillus subtilis # 3 416 10 436 452 346 42.0 6e-95 MMDKVQVFAAKISNQRHLIALRDGMASVMPLIIIGSIFMLIGNFPVPAFTDWLDNIGLLQ FFNKASDSTFGMIGLGVTFSIAYNLAKRYKVDALSAGLIAISAFVILTPILQSEAGNGFP TKYLGSSGLFVGIIVSIVSTEMFQWFVKRNITIKMPDTVPPNVSRAFTAIVPGFFIILAW FFILIFLHYTGIDDIHALIANTIAKPLGLLTKTLPGIIFVIFVQCFFWMFGIHGAQVTGP IIEPLLLQNSDANRIAYQAGQELPNIITYEFLYNFVFTGGAGCVIALAILIFLFSKSKEN KTLGKLSIAPVSFQVAEPLLFGFPTILNFKMVIPFVTAPVVTTLITYYAMKFGIVSKPIG AVVPWTTPPIISGFLATGGKLSGALIQIVTIAVNMLIYYPFFKLDDNEKLKVERSLAERN TASSDLN >gi|307679247|gb|GL457000.1| GENE 4 3552 - 4448 703 298 aa, chain + ## HITS:1 COG:pli0069 KEGG:ns NR:ns ## COG: pli0069 COG1192 # Protein_GI_number: 18450351 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Listeria innocua # 30 298 13 288 293 127 31.0 3e-29 MIQYYYTKKEWGVVMEKEELKILEELRRILNSKNEAIVILNNYFKGGVGKSKLSTMFAYL TDKLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGNLTSSIIHLTDNLDLIP GTFDLMLLPKLTRSWTFENESRLLATLLAPLKSDYDLIIIDTVPTPSVYTNNAIVASDYV MIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIKSNLEELYKQH KEDNLVFQNIIKRSNKVSTWSKNGITEHKGYDKKVLSMYENVFFEMVERIIQLENKKE >gi|307679247|gb|GL457000.1| GENE 5 4525 - 4734 232 69 aa, chain + ## HITS:1 COG:no KEGG:SSUBM407_p002 NR:ns ## KEGG: SSUBM407_p002 # Name: not_defined # Def: omega protein # Organism: S.suis_BM407 # Pathway: not_defined # 1 69 3 71 71 112 95.0 4e-24 MGNLGAQKAKRNDTPISAKKDIMVDKTVRVRADLHHIIKIETAKNGGNVKEVMDQDLEEY IRKYLPDKL >gi|307679247|gb|GL457000.1| GENE 6 4751 - 5023 420 90 aa, chain + ## HITS:1 COG:no KEGG:SSUBM407_p003 NR:ns ## KEGG: SSUBM407_p003 # Name: not_defined # Def: epsilon-antitoxin # Organism: S.suis_BM407 # Pathway: not_defined # 1 90 1 90 90 112 78.0 4e-24 MAVTYEKTFEIEIINELSASVYNRVLNYVLNHELDTKNTRLLEVNLLNQLEVAQEVDLFQ QPFEELQAIHEYWRSMNQYSKQILTKEKVA >gi|307679247|gb|GL457000.1| GENE 7 5025 - 5333 291 102 aa, chain + ## HITS:1 COG:no KEGG:SSUBM407_p004 NR:ns ## KEGG: SSUBM407_p004 # Name: not_defined # Def: toxin of epsilon-zeta postsegregational killing system # Organism: S.suis_BM407 # Pathway: not_defined # 1 100 1 100 287 152 78.0 4e-36 MANITDFTEKQFEDRLEKNVERLTKNRLAVESPTAFLLGGQPGSGKTSLRSAISEETQGN VVIIDNDTFKQQHPNFDELVKLYEKDVVKHATSYSNQLVKLN >gi|307679247|gb|GL457000.1| GENE 8 5887 - 6387 295 166 aa, chain - ## HITS:1 COG:SPy0596 KEGG:ns NR:ns ## COG: SPy0596 COG1011 # Protein_GI_number: 15674680 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Streptococcus pyogenes M1 GAS # 6 151 5 152 300 129 41.0 3e-30 MTYKNIVFDLDDTLYDQQLPFKRSVEKCFPTIDIQQIDNIYKRFRYWSDVAFPKYTKKLI SIEQLRIFRCQKTMEEFGIDSISRTEALDFQADYELDQITMIPEIHQLLLALHKNRIPIG ILTNGPVDLQSRKLQNIGAYQYFEKQNIIISSPLTEELQKIAMKVM >gi|307679247|gb|GL457000.1| GENE 9 6392 - 7159 655 255 aa, chain - ## HITS:1 COG:SPy1924 KEGG:ns NR:ns ## COG: SPy1924 COG1349 # Protein_GI_number: 15675732 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Streptococcus pyogenes M1 GAS # 1 255 1 256 257 291 62.0 1e-78 MNKKRRLEKILDMLKIDGTITIKEIIDELDISDMTARRDLDALEADGLLTRIHGGAQLLS SKKPLEKTHIEKKSLNTKEKIDIAKKACSLIKDGDTIFIGPGTTLEQLALELKGRKGYKI RVITDSLPVFLILNDSETIDLLLLGGEYREITGAFVGSMASTNLKAMRFAKAFVSANAVT HNSIATYSDKEGVIQQLALNNAVEKFLLVDSTKFDRYDFFNFYNLDQLDTIITDNQISPQ HLEEFSQYTTILKAD >gi|307679247|gb|GL457000.1| GENE 10 7646 - 8071 681 141 aa, chain + ## HITS:1 COG:SP1193 KEGG:ns NR:ns ## COG: SP1193 COG0698 # Protein_GI_number: 15901058 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Streptococcus pneumoniae TIGR4 # 1 140 1 140 141 215 83.0 2e-56 MAIVVGADLKGTRLKDIVKNFLVEEGFEVIDVTKDGQDFVDVTLAVASEVNKDEQNLGIV IDAYGAGSFMVATKIKGMVAAEVSDERSAYMTRGHNNSRMITVGAEIVGDELAKNIAKGF VNGKYDGGRHQIRVDMLNKMC >gi|307679247|gb|GL457000.1| GENE 11 8088 - 8603 550 171 aa, chain + ## HITS:1 COG:SP1192 KEGG:ns NR:ns ## COG: SP1192 COG0698 # Protein_GI_number: 15901057 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Streptococcus pneumoniae TIGR4 # 1 171 1 171 171 311 88.0 3e-85 MRIAIGCDHIVTDEKMAVSEFLKSKGHEVLDFGTYDHARTHYPIYGKKVGEAVVSGQADL GVCICGTGVGINNAVNKVPGVRSALVRDMTSAIYAKEELNANVIGFGGMITGGLLMNDII EAFIEAEYKPTEENKKLIAKIEHVETHNAHQADEDFFTEFLERWDRGDYHD >gi|307679247|gb|GL457000.1| GENE 12 8614 - 9546 934 310 aa, chain + ## HITS:1 COG:SP1191 KEGG:ns NR:ns ## COG: SP1191 COG1105 # Protein_GI_number: 15901056 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Streptococcus pneumoniae TIGR4 # 1 310 1 309 309 399 67.0 1e-111 MILTVTLNPSVDISYPLETLKIDTVNRVKDVSKTAGGKGLNVTRVLYESGDKVTATGFLG GKIGEFIESELEQSPVSPAFYKISGNTRNCIAILHEGNQTEILEQGPTISHEEAEGFLDH YSNLIKQSEVVTISGSLPSRLPNDYYEKLIQLASDEGVAVVLDCSGAPLETVLKSSAKPT AIKPNNEELSQLLGKEVTKDIEELKDVLKESLFSGIEWIVVSLGRNGAFAKHGDVFYKVD IPDIPVVNPVGSGDSTVAGIASALNSKKSDADLLKHAMTLGMLNAQETMTGHVNMTNYET LNSQIGVKEV >gi|307679247|gb|GL457000.1| GENE 13 9549 - 10529 925 326 aa, chain + ## HITS:1 COG:SP1190 KEGG:ns NR:ns ## COG: SP1190 COG3684 # Protein_GI_number: 15901055 # Func_class: G Carbohydrate transport and metabolism # Function: Tagatose-1,6-bisphosphate aldolase # Organism: Streptococcus pneumoniae TIGR4 # 1 326 1 326 326 541 86.0 1e-154 MILTEQKRKSLEKISDKNGVISALAFDQRGALKRLMAQYQDTEPTVAQMEELKVLVAEEL TKYASSMLLDPEYGLPATKALDKEAGLLLAYEKTGYDTSSTKRLPDCLDVWSAKRIKEQG ADAVKFLLYYDVDSSDELNQQKQAYIERVGSECVAEDIPFFLEILAYDEEISDAGSVEYA KVKPRKVIEAMKVFSDPRFNIDVLKVEVPVNVKYVEGFADGEVVYSKAEAADFFKAQEEA TNLPYIYLSAGVSAKLFQETLQFAHDSGAKFNGVLCGRATWAGSVEPYIKEGEKAAREWL RTTGFENIDELNKVLVKTASPWTDKV >gi|307679247|gb|GL457000.1| GENE 14 10557 - 10874 400 105 aa, chain + ## HITS:1 COG:SP1186 KEGG:ns NR:ns ## COG: SP1186 COG1447 # Protein_GI_number: 15901051 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIA # Organism: Streptococcus pneumoniae TIGR4 # 1 105 1 105 105 154 82.0 6e-38 MNREEMTLLGFEIVAYAGDARSKLLEALKAAENGDFAKADSLVVEAGSCIAEAHNSQTAM LAREASGEELPYSVTMMHGQDHLMTTVLLKDVIHHLIELYKRGAK >gi|307679247|gb|GL457000.1| GENE 15 10874 - 12580 1466 568 aa, chain + ## HITS:1 COG:SPy1917 KEGG:ns NR:ns ## COG: SPy1917 COG1455 # Protein_GI_number: 15675726 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Streptococcus pyogenes M1 GAS # 1 568 1 564 565 903 82.0 0 MHKLIELIEKGKPFFEKISRNIYLRAIRDGFIAGMPVILFSSIFILIAYVPNAWGFHWSK DIETFLMTPYSYSMGILAFFVGGTTAKALTDSMNRDLPATNQINFLSTMLASMVGFLLMA AEPAKEGGFLTAFTGTKGLLTAFIAAFVTVNVYKVCVKNNVTIRMPEEVPPNISQVFKDL IPFTVSVVLLYGFELIVKGTLGVTVAESIGTLLAPLFSAADGYLGITLIFGAYAFFWFVG IHGPSIVEPAIAAITYANIDANLHLIQAGQHADKVITSGTQMFIVTMGGTGATLIVPFLF MWICKSERNRAIGRASVVPTFFGVNEPILFGAPIVLNPIFFVPFIFAPIVNVWIFKFFVD TLNMNSFSANLPWVTPGPLGIVLGTNFQVLSFILAGLLVVVDTIIYYPFVKVYDEQILEE ERSGKTNDALKEKVAANFNTAKADAVLGKAGVAKEDVAANNNITKETNVLVLCAGGGTSG LLANALNKAAAEYNVPVKAAAGGYGAHREMLPEFDLVILAPQVASNFDDMKAETDKLGIK LAKTEGAQYIKLTRDGQGALAFVQQQFD >gi|307679247|gb|GL457000.1| GENE 16 12727 - 14133 1278 468 aa, chain + ## HITS:1 COG:SP1184 KEGG:ns NR:ns ## COG: SP1184 COG2723 # Protein_GI_number: 15901049 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Streptococcus pneumoniae TIGR4 # 1 468 1 468 468 897 94.0 0 MTKTLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNYWYTAEPASDFYHKYPVDL ELAEKYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHNLFAECHKRHVEPFVTLHHFDTP EVLHSDGDFLNRENIEHFVDYAAFCFEEFPEVNYWTTFNEIGPIGDGQYLVGKFPPGIQY DLAKVFQSHHNMMVSHARAVKLYKDKGYKGEIGVVHALPTKYPYDPENPADVRAAELEDI IHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALEAAKDLNDFLGINYYM SDWMQAFDGETEIIHNGKGEKGSSKYQIKGVGRRIAPDYVPRTDWDWIIYPEGLYDQIMR VKNDYPNYKKIYITENGLGYKDEFVDNTVYDDGRIDYVKKHLEVLSDAIADGANVKGYFI WSLMDVFSWSNGYEKRYGLFYVDFDTQERYPKKSAHWYKKVAETQVIE >gi|307679247|gb|GL457000.1| GENE 17 14156 - 14428 166 90 aa, chain + ## HITS:1 COG:no KEGG:SUB0801 NR:ns ## KEGG: SUB0801 # Name: not_defined # Def: hypothetical protein # Organism: S.uberis # Pathway: not_defined # 5 90 4 90 92 82 47.0 4e-15 MLSDTLEKVQHLFRPNFEKVYIVSFEDCPMIPELEANPLLKCGKWYVSTGKEWICHSDLE LSAFEWEFLQSLDVEIRETIHFEVNYLPFQ >gi|307679247|gb|GL457000.1| GENE 18 14449 - 15348 412 299 aa, chain + ## HITS:1 COG:CAC3032 KEGG:ns NR:ns ## COG: CAC3032 COG2017 # Protein_GI_number: 15896283 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Clostridium acetobutylicum # 1 297 1 296 298 173 34.0 3e-43 MTIELKNEYLTVQFKTLGGQLTSIKDKDGIEYLWQADPNYWNGQAPILFPICGSLRNDWA IYRPQERLFFTGLIRRHGFVRKEEFILEEVNDNSVTFSIKPNAEMLDNYLYQFELRVVYT LNGKSIRTEFQVTNLEMEKTMPYFIGAHPAFNCPLVEGENYEDYYIEFSEVESCSIPKSF PETGLLDLQDRTPFLENQKILDLDYSLFSHDAITLDQLKSRSVTLRSRKSGKGLRVDFDD FPNLILWSTTNKSPFIALEPWSGLSTSLEEGNFLEDKRQVTKISPQETSRKIYDITILN >gi|307679247|gb|GL457000.1| GENE 19 15785 - 16393 549 202 aa, chain + ## HITS:1 COG:no KEGG:SSUBM407_p004 NR:ns ## KEGG: SSUBM407_p004 # Name: not_defined # Def: toxin of epsilon-zeta postsegregational killing system # Organism: S.suis_BM407 # Pathway: not_defined # 1 159 114 272 287 282 93.0 5e-75 MIEGTGRTTDVPIQTATMLESKGYETKMYVTAVPKIESYLGTIERYETMYADDPMTARAT PKQAHDIVVKNLPINLETLHKTGLFSDIRLYNREGVKLYSSLETPSISPKETLERKLNRK VSGKEIQPTLERIEQKMVQNQHQETPEFKAIQQKMESLQPPTPPIRGHWNIHTENSGRKP NNYWAIKLVVRFFCLAFSILVD >gi|307679247|gb|GL457000.1| GENE 20 16341 - 16610 267 89 aa, chain - ## HITS:1 COG:no KEGG:pWCFS103_42 NR:ns ## KEGG: pWCFS103_42 # Name: tnpR2 # Def: putative resolvase # Organism: L.plantarum # Pathway: not_defined # 1 87 107 193 195 114 78.0 1e-24 MMSVIAELERNLLADRVRKGIEASKKRGVAIGRPKIPQEKLDIAVRMYKSGDYSVKEIIE TNQISTGTFYREINRLKLRKLNKRTEQLT >gi|307679247|gb|GL457000.1| GENE 21 16607 - 16927 312 106 aa, chain - ## HITS:1 COG:XFa0019 KEGG:ns NR:ns ## COG: XFa0019 COG1961 # Protein_GI_number: 10956730 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Xylella fastidiosa 9a5c # 1 102 4 105 188 95 43.0 2e-20 MIIGYARVSKDDQNLGRQIDQLKNFGAEKIIQEKYTGTKRNRPGIEQLLQTIRKGDIVVV ESISRLGRNTLDILNLIQELDQKQIQFVSLKENMNTSTPTGRPCYK >gi|307679247|gb|GL457000.1| GENE 22 17110 - 17583 249 157 aa, chain + ## HITS:1 COG:YPCD1.90c KEGG:ns NR:ns ## COG: YPCD1.90c COG4644 # Protein_GI_number: 16082773 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, TnpA family # Organism: Yersinia pestis # 2 155 9 164 771 87 35.0 1e-17 MKKEKIFGTFVGAPSEEQLQLYFQLTDFDKEIINEMRLPSTKLGFAVQLGTVRFLGTFFT DFSKIPLEVIIYLANQLSIDPREFDSYSRKMTISQHAQLIKERYSYRNFQDSDCQKFLYD WLLSRASHTTETTEMLSDMLLKKCLEEKILLPGVSIF >gi|307679247|gb|GL457000.1| GENE 23 17626 - 18822 532 398 aa, chain + ## HITS:1 COG:no KEGG:pWCFS103_43 NR:ns ## KEGG: pWCFS103_43 # Name: tnpA # Def: putative transposase # Organism: L.plantarum # Pathway: not_defined # 3 360 179 536 997 390 55.0 1e-107 MKQLSLIPSEEESEKLLNLLSLMGVPVQGAFTKMDILRAPLIDEGRKEITRGFHRLKEFQ QFHTSEWDFSTIPEGKVKHLATYAFKAKSSLIQRMSIQKKLALLVAFVYEYEKIATDELL TALIKYYESIFRRAKNKESKERLRTLKDLDRAAFTLSEIVELLLDDSIEIDCLRSRVFDQ YPAEDIVNAVFQVKKLVKNEQEPIAIAELIQSYRKIRKFIALIIETLTIENGHYDEDCMA VWCLIQRRIPKPITFRQFESVENHIPKKWAYYIHYNPNEVNQSMLILGIELLIQSLNKHD IFVPKSEKFIDPMSCLISKETWEQQKESLLSQLELPSSSVEAIKQLEEDLSLSYNETVKN GPILKWLELKNRITKIKLSCLNSEKHVKIRKISSSKIA >gi|307679247|gb|GL457000.1| GENE 24 18720 - 20081 787 453 aa, chain + ## HITS:1 COG:YPCD1.90c KEGG:ns NR:ns ## COG: YPCD1.90c COG4644 # Protein_GI_number: 16082773 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, TnpA family # Organism: Yersinia pestis # 13 451 324 762 771 424 45.0 1e-118 MARIEKQDNKDKIIVSKLRKTRENKEDKQFKNRVKALMPKIDLPDLLLEVNQQLDLTSCF HHINESNTRMDHLDISVLAVLLAEACNIGFSPVSKEGIESLKYDRLMYVNHQYVRLDTLS ATNKKIISAYKKLPISLVWGNNQMASADGIRYTTPQRSLYSRSNPKYFGRSRGVTFYNFV SDQYIGFHGMVVPGTLRDSLYLLDGFLNQTSGLEPKQIMTDTAGYSDLVFGLFGLLGFQF SPRIANNHGTKLWRIDLTADYKMLNEVSQNKINTTRIEKNWDEILRVAGSLKSGKVNATE LTKALQRNGQPTELGKTIIEYGKVYKTKHQLRYISDEIYARQILEQLNKGEARHTLCRHI FYGKKGKLYQTYIDGMEEQLTALSIVTNAIIYWNTLYLERVIDQMRVEGFDCSEEKINKL SPLLVEHINFVGKYSFRYDPSLKNGHLRPLNTQ >gi|307679247|gb|GL457000.1| GENE 25 20545 - 21519 816 324 aa, chain + ## HITS:1 COG:BS_yxeI KEGG:ns NR:ns ## COG: BS_yxeI COG3049 # Protein_GI_number: 16081005 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Penicillin V acylase and related amidases # Organism: Bacillus subtilis # 1 305 1 309 328 177 31.0 2e-44 MCTAITYVSKDHYFGRNFDYEISYNEVVTITPRNYKFSFREVGNLDHHFAIIGIAAGIAD YPLYYDAINEKGLGMAGLNFSGYADYKKIEEGKENVSPFEFIPWVLGQCSTVDEAKKLLK NLNLVNINFSDELPLSPLHWLLADKEQSIVVESTKEGLRVFDNPVGVLTNNPTFDYQLFN LNNYRVLSTRTPKNNFSDQIELDIYSRGMGGIGLPGDLSSVSRFVKATFTKLNSVSRSSE YESISQFFHILSSVEQQKGLCDVGDEKYEYTIYSSCCNLEKGIYYYRTYDNSQITAVDMN KENLEKDSLIVYPMVETQQINYAN >gi|307679247|gb|GL457000.1| GENE 26 21964 - 22269 342 101 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229546353|ref|ZP_04435078.1| ## NR: gi|229546353|ref|ZP_04435078.1| hypothetical protein HMPREF0349_1570 [Enterococcus faecalis TX1322] hypothetical protein HMPREF0345_0672 [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis CH188] conserved hypothetical protein [Enterococcus faecalis X98] hypothetical protein HMPREF9498_00518 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9509_00007 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9512_00797 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9504_01261 [Enterococcus faecalis TX0102] hypothetical protein HMPREF0345_0672 [Enterococcus faecalis ATCC 29200] hypothetical protein HMPREF0349_1570 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis CH188] conserved hypothetical protein [Enterococcus faecalis X98] hypothetical protein HMPREF9509_00007 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9498_00518 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9504_01261 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9512_00797 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9496_01850 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9501_01700 [Enterococcus faecalis TX0027] hypothetical protein HMPREF9495_00257 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9503_00627 [Enterococcus faecalis TX0043] hypothetical protein HMPREF9508_00427 [Enterococcus faecalis TX0312] hypothetical protein HMPREF9513_00275 [Enterococcus faecalis TX0645] hypothetical protein HMPREF9511_01564 [Enterococcus faecalis TX0630] hypothetical protein EF62_0880 [Enterococcus faecalis 62] # 1 101 1 101 101 173 100.0 5e-42 MKKVCAILMISASVLGMVPSNAPIFTAEINYAHENELQMNPFVIAFIDKVKQNLVLDDNY HTVKLTEAATDEKIQKLYAEATALLVKQSSVLSSEEKQIIC >gi|307679247|gb|GL457000.1| GENE 27 22275 - 22790 409 171 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229546354|ref|ZP_04435079.1| ## NR: gi|229546354|ref|ZP_04435079.1| hypothetical protein HMPREF0349_1571 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis JH1] hypothetical protein HMPREF9509_00006 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9512_00796 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9504_01262 [Enterococcus faecalis TX0102] hypothetical protein HMPREF0349_1571 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis JH1] hypothetical protein HMPREF9509_00006 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9504_01262 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9512_00796 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9496_01851 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9501_01699 [Enterococcus faecalis TX0027] hypothetical protein HMPREF9495_00258 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9513_00276 [Enterococcus faecalis TX0645] hypothetical protein HMPREF9511_01565 [Enterococcus faecalis TX0630] conserved domain protein [Enterococcus faecalis TX1467] # 1 171 5 175 175 258 100.0 1e-67 MRNELKKDQNQAYEEEKIKYYQQQFNELFNDSNNQMLKETITGSQLLTLFESFIEYKSER RNRDENIMNRISNLFEILNGAIVLWSNELEKKVDDLFSVREEALKETVSQSDIEQLASDA EELDKLGVSYAYVEKITHKVKLVAKAVKFIYEMPQDTLVREISIASTKQEE >gi|307679247|gb|GL457000.1| GENE 28 23197 - 23298 85 33 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLYGLEGAIEGVNDICLSQETKEELKAYYNSLK >gi|307679247|gb|GL457000.1| GENE 29 23385 - 23627 167 80 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229546356|ref|ZP_04435081.1| ## NR: gi|229546356|ref|ZP_04435081.1| hypothetical protein HMPREF0349_1573 [Enterococcus faecalis TX1322] hypothetical protein HMPREF0345_0675 [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis ATCC 4200] conserved hypothetical protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] conserved domain protein [Enterococcus faecalis TX4248] conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX0635] hypothetical protein HMPREF0345_0675 [Enterococcus faecalis ATCC 29200] hypothetical protein HMPREF0349_1573 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] conserved hypothetical protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX4248] conserved domain protein [Enterococcus faecalis TX0635] conserved domain protein [Enterococcus faecalis TX4000] conserved domain protein [Enterococcus faecalis TX0027] conserved domain protein [Enterococcus faecalis TX2141] conserved domain protein [Enterococcus faecalis TX0043] conserved domain protein [Enterococcus faecalis TX0312] conserved domain protein [Enterococcus faecalis TX0645] conserved domain protein [Enterococcus faecalis TX0630] hypothetical protein HMPREF9520_00209 [Enterococcus faecalis TX1467] # 1 80 1 80 80 144 100.0 2e-33 MQIYAHERGNPYGCTYFISFHEIELVILLVWKDNFFTYNKQEVENNLNKMADVSTSAKRT IYQFIEKTNSLLYLSYKELH >gi|307679247|gb|GL457000.1| GENE 30 24010 - 24876 527 288 aa, chain + ## HITS:1 COG:no KEGG:Dred_0847 NR:ns ## KEGG: Dred_0847 # Name: not_defined # Def: hypothetical protein # Organism: D.reducens # Pathway: not_defined # 5 255 6 251 269 127 35.0 5e-28 MKETVSVFMDESGKNKNEISLIGSVVVPNNFYCSKSVMELNDKLKREEISFHLTDYKKSQ LKDYLNLFDLFVSNENLLRFNVVAFKRGRFSNHMLKGKIDDMVYSKIPERSIYGSLRGYS SFTEVEANIYIEYATDYEKRGLDKLIKNQLNIHSLYRYDHFKVVKAKLIYKNTEIGLEFT DACLGVLRNIIENRDVKTTSSSKVSRTLIYKKQLVYELINRHRNFFEHIDLFELDDKGLL ERIDMRKYINLFQSKYLKEKELYGEVAEVYGDSKYHVKRKPRKIPYRQ >gi|307679247|gb|GL457000.1| GENE 31 25015 - 25611 560 198 aa, chain + ## HITS:1 COG:PSLT045 KEGG:ns NR:ns ## COG: PSLT045 COG1961 # Protein_GI_number: 17233496 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Salmonella typhimurium LT2 # 1 184 1 177 186 103 36.0 2e-22 MSIYGYSRVSTSNQDYKTQIQKLERAGAEKIFSEKYTGTKKEGRKELEELLSIVKTGDKV LVTKIDRLARSIVDLNSIISSLNNSGVTIIFLDNALTFEPNKSDSMQTLMMNMLGSFAQF ERDLIVTRTQEGKQWHRANNKNYREGRPKRVLNDKYKHALELMETNSMREVERKTGISLS TLKRIKKQAKEEQLLSEK >gi|307679247|gb|GL457000.1| GENE 32 25628 - 25789 146 53 aa, chain + ## HITS:1 COG:no KEGG:EFA0074 NR:ns ## KEGG: EFA0074 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 53 1 53 95 86 92.0 3e-16 MENREKIIQLFKNPLVTGYGIEIMSNGRLYSANFQRYKNRVKKEENPLIFLRA >gi|307679247|gb|GL457000.1| GENE 33 25786 - 25914 113 42 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229546359|ref|ZP_04435084.1| ## NR: gi|229546359|ref|ZP_04435084.1| conserved hypothetical protein [Enterococcus faecalis TX1322] PcfZ [Enterococcus faecalis] conserved domain protein [Enterococcus faecalis TX0635] conserved domain protein [Enterococcus faecalis TX0102] conserved hypothetical protein [Enterococcus faecalis TX1322] PcfZ [Enterococcus faecalis] conserved domain protein [Enterococcus faecalis TX0102] conserved domain protein [Enterococcus faecalis TX0635] conserved domain protein [Enterococcus faecalis TX4000] conserved domain protein [Enterococcus faecalis TX0645] conserved domain protein [Enterococcus faecalis TX0630] # 1 42 63 104 104 67 100.0 4e-10 MTAKVEQLFLELAEEVIRTNPKTKQEFKEMIKEYSYKEDNKW >gi|307679247|gb|GL457000.1| GENE 34 25908 - 26132 254 74 aa, chain + ## HITS:1 COG:no KEGG:EF_C0011 NR:ns ## KEGG: EF_C0011 # Name: not_defined # Def: UvrC family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 64 1 64 69 64 45.0 2e-09 MVVRKTYDHWGIEISTWNKSNIVTFIDCDCGQLAKRELGKYNQFKCDSCNKEYKLYQGNY IAIDEKINEVAQND >gi|307679247|gb|GL457000.1| GENE 35 26192 - 26401 150 69 aa, chain + ## HITS:1 COG:no KEGG:EFA0075 NR:ns ## KEGG: EFA0075 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 69 14 82 82 116 94.0 3e-25 MNFGYLNFGTKDAVLVIAIFIILILTVLFRWSALEFVFSSGAVGIAFFAGNMKQDKRISD RQNKKIDKR >gi|307679247|gb|GL457000.1| GENE 36 26743 - 27015 149 90 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229548470|ref|ZP_04437195.1| ## NR: gi|229548470|ref|ZP_04437195.1| hypothetical protein HMPREF0345_0681 [Enterococcus faecalis ATCC 29200] hypothetical protein HMPREF0345_0681 [Enterococcus faecalis ATCC 29200] # 1 89 1 89 108 130 100.0 5e-29 MGIFTNFSDFLEERRKKKHDKIRKKAEAMKRQGKSPVKKGWGTMVDTGSGGINKNPIDRV YDIGQQQKNLSSKSDEKNKFSEYQKIKKRS >gi|307679247|gb|GL457000.1| GENE 37 27048 - 27485 393 145 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315145933|gb|EFT89949.1| ## NR: gi|315145933|gb|EFT89949.1| conserved domain protein [Enterococcus faecalis TX2141] # 1 145 5 149 149 256 100.0 3e-67 MKFKSVLFLFLASIILFGFSQQTNAESQESNVTPSQESYAHDVLNEQLSSNLSTTDAIQQ RAAYAPSTWYYTTYRSYVGSPPATIYVSVENTAVERRSHGYLTLISTGYAPGNWRTYAGT LYLQGGPYPIPSSLKATDLLVKQDN Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:19:24 2011 Seq name: gi|307679246|gb|GL457001.1| Enterococcus faecalis TX2141 genomic scaffold Scfld17, whole genome shotgun sequence Length of sequence - 2269 bp Number of predicted genes - 4, with homology - 3 Number of transcription units - 3, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 1145 836 ## gi|256959307|ref|ZP_05563478.1| MobE mobilization protein + Prom 1147 - 1206 8.7 2 2 Op 1 . + CDS 1234 - 1434 196 ## gi|32470456|ref|NP_863357.1| hypothetical protein pAMalpha1_p8 3 2 Op 2 . + CDS 1457 - 1768 70 ## gi|32470455|ref|NP_863356.1| hypothetical protein pAMalpha1_p7 + Term 1868 - 1906 3.0 - Term 1840 - 1902 5.0 4 3 Tu 1 . - CDS 1953 - 2039 140 ## - Prom 2196 - 2255 4.8 Predicted protein(s) >gi|307679246|gb|GL457001.1| GENE 1 3 - 1145 836 380 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256959307|ref|ZP_05563478.1| ## NR: gi|256959307|ref|ZP_05563478.1| MobE mobilization protein [Enterococcus faecalis DS5] MobE mobilization protein [Enterococcus faecalis DS5] # 1 380 207 586 586 628 100.0 1e-178 PQKHLSVKEYKDVQKELQVSKQELANQEQILAEKERELHSYEQAIFRIDRLLEEKNEEVK GKVQAMNQLETKRNEIINSLQTTVLPDLANVKEKKFSLNGLKYVLSASDFSAIKSITKDF ETLRTQNKHLKIENNNLAQKNKELTQVNHEQELQITELAYELTLKKEQLTAFEEKQLNYD QSEQIKQELDTTTQTVSVLETENKRLKDKITDLTYDFSELNEKYQEIKLKFDGLTTYLHE RLGHAKETILFTIQQGVKYLQNAPKLKKSLERYSKDRTYLIDEKGTLFLPPDTGSKGVTM SLNPHFYPLKAPFYNRETGCYEFVGEYMANGRSRTNTLQLSEEQVLEKKAFTFEQSTDKK AWQQSKKYSRDMSKGRGLSR >gi|307679246|gb|GL457001.1| GENE 2 1234 - 1434 196 66 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|32470456|ref|NP_863357.1| ## NR: gi|32470456|ref|NP_863357.1| hypothetical protein pAMalpha1_p8 [Enterococcus faecalis] conserved hypothetical protein [Enterococcus faecalis ATCC 4200] conserved hypothetical protein [Enterococcus faecalis T8] conserved hypothetical protein [Enterococcus faecalis DS5] conserved hypothetical protein [Enterococcus faecalis AR01/DG] hypothetical protein HMPREF9498_00317 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9505_00191 [Enterococcus faecalis TX0109] conserved hypothetical protein [Enterococcus faecalis TX0635] hypothetical protein [Enterococcus faecalis] unknown [Enterococcus faecalis] conserved hypothetical protein [Enterococcus faecalis ATCC 4200] conserved hypothetical protein [Enterococcus faecalis T8] conserved hypothetical protein [Enterococcus faecalis DS5] conserved hypothetical protein [Enterococcus faecalis ARO1/DG] hypothetical protein [Enterococcus sp. 7L76] hypothetical protein HMPREF9505_00191 [Enterococcus faecalis TX0109] hypothetical protein HMPREF9498_00317 [Enterococcus faecalis TX4248] conserved hypothetical protein [Enterococcus faecalis TX0635] conserved hypothetical protein [Enterococcus faecalis TX2141] conserved hypothetical protein [Enterococcus faecalis 62] # 1 66 1 66 66 123 100.0 5e-27 MKKLLVLILGVSFISVALSSTTEASAREWDSIECQPGFYWKKGGWTAGGYHKAGGFCIPM HTRWTK >gi|307679246|gb|GL457001.1| GENE 3 1457 - 1768 70 103 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|32470455|ref|NP_863356.1| ## NR: gi|32470455|ref|NP_863356.1| hypothetical protein pAMalpha1_p7 [Enterococcus faecalis] conserved hypothetical protein [Enterococcus faecalis T2] conserved hypothetical protein [Enterococcus faecalis T8] conserved hypothetical protein [Enterococcus faecalis DS5] conserved hypothetical protein [Enterococcus faecalis AR01/DG] hypothetical protein HMPREF9498_00318 [Enterococcus faecalis TX4248] hypothetical protein [Enterococcus faecalis] unknown [Enterococcus faecalis] conserved hypothetical protein [Enterococcus faecalis T2] conserved hypothetical protein [Enterococcus faecalis T8] conserved hypothetical protein [Enterococcus faecalis DS5] conserved hypothetical protein [Enterococcus faecalis ARO1/DG] hypothetical protein HMPREF9498_00318 [Enterococcus faecalis TX4248] conserved hypothetical protein [Enterococcus faecalis TX2141] putative membrane protein [Enterococcus faecalis 62] # 1 103 1 103 103 132 100.0 6e-30 MKKYLIKNIFYITIPLVLSYITSFLVNIDLPILIIIFYGILLFFLIPSEVYLGSTMDYNA KVVNPTYRPENKSFEDSPKSKILSILIVLLCLILTISIWYFSN >gi|307679246|gb|GL457001.1| GENE 4 1953 - 2039 140 28 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIESLISLIIAPLFVGLVLLLVDRWLDD Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:20:00 2011 Seq name: gi|307679245|gb|GL457002.1| Enterococcus faecalis TX2141 genomic scaffold Scfld22, whole genome shotgun sequence Length of sequence - 4153 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 380 436 ## COG0582 Integrase 2 1 Op 2 . - CDS 396 - 977 281 ## LLKF_0692 hypothetical protein - Prom 1000 - 1059 9.9 - Term 1004 - 1063 16.1 3 2 Tu 1 . - CDS 1105 - 4152 2803 ## COG3587 Restriction endonuclease Predicted protein(s) >gi|307679245|gb|GL457002.1| GENE 1 2 - 380 436 126 aa, chain - ## HITS:1 COG:pli0062 KEGG:ns NR:ns ## COG: pli0062 COG0582 # Protein_GI_number: 18450344 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Listeria innocua # 50 126 1 77 147 140 87.0 7e-34 MVQQIVLPIKDSNILKMVQDTLLDSFRSGRRNYTIFQVGKATLLRVSDVMKLKKSDVFNP DGTVKQTAFIHDQKTGKANTLYLKPVQHDLLMYHDWLVQQNMNSEWLFPSTARPDRHITE KQFYKI >gi|307679245|gb|GL457002.1| GENE 2 396 - 977 281 193 aa, chain - ## HITS:1 COG:no KEGG:LLKF_0692 NR:ns ## KEGG: LLKF_0692 # Name: not_defined # Def: hypothetical protein # Organism: L.lactis_KF147 # Pathway: not_defined # 1 193 1 193 193 267 80.0 2e-70 MNRFFKPIKYLGILTVVIVISAVITYIINPNLSDTLNSVSGNVPKSVSQKSGLQLVVAYI FNNGFKVPIGMLILSIIPIRFLYWIQPLFTVILPGILFGIVFRYSLAKGFVILISSLPHM LFEVFAFCVWMVALDQFNKWIRYKISKKKSADTNLLKELKLLLSPYIKYVLPLIVIAAFT ETYVADWISHILS >gi|307679245|gb|GL457002.1| GENE 3 1105 - 4152 2803 1015 aa, chain - ## HITS:1 COG:PM0699 KEGG:ns NR:ns ## COG: PM0699 COG3587 # Protein_GI_number: 15602564 # Func_class: V Defense mechanisms # Function: Restriction endonuclease # Organism: Pasteurella multocida # 1 1011 24 1041 1043 727 43.0 0 GQPRQTSMSYMMDIGKEKNITLDIVNGFKNADISLSDSDLLKNIQAMQKKNGILTDNKLV KMSIGGKDKNTKIVNSKDCLTLTVEMETGTGKTYTYIKTMLELNKQYGWSKFIIVVPSIA IREGVAKTFESTSEHFKQAYGIGIRHFIYNSSQLDKIEAFASDAGINVMIVNTQAFNARG VDARRIDMVLDQFRGRRPIDVIAATNPIMIIDEPQSVLGNGSKAELNATRVGLAKFNPLF FINYSATHRDNYNMVYRLDAVDAYQKHLVKKIAVKGIEISGSNASSGYLYLEAIKEKPAL KARIQFEKLSATGNVVKTSKLLDKGDNIYPLSGEIESYNSGFVVSEINAVDQFVEFTNGQ KLSVGEVVGNTNDDDLRRIQIRETIHSHLTKEESLFKREIKTLSLFFIDEVVKYKDYEAI EDKGTYARIFEEEYENIVRDRLTDTLLDEKYRTYLERELESPEKVHAGYFSIDKKGKSVD SKIKRGSESSDDISAYDLIMKNKERLLSFEEPVRFIFSHSALKEGWDNPNVFQIATLRQS SSDIKKRQEIGRGLRLAVNQTGDRQDEQSLGENEVQQVNVLTVIANESYESFARDLQSEI ADAIKNRPKLIEPKLFEGRELVVEDSNGQVTAKMVVDNTQAAEIWASLKAGKLIEKNKQT SATYQKLSAAEQLEAIQEVLDEEFQVFALPIQKLINSVYNLKDLPIENENKRTILKLNRE KYASKEFKNLWSKINRKSYYTVDFDDQEIIEKSIQLINKKLTVKTLKARITEGNMQATDT GTIFTVDGKRTTDIYSPVNTVKYDLIGEVSQKVGLLRKTVAYILSGIHPEQFAKYQSNPE NFIVQISNIINAVKAQNIISHIVYNKLDEVWDEDAIFANSDIQGIMGQNVFDAKKHLYDK VRVDSEVEKRFASDLDVEQNVEMYVKLPGGFYINTPIGKYNPDWAVVLNEPDHKHVYFIA ETKGVSENIELNLKGVENAKIEAARQHFKIISNSEVTYEVVDSYDKMMDKLSSHI Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:20:04 2011 Seq name: gi|307679244|gb|GL457003.1| Enterococcus faecalis TX2141 genomic scaffold Scfld29, whole genome shotgun sequence Length of sequence - 2343 bp Number of predicted genes - 5, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 77 71 ## 2 1 Op 2 . - CDS 112 - 2028 1530 ## COG2189 Adenine specific DNA methylase Mod 3 1 Op 3 . - CDS 2032 - 2196 134 ## LKI_10366 hypothetical protein 4 1 Op 4 . - CDS 2180 - 2275 191 ## 5 1 Op 5 . - CDS 2262 - 2342 76 ## Predicted protein(s) >gi|307679244|gb|GL457003.1| GENE 1 2 - 77 71 25 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKLQYKNQQFQLDAVEAITSIFEGQ >gi|307679244|gb|GL457003.1| GENE 2 112 - 2028 1530 638 aa, chain - ## HITS:1 COG:PM0698 KEGG:ns NR:ns ## COG: PM0698 COG2189 # Protein_GI_number: 15602563 # Func_class: L Replication, recombination and repair # Function: Adenine specific DNA methylase Mod # Organism: Pasteurella multocida # 18 638 42 636 636 361 39.0 3e-99 MPDIPEKVNLSDVNSRQVDPELLNELRDLFVKAEEQKERYDFTWNGKAKAYFEAAAPTTK TLRVQPEESVNFEKSENLFITGDNLEALKLLQESYLGKIDMIYIDPPYNTGKDFVYQDNF KKTQKENDVSEGIIDEDGNRLVKNEKSNGRYHSDWLTMMYPRLKLARNLLSDTGVIFVSI DDNEQANLKLLMDEIFGEDNFIGNLSVENNPKGRKNAKFISVSSEFVILYAKKINESKFI ENIPKRSTEMIKDENGNFVHNSGKRILVGENKFNDVVTNYSSKKHYSVYYQPEKQKIHFR KEKDILDIDNELIGEGYIRYISETNNKFVENTYSIDKFMELFETNSLQFTDTKIFEKNFS TTKRLKSIVTNLKYQAIINNKPTDYHLDLTTTKAKQTLKLLFDNREVFSSPKSTDLIKLF LTLFSSKNITVFDFFAGSGTTADSVMQLNAEDGGNRKFILGTLDEVTPDNSEARKAGYTT IDQLSRERIRRAAAKIGDKSGFRALKVDATGLKEDVFKTAGELDQTDLLEDIDNHSDNRS DYDLLYDVLVDGALEYNRPITIETMNDEQIIKYDYLGELSGVVCYFGENLTDELTRQIAT LKPLLAVFKESTFDKSAQKVNVMEQFRIISPDTKVKVI >gi|307679244|gb|GL457003.1| GENE 3 2032 - 2196 134 54 aa, chain - ## HITS:1 COG:no KEGG:LKI_10366 NR:ns ## KEGG: LKI_10366 # Name: not_defined # Def: hypothetical protein # Organism: L.kimchii # Pathway: not_defined # 1 54 132 185 185 78 90.0 7e-14 MKQQVEKIQLLHELESEIDRINNQIKRTVQINKKQLLARERYALEQCLAKAKGE >gi|307679244|gb|GL457003.1| GENE 4 2180 - 2275 191 31 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKNFNNIDERVVDDLKKELKAQSKLTFETTS >gi|307679244|gb|GL457003.1| GENE 5 2262 - 2342 76 26 aa, chain - ## HITS:0 COG:no KEGG:no NR:no KNDVGGHLVSKEKYYLEGVLGENEKF Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:20:18 2011 Seq name: gi|307679243|gb|GL457004.1| Enterococcus faecalis TX2141 genomic scaffold Scfld34, whole genome shotgun sequence Length of sequence - 562 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 4 - 153 146 ## gi|315145888|gb|EFT89904.1| ribbon-helix-helix protein, CopG family - Prom 177 - 236 8.0 Predicted protein(s) >gi|307679243|gb|GL457004.1| GENE 1 4 - 153 146 49 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315145888|gb|EFT89904.1| ## NR: gi|315145888|gb|EFT89904.1| ribbon-helix-helix protein, CopG family [Enterococcus faecalis TX2141] # 1 49 1 49 49 63 100.0 4e-09 MSNEKKKVTLSLPVETIKKLEEVSKKYGMSKSGLVNLLINQVSEKGTIY Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:20:42 2011 Seq name: gi|307679242|gb|GL457005.1| Enterococcus faecalis TX2141 genomic scaffold Scfld35, whole genome shotgun sequence Length of sequence - 64095 bp Number of predicted genes - 57, with homology - 56 Number of transcription units - 28, operones - 13 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 286 122 ## EF3023 polysaccharide lyase family protein 8 + Term 314 - 364 8.5 - Term 299 - 355 16.3 2 2 Tu 1 . - CDS 357 - 1745 1645 ## COG1301 Na+/H+-dicarboxylate symporters - Prom 1899 - 1958 5.4 3 3 Tu 1 . + CDS 2092 - 2601 600 ## EF3021 hypothetical protein + Term 2623 - 2656 2.2 + Prom 2624 - 2683 6.8 4 4 Op 1 . + CDS 2741 - 3205 516 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 5 4 Op 2 . + CDS 3208 - 4134 817 ## EF3019 hypothetical protein + Term 4226 - 4268 7.0 + Prom 4159 - 4218 5.9 6 5 Tu 1 . + CDS 4286 - 6067 2220 ## EF3018 hypothetical protein + Term 6074 - 6111 7.3 + Prom 6093 - 6152 2.8 7 6 Op 1 . + CDS 6179 - 6919 706 ## COG0101 Pseudouridylate synthase + Prom 6924 - 6983 2.9 8 6 Op 2 . + CDS 7022 - 7405 358 ## COG1226 Kef-type K+ transport systems, predicted NAD-binding component + Term 7428 - 7475 11.3 + Prom 7442 - 7501 8.9 9 7 Tu 1 . + CDS 7534 - 8796 1518 ## COG3633 Na+/serine symporter + Term 8799 - 8848 16.2 + Prom 8862 - 8921 2.7 10 8 Tu 1 . + CDS 8946 - 11498 2547 ## COG0474 Cation transport ATPase + Term 11521 - 11564 6.7 - Term 11466 - 11498 2.0 11 9 Tu 1 . - CDS 11504 - 12952 1097 ## EF3013 hypothetical protein - Prom 12976 - 13035 3.7 - Term 13000 - 13033 4.0 12 10 Op 1 . - CDS 13044 - 14225 926 ## EF3012 hypothetical protein 13 10 Op 2 . - CDS 14269 - 15693 1622 ## EF3011 hypothetical protein 14 10 Op 3 . - CDS 15680 - 17227 1954 ## COG0074 Succinyl-CoA synthetase, alpha subunit 15 10 Op 4 . - CDS 17205 - 18071 513 ## EF3009 hypothetical protein - Prom 18279 - 18338 5.0 16 11 Op 1 . + CDS 18202 - 19872 1246 ## COG2508 Regulator of polyketide synthase expression 17 11 Op 2 . + CDS 19906 - 20811 957 ## SPCG_0521 hypothetical protein + Term 20887 - 20922 1.0 + Prom 20836 - 20895 6.5 18 12 Op 1 4/0.000 + CDS 20985 - 23972 3095 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 19 12 Op 2 27/0.000 + CDS 23995 - 25587 1687 ## COG0286 Type I restriction-modification system methyltransferase subunit 20 12 Op 3 2/0.333 + CDS 25596 - 26807 772 ## COG0732 Restriction endonuclease S subunits 21 12 Op 4 . + CDS 26891 - 27820 713 ## COG0582 Integrase + Term 27830 - 27863 4.0 - Term 27815 - 27853 2.2 22 13 Tu 1 . - CDS 27858 - 29027 460 ## COG0732 Restriction endonuclease S subunits - Prom 29097 - 29156 7.2 + Prom 29071 - 29130 6.1 23 14 Tu 1 . + CDS 29236 - 30429 715 ## EF3007 hypothetical protein + Term 30435 - 30483 9.1 - Term 30422 - 30470 12.1 24 15 Tu 1 . - CDS 30476 - 31228 736 ## EF2225 MerR family transcriptional regulator - Prom 31256 - 31315 6.0 + Prom 31257 - 31316 5.3 25 16 Op 1 . + CDS 31340 - 31804 538 ## BCAH820_3046 PTS system, IIC component 26 16 Op 2 8/0.000 + CDS 31814 - 32641 857 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 27 16 Op 3 . + CDS 32634 - 34046 1474 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 28 16 Op 4 . + CDS 34095 - 34184 79 ## - Term 34088 - 34144 15.6 29 17 Tu 1 . - CDS 34150 - 35217 997 ## COG3049 Penicillin V acylase and related amidases - Prom 35450 - 35509 8.4 + Prom 35168 - 35227 5.8 30 18 Tu 1 . + CDS 35436 - 37055 1744 ## COG0659 Sulfate permease and related transporters (MFS superfamily) + Term 37155 - 37227 22.1 - Term 37151 - 37205 15.1 31 19 Tu 1 . - CDS 37219 - 37911 638 ## EF3003 putative lipoprotein - Prom 37950 - 38009 12.2 + Prom 37909 - 37968 12.4 32 20 Op 1 2/0.333 + CDS 38104 - 38556 619 ## COG1846 Transcriptional regulators 33 20 Op 2 . + CDS 38575 - 39087 624 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 39100 - 39151 12.2 + Prom 39433 - 39492 6.5 34 21 Op 1 2/0.333 + CDS 39682 - 41178 1669 ## COG1953 Cytosine/uracil/thiamine/allantoin permeases 35 21 Op 2 4/0.000 + CDS 41179 - 42543 1583 ## COG0044 Dihydroorotase and related cyclic amidohydrolases + Prom 42643 - 42702 6.1 36 21 Op 3 4/0.000 + CDS 42725 - 43948 1327 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 37 21 Op 4 . + CDS 43970 - 44755 1036 ## COG3257 Uncharacterized protein, possibly involved in glyoxylate utilization 38 22 Tu 1 . - CDS 44873 - 46498 1421 ## COG2508 Regulator of polyketide synthase expression - Prom 46524 - 46583 6.6 + Prom 46471 - 46530 9.9 39 23 Op 1 . + CDS 46670 - 47878 1356 ## COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase + Term 47893 - 47939 5.3 40 23 Op 2 21/0.000 + CDS 47976 - 48437 604 ## COG0477 Permeases of the major facilitator superfamily 41 23 Op 3 . + CDS 48406 - 49071 684 ## COG0477 Permeases of the major facilitator superfamily + Term 49077 - 49126 10.0 - Term 49063 - 49114 11.2 42 24 Tu 1 . - CDS 49117 - 49377 389 ## COG1937 Uncharacterized protein conserved in bacteria - Prom 49404 - 49463 5.6 + Prom 49358 - 49417 4.0 43 25 Op 1 3/0.000 + CDS 49546 - 49860 427 ## COG0607 Rhodanese-related sulfurtransferase 44 25 Op 2 3/0.000 + CDS 49861 - 51510 2316 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases 45 25 Op 3 . + CDS 51503 - 51802 453 ## COG0607 Rhodanese-related sulfurtransferase + Term 51815 - 51855 5.1 + Prom 51874 - 51933 10.0 46 26 Op 1 24/0.000 + CDS 51974 - 53140 1581 ## COG0845 Membrane-fusion protein 47 26 Op 2 36/0.000 + CDS 53133 - 53807 352 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 48 26 Op 3 . + CDS 53804 - 55012 1407 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Term 55027 - 55062 4.4 + Prom 55270 - 55329 7.4 49 27 Op 1 . + CDS 55393 - 56058 592 ## EF2984 transcriptional regulator, putative + Prom 56072 - 56131 4.2 50 27 Op 2 . + CDS 56155 - 57603 1650 ## COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases 51 27 Op 3 . + CDS 57669 - 58196 568 ## COG0406 Fructose-2,6-bisphosphatase + Term 58200 - 58243 9.6 + Prom 58225 - 58284 7.4 52 28 Op 1 3/0.000 + CDS 58317 - 61130 2054 ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain 53 28 Op 2 9/0.000 + CDS 61202 - 61603 442 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 54 28 Op 3 13/0.000 + CDS 61623 - 62117 629 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 55 28 Op 4 13/0.000 + CDS 62141 - 62890 1001 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 56 28 Op 5 . + CDS 62890 - 63741 1076 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 57 28 Op 6 . + CDS 63753 - 64095 273 ## COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase] Predicted protein(s) >gi|307679242|gb|GL457005.1| GENE 1 2 - 286 122 94 aa, chain + ## HITS:1 COG:no KEGG:EF3023 NR:ns ## KEGG: EF3023 # Name: not_defined # Def: polysaccharide lyase family protein 8 # Organism: E.faecalis # Pathway: not_defined # 2 94 1280 1372 1372 169 97.0 3e-41 TELRSAVKQLTLKNSGENKKEQKNGGNNGHLNTSTGVDQTGTKQVKPSSQGGFRKASQFL PSTGEKKSIALVIIGLLVIASGCLLVFRKSKSKK >gi|307679242|gb|GL457005.1| GENE 2 357 - 1745 1645 462 aa, chain - ## HITS:1 COG:BH3820 KEGG:ns NR:ns ## COG: BH3820 COG1301 # Protein_GI_number: 15616382 # Func_class: C Energy production and conversion # Function: Na+/H+-dicarboxylate symporters # Organism: Bacillus halodurans # 11 441 1 399 413 174 32.0 3e-43 MEKKKREVKGISFTKKMVISLVGGLIVGLGFLFLREHLVRSNQGAVWQTINQILFQDISD PEKGQSAIGLFYIIGQLFINGLQLVILPMVFTSITLAICHITDTQKLGRISYKTIFGFLS MSLIALLTAGIVGYSVYLTGAFNVSLSETLAPVEVSTSGNPLMVIVNAVTKNIGSAFSDN GAILAVVVLAVITGLCINALGDKIRVFKKLIEEVNAMVTLFLTFVITKFAPIAVFMLLVR TFASYGIDYLKPALVYVVTTTATLLAFLMIGYPLFILFATKLNPVPFIKKIMKVVVFGFS TSSSAATLPLNTKTTVEELGVDSDVAAFVLPLGMTINMNGTAIMQVIAAIFVAGVAGYEV TPANIALIAILALMSSIGTPAAPGAGGIILFTILTGLNYNNEIAIATYSLILAINRPIEM LVTSLNVVGDSATAIYVAHSEDLLDEATYLTDVADLQNAEAE >gi|307679242|gb|GL457005.1| GENE 3 2092 - 2601 600 169 aa, chain + ## HITS:1 COG:no KEGG:EF3021 NR:ns ## KEGG: EF3021 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 169 1 169 169 294 99.0 8e-79 MKVTQLSSETLDRAHERFEETLAQMTVAEANTMPAPLIKSVTWLMWHTARELDLQISALN HSDPLWLSQHWTEKFALDLPDETEDWHHTPEEAAKVVVAEKQLLSDYLAASVALTKSYLD QIKEEQLSDVIDKNWTPPVTRQVRLVSVIDDAVMHSGQAVYTRRLVIGK >gi|307679242|gb|GL457005.1| GENE 4 2741 - 3205 516 154 aa, chain + ## HITS:1 COG:L0142 KEGG:ns NR:ns ## COG: L0142 COG1595 # Protein_GI_number: 15674148 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Lactococcus lactis # 17 154 17 156 164 60 31.0 1e-09 MKKEANFDEVLFSLGQEVIQVLIRRGASLEDAQDAVSQTYTTIFSILPEITSENLRPWFF RVTFNYYITMYRKKKRERTFVANSHPVQSIEKMEGQELLLLIDSLKDEEQELVLLKYYYQ LSYAEIALILELSVENVRKKLYRTRQKLKKELEE >gi|307679242|gb|GL457005.1| GENE 5 3208 - 4134 817 308 aa, chain + ## HITS:1 COG:no KEGG:EF3019 NR:ns ## KEGG: EF3019 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 308 1 308 308 588 99.0 1e-167 MDLKKSIRKAKRKQFIVIGAITVVSFAVLFVGFFVGMDKLSTKNYHTLLEVINDQEMIAS PNTQLDSQVIANSSPFGGEVVTNRSKNIDGYTVEWSNLRSRYSFFRNSIDWNEVYPGSYY SSKNFYEYNRQTKQKVASFYNPAITNYYGGIKNELSELDKMENQVAEVAISFDKPYPYEE VRKMLPSNVNLVWLYVYSETVNEAEGPSGTLPYGFQLSMDDHNEIFDPENDKQHFFETLE KSPMFADNQEGQKFIQQNKNKKVEKLPIWGVMLTGQTKNFKALQNEPFVRGASIGVTAPI VPYIQPEK >gi|307679242|gb|GL457005.1| GENE 6 4286 - 6067 2220 593 aa, chain + ## HITS:1 COG:no KEGG:EF3018 NR:ns ## KEGG: EF3018 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 593 1 593 593 1096 99.0 0 MFFNFIGLTLFFGIGILVANGAKIVANKGKKSKGTILLMAMELLLLGIFLFVTLPSKNLS TVLWINLIGAVIASGVLLSTRLASKVEVLGIQKGRKEVGKNTNKTANKDWSGKILGVAVL AMILLTIVSSITKISSIDEIYQTIPLKTEEKAEVLTSAKETPIAIAPQTAKRKMLQKFSV IPNSNMFTLDGITAQVVNGEYVYVATVEFNGFFKWLKLGEVPGYFIISATDINAQPEFVE KPIVYTPSAYFGKDAARKIYSAYPGYAATGTINLELDDQGNPYYIQTLYKEYGVSGRMHY NEFKTAVLNATTGEVNVYDSQKAPSFVDAPITSSAANSLNEFFGRYSQGWWNQTMFGAKK DVKIPTENGIYASGQITPMMNKEGNQLLYFTDFTSSEKDQDSALGYSLINARTGQVTYYR DTKVGIMDSDGAISIASKIYPEKKWKASMPVLYNIDGVPTWIVSLMDSKGIFKKYVYINA VDNDIVIDADTAQGALDAYRIELVTKGSNNENTDKANLKTMQGKVARVSVVAGEAQTVVS FLLEDEKTIFSVTTNNSPLALFLKEGDQVTFKAVVTENAKAANVEELKIAGLN >gi|307679242|gb|GL457005.1| GENE 7 6179 - 6919 706 246 aa, chain + ## HITS:1 COG:BH0167 KEGG:ns NR:ns ## COG: BH0167 COG0101 # Protein_GI_number: 15612730 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Bacillus halodurans # 1 238 1 238 263 203 44.0 2e-52 MRNIKLTIEYDGKRYLGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARG QVANFKTTSSLTTTEMLSFLNRYLPGDIVVKEVTEMPERFHARYNATGKQYSYYVWNSPI PNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIERNG EMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGLFL DEVYYK >gi|307679242|gb|GL457005.1| GENE 8 7022 - 7405 358 127 aa, chain + ## HITS:1 COG:MA2218 KEGG:ns NR:ns ## COG: MA2218 COG1226 # Protein_GI_number: 20091059 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, predicted NAD-binding component # Organism: Methanosarcina acetivorans str.C2A # 2 118 1 117 136 84 37.0 5e-17 MLSLLISVKKLFSSFLGILKKEDTRALFFLLATTLLSGTIFYSTVEKLSPLDSLYLSFMT LTTIGYGDVHPVTDLGKIFTMVYATVGLGIMAMFISVVAKSYLYSKQSHHHHHHKNKEHS AEKSSEK >gi|307679242|gb|GL457005.1| GENE 9 7534 - 8796 1518 420 aa, chain + ## HITS:1 COG:VCA0036 KEGG:ns NR:ns ## COG: VCA0036 COG3633 # Protein_GI_number: 15600807 # Func_class: E Amino acid transport and metabolism # Function: Na+/serine symporter # Organism: Vibrio cholerae # 9 397 14 403 405 365 55.0 1e-101 MVKAIRKLSLIQKIMIGIVIGTTLGFLVPEWTFISVLGELFVGALKAIAPILVFVLIIAS LAQQKAGAKTYVGSILVVYLLATFLAAVVAVTASYLFPVKIVLEAAQEAQAAPTQLSDVL SNVLTSVVQNPIQAMIEGNYLSVLFWSSLIGIGLRQSSVATKDVIANLSTGITTVVQMII GIAPIGILGLVFHSVATTGIAGLAKYGQLLLLLIGTMAVVALVVYPAIVFWNIRQNPYPL VFFVLKESAIPAFFTRSSAANIPINMELAKAMDLNEESYAVSIPLGATINMGGAAITITI MTLATVHTLGMSVPIYLALLLSIIAAVSACGASGIAGGSLLLIPLACSLFGISNDIAMQV VGVGFIVGVVQDSIETALNSSSDLLFTTSVELADRRKNGEIIDVKALIGKSQLVVEQENI >gi|307679242|gb|GL457005.1| GENE 10 8946 - 11498 2547 850 aa, chain + ## HITS:1 COG:YPO0451 KEGG:ns NR:ns ## COG: YPO0451 COG0474 # Protein_GI_number: 16120780 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Yersinia pestis # 3 837 19 901 908 694 43.0 0 MKWYQLSSTKVIEQTKTKQTGLSSEERQQRLQTNGPNKIEEKQQLKTWQKLAKHFTDLLM VVLLAAAILKFATGEVVEGSIIFLVVLVNGFVGYWQERKAEESLDGLKQMMGQEAVVLID GQKTTVSSETLVLGDVVTLQAGDVVPADLRLFDVHNLMIEESILTGESEAVEKITGFLNE ELPTGDQKNLAFSGTLVQAGSALGVVVETGDSTEVGKINHALQSVDQKTTPLVRKMHQLN KQIFQGIMVLILFLIFFTTFRHGMEWSLLFSAMIALIVAMIPEGLPAVLTMILSMGVHEM ARENAIIKGMPSVETLGSMTVICSDKTGTLTKNEMTVMDVVTEEMTIVKEIMANCQELKL QDQQKIADLQGNPTELALLQYVDQDQLSLRPVEKKIPFSSSYKYMATRHPQAEGSIIYVK GAPEVLLQLSTLSDNQKGAWQAQAAQLAQKGQRVLGFAYKTVTSQQELTHETLSGLTFAG LAGIIDPPKESAIQAVKESQEAGISVKMITGDHKDTAQAIGEQVGLKHTKKVLEGLEIDA MSDEELAQHVQKVDVFARTTPEHKLRIVTALQNNGEIVGMTGDGVNDAPALKKADVGIAM GIKGSEVTKQAADMVLADDNFHTIAKAVKEGRRIFDNLKKTITFFLPTSLAQGLIVVWAL LMNHPLPLTPVQILWVNMVTTITLSYALGFEKASADTMKRPPRDVNEGILTKYSIFRIVY VSVLIMVPGYLMALQFEGQALQQTFLLQSIVLAQAAYMINCRKLVDPSLSTGFFQNKVLF ASLGILFLLQALVVYWPVAQQLIGTTSLNGLQLAMIFVHVVSLFFLVEGEKYITKRFMTK ESQKTSECPR >gi|307679242|gb|GL457005.1| GENE 11 11504 - 12952 1097 482 aa, chain - ## HITS:1 COG:no KEGG:EF3013 NR:ns ## KEGG: EF3013 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 482 1 482 482 817 98.0 0 MYSMLKRVITEKDLLRQIRLLEQLLNVPQLTAKRLATQIQTTERTVFSDLQYIRSQLPAD WSIETDSSGIRLRNQGNAQTNELWSLFLPQSISIQLLKELLFTKELVTTSFLSTSGVSYE TLKRHIKKMNLALRDFHLTIQLTTTTIQLIGAESNIRIFYHRLLVPFTHNNYFFDDYSIH EEHYFQFLKQVYSSELTVETEEIFGACWFFINTIRNKTNCRVSQFSFDSKDVLFQLYQPS LAKLYASEGIYLQGEESFFAFFCFLESWNYDNVYGETLASALHTHYSQLRKSLQQFVTNL STEEARPDLIQTNLLDNLLLLFIKYTESPTLSEQFQLEYQELMTEQAAEDLALSKSNQEL LEILSRYTTIEEPTYFLSLASLLEKQASYSIQAQTMTAYFLFQGEPAWKAFLQQELAAYL GTRVKLQAIEYVELSQLTLNEADIIISNFPLDHLDLPVFYLSLIPTKNELRRLAELTLHS YF >gi|307679242|gb|GL457005.1| GENE 12 13044 - 14225 926 393 aa, chain - ## HITS:1 COG:no KEGG:EF3012 NR:ns ## KEGG: EF3012 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 393 1 393 393 704 98.0 0 MKNKSINYEAVLALVVKIFLGMFLYWIMNGFRHVSNFFPYNDVVTKVNQQGFYKFIYFVM NFTEGEFYGGLFTTLFLLIGGLIAWQLYRKNSKWQGFAIAGGSGAWPWVLASQLLSLFLT IYVFDFTRFFTKEVLWLPTFIVVVGTPPALTLVYGPGWKKLGTISLLSALFTFPFANWLN AQLMPLLNVPGTVSNVTTMAFVGWIVSAICHQLPWMVPSVAPIAQKRQKQPKIENTQTFQ WSIRRTFADFSEAWFYGNELVGGLVILGVLTDWFVNINHITNGSGLVPDILMGQMIASAV GVFLYRKHFAEEGWYPTFMPLVSIVPGVILMMGGGFWLSLTIAVLAGISAAPVGSYIAKR LPPFVPGAVGFVSGMAVVTILLSAVLHTFDIFV >gi|307679242|gb|GL457005.1| GENE 13 14269 - 15693 1622 474 aa, chain - ## HITS:1 COG:no KEGG:EF3011 NR:ns ## KEGG: EF3011 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 474 1 474 474 960 99.0 0 MSRNDLFKQPLDTINVGIDFIHEDMKKQGIPSHQVNWAPPANGDPELLKLLDQLKNPTLY EKIQQANEEAVTRIIQSKPILVGFDKAINVMPDMTETTILHAGPPITYENMCGPMKGAVQ GALVFEGLAKDLADADRVARSGAITFSPCHEHDAVGSMAGVTSPNMYVHIIKNETYGNTA FTNLSEQLAKVLRFGANDQSVVDRLIWMRDVLGPLLHDAMTFCPEGIDLRLMLSQALHMG DECHNRNVAGSTLLVQALTPYMVQTDFSREQLKEVFEFLGSSDYFSGPTWMGAAKCALDA GHNVENSTIVTTMCRNGVEFGIRVSGIGGNHWFTGPAQRVIGPMFAGYTQEDAGLDMGDS AITETYGVGGFAMAAAPAIVPLVGGTVAEALNYSKEMLEITTKENPNVTIPVLDFMGIPS GIDVLKVLETGMLPVINTAIAHKEPGIGMIGAGLTNPPANVFNEALKALVAKIN >gi|307679242|gb|GL457005.1| GENE 14 15680 - 17227 1954 515 aa, chain - ## HITS:1 COG:ECs0369 KEGG:ns NR:ns ## COG: ECs0369 COG0074 # Protein_GI_number: 15829623 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, alpha subunit # Organism: Escherichia coli O157:H7 # 1 511 1 514 515 507 51.0 1e-143 MTIQTVIKENAYFDSVTLMTISTRANELAGVKTAMIGMGTDMNLEVIRNVGLYTPALDHV TTGDLLIVLDLDDQANSEEILQQVDELFTKKKKTASSEVTYKTLDSALYEEPDANLVVIS VNGKFAAREAHKALDQQKHVMLFSDNVTVDEELALKQKAHEKELFVMGPDCGTAIINGVG LCFANEVRSGDIGIVGASGTGSQEVSVQIHKYGYGISQLIGTGGRDLSAEIGGLMMLDGL DALMADEQTKAILLISKPPAPEVTEKILKKLAVSTKPVVIYFIGSEQTERKIDNVTFATS SLDAVQKVIQFSQTQEAEPSLYQNPTGATLTAIQQQQTPSQKFVRGLFCGGTLCDELLYA LTEVSDDVYSNIHKIPERQLANPDHSQAHTLIDFGDDRFTEGRPHPMIDPTSRITRILQE AKDPEVAVLALDFELGYGSHENPVGVLEEALKEAKADGRELAIIGYVLGTEEDPQDIHEQ RKILEDLEVLVVDSSHQLCEATKTFVKGANEHEQK >gi|307679242|gb|GL457005.1| GENE 15 17205 - 18071 513 288 aa, chain - ## HITS:1 COG:no KEGG:EF3009 NR:ns ## KEGG: EF3009 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 288 1 288 288 557 100.0 1e-157 MTKILAYDQTILSKLPHQTLTSLQCFTHAINYGHVDTQEILLTISTHPEHIAPNTIILDE KKLSHFADLPVQIEPLFIRLGRRQLTLADAQIWQPTPLYLTPSKTKIAIFLTYIQQTRFN PWQALFPASSSTFLFDSYSRTQIQKEMIHFQQAWEQKSFKIALDCLTKILGLGIGLTPTG DDFITGLLASFSALQQLPSNFQQLAVLAKERTNAVSYAEIHEAVNERFSQLVQRVFLSIE SGNTNEMAQAVSALEEVGSTSGSDILCGIIFGLKLFCEENNHDNSNSN >gi|307679242|gb|GL457005.1| GENE 16 18202 - 19872 1246 556 aa, chain + ## HITS:1 COG:BS_yunI KEGG:ns NR:ns ## COG: BS_yunI COG2508 # Protein_GI_number: 16080295 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Bacillus subtilis # 2 550 1 527 531 122 23.0 2e-27 MLKVSDLLTLEELPGITLVAGHKNQDQPILKVNILENPDILDWLTAGELLLTTGYIFKDD RKLQKNFLKELAKHHCAALGFKTQRYFEEVPPDLIKLADEMNVPILAIPYNYTFSQIADV LKSRVTLEQFDMNAQETALHNKIYQILETGSSSFHLLQDLAETIQNPVLLLNDHFEGVNF FDLPKNPIRISSILEDRQETSEFQKQLLEQSHPSLRFYQEPIHLQLKLQNQVVPIEIYPI KKKNVILYYLLVWNTLAPLRPVDVAHFKITAHYLLLQLQLEYSRKFEEYQQRNELFFKLI AHEKRDQAVFQQFQQYYRLAIDKPYAILLISLTLNERQRQERMSILGNQLNQVILGDKQK IVCIEIDSSFVLLVENPPEKEGDYLKMMQRLAQSSINQLMKVQEDVELFLTIGPKIQGLT QIHESYQQAIDVLAFQRQFVAEKPEMRIASYANFHLRQTLQRYFLAEGQATLRKKYLQPL LKSDQQQHTDFVHTLNVYFQSKRNLSQTAKKLFIHRNTLLQRLEKIEQLVLLDFDKEVDL LALEVALFLKDKRSTL >gi|307679242|gb|GL457005.1| GENE 17 19906 - 20811 957 301 aa, chain + ## HITS:1 COG:no KEGG:SPCG_0521 NR:ns ## KEGG: SPCG_0521 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_CGSP14 # Pathway: not_defined # 1 254 13 268 271 254 49.0 3e-66 MEEEVLALKVVNESLKLPGVKVNRNAFLTKMFQDKVDNVQELFDDGPEKVLSKKELDRAA QKCINQAVMQSSAISFATGIPGGLAMAATIPADIAQFYGYSLKLAQEISYIYGYHDLWNN QDELTEEAKNTLILYLGIMLGVTSAGSVVRILSKRLSIQAVKKIPQKALMKTFYYPILKK ILAVFGTKLTKATFAKGVSKAIPVLGGVVSGGINYASMKPMAMRLKDELSKNIGYTQEDA EKDLEILEADFEVISEQPETETTKHADDIFSKLERAHALFEKKILTEAEYIKLKETIIQE G >gi|307679242|gb|GL457005.1| GENE 18 20985 - 23972 3095 995 aa, chain + ## HITS:1 COG:lin0521 KEGG:ns NR:ns ## COG: lin0521 COG0610 # Protein_GI_number: 16799596 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Listeria innocua # 1 995 1 995 995 1642 83.0 0 MAEAKFEEALIKKLESEGWTYRKDLSNVSIKKLEQHWHDVLNETNAHKLNGTPLSDNEFK MILQELQRIRTPYDAQLLLVGAGGVGSIPLVRDDGSSLEIEIFYSDDVAGGRSRYEVVSQ VMFNNLPKGLTSKRIIDLALLINGIPVAHIEEKDEHLQNQWHAFEQLKGYHGDGLYEGLF AFVQVQFILSQHSAHYFARPNAFEHYNKTFVFGWRDERNKDITDAFEFAHQVMGIPALHR LVTVNMIPDASNDNLMVMRSYQIQATRGILQRMKEMESSGLIEKEGGYIWHTTGSGKTVT SFKVAQLLASAPRVRNVLFIVDRVDLIDQTLENFKDFAYMHFKKRIKKVNGRELKRELKH KGASQILLISVQGLTKAVKNGLTNDEWNVIIMDEAHRSASGESVQLIKKAFKKTTWFGFT GTPNFYSDEINDVTTSRDISTHDIFGKRLHTYTIKDAIGDGNVLGFDVTYFKPHWVVENA ESDFSEQEYEKEVYQSDVYRRQVVQDILDNWKKTSSGPLIGGIRKENTFQAMLAVSGKQA VVHYYNIFKEKAPHLNVTMTFSTDESNKNGTKEQNEALKKAIKAYTEKFNVPSILSAKDP ARAYMIDITKRLARKKPYNQGKEEERLDLVIVSDQLLTGFDSKFINMIYMDKMLKEGMLI QAMSRTNRTLNRDSKPHGKVRFYRQGDAMKEYVENALRIYTRGGNDTLQEAEEEAGNQEL KDLENDDILAKPQSHQIQELEGTIARLKELAGDDFSQVPRGTNDIREFVNLAFPAQSKIQ QLIQQGYELGTEIDVLDDNNEPTGEMIRLDIANTDEFGALQARLYDTKEKLPESERPDLT EIKIGIEFFDHEIIDYDMLVELLNNFMDEKTEHNREAIDKHITPMDDESRQEINEIVDDI ESGEITEHFTTETLQQERKKRRTNLRELKIRRWAADQDVNGNRVVEAFDLFLPGHTLIDN PNLADLVREIEKEENIDFFGAAEFEEALMKFFNSL >gi|307679242|gb|GL457005.1| GENE 19 23995 - 25587 1687 530 aa, chain + ## HITS:1 COG:lin0522 KEGG:ns NR:ns ## COG: lin0522 COG0286 # Protein_GI_number: 16799597 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Listeria innocua # 1 528 1 528 529 931 85.0 0 MALSQEQQTKMWAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATRWLDDVTRGETWENI YAQNPSKALEYMQKNLGYAIQPNDFFDDWKKAIDEDRFNIGMMTDTFGHFNQQIAFEAKG DFEGIFDGMRFDSADLGANAQARASVMISMIELLSSPEFDLSGSDDTVSDIYEYLVAQFA TVLASDMGQYYTPKEISNVMARILTSGREEEESFSIYDPTVGSGSLLLTTASYMKNSHKR GMIKYFGQEKDATPYRLSRMNLMMHGVEYNDISINHADTLESDWPDGVVDGKDNPRMFDA VMANPPYSAHWNNKDREDDPRWREYGIAPKTKADYAFLLHCLYHLEDNGRMAIILPHGVL FRGAAEGRIRKALIDKHQIETVIGFPDKLFLNTSIPVCVLILRKNRTASDILFVDASREF EKLKKQNHLRPEDVDKIVDTVVQRKEIEKYSHLATLDEIKENDYNLNIPRYVDTYEEEPP VDLVALNNDIKNTNEEIKKVEAELLAMLDDLVVTEETQALIDATKEVFGG >gi|307679242|gb|GL457005.1| GENE 20 25596 - 26807 772 403 aa, chain + ## HITS:1 COG:SPy1905 KEGG:ns NR:ns ## COG: SPy1905 COG0732 # Protein_GI_number: 15675718 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Streptococcus pyogenes M1 GAS # 218 402 7 191 399 229 59.0 1e-59 MKKVPRLRFRGFSEDWELCKLSGVIEKLSGGASIKPTDYLEDGIRTIPKGAVNATGIADL SGSKYISEDFFEKNITSHVHTNNLVTSLRDLVPSAPNMGRIVRIEGDEEQFLMPQGVYKL ELFEGMDGDFLISFSNSDKYRKIISAEKNGSTQVHIRNGEFLNIDINLPSKYEQKKIGAF FKQLDDTITLHQRKLDQLKELKKAYLQLMFPKKDETVPRVRFADFEDDWQLCKLGETFSI IMGQSPNSENYTENPDDYILVQGNSDMKNNKVVPRIWTTQVTKKAEKGDLILSVRAPVGE IGKTDYNVVLGRGVAAVKGNDFIFQQLRKMKDSGYWTRYSTGSTFESINSNDIKEALINI PNKDEQQKIGDLFTHLDDAIILNQNKLNQLKSLKKSYLQNMFI >gi|307679242|gb|GL457005.1| GENE 21 26891 - 27820 713 309 aa, chain + ## HITS:1 COG:lin0524 KEGG:ns NR:ns ## COG: lin0524 COG0582 # Protein_GI_number: 16799599 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Listeria innocua # 1 309 1 309 309 489 80.0 1e-138 MVKRKRTEQLFHEYFSEWVELYKVGAIRDISLQKYYIAEQRLAELAPGLKVKHLDRQRYQ QLLNDYALTHERQTTMDFHHQLKGAILDAVDEGLISKNPTRKIVIKGKAPRPKKSKFLNQ FEVQALLKELELGERLNWDWFILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKN PTGFFQSTKNESSKRKVQIDWQTAMQFSQLIRNMPPMEPIFVRGRVFNSTINSRLKVLCK RAQIPVITVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQETYLHIIQELENQDNDK IMRHLAMLM >gi|307679242|gb|GL457005.1| GENE 22 27858 - 29027 460 389 aa, chain - ## HITS:1 COG:SPy1905 KEGG:ns NR:ns ## COG: SPy1905 COG0732 # Protein_GI_number: 15675718 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Streptococcus pyogenes M1 GAS # 118 389 128 399 399 275 50.0 1e-73 MGDTFTGLTGKTKEDFGHGDATFVTYINVFSNPITDLKMTESVEIDAKQNQVEYGDIFFT TSSETPEEVGMSSVWLGNEANVYLNSFCFGYRPVTELAPYYMAFMLRSPNVRKKFIFLAQ GISRYNISKNRVMDIEIPVPNIDEQRKVGQFFKDIDDLITLHQRKLEQLKELKKTYLQVM FPRKDERVPKLRFADFEGEWAQRKLGEISTHRSGTAIERYFTEDGKYKVISIGSYGTDSK YVDQGIRAISNEITNARVVHKGELTMVLNDKTSDGAIIGRSLLIESEEEYVINQRTEIIS PKDDFNVNFAYTTLNNTFRQKVKKIVQGGTQIYVNYPAVKNLMLDFPSYKEQTKIGTFFK QFDDTITLHQNKLDQLKTLKKTYLQNMFI >gi|307679242|gb|GL457005.1| GENE 23 29236 - 30429 715 397 aa, chain + ## HITS:1 COG:no KEGG:EF3007 NR:ns ## KEGG: EF3007 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 41 397 1 357 357 613 97.0 1e-174 MWTIIVSGLFLSSIIAGISGAFLIIEGELTTLLWEVLPAQMKWPILYYFVLCVLGALVLS YLKKRFGQIPQTAHEALTELKAKQSVDYSGVFRNLLAALVILIFGAGVGPEAALLGAIIS LSVWQSDKLRYLYFHYDEQEQQTFWTKIQRLLHPQQFVQRYDTMLAPVDKKKLKQVMNGL FIVNGLVVFTFLMKLVGQPSFITKLGTGKVEMASLWLILPALLTAFVIGNAYQWLQAALA KICQPFEEKQNILVSLGAACIFLFVILMPRLLFSGQSFMHLVPSFGSQQAWYILVIAAIM KLVFLQVCLQTGWIGGDIFPVVFSAILIGFAVAQFFPTIDSLFVVAIFATSLTTQILGTI LVPGIFVGLFFPITLWPVVVLVLFLQWLLKNKIIKSN >gi|307679242|gb|GL457005.1| GENE 24 30476 - 31228 736 250 aa, chain - ## HITS:1 COG:no KEGG:EF2225 NR:ns ## KEGG: EF2225 # Name: not_defined # Def: MerR family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 7 247 5 250 255 85 24.0 2e-15 MNQDHLYSLETIASLLKIPKSTLRYWEKERLIHSVRGDTNDYRQYTTEQLIAICEIKFYR DLNFSIKEIKNLYTNPLSDTQKLLENARQDLEERITQLKQIHRNLITYQQKYEEVSQLQE EVLKEEIPPFKTLYYFHPAKAENLLLYLNDPSILGFVLSPDEQTIEHFSTTNKDSAAFPL ALHWEFDASKSYYSQLIRIEESSNQLQPQQIQKNLIYLKEQGYQVHQLLGRYLLSKKHQD YYQLWFECSN >gi|307679242|gb|GL457005.1| GENE 25 31340 - 31804 538 154 aa, chain + ## HITS:1 COG:no KEGG:BCAH820_3046 NR:ns ## KEGG: BCAH820_3046 # Name: not_defined # Def: PTS system, IIC component # Organism: B.cereus_AH820 # Pathway: not_defined # 9 154 11 155 433 107 43.0 1e-22 MFDKFQRFLEKFIGPIAERMQKSKVIQALTNGMMAVLPVSLGVAFIAIVGNFPIPIWQEF LTSIGLAPIIQEVIAMTSDLYAVYIVCTIAYETAKMEKQNPITSVILSLAFFLILVPQFA VKLGGEETIVIKTASIGTDGIFVAILVGLGVTML >gi|307679242|gb|GL457005.1| GENE 26 31814 - 32641 857 275 aa, chain + ## HITS:1 COG:SPy2050 KEGG:ns NR:ns ## COG: SPy2050 COG1455 # Protein_GI_number: 15675820 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Streptococcus pyogenes M1 GAS # 8 265 165 429 434 132 30.0 5e-31 MKKEFLRIKLPDSVPTMVTDSLSPTFVAMIIFVVALLVKAIFTYTGSGDAMSFLTELVSK PIASLGQSPMTVIVVFTLANLLWFFGIHPSPIINIFFAVMAPVFLANINAFIAGQALPYP EIMFFSSIIMVGGTGNTIGLAFCMLRAKSERYKSLGKLGVVPSIFNINEPLIFGVPIMLN PIFFIPLVSSTAVGGLVLHLFYKVGFLNYYNPTVELPWVTPPVVAETFYGGIRFGLAMIA VVIALTLLYYPFFRMADERAVKEEQTLATGEQENE >gi|307679242|gb|GL457005.1| GENE 27 32634 - 34046 1474 470 aa, chain + ## HITS:1 COG:CAC1408 KEGG:ns NR:ns ## COG: CAC1408 COG2723 # Protein_GI_number: 15894687 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Clostridium acetobutylicum # 15 470 8 476 477 488 48.0 1e-137 MSSREKKQLSSMPNDFLWGGAISATQVEGAYNRDGKGLSNLDLALRCKKGEKRQITQQVD VNQYYPSHRAIGFYESYQKDIQLFADMGFKSLRFSIQWSRIFPTGEEERPNEVGLLFYEK ILDELERHRIEPIITISHFDLPENLVTKYGSWKNRQVITFYLRFCEALFQRFSDRVRYWI PFNEINVITYMPYFSTGIHTENYQEIFQMAHHQLVASAKAVQLGRKYSSNYRFATMLMYG PTYPHNCHPESVFQAMMDDEETYYFGDIQIRGYYSPWAKKMLEQLGVQLAITEEDEQDLR EGVVDFVSISYYMSWTTAPETAAGNMATGGKNPFLEQSEWGWQVDPLGLRISLNRLYQRY EKEIMIVENGLGAVDHCSENGEIYDDYRIDYLQQHLLAVKQAIVLDGVPVIGFTVWSAID SISASTGEIGKRYGLIYVDLDDEGQGTLARKKKASFYWYQKIIESNGAEL >gi|307679242|gb|GL457005.1| GENE 28 34095 - 34184 79 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNETTSLTHYLVRDVVCVFIDLNLLVVAR >gi|307679242|gb|GL457005.1| GENE 29 34150 - 35217 997 355 aa, chain - ## HITS:1 COG:BMEI0543 KEGG:ns NR:ns ## COG: BMEI0543 COG3049 # Protein_GI_number: 17986826 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Penicillin V acylase and related amidases # Organism: Brucella melitensis # 2 320 37 329 367 126 31.0 6e-29 MCTGIKIISKTNDIFYGRTMDFTFDFFGNEDPIAPKIPTLIAQFPKGTVLNSQLNPWTAK YAFMGLAMSGTDQPANDGKTVSLAITDGINEAGLSGDIQYLMESSTAPAESLADRGLTPH IAEEVLAYILSNFESVDEVKVAFEKIGLLDQKFQLDSLGEVHFTLHWTINDKNNNSIVLQ PTDNGAFVIYDSIGVVTNSPEYNYHLTNARNYIGMRNYAIKEPYTLKSGATLEPIEGGTS YGLLGIPGDFTSPSRFIRALYYSDNLQEFDSSEGIMQLYRAFQTVMIPRGIGHLGQSNSL SDFTHYWSGYDVTNLTMYVQPESTTSFTKYTLDPALTEVTTFAVSNELLLTDLNQ >gi|307679242|gb|GL457005.1| GENE 30 35436 - 37055 1744 539 aa, chain + ## HITS:1 COG:L1004 KEGG:ns NR:ns ## COG: L1004 COG0659 # Protein_GI_number: 15672032 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfate permease and related transporters (MFS superfamily) # Organism: Lactococcus lactis # 81 531 1 452 460 399 49.0 1e-111 MFKKYTQMIRDEFKGYNQKKLKKDFLAGLTVAAVALPLALAFGVSSGATAAAGMITAIIA GIVIGSLSGGFYQISGPTGAMAAILMSIAAVHGMQGILLATFLAGIFLLLAGILRLGSLT SFIPSPVITGFTSGIAIIIALGQLDNFFGVRSEGHNLIEKISSYRSLGFDLSISTTVMSI LVVLGLVFFPKKWNAMIPASLVMIILATLATVVFQLPVATVGKIPTSIFSDTRLELGSLQ LSAFQDILVPSISIAMLGMIESLLCGASAGRMTGKPLDSNQELVAQGIGNLILPFFGGVP ATAAIARTSVVIKSGAQTRLAGIFHAVFLLLSMLLLSPVMSKIPMPALAGVLVVTAWRMN EWSVIKEFFQKRFHTALCLFFLTMVATVIFDLSLAIVLGVLAGCLFFIAKSAVITINVEE VDWSRMGLVPTDCTENWVVVYLSGPLFFMSSERLKQTLLQLETKSGVVLSMRGVPSIDST ALDILEEFCLAAEGRGQQVQFAALQPEVEKMIRTIQGNQEKEYHFSVAEFLQTVHVAEQ >gi|307679242|gb|GL457005.1| GENE 31 37219 - 37911 638 230 aa, chain - ## HITS:1 COG:no KEGG:EF3003 NR:ns ## KEGG: EF3003 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 230 1 230 230 313 96.0 3e-84 MKKLFCVILVIFLTGCSSQKANEPKKQENSTNHTTSMKSSTNHYSSSTETSSNNKLKKTS ESASTAQASAKSKNEVSTNVEEANSLEATPYAVDLSSLNNPLVFNFKGMNVPTSITLENL NSTPTATFRTKLFGAENDQVKEAINKYELSINTIPTKEIRIFSAADNSIRTVKVNTELIL GTNISSNDEQNRSGTLYLFNNKNGSISLITPNYAGNVTDDQKDVMLEVIQ >gi|307679242|gb|GL457005.1| GENE 32 38104 - 38556 619 150 aa, chain + ## HITS:1 COG:BH3077 KEGG:ns NR:ns ## COG: BH3077 COG1846 # Protein_GI_number: 15615639 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 150 1 150 150 197 72.0 7e-51 MTDILREIGMIARALDSISNIEFKELSLTRGQYLYLVRVCENPGIIQEKIAELIKVDRTT AARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVE ISQLAEYLVRMRKNVSEDWEFVKKGNTRNY >gi|307679242|gb|GL457005.1| GENE 33 38575 - 39087 624 170 aa, chain + ## HITS:1 COG:BS_paiA KEGG:ns NR:ns ## COG: BS_paiA COG0454 # Protein_GI_number: 16080268 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 3 170 4 171 172 166 51.0 2e-41 MGEIKQLTIEDAPALQEISIETYTDTFGPYNTPENMQAYLVEAYNLEKLQKELANPYSDF YFIFVDNQLAGYMKLNRERAQTEPMGPEKLEVERLYILPAFKGKKLGTQLLELAEEKARE FGKKALWLGVWEHNDAARAFYKTIGYRYYSQHSFFMGDDEQTDFILLKEL >gi|307679242|gb|GL457005.1| GENE 34 39682 - 41178 1669 498 aa, chain + ## HITS:1 COG:ECs0572 KEGG:ns NR:ns ## COG: ECs0572 COG1953 # Protein_GI_number: 15829826 # Func_class: F Nucleotide transport and metabolism; H Coenzyme transport and metabolism # Function: Cytosine/uracil/thiamine/allantoin permeases # Organism: Escherichia coli O157:H7 # 11 473 3 462 463 447 54.0 1e-125 MEKNVSRVTAQEETAMKARGYNEDLLPSSPKQRTMGARNFFTLWMGSIHNIPNYAAVGGF IFLGLSPLQVMLAVVLSSFIVATFMNLNGVAGSKYGIPFAMHLQSTYGSLGAKLPGFLRG CVAAIAWFGLQTFTGSLALLIILGKFWPNFLEIGGSFQFFGLRLPELMAFTLFWLLNVAI GFGGSKILNRFTAILSPLIYVVIIGLTIWAIRAGGGLTPILSYQVSGAIRSVNPLVAYLI IFNSVVAVWSAPGASVADFTKNARSTRAQVVGQTAGLVVGYGIFAFSSVVILLGGSLYFG IQEWNILNIIDRLDNVAVVVLAMSVFLLTTISTNATGNIIPAGYQLAALFPKKMTYKKGV MIASVISFLIMPWKLMENADSIFIFLNAIGAVLGPVAGVMIANYYFVQKQQINLNALYVD KHKKEEANPFYGLNKPAYVATILALVLSLSGQFIPQVKIIADISWFVGFATGFVLYLVLK KWTWDSKKVKETAYQEGK >gi|307679242|gb|GL457005.1| GENE 35 41179 - 42543 1583 454 aa, chain + ## HITS:1 COG:ybbX KEGG:ns NR:ns ## COG: ybbX COG0044 # Protein_GI_number: 16128496 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Escherichia coli K12 # 1 452 1 448 453 510 54.0 1e-144 MQAELVIKNGLVILETGEVITDVAVQGGKIVAIGQDLSGERVIDATGLVVSPGMVDAHVH ITDPGGGYRDEWEGYVTGTAACAKGGVTTFMEMPLNQIPATVDKTSLEIKYKVGENKLKV DVGSFGGVVPTNLAGGIQELDEGGVSGYKCFLGTCGDRSIEGDFQNVDDYSLYEGMKQVA KTGKVLAIHAENAPITDKLGALAYQNGETTLAAYVATRPVFTEVEAIQKAILFAKETGCR IHICHVACQEGVEEVLKAQAEGVDVTCETCTHYLYFTTDELDAIGPVVKCSPPIRDADQQ AALWNHVQTGGIAFVTSDHSPCTPDLKDTTNAFEAWGGISGVQNNVDVLFDEAVQKRGLS LKQFADMIAANPADRYHLAQKGRISIGKDADFVLIKPNAPYILKAEDLEYRNKISPYIGR EIGAQVIQTILRGKTIYAQETGVTEAFNGVFIKN >gi|307679242|gb|GL457005.1| GENE 36 42725 - 43948 1327 407 aa, chain + ## HITS:1 COG:ECs0578 KEGG:ns NR:ns ## COG: ECs0578 COG0624 # Protein_GI_number: 15829832 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Escherichia coli O157:H7 # 7 407 5 410 411 507 59.0 1e-143 MDLEKVLKQRIEELSAIGSDPEGGMTRLLYTDSWLAAQKYVQSQTEAFGLETQFDEVGNL FCRVAGTEFPQETILTGSHIDTVVNGGTLDGQYGVIASMTAVQYLLDKYGKPRRSLEVLS MAEEEGSRFPTVFWGSKNVVGEAKCEEVVDISDNEGKKFVDEMHRQGFDFRQEQTRREDI EAFVEIHIEQGNILENEKLQVGVVHSIVGQRRYTVNLKGQANHAGTTPMSYRHDAVYGFA KICAEAIDRANEIGDPLVLTFGKVIPKPNTVNVVPGEVEFTIDCRHTDAAFLRHFTGELE ERMKTIAQELGLTIAIDRWMDEAPVPMNQAIVEVIEQKAKEGKYQYRMMHSGAGHDSQII APHYPTAMIFVPSIGGISHNPAEATAFPDLVEGVKLLADTLYELAYK >gi|307679242|gb|GL457005.1| GENE 37 43970 - 44755 1036 261 aa, chain + ## HITS:1 COG:STM0526 KEGG:ns NR:ns ## COG: STM0526 COG3257 # Protein_GI_number: 16763906 # Func_class: R General function prediction only # Function: Uncharacterized protein, possibly involved in glyoxylate utilization # Organism: Salmonella typhimurium LT2 # 1 258 1 258 261 296 58.0 3e-80 MGYKNNRVGYQKELLTSRAVIKKDNYAIIPHDGLVQNAVPGFENVDISILGSPKLGATFV DYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSDGQETHELEAGGYAYFTPEMKMYLA NAQEADTEVFLYKKRYQPLAGHQPYKVVGSIHDQQPEEYEGMTDVLLWSLLPKEFDFDMN MHILSFEPGASHAYIETHVQEHGAYLISGQGMYNLDNEWYPVEKGDYIFMSAYVPQAAYA VGREEPLMYVYSKDANREPEL >gi|307679242|gb|GL457005.1| GENE 38 44873 - 46498 1421 541 aa, chain - ## HITS:1 COG:BS_yunI KEGG:ns NR:ns ## COG: BS_yunI COG2508 # Protein_GI_number: 16080295 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Bacillus subtilis # 1 538 1 526 531 179 24.0 1e-44 MKILAEVLALPRFSDLQLLSSHSNLTQPLESVEITETPDVADFIPKNVMILTTAMIYKDD QEKLKPFIDSLKQAECTALGIKVGRFLDEISPEIVAYASAVDLPLIKIPSTQPLGGLLHE IVGYLRDSKTEQMSVAFDIQKRFSTLLMQDVDATRFIAEFAKILNAPIILLSPWQQVIAH SNYFYGNQKSAEFFIEQLSKDHFQQLAQEKKIFRLQDERQENIQVAGFPIRVNDYFPYYL LVLSPEQIPYPISEFAIDQAILVLTFMLFKNQKIAESFEHLKTDFLDRLLDTHQEALSKH QNWLELWKNYRLINSDYYQLAIVYGVTKPENETHIRYQQAEGQLIFQWLKEQLPEILPDV ALFKLKNQNKSILIFQSKKNDHLMILQNLAERLQQALPITIRFALGNAYENLEDLPNSYI EASSTLEASLHAQKPATVQLFHPKGLAGLFEKIGTEDVEYFCQQQLKELAYPTEPTLQEL RKTLKVFLDFNCEITKTANALYLHRNTIKYRMNQCEKLLDTSIQEPETSLLLRVALELSG K >gi|307679242|gb|GL457005.1| GENE 39 46670 - 47878 1356 402 aa, chain + ## HITS:1 COG:BS_yurG KEGG:ns NR:ns ## COG: BS_yurG COG0075 # Protein_GI_number: 16080305 # Func_class: E Amino acid transport and metabolism # Function: Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase # Organism: Bacillus subtilis # 10 402 12 409 416 435 54.0 1e-122 MYQQPNFVRRTIMTPGPVEAHPSVLRQMGQPILGQFDPEFLQIMDEVREMIKVPFATKNQ QAFAIDGTSRSGLEAGLFALIEPGDKVLVPAYGRFAYLLGEICERARAEVIYLEKDWLAP FEQTTVIEAIKEHQPKIVAMVHGETANAQMQPLDQIGAFCRENEIFFVVDMVATYGGVET KVDDWKIDIAVAGTQKCVSVPSGLSLITYNQRVADYLAGRYQKELGLGADARNERFIQSN YLDLSQLEKYWGPERLNHHTEATTMIYGLHEGLRLLLQEGMENVYARHRKNDRILVESLQ KMGLEIFGKLDTKTPTVIPVVIPEGIDGEKVRSLLLDHFKVEIASSFGDLKGKIWRVGNM GYSSREDNVLHFLSAFETVLKHQGYQFEGGSGSTHALAEYLN >gi|307679242|gb|GL457005.1| GENE 40 47976 - 48437 604 153 aa, chain + ## HITS:1 COG:STM0520 KEGG:ns NR:ns ## COG: STM0520 COG0477 # Protein_GI_number: 16763900 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 150 1 149 415 165 54.0 3e-41 MTDKTKSSLAYWKKIVILLCMGWVTIWIYRSALSPVYPQIRASLNGNASDTALGSISSFY FLGYVVMQIPAGFLVDKIGKKRVLIPGFILFALAALLIAQARTIGTIYLGSLLAGLGCGS FYGSAYSLTSQNIPQAKKSFATAIVNSGSANRC >gi|307679242|gb|GL457005.1| GENE 41 48406 - 49071 684 221 aa, chain + ## HITS:1 COG:STM0520 KEGG:ns NR:ns ## COG: STM0520 COG0477 # Protein_GI_number: 16763900 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 12 216 204 408 415 192 50.0 6e-49 MSTVVQPTVVDEKDNGAVKEKVPFKKLFAPHMLFAYILYFGTCYAYYMIVTWLPNFLSTE RGFQGAAIGLSSSLVAFASIPGALFFSRLADKYMHKKVQFIVVLEFLATAMLLLTVQVSN ATLLLIALIMYGFLGKLAVEPIIISWLGENAPKIGIGTTLGVFNFFGMMSSVIAPALTGK ISDTTGSKVMGFYIAVVILLIGTILFMLVNLKKRGADSSNK >gi|307679242|gb|GL457005.1| GENE 42 49117 - 49377 389 86 aa, chain - ## HITS:1 COG:SA0045 KEGG:ns NR:ns ## COG: SA0045 COG1937 # Protein_GI_number: 15925752 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 6 85 5 84 86 67 46.0 5e-12 MTEEKKKVLNRLRRTEGQIRGIQKMIDEEKECIDVITQLSAVRSSIDRVMGMIVAENLKH CFENPEKDPKEQEERLAQAINMIVKK >gi|307679242|gb|GL457005.1| GENE 43 49546 - 49860 427 104 aa, chain + ## HITS:1 COG:L193718 KEGG:ns NR:ns ## COG: L193718 COG0607 # Protein_GI_number: 15672767 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Lactococcus lactis # 2 101 1 101 102 93 51.0 9e-20 MLFQLFKKTPSISTKELQSRLSKEITLLDVRTPSEYRAGHIPQAINVPLNKIPAYNKSAN EVYVICQSGMRSKNAAKILARKNYHVINVRGGMSQWFGQIKGGK >gi|307679242|gb|GL457005.1| GENE 44 49861 - 51510 2316 549 aa, chain + ## HITS:1 COG:L194050_1 KEGG:ns NR:ns ## COG: L194050_1 COG0446 # Protein_GI_number: 15672768 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Lactococcus lactis # 2 456 4 456 456 586 66.0 1e-167 MKIVIIGGVAGGMSAATRLRRLMEDTEIVVMEKGPFVSFANCGLPYYVSGEIAEREQLLV QTPEALKARFNLDVRPHHEVVAIDPIEKVITVKHETEILTEHYDKLILSPGAKPFVPPIT GLAEAKNVFSLRNVPDLDQIMTALTPETKRAVVIGAGFIGLEMAENLQKRGLEVTLVEKA PHVLPPLDEEMAAFVKAELSKNNVQVITGQSAVAFEEEGQVIRLEDGQTLASDLTILSVG VQPENTLAVEAGVATGLRGGIVVDEHYQTNQPDIYAVGDAIVVKQQITQEDALISLASPA NRQGRQVADVIAGLERKNQGSIGTAIVRVFDLTAASTGLSERAAKAAGLTTAVVHISGKD HAGYYPGATDLQLKLVFHPTTGEIYGAQGIGAKGVDKRIDILATAIKGQLTIFDLPELEF TYAPPFGSAKDPVNMLGYAAMNLAEGLSENVQWYELSNELAKGAVLLDVRNPAERANGQF KNAVSIPLNELRERLEELDKSTEYIVSCHSGLRSYIAERMLKQAGISAKNLDGAFALYRM VKPEELENV >gi|307679242|gb|GL457005.1| GENE 45 51503 - 51802 453 99 aa, chain + ## HITS:1 COG:lin0618 KEGG:ns NR:ns ## COG: lin0618 COG0607 # Protein_GI_number: 16799693 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Listeria innocua # 1 99 1 99 99 89 41.0 2e-18 MYNTIGMPEFYQEAKRKKLPIIDVREEMEYQLGHVPQAINLPLSTLTENYQQLDKNQPYY LICQMGSRSAQACAFLSQQGYQVTNVLGGTSGWLGQLEQ >gi|307679242|gb|GL457005.1| GENE 46 51974 - 53140 1581 388 aa, chain + ## HITS:1 COG:BS_yknX KEGG:ns NR:ns ## COG: BS_yknX COG0845 # Protein_GI_number: 16078499 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Bacillus subtilis # 11 383 2 376 377 89 27.0 1e-17 MKKSGQKKRNKKVWFGIGAAVVVVGFIGAKTVFSSKEVEPEYTTYTITEMASLKLDGQVS FLDTRDIFFDPSLGKIAEINVENGKEVKKDSPLLTYNNSDIQATETEQANAVNRNNLQVQ QAQENVNLATQKYNEALNKVAAAKQKLNTAKEAEEKETLNAEIQQLNEAVSAANSEVAQA NQALQLVNSDAVGAANTLEQTRGKVNTVVTAPIDGQVTVDASAMSSTDKPVIKIATQKKN IQGKVTEYDYDKLQTGEEVTVTTVGSGKSAPGKIVSIAQTPIAKNEGNPVVSYQFTVEGD FPWAEGLSTSIAVPQKQMIIPTAAIQKEGQKEFVYVYKAGKAKKTPIETETNLGRKVVKS GLNWKDQVIANPNKELKDNQDVQVAAND >gi|307679242|gb|GL457005.1| GENE 47 53133 - 53807 352 224 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 221 1 220 245 140 36 2e-32 MIKLAHIHKYYYSEEETLHVLDDINLQVDAGEFLAIMGPSGSGKSTLINLLGFIDKKFEG TYLFEDREIGDFSDKELSRIRNEAVGFVFQNFSLIETLTVEENIELPLLYSGLTPKEAKD RVHEVLTKVGLPDKGKKHPKQLSGGQQQRVAIARAIVNRPSFIIADEPTGALDSKTSEEI LTLFQQLNNEGVTIILVTHDEETIEYCNRLIKVRDGKILEEVLT >gi|307679242|gb|GL457005.1| GENE 48 53804 - 55012 1407 402 aa, chain + ## HITS:1 COG:SA0193 KEGG:ns NR:ns ## COG: SA0193 COG0577 # Protein_GI_number: 15925903 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Staphylococcus aureus N315 # 6 402 7 392 392 186 34.0 7e-47 MKRSIIWKTAFRSILKNKRRSLLTMLGIVIGIASVITIVAIGNGFKEDMVDKLSAEKQKE NVKKISFSAYNTSDMFSDQAMFTDNDLGVVRMVPGVEKIDFDQREVDGAQKGTLNFQAGP KNLSVTYELANKTTKELLAGRPLKDGDNAKMDKTVVVDELVAKELYQDPTAAVNRTFPYK EQLFTIVGVTTNTSGAIGPGNDDSLLYFPKKTYEHYFGKLKDTSTLKLTVAPGYQPDQVL KETIKTLSQQGTMKNSGTYQEYNVKDTIKEMGSLLNNLTLFISAIAAISLVIAGVGVMNM MYISVSERVKEIGIRRALGGTASDIKKQFLTEGIALTLIGGITGYLLGMIIAYLASMALP FSVRPDLMTVSLAIGISVFIGVVFSYFPASAASKKDLIDIMK >gi|307679242|gb|GL457005.1| GENE 49 55393 - 56058 592 221 aa, chain + ## HITS:1 COG:no KEGG:EF2984 NR:ns ## KEGG: EF2984 # Name: not_defined # Def: transcriptional regulator, putative # Organism: E.faecalis # Pathway: not_defined # 1 221 1 221 221 405 99.0 1e-112 MKIMVITKNILSETAFQNRLQHLDHQVFCTTCLIGEIKESHLFYRKFDAIILSETIPRKE QYLYLKELARVKTPLFLRSEDIPTSEELSISYQYGILNWLRLDATLDTLRENLLLAELNK PIQREDEKLDVEGIKLTAAERALLAVLYSTPKEHLPMERLCKLIYDTEETANNQKKMTKQ LTKLNKKIQVGGFKKQGIQNTRYKGYKLHPQLLPYIGELFT >gi|307679242|gb|GL457005.1| GENE 50 56155 - 57603 1650 482 aa, chain + ## HITS:1 COG:L169390 KEGG:ns NR:ns ## COG: L169390 COG0154 # Protein_GI_number: 15672148 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases # Organism: Lactococcus lactis # 1 482 4 499 499 378 44.0 1e-104 MKDGLYWVQQLKEQKVSHTELLKDIEKKVQKLNPKINGFVTFDSQKAEATYQKNKQQDTL FAGLPFPLKMLGQEKAGWSATAGSQLFKNSTATTTSNFVKQAETIGLMPLGQTNAPEFGF KNITDPALYGPARNPWNLEHSPGGSSGGAAAVVASGIVPIAGASDGGGSIRIPASFSGLI GLKPSRGSMPVGPEGWRGWQGASIDFALTISMRDTKALFYGLRGSHSGAPYQAPLAEWQT HPKKQRLKIALCTASPIGSMISPEATQAAKQAADFLAAAGHEIIEIPYPVDGAALIRSYY QMNGAETTAMMNSIQQGLGRPIRKEEIESFSWTMHQFGQKIPAATYVHSLQLWDQAAVTM EELFQKFDLFLSPTTAFSAPKINEDLQSEHIRQRMAQAAELTEAELAELIYDYFDKSLQL TPYTQLANLTGQPAISLPTHVTATGLPLGIQLLAARGREDLLFQVGEQFEQEGKFKLPES YR >gi|307679242|gb|GL457005.1| GENE 51 57669 - 58196 568 175 aa, chain + ## HITS:1 COG:YPO0455 KEGG:ns NR:ns ## COG: YPO0455 COG0406 # Protein_GI_number: 16120784 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Yersinia pestis # 2 130 4 137 215 96 38.0 2e-20 MLYVVRHGETDYNVARRICGHAEAQLTEKGYQQAELVAEKIAKQGIQIDRLLASPLKRAQ ETARKIAERNQLTIETEPRLIEMNFGIYDGEPIETTAFQENRSEISLPFPEGESVLDVAG RIYPLIEEALASEETYLFVCHNAVMRVIDNYFNGKKIQDFLDFHCENTQLVQYGE >gi|307679242|gb|GL457005.1| GENE 52 58317 - 61130 2054 937 aa, chain + ## HITS:1 COG:STM3773_1 KEGG:ns NR:ns ## COG: STM3773_1 COG1221 # Protein_GI_number: 16767057 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Salmonella typhimurium LT2 # 28 462 30 458 460 288 36.0 3e-77 MRIDNIHQALKQFHVQNPSSKETLLPATASQLSQASGYTRTAVSEELSELVRKDQVVKVK SRPVLFFDKDYLEEQFPFFKSSTCYDSLASLQEDIYQQTEQIHKKKQLLKMNPFANVIGF DGSLADAIKKLKAAILYPPNGLNILLTGESGVGKTLIAEQLHQFYQVKMNQEVPFIYFNC AEYFNNPELLTSHLFGYKKGSFTGAVNDQKGLVELADGGFLFLDEVHRLTSEGQEKLFTV LDKGYFTRMGEAEKQRNVSIKFIFATTEAVNQHFLKTFLRRIPVTLAIPALAERSLKEKI QLILSFFLEESQRIQKNIHIRYEALKQLTFTHFEANVGELKAAIQFMSAQAYLEVFDQLT ETICIEANEGTVKEQPDVESLLAFNEWIPNDGLTIQYNHFYLSSQELLKSESLKNDRFYN FLLKEYADLKKLTLSTEDALAIMQNKVEQLYDMDIFAQEPLAIEAIDETLQPKIQEAIVF FEQLIQEKLTEDFQNILIVHLYSAVFYSAQMNETFYSDTKNIYSGKVTQYQAAKTMVDFL QTLFGISFADTEILFFDLFIRKVTAKKRAHSVEENCGVIVVAHGTATASSMVEYTNLLFS TTVMRAVDMPINQSVEETLEKVRAIVKQNQYKKIILMVDIGSLVYFGNAISQTFQMEVLL ISNINLLTLLEVAREVIYESTAFEYLLPVLKEKNHRALICSKGRFNEAKVLIISCLTGMG TAIKIEQLLLKTFPNELLTNVRIITLEKREVEDIDRLHSFVRKEEKIVGIIGTVKTEVPD IPFISLQDLLSKRGIQLVFELLGHHLEEKQNQELLKKVSAKYIQGLSIEAITDLLTVLNP TTISIELAKIYSDICLQTKIKSDEKILLRFIIHCACMLERQLLNPEYDPTAYEVSYRELP EAVSVIKMAFRPLEVSYNLLIPPLEVRYIYELLFEKA >gi|307679242|gb|GL457005.1| GENE 53 61202 - 61603 442 133 aa, chain + ## HITS:1 COG:STM3772 KEGG:ns NR:ns ## COG: STM3772 COG2893 # Protein_GI_number: 16767056 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Salmonella typhimurium LT2 # 6 105 10 107 141 86 48.0 1e-17 MENEPILLLTHNGWGLELVKSVQMIVGEVTNVHEVALQAEDSLGDYLERVTETIDQLTWH NQLLILTDVKGGTPSNVALRLSKDYDLLIVSGLCTSLLLESVMKQSGPGFRLQDAEMIQQ AAVDSCQILEIPK >gi|307679242|gb|GL457005.1| GENE 54 61623 - 62117 629 164 aa, chain + ## HITS:1 COG:STM3771 KEGG:ns NR:ns ## COG: STM3771 COG3444 # Protein_GI_number: 16767055 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Salmonella typhimurium LT2 # 1 161 1 161 161 167 50.0 1e-41 MSKIVLTRVDSRLIHGQVVTKWLQQSGANEILVVSDELEQDEFLQSIYLMAAPPGVSVVI KGIESAKEYWESQEKEEKKVLFLVPDLTTLKAMVDQEIIKEEIQVGGLGGGPNRKNVLKN INLSEEDVAILTELLTKGIHVFFQAIPEENPLPIQKLIEKYQSL >gi|307679242|gb|GL457005.1| GENE 55 62141 - 62890 1001 249 aa, chain + ## HITS:1 COG:STM3770 KEGG:ns NR:ns ## COG: STM3770 COG3715 # Protein_GI_number: 16767054 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Salmonella typhimurium LT2 # 1 249 1 249 249 291 63.0 1e-78 MGVLGVSIIMGLYYWFARLRFGYTFSGMLSQPLGAALVAGLATGKLSEAMVVGAGIQLVY LGVTSTPGGNVPSDPALASAIAIPIALGVGMNAEAAVALAVPFGVLGVFMDQLRRTINAT WVHMADKYAEELNYGGIYRAAFVYPALAGFLIRFPLVFAANFFGQSVVNKVLEVIPAWLM HGFEVMGGILPALGFALTIMVIGKKNLIPYFLIGFVAVVYFGAEVMAVAILGICIAFLVR NKALSEEAA >gi|307679242|gb|GL457005.1| GENE 56 62890 - 63741 1076 283 aa, chain + ## HITS:1 COG:STM3769 KEGG:ns NR:ns ## COG: STM3769 COG3716 # Protein_GI_number: 16767053 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Salmonella typhimurium LT2 # 9 283 13 286 286 321 62.0 1e-87 MEQMTQANEQQLEQKKITKKELSKAFWIYQLGCELSNSYERLQSLVFCASMIPAIKKLYA DDEEQQREALKRHLNFFNTEGTVGASIQGIAIAMEEEKSNGAAISDTAITSIKTGLMGPL AGIGDSIIWAALMPLIISIFIPMAKGGNVIGSIGPLVLYTAITLYISWTLVNKSYTLGRN SILSLLKDGKIKQVIYSANVLGMMMMGALSASYVKIASPMTFKVTGGATIVLQDILDQIM KGLLPLAAVMAIYFFMVKKGPRYGIIIGTIVLVSLVTSFFGLL >gi|307679242|gb|GL457005.1| GENE 57 63753 - 64095 273 114 aa, chain + ## HITS:1 COG:STM4446 KEGG:ns NR:ns ## COG: STM4446 COG1921 # Protein_GI_number: 16767692 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine synthase [seryl-tRNASer selenium transferase] # Organism: Salmonella typhimurium LT2 # 4 114 5 115 372 101 49.0 4e-22 MNSYEKFHLKEVINASGKMTILGVSKVSEAVLAAQRFGGEHFFEMSELSVQTGAFLANLL KVEDAQIVSSASAGIAQSVAALIGKGSLYHAYHPYTEKIEQREIILPKGHNVDY Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:21:58 2011 Seq name: gi|307679241|gb|GL457006.1| Enterococcus faecalis TX2141 genomic scaffold Scfld42, whole genome shotgun sequence Length of sequence - 5655 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 5, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 404 353 ## EF1412 hypothetical protein - Term 379 - 425 11.2 2 2 Tu 1 . - CDS 430 - 1824 1590 ## COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases - Prom 1862 - 1921 7.4 + Prom 1798 - 1857 8.2 3 3 Tu 1 . + CDS 1966 - 2964 1058 ## COG1609 Transcriptional regulators - Term 2928 - 2980 14.2 4 4 Op 1 9/0.000 - CDS 3000 - 4262 1107 ## COG1668 ABC-type Na+ efflux pump, permease component 5 4 Op 2 . - CDS 4255 - 5154 276 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein - Prom 5194 - 5253 6.0 6 5 Tu 1 . - CDS 5259 - 5516 306 ## EF1407 hypothetical protein - Prom 5564 - 5623 6.0 Predicted protein(s) >gi|307679241|gb|GL457006.1| GENE 1 3 - 404 353 133 aa, chain + ## HITS:1 COG:no KEGG:EF1412 NR:ns ## KEGG: EF1412 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 7 133 18 144 144 211 99.0 7e-54 SNLILQFAFYKNGVHQGKLFTNVPIEIEADPGDVLTFYEGWFQFYRRIEVTEDTKEITII NSKKLQHVFYTCVVLFLILTLLFLSAQKLSTFIIAEILIYSGIQWLFRQQTYHFTVKKKT ESFASYSKKSIAH >gi|307679241|gb|GL457006.1| GENE 2 430 - 1824 1590 464 aa, chain - ## HITS:1 COG:lin0540 KEGG:ns NR:ns ## COG: lin0540 COG1486 # Protein_GI_number: 16799615 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases # Organism: Listeria innocua # 1 440 1 439 440 629 67.0 1e-180 MTRGALKIATIGGGSSYTPELIEGYIKRKDELPIKEIWLVDIEAGKEKLEIVGAMAKRMI KAAGLDWEVHLTLDREAALKGADFVSTQFRVGLLDARIKDERIPLSHGVLGQETNGAGGM FKAFRTIPVILAIIDDMKRLCPDAWLVNFTNPAGMVTEAAIKHGGWKKTVGLCNVPIGHR KQAAEMLGIPEEDLFFKFAGINHFHWHRVWDKEGQERTQELIDLIYGPKQEQESHLKNIF DAPFHYEQLKDLGMLPCGYHRYYYIEDEMLRHSIEEYERGETRAQVVKETEGRLFELYKD PKLDYKPKELEERGGTHYSDAACEMIASIYNDKRTDMVVSTENNGTITDLPYDCVVEVSG PVTAHGHEPYNWGAFPPAARGIIQNMKAMEETVIRAAINGDYGAALHAFTINPLVPGGVM AKTLLDELLIAHKSHLPNFADAINKIEETQPETVTYVAELMKSN >gi|307679241|gb|GL457006.1| GENE 3 1966 - 2964 1058 332 aa, chain + ## HITS:1 COG:lin0539 KEGG:ns NR:ns ## COG: lin0539 COG1609 # Protein_GI_number: 16799614 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 321 1 321 322 266 42.0 5e-71 MTSIIDVAKVAGVSKSTVSRLISGKGYVSADSQEKILKAMKELNYTPNYVARNLRAGATK TIGFLAPSYLGSLGIFLNRFISIAKKYNYSVTLFFTDGDQQKEIDALNQLKYKQLDGLFL LTRTNEWSVIEPYSAYGPLATWHRIDSPNIYSSYIDHYSGYYRSLEYLQQQGYQKIGHVL GNPENLNTHARKRAMKDFYENTQAPWQAEWLINDQYTNHSGRKIAHYWQQLTDKPEALAF YNDHVAAEFISELENLNYAVPRDVAVIGFDNSYVSELMHITTVDYAIQYQAENSFIYLYN QLNQTNIPEKKLTVRLVERRTVPKKDPADQSL >gi|307679241|gb|GL457006.1| GENE 4 3000 - 4262 1107 420 aa, chain - ## HITS:1 COG:SP1716 KEGG:ns NR:ns ## COG: SP1716 COG1668 # Protein_GI_number: 15901550 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: ABC-type Na+ efflux pump, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 411 1 397 399 202 32.0 7e-52 MSKFWIIATDVYKKNVKSLSFLIMILAPFLLVGIVYLAGSLASGFSGDTTIGLVSENQAL VKELTKNKTEDFSFKAVSSEKKAQEQLKDEKIDAYLLLDTTDNQISGQLYSERSLGNATE MLIPQMLNQLQTMVNANRLNLTAEQVAMLNQQATFKKAKISFDENGKIKTGEDNTGIQMA LAMGITILLFVFISSYSSIIAQEIASEKGTRIMEVILSSTKAQTHFYGKLTGVILVALTQ IFIYGVAFVLGYSQLKNLDFMKSLLSGISPQSIFSSTFIFTLGFFIIGILVFAVLAALCG SLVSKPEDTAKAVQPIMYIGLIGYMIGITFGTNDPQNIVVKVTSFIPLISSYIMPVRLAT ETASTMEAIVSLVILAVFGIILTIFSARLYKSNVLVYSEGGMIQSLKQSISILKNEQKHK >gi|307679241|gb|GL457006.1| GENE 5 4255 - 5154 276 299 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 2 290 5 298 311 110 26 2e-24 MLEVKELVKTFGDFKAVDHVSFTIPDGKILGLIGQNGAGKTTTFRLILNFLTQDSGSVLW NGQPLNEKEYNIIGYLPEERGLYPKITIEDQLIYFASLRGKTKKEIEPKIDFWMEKFQVK GKKTDKVKSLSKGNQQKVQLIATLIHEPKLIILDEPFSGLDPVNAELLKDGIIELKNQGS CVIFSSHNMDNVEKICDHLVMLKNGRMVLDGQVHEIRQQFGRTKLFLESPLSVEEVAATA GVKEAHLRQDGVLEATLENAEVGKVLFDKATANGYIPMFNQQPPTLEEIFKMKVGGQDE >gi|307679241|gb|GL457006.1| GENE 6 5259 - 5516 306 85 aa, chain - ## HITS:1 COG:no KEGG:EF1407 NR:ns ## KEGG: EF1407 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 85 1 85 85 156 95.0 2e-37 MKILTPVYQIKFKKVSNQLLIDERLMNELGTWLNRTGRIWACQSSKSAKEFKNTFYESTG LTANEVHISAETDGLFRLAENKASD Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:22:21 2011 Seq name: gi|307679240|gb|GL457007.1| Enterococcus faecalis TX2141 genomic scaffold Scfld43, whole genome shotgun sequence Length of sequence - 56180 bp Number of predicted genes - 55, with homology - 55 Number of transcription units - 28, operones - 16 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 728 590 ## COG4905 Predicted membrane protein - Prom 759 - 818 3.5 + Prom 655 - 714 9.2 2 2 Op 1 35/0.000 + CDS 854 - 2581 183 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 3 2 Op 2 . + CDS 2571 - 4337 211 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P + Term 4342 - 4386 7.6 - Term 4330 - 4374 7.6 4 3 Tu 1 . - CDS 4389 - 4928 570 ## EF0940 hypothetical protein - Prom 5129 - 5188 6.8 5 4 Tu 1 . - CDS 5202 - 5624 571 ## COG1803 Methylglyoxal synthase - Prom 5855 - 5914 6.7 + Prom 5719 - 5778 5.7 6 5 Tu 1 . + CDS 5810 - 6913 1464 ## COG3839 ABC-type sugar transport systems, ATPase components + Term 6920 - 6964 15.5 - Term 6908 - 6952 15.5 7 6 Tu 1 . - CDS 6963 - 7580 673 ## EF0937 hypothetical protein - Prom 7620 - 7679 5.0 - Term 7654 - 7703 13.1 8 7 Op 1 7/0.111 - CDS 7708 - 8595 936 ## COG0030 Dimethyladenosine transferase (rRNA methylation) 9 7 Op 2 3/0.111 - CDS 8614 - 9186 777 ## COG1658 Small primase-like proteins (Toprim domain) 10 7 Op 3 . - CDS 9195 - 9965 952 ## COG0084 Mg-dependent DNase - Prom 10064 - 10123 4.3 + Prom 10039 - 10098 5.0 11 8 Op 1 . + CDS 10124 - 12322 2254 ## COG3973 Superfamily I DNA and RNA helicases + Prom 12340 - 12399 3.6 12 8 Op 2 . + CDS 12443 - 13048 567 ## EF0932 hypothetical protein + Term 13051 - 13112 12.4 - Term 13361 - 13418 15.1 13 9 Tu 1 . - CDS 13427 - 15436 2561 ## COG0143 Methionyl-tRNA synthetase - Prom 15485 - 15544 5.2 - Term 15555 - 15615 13.2 14 10 Op 1 . - CDS 15624 - 17015 1578 ## COG0531 Amino acid transporters 15 10 Op 2 . - CDS 17056 - 17919 918 ## COG4975 Putative glucose uptake permease - Prom 17989 - 18048 7.7 - Term 18017 - 18060 0.5 16 11 Op 1 40/0.000 - CDS 18067 - 19092 1059 ## COG0642 Signal transduction histidine kinase 17 11 Op 2 . - CDS 19106 - 19780 702 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 19808 - 19867 3.0 18 11 Op 3 . - CDS 19869 - 20093 272 ## EF0925 hypothetical protein - Prom 20143 - 20202 9.3 19 12 Op 1 2/0.111 - CDS 20367 - 21239 978 ## COG3865 Uncharacterized protein conserved in bacteria 20 12 Op 2 . - CDS 21304 - 22134 524 ## COG0583 Transcriptional regulator - Prom 22163 - 22222 8.2 + Prom 22162 - 22221 6.8 21 13 Tu 1 . + CDS 22247 - 23275 1060 ## COG2855 Predicted membrane protein + Term 23276 - 23323 13.1 + Prom 23282 - 23341 7.8 22 14 Tu 1 . + CDS 23369 - 24544 956 ## COG0659 Sulfate permease and related transporters (MFS superfamily) + Term 24747 - 24796 2.2 23 15 Op 1 . - CDS 24560 - 25075 195 ## PROTEIN SUPPORTED gi|148360238|ref|YP_001251445.1| nucleotidyltransferase PLUS glutamate rich protein GrpB PLUS ribosomal protein alanine acetyltransferase 24 15 Op 2 . - CDS 25093 - 25527 604 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 25549 - 25608 9.2 - Term 25578 - 25635 4.8 25 16 Tu 1 . - CDS 25655 - 26014 552 ## COG3759 Predicted membrane protein - Prom 26041 - 26100 4.1 + Prom 25891 - 25950 4.8 26 17 Tu 1 . + CDS 26112 - 26462 614 ## PROTEIN SUPPORTED gi|238856926|ref|ZP_04647185.1| 30S ribosomal protein S8 + Term 26491 - 26544 3.2 - Term 26456 - 26491 7.1 27 18 Op 1 46/0.000 - CDS 26509 - 26868 595 ## PROTEIN SUPPORTED gi|29375500|ref|NP_814654.1| 50S ribosomal protein L20 28 18 Op 2 36/0.000 - CDS 26929 - 27129 340 ## PROTEIN SUPPORTED gi|29375499|ref|NP_814653.1| 50S ribosomal protein L35 - Prom 27163 - 27222 1.6 - Term 27159 - 27192 -0.9 29 18 Op 3 . - CDS 27243 - 27743 426 ## PROTEIN SUPPORTED gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 - Prom 27956 - 28015 10.2 - Term 27909 - 27942 0.8 30 19 Op 1 . - CDS 28163 - 29233 625 ## COG0675 Transposase and inactivated derivatives 31 19 Op 2 44/0.000 - CDS 29274 - 30230 1183 ## COG4608 ABC-type oligopeptide transport system, ATPase component 32 19 Op 3 44/0.000 - CDS 30230 - 31282 1426 ## COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 33 19 Op 4 49/0.000 - CDS 31298 - 32350 1212 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 34 19 Op 5 . - CDS 32350 - 33291 249 ## PROTEIN SUPPORTED gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 - Prom 33396 - 33455 4.0 + Prom 33290 - 33349 6.1 35 20 Tu 1 . + CDS 33382 - 33732 290 ## EF0908 hypothetical protein + Term 33746 - 33794 3.0 - Term 33736 - 33780 1.3 36 21 Tu 1 . - CDS 33811 - 35481 2261 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 35523 - 35582 9.4 + Prom 35561 - 35620 7.5 37 22 Op 1 . + CDS 35726 - 36799 1065 ## COG1289 Predicted membrane protein 38 22 Op 2 . + CDS 36796 - 37431 487 ## COG1357 Uncharacterized low-complexity proteins + Term 37568 - 37602 -0.3 + Prom 37499 - 37558 5.7 39 23 Op 1 5/0.111 + CDS 37701 - 38645 1065 ## COG1577 Mevalonate kinase 40 23 Op 2 5/0.111 + CDS 38645 - 39640 1111 ## COG3407 Mevalonate pyrophosphate decarboxylase 41 23 Op 3 3/0.111 + CDS 39643 - 40749 1134 ## COG1577 Mevalonate kinase 42 23 Op 4 . + CDS 40733 - 41776 1018 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases + Term 41778 - 41817 9.3 - Term 41761 - 41809 14.7 43 24 Op 1 . - CDS 41821 - 44418 3090 ## COG1454 Alcohol dehydrogenase, class IV - Prom 44469 - 44528 7.6 44 24 Op 2 . - CDS 44576 - 44863 329 ## EF0899 hypothetical protein - Prom 44914 - 44973 7.1 45 25 Op 1 15/0.000 - CDS 45294 - 45671 597 ## COG1862 Preprotein translocase subunit YajC - Prom 45691 - 45750 3.5 46 25 Op 2 . - CDS 45753 - 46898 1392 ## COG0343 Queuine/archaeosine tRNA-ribosyltransferase - Prom 46930 - 46989 6.3 - Term 46998 - 47048 7.6 47 26 Op 1 . - CDS 47057 - 48145 1254 ## COG0371 Glycerol dehydrogenase and related enzymes 48 26 Op 2 . - CDS 48160 - 48279 81 ## gi|315149655|gb|EFT93671.1| alcohol dehydrogenase - Prom 48302 - 48361 7.9 + Prom 48193 - 48252 8.9 49 27 Op 1 16/0.000 + CDS 48334 - 49797 1862 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 50 27 Op 2 1/0.111 + CDS 49790 - 50512 633 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 51 27 Op 3 . + CDS 50528 - 51682 1278 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase + Term 51688 - 51740 15.0 - Term 51676 - 51726 15.6 52 28 Op 1 . - CDS 51730 - 52041 472 ## EF0890 hypothetical protein 53 28 Op 2 . - CDS 52057 - 52905 1013 ## COG2199 FOG: GGDEF domain 54 28 Op 3 . - CDS 52907 - 54973 1829 ## EF0888 hypothetical protein 55 28 Op 4 . - CDS 54988 - 56178 938 ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis Predicted protein(s) >gi|307679240|gb|GL457007.1| GENE 1 2 - 728 590 242 aa, chain - ## HITS:1 COG:lin2818 KEGG:ns NR:ns ## COG: lin2818 COG4905 # Protein_GI_number: 16801879 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 4 237 3 251 270 198 38.0 7e-51 MEKMSQVILLFFIYSFIGWLWETVYCSLKAKKFVYRGFLVGPYCPIYGFGVLSVLYFVEP FENNLLVLYVGSAVLVTILEYVTSYGLEKLFHASWWDYHDVPFNLNGRVALPVSLFWGLG CVLIVKVIQPEIAKVVSFLQATFGNYLALCIVIVMGLDLIYTLLNMQGFKKLITEMGQTL ETNQQEFKQRLNTKMEIATADWQKLKERTKKEYFQNRLNFQQRRFINNYPKLTLKNANCK IK >gi|307679240|gb|GL457007.1| GENE 2 854 - 2581 183 575 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 347 555 19 224 305 75 27 8e-13 MFGLLKYAKNYRKQIILGPVFKFLEACFELVLPLFMAHLVDVGIRQNDRQTVIEMALWML VMSLVGLFFVMICQYYASVASQGFGTELRNQLMKKINQLSHKELNSFGTDTLITRITNDI NQLQLALAMFIRLVIRTPFLSIGSVVMAFYIDVQMGFLFLLLLPIFSLILFIIIKVTVPL YQKVQEYLDRLNRQISQNLSGVRVIRAFARKETEQRHVDKASDDLGDIYIRVSNVSALLT PLTTLIMNVGILFLLYFSGLKVSFGSLQQGEVLALINYMNQMMLALIVASNLVVIFTRAA ASANRVNEVLTVESQLTDTPESAKTSPQFGDITFDHVDFRYEPEAGLALENINFTIPKGS ILGITGPTGSGKSTLTQLIPRFYDVSAGNLFINGVNVRDWPLFTLRQQVASVPQTAVLFT GTIRENLQWGKPNATDEDCWEALAIAQCKEFVEQLDQGLDTPVNEGGKNFSGGQRQRLTI ARALIRKPHLLILDDSLSALDYQTDLNLRRALQKERAETTVILISQRVSSIATANQILVL DSGKVAGLGTHEELLTSSKEYQEIVASQEEDTHAN >gi|307679240|gb|GL457007.1| GENE 3 2571 - 4337 211 588 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 348 572 132 356 398 85 28 5e-16 MQTKKIHFGAFSRFKPYLLRYPKEIIGALILGILSGFSTVLMTYYIGKSVDTMVGKGQVN AAQLIKILGLLAGILLVTVLSQWLIQRLGNRVSYLSTTQLRKDAFAHLNQLPLSYYDQTS HGNIVSRFTNDIDNISMACSAVFNQLFSGMATVVVALLFMIRLSPLLTLVVLISTPIIFI VNWLVAKASQKNFAAQQTIVGEISGFVSEMVGNQKIVKAFQQEQATQETFEALNQTLYEK GQKAQFSSSLTNPLSRFIDHLSYLSIGLVGGLLVLSGNPLVTVGVISSFTIYSSQFSKPF IELSGITNQIQAALAGLERTFDMMDQPVERPDAPNAIVLKEARGRVEFKDVDFSYTPTRP LIENFNLIAEPGETIAIVGRTGAGKSTLVNLLMRFYEVDHGQITVDTHDITQITRDSLRK SFGMVLQDTWLFDSSIRENLTYGNPEASDEEIIEAMKKAHIFDFVMRLPQGLDTEIGSQG VKISEGQRQLMTIARTMISNPPMLILDEATSSVDTLTEQKIQDAFLQMMTGRTSFVIAHR LATIKSAEKILVMDNGQVVEIGTHDELLQKEQGYYRDLYEAQFNQKAQ >gi|307679240|gb|GL457007.1| GENE 4 4389 - 4928 570 179 aa, chain - ## HITS:1 COG:no KEGG:EF0940 NR:ns ## KEGG: EF0940 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 179 1 179 179 297 100.0 1e-79 MTKKKFGTKSIALMGVLIAVVVVFSRFFAYETTFLKISFTFIPESLIGMIFGPFWAGIGT AVADVVGMLLFPKAGYFPGFTLNAFLAGAIYGYFYYKKEMTWQRVILATLLVTVLINIIL TPLWLSLMYGVNLANFAWWVPRLIKTVIFFPIQVIATYYLGNKIPFKRLFGKPLSELDQ >gi|307679240|gb|GL457007.1| GENE 5 5202 - 5624 571 140 aa, chain - ## HITS:1 COG:lin2020 KEGG:ns NR:ns ## COG: lin2020 COG1803 # Protein_GI_number: 16801086 # Func_class: G Carbohydrate transport and metabolism # Function: Methylglyoxal synthase # Organism: Listeria innocua # 1 129 1 129 134 204 76.0 4e-53 MKIALIAHDRKKTLMIKLATAYKHILEKHELYATGTTGMKVMEATGLPVHCFKSGPLGGD QQIGAMISEDNIDLVIFLRDPLSAQPHEPDVTALIRLSDVYEIPLATNIGSAEILLRGVE AGFADFREVIHEGDRRPLAF >gi|307679240|gb|GL457007.1| GENE 6 5810 - 6913 1464 367 aa, chain + ## HITS:1 COG:SPy1976 KEGG:ns NR:ns ## COG: SPy1976 COG3839 # Protein_GI_number: 15675768 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Streptococcus pyogenes M1 GAS # 1 367 1 377 377 521 68.0 1e-148 MVEMALRNVYKKYDNAEHYSVTDFNLEITDREFIVFVGPSGCGKSTTLRMIAGLEDITEG ELSIGDKVMNDVAPKDRDIAMVFQNYALYPHMTVFDNMAFGLKLRKYDKAEIKKRVENAA DILGLTEYLQRKPAALSGGQRQRVALGRAIVRDAKVFLMDEPLSNLDAKLRVAMRAEIAK LHQRLETTTIYVTHDQTEAMTMADRIVIMKDGFIQQIGSPKEVYNTPKNMFVAGFIGSPA MNFFKVTLNNGVISNQHGLKLAIPEGRNKELVEHGYEGKELIFGIRPEDIHSEQVALTAM KDAVIKSEVVVSELLGAESMLYTKIGDTEFISKVDARDFHHPGEMIDLAFDINKGHFFDP QTEEVIK >gi|307679240|gb|GL457007.1| GENE 7 6963 - 7580 673 205 aa, chain - ## HITS:1 COG:no KEGG:EF0937 NR:ns ## KEGG: EF0937 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 205 1 205 205 329 100.0 5e-89 MKTNSVKRLTISALLIAMGIIIPMVMPRITIGPASFTLASHVPVFIAMFISPVVAIAVSL GTGFGFFLSATPIIALRALSHLIFAVIGAVILQKHPEILINKEGKFTLLNGKLQLFNVGI GVIHSAAELVVVSVFYTMGNLPGTYYTAGFMYSIFLLMGVGGLIHSLVDFSIAYFLASTL SKHVDIPTFTEAKQPKVIKKKVKLA >gi|307679240|gb|GL457007.1| GENE 8 7708 - 8595 936 295 aa, chain - ## HITS:1 COG:SPy0262 KEGG:ns NR:ns ## COG: SPy0262 COG0030 # Protein_GI_number: 15674442 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Dimethyladenosine transferase (rRNA methylation) # Organism: Streptococcus pyogenes M1 GAS # 7 291 3 287 290 352 63.0 5e-97 MTDYKEIATPSRTKEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPG IGALTEQLAMNAAQVVAFEIDDRLIPVLADTLSRYDNVTVVHQDVLKADLVETTNQVFQE KYPIKVVANLPYYITTPIMMHFLESSLDVAEMVVMMQKEVADRIAAKPGTKAYGSLSIAV QYFMEASVAFIVPKTVFVPQPNVDSAIIKLTRRATPAVTVTNEKEFFKLTKASFQLRRKT LWNNLTHFYGKDEQTVAWLKESLAEAEIDPSRRGETLSLEEFARLSNALEKNKPV >gi|307679240|gb|GL457007.1| GENE 9 8614 - 9186 777 190 aa, chain - ## HITS:1 COG:BS_yabF KEGG:ns NR:ns ## COG: BS_yabF COG1658 # Protein_GI_number: 16077109 # Func_class: L Replication, recombination and repair # Function: Small primase-like proteins (Toprim domain) # Organism: Bacillus subtilis # 1 189 1 186 186 170 53.0 2e-42 MKVAEIIVVEGKDDTRRIQEVVAADTIETIGSAINDEILTQIEHAQETRGVIIFTDPDYS GEKIRKTIMEVVPDAKHAFLSRKVAVPKKNGGSLGVEHASDEAIIEALKKVVTPVQADED YQEIPRQTLVEYGLIAGANAKKYRELLGDDLRIGYTNSKQLVKRLSMFRITEAELKESMT RILKELANEE >gi|307679240|gb|GL457007.1| GENE 10 9195 - 9965 952 256 aa, chain - ## HITS:1 COG:SPy0260 KEGG:ns NR:ns ## COG: SPy0260 COG0084 # Protein_GI_number: 15674440 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Streptococcus pyogenes M1 GAS # 2 255 21 274 274 320 61.0 2e-87 MIFDTHTHLNAEQFNDDIPETIAHAQELGVTEMAVVGFDEPTIEKSLLLSQEYANIYSII GWHPTEAGSYTPEVERRLQEQLTLPKIVALGEIGLDYYWMEDPKEVQEKVFRRQIAIARE MNLPFSVHTREALEDTYRILKDEKISDIGGIMHSFSGDAEWMKKFLDLGLHISFSGVVTF KKALDVQEAAMAVPLERMLVETDAPYLAPVPYRGKRNEPGYTRYVVEKIAELRQLTFEEV AEQTRVNAHRLFRIDK >gi|307679240|gb|GL457007.1| GENE 11 10124 - 12322 2254 732 aa, chain + ## HITS:1 COG:BS_yvgS KEGG:ns NR:ns ## COG: BS_yvgS COG3973 # Protein_GI_number: 16080398 # Func_class: R General function prediction only # Function: Superfamily I DNA and RNA helicases # Organism: Bacillus subtilis # 8 731 11 764 774 264 28.0 4e-70 MTDEKIYEQQHLTTVCHELQAAKKVYEEQLANTMKDGKHMLEEFGRDSKLNFDSYADNLE TFAMLEMKNREIDQWNLKNEATAKNLDKVKRLLQVPYFGKIGVTFEDSPEEPENFYIGVN DFTSLEEETRIHDWRSPIASLFYDNVLGKTAYTAHQQTIPVQLDLKRQLIIEKDQLINYF DTTIAIQDDVLLHSLEEDASPYMKDITTTIQQEQNQIIRDETQPLLLVNGIAGSGKTSAI MQRIAYLLYQHRAEITADNILLLSPNSTFIDYISQVLPNLGERNPLNLTLLQFLRFTTKE AWPMEEETDYFERITRSEATEQEHVIRSKEFATFLLSNPEKAVVQPHFFRPLTFKKQTLF TSETIFKLYQETPADLSIRQRISATKEKLTSLWTRYLLKQAHSKKMLDQFQDLTEAEQVR YFGTVITEDNEKHLADFALKRLKKKYRSITAAIKNDAWLDQWAFFETFYSLFTEKSYQKE TAVFTADEIVALILVKHAFIENLANQQMAFILVDEVQDYTEAQLLLLLTLFPKASFTLAG DENQAIFNTAIEFSEAHDLLVNETSRSVGTYQLLNSYRSSKEITRLFQTLGTQPEQLTIV PIRHDGEKPTFIPCDSASDYLKAIVTSIATFDPKESTAIITKTFAEKEQLTKELSASLSL EEHPSLQVLSIDMAKGLEFDNVILHNPNVNRYSDNKRDKRILYTAISRGMKRVVLPYTGT LSERFTPYLAAQ >gi|307679240|gb|GL457007.1| GENE 12 12443 - 13048 567 201 aa, chain + ## HITS:1 COG:no KEGG:EF0932 NR:ns ## KEGG: EF0932 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 201 1 201 201 305 98.0 9e-82 MKQSPDLENFLKTSIQKNVTIERKQQNQTIWHWLLLILFGLLTFGSLTQQLLLIGLFTLI AAIVKGPLMLVWGTIYSALVALFPPFALVLSLLFFIINLGTVMKSWRITLTSAYFYLIPL GFSLLKTTDWVSTPYFLTGLALLSILGLHFILEWLYKNNSLGRLLTWQIISVPFSLLLII LPSRLTKGRFGKKRIPKKVKL >gi|307679240|gb|GL457007.1| GENE 13 13427 - 15436 2561 669 aa, chain - ## HITS:1 COG:lin0216_1 KEGG:ns NR:ns ## COG: lin0216_1 COG0143 # Protein_GI_number: 16799293 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA synthetase # Organism: Listeria innocua # 3 544 4 547 549 808 71.0 0 MSQKETFYITTPIYYPSGKLHIGNSYTTIACDAMARYKRLMGFDVFYLTGVDEHGQKIEK KAAELNVTPKEYVDKMAADVQKLWKTLDISYDKFIRTTDDYHMAAVQQIFDRLVEQGDIY LGEYEGWYSVSDEEFFTETQLAEVYRDDEGNVIGGKAPSGHEVELVKEESYFFRMSKYAD RLVQYYEEHPEFIQPESRKNEMLNNFIKPGLEDLAVSRTTFSWGIPLKNDPKHVVYVWID ALSNYITALGYGSEDDSLFQKYWPANVQMVGKEIVRFHTIYWPIMLMALDLPLPKKVFGH GWLLMKDGKMSKSKGNVVYPEMLVERYGLDALRYYLLRAIPFGSDGVFTPEDFVSRLNYD LANDLGNLLNRTIAMINKYCDGKVPAYASKVTPFDSELSTTAANVIGKYHEAMEKMEFNT AIAEIWTLVSRANKYIDETAPWVLAKEEEKRNELESVMIHLAESLRIVAILLQPVMTETP GKIFEQLGLDPETMNMENIHFGEFPTDVTVTSKGTPIFPRLEIETEVTYIQKKMSQSESA TEEDIKWNPEETTLVSTKEKQIKYDDFDKVELKVAEVIDCKKVKGADKLLQFRLDAGDEN HRQILSGIAEFYPDPAALIGKKVVIVANLKPRKMRGQISQGMILSAESPEGKLQIVEAPK EMPNGAGIA >gi|307679240|gb|GL457007.1| GENE 14 15624 - 17015 1578 463 aa, chain - ## HITS:1 COG:lin0648 KEGG:ns NR:ns ## COG: lin0648 COG0531 # Protein_GI_number: 16799723 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Listeria innocua # 2 455 3 458 463 422 50.0 1e-118 MSIFRKKEITVPVNDSGGMKKNLKTMDLIFLGIGAVVGTGIFVVTGVAAERYAGPGLVLS FLVAAAAIILSGLCYAEFASRIPVIGGPYAYMYVVFGEIVAWMTGWMIICEFFLAVSSVA SGWSGYVHGFLDSLGFSLPQALSGAYNPTNGTYIDLIAMLVVVAVTFWVSLEAKTALRLN NLMVFVKFGIILLFVLVGIFYVKPTNWQPFIPYGFSGVFSGAALVFFAFLGFDAVSMAAE EVKNPKKDIPKGIIGSIIISTLLYIVVTLVLTGIVPFTDLGVKDPVAFAMRFINHGAIAT IISVGAILTLLTVTIAMMYSLARVIYAISKDGLLPQFMSKIDEKRHTPKNATYVAGFLAM VFAGIVPMEMLAELTNIVTLFYLMFLALGIIKLRTMKGEPQAGEFKVPLVPVLPLISIVV CAALMFQLSLATWQVFGIAVVIGLAIYFFYGRHHSIVRFETKE >gi|307679240|gb|GL457007.1| GENE 15 17056 - 17919 918 287 aa, chain - ## HITS:1 COG:SPy2205 KEGG:ns NR:ns ## COG: SPy2205 COG4975 # Protein_GI_number: 15675938 # Func_class: G Carbohydrate transport and metabolism # Function: Putative glucose uptake permease # Organism: Streptococcus pyogenes M1 GAS # 10 287 1 277 277 233 49.0 3e-61 MSLLIALVPMIAWGSIGLVSGKIGGSANQQTLGMTIGALLFSIVVFFVIQPTLTTATLIV GFISGLFWSLGQNKQFHSMKYMGVSVGLPISTGMQLVVNTVAGAVFFHEWTKTKDFVVGF IALAFLVFGVYLTARQDDDSQPKTSNSMLDFNKGIRALIFSTVGYGVYTIIINATGLDPW GIILPQSIGMLVGASFFAFKKVKVDRFVWMNMTTGLLWGLGNICMLLTMREIGLAISFSL SQMGIIISTLGGIFLLGERKSKKEMFYVIFGCIFVILGGILLGYMKA >gi|307679240|gb|GL457007.1| GENE 16 18067 - 19092 1059 341 aa, chain - ## HITS:1 COG:CAC0225 KEGG:ns NR:ns ## COG: CAC0225 COG0642 # Protein_GI_number: 15893517 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 1 340 1 336 339 199 33.0 6e-51 MTILKYLKDRWLLLIGWLFFLFLTCFILWLAPNVRLDWTVVGYIFLLQSVFLSLFLTIDY YLKRKWWLSLATEKEPPSLQEYLNTAEKEEELLVQTYINGLLQEHQQTMQQAINNQQDQK DYIDSWVHEIKVPLTAITLLVQSVEDDIPEKKYYLLENELGKIDEYVEQVLYYARLDSFS RDYLLQEYSLKEIVQSVVRTQANYFIQKRLQFSIEGEDEAVLTDRKWVIFIFRQLLSNAV KYTPEGGTITVLISKNKQGIYLSLKDSGIGIPTQDQRRIFDKGFTGENGRKSEQHSTGLG LYLAHSLAKKLGHDLTVESTEGQGTTMTLFFPSLSYYNEVK >gi|307679240|gb|GL457007.1| GENE 17 19106 - 19780 702 224 aa, chain - ## HITS:1 COG:CAC0224 KEGG:ns NR:ns ## COG: CAC0224 COG0745 # Protein_GI_number: 15893516 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 1 223 1 222 223 247 52.0 1e-65 MAKIMIVEDETTIRELISEELQKWQFETIGTTDFNDVLDDFQEENPQLVLMDINLPVYDG YYWCQKIREVSKVPIIFISSRSTNMDMIMAMNMGADDFVTKPFQIDVLIAKINALLRRSY NYSDTDSEVLSHNGITLNVDNGRMEIRGEMIDLSKNEYRLLYLLMKKHGKILTREKLLRA LWDDERFVDDNTLTVNINRLRKKIEQAGIAGYIETKVGVGYMVP >gi|307679240|gb|GL457007.1| GENE 18 19869 - 20093 272 74 aa, chain - ## HITS:1 COG:no KEGG:EF0925 NR:ns ## KEGG: EF0925 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 74 1 74 74 96 100.0 3e-19 MIELIVLLTVFTYGTNFVLYLILKNKKSMPIVEKASIVLGINMSVLLLDGIFAFVGKFIM LSEWELLAPIFEIV >gi|307679240|gb|GL457007.1| GENE 19 20367 - 21239 978 290 aa, chain - ## HITS:1 COG:CAC3467 KEGG:ns NR:ns ## COG: CAC3467 COG3865 # Protein_GI_number: 15896706 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 288 1 294 294 171 33.0 2e-42 MPKFSPCLWFDTQAEEAANFYTTIFEKGAILSKTNYVNEEHQPQGTSLMTIEFTLANQTI IGLNGGPEFSFTPASSFFVECKTLSQTETLWKNLTADGQILMPFGEYPFSPLYGWVVDKF GVSWQVSFSGKEQTIVPTFMFANEKYGEAAKALSEWLAIFGPGEIIEKVEYEDGNIAQAL FTLQEQPFRVMDARDKHDFDFTMAFSIYIDCENQEEIDRLWQQVTAKGKEWPCGWMEDQF GVSWQTGNPELKRYLSDSNPARANEVTKKLYQMKKIDLNQLKEVYDKYNH >gi|307679240|gb|GL457007.1| GENE 20 21304 - 22134 524 276 aa, chain - ## HITS:1 COG:L0220 KEGG:ns NR:ns ## COG: L0220 COG0583 # Protein_GI_number: 15672356 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 265 1 266 272 191 40.0 2e-48 MFKLLKTFQIVYEQMNFSKAATCLYISQPAVSNQIKQLEEELGCSLFLRNGRQDVVPTRQ AEVLYNRLLNLADDWQETLTALHQARLPKETCRIAASNTFAVYYLPQLMQHLQTQYATIN FVLEMNNSEEVVEKVEKHQVDFGFIEKPLITKGATREEIIQDQLVLAGDPANQNWLVREK DSGVFHYTQQYLEESNQSPTLMTVKNNEMIVKMLELGMGQSLLSRKAITEKIPFQTLGEK YWRSFYFLTRGHLKSSLLQEVKQAIYRFYQKEMNKY >gi|307679240|gb|GL457007.1| GENE 21 22247 - 23275 1060 342 aa, chain + ## HITS:1 COG:L178384 KEGG:ns NR:ns ## COG: L178384 COG2855 # Protein_GI_number: 15672357 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 13 331 1 320 331 281 56.0 9e-76 MKNSENDYIQSLLQILPGLLTAFLVACLSKFFAIWLPSLGAATIAILLGIFLGNTFVRGA NLNRGTKVAESKLLEFSVVLLGTTVTFQTIAQIGLQGVAFILIQMSLTIIFAYLIGKKLA FSDNMSLLMAGGNAVCGSSAIASIAPAIQADEEEKGQIITLVNLLGTVLMLTLPILSGII YGTNLLARSALIGGTLQSVGQVVASANMVNENAVQLAMLFKIMRIVLLVAVVYLFGRFKQ SKTAESEAELVKVTKKSSALPWYVVGFFIACVFNSLIHFPVVISETAHFFSSWFEITALA AIGLRLDFKKFFQEGKRFLIYGLSVGTVQVVLAILLLALLQF >gi|307679240|gb|GL457007.1| GENE 22 23369 - 24544 956 391 aa, chain + ## HITS:1 COG:PA2563 KEGG:ns NR:ns ## COG: PA2563 COG0659 # Protein_GI_number: 15597759 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfate permease and related transporters (MFS superfamily) # Organism: Pseudomonas aeruginosa # 7 380 6 382 495 342 49.0 8e-94 MLFSIKKSEWLGNERNDLFAGLVSSVAILPEVIGFAIIAGVHPLSAVFASAVTLLVITFT GGRPAMVSASAGSMALVLAGLIQAHGLSYMLAATILTGFLQFILGYLGIHKLMRFIPKTV MYGFVNALAILIFMAQVQQLPHQTLWSYGMIICSILLIYLLPKFITIVPPALIVILFMTI LSYFLKGHLQTVGDLGEMSQFHPAIRWPNVPVNLETLWIILPSSVALAMVGLIESLLTIP IVDKMTASQSDSQREVKAQGFANIITGFFGGQAGCAMIGQAVINVKSGGRKRLSTLISGI TLLLFIFVFKSVMVAIPTAALIGIMMTVAVDTFDWESLQLFRTFEITEIVILLVTVGVIV YTHNLAIGIILGVLLSGLLYHFFKKEPKKSC >gi|307679240|gb|GL457007.1| GENE 23 24560 - 25075 195 171 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148360238|ref|YP_001251445.1| nucleotidyltransferase PLUS glutamate rich protein GrpB PLUS ribosomal protein alanine acetyltransferase [Legionella pneumophila str. Corby] # 3 165 175 342 601 79 31 3e-14 MRVIVTEYQPAWVEQFEEEAQALKQILKENCLKVEHIGSTSVPNLAAKPIIDFLVIVEEI EKVDLLQGEFERIGYEYMGEFGLSGRRYLRKGPIKRTHHVHIYQFDNTQEILRHLAFRNY LRENPAIATTYGTLKKQLAQAHPDSIDKYMDGKDAFIKKIEKEALKKYWEK >gi|307679240|gb|GL457007.1| GENE 24 25093 - 25527 604 144 aa, chain - ## HITS:1 COG:lin1092 KEGG:ns NR:ns ## COG: lin1092 COG0454 # Protein_GI_number: 16800161 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Listeria innocua # 1 142 2 142 150 107 40.0 5e-24 MLNQKEVKKNDYPQLISLWRSSVEATHLFLSQADIDKIEVVLPDYFQQVQLSMWLNEEQK CVGFSGTNQQTLEMLFIDPVYFRKGYGGEIIKKLIEQESIIFVDANKQNEGAVKFYQSQG FQVIGESKEDPQGNPFPILHMKRI >gi|307679240|gb|GL457007.1| GENE 25 25655 - 26014 552 119 aa, chain - ## HITS:1 COG:L101688 KEGG:ns NR:ns ## COG: L101688 COG3759 # Protein_GI_number: 15673453 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 1 116 1 116 119 122 69.0 1e-28 MTLISTILVTLVAVEFFYIMYLETIVPTSESTSRVFKMDKQELQRKSVTTLFKNQGIYNG LIGAGLIYSVYFAQATMEMTKFLLIYIILVAAYGSLTSDKKIILTQGGLAIVALLSLLV >gi|307679240|gb|GL457007.1| GENE 26 26112 - 26462 614 116 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|238856926|ref|ZP_04647185.1| 30S ribosomal protein S8 [Enterococcus faecalis TUSoD Ef11] # 1 116 1 116 116 241 100 9e-63 MTFQETISAYIQERYQITPDFPFKKHPDYLVFRHPRNAKWFALIMPLDAQLLGATENKQL TILTVKLAPELIALLKNQPGYFPAYHMNKEHWLSLSEEIPLSQIFSFIDESYQRSY >gi|307679240|gb|GL457007.1| GENE 27 26509 - 26868 595 119 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29375500|ref|NP_814654.1| 50S ribosomal protein L20 [Enterococcus faecalis V583] # 1 119 1 119 119 233 100 1e-60 MARVKGGTVTRKRRKKVLKLAKGYYGSKHTLFKSAKEQVMNSYYYAFRDRRQKKRDFRKL WIARINAAARMNGLSYSKLMHGLKLAEIDINRKMLADLAVNDAAAFTALAEQAKDALSK >gi|307679240|gb|GL457007.1| GENE 28 26929 - 27129 340 66 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29375499|ref|NP_814653.1| 50S ribosomal protein L35 [Enterococcus faecalis V583] # 1 66 1 66 66 135 100 5e-31 MPKQKTHRGLAKRVKRTGGGGLKRGRAFTSHRFHGKTKKQRRQLRKASMVAKGDYKRIRQ QLARMK >gi|307679240|gb|GL457007.1| GENE 29 27243 - 27743 426 166 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 [Vibrio campbellii AND4] # 2 163 1 164 166 168 50 5e-41 MVNDGIRARELRLIGQDGEQLGVKTKAEALQIAESANLDLVLVAPGAKPPVARIMDYGKF RFEQQKKEREARKKQKVINVKEVRLSPTIDVNDFNTKLRNARKFLEKGDKVKASIRFKGR AITHKEIGQKVLDRLAEETADIATVEQKAKMDGRSMFLTLAPKNDK >gi|307679240|gb|GL457007.1| GENE 30 28163 - 29233 625 356 aa, chain - ## HITS:1 COG:DR0666 KEGG:ns NR:ns ## COG: DR0666 COG0675 # Protein_GI_number: 15805693 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Deinococcus radiodurans # 5 314 5 316 408 145 34.0 1e-34 MKALKAYKYRLYPTSKQEQFIQKTFSCVRLVYNLMLQDRIDIYKEMRKNPQQTFKMPTPA KYKKQYPVLREVDSLALANAQVYLDRAFKNFYREKGMGFPKKKKKETVHSYTTNNQHGTV KILDNRYLKVPKLKSLIKMKVHRQPLGEIKSVTISMSASHNYYVSILCEAPIETKTKQQK MVGICSSREKFALLSNGESFEKSYCSKHLKQKLRQEERKLNKRKMIALEKGVDLSQAKNY QKQKIKVAKIREKIANQRTDILNKITTELVSSYDVICIEKAHHSNERPPKHDRSELAWSL FLAKLLYKAQWYGKELICIESEEIETELSFSESTENSEYLRSQKILERGLSKRETL >gi|307679240|gb|GL457007.1| GENE 31 29274 - 30230 1183 318 aa, chain - ## HITS:1 COG:lin2296 KEGG:ns NR:ns ## COG: lin2296 COG4608 # Protein_GI_number: 16801360 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, ATPase component # Organism: Listeria innocua # 1 308 1 311 322 428 68.0 1e-120 MAEEKKVLLEVTGLKQYFNVGRKDEVKAIDDISFHIFEGETFGLVGESGSGKSTTGRSVI RLYDPTAGEILFDGKDISKIKSKADMQAFRRDVQMIFQDPYASLNPRMKVNDIIAEGIDV NGLAKTPKEREEKVNELLKTVGLNPSHSTRYPHEFSGGQRQRIGIARALAVNPRFIICDE PISALDVSIQAQVVNLLQDLQKEQGLTYLFIAHDLSMVKHISDRIGVMHSGKLLEMGTSD DVYNFGVHPYTESLLSAIPLPDPDYERTRKRIVYQPAAADGKDRELREILNGHYVYCAED EVAMYREKIEEKKRKAGL >gi|307679240|gb|GL457007.1| GENE 32 30230 - 31282 1426 350 aa, chain - ## HITS:1 COG:lin2297 KEGG:ns NR:ns ## COG: lin2297 COG0444 # Protein_GI_number: 16801361 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component # Organism: Listeria innocua # 1 341 1 342 358 499 72.0 1e-141 MEKVLEVKDLRISFDTFAGKVNAIRGVSFDLYKGETLAIVGESGSGKSVTTRSIMRLLSS NANIDNGEILFKGQDIVHKTEKQMQAIRGKEIAMIFQDPMTSLDPTMPIGKQVAESLIKH NKVSKKEGLAQALELLKLVGIPNAEKRLKNYPHQFSGGQRQRIVIAIALICYPEVLIADE PTTALDVTIQAQILELLKDLQEKISTSIIFITHDLGVVANVADRVAVMYGGRLVEVGTAE EIFYNPQHPYTWGLLGSMPTMEGTEDKLYAIPGSPPDLLDPPTGDAFYPRNEFALKIDTE KEPPYFEVSPTHKAATWLLAPQAPKVTPPAEIVRRWAIYAERQKNPGGSN >gi|307679240|gb|GL457007.1| GENE 33 31298 - 32350 1212 350 aa, chain - ## HITS:1 COG:lin2298 KEGG:ns NR:ns ## COG: lin2298 COG1173 # Protein_GI_number: 16801362 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Listeria innocua # 16 350 6 344 344 353 55.0 3e-97 METVNKNNLPQAIKDIPADEFQPLNTSTLKERERIATPSLSFLQDSWRRLKKNKAAVISM SFLAVIIFISIITIWVSPHNPTKQNVSYINLPPRIPGLESVNGLNGKTTVAGQLVDKYAQ ANVPDNVNFYLGTDGLGRDVLSRLFMGTRISLLIAFIAAILDITIGVTYGLISGLVGGRV DTVMQRILEVLSGIPNLVVMILMLTVFDPGIVSIVLAMVITNWISMARIVRAQTMKLKDQ EFVMAAETLGESRWKIAIKHILPNISSVIIVQMMFSIPSAIFFEAFLSFIGLGLRPPTAS LGTLLNEGYKTFRFLPYLMWIPAATLSVIMICFNLLADGLRDAFDPKMKE >gi|307679240|gb|GL457007.1| GENE 34 32350 - 33291 249 313 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 [Haemophilus parasuis 29755] # 9 303 6 310 320 100 25 2e-20 MNSFGKYFLKRIFFMIITLWLIATITFFLMQLLPGTPYTNQEKLSPETIAMLNKQSGLDK PVIVQYGIYLKNLVTGNFGISFQFKNQPVAKLLAGRIGPSLQLGGQAIIFGTLVGILLGI IAAMRQNTWVDTLATLLAILGRSIPNFVFAVLLQYIFAMKLRILPIAMWNGFAYTILPTI ALAMSPMADSARFIRTEMVEVLHSDYVELAKAKGLSRWQVAFRHGLRNSLIPLITLLGPL AVGLMTGSLVVENIFAIPGIGEQFVKSIMTNDYPTIMAVTILYSTMLVVVILIVDLLYGL IDPRIRVSGGAKG >gi|307679240|gb|GL457007.1| GENE 35 33382 - 33732 290 116 aa, chain + ## HITS:1 COG:no KEGG:EF0908 NR:ns ## KEGG: EF0908 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 116 1 116 116 169 99.0 4e-41 MKTFKWPIITAVISSIGIFLYLLISKEPITTSSLSDTFFIVSLFFLIIGIALWIMSSGFF DNFQRSMKNAFRFKKKNEPKEFIPLSVIGDAHRSFWLKTGGILLILSLGFLLFYLV >gi|307679240|gb|GL457007.1| GENE 36 33811 - 35481 2261 556 aa, chain - ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 22 556 22 559 559 442 44.0 1e-124 MKLKKSLTFGVITLFSVTTLAACGGGGTSDSSSASGGGKASGEQVLRVTEQQEMPTADLS LATDRISFIALNNVYEGIYRLDKDNKVQPAGAAEKAEVSEDGLTYKIKLNKDAKWSDGKP VTANDYVYGWQRTVDPATASEYAYLYASVKNGDAIAKGEKDKSELGIKAVSDTELEITLE KATPYFDYLLAFPSFFPQRQDIVEKYGKNYASNSESAVYNGPFVLDGFDGPGTDTKWSFK KNDQYWDKDTVKLDSVDVNVVKESPTALNLFQDGQTDDVVLSGELAQQMANDPAFVSQKE ASTQYMELNQRDEKSPFRNANLRKAISYSIDRKALVESILGDGSIEPNGLVPADMAKDPS GGKDFAKEAGSQIEYDTKKAKEYWEKAKKELGISTLTMDILSSDADSSKKTVEFVQGSIQ DALDGVKVTVSPVPFSVRLDRSNKGDFDAVIGGWSADYADPSSFLDLFASDNSYNRGRYN NPEFDKFVKAASSADATDPEKRWDDMLNAEKTIMGDMGVVPLFQKSEAHLRAEKVKDVAV HPAGATYDYKWAYISE >gi|307679240|gb|GL457007.1| GENE 37 35726 - 36799 1065 357 aa, chain + ## HITS:1 COG:Cj0557c KEGG:ns NR:ns ## COG: Cj0557c COG1289 # Protein_GI_number: 15791918 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Campylobacter jejuni # 20 329 28 337 361 113 28.0 6e-25 MKNSTFLKDLFAIDKANDELFRLVGVAICMAIPLLIGYFSNNLLIGTFGSMGIYTFIYYQ PLPLPQLLRRLNIVGFFIVLGNSLGMLSHHVPWLIPITIAIVAFLARLLFRLYGIEKPGA LLVIMSTAMGTSNNFPLHKIPIMASFVLLGVVTGIIMGIVLHFIDKRPYVFQKRMSLQER LYIDPASLLDALHYAAILFLAAYLSQSLHLVNAYWMTFTCAAILQGENLHSVMQRNVQRI LGTSLGLLLSAILLMIPFTPLQTIGIISILYAAFEGFINRNYAIASFFITPMSLLLSNLA RQQVISNLLNYRLVGIVLGSLLGFAGAYVFTTALRFYNRAYSIDETFENQQEERGVL >gi|307679240|gb|GL457007.1| GENE 38 36796 - 37431 487 211 aa, chain + ## HITS:1 COG:BS_yisX KEGG:ns NR:ns ## COG: BS_yisX COG1357 # Protein_GI_number: 16078153 # Func_class: S Function unknown # Function: Uncharacterized low-complexity proteins # Organism: Bacillus subtilis # 9 210 9 211 212 114 29.0 2e-25 MKITYPLPPNLPEQLPLLANCQLEDEAILENHLYQQIDLSNQEVRNLVFRDAVFDHLSLA NGQFASFDCSNVRFEACDFSNVEWLSGSFHRVTFLRCNLTGTNFADSYLKDCLFEDCKAD YASFRFANFNLVHFNQTRLVESEFFEVTWKKLLLEACDLTESNWLNTSLKGLDFSQNTFE RLTFSPNYLSGLKVTPEQAIYLASALGLVIT >gi|307679240|gb|GL457007.1| GENE 39 37701 - 38645 1065 314 aa, chain + ## HITS:1 COG:lin0010 KEGG:ns NR:ns ## COG: lin0010 COG1577 # Protein_GI_number: 16799089 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Listeria innocua # 9 307 4 301 322 213 42.0 5e-55 MNIKKQGLGQATGKIILMGEHAVVYGEPAIAFPFQATEITAVFTPAKTMQIDCAYFTGLL EDVPQELANIKEVVQQTLHFLKEDTFKGTLTLTSTIPAERGMGSSAATAVAIVRSLFDYF DYAYTYQELFELVSLSEKIAHGNPSGIDAAATSGADPLFFTRGFPPTHFSMNLSNAYLVV ADTGIKGQTREAVKDIAQLAQNNPTAIAETMKQLGSFTKEAKQAILQDDKQKLGQLMTLA QEQLQQLTVSNDMLDRLVALSLEHGALGAKLTGGGRGGCMIALTDNKKTAQTIAQTLEEN GAVATWIQSLEVKK >gi|307679240|gb|GL457007.1| GENE 40 38645 - 39640 1111 331 aa, chain + ## HITS:1 COG:SA0548 KEGG:ns NR:ns ## COG: SA0548 COG3407 # Protein_GI_number: 15926269 # Func_class: I Lipid transport and metabolism # Function: Mevalonate pyrophosphate decarboxylase # Organism: Staphylococcus aureus N315 # 3 325 4 327 327 350 57.0 2e-96 MLSGKARAHTNIALIKYWGKANEEYILPMNSSLSLTLDAFYTETTVTFDAHYSEDVFILD GILQNEKQTKKVKEFLNLVRQQADCTWFAKVESQNFVPTAAGLASSASGLAALAGACNVA LGLNLSAKDLSRLARRGSGSACRSIFGGFAQWNKGHSDETSFAENIPANNWENELAMLFI LINDGEKDVSSRDGMKRTVETSSFYQGWLDNVEKDLSQVHEAIKTKDFPRLGEIIEANGL RMHGTTLGAVPPFTYWSPGSLQAMALVRQARAKGIPCYFTMDAGPNVKVLVEKKNLEALK TFLSEHFSKEQLVPAFAGPGIELFETKGMDK >gi|307679240|gb|GL457007.1| GENE 41 39643 - 40749 1134 368 aa, chain + ## HITS:1 COG:SA0549 KEGG:ns NR:ns ## COG: SA0549 COG1577 # Protein_GI_number: 15926270 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Staphylococcus aureus N315 # 1 357 1 358 358 320 44.0 4e-87 MIEVTTPGKLFIAGEYAVVEPGHPAIIVAVDQFVTVTVEETTDEGSIQSAQYSSLPIRWT RRNGELVLDIRENPFHYVLAAIHLTEKYAQEQNKELSFYHLKVTSELDSSNGRKYGLGSS GAVTVGTVKALNIFYDLGLENEEIFKLSALAHLAVQGNGSCGDIAASCYGGWIAFSTFDH DWVNQKVATETLTDLLAMDWPELMIFPLKVPKQLRLLIGWTGSPASTSDLVDRVHQSKEE KQAAYEQFLMKSRLCVETMINGFNTGKISVIQKQITKNRQLLAELSSLTGVVIETEALKN LCDLAESYTGAAKSSGAGGGDCGIVIFRQKSGILPLMTAWEKDGITPLPLHVYTYGQKEC KEKHESKR >gi|307679240|gb|GL457007.1| GENE 42 40733 - 41776 1018 347 aa, chain + ## HITS:1 COG:SA2136 KEGG:ns NR:ns ## COG: SA2136 COG1304 # Protein_GI_number: 15927926 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Staphylococcus aureus N315 # 3 340 9 345 349 319 46.0 6e-87 MNRKDEHLSLAKAFHKKKSNDFDRVRFVHQSFAESAVNEVDISTSFLSFQLPQPFYVNAM TGGSQRAKEINQQLGIIAKETGLLVATGSVSAALKDASLADTYQIMRKENPDGLIFANIG AGLGVEEAKRALDLFQANALQIHVNVPQELVMPEGDRDFTNWLTKIEAIVQAVEVPVIVK EVGFGMSQETLEKLTSIGVQAADVSGQGGTSFTQIENARRKKRELSFLDDWGQSTVISLL ESQNWQKKLTILGSGGVRNSLDIVKGLALGAKSMGVAGTILASLMSKNGLENTLALVQQW QEEVKMLYTLLGKKTTEELTSTALVLDPVLVNWCHNRGIDSTVFAKR >gi|307679240|gb|GL457007.1| GENE 43 41821 - 44418 3090 865 aa, chain - ## HITS:1 COG:SA0143_2 KEGG:ns NR:ns ## COG: SA0143_2 COG1454 # Protein_GI_number: 15925852 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Staphylococcus aureus N315 # 457 863 1 407 411 650 76.0 0 MVKTVKKEKTETVDVSSMIDELATKANVALKAMEDFTQEQVDHIVHQMAMAALDQHMPLA KMAVEETGRGIYEDKAIKNMYASEYIWNNIKHDKTVGVINKDEQTGLMEIAEPVGVVCGV TPTTNPTSTTIFKSLIALKTRNPIVFAFHPSAQKCSAEAARIVRDAAIAAGAPENCIQWI EQPSIDATSALMNHPGIAIVLATGGAGMVKSAYSTGKPALGVGPGNVPAYIEKTAKVKRA VNDLIVSKSFDNGMICASEQAVIVDKEIYASVKAEFEAHNVYFVKPNELQKLEDAVMNEG KYAVNPAIVGNSAEKIAELAGISVPKGTKILVAELEGAGPEYPLSREKLSPVLAMMKSNN AEHAFELCEAMLNLGGLGHTAVIHTEDEELQVAFGLRMKACRILVNTPSAEGGIGNIYNE MIPSLTLGCGSYGKNSVSKNVSAINLINIKTVAKRRNNMQWFKLPPKIFFEKNSLQYLQK MENVERVMLVCDPGMVQFGYADIVRKELQKRKNDVKIEVFSDVEPNPSTNTVYAGTKMMV DFQPDTVIALGGGSAMDAAKGMWMFYEHPDTEFFGAKQKFLDIRKRTYKIAKPEKTQFVC IPTTSGTGSEVTPFAVITDSETHVKYPLADYALTPDVAIVDPQFVMSVPASVTADTGMDV LTHAIESYVSVMASDYTRGLSLQAIKLVFDHLENSVKRPDMESREKMHNASTMAGMAFAN AFLGICHSIAHKIGGEYGIPHGRTNAILLPHIIRYNAKDPSKHAMFPKYDYFRADTDYAD IAKFLGLKGNTTAELVEALATAVADLGKSVGIDMNLKAQGVSQETLDTTVDRMAELAYED QCTTANPKEPLISELKQIILDAYVG >gi|307679240|gb|GL457007.1| GENE 44 44576 - 44863 329 95 aa, chain - ## HITS:1 COG:no KEGG:EF0899 NR:ns ## KEGG: EF0899 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 95 1 95 95 158 97.0 6e-38 MTMEKLSWLQQKMLNKSIKKKCQNFRELGYSSINEEDLLTYLLTYRWKKQTHLSVKDCRK DIQKVKPNEFFDYQQLLAQTSKNPLRDWHDIEDLF >gi|307679240|gb|GL457007.1| GENE 45 45294 - 45671 597 125 aa, chain - ## HITS:1 COG:L184708 KEGG:ns NR:ns ## COG: L184708 COG1862 # Protein_GI_number: 15674113 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YajC # Organism: Lactococcus lactis # 4 114 3 106 110 76 52.0 1e-14 MGGGFTMIFTLVLLGGMMFFMTRSQKKQQQERQKQLNAMKTGDSVVTIGGLHGVLSEINE KTVLIDCEGIVLEFDRAAIRTVTPGTAVTNDSAVTSVPVTEVEETVTEEVTEVPETSDPS KEKKD >gi|307679240|gb|GL457007.1| GENE 46 45753 - 46898 1392 381 aa, chain - ## HITS:1 COG:SP2058 KEGG:ns NR:ns ## COG: SP2058 COG0343 # Protein_GI_number: 15901878 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Queuine/archaeosine tRNA-ribosyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 376 1 376 380 682 83.0 0 MTEPAIRYRLIKKDKHTGARLGELITPHGTFPTPMFMPVGTLATVKTMSPEELKEMGAGV ILSNTYHLWLRPGEDLVEEAGGLHKFMNWDQPILTDSGGFQVFSLSDMRKIEEEGVHFRN HLNGSKMFLSPEKAINIQNKLGSDIMMSFDECPPFDESYEYVKRSIERTSRWAERGLKAH ANPDRQGLFGIVQGAGFEDLRRQSAKDLVSMDFPGYSIGGLSVGESKEEMNRVLDFTTPL IPENKPRYLMGVGAPDSLIDGVIRGIDMFDCVLPTRIARNGTCMTSQGRLVVKNAQYARD FRPLDEKCDCYVCRNYTRAYIRHLIKCDETFGIRLTSYHNLYFLLDLMKNVRQAIMDDNL LEFRQAFFEEYGFNKANAKSF >gi|307679240|gb|GL457007.1| GENE 47 47057 - 48145 1254 362 aa, chain - ## HITS:1 COG:lin1848 KEGG:ns NR:ns ## COG: lin1848 COG0371 # Protein_GI_number: 16800915 # Func_class: C Energy production and conversion # Function: Glycerol dehydrogenase and related enzymes # Organism: Listeria innocua # 1 362 2 364 368 400 53.0 1e-111 MEQSLIVRGTPQEYLCEIGSWELLEGQLLCRNIHRVFILHGTESWQAAKPYFPTFQKVTA VFENYGGVCTDQRVQELEAQVLDNHLEAIVAVGGGKVADLGKALAHKMALPVIILPTLAA TCAPCTPLSVMYREDGAMERYDVFPQANALVLVEPRVLLHSPRSLMVAGIGDTLAKWYEA DAIISQLDVQVLPIQVSHFAAEKCRDILLNESINALKAMEEQQLNQSFIDVIETNLIIGG MVGGFGDDYGRTAGAHSIHDALTLLPASHRQLHGNKVAYGVFVQLAIEEKWQEIAELIPF YHQLGLPISLKEMDMDLTEAEYQEVAERACIEGETIHYMKQKITPEIVKTAMQDLEKYTA TK >gi|307679240|gb|GL457007.1| GENE 48 48160 - 48279 81 39 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315149655|gb|EFT93671.1| ## NR: gi|315149655|gb|EFT93671.1| alcohol dehydrogenase [Enterococcus faecalis TX0012] # 1 39 1 39 407 67 79.0 5e-10 MYKNLLCYDVVYHIIEYVKGKVVELKKYNFFKKIFKSQK >gi|307679240|gb|GL457007.1| GENE 49 48334 - 49797 1862 487 aa, chain + ## HITS:1 COG:lin2352_1 KEGG:ns NR:ns ## COG: lin2352_1 COG0834 # Protein_GI_number: 16801415 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Listeria innocua # 5 271 3 271 271 313 62.0 7e-85 MTKCKKWLQTILPILFLLLSLLPIKETFAAENDPVYDKIIQKGELVVGLSADYAPYEFHA KVDGEDKIVGFDISIAQKIADDLGVKLKIEELGFDALLGALKTGKIDMVISGMSPTPERL KEVAFSQPYMNVQQRVIVRKEDKDKFHSTKDFEGVRAGAQKQTTQEELIKTELTGAVPTS LQKIPDLIMNLKNNKLDAVVMEEPVGEAYVSQNEDLAFADVTFEKGSKDTAVAFPKDAPV LTEKVNASIKQINDQKLMDGYKKEANQLMFQKDQRFLQKYGKFYLNGAGYTIFLAFIGVL FGAILGALLALMKLANSKILRGIAIAYIEYVRGTPLLVQIFIVYFGTGVLGLDLSKVAAG CIALSLNSGAYVAEIIRAGIQAVNKGQLEAARSLGMNQNQAMRYIIFPQAIKNILPALGN EFVTVIKESSVVSVIGVSELIFQAGNVQGASFKPFLPYLIVSLIYFVLTFTISRLLGVAE RRMSTSD >gi|307679240|gb|GL457007.1| GENE 50 49790 - 50512 633 240 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 239 1 242 245 248 52 5e-65 MINIKNLQKTFGKNEVLKGIDLEIEAGEVVVIIGPSGSGKSTFLRCLNLLETPTGGSVEF EGKNLLDKNTNIDQLRQKMGMVFQNFNLFPHKNVLENLTISPVKVKKEAASEATEHALSL LEQVGLSDKKENYPSQLSGGQQQRVAIARALAMRPDVMLFDEPTSALDPEMVGEVLSVMK NLAIEGMTMVVVTHEMGFAKEVADRVIFMDAGIIQEEGTPEEIFDAPQNPRTQDFLRKVL >gi|307679240|gb|GL457007.1| GENE 51 50528 - 51682 1278 384 aa, chain + ## HITS:1 COG:lin2354 KEGG:ns NR:ns ## COG: lin2354 COG0436 # Protein_GI_number: 16801417 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Listeria innocua # 1 383 2 383 383 490 63.0 1e-138 MDRKNIATRYQQPTENLLMDIATLAKKTPNLIDLSIGDPDLITDERIIEQAANDAKNGHT KYTASDGSEAFIEAVIQFYQSHYQLSFQPNQVRATVGALHGMYLALQVILNPGDEVIIHE PYFSPYKDQVLLADGVPVFLPTYEEDGFQIDVALLKEKITPKTKAIILNSPNNPTGAVFS EETFREIAQVAIEHNLYILSDEVYEAFCFQETFTPMATFAPENTITFGSFSKAFAMTGWR IGYMIAPDYINEVAKLINEGVTYSAPTLSQQAGIYALQHFDEFVDPIVEVFQTRLEYVAQ RVAKIPFLSLHPVKGSIYAFINIQKTGLTSVPFVEKLLKETQVLVIPGKAFGETTGDEYI RLAATQNLDLLKEAFDRIERMTFE >gi|307679240|gb|GL457007.1| GENE 52 51730 - 52041 472 103 aa, chain - ## HITS:1 COG:no KEGG:EF0890 NR:ns ## KEGG: EF0890 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 103 1 103 103 170 98.0 2e-41 MTEKLAVFTGNLAEAGVLNETQPLSMRLHLENIQAESNPESIVPLFSHGVILNILVEQLE ESIPLSHLKKGTKVRFTVVGLPPMTMSIPPHVGGQAIELIEEI >gi|307679240|gb|GL457007.1| GENE 53 52057 - 52905 1013 282 aa, chain - ## HITS:1 COG:lin0535 KEGG:ns NR:ns ## COG: lin0535 COG2199 # Protein_GI_number: 16799610 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Listeria innocua # 4 282 2 284 284 120 27.0 3e-27 MNQKRVTLLLDLTLLVGIVLVVGTTIFMALGTNDFFVDLSCLLISVILIIVTYFVGITAG LTFSLIFIFLQLTYVVYQYVYHDLFSYGSLFWLIMPPLYCLTIYAVTYQIRTIEEENIRL RKETSRLNALDAVTNLRTAKMYEEGFDLFSDISTRYEAPLYLVVIRVAYWESIRNLLSPE QKNELLQIVTAAIKETTDDRFLPYFIDGTPPTWALLIFRDGDDGYTTRKEFKQQAQEKFA HSETLRNITLTLQVSYTKYDPAEFNNASEFLGDGINSLQYDV >gi|307679240|gb|GL457007.1| GENE 54 52907 - 54973 1829 688 aa, chain - ## HITS:1 COG:no KEGG:EF0888 NR:ns ## KEGG: EF0888 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 688 1 688 688 1274 99.0 0 MKQKTVTLIGVFFLAILIGVASPTVYAENKEQDNHTFTQPFQNKTISLTGTSVRSTMYFT KIDYWDVKKASFNMTYQITQLKNNQTSDLTVAVNGVKFYSWRPENTTGIQQKTIEIPLEL IKETNTLTVEGQIINQAGNDMYNLIETPANWLTMYEGSNVNFQYDLQLPENTIHSFYNHF VGADTIANKHSVILTPENASEKELAAATHALAGAARLITTSEELLPMASLNKEQSAPYQL IIASYDKLPDQYKSQIDSKRVEDQAVLKFFNQPDKHVLVATSKDEDLLVRAGRYLANYEL MTQTDKEETTVDENTDTFSSTLEFDGNYPLTSTGDKLEGAYHQEQTYFVNLPVDRNNANG SRVHLHFKYAENLDFDSSLVTVYANDKPIGSKKLTAARANGDELNLEFPKNLEIADSFVL KVAFDLNVKSPEVLRNGQTPWAFIENNSNVFIQTEELNDILFNNYPNIFIRSRSFADLAI LLPEKMDDNYFKVLTNLFNLIGNYAESNVGEITYYKKAPKNAALENHNLIIFGTPKDNPM IRKLNDQLYFHYDKDFTRFVSNEKLSIEKDYGKQIGTAQLMFSPYNAKAAALILTGAKSQ GVFLASTQVNTEKNTSMYKGDAIVVDSNYRRYDYRFKKRVSNVSNESLGKRIVNNHKLMI YLFVFLIGMTIIGLSAFFIVKKNLKGGE >gi|307679240|gb|GL457007.1| GENE 55 54988 - 56178 938 396 aa, chain - ## HITS:1 COG:lin0533 KEGG:ns NR:ns ## COG: lin0533 COG1215 # Protein_GI_number: 16799608 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Listeria innocua # 9 395 33 416 416 551 70.0 1e-157 SNLILQFAYLKTDPVAPPPVEDEDAPFVSIMVPAHNEGIVIVRTVEALLNFNYPQDRYEI IVINDNSSDNSAELLANVQKKAVNRNLQIINTDNITGGKGKSNALNIGFKQAKGDVIAIY DADNTPEPNALRYLVGELIASEEYGAVIGKFRTRNRNASLLTRFINIETLAFQWMAQAGR FQLFKLCTIPGTNFIVRRSIIEAIGGWDDKALAEDTEISFRIYMMGYKIKFQPKAVTWEQ EPQTLSVWFRQRTRWVKGNIYVIVKNAKLLFNPKASRIRFDILYFLSIYFLLMTSLVLSD IMLVLSMSGYLTTTLQGFSNSLWLLAILLFIFSTFVSITTEKGEMTLENILIIALMYITY SQMWLVVAAYGMVMYIKENVFHKQTQTKWYKTERFK Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:23:00 2011 Seq name: gi|307679239|gb|GL457008.1| Enterococcus faecalis TX2141 genomic scaffold Scfld48, whole genome shotgun sequence Length of sequence - 1770 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 55 - 108 11.1 1 1 Tu 1 . - CDS 148 - 1446 1312 ## LAF_0672 hypothetical protein - Prom 1518 - 1577 7.2 Predicted protein(s) >gi|307679239|gb|GL457008.1| GENE 1 148 - 1446 1312 432 aa, chain - ## HITS:1 COG:no KEGG:LAF_0672 NR:ns ## KEGG: LAF_0672 # Name: not_defined # Def: hypothetical protein # Organism: L.fermentum # Pathway: not_defined # 55 426 48 419 423 441 58.0 1e-122 MKHTHKIILAVTSVCTVIILGVSIFFVTQAATNNKLENTSQTTQHSSSSSKPVEDKQTTK QLDQAKQLAASYHYDEAIALLEKDDAKEAQQLLATLKKEKESLVKWEDPTKISHVFFHSL IVDPAKAFHTQQAQGYKDYMVTISEFNKTIDQLYKNNYVLVNLNGLVKKGTDGKLTFTGV SLPEGKKPLILSQDDVSYYEYMDNSGFPSKLIVDKQNQIKNIYIDNKKETVGDYDMVPLI DSFIKKHPDFSYQGAKGTLALTGYNGVLGYRTSKSEYGDNEKTNKEIEAAKKVADQLKKD GWSFASHTWGHLNMTQASLADIQQDNERWQSEVAPILGKTNILIYPFGADISDWQPYSEA NQKFAYLKQQGFDIFCNVDASTPAWGQLGTDYYRNARINIDGIRFEADLKGENPILDQFI NVKEVYDQKDRG Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:23:19 2011 Seq name: gi|307679238|gb|GL457009.1| Enterococcus faecalis TX2141 genomic scaffold Scfld49, whole genome shotgun sequence Length of sequence - 44292 bp Number of predicted genes - 51, with homology - 49 Number of transcription units - 23, operones - 8 average op.length - 4.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 38 - 97 7.9 1 1 Tu 1 . + CDS 298 - 465 375 ## EF2784 hypothetical protein + Term 509 - 548 2.4 - Term 540 - 588 16.5 2 2 Op 1 . - CDS 628 - 2466 1687 ## EF2785 hypothetical protein 3 2 Op 2 . - CDS 2480 - 2830 576 ## COG3189 Uncharacterized conserved protein - Prom 2850 - 2909 1.8 - Term 2905 - 2942 6.4 4 3 Op 1 2/0.000 - CDS 2952 - 3350 579 ## COG0607 Rhodanese-related sulfurtransferase 5 3 Op 2 5/0.000 - CDS 3366 - 4337 1107 ## PROTEIN SUPPORTED gi|116517028|ref|YP_816079.1| glucokinase 6 3 Op 3 3/0.000 - CDS 4338 - 4556 426 ## COG4483 Uncharacterized protein conserved in bacteria 7 3 Op 4 4/0.000 - CDS 4574 - 5284 728 ## COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) 8 3 Op 5 . - CDS 5295 - 5837 665 ## COG0212 5-formyltetrahydrofolate cyclo-ligase - Prom 5857 - 5916 4.0 9 3 Op 6 . - CDS 5925 - 6695 735 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 6826 - 6885 5.3 + Prom 6779 - 6838 6.9 10 4 Tu 1 . + CDS 6861 - 7436 715 ## COG3152 Predicted membrane protein + Term 7450 - 7483 3.1 + Prom 7438 - 7497 8.0 11 5 Op 1 . + CDS 7542 - 9092 562 ## EF2794 hypothetical protein 12 5 Op 2 . + CDS 9113 - 10177 720 ## EF2795 LysM domain-containing protein 13 5 Op 3 . + CDS 10305 - 10928 628 ## HMPREF9243_0197 hypothetical protein + Term 10966 - 11015 16.5 14 6 Tu 1 . - CDS 11006 - 12070 595 ## EF2796 hypothetical protein - Prom 12258 - 12317 5.4 - Term 12237 - 12289 4.2 15 7 Tu 1 . - CDS 12326 - 12577 451 ## EF2797 hypothetical protein - Prom 12606 - 12665 6.1 - TRNA 12667 - 12756 62.4 # Ser CGA 0 0 + Prom 12408 - 12467 6.5 16 8 Tu 1 . + CDS 12690 - 12779 61 ## + Term 12861 - 12908 1.6 - Term 12792 - 12839 8.3 17 9 Op 1 . - CDS 12852 - 13001 267 ## PROTEIN SUPPORTED gi|29377324|ref|NP_816478.1| ribosomal protein L33 - Prom 13049 - 13108 5.8 18 9 Op 2 . - CDS 13127 - 15262 2461 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 - Prom 15321 - 15380 8.7 - Term 15366 - 15413 15.2 19 10 Tu 1 . - CDS 15427 - 17364 2560 ## COG0441 Threonyl-tRNA synthetase - Prom 17473 - 17532 6.5 20 11 Tu 1 . - CDS 17761 - 17940 291 ## COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog - Prom 17970 - 18029 6.6 - Term 18000 - 18048 7.1 21 12 Tu 1 . - CDS 18106 - 19551 1393 ## COG1376 Uncharacterized protein conserved in bacteria - Prom 19628 - 19687 4.8 22 13 Tu 1 . - CDS 19698 - 20561 718 ## EF2861 aminoglycoside 6-adenylyltransferase - Prom 20736 - 20795 5.6 + Prom 20593 - 20652 9.5 23 14 Tu 1 . + CDS 20683 - 21264 588 ## COG1434 Uncharacterized conserved protein + Term 21267 - 21315 15.6 + Prom 21303 - 21362 4.0 24 15 Tu 1 . + CDS 21422 - 22366 1212 ## EF2863 endo-beta-N-acetylglucosaminidase + Term 22404 - 22449 5.6 + Prom 22391 - 22450 4.2 25 16 Tu 1 . + CDS 22507 - 22584 87 ## - Term 22459 - 22493 4.3 26 17 Tu 1 . - CDS 22645 - 23463 550 ## EF2864 hypothetical protein - Prom 23623 - 23682 7.7 - Term 23629 - 23681 16.5 27 18 Op 1 . - CDS 23710 - 24429 1035 ## COG0217 Uncharacterized conserved protein - Prom 24453 - 24512 3.4 28 18 Op 2 3/0.000 - CDS 24516 - 25694 758 ## COG1323 Predicted nucleotidyltransferase - Prom 25716 - 25775 4.8 - Term 25724 - 25762 -0.7 29 18 Op 3 6/0.000 - CDS 25784 - 26524 854 ## COG0500 SAM-dependent methyltransferases 30 18 Op 4 6/0.000 - CDS 26526 - 26675 145 ## COG0799 Uncharacterized homolog of plant Iojap protein - Prom 26776 - 26835 3.5 31 18 Op 5 9/0.000 - CDS 26911 - 27501 1011 ## COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism 32 18 Op 6 7/0.000 - CDS 27479 - 28138 584 ## COG1057 Nicotinic acid mononucleotide adenylyltransferase 33 18 Op 7 2/0.000 - CDS 28156 - 28467 286 ## PROTEIN SUPPORTED gi|15901580|ref|NP_346184.1| hypothetical protein SP_1748 34 18 Op 8 6/0.000 - CDS 28491 - 29600 1432 ## COG1161 Predicted GTPases 35 18 Op 9 . - CDS 29597 - 30124 650 ## COG2179 Predicted hydrolase of the HAD superfamily - Prom 30154 - 30213 6.0 - Term 30277 - 30327 3.1 36 19 Op 1 10/0.000 - CDS 30334 - 31122 974 ## COG0825 Acetyl-CoA carboxylase alpha subunit 37 19 Op 2 4/0.000 - CDS 31124 - 31990 728 ## COG0777 Acetyl-CoA carboxylase beta subunit 38 19 Op 3 4/0.000 - CDS 32046 - 33416 1592 ## COG0439 Biotin carboxylase 39 19 Op 4 4/0.000 - CDS 33424 - 33849 565 ## COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases 40 19 Op 5 4/0.000 - CDS 33853 - 34341 634 ## COG0511 Biotin carboxyl carrier protein 41 19 Op 6 11/0.000 - CDS 34343 - 35578 1630 ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase 42 19 Op 7 26/0.000 - CDS 35597 - 36334 214 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 43 19 Op 8 3/0.000 - CDS 36338 - 37267 1177 ## COG0331 (acyl-carrier-protein) S-malonyltransferase 44 19 Op 9 . - CDS 37300 - 38256 1094 ## COG2070 Dioxygenases related to 2-nitropropane dioxygenase - Prom 38330 - 38389 1.8 45 20 Op 1 . - CDS 38393 - 38620 497 ## EF2884 acyl carrier protein 46 20 Op 2 4/0.000 - CDS 38673 - 39638 1023 ## COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III 47 20 Op 3 . - CDS 39654 - 40094 583 ## COG1846 Transcriptional regulators - Prom 40136 - 40195 4.5 - Term 40409 - 40460 8.7 48 21 Tu 1 . - CDS 40484 - 40714 302 ## EF2888 hypothetical protein - Prom 40742 - 40801 7.0 49 22 Tu 1 . - CDS 40815 - 41705 1235 ## COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases - Term 41719 - 41774 11.9 50 23 Op 1 25/0.000 - CDS 41778 - 43001 1381 ## COG0438 Glycosyltransferase 51 23 Op 2 . - CDS 43048 - 44043 1164 ## COG0438 Glycosyltransferase - Prom 44190 - 44249 7.5 Predicted protein(s) >gi|307679238|gb|GL457009.1| GENE 1 298 - 465 375 55 aa, chain + ## HITS:1 COG:no KEGG:EF2784 NR:ns ## KEGG: EF2784 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 55 1 55 55 72 100.0 5e-12 MKKFVSGMLVGTAITVAALAGVATTIKKTVIDPIEEKEDMIEENRKKAMRKRIAR >gi|307679238|gb|GL457009.1| GENE 2 628 - 2466 1687 612 aa, chain - ## HITS:1 COG:no KEGG:EF2785 NR:ns ## KEGG: EF2785 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 612 1 612 612 1234 99.0 0 MKIAIVGAGPRGLSAAERVIEWARKTEINVQLTLFDPYGPGGKIWRAEQPNYLLMNTVIS QVTLFTDESFSGEGPIVKGPTLYEWTQTEAAQYIQQQQPYNYLELLKECHRLGPNDHCSR AFYGMYQKWFYTYLATRCNEQTSLTFFKEPVTAVRAGEDNYYVYTQSIEFTADKVILALG HQENELTTVEQELADYAKEHRLFYSSPKNAADALLALANIPAKQPVVLKGLGLAFFDYLS ALTIGRGGVFSRQNGRLRYEPSGREPIIIAGSGRGFPSHPRGNNQKGYGETYQPVFLTET YLAECHKKGQVTGAEFFGYLKKEVEYVYYTCLIEEKYPHLSKEAFQQLFIQTKGAPESLA HFEKQDWFDWQALEHPETKKTTHESFRSFLLEYLKWDIQEAEKGNLSGPLTTALDSLKDL RDQIRFVLDEGLLTNDESQKWLWHWFTPLYTFLSVGPSVERTEELQALVELGLVTILGPE MRVEMKAGQFITYANLFPENRYNSHFLIEARIPKVNNEKSLNPLTRQLLADKLATLHQLA LADGQIVKTGALLIVPATNQVMTKDGQVATGLFSCGIPTEGIHWLTAAAARPGVDPWNMR DMDRIAATIFNS >gi|307679238|gb|GL457009.1| GENE 3 2480 - 2830 576 116 aa, chain - ## HITS:1 COG:BMEII0787 KEGG:ns NR:ns ## COG: BMEII0787 COG3189 # Protein_GI_number: 17989132 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Brucella melitensis # 2 116 4 115 116 115 53.0 1e-26 MIQIKRAYEAPTEQDGYRVLVDRIWPRGKSKESEKLDEWLKEVAPSTELRKWFNHEANKY PEFKQKYQEELKHEPTATAFKQLQTIVKNQPVVTLVYGAKDTVHNQAVVLKELLEK >gi|307679238|gb|GL457009.1| GENE 4 2952 - 3350 579 132 aa, chain - ## HITS:1 COG:lin1388 KEGG:ns NR:ns ## COG: lin1388 COG0607 # Protein_GI_number: 16800456 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Listeria innocua # 22 130 18 126 126 117 55.0 5e-27 MSILWVINGILLVIVLAMVFNELYLKIMVKRSAKMLTEEEFKETMRKAQVIDVREKDTFD AGHILGARSMPYSMLKTTIGSLRKDQPVYLYDQKKALSIRAANLLRKNGYTDIYILKGGY DGWTGKVKKRNS >gi|307679238|gb|GL457009.1| GENE 5 3366 - 4337 1107 323 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116517028|ref|YP_816079.1| glucokinase [Streptococcus pneumoniae D39] # 1 318 1 319 319 431 65 1e-120 MDKKIIGIDLGGTTIKFAILTTDGVVQQKWSIETNILEDGKHIVPSIIESIRHRIDLYNM KKEDFVGIGMGTPGSVDIEKGTVVGAYNLNWTTVQPVKEQIESALGIPFALDNDANVAAL GERWKGAGENNPDVIFITLGTGVGGGIVAAGELLHGVAGCAGEVGHVTVDPNGFDCTCGK RGCLETVSSATGVVRVARHLSEEFAGDSELKQAIDDGQDVSSKDVFEFAEKGDHFALMVV DRVCFYLGLATGNLGNTLNPDSVVIGGGVSAAGEFLRSRVEKYFQEFTFPQVRNSTKIKL AELGNEAGVIGAASLALQFSKEK >gi|307679238|gb|GL457009.1| GENE 6 4338 - 4556 426 72 aa, chain - ## HITS:1 COG:SPy1530 KEGG:ns NR:ns ## COG: SPy1530 COG4483 # Protein_GI_number: 15675429 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 66 1 66 67 67 57.0 9e-12 METLYDVQQLFKQFGMYIYVGARIYDIELMMIELKKLYEGQLVDRDTYLQARHILQREHR IEESREKQKGID >gi|307679238|gb|GL457009.1| GENE 7 4574 - 5284 728 236 aa, chain - ## HITS:1 COG:lin1374_1 KEGG:ns NR:ns ## COG: lin1374_1 COG0705 # Protein_GI_number: 16800442 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein (homolog of Drosophila rhomboid) # Organism: Listeria innocua # 6 183 173 345 345 137 41.0 2e-32 MNYQTEMKLKRLKNQPFITYALLGISIIVFLGLELTGGSENILNLVNWGAMVRPLVAQNH EYWRFITPMFLHIGFMHIILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGNIASFAFG TPNSVSAGASTALFGLFGAFVILGRHFRDNPAIMYMVQRYSMFIVINLLFNLFSSSVDMM GHVGGLIGGLLVATAFAVPNREEAFNKHERIMATLIFIFLVVICLLLGFKKYGLPV >gi|307679238|gb|GL457009.1| GENE 8 5295 - 5837 665 180 aa, chain - ## HITS:1 COG:lin1373 KEGG:ns NR:ns ## COG: lin1373 COG0212 # Protein_GI_number: 16800441 # Func_class: H Coenzyme transport and metabolism # Function: 5-formyltetrahydrofolate cyclo-ligase # Organism: Listeria innocua # 25 177 22 176 179 117 42.0 1e-26 MEKNKLRKVGLTALEWLKQHPEIKQHKESSLYEQLFASQQWQQAQTIGMIRSLPLELSTQ PIFERAMQESKQVAVPRTFKGGKMHFYQVFPETVYDTSAFGVEEPPLTAAEITATAIDLL IVPGIVFNRAGYRIGFGGGFYDRYLEHFSGHSCSLVFSEQLHEQWQPEAFDQPIEQLFIQ >gi|307679238|gb|GL457009.1| GENE 9 5925 - 6695 735 256 aa, chain - ## HITS:1 COG:lin2363 KEGG:ns NR:ns ## COG: lin2363 COG1073 # Protein_GI_number: 16801426 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Listeria innocua # 3 249 2 248 250 168 36.0 1e-41 MKISIRHRYIAKIPALEVTTEEQRNEALPLIVYYHGWQSAKELSLTQARKLAHEGFRIIL PDAMNHGERKTGPISTIPSITFWSSIQYNLIEFPVIIHHFHKLGLIKENWIGVGGVSMGG ITTSALMTQHPEIQAAACLMGTPYPARYIQRVIQRAKEFAIFVPKDLPLLLSWVHQYDLS QTPERLQERPMLFWHGTEDEKIPYEDMADFEQLVSGKTYARNTQFITEIGERHLVKGETM DLVVDFFKEASKTLEK >gi|307679238|gb|GL457009.1| GENE 10 6861 - 7436 715 191 aa, chain + ## HITS:1 COG:L133792 KEGG:ns NR:ns ## COG: L133792 COG3152 # Protein_GI_number: 15673282 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 8 185 3 169 175 62 30.0 5e-10 MVKIEEKGKVTFGQAFKDYFRGYVDFKGRTTRAGYWWMTLVLSILALIFYIAIVGKAVSA ILAAEYFETYDFGNLLPLMLFALILWLALLLPTWAMCVRRYRDAGMTGWGVLVLYLLSIA CSYTQVFSVMSTFKYDVQTDTVITGGSPVFLFFTLVISLFFFLLTVLPTDKLTTTSQNSV LRFFFRYKEVK >gi|307679238|gb|GL457009.1| GENE 11 7542 - 9092 562 516 aa, chain + ## HITS:1 COG:no KEGG:EF2794 NR:ns ## KEGG: EF2794 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 516 1 516 516 870 99.0 0 MATFKRILNLENYIFTFFILFVFYGAINSPYSLVKILWEKPKHLLVLLPLLIILLLIIYK NKKFLYTKIQALWHLIKTHDRVVIIGSLVSLFLLQLLLLTQITVPIGWDVFDNFHSITTE NRDYSKIVLSLNPNNEFFFFMMYYLNKFLRFIDVTGSWSNTWFSWQVVNCLFINSSLFLF YHASKRVFNPLTAFVAYSLFFLSFGLSPWLLTPYTDTAVLLFINLVFFAYSLFDQVSHPF VKYCLLLFIGIGLAWCFLMKPSSIIFFIAFSCIKVLQLLLVNRNKQSIVKLTVVALFLLT GFASAYYSFQFFVEKQTITEIDKEQAKPWTLFVMMGLTGTGGYNDADTQAVNQLPTQEAK KAYTIKMIQDRLKNKGFFGYLRFLAQKNRHNTANGDFDWGWDGGDLIPETPSKNRWQEHL RSLYYPQNQKSNYLRIYMHFFYLLTLLGLLFSIPLKDSKNNYAILKLAFIGAILYLLLFE GGRSRYLIQFMPFWYLLSASGWLGLREIRRYKKIVK >gi|307679238|gb|GL457009.1| GENE 12 9113 - 10177 720 354 aa, chain + ## HITS:1 COG:no KEGG:EF2795 NR:ns ## KEGG: EF2795 # Name: not_defined # Def: LysM domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 354 1 354 354 563 98.0 1e-159 MKKSLLGLIVFLSLLTLTSCRNKVTTKELMANEWAVNSNVDEVVMIVSFSEDTATFKINT DEHTSTAKNDLEKAGEELGKQIANKIEYKVKYHLKNNQIRWENEGKEVAYKIKKEKQNLL FTPTKTNNSDNQTKLVLKPYTKKSIDSSTQKDKTEETSSNYQNVSSETNQSTSSSTTKEP LPQVSLADFIGGWGIPQSDNLFFINADGTLTSITQSNVPLQNVSFSVDENGNQIMTFLLN NTPRTVTKNNDGTLTVNGQIYTYLGNITLEQLIERNNQTQQVFEQSEQQPPQNSDSSEQI QNSKSDQPIYDTVRSGEGGRQLAERNGLTLEELLALNPRIETSVFYPGQSLRIK >gi|307679238|gb|GL457009.1| GENE 13 10305 - 10928 628 207 aa, chain + ## HITS:1 COG:no KEGG:HMPREF9243_0197 NR:ns ## KEGG: HMPREF9243_0197 # Name: not_defined # Def: hypothetical protein # Organism: A.urinae # Pathway: not_defined # 75 205 90 223 225 67 26.0 3e-10 MKKMYLLSITLISLGILAGCSNNDSTKVQKLETTISSLKKENDSLKTGNTDENKKSQESK VDSKQKKEEKKYGLNEDVDLYSNSKKVGKIKLTKVSTNQSAFPDYMINLEDYDTSKMMAV TFDYTNIAMEEPFLPHSNYFQAYSKDGKALQSFNQQNGQDYVSQGRTGTSTIYFGIPVDG NSFDEVELDLVPTGSAKIATFDIAVGH >gi|307679238|gb|GL457009.1| GENE 14 11006 - 12070 595 354 aa, chain - ## HITS:1 COG:no KEGG:EF2796 NR:ns ## KEGG: EF2796 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 354 1 354 354 575 99.0 1e-162 MTFYQLLQLDPFILKQKIHQADTKKQRRYFWRALLIRDILLVSFAILWVSTITFFFGKAV APFSIVLFCLLLSIRFVSYGYREKQALLSLGIVLTILGVSPLISLISVSFLQLGLHFICL LALFFLTGKNPKMGNPGLYTFSYLYLVGTVHYQSFQQLEQTFFVLVFAYLLLAFVYHVKH KKLDQEITFIQMVTENGFFNQRNIWFGYYALGISLLLFIGTHLQIDRFMWATFASSSLFS GYDTFKLSERAKERIIGVVIGSLVSAILLFYIPTNLLGILGGLCLGLCTSYKSKTIFNCV GAIMAASMIFGLETSLYLRILLNMLGLAYGLLYHFVFVKTMSYCNRKEWLKLSE >gi|307679238|gb|GL457009.1| GENE 15 12326 - 12577 451 83 aa, chain - ## HITS:1 COG:no KEGG:EF2797 NR:ns ## KEGG: EF2797 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 19 83 1 65 65 71 98.0 1e-11 MSNYEEKEAQALVKIADVLNKLDASLEELSSLDEDTKKHSMKKWIVEKKAIHEIKKIAHE AGKYDKYDEKELEKEMDLLEKFM >gi|307679238|gb|GL457009.1| GENE 16 12690 - 12779 61 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MHDVTRLTVFETVPFSQTWVILPLHSIYK >gi|307679238|gb|GL457009.1| GENE 17 12852 - 13001 267 49 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29377324|ref|NP_816478.1| ribosomal protein L33 [Enterococcus faecalis V583] # 1 49 1 49 49 107 100 1e-22 MRVNITLECTSCKERNYLTNKNKRNNPDRLEKQKYCPRERKVTLHRETK >gi|307679238|gb|GL457009.1| GENE 18 13127 - 15262 2461 711 aa, chain - ## HITS:1 COG:SP1673 KEGG:ns NR:ns ## COG: SP1673 COG0768 # Protein_GI_number: 15901508 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Streptococcus pneumoniae TIGR4 # 27 709 9 677 680 531 42.0 1e-150 MKKNSFIDKIKKTDAAAKSQRGRKPHIPFRLNLLFFVIFTLFVSLIVRLGYLQIVEGEEF NKKITANSSLQITTPSPRGQIYDSQGKVLVSNKANLAITYTRGKNIEGKDILPIANKVNE LINVPVDPNLTDRDKKDYWLANPENLKAAQGRLTDQDKEDEKGNKITDEGTLYAKAVEKV TPEEIAFDDRTLQAVTIFKRMNAASQMNTVFIKNEGVTEGEIATIGEHTAEISGVSTGTD WTRDYSQSGALRSLLGTVSTEKQGLPAEEVDEYLKKGYARNDRVGTSYLEKQYEDVLQGK KAKSEVVLDNNGKIVSQTPISKGEKGSNLKLTIDSNFQNKVDEILQRNYSQIVKTIGPYS ENAYVVAMNPQTGAILAMSGFHHDLATGEVTPNPLAPILNSEVPGSVVKAGTLTAGYETG VIKGNDVLTDEAILLAGSNPKASWWNASGGTTMQLTAEQALEYSSNAYMMKLVFKMMGVN YYPNMIFPYEVGDDTVFKELRKAFAEYGMGTKTGIDIPGETTGIQNKDFKDSSSAPQGGN LLDLSFGQYDTYSALQLAQYVSTVANNGIRVQPHVVEGIYGNDENGALGKILKEIEPKVL NKVNISEDQIGILQQGFYNVVNGTSPFTTARGLKSDKFSIAAKTGTAETQATDANGVNHT TVNSNLVAYAPYENPEIAISVVLPHLNDESSKPNQTIAKEVLEAYMEMYKK >gi|307679238|gb|GL457009.1| GENE 19 15427 - 17364 2560 645 aa, chain - ## HITS:1 COG:SPy0517 KEGG:ns NR:ns ## COG: SPy0517 COG0441 # Protein_GI_number: 15674621 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Threonyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 3 645 2 642 647 987 74.0 0 MSIHITFPDGAVKPFDSGVTTFDVAKSISNSLAKKALAGKFNGVLIDLDRPIVEDGSLEI VTPDHEDALGILRHSSAHLMANALRRLFPNIKFGVGPAIDSGFYYDTDNGESPVTAEDLP AIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLPEDEIITVYDQGDFVDL CRGVHVPSTGRIQVFKLLSVAGAYWRGNSDNHMMQRIYGTAFFDKKDLKEFIKMREEAKE RDHRKLGKELDLFMVSQEVGSGLPFWLPKGATIRRTIERYIVDKEISLGYQHVYTPIMAD VELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDIHSYRELPIRIAEL GMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTLELMVAVYADFNITDYRF RLSYRDPNNTDKYFDDDAMWEKAQAMLKAAMDELELDYFEAEGEAAFYGPKLDVQVKTAL GMEETLSTIQLDFLLPERFDLTYVGEDGENTHRPVVIHRGIVSTMERFVAYLTEVYKGAF PTWLAPIQATIIPVSVEAHSEYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPY QLVVGDKEMEDATVNVRRYGSKETSVEDLSIFIDSMAAEVHNYSR >gi|307679238|gb|GL457009.1| GENE 20 17761 - 17940 291 59 aa, chain - ## HITS:1 COG:L168282 KEGG:ns NR:ns ## COG: L168282 COG1942 # Protein_GI_number: 15672556 # Func_class: R General function prediction only # Function: Uncharacterized protein, 4-oxalocrotonate tautomerase homolog # Organism: Lactococcus lactis # 1 59 1 59 61 65 59.0 3e-11 MPFVHVELIEGRTEEQLTNMVKDITEAVSKNAGAPKENIHVIVNELKKDRYAQGGEWKK >gi|307679238|gb|GL457009.1| GENE 21 18106 - 19551 1393 481 aa, chain - ## HITS:1 COG:CAC0747 KEGG:ns NR:ns ## COG: CAC0747 COG1376 # Protein_GI_number: 15894034 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 10 460 2 465 466 112 24.0 1e-24 MKKEEMQMRNTCRQKSGKNNKKKVIITSLVGLALVAGGSYVYFQSHFLPTTKVNGVSVGW LNVNAAEEKLAQVNQTEEVVVQTGTKEEKIQLPKKYQLDQKFLKDHLHSSKVKLPLNEAF KKELEAKLATLSFPEGKPSKNASIRRGNGTFEIVPEEQGTVVDTQRLNQQIIADVEAGKG NYQYNAKDFYKAPEITKEDQTLKATLTTLNNKLNKTITVDINGEKVAFDKTQIQNVLNDD GTINKEKLTTWVTQLETTYGSANQPVLFTDVHGTTRRFKNNGSYGWSIDGAKTQELLVNA LNSQEQTNAITVPLVGDTKENSKIANNYIEIDLKDQKMYCFIDGKKIVTTDIITGRYNKG TATVPGFHTILYRTTDVNLEGQMLDGSRYSVPVKYWMPLLSQGGVVTQIGIHDSDHKLDK YGDKEAFKTDAGSNGCINTPGTEVSKIFDVSYDGMPVIIYGHIYDDAPGEFDKPVDYGEE V >gi|307679238|gb|GL457009.1| GENE 22 19698 - 20561 718 287 aa, chain - ## HITS:1 COG:no KEGG:EF2861 NR:ns ## KEGG: EF2861 # Name: aadK # Def: aminoglycoside 6-adenylyltransferase # Organism: E.faecalis # Pathway: not_defined # 1 287 1 287 287 575 100.0 1e-163 MRTEEEMFQLIMDVAKQEEHIRAVGMVGSRTNVKAPKDSFQDFDIVYIVEPCAEFFETAT WIAKFGQPLIMQRPKEMTLFPTEPKTRETFLMLFEDGQRIDLTLCPLAEKDNWHEGDSLA IILLDKDENLPPLPVASDKNYTVTVPDQQQFNDCCNEFWWVSTYVVKGLCRNELFYAVTH LYEYCQQELLRLLSWQAAWQEPEPISVGKQFKYLKNYVTPDTMDQLASLLDFSSKEACWN SLIKTQAFFDVVAQDFAKMAQFTYHLQEAKKVTEYTNSLRLKDLQGK >gi|307679238|gb|GL457009.1| GENE 23 20683 - 21264 588 193 aa, chain + ## HITS:1 COG:lin2536 KEGG:ns NR:ns ## COG: lin2536 COG1434 # Protein_GI_number: 16801598 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 11 192 11 188 189 161 45.0 8e-40 MHWLKITSLSIVSFGFCILLILGLLIFTGKNTQPTDKPDAILILGARVLGTSKETALPSR VLQARLDVAIPYIKKHPETPVIVSGGQGADEPATEAAVMKQYLLNKGVPEKQILLENRAT RTKENIVNSQKLLSFKRLVIVTSDFHMYRSQLLAKRAGISNVSGITAASSFPKDIKNFGR ELLSLGYALLFDW >gi|307679238|gb|GL457009.1| GENE 24 21422 - 22366 1212 314 aa, chain + ## HITS:1 COG:no KEGG:EF2863 NR:ns ## KEGG: EF2863 # Name: not_defined # Def: endo-beta-N-acetylglucosaminidase # Organism: E.faecalis # Pathway: not_defined # 1 314 1 314 314 598 100.0 1e-170 MGHQLSTHFFNKKTGIISTFLSLILLVGGLLFALPAFEVQAASTVTPKTVMYVEVNNHDF NNVGKYTLAGTNQPAFDMGIIFAANINYDTVNKKPYLYLNERVQQTLNEAETQIRPVQAR GTKVLLSILGNHEGAGFANFPTYESADAFAAQLEQVVNTYHLDGIDFDDEYAEYGKNGTP QPNNSSFIWLLQALRNRLGNDKLITFYNIGPAAANSSANPQMSSLIDYAWNPYYSTWNPP QIAGMPASRLGASAVEVGVNQNLAAQYAKRTKAEQYGIYLMYNLPGKDSSAYISAATQEL YGRKTNYSPTVPTP >gi|307679238|gb|GL457009.1| GENE 25 22507 - 22584 87 25 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKCFVLLRLFVDMLISYKLNVKIL >gi|307679238|gb|GL457009.1| GENE 26 22645 - 23463 550 272 aa, chain - ## HITS:1 COG:no KEGG:EF2864 NR:ns ## KEGG: EF2864 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 272 1 272 272 430 97.0 1e-119 MLAFFVVLAVLSLTACREPKEKKVTASTEASSKVEETNEKTSETIDKTNEQASSSVESNE SVKNEESTADEDNSQLTVADLDTTAINAGDFTTLVGTWKNGKGESLIIHPDGSTNTGGMI TKDSPTDESRPITSLSIRWGPTGAALLLYRIGVENPNGDQSDKTKPRLLITQDSGNYPAE EYYYRSSEEENQDQNEEAKIIDTQEKAETYIRKTLTDAENNDTNLGFLGMNGNDFFFRAQ SKQMVANGGTGTVGFYRVSPQGAVRITDARGN >gi|307679238|gb|GL457009.1| GENE 27 23710 - 24429 1035 239 aa, chain - ## HITS:1 COG:lin0388 KEGG:ns NR:ns ## COG: lin0388 COG0217 # Protein_GI_number: 16799465 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 239 1 239 239 367 79.0 1e-101 MGRKWANIKEKKAAKDANNSRVYAKFGIEIYVAAKSGDPDPHANQKLRFVIERAKTYNVP KHIIDRAIEKAKGSADEQYSELRYEGFGPNGSMVIVDALTNNVNRTAADVRAAFGKNGGN MGVSGAVSYMFDNTGIIGFAGDDADEILEYLMEKDIDVRDVVEEDGQIIVYTEPEDFHHA QEALKEKGIEEFTVTELEMVPQNEVTLEGDDLGNFEKMLDVLEDLEDVQKVHHNVDLPE >gi|307679238|gb|GL457009.1| GENE 28 24516 - 25694 758 392 aa, chain - ## HITS:1 COG:BS_ylbM KEGG:ns NR:ns ## COG: BS_ylbM COG1323 # Protein_GI_number: 16078570 # Func_class: R General function prediction only # Function: Predicted nucleotidyltransferase # Organism: Bacillus subtilis # 1 391 1 408 415 309 39.0 7e-84 MKACGIIVEYNPFHNGHRYHAQQARQQSGAEVVIAIMSGNFLQRGEPALLDKWARAEEAL QNGVDLVIELPTAWSVQSADYFAKGGIKLLQALQCESLCFGTDSTSAIDYAAFGQFVQEN QSLIDQTFHALTDKQLSYPQKMTAVFRQVYPESRFDFSSPNHILGMSYAKENATYPTPMT LYPIARKQAGFHDATISGKVASATAIRQSVFQQEITQVLPTVPSITAQHLQTQTMISWEN YWPFLKYKIVQSSLEELQAIYQMTEGLEYRLKDQIQAAGSFHELMERMKTKRYTWTRLQR LATYILLNMTKEEVETVWQNSYLHVLGFTPKGQAYLKETKAQIQLPVISKVSKENRAMLS LDIRANQLYQMGDSSLKEQNFGRFPLRFSPDT >gi|307679238|gb|GL457009.1| GENE 29 25784 - 26524 854 246 aa, chain - ## HITS:1 COG:L28696 KEGG:ns NR:ns ## COG: L28696 COG0500 # Protein_GI_number: 15672211 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Lactococcus lactis # 3 245 4 244 244 274 56.0 1e-73 MAYETFAFVYDEVMDESLYQKWLDFSNRHLPQGTQQILEMACGTGALAVDFAKSGYDVTA LDLSEEMLMIASERAFEEEVPVQFVQGNMLDLSEVGQYQAITCFSDSLCYMANRQEVQQV FDEVYQALEEEGTFIFDVHSTYKIDSVFPEYSYHYQTEEFAFLWDSYAGEKEHSIEHFLT FFVKEQETDEHFVRYDELHQERTYSLDNYLRMLESAGFMNVKVYADFTDEAPTETSERWF FVCQRD >gi|307679238|gb|GL457009.1| GENE 30 26526 - 26675 145 49 aa, chain - ## HITS:1 COG:lin1521 KEGG:ns NR:ns ## COG: lin1521 COG0799 # Protein_GI_number: 16800589 # Func_class: S Function unknown # Function: Uncharacterized homolog of plant Iojap protein # Organism: Listeria innocua # 1 46 69 114 118 71 67.0 4e-13 MEGKEGGKWILIDLGDVIVHVFQSSERAFYNLEKLWSDAPMVDLSAWVD >gi|307679238|gb|GL457009.1| GENE 31 26911 - 27501 1011 196 aa, chain - ## HITS:1 COG:SPy0309 KEGG:ns NR:ns ## COG: SPy0309 COG1713 # Protein_GI_number: 15674476 # Func_class: H Coenzyme transport and metabolism # Function: Predicted HD superfamily hydrolase involved in NAD metabolism # Organism: Streptococcus pyogenes M1 GAS # 6 191 5 190 197 178 48.0 4e-45 MSWITNYDAAQRELLMQKVQMQMSERRFRHVLGVEETAVALAAKYGADEAKASIAALTHD YAKERPNDEFELIIRRDGFDLTLLNYGNEIWHGLVGADIVQRELAIDDEEILQAIRVHTT GAAKMSLLDKIIYVADYIEPGRDFPGVKEAREIALVDLDAAVAYETKHTLLHLIEQEHKI YPKTLETYNQWVVNQK >gi|307679238|gb|GL457009.1| GENE 32 27479 - 28138 584 219 aa, chain - ## HITS:1 COG:SP1747 KEGG:ns NR:ns ## COG: SP1747 COG1057 # Protein_GI_number: 15901579 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid mononucleotide adenylyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 17 211 15 209 209 246 62.0 2e-65 MGEKRQARQGADVLLQEEPLRFQTRKQVGLLGGNFNPVHLAHLVMADQVQNQLGLDKVYL MPTYLPPHVDEKKTISSEHRLAMLELAVADNPCLDIEPIELIRKGKSYTYDTMKALKEAN PDTDYYFIIGGDMVEYLPKWHRIDDLLHLVQFVGIRRPNYPTESTYPIIWVDVPQMAISS TLIRQKVKSGCSTRYLLPENVINYIQEKGLYQDELDNKL >gi|307679238|gb|GL457009.1| GENE 33 28156 - 28467 286 103 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15901580|ref|NP_346184.1| hypothetical protein SP_1748 [Streptococcus pneumoniae TIGR4] # 1 103 1 103 103 114 58 8e-25 MKLRGKQKRYLRSQAHHLQPIFQVGKGGLNDAMITQIDEALEKRELIKITLLQNTDEVAE EVAEELTAAIHCDVVQIIGRVLVLFKPSSKEKYQKISAAVKEI >gi|307679238|gb|GL457009.1| GENE 34 28491 - 29600 1432 369 aa, chain - ## HITS:1 COG:SPy0306 KEGG:ns NR:ns ## COG: SPy0306 COG1161 # Protein_GI_number: 15674473 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pyogenes M1 GAS # 3 369 2 372 372 518 66.0 1e-147 MTEAIHCIGCGAIIQTENPHELGYTPKTAFEKGMETGEVYCQRCFRLRHYNDIQDVQLTD DDFLRLLNGLGTEDALIVNVVDIFDFNGSLIPGLHRFIGDNPVLLVGNKVDILPKSLKKT KMVQWMRERAHEAGLRPVDVLLTSGKKPQEMQELLDTIEKYREGRDVYVVGVTNVGKSTL INQIIQQTVGVQDVITTSQFPGTTLDKIEIPLDDGHFLIDTPGIIHRHQMAHYLGKKDLK IIAPQKEIKPKVYQLNAEQTLFLGGLARFDYVQGAKSSFIAYVSNDLNLHRTKTATADAF YEKHVGGLLQPPRADEVAEFPELVRFEFSVKEKTDIVFAGLGWITVTEPGVVAGWAPKGV DVLRRKALI >gi|307679238|gb|GL457009.1| GENE 35 29597 - 30124 650 175 aa, chain - ## HITS:1 COG:SPy0305 KEGG:ns NR:ns ## COG: SPy0305 COG2179 # Protein_GI_number: 15674472 # Func_class: R General function prediction only # Function: Predicted hydrolase of the HAD superfamily # Organism: Streptococcus pyogenes M1 GAS # 5 174 25 194 194 189 52.0 2e-48 MFSKYKPTWMIDAIYKITPAQLKKLGIKAVLTDLDNTLIAWNNPDGTEELKTWLLEMKNA GITVLVVSNNKDSRIKRVVEKFDLDYVARALKPTARGFKLAEKKLGLKPSEMLMVGDQIM TDIRGANAAGIRNVLVQPIVDTDGWNTRINRFFERKIMKYLSKKHPEMTWRGGLE >gi|307679238|gb|GL457009.1| GENE 36 30334 - 31122 974 262 aa, chain - ## HITS:1 COG:SPy1743 KEGG:ns NR:ns ## COG: SPy1743 COG0825 # Protein_GI_number: 15675592 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase alpha subunit # Organism: Streptococcus pyogenes M1 GAS # 13 262 11 256 256 324 70.0 8e-89 MEKKTANDVVTLARDQDRLTTLEYIEAIFEDFLEFHGDRYFADDLAVVGGVATLQGKPVT VIGIQKGRNLPENIERNFGSPNPEGYRKALRLMKQAEKFNRPVITFVNTAGAYCGIGAEE RGEGEAIAQNLLEMSDLKVPIISVIIGEGGSGGALALAVADEVWMLEHTIYAVLSPEGFA SILWKDGSRAKEAAELMKITATELKELAIVDKVIPEVMNGQPLEQAKINRMLQKAFISKL TELAKLDTETLLEKRYQRFRKY >gi|307679238|gb|GL457009.1| GENE 37 31124 - 31990 728 288 aa, chain - ## HITS:1 COG:SP0426 KEGG:ns NR:ns ## COG: SP0426 COG0777 # Protein_GI_number: 15900345 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase beta subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 282 1 283 288 406 68.0 1e-113 MALFKKKNYIRINPNRADANDASKKPSVPDNMWAKCPSCKRTLYTKEMGAEKICPHCGYS FRIGAWERLAITVDEKSFHNWDSELVTKDPLNFPGYLEKIEKMQEKTGLDEAVLTGEATI EGQAVAIGIMDANFIMGSMGTIVGEKITRLFERATEKHLPVVIFTASGGARMQEGIFSLM QMAKISAALQRHNKAGLLYLTVLTDPTTGGVTASFAMDGDIILAEPQSLIGFAGRRVIEQ TIRQELPDDFQKAEFLLEHGFVDQIVPRNLLRQRLSDLLRLHSLEGWR >gi|307679238|gb|GL457009.1| GENE 38 32046 - 33416 1592 456 aa, chain - ## HITS:1 COG:SP0425 KEGG:ns NR:ns ## COG: SP0425 COG0439 # Protein_GI_number: 15900344 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxylase # Organism: Streptococcus pneumoniae TIGR4 # 1 451 1 452 455 659 73.0 0 MFSKVLIANRGEIAVRIIRACRELGIQTVAVYSEADQEALHTQLADEAICIGPAKATDSY LNVQAVLSAAIVTNAEAIHPGFGFLSENSQFASMCEECNITFIGPKAETIDAMGNKINAR QLMQKAKVPVIPGSDGVIDSVEEALTIAEEIGYPVMLKAAAGGGGKGIRKVLSKEELPKH FTSAQQEAKAAFGNDDMYLEKIIYPARHIEVQILGDQYGHVIHLGERDCSLQRNNQKVLE ESPSIAISEEKRQMLGETAVRAAQAVHYENAGTIEFLMDPAGDFYFMEMNTRIQVEHPVT EMVTGIDLVKAQLEIASGEPLGYTQEDVTMTGHAIECRINAENPAFNFAPSPGKIQNLLL PSGGMGLRVDSAMYSGYSIPPYYDSMIAKVIVHGENRFDALMKMQRALNEIVTEGIITNA EFQLDLITHDNVLTGDYDTSFLQETFLPNWEPESNH >gi|307679238|gb|GL457009.1| GENE 39 33424 - 33849 565 141 aa, chain - ## HITS:1 COG:CAC3571 KEGG:ns NR:ns ## COG: CAC3571 COG0764 # Protein_GI_number: 15896805 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases # Organism: Clostridium acetobutylicum # 1 140 1 140 141 168 60.0 2e-42 MKLTITEIQEILPHRYPFLLLDSVEEVIPGERVVAKKNVTVNEQVFQGHFPGNPVLPGVL IIESLAQAGAVALLSMPEFKGKTAYFGGLDKAKFRQKVTPGDTLILEVELLKVRASAGMG KGVAKVNGKKVAEAELTFMIG >gi|307679238|gb|GL457009.1| GENE 40 33853 - 34341 634 162 aa, chain - ## HITS:1 COG:SPy1747 KEGG:ns NR:ns ## COG: SPy1747 COG0511 # Protein_GI_number: 15675596 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxyl carrier protein # Organism: Streptococcus pyogenes M1 GAS # 1 158 1 165 166 109 44.0 3e-24 MQLEEVKALLTQFDQSTLTEFDLREGSFELYMNKNTVSGRSAVEPVAQPQEIPVAASGVS VPVETVSVVEETPTNTPTTNEKTEEITSPIVGIVYLQPAPDKENFVKVGDTVKTGDVVCI VEAMKLMNEITATVDGVITEILVNNEDVVEFGQPLFRVAKGE >gi|307679238|gb|GL457009.1| GENE 41 34343 - 35578 1630 411 aa, chain - ## HITS:1 COG:SP0422 KEGG:ns NR:ns ## COG: SP0422 COG0304 # Protein_GI_number: 15900341 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Streptococcus pneumoniae TIGR4 # 1 411 3 410 411 475 58.0 1e-134 MNRVVITGYGVTSPIGNEPETFLESLKTGKNGIGPISKFDVSETGVTLAAEVKDFPMEKY FVKKDGKRMDKFSLFGIYAALEAMAMSGLDTSQLDVDRFGVMVGSGIGGLETIQNQVIRM HDKGPERVAPLFIPMAIGNMVAGNIALRVGAKGICTSTVTACASATHSIGEAFRNIKHGY SDVIIAGGAEAPITEIGISGFASLTALTKATDPEKASIPFDKERSGFVMGEGAGVFILES LDHALERGATILGEVVGYGANCDAYHMTSPTPDGSGAAKAMVLAMEEAGISPEKIGYINA HGTSTQANDSAESKAIELALGDAAKTAYVSSTKSMTGHLLGAAGGIEGIATLNALQHQFI PPTINVENQDEAITVNVVLNESKEHKFDYALSNSLGFGGHNAVICLKRWED >gi|307679238|gb|GL457009.1| GENE 42 35597 - 36334 214 245 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 6 239 4 238 242 87 28 2e-16 MELTGKNVFITGSTRGIGKAVALAFAKEGANIVLNGRSEITPEQRQEIEAFGVKCIGLSG DISDFDAAGEMIQATVDQLGSIDILVNNAGITNDKLLLRMTKEDFNACLDINLVGTFNMT QQAVKRMMKQRSGRIINMASVSGLMGNVGQANYAASKAGVVGFTKSVAREVAPRGITCNA IAPGFIQTEMTDVLSEKVKTQMNAQIPLQTFGQVEDVAATAIFLAKSPYITGQVVNVDGG LVMHG >gi|307679238|gb|GL457009.1| GENE 43 36338 - 37267 1177 309 aa, chain - ## HITS:1 COG:SP0420 KEGG:ns NR:ns ## COG: SP0420 COG0331 # Protein_GI_number: 15900339 # Func_class: I Lipid transport and metabolism # Function: (acyl-carrier-protein) S-malonyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 2 303 3 304 306 345 61.0 5e-95 MKTAILFSGQGAQYQGMGEELYHQEAIVRETFDEASHILGYEMAELCFTENERLNETEYT QPAILTVSVAFYRLLQQKGLTPDVVAGLSLGEYSALVASGALRFSEAVALVQKRGQYMTE AAPQGTGKMVAVMNAEREVIEKACQEASAFGIVAPANYNTPQQIVIGGEVAAVDQAMTLL KEAGVKRMIPLNVSGPFHTALLQPASKKLAQDLAKLNFQTMQIPVISNTTAEIMPQEAIQ ALLEKQVMSAVRFEDSIETMKAMNVGTMIEVGPGKTLTGFVKKIDKTIEMHRVEDVATLT ETLTALTGR >gi|307679238|gb|GL457009.1| GENE 44 37300 - 38256 1094 318 aa, chain - ## HITS:1 COG:SP0419 KEGG:ns NR:ns ## COG: SP0419 COG2070 # Protein_GI_number: 15900338 # Func_class: R General function prediction only # Function: Dioxygenases related to 2-nitropropane dioxygenase # Organism: Streptococcus pneumoniae TIGR4 # 1 317 1 317 324 394 68.0 1e-109 MNQQLCELLGINYPIFQGGMAWVADASLASAVSNAGGLGIIAGGNAPKEVVKKEIKKVKE LTEQPFGVNIMLLSPFADEIVDLVCEEQVPVVTTGAGNPAKYMARFKEHNIKVIPVVPSV ALAKRMEKIGADAVIFEGMEAGGHIGKLTTMSGLPQIVDAVSIPVIAAGGIGDGRGMAAA FMLGAEAVQLGTRFLIAKECNVHPDYKQKVLKARDLDAVITCQHFGHPVRTLKNKLTAQY NQLEKQELQKEVPDLEMFEKIGQGALRKAVVDGDMDYGSVMAGQIAGLIKKEETAQEIID SLMSECKAIVHKMNQRWG >gi|307679238|gb|GL457009.1| GENE 45 38393 - 38620 497 75 aa, chain - ## HITS:1 COG:no KEGG:EF2884 NR:ns ## KEGG: EF2884 # Name: acpP # Def: acyl carrier protein # Organism: E.faecalis # Pathway: not_defined # 1 75 1 75 75 83 100.0 3e-15 MVFEKIQAIIVEELGKDAEEVQLTTNIQEELDADSLDLFQIINEIEDEFDVKIETEDGIQ TVQDLVTYVEKQQAN >gi|307679238|gb|GL457009.1| GENE 46 38673 - 39638 1023 321 aa, chain - ## HITS:1 COG:SP0417 KEGG:ns NR:ns ## COG: SP0417 COG0332 # Protein_GI_number: 15900336 # Func_class: I Lipid transport and metabolism # Function: 3-oxoacyl-[acyl-carrier-protein] synthase III # Organism: Streptococcus pneumoniae TIGR4 # 4 321 3 324 324 367 57.0 1e-101 MKNYARISCTSRYVPENCVTNHQLSEMMDTSDEWIHSRTGISERRIVTQENTSDLCHQVA KQLLEKSGKQASEIDFILVATVTPDFNMPSVACQVQGVIGATEAFAFDISAACSGFVYAL SMAEKLVLSGRYQTGLVIGGETFSKMLDWTDRSTAVLFGDGAAGVLIEAAETPHFLNEKL QADGQRWAALTSGYTINESPFYQGHEQASKTLQMEGRSIFDFAIKDVSQNILSLVTDETV DYLLLHQANVRIIDKIARKTKISREKFLTNMDKYGNTSAASIPILLDEAVENGTLILGSQ QRVVLTGFGGGLTWGSLLLTL >gi|307679238|gb|GL457009.1| GENE 47 39654 - 40094 583 146 aa, chain - ## HITS:1 COG:CAC3579 KEGG:ns NR:ns ## COG: CAC3579 COG1846 # Protein_GI_number: 15896813 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Clostridium acetobutylicum # 1 144 1 144 154 156 59.0 1e-38 MEPNLETVNDYLVSVFNDILTIEESELKKSQFNDLSITEMHTIEAIGMYKKKTSSEVAKE LSITVGTLTVAINNLVKKGYVERLRSEDDRRVVKLGLTKKGKLLFRVHQHFHREMVKNIL KGMEQEEEQALLRALKNLHDFLQEYK >gi|307679238|gb|GL457009.1| GENE 48 40484 - 40714 302 76 aa, chain - ## HITS:1 COG:no KEGG:EF2888 NR:ns ## KEGG: EF2888 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 76 1 76 76 121 100.0 8e-27 MKHSQLVAIIKRLEAMIEAADNEVQVRRFEREGVEKCIVSFDKSTETFELTESDTHQSYQ FDNIDIVAMEIYDLIQ >gi|307679238|gb|GL457009.1| GENE 49 40815 - 41705 1235 296 aa, chain - ## HITS:1 COG:L81616 KEGG:ns NR:ns ## COG: L81616 COG2084 # Protein_GI_number: 15674197 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases # Organism: Lactococcus lactis # 1 292 1 292 293 370 63.0 1e-102 MSKIGFIGTGVMGKSIIRNMMKNNLSVNVYNRTKSKTDDLVAEGAVWYDTPKAIAEASDI IFTMVGFPSDVEGVYFNETGIFQADLTGKIVVDLTTSTPTLAEKIAKKAAEVGAHALDAP VSGGDLGAKNGTLTIMVGGDQESYDTVLPIFKTFGKTFMLHGSAGKGQHTKMANQLMIAG TMTGLTEMLVYANTTGLTLEKVLETVGGGSAANWSLSNYGPRILKEDYTPGFFVKHFIKD LKIALDEAKKLDLPLPATQKATELYESLADKGFENDGTQALIKLWWTDGKQPTNKN >gi|307679238|gb|GL457009.1| GENE 50 41778 - 43001 1381 407 aa, chain - ## HITS:1 COG:L190226 KEGG:ns NR:ns ## COG: L190226 COG0438 # Protein_GI_number: 15674120 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Lactococcus lactis # 1 386 1 386 446 432 56.0 1e-121 MKIGFFTDTYFPQVSGVATSIKTLKDELEKHGHEVYIFTTTDPNATDFEEDVIRMPSVPF VSFKDRRVVVRGMWYAYLIAKELELDLIHTHTEFGAGILGKMVGKKMKIPVIHTYHTMYE DYLHYIAKGKVVRPSHVKFFSRVFTNHTTGVVCPSERVIEKLRDYGVTAPMRIIPTGIEI DKFLRPDITEEMIAGMRQQLGIEEQQIMLLSLSRISYEKNIQAIIQGLPQVIEKLPQTRL VIVGNGPYLEDLKELAEELEVSEYVQFTGEVPNEEVAIYYKAADYFVSASTSETQGLTYT EAMAAGVQCIAEGNAYLNNLFDHESLGKTFKTDSDFAPTLIDYIQANIKMDQTILDEKLF EISSTNFGNKMIEFYQDTLIYFDQLQMEKENADSIKKIKVKFTSLRK >gi|307679238|gb|GL457009.1| GENE 51 43048 - 44043 1164 331 aa, chain - ## HITS:1 COG:L189090 KEGG:ns NR:ns ## COG: L189090 COG0438 # Protein_GI_number: 15674119 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Lactococcus lactis # 1 330 4 330 332 368 55.0 1e-102 MLYFEGEKILAKSGIGRALDHQKRALSEVGIEYTLDADCSDYDILHINTYGVNSHRMVRK ARKLGKKVIYHAHSTEEDFRNSFIGSNQLAPLVKKYLISLYSKADHLITPTPYSKTLLEG YGIKVPISAISNGIDLSRFYPSEEKEQKFREYFKIDEEKKVIICVGLFFERKGITDFIEV ARQLPEYQFIWFGDTPMYSIPKNIRQLVKEDHPENVIFPGYIKGDVIEGAYAAANLFFFP SREETEGIVVLEALASQQQVLVRDIPVYQGWLVANENCYMGHSIEEFKKYIEGLLEGKIP STREAGYQVAEQRSIKQIGYELKEVYETVLS Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:24:28 2011 Seq name: gi|307679237|gb|GL457010.1| Enterococcus faecalis TX2141 genomic scaffold Scfld52, whole genome shotgun sequence Length of sequence - 550 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - SSU_RRNA 64 - 550 100.0 # AY692453 [D:1..1570] # 16S ribosomal RNA # Enterococcus faecalis # Bacteria; Firmicutes; Lactobacillales; Enterococcaceae; Enterococcus. Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:25:37 2011 Seq name: gi|307679236|gb|GL457011.1| Enterococcus faecalis TX2141 genomic scaffold Scfld56, whole genome shotgun sequence Length of sequence - 239975 bp Number of predicted genes - 238, with homology - 223 Number of transcription units - 112, operones - 60 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 39 - 773 842 ## COG0778 Nitroreductase - Term 790 - 841 12.2 2 1 Op 2 . - CDS 857 - 1315 707 ## COG1854 LuxS protein involved in autoinducer AI2 synthesis - Prom 1401 - 1460 10.2 + Prom 1282 - 1341 9.0 3 2 Op 1 3/0.056 + CDS 1522 - 2589 1253 ## COG0136 Aspartate-semialdehyde dehydrogenase 4 2 Op 2 9/0.000 + CDS 2623 - 3495 923 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase 5 2 Op 3 . + CDS 3526 - 5214 1925 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily + Term 5230 - 5280 13.0 + Prom 5253 - 5312 5.3 6 3 Op 1 2/0.111 + CDS 5339 - 6721 1281 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases 7 3 Op 2 1/0.333 + CDS 6756 - 7391 887 ## COG4470 Uncharacterized protein conserved in bacteria 8 3 Op 3 3/0.056 + CDS 7397 - 8167 1073 ## COG0647 Predicted sugar phosphatases of the HAD superfamily 9 3 Op 4 . + CDS 8170 - 8808 501 ## COG4478 Predicted membrane protein + Term 8810 - 8863 9.6 + Prom 8835 - 8894 6.3 10 4 Op 1 . + CDS 8935 - 9504 711 ## EF1190 hypothetical protein 11 4 Op 2 . + CDS 9497 - 10357 1092 ## COG1307 Uncharacterized protein conserved in bacteria + Term 10358 - 10420 19.0 + Prom 10360 - 10419 6.0 12 5 Tu 1 . + CDS 10511 - 11176 937 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) + Term 11182 - 11248 15.9 + Prom 11191 - 11250 7.2 13 6 Op 1 8/0.000 + CDS 11350 - 12054 1092 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 14 6 Op 2 4/0.056 + CDS 12061 - 13890 1897 ## COG5002 Signal transduction histidine kinase 15 6 Op 3 . + CDS 13890 - 15197 1172 ## COG4863 Uncharacterized protein conserved in bacteria 16 6 Op 4 . + CDS 15197 - 16051 757 ## EF1196 hypothetical protein 17 6 Op 5 . + CDS 16108 - 16914 934 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I + Term 16938 - 16993 12.2 + Prom 17041 - 17100 6.6 18 7 Op 1 7/0.000 + CDS 17125 - 18039 857 ## COG0701 Predicted permeases 19 7 Op 2 . + CDS 18058 - 18924 902 ## COG3689 Predicted membrane protein + Term 18931 - 18977 11.1 - Term 18919 - 18965 11.1 20 8 Op 1 12/0.000 - CDS 18977 - 19468 548 ## COG3610 Uncharacterized conserved protein 21 8 Op 2 . - CDS 19483 - 20235 704 ## COG2966 Uncharacterized conserved protein + Prom 20468 - 20527 11.1 22 9 Op 1 6/0.000 + CDS 20671 - 20940 508 ## COG4472 Uncharacterized protein conserved in bacteria 23 9 Op 2 7/0.000 + CDS 20946 - 21359 440 ## COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) 24 9 Op 3 . + CDS 21397 - 21702 534 ## COG3906 Uncharacterized protein conserved in bacteria + Term 21716 - 21761 8.0 - Term 21972 - 22011 7.5 25 10 Tu 1 . - CDS 22041 - 22103 246 ## - Prom 22127 - 22186 9.1 + Prom 21913 - 21972 9.7 26 11 Tu 1 . + CDS 22203 - 23051 1026 ## MPTP_1291 Cro/CI family transcriptional regulator + Term 23078 - 23122 6.3 - Term 23065 - 23110 6.5 27 12 Op 1 3/0.056 - CDS 23123 - 24292 1488 ## COG0281 Malic enzyme 28 12 Op 2 . - CDS 24324 - 25649 1485 ## COG3493 Na+/citrate symporter - Prom 25680 - 25739 6.7 + Prom 25717 - 25776 8.8 29 13 Op 1 9/0.000 + CDS 25797 - 27347 1719 ## COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism 30 13 Op 2 . + CDS 27328 - 28020 472 ## PROTEIN SUPPORTED gi|149011191|ref|ZP_01832496.1| 30S ribosomal protein S9 + Term 28081 - 28140 8.4 + Prom 28022 - 28081 8.3 31 14 Tu 1 . + CDS 28206 - 29549 1952 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases + Term 29557 - 29615 17.6 - Term 29550 - 29598 7.2 32 15 Tu 1 . - CDS 29602 - 30513 1071 ## COG1316 Transcriptional regulator - Prom 30581 - 30640 6.4 33 16 Tu 1 . - CDS 30715 - 30834 59 ## - Prom 30913 - 30972 5.5 + Prom 30697 - 30756 7.7 34 17 Op 1 3/0.056 + CDS 30791 - 32443 2043 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] 35 17 Op 2 . + CDS 32455 - 33159 843 ## COG3527 Alpha-acetolactate decarboxylase + Term 33186 - 33236 16.1 + Prom 33234 - 33293 11.9 36 18 Op 1 . + CDS 33317 - 34399 875 ## EF1215 hypothetical protein 37 18 Op 2 . + CDS 34417 - 34479 92 ## - Term 34453 - 34502 2.3 38 19 Tu 1 . - CDS 34513 - 35232 785 ## EF1216 hypothetical protein - Prom 35257 - 35316 13.5 + Prom 35375 - 35434 4.9 39 20 Tu 1 . + CDS 35481 - 35885 498 ## EF1217 putative lipoprotein + Term 35906 - 35952 3.2 + Prom 35887 - 35946 7.5 40 21 Op 1 36/0.000 + CDS 36093 - 36929 1020 ## COG1176 ABC-type spermidine/putrescine transport system, permease component I 41 21 Op 2 8/0.000 + CDS 36922 - 37701 824 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 42 21 Op 3 13/0.000 + CDS 37740 - 38780 1219 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components 43 21 Op 4 . + CDS 38807 - 39871 1403 ## COG0687 Spermidine/putrescine-binding periplasmic protein 44 21 Op 5 . + CDS 39892 - 41631 1744 ## COG1001 Adenine deaminase 45 21 Op 6 . + CDS 41615 - 42943 1256 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases + Term 43020 - 43061 4.0 + Prom 43040 - 43099 9.2 46 22 Tu 1 . + CDS 43149 - 44018 896 ## EF1224 Cro/CI family transcriptional regulator + Term 44095 - 44135 5.1 + Prom 44128 - 44187 10.6 47 23 Op 1 2/0.111 + CDS 44238 - 45173 948 ## COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis 48 23 Op 2 1/0.333 + CDS 45200 - 45808 766 ## COG0431 Predicted flavoprotein 49 23 Op 3 . + CDS 45827 - 47083 1404 ## COG0431 Predicted flavoprotein + Term 47323 - 47358 5.2 + Prom 47310 - 47369 7.0 50 24 Op 1 . + CDS 47495 - 48985 691 ## EF1228 hypothetical protein 51 24 Op 2 . + CDS 48927 - 49610 458 ## EF1229 hypothetical protein 52 24 Op 3 . + CDS 49631 - 49726 191 ## + Term 49742 - 49791 14.2 + Prom 49737 - 49796 6.4 53 25 Tu 1 . + CDS 49934 - 50758 1022 ## COG1408 Predicted phosphohydrolases + Term 50762 - 50794 3.2 + Prom 50954 - 51013 9.9 54 26 Op 1 7/0.000 + CDS 51050 - 51961 945 ## COG4209 ABC-type polysaccharide transport system, permease component 55 26 Op 2 14/0.000 + CDS 51976 - 52857 731 ## COG0395 ABC-type sugar transport system, permease component 56 26 Op 3 . + CDS 52875 - 54473 2072 ## COG1653 ABC-type sugar transport system, periplasmic component 57 26 Op 4 . + CDS 54530 - 55123 338 ## EF1235 hypothetical protein 58 26 Op 5 . + CDS 55116 - 56033 719 ## COG3458 Acetyl esterase (deacetylase) 59 26 Op 6 . + CDS 56014 - 56778 652 ## COG3568 Metal-dependent hydrolase 60 26 Op 7 1/0.333 + CDS 56783 - 58933 2541 ## COG1472 Beta-glucosidase-related glycosidases 61 26 Op 8 2/0.111 + CDS 58951 - 62226 2948 ## COG3459 Cellobiose phosphorylase 62 26 Op 9 . + CDS 62242 - 63207 981 ## COG1609 Transcriptional regulators + Term 63218 - 63265 8.4 - Term 62984 - 63018 -0.8 63 27 Tu 1 . - CDS 63240 - 63770 601 ## EF1241 hypothetical protein - Prom 63865 - 63924 7.4 - Term 63923 - 63972 1.4 64 28 Tu 1 . - CDS 64041 - 64754 913 ## COG2188 Transcriptional regulators - Prom 64780 - 64839 9.9 + Prom 64847 - 64906 7.1 65 29 Op 1 1/0.333 + CDS 64997 - 66430 1740 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 66 29 Op 2 . + CDS 66455 - 67504 1252 ## COG0673 Predicted dehydrogenases and related proteins + Term 67523 - 67582 19.6 + Prom 67735 - 67794 7.0 67 30 Tu 1 . + CDS 67978 - 68436 509 ## COG2707 Predicted membrane protein + Term 68441 - 68482 8.2 - Term 68428 - 68470 9.2 68 31 Op 1 . - CDS 68475 - 68816 409 ## EF1247 hypothetical protein - Term 68836 - 68879 1.4 69 31 Op 2 . - CDS 68890 - 69153 423 ## EF1248 hypothetical protein - Prom 69203 - 69262 3.0 - Term 69250 - 69290 1.1 70 32 Tu 1 . - CDS 69309 - 71021 1806 ## COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP - Prom 71050 - 71109 8.0 + Prom 71142 - 71201 5.3 71 33 Op 1 . + CDS 71241 - 71900 704 ## EF1250 hypothetical protein 72 33 Op 2 . + CDS 71964 - 72071 177 ## + Term 72100 - 72135 2.7 + Prom 72661 - 72720 3.1 73 34 Op 1 9/0.000 + CDS 72761 - 73750 1202 ## COG2984 ABC-type uncharacterized transport system, periplasmic component 74 34 Op 2 13/0.000 + CDS 73775 - 74662 1117 ## COG4120 ABC-type uncharacterized transport system, permease component 75 34 Op 3 . + CDS 74659 - 75426 209 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 + Term 75432 - 75464 2.5 - Term 75420 - 75452 2.5 76 35 Op 1 12/0.000 - CDS 75458 - 75919 439 ## COG3610 Uncharacterized conserved protein 77 35 Op 2 . - CDS 75931 - 76707 619 ## COG2966 Uncharacterized conserved protein + Prom 76710 - 76769 11.1 78 36 Tu 1 . + CDS 76939 - 77145 193 ## EF1258 hypothetical protein - Term 77105 - 77155 6.2 79 37 Tu 1 . - CDS 77163 - 77942 1012 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 78099 - 78158 7.1 + Prom 78061 - 78120 6.1 80 38 Op 1 40/0.000 + CDS 78157 - 78876 881 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 81 38 Op 2 . + CDS 78876 - 80345 1617 ## COG0642 Signal transduction histidine kinase + Term 80347 - 80394 6.9 - Term 80339 - 80377 2.2 82 39 Op 1 . - CDS 80383 - 80934 582 ## EF1262 hypothetical protein 83 39 Op 2 . - CDS 80949 - 81650 446 ## EF1263 hypothetical protein - Prom 81682 - 81741 5.4 - Term 81703 - 81750 10.7 84 40 Tu 1 . - CDS 81756 - 83864 1989 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily - Prom 83933 - 83992 7.2 + Prom 83897 - 83956 6.7 85 41 Tu 1 . + CDS 84122 - 85294 329 ## PROTEIN SUPPORTED gi|223476703|ref|YP_002580685.1| ribosomal protein L11 methyltransferase, putative + Term 85305 - 85365 19.1 - Term 85301 - 85342 5.1 86 42 Tu 1 . - CDS 85361 - 86278 1011 ## COG1039 Ribonuclease HIII - Prom 86474 - 86533 3.5 87 43 Tu 1 . + CDS 86503 - 88917 2107 ## COG0474 Cation transport ATPase + Term 88918 - 88975 17.0 + Prom 88920 - 88979 9.2 88 44 Tu 1 . + CDS 89059 - 90945 1670 ## COG4932 Predicted outer membrane protein + Term 90981 - 91013 -0.2 + Prom 90986 - 91045 4.8 89 45 Op 1 32/0.000 + CDS 91151 - 91624 627 ## COG0779 Uncharacterized protein conserved in bacteria + Prom 91639 - 91698 2.3 90 45 Op 2 22/0.000 + CDS 91768 - 92967 787 ## PROTEIN SUPPORTED gi|17988250|ref|NP_540884.1| transcription elongation factor NusA 91 45 Op 3 8/0.000 + CDS 92988 - 93287 525 ## COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination 92 45 Op 4 10/0.000 + CDS 93277 - 93582 495 ## PROTEIN SUPPORTED gi|29375842|ref|NP_814996.1| ribosomal protein L7A family protein 93 45 Op 5 32/0.000 + CDS 93595 - 95991 3024 ## COG0532 Translation initiation factor 2 (IF-2; GTPase) 94 45 Op 6 . + CDS 96016 - 96366 635 ## COG0858 Ribosome-binding factor A + Term 96368 - 96427 15.0 95 46 Tu 1 . + CDS 96449 - 96679 73 ## gi|315153236|gb|EFT97252.1| hypothetical protein HMPREF9502_01271 + Term 96700 - 96748 13.0 96 47 Op 1 . - CDS 96739 - 97212 523 ## EF1276 hypothetical protein 97 47 Op 2 . - CDS 97259 - 97741 556 ## COG1396 Predicted transcriptional regulators - Prom 97985 - 98044 10.3 + Prom 97722 - 97781 6.5 98 48 Op 1 . + CDS 97959 - 98093 200 ## 99 48 Op 2 . + CDS 98124 - 98894 714 ## EF1279 DNA replication protein, putative 100 48 Op 3 . + CDS 98913 - 99755 843 ## COG1484 DNA replication protein 101 48 Op 4 . + CDS 99758 - 99850 210 ## 102 48 Op 5 . + CDS 99843 - 100214 358 ## EF1282 hypothetical protein 103 48 Op 6 . + CDS 100234 - 100641 568 ## EF1283 RinA family transcriptional regulator + Prom 100662 - 100721 4.2 104 49 Op 1 . + CDS 100887 - 101279 449 ## EF1284 structural protein, putative 105 49 Op 2 . + CDS 101292 - 101561 557 ## EF1285 major tail protein + Prom 101689 - 101748 3.1 106 50 Tu 1 . + CDS 101837 - 102196 489 ## EF1286 hypothetical protein + Term 102204 - 102244 7.5 107 51 Op 1 . + CDS 102289 - 102570 285 ## EF1287 hypothetical protein 108 51 Op 2 . + CDS 102571 - 105504 3630 ## COG5412 Phage-related protein 109 51 Op 3 . + CDS 105506 - 106432 1170 ## EF1289 tail protein, putative 110 51 Op 4 . + CDS 106445 - 107902 1205 ## EF1290 structural protein, putative 111 51 Op 5 . + CDS 107935 - 109704 1667 ## EF1291 hypothetical protein 112 51 Op 6 . + CDS 109728 - 110123 489 ## COG4824 Phage-related holin (Lysis protein) + Term 110208 - 110258 6.5 + Prom 110181 - 110240 3.2 113 52 Tu 1 . + CDS 110269 - 111366 1213 ## COG5263 FOG: Glucan-binding domain (YG repeat) + Term 111372 - 111418 11.1 + Prom 111431 - 111490 4.9 114 53 Op 1 12/0.000 + CDS 111520 - 112440 977 ## COG0130 Pseudouridine synthase 115 53 Op 2 . + CDS 112466 - 113416 608 ## PROTEIN SUPPORTED gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 116 53 Op 3 . + CDS 113416 - 114012 522 ## COG3153 Predicted acetyltransferase + Term 114023 - 114075 11.8 + Prom 114065 - 114124 5.8 117 54 Op 1 3/0.056 + CDS 114162 - 114485 348 ## COG1695 Predicted transcriptional regulators 118 54 Op 2 . + CDS 114489 - 114830 470 ## COG4817 Uncharacterized protein conserved in bacteria 119 54 Op 3 . + CDS 114856 - 115116 340 ## EF1299 hypothetical protein 120 54 Op 4 . + CDS 115070 - 115165 59 ## + Term 115173 - 115207 -0.8 + Prom 115190 - 115249 8.0 121 55 Op 1 2/0.111 + CDS 115275 - 116450 997 ## COG0772 Bacterial cell division membrane protein 122 55 Op 2 . + CDS 116416 - 117564 871 ## COG0772 Bacterial cell division membrane protein + Term 117574 - 117638 11.8 - Term 117562 - 117625 13.3 123 56 Op 1 . - CDS 117626 - 118513 805 ## COG0583 Transcriptional regulator 124 56 Op 2 . - CDS 118537 - 118809 186 ## EF1303 LysR family transcriptional regulator 125 56 Op 3 . - CDS 118734 - 119411 648 ## COG0583 Transcriptional regulator - Prom 119436 - 119495 6.3 + Prom 119786 - 119845 2.8 126 57 Op 1 . + CDS 119890 - 119979 97 ## 127 57 Op 2 . + CDS 119948 - 122608 2606 ## COG0474 Cation transport ATPase + Term 122661 - 122704 3.3 + Prom 122702 - 122761 5.3 128 58 Op 1 5/0.000 + CDS 122816 - 124000 1160 ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases + Term 124014 - 124057 6.1 + Prom 124117 - 124176 7.8 129 58 Op 2 21/0.000 + CDS 124226 - 125269 1156 ## COG1420 Transcriptional regulator of heat shock gene 130 58 Op 3 29/0.000 + CDS 125324 - 125863 886 ## COG0576 Molecular chaperone GrpE (heat shock protein) 131 58 Op 4 . + CDS 125923 - 127752 2631 ## COG0443 Molecular chaperone + Term 127772 - 127823 7.4 + Prom 127788 - 127847 2.5 132 59 Op 1 . + CDS 127867 - 127989 129 ## EF1309 hypothetical protein 133 59 Op 2 . + CDS 128044 - 129213 1607 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain + Term 129330 - 129382 14.2 + Prom 129358 - 129417 12.3 134 60 Op 1 . + CDS 129452 - 130186 808 ## COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases + Prom 130196 - 130255 5.6 135 60 Op 2 6/0.000 + CDS 130284 - 132476 195 ## PROTEIN SUPPORTED gi|229231694|ref|ZP_04356122.1| SSU ribosomal protein S1P 136 60 Op 3 . + CDS 132479 - 132964 306 ## COG3091 Uncharacterized protein conserved in bacteria + Term 132970 - 133012 9.6 + TRNA 133033 - 133119 56.4 # Leu GAG 0 0 137 61 Tu 1 . + CDS 133363 - 134580 1164 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase + Term 134583 - 134640 17.0 - Term 134571 - 134628 19.5 138 62 Tu 1 . - CDS 134646 - 134822 322 ## EF1315 hypothetical protein - Prom 135014 - 135073 4.6 + Prom 134832 - 134891 6.5 139 63 Op 1 . + CDS 135000 - 135827 994 ## EF1316 Cro/CI family transcriptional regulator + Prom 135842 - 135901 3.1 140 63 Op 2 . + CDS 135928 - 137076 1479 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase + Term 137084 - 137131 12.3 - Term 137078 - 137113 5.0 141 64 Op 1 . - CDS 137120 - 137506 576 ## EF1318 hypothetical protein 142 64 Op 2 . - CDS 137520 - 138179 739 ## EF1319 hypothetical protein - Prom 138232 - 138291 6.0 + Prom 138151 - 138210 5.7 143 65 Op 1 36/0.000 + CDS 138340 - 139041 344 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 144 65 Op 2 . + CDS 139051 - 141687 2277 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Prom 141790 - 141849 6.2 145 66 Op 1 . + CDS 141880 - 142404 627 ## EF1322 hypothetical protein 146 66 Op 2 . + CDS 142421 - 143890 2295 ## COG2268 Uncharacterized protein conserved in bacteria + Term 143905 - 143944 6.0 + Prom 143925 - 143984 4.1 147 67 Tu 1 . + CDS 144037 - 144270 384 ## EF1324 hypothetical protein + Term 144282 - 144338 7.1 + TRNA 144367 - 144447 72.8 # Tyr GTA 0 0 + TRNA 144457 - 144528 67.6 # Gln TTG 0 0 148 68 Tu 1 . + CDS 144683 - 144862 252 ## EF1325 hypothetical protein + Term 144876 - 144930 14.0 - Term 144866 - 144914 14.1 149 69 Tu 1 . - CDS 144918 - 145526 578 ## COG1309 Transcriptional regulator + Prom 145578 - 145637 8.3 150 70 Tu 1 . + CDS 145705 - 149952 3853 ## COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) + Term 149978 - 150027 6.1 + Prom 150071 - 150130 7.3 151 71 Tu 1 . + CDS 150158 - 150865 921 ## COG2188 Transcriptional regulators + Prom 150867 - 150926 3.5 152 72 Tu 1 . + CDS 150969 - 151037 163 ## + Term 151236 - 151275 3.2 + Prom 151290 - 151349 6.9 153 73 Op 1 . + CDS 151391 - 151456 168 ## + Term 151479 - 151512 4.0 154 73 Op 2 . + CDS 151525 - 151608 143 ## + Prom 151617 - 151676 2.5 155 74 Op 1 . + CDS 151764 - 152522 486 ## COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 156 74 Op 2 . + CDS 152486 - 153358 138 ## EF1330 hypothetical protein 157 74 Op 3 . + CDS 153381 - 154325 265 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 158 74 Op 4 . + CDS 154303 - 155061 335 ## EF1332 hypothetical protein 159 74 Op 5 . + CDS 155070 - 155717 208 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 160 74 Op 6 . + CDS 155689 - 155784 82 ## 161 75 Op 1 . - CDS 156512 - 157126 252 ## EF1335 sensor histidine kinase, putative 162 75 Op 2 . - CDS 157108 - 157821 247 ## EF1335 sensor histidine kinase, putative 163 75 Op 3 . - CDS 157821 - 158525 394 ## COG3279 Response regulator of the LytR/AlgR family - Prom 158551 - 158610 9.8 + Prom 158960 - 159019 5.8 164 76 Op 1 . + CDS 159100 - 159522 274 ## EF1337 hypothetical protein + Prom 159538 - 159597 6.3 165 76 Op 2 . + CDS 159701 - 160615 630 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 + Term 160621 - 160664 10.3 - Term 160609 - 160652 6.5 166 77 Op 1 . - CDS 160658 - 161119 634 ## EF1339 hypothetical protein - Prom 161145 - 161204 8.3 167 77 Op 2 . - CDS 161316 - 161816 594 ## EF1340 pheromone cAM373 precursor lipoprotein - Prom 161848 - 161907 9.8 + Prom 161713 - 161772 7.2 168 78 Tu 1 . + CDS 161815 - 161898 103 ## - Term 161871 - 161933 15.2 169 79 Tu 1 . - CDS 161935 - 164274 2643 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component + Prom 164194 - 164253 8.6 170 80 Tu 1 . + CDS 164420 - 164908 552 ## EF1342 MarR family transcriptional regulator + Term 164913 - 164951 5.4 - Term 164900 - 164939 8.1 171 81 Op 1 20/0.000 - CDS 164946 - 165809 756 ## COG3833 ABC-type maltose transport systems, permease component 172 81 Op 2 19/0.000 - CDS 165813 - 167156 1035 ## COG1175 ABC-type sugar transport systems, permease components - Prom 167181 - 167240 5.5 - Term 167184 - 167231 7.0 173 81 Op 3 . - CDS 167242 - 168492 1790 ## COG2182 Maltose-binding periplasmic proteins/domains - Prom 168637 - 168696 13.2 + Prom 168596 - 168655 6.8 174 82 Op 1 . + CDS 168677 - 168751 104 ## 175 82 Op 2 7/0.000 + CDS 168752 - 170518 1653 ## COG0366 Glycosidases 176 82 Op 3 7/0.000 + CDS 170546 - 172171 1573 ## COG0366 Glycosidases 177 82 Op 4 . + CDS 172173 - 173786 1557 ## COG0366 Glycosidases + Term 173804 - 173855 12.0 + Prom 173859 - 173918 10.2 178 83 Tu 1 . + CDS 173957 - 174538 685 ## COG3548 Predicted integral membrane protein 179 84 Tu 1 . + CDS 175014 - 177623 2844 ## COG0474 Cation transport ATPase + Prom 178073 - 178132 6.0 180 85 Op 1 28/0.000 + CDS 178222 - 179337 1689 ## COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit 181 85 Op 2 24/0.000 + CDS 179340 - 180317 1297 ## COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit 182 85 Op 3 30/0.000 + CDS 180460 - 182079 2108 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes 183 85 Op 4 . + CDS 182087 - 183493 788 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 + Term 183568 - 183624 17.0 - Term 183567 - 183600 2.3 184 86 Tu 1 . - CDS 183607 - 184593 933 ## COG4936 Predicted sensor domain - Prom 184762 - 184821 5.7 + Prom 184609 - 184668 8.1 185 87 Op 1 . + CDS 184754 - 185893 1432 ## COG0371 Glycerol dehydrogenase and related enzymes 186 87 Op 2 9/0.000 + CDS 185906 - 186304 552 ## COG3412 Uncharacterized protein conserved in bacteria 187 87 Op 3 10/0.000 + CDS 186305 - 187288 1369 ## COG2376 Dihydroxyacetone kinase 188 87 Op 4 . + CDS 187301 - 187903 889 ## COG2376 Dihydroxyacetone kinase + Term 187917 - 187966 9.1 + Prom 187943 - 188002 10.6 189 88 Tu 1 . + CDS 188042 - 188809 867 ## EF1362 hypothetical protein + Term 188813 - 188862 15.6 - Term 188800 - 188850 15.0 190 89 Tu 1 . - CDS 188882 - 190033 1353 ## COG3425 3-hydroxy-3-methylglutaryl CoA synthase - Prom 190115 - 190174 6.6 + Prom 190000 - 190059 6.8 191 90 Tu 1 . + CDS 190219 - 192630 2723 ## COG1257 Hydroxymethylglutaryl-CoA reductase + Term 192636 - 192678 10.1 - Term 192568 - 192604 1.1 192 91 Op 1 . - CDS 192650 - 193702 940 ## COG0628 Predicted permease 193 91 Op 2 . - CDS 193719 - 194924 996 ## COG1434 Uncharacterized conserved protein - Prom 194991 - 195050 8.3 - Term 195026 - 195057 2.1 194 92 Tu 1 . - CDS 195080 - 195280 337 ## COG1278 Cold shock proteins - Prom 195313 - 195372 5.1 - Term 195520 - 195564 9.1 195 93 Tu 1 . - CDS 195578 - 196699 1170 ## EF1368 hypothetical protein - Prom 196828 - 196887 6.9 196 94 Tu 1 . - CDS 196924 - 197691 283 ## gi|315145677|gb|EFT89693.1| hypothetical protein HMPREF9495_00636 - Prom 197723 - 197782 3.8 197 95 Op 1 . - CDS 197811 - 198122 250 ## gi|312900631|ref|ZP_07759928.1| hypothetical protein HMPREF9510_01429 198 95 Op 2 . - CDS 198123 - 198818 174 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 - Prom 198851 - 198910 15.9 + Prom 198810 - 198869 8.6 199 96 Tu 1 . + CDS 198944 - 199330 312 ## gi|312900633|ref|ZP_07759930.1| conserved domain protein + Term 199372 - 199424 17.6 - Term 199440 - 199489 -0.4 200 97 Tu 1 . - CDS 199491 - 199841 403 ## COG1396 Predicted transcriptional regulators - Prom 199866 - 199925 6.0 + Prom 199941 - 200000 4.0 201 98 Tu 1 . + CDS 200033 - 201466 1400 ## COG0477 Permeases of the major facilitator superfamily + Term 201474 - 201526 15.1 + Prom 201520 - 201579 4.0 202 99 Op 1 1/0.333 + CDS 201671 - 202345 792 ## COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold 203 99 Op 2 3/0.056 + CDS 202355 - 203674 1391 ## COG4109 Predicted transcriptional regulator containing CBS domains 204 99 Op 3 . + CDS 203688 - 204641 926 ## PROTEIN SUPPORTED gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B + Prom 204668 - 204727 7.6 205 100 Tu 1 . + CDS 204755 - 205093 435 ## COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism + Term 205116 - 205168 13.3 - Term 205104 - 205153 11.9 206 101 Tu 1 . - CDS 205154 - 205465 366 ## EF1375 hypothetical protein - Prom 205606 - 205665 8.0 + Prom 205487 - 205546 7.9 207 102 Op 1 . + CDS 205608 - 206789 804 ## COG4767 Glycopeptide antibiotics resistance protein 208 102 Op 2 . + CDS 206852 - 208201 1516 ## COG0513 Superfamily II DNA and RNA helicases + Term 208223 - 208271 13.4 + Prom 208528 - 208587 9.8 209 103 Op 1 . + CDS 208749 - 209429 463 ## EF1378 transcriptional regulator, putative + Term 209443 - 209481 -0.3 210 103 Op 2 . + CDS 209778 - 212420 3521 ## COG0013 Alanyl-tRNA synthetase + Term 212481 - 212528 9.4 + Prom 212478 - 212537 5.2 211 104 Op 1 9/0.000 + CDS 212623 - 213339 891 ## COG2384 Predicted SAM-dependent methyltransferase 212 104 Op 2 . + CDS 213323 - 214441 1399 ## COG0327 Uncharacterized conserved protein 213 104 Op 3 . + CDS 214471 - 215700 1862 ## COG2195 Di- and tripeptidases + Term 215711 - 215771 1.8 + Prom 215762 - 215821 6.3 214 105 Op 1 . + CDS 215846 - 216112 278 ## COG3326 Predicted membrane protein 215 105 Op 2 . + CDS 216132 - 217160 801 ## COG0392 Predicted integral membrane protein + Term 217165 - 217209 13.4 + Prom 217190 - 217249 10.1 216 106 Op 1 . + CDS 217301 - 217876 512 ## COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A 217 106 Op 2 . + CDS 217892 - 218716 680 ## COG2116 Formate/nitrite family of transporters 218 106 Op 3 . + CDS 218706 - 219287 520 ## EF1387 hypothetical protein 219 106 Op 4 . + CDS 219275 - 219598 532 ## EF1388 NAD-dependent formate dehydrogenase, gamma subunit, putative + Prom 219623 - 219682 4.3 220 107 Op 1 2/0.111 + CDS 219775 - 221073 1060 ## COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit 221 107 Op 2 . + CDS 221076 - 222587 1410 ## COG3383 Uncharacterized anaerobic dehydrogenase 222 107 Op 3 . + CDS 222602 - 223804 1433 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing 223 107 Op 4 5/0.000 + CDS 223823 - 225025 870 ## COG0303 Molybdopterin biosynthesis enzyme + Prom 225385 - 225444 4.5 224 107 Op 5 6/0.000 + CDS 225518 - 226000 410 ## COG0315 Molybdenum cofactor biosynthesis enzyme 225 107 Op 6 . + CDS 226006 - 226971 697 ## COG2896 Molybdenum cofactor biosynthesis enzyme 226 107 Op 7 . + CDS 226974 - 227408 333 ## COG2258 Uncharacterized protein conserved in bacteria 227 107 Op 8 3/0.056 + CDS 227401 - 227883 242 ## PROTEIN SUPPORTED gi|134277849|ref|ZP_01764564.1| ribosomal protein S16 228 107 Op 9 1/0.333 + CDS 227887 - 228858 1044 ## COG0303 Molybdopterin biosynthesis enzyme 229 107 Op 10 23/0.000 + CDS 228877 - 229677 897 ## COG0725 ABC-type molybdate transport system, periplasmic component 230 107 Op 11 6/0.000 + CDS 229686 - 230357 622 ## COG4149 ABC-type molybdate transport system, permease component 231 107 Op 12 . + CDS 230354 - 231358 848 ## COG1118 ABC-type sulfate/molybdate transport systems, ATPase component + Term 231426 - 231463 1.7 + Prom 231361 - 231420 6.1 232 108 Tu 1 . + CDS 231480 - 233582 2512 ## COG2217 Cation transport ATPase + Term 233596 - 233633 3.1 233 109 Tu 1 . - CDS 233703 - 233888 87 ## gi|229545914|ref|ZP_04434639.1| hypothetical protein HMPREF0349_1131 - Prom 233923 - 233982 3.6 + Prom 233760 - 233819 5.5 234 110 Op 1 . + CDS 233851 - 234294 569 ## EF1402 hypothetical protein 235 110 Op 2 3/0.056 + CDS 234314 - 234862 441 ## COG1286 Uncharacterized membrane protein, required for colicin V production 236 111 Op 1 3/0.056 + CDS 234973 - 237339 3020 ## COG1193 Mismatch repair ATPase (MutS family) + Prom 237346 - 237405 7.1 237 111 Op 2 4/0.056 + CDS 237437 - 237751 556 ## COG0526 Thiol-disulfide isomerase and thioredoxins + Term 237783 - 237835 10.3 + Prom 237830 - 237889 8.2 238 112 Tu 1 . + CDS 237916 - 239712 1771 ## COG0322 Nuclease subunit of the excinuclease complex + Term 239778 - 239813 1.1 Predicted protein(s) >gi|307679236|gb|GL457011.1| GENE 1 39 - 773 842 244 aa, chain - ## HITS:1 COG:lin0323 KEGG:ns NR:ns ## COG: lin0323 COG0778 # Protein_GI_number: 16799400 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Listeria innocua # 1 244 1 244 245 268 53.0 5e-72 MNQTIEQLLSHRSVRHFKKQALTDKQKQQLITAAQAGSSSNFLQAYTIIEIKDPELRREL GRLANCEDYVVNTGLFYVFVADLYRHATILSKEGQSLEPLKTPESLLVAAVDTTIAAQNM AIAAESMDLGICYIGGIRNDLDTVAKRLSLPELTVPLFGLTIGVPETLNGVKPRMPFENI LSENHYQSDKLTDMHTYDELLKDYYASRSSNAQTADWSQKSLSYFSYNRRPEVKTFLQKQ GFDI >gi|307679236|gb|GL457011.1| GENE 2 857 - 1315 707 152 aa, chain - ## HITS:1 COG:SP0340 KEGG:ns NR:ns ## COG: SP0340 COG1854 # Protein_GI_number: 15900270 # Func_class: T Signal transduction mechanisms # Function: LuxS protein involved in autoinducer AI2 synthesis # Organism: Streptococcus pneumoniae TIGR4 # 4 150 7 157 160 177 55.0 4e-45 MARVESFELDHNTVKAPYVRLAGTEQNGDALVEKYDLRFLQPNKDALPTGALHTLEHLLA VNMRDELKGIIDISPMGCRTGFYMIMWDQHSPQEIRDALVNVLNKVINTEVVPAVSAKEC GNYKDHSLFAAKEYAKIVLDQGISLDPFERIL >gi|307679236|gb|GL457011.1| GENE 3 1522 - 2589 1253 355 aa, chain + ## HITS:1 COG:L66199 KEGG:ns NR:ns ## COG: L66199 COG0136 # Protein_GI_number: 15673604 # Func_class: E Amino acid transport and metabolism # Function: Aspartate-semialdehyde dehydrogenase # Organism: Lactococcus lactis # 4 350 3 348 358 468 67.0 1e-132 MGKEYHVAVVGATGAVGTRMIELLAETSLPIASVRLLASKRSAGQEIQFKGQPLIVEELV PESFEGIDLALFSAGGSISEKFAPEAVKRGAVVVDNTSHFRMAKDVPLVVPEVNPEALKN HQGIIANPNCSTIQMMVALEPIRQAFGLERIIVSTYQAVSGAGIRAINELKEQAEDFLEG KPVSEWSAEILPAGSDEKHYPIAFNALPQIDVFSEAGYTYEEWKMMNETKKIMGDNKLKV VATCVRIPVISGHSESVYIEVKQADASVSAIQELMAQAPGVILQDEPSEQLYPQALNSVN QKETFVGRIRQDVDVKNGFHLWIVSDNLLKGAAWNSVQIAETLHEMNLLRVPEND >gi|307679236|gb|GL457011.1| GENE 4 2623 - 3495 923 290 aa, chain + ## HITS:1 COG:L0093 KEGG:ns NR:ns ## COG: L0093 COG0329 # Protein_GI_number: 15673602 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Lactococcus lactis # 3 288 10 295 297 375 65.0 1e-104 MDLTNATIITAMVTPFQESGEIDFDKLPQLVDYLLANHTEGVILAGTTGESPTLTHEEEL QLFQRIIELIDGRIPIICGVGTNDTRDSVAFVKELATIAGIDAVLAVVPYYNKPNQEGMY QHFKTIAEASELPIILYNVPGRTAACLEVETTLRLAQLEKIVAIKECAGLDAITELIERA PKDFLVYTGEDGLAFATKALGGQGVISVASHVFGSSMYEMYQALEQGNLPEAAKIQRQLL PKMNALFSVPSPAPVKAALNHLGIPVGNLRLPLVACTPEEEQRIIRTLEI >gi|307679236|gb|GL457011.1| GENE 5 3526 - 5214 1925 562 aa, chain + ## HITS:1 COG:SP0613 KEGG:ns NR:ns ## COG: SP0613 COG0595 # Protein_GI_number: 15900521 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Streptococcus pneumoniae TIGR4 # 1 552 1 552 553 696 60.0 0 MSTIKIVPLGGVRENGKNMYVAEVEDEIFVLDCGLQYPENELLGIDVVIPDFTYLEENSE RIAGVFLTHGHADAIGALPYLLSKIQVPVFGTELTIELAKLSVNSHAETKKFKDFHVIDP HTEIDFGQATVSFFKTTHTIPDSIGVSIKTKEGNIVYTGDFKFDQSAIEMYQTDYGRLAE IGKEGVLALLSDSSNAENPAQVASEAQIADEVFDTIRYWEGRIIVACVASNLQRVQQVLN AADRSGRKVVLTGQDFERIIRTAMKLEKLQLPSEDLLVKPKEMKKYAPEQLLILETGRMG EPIKSLQKMANNTHGVVRIEEGDLVYITTTPTTAMETTVAKTEDIVYRAGATVKQISDNL RVSGHANPNDLQLMLNLMKPKYFIPVQGEYRQLAAHADLAHEIGMPYKDIFITGRGDILE YTKGRMSVAGSTTAENIMIDGIGVGDIGNIVLRDRRILSEDGIFVAVVTINRREKRIVSP AKITSRGFVYVKTSKDLMKESSNIVTEIVEKHLESDDFEWSKLKQEIRENLSRYLFEQTK RRPVILPVIMEATQRKRPKNNA >gi|307679236|gb|GL457011.1| GENE 6 5339 - 6721 1281 460 aa, chain + ## HITS:1 COG:L181858 KEGG:ns NR:ns ## COG: L181858 COG0737 # Protein_GI_number: 15672159 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Lactococcus lactis # 1 453 1 444 447 307 37.0 2e-83 MEEIVLFHTNDLHSHFENWPKIRRLVKAKRSLYQKEGKTVVTIDLGDFSDRCHPLTEATD GRANVAIMNTLAYDLVTIGNNEGIGKSKKQLEHLYDQATFEVVLANLEEPKTQTLPDFCQ AYKIMTTKEGTKLGFIGLTAPFPLTYNPNGWTIKQVEAVLPQLITEVAPQCDVLILLSHL GIDTDFMIAANYPEIQVILGSHTHHLFKDGEKINHVQLAAAGKYGQYIGEVHLFVDADTK QVTSYAKTIETASLEEQATDAKEIAGYLTEGHRLLQAQQIAQIPETLSTDLRQPHAFITV ALKALKEAGQTEAAVLNNGLFLADLPEGIINADQLHEALPHPMHLIKVTLKGSDMSRLIR EMEKSRQFLRKFPIRGMGFRGKIFGELCYDGIRFERNSQTVFWQGKPIQPEQKYTLTTVD HFQFVPFFPTIELVGEVEFLFPDVLRTVVANYLHAHYPIK >gi|307679236|gb|GL457011.1| GENE 7 6756 - 7391 887 211 aa, chain + ## HITS:1 COG:lin2501 KEGG:ns NR:ns ## COG: lin2501 COG4470 # Protein_GI_number: 16801563 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 53 139 3 89 91 126 65.0 2e-29 MTDKKTTEKKEKETETAATFTEELTAVLEEIKEEPVKEKKKGEIVTIVNETDIQIGEREY RIVKNHRDAFDPERLGERFSEVLARYDYIVGDWGYEQLRLRGFFDTSNRRAAPDQRIDTL EDYLYEYCNFGCAYFVIERTGERKEKTTHRRRRHKKNNRSNAFVEEKSAPANKNSKPVIR TRKEENKKTTTPKQPSSKKSGKGFTIRQREE >gi|307679236|gb|GL457011.1| GENE 8 7397 - 8167 1073 256 aa, chain + ## HITS:1 COG:SP1407 KEGG:ns NR:ns ## COG: SP1407 COG0647 # Protein_GI_number: 15901261 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar phosphatases of the HAD superfamily # Organism: Streptococcus pneumoniae TIGR4 # 5 256 3 254 257 316 63.0 3e-86 MKKDYQGYLIDLDGTIYLGKEPIPAGKRFVEQLQEKDLPFLFVTNNTTKSPETVAQRLAN EFDIHVPASLVYTATLATIDYMKETNRGKKVFVIGEAGLIDLILEAGFEWDETNPDYVVV GLDTELSYEKVVLATLAIQKGALFIGTNPDKNIPTERGLLPGAGSVVTFVETATQTKPVY IGKPKAIIMERAIAHLGVEKEQVIMVGDNYETDIQSGIQNGIDSLLVISGFTPKSAVPTL PTPPTYVVDSLDEWTF >gi|307679236|gb|GL457011.1| GENE 9 8170 - 8808 501 212 aa, chain + ## HITS:1 COG:SPy1044 KEGG:ns NR:ns ## COG: SPy1044 COG4478 # Protein_GI_number: 15675040 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 10 196 3 192 210 100 36.0 1e-21 MMRSKLRLRETLGLICLFLTIVALSITITINFRPLYLFDIQHLNILKDVEVDRVTLIKNY DHLMMYLNNPFEKTLVFPDFPMSDSAAFHFYEVKKLFLLCYGVLLVTLMPSVLYLKYLVK NQRLWTLIRPFQWGMFLPVLFGFFMLIGFDQFFIAFHGLFFNNDAWLFNPLTDPIINALP EAYFMHCFILFFVLLEGLFLIGVLIGKRSLKK >gi|307679236|gb|GL457011.1| GENE 10 8935 - 9504 711 189 aa, chain + ## HITS:1 COG:no KEGG:EF1190 NR:ns ## KEGG: EF1190 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 189 1 189 189 330 100.0 2e-89 MDEIEKSLQNWGQQLENVHLPRWHELPDIELYMDQVITLIEKYLSPLITLEKHTLLTSSM VNNYVKHGLIPAPVKKRYNQKHLAFLIAITLLKQVLTLPEIKQGILFQGATVGIREAYNL FCQEQERAIYVIAAQAQEKEVQAKSQEPMGIEYLAVKAATMSFATKMFSEKVIELEQEYL KEMDEMTHE >gi|307679236|gb|GL457011.1| GENE 11 9497 - 10357 1092 286 aa, chain + ## HITS:1 COG:CAC1624 KEGG:ns NR:ns ## COG: CAC1624 COG1307 # Protein_GI_number: 15894902 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 4 281 2 277 280 212 41.0 5e-55 MNKEKIALLVDSGTDVPEALVKQYGMYVLPLQIIYPEKTYTDKVDITPEEVYQRLEKEIP STSLPDGATIQAIFDKIKEVGYEKVLAVTISSGLSGTYNVVRLLGEQTEGLDVFVLDTKN IGIGAGIQAIRAAELIETGLGWQELQQKLTEEVANAKVFFNVATLEYLQKGGRIGLVTSI LGNALKLNPIISCNEEGIYYTVAKSRGRKKSLDKTFELVTNFIGEAPRFRLAVAHGAAEE EAKAMMERLKAAFPQAEEIYFGTISPALVVHTGPGLLGVGIQLLND >gi|307679236|gb|GL457011.1| GENE 12 10511 - 11176 937 221 aa, chain + ## HITS:1 COG:SP1778 KEGG:ns NR:ns ## COG: SP1778 COG0580 # Protein_GI_number: 15901607 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Streptococcus pneumoniae TIGR4 # 1 221 1 222 222 195 59.0 7e-50 MKKAIAECLGTFILVFFGTGTAVLGNGMEGIGTTGIALAFGLTIVAAAYSIGTISGAHLN PAVSIGMWLNKRITTMELIYYVVGQIVGGLIASFALLSILKGAGKSIENLGQNGVGELSV AGAMTVEIILTFIFVLVVMTVTSAKKGNASLAGIVIGLTLTMIHLVGIPLTGTSVNPARS IAPAVFAGGSALSELWIFIVAPLIGGLLAALVAKFVLDTEE >gi|307679236|gb|GL457011.1| GENE 13 11350 - 12054 1092 234 aa, chain + ## HITS:1 COG:lin0315 KEGG:ns NR:ns ## COG: lin0315 COG0745 # Protein_GI_number: 16799392 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 2 234 4 237 237 357 81.0 1e-98 MKKILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDG LEVAREVRKTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGA TNAKEAEVTTQSELTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREH LLQTVWGYDYFGDVRTVDVTVRRLREKIEDSPSHPTYLVTRRGVGYYLRNPEQE >gi|307679236|gb|GL457011.1| GENE 14 12061 - 13890 1897 609 aa, chain + ## HITS:1 COG:lin0316 KEGG:ns NR:ns ## COG: lin0316 COG5002 # Protein_GI_number: 16799393 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 4 609 3 610 610 525 46.0 1e-149 MKKKVHFFQSVNFKIALSFILLLLIAIQIIGGYFIRELEATTISDFKKNMDSQVVQLSNT LSTQMSNKDLERSDVDANLKKALSDFSNADISEARIVDDKGIIRATNDLNQQNIIGKKND YRDLNDFTSKKYQALDNDKRVYVNVQPIQSPTGETVIGVLYVKSNLENKYQEITNTASIF FTASIIAAAISIIVTLLIARSITKPIGEMREQAIRIARGDYAGKVEVHGKDELGQLAETF NQLSERIEEAQETMEAERNRLDSVLTHMTDGVIATDRRGKVITINEMALSLLNVKNENVI GTSLLELLDIEEDYTLRKLLEEPDELLIDRSTSDREEDQMIIRVDFTMIRRESGFITGLV CVLHDVTEQEKNERERREFVSNVSHELRTPLTSMRSYIEALSEGAWENPEIAPNFLKVTL EETDRMIRMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRRE FTKRDLWVELDTDKVIQVFDNILNNAIKYSPDGGVITCRLVETHNNVVFSISDQGLGIPK KDLGKVFERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLPY EPYEEDWWE >gi|307679236|gb|GL457011.1| GENE 15 13890 - 15197 1172 435 aa, chain + ## HITS:1 COG:lin0317 KEGG:ns NR:ns ## COG: lin0317 COG4863 # Protein_GI_number: 16799394 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 12 420 12 429 440 64 21.0 5e-10 MKLSEWITRIGLILMVILSIYFSVNIWLNSAKKIPEMKSGSQVTTAVNEKAIGDVYLPLQ LIRIADGKAMQSKRETLISNVQNDIKMATFGKLTQVVTKNAEQLKRYNQMEQGIELLYQG PFLISDYASIYNLSINFTNFNELTDQYFTKIQLDFNENKIRFLDYDQSNVYEAPMTVNKA RLMGIINKEGLQYQDVSENTLTKQGQCYLTNDMKLKKYSYILASQPVTRFRNAFFNETED IQTNEDSQDLTYTSKEERLFAEEKLGKIDFKGTLPEENKRDSIYNQSFSYVKRLGTNMGN LRYFDRTKDSVNYRTFVEGFPVFSNDLKGQVDIRITNNDGAAPSVTINTSVNTIQVPIPS EEEVTLESTEKLIKRLETAGAKKEKIQSAVIGYTWQTIEEVKQVVDLSPEWYVLYNNNWY TATDLVKQLPSLEVG >gi|307679236|gb|GL457011.1| GENE 16 15197 - 16051 757 284 aa, chain + ## HITS:1 COG:no KEGG:EF1196 NR:ns ## KEGG: EF1196 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 284 1 284 284 525 100.0 1e-148 MDFKRIEWIFFLAFLGLNIFLFGIYREGQQEESNVSSSSQTESIESRLEKDNISYKGTLS SERLEGYYLSGEQTNFSAALKIQREKNKNFLRNGLQIADNTLTSVPSKNYFIDPKKIDKD LSTFLNEKNALLFGDEYQYLPEFSHLKEPTAEIVAAQSYKGIPFRDDTAKLSILADTSGE LWKISKYSQTHIENIEELRDKTDLYSNRDAIDTLYMNNRIPSNSKITFIKLAYSRIYKIR EKNVYVPVWFVGISTGEDSVEIEQVNAVSNTIITNNTVPKVEKH >gi|307679236|gb|GL457011.1| GENE 17 16108 - 16914 934 268 aa, chain + ## HITS:1 COG:SP1225 KEGG:ns NR:ns ## COG: SP1225 COG1235 # Protein_GI_number: 15901087 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Streptococcus pneumoniae TIGR4 # 3 268 2 269 269 377 69.0 1e-104 MDSEFAFNISVLASGSTGNSLFIETNQKKVLVDAGLSGKKITSLLAEVNRKPEDLDAILV THEHRDHIHGVGVLARKYKLDVYANEKTWQAMDPMIGKVDVAQKHIFEMGKVLTLGDMDI ESFGVSHDAIAPQFYRFHRNNRSFVVLTDTGYCSDHIRGTIENADAYLVESNHEIEILRA GPYPWSLKQRILGDKGHLSNDDGALVMADVLGDKTKRIYLGHLSKENNTKLHARMAMEST LKQKDLGVGEAFKVYDTDPDSASELFQI >gi|307679236|gb|GL457011.1| GENE 18 17125 - 18039 857 304 aa, chain + ## HITS:1 COG:SPy0576 KEGG:ns NR:ns ## COG: SPy0576 COG0701 # Protein_GI_number: 15674665 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Streptococcus pyogenes M1 GAS # 1 304 3 297 300 290 53.0 4e-78 MFQFLPNSVLQMSTIFLSIIIEALPFVMLGCLISGALHVFLTPERVKKVLPKNKFLSICV GSFLGFFFPSCECGIVPIVHQFVKKDVPTHTAFAFMLTAPIINPIVLFSTYVAFSGATKF VIWRVLGSMIVAWVIGIWLAYFRKESILTEKELAQIKEEQVAHTHEHVDEARSFWKNGWS ALTHSIDEFFDTGRYLIFGSLLAAIMQTYIPTGALMQLGHSKILAILVMLVIAATLSLCS EADAFIGSSLLSLFGTGPIVAFLVFGPMVDIKNLLMMKRYFKMSFIVQFVLIVALVVTIY AAVV >gi|307679236|gb|GL457011.1| GENE 19 18058 - 18924 902 288 aa, chain + ## HITS:1 COG:lin0922 KEGG:ns NR:ns ## COG: lin0922 COG3689 # Protein_GI_number: 16799993 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 1 288 1 279 279 267 48.0 1e-71 MIRFIILIGYMGLMMYLQISGELNQYINIHYNYLAVLSMVLAFIMAIVQLILWNQADPSM QKKHEDMHQHGGHEHHGHQHNLEKPSQRGLAYLLLSLPLIVGLLFPTVSLDTTIVEAKGF NFPVSKESVGDPDMQTQYLKPDTSMYFNKTDYDKQMAKAMKQYDGQSVISITDENYLEIM ELIYNYPSQFAGKRISYKGFVYNSKREESVDQFVFRFGIIHCVADSGVFGLLVHFPEHTQ FQNNDWVTITGTVELSYYPPFKRQIPTVQVEKVKADQAPKNQYVYRSF >gi|307679236|gb|GL457011.1| GENE 20 18977 - 19468 548 163 aa, chain - ## HITS:1 COG:lin0586 KEGG:ns NR:ns ## COG: lin0586 COG3610 # Protein_GI_number: 16799661 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 5 151 7 152 152 157 55.0 7e-39 MLGIVLVQFIFSFLASAAFAIIINVPRRSLVACGLTGSVSWMLYWVIVEVFSGNAALGSL IGAVGVAAVSYLFSKILKMPVTIFNIPGIVPLVPGGLAYQAVRNIVIGNYEKGAYFTVQA VMIAGAIALGLVASEVFNQNIRSFREKRESLGFIRRKRNKIKK >gi|307679236|gb|GL457011.1| GENE 21 19483 - 20235 704 250 aa, chain - ## HITS:1 COG:lin0587 KEGG:ns NR:ns ## COG: lin0587 COG2966 # Protein_GI_number: 16799662 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 249 1 249 250 241 52.0 7e-64 MTPAHLDLLLETCLLAGKIMIESDAEMYRVEDTMSRIALASGNYRMVSYVTQTGLFVGID GTSTIRMVQVMKRGIDLEKISRVNQLSRAYVAGDFSLEELLNKLKVIDSEHRHFPISARI VSAAVVSATIMILFGGVWSDLFLTSLIGGCGYSLYYFSLKFLKIKFLSEFLASLFIGAAA ILSVKLGLGQSQDLIIIGCVMPLVPGVQITNALRDLLAGHYLSGVSRGTEALMTSGMIGF GIAFVFQLFY >gi|307679236|gb|GL457011.1| GENE 22 20671 - 20940 508 89 aa, chain + ## HITS:1 COG:SPy2114 KEGG:ns NR:ns ## COG: SPy2114 COG4472 # Protein_GI_number: 15675864 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 89 1 89 89 128 73.0 2e-30 MGFTDETVRFDFDDNRKKAISETLETVYRALEEKGYNPINQIVGYLLSGDPAYIPRYQDA RNLIRRHERDEIMEELTKYYLANHGIDIK >gi|307679236|gb|GL457011.1| GENE 23 20946 - 21359 440 137 aa, chain + ## HITS:1 COG:SPy2113 KEGG:ns NR:ns ## COG: SPy2113 COG0816 # Protein_GI_number: 15675863 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) # Organism: Streptococcus pyogenes M1 GAS # 1 133 4 136 139 191 71.0 3e-49 MGLDVGSRTVGVAVSDLLGWTAQGIEIIRINEEEENFGFERLGELVKEYEVTKFVVGLPK NMNNSIGPRAEASMAYGDKIQELFQLPVDYQDERLTTVQAERFLVEQADASRAKRKKVID KLAAVMILQNYLDAHSR >gi|307679236|gb|GL457011.1| GENE 24 21397 - 21702 534 101 aa, chain + ## HITS:1 COG:SPy2112 KEGG:ns NR:ns ## COG: SPy2112 COG3906 # Protein_GI_number: 15675862 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 4 98 3 100 101 96 71.0 1e-20 MTEHNHDHDHEGHEHITLVDEQGNETLYEILLTVDGQEEFGKNYVLLYPAGIPEDEDVEL QAYSYVENAEGTEGDLQQIETDAEWDMIEEVFNTFMAEEEE >gi|307679236|gb|GL457011.1| GENE 25 22041 - 22103 246 20 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFDLLALLTGISVRGNAPHQ >gi|307679236|gb|GL457011.1| GENE 26 22203 - 23051 1026 282 aa, chain + ## HITS:1 COG:no KEGG:MPTP_1291 NR:ns ## KEGG: MPTP_1291 # Name: not_defined # Def: Cro/CI family transcriptional regulator # Organism: M.plutonius # Pathway: not_defined # 1 281 1 281 281 426 81.0 1e-118 MRVAGEKIKTARKKKKLSQAELAKGICTQATISNIENKNVCDSLDIFSSVCLRLDLQVEE CIEGSSEKKLESLLNKVEELCFYFKHDEAYDLLKDYPDDIESSNRILETKFFYYKGITSL LGKKNNSEALFYLHRGSEISRDINIYNILSMNAIGILYELEDDIEKAKVYYDKSLQLLSE FKLDYPLEQCRIYYNTAKFYSLIKDYAKSIELSDKGIEINRTHSSIYSLDCLLYEKAFNK QMLGLDAVEDYRIAYYFTRFFENKKLLTYIEKDMQEFNISFK >gi|307679236|gb|GL457011.1| GENE 27 23123 - 24292 1488 389 aa, chain - ## HITS:1 COG:SPy1110 KEGG:ns NR:ns ## COG: SPy1110 COG0281 # Protein_GI_number: 15675092 # Func_class: C Energy production and conversion # Function: Malic enzyme # Organism: Streptococcus pyogenes M1 GAS # 8 385 7 385 388 550 75.0 1e-156 MSTKDVKELAIEQAKKFGGKLEVCPKVPIETKADLGIAYTPGVAAVSSAIYEKKERAYEL TTKKNTVAVISDGSAILGLGNIGPEAAMPVMEGKAALFKRFAGVDSIPLVLDTQDTEEII QTVKFLAPTFGGINLEDISAPRCFEIEQRLIDELDIPVFHDDQHGTAIVVLAALYNSLKL INKKIEDIHVVINGGGSAGLSITRKFLAAGVKHIIIVDRTGILSETDTALPPHHAEIAKL TNREHRTGDLATALEGADVFVGVSAPGVLKPEWIQQMNEQPVIFAMANPVPEIFPDEALA AGAYIVGTGRSDFPNQINNVLAFPGIFRGALDARAKKITIEMQIAAAKGIAKLIPDNELT PTNIIPDPFQEGVAKVVAESVRNAVKETN >gi|307679236|gb|GL457011.1| GENE 28 24324 - 25649 1485 441 aa, chain - ## HITS:1 COG:SPy1109 KEGG:ns NR:ns ## COG: SPy1109 COG3493 # Protein_GI_number: 15675091 # Func_class: C Energy production and conversion # Function: Na+/citrate symporter # Organism: Streptococcus pyogenes M1 GAS # 1 441 4 442 443 617 77.0 1e-177 MEKKLPATAANETDWRNKLTKTRIGSVTLPVYLVTASIILVTALLEQLPVNMLGGFAVIL TMGWLLGTIGGNIPILKHFGGPAILSLLVPSIMVFFNLLNQNVLDSTDILMKQANFLYFY IACLVCGSILGMNRKILVQGLMRMIVPMALGMILAMGVGTLVGTLLGLGWKHSLFYIVTP VLAGGIGEGILPLSLGYSAITGLPSEQLVGQLIPATIIGNFFAIMCSGLLSRLGEKRPEL SGQGQLIKITNSDDLSDALEEDKAPIDVKLMGAGVLIACTLFITGGLLQHLTGFPGPVLM IVVAAFLKYLNVVPKETQRGSKQLYKFISGNFTFPLMVGLGMLYIPLKDVVGMLSWQYFV VVISVVFTVIATGFFVSRFMNMNPVEAAIVSACQSGMGGTGDVAILSTANRMNLMPFAQV ATRLGGAITVITMTAIFRMLF >gi|307679236|gb|GL457011.1| GENE 29 25797 - 27347 1719 516 aa, chain + ## HITS:1 COG:SPy1107 KEGG:ns NR:ns ## COG: SPy1107 COG3290 # Protein_GI_number: 15675090 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase regulating citrate/malate metabolism # Organism: Streptococcus pyogenes M1 GAS # 1 509 1 507 513 328 36.0 1e-89 MKRGGKLWCFLSVIFIATLIIMITFFYGVTTVQTIKEVRKNQEQALLAVGEQLAIEPNVI EALKNDHYSDELEAYTVRLGEIHQLDFIVIMNMQGIRLTHPDRQKIGKHFEGGDEVRALK GEEHLSVSQGSLGESLRGFVPVYDQGKQIGVVAMGIKMTSLSQLIERTKNDYTVSVLLSV GFGFILAIVVSYYLKKQLHDLEPREIARLLEERNAMLEETKDAILVIDTDQNILLANIEA TKMYHNITNSEENLLGKKLSALVLSPEKLIVHSKTEQFYRQNGQDYFVSIAPINVRKKTI GHVIFLKNATETFIVAEQLVSTTTYASALQSQSHEFMNKMHVIYGLVDLEDYEALKHYLA DLLKPEKEFAQRLAILVRNPILAGFLSGERIKFAEIKTQLAIEIYPEIPPNKRDEDTQNL IAIYRYIHRFLMEQTLPEEIIETIDYQPGSLTTTYSFAYPKEQLERFEQEFFTSYLARLL ENAEATLTWENQQNNWLVLRINVHYEGAEENEPIDY >gi|307679236|gb|GL457011.1| GENE 30 27328 - 28020 472 230 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149011191|ref|ZP_01832496.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP19-BS75] # 1 229 1 223 226 186 45 8e-46 MNLLIIEDDPMVAYIHQKYLEKLIHQPTIFTVATIAEGLQLTKEKQPVLVLLDVHLKDGN GLTYLATIRDEKIDTEVILITAANELENVKRSLHLGVLDYLVKPFSFERFQQSIENYQKK AAQFTLETKELSQTKVDQLFHSSQTNARKNEQALQNLSLEKGLTQATLQLLLKKIDEFTD YFTIQELSEASQLSHVSVRKYVLFLEKNNLLESKNSYLKVGRPYQSYRRI >gi|307679236|gb|GL457011.1| GENE 31 28206 - 29549 1952 447 aa, chain + ## HITS:1 COG:pli0044 KEGG:ns NR:ns ## COG: pli0044 COG0446 # Protein_GI_number: 18450326 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Listeria innocua # 1 445 1 445 454 363 45.0 1e-100 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSCGMQLYLEGKVKDVNSVRY MTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDI PGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDI LDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVV AVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALAT NARKQGRFAVKNLEEPVKPFPGVQGSSGLAVFDYKFASTGINEVMAQKLGKETKAVTVVE DYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYA DFFFQPAFDKPWNIINTAALEAVKQER >gi|307679236|gb|GL457011.1| GENE 32 29602 - 30513 1071 303 aa, chain - ## HITS:1 COG:BS_lytR KEGG:ns NR:ns ## COG: BS_lytR COG1316 # Protein_GI_number: 16080618 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 22 300 24 304 306 248 43.0 7e-66 MSKGKKIFAIIFGIILVLFLAVVGMGAKLYWDVSKSMDKTYETVERSKKSQVNLNNKEPF SVLLLGIDTGDDGRVEQGRSDTTIVATVNPRDKQTTLVSLARDTYVDIPGQGKQDKLNHA YAFGGASLAMDTVENYLNIPINHYVSINMAGLKELVNAVGGIEVNNNLTFSQDGYDFTIG KISLDGEQALSYSRMRYEDPNGDYGRQERQRKVIEGIVQKVLSLNSVSNYQEILTAVSDN MKTDLSFDDMKKIALDYRSAFGKVKQDQLQGTGFMQDGVSYQRVDEQELTRVQQELKNQL NTK >gi|307679236|gb|GL457011.1| GENE 33 30715 - 30834 59 39 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIKLSTMISDPFLLTVIPPIKICTNYKYKNTTKILINQQ >gi|307679236|gb|GL457011.1| GENE 34 30791 - 32443 2043 550 aa, chain + ## HITS:1 COG:SA2008 KEGG:ns NR:ns ## COG: SA2008 COG0028 # Protein_GI_number: 15927787 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Staphylococcus aureus N315 # 5 547 8 551 554 695 64.0 0 MSKKGSDIIVESLINHEVPYIFGIPGAKIDGVFDALVDKGPELILARHEQNAAFMAQGIG RLTGEPGLVIATSGPGASNLATGLVTATAEGDPVLALAGQVKRSDLSKLTHQSMNNAALF SPITKFSTEIQDPETLSENIANAYRIAKTAKKGATFLSIPQDVTDSPVTGEAIKPLSAPK LGHASAETIAALAERIKQAKLPVLLLGMRASARKVTAAIRELVAITGLPVVETFQGAGII SKELEEHFFGRVGLFRNQPGDRLLKRSDLVIAIGYDPIEYEARNWNAEKDARVIVIDEVQ MEIDQYMQPEEELIGDMSKNILKLSEAFSEPILTEDAQDYLETLQEKLTIKEVKTSTIEN RLHPLEIVQTLQEKTTNEMTVTVDVGSHYIWMARHFRSYEPRHLLFSNGMQTLGVALPWA ISAALVRPNTQIISVSGDGGFLFSAQELETAVRLKQNIVHIIWNDGSYDMVKFQEEMKYN RSSGVDFGPVDFVKYAEAFGAKGVRVHSQAEFAAALEEGMQTEGPVIIDVPVDYSDNQEL GKTLLPDQLY >gi|307679236|gb|GL457011.1| GENE 35 32455 - 33159 843 234 aa, chain + ## HITS:1 COG:SA2007 KEGG:ns NR:ns ## COG: SA2007 COG3527 # Protein_GI_number: 15927786 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Alpha-acetolactate decarboxylase # Organism: Staphylococcus aureus N315 # 6 234 5 234 234 232 51.0 3e-61 MSEQYVYQHGTLGGLMESLMAGTAEIGTLLTQGDFGIGTLEGSNGEIILLDGTLYHANQT GEITILEGEELTPYAAVTRFQEDGAFPVSTETDENIKAQILEKISPNFFAAIKISGLFAK MHVRVAPKQEKPYPPFVEAARNQPEFTAENIQGKVVGFFTPKLFHGASAAGFHLHFISED HQFGGHILDFGIKQGTVSWMETAELRQHFPVHDADYRNKEIDIAKALSAIEEAE >gi|307679236|gb|GL457011.1| GENE 36 33317 - 34399 875 360 aa, chain + ## HITS:1 COG:no KEGG:EF1215 NR:ns ## KEGG: EF1215 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 360 1 360 360 661 99.0 0 MDTLYRSWQLSGWLYHDIFVIIVAIIFIVISGILVISLIRRRSTRRLVPYALILLVYLAV IHFAGLIFFGMFRSVTIEEKSATFYSEKTKGLTSIERMIIPNGRTNGISTSNSLFQVISV NSQTGERMWSKRLGWRDYLIGQTDQYVVLNNADNEAIYLLDTKTGKKQFSEADLVKKFPE LKDYLSSDFVDYRFMDNRYLYIYGLNNRYYQLDLKNWQLKQDPTFKEVFQTQEAPKWTVD SNESQIGQELSSEERTTVQGKLEEQLIAPVLLGKKDEANYYVLSYKKRQSNQAIVGLYNW QKKTYEWQTPLLLTKENVPIEAFQVEDALFIKVPRYLYKINLNNGNQEYQFDYRWGQVIR >gi|307679236|gb|GL457011.1| GENE 37 34417 - 34479 92 20 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLRQIEGANSPYDIKKRLEE >gi|307679236|gb|GL457011.1| GENE 38 34513 - 35232 785 239 aa, chain - ## HITS:1 COG:no KEGG:EF1216 NR:ns ## KEGG: EF1216 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 238 1 238 239 463 98.0 1e-129 MKQKNLLTYQSLAALLLVFSLFSFDPSVSFATRSGKTPVSVELEIGGLPGDESVDDAIYP DLENPNTSFDLLFIPKEFTFETQAISGDLTAVPIRPSEGNTHTMRHFGMGDVRGALTGWH VTAEIPHMRNEAHSLLGIITFQLTGGYARYDKTLRRFFMTNTMYGLDFSEDPAAPDFPTN PIIIGNGATLMSNAGDKKGQGMWSGRMTDISLAIQTPVSQLFPGAYTGSIIWNLISGPA >gi|307679236|gb|GL457011.1| GENE 39 35481 - 35885 498 134 aa, chain + ## HITS:1 COG:no KEGG:EF1217 NR:ns ## KEGG: EF1217 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 134 1 134 134 234 97.0 9e-61 MSKCFGLLMILFVLSGCSGSRNSQQEVVIEKSANNDKARQFVDQKNPHLGTQLEAESYTK QEAIEFLQNGLGIPTNDSAFHYTFKQSNKGSYVVQIISEKNSVSKENELFGYYQVYQDGI IVKMMEKDQTFQEN >gi|307679236|gb|GL457011.1| GENE 40 36093 - 36929 1020 278 aa, chain + ## HITS:1 COG:AGl889 KEGG:ns NR:ns ## COG: AGl889 COG1176 # Protein_GI_number: 15890561 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 21 257 74 310 326 175 39.0 9e-44 MNKKVPYLIVAPGLVLLLFFLMIPLITSILPTIFTDHGLTLNQYVTFFKDDYNVSIFWRT IRVSLIVTGISIVLGIPTAYFIAGVSKKWRGFLMAMTLFPLLTNSVIRSFAWINILGKNG VVNTLLLKTGLIEQPLNLLYTEFAIIIGSVYLFLPTMIMTLVGVMENIEGEMLEAAETLG ANPMTAFRKIVLPLSIPGTIVGSILVFTGTLTAYTTPQLLGGNQKMMMSTFLYQKANTLG DWQSASVLAFIMILTTLIVMKGLDMVAKKVDRREANHA >gi|307679236|gb|GL457011.1| GENE 41 36922 - 37701 824 259 aa, chain + ## HITS:1 COG:SMb21275 KEGG:ns NR:ns ## COG: SMb21275 COG1177 # Protein_GI_number: 16264527 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Sinorhizobium meliloti # 10 256 10 256 259 189 44.0 6e-48 MRKQKGLSVIAILVFLFLFLPLCLIVVTSFGTAAAIQFPIKGFTLDWYAKALQSETFMDS FKLSLLIGVLATVLALIVGIPASYALARYSVRGRNFIKSFFLSPTVIPGIVVGYTLFQYI VIKLGLPVFQGLLMGHFLISLPYIIRVVGSSMEQLDYSMEEVAWTLGCTRLRAFIQIVLP NVSSGIFAAFMLAFVNSFNNVPVSMFLSGPGVTMLPTSLLSYMEYNYDPTVSAISVLLML LTMGLMFLIEKTLGLASIA >gi|307679236|gb|GL457011.1| GENE 42 37740 - 38780 1219 346 aa, chain + ## HITS:1 COG:SMb21276 KEGG:ns NR:ns ## COG: SMb21276 COG3842 # Protein_GI_number: 16264528 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Sinorhizobium meliloti # 3 346 6 340 342 299 45.0 4e-81 MTFVDLKDIRVSYDGKQDILKDLNISMEKGELVSLLGPSGCGKTTTLRVIAGLIKPNDGQ FFVDQEELTKVPVHKRNFGMVFQSYALFPHLTIAENVAFGLKLRKENKQTMDQKVTEMLK VCGLESLGDRYPKQLSGGQRQRVALARALIIEPKLLLLDEPLSNLDAKLRVAMRIEIKRI QQQLGITTVFVTHDQEECFSISDKVAIMNNGVIEQYDSPETIYRLPRTKFVAEFIGFENF FSVEKMEAGHYRTQTNQIVKTTNPEPNVTTTVATIRPEDIEIVSEAATNTVAGTVAVRTF LGKSYQYEVETALGTLLVNGTSEQLYETNETIHLAFPAEKLVILEK >gi|307679236|gb|GL457011.1| GENE 43 38807 - 39871 1403 354 aa, chain + ## HITS:1 COG:AGl890 KEGG:ns NR:ns ## COG: AGl890 COG0687 # Protein_GI_number: 15890562 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 10 354 6 340 340 143 29.0 7e-34 MKKRVILGTLVAATLLMTACGNSEATTKSESKGGSNALVVSTFGLSEDIVKKDIIAPFEK ENEAKVTLEVGNSADRFTKLKNNPNAGIDVIELAQANAAQGGKEGLFEKITEKEVPNLSQ LTPGAKEVFESGAGVPIAVNSIGIVYNKEKLGKEIKNWDDLWSADLKGKISVPDVATTAG PLMLYVASEHAGQDITKDNGKAAFEAMKELKPNVVKTYSKSSDLANMFQSGEIEAAVVAD FAVDIIQGAAENVTYVVPESGTYANYNTVNIPKKAQNKETAFKFVNARISEESQKAKAIS LNEGPTNQQVTLSEKEAKNKTYGAIAERAKTVDFNFINSQLADWIDQWNRTMNQ >gi|307679236|gb|GL457011.1| GENE 44 39892 - 41631 1744 579 aa, chain + ## HITS:1 COG:CAC0887 KEGG:ns NR:ns ## COG: CAC0887 COG1001 # Protein_GI_number: 15894174 # Func_class: F Nucleotide transport and metabolism # Function: Adenine deaminase # Organism: Clostridium acetobutylicum # 5 562 19 569 570 270 31.0 4e-72 MNVDVLLKNVWLYQTVTQTFVQRNVAIKNDKFYYIYEEENVNLQPKKTINAENQWMIPGL IDAHMHIESSMTTPTIFSKAVVRYGVTTVIADAHEMANVFGLEGLKAFMAAETELDIFHA IPSSVPSTTPELETTGGIIGLAEVAELLKEPKVICLGEAMNFKGISYEPDSLIRQIIDLC QKQRPTMPLEGHCPKIEDQELADFLYSGITSDHTHQFPKTLKEKIEAGVFIQFQNKSITP ENIQVIVDNDFYNYASIITDDVMADDLLKGHLNENVKKAVQAGLPIEKAIYMATYTPAKR MGLHDRGEIAPGKKADFLLLNDLESFDINTVYKSGKVVFEKGEPFHYPEKIEEFPATYQQ TIQCKRLTEEDLLLKVATTKETVRCNVIQKQEIGTFTERITKEIPVENGLLQWQKANCAL LIVMERYGKNGNISFSLMDQPLSEKGAIATTWAHDHHNLMVMGNTIEDILLAQNELLAMQ GGYLVASDQQVMATCPLPIGGILSQAPIEQLGASLQKVRQAMQALGYQNMNEIMSFSTLS LPVSPAIKVTDFGMMDTKSQRFYPLVFPEDGVLLHENTH >gi|307679236|gb|GL457011.1| GENE 45 41615 - 42943 1256 442 aa, chain + ## HITS:1 COG:MA1276 KEGG:ns NR:ns ## COG: MA1276 COG0402 # Protein_GI_number: 20090140 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Methanosarcina acetivorans str.C2A # 4 436 15 440 442 257 35.0 4e-68 MKTLIKNVHILTMDEQFSEIKAGYLVIEEDTIVELAPMTTLDEKRMAANQVIDGQNGILM PGMINTHTHVGMIPFRSLGDDVPDRLRRFLFPLEQFMTKELVGCSSDYAIAEMLLSGITS FCDMYYFEDEIAKSCEKMSVRALLGETIIDMPTCDSPEPSGGLFYAETFIRKWQGHPLIT PILAPHAPNTNSPEVLAKIIELSRRYQVPVTMHVAEMTYEMAEFEKAYQKTPIAFLEELG YLSEPFILAHCILATDEDLASLAATNGKARVAHCIGANTKSAKGVAPIKQMLDQGIIVGL GTDGPSSGNTLDLFTQMRMVANFHKTAHQDRSLFPAKEIVYLATMGGAKTLGLAEQVGSL EVGKKADITLIETQSVNMFPIFDAYSALVYSANASNVEAVWVNGQQLVANKELQQANLKE IKEKLYQAMNTFVKEAKKRAAL >gi|307679236|gb|GL457011.1| GENE 46 43149 - 44018 896 289 aa, chain + ## HITS:1 COG:no KEGG:EF1224 NR:ns ## KEGG: EF1224 # Name: not_defined # Def: Cro/CI family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 289 6 294 294 535 99.0 1e-150 MNIQRFIEKRKARGLSQSELAKGICTQVTVSRFEKNGQVPTLKILIQLCNRLELPLGELF PRVGIKQPEILEKMEEAEFFLITSEHDQLQTILKNIPFDEIKDSQLLLEYYYLQGFVMIF QNASLMDCLFTFEKLLFEEQKYTSDIYRLLAFTGIGMAYAKEGEIEKAEFYFNKVFKEIY LYTIQSMEDTWRVLNVVFHCGVFYAEKGDLETSDALLEYAISICSDNHVTYYLARAAFQL AKNALAEEKPQEQILELLQDARAYAKINKNRILLEAIQTLKETILSKNN >gi|307679236|gb|GL457011.1| GENE 47 44238 - 45173 948 311 aa, chain + ## HITS:1 COG:SPy1138 KEGG:ns NR:ns ## COG: SPy1138 COG1477 # Protein_GI_number: 15675115 # Func_class: H Coenzyme transport and metabolism # Function: Membrane-associated lipoprotein involved in thiamine biosynthesis # Organism: Streptococcus pyogenes M1 GAS # 1 302 1 303 312 301 51.0 2e-81 MQQSQTIYLMGTVIDVFVDHEEPEKILEEVHQRLITYEQRFSANDSTSELMAVNQQAGQK PVSVHPELYQLIALGKKHSCDPASHLNVTIGPLVQTWRIGFKDARVPSEEEIKACLKKIN PEKIHLNPLKQTVFLEEEGMKLDLGALAKGYIADLLIAYLKEVHVTSTLINLGGNIVTLG PSTHQNKKWRIGIRNPQKSRETISLLVEVANQSVVTSGIYERSLTEAGRVYHHLLDPTTG YPLETEMASLTIISDASVDGEIWTTRLFGYPIPEALEILNQLDGIEGVIITQDQQILYSS GLADTLHIIHS >gi|307679236|gb|GL457011.1| GENE 48 45200 - 45808 766 202 aa, chain + ## HITS:1 COG:SP1471 KEGG:ns NR:ns ## COG: SP1471 COG0431 # Protein_GI_number: 15901321 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Streptococcus pneumoniae TIGR4 # 1 202 1 201 201 247 60.0 1e-65 MKKIIGLVGTNSEQSTNRQLLQFMQHYFAQEADIELVEIVDFPMFNKPEDKVLPEIVKTV AEKIEAADGVIISTPEYDHAVPASLMNALSWLSYGIFPFVDKPVMITGASYGTLGSSRAQ AHLRQILDAPELKARIMPSSEFLLAHSLQAFDENNALKDSEQIDKLAGLFADFCVFIEIT EQLKHAHAQNKKEAENFSWETI >gi|307679236|gb|GL457011.1| GENE 49 45827 - 47083 1404 418 aa, chain + ## HITS:1 COG:SP1472_1 KEGG:ns NR:ns ## COG: SP1472_1 COG0431 # Protein_GI_number: 15901322 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Streptococcus pneumoniae TIGR4 # 1 187 1 187 187 258 65.0 2e-68 MKLIGIVGSNADSSYNRLLLQYIGKEFYKMFDLEILEIKDIPMFNQSKDQTNSVLIQNMN RKILQADGVIIATPEHNHTIPAGLKSVLEWLSFKIHPLENKPVMIVGCSYYDQGTSRAQL HLRQILDAPGVNAIVMPGNEFLLGKAKEAFDENGNLIAEGTRQFLESTLQKFVEFIDVIS KLEGAKPKDLPEDLHAKGTIETTIEGVDMAADDWVEQAAEAVQAVEGDTYVKLDRGILTV DQLNYFLKSMPMELTYADSNNQFLYYNKKMAAEEMFAKRQPGQVGNPLANCHPPKALKNV EWVIQQLRSGKTDAIRVHVPMHGPDTYVVHNYQAMYDDNGNYAGINEYILDFKPIVDWYL KQTGQELVGGKNVDAVSGASKKEAPETADSVSSASVHEEESATEKPTVDSVSSASIKE >gi|307679236|gb|GL457011.1| GENE 50 47495 - 48985 691 496 aa, chain + ## HITS:1 COG:no KEGG:EF1228 NR:ns ## KEGG: EF1228 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 496 1 496 496 935 99.0 0 MTTLLDELLDQEFRDKLLIYQTFMNSEGPLLKEEFYGYFDLSTQKLESLCRQINYECTQI SSRSQILFPAKGLISAQKLSQIDYQALRKYYFDQSLMAKLFLDVGLYQKHTIQEFSQIHF MSKSKIYAFSYKLNLILANWRIKLKSTGLVGEEKNIRSFCFQCLYYFYGSNQERLPNILL ENSPGIKQFINDLQLMYQRTFSLNQSAQLFILLTIQRFRVFSDHVVDSFTEVHVPSCLQH AFEKIYTSETPLFKEDFGKETSYIFLFLSLNEYIDSPIVFPDKLTMLDEFIDHMNSVIPF FEKRITVETKEKLKLICYRWDRLYFSVAAFIPAKQSSFFEERFPQIHRALDGFIQKTESL YQKRFLMYERVHLYYDFMFCLLNDRSFCAIEKTIHVFVDFSGGEDYNRFIAKIIASFNYM DVMIDHKLTLETDLYLSDFYSSKVRCRQLTWRHLPETKDWQVFAEVVRELRKGETQKNEH YGRDPIEMWREQEYEG >gi|307679236|gb|GL457011.1| GENE 51 48927 - 49610 458 227 aa, chain + ## HITS:1 COG:no KEGG:EF1229 NR:ns ## KEGG: EF1229 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 227 1 227 227 413 99.0 1e-114 MSTMGETQSRCGENKNTKDSQLRQAGNYKDLTGQKFGELTVVAPTAKRKEGLIVWACRCS CGSYTEASRRQLIRGYRTKCAHHRYQTMLKKNYHELVVVRIESIQQTMKAYCLCSCGQSC WVRCENLLNGHTKSCGHRKKKDYRQRVAGVIPGKLQSKRPKNNSSGHKGVSQTASGKWLA YISLKGKRHNLGIFTKKSEAILARKLAERRLFQPILQQEIVTINKED >gi|307679236|gb|GL457011.1| GENE 52 49631 - 49726 191 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLAGLFSVTGMILLGILFCLIGYQTFRKHHH >gi|307679236|gb|GL457011.1| GENE 53 49934 - 50758 1022 274 aa, chain + ## HITS:1 COG:L42411 KEGG:ns NR:ns ## COG: L42411 COG1408 # Protein_GI_number: 15673582 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Lactococcus lactis # 2 271 3 277 278 241 45.0 8e-64 MVKKIGLSIMLLFFFLIIALPIYAWKIEPNLVHVNQVTLGKKNQREPLNVVQLSDIQVSE FYETKRLDKVIKKVNREKPDIIVFTGDLFDNYAKNPQQKEPMIEKLKQLQATIGKYAVWG NHDYGGGASSVYDEVMEASGFTVMKNQGETVTLADGRRLFIGGLDDSLLGNPSVSETLSY RETYDYALLMTHEPDVADAFVGTGTQLVLAGHSHGGQIWIPLYPITNVLAEKYTRGLYQL DQETQLYVNTGLGTTAIHARFGVIPEITHFTIYI >gi|307679236|gb|GL457011.1| GENE 54 51050 - 51961 945 303 aa, chain + ## HITS:1 COG:BH2112 KEGG:ns NR:ns ## COG: BH2112 COG4209 # Protein_GI_number: 15614675 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type polysaccharide transport system, permease component # Organism: Bacillus halodurans # 4 299 39 335 337 225 41.0 6e-59 MKKLKKFYDQRQLHWMVLPGVAFMIVFNYIPIYGIIIAFKNYTIVDTVSSAPWVGLENFR IIMEDSFFWEAVRNTLAISLMKLFLGFAIPIILAVMIFEMRDGHLKKVIQTISYIPHFFS WIVLGGMLISWLSTNGFINQVMMSLGLMNQGVNHLLDPDKYWWIAVLSDLWKEVGWGTIL YLAGMSRIDPTFYEAARIDGASKLTQIRTITLPLLAPIISLNLILNVSGLLGSNLDQTLV LMNAQNQNKSEVINSFVYRMGLTQGDFSYATAVGLGISVISIVLLVITDRITRKMNNGRS VIL >gi|307679236|gb|GL457011.1| GENE 55 51976 - 52857 731 293 aa, chain + ## HITS:1 COG:BS_lplC KEGG:ns NR:ns ## COG: BS_lplC COG0395 # Protein_GI_number: 16077779 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Bacillus subtilis # 6 292 10 294 295 220 41.0 3e-57 MIKRKSKENKWFYFFNTLILVLFSLLIIVPIWNILVSSVSSSSGLAGKGLVLWPKGFTLE NYRKVFSDSSIPRAFLISVLKTVIGASTHTLFCAIVAYGLSKSRLVGRNIYTTMGVITMY FGGGMIPTYLLIKSLGLLDTFWVYIIPALFSYYDVVILMNFFREIPPSLEESAKIDGASE FQIFYKIFLPLTKPALATIILFNGVGQWNDFMTTKLYITKEYLYPLQMKIYEIIVQSNLS TMTESGSTDMVVQATTRGVQLATIVITTIPILIIYPLLQKHFIGGMMAGAVKE >gi|307679236|gb|GL457011.1| GENE 56 52875 - 54473 2072 532 aa, chain + ## HITS:1 COG:BH1913 KEGG:ns NR:ns ## COG: BH1913 COG1653 # Protein_GI_number: 15614476 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus halodurans # 90 420 76 411 551 96 25.0 1e-19 MKKVLGGLLVATAVVSLAACSGGEKKASSDVSIKDRYELDEKTPAWKLDKKKEPTKIKWY INSDWTALPFGKDVTTAQIKKDLNVDIEFISGDDSKLNAMISSGDMPDIVTLTEKTGQAA LKADSWAYSLNDLAKKYDPYLMKVVNQDTFKWYALEDGKTYGYPNYSNTKADYESGNIPV NDNFVIREDVYNALGKPDVSTPENFEKVMQQIKEKYPEMTPMGFTTVGDGAGPFLDKLQD FLGVPLEDKNGKYYDRNLDKEYLEWLKTFNDVYRAGNISDDSFTDDGATFDEKVKQGNYA TMLVAGTSGQGGNFTEFMKKSGTRYIAIDGPSSTSGRKPTLNQTGISGWLSNYITKDAKD PAKVTQLFTYLIDEPGQILTKYGVEGVTYAYNDQGKIDYLPEVKKLEQTDNDAYNKKYGI SRFLYFNNDRVNKLKVPMESALTQMQEWGKGKLVPHFVIENINPDAGTPEARANEAIETK LNTTVISMIRAKDDKAFDKSLEDYKAFLKSNKWDAIEKIKSEKMAENRDKLK >gi|307679236|gb|GL457011.1| GENE 57 54530 - 55123 338 197 aa, chain + ## HITS:1 COG:no KEGG:EF1235 NR:ns ## KEGG: EF1235 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 197 1 197 197 252 98.0 5e-66 MNKLFAYEGWYYRIFSFIANLIIINFLFLITCITGIFSGVGLIALYRTIYRLYREKDIPV LRTFWTALKNNIMRGFILTGVLFVAFLLGGIAVTSLFKIATSLGFLAIFLLSFVALFLTS FLFLFSVFNWSVKKTLGETVYVVLSNSANAIILFILPLLTFVFFYKLNLFLYIALGFGTT AFLQVAFFQKVLGVEHE >gi|307679236|gb|GL457011.1| GENE 58 55116 - 56033 719 305 aa, chain + ## HITS:1 COG:TM0077 KEGG:ns NR:ns ## COG: TM0077 COG3458 # Protein_GI_number: 15642852 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acetyl esterase (deacetylase) # Organism: Thermotoga maritima # 3 297 23 324 325 163 33.0 5e-40 MNEYFEFWQKTKEELQKIPLDIHRRVIDYPLENVQVEQVDFLSFLGERIFGYLLLPKTAG KQPIVIDCLGYMNHIQEPWQFAHWTQIGCACFVIDNRGQGGLTKDRVPYQTIWHEAPMGR GFLDKEDWYQRRLFADHLRSVEVVRTFTEINQDQIILRGGSQGGGVVLMVNSLVDFPILA TFADVPSHSCLENRVAEGTGSYQIIHQYLQEHPQAHEKIAAVLPYFDSRHFVSQIKNPVF ASVGSHDPICPMKDFFPSYHQIKARKAVRVYWKKGHGGGETTQIRREMRQIQQLLQEVKN ENSYV >gi|307679236|gb|GL457011.1| GENE 59 56014 - 56778 652 254 aa, chain + ## HITS:1 COG:lin0348 KEGG:ns NR:ns ## COG: lin0348 COG3568 # Protein_GI_number: 16799425 # Func_class: R General function prediction only # Function: Metal-dependent hydrolase # Organism: Listeria innocua # 3 247 4 252 257 167 35.0 1e-41 MKIATYNVRVDTEYDQDWQWSFRKEAVCQLINFHDWSLCCIQEVRPNQVRDLKAYTTFTC LSAEREGDGQGEGLAILYNEQKVQTIDTGYFWLSETPQQPSIHPEAGCPRITLWGLFKET TQNTPFLVINVHLDHISAHARLAGMTVILEELHDKIAQYPTLLMGDFNAESGEEVHQLVQ KKFQDSKNLATHYGPRGTFQNFTYTKPWAELEEIDYIYVKGWQVQQTASLTDSIDGRFPS DHFPLEAEVCIEER >gi|307679236|gb|GL457011.1| GENE 60 56783 - 58933 2541 716 aa, chain + ## HITS:1 COG:lin1840 KEGG:ns NR:ns ## COG: lin1840 COG1472 # Protein_GI_number: 16800907 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase-related glycosidases # Organism: Listeria innocua # 1 712 1 717 723 634 47.0 0 MKENQLIQLVEEMTIDEKINQLLQLAAAFYSDKAEEKTGPMSELGLSQETIDTAGTTLGV SGANEAKRVQKEYMQNHRLNIPTLLMADIIHGFRTIFPIPLALGSTWDEAAVEKMAEISA KEAAVSGLHVTFSPMVDLVRDPRWGRVMESTGEDPLLNSRLAAAMVRGYQGENLKEDNWR VAACVKHFAAYGGALAGRDYNTVDMSERQLREMYLPGYKAGLDAGAKLVMTSFNTVDGIP ATGNQWLFRDVLRNEFGFEGVVISDWGAIKELIPHGVAKDEKQAAELAIKAGVDIEMMTT CYPDYLKELLEEGRIAETLIDEAVMRILKLKNELGLFENPYRGADEQAEAEVILSKEHRE IAKKIAQKSMVLLKNENILPFTPQEKIALVGPGAQSQDILGAWSWQGKKEEAISLVAGAQ KLTTNLLVAQEPFDYFEPTAAAIEEALTLASQADKVVVALGETDWMSGEAASRSDIRLPE KQLAVVAQIIEKNPNVVVTVYSGRPLDLQGIDVAKGIVQAWQPGTEGGNALAEILWGQYN PSGRLSMSFPETVGQVPIFYNVDNTGRPYESAPEEKYVSKYLDVSNYAKYPFGFGLSYSH FSYQPIQLSALTFTKEQPVTVSVLVRNNSPIAGEETVQFYVRDLVGQVVRPIKELKDFQK VWLEPKEEKEVQFLLSEDMVCYVHSDNQVTSDAGEFIVMIGGNSRDVQTATVTLNE >gi|307679236|gb|GL457011.1| GENE 61 58951 - 62226 2948 1091 aa, chain + ## HITS:1 COG:lin1839 KEGG:ns NR:ns ## COG: lin1839 COG3459 # Protein_GI_number: 16800906 # Func_class: G Carbohydrate transport and metabolism # Function: Cellobiose phosphorylase # Organism: Listeria innocua # 3 1086 4 1078 1086 864 43.0 0 MQIKKLKQADTVATFLETGDLKELNSCGMMINQLEGNPLDGSMNQLYLRIITGDTINYRP MIGSNSQSDFYLSDNQLTWRGEFEAVRYQVDFRLGPSNQWFWRVNVTGTGLVDIVYGQDI GLATKGAVQSNEAYVSQYLDHHIWQEGEELVVLSRQNQPQNEKFPALIQGSFQKLVGYST DGYQFFGRSFKQTNTPEALGKRYLANEVYQYEFAYIALQTEAVQLTNESKEFVFYGAVTE THPQALAEPFLSKEALQAIYETVTFDSLEGTQDYPPKLLGEPITGNPLTEEELAALYPLQ TQIEKVGGQTYSFFTENYHHVVLQEKEIAMERAHGHILLSGKGLTVDEPLLSTTVYMYGI FNSQVVLGNTTMNKLMSNSRNALNVMKRSGQRIYILENGLWRLLTMPSAFEMGLNSATWY YKLPKDTIRVRTFTSPDSRVIQLEVTSQKDVYMWAVSNHLLLGPEEVPTYQLEQAGKTLR VTGNHSATENYYPELTYALTVDKSFQVTDSTLFGGAEADLLVLAIEKTQKFSLLITGSIE DQALVNTPLDFEKAESQYLAFINGLLHHFELTHTDSSVQQMNQLTRWYTHNMLVHYLSPH GLEQYGGAAWGTRDVSQGPTEFFFATQQPKIVASIIQHLFENQFEDDGNWPQWFMFDRYE EQKASESHGDIIVWPLKVVTDYLEQTADYSILATEIPYTSRKDNHKTKETASLFEHLKKE INYIEQHFLPETFLSCYGDGDWDDTLQPYDNRLKEQMASSWTVALTYQVLKKFAALITEI DATYSQHLTILVAGIKNDFQKYMLADETIPGFIYMETPETFEQMIHPNDQKTGIQYRLLP MTRSMLAELLTPEQVSHHLEIIEKELTFPDGVRLMNKPANYRGGVSTNFKRAEQAANFGR EIGLQYVHAHIRYTEAMAKIGQRDKTWQALMQINPVQLKEVVHNAELRQANAYFSSSDGD FKTRYESQENFGKLKDGSIGVKGGWRIYSSGPGIYLNQLITAVLGIRQKAQSVVFDSMLP EKLSGLTLTYQLFDKPVTYKFYPNQSAKIVIDGQEVPFKFEENPYREGGMEVQKDEVLSL LNEASVIEIYH >gi|307679236|gb|GL457011.1| GENE 62 62242 - 63207 981 321 aa, chain + ## HITS:1 COG:lin1838 KEGG:ns NR:ns ## COG: lin1838 COG1609 # Protein_GI_number: 16800905 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 317 1 317 321 363 59.0 1e-100 MVGIKDIAKKAGVSISTVSYALNGSSKVTEETRTRIQAIAEELNYVPNMAARTLKRRQTN IIGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSGKKSHLFIPEKMVDGAIILDWTFP TKEIEKFAERGHSIVVLDRTTEHRNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEK GYDSQERLAVSTRELTRFGIPYEIIQGDFTEPSGYAAAKKILSQPQTEPVDVFAFNDEMA IGVYKYVAETNYQMGKDIRIIGFDNSELGAFVQPRLATIAYSKHRWGMVAAEKIIHLMRG ELAESEHIYTRFIEGESFPSE >gi|307679236|gb|GL457011.1| GENE 63 63240 - 63770 601 176 aa, chain - ## HITS:1 COG:no KEGG:EF1241 NR:ns ## KEGG: EF1241 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 12 176 12 176 176 317 100.0 1e-85 MSLLVLSTLLSACSTVSGSPASQSAPAPDEVLATSIGTYENRTLLVPDGRLALTALHKGK DYQGKPMFYVLFELTNTTEKTQNIQLMIQSFMEVSQTVHGKAQNLQYAVLTDSPFQDKLD RLADEINPGETIQGAYPYEFINENKPVHFKFRDRLLSLDEPIASEEITITEKSLVR >gi|307679236|gb|GL457011.1| GENE 64 64041 - 64754 913 237 aa, chain - ## HITS:1 COG:lin0390 KEGG:ns NR:ns ## COG: lin0390 COG2188 # Protein_GI_number: 16799467 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 234 1 235 237 167 39.0 2e-41 MRTNTRYKEIYAAIKQDIEAGVYPINQKLPQGRLLAEKYQVSELTITKALHLLVQEGYVV RRRGSGSFVQDFQNRTITKFSPLTGTYSTYDGKVESVVLGFATEVPEPWVTEKLSITEEE LVYKIIRLRIIEDVPSIIEYTWMPVALIPNLTMKELKVSIYQYISEQLHQKIQSARVSIS GIRPSPLEKKYLNLTDNDFLMRAEQIAYLGNGHIFEYSIANHIPSEFTFETVLIAEK >gi|307679236|gb|GL457011.1| GENE 65 64997 - 66430 1740 477 aa, chain + ## HITS:1 COG:L179659 KEGG:ns NR:ns ## COG: L179659 COG2723 # Protein_GI_number: 15672157 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Lactococcus lactis # 1 475 1 475 478 739 73.0 0 MEHHQLKAFPQDFLWGSASAAYQVEGAWNEDGKGASVWDEFVRLPGKTFKETTGDLAVDH YHRFKEDVALMKQQGLKAYRFSIAWTRILPEGRGQVNQAGLKFYSDLIDELLAAGIEPMV TLYHWDLPAVLQKEYGGWESRKIIADFVAYAKILFDAFRGKVRYWISLNEQNVFTSLGYQ LAVHPPGVTDNKRMYEANHIANLANAAVINAFHELEMPGKIGPSFAYTPVYSVDAHPANV LAAENAEDLLSHFWLDVYLWGEYPVAALNYLQEQGVAPTIKEGDLALLRSAKPDFLGINY YRTDTVAANPLDGVGIGKMNTTGEKGSETESGVPGLFKKVNNPYVERTNWDWAIDPQGLR IALRRLASRYQVPILITENGLGEYDTLTEDKQIHDTYRIDYLRSHIQAIQEAITDGVSVI GYCTWSYTDLLSWLNGYQKRYGFVYVDQDETQKGSLERIPKDSYYWYQKVIETNGLI >gi|307679236|gb|GL457011.1| GENE 66 66455 - 67504 1252 349 aa, chain + ## HITS:1 COG:ECs4289 KEGG:ns NR:ns ## COG: ECs4289 COG0673 # Protein_GI_number: 15833543 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Escherichia coli O157:H7 # 1 348 1 345 345 352 51.0 6e-97 MTVKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFTTDLNEL LTDPEIELITICTPAHTHYDLAKQAILAGKSVIVEKPFCDTLEHAEELFALGQEKGVVVM PYQNRRFDGDYLAMKQVVEQGFLGEINEVETHIDYYRPGSITEQGPKENGSFYGLGIHLM DRMIALFGRPDQVTYDIRNNEVSEAVDNYFDVDLHYGSKLKVKVKTNHSVASPYPRFIVH GSNGSFIKYGEDQQENDLKAGIMPDAPGFGEDSPMYYGEVTYRNGNGDWIKKQIKTPVGD YGRYYDAVYETLKNGAPQLVTKEQALTNIEILEAGFLNSSPSVYRLKEN >gi|307679236|gb|GL457011.1| GENE 67 67978 - 68436 509 152 aa, chain + ## HITS:1 COG:lin1603 KEGG:ns NR:ns ## COG: lin1603 COG2707 # Protein_GI_number: 16800671 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 2 142 4 144 153 114 56.0 1e-25 MESWLFLLLIALIAFVAKNQSLLIASVVVLALKALPNSAKIMSWLSDKGINLGVTIISIT ILVPIATGQIGLKDLIQSFKTPMGWLGIFCGILVAVLSSKGVGLINQSPEITVALVFGTI LGVVFLKGIAAGPIIASGMMYVIITTFQAFQH >gi|307679236|gb|GL457011.1| GENE 68 68475 - 68816 409 113 aa, chain - ## HITS:1 COG:no KEGG:EF1247 NR:ns ## KEGG: EF1247 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 113 1 113 113 221 100.0 6e-57 MSLTISEEVKQRLAPFLTETNTFLLVANDGSNPYSSAEGCCMIGDRFIIVPVDQAEAPYT ETIANDSFHVYTSTYDQMFLTGHLQLVIHPNAGTITLKNESGILDSNVDIYQH >gi|307679236|gb|GL457011.1| GENE 69 68890 - 69153 423 87 aa, chain - ## HITS:1 COG:no KEGG:EF1248 NR:ns ## KEGG: EF1248 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 87 1 87 87 111 100.0 1e-23 MVFLHIIFGMFAFIGALGLGVAFRDSFTELSTPKKAAIILSYVGAIGSTVLGFTSATKNP FVLAATVVLVVAFSIALFKKSSKETSK >gi|307679236|gb|GL457011.1| GENE 70 69309 - 71021 1806 570 aa, chain - ## HITS:1 COG:SP0966 KEGG:ns NR:ns ## COG: SP0966 COG1293 # Protein_GI_number: 15900843 # Func_class: K Transcription # Function: Predicted RNA-binding protein homologous to eukaryotic snRNP # Organism: Streptococcus pneumoniae TIGR4 # 1 565 1 551 551 509 50.0 1e-144 MSFDGVFTHSMVHELTETLVSGRISKIHQPYENEVVLVIRAKGKNHKLLLSAHPSYARIQ LSTITYSNPETPPNFVMMLRKFLDGAILETIQQIENDRVIHFTFSKRDELGDLQNIVLIV ELMGRHSTIVLVNQSSGKILDAIKHIGMSQNSYRSLLPGATYIEPPKPLGLNPLTASKEE VFALLSTAPELNGRYLQQHFQGLGKDTADELSARLLAQPNEKMAIWTEFWSSVTEAVVPT LTVTEKKEYFTPIPYQSLVGEQTTYPTLSELLDAFYSGKAEKDRVKQQGGELIRKIENEL KRNQKKLKKLQQTLADTENAENYRRDGELLTTFMAQVPKGATEVELPNYYEENAPLRISL NPALSPNQNAQKYFQKYQKLKNAVRVVKTQIQQTQQEISYLESVVAQLEIATPMDIEVIR EELIEQGYLKRKKNKKQKQPKKSQPDLFYATDSTPILVGKNNLQNDQLTLRTAKKTDYWL HAKDIPGSHVIIRDAHPSEETLTEAALLAAYFSKYRLSSQVPVDYVKVKHVHKPNGAKPG YVIYENQRTLYVTPTEKSIKKIQQNKDSAS >gi|307679236|gb|GL457011.1| GENE 71 71241 - 71900 704 219 aa, chain + ## HITS:1 COG:no KEGG:EF1250 NR:ns ## KEGG: EF1250 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 219 5 223 223 321 100.0 1e-86 MEELKEALYELRQRKLLMITAIVALVLIIGSIIFIPTMQKNIRAAQVESLVAGPIKSEKV SVLDYKTADKKIQETGAMSVMFAKPSGKQYDQMVKLFNSDKMNEFHRSLYIYPLIYNAGK AQEQYNVSGDEITLVFFENGKEKTRTVVEKSMDLKTQLIPELNRLPMAGVLKDQQKAAQE AEKEAAKTAETQTTTSTTGVAQSTETTTESTDTVPETGE >gi|307679236|gb|GL457011.1| GENE 72 71964 - 72071 177 35 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MALVISMTILVSLWLIQSQKQAVKVPVKIERNRNN >gi|307679236|gb|GL457011.1| GENE 73 72761 - 73750 1202 329 aa, chain + ## HITS:1 COG:SP1069 KEGG:ns NR:ns ## COG: SP1069 COG2984 # Protein_GI_number: 15900938 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 1 325 11 339 344 296 52.0 5e-80 MKNKRLTFVVSLLAIYLIGAFFVNQKVTNSKKETVTVGVLQFVSHPALDEIYKGVEEGLK ENGYDKGKNLEIIFQNGQADQSKLAIMSQQLVQKKADVLIGIATPAAQALANTTQEIPII LGAITDPVSAGLVKDNQKPGGNITGVSDQSPLSAQMDLLKELIPAAKKIGILYASSEENS RYQVAEAQKAAEAKGLTVKTYAVPSSNEIAQTVQVMTKETDVIYIPTDNTIANAMQTVVG EANRTKTPIIPSVDTMVEQGGLATVGINQHALGVQAGKMAAEVLSGKSQPATTPIYTFNT GDTIINEKQAQKLGITIPAELAKKSKLIN >gi|307679236|gb|GL457011.1| GENE 74 73775 - 74662 1117 295 aa, chain + ## HITS:1 COG:SP1070 KEGG:ns NR:ns ## COG: SP1070 COG4120 # Protein_GI_number: 15900939 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 283 1 280 288 294 62.0 1e-79 MIVSAIGQGMLWALLGLGIFMTYRILNFPDMTTEGSFPLGGAVCVTAITTGVSPFVATLL GVGAGMLAGLVTGLLFTKGKIPIILAGILVMSGLNSVILFVMKSPNKSLLNQPKIQDVFQ KMALPDYYDTIFLGISVLAVVMILLLFFFNTSLGQAYIATGDNEEMARSIGIQTDRMKIL GLVLSNGLIGLSGALIAQNDGYADVSKGTGVIVIGLASLIIGEVLFGELTFGERLMAIVV GSIIYQLLILLVIKLGFDTTYLKIFSAVILAICLMIPQLKKALRLHGFSDKGETK >gi|307679236|gb|GL457011.1| GENE 75 74659 - 75426 209 255 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 25 238 38 248 329 85 29 2e-15 MKPVVELKNATKIIDNGMNEKKVILDHVNLAIYPGDFITVLGGNGAGKSTLFNSLAGTLT LTEGQFLIEGVNRTNLSEVKRAKSLARVFQDPKMGTAPRMTVAENLLLAMKRGQKRPLTL RKINEQRALFTKICQEVGNGLENHLDTPTGNLSGGQRQALSLLMATITKPELLLLDEHTA ALDPKTSKQLMHLTEQRIEEGNLTCLMITHRMEDALRYGNRLIVLQKGKIVQDLNAAEKA QLTLQDLLLFFEEVE >gi|307679236|gb|GL457011.1| GENE 76 75458 - 75919 439 153 aa, chain - ## HITS:1 COG:lin0586 KEGG:ns NR:ns ## COG: lin0586 COG3610 # Protein_GI_number: 16799661 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 3 142 7 145 152 121 45.0 4e-28 MELIFHLLFSFLATVTFGIITNIPRKALVACGITGMTGWMIYYLLTQTFDASQTFANFLG TVGLGIASIFFSRYKKMPMIIFYIPSLVPLVPGGPAYQAVRSILLGNIDDGLQLILKVVF TAAAIAAGFMVTSLLERIVKRFFPKRLFRLVKK >gi|307679236|gb|GL457011.1| GENE 77 75931 - 76707 619 258 aa, chain - ## HITS:1 COG:lin0587 KEGG:ns NR:ns ## COG: lin0587 COG2966 # Protein_GI_number: 16799662 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 10 258 2 250 250 234 48.0 1e-61 MKGAIPLVNSEKRKQLIIDTCILAGKIMLESGSEVYRTEDTITRIATNAGEPESVCYTTA TGIFVGFRSSNYTQLENIPQRSINLEKVSLVNQLSREFAQKEITLPELYQRLTLLETDTP TFSISLRLLAAGIVSCTLMYIFGGTWQDFIATFFVGVIGYASYLFTQKLFQVPYLDSFAA AFVIGLLAYLAVHFHLAVNIDNIIIGAVMPLVPGVAITNSFRDILAGHLISGTARGTEAI FIAGSVGLGIALIFKLFM >gi|307679236|gb|GL457011.1| GENE 78 76939 - 77145 193 68 aa, chain + ## HITS:1 COG:no KEGG:EF1258 NR:ns ## KEGG: EF1258 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 68 1 68 68 110 98.0 2e-23 MDNQWLLYGISSVVLIILIRRTILSGNIVLSCLLGAILLIQVVGVALCAQQKKKNEHSKE LPSSKVHQ >gi|307679236|gb|GL457011.1| GENE 79 77163 - 77942 1012 259 aa, chain - ## HITS:1 COG:lin2311 KEGG:ns NR:ns ## COG: lin2311 COG0561 # Protein_GI_number: 16801375 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 3 259 2 256 256 238 46.0 9e-63 MDKMKAITFFDLDGTLLDGTSQITPEITAAVAALKDNQILPLIATGRTLCEIQPIMKASG IDSAIVMNGQFIHYEGKTIYSDEFTTEECVLLHEHVKQRGHELAFYNERRIFCTGHTGTV KQAYDYIHSAVPEIDPTGYENDAVNMMLVLSQHGDDDEYYYERFPELTFYRNGPFSIDIV RKGVSKGSGVKNLFNTLGLNGIPTYAFGDGINDLALFEACDYGIAMGNAREELKEKATFI STKNTENGIVNGLKKFDLL >gi|307679236|gb|GL457011.1| GENE 80 78157 - 78876 881 239 aa, chain + ## HITS:1 COG:BS_yclJ KEGG:ns NR:ns ## COG: BS_yclJ COG0745 # Protein_GI_number: 16077443 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus subtilis # 1 235 1 226 227 267 60.0 1e-71 MNILMIEDNESVSEMMQMFFLNEGWEATFKDDGKEGLATFLASPEKWDMITLDLNLPSMD GMAVCREIRKVSANVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALHRR AEVAEAAHDTSENTDETFDVITDHFKMNTKTRETYLDNQLIEGLTPKEFDLLYTLAKKPR QVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEKVGPQVIQTVWGVGYKFDDSGVA >gi|307679236|gb|GL457011.1| GENE 81 78876 - 80345 1617 489 aa, chain + ## HITS:1 COG:BS_yclK KEGG:ns NR:ns ## COG: BS_yclK COG0642 # Protein_GI_number: 16077444 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 1 482 4 467 473 327 40.0 4e-89 MKYLYQQLLAFIGVIALIILIVGTSFTQLTKRTMQENNYEQLYGYAESALETRDFFINVA GVSDRDVLSYSFQLTERVLQKQDVQFVFINKDREVQYPPVDSTKKLDFSLIDKNWDQIMK GNRVYATENIDIYGARNTSSYVMLPVYASNQSSDKKVIIGSLVITQPAKNVDRSVQSVTQ NLIKGFIFSGVIALLLSYLFATFQVKRINRMRKATKEITSGNFDIQLPVHDKDEFDDLAE DFNKMAASLKESQEEINRQEERRRQFMADASHEMRTPLTTINGLLEGLQYNAIPENQKEN AIKLMQNETARLIRLVNENLDYEKIRTNQIQIVVKKFNGTEALENIVTQLTAKAEAAGNQ LYLDTTEPIDVYADYDRFVQVVVNIVQNAIQFTENGEIHIALEKGYLETIVRISDTGIGM TEEQILNIWDRYYKVDPSRKNTKYGESGLGLPIVQQLVRLHKGKINVESEPGKGTTFIIS FPDVEITEN >gi|307679236|gb|GL457011.1| GENE 82 80383 - 80934 582 183 aa, chain - ## HITS:1 COG:no KEGG:EF1262 NR:ns ## KEGG: EF1262 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 183 1 183 183 308 99.0 7e-83 MNVTPSFKKTTEKKSSFDALALREVYGIIYSAPEQELALADFFQTNQLTITRLSSSETFL PYLPLEENLFIASTIKERDRKVVLAEAFQVFQLEPALLGRSFTSFTTFEKIKMRIIQLLL SKTSTLVIDDIFSSLTIGQRQEILPQLKIAVQKRNKRLLFLTKDPQIIDSPYVHPLSLHA LLN >gi|307679236|gb|GL457011.1| GENE 83 80949 - 81650 446 233 aa, chain - ## HITS:1 COG:no KEGG:EF1263 NR:ns ## KEGG: EF1263 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 233 1 233 233 364 100.0 1e-99 MRSVRYATASSFYHKKITLITALFFFLFSFLLTGLFNLIDFEKEFLRTMPDFVDIEKQTS YHYQLIQYYWHLYLGSVIFFGVTFLLLMYVTLRIKKEEIHTWYHMHFSNMYVTKQLLLEL CLPALLGIFSFLLFTLMFQETYNTVLWAARDAILQWSHLETPAFLAKSTDQDVTITNIQH LGIQTIQAFSFDFKSMQSLYTIRNCFVNCLILLGIPLVCGTPFTLIYLRTHKK >gi|307679236|gb|GL457011.1| GENE 84 81756 - 83864 1989 702 aa, chain - ## HITS:1 COG:SPy0807 KEGG:ns NR:ns ## COG: SPy0807 COG1368 # Protein_GI_number: 15674849 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Streptococcus pyogenes M1 GAS # 3 694 18 712 736 733 55.0 0 MKKLFKTNILNTRLGLFSLIAILLWLKNLFAYAVDFHLRLENINEYFILLINPIATTVFL LAIALYVRRKKASYITMMIIYFLMSLLLFSNVVYYREFTDFITVNTMLGAGKVASGLGES ALRLFRPYDVIYFLDFIIIGVLLLTNKIKTDARPVRARVAVSVTLLSVVFFLFNLFMAET ERPQLLGRQFSRDYIVKFLGLNAFTVYDGITTYQTNQVRAEASANDMKQVEDYVKQQYAA PDDSKFGIAKGKNVIYIHLESFQQFLVNYKLKDENGVEHEVTPFINSLYNSKSTFSFDNF FHQVGQGKTSDAETLLENSLFGLDQGSLFTQVGGKNTFEAAPDILKQTQGYTSAAFHGNA GNFWNRNETYKRLGYDYFFDASYYDVNSDNSFQYGLHDKPFFNQSVQYLEHLQQPFYSKF IAVSNHYPYSQFTNDEAGFPIAKTSDETINGYFATANYLDKAVEEFFNYLKSSGLYENSV IVLYGDHYGVSNSRNQNLAELVGKTKADWNDFDNANMQRVPYMIHVPGQENGGVNHTYGG QVDALPTLLHLLGVDTKNYIQLGQDLFSKQHNQIVAFRNGNVVTPKYTILGSSIYDTKTG TLITEPTEEVKKEVADLKAKATKQLETSDQITNGDLLRFYTNSGLKPVNPEDYDYKNQLQ QLEAIEKEKGEKSTSVYSKNNNKSTVDEYHTDSYQGYQKTGK >gi|307679236|gb|GL457011.1| GENE 85 84122 - 85294 329 390 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|223476703|ref|YP_002580685.1| ribosomal protein L11 methyltransferase, putative [Thermococcus barophilus MP] # 2 389 3 393 396 131 25 3e-29 MKLQVTKKAEHKFKKGYPLIQKEDLQQVPAPLPTDWLTLIDSKGQRLAEGYLGEQNKGIG WLLSWHGPINQSFFQQLFEISRKKRTSFEKDSLTTAYRLFNGEGDGIGGLIIDRYADYAV FSWYNETLYQKKAELLTAFRTVYPDIIGAYEKIRFSTKNLPESQFLYGEQAPEPLLVTEN GVQFATYLNEGLMTGIFLDQKEVRGRLVDGFAVGKTVLNMFSYTGAFSVAAAMGGAVATT SVDLAKRSLPKTTEQFEVNHLNLAPQKIIVMDVFDYFKYASRKGLSYDMIILDPPSFARN KKKVFSVAKNYGELVKDSIDILTDKGTLIASTNAANLSLAKYKKMVITALQEKNVRYKIT DTYQLPADFQVNPNFPEGNYLKVLFIEIEK >gi|307679236|gb|GL457011.1| GENE 86 85361 - 86278 1011 305 aa, chain - ## HITS:1 COG:lin1191 KEGG:ns NR:ns ## COG: lin1191 COG1039 # Protein_GI_number: 16800260 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HIII # Organism: Listeria innocua # 4 304 3 305 308 257 47.0 2e-68 MAQNHVIKVSKKTLAEMTTVYQPNRLNKTVPYTVFVAKVGTTTITAYQSGKVMFQGPQAE KEAARWEGTSTTPKKKISAQTTTLPADFGNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMI SKLKSLGVRDSKELTDPQIIQLSHVIKELIPYKLLIVEPKKYNEIQPNYNAVHMKVALHN QAIYLLLQELAPTKPEGILIDQFTPENNYRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAA SIISRAAFLEELDKESAELGFSVPSGAGSKSDQVAARILKKGGLDLLANYAKLHFANTQK AQKLL >gi|307679236|gb|GL457011.1| GENE 87 86503 - 88917 2107 804 aa, chain + ## HITS:1 COG:L168650 KEGG:ns NR:ns ## COG: L168650 COG0474 # Protein_GI_number: 15672557 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 28 794 4 772 775 714 50.0 0 MRRKKEMQENEPIAVTANAERYYPEDKQGLTAAQVEERQRKGLVNAAVDTEFITTKQIVI NNVFTYFNLIFVVLGVLLMLVQSYKNMTFLPVVIINTVIGIYQEIKSKKVLDSLNILNAT KVTVVRDGQEQEISPDELVLDDVVLFKSGEQISGDAIVLSGEVRVNESLLTGESDEITKV AYSQLLSGSFIVSGSCYARIDKIGAEAYVHQLTLEAKSIKKGEQSEMVGSINRLVKWVGI IIIPIGCVLFFQSYFINHQGLHDSIVSMEAALIGMIPEGLYLLTTVALAASTMRLAKRGV LLHNMKSIESLARVDVLCVDKTGTITENTMEVQELVPVVSIENDGTDLTNVEKLIGDFCR TMSADNDTMKAMKEFFVTNNQREAVSYTSFSSVEKFSSVTFPEATYILGAPEMILRDNYE MYQSEVEHYTSQGYRLLVFGKYLGEFQETLAAEVQPLGYILLWNPIRKEAKATFEYFAEQ NVAIKVISGDNPLTVSNVAQAAGIIGAENYVDARTLTTMEAQTEALEKYTVFGRVTPEQK KQFVLLLKKLDHTVAMTGDGVNDILAMKEADCSIAMASGNQATAQASQVVLLDSDFSTMP EVVFEGRQVVNNIERSSSLFLVKNIFSLLMSVFAMIFAVTYPLQPTQVTLISLFTIGIPS TFLALEPNHRRIEGKFLFNVLSKAIPGGLTDMLVVGALLICGDILALQKTDISTTATLLL VSVGFMVLYKISSPMNRYRKRVMIGCLIGMVITSISMKNLFSLTSVSPTTLLLLAILFFA ADSTFQHLSTISEKVQLWFYKKRH >gi|307679236|gb|GL457011.1| GENE 88 89059 - 90945 1670 628 aa, chain + ## HITS:1 COG:lin0203 KEGG:ns NR:ns ## COG: lin0203 COG4932 # Protein_GI_number: 16799280 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Listeria innocua # 58 603 43 562 586 131 27.0 3e-30 MKKRSFVYWGMFFILLSTLITPFLKLETGYAQTEPTSTSETNQISATPNVVPRKQVGNIV TAIQLTDKEGNPLGTINQYTDIYLRIEFNLPDNTVNSGDTSVITLPEELRLEKNMTFNVV DDTGAVVAIAQTDVANKTVTLTYTDYVENHANISGSLYFTSLIDFENVENESKIPIYVTV EGEKIFAGDLDYQGEGDDVNEKFSKYSWFIEDDPTEIYNVLRINPTGQTYTDLEVEDVLK TESLSYMKDTMKIERGQWTLDGNAIWQFTPEEDITDQLAVQYGPGDRNFSVHFGNIGTNE YRITYKTKIDHLPEKGETFTNYAKLTENQTVVEEVEVSRVSQTGGGEANGEQYVVEIHKE DEAGQRLAGAEFKLIRNSTNQTVAKITTDQNGTAIVKGLLKDNYTLVETKAPTGYQLSQN KISITPEDFGKNLVALKTVVNHKISYQPVAASFLAGKVLLGKPLKDAEFQFELLDEKGTL LETVSNDTLGKIQFSPLTFETPGNYQYTIREVNTQQAGVSYDTHNLQVQVTVEALLGNLV ATTQYDGGQVFTNHYTPEEPIESTTPPTSGTTDTTTNSTTETTSITIEKQAVHNKELPKT GETKENAFLFLGSLLLIQGLFIYFKTKK >gi|307679236|gb|GL457011.1| GENE 89 91151 - 91624 627 157 aa, chain + ## HITS:1 COG:lin1358 KEGG:ns NR:ns ## COG: lin1358 COG0779 # Protein_GI_number: 16800426 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 157 1 155 155 172 57.0 2e-43 MSSAVETVTKLVTPILEEQNFELVEVEFVKEGKNWFLRVFIDKEGGIDIEECAFVSEKLS EKLDAMDPDPIPQAYFLEVSSPGAERPLKKESDYEQAVGKYIHISLYQAVDGEKQIEGTL VHLDSEQLTLSVKIKTRVKEMTFERKNIAKARLAIQF >gi|307679236|gb|GL457011.1| GENE 90 91768 - 92967 787 399 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis 16M] # 4 372 9 372 537 307 44 2e-82 MSKEMLNALDVLEAEKGIPKDTVIEALQAALVSAYKRHYGQASNVEVEFEPKKGNIHVYA VKEVTEEVFDSQLEVSLKDAVALNGAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVRE AERTIIYNEFSEYENDIMQGIVERQDRRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKV YVSRVENTSKGPQVFVSRSHPDLLKRLFEQEIPEVYDGIVEIVSVAREAGDRSKVAVRST DPNIDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIYISNALNPAQVLDVIFDPE NSKACTVVVPDYQLSLAIGKRGQNARLAAKLTGHKIDIKSESDMAEFYEQQANQEVAEVA EEMDEAIIHSDMTADDYENLAAEEAVVEAEITEELPEQE >gi|307679236|gb|GL457011.1| GENE 91 92988 - 93287 525 99 aa, chain + ## HITS:1 COG:L175136 KEGG:ns NR:ns ## COG: L175136 COG2740 # Protein_GI_number: 15672747 # Func_class: K Transcription # Function: Predicted nucleic-acid-binding protein implicated in transcription termination # Organism: Lactococcus lactis # 1 94 1 94 108 96 53.0 1e-20 MKKRKIPMRKSVVSGEMKPKKELVRITRSKEGEVALDPTGKLPGRGAYVDLDPAEVQKAW DKKILDRVLETKLSDEFYQELLDYVTHQKARKELFGDGK >gi|307679236|gb|GL457011.1| GENE 92 93277 - 93582 495 101 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375842|ref|NP_814996.1| ribosomal protein L7A family protein [Enterococcus faecalis V583] # 1 101 1 101 101 195 100 2e-48 MENKTKILNLLGLAMRAGKLVTGEELTLKDIRANKAKFVFVAQDASENTRKKIKDKSSYY NVPVSELFSQFELSQAIGRPRMVIGVTDAGFATKIKELLKG >gi|307679236|gb|GL457011.1| GENE 93 93595 - 95991 3024 798 aa, chain + ## HITS:1 COG:lin1362 KEGG:ns NR:ns ## COG: lin1362 COG0532 # Protein_GI_number: 16800430 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 2 (IF-2; GTPase) # Organism: Listeria innocua # 1 798 1 781 782 844 60.0 0 MGKKRIYELAKEMNKASKDVVDKAHQLGMDVKNHMGAISSEQETKLRQAFGGGSTVNTQS KATNNQKQQTTQNKPANKKPMNNKPGEQRNNQNRPNNQSTNGQQRNNNNQNRHGQSNTQN RSNQTNTNNQNRNTQNNNGSTTNQNRTSQNNNGGNNQNRGGQNRNNNFGGGQNRNNRNNF NNQNRNRFNKKGKKGKHQQESAKPAVPARKFRELPDVLEYTEGMNVADIAKKIHREPAEI IKKLFMMGVMVNQNQALDKDTIELLAVDYGMEPQEKVQVDIADIDKFFEPEAVVEENLTT RPPVVTIMGHVDHGKTTLLDTLRHSRVTSGEAGGITQHIGAYQLDIDGKPITFLDTPGHA AFTSMRARGASITDITILVVAADDGVMPQTIEAINHAKAAKVPIIVAVNKIDKPGANPDH VKQELSEHELIPEEWGGDTIFVNISAKFNQNIDELLENILLIAEVEDLKADPTQKAIGTV IEARLDKGKGPVATLLVQQGTLHVGDPIVVGNTYGRVRVMTNDMGRRDKEAGPATPVEIT GLNDVPQAGDRFVVFEDEKTARQAGEERAKRALLEQRSASSRVTLDNLFESLKEGELKEV NIIVKADVQGSAEAVSASLQKIDVEGVRVKIVHAAVGAINESDVTLAAASNAIIIGFNVR PTPQAKQQAEQEEVDIRLHRIIYKALEEIETAMKGLLDPEFEEKITGQMTVRELYKVSKV GTIAGCYVTEGFIRRDSGVRVIRDGIVIYEGKLASLKRFKDDVKEVKLGFECGAMIENFN DLRVDDAIEGFIMEEIKQ >gi|307679236|gb|GL457011.1| GENE 94 96016 - 96366 635 116 aa, chain + ## HITS:1 COG:SPy1719 KEGG:ns NR:ns ## COG: SPy1719 COG0858 # Protein_GI_number: 15675570 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-binding factor A # Organism: Streptococcus pyogenes M1 GAS # 1 113 3 115 118 135 61.0 2e-32 MANYRDRRVGQEIMREVNDILNKRIRDPRVQGITITDVRVTGDLQQATIYYSLLSDLASE QQKAQQGLDKAKGLIRKELGQRLTLYKTPELIFERDESVQYGNHIDELIRKLNQGE >gi|307679236|gb|GL457011.1| GENE 95 96449 - 96679 73 76 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315153236|gb|EFT97252.1| ## NR: gi|315153236|gb|EFT97252.1| hypothetical protein HMPREF9502_01271 [Enterococcus faecalis TX0031] hypothetical protein HMPREF9508_01975 [Enterococcus faecalis TX0312] # 1 76 1 76 76 119 97.0 1e-25 MKRIVAYYKNGDRYLKEMGSGKSSLHFFLFFFVLHSMREHIIQFIGFWPSFIFVLILVPN LMLGVGHINHWYKNRS >gi|307679236|gb|GL457011.1| GENE 96 96739 - 97212 523 157 aa, chain - ## HITS:1 COG:no KEGG:EF1276 NR:ns ## KEGG: EF1276 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 157 1 157 157 283 100.0 2e-75 MNDYEKLVSSIQKDVTVLEIDLYNQTGCYGLYRNGKIYIEKTLSTRQKKNILAEEYGHYQ TSVGTILNQNCTENRKQELKARNVALEQLVTLDDLIRCSEAGLSNHYSCAEFLEIDVETL KNVITYYRQKYGATYLYKGRIFEFRDYSVMVLNTGLT >gi|307679236|gb|GL457011.1| GENE 97 97259 - 97741 556 160 aa, chain - ## HITS:1 COG:FN2065 KEGG:ns NR:ns ## COG: FN2065 COG1396 # Protein_GI_number: 19705355 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Fusobacterium nucleatum # 4 78 7 79 155 59 45.0 3e-09 MNIFAVRLKEALTAKNIKPSDLAKKTGIGKSSISDWLAGRYEAKQDKVYRIADALDINEA WLMGQEVPMEKNASTIDRIYKKLEPQRQAIVYQFAEQQLHEQQTQAEILSFPRRDEMTLA AHAGDPEKIFSKEEIEKIHDYLDEIDAKYQQSISSDKKED >gi|307679236|gb|GL457011.1| GENE 98 97959 - 98093 200 44 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSQNYKKTLSDMLLLAIILLISSVSIKIGAIVIGMIGLMELLTE >gi|307679236|gb|GL457011.1| GENE 99 98124 - 98894 714 256 aa, chain + ## HITS:1 COG:no KEGG:EF1279 NR:ns ## KEGG: EF1279 # Name: not_defined # Def: DNA replication protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 256 1 256 256 489 97.0 1e-137 MAERRMFAKTIIDSDAFLDMPLSSQALYFHLAMRADDDGFINNPKKLQRMVSCGEDDLKL LMVKKFILVFESGVIVIKHWKIHNYIRSDRYKPTLYQEEKNQIVEKNSKAYRFKGESSVS GQPADYQRLPQESIVQSKLGQSQGSSSENDCLKMIYHFYEENGFGTLASKTSQDFKYWLQ DFIQKGSSQEEACQLILHALGIAVDRNKRNYGYVNAILKSWEQQNYLSVHEVLVNDKKQV SEHAPQMTEEYQELGF >gi|307679236|gb|GL457011.1| GENE 100 98913 - 99755 843 280 aa, chain + ## HITS:1 COG:L0312 KEGG:ns NR:ns ## COG: L0312 COG1484 # Protein_GI_number: 15673401 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Lactococcus lactis # 48 275 62 291 294 102 29.0 6e-22 MHATDQTFQILLSQLLEKVEDRCPECGSEQYVWQQKNKDGTERCAPTCWSCGYKMLKKHE QEATQQRSQESFMARTQKFFHQGSLIADDALRQCRLTNYQTTELETRQAKERALAAVSAI VEGKPIHVIFSGKPGVGKSHLAISILVEVLERSAYQKYCLFVSYSELLEKLKMSMNESAK SQAKAQAYITRMKKADVLVLDDLGAELGIKNKVSTDFNNDILNRILEARQNKATIFTTNF SGKQLVEAYGTRIISRLMKHASGYVFQYKDTTDKRMRSVK >gi|307679236|gb|GL457011.1| GENE 101 99758 - 99850 210 30 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLTIIIGFIFWTMTLMLGYLIGEREGRKHE >gi|307679236|gb|GL457011.1| GENE 102 99843 - 100214 358 123 aa, chain + ## HITS:1 COG:no KEGG:EF1282 NR:ns ## KEGG: EF1282 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 123 1 123 123 213 100.0 3e-54 MSNLTKRKKDLFEMKSVVFKDISKQQSEKAQKRKRLLQLMNQYPDWASQKNKLIMQEIQE LGQAIGNWSMDQSRPIQSIKAASFTKSEYLYLIWLGYSDEAIRHGLDMSKECYFIYRLTL LNE >gi|307679236|gb|GL457011.1| GENE 103 100234 - 100641 568 135 aa, chain + ## HITS:1 COG:no KEGG:EF1283 NR:ns ## KEGG: EF1283 # Name: not_defined # Def: RinA family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 135 1 135 135 250 99.0 1e-65 MRTSTFNYIKDILADFYKTDEYIRQREEELRHPYQEADLNAGIRGQGLHSVVTERMAITI AMDRRLWNLERNRDIIKNCLAEADEQTRVIIEELYMKKRPSLTLIGLAQQLFISKSQAYK LRNHFFEAVADELGM >gi|307679236|gb|GL457011.1| GENE 104 100887 - 101279 449 130 aa, chain + ## HITS:1 COG:no KEGG:EF1284 NR:ns ## KEGG: EF1284 # Name: not_defined # Def: structural protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 130 1 130 130 249 100.0 3e-65 MNEAEQELYEALVAICQTSGFLLLEELPTDLPDQPFVYLGDSKELPKPTKSAILGEIELI MHVYGALSERQQISTIKGTILRQATSNLKRTAHFNWGIKHQEVKAQMVKDTKQMKKTIWH AVLPLHMQFY >gi|307679236|gb|GL457011.1| GENE 105 101292 - 101561 557 89 aa, chain + ## HITS:1 COG:no KEGG:EF1285 NR:ns ## KEGG: EF1285 # Name: not_defined # Def: major tail protein # Organism: E.faecalis # Pathway: not_defined # 1 89 1 89 170 166 100.0 2e-40 MGEVMQGKDRILLVRRLDEAATKKAMKPLFQIEHEWEFSRESSGTQTKDGVANAVSGLEV TLSLSGLASRDDENLYMKDAVEDGILMEF >gi|307679236|gb|GL457011.1| GENE 106 101837 - 102196 489 119 aa, chain + ## HITS:1 COG:no KEGG:EF1286 NR:ns ## KEGG: EF1286 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 119 1 119 119 207 100.0 9e-53 MNLEINGKTIEVKFTIGAIRELDKRYQIENGAAKFGMGISSAMIYLRQYNPVILVDIMEA LQSGQLKIGKSEIEAWLMTQDVKKLSDDLLKEMGKQPLTKPMIDQFSKEAKKAEAQATN >gi|307679236|gb|GL457011.1| GENE 107 102289 - 102570 285 93 aa, chain + ## HITS:1 COG:no KEGG:EF1287 NR:ns ## KEGG: EF1287 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 83 26 108 122 134 100.0 1e-30 MSEFELRMIAFNLAEVDEERKRHELAYLNVKAQATNKKGKPVFESFKSFYDYEKRVAEVL AANQPQRTKLNERKKTQLATVAERLRRYRKGGE >gi|307679236|gb|GL457011.1| GENE 108 102571 - 105504 3630 977 aa, chain + ## HITS:1 COG:BH0012 KEGG:ns NR:ns ## COG: BH0012 COG5412 # Protein_GI_number: 15612575 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Bacillus halodurans # 610 976 137 509 509 125 28.0 4e-28 MENDKEKTPLSEAKKSLAGVQQALKSMSGEYALLSGYLGKISAGVNQSATVMNTFKTVMQ QSGETVKKTGDETAKAADQMNTALTDSAEQAGEAAKKAGKETSDGFTNAQNNMLSFGTAM TSAVSLPMLNVLKTAMGVGAGVSGEFQGMQGLIMASAGGISDSLQGELQGALTQMNQSFE AAAQVIQSVMAPGMEILVQVVITVVKGITALVNLFIKLPKPVQVFIVAIMGILAAIGPML IMVTMAQQKFQQFSAGLALVQGNIGKLGGGLSKLSASFSALGGGPLILIVAAVLAAVAAF IYFYKTNETFRNSINSLASAIQGAVSAAFGKLVGLLQQIQPAFQQIMAVFKQFFAVGLEK MATIFSTIGCVLAGVFASGLQLGSNLLGQFGGTFDKAGLAVGLLVKVLTKVALAALGISG PFGLIISLIVSFVTAWMKTGDLSAGGITQVFDNLGNTITSVTTMLAANLPKVIQLFTTVL TSILGKITEAIPSIVTALSSLITLIVGAIVANLPVLIEAATQIITTLIQGITTVLPMLIE VGLSLLMTLVNAIVTALPTITTAAINIITTLVTAFVTALPMLVTAGVSIITALVNAFVTM LPLILTAGLQILMALITGIMTILPQLIQSALTIILALVTALVGALPQIISAGVKLLMALI QGIISILPTLVAAAITLILTLVNALIGALPQIISAGVKLLIALIQGIISILPQLVTAAIT LITALMGAFINALPQLLSAGIQLIQALINGVLSLLGTLLSAAGTLISQMITKIGSYFGQL LASGGQLVENIKNGVTNAADQVKNAIGSVIEGAWQAIQGWFSKFTDAGANIVGMIADGIT GAIGKAKEAIDGVVSKIRNFLPFSPAKEGPLSDLHKLNFGGTIATGIYAGETAVSRAMAS ILDLPLLNDFALDLAGRGNFTATIDHRLENDAYNRPLFVTVESTLDGKVVAATTAPYLAT ELQRQQVKQNNRLGRRG >gi|307679236|gb|GL457011.1| GENE 109 105506 - 106432 1170 308 aa, chain + ## HITS:1 COG:no KEGG:EF1289 NR:ns ## KEGG: EF1289 # Name: not_defined # Def: tail protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 308 1 308 308 617 99.0 1e-175 MYKFVDTNQATHSTPLPSEALNFNGQFLEKVIPGYQTLSVSGRELVPSEIESYQLGIRDG KRHVYARIPERELTVKYRLSAVNNEAFRDAFNHLNVALFTEKDVSIWFNDEPEMLWFGSK SSVSDVPEGVNQVTGTFTLLLSDPYKYTRSDATSVMWGSPTITFQANYLMGNTGSGAVDF PILIEGGAYWGSTMITFQNRAYTMGDLGKEVRPIEIYPTVEGLKVKPIIILTGTGRGVWI KTRNDTINLGDFDRSEIIIDTENFYLTKNGASMIRPMNDFYLYPNEPLYIQAKDSDFRLT IRYPNRFV >gi|307679236|gb|GL457011.1| GENE 110 106445 - 107902 1205 485 aa, chain + ## HITS:1 COG:no KEGG:EF1290 NR:ns ## KEGG: EF1290 # Name: not_defined # Def: structural protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 485 1 485 485 960 99.0 0 MLMALDLKRTYTAILDNAYQVSYEKIENKIGSLDFTMPLDDPKNEFIAEMQWVELTDNEN EYIGLYRVMPTTIKKDANNNQIHYSATEALCTLGDTVLFGCHEIKNKTTKEAIQFLLNKQ KTKHWVLKKCDFSRKLTYKWENENGLVEPLFSIPADFEEEYLWQWNTEVYPFELSLVKPP TEPVARIQEGYNMQGFEIERNPKMLINRIYPLGSGEGVNKVNIRSVNQGVPYLENKAAID RYGLLESIWVEQRFSDPKALKENALRMLEEWTKPQVSWVVTAADLIKLTDQPLAIDRLRL GTVIMINTNEFGSVNLRIKKESKKDVFGAPQDIQLELGNLQETIHSTMTAFSRKQEISET YAQGATTLLNRSIQGELNKTQPVELNLYFDEDILYVNTAELTFKATAKGPSHSVTNIDLV VDGKKLPQLSLQQQRLNILSYLRKTTDGKIERGNHTLQFFSHQPLWLDASVICRVYIQSQ LGGQF >gi|307679236|gb|GL457011.1| GENE 111 107935 - 109704 1667 589 aa, chain + ## HITS:1 COG:no KEGG:EF1291 NR:ns ## KEGG: EF1291 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 589 1 589 589 1007 93.0 0 MSVEHIEELDTLNQGRLKINAILDQSNASAEKVDAYQVQLTNGISEAKNIADEAGKEAVQ IATDAGNQANETANQAMNNAKTAITIAGNAVSTANNNKQEFDTLRNDFDQLVAEAGDSNP EIVQARTDTQGIKQATLANRLQIDLNNRMTKADGISLLAKPTTVKLKLDFNGKTAGNTAT NANSYSTDFTAKILKKPTDVWEEVSQADYNKMASRDDEGVKTGSTQSGVIPQQLAAFNLV EAAKKLIPQMFETFTTDEAVAFIRQNVQFFTINQRVKAAAPNNQTIKIAAYLPTTDNWVT QIQESAKEFGDFSIQINDQNFITDEGFIYLMSYTDSSNGVTPASLEVDYMGLHIGLSVDA QAVLAKSGFVQAEQLNTHVENQDNPHQVTAEQVGLGNVENYGFASDSEAVAGTLTSKYMH PKNVAEAIKGQAVTQTGDQEIAGVKNFVTMPTVNGLPLESSRMAIYEASGVGEVEAKYQA AFNKDNMKFVLIRVGNRVDAFVRCNLSDPTKLNTHMPKIFNIPTGYKMSSKISASVWNIP LSVAPAAFPYPNCNALYEIGNQGIIFASSRAGNIYLQGSWYTDDPFPTK >gi|307679236|gb|GL457011.1| GENE 112 109728 - 110123 489 131 aa, chain + ## HITS:1 COG:lin0175 KEGG:ns NR:ns ## COG: lin0175 COG4824 # Protein_GI_number: 16799252 # Func_class: R General function prediction only # Function: Phage-related holin (Lysis protein) # Organism: Listeria innocua # 15 124 12 122 140 66 36.0 9e-12 MERYLNTITMLLSIFGGIVVRLLGGLDQLLDVFLFLIIVDFITGWIKAIATKELSSRIGM LGIAKKVTMLFVVAVAVRVEKVVGNNLPIREMVLIFYIANEGLSFFENIATFIPMPKKLK ELFIQLKNKDD >gi|307679236|gb|GL457011.1| GENE 113 110269 - 111366 1213 365 aa, chain + ## HITS:1 COG:SP1937 KEGG:ns NR:ns ## COG: SP1937 COG5263 # Protein_GI_number: 15901761 # Func_class: R General function prediction only # Function: FOG: Glucan-binding domain (YG repeat) # Organism: Streptococcus pneumoniae TIGR4 # 50 200 26 177 318 83 36.0 8e-16 MFKKLMIQLALVIGLSLTIPMTACAYTIEADPINFTYFPGSATNELIVLHESGNERNLGP HSLDNEVAYMKRNWSNAYVSYFVGSGGRVKQLAPAGQIQYGAGSLANQKAYAQIELARTN NATTFKKDYAAYVNLARDLAQNIGADFSLDDGTGYGIVTHDWITKNWWGDHTDPYGYLAR WGISKAQLAQDLQTGVSETGETVIIQPGKPNAPKYQVGQAIRFTSIYPTPDALINEHLSA EALWTQVGTITAKLPDRQNLYRIENSGHLLGYVNDGDIAELWRPQTKKSFLIGVDEGIVL RAGQPSLSAPIYGIWPKNTRFYYDAFYIADGYVFIGGTDTSGARIYLPIGPNDGNAQNTW GSFTS >gi|307679236|gb|GL457011.1| GENE 114 111520 - 112440 977 306 aa, chain + ## HITS:1 COG:lin1365 KEGG:ns NR:ns ## COG: lin1365 COG0130 # Protein_GI_number: 16800433 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridine synthase # Organism: Listeria innocua # 1 303 1 299 304 312 53.0 6e-85 MDGILPLWKERGMTSHDCVFKLRKILHTKKIGHGGTLDPDVEGVLPICVGKGTKVIEYMV DSGKTYEGEITLGFATTTEDVSGEIVEKKPVTAPLSTEQIDQAMAEMTGEITQIPPMFSA VKVNGKRLYEYARNGEEVERPQRKAMIYSFERTSEPIFNESAQTQSWRFKVVCGKGTYVR TLSVDTGKKLGYPAHMSDLTRTASGGLQAAQCLTLEEVAKQMAAETIDQCLLPIETAVEQ FPRIDLSDELYQKVKNGMRLHKKELGIKAMPESLVALFYQNQVVSLYMPHPTHDKLLKPS KVLRNN >gi|307679236|gb|GL457011.1| GENE 115 112466 - 113416 608 316 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 [Bacillus selenitireducens MLS10] # 1 310 1 312 317 238 41 1e-61 MQVIQLHHPYEPNQIPNEEVVMVLGFFDGVHKGHQKVIETGKKIAEEKGLKLAVMTFNQH PSIVFQKVLPENMKYLTSLEQKERLMANLGVNILYIVEFTSAFAQLKPQDFVDQYIVNLN SAVAVSGFDYTYGPKEIAGVKQLPTYAQGRFEVVTVPKEEMTGAKISSTRIREKMEAGEM EEVTELLGYIYETEGTVVHGDARGRLLGFPTANVKVKSTVRLPRIGVYAVQIEVGGKWYV GMGSIGHNDTFGEGRDLTVEVYILDFHQDIYGEQVVVRWNHYLRDQVKFNGAEALIDQLK QDERDTADYFQQSEDK >gi|307679236|gb|GL457011.1| GENE 116 113416 - 114012 522 198 aa, chain + ## HITS:1 COG:MA1701 KEGG:ns NR:ns ## COG: MA1701 COG3153 # Protein_GI_number: 20090553 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Methanosarcina acetivorans str.C2A # 1 198 17 207 217 117 34.0 1e-26 MKIRQEKPAEYQAVERLTYQAFKELNLIENWRPTEHFIVHLLRESADFIPELSLVSETDQ GKLTGHIMSSEAKLRLPDHTEKAVLTVGPLSVHPEAQNTGVGSALIKHSVQKAKELGIGG LIILGHPTYYTKFGFVPATTFQITLPEKETSEALLALELLPGYFGASGGEWHFSTCFAYP ETHLVELEAFEADLGINE >gi|307679236|gb|GL457011.1| GENE 117 114162 - 114485 348 107 aa, chain + ## HITS:1 COG:lin0727 KEGG:ns NR:ns ## COG: lin0727 COG1695 # Protein_GI_number: 16799802 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 4 103 5 104 110 114 63.0 5e-26 MKQTELLKGILEGLVLAIIQRKETYGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVI AEKKPSEKGPMRKFYRLTSSGEAELADFWQRWTLLSKQVNKMKKMEG >gi|307679236|gb|GL457011.1| GENE 118 114489 - 114830 470 113 aa, chain + ## HITS:1 COG:lin0728 KEGG:ns NR:ns ## COG: lin0728 COG4817 # Protein_GI_number: 16799803 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 14 108 11 104 107 73 39.0 1e-13 MSNFKALIKKVVGDKKEYKEYKRRIAALPAEYRQVFQEIEKYAWHFSDHSGANMFNALTD LLDLFEEGAANGTPIKNITGEKVGDFAETIVNEVAGKWTDKQKEKLNHQFSKQ >gi|307679236|gb|GL457011.1| GENE 119 114856 - 115116 340 86 aa, chain + ## HITS:1 COG:no KEGG:EF1299 NR:ns ## KEGG: EF1299 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 86 1 86 86 129 100.0 4e-29 MVENFFKEGKLLVIPKKNAKKVQVFQRVANQFEFGKEYTEKEVNQRLREIYEDYALLRRY LVDYQYLERDKFGKIYQKCEQHTKII >gi|307679236|gb|GL457011.1| GENE 120 115070 - 115165 59 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEKFIRNVSNTQKLYKWLFLKVAKLGEMNQV >gi|307679236|gb|GL457011.1| GENE 121 115275 - 116450 997 391 aa, chain + ## HITS:1 COG:SPy0609 KEGG:ns NR:ns ## COG: SPy0609 COG0772 # Protein_GI_number: 15674690 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Streptococcus pyogenes M1 GAS # 11 378 23 405 434 204 35.0 2e-52 MNLRTLGLTKILLTFIILSIIGALMIYSASSYDLLMQGVKPTAVFIKQGIIMCLSWVLMF VIYKVRLEVLFNKKIAIGLLLVSVLLLLMVRLPFFGVAANGAQRWISLFGIQFQPSELCN FAIIYYLSCYLGEKENGLTTKQLRKQWLFVLVVAFLVLIQPKVGGAILILVIGSVLIFSA SIHAKFSVIAAGIVVASAALLSKIIIFLGDHRYLPHFFAHVYDRLVVLKNPFLSFHDRGF QPSMAYLAMYNGGFWGTGLANGMVKKGGLPEGQTDFIFAVIVEELGLIGGLLLLFLLLFL AASILRSSCVIKNHCYGLFLFGGGTLILAQTAINIGGVLGLIPMTGIPLPFVSYGGTSYL IFSVALGIVIKIIANERRQLNGQYKKIQLTS >gi|307679236|gb|GL457011.1| GENE 122 116416 - 117564 871 382 aa, chain + ## HITS:1 COG:L115706 KEGG:ns NR:ns ## COG: L115706 COG0772 # Protein_GI_number: 15672878 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Lactococcus lactis # 3 375 7 381 414 247 39.0 3e-65 MVNTKKFNLHLNYDLLLPIFLLTLLSSGVQYWIAVNEGKDGTVPALKQLFFIFVGYAGMF LASRLSQKFIWKVAPFFYGFSLILMSALYFSYDKGMYLLTGTKRWLDLGFIKFQPSEIAK IAFILMLAKIIVQHEQQDWSDKWRSDKQLLKKIVAVSVPVFFLMAVQKDFGTSLVFVTII LSLLVISGIDRKILIIIFSALATLGVVLILLVFTEWGHKVLFFLHFKQYQLDRILAWIHP YDYVDKISYQQVQGLLAIGSGGLFGKGVHGIEVYVPVRESDMVFTFIGEAWGFVGSATVV FLYFYLFYQVLVAGLRSNSRFCMYICVALIFSLVFQTVENIGAVIGLLPLKGIPLPFLSQ GGTSLVMAITSLGFVKGREAAT >gi|307679236|gb|GL457011.1| GENE 123 117626 - 118513 805 295 aa, chain - ## HITS:1 COG:ECs0391 KEGG:ns NR:ns ## COG: ECs0391 COG0583 # Protein_GI_number: 15829645 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 6 244 6 241 299 84 27.0 3e-16 MELFRLHYFLELCKVKQFTKAAENLAISQAALSKQIKILEATLGAELFNRQGQTTTLTPA GLILEKYCWRITNELVSIEEELKEINHSSNHIYVATYLCDLEYKLNDLLMTTLTDRSSNL QVHTIITENILQSLETMDADFGISFADLPLPEHIGKIDLFTANYQFILRNDHPALAKATT EEILKELTMYPFVRLNTEFSEQNKLTNWLDTTFSNFSPEKVIQVDTLSLITHLVSHSDSF AIVPEYTNIQLLDNSIHTLTYQELPKRNMAVYYLKERYMSRQLQQLLAECQKQFQ >gi|307679236|gb|GL457011.1| GENE 124 118537 - 118809 186 90 aa, chain - ## HITS:1 COG:no KEGG:EF1303 NR:ns ## KEGG: EF1303 # Name: not_defined # Def: LysR family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 90 202 291 291 187 98.0 1e-46 MFKRWERKINWENRQIVIELPSLHLVLDMVQREKACSILPYSLTDELNRRNLVGIPLEDS PERAIYLVQNNHHGHCEAHRYLFEQLRYLF >gi|307679236|gb|GL457011.1| GENE 125 118734 - 119411 648 225 aa, chain - ## HITS:1 COG:ECs2301 KEGG:ns NR:ns ## COG: ECs2301 COG0583 # Protein_GI_number: 15831555 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 197 3 201 297 89 29.0 5e-18 MKLQQLEYFMAVSKYASFTLASQKLHTSQPYLSTQLKELERELGASLILRDKKHCRLSPA GEVVAKRTEMIFALIKEAQEEINELVTQGSTTTIRIGTNLIDIDKAFGEVLLLFNQSYPY VSIDFKYYYDLETALETDLIDIGIGIFLDTSIPLEKELIYTESYLLCVNKNHPLAHADSV TIDEIRSLPFAAYSDQVYEKKCLNVGNVKSIGKIGKSSSNFLLFI >gi|307679236|gb|GL457011.1| GENE 126 119890 - 119979 97 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEDEPIVNSSQQQINEVKENGKENASLGP >gi|307679236|gb|GL457011.1| GENE 127 119948 - 122608 2606 886 aa, chain + ## HITS:1 COG:L85514 KEGG:ns NR:ns ## COG: L85514 COG0474 # Protein_GI_number: 15673239 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 20 886 33 910 910 921 53.0 0 MEKKMRHLGHDYSYKKFAHSEAEKVLQRFGSTWDGIKHQDIEELQERYGRNKIMNEKKAS RLRLFIKSYITPFTLVLLALATISFFTEYVYATPEEKDVTGVLIMLAMVILSGTMSFVQS VKSSNAVEKLQNMIKVTATVIRDKKQMEIPIEEVVCGDLVQLSAGDMIPADLRLIQSKDL FVSQSSLTGESFPIEKHATHQKDSDQIDTEYDNLLFLGTNVISGTGLGIVIKVGNQTLFG RMASDNGEEQQQTSFETGINKTTWVLIRFMLVITPTVFLINGLTKGDWVEALMFAIATAV GLTPEMLPMIVTTNLVKGSREMAKEGTIMKNVNAIQNFGGMDVLCTDKTGTLTQDKVILE YHYNIGCQEDQKVLDLAFLNSYFQTGLRNLMDNAVIQAATQESDIQSDDFYKVDEIPFDF NRRRMSVIIKEFKTRETRLITKGAVEEMLLVCTQVLLDGEIVPLTETLRQKITKDVEALN RDGLRVLAIADKKVETAEWEYTTKDESELILQGYLAFLDPPKETAAAAIHALHQHNVAVK VLTGDNQYVTHSVCKEVGLAGEKIITGNELQQLNQEELRKTVQAYNIFAKITPDQKVRIV NALTENGQTVGFLGDGINDAGAMRAADVGISVDTAVDVAKESADVILLRKDLMVLEKGIL SGRRVFTNTMKYVKLTASSNFGNVFSVIPASIFLPFLPIAPIQSLLLNLIYDTSCMSVPW DKVDEEYVEKPKKWEPKSIGNFMRWFGPTSSIFDIVTYLFMYFIVCPAILGGSFFELNGA DQLLFIGIFHAGWFIESLWSQMLVLHFLRTEKMPFLQSSASGIMTLVTTAGIVLGTVLPF TAFGAELGFVGLSPSYFLYLIPTIVAYLALVAFIKVLYVKRYGQLL >gi|307679236|gb|GL457011.1| GENE 128 122816 - 124000 1160 394 aa, chain + ## HITS:1 COG:lin1513 KEGG:ns NR:ns ## COG: lin1513 COG0635 # Protein_GI_number: 16800581 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Listeria innocua # 17 389 13 385 385 425 54.0 1e-119 MTKTNQLSTSTPMFDRSAYIHIPFCEHICYYCDFNKVFLEGQPVDEYIQSLLKEIRLTQA LYPEQEMKTIYIGGGTPTSLSAKQLDVLLKGVREQLTFDDRNEFTVEANPGDLTQEKLQV MKNYGVNRLSMGVQTFDDRLLKKIGRKHTAADVYETMKFLEKENFTNVSIDLIYALPGQT LESFRDTLTRALALDLPHYSLYSLILENKTMFMNWVRQGRLQLPEEEIEAQMFDETIEAM EKKGRHQYEVSNFALTGKESQHNLAYWNNDHYYGFGAGASGYLGQTRYKNHGPIQHYLKP LRENQLPIVETEELTRLNQIEEELFLGLRKKVGISKQKFQQKFQEPIEAIYGEVIQRLIK EELLIEEADILRLTKKGLFVGNNVFEAFLLSEKE >gi|307679236|gb|GL457011.1| GENE 129 124226 - 125269 1156 347 aa, chain + ## HITS:1 COG:lin1512 KEGG:ns NR:ns ## COG: lin1512 COG1420 # Protein_GI_number: 16800580 # Func_class: K Transcription # Function: Transcriptional regulator of heat shock gene # Organism: Listeria innocua # 1 343 1 341 345 265 40.0 9e-71 MITERQQNILRLIIQNYTNTGLPVGSKKLMEDGIASSSATIRNDMKALEEYGLLAKTHSS SGRIPSMAGYRYYVDHLLQPTQVEENELRRIRQSFGKEFHEINDIIRQSAEILSELTSYT AFSLGPEVKERKLTGFRMVPLNDRQVLAIIVTDKGNVENQVFAIPAAVSSQDLEKMTQII NDKLVGQPLLTVYHRLRTEIPMILHRYFQTPEGMMNLFDEMLGHAFEEKVFVGGRMNLLD FGIKQDIEQLKSVYSFMQNSDELTHLLNGSATTENPIVFRIGSEIGNNLLEDMSMITATY EVSGHGKGTIALLGPTSMPYSKIFGLVDTFRHELASQLGDYYRFLGN >gi|307679236|gb|GL457011.1| GENE 130 125324 - 125863 886 179 aa, chain + ## HITS:1 COG:SP0516 KEGG:ns NR:ns ## COG: SP0516 COG0576 # Protein_GI_number: 15900430 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone GrpE (heat shock protein) # Organism: Streptococcus pneumoniae TIGR4 # 25 177 24 172 174 132 55.0 3e-31 MSKKEEKQEELQEEMEAVDAAGVSEVEVEATEIENLKAELSEMEDKFLRARAEIANMSNR NKNERELLVRYRSQDLGKKILPSIDNLERAMAIEVSDEQGESLKKGISMVLESITVALKE EGIEEIPAMGETFDPNLHQAVQTVPASEETPADTIVEVLQKGYKLQDRVLRPSMVIVAQ >gi|307679236|gb|GL457011.1| GENE 131 125923 - 127752 2631 609 aa, chain + ## HITS:1 COG:BS_dnaK KEGG:ns NR:ns ## COG: BS_dnaK COG0443 # Protein_GI_number: 16079601 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Bacillus subtilis # 1 607 1 607 611 857 81.0 0 MSKIIGIDLGTTNSAVAVLEGGEAKIIANPEGNRTTPSVVSFKNGEIQVGEVAKRQAVTN PNTISSIKRHMGEAGYKVDVEGKSYTPQEVSAMILQYLKGFAEDYLGEKVEKAVITVPAY FNDAQRQATKDAGKIAGLEVERIVNEPTAAALAYGLDKTDKDEKILVFDLGGGTFDVSIL ELGDGVFDVLSTAGDNNLGGDDFDNKIIDYMVAEFKKENGIDLANDKMALQRLKDAAEKA KKDLSGVTSTQISLPFITAGEAGPLHLEMNLTRAKFDELTSDLVERTKVPVRQALKDAGL NPSEIDEVILVGGSTRIPAVVEAVRKETNKEPNKSVNPDEVVAMGAAIQGGVITGDVKDV VLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSKSQVFSTAADNQPAVDIHVLQGERPMAA DNKTLGRFQLTDIPAAPRGVPQIEVSFDIDKNGIVNVRAKDLGTQKEQTITIKSSSGLSD DEIERMVKDAEANAEADKQRKEEVDLRNDADALLFTVDKTLKELEGKVDAEEVKKAEDAR DELKAAIEANDIEQMKAKRDSLNEIVQNLTVKLYEQAAQQQAQENPEAAQGGADDVVDAD FEEVNGDDK >gi|307679236|gb|GL457011.1| GENE 132 127867 - 127989 129 40 aa, chain + ## HITS:1 COG:no KEGG:EF1309 NR:ns ## KEGG: EF1309 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 40 1 40 40 62 100.0 5e-09 MKELWYDYNDVKQAENTYSQLVTLIQGVTDNPTRETESNR >gi|307679236|gb|GL457011.1| GENE 133 128044 - 129213 1607 389 aa, chain + ## HITS:1 COG:L0272 KEGG:ns NR:ns ## COG: L0272 COG0484 # Protein_GI_number: 15674206 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Lactococcus lactis # 6 380 5 379 379 474 71.0 1e-133 MATKRDYYEVLGLAKGASDDEIKKAYRKLSKKYHPDINKEADAEEKFKEVSEAYEVLSDP QKKAAYDQYGHAGTDPNYGGGAGGFGGFGGGGFSSSGFGGFEDIFDSFFGGGGGRSVDPN APRQGADLQYTIQLKFEEAIFGVEKEIKYNREDTCATCGGNGAKPGTHPETCHKCHGSGT INVERQTPLGRMMSRQTCDVCHGTGKEIKEPCPTCHGTGHEKKAHTVKVNVPAGVEDGQQ MRLANQGEAGTNGGPYGDLYVVFRVEDSDIFDRDGAEIYYDLPVSFVQAALGDEVTVPTV HGDVKLKIPAGTQTGTNFRLRGKGAPRLRGGGNGDQHVKVKLITPKNLNEEQKDALRAFA KAGGQNVTEQQEEGFFDKMKDAFGGKKKK >gi|307679236|gb|GL457011.1| GENE 134 129452 - 130186 808 244 aa, chain + ## HITS:1 COG:lin0658 KEGG:ns NR:ns ## COG: lin0658 COG0639 # Protein_GI_number: 16799733 # Func_class: T Signal transduction mechanisms # Function: Diadenosine tetraphosphatase and related serine/threonine protein phosphatases # Organism: Listeria innocua # 1 235 1 235 235 194 40.0 2e-49 MKPYVYVISDIHGQADLFDALLTDYDPVEHQLVLIGDLNDRGPHSKACFLKGKELVEQHD AVYLRGNHEEYFLQFLQNPEDWFAGYVRNGGKETIESLLHPGATAEYSPTEMALMIRSRY PELVDFLTKRPLYFEWQHYLFVHAGVDLTMEDWRQTAPKDFLWIREPFHQGKNNTGKTIV FGHTITPMLHGDMQTTDLWQSDGKIGIDGGAIFGGSVHGVIFNEKGIVQDIEYQKRTPAW QPEF >gi|307679236|gb|GL457011.1| GENE 135 130284 - 132476 195 730 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229231694|ref|ZP_04356122.1| SSU ribosomal protein S1P [Cryptobacterium curtum DSM 15641] # 651 720 204 272 403 79 60 1e-13 MAEAYNEEVVALLQKELTTYRSKQITTVLTLLNEGNTVPFIARYRKEMTGSLDEVQIREI EERYHYLQNLKKRKEEVLRLIEEQGKLTKELKTDIQKAVKMQQVEDLYRPYKQKRRTKAT IAKEKGLEPLADWLLSLPENADILAKAATFINEEKEVATAEIALQGAHEILAERISDEPK YRTWLRDYMVKHAQYVSVVKDEEKDEKRTYEMYYDFAEPVSKMVPHRVLATNRGEKEDIL KVSLVADETKINDYFQRQLIGKQATSLAAPYIEAAYLDSYKRFIGPAIEREIRNELTEKA DEQAIAIFGENLRNLLLQSPLKGKVVLGFDPAYRTGCKLAVVDETGKVLAIQVIYPHKPA TAAKREAAGPAFKKIIEDYQVDMVAIGNGTASRESELFVAEQLKAVKRDVFYVIVNEAGA SVYSASEVARKEFPDLQVEERSAVSIARRLQDPLAELVKIDPKAVGVGQYQHDVSQKRLA EQLDFVVETAVNQVGVDVNTASAQLLQHISGLNKTTAQNLVTYRDENGVFTARNQVKKVP RLGPKAFEQAIGFLRIPNGKNVLDNTGIHPESYPVAQAILEKAEIASKELGTAEAIEKLK QLPVNQLATELEVGSETLTDIIASLIQPGRDMRDEMSAPLLRKDVLTMEDLKPGMEMQGT VRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVTVWVEDVDLKKGRISL TMLPRADRKE >gi|307679236|gb|GL457011.1| GENE 136 132479 - 132964 306 161 aa, chain + ## HITS:1 COG:SPy0581 KEGG:ns NR:ns ## COG: SPy0581 COG3091 # Protein_GI_number: 15674669 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 14 152 3 139 145 146 50.0 2e-35 MKESQPVLMTDQALQTLVEKISIVFFQKPFLHQATFNRRLKTTGGRYHLASHHLDFNPTV FLKYGQEELEKVIKHELCHYHLHLAGKGYQHKDKDFKELLAKTGGARYAPPLVERKKAVF HQYQCQSCGEVILRKRRIDTTRYVCGKCHGRLSWQAKKEQI >gi|307679236|gb|GL457011.1| GENE 137 133363 - 134580 1164 405 aa, chain + ## HITS:1 COG:L162604 KEGG:ns NR:ns ## COG: L162604 COG0436 # Protein_GI_number: 15672142 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Lactococcus lactis # 1 404 1 404 404 670 76.0 0 MRNFKKSDKLNNVSYDVRGPVLEEAERMQEEGIRILKLNTGNPAPFGFDAPNEIVRDMIV NVRDSEGYSDSKGIFSARKAIEQYCQLKKFPNVTINDIYTGNGVSELITMCMQGLLNNGD EVLVPMPDYPLWTASVSLAGGTPVHYICDEQAEWYPDIDDIKSKITSNTKAIVIINPNNP TGALYPKELLLEIVEVARQNDLIIYSDEIYDRLVMDGLVHVPIATLAPDLFVVTLNGLSK SHRVAGFRCGWMVLSGDKSRVKGYIEGLNMLASMRLCSNVLSQQIIQTALGGYQSVDDLL LPGGRIYEQREFIYNAINDIPGLSAVKPKAAFYIFPKIDTAKFDIYDDEKFVLDFLHKHH ILLVHGGGFNWQQPDHFRIVYLPKMEDLKTTADKMREFLSTYKQK >gi|307679236|gb|GL457011.1| GENE 138 134646 - 134822 322 58 aa, chain - ## HITS:1 COG:no KEGG:EF1315 NR:ns ## KEGG: EF1315 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 58 1 58 58 93 100.0 3e-18 MAEEKKVHFIWEKTNYSGFVEKEYENSYLIVVANPSPDMEEKYTNRMIISKKACETAE >gi|307679236|gb|GL457011.1| GENE 139 135000 - 135827 994 275 aa, chain + ## HITS:1 COG:no KEGG:EF1316 NR:ns ## KEGG: EF1316 # Name: not_defined # Def: Cro/CI family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 275 1 275 275 493 100.0 1e-138 MNSLGAVIKEIRKNRKLTQKMLSEDICSQSVLSRIENNEELPNVLVMQQLCDRLGVTVDQ IMRYKSGDVHVVTYSFEKMAEYFRHKKYQLLLNYLKENRIEEQLYLDTDWQKYYYYLGSC ELFVLNDYEKAIASLRKGLSFTYKADKLNVSDLEIQLISCLGATYGYMGNRVEAERFLSL SIHYFNQLPNERSNAELTKIFFNYADFLFKNYTEKDAEIYVDQGITWARKKNSYYYLSEL LNLKYLVLMRKNKHEEAERYLNLAQQMKNVESGNL >gi|307679236|gb|GL457011.1| GENE 140 135928 - 137076 1479 382 aa, chain + ## HITS:1 COG:SPy1694 KEGG:ns NR:ns ## COG: SPy1694 COG1820 # Protein_GI_number: 15675552 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Streptococcus pyogenes M1 GAS # 1 382 1 382 382 481 63.0 1e-135 MKTFIFADKFFLKSDVKGPGYLEITDGIFGNYTKDEPQGDVKIIREEGKWIAPGLVDTHI HGYMNHDVMDNDAEGIKVISEGLLSCGVTSFLPTTLTSSKERLTDVARTIGQVYQEVPGA KIQGIYFEGPFFTEEHKGAQNPSYFGDPDLDTFHEWQEASGGIIKKIALAPERNGVKEFV ETVTDEGVVVALGHSNATLEEADVAVEAGASVFVHAYNGMRGLNHREPGMVGALLTLQHV FSELICDGHHVHPQAAEVLMEKAGHDHVALITDCMMAGGMPDGNYNLGEFPVVVAEGTAR LDTGDLAGSILKLKEAIKNVVDWGIATPAQAIMMASLVPAISCKIDDQCGMIANGRDADF IVLEPTMELAATYLDGVERYRA >gi|307679236|gb|GL457011.1| GENE 141 137120 - 137506 576 128 aa, chain - ## HITS:1 COG:no KEGG:EF1318 NR:ns ## KEGG: EF1318 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 128 1 128 128 197 99.0 9e-50 MDFEQLKETLPDAKPQTFLQAILSQPQEEDAELTFSEEIDEQFVENCKFLASPETISETD VEHWRKQEFLVVAQSLDGDYLAGTLEQTFVIPSSLYKEDIEQFDKQLIDFFIAYENKEIT SAILPKEL >gi|307679236|gb|GL457011.1| GENE 142 137520 - 138179 739 219 aa, chain - ## HITS:1 COG:no KEGG:EF1319 NR:ns ## KEGG: EF1319 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 219 1 219 219 378 98.0 1e-104 MANRKKKPPFNSTIMLIGALIILILGAVGVKVPDALQDLFNVQPQTTTPSSTPAPKGDNP GPIENGKATFSAEELKDSSNGWITYHSLDRLKRATGADALLKPAMVNTGTSANKDIRPVG FISGKANHSRGHLIGRQMGGSGDDPRNLTTLYQNPVNTPYMTKYENQIRAALDRGETVRY RVTPVYNGNDLLAEKIILEAKSLKTNSPIDFSVTILNKQ >gi|307679236|gb|GL457011.1| GENE 143 138340 - 139041 344 233 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 4 218 2 219 245 137 37 5e-31 MAYIEVKNEYKRYQMGETTITANDGISFEVEKGEVAVILGPSGAGKSTVLNILGGMDSCD EGEIIIDGTDIAQFSEKQLTTYRRNDVGFVFQFYNLVPNLTAKENVELASQIVADALDST NVLQSVGLGERLDNFPAQLSGGEQQRVTIARAIAKKPKLLLCDEPTGALDYETGKQILTI LQNTARETGTTVLIITHNSAIAEMADRVIRINDAKVREMTVNDQPKLVAEIEW >gi|307679236|gb|GL457011.1| GENE 144 139051 - 141687 2277 878 aa, chain + ## HITS:1 COG:L111162 KEGG:ns NR:ns ## COG: L111162 COG0577 # Protein_GI_number: 15673086 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 8 876 7 894 896 582 37.0 1e-165 MKKTALIKTSLREIRQSTTRFLSIMGIIFLGVMVFVGLKATGPDMIKTANNYYQKEQLPD ARIISTMGLEKKDLTTLQSLKDVETVVPRYTIDATIGPQNNAVKLFGYRKNQAGSVNYQV VDGRLPKQTNEIALDTLAKTRYDYKMGDKITLNDVAIKEKGLTQTHFTVVGFINSAEYID NTSRGTTTVGSGTLNFFGVVSEKAFDSQRYPELLISFRSLKHQNTYFSDYEKKREQALNQ VKEALKNRPEEQIAALRDSAQPDINQGRQALETGKQALAQLEQQPGIPAEMLEKQKDELA KQEQLLAEKETELANLKAPTYYYFTREDNPGFSEYQDNADRISSLATLFPLFFFLIAALV SLTTMTRMVEEKRMEIGSLKALGYRNREIASIFITYATVASLTGALLGLAVGYYLFPKII FDAYGQMYNIPDLVTPWYLNYSLWGIIVALACTVGAALVTLRIDLLSTPATLLRPKAPKA GQRILLERIRPLWQRMSFIQKVTARNLFRYKRRMLMTVIGIAGCMGLLIVGFGLRDSIVD VATIQFNKIWHYQAVVTFKEQTTPEETKEYQETLRKLDGLNKTIPLYSEIFKTKGKGAPT QNITLYVPQDPSKMADFQLFNDRVTGEKYSLNDDGVIINEKLAKLFGYKVGDQLNLENSD NQTYHVKIAAIAENYTGHFVYMTPKLYQTMTKQKPEYNTEFLLFDKKLSSKQETSIGEAL TKQPKVLNITFLTAMKGSFDDMLKSLDIVIWVLIAVSGSLALIVLYNLTNINVSERIREL STIKVLGFYDREVTTYVYRENIILTFIGIIVGCFFGKILHQYILATVEVDLIMFSPIIHW PSYLYSAVITMCFTLFVMVIMHRKLKKINMIEALKSNE >gi|307679236|gb|GL457011.1| GENE 145 141880 - 142404 627 174 aa, chain + ## HITS:1 COG:no KEGG:EF1322 NR:ns ## KEGG: EF1322 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 174 1 174 174 305 100.0 5e-82 MLEGLPLETVYFYALVGSAVLAFLLIIFGDVFNFDGPVDPMLIIPWIAFTSLFGYLGEEL TAVNSWLILIVSGILSTIIVFFLNFYVLVPLKNSEATISISEKDMEGRVATVITPIPVRG MGEIQLKSVTGSLSRPAAFYVPQEVAAPRGSEVLIIELKERVCYVIPYEGSLKI >gi|307679236|gb|GL457011.1| GENE 146 142421 - 143890 2295 489 aa, chain + ## HITS:1 COG:BS_yuaG KEGG:ns NR:ns ## COG: BS_yuaG COG2268 # Protein_GI_number: 16080153 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 473 3 486 509 532 68.0 1e-151 MGILLPIIIAVLVLLMLLIVFVSKYQTAKPDEALIISGSYLGSKNVHVDEGGNKIKIVRG GGAFVLPVFQRSNRISLLSSKLDVSTPEVYTEQGVPVMCDGTSIIKIGSSVEEIATAAEQ FLGKTTEELENEAREVLEGHLRSILGSMTVEEIYQNRDKFSQSVQEVASVDLAKMGLVIV SFTIKEVRDKNGYLDSLGKPRIAQVKRDADIAEAEALKETRIKKAEAEKESQQAELQRQT EIAEASKEKELKLALYKQEQDIAKAKADQAYNLESARAQQHVVEQEMEVKVVERQKQIEL EEKEITRREKQYDSEVKKKADADRYAREQEALAQKAREVAEAEAERFKVEALAEAEANKT RLTGQAQAEAILARGAAEAEAKQKIADAFKEYGEAAVLSMVMEMLPQLMKEAAQPLGNID KISVVDTGAGGENSGANRITNYATNLLAGTQETLKETTGLDVKELIENFSKKGTSNSVNY HATEGSEKE >gi|307679236|gb|GL457011.1| GENE 147 144037 - 144270 384 77 aa, chain + ## HITS:1 COG:no KEGG:EF1324 NR:ns ## KEGG: EF1324 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 77 1 77 77 119 100.0 3e-26 MSKKNKDIEVRVEEEKAQYNGANVLMNKLFIGKKEIGRVIPQNDKKFIIEIDGKQEGTAK NLDEAFETIIRQWNLSE >gi|307679236|gb|GL457011.1| GENE 148 144683 - 144862 252 59 aa, chain + ## HITS:1 COG:no KEGG:EF1325 NR:ns ## KEGG: EF1325 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 59 1 59 59 93 100.0 2e-18 MNFKEKITEMVENVYDLARDGKYDVKVDLIPRKKGNIKSGVKVTSSRNTAHNIKWRSKN >gi|307679236|gb|GL457011.1| GENE 149 144918 - 145526 578 202 aa, chain - ## HITS:1 COG:L108801 KEGG:ns NR:ns ## COG: L108801 COG1309 # Protein_GI_number: 15674221 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 202 1 202 204 198 48.0 6e-51 MAKKTDLRVQRTRKMIIEAFFKLVETKGYEAVTIQDIADEAMINRATFYAHFKDKQHLYD AIFTFTLSAFTAILDSQQLVNGNRVRVKHIEELLTQLYINIQENKSFFLTIMDNNFNEHF RKRLAEIIEEKYATIFSQLRITENDIDVPIDFVIEYMTSIFIGTLHWWITSETDMTPNHL AQLVIKLVGNGHLTVLGIELEK >gi|307679236|gb|GL457011.1| GENE 150 145705 - 149952 3853 1415 aa, chain + ## HITS:1 COG:L104115_1 KEGG:ns NR:ns ## COG: L104115_1 COG1924 # Protein_GI_number: 15674220 # Func_class: I Lipid transport and metabolism # Function: Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) # Organism: Lactococcus lactis # 2 633 4 634 634 908 70.0 0 MVMRAGIDVGSTTVKLVFLNKQNQPIFTKYERHFSDVKAATERILKEGLARIGADQPVAM SITGSGGMGLAEVLGIPFVQEVIACTRTVETIIPETDVAIELGGEDAKITFFDGALEQRM NGSCAGGTGAFIDQMAVLLKTDANGVNELAKNYQTIYPIASRCGVFAKTDVQPLINEGAA KEDIAASIFQAVVNQTIAGLAAGRKIKGKVAFLGGPLFFMSELRKRFIETLAIQPEDVIF PEQPQLFVAMGAALYSEDAAECTLEELIQRLVNSQATDLQPSDTLPPLFNSAEDLADFRE RHAQAQAKEKPLSQHTGVTFLGIDAGSTTTKVTLIDEDGHLLFSFYGNNQGQPLETTMTV LKSLYQQLPEEVFIGKAAVTGYGEQLIKNALKVDIGEVETMAHYKAANHFQPGVDFILDI GGQDMKAMTIKNGVLSSIQLNEACSSGCGSFIETFAQSLKYNVKDFALAALESQAPVDLG SRCTVFMNSKVKQVQKEGASVGDISAGLSYSVIKNAIYKVIKVRRPEELGEKIVCQGGTF YNEAVLRAFEKISGREVVRPSIAGLMGAYGAALIALDAYEIGEETTLLSLGELAAFTSEK EFTHCGLCENNCQLTVTVFSDGRQFITGNRCERGARIKIKREERKVNLVDYKYRKLFKYR PLRENKAFRGRLGIPRVLNMYENYPLWHTFFTDLGFRVELSPRSNKQIYEQGLETIPSDT VCYPAKMAHGHIQALIDAQVPIIFYPGVVFEQQETVEADNHFNCPIVQSYPDVIRNNVDA IREGQVDYRNPYLNLANEAAVAKVLAENFADLGISLEEIQTALHHGYQELAAFKKEIQEK GEETLAMLTEKGQRGIVLSGRPYHLDPEINHGIAEVITQEGFHVLTEDSISHLGDVQNLR VVNQWVYHSRLYAAAKVVAKTKNLELVQLNSFGCGLDAVTTDQVEEIMDRSGKIYTVLKI DEGANLGAIRIRLRSLKAAVNEREKQQFVPHMQMEEPEKIVFTKQMKKTHTLLLPMLSPI HQSGLVDVALQASGYHVVCLPAQDKEAVNVGLKYVNNDACYPAIISIGQLVEALESGQYD LDNVSVLMTQTGGGCRATNYIPLLRKALNDAGFSQVPVVSVSMGNKGVESNPGFKFTLPM IKRLVVAFLYGDLFERVVYRTRPYETEKGMVDQLHQDWLKRVEANVRNGSLTQFNHFMKK IIRTFDEIPLQEIKKPKVGVVGEILVKYSPTANNDIVRLLEEEGAEAVVPDIVGFMNYSL YNQIWKYENMGMSKQSKRLAEFAIKIIELVEKPMDKALRKSVRFDGIHSIYDMAADASKI LSIGNHTGEGWFLTAEMIELLKHEVNNIVCMQPFGCLPNHIVGKGVVKELRRQYPQANIA AVDYDPGVSLVNQLNRIRLMMATANKLLKEENVKR >gi|307679236|gb|GL457011.1| GENE 151 150158 - 150865 921 235 aa, chain + ## HITS:1 COG:L0151 KEGG:ns NR:ns ## COG: L0151 COG2188 # Protein_GI_number: 15673419 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 3 235 4 235 235 264 56.0 1e-70 MVQNIPIYIQIHDKIKEDIEKGVWSIGDRLPSERELALKFDVSRMTLRQAIQTLADEGIL ERKIGSGTYVARKKVQETMTGTTSFTEITLSQNRVPSSRTVSYFVAKPSSSEMEKLQLGP EDSILRMERIRFADDIPICFEVASIPYSLVSQYGKSEITNSFYKTLEAKSGHKIGHSNQT ISAVQASEQIAEYLEIKRGDAILRVRQVSYFENGLPFEYVRTQYAGSRFEFYLEK >gi|307679236|gb|GL457011.1| GENE 152 150969 - 151037 163 22 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNLSGRIQIKISESISIQINIE >gi|307679236|gb|GL457011.1| GENE 153 151391 - 151456 168 21 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKINVRKADTVDATAWWIII >gi|307679236|gb|GL457011.1| GENE 154 151525 - 151608 143 27 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKYKYPRIKPIYPLYQLTKERFRVGPN >gi|307679236|gb|GL457011.1| GENE 155 151764 - 152522 486 252 aa, chain + ## HITS:1 COG:Ta0844 KEGG:ns NR:ns ## COG: Ta0844 COG0476 # Protein_GI_number: 16081900 # Func_class: H Coenzyme transport and metabolism # Function: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 # Organism: Thermoplasma acidophilum # 2 190 29 213 261 99 35.0 7e-21 MKILLLGLGGGGSNILTLLAGLGPKMIRMVDYDRVEASNLGRQLLYREADIGEKKTVVAK RAINEMNSNINVETVDKKIIDVNDVVELTEGIDIIVCAIDEPPFLIHRIVNEAIVKVGLP CVFGASQVSRGRVYTVIPQKTGCFDCMNLNFSKNDPKFVEQFVGFRNIQFTPPSIAYGPG IFQLTASIIDELIRVVTRYAEPKSLGTQYEINYEDGNSFTHKTWPRFESECPTCGKGDVS QWEIFQYYQEKK >gi|307679236|gb|GL457011.1| GENE 156 152486 - 153358 138 290 aa, chain + ## HITS:1 COG:no KEGG:EF1330 NR:ns ## KEGG: EF1330 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 290 1 266 266 421 91.0 1e-116 MGNISILSREEIGRDYTEARTLKRKLNNGDWVYVSEENQLLVLSDEVARQINSSELIEEE VLNELVENKIMIKKADQRDDYKPLFVEPKNILFKSSSFLIDVNGIVAFTISIFLFVIKGS PFGSAVNVLFTNPLKFLLIAILVSIVSTTFHEFMHIIFSRNSRKINLNIVKAVATIPMTH VWTWSRFGRITAITSGMSSDAIFLLVFLIMNNKSVGVNSIAASILITRILWQFIIIQKTD INILISFVVDNPFYFEEVAIMKLIIIKVISISVLAMIIWLWFQPVINQFN >gi|307679236|gb|GL457011.1| GENE 157 153381 - 154325 265 314 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 275 1 261 311 106 27 8e-22 MNQQLELHSLSKKYKKSESCANDNINLRFNKGEITAIAGHNGAGKTTMLNQIIGITKSTK GSITFNGLSFARDSKIAREYVSMMPQLHAPLAGITMAQSVESIIRIRGGSQKIAEEECIK ILKELKIDGWKDIPGQKLSGGLRRLASFAMAVVYPSPIIVLDEPTNDVDPIRRQKIWRYL KKLSNKGHIIIVVTHNILEVEKYADRYILMNHGKVLEDKNLKKQSIKINDRNYMTVNFLN LSDLKSVIVPSAIQTNINDEELMIEMELENSQVLEAVDWVMKLVIERKIQNYKVSPKSLN ETYGELIDENDKKL >gi|307679236|gb|GL457011.1| GENE 158 154303 - 155061 335 252 aa, chain + ## HITS:1 COG:no KEGG:EF1332 NR:ns ## KEGG: EF1332 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 56 252 1 197 197 322 98.0 8e-87 MKMIKNYKRKSMIKELFALVGWSLLRHKYLLPVFTLTQVFLSLAIVYGLALLIPDVNNQT AIYLSSGATTLGIIAVGCVLAAQIVSTAKQEGIVDYQRTLPVSRLNILISDFIIWGMASL PGVFMSFLAAYLRFDVQIRFSMKALAILSLIQLCMISIGFALAYCLTPNVVGLATQIIMI GGLLFSPITYPTDRLPSALVNFFEFLPFVPSSNLIRSLFYEQNTVNVSNIIVVCFWFVLT TLLSLISLSRRD >gi|307679236|gb|GL457011.1| GENE 159 155070 - 155717 208 215 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 4 214 12 227 318 84 28 3e-15 MQTININNLYKKVSDTFNLKVDQLDLEVGKIYGLVGPNGAGKTTLMKCLCSLLRPDSGIL KIDNRQVEIADPKILLQVGTNFVNSDSLNGFMLEDIYNDHAFYYKLKNLLMIETLLMDVG LNVNKKRKFNTMSLGMKQRFLLGLATAHNPSLVLLDEPFNGLDPDGVELFIENVKTLSEN RVLIISSHILRDMETFLDDVIFIEKGNVQEPKSIG >gi|307679236|gb|GL457011.1| GENE 160 155689 - 155784 82 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYKNQNQLVEIREEYREGLKEYYDEQKRKHD >gi|307679236|gb|GL457011.1| GENE 161 156512 - 157126 252 204 aa, chain - ## HITS:1 COG:no KEGG:EF1335 NR:ns ## KEGG: EF1335 # Name: not_defined # Def: sensor histidine kinase, putative # Organism: E.faecalis # Pathway: not_defined # 1 204 233 436 436 364 99.0 1e-99 MEYRILNEIKRNRTNVLKLKHDLKNQYLTILGLIENEEVNEAIDYIKSSFDILEPPTKTY AADGVLNYLLNEKLAEARKNQINVDHQIFVSKNIKINNDVLTIVIGNIIDNAIQASKRIK PIDRYVNIIIKQVNNDLFIEVSNNYNSEEIFTRKHRKNKGLGMKNIGDLLQQLGGIQRHW TKERRYFVTIVIFNVYKGNKCGDN >gi|307679236|gb|GL457011.1| GENE 162 157108 - 157821 247 237 aa, chain - ## HITS:1 COG:no KEGG:EF1335 NR:ns ## KEGG: EF1335 # Name: not_defined # Def: sensor histidine kinase, putative # Organism: E.faecalis # Pathway: not_defined # 1 229 1 229 436 328 99.0 1e-88 MLDITLRSLSLLVYLFLISYFFSNWSTAIKSHREFYNVIWIVIIISAMVTIILSNAYIPN IYLPYLNLLLSFILTYTIAMLHSVPYLDSAVWTMTLISINLICEVLSLHFTKIILNAELT SYGSPTFFITSITITTLIGVAWIVILKFSIVKEAKSELSTNLSFIVILLPIPILSIIILF GLLIGNNNDKISEITITISVIFLNICVIFLYKITIEYQKNQYDLTLRKKISKWSIEF >gi|307679236|gb|GL457011.1| GENE 163 157821 - 158525 394 234 aa, chain - ## HITS:1 COG:CAC1581 KEGG:ns NR:ns ## COG: CAC1581 COG3279 # Protein_GI_number: 15894859 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Clostridium acetobutylicum # 1 208 2 211 234 108 30.0 6e-24 MKVAICDDNPTLTEKINTMLFNYNPNIFETYTYYNPLKLVNQLDQENFDFFILDIEMSEM SGIDLAKKIRERDILSPIVFLTSYKEYMEEVFQVQTFDYLLKPPTEDRLHQVLEKLRQQL EKKRNYFVFSSNKVTYKIPTKDIIYFEKDKRQVLIHTVGEIYKPYMSTNQINEQLDTNFV QVHSSFIINCAYIKELGKNFLLMDSKEKCIEIPISRRFKAAAHKSIVMSMRGKI >gi|307679236|gb|GL457011.1| GENE 164 159100 - 159522 274 140 aa, chain + ## HITS:1 COG:no KEGG:EF1337 NR:ns ## KEGG: EF1337 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 138 1 138 143 254 96.0 6e-67 MLQKYIEILTRDEVIFRKKPDGTEVNYFLFPEFEIHINSLPGKTVQGWHKHHEIEEVLLV QSGKVKIEEVENQQIVSRICAEGELIRMYNSLHRISNPDTLSASFTVFRFVPQGQNQQEC IKNDKEEFSDATVQRLLKNK >gi|307679236|gb|GL457011.1| GENE 165 159701 - 160615 630 304 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 1 303 1 306 306 247 43 4e-64 MYDVIIIGAGPAGMTAALYASRSNLSVLMIERGAPGGQMNNTAEVENYPGFDSIMGPELA YKMYENVEKFGTENAYGIVMGIEDHGSYKEVICDDKSYEAKAVIIATGCEHRKLGVKGEE EFAGRGVSYCAVCDGAFFKNKRLVVVGGGDSAVEEAIYLTQFASEVVIVHRRDELRAQKI IQDRAFANEKISFVWDTVVEEIVGNEMVVTGVKARNVKTDEVSEIEANGVFIYVGLDPLT EPFKKAGITNEAGWIETDQEMRTKIPGVYAIGDVREKTLRQITTAVGEGGIAGQQVFNYI EELK >gi|307679236|gb|GL457011.1| GENE 166 160658 - 161119 634 153 aa, chain - ## HITS:1 COG:no KEGG:EF1339 NR:ns ## KEGG: EF1339 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 153 1 153 153 280 98.0 1e-74 MVYTVDFKEVATIGLESSPVALALAGLRANEARYFWNKYKHRFTTVPASEAPETLAWIEK ILLERALHFFYKPLEISSFTLDGIKMAYVFYENGLAVNVMYTLAEEGKRAVGFKLSDGMA IPAEFEGKFKFARQKSKLAGTIRGSYFVIKGTY >gi|307679236|gb|GL457011.1| GENE 167 161316 - 161816 594 166 aa, chain - ## HITS:1 COG:no KEGG:EF1340 NR:ns ## KEGG: EF1340 # Name: not_defined # Def: pheromone cAM373 precursor lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 166 1 166 166 288 99.0 4e-77 MLKKPFLLFFSLLGAIFILASCGIGKDAVTDTKYKVSLQQAAEIYEKEAGNSKPLVNVQF DTEPASDYSYIFTNETETLYVNPETGKVTKNTEANQLGENETAFSAAEVKELGAVNDVLA KAKKEVGGLSPRILTWKLTKNNNKLVYTVDVKTTTADEKVTLDANK >gi|307679236|gb|GL457011.1| GENE 168 161815 - 161898 103 27 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKLPRFFLLSIHNHLVYGGFIKITNKK >gi|307679236|gb|GL457011.1| GENE 169 161935 - 164274 2643 779 aa, chain - ## HITS:1 COG:L119891_1 KEGG:ns NR:ns ## COG: L119891_1 COG1136 # Protein_GI_number: 15672696 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Lactococcus lactis # 1 287 3 289 290 232 42.0 2e-60 MLELKEIKKYYTVGGTTTKALDGVSVAFRKQEFVAILGPSGSGKTTMLNVIGGLDNYDSG DLIINGKSTKNFKEADWDAYRNNSIGFIFQSYNLISHQGILDNVELGMTLSGISKAERRQ KAEDALIRVGLKDHIHKKPSQLSGGQMQRVAIARALANDPDILLCDEPTGALDSETSLQI MALIQELSKEKLVIMVTHNPELAHEYADRIIEFSDGQIRHDSRPHIEHEKKEPFELKRTK MKFTTALRLSFNNIRTKKGRTFLTAFASSIGIISIAIVLSLSTGFQKQIDKTQSETLAQF PITISKIATDQDPESFNNQDKKGTFPKEKEVTAKISDADRAQHTNLIDQKFIDYVNHIDP ELSNNIGYTRLVNMNLLREINGKAQAVKFSNDAPDGQSNAMASMMAAQTGVGVSAFPKQL ENGKNNFLKDNYSLLEGNYPEKETDVVLIVDSNNTTNINALKNLGFDVKDNQKIAFSDIV GTKMKLANNNAFYTKLPTGNFIPNQDLQAVYDNPENTELTISGILRIKDSSTMNLLAPGI AYSDALSTNMIAKNKTSDIVKAQEASNTNVMTNETLDASAKENLLSYLGANEIPSSIMIY PNDFKSKDKILDYLDAYNKGKDKKDQIIYSDLAGTMTRLTGGLMDAITYVLIAFAGISLV TSMIMIGIITYTSVIERTKEIGILKALGARKKDITRVFDAETAILGVASGILGVVIAFLA TFPINAVLYNLTDLENVATLNPIHGIILIVISTILTMIGGHIPARMAAKKDAAVALRAE >gi|307679236|gb|GL457011.1| GENE 170 164420 - 164908 552 162 aa, chain + ## HITS:1 COG:no KEGG:EF1342 NR:ns ## KEGG: EF1342 # Name: not_defined # Def: MarR family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 162 1 162 162 252 100.0 3e-66 MDKEKHSSNLDISVFTEIFSYMSQLLFKDLDLEDLKLTKLDMLILLIVATNEGISMTELA NQVGTSKVQVSRSIAGLEERAIVQRRHNQENRRVVNVYTTKEGEKLFKQKENQVKQQLSE TLSVLSLEDYQEVNQHFLAVMKILSNYQALRRKTCKENNAKK >gi|307679236|gb|GL457011.1| GENE 171 164946 - 165809 756 287 aa, chain - ## HITS:1 COG:SPy1296 KEGG:ns NR:ns ## COG: SPy1296 COG3833 # Protein_GI_number: 15675249 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type maltose transport systems, permease component # Organism: Streptococcus pyogenes M1 GAS # 8 286 2 278 278 327 67.0 1e-89 MAKAKSYQKKQRTALTSVYIILTILAVFWMFPIVWIILTSFRGEGGAFVPYIIPKTFTLE NYKVLLTNQTGNFPFVRWFLNTLFVSIASCLLSTFITIAMAYALSRLRFRLRKPFLKVAL VLNMFPGFMSMIAVYYILKALNLTESLFALILVYSAGSALGFYIAKGFFDTIPMALDESA MIDGANKWQIFTKITLPLSKPIIVYTSLTAFMGPWMDFIFAKVIMGDKVENYTVAIGLFS MMTKSTANSLFMAFTAGCVLIAIPITILFILMQRFYVEGVTSGSVKG >gi|307679236|gb|GL457011.1| GENE 172 165813 - 167156 1035 447 aa, chain - ## HITS:1 COG:SPy1295 KEGG:ns NR:ns ## COG: SPy1295 COG1175 # Protein_GI_number: 15675248 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Streptococcus pyogenes M1 GAS # 10 447 11 450 453 541 67.0 1e-154 MFKKKKAQTSFREVFKKGDFATKLSFLVMGAANFANKQWLKGIIFLTAEIGFIYWLIRNG FHALMMLGTLGTQQQGLVYDDSLGIEVLKEGDNSMLLLLFGIAAILVCLSLIILYVINLK SARHLYELKTAGKKIPTTMDDLRSLLNERFHATLMTIPLLGVLFFTILPLLYMISIAFTN YDHNHLPPKNLFTWVGLANLGNVITGDMASTFFPVLGWTLIWAVFATATCFFFGIILALL INTKGLKYKAFWRTIFVITMAVPPFVSLLIMRNLLNGSGPINALLLNWGLIDSSIPFLTD PNWAKLTIIVVNMWIGIPATMLISTGIIQNLPEDQIEAARIDGANKWQIFKSITFPQILF VMTPALIQQFIGNINNFNVIYLLTGGGPANSNFYGAGSTDLLVTWLYKLTVDTMDYNLAS VIGILIFILSAVFSLIAYTRTNSFKEA >gi|307679236|gb|GL457011.1| GENE 173 167242 - 168492 1790 416 aa, chain - ## HITS:1 COG:L128695 KEGG:ns NR:ns ## COG: L128695 COG2182 # Protein_GI_number: 15673665 # Func_class: G Carbohydrate transport and metabolism # Function: Maltose-binding periplasmic proteins/domains # Organism: Lactococcus lactis # 4 415 3 410 410 280 41.0 3e-75 MKANWKKILMGGILLSASAVLLTACGGAEKTKAENESGSANKAAGDVKLWVDTEYMGVFK KVVADFEKENPDIKVNLTAGNSADAKKDIAKDPKAAADVFMMPHDQIGQMAEAGLIYPNT KYEKEVKENNIDSAVAGVTWKDKVYAYPYAVESQVLYYNKDTYSPEEIKTWKSLTEKGKI GTNFGEDGANYIFGPLFMSNGDYLYGENGEDPKGTNFNNQQGIEVLQWIADQKNNPGVIQ SNTEALSNLGSGKTDAFLSGPWSKNDVEKALGDKMGAAAYPTIDFGNGEKQMKAFLGVRS FAVNQQTQAPLAAMTLANYLTSEKAQMTYFKEIGFVPSNKKLQTNEEITQDTVAKAILEM AQPTHSVVMPKIPEIVSFWPAMDAVINDTYKGNIKPADYQAKLDKLVQDTSKEAKE >gi|307679236|gb|GL457011.1| GENE 174 168677 - 168751 104 24 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQSFALKCVRVLENTRKATIKGEN >gi|307679236|gb|GL457011.1| GENE 175 168752 - 170518 1653 588 aa, chain + ## HITS:1 COG:L128694 KEGG:ns NR:ns ## COG: L128694 COG0366 # Protein_GI_number: 15673664 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Lactococcus lactis # 1 587 1 584 584 711 58.0 0 MNTAAIYHRPESEFAYLYTEETMHIRLRTAKGDIASVQLVQGDPYLLGKEKWYQQSLTMK KLVSTELYDYWFIALSAKFKRLSYAFTLVGTDGLTAFYGEHGIYPLEEKYLAMANNYFRM PYFHEIDRFKAPEWVKETVWYQIFPERFANGDPANDPEGTLPWGSKRPDRQDFFGGDLQG VLDHLDYIEDLGVNGLYFCPIFEAFSNHKYDTIDYLKIDPAFGDGATFKRLVEECHRRGI KIMLDAVFNHMGDTSPQWQDVLKNGQDSIYADWFHVNEFPASYEESADFEEASNITYDTF AFTPHMPKLNTANPEVQAYLLEIARYWIEEYDIDAWRLDVANEVDHAFWKKFRQTCDDAK EDFYILGEIWHSSQSWLQGDEFHAVMNYAYTDAIMGYFVKQELSLEKMLSEMNNQLMLYR QQTNQMQFNVLDSHDTPRLLHETKEDKELMRQVLAFTYIQPGVPCLYYGDEIGMTGDMDP DCRRCMVWEENQQDLDLKEFVKSLIALRKKYAAVFSGGTIDWTGTSFETGLIRLACRLEE QTIYGIFNTGQETQFVDRTDREVLLSSFIEIASEQIMVLPKGFLLYQA >gi|307679236|gb|GL457011.1| GENE 176 170546 - 172171 1573 541 aa, chain + ## HITS:1 COG:SP0342 KEGG:ns NR:ns ## COG: SP0342 COG0366 # Protein_GI_number: 15900272 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Streptococcus pneumoniae TIGR4 # 1 539 1 534 535 687 62.0 0 MEKHWWQEVVVYQIYPRSFKDSSGDGIGDLPGIIEKLDYLETLGIGAIWLSPVYQSPNDD NGYDISDYEAIMTEFGTMADMDRLIEEAKKRKIEIIMDLVVNHTSDEHRWFIEAKKSKEN PYRDYYVWADPASDGGVPNRLKSAFSGSAWTFDEASGQYYLHLFSKKQPDLNWENQQMRQ SVYEMMNFWIDKGIGGFRLDVIDLVGKIPGEEITANGPHLHRYLQEMNAATFGGKELLTV GETWGATPEIAKMYSSPERHELSMIFQFEHMSLDQQPGKEKWDLQPMEVAKLKQVFAKWQ TELGNDGWNSLFWNNHDLPRMISRWGNDQEHWLESSKLFAILLHMMKGTPYIYQGEEIGM TNTPITDIREARDIETINMYHEYLEKGYSKEEILLKINTKGRDNARRPMQWTAEKNAGFT TGTPWIDVNPNYQTINVAAALADKNSLFYTYQEMIRLRKEHPLIVWGDFELLETVDEVIS FYRTYGEERWLVVTNFSDKVQPFSADVHVEQVMIENMPTDVTALADYSLAPWQAFVVKVS Q >gi|307679236|gb|GL457011.1| GENE 177 172173 - 173786 1557 537 aa, chain + ## HITS:1 COG:L128691 KEGG:ns NR:ns ## COG: L128691 COG0366 # Protein_GI_number: 15673660 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Lactococcus lactis # 9 537 13 544 545 612 57.0 1e-175 MEQWWKNAVGYQIYPRSFKDSNGDGIGDLQGIIEKLPYLKELGVDFLWLNPIYTSPNVDN GYDIADYQGIQPEFGTMEDFQELLDQAHQLGLKIILDLVVNHTSDQHPWFVEAKKSLDNP YREYYLWADATPDRMPNEWQSFFGGSTWTYDAGTKQAYFHVFAKEQPDLNWKNPKVREEI YAMIRWWLDLGIDGFRLDAISHIQKELWDFKITTNPWAPFMNVKGIEDYMLDLKAIFAEY DIMTVGEASGVSSKKAVEWTNDAGYLNMIFELEHNVREGKPGEERLNILGYKKVMARWQK HLGTEGWNALYVENHDNPRINSILGNETSHSAKAIGTIALLLRGTPFIYQGQEIGMVNYP FQQIDELDAKDSHNHYRLLIESGYDAKQALKEVAHWTRDHSRTPMQWTSQEASSFTSGHP WLAIHPNFKEINVADQETDAQSVLNYYKKLIALRKDNPVFTDGQFELLAPNHPSVFAFLR KTTEATALVIVNLSGEKCQFDLSNKLLGRKWQQLLGNQDFTVKKRMQLAPYQAGVFQ >gi|307679236|gb|GL457011.1| GENE 178 173957 - 174538 685 193 aa, chain + ## HITS:1 COG:L85237 KEGG:ns NR:ns ## COG: L85237 COG3548 # Protein_GI_number: 15672844 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Lactococcus lactis # 1 187 1 184 188 129 38.0 3e-30 MPKTRVEAFTDAVIAIILTLLILELKIPEKADWSALTQSGHKIIIYLISFVTLLIYWNNH HHLFQSVRKIDGRVLWMNNFLILTLTFFPFVTGWVGEHPFSWPPQALYGLLVLGADVAYY LVVRALIQANGPKSEVQRLFGHYPKLTLSIVLNIIALIVGKLVAPIAVLIIDTIVLVMWF IPERKAEIKGILK >gi|307679236|gb|GL457011.1| GENE 179 175014 - 177623 2844 869 aa, chain + ## HITS:1 COG:lin2836 KEGG:ns NR:ns ## COG: lin2836 COG0474 # Protein_GI_number: 16801896 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Listeria innocua # 17 869 13 856 856 897 54.0 0 MNKKTMDMRKATKDQELRKLALLSERELMMELRTSEKGLSNEDAEKRLEEFGPNEVSAQK PTPAIILFLSAFKDPFVYVLALLMVVSTLTKDFEAAIVMGVMILASVLIAFIQEYRSQKA SLDLKELIENTAAVTREGITKEIPMDEIVPGDIVTLATGDMIPADAVLIWTKDLFVNQSS LTGESMPVEKFVDAGVDRQQTEVSALDMQDLVFMGTDVLSGQGKAIILKTGQHTFFGDIA KNATTQRGKTSFDLGLAKVSKFLLRMVMILFPIVFLINGLTKGAWGEAFFFAIAVAVGLT PEMLPMIVTSNLAKGALSLSKHKVIVKELAAIQNLGGMDVLCTDKTGTITEDRVVLVQHL NPLGDLSDEVLNLAYLNSSYQTGWKNLMDIAVINFYEEHQWKTPFKNVTKIDEIPFDFSR RRLTVVVNADDHQLMITKGAVEEMEEVCTHAQINGEIVPLSTAVREELRRVNVQMNKQGM RVLAVAVKKDVHKEAVYSVEDEKEMTLIGFMGFLDPAKESAVSAIRSLHEHGVNVKVLTG DNDIVAKKVCKDVGIEVSHVLLGSQIEAMTDEELRAQVEETNLFAKLNPMQKSKIIELLQ AKGHTVGFMGDGINDAPALRKADVGISVDTAADITKDASSIILLEKSLNVLESGVIEGRK VFSNMMKYIKITISSNFGNVFSILVASAFLPFLPMLSLQLLIQNLIYDVAQLTIPWDNVD EEELLSPVRWETNGLAKFTVCIGPVSSIFDILTYLVMWFVFSANSLATQHLFQTGWFMVG LVSQTLVVHMVRTRKIPFIQSRASMPVMLSSLGAILLGFLIVATPIREVFDFVKLPANYW PWFFGIIIAYMLTVEVAKRLYIKITKEWI >gi|307679236|gb|GL457011.1| GENE 180 178222 - 179337 1689 371 aa, chain + ## HITS:1 COG:lin1044 KEGG:ns NR:ns ## COG: lin1044 COG1071 # Protein_GI_number: 16800113 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit # Organism: Listeria innocua # 1 371 1 371 371 527 70.0 1e-149 MAKAKKQKPIDFKELMAKVDADFPTFQILDQDGKIVNEDLVPDLSDEELVELMTRMVWSR VLDQRSTALNRQGRLGFFAPTAGQEASQLASQFAMEKEDYLLPGYRDVPQLVQHGLPLRE AFLWSRGHVAGNYYAEDLNALPPQIIIGAQYIQAAGVALGLKKRGKENVVFTYTGDGGSS QGDFYEAINFAGAYQANGVFIIQNNGFAISTPREKQTAAKTLAQKAVAAGIPGIQVDGMD PLAVYAIAKEARDWSAAGNGPVLIETLTYRYGPHTLSGDDPTRYRSKEMDDEWVQKDPLT RFRKYLTDKGLWSEAKEEEIIEKTKEEIKVAIAEADKAPKQKVSDFLKNMFEVQPQTIKE QIAFYEAKESK >gi|307679236|gb|GL457011.1| GENE 181 179340 - 180317 1297 325 aa, chain + ## HITS:1 COG:lin1045 KEGG:ns NR:ns ## COG: lin1045 COG0022 # Protein_GI_number: 16800114 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit # Organism: Listeria innocua # 1 325 1 325 325 498 76.0 1e-141 MAQKTMIQAITDALALELEKDENVLIFGEDVGNNGGVFRATEGLQEKFGEDRVFDTPLAE SGIGGLAFGLALQGYRPVPEIQFFGFVFEVFDEIVGQMARTRYRMGGTRNMPITVRAPFG GGVHTPELHSDNLEGLIAQSPGVRVVIPSNPYDAKGLLISSIRSNDPVVYLEHMKLYRSF REEVPDEAYEVPLDKAAVTREGTDVSIITYGAMVREAIKAADSLAKDNISAEIIDLRTVA PLDVETIINSVEKTGRVVVVQEAQKQAGVGAMVVSEISERAVLSLEAPIGRVSAPDTIFP FGQAENIWLPNAKDIEAKAREIVEF >gi|307679236|gb|GL457011.1| GENE 182 180460 - 182079 2108 539 aa, chain + ## HITS:1 COG:lin1046 KEGG:ns NR:ns ## COG: lin1046 COG0508 # Protein_GI_number: 16800115 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Listeria innocua # 1 538 1 543 544 580 62.0 1e-165 MAYQFKLPDIGEGIAEGEIVKWFVKPGDTINEDDTLLEVQNDKSVEEIPSPVTGTVKNIV VPEGTVANVGDVLIEIDAPGHEDNDAAPAAPAQEQTPAQPAAVPTTEAAGGFFQFKLPDI GEGIAEGEIVKWFVKAGDTINEDDSLLEVQNDKSVEEIPSPVTGTVKNIVVPEGTVANVG DVLVEIDAPGHNSAAPAAAAPATDAPKAEASAPAASTGVVAAADPNKRVLAMPSVRQYAR EKDVDITQVTATGKGGRVIKADIDAFVSGGSQAAPATEAAATEAAPKAEAAAPKAAPKAF TSDLGEMETREKMTPTRKAIAKAMVNSKHTAPHVTLHDEVEVSKLWDHRKKFKDVAAANG TKLTFLPYVVKALTSTVQKFPILNASIDDAAQEIVYKNYFNIGIATDTDHGLYVPNVKNA NTKSMFAIADEINEKAALAIEGKLTAQDMRDGTITISNIGSVGGGWFTPVINYPEVAILG VGTIAQEPVVNADGEIVVGRMMKLSLSFDHRIVDGATAQKAMNNIKRLLADPELLLMEG >gi|307679236|gb|GL457011.1| GENE 183 182087 - 183493 788 468 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 11 468 5 458 458 308 36 2e-82 MVVGDFAIELDTVVIGAGPGGYVAAIRAAEMGQKVAIIEREYIGGVCLNVGCIPSKALIA AGHHYQEAQDSSTFGVTAKGVELDFAKTQDWKDNTVVKSLTSGVGMLLKKHKVEIIEGEA FFVDENTLRVIHPDSAQTYSFNNAIVATGSRPIEIPGFKFGGRVLDSTGGLNLKEVPKKF VIIGGGVIGAELGGAYANLGSEVTILEGSPSILPTYEKDMVKVVTDDFKKKNVTIVTSAM AKEAVDNGDSVTVKYEVNGKEESVEADYVMVTVGRRPNTDDLGLEQAGVEIGERGLIPVD NQGRTNVKNIFAIGDIVPGAALAHKASYEAKIAAEAISGKKVAVDYKAMPAVAFTDPELA SVGMTVAEAKEAGIEAKGYKFPFAGNGRAISLDKTEGFMRLVTTVEDNVIIGAQIAGVGA SDMISELALAIESGMNAEDIALTIHPHPSLGEITMDTAELALGLPIHI >gi|307679236|gb|GL457011.1| GENE 184 183607 - 184593 933 328 aa, chain - ## HITS:1 COG:lin1114_1 KEGG:ns NR:ns ## COG: lin1114_1 COG4936 # Protein_GI_number: 16800183 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Predicted sensor domain # Organism: Listeria innocua # 15 117 13 115 149 105 41.0 1e-22 MTVELKNILDLEKWEKLQESLALSTRLAIILVDYKGRPVTKHSQVQPFCQLVRHSPELSK LCEKCDARGGLEAVRTGQPFTYRCHFNIVDMAIPIIVDDQYVGAIMAGEVLLEDHQEELE QVLTMNDAFIQEFLVTHQELYQQYPVLELADLEKSATLIADLSQYIISEAIKKDYLINTY KQSLQISSRKEELEPLNMIQKDIQQTLLTAQLTPSSAYQTKNKQLQPVLDALWENKSLRL NLQELADLVHLTPTYLSRLLKEEFGIPFSQFYRQLKITWAKQLLLETDKTIAQISEDLGF VEDSYFVRIFKQETGETPLKYRKRKNRA >gi|307679236|gb|GL457011.1| GENE 185 184754 - 185893 1432 379 aa, chain + ## HITS:1 COG:gldA KEGG:ns NR:ns ## COG: gldA COG0371 # Protein_GI_number: 16131783 # Func_class: C Energy production and conversion # Function: Glycerol dehydrogenase and related enzymes # Organism: Escherichia coli K12 # 1 372 14 375 380 283 42.0 5e-76 MRKALILPTKYVQGEDELLNLGYFVSTFGKKALLIANPADVDRVRPQLEETAKKFDITFV EGGFSGEVTREETKRLQNVGQKEQADCIIGLGGGKAIDASKVVAEGENLIIVPTIAAQDA PTSHSAVLYHEDGSFDDYAYFKQSPSVVMVDTKVVAKAPTRFLVAGMGDALSTYFEARAT HNSYSRVNASLPMGSREGLTPAASGTYAALAMAKLCWENLQEDGLKAKLACDANVVTESL NKIIETNILLSGLGFESGGLAAAHAIHNGMTVLPGAHSYLHGEKVAFATIAQLVLEDAAK DELEAVLDFSASVGLPLTLSDIGVDEITYEEALEVAKIACIPEESIHSMPFPIVVEEVAN AIIVADKVGQEYKTRHKLD >gi|307679236|gb|GL457011.1| GENE 186 185906 - 186304 552 132 aa, chain + ## HITS:1 COG:DRB0052 KEGG:ns NR:ns ## COG: DRB0052 COG3412 # Protein_GI_number: 10957457 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Deinococcus radiodurans # 1 127 1 127 133 85 41.0 3e-17 MKADILLVSHSKMITDGIKEMIEQMNASEEITIHSLGGTSDGSLGSDPMKIIDTINEADS DREFLIFADLGSAVLSSELAFDMLEEDQQKHYHLVDAPLVEGAFAAAITAGVSDDLTQIL AEAQNAGKKGWN >gi|307679236|gb|GL457011.1| GENE 187 186305 - 187288 1369 327 aa, chain + ## HITS:1 COG:L45677 KEGG:ns NR:ns ## COG: L45677 COG2376 # Protein_GI_number: 15672230 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Lactococcus lactis # 15 327 1 315 316 381 62.0 1e-105 MKKIINEPGKIVEEMLQGIVKSYGNLVHQVEDSRVIARNDSNKQVGLVSGGGSGHEPAHA GFVGDGMLNAAVLGDVFTSPTPDQILTGIQAADQGAGVLLIVKNYTGDILNFEMAKDMAD MEDIHVEMVVVDDDIAVEDSTYTAGKRGVAGTVLVHKILGHHARQGASLEELVSLGEKIV AATKTIGVALKAATVPEVGKPGFTLPEDEIEFGVGIHGEPGYRREKIQPSKELAKELVEK TLSSYEQQPQTVGVLVNGMGGTPLMEQFVFMNDVLTLLEDKGVQVTFHKVGNYMTSIDMQ GLSLTMIDLATKDWQTALESNVTTISW >gi|307679236|gb|GL457011.1| GENE 188 187301 - 187903 889 200 aa, chain + ## HITS:1 COG:lin2844 KEGG:ns NR:ns ## COG: lin2844 COG2376 # Protein_GI_number: 16801904 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Listeria innocua # 11 196 11 194 198 194 53.0 9e-50 MELTVKDIQTWLDNYSKVIEEKKDYLSELDTPIGDGDHGNNMARGMAEYKIAFDKKVPTT ITETFKVLSMALISKVGGASGPLYGTAFMNMTKATKDLETISSPEQLKEIVQQGLAGIQM RGKAEPGDKTMVDVWAPVAEVIGTEQFNEEKIEQFAEATKDWVAKKGRASYLGERAIGHI DPGAASSALLFEELVKVINQ >gi|307679236|gb|GL457011.1| GENE 189 188042 - 188809 867 255 aa, chain + ## HITS:1 COG:no KEGG:EF1362 NR:ns ## KEGG: EF1362 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 255 1 255 255 438 99.0 1e-122 MKKHVIVGCLLIVSSMFVSACGNSSDVTTEKTSVTKQVEATGQSTSSSVDQTKYDAIITE AKKLTAEGQYKESEEKLATIPVSDLGKPHYSIVKETVEKLNNQNNEGLKRQEEVAVEKQT KSSPAPTGSLKPIPDEFAKWATTYLFYYPRGDQKQAGLIIEANGAVTQTNTNGEIYTGKA EISGASGTILSYDTTSYRPTTQPATKSITPNVKITVTWNNGGGVDVYYGYVSYSQRLALT DGIAVTDGVKEVWLS >gi|307679236|gb|GL457011.1| GENE 190 188882 - 190033 1353 383 aa, chain - ## HITS:1 COG:L13187 KEGG:ns NR:ns ## COG: L13187 COG3425 # Protein_GI_number: 15673554 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxy-3-methylglutaryl CoA synthase # Organism: Lactococcus lactis # 1 382 1 382 384 497 65.0 1e-140 MTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAE AILTKEDKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARSFEIKEACYGATAGLQL AKNHVALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVASEPRILALKEDNVMLTQ DIYDFWRPTGHPYPMVDGPLSNETYIQSFAQVWDEHKKRTGLDFADYDALAFHIPYTKMG KKALLAKISDQTEAEQERILARYEESIVYSRRVGNLYTGSLYLGLISLLENATTLTAGNQ IGLFSYGSGAVAEFFTGELVAGYQNHLQKETHLALLDNRTELSIAEYEAMFAETLDTDID QTLEDELKYSISAINNTVRSYRN >gi|307679236|gb|GL457011.1| GENE 191 190219 - 192630 2723 803 aa, chain + ## HITS:1 COG:L10433 KEGG:ns NR:ns ## COG: L10433 COG1257 # Protein_GI_number: 15673552 # Func_class: I Lipid transport and metabolism # Function: Hydroxymethylglutaryl-CoA reductase # Organism: Lactococcus lactis # 393 801 4 409 410 490 62.0 1e-138 MKTVVIIDALRTPIGKYKGSLSQVSAVDLGTHVTTQLLKRHSTISEEIDQVIFGNVLQAG NGQNPARQIAINSGLSHEIPAMTVNEVCGSGMKAVILAKQLIQLGEAEVLIAGGIENMSQ APKLQRFNYETESYDAPFSSMMYDGLTDAFSGQAMGLTAENVAEKYHVTREEQDQFSVHS QLKAAQAQAEGIFADEIAPLEVSGTLVEKDEGIRPNSSVEKLGTLKTVFKEDGTVTAGNA STINDGASALIIASQEYAEAHGLPYLAIIRDSVEVGIDPAYMGISPIKAIQKLLARNQLT TEEIDLYEINEAFAATSIVVQRELALPEEKVNIYGGGISLGHAIGATGARLLTSLSYQLN QKEKKYGVASLCIGGGLGLAMLLERPQQKKNSRFYQMSPEERLASLLNEGQISADTKKEF ENTALSSQIANHMIENQISETEVPMGVGLHLTVDETDYLVPMATEEPSVIAALSNGAKIA QGFKTVNQQRLMRGQIVFYDVADPESLIDKLQVREAEIFQQAELSYPSIVKRGGGLRDLQ YRAFDESFISVDFLVDVKDAMGANIVNAMLEGVVELFREWFAEQKILFSILSNYATESVV TMKTAIPVSRLSKGSNGREIAEKIVLASRYASLDPYRAVTHNKGIMNGIEAVVLATGNDT RAVSASCHAFAVKEGRYQGLTSWTLDGEQLIGEISVPLALATVGGATKVLPKSQAAADLL AVTDAKELSRVVAAVGLAQNLAALRALVSEGIQKGHMALQARSLAMTVGATGKEVEAVAQ QLKRQKTMNQDRALAILNDLRKQ >gi|307679236|gb|GL457011.1| GENE 192 192650 - 193702 940 350 aa, chain - ## HITS:1 COG:lin0948 KEGG:ns NR:ns ## COG: lin0948 COG0628 # Protein_GI_number: 16800017 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Listeria innocua # 1 332 1 330 348 277 50.0 3e-74 MSLYQKFIQNERLRRFCVLALIIFVLYLSRSMITTILLTFIFTYLAVRLVHFVQRYMKIP TIVIVLLTYALVVFLIYLAITKYVPVLVNQTTQMINSVVDFYQSPHTDTNQVLQFIDQYL EKSNLLSQLQNGASMILRYIQDIGAVGLSFVMSFILSFFFMIEKKQMADFSKLFLKSDFD WFFQDIYYFANKFVNTFGVVMEAQFFIAVVNTVITTLALAIIGFTQLPSLAIMIFILSLV PVAGVIISCIPLSFIAYSQGGLNDVIYILALITIVHLFESYVLNPKFMSSKTELPIFYTF VILLVSERLFGVWGLIVGIPVFTFFLDVLKVKPIRGLKRLPNVKKNSSAE >gi|307679236|gb|GL457011.1| GENE 193 193719 - 194924 996 401 aa, chain - ## HITS:1 COG:lin1003 KEGG:ns NR:ns ## COG: lin1003 COG1434 # Protein_GI_number: 16800072 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 66 401 10 344 344 205 40.0 1e-52 MQFYGDLTFLGVYLLGLFFIPSWRKKKKEHDWLPWMFGWTVFMFFSYVLYLEIIRGTAFF LIPIAFFGLFALFYFKEKRRLLNGTLFNIFLVVLATYLGITAIRTNNYFLITLAIIALLA IFIALALGLYALIIFLYWNAVVVMRKEGRSLGNLLTLLLAIGLTLLLIYNFFFQSLLPTW LSLPLTIAPFILTYFAFVFYNFLTVSTLYQFNQPKYTQDYIVVLGSGLINGEIVPPLLQA RINKAIQFYKAQNRATLNPPKIVMSGGQGPDELLPESVAMKMYALTQGIPDDDILVEAHS KNTLENMRFSKETMIEDFGNANFQAIFTTNNYHLFRAGLFARMAGLKADGIGAKTAFYFL SNAFIREFIAIVVMYKRRHIIVCGLAAIGMVMLFLTGLIIQ >gi|307679236|gb|GL457011.1| GENE 194 195080 - 195280 337 66 aa, chain - ## HITS:1 COG:lin1401 KEGG:ns NR:ns ## COG: lin1401 COG1278 # Protein_GI_number: 16800469 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Listeria innocua # 1 66 1 66 66 98 81.0 3e-21 METGTVKWFNSDKGFGFITAENGNDVFVHFSAIQGDGFKTLEEGQAVTFEIEEGQRGPQA TNVTKA >gi|307679236|gb|GL457011.1| GENE 195 195578 - 196699 1170 373 aa, chain - ## HITS:1 COG:no KEGG:EF1368 NR:ns ## KEGG: EF1368 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 373 1 373 373 709 100.0 0 MANQKKDSLSTLFSEEVHGPFVTFLFNTHVAHQNVEKDSLVLKNFAKAAKTRFEKKFPEE KWSVFQEKIDALLADASFWRNGTASVSIILSPENTFVQRLDVPVDDQYYVDTIPYLLGLV KDKQFNYHYYLLALNRDSMKLYKVDHTTVTPVELPKDAPTDVVTALGDELTGGNLNFSTQ GSSNGSKEGVAYHSINTKDKEVEIDWVNYYQAVDTFLKDQLDNPEKLPLYLYALPENQTL FKKIAKNPYYDCSISVAASPAQATIQDIRSASEKIAAELTEKETASYNKLLDRKFLDQFT DISPAAADGKISHLFIATSLFVTENNEMSSEEYDRRKLLNTIAYQVIQNGGQVFVLDQKA APDEKSLAAILRY >gi|307679236|gb|GL457011.1| GENE 196 196924 - 197691 283 255 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315145677|gb|EFT89693.1| ## NR: gi|315145677|gb|EFT89693.1| hypothetical protein HMPREF9495_00636 [Enterococcus faecalis TX2141] # 1 255 34 288 288 366 100.0 1e-100 MGVIQYLNLVFSSPQLMQIILILISFQIAYLFNLDYKKHNFIWYCVSPNSYVRTYYTKLF AIVLSLFANLLSAFLLVLAFVFLKNGLGVFNYPIATSSKNTEVSLIATNDFVVKTIFFFI LFLVFLALLSLVFSILTSNLILNLSVLIIPLVIGQYDVLNTLLNENLKPYILLSYLDMPH ILLGGDIMRPLRNPLLTYQNGILITLLTILVLVIISLTILLCPSQKLIAKKLEPKQKKPP RPSSVVEMKVVIYSW >gi|307679236|gb|GL457011.1| GENE 197 197811 - 198122 250 103 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312900631|ref|ZP_07759928.1| ## NR: gi|312900631|ref|ZP_07759928.1| hypothetical protein HMPREF9510_01429 [Enterococcus faecalis TX0470] hypothetical protein HMPREF9510_01429 [Enterococcus faecalis TX0470] # 1 102 1 102 378 187 100.0 2e-46 MIKFELIKIFREKTTYFLFALFVLVISVPFFLGNANFNYVKYYEDNYYAGITTIESIKDD PTATKIVEDIKETNGYLKKLIDSLKKGDQKAIVENEYNLEKKR >gi|307679236|gb|GL457011.1| GENE 198 198123 - 198818 174 231 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 4 222 11 239 318 71 26 3e-11 MNNSIEITKICVALNNKNILNNLSLTLSTGSITCVVAPNGTGKTTFFKSIVQLIPLESGE VIVDKTSIKNRTDYNKKIFFIESANQLFANLTVYENMQVAAKLWKHDANFESITNLVGVN TYINKKIKHLSAGMKQKALLSVAIASGASFLIFDEPLNGLDIENVEYLTTVFLTLKEQGK TLLLSSHNIFEISKLCDAIYFLDSGILKSASLDYLQLKEEYYELYATKGRA >gi|307679236|gb|GL457011.1| GENE 199 198944 - 199330 312 128 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|312900633|ref|ZP_07759930.1| ## NR: gi|312900633|ref|ZP_07759930.1| conserved domain protein [Enterococcus faecalis TX0470] conserved domain protein [Enterococcus faecalis TX0470] conserved domain protein [Enterococcus faecalis TX2141] conserved domain protein [Enterococcus faecalis TX0645] # 1 128 1 128 128 236 100.0 4e-61 MLGVETMEKKVVYGCVLTNLLGVSLVFNSPVEAEEVVQNDALVELQNEIGSQSVNPRNRA YVGWVVRYFHQYQTRATGNWAPNLHGYVYGKINVRNGYSANGWTYLGTTNNSNWFTIEHK FRQNYRVW >gi|307679236|gb|GL457011.1| GENE 200 199491 - 199841 403 116 aa, chain - ## HITS:1 COG:lin2607 KEGG:ns NR:ns ## COG: lin2607 COG1396 # Protein_GI_number: 16801669 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 1 100 1 97 107 67 37.0 6e-12 MTLISRIKQLAQSRQLTLAQLERNVGISNGQIRRWDTSSPKVENLLKIADYFSVSLDYLM GRTQQTEINHQAPMTSTQKELHIHITTEELTEEEITQLEEEANRFLRFRKFEMTNS >gi|307679236|gb|GL457011.1| GENE 201 200033 - 201466 1400 477 aa, chain + ## HITS:1 COG:CAC3668 KEGG:ns NR:ns ## COG: CAC3668 COG0477 # Protein_GI_number: 15896900 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Clostridium acetobutylicum # 11 472 6 467 486 370 44.0 1e-102 MEKIKSYQEDSEVQKNRWWILVSVAMFTFMSTLDSSIVNIALPTISKEMSVPMNQAEWVV SIYLMVVCACLLLFGKIGDSFGKIKVYRIGTVIFTIGSLLCGFNQSLSFLLFARVVQSIG ASMTMATNSGIITEVFPLNERGRALGAVGAFVSLGAIAGPGIGGLILSNFSWSYIFWINV PVGLVTILIGEKFLPKDITKTKEKIDFSGFACIAIAIMTFFGGIFLGQESGFGSLQSYLL FIIAIIALGLFIMVERKRKSPLIKFAIFKNKIFTLSLLSAVLIFASNFFVNVVIPFYLQD ARKLSASYAGLLMMVFPLLMVVGAPLSGYLTDKIGPGILTFGGLLLLCCTSLMYMFLDMN SPIWYYVIATAIMGLGNALFQSPNNTMVMSSVEKQDLGVAGSMNSFARNLGMVIGIALST TILYRGMSEAYGERVTTYLANRPDIFIVGMRETFFVAFLLCVAAFILTILRFRKTTK >gi|307679236|gb|GL457011.1| GENE 202 201671 - 202345 792 224 aa, chain + ## HITS:1 COG:BH3178 KEGG:ns NR:ns ## COG: BH3178 COG2220 # Protein_GI_number: 15615740 # Func_class: R General function prediction only # Function: Predicted Zn-dependent hydrolases of the beta-lactamase fold # Organism: Bacillus halodurans # 1 222 1 224 226 224 52.0 1e-58 MELIGHGHSCIEIRLNDGTNLLFDPFINGNPLADVSLEDLHPDYILITHGHSDHIGDMLA IAQANKATIIAIAEVATYAQSQGVKAHGMNLGGRYVFPFGSVKFVPALHSSGYEIDGVMT YMGEASGIILEAEDKKIYHAGDTALFSDMHLFAKDKSIDVAFLPIGDNYTMGPEDALEAV SYLNPEITIPIHYNTFPVIQQNPAIFVEQVVGGKVLNPGETILV >gi|307679236|gb|GL457011.1| GENE 203 202355 - 203674 1391 439 aa, chain + ## HITS:1 COG:lin1611 KEGG:ns NR:ns ## COG: lin1611 COG4109 # Protein_GI_number: 16800679 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing CBS domains # Organism: Listeria innocua # 1 438 1 437 437 488 57.0 1e-137 MATKHDQILKHIEELPIGDRISVRSIAKSLSVSEGTAYRAIKDAENIGLVSTIQRVGTIR IERKLKKHIEKLTFGEVVRIIEGDVLGGSSGLDKVLNKFVIGAMTETAMTRYITPGSLMI VGNRQGVQKLALENGAAVLITGGFETSEEIAQLADRLGMPVLRTTYDTFTVATMINRALS DQLIKKDILLVSDIYTALEKTNYLLTTQTIADYQALSESTHHSRFPVVNKKLRLVGIVTA KDVIGKSEHLTVDKVMTKDPNVVKKMMSVASVSHQMIWDGLEVMPVVEDDLALVGIVSRQ DVMKAMQLVQRQPQIADTISDQISGEVMPVEENGKETTRFRFSVAPQMVNSVGTISFGVL SEIISNVTQRTMLMNQKRNVLIEQVNLHYLRLIQLESELDIRPRILEIGRRSAKLDIEVY LENVIVAKAIVVCQVMERT >gi|307679236|gb|GL457011.1| GENE 204 203688 - 204641 926 317 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B [Streptococcus pneumoniae SP18-BS74] # 1 308 1 306 311 361 59 2e-98 MDVVKEIMAAIKQYETIIIHRHQRPDPDAIGSQVGLAELLRASFPEKNIYQVGGPVEGLE FLAEMDVITDDVYRGALVIVTDTANAPRISDARFSLGDQLIKIDHHPNDEPYGDLVWVNT NASSCSEIIVDFWQQHLAELTMTDNAARLLYAGIVGDTGRFLYPSTSAHTLAVAAQLRTF NFNAADLNRELDQMPLKVAKLAGYIYQNLEIDANGAARVVLPQSILNSYDIVDSETAAIV SMPGKIEDVLSWAIFVEQPEGYYRVRLRSKGPIINTIAKKHHGGGHPLASGANARDAAEI EVIYQEIQAACQKWAQK >gi|307679236|gb|GL457011.1| GENE 205 204755 - 205093 435 112 aa, chain + ## HITS:1 COG:lin0389 KEGG:ns NR:ns ## COG: lin0389 COG2824 # Protein_GI_number: 16799466 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism # Organism: Listeria innocua # 4 111 3 110 111 174 81.0 3e-44 MTEQLPNCPECGSAYAYEDRGLFICPECGHEWSPTEEVAEEGLVVKDSNGNLLADGDSVT VIKDLKVKGASGAIKQGTKVKNIRLVEGDHNIDCKVDGFGPMKLKSEFVKKN >gi|307679236|gb|GL457011.1| GENE 206 205154 - 205465 366 103 aa, chain - ## HITS:1 COG:no KEGG:EF1375 NR:ns ## KEGG: EF1375 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 103 1 103 103 157 100.0 1e-37 MLQPYFAFGVPLFLLVLYLLFALIHRQTTIHYLRFILLLISTFLMVFSFQVLQESWTINP ETLKDAAYSPQWLWIPLGIGLILTLYNAWHGLRTMIKYKTDKH >gi|307679236|gb|GL457011.1| GENE 207 205608 - 206789 804 393 aa, chain + ## HITS:1 COG:L188881 KEGG:ns NR:ns ## COG: L188881 COG4767 # Protein_GI_number: 15673730 # Func_class: V Defense mechanisms # Function: Glycopeptide antibiotics resistance protein # Organism: Lactococcus lactis # 1 241 1 236 354 167 43.0 4e-41 MAVYSEPIKWAIIIFPFLAFFISGALLIYEYRKYGSFVWTRAMILYSFVFYLLCAYFLVI LPLPSRAEVAQYTGPTMELRPFHFISGILNETVFSLKDPSTYLPALKQHAVLEPLFNVLL VLPFGVYLRYYFKCSFLKTVLASFLLSLFFELTQLSGLYFIYPRSYRLADVNDLINNTVG GIVGYWLTPLFTFLLPTREEIDATSYEKGQTVSLLRRFFAWGIDWLVIGFVQGLLVFGLN FIPAYKNWATNYPIFSDRMWFFIMVFAVFIVMMKLTNGQTLGKKVVRIRVVETGHEKIRL KALFVRYGYLYFVYGLISIYLANATDLLNSSNRMLQMVSLLLYLFCLILYLLFLINVLLT LIRKKRRLFYEKASHTYTVSTLEVAKTKESAGE >gi|307679236|gb|GL457011.1| GENE 208 206852 - 208201 1516 449 aa, chain + ## HITS:1 COG:L0340 KEGG:ns NR:ns ## COG: L0340 COG0513 # Protein_GI_number: 15672392 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Lactococcus lactis # 4 447 3 445 446 554 62.0 1e-157 MPSFKQFQFQPFINEALAEKGFEEPTEVQEKLIPIIKKGKSVIGQSQTGSGKTHTFLLPL MDKVKPTIDEVQIVITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQLNKLK HQQPHVVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLPEKLQ MLVFSATIPEKLRPFLKKYLENPVIEHIKPKAVISETIDNWLISTKGKNSNQIIYQLLTI GHPYLAIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQYVVAT DLAARGIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAITLYSPADDEAITQIEQ LGVSFKPKEIKNGEIVETYDRNRRTKREKSREELDPTLIGLVKKKKKKIKPGYKKKINWA IEDSNKKKRKIERRQKDRSARKAKKNSSN >gi|307679236|gb|GL457011.1| GENE 209 208749 - 209429 463 226 aa, chain + ## HITS:1 COG:no KEGG:EF1378 NR:ns ## KEGG: EF1378 # Name: not_defined # Def: transcriptional regulator, putative # Organism: E.faecalis # Pathway: not_defined # 1 226 1 226 227 386 96.0 1e-106 MRRILVLTKNILVEQTFQQQLQYLNYEVFCTNCFEETVEHELTFFNYFDAIVLSETLSQN DCLRLLGSLSSLEKPIYRRSQSMCNKREAEIWQERGIIRWLGLKDSLEEIREKIDTVDQS FAEATAELLDDQVKKIRFTKNEQRFLKILYQHAHEGLDRDQICRLLWQKEPDASTKSQLS FVCKRVKQKFSDAGMNEEIITTSWGKGYQINEKILPYLEQTLFETA >gi|307679236|gb|GL457011.1| GENE 210 209778 - 212420 3521 880 aa, chain + ## HITS:1 COG:lin1539 KEGG:ns NR:ns ## COG: lin1539 COG0013 # Protein_GI_number: 16800607 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Alanyl-tRNA synthetase # Organism: Listeria innocua # 1 877 1 874 879 1130 65.0 0 MKELTSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN PRITNAQKSIRTNDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAF DPEKLYVTVYPKDTEAKRIWRDEVGLSEDHIIDVEDNFWDIGAGPSGPDTEIFYDRGEEF LDIPEDDPENYPGGENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERVVSIIQ DAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGALPSNE GRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKVVRTEE ERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDEGLKVD HAGFETEMEAQRERARSARSKETSMGVQSALLTDIKVESKFVGYTELTHDSELFVIIQGD ALVNEASAGTAELIFAETPFYAEMGGQIADRGYVKNTAGEVVANVVDVKKAPNGQFLHKV EVLAPLAEGQIYQLQVDERMRTRILKNHTATHLLHRALKDVLGEHANQAGSLVAPGHLRF DFTHFGQVTSEELARMEAIVNEKIWEAIPVVTIETDIDTAKNMGAMALFGEKYGKEVRVV NIGDYSIELCGGTHVANTEDIGIFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKE IATLVKSPQLKEVVTKTEQLQQQLRDLQKENEQLAGKLANQQAGDIFKDVKDINGVRYIA AQVNVKDMNQLRQLADQWKQKELSDVLVLATAQDEKVSLLAAMTKDMNGKGLKAGDLIKA IAPKVGGGGGGRPDMAQAGGKNPEGIADALAEVENWLANA >gi|307679236|gb|GL457011.1| GENE 211 212623 - 213339 891 238 aa, chain + ## HITS:1 COG:lin1490 KEGG:ns NR:ns ## COG: lin1490 COG2384 # Protein_GI_number: 16800558 # Func_class: R General function prediction only # Function: Predicted SAM-dependent methyltransferase # Organism: Listeria innocua # 1 232 1 233 234 201 48.0 1e-51 MNENQLSKRLATVGDLIPRGSRLADIGSDHAYLPVALMLENKLSFAVAGEVVEGPYQSAK TQVSKSNLTDKIIVRLANGLDAIEPEDQIDVISICGMGGTLIRDILEAGRKKNRLTGKER LVLQPNIGEPTLRRWLMANDYSIIDETIVEENRKLYEIIVAEKTEQSVSYTDQELLFGPV LIKKQGPVFTKKWQRELKQRKTVLAQLAKASGEHIEKQAKLQQDQQLIEEVLANGCER >gi|307679236|gb|GL457011.1| GENE 212 213323 - 214441 1399 372 aa, chain + ## HITS:1 COG:SP1609 KEGG:ns NR:ns ## COG: SP1609 COG0327 # Protein_GI_number: 15901449 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 8 130 6 128 265 161 59.0 2e-39 MAVNGKTLIRRFNDYCPEWLAETGDPVGLHIGTLDKPIENVMVTLDVRPEVVAEAIEKQV DLIIAKHPPIFRPVKRLTTDNFQEKMYADLLKHDIAVYAAHTNMDIIDNGLNDWFCELLG IKQTTFLTKTHTVPYKKLAVFVPIDEAPQMREALGLAGAGSQGDYSKTSYSLIGTGRFTP TQGANPTIGEIGQESVVQEAKIEVIFPETKQEQVLAAMLQAHPYEEPAYDVYTIENQSKE FGLGRVGVLDKPVRLSDFVQQVKEAFQLDGLRVIAKDDTKMIQRVAICGGSGEKFYHDAL RKQADVYITGDVYYHTAHDMIAEDLPVIDPGHYIEALCKPKLVELMNQWKQENEWAVSIF ESEANTNPFRFK >gi|307679236|gb|GL457011.1| GENE 213 214471 - 215700 1862 409 aa, chain + ## HITS:1 COG:L60596 KEGG:ns NR:ns ## COG: L60596 COG2195 # Protein_GI_number: 15673792 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Lactococcus lactis # 2 407 3 408 413 536 66.0 1e-152 MYENLLPRFLRYVKTETRSDATSTTTPSTQTQVAFAQTLKKELEELGMSDVIYNETNGFV IATLPSNVEKDVRSIGFIAHMDTADFNAVNVSPQIVENYDGESTIPLDKEGKFTLNTKDF PNLKNYRGETLITTDGTTLLGADDKSGIAEIMTAMEYLINHPEIKHGTIRVAFGPDEEIG VGADKFDVAQFNVDFAYTMDGGPVGELQFETFNAAQAEITIQGKNVHPGTAKNTMINALQ LGIDFHNALPADEVPEKTAGEEGFYHLAAFAGTPEEATMTYIIRDHNREIFEARKAKIKE IQQTLNAPFDEERIKVDLFDQYYNMREVIEKDMSIVEIAKQAMEELSIQPIIEPVRGGTD GSKISYLGIPTPNIFAGGENMHGRFEFVSLQAMEKATNVIIKIAELNAK >gi|307679236|gb|GL457011.1| GENE 214 215846 - 216112 278 88 aa, chain + ## HITS:1 COG:MA2252 KEGG:ns NR:ns ## COG: MA2252 COG3326 # Protein_GI_number: 20091091 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Methanosarcina acetivorans str.C2A # 1 68 1 70 90 57 43.0 9e-09 MLQWIVIIYFLVINLVLFSMMGYDKKQAKRGNWRIPERRLLTIGLVGGGLGGLMGQKKFH HKTQKPVFALCYSIGVIAMISCIYLTFK >gi|307679236|gb|GL457011.1| GENE 215 216132 - 217160 801 342 aa, chain + ## HITS:1 COG:lin2698 KEGG:ns NR:ns ## COG: lin2698 COG0392 # Protein_GI_number: 16801759 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Listeria innocua # 11 332 14 341 357 65 21.0 2e-10 MKGKVKIGLNMLLMIIVLGVIFYVMDNSLSDIFAQLMETSWLVLIAVIFFGVVYQFAEGR SIKEIARYFNKDFTTVDGFFTSCYVAFYRIISFGTGTLLSEIYFYKKKGIPVSKSVGITA LHMIMYKAAVIFLAIIGLIIQFSLFYENAPKMIPFILAGVILTLVIIAALLILSSSLKLQ VLLVKFANRWFKRPKLRDWVDNCNLQIYSLRAAVQTITQDHSALLRIFSWNVFKLLFWYI IPYIVLVENHPNIDLLLVMSFTSFAVILSGVIPTPAGIGPFEFVYLLLFKPLVGNVDAVA SVLLYRFGSFVLPFLIGLVYVAIEKRKSLRIEIEEIKRQTDE >gi|307679236|gb|GL457011.1| GENE 216 217301 - 217876 512 191 aa, chain + ## HITS:1 COG:BH3017 KEGG:ns NR:ns ## COG: BH3017 COG0746 # Protein_GI_number: 15615579 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin-guanine dinucleotide biosynthesis protein A # Organism: Bacillus halodurans # 7 189 5 197 198 81 30.0 7e-16 MAKIIADCTAVLLCGGKSSRMGFDKALLKIQGQYVILQTAEKLMELFEEVILVTNDSQKF PKAFRKCTIIQDMYLGKGPLGGIVTAMNYTQKAEVFVIACDIPTFSPKLVYQLASKRGQN QVTIFDFEGRQEPLFGFYRCSCLPTFQKQLAQNNYQVRQEFERLSVKTVQLSKENQLKNV NRKEELSQWYR >gi|307679236|gb|GL457011.1| GENE 217 217892 - 218716 680 274 aa, chain + ## HITS:1 COG:lin0912 KEGG:ns NR:ns ## COG: lin0912 COG2116 # Protein_GI_number: 16799984 # Func_class: P Inorganic ion transport and metabolism # Function: Formate/nitrite family of transporters # Organism: Listeria innocua # 1 267 1 268 270 228 48.0 6e-60 MDFFSSEKIVASLGDKAEMKGKLSFVRLCILGIMAGFCIALGYLAFIRITGTAPTEWGSF NNFLGGALFPVGLIALTFVGGELATGNMMVMTLGVLQKKVRVGALCYNWLVVLLTNCLGG FLVAYLFGHIVGLTEGAFLDKTVAVAQAKIADPPIVAFVSGIGCNIFVCLAVYLGALAKS YLGKMFGLWFPVMVFVVCGFQHVVANAFIIPAAIFSQSTTISWWDYLQNTLWVFLGNAVG GSLFMAVPLIFMTKPTTVKPRVEKTIQTEELYGN >gi|307679236|gb|GL457011.1| GENE 218 218706 - 219287 520 193 aa, chain + ## HITS:1 COG:no KEGG:EF1387 NR:ns ## KEGG: EF1387 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 193 1 193 193 355 98.0 6e-97 MAIEIPNMIQIGSTGRNSGKTTLAEALIKQYQEVYPIYGLKIITISGQRGVCQRGTKGCG ICTSITAGYELVEEQETIGNKDTMKLLATGCQKVFLLKVFQENLAEAIQQFLKAVPAQAL IICESNSLRNVVQPGLFLMMNNQNRQKESAKKVIDKADFCLLSAEIPKELRIYYQGEQLQ VSLKRGNKKECVH >gi|307679236|gb|GL457011.1| GENE 219 219275 - 219598 532 107 aa, chain + ## HITS:1 COG:no KEGG:EF1388 NR:ns ## KEGG: EF1388 # Name: not_defined # Def: NAD-dependent formate dehydrogenase, gamma subunit, putative # Organism: E.faecalis # Pathway: Oxidative phosphorylation [PATH:efa00190]; Metabolic pathways [PATH:efa01100] # 1 107 1 107 162 196 100.0 2e-49 MCALSLIEKEAIILENDADPQRILNILIELQFASEEGYIDQETAQLVAEHLHLTEARVYE IVSFYAILKTEPQAKYVLKICNSTPCHYTGGAMVAEVLETILEVPEN >gi|307679236|gb|GL457011.1| GENE 220 219775 - 221073 1060 432 aa, chain + ## HITS:1 COG:TM0228 KEGG:ns NR:ns ## COG: TM0228 COG1894 # Protein_GI_number: 15643000 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit # Organism: Thermotoga maritima # 8 417 112 516 545 355 44.0 1e-97 MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGA AYPLGKKWRHLYHAKGTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSAK AGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENSA LLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQTFLEMGTADGG GTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRSLKFIHFGGQSGPIGAVA TLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGTT RILELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFPEEFETTA ETEIYATSKGGW >gi|307679236|gb|GL457011.1| GENE 221 221076 - 222587 1410 503 aa, chain + ## HITS:1 COG:AGl347 KEGG:ns NR:ns ## COG: AGl347 COG3383 # Protein_GI_number: 15890285 # Func_class: R General function prediction only # Function: Uncharacterized anaerobic dehydrogenase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 7 492 30 534 973 391 39.0 1e-108 MKTKLHTQTVKLSIDNQEVTVPKGTTILYAAKGLGVEIPTLCHLKELAPDGSCRMCVVEV EGGRRGGLTTACTAHCQEDMVVATHSEKVADSRRFILDLLLSNHKLECFSCGKNGDCQLQ QYALDYGIDGTSFTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIA NRGFETKMMPSYGQAFDQSICESCGNCVSSCPTGALTAKDTKEYRKWETQKIPTTCPHCG TGCQMNLLVKNNRLVGVEPIDGPANKNLLCVKGKFASYKFVGSGDRLTEPLIKRNGIFEP ASWEEALTLVSSKFNEIKAENGPDALAGFSCSRATNEDNYVFQKMVRAAFGTNNVDNCAR VCHSASVHGLAQTLGSGAMTNPIADITEDVDMILLVGSNPEEAHPVIGAQIRQAIQRGTQ VVVVDPRKINLVKDSALHLQVQAGTNVAFANGMMHVILKEGLADRHFIEERTEGFLDLEK MVADYTPERRKKSQKFVIFIQKI >gi|307679236|gb|GL457011.1| GENE 222 222602 - 223804 1433 400 aa, chain + ## HITS:1 COG:MJ1353m KEGG:ns NR:ns ## COG: MJ1353m COG0243 # Protein_GI_number: 15669895 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Methanococcus jannaschii # 1 398 275 673 673 398 49.0 1e-111 MYAKAEKAPIIYCLGVTEHSTGTEGVMSMSNLAMLVGKVGKPGCGVNPLRGQNNVQGACD MGCMPYDFPGYQKVNNPEVIDKFEKAWHVPLNRNTGLTSTKVLPAATAGNVKGLYIFGED PIVTDPDTGHVRQALESLDFLVVQELFMTETAAYADVVLPGISYAEKDGTFTNTERRVQR VRKAVEPRGQAREDYEIFCEVMTRMGYPCAYESAKEIMKEISAVTPSFGGINYERLEKES LQWPCRSLTDPGTPIMHVGSFARGKGLFKAIPYKQAQELPDEEYPYLMSTGRMLYHYNTR AMTGRTEGINQIANHSYIEINAVDAQALGIQEGDKVEVHSRRGKIETYAAVGNRVFPQEV FMTFHFPDGNVNEITNAVFDDIATIPEYKVCAVAIKPVNK >gi|307679236|gb|GL457011.1| GENE 223 223823 - 225025 870 400 aa, chain + ## HITS:1 COG:MJ0886_1 KEGG:ns NR:ns ## COG: MJ0886_1 COG0303 # Protein_GI_number: 15669076 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin biosynthesis enzyme # Organism: Methanococcus jannaschii # 4 313 10 318 403 187 36.0 2e-47 MIELEEAREKMTQHMKSQCETEEVALLDSLGRISGETIFAETAIPHFPRAGMDGYAVRAV ETRGATAESPSCLKVVGSLVAGDSMFYCNQTNNCAIKITTGAFIPTDFDAVVPQEWTDFG QDHVKIFRSVTAGQNYAEIGEDIAFQQKILAKHQQINSRMIGLLAMQGIDKVVVLKRMKV GILATGSELVSLEEPLSVGKIYNSNLYMLVAFVKASGNEVIHLDHCSDDPEELAKRLIEI SPKLDVLITCGGVSVGEKDNLPLAIKRIGGTELFHFVNMKPGTPVMGSQFQETLILSVSG NPFAAMVNLHLFYWTLLATFFNCVELNLKERTVILAHELAPSRLRRFYRAKEIDGTVNLV TKSHLSSNLSNTLETNCLLEQPASVLLKKGALVKVYYWQT >gi|307679236|gb|GL457011.1| GENE 224 225518 - 226000 410 160 aa, chain + ## HITS:1 COG:RSc0560 KEGG:ns NR:ns ## COG: RSc0560 COG0315 # Protein_GI_number: 17545279 # Func_class: H Coenzyme transport and metabolism # Function: Molybdenum cofactor biosynthesis enzyme # Organism: Ralstonia solanacearum # 2 149 8 156 158 142 51.0 3e-34 MNTQGEVHMVDISEKNDTERTALAYGEIHMLEATAEAVQTQMIKKGEVLQVARVAGITAA KRTFEWIPLCHLVALTKCEIQFDWRNQTCLEVRCFTKTVGSTGVEMEALTGVQAALLTIY DMCKAIDRGMTMTNIGLLEKNNGRSGHFIRSSIKSKESDE >gi|307679236|gb|GL457011.1| GENE 225 226006 - 226971 697 321 aa, chain + ## HITS:1 COG:lin1039 KEGG:ns NR:ns ## COG: lin1039 COG2896 # Protein_GI_number: 16800108 # Func_class: H Coenzyme transport and metabolism # Function: Molybdenum cofactor biosynthesis enzyme # Organism: Listeria innocua # 1 321 4 333 333 246 39.0 4e-65 MKDAFNREIDYVRLSLTDRCDLRCTYCMPATGLCFLKKEQLLTDDEIIFLLRILAKEDIK KVKLTGGEPLVRPNLLSLIKRIKQISGIEKVTLTTNGMKLAREAQGLKEAGLDGINISLD TLDPEEFREITRVGQLRNVLAGLEQAIDVGLPNIKINTVARKELSEATIVELAEIAKKET VHLRFIEMMPIGLGKEHPGKQQEEVEAILTKYYGTLQPYQKPLGNGPASYYALKDFKGKI GFISALGHCFCETCNRIRITADGHLKTCLHSADGYSLKEALAKEQTAELLGIIKSGIACK PEKHLFLEQQGEQRFMSQIGG >gi|307679236|gb|GL457011.1| GENE 226 226974 - 227408 333 144 aa, chain + ## HITS:1 COG:CAC1991 KEGG:ns NR:ns ## COG: CAC1991 COG2258 # Protein_GI_number: 15895261 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 4 144 3 143 145 130 46.0 6e-31 MKTGEIIAINISPRRGTQKKEIPEVNLIKGFGLENDAHGGNWHRQVSLLSFEEITAFNEK GARVGNGAFGENIIVSGIDLRQLPVGTKMKIGDSELVVTQIGKECHKHCQIYSRVGDCIM PREGIFAVVVTEGHIKKGDQLDVV >gi|307679236|gb|GL457011.1| GENE 227 227401 - 227883 242 160 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|134277849|ref|ZP_01764564.1| ribosomal protein S16 [Burkholderia pseudomallei 305] # 4 139 2 146 194 97 43 4e-19 MFKVGIVTLSDRCFQGLAVDQSGPLIREQLPALYQVTKQTILPDEENQLVELLQEWSKTC DLILTTGGTGLSERDRTPEATLRVAERIIPGISEGLRQLSLEKTPFAMLSRGVSVQRGRT LIVNLPGSPKSVTEHLHFLLPVLPHALNLITNKKIIHEEE >gi|307679236|gb|GL457011.1| GENE 228 227887 - 228858 1044 323 aa, chain + ## HITS:1 COG:SMc00519_1 KEGG:ns NR:ns ## COG: SMc00519_1 COG0303 # Protein_GI_number: 15965501 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin biosynthesis enzyme # Organism: Sinorhizobium meliloti # 8 323 10 320 340 105 27.0 2e-22 MKTIRTEEAVGLPLSHDITRIDYGKTKEVCFKKGHIVVQEDIPILLSLGKKHLFISLDPA EIHEEEAATFLYNLLTDDSCQPSEVHEGKIVAKASTRGLLKVNREKLIALNEIEGLALST KVTNIEVQKDEKVAAFRVIPLTISKSQLEKARQFSTSEPLISVKPFKKIRVGIVTTGSEV YTGLVEDAFYPVLKAKFSAYPLVTIVKQEIVDDQPQKITVAIKKMLAQGLDLIVCTGGMS VDPDDLTPLAIKQTGAEIVTHGTPVLPGSMFLLAYKGEQTIIGLPGGVLFSEKTVFDWLL PRLMAKEVIKKSEIIDLSYGGYL >gi|307679236|gb|GL457011.1| GENE 229 228877 - 229677 897 266 aa, chain + ## HITS:1 COG:BS_yvgL KEGG:ns NR:ns ## COG: BS_yvgL COG0725 # Protein_GI_number: 16080391 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, periplasmic component # Organism: Bacillus subtilis # 4 262 3 257 260 159 38.0 4e-39 MSKQKKTVFLLSLFSLVALIAACTNQPQKETVSTKKEEITLAAAASLESVMEKKIIPAFE KEHPDIQVTGTYDSSGKLQMQIEKGLKADVFFSASTKQMNALVAEKLINKKSVVPLLENQ LVLIVPNQDQAKWHDFSDLKKAQMIAIGDPASVPAGQYAEEGLKALGAWSYVEKHASFGT NVTEVLEWVANASAEAGLVYATDAATNSKVAIVAAMPEAALKKPIIYPVGKVAASKKQKS ADAFLNFLQSQQCRKYFENIGFKLTK >gi|307679236|gb|GL457011.1| GENE 230 229686 - 230357 622 223 aa, chain + ## HITS:1 COG:alr2433_1 KEGG:ns NR:ns ## COG: alr2433_1 COG4149 # Protein_GI_number: 17229925 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, permease component # Organism: Nostoc sp. PCC 7120 # 1 216 3 216 223 165 45.0 6e-41 MDVRPILLSFQTAIIAILFTFVLGTGVAYIVFRLKNRKLKILLNSLFTLPLVLPPTVFGF FLLTIFGVQQPVGRFLLDFFAIQVVFSWPATVIAAVAVSFPLMYRSALTAFEQMDSELLA VAQTLGFSESRYFRKIALPLSMNGLLAGGVLAFARGLGEFGATTMLAGNIAGKTRTLPLA IYSAVASGDWRLANQYVVIMLLLCLIILFFTEFFSQRAWRRSE >gi|307679236|gb|GL457011.1| GENE 231 230354 - 231358 848 334 aa, chain + ## HITS:1 COG:sll0739_2 KEGG:ns NR:ns ## COG: sll0739_2 COG1118 # Protein_GI_number: 16331977 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type sulfate/molybdate transport systems, ATPase component # Organism: Synechocystis # 5 269 40 311 395 234 45.0 1e-61 MRLIVDIQKELKSHTLQIQFETKTQTTGILGASGCGKSMLLKCIAGVETADKGQIVLNDQ VLFDAEQKINLSPQQRKIGLLFQQYALFPHLSVVENLTCVTKDLQLVTQLLASFHLTKVQ QQYPSQLSGGQRQRVAFARMLAAQPAYLLLDEPFSALDAPLKEELQIELQQRLSNLNQHT LIVSHSLDELYKLCQSLVIITKNQTLFGATNQLFNQPQTIEAVKLTGCKNIWPVKRIDAH RVQVIGWQQTLTVTQEVPSSCHFIGIRAHDFTTEPQATNQIEVHHLQTLSAPFEQSAWFQ HQQTKIWWKGSNRLNPKVITQLSIPPTAIMPLCL >gi|307679236|gb|GL457011.1| GENE 232 231480 - 233582 2512 700 aa, chain + ## HITS:1 COG:BS_yvgW KEGG:ns NR:ns ## COG: BS_yvgW COG2217 # Protein_GI_number: 16080402 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Bacillus subtilis # 1 694 4 700 702 688 52.0 0 MQKSYKLEGLDCASCADKIEKSVQKIHGVEKARVDFMAEKMTLEVESGHDLEVENEARAV IGKLEPDVKVISLKDVKEEEGRNPNKNRLIRIIIAFVLFLALIIIKPSNNWVALASYLVV YVLIGGDIVKRAVTNIFRGEVFDENFLMSVATIGAFFIGEYPEAVAVMLFYQVGEWFQSA AVDQSRKSIAKLMDIRPDSANLLVNGQIKAVAPDTIEIGQQILVKPGEKVPLDGQIIDGS SMVDTSALTGESVPRTVKVGDEILGGFINKNGALTINVTKKFGDSTVSKILDLVENASSK KAPAENFISKFARYYTPVVVVLAILLAVIPPFIFPDTSINEWVYRALTFLVISCPCALVI SVPLSFFGGIGGASKLGVLIKGSNYLEILANTETIVFDKTGTLTKGNFVVQNITSVVLPE EELLRLTATAEQLSTHPIAISIKESYGKETVPATAIEEVAGHGIKATIEGKTVLVGNAKL MKQFGIEAPEVKEAGTLIFVAIDNQFAGYLVIADQLKPDAISAIKELKAEGVKQTVMLTG DNQQVAEAIAKEVGVDKVYAELLPDGKVDRLEELLKASSPKNKVAFVGDGMNDAPVLARA DVGIAMGGLGSDAAIEAADVVIMNDEPSRIASAIKLSRKTLRIVKQNIIFAIAVKIIVLA LGALGLASMQAAVFADVGVTIIAVLNAMRCLRVEKMKDNN >gi|307679236|gb|GL457011.1| GENE 233 233703 - 233888 87 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229545914|ref|ZP_04434639.1| ## NR: gi|229545914|ref|ZP_04434639.1| hypothetical protein HMPREF0349_1131 [Enterococcus faecalis TX1322] hypothetical protein HMPREF9509_01699 [Enterococcus faecalis TX0411] hypothetical protein HMPREF0349_1131 [Enterococcus faecalis TX1322] hypothetical protein HMPREF9509_01699 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9496_01076 [Enterococcus faecalis TX4000] # 13 61 1 49 49 81 100.0 2e-14 MIALYRVFSFDAMLRFPPVNQSILAYCTMKKKRSAIFVQILSYYMPQSEKFKDFFTRTLA I >gi|307679236|gb|GL457011.1| GENE 234 233851 - 234294 569 147 aa, chain + ## HITS:1 COG:no KEGG:EF1402 NR:ns ## KEGG: EF1402 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 147 1 147 147 190 100.0 1e-47 MASNEKTRYKAIIADHTYTIIGQESKQHMDLVTKIVNEQLAEIKHLSPQTDTEQASVLLA INAISDQLKKQEYALKLEKQVADLKQKTIRLAELENRVRRMEIIEEEARDVLKKNGQEDV EIHNHVEAQQILNENRKQQIQNKGVSE >gi|307679236|gb|GL457011.1| GENE 235 234314 - 234862 441 182 aa, chain + ## HITS:1 COG:BH3108 KEGG:ns NR:ns ## COG: BH3108 COG1286 # Protein_GI_number: 15615670 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, required for colicin V production # Organism: Bacillus halodurans # 1 177 1 175 179 105 33.0 5e-23 MLTILILLLLAFGFYTGAKRGLILQVLYSVGYLISYFVARTYYKEVASHLELYIPYPSVT PTSKLVFFNQEISLDLDKAFYSAVAFLLLLFAGWLVVRFLAIFLHGLTFIPVLKQVNGLL GGVLSVLVLYVGLFLVLATASMIPSDIVQNQFRSSGLARGIVKNTPILTKQAYELWVEPI TK >gi|307679236|gb|GL457011.1| GENE 236 234973 - 237339 3020 788 aa, chain + ## HITS:1 COG:lin1195 KEGG:ns NR:ns ## COG: lin1195 COG1193 # Protein_GI_number: 16800264 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Listeria innocua # 1 788 1 785 785 729 53.0 0 MNQRILSTLGFDKVKQQLLQFIVTAQGTNEVSELLPIADENKIQAWLNETQDGLKVQRLR GGIPIPKLENIQPHMKRIEIGADLNGIELAQVGRVLSTTSELTRFFDELSENEVDFERLY MWREQLEVLPELNRQLKQAIDDDGYVTDEASPALKAIRQNIRRSEQTIREELDSIIRGKN ARYLSDALVTMRNERYVIPVKQEYKNIFGGVVHDQSASGQTLFIEPKQILEMNNRLRQQQ IAERNEITRILAELSAELVPYRREITHNAYVIGKLDFINAKARLGKELKAVVPEISQANH VVFKQARHPLLDPEKAVANDIVIGEEYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPI PVEEESKMGIFTEVFADIGDEQSIEQSLSTFSSHMTNIVSVLKKVDHQSLVLFDELGAGT DPQEGAALAIAILDSLGAKGAYVMATTHYPELKVYGYNRAGTINASMEFDVDTLSPTYRL LIGVPGRSNAFEISKRLGLDNSIIEAAKQIMDGESQDLNEMIEDLENRRKMAETEYLEAR HYVDESAALHKELKEAYQVFFEEREKELQKARKEANKIIAEAEENAETIISDIRKMQLES GQQGGVKEHQLIDAKTQLSQLHHEETKLAKNKVLKKAKEQKKLKAGDEVIVNTYGQRGTL LKDNGKGQWQVQLGILKMNVSEEDMTPVAPQKEAKPRVTTVRSAESSHVGTQLDLRGKRY EEALAEVDQYIDAAILAGYPQVTIVHGKGTGALRTGITEFLKNHRSVKSYEFAPQNQGGN GATVVKFQ >gi|307679236|gb|GL457011.1| GENE 237 237437 - 237751 556 104 aa, chain + ## HITS:1 COG:SPy1835 KEGG:ns NR:ns ## COG: SPy1835 COG0526 # Protein_GI_number: 15675662 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Streptococcus pyogenes M1 GAS # 1 102 1 102 104 148 73.0 3e-36 MTQAITDKDFATETDEGLVLIDFWATWCGPCRMQAPILEQLSEEYDEDEVKIVKMDVDEN PATPASFGIMSIPTLLLKKDGEVVEKAVGVHTKDQLQAMISKHL >gi|307679236|gb|GL457011.1| GENE 238 237916 - 239712 1771 598 aa, chain + ## HITS:1 COG:lin1197 KEGG:ns NR:ns ## COG: lin1197 COG0322 # Protein_GI_number: 16800266 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Listeria innocua # 2 588 3 590 603 855 71.0 0 MNERIKNKLALLPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFRGSHDTKTERLVSEI DDFEYIVTESNIEALLLEINLIHKNNPKYNIMLKDDKTYPFIKITNEKYPRLMITRKVLK DKALYFGPYPDVNAANETKKLLDRLFPLRKCNPSQKTPCLYYHLGQCLCPYAFDVDPQVY KDMVEEIKGFLSGGHTEIQDRLQEKMAYAAAHMEFEKAAEFRDQIKAIETVMTRQKMTNV DLIDRDVFGYAVDKGWMCVQVFFVRQGKLIERDVSIFPFYDDASEAFLTFIGQFYQENEH FVPKEVLIPDDIDKESVEALLATKVLQPQRGEKKKLVKLASKNAAVALNEKFDLIVRKQE RTIGAVEKLGNAMNIPAPIRIEAFDNSNIMGTNPVSAMVVFIDGRPAKNEYRKYKIKTVQ GPDDYASMREVIYRRYSRVLKEGLPFPDLILIDGGKGQVDVAKDVLANQLGVDIPVAGLA KNDKHKTSELLFGPNLEVVPLERNSQEFFLLQRIQDEVHRFAITFHRQLRSKNSFASKLD NIEGLGPKRKKNLLKEFKSLKNITAASVEELRKAGLPETVAKNVYRHLHQETTSEIEK Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:30:43 2011 Seq name: gi|307679235|gb|GL457012.1| Enterococcus faecalis TX2141 genomic scaffold Scfld57, whole genome shotgun sequence Length of sequence - 18646 bp Number of predicted genes - 18, with homology - 16 Number of transcription units - 11, operones - 5 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 46 - 1209 1304 ## COG0153 Galactokinase - Prom 1383 - 1442 5.9 + Prom 1197 - 1256 6.1 2 2 Tu 1 . + CDS 1429 - 2466 466 ## PROTEIN SUPPORTED gi|15900011|ref|NP_344615.1| aldose 1-epimerase + Term 2477 - 2541 11.3 + Prom 2516 - 2575 4.2 3 3 Tu 1 . + CDS 2597 - 2743 246 ## EF1067 hypothetical protein + Term 2747 - 2807 11.7 + Prom 2784 - 2843 6.5 4 4 Tu 1 . + CDS 2864 - 3502 695 ## COG0110 Acetyltransferase (isoleucine patch superfamily) + Term 3507 - 3550 1.6 - Term 3494 - 3538 6.1 5 5 Op 1 . - CDS 3547 - 3969 489 ## COG2764 Uncharacterized protein conserved in bacteria 6 5 Op 2 . - CDS 4045 - 4524 465 ## PROTEIN SUPPORTED gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 - Prom 4546 - 4605 4.0 7 6 Op 1 . - CDS 4648 - 4731 85 ## 8 6 Op 2 1/0.000 - CDS 4759 - 5976 1363 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 9 6 Op 3 . - CDS 5973 - 7196 1067 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 10 6 Op 4 . - CDS 7224 - 8885 1847 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 9003 - 9062 6.7 + Prom 9175 - 9234 6.9 11 7 Tu 1 . + CDS 9266 - 10936 1708 ## COG2508 Regulator of polyketide synthase expression + Term 10941 - 10981 2.1 - Term 10918 - 10977 10.0 12 8 Op 1 . - CDS 10991 - 11416 625 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins 13 8 Op 2 . - CDS 11416 - 13014 1379 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family - Prom 13094 - 13153 6.8 - Term 13226 - 13274 10.2 14 9 Op 1 . - CDS 13283 - 13798 294 ## EF1055 tunicamycin resistance protein, putative 15 9 Op 2 . - CDS 13795 - 13872 63 ## - Prom 14021 - 14080 5.7 + Prom 14171 - 14230 5.1 16 10 Op 1 6/0.000 + CDS 14340 - 16097 1394 ## COG4986 ABC-type anion transport system, duplicated permease component 17 10 Op 2 . + CDS 16156 - 16965 317 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Prom 16972 - 17031 4.5 18 11 Tu 1 . + CDS 17264 - 17524 305 ## gi|256618635|ref|ZP_05475481.1| predicted protein - TRNA 17542 - 17625 62.3 # Leu CAA 0 0 - TRNA 17639 - 17709 71.3 # Cys GCA 0 0 - TRNA 17735 - 17806 67.6 # Gln TTG 0 0 - TRNA 17821 - 17893 65.0 # His GTG 0 0 - TRNA 17930 - 18003 68.8 # Trp CCA 0 0 - TRNA 18008 - 18088 72.8 # Tyr GTA 0 0 - TRNA 18094 - 18166 75.3 # Phe GAA 0 0 - TRNA 18212 - 18287 75.5 # Asp GTC 0 0 - TRNA 18298 - 18370 88.0 # Val TAC 0 0 - 5S_RRNA 18310 - 18366 92.0 # AF302131 [D:490..741] # 5S ribosomal RNA # Streptococcus agalactiae # Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus. - TRNA 18398 - 18469 70.2 # Glu TTC 0 0 - TRNA 18487 - 18575 53.0 # Ser GGA 0 0 Predicted protein(s) >gi|307679235|gb|GL457012.1| GENE 1 46 - 1209 1304 387 aa, chain - ## HITS:1 COG:SP1853 KEGG:ns NR:ns ## COG: SP1853 COG0153 # Protein_GI_number: 15901681 # Func_class: G Carbohydrate transport and metabolism # Function: Galactokinase # Organism: Streptococcus pneumoniae TIGR4 # 3 386 8 391 392 457 61.0 1e-128 MEELLMNRFVEIFGEKGTACYFAPGRINLIGEHTDYNGGHVFPAAITLGTFGVARKRDDQ KIRMFSDNFKEVGLIEFSLEDLTYSDSDDWANYPKGVLNYLIESGHNIDSGLDVLFYGTI PNGAGLSSSASIELLMGTICNDLYALHCPMLELVQIGKKVENEFIGVNSGIMDQFAVGMG EKDQAILLDTNNMHYEMVPAKLGEYTIVIMNTNKRRELADSKYNERRAECEEAVRLLQKE LSIEFLGELNSETFEQYQALIGDPTLIKRARHAVTENERTLLAKQALTEGDLEEFGLLLN ASHRSLKEDYEVTGIELDTLVACAQEQPGVLGARMTGAGFGGCSIALVPKQNIDAFIEAV GQSYQDKIGYAADFYPASIDDGARKLF >gi|307679235|gb|GL457012.1| GENE 2 1429 - 2466 466 345 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900011|ref|NP_344615.1| aldose 1-epimerase [Streptococcus pneumoniae TIGR4] # 9 344 14 343 345 184 32 5e-46 MTISTESFGQGMLLYTLTNKNGVTLKATDFGARIVALDVPLTKNESRSLVLGFPSADEYL SKDLYFGATIGRTAGRIADGSFKLAGKTYQTMINTPTQTTLHGGTPGFESKKWHSEIQEA QVNPSVKFWLESPAGENGFPGNLTVSVTYTLTEENEWQIEYQATTDEQTLFNPTNHVYFN LTGNPAIPIDAHELQINAQKFVPLDERVLPLGELASVDQTAFDLQKPKKLAEVFSSTDEQ IQKMNGFDHPFILTNHDLINPDVILKSPTKDITLEMFTDQPSVVIFSANFADNGPDIQGQ KLVNHGALTFETQVCPGAERFPLFGSITLSPEQEFHSTTRFKLIY >gi|307679235|gb|GL457012.1| GENE 3 2597 - 2743 246 48 aa, chain + ## HITS:1 COG:no KEGG:EF1067 NR:ns ## KEGG: EF1067 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 48 20 67 67 91 100.0 1e-17 MYAIKFFHGYLTADGKRTRDKSGCLVYHSEKEAQKLADKIGGRVKKIG >gi|307679235|gb|GL457012.1| GENE 4 2864 - 3502 695 212 aa, chain + ## HITS:1 COG:L1734467 KEGG:ns NR:ns ## COG: L1734467 COG0110 # Protein_GI_number: 15673662 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Lactococcus lactis # 1 195 1 193 203 212 50.0 4e-55 MKQNDFDYMQMLKGELYYAPTILPENKSTKGKVLAQKINQLPIDNVKEIVALEKELLGKT GNELYITPPLHVDYGRHIEVGENFYANMDCIFLDVNKIIFGDNVMVGPRASFYTAGHPID PTIRTAELEFGTPIIVEDNVWIGGSATILPGVTIGKNAIVAAGAVVTKDVPANTIVGGNP AKVIRKIDENDQQFWTEKQRQYQIAKKQFFHE >gi|307679235|gb|GL457012.1| GENE 5 3547 - 3969 489 140 aa, chain - ## HITS:1 COG:lin1207 KEGG:ns NR:ns ## COG: lin1207 COG2764 # Protein_GI_number: 16800276 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 2 135 3 133 135 140 50.0 6e-34 MLELYINFKGEAKEAITFYEDVFDTKCQNLMTFGEAPEDPEHPINDEIKDLVMNASIIIE GTYVMISDVPDMFGFEVTEGNNLSLVVSTDDDEKIDRLFKRLSEGGTVTMPLSETFWSKK YGSLKDQFGIHWMFNYYEEN >gi|307679235|gb|GL457012.1| GENE 6 4045 - 4524 465 159 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 [Streptococcus pneumoniae R6] # 6 157 3 154 165 183 59 7e-46 MTEQTRENKKAAYELCLQQLSGLLEIETDAIANLANSSALIAQTLPDTVFAGYYLYKDEE LVLGPFQGKVSCTRIKMGKGVCGESAEKQATLIVDNVKTHANYISCDSAAMSEIVVPMVK NHQLVGVLDIDSGVTNSYDAVDQLYLEKFVTLLLEKSDF >gi|307679235|gb|GL457012.1| GENE 7 4648 - 4731 85 27 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLKSQTEETGFSSEQRTVLVLRLLVTV >gi|307679235|gb|GL457012.1| GENE 8 4759 - 5976 1363 405 aa, chain - ## HITS:1 COG:yahJ KEGG:ns NR:ns ## COG: yahJ COG0402 # Protein_GI_number: 16128309 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Escherichia coli K12 # 7 405 55 454 460 231 34.0 2e-60 MTASIVYLNNVRLETGFAKDHHELTYTKTARYTLAIQEGKIQAIIPQNQVTEKQQGTDLN GQLAIPAFQESHNHLDKTYLSLGWRASQPVKNLKERLADEASELKLLAPSTEQRATAMIE KLIGYGASYIRTHVNIDPYVELENFWGVKRALEKYAHVIDYDIVVFPQHGLLKNPHTVLL MREALKNGGTMVGGLDPAGIDYAIEESLETIFDLAEEFQVGIDIHLHDTREVGVYTIDKF LDILEERKFTQRTAISHAFALLDVRPAEKEKLYQRLATHQTAIMSTIPYDPRYLLPPIDV LRQAGVSVHLGSDGFFDSWSSNVSGDLFEKLRNFCEMTGKITEEQLTQAYVHGCGKEAPF SFEEERLWFTEGDEANFIFTEAASTAEVIARKPQKRQIMLKGQWV >gi|307679235|gb|GL457012.1| GENE 9 5973 - 7196 1067 407 aa, chain - ## HITS:1 COG:ECs0373 KEGG:ns NR:ns ## COG: ECs0373 COG0402 # Protein_GI_number: 15829627 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Escherichia coli O157:H7 # 3 398 56 454 460 285 39.0 1e-76 MLLKNCKLETGFSTVNQRIVATETASYDIRIENEVCTAVAPQLRPLENETVIDVNQQLVL PALREMHIHIDKTYFGGPCKACRPLTKGILTRIEEETWLLPEQLPTSLERACQVIEQYIQ QGHYHIRSHCNVDPSIGTKHIEITKEAFSRYEQYITHEIVAFPQHGLLRSQVEPLMREAL RMGATHVGGVDPALVDRHVNHSIAKIFELATTFNKKIDVHLHARDTLGLYEFNKFVDYTE QAKMFGKVTLSHALALGSLEEAAIRDIAQKFSETGIDLTSTVPIGMPTMPIPTLVEQGVK ISVAHDSLTDHWSPFGSGNTIEKLNTAAQRFKISDEYRLNRLWGLASNFVTPLDPNGQRV WPNVGDSADFLLFNAESTAHVIARQQPIQQLILKGQLVEAVQKGEKE >gi|307679235|gb|GL457012.1| GENE 10 7224 - 8885 1847 553 aa, chain - ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 18 552 22 557 559 405 39.0 1e-112 MKKLKMLGCVGLLLALTACQAGTGNSADSNKAAEQKIAISSEAAISTMEPHTAGDTTSTL VINQVYEGLYVLGKEDELELGVAAEEPAISEDETVYTFKIREDAKWSNDDPVTANDFVYA WQQVASPKSGSIHQALFFDVIKNAKEIALEGADVNTLGVKALDDKTLEITLERPTPYLKS LLSFPVLFPQNEKYIKEQGDKYATDAEHLIYNGPFKLKEWDNASSDDWTYEKNDTYWDAE KVKLTEAKVSVIKSPTTAVNLFDSNELDVVNKLSGEFIPGYVDNPDFLSIPQFVTYFLKM NSVRDGKENPALANNNIRKALAQAFDKESFVKEVLQDQSTATDQVIPPGQTIAPDGTDFT KLAAKKNNYLTYDTAKAKEFWEKGKKEIGLDKIKLEFLTDDTDSAKKAAEFFQFQLEENL DGLEVNVTQVPFTIRVDRDQTRDYDLELSGWGTDYRDPLTVMRIFTSDSTLGGVTFKSDT YDQLIQETRTTHAADQEARLNDFAQAQDILVNQETVLAPIYNRSISVLANQKIKDMYWHS FGPTYSLKWAYVN >gi|307679235|gb|GL457012.1| GENE 11 9266 - 10936 1708 556 aa, chain + ## HITS:1 COG:BS_yunI KEGG:ns NR:ns ## COG: BS_yunI COG2508 # Protein_GI_number: 16080295 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Bacillus subtilis # 2 552 1 528 531 149 22.0 1e-35 MMTVTDLLHAEELPGLTLLTHETNLDAPILQANILENPDAFDWLTPGEILLTTGYIFKDQ PCLQKRLIQELANMNCAALGFKVQRYFNEVPQEMIQLANDVGLPILSIPYNYNFSQIISL VNRRVNQPDETISQHSVHMHNKFYTIIKAGGKSTQLLEVLSAAIQAPVMLLDERFQIMNH FDLPDAPTRITSILNNATLKKQFETALKAQNNELLLFYKEPLTVEFSLANHQLSLRILPI KKKNLSLSYLVIWQTTKKLQTIDLLSVEVCAHYLLPQLQLESSENLTTRQKIGALFQDLI QEKNTNPQAWQEFSNYLQLNEKDTFSLLLVAIEQLEQLFNPTIQMNSIGHQLNHILEGYR QKITAFPTQTGFILLLENPAQEEATYLAQTTHLAKNLLEQLMKLNPKLSFKLAIGPTVKK ITNLCDSYKLAQETFHLAQASQELQQRTILNYDDLFFYRLMIETLTKQAKQKIYQRLIEP LEKEDQKHESSLLETINTYFQSNKNISLTATNMYVHRNTIIYRLKKIEEILHLTLEFPDS SLQLSLAVYLYKQKLL >gi|307679235|gb|GL457012.1| GENE 12 10991 - 11416 625 141 aa, chain - ## HITS:1 COG:L103195 KEGG:ns NR:ns ## COG: L103195 COG0589 # Protein_GI_number: 15674218 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Lactococcus lactis # 2 141 4 144 145 64 26.0 5e-11 MKFSKIMVGVEESPDALKAFHYAIQKAKEEQAELVIVSILEEKEINVYQSLDKNYWQEQL AKLEKQTEKYQQEALANGIDKVSVIVNEGNPGELIINKLIPLNKPDLLIIGSKSTSKLKS FFGSQAAYMARYAPISVMIIR >gi|307679235|gb|GL457012.1| GENE 13 11416 - 13014 1379 532 aa, chain - ## HITS:1 COG:L91569 KEGG:ns NR:ns ## COG: L91569 COG1914 # Protein_GI_number: 15673064 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Lactococcus lactis # 3 310 2 306 314 447 77.0 1e-125 MKNSEEHEPKQRHHLIEYANGPSLEEINGTIDVPKNMSFWKTLFAYSGPGALVAVGYMDP GNWSTSITGGQNFQYLLMSIILISSLIAMLLQYMAAKLGIVSQMDLAQAIRARTSKTLGI VLWILTELAIMATDIAEVIGGAIALYLLFHIPLGLAVFITVFDVLLLLLLTKIGFRKIEA IVVALIVVIFVIFAYQVALSNPVWGDVIKGLVPSAEAFSTSHAVNGQTPLTGALGIIGAT VMPHNLYLHSSVVQSRKIDRKDKTDIQRALRFSTWDSNIQLTMAFFVNSLLLIMGVAVFK SGSVKDPSFFGLFDALSNPAVMSNSILAHIAGSGILSILFAVALLASGQNSTITGTLTGQ IIMEGFIHMRVPIWLRRMVTRLLSVIPVLICVLMTSGKSTVEEHIAINNLMNNSQVFLAF ALPFSMLPLLMFTDSRVEMGEHFKNSWLIKLLGWVSVIGLIYLNMKGLPDQIEGFFGDNP TASQITLADNIAYVIIALVILLLVWTVVELYKGDKRYAQQLAAMEQQVEEVK >gi|307679235|gb|GL457012.1| GENE 14 13283 - 13798 294 171 aa, chain - ## HITS:1 COG:no KEGG:EF1055 NR:ns ## KEGG: EF1055 # Name: not_defined # Def: tunicamycin resistance protein, putative # Organism: E.faecalis # Pathway: not_defined # 2 171 1 170 170 324 97.0 7e-88 MIIIWLNGAFGSGKTTIAHELQQKLPNAIIYDPEIIGSALMELVPEEMKENDFQEYQEWR CWNAHLLKRMSKESGRPIIVTMTLYKNEYEEELIGYLRRAGIDVYHFLLAVEKEEILQRL LKRNDGTFEWGKNKLPEVLEGFRQIKFTEIFRNHSADTTEIVASILNRITE >gi|307679235|gb|GL457012.1| GENE 15 13795 - 13872 63 25 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAKKIKSNLAPKLNNKEICSEERKL >gi|307679235|gb|GL457012.1| GENE 16 14340 - 16097 1394 585 aa, chain + ## HITS:1 COG:XF0411 KEGG:ns NR:ns ## COG: XF0411 COG4986 # Protein_GI_number: 15837013 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type anion transport system, duplicated permease component # Organism: Xylella fastidiosa 9a5c # 64 583 62 581 584 300 35.0 6e-81 MKAVTASSKKNTLLAKSIGNLTLLIILGIFIFIIVFSWLKMNRPLHTLPSEEFLATPSKT DDFLSPSNLFYFSIRTMFRMIVEMAWSFLFSFVFGILAVKYKTARRVILPLVNFLESVPL LGFLTFTTAWLLGLFPGNVMGAEAVAIFAIFTGQAWNIMLTLYQIMEVIPSDLVNVTDQF KYNAWEKFWRLEFVYSIPGLLWNVIISQTAAWFALVASEQASVAFPKETNLYLPGIGSYI QVALNRADFKSCLWAVFALLINVVILNFLVFQPLVRATYYFKYETDVESTTPPKSIIYHL LKKATLTKYFSKAFVKFSHFWIYDLPKVWYFFKLDYLYRLLAKLRHFFKTLWYVSLTIIG VYCSIKLYHFLPHQDFSMIPRLTLYTTLRVTLAMVVAGIIFTPLAIWVANDNRRLSIVQP IGQILGSIPSNVYTPFIVLIISMGFNKLEWWILPLIMVGCQWYFFFNVIAGYLAIPDDIR DVTKLFKLSKWQWWTKFLIPSILPYLITAIINAAGAAWNADIAAESIQWGKKSIDVTGLG QYIAANDGVKDKSALGTLAMCFVVGLCIAFVWQPLYRAAKQKFHY >gi|307679235|gb|GL457012.1| GENE 17 16156 - 16965 317 269 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 16 227 1 212 245 126 34 9e-29 MISLDLSNKTMENKELLSIKSVYKEFEIEGHSEHLKVLENIDLTVKTNEFLSIIGQSGTG KSTLLRSIAGLLRTTRGEITFEDKIINEPDANIGMVFQHFALFPWLTVEKNISFGLENRK EISREQINKRVSNLIEMIGLTGFEKAYPRELSGGMKQRVGFARALAIEPSLLLLDEPFSA LDIITASQLSNDLLEIWLNNQIATKLIVMITHDVQQAVQLSDRVVLMDANPGRIAKIYSI DIPRNQRSPKTTIDIVEQITEEMVRRIHL >gi|307679235|gb|GL457012.1| GENE 18 17264 - 17524 305 86 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256618635|ref|ZP_05475481.1| ## NR: gi|256618635|ref|ZP_05475481.1| predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] hypothetical protein HMPREF9498_01503 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9515_01734 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9512_02543 [Enterococcus faecalis TX0635] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] hypothetical protein HMPREF9515_01734 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9498_01503 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9512_02543 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9500_00963 [Enterococcus faecalis TX0017] hypothetical protein HMPREF9501_03164 [Enterococcus faecalis TX0027] hypothetical protein HMPREF9495_00694 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9497_02640 [Enterococcus faecalis TX4244] hypothetical protein HMPREF9513_02613 [Enterococcus faecalis TX0645] hypothetical protein HMPREF9511_03028 [Enterococcus faecalis TX0630] # 1 86 1 86 86 147 100.0 4e-34 MTTMLAIIGTVAIITVQVIEYNMTEIHIPTAGTFNDDDAEPPHSSVTLVFIRTILITLSL NFPSHFFEMVFLCILENNKQKRLLNQ Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:31:03 2011 Seq name: gi|307679234|gb|GL457013.1| Enterococcus faecalis TX2141 genomic scaffold Scfld58, whole genome shotgun sequence Length of sequence - 928 bp Number of predicted genes - 2, with homology - 1 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 100 75 ## 2 1 Op 2 . - CDS 118 - 858 423 ## LLKF_1053 phage protein Predicted protein(s) >gi|307679234|gb|GL457013.1| GENE 1 1 - 100 75 33 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRPHKKLFAPLKTMKLTTEKINELLGVDDAYKA >gi|307679234|gb|GL457013.1| GENE 2 118 - 858 423 246 aa, chain - ## HITS:1 COG:no KEGG:LLKF_1053 NR:ns ## KEGG: LLKF_1053 # Name: pp124 # Def: phage protein # Organism: L.lactis_KF147 # Pathway: not_defined # 2 244 4 248 257 366 77.0 1e-100 MIVWALFDSGNGCYKRSAQKFEDIEIYSIGLDIENKNDHFIHLNLADYSYMFNDNKLFKV LDKLSKPDLIIASPPCESWSVASAMKNGNACWKREDVTDNLFAPQILPSPFTIRTTIDYE DTNYVYERQFLKRVNGELTVFNTIKIIKKYQPKYFIIENPASGKIWEYIEDVLNFKLPFK NLTRYNNYDYPLQKPTKFASNIHLGLKNKVIKQEIAWGNFSKSYNERSNIPEKLVDDIFK KVLEKK Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:31:12 2011 Seq name: gi|307679233|gb|GL457014.1| Enterococcus faecalis TX2141 genomic scaffold Scfld67, whole genome shotgun sequence Length of sequence - 721 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 625 150 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase - Prom 661 - 720 7.6 Predicted protein(s) >gi|307679233|gb|GL457014.1| GENE 1 2 - 625 150 208 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 4 194 10 211 317 62 29 9e-11 MTYKHLTIDELTMIESYYLQHNKPVEIANRMGRAIQTIYNVVNKFKQGKTALDYWHQYKE NKKKCGRKVIQLPAHEVDYIKEKVTLGWTPDVIIGRKERPVSCGMRTLYRLFSKGIFDID TLPMKGKRKPNGHQEKRGKQQYQRSIHDRPDNYPDFNSEFGHLEGDTIVGIHHKSAVITL VERLSKVIITIKPNGRKALDIETALNQW Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:31:24 2011 Seq name: gi|307679232|gb|GL457015.1| Enterococcus faecalis TX2141 genomic scaffold Scfld69, whole genome shotgun sequence Length of sequence - 38763 bp Number of predicted genes - 37, with homology - 32 Number of transcription units - 18, operones - 11 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 9/0.000 + CDS 466 - 1296 259 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 2 1 Op 2 . + CDS 1298 - 2017 491 ## COG3279 Response regulator of the LytR/AlgR family + Term 2026 - 2071 3.2 + Prom 2083 - 2142 10.1 3 2 Op 1 9/0.000 + CDS 2229 - 2591 638 ## COG1302 Uncharacterized protein conserved in bacteria 4 2 Op 2 4/0.000 + CDS 2674 - 4350 2241 ## COG1461 Predicted kinase related to dihydroxyacetone kinase + Term 4379 - 4428 15.6 + Prom 4363 - 4422 4.1 5 3 Tu 1 . + CDS 4466 - 6502 2307 ## COG1200 RecG-like helicase + Prom 6518 - 6577 6.4 6 4 Op 1 3/0.000 + CDS 6605 - 7606 1287 ## COG0416 Fatty acid/phospholipid biosynthesis enzyme + Prom 7629 - 7688 4.0 7 4 Op 2 . + CDS 7743 - 7982 419 ## COG0236 Acyl carrier protein + Term 7999 - 8038 6.1 + Prom 8171 - 8230 8.5 8 5 Op 1 44/0.000 + CDS 8279 - 9286 602 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 9 5 Op 2 6/0.000 + CDS 9286 - 10230 1153 ## COG4608 ABC-type oligopeptide transport system, ATPase component 10 5 Op 3 49/0.000 + CDS 10230 - 11192 1071 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 11 5 Op 4 5/0.000 + CDS 11220 - 12143 1094 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 12 5 Op 5 . + CDS 12172 - 13950 2432 ## COG0747 ABC-type dipeptide transport system, periplasmic component + Term 14057 - 14110 12.5 + Prom 14190 - 14249 7.3 13 6 Op 1 6/0.000 + CDS 14280 - 14972 820 ## COG0571 dsRNA-specific ribonuclease 14 6 Op 2 1/0.000 + CDS 14993 - 18571 4534 ## COG1196 Chromosome segregation ATPases 15 6 Op 3 2/0.000 + CDS 18596 - 19423 1110 ## COG0561 Predicted hydrolases of the HAD superfamily 16 6 Op 4 . + CDS 19426 - 20754 1005 ## PROTEIN SUPPORTED gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 + Term 20784 - 20848 9.2 + Prom 20828 - 20887 2.9 17 7 Tu 1 . + CDS 20914 - 21399 699 ## COG3542 Uncharacterized conserved protein 18 8 Tu 1 . + CDS 21519 - 21917 488 ## COG3607 Predicted lactoylglutathione lyase - Term 21767 - 21804 3.1 19 9 Tu 1 . - CDS 21977 - 22873 1101 ## COG1284 Uncharacterized conserved protein - Prom 22899 - 22958 7.0 20 10 Tu 1 . - CDS 23272 - 23772 482 ## COG1335 Amidases related to nicotinamidase - Prom 23801 - 23860 5.7 + Prom 23745 - 23804 4.2 21 11 Tu 1 . + CDS 23943 - 26213 2684 ## COG2918 Gamma-glutamylcysteine synthetase + Term 26224 - 26269 8.6 + Prom 26250 - 26309 6.2 22 12 Op 1 . + CDS 26365 - 26436 79 ## 23 12 Op 2 . + CDS 26402 - 26503 147 ## + Term 26591 - 26639 7.6 + Prom 26605 - 26664 6.1 24 13 Op 1 . + CDS 26798 - 26869 79 ## 25 13 Op 2 . + CDS 26835 - 26936 149 ## + Term 27020 - 27070 10.5 - Term 27012 - 27051 6.0 26 14 Tu 1 . - CDS 27118 - 27570 653 ## COG5506 Uncharacterized conserved protein - Prom 27695 - 27754 5.0 + Prom 27560 - 27619 3.4 27 15 Op 1 . + CDS 27687 - 27758 85 ## 28 15 Op 2 11/0.000 + CDS 27755 - 28702 1036 ## COG4606 ABC-type enterochelin transport system, permease component 29 15 Op 3 10/0.000 + CDS 28699 - 29664 626 ## COG4605 ABC-type enterochelin transport system, permease component 30 15 Op 4 5/0.000 + CDS 29661 - 30416 269 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 31 15 Op 5 . + CDS 30455 - 31408 1252 ## COG4607 ABC-type enterochelin transport system, periplasmic component 32 16 Op 1 . + CDS 31985 - 33628 1789 ## COG4166 ABC-type oligopeptide transport system, periplasmic component 33 16 Op 2 . + CDS 33650 - 34870 1347 ## COG2195 Di- and tripeptidases + Term 34872 - 34924 16.2 + Prom 34877 - 34936 3.0 34 17 Op 1 . + CDS 34956 - 35513 281 ## PROTEIN SUPPORTED gi|116511539|ref|YP_808755.1| SSU ribosomal protein S5P alanine acetyltransferase 35 17 Op 2 . + CDS 35548 - 36159 809 ## COG4493 Uncharacterized protein conserved in bacteria + Term 36222 - 36287 20.0 + Prom 36400 - 36459 4.6 36 18 Op 1 . + CDS 36525 - 36887 269 ## EF3076 cell wall surface anchor family protein 37 18 Op 2 . + CDS 36874 - 38761 1313 ## EF3075 hypothetical protein Predicted protein(s) >gi|307679232|gb|GL457015.1| GENE 1 466 - 1296 259 276 aa, chain + ## HITS:1 COG:lin0043 KEGG:ns NR:ns ## COG: lin0043 COG2972 # Protein_GI_number: 16799122 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Listeria innocua # 1 269 162 430 431 152 31.0 9e-37 MIIYYTSLILGKYLGNNKEIIVVNSIFLTLYLVVSLISFIVYLSSLKNKYDIQQKETEYL ENQRYMEAMEKQFKEIRKFRHDYKNILNSLEDFIVSGDYESLNDYYFSKIKKASKCIDQN GFKLEAIGNIRVREVKSLLVSKLISTQEKGMDVQLEVTEPIEELAIDSISLVRILGVFLD NSIEEIEFLGEGKLVIAVYKDASAVHIIIQNSCRKNLPKFHLLKQRGFSLKGTDRGMGLS NVQELLQSLNNVQLATSISDGWFTQKLTIENNRRCE >gi|307679232|gb|GL457015.1| GENE 2 1298 - 2017 491 239 aa, chain + ## HITS:1 COG:CAC0081 KEGG:ns NR:ns ## COG: CAC0081 COG3279 # Protein_GI_number: 15893377 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Clostridium acetobutylicum # 1 239 1 239 241 204 45.0 1e-52 MISIIICEDDWRQRQMLETYVKNYIMMESLDMELVFSTGNPLEVLEFVKSQSRIIGLYFL DVDLQHEMSGLTLAAKIRDYDNLGKIVFVTTHGELSYLTFTYKVEALDYIIKDNKEHLQQ KICENIQLAHERITSERGDTKKLFKFKDGDTIRSVDMTTIIFFESSSVSHKIVLHLENGE IEFYGSLKEIEEQSNDFYRCHKSYLINRKHISKVIKSERIVEMSNGERCLVSVRAMKNL >gi|307679232|gb|GL457015.1| GENE 3 2229 - 2591 638 120 aa, chain + ## HITS:1 COG:lin1929 KEGG:ns NR:ns ## COG: lin1929 COG1302 # Protein_GI_number: 16800995 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 120 1 120 121 142 64.0 1e-34 MAVKIQTPAGTIEITNDVIATVVGGAATDIYGIVGMASKNQIKDNLNDILRRENYSRGVV VRQEDNGIAVDVYTIVSYGTKISEVSRNVQEKVKYNLETLLGVTANSVNVFVQGVRVLPD >gi|307679232|gb|GL457015.1| GENE 4 2674 - 4350 2241 558 aa, chain + ## HITS:1 COG:SP0443 KEGG:ns NR:ns ## COG: SP0443 COG1461 # Protein_GI_number: 15900360 # Func_class: R General function prediction only # Function: Predicted kinase related to dihydroxyacetone kinase # Organism: Streptococcus pneumoniae TIGR4 # 3 558 1 555 555 645 62.0 0 MNVTEISAGQFQEMVQAGATRLHTNAEYVNSLNVFPVPDGDTGTNMNLSMTSGAKAVADS RSEKVGELAGALSKGLLMGARGNSGVILSQLFRGFSKQIPEVTTLNAKDLAAAFTHGVET AYKAVMKPVEGTILTVSREAARSGERKAKETDDCIEVMTAVVAGAKRALAKTPDLLPVLK EVGVVDSGGQGLLFIYEGFLEALSGEFLPTETYEPSPAEMDEMVNAEHHRGVSGHVATED IKFGYCTEIMVRIGEGPTVDSAFDYETFRNYLNELGDSLLVVNDDEIIKVHVHTEHPGEV MNYGQKFGSLVKIKVDNMRLQHETLVERDAQQEALTEKVRVPFAVIAIAAGEGVQKLFRS LGASYIISGGQTMNPSTEDILKAVKEVNAEQVIILPNNKNIFMAADQAAEVADVPVAVVP SKTISQGMTAMLAFNDQQSLEENKASMTEMLDSVVSGQVTTAVRDTTIDDVEIKKDDFLG MIDGKIVVSEADRFNASLDTLNRMIDEDTEIVTIIVGEDGSVEEAEKLIAILVSENDELE TELHEGGQPVYPYLFSAE >gi|307679232|gb|GL457015.1| GENE 5 4466 - 6502 2307 678 aa, chain + ## HITS:1 COG:SPy1785 KEGG:ns NR:ns ## COG: SPy1785 COG1200 # Protein_GI_number: 15675625 # Func_class: L Replication, recombination and repair; K Transcription # Function: RecG-like helicase # Organism: Streptococcus pyogenes M1 GAS # 1 671 1 668 671 757 56.0 0 MDITDLVSVLPGVGPKRAENLQELGIATIEDLLTYYPFRYDDIQEKDLSEIQDQEKVTLK GLVVSEAVVSRYGYKKSRLTFRMMQEHAVINVSFFNQPFLKDKVVLSEEIAVYGKWDAKR KSLNGMKILASKGDNEDFAPIYHVNKKVRQSTLVQLIRTAFEEYGSLVEEILPNDLLEKY RLMPRKEAMWAMHFPSNPEESHQAKRRVVFEEFFLFQLKMQGLKKQEKAEKNGLAIQYDV DRLKTFTQGLPFELTGAQKKVTNEICRDLRSPKHMQRLLQGDVGSGKTVVAAIALYATMT AGFQGALMVPTEILAQQHMESLQQLFDPLEVRTALLTGSTKTKERRLILEELANGEIDIV VGTHALIQQDVSFHQLGLVITDEQHRFGVNQRKILREKGLKPDVLFMTATPIPRTLAITA YGEMDVSIIDEMPAGRIPIETRWIRPPQLDTVLEWMEKELARGHQAYIICPLIEESEALD VKNATEIFEHMQSFYSPRYQVGLLHGKMKNQEKDDIMQEFKDNQLQLLVSTTVIEVGVNV PNATVMLIMDADRFGLAQLHQLRGRVGRGSSASYCILVANPKNEMGVERMKIMTETTNGF VLSERDLELRGPGEVFGARQSGVPQFAVGDIVTDFNILEVARQEASALWQVKEWWQYPAY QGLANRVKPQDEAAQFFD >gi|307679232|gb|GL457015.1| GENE 6 6605 - 7606 1287 333 aa, chain + ## HITS:1 COG:SP0037 KEGG:ns NR:ns ## COG: SP0037 COG0416 # Protein_GI_number: 15899983 # Func_class: I Lipid transport and metabolism # Function: Fatty acid/phospholipid biosynthesis enzyme # Organism: Streptococcus pneumoniae TIGR4 # 2 331 3 330 330 427 69.0 1e-119 MKIAVDAMGGDNAPQAIVEGVMLAKQDFPDIEFQLYGKEAEIKKYITDEKNITIIHTNEK IASDDEPVKAIRRKKTASMVLAAQAVKNGEADAIFSAGNTGALLAAGLFIVGRIKNVERP GLMSTLPVMGEPDKGFDMLDLGANADNKPEHLVQYAVLGSFYAEKVRNVQNPRVGLLNNG TEETKGSELTKKAFELLAADETINFVGNVEARELLNGVADVVVTDGFTGNAVLKSIEGTA MNMMSLLKTAILSEGVKGKMGALLLKNALRGMKDEMDYSKHGGAVLFGLKAPVIKTHGAT GPDAVRYTIRQIHTMLETQVVPQLVEYYEGKAE >gi|307679232|gb|GL457015.1| GENE 7 7743 - 7982 419 79 aa, chain + ## HITS:1 COG:lin1920 KEGG:ns NR:ns ## COG: lin1920 COG0236 # Protein_GI_number: 16800986 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Listeria innocua # 5 79 3 77 77 61 57.0 5e-10 MTREEVLQKVAKIISNHFDIEADQVTDQLNIKDDLNADSISVMEFVLELEDEFGTEISDE DAEKIETVGAAVDYIVSNS >gi|307679232|gb|GL457015.1| GENE 8 8279 - 9286 602 335 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 4 324 8 328 329 236 40 2e-61 MQGNEQLLEVSGLETAFRIKDDYYNAVDDVSFELKKNEILAIVGESGCGKSTLATTIMGL HDPNHTKITGEILYNNLNLTTFNETLYNKVRGNDIGMIFQDPLSALNPLMRIEDQIKESL TYHTKMTAQQKQARAIELLDQVGIPNPERVGKQYPHELSGGMRQRVIIAIAIACKPPILI ADEPTTALDVTIQAQILDLLKDLQEETGSGIILITHDLGVVAEMADRVAVMYAGQFVEVA TAEELFSHPKHPYTRSLLQSIPQENSDEEELHVIEGIVPSLTKLPRKGCRFAPRIPWIDA SEHEENPTLHEVAPNHYVRCTCYKHFHFRDGEGEA >gi|307679232|gb|GL457015.1| GENE 9 9286 - 10230 1153 314 aa, chain + ## HITS:1 COG:L92192 KEGG:ns NR:ns ## COG: L92192 COG4608 # Protein_GI_number: 15673822 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, ATPase component # Organism: Lactococcus lactis # 1 312 1 312 319 415 64.0 1e-116 MTEIIQIKDLKVHYPIRSGFFNRITDHVLAVDGVDFMIEQGKTYGLVGESGSGKSTTGKA IIGLEKITNGEIIYQGQDVTKPRSRKAIGYNKDVQMIFQDSMSSLNPKKRVLDIIAEPIR NFERLSDQEEKKKVKSLLDIVGMPEDALYKYPHEFSGGQRQRLGVARAVATSPKLIIADE PVSALDLSVQAQVLNFMKNIQQEYGLSYLFISHDLGVVKHMCDNIAIMYKGRFVEIGTRQ DIYTNPQHIYTKRLLSAIPKIDVANREAHKEERRRVEQEYRENHKDYYDENGRVYNLHAI SPTHQVALKNGGAE >gi|307679232|gb|GL457015.1| GENE 10 10230 - 11192 1071 320 aa, chain + ## HITS:1 COG:BH3638 KEGG:ns NR:ns ## COG: BH3638 COG0601 # Protein_GI_number: 15616200 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus halodurans # 1 320 1 322 322 348 51.0 5e-96 MWKTILRRLLLMIPQVIILSVLIFLLAKMMPGDPFTGLINPNQDPKVIEAMREAAGLNDP WYEQYFRWIGNALHGDFGHSFIFKLPVSTLIAGRVGNTIALAAVSVIITYLIAIPFGLIA GRYQNSWFDKMVVIYNFFSFAVPLFIFALIMLFIFGYRLDWFPTSGTVTVGLAEGTWPYY LDKLKHLILPGVTQALLGTAVTIQYLRSEVIDVKNMDFVRTARSKGVPTNKIFNRHIFRN AALPIASQLGYEITALIAGSVVIEKIFAFPGIGKLFIDSIIQRDYSVITALVLILGLATL IGTLISDIVMSIVDPRIRIQ >gi|307679232|gb|GL457015.1| GENE 11 11220 - 12143 1094 307 aa, chain + ## HITS:1 COG:BH3637 KEGG:ns NR:ns ## COG: BH3637 COG1173 # Protein_GI_number: 15616199 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus halodurans # 18 307 19 302 302 301 57.0 8e-82 MELTEEKREEVLQESIPPMGFRMIAREFVKEKMAMFSLILLVIILLAVFIGSLVLDQSAV MHVSILDKYAEPGTVTMNGTKFILGADEGGRDVLGQLIIGARNSILIGFAITIITSIIGV GLGIISGYYGGMIDNILMRIVDFIMILPIMLIIIVFVSVIPKYSIWSFIWIMCAFYWVGK ARLFRSKTLSEGRRDYVSASKTMGTSDFKIMFREIMPNLSSLIITNLTINFAANIGIETT LTFLGFGLPQSVPSLGTLIGYASSGDVLVNKQWVWLPASILILVLMLSINYVGQAFKRSA DARQRLG >gi|307679232|gb|GL457015.1| GENE 12 12172 - 13950 2432 592 aa, chain + ## HITS:1 COG:BH3636 KEGG:ns NR:ns ## COG: BH3636 COG0747 # Protein_GI_number: 15616198 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Bacillus halodurans # 45 575 64 588 610 487 46.0 1e-137 MNKKRILGAITLASVLVFGLAACGGGNKGGGNKATETEDISKMPIAVKNDKKAIDGGTLD VAVVMDTQFQGLFQREFSQDAYDSTYMDPAAQSLFNNDADFKIVDGGAANLILDEDANTA TIKLRDNLKWSDGKDVTADDVIFSYEVIGHKDYTGIRYDDNFTNIVGMEDYHAGKSPTIS GIEKINDKEVKISYKEVHPGMQQLGGGIWSSALPKHTFEGVSVKEMESSDGVRKNPVTFG PYYMSNIVTGESVEYLPNEYYYGGKPKLDKLVFKSVPSASIVEAMKAKQYDMAFSMPTDT YPTYKDTEGYQILGRPEQAYTYIGFKMGTFDKETNTVKYNPKAKMADKSLRQAMGYAIDN DAVGQKFYNGLRTNATTLIPPVFKSLHDSEAKGYTLDLDKAKKLLDDAGYKDVDGDGIRE DKEGKPLEIKFASMSGGETAQPLADYYVQQWKEIGLKVTYTTGRLIDFQAFYDKLKNDDP EVDIYQAAWSTGSDPSPTGLYGPNSAFNYPRFESEENTKLLDAIDSKASFDEEKRKKAFY DWQEYAIDEAFVIPTLYRNEVLPVNDRVVDFTWAVDTKDNPWATVGVTAEKR >gi|307679232|gb|GL457015.1| GENE 13 14280 - 14972 820 230 aa, chain + ## HITS:1 COG:lin1919 KEGG:ns NR:ns ## COG: lin1919 COG0571 # Protein_GI_number: 16800985 # Func_class: K Transcription # Function: dsRNA-specific ribonuclease # Organism: Listeria innocua # 8 228 6 226 229 257 58.0 1e-68 MDNQLTTELKERYGIVFHDVNLLEQAFTHSSYVNEHRYLKLSDNERLEFLGDAVLELIVS QYLYLKFPELPEGKLTKMRAAIVREDSLAKFAKECHFDNYILLGKGEEASGGRTRASLLC DLFEAFLGALYLDQKVGAAKKFIEDVIFPKIDAGAFSHEMDHKTQLQEVLQRKGDVSIEY RLIKEEGPAHDRTFFTEVYMNGELIGLGQGKSKKLAEQDAAERALKSIPQ >gi|307679232|gb|GL457015.1| GENE 14 14993 - 18571 4534 1192 aa, chain + ## HITS:1 COG:lin1918 KEGG:ns NR:ns ## COG: lin1918 COG1196 # Protein_GI_number: 16800984 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Chromosome segregation ATPases # Organism: Listeria innocua # 1 1184 1 1183 1186 873 47.0 0 MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLKYKQRKKKAEQK LFETEDNLSRVQDIIYELEDQLVPLAAQADAAKKYLALKEELTEIDVNLTVTEIQEAKAI WETKTQELTAIEEKLASASKQVHDLEGKLVRLRSKRNRLDEQIETEQQQLLQVTEALKQA EGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREELQTLETAIAEKTAQRQTLKEAL ALATKDVEKYSKSSKELMEELRSQYVEVMQEQANTANDLKYLERQYQQETAKNQQSLAKH EALEEQMVEALAMKETLEKEQKVAKQGLQEQLEEYTALKATLEAKRERLAQRQNDMYQAM NQVQQAKARQKSLQEIQENYAGFYQGVKAVLRHKNQLTGIVGAVAELIEVPKEYTLAIET ALGGAAQHIVVENEKDGRAGITFLKQQHSGRATFLPLTTIKPRSVSAMVQNRLAGAPGFV GIASELVRYPEQVQTVIQNLLGVTILAADLTSANQLAKLVNYQYRVVSLEGDVMNPGGSM TGGANKRGNQGSLFSQAQELQTITEQMTQLETQLRSVEQEVQALSQEVKTATERAEMLRS AGEQNRLKQQEIDNKLANQTETITRLTKEKRLFEYESRELHQFLTEYQTKKATLTEQQAN LTATKERLDAEMKQVEQEASQMETFKAQAQERLTTVQAEQAVAAEQCAHFARQKQDKQEQ LDELLIRETAIRQQLQQLSSHSSDHQLTEEGLAAQVAQLAEKQTALQTSLQTARSQRQAL QEEVDELDTKLAEENKRQQQYLADKTQIEVLKNRAEMQLDSSLSYLQEEYSLTFEAAYEA YFPIDDLAQAQQTVKRLKQEIERLGPVNLSAIEQFEQVDERHQFLVSQRDDLLNAKEQLF ETMDEMDQEVKERFKEVFEAIRGQFKVVFPNMFGGGRAELVLTNPEDLLNTGIEIEAQPP GKKLQHLSLLSGGERALTAIALLFSIIRVRPVPFCILDEVEAALDEANVARFGHYLSEFE DGTQFIVVTHRKGTMEAADVLYGVTMQESGVSKIVSVRLEEVKEGGAIEKSN >gi|307679232|gb|GL457015.1| GENE 15 18596 - 19423 1110 275 aa, chain + ## HITS:1 COG:L22687 KEGG:ns NR:ns ## COG: L22687 COG0561 # Protein_GI_number: 15672793 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Lactococcus lactis # 2 268 5 269 269 246 50.0 5e-65 MIKLVAIDLDGTLLNSQKEISLRNKQALMAAKQAGVKVVICTGRPLAAIGPYLEELGLQE EGDYSITFNGGLVQKNDTGAIIEKTLMPLEAIHELYQLATTLNMPFDVLSDEVVMQLPSA PNYPSIYSSLNKLLTFESYKLEELTPNRIYNKVVVAIDEAYLNERIKEIPASFYERFEII KTRNNLLEFMPKGITKAYGISLLAKDLGIRAEEIMTLGDEENDLPMIEYAGLGVAMANAI PLVKEAADVVTDTNDQDGVAKAVEKYILTPLEGGQ >gi|307679232|gb|GL457015.1| GENE 16 19426 - 20754 1005 442 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 [Bacillus selenitireducens MLS10] # 127 441 13 326 336 391 62 1e-108 MGFFDKIKKAFSAEKKEEEKQEIIEETVDETPSDESAPAESKETAAEEAQTTPETTAEEV TETADLTDNAEMEKLAGVEEALEEEPEEILTEETQEVVVEAPEEESSVVTPLAEPTDTQV SEEIEESKEEQVQEKYEKGLEKTRKTFGQRLNELFANFRSVDEDFFEELEETLIGADVGF DTSLKITEALRQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINLQPNGLTVILF VGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAGVEVVRGNAGG DPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREIPDAPHEVLLV VDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPVKLVGLGEGIN DLEPFNANDFAMGLFKGLLKDV >gi|307679232|gb|GL457015.1| GENE 17 20914 - 21399 699 161 aa, chain + ## HITS:1 COG:SP2081 KEGG:ns NR:ns ## COG: SP2081 COG3542 # Protein_GI_number: 15901897 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 7 155 2 150 153 155 58.0 3e-38 MTEQMWIEKLGLEAHPEGGYFKQTNKSEQLIPTKRGERALHTAILFLLNTESPSHFHRLK ADELWFFHDGQPLTVHCIFPDGTYQAVQLGKDLVQGQQLSFSVPAGTIFGSTVATGFALV SCVVTPGFEFEDFELFTQAELLNDYPQHSEIIQHLAYRELP >gi|307679232|gb|GL457015.1| GENE 18 21519 - 21917 488 132 aa, chain + ## HITS:1 COG:L151700 KEGG:ns NR:ns ## COG: L151700 COG3607 # Protein_GI_number: 15673301 # Func_class: R General function prediction only # Function: Predicted lactoylglutathione lyase # Organism: Lactococcus lactis # 1 130 1 130 137 161 60.0 3e-40 MGTMVFVNFPVADVQRSTAFYEKLGFKKNEEFSTEEASSMMWDDQFWIMLLNHDFYGKFI QEKQIIDAQTTSGALISFSLESAEAVKQFGETAKANGGNCYRVDMGIPEEQMYGLEVQDL DGNSLEPVWMKM >gi|307679232|gb|GL457015.1| GENE 19 21977 - 22873 1101 298 aa, chain - ## HITS:1 COG:SPy2209 KEGG:ns NR:ns ## COG: SPy2209 COG1284 # Protein_GI_number: 15675941 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pyogenes M1 GAS # 8 282 3 277 290 229 48.0 5e-60 MNKFFTAQRLKDTAYVTVGAFILAISINAVLLPNKLVAGGANGISIVINYVFGISPAIVL YAINIPLLVLCFLLLGKEVGVKTIYGSLIYPFFVGITSGMPVLTHNIFLATLFGGIITGA GLGLVFRGNASTGGTAIISQIVNKYFKVSLGIAILFVDGLVILSAMYAFNADIVLFSLIC LFTIGRVVDMIQVGLVRSKNVMIISPKYVAIQERLLRELDKGVTLVPIEGGYRSAKGMLL MTVIREKDFPRLKEAILEIDEEAFLISMSASEVYGKGFSLKKVADSYGVEATNANNLQ >gi|307679232|gb|GL457015.1| GENE 20 23272 - 23772 482 166 aa, chain - ## HITS:1 COG:L125244 KEGG:ns NR:ns ## COG: L125244 COG1335 # Protein_GI_number: 15674036 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Lactococcus lactis # 5 164 18 175 176 135 44.0 4e-32 MKNRALLLIDFQKGIESPTQQLYRLPAVLEKVNQRIAVYRQHHAPIIFVQHEETELAFGS DSWQLFEKLDAQPTDFFIRKTHANAFYQTNLNDLLTEHDIQTLEIAGVQTEFCVDTTIRM AHGLGYTCLMTPKTTSTLDNGHLTAAQIIQHHEAIWAGRFLTFLSL >gi|307679232|gb|GL457015.1| GENE 21 23943 - 26213 2684 756 aa, chain + ## HITS:1 COG:PM1048_1 KEGG:ns NR:ns ## COG: PM1048_1 COG2918 # Protein_GI_number: 15602913 # Func_class: H Coenzyme transport and metabolism # Function: Gamma-glutamylcysteine synthetase # Organism: Pasteurella multocida # 21 480 21 481 481 389 46.0 1e-107 MNYRELMQKKNVRPYVLMARFGLEKENQRSTREGLLATTDHPTVFGNRSYHPYIQTDFSE TQLELITPVANSGTEMLRFLDAIHDVARRSIPEDEMLWPLSMPPQLPTKDEEIKIAKLDQ YDAVLYRRYLAKEYGKRKQMVSGIHFNFEYDQALIQQLYDEQSEVTDCKQFKTKVYMKVA RNFLRYRWLITYLFGASPVSEDGYFRVYDDQPQEPIRSIRNSTYGYRNHDNVKVSYASLE RYLEDIHRMVENGLLSEKKEFYAPVRLRGGKQMSDLPKTGIRYIELRNLDLNPFSRLGIV EDTVDFLHYFMLYLLWTDEKEEADEWVKTGDILNEQVALGHPHETIKLIAEGDRIFSEMI DMLDALGIRKGKEVVGKYYQQLRNPQDTVSGKMWTIIQENSNSELGNIFGNQYQSMAFER PYQLAGFREMELSTQIFLFDAIQKGLEIEILDEQEQFLKLQHGEHIEYVKNANMTSKDNY VVPLIMENKTVTKKILSAAGFHVPGGEEFSSFIEAQEAHLRYANKAFVVKPKSTNYGLGI TIFKEGASLEDFTEALRIAFKEDTAVLIEEFLPGTEYRFFVLDNDVKAIMLRVPANVTGD GKHTVEELVAAKNSDPLRGTNHRAPLELIQLNDLEKLMLKEQGLTIYSVPEKEQIVYLRE NSNVSTGGDSIDMTDVIDDSYKQIAIEAVAALGAKICGIDLIIPDKDVKGTRDSLTYGII EANFNPAMHMHVYPYAGQGRRLTMDVLKLLYPEVVQ >gi|307679232|gb|GL457015.1| GENE 22 26365 - 26436 79 23 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MCIRCTLTKGAFFVNRSGIGIDD >gi|307679232|gb|GL457015.1| GENE 23 26402 - 26503 147 33 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSIEAALELMISFAAFVALLIFGILEATKNDKK >gi|307679232|gb|GL457015.1| GENE 24 26798 - 26869 79 23 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MCIRCTLTKGAFFVNRSGIGIDD >gi|307679232|gb|GL457015.1| GENE 25 26835 - 26936 149 33 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSIEAALELMISFAAFVALLIFGILEATKNNKK >gi|307679232|gb|GL457015.1| GENE 26 27118 - 27570 653 150 aa, chain - ## HITS:1 COG:BS_yueI KEGG:ns NR:ns ## COG: BS_yueI COG5506 # Protein_GI_number: 16080228 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 124 1 122 132 72 32.0 2e-13 MANDDLQQRLDKGMYGTPLVNPEEQHKYMGTFRERCRLSMTVAEMKDAQNQKHLLEELAK HPEVTVLLNGEISSDLQSTYIKLLNQHGATFKIVNNFVENNPDSLGLLLAEKHAVDEPVI DVTEKYPQATETPKEEPTAKKGFWQKLFQS >gi|307679232|gb|GL457015.1| GENE 27 27687 - 27758 85 23 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVFSYTVTKNENHSQLNKNGVFS >gi|307679232|gb|GL457015.1| GENE 28 27755 - 28702 1036 315 aa, chain + ## HITS:1 COG:BH1025 KEGG:ns NR:ns ## COG: BH1025 COG4606 # Protein_GI_number: 15613588 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type enterochelin transport system, permease component # Organism: Bacillus halodurans # 1 314 1 314 317 277 51.0 2e-74 MKKIGLFVLLLLFSLLSLVIGVKDIALSQLFQLDAQQQFVLFTTRVPRTLSLIIAGSTMS ISGLIMQQLTQNKFVAPSVAGTTDSARLGILVAMLFFPTAPFLYRTAIAFIFALSGTLLF LALIRLLPSKNQVMVPLVGVMFGNILGSIATFFAYQYQLVQNMSAWLQGNFSTVMKGNYE WLFLMIPLWFVIYLFAYHFTVVGMGEAFANSLGVHYQRIQFLGLTLVALASAIVLLMVGN IPFLGVVIPNLVSLRYGDHMKNTLWLTGICGSLFLLICDILARVLIAPYEIPVSVVVGTL GSILFILLLLRGRKQ >gi|307679232|gb|GL457015.1| GENE 29 28699 - 29664 626 321 aa, chain + ## HITS:1 COG:BS_yclO KEGG:ns NR:ns ## COG: BS_yclO COG4605 # Protein_GI_number: 16077449 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type enterochelin transport system, permease component # Organism: Bacillus subtilis # 12 318 7 313 315 209 41.0 5e-54 MKRPLKKWLSLLLLLAAVVIVSLCYLTYNTYGNWSFALALRGKKLLAFIFVGIAAAFSTI SFQTVTQNHFLTPNILGMDSLYVFVQTVLFFLLGGAQALGQVSLGSFLMNVFLMVFLSTS LSYFLLRKNQSDLFLLLMIGMILGTFFSSISTFLQVIMDPNEYDLLQGKLFASFGNVNSQ YLVFVGVAVLMICGILWRESYRLDVLHLGNHQAQNLGIAVNQFQLVLLCLISSLVGLSTA LVGPITFLGFIVANMSYQFMKTYRHRELFVAGSLIAVFLLVFGQLMVEQVFHLNTPLSVV IQFVGGVYFIWKIIAERKQRT >gi|307679232|gb|GL457015.1| GENE 30 29661 - 30416 269 251 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 223 1 226 245 108 28 6e-23 MIQMSDVSKKYGDKFVVSDIDLPISEGKLTAFIGPNGAGKSTLLAMMSRLIPKDTGEIYL DKQEVKTWKQSAFSQKIALLKQANGVQLKLTVRELVNFGRFPYSKGRLKSADHEKVTEAL EQLGLTEMAEEYIDTLSGGQLQRAYIAMILAQDTDYILLDEPLNNLDMNYAVQMMQILKR SVDELGKTILIVLHDINFAASYADEIVAMKGGKLYAHGATEEVIQTSILNDLYEMNIRIC EIEGKRFCLYH >gi|307679232|gb|GL457015.1| GENE 31 30455 - 31408 1252 317 aa, chain + ## HITS:1 COG:BS_yclQ KEGG:ns NR:ns ## COG: BS_yclQ COG4607 # Protein_GI_number: 16077451 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type enterochelin transport system, periplasmic component # Organism: Bacillus subtilis # 3 317 2 316 317 271 49.0 2e-72 MKKKFLAMMAVSMMGLLMLSACQTNKKTADSATTETTAKTEVTVKDTNGQLTVPKNPKKV VVFDNGSLDTMDALGVGDRVVGAPTKNIPAYLKKYQKVESAGGIKEPDLEKINQLKPDLI IISGRQQDYQEQLKAIAPTIYLAVDAKNPWASTKQNIETLGTIFDKEEVAKEKITGLEKE IADVKKQAEASANNALVVLVNEGQLSAYGKGSRFGLIHDTFGFKAADDKIEASTHGQSVS YEYVLEKNPGILFVVDRTKAIGGDDSKDNVAANELIQKTDAGKNDKVIMLQPDVWYLSGG GLESMHLMIEDVKKGLE >gi|307679232|gb|GL457015.1| GENE 32 31985 - 33628 1789 547 aa, chain + ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 2 545 4 548 549 384 38.0 1e-106 MKLGKKVVGLIATGFLLAACGGTKEAAEKVDSGNLAAEQKISISSPAPISTLDTTQTTDK NTFTMAQHLFEGLYRFDDDSATVPALAKDVKISDDGRKYHFTLREGIKWSNGEPITAQDF VYSWKKLVTPATIGPNAYLLDSVKNSFEIRNGEKSVDELGISAPNDKEFIVELKQAQPSF LAVVSIAWLAPQNQKFVEAQGKDYALDSEHLLYSGPFTLANWDATSDTWTLKKNPEYYDA DQVKLEEVAVSTIKEDNTGINLYQANELDLVRINGQYVQQYQDDPGYVSHPDVANYFLDF NKKEGTPLANVHLRKAIGQAIDKEALTQSVLNDGSKPLNGLIPSKLYANPETDEDFRAYS GEYLKNDVKKAQAEWTKAQADVGKKVKLSLLAADTDQGKRIAEYVQSQLQENLPGLEITI SSQPSNNVNQSRREKNYELSLSGWIAGSSELDSYFNLYAGESSYNYGNYHNAKYDQLVED ARTINANNPEKQFAEYKEAEDILLNQDAAQVPLYQSASNYLINPKLKGISYHLYGDYFHL RNAYLTE >gi|307679232|gb|GL457015.1| GENE 33 33650 - 34870 1347 406 aa, chain + ## HITS:1 COG:FN0733 KEGG:ns NR:ns ## COG: FN0733 COG2195 # Protein_GI_number: 19704068 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Fusobacterium nucleatum # 4 405 9 410 412 454 54.0 1e-127 MEKLVERFLTYVKVNTRSDANSQTTPTTVGQVVLAKMIETELHELGLADVHYNEQNGFLT ARLPGNQPAAKSIGLIAHLDTADFSAENIRPQVITNYDGQDVLLNQEQGIVLSVAEFPNL KEYQGETLITTDGTTLLGADDKAGIVEILATVEYFLAHPEVARGDVWLAFGPDEEIGRGA DQFDAPNFPVAFAYTIDSGRVGHFEYETFNAAQAVITIEGTSVHPGTAYGSLVNAIKLGE QLDQSLPQKEVPEQTRGNEGFYLLNKFTGSIEKAELVYIIRDHDQENFQARKQFLEKQVQ RLNALADKPRLTITFQDQYYNMKEIIEKDWTPVELAVQAMESCDIEPIITPFRGGTDGSK ISFMGIPTPNLFTGGENFHGQYEFITVESMAKAVQTIIAIIRLNAN >gi|307679232|gb|GL457015.1| GENE 34 34956 - 35513 281 185 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116511539|ref|YP_808755.1| SSU ribosomal protein S5P alanine acetyltransferase [Lactococcus lactis subsp. cremoris SK11] # 1 151 1 145 186 112 40 3e-24 MNYPLIFAENQRIETERLILRPVTLADAEDMYEYASDEETVRYVFLKNQTIAETRQNIAK FFMGEPLGKYGIEVKETGKMIGTIDLRVNETNNIGELGYVLNRAFWGNGYMPEAATALVE LGFAKMKLMRIFALHDQDNPASGRVMEKIGFTYEGTLPNARISKGKIVTDVYRGMTLETW QNRQK >gi|307679232|gb|GL457015.1| GENE 35 35548 - 36159 809 203 aa, chain + ## HITS:1 COG:lin1053 KEGG:ns NR:ns ## COG: lin1053 COG4493 # Protein_GI_number: 16800122 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 4 201 6 203 204 160 41.0 1e-39 MLMFTEKEFAAFEVAGLDERMAVIRAQIQPIFQELDTYFAEQLAPELGTELFVHIAQHRR RTVYPPENTWSALSPNKRGYKMQPHFQLGIWGDYVFMWLSFIDNPKNEKQIAQAFLENQQ LFQALPEDTYVSLDHTVPQITPLPETDLEKALTRFRDVKKGEFEIGRIIPKDSDLWQNPE KARAYMLATYQQLLPLYQLAVAQ >gi|307679232|gb|GL457015.1| GENE 36 36525 - 36887 269 120 aa, chain + ## HITS:1 COG:no KEGG:EF3076 NR:ns ## KEGG: EF3076 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 120 1 120 120 198 95.0 7e-50 MKKKRYLIIACLLFSPSFFINVEASDGGSSSVGIEFYQNPRTPAPKDAPPKTDAPAADPK EPAGPPKGDQRSGGSTQTTTTGSQLPRTGSKSQANLSILGLVLIGLVGMVQRKKGRHEAN >gi|307679232|gb|GL457015.1| GENE 37 36874 - 38761 1313 629 aa, chain + ## HITS:1 COG:no KEGG:EF3075 NR:ns ## KEGG: EF3075 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 629 1 630 1426 1007 92.0 0 MKQTKWQRLATIGLCSSLVINAFSGATAVAEESSPTVASSAKEATSASSATPESTESSQE TTETSREEVTQETVEQEDTTEIAQEENLLEPSGIQAKIMPRAFVWAATGTTNRTTVRLND VVDYRMKLENITTDDTNSDIVGPIRIESKLAAGMTRPTSVIIKVGPEEQNVVIGEGSHNA NSGGEYFVWTESTRTVTAFINRLHGRTSGNTGYIKTLYFQTRITSGTHNEKKYIDSTIRF NGFGAVNRRNEMTYVDRFSGNLGLKGNLKFYDEDGVASKEQMSLSINPVLFKSTNSRVEG TLLRYPLTMTNAGSGLYRFDTGLKNIGTSNGGSWFFFSNDIAINFATATTNRIDKIVLAP PKATLPDSRTGVMTSRAYTSTTYTRSNYDISTYNFTKATGKTWRITNRSSNSGVSTNIMF SDNLVGTTGQFNKGNSGATINYYIYYKKLYENFVNSNGQKITPPSGFTQGKRTVINSEAY TFKQSGTLPDTYQADGKTYKFKGWYKGKTKPNTLTTTKTPSYPVTYDDNDDLNVVYEEIK VLEFPSRTYQFGFVDESGKRVDASTIDLTYDSWYGIGTEPPNNIPSAWATTKIETGIKAN TKNNLKEITYPVQSLETNSKDSFQFSAVN Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:32:08 2011 Seq name: gi|307679231|gb|GL457016.1| Enterococcus faecalis TX2141 genomic scaffold Scfld70, whole genome shotgun sequence Length of sequence - 30041 bp Number of predicted genes - 33, with homology - 31 Number of transcription units - 20, operones - 8 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 50 - 145 142 ## + Term 154 - 206 11.0 + Prom 164 - 223 3.8 2 2 Tu 1 . + CDS 289 - 375 95 ## + Prom 403 - 462 7.8 3 3 Tu 1 . + CDS 529 - 729 358 ## COG1278 Cold shock proteins + Term 748 - 781 3.1 - Term 774 - 821 11.4 4 4 Op 1 7/0.000 - CDS 835 - 2520 1684 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 5 4 Op 2 . - CDS 2522 - 2734 247 ## COG5503 Uncharacterized conserved small protein - Prom 2778 - 2837 7.4 - Term 2831 - 2867 -0.4 6 5 Tu 1 . - CDS 3012 - 3425 168 ## COG2832 Uncharacterized protein conserved in bacteria - Prom 3445 - 3504 4.1 7 6 Op 1 35/0.000 + CDS 3654 - 5381 239 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 8 6 Op 2 . + CDS 5378 - 7147 186 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 + Term 7190 - 7243 9.1 + Prom 7174 - 7233 3.2 9 7 Op 1 . + CDS 7390 - 7881 462 ## COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily 10 7 Op 2 . + CDS 7898 - 9046 1397 ## COG0381 UDP-N-acetylglucosamine 2-epimerase + Term 9055 - 9100 2.5 + Prom 9048 - 9107 2.2 11 8 Tu 1 . + CDS 9145 - 9798 720 ## COG0546 Predicted phosphatases + Prom 9913 - 9972 11.0 12 9 Op 1 3/0.000 + CDS 10006 - 11391 1417 ## COG1559 Predicted periplasmic solute-binding protein + Term 11409 - 11454 9.8 + Prom 11501 - 11560 15.3 13 9 Op 2 . + CDS 11652 - 12131 746 ## COG0782 Transcription elongation factor + Term 12143 - 12180 2.0 + Prom 12203 - 12262 8.4 14 10 Op 1 7/0.000 + CDS 12282 - 13013 730 ## COG4758 Predicted membrane protein 15 10 Op 2 19/0.000 + CDS 13010 - 14113 870 ## COG4585 Signal transduction histidine kinase 16 10 Op 3 1/0.200 + CDS 14088 - 14720 820 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain + Term 14729 - 14794 17.6 + Prom 14737 - 14796 8.2 17 11 Op 1 . + CDS 14824 - 15489 860 ## COG0569 K+ transport systems, NAD-binding component 18 11 Op 2 . + CDS 15562 - 15873 574 ## COG4841 Uncharacterized protein conserved in bacteria + Term 15898 - 15934 -0.4 + Prom 15994 - 16053 7.6 19 12 Op 1 2/0.000 + CDS 16077 - 17015 1080 ## COG0463 Glycosyltransferases involved in cell wall biogenesis + Term 17024 - 17054 1.3 + Prom 17132 - 17191 3.6 20 12 Op 2 10/0.000 + CDS 17225 - 18295 1039 ## COG3839 ABC-type sugar transport systems, ATPase components 21 12 Op 3 38/0.000 + CDS 18295 - 19170 803 ## COG1175 ABC-type sugar transport systems, permease components 22 12 Op 4 . + CDS 19175 - 19993 794 ## COG0395 ABC-type sugar transport system, permease component 23 12 Op 5 . + CDS 19977 - 21266 1339 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 24 12 Op 6 . + CDS 21290 - 22570 1692 ## COG1653 ABC-type sugar transport system, periplasmic component + Term 22590 - 22648 12.0 25 13 Tu 1 . + CDS 22668 - 24221 1796 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases + Term 24237 - 24287 5.1 - Term 24217 - 24283 15.3 26 14 Tu 1 . - CDS 24348 - 25247 797 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases - Prom 25279 - 25338 5.8 - Term 25316 - 25366 15.4 27 15 Tu 1 . - CDS 25396 - 26406 1008 ## COG0492 Thioredoxin reductase - Prom 26536 - 26595 5.1 + Prom 26523 - 26582 6.0 28 16 Tu 1 . + CDS 26611 - 27201 896 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family + Term 27214 - 27274 13.0 + Prom 27241 - 27300 6.9 29 17 Tu 1 . + CDS 27366 - 27572 259 ## EF2896 hypothetical protein + Term 27576 - 27615 8.0 - Term 27564 - 27602 8.6 30 18 Tu 1 . - CDS 27606 - 28772 1197 ## COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities - Prom 28893 - 28952 7.6 + Prom 28769 - 28828 6.5 31 19 Op 1 . + CDS 28938 - 29324 187 ## PROTEIN SUPPORTED gi|86608329|ref|YP_477091.1| putative ribosomal protein S1 32 19 Op 2 . + CDS 29398 - 29760 357 ## EF2893 hypothetical protein + Term 29769 - 29815 12.1 - Term 29757 - 29802 10.3 33 20 Tu 1 . - CDS 29842 - 30000 97 ## gi|256618321|ref|ZP_05475167.1| predicted protein Predicted protein(s) >gi|307679231|gb|GL457016.1| GENE 1 50 - 145 142 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIEENPFEEEQEHCETIDEFVDEYFNDEWIE >gi|307679231|gb|GL457016.1| GENE 2 289 - 375 95 28 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGIQLLDHIIVGDSGYISLREENFFASE >gi|307679231|gb|GL457016.1| GENE 3 529 - 729 358 66 aa, chain + ## HITS:1 COG:lin1401 KEGG:ns NR:ns ## COG: lin1401 COG1278 # Protein_GI_number: 16800469 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Listeria innocua # 1 65 1 65 66 97 84.0 4e-21 MEQGTVKWFNAEKGFGFISREDGSDVFVHFSAIQGDGFKTLEEGQAVTFDVEDSDRGPQA VNVEKN >gi|307679231|gb|GL457016.1| GENE 4 835 - 2520 1684 561 aa, chain - ## HITS:1 COG:SPy1876 KEGG:ns NR:ns ## COG: SPy1876 COG0595 # Protein_GI_number: 15675695 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Streptococcus pyogenes M1 GAS # 3 555 4 556 560 863 74.0 0 MKVNIKNNETGVFAIGGLGEIGKNTYGVQFQDEIIIIDAGIKFPEDDLLGIDYVIPDYSY IVQNLHKVKALVITHGHEDHIGGVPYLLRQANIPIYAGPLALALITNKLDEHGLLREAEL HEINEDTVIRFRKTAISFFRTTHSIPDALGVVVKTPSGNIVATGDFKFDFTPVGEPANLH RMAKLGEEGVLCLLSDSTNAEIPTFTKSEKTIGTSILKIFEKIDGRIIFASFASNIFRLQ QAADAAVKTGRKIAVFGRSMENAIVNGERLGYIKVPKGTFVDAAELNQLPANETMILCTG SQGEPMAALSRIANGTHRQISIQPGDTVVFSSSPIPGNTTSVNRLINLLSEAGAEVIHGK INNIHTSGHGGQEEQKLMLRLMKPKYFMPVHGEFRMLKIHASLAQDTGVPEENCFIMGNG DVLALTADSARPAGHFNANDVYVDGNGVGDIGNVVLRDRRILSEEGLVLAVATVDIKNKE IMAGPDILSRGFVYMRESGDMIHEGQRLLFNALREAMKDKNCTEAKLGEAMTTALQPFLF EQTERHPMILPMIMTATVSDQ >gi|307679231|gb|GL457016.1| GENE 5 2522 - 2734 247 70 aa, chain - ## HITS:1 COG:SPy1875 KEGG:ns NR:ns ## COG: SPy1875 COG5503 # Protein_GI_number: 15675694 # Func_class: S Function unknown # Function: Uncharacterized conserved small protein # Organism: Streptococcus pyogenes M1 GAS # 1 70 1 76 76 65 53.0 2e-11 MIYKVYYQETKIRNPKREDTKSLYMEADSDVIVRQLVEENTPYNIEYVQLLDEKHLAYEQ EHADFTLTEF >gi|307679231|gb|GL457016.1| GENE 6 3012 - 3425 168 137 aa, chain - ## HITS:1 COG:SA0161 KEGG:ns NR:ns ## COG: SA0161 COG2832 # Protein_GI_number: 15925870 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 3 92 2 91 127 57 34.0 8e-09 MKKLFFIFLGSCTFALGTLGIFLPLLPTTGFYLLTAFFWMRSSDKLYNKFLASSYYQKYI QEAFFEKKITRRGKWKLFISMFLLFAIPCLIVRNTLMTTTLAIVYLAHVIGLSWYWRPKK RHSNLIKNKAKQEVCFF >gi|307679231|gb|GL457016.1| GENE 7 3654 - 5381 239 575 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 333 557 132 354 398 96 29 2e-19 MKLMWRYTMRYKKLLFADFICVFGFILIELGLPTILARMIDKGIIPKDMDYIYQQGIWMV VITIIGVAMNILLGYFGARITTNIVRDIRDDLFEKIQTFSHSEYESIGVSSLITRTTNDA YQIMLFMGNILRLGFMTPVMFIASLYMVMRTSPSLGMYVLGALPFLLLAVVGIARLSEPL SKKQQKNLDGINGILRENLSGLRVIRAFVNEKFEESRFNKVNETYTKSSKSLFRLMAAAQ PGFFFLFNIVMVLIIWSGTVQISHGDLEVGNLIAFIEYIFHALFSFMLFASVFMMYPRAA VSASRIQEALDMEPAIREEEGVTETATKGYLEFKNVTFAYPGHAESPVIRNVSFKASPGE TVAFIGSTGSGKSTLIQLIPRFYDVSEGEILIDGVNVKEYKLSALRNKIGYIPQKALLFT GTIADNLRYGKEDATLEEMERAIDIAQATEFVSQKPQGYDEPLSEGGTNFSGGQKQRLAI ARAIIRNPEIYIFDDSFSALDYQTDANLRARLKKETTESTVLIVAQRVGTIMHADRIVVL NEGDVVGIGTHRELLETCPIYYDIAASQLSEEELA >gi|307679231|gb|GL457016.1| GENE 8 5378 - 7147 186 589 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 337 569 1 233 312 76 25 2e-13 MKHAFSSMKRIGRYIKPYRVTFYLVILFTILTVAFNAALPYLTGLPTTEISRNIAAGESI NFDYVIQCLIWILVVGTGYCVAQFLSGFLMTNVVQQSMRDLRRDIEEKINRLPVSYFDKN QQGNILSRVTNDVDAVSNAMQQSFINIVSAVLGIVMAVVMMFLINPLMAIFSVIMIPLSL IISRTIVKISQKYFQGMQNSLGDLNGYVQENMTGFSVLKLYGREKETLEGFKQVNHRLNG FGFKASFISGLMLPLVQMTAYGTYIGVAVLGSYYVVAGVIVVGQLQAFIQYIWQISQPMG NITQLSAALQSASASTMRIFEILDEPEEELNEQDVPLPEPILGSVEFENVSFSYDPEKPL IRNLNFKVDAGQMVAIVGPTGAGKTTLINLLMRFYDVTEGAIKIDGIDTKKMNRSDVRSV FGMVLQDAWLYKGTIADNIRFGKLDATDYEVVDAAKTANVDHFIRTMPDGYEMEINSEGD NVSLGQKQLLTIARAVISDPKILILDEATSSVDTRLEALIQKAMDRVMEGRTSFVIAHRL STIREADLILVMKQGEIIEKGTHHELLEQGGFYEKLYNSQFAEEGDYEE >gi|307679231|gb|GL457016.1| GENE 9 7390 - 7881 462 163 aa, chain + ## HITS:1 COG:CC2643 KEGG:ns NR:ns ## COG: CC2643 COG0663 # Protein_GI_number: 16126878 # Func_class: R General function prediction only # Function: Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily # Organism: Caulobacter vibrioides # 4 154 18 168 176 161 52.0 4e-40 MKKEYFIAASADVYGNVQLAKDSNIWFQSVLRGDSNTITIGEGSNIQDGTIIHVDEDAPT IVGKYVTVGHQCMLHGCKIGDGALIGMGSTILNNAIIGENSLIGAGSLVTEGKIIPPNVL AFGRPAKVIRPLTAAEIASNHTNALHYIQRAEEFRQQKYPKLT >gi|307679231|gb|GL457016.1| GENE 10 7898 - 9046 1397 382 aa, chain + ## HITS:1 COG:BS_yvyH KEGG:ns NR:ns ## COG: BS_yvyH COG0381 # Protein_GI_number: 16080619 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine 2-epimerase # Organism: Bacillus subtilis # 1 382 1 380 380 461 63.0 1e-130 MKKIKVMTVFGTRPEAIKMAPLIKVLEEQSEGFDSVVVVTAQHRQMLDQVLEDFQITPNH DLNIMKDGQTLTDITSRVLNLLTEVLVTEQPDIVLVHGDTTTSFEAALAAFYQQIPVGHV EAELRTWQKYSPFPEEMNRQLVDVLTDIYFAPTTQSKDNLIKENHPEEHIYVTGNTAIDA MAYTVDAHYQNDLLEKIPTDQRIVLITMHRRENLGLPMANVFKAVRRLVMEHPEIEVIFP MHKNPKVREIVAEHLGELARVHLIEPLDVKDFQNFAAKSALILTDSGGVQEEAPSLGVPV LVLRDTTERPEGVAAGTLKLVGTDEQVVYQEAKTLLTDSDAYHAMAHAQNPYGDGQASRR IVEAIAYEMQQSDKKPDTFTAK >gi|307679231|gb|GL457016.1| GENE 11 9145 - 9798 720 217 aa, chain + ## HITS:1 COG:CAC0418 KEGG:ns NR:ns ## COG: CAC0418 COG0546 # Protein_GI_number: 15893709 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Clostridium acetobutylicum # 1 215 1 214 216 183 45.0 2e-46 MYQTILFDLDGTITDSGSGIMRSILYATEQLGWPAPSEETLRSFIGPPLYESFLHMAPSA EAAQQAVGHYRAYYQRKGMFENHVYPGIPEVLTRLKEAGAKLYIATSKPEEFAKKIITHF DLDRYFTGIYGASMDGHRSKKADVIQYALTEAQLDPTKEAIIMVGDRNHDILGAQQNGLD SIGVLYGFGEEIELQEAGATFLVQSPKDLGAILLQNS >gi|307679231|gb|GL457016.1| GENE 12 10006 - 11391 1417 461 aa, chain + ## HITS:1 COG:SPy0348 KEGG:ns NR:ns ## COG: SPy0348 COG1559 # Protein_GI_number: 15674503 # Func_class: R General function prediction only # Function: Predicted periplasmic solute-binding protein # Organism: Streptococcus pyogenes M1 GAS # 48 457 102 521 524 317 43.0 4e-86 MANDNQNNQDPKSSLRDQVTGSLKGRNDGDQPDSSEKNDRSPQPSSDESQETASRTTQTR AGSRAARRRGKDKTTQTVEEPTPIETDEKPTNTKKQTRKKEDRLVGRIVLIVVSVLVLMM AIFGFTFYKYVDAGLQPLDKNNKKLVQVHIPEGSSNKQIAAVLEESNVIKSGMVFNYYVK FKNLTDFQAGYYQMSPSMTLDEIGEMLKEGGTPEPTKIADGKVTIPEGYDIDKIGEAIEK NTDFKKADFIALMKNEDFFNQMKAKYPDLLESAATAEGVRYRLEGYLFPATYDYYKKATL PEFVEQMIAKMNTVMEQYTPTIHAKNLTNQQVLTLASLVEKEGVKEADRKQIAQVFFNRL AADMPIQSDISILYALGEHKETVTYADLEVDSSYNLYKNTGYGPGPLDSPSEESIKAVLN PTPSDYLYFVADISTGKVYFSKTYEEHQVLVDQYVNNSSSE >gi|307679231|gb|GL457016.1| GENE 13 11652 - 12131 746 159 aa, chain + ## HITS:1 COG:lin1531 KEGG:ns NR:ns ## COG: lin1531 COG0782 # Protein_GI_number: 16800599 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Listeria innocua # 3 159 4 160 160 196 73.0 1e-50 MVEKVYPMTLEGKEKLEQELEELKTIKRKEIVERIKIARSFGDLSENSEYESAKDEQAFV EGRITTLENMIRFAEIIDNDGVDQDEVSIGKTVTFQELPDGEEEEYTIVGSAEADPFSGK ISNDSPIAQALIGKQLGDQVIIATPGGDMTVKITKVEAN >gi|307679231|gb|GL457016.1| GENE 14 12282 - 13013 730 243 aa, chain + ## HITS:1 COG:lin1019 KEGG:ns NR:ns ## COG: lin1019 COG4758 # Protein_GI_number: 16800088 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 29 243 30 237 237 145 38.0 5e-35 MNNPWRFFIVAEALLFILALWQIVHNPGLAVLLTIGVLLVAYVSRKASKTHFNNFQFVLG VVFIVIGAMNSTAVWFMLIFGVLFIGLKGFEISGVDIAERAPWRKKQMIMVETAAKEPKN GKRFKRRWFANERIGNNIYEWDDINIDLISGDTIIDLGNTLLPKEDNIIIIRKGFGRTRI LVPLGVAILLEHSTFYGTVRFEEEKYQLKNESLKIYSNDYDTNLRRLKIMTNTLVGDVEV IRV >gi|307679231|gb|GL457016.1| GENE 15 13010 - 14113 870 367 aa, chain + ## HITS:1 COG:lin1020 KEGG:ns NR:ns ## COG: lin1020 COG4585 # Protein_GI_number: 16800089 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 6 362 4 352 352 291 50.0 2e-78 MTDRISRRMISLYASLSTFIVILITLFSYFHSIKQNRWLLELLQRKVFYLPLIVHIVLIS LLIGLLTFLLISLVQKGQYGRIEEKLRLLANGNYESPVLNKPTTSENQDHYLTEVEQDIW SIKNKLLEMSKELQLLNSRPQLMDGQTKEEILENERHRLARELHDSVSQQLFAAMMMLSA LNEQAQRTETPEPYRKQLAMVAEIINASQSEMRALLLHLRPISLEGKSLRKGIEQLLKEL QTKIKIELIWDVEDVHLNSSIEDHLFRIVQELLSNTLRHAKAKELEVYLHQVDKNVLLRI VDDGVGFDMKEQSNKAGSYGLNNIRERVVGMGGTVKIISFKGQGTSVEIKVPVIKEETAS DQSNVSG >gi|307679231|gb|GL457016.1| GENE 16 14088 - 14720 820 210 aa, chain + ## HITS:1 COG:lin1021 KEGG:ns NR:ns ## COG: lin1021 COG2197 # Protein_GI_number: 16800090 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Listeria innocua # 1 210 1 210 212 299 79.0 3e-81 MIKVMLVDDHEMVRLGVSSYLSIQEDIEVVGEAENGKIGYEKALELRPDVILMDLVMEEM DGIDSTKAILKDWPEAKIIIVTSFIDDEKVYPAIEAGAAGYLLKTSTAHEIADAIRATYR GERVLEPEVTHKMMERLTKKQEPVLHEDLTNREHEILMLIAQGKSNQEIADELFITLKTV KTHVSNILAKLDVDDRTQAAIYAFQHGLAK >gi|307679231|gb|GL457016.1| GENE 17 14824 - 15489 860 221 aa, chain + ## HITS:1 COG:lin1022 KEGG:ns NR:ns ## COG: lin1022 COG0569 # Protein_GI_number: 16800091 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transport systems, NAD-binding component # Organism: Listeria innocua # 1 219 1 218 219 269 62.0 3e-72 MKQNFAIIGLGRFGGSICQTLVEAGQEVLAIDSSEDRVNEYMNIATHAVVANAQDEMTLR SLGIRNFDHVVVAIGEDIQASILVTLMVKEMGVPNVLAKAVNEYHARVLDKIGADMVVHP ERDMGIRIAHKLVSRNILDYIELSSEFSLAEVRVTNPKFYNKTLAELNFRQRFGLTVVAI RRSKTEVIASPDASEIVRENDNLLVIGDTADVDLLDEKMNG >gi|307679231|gb|GL457016.1| GENE 18 15562 - 15873 574 103 aa, chain + ## HITS:1 COG:BS_yneR KEGG:ns NR:ns ## COG: BS_yneR COG4841 # Protein_GI_number: 16078867 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 95 1 95 95 76 37.0 1e-14 MKLEVTPKAQQWFKEETGVQPETGIRFFGKIYGKTPVHDGFSIAMSVEAPDEPMIKENLD GITYFIEETDDWFFKGYDLIVDYDEKNDEPRYQFEANQEDLTK >gi|307679231|gb|GL457016.1| GENE 19 16077 - 17015 1080 312 aa, chain + ## HITS:1 COG:SPy0510 KEGG:ns NR:ns ## COG: SPy0510 COG0463 # Protein_GI_number: 15674614 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Streptococcus pyogenes M1 GAS # 1 305 3 306 308 379 59.0 1e-105 MLSIVVPCYNEEAAIPLFFEEVEKISQQLSHSVEYIFVNDGSKDKTLAVLRQLYREHPEK VRYLSFSRNFGKEAGLYAGLKEATGDLVTVMDVDLQDPPELLPQMIEMIETSADLDCVGT RRITRDGEPPIRSFFARMFYKLINRIAETEMVDGARDFRVMTRQMVDAILELSEYNRFSK GIFSWVGFKTEYIEFKNRERIAGETSWSFWSLLSYSIDGIVNFSETPLNIASYVGAFSCI GSALAMLVIIFRTLVNGDPTSGWPSMVCIVLFVGGLQLLCLGIIGKYIGKIFLETKKRPI YIVKESEKDSKK >gi|307679231|gb|GL457016.1| GENE 20 17225 - 18295 1039 356 aa, chain + ## HITS:1 COG:PH0022 KEGG:ns NR:ns ## COG: PH0022 COG3839 # Protein_GI_number: 14589983 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Pyrococcus horikoshii # 1 354 10 370 373 261 41.0 1e-69 MIEVIDLKKVFDNGFEALKSVNFTIEQGDLVCLLGPSGCGKSTILNLIAGLLHPSDGDIQ FRQQSVVKTAPKDRNIGFVFQNYALYPHMTVLENVMFPLTVGSKKVPKAEAQAIAEEYMK LTNIEELSHKKPGTLSGGQQQRVAITRALVQKPDVLLLDEPLSNLDARLRLKIREEIRRL VKEVGITTIFVTHDQEEALSISDKIILLNEGVIQQNDEPQNLYLEPNNLFVAQFIGNPII NLLSVEVKDGKMYHESFEIPLERFEQARFKMPMTDGKYTFASRPEDVVPTETGLFTTTTD LVELIGRERILRFTLGNEQVKSIVSVEEAIEEGDTLSFDFSYKKVFIFNEAGDRVY >gi|307679231|gb|GL457016.1| GENE 21 18295 - 19170 803 291 aa, chain + ## HITS:1 COG:TM0596 KEGG:ns NR:ns ## COG: TM0596 COG1175 # Protein_GI_number: 15643362 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Thermotoga maritima # 45 288 169 414 420 173 42.0 3e-43 MKKYNPENQPKAWLFLLPSLGIILLFSVYPLFRSLWMSFQKGSLINQRYAGLENYQRVLN DPIFYKALKNTALYAFAVVPIALIISLAIAWIIFEKVKHKSFFETIFFMPYVTSTIAIGI VFRYFFNGDYGIVNYVLGFFGIPSVNWLDNVQMSMPTLIIFGVWTSLAFNIIILLAGLRN IDEEHFKIAKMFGASDGEIFRRITFPQLVPTIAFLLTVNLIGAFKVYTQVYALFGGRAGI ANSATTAVYYIYDKFHIAGRPGIAMAATVILFVIILVVTFLQNKLLKKVGQ >gi|307679231|gb|GL457016.1| GENE 22 19175 - 19993 794 272 aa, chain + ## HITS:1 COG:TM0598 KEGG:ns NR:ns ## COG: TM0598 COG0395 # Protein_GI_number: 15643364 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Thermotoga maritima # 52 271 58 277 277 178 42.0 1e-44 MKKVLTIIAFVFLGILAVITLFPFVYMILAGLMSYSEATSMPPTMFPKQPQWQNYTEVFQ KAPFLRYFLNTVFVSGVTTIATVVTAVLASFALTSLKFRFKNVVIALMISLLMVPYESII FTNYQTIAQLGLLNTYSALIIPFLTSIFYIYYLNGYLKGIPDTFYKAAKIDGASDLEYIW RILVPMSKPALVTVGILTFISSWNSFLWPLLVTNEKKYRLLNNGLSAFATESGSDVHLQM AAATLTVIPILIIYLIFRKEIIRGVAKNGIKG >gi|307679231|gb|GL457016.1| GENE 23 19977 - 21266 1339 429 aa, chain + ## HITS:1 COG:PH0466 KEGG:ns NR:ns ## COG: PH0466 COG0595 # Protein_GI_number: 14590378 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Pyrococcus horikoshii # 9 425 4 510 514 100 26.0 8e-21 MESKAKTTVTFHSGILTIGGTVIEVAYKDAHIFFDFGTEFRPELDLPDDHIETLINNRLV PELKDLYDPRLGYEYHGTEDKEYQHTAVFLSHAHLDHSRMINYLDPAVPLYTLKETKMIL NSLNRKGDFLIPSPFEEKNFTREMIGLNKNDVIKVGEISVEIVPVDHDAYGASALLIRTP DHFITYTGDLRLHGHNREETLAFCEKAKHTELLMMEGVSISFPEREPDPAQIAVVSEEDL VQHLVRLELENPNRQITFNGYPANVERFAKIIEKSPRTVVLEANMAALLLEVFGIEVRYY YAESGKIPELNPALEIPYDTLLKDKTDYLWQVVNQFDNLQEGSLYIHSDAQPLGDFDPQY RVFLALLAKKDITFVRLACSGHAMPEDLDKIIALIEPQVLVPIHTLKPEKLENPYGERIL PERGEQIVL >gi|307679231|gb|GL457016.1| GENE 24 21290 - 22570 1692 426 aa, chain + ## HITS:1 COG:TM0595 KEGG:ns NR:ns ## COG: TM0595 COG1653 # Protein_GI_number: 15643361 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Thermotoga maritima # 44 403 22 389 419 177 31.0 4e-44 MKFKTLATTVLATAAIFALGACGNGNGAKESNDIVKEVKEDTTITFWHAMNGVQEEALTK LTKDFMKENPKIKVELQNQSAYPDLQAKINSTLTSPKDLPTITQAYPGWLWNAAQDEMLV DLKPYMDDDTIGWKDAEPIREVLLDGAKIDGKQYGIPFNKSTEMLFYNADLLKEYGVEVP KTLEELKEASKTIYEKSNKEVVGAGFDSLNNYYAIGMKNKGVDFNKDLDLTSKDSQEVVD YYRDGIEAGYFRTAGSDKYLSGPFANKKVAMFVGSIAGAGFVQKDAEAGGYEYGVAPRPE KINLQQGTDIYMFDSATPEQRTAAFEFMKFLATPDSQLYWAQQTGYMPILESVLHSDEYK NSKTTKVPAQLENAVKDLFAIPVEENADSAYNEMRTIMESIFASSNKDTKKLLKDATSQF EQAWNQ >gi|307679231|gb|GL457016.1| GENE 25 22668 - 24221 1796 517 aa, chain + ## HITS:1 COG:L99798 KEGG:ns NR:ns ## COG: L99798 COG0737 # Protein_GI_number: 15672285 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Lactococcus lactis # 1 516 1 518 519 618 56.0 1e-176 MQIKILATSDMHGYIMPTSYSEKKMDLPFGTAKAATMLKKLRASAKGPVFQIENGDFIQG SPLSYYVRKAETHSVEAITKIINQMNYDVSILGNHEFNYGLDYLKETIASYQQPVLAANI LGKDGQPYFGQPYVIIEKQGVKVAILGVTTQYIPHWEQPATVKDLTFKSVVETAAEYVPK LREEADLVVVAYHGGFEKDLETGEPTELLTGENEGYDLLEKVPGIDALVTGHQHREIATK LNGIPVIQPGFRGAFVGEITLEIEPMAKGYRVIGSDAAIHPVGNEQPDAEILALTTALHD EVEEWLDQPVGNVEGDMTIQNPNAVRLKEHPYIEFINNVQMASSGTDISGTALFNNEGKG FNNQITMRDIITNYIYPNTLAVLRVTGQDLREALEQSATYFVLEKGQPIFNPKYVDPKPQ YYNYDMYEGIEYTLDLRQPFGERVTKLNYHGKAVQAEDVLEIVTNQYRAVGGGNYQMFQP EKIIREIQIDMTELIAEYLKKHPIIQASTNDNFKVIW >gi|307679231|gb|GL457016.1| GENE 26 24348 - 25247 797 299 aa, chain - ## HITS:1 COG:BH0949 KEGG:ns NR:ns ## COG: BH0949 COG0111 # Protein_GI_number: 15613512 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Bacillus halodurans # 36 288 35 284 316 179 33.0 8e-45 MNQPIIYLNEVFNEEQLEQVKAVAPNYLVKTSTDHLSSAEEEAIEIMLGWHKEIGPRLLA SDTSHLKWIQLISAGADYMDFDKLREKGILLSNGSGIHSVSISEHVLGVLLAHTRGLQES IQQQMQHTWNQTAPSYQQLSGQKMLIVGTGQIGQQLAKFAKGLNLQVYGVNTSGHVTEGF IECYSQKNMSKIIHEMSIVVNILPLTETTKHLYNQALFEKMAPETIFVNVGRGTSVATND LITALNNKTIAFAALDVFEEEPLPEDSPLWEMQNVLLTPHISGMTPKFNQNYWRFLFQT >gi|307679231|gb|GL457016.1| GENE 27 25396 - 26406 1008 336 aa, chain - ## HITS:1 COG:lin2489 KEGG:ns NR:ns ## COG: lin2489 COG0492 # Protein_GI_number: 16801551 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Listeria innocua # 1 331 1 331 331 440 61.0 1e-123 MSDEKDIYDLTIIGGGPVGLFAAFYAGIRKAKTKIIDSLPQLGGQLTMLYPEKYIYDIPG FPAIKAGELIANLEKQMQPFQHDVCLEEEVTHLAQEADGLLRLDTTKGTHYSKTVIFAIG NGAFQPRRLAIENVEAFEGESIHYYVTDMKKFAGKKVAIAGGGDSAIDWALMLENVAEEV SIIHRRPQFRGHEHSVEQLEKSSVSIRTPYIISDILKENETFTGIQLTETKGDQTLDLPL DDLIINYGFTSSLTHLKEWGLDVSRNAINVHSDMSTNIPGVYAVGDICSYEGKVKLIATG FGEAPTAVNNALHYLRPDARRQPVHSTSLFENGVPK >gi|307679231|gb|GL457016.1| GENE 28 26611 - 27201 896 196 aa, chain + ## HITS:1 COG:lin2475 KEGG:ns NR:ns ## COG: lin2475 COG0652 # Protein_GI_number: 16801537 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Listeria innocua # 4 193 3 193 194 256 68.0 1e-68 MSQFPQLDLENAKGPKAVIKTNRGDITVQLFPEQAPKTVENFVELAKKGYYDGVIFHRVI PDFMIQGGDPTGTGMGGESIYGEAFEDEFSRDVFNLRGALSMANAGPNTNGSQFFVVTNQ NVPAQMMSQLEDAGFPEEIIEAYKQGGTPWLDFRHTVFGHVVDGMDVVDEIGGVQRDAQD RPTFDVVMDTVEIIGE >gi|307679231|gb|GL457016.1| GENE 29 27366 - 27572 259 68 aa, chain + ## HITS:1 COG:no KEGG:EF2896 NR:ns ## KEGG: EF2896 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 68 1 68 68 118 100.0 9e-26 MLEKYRYPMALALFAVILPFIGTFFTYVDQQGIVHEPGFYTIIIGEILLLFSGIWFVRVY LAKRKRKN >gi|307679231|gb|GL457016.1| GENE 30 27606 - 28772 1197 388 aa, chain - ## HITS:1 COG:BS_patB KEGG:ns NR:ns ## COG: BS_patB COG1168 # Protein_GI_number: 16080196 # Func_class: E Amino acid transport and metabolism # Function: Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities # Organism: Bacillus subtilis # 3 388 2 387 387 352 42.0 7e-97 MFNFNETIERRHTNCVKWDTVEASYHEKDLLPLWVADMDFKVHQPILDALSQVIEQGILG YAVAPNELYQAIQDWQRQHHQLIVEKEEILFNSGVVPSLATTVQAYTAPADSVMICDPVY PPFADVVKQNERRLVRHSLLEVNGHYEVDLVKMEQQIIEEKVKLLLFCNPHNPGGRVWTK EELLAIGRLCQKHQVTVVSDEIHQDLIFKPHTFTSFTVADEAFKEFTVTLTAATKTFNLA GIKNSMLFIPNEKLRQSFVSLQDKNHQGGINTFGYVGTAAAYQTGEEWLTALLDYLKENI DFALSFFREEMPSVRVMEPEGTYLLWLDFSSYSLTDRELRDTLIHKGKVVLNPGISFGPQ GSQHMRLNLACSKETLEEGLLRIKKAFN >gi|307679231|gb|GL457016.1| GENE 31 28938 - 29324 187 128 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|86608329|ref|YP_477091.1| putative ribosomal protein S1 [Synechococcus sp. JA-2-3B'a(2-13)] # 1 106 186 291 304 76 34 2e-13 MKRGNLMKYKIGMVLSGTITGLQPYGAFVSLDEETQGLIHVSEVQAGFTKNIHGLLTVGQ KVTVQVIDVDEYSQKISLSLRTLEDKVHSVNHRRKKYFTDKNKKIGFATLDKELPEWIDE AMDKLLEK >gi|307679231|gb|GL457016.1| GENE 32 29398 - 29760 357 120 aa, chain + ## HITS:1 COG:no KEGG:EF2893 NR:ns ## KEGG: EF2893 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 120 1 120 120 224 100.0 7e-58 MSNKKVAGTIILNLNDGSKKFLMHPIGEAIEFAMAKVSDEMTGLASMLQWFKEEVQLDVT SISLVELTNAHINKENVPLFVFEMDEQALKNEMDKDYTWVAPAELKTIWSKYHIEGVPMF >gi|307679231|gb|GL457016.1| GENE 33 29842 - 30000 97 52 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256618321|ref|ZP_05475167.1| ## NR: gi|256618321|ref|ZP_05475167.1| predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis ATCC 4200] # 1 52 2 53 53 62 100.0 8e-09 MFGQHFFSKKLKEVFNLFSFFSIISFLNFLNPNCLSKQFNSLLKIEQFESYI Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:32:29 2011 Seq name: gi|307679230|gb|GL457017.1| Enterococcus faecalis TX2141 genomic scaffold Scfld71, whole genome shotgun sequence Length of sequence - 1514 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 23/0.000 + CDS 56 - 613 487 ## COG2963 Transposase and inactivated derivatives + Prom 679 - 738 1.9 2 1 Op 2 . + CDS 769 - 1458 400 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|307679230|gb|GL457017.1| GENE 1 56 - 613 487 185 aa, chain + ## HITS:1 COG:L138554 KEGG:ns NR:ns ## COG: L138554 COG2963 # Protein_GI_number: 15674130 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 180 1 176 185 111 40.0 9e-25 MAKYSFEFKLKLVHDYLSGQGGLRFLAKKYGFKDSSQISKWINAYKELGEEGLLRSRKNK NYSVQFKLDAIELYLTTELSYQEVANLLKMNNPSLIANWLRTYQKFGIEGLSKQKGRPPT MSKKKRNEPQPLPSERSQVEKLEKENRMLKIENAYLKELRRLRLEDEQKMNESHESFTVS EDAFD >gi|307679230|gb|GL457017.1| GENE 2 769 - 1458 400 229 aa, chain + ## HITS:1 COG:L0470 KEGG:ns NR:ns ## COG: L0470 COG2801 # Protein_GI_number: 15672806 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 222 50 266 272 251 60.0 5e-67 MKRRGFQVNKKKVQRLIQKLKLQVKAFTKKSRKYNSYKGIVGKIAKNLIRRRFKTSVPHQ KITTDTTEFKYFEADNAGIFRQKKLYLDPFMDMYNSEILSYSLSTQPNGKTVMKGLKEAI SQTNDCPYRRTFHSDQGWAYQMNVYIQTLKDNNIFQSMSRKGTCLDNSPMENFFSILKQE VYYGKIYQSQNELIEAIENYIYYYNHHRIKEKLNWKSPVEFRQFNQKTA Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:32:31 2011 Seq name: gi|307679229|gb|GL457018.1| Enterococcus faecalis TX2141 genomic scaffold Scfld72, whole genome shotgun sequence Length of sequence - 2419 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 1, operones - 1 average op.length - 8.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 1 - 441 458 ## EF2810 hypothetical protein 2 1 Op 2 . + CDS 438 - 755 346 ## MPTP_1474 hypothetical protein 3 1 Op 3 . + CDS 748 - 1065 488 ## gi|257081637|ref|ZP_05575998.1| predicted protein 4 1 Op 4 . + CDS 1065 - 1553 450 ## gi|315145402|gb|EFT89418.1| conserved domain protein 5 1 Op 5 . + CDS 1564 - 1884 261 ## EF1995 hypothetical protein 6 1 Op 6 . + CDS 1886 - 2041 148 ## EF1994 hypothetical protein 7 1 Op 7 . + CDS 2075 - 2296 242 ## gi|257081641|ref|ZP_05576002.1| predicted protein 8 1 Op 8 . + CDS 2289 - 2418 154 ## EF1993 holin Predicted protein(s) >gi|307679229|gb|GL457018.1| GENE 1 1 - 441 458 146 aa, chain + ## HITS:1 COG:no KEGG:EF2810 NR:ns ## KEGG: EF2810 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 144 156 299 302 246 82.0 2e-64 ARKEEFEKWRKNQQDTFEAWRNGQESDYLMWFESIKDILKSVDPGGTMLAELMDARVDIQ GVRHNSLSERLLADMDYLYQRLEERLFTLKHGNVSTLEILQDDSFSTNHQVKVIGSVNRP MKDGALIIAKIDDEKQNTFRIEGVSK >gi|307679229|gb|GL457018.1| GENE 2 438 - 755 346 105 aa, chain + ## HITS:1 COG:no KEGG:MPTP_1474 NR:ns ## KEGG: MPTP_1474 # Name: not_defined # Def: hypothetical protein # Organism: M.plutonius # Pathway: not_defined # 1 60 1 60 205 72 58.0 8e-12 MIESKRMMETDEKGVKRQFFPMTHVSAIIGLSEIMGGQSMVSSVNGRSGPVIITRADLDL PKDGVMISQEEYSKITQIIADYEAGKLGGSSVEFEKVKGDEESNA >gi|307679229|gb|GL457018.1| GENE 3 748 - 1065 488 105 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|257081637|ref|ZP_05575998.1| ## NR: gi|257081637|ref|ZP_05575998.1| predicted protein [Enterococcus faecalis E1Sol] predicted protein [Enterococcus faecalis E1Sol] conserved domain protein [Enterococcus faecalis TX2141] # 1 105 5 109 109 171 100.0 2e-41 MPDLYVVKKDGVAIDVQTSTTGVVGLNEFVDAKLGDAGAGTVSSVNGHTGEVILNAADVK ALPDTTVIPTIPSNATAEKDGLMSKTDKAKLDALPVFTFEKVGEV >gi|307679229|gb|GL457018.1| GENE 4 1065 - 1553 450 162 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315145402|gb|EFT89418.1| ## NR: gi|315145402|gb|EFT89418.1| conserved domain protein [Enterococcus faecalis TX2141] # 1 162 1 162 162 307 100.0 2e-82 MDIVQLMENNEPKAMATVVEAVDGLENYPTKADADKSYQKIIQGSPLWTGVWYGGASGSG TTPSKPLSQCQNGWILQWQEMSSTGQANDAVFQFQYVPKNHISNSGSGGTVFNLNAYNGK NPQTKYLYIKDAKITGHDLNAPDGTAAGSGNKMYILTKIFEY >gi|307679229|gb|GL457018.1| GENE 5 1564 - 1884 261 106 aa, chain + ## HITS:1 COG:no KEGG:EF1995 NR:ns ## KEGG: EF1995 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 106 1 106 106 121 83.0 1e-26 MKIWIDNVKGFLQGYSLVEQPKTIEVEVNEDFSDFFNYRWDGTSLIYDPDNVPKPAPTPP TELELLQKQNAELMKQVSQQNQVIQQTQRMTGELMKQVAELTKGAE >gi|307679229|gb|GL457018.1| GENE 6 1886 - 2041 148 51 aa, chain + ## HITS:1 COG:no KEGG:EF1994 NR:ns ## KEGG: EF1994 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 51 1 51 51 94 96.0 1e-18 MKTNVFPGFDNIKQLYDWNCYTKQDLVDYVNMNCLTEEEYTKICGEPFSES >gi|307679229|gb|GL457018.1| GENE 7 2075 - 2296 242 73 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|257081641|ref|ZP_05576002.1| ## NR: gi|257081641|ref|ZP_05576002.1| predicted protein [Enterococcus faecalis E1Sol] hypothetical protein HMPREF9515_01694 [Enterococcus faecalis TX0860] predicted protein [Enterococcus faecalis E1Sol] hypothetical protein HMPREF9515_01694 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9495_00781 [Enterococcus faecalis TX2141] # 1 73 1 73 73 134 100.0 3e-30 MNLTLEQWLALITFLGGIIFALMKFYHVFSQLEDSMKELKQAVDRLNNHEVRISRLEEQN KTLFRGIGGNKND >gi|307679229|gb|GL457018.1| GENE 8 2289 - 2418 154 43 aa, chain + ## HITS:1 COG:no KEGG:EF1993 NR:ns ## KEGG: EF1993 # Name: not_defined # Def: holin # Organism: E.faecalis # Pathway: not_defined # 1 43 1 43 77 71 88.0 1e-11 MIDWKSRIKNKQFWLSLIPAVLLLIQVVAVPFGYKFQIDVINQ Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:35:17 2011 Seq name: gi|307679228|gb|GL457019.1| Enterococcus faecalis TX2141 genomic scaffold Scfld76, whole genome shotgun sequence Length of sequence - 58732 bp Number of predicted genes - 73, with homology - 70 Number of transcription units - 19, operones - 14 average op.length - 4.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 54 - 629 647 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs 2 1 Op 2 . - CDS 671 - 1351 903 ## COG0120 Ribose 5-phosphate isomerase - Prom 1378 - 1437 3.9 + Prom 1481 - 1540 5.1 3 2 Op 1 56/0.000 + CDS 1696 - 2109 706 ## PROTEIN SUPPORTED gi|29374844|ref|NP_813997.1| 30S ribosomal protein S12 4 2 Op 2 51/0.000 + CDS 2165 - 2635 806 ## PROTEIN SUPPORTED gi|29374845|ref|NP_813998.1| 30S ribosomal protein S7 + Prom 2637 - 2696 1.9 5 2 Op 3 30/0.000 + CDS 2719 - 4800 2495 ## COG0480 Translation elongation factors (GTPases) + Prom 4811 - 4870 7.2 6 2 Op 4 . + CDS 4951 - 6138 1486 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 + Term 6191 - 6233 7.7 + Prom 6198 - 6257 4.2 7 3 Op 1 . + CDS 6320 - 6715 536 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 8 3 Op 2 . + CDS 6781 - 7143 424 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase + Term 7158 - 7192 -0.3 + Prom 7206 - 7265 6.3 9 4 Op 1 . + CDS 7414 - 8580 1229 ## COG2230 Cyclopropane fatty acid synthase and related methyltransferases + Term 8597 - 8645 9.5 10 4 Op 2 . + CDS 8649 - 8783 49 ## PROTEIN SUPPORTED gi|227515486|ref|ZP_03945535.1| ribosomal protein S10 11 4 Op 3 . + CDS 8790 - 8861 67 ## 12 4 Op 4 40/0.000 + CDS 8893 - 9237 576 ## PROTEIN SUPPORTED gi|227519991|ref|ZP_03950040.1| 30S ribosomal protein S10 13 4 Op 5 58/0.000 + CDS 9259 - 9888 1059 ## PROTEIN SUPPORTED gi|29374851|ref|NP_814004.1| 50S ribosomal protein L3 14 4 Op 6 61/0.000 + CDS 9914 - 10537 1033 ## PROTEIN SUPPORTED gi|227519993|ref|ZP_03950042.1| 50S ribosomal protein L4 15 4 Op 7 61/0.000 + CDS 10537 - 10827 471 ## PROTEIN SUPPORTED gi|238857874|ref|ZP_04648103.1| ribosomal protein L23 16 4 Op 8 60/0.000 + CDS 10867 - 11697 1431 ## PROTEIN SUPPORTED gi|29374854|ref|NP_814007.1| 50S ribosomal protein L2 17 4 Op 9 59/0.000 + CDS 11740 - 12018 486 ## PROTEIN SUPPORTED gi|29374855|ref|NP_814008.1| 30S ribosomal protein S19 18 4 Op 10 61/0.000 + CDS 12034 - 12387 564 ## PROTEIN SUPPORTED gi|227519997|ref|ZP_03950046.1| 50S ribosomal protein L22 19 4 Op 11 50/0.000 + CDS 12454 - 13110 1112 ## PROTEIN SUPPORTED gi|29374857|ref|NP_814010.1| 30S ribosomal protein S3 20 4 Op 12 50/0.000 + CDS 13113 - 13547 753 ## PROTEIN SUPPORTED gi|29374858|ref|NP_814011.1| 50S ribosomal protein L16 21 4 Op 13 50/0.000 + CDS 13537 - 13725 296 ## PROTEIN SUPPORTED gi|29374859|ref|NP_814012.1| ribosomal protein L29 22 4 Op 14 50/0.000 + CDS 13728 - 14015 476 ## PROTEIN SUPPORTED gi|227520001|ref|ZP_03950050.1| 30S ribosomal protein S17 23 4 Op 15 57/0.000 + CDS 14073 - 14441 591 ## PROTEIN SUPPORTED gi|29374861|ref|NP_814014.1| ribosomal protein L14 24 4 Op 16 48/0.000 + CDS 14477 - 14788 517 ## PROTEIN SUPPORTED gi|29374862|ref|NP_814015.1| 50S ribosomal protein L24 25 4 Op 17 50/0.000 + CDS 14814 - 15353 896 ## PROTEIN SUPPORTED gi|29374863|ref|NP_814016.1| 50S ribosomal protein L5 26 4 Op 18 50/0.000 + CDS 15372 - 15557 333 ## PROTEIN SUPPORTED gi|29374864|ref|NP_814017.1| 30S ribosomal protein S14 27 4 Op 19 55/0.000 + CDS 15593 - 15991 660 ## PROTEIN SUPPORTED gi|29374865|ref|NP_814018.1| 30S ribosomal protein S8 28 4 Op 20 46/0.000 + CDS 16023 - 16559 909 ## PROTEIN SUPPORTED gi|227520007|ref|ZP_03950056.1| 50S ribosomal protein L6 + Term 16602 - 16643 4.1 + Prom 16615 - 16674 3.5 29 4 Op 21 56/0.000 + CDS 16711 - 17076 599 ## PROTEIN SUPPORTED gi|227520008|ref|ZP_03950057.1| 50S ribosomal protein L18 30 4 Op 22 50/0.000 + CDS 17097 - 17597 817 ## PROTEIN SUPPORTED gi|29374868|ref|NP_814021.1| ribosomal protein S5 31 4 Op 23 48/0.000 + CDS 17612 - 17791 286 ## PROTEIN SUPPORTED gi|29374869|ref|NP_814022.1| ribosomal protein L30 32 4 Op 24 53/0.000 + CDS 17839 - 18279 731 ## PROTEIN SUPPORTED gi|29374870|ref|NP_814023.1| 50S ribosomal protein L15 33 4 Op 25 28/0.000 + CDS 18280 - 19578 762 ## PROTEIN SUPPORTED gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 + Term 19586 - 19622 5.7 34 4 Op 26 . + CDS 19665 - 20315 929 ## COG0563 Adenylate kinase and related kinases + Prom 20339 - 20398 7.0 35 5 Op 1 . + CDS 20459 - 20548 66 ## 36 5 Op 2 . + CDS 20526 - 20744 311 ## PROTEIN SUPPORTED gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 37 5 Op 3 . + CDS 20777 - 20893 210 ## PROTEIN SUPPORTED gi|29374874|ref|NP_814027.1| 50S ribosomal protein L36 38 5 Op 4 48/0.000 + CDS 20913 - 21278 599 ## PROTEIN SUPPORTED gi|29374875|ref|NP_814028.1| 30S ribosomal protein S13 39 5 Op 5 32/0.000 + CDS 21306 - 21695 654 ## PROTEIN SUPPORTED gi|29374876|ref|NP_814029.1| 30S ribosomal protein S11 40 5 Op 6 50/0.000 + CDS 21776 - 22714 1238 ## COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit 41 5 Op 7 . + CDS 22788 - 23171 618 ## PROTEIN SUPPORTED gi|29374878|ref|NP_814031.1| 50S ribosomal protein L17 + Term 23205 - 23258 1.0 + Prom 23334 - 23393 7.5 42 6 Op 1 . + CDS 23446 - 24645 1350 ## EF0235 hypothetical protein 43 6 Op 2 . + CDS 24661 - 25836 1313 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase + Term 25848 - 25890 9.1 + Prom 25893 - 25952 7.4 44 7 Op 1 15/0.000 + CDS 26038 - 26877 1100 ## COG1122 ABC-type cobalt transport system, ATPase component 45 7 Op 2 34/0.000 + CDS 26853 - 27722 440 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 46 7 Op 3 8/0.000 + CDS 27722 - 28516 782 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 47 7 Op 4 . + CDS 28535 - 29284 819 ## COG0101 Pseudouridylate synthase + Term 29288 - 29332 8.2 - Term 29267 - 29325 14.2 48 8 Tu 1 . - CDS 29335 - 29646 585 ## COG0393 Uncharacterized conserved protein - Prom 29673 - 29732 3.4 - Term 29713 - 29766 15.1 49 9 Op 1 . - CDS 29779 - 31134 1730 ## COG1114 Branched-chain amino acid permeases - Prom 31161 - 31220 3.7 50 9 Op 2 . - CDS 31225 - 31716 470 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 31752 - 31811 9.7 + Prom 31698 - 31757 6.7 51 10 Tu 1 . + CDS 31905 - 32474 664 ## COG1611 Predicted Rossmann fold nucleotide-binding protein + Term 32475 - 32534 17.4 - Term 32461 - 32520 15.4 52 11 Op 1 34/0.000 - CDS 32521 - 33261 279 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 53 11 Op 2 . - CDS 33273 - 34856 2030 ## COG0765 ABC-type amino acid transport system, permease component - Prom 34954 - 35013 3.5 - Term 35362 - 35414 9.2 54 12 Tu 1 . - CDS 35415 - 35711 428 ## EF0248 hypothetical protein - Prom 35735 - 35794 5.6 + Prom 35805 - 35864 6.1 55 13 Op 1 . + CDS 35884 - 36597 804 ## COG0846 NAD-dependent protein deacetylases, SIR2 family 56 13 Op 2 . + CDS 36602 - 37447 1015 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 57 13 Op 3 . + CDS 37458 - 37970 566 ## COG1827 Predicted small molecule binding protein (contains 3H domain) + Term 38043 - 38080 -0.7 + Prom 38028 - 38087 8.3 58 14 Tu 1 . + CDS 38204 - 39709 1588 ## COG1705 Muramidase (flagellum-specific) + Term 39758 - 39811 13.1 + Prom 39896 - 39955 14.3 59 15 Tu 1 . + CDS 39986 - 41476 1816 ## COG1012 NAD-dependent aldehyde dehydrogenases - Term 41582 - 41640 20.0 60 16 Op 1 . - CDS 41703 - 42686 1229 ## COG0039 Malate/lactate dehydrogenases - Prom 42747 - 42806 7.5 61 16 Op 2 . - CDS 42904 - 43083 84 ## - Prom 43283 - 43342 4.0 + Prom 42895 - 42954 8.3 62 17 Op 1 7/0.000 + CDS 43022 - 43588 618 ## COG0193 Peptidyl-tRNA hydrolase 63 17 Op 2 2/0.000 + CDS 43608 - 47147 3778 ## COG1197 Transcription-repair coupling factor (superfamily II helicase) 64 17 Op 3 1/0.200 + CDS 47163 - 48752 1692 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 65 17 Op 4 . + CDS 48767 - 49030 419 ## COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) + Term 49039 - 49105 10.0 + Prom 49198 - 49257 5.5 66 18 Op 1 . + CDS 49285 - 49764 429 ## EF0261 hypothetical protein 67 18 Op 2 2/0.000 + CDS 49809 - 50288 361 ## PROTEIN SUPPORTED gi|218290661|ref|ZP_03494752.1| RNA binding S1 domain protein + Term 50302 - 50355 9.0 68 18 Op 3 10/0.000 + CDS 50374 - 51762 1284 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 69 18 Op 4 11/0.000 + CDS 51781 - 52326 782 ## COG0634 Hypoxanthine-guanine phosphoribosyltransferase + Prom 52328 - 52387 2.2 70 18 Op 5 1/0.200 + CDS 52420 - 54576 1339 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 + Term 54581 - 54644 23.2 + Prom 54581 - 54640 5.5 71 19 Op 1 2/0.000 + CDS 54738 - 55634 1127 ## COG1281 Disulfide bond chaperones of the HSP33 family 72 19 Op 2 3/0.000 + CDS 55631 - 56644 554 ## PROTEIN SUPPORTED gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase + Term 56651 - 56687 4.1 + Prom 56650 - 56709 4.1 73 19 Op 3 . + CDS 56738 - 58234 2017 ## COG1190 Lysyl-tRNA synthetase (class II) + Term 58240 - 58270 1.1 Predicted protein(s) >gi|307679228|gb|GL457019.1| GENE 1 54 - 629 647 191 aa, chain - ## HITS:1 COG:STM2772 KEGG:ns NR:ns ## COG: STM2772 COG1961 # Protein_GI_number: 16766084 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Salmonella typhimurium LT2 # 1 178 1 179 190 103 34.0 2e-22 MKRIGYARTTIIEDDLKNQLTTLQSFGCDDIFQETFDPQAEISVLDEVEKLLSAGDTLIV CKLHHLGKTTRQLTDFMKMLKEKQVDFVSISEGIDTHLPTGEAYFQLMESLSAMECALIK ERTLVGLHKARENGKVGGRPKIDGRTVRKIRALYYENKETIQFISNKCGVSVGTCYKYIN LPETDVERLYS >gi|307679228|gb|GL457019.1| GENE 2 671 - 1351 903 226 aa, chain - ## HITS:1 COG:L0045 KEGG:ns NR:ns ## COG: L0045 COG0120 # Protein_GI_number: 15674215 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase # Organism: Lactococcus lactis # 2 222 3 223 224 259 61.0 2e-69 MNLKQMVGIEAAKYVEDGMIVGLGTGSTAKFMVDEIGRRVKEEGLSIVGVTTSKETEKQA LALGIPLKSIDEVPYVDLTIDGADEISADFQGIKGGGAALLFEKIVATYSKKCIWIVDKS KMVDDLGAFPLPVEVVPYGSCQLVHLFKEKGYHPALRLNAAGETLITDGGHHIIDLHLEK ITDPEALGSYLDNLVGVVEHGLFLNMVSMVIVGYEDGPKTLHVPAR >gi|307679228|gb|GL457019.1| GENE 3 1696 - 2109 706 137 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374844|ref|NP_813997.1| 30S ribosomal protein S12 [Enterococcus faecalis V583] # 1 137 1 137 137 276 100 2e-73 MPTINQLVRKPRKSKVEKSDSPALNKGYNSFKKTQTNVNSPQKRGVCTRVGTMTPKKPNS ALRKYARVRLSNLIEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIVRGALDTAGV NDRKQSRSKYGTKRPKA >gi|307679228|gb|GL457019.1| GENE 4 2165 - 2635 806 156 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374845|ref|NP_813998.1| 30S ribosomal protein S7 [Enterococcus faecalis V583] # 1 156 1 156 156 315 100 5e-85 MPRKGPVAKRDVLPDPIYNSKLVTRLINRVMVDGKRGIAANIIYNSFDIIKESTGNDPLE VFEQAMKNVMPVLEVKARRVGGSNYQVPVEVRPERRTTLGLRWVVNYARLRGEHTMEERL AKEIMDAANNTGASVKKREDTHKMADANRAFAHYRW >gi|307679228|gb|GL457019.1| GENE 5 2719 - 4800 2495 693 aa, chain + ## HITS:1 COG:SPy0273 KEGG:ns NR:ns ## COG: SPy0273 COG0480 # Protein_GI_number: 15674452 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Streptococcus pyogenes M1 GAS # 1 691 1 691 692 1188 87.0 0 MAREFSLEKTRNIGIMAHVDAGKTTTTERILYYTGKIHKIGETHEGASQMDWMEQEQERG ITITSAATTAQWKGYRVNIIDTPGHVDFTIEVQRSLRVLDGAVTVLDSQSGVEPQTETVW RQATEYKVPRIVFCNKMDKIGADFFYSVESLHDRLQANAHPIQIPIGAEEDFTGIIDLIK MKAEIYTNDLGTDIQETDIPEDYLEKAQEWREKLVEAVAETDEDLMMKYLEGEEITEEEL VAGIRQATINVEFFPVLAGSAFKNKGVQLMLDAVLDYLPSPLDIDAIKGIDTKTDEETTR PADDEAPFASLAFKVMTDPFVGRLTFFRVYSGVLESGSYVLNASKGKKERIGRILQMHAN TRQEIDKVYSGDIAAAVGLKDTTTGDTLCALDAPVILESIEFPDPVIQVAVEPKSKADQD KMGVALQKLAEEDPSFRVETNVETGETVISGMGELHLDVLVDRMKREFKVEANVGAPQVS YRETFRAATKAEGKFVRQSGGKGQYGHVWVEFTPNEEGKGFEFENAIVGGVVPREYIPAV EKGLEDSMNNGVLAGYPLVDIKAKLYDGSYHDVDSNETAFRVAASMALKAAAKNANPVIL EPMMKVTITVPEDYLGDIMGHVTSRRGRVEGMEAHGNSQIVNAMVPLAEMFGYATTLRSA TQGRGTFMMVFDHYEDVPKSVQEEIIKKNGGNA >gi|307679228|gb|GL457019.1| GENE 6 4951 - 6138 1486 395 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 395 1 407 407 577 70 1e-164 MAKEKFDRSKSHVNIGTIGHVDHGKTTLTAAIATVLSKHGGGEAQSYDSIDNAPEEKERG ITINTSHIEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHI LLSRNVGVPYIVVFLNKMDMVDDEELLELVEMEVRDLLSEYDFPGDDVPVIAGSALKALE GDESYEEKILELMAAVDEYIPTPERDTDKPFMMPVEDVFSITGRGTVATGRVERGEVRVG DEVEIVGIKDETSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDIERGQVLAKPATI TPHTKFKAEVYVLSKEEGGRHTPFFTNYRPQFYFRTTDVTGVVELPEGTEMVMPGDNVAM DVELIHPIAIEDGTRFSIREGGRTVGSGVVTEIVK >gi|307679228|gb|GL457019.1| GENE 7 6320 - 6715 536 131 aa, chain + ## HITS:1 COG:lin0667 KEGG:ns NR:ns ## COG: lin0667 COG0351 # Protein_GI_number: 16799742 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Listeria innocua # 1 128 3 130 271 140 51.0 6e-34 MEKVLTIAGSDSTGGAGIQADLKTFEEYGVFGFSSLTSIVTMDPTTGWSHEVTELPETLL EKQLISVFAGGPVAALKTGMMGNEQNIKMASKYIKQEKIQKVVIDPVIACKGTAQILQPK SVEGLKTIYCH >gi|307679228|gb|GL457019.1| GENE 8 6781 - 7143 424 120 aa, chain + ## HITS:1 COG:lin0667 KEGG:ns NR:ns ## COG: lin0667 COG0351 # Protein_GI_number: 16799742 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Listeria innocua # 1 115 157 271 271 130 56.0 5e-31 MAEMEEAAKRIVQMGAKHVVVKGGHRLAGEKALDLFYDGHTAHLLENELYPTDYNHGAGC TFSAAITAGLAKGYSVLEAVTLAKKFVAAAIKHGIQVNPYVGHVWHGAYTHAEQRMRKKA >gi|307679228|gb|GL457019.1| GENE 9 7414 - 8580 1229 388 aa, chain + ## HITS:1 COG:CAC0877 KEGG:ns NR:ns ## COG: CAC0877 COG2230 # Protein_GI_number: 15894164 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cyclopropane fatty acid synthase and related methyltransferases # Organism: Clostridium acetobutylicum # 7 386 8 386 391 402 52.0 1e-112 MLEKETYSQLFKWSFSKKTQVTYWDGTVKEYGQGSGDPVFKIVFNEKIPVKDLLNNASLT LGEAYMDRKIEIEGDIQALIYDVYNQKDSFLHNAKFIKWLPKESHSKKRSQEDIHSHYDL GNDFYKKWLDQTMTYSCAYFKTPEDTLEQAQVNKVHHILDKLFIKEGDTLLDIGCGWGTL ILTAVKEYGAKATGITLSEEQFHHIRHIIEKEGLQDRMTVKLMDYRDLKGESFDHITSVG MFEHVGAENLHEYFDVVQRNLAPKGTALIHGISRQQGGAKNAWINRYIFPGGYIPGVTEL VGHMTENDLQVIDLESLRRDYQLTLEHWTKNFHNIETEIVDEKGERFYRMWDLYLQACAA SFQASNIDVIQYLLVHPDNNDIPMRRIG >gi|307679228|gb|GL457019.1| GENE 10 8649 - 8783 49 44 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227515486|ref|ZP_03945535.1| ribosomal protein S10 [Lactobacillus fermentum ATCC 14931] # 1 40 14 54 208 23 39 2e-53 RMKRIEKQNKCFSKQEKILLKKRRKSLLTLSFHSIIKKVLFTGV >gi|307679228|gb|GL457019.1| GENE 11 8790 - 8861 67 23 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVDQRFDLPAVKREVATRSDALP >gi|307679228|gb|GL457019.1| GENE 12 8893 - 9237 576 114 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227519991|ref|ZP_03950040.1| 30S ribosomal protein S10 [Enterococcus faecalis TX0104] # 1 114 1 114 114 226 100 2e-58 MSTFKIGEGGNKMAKQKIRIRLKAYEHRILDQSADKIVETAKRTGADVSGPIPLPTERSL YTVIRATHKYKDSREQFEMRTHKRLIDIVNPTPKTVDALMKLDLPSGVNIEIKL >gi|307679228|gb|GL457019.1| GENE 13 9259 - 9888 1059 209 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374851|ref|NP_814004.1| 50S ribosomal protein L3 [Enterococcus faecalis V583] # 1 209 1 209 209 412 100 1e-114 MTKGILGKKVGMTQIFTESGELIPVTVVEATPNVVLQVKTVETDGYEAIQVGYQDKREVL SNKPAKGHVAKANTAPKRFIKEFKNVELGEYEVGKEIKVDVFQAGDVVDVTGTTKGKGFQ GAIKRHGQSRGPMSHGSRYHRRPGSMGPVAPNRVFKNKRLAGRMGGDRVTIQNLEVVKVD VERNVILIKGNIPGAKKSLITIKSAVKAK >gi|307679228|gb|GL457019.1| GENE 14 9914 - 10537 1033 207 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227519993|ref|ZP_03950042.1| 50S ribosomal protein L4 [Enterococcus faecalis TX0104] # 1 207 1 207 207 402 100 1e-111 MPNVALFKQDGTQNGEITLNEEIFGIEPNESVVYDAIIMQRASLRQGTHAVKNRSAVRGG GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSDKVAE NNLVAVEGLSFDAPKTKEFKQVLANLSIDTKVLVVLENGNDFAALSARNLPNVSVVTSDN VSVLDVVSANKVLATQTALTQIEEVLA >gi|307679228|gb|GL457019.1| GENE 15 10537 - 10827 471 96 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|238857874|ref|ZP_04648103.1| ribosomal protein L23 [Enterococcus faecalis TUSoD Ef11] # 1 96 1 96 96 186 100 3e-46 MELLDVIKRPVITEKSMLAMDEKKYTFEVDTRANKTLVKQAVESAFDVKVANVNILNVRP KFKRMGKYVGYTKKRRKAIVTLTEDSKEIQLFEAAE >gi|307679228|gb|GL457019.1| GENE 16 10867 - 11697 1431 276 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374854|ref|NP_814007.1| 50S ribosomal protein L2 [Enterococcus faecalis V583] # 1 276 1 276 276 555 99 1e-157 MAIKKYKPTTNGRRNMTSSDFAEITTSTPEKSLLQPLKNNAGRNNNGRITVRHQGGGHKR QYRVIDFKRNKDNVAAVVKTIEYDPNRSANIALVHYEDGVKAYILAPKGLEVGMRLVSGP EADIKVGNALPLENIPVGTVIHNIEMKPGKGGQLIRSAGTSAQVLGKEGKYVLIRLNSGE VRMILATCRATIGSVGNEQHELINIGKAGRSRWMRKRPTVRGSVMNPNDHPHGGGEGKTP IGRKAPVSPWGQPAIGYKTRNKKAKSDKLIVRRRTK >gi|307679228|gb|GL457019.1| GENE 17 11740 - 12018 486 92 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374855|ref|NP_814008.1| 30S ribosomal protein S19 [Enterococcus faecalis V583] # 1 92 1 92 92 191 100 6e-48 MGRSLKKGPFVDDHLMKKVEAQQGAEKKKVIKTWSRRSTIFPSFVGFTIAVYDGRKHVPV YIQEDMVGHKLGEFAPTRTYRGHVADDKKTKR >gi|307679228|gb|GL457019.1| GENE 18 12034 - 12387 564 117 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227519997|ref|ZP_03950046.1| 50S ribosomal protein L22 [Enterococcus faecalis TX0104] # 1 117 1 117 117 221 100 6e-57 MQMSEQITSAKATAKTVRTSPRKARLVIDLIRGKSVADAISILKFTPNKSAGIIEKVLMS AVANAENNFDLDVESLVVSEAFVNEGPTMKRFRPRAKGSASPINKRTSHITVVVTEK >gi|307679228|gb|GL457019.1| GENE 19 12454 - 13110 1112 218 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374857|ref|NP_814010.1| 30S ribosomal protein S3 [Enterococcus faecalis V583] # 1 218 1 218 218 432 99 1e-120 MGQKVHPIGMRVGIIRDWDAKWYAEKEYAEFLHEDLRIRKFIATKLADAAVSTIEIERAA NRVNISIHTAKPGMVIGKGGSEVENLRKELNKLTGKRVHINIVEIKKPDLDAKLVGEGIA RQLENRVAFRRAQKQAIQRAMRAGAKGIKTQVSGRLNGADIARSEGYSEGTVPLHTLRAD IDYAWEEADTTYGKLGVKVWIYRGEILPTKKNTEKGGK >gi|307679228|gb|GL457019.1| GENE 20 13113 - 13547 753 144 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374858|ref|NP_814011.1| 50S ribosomal protein L16 [Enterococcus faecalis V583] # 1 144 1 144 144 294 100 7e-79 MLVPKRVKHRREFRGKMRGEAKGGKEVAFGEWGLQATESHWITNRQIEAARIAMTRYMKR GGKVWIKIFPHKSYTSKAIGVRMGKGKGAPEGWVSPVKRGKIMFEIAGVPEEVAREALRL ASHKLPVKTKIVKREEMGGESNEG >gi|307679228|gb|GL457019.1| GENE 21 13537 - 13725 296 62 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374859|ref|NP_814012.1| ribosomal protein L29 [Enterococcus faecalis V583] # 1 62 1 62 62 118 100 7e-26 MKVKEIRELTTAEMLDKEKQLKEELFNLRFQLATGQLENTARIKEVRQSIARIKTVLREQ AN >gi|307679228|gb|GL457019.1| GENE 22 13728 - 14015 476 95 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227520001|ref|ZP_03950050.1| 30S ribosomal protein S17 [Enterococcus faecalis TX0104] # 1 95 1 95 95 187 98 9e-47 MEGGQTRMTEERNQRKVYQGRVVSDKMDKTITVVVETKKNHPIYGKRMKYSKKYKAHDEN NTAKVGDIVKIMETRPLSATKRFRLLEVVEEAVII >gi|307679228|gb|GL457019.1| GENE 23 14073 - 14441 591 122 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374861|ref|NP_814014.1| ribosomal protein L14 [Enterococcus faecalis V583] # 1 122 1 122 122 232 99 4e-60 MIQQESRLRVADNSGAREILTIKVLGGSGRKTANIGDVIVATVKQATPGGVVKKGEVVKA VIVRTKSGARRADGSYIKFDENAAVIIRDDKSPRGTRIFGPVARELRENNFMKIVSLAPE VL >gi|307679228|gb|GL457019.1| GENE 24 14477 - 14788 517 103 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374862|ref|NP_814015.1| 50S ribosomal protein L24 [Enterococcus faecalis V583] # 1 103 1 103 103 203 100 2e-51 MFVKKGDKVKVITGKDKNKEGVVLAAFPKQDKVIVEGVNVVKKHQKPNQAAPQGGILEVE APIHVSNVMVIDPSNGEATKVAFKEVDGKKVRVSKKTGEVLDK >gi|307679228|gb|GL457019.1| GENE 25 14814 - 15353 896 179 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374863|ref|NP_814016.1| 50S ribosomal protein L5 [Enterococcus faecalis V583] # 1 179 1 179 179 349 100 2e-95 MNRLKEKYIKEVTPSLVEKFNYSSVMQTPKVDKIVINMGVGDAVSNAKNLDKAVEELALI TGQKPLITKAKKSIAGFRLREGMPIGAKVTLRGERMYEFLDKLVTVSLPRVRDFHGVSKK AFDGRGNYTLGIKEQLIFPEVDYDLVDKVRGMDIVIVTTANTDEESRELLAQLGMPFQK >gi|307679228|gb|GL457019.1| GENE 26 15372 - 15557 333 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374864|ref|NP_814017.1| 30S ribosomal protein S14 [Enterococcus faecalis V583] # 1 61 1 61 61 132 98 3e-30 MAKKSMIAKNKRPAKHSTQAYTRCERCGRPHSVYRKFHLCRICFRELAYKGQIPGVKKAS W >gi|307679228|gb|GL457019.1| GENE 27 15593 - 15991 660 132 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374865|ref|NP_814018.1| 30S ribosomal protein S8 [Enterococcus faecalis V583] # 1 132 1 132 132 258 100 4e-68 MVMTDPIADFLTRIRNANMVKHETLEVPASKIKRDIAEILKREGFIRDVEYIEDDKQGVI RVFLKYGKNEERVITNLKRISKPGLRAYVKADEVPKVLNGLGIAIISTSEGVITDKEARA KNIGGEVIAYVW >gi|307679228|gb|GL457019.1| GENE 28 16023 - 16559 909 178 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227520007|ref|ZP_03950056.1| 50S ribosomal protein L6 [Enterococcus faecalis TX0104] # 1 178 1 178 178 354 99 5e-97 MSRIGNKVVVLPAGVEIKQDGNNITVKGPKGELTREFSSDIKMNIEGNEVTFTRPNDSKE MKTIHGTTRANFNNMVVGVSEGFQKALELIGVGYRAQVQGNKLTLNVGYSHPVEMTAPEG VTFEVPANTQVIVKGINKEVVGELAANIRGVRPPEPYKGKGIRYVGEFVRRKEGKTGK >gi|307679228|gb|GL457019.1| GENE 29 16711 - 17076 599 121 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227520008|ref|ZP_03950057.1| 50S ribosomal protein L18 [Enterococcus faecalis TX0104] # 1 121 1 121 121 235 99 5e-61 MKIVITKPDKNKTRQKRHRRVRNKISGTAECPRLNIFRSNKNIYAQVIDDVAGVTLASAS ALDKEISGGTKTETAAAVGKLVAERAAEKGIKKVVFDRGGYLYHGRVQALAEAARENGLE F >gi|307679228|gb|GL457019.1| GENE 30 17097 - 17597 817 166 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374868|ref|NP_814021.1| ribosomal protein S5 [Enterococcus faecalis V583] # 1 166 1 166 166 319 100 3e-86 MVYIDPKHLELEDRVVAINRVTKVVKGGRRLRFAALVVVGDKNGHVGFGTGKAQEVPEAI RKAIEDAKKNLVEVPMVGSTIPHEVIGVFGGGRILMKPAVEGSGVAAGGPVRAVLELAGV ADITSKSLGSNTPINVVRATVEGLKQLKRAEEVAALRGKSVEEIIG >gi|307679228|gb|GL457019.1| GENE 31 17612 - 17791 286 59 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374869|ref|NP_814022.1| ribosomal protein L30 [Enterococcus faecalis V583] # 1 59 1 59 59 114 100 9e-25 MAELKITLKRSVIGRPQNQRATVKALGLGKVNSTVTKPANEAIKGMVNTISHLVDVEEV >gi|307679228|gb|GL457019.1| GENE 32 17839 - 18279 731 146 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374870|ref|NP_814023.1| 50S ribosomal protein L15 [Enterococcus faecalis V583] # 1 146 1 146 146 286 100 2e-76 MKLHELKPAEGSRQVRNRVGRGTSSGNGKTAGRGQKGQKARSGGGVRLGFEGGQTPLFRR LPKRGFTNINRKDYAVVNLDTLNRFEDGTEVTPVVLKEAGIVKNEKAGIKVLADGELTKK LTVKAAKFSKSAQEAIEAAGGSIEVI >gi|307679228|gb|GL457019.1| GENE 33 18280 - 19578 762 432 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 [alpha proteobacterium BAL199] # 10 432 19 439 447 298 38 6e-80 MFKLLKNAFKVKDIRSKILFTVLILFVFRLGAHITVPGVNAKGLSDLSSLPFLNMLNMVS GSAMQNFSIFSMGVSPYITASIIIQLLQMDIVPRFVEWSKQGEVGRKKLNQATRYLTIVL GVAQSMGITAGFNSLSQTGIVNNPTLGTFVMIAVILTAGTMFVTWMGEQITEKGIGNGVS MIIFAGIISRLPGAVKEIYEDYFVNIESSRIWQSVIFIAILVIAILVIVTVVTFFQQAER KIPIQYTKRVSGAPTSSYLPLKVNAAGVIPVIFASSLIATPNAILQAFSSKFAGENWYDI MTKIFSYNTVPGAIIYTVLIVAFTFFYAFVQVNPEKLAENLQKQGSYIPSVRPGKGTEEY VSGVLMRLSVVGSIFLGLVALLPIIAQMVWNLPQSIGLGGTSLLIVIGVALETTKQLEGL MMKRQYVGFINK >gi|307679228|gb|GL457019.1| GENE 34 19665 - 20315 929 216 aa, chain + ## HITS:1 COG:L140714 KEGG:ns NR:ns ## COG: L140714 COG0563 # Protein_GI_number: 15674059 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Lactococcus lactis # 1 213 1 214 215 300 68.0 9e-82 MNLILMGLPGAGKGTQAEKIIDTYGIPHISTGDMFRAAMKNETALGLEAKSYIDKGELVP DEVTNGIVKERLAEPDTDKGFLLDGFPRTLDQAKALDTMLKELNKKIDAVIDIHVEEDVL IERLAGRFICRTCGATYHKLFNPPKVEGTCDRCGGHEFYQREDDKPETVKNRLAVNIESS APILAFYKEQGLMHTIDGNREIDTVFSDVKKIIDEN >gi|307679228|gb|GL457019.1| GENE 35 20459 - 20548 66 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGAGVSAVLSCENAKQVQGGTVRGKRRYD >gi|307679228|gb|GL457019.1| GENE 36 20526 - 20744 311 72 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 [Streptococcus pneumoniae TIGR4] # 1 72 1 72 72 124 81 1e-27 MAKEDMIEVEGTVVETLPNAMFKVELENGHQVLATVSGKIRMHYIRILPGDKVTVELSPY DLTRGRITYRFK >gi|307679228|gb|GL457019.1| GENE 37 20777 - 20893 210 38 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374874|ref|NP_814027.1| 50S ribosomal protein L36 [Enterococcus faecalis V583] # 1 38 1 38 38 85 100 6e-16 MKVRPSVKPMCEHCKVIRRKGRVMVICPANPKHKQRQG >gi|307679228|gb|GL457019.1| GENE 38 20913 - 21278 599 121 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374875|ref|NP_814028.1| 30S ribosomal protein S13 [Enterococcus faecalis V583] # 1 121 1 121 121 235 99 5e-61 MARIAGGDIPRDKRVVVSLTYIYGIGNTTAKKVLANVGVSEDVRVRDLTNEQTDAIRAEI DKLKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPTRGQNTKNNARTRKGPTKTVAGKK K >gi|307679228|gb|GL457019.1| GENE 39 21306 - 21695 654 129 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374876|ref|NP_814029.1| 30S ribosomal protein S11 [Enterococcus faecalis V583] # 1 129 1 129 129 256 100 2e-67 MAAKKVSRKRRVKKNIESGVAHIHSTFNNTIVMITDTHGNALAWSSAGSLGFKGSKKSTP FAAQMAAEAATKVAMEHGLKTVDVTVKGPGSGREAAIRSLQATGLEVTAIRDVTPVPHNG CRPPKRRRV >gi|307679228|gb|GL457019.1| GENE 40 21776 - 22714 1238 312 aa, chain + ## HITS:1 COG:BS_rpoA KEGG:ns NR:ns ## COG: BS_rpoA COG0202 # Protein_GI_number: 16077211 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, alpha subunit/40 kD subunit # Organism: Bacillus subtilis # 1 312 1 314 314 431 74.0 1e-121 MIEFEKPRIEKIDENRDYGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAITNIQIDGVL HEFSTIPGVREDVTQIILNIKGLALKLYAEEEKTLEIDITGPATVTAGDIIVDSDVEILN KDLVICSVAEGATFHARLTVKPGRGYVQADENKKEDMPIGVLPVDSIYTPVRRVNYQVEN TRVGRRDDFDKLTMEIWTDGSIIPQEALSLAAKIMTEHLDIFVNLTDEAKNAEIMVEKEE TQKEKMLEMTIEELDLSVRSYNCLKRAGINTVQELTNKSEPEMIKVRNLGRKSLEEVKLK LHDLGLGLRKDD >gi|307679228|gb|GL457019.1| GENE 41 22788 - 23171 618 127 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29374878|ref|NP_814031.1| 50S ribosomal protein L17 [Enterococcus faecalis V583] # 1 127 1 127 127 242 99 3e-63 MSYRKLGRTSSQRKAMLRDITTDLIINERIVTTEARAKEVRSTVEKMITLGKRGDLHARR QAATFVRNEVASVREEDESIVVESALQKLFNDLGPRFAERQGGYTRILKTEPRRGDAAPM VVIEFVK >gi|307679228|gb|GL457019.1| GENE 42 23446 - 24645 1350 399 aa, chain + ## HITS:1 COG:no KEGG:EF0235 NR:ns ## KEGG: EF0235 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 399 1 399 399 659 99.0 0 MSQMFAFSLLMVILYIGDVVSIKTKAWIPSVFVCGVLFILGYWTIFPQNIVEVAGIPTVV ATLLMYLLITNMGTLLSVKELVNQWKTIVIALSGILGIIALLLAVGTFVFDLKTVLVAIP PLVGGLVSSLVMSEAAQSAGLASLSVLAILIYVIQGFAGYPLTSIVLKKEGKRKLQEYRA GTWQPVHEQEGQETGAEPDVPKLFEKVPKRYHTDYSRILRLALVATLAYYVSVWTAPFVT ISPFVLCLCFGVIATSLGFLEKQPLQKANSFGFAILGLMLFVFDGLKQATPEMLMDLFLP MIGIIVIGVIGMYIFSAIVGRVLGVSKEMAFAVSLTALYGFPADYVITNEVIQSLTEDEQ EQAALTSHLMPPMLVAGFVTVTIVSVILAGIFSSILLSL >gi|307679228|gb|GL457019.1| GENE 43 24661 - 25836 1313 391 aa, chain + ## HITS:1 COG:lin0542 KEGG:ns NR:ns ## COG: lin0542 COG1473 # Protein_GI_number: 16799617 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Listeria innocua # 3 387 4 388 393 565 71.0 1e-161 MKKIKALVKQHAQEMIAFRRDLHQHPELQFEEFRTTEKVAAVLDQLGITYRKTEPTGLIA EIVGGKPGRVVALRADMDALPVQELNEDLAYKSLEAGKMHACGHDSHTAMLVTAAKVLKE IQEELQGTVRLIFQPSEENAQGAKAMVAQGAMTGVDDVFGLHIWSQMPVGTASCRVGSSF ASADIFSVDFKGRGGHGAMPNACIDAAVIASSFVMNLQTIVSRETDPLDPVVVTIGRMDV GTRFNVIAENARLEGTVRCFSVATRNRVEQALQRYAEQTAAIYGGTASLDYQYGTLPVIN DEQDALFAQTLIKENFGEAALRQEEPTTGGEDFSYYTEHASGCFALVGSGNPEKDTEWAH HHGRFNIDEDAMAMGAELYAQYAFEYLKTHF >gi|307679228|gb|GL457019.1| GENE 44 26038 - 26877 1100 279 aa, chain + ## HITS:1 COG:L75718 KEGG:ns NR:ns ## COG: L75718 COG1122 # Protein_GI_number: 15672259 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Lactococcus lactis # 1 272 1 272 277 317 58.0 2e-86 MQPIIELNNIQFNYQPEDASPALKDVSFSIQQGEWVAIIGHNGSGKSTLAKTINGLLLPA AGTIKVGGKELNEANVWDIRRMVGMVFQNPDNQFVGSTVEDDVAFGLENQGIPRDEMVER VHDALERVRMLDFAKREPARLSGGQKQRVAIAGVVALRPDIIILDEATSMLDPEGRAEVI ATIQKIKEESNLTVISITHDIDEAANANRILVMRQGQLTNEGTPEKIFSAGEALVEMGLD LPFPEKLKVALKERGVVVPTNYLTEEGMVDWLWTSVLNK >gi|307679228|gb|GL457019.1| GENE 45 26853 - 27722 440 289 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 5 278 132 396 398 174 38 1e-42 MDIRFKQVDFTYQPNTPFEQRALFDINLTIQDGSYTAIVGHTGSGKSTLLQHLNALVKPT KGQVTIGERVITPETDNKNLKPIRKKVGIVFQFPEAQLFEETVERDIAFGPKNFGVSDEE AKKLAKKMLDLVGLDEKYLQHSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKG RKEMMEMFSRLHKEHNMTIVLVTHLMDDVANYADHVIVLEKGQIVRAGAPQEVFQETQWL KEKQLGVPTAAEFAEKLVAKGFSFEQLPLTADQLADQLLKKMQEAGEAK >gi|307679228|gb|GL457019.1| GENE 46 27722 - 28516 782 264 aa, chain + ## HITS:1 COG:lin2783 KEGG:ns NR:ns ## COG: lin2783 COG0619 # Protein_GI_number: 16801844 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Listeria innocua # 1 249 2 250 266 318 63.0 6e-87 MNKLIFGRYIPGDSFIHRLDPRAKLLASFYFIGIIFLANNWQSYVLIAAFTAFAISLSKI SARFFIRGVRPLLWLILFTVALQTLFTQGGEVYFQWGIISITQFGVTNGLFIFCRFVLII FMSTLLTLTTAPLELSDAIEYLLRPLRVVKFPVHEVSLMLSIALRFVPTLMDETEKIMNA QRARGVDFGEGNLLQKMKAIVPLLIPLFVSSFNRAEDLATAMEARGYQGGEGRTKYRILH WHLRDTIVMFGFVLLTIGLFVLRT >gi|307679228|gb|GL457019.1| GENE 47 28535 - 29284 819 249 aa, chain + ## HITS:1 COG:SP1599 KEGG:ns NR:ns ## COG: SP1599 COG0101 # Protein_GI_number: 15901439 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Streptococcus pneumoniae TIGR4 # 1 248 1 248 249 321 63.0 1e-87 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGHSVTVFGSGRTDAGVHAMG QVIHFDYPQERPLEKMRFALDTQTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIGKP RSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKIRTIHEASVHVNE TGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPEGL YLAEVKYEN >gi|307679228|gb|GL457019.1| GENE 48 29335 - 29646 585 103 aa, chain - ## HITS:1 COG:L158972 KEGG:ns NR:ns ## COG: L158972 COG0393 # Protein_GI_number: 15672916 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 101 5 104 108 92 53.0 1e-19 MLVTTTERISGQEYEIIGEVFGLTTRSKNMFKDLGAGLKSVVGGEIKGYTDMQREARDQA IERLKAEASKLGADAVVMMRFDSGTIGTDMQSVVAYGTAVKYI >gi|307679228|gb|GL457019.1| GENE 49 29779 - 31134 1730 451 aa, chain - ## HITS:1 COG:SA0180 KEGG:ns NR:ns ## COG: SA0180 COG1114 # Protein_GI_number: 15925890 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Staphylococcus aureus N315 # 1 428 1 428 449 457 60.0 1e-128 MQKKLVWRDYLYVGSMLFGLFFGAGNLIFPVHMGQEAGASVFLANLGFLATGIGLPFLGV IAMGVSKSSGVFDLASRINRRYALIFTLLLYLTIGPFFALPRLATTSFEIGLAPFVPKDL QWLVLAGFSALFFLAVWLFSRKPSKILDYVGKFLNPLFLALLGILIVLAFVKPLGHVASA AVGENYISSPFFKGFTEGYNTLDALASLAFGIVVVSTLRNMGVEKPGDIAKGMIKSGAFS VVLMGIIYTLLAYMGTMSIGAFPISENGGIALAQIANYYLGLPGSILLAFIVVLACLKTG IGLSTAFSETFEEMFPKVSYQKFLAIVVILPAIFANVGLTNIIQFAVPVLMFLYPLAITL MLLVIISPIFKHRREVYQATTYITLIAAVLDALNSAPAFIKDTAFVTTLLEKAGQYLPLF TIGMGWVVPATVAFLISWVWVMISKKDPILD >gi|307679228|gb|GL457019.1| GENE 50 31225 - 31716 470 163 aa, chain - ## HITS:1 COG:lin2246 KEGG:ns NR:ns ## COG: lin2246 COG0454 # Protein_GI_number: 16801311 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Listeria innocua # 5 161 1 157 157 105 35.0 3e-23 MSTSLTIRLVAEADWPALHTLDQIIWTKKNTPAEIQPLSLAAYQEKMKDETIFVAISGQQ LAGFIEVHPPTSLAAHQKQWLLSIGVSPDFQGQGIGGSLLSYVKDMAQISGIHKLSLRVM ATNQEAIRFYEKHGFVQEAHFKEEFYINGHYCDDYQYAYFIEK >gi|307679228|gb|GL457019.1| GENE 51 31905 - 32474 664 189 aa, chain + ## HITS:1 COG:FN0535 KEGG:ns NR:ns ## COG: FN0535 COG1611 # Protein_GI_number: 19703870 # Func_class: R General function prediction only # Function: Predicted Rossmann fold nucleotide-binding protein # Organism: Fusobacterium nucleatum # 2 187 4 189 192 205 51.0 4e-53 MKKMAVYCGASLGNEPIYQQAAVALAAWMKENHYDLVYGGGNVGLMGTVADTLLAEGGEV IGVMPTFLMEREIAHNGITKMHTVSDMHARKKKMIELADVYLALPGGPGTLEEISEVISW GRVGEHMNPCILYNVNGYYDLLAAFFDKMVETSFLTEADRAKIFISDSLEEIGAFIDSYE PPMIRQYKN >gi|307679228|gb|GL457019.1| GENE 52 32521 - 33261 279 246 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 226 1 223 305 112 30 6e-24 MSAIIEIEHLRKSFGENEVLKDINMNVNKGEVVTIIGSSGSGKSTLLRCINLLEKPTDGK IIYNGKNVLERGYSLPKYRTHLGMVFQSFNLFNNMNVLENCTSGQMTVLKRNKEEAKKIA LENLEKVGMARFIDAKPAQLSGGQKQRVAIARALSMDPDVLLFDEPTSALDPEMVGEVLK TMKNLAHTGLTMVIVTHEMEFARDVSDRVIFMDKGVIAEEGTAEDIFVHPKEARTKEFLH RILTKN >gi|307679228|gb|GL457019.1| GENE 53 33273 - 34856 2030 527 aa, chain - ## HITS:1 COG:SPy0277_2 KEGG:ns NR:ns ## COG: SPy0277_2 COG0765 # Protein_GI_number: 15674455 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 287 510 2 221 239 300 65.0 5e-81 MNKKVFSFSLLLVTLFSLLGMTTNASAEENGEFRVGMEAGYAPFNWSQKNDAHGAVPIQG NSYAGGYDVQISKKIADGLGRKLVIVQTKWDGLAPALQSGKIDAIIAGMSPTAERKKEIA FTNPYYESQFVVIVKKDGKYANAKNLKDLADAKITAQLNTFHYGLIDQIPNVNKQQAMDN FSAMRTALASGMIDGYVSERPEGITATSVNKELKMLEFPKENGFDASAEDSQVAVGMRKG DPDIEKVNKILAGISQDERTKIMDQAIKDQPAATDSDEQKTGLINDFKNIWNQYGDMFLR GAGLTLFIALIGTVVGTTLGLLIGVFRTIPDSENPVARFFQKLGNLILSIYIEVFRGTPM MVQAMVIFYGLALAFGISLDRTVAALFIVSVNTGAYMSEIVRGGIFAVDKGQFEAAQAIG MTHGQTMRKVVIPQVLRNILPATGNEFVINIKDTAVLSVIGVADLFFQGNAASGANFQFF QTFTIVGIMYLVMTFVITRILRVVERKMDGPSAYVKVEELTEEGKES >gi|307679228|gb|GL457019.1| GENE 54 35415 - 35711 428 98 aa, chain - ## HITS:1 COG:no KEGG:EF0248 NR:ns ## KEGG: EF0248 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 98 1 98 98 134 100.0 1e-30 MVAFIIYWAAIIACIAWGVLSIWFSVFYLSRKENGNLWAFAFFNVIAIIALAIVLLVYKT WDFGILTYSSLIYTILASLGVLTVLQAILGREPKAVKA >gi|307679228|gb|GL457019.1| GENE 55 35884 - 36597 804 237 aa, chain + ## HITS:1 COG:lin2882 KEGG:ns NR:ns ## COG: lin2882 COG0846 # Protein_GI_number: 16801942 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Listeria innocua # 17 233 12 229 229 268 55.0 6e-72 MQDITQAEAIHWLATQQKITFLTGAGISTASGVPDYRSLKGVYQGIQQPEYLLSRTCLKT EPEKFYQFVKTLYHPDAQPNIIHQKMAQLEQMKRGKIVSQNIDGLHRKAGSQEVVDFHGN LYECYCQTCGATVPWQDYLLSDRHADCHGQIRPAITLYEEGLSEEAIEKAIQAVASADLI VIVGTSFQVHPFCDLIHYKQPTATILAINQTPLFLQQPYYFLEAKAETIFAELTIKE >gi|307679228|gb|GL457019.1| GENE 56 36602 - 37447 1015 281 aa, chain + ## HITS:1 COG:ylaD KEGG:ns NR:ns ## COG: ylaD COG0110 # Protein_GI_number: 16128443 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Escherichia coli K12 # 6 185 3 183 183 215 56.0 9e-56 MEEFKSEKEKMIAGALYFASDPELVADRKKAREQMALINQQPDTYIRRQLIEETFGKVGV GTYIEPMIQFDYGYNISVGKNFYANFNNVFLDVCPIEIGDNCMFGPNVQLYTAEHPLQAA KRNSGMESGKRIIIGNNVWIGGGTIVLPGVTLGDNVVVAAGAVVTKSFPENCVIAGNPAR IIKELTEDDTPTTSLEQQRAKINQIDKELVRLLEQRMDVVAEIAAVKKKAGHAVFDSERE QQVLETILNHVENAEYEETLSETFQGIMDASKRFQEKHLGE >gi|307679228|gb|GL457019.1| GENE 57 37458 - 37970 566 170 aa, chain + ## HITS:1 COG:SPy1427 KEGG:ns NR:ns ## COG: SPy1427 COG1827 # Protein_GI_number: 15675342 # Func_class: R General function prediction only # Function: Predicted small molecule binding protein (contains 3H domain) # Organism: Streptococcus pyogenes M1 GAS # 1 170 1 172 173 135 41.0 3e-32 MDGEIRRREIVKRLRETEKPISATRFAKAFDVSRQIIVGDVALLRATGVEIVATARGYML EQPLEGIERKIACQHTPEQTREELSVIVAKGGEVVDVSIAHPLYGELIGSLRIQSEKDID KFMDKYQKEHATLLSVLTGGVHLHTIRCADEETFQEIKEALRKKSILFEG >gi|307679228|gb|GL457019.1| GENE 58 38204 - 39709 1588 501 aa, chain + ## HITS:1 COG:SA2437_1 KEGG:ns NR:ns ## COG: SA2437_1 COG1705 # Protein_GI_number: 15928230 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Staphylococcus aureus N315 # 48 364 162 475 502 153 34.0 8e-37 MKKQFAMFSTLLLLGSSMPVGAFAEGNNLVAENSSVAETTAEATTAEDTETTATSETTEA TEESTTETESSTESSESTTTESTETSGTETTDSTTDSTSTSTTESTTDSTSTSTTESTTD STSTSTTESSTTPTTTPSSSKEQPKPGTSTSESKQPAKPVTPTAPAEKPVEQPVASTPQP EIVPPVTNETVGLVEDDETFTVSKTKKTEEFIQEIGESARKVAKDKNLYASVMIAQAILE SGSGNSKLSQKPNYNLFGIKGDYKGQSVSFITYEDNGFGNLYTVEAKFRQYPTYKESMED YAKLLKNGLDSNKDFYHGVWKTEAKSYKEATRFLTGKYATDKDYHKKLNALIKTYDLTYY DKEKATVEPMESNFPAYNGKNYDTFNSYAWGNCTQYVYNRITQLGKRVDLTMGNGQDWGE TGRARGYKVSRTPKAGAAVSFPAGVLGADNTYGHVAFVEKVFKDGSILISEMNVKGLNVV STRTISADETHLMNYIVPKDK >gi|307679228|gb|GL457019.1| GENE 59 39986 - 41476 1816 496 aa, chain + ## HITS:1 COG:FN0454 KEGG:ns NR:ns ## COG: FN0454 COG1012 # Protein_GI_number: 19703789 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Fusobacterium nucleatum # 6 496 1 491 491 620 60.0 1e-177 MSKKEINQVVASSYQLYINGEWTTGSGNKMIASYNPSNGEKLAEFVDATNADVDRAVEAA QEAFQIWKDVDVVTRSNLLLKIADLIEENQEHLAMVETLDNGKPLRETQSIDVPASADHF RYFASVIRGEEGSVKEFDKDTLSIVVKEPIGVVGQIIPWNFPLLMGAWKLAPALAAGNTV VIHPSSSTSLSLLELFKIFDQVLPKGVVNLITGRGSDSGNYMLAHPGFDKLAFTGSTEVG YTVAKAAADRLIPATLELGGKSANIIFEDANWERALEGVQLGILFNQGQVCCAGSRVFVQ SGIYDQFVEALKEKFEQVNVGFPWEKDVEMGAQINEHQLEEILKYVEIGVKEGATLITGG QRLTENGLDKGAFLAPTLLANGTNTMCVAQEEIFGPVATVIKFETEEEVIRLANDSEYGL GGAVFSQDINVALRVARGVRTGRMWVNTYNQLPAGAPFGGYKKSGIGRETHKSMLDAYTQ MKNIYIVTKEEADGLY >gi|307679228|gb|GL457019.1| GENE 60 41703 - 42686 1229 327 aa, chain - ## HITS:1 COG:SPy1151 KEGG:ns NR:ns ## COG: SPy1151 COG0039 # Protein_GI_number: 15675128 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Streptococcus pyogenes M1 GAS # 6 326 3 324 327 473 75.0 1e-133 MTAAAGNKDHQKVILVGDGAVGSSYAFALVTQNIAQEVGIIDINVPKTEGDALDLSHALA FTSPKKIYAATYDDCHDADLVVLTAGAPQKPGETRLDLVHKNLKINKEIVTTIVDSGFNG IFLVAANPVDILTYSTWKFSGFPKERVIGSGTSLDSARFRQAIAELVDVDARNVHAYILG EHGDTEFPVWSHANVAGLQIYEWVKNNPDVDEEAMVNLFFNVRDAAYTIIEKKGATFYGI AVALARITKAILNDENSVLPLSVYLEGEYGQNDIYIGAPAIINRQGVKQVIEIPLTDAEQ EKMEASASALKEVIETAFAKFEAEEAK >gi|307679228|gb|GL457019.1| GENE 61 42904 - 43083 84 59 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLCFVSLYLLPGFPSPTITFIFHSPWIISLPTQNGWEAYALPSFIHYTIEIKKLAVFED >gi|307679228|gb|GL457019.1| GENE 62 43022 - 43588 618 188 aa, chain + ## HITS:1 COG:SP0005 KEGG:ns NR:ns ## COG: SP0005 COG0193 # Protein_GI_number: 15899954 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptidyl-tRNA hydrolase # Organism: Streptococcus pneumoniae TIGR4 # 2 187 3 189 189 223 57.0 1e-58 MKVIVGLGNPGSKYKETKHNIGFITLDEIAYRQNVSFNNSNFEADIAEFFIGTEKVLLVK PLTFMNESGRSVGPLLTYFGVDEEDLIVIYDDLDLEVGKIRLRQKGSAGGHNGIKSLIAH LGTNVFPRIKIGIGRPSKNDTVIHHVLSTFPKETHEEMLLAVKKAADAALYACEGHTFVE TMNQFNGK >gi|307679228|gb|GL457019.1| GENE 63 43608 - 47147 3778 1179 aa, chain + ## HITS:1 COG:lin0246 KEGG:ns NR:ns ## COG: lin0246 COG1197 # Protein_GI_number: 16799323 # Func_class: L Replication, recombination and repair; K Transcription # Function: Transcription-repair coupling factor (superfamily II helicase) # Organism: Listeria innocua # 27 1166 28 1168 1179 1183 53.0 0 MNIIERISQTEIAKSWRSQLMTTGTRQLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLY YANQLVDDFLNILPSEQVHLFPVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVP VAGLRKYLPTKETWQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIV DVYPLNAEYPVRVELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMT RLQDALEKRLATAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLYQQKTTLLDYL PENSLLFVDDYSRMMETEREIAREEAEWQTLKIEEMRVFSEQTFGVDFHDQLRKTARNTT FFSLFQKGMGNLRFQEVHNFQYRSMQQFFGQMPLLKAEVDRWQKQNQTVVVFVPTKERIQ KVEELFQDFDIPSVVSNWDQLLDGHVQIVQGALQTGFELPKNKLVAITEKEIFHTTTKKR ARRQTISNAERLKSYSDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDDKL FIPVTQLNLIQKFVASESKTPKINKLGGSEWTKTKRKVASKIEDIADDLILLYATRESEK GYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVAL RAAFKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFPVEIGLLSRFRTKKQQNETIEKI KHGQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPI PRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRV DTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPN ANTLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTEL GSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVARKQGKNIQDQKTSVE IDLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYEELEADLLDRFGEYPDEVAHLLTT GRIKMDGDRALLESIRKRDQKVKFVLSKIGTKTYSVEQLFEALSATSLKADLAVEKEQMT ISLKLPKDCKEAVWIQEIAAFTTALRQEKYKHSQETDSL >gi|307679228|gb|GL457019.1| GENE 64 47163 - 48752 1692 529 aa, chain + ## HITS:1 COG:lin0247 KEGG:ns NR:ns ## COG: lin0247 COG2244 # Protein_GI_number: 16799324 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Listeria innocua # 1 527 1 524 529 300 36.0 6e-81 MAQKEMQRMMQGAVVLTIASFIAKVLSAFYRVPFQNFVGDEGFYVYQQVYPIYGIAMTLA LSGLPQFISKIVAEQPDIRSQKQVLRQLYPYVLWLAIACWAFFFFGSQEIAISMGDAALQ PLMEVVSFTFLLVPILSFYRGNFQGHLLMVPSGISQVMEQFVRVGVILVAALSYHYFGGS IYQTGTVAMSGALAGGVLAVLVLWYYNRKILSGSTEYLHQWKIMPQTTGLFKRLMIEGGL VSLYSAFLILFQLIDSFKVKNALMLFGLSDLAAKVDKGVYDRGQPLVQLGLVIALALSST FLPGLTKYFMKKDRQQFLQVAKIFLRLTTTLASAASIGLMMLLPYMNFTLFKDYKGNDVL GVYVLSIAFMAIIQAYQSIEQSRNRFKGPLVAAGVGLLVKLLTTGFFTIRWGTLGASWST ILGLLATLFVLVRQSDAAINCFVRERNFLKKLLLSLAIMMLSLLVYQGIISILFQGVHHR SQAFFVTVLGVAVGGTVFISTIIKLELFTIREWLSLPYGAKILRMRQKK >gi|307679228|gb|GL457019.1| GENE 65 48767 - 49030 419 87 aa, chain + ## HITS:1 COG:L1001 KEGG:ns NR:ns ## COG: L1001 COG1188 # Protein_GI_number: 15671997 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) # Organism: Lactococcus lactis # 1 87 17 103 105 97 71.0 7e-21 MRLDKFLKVSRIIKRRTVAKEVADKGRIQINGVLAKSSSTVKIGDLVKIQFGNRILEVEV LQLNDSTKKEDATKMYEIKSETRVSEE >gi|307679228|gb|GL457019.1| GENE 66 49285 - 49764 429 159 aa, chain + ## HITS:1 COG:no KEGG:EF0261 NR:ns ## KEGG: EF0261 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 159 1 159 159 199 100.0 2e-50 MGKNEKNSKKVAALENDYTKEQYVEFQKQQKQLIFRRRRLAAIFLVAFIIFAFSGIQLMK DYHRLGAFKQERADAIAESVAVDKKVKDLKKDVALLKDDDYVAKLARSRFLLSKEGEQIY PTPEQMKKTQTSGAEESKSSSEKNSQSQSSTETTKSSAE >gi|307679228|gb|GL457019.1| GENE 67 49809 - 50288 361 159 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|218290661|ref|ZP_03494752.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius LAA1] # 1 159 1 134 134 143 49 2e-33 MSIEVGAKLPGKVSGITNFGAFIDLGEGKTGLVHISEVSNGFVKDIHDVLTVGDEVTVKV TSVGDDGKIGLSIRKAQEPAEGQQPKREFQRRENNYENRDRNPRAGGKKPFNKPQANNNN NKQDFDSLMSSFLKDSDDRLSSLKRNTEGKRGGRGGRRG >gi|307679228|gb|GL457019.1| GENE 68 50374 - 51762 1284 462 aa, chain + ## HITS:1 COG:SPy0013 KEGG:ns NR:ns ## COG: SPy0013 COG0037 # Protein_GI_number: 15674260 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Streptococcus pyogenes M1 GAS # 2 443 4 407 428 201 32.0 2e-51 MFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTLMEQVAEKEQLQLVIAHVNHQLRE ASAQEAQYLATYCQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMT AHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYPKEELYQFAQRQAFV YFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSE AVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQ PQGSVMLEQQWQLAKSYDWLCLEQKQVALREEVTHLLVPGAGIYLSETEWLGLIATDKPF PLPEEINQWAGQLLAIPLTTATPLTVRHRQSGDRITLKLGFTKKLSRVFIDQKVPNEARE SAWVITDEQEEIIWVPKFANSYLSIPLETDKIHYRLLFKTKE >gi|307679228|gb|GL457019.1| GENE 69 51781 - 52326 782 181 aa, chain + ## HITS:1 COG:lin0251_2 KEGG:ns NR:ns ## COG: lin0251_2 COG0634 # Protein_GI_number: 16799328 # Func_class: F Nucleotide transport and metabolism # Function: Hypoxanthine-guanine phosphoribosyltransferase # Organism: Listeria innocua # 2 178 1 177 179 256 74.0 1e-68 MIEKDIEKVLISKEEILAKSAELGKQLTEEYQGKNPLVVGILKGAVPFMADLTREINTYL ELDFMDVSSYGNATVSSGEVKIVKDLDTNVEGRHILIVEDIIDSGRTLAYLVDLFRYRKA ASVKIVTLLDKPEGRVVDIKADYVGFDVPNEFVVGYGLDYAETYRNLPYIGVLKPEVYES N >gi|307679228|gb|GL457019.1| GENE 70 52420 - 54576 1339 718 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 122 659 94 635 636 520 50 1e-147 MNKKNNGMKNGLYYVLVVLAMVMVVYFIFGNNNQQSPDIDYSTFQQQLEDGKVKDMTIQP TNGVYRIEGQYKEKQEVKDTGGLSLWGSTQASSKGFTTTVLPSDTTLAGIQDAAQNNKVK LVVKEQSTSGAWLSLLFSFLPLVIIFFFFYMMMSQQGGGGGGGGRVMNFGKSKAKEADKK ANRVRFSDVAGAEEEKQELVEVVEFLKDPRRFAELGARIPAGVLLEGPPGTGKTLLAKAV AGEAGVPFYSISGSDFVEMFVGVGASRVRDLFETAKKNAPAIIFIDEIDAVGRQRGAGMG GGHDEREQTLNQLLVEMDGFDGNEGVIVIAATNRSDVLDPALLRPGRFDRQILVGRPDVK GREAILRVHAKNKPLADDVDLKVVAQQTPGFAGADLENVLNEAALVAARRNKKKIDASDV DEAEDRVIAGPAKKDRVINKKEREMVAYHEAGHTIVGLVLSRARVVHKVTIIPRGRAGGY MIALPKEDQFLMTKEDMFEQIVGLLGGRTAEEIIFGVQSTGASNDFEQATGIARSMVTEY GMSDKLGPVQYEGNHQVFVGRDYGQTKAYSEQVAFEIDQEVRRILMDAHTKAHEIIEAHR EQHKLIAEKLLEYETLDAKAIKSLFETGKMPEGTDSDYPSEKEAQTFEEAKRALEEKEAQ KQVEEKQDFEEAKKELHDEAEEVKVESEQTEKEVQSEEKKDSDSNSEYDRNNYEDRYK >gi|307679228|gb|GL457019.1| GENE 71 54738 - 55634 1127 298 aa, chain + ## HITS:1 COG:BS_yacC KEGG:ns NR:ns ## COG: BS_yacC COG1281 # Protein_GI_number: 16077139 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Disulfide bond chaperones of the HSP33 family # Organism: Bacillus subtilis # 3 293 2 291 291 351 58.0 1e-96 MEDYLVKALCYKGSIRAYAISATETVSEAQRRHDTWSSSTAALGRTLIGALLLGATLKGD DKLTVKVQGNGPAGAIIVDSNGRGETKGYIKNPHVSLKLNATGKIDVRGAVGNEGIFTVI KDLGLKETFSGQTPIVSGEIGEDFTYFMAVSEQVPSAIGLGVLVDTDESVKAAGGFMIQV MPGADESTIDFIEQRLAEVPPISQLLENGETPEQVLYRLLGEDEVEILEKMPVQFKCDCS KEKFATALIAVGIDELNAMIDEDHGAEAVCQFCNNKYHYSEEELIELRDEAIRNTKQK >gi|307679228|gb|GL457019.1| GENE 72 55631 - 56644 554 337 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase [Haemophilus influenzae R2866] # 1 327 22 347 353 218 37 8e-56 VGGKTMWKIGDVEIPNRVVVAPMAGISNAAFRVTVKEFGAGLVVCEMISDKGIKLRNKKT LEMLYIDEREYPLSVQIFGGDKETLVEAAKFVEENTQAAIIDINMGCPVNKIIKAEAGAK WLLDPNKVHEMVHAVSSAVSLPVTVKMRTGWDEDHLYAVDNALAAEQAGASAIAMHGRTR VQMYEGTANWDVLKEVKKHLTIPFMGNGDVKTPEDAKRMLEYVGADGVMIGRAALGNPWM IQRTKEYLETGELMPEPSPAEKINIAKVHLQRLVDLKGEKIAVREFRQHASYYLKGISRA AKVKVAINQVETQQAVVDLLDAFVEKISKVAVTTIEE >gi|307679228|gb|GL457019.1| GENE 73 56738 - 58234 2017 498 aa, chain + ## HITS:1 COG:BS_lysS KEGG:ns NR:ns ## COG: BS_lysS COG1190 # Protein_GI_number: 16077150 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Lysyl-tRNA synthetase (class II) # Organism: Bacillus subtilis # 1 498 1 497 499 708 71.0 0 MAEEQQAHLEDLNDQMLVRREKMEALREEGIDPFGKRFDRTHNSAELHEQYDNHTKEELS EMNTEVSVAGRMMTKRGKGKAGFAHLQDREGQIQIYVRKDQVGDEAYELFKHADLGDFFG VTGQIMKTNTGEVTVKAQTITLLTKALRPLPDKYHGLTNVEQRYRQRYLDLISNKESFDR FMKRSQIISEIRRYLDGNGYVEVETPVLHNEAGGAAARPFITHHNALDMDLYLRIALELH LKRLIVGGMEKVYEIGRVFRNEGIDTTHNPEFTMLEAYTAYTDYQDVMDLTEGIIRNAAE KVLGTTDITYDGQAVDLGSPFKRLHMADAVKEQTGVDFWQEMTIEEARALAKEHNVEITD AMTVGHIINEFFETFVEDTLQQPTFIYGHPVAVSPLAKKNPEDGRFTDRFELFIIGKEFA NAFTELNDPIDQRERFEEQEKEREQGNDEAHGVDEDFIEALEYGLPPTGGLGIGIDRLVM LLTDAQSIRDVLLFPTMR Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:36:28 2011 Seq name: gi|307679227|gb|GL457020.1| Enterococcus faecalis TX2141 genomic scaffold Scfld83, whole genome shotgun sequence Length of sequence - 137713 bp Number of predicted genes - 129, with homology - 127 Number of transcription units - 70, operones - 35 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 64 - 810 577 ## COG1737 Transcriptional regulators - Prom 864 - 923 11.7 + Prom 871 - 930 6.4 2 2 Op 1 19/0.000 + CDS 989 - 1915 999 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 3 2 Op 2 7/0.000 + CDS 1920 - 3338 1781 ## COG1299 Phosphotransferase system, fructose-specific IIC component 4 2 Op 3 . + CDS 3365 - 3826 617 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 5 2 Op 4 . + CDS 3823 - 4800 1097 ## COG3684 Tagatose-1,6-bisphosphate aldolase + Prom 4864 - 4923 5.0 6 2 Op 5 . + CDS 4989 - 5522 409 ## COG3557 Uncharacterized domain/protein associated with RNAses G and E + Term 5546 - 5599 20.3 - Term 5533 - 5585 20.1 7 3 Tu 1 . - CDS 5609 - 6040 516 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 6070 - 6129 6.3 + Prom 6092 - 6151 6.5 8 4 Op 1 1/0.250 + CDS 6185 - 7330 1382 ## COG0628 Predicted permease + Prom 7426 - 7485 3.9 9 4 Op 2 . + CDS 7505 - 8884 1674 ## COG1253 Hemolysins and related proteins containing CBS domains + Term 8891 - 8938 9.1 + Prom 8960 - 9019 6.3 10 5 Tu 1 . + CDS 9058 - 10632 2050 ## COG4108 Peptide chain release factor RF-3 + Term 10675 - 10729 16.1 + Prom 10714 - 10773 4.8 11 6 Op 1 . + CDS 10806 - 11249 482 ## EF0702 hypothetical protein 12 6 Op 2 . + CDS 11265 - 11912 684 ## COG2323 Predicted membrane protein 13 6 Op 3 . + CDS 11979 - 13049 1008 ## EF0704 putative lipoprotein + Term 13051 - 13107 8.1 - Term 13046 - 13085 5.1 14 7 Tu 1 . - CDS 13092 - 13406 432 ## EF0705 hypothetical protein - Prom 13510 - 13569 11.1 - Term 13550 - 13593 10.0 15 8 Op 1 . - CDS 13601 - 15841 1678 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 - Prom 15873 - 15932 2.8 16 8 Op 2 . - CDS 15967 - 16143 118 ## EF0707 hypothetical protein + Prom 15956 - 16015 6.2 17 9 Tu 1 . + CDS 16143 - 16334 409 ## EF0708 hypothetical protein + Prom 16418 - 16477 5.7 18 10 Op 1 25/0.000 + CDS 16505 - 16771 418 ## COG1925 Phosphotransferase system, HPr-related proteins 19 10 Op 2 . + CDS 16771 - 18498 2281 ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) + Term 18511 - 18554 11.0 - Term 18503 - 18538 6.7 20 11 Tu 1 . - CDS 18543 - 19577 1148 ## EF0711 hypothetical protein - Prom 19597 - 19656 3.0 - Term 19601 - 19643 9.7 21 12 Op 1 . - CDS 19658 - 20395 829 ## EF0713 hypothetical protein 22 12 Op 2 . - CDS 20450 - 22735 1502 ## EF0714 hypothetical protein - Prom 22760 - 22819 6.2 23 13 Tu 1 . + CDS 23089 - 24372 2049 ## COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) + Term 24414 - 24456 9.2 + Prom 24405 - 24464 5.3 24 14 Tu 1 . + CDS 24484 - 25146 633 ## EF0716 hypothetical protein 25 15 Op 1 19/0.000 - CDS 25201 - 27123 2559 ## COG1299 Phosphotransferase system, fructose-specific IIC component 26 15 Op 2 10/0.000 - CDS 27147 - 28064 996 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 27 15 Op 3 . - CDS 28061 - 28813 754 ## COG1349 Transcriptional regulators of sugar metabolism - Prom 28886 - 28945 8.0 - Term 28904 - 28947 12.6 28 16 Tu 1 . - CDS 28949 - 30508 1569 ## COG0038 Chloride channel protein EriC - Prom 30585 - 30644 7.2 + Prom 30586 - 30645 6.3 29 17 Op 1 5/0.000 + CDS 30673 - 32931 2790 ## COG0210 Superfamily I DNA and RNA helicases + Prom 32966 - 33025 7.7 30 17 Op 2 . + CDS 33057 - 35087 2311 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) + Prom 35089 - 35148 6.8 31 18 Tu 1 . + CDS 35241 - 35351 164 ## + Term 35438 - 35476 5.0 + Prom 35491 - 35550 5.0 32 19 Op 1 31/0.000 + CDS 35669 - 35974 472 ## COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit 33 19 Op 2 21/0.000 + CDS 35974 - 37443 399 ## PROTEIN SUPPORTED gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 34 19 Op 3 2/0.083 + CDS 37443 - 38873 1787 ## COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) 35 19 Op 4 2/0.083 + CDS 38892 - 39980 1310 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase + Term 39990 - 40049 13.9 + Prom 40012 - 40071 6.1 36 20 Op 1 . + CDS 40180 - 41553 1606 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 37 20 Op 2 . + CDS 41554 - 41682 219 ## PROTEIN SUPPORTED gi|227517695|ref|ZP_03947744.1| 30S ribosomal protein S9 + Term 41700 - 41742 6.4 + Prom 41723 - 41782 5.0 38 21 Tu 1 . + CDS 41822 - 42139 434 ## EF0730 hypothetical protein + Term 42140 - 42194 4.1 - Term 42133 - 42174 1.1 39 22 Tu 1 . - CDS 42182 - 43147 646 ## COG2771 DNA-binding HTH domain-containing proteins - Prom 43179 - 43238 6.6 + Prom 43128 - 43187 11.8 40 23 Op 1 3/0.000 + CDS 43426 - 44445 1259 ## COG0078 Ornithine carbamoyltransferase + Term 44454 - 44498 7.6 41 23 Op 2 . + CDS 44512 - 45888 1458 ## COG0531 Amino acid transporters 42 23 Op 3 1/0.250 + CDS 45881 - 46978 1107 ## COG2957 Peptidylarginine deiminase and related enzymes 43 23 Op 4 . + CDS 46990 - 47919 1089 ## COG0549 Carbamate kinase + Term 47984 - 48042 18.1 + Prom 48035 - 48094 6.5 44 24 Tu 1 . + CDS 48116 - 49702 1881 ## COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases + Term 49749 - 49802 14.2 + Prom 50099 - 50158 6.1 45 25 Op 1 . + CDS 50257 - 50955 563 ## COG3201 Nicotinamide mononucleotide transporter 46 25 Op 2 . + CDS 50964 - 51608 898 ## COG1428 Deoxynucleoside kinases + Term 51616 - 51649 4.0 + Prom 51840 - 51899 7.0 47 26 Op 1 . + CDS 51958 - 52389 172 ## EF0741 hypothetical protein + Prom 52410 - 52469 5.4 48 26 Op 2 . + CDS 52502 - 52888 617 ## COG4835 Uncharacterized protein conserved in bacteria + Term 52892 - 52949 21.1 - Term 52885 - 52931 15.2 49 27 Tu 1 . - CDS 52935 - 53270 461 ## EF0743 hypothetical protein - Prom 53299 - 53358 8.7 + Prom 53289 - 53348 3.8 50 28 Op 1 . + CDS 53568 - 54959 1985 ## COG1823 Predicted Na+/dicarboxylate symporter + Term 54965 - 55024 9.0 + Prom 55005 - 55064 5.9 51 28 Op 2 . + CDS 55092 - 55472 561 ## COG0346 Lactoylglutathione lyase and related lyases + Term 55477 - 55530 19.5 + Prom 55507 - 55566 7.1 52 29 Op 1 . + CDS 55625 - 56791 1031 ## COG1680 Beta-lactamase class C and other penicillin binding proteins + Prom 56805 - 56864 4.6 53 29 Op 2 . + CDS 56890 - 57600 748 ## COG4420 Predicted membrane protein + Term 57808 - 57862 1.1 + Prom 57841 - 57900 10.3 54 30 Tu 1 . + CDS 57962 - 58912 1353 ## COG1054 Predicted sulfurtransferase + Term 58927 - 58986 17.1 + Prom 58923 - 58982 8.3 55 31 Op 1 . + CDS 59136 - 59474 260 ## EF0750 cell wall surface anchor family protein 56 31 Op 2 . + CDS 59474 - 60205 898 ## EF0751 hypothetical protein 57 31 Op 3 . + CDS 60222 - 61001 900 ## EF0752 hypothetical protein 58 31 Op 4 . + CDS 61021 - 63120 1982 ## EF0753 hypothetical protein 59 31 Op 5 . + CDS 63143 - 63883 974 ## EF0754 hypothetical protein 60 31 Op 6 . + CDS 63959 - 65053 1033 ## EF0755 hypothetical protein + Prom 65154 - 65213 8.9 61 32 Op 1 . + CDS 65255 - 65704 286 ## EF0756 hypothetical protein 62 32 Op 2 . + CDS 65708 - 67156 909 ## EF0757 hypothetical protein + Prom 67161 - 67220 6.0 63 33 Op 1 . + CDS 67266 - 69170 2113 ## COG2217 Cation transport ATPase 64 33 Op 2 . + CDS 69206 - 69925 684 ## COG1285 Uncharacterized membrane protein + Term 69938 - 69978 8.6 - Term 69926 - 69966 8.6 65 34 Op 1 16/0.000 - CDS 69973 - 70710 296 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 66 34 Op 2 . - CDS 70712 - 72880 2679 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - Prom 72904 - 72963 5.3 + Prom 72948 - 73007 7.4 67 35 Op 1 7/0.000 + CDS 73159 - 75156 2277 ## COG0556 Helicase subunit of the DNA excision repair complex + Term 75168 - 75223 17.1 + Prom 75175 - 75234 2.0 68 35 Op 2 . + CDS 75274 - 78093 3082 ## COG0178 Excinuclease ATPase subunit + Term 78113 - 78155 8.0 + Prom 78167 - 78226 8.8 69 36 Tu 1 . + CDS 78265 - 79059 877 ## EF0764 hypothetical protein + Term 79094 - 79131 6.4 + Prom 79142 - 79201 6.1 70 37 Op 1 12/0.000 + CDS 79225 - 80112 990 ## COG1660 Predicted P-loop-containing kinase 71 37 Op 2 12/0.000 + CDS 80112 - 81107 949 ## COG0391 Uncharacterized conserved protein 72 37 Op 3 . + CDS 81141 - 82076 1109 ## COG1481 Uncharacterized protein conserved in bacteria + Term 82090 - 82146 7.6 + Prom 82101 - 82160 4.3 73 38 Tu 1 . + CDS 82310 - 83233 1100 ## EF0769 hypothetical protein + Term 83243 - 83296 12.2 + Prom 83256 - 83315 9.6 74 39 Tu 1 . + CDS 83347 - 83865 627 ## COG1651 Protein-disulfide isomerase + Term 83871 - 83909 9.5 - Term 83851 - 83906 19.1 75 40 Tu 1 . - CDS 83910 - 84503 842 ## COG0740 Protease subunit of ATP-dependent Clp proteases - Prom 84533 - 84592 6.7 + Prom 84611 - 84670 6.0 76 41 Tu 1 . + CDS 84699 - 85217 533 ## EF0773 hypothetical protein + Term 85222 - 85273 7.0 77 42 Tu 1 . - CDS 85237 - 85641 501 ## EF0774 hypothetical protein - Prom 85668 - 85727 6.2 78 43 Op 1 . + CDS 86106 - 88079 2314 ## EF0775 anchor protein, putative 79 43 Op 2 . + CDS 88104 - 88487 404 ## EF0776 hypothetical protein + Term 88500 - 88552 17.0 + Prom 88559 - 88618 8.2 80 44 Op 1 . + CDS 88661 - 89170 509 ## EF0778 hypothetical protein 81 44 Op 2 . + CDS 89200 - 90987 1661 ## COG0584 Glycerophosphoryl diester phosphodiesterase 82 44 Op 3 . + CDS 91013 - 91420 359 ## EF0780 MutT/NUDIX family protein + Prom 91521 - 91580 5.6 83 45 Tu 1 . + CDS 91654 - 91854 366 ## COG1278 Cold shock proteins + Term 91863 - 91903 7.5 - TRNA 92510 - 92581 57.5 # Arg CCG 0 0 84 46 Tu 1 . + CDS 92640 - 93971 1523 ## COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog + Term 93973 - 94025 15.1 + Prom 94093 - 94152 3.9 85 47 Tu 1 . + CDS 94172 - 96049 1743 ## COG1835 Predicted acyltransferases + Term 96053 - 96101 9.1 + Prom 96118 - 96177 8.2 86 48 Tu 1 4/0.000 + CDS 96265 - 97449 1864 ## COG0192 S-adenosylmethionine synthetase + Term 97455 - 97522 17.6 + Prom 97491 - 97550 11.7 87 49 Op 1 . + CDS 97620 - 99086 1566 ## COG0477 Permeases of the major facilitator superfamily 88 49 Op 2 . + CDS 99125 - 99916 901 ## COG0627 Predicted esterase + Term 99952 - 100002 15.2 89 50 Tu 1 . - CDS 99997 - 100659 743 ## EF0787 TetR family transcriptional regulator - Prom 100790 - 100849 8.8 + Prom 100807 - 100866 3.4 90 51 Op 1 35/0.000 + CDS 100913 - 102628 197 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 91 51 Op 2 . + CDS 102628 - 104397 169 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 + Term 104401 - 104453 8.4 + Prom 104728 - 104787 8.6 92 52 Tu 1 . + CDS 104807 - 105412 636 ## COG1309 Transcriptional regulator + Term 105463 - 105526 19.0 + Prom 105465 - 105524 7.6 93 53 Op 1 36/0.000 + CDS 105551 - 106630 1272 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 94 53 Op 2 . + CDS 106635 - 107303 256 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) + Term 107318 - 107372 13.2 - Term 107306 - 107360 17.0 95 54 Op 1 6/0.000 - CDS 107361 - 107924 643 ## COG0500 SAM-dependent methyltransferases 96 54 Op 2 1/0.250 - CDS 107924 - 108892 976 ## COG1242 Predicted Fe-S oxidoreductase 97 54 Op 3 . - CDS 108908 - 109558 612 ## COG0671 Membrane-associated phospholipid phosphatase - Prom 109588 - 109647 8.2 - Term 109657 - 109707 16.1 98 55 Op 1 . - CDS 109727 - 110752 1029 ## EF0797 hypothetical protein 99 55 Op 2 . - CDS 110752 - 111411 615 ## EF0798 hypothetical protein - Prom 111655 - 111714 6.7 + Prom 111605 - 111664 8.4 100 56 Op 1 . + CDS 111727 - 112956 1283 ## COG1705 Muramidase (flagellum-specific) 101 56 Op 2 . + CDS 112971 - 113870 883 ## COG1388 FOG: LysM repeat + Term 114075 - 114121 4.0 + Prom 114165 - 114224 5.8 102 57 Tu 1 . + CDS 114274 - 116688 3135 ## COG0495 Leucyl-tRNA synthetase + Term 116704 - 116761 11.3 - Term 116701 - 116740 3.6 103 58 Op 1 . - CDS 116744 - 116968 248 ## EF0802 hypothetical protein - Prom 116999 - 117058 3.7 104 58 Op 2 . - CDS 117065 - 117508 444 ## EF0803 hypothetical protein - Prom 117602 - 117661 7.8 - Term 117628 - 117675 10.5 105 59 Op 1 16/0.000 - CDS 117684 - 118514 860 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 106 59 Op 2 34/0.000 - CDS 118528 - 119163 388 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 107 59 Op 3 . - CDS 119176 - 119817 713 ## COG0765 ABC-type amino acid transport system, permease component + Prom 120493 - 120552 4.3 108 60 Tu 1 . + CDS 120652 - 122283 1792 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Prom 122285 - 122344 5.3 109 61 Tu 1 . + CDS 122390 - 122638 338 ## COG2261 Predicted membrane protein + Term 122650 - 122701 8.6 - Term 122643 - 122683 4.1 110 62 Tu 1 . - CDS 122704 - 123027 463 ## EF0819 hypothetical protein - Prom 123065 - 123124 8.0 - Term 123190 - 123240 17.8 111 63 Tu 1 . - CDS 123279 - 123887 1004 ## PROTEIN SUPPORTED gi|29375409|ref|NP_814563.1| 50S ribosomal protein L25/general stress protein Ctc - Prom 124113 - 124172 5.2 112 64 Op 1 . + CDS 124218 - 125000 675 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 113 64 Op 2 . + CDS 124997 - 125677 589 ## COG1011 Predicted hydrolase (HAD superfamily) + Term 125682 - 125719 6.6 - Term 125670 - 125707 6.6 114 65 Tu 1 . - CDS 125712 - 126167 496 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 126285 - 126344 6.5 115 66 Op 1 . + CDS 126250 - 126345 85 ## 116 66 Op 2 . + CDS 126342 - 126971 831 ## COG0572 Uridine kinase + Term 126978 - 127030 7.3 + Prom 127055 - 127114 6.7 117 67 Tu 1 . + CDS 127140 - 127481 337 ## COG2337 Growth inhibitor + Term 127494 - 127530 4.3 + Prom 127504 - 127563 2.5 118 68 Tu 1 . + CDS 127583 - 128548 1033 ## COG0673 Predicted dehydrogenases and related proteins + Term 128712 - 128755 4.4 + Prom 128784 - 128843 3.7 119 69 Op 1 . + CDS 128918 - 130837 1604 ## COG3711 Transcriptional antiterminator 120 69 Op 2 . + CDS 130803 - 131126 542 ## EF0829 hypothetical protein 121 69 Op 3 . + CDS 131141 - 131497 587 ## EF0830 hypothetical protein 122 69 Op 4 . + CDS 131528 - 131884 422 ## EF0831 hypothetical protein 123 69 Op 5 . + CDS 131900 - 132679 1073 ## EF0832 hypothetical protein 124 69 Op 6 . + CDS 132699 - 133394 1107 ## EF0833 hypothetical protein + Prom 133423 - 133482 10.2 125 70 Op 1 . + CDS 133525 - 134838 1416 ## COG1455 Phosphotransferase system cellobiose-specific component IIC + Term 134848 - 134890 5.0 126 70 Op 2 . + CDS 134915 - 135163 146 ## EF0835 hypothetical protein 127 70 Op 3 . + CDS 135172 - 136260 1293 ## COG3589 Uncharacterized conserved protein 128 70 Op 4 1/0.250 + CDS 136269 - 137378 1277 ## COG3964 Predicted amidohydrolase 129 70 Op 5 . + CDS 137368 - 137713 341 ## COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase] Predicted protein(s) >gi|307679227|gb|GL457020.1| GENE 1 64 - 810 577 248 aa, chain - ## HITS:1 COG:L47971 KEGG:ns NR:ns ## COG: L47971 COG1737 # Protein_GI_number: 15673967 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 5 246 4 241 244 139 36.0 4e-33 MEQKLSESEQYLWHFIETHILEIPDYSIVKLSERANVSTATIVRTMKKKGYEGFTSFKHH LKDKENQNINFSALEKVDRGIRTAILKNEEEVTRTINMIEIGNIEDAIQKIKASRRIIIF ARGFSELIAQEMMVKFQLAGKYCELHTDPEIIKNISKKLSKKDVALFVSLNGETQELVVA GKNCYDSEIGTILLTASKHSSLMKYIEIPFVGFKSEGSFFPDYEVRSRLPLSILARILLD AYALRTTT >gi|307679227|gb|GL457020.1| GENE 2 989 - 1915 999 308 aa, chain + ## HITS:1 COG:BH0827 KEGG:ns NR:ns ## COG: BH0827 COG1105 # Protein_GI_number: 15613390 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Bacillus halodurans # 3 303 2 299 306 216 40.0 5e-56 MTIYTCTLNLAIDLFIETEELVPFVVNRTKEDDIQANGKGVNVSLILKMLGIDNTALGVK AGFTGNYVEDYLKEKEITTDFIEVAGTTRINVFTKVTQDQKEYKLVNKGPKLSEEHVQRF LKKISELRKGDYLCVSGSLPQGVSPSILIEISRICFEKQVFLILDSSYEEILDCLPYQPF LLKPNEEELQEWFHTEVQTKDDYIFYGQELLKRGAKNILLSLGSEGALFMNNEKVLSGNS PTGMVVNTACSGDAMLGTFLAGWHQGLSLEKNLKRSIAAGSSTAFRKGLTDFSDVQELEQ QIKIQEEE >gi|307679227|gb|GL457020.1| GENE 3 1920 - 3338 1781 472 aa, chain + ## HITS:1 COG:STM3255_2 KEGG:ns NR:ns ## COG: STM3255_2 COG1299 # Protein_GI_number: 16766553 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Salmonella typhimurium LT2 # 132 456 1 324 350 396 63.0 1e-110 MATYQLIAATGCPTGIAHTYMAQEALEQAAKRKGITIKVETHGQIGIENELTPAEIQGAE AVIIAADKDVQAERFAGKRIIDVPVSVGIKEADRLIEEALAGKGSIAAENQAVDELEQET QISSGNVGHSIYKNLMNGVSHMLPFVVAGGVLIALSFAIWGIYSFDPESSQYNATAAMLK SIGDASMGMMVPILSAYIAEGIAKRPGLVVGFVGGLIANTGGTGFLGGILSGFLAGYFIL LLQRVFKGLPKSLDGLKAIFLYPVIGVAVIGITMSLLADPMKAVNEGMMSFLASFQNSSP LVLGIIVGCMCAFDMGGPVNKAAYVTGTALLAQGNTSFMAGVSAACIAPPLITGFATLFF GKYFDTNERNAGLVNFILGSTHITEGAIPFAAKDPLKVLPIMMLGSSIAAVLTYMFGVQV PAPHGGFLVLPVVTHAVQWVLAILAGSLVGGLLLGFVQKSRIAKQEQSLSKK >gi|307679227|gb|GL457020.1| GENE 4 3365 - 3826 617 153 aa, chain + ## HITS:1 COG:hrsA_1 KEGG:ns NR:ns ## COG: hrsA_1 COG1762 # Protein_GI_number: 16128706 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Escherichia coli K12 # 11 149 34 173 183 84 29.0 1e-16 MAFIKENHIFLNQQLQTQEDVFHFLAKKSTELEVAQDAQEVFDKLNEREQEGTTGMMNGF AIPHAKAATIQQAAIIIVTLDQGVEWQSLDNQLTEFVIALFIPDAEAGTTHLKLLSSVAR LLLREEVTSGLKQASSPAEIATLLNNQLGEGTE >gi|307679227|gb|GL457020.1| GENE 5 3823 - 4800 1097 325 aa, chain + ## HITS:1 COG:SA1994 KEGG:ns NR:ns ## COG: SA1994 COG3684 # Protein_GI_number: 15927772 # Func_class: G Carbohydrate transport and metabolism # Function: Tagatose-1,6-bisphosphate aldolase # Organism: Staphylococcus aureus N315 # 5 319 4 321 326 370 61.0 1e-102 MKKISEQKRKHLENLVDDQGIIGALAIDQRGALKRMMGKYKEVTAQEISDFKVLVSRCLT PETSAILLDPEYGLAAAENRAQTSGLLLAYEKTGYDASTPGRLPDSLDVWSIKRLKEAGA DACKFLLYYDVDESEAINERKKAYIERIGSECLAEEIPFFLEIVSYDANNSDSASKEYAK VKPHKVIEAMKEFSKDRYNVDVLKVEVPVNMNFVEGFGTESLYSQDEAQAFFNMQSEATQ LPFIFLSAGVSAAMFQETLKFAKKAGSSFNGVLCGRATWADGVLPFVQQGSEAAVAWLET TGKTNVEELNQVLRESAVSVFEKIQ >gi|307679227|gb|GL457020.1| GENE 6 4989 - 5522 409 177 aa, chain + ## HITS:1 COG:L196206 KEGG:ns NR:ns ## COG: L196206 COG3557 # Protein_GI_number: 15672951 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Uncharacterized domain/protein associated with RNAses G and E # Organism: Lactococcus lactis # 1 176 1 176 176 289 82.0 2e-78 MGIPKEGEFVTIQSYKHDGHLHRTWRDTMVLKTSEYSLIGVNDHTLVTESDGRRWVTREP AIVYFHKKYWFNIIAMIREKGVSYYCNLASPYVLDDEALKYIDYDLDIKVFPDGEKRLLD VDEYEFHSKLMDYPEDIDFILKENVKTLVDWINNEKGPFSPEYVDIWYQRYQQLSKK >gi|307679227|gb|GL457020.1| GENE 7 5609 - 6040 516 143 aa, chain - ## HITS:1 COG:SA0906 KEGG:ns NR:ns ## COG: SA0906 COG0454 # Protein_GI_number: 15926640 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Staphylococcus aureus N315 # 16 143 13 140 144 121 46.0 4e-28 MHVAQTKDTMSDLYLDAVRLRQRVFVAEQGVPEEMEIDEYEARCIHFVLYTDHVAVATCR LLPLENGVMKLQRMAVEKAYRGADYGRVIMEAAENFAKEQGYHKITLGAQVTAVGFYERL GYQKTGAPFMDAGIEHYEMNKEL >gi|307679227|gb|GL457020.1| GENE 8 6185 - 7330 1382 381 aa, chain + ## HITS:1 COG:lin0908 KEGG:ns NR:ns ## COG: lin0908 COG0628 # Protein_GI_number: 16799980 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Listeria innocua # 3 362 4 363 378 306 47.0 4e-83 MINRFKESKLFFWSVELLVVAMLLFIASKINFLFAPIGTFFSTLFAPVLVAGFLYYLLNP VVNLLMKTKMKRIYAVLLVFLLLIIALVLILLTIIPKLADQLASLASSMPDFFKQVETWI YEIAELPIFKQIDLTSYIEKMDISYANIIQQFLSSLSSSLGSIVSTVASTTIVLVTAPFI LFYMLKDGDKLVPAIQRFLPEKRKDDIVDLLGQLNQTLSSYISGQAIECLFVGTFTIIGY SLLGVRYAFLFGVIAGFTNLIPYLGPYLGLAPAVLVTIFNEPVKAALCCLVVLVVQQLDG NIIYPNVIGKSLKIHPLTIILILLVAGNLAGLLGIFLGVPFYAICRTIIYYVIDMVKAGR SEKVTNAVLLGNETNTKENNG >gi|307679227|gb|GL457020.1| GENE 9 7505 - 8884 1674 459 aa, chain + ## HITS:1 COG:L64811 KEGG:ns NR:ns ## COG: L64811 COG1253 # Protein_GI_number: 15673796 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Lactococcus lactis # 1 443 1 442 449 465 57.0 1e-131 MNNADPESQSLIAQLLLLVVLTFINAFLAAAEIAVVSVNKNRVEQKAEDGDAKAQKLLKV LQDPNNFLSTIQVGITLVNILSGASLAETLSSRLAPVLGGGAAAKSLASIIILALLTYVS IVFGELYPKRIAMNKSEEVAQLTSGAVRFLGVIARPFVWLLSASTDLLSKITPMTFDDAD SKMTRDEMRYMLETEGVLENEELEMLQGVFSLDTKVAREVMVPRTDAFMVDIQDDVQENI NLILGENYSRIPVYSEDKDKIVGILHTKTLLKAARNLGFENIELGAIIQEPLFVPETIFI DDLLYELKRTQNQMAILLDEYGGVVGLATLEDLLEEIVGEIDDETDEVENLYTQVADNEY LVQGRMLIDEFNEVFETDLHMSDVDTMAGYLITALGTIPDEGEKPSFEVGNIKLTAEEME GTRLLVLRVHFYDEETVDEEPEENRRFFRKEMEDDEPRR >gi|307679227|gb|GL457020.1| GENE 10 9058 - 10632 2050 524 aa, chain + ## HITS:1 COG:SP0439 KEGG:ns NR:ns ## COG: SP0439 COG4108 # Protein_GI_number: 15900357 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptide chain release factor RF-3 # Organism: Streptococcus pneumoniae TIGR4 # 3 524 1 514 514 798 76.0 0 MTINQKEAVDSRRTFAIISHPDAGKTTITEQLLLFGGAIRQAGTVKGKKTGNFAKSDWME IEKQRGISVTSSVMQFDYQDKRINILDTPGHEDFSEDTYRTLMAVDSAVMVIDSAKGIEA QTKKLFQVVKKRGIPIFTFINKLDRDGREPLELLEELEELLDIESYPMNWPIGMGKGLEG LYDIYNERVELYRPENNGGERFIPLKDGDIPSDLPLHNNSVYQQVLEDVELLVEAGDEFS EEKIARGDQTPVFFGSALTNFGVQTFLETFLQFAPAPHAHKTEEGGEVSPYEKEFSGFVF KIQANMNPAHRDRIAFVRICSGVFERGMDVTLGRTGKKVKLSNVTQFMADARENVTEAVA GDIIGVYDTGNYQIGDTLYEGKMNVQYEELPSFTPELFMKVTAKNVMKQKSFHKGIYQLV QEGAIQLYKTYLTEEYIIGAVGQLQFEVFQYRMSNEYNAEVVMTPMGSKIARWINPEDLD ERMSSSRNILARDRFDQPLFLFENQFAERWFADKYPDVELKSLM >gi|307679227|gb|GL457020.1| GENE 11 10806 - 11249 482 147 aa, chain + ## HITS:1 COG:no KEGG:EF0702 NR:ns ## KEGG: EF0702 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 147 1 147 147 232 100.0 4e-60 MNFYGIEYLKSQSNLNDYLKYFFIFALLIGLVIVFSFYVRHQIQTKYRELSIIIFLSLLF VLGVQYSNYQLNQNQHSQSSQMVHFVEQVAQEKKVSPEKVYVNGTQLADGTIVKIDEVFY KMSLSTDQQSYTLQETYLLTPTIEIIK >gi|307679227|gb|GL457020.1| GENE 12 11265 - 11912 684 215 aa, chain + ## HITS:1 COG:L163025 KEGG:ns NR:ns ## COG: L163025 COG2323 # Protein_GI_number: 15674091 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 1 209 1 209 211 319 80.0 2e-87 MQFYSPIIIKFALGIICLIVQINLMGKGNLAPTSAMDQVQNYVLGGIIGGVIYNDSITVL QFVLVLILWTLLVLILKFAKEHNRYVKQIVDGKPITLIKDGQVVVKECLKNGISANDLMF KLRANGIYEVQLVKRAVLEQNGQLTIVEYGDESIRYPIIVDGQANMDVLELIKKDEHWLL TQIQEQGFQRLQEIYLGEYLSGQLSLSPYEEKTIS >gi|307679227|gb|GL457020.1| GENE 13 11979 - 13049 1008 356 aa, chain + ## HITS:1 COG:no KEGG:EF0704 NR:ns ## KEGG: EF0704 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 356 1 356 356 613 98.0 1e-174 MKTKKIVVGLFCSMIILMGCQPDQRTEKMKESTESEAVQVTSGASAATNATSVKQEEQTN TNDQPKESAAKVSYERNGHTFEVDAVSGATVEANNGQSGISPEEKAQKMYWSGRPEIGEV QGDYYHHEVVFDGGYTALIDVVVKDQQIQLVEFDERGPKNYYSEEWAGVTKRLSGYANFQ ANNARTDQSLVTVVNTMTFLENQMVAENRLDGAFQTAKGQSNSANNGYLPAARALAKEIK EPSKEHYTSLTEDFGKGISGRLTVITLKDSGKITDLRYDEYFADTEEEIKDAKLKAYSRQ SKYFSKDYAQKSGENFKKEVDDLRKKAIEENKLVSPTNEEAWSENYQRLVKKITSQ >gi|307679227|gb|GL457020.1| GENE 14 13092 - 13406 432 104 aa, chain - ## HITS:1 COG:no KEGG:EF0705 NR:ns ## KEGG: EF0705 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 104 1 104 104 170 100.0 1e-41 MKLVNVTNSYKQLVNKQLENTDAYFVKVYSAGNTTAVYSEAAHHVEVLIMNKNRRIRPTE VKEILAKLLKRLPKEAYDPDEISIIELNHVTEVSVPLKVSLMEN >gi|307679227|gb|GL457020.1| GENE 15 13601 - 15841 1678 746 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 57 708 124 788 815 650 52 0.0 MICQNCQQNEATIHLYANVNGQRKQLDYCQSCYQKLKNQANNSPQNMGQDPFGFGSLDDL YRSLSRQMQQGNPYEQQTPPTQFGDGGNGGQPPRGGAGAGQGLLGEYGINITEAARQGDI DPVVGRDQEIKRVIEILNRRTKNNPVLIGEPGVGKTAVVEGLAQKIVDGDVPQKLLDKEV IRLDVVSLVQGTGIRGQFEERMQKLIEEITEAENVILFIDEVHEIVGAGAAGDGNMDAGN ILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVQVDEPTVAETITILHGLQKRYE DYHHVKYTDEAINAAANLSNRYIQDRFLPDKAIDLLDESGSKMNLTIQLVDPKTIDKKLA EAEQQKQQASAEEDFEKAAYYRDQINKLQAMKEKQISDEETPVITEKDIEAIVEQKTGIP VGDLKEKEQTQLKNLAVDLKAHVVGQDDAVDKVAKAIRRNRVGLGKQNRPIGSFLFVGPT GVGKTELAKQLAFELFGSEDSMVRFDMSEYMEKHSVSKLIGSPPGYVGYDEAGQLTEKVR RNPYSLILLDEIEKAHPDVLHMFLQILDDGRLTDAQGRTVSFKDTIIIMTSNAGTGAVEA NVGFGAAREGVTKSVLGQLNNFFTPEFLNRFDGIIEFKALSKENLMNIVSLMLEEVNGLL AKQKLHIEVPTEVKEKLVDLGYDPAMGARPLRRTIQEQIEDGIAEYYLDHPENHQLVAAL DNEGKIIVTGAQEVTKTETSTSDQAE >gi|307679227|gb|GL457020.1| GENE 16 15967 - 16143 118 58 aa, chain - ## HITS:1 COG:no KEGG:EF0707 NR:ns ## KEGG: EF0707 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 58 1 58 58 89 96.0 4e-17 MISPLFLLNINSYSLLENGAIVCKKIESLPFFKQGLLLDSLTKNAIITSKVKNGQVIL >gi|307679227|gb|GL457020.1| GENE 17 16143 - 16334 409 63 aa, chain + ## HITS:1 COG:no KEGG:EF0708 NR:ns ## KEGG: EF0708 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 63 1 63 63 108 100.0 8e-23 MAENPFVEKIASLKAGEISELIVEQNEFFQFRDAWISLPDRAEIVGEAGLNGRIIYRYQK EEE >gi|307679227|gb|GL457020.1| GENE 18 16505 - 16771 418 88 aa, chain + ## HITS:1 COG:L120335 KEGG:ns NR:ns ## COG: L120335 COG1925 # Protein_GI_number: 15672099 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, HPr-related proteins # Organism: Lactococcus lactis # 1 88 1 88 88 115 76.0 3e-26 MEKKEFHIVAETGIHARPATLLVQTASKFNSDINLEYKGKSVNLKSIMGVMSLGVGQGSD VTITVDGADEAEGMAAIVETLQKEGLAE >gi|307679227|gb|GL457020.1| GENE 19 16771 - 18498 2281 575 aa, chain + ## HITS:1 COG:SP1176 KEGG:ns NR:ns ## COG: SP1176 COG1080 # Protein_GI_number: 15901041 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Streptococcus pneumoniae TIGR4 # 1 573 1 573 577 861 78.0 0 MSEMLKGIAASDGVAVAKAYLLVQPDLSFNKTSVEDTDAEATRLDDALAKSTEELQAIRD KAAQSLGEAEAQVFDAHLMVLSDPEMVGQIKQNIQDNKVNAEAALKEVTDMYIGMFEAMD DNAYMQERAADIRDVAKRILAHLLGVTLPNPSMINEEVIVVAHDLTPSDTAQLDRTYVKA FVTDIGGRTSHSAIMARSLEIPAIVGTKEITDKVKAGDILAVNGIIGDVIIDPTDAEKSE FEAEAKAYADQKAEWDKLKNAETVTADGKHVELAANIGTPKDLEGVHKNGGEAVGLYRTE FLYMDSSDFPTEEDQYQAYKAVLEGMEGKPVVVRTMDIGGDKELPYLTLPHEMNPFLGYR ALRISLSELGDGMFRTQMRALLRASVHGNLRIMFPMVATLKEFRAAKAIFEDEKQKLVNE GVEVSNDIQVGIMIEIPAAAVLADKFAKEVDFFSVGTNDLIQYTMAADRMNERVSYLYQP YNPSILRLIKNVIDAAHAEGKWAGMCGEMAGDQTAVPLLLGMGLDEFSMSATSILKTRSL MKRLDTTKMAELADRALKECDTMEEVVALVEEYTK >gi|307679227|gb|GL457020.1| GENE 20 18543 - 19577 1148 344 aa, chain - ## HITS:1 COG:no KEGG:EF0711 NR:ns ## KEGG: EF0711 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 31 344 1 314 314 578 98.0 1e-163 MNQQLFKWLHAISVIIFLFFIGSYSVEASEMTFSVKAILPDNQRTKETSYFDLRVAPNQT QNLQIELTNQTANDITVLASANAAITNDNGLADYSHAETKKDPSAPFTFNEIAQLPKEIQ LPKHSTKTVECQLILPEKPFNGYVLGGLYFEQKSDEQPAHSENGVAINNRFSYVVGVLLS ETDEPVQPELSLNEVKTDQANGRNRVLMNLQNKQAAMIKKLQVDASLYYEKEAKPRYENH QESLTMAPNTNFNYRIDLKEQPFVPGNYTVKIKANDGYQDYSWEKHLVIQEKEAKKYNAT AVNLPPEKHTNFPWKLVTSITLVFLFILGSTIYYFKKKIREAQQ >gi|307679227|gb|GL457020.1| GENE 21 19658 - 20395 829 245 aa, chain - ## HITS:1 COG:no KEGG:EF0713 NR:ns ## KEGG: EF0713 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 245 1 245 245 373 99.0 1e-102 MKKIVRISSILFVATPLMLLNSPKVEAAQVASIQSNADITFALDNTVTPPVNPTNPSQPV TPNPADPHQPGTAGPLSIDYVSNIHFGSKQIQAGTAIYSAQLDQVQNSTGDLISVPNYVQ VTDKRGLNLGWKLSVKQSAQFATSDSTPAVLDNASLTFLAATPNSTQLLSLAPLTVPVTL DPTGAATSPVATAALSTGMGTWTLAFGSGATAAQGIQLTVPATTKKVAAKQYKTTLTWIL DDTPL >gi|307679227|gb|GL457020.1| GENE 22 20450 - 22735 1502 761 aa, chain - ## HITS:1 COG:no KEGG:EF0714 NR:ns ## KEGG: EF0714 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 761 3 763 763 1282 98.0 0 MNKFVWGIFSCIISWLFLSLTQPLIAHSETLNPTTHASTFSETFTSVSTEQQTTQATDIV EQETEQTHASSENDEPMAPTPASVSVGNSTLKSTLSTGTYNQDIITLSYEYSVTLIGLAI NDRPIIAIQLPTEISSQLDNDTLKQQDFLTLLTGTVSYPGTATQDIHSSTNGVSLSYSST YHSVYLTFPSSTLVLLPGTKWSAAISFDVGALYKRGISIPPALNGKDYPIRGTFTDVGTG LGAINIIIGNNTKTGVISKAQLSLGNYPVPQVTPAKLTQPNHLDTTVTGTIQQVQDPNYN YSVQLTLNRHDGTTTPIVVKGISVDAAGNFSTSLASPLEYGDTLSTIVFARSKTSTDYIQ SSPSADQSVNWSIQPVTNVVANAGSTQLSGKASQVSNGTYQVKVQINGGSIYTTSLDSNG HFQFANLPTFQGGETVSLWVQGLSNRTGLPLLTSSTVSQTVAYSVPQLTVTQIIERKNAQ GLWEAANSVVSGQIIRFTLTTRLTNQPATWMNQQLRATVPKGLSQLSAATLTKQSAAGLS TPIAGLQLLTDSSTGLPYWSYHNSLPADNFTEANTQFTLQYTATVTEEWINQFLLFSSTV TGNDGGGTPITPITKEQSLPIKNGTLRFVQMPTTVSFKNLPFPSKRTLYSPSTISAPFLI ADGRVAKTPWHLLVRESQPMHSTSTNKTIQQAFIYRKNGSDFPISSLATEVYQYTATDDN NVEIPWNQQNGLFLSVAPDLNLTVKESYTAELQWILSDTPL >gi|307679227|gb|GL457020.1| GENE 23 23089 - 24372 2049 427 aa, chain + ## HITS:1 COG:SPy1896 KEGG:ns NR:ns ## COG: SPy1896 COG0544 # Protein_GI_number: 15675709 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) # Organism: Streptococcus pyogenes M1 GAS # 1 427 1 427 427 456 63.0 1e-128 MSAKWEKKGTNDGVLTFSIEQAVIEKGLTQAFNKVKKNLNVPGFRKGKVSRTVFNRMYGE EALYEDALNAVLPEAYEAAVLEAGIEPVAQPKIDVESMNKGEDWVITAEVTVKPEVKLGE YKNLTVSKQDREVTDEDVEARLKREQESQAELVIKEDAAAENGDTVVIDFEGFLGDEAFE GGKGENYSLELGSNSFIPGFEDQLVGKKAGEEVEVNVTFPEDYQAEDLAGKEAVFKVTVH EVKAKELPELDDEFAKDVDDSVESLDELKEKFRKELTEAKEAAAEEAKDEEAIRLAVENA EIVELPHVMVHDEVHRSMDEFLNNMQRQGISPEMYYQLTGSTEEDLHKQFEGEAETRTKT NLVIEAVAKAENIEVTQEDIDAEVKDLAEQYNMPEAQVRKVLNNDMLEHDIRMKRAVETI TETAVEK >gi|307679227|gb|GL457020.1| GENE 24 24484 - 25146 633 220 aa, chain + ## HITS:1 COG:no KEGG:EF0716 NR:ns ## KEGG: EF0716 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 220 1 220 220 399 99.0 1e-110 MDKNYSKIKYGLVVFGILCLTYNLWEFFTAKYSTKQGVTFVIECLLGIGLIFLPDLVNKF LKIIMPPTIVYFYWFFLFISVFLGTSLHMISIISFWDKILHFVSPMLLTAVGYGIAAFLL KKTKYADVSPWLFLLFGFAFAGLCGVFWEFWEFICDSLGNMNLQRYNMSNGQPFIGRAAL MDTMGDLFTNTLGAFVMGVYTYIRSKGNPKYLENYAIKRK >gi|307679227|gb|GL457020.1| GENE 25 25201 - 27123 2559 640 aa, chain - ## HITS:1 COG:SPy0855_3 KEGG:ns NR:ns ## COG: SPy0855_3 COG1299 # Protein_GI_number: 15674888 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Streptococcus pyogenes M1 GAS # 299 634 2 358 360 420 65.0 1e-117 MNINDLLIKDVMIMDLQATDKKGAIDEMVQKLYDGGRISDIDTYKEGILKREAQTSTGLG DGIAMPHAKNSAVKEPTVLFAKSKKGVDYEALDGQPTYLFFMIAAPEGANDTHLQALAAL SRLLIDPEFVGKLKEAETPEAVQALFQAAEDQKEAEEKAEQEQTTPAPESNRKYIIAVTA CPTGIAHTYMAEDALKKKAKEMGVDIKVETNGSEGIKNRLTAEDIARADGVIVAADKKVE MNRFDGKKLVNRPVSDGIRKTEELINLAISGEAPTFHGSDSAASDQEDSAEGSIGSRIYK DLMNGVSHMLPFVIGGGIAIALSFMIDQFIGVPQDQLANLGNYNDVASWFNQIGGAAFGF MLPVLAGFIASSIGDRPGLVAGFAAGALANAGGAGFLGALIGGFLAGYVVVLLRKVFKGL PKSLDGIKTILFYPVFGLIITGLLMLVINIPMKAINDALNHFLLGLDGTNAALLGALLAG MMAIDLGGPVNKAAYVFGTATLASTVAEGGSVVMASVMAGGMVPPLAIFVATRLFKNKFT KDQQDAGLTNIVMGLSFVTEGAIPFAAADPLRVIPSLVVGSAFTGALVGAFGIKLLAPHG GIFVVFLLSNPLLYLLFILIGAIISGIVYGLLKKPVEVPA >gi|307679227|gb|GL457020.1| GENE 26 27147 - 28064 996 305 aa, chain - ## HITS:1 COG:lin2430 KEGG:ns NR:ns ## COG: lin2430 COG1105 # Protein_GI_number: 16801492 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Listeria innocua # 1 304 1 304 307 365 63.0 1e-101 MIYTVTLNPSIDFIVHVDHLQIGDLNRMTNDFKLPGGKGINVSRILKRMETESTALGFLG GFTGSFIADWLKKEEIQTNFTPVSADTRINIKLKSDTETEINGLGPALTNEEIQELKQAV SRVQAGDIVVLSGSTPASLRKGFYEELIQIVKEKGAEFVIDTTGEDLMNALSQKPLLVKP NNHELAELYHTTFTSVEDILPYGHRLLEEGAQHVIISMAGDGALLFTTEGVYRSNVLERP LKNSVGAGDSMIAGFIGNFSKTQDPLEAFKWGVACGSATAFSDDLASEDFIQELIHEVTI EKISE >gi|307679227|gb|GL457020.1| GENE 27 28061 - 28813 754 250 aa, chain - ## HITS:1 COG:lin2431 KEGG:ns NR:ns ## COG: lin2431 COG1349 # Protein_GI_number: 16801493 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Listeria innocua # 1 250 1 250 250 221 48.0 1e-57 MLTEERHQKILQLLDQKSVVKSQELANLFNASESTIRRDLQELEDANLLERIHGGAKRIL NLGFEQNMTEKSIKNTHEKQKIASLAASCVQDGDMIYLDAGSTTLEMIPFLVGKQIHVVT NSVHHAAKLSDMEIPTIMLGGTLKLSTKAIIGATSMEQLQHFRFNKAFLGTNGAHLEFGL TTPDPEEAALKALAIHQAETAYVLLDHTKFNEVTFTKVEELESVTLLTDYCPAESLQGFQ QKTILMEANK >gi|307679227|gb|GL457020.1| GENE 28 28949 - 30508 1569 519 aa, chain - ## HITS:1 COG:SP1157 KEGG:ns NR:ns ## COG: SP1157 COG0038 # Protein_GI_number: 15901022 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Streptococcus pneumoniae TIGR4 # 36 492 42 499 516 326 46.0 6e-89 MNNDVHEIKQLDGTRIGFILKGIVVGILVGFVVSLFRLGIEKIGEQVVHLYQTFHEKPFW MIPWFLFSLVLAYLLGRLIKSEPAIKGSGIPQVEGQLQGQLEIHWFPVLWKKFIGGILAI SPGLFLGREGPSIQLGAVVGQGYSQWRQSTKSEEKILISSGASAGLAAAFNAPIAGLLFV LEEVHHSFSPLVWLTSFSAAISANFVSLHFFGLQPVLYIGPVKSLPLEYYWTLVLLGVLL GLLGWIYQKTLLSLPKVYGKIKGLSSNYYGFVPFILILPIGYFFPHLLGGGNQIVLALGN QPATIWALVGLLVLRFVFSMVSYGSNLPGGIFLPILTLGAIIGTLYGSLLVQYVGMDPIF VKNFLIFSMAGYFTAIGKAPLTAIILVTEMVGNFSHLMSLGVVALVSYITIDSLGGKPIY ESLLERLVPSKVSNIRGHKTIIELPITAESSLDDTMVRDFVWPKQMLLTSIRRGESEILT HGDTVMHVGDVLIILTDEKLAYQVKKEIYQKTLPNDLVN >gi|307679227|gb|GL457020.1| GENE 29 30673 - 32931 2790 752 aa, chain + ## HITS:1 COG:SPy1267 KEGG:ns NR:ns ## COG: SPy1267 COG0210 # Protein_GI_number: 15675225 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Streptococcus pyogenes M1 GAS # 7 751 4 771 772 886 59.0 0 MTQKHALVQGMNPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILA ITFTNKAAKEMKERVNKLLETGGEDVWVSTFHSMCVRILRRDVDQIGYNRNFTIIDPSEQ KTLMKRILNDLNIDSKKYDPRSILGTISNAKNELQTPEKVAEMQGSLYEEIVAKCYEAYQ KELRKNQCMDFDDLIMNTIRLFNEQPDTLAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAA RFKNLCVVGDADQSIYGWRGADMQNILDFEKDYPDASVILLEQNYRSTKNILAAANDVIK NNRNRREKELWTENIDGEKIVYYRGDTERDETQFIVSQIQKEMRENDRIYGDFAVLYRTN AQSRVVEEMLLKSNIPYTMVGGHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRG IGKSSIEKLRLFADTHGWALLEAAQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTIT ELVKETLQRSGYREALMAQNNLESQARLENLDEFLSVTQEFDKRFEAQNNDDPNGEETKL ADFLTDLALVSDLDNLEESSSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRAMLEESE LEEERRLAYVGITRAEEALFLTNAYSRTLYGRTQYNRPSRFLEEIEAERLMKQGAAANLQ KAPARTFDPKVFKPSASKPAYTQPATKSVSNKVASGGEKVSWQAGDKVQHKAWGVGTVVR VGGSAKDLELDIAFPEKGIKRLLAAFAPIEKI >gi|307679227|gb|GL457020.1| GENE 30 33057 - 35087 2311 676 aa, chain + ## HITS:1 COG:lin1870 KEGG:ns NR:ns ## COG: lin1870 COG0272 # Protein_GI_number: 16800936 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Listeria innocua # 10 671 2 663 671 798 59.0 0 MEQQPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLI TPDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGKPVAYCCELK IDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPISVEVRGECYMPK QSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMKAKTQ FEALEELSAIGFRTNPERQLCQSIDEVWSYIEEYHEKRSTLPYEIDGIVIKVNEFALQDE LGFTVKAPRWAIAYKFPPEEAETVVEDIEWTIGRTGVVTPTAVMAPVRVAGTTGSRASLH NADFIQMKDIRLNDHVIIYKAGDIIPEVAQVLVEKRAADSQPYEMPTHCPICHSELVHLD EEVALRCINPKCPAQIKEGLNHFVSRNAMNIDGLGPRVLAQMYDKGLVKDVADLYFLTEE QLMTLDKIKEKSANNIYTAIQGSKENSVERLIFGLGIRHVGAKAAKILAEHFGDLPTLSR ATAEEIVALDSIGETIADSVVTYFENEEVHELMAELEKAQVNLTYKGLRTEQLAEVESPF KDKTVVLTGKLTQYTREEAKEKIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAESLGVT VWNEQEMVDALDASHF >gi|307679227|gb|GL457020.1| GENE 31 35241 - 35351 164 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSVEAALGLMISFAILVVTIIFGILALVLDNKNNRS >gi|307679227|gb|GL457020.1| GENE 32 35669 - 35974 472 101 aa, chain + ## HITS:1 COG:L0475 KEGG:ns NR:ns ## COG: L0475 COG0721 # Protein_GI_number: 15672144 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit # Organism: Lactococcus lactis # 3 97 4 98 101 108 64.0 3e-24 MAITEEQVKHVAKLSKLSFSEEELADFTNQLDKIIDMVELLEEVDTTGVPFTSNVNESIN VMREDVATPGMDRKELMRNVPESENGYIKVPAIMDNGEAGA >gi|307679227|gb|GL457020.1| GENE 33 35974 - 37443 399 489 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 [Phaeobacter gallaeciensis BS107] # 1 472 1 452 468 158 28 2e-37 MEKLYDKSLTELHDLLVSKEITAVDLTEETLNRIQDTEEQLGSFITVSEEKAMALAKAID LKGITESNPLAGIPIGIKDNIVTKDILTTAGSKMLHNFDPIYDATVMDKVYQADMIPVGK LNMDEFAMGGSTETSYFKKTKNAWDQTKVPGGSSGGSASAVAAGQVPVSLGSDTGGSIRQ PAAFNGIVGLKPTYGRVSRFGLIAFASSLDQIGPLTRNVKDNALALNAISGYDEKDGTSA GVSVPDFTADLTGDIKGMKIALPKEYLGEGVQPDVREAVLKAAETFKSLGATVEEVSLPH SKYGVAVYYIIASSEASSNLQRFDGIRYGYRSENVQNLEDVYVNSRSEGFGTEVKRRIML GTFSLSAGYYDAHFKKAGQVRTLIKQDFENVFADYDLIIGPSTPTVAFGLGENINDPITM YMNDILTIPVNLAGLPGMSIPAGFSEGLPVGLQIIGKHFDEHTMYKAAYAFEQATDFHTK KPVILGGND >gi|307679227|gb|GL457020.1| GENE 34 37443 - 38873 1787 476 aa, chain + ## HITS:1 COG:lin1866 KEGG:ns NR:ns ## COG: lin1866 COG0064 # Protein_GI_number: 16800932 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) # Organism: Listeria innocua # 1 476 1 476 476 725 77.0 0 MNFETVIGLEVHVELKTNSKIFSSAPAHFGAEPNSNTNVVDWSYPGVLPVMNKGALEFGM KAALALNCEISKETHFDRKNYFYPDNPKAYQISQFDQPIGHDGWIEIEVEGKKKKIRIER VHLEEDAGKNIHGTDGYSYVDLNRQGTPLIEIVSEADMRSPEEAYAYLEALRSIIQFTEV SDVKMEEGSMRCDANISLRPYGQEEFGTKAELKNLNSMNFVKKGLAYEEKRQAKVLLSGG EIQQETRRFDEATSTTLLMRVKEGSSDYRYFPEPDVPRFSIDDEWIEKVRASLPEMPASR RARYISELGLPEYDAMVLTLTKEMSDFFEATLANGADAKQASNWLMGEVSAYLNSEKVEL ADTKLTPENLAGMITLINDGTISSKIAKKVFKELIENGGDAKEVVEAKGLVQLSDPAQLL PMINEVLDNNQQSIDDFKNGKDRAVGFLVGQIMKATRGQANPGVVNKLLQEELSKR >gi|307679227|gb|GL457020.1| GENE 35 38892 - 39980 1310 362 aa, chain + ## HITS:1 COG:SPy0752 KEGG:ns NR:ns ## COG: SPy0752 COG1597 # Protein_GI_number: 15674801 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Streptococcus pyogenes M1 GAS # 3 348 6 337 340 407 61.0 1e-113 MKKARVIYNPTSGKELIKKNLADILSILEECGYEASAFATTPEENSARNEAHRAARAGFD LLVAAGGDGTINEVVNGIAPLKRRPKMAIIPAGTTNDYARALKIPRDNIVKAAEVIKKNQ TVKMDIGQAGKNYFINIAAGGHLTELTYEVPSELKSIFGYLAYLAKGAEMLPRVKPIKMR MTYDEGVYEGNASMFFLGLTNSVGGFEQIVPDAKLDDGKFSLIIVKTANIFEILHLVALM LNGGKHVEDHRLIYTKTSYLHAETLEKNNKMMINLDGEYGGDAPMTFKNMHQHIEIFANG DALPSNAIMGSVLTGSDEIVVESEDEEEEAYNEASKEFVKEVERLTDEDIDGDGKIAEKE KH >gi|307679227|gb|GL457020.1| GENE 36 40180 - 41553 1606 457 aa, chain + ## HITS:1 COG:BH0687 KEGG:ns NR:ns ## COG: BH0687 COG2265 # Protein_GI_number: 15613250 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Bacillus halodurans # 5 452 7 454 458 485 54.0 1e-137 MKNYPVKKNDVIEVEIIDLTHEGLGVAKVDHYPLFIENALPGEKLEIKVLKTGKSFGYGK VLTVLKSSEQRVPVKDENFTKVGISPLQHLAYGAQLSFKTQQVENVMQRVAKLPEVPVLP TIGMNDPWHYRNKAQIPVRKIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDI MRKYSVKPYNESDNSGNLRHIVVRRGYHTGEMMVVLITRTPKLFPISKIVPDILEAIPEV VSIVQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKV KEYAALTGNEIVVDAYCGIGTIGLNLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATF TAGLAEELLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARD IALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTKAVD >gi|307679227|gb|GL457020.1| GENE 37 41554 - 41682 219 42 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227517695|ref|ZP_03947744.1| 30S ribosomal protein S9 [Enterococcus faecalis TX0104] # 1 42 1 42 42 89 100 1e-16 MNEKEKMLELIKKKQGGGRSKKMETPKNDRKNMRKGPKIFNK >gi|307679227|gb|GL457020.1| GENE 38 41822 - 42139 434 105 aa, chain + ## HITS:1 COG:no KEGG:EF0730 NR:ns ## KEGG: EF0730 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 105 1 105 105 179 100.0 2e-44 MEYVTTLEELEEKITDNRLQAVFLTAKNCSVCTVDKPIVEKIATKYEFPTYIAEADKSPE IIGQLNAFSAPTIILYYEGKEIHRQAKIINFQEIEKRVRQVQENS >gi|307679227|gb|GL457020.1| GENE 39 42182 - 43147 646 321 aa, chain - ## HITS:1 COG:L0226 KEGG:ns NR:ns ## COG: L0226 COG2771 # Protein_GI_number: 15673683 # Func_class: K Transcription # Function: DNA-binding HTH domain-containing proteins # Organism: Lactococcus lactis # 1 315 1 325 328 210 42.0 2e-54 MTFVFIYNILLIILYSFTSTFTLNLYLKNKQPIFLLLLFLMVIFICDNVIVYMTEFINSF ANEYNQTFMTAPFLKTIIFICCNFAYLAIINTISGRPFKNYQFVWLFLIGLWMLAIPFSQ NSALKVWLYYLPNQLFLIYLGCYALYQLRIDPLSALAKKYLRFIGWLSIGFGVAILLEDT FVIFNIDQYSDIVFKINNRNVSEDIYTIILSIAIIYFCNRDFTLSVLEKDAAKLEENQSD EPVLLAPFCDAYQLTQREREVLSLLLECKTNQDIANELFLSIGTVKTHIHNIFVKLEVNK RAEVFVSYQLFSQQQTEHLAR >gi|307679227|gb|GL457020.1| GENE 40 43426 - 44445 1259 339 aa, chain + ## HITS:1 COG:L0113 KEGG:ns NR:ns ## COG: L0113 COG0078 # Protein_GI_number: 15673682 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Lactococcus lactis # 2 334 6 338 340 554 79.0 1e-157 MKRDYVTTETYTKEEMHYLVDLSLKIKEAIKNGYYPQLLKNKSLGMIFQQSSTRTRVSFE TAMEQLGGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVERHHSIVDLANCATIP VINGMSDYNHPTQELGDLCTMVEHLPEGKKLEDCKVVFVGDATQVCFSLGLITTKMGMNF VHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDASSVEGADFLYTDVWYGLYEAELSEE ERMKVFYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVTDEVIDGKNSICFDEAENRLTS IRGLLVYLMNDYEAKNPYDLIKQAEAKKELEVFLDTQSI >gi|307679227|gb|GL457020.1| GENE 41 44512 - 45888 1458 458 aa, chain + ## HITS:1 COG:L138484 KEGG:ns NR:ns ## COG: L138484 COG0531 # Protein_GI_number: 15673681 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Lactococcus lactis # 3 448 4 449 466 583 73.0 1e-166 MEGKKKFSLTSAILSVICVVFVAEAAAPVAAIGNSQFFWWIFLLIAFLLPYGLISSELGT TYIGEGGIYDWVTKAYGHRWGARVSWYYWINYPLWLASLAVMTPELLTTITGIKFSTPMM IIVELIFTWIVVWISFYPVSDSIWILNGAAVIKMVLAVLIGGLGLYVALTKGVANEFTLK SMLPTFDLRSLSFISVIIFNLLGFEVICTFADDMENPKKQIPQAIVAAGLVIAAIYIFSA FGIGVAIPTDQISTGSGMMDSFKLLTGSTEGWFIMLMAFLFLLTLFGNMISWSLGVNNTA CYAAENGDMPKFFEKRSKKNDMPIGAALMNGIVASVVIVLAPILPNQDLFWAFFSLNVVL FLLSYIPVFPAFYKLRKIDPDTPRPFKVNGKPGFLKVLVVLPMIMIIISLIFTAVPLDFS PAALNEKLPITIGAIIFILFGEVIIYVKKIKKGTKENG >gi|307679227|gb|GL457020.1| GENE 42 45881 - 46978 1107 365 aa, chain + ## HITS:1 COG:L136332 KEGG:ns NR:ns ## COG: L136332 COG2957 # Protein_GI_number: 15673679 # Func_class: E Amino acid transport and metabolism # Function: Peptidylarginine deiminase and related enzymes # Organism: Lactococcus lactis # 1 364 1 364 366 651 82.0 0 MAKRIVGSTPKQDGFRMPGEFEPQEKVWMIWPERPDNWRDGGKPVQEAFTNVAKAISQFT PMNVVVSQQQFQNCRRQLPPEITVYEMSNNDAWVRDCGPSFVINDHGEIRGVDWTFNAWG GLVDGLYFPWDQDDLVAQKICEIEHVDSYRTDDFVLEGGSFHVDGQGTVLTTEMCLLSEG RNPQLSKEAIEQKLCDYLNVEKVLWLGDGIDPEETNGHVDDVACFIAPSEVACIYTEDQN SPFYEAAQDAYQRLLKMTDAKGRQLKVHKLCCPVKNVTIKGSFKIDFVEGTMPREEGDIC IASYMNFLITNDGVIVPQYGDENDCLALEQVQTMFPDKKIVGVNTVEVVYGGGNIHCITQ QEPKR >gi|307679227|gb|GL457020.1| GENE 43 46990 - 47919 1089 309 aa, chain + ## HITS:1 COG:yqeA KEGG:ns NR:ns ## COG: yqeA COG0549 # Protein_GI_number: 16130776 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Escherichia coli K12 # 3 309 4 310 310 296 52.0 4e-80 MSKIVIALGGNALGNSSKEQLAKAQTAAKSIVDLIEQGHQVVIAHGNGPQVGKIRLAFEE TSQSPEDVVPFPECTAMSQGYIGYHLQQAIDEELVARNLGEQPVVTLITQVVVDPKDPAF TKPTKPIGGYYDEETAKQLMAETGNVYQEDAGRGWRRVVPSPKPIDIYEKVSLRTLVDAE QIVIACGGGGVPIAYDGPVYHGVDAVIDKDFAAAKMAELIEADVFVVLTAVEHVFVNFGQ ANQQALTDVTVTAMQQYIEENQFAPGSMLPKVEAAISFAESKPNRQSIIGLLELASEAIK GESGTRITQ >gi|307679227|gb|GL457020.1| GENE 44 48116 - 49702 1881 528 aa, chain + ## HITS:1 COG:lin0842 KEGG:ns NR:ns ## COG: lin0842 COG0154 # Protein_GI_number: 16799916 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases # Organism: Listeria innocua # 29 508 141 631 639 270 38.0 4e-72 MSKFLKVIGIIAVLLVIIGAAAYWFILKKFTPEAETPAMYNQERIVKTIEDQLKETDVQK ARTKAPLIIEKNITELQQAIADGALTYEELTAFYLDRILQFDQIDNGMNSISEINPQAIK EAKAFDQQASQTPKKPLYGIPVTLKENINTTNMISSAGAYALRTFKPKEDAEVVKKLTEA QTLILGKVNLSELANYMSMKAPSGYSSKHGQTLNPYGPLKITPSGSSSGSAASVTMNIGA FSLGTETMGSIVSPASHQSVVGFKPTHSSVSGEGVLPLAPSLDTVGPIARSVVDVAQGYN AFKKDTVPSIDSTKFTKNNLQGQRIGLLEMPSAEEEFATAKKAIQKAGAEVIPLTPDMEG IDGGKVISNEFKFALEEFAKRYDLPFKTLEELIAYNQQDKKVRAKYGQDLLEADVKKKQP DKEIIQTTIKKAQQTFDALLKKQQLDGYAFIDSEGTGLSAVAGYPELTVPLAKNSEGQPY GLTFTQTANKEQTLFKQAYSFEQSTKGRIVLSDNELLANSKKINRDEQ >gi|307679227|gb|GL457020.1| GENE 45 50257 - 50955 563 232 aa, chain + ## HITS:1 COG:PM1838 KEGG:ns NR:ns ## COG: PM1838 COG3201 # Protein_GI_number: 15603703 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinamide mononucleotide transporter # Organism: Pasteurella multocida # 1 225 1 226 234 90 30.0 2e-18 MNKNFLVNDFKGWETRSYLFLALMVGVQLVAFAINPSNWITLVGGLAGIICVNLIAQGKV SNYIFGLISAVIIGYFGLVTRVYAEVLLQSFYIIMDITGLYAWLRASEDGSGQVTEVKVL KGIQWLYAFFTWLLIGVAAYILLGFVNDAQQTLDAITFSVSATGMLLMIKRYQSQFVFWL LGNIFSILLWFRAGTHAGGDYAIFVMYCMYTFNSIFGMFNWLKIKNKMEKNR >gi|307679227|gb|GL457020.1| GENE 46 50964 - 51608 898 214 aa, chain + ## HITS:1 COG:L93481 KEGG:ns NR:ns ## COG: L93481 COG1428 # Protein_GI_number: 15672477 # Func_class: F Nucleotide transport and metabolism # Function: Deoxynucleoside kinases # Organism: Lactococcus lactis # 1 213 1 213 217 293 71.0 2e-79 MAVIVLAGTIGAGKSSLTALIANRLGSEAFYESVDDNEVLPLFYAEPEKYAFLLQIYFLN KRFDSIKQALTHENNVLDRSIYEDSLLFHLNADLGRANETEVKVYDDLLQNMLQELPYAA HKKRPDLLVHIRISFPKMLERIKKRGRPYEQIETDPTLYDYYQMLNERYDQWYEDYDESP KIQIDGDKYDFVEDPEACQYVLALIEKKIEELER >gi|307679227|gb|GL457020.1| GENE 47 51958 - 52389 172 143 aa, chain + ## HITS:1 COG:no KEGG:EF0741 NR:ns ## KEGG: EF0741 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 143 1 143 143 243 96.0 1e-63 MGQIWFERILRWRKKAQRFLQGRYARFDELNRTLLLTSVVLALINIFTGYLWVRLLILIT VAYVCYRFFSKHIHPRLNENQRFILRKQRLMQKVHAFRKRHLTQKGYRYFKCPKCQQSLR APKGRGTIKVTCSNCQNQFIKKV >gi|307679227|gb|GL457020.1| GENE 48 52502 - 52888 617 128 aa, chain + ## HITS:1 COG:SP1558 KEGG:ns NR:ns ## COG: SP1558 COG4835 # Protein_GI_number: 15901401 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 122 5 128 128 93 44.0 8e-20 MEIKRQQEIVEAYHYDMRVPNSEVETDLRVSFSPIEVEEENYPENSSALVARLEFRIVFD EFVLSGAISQINHIIDRKIEKQEDISQEEVDELVRPLFSIVERLSYEVTEIALDRPGVQL NFQQSEEA >gi|307679227|gb|GL457020.1| GENE 49 52935 - 53270 461 111 aa, chain - ## HITS:1 COG:no KEGG:EF0743 NR:ns ## KEGG: EF0743 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 111 1 111 111 210 97.0 1e-53 MQKICWILSVNRDGAMLYVGSPANGGPWLFSNKEQQNIKAFFQPTYEIDFISYDVLSEEV PEAAFILYNEMLAPYLPEKITKVGQPITYVDIATKNYEQFKKALVAKSSQE >gi|307679227|gb|GL457020.1| GENE 50 53568 - 54959 1985 463 aa, chain + ## HITS:1 COG:BS_yhcL KEGG:ns NR:ns ## COG: BS_yhcL COG1823 # Protein_GI_number: 16077978 # Func_class: R General function prediction only # Function: Predicted Na+/dicarboxylate symporter # Organism: Bacillus subtilis # 1 461 1 460 463 424 57.0 1e-118 MTTFITVLVILAFIAVLFGFYQMQKKHLKFSTRVFSALGVGIVLGAIIQFAFGTDSKITT QSMEWIGIVGNGYVAFLQMLVIPLVFVSIVGAFTKMKESNKLGKISFNVLATLLGTTAVA ALVGIGTTLAFGLQGAKFTQGAAETSRIAELATRQDAIQDLTIPQQIVSFIPKNVFADFA GTRPMSTIGVVIFAAFVGVAYLGVRRKAPKEAEFFANLIDSLYKITMRIVTLVLRLTPYG VLALMINVVATSDFVAIINLGKFVLASYVALIIVFAIHMLILITLKVNPVTYLKKVFPVL SFAFTSRSSAGALPLNIETQTKALGVDDATANFAGSFGLSIGQNGCAGVYPAMLATIVAP TVGIDVFSLQFILMLVAVVTISSFGVAGVGGGATFASLIVLGAMNLPVAIVGLVISVEPL IDMARTAVNVNDSMVAGVLTSARIHELDRDVLNDRDVVLDANI >gi|307679227|gb|GL457020.1| GENE 51 55092 - 55472 561 126 aa, chain + ## HITS:1 COG:SA1340 KEGG:ns NR:ns ## COG: SA1340 COG0346 # Protein_GI_number: 15927090 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Staphylococcus aureus N315 # 7 120 6 121 123 81 40.0 3e-16 MFSNQVKIMLYVNNVEESSQFWQTFGFVEKEREEVDGTLVVEIAPSESAEAIIVLYDLAF IQKHSPEVAGNTPSLMFASDDIIGLYKKMQEAGVTVGEMVQLPTGLVFNFADNDDNYFAV MGQESK >gi|307679227|gb|GL457020.1| GENE 52 55625 - 56791 1031 388 aa, chain + ## HITS:1 COG:BS_pbpX KEGG:ns NR:ns ## COG: BS_pbpX COG1680 # Protein_GI_number: 16078758 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Bacillus subtilis # 74 379 85 386 391 143 28.0 4e-34 MRKRHAKKRHGGVNWLFIVCLLVVIGGSGYLIKTFFFTRDSQVSQESKVVLEEDRRSDNY ANLTKEIVAPDSGELDQKIQETNYIGSALIIKDDQVLVNKGYGFANFEKQQANTPNTRFQ IGSIQKSFTTTLILKAIEEGKLTLDTKLATFYPQIQGAEDITISDMLNMTSGLKLSAMPN NIVTDEEIIQFVKQNTIQVNKGKYNYSPVNFVLLAGMLEKMYQRTYQELFNNLYHKTAGL KNFGFYETLLEQPNNSTSYKWTEDNSYNQVLSIPAASFAHEFGTGNVDMTTGDLYWYLHQ LMSGHLVSTALLQKLWTSSQQSSYHGGIYVHDNYLRLHGVEAGQQALVLFSKDMKTGVIL LTNCVNPAKYKELIGSLFHDVTNLTVKF >gi|307679227|gb|GL457020.1| GENE 53 56890 - 57600 748 236 aa, chain + ## HITS:1 COG:mlr4962 KEGG:ns NR:ns ## COG: mlr4962 COG4420 # Protein_GI_number: 13474144 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Mesorhizobium loti # 32 225 92 285 307 167 45.0 1e-41 MKQSKNKQVVIGESTKKNIYLQDIEQETQAFILQNNPQLTAESMITLAELLNYRLDYMKQ LVANDSEKIQQLNELVVQHIKEDKLISNNMNEKMEKKLTFGQRAADTIAKFGGSWVFIGF FCFVLIAWIVINSTTLLGQPFDKYPYILLNLALSCLAAIQAPIIMMSQNRQEARDREQAN NDYKINLKAEVEINLLHEKMDYIINNQLENLVKIQNIQIELLGELQEQLAATSEKE >gi|307679227|gb|GL457020.1| GENE 54 57962 - 58912 1353 316 aa, chain + ## HITS:1 COG:SA2481 KEGG:ns NR:ns ## COG: SA2481 COG1054 # Protein_GI_number: 15928275 # Func_class: R General function prediction only # Function: Predicted sulfurtransferase # Organism: Staphylococcus aureus N315 # 1 308 1 308 318 494 75.0 1e-140 MKYQVLLYYKYTTIEDPEAFAKEHLAFCKSLNLKGRILVATEGINGTLSGTVEETEKYME AMQADERFKDTFFKIDPAEEMAFRKMFVRPRSELVALNLEEDVDPLETTGKYLEPAEFKE ALLDEDTVVIDARNDYEYDLGHFRGAVRPDIRSFRELPQWIRENKEQFMDKKIVTYCTGG IRCEKFSGWLLKEGFEDVAQLHGGIANYGKNPETRGELWDGKMYVFDDRISVEINHVDKK VIGKDWFDGTPCERYINCANPECNRQILTSEENEHKHLGGCSLECSQHPANRYVKKYNLT EAEVAERLALLEAVEV >gi|307679227|gb|GL457020.1| GENE 55 59136 - 59474 260 112 aa, chain + ## HITS:1 COG:no KEGG:EF0750 NR:ns ## KEGG: EF0750 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 112 1 112 112 194 98.0 8e-49 MKIIKRFSLVCLGLLIIGLQTKSVMAEENNYESNGQASFYGTYVYENEKESNDVAYTQQS EEQGRNNLAASGQAVLPKTGESENPLYSLIGVSLLGVVIYLINKMKREKELI >gi|307679227|gb|GL457020.1| GENE 56 59474 - 60205 898 243 aa, chain + ## HITS:1 COG:no KEGG:EF0751 NR:ns ## KEGG: EF0751 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 243 1 243 243 423 99.0 1e-117 MKKTVLLTSATILLGVGFQAINASAAETFPKEYNTEGTITFEAGDNEITPPVDPENPDPT DPVDPIDPPGPGTGGALSIDYGSKFKFGTQKISTADQTYYAAPDEMKDGSKKPTYVQVTD KRGTLAGWKLTLSQPEQFKTATGEELVGAQLTFTKAEAASMVDEKYKPSEVSSTISLTPG VNNNLAMNAKKETGVGTWVYRFGSNEATNKEAVQLFVPGKSVKLAQQYSTKLVWALEDTP ANN >gi|307679227|gb|GL457020.1| GENE 57 60222 - 61001 900 259 aa, chain + ## HITS:1 COG:no KEGG:EF0752 NR:ns ## KEGG: EF0752 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 259 1 259 259 455 99.0 1e-127 MKKQFTGIVLCSTFAVAGWSLQAKAEEPKEYRSNGLVEFIPNVDPTEPVDPENPDPEKPV KPIDPTDPEGPNPGTQGPLSIDYASSFDFGKNRISNKDQVYFARAQQYQENQKETPNFVQ ISDNRGTNSGWSLRVTQKEQFKATKATLNSQLTGAQISLANPTVNSNAQNVVKPEATNKI ALVPGTASLVAAAKQGTGAGTWATYWGKVEVVAERDETNTVHNVNVTKDVALSVPGSTPK DAVKYQTKLLWTLTAVPGI >gi|307679227|gb|GL457020.1| GENE 58 61021 - 63120 1982 699 aa, chain + ## HITS:1 COG:no KEGG:EF0753 NR:ns ## KEGG: EF0753 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 699 1 699 699 1272 98.0 0 MRNKQSLVFLASSLFLLLLAPITSEAISNPSTNINEVNREIVEESANDQATSAPSHSETL EQEPSLETTTTTDNHPAETDQSTATLEPSEQQKDDDNSATESAIVEPQPRMLAAPYATSL PDDPNIIPIDKVFQEPIGNATSILEGGKLLQLNPAVKSQKGAIWSKKPISLLSDFTFKSY LYLGNEYANAGDGMTFTLTNDPRMSTTPQEVIGSPGMGIGAYSTKAGQPYVRNALSIEFD TYKNTGSSNRMDREISQDKGNGHLAFVTPKANNNSYTGEHSGVTVAPTYLSNGTWRMLTV RWNAATKALTYDLEGVGTNTYVVSDLNAQFGATTVYWGFTSSTGGKYQENALAMTQIPTN VTSQAALSVNGQEFSSAVEAVKNDQVRLRNTLNIDNDFIEDRQPQVSIDLPDELAYEENS LMIDGKKVAAKDLTQTGNHLTIALNDYLVLKKDMIIELKTTLQDNTPEKVLTMNFDYYEE GTLLQKSNNVTITIPKPTEKTVTVFYKDAEGKDIAPPKSVTGKIGAPYQEKPLDISGYVF TKDSGNAEGTMTEETKDIYFYYRLGELYFKETPKQITFGTEKIRNQPLIKLGHPTEGLKV VDERNANNWRLQLKQTQPLTNDSIVMPDVFSFVSTAGSSQITNEAITLLESNQKGETDLT ALLDESKQQGIQINVPVAYQRVGTFKARLSWALEDVPGN >gi|307679227|gb|GL457020.1| GENE 59 63143 - 63883 974 246 aa, chain + ## HITS:1 COG:no KEGG:EF0754 NR:ns ## KEGG: EF0754 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 246 1 246 246 391 100.0 1e-107 MKKVTTVCLSTFILGSLGMTSQAFAEDGGSYTSNGIVEFTPSEEPTNPVDPTDPTNPVDP IDPTDPEGPNPGTNGPLSIDYASSLDFGVQKITSKDQTYFAATQKYKTVGATDEVKEGPN YVQVTDNRGTEAGWSLKVKQEGQFKSTSGKELTGAAITFKNGNVVTASDSGKPTGPATIT LNSDGSQSDVMSAAKGNGAGTYLFDWGTDATTAAKSIELTVPGSTTKYAEKYATKLTWTL TDAPGN >gi|307679227|gb|GL457020.1| GENE 60 63959 - 65053 1033 364 aa, chain + ## HITS:1 COG:no KEGG:EF0755 NR:ns ## KEGG: EF0755 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 364 1 364 364 573 100.0 1e-162 MNRKKQRFLFFPILLILLALVPSNGFASEFNFAVTPIPSEKQVDKEKTYFDLLLAPNEET ELKVNLRNDTDKEVKVGISINSAITNSNVIVEYGENKGKKDQSLAFDIKDYVQYPSSVRL KPKSEQTVSINVKMPNTPFDGVLASGITFKEETSDEGKRQDDKSQGLSIKNEYSYVVALL MQQNKKKVEPNLLLKKVSPGQINARNVILVNLQNDQKTYINQVAFSAEITKKGHEEVLYK EEKANMQIAPNTNFSVPIALKGQPLKPGDYHLSMTVVGNKDAAGSFKKSINNESISFRNQ WQFEKDFTINGEVAKELNEKDVTLKENHSNLYLMIGLLLLLIVILIIAWLIWRKKKQEKN EREI >gi|307679227|gb|GL457020.1| GENE 61 65255 - 65704 286 149 aa, chain + ## HITS:1 COG:no KEGG:EF0756 NR:ns ## KEGG: EF0756 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 149 1 149 149 215 99.0 4e-55 MDKYKHLLLWSTLLLSFFQVTNVQAAEERNPIYNPTNPTEEIYPIENTGTPEKMEETNES TITSETQAEESSEDVSKKEVTTNNPKTNEERPSSKKSQHQVFFTDELFDASHITIVPNST GGAGTEGQNTFYLNFIRELVGTAIYGRKN >gi|307679227|gb|GL457020.1| GENE 62 65708 - 67156 909 482 aa, chain + ## HITS:1 COG:no KEGG:EF0757 NR:ns ## KEGG: EF0757 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 482 1 482 482 878 99.0 0 MMNYEIFLNKEDQRSYSLLRHLEESPTLSGTFIALREELSMSNFLVKKTLEKLKADIDNL KLSDSLTLVVSDVDVTLEIDGNYSSKLLLTKYLTESLSFKLVLSYFRGNYSLTKFAECNH VSTSVAYSTLQRLKKALKEYQIYFSKREIVGNQKAISFFLYKLFTLSNQPISELYSVKVY NEAKRVLQSVELNYTFTTYERRNFFHYLAIMINNEGRAVEGIDTRALNTFSEELIKKSQL AWALASKSLTYTIVFFLYLHGKLEKKYVIHEDPTIESLTRVFIGSFEKAFNCLEESTRNT LEEGLAIIHFNVIYFPINMFDDFEMDLQFFKQTYPEFYFYLIEYIRWLTAKHKKIAKANH CLFFNYLLLLINHVPVHLIAEPAKVLIDFSYGKEYNQFIKKNLSVYVNLNVEIIDPLSDT LPDVVITNLNNLYQEEQSKVMVWLDPPRSIDWVNLTQSLLTIQEEKYQQQKESTKTSGDP IE >gi|307679227|gb|GL457020.1| GENE 63 67266 - 69170 2113 634 aa, chain + ## HITS:1 COG:BH0744 KEGG:ns NR:ns ## COG: BH0744 COG2217 # Protein_GI_number: 15613307 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Bacillus halodurans # 22 630 32 636 637 455 43.0 1e-127 MSKQTGAHTHEEKGKNVPVILFFTGLALFFIGLFLGNMLLVKNILFSLAAILAGYHIIGE GFGDTYRDTKNNRKFSPNIHLLMTLAAVGSALMGSFEESALLILIFAAAHFLEDYAQGKS QREITKLLNLNPTEARLIRDDGSIQTVSVEQLKIGDRVQVLNGAQIPTDGVVIEGSTAVD ESSINGESIPKEKNSGDPVFGSTMNGSGTIVVEVTKDSSETVFAKIVQLVNQSQENQSEI ASKIKRFEPKYVTLVLAVFPLIVLGGALLFQLTWAESFYRGLVFLIAASPCALAASAVPA TLSGISNLAKQGVLFKGGSFLSNLAEVKALAFDKTGTLTKGKPEVTDYLFVDGLEDRQDE LVAVLTNMEKKSNHPLATAIVNRFEVETTALNLEVENIVGVGLVTTIADTTFRIGKPSSF EQVPTIIEKQTTKLASEGKTVVYFAENEQVIGLVALMDVPNEEAMNAIHYFKSQNIETTM ITGDAKLTGEAVGRLVGVDQVYANVLPEEKSAIVDQLKREVGMTGMVGDGINDAPALVNA DIGVAMGDGTDIAIDVADVVVMKNDLSKLGYAHRVSKRLNKIVQQNIIFSMLVVATLIIL NFLGIANIAFSVLIHEGSTLVVIFNGLRLLVNTK >gi|307679227|gb|GL457020.1| GENE 64 69206 - 69925 684 239 aa, chain + ## HITS:1 COG:BH3225 KEGG:ns NR:ns ## COG: BH3225 COG1285 # Protein_GI_number: 15615787 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Bacillus halodurans # 11 213 1 220 232 97 31.0 2e-20 MNSLKMIELSLTDVVIRMALAVVFGALIGLERSIKRKGFGISSNAILCLASCTISILQIQ SVDILVDVVKQNSALASIISMDITRYGAQVISGVGFLGAGIIVFRERKVSGLTTAVMMWN VTIIGLVIGMGFLTIAFINLVATLLVLALAHFKRKTPLKRLQLIVKMKEPMIKESRLHEQ LQASLEKGERLVELTLESEQEAVTAKISYVGKEGFWHSNLHHLLKEKGHVQSVSVTETI >gi|307679227|gb|GL457020.1| GENE 65 69973 - 70710 296 245 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 219 1 221 223 118 33 1e-25 MTEKILVEHLVKKYGDNTVLNDINVSINEGDVVCVIGPSGSGKSTFLRCLNQLEEASSGD IIIDGANLTDKNTDINQVRQHIGMVFQHFNLFPHLSILENIVLAPTDLGRLSKDEAEKKA LELLERVGLADKKDAYPDSLSGGQKQRVAIARALAMNPDIMLFDEPTSALDPEMVGDVLG VMKDLAKQGMTMVIVTHEMGFAKEVANRVMFIDGGNFLEDGSPEQVFENPQNPRTKDFLD KVLNI >gi|307679227|gb|GL457020.1| GENE 66 70712 - 72880 2679 722 aa, chain - ## HITS:1 COG:L165_1 KEGG:ns NR:ns ## COG: L165_1 COG0834 # Protein_GI_number: 15673741 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Lactococcus lactis # 1 521 1 507 509 453 45.0 1e-127 MKRKHFLLSFFVMMVTLLTFISGTSAHAEGKKYTIGTDLTFAPFEFQDSKGKYIGIDVDL LDAIAKDQGFEVDLKPLGFDSAVQAIQSKQIDGMIAGMSITDERKKSFDFSDPYFDSGLQ LAVKKGNDKIKSYDDLKGKTVAAKVGTESANFLEKNKEKYDYTIKNFDDATGLYKALENG EADAIVDDYPVLGYAVKNGQKLQLVGDKETGSSYGFAVKKGQNPELIKKFNAGLKNLKDN GTYDKILNNYLATGDETNTQDAGEQMKKITPKKEKYVIASDSTFAPFEFQNAQGDYVGID VDLVKRAAELQGFTVEFKFIGFSSAVQAVESGQADGMVAGMTITDDRKKAFDFSVPYFDS GIQIAVKKGNDKIKSYDDLKGKKVGVKIGTESADFLEKNKKKYDYSIKYLDTTDALYSAL EIGEVDAMMDDYPVIGYGVAQNQPLATPIPREKGGSYGFAVKKGQNPELLEMFNEGLKEM KRTGEYDKIIGTYVKDGNEAKEETADESTFVGFMQNNWKQLLHGLWMTILLTLISFVLAL IVGVIFGLFSVSPIKALRVLSTIYVDLIRGIPLMVLAFFIYFGLPGVLGFNIPVFIAGII TLTLNASAYISEIVRGGIKAVPVGQMEASRSLGLSYNRTMQKIILPQAIRIMIPSFINQF VISLKDTTILSAIGLIELLQTGKIIVARTLQSTMVYFVIALIYLILITSLTKLAKNLEKK VN >gi|307679227|gb|GL457020.1| GENE 67 73159 - 75156 2277 665 aa, chain + ## HITS:1 COG:SP1238 KEGG:ns NR:ns ## COG: SP1238 COG0556 # Protein_GI_number: 15901100 # Func_class: L Replication, recombination and repair # Function: Helicase subunit of the DNA excision repair complex # Organism: Streptococcus pneumoniae TIGR4 # 1 663 1 660 662 996 77.0 0 MIERETSNTFHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQE VNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI NDEIDKLRHSATSSLLERNDVIVVASVSCIFGLGDPREYSQQVVSLRVGMEMDRNELLKS LVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHALRVEFFGDEIDRIREVDALTGEIV GETEHVAIFPATHFVTNEEHMEHAISQIQEELEARLKVLRSENKLLEAQRLEQRTNYDIE MMREMGYTSGIENYSRHMDGRQEGEPPYTLLDFFPDDFLLVIDESHVTMPQIRGMYNGDR ARKQMLVDYGFRLPSALDNRPLRLEEFEQHVNQIVYVSATPGPYEMEQTETVVQQIIRPT GLLDPEVEIRPIMGQIDDLVGEINERIEKDQRVFVTTLTKKMAEDLTDYFKELGLKVKYL HSDIKTLERTEIIRDLRLGEFDILIGINLLREGIDVPEVSLIAILDADKEGFLRSERSLV QTMGRAARNAEGKVIMYADKITDSMQRAMDETARRRAIQEAYNEEHGIEPKTIIKEIRDL ISISKTADKDETVVQLDKSYEDLSRQEKADLLLKLEREMKDAAKALDFETAATLRDTILE LKAAK >gi|307679227|gb|GL457020.1| GENE 68 75274 - 78093 3082 939 aa, chain + ## HITS:1 COG:SP0186 KEGG:ns NR:ns ## COG: SP0186 COG0178 # Protein_GI_number: 15900123 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Streptococcus pneumoniae TIGR4 # 4 935 3 937 943 1501 79.0 0 MANDKIVIHGARAHNLKNIDVTIPRDKMVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLS AYARQFLGQMDKPDVDSIDGLSPAISIDQKTTSKNPRSTVGTVTEINDYLRLLFARVGHP ICPNDHIEITSQSVEQMVDKVLELPERTKIQILAPVVVKKKGQHKKVFEMIQREGYVRMR VDGETYDVSEAPELEKNKKHDIAIVIDRIVVKEGIRSRLFDSFEAALRLAEGYAIVDVIG QEEMLFSEHYACPYCGFTVGELEPRLFSFNAPFGACPDCDGLGVKLEVDKDLVIPDPTKT LREGAIVPWNPISSQYYPQMLEQAATSFGIDMDTPFEELPADQQEIILNGSGEKNFHFHY ENDFGGVRDVEVPFEGILKNIKRRYHETNSDFTRDQMRLYMTELTCRSCQGYRLNPQALA VKINGTHIGEVSELAIKNAVQFFEGVSLSEQETTIARPILKEVEDRLTFLKNVGLDYLTL SRAAGTLSGGEAQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIDSLKKMRDLGNT LIVVEHDEDTMMASDYLIDVGPGAGHLGGEIVAAGTPEEVAKNPHSLTGQYLSGKKVIPV PKERRKGNGKAIKVTGASENNLKNVSVEFPLGEFVAVTGVSGSGKSTLVNQILKKALAQK LNRNSNKPGKHKSITGYEAIEKIVDIDQSPIGRTPRSNPATYTSVFDDIRDLFAQTNEAK VRGYKKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCHGKRYNSETLEVHYKG KNISDILDMTVEDAVEFFKHIPKIHRKLQTIVDVGLGYVTLGQPATTLSGGEAQRMKLAS ELHKNSNGKNFYILDEPTTGLHTDDIARLLLVLERLVEAGNTVLVIEHNLDVIKSADHVI DLGPEGGDGGGTIVATGTPEEVAKVKDSYTGYYLKRVLK >gi|307679227|gb|GL457020.1| GENE 69 78265 - 79059 877 264 aa, chain + ## HITS:1 COG:no KEGG:EF0764 NR:ns ## KEGG: EF0764 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 188 1 188 188 315 100.0 1e-84 MKNKKITTSLLTAGMVLAIGITPFVHSNTMEAATLISQSDHEKVMSFTKKDLKEATGIQL EPATVQAVHQELKQQITWETLGYSTIDAQNIATRFTQNTYQALGILTDIANHSDLQLKVI TINNPYLATAKIGTFKWETVTPEVGGDHETADNELTTPTPTVASLQEIDVEIEYDENEIE FTYEIKSNGTIEATYEDESADLELEGKAAQDKIMTLLDGLSIKTATNEQIKEHITKKLSV NEQVKKIEFEANFTDKTEIEFVLK >gi|307679227|gb|GL457020.1| GENE 70 79225 - 80112 990 295 aa, chain + ## HITS:1 COG:lin2617 KEGG:ns NR:ns ## COG: lin2617 COG1660 # Protein_GI_number: 16801679 # Func_class: R General function prediction only # Function: Predicted P-loop-containing kinase # Organism: Listeria innocua # 3 290 4 290 291 374 63.0 1e-103 MPENLQLVIITGMSGAGKTVAVQSFEDMGYFCIDNLPPSLIPKFWELIKESGKVTKIALV IDLRSRTFFREIQDMLVELENTNFIDTTILFLDATDEELVSRYKETRRAHPMAMDGLVTE GIRKERAMLEEIKADAQLVIDTTDLSPRQLRERLNKELATRETHEFRVEMVSFGFKYGLP IDADIVMDVRFLPNPHYIDELRPLTGMDQPVYDYVMGFPETDEFYTKFIDLLRTVLPGYK KEGKSSVTIAIGCTGGQHRSVALTERVGAELKEEDYHVNITHRDRLKRKETVNRS >gi|307679227|gb|GL457020.1| GENE 71 80112 - 81107 949 331 aa, chain + ## HITS:1 COG:SP1565 KEGG:ns NR:ns ## COG: SP1565 COG0391 # Protein_GI_number: 15901408 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 6 326 1 321 325 428 64.0 1e-120 MKTYRIRKPKIVVVGGGTGLPVILKSLRNQSVDITAVVTVADDGGSSGELRSSINNMTPP GDLRNVLVALSDMPQLYEDIFQYRFDKSDSHFANHAIGNLIIAAVSEMRGSTYEAIQLLS KMMHVDGRIYPSSERPLTLHAVFKDGSVAVGESKIALDRKTIDHVFVTNTHGEEQPRAAR KVVKAIEEADMVVLGPGSLFTSILPNLVITEIGEAIKQTAAEVVYICNIMTQKGETEHFT DTDHVRVLNEHLQAQFVDTVLVNTEKVPENYMDPEIYDEYLVQVKHDFQGLREEGCRVIS TDFLELRDGGVFHDGEKVVEELFRIVFGTKY >gi|307679227|gb|GL457020.1| GENE 72 81141 - 82076 1109 311 aa, chain + ## HITS:1 COG:lin2615 KEGG:ns NR:ns ## COG: lin2615 COG1481 # Protein_GI_number: 16801677 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 307 1 308 323 376 64.0 1e-104 MSFASDVKKELTGLEVHREHAKAELAALIRMNGSLSLVNQQFVLNVQTENAAIARRMYSL LKDHYHAQAELLVRKKMKLKKNNVYIVRLKQDTQKILADLDIMDGVVFNGNVSNEIMGNA QKMRSYLRGAFMASGSVNNPETSRYHLEIFSIYEEHNNDICKMLNYYDLNARTLGRRNGY ICYLKGAEKIADFLTLIGATNSMLKFEDVRIVRDMRNSVNRLVNCETANLNKTIDAASKQ IENIQFIESTVGLTSLPEKLQEIAELRLEYPEVSLKELGEMIPSGAISKSGINHRIRKIN EFAEKLREKSA >gi|307679227|gb|GL457020.1| GENE 73 82310 - 83233 1100 307 aa, chain + ## HITS:1 COG:no KEGG:EF0769 NR:ns ## KEGG: EF0769 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 307 1 307 307 569 100.0 1e-161 MVQRLISANASEIKRMSKEELFQSIKASEGRVILSENVVVHPSVAGDITCAEMSKAYGAD MILLNVFDVNQPIVVAAYEGQYTAETCVPNDEVVHRLKELVGLPIGMNVEPVDENLDLAS TRVSIEPGRKASAATFKKANELGLDFILLTGNPGTGVTNDLIAKNVALAKKHFDGIIIAG KMHSSGVDEPVVSLKSAEQFIEAGADIVLVPAVGTVWGIDDQQVKEVVDFAHSKGKLVMS AIGTSQESAQPEVIQAIGIRNKILGVDIQHIGDANMGLVGIENIKELSDAIRGKRHTVAR MARSINR >gi|307679227|gb|GL457020.1| GENE 74 83347 - 83865 627 172 aa, chain + ## HITS:1 COG:lin1051 KEGG:ns NR:ns ## COG: lin1051 COG1651 # Protein_GI_number: 16800120 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Protein-disulfide isomerase # Organism: Listeria innocua # 1 171 1 171 176 201 56.0 4e-52 MDISVIDATKVNAETGLHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVE RIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQDEWGNLTLEEVATYAEKN LGLKEQKDATLVSAVIAEANAAHIQFVPTIIIGEHIFDESVTEEELRGYIEK >gi|307679227|gb|GL457020.1| GENE 75 83910 - 84503 842 197 aa, chain - ## HITS:1 COG:lin2612 KEGG:ns NR:ns ## COG: lin2612 COG0740 # Protein_GI_number: 16801674 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Listeria innocua # 1 196 1 196 198 316 81.0 2e-86 MNLIPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPIDDNVANSVIAQLLFLDAQDSEKDI YLYINSPGGSVSAGLAIFDTMNFVKADVQTIVLGMAASMGSFLLTAGQKGKRFALPNAEI MIHQPLGGAQGQATEIEIAARHILDTRQRLNSILAERTGQPIEVIERDTDRDNYMTAEQA KEYGLIDEVMENSSALN >gi|307679227|gb|GL457020.1| GENE 76 84699 - 85217 533 172 aa, chain + ## HITS:1 COG:no KEGG:EF0773 NR:ns ## KEGG: EF0773 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 172 1 172 172 308 100.0 5e-83 MFVFIAGMVGVIVGALIVTASAALHSSYKERKEVRYRELEHLVKEIESLNLLNKKVKEIL QKRELYIDRSIEYLSMDDCFISIDDFIYLESFSAQNNFYLPTYLIEEFFKKIAHRKVILT ASEVAEMGGHTYKGGRVILENFSDEILAIIEDKKRKMQRLSNEPLHYFKAIK >gi|307679227|gb|GL457020.1| GENE 77 85237 - 85641 501 134 aa, chain - ## HITS:1 COG:no KEGG:EF0774 NR:ns ## KEGG: EF0774 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 134 1 134 134 240 98.0 2e-62 MNEWPHQLMTLLTPLFELCILGLNVFSIIVLVWGVCLAGKDFIKSERQNQSRFTLTKMNT FIKNFLGSYILLSLEILIAADIIESIVKPTFQDILKLATLVIIRTVISYFLHKEIEDTMT DMEQQEKEPDTQKN >gi|307679227|gb|GL457020.1| GENE 78 86106 - 88079 2314 657 aa, chain + ## HITS:1 COG:no KEGG:EF0775 NR:ns ## KEGG: EF0775 # Name: not_defined # Def: anchor protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 570 1 570 962 998 97.0 0 MFKKATKLLSTMVIVAGTVVGNFSPTLALAEGVVKAGDTEGMTNTVKVKDDSLADCKRIL EGQAAFPVQAGETEPVDLVVVEDASGSFSDNFPHVRQAIDEVVQGLSDQDRVMLASYRGG KQFMFPDGKTKINSADYDMNVRVNTQLTYDKSQFVSGFGDVRTYGGTPTAPGLKLALDTY NQTHGDLTNRKTYFLLVTDGVANTRLDGYLHKTNTNDSINEYPDPRHPLQVSVEYSNDYQ GAAAEVLALNQEITNQGYEMINAYWESVESLSSVNSYFDKYKTEVGPFVKQELQQGSSTP EDFITSQSIDDFTTQLKQIVKDRLAQSTPATASLTIANQFDIQSATATDDAGNDVPVQIN GQTISATSTEGYVGNITIHYEVKENTAIDAATLVSSGTMNQGTIAKEFPEATIPKNDNAH ACDVTPEDPTITKDIENQEHLDLTNREDSFDWHVKTAFGNETSTWQQASLVDDINQLLDI QKVVVTDENGKDVTANGIVTQENNKVTFEMNKQADSYSYLAGHTYTMTITTKIKDGATDE ELAPYIEQGGIPNQADLNFGNEGDVLHSNKPTVTPPAPTPEDPKKPEPKQPLKPKKPLTP TNHQAPTNPVNFGKSASKGIHLPMTNTTVNPLYMIAGLIVLIVAISFGITKNKKRKN >gi|307679227|gb|GL457020.1| GENE 79 88104 - 88487 404 127 aa, chain + ## HITS:1 COG:no KEGG:EF0776 NR:ns ## KEGG: EF0776 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 127 1 127 127 205 99.0 4e-52 MNKKIAFSLLILLLSLLVGFTFIPHKKELSFNEYQEKKHSGETFYVVLKKKNCSDCQDFE KLLQAPKQVYYVELTNKETMKEWSTFIRENKVLHVPSMFKIDNGHLKKIDGEGDANQLFA NYQKITK >gi|307679227|gb|GL457020.1| GENE 80 88661 - 89170 509 169 aa, chain + ## HITS:1 COG:no KEGG:EF0778 NR:ns ## KEGG: EF0778 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 169 1 169 169 159 97.0 4e-38 MIELILLLSVILLGLLIGNKRVDKWLFLKALLLLSVMLSVSILISVAMYLLLTIGVANVI GQRLESLFLLGIVVIISTSLLLYFLLNLTTKKIVLPIALMKIIEYYIQWVLIYVTIYQVI FDQFIVSSEVKNTLQGTIDEPVAIIIVILPSFISIWIAVVLFRIRMEEL >gi|307679227|gb|GL457020.1| GENE 81 89200 - 90987 1661 595 aa, chain + ## HITS:1 COG:L58914_2 KEGG:ns NR:ns ## COG: L58914_2 COG0584 # Protein_GI_number: 15673979 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Lactococcus lactis # 344 583 1 240 249 265 55.0 1e-70 MSAWQTFKNGTRQFFKDILQYLWLFFTLNVLLLLVGGAFSWATSNALKTQGIPYLSFNNL NLLLEKPLALVLLILLLLLFLGAVFYQFTFLLLGIFQIRQDHRFHFKGVTKASFKVLKKQ GARSWLFFFGYFVVIVPFGNLIFQSNLLTKFVIPDFIVEFLSQRIPYLVGLLAFGLLVWY LAIRFIYTLPLMILERKKAGEAVKASWSMTNKRLWFIIRNIAFVTIAVFVSTYVIYVLLY LLQLKLDTLSDTISLLVGILNLTVVQFLQFVSNAWLSVLLINFLYTQLNVQAETTTKVAF DKETKRNKLVTIGMGLGLFTIFGGYIIFNAVYLTGLLESKPLIISHRGVTNSNGVQNTIP AMERTIKFKPDYIEIDVQETKDHQFVVMHDANLQELAGVDGTPQEFTLAELTKMTVKENG QEAPIASFDDYLAKANQAKQKLLVEIKTSKQDSQGALSNFIEKYERPLIKNNHQVQSLDY NVIKAFKKAKSKVKVSFILPYNFTFPETQADLYTMEATTLNDTFILKADQQKKAVYAWTV NDSEVLSKMLFMDVARVITDDLELVNEEVNDFEKNPSYADRILHYIFMLPSVASQ >gi|307679227|gb|GL457020.1| GENE 82 91013 - 91420 359 135 aa, chain + ## HITS:1 COG:no KEGG:EF0780 NR:ns ## KEGG: EF0780 # Name: not_defined # Def: MutT/NUDIX family protein # Organism: E.faecalis # Pathway: not_defined # 1 135 1 135 135 261 99.0 7e-69 MKKEFSRVLLKNQSDEILILKDRPDTWNFPGGKQELGESALECAIREMKEELAVEITELE EIFTGPLVFDSIVWQGHFYFAKQAQGKVTLNEPNKIKGVQFIKRFEEVNFSPGLAPLFDY LACSDYLKLNKTNWK >gi|307679227|gb|GL457020.1| GENE 83 91654 - 91854 366 66 aa, chain + ## HITS:1 COG:L117090 KEGG:ns NR:ns ## COG: L117090 COG1278 # Protein_GI_number: 15672511 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Lactococcus lactis # 1 66 1 66 66 97 81.0 4e-21 MNNGTVKWFNADKGFGFITGEDGNDVFAHFSAIQSDGFKTLDEGQAVTFDTEEGPRGLQA TNIVKA >gi|307679227|gb|GL457020.1| GENE 84 92640 - 93971 1523 443 aa, chain + ## HITS:1 COG:lin2555 KEGG:ns NR:ns ## COG: lin2555 COG1508 # Protein_GI_number: 16801617 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog # Organism: Listeria innocua # 16 442 18 447 447 330 42.0 3e-90 MKFEQRMSQQQKQVQKLAMTQQLQQSIQILQFNTEELAAFVEAKALENPLIDLQVDTQYT TDFPITSRSYTNQDEENNYMNQIPDYHLSLFESLIDQIHLNYRDTYLRTLVLFLVEYIDV NGYLTISLEEAAEKTEASAIQMLDALTLLQQLDPAGVGARNLQECLMLQTERDDTAPNLA YILLEEEFDALVSRKWGPLAKKFGIELAEIQLIFDYIQTLSPAPGNIFDATEELYIRPDL TVRIKEDRIVVISNKAGRPTLNFQENYFKRMQETDDKEVQEYIKDKKNEFEWLERAVNQR GDTILRVGQEIVRRQEAFFLEADRPLKPMTLKEIADALSIHESTVSRAVNGKYLETTFGV FELRSFFSTSILSSEEDGEDVSTTMVKKQLQKLIDQEVKSKPLSDQKLVERLKDSGMEIS RRTVAKYREALGIPSSSKRKRYE >gi|307679227|gb|GL457020.1| GENE 85 94172 - 96049 1743 625 aa, chain + ## HITS:1 COG:L158566 KEGG:ns NR:ns ## COG: L158566 COG1835 # Protein_GI_number: 15674089 # Func_class: I Lipid transport and metabolism # Function: Predicted acyltransferases # Organism: Lactococcus lactis # 10 623 2 600 605 458 41.0 1e-128 MNQTANSKKKRYITGFDGIRTIAVIGVILYHLFPQVMRGGYLGVPIFFVVSGYLINDLLR QEWAENQTIDLKGFYVRRMKRLYPALIVMLLSAVSYITLFQQDLLNNIRSVVASSVFYYN NWWQIFKGFSYFDGFATQSPFVHIWSLAVEAQNYLIWPLLFILLERFVRKRGRIFSLVLI GALISVTLMAVLYVPGADPTRVYYGTDTRVFSILLGSALAYVWPSTRLKEEIPEASKKIL NGAGLSALVLLVLAFLTLSDHTNFVYYGGMFLISLAATVLVAVTAHPGADMNRWLTNPVF TWIGKRSYGIYLYQFPIMIFYEAKIKTLSDHVFLHSLVEIALILVVSELSYRFIEHPLTR LSYKDVWTQFTEFLRKPWDLREKGTMAFMTVISVIAVFGLIVAPANAKSAQQEQLEKNIA KNQQKIEERKKEVQESGTKNSSTSTESSTKPSESQDVLPTQLTPEQVKKAQNLEITTIGD SVILDGASGLQDIFPKMIIDGEVGRQLYSSISLIGELDKKKMLKNTVLVSLGTNGPFTEA QFDEFMKALGNRKVYWINVRVPTRRWQNQVNSLLSQMDKKYDNLTVIDWFNYSNAHDDWF YDDRVHPNVAGGEQYTHFIAEKILQ >gi|307679227|gb|GL457020.1| GENE 86 96265 - 97449 1864 394 aa, chain + ## HITS:1 COG:BS_metK KEGG:ns NR:ns ## COG: BS_metK COG0192 # Protein_GI_number: 16080107 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylmethionine synthetase # Organism: Bacillus subtilis # 4 389 5 394 400 593 77.0 1e-169 MTERHLFTSESVSEGHPDKVADQVSDAILDAILEKDPMARVACETSVTTGLVLVFGEIST IAYVDIQKIVRQTVKDIGYTRAKYGFDGETVAVLVAIDEQSPDIAQGVDAALEVRDQDEK DDIGAGDQGLMFGFAVDETPELMPLPIALSHRLVRRLAELRKEKVLPYLRPDAKSQVTVE YDDQGQPQRVDTIVISTQHDDETTLEQIEKDIKEQVINEVIPHELLDDETKYFINPTGRF VIGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDATKVDRSASYAARYIAKNIVAAGL AKKVEVQLAYAIGVAQPVSISINTFGTSDLPESKLIEAVRKNFDLRPAGIIEMLDLRRPI YKQTAAYGHFGRTDIDLPWEQTDKVEALKASLAE >gi|307679227|gb|GL457020.1| GENE 87 97620 - 99086 1566 488 aa, chain + ## HITS:1 COG:lin0980 KEGG:ns NR:ns ## COG: lin0980 COG0477 # Protein_GI_number: 16800049 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 3 478 2 479 491 389 50.0 1e-108 MAKETNVKLVTVSVFVATFMTAIEGTIVSTAMPTIVGSLHGMEIMNWVFSIYLLTNAMLT PIYGKLADKIGRKPVFMIGIIIFILGSSLCGFAQDMLTLIIARAIQGVGAGAILPVALTI IADMYSLDKRAKILGLNSAAWGIASIFGPLAGGFIVDTVGWHWIFFINVPIGLVLLGLIS IFLVEPKRERTKMPMDILGSVTLMAVLLTLLLGFQMISDNGFTLVTFGCLSLSVLFFVAF VMIEKRAQDPVIDLHLFNQPTFVLVNLIAALISGFLMGIDVYIPMWMQGVLGKSAGIGGL VLAPMSLLWMAGSFIASSFMEKYAMKKVLTIGLSILLVGAIFLVVMPMAVPFWLFFVVSS VLGVGFGITITTTTVTAQSTVEPEKMGVATSFNTLVRTIGQTVMVSIFGVILNAGMFAKL EASALNVDADVMNQLVNPHTANLIPAALLKPLRGILYAGLHNVYLVGAGLVVVALLLNIF AKAQRAKV >gi|307679227|gb|GL457020.1| GENE 88 99125 - 99916 901 263 aa, chain + ## HITS:1 COG:L12887 KEGG:ns NR:ns ## COG: L12887 COG0627 # Protein_GI_number: 15673753 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Lactococcus lactis # 1 261 1 249 258 206 43.0 3e-53 MAFLQANIYSNVLEMEVNVNVILPQETVKKVGTSTQAALTDIPVLYLLHGMGGNHSVWAR RTSIERYVADLGIAVIMPSTDLAWYTDTQYDMNYWTFISEELPKICHQLFPQLSTKREKT FAAGLSMGGYGALKLGLAKPESFAAVASLSGAVSLSSTSFGELLKVRKRSYWEGIFGPLD QIEGSIHDPLYLLQQLVESQTEMPQFYLCCGEQDMLLSANQQMAQALEQAQASYTFETGP GEHDWVFWDEWIQKALAWLPIPK >gi|307679227|gb|GL457020.1| GENE 89 99997 - 100659 743 220 aa, chain - ## HITS:1 COG:no KEGG:EF0787 NR:ns ## KEGG: EF0787 # Name: not_defined # Def: TetR family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 220 1 220 220 404 100.0 1e-111 MEPKLSKDTIIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAIYWYFKNKQALLQSMAEA IEEHFQEPALCGEWYSDLLAFMENYYDLYQQFPCAVAIEIQTVPAYPQRLRHLNQMMGIL REAGFSPEMTHLAVTSLQHLLFGMIMDATEEKQLVSQVLNGDDYLKEQVLHMKQYVSDNE LTYMEESIQFRHSIHQKSAFIQAVKTYLDGLQADNTSSSK >gi|307679227|gb|GL457020.1| GENE 90 100913 - 102628 197 571 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 346 551 21 223 305 80 28 4e-14 MDLIIQHAKKYKGSVVIALLAVIVMVVSALWQPKLLQQVLEAIMNDDSDKMKNLGIQLIA IAGLGLVAGVINTIFSAKVAQGVSADIREATFRKIQTFSFGNIEKFSAGNLVVRLTNDVT QIQNVIMIALQTLFRIPFLFIGSFILAMLTLPQLWWVIVALVIAVILISMLSFSQMGKHF MIIQNLIDKINGIAKENLLGIRVVKSFVQEKNQLSRFTKVSEELTTHNLIVGSLFAVMIP AFMLVANLAVVGSIFFVSNLVKDDPTLIGGVASFMNYLMQIMMAIIIGGMMMMMTSRAAV SIKRIKEVMETEPDVTYKKVPEQELIGSVEFDHVSFRYPGDEEDTLKDISFSIQPGEMIG IVGATGAGKSTLAQLIPRLFDPTEGKIEVGGVDLREVNEHSLRKTVSFVLQKAILFSGTI AQNLRHGKRDASEADMERASGIAQAKEFIEKLAEGYDAPVEERSNNFSGGQKQRLSITRG VIGEPKILILDDSTSALDARSERLVREALDKELKETTTIVIAQKISSVVHADRILVLDNG RLVGEGTHEELAATNPVYQEIYETQKGKEEA >gi|307679227|gb|GL457020.1| GENE 91 102628 - 104397 169 589 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 366 589 21 235 305 69 25 7e-11 MTDLIKASKFFYHYLKRYKVSFLFIFLAIFAATYLQVKAPQFVGEAIQELAKYAVNVMQG KDDKSAFVSVIWKLLIFYVLTSAASFIYSILFTQVVGKSTNRMRIGLFNKLEKLTIRFFD SHQDGEILSRFTSDLDNIQNSLNQALLQVLTNIALLVGVLIMMFRQNVELAWATIASTPI AILIAVFVISKARKYVDLQQDEVGKLNGYMDEKISGQRVIITNGLQEETIDGFLEQNEKV RAATYKGQVYSGLLFPMMQGMSLVNTAIVIFFGGWLAINGSVDRAAALGLVVMFVQYSQQ YYQPLMQISSGYSMIQLAVTGARRLNEMFDEPDEIRPENGGKLEEINKAVALNHVVFGYN PETPVLKDVSIHVDKGEMVALVGPTGSGKTTIMNLMNRFYDVNEGAVTFDGVDIREMDLD SLRSHVGIVLQESVLFSGTIRENIAFGKPEATDEEIVQAAKQANIHEFIVNLEQGYDTEI TEENNLFSTGQKQLVSIARTIITNPELLILDEATSNVDTVTEAKIQKAMDEAIKGRTSFV IAHRLKTILNADRIIVLRDGEVIEEGNHHELVEQDGFYAELYKNQFVFE >gi|307679227|gb|GL457020.1| GENE 92 104807 - 105412 636 201 aa, chain + ## HITS:1 COG:lin2558 KEGG:ns NR:ns ## COG: lin2558 COG1309 # Protein_GI_number: 16801620 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 1 198 1 199 202 145 39.0 4e-35 MEKPNKRKADLERTRQIILSVASELFMTKGFKNTSTREIALKANITQPNLYHHFKNKKEL YLAVIEELTSRVKEELVPIVSGNASVEEKLYQLIKVLLDEHPTNLFLMLNDMFQEMGPDY NRTLYQIFKKTYINNIAAIFESEPETNCLQEGISVDDATRFILYNVSALLSIEKTYQRKT VDDDVKKFIQFMLHGVLKSHK >gi|307679227|gb|GL457020.1| GENE 93 105551 - 106630 1272 359 aa, chain + ## HITS:1 COG:L130944 KEGG:ns NR:ns ## COG: L130944 COG0577 # Protein_GI_number: 15674237 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Lactococcus lactis # 1 358 2 357 357 285 47.0 8e-77 MFLGFNEMKYSKGRYVLVVLVMVLIAWLIFILSGLANGLAQGNRLAVDQWQANQVVLSKE ANSNLNVSVLDENVKETISGGKIAPIGQQSLAIRPADDKKAELTNVSLFGIEKESFLMPK VIEGNAFTDKNQVIASETLKNQGFKIGDKLTAGKYDEQLEIVGFISKSSYNIVPVIYTSL DTWRSIKYGDNPAMAKMVNGFIVRSKDNAEVKTTNKDSQVLSISDFIEKLPGYSAQNLTL DGMIYFLIVIAAFIIGIFIFVMTLQKTAMFGVLKVQGVPTSFLAKAVMLQTALLAVLGVA IGLALTGITVLFLPEAMPYATNGPRMILFSVLLILSALIGGAFSIRTIAKIDPLIAIGG >gi|307679227|gb|GL457020.1| GENE 94 106635 - 107303 256 222 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 201 1 199 223 103 34 6e-21 MANVLEMKNIYKKYGEKHTEVIALKELSFAVQPGEFVAVIGPSGSGKSTFLTIAAGLQAP TSGEVIVGGQSLNKLTKKQRLAQRFQKIGFILQSSNLVPFLTVEDQFHLIEKVDKSRKNS ELKEQLLETLGLKELRNSYPRDLSGGERQRVAIACALYHEPDVILADEPTASLDTEKAFD VVQLLAKEAKEKDKGIIMVTHDERLLKYCDRVVRIRDGELTE >gi|307679227|gb|GL457020.1| GENE 95 107361 - 107924 643 187 aa, chain - ## HITS:1 COG:BH3285 KEGG:ns NR:ns ## COG: BH3285 COG0500 # Protein_GI_number: 15615847 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Bacillus halodurans # 6 187 7 190 190 158 45.0 6e-39 MLQTALHFSHQLLKEVVEPGDFVIDATMGNGHDTAFLAELVGPSGEVFAFDIQKEALINT EQKLTELNLLPQTTLFPLGHEHLHAVLDEETEITAAIFNLGYLPKSNKEIITKPTTTKQA LDGLLPHLVKGSRIILVVYYGHEGGSEELDLVTNYTQALPQDVYSVLRYEFINQKNQPPV LFCIEKK >gi|307679227|gb|GL457020.1| GENE 96 107924 - 108892 976 322 aa, chain - ## HITS:1 COG:L142355 KEGG:ns NR:ns ## COG: L142355 COG1242 # Protein_GI_number: 15674248 # Func_class: R General function prediction only # Function: Predicted Fe-S oxidoreductase # Organism: Lactococcus lactis # 12 310 3 301 313 488 74.0 1e-138 MQIFPYSDDPNKRYHTWNYALRQQFGEKIFKVPIDGGFDCPNRDGTVAKGGCTFCSVSGS GDMIVAPSDPLPLQFQKEIQLMHQKWPTVDQYIVYFQNFTNTHAPVDVIRHRFEQVVNEK GVVGLSIGTRPDCLPDEVVNYLAELNERFYLWVELGLQTTFEETSAAINRAHDYQTYLDG VAKLRKHGIRVCTHLINGLPGETPAMMRENVRRTIQDSDIQGIKLHLLHLMTNTKMMRDY NEGRLQLMSKEAYVSVICDQLEMIPPEIVIHRLTGDAPFETIIGPMWSLKKWEVLNAIDA EMKRRNSYQGKYTVISGKEVFN >gi|307679227|gb|GL457020.1| GENE 97 108908 - 109558 612 216 aa, chain - ## HITS:1 COG:SP0489 KEGG:ns NR:ns ## COG: SP0489 COG0671 # Protein_GI_number: 15900403 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 216 1 216 216 132 38.0 6e-31 MKNKLYYQFAGSCFLLVFMFLGYVVRFYPTWLKGFDQTITSFVRRPFPQLNNFFIWYTKF ANSLTIIILAIVVIALFIVWKYYAEALWLFINTALIAGVGNSLLKLFFMRQRPTLEHLVT EHTYSFPSGHAVGSTLFYGTILLILPIFIKNKTVRLCVQILLGIGIFMIGVSRIYLGVHF PSDILGGFCLGLAWLLLSYPIYLEKRFVWRFQSKQR >gi|307679227|gb|GL457020.1| GENE 98 109727 - 110752 1029 341 aa, chain - ## HITS:1 COG:no KEGG:EF0797 NR:ns ## KEGG: EF0797 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 341 1 341 341 586 98.0 1e-166 MKKTTGILLSIAVLAMLIGGSGAVYFYKQAEKSVTPLKESYTLKNKQAGEELHLSLKGKG PYTIYKTDSNKMGLRSPNNAFYSKAEGTLDVKEEKNKITATINTTRTQNQPELSFFNIGI FSDFTPNVSVQIPNNVKKLVIDGSTHSPVSLNAFNVDELTTNLPNSYVSLSGVKAKKMTL NSSDGIYLSADTSAKTATVETTDGDITLDSAYFDEIKNTTISGDIRVQNTRGNIQATTTD GDISVYDFKGEANFSSENGDFSLDMPAVPKKLTVALVHGDIYVNSGEILRNISIKGESKL GDVQLLNKERTSYKNGRADTEFNLSSEFGDITVDTPDDDNQ >gi|307679227|gb|GL457020.1| GENE 99 110752 - 111411 615 219 aa, chain - ## HITS:1 COG:no KEGG:EF0798 NR:ns ## KEGG: EF0798 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 219 1 219 219 431 99.0 1e-120 MNKEHFIIELKIYLKALNPKDQAIILAKYKALFDARVAEGETEEQVAKSLGKPRVIAEEI LKEQGIELTERKIENNGWQEIPAATPAYDHPYEEESEFYYDNDSPYYQRPQHRPLTRFFQ VLGIFCLNFFFMFWVILGIALIYVGCGIAGAATLFSPIYGIYSVITQANAASFFQLSMSL FLFGASIIGWLLFLPILKFSAHVFKRYFQWNIAVLRGDI >gi|307679227|gb|GL457020.1| GENE 100 111727 - 112956 1283 409 aa, chain + ## HITS:1 COG:L68758_1 KEGG:ns NR:ns ## COG: L68758_1 COG1705 # Protein_GI_number: 15672254 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Lactococcus lactis # 175 344 57 225 242 167 57.0 3e-41 MKKESMSRIERRKAQQRKKTPVQWKKSTTLFSSALIVSSVGTPVALLPVTAEATEEQPTN AEVAQAPTTETGLVETPTTETTPGTTEQPTTDSSTTTESTTESSKETPTTPSTEQPTVDS TTPVESGTTDSSVAEIAPVAPSTTESEAAPAVTPDDEVKVPEARVASAQTFSALSPTQSP SEFIAELARCAQPIAQANDLYASVMMAQAIVESGWGASTLSKAPNYNLFGIKGSYNGQSV YMDTWEYLNGKWLVKKEPFRKYPSYMESFQDNAHVLKTTSFQAGVYYYAGAWKSNTSSYR DATAWLTGRYATDPSYNAKLNNVITAYNLTQYDTPSSGGNTGGGIVNPGTGGSNNQSGTN TYYTVKSGDTLNKIAAQYGVSVANLRSWNGISGDLIFVGPPPQRTRTIL >gi|307679227|gb|GL457020.1| GENE 101 112971 - 113870 883 299 aa, chain + ## HITS:1 COG:lin2838_2 KEGG:ns NR:ns ## COG: lin2838_2 COG1388 # Protein_GI_number: 16801898 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: FOG: LysM repeat # Organism: Listeria innocua # 3 237 8 254 254 134 36.0 2e-31 MNKIAAQYGVSVANLRSWNGISGDLIFVGQKLIVKKGASGNTGGSNNGGSNNNQSGTNTY YTIKSGDTLNKIAAQYGVSVANLRSWNGISGDLIFAGQKIIVKKGTSGNTGGSSNGSSNN NQSGTNTYYTIKSGDTLNKISAQFGVSVANLQAWNNISGSLIFAGQKIIVKKGANSGSTN TNKPTNNGGGATTSYTIKSGDTLNKISAQFGVSVANLRSWNGIKGDLIFAGQTIIVKKGA SAGGNASSTNSASGKRHTVKSGDSLWGLSMQYGISIQKIKQLNGLSGDTIYIGQTLKVG >gi|307679227|gb|GL457020.1| GENE 102 114274 - 116688 3135 804 aa, chain + ## HITS:1 COG:lin1769 KEGG:ns NR:ns ## COG: lin1769 COG0495 # Protein_GI_number: 16800837 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Leucyl-tRNA synthetase # Organism: Listeria innocua # 1 804 1 803 803 1271 75.0 0 MSYNHKEIEKKWQKYWAKNNCFNTLDDPNKEKFYALDMFPYPSGQGLHVGHPEGYTATDI LSRMKRAQGYNVLHPMGWDAFGLPAEQYALDTGNDPAEFTKKNIETFRRQINSLGFSYDW NREINTTDPEYYKWTQWIFTKLYEKGLAYEAEVAVNWVPELGTVISNEEVIDGKSERGGY DVVRRPMRQWMLKITAYADRLLEDLELVDWPESIKDMQRNWIGRSEGANVTFKVAGTEES FTVFTTRPDTLFGATYTVLAPELELVKKITTPEQTAAVEAYIEETSKKSDLNRTDLAKEK TGVFTGAYAINPVNGQEIPIWIGDYVLASYGTGAIMAVPAHDERDYEFAKTFGIDILPVI AGGDITTEAYTGDGPHINSDFLNGLNKAEAIAKMNEWLEENHVGKKEVSYRLRDWLFSRQ RYWGEPIPVIHWEDGTTTTVPESELPLRLPVTSDIRPSGTGESPLANIDEWVNVVDPETG MKGKRETNTMPQWAGSSWYYLRFIDPHNKNEIADFEKLKRWLPVDIYIGGAEHAVLHLLY ARFWHKFLYDIGVVPTKEPFQKLYNQGMILGENNEKMSKSRGNVVNPDDVVAKYGADTLR LYEMFMGPLDASIAWNENGLEGSRKFLDRVWRLIVDEEGKMRDRITTINDGRLTKVYHQT VKKVTEDMANLHFNTAISQLMVFVNEANKVDALPYEYVEGFVQLLAPIAPHIGEELWQIL GNEESLTYVPWPTYDEAALVEDEVEVVFQVNGKLRGKQNVARGLSKEELEQIAMNHEAVK EFIEGKTVRKVIAVPDKLVNIVAN >gi|307679227|gb|GL457020.1| GENE 103 116744 - 116968 248 74 aa, chain - ## HITS:1 COG:no KEGG:EF0802 NR:ns ## KEGG: EF0802 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 74 23 96 96 105 98.0 4e-22 MKKYRISLFLGLISLLLFMISILVGSTLSSDGLLKEPAFFCTPLGYFFLFIALLSVITIT CKEHMNQKGKTKQP >gi|307679227|gb|GL457020.1| GENE 104 117065 - 117508 444 147 aa, chain - ## HITS:1 COG:no KEGG:EF0803 NR:ns ## KEGG: EF0803 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 147 1 147 147 218 98.0 7e-56 MPTNKKEVMLFTTLMCFLMVFGMSTYNLLLHGEFSLYALSKGLLPGFIVAFILDVFIVGV LAKKIAFSLPFNKEKRLLLILTISSLMIIGMVTCMSLFGLLMEGQTLSLSAYFQAWGLNF IVALPYQLLIVGPFSRMILTNYQQRQT >gi|307679227|gb|GL457020.1| GENE 105 117684 - 118514 860 276 aa, chain - ## HITS:1 COG:lin1849 KEGG:ns NR:ns ## COG: lin1849 COG0834 # Protein_GI_number: 16800916 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Listeria innocua # 4 268 2 266 271 288 54.0 9e-78 MKKKYSLALLVICCSLLLFAGCGKRKSNEDQWTRINEEKRIIIGLDDSFVPMGFQDKSGK IVGFDVDLAKAVFKLYGISVDFQPIDWSMKETELQNQTIDLIWNGYTKTSERAEKVQFTQ PYMTNDQVLVSLKVKNIATASDMQGKILGVQNGSSGYDGFESQPDVLKKFVKDQTPILYD GFNEAFLDLKSGRIDGLLIDRVYANYYLSHEDNLKNYTISHVGYDNEDFAVGVRKSDNQL VQKINTAFETLRKDGTLSKISQKWFGEDVTNNTKIN >gi|307679227|gb|GL457020.1| GENE 106 118528 - 119163 388 211 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 208 1 213 245 154 38 3e-36 MLTIKNLTKHFDNRTIIDHLNLEIPDGKILTIVGPSGGGKTTLLRCLAGLETIDSGELLL DGVPFNPAEMDNADQVVGVVFQDFQLFPHLSVLENITLAPTLVLKEEKAKSQQEALELLE KLGLAGKEKLYPYQLSGGQKQRVALARALAMKPKVLGYDEPTSALDPALRQQVEEVILDL RKQGMTQIVVTHDMAFAEKIADNLLTVAPVQ >gi|307679227|gb|GL457020.1| GENE 107 119176 - 119817 713 213 aa, chain - ## HITS:1 COG:lin1851 KEGG:ns NR:ns ## COG: lin1851 COG0765 # Protein_GI_number: 16800918 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Listeria innocua # 1 213 1 213 213 237 67.0 1e-62 MDYILEILPALVSGAGMTLKVFFFTLLGSIPLGIIIAFILQSSFKPLRYLINLYIWLMRG TPLLLQLIFVFYGLPLIGIVFERYDAALFAFILNYAAYFAEIFRGGIQAIPQGQYEAAKV LRLTRFQTVTRIILPQVVKIVLPSVGNEIINLVKDTSLIYVLGLGDLLRAGKIAMSRDVT LVPLALVGVIYLLFTAILTVASKKIEKFYQYYK >gi|307679227|gb|GL457020.1| GENE 108 120652 - 122283 1792 543 aa, chain + ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 1 542 1 549 549 388 39.0 1e-107 MKQKKWLIGLVALGLVLAACGSGGSKTTSNEAATQKINVASGGELSTLDSAHYTDVYSSD MIGQVVEGLYRQDKNGDPELAMAKAEPQVSEDGLVYTFKLREAKWTNGDPVKAGDFVVAF RNVVDPAYGSSSSNQMDIFKNGRAVREGQATMEEFGVKAIDDQTLELTLENSIPYLAQVL VGTPFMPKNEAFAKEKGTAYGTSADNFVGNGPFVISGWDGNSETWKLKKNDHYWDKEHVK LNEIDVQVVKEIGTGANLFDNGDLDYTVLADTYALQYKESKQAHFVPKAMVGYLSPNHRR EITGNEHVRKAFLQAIDKETFAKEILGDGSTALNGFVPANFAKNPDTGEDFRKENGDLLP YNIKEAQANWNKAKEELGKDKIELELISADSAIAKKTIEFVQGQLQQNLPGLTIKLKSLP LQNRLDLQTAGNYDLAFGTWTPDYADPFNFLEFYDSKSGLNTSGYNDSAYDAGLQKVRKD YANEPEKRWNELLSLEKTLIEKDAGVLPLFQGAIGYLKSDRLQGLQVFSFGRTVSYRLAY VEE >gi|307679227|gb|GL457020.1| GENE 109 122390 - 122638 338 82 aa, chain + ## HITS:1 COG:SA0360 KEGG:ns NR:ns ## COG: SA0360 COG2261 # Protein_GI_number: 15926075 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 78 1 78 83 57 56.0 7e-09 MFSFLWALIVGGIIGAIAGAILGKDVPGGIIGNIIVGFLGSWVASLLLPSLGPVIGGFPI ISALLGAIICIAIYSFIVNRKA >gi|307679227|gb|GL457020.1| GENE 110 122704 - 123027 463 107 aa, chain - ## HITS:1 COG:no KEGG:EF0819 NR:ns ## KEGG: EF0819 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 107 1 107 107 201 100.0 7e-51 MFERFDSDRSRYASLGVVSSLPSGLIDSIWLIIDLNLKGVIPLNDLLHFDLLNNNGKVTV HFSQENSSVEMAIDLPFSYSTAYPSRIFAFDDGHRETILLPAEMLES >gi|307679227|gb|GL457020.1| GENE 111 123279 - 123887 1004 202 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29375409|ref|NP_814563.1| 50S ribosomal protein L25/general stress protein Ctc [Enterococcus faecalis V583] # 1 202 1 202 202 391 100 1e-107 MSVQLEVKERAIRPRSLRNQLRHEGKVPAIVYGYQIESTPIYFEEKDLSKILREHGANTV IKMTVDGKNINTLMSKAQLDTFTGQMLHVEFLSVNMKETTEVEAEVQLIGESAGVKAGGT LAQNLYTVLVAATPDKLPESIEVDITNLEIGDALTIADLPEHKDYEILTDPEEQLVAIVE AQTAPEEEEGTAAETTEPELAE >gi|307679227|gb|GL457020.1| GENE 112 124218 - 125000 675 260 aa, chain + ## HITS:1 COG:SPy1398 KEGG:ns NR:ns ## COG: SPy1398 COG1187 # Protein_GI_number: 15675319 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Streptococcus pyogenes M1 GAS # 1 194 1 194 194 198 53.0 8e-51 MRLDKLLEELQFGSRKTVKRIIRGKQVTVDGIVTLNESQNVDAQLQMIKVKGQLISHKTH VYYMLNKPKGVVSAVSDASKKTVIDLIAPQDRRPGLYPVGRLDGDTEGLLLLTDNGQLGY QLIRPNKEVAKCYEVKVNGLVSAEDCAKFKDGIVLQGGIQCKPAKITVLAATETESHVFL TIQEGKFHQVKKMFLSVGKKVTALKRQTMGPLRLDPQLPLGAYRSLTREELQLLLPYFFI EKQQTSKALPSNLKREEERK >gi|307679227|gb|GL457020.1| GENE 113 124997 - 125677 589 226 aa, chain + ## HITS:1 COG:BS_yfnB KEGG:ns NR:ns ## COG: BS_yfnB COG1011 # Protein_GI_number: 16077800 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Bacillus subtilis # 2 224 5 227 235 247 54.0 1e-65 MKTLLFDVDDTLLDFKLAEKKALHALFEEENVPFTSEVESTYHRINQGLWRSFEEGKITK DVLLDTRFGLLFDAFNREVDSVKMGENYREYLSQGHDLLGNSQRILEKLAPHYDLYIVTN GVAKTQYRRLEDSKLMPYFKDIFVSEEVGYQKPMKEYFDFVFERIPNFSREKTMIIGDSL HSDIQGGQQAKIQTVWLNPTSAPATPTIQPNYTIQQLDELLPILGH >gi|307679227|gb|GL457020.1| GENE 114 125712 - 126167 496 151 aa, chain - ## HITS:1 COG:BS_yvbK KEGG:ns NR:ns ## COG: BS_yvbK COG0454 # Protein_GI_number: 16080442 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 15 150 19 155 155 135 52.0 3e-32 MIKKVKKEALTTAHYALLYEADPSKKMVADYITRGICFDYQTEELQGILVLLPTHPRTLE IVNIAVSEESRGRGIGQELLHFAIDFAKKEKYDYLEIGTGSTGFQQLYLYQKVGFRMTHI EPDFFIHHYDEPIMENGLPLKDMVRLRLHLS >gi|307679227|gb|GL457020.1| GENE 115 126250 - 126345 85 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKSLGKGLAFFRVFIIIVKDNEVFEKKEVYT >gi|307679227|gb|GL457020.1| GENE 116 126342 - 126971 831 209 aa, chain + ## HITS:1 COG:BH1275 KEGG:ns NR:ns ## COG: BH1275 COG0572 # Protein_GI_number: 15613838 # Func_class: F Nucleotide transport and metabolism # Function: Uridine kinase # Organism: Bacillus halodurans # 5 206 4 205 211 278 70.0 6e-75 MKDSQPIIIGVTGGSGSGKTSVSRAIFNNFPDHSIMMLEQDSYYKDQSHLSFEERLNTNY DHPFAFDTDLLIQHVEQLLNYQAIEKPVYDYVAHTRSTETVIQEPKEVIILEGILILEDR RLRDLMDIKVYVDTDDDIRIIRRIKRDMEERGRTLDSVIEQYLTVVKPMYHQFIEPTKRY ADIIVPEGGENHVAIDLINTKVDSILTKM >gi|307679227|gb|GL457020.1| GENE 117 127140 - 127481 337 113 aa, chain + ## HITS:1 COG:lin0887 KEGG:ns NR:ns ## COG: lin0887 COG2337 # Protein_GI_number: 16799960 # Func_class: T Signal transduction mechanisms # Function: Growth inhibitor # Organism: Listeria innocua # 1 112 2 112 115 119 59.0 1e-27 MIKRGEVFYANLSPVVGSEQGGIRPVLIIQNNKGNLFSPTLIVAPITRNVSKRLQPTQVL IEIPHNECRTPSLILLEQIRTLDKERMLHKVCQLSREEMEQVNQALKVSVGIR >gi|307679227|gb|GL457020.1| GENE 118 127583 - 128548 1033 321 aa, chain + ## HITS:1 COG:L194226 KEGG:ns NR:ns ## COG: L194226 COG0673 # Protein_GI_number: 15673536 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Lactococcus lactis # 4 321 2 319 324 245 42.0 9e-65 MDKIRYGIMSTAQIVPRFVSGLRESAQAEVRGIASRRLENAQKMSKELAIPVAYGSYEEL CKDETIDIIYIPTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLM EAQKSVFLPITQKVKATIQEGRLGEILWVQSVTAYPNVDHIPWFYSREAGGGALHGSGSY PLQYLQYVLGKEIQAVTGTATYQQGATDSQCNLALKFAEGTLGNIFINVGLKIPSEMTIC GTKGQIVIPNFWKTDCAYYTDAQGNTVKWSEQFTSEFTYEINHVNQCLQDKKLTSPVMTK ELTIATVKIVESFYQEWFDNE >gi|307679227|gb|GL457020.1| GENE 119 128918 - 130837 1604 639 aa, chain + ## HITS:1 COG:BS_licR_1 KEGG:ns NR:ns ## COG: BS_licR_1 COG3711 # Protein_GI_number: 16080911 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus subtilis # 4 493 1 486 499 144 25.0 8e-34 MTVLLSKRAINILLMLLDLEGSITTQELAENFTVSVRTIKYDLEDIRAWFEQHDETLYSK RNKGIWLDLPDSKRLLLKNEIIDVDRFETYPDQKRRVNVLIFQLLSVKGYLTAQQLADEL LVSRNTIVSDLEQVERLLQAYDLTLIRQARQGFTISGEESNVRLLMEFITQKELTEYDIY QIMNYVTKTKGAEKIPKIKFGSGTLFQGCYRSALKKMRNLINPLDQNQFDYAEILSITLR VAIAAARMQMAHTIGTYRVLSQKTRFEQRNEVPLLLLQEVFERYDLPLLADEYFYIYSDL FGTHQRQDMVQLTKQVIESVSKELNYPFVNDRQLFTNLFAHLSLRFTKKHLFINEYNPFS EEIKGKHPALFLAIQSACKQLIQRSVLLVNDSFCAYIALHFLAAQERQQQEAKVVRIVYV CSTGLGVTSLIEQKILEEVPNVELAGFASVLNATEVIQAEKPDLVLSIFPIEEMTYPFIK VSPLLTDTDLSLIREEVDKILLGKRQGKGTARSTKSDVIEKNERIQSQDLLVKAYIIYEE LKRMFQTKLLSEYQEAFLLHVLLMTHRITFNKQYEEIPCNREVSHERQEEIRQIECLFAK NELPVNHAEISALLNYLEQPKEEEDGTSNGSTGDHSTKC >gi|307679227|gb|GL457020.1| GENE 120 130803 - 131126 542 107 aa, chain + ## HITS:1 COG:no KEGG:EF0829 NR:ns ## KEGG: EF0829 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 107 5 111 111 160 99.0 1e-38 MEAQEIIRQSAEPEKLQSIIKQTSARLAEAQIEPTELQWTILINHLNEMLNRSREGTTLA GVDRTLFTELTPETLKIAQETTEAIGQLSEDEWYVLAVHFEVAKQNN >gi|307679227|gb|GL457020.1| GENE 121 131141 - 131497 587 118 aa, chain + ## HITS:1 COG:no KEGG:EF0830 NR:ns ## KEGG: EF0830 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 118 1 118 118 194 100.0 7e-49 MITVVIADRLGKGQNVAKGVEQAGGRAVVVPGMGADMRLGDVMQQEKADLGISFCGSGGA GALTAATKYGYPERHGMRSIEEGVTAINDGKTVLGFGFMDQEELGKRVTEAFIKKHGA >gi|307679227|gb|GL457020.1| GENE 122 131528 - 131884 422 118 aa, chain + ## HITS:1 COG:no KEGG:EF0831 NR:ns ## KEGG: EF0831 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 118 1 118 118 184 100.0 8e-46 MDATKRSTQTVIVSGKGNKKNEAFASALNDVSKKVLKETTEVLIRIEPKEVTIRQAKEQV YTEKFLFFFFPRKRVIYHVELAVEVEIQAIAVEEVDFLTETIKEPNAVVVPFLSKRGV >gi|307679227|gb|GL457020.1| GENE 123 131900 - 132679 1073 259 aa, chain + ## HITS:1 COG:no KEGG:EF0832 NR:ns ## KEGG: EF0832 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 259 1 259 259 436 99.0 1e-121 MEFVIILLKSLLIGGLLGFAAGAGAARMFHAPQTQGLGAFRTLGEMNAAQGDPASHFSFG LGFFFNAWASAVGAGAFTQDVTHRIVPNWAAAILLVKDKDVTKTMHNPKKMGIVGAFVGM ATVAFLNSTAAAIPESLQVTAVAVLVPAATILINTVMPVLFWLAALDAGKRTGFWGTLFG GLSQLVMGNAVPGVVLGILIGKGVDDLGWTRMTRGMLGAIILLFILSGFFRGFDLEMIES FRLSIPQWLNNLHNVFTVK >gi|307679227|gb|GL457020.1| GENE 124 132699 - 133394 1107 231 aa, chain + ## HITS:1 COG:no KEGG:EF0833 NR:ns ## KEGG: EF0833 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 231 1 231 231 316 99.0 5e-85 MEQQEKNEWAQQEQEIQEGLKGKSFWYADWGFPILVGIMSAAIFAGTHMYVVYGVGAFNE VSIVAMLKAGLDGGSYGAAAAFGASFLFARILEGSLIGILDLGGSILTGIGIGVPAIFLS MGIKAPVENFGLALLTGALLGLAVGGVIVLIRKFTINQGNSTFGADVMMGAGNASGRFLG PLIILSAAGASIPIGIGATLGALGFYIWKKPIAGGAILGAMIFGAIFPVSL >gi|307679227|gb|GL457020.1| GENE 125 133525 - 134838 1416 437 aa, chain + ## HITS:1 COG:BS_ywbA KEGG:ns NR:ns ## COG: BS_ywbA COG1455 # Protein_GI_number: 16080890 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Bacillus subtilis # 1 437 1 442 444 295 42.0 2e-79 MNGFVQWMEVKLMPIANKFGSQRHMTAIRKGLIATMPLTIVGSFFTIFQNIPIEAYTKLI EPYQAILDIPSRYTMGLLALYATFGIASSLAKSYKLDSLTCGILALMAFLVTAAPPTRVF EDVDNVITAGRYINLANLGSASLFGAIVTALLSVEIYRFFIEKDIMIKMPDGVPPEVSNS FIALIPGAVILLLFWVIRHVIGFDLNGFLSTLLMPLKGILAGNSLFGGLLTVFLICFFWV LGIHGPAIMGPVIRPFWDMSIAENLEAFTNGANVHQLPNIFTEQFLQWFIWIGGAGTTLS LVVLMMFSKSTYLKSLGRLSFLPGLFNINEPVIFGTPIVMNPILGIPFIVAPLITTTLSY FLTVANIIPMMAARLAFAIPAPIAAWMSTNWSFSAAVLVIVNFLITMAIYYPFFKVYEKQ QLDKEAEELAAEQAAKN >gi|307679227|gb|GL457020.1| GENE 126 134915 - 135163 146 82 aa, chain + ## HITS:1 COG:no KEGG:EF0835 NR:ns ## KEGG: EF0835 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 11 82 11 82 82 111 97.0 1e-23 MIIWFIFFFIVSQIIIEKGQLPTVVYQLSLVKTLVFTAVCITLSMIIGGFLNQPVLLVGS TTILCSSVIAWKFRNKFENSGV >gi|307679227|gb|GL457020.1| GENE 127 135172 - 136260 1293 362 aa, chain + ## HITS:1 COG:L176316 KEGG:ns NR:ns ## COG: L176316 COG3589 # Protein_GI_number: 15672155 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 5 361 4 361 364 331 46.0 2e-90 MKRALGVSVYPDHSDINQDKAYLKKASECGFTRIFMSMLEVTDGKEAVQKKFKELISYAK NLGFETILDVVPSIFDELEISYDDLTFFSELGADGIRLDTGFDGNKEAMLTFNPFGVAIE LNMSNDVAYLDNILTYEANRPFLYGCHNFYPQAATALPYDFFEKCSIRFKKEGIRTAAFI SSQVGEIGPWDVNDGLPTLEMHRQLPVTVQAKHLFATNLIDDVVIGNAYASNEELEALGQ LNRYQTELTIVFEEATSEIEKEIVTKNQHFRRGDITQQMIRSTEVRKKYKNEANPPHDNQ AMLQPGDVVVGNDAFGKYKNELQVVLEPHQDSRKNRVGRIIEEELVLLEFIKPWTKFRFI EK >gi|307679227|gb|GL457020.1| GENE 128 136269 - 137378 1277 369 aa, chain + ## HITS:1 COG:STM4445 KEGG:ns NR:ns ## COG: STM4445 COG3964 # Protein_GI_number: 16767691 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Salmonella typhimurium LT2 # 3 367 2 364 377 339 45.0 5e-93 MDYDLLIKNGQTVDGMPVEIAIKEKKIAAVAATISGSAKETIHLEPGTYVSAGWIDDHVH CFEKMALYYDYPDEIGVKKGVTTVIDAGTTGAENIHEFYDLAQQAKTNVFGLVNISKWGI VAQDELADLSKVQASLVKKAIQELPDFVVGIKARMSRTVIGDNGITPLELAKQIQQENQE IPLMVHIGSAPPHLDEILTLMEKGDVLTHCFNGKENGILDQATDRIKDFAWQAYNKGVVF DIGHGTDSFNFHVAETALREGMKAASISTDIYIRNRENGPVYDLATTMEKLRVVGYDWPE IIEKVTKAPAENFHLAQKGTLEIGKDADLTIFTIQAEEKTLTDSNGLTRVAKEQIRPIKT IIGGQIYDN >gi|307679227|gb|GL457020.1| GENE 129 137368 - 137713 341 115 aa, chain + ## HITS:1 COG:STM4446 KEGG:ns NR:ns ## COG: STM4446 COG1921 # Protein_GI_number: 16767692 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine synthase [seryl-tRNASer selenium transferase] # Organism: Salmonella typhimurium LT2 # 5 115 5 115 372 100 50.0 6e-22 MTISYEKFHLKEVINASGKMTILGVSKVSEAVLAAQRFGGEHFFEMSELSVQTGAFLANL LKVEDAQIVSSASAGIAQSVAALIGKGSLYHAYHPYSEKIEQREIVLPKGHNVDY Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:39:42 2011 Seq name: gi|307679226|gb|GL457021.1| Enterococcus faecalis TX2141 genomic scaffold Scfld88, whole genome shotgun sequence Length of sequence - 52844 bp Number of predicted genes - 46, with homology - 44 Number of transcription units - 25, operones - 10 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 10 - 126 221 ## 2 1 Op 2 . - CDS 123 - 1706 1596 ## COG5298 Uncharacterized protein conserved in bacteria 3 1 Op 3 . - CDS 1696 - 3216 980 ## EF0885 hypothetical protein 4 1 Op 4 . - CDS 3230 - 4333 1076 ## EF0884 hypothetical protein - Prom 4423 - 4482 4.8 - Term 4480 - 4518 -0.9 5 2 Op 1 8/0.000 - CDS 4520 - 5449 1096 ## COG1484 DNA replication protein 6 2 Op 2 6/0.000 - CDS 5449 - 6858 1515 ## COG3611 Replication initiation/membrane attachment protein 7 2 Op 3 . - CDS 6874 - 7356 491 ## COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains - Prom 7376 - 7435 2.2 8 3 Op 1 . - CDS 7444 - 7509 60 ## 9 3 Op 2 4/0.000 - CDS 7536 - 8135 733 ## COG0237 Dephospho-CoA kinase 10 3 Op 3 4/0.000 - CDS 8132 - 8974 906 ## COG0266 Formamidopyrimidine-DNA glycosylase - Term 8986 - 9031 4.1 11 3 Op 4 . - CDS 9074 - 11722 3300 ## COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains - Prom 11754 - 11813 7.5 - Term 11807 - 11860 11.6 12 4 Op 1 . - CDS 11910 - 12821 1069 ## COG4989 Predicted oxidoreductase 13 4 Op 2 . - CDS 12890 - 13588 365 ## EF0876 hypothetical protein 14 4 Op 3 . - CDS 13600 - 14313 213 ## EF0876 hypothetical protein - Prom 14336 - 14395 4.6 - Term 14375 - 14423 10.2 15 5 Tu 1 . - CDS 14437 - 16542 2240 ## COG2217 Cation transport ATPase - Prom 16646 - 16705 7.6 + Prom 16573 - 16632 6.7 16 6 Tu 1 . + CDS 16653 - 17405 635 ## EF0873 Cro/CI family transcriptional regulator + Term 17418 - 17466 1.1 - Term 17364 - 17417 1.3 17 7 Tu 1 . - CDS 17475 - 19481 1793 ## COG3158 K+ transporter - Prom 19667 - 19726 8.3 - Term 19711 - 19756 17.1 18 8 Tu 1 . - CDS 19815 - 22460 3185 ## COG0474 Cation transport ATPase + Prom 23242 - 23301 7.9 19 9 Tu 1 . + CDS 23340 - 23588 292 ## COG1476 Predicted transcriptional regulators + Term 23660 - 23706 10.5 - Term 23759 - 23800 -0.3 20 10 Tu 1 . - CDS 23934 - 24965 1097 ## COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) - Prom 25072 - 25131 7.9 + Prom 25034 - 25093 8.9 21 11 Tu 1 . + CDS 25131 - 26021 1018 ## COG0346 Lactoylglutathione lyase and related lyases + Term 26046 - 26096 4.4 + Prom 26464 - 26523 7.4 22 12 Op 1 24/0.000 + CDS 26657 - 27841 1422 ## COG1125 ABC-type proline/glycine betaine transport systems, ATPase components 23 12 Op 2 13/0.000 + CDS 27845 - 28480 980 ## COG1174 ABC-type proline/glycine betaine transport systems, permease component 24 12 Op 3 13/0.000 + CDS 28483 - 29403 1280 ## COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) 25 12 Op 4 . + CDS 29407 - 30069 960 ## COG1174 ABC-type proline/glycine betaine transport systems, permease component + Term 30081 - 30132 6.6 26 13 Tu 1 . + CDS 30141 - 30605 335 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 30611 - 30646 5.1 - Term 30598 - 30633 5.1 27 14 Tu 1 . - CDS 30640 - 32463 1963 ## COG0531 Amino acid transporters - Prom 32574 - 32633 7.2 - Term 32683 - 32734 7.1 28 15 Tu 1 . - CDS 32761 - 33930 1223 ## COG0053 Predicted Co/Zn/Cd cation transporters - Prom 33962 - 34021 11.5 - Term 34095 - 34146 14.0 29 16 Tu 1 . - CDS 34151 - 36856 2747 ## COG1511 Predicted membrane protein - Prom 36886 - 36945 6.3 30 17 Op 1 . - CDS 36977 - 37207 409 ## EF0857 hypothetical protein 31 17 Op 2 . - CDS 37286 - 38038 858 ## COG2365 Protein tyrosine/serine phosphatase - Prom 38111 - 38170 10.9 + Prom 38050 - 38109 9.6 32 18 Tu 1 . + CDS 38212 - 39690 1103 ## EF0855 hypothetical protein + Term 39701 - 39758 7.0 - Term 39694 - 39741 -0.2 33 19 Tu 1 . - CDS 39745 - 40380 387 ## COG0681 Signal peptidase I - Prom 40478 - 40537 2.1 34 20 Op 1 . - CDS 40552 - 40854 172 ## EF0853 hypothetical protein 35 20 Op 2 . - CDS 40859 - 42154 1450 ## EF0852 hypothetical protein 36 20 Op 3 . - CDS 42179 - 42874 539 ## EF0851 hypothetical protein - Prom 43012 - 43071 10.0 - Term 43047 - 43106 12.4 37 21 Op 1 . - CDS 43193 - 43570 456 ## COG2337 Growth inhibitor 38 21 Op 2 5/0.000 - CDS 43586 - 44701 1207 ## COG0787 Alanine racemase 39 21 Op 3 . - CDS 44731 - 45084 409 ## COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) - Prom 45125 - 45184 9.4 + Prom 45199 - 45258 8.3 40 22 Tu 1 . + CDS 45389 - 45655 103 ## EF0847 hypothetical protein + Term 45667 - 45726 17.3 - Term 45661 - 45709 15.1 41 23 Op 1 2/0.000 - CDS 45716 - 47263 2291 ## COG0513 Superfamily II DNA and RNA helicases - Prom 47447 - 47506 4.5 - Term 47405 - 47437 1.1 42 23 Op 2 6/0.000 - CDS 47566 - 48939 1724 ## COG0770 UDP-N-acetylmuramyl pentapeptide synthase 43 23 Op 3 . - CDS 49018 - 50088 1298 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes - Prom 50146 - 50205 7.5 44 24 Op 1 . - CDS 50229 - 50675 479 ## COG1671 Uncharacterized protein conserved in bacteria 45 24 Op 2 . - CDS 50672 - 51700 1069 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit - Prom 51726 - 51785 6.9 - Term 51729 - 51792 17.0 46 25 Tu 1 . - CDS 51794 - 52804 930 ## COG0524 Sugar kinases, ribokinase family Predicted protein(s) >gi|307679226|gb|GL457021.1| GENE 1 10 - 126 221 38 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTIADIVMLTATIIIWSLLIVNILLVIFGYVYYYDLSN >gi|307679226|gb|GL457021.1| GENE 2 123 - 1706 1596 527 aa, chain - ## HITS:1 COG:lin0532 KEGG:ns NR:ns ## COG: lin0532 COG5298 # Protein_GI_number: 16799607 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 25 521 22 498 499 96 22.0 1e-19 MKNKQYLIGWVCFLLFFVFCGFAKPALAAPSKHVLLVYDSLNIAGKKENDVDALQRVLTS FGVEVQSVAVSDYVPGELLNDGYDSLISMVNWPEQAGVIASDFLADRVHFKGKQLHIGRN MRDDEKQYFSGTWKELSHRQYRLEDEKNRFSQVLPFQDQSVVLENTQGQTVGRLKTQELA PEEYPFGVIENGHAFLPMFERKGAVFLESLDVISQWLESEKMSRPFLTISDFNPLRDMSV ATYLQEELVKTTYPYILSSTSVSQNNTILPYKLFTNALRAFASTGVIFLETPVVNNVDLN DQRALKQLMEQQISLLVDRHVYPVGISAPGYWNQDLQYQEDGLAISDTVILRENPPIERV FYRNQTGESITYKNALFDLPYDYLSGIEWTDKDNPNDYRFPMPTTISFSFPNSKKEVDHL IQEVKEAPIVFSVSEADQHFTVQTQTQKIEFRNNRFFLNNQIVNGLADTGVSTVEKQRFT GLFSFFFSITNNILVGVVTLTLIILIILFMIGRKNYRSKYINKEEDK >gi|307679226|gb|GL457021.1| GENE 3 1696 - 3216 980 506 aa, chain - ## HITS:1 COG:no KEGG:EF0885 NR:ns ## KEGG: EF0885 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 506 1 506 506 918 99.0 0 MEKIKKYMNSAFEWLSRYISPSLLAVLGIGLVTSILLFVYPINGLGDNGEYFRVLNSNSL YRVNGDSYDNVAYFVKDFSIMRYFNETTTHFVSTQQFFITIAIWLNKLFYSQTLFDIRFL GFVYLSCFLVSIYILVRGLTEGVSLKKSYLISLLVIFILGDTSYTIYFNSFYTEATSFLL SVSVLAFSVYFYRVTKPRTWLRRIVLVILAQAVVLLIGTTRQEYLLIIGVIIAGLGFFVY LSQRYQRLSMTAFLIALIGFTTLAAFIVPNDIYERDVYHSMTRGVMKDSKVPDKRMSEGG INPQYGLQKGRSYFEEYSPVSPTSEQMKKDFFDKTSFGWVLLNYLNYPSELWQGLNSAVP NVYLVKPNNVGNFEKTTGRAPLEQSKFFMVYNRIKASFFPKNFAFYLLLGVILFGLYGVG LYRGLKRNEPRLVFRFFLMTGIYLNLLVVFISTIIIDGDSDLVRHLFLVSVFLDFLLLQI VSDVIGKRMWQDTTPQVIGEVEGIEK >gi|307679226|gb|GL457021.1| GENE 4 3230 - 4333 1076 367 aa, chain - ## HITS:1 COG:no KEGG:EF0884 NR:ns ## KEGG: EF0884 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 11 367 1 357 357 647 99.0 0 MFREKSYKVEVEKVNPKIQRLMSTDKQHFLTKHEFHTKETAKRKDLLKFFIETRLKTDGG FLTNYLPDAERKDVATGHELLSESSGLYLRNLAFDTQGRFDNFYKQTKDTFYDGVQFSYR IDEQGNKYNVNASIDDLRIIRSLIEAGGHFKTDQYDQEIKKLGKSFMKTSMKDNILIDFY DSKSKQQSSETSLFYIDLITLGYLYKEFGISADYLQYHYQLIDDGYISDDLPLYQTEFNH QTNKYENNGTLNIIESLLTIVHLSEVGMAKQTSIDFVRKQVQQGTLFNSYDLNGSPVDKN QSAASYAIAALIGVAENDKELYRAAITVLNNFQIMDSSSPIYGGFGDKVTKQVYSYNNLM ALLAYDF >gi|307679226|gb|GL457021.1| GENE 5 4520 - 5449 1096 309 aa, chain - ## HITS:1 COG:lin1595 KEGG:ns NR:ns ## COG: lin1595 COG1484 # Protein_GI_number: 16800663 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Listeria innocua # 1 307 1 306 307 275 47.0 6e-74 MEDVGKEMSKIIQKRDINERYEELVNEVLKDQDVQAFIQANRERLTDEDIRKSYAKLYEF VQEKKKFQVNDPAMIAPGYEPRLMLNFHYIDVTYVPTADLIARQKEEEIRNRVRSMDMPK DVREANLRDFDPSSQGRAKALAEAMQFLREYPATPKEFHKGLYLQGPFGVGKSFLLGAMA NALAERGFTTTIVHFPTFTVEMKQAIGRDQVGEKLDAVKKSPILMIDDIGAESMTSWIRD DVLSVILQYRMQEQLVTFFSSNLDLKALEEHLTVTQRGEQEPLKARRIMERVRYLSKEIT MTGNDRRNG >gi|307679226|gb|GL457021.1| GENE 6 5449 - 6858 1515 469 aa, chain - ## HITS:1 COG:BS_dnaB KEGG:ns NR:ns ## COG: BS_dnaB COG3611 # Protein_GI_number: 16079951 # Func_class: L Replication, recombination and repair # Function: Replication initiation/membrane attachment protein # Organism: Bacillus subtilis # 20 465 20 465 472 120 25.0 7e-27 MKGNRQRIQPKNIFQAVIDSPLSDQEKEVLTFLYQPIVGANAFSLYWLLLSETTDSEENG SLFHADLISLLDLSCQQLEEACYKLEGIGLLETYKKTDRELGDCYLYYLKAPETAARFFK DEVLALVLFNRVGQRKFDQLVQKFQPHPTKTEGYQNVSASFKEVYAFKEEQIVSEANRLT TIQETFSQQEKSKKISVSTDSFDWHYFVEGLHRLGLQLPEDEASFQEEVYVFHQLYGINE LDMVDFASKSFDYYTSRILPKELVRTIHQAFDPDKKPQPTNVVTNKQAQLTVEEQQTYRY NALKMNGFSELDIQMIMDSEKNPPIQYLEALKNSRGGYTTPQERSLVKYLIAKSGLPTSV INILINYVYNIQQQPTLKAEYVNRIANEWGQSGIHSPEKAIEHVRELAKQSQTKQKQRQQ NYSGKCQTVRQERLPEWADQPNDETKLSPEEQAELDRQIQEFLNQGGDQ >gi|307679226|gb|GL457021.1| GENE 7 6874 - 7356 491 160 aa, chain - ## HITS:1 COG:BH3146 KEGG:ns NR:ns ## COG: BH3146 COG1327 # Protein_GI_number: 15615708 # Func_class: K Transcription # Function: Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains # Organism: Bacillus halodurans # 1 150 1 150 153 181 61.0 4e-46 MRCPRCHHNNSRVIDSRQADDGRAIRRRRECENCSYRFTTFERIEAAPLLVIKKNGDREE FNRDKILRGLIRSAEKRPVAMEQMVQIVDNVENRVRSLGENEVSTTLIGEYVMEDLVNLD EIAYIRFASVYRQFKDMSVFLKELQDIVDKAKSSSPDSEN >gi|307679226|gb|GL457021.1| GENE 8 7444 - 7509 60 21 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKISEKTVKVFVFIKEWQRFN >gi|307679226|gb|GL457021.1| GENE 9 7536 - 8135 733 199 aa, chain - ## HITS:1 COG:BS_ytaG KEGG:ns NR:ns ## COG: BS_ytaG COG0237 # Protein_GI_number: 16079958 # Func_class: H Coenzyme transport and metabolism # Function: Dephospho-CoA kinase # Organism: Bacillus subtilis # 1 190 1 191 197 170 49.0 2e-42 MTKVLGITGGIATGKSTVVALFKKAGYPIVDGDIIAREIVAKGQPALAAIVETFGPEIVL TTGELDRKKLGQLIFASPQKRELLNETLKPFLRKEILRQIEEAKKKASLVIVDIPLLYEA HYEAIMDQVAVVYVPEKIQKERLMARNQLTEEEAQQRIASQWPIEMKKERADIVFDNQGT REETEQQVKKWLEEQTGKK >gi|307679226|gb|GL457021.1| GENE 10 8132 - 8974 906 280 aa, chain - ## HITS:1 COG:BH3152 KEGG:ns NR:ns ## COG: BH3152 COG0266 # Protein_GI_number: 15615714 # Func_class: L Replication, recombination and repair # Function: Formamidopyrimidine-DNA glycosylase # Organism: Bacillus halodurans # 1 273 1 274 274 285 52.0 7e-77 MPELPEVETVRKGLEKLVVGKTIQEVIVFWPRIIESPEVDVFQGQLAGQTIEGIERRGKF LIFKLSDNDMISHLRMEGKYEFHQADDEIAKHTHVMFTFTDGTQLRYLDVRKFGRMTLVP KNQGHQYKGILALGPEPTPDVFQLATFQQGLKKHHKAIKPLLLDQKLVTGLGNIYVDEAL WQAQIHPEQPADSLKPAEVATLYQAIIDVLARAVEAGGTTIRTYLNALGEAGTFQVALNV YGQTGLPCNRCGTPIVKTKVAQRGTHYCPQCQQLKGRRLK >gi|307679226|gb|GL457021.1| GENE 11 9074 - 11722 3300 882 aa, chain - ## HITS:1 COG:BS_polA_2 KEGG:ns NR:ns ## COG: BS_polA_2 COG0749 # Protein_GI_number: 16079961 # Func_class: L Replication, recombination and repair # Function: DNA polymerase I - 3'-5' exonuclease and polymerase domains # Organism: Bacillus subtilis # 322 882 1 560 560 640 60.0 0 MTKKKLLLVDGNSVAFRAFFALHNSLERFKNKNGLHTNAIYAFNNMFENVMQKEMPTHVL VAFDAGKTTFRTEFYSEYKAGRSKTPGEFKEQMPYIRELLEGLGVKYYELPNYEADDIIG TLANKVDKDEFDVVVLSGDRDLTQLATDTVKVDITVKGVSDIESYTPEHIAEKYDGLTPK QIIDMKGLAGDTSDNIPGVTKIGEKTAIKLLKQYGSVEGVYENIDEMKKSKMKENLINDK EQAFLSKRLATIEVNAPVEVNVEDLAYEGKNLEKLVPFYKEMDFKQFLAKLDITEEPVEM EDILFEVVEDQLTNEMFTDDMALYVEMMEDNYHTSPIVGLAWGNNKKIYTTNNLAVFESQ PFIDWLMDETRKKNVYDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVAQ HYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHLARKIKAIQFLTSKLDSELTEKNQADLF YKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEFNLNSPKQL GVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYRQIAKIQSTYVEGLLKV IQPDNKIHTRYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYS QIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVY GISDYGLSQNLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLS DINSRNFNLRSFAERTAINTPIQGSAADILKIAMIEMARRLKEEKLQATMLLQVHDELVF EVPESELEQLNQLVKEVMEHAVSLHVPLITDSSWGKTWYEAK >gi|307679226|gb|GL457021.1| GENE 12 11910 - 12821 1069 303 aa, chain - ## HITS:1 COG:lin0643 KEGG:ns NR:ns ## COG: lin0643 COG4989 # Protein_GI_number: 16799718 # Func_class: R General function prediction only # Function: Predicted oxidoreductase # Organism: Listeria innocua # 1 303 1 305 305 389 60.0 1e-108 MKQLQFGTSDETVSSVILGCMRLNGAENPQQVIETAYDHGITFFDHADIYGGGDCETIFG KALKESTIRREDIFIQTKCGIRQGFFDFSKAHILEAVEGSLQRLGVDSVDALLLHRPDTL VEPEEVAEAFHLLEKQGKVRYFGVSNQTPGQIELLKTAVKQPLLANQLQFGIKHTGMVDQ GLQTNMEISRSIDYDHGILDYSRLKQMTIQAWSPYQYGYFEGVFIGNEKFPELNQKLSEL AEKYQTTPTGLASSWILRHPANMQVIAGSMNLGRIEEIAKAADIVISREDWYDIYRAAGN VLP >gi|307679226|gb|GL457021.1| GENE 13 12890 - 13588 365 232 aa, chain - ## HITS:1 COG:no KEGG:EF0876 NR:ns ## KEGG: EF0876 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 232 243 474 474 437 99.0 1e-121 MSLKEQKALFVILEAHFGGCFGKRARKYFIHEQMKIESLCLKTAIFIMKEIRRNFTQHHF NYQEIHLCRFLSTHMNSLLDGQAWLPAHKQEQTLAARYQQTWHRLQKLIRLLKRLYPVFT SVKERELTSCYFYHILDLFNPILYEKKYIICLLTDFPPEKEQALGQSIKSYFSEKKNITI IHGKPTYQLHQAHLLIVNHLFQMNVALSSETVVYLPEELSPAFFEKVEANLS >gi|307679226|gb|GL457021.1| GENE 14 13600 - 14313 213 237 aa, chain - ## HITS:1 COG:no KEGG:EF0876 NR:ns ## KEGG: EF0876 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 233 1 233 474 409 97.0 1e-113 MDFKELLSFEHKNMLELLDLLQQEQTFSVLMAAEKLKVSDKTIHCYIQRFEKKQETFKIE GLCKIYTTTKGIVKYRELCVCGLARFRQKFCYFIPEFYILRCLIEERINYAQLTQVLGLQ ESTLRKKLSNIRRWLVNFDIIVRQKHYDLTGNEWQIRQLILCFYLFFQESCLEENREMTR KIITFFELDLNVAQQNHLSWLIYIWERRYRGGHEISVPNANLFQQTSAFFIYFVWKC >gi|307679226|gb|GL457021.1| GENE 15 14437 - 16542 2240 701 aa, chain - ## HITS:1 COG:MA0166 KEGG:ns NR:ns ## COG: MA0166 COG2217 # Protein_GI_number: 20089064 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Methanosarcina acetivorans str.C2A # 4 698 63 763 764 565 43.0 1e-160 MSAKHNHEQHQEKQPTMSHDKMNHMNHDMAHEQMAMSHQHEGMKGMDHSMHMGNFKQKFW LSLILAIPIIVLSPMMGFQLPFQFTFPGSDWLVLILATVLFFYGGQPFLSGAKMELQQKS PAMMTLIAMGISVSYFYSLYAFYMNHFTNQAHVMDFFWELATLIVIMLLGHWIEMNAISN AGDALKKMAELLPDTVKRMTEHGEEEIPLQDVQEGDRLIVRSGDKIPTDGKILKGSTTVD ESMVTGESKTVEKNIGDSVIGGAVNGNGMIEISVTGTGENSYLSKVMEMVKQAQSEKSKL ESISDRVAKWLFYIALFVGVLAFIGWLLVTKDLSLAFERMVTVFIIACPHALGLAIPLVI ARSTSIAAKNGLLLKNRNALEQANKVEYVLLDKTGTLTEGQFTVTGLELMSKQFTREEAL KYIGALEKNANHPLAIGIMNYLNKQAVQPYEAHNLQALSGVGLVATVQNQEVKIVNEKEV ARLQLTFDETIKTNYQEQGNTLSYLIIAGQLVALLALGDKVKPEAKTFIAELQAQGITPV MLTGDNKTAASAVANYLGMKEYYAELLPEDKEKIVQQYLTEGHQVMMVGDGINDAPSLAR ASIGIAIGAGTDVAIDSADVVLTDSDPKDILRFLDLAKQTRRKMIQNLWWGAGYNIVAIP LAAGVLAPLGIVLNPAVGAVLMSLSTIIVAANAMTLHISKK >gi|307679226|gb|GL457021.1| GENE 16 16653 - 17405 635 250 aa, chain + ## HITS:1 COG:no KEGG:EF0873 NR:ns ## KEGG: EF0873 # Name: not_defined # Def: Cro/CI family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 19 250 1 232 232 422 99.0 1e-117 MYILRTPYPHIYSKRSVSMKITTKQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWE LGLNLPNKRYLKKIAKACDTTVDWLLYGNFDRFVRQLIKENFQNKQLLKPPFFTQLMGRL SEEQLSYHDSLKIMIQAQKLQQSFYAFPLTVEAPSHSQESISIYEPTTAEEQSDQSYYHP FILSELHELFTHSQNPELDYSLIIAFLPLLKVDQLTEPQKEVLLAIFKRMNSFKDQTLLN EFFVELQYLL >gi|307679226|gb|GL457021.1| GENE 17 17475 - 19481 1793 668 aa, chain - ## HITS:1 COG:SPy1414 KEGG:ns NR:ns ## COG: SPy1414 COG3158 # Protein_GI_number: 15675333 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transporter # Organism: Streptococcus pyogenes M1 GAS # 12 653 11 647 666 753 58.0 0 MLHKAEGFDRRKFTMAGILVAMGVVYGDIGTSPLYVMKAIVGDNGGLARVSESFILGSVS LIFWTLTILTTIKYVVIALNADNHGEGGIFSLYTLVRKKSKYLIIPAMIGGAALLADGVL TPAVTVTTAIEGLRGIPAFFEHFGNDQTIIVVITLTIILILFSVQRFGTELVGKAFGPIM FLWFTFLGIIGLMNFSQDWTVIRALNPYYALQLLVSPENKLGLFILGNIFLATTGAEALY SDLGHVGKMNIRISWPYIKICLILNYLGQAAWLLTVKENPEMQALAEINPFFQMIPRGIL VFGVVFATIAAVIASQALISGSYTLVSEAIKLKLLPRLKIIYPGSNIGQMYIPAVNLILW LACSAIVLAFRTSTHMEAAYGLSITITMLMTTILLLFYLLDKIPAWSAYLISLFFAAIEV VFFFSSAAKFFHGGYVAVGMAVFLLCIMIIWERGNEIKEATAEQVSLEKYVPQLKALKED TSVPMYQTNVVFLTSDRVDGEINRNIIYSILDKQPKRANVYWFVNVQVTDEPFTQEYSVD MLGTDFIVQVQLYLGFHISQEVNVYLRQIVHDLMKTGRLPKQPQRYSLTPGREVGDFQFV LIQEELSNVSELKKWDRQIMQAKLAIKNLTTSPESWFGLEYSEVKYESVPLIIGPQRKTH LVERKNRS >gi|307679226|gb|GL457021.1| GENE 18 19815 - 22460 3185 881 aa, chain - ## HITS:1 COG:lin0814 KEGG:ns NR:ns ## COG: lin0814 COG0474 # Protein_GI_number: 16799888 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Listeria innocua # 5 869 5 868 876 877 54.0 0 MEAYKQSVDTVTKEVSVNTETGLTQQEAQQRLKENGRNQFEEAKKDSVLKKFIHSLSDFT TIILLVAAAISFYTAIVTEHGEYFEGILIIAIVIINAVLAIVQEGNAEKSLAALQDMNKQ SSAVLRDGKVIEVDAEELVVGDVLVLEAGSMITADARLIQASQMRVEESALTGESEPVEK DPTYVGHDDDGLGDQINMIFKGCTVVNGRGRAVVTATGMNTEMGKIAGLLNNSDQQKTPL QKRLNQLGKRISLLALGAAAIVFIIGELQGEPLLEMFMTAVSLAVAAVPETLTVIVTLTL AYGVQKMAKKHAIIRRLPAVETLGTANVICSDKTGTLTQNKMRVRRVWHRGDEVTDTEDA MTDEAMEVLKMAALCTDVIVEKEGDELTVTGNPTEAAIVRAVEENYHTKEELEEKYPRIG EIPFDSERKMMTTVHQWGKKYISITKGAFDVLLPRFGFGDVDQAAIVNDRFGKRALRVIA VGYAVYDEPPKEITSEALEKKLRLLGLIGMIDPPRPESKGAIARAKKAGIKTVMITGDHV VTASAIAKELGILKDKSEALSGSELKKMSDEELDKRVKDLSVYARVTPEDKIRIVQSWQR SGAVVAMTGDGVNDAPALKASDVGCAMGITGTDVAQGASDMILTDDNFATIVDAVAQGRA VYRNIRKAINFLLSCNISEIFIVLIAMLLGWGAPFTAVQLLFVNVVADGLPGFALGKEPA EKGIMDEAPIPKNEGIFARGLWQKIGINAAVFTVITLFGFYLGAFVPGVSAYVSNSYEVG QTVAFLILAYSSILHVFNVRSANSVFRVKLSSNKSLFEMVVLALLITTTIALLPFTQELF GLVHISLNHWMLAIFLSFVPIFVNEMIKFHFSEVEEEEEVI >gi|307679226|gb|GL457021.1| GENE 19 23340 - 23588 292 82 aa, chain + ## HITS:1 COG:MJ0272 KEGG:ns NR:ns ## COG: MJ0272 COG1476 # Protein_GI_number: 15668446 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Methanococcus jannaschii # 8 72 13 77 79 68 49.0 4e-12 MRKKKKSSFESSIHVYRAMARMTQQDLANRVGVSRQTIIQLERNKYNPSLLLAHDIANVF GVTIDDVFTFKETLNDDVEQEA >gi|307679226|gb|GL457021.1| GENE 20 23934 - 24965 1097 343 aa, chain - ## HITS:1 COG:SP1416 KEGG:ns NR:ns ## COG: SP1416 COG0809 # Protein_GI_number: 15901270 # Func_class: J Translation, ribosomal structure and biogenesis # Function: S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) # Organism: Streptococcus pneumoniae TIGR4 # 2 342 1 341 342 547 77.0 1e-155 MLSTEDFDFDLPEELIAQTPLKDRASSRLLVVNKETGDTEDKHFHDILDELQPGDALVMN NTRVLPARLYGEKPETGGHLEVLLLTNTEGDTWETLIKPAKRAKVGTEIQFGDGRLKAVV KEELEHGGRIIEFKYDGIFLEILESLGEMPLPPYIKERLDDPDRYQTVYAEENGSAAAPT AGLHFTKELLEEIKAKGVHLVYLTLHVGLGTFRPVSVDNIEEHHMHSEFYRLTEEAAKQL NEVRQAGGRIVAVGTTSIRTLETIGTKFNGEIQADSGWTDIFITPGYQFKVVEAFSTNFH LPKSTLVMLVSAFAGKDLTLAAYQHAIEEKYRFFSFGDAMFIK >gi|307679226|gb|GL457021.1| GENE 21 25131 - 26021 1018 296 aa, chain + ## HITS:1 COG:lin0752 KEGG:ns NR:ns ## COG: lin0752 COG0346 # Protein_GI_number: 16799826 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Listeria innocua # 6 296 6 295 296 277 48.0 1e-74 MHAQFHHVSLLARHGQENQSFYTKLLGLRFVKNTVNQDNNRMPHYFYGDYQGTPGSLVTF FIVPLLGNRYEEKNYLATIGLKIPQNSLSFWEQRLTENKIPFNKKEKSLHFSDPDDTHII LTEVPENPLKETLVVSNDIPAAVQIIGLASTEFHVPDSEKTLAFFETFLGWQAVGNTIIL SETESFSVHQTTSDKTSRMGRGSMDHIAFSVADDEALQELHTRALAQGWEIEMYVSRGYF KSLYIREPGGNRVEFATLAPGFTLDEPLEHLGETLALPPFLEPKRTAIEANLYKDM >gi|307679226|gb|GL457021.1| GENE 22 26657 - 27841 1422 394 aa, chain + ## HITS:1 COG:lin1467 KEGG:ns NR:ns ## COG: lin1467 COG1125 # Protein_GI_number: 16800535 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, ATPase components # Organism: Listeria innocua # 1 393 1 392 397 489 65.0 1e-138 MIEFQHVSKFYKGGKVAVDDINLSFDKGEFICFIGTSGSGKTTSMRMLNRMTDPSKGKIL IDGQDIQKINPVELRRQIGYVIQNIGLMPHMTIRENIVLVPKLLKVPVEERNKIAEKMID LVELPREMLDRYPNELSGGQQQRIGVVRALAANQDIILMDEPFGALDPITRDSLQDLVKD LQERLGKTIVFVTHDMDEALKLANKIAIMSEGKVIQFDTPDNILRHPANEFVEELIGEDR LLQAKPDFTTVDEVMLNSAITITPEKSLQEAIKLMREKRVDTLLVVDNSNVLKGFIDVET LDQQRGKASSVGDILNKDVFFVQKTALLRDALQRILKRGLKYVPVVDEQKRVVGILTRAS LVDIVYDVIWGDETTISEAVEAKQSESETDKEEA >gi|307679226|gb|GL457021.1| GENE 23 27845 - 28480 980 211 aa, chain + ## HITS:1 COG:lin1466 KEGG:ns NR:ns ## COG: lin1466 COG1174 # Protein_GI_number: 16800534 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, permease component # Organism: Listeria innocua # 3 211 6 214 218 244 65.0 1e-64 MSSFFQEYGSEMISKSIEHIYISFFALLLGVAIAVPVGVWLTRLPKVANIVIGLTSALQT VPSLALLALMIPIFGVGKTPAIIALFIYSLLPILRNTYIGMKNVDENYRDVAKGMGMTNL QSIFSVELPIAMPTIMAGIRLAAVYVIAWATLASYIGAGGLGDMIFSGLNNYQPELIFGG TIPVTILALLADVLLGLLENRLTPKALREGE >gi|307679226|gb|GL457021.1| GENE 24 28483 - 29403 1280 306 aa, chain + ## HITS:1 COG:BS_opuCC KEGG:ns NR:ns ## COG: BS_opuCC COG1732 # Protein_GI_number: 16080434 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) # Organism: Bacillus subtilis # 1 304 1 303 303 342 55.0 5e-94 MKKKLKLSLLFLSSLLLLAGCSLPGLASTSDDNTVAITGGITSEAQILGSIVADMVEHYT DKKTNVINNLATTTINHQAMLNGDASISAARYTGTDVTTTLGLPAEKDPKKAFNLVQSEF EKRYQQTWFPSYGFENTYVFLVTKETAEKYNLKTVSDLGKVADKLVAGVDTAWITREGDG YEGFKKEYNFQFKSILPMQIGLVYDAVNAGKMDVILGYSTDGRIGSYDLVMLKDDKRFFP PYDAAPVVSDKLLKETPEIKDVLNRLDGKISTKKMQELNYQADNDLIEPAVVAERFLKEN NYFEGE >gi|307679226|gb|GL457021.1| GENE 25 29407 - 30069 960 220 aa, chain + ## HITS:1 COG:BS_opuCD KEGG:ns NR:ns ## COG: BS_opuCD COG1174 # Protein_GI_number: 16080433 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, permease component # Organism: Bacillus subtilis # 4 217 1 214 229 251 65.0 6e-67 MNNMNLFQQFIYYFQQNGGYVFQQFLRHFLISIYGVIFAAIVGIPIGIMISRKRSLANWI IRLANIIQTVPALAMLSILMLGMGLGVNTVVVTVFLYSLLPIIKNTYTGMIQVDRNILDV GKGMGMTKVQLLYMVELPLSVSVIMAGIRNALVVAIGITAIGAFVGAGGLGDIIIRGTNA TDGASIILVGALPTAFMAIITDWVLGIIERRLDPASKHSN >gi|307679226|gb|GL457021.1| GENE 26 30141 - 30605 335 154 aa, chain + ## HITS:1 COG:L69304 KEGG:ns NR:ns ## COG: L69304 COG0454 # Protein_GI_number: 15673990 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Lactococcus lactis # 6 149 4 148 152 101 37.0 5e-22 MSNYTIIDLNQQPHLIPSAAQWFSQKWQIPAEAYQGSMQEMLTSENHVPHWWVCLNKQQD IVAGVGVIDNDFHNRADLTPNLCALYVEPTFRHQGLAGILLTTVGDFLANSGFKKLYLLT DHTTFYERYDWEFLTMVTTEEQSCARIYQKQLRQ >gi|307679226|gb|GL457021.1| GENE 27 30640 - 32463 1963 607 aa, chain - ## HITS:1 COG:lin2235 KEGG:ns NR:ns ## COG: lin2235 COG0531 # Protein_GI_number: 16801300 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Listeria innocua # 4 607 5 607 607 700 59.0 0 MADLKRLFIGKPLKSAENDEHKLSRFAALALLSSDALSSIAYGTEQIVVVLVTLSAAAIW YSLPIAAFVIILLISLTLSYRQIIHAYPHGGGAYVVSSENLGRNAGLLAGGSLLVDYMLT VAVSVSAGAEAIISAIPALYGHQVAISIGIVILITLMNLRGLRESASFLMLPVYSFIAII TLLIVVGLFKIVTGAQPLNATALPGAVVPGISIALVLRAFSSGSSSLTGVEAISNAVPFF KKPRAKNAAGTLALMATILGFFFVGITFINYWYGIVPKEEVTVLSQIGKAVFGQNILYYL LQFATALILAVAANTGFSAFPVLAYNLAKDKFMPHMYMDRGDRLGYSNGILTLAAGSIVL LLIFQGSTERLIPLYSIGVFIPFALSQSGMVVKWRKETKNWLPKSIANIVGAFISFAIIA ILFIYRLGDIWPFFIIMPVLIYAFYRVNTHYKNVAEQLRLEDGAQLHEFDGNTVIVLVGN VTKANVGALNYARSIGDYVVAMHVSMDENVEKEKEIQEEFKKHFPDVRLSIVHSSYRSLQ NPILRYVDLVSKNATKHNYSTTVLVPQFVPNKRWQNILHNQTSLRLRIRLAWRENIIVAT YSYHLKK >gi|307679226|gb|GL457021.1| GENE 28 32761 - 33930 1223 389 aa, chain - ## HITS:1 COG:CAC0606 KEGG:ns NR:ns ## COG: CAC0606 COG0053 # Protein_GI_number: 15893895 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted Co/Zn/Cd cation transporters # Organism: Clostridium acetobutylicum # 21 386 32 400 403 275 38.0 9e-74 MIQALLQRYEKKIERRKLEKRTAFGAFAGRIGLVSNLFLFVSKFMIGLLSGSVSIMADAI NSLSDTISSVLTLVGFYIAGKPADKEHPYGHERFEYISGMLVSLVITFIGFEFLTTSVDR ILHPESIKVTPILFAVLALSIGIKIWQGLFYKKVSAKIDSQALVASAKDSFNDVYTTLAV LISAFIEGVTGLRIDGYIGFLIAAYIIYSGLQLIRKFINELMGMRPSQTEIDEMKNVLSK METIVGYHDLLIHNYGPNQTFASVHIEIDDRWDLNKAHQTIDAIEAKFKEELDVNLVCHI DPVNLYDPTQQFVHQTIKKIIRSFDASLKVHDIRLVTHGEEPKILFDLVLPTESKLSEFE LGVEIQRQVYEKIGRYKVEITFDHTYLLQ >gi|307679226|gb|GL457021.1| GENE 29 34151 - 36856 2747 901 aa, chain - ## HITS:1 COG:L118462 KEGG:ns NR:ns ## COG: L118462 COG1511 # Protein_GI_number: 15673652 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 1 901 1 901 901 1267 71.0 0 MKHIKNTWELFILDWKRIFKNPVATFLIVALMIIPSLYAWFNIKALWDPYSNTGELPIAV YSDDQTATFQDKSVNIGDEVLKNLKKNKQLGWRFVDSKKELDKGVQSGKYFAGIYLPKDF SKDLLSFTSGDINKPKIEYSINEKINAIAPKITSKGASSIQSQISEEFIKTASSTLIKTF NDIGYDIDKNMVSIQKVKSMILDTDANIGTIDTYAKQVTDLHGKMPELKEKLAKANDAMK YLPEVDALGEKIVELNGKMPSIKEQASVILTLQEKIPEIQNAGRQIAMIDEDFASVEQTM SEGIQEAKQGLEIIQQVQTALPDIRKLGDQANDLGNVTLDGANKLQEALPSITNSVEVTL KSIQQVATTTTSVVATIRQALDDGQLTPEKKQHINEVVQDFTTNIQRQQQAISNLIEFMQ KIQENAGNHDLDETIRQLTNLSTLLGDFSNRLNELNNYVQNNDLQSAKKLLDEIDAAAQK IAGIAGAIKADEISNTVNTVTSKLIATIQNAQGQLNKAQQIDFEGLLSSTSQTVTNAISL LEKYQAEMPAIKQEIHDANTMLNGNMETIVNGINRGADLYKNDLSVIQDKVSKAAAFMQN DYPGIRKDLTNTLKTVNEKMPDVEAALDKANELIINDWPNIKTGLHKAANAIRKGEKEVD LGEILKLLKLDANKESDFFTQPVEVKEHAVYPIANNGSASTPFYTALCLWVGAVLFSSVA TTDVYLEGKDKKRFSKREQFSARMFTFIVMGIGQALIVTLGNYFALGVDVRNPAYSVWFA VLIAITFMIMVYVLVALFGNVGKGIAIIILVLSISGGGGNYPIQVSGKFFQMINPFLPFT HAVNLLRESAGGIYWPNAWFAIWIMVGISVVFSIGGAILYPHLEHRSKKFAALAQKSHLF H >gi|307679226|gb|GL457021.1| GENE 30 36977 - 37207 409 76 aa, chain - ## HITS:1 COG:no KEGG:EF0857 NR:ns ## KEGG: EF0857 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 76 1 76 76 97 100.0 1e-19 MKEGQEQFLTFILDRTKEDKKEKMQALLAEMFERQQTGKLDKMYLMTKAPKLLAYLKPEA IDEVKQVVSEFSKNMK >gi|307679226|gb|GL457021.1| GENE 31 37286 - 38038 858 250 aa, chain - ## HITS:1 COG:lin1914 KEGG:ns NR:ns ## COG: lin1914 COG2365 # Protein_GI_number: 16800980 # Func_class: T Signal transduction mechanisms # Function: Protein tyrosine/serine phosphatase # Organism: Listeria innocua # 1 247 48 296 298 158 33.0 1e-38 MNSVVNFRDIGGFPTQQGTVVKTGHFFRSGELVNVAQADQQKLVEDYQIKRIYDFRSAAE TQERPDDSIQGTNYLHIDILADIQAQTASLEGMLKTVGSPDEAMDMAYKEMVLSNSGRKG YQTFFENFLSYPQEAILFHCFAGKDRTGIGAALILSALGVEHSYILEDYLKTNEQRKTAN EQIIAQYQANGTPPAEIQQLETLLYVKKEYLATALQAIEKEFGSVEGYLKEGLGLPLSAK KDMLSLYTKS >gi|307679226|gb|GL457021.1| GENE 32 38212 - 39690 1103 492 aa, chain + ## HITS:1 COG:no KEGG:EF0855 NR:ns ## KEGG: EF0855 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 492 1 492 492 851 99.0 0 MLKRDFLEKPYDYMNDILLFLYNNKGRATRNELVDFFNISLPTLNEYLSFLEQFLKEEQL QENLTLTVLGDTLYLNKAPTFSMKAMIMLFLDKSIKFHMVQQLFHKNEINGGYFQQNYAI SSATYYRKIVELNDLLNEFNLRIKRGKLVGEEKQIRFFFFNFFWFIFEEKTDLEKELANQ YLGLIEILQEIPRITFDHTEILQIKLWMKISFRRMVLEPLPTISPHDVQLDRPLFEEINL SIHTYMKRIYRPYTINEAYMFYDFFCSMHNYSANAAFAFRLAKQQRIEKTYLNEMNRVIL TYLKARGYLSHYVLPIRLLYIENLLFQLHAQLYYFSGFILPFDYWTIQSLLKVLRHPFSE SEVYELVEIATTNFATKATASKYQNQFTEINYTLILNHIAELNEKKITIGVYHSLSSAYS ELVAQKIQQSIAGKYPLKIEPYNAENHYDLLLMNTNNEQLVAQYDHYYIFSDISNRYDLQ SIEKIIQLLLGK >gi|307679226|gb|GL457021.1| GENE 33 39745 - 40380 387 211 aa, chain - ## HITS:1 COG:lin1309 KEGG:ns NR:ns ## COG: lin1309 COG0681 # Protein_GI_number: 16800377 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Listeria innocua # 24 198 7 185 189 92 31.0 5e-19 MEYLLEQTDNHQSIRGPKRKMTAEEIKKKRQAYQKKQRVQVVKFFMPAILFAIFVFFFVL KTSSYPIAGQSMKPTLNAGERVLVQRTKQVARYDVIAFKAPLASKGTYVKRIIGVPGDRI WVNEGKLYLSEEPIASDNEALPENASRFDLSEEAAAQLRLFQKIPAGHYFVLGDNRTHSS DSRTFGFVEIQAIEGIVVFKMAPFKEIGKVK >gi|307679226|gb|GL457021.1| GENE 34 40552 - 40854 172 100 aa, chain - ## HITS:1 COG:no KEGG:EF0853 NR:ns ## KEGG: EF0853 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 100 9 108 108 156 100.0 3e-37 MVSKKLTGARKLHCLGVLFLAVTLSSSAERLQAAAVSKEEQSLRQPLIRKNIVTEKSEYL VEANQSIWELAQDAQKPLNQFMKENQLRSSYIKKGTQLVK >gi|307679226|gb|GL457021.1| GENE 35 40859 - 42154 1450 431 aa, chain - ## HITS:1 COG:no KEGG:EF0852 NR:ns ## KEGG: EF0852 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 431 1 431 431 402 99.0 1e-110 MTKRRLIKKIKDISDDTLEKEVFFQPGFEPEKIISGIKPEQQEKEMATLRERLAYYQKKE TAFKKLQEENEQLKNQQETEKQALEEKNQALLETLNQKEHEIFELEEQLETNSETTTEAT TLQTNLQNAEKQLTTVHNQMERLESELTQQVAELEKESAEQQQHIQTLHNQLAEEKGKLE KKGDITGMEKQVETLTTELEESTTTQQALQEQIEKLTVQLQKVEAEKQTLQEAAQQEVIV KQRMEELKNELQNSLQQKNEAEVKLGRLQGVNDKHLAEKQVYEGELAALRKEVEAKEDSL EQVQKELKTLQAVSKNIEPSSEQLTELLRAKQQINDLLMKNQQLQEEALKSQQEIGEVMV SAKKEANRIVNEAKVEAKHLINSAELEMLNIGNRAKSISNEVEASKVEVLEIYRELEERL TKLTRLEQDNY >gi|307679226|gb|GL457021.1| GENE 36 42179 - 42874 539 231 aa, chain - ## HITS:1 COG:no KEGG:EF0851 NR:ns ## KEGG: EF0851 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 231 1 231 231 377 98.0 1e-103 MMIVVLLMSSCLFLFVSYQLYLRLLVEKLDSEDRTLKRKINFYKYQKNSRLMIYLLFSVC LLSVLLLGIVYTYYQLNQRNIRMEQRIELLAQGQATQGDKIKKQAIKKTALNQFPWKQAV STESAAVLTNYELQLAREWRPYFGETSITIIRSEKTQTLTLSVFSVGLSYHEFQTGQDNI VALIAALNSVKEITMIDFNFTYRDQEQTLVKSIDTYARETLETNLEPVVIS >gi|307679226|gb|GL457021.1| GENE 37 43193 - 43570 456 125 aa, chain - ## HITS:1 COG:BH0522 KEGG:ns NR:ns ## COG: BH0522 COG2337 # Protein_GI_number: 15613085 # Func_class: T Signal transduction mechanisms # Function: Growth inhibitor # Organism: Bacillus halodurans # 1 112 2 113 116 154 69.0 3e-38 MVKRGDIYFADLSPVVGSEQGGVRPVLVVQNNLGNHFSPTIIVAAITAKMAKPKLPTHIG INSDETGIEKDSVILLEQIRTIDKGRLKEKVCHLRLDIMEEVDRALGISVGLSSDSAPAK ANSAT >gi|307679226|gb|GL457021.1| GENE 38 43586 - 44701 1207 371 aa, chain - ## HITS:1 COG:lin0885 KEGG:ns NR:ns ## COG: lin0885 COG0787 # Protein_GI_number: 16799958 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Listeria innocua # 1 370 1 366 368 367 48.0 1e-101 MVVGWHRPTRLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGA TGFCVALLDEAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEATLQQLT PESNTPLRVHLKVDTGMGRIGFLTPEETKQAVRFVQSHKEFLWEGIFTHFSTADEIDTSY FEKQAGRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPS YALKPALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGFTVL VNGKRCEIVGRVCMDQCMIRLAEEVPVGSVVTLVGKDGNEENTLQMVAEKLETIHYEVAC TFSQRIPREYN >gi|307679226|gb|GL457021.1| GENE 39 44731 - 45084 409 117 aa, chain - ## HITS:1 COG:SP1699 KEGG:ns NR:ns ## COG: SP1699 COG0736 # Protein_GI_number: 15901533 # Func_class: I Lipid transport and metabolism # Function: Phosphopantetheinyl transferase (holo-ACP synthase) # Organism: Streptococcus pneumoniae TIGR4 # 1 115 1 115 120 119 51.0 2e-27 MIKGIGIDAVELSRIKPIVEKQGSFIQRVLTPNELTLFEKLSTKRQIEFLAGRFACKEAF SKAWGTGIGKVGLQDIEVLTEKTGAPYVANSPHNGKVFVSITHTDTMAIAQIVLESE >gi|307679226|gb|GL457021.1| GENE 40 45389 - 45655 103 88 aa, chain + ## HITS:1 COG:no KEGG:EF0847 NR:ns ## KEGG: EF0847 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 88 1 88 88 95 97.0 5e-19 MTLTSRQKKLLRCALFIFTLLLYIFPIFFKNPSLFFLLQLVWIVTIHLLQQKMKLFNLTS PLKTWIILAFFFFYIILMPFLLFLSFSI >gi|307679226|gb|GL457021.1| GENE 41 45716 - 47263 2291 515 aa, chain - ## HITS:1 COG:lin0859 KEGG:ns NR:ns ## COG: lin0859 COG0513 # Protein_GI_number: 16799933 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Listeria innocua # 2 440 3 440 516 592 69.0 1e-169 MKFKELGLAPELLSAVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML NKIDADNRVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLKDRP HIVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQTLLF SATMPPAIKNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLDVQTPE LTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAA RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYLHVIENLTKK RMTPLRPPTEKEAFKGQLSAAVETIESDLEENGLDKYLESAEALLEKYSATDLAALLLKT VAKDPADAVPVKITPERPLPSNKKGFNKNGRGGGGGNNRNRNRGGNGKGGSYRGNKNHKD GDRNYKNSDRKNKDQRGGKRHNDKKRGFVIRENAK >gi|307679226|gb|GL457021.1| GENE 42 47566 - 48939 1724 457 aa, chain - ## HITS:1 COG:SPy1420 KEGG:ns NR:ns ## COG: SPy1420 COG0770 # Protein_GI_number: 15675337 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide synthase # Organism: Streptococcus pyogenes M1 GAS # 1 455 1 453 463 425 49.0 1e-119 MKLTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGENDGHRFIESAMA NGCQAAFWGQDLVDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKD LIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQP EVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKVTQQVI TFGFSQESQLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNALIAIGIGRYFQLTD SEIQKGLATAELTKNRTEWLKAANGAEILSDVYNANPTAMGLVLDSFSKMSKVGKRIAVL GDMLELGPDSASMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYAPANIHSFKKEEK NELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK >gi|307679226|gb|GL457021.1| GENE 43 49018 - 50088 1298 356 aa, chain - ## HITS:1 COG:SP1671 KEGG:ns NR:ns ## COG: SP1671 COG1181 # Protein_GI_number: 15901506 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Streptococcus pneumoniae TIGR4 # 3 351 5 343 347 387 55.0 1e-107 MKIILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKE VLHLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVG AGVLASANAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKP ANMGSSVGISKAENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGE VVKDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS KNELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLALNRFKQRQEFYNN >gi|307679226|gb|GL457021.1| GENE 44 50229 - 50675 479 148 aa, chain - ## HITS:1 COG:SA0636 KEGG:ns NR:ns ## COG: SA0636 COG1671 # Protein_GI_number: 15926358 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 3 146 4 147 152 141 47.0 3e-34 MKIFVDGDGSPVKETVIEVAVEKALDVVIVTSVDHYSLKDYPENVSFVYVDKGADAADFK IVQLIKKGDLLITQDYGLASLVLPKGVSVLHQLGYQYTKENIDGLLEQRYFSGQIRRKGG RTKGPKPFTDQDRTTFKQALIELVKRSL >gi|307679226|gb|GL457021.1| GENE 45 50672 - 51700 1069 342 aa, chain - ## HITS:1 COG:aq_1026 KEGG:ns NR:ns ## COG: aq_1026 COG0187 # Protein_GI_number: 15606321 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Aquifex aeolicus # 16 328 23 368 792 85 23.0 2e-16 MSVAHLLTVLENDEFIERIQKRPEAFIGTTGLVGLENLLVQTINGLLEFFIEKNQGKIAI QLSRQQISFQVSSTRPLVFEQKQVDLEPPFLYLSVLQAFSKQVGISIDQEKQRTIFIYHQ GQLKKRLLLPIEETQERIEVLFWPDTQIFGTESLSYMRVLQQCQQIAMLNPGLKILLTQE EEQKNLCYYPKGLSNYLFEKDNPLTRKAAPIIQAKQTELALVQFILSKNHAPQVQKTFVN GHYPSLGGTHYEGFLDGVVAAFNQFLEEQHYSLSVTADSFLAEFDFVLAITIPKPRYTDA TKTILRNTELYEVVKEVVFDELQHYFQRHPKWLEQGRIEGNE >gi|307679226|gb|GL457021.1| GENE 46 51794 - 52804 930 336 aa, chain - ## HITS:1 COG:TM0067 KEGG:ns NR:ns ## COG: TM0067 COG0524 # Protein_GI_number: 15642842 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Thermotoga maritima # 1 323 1 325 339 155 31.0 1e-37 MKIAAFGEVMLRFTPPEYLMLEQTEQLRMNFVGTGVNLLANLAHFQLETALITKLPANRL GEAGKAALRKLGISDQWVGEKGDHIGSFFAEMGYGIRPTQVTYQNRHQSAFGISEAKDYD FEAFLAEVDMVHICGISLSLTEKTRDAALILAQKAHAYQKKVCFDFNYRPSLNTANSALF MRQQYERILPYCDIVFGSRRDLVELLGFIPREDLEGEAQETELIQRFMSQYNLEWFAGTT RSHSQNQNYLSGYLYTQNEYQQSEKRPLLNLDRIGAGDAYAAGILYGYSQNWSLEKAVTF ATVNGVLAHTIQGDIPLTTVKQVNHVLEHPNIDLIR Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:40:43 2011 Seq name: gi|307679225|gb|GL457022.1| Enterococcus faecalis TX2141 genomic scaffold Scfld89, whole genome shotgun sequence Length of sequence - 2080 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 1065 1096 ## COG5263 FOG: Glucan-binding domain (YG repeat) + Term 1080 - 1115 5.1 + Prom 1217 - 1276 10.1 2 2 Tu 1 . + CDS 1460 - 1993 345 ## lmo2277 hypothetical protein Predicted protein(s) >gi|307679225|gb|GL457022.1| GENE 1 1 - 1065 1096 354 aa, chain + ## HITS:1 COG:SP1937 KEGG:ns NR:ns ## COG: SP1937 COG5263 # Protein_GI_number: 15901761 # Func_class: R General function prediction only # Function: FOG: Glucan-binding domain (YG repeat) # Organism: Streptococcus pneumoniae TIGR4 # 35 183 21 172 318 89 39.0 1e-17 GALVALFFMPAINVDAYQVETRGNINAGWPSTVNRYIIAHDTANMDAGVENEANNMLNNW QRQEAFTQYVVGGGGRVLQVAENGRIAWGAGDANPYAHAQVELANTSNKAMFKKDYAAYV NLLRDLARQINVTFDLDDPTGYGIKTHLWVTNNLGGNHTDPYGYLASWGISKAQFAQDLQ TGLPEDGSEVIVNPGKPNQPKYKVGQHVRFTTIYKNPDAPIEQHINANTLWTQVGTITQK LNGRKNLYRIENSGKLLGYANDGDIAELWENSKPTPAKTFTIGVSEGIVLRNGAPSLLAP VYGVWPKGSTFKYDSVRVADGYVFLGGSDVNGTRIYIPVGPNDGNPSNTWGTGY >gi|307679225|gb|GL457022.1| GENE 2 1460 - 1993 345 177 aa, chain + ## HITS:1 COG:no KEGG:lmo2277 NR:ns ## KEGG: lmo2277 # Name: not_defined # Def: hypothetical protein # Organism: L.monocytogenes # Pathway: not_defined # 4 170 11 177 183 65 27.0 7e-10 MPKDLQKTYNLFLSNLDGKMAVITTPFVKLDCFYVKFDILQLPHLLGLHKIYKDSPRIIC QKLNDEVITYKHLQRHSNFGTIKDRVELFEFILEIFLEGYNDSVIYVSEADKFGSSMKLD IAFSHPHKNKILTLGLREVNDCVYAPVTFYVSKSSRPTFTKSKRAKILTLELISFNL Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:42:11 2011 Seq name: gi|307679224|gb|GL457023.1| Enterococcus faecalis TX2141 genomic scaffold Scfld91, whole genome shotgun sequence Length of sequence - 265478 bp Number of predicted genes - 273, with homology - 265 Number of transcription units - 131, operones - 68 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 40 - 99 8.3 1 1 Op 1 . + CDS 175 - 369 264 ## EF1571 hypothetical protein 2 1 Op 2 . + CDS 381 - 857 464 ## EF1572 hypothetical protein + Prom 914 - 973 9.4 3 2 Op 1 . + CDS 1001 - 1267 304 ## EF1573 hypothetical protein 4 2 Op 2 . + CDS 1303 - 3357 2310 ## COG0025 NhaP-type Na+/H+ and K+/H+ antiporters + Term 3364 - 3416 9.0 - Term 3352 - 3403 1.2 5 3 Tu 1 . - CDS 3409 - 3504 67 ## - Prom 3590 - 3649 2.6 + Prom 3363 - 3422 8.9 6 4 Op 1 1/0.306 + CDS 3468 - 5357 2234 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 7 4 Op 2 16/0.000 + CDS 5375 - 6322 1205 ## COG0207 Thymidylate synthase 8 4 Op 3 . + CDS 6340 - 6834 635 ## COG0262 Dihydrofolate reductase 9 4 Op 4 . + CDS 6858 - 8027 1164 ## COG1600 Uncharacterized Fe-S protein + Term 8155 - 8190 -1.0 - Term 7995 - 8032 2.4 10 5 Tu 1 . - CDS 8041 - 8661 651 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) - Prom 8685 - 8744 6.2 + Prom 8730 - 8789 6.0 11 6 Op 1 4/0.056 + CDS 8812 - 9054 419 ## COG4224 Uncharacterized protein conserved in bacteria 12 6 Op 2 . + CDS 9126 - 11120 2682 ## COG0021 Transketolase + Term 11126 - 11182 11.3 - Term 11114 - 11169 11.1 13 7 Tu 1 . - CDS 11172 - 12362 1098 ## COG0477 Permeases of the major facilitator superfamily - Prom 12480 - 12539 8.0 + Prom 12466 - 12525 6.9 14 8 Tu 1 . + CDS 12717 - 13577 1058 ## COG1705 Muramidase (flagellum-specific) + Term 13603 - 13646 10.3 + Prom 13685 - 13744 10.2 15 9 Op 1 . + CDS 13806 - 14738 1052 ## PROTEIN SUPPORTED gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 + Term 14755 - 14799 1.1 + Prom 14792 - 14851 6.0 16 9 Op 2 . + CDS 14877 - 15320 584 ## COG0735 Fe2+/Zn2+ uptake regulation proteins + Term 15380 - 15422 9.2 + Prom 15443 - 15502 8.5 17 10 Tu 1 . + CDS 15618 - 16958 1841 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases + Term 16974 - 17011 7.3 - Term 16962 - 16999 7.3 18 11 Tu 1 . - CDS 17006 - 17614 711 ## COG1051 ADP-ribose pyrophosphatase - Prom 17829 - 17888 11.2 + Prom 17340 - 17399 6.0 19 12 Tu 1 . + CDS 17578 - 17712 107 ## + Prom 17734 - 17793 4.4 20 13 Op 1 1/0.306 + CDS 17821 - 18291 327 ## COG0456 Acetyltransferases 21 13 Op 2 . + CDS 18311 - 18838 569 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 22 14 Tu 1 . - CDS 18893 - 19711 844 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 19895 - 19954 8.5 + Prom 19695 - 19754 7.1 23 15 Op 1 35/0.000 + CDS 19848 - 21596 225 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 24 15 Op 2 1/0.306 + CDS 21589 - 23367 234 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 + Term 23377 - 23419 1.4 + Prom 23369 - 23428 3.1 25 15 Op 3 . + CDS 23456 - 23881 496 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes + Term 23941 - 23982 5.2 + Prom 23925 - 23984 8.2 26 16 Tu 1 . + CDS 24021 - 25031 1347 ## EF1596 putative lipoprotein + Term 25077 - 25115 5.4 + Prom 25250 - 25309 10.0 27 17 Op 1 . + CDS 25334 - 25537 275 ## COG0753 Catalase + Prom 25548 - 25607 3.2 28 17 Op 2 . + CDS 25645 - 26769 1088 ## COG0753 Catalase + Term 26784 - 26839 7.4 - Term 26919 - 26977 4.0 29 18 Tu 1 . - CDS 26982 - 28415 1234 ## COG0415 Deoxyribodipyrimidine photolyase - Prom 28441 - 28500 4.1 - Term 28491 - 28534 8.6 30 19 Tu 1 . - CDS 28548 - 29393 884 ## EF1599 transcriptional regulator Cro/CI family protein - Prom 29421 - 29480 5.1 + Prom 29393 - 29452 7.5 31 20 Tu 1 . + CDS 29475 - 29537 134 ## + Term 29548 - 29591 10.1 - Term 29649 - 29695 12.1 32 21 Op 1 . - CDS 29702 - 31441 1776 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 33 21 Op 2 . - CDS 31458 - 31631 299 ## EF1601 PTS system, IIABC components 34 21 Op 3 . - CDS 31648 - 33321 1533 ## COG0366 Glycosidases - Prom 33379 - 33438 8.0 + Prom 33373 - 33432 10.5 35 22 Op 1 5/0.056 + CDS 33552 - 35024 1246 ## COG1621 Beta-fructosidases (levanase/invertase) 36 22 Op 2 . + CDS 35043 - 36023 866 ## COG1609 Transcriptional regulators + Term 36028 - 36057 1.4 - Term 36016 - 36045 1.4 37 23 Tu 1 . - CDS 36083 - 36244 219 ## EF1605 hypothetical protein - Prom 36272 - 36331 4.7 - Term 36297 - 36349 11.5 38 24 Op 1 8/0.000 - CDS 36354 - 37763 1646 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 39 24 Op 2 . - CDS 37763 - 39643 1779 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 39804 - 39863 9.5 - Term 39916 - 39968 8.4 40 25 Op 1 . - CDS 39982 - 40800 748 ## COG1409 Predicted phosphohydrolases 41 25 Op 2 8/0.000 - CDS 40802 - 41584 676 ## COG3639 ABC-type phosphate/phosphonate transport system, permease component 42 25 Op 3 9/0.000 - CDS 41581 - 42360 511 ## COG3639 ABC-type phosphate/phosphonate transport system, permease component 43 25 Op 4 15/0.000 - CDS 42357 - 43130 329 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 44 25 Op 5 . - CDS 43169 - 44092 1420 ## COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component - Prom 44302 - 44361 8.1 + Prom 44201 - 44260 13.2 45 26 Tu 1 . + CDS 44289 - 44954 522 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - Term 44768 - 44805 0.2 46 27 Tu 1 . - CDS 45049 - 46509 1394 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes - Prom 46634 - 46693 6.8 + Prom 46476 - 46535 7.2 47 28 Tu 1 . + CDS 46690 - 47241 724 ## COG4843 Uncharacterized protein conserved in bacteria - Term 47207 - 47257 11.5 48 29 Op 1 . - CDS 47300 - 48184 688 ## EF1610 hypothetical protein 49 29 Op 2 2/0.167 - CDS 48256 - 49182 1335 ## COG1227 Inorganic pyrophosphatase/exopolyphosphatase - Prom 49208 - 49267 7.5 - Term 49210 - 49273 12.2 50 30 Op 1 11/0.000 - CDS 49278 - 50042 860 ## COG1180 Pyruvate-formate lyase-activating enzyme - Term 50058 - 50092 2.0 51 30 Op 2 . - CDS 50119 - 52365 2610 ## COG1882 Pyruvate-formate lyase - Prom 52418 - 52477 9.7 - Term 52589 - 52634 14.6 52 31 Op 1 24/0.000 - CDS 52656 - 55118 2805 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 53 31 Op 2 2/0.167 - CDS 55131 - 57188 2741 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit - Prom 57312 - 57371 7.7 54 32 Op 1 . - CDS 57393 - 57821 580 ## COG1832 Predicted CoA-binding protein - Prom 57845 - 57904 6.7 55 32 Op 2 2/0.167 - CDS 57910 - 58353 548 ## COG4766 Ethanolamine utilization protein 56 32 Op 3 . - CDS 58366 - 59466 1748 ## COG3192 Ethanolamine utilization protein 57 32 Op 4 . - CDS 59479 - 59742 436 ## COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein 58 32 Op 5 . - CDS 59755 - 60354 482 ## EF1620 hypothetical protein 59 32 Op 6 . - CDS 60369 - 60995 735 ## COG4869 Propanediol utilization protein 60 32 Op 7 . - CDS 61008 - 61577 324 ## EF1622 hypothetical protein - Term 61587 - 61635 10.0 61 32 Op 8 2/0.167 - CDS 61645 - 61935 530 ## COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein - Prom 61957 - 62016 5.4 - Term 61980 - 62021 -0.5 62 33 Op 1 2/0.167 - CDS 62059 - 63537 1649 ## COG1012 NAD-dependent aldehyde dehydrogenases 63 33 Op 2 4/0.056 - CDS 63528 - 64046 752 ## COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein 64 33 Op 3 6/0.056 - CDS 64060 - 64713 982 ## COG4816 Ethanolamine utilization protein 65 33 Op 4 8/0.000 - CDS 64727 - 65638 1303 ## COG4302 Ethanolamine ammonia-lyase, small subunit 66 33 Op 5 5/0.056 - CDS 65656 - 67020 1673 ## COG4303 Ethanolamine ammonia-lyase, large subunit 67 33 Op 6 2/0.167 - CDS 67038 - 68462 1548 ## COG4819 Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition - Term 68483 - 68542 -0.7 68 33 Op 7 3/0.083 - CDS 68553 - 69986 1233 ## COG3920 Signal transduction histidine kinase 69 33 Op 8 . - CDS 69987 - 70559 726 ## COG3707 Response regulator with putative antiterminator output domain 70 33 Op 9 . - CDS 70587 - 70934 435 ## COG4810 Ethanolamine utilization protein - Prom 70954 - 71013 6.7 - Term 70957 - 71015 12.2 71 34 Tu 1 . - CDS 71094 - 72224 1067 ## COG1454 Alcohol dehydrogenase, class IV - Prom 72332 - 72391 9.7 - Term 72511 - 72549 -0.7 72 35 Op 1 . - CDS 72711 - 73292 828 ## COG2096 Uncharacterized conserved protein 73 35 Op 2 . - CDS 73289 - 73744 576 ## COG4917 Ethanolamine utilization protein 74 36 Op 1 35/0.000 - CDS 73874 - 74641 220 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 75 36 Op 2 33/0.000 - CDS 74638 - 75645 1119 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 76 36 Op 3 . - CDS 75638 - 76597 1236 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component - Prom 76618 - 76677 3.7 + Prom 76947 - 77006 7.5 77 37 Tu 1 . + CDS 77150 - 77779 764 ## COG0344 Predicted membrane protein + Term 77781 - 77831 16.3 - Term 77769 - 77819 16.3 78 38 Op 1 . - CDS 77821 - 78696 1125 ## COG2017 Galactose mutarotase and related enzymes 79 38 Op 2 4/0.056 - CDS 78730 - 79512 951 ## COG4465 Pleiotropic transcriptional repressor 80 38 Op 3 24/0.000 - CDS 79533 - 80936 1349 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 81 38 Op 4 4/0.056 - CDS 80951 - 81499 886 ## COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit 82 38 Op 5 5/0.056 - CDS 81528 - 82427 1016 ## COG4974 Site-specific recombinase XerD - Prom 82524 - 82583 8.0 - Term 82566 - 82617 4.1 83 39 Tu 1 . - CDS 82639 - 83946 1600 ## COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation - Prom 83966 - 84025 2.6 - Term 84008 - 84045 5.1 84 40 Tu 1 . - CDS 84054 - 86132 2149 ## COG0550 Topoisomerase IA - Prom 86195 - 86254 4.3 85 41 Op 1 . - CDS 86317 - 86970 576 ## COG1266 Predicted metal-dependent membrane protease - Prom 86990 - 87049 2.1 86 41 Op 2 2/0.167 - CDS 87061 - 87924 814 ## COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake 87 41 Op 3 8/0.000 - CDS 87985 - 88752 1201 ## COG0164 Ribonuclease HII 88 41 Op 4 . - CDS 88754 - 89605 972 ## COG1161 Predicted GTPases - Prom 89810 - 89869 4.4 - Term 89755 - 89802 7.2 89 42 Tu 1 . - CDS 89882 - 90823 882 ## COG1893 Ketopantoate reductase - Prom 90917 - 90976 7.9 + Prom 90874 - 90933 9.3 90 43 Tu 1 . + CDS 91000 - 91890 758 ## COG0583 Transcriptional regulator 91 44 Tu 1 . - CDS 91899 - 92951 1214 ## COG3641 Predicted membrane protein, putative toxin regulator - Prom 92974 - 93033 4.1 - Term 93017 - 93061 2.4 92 45 Op 1 24/0.000 - CDS 93094 - 94392 1615 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes 93 45 Op 2 28/0.000 - CDS 94416 - 95402 1432 ## COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit 94 45 Op 3 5/0.056 - CDS 95424 - 96410 1211 ## COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit 95 45 Op 4 2/0.167 - CDS 96427 - 97836 824 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 96 45 Op 5 3/0.083 - CDS 97842 - 98924 1233 ## COG3426 Butyrate kinase 97 45 Op 6 . - CDS 98943 - 99764 669 ## COG0280 Phosphotransacetylase - Prom 99790 - 99849 8.1 + Prom 99802 - 99861 8.0 98 46 Tu 1 . + CDS 100046 - 101080 1056 ## COG1434 Uncharacterized conserved protein 99 47 Tu 1 . - CDS 101173 - 101895 630 ## EF1665 hypothetical protein - Prom 101921 - 101980 7.9 100 48 Tu 1 . - CDS 102149 - 102694 549 ## EF1666 hypothetical protein - Prom 102716 - 102775 9.0 + Prom 102740 - 102799 4.3 101 49 Tu 1 . + CDS 102945 - 103739 947 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) + Term 103753 - 103801 13.3 + Prom 103782 - 103841 9.0 102 50 Op 1 3/0.083 + CDS 103868 - 104296 580 ## COG1846 Transcriptional regulators 103 50 Op 2 7/0.000 + CDS 104307 - 105269 1316 ## COG0346 Lactoylglutathione lyase and related lyases 104 50 Op 3 . + CDS 105282 - 105884 562 ## COG0400 Predicted esterase + Term 105891 - 105935 8.5 - Term 105879 - 105923 11.5 105 51 Tu 1 . - CDS 105963 - 106904 1126 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases - Prom 106938 - 106997 8.9 106 52 Op 1 36/0.000 - CDS 107022 - 108305 1416 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 107 52 Op 2 . - CDS 108306 - 108986 288 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) - Prom 109062 - 109121 3.4 - Term 109113 - 109173 11.2 108 53 Op 1 . - CDS 109179 - 109910 399 ## EF1674 hypothetical protein 109 53 Op 2 8/0.000 - CDS 109912 - 110766 752 ## COG1131 ABC-type multidrug transport system, ATPase component 110 53 Op 3 . - CDS 110763 - 111131 558 ## COG1725 Predicted transcriptional regulators - Prom 111165 - 111224 9.9 - Term 111198 - 111245 12.2 111 54 Tu 1 . - CDS 111280 - 111723 466 ## EF1677 putative lipoprotein - Prom 111743 - 111802 2.9 - Term 111788 - 111839 11.2 112 55 Op 1 . - CDS 111844 - 112398 586 ## COG0681 Signal peptidase I 113 55 Op 2 1/0.306 - CDS 112417 - 113850 1737 ## COG0793 Periplasmic protease - Prom 113886 - 113945 4.5 - Term 113903 - 113941 5.4 114 56 Op 1 2/0.167 - CDS 113947 - 114165 317 ## COG4479 Uncharacterized protein conserved in bacteria 115 56 Op 2 1/0.306 - CDS 114171 - 114686 659 ## COG0225 Peptide methionine sulfoxide reductase 116 56 Op 3 3/0.083 - CDS 114703 - 115347 660 ## COG4698 Uncharacterized protein conserved in bacteria 117 56 Op 4 2/0.167 - CDS 115349 - 116248 1012 ## COG2755 Lysophospholipase L1 and related esterases - Term 116261 - 116301 4.4 118 57 Tu 1 . - CDS 116352 - 117194 995 ## COG1307 Uncharacterized protein conserved in bacteria - Prom 117263 - 117322 8.3 + Prom 117189 - 117248 4.8 119 58 Tu 1 . + CDS 117326 - 117979 721 ## COG1272 Predicted membrane protein, hemolysin III homolog + Term 117994 - 118032 9.5 + Prom 118076 - 118135 7.3 120 59 Tu 1 . + CDS 118173 - 118370 235 ## EF1686 hypothetical protein + Term 118434 - 118470 8.2 - Term 118412 - 118469 15.6 121 60 Op 1 7/0.000 - CDS 118476 - 118988 868 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 122 60 Op 2 3/0.083 - CDS 118991 - 121303 2208 ## COG0608 Single-stranded DNA-specific exonuclease - Prom 121379 - 121438 3.1 - Term 121372 - 121419 7.4 123 61 Op 1 . - CDS 121458 - 121925 690 ## COG5416 Uncharacterized integral membrane protein 124 61 Op 2 4/0.056 - CDS 121942 - 122730 948 ## COG0300 Short-chain dehydrogenases of various substrate specificities 125 61 Op 3 . - CDS 122731 - 123672 1005 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III - Prom 123699 - 123758 8.6 - Term 123838 - 123878 4.2 126 62 Tu 1 . - CDS 123887 - 124453 623 ## EF1692 hypothetical protein - Prom 124477 - 124536 6.6 - Term 124531 - 124563 2.4 127 63 Op 1 19/0.000 - CDS 124574 - 124819 377 ## COG1837 Predicted RNA-binding protein (contains KH domain) 128 63 Op 2 . - CDS 124831 - 125124 493 ## PROTEIN SUPPORTED gi|227518885|ref|ZP_03948934.1| ribosomal protein S16 - Prom 125145 - 125204 4.0 129 64 Tu 1 . - CDS 125253 - 126056 682 ## EF1695 acetyltransferase - Prom 126154 - 126213 8.2 + Prom 126042 - 126101 10.5 130 65 Tu 1 . + CDS 126198 - 126752 750 ## COG0431 Predicted flavoprotein + Term 126766 - 126818 13.5 + Prom 126760 - 126819 9.9 131 66 Tu 1 . + CDS 126873 - 127625 724 ## COG0789 Predicted transcriptional regulators + Term 127666 - 127705 8.7 132 67 Op 1 8/0.000 - CDS 127730 - 129148 1965 ## COG0541 Signal recognition particle GTPase 133 67 Op 2 . - CDS 129153 - 129536 484 ## COG2739 Uncharacterized protein conserved in bacteria 134 67 Op 3 . - CDS 129575 - 130039 492 ## COG1683 Uncharacterized conserved protein + Prom 130017 - 130076 3.1 135 68 Op 1 40/0.000 + CDS 130202 - 130912 899 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 136 68 Op 2 . + CDS 130909 - 132684 1574 ## COG0642 Signal transduction histidine kinase + Term 132690 - 132728 5.4 - Term 132667 - 132724 14.1 137 69 Op 1 . - CDS 132726 - 133616 1143 ## COG0226 ABC-type phosphate transport system, periplasmic component - Prom 133643 - 133702 9.3 138 69 Op 2 . - CDS 133727 - 134905 1441 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase - Prom 134983 - 135042 7.3 - Term 135014 - 135061 11.2 139 70 Op 1 5/0.056 - CDS 135067 - 137757 2994 ## COG0383 Alpha-mannosidase 140 70 Op 2 . - CDS 137769 - 139058 1582 ## COG3538 Uncharacterized conserved protein - Prom 139093 - 139152 9.1 + Prom 139127 - 139186 9.2 141 71 Tu 1 . + CDS 139215 - 140261 969 ## COG1609 Transcriptional regulators + Term 140458 - 140494 -0.3 - Term 140351 - 140404 6.8 142 72 Op 1 . - CDS 140450 - 141379 899 ## COG0583 Transcriptional regulator 143 72 Op 2 . - CDS 141398 - 142096 543 ## COG3338 Carbonic anhydrase - Prom 142144 - 142203 5.2 - Term 142237 - 142289 2.1 144 73 Op 1 9/0.000 - CDS 142294 - 142926 956 ## COG0461 Orotate phosphoribosyltransferase 145 73 Op 2 5/0.056 - CDS 142928 - 143641 906 ## COG0284 Orotidine-5'-phosphate decarboxylase 146 73 Op 3 13/0.000 - CDS 143631 - 144569 999 ## COG0167 Dihydroorotate dehydrogenase 147 73 Op 4 3/0.083 - CDS 144566 - 145357 883 ## COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases - Term 145410 - 145457 4.2 148 74 Op 1 24/0.000 - CDS 145465 - 148647 3680 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) 149 74 Op 2 7/0.000 - CDS 148647 - 149726 1077 ## COG0505 Carbamoylphosphate synthase small subunit 150 74 Op 3 15/0.000 - CDS 149729 - 151012 1597 ## COG0044 Dihydroorotase and related cyclic amidohydrolases 151 74 Op 4 6/0.056 - CDS 151021 - 151947 1045 ## COG0540 Aspartate carbamoyltransferase, catalytic chain 152 74 Op 5 7/0.000 - CDS 151961 - 153241 1069 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 153 74 Op 6 4/0.056 - CDS 153258 - 153794 909 ## COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase - Term 153914 - 153955 7.1 154 75 Op 1 15/0.000 - CDS 154136 - 155041 350 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit 155 75 Op 2 . - CDS 155028 - 155504 526 ## COG0597 Lipoprotein signal peptidase 156 75 Op 3 . - CDS 155510 - 156214 792 ## EF1724 CBS domain-containing protein - Prom 156246 - 156305 4.4 157 76 Tu 1 . - CDS 156319 - 157989 2014 ## COG2759 Formyltetrahydrofolate synthetase - Prom 158036 - 158095 6.3 + Prom 158077 - 158136 6.3 158 77 Tu 1 . + CDS 158168 - 158374 264 ## COG1278 Cold shock proteins + Term 158452 - 158506 9.2 159 78 Op 1 . - CDS 158479 - 158940 285 ## EF1727 EbsA protein 160 78 Op 2 . - CDS 158855 - 159019 115 ## + Prom 158874 - 158933 7.2 161 79 Tu 1 . + CDS 159041 - 159448 493 ## COG0328 Ribonuclease HI + Term 159625 - 159658 -0.7 - Term 159483 - 159530 11.1 162 80 Op 1 . - CDS 159578 - 160072 661 ## COG2606 Uncharacterized conserved protein 163 80 Op 2 . - CDS 160090 - 160851 629 ## COG0710 3-dehydroquinate dehydratase - Prom 160884 - 160943 5.3 - Term 160923 - 160971 7.0 164 81 Op 1 35/0.000 - CDS 161007 - 162791 191 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 165 81 Op 2 . - CDS 162791 - 164539 200 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 164639 - 164698 3.6 - Term 164660 - 164708 7.0 166 82 Tu 1 . - CDS 164737 - 164955 367 ## COG3763 Uncharacterized protein conserved in bacteria - Prom 164991 - 165050 8.0 - Term 165095 - 165140 7.2 167 83 Op 1 . - CDS 165150 - 166043 1236 ## COG0648 Endonuclease IV 168 83 Op 2 . - CDS 166054 - 166521 336 ## EF1737 hypothetical protein 169 83 Op 3 . - CDS 166521 - 167183 586 ## EF1738 hypothetical protein - Prom 167206 - 167265 6.1 170 84 Tu 1 . - CDS 167364 - 168626 727 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 + Prom 168750 - 168809 8.3 171 85 Tu 1 . + CDS 168838 - 171216 2381 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) + Term 171252 - 171320 12.2 - Term 171248 - 171299 11.5 172 86 Op 1 . - CDS 171402 - 172502 688 ## gi|229545648|ref|ZP_04434373.1| ABC superfamily ATP binding cassette, membrane protein 173 86 Op 2 . - CDS 172495 - 173190 197 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 - Prom 173257 - 173316 4.2 - Term 173291 - 173357 16.8 174 87 Tu 1 . - CDS 173377 - 174378 1312 ## COG1609 Transcriptional regulators - Prom 174442 - 174501 5.8 + Prom 174343 - 174402 7.5 175 88 Tu 1 . + CDS 174593 - 175696 1377 ## COG0006 Xaa-Pro aminopeptidase + Term 175705 - 175762 17.2 - Term 175694 - 175746 17.4 176 89 Op 1 3/0.083 - CDS 175817 - 176404 1145 ## COG4980 Gas vesicle protein 177 89 Op 2 . - CDS 176420 - 176851 597 ## COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain - Prom 176882 - 176941 7.2 - Term 176967 - 177021 7.3 178 90 Op 1 3/0.083 - CDS 177029 - 177925 1254 ## COG1210 UDP-glucose pyrophosphorylase 179 90 Op 2 . - CDS 177937 - 178959 1499 ## COG0240 Glycerol-3-phosphate dehydrogenase 180 90 Op 3 10/0.000 - CDS 179028 - 179864 755 ## COG0682 Prolipoprotein diacylglyceryltransferase 181 90 Op 4 . - CDS 179879 - 180814 971 ## COG1493 Serine kinase of the HPr protein, regulates carbohydrate metabolism - Prom 180901 - 180960 6.3 + Prom 180938 - 180997 6.4 182 91 Tu 1 . + CDS 181024 - 181986 897 ## COG0322 Nuclease subunit of the excinuclease complex - Term 181968 - 182016 11.1 183 92 Op 1 . - CDS 182022 - 182378 313 ## EF1751 hypothetical protein 184 92 Op 2 4/0.056 - CDS 182378 - 182701 418 ## COG1983 Putative stress-responsive transcriptional regulator - Term 182713 - 182768 8.5 185 92 Op 3 . - CDS 182776 - 184377 2279 ## COG3595 Uncharacterized conserved protein - Prom 184511 - 184570 4.7 - Term 184500 - 184537 -0.7 186 93 Op 1 32/0.000 - CDS 184587 - 185264 862 ## COG0704 Phosphate uptake regulator 187 93 Op 2 7/0.000 - CDS 185279 - 186055 284 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 188 93 Op 3 41/0.000 - CDS 186048 - 186857 306 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 189 93 Op 4 38/0.000 - CDS 186874 - 187758 1001 ## COG0581 ABC-type phosphate transport system, permease component 190 93 Op 5 39/0.000 - CDS 187758 - 188678 1043 ## COG0573 ABC-type phosphate transport system, permease component - Prom 188715 - 188774 4.3 191 93 Op 6 . - CDS 188801 - 189655 1137 ## COG0226 ABC-type phosphate transport system, periplasmic component - Prom 189686 - 189745 11.0 - Term 189781 - 189829 16.7 192 94 Op 1 28/0.000 - CDS 189831 - 190715 967 ## COG2177 Cell division protein 193 94 Op 2 4/0.056 - CDS 190708 - 191394 357 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) - Prom 191425 - 191484 8.8 194 95 Op 1 . - CDS 191500 - 192483 1087 ## COG1186 Protein chain release factor B 195 95 Op 2 . - CDS 192527 - 192601 77 ## - Term 192624 - 192665 6.4 196 96 Op 1 7/0.000 - CDS 192678 - 195215 3156 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) - Prom 195286 - 195345 6.6 - Term 195417 - 195458 8.9 197 96 Op 2 6/0.056 - CDS 195471 - 196022 669 ## PROTEIN SUPPORTED gi|116333275|ref|YP_794802.1| ribosome-associated protein Y (PSrp-1) - Prom 196090 - 196149 4.5 - Term 196040 - 196085 3.1 198 97 Op 1 6/0.056 - CDS 196161 - 196796 343 ## COG1040 Predicted amidophosphoribosyltransferases 199 97 Op 2 . - CDS 196837 - 198153 611 ## COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) 200 97 Op 3 . - CDS 198168 - 198245 70 ## 201 97 Op 4 . - CDS 198253 - 198588 470 ## COG1440 Phosphotransferase system cellobiose-specific component IIB - Prom 198639 - 198698 6.1 202 98 Tu 1 . - CDS 198709 - 198996 325 ## EF1770 hypothetical protein + Prom 198944 - 199003 6.5 203 99 Op 1 . + CDS 199066 - 199800 603 ## COG1739 Uncharacterized conserved protein 204 99 Op 2 . + CDS 199790 - 200023 443 ## EF1772 hypothetical protein 205 99 Op 3 1/0.306 + CDS 200107 - 200871 246 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 + Prom 200922 - 200981 2.0 206 100 Tu 1 . + CDS 201017 - 201538 369 ## COG4708 Predicted membrane protein - Term 201524 - 201571 8.1 207 101 Op 1 . - CDS 201575 - 202309 410 ## EF1775 hypothetical protein 208 101 Op 2 . - CDS 202330 - 202659 301 ## EF1776 hypothetical protein - Prom 202694 - 202753 8.8 - Term 202725 - 202772 4.2 209 102 Op 1 17/0.000 - CDS 202787 - 204034 1431 ## COG0151 Phosphoribosylamine-glycine ligase 210 102 Op 2 10/0.000 - CDS 204053 - 205594 1563 ## COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) 211 102 Op 3 21/0.000 - CDS 205591 - 206163 299 ## COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN 212 102 Op 4 13/0.000 - CDS 206160 - 207191 761 ## PROTEIN SUPPORTED gi|149378138|ref|ZP_01895857.1| Ribosomal protein S7 213 102 Op 5 10/0.000 - CDS 207193 - 208632 1425 ## COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase 214 102 Op 6 9/0.000 - CDS 208608 - 210827 2244 ## COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain 215 102 Op 7 23/0.000 - CDS 210824 - 211498 598 ## COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain 216 102 Op 8 15/0.000 - CDS 211499 - 211750 348 ## COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component 217 102 Op 9 1/0.306 - CDS 211764 - 212477 604 ## COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase - Prom 212561 - 212620 9.2 - Term 212595 - 212623 -0.0 218 103 Op 1 29/0.000 - CDS 212629 - 213753 848 ## COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) 219 103 Op 2 . - CDS 213746 - 214234 527 ## COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase - Prom 214263 - 214322 8.7 - Term 214344 - 214376 2.5 220 104 Tu 1 . - CDS 214408 - 215223 1015 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs - Prom 215252 - 215311 5.1 + Prom 215111 - 215170 8.4 221 105 Tu 1 . + CDS 215372 - 216247 326 ## PROTEIN SUPPORTED gi|90022317|ref|YP_528144.1| ribosomal protein S15 + Term 216300 - 216349 11.5 - Term 216279 - 216341 13.1 222 106 Op 1 . - CDS 216345 - 217985 1673 ## COG4166 ABC-type oligopeptide transport system, periplasmic component 223 106 Op 2 . - CDS 218048 - 218368 438 ## EF1792 hypothetical protein - Prom 218443 - 218502 7.7 - Term 218452 - 218498 2.4 224 107 Tu 1 . - CDS 218504 - 219523 1023 ## COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase - Prom 219563 - 219622 6.6 225 108 Tu 1 . - CDS 219714 - 220166 715 ## COG4876 Uncharacterized protein conserved in bacteria - Prom 220192 - 220251 4.9 + Prom 220297 - 220356 6.3 226 109 Tu 1 . + CDS 220387 - 220956 731 ## EF1796 putative lipoprotein + Term 220982 - 221040 8.6 227 110 Tu 1 . - CDS 221003 - 221647 592 ## EF1797 hypothetical protein - Prom 221676 - 221735 4.1 - Term 221724 - 221760 3.4 228 111 Tu 1 . - CDS 221768 - 222922 970 ## COG0628 Predicted permease - Prom 222953 - 223012 4.6 229 112 Tu 1 . - CDS 223460 - 227434 4491 ## EF1800 hypothetical protein - Prom 227467 - 227526 5.4 - Term 227479 - 227530 13.2 230 113 Op 1 4/0.056 - CDS 227584 - 227991 528 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 231 113 Op 2 13/0.000 - CDS 228011 - 228820 1005 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 232 113 Op 3 13/0.000 - CDS 228807 - 229706 1239 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 233 113 Op 4 1/0.306 - CDS 229720 - 230199 546 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 234 113 Op 5 . - CDS 230196 - 231980 1792 ## COG1874 Beta-galactosidase 235 113 Op 6 3/0.083 - CDS 232043 - 232984 928 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 236 113 Op 7 . - CDS 233000 - 234031 1273 ## COG3684 Tagatose-1,6-bisphosphate aldolase 237 113 Op 8 7/0.000 - CDS 234018 - 235190 1403 ## COG2222 Predicted phosphosugar isomerases 238 113 Op 9 . - CDS 235202 - 235933 698 ## COG2188 Transcriptional regulators - Prom 236128 - 236187 9.4 - Term 236161 - 236216 17.1 239 114 Op 1 . - CDS 236255 - 236386 98 ## gi|315036698|gb|EFT48630.1| hypothetical protein HMPREF9501_00532 240 114 Op 2 5/0.056 - CDS 236319 - 237221 837 ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases 241 114 Op 3 . - CDS 237211 - 238056 801 ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases - Prom 238150 - 238209 11.6 - Term 238181 - 238226 1.1 242 115 Op 1 . - CDS 238361 - 238630 75 ## EF1812 hypothetical protein 243 115 Op 2 . - CDS 238557 - 240617 1561 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily 244 115 Op 3 9/0.000 - CDS 240659 - 242047 1162 ## COG0477 Permeases of the major facilitator superfamily - Prom 242166 - 242225 4.6 - Term 242335 - 242401 11.1 245 115 Op 4 . - CDS 242429 - 243283 720 ## COG0583 Transcriptional regulator - Prom 243392 - 243451 5.9 246 116 Tu 1 . + CDS 243675 - 244505 602 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I + Term 244597 - 244659 13.1 - Term 244585 - 244647 13.1 247 117 Op 1 . - CDS 244653 - 245507 909 ## COG3591 V8-like Glu-specific endopeptidase 248 117 Op 2 . - CDS 245556 - 247088 1584 ## COG3227 Zinc metalloprotease (elastase) - Prom 247206 - 247265 3.9 249 118 Op 1 . - CDS 247323 - 248393 773 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 250 118 Op 2 . - CDS 248323 - 248844 465 ## COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism - Prom 248882 - 248941 8.7 + Prom 248873 - 248932 10.4 251 119 Tu 1 . + CDS 249068 - 249973 583 ## COG0726 Predicted xylanase/chitin deacetylase - Term 250033 - 250101 22.1 252 120 Op 1 . - CDS 250147 - 250563 436 ## EF1844 hypothetical protein 253 120 Op 2 . - CDS 250579 - 250662 141 ## - Prom 250741 - 250800 4.1 254 121 Tu 1 . - CDS 250828 - 250995 120 ## gi|229545567|ref|ZP_04434292.1| hypothetical protein HMPREF0349_0784 - Prom 251063 - 251122 11.6 - Term 251517 - 251551 6.0 255 122 Op 1 . - CDS 251721 - 252899 896 ## COG0582 Integrase - Prom 252940 - 252999 2.1 256 122 Op 2 . - CDS 253002 - 253313 139 ## EF1848 hypothetical protein - Prom 253450 - 253509 6.2 257 123 Op 1 . - CDS 253662 - 253907 106 ## EF1849 hypothetical protein 258 123 Op 2 . - CDS 253901 - 254302 351 ## EF1850 hypothetical protein - Prom 254325 - 254384 1.9 259 124 Tu 1 . - CDS 254870 - 256705 1267 ## COG1874 Beta-galactosidase - Prom 256798 - 256857 7.3 - Term 256773 - 256830 1.5 260 125 Tu 1 . - CDS 256877 - 258139 855 ## COG1455 Phosphotransferase system cellobiose-specific component IIC - Prom 258172 - 258231 7.6 + Prom 258176 - 258235 12.7 261 126 Op 1 . + CDS 258277 - 258501 160 ## EF1853 hypothetical protein 262 126 Op 2 . + CDS 258498 - 258662 130 ## gi|227519041|ref|ZP_03949090.1| hypothetical protein HMPREF0348_2024 263 127 Op 1 2/0.167 - CDS 258756 - 259682 678 ## COG3328 Transposase and inactivated derivatives 264 127 Op 2 . - CDS 259686 - 260048 466 ## COG3328 Transposase and inactivated derivatives - Prom 260164 - 260223 4.6 - Term 260073 - 260137 5.4 265 128 Tu 1 . - CDS 260322 - 260582 123 ## gi|227519043|ref|ZP_03949092.1| hypothetical protein HMPREF0348_2026 - Prom 260654 - 260713 9.6 266 129 Tu 1 . - CDS 260789 - 260878 189 ## - Prom 260912 - 260971 8.8 + Prom 261074 - 261133 5.2 267 130 Op 1 23/0.000 + CDS 261187 - 261477 328 ## COG2963 Transposase and inactivated derivatives 268 130 Op 2 . + CDS 261513 - 262349 346 ## COG2801 Transposase and inactivated derivatives - Term 262717 - 262746 0.2 269 131 Op 1 12/0.000 - CDS 262897 - 263292 368 ## COG0853 Aspartate 1-decarboxylase 270 131 Op 2 . - CDS 263305 - 263508 206 ## COG0414 Panthothenate synthetase 271 131 Op 3 19/0.000 - CDS 263495 - 264151 369 ## COG0414 Panthothenate synthetase 272 131 Op 4 . - CDS 264166 - 264993 729 ## COG0413 Ketopantoate hydroxymethyltransferase 273 131 Op 5 . - CDS 265005 - 265256 253 ## EF1861 hypothetical protein - Prom 265311 - 265370 2.5 Predicted protein(s) >gi|307679224|gb|GL457023.1| GENE 1 175 - 369 264 64 aa, chain + ## HITS:1 COG:no KEGG:EF1571 NR:ns ## KEGG: EF1571 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 64 1 64 64 72 100.0 7e-12 MKRNIALLQSEKMKKVQALANYYQESIDLPPGKNREAVIKKINESKKEIKEINDILTDIQ KKKK >gi|307679224|gb|GL457023.1| GENE 2 381 - 857 464 158 aa, chain + ## HITS:1 COG:no KEGG:EF1572 NR:ns ## KEGG: EF1572 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 158 1 158 158 284 99.0 9e-76 MIIDGFTLLLFLFVVVMYGYFYFVRKSIVIPAAKHPTTKYLVAFFSLMILANAFSAGDKI EMIRSVLYILIIFSFLYDARGFAEDCIITHPFDNRGTAFKDIEKIVLVQKSNGIRLGYLK KGRRGVVLRFSAPLEEMVLFLSTRMNEEAEIDIIVNED >gi|307679224|gb|GL457023.1| GENE 3 1001 - 1267 304 88 aa, chain + ## HITS:1 COG:no KEGG:EF1573 NR:ns ## KEGG: EF1573 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 88 23 110 110 97 98.0 2e-19 MSEEFEKCVADLKKKYQAIPEEKRQHFAERMQKKNFLRYKKIELIKGELLRLEARRAQLE LCERSSELEEVEKKIILKKKKLLKCFDR >gi|307679224|gb|GL457023.1| GENE 4 1303 - 3357 2310 684 aa, chain + ## HITS:1 COG:L187315 KEGG:ns NR:ns ## COG: L187315 COG0025 # Protein_GI_number: 15672365 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters # Organism: Lactococcus lactis # 1 666 2 662 680 437 39.0 1e-122 MEFTFLIIVFALSITFSNIFNRIVPVIPLPIVQIIVGVLIGLTKMGQEIEFEPEVFLVMI IAPLLFREGELINLKAMMKNFGMILFLAFFGVLITLVGVGWTLHMILPTLPLAACFAFGA ALGPTDAVAVGSLSGRIDIPERSMNILSGEGLINDASGVTAFQFALAALLTGSFSPVEAA GTLVISSIGGAVVGIVLVLLKQQIVHLLETAVAKDVTGYLLIELLLPFIAYLISELIGVS GIIAAVIAGIMQASSLKKVSLFEAELSNVGESIWSMIEFTLNALVFLFLGIELSQVFSPI WIDQQYSNWFLLMVVLIISAVVFLIRFLAIFSVYTLQHGLKKVKNAMNEMLILTFGGVKG TVSLATIFILPTAINGEHFKERPLLLFITACVILVTLIGGILVLPFLTDSETEVENEESV EIDLLRDVIDVLKQQNEENPRGEMNAVIENYQDRLKELYTEQLSAERKQEVQELRTLIVS IERDGLEESLKQGEISVRSYRMYQRLITRMQRSIAKQLLSIVGFWLLFARQIISILLHPK LFFNRGEASEEEKELRNEELENIRQVFLRNSQVILKSLDNLRGVYDDDLIDFFIDGRLDL AHKFEKGEFIDSYIVHTETDYVKDLLLGFQEERRMIDHYEQSERISIIEANELRKNVNLL ESYSISGEVNNVPLKRFVKNFNKE >gi|307679224|gb|GL457023.1| GENE 5 3409 - 3504 67 31 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFWLNLLLLILSPTLPTPSILVLLIVSKIGL >gi|307679224|gb|GL457023.1| GENE 6 3468 - 5357 2234 629 aa, chain + ## HITS:1 COG:lin1989 KEGG:ns NR:ns ## COG: lin1989 COG0488 # Protein_GI_number: 16801055 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Listeria innocua # 1 629 1 630 630 637 54.0 0 MKELKVTDLTKTYGEKTLFDHLSFLIHEKDRIGLIGINGTGKTSLLNIIAGVDSGDGDLA AIQQPSDYQIGYLSQNQTFDENITIAEAVFQGDSPIIKAVKNYELALAALSENGLDEGVQ RRYTQAEEAMNKQDAWTADTNAKIILQKLGIPTLEKKIGELSGGQLKRVSLAQVLIEAPD LLLLDEPTNHLDYETIEWLENFLNNYRGAVLMVTHDRYFLDRVTNRIFELSFGKLYEYKG NYETYVMEKAERERVAVEQEEKRKRLFKQELAWMRAGVQARGTKQQARIDRFQDLKENLH QVQTNGTLEADFATQRLGKKVLEIKEGNYAIDHKQLLKDFNLLIQANDRIGITGKNGAGK STLLNILAGRIPLESGLYSIGETVRIGYYTQQNEEMDPNQRMIAYLQEAAEEVKRSDGSS VGVAEMLERFLFPRFMHGTLIGKLSGGEKRRLYLLKLLISQPNVLLLDEPTNDLDIDTLT ILEDYIQTFKGAVIAVSHDRYFLDKTMDKLLVFQGNGQILSFYGTMSEYLANQKEQEKVK EKPLNKPLKEASTEKKEKTKLTYMEQKEWATIEEDITQLETKLETLTEEMNHQGDDFVRL QELQEAVTATEQLLEEKMNRWEYLSEYAD >gi|307679224|gb|GL457023.1| GENE 7 5375 - 6322 1205 315 aa, chain + ## HITS:1 COG:lin1988 KEGG:ns NR:ns ## COG: lin1988 COG0207 # Protein_GI_number: 16801054 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate synthase # Organism: Listeria innocua # 5 315 4 314 314 478 71.0 1e-135 MEEAYLALGKKILEEGHFKEDRTGTGTYSLFGYQMRFDLAKGFPLLTTKRVPFGLIKSEL LWFLKGDTNIRYLLERNNHIWDEWAFERYVKSADYQGPDMTDFGHRVLQDPAFAEQYKEE HQKFCDTILNDAEFAEKYGELGNIYGAQWRHWETKDGSFIDQLANVIEMIKTNPDSRRLI VSAWNPEDVPSMALPPCHTMFQFYVNEGKLSCQLYQRSADVFLGVPFNIASYALLTHLIA HETGLEVGEFVHTLGDAHLYQNHVEQMQEQLSREVRSFPTLVLNPDKASVFDFDMEDIKV EGYDPHPTIKAPIAV >gi|307679224|gb|GL457023.1| GENE 8 6340 - 6834 635 164 aa, chain + ## HITS:1 COG:BH3450 KEGG:ns NR:ns ## COG: BH3450 COG0262 # Protein_GI_number: 15616012 # Func_class: H Coenzyme transport and metabolism # Function: Dihydrofolate reductase # Organism: Bacillus halodurans # 1 164 1 162 163 148 45.0 5e-36 MLAAIWAQDEQGVIGKEGKLPWHLPNDLKFFKEKTIHNTLVLGRATFEGMGCRPLPNRTT IVLTSNPDYQAEGVLVMHSVEEILAYADKYEGVTVIGGGSVVFKELIPACDVLYRTMIHE TFEGDTFFPEIDWSVWEKVATVPGVVDEKNLYAHDYETYHRNDK >gi|307679224|gb|GL457023.1| GENE 9 6858 - 8027 1164 389 aa, chain + ## HITS:1 COG:lin0933 KEGG:ns NR:ns ## COG: lin0933 COG1600 # Protein_GI_number: 16800004 # Func_class: C Energy production and conversion # Function: Uncharacterized Fe-S protein # Organism: Listeria innocua # 4 371 13 374 380 394 53.0 1e-109 MPTLKEKIIQESQRLGIDKIGFTHAEPFIELEDSLHEQRERGYNSGFEHQNVEERIYPEK TFEHPKSIISIALAYPTKAQGKMPRDEKRGQFARASWGIDYHHILQDRLQKLIAFIEEQA ATEAEKEHWRFRPQVDTGEYVDTAVAQRAGLGFIGKNGLLITEEFGSFVYLGEVTTNIQF EPDEPVPNGCGDCTRCITGCPTGALLGDGRMNAQKCLSYQTQTKGMMPEEYRKKMRNVIY GCDICQLVCPYNKGKDFHFHEEMEPKIEEVYPKLAPLLTISNKEFKQQFGHLASSWRGKK PLQRNALIALANLGGREAIPQIILCLNDQRPVIRGTAAWSLGQLAKREPEQSLEALNYLL SVETEAEVIEEAQKAIYLLTSKKGSRSTE >gi|307679224|gb|GL457023.1| GENE 10 8041 - 8661 651 206 aa, chain - ## HITS:1 COG:lin1340 KEGG:ns NR:ns ## COG: lin1340 COG1974 # Protein_GI_number: 16800408 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Listeria innocua # 4 204 2 202 204 245 62.0 4e-65 MAKRTETRQLEVLKYIYEQVELKGYPPTVREIGKAVDLSSTSTVHGHLARLEKKGLILRD PTKPRAIELTPEGLEKIGIQPTTIPMLGVVTAGEPILAVEEASDFFPLPPDLRTEENALF MLMIRGESMINAGILDGDQVIVRKQSNANNGDIVIAMTDEDEATCKRFFREVDHIRLQPE NDALAPILLDNVTILGKVVGLYRNHI >gi|307679224|gb|GL457023.1| GENE 11 8812 - 9054 419 80 aa, chain + ## HITS:1 COG:SP1473 KEGG:ns NR:ns ## COG: SP1473 COG4224 # Protein_GI_number: 15901323 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 2 79 1 78 85 76 64.0 1e-14 MLSKEKIARINELANKAKVEELSAKEKVEQQELRKEYLEAFRGGMRHHIEGMKVVDQEGT DVTPEKLKKIQREKGLHNRK >gi|307679224|gb|GL457023.1| GENE 12 9126 - 11120 2682 664 aa, chain + ## HITS:1 COG:SPy1676 KEGG:ns NR:ns ## COG: SPy1676 COG0021 # Protein_GI_number: 15675539 # Func_class: G Carbohydrate transport and metabolism # Function: Transketolase # Organism: Streptococcus pyogenes M1 GAS # 2 664 53 711 711 927 70.0 0 MFDKTDQLGVNTIRTLSIEAVQKANSGHPGLPMGAAPMAYALWTKHLKVNPTTSRNWVDR DRFVLSAGHGSAMLYSLLHLSGYNVTIDDLKNFRQWDSKTPGHPEVHHTDGVEATTGPLG QGIAMAVGMAMAEAHLAATYNRDSFPIMDHYTYAICGDGDLMEGVSQEASSMAGHMKLGK LIVLYDSNDISLDGPTSKAFTENVGARYEAYGWQHILVKDGNDLDEIEAAIEAAKAETDK PTLIEVKTVIGYGAPKEGTSSVHGAPIGEEGITAAKAVYGWEYPDFTVPEEVAARFKETM IDEGQKAEEAWNEMFKNYEHAHPELAKQFKEAFANQLPEGWEQELPKYELGTSAASRVTS KETIQAISKVVPSFWGGSADLSASNNTMVAAEKDFEPGQYEGRNIWFGVREFAMAAAMNG IQLHGGSHVYGGTFFVFTDYLRPAIRLAALQKVPVTYVLTHDSVAVGEDGPTHEPIEQLA SVRCIPNVHVIRPADGNETVAAWKIAMNSTETPTILVLSRQNLPVLEGTLEHASDSVQKG AYVLSPQKGEQPAGILIATGSEVNLAVEAQAKLAEEGIDVSVVSMPSFDLFEKQSAEYKE SVLPKAVTKRVAIEAAASFGWERYVGTEGKTITIDHFGASAPGGLVLEKFGFTPENVVNT YKSL >gi|307679224|gb|GL457023.1| GENE 13 11172 - 12362 1098 396 aa, chain - ## HITS:1 COG:CAC0560 KEGG:ns NR:ns ## COG: CAC0560 COG0477 # Protein_GI_number: 15893850 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Clostridium acetobutylicum # 3 394 43 430 441 286 42.0 7e-77 MKKQQSGLTNQVTFLLALTCGVVVANMYYIQPIGTQIAQAFQVSIGSIGFVTMLTQLGYA LGLLFLVPLGDVVDRRKLIIRVAALSSLSLSAAFFAPSFFLFALSSFFIGLLSIVAQIII PYAAVMAGPANRGKVTGRMLGGLLTGILLSRTISGFIASAASWRTVYLIAVIFVLALVVL LQLKLPKTVIHTQTSNRLTYLGSLKSLPKLIKSQPLLREATVNGFFMFATFSIFWSTLIF FVSSPAYYWGPKEVGILAIFGLSGAFVAPIIGRLSDYYPERKIVLIGLLMQFGSFILLFL GGTHVVLLILAIIVLDIGTQFGQVANQTRVQNLGEEASNRNNTVFMFFYFIGGSLGSLIG TLMWQNYGWSGVTLTGIGFQLFALFFHFMLFAPKKK >gi|307679224|gb|GL457023.1| GENE 14 12717 - 13577 1058 286 aa, chain + ## HITS:1 COG:lin2838_1 KEGG:ns NR:ns ## COG: lin2838_1 COG1705 # Protein_GI_number: 16801898 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Listeria innocua # 52 205 154 308 340 147 60.0 2e-35 MSEQLTRSSKHIQKALKKQKAYKRATAVAGTSMILAPVVGAAVPAQAESSQQAFINEIGN SAAAVANSNDMYASVMIAQALLESSYGSSGLASAPNYNLFGVKGSYNGQSVYMPTKEYLD GQWVTVTAAFRSYNSYAESFQDHANVIRSTAFGDTYHYSGVWKSNTSSYRDATAALAGSY ATDPGYAEKLNWLIEAYNLTQYDWGAPVAQTTSYSDTTGTVDTTIDTAASATATAETVAS QSYTVANGDTLWDIAARFGTTVDNLMSLNGLTLDSVLSVGQTIQIG >gi|307679224|gb|GL457023.1| GENE 15 13806 - 14738 1052 310 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP6-BS73] # 8 308 6 306 308 409 67 1e-113 MTKGYVKSVTELIGQSPVVKLKRMVPEGAADVFVKLEFFNPGGSVKDRIALSMIQQAEAD GRLKPGQTIIEPTSGNTGIGLAMVGAALGYPVKIVMPDTMSIERRKLMQAYGADLLLTPG AEGMKGAIAKATALAEEHGYFMPLQFNNPANPMVHEQKTGKEIVDVFGKRGLDAFVSGVG TGGTVTGVGHELKRIFPDIEIVAVEPTESPVLEGGEPGPHKIQGIGAGFVPDVLDTTVYQ KVAAVSSEDALETARLMGPKEGILVGISAGAAIKAAIDLAVELGAGKRVLALVPDNGERY LSTALYEFPE >gi|307679224|gb|GL457023.1| GENE 16 14877 - 15320 584 147 aa, chain + ## HITS:1 COG:lin1791 KEGG:ns NR:ns ## COG: lin1791 COG0735 # Protein_GI_number: 16800859 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Listeria innocua # 1 146 3 148 148 207 63.0 4e-54 MDNVLVKNALAELKEANIRITPQRYAILEYLIENHTHPTADEIYRALEDHFPNMSVATVY NNLRLFTEIGFVQEMSYGDASSRFDFSSKKHYHVICQKCGKIVDFHYPGLEDVEMAASKL TGFEINEHRLELYGLCPDCQQAQQENV >gi|307679224|gb|GL457023.1| GENE 17 15618 - 16958 1841 446 aa, chain + ## HITS:1 COG:SPy1150 KEGG:ns NR:ns ## COG: SPy1150 COG0446 # Protein_GI_number: 15675127 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Streptococcus pyogenes M1 GAS # 2 442 3 454 456 368 43.0 1e-101 MKVVVVGCTHAGTSAVKSILANHPEAEVTVYERNDNISFLSCGIALYVGGVVKNAADLFY SNPEELASLGATVKMEHNVEEINVDDKTVTAKNLQTGATETVSYDKLVMTTGSWPIIPPI PGIDAENILLCKNYSQANVIIEKAKDAKRVVVVGGGYIGIELVEAFVESGKEVTLVDGLD RILNKYLDKPFTDVLEKELVDRGVNLALGENVQQFVADEQGKVAKVITPSQEFEADMVIM CVGFRPNTELLKDKVDMLPNGAIEVNEYMQTSNPDIFAAGDSAVVHYNPSQTKNYIPLAT NAVRQGMLVGRNLTEQKLAYRGTQGTSGLYLFGWKIGSTGVTKESAKLNGLDVEATVFED NYRPEFMPTTEKVLMELVYEKGTQRIVGGQLMSKYDITQSANTLSLAVQNKMTVEDLAIS DFFFQPHFDRPWNYLNLLAQAALENM >gi|307679224|gb|GL457023.1| GENE 18 17006 - 17614 711 202 aa, chain - ## HITS:1 COG:L167097 KEGG:ns NR:ns ## COG: L167097 COG1051 # Protein_GI_number: 15672146 # Func_class: F Nucleotide transport and metabolism # Function: ADP-ribose pyrophosphatase # Organism: Lactococcus lactis # 1 192 1 188 200 137 43.0 1e-32 MDYLNTYKRLLALADAGLFYGKDAFDQERYQELRELTLQLVSTTGHEAAVLPDLEKILTK EEGYPTPKVDVRGLIKKENRFLLVEDLRTKEWSLPGGYAEIGCSPKENIEKEVLEETGLV VTAKELLAVYDTDKRKDIPQLFQYYKMIFSCEILENHPFEKNIETSNCAYFSLDNLPPLS IKRTTKEQLMALMNQTTGALSD >gi|307679224|gb|GL457023.1| GENE 19 17578 - 17712 107 44 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLATAYRCSDNPYTHAPHRLNTFSLTEKNKGRADLARKGVGLRK >gi|307679224|gb|GL457023.1| GENE 20 17821 - 18291 327 156 aa, chain + ## HITS:1 COG:SP0640 KEGG:ns NR:ns ## COG: SP0640 COG0456 # Protein_GI_number: 15900546 # Func_class: R General function prediction only # Function: Acetyltransferases # Organism: Streptococcus pneumoniae TIGR4 # 80 155 5 80 81 77 48.0 8e-15 MKEFIIIREKNADKKTQAAQEVLFNLPEWFGLEKETRKYIDIASTLPMWVAKDVENKILG FITLSETSKDTVEIHCMAVKKRYHRKGIGKLLIESVETYSKNNYFFIQVKTVDEGNYSVY DHTIRFYESLGFKRLEVFPTLWDAWNPCLILIKHLI >gi|307679224|gb|GL457023.1| GENE 21 18311 - 18838 569 175 aa, chain + ## HITS:1 COG:BS_paiA KEGG:ns NR:ns ## COG: BS_paiA COG0454 # Protein_GI_number: 16080268 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 1 171 1 171 172 154 45.0 9e-38 MSVFIRECTVADVPELEAICQETFADTYGDGENEEDLQAHYERKFSPAVLESEILHKDSQ YFFAFYNNELAGYVKLNHGDAQITYQHPQALQVERIYIRKSFKRLGLGKHLITKAIELAE EAEKETVWLGVWEHNHPAQKFYQSLGFVKTDEHDFYMGNERHTDYTMTKQLKEST >gi|307679224|gb|GL457023.1| GENE 22 18893 - 19711 844 272 aa, chain - ## HITS:1 COG:lin0157 KEGG:ns NR:ns ## COG: lin0157 COG2207 # Protein_GI_number: 16799234 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Listeria innocua # 5 271 5 271 277 221 43.0 2e-57 MNYTNSRTFNPEILYAFDPWNEETHPYNCHHHEFLEISILLEGESEYIVQGQQYHATAGT VFLFNPRTEHGEQQKAGTYSHQLHIGISNLYLEGLARNVFPNKSALLDLSHLHGAFLEKA WQIVHELNHQEVESALQIKALVIELLVYILRSLAVDQENKIETRLSKTEKRKRNLVNHTI YYLETHHDEEITLEQLAEMLYVTPTYLSKTFKAATGVGPINYLIQIRLNHAKELLKNDSL SVKEVAKTVGYEDAYHFSKLFKKYYGKSPSQF >gi|307679224|gb|GL457023.1| GENE 23 19848 - 21596 225 582 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 295 557 247 507 563 91 27 4e-17 MNSFEWIWQYAKKNKNKLLLAVIFVVINAILIVIIPLLTGRIVDQVINQGKIEELVPILG TMIGVTVIRTVVRYSYQVLFESVGQSALFDLRKDMYVKLQELDFDFFNHTRVGDIMARMT GDTDAIRHFVSWVTYNLLECILWFIAAVIVMGTINWQLMLALILITPLIFLLTQKMSKES HPVFFEIRESFSRLNSMVEENIGGNRVVKAFSQEPYEIEKFNKHNEDYKKWNMASADVSK KYLPWLDGFAGSLNVIALVLGGLFVIQGRMTIGDLVAFNGFLWMLNMPMRMSGWLINDVQ RFTASSIKIRQLLATKPKIPIAREKEAEPIQGYVTFDHVSFHFSDDPETPILSDVSFSAK PGETIGILGETGSGKTTLVNLIARFYDPTKGTVYIDGKDAKSYSVRKLRENISMVMQDVF LFSNTIEDNIAFGNTLANLEQVQMMAEIADAHSFISRMPEGYATIVGERGVGLSGGQKQR ISLARALTKDPAILILDDTTSAVDMETESKIQKELGRLTEKKTTFIIAHRISSVREANLI LMMEKGRVVESGTHSELVEQKGKYFDVYQKQLGLTKEGESRG >gi|307679224|gb|GL457023.1| GENE 24 21589 - 23367 234 592 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 336 574 6 251 329 94 28 3e-18 MARNTFDVDETLEKEFNWSHYKRLGAYIKPYKKAVFKTLFVIILANLASMLGPYFTKIAI DQVIPQKNLSLLLILGAIFLFSLVIIGWCMRYRIYAITEIGQDILKDMRFSIFEHLQKLP FSYFDSRPHGKILIRVVNYINTLSDLLSNGLINLISDLFNVIITLIFMLFIDVKLTLYSL LLLPVLFVMVLFIQGKQRKAYQELSNKQSNLNAYIHESISGIKITQSFAREDENFQIFNE VSEEYRQSFMKAVRVQYLLWPAVQNISVITTCFIYFVGIRQLGVSVTTGTLIAFIGYINN FWNPVINIGNFYNSLITATAYLERIFETMDVVPEIQDAPHAIALPPIKGTVDFQHVYFRY EEGKNILTDVSFHIEPGQTIALVGPTGAGKTTIINLLSRFYDVNEGAVKIDGYDVRDVTL RSLRKQMGVMLQDTFIFSGTIIENIRYGNLTATEEEVIQAAKIVRAHDFIKDLKDGYETV VEERGSTLSAGQRQLISFARALLADPKILILDEATSSIDTKTEELLQEGLQQLLKGRTSF IIAHRLSTIKNSDKIFYIDGGRIVEEGSHDQLMAKHALYHHLYQSQYDLLKS >gi|307679224|gb|GL457023.1| GENE 25 23456 - 23881 496 141 aa, chain + ## HITS:1 COG:SP0740 KEGG:ns NR:ns ## COG: SP0740 COG0494 # Protein_GI_number: 15900635 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Streptococcus pneumoniae TIGR4 # 1 138 1 142 151 89 38.0 2e-18 MNRNFEVELTTLCMIRNQKNEILVQERQKKDWPGWTFPGGHVEKNEGMETAMVRELLEET GLVLKPQLVGVAEWLNDCSGARELATLFIAETADELPEETEQPLFWVTEKELREGPLAGS LAELFPVFFGEKQFYFKNNTA >gi|307679224|gb|GL457023.1| GENE 26 24021 - 25031 1347 336 aa, chain + ## HITS:1 COG:no KEGG:EF1596 NR:ns ## KEGG: EF1596 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 336 1 336 336 525 99.0 1e-147 MLKRKVGIVAGVFCSALLLTGCGKSAKDEFIQGIGNQNAQESGVWDFSMSISDMKFSQED SAQTNPMIGMLITQIKDASLSGKIQVDAKKEKAFNLEMKLKAMGMDVPISLVGSVDNEGK EPKLYLATDMMEYIVAVADSMTDGAIDSSQLDTEKLKGKYIDLLAMNEESTKEWQDTIKE YQESEKERKQSAKEYKEFLEGLDKDTFEKKGDTITHTFTKKELQKLIKITTETSEKGKEQ DPFEKIKDVSAKVSVNTKENKTNMLINVKPQQDKNVDMGLESLSSKISITQKAKKATISM PKKENILSEQEVEKIFSDSTSMTGLSTEDTTVAINQ >gi|307679224|gb|GL457023.1| GENE 27 25334 - 25537 275 67 aa, chain + ## HITS:1 COG:BS_katA KEGG:ns NR:ns ## COG: BS_katA COG0753 # Protein_GI_number: 16077947 # Func_class: P Inorganic ion transport and metabolism # Function: Catalase # Organism: Bacillus subtilis # 1 67 1 67 483 114 80.0 6e-26 MKNQHLTTSQGSPVGDNQNSLTAGEFGPVLIQDVHLLEKLAHFNRERVPERVVHAKGAGA HGVFKVS >gi|307679224|gb|GL457023.1| GENE 28 25645 - 26769 1088 374 aa, chain + ## HITS:1 COG:BS_katA KEGG:ns NR:ns ## COG: BS_katA COG0753 # Protein_GI_number: 16077947 # Func_class: P Inorganic ion transport and metabolism # Function: Catalase # Organism: Bacillus subtilis # 1 370 105 475 483 497 64.0 1e-140 MRDPRGFALKFYTDEGNYDLVGNNTPIFFIRDAIKFPDFIHSQKRNPRTHLKSPEAVWDF WSHSPESLHQVTILMSDRGIPLSFRHMHGFGSHTFKWVNAAGEVFFVKYHFKTNQGIKNL ESQLAEEIAGKNPDFHIEDLHNAIENQEFPSWTLSVQIIPYADALTMKETLFDVTKTVSQ KEYPLIEVGTMTLNRNPENYFAEVEQVTFSPGNFVPGIEASPDKLLQGRLFAYGDAHRHR VGANSHQLPINQAKAPVNNYQKDGNMRFNNGNSEINYEPNSYTETPKEDPKAKISSFEVE GNVGNYSYNQDHFTQANALYNLLPSEEKENLINNIAASLGQVKNQEIIARQIDLFTRVNP EYGARVAQAIKQQA >gi|307679224|gb|GL457023.1| GENE 29 26982 - 28415 1234 477 aa, chain - ## HITS:1 COG:lin0597 KEGG:ns NR:ns ## COG: lin0597 COG0415 # Protein_GI_number: 16799672 # Func_class: L Replication, recombination and repair # Function: Deoxyribodipyrimidine photolyase # Organism: Listeria innocua # 1 466 1 461 467 527 56.0 1e-149 MKRVMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQESANHNAFFASLASLK ERIDQEAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFEENNIQ SFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSACLFPEE EAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLSTFLRTG ELSIRTIWQELASVPSSLSKETFKKELAWRDFYNMIYSAFPQQKEEAIQEKFRYIQWIND PEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKM LIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKY IHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKEIHQEMNNPTFQ >gi|307679224|gb|GL457023.1| GENE 30 28548 - 29393 884 281 aa, chain - ## HITS:1 COG:no KEGG:EF1599 NR:ns ## KEGG: EF1599 # Name: not_defined # Def: transcriptional regulator Cro/CI family protein # Organism: E.faecalis # Pathway: not_defined # 1 281 1 281 281 487 99.0 1e-136 MKVAGDKIKQARKLKKITQSELANGICTQATISNIENRNLCDSLDIFSSICLRLDLEVEE CMMISEEKKIENLLNKVEDLSLRLFHLEAYKLLQEVPEGLILSNNELTTKLLYYKGITCL LGKKDKAEALFYLYRGAEIDRKVNIYNILSLNALGTLYELEKDMRKAQVYYEKSLQELEQ FKLECSLERCRIYYNSAKFYSEIKDYQKSVILSEKGIQICRDKHSIYLLDYLLYEKAFNK QMLGEDTADDYRQAYYFTQFFGNTEVLQYIEKDMKAFNISY >gi|307679224|gb|GL457023.1| GENE 31 29475 - 29537 134 20 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFDLLALLTGTSTYGNVPHV >gi|307679224|gb|GL457023.1| GENE 32 29702 - 31441 1776 579 aa, chain - ## HITS:1 COG:SPy1815_2 KEGG:ns NR:ns ## COG: SPy1815_2 COG1263 # Protein_GI_number: 15675645 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Streptococcus pyogenes M1 GAS # 40 393 13 360 385 236 38.0 1e-61 MILGTGIVTKVYDEIEKLGINVVSKAEQTAILKNNETGMRKTMRILSEIFIPIVPVIAAT GLFLGLKGVIFNDTFLQLFGASVANIPESFQQIVSVITDTVFAFLPALIVWSTFKAFNAT PVIGIVIGLMMVSPILPNAYAVATPDSGVKAIMAFGFIPVVGAQGSVLSAIAAGIIGAKI ELFFRKKMPNILDQIFTPFMTMLITFLIMILGIGPILHTVELGMVDVVQWLIGLPLGLGG FVIGASYPLMVLIGIHHTLTMVETSLLANTGFNALITICAMYGFANVGSCLAFAKKAQDS KVKSTAIGSMLSQLFGVSEPVLFGLLIRWNLKPLLCVLFTSGLGGAILAIFHIQSNSYGL AVIPSFLMYIYSAHQLVIYLLVALLSVGVCYALTSLFAIPQEVLISDKVIEEEEREVFEM QHNTLDEQLFSPVTGYAMNLTAVNDPVFSSEMMGKGLAIMPTANKVYAPADGLLNLVAET GHAYGIQTDAGAEVLIHIGIDTVTLGQEVFQTQVTQGHRVKKGDLLGTFDRKAIKEAGLD STVMVIITNTSSYLSVEPMMSDHNEITPEQIILNLNTPN >gi|307679224|gb|GL457023.1| GENE 33 31458 - 31631 299 57 aa, chain - ## HITS:1 COG:no KEGG:EF1601 NR:ns ## KEGG: EF1601 # Name: not_defined # Def: PTS system, IIABC components # Organism: E.faecalis # Pathway: Starch and sucrose metabolism [PATH:efa00500]; Phosphotransferase system (PTS) [PATH:efa02060] # 1 56 1 56 642 117 98.0 2e-25 MAENYQQAAKDIIQLIGMDNIISVTHCQTRLRFILKDHEQVDGKQLEKIDLVKGAFL >gi|307679224|gb|GL457023.1| GENE 34 31648 - 33321 1533 557 aa, chain - ## HITS:1 COG:BH3868 KEGG:ns NR:ns ## COG: BH3868 COG0366 # Protein_GI_number: 15616430 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Bacillus halodurans # 1 510 1 507 553 435 43.0 1e-121 MNRNWWQKEVAYQIYPRSFSDSNNDGIGDLQGIIQKLDYLENLGITLIWLSPMYPSPMAD NGYDISDYYGISSDFGTMADFDELIEEAKKRNIKVILDLVVNHTSDEHAWFQDVLKNPQS RFRDFYIIKEGREAPTNWRSNFGGSVWEKLPGEDAYYFHAFHKKQPDLNWENPELRKEIY QMIRFWLNKGIAGFRVDAINFIKKDLTWTNLPADGADQLAKVTKASRNMPGMSDFLNELK EKAFAGFDIVTVAEAAGVNYPNLSEFIGETGYFDMIFDFKWADLDVKSGSEWFYRINWSW NDLRTLIFKQQEAMQEAGWSANFIENHDQPRATTKYLKEQAQQPNAVKTFGAMYFFLRGT PFIYQGQELGMTNFERGSIDEFDDISSIDQYYRAIKEGFTPKEALSLVNLRSRDNARTPF PWNDSMYGGFSSVKPWLGMVDNYKEINAEAEIKNSQSIFHFYKRMIAFRQKSPYTDILLY GTFEGLSNLPDNVIAYKRKLNEKTIYAFFNFGEAVPIPHYLVNGTVIFDTQSEEREQLVQ QGTLLKSYQGLLITINE >gi|307679224|gb|GL457023.1| GENE 35 33552 - 35024 1246 490 aa, chain + ## HITS:1 COG:SP1724 KEGG:ns NR:ns ## COG: SP1724 COG1621 # Protein_GI_number: 15901557 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-fructosidases (levanase/invertase) # Organism: Streptococcus pneumoniae TIGR4 # 7 486 2 478 484 456 47.0 1e-128 MSSIMNQWTDELRYAPYSSWTSAHLENLTSIIAQSSWRFKYHIQPQTGLLNDPNGFSYFN NQWHLFYQAFPFGSVHGLKSWAHLTSSDLIHWDYEGIALYPDSEYDSHGVYSGSALPIDN QLCLFYTGNVRDQTWQRFAYQNIAWLNSLGAITKESTPFLPIDPNYSSHFRDPMVFPYQE GLVLLIGASDLNGQGKIVVYFSKDRNVHNFHQLGELTFTNQELGYMVECPNLVFIDGQPV LLFCPQGLSPSVKSYQNIYPNMYTLAETFDLENLSLVQAGPFENLDEGFDVYATQAFNAP DGRALAVSWIGLPEITYPSDVEGWANGLSLVKELTIHNGKLFQYPVSETEMLRQSATILS NGCHFLSTASFELEVDIPKNEIAFIRLLANETGSKGLLITIDTIHGKITLDRTFAGQPFA EKYGTIRETKIRKNKSVQLTIFVDCSVAEIYVNKGEKTMTGRFFPDKAQQYLHLSKTAKA CFYELENTNN >gi|307679224|gb|GL457023.1| GENE 36 35043 - 36023 866 326 aa, chain + ## HITS:1 COG:SP1725 KEGG:ns NR:ns ## COG: SP1725 COG1609 # Protein_GI_number: 15901558 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 1 320 1 315 321 335 54.0 7e-92 MVVKLTDVAKLAGVSPTTVSRVINNYGYLSQKTIDKVHQAMGELNYQPNGLARSLQGKST QLIGLVFPSVSHPFFGELIETLERKLFVQGYKVILCDSEKDPEKERAYLRMLAANKVDGV ITGSHNLAINEYENVSLPIVSFDRFLAPGIPIVSSQNFQGGQKATEALFASGAQKIAIIT GANNTGAPSDYRLAGYKQTMEKYGAEKTILQIDNGTSTTLKNLEIERLLQNKTVDGIFCT DDLTAITVMNIAQKLKISIPEELKVIGYDGTKLIKRIAPQLSTIVQPIDEMCDVMIDLLL RRMKDPDVALEENYPIPIQLSLSESC >gi|307679224|gb|GL457023.1| GENE 37 36083 - 36244 219 53 aa, chain - ## HITS:1 COG:no KEGG:EF1605 NR:ns ## KEGG: EF1605 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 53 1 53 53 76 98.0 4e-13 MNNYDLWKWAAGKRTEKDKNETYSAKNWWYVLLMLGVFVGIMLLYYLISVLWN >gi|307679224|gb|GL457023.1| GENE 38 36354 - 37763 1646 469 aa, chain - ## HITS:1 COG:CAP0010 KEGG:ns NR:ns ## COG: CAP0010 COG2723 # Protein_GI_number: 15004715 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Clostridium acetobutylicum # 2 465 6 466 469 419 45.0 1e-117 MVKQFKNDFLWGASSSAFQIEGAWNEDGKGLTVADYNSFKKSAVQADTKVASDFYHRFKE DIALMKELGLKTYRFSLSWARIIPTGDGEINQAGIDFYNAVIDTLLENDILPFVTLYHFD LPFALVEKYNGWADRRCVSAFQRYAQVCYQAFGDRVKNWQVTNEQNLMIRVDERMNMYDV APENVEKIRAQMDYHMFVAHALATNDCHQLVAGGKVGPSVSSTMTYPSSNKPEDVWAARM NDNFKTNYALEMYCLGEYPGYYQEYLTKCGIYPETQPEDQAILKAAKPDFIALNYYRTLV ASYLPTDEQHPLGTKEKDIDFDLYGYFKIEKNQHLKTSKYGAQIDPTGLRLVLNDYYRQY RLPLIITENGLGTPDRLTEDGKVHDDYRIAYLHDHIAACHAAISDGVELFGYCPWSVMDI LSSHQGFKKRYGFIYVNREDHELKDLRRIKKDSFYWYQSVIKNNGLPEE >gi|307679224|gb|GL457023.1| GENE 39 37763 - 39643 1779 626 aa, chain - ## HITS:1 COG:BH0296_2 KEGG:ns NR:ns ## COG: BH0296_2 COG1263 # Protein_GI_number: 15612859 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Bacillus halodurans # 98 472 2 367 368 300 46.0 7e-81 MDYQAIAKEILKDVGGKDNIVDVTHCYTRLRFVLKDTKQANKEALLQTEGVISVVESGGQ YQVVLGNKVAHVYNALEPLLAQQLTTKTSTEEKNSLGNRILNTVAAIFTPVVPAIAASGM LKGILAIAVMVANNFYQVDLKPLNTYIILSAASDALFYFMPVILGYSAAKVFKTNEYIAM VIGATLCYPTIVSLMTEESAVTLFGLHVTKANYVSTVIPIILAIFILAYVQRFLEKVIPE VLKIIMVPTLSLLLMIPATLLLFGPIGIYLGDGVNWLYYYIMNLSPILLGGFIGGIWCVL VIFGAHRGLVPIGINDVARTGRQNLLAFAGAANFSQAGAAFGVFVRTKNKDLKAVAASAT VTALFGITEPAIYGANLRLKKPMIYAVASGAAGGALMGWGGSYGTAFANQGLLTIPVYAE AGTKAFICYLLGCGIAFFGAFLLTIFLGFNDLPLDESRQEPGLKTEAGTVKEKQRIQAPV QGQLVSLDQINDEVFASQQMGKTLAIYPTEEQIVSPGNGQVTALYPTHHAIGLKLDNGAE ILLHIGINTVELKGRGFETFVKVGERVRLGQKLLSFDKQIIQATGYDPTVLVIVTNTAEM AVIETTKQTEITPQTNLFFMQVKEQN >gi|307679224|gb|GL457023.1| GENE 40 39982 - 40800 748 272 aa, chain - ## HITS:1 COG:AGc4081 KEGG:ns NR:ns ## COG: AGc4081 COG1409 # Protein_GI_number: 15889519 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 218 5 223 291 84 27.0 2e-16 MDILHLSDIHFRRNYEKAKDGYKGMLTKMENPLIRLESSLTSLLKIKKIDLVIISGDLTE DGEPEDYAFLKQKLQTILQGIPMIVTLGNHDIKKNFRIGWLNQIGTERPYNVVQTYPEFH IISLDNSEHDNPDGHMNKEQKDWLQTTLKKLSDKPILLVMHHHLLREQSSMPTLPEAEET IQLLKGSDILGVLTGHTHHPYLHHINGIPYYTVAGMSFVGEDEGQGIVRFEENYGYNLYS IDKGRFTHFQVNYYRTDKLLAKLNMQIDSSVL >gi|307679224|gb|GL457023.1| GENE 41 40802 - 41584 676 260 aa, chain - ## HITS:1 COG:BH0442 KEGG:ns NR:ns ## COG: BH0442 COG3639 # Protein_GI_number: 15613005 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, permease component # Organism: Bacillus halodurans # 15 259 23 266 267 179 43.0 6e-45 MIITEISKKKIVSTVVLILLFFITLTRIDYTGLQTFSLKMAIDVFIGLGHPDWSFVYDGS GEDLVSLLILTVAIACLGTSFATVLAIPVTLFSAVNLWPSAPFLTKIGKLGSHILRAFPE LILAIIFVKVLGPGPFAGVMAIGVHQIGMLSKLFTEELESMDEKLIESMDAVGANFWQKL FYVRIPSLLPIYSSLILNHVEIAIRSAATLGLVGAGGIGAPLIFAIQTRNWSKVSILLIG VVLTIFVLDQVTELIRKKLR >gi|307679224|gb|GL457023.1| GENE 42 41581 - 42360 511 259 aa, chain - ## HITS:1 COG:SA0136 KEGG:ns NR:ns ## COG: SA0136 COG3639 # Protein_GI_number: 15925845 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, permease component # Organism: Staphylococcus aureus N315 # 13 258 20 265 266 175 40.0 8e-44 MKIKDTIHFLWYKKLFILFIIFICIESSIAVTGADFNEILTNFSQIGRFLQQFFPPDFSF LPKIITPLIKTLEISFLGTILGFLLAVPFSFLASNVVTKNRIGLLILRFFLSLIRTIPTL LLAALMVAIFGIGEATGVLTITIFTFGMLSQLMFQAIETIDLGPIEATEATGATQLQIAV WSIFPQVASQFFGYAFYAFEVNVRASTVLGYVGAGGIGIILNTSLSLAKYDRVGIIILVI LVMEIVVDWLSAYVRRTLL >gi|307679224|gb|GL457023.1| GENE 43 42357 - 43130 329 257 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 235 1 228 245 131 35 3e-29 MIVFTNVSKTYPNGVQGLQNINLTIKEGEIVAIIGLSGAGKSTFLKSINRLVEITEGEIH INNQSITQAKKKKLRLIRRQIGLISQNFNLVKRSSVQKNVLSGRLGYYSTWKSIFGLFTK DDYQKTTAALNAVGLVDKLHTRSDELSGGQQQRVSIARALVQQAPIILADEPVASLDPIM TKKVMNDLQTINQTLGKTIVINLHSVSLAREYATRIIALKSGEVVFDGIPEQLTDTRLEE IYGMAIFEEVEMAENNV >gi|307679224|gb|GL457023.1| GENE 44 43169 - 44092 1420 307 aa, chain - ## HITS:1 COG:SA0138 KEGG:ns NR:ns ## COG: SA0138 COG3221 # Protein_GI_number: 15925847 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 25 301 37 310 318 176 39.0 5e-44 MRLKKVTSIVLGSLLILGLSGCGMSQAKKKEVTSDKLVVQFVPTNNDGSMEAKTKPFAEY LSKKLDREVEVTLATDYSTISEAMDSGKVDLGIMPPAAYVRAKDMHAAQAILTSQLKDYD QKTGKPLDNVLATTFKGEVLVRNDSNLKELKDLKNKKIATLNPNSASGYIYPVAELKDLG IDPVQEATLTTVNDIPSEITAVLNGQMDAAFVFEGARNVFNAAFPDKDLTKELRVLYLTK GDIPNDAIAVNPKMSTDLKEKIKETFLEMKNDPEGKEAMNLWGHLGYEEAADDAYNTIRA YTEKAAE >gi|307679224|gb|GL457023.1| GENE 45 44289 - 44954 522 221 aa, chain + ## HITS:1 COG:ECs3055 KEGG:ns NR:ns ## COG: ECs3055 COG0664 # Protein_GI_number: 15832309 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Escherichia coli O157:H7 # 32 217 19 205 219 88 29.0 1e-17 MKYLKNRQKLQEYIDLYQLQSYMDTPLAEIGQLVTFEKSEHLIELDQSSNHLYFLLEGNV MIYTPTLEDQKVCISYTHPIALLGEASSLWKKSPKSNVLANTACLCLCIPLNEHRTVLQN DLLFLQTICLTLSERLNSGALLASSLIEPVDVRLAKYILAHQKNSYFNCKLTTCATTLNV SYRHLTRLITQFKKEGIIQKEQQEYLILNPEKLTDIAKMKR >gi|307679224|gb|GL457023.1| GENE 46 45049 - 46509 1394 486 aa, chain - ## HITS:1 COG:L186875 KEGG:ns NR:ns ## COG: L186875 COG1502 # Protein_GI_number: 15673156 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Lactococcus lactis # 11 486 18 487 487 565 56.0 1e-161 MKIFVWILLFLLVINVIAALITVFRKPRSISSVLAWMMTLIFLPGIGFIIYLFCGRGIDG QEVFKLSDDEKQMVQRIKEKVDIDNKKAGRDKRYDLLYDAKVLNRYFRNMDASPLAKRNS LQLFTDGQEKFQALFEDIRAAKETVHVEYYAFFNDTIGNQFLDVLIEKLHEGVEVYLIYD PWGSPGANKKFFARYVDAGGKVAPFITSRDMIRKTRLNYHLHRKIVVIDGKIGWTGGFNV GDQYLNVTEKFGYWRDTHIRLVGTAVFSLQEIFIMDWNASVKYPEERMTYHEKYFKLPED HEVEHLSLQVVSDGPDSEEEILKSGFVRMIFSAEKSVWIQTPYLIPDDSMINALLVAVRS GVDVRIMIPCMPDHPFIYRATQYYANYLHKRGIKIYIYDSGFIHAKTMVIDDELAMVGTT NQDIRSYSLNFEVSTFIYNPDIAWMLAQVFEEDIEKSVLLTDEIIKKQGYWLRFKQNFSR LLSPVL >gi|307679224|gb|GL457023.1| GENE 47 46690 - 47241 724 183 aa, chain + ## HITS:1 COG:SA1727 KEGG:ns NR:ns ## COG: SA1727 COG4843 # Protein_GI_number: 15927485 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 7 177 11 179 200 174 52.0 7e-44 MVVDLKMLAMIFIINFAYITLNTIRFMLTMKGYRVIAPLVSMAEITIYVLGLSMVLNRLD NPLNLLVYALGYAVGISVGIKIEDYLALGYIMVSVILPSTTEQFHLPETLREHGYGVTQS VAYGREGERMVLEILSPRKNERTLYKLINQLEPRAFIISYEPKFISGGFWTKKVRKRNDA ISH >gi|307679224|gb|GL457023.1| GENE 48 47300 - 48184 688 294 aa, chain - ## HITS:1 COG:no KEGG:EF1610 NR:ns ## KEGG: EF1610 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 294 1 294 294 536 99.0 1e-151 MNDLAIYYHSPQQTKQYNHLLNQSLFFPLVTFMYEHREERIILRQLKAAFATEAKLEQFL SEMIDCQLIIRENRQYRLNFPIYTAAEVASLPLAEDELPKFKGTVTEQLFWLAESFWPQV FPEEEDYFFGVSGGLTFYQKQRLASAQLSIITLEKEKTEVPTMPRYFDYLGKEQSLPEAF SALYDLLGDVNPEYYLSQARRVIKQALRGRKVSTVPNIFQESLHLTQVITIDQDHLKLLL PVATEQAEPLEAQSNILAFYYEKIANRSAIERLVFMQQLIEQLGTNSLSYLRIN >gi|307679224|gb|GL457023.1| GENE 49 48256 - 49182 1335 308 aa, chain - ## HITS:1 COG:SP1534 KEGG:ns NR:ns ## COG: SP1534 COG1227 # Protein_GI_number: 15901378 # Func_class: C Energy production and conversion # Function: Inorganic pyrophosphatase/exopolyphosphatase # Organism: Streptococcus pneumoniae TIGR4 # 1 308 1 310 311 377 65.0 1e-104 MSKILVFGHQNPDTDAIGAAISFAYLQKELGKETEAVALGTPSEETQYALDYFNIEAPRV VTEAASETNQVMLVDHNEFQQSISDIAEVNILAVVDHHRIANFETADPLYYRAEPVGCTS TIIYKMFKENNVTIPAQIAGMMVSAIISDTLLFKSPTCTQEDIDAAHALADIAEINLEGY GLDLLKAGTNLSDKSAEVLLDLDAKSFPMNGKTVRVAQVNTVDLAEFLDRQAELEAAMAA ENAANNYDLFVLIITNILDSDSELLAIGAEQAKIEAAFNVTLVNNRAFLPGVVSRKKQVV PQLTEVFN >gi|307679224|gb|GL457023.1| GENE 50 49278 - 50042 860 254 aa, chain - ## HITS:1 COG:SP1976 KEGG:ns NR:ns ## COG: SP1976 COG1180 # Protein_GI_number: 15901799 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyruvate-formate lyase-activating enzyme # Organism: Streptococcus pneumoniae TIGR4 # 5 254 11 261 264 355 64.0 3e-98 MTTPVTGRIHSTENFGTVDGPGVRFIVFTQGCRMRCQFCHNPDTWKIGSGGRVVTTDEVL EEALRFRSYWGEKGGITVSGGEPLLQMDFLIDLFKKAKAQGIHTTLDTCGKPFTREEPFI SQFDELMKYTDLLLFDIKHIDNEQHKLLTTQSNDNILEMATYLSEIDKPVWIRHVLVPQR SDYDEYLIRLDAFIKTLNNVDKVEVLPYHTMGKYKWEELGIPYPLEGIEPPKNDRVENAK KLLHVEDYQGYLAR >gi|307679224|gb|GL457023.1| GENE 51 50119 - 52365 2610 748 aa, chain - ## HITS:1 COG:lin1443 KEGG:ns NR:ns ## COG: lin1443 COG1882 # Protein_GI_number: 16800511 # Func_class: C Energy production and conversion # Function: Pyruvate-formate lyase # Organism: Listeria innocua # 2 748 3 743 743 953 61.0 0 MKQWEGFKGDKWRTSVDTRDFIQNNYTEYKGDDSFLEPIAPSTDKLWAKLQELFEIQHEK NGVYDMDSDIPATITSHEPGYLIKEEEKIVGLQTDVPLKQAFMPFGGIKMANNALVSNGY ETDEEMTKIFTEYRKTHNQGVFDAYTAEMRLARKNKIITGLPDAYGRGRIIGDYRRIALY GIDYLMEQKKKDHDNTGNKEMTDDVIRLREEISEQYRALNDLKQMAASYGFDISRPAANA QEAIQWLYFGYLGAIKSQNGAAMSIGRISAFLDIYIQRDLEAGLITEFEAQEMIDHLIMK LRMVKFARTPEYNQLFSGYPIWATLSIAGMGIDGRSLVTKNDFRILHTLTNMGPSPEPNL TVLYSSHLPEGFRTYAAKIAKESSSIQFENDDLLRENWGSDDCAIACCVSATVMGKDMQF FGARANLAKAVLYAINGGVDEKTKMQVAPKYRPMTGDKLDYHEFMERYKDILDWLAELYV NTLNIIHYMHDKYAYEAPQLALMDTDLQRTFATGIAGISHATDSIMAIKHGEVEVIRDED GMAIDYVPTKEFPTYGNDNEEADAMANWILDYFMTQIKRQHTYRNSKPTTSLLTITSNVV YGKATGNTPDGRRAGKPLAPGANPSYQDGKFLGEKNGLLASLNSTARLEYTIALDGISNT QTINPNGLGKDDDTRINNLRNVLDGYFDKGGYHLNVNVFTNELLLDAQAHPEKYPNLTIR VSGYAVKFRDLTPEQQADVISRTSHDRL >gi|307679224|gb|GL457023.1| GENE 52 52656 - 55118 2805 820 aa, chain - ## HITS:1 COG:SP0855 KEGG:ns NR:ns ## COG: SP0855 COG0188 # Protein_GI_number: 15900740 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Streptococcus pneumoniae TIGR4 # 7 817 4 823 823 966 59.0 0 MEKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDK GFRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMR YTEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATE IPTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVI LRAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQ IVVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVI INRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAE AIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQYGNP RLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSNIRSYTASKPEEIGMKEGDFLL YAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAVYPYK ELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLL DVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVIVTQR GGVKRMLAQELTQLGRAKRGLMVLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSK NYPISERTSNGSFVIDEQKDGQVMEVHEMHSAVIEEEQTN >gi|307679224|gb|GL457023.1| GENE 53 55131 - 57188 2741 685 aa, chain - ## HITS:1 COG:L0290 KEGG:ns NR:ns ## COG: L0290 COG0187 # Protein_GI_number: 15672961 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Lactococcus lactis # 7 643 6 641 644 962 77.0 0 MAKKINNEYNDASIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGN EINVTIQKDNSICVADSGRGMPTGMHASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGV GASVVNALSKWLEVHIVRDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDDTIF STTNFSYEILAERLRESAFLLKGVKITLTDERGEEPKEEVFHYEEGIKEFVAYLNEEKDT LTPVVYFSGAKEGIEVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKAYNEY ARKVGLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVDNVVG EQMGFYLQENSEMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQS RNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIY TIGAGVGPEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPP LYKVSKGTGKKSVIEYAWTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETR TLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIEQHVQFTLEEDGSILDRSEEDTSAPTGE SLLDAEKTKEVEQTDDTEISLFDIE >gi|307679224|gb|GL457023.1| GENE 54 57393 - 57821 580 142 aa, chain - ## HITS:1 COG:L158834 KEGG:ns NR:ns ## COG: L158834 COG1832 # Protein_GI_number: 15672137 # Func_class: R General function prediction only # Function: Predicted CoA-binding protein # Organism: Lactococcus lactis # 3 136 4 138 145 158 57.0 3e-39 MTFENPSQNQIFDILKQEKNIAVVGLSNKPDRTSYKIAEILQQHGYRVLPVNPVLKGETV LGETVYGTLTEIPEKIDIVDVFRRSEFLPEVAAETLKTEAPVFWAQLGLENEEAANLLLN EGRQVIMNRCIKIELAKMADAE >gi|307679224|gb|GL457023.1| GENE 55 57910 - 58353 548 147 aa, chain - ## HITS:1 COG:lin1151 KEGG:ns NR:ns ## COG: lin1151 COG4766 # Protein_GI_number: 16800220 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Listeria innocua # 1 147 1 148 148 207 68.0 7e-54 MTELNREMIETLVRQIVTEKLMPTKQVDPSGIMSIKLPEIDVTEDDRLDTGNPADIVYTK DLFSLEESPRLGCGLMVMKDTTFDWTLEYDEIDYIISGQLDILIDGRKISATAGEIILIP KSSKIQFSVTGDARFVYVTYPADWQSQ >gi|307679224|gb|GL457023.1| GENE 56 58366 - 59466 1748 366 aa, chain - ## HITS:1 COG:lin1150 KEGG:ns NR:ns ## COG: lin1150 COG3192 # Protein_GI_number: 16800219 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Listeria innocua # 1 360 1 360 373 445 79.0 1e-125 MSINEIIMYIMVLFMIIGGIDKCIGNKLGLGEQFEEGIMAMGSLALSMVGIITLAPVLAN LLSPIVVPVYELLGADPAMFATTLLANDMGGFALAQQLANDPQAGLFAGAILGAMMGPTL VFTIPVALGIIQKDDQQFLATGVLSGIITIPFGLLAGGLTAGMPLSLIIPNLIPIIIVAA LIILGLWLAPKGMIKGFQIFGQGVVIVAIFGLVVGAIQLLLGITVIPGIAPVTEGIEVVG GIALTLAGAFCLVAVITKVFNKPLMKLGKVLGMNEVAAAGMVATLANNIPMFQMLKDMDN RGKIINIAFAVSASFVLGDHLGFTAGVAKEMIFPMIVGKLVGGITAIFVAIFMANRMLGK PETEVK >gi|307679224|gb|GL457023.1| GENE 57 59479 - 59742 436 87 aa, chain - ## HITS:1 COG:lin1148 KEGG:ns NR:ns ## COG: lin1148 COG4576 # Protein_GI_number: 16800217 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; C Energy production and conversion # Function: Carbon dioxide concentrating mechanism/carboxysome shell protein # Organism: Listeria innocua # 1 85 1 86 89 94 59.0 4e-20 MLLGKVTGSLWSTRKDEKLNGWKFMMVDILNQEDEKQGFLIAADNAGAGVGDKVLISQGN AARISAEDPNVPIDAMIVGVIDSTEDE >gi|307679224|gb|GL457023.1| GENE 58 59755 - 60354 482 199 aa, chain - ## HITS:1 COG:no KEGG:EF1620 NR:ns ## KEGG: EF1620 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 199 1 199 199 359 98.0 4e-98 MNVSEMENLIQQITDRICQQLLSSSYSVALAEAKEAFPEEMFVRFPDVNWVTKEQKLARG LVVKRLTISQVNAIAHLQETDELVKNILAFLFEGKPVLVLTPIPSVTKNSRLKYRLKQTI QENVDMCQQFGLIFYHDSENYAVFQAACQKQLRSLAETKRTYITEKQLIRMTEAGVSLSK NAYLTPLAKDYARKHQLLT >gi|307679224|gb|GL457023.1| GENE 59 60369 - 60995 735 208 aa, chain - ## HITS:1 COG:lin1146 KEGG:ns NR:ns ## COG: lin1146 COG4869 # Protein_GI_number: 16800215 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Propanediol utilization protein # Organism: Listeria innocua # 4 208 6 208 213 270 65.0 2e-72 MDSMNEIVEEVVKRIQQQQQNTFEVEASGRHVHLSRQEIDALFGPGYQLTKVKDLSQPGQ FVCKERITVAGPKGLFQNVVILGPERSESQVEVSMTDTRILGINAPVRESGKTEGTPGVT LMNGSAVVTLSHGLIVAKRHIHMTPEDALKNKVSNSQIVQVKVEGTRPLIFDDVVVRISP RFATYMHIDYDEANACGLTKGARGYILK >gi|307679224|gb|GL457023.1| GENE 60 61008 - 61577 324 189 aa, chain - ## HITS:1 COG:no KEGG:EF1622 NR:ns ## KEGG: EF1622 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 8 189 1 180 180 301 98.0 9e-81 MTVITEDMLRIKRLKKELEDGTDFVFPVGSFLTPAAKSYLREHRINSSFSSTNPLLSEVH SVKASSQKQKQEHLSKETIYEIRHLSHLLYLPFLTNEALSTEGWLYFEQQQQWLEKFILE QSLVMEPVILESKVTILTNQQRQWRYSSKEIQLQLDKIILQLKGESQLFGLFQAWATELI STMAEISRN >gi|307679224|gb|GL457023.1| GENE 61 61645 - 61935 530 96 aa, chain - ## HITS:1 COG:lin1144 KEGG:ns NR:ns ## COG: lin1144 COG4577 # Protein_GI_number: 16800213 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; C Energy production and conversion # Function: Carbon dioxide concentrating mechanism/carboxysome shell protein # Organism: Listeria innocua # 1 92 1 92 94 113 91.0 8e-26 MSSTNALGMIETRGLVGAVEAADAMVKAANVTLIGKEQVGGGLVTVMVRGDVGAVKAATD AGAAAAERVGELLSVHVIPRPHTEVDAILPHATTEL >gi|307679224|gb|GL457023.1| GENE 62 62059 - 63537 1649 492 aa, chain - ## HITS:1 COG:lin1143 KEGG:ns NR:ns ## COG: lin1143 COG1012 # Protein_GI_number: 16800212 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Listeria innocua # 1 491 1 485 486 639 68.0 0 MELVDKDLRSIQETRNLIRKAKEAQQVLATFSQKQIDAIVQAVSEATFNQREKLAKMANE ETGFGIYEDKIIKNAFASKVVYDEMKDKATVGVIHDDAAKKVTEIAVPVGVIAGLIPSTN PTSTVIYKALISLKAANSIVFSPHPNALKSIIETVEIIQKAAIAAGAPEGCVSVIKTPTM QATSELMKNKETNLILATGGNAMVKAAYSSGTPAIGVGPGNGPAYIERSANVPHAVKQIM DSKTFDNGTICASEQSIIVETVNREAVKEELIKQGAYFLSPAEADKLAKFILRPNGTMNP QIVGRSVQHIASLVGLSIPKDRRLIVAEETHVGLKYPFSREKLAPIIAFYTVENWEAACA LSIEILKGEGAGHTMGIHTENKEVIREFGLRKPVSRLLVNTSGTLGGIGASTNLVPALTL GCGAVGGSSTSDNIGVENLFNLRRVAYGVRDLEEIRQEFGQTSTTSVATSCETTNQEELV NAVVAQVLARLN >gi|307679224|gb|GL457023.1| GENE 63 63528 - 64046 752 172 aa, chain - ## HITS:1 COG:lin1142 KEGG:ns NR:ns ## COG: lin1142 COG4577 # Protein_GI_number: 16800211 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; C Energy production and conversion # Function: Carbon dioxide concentrating mechanism/carboxysome shell protein # Organism: Listeria innocua # 2 169 4 165 165 116 45.0 2e-26 MKALGMVEVKGFLGAISVADAALKAADVTLLKAEIINGGLTTVELIGDVAAVQAAVEVGT EVAKELNCLIAHHVISRVDAQTEVILSDPEPKSAPEPMEQVEVIEEEIETPDLEEHTGTR QKLETQRVVDLRKQAYKMNLSSLKKSEIKFANKEALIQAIMAEIERSEDEWN >gi|307679224|gb|GL457023.1| GENE 64 64060 - 64713 982 217 aa, chain - ## HITS:1 COG:lin1141 KEGG:ns NR:ns ## COG: lin1141 COG4816 # Protein_GI_number: 16800210 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Listeria innocua # 1 217 1 217 217 290 76.0 2e-78 MKNDRLGANVLSMKVIPNVDPALAKELSLKPEHRSLGIVTSDCDDVTYVALDEATKAADV TVVYGKSMYAGAANASTKLAGEVIGIIAGPSPAEVNSGLSVITQVIEEEASFYSANEDDS IVYFAHVVSRTGSFLSEQANIPEGEAIAYLIAPPLEAMVGLDAAMKAADVQMGVFYGPPS ETNFGGALLTGSQSACKAACSAFEQVIQNIADNPLSY >gi|307679224|gb|GL457023.1| GENE 65 64727 - 65638 1303 303 aa, chain - ## HITS:1 COG:lin1140 KEGG:ns NR:ns ## COG: lin1140 COG4302 # Protein_GI_number: 16800209 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine ammonia-lyase, small subunit # Organism: Listeria innocua # 1 300 1 293 293 405 72.0 1e-113 MNEKELKEMIAGILTEMVADNQAVSTATVTAEEKPVTTHVTETTEIEEGLIPDITEVDLR KQLLLKNAVDPEALLKMKAFSPARLGVGRAGTRYMTSSTLRFRADHAAAQDAVFSDVSED LVKEMNFISTKTICNSKDEYLTRPDYGRQFDEENSEIIRKNTTPKAKIQMVVGDGLSSAA IEANIKEVLPAIKQGLNMYNLDFDNVVFVKYCRVPAMDKIGEITDADVVCLLVGERPGLV TAESMSAYIAYKPTVGMPEARRTVISNIHKGGTPAVEAGAYIAEIIKKMLDKKKSGIDLK EAE >gi|307679224|gb|GL457023.1| GENE 66 65656 - 67020 1673 454 aa, chain - ## HITS:1 COG:lin1139 KEGG:ns NR:ns ## COG: lin1139 COG4303 # Protein_GI_number: 16800208 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine ammonia-lyase, large subunit # Organism: Listeria innocua # 1 454 1 454 454 753 79.0 0 MILKTKLFGKVYQFTSVKEVLAKANEEKSGDKLAGVAANSAEERVAAKVVLSELSLNDLF NNPVVDYDEDEVTRIIIDQVNMRIFESIKHWTVAELREFILSSETTDFDIKRISRGLTSE MIAAVCKLMSNMDLIVGAKKINIEKTANTTIGRPGTFSNRLQPNHPTDNVDGIMASVMEG LSYGAGDALIGLNPVDDSTESVKRILNKFEEFRSEWEIPTQTCVLAHVTTQMEAMRQGAP TGLVFQSIAGSEKGNTAFGLNAEILAEAQDLALHSGQAAGPNVMYFETGQGSELSSEANF GADQVTMEARCYGLAKKFDPYIVNTVVGFIGPEYLYDSKQVIRAGLEDHFMGKLTGISMG CDVCYTNHMKADQNDMENLAMLLATAGCTYIMGIPHGDDVMLNYQTTGFHETATIRETLG LRPIKEFEEWMEKMGLMENGKLTSRAGDASVFIK >gi|307679224|gb|GL457023.1| GENE 67 67038 - 68462 1548 474 aa, chain - ## HITS:1 COG:lin1138 KEGG:ns NR:ns ## COG: lin1138 COG4819 # Protein_GI_number: 16800207 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition # Organism: Listeria innocua # 4 474 3 473 473 561 60.0 1e-159 MSKETLLTVGIDLGTSTTQLVLSELTVENFASAFTVPRISISDKKVIYRSDIIFTPLLNQ SEIDAEPIKAFVAEQYRQAGIHKQDIQMGAVIITGETARKSNANNVLRALSGYAGDFVVA TAGPDLESIIAGKGAGAQTYSETKRKPVVNLDIGGGTTNLAVFKDGEVIDTACFDIGGRL IKLDQQQKITYIAPKIQEIINKKGLTLHLGDQATEQNLLPIISELVAVLENSIGLGTQSP FYQLLVTNHPLRKAEELPIVTFSGGVADCLNTTSTNLFKYGDIGLLLGKYLRKSLIISEK EVLESAETIRATVVGAGSHTAEISGSTIAYREQILPVKNIPILKLAQEDETLTVTELGQR IQEKLNWHRIEETPQIALAIRGMSNPTFADIQRYGQGIVEGLASLVAEQIPIIVMVDEDM AKALGHALSAHLPKDYPFICLDSVKVENGDYVDIGLPVAEGAVLPVIVKTLVFN >gi|307679224|gb|GL457023.1| GENE 68 68553 - 69986 1233 477 aa, chain - ## HITS:1 COG:lin1137 KEGG:ns NR:ns ## COG: lin1137 COG3920 # Protein_GI_number: 16800206 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 2 472 3 479 485 409 48.0 1e-114 MKRLEQLCHQYTNLSESDIKELQRTARYLSSTTLYQSADVFIDVYKEMSQQALVVYHKPP AKTTSLYSGDVVGMEALLKNEPGVLRTMQTSLNSIGLLAVTQENRLIKQNIYPIRNEHRT IGVIIVEIAADEEIQADLQKEELNNCQLAKVAKSTSQVDALFIDQLAEAVLIFDAAGHLL ITNHNAQELYRKLGYRDNIIGMSYDNLSIDYTTFEYVLYQMKYKMSNQPIESKTTYLNYY FKVRKVWLASEEQLIMIIQDNTEFKEKEAEIISKSVAIREIHHRVKNNLQSVVSLLRIQE RRTQSPEAKKVLHESVNRIMAIAATHELLSKQVKDDVALRQTLEAVMYNFRHLFQGAQPI EMMMDVDPAIMVSSEQMVTISLVVNELLQNIFDHAFEPQTSGVVKLSGTLDNKMITITVT DNGKGYDVHQSNETSLGLMIVKSYVKDKLKGKITIESNKQGTKTCFYFEQNTSDVVH >gi|307679224|gb|GL457023.1| GENE 69 69987 - 70559 726 190 aa, chain - ## HITS:1 COG:lin1136 KEGG:ns NR:ns ## COG: lin1136 COG3707 # Protein_GI_number: 16800205 # Func_class: T Signal transduction mechanisms # Function: Response regulator with putative antiterminator output domain # Organism: Listeria innocua # 1 190 4 193 193 241 69.0 8e-64 MDGRIVIVDDEPITRLDIRDIVIEAGYEVVGEAADGFEAIEVCKKTQPDLVLMDIQMPIL DGLKAGKKIVQDQLASSIVFLSAYSDVQNTDKAKKLGALGYLVKPLDEKSLIPTIEMSIE RGKQTQLLLNQIDKLSLKLEERKIIEKAKGILVKENHISEEEAYQMLRTLSMNKRARMSE IAELIVMDDE >gi|307679224|gb|GL457023.1| GENE 70 70587 - 70934 435 115 aa, chain - ## HITS:1 COG:lin1108 KEGG:ns NR:ns ## COG: lin1108 COG4810 # Protein_GI_number: 16800177 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Listeria innocua # 2 115 5 116 116 151 73.0 2e-37 MEEKQRMIQEYVPGKQVTLAHIIASPNKEIYTKLGLPEGTSNALGILTITPSEAAIIAVD IATKSGDIQIGFIDRFSGSVVISGDVSSVEAALQAVIEGLQQILNFSVTCKITRT >gi|307679224|gb|GL457023.1| GENE 71 71094 - 72224 1067 376 aa, chain - ## HITS:1 COG:lin1135 KEGG:ns NR:ns ## COG: lin1135 COG1454 # Protein_GI_number: 16800204 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Listeria innocua # 1 376 1 378 379 407 55.0 1e-113 MKTIHFPTELWVGEGALANLETLHDKRVFIVTDPFMVDSGFVNEVTKHLTKSEWQIFSDI IPDPPIDKIAAGIKQLATFQGDTILALGGGSAIDAAKAMKFFGKRTLQTQIAEFIAVPTT SGTGSEVTNFSVITVAETGTKIPLVTDEIQPEIAILDTNLVMSVPPKITADTGMDVLTHV IEAYVSTEANPISDALCEKVVRLVFDNLEIAFNQGSNQQARENMHLASCMAGMAFNVTSL GLNHGIAHAAGARLHVPHGRMNAMLLPEVIAYNSGLANGKVTNEPTAKRYAQLANCLNDT QTTNARIGVQQFIRQIKQLRQKLNMPATFSDYGLPKEEVQAAIPKIAEGALMDGCTKTNP VQPTAAEVTKILNSIL >gi|307679224|gb|GL457023.1| GENE 72 72711 - 73292 828 193 aa, chain - ## HITS:1 COG:lin1172 KEGG:ns NR:ns ## COG: lin1172 COG2096 # Protein_GI_number: 16800241 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 190 1 188 188 207 56.0 1e-53 MKIYTKTGDKGMTKLVGNSTVAKDSDRVESYGTIDELNSWVGYIISQLPQENQEIKEELE ALQHLLFDAGTDLSTPIEAQRPFKLQKESVHWLEQRIDFYTAQSPDIDRFILPGGTPAAS MVHVARTIARRAERIIVRLNWTAKINEEVLIFTNRLSDYFYALARYLNVQAQRPDVFYER SEKVFHKIKEDGL >gi|307679224|gb|GL457023.1| GENE 73 73289 - 73744 576 151 aa, chain - ## HITS:1 COG:lin1109 KEGG:ns NR:ns ## COG: lin1109 COG4917 # Protein_GI_number: 16800178 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Listeria innocua # 5 147 1 143 143 163 56.0 1e-40 MEVAMKRIILMGAIGCGKTTLCQALQGKELIYDKTQAVEFHTEMIDTPGEFILHRQYYNA LNVTAAEADVIGLVQSAVETQQVFSPGFGSIFPKEIIGILTKIDLAQDSQQLEIVRQQLK SAGATRIFEISSVEKIGLQELVDYLEEDEAE >gi|307679224|gb|GL457023.1| GENE 74 73874 - 74641 220 255 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 226 1 226 245 89 29 1e-16 MIELKETAVTLQQTPILKDISLVFPTGSKTCILGPNGCGKTTLLKTIAGLVPYSGSVLID GQEVHGQKRKELATKVAMMSQFTTVAFDYTVYETVLMGAYQQQAQRFLPIVSKQEKERVL YYLERTGLLPLKDKVVNQLSGGQQQRVFLAKLFVQDPEIILLDEPNNHLDIRYQQELIQQ LNEWSAQEGKTLIGVFHDIRLALTLSEKIVFMKQGKVAAQGDFQTLASKEFLQTIFETDI VSYFQKQHKVWETIQ >gi|307679224|gb|GL457023.1| GENE 75 74638 - 75645 1119 335 aa, chain - ## HITS:1 COG:BS_yvrB KEGG:ns NR:ns ## COG: BS_yvrB COG0609 # Protein_GI_number: 16080370 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Bacillus subtilis # 18 330 29 346 353 202 41.0 1e-51 MSKKTCLILMLLISMSMLFLGIKIGSVQISLTDLLQILVKKTVSEDGILEGIIWNVRLPR VVMAYLVGAGLAVSGTVMQSLLGNPLASSYTLGVSAGASLGAALIMVTGVTASILGAFLL PLTGFIFGLATVFLVLLFTQTMDSQMSNQTVVLVGMIMTLFVGAILTLITALFQDYLKQL VFWQMGSFSGSNWQKIAIYCPILLVSSLFLWFDANALDVLGLGEEHAMLAGVEVKTAKLR IILLASLLAGSAVSFVGVIGFVDLIAPHIVRRYLGATHRWLIPGSAILGGTIMVLGDTIA RTILSPREIPIGAVTALIGAPFFLYIYFKKRGVAA >gi|307679224|gb|GL457023.1| GENE 76 75638 - 76597 1236 319 aa, chain - ## HITS:1 COG:BS_yvrC KEGG:ns NR:ns ## COG: BS_yvrC COG0614 # Protein_GI_number: 16080371 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Bacillus subtilis # 21 315 20 314 314 154 32.0 2e-37 MKKFTLTMMTLGLVATLGLAGCGKQEKKATTSSEKTEVTLPTKDRSGKEITLPKEATKII SLVPSTTEVIEDLGKTDQLIAVDTQSSTMMTDLKKLPQMDMMAVDAEKLIALKPQIVYVN DINLASSESVWKQVEDAGITVVNIPTSTSIKAIKEDVQFIADSLSEHEKGQKLIKTMDQE IDEVAKIGKTIKKPKTVLFEVAALPDIYSFGNGTFLNEMIETIGAKNVLANEKGWLPVTE EAAIAAKPEVILTNVNYMKDPAKEILARKNWESVPAVQNKEVFEIDNMSSSLPNNHITKA LKQMAKAVYPEEYKDLKDE >gi|307679224|gb|GL457023.1| GENE 77 77150 - 77779 764 209 aa, chain + ## HITS:1 COG:SP0851 KEGG:ns NR:ns ## COG: SP0851 COG0344 # Protein_GI_number: 15900736 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 1 205 1 204 213 194 53.0 8e-50 MKIVILLLVAYLLGSIPSGVWIGKLFFKKDIRQFGSGNTGTTNTFRVLGKPAGITVLLMD ILKGTLATSLPYLFGLQGVNPLFFGVAAVLGHTFPIFANFKGGKAVATSAGMLLAYSPTF FIYSALIFVICLYLTSMVSLTSMISAVLITLSTIILPFTVPAILPTFNWLLTVIAIALTT FIFVRHRENIQRIKNGTESRLSFGLRAKK >gi|307679224|gb|GL457023.1| GENE 78 77821 - 78696 1125 291 aa, chain - ## HITS:1 COG:lin1322 KEGG:ns NR:ns ## COG: lin1322 COG2017 # Protein_GI_number: 16800390 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Listeria innocua # 3 290 2 289 290 257 43.0 2e-68 MTVQIENEFLIATFAEEGAELVSLQSKETGIEYIWQGNPEFWARHAPVLFPIIGRLKEDT YIYQNQAYHLTQHGFARDQVFDVIEKGGEEVSFSLKSTKETKKKYPFDFELVITYTLEHQ ELTVNYQVENTGKEEMYFGIGGHPAFNVPLESSLTFEDYYLSFSPKKSRTQIPLAGPFID LANKTLAQTNTSFDLTHQLFENDAMIFETKGQTAITIATDESDHQVTLSYPEMPFVGIWS PTPKEAPFVCIEPWCGIADAVDATGQLAEKFGINKLPANELFKTQYMISVK >gi|307679224|gb|GL457023.1| GENE 79 78730 - 79512 951 260 aa, chain - ## HITS:1 COG:SPy1777 KEGG:ns NR:ns ## COG: SPy1777 COG4465 # Protein_GI_number: 15675618 # Func_class: K Transcription # Function: Pleiotropic transcriptional repressor # Organism: Streptococcus pyogenes M1 GAS # 1 260 1 259 260 273 56.0 2e-73 MATLLEKTRQVNELLQKNNLFDVQAELPYNKMAMILGDILESNAYIISSSGDLLGYTEKL DVNNARIKNMFKEKKFPQGYTEAVDMLKVTEANIPIDSDLTAFPFESRELYPFGLTTIVP LYGAGKRLGTIILARVEKSFNEDDLVLAEYSATVVGMQILYHQSRTIEAEVRSATAVQMA INTLSYSELKAVHAIFEALDGEEGRLTASSIADEIGITRSVIVNALRKLESAGIIESRSL GMKGTYLKVLNQQFIKELEK >gi|307679224|gb|GL457023.1| GENE 80 79533 - 80936 1349 467 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 7 467 9 466 466 524 59 1e-147 MNELNKTPKEIVKELDQYIVGQQAAKKSVAVALRNRYRRLQLEENMQQDITPKNLLMIGP TGVGKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKQQYSR VYAQALKKANQRLVKVLVPGIKKEQKQAGGNQFEQMMNMFNMAQQQQEAQEEVTEDIRTN RRTILEQLEKGLLDNREVTIEIEEPKKTMPAMNNGLEQMGIDLNETLGALSPKKKIERSV TVKEAQELLVKEESAKIVNDADIHSEAIRLAESSGIIFIDEIDKITSKSQQNSGEVSREG VQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDDLT ADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIERLAHIAYDVNRDTDNIGARRLH TILERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIVQNEDLSRYIL >gi|307679224|gb|GL457023.1| GENE 81 80951 - 81499 886 182 aa, chain - ## HITS:1 COG:lin1317 KEGG:ns NR:ns ## COG: lin1317 COG5405 # Protein_GI_number: 16800385 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent protease HslVU (ClpYQ), peptidase subunit # Organism: Listeria innocua # 5 182 2 179 179 244 71.0 9e-65 MVESQFHSTTICAVEKDGKFAMAGDGQVTMGESVVMKGTAKKVRRIYNDEVVVGFAGSVA DAFTLEEKFEGKLNEYNGNLTRAAVELAQEWRTQQSMQKLEAMLIVMNKEEMLLVSGTGE VITPDDGILAIGSGGNFALSAARAMKNFGDKEMPAKEIAKNALNIAADICVFTNHNIIVE EL >gi|307679224|gb|GL457023.1| GENE 82 81528 - 82427 1016 299 aa, chain - ## HITS:1 COG:lin1316 KEGG:ns NR:ns ## COG: lin1316 COG4974 # Protein_GI_number: 16800384 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Listeria innocua # 2 299 3 300 300 312 54.0 5e-85 MEEKNWPELFARYLIVERGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLS ELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDA LFESAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVP FGSFAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNA EIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHPRA >gi|307679224|gb|GL457023.1| GENE 83 82639 - 83946 1600 435 aa, chain - ## HITS:1 COG:lin1315 KEGG:ns NR:ns ## COG: lin1315 COG1206 # Protein_GI_number: 16800383 # Func_class: J Translation, ribosomal structure and biogenesis # Function: NAD(FAD)-utilizing enzyme possibly involved in translation # Organism: Listeria innocua # 1 434 1 434 434 651 73.0 0 MKKKVTIIGAGLAGSEAAWQVANAGVPVDLYEMRPVKKTPAHQTENFAELVCSNSLRGNS LTNAVGVLKEEMRRLNSIIIGSADQTAVPAGGALAVDRDSFSETITEKIKSHPLITIKNE EITDIPEGIVIIATGPLTSESLSQKIQEFNGSEGFYFYDAAAPIIDKSTIDMDKVYLKSR YNKGEAAYLNCPMTEEEFNAFHEALVNAEVVPLRTFEKEKFFEGCMPIEVMAQRGIKTML FGPMKPVGLEDPKTGKRPYAVIQLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLEN AEFVRYGVMHRNSFMNSPELLKPTYQSKKRDDLFFAGQMTGVEGYVESAASGLLAGINAA RLAKGEEPIEFPRETTLGSMAYYITHAEGKHFQPMNANFGLFPELPERIRDKKERYEAIA NRALDVQAQVIQSLD >gi|307679224|gb|GL457023.1| GENE 84 84054 - 86132 2149 692 aa, chain - ## HITS:1 COG:L0298_1 KEGG:ns NR:ns ## COG: L0298_1 COG0550 # Protein_GI_number: 15673212 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Lactococcus lactis # 4 574 26 589 589 810 71.0 0 MAYKYLVIVESPAKAKTIEKYLGRNYKVVASVGHIRDLPKSKMGIDIENNYEPHYISIRG KGDVIKSLKAAAKKAEKVYLAADPDREGEAIAWHLAYLLGLDLKDKNRVVFNEITKEAVK AAFKEPRTINVDLVDAQQARRILDRLVGYSISPILWRKVKKGLSAGRVQSVALKMIIDRE NEIREFKPEEYWSIDGNFQKGRKKFKANFWGVDGKKKKLPNAEAVKEITSRIDGKDYDVT KVEKKERKRNPALPFTTSSLQQEAARKLNFRTRKTMMVAQQLYEGIALGKQGTVGLITYM RTDSTRIADSAKAEAAEFIEKTYGDEFSAHGGRKAKNTQGAQDAHEAVRPSSVLRTPDEM KKYLDKDQLKLYTLIWSRFVASQMTPAILDTMKVTLQQNGVTFIANGSKVKFKGFMQVYV EGRDDGKEDKENILPELVEGDVVKSVDIEPKQHFTQPPARFSEATLIRTLEENGVGRPST YAPTLETIQRRYYVKLTNKRFEPTELGEIVNSLVSEFFPQIVDTHFTATMETDLDKVGEG QEKWVEVVDRFYKPFEKELTNAEEKIEKIQIKDEPAGFDCELCGHPMVIKLGRYGKFYAC SNFPDCRNTKAIVKEIGVTCPVCHEGQVIERKSKKNRIFYGCSRYPECDFTSWDKPVGRP CPKCGQYLVEKKVKGGKQVVCINGDYEENVQK >gi|307679224|gb|GL457023.1| GENE 85 86317 - 86970 576 217 aa, chain - ## HITS:1 COG:SP0288 KEGG:ns NR:ns ## COG: SP0288 COG1266 # Protein_GI_number: 15900222 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Streptococcus pneumoniae TIGR4 # 19 217 19 216 230 80 30.0 2e-15 METVVRKRWLFGMQLLGFLILDQIPLMMVSVVQFSTENFWFRFVSGLVAVGLGAYFVYLF VAFLKKKKLITWTFLGIKETLPVVLLGLVIIFCVGILGDFLLRLEGLETTSNQQSVEEIV QAIPKGLILIFAGVIGPIFEEGIFRVGIQAFFKPASKIGILVSSILFALVHTPTDIGSFV IYWGMGLALSWVYLRTGRFEAAVLTHFVWNVIGILML >gi|307679224|gb|GL457023.1| GENE 86 87061 - 87924 814 287 aa, chain - ## HITS:1 COG:SP1266 KEGG:ns NR:ns ## COG: SP1266 COG0758 # Protein_GI_number: 15901126 # Func_class: L Replication, recombination and repair; U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake # Organism: Streptococcus pneumoniae TIGR4 # 81 287 79 284 286 219 52.0 5e-57 MEILQRQLLFKLAVCQGIGNLGILKVLQEAIAQKRVDFSSTEIIRIAEIKKYRELFEQSW SHHTIHSEALYIRQCQHQFMTILDAVYPKLLREIYNPPAILFYRGNLQLLSRRKIGIVGA RYATSYGLRVTEALVPKIVKEGFTIVSGLAKGIDSRSHEMAIQNGGQTIGILGTGLDVYY PYEKKELQQTMKQNQLVLTEYVNGSGPKKYHFPARNRIIAGLSLGVCVMEARKNSGSLIT AQAAMDYGREVFAVPGSIFQSFSTGCHELIQDGAKCVQTIDDICEEL >gi|307679224|gb|GL457023.1| GENE 87 87985 - 88752 1201 255 aa, chain - ## HITS:1 COG:SPy1162 KEGG:ns NR:ns ## COG: SPy1162 COG0164 # Protein_GI_number: 15675138 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HII # Organism: Streptococcus pyogenes M1 GAS # 5 254 4 256 263 269 56.0 5e-72 MVKESIQAIKEALLTVTDATDERLASWREDERSGVQQAIKQWERRQLAKEQEWQLFKKMS QFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLY NQIQEQAVAIGLGIADQGVIDQINIYQATKQAMKMAIDDLAFAPDYLLIDAMQLDVPQPQ ESLIKGDARSISIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKYGV TPIHRRTFAPIKDMI >gi|307679224|gb|GL457023.1| GENE 88 88754 - 89605 972 283 aa, chain - ## HITS:1 COG:L128951 KEGG:ns NR:ns ## COG: L128951 COG1161 # Protein_GI_number: 15673276 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Lactococcus lactis # 1 275 1 275 282 323 54.0 2e-88 MTIQWFPGHMAKARREVSEKIKYVDIVFELVDARLPLSSRNPMMDQIVQQKPRLVLLNKG DLADNDQNKKWQHYFQKKGYQTLVINAQQNKGINKIVPAAKEALKEKLAREQAKGLKPRA IRAMCIGIPNVGKSTLMNRLVGKKIAQTGNKPGVTKGQQWLRSGSQLELLDTPGILWPKF EDEEIGKKLALTGAIKDQLLHLDDLAIYGLEFFARFYPQRLTERYGLTEEELFLPAPEQL MLISQKRGFRDDYNRASEMIILEIRSGKLGTYTLDRWEELGDE >gi|307679224|gb|GL457023.1| GENE 89 89882 - 90823 882 313 aa, chain - ## HITS:1 COG:L157055 KEGG:ns NR:ns ## COG: L157055 COG1893 # Protein_GI_number: 15673305 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate reductase # Organism: Lactococcus lactis # 1 313 1 312 312 409 62.0 1e-114 MKIIIAGAGAMGSRFGLMLHQAGNDVIFVDGWPEHIEAIRKNGLVADFNGEVVTAKIPIY PQTEVASIDFTADLVILFTKAMQLEGMLEALEHFLNKNTKVLCLLNGIGHEDIIKKYVPY ENILLGNTMWTAGLEGPGKVKLFGNGSIDLQNLGAQSEQAAEAVIKVLNNAGLNARYSEN ILSSIYKKACVNGTMNGLCTLLDCNMADFGETEQADQIVQQIVNEFLAVAEVEQVTLDKQ AVLQQIRSCYNRETIGLHHPSMYQDLITNHRLTEIDYINGAIVRKGKAYGIATPYCQFLT ELIHCKENLLHAK >gi|307679224|gb|GL457023.1| GENE 90 91000 - 91890 758 296 aa, chain + ## HITS:1 COG:SA2330 KEGG:ns NR:ns ## COG: SA2330 COG0583 # Protein_GI_number: 15928121 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Staphylococcus aureus N315 # 1 295 4 292 295 115 25.0 1e-25 MNIQLLKYFIEIVNTRSLSAAARNLFVTQPTLSLALKKMESELGTALFDHSDQPFQLTDT GVYLYEHGQEVVFQFDQLVTDIREMNQKPVKKQLRLGLTTLFAVQFMKEISRFLTTHPHV NLILQQDGSPKLQTMLANKEIDMGLISFPNTLPEIIHIEPLETTTKGYHVYVVVPESNPL SQYEKLTFKDLKDQRFSSLSDNFMIGRLLLDRTRSFGYEPNIILHNDDLQVLLYSLQKNN SICLLPIEYYEVGKSQGLKWIPLKDKFDYFPIGIALRRDFSMTEDVRDFIRIIKEN >gi|307679224|gb|GL457023.1| GENE 91 91899 - 92951 1214 350 aa, chain - ## HITS:1 COG:SPy0851 KEGG:ns NR:ns ## COG: SPy0851 COG3641 # Protein_GI_number: 15674884 # Func_class: R General function prediction only # Function: Predicted membrane protein, putative toxin regulator # Organism: Streptococcus pyogenes M1 GAS # 15 350 12 352 352 250 49.0 3e-66 MPTDKLDAQLTPRIFFNKVLAGTASGTIIALIPNAVLGAILKYFAEYKIIEMIIHAAQIF QLATPLIIGGLIAFQFGLTPQKMMIAGGAAFAGSGVIKFNSEVKGFIGAGTGDIINIMIT ASVAVLLLLVIDKKFGSVEIIALPIVIGVGAGLFGMLIYPYVTQITVAIGKVINNFTDFQ PIIMSILIACSFAALIISPITTVAIGLAIQLNGLSAGAAAMGIAATTVVLVINSWNVNQS GVTLAVSLGGMKMMMPNLFKYPIILIPCLFTATISAIPVVLFNISGTPQSAGFGLVGLVG PLASLDAGLGILPLLFSWFVVPIVAGLFSKFLFEKVLKLYDSKVVFAYQG >gi|307679224|gb|GL457023.1| GENE 92 93094 - 94392 1615 432 aa, chain - ## HITS:1 COG:BS_bfmBB KEGG:ns NR:ns ## COG: BS_bfmBB COG0508 # Protein_GI_number: 16079459 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Bacillus subtilis # 1 432 1 424 424 371 48.0 1e-102 MATKEIKMPHLGESVTEAAIVQWLVKPGDSVKRYDPLMEVVSDKVTTEVPSDFDGVVKEF LISLDTDVPIGTAVMTLETEETTEKTEEATLAPVKEASAEQAQEHETVETTSTATSHQKN NGRYSPAVLKIAQEKKIDLTQVTGTGRDGRITRKDVTNFTPTQARTPEKTVSPGTSPSIS EEPVASQNESAATASPTETTTDKIVSADPVRKAIAKKMVQSVNEIPHAWLMVEADVTNLV QLRNSLKDEFKQQEGLSLSFFPFFAKAVIQALKKNPKINTSWDDGSIIYHKDVNLSIAVT TDEHLYVPVIQQADNYSIAGLAKEINRLAQEVRQGTLASKEMQGGTFTLNNTGTLGSVQS MGIINHPQAAILQVESINKRLVPTADGGFKVADMVNLCLSIDHRILDGQQAGKFLRDVKD NLAKYNADTDVY >gi|307679224|gb|GL457023.1| GENE 93 94416 - 95402 1432 328 aa, chain - ## HITS:1 COG:lin1410 KEGG:ns NR:ns ## COG: lin1410 COG0022 # Protein_GI_number: 16800478 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit # Organism: Listeria innocua # 1 328 1 327 327 424 61.0 1e-119 MAEMTYLEAINLGISEEMARDEKVVIFGEDVGGDKGGVFGVTKGLAAKYGDERCFNTPLT EGLIGGLAVGLGLMGYRAIGEFQFADYILPATNQLLSEARTMRYRTKGDWTAPIVYRTPY GGGVRGGLYHSQSTEKVFCGQPGLRVVTPSNPYDAKGMIKAAIRSDDPVIFYEHKRLYRL LKDEVPADDYIVPIDKANVVRTGSDLTVISYGMTLQLALAAAEKLAAEGIDAEIVDVRSL YPLDRETLVAAAKKTGKVLLVTEDNKEGSVMSEIAAMISEDALFDLDAPIQRLAGPDCPS MPYALPLEREFLINEEQVLAAMKELAEF >gi|307679224|gb|GL457023.1| GENE 94 95424 - 96410 1211 328 aa, chain - ## HITS:1 COG:lin1409 KEGG:ns NR:ns ## COG: lin1409 COG1071 # Protein_GI_number: 16800477 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit # Organism: Listeria innocua # 3 326 2 325 331 325 53.0 1e-88 MKTLKKSGLSKEELIQAYRQVLRGRRLDERLWQLTRIGKTSFNISGQGAEVAQVAMAMAF DPQKDYFLPYYRDMTACLVWGMTSKDILMGSFGKEADPSSHGRQMPNHYGSKEHNIVSFS STVSTQMPLATGVGYAAQLQKADFVALTTTGEGSANQGEVQEAMNFAGVKKLPVIFVVEN NEYAISVPIEEQYANKRMADRAKAYGFEGVTVDGSDFTEVYLAFKEAVKAARGKKGPKLI ELMVSRLTSHSADDDQSVYRSKEEIEEMKKNDAVKLFEKQLLEEGYLTDEDIAKIDEEIR AEINQATDEAEAMPDPVPTSILEEVYAK >gi|307679224|gb|GL457023.1| GENE 95 96427 - 97836 824 469 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 6 468 5 457 458 322 38 1e-86 MAEQTDLLILGGGTGGYVAAIRAAQKGLNVTIVEKYKLGGTCLHKGCIPTKALLRSAEVF DTLKQAASFGIETEAASIDFSKIQQRKEGIIEQLHKGVEGLCKKNKIKILAGEGAILGPS IFSPVSGAVAVTFNDPTREEEIIVPKNVIIATGSSPKTLPNLPLDEEFILSSDGMLELEE LPESIAIIGGGVIGVEWASLLNSLGVNVTIIEFLDRLLINESATISKELKKRLEQRGINI LLGSKVQEAKVTGQKVQIEVAGQESLAVDKVMVAIGRQPNINKLGLQNTSVKYTDKGIEV NEFYQTTEGHIYAIGDCIDTLQLAHVAMKEGELAVQHLLGETVEPLNYTNVPRGVYTNPE IASVGYTRETLPADKEVVIGTFNFNGNGKSLVYGETDGFIEVIRDKKTDDLLGVSMIGPH VTDLIAEASTAMYLDAAPIEIGEAIHAHPTMTEVLQEAALDTYGLAIHK >gi|307679224|gb|GL457023.1| GENE 96 97842 - 98924 1233 360 aa, chain - ## HITS:1 COG:lin1407 KEGG:ns NR:ns ## COG: lin1407 COG3426 # Protein_GI_number: 16800475 # Func_class: C Energy production and conversion # Function: Butyrate kinase # Organism: Listeria innocua # 4 352 5 355 355 352 49.0 9e-97 METVLVINPGSTSTKLALFANHDCLAEETLRHSVQELAPFENVVSQTPFRKQMIAEFLET HNITQLAAVVGRGGLLKPIPGGTYLVDQQMLEDLRTERFNTHASNLGAILANEFAEKYHV PAFIVDPVVVDELQPLARISGLKGIHRRSVGHALNQKAVARKIAEDLGKTYEQSNFIVVH LGGGISLGAHQKGRMVDVVNGLDGEGPYTPERSGALPLVEFAQWILEQELTISQVKKLIA GNSGLKSYLGETDLRHIQAQIAAGDQTANYYLKGMCYQIAKSIGEMAVVLEGAIDAIILT GGAAYSQTVVQEISQKITWIAPIKVYPGEMEMAALYEGVNRVLTGEEQALNYSEAKIEQE >gi|307679224|gb|GL457023.1| GENE 97 98943 - 99764 669 273 aa, chain - ## HITS:1 COG:lin1406 KEGG:ns NR:ns ## COG: lin1406 COG0280 # Protein_GI_number: 16800474 # Func_class: C Energy production and conversion # Function: Phosphotransacetylase # Organism: Listeria innocua # 2 273 16 286 288 189 41.0 3e-48 MITVSIAGGSQPEILQLVKKALKEAEQPLQFIVFDTNENLDTENLWKYVHCSNEAAVAQE AVSLVATGQAQILLKGIIQTHTLLKEMLKSEHQLKNKPILSHVAMVELPAGKTFLLTDCA MNIAPTQATLIEIVENAKEVAQKLGLHHPKIALLSAAENFNPKIPSSVLAKEVTAHFNNQ QEATVFGPLSLDLATSEEAVAHKRYSGPIMGDADILVVPTIDVGNCLYKSLTLFGHAKVG GTIVGTKVPVVLTSRSDSTESKFHSLRFAMRQV >gi|307679224|gb|GL457023.1| GENE 98 100046 - 101080 1056 344 aa, chain + ## HITS:1 COG:L171552 KEGG:ns NR:ns ## COG: L171552 COG1434 # Protein_GI_number: 15672559 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 19 311 19 308 310 340 65.0 2e-93 MALLLFFLFIALLGFGILKINNRSILGGITLASGTLLSLVTLLFIGLDKIYLHFKNGDLI TLAIAYLLIPAVFIGICLYFIFNSRTMQTKEGKSVTAELSAGLGLNLLIALPAFLYLLSV GTAQIPYMLFLFLLFLLLMDLLLTFLFAAYVLYSWMYQMIPLKKAVDYIIVLGSGIRSEE VPPLLKSRLDKGIEYYEKNPTAKFVVSGGQGPDEPVAEAFAMKKYLLSQNIPAEAILMED QSTTTYENMLFSKAIIQADWQKMPSDSKQPSVIFSTNNYHVLRGAMYAHRVGLKAEGVGA PTALYFLPTALIREYIALLVHDKRIVLFVFLLVTLLLGISILPI >gi|307679224|gb|GL457023.1| GENE 99 101173 - 101895 630 240 aa, chain - ## HITS:1 COG:no KEGG:EF1665 NR:ns ## KEGG: EF1665 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 240 1 240 240 411 99.0 1e-113 MNANRLKLLMMGLMVLDHISYFVPPEWALIFHVITRCVGVFFGYMAVEGFNYTRNVYRYN GRLYIWAAIMFVGNTLLNHLVNNPAVAVHNNIFFTLALGVSMLIVTKAMLEMPKISLKIV LLISILAILGTGAMFAEGGIVMLPFMLITYLARKRLVLRNCLYGALALFFLVTSFQWLGD WPTTIEMLAYNSDFMFITVLPFISLYNGERGSKAPFFKYLFYGFYPLHLWLIALIANYVH >gi|307679224|gb|GL457023.1| GENE 100 102149 - 102694 549 181 aa, chain - ## HITS:1 COG:no KEGG:EF1666 NR:ns ## KEGG: EF1666 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 176 1 176 232 288 100.0 8e-77 MKKQYYWNIPDNLLNSLKQRKKLYNFYKNEQNKARELVENCQSVLFPELVASLNKIDERI KLLIFYQNLEDCELSEEEIITVIEREYFVTFYETIEEPTTEIISSHSMYYLLQQPTKEML WDLDFSNMLKQGQLVDLMDYQKLTKCYQKLQNQAKNLIEKLNKETFYTFYSQLLLIANAN Y >gi|307679224|gb|GL457023.1| GENE 101 102945 - 103739 947 264 aa, chain + ## HITS:1 COG:BS_yvaG KEGG:ns NR:ns ## COG: BS_yvaG COG1028 # Protein_GI_number: 16080412 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Bacillus subtilis # 1 264 1 264 264 273 54.0 2e-73 MDLHLTNKLALITGSTKGIGKAIAIEMAREGTDVIINGRNEAEVIKVVEEIQTMFPDTHP QAGTADISIESQRATLLEKFPKVDILVNNMGIFEPMEYWDIDDATWEKFFTVNVLSGNAL AKAYLPKMLAQDFGRIIFIASEEAVMPSGEMPQYSMTKTMNLSLAKSLSNLTVGTHVTVN TVMPGSTLTEGVEKMLEDMYADSDIPKEDWEKDFMKNHRSRSQIQRLIRPEEIGRFVTFV ASPDSSSFSGEALRIDGGLVPTIF >gi|307679224|gb|GL457023.1| GENE 102 103868 - 104296 580 142 aa, chain + ## HITS:1 COG:SA2308 KEGG:ns NR:ns ## COG: SA2308 COG1846 # Protein_GI_number: 15928099 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 141 1 141 144 122 44.0 2e-28 MTQQQEALKAYIGLLRTSHRLEQLAKQDVTCYDLNITEFSVLELLLHKGPQTIQKIKEKI LIASSSTTYVIDQLHKKGYVTRTPSEKDRRITYVELTEAGKTLIKEIFPTHAKRIAEAFE QLSSEELTLLQKTLRKITNETK >gi|307679224|gb|GL457023.1| GENE 103 104307 - 105269 1316 320 aa, chain + ## HITS:1 COG:SA2307 KEGG:ns NR:ns ## COG: SA2307 COG0346 # Protein_GI_number: 15928098 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Staphylococcus aureus N315 # 1 319 1 319 319 444 66.0 1e-124 MKKEDQLLGIHHVTAMTSDAEKNYHFFTDVLGMRLVKKTVNQDDIYTYHTYFADDLGTPG TTMTFFDFPNNPKGLKGTNTISRTGFRVPSDAALTYYENRFNEFAVKHTGISEEFGKKVL RFWDFDDQAYQLISDELNQGVAAGTPWKKGPVPTEFAIYGLGPVEIAISYFHEFKEVFEE ILGFHVVAQEGNRYLLEVGQGGNGAQVILVDDDTSSQAQQGYGEVHHVAFRLADRKSLGT WQALFDHLGLQNSGYVDRYYFESLYVRIGHILVELATDEPGFMGDEPYETLGEKLSLAPF LENRREYIESVIKPFNTKRA >gi|307679224|gb|GL457023.1| GENE 104 105282 - 105884 562 200 aa, chain + ## HITS:1 COG:SA2306 KEGG:ns NR:ns ## COG: SA2306 COG0400 # Protein_GI_number: 15928097 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Staphylococcus aureus N315 # 1 184 1 184 197 217 55.0 1e-56 MHSIFKKGHPEAPVFVLLHGTGGDETSLLPIAQELNKQATVLSIRGDVSENGMNRYFKRL AEGHYDLEDLEKRGEALHKFIQQAANEHQFSLDKIIFIGYSNGANIAIQLLLTHPDSYHQ AVLYHPMFPVELTNQPDLTDTSVLLSLGEHDPIVPLPESMRVIQLFQNHGATVQEVWTQS HQLTYQEIKETQTWLAHLSS >gi|307679224|gb|GL457023.1| GENE 105 105963 - 106904 1126 313 aa, chain - ## HITS:1 COG:lin0622 KEGG:ns NR:ns ## COG: lin0622 COG0604 # Protein_GI_number: 16799697 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Listeria innocua # 1 309 1 309 313 449 72.0 1e-126 MKAVVINQYGSKEVLEEAEVTLPKLSEHQVLVKEYATSINPIDWKLREGYLKQMFDWSFP IILGWDVAGVITEVGSQVTDWQVGDKVFARPETTRFGTYAEVTIVDDHLLAKIPETISFE EAAAVPLAGLTAWQALFDHGHLKEGETVLIHAGAGGVGTYAIQLAKEAGAHVITTASAKN HALLRKIGADEVIDYHTTNFAEVLADVDLVFDTMGGEVQKNSFAVLKPNTGRLVSIVGIE DKQLAAEKNISAESIWLQPNGEQLQKIADLMAAGKVKSIIGEVFPFSRQGIYDAHALSET HHAVGKIVVQMAE >gi|307679224|gb|GL457023.1| GENE 106 107022 - 108305 1416 427 aa, chain - ## HITS:1 COG:CAC3584 KEGG:ns NR:ns ## COG: CAC3584 COG0577 # Protein_GI_number: 15896818 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Clostridium acetobutylicum # 1 424 1 438 440 119 25.0 1e-26 MKFRDILKSASTNLMRNKGRTVLTIIAIFIGAFTIALTTGVNIGVNDYIDKQVGSVGGAN QLFIQPKMEMNVGNGTEPSKYNPEKKTSTIQQQSMLAEKDIEKIKKISDVTSVEPMKSVA IDYIKGADKHKYVFSATSALDEMTIDLAAGRKVSQTSQDFEINLSPEYVKALGYTSSKAA VGETVQLGISSSLKGQEQVIEAKIVGVRNASVIQNGLSLMNKALIDKVVSINQADLPEHL KNQYAMIIAEVKKDSTPEQIKDIKKDLDKAGYLATTVEDEIGMIRNIINAITGVLTMFGA IALLAASFGIINTLYMSVQERTREIGLMKAMGLSNGKVFTIFSVEAALIGFFGSILGILG AVGVGNLVNRLATDSFLKALTGFKLIQFSLPSSLTIILVIMFIAFLAGTLPARRAAKLDP IESLRYE >gi|307679224|gb|GL457023.1| GENE 107 108306 - 108986 288 226 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 3 202 4 199 223 115 35 2e-24 MAVIEAKNIKKSYGKNETKFDALKGVDLKVEKGESVAIIGKSGSGKSTFMHILALLDQPT SGDIYLNGKNVTSIRKKVLNKTRNEEFGFVFQQFFMNAKDTVLNNVLLPLKIGGISGSKR KKMALDALKAVGLEDKVQNKANNLSGGQKQRVCIARALVNNPQIIFADEPTGNLDSATGK KIEELLFDLNKNKGITLIIVTHDPDLAARCDRQVHVRDGLIVGGDE >gi|307679224|gb|GL457023.1| GENE 108 109179 - 109910 399 243 aa, chain - ## HITS:1 COG:no KEGG:EF1674 NR:ns ## KEGG: EF1674 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 243 1 243 243 345 97.0 9e-94 MKFKTALQYRVIYQARSLAIYFGIYALFGILFPLIGLLFSNDVNTVSSDAVIPCLVFMGI LSFLGVNTHFKLFIQNGLSRWTIFLVNFVSNAILSLVGSLAVLVLIKVFSGNFISHFQLS MKLIDVYAQGNFFMSWLLFFILLMLSGSLGLLAGVFNDRIDGVKKLIVLLLLLMIPILLG TIAQLGGAPMRLRMLHILQTMVGYQSTGFTVLPLFLTISCFVGINLGLAYLLNKHREIKR VNA >gi|307679224|gb|GL457023.1| GENE 109 109912 - 110766 752 284 aa, chain - ## HITS:1 COG:BH3493 KEGG:ns NR:ns ## COG: BH3493 COG1131 # Protein_GI_number: 15616055 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Bacillus halodurans # 2 278 4 282 283 172 35.0 5e-43 MSLRVESVSKKYHQKKALDNISITFEKETIYGLLGRNGAGKSTLLNIINNRSFATSGSVK LAGETVTDNEAALTHIYLMSEDNLFPPQLKIKDIFKTTEGFYGSFDWSLAEQMLSDFGLD SKKTFKKLSTGYRSIAKLIVALSVPCEYIFLDEPVLGLDANHRELFYTYLIETYQERPRT FVISTHLIEEIANLLEDIIIIDQGKLIRAESIETILKNGRIVSGPKEQVERYTQSLEILG MDTLGGAVTAYVYGDLPTEKAEVQIAPLNLQTYFVQLTNRKKEK >gi|307679224|gb|GL457023.1| GENE 110 110763 - 111131 558 122 aa, chain - ## HITS:1 COG:BH3492 KEGG:ns NR:ns ## COG: BH3492 COG1725 # Protein_GI_number: 15616054 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 1 119 1 119 129 114 46.0 6e-26 MEFNFSGEKPLFQQVADQIAEGIFNGAYLEGEQIPSTTEISKSYQINPATVLKGMNLLVE RQLIEKKRGIGMFVLPGAQERVRSARKEEFLNKEVLEVVAEAKKLGITAEQLKQLIERGY EA >gi|307679224|gb|GL457023.1| GENE 111 111280 - 111723 466 147 aa, chain - ## HITS:1 COG:no KEGG:EF1677 NR:ns ## KEGG: EF1677 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 147 1 147 147 165 99.0 7e-40 MIRKTILASSILGVGLLIGACGNQTQTQMNSTNTSESSQSKVTESSRKSSESASNNEGVS SDSSKSTSSTTESEILKGLAEEKTLKEKIPSLNQTTIKKVTDNEYKRILVMEEKATGTTY KSILIKKQNRLKIVNETTDELLYNGTL >gi|307679224|gb|GL457023.1| GENE 112 111844 - 112398 586 184 aa, chain - ## HITS:1 COG:lin1310 KEGG:ns NR:ns ## COG: lin1310 COG0681 # Protein_GI_number: 16800378 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Listeria innocua # 27 182 25 179 180 137 44.0 1e-32 MKKKRDYVGYLMYFLKILVPAIVAVFILRGFFLIPVRVDGHSMQKTLNQGDMIVMEKFSA IKRFDVVVFKTDTGSILIKRVIGLPGEAVRYENDQLYVNNQPIAEPYLTKNRKKDHETMP YTTNFDSKELLMQEKLPKDSYFVLGDNRRMSKDSRSFGAIHADQILGKAQFVYYPLTHMK IIPK >gi|307679224|gb|GL457023.1| GENE 113 112417 - 113850 1737 477 aa, chain - ## HITS:1 COG:BS_ctpA KEGG:ns NR:ns ## COG: BS_ctpA COG0793 # Protein_GI_number: 16079017 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protease # Organism: Bacillus subtilis # 38 476 32 464 466 301 44.0 2e-81 MKNKRTVPFYQYIISLLCVAFLAGGSSYIYFDHRVKKMSQEGAITNADLSKVQDLYNEIS TNYVGEVDKNELVEGALKGMSEAIGDPYSTYLNESAANDLNESLSGDFEGIGATMTMKDG EPVVAEAPVADSPAEKAGIKEGDIIEKVDGTATKGMKLAEVVSKVRGKKGTSVELTIQRE GETKNISIKRGKIPVKTVTGELDKKDAQIGSIKITSFGKKTYQELKETITNLRDKGAKSF VIDVRQNPGGLLDQAERMASMFLKNGETIVQFEDKKGRTMKEVASKELDDGFKVKEPVAV IIDGNSASASEIFAAALHESANVPLIGTKTFGKGTVQTVKDLNDQTEIKLTVLKWLTPKG EWINEKGIEPTIKADYPEYAYLKLIPRDKTLKEGDQSEDIQNLNAILAVLAYLVDENNAN YTAETKAAVSDLQQKNGLPVTGEIDNETATKIEATLGKLILENDAAYDTAVKEIQKN >gi|307679224|gb|GL457023.1| GENE 114 113947 - 114165 317 72 aa, chain - ## HITS:1 COG:lin1971 KEGG:ns NR:ns ## COG: lin1971 COG4479 # Protein_GI_number: 16801037 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 68 1 69 77 72 60.0 1e-13 MRRSFYHYLMTLKGPAKDSETDFANEAAKDIQFPKQTEDYHELSSYLEMNADYLSNMDIF DELWEKYLENNK >gi|307679224|gb|GL457023.1| GENE 115 114171 - 114686 659 171 aa, chain - ## HITS:1 COG:SPy0466 KEGG:ns NR:ns ## COG: SPy0466 COG0225 # Protein_GI_number: 15674584 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptide methionine sulfoxide reductase # Organism: Streptococcus pyogenes M1 GAS # 3 170 2 169 169 243 70.0 1e-64 MEEKAIFAGGCFWCMVQPFDTQPGIISVVSGYTGGHVPNPTYEQVLTHTTGHTEAVEITF DPAIISYEQLVDIYWQQTDPTDAFGQFQDRGDNYRPVIFYRSQEQKEIAEKSKERLANSG RFTEPIVTTIEPAAPFYPAEEYHQDFYKKDALRYGLSHQRRSEFIEEKWSD >gi|307679224|gb|GL457023.1| GENE 116 114703 - 115347 660 214 aa, chain - ## HITS:1 COG:SPy1491 KEGG:ns NR:ns ## COG: SPy1491 COG4698 # Protein_GI_number: 15675395 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 23 209 8 193 195 125 37.0 8e-29 MNEEKPKTSKSIKKTQPTNLKRNPWKIAFLVLVGLVIGSVAFVTFRATQVREPDLKKIPA IVEKEGEPVVTIQSKKQQVNKLIDFYLADFQKGSEIKYKFYLENDALLNGTFQVLGHDIP FYLYFDPYVMANGNVQLKAKSLSIGTLGLPIKEVLKFAKRSYKLPKWVEINPDDQTVLLR LDQFRMQNGLFVRAEKINLVDDDIRMNIYLPKEK >gi|307679224|gb|GL457023.1| GENE 117 115349 - 116248 1012 299 aa, chain - ## HITS:1 COG:SPy1492 KEGG:ns NR:ns ## COG: SPy1492 COG2755 # Protein_GI_number: 15675396 # Func_class: E Amino acid transport and metabolism # Function: Lysophospholipase L1 and related esterases # Organism: Streptococcus pyogenes M1 GAS # 23 280 27 273 286 257 49.0 2e-68 MKKQTQHILLTVLTPILIALGVFTLLSVAIPKAKPLLKQEKVATTAQKNQKEVIHYTAIG DSLTEGIGDLTNSGGFVPIVADDLKEHYNLNGVQTDNFGKNGDRSDQILKRIKEKPEIQK GLASADVITLTVGGNDLMKVISSNIFDLKVSSFNRPQKAYQRRVRRLLEEIREYNEKAPI YVLGIYNPFYLNFSEITEMQEIVDNWNQATEEMVQEQKRAYFIPINDLLYKGRGDEVGVT GGDSETTGSSASKEDLNNLLYEEDRFHPNNLGYQIMAGAVRDEMVKTEKEWITKSEGSE >gi|307679224|gb|GL457023.1| GENE 118 116352 - 117194 995 280 aa, chain - ## HITS:1 COG:SP1112 KEGG:ns NR:ns ## COG: SP1112 COG1307 # Protein_GI_number: 15900979 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 276 1 274 279 285 53.0 1e-76 MTNVKIVTDSSCTMEKSLRDELNIHMMPLSIMVDGVVYPDDDHLPGEKFMDMMANAKALP KTSQPPIGEFVELYDRLGEDGSEVISIHMTKGLSGTVEAARQASNLSSSKVTVIDSDFTD QGLSFQVIQAAKLAQAGAGVPEILAEIERVKQNTKLYIGISTLDNLVKGGRISRTTGLLS NIFNMKVVMDFENTELIPVAKGRGVKTFNKWFDELKSELSKIPNVRQIGISHADGLELAN GFKEGLQAIFKDMDIPVLHTNPVIATHTGKNAFAIMYYTD >gi|307679224|gb|GL457023.1| GENE 119 117326 - 117979 721 217 aa, chain + ## HITS:1 COG:L97827 KEGG:ns NR:ns ## COG: L97827 COG1272 # Protein_GI_number: 15672479 # Func_class: R General function prediction only # Function: Predicted membrane protein, hemolysin III homolog # Organism: Lactococcus lactis # 1 216 1 215 217 194 54.0 9e-50 MEKTHFSKKYLIVNEVLNAVTHGIGAGLSIAGLVILLVKGARLGSPIHVVSYAIYGSMLI LLFLSSTLFHSLIFTRAKKVFQVFDHSSIFLLIAGSYTPFCLISIGGWLGWTLFSLVWLI AIVGIVYKSLTLHKQETVKNISTIIYIVLGWLCIIAARPLYESLGFTGTALLVAGGVSYT LGAAFYSLKNVRFMHVVWHLFVMLAAILMYFSVLFYT >gi|307679224|gb|GL457023.1| GENE 120 118173 - 118370 235 65 aa, chain + ## HITS:1 COG:no KEGG:EF1686 NR:ns ## KEGG: EF1686 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 65 1 65 65 103 100.0 3e-21 MEAIRRVGFLFFVLVIGIFLGTLGLRLAFMIVTPLFILWFMSWDEKRYTRTRKQQQARYV YRKFP >gi|307679224|gb|GL457023.1| GENE 121 118476 - 118988 868 170 aa, chain - ## HITS:1 COG:L22735 KEGG:ns NR:ns ## COG: L22735 COG0503 # Protein_GI_number: 15672615 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Lactococcus lactis # 1 170 16 185 185 253 72.0 1e-67 MDLRDYIASIPDYPEKGIVFRDISPLMANGDAYREATKQIVDYAKEKRIDMVVGPEARGF IVGCPVAYELGVGFAPVRKKGKLPRETIEVTYDLEYGSDTLTLHKDAITPGQRVLICDDL LATGGTIKATIELVEQLGGIVVGCAFLIELMDLHGRDKIDGYDIVTLMEY >gi|307679224|gb|GL457023.1| GENE 122 118991 - 121303 2208 770 aa, chain - ## HITS:1 COG:SPy0926_1 KEGG:ns NR:ns ## COG: SPy0926_1 COG0608 # Protein_GI_number: 15674946 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-specific exonuclease # Organism: Streptococcus pyogenes M1 GAS # 1 571 1 570 580 538 50.0 1e-152 MKKSNYQWQLQTKTELPVEFIEQLKKEEINPLIGQLLWHRNIRTEEALRKFLHPTIEDIY DPFLMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGMVQYFLPNR FVHGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPE AYAIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELPIELLDLVAIGTIADLVSLTDENR TFVKMGLQMIQTGDRIGLDVLLQEAGVKKEAISEESIGFTIGPRLNALGRLGEAAPGVEL MTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLIDPNAPVHILAKQGWHEGVLGIV AGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVREQFTHFGGHHMAAGMT LPVENIPFVQEHLAHFIEKNQIDMANGQELLISESLAVSQATTTFIDQLRILAPFGTDNT VPTFVFKEITPTQIRQIGADNAHLKFQMNQEGAQLDAIAFQMGPQADELAQGTADVAGQL SINEWNGRKKPQLMVTDFAVLGRQLFDFRGKNNQTKPIPSEATAYLLFDEKNQKFISDPT ANIIVWSNQEELVEAVSQNQIEQLVFVDCPVEAITVKEIVEATEIQRIYMMFISPEEAYL NGMASREQFATLYKFILQQKEVNLRSQLSKVANYLNIQEKLLIFMIQVFFDLGFVTIESG VLNSIEKPDNRPLTESQVYQQRLKKIKTEEFLLYSDCQTIQQWLWNEEDK >gi|307679224|gb|GL457023.1| GENE 123 121458 - 121925 690 155 aa, chain - ## HITS:1 COG:BS_yrvD KEGG:ns NR:ns ## COG: BS_yrvD COG5416 # Protein_GI_number: 16079817 # Func_class: S Function unknown # Function: Uncharacterized integral membrane protein # Organism: Bacillus subtilis # 1 77 1 77 107 62 40.0 3e-10 MKNQWRVILGLVLVLIVVIFAVLNNQAVPVNFGFTKISGPLILIILGSAIIGALVGLLTS TTTIWNQRKELKAVQKELDIYKNDMDKLVKEETEKVQRSFDNQLADLQAKQAAAPQVAEP VVNEQTSNTEVDATPVSGSRIDRYVKPRVNEEEQK >gi|307679224|gb|GL457023.1| GENE 124 121942 - 122730 948 262 aa, chain - ## HITS:1 COG:SP0675 KEGG:ns NR:ns ## COG: SP0675 COG0300 # Protein_GI_number: 15900576 # Func_class: R General function prediction only # Function: Short-chain dehydrogenases of various substrate specificities # Organism: Streptococcus pneumoniae TIGR4 # 8 262 4 251 251 234 45.0 1e-61 MDLTNKVVVVTGGSAGLGEQICYEAAKQGAVVVVCARRINLIGKVREQCAALSGREAFSY QLDIADPESVERVVEAISAEVGSIDVLVNNAGFGLFENFVEIDLAVARQMFDVNVLGMMT FTQKVAIKMIEAGQGHIINVASMAGKMATAKSTVYSATKFAVLGFSNALRLELKPLGVAV TTVNPGPIQTEFFDKADPTGTYLAAVDKIVLDPTKLAKEVVGSMGTSRREINRPFVMEAA ARFYTLFPHLGDFIAGNILNKK >gi|307679224|gb|GL457023.1| GENE 125 122731 - 123672 1005 313 aa, chain - ## HITS:1 COG:L18686 KEGG:ns NR:ns ## COG: L18686 COG1234 # Protein_GI_number: 15672612 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Lactococcus lactis # 1 299 1 300 307 342 57.0 4e-94 MEIQFLGTGAGVPAKHRNVTGIALKLLDERNAVWLFDCGEGTQLQILKSSIRPRKIEKIF ITHLHGDHIFGLPGLLSSRSFQGGTEPLEIYGPVGVADFVKTSLRVSQSRLSYPLKFIEL TKENDVIFKDKQFTVRCNILDHGITSFGYRIEEAAHEGELQVEKLQALGIPSGPLYGKLK RGETIVFDGQEINGQAFVGERKPGRIVTILGDTRKTKNSVTLARRADVLVHESTFNKHEA KMAKAYFHSTSQQAAEVAKEAQVKQLILTHISARYLTKEAYQLQEEAQEIFPNTKIVKDM DIIEIPFANEGGA >gi|307679224|gb|GL457023.1| GENE 126 123887 - 124453 623 188 aa, chain - ## HITS:1 COG:no KEGG:EF1692 NR:ns ## KEGG: EF1692 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 188 1 188 188 330 100.0 3e-89 MAKRIIIMNFDIESKSYQAFSEIKKMQAERQLKGEQMAVVTHVNDGQHQFKINDFIDFTG NNHTSKDSMIGMLVGILGGPLGILFGWFAGSMYGASKDAKEIQEAQTVFEHVIQKIDEGQ TGLLLIAEEEDNRPLNQLVMFDLGGEITRLDLEEVQQEINDANEVANEAKQSWQAKKEQH KEATSKEE >gi|307679224|gb|GL457023.1| GENE 127 124574 - 124819 377 81 aa, chain - ## HITS:1 COG:L9737 KEGG:ns NR:ns ## COG: L9737 COG1837 # Protein_GI_number: 15673550 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein (contains KH domain) # Organism: Lactococcus lactis # 3 75 4 75 79 83 65.0 8e-17 MADVKELILTIVRPLVSQPEAVSLEIEESTDFLEYNLTVAKEDIGRIIGKQGRVAKAIRT IVYSVRIDGPKKVRLNILDGK >gi|307679224|gb|GL457023.1| GENE 128 124831 - 125124 493 97 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227518885|ref|ZP_03948934.1| ribosomal protein S16 [Enterococcus faecalis TX0104] # 1 97 1 97 97 194 100 3e-48 MEVYLIMAVKIRLKRMGSKKSPFYRIVVADSRSPRDGRFIETVGTYNPLKDPAEVVLKED LVLDWLSKGAQPSDTVRNILSKEGVMKKHHEAKNVKK >gi|307679224|gb|GL457023.1| GENE 129 125253 - 126056 682 267 aa, chain - ## HITS:1 COG:no KEGG:EF1695 NR:ns ## KEGG: EF1695 # Name: not_defined # Def: acetyltransferase # Organism: E.faecalis # Pathway: not_defined # 27 267 1 241 241 437 98.0 1e-121 MNKKINWRRQLTQLEKQTLTELKNKEMIKQGTFYKLEQTFPEESAYTYYGLYRKEQTIQA YIVGYCFDGETLEATIVAPNVGPFFEELVQELEKQAALWGMKEVFLVMDDKQSVGLNYFN RQGIVPAFSEQYLVFQRETYSQDLAKLTLLRPQVADLHSLARLLEGTPLPEDLQRTLIYK ENNQLLATLRLDHFENEWGIYGFVVTKTQRGRGLGRQVLQSALRMILEKSASATIFLEVE TENQAALHLYQTEGFQVRNQYNYYQIL >gi|307679224|gb|GL457023.1| GENE 130 126198 - 126752 750 184 aa, chain + ## HITS:1 COG:NMB1796 KEGG:ns NR:ns ## COG: NMB1796 COG0431 # Protein_GI_number: 15677635 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Neisseria meningitidis MC58 # 1 181 3 187 190 155 41.0 4e-38 MTKKIGIFVGSLRKDSFNKLVAKTMADLFPADFEPVFINIGDLELYNQDLDDEGTPTEAW TTFREEVKQVDGVMFVTPEYNRSVPAVLKNALDVGSRPYGESVWDKKPGLVVSVSPGAIS GFGANHHLRQSLVFLNVPTLQQPEAYIGGITNFIGEDGKIIDGTVGFLQSIVDAYVDFFN RLTA >gi|307679224|gb|GL457023.1| GENE 131 126873 - 127625 724 250 aa, chain + ## HITS:1 COG:BH0408 KEGG:ns NR:ns ## COG: BH0408 COG0789 # Protein_GI_number: 15612971 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 1 239 1 234 255 154 40.0 1e-37 MEYTIKKMASLSGVSARTLRYYDEIGLLQPARINSSGYRIYGQAEVNRLQQILFYRELDL KLDEIKEILEQPDFNVEQALYEHQQKLLEKRNEIDRLLASVQQTLHHYKGEINMSDQQKF EAFKQQRVQENEEKYGKEIREKYGNETIEQANKKYLNLTEKDMQAMQNVEKDLFSKLAMY QKSPKLTSQLAQEIFQLHKDWLMYSWSSYSPEAHKGLGLMYVGDERFTSYYEQHGAGFAE ALNAIIQNYA >gi|307679224|gb|GL457023.1| GENE 132 127730 - 129148 1965 472 aa, chain - ## HITS:1 COG:SP1287 KEGG:ns NR:ns ## COG: SP1287 COG0541 # Protein_GI_number: 15901147 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Streptococcus pneumoniae TIGR4 # 1 463 1 510 523 587 64.0 1e-167 MAFESLTNRLQQAMSKIRRKGKVSEADVKEMMREIRLALLEADVNLQVVKDFTKRVRERA VGVEVLESLSPAQQIVKIVDEELTKTLGSETVELNKSSKIPTVIMMTGLQGAGKTTFTGK LAKHLMKTENARPLLIAGDVYRPAAIDQLKVLGQQLEVPVFDMGTDANPVEIVRQGLALA KEKKNDYVLIDTAGRLHIDEALMDELKQIKELANPNEILLVVDAMTGQDAVNVADSFNEQ LGITGVVITKMDGDTRGGAALSIRAVTGAPIKFVGSGEKLTDLEIFHPDRMSSRILGMGD MLTLIEKAQQDYDEKKAEELAQKMKENSFDFNDFIEQLDQVMGMGPIEDLLKMIPGMSNM PGIENVKVDPKDVARKRAMVLSMTPAERENPDLLNPSRRRRIAAGSGNSVVEVNRMIKQF KESKKMMQQMSKGDMNIPGMDQMLGGGVKGKLGKMAMNRMMKKNKKKKKKKR >gi|307679224|gb|GL457023.1| GENE 133 129153 - 129536 484 127 aa, chain - ## HITS:1 COG:SP1288 KEGG:ns NR:ns ## COG: SP1288 COG2739 # Protein_GI_number: 15901148 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 16 126 1 107 110 113 66.0 1e-25 MKSVTYKGLKMGARLMEMEKTNRMNALFEFYSTLLTEKQMNYMELYYADDFSLGEIAEEY EVSRQAVYDNIKRTEKILEEYEKKLHLYSNYVVRKEYLEQLQQYVQETYPKDSEIKKYIE QIQEIEE >gi|307679224|gb|GL457023.1| GENE 134 129575 - 130039 492 154 aa, chain - ## HITS:1 COG:lin2433 KEGG:ns NR:ns ## COG: lin2433 COG1683 # Protein_GI_number: 16801495 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 146 1 146 147 156 56.0 1e-38 MIGISSCLGGICCRYDGKSQEQEALKQLVTNGKAIMICPEVLGELPIPRPPAEIIGGDGF DVWANTAYVYTDNGEDVTEAFKAGAQRAYQKLKTQQITTLILKEKSPSCGSQLIYDGQFS GIKKAGVGVATAYFIQQGMTVYSEETWQLADISF >gi|307679224|gb|GL457023.1| GENE 135 130202 - 130912 899 236 aa, chain + ## HITS:1 COG:BH3157 KEGG:ns NR:ns ## COG: BH3157 COG0745 # Protein_GI_number: 15615719 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus halodurans # 2 235 3 236 239 270 54.0 2e-72 MKKVLVVDDEPSILTLLTFNLEKEGYQVTTSEDGKNGFELALSNQYDFIILDVMLPGMDG LEITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRRL KPTTTETLQEDTPKAPLVIGEIRVDEQNYEVFVRNQPIELTPKEFELLVYFMKRKDRVIN RETLLERIWQYDFAGQSRIVDVHISHLRDKIEPDPKRPVYLVTVRGFGYRFQEPKR >gi|307679224|gb|GL457023.1| GENE 136 130909 - 132684 1574 591 aa, chain + ## HITS:1 COG:lin2643 KEGG:ns NR:ns ## COG: lin2643 COG0642 # Protein_GI_number: 16801705 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 10 585 16 588 591 256 30.0 8e-68 MKKRLRIEYFLVAAVMLLLFVGSIAATNFFFQKEMVAQQETYLRRKNTLLTDQLPPSVFE KGQLTNQQQLLVTHALDDAEERVTLLQKNGTVFFDSSQNEPLESHKKRPEIAAVLSGATY GSALRKSKTLNKELLYVATPVLKSGEIVGIIRISEQTALFSKNIQSFRRYIIFTFGILFL LITLFIFLLLRQKNQPLVTVLPILKRMLKHPDENRSIIQQSSEWNELYETINLLSQQVSQ TYKAYTSADEQFHELLDELMIGVFIIDTQGRLRLLNPKMQEMLGLSAKNMQSNYLEVIQD ADLIHLIHQVVAEKNSLHQEITVTQGPTPLRLDLSLRYLDDQSANDYQVLGIAYDLTRVR QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPEVLNQFLHIMQKDAQRLQQLI QEILELSRGSATIPYAEQEITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKDQERIFERFYRVD KARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLPLTKKEA >gi|307679224|gb|GL457023.1| GENE 137 132726 - 133616 1143 296 aa, chain - ## HITS:1 COG:lin2642 KEGG:ns NR:ns ## COG: lin2642 COG0226 # Protein_GI_number: 16801704 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Listeria innocua # 1 295 1 300 302 360 65.0 2e-99 MKKRVIAATMLSLGLLLTGCGAQGGTTEKSSEADSNKPVKIVAVGSTALQPLVDAAKDQF TQEHPNYTVSVQGGGSGTGLSQVADGAVTIGNSDVFAEEKDGVDASKLVDHRVAVVGMGP VVNKEVGVKNLTKQQLIDVFTGKVKNWKEVGGKDQEIVVINRANGSGTRATFEKWGLDGA KPVQSQEQDSSGTVRKIVEQTPGAISYLAFSYMDDSTVALSIDGVEPKEEHVKDNSWKIW SYEHMYTKGEPNKEVKAFLDYMVTDDVQKTIVKDLGYLAITDMQVERDVNGKVTEK >gi|307679224|gb|GL457023.1| GENE 138 133727 - 134905 1441 392 aa, chain - ## HITS:1 COG:SP0035 KEGG:ns NR:ns ## COG: SP0035 COG0436 # Protein_GI_number: 15899981 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 385 1 386 389 513 66.0 1e-145 MDLTNRFNRQVNKIAVSLIRQFDEQVSGIEGILKLTLGEPDFNTPEHVKKAAKEAIDANF SHYTGMSGLLDVREAAAYFMKEKYHLTYQPGTEILVTVGATEAISASLLAILEQGDKVLL PAPIYPGYEPIITLAGAEPVYLDTRGNDFVLTPEMIEAAMAEHGEQVKAIILNYPSNPTG VTYNRQELQAIADVLKKYDIFVISDEIYSELTYDESHVSIAEMLRDQTILINGLSKSHAM TGWRIGFIFAPAILTAEIIKVHQYLVTAAATVSQKAAVRALIEGMHDAEIMKEEYRKRRD FVYEQMTQLGFEVARPNGAFYIFAKIPTGYEQDSMKFCIDLAQKEAVALIPGISFGPEAE GYVRISYASDMDKLTTAMERIAHYMATQRVTH >gi|307679224|gb|GL457023.1| GENE 139 135067 - 137757 2994 896 aa, chain - ## HITS:1 COG:L130682 KEGG:ns NR:ns ## COG: L130682 COG0383 # Protein_GI_number: 15673480 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-mannosidase # Organism: Lactococcus lactis # 1 891 1 891 899 1083 60.0 0 MTKKKVYIVSHSHWDREWYLPYEEHHMRLIELVDNVLDLIENDPEFNSFHLDGQTIILDD YLQVRPEKKEAVKKAVQAGKLKIGPFYILQDDFLISSESNVRNMLIGHLESQKWGAPVQL GYFPDTFGNMGQTPQMMQLANLPAAAFGRGVKPIGFDNQVLESDYSSQYSEMWWEGPDQT KIFGLLFANWYSNGNEIPSEKEAAIAFWKQKLADVERYASTNHLLMMNGVDHQPVQRDIT KAIALANELFPEYEFIHSNFDDYLKAVQEELPEDLGTVTGELTSQETDGWYTLANTSSAR VYLKQWNTKVQRQLENIAEPLAAMAYEVTGDYPHDQFDYAWKTLLQNHPHDSICGCSVDE VHRGMMTRFENANDVGHFLADEATRQLTEAIDTSVFPEKAHPFVLFNTSGYQKTEVVTVE VEIERLPFYTGKPEDLYHELKQKATPDYQVIDPTGKAVASRIVKEDVRFGYDLPKDAFRQ PYMAKYLTVELSVKEMAPFSWDSFALIQGKTKAFEGSLLAQPATNEMENEFIQVKIENNG SLTIADKKTGETFSKLLTFEDTGDIGNEYIFFKPTEDQGITTENVTAEITNKENSPVKAS YQIKQTVMLPVSADERLEEEQKAVREFRERQAQRSTTLRPFEITTVVTMIKESNQLFFET TINNQIKDHRLRVLFPTGMVTETHEADSIYEVVTRPNQVSDAWENPTNPQHQQAFVNVHD QNKGVTIFNEGLNEYEVLADGTIAVTLIRCVGELGDWGYFATPEAQCQGEYTFKYGLSLH GKPEERFATYQQAYSAQIPFTAATTTRHEGKLAPNHVYLTTAEGPIGWTAVKRQEQTNHL VVRGFNLTAQNIPCELHKETQPATCLTNVLEEPLTPAIEVDAPLRPFEIRTWRFEK >gi|307679224|gb|GL457023.1| GENE 140 137769 - 139058 1582 429 aa, chain - ## HITS:1 COG:L133416 KEGG:ns NR:ns ## COG: L133416 COG3538 # Protein_GI_number: 15673481 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 6 429 5 431 431 649 71.0 0 MVYTEVPKSVATFMETITEKCGEAHQDWAKNFQAAFANTLLTTVKRQEDGTTFLLTGDIP AMWLRDSTAQVRPYLVIAKEDEDLAQMIAGLVKRQFRYICIDPYANAFNETDNHAGHQTD KTEMNGWIWERKYEIDSLCYPVQLAYLLYKNTGMTEQFNSDFVEGVKKILNVFTTEQDHA QSPYLFERDTWRQEDTLVEAGKGIPVGKTGMTWSGFRPSDDACQYGYLVPSNMFAVVILG YIQEIFSDVLEDATIVAIAKKLQEEIEEGIQTFGRTKNQNNETIYAYEVDGLGNASVMDD SNVPNLVAAPYLGYCSTEDEQYLTTRQTLLSKENPYFYEGKYAKGIGSSHTPENYVWPIA LAMEGMTTKDKAEKERILDLLVATDAGTHLMHEGFDVDNPENYTREWFSWANMMFCELVM DYFDIRVEK >gi|307679224|gb|GL457023.1| GENE 141 139215 - 140261 969 348 aa, chain + ## HITS:1 COG:L0146 KEGG:ns NR:ns ## COG: L0146 COG1609 # Protein_GI_number: 15673482 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 1 342 1 340 345 298 45.0 1e-80 MKQPLYQQIIDYLQNEIDSGRLPVGAQVPTEKELSAQFNVSRITSKRALTELETQGVIQR HQGKGSFVQAPKHPLHTSLNKVLFLLPFADDLSVGNFYSGLAPTIQAAGLEVFMTSPNFL REKNAADIVNEFAGLVYYAATSNDYLDLLFELALMNFPVVVLDKKIHDLPFATIQSDNFA GGKTATERLIGLGHTKIGYILSGSPALQSVRQRYLGYLQALKEANLAFHTAITETNLLDE HNFKQYFEAHQLTAVVCDNDFSALHCLRNCKNLGIHVPEELSIIGFDDIQAAAFVEPPLT TMAQDFKEMGKLAGEVLLQTMQQDIQIIEDIQVPVTLIERETISTVSK >gi|307679224|gb|GL457023.1| GENE 142 140450 - 141379 899 309 aa, chain - ## HITS:1 COG:SPy0824 KEGG:ns NR:ns ## COG: SPy0824 COG0583 # Protein_GI_number: 15674863 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 1 298 1 298 304 230 41.0 3e-60 MNIQQMKYVAAIANNGSFREAAKKLFITQPSLSNSIRELEEELGISLFLRTNKGAFLTEE GMVFLEQAEKVLVQMELLENRYRETVTSERFSISSQHYDFLGEVIAKVLKKYGDQYKDFR VFETTTLKVIEDVKGFHSELGIIYLNEQNSVSIERYLEQANLAYEVISTFNTHIFLGNHH PLAKQKEIHLEELVPYPQVRFNQEGSNFSYFSEDLVEIPEQESVIHTTDRGTLMNLLVET NAYASGSGVVTGFTKKEIRLVPLAPALENRICLLFPKNREISPIGRYFIKELKALFKKEV DTKTFSTKE >gi|307679224|gb|GL457023.1| GENE 143 141398 - 142096 543 232 aa, chain - ## HITS:1 COG:BH0360 KEGG:ns NR:ns ## COG: BH0360 COG3338 # Protein_GI_number: 15612923 # Func_class: P Inorganic ion transport and metabolism # Function: Carbonic anhydrase # Organism: Bacillus halodurans # 8 228 47 270 275 126 34.0 4e-29 MKKIKNMDVEWSYTGNDGPEHWHTLCDWFAEGAKFAYQSPIALEKESAETVNSQITFHYK KEEFTEKEFKNTFHFVPPNTESYVMFENVAYHLTDIHFHMPSEHLLSGKQYPLEFHLVHM NDAGENLVVGCLFTITEEENRFSEANHPMDWENGTHQQWFNPSIFLPEERLHYHYVGSLT TPPTKGPVKWFVFDTIQKMDQAFLNKIKEGMLAFNNRPLQPLNGRKIYFSND >gi|307679224|gb|GL457023.1| GENE 144 142294 - 142926 956 210 aa, chain - ## HITS:1 COG:lin1945 KEGG:ns NR:ns ## COG: lin1945 COG0461 # Protein_GI_number: 16801011 # Func_class: F Nucleotide transport and metabolism # Function: Orotate phosphoribosyltransferase # Organism: Listeria innocua # 4 210 3 209 209 272 66.0 3e-73 MTKVAKKIAKDLLDIEAVFLNPNEPFTWASGIKSPIYCDNRITMSYPAVRKEIAEGLAAK IKETFPEVEVIAGTATAGIPHAAWVADILGLPMVYIRSKAKDHGKGNQIEGRISEGQKMV VIEDLISTGGSVLEAAEAAEREGATVLGVAAIFTYELPKGTANFADKQMTLLTLTNYSTL IDAALEANYIEEKDVTLLQEWKKDPENWGK >gi|307679224|gb|GL457023.1| GENE 145 142928 - 143641 906 237 aa, chain - ## HITS:1 COG:L181692 KEGG:ns NR:ns ## COG: L181692 COG0284 # Protein_GI_number: 15673327 # Func_class: F Nucleotide transport and metabolism # Function: Orotidine-5'-phosphate decarboxylase # Organism: Lactococcus lactis # 3 235 4 236 237 284 62.0 9e-77 MHDRPIIALDFPTQKEVAVFLEKFPKEEALFVKVGMELFYAEGPAIVRWLKEQGHDVFLD LKLHDIPNTVEKAMTNLAKLGVAITNVHAAGGVRMMQAAKEGLIKGTQPGAKVPELIAVT QLTSTSEEEMHHDQLINVPLETSVIHYAKCAEKAGLDGVVCSALEARGIQEATKQTFICL TPGIRPAGSAVGDQQRVVTPQHAREIGSTYIVVGRPITQAENPYEAYQEIKKDWSGK >gi|307679224|gb|GL457023.1| GENE 146 143631 - 144569 999 312 aa, chain - ## HITS:1 COG:L182555 KEGG:ns NR:ns ## COG: L182555 COG0167 # Protein_GI_number: 15673328 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Lactococcus lactis # 4 309 5 311 311 443 73.0 1e-124 MMKNPLAVSIPGLTLKNPIIPASGCFGFGEEYANYYDLDQLGSIMIKATTPQARYGNPTP RVAETPSGMLNAIGLQNPGLDVVMQEKLPKLEKYPNLPIIANVAGACEEDYVAVCAKIGQ APNVKAIELNISCPNVKHGGIAFGTDPDIAFQLTQAVKKVASVPIYVKLSPNVTDIVPIA QAIEAGGADGFSMINTLLGMRIDLKTRKPILANQTGGLSGPAIKPVAIRLIRQVASVSQL PIIGMGGVQTVDDVLEMFMAGASAVGVGTANFTDPYICPKLIDGLPKRMEELGIESLEQL IKEVREGQQNAR >gi|307679224|gb|GL457023.1| GENE 147 144566 - 145357 883 263 aa, chain - ## HITS:1 COG:SP0963 KEGG:ns NR:ns ## COG: SP0963 COG0543 # Protein_GI_number: 15900840 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases # Organism: Streptococcus pneumoniae TIGR4 # 8 263 1 250 250 263 48.0 2e-70 MQRKQEMMTIVAQKQLAPRIYQLDLQGELVKEMTRPGQFVHIKVPRADLLLRRPISINQI DHSNETCRLIYRVEGAGTEVFATMKAGEQLDILGPLGNGFDITTVAAGQTAFIVGGGIGI PPLYELSKQLNEKGVKVIHFLGYASKEAAYYQQEFMALGETHFATDDGSFGAHGNVGRLL SEALAKGRIPDAVYACGANGMLKAIDSLFPTHPHVYLSLEERMACGIGACYACVCHKKGD TTGAKSVKVCDEGPIFKASEVIL >gi|307679224|gb|GL457023.1| GENE 148 145465 - 148647 3680 1060 aa, chain - ## HITS:1 COG:SP1275 KEGG:ns NR:ns ## COG: SP1275 COG0458 # Protein_GI_number: 15901135 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Streptococcus pneumoniae TIGR4 # 1 1060 1 1058 1058 1682 80.0 0 MPKRTDIKKIMVIGSGPIIIGQAAEFDYAGTQACLALKEEGYEVVLVNSNPATIMTDKEI ADHVYIEPITLEFVSRILRKERPDALLPTLGGQTGLNMAMELSESGILDELNVELLGTKL SAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQAVAFAKRIGYPIIVRPAFTLGGTGGG MCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKEIEYEVMRDSADNAIVVCNMENFDPV GIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIRALKIEGGCNVQLALDPHSFNYYVIEVN PRVSRSSALASKATGYPIAKLAAKIAVGLTLDEMKNPVTGTTYAEFEPALDYVVSKIPRW PFDKFEKGARELGTQMKATGEVMAIGRNIEESLLKAVRSLEIGAYHNELAELSHVSDLEL TKKMVHAQDDRLFYLSEAIRRGYSIEELQSLTKIDLFFLDKLLHIIEIETTLESHVDNVA ILKEAKQNGFSDRKIAALWGQTEQAIADFRRANQIVPVYKMVDTCAAEFESHTPYFYSTY EVENESNVSKKPSVLVLGSGPIRIGQGVEFDYATVHSVKAIQAAGYEAIIMNSNPETVST DFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQTAINLAEPLTKQGVKILGTTIED LDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPSYVLGGRAMEIV ENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGIMEHIERAGVHS GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHENRVYVIEVNPRASRT VPFLSKITGIPMAQVATKAILGEKLTDLGYQDGLYPESKQVHVKAPVFSFTKLQKVDTYL GPEMKSTGEVMGSDYYLEKALYKAFEASGLHLPSYGAVLFTIADETKEEALEIAKRFSAI GYSLVATEGTADFLAKHQLPVKKVTKISNPEGETVLDVIRNGNAQVVINTMDKNRSSANQ DGFSIRREAVEHGIPLFTSLDTANAILKVLESRAFTTEAI >gi|307679224|gb|GL457023.1| GENE 149 148647 - 149726 1077 359 aa, chain - ## HITS:1 COG:SPy0833 KEGG:ns NR:ns ## COG: SPy0833 COG0505 # Protein_GI_number: 15674869 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Streptococcus pyogenes M1 GAS # 2 356 3 356 360 565 70.0 1e-161 MKRLLILEDGTVFEGKAFGAEGNVVGEVVFTTGMTGYQEAITDQSFNGQMITFTYPLVGN YGVNRDDYESIAPTCKGVIVKEHARVASNWRQQMTLDEFLKRKGIPGISGIDTRALTRKL RSAGTMKGSIIDAVDDLPHAFDQLKATVMPKNQVAQVSTTKPYPSPGIGRNVVVVDFGLK HSILRELSKRQCNLTVLPYNTTAEEILELSPDGVMLTNGPGDPKDVPEAIEMIQEIQGKV PIFGICLGHQLFSLANGADTYKMKFGHRGLNHPVREIATGRIDFTSQNHGYAVDEATIDP EKLLVTHVEVNDGTVEGVRHRDYPAFTVQYHPDAAPGPHDGLHLFDEFMELMDAWKEQN >gi|307679224|gb|GL457023.1| GENE 150 149729 - 151012 1597 427 aa, chain - ## HITS:1 COG:BH2538 KEGG:ns NR:ns ## COG: BH2538 COG0044 # Protein_GI_number: 15615101 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Bacillus halodurans # 1 425 1 424 428 480 59.0 1e-135 MKTLIKNGKIIKKENQLIEAALWLENGVIHAIGESFDEADFEQVFDAKGQLITPGLVDVH VHFREPGFTYKETIKTGSKAAARGGFTTVCAMPNLNPVPDTAEKLSEVYDLIQKDAVVKV LQYAPITEELRSEVLTNQKALKEAGAFAFTNDGVGVQTAGTMYLAMKEAAALNMALVAHT EDESLLFGGVMHEGEVSKKLGLPGILSATEASQIARDITLAKETGVHYHVCHVSTEESVR VIRDAKKAGIHVTAEVSPHHLILVDEDIPGDEGFWKMNPPLRGLADRQALIDGLLDGTID CIATDHAPHGLEEKQQSFLNAPFGIVGSETAFQLIYTNFVETGIFTLEQVIDWMAVKPAE IFGLNAGTLTIGAPADIAVFDLATAAPIDAEAFESMAVNTPFTGWTVKGKTLMTFVDGAL AWSEEAQ >gi|307679224|gb|GL457023.1| GENE 151 151021 - 151947 1045 308 aa, chain - ## HITS:1 COG:SPy0832 KEGG:ns NR:ns ## COG: SPy0832 COG0540 # Protein_GI_number: 15674868 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, catalytic chain # Organism: Streptococcus pyogenes M1 GAS # 1 307 1 307 311 424 65.0 1e-118 MIITSERISLKHLLTAEALTDREVMGLIRRAGEFKQGAKWHPEERQYFATNLFFENSTRT HKSFEVAEKKLGLEVIEFEASRSSVQKGETLYDTVLTMSAIGVDVAVIRHGKENYYDELI QSKTIQCSIINGGDGSGQHPTQCLLDLMTIYEEFGGFEGLKVAIVGDITHSRVAKSNMQL LNRLGAEIYFSGPEEWYDHQFDVYGQYVPLDEIVEKVDVMMLLRVQHERHDGKESFSKEG YHLEYGLTNERATRLQKHAIIMHPAPVNRDVELADELVESLQSRIVAQMSNGVFMRMAIL EAILHGKA >gi|307679224|gb|GL457023.1| GENE 152 151961 - 153241 1069 426 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 13 426 5 427 447 416 49 1e-115 MSEKEFRNEDAVLDIKDRPQAFHWVGLSLQHLFTMFGATVLVPILVGIDPGIALVSSGLG TMVYLITTKGKIPAYLGSSFAFIAAMQMLMKSDGYPAIAQGAMTTGLVYLIVSLIIKKIG SDWLDKILPPIVVGPVVMVIGLGLAANAANNAMYNNNVYDFKYIAVALITLGLTIFYNMF FKGFLGLIPILLGIVSGYLVALAFGIIDLTPIKEAAWFALPNFEVPFVQYQPKLYLNAIT TMAPIAFVTMTEHIGHLMVLNKLTKRNFFQDPGLSKTLMGDGLAQIVAGFVGGPPVTSYG ENIGVLAITRVHSVFVIGGAAVFAVALGFVGKLSALILSIPGPVISGISFVLFGVIAASG LKILIDNKINFDKKKNLLIASVILVIGIGGLVFKVGTFELSSMALATVLGIVLNLILPEN ARSEEQ >gi|307679224|gb|GL457023.1| GENE 153 153258 - 153794 909 178 aa, chain - ## HITS:1 COG:BH2541 KEGG:ns NR:ns ## COG: BH2541 COG2065 # Protein_GI_number: 15615104 # Func_class: F Nucleotide transport and metabolism # Function: Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase # Organism: Bacillus halodurans # 6 175 5 177 180 199 63.0 2e-51 MPKKEVVDAVTMKRALTRISYEIIERNKGIQDIVLVGIKTRGIYIAQRLAERLKQLEDID VPVGELDITLYRDDVKDMEEPELHSSDVPVSIEGKEVILVDDVLYTGRTIRAAMDAVMDL GRPRKISLAVLVDRGHRELPIRADYVGKNIPTSKTEEIIVEMEERDGADRIMISKGNE >gi|307679224|gb|GL457023.1| GENE 154 154136 - 155041 350 301 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 37 285 38 279 285 139 35 1e-31 MEQINVTIQTEKGRIDKVLSEHLPNHSRSQIQQWLKEKHVTVNGETVRANYKVTAGDEIV VTIPEPEALDMVAEDIPLTIVYEDNDVIVVNKPQGMVVHPSAGHPKGTLVNALLHHADHL SAINDVVRPGIVHRIDKDTSGLLMVAKNDQAHESLAKQLKEKTSLRKYVALVHGVIPHDK GEINAPIGRSKVDRKMQAVIEGGKEAVTHFTVLERFDAFTLVELQLETGRTHQIRVHMKY IGYPLAGDPLYGPKKTLPGNGQFLHAKLLGFTHPTTGEQLVFEAPLPEVFEKTLHQLRNN H >gi|307679224|gb|GL457023.1| GENE 155 155028 - 155504 526 158 aa, chain - ## HITS:1 COG:SP0928 KEGG:ns NR:ns ## COG: SP0928 COG0597 # Protein_GI_number: 15900808 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Streptococcus pneumoniae TIGR4 # 7 147 9 149 153 125 50.0 3e-29 MLVVYFLISALLVGLDQWSKYLTVQNISLGETKEFIPGFLSLTHLRNTGAAWSLLEGKMI FFYVITVIVSVVIIYLLIKNYKKSIWYSVGLSFVLAGAIGNFIDRVRLGYVVDMLQTDFM NFPIFNVADSTLVVGVICIFIYLILDEKAAKEGKNGTN >gi|307679224|gb|GL457023.1| GENE 156 155510 - 156214 792 234 aa, chain - ## HITS:1 COG:no KEGG:EF1724 NR:ns ## KEGG: EF1724 # Name: not_defined # Def: CBS domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 234 1 234 234 432 100.0 1e-120 MGERADTFLAHFNRIEKWMRERLNNPVNMGFSEMTRRLSRKEKGQIAQFEEDLLQMAQLR NAIVHERIADDFVIAEPNEWAVQRIETIEQALTKPEKVVPKFAKRVTAFEITTSLETLLT IIAKKQYSQFPIYEKGVFKGLITVRGIGVWFAIESTKGEVHIANRTVRELLASNYKRSNY QFVSIEATVFEVEQMFREQPRLEAVLISKSGHPNGELVGIVRPRDLASIHREKE >gi|307679224|gb|GL457023.1| GENE 157 156319 - 157989 2014 556 aa, chain - ## HITS:1 COG:SP1229 KEGG:ns NR:ns ## COG: SP1229 COG2759 # Protein_GI_number: 15901091 # Func_class: F Nucleotide transport and metabolism # Function: Formyltetrahydrofolate synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 556 1 556 556 766 69.0 0 MKTDINIAQAATLKPIQEIAETIGLSEDSLELYGKYKAKIDFPTLQSLEAQPEGKLILVT SINPTPAGEGKSTVTIGLGDALNQINKKTVIALREPSLGPVMGIKGGATGGGYAQVLPME EINLHFTGDMHAITTANNALAALLDNHLQQGNELKIDFRRVIWKRAVDLNDRALRQVVVG LGGPFQGVPREDGFDITVASEIMAILCLAQNLTELKERLSRIIVAYNDQREPVTVKDLNV AGALTLLLKDALKPNLVQTIEGTPAFVHGGPFANIAHGCNSILATKTALHLGDYVVTEAG FGGDLGGEKFLDIKVPSLGKAPDAVVIVATIRALKMHGGLAKDQLAEENLPALQKGFTNL EKHIQNMQRYDVPVVVAINEFTQDTEKEIQLLKEACQALGVPVELTSVWAQGGAGGTNLA KTVVAEIEANTKQFQPLYNPRQTIEEKIQAIVQTIYGGEQAIFSPKAQKQIADFTKNGWD QLPICMAKTQYSLSDDPQKLGRPEGFTITIRELVPKIGAGFIVALTGDILTMPGLPKVPA ALNMDVDETGQASGLF >gi|307679224|gb|GL457023.1| GENE 158 158168 - 158374 264 68 aa, chain + ## HITS:1 COG:lin1992 KEGG:ns NR:ns ## COG: lin1992 COG1278 # Protein_GI_number: 16801058 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Listeria innocua # 1 65 1 65 66 80 66.0 7e-16 MQKGIVKWFDNRKGYGFIVYNEEDEIFVHFTAIEGDGFKSLDENQSVEFEIMEGNRGLQA AHVKKIDN >gi|307679224|gb|GL457023.1| GENE 159 158479 - 158940 285 153 aa, chain - ## HITS:1 COG:no KEGG:EF1727 NR:ns ## KEGG: EF1727 # Name: ebsA # Def: EbsA protein # Organism: E.faecalis # Pathway: not_defined # 1 153 1 153 153 273 99.0 1e-72 MKKQKFYWQPELASTIIYWSCTFCILFISLILALENNGPYLISNLVMVPFFVFAYLGIAR SFNMTETSLIVRDVLWFRKKALPLSQIEKVTYNEKSIEIFSSEFKEGSKVFLMKKKTIPL FLEALKIKKPELKVAEDHSLGLHKKEEKNKSES >gi|307679224|gb|GL457023.1| GENE 160 158855 - 159019 115 54 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFLKKVCYYYNIFKFSGVDPEVVRALYEKTEILLAARISINNYLLVLHILYIIY >gi|307679224|gb|GL457023.1| GENE 161 159041 - 159448 493 135 aa, chain + ## HITS:1 COG:BS_ypdQ KEGG:ns NR:ns ## COG: BS_ypdQ COG0328 # Protein_GI_number: 16079258 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HI # Organism: Bacillus subtilis # 4 128 5 127 132 100 40.0 7e-22 MLRIYVDAATKGNPGESGGGIVYLTDQSRQQLHVPLGIVSNHEAEFKVLIEALKQAIANE DNQQTVLLHSDSKIVVQTIEKNYAKNEKYQPYLAEYQQLEKNFPLLLIKWLPESQNKAAD MLARQALQKFYSNKK >gi|307679224|gb|GL457023.1| GENE 162 159578 - 160072 661 164 aa, chain - ## HITS:1 COG:lin0783 KEGG:ns NR:ns ## COG: lin0783 COG2606 # Protein_GI_number: 16799857 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 8 161 3 156 158 161 53.0 5e-40 MAKKKTQQKTNAMRMVEQHKVPYKEYEFAWSEDHLSAESVAESLGIEKGRIFKTLVTVGN KTGPVVAVIPGNQELDLKKLAKASGNKKVEMLHLKDLETTTGYIRGGCSPIGMKKQFPTY LAEEAQQYSAIIVSAGKRGMQIELAPEAILSLTNGQFAEITTKE >gi|307679224|gb|GL457023.1| GENE 163 160090 - 160851 629 253 aa, chain - ## HITS:1 COG:lin0494 KEGG:ns NR:ns ## COG: lin0494 COG0710 # Protein_GI_number: 16799569 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate dehydratase # Organism: Listeria innocua # 1 246 1 245 252 234 50.0 1e-61 MKPVIVKNVRIGEGNPKIVVPIVAPTAEDILAEATASQTLDCDLVEWRLDYYENVADFSD VCNLSQQVMERLGQKPLLLTFRTQKEGGEMAFSEENYFALYHELVKKGALDLLDIELFAN PLAADTLIHEAKKMGIKIVLCNHDFQKTPSQEEIVARLRQMQMRQADICKIAVMPQDATD VLTLLSATNEMYTHYASVPIVTMSMGQLGMISRVTGQLFGSALTFGSAQQASAPGQLSVQ VLRNYLKTFEQNK >gi|307679224|gb|GL457023.1| GENE 164 161007 - 162791 191 594 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 355 579 12 233 318 78 27 3e-13 MEEKYQSEWSRELPMKEQLTIVQRLFRFAKPFRRMFYTAILFAFGLSIINILLPRVIQVF MDNYLTPKTATMQVILTFAAIYFFGVIVKSIVWFFQWYLYSMASLKTYQYIRVKLFEKLH TLGMRYFDQTPAGSTVSRVTNDTETLFEFWYVFLMVITGIFAVISSFFAMFQLSPEISFY CLIFLPILLVVIWYYQKFSSKLYRSMREKLSQLNTKLNEYISGMQIIQQFRQEKRLEKEF EETNDDYLKTRVAMIRMNSLLLSPIINLLYTLAIALALTMFGIDALHSPVEAGMIYAFVT YVQAFFNPMTQMMDFLSIFTDGIVAGSRILKIMDTEELTPQQSVGANGEIIRGKIEFRNV TFSYDGKNEVLKNISFVANPGETVALVGHTGSGKSSIINVLMRFYEFYEGQILIDDRDIR DFPMTELREKMGLVLQDAFMFYGDIAGNIRLLNPTITDEQIKQAAEFVQADKFIHTLPNT YHAKVIERGASYSSGQRQLISFARTIVTDPKILVLDEATANIDTETEGLIQEGLAKMRQG RTTIAIAHRLSTIRDANLILVLDKGQIVERGTHETLLAEGGLYADMYQLQSTEV >gi|307679224|gb|GL457023.1| GENE 165 162791 - 164539 200 582 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 352 557 17 226 245 81 29 3e-14 MSIFKKLGWFFKQEKKSYIIGVFSLMMVALVQLVPPKVIGVVVDEIVNKEIRLTKIIVWV ALLIGAGLAQYLFRYIWRMHIWGSAARLEKELRTQLFHHFTKMDSIFYQKYRTGDLMAHA TNDLNAIQNVAGAGILTFADSVITGGTTIIAMVLFVDWRLTLIALLPLPLLAVTSRVLGS KLHDAFRDSQAAFSAINDKTQESITGIKVIKTFGQEKEDLADFTEKIDDAIVKNKRTNFL DALFDPFITLIIGVSYVLTIIIGGRFIMEGTISLGQLVSFIAYIGMLVWPMFAIGRLFNV LERGNASYDRVNELLHEKTHIIERNAIKTMAQGTISMKIDSFSYPKEEAVALENIQFSLQ EGETLGIVGKTGAGKTTILKLLMREYDQYQGTISFGKHNIKNYTLDALMGAMGYVPQDHF LFSMTVRDNIRFAKPDLEQAAVEQAAALAFINQEIKAFPEGYDTMVGERGVSLSGGQKQR ISIARALIVEPELLILDDALSAVDAKTEEAILSNLKETRQEKTTIITAHRLSSVMHAKEI LVLDEGKIIERGTHPELLAQKGWYQRMWEKQQLEAKIEGSES >gi|307679224|gb|GL457023.1| GENE 166 164737 - 164955 367 72 aa, chain - ## HITS:1 COG:BS_yneF KEGG:ns NR:ns ## COG: BS_yneF COG3763 # Protein_GI_number: 16078854 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 3 72 2 72 72 67 64.0 9e-12 MATGWVVLIAVIALLVGAAGGFFLARKYMQDYFKKNPPVNEDMLRMMMASMGQKPSEKKV RQMMQQMKNQGK >gi|307679224|gb|GL457023.1| GENE 167 165150 - 166043 1236 297 aa, chain - ## HITS:1 COG:lin1487 KEGG:ns NR:ns ## COG: lin1487 COG0648 # Protein_GI_number: 16800555 # Func_class: L Replication, recombination and repair # Function: Endonuclease IV # Organism: Listeria innocua # 3 294 4 295 297 432 72.0 1e-121 MLLGSHVSMSGKKMLLGSAEEAASYGSTTFMIYTGAPQNTRRKPIEEMNIEAGQAFMKEH NLSNIVVHAPYIINLGNTIKTENFGFAVDFLRQEIERAQALGATQITLHPGAHVGAGPEA GIKQIVKGLNEVLWKEQIPQIALETMAGKGTEIGRTFDELAAIIDGVTLNDKLSVTLDTC HINDAGYNVKDDFDGVLVEFDKIIGLDRLKVIHVNDSKNPMGSHKDRHANIGFGTIGFEA LNGVVHHEKLTALPKILETPYVGEDKKNKKAPYGFEIAMLKNQTFDPELLEKIQGQN >gi|307679224|gb|GL457023.1| GENE 168 166054 - 166521 336 155 aa, chain - ## HITS:1 COG:no KEGG:EF1737 NR:ns ## KEGG: EF1737 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 155 1 155 155 295 98.0 3e-79 MGQSIETVTAYIETVEPKWRIAYQQVLDAVSQNLPAGFELTMQYGMPTFVVPLSVFPEGY LNRGDEPLPFISLGATKRQVALYHMGLMGNEAVRSWFQEAYQEQVSTKLNMGKSCLRFTN PKRIPYELIGELVTKITLEEWLQQYQHYQKKKKNY >gi|307679224|gb|GL457023.1| GENE 169 166521 - 167183 586 220 aa, chain - ## HITS:1 COG:no KEGG:EF1738 NR:ns ## KEGG: EF1738 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 220 1 220 220 376 99.0 1e-103 MKSIVEKLNLTKYQQLVILNRPQGEYLSEFASAAQQLPSEPVELIFAFVKTMAEFQEIVS MVIEGQHLVENGLLYVAYPKKGNKMYPTFVHRDEIFPTLQVNETDGYIKGSTLKFNRMVS LDETFTVVGMKNVLKKPAKNQTSSAVGDYVQYLPEIEALVQTEPAAAATFAALTPGYQKE WARYVFSAKRAETRKKRQTEMLVILKEGYKTKALYQQRKK >gi|307679224|gb|GL457023.1| GENE 170 167364 - 168626 727 420 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 3 419 7 415 418 284 39 2e-75 MNSAFFEELKARGLVYQVTDEEALQKQLNEESVKLYIGFDPTADSLHIGHLLPILMLRRF QQNGHVPIALVGGGTGMIGDPSFKDAERSLNTLDTVKAWSESIKGQLSRFIDFEDEKNPA ILANNYDWLGELSLIDFLRDVGKNFTINYMMSKESVKRRIETGISYTEFAYQLLQAYDFL KLYETEGCLLQLGGSDQWGNITSGIELLRREQEVQGFGLTMPLITKADGTKFGKTEGNAV WLDAEKTSPYEFYQFWINTDDRDVVKFLKYFTFLTLDEIATIEEEFTANPGQRAAQKALA KEVTTLVHGEAAYHQAVKISEALFSGDIQSLTAEEIKQGFKDVPTYEVQPEDQLSLVDLL VTSKIEPSKRQAREDVQNGAIYVNGERRQDLAAELTETDKIEGQFTVIRRGKKKYFLLKY >gi|307679224|gb|GL457023.1| GENE 171 168838 - 171216 2381 792 aa, chain + ## HITS:1 COG:SPy0097 KEGG:ns NR:ns ## COG: SPy0097 COG0744 # Protein_GI_number: 15674320 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Streptococcus pyogenes M1 GAS # 27 774 28 768 770 712 50.0 0 MKNNSSNNKQKPTTSSGGNVFLLILNVIIRVFQSLVVFGVILIVLGGSLGLGIGMGYFAF LVEDTQPPTKEELQKEISDITEVSKMTYADGTPIANIKSDLIRTRINGDQMSPLLKKAII STEDEYFEEHHGVVPKALVRALISDATGIGGSSGGSTLTQQLVKQQILTDETTFKRKANE ILLALRIEKYFSKDEIVTTYLNVSPFGRNNKGENIAGVEEAAKGLFGKSAKDLNLPQAAF IAGLPQSPIVYTPYTNTGALKDDLSLGMKRKDFVLFSMYREKAISQKEYEEAKAYDLKKD FLPTEQANVNTEGYLYYTVLDKAVEIVMDLDMKKAKVNRDDLDQVGLDQYEEQARREIQS QGYTIQSTIDQNIYNTMQTAVANYGYLLDDGTADVNGNTMIETGNILMDNATGRILGFIG GRNFDINQNNHAFNADRQVGSTIKPISVYGPAIDQGLIGSESRLANYPTTYADGREFVNS TTVDLNQFVTVRNALNWSFNIPVVHVNNELRKKMGDDNFSYNHYLSKMNYPASDAWAYES APLGPVETNVVTQTNGFQALANKGKYQKAYMIEKITDNSGHVVYEHKDEGTQVYSPATAS IMNDLLRSVVDSANTTKFKPTLAGLNPHLASADWVGKTGTTDEFKDSWLIVSTPTVTLSS WTGHDLPAPMTTTSGDNNGNYMANLANALYYANPELFGIGQKFELDPSVIKSKVSEFTGE KPGSITYNGAKFNTPGKTTTSYYAKDGAPQSTYKFGIGGTDSNYASYWGNLAPRATTNNN NNNKNNDNKKNN >gi|307679224|gb|GL457023.1| GENE 172 171402 - 172502 688 366 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229545648|ref|ZP_04434373.1| ## NR: gi|229545648|ref|ZP_04434373.1| ABC superfamily ATP binding cassette, membrane protein [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] conserved hypothetical protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis HIP11704] hypothetical protein HMPREF9514_01815 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9521_01427 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9509_02120 [Enterococcus faecalis TX0411] ABC superfamily ATP binding cassette, membrane protein [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] conserved hypothetical protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis HIP11704] hypothetical protein HMPREF9509_02120 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9521_01427 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9514_01815 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9496_01600 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9500_02138 [Enterococcus faecalis TX0017] hypothetical protein HMPREF9495_01209 [Enterococcus faecalis TX2141] # 1 366 1 366 366 633 100.0 1e-180 MLKIETIKILKEKSLWFVFIAFILMLIYPLLAQPQQLSFKEMQYENRIKNNEQAKGKMKN EPAAKETLNEIEDESEQLRKAINAIKIGDEWALLEAEKKLEESNLNAMLKGTLYSIPIIE QQKRVKELQYLSENRIKQVDSSEVAKMPALNYLGFLLSMDFPYTLLLIIPSLMIIALATL EKRKNTVSLWNGLPLKLWKKYSIKISSILFTVGLVSYLSIFLSVISAFFKNGLGNPDYPV AIIEKGQSVTIISLSNYLSRSLIMFGMLLLALTVFSFLLSLFTGNLIVHSLLIVGVVLSS GVSLISNKFFFTAYMNFPKIINGGNGYEPMDEIGLTFDFSLKMIVVYVLISLIVSAIVLR NRKGLF >gi|307679224|gb|GL457023.1| GENE 173 172495 - 173190 197 231 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 224 4 233 305 80 25 6e-14 SMKVKELTVEYGNRTIIENLSMQAEFGEIIGLVAPNGTGKTTFFKAISGLIPRKNGNISL NKIDYNSRSATYLKELFFLESSKNLYDYLTPKEHLEYIKAAWKSNSDIEHIFEQLKMKEY QNRTIKKLSLGMKQHVLLAMYLASDATILLLDEPFNGLDPTSVSLFIMCLKEIVYKDKIV ILSSHDLYNVEHTCTRILFMKNKKLVENDQRNLSLREQYDNLYLRGEERNA >gi|307679224|gb|GL457023.1| GENE 174 173377 - 174378 1312 333 aa, chain - ## HITS:1 COG:SPy0514 KEGG:ns NR:ns ## COG: SPy0514 COG1609 # Protein_GI_number: 15674618 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 6 333 7 333 333 410 67.0 1e-114 MEKQTITIYDVAREANVSMATVSRVVNGNPNVKPATRKKVLEVIDRLDYRPNAVARGLAS KKTTTVGVIIPDVSNAFFASLARGIDDVATMYKYNIILANSDGDDQKEVTVLNNLLAKQV DGIIFMGHRITDDIRGEFSRSKTPVVLAGSIDPDEQVGSVNIDYTEATKDATATLAKNGN KKIAFVSGALIDPINGQNRMKGYKEALAENGLSYNEGLVFESEYKFKAGINLAERVRNSG ATAAFVTDDELAIGLLDGMLDAGVKVPEEFEIITSNNSLLTEVSRPRLSSITQPLYDIGA VSMRLLTKLMNKEEIEEKTVVLPYGIDQKGSTK >gi|307679224|gb|GL457023.1| GENE 175 174593 - 175696 1377 367 aa, chain + ## HITS:1 COG:lin1613 KEGG:ns NR:ns ## COG: lin1613 COG0006 # Protein_GI_number: 16800681 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Listeria innocua # 3 367 2 365 365 389 52.0 1e-108 MNQEKIADLKNWMHQEKIDFTYISDPGHIAYFSGYESEPHERVLALFIAADDQSFLFTPA LEVEDAEKSSWTYPVYGYLDSENPWEKIAALLNKRTQGTPRFALEKQALSLARFDQLKTY FPASDFSHDVTPLIEKLQLIKTEPEIQRLLEAGSWADVAFEIGFKAIQAGVAEQEIVAEI EYQLKRQGIRSMSFDTLVLTGKNGASPHGVPGETKIEPHDLVLFDLGVVHNGYCSDATRT VSYLEPSDFQKEIYGIVLEAQLAATEAVKPGVTAGELDDIARGVITKAGYGEYFNHRLGH GIGTTVHEYPSLVHGNDLVIEEGMCFSIEPGIYIPGKVGVRIEDCLHVTKTGSEPFTKTT KELQIIQ >gi|307679224|gb|GL457023.1| GENE 176 175817 - 176404 1145 195 aa, chain - ## HITS:1 COG:BH3244 KEGG:ns NR:ns ## COG: BH3244 COG4980 # Protein_GI_number: 15615806 # Func_class: R General function prediction only # Function: Gas vesicle protein # Organism: Bacillus halodurans # 7 130 9 136 140 62 37.0 6e-10 MAKKGGFFLGAVIGGTAAAVAALLLAPKSGKELRDDLSNQTDDLKNKAQDYTDYAVQKGT ELTEIAKQKAGVLSDQASDLAGSVKEKTKDSLDKAQGVSGDMLDNFKKQTGDLSDQFKKA ADDAQDHAEDLGEIAEDAAEDIYIDVKDSAAAAKETVSAGVDEAKETTKDVPEKAAEAKE DVKDAAKDVKKEFKG >gi|307679224|gb|GL457023.1| GENE 177 176420 - 176851 597 143 aa, chain - ## HITS:1 COG:SPy0587 KEGG:ns NR:ns ## COG: SPy0587 COG4768 # Protein_GI_number: 15674673 # Func_class: R General function prediction only # Function: Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain # Organism: Streptococcus pyogenes M1 GAS # 6 140 6 133 135 93 48.0 1e-19 MSGGEIAALIAAVAFVVLVIFLVLVLYKVSQVVSKIEDTIDETNTTIKVVTSDVNVLSRQ VEGLLVKSNELLTDVNQKVATIDPLFTAVADLSESVSELNTSSKHLITKVGTVGKSTAKA GLVSKVGGSAFRAMRSKNKKTNN >gi|307679224|gb|GL457023.1| GENE 178 177029 - 177925 1254 298 aa, chain - ## HITS:1 COG:SP2092 KEGG:ns NR:ns ## COG: SP2092 COG1210 # Protein_GI_number: 15901907 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Streptococcus pneumoniae TIGR4 # 2 293 4 299 299 457 80.0 1e-128 MKVKKAVIPAAGLGTRFLPATKAMAKEMLPIVDKPTIQFIVEEALASGIEDILIVTGKAK RPIEDHFDSNVELENNLKEKNKTDLLKLVEETTDVNLHFIRQSHPKGLGHAVLQAKAFVG NEPFVVMLGDDLMEDKVPLTKQLMDDYEQTHASTIAVMKVPHEDTSKYGIINPEKEIEKG LYNVENFVEKPKPEEAPSDLAIIGRYLLTPEIFDVLENQKPGAGNEIQLTDAIDTLNKTQ RVFAREFKGERYDVGDKFGFMKTSIEYGLTHPEVKDNLREYIINLGAQLAKKEQPKEK >gi|307679224|gb|GL457023.1| GENE 179 177937 - 178959 1499 340 aa, chain - ## HITS:1 COG:L0016 KEGG:ns NR:ns ## COG: L0016 COG0240 # Protein_GI_number: 15673320 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Lactococcus lactis # 3 336 4 337 341 440 67.0 1e-123 MKQKVAVLGPGSWGTALAQVLAENGHEVCIWGNKPEQIDEINTKHTNKHYLPELILPTSI QATTDLATALVDVDAVLFVVPTKAIRSVAQEVAQHLKTKPIIIHASKGLEQGTHKRISEV IAEEIPAEKRQGIVVLSGPSHAEEVAVHDITTITAASENLADAVYVQELFMNDYFRIYTN DDVIGVETGAALKNIIALGAGAIHGLGFGDNAKAAIMTRGLAEISRLGVAMGANPLTFIG LSGVGDLIVTCTSVHSRNWRAGNLLGKGHKLDEVLENMGMIVEGVSTTKAAYELAQQLEV EMPITETIYNVLYNDEDVQQAAKEIMLRDGKTENEFTLDF >gi|307679224|gb|GL457023.1| GENE 180 179028 - 179864 755 278 aa, chain - ## HITS:1 COG:BS_lgt KEGG:ns NR:ns ## COG: BS_lgt COG0682 # Protein_GI_number: 16080552 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Prolipoprotein diacylglyceryltransferase # Organism: Bacillus subtilis # 6 270 8 266 269 250 50.0 3e-66 MMLAQVNSIAFRLFGIPVYWYAIIIVSGIALAVWLSSREAVRVGLKEDDVFDFMLWGLPA AIVGARLYYVAFQWQDYVDNPIEIFFTRNGGLAIYGGLIGGGLALFFFTRHRFISTWTFL DIAAPSVILAQAIGRWGNFMNHEAYGPATTRQFLENLHLPTFIIDNMNINGTYHQPTFLY ESVWNVLGFIVLVLLRKKPHFLKEGEVFLGYIIWYSFGRFFIEGLRMDSLYAFSNIRVSQ LLSLVMFVAAIVIVIVRRRNPNLKFYNREKQKKKITTS >gi|307679224|gb|GL457023.1| GENE 181 179879 - 180814 971 311 aa, chain - ## HITS:1 COG:SPy0584 KEGG:ns NR:ns ## COG: SPy0584 COG1493 # Protein_GI_number: 15674671 # Func_class: T Signal transduction mechanisms # Function: Serine kinase of the HPr protein, regulates carbohydrate metabolism # Organism: Streptococcus pyogenes M1 GAS # 1 308 1 306 310 369 61.0 1e-102 MTEVVKIYQLVENLSLEVVYGDEESLNRTIKTGEISRPGLELTGYFNYYSHDRLQLFGSK EITFAERMMPEERLLVMRRLCAKDTPAFIVSRGLEIPEELITAAKENGVSVLRSPISTSR LLGELSSYLDGRLAVRTSVHGVLVDVYGLGVLIQGDSGIGKSETALELIKRGHRLIADDR VDVYQQDELTVVGEPPKILQHLIEIRGIGIIDVMNLFGASAVRGFMQVQLVVYLEAWEKD KKYDRLGSDDAMVEIANVDVPQIRIPVKTGRNVAIIIEVAAMNFRAKTMGYDATKTFEER LTRLIEENSGE >gi|307679224|gb|GL457023.1| GENE 182 181024 - 181986 897 320 aa, chain + ## HITS:1 COG:CAC3468 KEGG:ns NR:ns ## COG: CAC3468 COG0322 # Protein_GI_number: 15896707 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Clostridium acetobutylicum # 5 138 3 139 373 131 48.0 2e-30 MKEYLKEKAHQLPLTPGVYLMKDATDTIIYVGKAKKLKNRVSSYFINSNQHSRKTMRLVK QIIDFDVLHTDTELDALLLECQLIQQYRPRYNRQMNAYEQYSYVSVAVNERQLEIKLLNI PTKENCFGPYSIRRKLNRLKIILDSIYDLVPTNYWHQTFQKESAIPTELFQQELFDFFHN QGREPIKRIAQQMQEAAEKQAFEKAAKLKEDWLFLTRFANQNQRISQANQRDWQLMWLPC QKKIKYYLIYQGLVVATRVVTKQTFQKYSPLELAKKIMPKKSPKTIEHYSKQQVDFLNIL YGYISRHPECHLENLTIEKA >gi|307679224|gb|GL457023.1| GENE 183 182022 - 182378 313 118 aa, chain - ## HITS:1 COG:no KEGG:EF1751 NR:ns ## KEGG: EF1751 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 118 1 118 118 154 100.0 9e-37 MTYFQRLVVNTLTFISLSVVFPGMIHVRGIMPAIIAAFVLSILNMLVKPVLTILSLPFTL LTFGLFSFVVNAAILQMTSFFVGEMNFGFSSFWAAVLMAVIMSIVNTIVTDHNLSKYE >gi|307679224|gb|GL457023.1| GENE 184 182378 - 182701 418 107 aa, chain - ## HITS:1 COG:MA4346 KEGG:ns NR:ns ## COG: MA4346 COG1983 # Protein_GI_number: 20093134 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Putative stress-responsive transcriptional regulator # Organism: Methanosarcina acetivorans str.C2A # 1 61 111 169 183 60 45.0 7e-10 MKRKLTKSPNNVVLTGSLAGIADWLGIDPTIIRVVYVLLSFFSAGFPGILLYIALAVLIP SGRTGSDRGYGHQNPYNRNVRNENPYAANKKQRKEAEKIDDDEWSDF >gi|307679224|gb|GL457023.1| GENE 185 182776 - 184377 2279 533 aa, chain - ## HITS:1 COG:lin2630 KEGG:ns NR:ns ## COG: lin2630 COG3595 # Protein_GI_number: 16801692 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 213 530 107 414 416 179 32.0 9e-45 MKERERVLELVKKGILTSEEALILLENMATEKDEKQIEKAAEKVDTQNIGTTNKEDQVAD LMDALEKGESEGPTVDPFEENTQDSAEKDRENLERILDELATKANRASAELDEVNAEIAG IKEEIKEVVEEIGTLDTKEELDALTEDEQVQRKDLHVLLAQLEEKLATQSTEKTALEEEL KNIRKEQWKGQWNDTKEKVSSQFSEEWKDQATDTFNQVGGKVAEVGGQVGEFLKKTFNSF SDTMNDNVEWKDIKMKVPGVATTKFEHEFNYPNPQASLIDVKVANGTVVFKTWDQEDVKV EAKIKLYGKMAGDSPMEAFLERSDIDVDDETISFQVPNKRVKADLTFYLPKRTYDHVSVK LLNGNVLVEELTAKDVYTKSTNGTITFKKIDATMLEIEGVNGEIKVLEGTILDNIIETVN GDVSISAAPESLSVSLINGDIRITAKEKTLRRVEASSANGNIKLALPNDLGVEGQVKTNL GSINSRLTDIEVVREKKDRGNQQLHFRRVLEESMAQINASTTTGSIFLKDTDK >gi|307679224|gb|GL457023.1| GENE 186 184587 - 185264 862 225 aa, chain - ## HITS:1 COG:SP1395 KEGG:ns NR:ns ## COG: SP1395 COG0704 # Protein_GI_number: 15901249 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate uptake regulator # Organism: Streptococcus pneumoniae TIGR4 # 1 217 1 217 217 234 57.0 9e-62 MLRTQFEEELLNLHNQFYEMGMMVSSAVHKSVKAYINHDKKLAQEVIDRDIEINDMEVKL EKKSFEMIALQQPVTTDLRMIITVMKASSDLERMADHAVSIAKSTIRLKGETRIPEIEKE ISDMSDYVKKMVDNVLIAYVKTDQKDARMIAQMDDRTNEYFDSIYKHAVEAMKANPETVI SGTDYLHVAQYLERIGDYVTNICEWIVYLATGKITELNSNRDEQF >gi|307679224|gb|GL457023.1| GENE 187 185279 - 186055 284 258 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 1 254 1 263 329 114 27 5e-24 MVRRSKMGKEIISSKDLHLYYGKKEALKGIDLTFNQGELTAMIGPSGCGKSTYLRCLNRM NDLIPDVTITGSVVYKGKDIYGPKTDNVELRKEIGMVFQQPNPFPFSVYENVIYGLRLKG VKDKQVLDEAVETSLKAAAVWEDVKDKLHKSALSLSGGQQQRVCIARVLAVEPDIILLDE PTSALDPVSSGKIENMLLTLKEKYTMIMVTHNMSQASRISDKTAFFLQGDLIEFNDTKKV FLNPKEKQTEDYISGKFG >gi|307679224|gb|GL457023.1| GENE 188 186048 - 186857 306 269 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 26 256 5 231 245 122 34 1e-26 MKEYNLNDTHLLQLDSQKDPIALHTEDLHVFYGDNEAIKGVDLQFEKNKITALIGPSGCG KSTYLRSLNRMNDGIANSRVTGKIMYKDVDVNTKEVDVYEMRKRIGMVFQRPNPFSKSIY ENITFALKQHGEKDKKKLDEIVETSLKQAALWDQVKDNLNKSALALSGGQQQRLCIARAI AMKPDILLLDEPASALDPISTGTVEETLVNLKDDYTIIIVTHNMQQAARISDYTAFFYMG KVIEYDHTRKIFTRPKIQATEDYVSGHFG >gi|307679224|gb|GL457023.1| GENE 189 186874 - 187758 1001 294 aa, chain - ## HITS:1 COG:SPy1243 KEGG:ns NR:ns ## COG: SPy1243 COG0581 # Protein_GI_number: 15675203 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 1 294 1 294 295 407 72.0 1e-113 MNAKKADKIATGILYAVSGVIVLILAALLIYILARGIPHISWEFLTQPSRAYQVGGGIGI QLFNSLYLLLITMIISIPISLGAGIYLSEYAKKNWLTDLIRTSIEILSSLPSVVVGLFGF LIFVVQIGYGFSILSGALALTFFNLPLLTRNVEESLKAIHYTQREAGLALGLSRWETVKK VILPEALPGILTGVILSSGRIFGEAAALIYTAGQSAPALDFSNWNPLSVSSPISIFRQAE TLAVHIWKINTEGTMPDGAAVSAGASAVLILVVLLFNFGARFIGNRLYKRMTSA >gi|307679224|gb|GL457023.1| GENE 190 187758 - 188678 1043 306 aa, chain - ## HITS:1 COG:SPy1244 KEGG:ns NR:ns ## COG: SPy1244 COG0573 # Protein_GI_number: 15675204 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 2 301 4 303 311 376 74.0 1e-104 MEDVQKKLLTKSKRAKMEQRGKFISFLCIALIVAVVVSIFYFVASKGLATFFKDKINVFD FLFGTNWNPSDIGADGKPMVGALPMIAGSFIVTFLSAIVATPFAIGAAVFMTEISPKKGA KFLQPVIELLVGIPSVVYGFIGLSVIVPFVRSIFGGTGFGILAGTFVLFVMILPTVTTMT VDALKAVPRHYREASLALGATRWQTIYKVVLRAAVPGILTAVVFGMARAFGEALAIQMVI GNAAVMPTSLTTPASTLTSILTMGIGNTIMGTVENNVLWSLALILLLMSLLFNIVIRIIG KRGALK >gi|307679224|gb|GL457023.1| GENE 191 188801 - 189655 1137 284 aa, chain - ## HITS:1 COG:SP1400 KEGG:ns NR:ns ## COG: SP1400 COG0226 # Protein_GI_number: 15901254 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 1 282 1 285 292 322 56.0 6e-88 MKKRLLLFIGLASILTLTGCAKWIDRGESITAVGSSALQPLVETASEEYQSQNPGRFINV QGGGSGTGLSQVQSGAVDIGNSDLFAEEKKGIKAEDLIDHKVAVVGITPIVNKNVGVKDI SMENLKKIFLGEVTNWKELGGKDQKIVILNRAAGSGTRATFEKWVLGDKTAIRAQEQDSS GMVRSIVSDTPGAISYTAFSYVTDEVATLSIDGVQPTDENVMNNKWIIWSYEHMYTRKNP SDLTKEFLDFMLSDDIQERVIGQLGYIPVSKMEIERDWQGNVIK >gi|307679224|gb|GL457023.1| GENE 192 189831 - 190715 967 294 aa, chain - ## HITS:1 COG:L2 KEGG:ns NR:ns ## COG: L2 COG2177 # Protein_GI_number: 15672955 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division protein # Organism: Lactococcus lactis # 1 294 1 311 311 310 50.0 2e-84 MIRTFFSHLFESIKSLKRNGWMTVASASAVTITLVLVGIFMGVIFNATKLADDIEKNVTV SVFVDIGTKQNEMKTLEKQLKGLDNVEDISYSNKDQQLKKIQEQMGDAWNLFEGDSNPLY DVYYVRAKTPEDTKDIAKQAAKFPSVFKADYGGVNSDKIFKIAQTVRTWGLAAAALLLFV AVFLISNTIRITILSRQKEIQIMRLVGAKNSFIRWPFFLEGAWIGLIGAIVPVIIMTLGY HQVYNMFNPQLLRSNYSLIRPEDFIWKVNLLMIATGMIIGSLGSVISMRRFLKI >gi|307679224|gb|GL457023.1| GENE 193 190708 - 191394 357 228 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 215 4 219 223 142 36 2e-32 MIEMKDVMKKYSNGTTAIRNISVEIDQGEFVYVVGPSGAGKSTFIRLMYREEKATKGNLT VAGHDLMKIKNKEVPYLRREIGIVFQDYKLLPKKTVYENVAYAMQVIGRRPREIKKRVME VLDLVGLKHKVRVFPSELSGGEQQRVSIARAIVNTPKVLIADEPTGNLDPENSWEIMKLL DRINAQGTTVVMATHNSTIVNTIRHRVIAIENGRITRDQVEGEYGYDD >gi|307679224|gb|GL457023.1| GENE 194 191500 - 192483 1087 327 aa, chain - ## HITS:1 COG:lin2653 KEGG:ns NR:ns ## COG: lin2653 COG1186 # Protein_GI_number: 16801714 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Listeria innocua # 1 326 1 326 327 454 71.0 1e-127 MGEPGFWDNTETAQKLINETNSLKEKYQQFHQLSEELDELTVMFELQQEEYDAEIQEELE ERIHLLQERLTTYELSLLLNEPYDHNNALIELHPGAGGTESQDWGSMLLRMYTRWAESHG FQVETLDYQAGDEAGIKSVTLLIKGYNAYGYLKSEKGVHRLVRISPFDSAKRRHTSFCSV DVMPELDDTIEIAINPDDLKIDTYRASGAGGQHINKTESAVRITHIPTGTVVASQAQRSQ LKNREQAMSMLKAKLYQLEMEKKAQEAASLRGEQMEIGWGSQIRSYVFHPYSMVKDHRTN YETGNVQAVMDGDLDGFIDAYLKQRLS >gi|307679224|gb|GL457023.1| GENE 195 192527 - 192601 77 24 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MENPEIRTLLDEMTQKITSFRRSL >gi|307679224|gb|GL457023.1| GENE 196 192678 - 195215 3156 845 aa, chain - ## HITS:1 COG:SPy1805 KEGG:ns NR:ns ## COG: SPy1805 COG0653 # Protein_GI_number: 15675639 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Streptococcus pyogenes M1 GAS # 1 845 1 837 839 1102 68.0 0 MANFLKKMIENDKKELRRLEKIADKIDAHASAMEQLSDEQLREKTDEFKARYQKGETLDE LLPEAFAVVREAAKRVLGLFPYRVQLMGGIVLHDGNIPEMRTGEGKTLTATMPVYLNALS GEGVHVVTVNEYLATRDSNEMGELYNFLGLSVGLNINSKSSDEKREAYNCDITYSTNNEL GFDYLRDNMVVYRSQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKSTALYTRADNF VKRLKEDEDYKIDIQSKTIGLTEAGIEKAEQTFGLDNLYDIENTALTHHLDQALRANYIM LLDIDYVVQDNKVLIVDQFTGRIMDGRRYSDGLHQAIEAKEGVEIEDETKTMATITFQNY FRMYKKLAGMTGTAKTEEEEFREIYNIQVIQIPTNRPIIRDDRPDLLYPTLESKFNAVVE DIKERYHKGQPVLVGTVAVETSELLSDKLNAAKIPHEVLNAKNHFKEAEIIMNAGQKGAV TIATNMAGRGTDIKLGLGVLELGGLAVIGTERHESRRIDNQLRGRAGRQGDPGVSQFYLS LEDDLMKRFGSERIKTFLERMNVQEEDAVIQSKMFTRQVESAQKRVEGNNYDTRKNVLQY DDVMREQREVIYAQRQEVIMEENDLSDVLMGMVKRTIGRVVDSHTQLEKEEWNLDGIVDF AASTLVHEDTISKKDLENKSAEEIKDYLVARAQEVFEEKSQQLNGQEQLLEFEKVVILRV VDTKWTDHIDAMDQLRQSVGLRAYGQNNPLVEYQTEGYSMYNNMVGSIEYEVTRLFMKSE IRQNVQREQVAQGQAEHPETEQDAAAQSNTSAKRQPVRVDKKVGRNDLCPCGSGKKFKNC HGRNA >gi|307679224|gb|GL457023.1| GENE 197 195471 - 196022 669 183 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116333275|ref|YP_794802.1| ribosome-associated protein Y (PSrp-1) [Lactobacillus brevis ATCC 367] # 1 183 1 183 186 262 69 1e-68 MFRYNVRGENIEVTEAIRDYVEKKVGKLERYFSDSPEATVHVNLKVYTEKTAKVEVTIPL PYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTKINRKSRETGRNNTKAAVFLVGEETE ETPSELDIVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDAETNGTSIVYRRKDGKYGLI ETD >gi|307679224|gb|GL457023.1| GENE 198 196161 - 196796 343 211 aa, chain - ## HITS:1 COG:L0319 KEGG:ns NR:ns ## COG: L0319 COG1040 # Protein_GI_number: 15673071 # Func_class: R General function prediction only # Function: Predicted amidophosphoribosyltransferases # Organism: Lactococcus lactis # 13 211 30 216 216 128 38.0 9e-30 MLLRFKKWARPSLCQHCQAKFQKLPMTGTCFGCSRVSQERYCFDCQRWQLLYPEYSFHNA ALFHYDEGMQEWMERYKFQGDYRLRTCFNEEINSYFRQQSADYIIPVPLSEKRMQERGFN QVIGLLEAADVPYSPFLIRKEENVPQSKKTRKERMRLQQPFAIQKENQKKLKNCSVILVD DIYTTGRTLFHAAAVINDCYPKSLNTFTLAR >gi|307679224|gb|GL457023.1| GENE 199 196837 - 198153 611 438 aa, chain - ## HITS:1 COG:lin2657 KEGG:ns NR:ns ## COG: lin2657 COG4098 # Protein_GI_number: 16801718 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) # Organism: Listeria innocua # 58 436 57 438 439 317 43.0 3e-86 MEDLHGRKIIIEETERSIQTKLVYLPTMLERSPLTIQCQRCGEVVSKKENRLATNVYYCH ACIQLGRVTSCQKFCHLPERPNSPRTVFFEWSGQLTKGQQAISVELCETAKARENRLVWA VTGAGKTEMLFAVLHQTLQEGGRIALASPRVDVCLELFPRIQAVFPHEAIALLHGNSQEA YRYTKLVICTTHQLLKFHQAFDLLIVDEVDSFPFVNNEHLYYGVRNARKKRSSLVYLTAT PTKELRKLLQQKKLAASILPARYHRRPLPVPRRFWVQSWQRLSSKNIKIIAHHLKRLLVR NSVLLFCPSISLIHQLHALIAQRFSDKEVVAVYGSDELRLEKVQAMRQQKTDILITTTIL ERGVTFDAVSVIVYGANHRVFTSSTLVQIAGRVDRRQEFNYGEVLFLHDGETRDMKEAIR QIKQMNRLASKRGMLDGL >gi|307679224|gb|GL457023.1| GENE 200 198168 - 198245 70 25 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFFRESSKKQLVFFFRKKAREMRIL >gi|307679224|gb|GL457023.1| GENE 201 198253 - 198588 470 111 aa, chain - ## HITS:1 COG:lin2831 KEGG:ns NR:ns ## COG: lin2831 COG1440 # Protein_GI_number: 16801891 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIB # Organism: Listeria innocua # 4 104 2 100 101 115 64.0 1e-26 MSKKTIMLVCSAGMSTSLLVTKMQKAAFNQGLDAHIFAASASEADTNLENNPVDVLLLGP QVRYMKSDFEKRLSPKGIPTDVISMSDYGLMNGEKVLEQALDLLAQADKKE >gi|307679224|gb|GL457023.1| GENE 202 198709 - 198996 325 95 aa, chain - ## HITS:1 COG:no KEGG:EF1770 NR:ns ## KEGG: EF1770 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 95 1 95 95 177 100.0 1e-43 MVHTRQKKYDTITHYLKTNGGSQVTLTFTQFDELLFPHSGLPKTAKTDVDWWANDYKHPE KGAYGWLNASYQVVQVNLEKEYVVFNKLLKSAWYV >gi|307679224|gb|GL457023.1| GENE 203 199066 - 199800 603 244 aa, chain + ## HITS:1 COG:L98095 KEGG:ns NR:ns ## COG: L98095 COG1739 # Protein_GI_number: 15673073 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 30 234 3 207 209 219 52.0 5e-57 MREKVAIQLILFYTDFITREKDAHMLESYITVKQDGFSEIEIKKSRFICSVKRVTSEEEA KAFIAAIKKEHWKANHNCSAFVIGEKNDIQRSSDDGEPSGTAGVPMLEVLKKKELINVVA VVTRYFCGIKLGTGGLIRAYSHALSHTLDEIGLVIGKLQQELLITIAYPLLGKAQAFLEH SPYTLKETIYTESIQLICLVDEQATETFIAEMTDLLNGQLTIEKGATSYHELPFNEKGAQ ANDI >gi|307679224|gb|GL457023.1| GENE 204 199790 - 200023 443 77 aa, chain + ## HITS:1 COG:no KEGG:EF1772 NR:ns ## KEGG: EF1772 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 77 1 77 77 148 100.0 7e-35 MTFEEVLPQIKAGKKAVRKGWSGFELFIELRDEIGTSEGEFLQVTPYFLIKTSDEGYSMF SPTPCDVLAEDWVIVEA >gi|307679224|gb|GL457023.1| GENE 205 200107 - 200871 246 254 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 8 249 4 238 242 99 30 1e-19 MPKEFETKRVLVTGAASGIGQAQAIAFAEQGAEVIGIDLDETGLKQTAALVNPDSTKPFT YFVGDVSSPSFVQATMKQIVKDNGQIDILLNTAGILDDYRPSLETSEALWDQILATNLKS VFLVTNALLPYFLQQKKGVIVNMASIAGLVAGGGGAAYTASKHAIIGYTKQLSYDYAKLG IRANAIAPGAIQTPMNAADFAGEGEMATWVASETPAGRWAQPQEVAKLSLFLASDDADYI HGTVMTIDGGWTMK >gi|307679224|gb|GL457023.1| GENE 206 201017 - 201538 369 173 aa, chain + ## HITS:1 COG:lin0860 KEGG:ns NR:ns ## COG: lin0860 COG4708 # Protein_GI_number: 16799934 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 21 172 10 162 162 94 39.0 8e-20 MNHSSNPQTSTWSATALAKMALVTALYVVVTVLLAPLSFGPIQLRLAELFNYLGVFNKRY IWSITLGVAIANAASPLGIIDIVIGSAGTCAVLWIAYFATKNQQNLLIKLMLTAILFALS MFTVAGPLTFFYQLPFWYTWLTVGLGELLSMTVGGILIYVLNKKIQLVKRIEE >gi|307679224|gb|GL457023.1| GENE 207 201575 - 202309 410 244 aa, chain - ## HITS:1 COG:no KEGG:EF1775 NR:ns ## KEGG: EF1775 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 244 1 244 244 465 97.0 1e-130 MRKLILVFVGCAMAFCLWPNQAAAVAGGYGGGRVESPSGGNPSNGFSPGGDGSRSYVHHN ETGTSNTTPLEGLISTVFFVLFGGVMIWQRRRRNQPVDEGAFQEMWAVLPGTSKEKKALL KEIQQTFLEIQQAWDQENLSVVKDNYTEKLYQKHLAVLQANQQAGIRNHVKKVKVAPASN YHHISETSFSLMLHFSCIDYEEDIQSGLVLSGYKHQKQYFSQLWYFDYNPSLGKWQADFI QPKG >gi|307679224|gb|GL457023.1| GENE 208 202330 - 202659 301 109 aa, chain - ## HITS:1 COG:no KEGG:EF1776 NR:ns ## KEGG: EF1776 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 109 1 109 109 181 93.0 8e-45 MRNKQIEKVSQRLFIVTSVLAVSLLLLSALVYPDLPAHVPIHVNFWGKGNSFGPRSSIFM WPVVLFGLSIYQRSYQSVQPYGRWLKVFLIIVNLGALFSILRLFIHLLV >gi|307679224|gb|GL457023.1| GENE 209 202787 - 204034 1431 415 aa, chain - ## HITS:1 COG:BH0634 KEGG:ns NR:ns ## COG: BH0634 COG0151 # Protein_GI_number: 15613197 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylamine-glycine ligase # Organism: Bacillus halodurans # 1 414 1 417 428 435 56.0 1e-122 MNILVIGRGGREHAIAKKLQQEDKVKTVYCAPGNPGMSGDNIRTVPISEEQQTELIQFAK DNQIDWTFVGPETPLIEGIVDAFQAAGLLIFGPTKAAAIIEGSKSFAKDFMQKYQIPTAE YRVFRRLAPALEYIEKQGVPIVIKADGLAAGKGVVVAETKAAAKRALVAMMEDQQFGASG QTVVIEEFLQGEEFSLMAFVSNEKVYPMVIAQDHKRIFDGDAGPNTGGMGAYTPVPQIPE EAVQQAISQVLKPTAKGMVAEKRPFQGILYAGLIQTETGPKVIEFNARFGDPETQVVLAR LESPLSEIISSLLAKEQPTIAWNELASVGVVVAAEGYPNQYKTNLPLPEMSGETIHYAGV TRSEQALVSAGGRIFLAEATASTLEEARKKVYQTLDNYSFPGMYYRKDIGVKGLI >gi|307679224|gb|GL457023.1| GENE 210 204053 - 205594 1563 513 aa, chain - ## HITS:1 COG:SP0050 KEGG:ns NR:ns ## COG: SP0050 COG0138 # Protein_GI_number: 15899995 # Func_class: F Nucleotide transport and metabolism # Function: AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) # Organism: Streptococcus pneumoniae TIGR4 # 1 513 1 515 515 649 64.0 0 MTKRALISVSDKTGVTTFAAGLVANGFEIISTGGTRTVLEEAGVPTLAIDDITGFPEMLD GRVKTLHPNIHGGLLAKRGNQTHQKALTEQGIQFIDLVVVNLYPFKETILKPAISEAEAI EMIDIGGPSMLRSAAKNYQDVTAVVDPSDYEQVLSEISSTGTSQLATRKRLAAKVFRHTA AYDALIADYLTTQVGETEPEKQTLTYERKQTLRYGENSHQQATFYQSVVPVSLSIASARQ LHGKELSYNNIRDADAALRIASEFTEPTVVAVKHMNPCGIGTGKTILAAYRQAFEADPVS IFGGIVVLNRPVDQATAAEMHQIFLEIIIAPSFEEEALALLSQKKNLRLLTLDFHAQEKK AVELVSVMGGLLIQEQDTVVENDQAWQVVTERQPTPAERDALNFAWKAVKHVKSNAIVLA NESQTVGIGAGQMNRIGSVKIAVDQAQAAGKLQGAVLASDAFFPMADSVEYAAQHGIQAI IQPGGSIKDQASIDLANHYGIAMIFTGTRHFKH >gi|307679224|gb|GL457023.1| GENE 211 205591 - 206163 299 190 aa, chain - ## HITS:1 COG:BS_purN KEGG:ns NR:ns ## COG: BS_purN COG0299 # Protein_GI_number: 16077719 # Func_class: F Nucleotide transport and metabolism # Function: Folate-dependent phosphoribosylglycinamide formyltransferase PurN # Organism: Bacillus subtilis # 2 185 3 186 195 211 50.0 5e-55 MKIAVFASGNGSNFEAIAAAFSQKKIAGQLSLVFCDQPEAYVLTRAQKRKIPVVCFSPSD FSSREQYEEQVLKHLKEHQIDLIVLAGYLRIIGKTLLEAYPKRIVNIHPSLLPSFPGLHG IEEAFHYGVKITGITIHYVDSGVDTGPIIFQTTTKIDTEDTLDTLTEKIHALEHEWYPKI ISQIVKETMK >gi|307679224|gb|GL457023.1| GENE 212 206160 - 207191 761 343 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149378138|ref|ZP_01895857.1| Ribosomal protein S7 [Marinobacter algicola DG893] # 5 320 10 320 354 297 48 3e-79 MENAYSKAGVNVEAGYEVVERIQKHSQKTQRTGTLGMLGGFGGCFDLSSYKLKEPVLVSG TDGVGTKLLLAIEEQRHETIGIDCVAMCVNDVVAQGAEPLYFLDYLALGTVNPAKVEAIV AGVAAGCCEANAALIGGETAEMPDMYEADAYDVAGFAVGIAEKSQLLTPSNVKEGDFLIG LPSSGLHSNGYSLVRNIFFKKHSFKTTDKLPELAPKTLGEELLTPTKIYVKELLPLLKAG LVHGAAHITGGGFLENLPRMFSSALAAEIQLNSWPVLPIFKLIQKYGEIPPEEMYEIFNM GLGMILAVSPEHVEKVQELLPEAFEIGRLVPRKTKAVIFKEAL >gi|307679224|gb|GL457023.1| GENE 213 207193 - 208632 1425 479 aa, chain - ## HITS:1 COG:SPy0026 KEGG:ns NR:ns ## COG: SPy0026 COG0034 # Protein_GI_number: 15674270 # Func_class: F Nucleotide transport and metabolism # Function: Glutamine phosphoribosylpyrophosphate amidotransferase # Organism: Streptococcus pyogenes M1 GAS # 1 476 1 476 484 704 70.0 0 MSYEAKSLNEECGIFGIWGHPDAAQVTYFGLHSLQHRGQEGAGIVANNSGKLDGHRDLGL LAEVFQKQEQLNALEGTAAIGHVRYATAGTGSVDNIQPFLFKFYDSQIGLAHNGNLTNAK RLRKQLEREGAIFHSNSDTEILMHLIRKSTAVSFLDKLKESLNLVKGGFAYLLLTETMMI AALDPNGFRPLSIGQMNNGAYVVASETCALETVGARFIQDVAPGEVVIISDEGLKIEVFT TEVQPAICAMEYIYFARPDSNIAGVNVHTARKRMGKNLAIESPVAADMVIGVPNSSLSAA SGYAEEAQIPYELGLVKNQYVARTFIQPTQELREQGVRMKLSAVRGVVKGKKVVLVDDSI VRGTTIRRIIHLLKEAEAQEVHVRIASPPLKYPCFYGIDIQTRDELIAANYSIEEIKEQI GADSLAFLSEAGLIDGIQLNYDAPYSGLCMAYFNGDYPTPLYDYEEQYQASLKKETRRN >gi|307679224|gb|GL457023.1| GENE 214 208608 - 210827 2244 739 aa, chain - ## HITS:1 COG:L173921 KEGG:ns NR:ns ## COG: L173921 COG0046 # Protein_GI_number: 15673512 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain # Organism: Lactococcus lactis # 1 736 1 739 739 1024 68.0 0 MMNEPTPKEIKETRLYAEWGLTDEEYHQIETILQREPNYTETGLFSVMWSEHCSYKNSKP VLKKFPTEGPQVLQGPGEGAGIVDIGDGLAVVFKAESHNHPSAVEPYEGAATGVGGIIRD IFSMGARPIALLDSLRFGELTDARTRYLFQEVVAGISGYGNCIGIPTVGGEIAFEPCYQG NPLVNAMCVGLIRHDEIQKGQAKGVGNSILYVGAKTGRDGIHGATFASEEFSEGEEQQRS AVQVGDPFMEKLLLEACLDLIKNHQDILIGIQDMGAAGLVSSSAEMASKAGSGLILELDK VPQRETQMSPYEMLLSESQERMLICVEKGAEQQACELFQTYNLEAVAIGSVTDDGQYRVF HGGKIVADVPVDALAEEAPVYQKAYQEPERMRAFKKLAPFIPEITNSTELLKRLLQQPTI ASKKSVYETYDSQVQTNTVVQPGSDAAVLRVRGTNKALAMTTDCNSRYLYLNPEIGGQIA VAEAARNIVASGAQPLAITDCLNYGSPDKPESFWELWTSADGIAAACRQLGTPVISGNVS LYNETDGQAIYPTPMIGMVGVIEDVSQITTQAFKQVDDLIYLIGETHPDFNGSEIQKMQL GRIEGLLRSFDLKEEKANQELVLKAIQAGLVASAHDCAEGGVAVALAESAFANELGLQVT LPLTKEYLFAETQSRFILSVSPQHQEAFETLIGRKAQHIGKVTETGLVIHALDDVINCST KEAKALWEDAIPCLMKQKA >gi|307679224|gb|GL457023.1| GENE 215 210824 - 211498 598 224 aa, chain - ## HITS:1 COG:L176360 KEGG:ns NR:ns ## COG: L176360 COG0047 # Protein_GI_number: 15673513 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain # Organism: Lactococcus lactis # 1 218 1 220 223 302 66.0 4e-82 MKLAVIVFPGSNCDADLLWAVKEVMGVDAEFVRHDATSLAKFDGVLLPGGFSYGDYLRCG AIARFSPIINEVIRFAAEGKMVFGTCNGFQILTEIGLLPGTLLRNDSLRFICKSVPLKVN THTKFTSEYPENVSIHLPVAHGEGNYYCDEKTLKELKEKNQIVFTYQEKVNGSLANIAGI CNEQGNVLGMMPHPERAMEELLGSTDGRSFFASIIKNFGKELSQ >gi|307679224|gb|GL457023.1| GENE 216 211499 - 211750 348 83 aa, chain - ## HITS:1 COG:BH0627 KEGG:ns NR:ns ## COG: BH0627 COG1828 # Protein_GI_number: 15613190 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component # Organism: Bacillus halodurans # 1 77 1 78 84 79 53.0 2e-15 MYFVKVYVTYKESILDPQGEAVKEAVHRLGFTEVAEIRVGKYFEMHVQQTEAIEEKIEQI CDQLLANVNMESYRFEILSLEEI >gi|307679224|gb|GL457023.1| GENE 217 211764 - 212477 604 237 aa, chain - ## HITS:1 COG:BS_purC KEGG:ns NR:ns ## COG: BS_purC COG0152 # Protein_GI_number: 16077713 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase # Organism: Bacillus subtilis # 3 233 5 235 241 263 57.0 3e-70 MEKKALVYTGKAKKLYQTENAAVLFVEYLDQATALNGQKKDKVLGKGALNNQITSLIFEH LQQQKIPNHFIKKVSEHEQLIQAVEMIPLEVVVRNYAAGSFSKRLAIEEGTKLVTPIIEF YYKEDRLDDPFINEDHIQFLKVATPDEIVEIKALALQINQALSQLFQRLNICLIDFKIEI GRTKANQLLLADEISPDTCRLWDLNTNEHLDKDVYRRELGEIVPVYEEVLQRLLTAN >gi|307679224|gb|GL457023.1| GENE 218 212629 - 213753 848 374 aa, chain - ## HITS:1 COG:lin1886 KEGG:ns NR:ns ## COG: lin1886 COG0026 # Protein_GI_number: 16800952 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) # Organism: Listeria innocua # 18 371 19 373 374 373 50.0 1e-103 MNKPLKVGATIGIIGGGQLGRMLVMSGKKMGFQMIVLDPTLNSPAGQVADRQIVAAFDQI SALTELAELCDVITYEFENIEVASLEKAIPLEKLPQGTGLLKITQNRLLEKMFLQSIGCK IASFAEVKSQKELPQATEKIGFPCVLKTIQGGYDGKGQVVLKCEEDFSQATELLANATCE LEKWVPFTKELSIIVAGNKHGYQSFPVSENIHRKNILHESIVPARISENVQQKAAELAQH IAEELNLSGVLAIELFLTDSEELYVNELAPRPHNSGHYSIEACSFSQFDAHIRGISNWGI GLPQLLQPVVMVNLLGEHLEKSYQLCTSKPTWQVHYYGKAGSKVGRKMGHVTITTPCLSE TLKEIETVGIWNVT >gi|307679224|gb|GL457023.1| GENE 219 213746 - 214234 527 162 aa, chain - ## HITS:1 COG:BS_purE KEGG:ns NR:ns ## COG: BS_purE COG0041 # Protein_GI_number: 16077710 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase # Organism: Bacillus subtilis # 1 161 1 161 162 218 69.0 4e-57 MKPLVAVIMGSTSDWATMKATCLVLEELGIPYEKRVISAHRTPDLMFRFAEESRTKGLKV IIAGAGGAAHLPGMVAAKTTLPVIGVPVKTRTLNGIDSLLSIVQMPGGVPVATTAIGSAG ATNAGLLAAEILSIDDLQLAERIQARRQSLEKAVMESGEQLE >gi|307679224|gb|GL457023.1| GENE 220 214408 - 215223 1015 271 aa, chain - ## HITS:1 COG:Cgl2775 KEGG:ns NR:ns ## COG: Cgl2775 COG0330 # Protein_GI_number: 19554025 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Corynebacterium glutamicum # 52 269 106 323 325 216 47.0 4e-56 MEEKKTFYMSGYVGIASLLVILIAGIGLFIYGASHTNGVLVVLGIILLVGAILFLGRYLG TIKENGLFITIPFTQKMNISLKVRNFNSSLLKVNDSDGNPIEISAVIVFRVVDTAKALFN VDYYQDFVEIQSETAIRHVATQYPYDTFSDNDVTLRGNTEQISEELTKELQERLAVAGVE VIETRLNHLAYATEIASSMLQRQQAKAILAARQTIVEGAVSMTQMALEQIEEGQEINFTD ERKVQLINNLLVSIITDKGTQPVINTGDVSS >gi|307679224|gb|GL457023.1| GENE 221 215372 - 216247 326 291 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90022317|ref|YP_528144.1| ribosomal protein S15 [Saccharophagus degradans 2-40] # 13 248 239 475 500 130 34 7e-29 MRYLSKDILEEVITQRPSDSYKSNFGRVVLIGGNRQYGGAIIMSTEACINSGAGLTTVIT DVKNHGPLHVRCPEAMVVGFEETVLLTDVVEQAEVILIGPGLGLDATAQQILKMVLAQHQ KQQWLIIDGSAITLFSQGNFSLTYPEKVVFTPHQMEWQRLSHLPIEQQTLVNNQRQQAKL GSTIVLKSHRTTIFHAGEPFQNTGGNPGMATGGTGDTLAGIIAGFLAQFKPTIETIAGAV YLHSLIGDDLAKTDYVVLPTKISQALPTYMKKYAQPHTAPDSELLEQKRSR >gi|307679224|gb|GL457023.1| GENE 222 216345 - 217985 1673 546 aa, chain - ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 1 545 1 549 549 476 46.0 1e-134 MKKYLKIIMVCILLVGFLAGCTNKNENKKKQKNTKEAVQLMSPSELTTLNTSVLLDFPDA IVQTAAFEGLYSLDEQDQLVPAVAKALPMISEDGKTYTISLRKEAVWSNDDPVTAHDFEY AWKKMIDPKNGFVYSFLIVETIQNGAEISAGKLAPNELGVTAVDDYTLKVTLKEPKPYFT SLLAFPTFFPQNQKVVEQFGADYGTASDKVVYNGPFVVKDWQQTKMDWQLAKNNRYWDHQ NVRSDIINYTVIKETSTALNLFEDGQLDVATLSGELAQQNKNNTLYHSYPTATMNYLRLN QKRKGQTTPLANENLRKALALGIDKENLVNNIIADGSKALHGAITEGFVANPTTGLDFRQ EAGNLMVYNKEKAQSYWKKAQAELGEKVNVELMVTDDGSYKKIGESLQGSLQELFPGLTI ELTALPTEAALNFGRESDYDLFLIYWTPDYQDPISTLMTLYKGNDRNYQNPVYDKLLDEA ATTYALEPEKRWATLIAAEKEVIETTAGMIPLSQNEQTVLQNDKVKGLNFHTFGAPLTLK NVYKEK >gi|307679224|gb|GL457023.1| GENE 223 218048 - 218368 438 106 aa, chain - ## HITS:1 COG:no KEGG:EF1792 NR:ns ## KEGG: EF1792 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 27 106 1 80 80 147 97.0 1e-34 MLIKSAESEEMTIFFDKENQPNAQVQMGIITLQPGEKRPLAGYARHEQDEYSYVISGEAH TILEDGQDLVGKAGQAQLIEAGEGHINYNDGLEQAVVVWMLVERTK >gi|307679224|gb|GL457023.1| GENE 224 218504 - 219523 1023 339 aa, chain - ## HITS:1 COG:lin0977 KEGG:ns NR:ns ## COG: lin0977 COG0115 # Protein_GI_number: 16800046 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase # Organism: Listeria innocua # 5 338 4 337 339 536 74.0 1e-152 MEKANLDWNNLGFSYIKTPFRYISYWRDGKWEEGTLTDNNQLTISESSPALHYGQQCFEG LKAYQCADGSVNLFRPDENAKRLQKSCARLLMPQVPVETFVSACQEVVKANLAYLPPYGT GGTLYLRPYMIGVGDNIGVAPAKEYIFSIFCVPVGSYFKNGLAPTNFIVSEYDRAAGRGT GAAKVGGNYAASLLPGAEAHEKEFSDCIYLDPYTHTKIEEVGAANFFGITKEGTFITPKS ASILPSITKYSLLTLAKERLGMTALEGDVYIDRLADFSEAGACGTAAIISPIGGIQNGTD FHVFYSETEVGPVTKQLYDELVGIQFGDKEAPEGWIVKA >gi|307679224|gb|GL457023.1| GENE 225 219714 - 220166 715 150 aa, chain - ## HITS:1 COG:BS_ydaT KEGG:ns NR:ns ## COG: BS_ydaT COG4876 # Protein_GI_number: 16077505 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 143 1 143 150 95 40.0 2e-20 MPWNMNDYPTSMKNLAPLIRKKAIDIGNALLADGYPDDRAIPIAISQAEKWYQEASAADK KAFEQEANPTKQDSHKQDKHAGKLLTAAVNVKYKDDQWLVISDSAEKASNTFTHKQEAIE RAQEIARNKQTKLKIYKQDGTLQETKEYTE >gi|307679224|gb|GL457023.1| GENE 226 220387 - 220956 731 189 aa, chain + ## HITS:1 COG:no KEGG:EF1796 NR:ns ## KEGG: EF1796 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 189 15 203 203 281 98.0 9e-75 MKMSKVLTTILTATAALVLLSACSSDKKTDSSSSSKETANSSTEVVSGASISAKPEELEM ALSDKGNWIVAATDNVTFDNEVTVAGTFHDKGKDSNDVYRKLALYSQDDNKKVTAEYEIT VPKLIVSSENFNIVHGTVKGDIEVKANGFTLNGTKVNGNITFDKQEYKDSADLEKDGATV TGEVTVANN >gi|307679224|gb|GL457023.1| GENE 227 221003 - 221647 592 214 aa, chain - ## HITS:1 COG:no KEGG:EF1797 NR:ns ## KEGG: EF1797 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 214 1 214 214 397 99.0 1e-109 MQLLKKYGGYFLVLGVLLDFFTPYYVGFKDQGYNQLTEVISLLGDVNSPVRENFNRLTII AGMLMLASLPRIYAIFSRKTKKGAWLVVAMIGAYGLFDCIFSGLFSVDTSTAGTVAAALH NGGSAVGYTGFLLLSGVLTIIYSKYGSQKNKNLFGFLFILCMLAAGLYGLARIPQLQQVK PFNYLGLWQRVSSFCNYLPMLALCLQTKTNDKFD >gi|307679224|gb|GL457023.1| GENE 228 221768 - 222922 970 384 aa, chain - ## HITS:1 COG:lin0908 KEGG:ns NR:ns ## COG: lin0908 COG0628 # Protein_GI_number: 16799980 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Listeria innocua # 78 365 69 350 378 96 27.0 6e-20 MKKYNVDWNYWVVRFLFVMALIVGYLLITNYQHFVHSVSGLLGILSPFITGFVIAYLLSG SQKKIEGLLERVPLPVVKKAKHGLSVLLLYLIILFIFVLTLNYIVPLLISNLVDLANSLP TFYDHMVQFVMSLEDKGILKTAAIEKYLNSVLKDLSPERFLNQWTQALFSLGTLTKNVSS FFLNAFLTLIISIYALVFKQSILTFVEKAAHKLLSEKVYKQTQTWLNTTNKIFYKFISCQ FLDACIIGVSSTILLSILNVKFAVTLGILLGICNMIPYFGSIFASIVAGVITLFTGGVTQ AITVLLVLLILQQIDGNIIGPRIMGDALNVNPILIIVSITIGGAYFGVLGMFLAVPVAAI IKIIVSEWLNESKENDKIVDSIES >gi|307679224|gb|GL457023.1| GENE 229 223460 - 227434 4491 1324 aa, chain - ## HITS:1 COG:no KEGG:EF1800 NR:ns ## KEGG: EF1800 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 1324 1 1324 1324 2488 99.0 0 MKHGKIKRFSTLTLLASATILVPLSTSAEETTNSSTETSSSMVEPTATEEKLWQSDFPGG KIGEWQDVIGKTNRELAGESLAISRDAAAGNNAVSLNLDSPKLADGEVETKFKYTAGSGR TGVIIRGNTKDSWVFVGYNANGKWLVESPNSWNDSISGPTLNEDTNYLLKVRYVGEKITI WLNTTLIYEGEPVLANGDKIPTEAGHVGVRLWYDKKIVNYDYFKNGPVDSIPEIVPEVTQ IAPVKVFTKIGVAPKLPKQVKVTYNTGKEANEAVSWNEIDPDAYKEPGTFEVDGTLENTN IKAKASIVVAKDNEAEKGDKISSADLTAVVDPQFPRIIRYEDPQSNQVIFNGQHEKIDQV MIDGKAYKATAEKQKSEANQAVYNVAVPEIGLHFTTTLTVSEGQELAMKLSDIREEGTKI HTISIPNQGLISVNSTDEGATFAGVVMNTGTNANNGNKNGDTIQDLTTTSQEETKKYMYG FLNTANYAASFWTNAYGDGSVDGSDNNRIHKQTKETATGFVTTLSSGAWTYRPFDAPEDY TTGETPEVKVKFSKDSNDDNRVDWQDAAIGFRSIMNNPMGAEKVPELVNQRIPFNFASQA TNPFLVTLDESKRIYNLTDGLGQMNLLKGYQNEGHDSAHPDYGAIGQRPGGEQALNQLID EGHKLNAVFGVHINDTESYPEAKGFNEELVDPTKRGWDWLDPSYFIKQRPDALSGRRYER FKELKQKAPNLDYIYVDVWGNQGESGWASRQLSKEINSLGWFTTNEFPNALEYDSVWNHW SAEKDYGGTTTKGFNSTIVRFIRNHQKDTWIISDNPLLGGAEFEAYEGWVGKTNFNTYRQ KTFAINVPTKFLQHYQITNWETTTAADGQIYGTIKLANGAEKVTVTQADANSPRSITLNE TEVLKGDAYLLPWNVNGQDKLYHWNPKGGTSTWSLDKKMQGKTNLHLYELTDQGRIDKGA IATTNNQVTIQAEANTPYVIAEPDSIEPMTFGTGTPFKDPGFNEANTLKNNWKVFRGDGE VKKDANGDYVFSSEKERTEIKQDINLPKPGKYSLYLNTETHDRKATVTVKIGGKKYTRTV NNSVAQNYIQADINHTSRKNPQYMQNIRIDFEIPDNAKKGSVTLAVDKGNSVTKFDDLRI VERQTDIMNPDKQTVIKQDFEDTQAVGLYPFVKGSAGGVEDPRIHLSERNEPYTQYGWNG NLVSDVLEGNWSLKAHKQGAGLMLQTIPQNIKFEPNKKYTVQFDYQTDGENVFTAGTING ELKNNNDFKPVGELTSTAADGQTKHYEAEIIGDASGNTTFGIFTTGADKDFIMDNFMVTV ESKK >gi|307679224|gb|GL457023.1| GENE 230 227584 - 227991 528 135 aa, chain - ## HITS:1 COG:SP0064 KEGG:ns NR:ns ## COG: SP0064 COG2893 # Protein_GI_number: 15900009 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Streptococcus pneumoniae TIGR4 # 1 135 1 134 134 167 62.0 4e-42 MSEHLVLVSHGRFCEELKKSAEMIIGPQETISTVTLLPEEGEADFLEKFEAITESLEDFV VFADLLGGTPCNILSKKIMQGASFDLYTGMNLPMVISYVNASLLAIEGDYVKESAESIVK VNELLLNVAVDDEDE >gi|307679224|gb|GL457023.1| GENE 231 228011 - 228820 1005 269 aa, chain - ## HITS:1 COG:SP0063 KEGG:ns NR:ns ## COG: SP0063 COG3716 # Protein_GI_number: 15900008 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Streptococcus pneumoniae TIGR4 # 1 265 1 265 271 351 64.0 1e-96 MTKSNYKLTKEDFKQINRRSLFTFQLGWNYERMQGSGYLYTILPQLRKIYGDDTPELKEV MKTHTQFFNTSNFFNTIITGIDLAIEEKEGIAGKQTVSGLKTGLMGPFAAIGDSIFAALI PTIFGALAANMAINGNPTGIFIWIVAQIAVMVFRWKQLEFAYREGISLVTTMQHRLTALT DAATLLGVFMVGALVATMVNVKLSWAPSIGDVTLNMQNNLDMILPRLLPAGIVGGVYWML GKKNMTSTKAIFIVLIVCVALSALGVISK >gi|307679224|gb|GL457023.1| GENE 232 228807 - 229706 1239 299 aa, chain - ## HITS:1 COG:SP0062 KEGG:ns NR:ns ## COG: SP0062 COG3715 # Protein_GI_number: 15900007 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Streptococcus pneumoniae TIGR4 # 3 298 2 300 301 288 52.0 9e-78 MNILWWQILLLTLYAGYQILDELQIYSSLSAPVFAGLFAGLVMGDIKAGLIIGGSMQLTV LGVGTFGGASKIDANSGTILATAFSVSLGMNPEQAIAAIAVPVASLMIQLDILARFANTY FAHRIDKMVEDMNYKGIERNFLMGALPWSLSRMIPVFLALAFGGGLVQKVVSVLNGDLKW LGDGLSVAGAVLPAVGFAILLRYLPVKKHFPYLILGFTVTALLGTIFTNMQLLGTSVASV VKDFSGVFNALPMLAVALIGFALAAISYKNGQMIPSGPAAKKEHAANDSDEGEIEDDEI >gi|307679224|gb|GL457023.1| GENE 233 229720 - 230199 546 159 aa, chain - ## HITS:1 COG:SP0061 KEGG:ns NR:ns ## COG: SP0061 COG3444 # Protein_GI_number: 15900006 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Streptococcus pneumoniae TIGR4 # 1 157 1 157 158 224 75.0 7e-59 MSIIGVRIDGRLIHGQVANLWATKLNISRIMVVDDEVAGNAIEKSGLKLATPAGVKLSVL PVEKAAQNILAGKYDSQRLLIVVRKPDRLLKLVELGVPIKEINVGNMSQTNETRSITKSI NVVDQDIDVFKELNAKGVHLIAQMVPSDKAEDFMSLITK >gi|307679224|gb|GL457023.1| GENE 234 230196 - 231980 1792 594 aa, chain - ## HITS:1 COG:SP0060 KEGG:ns NR:ns ## COG: SP0060 COG1874 # Protein_GI_number: 15900005 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase # Organism: Streptococcus pneumoniae TIGR4 # 1 590 1 591 595 842 67.0 0 MDRFEIKEEFLLNGQPFKILSGAIHYFRVDPSDWHHSLYNLKALGFNTVETYVPWNLHEP QKGTFHFEGILDLERFLKLAQELGLYAIVRPSPYICAEWEFGGFPAWLLNEPGRMRSNNP TYLKHVAEYYDVLMEKIVPHQLANGGNILMIQIENEYGSFGEEKAYLRAIRDLMIARGVT APFFTSDGPWRATLRAGSMIEDDILVTGNFGSKAKENFGMMQAFFEEHGKKWPLMCMEFW DGWFNRWKEPIIKRDPQELAESVREALALGSINLYMFHGGTNFGFMNGCSARGTIDLPQI TSYDYDAPLDEQGNPTEKYFALQKMLHEEYPALPQAEPLVKDSFAQTAIPLTNKVSLFAT LETISQPVVSVYPQTMEQLGQNTGYLLYRTSIEKDAAEEKLRVIDGRDRLQLFVNQVHQA TQYQTEIGEDIYVTLPQENNQIDVLIENMGRVNYGHKLFADTQKKGIRTGVMADLHFMTQ WQQYCLPMTSCEQVDYSREWQPDQPSFYQYHMELAEVKDTFIDVSKFGKGIVFVNQTNLG RFWNVGPTLSLYIPKGLLKEGQNEIVIFETEGTYRPEIQLVKEPLYKEMKEGLQ >gi|307679224|gb|GL457023.1| GENE 235 232043 - 232984 928 313 aa, chain - ## HITS:1 COG:SA1995 KEGG:ns NR:ns ## COG: SA1995 COG1105 # Protein_GI_number: 15927773 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Staphylococcus aureus N315 # 1 311 1 310 310 303 50.0 3e-82 MIVTVTMNPSIDISYLLDHLKLDTVNRTSQVTKTPGGKGLNVTRVIHDLGGDVIATGVLG GFHGAFIANELKKANIPQAFTSIKEETRDSIAILHEGNQTEILEAGPTVSPEEISNFLEN FDQLIKQAEIVTISGSLAKGLPSNFYQELVQKAHAQEVKVLLDTSGDSLRQVLQGPWKPY LIKPNLEELEGLLEQDFSENPLAAVQTALTKPMFAGIEWIVVSLGKDGAIAKHHDQFYRV KIPTIQAKNPVGSGDATIAGLAYGLAKDAPAAELLKWGMAAGMANAQERTTGHVDVENVK KHLMNIQVVEIAK >gi|307679224|gb|GL457023.1| GENE 236 233000 - 234031 1273 343 aa, chain - ## HITS:1 COG:SA1994 KEGG:ns NR:ns ## COG: SA1994 COG3684 # Protein_GI_number: 15927772 # Func_class: G Carbohydrate transport and metabolism # Function: Tagatose-1,6-bisphosphate aldolase # Organism: Staphylococcus aureus N315 # 20 337 7 325 326 402 63.0 1e-112 MTINNTTFGGGTMLTLTAGKKAAMDRLSTQEGIISALAIDQRGALKKMIKALDVEPTDAQ IETFKELVSKELTPYASAILLDPEYGLPAAKARDTEAGLLLAYEKTGYDATTPGRLPDLL ADWSVLRLKEEGADAIKFLLYYDVDEDSEINHQKHVFIERLGSECAEEDLPFYLELVSYD AQIADATSLEYAKVKPHKVNEMMKEFSKPQYKVDVLKVEVPVNMNFVEGFAPAETAYTKE EAANYFLEQSQATDLPFIFLSAGVSTELFQETLRFAKEAGSTFNGVLCGRATWKNGVKPF VEAGETAACDWLKTEGRENIESLNEVIAATASSWHAKVQVNEG >gi|307679224|gb|GL457023.1| GENE 237 234018 - 235190 1403 390 aa, chain - ## HITS:1 COG:SPy0716 KEGG:ns NR:ns ## COG: SPy0716 COG2222 # Protein_GI_number: 15674774 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted phosphosugar isomerases # Organism: Streptococcus pyogenes M1 GAS # 1 389 1 389 399 443 56.0 1e-124 MFTAEKEELEQLGAEITTREIRQQPELWQETVTLYHENQTALENFLKEVQAKAQGKRTRV IFTGAGTSQYVGDTVVPYLRAHGDTQAFSFESIGTTDIVAKPEDYLIKDEPTLLVSFARS GNSPESLAAVEVANQVVETIHHLAITCAEEGQLAQISQKEENSFLFLMPTRSNDGGFAMT GSFSCMTLGTLLLFDQTAFEQKQDYVTALIKLGEEVLSREEELNEIVNLDFERIVYVGSG SLAGLTREAQLKILELTAGKVATIFDSSMGFRHGPKSFINEKTIMFGFVNNTPYTRDYDL DILEEVHGDEIAAGVFAIAQPGKRNFSGSTIEYSAETALLPDGYLALADIMVAQTVALLT SIKVGNKPDTPSPTGTVNRVVKGVTIYDYK >gi|307679224|gb|GL457023.1| GENE 238 235202 - 235933 698 243 aa, chain - ## HITS:1 COG:SPy0715 KEGG:ns NR:ns ## COG: SPy0715 COG2188 # Protein_GI_number: 15674773 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 6 242 3 239 240 229 52.0 4e-60 MENAFKNKALYHQLVDLLQERIETCMIPHDKLPSERELTAQYGVSRTTVRLALQELENRG SIYRRHGKGTFVSDIKKEAADLAGAYSFTEQMKGLGRKPHTRILSFEKLEADKFICQHLN LSLGEAVFKLSRLRIADNEPLMVEDTYLPVKFFLSLTDQLLRSKPLYDLFSEDFKQTVRL ADEELYASIASKEDAKLLMIPEGAPVLHLARQTYNMKNEIIEFTLSVARADQFHYQIRHI RNS >gi|307679224|gb|GL457023.1| GENE 239 236255 - 236386 98 43 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315036698|gb|EFT48630.1| ## NR: gi|315036698|gb|EFT48630.1| hypothetical protein HMPREF9501_00532 [Enterococcus faecalis TX0027] # 1 43 48 90 90 70 90.0 5e-11 MSTHSINIYLIRKLAEGLNMLNNEYFHGFRKISYLLVVAKTKQ >gi|307679224|gb|GL457023.1| GENE 240 236319 - 237221 837 300 aa, chain - ## HITS:1 COG:BS_gspA KEGG:ns NR:ns ## COG: BS_gspA COG1442 # Protein_GI_number: 16080894 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Bacillus subtilis # 1 291 1 275 286 235 41.0 1e-61 MENRKELAIVSCCNTNFVPHLAAMFVSILENSPSAAAVHFYVIDDNINFESKQLLYFTIK HTQINAELTFLKINPHFFKNVVTSERIPKTAYYRIAIPELFRGSQIERLLYMDCDMIALD DVAKLWTVDLGENIIAAVEDAGFHQRLEKMAIPAESMCYFNSGLLLIDVKKWLNLDVTTK VLRFIEENPDKLRFHDQDALNAVLHDRWTLLHPKWNAQGYILSKAKKHPTIYGEKQYEET RRAPSIIHFTGHVKPWTKEFQWYTKRYYDQYANRTAFRCVNTFNQYLSYTKISRRIEYAQ >gi|307679224|gb|GL457023.1| GENE 241 237211 - 238056 801 281 aa, chain - ## HITS:1 COG:BS_gspA KEGG:ns NR:ns ## COG: BS_gspA COG1442 # Protein_GI_number: 16080894 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Bacillus subtilis # 1 272 1 271 286 216 41.0 5e-56 MRKNQKIVPIVTASDENYAPYLNVMMTTVLENCHSERSVHFYVIDDGLSLSSKKALQETV SSNSQNATVEFLTADKEVYQNFLVSDHITTTAYLRISLPSLLQKYSYKKVLYLDADTLVL DDIVQLYDTPLVNQTIGAVIDPGQAYALKRLGIHSSDYYFNSGVMIIDIDRWNEKAITQK TIQYLEENGDRIVYHDQDALNAVLYEDWLALEPRWNMQTSLVFNRHEAPNEAYQKLYTAG NQEPAIIHFTGHDKPWNTLENHPYSALYLNKLKKVGARNGK >gi|307679224|gb|GL457023.1| GENE 242 238361 - 238630 75 89 aa, chain - ## HITS:1 COG:no KEGG:EF1812 NR:ns ## KEGG: EF1812 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 11 89 1 79 79 122 92.0 5e-27 MHNQPACLVKMAIKRQSKIIRLRHRSFKKDNFWKGKRIIYEVKEVRTESFIFEAIGSVST IYQVLSLGQKSKVIFVPGFFALLLSKKSV >gi|307679224|gb|GL457023.1| GENE 243 238557 - 240617 1561 686 aa, chain - ## HITS:1 COG:lin0927 KEGG:ns NR:ns ## COG: lin0927 COG1368 # Protein_GI_number: 16799998 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Listeria innocua # 4 647 12 643 653 548 45.0 1e-155 MKKINNRLGLFLFFVLLFWAKTILAYYLDFSLGVKGSLQREILWFNPVATTLLLFGFSLY FKKHKTFMLSLTLLNVLNTLILYLNIIFYREFTDFITIQSVFGFSKVSEGISGDLLALMR VHDVFYWLDTLVLLVLVFYSFKQRRNHQVFVTKPINRRLAISISCLSVLLFSVNLFLSET DRPQLLQRIFDRNYIVKYLGLDAFTAIDGVKTAMSNEVRAEASSNELPEIMKFTKQNNLP LNPQYAGIAKGKNVFVIHLESFQQFLINMKVQGQEVTPFLNQLYQNKATISFDNFFHEVG QGKTSDAENMLETGTFGLPQGSLFTQLGSDNTFEAAPAVLGQKGYTTAVFHGNVGSFWNR DHVYKNLGYQYFFDRSYFSKDDKMLGYGILDKQLLRESASELEHLQQPFYAKFLTVTNHT PYYTDDQNFPFPKLNTGNSIVDDYVRTAHYLDQSLEQFFHYLQTTSLYNHSIFVIYGDHF GISDANNKDLCKAFNRDPKTWTNYDNAQLQRVPLMFYMPGYTQGKIMHEYGGEIDVLPTL YHLLGVDDKNYIHFGTDLLSPQYKQVVPFRNGDFVTPRFSYLGGEIYNNQGKKLDQVPAD LKAEVTKDNDWVKKSLSLSDKLNQENLLRFYKPQGFQEVQPKDYNYDVAFEKNKVLEVEK QKNAQSTSLFSQNGNQTTVQNYPTTP >gi|307679224|gb|GL457023.1| GENE 244 240659 - 242047 1162 462 aa, chain - ## HITS:1 COG:mll2542 KEGG:ns NR:ns ## COG: mll2542 COG0477 # Protein_GI_number: 13472297 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Mesorhizobium loti # 14 421 14 421 505 211 32.0 3e-54 MIDRKKVILYTCCMSLFVVTMDVTVVNVALPSIQSDFHTNLSTLQWVTDGYTLMVASLLL LSGSTADRIGRKRVLQLGLACFGLASFLCGISQTPGQLIAFRMLQGIGGSMLNPVAMSII TQVFTEKLERAKAIGLWGSVTGISLGMGPIIGGLIVSYFSWRYVFFVNVPIIAAAIILTQ KFVPESKVEKTAKNDFVGQALMILFLFSSIYSIIGLPRKGLFAPDILSTGIIGCLAIVIF FIYEYNIDNPLINPRFFLSIPFTSASFLAIFGFIIYNGYLFLNTLYLQEMRGFSPLEAGL STIPLAFVSFLVAPRAGEMVGRIGTKRPIMLCGISMLAVSFLQLFVTKTTPMIILFIIYI FLGIGFGMLNSPITITAIEGMPLSQSGTAAAIAVTCKQIGNSLGVALPSLLITKPITSSL TRTPFTNVWLLFGCCAIAIIFLSYLSNSPLAKKSLRRVRFYF >gi|307679224|gb|GL457023.1| GENE 245 242429 - 243283 720 284 aa, chain - ## HITS:1 COG:BS_yclA KEGG:ns NR:ns ## COG: BS_yclA COG0583 # Protein_GI_number: 16077430 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 1 227 1 238 290 72 27.0 9e-13 MTIEKLEYFYTIAKYNSISKAASELHVSKSTLSASLKDLESELGHLLFDRNGNSLTLNSY GDKIVQSVYIILNEAKKMKLNLHEMIENPVMRLGFGNTSLMYKVTENEDQLNRFWECYHG SSFELLNKLENHELDFVITSADVNSPVLKKEQLIELKMYLCVSREIKQEIEEEGFTCLTN YPFLFLPHHLDHLEATKSVLEMLQLTSPIVCCYDTLMLTRLIEKSKGVYAVISLRKEQLQ EIDSKLFFLPIERKQKFYLYRNVSSSVFVQPGQIKATLQKLLET >gi|307679224|gb|GL457023.1| GENE 246 243675 - 244505 602 276 aa, chain + ## HITS:1 COG:PH1607 KEGG:ns NR:ns ## COG: PH1607 COG1235 # Protein_GI_number: 14591382 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Pyrococcus horikoshii # 1 272 1 245 249 63 26.0 4e-10 MKINYLGTGAAERIPGIFCNCKLCKYAREKKGREIRTQTQLIIDDVLLIDFPGDSYLHLL QYDLCFADFDSLLISHWHSDHFYGEDLAYRMSGYALDIPNRLTVYGNEAVKTFYQRAFDL EGRQDDTRLQYQVIQPYKCFTIANYTIYPLPAQHGNFSEDCFIFVIDDGKDAFLSTHDTG YFTSEMFEYLEKSHLLLSIVSLDCTSQTNETGNSHMNWEENLKLIAELKERKLVTDKTIY VANHFSHNGGLSYAEMAALSQKHEIITSYDGLEILT >gi|307679224|gb|GL457023.1| GENE 247 244653 - 245507 909 284 aa, chain - ## HITS:1 COG:SA0901 KEGG:ns NR:ns ## COG: SA0901 COG3591 # Protein_GI_number: 15926635 # Func_class: E Amino acid transport and metabolism # Function: V8-like Glu-specific endopeptidase # Organism: Staphylococcus aureus N315 # 43 272 64 280 342 77 27.0 2e-14 MKKFSIRKISAGFLFLILVTLIAGFSLSANAEEYIVPAESHSRQKRSLLDPEDRKQEVAD TTEAPFASIGRIISPASKPGYISLGTGFVVGTNTIVTNNHVAESFKNAKVLNPNAKDDAW FYPGRDGSATPFGKFKVIDVAFSPNADIAVVTVGKQNDRPDGPELGEILTPFVLKKFESS DTHVTISGYPGEKNHTQWSHENDLFTSNFTDLENPLLFYDIDTTGGQSGSPIYNAQFEVV GVHSNGGIKQTGNHGQRLNEVNYNFIVNRVNEEENKRLSAVPAA >gi|307679224|gb|GL457023.1| GENE 248 245556 - 247088 1584 510 aa, chain - ## HITS:1 COG:BS_nprE KEGG:ns NR:ns ## COG: BS_nprE COG3227 # Protein_GI_number: 16078534 # Func_class: E Amino acid transport and metabolism # Function: Zinc metalloprotease (elastase) # Organism: Bacillus subtilis # 57 491 75 521 521 178 31.0 3e-44 MMKGNKILYILGTGIFVGSSCLFSSLFVAAEEQVYSESEVSTVLSKLEKEAISEAAAEQY TVVDRKEDAWGMKHLKLEKQTEGVTVDSDNVIIHLDKNGAVTSVTGNPVDQVVKIQSVDA IGEEGVKKIIASDNLENKDLVFLAIDKRVNNEGQLFYKVRVTSSPTGDPVSLVYKVNATD GTIMEKQDLTEHVGSEVTLKNSFQVTFNVPVEKSNTGIALHGTDNTGVYHAVVDGKNNYS IIQAPSLATLNQNAVDAYTHGKFVKTYYEDHFQRHSIDDRGMPILSVVDEQHPDAYDNAF WDGKAMRYGETSTPTGKTYASSLDVVGHEMTHGVTEHTAGLEYLGQSGALNESYSDLMGY IISGASNPEIGADTQSVDRKTGIRNLQTPSKHGQPETMAQYDDRARYKGTPYYDQGGVHY NSGIINRIGYTIIQNLGIEKAQTIFYSSLVNYLTPKAQFSDARDAMLAAAKVQYGDEAAS VVSAAFNSAGIGAKEDIQVNQPSESVLVNE >gi|307679224|gb|GL457023.1| GENE 249 247323 - 248393 773 356 aa, chain - ## HITS:1 COG:SP0527 KEGG:ns NR:ns ## COG: SP0527 COG2972 # Protein_GI_number: 15900441 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Streptococcus pneumoniae TIGR4 # 95 332 187 430 446 91 28.0 3e-18 MVSFINYTEQTILSVFFQQIYQNKLLWIASNVILLLINIWIALKIPNSVFLRLNRVLENS RIFFGCLLLLLILLLLFVFLISPEISPDFMRGFVTVNSSKLELLISVGLFLILIGLVIEA YLEEQRINTQLLNNLTIYTEKIESINEELAMFRHDYKNLLYSLQIAISYEDILEIKRIYE ETIAPTKKIIDNEEFELMKLNRLKNMELKALISMKINTAKQAKLKVIVDVPEVFILDTSI DLVVVIRLLAILLDNAIENSAKSELKMFAISIFNKNETQEFVITNSVQAEFDFRVMKKTK FSSKSNPEEHGWGLLYVKEIVDFSDQFDLQTSFNEGSVTQHLIIEKNHNSKKVVNE >gi|307679224|gb|GL457023.1| GENE 250 248323 - 248844 465 173 aa, chain - ## HITS:1 COG:L132126 KEGG:ns NR:ns ## COG: L132126 COG1713 # Protein_GI_number: 15673861 # Func_class: H Coenzyme transport and metabolism # Function: Predicted HD superfamily hydrolase involved in NAD metabolism # Organism: Lactococcus lactis # 5 145 10 150 197 130 45.0 8e-31 MDHQQVLKNEIKQYLVSKNCEKTYYHCMEVGEYAYQLGEKYLTSPEKVSIAGYLHDISAI YPNNQRISVAQKYGIELNEAEMAFPMIIHQKISKSIAKMDFGIEDNEILSAIECHTTLKK NYSDIDLVLFVADKIKWDQEGKPPYLFYIAYGFVYQLHGANDFKCFFSTDLSK >gi|307679224|gb|GL457023.1| GENE 251 249068 - 249973 583 301 aa, chain + ## HITS:1 COG:CAC0090 KEGG:ns NR:ns ## COG: CAC0090 COG0726 # Protein_GI_number: 15893386 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Clostridium acetobutylicum # 1 300 1 292 293 149 33.0 8e-36 MRHKKRKFKINGYVLFSALILIVLVFIQTFLLTQPKITSKNDDTTQTSTKNSTAKKDSPT KLEKESTHMTISSKKYAYSADKIRKYITGEEPYKGEKLVFLTFDDGVNNQITPQILDALK KYNVHATFFLVGNTLTSENQKIVKREVAEGHSIGFHSSTHDYATLYPNGIVNTEEIQAEI ATMENSLKKILGETFQTTLWRYPGGHMSWGGTEKSDELFKQLGIHWIDWNAMVGDAEPLD RQPTTVAEMLAFHQHSLEVYPDYNIRVVLMHDSVDKELTKQALPQLIEFYQANGYQFGVL Y >gi|307679224|gb|GL457023.1| GENE 252 250147 - 250563 436 138 aa, chain - ## HITS:1 COG:no KEGG:EF1844 NR:ns ## KEGG: EF1844 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 138 1 138 138 213 100.0 3e-54 MKKIGYFSCIIFFMFLVGCSNNKKENGNLLNASSFPLILTTIIEKEEDLTKGSIFFNKDK TMTLEKEYLVNPNNEDTKKTSRTEKKVYKNIKIQENKESYEIIGQLDKKTKKIEFKKVDE GKRISDAEGNVYGDFGGK >gi|307679224|gb|GL457023.1| GENE 253 250579 - 250662 141 27 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEATLPMVQARRKELSILMNNSYSNFM >gi|307679224|gb|GL457023.1| GENE 254 250828 - 250995 120 55 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229545567|ref|ZP_04434292.1| ## NR: gi|229545567|ref|ZP_04434292.1| hypothetical protein HMPREF0349_0784 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis HIP11704] hypothetical protein HMPREF9514_01730 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9521_01345 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9515_00144 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9509_02036 [Enterococcus faecalis TX0411] hypothetical protein HMPREF0349_0784 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis HIP11704] hypothetical protein HMPREF9509_02036 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9515_00144 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9521_01345 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9514_01730 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9496_01517 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9500_02053 [Enterococcus faecalis TX0017] hypothetical protein HMPREF9495_01291 [Enterococcus faecalis TX2141] # 1 55 1 55 55 84 100.0 3e-15 MFAIVLRVVILLITVKIVDYFANTPEVQIQRKLPEFEKVSPYDPRDNSFLIQIIL >gi|307679224|gb|GL457023.1| GENE 255 251721 - 252899 896 392 aa, chain - ## HITS:1 COG:SA1835 KEGG:ns NR:ns ## COG: SA1835 COG0582 # Protein_GI_number: 15927603 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Staphylococcus aureus N315 # 27 390 30 381 390 110 28.0 6e-24 MENMSRFKKHITATGKITWYFQAFRTTRRGFNSKREAQLAYLEMEKQHRNKQKRLASNDK FSVVSQKWFEYYRSLNEQKVATYDKREEQVKILNRWIGGKKLSSLSSEELQKFLFILKEK GIDGVNVGYAKNSLQSLVQVLNMVFNYCKKKNLINENPMKFVKMPKYQLSLKDLKESVNS LEDKFLTVDELRAFLNYGIVYEELPMSVLFHVLFYTGCRVSEALALQPQDIDFERNEILF YKQTAVKGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRNSNFVVDETYL FVYLDPGKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMASLVAEYCSWDVLKDH LGHTDSTTSKIYRHLTSTEKLKPLTAFNSLEG >gi|307679224|gb|GL457023.1| GENE 256 253002 - 253313 139 103 aa, chain - ## HITS:1 COG:no KEGG:EF1848 NR:ns ## KEGG: EF1848 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 12 103 12 103 103 177 100.0 2e-43 MSKNNNKSNSSELEKYLFHPEKIEDSNNKMKRINQLPLVLTNKDLKEQFQISDSTLNRLI KLGDFPSCWFGIRGHYLRDDILEWVKKGNEEYFCDQFRLLRLL >gi|307679224|gb|GL457023.1| GENE 257 253662 - 253907 106 81 aa, chain - ## HITS:1 COG:no KEGG:EF1849 NR:ns ## KEGG: EF1849 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 81 1 81 81 145 100.0 4e-34 MVDKQRNQHYPLVPISIILSALKEDPISIKMILKHYHGYITKLCLKNGFNEVGQFITYVD EYMLRQLEIKLIEAILKFKVN >gi|307679224|gb|GL457023.1| GENE 258 253901 - 254302 351 133 aa, chain - ## HITS:1 COG:no KEGG:EF1850 NR:ns ## KEGG: EF1850 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 133 1 133 133 243 100.0 3e-63 MQQNNNEISTQHQFDAYCKKVLRNEAKSIRKRNDKIKENEEPLNDLNEGKYSQTHLDEQD VYFLFGMEILISDQKLSAAIDQLSDTRKKIVLLYYFAGFNDTEIGKIFNMSTSGIWYQRT KAVEQLKMEYGLW >gi|307679224|gb|GL457023.1| GENE 259 254870 - 256705 1267 611 aa, chain - ## HITS:1 COG:SP0060 KEGG:ns NR:ns ## COG: SP0060 COG1874 # Protein_GI_number: 15900005 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase # Organism: Streptococcus pneumoniae TIGR4 # 1 593 1 590 595 634 52.0 0 MQTFEIKEEFLVDGKPTKLISGAIHYFRMTPAQWEDSLYNLKALGANTIETYIPWNLHEP VEGVYDFEGMKDIVAFVSLAQELGLMVILRPSVYICAEWEFGGLPAWLLKEHVRLRSTDP RFIAKVRTYFSVLLPKLVPLQVTHGGPVIMMQVENEYGSYGMEKEYLRQTKQVMEEFGID VPLFTSDGAWEEVLDVGTLIEEDVFVTGNFGSHSKENATVMKAFMAKHDKKWPIMCMEYW DGWFNRWGEPIIKRDGQDLANEVKDMLALGSLNLYMFHGGTNFGFYNGCSARGVLDLPQV TSYDYDALLTEAGEPTEKYFHVQRAIKEVCPEVWQAEPRRKTFGSLGTFPVQNSVSLLAV KDQMMTAQETMYPITMEEAESGYGYMLYSVNLKNYHHENKLKVVEASDRLHLFADGSLQT IQYQENLGEEVMIKGTPEKEWIELDVLVENLGRVNYGFKLNGPTQVKGIRGGIMQDIHFH QGYRQYALTLSADQLKKIDYTAGKNPAQPSFYQAEFTLTDLADTFIDCRSYGKGVVIVNG INLGRYWQRGPIHSLYCPKEFLKKGTNEIVIFETEGIEINELIFCGQPIVKKLLTNDFSE IGSNIHNHIDS >gi|307679224|gb|GL457023.1| GENE 260 256877 - 258139 855 420 aa, chain - ## HITS:1 COG:lin2856 KEGG:ns NR:ns ## COG: lin2856 COG1455 # Protein_GI_number: 16801916 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Listeria innocua # 9 392 8 388 454 300 42.0 3e-81 MSEKIMNTIQNKVLPIATKIGNQRFLVALRDSFMGTMPVIMTGSVAILLNAFLVDFPMQF GYEKITDYFQWLVDINNLISKGSISIVSLLFIYCLGVNIAKIYKTDTLSSGLVALSSFII SISNSMTSTYNLSNNNNIDLTTLFTDVEGITVTGNSLNVTISGLLPGTQINSNGYFTAII IGFLSSIIFCKLMNKNWTIKLPDTVPPAIAKPFLSIIPALVSLYIIAILTFLLNRITGKI LTDVIYEILQRPMLGLSQSFFVVILVAFLVQFFWFFGIHGGNVMAPIMEGVFGVALLVNL EAYQNNETIPYVWTSVSYGSFVWYATLGLLIAIFWVSKNSHYKEVAKLGIMPVLFNIGEP VMYGLPTVLNPILFIPFLLCPAVMSSVAYLVTDFKLGFSSNTKCNLGNTTGLIWILFDRI >gi|307679224|gb|GL457023.1| GENE 261 258277 - 258501 160 74 aa, chain + ## HITS:1 COG:no KEGG:EF1853 NR:ns ## KEGG: EF1853 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 74 1 74 74 131 100.0 7e-30 MEDFWYHNKSVSAPISLSQCGYESYHPNSSIRNYIVQQKWIFHYVLSGKGFLEVEAQHFE LIEHDIFFFFKVKK >gi|307679224|gb|GL457023.1| GENE 262 258498 - 258662 130 54 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227519041|ref|ZP_03949090.1| ## NR: gi|227519041|ref|ZP_03949090.1| hypothetical protein HMPREF0348_2024 [Enterococcus faecalis TX0104] hypothetical protein HMPREF0346_0829 [Enterococcus faecalis HH22] hypothetical protein HMPREF0349_0777 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis Merz96] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis CH188] transcriptional regulator, AraC family [Enterococcus faecalis R712] transcriptional regulator, AraC family [Enterococcus faecalis S613] msm operon regulatory protein [Enterococcus faecium E1636] hypothetical protein HMPREF9514_01721 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9521_01336 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9515_00135 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9509_02029 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9512_01350 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9492_02141 [Enterococcus faecalis DAPTO 512] hypothetical protein HMPREF9493_01512 [Enterococcus faecalis DAPTO 516] hypothetical protein HMPREF0348_2024 [Enterococcus faecalis TX0104] hypothetical protein HMPREF0346_0829 [Enterococcus faecalis HH22] hypothetical protein HMPREF0349_0777 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis Merz96] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis CH188] transcriptional regulator, AraC family [Enterococcus faecalis R712] transcriptional regulator, AraC family [Enterococcus faecalis S613] msm operon regulatory protein [Enterococcus faecium E1636] hypothetical protein HMPREF9509_02029 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9515_00135 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9521_01336 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9514_01721 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9492_02141 [Enterococcus faecalis DAPTO 512] hypothetical protein HMPREF9512_01350 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9493_01512 [Enterococcus faecalis DAPTO 516] hypothetical protein HMPREF9496_01510 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9500_02044 [Enterococcus faecalis TX0017] hypothetical protein HMPREF9495_01300 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9513_00593 [Enterococcus faecalis TX0645] hypothetical protein HMPREF9507_00268 [Enterococcus faecalis TX0309B] hypothetical protein HMPREF9511_01912 [Enterococcus faecalis TX0630] hypothetical protein HMPREF9506_02273 [Enterococcus faecalis TX0309A] hypothetical protein EF62_2200 [Enterococcus faecalis 62] # 1 54 1 54 54 82 100.0 1e-14 MKYYTDKKEPWTLIWLGIQGDKTSEFLKETTLLNTHTVSLTKNINKKHTIENSM >gi|307679224|gb|GL457023.1| GENE 263 258756 - 259682 678 308 aa, chain - ## HITS:1 COG:YPO0011 KEGG:ns NR:ns ## COG: YPO0011 COG3328 # Protein_GI_number: 16120364 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Yersinia pestis # 1 285 115 398 402 206 36.0 3e-53 MSQRDIAATVEAIYGFDISHEMISDITDAVLPELEEWQARPLAKCYAFLFVDCMYVTLRE NYEAKEYAVYTILGYDLKGNKEILGLWLNQTESKNRWMQVFDELKARGVEDVFFISMDGV SGLEEGAKAIFPSVIVQRCIVHLVRNALRYIPSKDYKEVCRDMKKFYGASSLNAAHAAFG SFQNRWSHYSGAVDVWKRNFAHVEQLFDYGSAIRKIMYTTNAVESVHSSFRKVTKKGAFS NENALLKLLYLRTKELHAKWSGGRIQNWAMVLKQLMINETFSSRMKSMRFTFRNNGRFIQ LCVRSKFI >gi|307679224|gb|GL457023.1| GENE 264 259686 - 260048 466 120 aa, chain - ## HITS:1 COG:RSc0252 KEGG:ns NR:ns ## COG: RSc0252 COG3328 # Protein_GI_number: 17544971 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Ralstonia solanacearum # 24 120 31 124 416 84 44.0 4e-17 MARKKRNPDAEKLAESILNAYQPESVDDMQDALKDVFGPLFEKMLQGELNNHLGYDAHSK EPKEHDNRRNGYGTKTLKTSFGEVAIDVPRDREASFEPELIPKRKRDVSDIEGKVLSMYA >gi|307679224|gb|GL457023.1| GENE 265 260322 - 260582 123 86 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227519043|ref|ZP_03949092.1| ## NR: gi|227519043|ref|ZP_03949092.1| hypothetical protein HMPREF0348_2026 [Enterococcus faecalis TX0104] hypothetical protein HMPREF0349_0775 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis Merz96] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecium 1,231,408] hypothetical protein EfaeD_14121 [Enterococcus faecium DO] conserved hypothetical protein [Enterococcus faecalis R712] conserved hypothetical protein [Enterococcus faecalis S613] hypothetical protein HMPREF9514_01719 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9521_01334 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9515_00133 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9509_02027 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9512_01352 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9492_02143 [Enterococcus faecalis DAPTO 512] hypothetical protein HMPREF9493_01514 [Enterococcus faecalis DAPTO 516] hypothetical protein HMPREF0348_2026 [Enterococcus faecalis TX0104] hypothetical protein HMPREF0349_0775 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis Merz96] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecium 1,231,408] conserved hypothetical protein [Enterococcus faecalis R712] conserved hypothetical protein [Enterococcus faecalis S613] hypothetical protein HMPREF9509_02027 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9515_00133 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9521_01334 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9514_01719 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9492_02143 [Enterococcus faecalis DAPTO 512] hypothetical protein HMPREF9512_01352 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9493_01514 [Enterococcus faecalis DAPTO 516] hypothetical protein HMPREF9496_01508 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9500_02042 [Enterococcus faecalis TX0017] hypothetical protein HMPREF9495_01303 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9513_00595 [Enterococcus faecalis TX0645] hypothetical protein HMPREF9507_00266 [Enterococcus faecalis TX0309B] hypothetical protein HMPREF9511_01910 [Enterococcus faecalis TX0630] hypothetical protein HMPREF9506_02271 [Enterococcus faecalis TX0309A] # 1 86 1 86 86 84 100.0 3e-15 MKKIDLINMIGMLIGILVNIVIFTDWLGVLFSNLIPILIIGICGIILSILELFESRNTMN RIFACIILIVNLLPMVYFTFLYFALG >gi|307679224|gb|GL457023.1| GENE 266 260789 - 260878 189 29 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNDFTTEILKTLANKGDLNELLVALIIYK >gi|307679224|gb|GL457023.1| GENE 267 261187 - 261477 328 96 aa, chain + ## HITS:1 COG:BH0334 KEGG:ns NR:ns ## COG: BH0334 COG2963 # Protein_GI_number: 15612897 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Bacillus halodurans # 1 94 1 94 94 108 69.0 2e-24 MSKRTRRTFSQEFKQQIVNLYLAGKPRVEIIREYELTASAFDKWVKQSKTSGSFKEKDNL TPEQKELLELRKRNQQLEMENDILEQAALIFGRRDK >gi|307679224|gb|GL457023.1| GENE 268 261513 - 262349 346 278 aa, chain + ## HITS:1 COG:BH0335 KEGG:ns NR:ns ## COG: BH0335 COG2801 # Protein_GI_number: 15612898 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Bacillus halodurans # 1 256 1 257 261 280 52.0 3e-75 MCRILGLSRQSYYYQSKPKKDESELEEVVAEEFILSRKAYGSRKIKKALSKRGIQISRRK ISRIMKNRGLKSSYTVAYFKVHHSTCNEAKTTNVLNRKFLRDNPLEAIVTDLTYVRVGKK WNYVCFILDLFNREILGYSCGEHKDAVLVKKAFSRIRQPLTEVEIFHTDRGKEFDNQAID ELLTTFDINRSLSHKGCPFDNAVAESTYKSLKVEFVYQYTFETLQQLDLELFDYVNWWNH LRLHGTLGYETPVGYRNQRLAQRILDNELGCANASEAV >gi|307679224|gb|GL457023.1| GENE 269 262897 - 263292 368 131 aa, chain - ## HITS:1 COG:CAC2916 KEGG:ns NR:ns ## COG: CAC2916 COG0853 # Protein_GI_number: 15896169 # Func_class: H Coenzyme transport and metabolism # Function: Aspartate 1-decarboxylase # Organism: Clostridium acetobutylicum # 1 126 1 126 127 167 62.0 7e-42 MKVTMLKGKIHRAKVEQAELDYVGSITVDMDLLEAAGIYEYEKVQIVDVNNGNRFETYTI AGERGTGMICLNGAAARCVSTGDKIILMAYCELNENEVKDHRPKVVFVDDNNKVERVTSY EKHGRLSDIIL >gi|307679224|gb|GL457023.1| GENE 270 263305 - 263508 206 67 aa, chain - ## HITS:1 COG:CAC2915 KEGG:ns NR:ns ## COG: CAC2915 COG0414 # Protein_GI_number: 15896168 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate synthetase # Organism: Clostridium acetobutylicum # 2 66 217 281 281 66 56.0 1e-11 MERDSLKIIEIISKNINTYNLAKIDYVEVVDSLSLQRVNYIEKSVLVAIAVFIGKTRLID NFTFELQ >gi|307679224|gb|GL457023.1| GENE 271 263495 - 264151 369 218 aa, chain - ## HITS:1 COG:CAC2915 KEGG:ns NR:ns ## COG: CAC2915 COG0414 # Protein_GI_number: 15896168 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate synthetase # Organism: Clostridium acetobutylicum # 1 218 1 218 281 324 70.0 7e-89 MVIFKTVNDVRSQVKEWKKQGLKVGLVPTMGYLHEGHESLIRKASKENDKVVVSIFVNPT QFGKNEDLGSYPRDLERDIKVCTRGRATAIFNPEVEEMYCDNASTFVNITGLTEGLCGAS RPIHFRGVCTVVSKLFNIIPADRAYFGEKDAQQLAVIKRMVRDLNIDIDVVGCPIIREED GLAKSSRNTYLSLEERSSATILNKSLTLAKEALNNGER >gi|307679224|gb|GL457023.1| GENE 272 264166 - 264993 729 275 aa, chain - ## HITS:1 COG:CAC2914 KEGG:ns NR:ns ## COG: CAC2914 COG0413 # Protein_GI_number: 15896167 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate hydroxymethyltransferase # Organism: Clostridium acetobutylicum # 1 274 1 274 276 383 68.0 1e-106 MKNTAVTFKESKLRNEKLTMLTAYDYSTAKIIDEAGINGILVGDSLGMVCLGHEDTLSVT MEDMIHHTRAVTRGAKNTLVVADMPFMSYQTSVYDSVVNAGRLIKEGRAQVVKLEGGIEV CDKIEAIVKASIPVMAHIGLTPQSVNAFGGFKVQGKDKEAAKELIRAAKAVEKAGAFAVV LECVPTKLAELISKEISIPTIGIGAGAGCDGQILVYQDMLGMYSDFTPKFVKKYANLSEE MNKAFTKYIEEVKDGVFPGPEHGFKISDDVLEKLY >gi|307679224|gb|GL457023.1| GENE 273 265005 - 265256 253 83 aa, chain - ## HITS:1 COG:no KEGG:EF1861 NR:ns ## KEGG: EF1861 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 83 199 281 281 164 100.0 1e-39 MAIEALYPLIEFNIRNIKEKGIIESLTGPVERCDISTIKGHCEVLSDEDRALYMLLSKNV LEIAMLKNINRDYSELEKYLGES Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:45:44 2011 Seq name: gi|307679223|gb|GL457024.1| Enterococcus faecalis TX2141 genomic scaffold Scfld95, whole genome shotgun sequence Length of sequence - 604 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 252 187 ## LACR_A05 hypothetical protein 2 1 Op 2 . - CDS 245 - 604 314 ## COG5527 Protein involved in initiation of plasmid replication Predicted protein(s) >gi|307679223|gb|GL457024.1| GENE 1 3 - 252 187 83 aa, chain - ## HITS:1 COG:no KEGG:LACR_A05 NR:ns ## KEGG: LACR_A05 # Name: not_defined # Def: hypothetical protein # Organism: L.lactis_SK11 # Pathway: not_defined # 1 83 1 83 178 118 93.0 1e-25 MSENLKTIKEIADEIGVSKQAVWQKIKKESSIDLRQFTSKKGNTVYVDIDGQKVIKNAFF NKTSTKKRQQKVFVDDNVNNSVD >gi|307679223|gb|GL457024.1| GENE 2 245 - 604 314 119 aa, chain - ## HITS:1 COG:pli0023 KEGG:ns NR:ns ## COG: pli0023 COG5527 # Protein_GI_number: 18450306 # Func_class: L Replication, recombination and repair # Function: Protein involved in initiation of plasmid replication # Organism: Listeria innocua # 1 103 284 386 386 127 66.0 6e-30 EKQKEQSEAVLVKQAMESKYTRLLLDNMLLSPYEMTDTSLMAGLQAHVYPLYDELKALRG LNGVKDHLSYVRAKQEAYSKRNIAKYLKKAIEQYLPTVKLQDLEQPERASVRGKGEIHE Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:46:21 2011 Seq name: gi|307679222|gb|GL457025.1| Enterococcus faecalis TX2141 genomic scaffold Scfld97, whole genome shotgun sequence Length of sequence - 115294 bp Number of predicted genes - 123, with homology - 117 Number of transcription units - 58, operones - 34 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 145 91 ## gi|315165644|gb|EFU09661.1| conserved hypothetical protein + Term 359 - 404 15.3 - Term 347 - 392 15.3 2 2 Op 1 9/0.000 - CDS 400 - 726 347 ## COG4392 Predicted membrane protein 3 2 Op 2 . - CDS 713 - 1420 765 ## COG1296 Predicted branched-chain amino acid permease (azaleucine resistance) 4 2 Op 3 . - CDS 1417 - 1518 120 ## - Prom 1623 - 1682 10.3 + Prom 1510 - 1569 8.7 5 3 Op 1 . + CDS 1634 - 2185 676 ## COG1396 Predicted transcriptional regulators + Prom 2206 - 2265 4.5 6 3 Op 2 . + CDS 2298 - 3629 984 ## EF2507 hypothetical protein + Term 3652 - 3704 8.0 + Prom 3685 - 3744 12.5 7 4 Op 1 . + CDS 3829 - 7893 3751 ## COG4932 Predicted outer membrane protein + Prom 7999 - 8058 3.5 8 4 Op 2 . + CDS 8092 - 8793 521 ## EF2504 hypothetical protein 9 4 Op 3 . + CDS 8794 - 10230 1142 ## EF2503 hypothetical protein + Term 10360 - 10413 17.4 + Prom 10397 - 10456 9.2 10 5 Op 1 . + CDS 10512 - 10592 165 ## 11 5 Op 2 . + CDS 10597 - 11040 443 ## gi|315144815|gb|EFT88831.1| hypothetical protein HMPREF9495_01321 + Prom 11162 - 11221 7.1 12 6 Op 1 1/0.091 + CDS 11249 - 12436 1199 ## COG0772 Bacterial cell division membrane protein 13 6 Op 2 4/0.000 + CDS 12461 - 12820 423 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family 14 6 Op 3 . + CDS 12817 - 13140 495 ## COG0509 Glycine cleavage system H protein (lipoate-binding) + Prom 13224 - 13283 3.6 15 6 Op 4 . + CDS 13314 - 13394 97 ## + Term 13422 - 13482 14.6 + Prom 13469 - 13528 8.0 16 7 Op 1 32/0.000 + CDS 13555 - 14592 1351 ## COG1135 ABC-type metal ion transport system, ATPase component 17 7 Op 2 22/0.000 + CDS 14585 - 15271 826 ## COG2011 ABC-type metal ion transport system, permease component 18 7 Op 3 . + CDS 15286 - 16104 1114 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen + Term 16264 - 16316 3.4 + Prom 16364 - 16423 9.0 19 8 Op 1 32/0.000 + CDS 16452 - 17267 791 ## COG0020 Undecaprenyl pyrophosphate synthase 20 8 Op 2 . + CDS 17264 - 18064 945 ## COG0575 CDP-diglyceride synthetase + Term 18102 - 18152 17.1 - Term 18219 - 18256 7.3 21 9 Tu 1 . - CDS 18444 - 18533 108 ## - Prom 18624 - 18683 6.8 + Prom 18577 - 18636 10.7 22 10 Op 1 . + CDS 18697 - 19347 695 ## COG2102 Predicted ATPases of PP-loop superfamily + Prom 19349 - 19408 5.5 23 10 Op 2 . + CDS 19435 - 19662 404 ## EF2483 hypothetical protein + Term 19663 - 19715 11.2 + Prom 19689 - 19748 9.2 24 11 Op 1 . + CDS 19810 - 20541 605 ## COG0546 Predicted phosphatases + Prom 20546 - 20605 6.3 25 11 Op 2 . + CDS 20718 - 21173 311 ## COG1943 Transposase and inactivated derivatives + Term 21273 - 21303 5.0 - Term 21261 - 21291 5.0 26 12 Tu 1 . - CDS 21299 - 22411 831 ## gi|315144828|gb|EFT88844.1| hypothetical protein HMPREF9495_01334 - Prom 22434 - 22493 5.9 - Term 22468 - 22505 5.1 27 13 Tu 1 . - CDS 22513 - 23064 629 ## EF1241 hypothetical protein - Prom 23214 - 23273 10.5 - Term 23163 - 23221 7.2 28 14 Op 1 . - CDS 23287 - 24096 854 ## COG1512 Beta-propeller domains of methanol dehydrogenase type 29 14 Op 2 . - CDS 24093 - 25238 912 ## EF2478 hypothetical protein - Term 25279 - 25321 5.3 30 15 Tu 1 . - CDS 25342 - 26574 1222 ## COG4260 Putative virion core protein (lumpy skin disease virus) - Prom 26693 - 26752 9.9 + Prom 26695 - 26754 4.5 31 16 Op 1 . + CDS 26782 - 28824 2317 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 + Term 28840 - 28886 8.7 32 16 Op 2 20/0.000 + CDS 28904 - 29659 285 ## PROTEIN SUPPORTED gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase 33 16 Op 3 2/0.091 + CDS 29631 - 30185 292 ## PROTEIN SUPPORTED gi|58336726|ref|YP_193311.1| ribosomal protein ala-acetyltransferase 34 16 Op 4 9/0.000 + CDS 30193 - 30657 195 ## PROTEIN SUPPORTED gi|119946836|ref|YP_944516.1| ribosomal-protein-alanine acetyltransferase 35 16 Op 5 . + CDS 30654 - 31700 721 ## PROTEIN SUPPORTED gi|229232313|ref|ZP_04356740.1| (SSU ribosomal protein S18P)-alanine acetyltransferase + Term 31937 - 31989 18.0 + Prom 31940 - 31999 7.8 36 17 Tu 1 . + CDS 32020 - 33711 2209 ## COG0018 Arginyl-tRNA synthetase + Prom 33770 - 33829 5.4 37 18 Tu 1 . + CDS 33852 - 34367 630 ## COG1418 Predicted HD superfamily hydrolase + Term 34374 - 34407 3.1 - Term 34360 - 34393 3.1 38 19 Tu 1 . - CDS 34449 - 34742 323 ## EF2469 Cro/CI family transcriptional regulator - Prom 34936 - 34995 6.7 + Prom 34849 - 34908 6.8 39 20 Tu 1 . + CDS 34949 - 35197 256 ## EF2467 hypothetical protein + Term 35320 - 35367 8.2 + Prom 35322 - 35381 4.3 40 21 Op 1 . + CDS 35408 - 36673 1181 ## COG0038 Chloride channel protein EriC 41 21 Op 2 2/0.091 + CDS 36723 - 37001 451 ## COG4476 Uncharacterized protein conserved in bacteria 42 21 Op 3 1/0.091 + CDS 37002 - 37784 1041 ## COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family + Term 37790 - 37831 3.4 + Prom 37892 - 37951 6.4 43 22 Tu 1 . + CDS 38005 - 39840 2248 ## COG1217 Predicted membrane GTPase involved in stress response + Term 39865 - 39910 1.4 + Prom 39898 - 39957 9.4 44 23 Tu 1 . + CDS 40158 - 41927 2091 ## COG0514 Superfamily II DNA helicase + Term 42051 - 42106 9.5 + Prom 42070 - 42129 10.0 45 24 Op 1 3/0.091 + CDS 42154 - 42459 403 ## COG4838 Uncharacterized protein conserved in bacteria 46 24 Op 2 4/0.000 + CDS 42463 - 43671 1408 ## COG0772 Bacterial cell division membrane protein 47 24 Op 3 . + CDS 43704 - 47132 4077 ## COG1038 Pyruvate carboxylase 48 24 Op 4 2/0.091 + CDS 47149 - 48273 1019 ## COG2340 Uncharacterized protein with SCP/PR1 domains 49 24 Op 5 3/0.091 + CDS 48270 - 48704 222 ## PROTEIN SUPPORTED gi|163764796|ref|ZP_02171849.1| ribosomal protein S17 50 24 Op 6 2/0.091 + CDS 48694 - 49044 494 ## COG4471 Uncharacterized protein conserved in bacteria + Term 49046 - 49109 16.1 + Prom 49053 - 49112 7.3 51 25 Op 1 14/0.000 + CDS 49143 - 49697 757 ## COG0742 N6-adenine-specific methylase 52 25 Op 2 4/0.000 + CDS 49699 - 50190 334 ## PROTEIN SUPPORTED gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 53 25 Op 3 . + CDS 50195 - 51247 471 ## PROTEIN SUPPORTED gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 + Term 51250 - 51308 19.5 + Prom 51257 - 51316 5.8 54 26 Op 1 4/0.000 + CDS 51343 - 51987 727 ## COG1555 DNA uptake protein and related DNA-binding proteins + Prom 51990 - 52049 4.7 55 26 Op 2 . + CDS 52110 - 52613 435 ## COG2131 Deoxycytidylate deaminase + Term 52623 - 52665 3.1 56 27 Tu 1 . + CDS 52755 - 52823 67 ## + Prom 52842 - 52901 3.1 57 28 Op 1 . + CDS 52936 - 53235 176 ## EF2447 DNA internalization-related competence protein ComEC/Rec2 58 28 Op 2 4/0.000 + CDS 53187 - 54911 722 ## COG2333 Predicted hydrolase (metallo-beta-lactamase superfamily) 59 28 Op 3 . + CDS 54969 - 55997 1251 ## COG1466 DNA polymerase III, delta subunit + Term 55998 - 56057 18.1 - Term 55985 - 56045 18.2 60 29 Tu 1 . - CDS 56049 - 56990 1220 ## COG1893 Ketopantoate reductase - Prom 57024 - 57083 7.3 + Prom 57031 - 57090 4.2 61 30 Tu 1 . + CDS 57180 - 57716 413 ## COG1607 Acyl-CoA hydrolase + Term 57722 - 57766 6.2 - Term 57755 - 57797 4.5 62 31 Tu 1 . - CDS 57803 - 58117 509 ## PROTEIN SUPPORTED gi|227519840|ref|ZP_03949889.1| ribosomal protein S20 - Prom 58192 - 58251 5.0 + Prom 58206 - 58265 7.3 63 32 Op 1 21/0.000 + CDS 58286 - 59299 969 ## COG0306 Phosphate/sulphate permeases 64 32 Op 2 . + CDS 59312 - 59935 814 ## COG1392 Phosphate transport regulator (distant homolog of PhoU) 65 32 Op 3 . + CDS 59955 - 60740 864 ## COG3394 Uncharacterized protein conserved in bacteria + Term 60743 - 60782 9.3 - Term 60724 - 60775 16.2 66 33 Tu 1 . - CDS 60779 - 61609 886 ## COG1968 Uncharacterized bacitracin resistance protein - Prom 61647 - 61706 10.8 + Prom 61651 - 61710 8.0 67 34 Tu 1 . + CDS 61791 - 62285 709 ## COG2190 Phosphotransferase system IIA components + Prom 62324 - 62383 16.6 68 35 Op 1 2/0.091 + CDS 62485 - 63594 1073 ## COG3589 Uncharacterized conserved protein 69 35 Op 2 9/0.000 + CDS 63569 - 64459 1235 ## COG2103 Predicted sugar phosphate isomerase 70 35 Op 3 3/0.091 + CDS 64482 - 65936 2012 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Term 65943 - 65987 5.1 + Prom 65938 - 65997 5.1 71 35 Op 4 . + CDS 66023 - 66871 1027 ## COG1737 Transcriptional regulators + Term 66879 - 66929 17.1 - Term 66865 - 66915 17.1 72 36 Op 1 1/0.091 - CDS 66921 - 67631 946 ## COG0406 Fructose-2,6-bisphosphatase 73 36 Op 2 . - CDS 67672 - 68298 740 ## COG0491 Zn-dependent hydrolases, including glyoxylases - Prom 68327 - 68386 7.2 + Prom 68433 - 68492 11.2 74 37 Op 1 4/0.000 + CDS 68518 - 69903 1631 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 75 37 Op 2 1/0.091 + CDS 69907 - 71238 358 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 71318 - 71359 4.0 + Prom 71241 - 71300 9.1 76 38 Tu 1 . + CDS 71380 - 72357 1238 ## COG0516 IMP dehydrogenase/GMP reductase + Term 72382 - 72441 17.7 + Prom 72412 - 72471 5.9 77 39 Op 1 . + CDS 72519 - 72851 214 ## PROTEIN SUPPORTED gi|18309686|ref|NP_561620.1| 30S ribosomal protein 78 39 Op 2 . + CDS 72848 - 73876 963 ## EF2427 hypothetical protein + Term 73901 - 73952 11.3 + Prom 73919 - 73978 3.7 79 40 Op 1 . + CDS 74011 - 75462 1568 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs + Prom 75493 - 75552 9.5 80 40 Op 2 . + CDS 75583 - 77307 2369 ## COG1109 Phosphomannomutase + Term 77347 - 77402 15.4 81 41 Tu 1 . + CDS 77414 - 78196 1006 ## COG0345 Pyrroline-5-carboxylate reductase + Term 78202 - 78255 9.0 + Prom 78255 - 78314 3.6 82 42 Op 1 . + CDS 78334 - 78621 365 ## COG0640 Predicted transcriptional regulators 83 42 Op 2 11/0.000 + CDS 78673 - 79965 1470 ## COG0460 Homoserine dehydrogenase 84 42 Op 3 19/0.000 + CDS 79968 - 81023 1466 ## COG0498 Threonine synthase 85 42 Op 4 . + CDS 81020 - 81883 964 ## COG0083 Homoserine kinase + Term 81890 - 81931 9.2 - Term 81878 - 81919 9.2 86 43 Tu 1 . - CDS 81926 - 82783 863 ## COG1806 Uncharacterized protein conserved in bacteria - Prom 82813 - 82872 6.5 + Prom 82772 - 82831 5.4 87 44 Tu 1 . + CDS 82888 - 83322 444 ## COG0735 Fe2+/Zn2+ uptake regulation proteins + Prom 83339 - 83398 3.6 88 45 Op 1 9/0.000 + CDS 83425 - 83664 400 ## PROTEIN SUPPORTED gi|227519866|ref|ZP_03949915.1| 30S ribosomal protein S21 89 45 Op 2 1/0.091 + CDS 83690 - 84139 420 ## PROTEIN SUPPORTED gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 + Term 84150 - 84191 9.0 + Prom 84233 - 84292 6.0 90 46 Op 1 4/0.000 + CDS 84322 - 85296 1254 ## COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase 91 46 Op 2 7/0.000 + CDS 85325 - 87523 992 ## PROTEIN SUPPORTED gi|163762592|ref|ZP_02169656.1| ribosomal protein S21 92 46 Op 3 11/0.000 + CDS 87523 - 88002 632 ## COG0319 Predicted metal-dependent hydrolase 93 46 Op 4 3/0.091 + CDS 87986 - 88387 411 ## COG0818 Diacylglycerol kinase 94 46 Op 5 16/0.000 + CDS 88401 - 89303 1222 ## COG1159 GTPase + Term 89308 - 89368 4.1 95 46 Op 6 3/0.091 + CDS 89386 - 90180 792 ## COG1381 Recombinational DNA repair protein (RecF pathway) + Term 90411 - 90453 9.0 + Prom 90649 - 90708 8.1 96 47 Op 1 19/0.000 + CDS 90949 - 91857 1138 ## COG0752 Glycyl-tRNA synthetase, alpha subunit 97 47 Op 2 . + CDS 91859 - 93943 2758 ## COG0751 Glycyl-tRNA synthetase, beta subunit 98 47 Op 3 . + CDS 93983 - 94174 312 ## gi|315144754|gb|EFT88770.1| conserved hypothetical protein + Term 94180 - 94214 4.5 - Term 94168 - 94202 3.5 99 48 Tu 1 . - CDS 94208 - 95140 1133 ## COG0706 Preprotein translocase subunit YidC - Prom 95172 - 95231 6.5 - Term 95183 - 95225 2.2 100 49 Tu 1 . - CDS 95307 - 95582 357 ## COG1254 Acylphosphatases - Prom 95704 - 95763 6.4 101 50 Op 1 . + CDS 95689 - 96465 206 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 102 50 Op 2 . + CDS 96485 - 96922 589 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 96983 - 97020 -1.0 + Prom 96924 - 96983 5.3 103 51 Op 1 38/0.000 + CDS 97106 - 97891 1336 ## PROTEIN SUPPORTED gi|29376895|ref|NP_816049.1| 30S ribosomal protein S2 + Term 97905 - 97966 2.4 + Prom 97913 - 97972 2.3 104 51 Op 2 24/0.000 + CDS 97997 - 98878 582 ## PROTEIN SUPPORTED gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts + Term 98997 - 99039 3.1 + Prom 98965 - 99024 3.5 105 51 Op 3 33/0.000 + CDS 99139 - 99861 1043 ## COG0528 Uridylate kinase 106 51 Op 4 . + CDS 99865 - 100422 1002 ## COG0233 Ribosome recycling factor + Term 100447 - 100487 3.4 + Prom 100533 - 100592 12.1 107 52 Op 1 41/0.000 + CDS 100792 - 101562 194 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 108 52 Op 2 24/0.000 + CDS 101577 - 102863 1610 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 109 52 Op 3 19/0.000 + CDS 102860 - 104095 1547 ## COG0520 Selenocysteine lyase 110 52 Op 4 6/0.000 + CDS 104082 - 104549 643 ## COG0822 NifU homolog involved in Fe-S cluster formation 111 52 Op 5 . + CDS 104568 - 105962 1676 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component + Term 105974 - 106020 11.2 112 53 Op 1 . - CDS 106057 - 107199 668 ## COG0582 Integrase 113 53 Op 2 . - CDS 107238 - 107972 455 ## gi|315144769|gb|EFT88785.1| hypothetical protein HMPREF9495_01422 - Prom 108020 - 108079 6.3 + Prom 108017 - 108076 8.8 114 54 Op 1 . + CDS 108204 - 108479 373 ## gi|307277177|ref|ZP_07558281.1| DNA binding domain, excisionase family + Term 108494 - 108555 15.4 + Prom 108494 - 108553 6.0 115 54 Op 2 . + CDS 108577 - 110574 1132 ## Dred_0377 hypothetical protein + Term 110613 - 110653 3.1 - Term 110605 - 110638 2.0 116 55 Tu 1 . - CDS 110650 - 110985 271 ## gi|307295149|ref|ZP_07574989.1| helix-turn-helix protein - Prom 111049 - 111108 6.3 + Prom 111006 - 111065 4.6 117 56 Op 1 . + CDS 111114 - 111329 304 ## gi|314938405|ref|ZP_07845696.1| helix-turn-helix protein 118 56 Op 2 . + CDS 111366 - 111731 374 ## Bcell_3752 hypothetical protein 119 56 Op 3 . + CDS 111768 - 112094 283 ## gi|307292468|ref|ZP_07572319.1| conserved domain protein + Prom 112151 - 112210 5.8 120 57 Op 1 . + CDS 112248 - 112973 421 ## gi|312952953|ref|ZP_07771809.1| hypothetical protein HMPREF9504_02068 121 57 Op 2 . + CDS 112973 - 113050 73 ## + Term 113222 - 113279 -0.9 + Prom 113383 - 113442 10.8 122 58 Op 1 27/0.000 + CDS 113482 - 115074 1538 ## COG0286 Type I restriction-modification system methyltransferase subunit 123 58 Op 2 . + CDS 115067 - 115285 281 ## COG0732 Restriction endonuclease S subunits Predicted protein(s) >gi|307679222|gb|GL457025.1| GENE 1 2 - 145 91 47 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315165644|gb|EFU09661.1| ## NR: gi|315165644|gb|EFU09661.1| conserved hypothetical protein [Enterococcus faecalis TX1302] # 1 47 146 192 192 80 91.0 5e-14 IRNIQIHNFTKWSEEHVPEENPFEEEPEHCETIDEFVDEYFDDEWIE >gi|307679222|gb|GL457025.1| GENE 2 400 - 726 347 108 aa, chain - ## HITS:1 COG:L54406 KEGG:ns NR:ns ## COG: L54406 COG4392 # Protein_GI_number: 15673594 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 1 105 1 105 108 105 67.0 2e-23 MPSSEYLFLTILGCTVATWLSRILPFLLLKKISLPQKLLEYLSFVPIVIMSALWFSSLFE QRIGHLPSLNLPYLFASFPTILAAILTKNLLLIVLVGIASFALIQNFI >gi|307679222|gb|GL457025.1| GENE 3 713 - 1420 765 235 aa, chain - ## HITS:1 COG:L54719 KEGG:ns NR:ns ## COG: L54719 COG1296 # Protein_GI_number: 15673595 # Func_class: E Amino acid transport and metabolism # Function: Predicted branched-chain amino acid permease (azaleucine resistance) # Organism: Lactococcus lactis # 1 235 1 235 235 242 60.0 5e-64 MNHQLDAPTGIREALPTVFGYIGIGIAFGIVGQAAGFSPLIVSAMSFFIFAGSAQFVTVS MLTGGSPILSIVLATFLVNARMILMGMTIEPYFKAESLGKNLWLGTLLTDESFALGMNKL NHTKGRLSFEWFNAANLISYATWVFSTIIGAYLGRFIANPQALGLEFAVVAMFIGLLYLQ IISDRSMKIALQLIMVLITFGLMSIGLIFIPSNLIVLVVTLIGCGIGVMIKHAFF >gi|307679222|gb|GL457025.1| GENE 4 1417 - 1518 120 33 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKTLIRSLCLIIEGLDFQTHVFKFYTERRKKRE >gi|307679222|gb|GL457025.1| GENE 5 1634 - 2185 676 183 aa, chain + ## HITS:1 COG:BH2909 KEGG:ns NR:ns ## COG: BH2909 COG1396 # Protein_GI_number: 15615472 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 7 173 10 174 189 129 38.0 4e-30 MEINTIIGNNLKKIRQEKKLTLDELAGVTGVSKGMLSQIEKGTTNPTINTIWKISNGLNV PYTYLLEDDYVKENPVVKKTETVTQHSEDHSYRVFNYYSDNQERNFELFQFELDPGKKYQ AVGDSKRSTEYVMVIQGALAIEVGGQRYLLPKDAAMYFDANQVHTYINDGTEKVQAVVIN YYT >gi|307679222|gb|GL457025.1| GENE 6 2298 - 3629 984 443 aa, chain + ## HITS:1 COG:no KEGG:EF2507 NR:ns ## KEGG: EF2507 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 443 1 443 443 661 99.0 0 MNKKIESLGNTALSLLSNTIIVVPYLLYIQLSDGHNLLTILPFVLFYTLRMTGIFLVRGI NLSLTSLGLLKISLLLGLAGSLIGIAGAYSFPLYSISGMLLGLSGALLPPSNQSIRFFLK EEGQKISHSNLLTTVLLTAVLFGALFFKATEIGLALLVYALYFLVALVAIKSYPVSLNEL EEESAEVSRKELILFVIFFVLLLLLRSGRLLTNAVEFDYAIVGACCFFVVAVLFVSHYGK RGAYKVSLEMNLATLINGIVGNYLFLFGSIYVAGVYGRAHMGIYLYLPYVLGMIFAMIVA SKTKQWSNNIPMVGLAGSLGILLLTSWTILGLFLLSFFKSTLNSFLARRYYQETDLPKDS RILIKYTTQTKGSLFHQFILMALMLVTVVGKGGTTQFLLELTGGKGISMQTSQFLTFIKN SNSLLVLLFIAVYFVVVFRQKKR >gi|307679222|gb|GL457025.1| GENE 7 3829 - 7893 3751 1354 aa, chain + ## HITS:1 COG:lin2282 KEGG:ns NR:ns ## COG: lin2282 COG4932 # Protein_GI_number: 16801346 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Listeria innocua # 735 1021 799 1092 1806 68 27.0 7e-11 MMLSILLAQNFGFAVNAYAVTTTEAQTETTDTAKKEAELSNSTPSLPLATTTTSEMNQPT ATTESQTTEASTTASSDAATPSEQQTTEGKDTSLNEKALPDVQAPITDELLDSMSLAPIG GTEYSQTEVHRELNTTPVTATFQFAVGNTGYAPGSVYTVQLPEHLGYSTVSGEVTGIGAT WAVDAATKTLSITFNQRVSDTSFKVELKSYLTTEAEPLIKIETPGKNKKTYSFDLYEQVE PIQYNERTRTTGLDGEIFYNLDRTLTGNQTLELLTTETPGAVFGKQDNLEPQVFSYDVDI NGQILPETQTLLTPGKDYTLSDNSLGRIAVTVPNMNQQKAYSLSINRTIYLESASDYNYL YSQQYPTTKIGSISLKSTTGTKQTTDFTAKTSQTSKVIADREMRSMSYISFQSKGKYYVT IYGTLTETKVGQQIVLESTNGQEIKNPKFTAYGPLYENVKLEDYFDIKTEGGRLILTATK DSYLRINISDLTMDFDKKDINLSLSTPVIGPNKAIQLVSDQYIEPISVVNPLNAETAWGN YDQNGAYSSRTTVSVMGSKETPIQNLEIKVKHPNYLSLRATKEIYFYYKLGTDYTVTPTS DGSVIKFTTPITNEIQIPIGFNYVPDSLPKDKSIPVDTIPITMSAEGLTPVDTTVTTNSK RGSERTLQSSKNQFLVNARNDSFDSLSVRTKIPAGADVLFDIYDVSNDQVDSIYPQYWDR GYYFDKPMSPDSPGYPTITFDENTNSYTFDFGKTNKRYIIEYKNANGWIDVPTLYITGTA KEPQSNNNEGSASVSVQNEALDILSATQAANPTLKNVTKTTVTTKNIDNKTHRVKNPTIE LTPKGTTNAQIDLNSITVKGVPEDAYSLEKTTNGAKIIFKDYTLTENITIEYNTVSANAG QIYTETTIDSEILDQMSASKKKVTTAPITLKFSEGDAEGIVYLATATFYTHNIEDENQAI AKVSFELIDNVTHTATEFTTDEKGQYSFDAIMTGDYTLRVTNVPQEYSVDEEYLTGKAIK LVKGDNQLKIPLTKTIDHSRLQVKDTTIYVGDSWKPEENFVSATDKTGQDVPFEKITVSG QVDTSKAGVYPIVYSYEGKEETANVTVKADQSKLEVKDSTIYVGDSWEAEENFVSATDKT GQDVPFEKITVSGQVDTSKAGVYPIVYSYEGKEETAHVTVKPDQSKLEVKDTTIYVGDSW KPEDNFVSATDRDGHAISFDKVQVKGEVDTKKTGEYQISYTTEPVNETKPAVQSRLFAMF SNETPRQLTTVATVHVIDRNPTPLPDKNENNQTSSSTNQTTIKRSQYVTHIVKPDKQGRY PKTGEQTNGLYRVLGLVVLLIVIISGIVIKKKRK >gi|307679222|gb|GL457025.1| GENE 8 8092 - 8793 521 233 aa, chain + ## HITS:1 COG:no KEGG:EF2504 NR:ns ## KEGG: EF2504 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 233 1 233 233 424 99.0 1e-117 MNQRTIYYGSIGTALFLSSGMLIASVNSYANEATTPGKYTVTYEVDGKIETATITVKENQ TELKLKDTFLGVNQAWSPLDNVVFLKDKEGRPLNLENVIIENNVNTQKVGLYFVTFRYES YLSIAKVYVNPTNFAAEGNMLAELPYSQAMIGPERPIIASRQDKEQQTKQEKKKNKIEQE RVNKKVLLNDELLKKIDTIAPVEITGGAASGASQFGTTLSFLSGSLLYGTRRV >gi|307679222|gb|GL457025.1| GENE 9 8794 - 10230 1142 478 aa, chain + ## HITS:1 COG:no KEGG:EF2503 NR:ns ## KEGG: EF2503 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 478 1 478 478 859 98.0 0 MEFLLLDDRENLKLAIIRKLEQQYSFSERKDRLCKQLAISPYLLERNITEINADLQRFGL INEMEISEKNNEILLSQSLRISSSIIEEYYLKDSLEFNLLKTIFFHQFTSIKKYGEKHGM SRTVVYKIVDHIRKELGQYGIKLSKNLQLSGNEMAIRQYFTMLYYRIYKDSEEVYNQTDL RAVNQLLAQLKGSYENITNFHLFKHYVLVALERTQRKANYFLSQEENPFVFDEESSIYQE IQCWINEVMKATRAEKNAEIQGIIGNLSVYQSELISEHLLSSHNEAITATKTLFFSYMPF TISDEEFYQEIVPIIYQHRFITPFIDITLRIMDLEFFQERYPIVFDSCRQFLFALDCSAF EFSKLSLFFDLLLVLSRLYDQRNEKSTINLYVNFTQGEKYTQFIKEQIKIFESFSIHFHS AIRPDTDLVVSDYLPKTLFSVKCLIWLAPPRASDWQNFGNEIVRINKELQQTKQRKSE >gi|307679222|gb|GL457025.1| GENE 10 10512 - 10592 165 26 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKFLKISLVSVILLLILTSCVIVRM >gi|307679222|gb|GL457025.1| GENE 11 10597 - 11040 443 147 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315144815|gb|EFT88831.1| ## NR: gi|315144815|gb|EFT88831.1| hypothetical protein HMPREF9495_01321 [Enterococcus faecalis TX2141] # 1 147 1 147 147 269 100.0 4e-71 MKKNIWLFVLALLILTGCKININSPQSARDDNYGETTQASTSINEVDDKLAGTMFSKKGS GDDVFTNLAFKKGPVIANITFKGTEKIVVRIVDSDGQEIAKLIDTQGNYIGKTMAQIPKD ADTYILEIKAEGSWSIQFSEANTKANQ >gi|307679222|gb|GL457025.1| GENE 12 11249 - 12436 1199 395 aa, chain + ## HITS:1 COG:L115706 KEGG:ns NR:ns ## COG: L115706 COG0772 # Protein_GI_number: 15672878 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Lactococcus lactis # 3 386 5 388 414 380 53.0 1e-105 MNRKEKTNLDSRIDYGVILPVFLLSLIGMLSLYVALYNDPSKPKIGSLLMKQGLWYLVGG LSIVIIMHFSSKLLWRLTPVFYALGLVLMGLLLKFYDPVLAEQTGSKNWIRFGGTTFQPS ELMKIAFILMLAYIVTMHNVKYVDRTLKSDFWLIAKMLLVAIPVIVLVLLQKDFGTMLVF LAIFGGVFLMSGITWKIIVPAFIIAALVGAGTIYLVTTETGRDLLSKIGIKAYQFDRIDL WLNPFHTDPDRSFQPALALTAIGSGGLFGKGFNVSDVYVPVRESDMIFTVVGENFGFIGG CFIILLYFILIYRMIRVCFDTNNEFYAYIATGIIMMILFHVFENIGANIGLLPLTGIPLP FISQGGSSILGNMIGVGLIMSMRYQQETVRTRSGR >gi|307679222|gb|GL457025.1| GENE 13 12461 - 12820 423 119 aa, chain + ## HITS:1 COG:lin2520 KEGG:ns NR:ns ## COG: lin2520 COG1393 # Protein_GI_number: 16801582 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Listeria innocua # 1 115 1 114 117 134 57.0 5e-32 MYTLYEYPKCSTCKKAKAWLDQQGVKYQAIDIKATPPSSEQLAKWMKETGLPVRRFFNTS GVLYREQGLKDLVDSFSIEEASQRLAADGMLIKRPILLKNNTFLTNGFKEADYEGVLGK >gi|307679222|gb|GL457025.1| GENE 14 12817 - 13140 495 107 aa, chain + ## HITS:1 COG:lin2519 KEGG:ns NR:ns ## COG: lin2519 COG0509 # Protein_GI_number: 16801581 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system H protein (lipoate-binding) # Organism: Listeria innocua # 11 107 15 114 125 73 40.0 1e-13 MREMKQIDQLWILPTEAGYKIGLTAEAQEDLGKITFATFPKVGQTLAKGDSLIELEAEKA VSEFSSPLSGKVVAINEAADQEPSALDEENAWIAVLADVEPTEFENL >gi|307679222|gb|GL457025.1| GENE 15 13314 - 13394 97 26 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNLLRGARYSQRYAKNQVPYEVIIEK >gi|307679222|gb|GL457025.1| GENE 16 13555 - 14592 1351 345 aa, chain + ## HITS:1 COG:lin2514 KEGG:ns NR:ns ## COG: lin2514 COG1135 # Protein_GI_number: 16801576 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Listeria innocua # 3 342 1 338 340 386 58.0 1e-107 MALIELRHVKKEFSGKAGKVTALKDIDLTVESGDIYGIIGYSGAGKSTLVRLLNGLETPT EGEVEIQGQDIALLPNKELRNFRKKIGMIFQHFNLLWSRTVLENIMLPLEIAGVPKQNRK SRAEELIKLVGLEGRETAYPSQLSGGQKQRVGIARALANNPDILLCDEATSALDPQTTDE VLELLLKINQELNLTVVLITHEMHVIRKICNRVAVMEYGEIVEEGKVIDIFKKPQTEIAK RFIQQEADKNIEETELVVEEMLEQYPNGKIVRLLFHGEQAKLPIISHIVQEYQVEVSIIQ GNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLRVETEVIGNE >gi|307679222|gb|GL457025.1| GENE 17 14585 - 15271 826 228 aa, chain + ## HITS:1 COG:BH3480 KEGG:ns NR:ns ## COG: BH3480 COG2011 # Protein_GI_number: 15616042 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Bacillus halodurans # 20 228 10 218 218 220 61.0 2e-57 MNNRGLASFFDFSQIDISKLQEKTIETLYMTGISIIVVAILGLILGLLLFETSGRKGILS RLLYWLVAIFVNIFRSIPFIILIVLLIPFTKIILGSMSGVKGSLPALIISAAPFYARMVE IAFREVDKGVIEAAKAMGANRFQIIWKVLLPESLPALVSGLTVTTISLVGYTAMAAAIGA GGLGSLAYQDGFQRGQNTVTLVATICILIIVFAIQWLGDTVAKKIDKR >gi|307679222|gb|GL457025.1| GENE 18 15286 - 16104 1114 272 aa, chain + ## HITS:1 COG:lin2512 KEGG:ns NR:ns ## COG: lin2512 COG1464 # Protein_GI_number: 16801574 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Listeria innocua # 4 272 2 276 276 282 53.0 4e-76 MKKRTLWSVITVAAAVLILGACGNKKSDDSVLKVGASPVPHAEILEHVKPLLEKEGVKLE VTTYTDYVLPNKALESGDIDANYFQHVPFFNEAVKENDYDFVNAGAIHLEPVGLYSKKYK SLQEIPDGSTIYVSSSVSDWPRVLTILEDAGLITLKEGVDRTTATFDDIDKNTKKLKFNH ESDPAIMTTLYDNEEGAAVLINSNFAVDQGLNPKKDAIALEKESSPYANIIAVRKEDENN ENVKKLVKVLRSKEVQDWITKKWNGAIVPVNE >gi|307679222|gb|GL457025.1| GENE 19 16452 - 17267 791 271 aa, chain + ## HITS:1 COG:lin1352 KEGG:ns NR:ns ## COG: lin1352 COG0020 # Protein_GI_number: 16800420 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Listeria innocua # 26 259 23 252 252 315 63.0 5e-86 MLRFFPQKNKYVEEASQYAFDKEGQIPQHIAIIMDGNGRWAQNRRLPRIAGHKEGMDTVK KITKHASHLGVKVLTLYAFSTENWKRPTDEVNFLMQLPVDFFDTFVPELIKENVKVNVMG YQEFLPSHTQDAVKRAIEQTKDNTGMVLNFALNYGARAELLTAMKQIAAEVSEKTYTADE ITEETIADHLMTGFLPTELRDPELLIRTSGEERISNFLLWQIAYSELFFTKALWPDFSGD TLETAIASFQNRNRRFGGLKETTETEGSDPQ >gi|307679222|gb|GL457025.1| GENE 20 17264 - 18064 945 266 aa, chain + ## HITS:1 COG:SPy1964 KEGG:ns NR:ns ## COG: SPy1964 COG0575 # Protein_GI_number: 15675762 # Func_class: I Lipid transport and metabolism # Function: CDP-diglyceride synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 266 1 264 264 241 52.0 7e-64 MRQRVITAIVALIIFIPIIWYGGFAIEIAAVALAVVGVYELFRMKGLTLLSFEGVLSALG AVFLVIPTIKWLNFLPEMQTNFILFYVTVMLLLGASVISKNTYTIEEAGFPVIVSLYVGM GFQNFISARSAGFEVLLFALFIVWATDIGAYLFGRRFGRHKLMPDVSPNKTIEGALGGIL SAVVVAALFLVFTANKGLFPYPMPVMLVLTVLFSIVGQFGDLVESSIKRHYGVKDSGNIL PGHGGILDRFDSLLFVFPIMHLCGLF >gi|307679222|gb|GL457025.1| GENE 21 18444 - 18533 108 29 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MISWRKTAVYLSGKIMNSSASGQLTSFML >gi|307679222|gb|GL457025.1| GENE 22 18697 - 19347 695 216 aa, chain + ## HITS:1 COG:AF0720 KEGG:ns NR:ns ## COG: AF0720 COG2102 # Protein_GI_number: 11498327 # Func_class: R General function prediction only # Function: Predicted ATPases of PP-loop superfamily # Organism: Archaeoglobus fulgidus # 8 215 12 210 214 113 31.0 2e-25 MKKFCLSYSSGKDCLLAMDRLIQAGNQPVALVTTLSDEINRSWFHGIPISVLEAAAEALD LPLVISHNNETNYTEKVVEALQETQKLGAETVCFGDIDIEQNGAWDRQVALSAGLEPQLP LWQENREVLVKEFLAKGYTAIIKTVSKEAGIPIKFLGEPLNETFITYLKEHQLDICGENG EYHTLVIDGPLFKKRLNYYTSGIYESPYAYSLIIDA >gi|307679222|gb|GL457025.1| GENE 23 19435 - 19662 404 75 aa, chain + ## HITS:1 COG:no KEGG:EF2483 NR:ns ## KEGG: EF2483 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 75 1 75 75 115 100.0 8e-25 MEETVFFNLGNALASKRDQKELIKEAQIAKDTRKIPGKLIIVEDEENGTHILFELADQTE PSAETKEFKVKKVID >gi|307679222|gb|GL457025.1| GENE 24 19810 - 20541 605 243 aa, chain + ## HITS:1 COG:SA0513 KEGG:ns NR:ns ## COG: SA0513 COG0546 # Protein_GI_number: 15926233 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Staphylococcus aureus N315 # 6 205 4 202 227 68 25.0 1e-11 MENRGILFDKDGTCIRFDTLWQAGLKACFETLSMLAPHHSAEIKKILAIQEQRFLQKHLL DEVLYQELYQELAQFEELVEQGISSRWLEQFFYDYLRKNLKKIEPIGDLKQLFLELKRKN YKIGLATSDTLPATMLIMEYLGLTEMFDFIATGDRYLPKPDADMLQAFCQSCQLKPTEVI MVGDSLVDVFMGTCHGKAGIGVLTGNCQSTDFEKFEVAYFRDIHEIPYQELWENTKKKKI LKR >gi|307679222|gb|GL457025.1| GENE 25 20718 - 21173 311 151 aa, chain + ## HITS:1 COG:CAC3531 KEGG:ns NR:ns ## COG: CAC3531 COG1943 # Protein_GI_number: 15896768 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Clostridium acetobutylicum # 4 149 2 147 157 203 65.0 9e-53 MSNDDKSLAHTRWNCKYHLVFTPKYRRKVIYGQLRRDIGKILRKLCEMKEVEIIEAHAMP DHIHMLVRIPPKLSVSGFMGFLKGRSAVIIHERHANLKYNYGNRSFWSKGYYVSTVGLNQ KTIAKYIREQEAEDRVRDSINKREYKDPFRK >gi|307679222|gb|GL457025.1| GENE 26 21299 - 22411 831 370 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315144828|gb|EFT88844.1| ## NR: gi|315144828|gb|EFT88844.1| hypothetical protein HMPREF9495_01334 [Enterococcus faecalis TX2141] # 1 370 1 370 370 686 100.0 0 MKSMCELCDLNPGKIITFDNHGICKHCAEHLELKPKEIKDRTMESIIKRQEEIIKKDQAM QAKGNLCYLCEEETGKYFTSDFYRVGKSCLKKLKVSTWSVDKKSLADLQQMQKLINKQSE IAKANEKNAEVYGNLCALCQDNKGKYLTSDNYQICKKCAGQLGVQGQGYTQTWTLTDLRN VQEDNRLFNPTTTIAGSIEFDEPEKKFRLVGSSKILPVSIIADYKILEKKNTHFTEENVP YDRVSSVYILINLDDLQRPTITISFLKTLSEQTTEFDRQLAIDRARFNAERALSSLDTIV RRIKEKEIPTPIKSDENQPIEPKLSDSQKNSSSAIEDVMAELRNLKLLVDEGILTEEEFQ QKKRQLLQLD >gi|307679222|gb|GL457025.1| GENE 27 22513 - 23064 629 183 aa, chain - ## HITS:1 COG:no KEGG:EF1241 NR:ns ## KEGG: EF1241 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 34 182 22 169 176 150 49.0 2e-35 MKKFSMLGLVLISTLILGACGSGTNNTNKTKKTSSTATATTETKAKEDKGTYKDRTLTVP DGVLKITEFQKGTSFDGKPIFYVLFDLTNNTKEAQDVQMLYSSFVSVSQNTGDTTEDLTY GIVNDSPIKDRIDMLNKKVNPGATVQAAYPYEFADETKPVTFTFRDSMFSMGDPIAVEEI TIK >gi|307679222|gb|GL457025.1| GENE 28 23287 - 24096 854 269 aa, chain - ## HITS:1 COG:L188985 KEGG:ns NR:ns ## COG: L188985 COG1512 # Protein_GI_number: 15673333 # Func_class: R General function prediction only # Function: Beta-propeller domains of methanol dehydrogenase type # Organism: Lactococcus lactis # 21 252 22 260 261 125 36.0 1e-28 MKKRLLPIFFLILLSFGLALPVSAAENSIDDGAQLLTPDQINQLKQEIQPLEEKTKASVF IVTTNNNTYGDEQDYADHYLLNKVGKDQNAILFLIDMDLRKVYISTSGNMIDYMTDARID DTLDKVMDGMSQGNYFAAAQTFVQETQAFVDKGVPGGHYRVDSETGKITRYKVITPLEMV IAFAAALILSLVFLGINISKYQLKFSSYQYPFREKTTLNLTSRTDQLTNSFITTRRIPKN NGGSGGMGGGGSTTHSTGGGTFGGGGRSF >gi|307679222|gb|GL457025.1| GENE 29 24093 - 25238 912 381 aa, chain - ## HITS:1 COG:no KEGG:EF2478 NR:ns ## KEGG: EF2478 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 381 1 381 381 717 99.0 0 METTFTHKCPNCGGPLLFNPKDQKFHCEYCLNIYTEEEVTRYEQQQHEAHLENPSTTTAE ENLTFTAEEESSATQQTETTENETTADAGTMEIFNCPSCGAQIVTDATTAATYCYYCHNP VVLAGRLSGEFLPENVLPFTIEKDEAIEKFLAWTKKKWFIPRDFFSKNQIDKLTGVYFPY WVVDAEVDGQLQATGTSIRIWRVGDIEYTETKRFNVGRSGKLSFKELVKNALSKNVQQKM VEGVQPFLIDQAVPFKSQYLAGFQAEKRDIEYEAIKKHVQQELQDYSESLLRDSASGYTT LTNVRTDISLNQENNHYMLLPIWLVTYRSQEQSKKVYYYAMNGQTGKVSGVLPISYTRLG LATLGIFAGLLALFLLGGYFL >gi|307679222|gb|GL457025.1| GENE 30 25342 - 26574 1222 410 aa, chain - ## HITS:1 COG:L186490 KEGG:ns NR:ns ## COG: L186490 COG4260 # Protein_GI_number: 15673331 # Func_class: S Function unknown # Function: Putative virion core protein (lumpy skin disease virus) # Organism: Lactococcus lactis # 15 405 1 384 389 566 69.0 1e-161 MGLIKAATSSVGGGLADQWLEVIEPDNMGDTTVMTKGVFVRKDDKRGSNRKGTDDVLTDG SVVHVYPNMMMLLVDGGKIIDYTAEEGYYTVKNDSAPSMFNGSLKDAIAETFSRFKFGGV TPQKQQVFYINLQEIKGIKFGTPAPLNYFDNFYNAELFLRAHGNYSIKITDPLLFYTNAI PKNQTQVDINDINEQYLAEFITALQAAINQMSADGQRISYVPSKSVELSKYMQTALDEDW RTNRGMEIVSVAVASISYTDDSTKLINMRNEGAMLSDPGVREGYVQGSLARGMEAAGKNE GGAMSGFMGVGMGMNANGNYFAQASQTNQQQMQEKQNQQNAQGSTDTWTCPQCGTENTGK FCSNCGTPKPTNEKPKLEMKCSECSEIVDLSNGIPKFCPHCGKPFQGVPL >gi|307679222|gb|GL457025.1| GENE 31 26782 - 28824 2317 680 aa, chain + ## HITS:1 COG:lin0461 KEGG:ns NR:ns ## COG: lin0461 COG0768 # Protein_GI_number: 16799537 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Listeria innocua # 1 675 1 676 678 569 48.0 1e-162 MERSNRNKKSSKKPLILGVSALVLIAAAGGGYYAYSQWQAKQELAEAKKTATTFLNVLSK QEFDKLPSVVQEASLKKNGYDTKSVVEKYQAIYSGIQAEGVKASDVQVKKAKDNQYTFTY KLSMSTPLGEMKDLSYQSSIAKKGDTYQIAWKPSLIFPDMSGNDKISIQVDNAKRGEIVD RNGSGLAINKVFDEVGVVPGKLGSGAEKTANIKAFSDKFGVSVDEINQKLSQGWVQADSF VPITVASEPVTELPTGAATKDTESRYYPLGEAAAQLIGYTGTITAEDIEKNPELSSTGVI GKTGLERAFDKELRGQDGGSLVILDDKENVKKALQTKEKKDGQTIKLTIDSGVQQQAFAI FDKRPGSAVITDPQKGDLLATVSSPSYDPNKMANGISQKEYDAYNNNKDLPFTARFATGY APGSTFKTITGAIGLDAGTLKPDEELEINGLKWQKDKSWGGYFATRVKEASPVNLRTALV NSDNIYFAQQTLRMGEDKFRAGLNKFIFGEELDLPIAMTPAQISNEDKFNSEILLADTGY GQGQLLISPIQQATMYSVFQNNGTLVYPKLVLDKETKKKDNIISANAANTIATDLLGSVE DPSGYVYNMYNPNFSLAAKTGTAEIKDKQDTDGKENSFLLTLDRSNNKFLTMIMVENSGE NGSATDISKPLIDYLEATIK >gi|307679222|gb|GL457025.1| GENE 32 28904 - 29659 285 251 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase [Lactobacillus jensenii 269-3] # 55 238 2 185 380 114 39 1e-54 MKRLNCRRKGIRVRILAIDTSNQTLSIAVCENQKILGSYTATVKRNHSLTLMPAIDYLMS QLNLAPTAIDRFVVAEGPGSYTGLRLGVTTAKTLAYTLKKELVGISSLQTLAANCVGQTG LVVPLFDARRKNVYAGAYRFVDGVWQNELPDQHISLRELLEQLKNEPNLFFVGEDVEKFT EEIAQIIPHGEICDVPQWQIPNAAVLAALGSVAEPVENVHGFLPAYLKKVEAEENWLKTH TPNGESYVEKL >gi|307679222|gb|GL457025.1| GENE 33 29631 - 30185 292 184 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|58336726|ref|YP_193311.1| ribosomal protein ala-acetyltransferase [Lactobacillus acidophilus NCFM] # 5 182 1 179 190 117 36 3e-25 MEKAMWKNFNFVTKYFTKRRQRYITKTIAMNQQEFQLREITYQDIKDLLAIEREVYAGEL PWTMSAFMAELGSKAPHLYLLAAINGKTVGFIGCRIQGTDAHITNVAVHTAYQGLGLGRS LIEETRIFAKKNRCETLSLEVRMSNVKAQRLYRKIGFASQTVKKGYYDENNEDALEMIID LKEE >gi|307679222|gb|GL457025.1| GENE 34 30193 - 30657 195 154 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119946836|ref|YP_944516.1| ribosomal-protein-alanine acetyltransferase [Psychromonas ingrahamii 37] # 1 149 9 160 162 79 27 6e-14 MLVTKKEISVANIGEELWRFSNSSYTTGSPWTETQFAEDFAQENSEYLFLVENGQWLGYI AYHFILDEAEISHVVVNGQKQHQGIGCQLMKAFKEYVKSRDITQIFLEVRESNTLAQKLY EKTGFRKVAVRKNYYKEPQENAFVMCAKLRKEAQ >gi|307679222|gb|GL457025.1| GENE 35 30654 - 31700 721 348 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229232313|ref|ZP_04356740.1| (SSU ribosomal protein S18P)-alanine acetyltransferase [Cryptobacterium curtum DSM 15641] # 10 319 518 834 860 282 47 2e-81 MTIFTKERKLLLAVESSCDETSVAVIEDGDKILSNIVASQIKSHQRFGGVVPEVASRHHV EQVTICIEEALTEAKVTPEELSGVAVTYGPGLVGALLIGLSAAKAFAWAHQLPLIPVNHM AGHIYAARFVAPLEFPLMALLVSGGHTELVYMKEDGSFEIVGETRDDAAGEAYDKVGRVL GLPYPSGKEIDTLAHEGTDTYQFPRAMLKEDNYDFSFSGLKSAFINTVHNAEQRGEALST KDLAASFQASVVEVLVAKTIRACQEYPVKQLLIAGGVAANQGLREAMRHAISEQLPAVTL LIPPLKLCGDNAAMIGAAAFIEAEKNHFASYNLNAEPGVSFMTISEEG >gi|307679222|gb|GL457025.1| GENE 36 32020 - 33711 2209 563 aa, chain + ## HITS:1 COG:SPy2151 KEGG:ns NR:ns ## COG: SPy2151 COG0018 # Protein_GI_number: 15675893 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Arginyl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 563 1 563 563 726 62.0 0 MNNKEIVAKALHDVLNEELTMDQIEQLLENPKSVDHGDVAFPAFSLAKIYRKAPQQIAAE LAEKIDGTNFEKIEVVGPYLNFFMNKKAVSQAVIGEVVKEKNNYGNSTFGNNGNVPIDMS SPNIAKPISMGHLRSTVIGNSIAFILEKIGYQPIRINHLGDWGTQFGKLIVAYKKWGSEE AVRQQPINELLRLYVQFHEEAEEKPELEDEARAWFKKLEEGDQEANELWKWFRSESLKEF DKIYSMLEVEFDSYNGEAFYNDKMDEIVTLLEEKHLLTENQGAEIVDLTEYNLNPALIRK SDGATLYITRDLAAALYRKRTYDFAKSLYVVGNEQSNHFKQLKAVLKELGFDWSDDMEHI PFGLITQGGKKLSTRKGKIVLLEEVLNEAVTLAGNQINEKNPDLANREEVAKQVGVGAVI FHDLKNDRLNNFDFVLDEVVRFEGETGPYVQYTHARAMSILRKANFTPDATQRYALNDKD SWEVVKLLQKFPETVMQAAEKYEPSVIAKHSIHLAQAFNKYYAHVRILDEDDQKEARLAL VYAVATVLKEDLRLLGLHAPEEM >gi|307679222|gb|GL457025.1| GENE 37 33852 - 34367 630 171 aa, chain + ## HITS:1 COG:SPy0357 KEGG:ns NR:ns ## COG: SPy0357 COG1418 # Protein_GI_number: 15674508 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Streptococcus pyogenes M1 GAS # 10 162 3 150 166 179 64.0 3e-45 MAPNYMTEKWREDEEYLSYVEDLLATEEVQKLAEYTQHMHSTRLEHSISVSYHSYKLAKR WNGNARATARAGLLHDLFYYDWRTTKFDEGSHAYVHPRIAAKNAEKITELSDLERDIIIK HMWGATIAPPKYKESYIVTFVDKYCAVKEAALPMTTAMKTKWRQYFGQQSI >gi|307679222|gb|GL457025.1| GENE 38 34449 - 34742 323 97 aa, chain - ## HITS:1 COG:no KEGG:EF2469 NR:ns ## KEGG: EF2469 # Name: not_defined # Def: Cro/CI family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 97 11 107 107 171 96.0 7e-42 MEKNLTLEQVGNFVGVGKSTVRKWETGMIENMGRDKIVALSKVLDVSPLEILGIPETEET PFVVPTNIMNVYKQLTTENQEAVYRYAQKKLTEQNYF >gi|307679222|gb|GL457025.1| GENE 39 34949 - 35197 256 82 aa, chain + ## HITS:1 COG:no KEGG:EF2467 NR:ns ## KEGG: EF2467 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 78 1 78 92 117 88.0 2e-25 MESNLIHSKLKLKGKNVEWLASEMTAAGQPISASTIYKKLKGEVVFKASDIKLISKLLDL ESEEIMVIFFNELVSKKTREGC >gi|307679222|gb|GL457025.1| GENE 40 35408 - 36673 1181 421 aa, chain + ## HITS:1 COG:RSc1803 KEGG:ns NR:ns ## COG: RSc1803 COG0038 # Protein_GI_number: 17546522 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Ralstonia solanacearum # 14 400 4 390 431 283 44.0 6e-76 MKKETKQLLSIGGYMAKWLLITAIIGLFMGALSAFFLKSLTYVTDVRLANPWLLFILPIS GVVFTYFYTRFGKNASRGNNLVIEQGNGGEEDIPLRLIPLTLFGTITTHLFGGSVGREGT AVQMGGTIANAVGKVFKLSALERQVIIISGISAGFSSVFGTPLAGTVFGLEVLAIGKVRA EALFPSFFAGLFANFVTESFGVTHTHYPMGKIPNWSVELFVKLFLASICFGLAGWVFSRS IVFLKKTYANWFANVYLRAFLGASIVVLFVLVLNNQRYLGLSLPLLEDAFAGNAQPFDFV GKLFFTVLSLGAGFQGGEVTPLFEIGATLGSSLAPLLHLSIPFLAGLGFIGVFSGATNTP IACFIMGIELFGSEAAVYFFMVCLISFMCSGNSGIYASQQSLYRKGTAEYPLFNALKNRR K >gi|307679222|gb|GL457025.1| GENE 41 36723 - 37001 451 92 aa, chain + ## HITS:1 COG:SP1404 KEGG:ns NR:ns ## COG: SP1404 COG4476 # Protein_GI_number: 15901258 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 2 90 3 91 92 92 55.0 2e-19 MKDYQYPLDLDWTTEEMVIVTNMWTAVEQANETGLPVDKFLTTYQQFKTVVKSIGEEKRL GREFENASGYSLYRTLQQAKKQGSGKLKLGDD >gi|307679222|gb|GL457025.1| GENE 42 37002 - 37784 1041 260 aa, chain + ## HITS:1 COG:BS_yktC KEGG:ns NR:ns ## COG: BS_yktC COG0483 # Protein_GI_number: 16078531 # Func_class: G Carbohydrate transport and metabolism # Function: Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family # Organism: Bacillus subtilis # 1 257 1 262 265 180 37.0 3e-45 MTETQKFVQTIQSWLFEAADVIRMNLESELTVQQKNGRTDLVTNMDEQTQEFLMNKIQTN FPEDQILGEEKGYNTLKSFAGRVWIIDPIDGTMNFVMERENFCIMLAVYEDGIGKLGFIY DVMREELYWGGKGLGVYRNNQLLKAPTMKALADGLWGMNAYMHGKNIHHATEIGQASMGV RISGCAGLEIIAMLKGNHHGYLSNLSPWDYAAGLVLLEEFGFKYSGITGKPLTFAGREYF IAATPETYDEVFTRYLNESE >gi|307679222|gb|GL457025.1| GENE 43 38005 - 39840 2248 611 aa, chain + ## HITS:1 COG:SP0681 KEGG:ns NR:ns ## COG: SP0681 COG1217 # Protein_GI_number: 15900582 # Func_class: T Signal transduction mechanisms # Function: Predicted membrane GTPase involved in stress response # Organism: Streptococcus pneumoniae TIGR4 # 2 611 3 613 613 1019 86.0 0 MKYRDDIRNVAIIAHVDHGKTTLVDELLKQSDTLDGHTQLQERAMDSNALESERGITILA KNTAVDYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALE QKVTPIVVVNKIDKPSARPEHVVDEVLELFIELGADDDQLDFPVVYASALNGTSSESDDP ADQEPTMAPIFDKIIEHVPAPVDNSDEPLQFQVSLLDYNDYVGRIGIGRVFRGTMKVGDQ VALMKLDGSVKNFRVTKILGFFGLQRVEIDEAKAGDLIAVSGMEDIFVGETVVDVHNQEA LPILHIDEPTLQMTFLVNNSPFAGREGKYITARKIEERLMAELQTDVSLRVDPIGPDSWT VSGRGELHLSILIENMRREGYELQVSRPEVIEREIDGVKCEPFERVQIDTPEEYMGSVIE SLSLRKGEMQDMINAGNGQMRLIFLAPARGLIGYSTEFLSMTRGYGIMNHTFDQYLPMIQ GTIGGRHQGALVSIDTGKATTYSIMSIEERGTVFVEPTTEVYEGMIVGENNRDNDLTVNI TKAKQMTNVRSATKDQTSVIKKPKKLTLEESLEFLNEDEYCEVTPESIRLRKQILNKNER EKASKKKKKAE >gi|307679222|gb|GL457025.1| GENE 44 40158 - 41927 2091 589 aa, chain + ## HITS:1 COG:lin2900 KEGG:ns NR:ns ## COG: lin2900 COG0514 # Protein_GI_number: 16801959 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA helicase # Organism: Listeria innocua # 5 583 6 586 590 708 58.0 0 MSALQELLKDTFGYDDFRPGQETIIRHVLRQENVLGIMPTGGGKSICYQLPALLLDNLTL VISPLISLMKDQVDALNLMGIPATYINSTISYQEMNHRIQLAVNKEIKLLYVAPERLESY DFQQMLTHVPIDLLAVDEAHCISQWGHDFRPSYLRLAEIIDQFQQQPTVIALTATATPQV AEDIVKQLRIPSENEIKTGFARENLSFQVVKDQNRDVFLLEYLKMNTGQSGIIYASTRKE VERIYHLLESKKIAAGMYHGGMSEQLRSENQEAFLYDQVQVMVATNAFGMGINKSNVRFV IHAQVPGNIESYYQEAGRAGRDGLPSDAVLMFAPQDLQIQQYFIEQSEMTIDYKQKEYLK LREMSQYANAQMCLQKYILRYFGEEGTDCGRCSNCLDNRELVDITVDAQKVLSCVKRMGE RFGKGLVGKVLTGSKDQKIDQWHFDRLPTYGLMKGRTQKEVTQLIDYLTAERYLIPSDGQ FPLLSVSTEGVQVLLRERKVFRKEDQKVRKVAVDDALFERLRELRMDMAQEAGVPPYVVF SDSTLKEMCEKLPQTTIQLLQIKGVGQNKLDKYGTAFLEVIKEYQETKK >gi|307679222|gb|GL457025.1| GENE 45 42154 - 42459 403 101 aa, chain + ## HITS:1 COG:lin1058 KEGG:ns NR:ns ## COG: lin1058 COG4838 # Protein_GI_number: 16800127 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 10 84 12 86 93 77 53.0 6e-15 MDEGISKKFAIQLLEDDAERIKMLIRNQKNSLCISQCKAFEEVVDTQMYGFSRQVTYATR LGILTNDEGHRLLSDLERELNQLYTDVYEETQEKNEIGKEG >gi|307679222|gb|GL457025.1| GENE 46 42463 - 43671 1408 402 aa, chain + ## HITS:1 COG:SP1067 KEGG:ns NR:ns ## COG: SP1067 COG0772 # Protein_GI_number: 15900936 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 4 393 2 398 409 342 48.0 6e-94 MPNKVKKRHLLDYSIFIPYLILSIVGLIMVYSSTSALQVMKGFSPTSFVINQVAFWVVGL VAMFFIYKMKTSVFQNRSFIMFAIAVITVMVLAVRIPGIGKEINGARGWIEIGGFSMQPA EYLKIMVVWYLSYILARRQKTINGGMDQFKQAAGRPLMLVFVLIALVAIQPDFGNAAILT LITIVMVLASGINYMYTYLVGGLGILGSITAIQLLIMSKGKIFPARYQYIYNRFAVFKNP FLDERNLGHQLANSYYAISNGGWFGKGLGNSVQKKGFLPEAHTDFIFAITLEELGIIGGL AILGLLMFMIARIILVGVRSKKPFNSLMCIGIGTMLLIQVFINVGGITGIIPLTGITFPF LSQGGNSLLIISIAVAFVLNISADETRQKLENEYYLSLEQNQ >gi|307679222|gb|GL457025.1| GENE 47 43704 - 47132 4077 1142 aa, chain + ## HITS:1 COG:L63652 KEGG:ns NR:ns ## COG: L63652 COG1038 # Protein_GI_number: 15672651 # Func_class: C Energy production and conversion # Function: Pyruvate carboxylase # Organism: Lactococcus lactis # 1 1139 1 1136 1137 1656 70.0 0 MKKVLVANRGEIAIRIFRACTELDIQTVAIYAAEDEYSVHRFKADEAYLVGKGKKPIEAY LDIENIIQIAKKSGADAIHPGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAK EAAVAAGIASIPGSDGPVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREG YERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKVVE VAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLVEGDQFYFIEVNPRVQVEHTITE MITDIDIVISQLQIAQGLDLHKDMHLPKQNELTLKGAAIQCRITTEDPLNQFMPDTGKID TYRSPGGFGVRLDVGNAYSGYAVTPYFDSLLVKVCTHGFSFEQAISKMQRCLKEFRIRGV KTNIPFLQNVVSYPAFQSGEAKTTFIDNTPELFEFPRMRDRGNKTMKYIGEVTVNGFPGI ERTEKKYFEAPRVPTDIEVPEKVITAKNILDAQGATAVIDWVKNQESVLMTDTTFRDAHQ SLLATRVRTQDFKAIAGLTDAALPELFSSEMWGGATFDVAYRFLTEDPWQRLRKIRQLMP NTLLQMLFRGSNAVGYQNYPDNVIEEFIKESARQGVDVFRIFDSLNWIPQMEKSIQVVRD TGKIAEAAICYTGDINDPARAKYNVQYYLDMAKELENLGAQIIAIKDMAGLLKPQAAYRL ISELKAATDLPIHLHTHDTSGNGIITYSAATKAGVDIVDVAMSAMSGATSQPSMNSLYYA LVNGERTPTINIDNAQKINHYWEDVRMYYQPFENGLNAPQTEVYMHEMPGGQYSNLQQQA KAVGLGHRWDEIKKVYHTVNLMFGDIVKVTPSSKVVGDMALFMVQNNLTEQDVYARGEEL SFPESVVTFFQGDLGQPVGGFPKELQRIILKGRPAFTERPGDLAAPVDFAKVQEELAEKI GYQPKLEEVLSYLMYPQVFLEYRQKYETFGDITLLDTPTFFNGIRQGETLEVQIERGKTL IIRLDEIGEPDIDGNRVLFFNLNGQRREVLVKDASIKSAVQVKQKAEPTNKEQIGATMSG SVLQVLVKRGDKVEKGQPLLITEAMKMETTIEARFAGTVDHIYVEEGEAISSGDLLLEVK EK >gi|307679222|gb|GL457025.1| GENE 48 47149 - 48273 1019 374 aa, chain + ## HITS:1 COG:lin2162 KEGG:ns NR:ns ## COG: lin2162 COG2340 # Protein_GI_number: 16801228 # Func_class: S Function unknown # Function: Uncharacterized protein with SCP/PR1 domains # Organism: Listeria innocua # 1 236 1 246 351 90 26.0 6e-18 MKRFWAFTAVFLTVLLIGYLEPVFFPAEKPTETAQSGRLSSAHTAVPHEELPASGYAAYI GKDVETFIRQFGNPKEKIKTGRTYELWTFGLTMNDYLEVNVRENKVIAIKAFNNDKMIEP FKIDMKLADLSDLMTIYSNFAFNFHHEAYDVELMEEDMNYRPLVAFDNGSFAVLFFNQRT GGLMAVNYVNKETLLTEMPYQLNEGSPLPVDITQSMTFDPVQSNQAIYVMNLVKQQENQA AFSVSTQSQKDAQTLYQTMANHTPTILSANRQAELLQTREEHTAIHPFHLTKDEFSLLVK TSKLSLREPAGIFQEPVYDSTFTILSWFSDPQYDSYFAESETTELGVAFSNEGVLVLLEK RPENRQITESSEKL >gi|307679222|gb|GL457025.1| GENE 49 48270 - 48704 222 144 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764796|ref|ZP_02171849.1| ribosomal protein S17 [Bacillus selenitireducens MLS10] # 7 141 12 143 146 90 35 4e-17 MIVTEHLFAIEDQTECLISALLESDAVQNYKETKKAMYASAEVAQLQKAFLEAKSAFERV EAYGIHAPDFREKQRALRKAKRALDLNEIVANYRFAETNVQTLLDTIGLKIAQLISEDIK VDAGNPFFERGKKHSGCGGSCHAS >gi|307679222|gb|GL457025.1| GENE 50 48694 - 49044 494 116 aa, chain + ## HITS:1 COG:BH2594 KEGG:ns NR:ns ## COG: BH2594 COG4471 # Protein_GI_number: 15615157 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 14 91 6 83 92 70 46.0 1e-12 MQAKEEKEFTLQERRCLIVWVYTLKPLKQLRRYGLIHYVSRKMKYVVIYMNEENIESNME KINQLHFVRSVDKSYRPDVEMNFAEKIGTKAAYQEQEDDGYVVEELSTEIRLAENV >gi|307679222|gb|GL457025.1| GENE 51 49143 - 49697 757 184 aa, chain + ## HITS:1 COG:L22498 KEGG:ns NR:ns ## COG: L22498 COG0742 # Protein_GI_number: 15674145 # Func_class: L Replication, recombination and repair # Function: N6-adenine-specific methylase # Organism: Lactococcus lactis # 1 180 10 186 188 214 61.0 5e-56 MRVISGEYGGRRLKALDGDNTRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAV SRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD PPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKTVKLPETIGTLEKTRETVYGITQVTIY RQEA >gi|307679222|gb|GL457025.1| GENE 52 49699 - 50190 334 163 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 [Bacillus selenitireducens MLS10] # 2 158 3 158 164 133 43 5e-30 MRKIALFPGSFDPMTNGHLNLIERSAKLFDEVIIGVFINTSKQTLFTPEEKKYLIEEATK EMPNVRVIMQETQLTVESAKSLGANFLIRGIRNVKDYEYEKDIAKMNQHLAPEIETVFLL AEEPYAHVSSSLLKEVLRFGGDVSDYLPPNIYHALKQKKNDWS >gi|307679222|gb|GL457025.1| GENE 53 50195 - 51247 471 350 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 [Bacillus selenitireducens MLS10] # 1 346 1 343 350 186 33 6e-46 MNKKTEKFSFKSLIPMVLALLLIGLFIVPIPYYIEGPGTTENLKEFVTVDGKKDTQSGAF YLTTVGIRSATIFSAIKANFSDFQEVMSKKELMGDSSNSEYNRIQQYYMDSSKNAAIEQA LKLAKVPYEMKFKGVYVLAMEDNSSFKGKIEVGDTVTGVDGKSFKSSEELMNYIKAQKVN QKVTVQFIQDGKAKEATGKLIELPTDKKAGIGIGLTDHTEIDSSIPVSIEAGDIGGPSAG LMFTLQTYEQLSHKDLRKGHEIAGTGTMNSQGIVGRIGGIDKKVVTASENGAEIFFAPDD EITSEMKKVEPKIKSNYQEAQEAAKKIGTKMKIVPVKTVQDALNYLEKLK >gi|307679222|gb|GL457025.1| GENE 54 51343 - 51987 727 214 aa, chain + ## HITS:1 COG:lin1519 KEGG:ns NR:ns ## COG: lin1519 COG1555 # Protein_GI_number: 16800587 # Func_class: L Replication, recombination and repair # Function: DNA uptake protein and related DNA-binding proteins # Organism: Listeria innocua # 67 212 57 199 200 132 47.0 3e-31 MDWLKQLPKKWLLLGSGASIVILITLLVGIYLMVNKEPRVDTTMWEETSLTTMAEFATDA TKERAETMIYVDIKGAVKVPGIYQLKNQQRIWDALALAGGVSEEADTTQVNYAQKVKDQM IIYVPKKGEPVPQSLETLQESAPAQQNQEEKINLNRATEAELQTISGIGAKKAQEIIRFR DEQGPFKTVEELKNVPGIGEKTVERLKDMLTVTG >gi|307679222|gb|GL457025.1| GENE 55 52110 - 52613 435 167 aa, chain + ## HITS:1 COG:BH1334 KEGG:ns NR:ns ## COG: BH1334 COG2131 # Protein_GI_number: 15613897 # Func_class: F Nucleotide transport and metabolism # Function: Deoxycytidylate deaminase # Organism: Bacillus halodurans # 1 141 1 141 188 235 75.0 2e-62 MERIPWDQYFMGQSVLLSLRSTCTRLTVGATIVRDKRIIAGGYNGSVSGGTHCIDEGCYV VDNHCVRTIHAEMNAILQCAKFGVPTEGAEIYVTHFPCLQCTKMILQAGIKKIYYLKDYR NDAYALNLIEQVGATVEKVTLVPKYFAELQWGEEFATLEDNPSSAEE >gi|307679222|gb|GL457025.1| GENE 56 52755 - 52823 67 22 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQFFNSRGHIDFPVVKASLFVA >gi|307679222|gb|GL457025.1| GENE 57 52936 - 53235 176 99 aa, chain + ## HITS:1 COG:no KEGG:EF2447 NR:ns ## KEGG: EF2447 # Name: not_defined # Def: DNA internalization-related competence protein ComEC/Rec2 # Organism: E.faecalis # Pathway: not_defined # 1 69 122 190 779 135 97.0 6e-31 MAFYQLKSVKEKQQWQQLTTTIQATAVGILDSPQGQTNKNSFNYQLFLKNQGIEAILFIE EIGQPRPFFLGGLKKSLAAGGNGRWYIFRKILLRLVQCI >gi|307679222|gb|GL457025.1| GENE 58 53187 - 54911 722 574 aa, chain + ## HITS:1 COG:L0317_2 KEGG:ns NR:ns ## COG: L0317_2 COG2333 # Protein_GI_number: 15673754 # Func_class: R General function prediction only # Function: Predicted hydrolase (metallo-beta-lactamase superfamily) # Organism: Lactococcus lactis # 306 558 23 276 282 221 44.0 3e-57 MVHIQKNFAETSAMYMNALLLGFRNEEFAEISDKFSALGILHLFSLSGMHVSFFLRLFRL LMLRIARRTQESYFLWQCGFSLIYAGLTGFSVSVMRALLQTNLNTFNRRFNWQVPALDCW SLTLLVHLIVQPTLFFSVGGQFSYLLSFVLLFLEQTLVGYSSPFIKNCLGSFLLAVASLP ILVQSFYEWPLLGSFLTFLLLPIFERFLLPLLTLSFFLVIIMPARYLAVLLEPLFLTMNG LFEWVLVHLNPKLTIGYLNSWIQISLLLLIGLSMIYLADKSKKIFFSIGLLIVLINSKYL SPIGIVAMIDVGQGDSLFIQAPFHRKNTLIDTGGRLSFDKEAWRQRKNSRSGAEYSVIPF LKSQGVKRLDEVIITHAHEDHFGDLLAIAQKVPISVLYFPKGAAEANFSFRQVLKQLQKS GTDCRPILAPKRINGPVSFQILSPNKSSIGGNNDSIVFSTQLGGRHFLFTGDLEAEGEEQ VLARYPQLKIDILKVGHHGSKTSSTKRFIKQLNPREALISAGLNNRFKHPHQETLATLEE QKINYYRTDLQGMIYYQWLPWQGLSKAKFVKEQD >gi|307679222|gb|GL457025.1| GENE 59 54969 - 55997 1251 342 aa, chain + ## HITS:1 COG:BS_yqeN KEGG:ns NR:ns ## COG: BS_yqeN COG1466 # Protein_GI_number: 16079610 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, delta subunit # Organism: Bacillus subtilis # 8 326 7 325 347 243 43.0 5e-64 MELQKALKEVREQKIAPVYLLIGTELYLTELFKTTLMKELLTEEDDQFNFFSFDIEETPL SAAIAEAETIPFFGDYRLVFVENPYFLTAERKTNGVEHDVNLLLNYLESPSPTTVLVFMA SYEKLDERKKVTKALKKNATVVDVNPMDEKAIRQYISQTIESEGYTIRSDAFDLLLQLTD LNLSKIMGELQKLYLYALETKTITRGAVQELVPKSLEHNVFDLTNEVLSGNSEKAVQLYE DLLLQGEETIKLNAILLNQIRLFLQTKILAKMGYQQANIADTLKVHPYRVKLALQQVRRF ELSRLERLYDELVENDYRMKTGQMDKELLFQLFILKLTAQAK >gi|307679222|gb|GL457025.1| GENE 60 56049 - 56990 1220 313 aa, chain - ## HITS:1 COG:L157055 KEGG:ns NR:ns ## COG: L157055 COG1893 # Protein_GI_number: 15673305 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate reductase # Organism: Lactococcus lactis # 1 313 1 312 312 399 61.0 1e-111 MKIAIAGAGAMGSRLEIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVAKLPIF SPEEIDHQNEQVDLIIALTKAQQLDAMFKAIQPMITEKTYVLCLLNGLGHEDVLEKYVPK ENILVGITMWTAGLEGPGRVKLLGDGEIELENIDPSGKEFALEVVDVFQKAGLNPSYSSN VRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLISEFAAVAEKEAIHLDQA EVYTHIAQTYDPNGIGLHYPSMYQDLIKNHRLTEIDYINGAVWRKGQKYNVATPFCAMLT QLVHGKEELLGAK >gi|307679222|gb|GL457025.1| GENE 61 57180 - 57716 413 178 aa, chain + ## HITS:1 COG:lin2060 KEGG:ns NR:ns ## COG: lin2060 COG1607 # Protein_GI_number: 16801126 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA hydrolase # Organism: Listeria innocua # 3 173 5 172 172 167 50.0 7e-42 MTKEKFCRESRVIQTHRVFPFDLNPFGALFGGKLMSLIDDAASISVSRHCRRGAVTASLD NLNFLKPLKENHSVCVETFVSGVHHKSMEVFVKVVGEDLTTGERYLAATCFTTFVAIPSH MNPESDFQLAAVVPETAEEKLICSNYETRRQQRLALREETKLFSQHLTTDLPWIDSPL >gi|307679222|gb|GL457025.1| GENE 62 57803 - 58117 509 104 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227519840|ref|ZP_03949889.1| ribosomal protein S20 [Enterococcus faecalis TX0104] # 1 104 1 104 104 200 100 2e-50 MITVELHWLTSVKPKSSEVKQMPNIESAIKRVRTSANANAKNSSQTNAMRTAIKKFEEAV AAGADNVDALYNEAVKAVDMAATKGLIHKNKANRDKIRLSKLAK >gi|307679222|gb|GL457025.1| GENE 63 58286 - 59299 969 337 aa, chain + ## HITS:1 COG:SA0619 KEGG:ns NR:ns ## COG: SA0619 COG0306 # Protein_GI_number: 15926341 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate/sulphate permeases # Organism: Staphylococcus aureus N315 # 17 326 20 324 335 194 38.0 2e-49 MSIALLVTITLVMGVIFVNGWTDAPNAIATAVSTRVLKPNVAIWMAVVMNFLGALVMTFF NAQVAETISNIVSFDANGNASQVALAASLFSIVVWAVAAWYFGIPTSESHALIAGLTGSA MALGGLGAVNGSEWIKVLVGLVVSTVMGFGGGYLIAKLVVKAFSAVPRRKANKFFTVGQA FGAGANAFLHGAQDGQKFMGVFMLVLFYNNLVEKTGGGFVIPLWVMVLCSITMGIGTSVG GMRIIKSVGMDMVKLERYQDFTADLSTAICLFLASAFGIPVSTTHTKTTAIMGVGASKRI SSVDWRIVKEMLIAWILTFPGCGLIAYVMSKLFIAIF >gi|307679222|gb|GL457025.1| GENE 64 59312 - 59935 814 207 aa, chain + ## HITS:1 COG:CAC3094 KEGG:ns NR:ns ## COG: CAC3094 COG1392 # Protein_GI_number: 15896345 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate transport regulator (distant homolog of PhoU) # Organism: Clostridium acetobutylicum # 5 206 10 209 210 99 34.0 6e-21 MARKKQFDYFGELNQLATNAYEAAKVLQEIVDNYSLENLVKKSEVVHQLEKENDEIVRKI LNELYISFITPIDREDIVDITDHLDNIIDSINSLSYLLDHLVVEAMIAPALELTAYIVKA TEGVKSATKEFAKFKNSKTLVSLIDEVNTIESQGDKLYSSAMKDLMTNEKDLLKVIKWKD VYDQLERTINDCESAVNIIVGIVIKNT >gi|307679222|gb|GL457025.1| GENE 65 59955 - 60740 864 261 aa, chain + ## HITS:1 COG:lin0339 KEGG:ns NR:ns ## COG: lin0339 COG3394 # Protein_GI_number: 16799416 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 261 1 261 261 405 71.0 1e-113 MVKVIIDADDFGMSEAINHGIIKSYVDGLTTSTLLMPNLPTAEHAVALAKNYPGLFVGQH TNFLLGKPCADPCMIPSLVDEQGNFHRSSYYRQQKQVTFVYEEVRLETIAQLTRFKELTG HYPEHFDCHSIGDEVVDQVFLELAEEYGLHTTLKYSGEKEYPPQQGYFQVTHLLESGALS YIHEGVSVENFLEDDFGLLRMPESAIAEMHFDVGYLDQFVLDNSSYTTLRCKELATICDP RVRQWFEEQGIERITFGDLKK >gi|307679222|gb|GL457025.1| GENE 66 60779 - 61609 886 276 aa, chain - ## HITS:1 COG:L58643 KEGG:ns NR:ns ## COG: L58643 COG1968 # Protein_GI_number: 15674174 # Func_class: V Defense mechanisms # Function: Uncharacterized bacitracin resistance protein # Organism: Lactococcus lactis # 8 275 5 279 284 298 60.0 8e-81 MLFANLWKAIILGIIEGITEWLPISSTGHLILVDEFIKLDLSKDFMEMFNVVIQLGAIMA VVILYFHKLNPFSPKKNGEEKKDTWILWSKVLVACLPAAVIGLKFDDYLDAHFYNFLTVS IMLIVYGIAFIIIEKRNKNVAPKCTNLKDFTYKAALIVGAFQVLALIPGTSRSGATILGA ILIGASRFVATEFSFFLGIPVMFGASFLKIFKFLAKGNTFGSEEIIILLTGSIVAFVVSI IAIKFLLNYLKKNDFTVFGWYRVILGAILIGYWLFS >gi|307679222|gb|GL457025.1| GENE 67 61791 - 62285 709 164 aa, chain + ## HITS:1 COG:SP0758_3 KEGG:ns NR:ns ## COG: SP0758_3 COG2190 # Protein_GI_number: 15900652 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIA components # Organism: Streptococcus pneumoniae TIGR4 # 17 159 5 147 151 136 51.0 1e-32 MFGFLKKKNEVVENNTMYAVANGTVIPISEVNDPVFSQKMMGDGYAVVPENGEIYAPIEG EVLSVFQTKHAIGLKMTNGLEILLHMGIDTVELNGAPFTIKVKEGDQVTADTVVAIANLE AIKAAGKGTEMVVIITNMDKVAQFSLEKTGVVTAGTPVGSATAN >gi|307679222|gb|GL457025.1| GENE 68 62485 - 63594 1073 369 aa, chain + ## HITS:1 COG:L143292 KEGG:ns NR:ns ## COG: L143292 COG3589 # Protein_GI_number: 15673111 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 357 1 349 353 327 47.0 2e-89 MYGISVFLGEEITNDTIIYIKKMKALGFDGIFTSLHIPEDDTSLYRQRLTDLGAIAKAEK MKIMVDISGEALKRAGFSFDELEPLIELGVTGLRMDYGITIEQMAHASHKIDIGLNASTI TLEEVAELKAHQADFSRLEAWHNYYPRPETGIGTTFFNEKNRWLKELGLQVFTFVPGDGQ TRGPIFAGLPTLEKHRGQNPFAAAVGLMADPYVDAVYIGDPKISERTMAQFGYYHQTNQF LLEVAPSKSRYLKRILGTHTNRLDAARDVLRSELSRTSEMFRKDEIATIESEQTEARPVG TVTIDNEKYGRYMGEIQVTLVDLPKDEKVNTITQIIEKDQTILPLIKAGNQFTLVTEGTI ENEFRKLNN >gi|307679222|gb|GL457025.1| GENE 69 63569 - 64459 1235 296 aa, chain + ## HITS:1 COG:L144334 KEGG:ns NR:ns ## COG: L144334 COG2103 # Protein_GI_number: 15673112 # Func_class: R General function prediction only # Function: Predicted sugar phosphate isomerase # Organism: Lactococcus lactis # 1 296 2 297 297 408 74.0 1e-114 MNLENLTTERRNENTMGLDEMSVKEALQKMNQEDQKVAMAVGQELAAIEPVVEAIIKSFN QGGRLIYMGAGTSGRLGVLDAAECVPTFGVEPEMVQGLIAGGQKAMTVAVEGAEDSKELG RQDLVDLKLSANDIVVGIAASGRTPYVIGGLEYATTVGAATATVACNKNAEISKYAQMPI EVDAGPEFLTGSTRLKSGTAQKLILNMLSTISMIGIGKVYNNLMVDVKPTNEKLVERSKR IIMEATGCSYEVAELKFVEAEENVKLAIVMILTDSTKEEATQKLIDGNQFIKNTLN >gi|307679222|gb|GL457025.1| GENE 70 64482 - 65936 2012 484 aa, chain + ## HITS:1 COG:L145238_2 KEGG:ns NR:ns ## COG: L145238_2 COG1263 # Protein_GI_number: 15673113 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Lactococcus lactis # 117 463 1 348 348 430 72.0 1e-120 MAEERIKRIADGIYKEVGGQENVDKVIHCMTRVRMDIRDYDKVDIEGLKKIDGVMGVVED DTLQVVVGPGTVNKVAQEMVDQAGVKLGEPFNHGTATDDSAGKSGKDLVEEKAAQMKAQQ KAKQNNTSPFKKVLKAISSIFVPMIPAFVGAGIIGGIAAVMSNLVVAGDISASWQQYIDV LNIIKNGIFAYLALYTGINSASVFGATPALGGVIGAVTMLTGMNPDAPISNIFTGGTLSA GQGGIIGVIFAVWLLSLLEKQLHKIVPESIDIIVTPTISLLVIGLATIFLIMPVAGAISN GLVGIINVVLEKGGMVAGFTLGLTFLPMVMFGLHQILTPIHIEMINQTGMTLLLPILAMA GAGQVGAALALWIRCKSDKKLVEMIKGALPVGILGIGEPLIYGVTLPLGRPFITACIGGG IGGAVIGAFGNVGAIAIGPSGVALIPLIANNQWLAYVLGLLAAYAGGFVATLFFGIPKDM QTTK >gi|307679222|gb|GL457025.1| GENE 71 66023 - 66871 1027 282 aa, chain + ## HITS:1 COG:L147291 KEGG:ns NR:ns ## COG: L147291 COG1737 # Protein_GI_number: 15673115 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 4 282 2 282 283 200 41.0 3e-51 MQQNIVLSIQDRLQQLPKSERKIAEYILKNTETVISMNAQELAKQAGSSPAAIIRFCHSM DVNGFTELKLLLSANLGQMKQQMYTEVTKGESTADIKQKLQARFVHVVERSGQTLEDVAV NEAVDLLEKTEVIFVYGLGASSLVAQDIYQKFTRLGRTVFTTLDHHLFASMLGSTEKPSV FIVISNSGTNKEASTLADLAKQQGIPIISITQDEKSVIGEKSDIVLQTSSGEDVPLRSAA TVSLVAQLYVVDVLFFAYAAKNYKETLEKIQISRKNVERLKE >gi|307679222|gb|GL457025.1| GENE 72 66921 - 67631 946 236 aa, chain - ## HITS:1 COG:SPy1766 KEGG:ns NR:ns ## COG: SPy1766 COG0406 # Protein_GI_number: 15675611 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Streptococcus pyogenes M1 GAS # 5 233 4 231 235 257 57.0 1e-68 MTEATTLYIIRHGKTMFNTIGRTQGWSDTPLTKQGEEGIYHLGLGLRDIDFKEAYSSDSG RAMQTAQIILQEHQNHQKIPYLTDKRIREWCFGSLDGGYDGELWGVVPRILAFKSYEDMM TTKITYRELANAIIEADTADWAEPYEVIRDRVWSGFEDIAHHREKNGGGKVMVVSHGLTI SFLLSLIDASLPMQMALENGSVTTLTYEKGTFTIQGINDISYIEKGKKIAEKRCLL >gi|307679222|gb|GL457025.1| GENE 73 67672 - 68298 740 208 aa, chain - ## HITS:1 COG:lin2270 KEGG:ns NR:ns ## COG: lin2270 COG0491 # Protein_GI_number: 16801334 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Listeria innocua # 1 208 1 205 205 283 66.0 2e-76 MIQIEQIRTGVIQENCYLVYNEEALLIIDPGAEGAKLIQEIIRLGKKPAAILLTHTHYDH IGAVEELRHHYQIPVYVSPLEQAWLSNPILNLSGLGRHDDIANIIVQPAEHEFKLTDYEI GGMKFSVVPTPGHSIGSVSFVFDDFVVVGDALFKGSIGRTDLHTGDMQQLLHSITTYLFT LPEEFPVYPGHGDATTIQHEKATNPFFN >gi|307679222|gb|GL457025.1| GENE 74 68518 - 69903 1631 461 aa, chain + ## HITS:1 COG:SPCC1672.03c KEGG:ns NR:ns ## COG: SPCC1672.03c COG0402 # Protein_GI_number: 19075374 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Schizosaccharomyces pombe # 54 461 58 463 527 265 36.0 2e-70 MFHFVIKGTGFSSKNLQEIKVYEETLFCIDEAGVIQEIIEPDAEAYETVLAEQKEAQRFQ ELPQDSYLLPGFVDLHVHAPQWAQSGTALDIPLHEWLNTYTFPLESKFADLTFAQQVYDE LVTQLLANGTTTALYFATIHYEASRCLAEICAEKGQRGLIGKVVMDDLNENPEYYRDQTT EQALEETERFIQEIQTLAQQTKQGVYPVVTPRFIPSCTEEALKELGELAAKYQVHVQSHC SESDWEHQFVQERFGKNDAQALNDFGLLTEKAVMAHAGFLEEADMNLFHETGTAVAHCPI SNAYFGNAVTPIAKLVHQHQVEVGLGSDLSGGFSPSLFDNLKQAVISSRMLEDGVDATKK PEVRGVKTARITVNEAFYLATAGGGQALSLPIGKLEKGYAWDVQIINTSLSQARIPKNPG ESLLDVFQKILYLARPENIREVWVQGEKVHDKNLMSATKGV >gi|307679222|gb|GL457025.1| GENE 75 69907 - 71238 358 443 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 27 438 19 419 447 142 28 7e-33 MSEKKQNNLHLTVGPEDSVSFGQATMLGIQHVLAMDVYVVPVIIASIIGISTAQTSSLIQ ATFIAAGLATIIQSHFCMRLPVAQGPSFIPIGAIAGIYFANNQQGNGWGAVLGASLVGAI VVIILGFTGIFNRLITKFVPPIVGGTIIFVVGLSLMPVALSDNIYHAKGELGQNILLAFI AAGTLIFFALLGSALKKGRIFRVSSVILALLFGSIAAQLLGVLDLSAVSEAAWFSLPQLP LVNFSFQFDWSAIATMLVIYLVLMAETTGTWFAVSHVVAEPLTEEKINRGVIGEGLGCLV SSFIGGTPVTSYSTNAGIISITGVASRKVFVAAGAWFVLFGLSGKLSTLISAIPAPVIGG VFVVVCGIISVSGMKVMSDVTIHEKEMYVIAVPIIMTLALTLLPKEFLETLPQFLQYLFS SPVATASIVAILLQAILPNVQEG >gi|307679222|gb|GL457025.1| GENE 76 71380 - 72357 1238 325 aa, chain + ## HITS:1 COG:jhp0790 KEGG:ns NR:ns ## COG: jhp0790 COG0516 # Protein_GI_number: 15611857 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Helicobacter pylori J99 # 1 325 1 325 325 580 86.0 1e-165 MKVFDYEDVQLIPNKCIVNSRSECDTTVTLGKHSFKMPVVPANMQTIIDETIAETLAENG YFYIMHRFDEEARVPFIKKMQQKGLITSISVGVKEGEYAFVETLAREGLVPDYVTIDIAH GHSNAVINMIQHLKKFLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKT GFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSVRFGATMVMIGSLFAGHEESPG ETKVEDGVVYKEYFGSASEFQKGEKKNVEGKKIWLRHKGKLADTLVEMQQDLQSSISYAG GRDLEAIRKVDYVIVKNSIFNGDTI >gi|307679222|gb|GL457025.1| GENE 77 72519 - 72851 214 110 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|18309686|ref|NP_561620.1| 30S ribosomal protein [Clostridium perfringens str. 13] # 2 105 3 107 110 87 42 4e-16 MIGSDAIRGYNDTFILSILQSGASYGYAISKRIREISKEQYSIKETTLYSAFTRLEKNGY IESFPGEVTHGKKRTYYQITHAGERYLEEKLLEWEVTKDVVEAFVKEMGK >gi|307679222|gb|GL457025.1| GENE 78 72848 - 73876 963 342 aa, chain + ## HITS:1 COG:no KEGG:EF2427 NR:ns ## KEGG: EF2427 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 342 1 342 342 650 98.0 0 MKIIEEFIDSLFSGVVETSETKQLKADLLANAEDRYEDLLSQGKSENEAIGTIISEFGTI DELMEELNLENKQVDETNDSMNGLPEISVEEGLDYLAVQRKGAIQIGLGVVAIMVGVGLL VGMRGVLSNGLGLVCLFIGVAIGVPLFIVAGNRFVAMDKQLGQRLIPIKLKKEVAQREQS FQRSFIFCMAAGVVFCILGLIPVVVFSSGLHLMMRRSMHQMMGGQYYNGTMGISWLFFLV SVGVFLFIFGGVIKGSFNKLLNETYFYSEHVGHPDFAPQQTKTEEGPVGNPVGAIIASVY WPLVVALYLFISFVLGDWRFSWLIFMFAGIFYNTIQAFLHKH >gi|307679222|gb|GL457025.1| GENE 79 74011 - 75462 1568 483 aa, chain + ## HITS:1 COG:lin2204 KEGG:ns NR:ns ## COG: lin2204 COG1167 # Protein_GI_number: 16801269 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Listeria innocua # 1 458 1 461 466 404 46.0 1e-112 MWQLKKEQNVPIYRSIMEMIVQKIQTGELLPGEKIPSERKLAEYLSVNRSTVVHALDELV DLGWIVRKRGSGTIVNEGKWGVMMTPRTDWHRYLEQNVFKQVHPLVAEIELRAKQNLPTD LDMYTGELPLDLIPSFDFPALNWKQFLKEEAQDELGYLPLRKEIQAITATEYQLHLPSES LLLTSGAQQALFLVLQVLLRQGDSVAVEDPSFFYALPIFQAAGVRLFGVPMTEEGIDLEA LEQTIRQHRIKMVMVNPSFQNPTGTVMPLRKREQLVKVCQTYQVPILEDDVFGQLSFIPK TEIPPLKKLDPDNVLYIGSLSKILGSTTKIGWLSAPASVTKQIAEARKMMDVSLSIFPQM LAKMAIEDPSFSEKITLLNKQVEQRATAVYQVFKSLSEWEVSPVKGGFYLWAHWCQGALK PEDWQVFLREGVLVAPSVAFSEKRGSIRLNCSRISPEEIPLFCERMVRITRQLSENRQTK IEH >gi|307679222|gb|GL457025.1| GENE 80 75583 - 77307 2369 574 aa, chain + ## HITS:1 COG:SPy1224 KEGG:ns NR:ns ## COG: SPy1224 COG1109 # Protein_GI_number: 15675188 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Streptococcus pyogenes M1 GAS # 1 570 1 568 572 711 61.0 0 MSWEQVYQQWLNEENIPENLKNELKDLNTDPEKCEDAFYAPLEFGTAGMRGILGAGINRM NIFTVRQATEGLARFMDTQDPETKRRGVAIAYDSRHMSPEFAMEAAKTLAKHDIPSFVFE SLRPTPELSFAVRYFKAFAGIMITASHNPAAYNGYKVYGEDGGQMPPADADALTKYVRSI ENPLKIDVLSDEEVAHSGLINIVGEEVDNAYLKEIKTVTINQELINEMGKELKLVYTPLH GTGKMLGEKALKQAGFEKFVLVPEQAVADPDFTTVKSPNPEEHSAFEYAIRLGEKEGADL LIATDPDADRLGAAVRMPNGDYQVLTGNQLGSIMIHYILEAHQQADTLPQNAAVLKSIVS SELATAIAEKYNTKMFNVLTGFKFIAEKIQQYEEDHSQTFMFGFEESYGYLVKPFVRDKD AIQALVLLAEVAAFYKKQGKTLYDGLQDIFEEFGYFEEKTISVTMSGIEGSGKIKALMAK CREQAPTEFAGIQVAQTEDFKELTRTFADGQTEQLQTPPSDVLKYHLEDGSWIAIRPSGT EPKIKFYLATKATSSSEASEKIAAFEAVVNELTK >gi|307679222|gb|GL457025.1| GENE 81 77414 - 78196 1006 260 aa, chain + ## HITS:1 COG:SP0933 KEGG:ns NR:ns ## COG: SP0933 COG0345 # Protein_GI_number: 15900813 # Func_class: E Amino acid transport and metabolism # Function: Pyrroline-5-carboxylate reductase # Organism: Streptococcus pneumoniae TIGR4 # 1 257 1 256 265 170 38.0 2e-42 MKIGFIGAGSMGGAMIKGLLKAEAVKKEHLYVKGGSSGTAEALQKEWGFQLVTDYALFQE CKVIFIATGAKVVLPVLQELAPHFSNESLLISVATGHTIQEAQMALGNKEAKVVHAIPNT PVSVNQGVIGVALAPTIEGQTKDLVMELLATLGLVKEIREAQLETFGTVAGCSPAFVDIF MEALGDAAVLEGLPRDLSYEIVAQMIKGTATLALDTKKHPGALKDEVTSPGGSTIRGVVA LEKNGFRYAVMDAVQQANHE >gi|307679222|gb|GL457025.1| GENE 82 78334 - 78621 365 95 aa, chain + ## HITS:1 COG:BS_yozA KEGG:ns NR:ns ## COG: BS_yozA COG0640 # Protein_GI_number: 16078972 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 5 94 17 106 107 86 52.0 1e-17 MKQMEEIKQVSQLYKVLSDPTRLRILLLLKEGEHNVTAISEQLGMEQSAVSHQLKLLRDS RVVKARREGKTIFYTLDDHHVIDILNQTFEHIEHR >gi|307679222|gb|GL457025.1| GENE 83 78673 - 79965 1470 430 aa, chain + ## HITS:1 COG:lin2691 KEGG:ns NR:ns ## COG: lin2691 COG0460 # Protein_GI_number: 16801752 # Func_class: E Amino acid transport and metabolism # Function: Homoserine dehydrogenase # Organism: Listeria innocua # 1 427 1 426 428 480 57.0 1e-135 MKDTLKIGLLGLGTVGTGVLTLLKEHQEKISQVTGMNVVIEKAFVRNLETKQAQAEEYGL SLTTSIDDILEDKEIQIVVELMGTIEPAKTYIMKALEKGKHIVTANKDLLAQHGSELVAL AQKHHCDLYYEASVAGGIPILRTIANSLAADNIQQVLGIVNGTTNYMLTQMVSADKSYEE ALAEAQALGFAEADPTNDVDGIDAAYKMVILSQFAFGMNVSLPQVDIRGIRGLSLDDVAM AKQLGYEIKLIGSAEQNENSISVEVAPMLVNQKHPIASVRNEYNAVFIKSAGVGESMYYG PGAGAKPTATSVVSDLITIAKNIRLATTGHMFNSYQHKTQLTSSENVFGQYYFSLDVPDT PGQFLQLTQLMTKAEVSFDQLVQQKSDGQRARIVAITHQISKAQMQQVVIAIQNTEAFQL LNVMKVIGDE >gi|307679222|gb|GL457025.1| GENE 84 79968 - 81023 1466 351 aa, chain + ## HITS:1 COG:lin2690 KEGG:ns NR:ns ## COG: lin2690 COG0498 # Protein_GI_number: 16801751 # Func_class: E Amino acid transport and metabolism # Function: Threonine synthase # Organism: Listeria innocua # 1 348 1 349 351 535 82.0 1e-152 MYEGLLKQYQAYLPVTEKTPMISLAEGNTPLIPLPNLSKELGIQLYGKYEGLNPTGSFKD RGMVMAVAKAVEEGAKAIVCASTGNTSAAAAAYATRAGIKAYVVIPEGKIALGKLAQAIM YGADIISIPGNFDEALKAVREIAKTEAVALVNSVNPYRLEGQKTAAFEVCEQLGQAPDVL AIPVGNAGNISAYWKGFKEWHEKQGTTLPRMHGFEAEGAAAIVKGQVIEQPETVATAIRI GNPASWQLAEQARDESGGFIDAVTDQEILTAYRKIAAQDGVFIEPGSAASLAGVIQHVKS GKIKAGETVVAVFTGNGLKDPDTAMETEVAISKMSDVEEMRLHLRKGVATL >gi|307679222|gb|GL457025.1| GENE 85 81020 - 81883 964 287 aa, chain + ## HITS:1 COG:lin2689 KEGG:ns NR:ns ## COG: lin2689 COG0083 # Protein_GI_number: 16801750 # Func_class: E Amino acid transport and metabolism # Function: Homoserine kinase # Organism: Listeria innocua # 1 287 1 287 288 335 56.0 4e-92 MKIRVPATSANLGPGFDSCGIALSAYLTINVLGESEFWEIQHTLGEEIPTNEENLLIQTA LKIAPELTPKVIRMVSDIPLARGLGSSSSVIVAGIELANRLAHLNLSPKEKVRLATEMEG HPDNVAPAILGDFVVASHVENQVYHVKHHFPMCDVIAFIPEEPLFTEKSRAVLPEKLTYK EAVAASSIANVMIAAILNGDLPLAGKMMEQDKWHETYRRSLVPHLKEIRRLTQQKGAYGS FLSGAGPTVLILSPEERTNEIVQSLEKLSTKASIQIFNIDQEGVQVF >gi|307679222|gb|GL457025.1| GENE 86 81926 - 82783 863 285 aa, chain - ## HITS:1 COG:BH1373 KEGG:ns NR:ns ## COG: BH1373 COG1806 # Protein_GI_number: 15613936 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 12 266 10 264 270 226 43.0 3e-59 MTISEEKKCVTIFVISDSAGETASKLAAASMAQYPTVDFTLIRRTFVKDEDKLVQALEDA KKAEAMVLHTIINDHLVAIANQFFNEHQLFHFDILTPPVAEIERLTGVAPMREPGALHHL NENYFKRIEAMEFAVKYDDGKDPRGFLEADVLLLGVSRTSKTPLSLFLANKNLKVANLPL IPEAHLPKQLFEMDPKKIVGLTNDPNVLNGIRKERMRAYGLPENTSYSDIEKIRRELAFA NDLYQKLGCIVIDVASLSIEETASMILNALNLEDHSYYSTETAED >gi|307679222|gb|GL457025.1| GENE 87 82888 - 83322 444 144 aa, chain + ## HITS:1 COG:BS_zur KEGG:ns NR:ns ## COG: BS_zur COG0735 # Protein_GI_number: 16079565 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Bacillus subtilis # 7 141 2 135 145 135 47.0 2e-32 MAPVKTNIEQALETMKASGLKYTKKRELLMSYLIKRNRYVSAREVYEFMNETFKGVSYDT VYRNLHDFERLELLEKTELNGEQKFRFRCCQEVEHHHHFICTVCGKTEEIHMCPMNFFEE QLKGCSIEGHRFEILGRCADCCEK >gi|307679222|gb|GL457025.1| GENE 88 83425 - 83664 400 79 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227519866|ref|ZP_03949915.1| 30S ribosomal protein S21 [Enterococcus faecalis TX0104] # 1 79 1 79 79 158 98 1e-37 MWVFPTNKKNGYFLSSEGGNNMSKTVVRKNESLDDALRRFKRSVSKAGTLQESRKREFYE KPSVKRKKKSEAARKRKKF >gi|307679222|gb|GL457025.1| GENE 89 83690 - 84139 420 149 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 [Lactobacillus johnsonii NCC 533] # 1 146 1 146 147 166 55 5e-40 MSLLTTLNDDIKTAMKAKDKETLAVLRMLKTAIQNDQIKAGRELNGEEELTVLSREMKQR KDSLSEFEKAGRDDLVEKVKVEIAIVEKYMPQQLTEEEIRQLVQEVMTQTGATSPKDFGK VMGAMMPKVKGKADGNQVNAIVKELLQEN >gi|307679222|gb|GL457025.1| GENE 90 84322 - 85296 1254 324 aa, chain + ## HITS:1 COG:SP0948 KEGG:ns NR:ns ## COG: SP0948 COG1702 # Protein_GI_number: 15900827 # Func_class: T Signal transduction mechanisms # Function: Phosphate starvation-inducible protein PhoH, predicted ATPase # Organism: Streptococcus pneumoniae TIGR4 # 5 317 2 314 322 413 65.0 1e-115 MTDNQSKSLELILTDSDDAHMLLGTHDKHIKFLEENTHVTINSRGEVIQLIGESSEVELV ASVLRALQTLIQRGIKVHTPDVVSALKMAKAGNLEAFIAMYEEEIMKDHHGRAIRIKNVG QKKYIDAVKTHDVIFGVGPAGTGKTFLAVVMAVAALKKGEVQKIILTRPAVEAGESLGFL PGDLKEKVDPYLRPVYDALYQIFGMDHTNRLMERGVIEIAPLAYMRGRTLDDAFVILDEA QNTTVAQMKMFLTRLGFSSKMIVNGDTSQIDLPRGVTSGLVNAERTLKDIEKIAFVNFEA SDVVRHPVVAQIIQAYEKEQQKHS >gi|307679222|gb|GL457025.1| GENE 91 85325 - 87523 992 732 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762592|ref|ZP_02169656.1| ribosomal protein S21 [Bacillus selenitireducens MLS10] # 20 730 26 748 750 386 33 1e-106 MKKVLTKLGDRLGKAYLPILLAVFSLLLFMIMFGSVHQKRVEIKEGQLAEKTIRANKNIE NTYETEQRKKLAAEAVTPEYIYQEDTASVQHNRIDKLFKLIDSANEKVDKEYSNKQAKAK KEETIPAPTVEERVASLKSLFESLPQDEVTFYQSFPNVFYQTIFTLTSEQLDKVRSESLM LVDDAMQNHVRESDLDKIRQEANGKIQYLDITSTMQQVIRYIVNQGIVVNDIANEKRTEE LRQKAMNAVQPAMIYQGEIIVREGTQIDAKAVEKLELLGMTSQNTSIFPMVALALAILLQ VEVLIFFTKQVTEPSRQRSFIIFYTGAMLISVILMKFFQIFQTEQLMYIPLFYPAAFAPL ILNHFVNRRSGIIAAIFQVVFALFIFYNSIGTNSLTVILIMYLFSGFLATVVKRKRMSEQ VFPALMWVVVFPVFMAVVLMIYQGMSLTDGKTWTALICAGAGTVLSFLATMGLHPYIELL VTDDSMIVLNELSNPNHPLLKQLLEEAPGTYHHSMMVASLSANAVAEIGGRSLLTRVACY YHDIGKIKHANFFVENLPAGAENPHNFLLPEDSKQIIFGHVIDGAKILEEYNMPQMVIDI CRQHHGTTLMKFFYVKAKERNPEIKESDFRYPGPRPQTREAGIVSIADTCEAAVRAMDHP TNEKIQAFVHNVIQDRISDGQLDECGLTMKEIRIIEKSLINGLCSTFHSRIKYPKMKAEA EEMKDEQEKRDD >gi|307679222|gb|GL457025.1| GENE 92 87523 - 88002 632 159 aa, chain + ## HITS:1 COG:lin1502 KEGG:ns NR:ns ## COG: lin1502 COG0319 # Protein_GI_number: 16800570 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Listeria innocua # 1 159 4 161 161 175 64.0 3e-44 MDITFIDETEKVPTEEIKEIENLLQFAAGFLEIAEDTEMSVTFTDNAGIQVINRDYRGKD MPTDVISFALEDEGEDELPIIFDDEELAELPRNLGDLIISTERAAEQAVEYGHTLEREMG FLAVHGFLHLNGYDHMEPEDEKEMFGLQKEILDAYGLKR >gi|307679222|gb|GL457025.1| GENE 93 87986 - 88387 411 133 aa, chain + ## HITS:1 COG:L95012 KEGG:ns NR:ns ## COG: L95012 COG0818 # Protein_GI_number: 15673069 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Diacylglycerol kinase # Organism: Lactococcus lactis # 4 128 25 149 151 124 52.0 6e-29 MALKDEQTGKNKHFINSLEFAWQGIKTVFREERNMRKHVAFGVTAIVFGFLFSLTLAEWL WLLLAVFLVWLAEIINTIFENVVDMFTDFHFHPIGKKVKDMAAGAVLLTAGFAVLVGLIL FVPKILQIIQMWK >gi|307679222|gb|GL457025.1| GENE 94 88401 - 89303 1222 300 aa, chain + ## HITS:1 COG:SP0969 KEGG:ns NR:ns ## COG: SP0969 COG1159 # Protein_GI_number: 15900846 # Func_class: R General function prediction only # Function: GTPase # Organism: Streptococcus pneumoniae TIGR4 # 6 300 4 299 299 424 73.0 1e-119 MTTEHKSGFVAIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGIYTIPEAQIVFI DTPGIHKPKHRLGDFMVESAYNAMREVDATLFMVSADQKRGKGDDFIIERLKNNNSPVYL IINKIDKVHPDDLLSIIEDYSKQMDFKEIIPISATEGNNFEHLMDVLVEQMPEGPQYFPD DQITDHPEYFIVSELIREKVLLLTRDEIPHSVAVVVDSMKRDENDKVHVQATIIVERDSQ KGIIIGKGGKMLKQIGTKARQDIEYLLDDKVYLELWVKVQKDWRDKKIYLQDFGYRKEEY >gi|307679222|gb|GL457025.1| GENE 95 89386 - 90180 792 264 aa, chain + ## HITS:1 COG:L1006 KEGG:ns NR:ns ## COG: L1006 COG1381 # Protein_GI_number: 15672040 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Lactococcus lactis # 1 253 1 251 251 239 45.0 3e-63 MALGETKGIILFTKDFKEKDKLVKIFTESYGKLMFFVKGAHRKNNPLLPAILPFTEAVYI GNFREEGLSFLNSSKEVQPFRNIQQDIFINAYGTYILNLVDAAIEDQHYDPNLFQFTHMA LSALNEQKDPEIITNIFEIQLLERFGVRPEWHHCVACGETQGKFDYSSRYSGVLCEKHWH LDEQRYHADPRAIHFIRLFSQVSYEKVQNIQVKEETKKSIRETIDMLYDEYVGLHLKSKK FIDQMKTWENTLKIPPRKKEEKET >gi|307679222|gb|GL457025.1| GENE 96 90949 - 91857 1138 302 aa, chain + ## HITS:1 COG:SP1475 KEGG:ns NR:ns ## COG: SP1475 COG0752 # Protein_GI_number: 15901325 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, alpha subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 302 1 302 305 533 84.0 1e-151 MKNKLTVQEMILTLQKFWSSNGCMLMQAYDTEKGAGTMSPYTFLRAIGPEPWNAAYVEPS RRPADGRYGENPNRLYQHHQFQVVMKPSPENIQELYLESLKLLGIDPLEHDIRFVEDNWE NPSMGCAGLGWEVWLDGMEITQFTYFQQVGGLQCHPVTSEITYGLERLASYIQEVESVYD LEWTQGVKYGEIFVQPEYEHSKYSFEISNQEMLLENFDKFEKEAKRCIEESLVHPAYDYI LKCSHTFNLLDARGAVSVTERAGYLARIRNMARSVAKIFVAEREKLGFPLLNKDQSVSKE AE >gi|307679222|gb|GL457025.1| GENE 97 91859 - 93943 2758 694 aa, chain + ## HITS:1 COG:lin1495 KEGG:ns NR:ns ## COG: lin1495 COG0751 # Protein_GI_number: 16800563 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, beta subunit # Organism: Listeria innocua # 1 694 1 688 688 666 48.0 0 MAKDLLLEIGLEEMPAHVVTLSRIQLEEKVIKFLDEHHLDYETVQSFATPRRLAVKVTAI PEKQADVEEEVKGPAKKIALDAEGNWSKAAQGFVRGQGVTTEDIVFKELNGVEYVYVTKF TKGQSAKEVLTKLNDVITSLTFPVTMHWANYDFEYIRPIHWIVALLDDEVISFNVLDVTT GQTSRGHRFLGDDVTFQHANEYEAKLKEQFVVVQPNERKQMIVDQANALAAEKNWQLALD EELLEEVTNLVEYPTAFVGSFDEKYLSVPDEVLVTSMKEHQRYFEVRNDQGLLMPHFIAV RNGDNVHLENVIKGNEKVLIARLEDAEFFYNEDKKLTIEACVEKLKNVTFHEKIGSIYEK MQRVALIAQIIGRKVGLSEEELEDLKRASEIYKFDLVTNMVGEFPELQGIMGEKYALLQG EKPAVATAIREHYLPTSSEGELPETAIGAVLALADKLDSVFSFFSVGMIPTGSNDPYALR RQTYGVIRIIEDKGWTFPLVQLQTEVDEAVNQDVEKYGVLLNEGQAEVVEFVKARLRQLL MTKNVRHDIIDAVVSAEQADLSKLFASANILKSRFEDQDFKPSMEALTRVINLAKKGQEL LGDTEEGIDPSLFENKAEKELYQAVNDLSEAFATRTIAENYEALVNLRPLIDAYFNETMV MVEDEKVKQNRLKQLMQIAKMALSIASLDLLIVK >gi|307679222|gb|GL457025.1| GENE 98 93983 - 94174 312 63 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315144754|gb|EFT88770.1| ## NR: gi|315144754|gb|EFT88770.1| conserved hypothetical protein [Enterococcus faecalis TX2141] # 1 63 1 63 63 111 100.0 1e-23 MYETTFEQILTQLSKPAVRALTNEKIDSVDELYARGRKALLSLHGFGPKSIRTIEEMTGK ELK >gi|307679222|gb|GL457025.1| GENE 99 94208 - 95140 1133 310 aa, chain - ## HITS:1 COG:SPy0351 KEGG:ns NR:ns ## COG: SPy0351 COG0706 # Protein_GI_number: 15674505 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Streptococcus pyogenes M1 GAS # 4 310 5 307 307 263 47.0 3e-70 MRKLNRWLYGSGLLFLVMFLSGCVKTGADGQPTGEGFVYNFLVLPMSNAITYLVDNFNWN YGWAIIFITIIVRIIILPLGLHQSKKSFIQTEKMQAIKPQVDVAQAKMKQASTREEQMAA QAELQRIYKENNVSMVGGIGCLPLLIQMPIFSSLFFAARYTKGIATASFLGMNLGQPNMI LVALAGLAYLAQGYISMIGIPEEQKKTMKSMLIVSPLMIVFMSFSSPAGVALYWVVGGIF TCIQSAITNILLRPRIKKQVQEELKNNPPKQVVTPIKDVTPKETNKVTQKTNQPKANGNN GRNAGKQKRK >gi|307679222|gb|GL457025.1| GENE 100 95307 - 95582 357 91 aa, chain - ## HITS:1 COG:lin1418 KEGG:ns NR:ns ## COG: lin1418 COG1254 # Protein_GI_number: 16800486 # Func_class: C Energy production and conversion # Function: Acylphosphatases # Organism: Listeria innocua # 6 90 8 92 93 75 45.0 2e-14 MEKLRMNVQGRVQGVGFRYMTKMVADQLGVTGSVRNEDDGSVSITAIAPEDIMETFIKKI KDSPSPAGRVTYVDIQEDPLLEETEQFKVIQ >gi|307679222|gb|GL457025.1| GENE 101 95689 - 96465 206 258 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 26 252 3 240 255 84 27 3e-15 MKEITSTKNNQLKEWKKLHKKKYREELNQYIIEGFHLVEEAVKANADVQWILFNQRGQQE WGTWLAEQETEKLIFVSDEVLNSLSELPTSQGILAIVTLETQQEQSLSFKGGWLLLDNIQ DPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSMQGSHYHLPVLQRELTEVVQAFK KQGLPVFGTELNEAAIAYYEQEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAES LNVAIAAGVLMFYFENNQ >gi|307679222|gb|GL457025.1| GENE 102 96485 - 96922 589 145 aa, chain + ## HITS:1 COG:CAC1468 KEGG:ns NR:ns ## COG: CAC1468 COG0454 # Protein_GI_number: 15894747 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Clostridium acetobutylicum # 9 142 4 140 142 96 37.0 2e-20 MLTIKKTTQLTEKELETIMAIWLQTNLEAHPFVAPTYWQENKAFVRAALPKATLILAEEE DQIIGFLGLMDNYIAGIFIKKAFQGKGIGQKLLQVAKEEQDVLSLAVYRENQAAYAFYQK QGFVQQKRTIDETGNEECHLVWQAQ >gi|307679222|gb|GL457025.1| GENE 103 97106 - 97891 1336 261 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29376895|ref|NP_816049.1| 30S ribosomal protein S2 [Enterococcus faecalis V583] # 1 261 1 261 261 519 100 1e-146 MAVISMKQLLEAGVHFGHQTRRWNPKMKKYIFTERNGIYIIDLQKTVKLVDAAYDYMKNV AEEGGVALFVGTKKQAQEAIKDEAIRAGQYYVNHRWLGGTLTNWDTIQKRIARLKKINAM EEDGTFEVLPKKEVAGLNKERERLEKFLGGIADMPRIPDVMYIVDPRKERIAVQEAHKLN IPIVAMVDTNCDPDEIDVVIPSNDDAIRAVKLITAKMADAFIEGNQGEDQATEELFVEET PEATSIEEIVDVVEGNNESAE >gi|307679222|gb|GL457025.1| GENE 104 97997 - 98878 582 293 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts [Haemophilus influenzae R2866] # 1 287 1 275 283 228 44 8e-59 MADVTAKMVKELRDMTGVGMMDAKKALVKVEGDMEKAVDFLRENGMAKAAKKNDRIAAEG LANVATVGNVAAIVEVNSETDFVSKNEMFQDLVKDIATKVAENKPATMEEAMAIKTEKGT IESDLIEATTVIGEKISFRRFEVVEKADNAAFGAYLHMGGRIAVLTVIDGTTDEEVAKDV AMHIAAINPRYVNESQIPQEELEHEKAVLTEQALNEGKPANIVEKMVVGRLQKFKAEIAL VDQPFVKDPDMTVEKFVASKGGEVKSFVRFEVGEGIEKREDNFADEVMSQMKN >gi|307679222|gb|GL457025.1| GENE 105 99139 - 99861 1043 240 aa, chain + ## HITS:1 COG:lin1350 KEGG:ns NR:ns ## COG: lin1350 COG0528 # Protein_GI_number: 16800418 # Func_class: F Nucleotide transport and metabolism # Function: Uridylate kinase # Organism: Listeria innocua # 1 240 1 241 242 358 76.0 5e-99 MVKPKYQRVVLKLSGEALAGEDGFGIKPPVIKEIVQEIKEVHELGIEMAIVVGGGNIWRG QIGAQMGMERAQADYMGMLATVMNALALQDTLENLGVPTRVQTSIEMRQIAEPYIRRRAE RHLEKGRVVIFAGGTGNPYFSTDTTAALRAAEVDADVILMAKNNVDGVYSADPRVDETAT KFEELTHLDVISKGLQVMDSTASSLSMDNDIPLVVFNLNEAGNIRRAILGENIGTTVRGK >gi|307679222|gb|GL457025.1| GENE 106 99865 - 100422 1002 185 aa, chain + ## HITS:1 COG:lin1351 KEGG:ns NR:ns ## COG: lin1351 COG0233 # Protein_GI_number: 16800419 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome recycling factor # Organism: Listeria innocua # 1 185 1 185 185 213 70.0 2e-55 MSKEVLATAKEKMTKAEESLRRELGQIRAGRANASLLDRIQVKYYGAPTPVNQLASINIP EARVLMITPFDKNSIADIEKAIQMSDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKE AENSKVAVRNVRRDAMDELKKAQKNGDITEDELRSFEKDVQKLTDDSIKNIDAITAEKEQ ELLEV >gi|307679222|gb|GL457025.1| GENE 107 100792 - 101562 194 256 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 3 228 1 221 245 79 27 8e-14 MSVLEIKNLHVSIEDKKILKGVDLTINTGEIHAIMGPNGTGKSTLSAAIMGNPNYEVTEG EILFDGVNVLDLEVDERARLGLFLAMQYPSEIPGITNAEFMRAAINAKRDEDNKMSVMQF LKKLDSKMELLNMPEEMAERYLNEGFSGGEKKRNEILQLLMLEPTFAILDEIDSGLDIDA LKVVSKGVNEMRGENFGALIITHYQRLLNYITPDVVHIMMEGRVVKTGGADLAKRLETEG YAGISQELGIDYKEEA >gi|307679222|gb|GL457025.1| GENE 108 101577 - 102863 1610 428 aa, chain + ## HITS:1 COG:SPy0287 KEGG:ns NR:ns ## COG: SPy0287 COG0719 # Protein_GI_number: 15674461 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Streptococcus pyogenes M1 GAS # 11 426 4 417 420 491 59.0 1e-139 MKKVNLMDYLDEVTAFSLEHEEPAWMTELRTTALKNADESELPHIDRVKFHRWPLLNVHM ESYVPSEGNVASFDQMKDNPLIVQQGSFHAFEQLPASLAEQGVIFTDIFTALQEHPELVK EYYMTKAVLPEEDKLTAAHAAFMNSGVFLYVPKNVVIEEPIESLFIQDSDSNQPFFKHVL IVADNHSEFSYLERFQSTGHHAEKASGNIVVEVIAKDGAKVKYSAVDQLGQTVTTYMNRR GYIMRDASVDWALGVMNDGDVVADFDSDLVGEGAHSEVKVVAISAGKQTQGIDTRVTNKA PHSIGHILQHGVIRERGTLTFNGIGHILKGAKGADAQQESRVLMLSDKARGDANPILLID ENEVTAGHAASVGRVDPEEMYYLMSRGLRKEEAERLVIRGFLGSVITAIPVKEVQNEFVE VIEGKLNA >gi|307679222|gb|GL457025.1| GENE 109 102860 - 104095 1547 411 aa, chain + ## HITS:1 COG:SP0869 KEGG:ns NR:ns ## COG: SP0869 COG0520 # Protein_GI_number: 15900752 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Streptococcus pneumoniae TIGR4 # 1 411 1 408 408 580 68.0 1e-165 MMDAATIRQSFPILFQEVNDEPLVYLDNAATTQKPSAVLDVLRHYYETDNANVHRGVHTL AERATKDYEASREKVRQFIHAKETAEVLFTRGTTTSLNWIAKSYGDLAVTAGDEIVISYM EHHSNIIPWQQLAQRTGAILKYIDVTEDGFLDMASARQQITEKTKIVSIAHVSNVLGVIN PIEELTQLAHQNGAVMVVDGAQAVPHMPVDVQAIDADFYAFSGHKMCGPTGIGVLYGKRH LLEQMEPVEFGGEMIDFVHLQESTWKELPWKFEAGTPNIAGAIALGAAIDYLTEIGLEAI HQHEAALVHYVLPKLQAIEGLTIYGPQDPKDHTGVITFNIDGLHPHDVATALDMEGVAVR AGHHCAQPLLNYLSVPATARASFYLYNTKEDADRLVEAIKATKEFFQHGTF >gi|307679222|gb|GL457025.1| GENE 110 104082 - 104549 643 155 aa, chain + ## HITS:1 COG:SPy0289 KEGG:ns NR:ns ## COG: SPy0289 COG0822 # Protein_GI_number: 15674463 # Func_class: C Energy production and conversion # Function: NifU homolog involved in Fe-S cluster formation # Organism: Streptococcus pyogenes M1 GAS # 1 147 1 146 159 163 57.0 1e-40 MALSKLDNLYRQVILDHSSHPHHHGTLDASSQTIELNNPTCGDVIELDVAIENGVIKDIA FQGSGCSISTASASMMTDAVLGKTIAEATALAEDFSQLVQGNEVAEDEKLGDAAMLSGVA KFPARIKCATLAWKALEQAVANNGQGEAGHLHCEK >gi|307679222|gb|GL457025.1| GENE 111 104568 - 105962 1676 464 aa, chain + ## HITS:1 COG:SP0871 KEGG:ns NR:ns ## COG: SP0871 COG0719 # Protein_GI_number: 15900754 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Streptococcus pneumoniae TIGR4 # 6 464 12 470 470 802 87.0 0 MSTVPELEEYKFGFHDDVEPVFSTGDGLTEDVVREISRVKGEPEWMLDFRLKSLEQFNKM PMQEWGPDLSDIDFSKIKYYQKPSDKPARDWDDVPDKIKETFEKIGIPEAERAYLAGASA QYESEVVYHNMKEEFEKLGIIFTDTDSALKEYPDLFKEYFSKLVPPTDNKLAALNSAVWS GGTFIYVPKGVRVDVPLQTYFRINAENTGQFERTLIIVDEGASVHYVEGCTAPTYSSNSL HAAIVEIFTRKDAYCRYTTIQNWSDNVYNLVTKRAKAYEGATVEWIDGNLGAKTTMKYPS VYLDGKGARGTMLSIAFAGANQIQDTGAKMIHNAPNTSSSIVSKSIAKDGGEVNYRGQVT FGKDSAGSISHIECDTIIMDEKSKSDTIPFNEIHNSQVSLEHEAKVSKISEEQLYYLMSR GLSEAEATEMIVMGFVEPFTKELPMEYAVELNRLISYEMEGSVG >gi|307679222|gb|GL457025.1| GENE 112 106057 - 107199 668 380 aa, chain - ## HITS:1 COG:L55605 KEGG:ns NR:ns ## COG: L55605 COG0582 # Protein_GI_number: 15673415 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Lactococcus lactis # 3 377 2 357 359 174 32.0 2e-43 MAKISKYKKKNGQVAWMYKGHIATDPRTGEKINTTRRGFSSKQEAQKDYDEYRHQILYGV KKKAPDMTFEDLYNEWITHQRTSVKASTIAISVRYANNQVLPAFGKLKLSNISVPYCQKV VDEWHSKYESYDYMRKQTAQILRYGVAMQYIDNNPMEKTLLPRKKEYEKNRKFYSKEELN NLLDAFKDFGNMKQYAFFRLLAYTGMRKSEVLALQWKDIDTFNKELHVNKTLAVDEFGKV IIQSPKTRASRRVISLDTETLSILNNWKLQQKEEYLKLGYNTSSKEQHVFTTVKNTLYIP NTVNDWLRYILKKYNLPRITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLDIYAH ITNNAPKKTGQDFADMMAHQ >gi|307679222|gb|GL457025.1| GENE 113 107238 - 107972 455 244 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315144769|gb|EFT88785.1| ## NR: gi|315144769|gb|EFT88785.1| hypothetical protein HMPREF9495_01422 [Enterococcus faecalis TX2141] # 1 244 1 244 244 429 100.0 1e-119 MIKRPPINYLERKKILGTKIKAIRKSKKLTQPAFGLMINNGQLIDKKTIYEWEKGTYLPI PERLSRIADLGNMSIEELVCGNVEEYILGIILYRDSIVLDGITFPDKNLFQHLRQQFPPV HSNLDTWLDRYSKLEPEMQEFIANKTCNKVKNEKISLFNILKIEELFINAIVEEFDNNIL FLTSSIEELLERMVNEWLPIQLKDMSYPEEAVREITDNINKLEQTISSIGKKYTKKKMKG GDTI >gi|307679222|gb|GL457025.1| GENE 114 108204 - 108479 373 91 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307277177|ref|ZP_07558281.1| ## NR: gi|307277177|ref|ZP_07558281.1| DNA binding domain, excisionase family [Enterococcus faecalis TX2134] DNA binding domain, excisionase family [Enterococcus faecalis TX2134] # 1 91 17 107 107 145 100.0 7e-34 MSLQIIDSIVSIQVEQQVKEIITVLKPMLEDIISGVTLEYMDYQQASEYLGVSVGTIRKY VSQYGLPVIKIDTVIRFKKSDIDSFMERYKG >gi|307679222|gb|GL457025.1| GENE 115 108577 - 110574 1132 665 aa, chain + ## HITS:1 COG:no KEGG:Dred_0377 NR:ns ## KEGG: Dred_0377 # Name: not_defined # Def: hypothetical protein # Organism: D.reducens # Pathway: not_defined # 6 450 1 492 679 92 23.0 7e-17 METSMINIPIYVDKEKLLEKPVTKKEKTDVRDRCLDNYREVTRDEFVEILNSSQSFIPSK TKNKGNDKESFVETRVIILDVDNTVKDEKGKVVDLSKDDSRYLSIEKVLSINLVHNSAFA IQKSIRYSENLEKYKIVFLLKEAITDYGKMVAVYEYLKKNIPGCDDNVNASNRMFFGGYK SDAVIIINEDNMLDITELPIDFTMTCSKNCQSDSGREYELVNETYFVKLIKNDDKEEMKQ WFKDCLFDSSDMSFNEIYERLLTIDMNKLLKSSKNLRCLFHNDHNPSASIFTSKTGHSIF YCHSSNCDISENFIGVVMLILKKDSRVETFNWLLENLDLYPTHFRKLKEESKVLFDTLES MKDKLFRTIRNYLEEMRRVYDVLLSDVNFFDDSKESVTCILSGEQLAKKMSSYYGKTYDI DKCNKLLSLMTFIGLIKKLDDEDVPLKMLEYLNRLKEEKALGNFNHKRSNVYRLDVFNTT SVIQKLNEDILPLLEKFHFTYQYFSYEWVKICFNEKEAKRVFPQNSRSELSKEKQLILDE AHEVLQGLSWQGTYLMTEKELINTVCERLRNVRDNSVKNALIENRGYFVKQGFTLERASK DIKKLYNVKASSSFLVYLAKGAGIDEVIKELILSGVELVPIYQFTSVTRDDGRRVRNRRD PIILN >gi|307679222|gb|GL457025.1| GENE 116 110650 - 110985 271 111 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|307295149|ref|ZP_07574989.1| ## NR: gi|307295149|ref|ZP_07574989.1| helix-turn-helix protein [Enterococcus faecalis TX0411] helix-turn-helix protein [Enterococcus faecalis TX0411] # 1 111 18 128 128 194 100.0 3e-48 MKQKQYAKVIREKRKALGWTQKELAKKIFSTQQAVARWENSVTEPNLDSLTALSRALGTP VSHFLDNVDIDYEEEFLALYRSLSTEDAIRTIDYMKLLKRQENERNQLLKD >gi|307679222|gb|GL457025.1| GENE 117 111114 - 111329 304 71 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|314938405|ref|ZP_07845696.1| ## NR: gi|314938405|ref|ZP_07845696.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] helix-turn-helix protein [Enterococcus faecium TX0133C] helix-turn-helix protein [Enterococcus faecium TX0133A] helix-turn-helix protein [Enterococcus faecium TX0133B] helix-turn-helix protein [Enterococcus faecium TX0133a01] helix-turn-helix protein [Enterococcus faecium TX0133a01] helix-turn-helix protein [Enterococcus faecium TX0133B] helix-turn-helix protein [Enterococcus faecium TX0133A] helix-turn-helix protein [Enterococcus faecium TX0133C] helix-turn-helix protein [Enterococcus faecium TX0133a04] # 1 71 25 95 95 124 98.0 2e-27 MKKVSNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKMLSEILSVPINE LFSDVFNKVNS >gi|307679222|gb|GL457025.1| GENE 118 111366 - 111731 374 121 aa, chain + ## HITS:1 COG:no KEGG:Bcell_3752 NR:ns ## KEGG: Bcell_3752 # Name: not_defined # Def: hypothetical protein # Organism: B.cellulosilyticus # Pathway: not_defined # 1 121 1 128 129 70 29.0 2e-11 MYCRKCGKEITNESKYCQFCGALQETDETTGTDTVKKSTEQTINEMKEQIVHGQETGKLY LIIGWISMVVSLAFIPVVFGAVAVIMGYLYREKDEQMGTILMIAGVAGAIFGVLLGMSMS Y >gi|307679222|gb|GL457025.1| GENE 119 111768 - 112094 283 108 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307292468|ref|ZP_07572319.1| ## NR: gi|307292468|ref|ZP_07572319.1| conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecium TX0082] conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecium TX0082] conserved domain protein [Enterococcus faecalis TX4000] conserved domain protein [Enterococcus faecalis TX2141] # 1 108 8 115 115 195 99.0 1e-48 MNKVNMNKKFVIIGIVVLAIIGIIFSRMTGSSGLEKSSVPLVTQILQEQYNLNRTCDDVT ITHDNGDNTYRAKATLDNGSAININVEYYPKKDRVYVEIPYTEVLMLN >gi|307679222|gb|GL457025.1| GENE 120 112248 - 112973 421 241 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|312952953|ref|ZP_07771809.1| ## NR: gi|312952953|ref|ZP_07771809.1| hypothetical protein HMPREF9504_02068 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9504_02068 [Enterococcus faecalis TX0102] # 1 241 1 241 241 429 97.0 1e-118 MKKKKLLWICLAILLIIGGIEIFTTYRLKTNQPKQYVSDMLNIIEEIDSEMKAFSKTSMD LGERYDFKGFMEDKMDEVSSREIPEGTPKAVRDTKDTLLEAIDNVNTALLTNDVKLLEQG QLCFSIAQAIYTEFLDGNIKEKSLNEKLNSFVETYTAIPPTWKLVNEDKGITINTDTEIS TDAQSLSDLLANLTGISNAVTEQVGKDIPLRLLENGKKDYSVVFKNGQVTDYNEVFKKVI E >gi|307679222|gb|GL457025.1| GENE 121 112973 - 113050 73 25 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MILPSFSFIYPTPLLYDRTYTSPVA >gi|307679222|gb|GL457025.1| GENE 122 113482 - 115074 1538 530 aa, chain + ## HITS:1 COG:SPy1906 KEGG:ns NR:ns ## COG: SPy1906 COG0286 # Protein_GI_number: 15675719 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Streptococcus pyogenes M1 GAS # 5 529 8 526 526 543 53.0 1e-154 MGAELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTV SKQTMLYRELLSDEESKEDLIATIVDILGYAISPEYLFNVLADQAKQATFQLNDLNKAFV QLASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVLGHDGDVIGDAYEF LISQFASEAGKKAGEFYTPHMVSDMMAQIVTLDQKERRFFSVFDPTMGSGSLMLNVRNYL THPDNVKYHGQELNTTTYNLAKMNLILHGVDAEEMNLRNGDTLNKDWPTDEPYTFDAVVM NPPYSANWSADTTFLDDSRFNRYGKLAPKSKADFAFLLHGFYHLKETGTMAIVLPHGVLF RGAAEGVIRQKLLEDGSIYAVIGMPANLFFGTSIPTTVIVLKKNRQNRDVLFIDASREFV KGKNQNKLSEENIQKILENYAERKDVEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPI DMVHVGNDIKKIRQEQQVLEKELLEAISSLQTTPENEAWLQGALEVFKHE >gi|307679222|gb|GL457025.1| GENE 123 115067 - 115285 281 72 aa, chain + ## HITS:1 COG:HP0790 KEGG:ns NR:ns ## COG: HP0790 COG0732 # Protein_GI_number: 15645409 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Helicobacter pylori 26695 # 19 69 245 295 431 63 56.0 7e-11 MSNDTRPEIRFPGFTEDWEERKLGELTESFDGKRVPIDSDLRISGKYPYYGATGIIDYVD DYIFNGGSVAKF Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:49:15 2011 Seq name: gi|307679221|gb|GL457026.1| Enterococcus faecalis TX2141 genomic scaffold Scfld98, whole genome shotgun sequence Length of sequence - 21800 bp Number of predicted genes - 34, with homology - 31 Number of transcription units - 6, operones - 5 average op.length - 6.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 33 - 104 104 ## + Prom 130 - 189 5.0 2 2 Op 1 . + CDS 354 - 563 287 ## EF2123 hypothetical protein 3 2 Op 2 . + CDS 550 - 774 302 ## EF2121 hypothetical protein 4 2 Op 3 . + CDS 741 - 830 154 ## 5 2 Op 4 . + CDS 827 - 1129 291 ## gi|307270093|ref|ZP_07551413.1| hypothetical protein HMPREF9498_02211 6 2 Op 5 . + CDS 1141 - 1380 389 ## gi|315144724|gb|EFT88740.1| conserved domain protein 7 2 Op 6 . + CDS 1381 - 1659 411 ## EF2120 hypothetical protein 8 2 Op 7 . + CDS 1671 - 2159 427 ## gi|315144726|gb|EFT88742.1| conserved domain protein 9 2 Op 8 . + CDS 2160 - 2360 115 ## gi|315144727|gb|EFT88743.1| conserved domain protein 10 2 Op 9 . + CDS 2364 - 2576 333 ## EF2829 hypothetical protein 11 2 Op 10 . + CDS 2577 - 2984 292 ## EF1283 RinA family transcriptional regulator + Term 3122 - 3158 1.5 + Prom 3149 - 3208 8.6 12 3 Op 1 . + CDS 3231 - 3875 540 ## gi|315144730|gb|EFT88746.1| hypothetical protein HMPREF9495_01441 + Term 3885 - 3919 3.0 13 3 Op 2 . + CDS 3943 - 4404 514 ## SPJ_1871 phage terminase small subunit 14 3 Op 3 . + CDS 4391 - 5668 656 ## COG1783 Phage terminase large subunit 15 3 Op 4 . + CDS 5681 - 7156 1093 ## EF2016 portal protein 16 3 Op 5 . + CDS 7131 - 8915 1167 ## EF2015 minor head protein, putative 17 3 Op 6 . + CDS 8916 - 9146 243 ## EF2014 coenzyme F420 hydrogenase domain-containing protein + Term 9147 - 9183 4.2 18 4 Op 1 . + CDS 9203 - 9523 377 ## EF2013 hypothetical protein 19 4 Op 2 . + CDS 9528 - 9770 238 ## gi|307280632|ref|ZP_07561680.1| hypothetical protein HMPREF9515_01674 20 4 Op 3 . + CDS 9775 - 10038 280 ## lin0103 hypothetical protein + Prom 10048 - 10107 3.8 21 5 Op 1 . + CDS 10179 - 10805 619 ## EF2012 hypothetical protein 22 5 Op 2 . + CDS 10819 - 11721 1207 ## EF2011 hypothetical protein 23 5 Op 3 . + CDS 11745 - 11981 479 ## gi|256956793|ref|ZP_05560964.1| predicted protein 24 5 Op 4 . + CDS 11990 - 12334 212 ## gi|315144742|gb|EFT88758.1| hypothetical protein HMPREF9495_01453 25 5 Op 5 . + CDS 12331 - 12708 455 ## PROTEIN SUPPORTED gi|229545408|ref|ZP_04434133.1| ribosomal protein L23 26 5 Op 6 . + CDS 12701 - 13099 402 ## EF2007 hypothetical protein 27 5 Op 7 . + CDS 13104 - 13478 377 ## EF2006 hypothetical protein 28 5 Op 8 . + CDS 13479 - 14321 835 ## COG5492 Bacterial surface proteins containing Ig-like domains 29 5 Op 9 . + CDS 14375 - 14725 476 ## EF2004 hypothetical protein 30 6 Op 1 . + CDS 14839 - 14928 60 ## 31 6 Op 2 2/0.000 + CDS 14947 - 17871 2457 ## COG5412 Phage-related protein 32 6 Op 3 4/0.000 + CDS 17861 - 18595 707 ## COG4722 Phage-related protein 33 6 Op 4 . + CDS 18592 - 21291 2124 ## COG4926 Phage-related protein 34 6 Op 5 . + CDS 21306 - 21798 489 ## EF2810 hypothetical protein Predicted protein(s) >gi|307679221|gb|GL457026.1| GENE 1 33 - 104 104 23 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVDHKEFFTPEMMNSYQKKRKTH >gi|307679221|gb|GL457026.1| GENE 2 354 - 563 287 69 aa, chain + ## HITS:1 COG:no KEGG:EF2123 NR:ns ## KEGG: EF2123 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 66 1 66 70 112 95.0 5e-24 MKLIYVLTGKEENKNYVKKFVGNYCSFGPKEDAKAFTSEEAEQMRRLLENSVGNAFVIDD DREEENDLY >gi|307679221|gb|GL457026.1| GENE 3 550 - 774 302 74 aa, chain + ## HITS:1 COG:no KEGG:EF2121 NR:ns ## KEGG: EF2121 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 73 1 73 74 114 91.0 1e-24 MIYIKNFVHDFDSSTITFEVEREGVTNHVETRDTGYGTTSTDINDFTEDWPDSEYNQLEE FLNGCQEIVHSFYR >gi|307679221|gb|GL457026.1| GENE 4 741 - 830 154 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSRNSAFILSLKDYIVGVEIIDFVEEEAQ >gi|307679221|gb|GL457026.1| GENE 5 827 - 1129 291 100 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307270093|ref|ZP_07551413.1| ## NR: gi|307270093|ref|ZP_07551413.1| hypothetical protein HMPREF9498_02211 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9498_02211 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9495_01434 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9508_02819 [Enterococcus faecalis TX0312] # 1 100 1 100 100 164 100.0 2e-39 MKQFNIELVRRDKVKVELDPEFFNEEWFAEFRHFFYDYETLEEIAEYITFNVVHNNETFI DGIGIPLRNGKRPYWLKKDEEVNEHVNVIYNSYDTEIEYE >gi|307679221|gb|GL457026.1| GENE 6 1141 - 1380 389 79 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315144724|gb|EFT88740.1| ## NR: gi|315144724|gb|EFT88740.1| conserved domain protein [Enterococcus faecalis TX2141] conserved domain protein [Enterococcus faecalis TX0312] # 1 79 1 79 79 122 100.0 8e-27 MKYKIAVTETLRATRYIEIEYDEDIDELLHDVENSPYEENVASILEELGATILKEDQPIV GKIGDWETESLDYSVMEVK >gi|307679221|gb|GL457026.1| GENE 7 1381 - 1659 411 92 aa, chain + ## HITS:1 COG:no KEGG:EF2120 NR:ns ## KEGG: EF2120 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 92 89 180 180 141 90.0 7e-33 MKFYEIKEPYFALIAAEDEKQCLKLYKDIVCEVEDEKEFFDDMKTIDKYEAFKMLAKSHT EEGDKTGAEEAFNQLENLEENGEVLLIDGSLL >gi|307679221|gb|GL457026.1| GENE 8 1671 - 2159 427 162 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315144726|gb|EFT88742.1| ## NR: gi|315144726|gb|EFT88742.1| conserved domain protein [Enterococcus faecalis TX2141] # 1 162 1 162 162 304 100.0 2e-81 MNKQELIDILENLECSTESLSYDNGYEQGVYDSLSHVILLDEPKKVVVPKFVANFIEDGK HYDKIAFLVHQKYLGINSLMRECPVKDWLMSVDYETVLSLVNGYEVEKEQLYYVKLTEIG YMRFGKKYFYSTDKEDAKRYTENQIKAIDERYWPFAVKVDGE >gi|307679221|gb|GL457026.1| GENE 9 2160 - 2360 115 66 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315144727|gb|EFT88743.1| ## NR: gi|315144727|gb|EFT88743.1| conserved domain protein [Enterococcus faecalis TX2141] # 1 66 1 66 66 123 100.0 5e-27 MIKFKEFNTQPYDVHITGFFKDLNKKNPDDVFEYVDLKCVDRNLVILVYRQTNRRIRQLG NVLKGG >gi|307679221|gb|GL457026.1| GENE 10 2364 - 2576 333 70 aa, chain + ## HITS:1 COG:no KEGG:EF2829 NR:ns ## KEGG: EF2829 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 2 65 1 64 77 122 90.0 5e-27 MLSYPELYILGRQVDGVYVEYLHGAEQADLFFNYTIACDERNHMNKTNMKDGEWKILKYG RPITVLGDDD >gi|307679221|gb|GL457026.1| GENE 11 2577 - 2984 292 135 aa, chain + ## HITS:1 COG:no KEGG:EF1283 NR:ns ## KEGG: EF1283 # Name: not_defined # Def: RinA family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 135 1 135 135 199 74.0 3e-50 MRTSTFNYIKDILGDYYKTDDYIRQRELELRHPYKETDINGDIQGKGTNSATTERLAITI ATDRRLWNLERNRNIIQSCLAESDEQTQVIIEELYLKNRPTLTLLGVAQQLFISKNTAYR LRNAFFERVAEELGL >gi|307679221|gb|GL457026.1| GENE 12 3231 - 3875 540 214 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315144730|gb|EFT88746.1| ## NR: gi|315144730|gb|EFT88746.1| hypothetical protein HMPREF9495_01441 [Enterococcus faecalis TX2141] # 1 214 1 214 214 364 100.0 3e-99 MESWQLWIPFGGTIAGIIANVYINYRQTKKNEELQKEITQKQIDANLKAKARIEWITEVR NLVSKYLSYLFDIKILVSRMQDIEEELSGLEKRTIQESTYIDRQRELKIKQLKKEDELMI CIQESILTAEKILLHFSKKDEHKAIEKELSDSVNIIKDIEAREARPGFYDMYLPKTDKTY ASKMRGLIDNSITRIRNIFREYLKTEWDRAKKGQ >gi|307679221|gb|GL457026.1| GENE 13 3943 - 4404 514 153 aa, chain + ## HITS:1 COG:no KEGG:SPJ_1871 NR:ns ## KEGG: SPJ_1871 # Name: not_defined # Def: phage terminase small subunit # Organism: S.pneumoniae_JJA # Pathway: not_defined # 6 147 27 161 166 98 42.0 1e-19 MIRNPKHQVFADEWLIDMNGTRAYKVAYPNIKKDTTARVNASRLLTDANVKQYIDEQLEK MQNERVADAQEVLEYLTSTMRGEKMKGVYNTETTNDEGEIFTHQKNYEYTPSTEERTKAA ELLGKRHALFTDKQQIEVTEMPVFVDDIGDDDG >gi|307679221|gb|GL457026.1| GENE 14 4391 - 5668 656 425 aa, chain + ## HITS:1 COG:SPy0972 KEGG:ns NR:ns ## COG: SPy0972 COG1783 # Protein_GI_number: 15674984 # Func_class: R General function prediction only # Function: Phage terminase large subunit # Organism: Streptococcus pyogenes M1 GAS # 3 421 6 417 429 146 29.0 1e-34 MMMVKKKLSELLPKKFHSVWRATLNSDILNIVCKGGRGSGKSSDIAHIITQLLMRYAVNA VGIRYVDNTLEQSIYEQMKWAIEQQGVTHLFKFNKSPLRITYIPRGNYMIFRGAQNPERI KSLKDSRFPFAIGWIEELGEFKTEDEVTTITNSLLRGELGNGLFYKFFFSYNPPKRRQSW VNKKYESSFQPENTFVHHSTYKDNPFISREFLKEVEAARDRNLLRARWEYDGEAIGSGVV PFSNLKVEKGCITDEMVANFDNIRNGLDFGYATDPLAFVRWHYDKKKNGIYAVDEIYGVK ISNREFAQKAKAKGYQSDRIASDSAEPKSIAELNNEHGMSHVFGVKKGPDSVQYGEEWLD DLDFICIDPLRTPNIAKEFENIDYQTDKDGNPKPRLEDKDNHTIDATRYAFSEDMEKNNV SFIKF >gi|307679221|gb|GL457026.1| GENE 15 5681 - 7156 1093 491 aa, chain + ## HITS:1 COG:no KEGG:EF2016 NR:ns ## KEGG: EF2016 # Name: not_defined # Def: portal protein # Organism: E.faecalis # Pathway: not_defined # 1 490 1 489 490 808 86.0 0 MFQSNLTLSRYKRLRTKYSTQINEELFDPNDFITEMKPFFDDRERKYKAYTSEENEIDSR PKPNTKIIKVNNKLHAGLYNTIVDQAADHFTGIPVKWDYDITEQRKSLIQKTKDLFLGNV SAKIKTPKEFDRLAELVKEMRFAMLDSDTARYQGACGVAFRLLEPVKTEGEWQLWASNVE PWRAEKYENADIFIREKYDTHQKKFFEEMKVVTKKKILTYNRYVETNLMNAAETFKLTAE TDNPLETFYLSEFKNNTNRYCDFEVAEELSDAFDRSLSDQQNEVEQFKLAYMAISGSRLD EKEARRMMEQLGIINLPDPQAKVGYVTKDINKDFNEYHLNQLKKLYYTVTKSIDFNDEVF KSNSSGEARKWQIIALEAKTNTKEQYFKEGLKEVAETMAAFIKFNDKLEVDVSKIVFTFS RSLPTDIGYLAEALPKLAPYVSKRTIINQIPFVKDPDYEADMMNLEQGQNYPSGEYGKLG GADNDEEENNG >gi|307679221|gb|GL457026.1| GENE 16 7131 - 8915 1167 594 aa, chain + ## HITS:1 COG:no KEGG:EF2015 NR:ns ## KEGG: EF2015 # Name: not_defined # Def: minor head protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 594 1 634 634 777 65.0 0 MTKKKTTASERYWEKRRELEDKARLKLEKKTLSELESVFERALVKIQRQLLSQADLHDIT QSEMLEDFSKRDQEKYRKYIEKNYEKLMESDEAYKQFIDEYFPSYDYAKVNRLLQLRADI FSTLADEAIASDVNGKFNNDLENITKRIYNSNANALMQLVGGSAPGLTKNELENIMNYPW SGKTFSSRLWGNISTLEQRLSNSIINSLASGGGVVEALKTMKNDGVISGMFKLEQGKFNR SIENLVRTEYSHFAVEGIRESFRGANVKESESWSAEDERVCSICGGFHGQLIKNEHPPYH TLCRCTEIPRIPEISDDIDALYEEMFGDLLDEFANENWGVKLNHPKEAVKDSVFDKTNMA DAFGKDNYNDFLNTFNSLENSKFKEALEKLGNQLEFFNINDVRAYALENKIQISKESLTG NRYAEPMEIVFHEMGHAIDSLGAKVLDSDFDKMSEMPTYQLKKAIQKDLLKTFNNVLKEA NGDSYQQVKNLKKLSIFDQSSIVKKYKKLSEKSPKVYSALSDMMESTGGFIDYPLGFGHG SKYWKKFGKQETEFFAHMSETIVNEEARKMMYETFPTASKMWENMLDDILKAVE >gi|307679221|gb|GL457026.1| GENE 17 8916 - 9146 243 76 aa, chain + ## HITS:1 COG:no KEGG:EF2014 NR:ns ## KEGG: EF2014 # Name: not_defined # Def: coenzyme F420 hydrogenase domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 76 1 76 76 120 89.0 1e-26 MFSCEDGAWSIIDATIKKYEQHFHDEFPIYEYIDVTKSDDFDFSIQGAKKLAILIDKHIK ENKLVHVPSDYHSRLY >gi|307679221|gb|GL457026.1| GENE 18 9203 - 9523 377 106 aa, chain + ## HITS:1 COG:no KEGG:EF2013 NR:ns ## KEGG: EF2013 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 106 1 106 106 199 98.0 2e-50 MKGLFEAVLNLEVTNGTEKAYKKAFEEENERYLTKHTLRDGNGNIVKDELKSVWGGNYCH VDILYSLPGKKSKLTISIVSRTLQNVKDAVTDYQMLGAELVHKNWE >gi|307679221|gb|GL457026.1| GENE 19 9528 - 9770 238 80 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307280632|ref|ZP_07561680.1| ## NR: gi|307280632|ref|ZP_07561680.1| hypothetical protein HMPREF9515_01674 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9515_01674 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9495_01448 [Enterococcus faecalis TX2141] # 1 80 1 80 80 110 100.0 4e-23 MDPYDYLDSDYEEYLKKQNEKKCTIKITTRTTLYFWYRAIQLYLWDVFRPYEAYELQEFI LEEFETKTEKYLKFKFKEMR >gi|307679221|gb|GL457026.1| GENE 20 9775 - 10038 280 87 aa, chain + ## HITS:1 COG:no KEGG:lin0103 NR:ns ## KEGG: lin0103 # Name: not_defined # Def: hypothetical protein # Organism: L.innocua # Pathway: not_defined # 1 87 1 87 87 70 44.0 3e-11 MNHEMFMEKCKELILEKENKGKNPDEYFMVKGTDIFVVWSCKTLQNSKAILSLKYTGAPL YEMTLNGDKKEIYMVAYLKESNTLIKV >gi|307679221|gb|GL457026.1| GENE 21 10179 - 10805 619 208 aa, chain + ## HITS:1 COG:no KEGG:EF2012 NR:ns ## KEGG: EF2012 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 6 207 5 205 207 209 74.0 5e-53 MKTKKLLPMNLQMFADGGGNEPEFTIDDFKAFVESNEDAQKFIQSQSQSAADKQLEAWKQ NNLDKLKQEAVKQYEEAKKNKTPEQLELEKLKAEFEAEKAKSRSNENKAFVAEQIAGLDL DKELKDSISQFMLNTLVSSDTEFTQKAVESFTGVLSTINEKHAEAIKNMEMTKAFGNKQQ TNAANGNQSTQPIENPKEALGQKLQAFN >gi|307679221|gb|GL457026.1| GENE 22 10819 - 11721 1207 300 aa, chain + ## HITS:1 COG:no KEGG:EF2011 NR:ns ## KEGG: EF2011 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 293 1 293 295 423 74.0 1e-117 MKKTTLNNLEYLDISQEINALQRPSTPFLSWLLGAGKTSPATSTEIKWRESELDGEDSSA QLEGGDYTDADSGRKWFNNYTEIFRKSTSVSGTLDAINVNGVGSELANQVSQRALEMKRD LNKKLLIGVKADENGTKGRQMAGVINLINSDNLVKTSAADAVTRKDVDKMFKTMFDKGYA GEKLCLVSTDMVDLMTDEVDKAGTKVFNFGDQVAFGLQLGKIVSNYGSGTALIEPSLPSG TMIALDTNYVELRPVREWRAEELAKTTDSKRIGLVGEYTIEYNASNSGAILNLATATPGE >gi|307679221|gb|GL457026.1| GENE 23 11745 - 11981 479 78 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256956793|ref|ZP_05560964.1| ## NR: gi|256956793|ref|ZP_05560964.1| predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis DS5] conserved domain protein [Enterococcus faecalis TX0027] # 1 78 3 80 80 87 98.0 3e-16 MVKKSEVKEEVIEETKEVTEEVKPETKTFKVLKNKNFVGFVHPETRKFITAIDGKIEVSV SDKKAIAILEEAADLTEI >gi|307679221|gb|GL457026.1| GENE 24 11990 - 12334 212 114 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315144742|gb|EFT88758.1| ## NR: gi|315144742|gb|EFT88758.1| hypothetical protein HMPREF9495_01453 [Enterococcus faecalis TX2141] # 1 114 1 114 114 194 100.0 2e-48 MTDEQKRKIIELIQTMLPNVAKERISSVLDLVLLEISSYNTCKIEIDWELFNSLITEILY QSLKSETEQAVTSIKRGDTSISYATTQQSITALLGNYSDTIKRLIGCDSGVFFY >gi|307679221|gb|GL457026.1| GENE 25 12331 - 12708 455 125 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229545408|ref|ZP_04434133.1| ribosomal protein L23 [Enterococcus faecalis TX1332] # 1 125 1 122 122 179 69 1e-44 MNEADILAMTYLDSCVIERMSDIENAETGITDQGYSPIHEGKLKCALSQSGLGSAGSLPV VENKGTINITYEDQKLFLMPDVDVKKADRITVIQSTGQKHILFAKKPFNYPSHIEVTLTG SAIDE >gi|307679221|gb|GL457026.1| GENE 26 12701 - 13099 402 132 aa, chain + ## HITS:1 COG:no KEGG:EF2007 NR:ns ## KEGG: EF2007 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 132 1 132 132 214 90.0 1e-54 MSKSDFRMTSNADKVIANLKKMTPIAEKEGIAMLNDSLAKIYQLIVPITPIKTGDLRRGY RIIKARKTSSGRIVGALINNEKYFKYVNDGHRTKNGGFVKGRFMLQKSYKLAHATYIPKR FKQMAIVIAKKG >gi|307679221|gb|GL457026.1| GENE 27 13104 - 13478 377 124 aa, chain + ## HITS:1 COG:no KEGG:EF2006 NR:ns ## KEGG: EF2006 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 124 1 124 124 214 91.0 1e-54 MYDKILKMLTSTIKQFSTAPIYLNDVMQSSEPFYFVLSIEESMTDNVGQNVQNKAYNVDI ALVDSKKNKQLVTSLTEDCGAFFNVLNLDGNELFPEDYQAFKTDGIQHVNFNVAFPQLIE WSEK >gi|307679221|gb|GL457026.1| GENE 28 13479 - 14321 835 280 aa, chain + ## HITS:1 COG:YPO2116 KEGG:ns NR:ns ## COG: YPO2116 COG5492 # Protein_GI_number: 16122351 # Func_class: N Cell motility # Function: Bacterial surface proteins containing Ig-like domains # Organism: Yersinia pestis # 195 280 221 306 306 76 52.0 7e-14 MANKKNVHIISVETPTWFPLVDESGNFPIYDEPTTIGTAVSIKPDVSTETTTDYGDSVAQ DSTVSFGGAEIGMETNGYENQVLATITGAKMVKGGVLRSGDDIARDGAFAYKRLKSNGKY RYTIFYKGKFALTSDETSTREGSSVTYTHPEWTGSFVDVPGLGYMYSVDEDDENVDREMI KNWFVKVTDPREESATPVSGVTLDKTELVLTVGEVATLTPTIAPENATNKNYSFKSNDTS IATVTPVQGKVTAVASGTTTIVVATEDGNHTAECSVTVNA >gi|307679221|gb|GL457026.1| GENE 29 14375 - 14725 476 116 aa, chain + ## HITS:1 COG:no KEGG:EF2004 NR:ns ## KEGG: EF2004 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 116 1 116 116 192 87.0 5e-48 MASKFQQKIKLMIKDGDKYTCKQFTSAEFLPGSVMDAGTDLQIKLEEATKTNDMEVIRPI LRECYDLIANVIFEGQFTGQEYVDGLDAREVLKITGQLLGSITSGYDAIYSDQKKK >gi|307679221|gb|GL457026.1| GENE 30 14839 - 14928 60 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKELMKLYAFQDAVQEFEDRRFLDEHTMF >gi|307679221|gb|GL457026.1| GENE 31 14947 - 17871 2457 974 aa, chain + ## HITS:1 COG:BH0960 KEGG:ns NR:ns ## COG: BH0960 COG5412 # Protein_GI_number: 15613523 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Bacillus halodurans # 522 890 136 494 584 74 22.0 1e-12 MNNEDLVLKMILDESGFSQGLNSAVKKLQGFDGEVDRTGQKGGRSLGSIWTSFVGNFLAS GATKIISKGIGLITSNIDGAINRVDTLNNANRVFENMGFSAGETSKTMDSLKKSIQGLPT PLDGAIKGVQLIASSTNDLGKSEQIFAALNNGILGFGGSAEMVDNAIIQLSQSFSNGKVD AQTWNSMINSGLGPALNALAKQMGLTAGQMKEGLSDGSISVEEFQDSLIKLNKEGGGGLK SLEQIAKDSTAGIKTGLANMKTAIVRGVANVVTKIDEGLKSAGFGSISEIIADKGAKMEA ALSKFAEMIPPMIKTAKTLYDTLKPYAPLLAGLAGSIGTLMLAKKVSAAFTAWQKATEGL SIAQAILNSTMLANPFVAILAAVIGLVTGFIYLWKTNEGFRDAVKNIWKNIQEVISSAAD IVVKAWDSTMEFFSNMWDGTKEAFSNAGTWMKEAPGNAADWVKNKWNGTKEFFSGLWDST KEGSKNTWENIKQGAADSAKSVGESFKNGFDNAKDWFKGIGKSISDVFTTAFDFVWKYIG PYVTGIKNAFKMVVNAMKANIENVKMIAENVVTILKNVLLAPILFITSMITGGWEEAKEN MIAVWDNIAEAAQTIWFGIKNIFYNTVTAISYSVTSIFNGLMLTIKKIWIDVKLFFTLLW IDIKYGAINVWIEIKYSIIETWINIKFEAIRIWESLKTWFFETVENIKNGVIDGWNNLKQ GTIDTFNATVQWSKDTWSNFKQWIVDTAVGIKDGVVQTWYRIRNGTIETFNNMVQGAKNA WNNLTRSVSDTVSNVKQTFEDLKHVDLFEIGKNIIQGLVDGIGSMIGAVGKKIKEVAGNI KDGIKGALKIHSPSRWMRDMIGKNIVLGVVDGIDQEKGTLDKSVKNMADLPTELPNFSVT GRYVNQQESQTSKSDKNNSNATTTVGGDTFNINLQAMGELDDKQLMGMAQKLVKYIQVVK TRENDATGGAFNGI >gi|307679221|gb|GL457026.1| GENE 32 17861 - 18595 707 244 aa, chain + ## HITS:1 COG:L63101 KEGG:ns NR:ns ## COG: L63101 COG4722 # Protein_GI_number: 15673032 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Lactococcus lactis # 6 244 4 249 249 162 39.0 6e-40 MEFKRGQFYINGKHSSEFNVFMRERPERLTAARVVELRERMGNDSIAVDFAYYKNVERTI SCYAKARDLKEVAFLEDEISFWLDMGNYSDFIVYFDEHYIYQAIVTSPPKFTGTRKSGNL IPFEFTVSIRPFKKNRSGKQWISNPKKIINVERYHSEPIIQVLGQGDISFYVNDRRFDLK GIDGDIIIDSEKQESYRKSGGAFELLNHKTVFKDYPILISGENNFRWIGNVTEFKIRTNW RRKV >gi|307679221|gb|GL457026.1| GENE 33 18592 - 21291 2124 899 aa, chain + ## HITS:1 COG:L63739_1 KEGG:ns NR:ns ## COG: L63739_1 COG4926 # Protein_GI_number: 15673033 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Lactococcus lactis # 1 741 1 727 727 533 42.0 1e-151 MIPVIFKPGEKDFSTNGLGRLIDATRCEVTEEANGKYELELDYPAISKFSDYFVNGYQIK AKPNDLEDYHIFEIKQTYKDTFTNSIVVYAQSRTYKLGNRQVRLVTVDNKNGLEAMRLIE SNMDEPCDIKLFSDINTASSTIFEARNVLNCIAGEQGSLLQYWGGEIKREPFKLSLLKRR GRDKVGTVRYGKDLSGLTIKFDWQSIITKVLPFAELQSGLDGTSQRIYGNAVKSEYIKNY PDVYAQYVQFTEDQGVKDLSSLNKVASKYFTAINPGCDKPKVSIELEIEKLTDSEEAKEF AKMRNYNLFDTFNVYHKLYDIDIDTKVTGIVYDSLTEKTKKITAGDTQIAFYKQQNQDFQ EAIKTLTKKDYMSNFIDYITDLINGVKGGSILQYPKNRPHTLYFMDTDSTDTAKNVIAIN NQGIGFSTTGWKGPFRNAWTIDGILNADFIRAGKIRSDIFETSFNAYGDILRLVNGALQA WNGKTKIMELTRKGMGFWDGSSHVGNMGTKGNPFPLLNDANGNPVVTDGKSLLLVGNSPT NIIGLSNEESTGLIIRGATQWNLANNSYFIGKGGNKSTIYVDRLIVGGKEVIPGDGSGGN DGDVPPELTTEKEKNAWAVWQFLKSKGYSEQATAGILGNMDQESGIMPDIDEGGGGPGYG LVQWTSPIAGESGRAYVQRLLAQAGISGDYRNITTQLKLLDWHMHNGQYIPSAAYPYSVA EFKALTDIGTATMAFEANFERPAVTHPERIPMAQYWYNLLKDLKPSKPTWMNPVRSTYTI TQEWDQIGWGTNVIHGGIDIASVPAGTSPPVYVARSGTVETVTYDGTGGNYVVVKHDDGY WTYYGHLDSVDLVVGEKVTTNSRVGIMGSTGLAKGIHLHFEVWKGGQWQRINPRDVINF >gi|307679221|gb|GL457026.1| GENE 34 21306 - 21798 489 164 aa, chain + ## HITS:1 COG:no KEGG:EF2810 NR:ns ## KEGG: EF2810 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 164 1 164 302 322 98.0 3e-87 MVKWQATLSTTEPYNYIGIQNVRQGNRNTEVLEAVLVENALPLDLTGCEVFFESVIDKKY PIQRAAKIVNAKKGIIQYTFDEYSMQSLHRQEAYFSIHKGDNLIGSTQNFSYFVVNAASK TEGEMGSYWQSIEDLIADMTAFINENKGDFTAWMNARKEEFEKW Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:51:21 2011 Seq name: gi|307679220|gb|GL457027.1| Enterococcus faecalis TX2141 genomic scaffold Scfld100, whole genome shotgun sequence Length of sequence - 12024 bp Number of predicted genes - 14, with homology - 14 Number of transcription units - 4, operones - 2 average op.length - 6.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 101 - 143 7.1 1 1 Op 1 1/0.000 - CDS 270 - 1079 793 ## COG0149 Triosephosphate isomerase 2 1 Op 2 . - CDS 1153 - 1800 714 ## COG0176 Transaldolase 3 1 Op 3 . - CDS 1871 - 2536 498 ## COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase 4 1 Op 4 7/0.000 - CDS 2536 - 3636 951 ## COG1299 Phosphotransferase system, fructose-specific IIC component 5 1 Op 5 8/0.000 - CDS 3654 - 3965 543 ## COG1445 Phosphotransferase system fructose-specific component IIB 6 1 Op 6 5/0.000 - CDS 3967 - 4419 390 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 7 1 Op 7 . - CDS 4412 - 6370 640 ## COG3711 Transcriptional antiterminator - Prom 6416 - 6475 6.5 + Prom 6652 - 6711 4.7 8 2 Tu 1 . + CDS 6942 - 7676 587 ## COG2801 Transposase and inactivated derivatives + Prom 7713 - 7772 2.4 9 3 Tu 1 . + CDS 7802 - 8005 83 ## gi|256617134|ref|ZP_05473980.1| predicted protein + Term 8027 - 8063 3.2 - Term 8013 - 8051 3.0 10 4 Op 1 . - CDS 8074 - 8610 437 ## COG0406 Fructose-2,6-bisphosphatase 11 4 Op 2 . - CDS 8607 - 9098 530 ## LAC30SC_10580 hypothetical protein 12 4 Op 3 . - CDS 9122 - 10267 1301 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 13 4 Op 4 10/0.000 - CDS 10282 - 11649 1166 ## COG3775 Phosphotransferase system, galactitol-specific IIC component 14 4 Op 5 . - CDS 11674 - 11952 369 ## COG3414 Phosphotransferase system, galactitol-specific IIB component Predicted protein(s) >gi|307679220|gb|GL457027.1| GENE 1 270 - 1079 793 269 aa, chain - ## HITS:1 COG:lin0364 KEGG:ns NR:ns ## COG: lin0364 COG0149 # Protein_GI_number: 16799441 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Listeria innocua # 4 268 2 253 254 168 35.0 9e-42 MEQRKPIVIMNWSMRQNLISEAEEYAVDVLNHQSENHKVEVVLLPSMGTIHQVSKVLTGS QFAFGAQNMAEIDQGELSGEFSIQSLVDMHGKFVELGHWERRKLYNETDETINKKVKLAL AYDISPIVCIGEIEEKDANNVIDEIKNPNYVQELKEELFLRIFNALYQIDRDKLKKIVIA YTPAWAVGKTKAASAPHISRAVAIIRNSLTELFGKDADNIRVVYGGTVSPENTKTMLDLA DLDGVLLGRFGSDPERLQQTIEVVEQIRC >gi|307679220|gb|GL457027.1| GENE 2 1153 - 1800 714 215 aa, chain - ## HITS:1 COG:lin0361 KEGG:ns NR:ns ## COG: lin0361 COG0176 # Protein_GI_number: 16799438 # Func_class: G Carbohydrate transport and metabolism # Function: Transaldolase # Organism: Listeria innocua # 1 215 1 215 218 341 80.0 7e-94 MKFFLDTANVDEIKRINELGLVDGVTTNPTIIAKEGRDFEEVIKEICSLVDGPVSAEVTG SQAEEMIAEAEVLAKWARNVVVKIPMTEQGLKAVNTLSKKGIKTNVTLVFTVAQGLMAAK AGATYISPFLGRLDDIGTDSMALIKNLRKVLDNYGYKAEIISASVRGLEHVEKVAELGAD IATIPGNLFPKLWSHPLTDKGIEQFEKDWVAFSNR >gi|307679220|gb|GL457027.1| GENE 3 1871 - 2536 498 221 aa, chain - ## HITS:1 COG:all4771 KEGG:ns NR:ns ## COG: all4771 COG0800 # Protein_GI_number: 17232263 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-6-phosphogluconate aldolase # Organism: Nostoc sp. PCC 7120 # 9 211 10 206 210 117 32.0 2e-26 MKLEMNDFIEKNKVIAICRGTYGEKLINLVSALNDGGVKLVEVTFDQGDPECLTKTPKAI ASLVKEFGNEVKIGAGTVLSIEQVEAAHQAGAEYIISPNTNSSVIKRTKELDMVSMPGAL TPSEIISANEAGADFVKVFPVRALGIGYIKDILGPINHIKLVATAGVTPDNLQDYLDLGF SGAGISGYLTDKRLIDTGDFATITKHALEMMSIVRENNVSN >gi|307679220|gb|GL457027.1| GENE 4 2536 - 3636 951 366 aa, chain - ## HITS:1 COG:BS_yjdD_2 KEGG:ns NR:ns ## COG: BS_yjdD_2 COG1299 # Protein_GI_number: 16078266 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Bacillus subtilis # 10 349 8 350 367 226 44.0 5e-59 MNIKATLKEVQKSFLSGVSFMMPAVVAGGIMLAISLATGEKSDTGVVVTNELMQNINLLG KAAFAMMIPILGGYIAYSIAGKPGLAPGMILGFLANNPVTVNDVEVKSGFLGAMLLGVAA GYLVKWMKKWKVSKTIKTILPILIIPTISVFILGLIYIYVVATPLAFLMNGLTSIMSSLN GSSAILLAVFIGLFGEVDMGGPITKSVSMFTLALMNEGIYEPNGMFRIAVAIPPIGIFLA TLFFKKKFTEGDRDAAVAAGIMGCIGITEGAIPFVVSDMKRILPSTMIGTAVGCVIGAIG NVKCYVPHGGFVVLPVVDNKLWFIAAIIIGSLVTALILGFLKPALEETPAKKKNKSQVAD LTKEKA >gi|307679220|gb|GL457027.1| GENE 5 3654 - 3965 543 103 aa, chain - ## HITS:1 COG:STM4113 KEGG:ns NR:ns ## COG: STM4113 COG1445 # Protein_GI_number: 16767378 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system fructose-specific component IIB # Organism: Salmonella typhimurium LT2 # 2 95 3 96 106 88 48.0 2e-18 MKIVGVSACPTGVAHTYMAQEALEKEGKKRGHEIKIETQGSIGIENEVTEEEAEEADVVI LAVSVFIENEERFEDKLVLNADVNDAISYPAKVLDAAEKLVNG >gi|307679220|gb|GL457027.1| GENE 6 3967 - 4419 390 150 aa, chain - ## HITS:1 COG:lin0446 KEGG:ns NR:ns ## COG: lin0446 COG1762 # Protein_GI_number: 16799523 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Listeria innocua # 1 137 6 144 154 88 36.0 6e-18 MIDEGLIVLDSALTNKKSIIHYLSEKAKEFGYLKNSANYIKAVNKREEEFSTAIGYDVSI PHGKSKEVINPFICFLRTNQPIQWDTNGNTVELVFMLGIPEENKTTFHLKVLAEISKKLL DEGFRNDLLTGSKESILDSLYQVEKKIGGI >gi|307679220|gb|GL457027.1| GENE 7 4412 - 6370 640 652 aa, chain - ## HITS:1 COG:BH3853 KEGG:ns NR:ns ## COG: BH3853 COG3711 # Protein_GI_number: 15616415 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus halodurans # 4 493 3 496 700 147 24.0 9e-35 MHEISKRQHKLLRLLLEQKDFLPVNHFSKILSISDRTLYKDIDELNKALKKRKIEILKRQ GKGIFLSKSDLSNDEILKIFGEASTQIDFNQLPLERQIKMAEYLLLRNKKVSYQLLSDEF LVSRTSISNDLDQIQTVIEGSSVTIRSDNNGTKVNGNESEIQKAIKQYAYFIIDKSDLTN SYRVQFPSLLFSFLPKDIIKKVSGLLQTNDHFNIDKLSDDHFQSLVLSISIFVLRLQEGF HIEYQDNFLFENVESLKTFFLANELVENLELDNSIKLDSNDFEYFNRQLVAHGFEPRLRD LAIQKEYDAVVRKMIQKMSDSIQVDLTRDEKLYMNILYHLVSMIYRSKLNVPVSNPLLEE IKREYSVLYSTTWLILAGIEKELDIRLTDDEVAFMMIHFQGAIDRLSANRKILIVCPTGI GTSELIANRLKRVFSPQDIVEVVSLRTLYKRDLNKIDLVISSVQLEKIDVPVTYVSPLMS KQDLKKVSATYLDLFYEEEVNDQPFEHLGKIIDSDLIFLNETVATKEQCIKRITQKLLQN DFVTDSFEQAIWDREKLGVTDLPIGAAIPHPSPSTVKESKLVIMTLVKPIRWNFRMINTV LMICVAEKDLKHIKGILSEIYRIVETKKNIDRFIFSKDEEEIVKVLGGQTID >gi|307679220|gb|GL457027.1| GENE 8 6942 - 7676 587 244 aa, chain + ## HITS:1 COG:AGc3822 KEGG:ns NR:ns ## COG: AGc3822 COG2801 # Protein_GI_number: 15889390 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 243 1 250 512 149 37.0 4e-36 MFSHEERVKAIQLFLKYDCSYAATIRKLGYPSVGALRQWYKEYLVSGELHQELRKKSKYS EEQKRVAVNHYFEYGQCYARTIRMLGYPNKGSLRQWCEELAPGARKLRKSAVKLTKDQKE DVLKKFYKPQTNRKGLAEAEGISRVALYQWKATYLGKDFPLPMTSKNQGKQKELLLKEVE ELQEQVHQLQLEKALLEGAAELLKKGKGINLLRLSNQEKTLLIDALRNQFNLKDLLQQLQ LSKI >gi|307679220|gb|GL457027.1| GENE 9 7802 - 8005 83 67 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256617134|ref|ZP_05473980.1| ## NR: gi|256617134|ref|ZP_05473980.1| predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis CH188] conserved domain protein [Enterococcus faecalis TX0411] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis CH188] conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX4000] conserved domain protein [Enterococcus faecalis TX2141] conserved domain protein [Enterococcus faecalis TX0630] # 1 67 44 110 110 133 100.0 4e-30 MRRSKHSILLVDEHKFDSPHFYKIADFADSHSVITNTLPTEDYQKRIDDGITDFIWLNPK LRSQPNE >gi|307679220|gb|GL457027.1| GENE 10 8074 - 8610 437 178 aa, chain - ## HITS:1 COG:ML1452 KEGG:ns NR:ns ## COG: ML1452 COG0406 # Protein_GI_number: 15827761 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Mycobacterium leprae # 6 148 10 166 224 80 35.0 2e-15 MIYVARHGQTQYNVDGKICGHADIELTEVGYAQAEELAQLVSDLEQPITKIYVSPLRRAQ ETARIINEKVSVPIEVEPRLIEMDFGQYDGLPIETPEFQKVRVEFSLPLPDGESIMDVAG RVYPLLAELEQSDEDVLLVCHNALIRVIDNYFHGKTMIDFLKFNVDNTQLLRYERKRY >gi|307679220|gb|GL457027.1| GENE 11 8607 - 9098 530 163 aa, chain - ## HITS:1 COG:no KEGG:LAC30SC_10580 NR:ns ## KEGG: LAC30SC_10580 # Name: not_defined # Def: hypothetical protein # Organism: L.acidophilus_30SC # Pathway: not_defined # 1 146 1 148 151 97 38.0 1e-19 MAEALVIAGFLGLLVVLQVKDQKKIIVAAQTSWIRMGLSIALTVAILVIFWPSNLADQIK LGAFAAIILINGFLKEGLSQEGVVKLGVLNGEFARYPQIQIEELAGGNSFVSFYKSKNNS FSLVFGKSQAEMVAALQQLATDSELVLGEMADEKRPLAKGSAR >gi|307679220|gb|GL457027.1| GENE 12 9122 - 10267 1301 381 aa, chain - ## HITS:1 COG:SMb20510 KEGG:ns NR:ns ## COG: SMb20510 COG4948 # Protein_GI_number: 16264240 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Sinorhizobium meliloti # 1 381 1 382 382 454 55.0 1e-127 MKILDITVYKVKPRWIFVKISTDEGIDGWGEMISGTKTETVVAGAYEIGNRLIGRNPFEI ERLFQEMHRSFFRGGPINGTIVSGLEMALWDIKGKAFNVPVYELLGGAARDNIKVYSWIG GDRPSEVAEQAQDRFDRGFTAVKMNATEELHYIDSYKKVDEVVERVASIRERFGDAMDIG VDFHGRVHKPMAKVLAKALEPFHPMFLEEVVLPENEEHYKEVADAVAVPLATGERLYTRW QFKNIFKQGAIDIIQPDVALCGGILETRKIAAMAEAHDMAVAPHAPYGPVALAATLQVDS CTPNVFIQEQSLGIHYNKGFDLLDFVKNKEVFQYKDGYVDLPSKPGLGLEMDEDRIKEIS QEGLVWTNPQWKNYDGTIAEW >gi|307679220|gb|GL457027.1| GENE 13 10282 - 11649 1166 455 aa, chain - ## HITS:1 COG:Z4877 KEGG:ns NR:ns ## COG: Z4877 COG3775 # Protein_GI_number: 15804015 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIC component # Organism: Escherichia coli O157:H7 EDL933 # 4 435 18 453 462 310 39.0 3e-84 MKIIMNVFNFFIDAGPTVMLPVIITIIGLIFGLKITRAFKSGLTLGIGFAGIKLILDFMT TNVGPAAKAMVERTGVKLDALDVGWGSIAAVTWASPIIPILIFAILLVNIVLLVLKRTHT LDVDIWNYHHMAIVGVMVYFVTKNVFLGVGASVVMAIVTFKISDWSQPMVESFFGIPGVS LPTVSALSSLVIAWPLNWLLDRIPLFRKSKFTIKDAQKYLGFFGDSMIMGLVIGMVIGAL AGYDIKAVLQLGVSMSAVLVLIPKMTSLFMEGLMPISDAAQKWSQEKFKGTRLFIGLDAA VVVGNPDVITTALIIIPLTIAMALVLPGNRVLPFADLAVVPFRVAMVVALTRGNLLKNIV IGLVITASLLWCGSATSPMLTAIAKSVGIDLGTSSMLISSFAATSMIQSYLVFIAFAYKP IIGIPVLLLVLAGVWYYFDGVKKVNREMNEPVEAQ >gi|307679220|gb|GL457027.1| GENE 14 11674 - 11952 369 92 aa, chain - ## HITS:1 COG:STM3783 KEGG:ns NR:ns ## COG: STM3783 COG3414 # Protein_GI_number: 16767067 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIB component # Organism: Salmonella typhimurium LT2 # 2 92 3 92 95 73 42.0 1e-13 MKRILVACGNGIATSTVVATKVKEYLQEHGVEVATTQTKLMEVPGKVEGYDLLVTTGQFD GQTGNVPVVKGMPILTGIGADKTMEEILNLLK Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:51:33 2011 Seq name: gi|307679219|gb|GL457028.1| Enterococcus faecalis TX2141 genomic scaffold Scfld101, whole genome shotgun sequence Length of sequence - 10935 bp Number of predicted genes - 14, with homology - 14 Number of transcription units - 8, operones - 5 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 595 - 654 8.3 1 1 Tu 1 . + CDS 827 - 1177 266 ## CD1871 hypothetical protein + Prom 1354 - 1413 2.8 2 2 Op 1 . + CDS 1471 - 1818 169 ## EF1871 thioredoxin family protein 3 2 Op 2 . + CDS 1811 - 1978 160 ## gi|229545543|ref|ZP_04434268.1| hypothetical protein HMPREF0349_0760 + Prom 2008 - 2067 4.1 4 3 Op 1 36/0.000 + CDS 2113 - 3282 588 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 5 3 Op 2 36/0.000 + CDS 3289 - 3948 251 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 6 3 Op 3 . + CDS 3948 - 5324 941 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Term 5418 - 5467 6.1 - Term 5413 - 5448 3.5 7 4 Op 1 2/0.000 - CDS 5455 - 6075 298 ## COG3464 Transposase and inactivated derivatives 8 4 Op 2 . - CDS 6111 - 6365 120 ## COG3464 Transposase and inactivated derivatives 9 5 Tu 1 . - CDS 6497 - 6607 166 ## gi|69243909|ref|ZP_00602487.1| Transposase, IS204/IS1001/IS1096/IS1165 - Prom 6743 - 6802 7.8 + Prom 6702 - 6761 4.3 10 6 Op 1 40/0.000 + CDS 6786 - 7439 550 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Prom 7490 - 7549 12.1 11 6 Op 2 . + CDS 7577 - 8755 668 ## COG0642 Signal transduction histidine kinase 12 7 Op 1 . - CDS 9080 - 10033 633 ## COG3328 Transposase and inactivated derivatives - Term 10057 - 10081 -1.0 13 7 Op 2 . - CDS 10103 - 10249 293 ## EF1874 IS256 family transposase - Prom 10349 - 10408 10.2 + Prom 10383 - 10442 9.0 14 8 Tu 1 . + CDS 10503 - 10934 351 ## EF1861 hypothetical protein Predicted protein(s) >gi|307679219|gb|GL457028.1| GENE 1 827 - 1177 266 116 aa, chain + ## HITS:1 COG:no KEGG:CD1871 NR:ns ## KEGG: CD1871 # Name: not_defined # Def: hypothetical protein # Organism: C.difficile # Pathway: not_defined # 1 116 46 161 385 193 97.0 2e-48 MSINANGKNETFKPSDYTLEAKKEYVYEYLGLKFKLSDKFRNYIADKKIAMLDDQSPIDK ELKYAILTFEKMTEEQKNAVIEKMGDGYKNWQNELERIGTIGIFEKNTSEEKNLKL >gi|307679219|gb|GL457028.1| GENE 2 1471 - 1818 169 115 aa, chain + ## HITS:1 COG:no KEGG:EF1871 NR:ns ## KEGG: EF1871 # Name: not_defined # Def: thioredoxin family protein # Organism: E.faecalis # Pathway: not_defined # 1 115 47 161 161 224 100.0 7e-58 MVNVFATWCTACVKEIPDLVEVQNEMKSKGVNIVGVVTDPVDDNGENKEAIEKSKLIHEK TKASYPFLMPDKTNFNGRLNGIQAMPETFFVDSNGETKVVLDKAIRICMECIGIG >gi|307679219|gb|GL457028.1| GENE 3 1811 - 1978 160 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229545543|ref|ZP_04434268.1| ## NR: gi|229545543|ref|ZP_04434268.1| hypothetical protein HMPREF0349_0760 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T2] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis HIP11704] hypothetical protein EFNG_00699 [Enterococcus faecalis CH188] hypothetical protein HMPREF9514_01699 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9521_01316 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9515_00116 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9509_02010 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9512_02510 [Enterococcus faecalis TX0635] hypothetical protein HMPREF0349_0760 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T2] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis HIP11704] hypothetical protein EFNG_00699 [Enterococcus faecalis CH188] hypothetical protein HMPREF9509_02010 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9515_00116 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9521_01316 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9514_01699 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9512_02510 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9496_02053 [Enterococcus faecalis TX4000] hypothetical protein HMPREF9500_00904 [Enterococcus faecalis TX0017] hypothetical protein HMPREF9495_01482 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9513_01949 [Enterococcus faecalis TX0645] hypothetical protein HMPREF9511_01905 [Enterococcus faecalis TX0630] # 1 55 3 57 57 85 98.0 1e-15 MDRIKNIINGSTKKDKYKIRDRFKHLFQLRIAIIWSVSDVDDVKMLVQWMQLVME >gi|307679219|gb|GL457028.1| GENE 4 2113 - 3282 588 389 aa, chain + ## HITS:1 COG:SP0599 KEGG:ns NR:ns ## COG: SP0599 COG0577 # Protein_GI_number: 15900507 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 389 1 387 387 247 37.0 3e-65 MKSSNEIEKALYESSNSSISITKKDGKYFNVNQFKDIEKLKEIEEKIIQYDGLAKLKDAK VVSGEQRINREDLSDEFKNVVSLEATNNTKRNILFSSGVFTIKEGKNIEENDKNSIIVHE EFAKQNNLKLGDEVDLELLDIEKSGKIKSHKFKIIGIFSGKKQETYTGLSSDFSENMVFV DYSTSQEILNNSENNEIANKILMYSGSAESTDLALNKLKELKIDESKYFVEKDSNAFEES LESVSGIKYIIKVMTYSIMLVGMVVLSLILILWLRERIYEIGIFLSIGTSKIQIIMQFIF ELIFISIPSIISSLFLGNVLLKVIVDGFINSEDSMISGGSLINNSSFMSNITTLGQSYLI LISIIVLSVVFASSLMLIKKPKEILSKIS >gi|307679219|gb|GL457028.1| GENE 5 3289 - 3948 251 219 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 189 1 199 223 101 33 3e-21 IMDILEIKNVAYSYANSKEKVLSGVNQKFELGKFYAIVGKSGTGKSTLLSLLAGLDKPQT GKILFKNEDIQNKGYSNHRKNNISLVFQNYNLIDYLSPVENIRLVNKSADESILFELGLD KKQIKRNVMKLSGGQQQRVAIARALVSDAPIILADEPTGNLDSVTAGEIINILKTLAKDR NKCVIVVTHSKEVADSADIILELSGKKLKKVNKMNLEVE >gi|307679219|gb|GL457028.1| GENE 6 3948 - 5324 941 458 aa, chain + ## HITS:1 COG:SP0601 KEGG:ns NR:ns ## COG: SP0601 COG0577 # Protein_GI_number: 15900509 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 456 1 457 459 505 60.0 1e-143 MIKNAFAYVTRKSLKSLIIILVILSMSTLSLISLSIKDATDRASKETFANITNSFSMEIN RQVNPGTPRGGGNVKGEDIKKISQTDSIDSYVKRINSVADLVDYDIIETQETLANQSPER AKNFKRTVMLTGVNDSTKETKFVSEAYKLVEGKHLENEDKNKILMHKDLAEKNNLKVGDK IKIKSNLFDADNEKGADETVEVEIKGLFDGHNSGGVSAAQELYENTLITDVHTAAKVYGN TEDTAVYQDATFFVKGDKNLDSVIKDLGKLDINWREYNLIKSSSNYPALQQSISGIYSIS NKLFFGSLIFAGVVVSLLLFLWMNARKKEIAVLLSLGISKLEIFGQFLIEMVFISIPAFV GSYFLAQYTADKLGNNILNKVTGDIAKQIAKQSASSQLGGGAEAEGFNKTLSSLDINVLP KFMIYVVIFMSLVLLVSLIISSFNILRRNPKELLIDNN >gi|307679219|gb|GL457028.1| GENE 7 5455 - 6075 298 206 aa, chain - ## HITS:1 COG:SP1582 KEGG:ns NR:ns ## COG: SP1582 COG3464 # Protein_GI_number: 15901424 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pneumoniae TIGR4 # 1 197 212 402 418 146 41.0 3e-35 MYAPYVSLVKKLFPNAQLIIDRFHIVQHIGRTFLNHRVKETTARLKGTSHSQRGLGKKLK RYWKLLQKEEAKLNYEKRVWRASFKDYLTESEIVDRLLSACPNLRQGYQLYQDILYAVKK RDQSLFEDCLNREVSGLPETYTTTLRTFKKFLPQIQNALHYSYSNGPLECLNNHIKVLKR NAYGFRSFYNFKLRIMIRHGKTFLTK >gi|307679219|gb|GL457028.1| GENE 8 6111 - 6365 120 84 aa, chain - ## HITS:1 COG:FN0275 KEGG:ns NR:ns ## COG: FN0275 COG3464 # Protein_GI_number: 19703620 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 1 83 130 212 317 77 46.0 6e-15 MTEIARQKNISTSSVYRVMKRFYRPLNPFKQTLPKVLCFDEFKSVRHVTSAMSFIMMDGQ SHALLDIVENRRLPYLEHYFLGFH >gi|307679219|gb|GL457028.1| GENE 9 6497 - 6607 166 36 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|69243909|ref|ZP_00602487.1| ## NR: gi|69243909|ref|ZP_00602487.1| Transposase, IS204/IS1001/IS1096/IS1165 [Enterococcus faecium DO] Transposase, IS204/IS1001/IS1096/IS1165 [Enterococcus faecium DO] # 1 31 1 31 424 62 87.0 8e-09 MDNHTRKLLGLTDKHLFFDEDWLIEKEYMSIALIWS >gi|307679219|gb|GL457028.1| GENE 10 6786 - 7439 550 217 aa, chain + ## HITS:1 COG:SP0603 KEGG:ns NR:ns ## COG: SP0603 COG0745 # Protein_GI_number: 15900511 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Streptococcus pneumoniae TIGR4 # 1 217 1 218 218 263 62.0 3e-70 MKILTVEDDNMIREGISEYLSEFGYTVIQAKDGREALSKFNSDINLVILDIQIPFINGLE VLKEIRKKSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLPVLKARIDSLIKKNYGH LEKFEYKDLSVNFNSYTAKINGEEIDVNAKELEVLKCLLDNNGQVLTRMQIIDYVWKDSE ETPYDRVIDVYIKELRKKLQLDCITTIRNVGYKLERK >gi|307679219|gb|GL457028.1| GENE 11 7577 - 8755 668 392 aa, chain + ## HITS:1 COG:SP0604 KEGG:ns NR:ns ## COG: SP0604 COG0642 # Protein_GI_number: 15900512 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Streptococcus pneumoniae TIGR4 # 2 388 49 434 442 287 41.0 2e-77 MANEISSNMNGKEIKYIEQTLEFYSKSSEIKVFIKEKNNKNEIQIKDNINVNLESDSNSL IIEEREIKLNDGKKTNLQFVSTADMQKDAKDLSLKFLPYSLLISILFSAIISLIYAKSIK NNIQEIKIVTDKMMKLDKKMSLKVSSNDEVGELKQQINDLYSTLLRTIDDLEFKNKEILK LEKLKYDFFKGASHELKTPLASLKIILENMKYNIGKYKERDIYINECIEIVDSLTKNISQ ILSVHSIENLNNDEEYLKINDTLEDILKKYEILANQKKITVNNYILDENVYIGKTALKII LSNLISNAVKYTDVNGVINIGIVNDWLYIENSYGNNKISNMDKIFDVKFDLNKENSNGLG LYIVSNILNNYNIEYKVLQDEEFFIFKIKIFS >gi|307679219|gb|GL457028.1| GENE 12 9080 - 10033 633 317 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 316 73 389 391 322 51.0 5e-88 MNLTIPRDRNGELSQQTLPAYKRTNDSLETTIIQLFQKGITMAEISKLIEKMYGHHYTPQ TISNMSKLVAEDVLAFKERTLEANYSVIFMDATHIPVKRQTVSKEAVYITIGIRLDGTKE VLGFTIAPTESAYIWKEVLQDLRKRGLEEVLLVVTDGLSGIEESIHSVYPNAQFQQCCVH VSRNIAHKVRVRDRKEICEDFKLVYQANSKEEALDHIDFMIRKWKKQYPRVVNLLLNPAL LTFYNFPHAIRRTIYSTNLIEGFNKQLKRYTRRKEQFPNEESLERFFISQFNQYNQKFLG RIHKGFKEIQDTLESMI >gi|307679219|gb|GL457028.1| GENE 13 10103 - 10249 293 48 aa, chain - ## HITS:1 COG:no KEGG:EF1874 NR:ns ## KEGG: EF1874 # Name: not_defined # Def: IS256 family transposase # Organism: E.faecalis # Pathway: not_defined # 1 48 1 48 396 70 70.0 2e-11 MTKFTIEIMQTLLNKGDLDELFQDHLERAINSLLQAELTAFLDYEKYD >gi|307679219|gb|GL457028.1| GENE 14 10503 - 10934 351 143 aa, chain + ## HITS:1 COG:no KEGG:EF1861 NR:ns ## KEGG: EF1861 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 136 1 136 281 266 99.0 3e-70 MNVGFIGAGKVGCSFGKYFQEHKIQVTGFYSKSEDSSLAASNFTSSKQYLNLRELVDEND TIFITTPDGQIQEVWQEIKNYQIKNKLICHCSGAISSDIFSNIQDYGAYGYSVHPMFSIS DKYNSYKKLKKSFITMICQIKLE Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:52:01 2011 Seq name: gi|307679218|gb|GL457029.1| Enterococcus faecalis TX2141 genomic scaffold Scfld102, whole genome shotgun sequence Length of sequence - 26960 bp Number of predicted genes - 23, with homology - 23 Number of transcription units - 12, operones - 7 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 33 - 83 15.1 1 1 Op 1 . - CDS 139 - 615 350 ## COG0178 Excinuclease ATPase subunit 2 1 Op 2 . - CDS 646 - 2376 1053 ## COG0178 Excinuclease ATPase subunit - Prom 2396 - 2455 7.3 + Prom 2347 - 2406 6.5 3 2 Tu 1 . + CDS 2538 - 4406 2103 ## COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases + Prom 4408 - 4467 36.5 4 3 Op 1 . + CDS 4675 - 4815 126 ## EF1033 6-aminohexanoate-cyclic-dimer hydrolase, putative + Term 4824 - 4876 9.6 + Prom 4827 - 4886 6.6 5 3 Op 2 . + CDS 4910 - 5839 836 ## COG3173 Predicted aminoglycoside phosphotransferase 6 3 Op 3 . + CDS 5882 - 5995 146 ## EF1035 putative lipoprotein 7 3 Op 4 . + CDS 5941 - 6531 557 ## EF1035 putative lipoprotein + Prom 6545 - 6604 3.4 8 4 Tu 1 . + CDS 6650 - 7051 545 ## COG0105 Nucleoside diphosphate kinase + Term 7057 - 7114 13.5 + Prom 7066 - 7125 9.8 9 5 Op 1 . + CDS 7211 - 8821 1638 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase + Term 8827 - 8871 7.5 + Prom 8854 - 8913 3.4 10 5 Op 2 . + CDS 8964 - 10049 992 ## EF1038 putative lipoprotein + Term 10061 - 10107 15.2 - Term 10044 - 10098 17.3 11 6 Tu 1 . - CDS 10165 - 10968 987 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 11056 - 11115 8.1 + Prom 11032 - 11091 3.1 12 7 Op 1 . + CDS 11120 - 11749 471 ## COG4330 Predicted membrane protein + Prom 11756 - 11815 10.4 13 7 Op 2 . + CDS 11901 - 13307 1663 ## COG2252 Permeases + Term 13396 - 13445 14.0 + Prom 13431 - 13490 7.5 14 8 Tu 1 . + CDS 13517 - 14713 945 ## COG0477 Permeases of the major facilitator superfamily + Term 14725 - 14780 3.1 - Term 14716 - 14767 10.5 15 9 Tu 1 . - CDS 14768 - 14953 258 ## EF1043 hypothetical protein + Prom 14813 - 14872 4.8 16 10 Op 1 3/0.000 + CDS 15071 - 18400 3297 ## COG0587 DNA polymerase III, alpha subunit + Prom 18431 - 18490 6.7 17 10 Op 2 12/0.000 + CDS 18573 - 19535 1336 ## COG0205 6-phosphofructokinase 18 10 Op 3 . + CDS 19600 - 21357 2423 ## COG0469 Pyruvate kinase + Term 21409 - 21454 8.3 + Prom 21651 - 21710 8.2 19 11 Op 1 20/0.000 + CDS 21731 - 22300 625 ## COG1399 Predicted metal-binding, possibly nucleic acid-binding protein 20 11 Op 2 . + CDS 22357 - 22536 322 ## PROTEIN SUPPORTED gi|29375627|ref|NP_814781.1| 50S ribosomal protein L32 + Term 22561 - 22611 12.2 + Prom 22626 - 22685 7.5 21 12 Op 1 2/0.000 + CDS 22741 - 24162 1769 ## COG0362 6-phosphogluconate dehydrogenase + Term 24173 - 24216 9.2 + Prom 24202 - 24261 3.4 22 12 Op 2 40/0.000 + CDS 24320 - 25006 941 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 23 12 Op 3 . + CDS 25017 - 26525 1404 ## COG0642 Signal transduction histidine kinase Predicted protein(s) >gi|307679218|gb|GL457029.1| GENE 1 139 - 615 350 158 aa, chain - ## HITS:1 COG:CAC1464 KEGG:ns NR:ns ## COG: CAC1464 COG0178 # Protein_GI_number: 15894743 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Clostridium acetobutylicum # 1 158 593 750 755 175 50.0 4e-44 MLHYLYNGKNIVEVLALSVKDGYDFFKDQPFALSLKNLLEVGLGYLKLNQSLSTLSGGEL QRVKLADTLHQKKAIYLMDEPTDGLHLIDIQQSLQLFNRMVEEGNSLILLEHHIDVIKSA DWLIELGPEGGENGGQLLFTGTPANMLNSTHSITKGYL >gi|307679218|gb|GL457029.1| GENE 2 646 - 2376 1053 576 aa, chain - ## HITS:1 COG:CAC1464 KEGG:ns NR:ns ## COG: CAC1464 COG0178 # Protein_GI_number: 15894743 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Clostridium acetobutylicum # 2 576 8 581 755 615 51.0 1e-175 MEWIEIKHATQNNLKNISVNIPKKQLTVVTGLSGSGKSSLVFDTLAAESRRELNDTFSSF VQNYLPKYGRPEVEKIENLPVAIVIDQKKVAGNSRSTVGTYTDIYTFLRLLFSRAGSPFV GYSDTFSFNHPDGKCPTCDGLGKITEINLHQLVDYDKSLNEGPIDFPTFTVGNWRWKRYA HSGLFDLDKKIKDYSPEELALFLYAPQQKLANPPKEWPHTALYEGIVPRMQRSILHTDEG KRHQKYLNHFVTVKRCPDCLGSRVNERVRSCKINQKSIADAVDMPLTELHSFIRSMDLSL IKTIQEELLVRLEALINIGLSYLTLGRATETLSGGEAQRIKIAKYVNSALNDIMYILDEP SAGLHPKDIERISRALLNLKNKGNTVVLVEHNPQLIREADFIIDIGPFAGENGGHVQFSG TYDAFLASKTLTSQALQEPLPLNDQPRKARKSLSIEHATLHNLNNLSVEVPLGVLTVICG VAGSGKSSLAEEIYQKAQADNQEIIHLSQKSITANLRSTPMTYLNIFDKVRKLFAEENHV SPALFSYNSKGACPTCKGKGIIVSDMSFMEDVTSIC >gi|307679218|gb|GL457029.1| GENE 3 2538 - 4406 2103 622 aa, chain + ## HITS:1 COG:SPy0902 KEGG:ns NR:ns ## COG: SPy0902 COG0154 # Protein_GI_number: 15674924 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases # Organism: Streptococcus pyogenes M1 GAS # 113 571 3 475 484 261 38.0 3e-69 MKKSILFKKLGIILLISQTLVGVPMLAQESILETTVQTETESVTTETSQTVANLESETTS QTVMQEKESSSAIAESSSRNVVAVTTETTNEIQNSGTDGKAVSAESVFSEADYKQATALE LATLVREKKVTSEELVKIALAITKRENPTLNAVITLREEAALTEAKALQDTGQPFLGVPL LLKGLGQSLKGESNTNGFGFLRDQVAGGTSTFVKALQNAGFIIIGQTNYPELGWKNISDS KLYGVSVNPWNPNHYSGGSSGGAGASVAAAFVPIASGSDAGGSIRIPASWTGTVGLKPSR GVIIGNSNSAKGQTVHFGLSRTVADTNALFETLLTKKDLPAGHLSQAQPIAYTTESPAGT PVSAEAKEAVAEAVAFLKDQGYTLVEVKHPVDGERLMKNYYTVAAGSAGIADFMARQKLK RPLERNDVELLTWALFQTGKNITSEETTAAWTDIALQAQVMDEFYQQYPILLTPTTAATA PSIDNPLLKPEHAAQMEKIDQLSPAEQKQLIYDQWLTAFTYTPFTQQANLFGHPALSVPT YVSKEGLPLGIQFNSALNEDRTLLQLGALFENNHKINQPHVEEPDKDKEPDASGEPEKDK DPNASGEPDKDKEPDASGELAS >gi|307679218|gb|GL457029.1| GENE 4 4675 - 4815 126 46 aa, chain + ## HITS:1 COG:no KEGG:EF1033 NR:ns ## KEGG: EF1033 # Name: not_defined # Def: 6-aminohexanoate-cyclic-dimer hydrolase, putative # Organism: E.faecalis # Pathway: not_defined # 1 46 684 729 729 92 97.0 5e-18 MIGKQEQLPKKVLPKAGAEVPSTFWVVLGGAFLVTSGTIYIRKTRK >gi|307679218|gb|GL457029.1| GENE 5 4910 - 5839 836 309 aa, chain + ## HITS:1 COG:BH2734_1 KEGG:ns NR:ns ## COG: BH2734_1 COG3173 # Protein_GI_number: 15615297 # Func_class: R General function prediction only # Function: Predicted aminoglycoside phosphotransferase # Organism: Bacillus halodurans # 7 299 4 294 336 189 35.0 7e-48 MRAFEKIPAFQQWQKVEAIHRGWSTDLKFKVTKNQETFLLRIFQQEELLAKQQEYQFIKK VAALGFPSSKPFLCAPIPESEQGYMLLTYLEGEDLSDVLPALSPKRQLNLGVEAGRYLNK IHKLLLPERISQREIARNLYEKKQSQLNKYKESQFCMPYQQPIISYLEKQLPLLQQRPVV YQHGDFHVGNFIYLPTRQVGVIDFNRWDFGDPYEEFYKLQFFSRNVSPLFAYGQLQGYFA GKVPTLFWQFQKLYTFHAGLYSLVWALSFGEKEIRTMEQQYQQLLEDYNCGELLVPKWFS TIQRKGLRF >gi|307679218|gb|GL457029.1| GENE 6 5882 - 5995 146 37 aa, chain + ## HITS:1 COG:no KEGG:EF1035 NR:ns ## KEGG: EF1035 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 36 1 36 217 64 100.0 1e-09 MKLNGIIMIAVVGSVLSSCGWQKSKEESQKVQTVQTM >gi|307679218|gb|GL457029.1| GENE 7 5941 - 6531 557 196 aa, chain + ## HITS:1 COG:no KEGG:EF1035 NR:ns ## KEGG: EF1035 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 12 196 33 217 217 305 97.0 5e-82 MAKIERGITESTNRTNNVNTEETRAISATEVSQTTALELEQTTQTQELTELVTEEGTIWN QQKAKQLGQYMEIWGQERNQNYQAYQPGHSVAFYTIQVPDDLLSYEPKIQPAIGNNPIWL NWSETGSEGGYCLVAVYSDSATQVAQKHVYLFTLVNGEAKVYVSKEQPAEEQPYLFLKET SNTELKEQFTNLVNNL >gi|307679218|gb|GL457029.1| GENE 8 6650 - 7051 545 133 aa, chain + ## HITS:1 COG:BH1654 KEGG:ns NR:ns ## COG: BH1654 COG0105 # Protein_GI_number: 15614217 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside diphosphate kinase # Organism: Bacillus halodurans # 3 132 2 131 147 133 50.0 6e-32 MKETSLVIIKPDGVERKLVGKIIQRFEDKGIDLLHLKFERLTVETVKEHYEHLKDELFFP ELLAYMTSGPVVVMVVVGDNVVKKVRKLVGATNPLDAESGTLRADYGLSVTKNLIHASDS VQSAKIEMQRFFG >gi|307679218|gb|GL457029.1| GENE 9 7211 - 8821 1638 536 aa, chain + ## HITS:1 COG:MJ0001 KEGG:ns NR:ns ## COG: MJ0001 COG0436 # Protein_GI_number: 15668173 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Methanococcus jannaschii # 186 349 103 251 375 61 27.0 4e-09 MITSDELTENLSPFELSLFLEKKLHEENHNLETLLNAGRGNPNWTAPTPREAFFLLGQFA TKETLREGSEQTAGMIQPSFGRTQRFLNFLAENPSKGATFLQEIWTAEHNYFGMDKEMWL DAMLDYVIGDNYPNPVRCLKACEQPIKAYLNQELFSSEAQPFDIFAVEGGTAGICYLFDT LANNYLLEKGDRIALLLPTFAPYLEIPELPRYDFDVVKIKAEQMIIDGKTTYQYSNKEID KLKDPSIKAVFVVNPSNPTANAMGKPTIEQIKQIVAVDNPKLMILTDDVYGTFVPVFRSL FTELPYNTACIYSYSKYFGATGWRVGTIAVSQENIFDQLLKELPVARKMELQARYATLNA DTSQINFISRLVADSRDIALNHAAGLSSIQQAMMALFSLYALLKDGQAYKDEVMDICHTR EKLLFRTLGIEEPLASLNTAYYCEINFRDWTEKRYGPEFSSYLTKSWTITKVLTSLAEKE KLMLLKADAFGSDKWSVRISLANLATNQYSEVGKRMIRLSEHIKEEWLRQKRQAIK >gi|307679218|gb|GL457029.1| GENE 10 8964 - 10049 992 361 aa, chain + ## HITS:1 COG:no KEGG:EF1038 NR:ns ## KEGG: EF1038 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 361 1 361 361 640 98.0 0 MKHIKGMLVFIGLFVLVGCAPDQEPTKQTTSGPQETKQVKQVTVTNQTTSAVEKQAPAKN DELIANQLTFDSHEYTYEVVTGATQTTFGTTPPAKYTPEEKKEKMFWSNQPPLGLMTGNY YKNEGVFTGGNYGIVEIITEPETQRILNVEFTEFASDPYYDTRYSGVNKRLSDYPEFQAS NTRTDDTLVTVVNGITYVEKQMRDENRVTGNFYTVRGSSTSAREGLMPLAAEMDTWLKES SKETYIGYAEDLGNGLIGRLQVITEEQKIKHVSYDEYFSDEQEKITETALRPFYRQSKYY SPGYNKQTNNSFIHFVDALTKAITTQQTLSVNEEQELQHPSFTTYQRLAEKISTFQNSLK E >gi|307679218|gb|GL457029.1| GENE 11 10165 - 10968 987 267 aa, chain - ## HITS:1 COG:SP0286 KEGG:ns NR:ns ## COG: SP0286 COG0561 # Protein_GI_number: 15900220 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Streptococcus pneumoniae TIGR4 # 2 263 3 267 270 209 40.0 4e-54 MKKLIAIDLDGTTLNAQSLISPKTEQTLKKAIDNGHYVSIATGRPYRMSHQFYQQLGLTT PMVNFNGALVHIPEKKWDLESEANIERDLVFDILAQKKELQLDFVAAENKETFYIDTLDG FDPKFFASKATLDNLLTAKNLRTNPTSMMVRTTPNQAEKVADTLTKQYGDYIDVRTWGGP MPILEMVAKGIQKAHGVDQVANFLSVKPADIIAFGDEHNDEEMLSYAGWGVAMNNATDKI KSVANDVTEKTNDQDGLADYLENYLDL >gi|307679218|gb|GL457029.1| GENE 12 11120 - 11749 471 209 aa, chain + ## HITS:1 COG:lin2252 KEGG:ns NR:ns ## COG: lin2252 COG4330 # Protein_GI_number: 16801316 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 9 185 9 191 213 80 33.0 2e-15 MKNSRNYLRVITLIYCIYMWLFATHFHFMALNVLLAYIPIELSYLLNAEKRKRDWLIGFA WLIFYPNAPYLFTDFFHLETLSIYRGFNTIFANQIGDWWAFVCLTSGIVIYGLLGMKTVT TVSQKLQSYCDYRTIVVFQASLHFLSALAIYVGRFDRLHSVYLFMSPIETVKIIFFDWSL QKLMFILLMMFLQMLLFGLIQLLGKEEAM >gi|307679218|gb|GL457029.1| GENE 13 11901 - 13307 1663 468 aa, chain + ## HITS:1 COG:SPy1736 KEGG:ns NR:ns ## COG: SPy1736 COG2252 # Protein_GI_number: 15675585 # Func_class: R General function prediction only # Function: Permeases # Organism: Streptococcus pyogenes M1 GAS # 1 468 1 486 486 503 66.0 1e-142 MNTFFKLKENKTTVSTEIMAGVTTFFAMSYILFVNPSILSETGMPFQAVFLATIIASIIG TLIMGLFANVPYAQAPGMGLNAFFTFTVVFGMGYTWQQALAMVFICGLINILITVTKIRK MIIKAIPESLQHAIGGGIGIFVAYVGLKNAGLLSFTVQAEPQNGVVNGSSIVPALGNFDN PAIILAVIGLVLTTILVVTNVRGAILIGIVVTTLVAIPMGVVDTASVDWHANSLGNSFKE LGTTFGAAFGAEGLQSLFSDSSKIPQVLMTIIAFSLSDTFDTIGTFIGTGRRTGIFSKED ELALEDSKGFSTKMDKALFADAIATSIGAIFGTSNTTTYVESAAGIGAGGRTGLTSVVVA ILFALSSLFSPLIAIVPAQATAPALILVGIMMLASFKDINWTDLEDAIPAFFASIFMGLC YSISYGIAAGFIFYAVVKVVKGKAKEVSPIIWVIDALFILNFVILAIL >gi|307679218|gb|GL457029.1| GENE 14 13517 - 14713 945 398 aa, chain + ## HITS:1 COG:L60571 KEGG:ns NR:ns ## COG: L60571 COG0477 # Protein_GI_number: 15672648 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 3 397 7 401 405 431 57.0 1e-120 MKIKWKQNLLVAWIGCFFTGASISLVMPFIPVYVEQLGTPKSQVELFSGLAISVTAFAAA IVAPIWGNLADRKGRKIMMIRAAAGMTITMGALAFVPNVYWLLIMRFMNGILSGYIPNAT AMIASQAPKEKNGWALGTLSTGAIAGTLIAPSIGGALAQWFGMENVFIITGVILFITTLL TIFLVKEDFQPVEKKDLLTTKEIFSKMDHVSVLIGLFVTTLILQLGITSISPILTLYIRS LSGDTENVLFVSGLIVSIAGVSAIISSPTLGKIGDRIGNQKVLLGGLILSFICYIPMAFV QTPFQLGVLRFLLGFSTGALMPSINTLISKITPTEGVSRVYSYNQMCSNFGQVLGPMVGS TVAHGFGYSSVFLVTACFVLGNIGLSFFNFRKVLNKKL >gi|307679218|gb|GL457029.1| GENE 15 14768 - 14953 258 61 aa, chain - ## HITS:1 COG:no KEGG:EF1043 NR:ns ## KEGG: EF1043 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 61 1 61 61 101 100.0 1e-20 MRYLVVFFWTFALGQVVGYIGGALSGGSYDFKMTTILSLATAVIILLIAHFAVPKETKPV K >gi|307679218|gb|GL457029.1| GENE 16 15071 - 18400 3297 1109 aa, chain + ## HITS:1 COG:lin1609 KEGG:ns NR:ns ## COG: lin1609 COG0587 # Protein_GI_number: 16800677 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Listeria innocua # 1 1109 1 1108 1108 878 44.0 0 MSFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQ PIIGLRLEYTPAEKEGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFYLAEHQSLLSDLF AVTLSAKGEVAQTFFEDEQQAVHAFQQLASYFDPQSLFVEHSFSMNQQRNPALFSFYQRE QLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQTPEIEGLNYLREAETTMEQMLQ IAGAEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDNQTAGSYLRTLCLEKLPERVPHLNE VYQKRLEKELTIIHNMGFDDYFLIVWDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDV DPIKYDLLFERFLNPERYTMPDIDLDIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAK MVLRDVARVFGLSQSEANRWSAAVPNKLKITLEEAYQESKRMQELVNFSPNNQLLYKTAV QLEGLPRHVSTHAAGVVISDENLLNLVPLQLGSNEILLTQFTMNDVEKIGLLKMDFLGLR NLSIIDDTLTAVKRVYNQTIRLNQIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLG PTSIEDIAAVNALYRPGPMQNIDVFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIM QVAAKMAGFSLGQADILRRAISKKKKDVLDEERNHFVNGALQQGYPKETANQVYDYIERF ANYGFNRSHAFAYSFIGFQMAYLKVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTI LQPSINQSHYSFYLNQQQQILFGFSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDR KWLKVENIEPLIAIGAFDEIAPNRRQLAVGLESNIQSILLSGGSMDLLETLKPKEEEIAD YPLEERLEQEEQYLGVYLSGHPTEEFKKTRLAKQTQLVHELVENQPTKLLIYVKNIRTIR TKKGEQMAFVDGDDTTGSISLTLFPTVFRQLRQSVEKGQVYYVEGKVERSTYNQELQILV QRIEKAQQVETSISDETCFIRITKDVEQTDVFQKMKEVLSRHAGHIPVIVYFEKTGKKIV LNEENWVAHTSASQQQLAYVLGEQNVIFK >gi|307679218|gb|GL457029.1| GENE 17 18573 - 19535 1336 320 aa, chain + ## HITS:1 COG:lin1606 KEGG:ns NR:ns ## COG: lin1606 COG0205 # Protein_GI_number: 16800674 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphofructokinase # Organism: Listeria innocua # 1 314 1 313 319 439 71.0 1e-123 MKRIGILTSGGDAPGMNAAIRAVVRKSIFDGIEVYGINYGFAGLVAGDIRRLDVADVGDK IQRGGTFLYSARYPEFATEEGQLKGIEQLKKFGIEGLVVIGGDGSYHGAMALTKRGFPAV GIPGTIDNDIPGTDFTIGFDTAINTVLESIDRIRDTATSHVRTFVIEVMGRNAGDIALWS GVAGGADEIIIPEHDFDMKNVAKRIQEGRDRGKKHCLIILAEGVMGGNEFADKLSEYGDF HTRVSILGHVVRGGSPSARDRVLASKFGSYAVELLKEGKGGLCIGMLDNQVVAADIIDTL ENNKHKPDLSLYELNHEISF >gi|307679218|gb|GL457029.1| GENE 18 19600 - 21357 2423 585 aa, chain + ## HITS:1 COG:lin1605_1 KEGG:ns NR:ns ## COG: lin1605_1 COG0469 # Protein_GI_number: 16800673 # Func_class: G Carbohydrate transport and metabolism # Function: Pyruvate kinase # Organism: Listeria innocua # 1 475 1 475 475 683 77.0 0 MKKTKIVCTIGPASESVDMLVNLINAGMNVCRLNFSHGDYEEHGARIKNIREAVKITGKR VAILLDTKGPEIRTNDMENGAITMKIGDSVRISMTEVLGTNEKFSITYPELINDVNVGSH ILLDDGLIDLEVTYIDRDANEIVTVVKNEGVLKNKKGVNVPGVSVNLPGITEKDANDIRF GIGQGIDFIAASFVRRASDVLEITKILEEENATHIQIIPKIENQEGIDNIDEILKVSDGL MVARGDMGVEIPTEDVPVVQKALIKKCNALGKPVITATQMLDSMQRNPRPTRAEANDVAN AIYDGTDAVMLSGETAAGDYPLEAVQTMARIAVRTEETLVNQDSFALKLYSKTDMTEAIG QSVGHTARNLGIQTIVAATESGHTARMISKYRPKAHIVAITFSEQKARSLSLSWGVYATV ADKPSSTDEMFNLASKVSQEEGYASEGDLIIITAGVPVGEKGTTNLMKIQMIGSKLVQGQ GVGEEAIIAKAVVAGTAEEAVAKATEGAILVTKTTDKEYMPAIEKASALVVEEGGLTSHA AVVAIAQNIPVIVGAADATSLINNDEVITVDPRRGIVYRGATTAI >gi|307679218|gb|GL457029.1| GENE 19 21731 - 22300 625 189 aa, chain + ## HITS:1 COG:L39365 KEGG:ns NR:ns ## COG: L39365 COG1399 # Protein_GI_number: 15673577 # Func_class: R General function prediction only # Function: Predicted metal-binding, possibly nucleic acid-binding protein # Organism: Lactococcus lactis # 1 170 1 167 176 115 42.0 5e-26 MKWSLLELNKYKEEPLVFSETLHLKEELLQRDDTLLDVSPIKVEGLLAVNKSEYLLHYTI QVTVTVPSSRSLEPVALPMQITVDEVFMTKEQMDTRDERFAAEEIILLDKPTIDLDESVE DNILLSIPIQVLTEEEQNSQEMPSGNDWEVISEEAYLESKQKAAEQTVDPRLAKLSELLS DNAEEEDNS >gi|307679218|gb|GL457029.1| GENE 20 22357 - 22536 322 59 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375627|ref|NP_814781.1| 50S ribosomal protein L32 [Enterococcus faecalis V583] # 1 59 1 59 59 128 100 3e-29 MAVPARRTSKAKKAKRRTHYKLTIKGLNACSNCGEMKKSHHVCPACGHYDGKDVMSKEA >gi|307679218|gb|GL457029.1| GENE 21 22741 - 24162 1769 473 aa, chain + ## HITS:1 COG:SP0375 KEGG:ns NR:ns ## COG: SP0375 COG0362 # Protein_GI_number: 15900298 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconate dehydrogenase # Organism: Streptococcus pneumoniae TIGR4 # 1 473 1 474 474 790 80.0 0 MTKQQFGVVGMAVMGKNLALNIESRGYTVALYNRTGSKTTEVVEEHPDKNFQATYSIEEF VNAIEKPRRIMLMVKAGPATDATIQELLPHLDKGDILIDGGNTFFKDTMRRNEELANSGI NFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILEKISAKAEDGEPCVTYIGPNGAGH YVKMVHNGIEYGDMQLIAESYDLMKQILGLSVDEMAEIFKEWNEGELDSYLIEITADILT RKDDEGTDQPIVDVILDAAGNKGTGKWTSQSALDLGVPLPLITESVFARFISAYKEERVK ASGILSKPAAFNFAGDKKELIEKIREALYFSKLMSYAQGFAQLRAASEEYGWDLPFGEIA KIWRAGCIIRAQFLQKITDAYEKNPALENLLLDEYFVEITKKYQQAVREVVAIAVQAGVP VPTFSSAIAYYDSYRSDRLPANLIQAQRDYFGAHTYERTDKEGIYHYSWYNEE >gi|307679218|gb|GL457029.1| GENE 22 24320 - 25006 941 228 aa, chain + ## HITS:1 COG:lin1414 KEGG:ns NR:ns ## COG: lin1414 COG0745 # Protein_GI_number: 16800482 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 1 228 1 226 226 307 80.0 9e-84 MSNILIIEDEKNLARFVELELKHEGYTTEVHYNGRTGLEAALNNEWDAILLDLMLPELNG LEVCRRVRQVKNTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRID IEGDKNVAKQTTITYRDLTIEKENRVVRRNSEMIELTKREYELLLTLMENVNVVLARDVL LNKVWGYETEVETNVVDVYIRYLRNKIDVPGEESYIQTVRGTGYVMRS >gi|307679218|gb|GL457029.1| GENE 23 25017 - 26525 1404 502 aa, chain + ## HITS:1 COG:L0130 KEGG:ns NR:ns ## COG: L0130 COG0642 # Protein_GI_number: 15673575 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Lactococcus lactis # 2 491 11 488 491 330 39.0 3e-90 MKRTIKKELEGPSLTIKWAFASSFFIFVVFTIFAVITYKSSVSLIVAKEKENVEATIAEV TNRLANANENLTVTDVFDYLKTPSERDENYYNKHTAVEGSFMEMDSFISELGQPELYLSV YDTNQKLVFKTQNEYDKLLQLDRQLPVVQTVFDKTGFYSVEPIFSKETREKIGYIQAFYE LSSFYEIRNHLLLTLVVLEVISLIVSSVLGFILSSYFLKPLKVLRDTMDTIRKDPQSDVH MPEINTRDELADISEIFNEMLDRMRRYIEQQEQFVEDVSHELRTPVAIMEGHLNLLNRWG KDDPEILDESLKASLQEISRMKSLVQEMLDLSRAEQVDTQYANERTDAKQVVYQVFNNFQ LVYPEFHITLDDDLPTEVELKIYRNHFEQLLIILLDNAIKYSTDRKEVHISISRTMNEFE IAVQDFGEGITEEDLEKIFDRFYRVDKARARNKGGNGLGLSIAKQLVENYKGRIDAESVL HQGTIFRIFIPIAGIKEESNVQ Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:52:46 2011 Seq name: gi|307679217|gb|GL457030.1| Enterococcus faecalis TX2141 genomic scaffold Scfld104, whole genome shotgun sequence Length of sequence - 104569 bp Number of predicted genes - 111, with homology - 108 Number of transcription units - 52, operones - 31 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 88 121 ## EF1070 UDP-glucose 4-epimerase 2 1 Op 2 1/0.250 + CDS 100 - 1593 1621 ## COG4468 Galactose-1-phosphate uridyltransferase 3 1 Op 3 . + CDS 1600 - 2604 801 ## COG1609 Transcriptional regulators + Term 2605 - 2653 8.2 4 2 Op 1 . + CDS 2686 - 3180 335 ## EF1073 hypothetical protein 5 2 Op 2 . + CDS 3244 - 3507 331 ## EF1074 hypothetical protein + Term 3519 - 3552 1.4 6 3 Op 1 . + CDS 3580 - 4086 539 ## EF1075 acetyltransferase 7 3 Op 2 . + CDS 4117 - 4875 596 ## EF1076 streptomycin 3''-adenylyltransferase, putative 8 3 Op 3 6/0.000 + CDS 4899 - 5339 514 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 5492 - 5520 -0.9 + Prom 5345 - 5404 9.9 9 3 Op 4 . + CDS 5532 - 6686 1289 ## COG0477 Permeases of the major facilitator superfamily + Term 6696 - 6741 8.5 + Prom 6758 - 6817 7.9 10 4 Op 1 . + CDS 6838 - 8154 1307 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair 11 4 Op 2 . + CDS 8159 - 8548 531 ## EF1081 hypothetical protein + Prom 8556 - 8615 2.3 12 5 Op 1 . + CDS 8635 - 8817 324 ## EF1082 hypothetical protein 13 5 Op 2 . + CDS 8835 - 9140 398 ## EF1083 hypothetical protein 14 5 Op 3 . + CDS 9193 - 9624 463 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins 15 5 Op 4 . + CDS 9695 - 9937 242 ## EF1085 hypothetical protein + Prom 10068 - 10127 6.9 16 6 Tu 1 . + CDS 10307 - 10753 452 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 10762 - 10808 6.0 + Prom 10791 - 10850 7.0 17 7 Op 1 . + CDS 10893 - 11606 522 ## COG2761 Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis 18 7 Op 2 . + CDS 11677 - 12072 338 ## EF1089 hypothetical protein + Term 12108 - 12161 17.1 - Term 12094 - 12148 17.3 19 8 Tu 1 . - CDS 12258 - 13679 1191 ## EF1090 hypothetical protein - Prom 13807 - 13866 5.3 + Prom 13794 - 13853 9.8 20 9 Op 1 . + CDS 14007 - 17318 3296 ## COG4932 Predicted outer membrane protein 21 9 Op 2 . + CDS 17322 - 18752 1385 ## EF1092 cell wall surface anchor family protein 22 9 Op 3 . + CDS 18749 - 20632 2173 ## EF1093 cell wall surface anchor family protein + Term 20672 - 20708 2.5 23 10 Tu 1 . + CDS 20726 - 21583 849 ## COG3764 Sortase (surface protein transpeptidase) - Term 21451 - 21489 1.5 24 11 Op 1 . - CDS 21605 - 21790 97 ## gi|300859823|ref|ZP_07105911.1| conserved hypothetical protein - Prom 21821 - 21880 9.5 25 11 Op 2 . - CDS 21897 - 22190 187 ## EF1095 hypothetical protein - Prom 22243 - 22302 8.2 + Prom 22301 - 22360 2.6 26 12 Tu 1 . + CDS 22385 - 22588 408 ## COG2155 Uncharacterized conserved protein + Term 22639 - 22678 5.2 27 13 Tu 1 . + CDS 22948 - 23460 556 ## EF1097 hypothetical protein + Term 23667 - 23699 0.7 28 14 Tu 1 . - CDS 23580 - 23798 67 ## gi|257415712|ref|ZP_05592706.1| predicted protein - Prom 23901 - 23960 3.4 29 15 Tu 1 . - CDS 24003 - 24164 86 ## - Prom 24192 - 24251 3.8 - Term 24218 - 24266 10.1 30 16 Tu 1 . - CDS 24270 - 24575 368 ## EF1098 hypothetical protein - Prom 24596 - 24655 8.1 + Prom 24687 - 24746 4.6 31 17 Tu 1 . + CDS 24910 - 26511 1447 ## EF1099 collagen adhesin protein + Term 26515 - 26564 11.6 + Prom 26551 - 26610 1.7 32 18 Op 1 . + CDS 26636 - 28231 1291 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 33 18 Op 2 . + CDS 28301 - 29035 520 ## COG0500 SAM-dependent methyltransferases + Term 29096 - 29137 -0.8 - Term 28895 - 28931 -1.0 34 19 Tu 1 . - CDS 29032 - 29433 513 ## EF1102 hypothetical protein - Prom 29456 - 29515 7.6 - Term 29490 - 29528 3.0 35 20 Tu 1 . - CDS 29544 - 30896 1517 ## COG1113 Gamma-aminobutyrate permease and related permeases - Prom 31003 - 31062 12.0 - Term 31008 - 31066 14.3 36 21 Op 1 . - CDS 31067 - 31252 246 ## EF1104 hypothetical protein - Prom 31287 - 31346 9.5 - Term 31387 - 31429 11.2 37 21 Op 2 . - CDS 31433 - 31738 227 ## EF1105 hypothetical protein - Prom 31935 - 31994 10.1 + Prom 31589 - 31648 9.8 38 22 Tu 1 . + CDS 31862 - 31936 57 ## + Prom 31956 - 32015 1.9 39 23 Op 1 17/0.000 + CDS 32090 - 32851 918 ## COG0247 Fe-S oxidoreductase 40 23 Op 2 13/0.000 + CDS 32864 - 34336 1406 ## COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain 41 23 Op 3 . + CDS 34329 - 35048 920 ## COG1556 Uncharacterized conserved protein + Term 35056 - 35110 10.7 + Prom 35121 - 35180 6.2 42 24 Tu 1 . + CDS 35269 - 35817 685 ## COG0681 Signal peptidase I + Term 35838 - 35893 13.5 + Prom 35843 - 35902 5.2 43 25 Op 1 8/0.000 + CDS 35928 - 39518 3515 ## COG3857 ATP-dependent nuclease, subunit B 44 25 Op 2 . + CDS 39511 - 43305 3752 ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 45 25 Op 3 1/0.250 + CDS 43375 - 43719 396 ## COG1733 Predicted transcriptional regulators + Term 43964 - 44011 12.2 + Prom 43959 - 44018 7.9 46 26 Op 1 40/0.000 + CDS 44038 - 45084 1364 ## COG0016 Phenylalanyl-tRNA synthetase alpha subunit 47 26 Op 2 . + CDS 45092 - 47515 3090 ## COG0072 Phenylalanyl-tRNA synthetase beta subunit + Term 47531 - 47576 14.1 - Term 47605 - 47658 6.8 48 27 Op 1 17/0.000 - CDS 47713 - 48378 724 ## COG0765 ABC-type amino acid transport system, permease component 49 27 Op 2 31/0.000 - CDS 48390 - 49103 634 ## COG0765 ABC-type amino acid transport system, permease component 50 27 Op 3 16/0.000 - CDS 49149 - 49976 1099 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 51 27 Op 4 . - CDS 50011 - 50742 632 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 50851 - 50910 8.9 + Prom 50925 - 50984 4.2 52 28 Op 1 2/0.083 + CDS 51007 - 51834 825 ## COG0796 Glutamate racemase 53 28 Op 2 . + CDS 51827 - 53182 478 ## PROTEIN SUPPORTED gi|165937309|ref|ZP_02225873.1| non-canonical purine NTP pyrophosphatase RdgB 54 28 Op 3 . + CDS 53195 - 53707 561 ## COG0622 Predicted phosphoesterase + Term 53753 - 53808 18.1 - Term 53615 - 53652 -0.7 55 29 Tu 1 . - CDS 53801 - 54565 549 ## COG1349 Transcriptional regulators of sugar metabolism - Prom 54609 - 54668 6.3 + Prom 54660 - 54719 4.6 56 30 Op 1 . + CDS 54759 - 55826 1062 ## COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold 57 30 Op 2 2/0.083 + CDS 55844 - 56302 484 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 58 30 Op 3 . + CDS 56315 - 57802 1499 ## COG3037 Uncharacterized protein conserved in bacteria 59 30 Op 4 . + CDS 57817 - 58116 395 ## EF1128 phosphotransferase enzyme II, B compnent SgaB 60 30 Op 5 9/0.000 + CDS 58130 - 58768 842 ## COG0269 3-hexulose-6-phosphate synthase and related proteins 61 30 Op 6 8/0.000 + CDS 58773 - 59633 602 ## COG3623 Putative L-xylulose-5-phosphate 3-epimerase 62 30 Op 7 . + CDS 59623 - 60333 679 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases + Term 60391 - 60442 13.1 + Prom 60383 - 60442 7.9 63 31 Op 1 . + CDS 60590 - 61078 690 ## COG0517 FOG: CBS domain + Prom 61080 - 61139 3.2 64 31 Op 2 6/0.000 + CDS 61159 - 61860 969 ## COG2171 Tetrahydrodipicolinate N-succinyltransferase + Term 61875 - 61916 5.0 65 31 Op 3 . + CDS 61939 - 63066 1313 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase + Term 63072 - 63120 12.2 - Term 63058 - 63106 12.2 66 32 Tu 1 . - CDS 63111 - 64031 1013 ## COG0668 Small-conductance mechanosensitive channel - Prom 64160 - 64219 5.1 + Prom 64100 - 64159 15.8 67 33 Op 1 . + CDS 64201 - 64563 195 ## EF1137 hypothetical protein 68 33 Op 2 . + CDS 64640 - 65464 1117 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase + Term 65471 - 65530 8.4 - Term 65465 - 65514 11.2 69 34 Op 1 . - CDS 65515 - 65889 335 ## COG2071 Predicted glutamine amidotransferases - Prom 65915 - 65974 1.6 70 34 Op 2 . - CDS 66028 - 66198 203 ## EF1139 glutamine amidotransferase, class I - Prom 66229 - 66288 5.8 - Term 66299 - 66330 3.1 71 35 Tu 1 . - CDS 66379 - 66759 460 ## PROTEIN SUPPORTED gi|148984704|ref|ZP_01817972.1| 50S ribosomal protein L20 - Prom 66790 - 66849 3.0 + Prom 66735 - 66794 5.7 72 36 Tu 1 . + CDS 66902 - 67348 351 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes + Term 67358 - 67406 11.0 - Term 67339 - 67398 16.3 73 37 Op 1 3/0.083 - CDS 67412 - 68224 1038 ## COG0561 Predicted hydrolases of the HAD superfamily 74 37 Op 2 1/0.250 - CDS 68243 - 69613 1565 ## COG1078 HD superfamily phosphohydrolases 75 37 Op 3 . - CDS 69610 - 70461 794 ## COG0095 Lipoate-protein ligase A - Prom 70519 - 70578 5.5 + Prom 70458 - 70517 8.1 76 38 Op 1 . + CDS 70757 - 71194 622 ## COG4506 Uncharacterized protein conserved in bacteria + Term 71196 - 71241 1.1 77 38 Op 2 5/0.000 + CDS 71271 - 71888 937 ## COG3343 DNA-directed RNA polymerase, delta subunit + Term 71900 - 71937 6.4 + Prom 71966 - 72025 7.6 78 38 Op 3 . + CDS 72196 - 73806 2165 ## COG0504 CTP synthase (UTP-ammonia lyase) + Term 73807 - 73866 14.2 - Term 73801 - 73843 9.1 79 39 Op 1 7/0.000 - CDS 73847 - 76183 2392 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) 80 39 Op 2 . - CDS 76225 - 76842 360 ## COG3331 Penicillin-binding protein-related factor A, putative recombinase - Prom 76904 - 76963 3.7 + Prom 76754 - 76813 5.1 81 40 Op 1 6/0.000 + CDS 76905 - 77447 619 ## COG4474 Uncharacterized protein conserved in bacteria + Prom 77450 - 77509 2.2 82 40 Op 2 3/0.083 + CDS 77541 - 77951 527 ## COG3599 Cell division initiation protein + Term 78109 - 78145 -0.3 + Prom 78454 - 78513 7.1 83 41 Op 1 1/0.250 + CDS 78665 - 79828 1254 ## COG0116 Predicted N6-adenine-specific DNA methylase 84 41 Op 2 . + CDS 79847 - 81343 1807 ## COG2317 Zn-dependent carboxypeptidase 85 41 Op 3 6/0.000 + CDS 81376 - 82092 850 ## COG3935 Putative primosome component and related proteins 86 41 Op 4 . + CDS 82107 - 82754 167 ## PROTEIN SUPPORTED gi|46129221|ref|ZP_00155777.2| COG1194: A/G-specific DNA glycosylase + Term 82832 - 82891 14.4 + Prom 82778 - 82837 7.7 87 42 Op 1 . + CDS 82944 - 83708 740 ## COG2188 Transcriptional regulators 88 42 Op 2 . + CDS 83705 - 85003 1300 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases + Prom 85080 - 85139 9.7 89 43 Op 1 . + CDS 85173 - 86126 1074 ## COG1446 Asparaginase 90 43 Op 2 10/0.000 + CDS 86146 - 86475 566 ## COG1440 Phosphotransferase system cellobiose-specific component IIB 91 43 Op 3 . + CDS 86494 - 87849 1274 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 92 43 Op 4 . + CDS 87867 - 88385 559 ## EF1161 hypothetical protein + Term 88402 - 88459 14.5 + Prom 88423 - 88482 3.3 93 44 Op 1 . + CDS 88503 - 90884 1799 ## COG1199 Rad3-related DNA helicases 94 44 Op 2 . + CDS 90881 - 91846 1123 ## COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D 95 44 Op 3 . + CDS 91868 - 92551 647 ## EF1164 HD domain-containing protein - Term 92520 - 92562 10.1 96 45 Tu 1 . - CDS 92568 - 93062 700 ## COG1666 Uncharacterized protein conserved in bacteria - Prom 93151 - 93210 4.9 + Prom 93209 - 93268 4.9 97 46 Tu 1 . + CDS 93294 - 94250 893 ## COG1284 Uncharacterized conserved protein + Prom 94277 - 94336 6.9 98 47 Tu 1 . + CDS 94453 - 95322 1373 ## COG0191 Fructose/tagatose bisphosphate aldolase + Term 95341 - 95375 5.2 + Prom 95348 - 95407 11.2 99 48 Op 1 1/0.250 + CDS 95496 - 96788 1716 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase 100 48 Op 2 9/0.000 + CDS 96803 - 98077 1173 ## COG1158 Transcription termination factor 101 48 Op 3 . + CDS 98147 - 98446 532 ## PROTEIN SUPPORTED gi|227518426|ref|ZP_03948475.1| ribosomal protein L31 + Term 98479 - 98518 8.4 102 49 Tu 1 . - CDS 98716 - 98934 104 ## - Prom 99062 - 99121 10.8 + Prom 98548 - 98607 11.0 103 50 Op 1 1/0.250 + CDS 98838 - 99875 653 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC 104 50 Op 2 . + CDS 99865 - 100611 489 ## COG1922 Teichoic acid biosynthesis proteins 105 50 Op 3 . + CDS 100612 - 101205 353 ## EF1174 hypothetical protein 106 50 Op 4 . + CDS 101271 - 101669 405 ## COG0615 Cytidylyltransferase + Term 101670 - 101723 5.7 + Prom 101716 - 101775 3.1 107 51 Op 1 . + CDS 101808 - 102569 531 ## EF1176 hypothetical protein 108 51 Op 2 . + CDS 102574 - 102873 235 ## EF1176 hypothetical protein 109 51 Op 3 . + CDS 102866 - 103078 229 ## EF1177 hypothetical protein + Term 103087 - 103132 7.6 + Prom 103176 - 103235 6.4 110 52 Op 1 . + CDS 103305 - 104183 1163 ## COG1940 Transcriptional regulator/sugar kinase + Prom 104188 - 104247 4.6 111 52 Op 2 . + CDS 104274 - 104522 479 ## EF1180 hypothetical protein Predicted protein(s) >gi|307679217|gb|GL457030.1| GENE 1 2 - 88 121 28 aa, chain + ## HITS:1 COG:no KEGG:EF1070 NR:ns ## KEGG: EF1070 # Name: galE-1 # Def: UDP-glucose 4-epimerase # Organism: E.faecalis # Pathway: Galactose metabolism [PATH:efa00052]; Amino sugar and nucleotide sugar metabolism [PATH:efa00520]; Metabolic pathways [PATH:efa01100] # 1 28 302 329 329 67 100.0 2e-10 WQPEVTEVKDIIATAWQWHVKHPQGYNE >gi|307679217|gb|GL457030.1| GENE 2 100 - 1593 1621 497 aa, chain + ## HITS:1 COG:SP1829 KEGG:ns NR:ns ## COG: SP1829 COG4468 # Protein_GI_number: 15901658 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose-1-phosphate uridyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 9 494 5 488 491 533 54.0 1e-151 MMKESSKWIAAFVEIIIENGDWTETDRYYLTNRIAKLVGCDFFEQPEAVACEQEPLRVVE HLLNIAQANHQIDDSITEAEQLEAELMDFITPTPTIINQKFMDYYQESPRKATDYFYQLC KTNNYIKTKAIAKNIIFPMDSPYGKLEITINLSKPEKDARKILAEKKMSQKKYPACMLCM ENEGYYGRVNYPARTNHRIIRLNLEDEAWGFQYSPYAYYNEHAIFLDQQHREMKIEKKTF QRLLKITELFPEYFVGSNADLPIVGGSILSHDHYQAGRHTFPMDLAPMEKRFSLKKYPEI TAGILKWPMSVIRLQSDRQEELVEAAELILTKWRNYSDERVSVRAYSEDGTPHHTITPIA RRKGSLFELDLVLRDNNVSEEFPDGIFHPHPEVQHIKQENIGLIEVMGLAILPPRLAQEL REVEKYLLKQPNQIAESHRAWADELSQQTITEANVKEVIQQGIGTIFVQILTDAGVFKRD EEGRRAFERFIQCIEND >gi|307679217|gb|GL457030.1| GENE 3 1600 - 2604 801 334 aa, chain + ## HITS:1 COG:SP1854 KEGG:ns NR:ns ## COG: SP1854 COG1609 # Protein_GI_number: 15901682 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 4 329 1 331 335 248 40.0 2e-65 MRNIVTIKDIAEQVGVSSATVSRVLNYDETLSVSDETKKKIFETAETLNYKKRARKKQAG KKKIRFVQWFSDPEELDDIYYLSIRLGVEKRAEELGFLLVKESLTNLSQKRFDGTIALGK FDEKQVAALAALGAPLLFVDFDAMAFGQNSIVVDFAGSVKTIVQEFLAQGHQKIGMLSGQ EYTKESHVALVDPRFVAFKETLKDLDLYHQEWVVEAAFSVEEGYQAMKDFIEEADTRPTA FFAASDTLAIGAMRALQEAAIRVPEDISIIGFNDISVAKYVSPTLTTVKVHTEWMGELAV ETMKELCLNPPPVPRKIIVGTEFIQRDSTKHSSK >gi|307679217|gb|GL457030.1| GENE 4 2686 - 3180 335 164 aa, chain + ## HITS:1 COG:no KEGG:EF1073 NR:ns ## KEGG: EF1073 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 164 1 164 164 300 98.0 1e-80 MQPKLIILRGNSGSGKTTIANALHQCLKEQSLLISQDVVRREMLRVKDETGNLSIALLKQ LVAFGYQECQYVIVEGIFQKAIYHSFFQEIIHLFEGNVQVYYFDISFEETLKRHSQRNKN QEFGVVEMKRWWLPEDYLGLAGEQRLSEQLSEKQIIRQILADIQ >gi|307679217|gb|GL457030.1| GENE 5 3244 - 3507 331 87 aa, chain + ## HITS:1 COG:no KEGG:EF1074 NR:ns ## KEGG: EF1074 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 87 1 87 90 172 97.0 6e-42 MDYQERLKNLPPEVMTAFSESFIFLISNDKVQHFPARDLTQAEMIQRVKEKLGEAVTWSL WQGFVIAVNSEKTCVAVLPKYHQLDGF >gi|307679217|gb|GL457030.1| GENE 6 3580 - 4086 539 168 aa, chain + ## HITS:1 COG:no KEGG:EF1075 NR:ns ## KEGG: EF1075 # Name: not_defined # Def: acetyltransferase # Organism: E.faecalis # Pathway: not_defined # 1 168 1 168 168 327 99.0 8e-89 MSELVVIREMQEKDILALDTQFVQQGWPSRQEIVMNYLEEQLVKQRTVFVAEKKATLLGY VTLLPLAKEGPFKNLYPEIADFNVFLPFQKQGVGRLLLNRAENVAKSYADTVSLGVGLHP GYGAAQRLYIKQGYVPDGSGVWFQNKQLKPNERCVNDDELVLYLSKKL >gi|307679217|gb|GL457030.1| GENE 7 4117 - 4875 596 252 aa, chain + ## HITS:1 COG:no KEGG:EF1076 NR:ns ## KEGG: EF1076 # Name: not_defined # Def: streptomycin 3''-adenylyltransferase, putative # Organism: E.faecalis # Pathway: not_defined # 1 252 10 261 261 488 98.0 1e-137 MVHQLLAQMENGYMKIIKENLVGIYLHGSYAFGTYCHSVSDLDVLIVVYEKLTIDEKKQL LDYTINILDKWAPKKGIEFHVLQLKDTINLSYPIPFDLHFSPIHRSRYLTNKNKYIEDMM GYDEDLVAHLMITKLYGKVLVGKPIDSVFGWIDQKKYFESIVADVKEAKKEIVQQPMYVI LNLCRVMAFKQENKILSKRAGGEWGLVHFPTNYHSLIQLALKEYRGETVLLEQYNDSELN DFADITLSLLFK >gi|307679217|gb|GL457030.1| GENE 8 4899 - 5339 514 146 aa, chain + ## HITS:1 COG:SP1023 KEGG:ns NR:ns ## COG: SP1023 COG0454 # Protein_GI_number: 15900894 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Streptococcus pneumoniae TIGR4 # 1 142 1 141 143 125 46.0 2e-29 MIRKMKPTDAAALTIINKEQLGYEVPVDVTCKQIEKLLLASDREFLYVYEETKTGKILGY VHAQLYETIYSQTLLNVLGLAVAKEAEGRGIGKQLMMKLETEAKKYNLSAIRLNSGEQRT AAHQFYEHIGYVSDKKQKRFIKYLDT >gi|307679217|gb|GL457030.1| GENE 9 5532 - 6686 1289 384 aa, chain + ## HITS:1 COG:L125116 KEGG:ns NR:ns ## COG: L125116 COG0477 # Protein_GI_number: 15672105 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 1 381 1 381 387 504 81.0 1e-143 MTKKNSMMYLAISNLFLVFLGVGLVIPVIPQLKEEMHFSGTTMGMMISIFAIAQLITSPI AGVLSDKIGRKKMIATGMLVFSISELLFGLAQAKSGFYISRGLGGIAAALLMPSVTAFVA DMTTISERPKAMGLVSAAISGGFIIGPGVGGFIAYLGIRAPFFAAAFLAFIGFILTLTVL KEPEKRILAAVEAKKGSFMDILRNPMFTSLFVIILISSFGLQAFESIYSIMATINFGFTT SEIAIVITVSGILALICQLFFFDAIVQKIGEMGLIQLTFFASAIFIAVIAFTKNNLVVVF STFIVFLAFDLFRPAVTTYLSKHAGDQQGTINGLNSTFTSFGNILGPMAAGALFDINHFF PYYVSAVILLGTGFLSLFLNRNKM >gi|307679217|gb|GL457030.1| GENE 10 6838 - 8154 1307 438 aa, chain + ## HITS:1 COG:pli0067 KEGG:ns NR:ns ## COG: pli0067 COG0389 # Protein_GI_number: 18450349 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Listeria innocua # 4 431 6 426 426 388 47.0 1e-107 MKFDYEKEPSRDILCIDCKSFYASVECAERGLDPLKTMLVVMSNAENAGGLVLSASPMAK KVLGVSNVTRKNQVPAHPDLYVVPPRMNLYMKKNQEINNLYKKFVADEDHSVFSVDESFL DVTASLSYFHCETAYKMARIIQRVVYNHVGIYVTVGIGDNPLLAKLALDNGAKHSPDFIA EWRYDRVPDTVWQLPSLTDFCGIGRRMAKRLNRLGIDSVYELAQANPHLLQETFGVMGLQ LYAHSWGIDRTFLGKKAPHKAEKSFGNSQILPRDYARRDQIELVLKELTEQVATRLRKAH CQTECITVYVGYSKGQIDREGRTGWRKQQTIPATNNTKVLITYVLALFREHYLAGTDVRQ LGLSYGKLVWNESLQLDLFSEPEEQISEMELNYLIDKIRQKFGFQALIHASSLLEGATAI HRSGLVGGHAGGNVGLGG >gi|307679217|gb|GL457030.1| GENE 11 8159 - 8548 531 129 aa, chain + ## HITS:1 COG:no KEGG:EF1081 NR:ns ## KEGG: EF1081 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 129 1 129 129 232 99.0 3e-60 MKRTKKEFTPYNEYHDRPFELKWATAFALGELQEGIEASDEYSKRAFERLPQQTTEEIEE YLEQSLKNNQVLEIQLNTLDDFGRVQPPIVGVFEGMSSMEYAKVGHTHILFEEIRHIKSH EFTKWSSLD >gi|307679217|gb|GL457030.1| GENE 12 8635 - 8817 324 60 aa, chain + ## HITS:1 COG:no KEGG:EF1082 NR:ns ## KEGG: EF1082 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 60 1 60 60 80 98.0 2e-14 MGHHLKGHHGKKTNENGGFLTKLLAGGALVGVGKKLYDNREKIKELLSDDKEKGNDTENK >gi|307679217|gb|GL457030.1| GENE 13 8835 - 9140 398 101 aa, chain + ## HITS:1 COG:no KEGG:EF1083 NR:ns ## KEGG: EF1083 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 101 1 101 101 159 100.0 3e-38 MVKDAAYIIEEITTILEGTYFVITKKANKRRMCLHVSDTAKEFLRCRLEYETFLEQQFDY ATMFLETCTEDVSVEIQTGLLEETNYQALTVEKLQQIATKM >gi|307679217|gb|GL457030.1| GENE 14 9193 - 9624 463 143 aa, chain + ## HITS:1 COG:BH3184 KEGG:ns NR:ns ## COG: BH3184 COG0589 # Protein_GI_number: 15615746 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Bacillus halodurans # 3 143 1 141 147 100 37.0 1e-21 MSVYQHILVALDGSDQSEKAFHEAVRIAKEEQATLYLATIINDAEFTTSPFSFEELYDLE KHKSEEMLTEKAKQASEIGVKTVKKIVELGSPKRYLANTISENYAIDLIVLGATGRGAIQ RTLIGSTTDYVVNHALCNALVVR >gi|307679217|gb|GL457030.1| GENE 15 9695 - 9937 242 80 aa, chain + ## HITS:1 COG:no KEGG:EF1085 NR:ns ## KEGG: EF1085 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 80 1 80 80 107 100.0 2e-22 MKTKIGKTVILSAFLFTSFLLLSGCTSAGEEMEKTIDRQKEKVDKTVDKQKHKNENSMES YDEKVDRSLDSQEDKIDTTE >gi|307679217|gb|GL457030.1| GENE 16 10307 - 10753 452 148 aa, chain + ## HITS:1 COG:BS_bltD KEGG:ns NR:ns ## COG: BS_bltD COG0454 # Protein_GI_number: 16079713 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Bacillus subtilis # 1 141 1 148 152 128 44.0 4e-30 MEIHFEKVTSDNRKAVENLQVFAEQQTFIESMAENLKESDQFPEWESAGIYDGNQLIGYA MYGRWQDGRVWLDRFLIDQRFQGQGYGKAACRLLMLKLIEKYQTNKLYLSVYDTNSSAIR LYQQLGFVFNGELDTNGERVMEWTHQNK >gi|307679217|gb|GL457030.1| GENE 17 10893 - 11606 522 237 aa, chain + ## HITS:1 COG:SSO1074 KEGG:ns NR:ns ## COG: SSO1074 COG2761 # Protein_GI_number: 15897941 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis # Organism: Sulfolobus solfataricus # 1 206 3 208 225 92 29.0 1e-18 MKIEFFHDVICSFCFPMSDRMHEIQQEFPEIELIHRSFALGWSANDFETMFGSRAAVKEE VLTHWVHANQNDSKHRFNIEGMRKQRFDFPTSKNALLAAKAAGYIGNQDTYWLLFDKLQE GLFMRSLNIEEPEVIEELVKETTIDFALWKEAVASEAVWTAVQEDFALASAYGLQGVPAL IINQKYLINGAVPKQQISQTIQKILAEEKQQQPLVSLTPSSEESASCEFKEGTWTCH >gi|307679217|gb|GL457030.1| GENE 18 11677 - 12072 338 131 aa, chain + ## HITS:1 COG:no KEGG:EF1089 NR:ns ## KEGG: EF1089 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 131 1 131 131 225 100.0 4e-58 MFNAYREYWNNITTMNASATRAQYWWPQLINYLVLGIYSAITGVYRYIEVTPNDGTIIKE WNTVTIIFFLLTALIWLANFTVRARRLHDRDHSNWWILFYLLPFIGTLVIFITLILPSKS HTRWPVNQSEI >gi|307679217|gb|GL457030.1| GENE 19 12258 - 13679 1191 473 aa, chain - ## HITS:1 COG:no KEGG:EF1090 NR:ns ## KEGG: EF1090 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 473 1 473 473 852 99.0 0 MIRFLEKNYRKMEEIIRVLSISDKWMTKKELAKYIGSSESTFIRYIEEIKQRWGESLTIK TSHKLGYRLENFNVSLYLNVLTDMAKTSTTTQLLHEFIQNPGKTIEYYCDTINISRSSFA RKLKQCNQVLETYSLRVIVDQGYQLTSQTEELPLRIFTTFFFLMYYGHYELPYQLDKQEI KQLMRRNQCQLNIISMDNSYEHDFFIMYFIVDLLREHQGFQQRFQKKTDKKSPIKMEDYL LLSRHFTGLSRETYREVLRYFQRGAFQQYYSEDQEVISQRIRENLKFNAFSQIEQLTEEV VDFAVHLLTCLYLFSQLVPFDTSELTQRATFFTRQIHFTQLHLYTRLKAELHFFSALLET NLLNYSSSYIFWLLNTFPEINQSFDSKKILIISDMGLNHSQYIGNYVHDILALHRIRSNT LAITEEQLGDHRLEEFDLIITNQPIIETSVPSILINDAILFSNKRELLDLLNF >gi|307679217|gb|GL457030.1| GENE 20 14007 - 17318 3296 1103 aa, chain + ## HITS:1 COG:BH0361 KEGG:ns NR:ns ## COG: BH0361 COG4932 # Protein_GI_number: 15612924 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Bacillus halodurans # 743 1033 1087 1356 1661 73 29.0 2e-12 MITDENDKTNINIELNLLNQTEQPLQREIQLKNAQFMDTAVIEKDGYSYQVTNGTLYLTL DAQVKKPVQLSLAVEQSSLQTAQPPKLLYENNEYDVSVTSEKITVEDSAKESTEPEKITV PENTKETNKNDSAPEKTEQPTATEEVTNPFAEARMAPATLRANLALPLIAPQYTTDNSGT YPTANWQPTGNQNVLNHQGNKDGSAQWDGQTSWNGDPTNRTNSYIEYGGTGDQADYAIRK YARETTTPGLFDVYLNVRGNVQKEITPLDLVLVVDWSGSMNENNRIGEVQKGVNRFVDTL ADSGITNNINMGYVGYSSDGYNNNAIQMGPFDTVKNPIKNITPSSTRGGTFTQKALRDAG DMLATPNGHKKVIVLLTDGVPTFSYKVSRVQTEADGRFYGTQFTNRQDQPGSTSYISGSY NAPDQNNINKRINSTFIATIGEAMALKQRGIEIHGLGIQLQSDPRANLSKQQVEDKMREM VSADENGDLYYESADYAPDISDYLAKKAVQISGTVVNGKVVDPIAEPFKYEPNTLSMKSV GPVQVQTLPEVSLTGATINSNEIYLGKGQEIQIHYQVRIQTESENFKPDFWYQMNGRTTF QPLATAPEKVDFGVPSGKAPGVKLNVKKIWEEYDQDPISRPDNVIYEISRKQVTDTANWQ TGYIKLSKPENDTSNSWERKNVTQLSKTADESYQEVLGLPQYNNQGQAFNYQTTRELAVP GYSQEKIDDTTWKNTKQFKPLDLKVIKNSSSGEKNLVGAVFELSGKNVQTTLVDNKDGSY SLPKDVRLQKGERYILTEVKAPAGHELGKKTTWQIEVNEQGKVSIDGQEVTTTNQVIPLE IENKFSSLPIRIRKYTMQNGKQVNLAEATFALQRKNAQGSYQTVATQKTDTAGLSYFKIS EPGEYRMVEQSGPLGYDTLAGNYEFTVDKYGKIHYAGKNIEENAPEWTLTHQNNLKPFDL TVHKKADNQTPLKGAKFRLTGPDTDIELPKDGKETDTFVFENLKPGKYVLTETFTPEGYQ GLKEPIELIIREDGSVTIDGEKVADVLISGEKNNQITLDVTNQAKVPLPETGGIGRLWFY LIAISTFVIAGVYLFIRRPEGSV >gi|307679217|gb|GL457030.1| GENE 21 17322 - 18752 1385 476 aa, chain + ## HITS:1 COG:no KEGG:EF1092 NR:ns ## KEGG: EF1092 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 476 1 476 476 862 98.0 0 MKNARWLSICVMLLALFGFSQQALAEASQASVQVTLHKLLFPDGQLPEQQQNTGEEGTLL QNYRGLNDVTYQVYDVTDPFYQLRSEGKTVQEAQRQLAETGAMNRKPIAEDKTQTINGED GVVSFSLASKDSQQRDKAYLFVEAEAPEVVKEKASNLVVILPVQDPQGQSLTHIHLYPKN EENAYDLPPLEKTVLDKQQGFNQGEHINYQLTTQIPANILGYQEFRLSDKADTTLTLLPE SIEVKVAGKTVTTGYTLTTQKHGFTLDFSIKDLQNFANQTMTVSYQMRLEKTAEPDTAIN NEGQLVTDKHTLTKRAAVRTGGKSFVKVDSENAKITLPEAAFIVKNQAGEYLNETANRYR WQKEKALAKKFTSNQAGEFSVKGLKDGQYFLEEISAPKGYLLNQTEIPFTVEKNSYATNG QRTAPLHVINKKVKESGFLPKTNEERSIWLTIAGLLIIGMVVIWLFYQKQKRGERK >gi|307679217|gb|GL457030.1| GENE 22 18749 - 20632 2173 627 aa, chain + ## HITS:1 COG:no KEGG:EF1093 NR:ns ## KEGG: EF1093 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 627 1 625 625 1109 99.0 0 MKQLKKVWYTISTLLLILPLFTSVLGTTTAFAEENGESAQLVIHKKKMTDLPDPLIQNSG KEMSEFDKYQGLADVTFSIYNVTSEFYEQRAAGASVDAAKQAVQSLTPGKPVAQGTTDAN GNVTVQLPKKQNGKDAVYTIKEEPKEGVVAATNMVVAFPVYEMIKQADGSYKYGTEELAV VHIYPKNVVANDGSLHVKKVGTAENEGLNGAEFVISKSEGSPGTVKYIQGVKDGLYTWTT DKEQAKRFITGKSYEIGENDFTEAENGTGELTVKNLEVGSYILEEVKAPNNAELIENQTK TPFTIEANNQTPVEKTVKNDTSKVDKTTPSLDGKDVAIGEKIKYQISVNIPLGIADKEGD ANKYVKFNLVDKHDAALTFDNVTSGEYAYALYDGDTVIAPENYQVTEQANGFTVAVNPAY IPTLTPGGTLKFVYFMHLNEKADPTKGFKNEANVDNGHTDDQTPPTVEVVTGGKRFIKVD GDVTATQALAGASFVVRDQNSDTANYLKIDETTKAATWVKTKAEATTFTTTADGLVDITG LKYGTYYLEETVAPDDYVLLTNRIEFVVNEQSYGTTENLVSPEKVPNKHKGTLPSTGGKG IYVYLGSGAVLLLIAGVYFARRRKENA >gi|307679217|gb|GL457030.1| GENE 23 20726 - 21583 849 285 aa, chain + ## HITS:1 COG:SP0466 KEGG:ns NR:ns ## COG: SP0466 COG3764 # Protein_GI_number: 15900382 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Streptococcus pneumoniae TIGR4 # 22 283 1 257 279 180 40.0 2e-45 MKSKKKRRIIDGFMILLLIIGIGAFAYPFVSDALNNYLDQQIIAHYQAKASQENTKEMAE LQEKMEKKNQELAKKGSNPGLDPFSETQKTTKKPDKSYFESHTIGVLTIPKINVRLPIFD KTNALLLEKGSSLLEGTSYPTGGANTHAVISGHRGLPQAKLFTDLPELKKGDEFYIEVNG KTLAYQVDQIKTVEPTDTKDLHIESGQDLVTLLTCTPYMINSHRLLVRGHRIPYQPEKAA AGMKKVAQQQNLLLWTLLLIACALIISGFIIWYKRRKKTTRKHGN >gi|307679217|gb|GL457030.1| GENE 24 21605 - 21790 97 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|300859823|ref|ZP_07105911.1| ## NR: gi|300859823|ref|ZP_07105911.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9512_01380 [Enterococcus faecalis TX0635] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9512_01380 [Enterococcus faecalis TX0635] hypothetical protein HMPREF9497_00598 [Enterococcus faecalis TX4244] # 1 61 1 61 61 109 100.0 6e-23 MALTDFLGFSIIHQTPVLDTYYSQQPLTTRMLISSGLHFCTYFCLGLVIDLLRKGFKKIK T >gi|307679217|gb|GL457030.1| GENE 25 21897 - 22190 187 97 aa, chain - ## HITS:1 COG:no KEGG:EF1095 NR:ns ## KEGG: EF1095 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 97 1 97 97 125 100.0 5e-28 MRAKLFLILRNRVLSRVVFVILFLHVLFTTNDFTVLLLLLLLNYLLTLEDSAKKNRKIQT WQEFKQSIDWPFVAFYSGLALLVISLILLFLWFNYAR >gi|307679217|gb|GL457030.1| GENE 26 22385 - 22588 408 67 aa, chain + ## HITS:1 COG:CAC0976 KEGG:ns NR:ns ## COG: CAC0976 COG2155 # Protein_GI_number: 15894263 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 1 61 1 60 69 57 57.0 5e-09 MKYLDIIALILLIVGGLNWLLVGAFNFDLVATISGGATTPLAKIIYIIVGICAIYSIKFL APLFREP >gi|307679217|gb|GL457030.1| GENE 27 22948 - 23460 556 170 aa, chain + ## HITS:1 COG:no KEGG:EF1097 NR:ns ## KEGG: EF1097 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 170 1 170 170 288 100.0 6e-77 MELQVTKKAKFFCLAMALLMTLGIFISAGTSVYASDQLEDSEVEAVAKGLEEMYANGVTE DNFKNYVKNNFAQQEISSVEEELNVNISDASTVVQARFNWNALGSCVANKIKDEFFAMIS ISAIVKAAQKKAWKELAVTVLRFAKANGLKTNAIIVAGQLALWAVQCGLS >gi|307679217|gb|GL457030.1| GENE 28 23580 - 23798 67 72 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|257415712|ref|ZP_05592706.1| ## NR: gi|257415712|ref|ZP_05592706.1| predicted protein [Enterococcus faecalis AR01/DG] predicted protein [Enterococcus faecalis ARO1/DG] # 1 72 1 72 72 127 100.0 2e-28 MDAGSTPAVSIFRKVEKNKKELKPYKIKVLALFFYKQEKARYLLLHFLSHYLSKTTSFSF SIGDFGYCIEHG >gi|307679217|gb|GL457030.1| GENE 29 24003 - 24164 86 53 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MISIKGYLCYFGGVTDSTGIVELELRFVGYGYVKTLQLNITAKNENNSFALAA >gi|307679217|gb|GL457030.1| GENE 30 24270 - 24575 368 101 aa, chain - ## HITS:1 COG:no KEGG:EF1098 NR:ns ## KEGG: EF1098 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 101 1 101 101 174 100.0 1e-42 MKNSYFDGGLATYIGTSILATLITVFTLGICAPWGICMMYNWKIKHTVIDGKRLYFDGTA MQLFGHWIKWLLLTIITLGIYGFWLNIRLQQWITKHTHTLS >gi|307679217|gb|GL457030.1| GENE 31 24910 - 26511 1447 533 aa, chain + ## HITS:1 COG:no KEGG:EF1099 NR:ns ## KEGG: EF1099 # Name: not_defined # Def: collagen adhesin protein # Organism: E.faecalis # Pathway: not_defined # 1 466 1 477 674 696 90.0 0 MTKSVKFLVLLLVMILPIAGALLIGPISFGAELSKSPIVDKVELDHTTLYQGEMTSIKVS FSDKENQKIKPGDTITLTLPNALVGMTENDGSPRKINLNGLGEVFIYKDHVVATFNEKVE SLHNVNGHFSFGIKTLITNSSQPNVIETDFGTATATQRLTIEGVTNTETGQIERDYPFFY KVGDLAGESNQVRWFLNVNLNKSDVTEDISIADRQGSGQQLNKESFTFDIVNDKETKYIS LAEFEQQGYGKIDFVTDNDFNLRFYQDKARFTSFIVRYTSTITEAGQHQATFENSYDINY QLNNQDATNEKNTSQVKNVFVEGEASGNQNVEMPTEESLDIPLETIEEWEPKTPTSEQAT ETSEKTDTTETAESSQPEVHVSPTEEENPDESETLGTIAPILPEKPSVTTEENGTTETAE SSQSEVHVSPTKEITITEKKQPSTETTVETNKTITSKNQPQILNAPLNTLKNEGSPQLAP QLLSEPIQKLNEANGQRELPKTGTTKTPFMLIARILASTFAVLGVSYLQIRKN >gi|307679217|gb|GL457030.1| GENE 32 26636 - 28231 1291 531 aa, chain + ## HITS:1 COG:jhp0343 KEGG:ns NR:ns ## COG: jhp0343 COG1132 # Protein_GI_number: 15611411 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Helicobacter pylori J99 # 2 529 9 543 551 157 25.0 5e-38 MTKKIWSHFQKSFTWYILIGVIVSLCSALAIYFFQQLLDHYQKSFQLGLLVAYGTTIILI PLLSYCEQKPKAYLTNGIYFYLKKLSLIKMSKISYEEYLKLGAGALLQKVEVGAAAGRNI HLNFYGRLFRELIPETLFNLFFIALIDKKLLPAILIGYVIVFILTKILLKTLQKMKEKTL ISEEAMNATLIRGMTELVTFRINRKYKKEIENYALMAEENSQNITKMTMIHEFFFGFFAL LVALIKVSIVVLSFTNVVTLSLGGLVAIVMYIDRIYTPIAIFNVLFVQYNLDKVAYQRLE DFYKKEDDPDLMVSGKALPEIQTISLKDVCFSVDSQTIMSQQNRQFSMNKTYGLIGKSGT GKSTLIKLILGLLKPTEGTVYVNQFPLTQFNLEDYYEKVFYLSQDVPIFQGTLKENIVFN QEISDEQVIEAMYRFQLGELYERLPEGLNTIVSEKGMNFSGGEKQRIAFTRLAFTQAEIL ILDEATSALDEKTEEKVLQEVQKFTHNKLTILVTHRPKTLRFVDEIIDLNE >gi|307679217|gb|GL457030.1| GENE 33 28301 - 29035 520 244 aa, chain + ## HITS:1 COG:L103246 KEGG:ns NR:ns ## COG: L103246 COG0500 # Protein_GI_number: 15673455 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Lactococcus lactis # 1 233 1 242 247 148 39.0 9e-36 MNNNEQELAEFWDEFAEEYEEIQQESPFPIARELRDFLVQEGIFPCQTFLDIAGGTGRYL PFFQEQVTEYTLADISQRMLEIAEAKAQSNVVFLHQSQERLIETGKKFQVVFSAMNPALD TPEKVNALCQLSEKWCLIFRLVEEQDSLFSPFEQESNPQLKWMAKYKAFLKKEQRPFFTK KFFFEASEAISKDFFRSYFEEQWSVPILEQRVQEIFGSHEIKQNQRTIIYELIAIPCKKT TSDD >gi|307679217|gb|GL457030.1| GENE 34 29032 - 29433 513 133 aa, chain - ## HITS:1 COG:no KEGG:EF1102 NR:ns ## KEGG: EF1102 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 133 1 133 133 238 99.0 4e-62 MKKIGAILFIGLFIVGGYTGYRYYADTYKSEKAYAQVPLEIPERKQTVDDNQKSIDGQYS LHYRLTFVKSNGKTQVMDYERTDKNPQPLEPNAYIEATISKKRIIQSPVKIDKKEIPEKA FAQLNNRKTTSDN >gi|307679217|gb|GL457030.1| GENE 35 29544 - 30896 1517 450 aa, chain - ## HITS:1 COG:L18622 KEGG:ns NR:ns ## COG: L18622 COG1113 # Protein_GI_number: 15672791 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Lactococcus lactis # 3 443 2 441 446 541 71.0 1e-154 MSETQQTTLKKQLSSRHITMLALGGAIGAGLFKGSGEAIGIAGPSVLIAFLIGGAVLFIV MSGLGKLVLDGGDTHHGLSGLVRPFLGAHSADFIDWVYYSMWTINIIAEAVAAASFLQLW FPNIPAWFFVFILAILTTLINLYSVRLFAETEYWLAFAKISVIILLIIFGVYLVGQQMLG SGVFPTLQSITKHGGFAPHGMKGIVNSLLVVIYSYGGSELIAITVSEADDPKKAIPKAIR GVMGRIISFYIIPLFLLLIIFPWNTLASTTVSPFVMVFEKMNIPFAADIVNFVIILALFS SINSGVYASSRLLYFRLKDKKGPMSKLAVLNKHQVPQRSVFFCASVLYLGVILSYFVGDE LFGYLAGSLSYTVLLIWILISAAAFVLSLKRGSLFEKSINLLALIILGLIFIGILFTNSL GVTLLTGLLYFVIFFSYRKKNDSFLLSDES >gi|307679217|gb|GL457030.1| GENE 36 31067 - 31252 246 61 aa, chain - ## HITS:1 COG:no KEGG:EF1104 NR:ns ## KEGG: EF1104 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 61 1 61 61 73 100.0 2e-12 MSAKRFIQLFICYAISMIVAILLTDLFNFSSPIAYLVVASIIGYVVITVPLTIMTLLKNK N >gi|307679217|gb|GL457030.1| GENE 37 31433 - 31738 227 101 aa, chain - ## HITS:1 COG:no KEGG:EF1105 NR:ns ## KEGG: EF1105 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 101 1 101 101 122 100.0 6e-27 MFISFNMFILLIVATILMIFLIIYLTVTGNDKNNKKKQKKETKRTTPTLNKKTTVPPSQK PNVVTDVAKKSEPEKQAVQRTQQSTTREDETSQFTRSQRHK >gi|307679217|gb|GL457030.1| GENE 38 31862 - 31936 57 24 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MCENAQNFWNRLLLKPDTGKIIIV >gi|307679217|gb|GL457030.1| GENE 39 32090 - 32851 918 253 aa, chain + ## HITS:1 COG:L174321 KEGG:ns NR:ns ## COG: L174321 COG0247 # Protein_GI_number: 15673715 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Lactococcus lactis # 1 245 1 246 256 364 72.0 1e-101 MKVSIFSTCVVDLLFPNVGQAMVEVLERYGCETVLPTSQTCCGQPTYNSGYVTESTTTLK NQIDSFDGADYVVGPAGSCVGMMKEYHKFLADDPIYGPKAQRLAERTYEFSQFLYRVLGV KDVGATLHGKATYHRSCHMTRILNERESPFVLLDHVKGLEMIPLGHLENCCGFGGTFSVK MPAISEQMVTEKMNDVIDTGAEILISADMGCLMNIGGKFNRDGKKIKIMHIAEVLNHEVD EARMDQPQIISVG >gi|307679217|gb|GL457030.1| GENE 40 32864 - 34336 1406 490 aa, chain + ## HITS:1 COG:L175101 KEGG:ns NR:ns ## COG: L175101 COG1139 # Protein_GI_number: 15673716 # Func_class: C Energy production and conversion # Function: Uncharacterized conserved protein containing a ferredoxin-like domain # Organism: Lactococcus lactis # 1 487 1 490 490 772 72.0 0 MGLSTSNKPLSERIEESKKDVFMQKAVAKAQDAQWEKREGAREALGNWPQWRELGEQIRQ HTIQYLPDYLEEFSDNVAKRGGKVFFAQTAEEANEYVKQVVLEKKAKKIVKSKSMVTTEV DIDPMLLGLDDVSVMETDLAEFILQMDDWDEPSHIVFPSIHKNREQIRQVFAKKLGYQGD NDPVNLARCAREVMRKFFLEAEIGITGCNFAIADSGLINLNTNEGNADLTISIPKTQIVL MGMERIVPTMREAEVLDNLLARSAVGQNLTTYVTFAGQKNADESDGPEEFHVVILDNGRS KALGTAFQPVLQCIRCGSCLNVCPVYRHIGGHGYGSIYPGPIGAVLSPILGGYKQFGELP YASSLCGACTETCPVKIPLHELLIEHRKVMTDDLKMKHGFEDFQMRMVGKATGSPAMFKA AMKVDHAAAGILSKQKDITVENMYNHGGYLDKGPGLVKGWTDVRDLPRPPKSSENFRSWF KKHQEGEKND >gi|307679217|gb|GL457030.1| GENE 41 34329 - 35048 920 239 aa, chain + ## HITS:1 COG:L176579 KEGG:ns NR:ns ## COG: L176579 COG1556 # Protein_GI_number: 15673717 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 6 238 5 226 227 214 49.0 1e-55 MTNEAIQNREPFLQNLREKLGVEKQPVSAHPFEPVNHLPEEQLADKTPAELLTIVKERVE TIHTNLVETTQENLLTTIQQIVAEFGGGNLLLPTDARFEAYGLADLAKSLEAVSVKQWQP GSEQREANIQTAAQANIAIAFAEFLLAESGTIVVESNAGQGRALHFLPKHYISIIPFSKL VPRSTQPAAFYTEKIEKGEKIGSAIHFISGPSNSGDIEMQLVVGLHGPLEVCYVVVMDR >gi|307679217|gb|GL457030.1| GENE 42 35269 - 35817 685 182 aa, chain + ## HITS:1 COG:lin1308 KEGG:ns NR:ns ## COG: lin1308 COG0681 # Protein_GI_number: 16800376 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Listeria innocua # 23 163 26 179 188 146 53.0 2e-35 MSLKSKELIKTVVFFACLALGLFLLRQFVFTPVVVRGHSMDPTLADGERVITLKNTEINR FDIITFPAPDEPDKNYIKRVIGLPGDTIAYKDDTLYINGKEVDEPYLDEFKKALTDGQPL TGDFSLKEKVPADSYFVLGDNRRNSKDGRVIGFIHKKDILGEVKFVMWPFSRFGPIPEVS KQ >gi|307679217|gb|GL457030.1| GENE 43 35928 - 39518 3515 1196 aa, chain + ## HITS:1 COG:lin2369 KEGG:ns NR:ns ## COG: lin2369 COG3857 # Protein_GI_number: 16801432 # Func_class: L Replication, recombination and repair # Function: ATP-dependent nuclease, subunit B # Organism: Listeria innocua # 1 1194 1 1157 1157 568 30.0 1e-161 MSVQFIRGTAVADLEAPLIQATKQWLEEDAQHEVFYLVPNHIKFEQEIQVLQKLRQLQTT TSDSITSTRLQVFSFYRLAWYYLQHTPFYSADVLSDAGAAMIFRKILVEAEEELQIFRGE INKPGFIQQLFQLYQEMREGNIEIAELYPFLEKQTENPKGQDLQLKFQDLTLIFTRFQLQ MSQYGYESAEIIQHLSEYLQTVDLSNVQFVISGYQQFTARELKLIEVLMAQAGSVKVALL LDKQYPHDLPDPRSLFYEAGQTYHQLYQLARQKQIPILSDYVEKKEVLITNPDLQGLNDY WIQSQEHLPPLSTADWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRD LDCYENLLEPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTEL FMPMNQLATSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEA EEQEDVATMEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMW RLQAIEAGQLETARNHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKV PTAIDQVQVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQY LRGTTGRKIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFE KNETTIFDDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPL AKQVFESLTHQNIPEKIGEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDV FGLSPAATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTT SSRMNYIRYQLSQTIKKVSWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQG KIHVRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQ LVGQEAKPAGSLYLHVHNPTLSYEGKDDIEQQMLKKYQFDGLLMKDPDLLDHLDTSLQAK QSSLLFPIEESAKEQIKPGRRQEDKFVTEPELGALLSHNRNKFIEAGNQIIGGEVQLNPA YQGKERIACRYCPFRSVCDFDVMLKENNYHRIENLSKEEIMARLLNKDEEGATEDE >gi|307679217|gb|GL457030.1| GENE 44 39511 - 43305 3752 1264 aa, chain + ## HITS:1 COG:BS_addA KEGG:ns NR:ns ## COG: BS_addA COG1074 # Protein_GI_number: 16078127 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Bacillus subtilis # 8 1254 5 1232 1232 770 39.0 0 MSKTIPLRPANEQFTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRL LIVTYTEAAAREMKERIQVALQKAMNEEQDPERRRHFSRQIALLPTANISTLHAFCLTVI RRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEAFYQLTANFSNDRSDDG LTNLIFSFYEFAKANPDPEAWINGLTQAYEVGDQLGESTLFQTYLKPLAVETLQRTLQRY EEMVTLTEGEEKLQKIWYLAQNEKEQTKQFLQFLERNDLESAYNLTELLSFDRYPTVRAE ELKPTAEQAKQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAY GAEKRLKNLVDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQE SILYWLRRPLSTEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQYGQGKEGKRIILAENFR SRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKATESV EFPELQSPELLIEDKTEGELYVTALKIRELIDQNFLIYDKKLKTDRPITYQDIVLLTPTK KNNLTILDVFKSLEIPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPLAAVLRSPIVG LKENELVLIRLANKETSYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESLEKWREQARRNQ ISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGLFQFVRFIEKMQ EKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLNERYIFEENLGV GIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLFLVGSYKDQAAM WKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVVVSNVPQVKKHP ANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLSFNYPFEVATRT TSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSKPKFLDTVQAPS AAEIGTATHYLLQLIDLSTQPSYEEVRAVQERLVENKLILPAIAEKMNLEQIVAFFDTAL GKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIELDNQCILYDYK TDHVKGTSPQAISEIVERYRGQMNLYRRALQESTHKEVSHVYLILLNGGVIIDMQTGNVV DFIK >gi|307679217|gb|GL457030.1| GENE 45 43375 - 43719 396 114 aa, chain + ## HITS:1 COG:lin1183 KEGG:ns NR:ns ## COG: lin1183 COG1733 # Protein_GI_number: 16800252 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 6 109 2 104 107 101 52.0 4e-22 MEKVKTESFVLCPKFEKSFSILGKKWNGLIIDVLLERGPQRFGELKEKIPMLSDRVLVER LKELEAEGIITKAVRCGEGNRLEYFLTEKGEDLQLAMEQIQHWAEKWVKDEECS >gi|307679217|gb|GL457030.1| GENE 46 44038 - 45084 1364 348 aa, chain + ## HITS:1 COG:L0354 KEGG:ns NR:ns ## COG: L0354 COG0016 # Protein_GI_number: 15673911 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase alpha subunit # Organism: Lactococcus lactis # 1 344 1 344 346 539 72.0 1e-153 MTLQAQLEALRDNTLKEIAQVATLKELNQIRVETLGKKGPITEVLRGMKNLSPEERPVVG GFANEIRDLLTEAIEARKVVLENEALNAALKEESLDVTLPGKQMPQGTRHILTQVMEEIE DIFLGMGYQVVEGYEVESDHYNFERMNLPKDHPARDMQDTFYISDEMLIRTHTSPVQART MEKHDFSKGALRMISPGKVFRRDTDDATHSHQFHQIEGLVVDKNVTMGDLKGTLEVMMKK MFGEDRKIRLRPSYFPFTEPSVEVDVSCFKCGGAGCNVCKHTGWIEILGAGMVHPDVLQM SGIDPTEYSGFAFGLGPDRVAMLRYGVNDIRNFYQNDLRFLNQFKVKE >gi|307679217|gb|GL457030.1| GENE 47 45092 - 47515 3090 807 aa, chain + ## HITS:1 COG:SP0581_2 KEGG:ns NR:ns ## COG: SP0581_2 COG0072 # Protein_GI_number: 15900491 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase beta subunit # Organism: Streptococcus pneumoniae TIGR4 # 149 807 1 655 655 679 55.0 0 MLVSYKWLNEYVNLSNVTPQELADKMSVTGIEVEGVAVPEEGLKKIVVGEVKECVPHPNS DHLSICQVDIGEEELSQIVCGAPNVKAGIKVIVALPGSRIAGNQKIKKGKMRGEVSNGMI CSLEELGYSDNVVPKAYAEGIYYLPQEAVNGTPVFPYLDMDDAIIELSITPNRADALSMR GVAYEVGAIYRQTPQFNDPELKEDASDNVENYVTVTVEDSQDAPAYQIRVIKDVTIAESP QWLQNRLMNEGIRPINNVVDVTNYILLLFGQPLHAFDYQKLDSKEILVRRATAAEELITL DGETRQLTEENIVITNGKTPVGLAGVMGGANSEISQETTTVALEAALFNPLSIRKTSKQF NLRSESSSRFEKGINQATVGLACDVAAAMIAELADGTVVSGTAVGSEVAVKEAQVAVTLE RINQYLGTALDEATVNEIFEALGFAYEVNQGAYEITIPPRRWDIAIEADIIEEVARIYGY DHLPSTLPSGETVAGSLTKAQHVTRQLKSLLEGHGTSEAISYALTTEEKSRQFMMKESQT TRLQWPMSEERSVLRMNLISGLLDDVAYNVARKNNNIAFYEVGRVFYQTEDPTKNLPTEE NHLALALTGNTMVKDWQTKATAVDFYTVKGLVESIVAVLGLTEKISYQATTAIPEMHPGR TAWIYLEDEVVGFVGQVHPTTAKAYDIPETYVAELNLQQLVATEAGGVTYEAVSKFPAVS RDIALLVDETVTNQELVKTISDNAGKYLKEIHLFDVYQGEKLGAGKKSMAYSLTFVNAEA TLVDEEINRSMEKVEKALIEKHQVEVR >gi|307679217|gb|GL457030.1| GENE 48 47713 - 48378 724 221 aa, chain - ## HITS:1 COG:SP0607 KEGG:ns NR:ns ## COG: SP0607 COG0765 # Protein_GI_number: 15900515 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 5 220 2 217 219 247 63.0 1e-65 MPFSEEMRQLLTANNFQFLFNGLKLTLYISFVSIILSTIFGTILAVLRNQTHGPLKLLAS IYVEVVRNIPNLLWIYVIFLIFKIKSIPAGIVSFTVFTTAALAEIIRGGLNGVDKGQIEA ARSQGFSNWQILYHIVLPQAIRNVLPAIVSQFVTVIKDTSFLYSVIALQELFGKSYILMG RYAQTGQVFTIYGIVALIYFIINFSISQFSRWLSRNWAKSY >gi|307679217|gb|GL457030.1| GENE 49 48390 - 49103 634 237 aa, chain - ## HITS:1 COG:SP0608 KEGG:ns NR:ns ## COG: SP0608 COG0765 # Protein_GI_number: 15900516 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 17 236 4 224 225 254 60.0 1e-67 MFLLANISWLEEGPFALYRWEALFQDWRIFGQAFLYTILLSLGAILVAFALGIFFGSLSA TKSKLLHAISRVYVEFFQNTPLLIQFIVVYYGFPLLSPLLSFSITTIAILCVGLYHGAYI SEVVRSGIGAVPRGQFEAAYSQGLTYGQTMRYVILPQAWRIMLPPLTNQVVNLIKNTSTV AIISGADVMFAANSWSSVNLNYIPAFALAGFLYFILCFPLANLARKMEEKNKKAYSR >gi|307679217|gb|GL457030.1| GENE 50 49149 - 49976 1099 275 aa, chain - ## HITS:1 COG:SP0609 KEGG:ns NR:ns ## COG: SP0609 COG0834 # Protein_GI_number: 15900517 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Streptococcus pneumoniae TIGR4 # 42 274 18 247 254 240 54.0 2e-63 MKKQNKWLAGLSLLVLAGIIVGCGSGNNDSTSKSASSNKTVTVEQLKKAGKIKVGVKEDI PNFGYMNPDTNKNEGMEPDIARLIAKEITGSEENVEFVGVTAKTRGPLLDNGELDMVIAT FTITDERKKTYNFTTPYYTDEIGFLVRKEDNFSSMKDLDGKTIGVAQSATTKENLEKKAQ EEGIKFTYQELGSYPELKTALTSKRIDAFSVDKSILSGYVDGKTEILKDGFSPQEYGITT KKANTELNDYLNGLIEKWEKDGTLEKIYQDWGLKS >gi|307679217|gb|GL457030.1| GENE 51 50011 - 50742 632 243 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 239 1 242 245 248 51 1e-64 MISLEHVNKYFGEHHVLKDITLNVEQGEKIVIIGPSGSGKSTLIRCMNQLEKVNDGSVVI DNIDITKPKAPIQKVRQKVAMVFQNFNLYAHKTIIDNLTLAPIKVMGVSKEEAVRTGMEY LERVGLADKASAYPSQLSGGQQQRVAIARALNMHPEIILFDEPTSALDPEMIQEVLDVMV DLSKQNITMVCVTHEMGFARQVADRVIFMDQGQIIEQGTPEHFFTSTENPRAKEFLSKII HNG >gi|307679217|gb|GL457030.1| GENE 52 51007 - 51834 825 275 aa, chain + ## HITS:1 COG:lin1200 KEGG:ns NR:ns ## COG: lin1200 COG0796 # Protein_GI_number: 16800269 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glutamate racemase # Organism: Listeria innocua # 6 270 2 265 266 325 58.0 7e-89 MRMSNQEAIGLIDSGVGGLTVLKEALKQLPNERLIYLGDTARCPYGPRPAEQVVQFTWEM ADFLLKKRIKMLVIACNTATAVALEEIKAALPIPVVGVILPGARAAVKVTKNNKIGVIGT LGTIKSASYEIAIKSKAPAIEVTSLACPKFVPIVESNQYRSSVAKKIVAETLQALQLKGL DTLILGCTHYPLLRPVIQNVMGSHVTLIDSGAETVGEVSMLLDYFDIAHTPEAPKQTHEF YTTGSAKMFEEIASSWLGIENLKAQQIHLGGNEND >gi|307679217|gb|GL457030.1| GENE 53 51827 - 53182 478 451 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|165937309|ref|ZP_02225873.1| non-canonical purine NTP pyrophosphatase RdgB [Yersinia pestis biovar Orientalis str. IP275] # 231 438 5 213 223 188 49 8e-47 MIRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWV AAEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVI QADGGTRTASITGAFVALRLAVNHLLMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDYA EDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELITYQKEALYA LASEEVPSQDSEEKVIVIATRNPGKAKEFSSIFGEKGYTVKTLLDYPNLPDVEETGRTFE ENARLKAETIAEILQKPVLADDSGLIVDALGGMPGIYSARFAGEPTNDASNNAKLLHELT GVPKEKRQARFHCTLVFAEPKKESLVVEAEWPGEVGTIPRGEGGFGYDSLFYVPELGKTA AELSGEEKNKVSHRGQAVAKLKEQWEEWLKK >gi|307679217|gb|GL457030.1| GENE 54 53195 - 53707 561 170 aa, chain + ## HITS:1 COG:lin1203 KEGG:ns NR:ns ## COG: lin1203 COG0622 # Protein_GI_number: 16800272 # Func_class: R General function prediction only # Function: Predicted phosphoesterase # Organism: Listeria innocua # 1 168 1 168 174 159 47.0 3e-39 MKILVVSDNHGDRDCLVDLVNHYEGQVDALFHCGDSELEPTDELWQKLIVVQGNCDFYDE FPKTVTKKVGDQVIYMTHGHLANVRMGLTTLALQAEEAGATIALFGHTHVLGAERHNNIL FVNPGSIRLPRGPVQEKTYAIIESTPEQYLVQYYNKEHQPLERLKATFTK >gi|307679217|gb|GL457030.1| GENE 55 53801 - 54565 549 254 aa, chain - ## HITS:1 COG:BS_glcR KEGG:ns NR:ns ## COG: BS_glcR COG1349 # Protein_GI_number: 16080683 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Bacillus subtilis # 9 251 4 249 258 103 32.0 2e-22 MKSSLETIEKRQQNILALLQKNKQMTTYKLADALNVSLSTIRRDLNVLETKNDIIRKYGY CIYNDQNQKDFDQSGLELLKQAIARVACSYLSDYDTVFINSSSTALNILHYLKADHLTIV TNNLKIATKPHVSQYNYILTGGELRFPKEVLVGDIAINTITATHADVCVIGCSGVSLEHG VTTKIFNEAKINELMIKQTTKVKILVADHRKIGLTSKFKIADITAFDCLITDKHCSSTLI TELRKTGLKVIQVD >gi|307679217|gb|GL457030.1| GENE 56 54759 - 55826 1062 355 aa, chain + ## HITS:1 COG:ECs5168 KEGG:ns NR:ns ## COG: ECs5168 COG2220 # Protein_GI_number: 15834422 # Func_class: R General function prediction only # Function: Predicted Zn-dependent hydrolases of the beta-lactamase fold # Organism: Escherichia coli O157:H7 # 1 355 3 356 356 483 62.0 1e-136 MSKSIHEITKESWLKATFPEWGTYLNEEINQTTVLQGTVALWWLGCTGIWLKTHENTNIL CDLWCGTGKQTHGNGLMKNGHQMMRMSGCQKMQPNLRTQPFVIDPFEIKEVDALVVTHIH SDHLDIHTAAAVHQNCPKALFIGPKEVVKTWQRWGVPAEKTRVIEPGQEIKVNDVNVVAL EAFDRTALITSDDPENTFKGKMPQDMNELAVNYLFETSGGTVYHAGDSHYSNLFAKHGNQ YAIDVCLGAYGENPRGITDKITSVDMLRMAESLNAKVVIPVHYDIWSNFMADPKEIMEIW KFKKDRLHYQFKPYIWQVGGKFVYPDDKDNLEFNFDRGFDDVFVKENDTPFPSFL >gi|307679217|gb|GL457030.1| GENE 57 55844 - 56302 484 152 aa, chain + ## HITS:1 COG:lin2929 KEGG:ns NR:ns ## COG: lin2929 COG1762 # Protein_GI_number: 16801988 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Listeria innocua # 21 149 20 146 148 82 37.0 3e-16 MLTYFWEQELIHYPDKEPVSWQEAIQESCLILLQKHIIDQSYVDEIIQCVETFGPYIIIA PEVAMPHSSEESAGVFGTAISFTKFKQSVTFTGDQEAKTATLFFTLAAQNPAEHLENIQQ LMDLLMTDGVIADLLETNTPMDFKEVMEKYQL >gi|307679217|gb|GL457030.1| GENE 58 56315 - 57802 1499 495 aa, chain + ## HITS:1 COG:SP2038 KEGG:ns NR:ns ## COG: SP2038 COG3037 # Protein_GI_number: 15901859 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 11 473 10 469 485 394 47.0 1e-109 MGEFLLNSWTYFATNVLTQPAYLIGFIVLLGYLLLRRPFYECLAGFLKATVGYFILSVGS GGLVNNFRPILVGLKERFNLQAMVTDPYFGQNAVDAGLMKTFGRTFGDVMILLLIAFIMN ILLVRFQKYTKLRAVFTTGNVQIQQAATAFWILLFCFPNLGRIEVLIFMGLILGCYWAVA SNLTVGITQELTEGAGFAVAHQQMFGIFIFAKLAEWLKKRDQKKHRSEKVDKKLEDIELP GFLSIFNENMVATSILMLFFFGIILLVLGQDYLIQAKFMQEGQSFFFYIMTTSLNFAVYL AILQLGVRTFVDELTQSFQGISNTILPGAVPGIDVAATFGFGSPNAVTIGFLFGALGQFL MIGLLILLKSPTIVIAGFIPLFFDNAVIAVYANNRGGVKAACLFPFLSGLIQVGGSALFA TWIGLSQYGGYLGMFDWATAWPLFTIIMKVLGYVGVAVVVIGLLIIPQLQYRKNPEGYFM IVNDYEQYAKKFQEN >gi|307679217|gb|GL457030.1| GENE 59 57817 - 58116 395 99 aa, chain + ## HITS:1 COG:no KEGG:EF1128 NR:ns ## KEGG: EF1128 # Name: sgaB # Def: phosphotransferase enzyme II, B compnent SgaB # Organism: E.faecalis # Pathway: Ascorbate and aldarate metabolism [PATH:efa00053]; Phosphotransferase system (PTS) [PATH:efa02060] # 1 99 1 99 99 175 100.0 6e-43 MRILVSCANGSGTSLMMMRSVEKAMKELGVPITKIHHCAISEGKSSASQYDVVFTPVNFL QMFQQAEKRGVTVIGIKNVMSAKEIQEKYMASDRYQKSE >gi|307679217|gb|GL457030.1| GENE 60 58130 - 58768 842 212 aa, chain + ## HITS:1 COG:SP2035 KEGG:ns NR:ns ## COG: SP2035 COG0269 # Protein_GI_number: 15901856 # Func_class: G Carbohydrate transport and metabolism # Function: 3-hexulose-6-phosphate synthase and related proteins # Organism: Streptococcus pneumoniae TIGR4 # 4 211 6 220 221 254 59.0 1e-67 MKRPNLQIALDHNSLEDALADCMKVGEIVDIIEVGTILCLQEGQKAIRCLKRMFPNKTIV ADTNCADAGGTVARNVAQAGADFMTVICCATLPTMAAAQKEVRELQVELYGNWTMQQARQ WRELGINQVIYHQSRDALLAGGSWGEKDLNKVQELIDLGFEVSVTGGLTVETLELFQTMA VATFIAGRGITESKNPEQAAKDFQKKIDQIWK >gi|307679217|gb|GL457030.1| GENE 61 58773 - 59633 602 286 aa, chain + ## HITS:1 COG:sgbU KEGG:ns NR:ns ## COG: sgbU COG3623 # Protein_GI_number: 16131453 # Func_class: G Carbohydrate transport and metabolism # Function: Putative L-xylulose-5-phosphate 3-epimerase # Organism: Escherichia coli K12 # 3 283 16 295 297 300 53.0 2e-81 MARIGLYEKALPQNLTWAERLTWAKKLGFDFLEMSIDESDERLARLAWTPSQLQELYQLM VKEDFFIHSLCLSGHRRFPLGSLNKETREKGRKILSQAIRLAHQLNIRVIQIAGYDVFYE EKTAETREFFLQGLKKGVEEAAQYGVILAVEIMDDPFMNSIQKFLEIKEQIPSPFLHVYP DLGNLSAWPENNPAVELEKGIAEIAAIHLKDTFAVTDTFEGKFREVTFGEGCVDFTGLLK TLKRLNYSGPFLIEMWNETDLNFQEKIQAAQQYLYPKLAEVGYYEQ >gi|307679217|gb|GL457030.1| GENE 62 59623 - 60333 679 236 aa, chain + ## HITS:1 COG:SPy0179 KEGG:ns NR:ns ## COG: SPy0179 COG0235 # Protein_GI_number: 15674384 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Streptococcus pyogenes M1 GAS # 7 236 5 233 234 296 60.0 2e-80 MNNKAIIQAMKQRVYEANLALPKLGLVKLTWGNVSEINRTLGIIVIKPSGVKYQEMTKEQ MVVTDLNGQLLETNALKPSSDLPTHLYLYQKMPEIGAIAHTHSLNSVTWAQAGRALPPYG TTHADAFYGAVPCTRALSESEIKEDYEEETGKVIVETFHEQELDPLAIPGVLVYGHGPFT WGMTPEKAVENSLILDEICSMARLTEIINPAVEPIDHFLLDKHYLRKHGISAYYGQ >gi|307679217|gb|GL457030.1| GENE 63 60590 - 61078 690 162 aa, chain + ## HITS:1 COG:L110441 KEGG:ns NR:ns ## COG: L110441 COG0517 # Protein_GI_number: 15673261 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Lactococcus lactis # 1 149 1 147 153 108 38.0 5e-24 MIGTAVKELLLEKQETFLVPAENVANVMCLNPLSHAALVLSQVRYSKIPVLDKGDRFVGL IGLTDVVDKMFDLTSVDFEKLNEFTVADVMEVNVPVIGESWDLEEVLHLLVDASFLPVVD DNQRFKGIITRKEILKAVNHMAHELEKHHLVLPKSEEEMKVI >gi|307679217|gb|GL457030.1| GENE 64 61159 - 61860 969 233 aa, chain + ## HITS:1 COG:BS_ykuQ KEGG:ns NR:ns ## COG: BS_ykuQ COG2171 # Protein_GI_number: 16078482 # Func_class: E Amino acid transport and metabolism # Function: Tetrahydrodipicolinate N-succinyltransferase # Organism: Bacillus subtilis # 1 233 4 236 236 287 69.0 1e-77 MDAYEIIQYIGDAKKQTPVKVTLKGQLKEVTFPETIKVFNNCKTGTLFGDWADVKPFLEA NKEKIEDYVVENDARNSAIPFLDLKDINARIEPGALIREKVEIGDQAVIMMGAILNIGAV VGAGTMIDMGAVLGGRATVGKHCHIGAGTVLAGVIEPPSAAPVVIENEVVIGANAVVLEG VRVGEGAVVAAGAVVVEDVPAHTVVAGVPAKVIKQIDDKTKSKTEILEELRKL >gi|307679217|gb|GL457030.1| GENE 65 61939 - 63066 1313 375 aa, chain + ## HITS:1 COG:SP2096 KEGG:ns NR:ns ## COG: SP2096 COG1473 # Protein_GI_number: 15901911 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Streptococcus pneumoniae TIGR4 # 5 371 3 371 376 454 58.0 1e-127 MEQEELIAIRRQLHQIPEIGLEEKETQAFLLNEIDKMKQPYLQVRTWQTGILVFIEGKNP QKTIGWRADIDGLPIQEEVVSAFQSKRPGFMHACGHDFHMTIGLGVLKELSQQQPDNNFL FLFQPAEENEAGGMLMYEDHAFGEWLPDEFYALHVNPDLPVGTISTRVGTLFAATCEVNI TLKGKGGHAAFPHQANDMVLAATNLIQQAQTIVSRNVDPVVGAVVTFGTFHAGTACNVIA EEATLSGTIRTLTAETNEQTQRRIREISEGIAQSFQCEVTVHLDQKGYLPVVNEPACTTN FIEYISKQATVQFQQAPVAMTGEDFGYLLSKVPGTMFWLGVASPYSLHSAKFEPNEEALL FGVEAVSGFLKSLDN >gi|307679217|gb|GL457030.1| GENE 66 63111 - 64031 1013 306 aa, chain - ## HITS:1 COG:SPy1897 KEGG:ns NR:ns ## COG: SPy1897 COG0668 # Protein_GI_number: 15675710 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Streptococcus pyogenes M1 GAS # 45 299 19 270 281 198 42.0 9e-51 MLILGLASTETVDSSAPDLAEATVKKVSALQRFWNNINWDAIVATLIEKSLSILFLIFLF FIIQRIGKYLIDRTYANYSKKQHFSESRLKTLHTLIINAFQYTLFFFFIYSLLTIVGVPV GSLLAGAGIAGVAIGLGAQGFMNDLITGFFIILEQQMDVGDYIRLLALNIEGTVTSVGLR TTQIKAVDGTVHFIPNRNITTISNLSRANMQVLIDVRINPEEGYEKICEVITEVNETLKE KYIESIQTGPDIFGMVDLGNGNFAVRTTMYVLNGKQFAVKEEFLAQYIKALTEAGFTIPN TPIIAK >gi|307679217|gb|GL457030.1| GENE 67 64201 - 64563 195 120 aa, chain + ## HITS:1 COG:no KEGG:EF1137 NR:ns ## KEGG: EF1137 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 30 120 1 91 91 160 98.0 1e-38 MKVSIEWAKNDLLSKLPVTIFIDERCATRLTADKRRTFIFHNPVALRLGSRFFSSQIIEI AESCTLKVSFNWSCVYLFCIWLLAVKLWIGSVSGRTIVVVALIGVLTYWRRYLLKIKKMT >gi|307679217|gb|GL457030.1| GENE 68 64640 - 65464 1117 274 aa, chain + ## HITS:1 COG:lin0819 KEGG:ns NR:ns ## COG: lin0819 COG0656 # Protein_GI_number: 16799893 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Listeria innocua # 1 274 1 274 274 372 63.0 1e-103 MTLDKTKKLANGNEMPRLGLGVWRVEDGSEATNSVKWALEAGYRLIDTAAVYKNEAGVGE GIRQSGIPREEIFVTTKLWNEDQGYENAIKAFDKSLEKLGLDYVDLYLIHWPVAGKYKES WKALEEIYASGRAKAIGVSNFHQHHLEDLLTEANVVPMVDQIELHPTLTQEPLRKYLAEN KIAVEAWSPLGQGNLLSEPVLVKIGEKYGKSAAQVIIRWHLQNDIIVIPKSVHEKRIQEN FAVFDFELTPEEITAINQLNKDHRFGADPDNFDF >gi|307679217|gb|GL457030.1| GENE 69 65515 - 65889 335 124 aa, chain - ## HITS:1 COG:FN0505 KEGG:ns NR:ns ## COG: FN0505 COG2071 # Protein_GI_number: 19703840 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferases # Organism: Fusobacterium nucleatum # 2 123 120 239 243 109 44.0 1e-24 MQLVNVALGGTLYQDLSMYPQWSVKHGQQPTQPIFATHRIDVEPDSQLSNIYGTTGQVNS YHHQALHTLGKDLRVTAWSSDGLAEAVESTNEQQPLLAVQWHPELMYARDAKSQALFNYF VQKL >gi|307679217|gb|GL457030.1| GENE 70 66028 - 66198 203 56 aa, chain - ## HITS:1 COG:no KEGG:EF1139 NR:ns ## KEGG: EF1139 # Name: not_defined # Def: glutamine amidotransferase, class I # Organism: E.faecalis # Pathway: not_defined # 1 56 14 69 240 105 98.0 4e-22 MQAAEVFHGNQVTYTPQGFVSAVQAAGGVPLVLPIGPKELAATYIQQIDKLLLAGG >gi|307679217|gb|GL457030.1| GENE 71 66379 - 66759 460 126 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148984704|ref|ZP_01817972.1| 50S ribosomal protein L20 [Streptococcus pneumoniae SP3-BS71] # 1 126 1 126 126 181 65 1e-44 LTMKMAHTCVRVKDLEASLDFYQKAFNFEESRRRDFPENKFTLVYLTLPGDDYELELTYN YDHEAYDLGNGYGHIAISTDDLEGLHEKHQVAGLTVTDLKGLPGTAPSYYFVVDPDGYKI EVIRER >gi|307679217|gb|GL457030.1| GENE 72 66902 - 67348 351 148 aa, chain + ## HITS:1 COG:L99869 KEGG:ns NR:ns ## COG: L99869 COG0494 # Protein_GI_number: 15674214 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Lactococcus lactis # 4 144 5 144 146 160 56.0 7e-40 MKTPTFGKREETLTYQTRYAAYIIVSKPENNTMVLVQAPNGAYFLPGGEIEGTETKEEAI HREVLEELGISVEIGCYLGEADEYFYSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLH WVAPEEAVRLLKRGSHRWAVEKWLAAAS >gi|307679217|gb|GL457030.1| GENE 73 67412 - 68224 1038 270 aa, chain - ## HITS:1 COG:SP1291 KEGG:ns NR:ns ## COG: SP1291 COG0561 # Protein_GI_number: 15901151 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Streptococcus pneumoniae TIGR4 # 1 269 1 268 268 276 53.0 4e-74 MSIKLVAIDIDGTLLNSQHKITPRVKEALQKANEQGVRIVLCTGRPLPGVKEQLDELALY GENDFVITYNGSLVQATKDNTIISRYTLSYEDFLEIEMYSRKVGAHLHTIDDSAIYTANR NIGKYTIHEASLVNMPLKYRTVDEMTPEMNIIKMMMIDEPEVLDPAIAKLPLHFTEKYTT VKSTPFYYEIMNKNASKGNALAKLADHLGLNKNEVMAIGDNENDLSMIDYAGIGVAMGNA TENVKTIADVHTTSNDEDGVAQIIEKMVLI >gi|307679217|gb|GL457030.1| GENE 74 68243 - 69613 1565 456 aa, chain - ## HITS:1 COG:SP1290 KEGG:ns NR:ns ## COG: SP1290 COG1078 # Protein_GI_number: 15901150 # Func_class: R General function prediction only # Function: HD superfamily phosphohydrolases # Organism: Streptococcus pneumoniae TIGR4 # 13 449 3 426 434 538 62.0 1e-152 MTIPYKEQRLPIEKVFRDPVHNYIHVQHQVILDLINSAEVQRLRRIKQLGTSSFTFHGAE HSRFSHSLGVYEITRRICEIFQRNYSVERLGENGWNDDERLITLCAALLHDVGHGPYSHT FEHIFDTNHEAITVQIITSPETEVYQILNRVSADFPEKVASVITKQYPNPQVVQMISSQI DADRMDYLLRDAYFTGTEYGTFDLTRILRVIRPYKGGIAFAMNGMHAVEDYIVSRYQMYV QVYFHPVSRGMEVILDHLLHRAKELFENPEFDYDLQASLLVPFFKGDFTLQEYLKLDDGV LSTYFTQWMDVPDSILGDLAKRFLMRKPLKSATFTNEKESAATIAYLRELIEKVGFNPKY YTAINSSYDLPYDFYRPNKDRHRTQIELMQKDGSLVELATVSPLVAALAGQSQGDERFYF PKEMLDQGNKKHYDLFDETYREFSSYIHNGALVLKK >gi|307679217|gb|GL457030.1| GENE 75 69610 - 70461 794 283 aa, chain - ## HITS:1 COG:SPy1220 KEGG:ns NR:ns ## COG: SPy1220 COG0095 # Protein_GI_number: 15675184 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Streptococcus pyogenes M1 GAS # 28 240 33 248 283 194 46.0 2e-49 MSTTFPLHTESFMLLDSGCLTNSDYFLPFALTDVLTTFSGMQHQPIIHFWQLDQAMILGM KDTRVPHLKEGIASLQENDYSVVVRNAGGLGVIADSGILNVSLILPNNSEHKLSIDAAYE LMWAWLRQSFPEKEIDAFEITTSYCPGTYDLSIGGQKFAGIAQRRVKDGIAVMIYISVNG NQLARGEVVRDFYLAGLQEQFGENGYPPVDPAVMANLETLIETPLTIDAVKTRLIEALPQ QFEKSIDPNLTEPIITSEWFQTNLTVQLEKMAQRNALIKGEIV >gi|307679217|gb|GL457030.1| GENE 76 70757 - 71194 622 145 aa, chain + ## HITS:1 COG:SA0563 KEGG:ns NR:ns ## COG: SA0563 COG4506 # Protein_GI_number: 15926284 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 9 143 9 137 142 58 33.0 4e-09 MDLSTGVPVSIQLKTIVQQGNEQKDFFFDLEGQLVKMGDTLYIRYKEELLEDTEPTPVTI KIEPDGHVQLIRAGELRMRLRFGYQEKLDTSYRTPYGLLQISTFTHNLRVSLKDQPMSGK ILVDYDLYSQTERIGEYHLELEFTA >gi|307679217|gb|GL457030.1| GENE 77 71271 - 71888 937 205 aa, chain + ## HITS:1 COG:SPy1895 KEGG:ns NR:ns ## COG: SPy1895 COG3343 # Protein_GI_number: 15675708 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, delta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 171 1 170 191 116 55.0 3e-26 MEINVFEGLNKKELSMIEVAHAILEQHADVMDFSDLVNQIQNYLGKSDSEIRDQLAQFYT DLNIDGSFISLGDNRWGLRSWYPIDSIDEEVTHGLEEDEEDAPRRRKRKKVNAFITNPND EDVIDYNDDDPEDAELTNDDEEDILYDDEEDEDEEIKAYNSDLQEIGADSDDDEEDIPQI EEDLTIIDDDDVEDEDDFDDEYSEE >gi|307679217|gb|GL457030.1| GENE 78 72196 - 73806 2165 536 aa, chain + ## HITS:1 COG:SP0494 KEGG:ns NR:ns ## COG: SP0494 COG0504 # Protein_GI_number: 15900408 # Func_class: F Nucleotide transport and metabolism # Function: CTP synthase (UTP-ammonia lyase) # Organism: Streptococcus pneumoniae TIGR4 # 2 532 3 533 535 878 79.0 0 MTKYIFVTGGVVSSIGKGIVAASLGRLLKNRGLKVTIQKFDPYINVDPGTMSPYQHGEVF VTDDGAETDLDLGHYERFIDINLNKYSNVTTGKIYSEVLRKERKGEYLGATVQVIPHITN EIKEKIMRAAKMTDADVIITEVGGTVGDIESLPFLEALRQMKADMGSDNVMYIHTTLIPY LKAAGEMKTKPTQHSVKELRSLGIQPNILVVRTELPVSQNTKNKLAQFCDVNPEAVIESR DVETLYSIPLALQAQNMDQIVCDHLKLDAPAADMTEWRALEEKVLNLKKKTKIALVGKYV ELPDAYISVVEALKHAGFDFDSDIEIDWVDSQELTAENVAERIGSADGILVPGGFGDRGI EGKIEAIRFARENDVPFLGICLGMQMACVEFGRNVVGLEDAGSAETNPDVTINIIDLMAD QENIENLGGTLRLGLYPCKLKKGTKTAAAYGNEDVVQERHRHRYEFNNKYRQLFEENGLV FSGVSPDNRLVEIVEIPEKQFFVACQFHPELISRPNRPQRLIKGFVGAALANKESK >gi|307679217|gb|GL457030.1| GENE 79 73847 - 76183 2392 778 aa, chain - ## HITS:1 COG:SP0369 KEGG:ns NR:ns ## COG: SP0369 COG0744 # Protein_GI_number: 15900292 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Streptococcus pneumoniae TIGR4 # 41 697 17 662 719 625 53.0 1e-179 MPTANSGSRAARHASNTSSKSSYKKKTQPPKKKKRLVLKIFLGLLIAGMVVFLAGVGLFW FYARQAPKLEDDKLNATVSSKLYDINNEIFEDLGAEKRELIQPNDVPQLLKDAIVSVEDR RFYKHIGVDPIRIIGSALSNVKNGGLQGGSTLTQQLIKLSYFSTKESDQTLKRKAQEAWM AVRLEREKSKEEILTYYINKVYMANGFYGMETAAENYYGKHLSELDLPQTALLAGMPQAP NSYDPYTKPDTAKERRDVVLYTMYDNKKISKAEYEKAKATPIDEGLVPLKASDDNRKVVD NYVKEVINEVKAKTGKNVYTDGLDIYTNLDMNAQKQLYDIVNSDQYVAFPDDKMQVASTV IDVASGQVRAQIGGRHIPDDVQLGNNLAVNTQRDVGSTVKPIMDYGPAIENLNYSTGRLM VDKPTKYPGTDIDVFNSDLTYQGVITMRRAIMGSRNTTAVQTFDEVGKENIMPFIKGLGI DYKNLEASNAISSNTSDVDGDKYGISSLKLAAAYAAFANNGIYNKPYYVNKVVFNDGTSV DYQPDGKRAMKDSTAYMMTDMLKDVLNGGTGFNGAIPGLIQAAKTGTSNYTDEDLARMGT TEKGIAPDSTFVGYTTHYAVSVWTGYNDRNTPIYQEYYGIASDVYREIMSYLSQNVSNDD WVQPDSVVRVGNELYVKDAYEVPNVQVLPSTTSSAPQPESSSTVESSSTKEAESSSSSSS ESAPSSSEAPPSTEQPASSSSAEQPATSEQPPEPSSSSSQEPPQPPESSSKPDENKAA >gi|307679217|gb|GL457030.1| GENE 80 76225 - 76842 360 205 aa, chain - ## HITS:1 COG:SPy1648 KEGG:ns NR:ns ## COG: SPy1648 COG3331 # Protein_GI_number: 15675520 # Func_class: R General function prediction only # Function: Penicillin-binding protein-related factor A, putative recombinase # Organism: Streptococcus pyogenes M1 GAS # 9 200 2 191 199 210 55.0 2e-54 MSFHYPNGIPYNHHEAQSPKKQVKKKRPVEFGNRGMDFEEAINQSNQYYLLNKQAVVHKK PTPVQIVKVDYPKRSAAVIKEAYFRQASTTDYNGVYQGRYIDFEAKETKNTTSFPFKNFH QHQIDHMEQCIAQQGICFVLLWFSSLKRCFFFSGENLITHWKNQAVTGKKSMPLALIEKE GIELSFGIAPRIPYLDAVEQYIQTH >gi|307679217|gb|GL457030.1| GENE 81 76905 - 77447 619 180 aa, chain + ## HITS:1 COG:BH1768 KEGG:ns NR:ns ## COG: BH1768 COG4474 # Protein_GI_number: 15614331 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 4 175 1 172 189 153 43.0 2e-37 MEMIKTLYVTGYRSFELGIFQGKDPKITVIKNVLKKELASYIEAGVEWILISGNLGVELW TAEVVGELKTEYPEVQLGLLYPFKDFGNNWNEQNRELLTKAESLADYINSVSHQPYQSPA QLKMHTKFLLEHSGGSLLIYDKEYPGKTEYFLKDAQHFSEREPYDIRLITMDDLQNSVID >gi|307679217|gb|GL457030.1| GENE 82 77541 - 77951 527 136 aa, chain + ## HITS:1 COG:lin2002 KEGG:ns NR:ns ## COG: lin2002 COG3599 # Protein_GI_number: 16801068 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division initiation protein # Organism: Listeria innocua # 9 106 13 111 113 89 54.0 2e-18 MANLVYSPKDILQKEFKTKMMNGYDPIEVDEFLDNVIKDYEAYNKELLSLQEENSRLMAK LDQLSKAQPTPRVAQEVPKSAAVTNFDILKRLSNLEREVFGKKLDETPSTPVTPSAPSMT AEPANHDVDNAQTRQF >gi|307679217|gb|GL457030.1| GENE 83 78665 - 79828 1254 387 aa, chain + ## HITS:1 COG:lin2000 KEGG:ns NR:ns ## COG: lin2000 COG0116 # Protein_GI_number: 16801066 # Func_class: L Replication, recombination and repair # Function: Predicted N6-adenine-specific DNA methylase # Organism: Listeria innocua # 5 387 2 382 382 533 68.0 1e-151 MTKEKTFKLVATAASGLEALVGKELRDLGIPCEVENGRAVFEGTVETIATANLWLRTADR IKIVVGEFNAYSFDELFEKVKALPWEDYLPLDAEFPVAGKSIKSKLYSVPDCQAITKKAI VNRLREVYHRPATVPLTETGALFKLEVALLKDKVTLTLDTTGPSLFKRGYRIEKGGAPLK ENMAAALVMLTNWRKDRPFYDPVCGSGTICIEAALIGHNIAPGFNRSFTCETWDWVDPAI FEKVRNEAEAKADYDVELDICGSDVDGRMIEVARANAEEVGLGDSITFKQLALKDFTTEK EYGVMVANPPYGERLGEEESVRRLYKEMGHVFRPLTTWSKYILTSDLAFEEYYGAKATKK RKLYNGALRTDLFQYWGTRPPRKPRED >gi|307679217|gb|GL457030.1| GENE 84 79847 - 81343 1807 498 aa, chain + ## HITS:1 COG:lin1999 KEGG:ns NR:ns ## COG: lin1999 COG2317 # Protein_GI_number: 16801065 # Func_class: E Amino acid transport and metabolism # Function: Zn-dependent carboxypeptidase # Organism: Listeria innocua # 3 496 6 499 502 499 49.0 1e-141 MKEAVFLQEVKEIQLLKNALTLLDWDSSTGMPEKSSPFRGEVEGYLTGLYFERSIGPVIQ EALAYFETRPEELSELGKLVFEKVKEEYALNKNVPAERMQEYVKVLNQAHTDWLKARAAQ DFGLLEETLTKVVAFQKEFIPYWQKEEKTPYDVLLNQFEPGMTVEKLDQVFDQVKQGIQE IRTVLAEKGTPPRTDFLSRKMTKEQQRRFVIGVVEQLGYDFSKGRLDDTVHPFMTALNRN DARITTRWEENNFSMATFGVIHEAGHGMYEQNFDPKFDFTPLSEGASMGIHESQSLFNEI IIGSNRAFWQKQYPFFQECAEGTFDDIAFEDFYASLKETKASLIRIDSDSLTYPLHIIIR YEIEKMLFNGSLEVADLPKVWNEKYQEYLGVSPENDLEGVLQDVHWSGGSFGYFPSYALG YMYAAQLFHAMKQELSVDEILASEDYSDIRKWLTQHIHQYGASRKPNQLIYDATGEELNP GYLIDYMKAIYFDVYQVQ >gi|307679217|gb|GL457030.1| GENE 85 81376 - 82092 850 238 aa, chain + ## HITS:1 COG:BS_dnaD KEGG:ns NR:ns ## COG: BS_dnaD COG3935 # Protein_GI_number: 16079292 # Func_class: L Replication, recombination and repair # Function: Putative primosome component and related proteins # Organism: Bacillus subtilis # 9 232 11 230 232 124 35.0 2e-28 MLSIREYLEAGETTISNLLFDHYQKIGLKDDEFLFLLQLFRSQNAGDLFPDLMAIAETMG KTPDTIYKLLNQLVSRGFIRIETQQNQKGQMMDTYDLLPVFQKIQLFLQTSKEKQVVANH EDEIKQLYQGFEKEFGRPLSPIELEMIGQWLNTDHYSPELIRLALREAVLNQAYSLKYID RILLAWERKNITTKEQVAADQKKRKDSMIQNEIEQQGQTQESLPKVTLHNWLNPEDSE >gi|307679217|gb|GL457030.1| GENE 86 82107 - 82754 167 215 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|46129221|ref|ZP_00155777.2| COG1194: A/G-specific DNA glycosylase [Haemophilus influenzae R2846] # 26 205 31 213 378 68 26 9e-11 MLSKEKTMEAIEIMYEMFPNAECELKHKNPFELLIAVILSAQATDVSVNKATPGLFAAFP TPEALAAAPVEEIIAKIKTIGLYRNKAKNIKACAQQLLERFNGEVPQTRDELVSLPGVGR KTANVVMGDAFGEPAFAVDTHVERVSKRLRICKLNANVTEVEQTLMRKVPKELWVKTHHT MIFFGRYHCLARAPKCEACPLLYMCQEGKERMKGK >gi|307679217|gb|GL457030.1| GENE 87 82944 - 83708 740 254 aa, chain + ## HITS:1 COG:BH3917 KEGG:ns NR:ns ## COG: BH3917 COG2188 # Protein_GI_number: 15616479 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 7 229 26 251 261 124 32.0 1e-28 MTENAPKFKQISAEIEKKIRDGLYVSAQKLPSEYDLAKEYNCSRLTIRKAIDDLIRKNIL VKRHGKGSYVMSQAKIQSGRAGLQGFTEAAKAYGKKSQTEVISFEEVVHPAEKIREALQV GKNEAIYELIRRRMLDGEPMTVEKIYLPQAYVQGHTKQDFEGSLFCLIEKNVEIAYSHQE IEAILVEAEISELLNVPVGQPLLQVHSITYALDATPILYDVSLYRADRYTFKNTLTRYSP SENNQVELGGSWNE >gi|307679217|gb|GL457030.1| GENE 88 83705 - 85003 1300 432 aa, chain + ## HITS:1 COG:CAC2723 KEGG:ns NR:ns ## COG: CAC2723 COG0624 # Protein_GI_number: 15895980 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Clostridium acetobutylicum # 2 429 3 463 465 258 34.0 2e-68 MKIKEEIAAQKDLFYEDLNKIIAIRSVKGSPKKEAPFGEGPKRALEETLKLAERYGFQTG IVNDAVGYAQWGTAEEYLGIIGHLDVVPEGSGWSVPPFQLTKKNQRLYGRGILDNKGPIL ACLYGMKLLKELGYQPKKTIRLMFGTDEESGSGDIPLYLEKENAPVFGFTPDCKYPVVYG ERGIVNYEITTTIPDDSSEQIGQIIGDQAKDHVPDQLSVVIAGKTTAITGKRAPSNAPEL GKNAITLLAQKISEEQLVKGNLLQYFDWLTASFHEKHYGEGVALDFKDQDSGQLILTPYA LEKRGQQLVLSLAVRYPVSITENEVTTQLTKALFPESEVTVIRRLPSTLFPKDERNVQKL TKVYEQITGLDGTPVTTTGATYARFMPNIVAFGPSFPGQKGIAHNQDEYMDEKDLLLNLE IYMQAMIALTEA >gi|307679217|gb|GL457030.1| GENE 89 85173 - 86126 1074 317 aa, chain + ## HITS:1 COG:CC2359 KEGG:ns NR:ns ## COG: CC2359 COG1446 # Protein_GI_number: 16126598 # Func_class: E Amino acid transport and metabolism # Function: Asparaginase # Organism: Caulobacter vibrioides # 4 281 20 313 327 142 33.0 9e-34 MTWGAIATWRMAHDGLLKATEELQQGGAAGTAVEQLIKEVEDYPFYKSVGYGGLPNEEGI LEMDAAYMDGDTFAIGAVAGITDVKNPISVAKALSKEKFNSFRVGAGATKYSMLHGFERK NMLTERANQWWQKRLKEIQENQLNPYDGHDTVGAITLDQTGSMAAGTSSSGLFMKKAGRV GDSPLSGSGFYVDSEIGGAAATGLGEDLMKGCLSYEIVRLMGEGRSPQQACDQAVYAFHE KLTQRYRKAGAFSLVAMNKQGDWGVATNVEFTFTVGTDMQQPEIYIANPGKNHTTEIQPI SQEWLAAYEKRIKAPIE >gi|307679217|gb|GL457030.1| GENE 90 86146 - 86475 566 109 aa, chain + ## HITS:1 COG:CAC0384 KEGG:ns NR:ns ## COG: CAC0384 COG1440 # Protein_GI_number: 15893675 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIB # Organism: Clostridium acetobutylicum # 5 104 3 100 102 80 46.0 6e-16 MSKKQIYLFCDAGMSTSIMVNKMMEVVEKHQMPLMITAFPIARAQEVVEAEKPVAILLGP QVRFLLEKTKEQFAPQGIPVAAITPEIYGMMDGEKALKEALRLIKQNKK >gi|307679217|gb|GL457030.1| GENE 91 86494 - 87849 1274 451 aa, chain + ## HITS:1 COG:BS_licC KEGG:ns NR:ns ## COG: BS_licC COG1455 # Protein_GI_number: 16080909 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Bacillus subtilis # 1 430 1 433 452 342 40.0 1e-93 MQKFLDWLERVLTPLAKVIGENKYLVAIRDGFLLSTPLLIVGSVFLLIANFPLPQWDTWM SHLLGKDWATMMSVPASASFDVMTILAVVGIAYSLGKQFNVDAMQAGIIALVSFFIVTPY QTLFTPENSSKVYEVTSLPLKWMGSSGLFLGMIVALIATRLFVAIVRKGWTIKMPEGVPP TVVKSFEALIPSFLVVTLMFLVNWLAALTPYGNLQDVIFEFLQTPLLSLGNTLGAMSIAY LFLHFFWFFGINGGSVVGAVFNPVLRALSVENLQAFKDGHEIPNIITGQFQDMFATFGGA GSTLSLIIVMVLFCKSQRIKKLSQLSLIPGVFGINEPIIFGLPIVLNPILLIPFVLVPAI NIIIAYFAMDWGLVPLTNGIQLPWTTPPIISGFLVSGWQGSILQALLLVLGMFIYYPFIR VMDDQYLREEWKAQEEESEEIDFDSFDFDDL >gi|307679217|gb|GL457030.1| GENE 92 87867 - 88385 559 172 aa, chain + ## HITS:1 COG:no KEGG:EF1161 NR:ns ## KEGG: EF1161 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 172 1 172 172 323 99.0 1e-87 MKKILLVLNHSLAGFGSDEQAQLKPSGKKAPLGPGVTLLPFLQKQGAEIVATLYCGDQYY LENEEEVAKKFIGFAKKFHADAVLCGPAMHYPNFGEMAARLACKFNAAGIPAIVAMAEEN PAVSHYYQQVPIVKMPKKGGIGLNNSFKQMAQLVVAKANGKETKQLEETSCF >gi|307679217|gb|GL457030.1| GENE 93 88503 - 90884 1799 793 aa, chain + ## HITS:1 COG:lin0195 KEGG:ns NR:ns ## COG: lin0195 COG1199 # Protein_GI_number: 16799272 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Listeria innocua # 6 785 5 779 779 758 46.0 0 MKSTRKIAVRQVVEFILRRGSIDSRHVSEHTPQEGSRLHRMLQKEAGSLYQKEVSLKIEV PLNGHNYCVEGRADGIFVKETGQVVIDEIKTSEPAFEELPPEKVELFWYQAMCYGHMYCQ QEQLSEITLQLTYYQTTTKQITRQERHFTEAALAEFFTDLMKRYEQWVIFKEEWRILRNK SLKNLSFPYGEYRKGQRELAVAVYKTILSKQRLFVEAPTGTGKTMSTLFPAMKAIGEEEG ERIFYLTAKTITRQVAEDAVKALSEKQAQTKSITLTAKDKICFLTERNCTPEYCPFADGY YDRLNEGLWDLLQHENHLTREVIERYAQKHQLCPFELSLDASLWCDLIIGDYNYLFDPTV YLRRFFEEPQSAEENIFLVDETHNLVNRSREMYSAAISRNAVLQIQKRLQKESVQLKRAC QKVLTTFDDIEAICEEKDTDFFAQRAPIDSLVKQIQRLTEVIAEWLPENQHIEELASILS FYFDCLSYLRISEYYDNGFYTSISLRNYDCVVKQFCVDPAYLLSQRLDKGKASILFSASL TPLNYYQEVLGGGEESLRYRIPYPFPEENQLLMIGSHLQTTYKNREKSYPQISELLGKLS ETKTGNYLIFFPSYAYMDDVYQVFSQRYPQVKTQIQGTDLNEKEREAFLAEFKENPQETF IGFCVLGGIFSEGIDLKGTRLIGTIIVSVGLPQMNPEQELIRTFYQEERGQGFQFAYQIP GMNKVLQAAGRVIRDAQDKGFVLLLDERFELPSVQRFFPPHWLAHRKANTNEQLIQQVKQ FWLKNKENKGGNK >gi|307679217|gb|GL457030.1| GENE 94 90881 - 91846 1123 321 aa, chain + ## HITS:1 COG:L142722 KEGG:ns NR:ns ## COG: L142722 COG0252 # Protein_GI_number: 15672718 # Func_class: E Amino acid transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D # Organism: Lactococcus lactis # 1 320 2 322 323 359 58.0 5e-99 MKTILVLHTGGTISMSKVAGGSVAPNEKNPLMEQEALFSGKVHLVVEDIFNIPSPHMTLE RMFQLKERIQKAYSEPIDGVVITHGTDTLEETAYFLDITLEKKIPIVLTGAMRSSNEIGS DGLYNFISAIWTACSDESYDKGVLVVMNDEIHTARYVTKTHTTNVATFRTPTFGPIGTIA KERAFFAKEVLPQEVCDVSSVKGNVHVVKAYAGMGERMFELLNTPETDGLVIEALGAGNL PPETLPALQKMLDNGIPVVLVSRCSNGIAEDIYDYAGGGVGLKKMGVVFARGLNGPKARI RLIVGLNSEKNPAELKEFLEQ >gi|307679217|gb|GL457030.1| GENE 95 91868 - 92551 647 227 aa, chain + ## HITS:1 COG:no KEGG:EF1164 NR:ns ## KEGG: EF1164 # Name: not_defined # Def: HD domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 227 1 227 227 419 98.0 1e-116 MKLFERIHQDTEIRQIYDAIGQMEDEEAGWAYHNWFHVTNVVAMTEMILKQLAVSEEYLE AAKIAALLHDVGALQGKAGHALRGKQFAEAYFRKQKICLPYQEEILSSIENHSNGFDSEE LMTLALIISDKLDITTSRVAKAGYFVPGMRQLQFLKKIEIMLSEQEVCVSFTAEEELDLE ELNAFYFMPKVFKAIAAFSEKIQRRPIVLLNNQEWPVPKPKNPSTVH >gi|307679217|gb|GL457030.1| GENE 96 92568 - 93062 700 164 aa, chain - ## HITS:1 COG:BS_yitK KEGG:ns NR:ns ## COG: BS_yitK COG1666 # Protein_GI_number: 16078166 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 3 164 2 163 163 172 59.0 3e-43 MAAKEASFDVVSEVNMEEVKNAIQIALKELKNRFDFKGSIADIKLENDKLVVVAEDDYKV EQVKDILFGKLVKRNVPIKNIHFSESEKALGGTARQYGDLISGIDKENAKKINTAIKNSG IKVKSQIQEDKIRVTGKSRDDLQKVMALLRELDLPIALEFNNYR >gi|307679217|gb|GL457030.1| GENE 97 93294 - 94250 893 318 aa, chain + ## HITS:1 COG:lin2365 KEGG:ns NR:ns ## COG: lin2365 COG1284 # Protein_GI_number: 16801428 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 12 293 9 290 300 249 46.0 4e-66 MSRLVSTYQRNESIKKIAVMAITALTSAVGLNFFLIPAKVFSAGMNGIAQIIATLLYTNL GIHINTGIFILFLNIPVFILGFVKLGKQSTILSFINVIGISVVTMFVPIVTVTTNPLMNA IMGGVLVGVGAGLSLKMGFNTGGMDIISLILSKTTGKTVGNFMFLLNGIIVLLAGFVFNW ESALYTIISIYCLSQVVDMIHTSHQKVTAMIVTTRPEAVALEVSQQIARGMTLLPSIGGY SGAEGRMIMMVITRYELYDLEQAVYSIDENAFVNILPTQSVLGRFANEDEQRIFHSTGTF PELQSYKVKRYPPKKKLK >gi|307679217|gb|GL457030.1| GENE 98 94453 - 95322 1373 289 aa, chain + ## HITS:1 COG:SP0605 KEGG:ns NR:ns ## COG: SP0605 COG0191 # Protein_GI_number: 15900513 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Streptococcus pneumoniae TIGR4 # 1 289 1 293 293 388 71.0 1e-108 MPVVSGAEFLKAARKGGYAVGGYNTNNLEWTQAILEAAEAKKAPVLIQTSMGAAKYMGGY KVAKDMITNLVDSMNITVPVAIHLDHGDYEAALECIEVGYTSIMFDGSHLPFEENLKLAK DVVEKAHAKGISVECEVGSIGGEEDGIIGTGELADIEECKQMVATGIDYLACGIGNIHGQ YPENWKGLAFDHLQAIAEAVGSDVPLVLHGGSGIPQEQIEKAISMGISKVNVNTEFQLSF AKATREYIEAGKDLEGKGFDPRKLLAPGKAAIIKDAEEHIDWFGSANKA >gi|307679217|gb|GL457030.1| GENE 99 95496 - 96788 1716 430 aa, chain + ## HITS:1 COG:L113067 KEGG:ns NR:ns ## COG: L113067 COG0766 # Protein_GI_number: 15672294 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Lactococcus lactis # 1 418 1 420 421 543 67.0 1e-154 MKKIVINGNRPLKGEVTISGAKNSVVALIPAAILADSPVTLDGVPDIQDVHSLIEILEIM GAKITFENNTLIIDPTEVVSVPMPKGKINSLRASYYFMGSLLGRFGEGVVGLPGGCYLGP RPIDLHIKGFEALGAHVTNEHGAMYLRTDEAGLQGTRIFMDMVSIGATINVMLAAVKAKG KTIIENAAREPEIIDIATLLNNMGAKVRGAGTDVIRIEGVEELHGCRHSIIPDRIEAGTY LAMAAAMGEGIKVRNVIYEHLESFIAKLQEMGVKMTIEEDMIEVHPSHDLKMTTVKTYPY PGFATDLQQPLTPLILKAQGTGEIIDTIYAQRNKHIPELVRMGADASVEGNMIILNGPNQ LHGAEVVASDLRAGACLVTAGLMAEGTTTIYNVEYILRGYDHIIEKLTALGADIQMLETE EQEGPFEVDQ >gi|307679217|gb|GL457030.1| GENE 100 96803 - 98077 1173 424 aa, chain + ## HITS:1 COG:BH3781 KEGG:ns NR:ns ## COG: BH3781 COG1158 # Protein_GI_number: 15616343 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Bacillus halodurans # 1 419 5 423 423 609 71.0 1e-174 MAELENSTLKDIYAYAKEFKIPYYSQMNKKELSLAVIRAQAEKQGFFFMEGILDIVSQDG YGFLRPINYGPSAEDIYISSSQIRRFGLRNGDKVAGKARPPKESERYYGLMHVESVNGKD PEEAKERPHFPALTPLYPEKQLTLETTAGRLSTRMIDVFAPIGFGQRGLIVAPPKAGKTS VLKEIANGITENHPDVELILLLIDERPEEVTDLERSVKGDVVSSTFDQQPQNHTRVAELV LDRAMRLVEDKRDVVILMDSITRLARAYNLVVPPSGRTLSGGIDPAAFFKPKRFFGAARN IEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLSRELAERRIFPAIDIKKSSTR KEELLMTPEQLEETWKLRNNMSGDSLEYTDQFIKMLKRTQNNQQLFEVFHDVSFGKQIKR NPKR >gi|307679217|gb|GL457030.1| GENE 101 98147 - 98446 532 99 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227518426|ref|ZP_03948475.1| ribosomal protein L31 [Enterococcus faecalis TX0104] # 1 99 1 99 99 209 100 4e-53 MDQGKGAKKRMKQDIHPNYQPVVFMDSTTGFKFLSGSTKGSSETVEWEDGNTYPLLRVEV TSDSHPFYTGRQKFTQADGRVDRFNKKYGLKDENANPDA >gi|307679217|gb|GL457030.1| GENE 102 98716 - 98934 104 72 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIDNFLYKVLLSFRDIVVLIVQLNVHHFLGNSLCTQFLLFYACTVSILILLSTIVLALLY PFTNNSFLIKKI >gi|307679217|gb|GL457030.1| GENE 103 98838 - 99875 653 345 aa, chain + ## HITS:1 COG:lin1075 KEGG:ns NR:ns ## COG: lin1075 COG1887 # Protein_GI_number: 16800144 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Listeria innocua # 60 339 89 381 383 140 33.0 5e-33 MSFPRNDGHLIEQLEQQYHGMIIVLYTKNCQSYAASLNQKGIKTILFDKKTLLITTAISY LKSAPLIFVDNYFPELAILKKKQVVIQLWHANGALKQFGWGAYHTKHRSSKDQIRFQKVY DKMNYFIVNSLKMEAIFRNNYRLENAQFCHFGSPRLAYLEKLEVGETNQNNKVLYAPTYR EGMNEMMLVINQAIKAFSAMPNFHFYMKLHPSIQLDAIELPRNVSIWEKHIFESFSEIGY LITDYSSVVFEYMHVKEQPNILFFCPDLEKYALNPGIEPDFFEYLPGPLVENEKQLIVAL SNFSINSYKDNITRINEEWNQYQSKETINKIVELVERILGGFCEK >gi|307679217|gb|GL457030.1| GENE 104 99865 - 100611 489 248 aa, chain + ## HITS:1 COG:BS_tagA KEGG:ns NR:ns ## COG: BS_tagA COG1922 # Protein_GI_number: 16080628 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Teichoic acid biosynthesis proteins # Organism: Bacillus subtilis # 5 244 1 241 256 157 37.0 2e-38 MKSKVRTEYIGGLPVDVLTHQEIMDDLESYLKAKEKMIVTSVNPQISLLAFEHPEVKLYL KRATHRIADGIGVVKASKLMGGSIRERVTGIDVMDNFLEYANQHKERIFLYGAKQEVVEA AAKNIQRQYPGIVISGILHGYTKKKQQEIVEQINKAEPRFVFVALGSPKQEIFLEQTIDH LTANVFLDVGGTFDVLAGSVKRAPEFYINHNLEWLYRCLTMKRYDRLMQIPKYIYLTIKY RNNKSRGQ >gi|307679217|gb|GL457030.1| GENE 105 100612 - 101205 353 197 aa, chain + ## HITS:1 COG:no KEGG:EF1174 NR:ns ## KEGG: EF1174 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 197 1 197 197 311 100.0 8e-84 MIILFIWENDLDTTFYIVKIEKDEKFILRVPPIHKLSKFVQNNQWNSLIEELRKLSSYEV TEYIIIKKAMLFSYLFEDDKEIVISNQSERHLIDQNGKEWFLPKGKVAVNQEVLSEYLRF SHSDAERSFEHQEHIFRLTKIKLLKDKNPLKLQKQLKQLKKATTTSFSIKSLSKLLLIYT ATENKKFDRKTIKVNQE >gi|307679217|gb|GL457030.1| GENE 106 101271 - 101669 405 132 aa, chain + ## HITS:1 COG:BS_tagD KEGG:ns NR:ns ## COG: BS_tagD COG0615 # Protein_GI_number: 16080627 # Func_class: M Cell wall/membrane/envelope biogenesis; I Lipid transport and metabolism # Function: Cytidylyltransferase # Organism: Bacillus subtilis # 1 128 1 126 129 157 62.0 3e-39 MKKILTYGTFDLLHYGHINLLKKAKQQGDYLIVGLSTDAFNLEKKKQSYFSYEKRKQLLE AIRYVDLVIPETSWKQKVSDIAEFKIDTLVMGDDWQGAFDFLEVETTAKVLYLPRTPEVS TTQIKKELYYSE >gi|307679217|gb|GL457030.1| GENE 107 101808 - 102569 531 253 aa, chain + ## HITS:1 COG:no KEGG:EF1176 NR:ns ## KEGG: EF1176 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 252 1 252 354 422 96.0 1e-117 MSRKKVGVFCLFLFFTFFIIVPKVEATEEMKTKFTVTPVLPENQVSGTSSYYDLILAPKQ SSTIVLDIKNKTDEKLSLVLTLANASTNDNGLIVYNDFDKPLDSSLKVPLTDLVTLENEE VSVPPHQTVSAKMKVKGLDQPIKGVVLGGVYAHLKDEKTEEENQTTGLTSRYGFNVAIAM RSAENAPLTEVNQLKLAKVTPTIALGAKSLKAVIQNPYAAIFPEVRLEGQVIKKESSKKI AQRTLKKCSLCPK >gi|307679217|gb|GL457030.1| GENE 108 102574 - 102873 235 99 aa, chain + ## HITS:1 COG:no KEGG:EF1176 NR:ns ## KEGG: EF1176 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 99 256 354 354 200 98.0 1e-50 MNFHLDLGKQPLDAETYIFTGRAILQQDEQQSWPFQQEFTINTREAKKLNQEATVKWVLP TWWLPTFYTLLVITIGAIYSVIWRNNYQKTSEKESENNG >gi|307679217|gb|GL457030.1| GENE 109 102866 - 103078 229 70 aa, chain + ## HITS:1 COG:no KEGG:EF1177 NR:ns ## KEGG: EF1177 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 70 1 70 70 89 97.0 4e-17 MASWFWLSGGLAVICFMFFLFSLLTSMSFIQHAKEPRSILKETLLSWLMLLLSGGWITIG LLLYFSLKNQ >gi|307679217|gb|GL457030.1| GENE 110 103305 - 104183 1163 292 aa, chain + ## HITS:1 COG:CAC1523 KEGG:ns NR:ns ## COG: CAC1523 COG1940 # Protein_GI_number: 15894801 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Clostridium acetobutylicum # 5 284 2 281 288 342 56.0 5e-94 MTEKLLGSIEAGGTKFVCGVGTDDLTIVERVSFPTTTPEETMKKVIEFFQQYPLKAIGIG SFGPIDIHVDSPTYGYITSTPKLAWRNFDLLGTMKQHFDVPMAWTTDVNAAAYGEYVAGN GQHTSSCVYYTIGTGVGAGAIQNGEFIEGFSHPEMGHALVRRHPEDTYAGNCPYHGDCLE GIAAGPAVEGRSGKKGHLLEEDHKTWELEAYYLAQAAYNTTLLLAPEVIILGGGVMKQRH LMPKVREKFAELVNGYVETPPLEKYLVTPLLEDNPGTIGCFALAKKALIAQK >gi|307679217|gb|GL457030.1| GENE 111 104274 - 104522 479 82 aa, chain + ## HITS:1 COG:no KEGG:EF1180 NR:ns ## KEGG: EF1180 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 82 1 82 82 88 100.0 8e-17 MADLKGRFDDAKDKVEGTAKEAQGKVTDDKGKELEGKAQSTFADVKDKARDAGDDLKEGA EKLTDKVKEGFEDLKDKFSKDK Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:54:53 2011 Seq name: gi|307679216|gb|GL457031.1| Enterococcus faecalis TX2141 genomic scaffold Scfld106, whole genome shotgun sequence Length of sequence - 1062 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 10 - 969 211 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase - Prom 1002 - 1061 4.4 Predicted protein(s) >gi|307679216|gb|GL457031.1| GENE 1 10 - 969 211 319 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 5 307 11 315 317 85 27 1e-17 MTYTHLTSNELAMIEAYYNNHQSVAKTAVLLNRSRQTIHKVYQFFKTGHNALDYFNQYKK NKTRCGRRPIVLSDEQTEYIQKRVVQGWTPDVIVGRAEFSISCSMRTLYRMFKQGVFEVT HLPMKGKRKANGHKETRGKQSFRRSLRDRGNDYSKFNQEFGHLEGDTIVGKKHKSAVITL VERLSKVIITLQPEGRRAIDIENRLNQWMQSVPKHLFKSMTFDCGKEFSNWKSISNINDI DIYFADPGTPSQRGLNENSNGLLRKDGLPKQMDFNEVDESFIQSIASKRNNIPRKSLNYK TPIEVFLSHICKEELSNLI Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:55:12 2011 Seq name: gi|307679215|gb|GL457032.1| Enterococcus faecalis TX2141 genomic scaffold Scfld107, whole genome shotgun sequence Length of sequence - 63686 bp Number of predicted genes - 63, with homology - 61 Number of transcription units - 39, operones - 20 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 527 - 586 3.8 1 1 Op 1 . + CDS 637 - 1476 1110 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase 2 1 Op 2 . + CDS 1499 - 1981 692 ## EF0630 glyoxalase family protein + Term 2016 - 2060 9.1 + Prom 2065 - 2124 5.1 3 2 Tu 1 . + CDS 2147 - 3592 1190 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes + Term 3610 - 3650 7.1 + Prom 4079 - 4138 6.2 4 3 Tu 1 . + CDS 4290 - 5546 601 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 + Term 5649 - 5694 13.2 + Prom 5681 - 5740 9.2 5 4 Op 1 7/0.000 + CDS 5845 - 7707 2273 ## COG0076 Glutamate decarboxylase and related PLP-dependent proteins + Term 7840 - 7880 3.0 + Prom 7824 - 7883 3.4 6 4 Op 2 . + CDS 7910 - 9328 1720 ## COG0531 Amino acid transporters + Term 9391 - 9439 9.3 + Prom 9331 - 9390 3.3 7 5 Tu 1 . + CDS 9453 - 10859 1490 ## COG1757 Na+/H+ antiporter + Term 10889 - 10940 9.1 + Prom 10946 - 11005 4.9 8 6 Op 1 . + CDS 11215 - 11412 247 ## 9 6 Op 2 . + CDS 11554 - 12132 666 ## EF0637 hypothetical protein + Term 12143 - 12190 10.5 - Term 12125 - 12183 20.2 10 7 Op 1 . - CDS 12184 - 12633 587 ## COG4808 Uncharacterized protein conserved in bacteria 11 7 Op 2 . - CDS 12650 - 12727 61 ## 12 7 Op 3 . - CDS 12772 - 13278 755 ## COG1267 Phosphatidylglycerophosphatase A and related proteins - Prom 13315 - 13374 3.3 13 8 Tu 1 . - CDS 13410 - 14363 1303 ## COG0039 Malate/lactate dehydrogenases - Prom 14453 - 14512 6.6 + Prom 14444 - 14503 6.5 14 9 Op 1 . + CDS 14531 - 14893 282 ## EF0642 hypothetical protein 15 9 Op 2 . + CDS 14909 - 15319 320 ## EF0643 hypothetical protein + Term 15324 - 15375 15.1 - Term 15312 - 15361 7.1 16 10 Tu 1 . - CDS 15366 - 16193 719 ## COG0583 Transcriptional regulator - Prom 16266 - 16325 7.4 + Prom 16226 - 16285 7.6 17 11 Op 1 . + CDS 16335 - 17303 964 ## COG1275 Tellurite resistance protein and related permeases 18 11 Op 2 . + CDS 17326 - 18285 877 ## COG0451 Nucleoside-diphosphate-sugar epimerases + Term 18293 - 18328 4.0 - Term 18237 - 18280 2.4 19 12 Tu 1 . - CDS 18299 - 18646 274 ## COG1733 Predicted transcriptional regulators - Prom 18707 - 18766 4.5 + Prom 18516 - 18575 5.8 20 13 Op 1 . + CDS 18758 - 19375 849 ## COG0778 Nitroreductase + Term 19415 - 19468 2.4 + Prom 19483 - 19542 2.3 21 13 Op 2 . + CDS 19562 - 20575 1136 ## COG0095 Lipoate-protein ligase A + Term 20576 - 20636 21.6 - Term 20568 - 20620 16.4 22 14 Op 1 . - CDS 20646 - 21494 736 ## Bfae_02570 Zn-dependent protease with chaperone function - Prom 21552 - 21611 5.0 23 14 Op 2 . - CDS 21683 - 22009 378 ## EF0652 hypothetical protein - Prom 22036 - 22095 7.1 + Prom 22000 - 22059 8.8 24 15 Op 1 . + CDS 22139 - 22417 238 ## EF0653 hypothetical protein 25 15 Op 2 . + CDS 22422 - 23357 918 ## COG1609 Transcriptional regulators + Prom 23394 - 23453 5.5 26 16 Op 1 . + CDS 23528 - 24124 859 ## COG3560 Predicted oxidoreductase related to nitroreductase 27 16 Op 2 . + CDS 24167 - 25012 1186 ## COG2514 Predicted ring-cleavage extradiol dioxygenase + Term 25026 - 25067 4.3 + Prom 25048 - 25107 5.4 28 17 Op 1 . + CDS 25143 - 25904 894 ## COG1349 Transcriptional regulators of sugar metabolism 29 17 Op 2 . + CDS 25917 - 27317 1435 ## EF0658 hypothetical protein 30 17 Op 3 . + CDS 27405 - 28055 733 ## COG1573 Uracil-DNA glycosylase + Prom 28058 - 28117 4.1 31 18 Tu 1 . + CDS 28230 - 29564 1149 ## COG0534 Na+-driven multidrug efflux pump + Term 29660 - 29703 -0.2 - Term 29541 - 29585 9.1 32 19 Tu 1 . - CDS 29594 - 31420 2110 ## COG1164 Oligoendopeptidase F - Prom 31560 - 31619 8.7 + Prom 31391 - 31450 5.5 33 20 Tu 1 . + CDS 31548 - 32057 340 ## EF0662 hypothetical protein + Term 32062 - 32120 11.6 + Prom 32097 - 32156 2.6 34 21 Op 1 . + CDS 32188 - 32916 957 ## COG0217 Uncharacterized conserved protein + Term 32924 - 32950 0.3 35 21 Op 2 . + CDS 32969 - 33439 454 ## EF0664 hypothetical protein + Term 33496 - 33531 3.6 - Term 33449 - 33484 3.6 36 22 Tu 1 . - CDS 33550 - 33723 315 ## EF0665 hypothetical protein - Prom 33750 - 33809 6.6 - Term 33792 - 33834 10.1 37 23 Tu 1 . - CDS 33836 - 34810 849 ## COG0346 Lactoylglutathione lyase and related lyases - Prom 34889 - 34948 4.3 + Prom 34731 - 34790 4.8 38 24 Tu 1 . + CDS 34841 - 35413 724 ## COG0400 Predicted esterase + Term 35418 - 35466 10.6 - Term 35406 - 35454 6.4 39 25 Tu 1 . - CDS 35555 - 35977 446 ## COG0295 Cytidine deaminase - Prom 36003 - 36062 10.7 - Term 36048 - 36089 -0.1 40 26 Tu 1 . - CDS 36106 - 37626 1916 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase - Prom 37665 - 37724 6.7 + Prom 37742 - 37801 5.8 41 27 Tu 1 . + CDS 37830 - 39479 1575 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid + Term 39523 - 39571 6.4 + Prom 39501 - 39560 3.3 42 28 Tu 1 . + CDS 39588 - 40322 836 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases + Prom 40366 - 40425 6.4 43 29 Op 1 . + CDS 40456 - 41871 1934 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases + Term 41873 - 41926 13.3 + Prom 41889 - 41948 2.8 44 29 Op 2 . + CDS 42015 - 42248 450 ## EF0672 hypothetical protein + Term 42381 - 42434 12.5 45 30 Tu 1 . - CDS 42430 - 43449 720 ## COG3594 Fucose 4-O-acetylase and related acetyltransferases - Prom 43678 - 43737 7.5 + Prom 43560 - 43619 3.3 46 31 Op 1 12/0.000 + CDS 43686 - 44639 936 ## COG1125 ABC-type proline/glycine betaine transport systems, ATPase components 47 31 Op 2 . + CDS 44640 - 46157 1677 ## COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) + Term 46161 - 46232 14.2 + Prom 46216 - 46275 6.4 48 32 Op 1 . + CDS 46299 - 46754 761 ## COG1438 Arginine repressor 49 32 Op 2 . + CDS 46788 - 48296 1647 ## COG1109 Phosphomannomutase 50 32 Op 3 . + CDS 48320 - 48874 462 ## PROTEIN SUPPORTED gi|116334854|ref|YP_796381.1| acetyltransferase + Term 48957 - 49004 15.3 - Term 48945 - 48992 15.3 51 33 Tu 1 . - CDS 48998 - 49861 537 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit - Prom 49975 - 50034 6.4 + Prom 49965 - 50024 8.7 52 34 Op 1 . + CDS 50204 - 52390 2374 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) 53 34 Op 2 2/0.417 + CDS 52453 - 52794 566 ## COG3679 Uncharacterized conserved protein + Term 52806 - 52858 15.1 + Prom 52870 - 52929 5.1 54 35 Op 1 5/0.083 + CDS 52950 - 54185 1300 ## COG0420 DNA repair exonuclease 55 35 Op 2 3/0.250 + CDS 54182 - 56893 2871 ## COG4717 Uncharacterized conserved protein 56 35 Op 3 . + CDS 56890 - 57834 1057 ## COG3481 Predicted HD-superfamily hydrolase + Term 57840 - 57877 6.2 - Term 57829 - 57863 4.5 57 36 Tu 1 . - CDS 57874 - 58902 1415 ## COG0760 Parvulin-like peptidyl-prolyl isomerase - Prom 58939 - 58998 8.4 58 37 Op 1 . - CDS 59066 - 59410 304 ## EF0686 hypothetical protein 59 37 Op 2 . - CDS 59411 - 59836 519 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases - Prom 59938 - 59997 5.7 + Prom 59966 - 60025 5.2 60 38 Op 1 7/0.000 + CDS 60052 - 60789 262 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 61 38 Op 2 1/0.500 + CDS 60791 - 62002 1087 ## COG4473 Predicted ABC-type exoprotein transport system, permease component + Prom 62024 - 62083 5.1 62 39 Op 1 5/0.083 + CDS 62131 - 62910 796 ## COG0510 Predicted choline kinase involved in LPS biosynthesis 63 39 Op 2 . + CDS 62983 - 63627 1002 ## COG0220 Predicted S-adenosylmethionine-dependent methyltransferase Predicted protein(s) >gi|307679215|gb|GL457032.1| GENE 1 637 - 1476 1110 279 aa, chain + ## HITS:1 COG:L132617 KEGG:ns NR:ns ## COG: L132617 COG0656 # Protein_GI_number: 15672315 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Lactococcus lactis # 11 279 3 272 272 350 67.0 2e-96 MITSLADTVTLNNGTKIPGMGLGVFQIPDEETAKVVEEGIINGYRLIDTAQIYGNESGTG AGIKAGLAATGLNREDLFVTSKVWNAHISYDETIQAFNDSLERLGLDYLDLYLIHWPGNN SYKESWQALETLYAEGKVKAIGVSNFQVHHLEDLLSYAKVVPVINQVELHPKLDQKEVRD FCEKHDIKVQAWSPLMQGQLLSNETILAIAENHNKSAAQVILRWDIQQDILLAVKSVHKE RMISNAAVFDFELSAEEMAQINQLNESLRVGPDPDTFDF >gi|307679215|gb|GL457032.1| GENE 2 1499 - 1981 692 160 aa, chain + ## HITS:1 COG:no KEGG:EF0630 NR:ns ## KEGG: EF0630 # Name: not_defined # Def: glyoxalase family protein # Organism: E.faecalis # Pathway: not_defined # 1 160 1 160 160 312 99.0 2e-84 MSEAVKGFSVVNHVGITVSNLDESVKFYEALTGTKIANRDEIGGKRMAQTQGLDDTLIKY ANVHLENINIDLLEYVKPKSEKASYSNEQISAMHMCFEVEDIDAAVARLRAIGVEPDGEP ITFQEEDGLKSGFGTGVAYFTDPDGTNLELIAPKGPFTRN >gi|307679215|gb|GL457032.1| GENE 3 2147 - 3592 1190 481 aa, chain + ## HITS:1 COG:lin2646 KEGG:ns NR:ns ## COG: lin2646 COG1502 # Protein_GI_number: 16801708 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Listeria innocua # 13 481 15 482 482 455 47.0 1e-128 MILSVLTVIYFINAIIAGITILLKPRDVAAIWAWLLVLIALPVFGFFLYLFFGRGLTDKK KFYLQQSDLRELENFQNFQEESFELYSQKMPTEEQQQFTDFFSSLNRMPLTKKNDVEIFT DGTEKFNALMADIKKAQHSIHIEYYAFVTDHIGTKILNLLEEKAAEGVEVRLLYDAFGSK GTKVHHLNELKKNGGFVQTFITSQKALLKFRLNYHDHRKIVVIDGKVGYIGGFNVADQYA GTTKKFGYWRDTHLRIQGPAASLLQMRFLMDWNVSSPEKNRVAYQLDYFFKLEALVPEAN TSIQMIASGPNSDREQIKLAFIKLITSAKKRVWIQTPYLVPDDSVLAALKVAAASGVDVK IMIPDKPDHPFIYRATQYYGRLLMKENIEILIYNGGFLHAKTMIMDDEVCTVGSANQDIR SYKLNFEANAVLYDKKIIDQLEAIFLEDRKKCTTMTPEVVRDMSKWLIFKQQISRLFSPI L >gi|307679215|gb|GL457032.1| GENE 4 4290 - 5546 601 418 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 10 392 16 394 418 236 36 3e-61 MNIIDELAWRDAINQQTNEEGLRELTENTSISLYCGVDPTGDSMHIGHLIPFMMMKRFQL AGHHPYILIGGGTGTIGDPSGRTTERVLQTMEAVQHNVDSLSNQMKKLFGKDAEVTMVNN YDWLSELSLLDFLRDYGKNFNVNTMLAKDIVASRLESGISFTEFTYQILQSIDFYTLHKK HNIQLQIGGADQWGNITAGLDLIRKKEGPEAKVFGLTIPLMLKADGTKFGKTAGGAIWLD PKKTSPFEFYQFWLNQDDRDVIKYLKFFTFLDKEEIDALAEKVEKEPGKREAQRRLAEEV TRFVHDDAALEEAQKISEALFSGNIKDLTIEEIEQGLEHVPTVEITKDAKNIVDWLVDTE IEPSKRQAREDVSGGAISINGDRVTDLDFAVDPTQHFDGKFVVVRKGKKNYFLAKVMD >gi|307679215|gb|GL457032.1| GENE 5 5845 - 7707 2273 620 aa, chain + ## HITS:1 COG:VC1149 KEGG:ns NR:ns ## COG: VC1149 COG0076 # Protein_GI_number: 15641162 # Func_class: E Amino acid transport and metabolism # Function: Glutamate decarboxylase and related PLP-dependent proteins # Organism: Vibrio cholerae # 84 510 87 442 548 120 27.0 1e-26 MKNEKLAKGEMNLNALFIGDKAENGQLYKDLLIDLVDEHLGWRQNYMPQDMPVISSQERT SESYEKTVNHMKDVLNEISSRMRTHSVPWHTAGRYWGHMNSETLMPSLLAYNFAMLWNGN NVAYESSPATSQMEEEVGHEFAHLMSYKNGWGHIVADGSLANLEGLWYARNIKSLPFAMK EVKPELVAGKSDWELLNMPTKEIMDLLESAEDEIDEIKAHSARSGKHLQAIGKWLVPQTK HYSWLKAADIIGIGLDQVIPVPVDHNYRMDINELEKIVRGLAEEQIPVLGVVGVVGSTEE GAVDSIDKIIALRDELMKDGIYYYVHVDAAYGGYGRAIFLDEDNNFIPYEDLQDVHEEYG VFKEKKEHISREVYDAYKAIELAESVTIDPHKMGYIPYSAGGIVIQDIRMRDVISYFATY VFEKGADIPALLGAYILEGSKAGATAASVWAAHHVLPLNVAGYGKLIGASIEGSHHFYNF LNDLTFKVGDKEIEVHTLTHPDFNMVDYVFKEKGNDDLVAMNKLNHDVYDYASYVKGNIY NNEFITSHTDFAIPDYGNSPLKFVNSLGFSDEEWNRAGKVTVLRAAVMTPYMNDKEEFDV YAPKIQAALQEKLEQIYDVK >gi|307679215|gb|GL457032.1| GENE 6 7910 - 9328 1720 472 aa, chain + ## HITS:1 COG:BMEII0909 KEGG:ns NR:ns ## COG: BMEII0909 COG0531 # Protein_GI_number: 17989254 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Brucella melitensis # 5 464 20 484 510 175 26.0 2e-43 MDKQQVKKIELGTFIGLTMALCATVRSIPTLAAVGWTLISYTIFAVLFFAGPIALISGEL STMLPQEGGPQLWVKTALGSKWGFVVAWLLWVQMFPGMVMVASTLGPLLGNTFGNVHLGE NHWFVLGCILVIYWIITILNLKFDMAKVGGNIGVWLGVYIPVLVMFVLGLLSMIKVGLTP GGYLGAFSWSKVLPNLENMDTFKYLAGIAFIFVGIEMSSVYIPRLKDATKNYTKGVFISL IGLVLLNVINAMFVANIVPNGKMELSNITQPILLYCDVLGLPTIIGNIFSFMVFLGVLLQ LSAWVTGPSKTIIQVARDGLLPPKFGFHRENKYGVSRNVVLTQSVVISLFALLYGVMDDV NAVFLTLTNATTIIYSIVYVLIAISLIKLRKSQPDTLRPYRIGKKGNGLAYLVAAMLIFS VIIVIFATLGTTTVTDAVLVALITIVMFVIPLIINRFKKASWATEVKEDLGE >gi|307679215|gb|GL457032.1| GENE 7 9453 - 10859 1490 468 aa, chain + ## HITS:1 COG:NMA0715 KEGG:ns NR:ns ## COG: NMA0715 COG1757 # Protein_GI_number: 15793692 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Neisseria meningitidis Z2491 # 11 448 13 450 459 307 39.0 3e-83 MKSTKPTVSFAESLGILIALLAILGYLIIGQKLTPHIPILFVFMLLLLYGKWKGFSWDEI HEGIVEGIKPGIIPIIIFLLIGVLVATWILSGTIPTIMVYGFKIISVKFFLPTVFVVCAL VGVTVGSSFTTVSTMGIAFLGIGHILGFDNAMTAGAVVSGAFLGNNISPLSDTTNLAAGI GGVNLFEHILNMMYTVIPAFIISIVGYIFLGHQSGSADLQSVDAMVQTLHQGFWISPITL LPVAVLFLFAWKKVPAIPTLLVGSTVAVILAFINDHHLSLAKVSTILMSGYVADTGDQSI DTLLSRGGIESMLGSAALIILALGLGGLLIKFNIVATLIDKIKGYVNNPAKLIALTALSS VGINLLVGEQYLSIILPGETFKSSFTRLGIDKKYLTRTLADAGAAVNSLIPWGVSGTFIM GTLKVGALEYLPYAFFPLLCPIITVILGIFLKKQQGENKKAPGTNVEL >gi|307679215|gb|GL457032.1| GENE 8 11215 - 11412 247 65 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKIGLISSAFLLTLALAACGGGKSTENTDSRSSAAESTTVESTKASATKESSSKAATKS SDAKP >gi|307679215|gb|GL457032.1| GENE 9 11554 - 12132 666 192 aa, chain + ## HITS:1 COG:no KEGG:EF0637 NR:ns ## KEGG: EF0637 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 192 114 305 305 335 98.0 5e-91 MFPSQGLPQAILTSQTNNFLTAATTSQADQNNFRVLYYAEKEAIPVNDARVNQLTPISSF EKKTYGSDAEAKNAVNQIIDNGGQPVDLGYNITGYKQGAAGSSYLSWQEGNWSLVVRASN INGESPDDLAKNVVNILEQETLPAPNTVGQITLNVAGTTDYNRNSVVWQAGTVVYSVHHF DPIQAVKMATSI >gi|307679215|gb|GL457032.1| GENE 10 12184 - 12633 587 149 aa, chain - ## HITS:1 COG:STM2156 KEGG:ns NR:ns ## COG: STM2156 COG4808 # Protein_GI_number: 16765485 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 3 149 6 152 152 106 43.0 2e-23 MKKFLRVFLIFIGVFFLASCGSKIETKTFVGSPQDGIDSTLTYTYQGDKVLTQTAKNIVS YDKLGITKEEAKTALEPVSKQYEDIKGLDYKLTYEDKQAIEKLTINYEKLDYDKAKKVDG IQIDGDSSKGISMKKSQELVESQGYTEQK >gi|307679215|gb|GL457032.1| GENE 11 12650 - 12727 61 25 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLDFSQAFYLTVIICRVMLQLRINS >gi|307679215|gb|GL457032.1| GENE 12 12772 - 13278 755 168 aa, chain - ## HITS:1 COG:lin2497 KEGG:ns NR:ns ## COG: lin2497 COG1267 # Protein_GI_number: 16801559 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylglycerophosphatase A and related proteins # Organism: Listeria innocua # 1 162 1 162 166 196 67.0 1e-50 MVIQGDTLENSARRLLQERGVTMNDLAELVLFLQKDYIDNLTLDTCLESVDAVLTKREVH NAIITGVQLDILAEENKLLSPLQEILTEDEGLYGIDEIMALSIVNVYGSIGFTNYGYIDK VKPGILKELNAHDGEHVHTFLDDIVGAIAAAAASRLAHSQPDLSDITK >gi|307679215|gb|GL457032.1| GENE 13 13410 - 14363 1303 317 aa, chain - ## HITS:1 COG:L0018 KEGG:ns NR:ns ## COG: L0018 COG0039 # Protein_GI_number: 15672358 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Lactococcus lactis # 1 314 1 314 314 450 71.0 1e-126 MKVFNKKVAIIGTGFVGTSIAYSMINQGIANELILVDIDKAKSEGEAIDLLDGVSWGQEN VNVWAGDYQDCQDADIVVITAGANQKPGQSRLDLVSINAEIMKTIVNNIMKSGFDGILVI ASNPVDVLTYVAWQASGLPVSRVIGTGTTLDTTRFRKELSQRLAIDPRNVHGYIIGEHGD SEVAVWSHTMIGTKPILEIVDTTERLTSDDLPIISDKVKNTAYEIIDRKQATYYGIGMST ARIVKAILNNEQAILPVSAYLDGQYGQQDVFTGIPAVVGNQGVTDIIELNLNAAEKELFQ KSVTQLKQVMASLQPNA >gi|307679215|gb|GL457032.1| GENE 14 14531 - 14893 282 120 aa, chain + ## HITS:1 COG:no KEGG:EF0642 NR:ns ## KEGG: EF0642 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 120 1 120 120 214 98.0 1e-54 MTTTTVYYASNNEKQPNRFQLVIGSCSYELPKIEIYEILECIALAYGYQKEPFIEEQTEC FVKGNRCIHVSQQATTLTFVVNDLRLVMEKQCRNHEEVFQEVNHILLNIFEETPCVFLEK >gi|307679215|gb|GL457032.1| GENE 15 14909 - 15319 320 136 aa, chain + ## HITS:1 COG:no KEGG:EF0643 NR:ns ## KEGG: EF0643 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 136 1 136 136 207 98.0 1e-52 MKQVKITTTSDLINGGCNACPNVKCTNYLVHVEDETIALETLTVADLVTLLALKEGFRQK LVMEMFEEYTMFERETHQVVFKEEETRILFQSKKQTIQSTLLCKEPQQVFQETQQILHQL FELEPFEFELVEETDK >gi|307679215|gb|GL457032.1| GENE 16 15366 - 16193 719 275 aa, chain - ## HITS:1 COG:L0220 KEGG:ns NR:ns ## COG: L0220 COG0583 # Protein_GI_number: 15672356 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 241 1 242 272 153 35.0 3e-37 MFEWIKTFIAVYETKNFSAAAKQLYISQPTVSLQIKKLEQHFSIKLFYRNGKQSVIPTKE ADFLYPKMLSIIESLTTSFAQAAEKENFKEDCIIASSNTVAIYLLPDIMESLVTAFPLIN FSIQLMNSNEVVDMVQNNHAHIGLIEKPIETKNLHKEIVYEDQLVLAGDAASKFWLLREK NSGLRFFNELYLNEHSINLPIIELNNNEVLLQLLKNNIGQSIVSRLSISDEIPWQPIDQS FASRKIFIVQTDHHANTSFSEVYNRIVEKIRERQT >gi|307679215|gb|GL457032.1| GENE 17 16335 - 17303 964 322 aa, chain + ## HITS:1 COG:L181867 KEGG:ns NR:ns ## COG: L181867 COG1275 # Protein_GI_number: 15672360 # Func_class: P Inorganic ion transport and metabolism # Function: Tellurite resistance protein and related permeases # Organism: Lactococcus lactis # 8 309 9 307 324 249 53.0 4e-66 MVESAKKFLRKVPIPICGLILGMVSLGNLLYSLGYATIGTIYCVLGSLLMILVILKIIFT MKHALSTLDDPIIASVSPTFTMALMVICVFLDRIFTNAVWINVLWIGAVILHFILMIYFV AVHIFPTKIELEHIYPSWFITFVGIGVIPNTSQLFINELGKIVFWVALFFYLLLLPILIK RITKSKEMPESTIPLLTIMTAPGSLCLAGYISMGGHLYMPLVVFLLILSQCIYGIVVVNL YKIMQVTFYPSYAAFTFPLVISATALVKVKPLFAEKVGLTSLLNILSTFELLLAVAIVSY VFIRYCIFLFQRENNTKKVELN >gi|307679215|gb|GL457032.1| GENE 18 17326 - 18285 877 319 aa, chain + ## HITS:1 COG:L12335 KEGG:ns NR:ns ## COG: L12335 COG0451 # Protein_GI_number: 15672193 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Lactococcus lactis # 4 312 7 310 313 328 55.0 8e-90 MKKLLITGGAGFIGSNLANFYSQQYQVFVIDDLSMGRVSNLQQTEQLVFIKGSVTDQQLL DEVLSKHSFEYIFHLAAVASVASSVAQPLETHEVNFLSVLKILESIKKYQKELKRFVFAS SAAVYGAEPTLPKRETSVICPLSPYAIDKFAAERYVLNEYHLHGVPTSAVRFFNVYGPNQ NPASPYSGVLSILMDRYIQLEQGQASQFQIFGDGQQTRDFIYIEDVLTALNLVATKSEAL GHVYNVGTEVAISLNQLIEEMNQLVGLSLPVSYQKERDGDIKYSLSDSSALKGLGFSPVY SIQEGLQKYLKFTHNTQNR >gi|307679215|gb|GL457032.1| GENE 19 18299 - 18646 274 115 aa, chain - ## HITS:1 COG:alr2106 KEGG:ns NR:ns ## COG: alr2106 COG1733 # Protein_GI_number: 17229598 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Nostoc sp. PCC 7120 # 5 103 9 103 110 97 47.0 5e-21 MSQGETMTTDKQTSINLALSTINGKWKLSLMDELFQGTKRNGELMRALDGITQRVLTDRL REMEKDGLVHRESFNELPPRVEYTLTPEGYALYDALSSLCHWGETFAQKKARLNK >gi|307679215|gb|GL457032.1| GENE 20 18758 - 19375 849 205 aa, chain + ## HITS:1 COG:BS_yodC KEGG:ns NR:ns ## COG: BS_yodC COG0778 # Protein_GI_number: 16079013 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Bacillus subtilis # 5 204 6 202 202 129 37.0 3e-30 MMYQDVVRSRRSVRDFMPDVEIPKEELMAIIEEAMFAPNSTNLNSWRFLIVTEKEQKEAL YEVSMQQPAVKGAAAVIILLGDLTAYTVANADEISAKAVAQGTMTEEIRQGINENVSWYY DVSEEQKREWLMLDQGLVAMQLMLSAKDRGYDTVAMSGFETEAVRKLFNIEDHLVNGLII PIGKAQTPGFETVRRDVSEVVTWLD >gi|307679215|gb|GL457032.1| GENE 21 19562 - 20575 1136 337 aa, chain + ## HITS:1 COG:lin0931 KEGG:ns NR:ns ## COG: lin0931 COG0095 # Protein_GI_number: 16800002 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Listeria innocua # 9 335 10 330 331 305 48.0 1e-82 MRYVIMQSRDIRENLATEDYLLNTLSFEEPLVLFYIQEPCVILGRNQNAYEEIDLAYARE KGIVITRRLSGGGAVYDDLGNVSFSFVVQEGHQAFGDFKAFTKPIIEALHKMGATGAEIS GRNDLLIDGKKFSGNAMYTKKGKMYTHGTLMYDVDLAEVQRVLTVSKKKIESKGTKSVRG RVTNLRPYLDEKYQQLTIEEFRNRLLMELFDVESLTEIAEKEYVLTKADQQEIRKLVAEV YGNEAWIFGEAPKFTIKKEEKFKGGIVDARLTVEKGKIIELTIYGDYFAKKETAEIVAAL LGVDYQYSSIWQALAAFNFEDYFVNITKEEFVHLLVD >gi|307679215|gb|GL457032.1| GENE 22 20646 - 21494 736 282 aa, chain - ## HITS:1 COG:no KEGG:Bfae_02570 NR:ns ## KEGG: Bfae_02570 # Name: not_defined # Def: Zn-dependent protease with chaperone function # Organism: B.faecium # Pathway: not_defined # 16 274 53 326 441 135 30.0 2e-30 MCQPQEKKKEISVAKLRYRFELPMIIIGFVLLFLALGLVALLILSDLPIPDWLLIVLIAP IAPVIAFFTIRYMYMDTASNGVEITENQLPEIYSLYIDLAKEMGFGTKKLRMPRLYLING NGVLNAFAAKCSLHRRYVVIHSDLLDIAYNTGDFSLIRFILAHELGHHKCGHTNLWRLML SIILKPVALDKSFTRTQEYTADRAGLYYAEEGALSMIYLFSGKYMGSRVDLEEYFHSIDL HDDTIWLKLSNFLSDHPVGFRRMQTLKKAKDTGNWEVHGKFF >gi|307679215|gb|GL457032.1| GENE 23 21683 - 22009 378 108 aa, chain - ## HITS:1 COG:no KEGG:EF0652 NR:ns ## KEGG: EF0652 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 108 1 108 108 172 99.0 5e-42 METVTVATKSDLLTNLNKQTDEIIISGALAQEIYHLKKQQLTETEEMGFLVGSQGAGSFL TYLIEKLSYINSALSPEEQKIEHAILRLYVIKKLTPETTLLCLKQLDY >gi|307679215|gb|GL457032.1| GENE 24 22139 - 22417 238 92 aa, chain + ## HITS:1 COG:no KEGG:EF0653 NR:ns ## KEGG: EF0653 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 91 1 91 92 169 100.0 3e-41 MNVIVEISDRLGMDYYFVSVTTTAKSLQLNSPKKYYKIWHQEIPYHQITEWHLTQQEDIQ EISFAWQETFYRFVDYGTGIVPYLTQFCKVMG >gi|307679215|gb|GL457032.1| GENE 25 22422 - 23357 918 311 aa, chain + ## HITS:1 COG:lin2880 KEGG:ns NR:ns ## COG: lin2880 COG1609 # Protein_GI_number: 16801940 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 305 1 316 318 248 40.0 9e-66 MTTIREIARLSGSSVTTVSRVINHHPYVSEEKRLKIQAIIDELGYKPNILARNLSFGKSN TLGVMVPYTNQPYFDAILSGIIHQAFQQGMMVSLLPTDYDKEVEKSYLEKMATGAFDGMI VLSKANPLSVFAPYKEQVVFCEKIEDPSYASIYIDRLTVYRRVFQALKQQGCSEVAITIN RAPEKSTSACYLVDAYQEIYGVIPENRLFKDCLTYEDGCEVGRHCGQDPTLQAVVTNGDE IAAGIQAVIERPLFLVGQEQTLLSEILNFSTICHPLMELGEKATHLFQEKRPKTIQLTST FINRQPDFSFS >gi|307679215|gb|GL457032.1| GENE 26 23528 - 24124 859 198 aa, chain + ## HITS:1 COG:BMEII0772 KEGG:ns NR:ns ## COG: BMEII0772 COG3560 # Protein_GI_number: 17989117 # Func_class: R General function prediction only # Function: Predicted oxidoreductase related to nitroreductase # Organism: Brucella melitensis # 6 197 7 198 199 231 56.0 8e-61 MSKFTEMMKNRRSIYALGENLPISKEEVTALVKEVVRESPTAFNSQTQRVVFLFGDAHKK LWAMTEDALKPLTPAEAFPNTQAKLQGFAAGAGTILFFEDTDIVKNLQDSFPLYADNFPV WSEQATGLTQANVWTALAQENIGANLQHYNPVIDEAVAAEWSIPANWNLRAQMVIGSIEA PAGEKEYMEDSARFKEFN >gi|307679215|gb|GL457032.1| GENE 27 24167 - 25012 1186 281 aa, chain + ## HITS:1 COG:lin0649 KEGG:ns NR:ns ## COG: lin0649 COG2514 # Protein_GI_number: 16799724 # Func_class: R General function prediction only # Function: Predicted ring-cleavage extradiol dioxygenase # Organism: Listeria innocua # 13 279 12 278 279 186 41.0 3e-47 MVQALPSNIGIQQVTLKVADLDKMVNFYTKTIGLKLLKQGEGRAWLAPQGTNDAILVLKE LTAGEESQGTTGLYHIAFLLPTRKDLGNMLLWLLQENVQIGAADHGYSEALYLSDPENNG IEIYWDKPEEVWDIRPNGEIIGVTEELDGDSLAAEADGHWLGISEGSKIGHIHLKVADLD TTETFYKNLGFGLKSNFGQQAKFFAAGQYHHHIGTNTWSGKQLPTIQENQFGLENYTFRL PTAADLEIVQANAEEAKLHFIAKDHLLALEDPSGMIIQFTY >gi|307679215|gb|GL457032.1| GENE 28 25143 - 25904 894 253 aa, chain + ## HITS:1 COG:L0153 KEGG:ns NR:ns ## COG: L0153 COG1349 # Protein_GI_number: 15673279 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Lactococcus lactis # 1 253 1 253 253 243 51.0 3e-64 MLIEERLAKIQKIVNEQKSISMEALAEQVSVSKDTIRRDLIRLEKEGHLKRTHGGAISVQ SEATIYDYAQRIMKHPEKKQAIAQKVWANIPKQASIFFDSSTTVEAAIRAMENSPIHAIT NSLSHALLLAQMDQTKITVLPGQLHKQQLFLFGAETVAKVGEFAPDYTLLGVFALSEQGL FIHTEEEGQVKRRMIQQGKQVIALADQTKLNKTGLFKICELTEIDCLVTDTRPDEKFCEQ LAQAGVTLIVADE >gi|307679215|gb|GL457032.1| GENE 29 25917 - 27317 1435 466 aa, chain + ## HITS:1 COG:no KEGG:EF0658 NR:ns ## KEGG: EF0658 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 466 1 466 466 927 98.0 0 MKRKINYTHIAEPTVFENVFPTYLTNETMMARKQKVLQRMETEKFDQLVFYADKEHGSNF EYLTGFIPRFEEGLLVLNKDGATTLILGNENLKLCQHARISADLIHYPAFSLPNQPMAGE QKLSQIFETLLDETAQKIGIVGWKMFTTQQQEPATMFDVPHFIVEALKKALPKEARLLNG THLLIGAKGARTTNNANELAHYEYGANLASRSMLKALNAIEVGQRETDIGALLNDEGQTP TVVTIAATGQRFEYANMYPTAKEIQLGDALSLTTGYKGGLSSRTGFVIENEQQLPEAQRD YLERVAKPYFQAVVHWLETIRIGLLGREMYQAIEEQLPKEIYHWHLNPGHLVSDDEWMSS PIYPDSAIRLESGMLFQVDIIPSVPGYTGVSAEECVALADETLQKEIQQTYPDMWQRIAT RKAYLKETLKIDLPTEVLPMSNLVGYLRPFYLAKDKALCVEKPALK >gi|307679215|gb|GL457032.1| GENE 30 27405 - 28055 733 216 aa, chain + ## HITS:1 COG:CAC0219 KEGG:ns NR:ns ## COG: CAC0219 COG1573 # Protein_GI_number: 15893511 # Func_class: L Replication, recombination and repair # Function: Uracil-DNA glycosylase # Organism: Clostridium acetobutylicum # 22 203 25 188 199 113 34.0 3e-25 MHYPEHLKKAVLAKAKDLPLEGFVEGQGPQQPKVMLIGEAPGKEEIKENVPFIGRSGQLL MEQLQQVGLSRETVYITSAVRSRPFSVKTKQIAKTGERVTKFPNRTPTKEEIKIFAPLLD WEIAVCQPELILTLGNIGLQRLLGPKPTITAVHGTVIQSPIQTFDEQSQNYHWTQKTYQI IPLFHPAAVFYNYRLKEVVKEDWQVVQKQLQLLKKV >gi|307679215|gb|GL457032.1| GENE 31 28230 - 29564 1149 444 aa, chain + ## HITS:1 COG:lin2192 KEGG:ns NR:ns ## COG: lin2192 COG0534 # Protein_GI_number: 16801257 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Listeria innocua # 1 441 5 443 443 173 27.0 7e-43 MEQTQQNHFTALFYKNVLLGILSMAAQSIFILADTFFIANGIGTEALAGLNIVLPLVNII NGLGWMFGVGGATLFSTTVAQKEIKKANQYFSLTIGLVFVIGSLFTLVSLIFSDQIIRGL QGTGVLFGLAKEYYMIYLSCSLLFIFNNCLITFLRNDHNPRLATIAFVSGGIVNIILDYV FIYQFGWGMAGAAIATVMSPLTSLILITLHKWSPQRVLRFEKFKVKFQDVREIMSIGFSS FLNEFSSAFVMFLFNIVLLNLVGHVAISAYAIVANLNIIVIAIFTGIGQGAQSLLSRYYG LGETKVLRKFVKLSFITYLVAGFLFFLISQVFTGQIIEVFNSEGNDQLAQIARTAIRLYA ISFLFTGLNFMGIYYFSAVRKPKMALMISSLRGFFLIVPVLFILVKLLGLTGVWLAMPVV EFVTFGLMLVGYLAYRNYLKKEKQ >gi|307679215|gb|GL457032.1| GENE 32 29594 - 31420 2110 608 aa, chain - ## HITS:1 COG:lin1528 KEGG:ns NR:ns ## COG: lin1528 COG1164 # Protein_GI_number: 16800596 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Listeria innocua # 9 607 5 601 602 576 49.0 1e-164 MKEGLDMTYSITWDLDSIFPNGSESKELSQRMTQLTEQTKEYHQLITEWTPESAQGKEQF AEILTLQGKISNGFSQCNSFLTALISANTNDTKAKILSGDLYNLLPAIQLAETIFTKKIT EISAEHWQALLAEEPFKTMAFRLNELRRDGKKLLSEQEENIINTLSLDGLNAWSTHYDTI VASIVIPFEEKDGSVTELSAGQAFNRMMGDPDKEVRQRLFTAWEKAWSGKASILADTLNH LDGFRLSDYKLHGTTDYLENPLNYNRMSQETLTVMWETIQKNKQPFVDFLTRKAQLFGKE KMDWQDQDAPIILGDLEEKTYSFDQAAAFILENFRKFSPKMADFAQMAFEKSWIEAEDRP GKRPGGYCTELPETQESRIFMTFGNSINEVATLAHELGHAFHSSVMWDLPSLNREYAMNV AETASTFAELIVADATLKEAKSDVEKINLLDTKMQNAIAMFMNIHARFIFENNFYQARQK GLVAEEDITELMLAAQKESYKDSLGSYHPHFWASKLHFFIDDVPFYNFPYTFGYLFSMGI YAYANQQGSSFEDQYIALLRDTASMTSEELAKKHLNVDLTKPDFWQAGIDQVLKDVEQFM TLTENYVN >gi|307679215|gb|GL457032.1| GENE 33 31548 - 32057 340 169 aa, chain + ## HITS:1 COG:no KEGG:EF0662 NR:ns ## KEGG: EF0662 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 169 1 169 169 319 98.0 3e-86 MKNYLKDSNLYLVIAFVIMAILFFSSSQTYEQQSQVGLLDKLLSSHPFEEQLKNISFQYA GSEVSIQASGYSKFVEFFIRKGAHFGTYFLLGGSWFIGLVPRIKGLFLTAVVSWLAATGY AGLDEFHQMITGGRTPLFQDVMLDAMGALTAIVICLVVHGLKKNKKRRR >gi|307679215|gb|GL457032.1| GENE 34 32188 - 32916 957 242 aa, chain + ## HITS:1 COG:lin1570 KEGG:ns NR:ns ## COG: lin1570 COG0217 # Protein_GI_number: 16800638 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 240 1 239 241 297 62.0 1e-80 MSGHSKWSNIQGRKNAQDAKRGKIFQKVSREIYMAAKAGGPDPAMNPALRLAVDKAKSAN MPNDNIARAIKKASSAGEGEHYDEVTYEGYGPGGVAVLVHALTDNRNRTATNVRVAFTRN GGSLGETGSVNYMFDRKGYIVIKREDHAIEEDDMLEVVLEAGGEDLETSPEVFEIYTAPE DFTAVRDALEQAGYSLAQAELTMVPQTLLTLNDEQKAQLESLVDKLEDDDDVSEVFTSAE NL >gi|307679215|gb|GL457032.1| GENE 35 32969 - 33439 454 156 aa, chain + ## HITS:1 COG:no KEGG:EF0664 NR:ns ## KEGG: EF0664 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 156 1 156 156 295 100.0 3e-79 MEGILKKRICLQAIREEAEAYYRNGDFYCSEAIVATIRQHFDAEIPIEAVAMASGFPVGV GGAKCICGALSGGVMCLGYFFGRTEAKGEQVNKTMALANELHQSFRQKHRVVCCSILTSK MTMGSPEHMEQCIGFTGEIAETTAKIIARELAYELV >gi|307679215|gb|GL457032.1| GENE 36 33550 - 33723 315 57 aa, chain - ## HITS:1 COG:no KEGG:EF0665 NR:ns ## KEGG: EF0665 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 57 1 57 57 73 100.0 3e-12 MLSKEEVLHLLNEAKKEVDRLETNRQEDLGNSINYIENELQLQRVLSQVEAYEKVLG >gi|307679215|gb|GL457032.1| GENE 37 33836 - 34810 849 324 aa, chain - ## HITS:1 COG:BS_ykcA KEGG:ns NR:ns ## COG: BS_ykcA COG0346 # Protein_GI_number: 16078352 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Bacillus subtilis # 5 318 6 312 316 181 37.0 2e-45 MYAQIHHISILNRLIKPTFDFYHNTLGLKLLMKTINQDDHTMYHLFFSDNEQRTGTELTF FELNDGQDQSFGTNTIERTILKVPTRASLDFWAERLEQAGICHYGVETFNQHPILRFEAP DNTQMALVPLREFENAEDYFPAEHAEIPVEHAILGIDAIQLRVQYAAATKQPLVDYLHWH EKETVPFFETAHEVTVLENHHPQFYQEVHIIDDRTNPLAIEGIGGVHHVAFGVEDTQELT QVDSLLEEKNFTNSGIKDREFFKSLYFREPNHLLFEVATQKGLLDAEAYENQSSNFDEIP LYLPHFLADQRERIEAILAQQRHE >gi|307679215|gb|GL457032.1| GENE 38 34841 - 35413 724 190 aa, chain + ## HITS:1 COG:BS_yodD KEGG:ns NR:ns ## COG: BS_yodD COG0400 # Protein_GI_number: 16079014 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Bacillus subtilis # 1 188 1 193 200 62 28.0 5e-10 MKQFFQKGSKPNQLVVAFHGTGGNEYQLLTTIATLYPEASVLSYLGTEGVGEQRRFFAPL VNGALPRANFDERVTAFLEEVWQPQKLYDEVIFIGYSNGANFILGLLEKNPTIANTVILL HPSNLGYQYVSGEFATKVIVTTGAQDELSIPGQVLSLANQLKKHFPVDFLLVDGGHGLSE EEVTKIKEVL >gi|307679215|gb|GL457032.1| GENE 39 35555 - 35977 446 140 aa, chain - ## HITS:1 COG:SP2068 KEGG:ns NR:ns ## COG: SP2068 COG0295 # Protein_GI_number: 15901887 # Func_class: F Nucleotide transport and metabolism # Function: Cytidine deaminase # Organism: Streptococcus pneumoniae TIGR4 # 1 136 1 137 144 176 57.0 9e-45 MDIWKKMYEYAKKEYHPQEVTPFIYTHHVVCALEAEDGQLFTGFCFESCCGVLDLCAERV AALNMYADSGQTVIKRIITFRDDVPNGISGMPCGACRELLLQLSPKNADTEILVDYQKRE IVRLKELMPKWWGWSRYTND >gi|307679215|gb|GL457032.1| GENE 40 36106 - 37626 1916 506 aa, chain - ## HITS:1 COG:SPy0388 KEGG:ns NR:ns ## COG: SPy0388 COG0769 # Protein_GI_number: 15674533 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Streptococcus pyogenes M1 GAS # 3 501 2 478 481 456 50.0 1e-128 MTISLFAIRDCLEKEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFCKG LNFKEIYLENAVKDGLEIYVSEVPYEVPAQLGIIVTDIKKAMAVLSMAFYDYPQNKLKLI GFTGTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMA TAVANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQL ITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSDDSLRFIVASP ADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESLTNTN GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA DLYQKVNGVDEPYAGDFALAKMIIDK >gi|307679215|gb|GL457032.1| GENE 41 37830 - 39479 1575 549 aa, chain + ## HITS:1 COG:SP1529 KEGG:ns NR:ns ## COG: SP1529 COG2244 # Protein_GI_number: 15901374 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Streptococcus pneumoniae TIGR4 # 19 548 1 528 529 447 47.0 1e-125 MINQPNSVDQPILTNQEKMVKGSAWMTASNIISRMLGAIYIIPWYAWMGEHGNEANSLFS MGYTIYALFLMISTAGIPGAIAKQTSHYNSLNEYKISRQLFYRALQLMGGLGVVFAIVMY LASPALAALSGGGPELVPTMRSLSLAVLVFPSMSVIRGYFQGNQEMMPFALSQIVEQVAR VFYMLLTAFIIMKVFEGNYVTAVTQATFAAFIGMLASFAVLGYYMYKQKPLFDYLEEHSA NEHEIAPKELLIETFKEAIPFIVVGSGVTVFKLVDQFTFSNFMRLFTDYSDTQLRELFGI FNANPDKLTMIVVALATSISATGLPLITEAVTLKNHRELARLISNNLQLFVFVMLPATFG MIVLAQPLYTVFYMPDALGTSLLVQACYASLFLGLYMLVSNMLMGMYENRDAMRYLGIGL AVKLIVQFPAIRLFEVYGPLLATMIGFTVSCVLILRRIRQVTRFNYKLTLRRTLLMFCIT VIMMIIALIFRQFLYLFLDPTRRFQAFIIVVIVAAAGGAFYGYSVLKIRLADRLLGKNAA KLRAKFNIK >gi|307679215|gb|GL457032.1| GENE 42 39588 - 40322 836 244 aa, chain + ## HITS:1 COG:lin2436 KEGG:ns NR:ns ## COG: lin2436 COG1187 # Protein_GI_number: 16801498 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Listeria innocua # 1 239 1 233 233 267 59.0 1e-71 MRLDKFLADVGIGSRKEIKQLLKKKVVTVNGDVVKEAKTQVNEETDQIALMGEILTYQKF FYYMLHKPQGVISATEDQRDETVIDLLTDQDYRADLFPVGRLDKDTEGLLLLTNDGQLAH QLLSPKKHVDKEYLAEVEGLVTAEDCQLFAQGFALKDGEIVKPSRLVIETINEEEGTSVV RLVIQEGKFHQVKRMLATVGKPVTYLKRLRMGELWLDETLELGGYRPLTEAELQQLQPKQ SYLN >gi|307679215|gb|GL457032.1| GENE 43 40456 - 41871 1934 471 aa, chain + ## HITS:1 COG:SPy1070 KEGG:ns NR:ns ## COG: SPy1070 COG0624 # Protein_GI_number: 15675062 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Streptococcus pyogenes M1 GAS # 2 471 3 469 469 551 58.0 1e-156 MTIDWTKEVEARKDDLLEDLQNLLRINSERDDAQATPEAPFGPGPVAGLKHMLAYGERDG FTVKNVDNYAGHIEYGEGDETLGIFGHMDVVPAGDGWETDPYEPVIKDGKIYARGASDDK GPSMAAYYAMKIIKELGLPVSKKIRFVVGSDEESGWGDMDYYFQHEEAPDFGFSPDAEFP IINGEKGNVTIRLTFRGGNGADYKLESFKSGLRENMVPGTADAVVTAASADEAASLAASF ETFIKQEAKISGNAELSDKTVTFHVVGKGAHGASPQSGINAATFLATFLNDYSFAEGAYS FINTIAEFIHEDFYGEKLGVAFEDEKMGKLTMNAGIVNFDPENPENSLVTLNFRYPKGTS AEELQAKVQATVGETVTATQGDRNQEPHYVPVDDPLVATLLQVYEDHTGEKGQEQIIGGG TYGRLLKRGVAYGAMFPGYTDTMHQANEFMELDDLFRAAAIYADAIYRLAK >gi|307679215|gb|GL457032.1| GENE 44 42015 - 42248 450 77 aa, chain + ## HITS:1 COG:no KEGG:EF0672 NR:ns ## KEGG: EF0672 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 77 1 77 77 132 100.0 5e-30 MSETLIVNYLIKGRVKMNVEELVQKAKDLIGEGNVEHAQQFIEEHKDELGEHYHKITAML ADTTTDGLFDKIKGLFQ >gi|307679215|gb|GL457032.1| GENE 45 42430 - 43449 720 339 aa, chain - ## HITS:1 COG:lin0994 KEGG:ns NR:ns ## COG: lin0994 COG3594 # Protein_GI_number: 16800063 # Func_class: G Carbohydrate transport and metabolism # Function: Fucose 4-O-acetylase and related acetyltransferases # Organism: Listeria innocua # 5 286 7 288 343 103 30.0 4e-22 MENDKRIYKWDNVKLFLIFLVIFGHILDREASPSRLMETINFWIYSFHMPAFIFVSGLFS KHAIKQRKYLRLLSFVWLYLLAKLLITLANFAFANKMNFDLLNETGVPWYLLSLASFYLI TIFLQRVQPKIMLPIIIVIGCASGYLPVEGFLSLGRTLGFFPFFYCGYLMDIQKLQTFLD HRKVKWAAIGVILSSFLFVNSQWSLATKFWGFLTGWASYAEISPAFEYSSFIQLFFYVAA ALVSLSWFALLPKRKLPLSALGKDTLYPYLLHMPLIILLESGLQLDTLFKEWFTFRILAL FFLALFILAITNMPVVKRGADYLFNPIAYVLPKQWLKVK >gi|307679215|gb|GL457032.1| GENE 46 43686 - 44639 936 317 aa, chain + ## HITS:1 COG:lin1460 KEGG:ns NR:ns ## COG: lin1460 COG1125 # Protein_GI_number: 16800528 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, ATPase components # Organism: Listeria innocua # 1 317 1 325 327 306 50.0 3e-83 MIKFQNVSKVYQENAVLSDVNLTIQQGEFFVLVGPSGSGKTTTLKMINRLIEPTTGEVAL NEQAVTNYPLRELRLKIGYVLQQIALFPNLTVAENIELIPEMKKWPKEQRRERTIELLKK VQLDPEEYLHRKPAALSGGEQQRIGILRAIAAEPEVILMDEPFSALDPISRHHLQRLVKE LHQELASTIVFVTHDMNEALLLGERICIMDAGKIIQVDTPEAIQKHPKNNFVGQFFKQSS PELANYCGADLTAFLEAADETIEPVPTVFMETNLKEIVQLINAQEKANLVEKQQVLGCIT SKTITRFMEQLLESEGQ >gi|307679215|gb|GL457032.1| GENE 47 44640 - 46157 1677 505 aa, chain + ## HITS:1 COG:SP1860_2 KEGG:ns NR:ns ## COG: SP1860_2 COG1732 # Protein_GI_number: 15901688 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) # Organism: Streptococcus pneumoniae TIGR4 # 212 505 5 298 299 340 58.0 4e-93 MQALIETFFARKEEYLQALIEHMQLSFISLLFAALIAIPLAIYLTSHRKLAESLLQVTGI FQTIPSLALLGLLIPLIGIGRPPAIVALVIYALFPILQNTYTGLTEIDPSLEEAAEAFGM SKKEKLFKFELQMALPFIISGIRTATVLIIGTATLAALIGAGGLGTFILLGIDRNNLSLI FIGALSSAALAVLFNYGIHWLEKANGRRLIIGGTILGLLLGGSFFWNQQTSSKEKQLTIA GKLGAEPDIIINMYKALIEENSDIQVTLKPNFGKTTFLYNALKSDEIDLYPEFTGTVIET FLKNPPQLDNQPQVVYEAARAGLKKQENLTLLKPMRYENTYAVAVKRSFAKAHQLKTISD LQKISNQLKAGFTLEFIDRQDGYKGLQEKYHLNLNVQSMEPALRYQAINNGEVNVIDAYS TDSELRQYDLVTLEDDQALFPPYQGAPLIKTATLEKYPELAEILNKLAGKISEEEMSEMN YQVNVEGQDPSIVAKDYLKEKNLLK >gi|307679215|gb|GL457032.1| GENE 48 46299 - 46754 761 151 aa, chain + ## HITS:1 COG:lin1404 KEGG:ns NR:ns ## COG: lin1404 COG1438 # Protein_GI_number: 16800472 # Func_class: K Transcription # Function: Arginine repressor # Organism: Listeria innocua # 1 150 1 149 149 106 38.0 1e-23 MKKAERQRLIKQLIMQQEIETQDELITRLEEIGVRATQATVSRDIREMSIVKTHGADGRV KYAIFSQAQGTSSEEKLRESVKDSVVRMERVQFIVILHTEMGNADVVSNFLDEVAYPEVA GTVAGADTIIVITRSEEDAEHFIERIENMIF >gi|307679215|gb|GL457032.1| GENE 49 46788 - 48296 1647 502 aa, chain + ## HITS:1 COG:lin1985 KEGG:ns NR:ns ## COG: lin1985 COG1109 # Protein_GI_number: 16801051 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Listeria innocua # 4 489 9 495 503 540 56.0 1e-153 MAELKALQNGSDIRGIALDTEEQTATLTATAVAEIAVGVVRWLQDKKQLPRKAQQRLTIA IGHDSRLTAEPIKQALVDTFLSLGIQVIDVGLATTPAMFMATQFPTLQCDAAIMITASHL PYYFNGLKFFTAEGGAEKEDIRYILSHTDPLTANENGTLMKQELLPIYAEHLVAKIRQGI HSPEEKPLHGFRIIVDAGNGAGGFFAEQVLQVLGADTTGSQFLEPDGHFPNHVPNPDNSE AMKSIQTAVLANQADLGIIFDTDVDRSAVVDQSGEVLNRNNLIAVLAAIVLKEAPGSYIV TNSPTSSHLKTFIEEKGGQQIRYISGYRNVINKMIELNHGGFQTPLAIETSGHAAFQENY NLDDGAYVVAKILMLLPELKQNNQTLGDLIATLKQPAETNEFRFKITAEDVTCYGQQVLR DFELFVESQADFAVDHENQEGVRGNVSGQYGSGWFLLRLSLHEPLLVLQVENDQSDKNAC VIEKIATFLQKYEEIDSQQIEK >gi|307679215|gb|GL457032.1| GENE 50 48320 - 48874 462 184 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116334854|ref|YP_796381.1| acetyltransferase [Lactobacillus brevis ATCC 367] # 1 176 1 176 177 182 50 4e-45 MENVLKGKHIGFSHFREEYIEHIAKQQWDNELLRHLSWDALHPWGLEEWKDFTINKGEDD RFLFAILENTTEKFIGWVSLSDVQLKNRGANLGIAILQKEQRGQGYGFEAVSLICKFAFY ELGLHKIRLAVNSNNQKAIHGYEKVGFKKEGIDREALFQDGQWLDIYNYGILQKEWLQMI KAES >gi|307679215|gb|GL457032.1| GENE 51 48998 - 49861 537 287 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 3 280 5 276 285 211 44 8e-54 MEYSMRLPENFSTMTVKELLENEWLVPRKVRHFLRTRKNVKINGETAAFHFPVQAGDCVT LTFEETDYVRPTIHLGEATHVKVLYEDEHLMIVNKPYGIKTHPNQPQETNTLLNHVAAYL AEKNQVPYVVHRLDKETSGAIVFAKNPFVLPILGRLLETKQIYRQYQAIVAGHFNQKEQT INQPIGRDRHDRRKRRIDPQKGNSAITHVQVVQVLSNNQTAVTCVLETGRTHQIRVHLAS EGHPIIGDPLYNPKSQAARLMLHASQLHLLHPFTKKQIVVTAAPGLW >gi|307679215|gb|GL457032.1| GENE 52 50204 - 52390 2374 728 aa, chain + ## HITS:1 COG:SPy2059 KEGG:ns NR:ns ## COG: SPy2059 COG0744 # Protein_GI_number: 15675827 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Streptococcus pyogenes M1 GAS # 34 722 93 777 778 614 49.0 1e-175 MDNLKQFFSKVGVGLRHFWTWIKPYLIQFHQARKRIWKKYQINKIFLLIGLVVALGASIY LFYLAKSANVETLKSGLSESTRVYDESGEEVGKLFGQKGTFVELDNISPYIQDAVISTED RGFYQHKGYSIKGIARAVVGKLTFGKIGGGGGGSTITQQLAKNAYLTQEQTLDRKARELF LAIEIEKKYSKKDILAMYLNNSYFGNGVWGVQDAARKYFGVDASQVTVGEAATLAGMLKG PGIYNPIDYIDNATARRNTVLQLMVDNKKLSQEEANQEASVNLASLLNDTYVGDENSYKY PYYFDAVIDEAVNRYKFKEEDILNKGYKIYTSLNQKYQDAMDATYKNDALFPPNAEDGAM VQSGSVAIDPKTGGVQALVGGRGEHVYRGFNFATQTKRSPGSSLKPISVYTPALEAGYKP DSVLEDKPQDYYPAQNYSRTYSGEVPMYQALGESLNLPAVWLLHQIGLDKGYEKTEKFGI PLSEKDRYYGLALGGLQTGVSPLTMAGAYSAFANEGYKTETHLITKIVDSTGAIVVDNTK VKKEQVITKDVADGITSMLLGVFSSGSGVNAQPAGYVMAGKKGTTETNFDSSKTNDQWVI GYTPEVVIATWLGFQETSKTHYLEGSSATYASQVFNSQASGILPQVKQAQFPVADAYATG GKVVDSNDSLTGGANSNWRDNLKDFGNSVQDGASNFGDTLNEVGGQIKDGAKKVKDKIEG IFGGLLGN >gi|307679215|gb|GL457032.1| GENE 53 52453 - 52794 566 113 aa, chain + ## HITS:1 COG:lin2326 KEGG:ns NR:ns ## COG: lin2326 COG3679 # Protein_GI_number: 16801390 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 3 112 4 113 117 87 50.0 5e-18 MSNIYDTANQIERELRELDEFKALQAAYEEVKADEAAYTLFKEFQGFQQGLQEKQMRGEE FTDEDAEKAQSIATKVQETAVINELMQKEQAFSLVVNDLNRIIMTPVRDMYND >gi|307679215|gb|GL457032.1| GENE 54 52950 - 54185 1300 411 aa, chain + ## HITS:1 COG:lin2325 KEGG:ns NR:ns ## COG: lin2325 COG0420 # Protein_GI_number: 16801389 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Listeria innocua # 1 259 4 262 411 178 37.0 2e-44 MKLLHTADLHMDRSFEGLTGIPTALAKRLREANQQLLMNIVTVAIRETVDLVIFAGDTFH QSQTSISMQAQLMAALEQLKQAEIPVILTFGNHDYYKKDRYWFSFPDNVFLFEKEMVETL YFETKAGEQVAVSGFSYEHPWIDENKALEFPIKQADSDIHIGIYHGDTSRKAQQNYAPFT WKDLKATGYNYWALGHIHQPQIVSEQPLIVYPGTPQGHTKKEQSLQGVAVVTLSQNQATV QFEKVAEIDWTNEEVSLAQCRDTQSILSYLETSLLTKWHAHQQQQLMALTLKETQHLDVT VVQAIVNGELLSYLQQQLLQKTQGDFFVYRLILQAEEPTKEPIYLAASPNLLTALEKTYL DPVIFEDTTKELLRYPEFAGIFSMDEQWRLESLRLAHEQINEDFTIQEDPL >gi|307679215|gb|GL457032.1| GENE 55 54182 - 56893 2871 903 aa, chain + ## HITS:1 COG:lin2324 KEGG:ns NR:ns ## COG: lin2324 COG4717 # Protein_GI_number: 16801388 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 895 1 908 908 217 25.0 7e-56 MKLLAVEIVGFGKWQQQKITFESGNQLLYGANEVGKSTLYQFIQAMLFGFPTKGKRKRDY APKNGGSYGGRLWLAHPVFGEVQVERFKEKNKGQAIIYYQQQMGDEKTLQQMLHPLTKKL FQEVFTFQQEQLITSDKLTEEELQTSLLAIGVSGSQQLLIYRNAYFKEAQKIFKGKGQQP LLNQKLAAYQELKEQIQEKEAQQQTFQQLEETIRETEQRRVTLQQQLKGTQQGLLQVAEQ QRHFPLYEEWQSLPEETENVVFVKEDQVQLEETFQEYMYLDKERQRLTKELSLQSEALDV PEGYAFYLEQEALIQQLLNQRYDMQQLMTESEWMTQTFEQNRQEMVLLENEWSWSPERPP QLFYDNETVQKWRQQQVAYTQALQKGQEQKAFLASQIENLEDQLTDFEKAHAAFFGEATR AQKAQKTSQPLWLLLGSILALLGFFLPSPLKWGLVLVGVSFIAKEVLSYATRKEASSDEV KEEWQTKLSQLDYLNEQFQQALNQEREAQLQVEQLEQAVAEQAQVHQLGKMNQIDTLMNQ RELITRYLLLVQTNEELMSQLKENQQKRQVFEEQVVPLMTHLPLQGKSLSEKLHFLEGFA EEMEKVRFSQEYQADGYLKQQLRELKTKQQEALTRIQPLLIRYRILSIADVPSRIQQLTT QQAQVGRGQELATQLGNLFPEAVTEATLKDRSLQLAQQQALEESQLNKIQEQYQALIYEK QQLMTDGTLDELYQRQAILKAEIKELAQRWSGYQLAGQLLMDLLTELSEQQLPSLLQYAS SYFALLTNQRYQSIQVAEGQLVAVTKEQEMFYLHELSTGTKDQLMMAVRFAFLAVQGEQL ICPIIIDDGWLHYDHQRKAQLAELFTKFGQKQQVICFSSDQEMVSYYQDLQQRVIALEGG SVK >gi|307679215|gb|GL457032.1| GENE 56 56890 - 57834 1057 314 aa, chain + ## HITS:1 COG:SP1980 KEGG:ns NR:ns ## COG: SP1980 COG3481 # Protein_GI_number: 15901803 # Func_class: R General function prediction only # Function: Predicted HD-superfamily hydrolase # Organism: Streptococcus pneumoniae TIGR4 # 10 311 4 305 308 367 58.0 1e-101 MKKLRELTVEELFESFVLIKNADVRVAKNGKKFIAFTFQDTSGTIDGKYWDASEDEITRF TAGNVVLLNGKREVYQNKPQVKILHMRLATAEEPSQPSLYMERAPLKKEEMVEEINQVIF EITNAYWNRIVRYLMTKYQQEFYEFPAAKRNHHAFANGLAYHTVSMLRLGKAIAKEYPEI NTSLLYAGIILHDLGKVLELSGAITTEYTVAGNLIGHLVLVDEEITKACLALKIDDREED VVVLRHMVLAHHGLLEYGSPVRPRIMEAEILHQIDTMDASIQMMLGAIRQTQPGEYTERI FGLDNRSFYVPKDK >gi|307679215|gb|GL457032.1| GENE 57 57874 - 58902 1415 342 aa, chain - ## HITS:1 COG:SP0981 KEGG:ns NR:ns ## COG: SP0981 COG0760 # Protein_GI_number: 15900858 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Streptococcus pneumoniae TIGR4 # 1 297 1 299 313 167 41.0 4e-41 MKKKLILAAAGAMAVFSLAACSSGSKDIATMKGSTITVDDFYNQIKEQSTSQQAFSQMVI YKVFEEKYGDKVTDKDIQKNFDEAKEQVEAQGGKFSDALKQAGLTEKTFKKQLKQRAAYD AGLKAHLKITDEDLKTAWASFHPEVEAQIIQVASEDDAKAVKKEITDGGDFTKIAKEKST DAATKKDGGKIKFDSQATTVPAEVKEAAFKLKDGEVSEPIAATNMQTYQTTYYVVKMTKN KAKGNDMKPYEKEIKKIAEETKLADQTFVSKVISDELKAANVKIKDDAFKNALAGYMQTE SSSASSEKKESKSSDSKTSDTKTSDSEKATDSSSKTTESSSK >gi|307679215|gb|GL457032.1| GENE 58 59066 - 59410 304 114 aa, chain - ## HITS:1 COG:no KEGG:EF0686 NR:ns ## KEGG: EF0686 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 114 1 114 114 200 100.0 2e-50 MKKFIKGLFFGAAAGTIGGLLAAPRSGKETRQHLINELEDYRSLKNQVTNDWDQVQRNLA VVEENVPLATEFSKDLQQEITDFKFQAEPRIAQIKEQIAKITAELPDTQTNKQK >gi|307679215|gb|GL457032.1| GENE 59 59411 - 59836 519 141 aa, chain - ## HITS:1 COG:lin2319 KEGG:ns NR:ns ## COG: lin2319 COG0537 # Protein_GI_number: 16801383 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Listeria innocua # 1 141 1 140 140 181 60.0 3e-46 MNDCIFCKIINGEIPSYKVYEDEKVYAFLDITQVTKGHTLMIPKQHVADIFEYNDVLASD VFARIPKVARALEKAFPEMEGLNILNNNKEVAYQSVFHSHVHLIPRYSKEDDFSIHFGNH QEDYSAEAMQEIAETIAKQVN >gi|307679215|gb|GL457032.1| GENE 60 60052 - 60789 262 245 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 2 232 8 239 309 105 30 6e-22 MSLTIEHLTGGYGHIPVLKDINFDVKSGEMVGLIGLNGAGKSTTIKNIIGLLTPQKGKIM IDGETLQQAPEEYRKKIGYIPETPSLYEELTLKEHIEVTALAYDIPLEEAFKRAEPLLKT FRLDNKLEWFPANFSKGMKQKVMVLCAFLIEPSLYIIDEPFLGLDPLAIHALLELMDTMR KQGAAILMSTHILATAEKYCDRFVVLHEGKLRANGTMAELRAEFNLPESSLDDIYLALTK EEKVG >gi|307679215|gb|GL457032.1| GENE 61 60791 - 62002 1087 403 aa, chain + ## HITS:1 COG:lin2317 KEGG:ns NR:ns ## COG: lin2317 COG4473 # Protein_GI_number: 16801381 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted ABC-type exoprotein transport system, permease component # Organism: Listeria innocua # 4 403 10 405 407 191 33.0 3e-48 MGEIFSQRLSRHFKKMSKYLRYILNDHFVLVCMFLLGGLGLYYSQLLKELPRDFVWGRPL ILLGWLLLIQVGKLATLTEEPDKVFLLPKEKQFAAYLKRALRYSLLLPIVVSFLGSGLLM PLIVVTTGWSFQTFFLFLVMLVCMIYTHLSLQSYGLYHLSSTTYRSWWFVWLISSLLIMT GAIYWTPWVGVIGGIILAVCLSSIWQNKMKKSFLDWEKMIQKEQNRMHRIYKFIQLFTDI PEVSSTVKRRKYLDPLLGVVKKTSENTYAYLFIRSFLRGSEYSGLLFRLILVGGVLLFFL QEFWIALVVALLFVYLIGFQLIPMYTQFDYMVMTQLYPISIEKKQAAIRRLISGALSVAA IIFGGIVCLRLGSLQNSLIILGALIVEVVIFTKMYVPMRLNKL >gi|307679215|gb|GL457032.1| GENE 62 62131 - 62910 796 259 aa, chain + ## HITS:1 COG:L155396 KEGG:ns NR:ns ## COG: L155396 COG0510 # Protein_GI_number: 15672730 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted choline kinase involved in LPS biosynthesis # Organism: Lactococcus lactis # 5 255 2 252 257 201 37.0 2e-51 MEFQLDKDWRLQPIKGATGQTYMGIKETEKVFIKRNTSPLLAALSKEGLAPKMIWTKRTA NGDVLTAQEWLEGRLLHADEIGKRNDVIDVLYQLHHSNLLKDMLKKIGGEVCTPLTMLKE YKRQLPKELKRNSYLKEVITYLYNHLPEYPETSYVAVHGDVNHRNWLVSNNYLYLVDWDS VMVADPAVDLGMILSHYVPRSGWNQWLLSYGLIPNESTVQRIYWYGLFSFLQEIVRHHQE GERRAMTAEILQLKRMFSS >gi|307679215|gb|GL457032.1| GENE 63 62983 - 63627 1002 214 aa, chain + ## HITS:1 COG:SPy1726 KEGG:ns NR:ns ## COG: SPy1726 COG0220 # Protein_GI_number: 15675576 # Func_class: R General function prediction only # Function: Predicted S-adenosylmethionine-dependent methyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 211 1 211 211 296 66.0 2e-80 MRVRNRPGAAEYMAKYPQYVVEGPEKWQGKWQERFGNNHPIHIEIGSGKGRFIYEMAKAH PEINYIGIDMQLSILSIALDKLVAEPLPNLQLLRVDGEALTEYFAENEVDLIYLNFSDPW PKKKHEKRRLTYKNFLATDEIILKPNGEIHFKTDNQGLFEYSLSSFSKYGMIIERVWLDL HNSEFEGNIMTEYEEKFSSRGQRIYRVEARFVAK Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:56:34 2011 Seq name: gi|307679214|gb|GL457033.1| Enterococcus faecalis TX2141 genomic scaffold Scfld115, whole genome shotgun sequence Length of sequence - 90430 bp Number of predicted genes - 89, with homology - 86 Number of transcription units - 42, operones - 21 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 20 - 75 13.1 1 1 Op 1 . - CDS 76 - 924 914 ## COG1307 Uncharacterized protein conserved in bacteria 2 1 Op 2 1/0.182 - CDS 1000 - 2172 1032 ## COG1316 Transcriptional regulator - Prom 2206 - 2265 5.8 - Term 2250 - 2303 11.4 3 2 Op 1 2/0.182 - CDS 2316 - 3164 830 ## COG0077 Prephenate dehydratase 4 2 Op 2 5/0.000 - CDS 3172 - 3678 618 ## COG0703 Shikimate kinase 5 2 Op 3 6/0.000 - CDS 3698 - 4978 1462 ## COG0128 5-enolpyruvylshikimate-3-phosphate synthase 6 2 Op 4 1/0.182 - CDS 4991 - 6085 943 ## COG0287 Prephenate dehydrogenase 7 2 Op 5 7/0.000 - CDS 6119 - 7285 1547 ## COG0082 Chorismate synthase 8 2 Op 6 3/0.182 - CDS 7287 - 8363 1293 ## COG0337 3-dehydroquinate synthetase 9 2 Op 7 . - CDS 8386 - 9411 1265 ## COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase 10 2 Op 8 . - CDS 9448 - 10314 784 ## COG0169 Shikimate 5-dehydrogenase - Prom 10350 - 10409 2.5 - Term 10749 - 10794 11.3 11 3 Op 1 . - CDS 10803 - 11258 612 ## EF1560 hypothetical protein - Prom 11286 - 11345 3.9 12 3 Op 2 . - CDS 11348 - 11722 536 ## COG5496 Predicted thioesterase 13 3 Op 3 1/0.182 - CDS 11722 - 12996 1234 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase 14 3 Op 4 3/0.182 - CDS 12939 - 13718 910 ## COG0289 Dihydrodipicolinate reductase 15 3 Op 5 . - CDS 13711 - 14061 425 ## COG1694 Predicted pyrophosphatase - Prom 14150 - 14209 8.6 + Prom 14106 - 14165 2.1 16 4 Tu 1 . + CDS 14185 - 15069 849 ## COG1284 Uncharacterized conserved protein + Term 15071 - 15117 12.3 - Term 15059 - 15105 12.3 17 5 Op 1 4/0.091 - CDS 15107 - 15646 645 ## COG5582 Uncharacterized conserved protein 18 5 Op 2 . - CDS 15656 - 16912 1714 ## COG0457 FOG: TPR repeat 19 5 Op 3 . - CDS 16922 - 17962 917 ## EF1552 hypothetical protein - Prom 18171 - 18230 6.5 - Term 18221 - 18256 7.1 20 6 Tu 1 . - CDS 18269 - 18544 179 ## PROTEIN SUPPORTED gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 - Prom 18697 - 18756 6.6 - Term 18616 - 18657 -0.1 21 7 Tu 1 . - CDS 18792 - 20102 1840 ## COG1160 Predicted GTPases - Prom 20129 - 20188 4.3 - Term 20199 - 20253 16.2 22 8 Op 1 21/0.000 - CDS 20276 - 21487 2024 ## PROTEIN SUPPORTED gi|238857123|ref|ZP_04647375.1| 30S ribosomal protein S1 homolog - Prom 21536 - 21595 7.8 23 8 Op 2 . - CDS 21601 - 22281 809 ## COG0283 Cytidylate kinase - Prom 22325 - 22384 4.6 - Term 22388 - 22441 10.5 24 9 Op 1 . - CDS 22518 - 23144 718 ## EF1546 LysM domain-containing protein 25 9 Op 2 4/0.091 - CDS 23220 - 24656 1493 ## COG0514 Superfamily II DNA helicase 26 9 Op 3 . - CDS 24663 - 25697 657 ## COG4955 Uncharacterized protein conserved in bacteria - Prom 25890 - 25949 5.4 + Prom 25630 - 25689 6.8 27 10 Tu 1 . + CDS 25733 - 25951 246 ## COG1141 Ferredoxin + Term 26055 - 26094 -0.1 - Term 25923 - 25973 17.3 28 11 Op 1 . - CDS 25974 - 27380 1436 ## COG4640 Predicted membrane protein - Prom 27406 - 27465 6.3 - Term 27500 - 27556 11.3 29 11 Op 2 . - CDS 27561 - 28226 615 ## COG3601 Predicted membrane protein - Prom 28437 - 28496 5.1 - Term 28513 - 28556 7.1 30 12 Op 1 12/0.000 - CDS 28569 - 29285 1049 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 31 12 Op 2 21/0.000 - CDS 29289 - 29894 790 ## COG1386 Predicted transcriptional regulator containing the HTH domain 32 12 Op 3 . - CDS 29891 - 30676 974 ## COG1354 Uncharacterized conserved protein 33 12 Op 4 . - CDS 30750 - 31640 824 ## COG4974 Site-specific recombinase XerD - Prom 31668 - 31727 6.1 - Term 31720 - 31777 16.6 34 13 Op 1 . - CDS 31809 - 32738 1250 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 32765 - 32824 8.9 - Term 32855 - 32904 10.2 35 13 Op 2 . - CDS 32933 - 34024 1299 ## COG3589 Uncharacterized conserved protein - Prom 34044 - 34103 8.3 + Prom 34006 - 34065 7.1 36 14 Tu 1 . + CDS 34206 - 34955 776 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family + Term 34956 - 35012 15.2 - Term 34943 - 34998 17.1 37 15 Op 1 . - CDS 34999 - 35373 513 ## COG5294 Uncharacterized protein conserved in bacteria - Prom 35410 - 35469 4.7 38 15 Op 2 . - CDS 35516 - 36055 630 ## EF1531 TetR family transcriptional regulator - Prom 36131 - 36190 10.2 - Term 36211 - 36265 17.0 39 16 Op 1 . - CDS 36280 - 37578 1642 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 40 16 Op 2 . - CDS 37605 - 37907 303 ## EF1528 hypothetical protein - Prom 37943 - 38002 11.3 - Term 37998 - 38042 7.1 41 17 Tu 1 . - CDS 38046 - 39362 2064 ## COG0536 Predicted GTPase - Prom 39427 - 39486 4.5 + Prom 39522 - 39581 5.7 42 18 Tu 1 . + CDS 39650 - 40660 1173 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase + Term 40678 - 40718 3.1 - Term 40666 - 40705 7.1 43 19 Tu 1 . - CDS 40711 - 41160 547 ## COG0735 Fe2+/Zn2+ uptake regulation proteins - Prom 41181 - 41240 10.2 44 20 Tu 1 . - CDS 41276 - 42157 525 ## PROTEIN SUPPORTED gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains - Term 42169 - 42217 11.0 45 21 Tu 1 . - CDS 42231 - 44309 2510 ## EF1523 hypothetical protein - Prom 44341 - 44400 4.5 - Term 44405 - 44448 11.5 46 22 Op 1 31/0.000 - CDS 44461 - 45567 1576 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) - Prom 45596 - 45655 2.9 - Term 45623 - 45671 4.1 47 22 Op 2 . - CDS 45676 - 47562 1888 ## COG0358 DNA primase (bacterial type) - Prom 47664 - 47723 4.0 - Term 47714 - 47776 14.2 48 23 Tu 1 . - CDS 47879 - 50215 2438 ## COG0474 Cation transport ATPase - Prom 50254 - 50313 5.0 - Term 50274 - 50341 17.4 49 24 Tu 1 . - CDS 50344 - 50928 763 ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) - Prom 51025 - 51084 6.2 - Term 51157 - 51204 5.2 50 25 Tu 1 1/0.182 - CDS 51252 - 51941 493 ## COG0036 Pentose-5-phosphate-3-epimerase 51 26 Op 1 7/0.000 - CDS 52079 - 53179 1448 ## COG1299 Phosphotransferase system, fructose-specific IIC component - Prom 53221 - 53280 5.0 - Term 53221 - 53269 0.1 52 26 Op 2 8/0.000 - CDS 53289 - 53738 445 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 53 26 Op 3 . - CDS 53758 - 54075 504 ## COG1445 Phosphotransferase system fructose-specific component IIB 54 26 Op 4 . - CDS 54075 - 54527 555 ## CAR_c23180 hypothetical protein 55 26 Op 5 7/0.000 - CDS 54517 - 55998 930 ## COG3711 Transcriptional antiterminator - Prom 56096 - 56155 6.1 - Term 56189 - 56235 10.2 56 27 Op 1 7/0.000 - CDS 56239 - 58236 2607 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 57 27 Op 2 . - CDS 58273 - 59106 908 ## COG3711 Transcriptional antiterminator - Prom 59279 - 59338 10.5 - Term 59370 - 59401 1.1 58 28 Op 1 . - CDS 59416 - 61068 1617 ## COG4166 ABC-type oligopeptide transport system, periplasmic component 59 28 Op 2 1/0.182 - CDS 61086 - 62462 1064 ## COG1305 Transglutaminase-like enzymes, putative cysteine proteases 60 28 Op 3 . - CDS 62479 - 63444 1150 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 61 28 Op 4 . - CDS 63452 - 63544 63 ## - Prom 63692 - 63751 5.8 + Prom 63632 - 63691 9.8 62 29 Tu 1 . + CDS 63820 - 64164 594 ## COG2151 Predicted metal-sulfur cluster biosynthetic enzyme + Term 64181 - 64247 15.1 - Term 64178 - 64225 9.1 63 30 Op 1 . - CDS 64262 - 64801 547 ## EF1509 hypothetical protein - Prom 64920 - 64979 5.6 64 30 Op 2 . - CDS 65014 - 65868 436 ## EF1508 hypothetical protein - Prom 65908 - 65967 5.5 + Prom 65840 - 65899 5.8 65 31 Op 1 . + CDS 66005 - 66115 71 ## 66 31 Op 2 . + CDS 66154 - 66687 320 ## EF1506 hypothetical protein - Term 66661 - 66698 1.5 67 32 Tu 1 . - CDS 66703 - 67695 954 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 67780 - 67839 6.1 - Term 67791 - 67830 3.1 68 33 Tu 1 . - CDS 67841 - 69133 1539 ## COG0019 Diaminopimelate decarboxylase - Prom 69160 - 69219 3.5 + Prom 69236 - 69295 6.3 69 34 Op 1 . + CDS 69349 - 71229 1574 ## COG3855 Uncharacterized protein conserved in bacteria 70 34 Op 2 . + CDS 71324 - 72271 963 ## COG2367 Beta-lactamase class A - Term 72274 - 72324 2.3 71 35 Op 1 . - CDS 72382 - 73479 991 ## gi|300860280|ref|ZP_07106367.1| conserved hypothetical protein 72 35 Op 2 . - CDS 73480 - 73989 351 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - Prom 74010 - 74069 10.4 - Term 74053 - 74103 12.4 73 36 Op 1 . - CDS 74128 - 74517 497 ## EF1501 hypothetical protein - Term 74531 - 74578 3.2 74 36 Op 2 16/0.000 - CDS 74592 - 75227 786 ## COG1394 Archaeal/vacuolar-type H+-ATPase subunit D 75 36 Op 3 16/0.000 - CDS 75232 - 76608 1792 ## COG1156 Archaeal/vacuolar-type H+-ATPase subunit B 76 36 Op 4 12/0.000 - CDS 76601 - 78382 2135 ## COG1155 Archaeal/vacuolar-type H+-ATPase subunit A 77 36 Op 5 13/0.000 - CDS 78400 - 78711 416 ## COG1436 Archaeal/vacuolar-type H+-ATPase subunit F 78 36 Op 6 . - CDS 78701 - 79702 1075 ## COG1527 Archaeal/vacuolar-type H+-ATPase subunit C 79 36 Op 7 . - CDS 79719 - 80300 890 ## EF1495 V-type ATPase, subunit E 80 36 Op 8 16/0.000 - CDS 80317 - 80790 811 ## COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K 81 36 Op 9 . - CDS 80818 - 82797 2048 ## COG1269 Archaeal/vacuolar-type H+-ATPase subunit I 82 36 Op 10 . - CDS 82787 - 83110 546 ## EF1492 V-type ATPase, subunit F - Prom 83359 - 83418 8.9 + Prom 83319 - 83378 10.9 83 37 Op 1 . + CDS 83483 - 83926 616 ## COG1780 Protein involved in ribonucleotide reduction 84 37 Op 2 . + CDS 83985 - 84164 224 ## EF1490 hypothetical protein + Term 84310 - 84343 0.2 - Term 84154 - 84210 9.6 85 38 Tu 1 . - CDS 84219 - 85568 2003 ## COG0166 Glucose-6-phosphate isomerase - Prom 85658 - 85717 7.4 - Term 85698 - 85749 9.2 86 39 Tu 1 . - CDS 85750 - 87096 1559 ## COG0334 Glutamate dehydrogenase/leucine dehydrogenase - Prom 87119 - 87178 5.4 + Prom 87118 - 87177 4.5 87 40 Tu 1 . + CDS 87234 - 88520 1213 ## COG2081 Predicted flavoproteins + Term 88522 - 88562 10.1 - Term 88504 - 88554 13.4 88 41 Tu 1 . - CDS 88561 - 90057 1214 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 90197 - 90256 6.4 + Prom 90222 - 90281 4.0 89 42 Tu 1 . + CDS 90345 - 90422 212 ## Predicted protein(s) >gi|307679214|gb|GL457033.1| GENE 1 76 - 924 914 282 aa, chain - ## HITS:1 COG:lin2658 KEGG:ns NR:ns ## COG: lin2658 COG1307 # Protein_GI_number: 16801719 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 2 280 4 281 283 239 45.0 5e-63 MKIAIVTDSTAYLPERIKDHPNLFVIPIPVILDGKIYNEGIDIEADEYYALLNNSKEFPT TSQPALGEVLELYKSIAEQGYDTIISIHLSSGISGFVHTLHGLTDEIPGVALYPYDSKIT SMPMGHMVEAALDLTEEKASLEEIFAKLDLIRDNTYAYLIVEDLNNLVRGGRLTNGAALI AGLLKIKPILTFEDGKIVLFEKIRSTKKAFARAEKIIGERNAGIEAPVKLYVIHANNRIV AEKEQAKLQKLYPNAEIEIGHFGPVIGTHLGEKAIGLAISAQ >gi|307679214|gb|GL457033.1| GENE 2 1000 - 2172 1032 390 aa, chain - ## HITS:1 COG:lin0463 KEGG:ns NR:ns ## COG: lin0463 COG1316 # Protein_GI_number: 16799539 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 88 388 6 308 309 258 44.0 1e-68 MSRVDRYKHIHEKSRPAEHKKTFNPRKSMGEHREEEPEELAESLQEPVYEDSYTEDSRRS ERRHQTDSGGGNGSDQPPRGKKDKKPKKKRKKSKTKRFFKWLVILLILLFAYSTVMFLKG KSAAEHDDSLPQEKVETFNGVKSSNGAKNILILGSDTRGEDAGRADTIMVLQLNGPSKKP KLISFMRDTFVDIPGVGPNKINAAYAYGGAELVRETLKQNFNLDTKYYAKVDFQSFEKIV DSMFPKGVKIDAEKSLNLDGVDIEKGQQVMDGHVLLQYARFRMDEEGDFGRVRRQQQVMS AVMSQMKNPMTLLRTPESLGKLVGYMSTDVPVSFMLTNGPSLLIKGKAGVESLSVPAPDS WNFGESSYAGSILEVDEQKNADAIEKFLNE >gi|307679214|gb|GL457033.1| GENE 3 2316 - 3164 830 282 aa, chain - ## HITS:1 COG:SP1369 KEGG:ns NR:ns ## COG: SP1369 COG0077 # Protein_GI_number: 15901223 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydratase # Organism: Streptococcus pneumoniae TIGR4 # 1 280 1 275 282 276 51.0 2e-74 MKVGYLGPIGSFTYSATLAAFPDATLIPYASIPACLKAIEQQEVACSIIPIENTIEGTVN ASIDYLYHQAQLPVQAELVLPIQQQLMVAKENQSIWQQSQKILSHPQALAQSQMFLEKNF PEAILEATPSTAYAAKYIAEHPELPFAAIAPKLSAEMYDLTIVEKNIQDLSVNQTRFWVL GSENLAISFPLSEKKITLAITMPSNVPGSLHKALSVFSWRGINLSKIESRPLKTKLGEYF FLMDLVNDQPEKLIEAALTELELIGAEIKILGDYPIYVLSTL >gi|307679214|gb|GL457033.1| GENE 4 3172 - 3678 618 168 aa, chain - ## HITS:1 COG:SP1370 KEGG:ns NR:ns ## COG: SP1370 COG0703 # Protein_GI_number: 15901224 # Func_class: E Amino acid transport and metabolism # Function: Shikimate kinase # Organism: Streptococcus pneumoniae TIGR4 # 5 162 4 157 158 130 44.0 1e-30 MESIVLIGFMGAGKTTIGQSLANKLKMSHLDLDTALIEKIGRSIPDYFEKYGEAAFREQE TQLLKELSKNTAVLSTGGGIVVGPENRSLLKSFQQVIYLHATPEELLKRIKEDTENQRPL AIERSSKEIIALFESRKNFYEECAKMTIDTTNRLPEEIINEILQQLKE >gi|307679214|gb|GL457033.1| GENE 5 3698 - 4978 1462 426 aa, chain - ## HITS:1 COG:SP1371 KEGG:ns NR:ns ## COG: SP1371 COG0128 # Protein_GI_number: 15901225 # Func_class: E Amino acid transport and metabolism # Function: 5-enolpyruvylshikimate-3-phosphate synthase # Organism: Streptococcus pneumoniae TIGR4 # 1 424 1 424 427 526 62.0 1e-149 MQLRTNVKHLQGTLMVPSDKSISHRSIMFGAISSGKTTITNFLRGEDCLSTLAAFRSLGV NIEDDGTTITVEGQGFAGLKKAKNTIDVGNSGTTIRLMLGILAGCPFETRLAGDASIAKR PMNRVMLPLNQMGAECQGVQQTEFPPISIRGTQNLQPIDYTMPVASAQVKSAILFAALQA KGTSVVVEKEKTRDHTEEMIRQFGGTLEVDGKKIMLTGPQQLTGQNVVVPGDISSAAFFL VAGLVVPDSEILLKNVGLNQTRTGILDVIKNMGGSVTILNEDEANHSGDLLVKTSQLTAT EIGGAIIPRLIDELPIIALLATQATGTTIIRDAEELKVKETNRIDAVAKELTILGADITP TDDGLIIHGPTSLHGGRVTSYGDHRIGMMLQIAALLVKEGTVELDKAEAVSVSYPAFFDD LERLSC >gi|307679214|gb|GL457033.1| GENE 6 4991 - 6085 943 364 aa, chain - ## HITS:1 COG:lin2038 KEGG:ns NR:ns ## COG: lin2038 COG0287 # Protein_GI_number: 16801104 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydrogenase # Organism: Listeria innocua # 1 362 1 365 367 376 52.0 1e-104 MKKRILIVGLGLIGSSLALCIKKGHPNSEIIGFDNQAEATEFAKKTGLIDEIAESLTSGA RRAEIIFLCSPVKATLVQLEELNQLSLETALITDVGSTKVEINQLATKLNMKNFIGGHPM AGSHKSGVTAADERLFENAYYIFTDDHGEKSKQIQELQTLLKGTHAKFITMPAQEHDEIT GALSHLPHIVAAALVNESQQLNTTYPRAQQLAAGGFRDITRIASSDATMWTDILLSNRLV LLDLLENWQKEMTTVCQWLTEKNAPAIRNFFDKARETRAQLPIHKEGAIPAFYDLFVDVP DQPGIIAEITQILGEADLSLTNIKILETREEIYGILQLSFKNQSDCQAAKQILSKKTNYT CYEK >gi|307679214|gb|GL457033.1| GENE 7 6119 - 7285 1547 388 aa, chain - ## HITS:1 COG:SPy0810 KEGG:ns NR:ns ## COG: SPy0810 COG0082 # Protein_GI_number: 15674852 # Func_class: E Amino acid transport and metabolism # Function: Chorismate synthase # Organism: Streptococcus pyogenes M1 GAS # 1 388 1 388 388 497 62.0 1e-140 MRFITAGESHGPELTAIIEGLPAGLPLSSEEINRELARRQGGYGRGGRMKIEKDQVRITS GIRHGKTLGSPVTLIVENKDWKNWTSVMSVEPVPEKQKKIRRVSKPRPGHADLVGGMKYQ HDDLRNVLERSSARETTMRVAIGAVAKKLLAELDIQVAGHVAVLGGIEATIPENLTIREI QERSEQSAVRVLDPSVEEKMKELIDQTKKNGDTIGGVVEVLVGGVPAGLGSYVQWDRKLD AKIAQAVVSINAFKGAEFGIGFEMAQRPGSQVMDEIVWDESTGYTRTSNNLGGFEGGMTN GMPIIVRGVMKPIPTLYKPLQSVNIDTKEPYKASVERSDSTAVPAASVVCEAVVATEVAK AMLEKFDSDSFEQMKEAVKRYRLYTQNF >gi|307679214|gb|GL457033.1| GENE 8 7287 - 8363 1293 358 aa, chain - ## HITS:1 COG:L0060 KEGG:ns NR:ns ## COG: L0060 COG0337 # Protein_GI_number: 15673738 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate synthetase # Organism: Lactococcus lactis # 1 354 1 356 356 401 56.0 1e-112 MKLTVTLPTHSYDLTIETGALDKIGTWVRSLWQPQRVAIITDETVNKLYGAAVEKELQAA GFETSLIAVAAGEQSKSLETAQLLYDFLAEQQLTRSDGLIALGGGVVGDLAGFVASTYMR GIHFLQVPTTLLAQVDSSIGGKTAVNTKKAKNLVGTFAQPDGVLIDPNTLKTLEPRRVRE GIAEIVKSAAIADVELWHRLSSLENEQDLVAHAEEIITACCKIKRDVVEEDELDLGLRLI LNFGHTIGHALENTAGYGVIAHGEGVSLGMIQITQVAEQRGLSPLGTTQELVTMLEKFDL PVTTDRWPEERLYQAITHDKKTRGGQIKIIVLEKIGQAKIVSLPTEEIRAFLNREGGI >gi|307679214|gb|GL457033.1| GENE 9 8386 - 9411 1265 341 aa, chain - ## HITS:1 COG:TM0343 KEGG:ns NR:ns ## COG: TM0343 COG2876 # Protein_GI_number: 15643111 # Func_class: E Amino acid transport and metabolism # Function: 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase # Organism: Thermotoga maritima # 1 333 1 333 338 344 51.0 1e-94 MIVIMKENATEKQMKQVIDLVTGAGLTTQTSQDNGKTVIGLIGDTEKLVEAELTALEGVE KSVRISLSYKLTSRLFHPENTVVDVNGVKIGDGSMTMMAGPCSIESLDQIRECARIAKAG GATILRGGAFKPRTSPYAFQGLEEEGLKYIRQAADELDMQVITEVMDEANLELVAKYSDI LQIGARNMQNFKLLQAVGKTGKPIGLKRGIAGTIDEWLNAAEYIAAQGNFNVIFIERGIR TYETATRNTLDLSAVPLIKKLSHFPIIVDPSHGVGIWDLVPPMARAGVASGADGLIVEIH PDPANAWSDGPQSLNEKTYLRMMKEVHIIEKAMKEINALED >gi|307679214|gb|GL457033.1| GENE 10 9448 - 10314 784 288 aa, chain - ## HITS:1 COG:lin0493 KEGG:ns NR:ns ## COG: lin0493 COG0169 # Protein_GI_number: 16799568 # Func_class: E Amino acid transport and metabolism # Function: Shikimate 5-dehydrogenase # Organism: Listeria innocua # 2 282 7 287 291 276 48.0 3e-74 MKEITGATRLAGLFAKPSQHSISPLIHNTAFQNLGVDARYLAFDVGQETLPQAIEAIRTF HMLGANLSMPNKVAAVSYMDELSPTAQLVGAINTIVNKDGKLYGDSTDGTGFMWSLKEKK VDVFQNKMTILGTGGAALSIIAQAALDGVKEIAVYNRKSAGFNDSQKKLANFTERTNCVI HLNDLADTEKLAKDVAESVLLVNATSVGMHPHAHSSPIENYAMIQPKLFVYDAIYNPRET QLLKEARLRGAETSNGLDMLLYQGAVAFEQWTGQKMPVSVVKRKIENR >gi|307679214|gb|GL457033.1| GENE 11 10803 - 11258 612 151 aa, chain - ## HITS:1 COG:no KEGG:EF1560 NR:ns ## KEGG: EF1560 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 151 1 151 151 300 99.0 1e-80 MAREMTGLKFYFRNGETWTIDRRFIGDLWIKHITTSFGRIHGSEFVEIHPCEGFKIEIFQ EGDHVQTHDINLGGLELGMFSRALKYEDIERMEILYKNGTPDLVYFPYKDKTDEGLDNIY QSTKVSEKTKNLYIVIDPTQTVNDVYAEELK >gi|307679214|gb|GL457033.1| GENE 12 11348 - 11722 536 124 aa, chain - ## HITS:1 COG:SPy1339 KEGG:ns NR:ns ## COG: SPy1339 COG5496 # Protein_GI_number: 15675277 # Func_class: R General function prediction only # Function: Predicted thioesterase # Organism: Streptococcus pyogenes M1 GAS # 5 123 3 121 121 70 30.0 9e-13 MPTEMFTKEFLVKESQTAKMLGSGDLEVLGTPALAAMIEQTAKEAVKDQLSVGETTVGTV LELRHLYPSAVGATIVVTMTSIEQTAHKIRYEFVAYEGERQIAKGSHQRAVVEIDSFLKR ITKD >gi|307679214|gb|GL457033.1| GENE 13 11722 - 12996 1234 424 aa, chain - ## HITS:1 COG:SP1554 KEGG:ns NR:ns ## COG: SP1554 COG0617 # Protein_GI_number: 15901397 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Streptococcus pneumoniae TIGR4 # 24 418 1 394 394 353 49.0 4e-97 MSASGTENRTTLRIGTDAMKLTTIPNEFKEAAPVIREINAQGFEAYFVGGSVRDALLNKP IHDVDIATSAYPEEIKQIFKRTVDVGIEHGTVLVLMEDQQYEVTTFRTESTYQDFRRPDE VTFVRSLKEDLKRRDFTINALALDSTGEIIDLFDGIEDLTNQTIRAVGNPHERFHEDALR MMRGLRFASQLDFKIEEKTLAAIAEFHPLLEKISVERITIEFVKMLLGVNRQGGLAPFIE TECYQYCPKLREQGAGLFRLMDLPARQIETEVEAWTLLIQSLNLPEAEIRSFLKAWKLSN QLIQNVSQLVRGLRFRLNNDWQPMMLYELGEESAVLVERLLYYYQQESQVQVTKELVKAL PIHQRHELAITGKDLLAVLEETPGKWLGELIAEIEQHVVEGSLENKQEVLLSFAKKQRSK GEKA >gi|307679214|gb|GL457033.1| GENE 14 12939 - 13718 910 259 aa, chain - ## HITS:1 COG:SP1555 KEGG:ns NR:ns ## COG: SP1555 COG0289 # Protein_GI_number: 15901398 # Func_class: E Amino acid transport and metabolism # Function: Dihydrodipicolinate reductase # Organism: Streptococcus pneumoniae TIGR4 # 2 259 3 255 255 327 63.0 2e-89 MIKIIVAGFKGRMGSTATQMVLETADFELVGVYDPHEAQETVSFNDETAIPVFQRLEEVL AVNPDVWIDFTVPEAAYPNTRFALEHGMAPVVGTTGFTEEQINELTNLSREKAIGGLIAP NFAIGAVLMMQFAQKAAQYFPDVEIIELHHDNKLDAPSGTAIKTAEMIQEVRPAKKQGNP QEVESIPGARGADFEGLRIHSVRLPGLVAHQQVQFGSVGEGLTIRHDSYDRRSFMTGVAL ACRQVVQRTELLYGLEQML >gi|307679214|gb|GL457033.1| GENE 15 13711 - 14061 425 116 aa, chain - ## HITS:1 COG:SA1292 KEGG:ns NR:ns ## COG: SA1292 COG1694 # Protein_GI_number: 15927040 # Func_class: R General function prediction only # Function: Predicted pyrophosphatase # Organism: Staphylococcus aureus N315 # 7 110 2 105 105 121 65.0 3e-28 MSESEQRSLQSMQTEVDDYIQQFKTGYFSPLGQMARLTEEVGELAREVNHYYGEKQKKAD EKPKTVSEELGDVFFVLISMANSLEIDLTEVFEENMAKFNKRDRYRFERKDGKTHD >gi|307679214|gb|GL457033.1| GENE 16 14185 - 15069 849 294 aa, chain + ## HITS:1 COG:SPy2153 KEGG:ns NR:ns ## COG: SPy2153 COG1284 # Protein_GI_number: 15675895 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pyogenes M1 GAS # 14 279 16 281 290 282 52.0 4e-76 MEEQRFYFKDVLFIVLGSCIYAFGLVTFNIANDLAEGGVTGITLILRALFHFNPAYTTLL INIPLLLIGGKILGKRSLYYTLIGTVSLSVFLWFWQKFPVEINLDHDLLIAALLAGLAAG FGSGLVYRVGGTTGGTDVIARIFEKYFGISMGRSLLLFDVAVLLLSLTYIDVKRMMYTLI VSFVFSRVVDSVLDGAYAAKGILIVSNHSEEIGQSLMASLERGVTYLNGEGAYSQVEKRV LYTVVSPREIMEVKRIANEIDEKAFVSIINVHEAIGEGFTYAKPSKQRRFKLKQ >gi|307679214|gb|GL457033.1| GENE 17 15107 - 15646 645 179 aa, chain - ## HITS:1 COG:lin2035 KEGG:ns NR:ns ## COG: lin2035 COG5582 # Protein_GI_number: 16801101 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 3 179 5 179 181 118 38.0 6e-27 MFVSLSEKKKFLTWLVNTVPFGRREVLWILNYLLTHDAILNNVHFVENVEKTDRGIRVVA DGLGKEPLLLFIQAQEFTDPEQIFHEIRMNWRKALYLECVFPEAWQTSQYLSVLEDNPFA PWNEQVDQEVARAIDQYFKQEEQTQRMALLKAQINDALETGNKEAFLELSDELNRLKQQ >gi|307679214|gb|GL457033.1| GENE 18 15656 - 16912 1714 418 aa, chain - ## HITS:1 COG:SPy1012 KEGG:ns NR:ns ## COG: SPy1012 COG0457 # Protein_GI_number: 15675015 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Streptococcus pyogenes M1 GAS # 1 412 1 406 415 239 40.0 5e-63 MSYSEKMVQALQAENLAEAQLMFEEALKKDDENTLADLGETLLSLGFLEEAKQIFQQLLE QFPDADGLNIPLAEIAIENNEIDDAFIYLEKIPETSDSYIQSLLVTADLYQVLGISEVSE AKLKEAANLMPEEPLIQFALGELYFTNGQFVEAITRYQSIVESGTAQISAISLNERLGSS YSMLGDFEEAVPYLEAAVKEEQTDDRLFQLAFTYLQLHENQKAIALFQQLKTLNPHYQSL YLYLAEALQEEEQLEEAKAVIEEGIAENPFQVELYQFASENAYRLHDIAGAENWLLKALE LGEKTDESRLTLSNLYLTEERFEEVITILNDLEETDHPYAEWNLAKAYNELEDFAVAKVH YEQAAQELSHEPEFLKEYALFLREEGELEKAKHLLYHYLEHEPGDVDMQSVLADMEER >gi|307679214|gb|GL457033.1| GENE 19 16922 - 17962 917 346 aa, chain - ## HITS:1 COG:no KEGG:EF1552 NR:ns ## KEGG: EF1552 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 346 1 346 346 685 99.0 0 MKYNYSRGENKVAIIYGETFASVLKKRPVTTESIVVLANQRYYDLFSEKINYAFGEQLGL NWYICRNDVHCNDLSELESVLRFLADWPENQDVLLIGLGNEGVLQLTAFLHQVSKCSSKC WLMPVSVQALRQGLLPSVTIQQAQHATMHIENHSEEILFDSTLTNKKGAAPLIDLLVFIR AGLVCDYAYLQMLYQTYPDKKRLNQTSFNGILDELLSFYEQAGEKVDQFGRVFEAAFATT ENGHLLSGPMKRLLGLLLQVLWSQQVNHFDFQFKNFIVWFIRLGFPVAFPKEILSADYAE QVLAHTETLGPPMVLEKIGQLGAALKPTPDQLLTTIERYQEILKEI >gi|307679214|gb|GL457033.1| GENE 20 18269 - 18544 179 91 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 [Haemophilus influenzae PittEE] # 4 91 6 93 96 73 38 3e-12 MANKAELIENVASSTGLTKKDATAAVDAVFSTIQETLAKGEKVQLIGFGNFEVRERAARK GRNPQTGQEIQIAASKVPAFKPGKALKDAVK >gi|307679214|gb|GL457033.1| GENE 21 18792 - 20102 1840 436 aa, chain - ## HITS:1 COG:SP1709 KEGG:ns NR:ns ## COG: SP1709 COG1160 # Protein_GI_number: 15901543 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pneumoniae TIGR4 # 1 436 1 436 436 692 78.0 0 MANPTIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGG IDLGDEPFMDQIKHQAEIAIDEADVIIFVASGREGITDADELVAKILYRSNKPVILAVNK VDNPEMRNDIYEFYALGLGDPFPVSGSHGLGIGDVLDEAVKHFPNTSEEEDEDTIKFSLI GRPNVGKSSLINAILGEDRVIVSDIEGTTRDAIDTYFESEEGQKFLMIDTAGMRKRGKVY ESTEKYSVMRAMRAIERSDIVLMVLNAEEGIREQDKRVAGYAHEAGRGIIIVVNKWDTVK KDTNTMRDFEAEIRDEFQYLDYAPIIFVSALTKQRLNKLPELIETVSMNQNLRIPSALLN DVVMDAVAINPTPTDKGKRLKIFYATQVAVKPPTFVIFVNEEELMHFSYARFLENQIRKA FTFEGTPIKIIPRRRK >gi|307679214|gb|GL457033.1| GENE 22 20276 - 21487 2024 403 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238857123|ref|ZP_04647375.1| 30S ribosomal protein S1 homolog [Enterococcus faecalis TUSoD Ef11] # 1 403 1 403 403 784 100 0.0 MTDFEDKQVANNETMEDAMNSVQEVSVGDIVKGEVLAIEDKQVVVGIEGAGVEGVVPAKE LSTLPVEDVHELVKVGDVLDLVVITSIGKDKENGSYLLSKRRLDAKKVWEEIEQDFQAGK VIEAPVTNVVKGGLVVDVGVRGFVPASMVEDHFVADFSEYKGQTLAFKIIEIEPSENRLI LSHKAVVEAEKESKKEELLSSLHDGDVVEGKVARLTDFGAFIDLGGVDGLVHVSEIAHQH VGKPSDALTVGEDVQVKILSINPEEGRISLSIKETLPGPWTDIETKAAAGTVLDGTVKRL TSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDQVQVKVLEVNPEEHRIALSIKA LEPKPESQEEPKEEQEYELPEENIGFTMGDILGDALSDAKEEE >gi|307679214|gb|GL457033.1| GENE 23 21601 - 22281 809 226 aa, chain - ## HITS:1 COG:SP1603 KEGG:ns NR:ns ## COG: SP1603 COG0283 # Protein_GI_number: 15901443 # Func_class: F Nucleotide transport and metabolism # Function: Cytidylate kinase # Organism: Streptococcus pneumoniae TIGR4 # 1 215 1 216 223 240 63.0 1e-63 MGKISIAIDGPASSGKSTVAKILAKQLNYVYCDTGAMYRAITYLALQNQIDIQAEEPLVA LCVNHTISFQQAENGQRVFIDGHEVTEAIRQPDVTNAVSAVSKHAKVREEMVALQQKIGQ AGGVVMDGRDIGTAVLPKAEVKIFLVASVEERAERRFKENQEKGIETDFETLKAEIERRD YLDSTREVSPLVQASDAVKIDTTGLTIEEVVAAIQNVIKQKGFELF >gi|307679214|gb|GL457033.1| GENE 24 22518 - 23144 718 208 aa, chain - ## HITS:1 COG:no KEGG:EF1546 NR:ns ## KEGG: EF1546 # Name: not_defined # Def: LysM domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 208 1 208 208 169 100.0 6e-41 MSKKDKKKNQAREPWEQSIYEPDQNGGGSRLAKRQQQRGNSLFLTVLVILLLLIIAIPIG TFLWMMQDKKPNESASKNSQPSSSLVQSSSKEKKKESTSKSVESSEPASSQPAENTTPSS SDAAAQQQQDQQAQQQQQQQQEQQQQQEAQNQQQQQAQNQQPVYDTVQSGEGARQVAERN GMTLEQILALNPGIDTSVFYPGQPLRIK >gi|307679214|gb|GL457033.1| GENE 25 23220 - 24656 1493 478 aa, chain - ## HITS:1 COG:lin2056 KEGG:ns NR:ns ## COG: lin2056 COG0514 # Protein_GI_number: 16801122 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA helicase # Organism: Listeria innocua # 1 468 1 460 467 341 42.0 2e-93 MTLEQELFTRFGYAAFKPGQKEVITNLLDGMNTLAVLPTGTGKSLCYQFVGQKLEGLTVI VSPLLSLMEDQVRQLQRQGIKGAVALNSTLQYSEKRYILAKMFQYDYLFLSPEMLLQQEV LSVLQRQKIALFVVDEAHCVYQWGVDFRPEYSKLDLVQKQLDFPLTLALTATATPVVQHA IIKQLFSHGSYQEVLSSVNRKNIGLFVKETSEKEEVLLDYLSKTAGKIIIYCATRNKTEQ ISQLIQAKTSFKVAYYHGGLEASERSRLQEQFIDNQIDILCATNAFGMGIDKPDVRGVIH FDLPDSLENYLQEIGRAGRDGQKSWALLLYKKGDEFIHRFFLEETRANRATLKSLIEGEE QAGLLENATELQQKWVQGYLAKDYSFEELEHRLEEKEKDRQAQLRGMLTYIETTTCRRTL IQTYFQESIVKQSLETCCDNCALFFDIYQDSIVKSNKTSNQNEEGWRSKFLKLFKERD >gi|307679214|gb|GL457033.1| GENE 26 24663 - 25697 657 344 aa, chain - ## HITS:1 COG:BH1606 KEGG:ns NR:ns ## COG: BH1606 COG4955 # Protein_GI_number: 15614169 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 21 337 26 347 359 86 25.0 7e-17 MEATFILALLSHGYKVRASTLYHLLKGKRTSSVLIYGFLYDCLRFIGWWPTISEQAYFQF LEKLSKAKQIQYHKETNEIQLTKEGQLFLKEHHFSLLDYPAIDLYRFGRSDRESWQLIQF AVQVTSYLSFEEKQYIPLLSTPIPQLYLKRWLQKDKKEQRIQSIKEELLRGFELLPEAES DYLVAQLSGYQQTGKVPQQLTSDKTALEQRLWHTQAVHHLLQLIMYGGNYPALQTLVWPY LEKNLNKSMQETQRLLTEGKTLQEIAEQRKIKLSTIHDHLLELAIQGQLQASVYLEKEAI LQNLAQTEQNPRLWVYRDWRAQEATLSYLDFRLYQIQQIWQEKE >gi|307679214|gb|GL457033.1| GENE 27 25733 - 25951 246 72 aa, chain + ## HITS:1 COG:L176167 KEGG:ns NR:ns ## COG: L176167 COG1141 # Protein_GI_number: 15673687 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Lactococcus lactis # 1 70 1 67 67 66 42.0 1e-11 MQSRLVPEKCIACGLCQVYAPNIFDYDDHGIVLFKDEPHARQQFIPENERENVLKAYRKC PTRAIEISKNEC >gi|307679214|gb|GL457033.1| GENE 28 25974 - 27380 1436 468 aa, chain - ## HITS:1 COG:BS_yvbJ KEGG:ns NR:ns ## COG: BS_yvbJ COG4640 # Protein_GI_number: 16080441 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 4 292 4 295 605 102 21.0 1e-21 MKKCKNCRHVNRDTESFCEECGAPLMNESMHQEENQAQPSMNKGNESTPLRSKRSWIWVF LFVFIVLGAGSYFLGTHYFSKEQQISHFIEAIENGDAQELSKKMRTNESEFQVNPQSIKP LITYYQKNPTELKKLEKALLKDKKLHGLTIRETSQTAFFFHRYQFILTPVSVQLTTNQRG VTLAMNGREVGTSDSTTYQKELGPLAPGQYTFTATVKDSTGEPVITEEYRLLEEENYISS IPLDFKRMNFVVESNLPDADIYINDRKVGTLTNGNKTIGPLFWSKGMTIQLKKTINGEEI QTSKETIGENDFVEALSDNPTLQLNFPLASDYDARKALETFYQAFAKQVKSHTDSTEFAK KYLVGGENNPQFPSFIEALERLREKKSTDVSPDFEVTINTLQLDGKENYHVNYYLEAKNS KAKENGLRYEWINGLNDQIHLVKEPLKEGQLQFVSIDEQTLAWLEKIL >gi|307679214|gb|GL457033.1| GENE 29 27561 - 28226 615 221 aa, chain - ## HITS:1 COG:lin2059 KEGG:ns NR:ns ## COG: lin2059 COG3601 # Protein_GI_number: 16801125 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 22 216 3 192 203 115 35.0 8e-26 MTKKRIKKFVEDGSLIGGFQMNNKVQKMVSIAMLAAIGTVLQFVAFPIMPAFSFLKIDFS DIPILLGMFLYGPLAGVITAFVRSLLHLFLTGLAPQNMVGDFASFLASSIFTLPIFYFFG KKKNIRTNRILGLVSGILALTIFMSIANYFVITPIYLQLYGVTTQQFLGTSLASYVAIGI VPFNLIKGLLVSGVFLVLHAKLLPWLSKKQHTIQKKTPLTK >gi|307679214|gb|GL457033.1| GENE 30 28569 - 29285 1049 238 aa, chain - ## HITS:1 COG:SP1874 KEGG:ns NR:ns ## COG: SP1874 COG1187 # Protein_GI_number: 15901702 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Streptococcus pneumoniae TIGR4 # 3 237 2 236 240 285 63.0 7e-77 MERLQKAIAHAGVTSRRKAEELIVKGRVKVNGQVVKELGTQVSKQDTVEVDGVPIYQEEY GYYLFYKPRGVISAVSDDKGRKVVTDYFTDVTERIYPVGRLDYDTSGLLLLTNDGSFSQK LTHPKHEVDKVYVAKIKGVPTKRDLLPLAKGIRIDGKRTAPANFQILSADIKTGSSVVEL TIHEGRNHQVKKMFQAVGFPVQKLKRERYGELTLQGLRPGQYRDLTKKEISQLLNQAK >gi|307679214|gb|GL457033.1| GENE 31 29289 - 29894 790 201 aa, chain - ## HITS:1 COG:SPy0367 KEGG:ns NR:ns ## COG: SPy0367 COG1386 # Protein_GI_number: 15674517 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing the HTH domain # Organism: Streptococcus pyogenes M1 GAS # 1 175 1 175 183 162 50.0 4e-40 MTLVSQIEAILFVVGEEGIGLEELAYLLEKSTAKTYEELTKLKEHYASDNKSALNILEVG NHFVLTTKKKYASLLKKYAQSPMSNALSQAALETLSIIAYKQPISRIEIDEIRGVQTSGS IQKLVARQLIEEKGRVDGPGRAILYGTTKYFMDYFGLKSLDELPDIQQMEDELEEELPMD LFFDRYQETNPMSETTEGEEA >gi|307679214|gb|GL457033.1| GENE 32 29891 - 30676 974 261 aa, chain - ## HITS:1 COG:lin2065 KEGG:ns NR:ns ## COG: lin2065 COG1354 # Protein_GI_number: 16801131 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 242 1 239 249 194 48.0 1e-49 MQEINLKLDVFEGPLDLLLHLIQKLEIDIYDIPITAVTEQYMSYIHAMQTLELEVAGEYL VMAATLMAIKSQMLLPKQELEIIDDEDFFEEEDPREALVAQLLEYRKFKYAATVLHEKEE ERKLYYTKEPMDMDDYKEEDTTLPPNQINTIDLFLAFHAMLEKKKNRQPVETTVASDDVS IEEKITAISERMRQVQKGKAVSFDSFFDSYSKQEIVTTFMALLELMKTGVIYAEQENNYS EILLFNTETQQEDTTEVEETQ >gi|307679214|gb|GL457033.1| GENE 33 30750 - 31640 824 296 aa, chain - ## HITS:1 COG:BS_ripX KEGG:ns NR:ns ## COG: BS_ripX COG4974 # Protein_GI_number: 16079408 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Bacillus subtilis # 1 296 1 296 296 317 53.0 2e-86 MEEQLVDYLHYLQIERGLSNNTRRSYERDLKKYVAFLQEQGLHSWDEVDRYMITEFLQSL HEEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDEVTRLI ETPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLG DYAIQWIERYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQIEKNIT PHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEHFPRA >gi|307679214|gb|GL457033.1| GENE 34 31809 - 32738 1250 309 aa, chain - ## HITS:1 COG:lin2180 KEGG:ns NR:ns ## COG: lin2180 COG1073 # Protein_GI_number: 16801245 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Listeria innocua # 7 306 11 317 319 289 47.0 5e-78 MNRWLKILIALIVVIAIGLIAAGLYFYNYAVVPGKKDFINENTPGSKVVQTPEGAWFKDD KNRQEWSITSEDGLRLKAIYLPADKKSNRTVIMAHGYMGSAETMSVFAKMYHDWGYNVLA PDARGHGKSQGDYIGFGWPDRKDYVQWIEKVLTENGQQEQITLYGVSMGAATVMMTSGEK LPDNVKAIVEDCGYSTVNQELQYQLKELFNLPSFPLVNVTSGITKLRAGYFFGEASAVKQ LQKNHLPMLFIHGENDTFVPFSMLDEVYNATQGPKEKYVVPGAEHAKAYNKNPEKYKETV AAFLDKYIK >gi|307679214|gb|GL457033.1| GENE 35 32933 - 34024 1299 363 aa, chain - ## HITS:1 COG:L176316 KEGG:ns NR:ns ## COG: L176316 COG3589 # Protein_GI_number: 15672155 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 363 1 363 364 574 76.0 1e-164 MGKLGISIYPERSTFEKDKAYLDLAHKYGFKRVFTSLLQINDDREKVLAEFKKVVDYANQ LGMEVMVDINPALFEQLGISYDDLSFFHDMGAYGIRLDLGFTGQEEANMTRNPYGIKIEI NMSSGTSYVDNIMAYSPNTENLLGSHNFYPHRYTGLGYEHFVYCSEKFRKYNLNTMAFVN SHDATFGPWPTQDGLCSLEDHRDLEIATQVKHLVLTGLIDDISVGNAYASEAELAAMAEA FHAPYPSIKVDTEPEITEDERIALFDNLHSYRGDRSDYVLRSTMTRVYYKDRPFPAHTTR DIVRGDVLIDNVGYGQYKGETQIALKEMKNDGRVNVVGRISDDERFLLEFLKPWSSFKLI ENK >gi|307679214|gb|GL457033.1| GENE 36 34206 - 34955 776 249 aa, chain + ## HITS:1 COG:lin2475 KEGG:ns NR:ns ## COG: lin2475 COG0652 # Protein_GI_number: 16801537 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Listeria innocua # 57 243 4 193 194 238 62.0 7e-63 MKHKKMLAVASVAAFTLLLAGCNTTNNKGTTATSDSVAKSSESKTKDSVDLNSLDLPQLD DKVAEDQDLVQMVTSMGNIEIKLFPKQAPKTVENFMKHAKDGYYDGLTFHRVINNFMIQG GDPSGDGTGGNSIWNKPFEDEFSNQLYNIRGALSMANAGPNTNGSQFFIVQNTDDQSDGL LYDDYPKAIIDAYKKGGYPSLDKKHTVFGQVTKGMDIVDKIAKVEVGANDKPKTDVKIEK INILQEAKK >gi|307679214|gb|GL457033.1| GENE 37 34999 - 35373 513 124 aa, chain - ## HITS:1 COG:SA0358 KEGG:ns NR:ns ## COG: SA0358 COG5294 # Protein_GI_number: 15926072 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 102 5 100 122 61 37.0 3e-10 MKFIKFLVVTAIVIGGGLFGAKFYAEKNSGELAGVLDQLNPLVKEGNVYVKTKKADSVNG YGIASYTQVAADEEGKTREITFTADHELKTDHYLKVSNKGAHINTYEEVNQDQVPEKALQ AIQK >gi|307679214|gb|GL457033.1| GENE 38 35516 - 36055 630 179 aa, chain - ## HITS:1 COG:no KEGG:EF1531 NR:ns ## KEGG: EF1531 # Name: not_defined # Def: TetR family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 179 1 179 179 308 99.0 7e-83 MVRTKVYTKEKILNVAEKILVDKGFSNLTARNIADAMGISTQPIYLEFVNMDDLKRTLIK SLFHRMQLFYKADVGASDPVIALGLNFILFAQKHQKIYTALFMKAHGYEEELQQMLQTFF EERLLLDKKYVQMDKGKFVELFPKMVVIYLGLATAVTMKIIDLTKNQEIQLLSQLLIEE >gi|307679214|gb|GL457033.1| GENE 39 36280 - 37578 1642 432 aa, chain - ## HITS:1 COG:VC1282 KEGG:ns NR:ns ## COG: VC1282 COG1455 # Protein_GI_number: 15641295 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Vibrio cholerae # 1 426 6 428 446 275 38.0 9e-74 MLDKLTVWIENHLAGPMAKIANQRHLRAVRDGIIATLPLIIVGSFFLIIAFPPLPESWGI TQFLTSNAATILLPYRMTMYIMALYATFGIGASLAKSYNLDQVSGGILATIAFLLTLVPV AIPEEASKAAGVSGFVLPMANLGGAGMFVGIVTSIIAVEIYRVTDKSKFKITMPDNVPPA VARSFESLTPTLIVMLLIGSITYYLGFDWHTFVGNLVGPLVQAADSLLSVLLLVFLTTFF WFFGIHGASIVGSLARPLWLQLLEENTTAKAAGEALPRIAAEPFYQWFIWIGGAGATIGL AILLAFRAKSEYGSKLGKAILAPSIFNINEPVIFGVPIVLNPILMIPFIFAPMVLATIAW FATKLGLVSEVVFTAPWTLPGPIGAFMATGGDWRAAVLNIVLILVAILIYYPFFVAYDKN ELAKEQGKQIEE >gi|307679214|gb|GL457033.1| GENE 40 37605 - 37907 303 100 aa, chain - ## HITS:1 COG:no KEGG:EF1528 NR:ns ## KEGG: EF1528 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 100 1 100 100 137 99.0 1e-31 MENNQAMVPKFSVKSAGFLFSMGFLCGVLLPSVLLWTFSLPFNIGAMIFLPVGIAFALAY SHYFIETKTGFCKRFIWLFLISLILLELISYLWLIKGVIF >gi|307679214|gb|GL457033.1| GENE 41 38046 - 39362 2064 438 aa, chain - ## HITS:1 COG:SP1079 KEGG:ns NR:ns ## COG: SP1079 COG0536 # Protein_GI_number: 15900948 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Streptococcus pneumoniae TIGR4 # 3 438 1 434 434 610 77.0 1e-174 MSMFLDQVTIDVKAGKGGDGMVAFRREKYVPDGGPAGGDGGRGGGVVLVVEEGLRTLMDF RFNRHFKATPGENGMSKGMHGRGSEDLLVKVPPGTTVRDAETGALIGDLIENGQTLVVAK GGRGGRGNIRFASPRNPAPEIAENGEPGQERKIELELKVLADVGLVGFPSVGKSTLLSVI SSARPKIGAYHFTTLVPNLGMVTTSDGRSFAAADLPGLIEGASQGVGLGTQFLRHIERTR VILHVIDMSGMEGRDPYEDYLAINKELASHNLRLMERPQIIVANKMDMPEAEENLAKFKE QLAKERTDEYADELPIFPISGVTRKGIEPLLNATADLLEVTPEFPLYEDEVVEEETVRYG FQPEGPEFTIDREPDASWVLSGEKLEKLFEMTNFDHDETVMRFARQLRGMGVDEALRARG AKDGDIVRIGNFEFEFVE >gi|307679214|gb|GL457033.1| GENE 42 39650 - 40660 1173 336 aa, chain + ## HITS:1 COG:ECs2022 KEGG:ns NR:ns ## COG: ECs2022 COG0057 # Protein_GI_number: 15831276 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Escherichia coli O157:H7 # 4 336 3 333 333 456 69.0 1e-128 MTVKVGINGFGRIGRLAFRRIKEVSDDIEVVAINDLTSPTMLAHLLQFDSTHGTYPGTVT ATENGIVVDGEETRVYAEPDASKIPWVKENGVDIVLECTGFYTSEEKAQAHLDAGVKRVV ISAPAGAMKTIVYNVNDDTLDANDKIISAGSCTTNCLAPMAYFLNNEFGIEVGTMTTVHA YTSTQMLLDGPVRGGNLRAARSAADNTIPHSTGAAKAIGLVIPELNGKLQGHAQRVPVVD GSLTELVSILKTKVTADQVNEAMKKHTIDNPSFGYDNREIVSGDIIGTTEGSIFDPTQTE VTTAGDFQLVKTVAWYDNEYGFTCQMIRLLEKFANL >gi|307679214|gb|GL457033.1| GENE 43 40711 - 41160 547 149 aa, chain - ## HITS:1 COG:lin2070 KEGG:ns NR:ns ## COG: lin2070 COG0735 # Protein_GI_number: 16801136 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Listeria innocua # 9 148 7 146 152 201 70.0 3e-52 MDSTAALKKTKKQLHESGFKLTPQREATVLVLLENEKDHLSAEEIYFLVKQKSPEIGLAT VYRTLEILTDLKVVDKVSFNDGLARYDLRKEGAKHFHHHLLCLECGTIEEVEEDLLGEVE QIVESRYHFLVKDHRLTFHGICQSCQSKH >gi|307679214|gb|GL457033.1| GENE 44 41276 - 42157 525 293 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains [Anoxybacillus flavithermus WK1] # 14 284 10 281 285 206 41 3e-52 MRELLATTFTGIVVDENEQFYFVQKNGITFRLKKEEGTHAIGEAVEGFGYLNQKQEPALT TTIPTVRIGSYGFGTVTGTRRDLGVFVDVGLPDKDVVISLDELPTMRELWPKKEDRVMVT LKVDSKDRIWGELADEKVFKAMAKRGNAEMQNQNLTGHVYRLKLAGTYILTDDLYIGFIH PSERFQEPRLGEKVVGRVIGVRPDGVLNLSLKPRSHEVISDDALMILTFLERANDHQIPF TDKSSPDEIKQTFGISKAQFKRALGHLMKQKLIKQEDGKTILIGSLEQSKEKN >gi|307679214|gb|GL457033.1| GENE 45 42231 - 44309 2510 692 aa, chain - ## HITS:1 COG:no KEGG:EF1523 NR:ns ## KEGG: EF1523 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 692 1 691 691 879 93.0 0 MTKKCPKCGNEFDAELTTCPTCGYSLTDTTVDKEEAETTSTNIDFETQENEQHEDQLNEN IEWSELKDMSLGHVMELFGESPEEESNDDKKEESTEDNLIVSDSEDVSGLETSLQEGASE ETHDSVEESTPATEETPTHSTEEKLATDEAVNLEETTEETTTVEAETAEVSETVKSEEEA LTEISGTEVISTTSEEEIFSQPPIEDQDVTPNETLQAYIQAHRADTEMSENPSEETAETQ ELENSGEAVLTQAETPTESISDSEEGLTSAASLEAPSEADATEEKVSDSGVIPPMNETGN AQPAPAPKKSSKKVAFVALAVVLLAGGSAWAYHDQTQKAAAQEAAALTKKTDTLKDELAA FYTTKEQVFIKPDMVTVSPEKLSKQVAEIKDSEEYSQLNKQIQTLKVKQQTIQQINQLFE APIVNGNELKPAILAADQPISVKKLTGNDPFDQLMNQAIDQANQQYNQLQKAKKAVEVIY KDGKTTNQLNRDTYQAAKAEVDKVTSDKLKKELVKQVTTADQALTKVEEEQKRIAEEQAA AEQAAAEQAKQAEEQAKQAAAAKKEDAKKEETAKTEANGYTAPNSDGVYTSPLYAPDAAD IADSSNPAWTWAPGVKEKVLDTVIARGYVVPGGYSLEPAKIVNGEGYYNLYATNNQSKLL EGTTEKNVHMYLVTINAKTGWFKGNASRNAGQ >gi|307679214|gb|GL457033.1| GENE 46 44461 - 45567 1576 368 aa, chain - ## HITS:1 COG:lin1491 KEGG:ns NR:ns ## COG: lin1491 COG0568 # Protein_GI_number: 16800559 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Listeria innocua # 10 368 17 374 374 494 79.0 1e-139 MEKETSKKYEAAVAAFIKENKPKGTVVYDDLANQLATPYTLDAEAMEKLIQKVEDAGISV VDENGDPSEHSLKKDEKEAEKAQAEDLSAPTGVKINDPVRMYLKEIGRVQLLTAAEEVEL ALKIEEGDQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKG FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIG AEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQL EDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS KQLKDFLE >gi|307679214|gb|GL457033.1| GENE 47 45676 - 47562 1888 628 aa, chain - ## HITS:1 COG:lin1492 KEGG:ns NR:ns ## COG: lin1492 COG0358 # Protein_GI_number: 16800560 # Func_class: L Replication, recombination and repair # Function: DNA primase (bacterial type) # Organism: Listeria innocua # 4 623 3 622 626 451 40.0 1e-126 MAQRIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKNYMGLCPFHEERSPSFSVAEDKQIFH CFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVADTPENQQRRSLL QLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKNEQ LDETLFEPSGLFVQRDNGTFLDRFYQRIMFPINDPQGNVIAFSGRLLKTADFPGDEMPKY LNSPETTLFNKRETLFNFDKARKEIRKENTVLLFEGFMDVIAAWQSGVKSGVASMGTSLT NEQIRRLERVAKEVVICYDGDNAGVQATNRAIQLLQENSHFDLSIVSIPEKLDPDEYVRK YGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELLRELTNVQSPLERDRY LNQIAQEFQLSVHSLEEQFNQLKQEQRSVQRQERQQFYQDEMMPPPMEEPVFEENHVQNK LPLTQVQKAERSLLFRLMNEQGVRQTVQQLPDFSFAHDEYQELYFLLESYATLHQSFDIA DFINFLQDNQTKQLAIEIAYQNLSEESSEREVADLLHVIALSSIAEAIEQKKIQQQEAKR VGNQQLEAELTMEIIQLARQLKAQRTFT >gi|307679214|gb|GL457033.1| GENE 48 47879 - 50215 2438 778 aa, chain - ## HITS:1 COG:SP1623 KEGG:ns NR:ns ## COG: SP1623 COG0474 # Protein_GI_number: 15901459 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pneumoniae TIGR4 # 10 770 8 778 778 672 48.0 0 MLNKVDLKKGLSTEEVAKQKELGLQNNYEENVAKSTKDIIFDNVMTLFNFLNFAIAVCLL FVGAYSNLAFLAIIIVNMSIGIFQEIHARNLVQKLSIVAKENVHVVRNGVQQEIDTKELV MEDIVIISAGEQVPSDMEVIDGKVEANEALLTGESDLIEKEIGDTLLSGSFIVSGQAYAR VIHVGAENYAVKITQEAKVHKPIQSELVNSIRKVSKFTSWVIIPLGIILFVEAFWLRDAG IKTSVVASAAALLGMLPKGLVLLISIALTTGVIKLAKKRILVQDMYSIETLAHVDTLCLD KTGTITEGKMKVQKAIILHDKYEELFPQIIGSYLSESTDNNITMQAIRDHYEVSNRFGAK EVLAFSSERKWGAIEFPEIGTVYLGAPERLVDDSRLPEAVFTAQENGYRVLMLAIAEQQP LNETKMPYLEPLAILEIDDPIRQNAKETLAYLKEEGIDLKVISGDNPVTVSNIARRAGLP GYESYIDLSTKTTEAEVREAVQQYTVFGRVSPQQKRTIVRELKDTEHVVAMTGDGVNDVL ALREADCSIAMAEGDGATRQISNLVLLDSDFTTLPDVLFEGRRVVNNVTRVSSVFFIKTI YSFILSIICALTAIAFPFIPIQVTLIDLAIEGYPAFFLSFEGDKRKVVGKFLPTALKNAS VNALLVVANIIAVYLIGQNQGFSSLDTTTLMYYLLVGISCMAVVRACLPLNPLRIFLVFS TIIGIYVAAMLFHNILEIGFLTSQTMGLFFIMMAINIVVRVAIGFVQMKRAGKTIKDL >gi|307679214|gb|GL457033.1| GENE 49 50344 - 50928 763 194 aa, chain - ## HITS:1 COG:SPy1147 KEGG:ns NR:ns ## COG: SPy1147 COG0741 # Protein_GI_number: 15675124 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Streptococcus pyogenes M1 GAS # 2 194 12 197 199 156 45.0 2e-38 MLLLFVGLVAGLGYLGYKIHQNVETVMTFEKQVEAEVKKNKIPEYKTLALAIIYTESKGK SGDIMQSSESVYGQQEVIETPEESIAHGVKFLAEALAKAKEAGCDEWTGVQAYNYGLDYI QFVKERGGKHTTELAEEYSREVLSPLLGNDQNTKYRYYRWQALVYNGGYLYQNGGNMFYA EIVKMNRWFIEKLN >gi|307679214|gb|GL457033.1| GENE 50 51252 - 51941 493 229 aa, chain - ## HITS:1 COG:SP1616 KEGG:ns NR:ns ## COG: SP1616 COG0036 # Protein_GI_number: 15901453 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Streptococcus pneumoniae TIGR4 # 1 229 1 229 231 379 74.0 1e-105 MNKVEFSPSLMTMDLDKFKQQITFLNDHVASYHIDIMDGHYVPNITLSPWFIEELRKISK LPVSAHLMVTNPSFWVQQLVDIKCEWICMHAEVLDGLAFRLIDQIHNANLKAGIVLNPET PIESIFPYIELLDKITIMTVDPGFAGQRFIEGTLDKIVALRNLRKEKGYRYVIEMDGSSN RNSFKRIDAAGPDIYIVGRSGLFGLNEDIEKAWRMMSRDYEEMTGKKIP >gi|307679214|gb|GL457033.1| GENE 51 52079 - 53179 1448 366 aa, chain - ## HITS:1 COG:SP1617 KEGG:ns NR:ns ## COG: SP1617 COG1299 # Protein_GI_number: 15901454 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Streptococcus pneumoniae TIGR4 # 4 366 2 361 361 404 67.0 1e-112 MKKLKELNLKGHLLTAISYLIPIVCGAGFLIAIGMGFGGSSQGTLVPGEFSLWDALATMG GAGLGLLPVVISTGISFSIAGKPGIAPGFIIGLTANAVGAGFIGGILGGYLAGYLVLAIL KYVKLPNWARGLMPTLIIPFLTSITGGLIMVYIIGTPITAFTSLLTNFLDSLGNSSLLIF GGVIGLLSGIDYGGPINKTVFAFVLTMQAEGLNGPITALQLVNTATPIGFGLAFFFAKLF RKNIYTKLEVETLKSAVPMGVINIVEGVIPLVMNDIVRGVIATAIGGFVGGATTMILGAD ATVPFGGVLMIPTMSKPLAGIIAIVVNAVVTGLVLAIIKKDVTEKDMEALVEKEEEEINL EDIQIF >gi|307679214|gb|GL457033.1| GENE 52 53289 - 53738 445 149 aa, chain - ## HITS:1 COG:SP1619 KEGG:ns NR:ns ## COG: SP1619 COG1762 # Protein_GI_number: 15901456 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Streptococcus pneumoniae TIGR4 # 1 148 1 148 149 167 54.0 5e-42 MEVKDIIDLKTVKTNMNVNTKEEALKELANLLLENGNISDEKGFIKDIYDREAEGQTGIG NYLAIPHGKSAYVKKIGVAIGINSTEIPWESLDDNGVKGIILFAVGNDHKETTSHLKLLS LFARKLGNDEVVREFLQSKSPEDVVKVFS >gi|307679214|gb|GL457033.1| GENE 53 53758 - 54075 504 105 aa, chain - ## HITS:1 COG:SP1618 KEGG:ns NR:ns ## COG: SP1618 COG1445 # Protein_GI_number: 15901455 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system fructose-specific component IIB # Organism: Streptococcus pneumoniae TIGR4 # 1 103 6 108 108 125 79.0 1e-29 MKIVGVAACTVGIAHTYIAQEKLENAAKKAGVEIHVETQGTIGIENKLTDEQIKEADIVI LAIDVKISGRERFDGKRIIQVPTEVAVKSPTKLIEKAEEVMTQEK >gi|307679214|gb|GL457033.1| GENE 54 54075 - 54527 555 150 aa, chain - ## HITS:1 COG:no KEGG:CAR_c23180 NR:ns ## KEGG: CAR_c23180 # Name: not_defined # Def: hypothetical protein # Organism: Carnobacterium_17-4 # Pathway: not_defined # 1 146 1 145 145 103 45.0 3e-21 MNVNPLYQVFLNQELLSKQQVYQFIAETSAPWLTPEEKKQIEESLVNREKMGSNQIAEQV VLPHLENALLKKSEIYLIGLKTEIQEWTADIKQVKLIIVILLKENEQLKVKKEISRFTRK LANEDFLEKLLRLKTETDFYKNIEKFEEEK >gi|307679214|gb|GL457033.1| GENE 55 54517 - 55998 930 493 aa, chain - ## HITS:1 COG:lin2243 KEGG:ns NR:ns ## COG: lin2243 COG3711 # Protein_GI_number: 16801308 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Listeria innocua # 3 489 4 485 485 320 39.0 5e-87 MSSKKERGQKLLLLLSKKQDYMTAEELANCLSTSPKTVYRLIKKINDEFSEGSLILSEKG RGYKLDYERFMEQNRHLVEKESDFSPRERRNRILEELLLASPQAKNVYELFARYYVGDSV IFSDEQQLSEDLKKYDLTLKRKNRTLAIIGEERAIRKAISDRIQLLNIIDIEDLRNNKAL NFNNYDVLFTLDQVRNIEKKLDITIPHPYNVNIFSHLYILISRSRKVAISEKYQLSNEEE QELTKDLVLKKVAQTTIQQIETYLNKRLPNVEIYYLYQYLVSSRMQGSFSKVTNFSFKVM QVTQFYLEEMSAQLKILTDNDQLLLELASHIKPMINRLENGIHVKNSLLDQIKMTYETIF GKIAQVSKQVSKNYQLPAINEDENGFITLYFARMIETNQLPIRTLIMCTTGIGTSELLRV KVEKKFPELQIVEIIATRNIKKSLKDYSDIELILTTIHLQEKVPIKSLLVSAMFTMDDQY RLQRKVEEIYHER >gi|307679214|gb|GL457033.1| GENE 56 56239 - 58236 2607 665 aa, chain - ## HITS:1 COG:YPO2628_1 KEGG:ns NR:ns ## COG: YPO2628_1 COG1263 # Protein_GI_number: 16122841 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Yersinia pestis # 3 401 5 406 410 454 58.0 1e-127 MKAYMQRMGRSLMLPVAVLPAASLLVGIANWIVGTIGASPATTFLMNGGLAILNNLALLF AVGLALGMSKDKDGSAALAGLVAYLVPKTVLAPASIQAIKGFKDIAEVNPAFNSMDNNVF VGIVAGLVAAAMYNRFSGVKLPMALSFFSGKRLVPIMSAISMLAISAVLFFFWPVVYNGL VAFGKGISSLGFVGAGLYGFFNRLLIPTGLHHALNSVFWFDVAGINDIGNFLAGQQALDT GKAIVGQTGMYQAGFFPVMMFGLPAGAFAIYQCARPEKKKVTASLMLAAGFAAFFTGVTE PLEFSFMFVAWPLYVLHAVFTGISLAFAAFMHWTAGFAFSAGFVDFFLSLKNPVANHPMM LVVQGLVFAAIYYFGFRFAITKFNLMTPGREEGAGEETPDVAEGDNKFASLARRIYDGLG ADANVTSIDNCTTRLRLTVKDTGKVDQAKIKATGVPGVKVIDDTNIQVIVGTEVQFVADE MQRLYNHQAPATPVKETPVSQPVVEEKAPVSTKETELYSVANGKVIPISEVPDDVFSAKM MGDGFAVVPTDGEVSTPVAGKITSIFPTKHALGIQTDSGIEVLLHMGLDTVELQGGPFTL HVEEGQVVKQGDKIATIDLAALEQAGKKSDLIVVFTNQDIVAQYDLQKAGQTTSMNDVIG NVTVK >gi|307679214|gb|GL457033.1| GENE 57 58273 - 59106 908 277 aa, chain - ## HITS:1 COG:BS_sacT KEGG:ns NR:ns ## COG: BS_sacT COG3711 # Protein_GI_number: 16080858 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus subtilis # 1 274 1 272 276 187 38.0 2e-47 MKIKKVLNQNAVLVLDEGQEKVAVGKGVGFNKTKNDVLSRQLVERMFVMEPEGLKKLQVL LSQIEDKYFLASEEIIQHAETVLGEKLNEHINIGLSDHIAFAAENIQNNIIVRNKLLSEI EILYSEEFAIAQWAVEYLTQTLEIPFSYDEAGYIAIHIHSARSGRTDNSKSIREVTIVSE IIHLIEQELAIDIHDDKNSLSYSRLVNHLRLFIHRFQQNQYAVLDEEILEVVKKKYAESY EISKKVQVLLMRNFHYQVPNEELGYLSIHIERLRMTK >gi|307679214|gb|GL457033.1| GENE 58 59416 - 61068 1617 550 aa, chain - ## HITS:1 COG:lin0200 KEGG:ns NR:ns ## COG: lin0200 COG4166 # Protein_GI_number: 16799277 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 2 550 3 549 549 551 52.0 1e-156 MKKLKMMGIMLFVSTVLVGCGTTAETKRDEKATEKTSVSKKILNLMENSEIGSMDSIFTQ DEASINAQSNVFEGLYQLDEKDQLIPAAAKEMPEISEDGKRYTIKLREDGKWSNGDAVTA NDFVFAWRKLANPKNQANYFFLLEGTILNGTAITKEEKAPEKLGVKALDDYTLEVTLEKP VPYFTSLLAFSPFFPQNEAFVKEKGQAYGTSSEMIVSNGPFLMKNWDQSAMSWDFVRNPD YYDKEKVKSETIHFEVLKETNTVYNLYESGELDVAVLTGDFAKQNRDNPDYEAIERSKVY SLRLNQKRNEKPSIFANENVRKALAYALDKKSLVDNILADGSKEIYGYIPEKFVYNPETN EDFRQEAGALVKTDAKKAKEYLDKAKAELNGDVAIELLSRDGDSDRKVAEFIQGQLQETL PGLTINVKTVPLNNAIELMRKGDYELSVGMWGPDYQDPMTFLESSVSGNRMNYSSPTFDQ LIEEATTKYANDPETRWQTLIKAEKVLVEEDAALIPLYQEARSQLIRPGVKGIQYHNFGA TSTYKYAYKE >gi|307679214|gb|GL457033.1| GENE 59 61086 - 62462 1064 458 aa, chain - ## HITS:1 COG:TM0007 KEGG:ns NR:ns ## COG: TM0007 COG1305 # Protein_GI_number: 15642782 # Func_class: E Amino acid transport and metabolism # Function: Transglutaminase-like enzymes, putative cysteine proteases # Organism: Thermotoga maritima # 5 455 1 438 438 316 41.0 5e-86 MKYDLKYLSVPLPEEIQRVKEFGDFASADTAIDFWLTKELPQALKERLIIEKDVIKMMRM NEYPHSFAKADQMMRDTFQDYQTEELIRLKETGLADWVYIDGEPYFQLRFLANLIKTNAA YVARLREAESNQLEILRKKELKENIEQMQKNGGRKVRTTIKATIQVKKEFERPGERVRVH LPLPKACQQQSEIEILATSPEATYIAAEDAPQRTLCFETILKENQTFTVEYCYVNRMVYQ QLEESNVDKMQPSFDLEEQLPHIRFTPYLRNLADEIMGDESNPLKKARLIYDFVTTKIHY SFMREYFTISNISEYAATNLKGDCGVQAILFITLCRIAGIPAKWQSGLYVSTHYTGCHDW AQFYIEPYGWLFADLSFGGGAYRDGDRQRWNHYFGNLDVFRMVANSEIQADFQPAKMQLR ADPIDNQRGEFEYENEGLPYACLIVSQERLSMEELPFD >gi|307679214|gb|GL457033.1| GENE 60 62479 - 63444 1150 321 aa, chain - ## HITS:1 COG:FN1586 KEGG:ns NR:ns ## COG: FN1586 COG4948 # Protein_GI_number: 19704907 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Fusobacterium nucleatum # 1 319 46 365 375 262 44.0 8e-70 MEIETEEGLVGYGEGGPGIFITGETLAGTLETIELFGQAIIGLNPFNIEKIHEVMDKIST FAPAAKAAIDIACYDLMGQKAQLPLYQLLGGYDNQVITDITLGIDEPNVMAQKAVEKVKL GFDTLKIKVGTGIEADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQELADYQIEL VEQPVKRRDLEGLKYVTSQVNTTIMADESCFDAQDALELVKKGTVDVINIKLMKCGGIHE ALKINQICETAGIECMIGCMAEETTIGITAAAHLAAAQKKITRADLDATFGLETAPVTGG VSLEAKPLLELGEVAGLGISH >gi|307679214|gb|GL457033.1| GENE 61 63452 - 63544 63 30 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKIKQVHVRASKIKLKETFTIAFGDDRISG >gi|307679214|gb|GL457033.1| GENE 62 63820 - 64164 594 114 aa, chain + ## HITS:1 COG:L106356 KEGG:ns NR:ns ## COG: L106356 COG2151 # Protein_GI_number: 15672865 # Func_class: R General function prediction only # Function: Predicted metal-sulfur cluster biosynthetic enzyme # Organism: Lactococcus lactis # 9 114 6 110 110 149 73.0 1e-36 MSEQPQQRSTEEVEAIKEDILTALETVIDPELGIDIVNLGLIYEVEFAEETGDTVIKMTL TTMGCPLADVLTEQIHGVLKDIPEVNNIEVKLVWYPAWTTDKMSRYARIALGIR >gi|307679214|gb|GL457033.1| GENE 63 64262 - 64801 547 179 aa, chain - ## HITS:1 COG:no KEGG:EF1509 NR:ns ## KEGG: EF1509 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 179 1 179 179 350 97.0 1e-95 MQFTLLNQGNQAYWEATYIEAFPEEERLPFDRLLTSSQAGKFHLFVIQEADENVGILLNS QIAPEATYVFFFAIDQHHRNKRLGSTVLALLKTRYPKGVLLESEEIGKNAANEAQREKRY QFYERNGVLDTGYLIMDRGLTFHIMFAGASGFGGTQLQFLLDFHPVAKIWKKPSIDGIR >gi|307679214|gb|GL457033.1| GENE 64 65014 - 65868 436 284 aa, chain - ## HITS:1 COG:no KEGG:EF1508 NR:ns ## KEGG: EF1508 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 125 284 1 160 160 311 98.0 2e-83 MAEITVKTISAKDDLKKLFLGQEYDQQQPVKNILKARTSNVHIEKYEVVEDVFLKLTGKA TAHKDIMNSFWTTYKIMLQLVYPDFFRPAEVIGENQESYLEKPSEQNFLAVNSKYPPHDS GASAVISDRYLTYFDQVFPDYLPNPVPKKYTWNEFLLDNFTKFERVHQDPQLKRFAELTH SIGNITVVPLGFNSGRSLSFKDYWDYSLEQLSIFLASFHSWESYVHTYEMQPFLNEQYQP VALWKNHLKKDSFILPQNIEEINEYLVQVNQRIEKRGQRIVNRL >gi|307679214|gb|GL457033.1| GENE 65 66005 - 66115 71 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRKNAIATYFLDTLCVSYSRGWLRVFFSRKLRTAMV >gi|307679214|gb|GL457033.1| GENE 66 66154 - 66687 320 177 aa, chain + ## HITS:1 COG:no KEGG:EF1506 NR:ns ## KEGG: EF1506 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 177 1 177 177 281 100.0 1e-74 MEMYQVIRYFLNEMEKKIWHALLTLVLFCLYISIFDVPFTIKNTFIGRLLFPKAFMNAGS ANLIFYLISFFGFLWSIFIFAYLLNKTRLKLLNKTFPYLLEILEVCILPLVILFAYIYIY LRVHGEGFSYIRESLLQQELTYSMKWFLCLGSLAPLFFFLSTLNLTKRVRQKKDMES >gi|307679214|gb|GL457033.1| GENE 67 66703 - 67695 954 330 aa, chain - ## HITS:1 COG:SPy1892 KEGG:ns NR:ns ## COG: SPy1892 COG1073 # Protein_GI_number: 15675706 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Streptococcus pyogenes M1 GAS # 105 320 91 305 308 204 50.0 2e-52 MKWLLGLLIIFAIIGVVFSFYIANYFLKIALLKDNPWYHKKGHRLLNPDNFQERETRYTK IEEQQKQEGEAFWTESFAEDRWLKIKDETLYARCFIPYPDNHRWAICVHGYRSNGKRDMA YTALRFAEEGYNVLVPDLRAHGKSSGNKIGMGWLDRLDLLSWLSEVLAIDMEAEIILVGG SMGAATVMMASGEKLPTNVRGLIVDCGYTSVYDEFKYVLHESFHLPAFPILTIANQLALN NYGFQLKNASSVRQLHKNTLPTFFIHGTGDRFVPMTMFEENLAATQGIKKGLIVAKAPHL SSSVYEPENYYSSIFEFLEENCPAVKTISD >gi|307679214|gb|GL457033.1| GENE 68 67841 - 69133 1539 430 aa, chain - ## HITS:1 COG:BS_lysA KEGG:ns NR:ns ## COG: BS_lysA COG0019 # Protein_GI_number: 16079395 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate decarboxylase # Organism: Bacillus subtilis # 2 429 3 430 439 531 58.0 1e-150 MLFGTAKMNRENHLEIGGCDTVKLAQKFGTPLFVYDVAHIRAQARGFKQTLNQLGIKNKV VYASKAFSCLAIYQVLKEEDIACDVVSGGELFTALKGGMEPAEIEFHGNNKTPEELRYAL DNKIGTIVIDNFYEIDLLEELLATRNQTQKVLFRVSPGVDAETHDYILTGQEDSKFGFDV ASGQATEALVRLLSNPSFDVQGVHCHIGSQIFAVEGFLAAVEKMFTILEDWRQVHQFTAR VLNMGGGFGVQYTQQDEPLAPATFVEKIVYSLKGHCEQLGYPLPELWIEPGRSLIAEAGT TIYTVGAQKEVPGVRHFVSVDGGMGDNIRPALYQAVYDGFLANREGHDSVKKVTVVGKYC ESGDVLLRDILLPEVKAGDLLAISSTGAYGYSMASNYNRNPRPAVVFVEDGQAKLVARRE TYEDMTTLDC >gi|307679214|gb|GL457033.1| GENE 69 69349 - 71229 1574 626 aa, chain + ## HITS:1 COG:BS_fbp KEGG:ns NR:ns ## COG: BS_fbp COG3855 # Protein_GI_number: 16081071 # Func_class: G Carbohydrate transport and metabolism # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 7 619 47 662 671 665 53.0 0 MATLNRDQQIEEIINLEAILNLPKGTEHFVSDLHGEFEAFDHILRNGSGRIREKVQFLFK QELNAHQMDELCFIIYYPEEKLTLLENESALSYEWWLLTIRRLVEIVRSSSMKYTRSKVR KALPETYGYILEELIYQYDETTTKNGYYQQIIEKIILLGEAKRFVTELAYLIQRLIIDHL HVIGDIYDRGPAPDKIMDRLMSYHSLDIQLGNHDMIWLAAYSGSLACLANVVRICARYGN LDLLEERYAIDLTALKKFSLETYKENPAFEPKKNPYRALTEDEKQVAMRVQQAIAIIQEK LEGQIIGRRPDFNLAHRLRLDKIQGETITFDECRYTLINSCFQTVSEEQPYQLTREEKQI IDDLLTQFQSSPRLTKHMRFLMEKASLYLVYNQNLLIHGCLPLNADGTFQAYTFKGHSYS GKALVDFFQEMLEEAYAQPASTDDYATDCLWYLWCGEGSSLFGKRAMKTFERYFLAEKET HYEEKNPYYSLRDTVEVCERILDEFEVTGENRHIINGHTPVKRTKGESPIKANGTLLVID GGFSKSYQTITGIAGYTLLYNSFGLQLTAHKSFSSKETAILNNQDIHSIKQVIDRPLQRL LVKDTTIGKELLKQSQALQKQMKQNQ >gi|307679214|gb|GL457033.1| GENE 70 71324 - 72271 963 315 aa, chain + ## HITS:1 COG:SP0010 KEGG:ns NR:ns ## COG: SP0010 COG2367 # Protein_GI_number: 15899959 # Func_class: V Defense mechanisms # Function: Beta-lactamase class A # Organism: Streptococcus pneumoniae TIGR4 # 35 287 159 406 422 63 27.0 4e-10 MKKQQLSLYGIIFFLCFFLIVGFFFSSRGEDYAKESEQKVTIDSAKHEKHTKDKEENNSA NTVFFDKINDLLVASVKEFEGTVGISYLDLETGEQRSVNGQHEFYTASTIKVPLTMLVAD TVASGQKKWTDLIPYNAEEDYEEGTGIIAYNIQPEYPLKTLQEYAITYSDNIAKNMLYDT LGGDAKAKREMYQRYLHKTPSIEEPQFSSEDALVILQKLYTEKATKPDYQAIYDSMKQSV FHERMETPTTQGKVAHKIGSYDEFIHDMGILETPHPFALAIFTKGPDNAKSAAFIASVTD KLWQLQVSEYPNDNH >gi|307679214|gb|GL457033.1| GENE 71 72382 - 73479 991 365 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|300860280|ref|ZP_07106367.1| ## NR: gi|300860280|ref|ZP_07106367.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9510_01495 [Enterococcus faecalis TX0470] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9510_01495 [Enterococcus faecalis TX0470] hypothetical protein HMPREF9495_01764 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9513_03147 [Enterococcus faecalis TX0645] # 1 365 1 365 365 626 100.0 1e-178 MDRKQSDILKYEKKMPLETVERLNTQRTKILMGEIKQYRQPKKKISRKHLIIGLISIATT FTLIVKTPIGRAIEEVLGISQDTGVQTVESSGVPTKLELRSVQNEREIVLTKFVSTKNKM AFDYQFKIKDQKLKELLQKKIARNNYSQDIQLGLFREGSKEDLFGGVSSTSLYRIEKDVF YGSVISTFNKQKLVSQDQLTLHIYRLAWEDQEQHDNELKEAIKASSRSFSVENALEYQGD WTFKIPYQPIMKETIPSIKNVKKIKNIKAQSDALQTTLIMDVPNPEKNKKSRDILISVYK NGLEIPIARQIGSGFNKGEDATINISFDLSSLDHKSLYKVIVRNSYEDDAAGKELGSLEL KNTQK >gi|307679214|gb|GL457033.1| GENE 72 73480 - 73989 351 169 aa, chain - ## HITS:1 COG:BH0263 KEGG:ns NR:ns ## COG: BH0263 COG1595 # Protein_GI_number: 15612826 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Bacillus halodurans # 1 166 1 185 187 84 29.0 1e-16 MDKISTKKLVQKAKKGDGQAFVHLCQKYETVLYNAAYKMLLNEVDVADCLQETELCAWEK ITTLKNEYAFNSWIFKIMLNQVQNIFREKQKTTHWMDTYSPVPAFDDLYDLDKGLHKLPD NYRVPLVMYYYVGLSIKEIAQQLDVSTNTIKIRLSRGRKKLRTYLKETW >gi|307679214|gb|GL457033.1| GENE 73 74128 - 74517 497 129 aa, chain - ## HITS:1 COG:no KEGG:EF1501 NR:ns ## KEGG: EF1501 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 106 1 106 106 196 99.0 3e-49 MKNEERRKAIALNCQKYESDYARLVEPINELLLNLGAAISEEAAKQIILNVKRYHHGVKY LPECHLDESNQFIEDGLEALKKGDLGNGALQLFGAGLNFASFVAKAQGTKKIDAHQMLAE RFTKLLSVK >gi|307679214|gb|GL457033.1| GENE 74 74592 - 75227 786 211 aa, chain - ## HITS:1 COG:FN1733 KEGG:ns NR:ns ## COG: FN1733 COG1394 # Protein_GI_number: 19705054 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit D # Organism: Fusobacterium nucleatum # 1 207 1 206 211 196 56.0 3e-50 MARLNVNPTRMELSRLKKQLTTATRGHKLLKDKQDELMRRFIALVKENNELRIQVEQEVT DALSNFVLANATLNEAFIEELVAIPAEKVELEIIEQNILSVPVPKMIFDYDESVQEAPLD YGYVNSNSELDQAFAKISSILPKLLALANVEKTCQLLSKEIEKTRRRVNALEYMTIPQLE ETIYYIQMKLEENERGEITRLIKIKSMNKEN >gi|307679214|gb|GL457033.1| GENE 75 75232 - 76608 1792 458 aa, chain - ## HITS:1 COG:SPy0155 KEGG:ns NR:ns ## COG: SPy0155 COG1156 # Protein_GI_number: 15674363 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit B # Organism: Streptococcus pyogenes M1 GAS # 1 454 3 456 471 763 81.0 0 MIKEYRTINEVVGPLMIVEKVAGVKYEELIEVRMQNGEIRQGQVLEINGDKAMVQIFEGT SNINIRDSKVRFLGHPLELGVSPDMMGRVFDGLGRLKDNGPELLPEKKLDINGEVINPVA RDYPDEFIQTGISAIDHLNTLVRGQKLPVFSASGLPHKELAAQIARQANVLNSEEEFAVV FAAIGITFEEAEYFMEDFRQTGAIDRSVLFMNLANDPAIERIATPRMALTAAEYLAYEKG MHVLVIMTDMTNYCEALREISAARREVPGRRGYPGYLYTNLATLYERAGRIRGSKGSVTQ IPILTMPEEDKTHPIPDLTGYITEGQIILSRELYKSGIQPPIDVLPSLSRLKDKGTGEGK TRGDHAATMNQLFSAYAQGKQAKELAVILGESALSDVDKIYAAFAQRFEEEYVNQGFDTN RSIEETLDLGWELLSMLPRTELKRIKEDMLDQYLTEGK >gi|307679214|gb|GL457033.1| GENE 76 76601 - 78382 2135 593 aa, chain - ## HITS:1 COG:SPy0154 KEGG:ns NR:ns ## COG: SPy0154 COG1155 # Protein_GI_number: 15674362 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit A # Organism: Streptococcus pyogenes M1 GAS # 1 590 1 591 591 855 71.0 0 MQIGKIVKVSGPLILAENMSDASIQDICHVGDLGVIGEIIEMRGDVASIQVYEETTGIGP GEPVISTGEPLSVELAPGLIAEMFDGIQRPLDTFQEVTHSNFLGRGVKIDALDREKKWTF EPTVAVGEEVSAGDIVGVVQETPIIQHKIMVPFGVSGTIAEIKAGDFAIDETVYSVKTAK GTESFSMMQKWPVRRGRPILEKLSPKVPMVTGQRVIDTFFPITKGGAAAVPGPFGAGKTV VQHQIAKWADVDLVVYVGCGERGNEMTDVLNEFPELIDPTTGESLMNRTILIANTSNMPV AAREASIYTGITIAEYFRDMGYSVAIMADSTSRWAEALREMSGRLEEMPGDEGYPAYLGS RLAEYYERAGQVIALGKDHREGSITAISAVSPSGGDISEPVTQNTLRVVKVFWGLDSQLA QKRHFPSINWLQSYSLYSTEVGQYLDLELQGNWAAMVAEGMRILQEESQLEEIVRLVGID SLSDKDRLTLETAKSLREDYLQQNAFDDVDTFTSRTKQAKMLQLILTFGEEGQKALSLGT YFSELMAGTVEIRDRIARSKYLPEEELEKLDRLQAEIKTTIKEIIAEGGMTND >gi|307679214|gb|GL457033.1| GENE 77 78400 - 78711 416 103 aa, chain - ## HITS:1 COG:FN1737 KEGG:ns NR:ns ## COG: FN1737 COG1436 # Protein_GI_number: 19705058 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit F # Organism: Fusobacterium nucleatum # 3 103 5 105 105 99 48.0 1e-21 MGYKIGVIGDKNSILPFKLFGFEVHHAISEMQVREAIETMAKNKFGVIFITEEASTLAEE TIERYKEQVTPAIILIPSHNGTIGIGLSEIEKNVEKAIGQNIL >gi|307679214|gb|GL457033.1| GENE 78 78701 - 79702 1075 333 aa, chain - ## HITS:1 COG:SPy0151 KEGG:ns NR:ns ## COG: SPy0151 COG1527 # Protein_GI_number: 15674361 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit C # Organism: Streptococcus pyogenes M1 GAS # 4 330 2 331 332 123 29.0 6e-28 MRKPTYHQINPLIRLKETELLSEQQFQQLLEAETVEDVKNMLKSTVYQPYLTETFEEKFD YHSSEALGSLYRWLYEMAPEPAVVTLYTMRFTFHNLKILTKAERTGKDFDYLYLEDGRYS LNKVKSAIHTKNSSELEPALLEVIRDVFAYLEEGGLPQAIDILYDRAFLKQQRKLADELG YEELTKEVIAFIDLTNLSTMARGIVQHQNSNFLSTVISSAGSLSKKELLTYAEKSLVEFT AFVRTTNYGQLLEKIINKETNELNLLAFEKLKDDYLTSMYENGRTVAFGPLPLLAFLNAK EVEWKNLRLILVGKHSGFSNEKIRERMRKVNGV >gi|307679214|gb|GL457033.1| GENE 79 79719 - 80300 890 193 aa, chain - ## HITS:1 COG:no KEGG:EF1495 NR:ns ## KEGG: EF1495 # Name: not_defined # Def: V-type ATPase, subunit E # Organism: E.faecalis # Pathway: Oxidative phosphorylation [PATH:efa00190]; Methane metabolism [PATH:efa00680]; Metabolic pathways [PATH:efa01100] # 1 193 1 193 193 253 98.0 2e-66 MDAIEKIISEIKQQGKQEVEAYVTSEQTRIDQEFQAAQQEILLKQEHEIEKRQQQLLKEF KQRQQRQTLEIRQDALNKKQAYLNQLFDEVVLKMSEWSAKEFQEFMKAQLGSLELTGKAT ILLGEYSQTKVTQEWLTALSDATVQWELSEEVVPKESGFIVAKDGLDYNFLFSALVEEIQ KTEGFKVAEKLFS >gi|307679214|gb|GL457033.1| GENE 80 80317 - 80790 811 157 aa, chain - ## HITS:1 COG:SP1321 KEGG:ns NR:ns ## COG: SP1321 COG0636 # Protein_GI_number: 15901175 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K # Organism: Streptococcus pneumoniae TIGR4 # 10 156 12 158 158 142 60.0 3e-34 MMDYLINNNGGIVFAVLGMAMATIFAGIGSAKGVGFTGEAAAALTTEQPEKFGQALILQL LPGTQGLYGFVIAFLIYINLGNDMSMVQGLNYFVAALPIAFAGLFSGIAQGRVAAAGIQI LAKKPEHATKGIIYAAMVETYAILGFVISFLLVLNVK >gi|307679214|gb|GL457033.1| GENE 81 80818 - 82797 2048 659 aa, chain - ## HITS:1 COG:SP1322 KEGG:ns NR:ns ## COG: SP1322 COG1269 # Protein_GI_number: 15901176 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit I # Organism: Streptococcus pneumoniae TIGR4 # 1 659 1 662 663 360 35.0 7e-99 MAVSKMEKMTIIAAAEKEAAILQAIQGLQIVEVKRIFHSPEEEQAIKSQYSFLQAEQSTE QLRKYETMLQQLQELLLFLTRSSGKGLKIKRKVYTLEELEQTFDEETLQSYLTELKNIQE SLKQIQTDRQGLEAEEELLGRWQYLDVLPHKQQLKSSYVVHGSINLANKASFLSALSQWP TVYFEEIYQSMHHSYFTLVYLKEHQQSVTELLNQYSFEPLQYRYDVPPKEAYQQVKERYE ILQKEEKILKQQLASYHDFYESFCLAEEVLLAVIQREQARQHLLNASSFFILQTWIPVEE KAEILTAIEEKVPKDEIALTFENPTKAEIETDIPVKLANNKLVQPFEMLTEMYSLPKYEE VDPTPAMMPFYLVFFGMMVADIGYGLLMLLLSIIALKAFVLPRGMKRFADFFLILSFPTI IWGFIYGSFFGAALPPTMFGIKSPFPILSTTEDVNTILILSVIFGFIQLVVGLMINGIQL SKQKRYLDSINESYAWLGILFGLALLVVGKLVVKNEGLFTAGAILASLSAIAIIVIPMIQ SKAKLKGLAKGLYGLYGVTGYVGDLVSYTRLMALGIAGGSIASAFNMLVEFMPPVARFSV GILLLIVLHALNIFLSLLGAYVHGARLQYVEFFGKFYTGGGRAFNPLKTKEKYVNVEKK >gi|307679214|gb|GL457033.1| GENE 82 82787 - 83110 546 107 aa, chain - ## HITS:1 COG:no KEGG:EF1492 NR:ns ## KEGG: EF1492 # Name: not_defined # Def: V-type ATPase, subunit F # Organism: E.faecalis # Pathway: not_defined # 1 107 1 107 107 112 100.0 4e-24 MVQEVLEQIKAAEDAVEEHRQQAKMNCRLYEEQKQERLAELRQESEEAVEKVLTDSLATQ EKMLQLEKEQLLDETKRTEQALHERYEANKEQVIDSIIERVKDVYGS >gi|307679214|gb|GL457033.1| GENE 83 83483 - 83926 616 147 aa, chain + ## HITS:1 COG:SPy1984 KEGG:ns NR:ns ## COG: SPy1984 COG1780 # Protein_GI_number: 15675774 # Func_class: F Nucleotide transport and metabolism # Function: Protein involved in ribonucleotide reduction # Organism: Streptococcus pyogenes M1 GAS # 1 145 4 144 160 138 47.0 4e-33 MNIRYISISGNTRSFVQRLTTYAEEQHQQNEKNPTITFKEISENSPLEVETEPFFTFVPT YLDGGDGINNGNTEILTEVMREYLAFENNYRYCSGVVGSGNKNFNHQYCLTAKQYAEQFN FPFLADYELRGTQADIERIYAILKENQ >gi|307679214|gb|GL457033.1| GENE 84 83985 - 84164 224 59 aa, chain + ## HITS:1 COG:no KEGG:EF1490 NR:ns ## KEGG: EF1490 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 59 1 59 59 85 100.0 5e-16 MRNTWLAEQLQSISEEPNSFIIEETIKYIEQLEDDNESLQVALEGTIWSPKKWNEPLEK >gi|307679214|gb|GL457033.1| GENE 85 84219 - 85568 2003 449 aa, chain - ## HITS:1 COG:SP2070 KEGG:ns NR:ns ## COG: SP2070 COG0166 # Protein_GI_number: 15901889 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate isomerase # Organism: Streptococcus pneumoniae TIGR4 # 1 449 1 449 449 684 74.0 0 MSHIQLDYSKLAPFVADHELEYMQTQVTAVDKALREGTGAGNDFTGWIDLPENYDKEEFA RIKKAAAKIQSDSEVLVVIGIGGSYLGARAAIEFLTHSFNNLLSKEERKAPQIFFAGNSI SSTYLADLINVIGDRDFSVNVISKSGTTTEPAIAFRVFKELLINKYGKEEANKRIYATTD RAKGAVKVEADAEGWETFVIPDDVGGRFTVLTPVGLLPIAVSGADIDRLMEGANDARKEY GATSDLKENQAYQYAALRNILYRKGKTTEMLINYEPGMHYFSEWWKQLYGESEGKDGKGI FPAAADFSTDLHSMGQYVQEGMRNLFETVVKIENPRHSISIPEQNEDLDGLGYLQGKEID FVNTKAFEGTLLAHTDGGVPNMIVKVPTMDAYSLGYVMYFFEIAVGISGYLNGVNPFDQP GVEAYKRNMFALLGKPGFEELAKDLNARL >gi|307679214|gb|GL457033.1| GENE 86 85750 - 87096 1559 448 aa, chain - ## HITS:1 COG:lin0569 KEGG:ns NR:ns ## COG: lin0569 COG0334 # Protein_GI_number: 16799644 # Func_class: E Amino acid transport and metabolism # Function: Glutamate dehydrogenase/leucine dehydrogenase # Organism: Listeria innocua # 3 448 14 458 458 554 65.0 1e-157 MDAKQYVKNIQEKIHQLDQGQTEYLQAVDEFLPTVEGFLEKNPQYIEANVLGVLIEPERI FQFRVPWQDDQGNWHVNRGYRVQYNSAIGPYKGGLRFHPSVNLSVMKFLAFEQIFKNSLT GLPIGGGKGGSDFDPKGKSDAEVMRFCQSFMTELQKHIGPSTDVPAGDIGVGAREIGYLF GMYKRLRNYDAGVLTGKPLGYWGSQARTEATGYGTVYFVKHLLADKNDTFEGKKVAVSGS GNVAIYAMEKATELGATVITCSDSSGFVYDPEGIDVALVKELKEKNRERISKYVETRKGA TYYDKESVWDFETAYDIALPCATQNEINEKQAAILVKNGVKVVAEGANMPCTLEAVAVFA KSAVIYCPGKAANAGGVAVSALEMSQNAERLAWSFEKVDGMLDQIMQNIYETCRDTANEY QARDNFVLGANIAGFEKVAAAMLSQGLV >gi|307679214|gb|GL457033.1| GENE 87 87234 - 88520 1213 428 aa, chain + ## HITS:1 COG:L56208 KEGG:ns NR:ns ## COG: L56208 COG2081 # Protein_GI_number: 15672240 # Func_class: R General function prediction only # Function: Predicted flavoproteins # Organism: Lactococcus lactis # 2 420 6 422 423 520 62.0 1e-147 MKKFDVIIVGAGTSGMMATIAAAEAGAQVLLIEKNRRVGKKLLMTGGGRCNVTNNRPAEE IISFIPGNGKFLYSAFSQFDNYDIMNFFESNGIHLKEEDHGRMFPVTDKSKSIVDALFNR INELGVTVFTKTQVTKLLRKDDQIIGVETELEKIYAPCVVLTTGGRTYPSTGATGDGYKL AKKMGHTISPLYPTESPIISEEPFILDKTLQGLSLQDVNLTVLNQKGKPLVNHQMDMLFT HFGISGPAALRCSSFINQELTRNGNQPVTVALDVFPTKSFEEVLKNVDYMIEEQPNKVAK NAFHSLIPERLLTFYLEKLAIEEVPAKQLTEKQRLSFVELLKDFQFTVTKTLPLEKSFVT GGGISLKEVTPKTMESKLVNGLFFAGELLDINGYTGGYNVTAAFVTGHVAGSHAAEIAEY TYLPIEEV >gi|307679214|gb|GL457033.1| GENE 88 88561 - 90057 1214 498 aa, chain - ## HITS:1 COG:BH1900 KEGG:ns NR:ns ## COG: BH1900 COG0488 # Protein_GI_number: 15614463 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Bacillus halodurans # 20 497 2 478 538 277 35.0 4e-74 MRTQDSFVSEMKEEGKMKKLSIHLKEVSIHFSGKPILEIDELFVYENEKIGIIGKNGAGK STLLNLIMGKIQSDKGKVQRLNDFHYLAQVAEEITNEPEKTDKNCLLNQKNQKLSGGEKV QKRLATLFSEYPTGVILDEPTTHLDKEHRQLLVADLTYYYGTVLFVSHDRFFLNQLAEKI WEVSDGHVKEYLGNYDAYCRQKELEQQTRYNVCHQYQKEKKKLQESYAKKQAQAQKSSHV SKKQKQKQIKPSRLAGSKQKDTVQKALQKQAKAINARIDRLPDVAQAKQERKIIFPTNNQ FSLYNPYPIRIENLTFAYENRTILNQVNVQIPVNEKIALCGKNGAGKSTFLQQIEARHPA IYFSPKVRLGTYHQLDYRLKNDEPLLTYLLKRTNYSEKIVRSLLYRLGFQQENLQTKISS LSGGEAIKITLAQLFIEPNNIILLDEPTNFLDLETIQALEEFISAYQGTVIFTSHDETFV EKVATRTIYLENGKIIDK >gi|307679214|gb|GL457033.1| GENE 89 90345 - 90422 212 25 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKITLTRKTSAWGALRYFTFYDLSN Prediction of potential genes in microbial genomes Time: Wed Jul 6 17:58:27 2011 Seq name: gi|307679213|gb|GL457034.1| Enterococcus faecalis TX2141 genomic scaffold Scfld116, whole genome shotgun sequence Length of sequence - 85295 bp Number of predicted genes - 96, with homology - 90 Number of transcription units - 37, operones - 26 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 222 - 281 10.5 1 1 Op 1 . + CDS 352 - 1560 1460 ## COG3584 Uncharacterized protein conserved in bacteria + Prom 1562 - 1621 3.5 2 1 Op 2 . + CDS 1657 - 2220 979 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 2224 - 2270 12.3 - Term 2204 - 2265 19.3 3 2 Op 1 . - CDS 2266 - 2790 449 ## COG4894 Uncharacterized conserved protein 4 2 Op 2 . - CDS 2842 - 3711 996 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 3899 - 3958 5.4 + Prom 3766 - 3825 3.8 5 3 Tu 1 . + CDS 3845 - 4525 802 ## COG0692 Uracil DNA glycosylase + Prom 4595 - 4654 5.1 6 4 Tu 1 . + CDS 4681 - 5664 1308 ## COG0280 Phosphotransacetylase + Term 5700 - 5748 5.5 + Prom 5732 - 5791 8.5 7 5 Op 1 3/0.000 + CDS 5821 - 6300 606 ## COG0802 Predicted ATPase or kinase 8 5 Op 2 . + CDS 6293 - 6814 212 ## PROTEIN SUPPORTED gi|229236145|ref|ZP_04360568.1| acetyltransferase, ribosomal protein N-acetylase + Term 6848 - 6906 11.3 + Prom 6877 - 6936 12.4 9 6 Tu 1 . + CDS 6984 - 7193 278 ## EF0953 hypothetical protein + Term 7230 - 7274 12.4 - Term 7218 - 7262 12.4 10 7 Op 1 1/0.000 - CDS 7267 - 8277 983 ## COG1609 Transcriptional regulators 11 7 Op 2 . - CDS 8301 - 9308 327 ## PROTEIN SUPPORTED gi|15900011|ref|NP_344615.1| aldose 1-epimerase 12 7 Op 3 11/0.000 - CDS 9298 - 9966 641 ## COG0637 Predicted phosphatase/phosphohexomutase 13 7 Op 4 . - CDS 9959 - 12253 2267 ## COG1554 Trehalose and maltose hydrolases (possible phosphorylases) - Prom 12281 - 12340 7.8 + Prom 12357 - 12416 5.4 14 8 Op 1 1/0.000 + CDS 12534 - 14702 2483 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Term 14740 - 14799 7.2 + Prom 14738 - 14797 4.9 15 8 Op 2 . + CDS 14917 - 15741 695 ## COG3568 Metal-dependent hydrolase + Term 15742 - 15783 10.6 - Term 15727 - 15774 14.5 16 9 Tu 1 . - CDS 15801 - 16616 1172 ## COG0345 Pyrroline-5-carboxylate reductase - Prom 16664 - 16723 5.9 + Prom 16484 - 16543 6.6 17 10 Op 1 . + CDS 16743 - 17705 743 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain 18 10 Op 2 . + CDS 17686 - 17985 338 ## EF0963 hypothetical protein 19 10 Op 3 . + CDS 18002 - 18337 342 ## COG1694 Predicted pyrophosphatase + Prom 18354 - 18413 4.5 20 11 Tu 1 . + CDS 18440 - 18871 648 ## EF0966 MerR family transcriptional regulator + Term 18875 - 18916 7.2 + Prom 18877 - 18936 7.7 21 12 Op 1 . + CDS 19178 - 19543 328 ## gi|300859732|ref|ZP_07105820.1| conserved hypothetical protein 22 12 Op 2 . + CDS 19556 - 19768 206 ## gi|315144346|gb|EFT88362.1| conserved domain protein + Prom 19884 - 19943 7.7 23 13 Op 1 . + CDS 19998 - 20324 353 ## gi|315144347|gb|EFT88363.1| conserved domain protein 24 13 Op 2 . + CDS 20321 - 20566 173 ## gi|315144348|gb|EFT88364.1| hypothetical protein HMPREF9495_01808 + Prom 20582 - 20641 3.3 25 14 Op 1 . + CDS 20669 - 21082 248 ## SGO_0507 protein of unknown function/lipoprotein, putative 26 14 Op 2 . + CDS 21084 - 22646 1648 ## SAK_0322 hypothetical protein 27 14 Op 3 . + CDS 22666 - 22950 327 ## gi|315149489|gb|EFT93505.1| hypothetical protein HMPREF9499_02285 28 14 Op 4 . + CDS 22958 - 23263 266 ## gi|300859879|ref|ZP_07105967.1| conserved domain protein 29 14 Op 5 . + CDS 23220 - 23384 140 ## - TRNA 23312 - 23385 76.2 # Arg TCT 0 0 + Prom 23482 - 23541 6.3 30 15 Op 1 14/0.000 + CDS 23653 - 23961 518 ## PROTEIN SUPPORTED gi|29375551|ref|NP_814705.1| 50S ribosomal protein L21 31 15 Op 2 14/0.000 + CDS 23994 - 24338 564 ## PROTEIN SUPPORTED gi|29375552|ref|NP_814706.1| hypothetical protein EF0969 32 15 Op 3 . + CDS 24351 - 24638 485 ## PROTEIN SUPPORTED gi|29375553|ref|NP_814707.1| 50S ribosomal protein L27 + Term 24641 - 24690 7.3 + Prom 24787 - 24846 8.1 33 16 Tu 1 . + CDS 24877 - 25290 452 ## COG3223 Predicted membrane protein + Term 25306 - 25359 7.2 - Term 25293 - 25346 4.2 34 17 Tu 1 . - CDS 25361 - 26176 749 ## COG1408 Predicted phosphohydrolases - Prom 26196 - 26255 6.3 + Prom 26128 - 26187 7.5 35 18 Op 1 1/0.000 + CDS 26348 - 27412 1606 ## COG0006 Xaa-Pro aminopeptidase 36 18 Op 2 . + CDS 27426 - 27746 444 ## COG1694 Predicted pyrophosphatase + Term 27758 - 27802 5.1 + Prom 27916 - 27975 4.2 37 19 Op 1 10/0.000 + CDS 28079 - 28510 716 ## COG1302 Uncharacterized protein conserved in bacteria 38 19 Op 2 4/0.000 + CDS 28503 - 28955 646 ## COG0781 Transcription termination factor + Prom 28962 - 29021 6.0 39 19 Op 3 7/0.000 + CDS 29059 - 29904 1179 ## COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase 40 19 Op 4 . + CDS 29914 - 31260 1552 ## COG1570 Exonuclease VII, large subunit 41 19 Op 5 . + CDS 31262 - 31492 475 ## EF0980 exodeoxyribonuclease VII, small subunit 42 19 Op 6 3/0.000 + CDS 31492 - 32373 1160 ## COG0142 Geranylgeranyl pyrophosphate synthase 43 19 Op 7 . + CDS 32387 - 33202 872 ## COG1189 Predicted rRNA methylase + Term 33248 - 33300 9.4 + Prom 33285 - 33344 11.8 44 20 Op 1 . + CDS 33568 - 34125 381 ## gi|256761739|ref|ZP_05502319.1| predicted protein 45 20 Op 2 . + CDS 34153 - 34989 662 ## gi|307275466|ref|ZP_07556608.1| hypothetical protein HMPREF9521_01095 + Term 34995 - 35054 10.1 + Prom 35013 - 35072 9.8 46 21 Op 1 8/0.000 + CDS 35121 - 35570 484 ## COG1438 Arginine repressor 47 21 Op 2 . + CDS 35588 - 37261 1976 ## COG0497 ATPase involved in DNA repair + Term 37279 - 37336 18.1 - Term 37274 - 37315 7.0 48 22 Op 1 . - CDS 37352 - 37462 178 ## 49 22 Op 2 . - CDS 37530 - 38486 869 ## COG0598 Mg2+ and Co2+ transporters - Prom 38518 - 38577 7.5 50 23 Op 1 . + CDS 38761 - 39132 193 ## EF0987 putative lipoprotein 51 23 Op 2 . + CDS 39164 - 39232 79 ## + Prom 39282 - 39341 5.4 52 24 Op 1 29/0.000 + CDS 39369 - 39851 559 ## COG2001 Uncharacterized protein conserved in bacteria 53 24 Op 2 . + CDS 39866 - 40822 1029 ## COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis 54 24 Op 3 . + CDS 40838 - 41245 564 ## EF0990 cell division protein 55 24 Op 4 4/0.000 + CDS 41245 - 43473 2456 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 56 24 Op 5 28/0.000 + CDS 43501 - 44466 1010 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 57 24 Op 6 4/0.000 + CDS 44489 - 45859 1283 ## COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase 58 24 Op 7 3/0.000 + CDS 45864 - 46955 1239 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase 59 24 Op 8 25/0.000 + CDS 46964 - 48088 975 ## COG1589 Cell division septal protein + Term 48204 - 48241 0.1 + Prom 48117 - 48176 5.7 60 24 Op 9 35/0.000 + CDS 48262 - 49584 1525 ## COG0849 Actin-like ATPase involved in cell division 61 24 Op 10 4/0.000 + CDS 49611 - 50843 1636 ## COG0206 Cell division GTPase 62 24 Op 11 14/0.000 + CDS 50860 - 51537 568 ## COG0325 Predicted enzyme with a TIM-barrel fold 63 24 Op 12 . + CDS 51551 - 52195 762 ## COG1799 Uncharacterized protein conserved in bacteria + Term 52290 - 52324 -0.7 + Prom 52203 - 52262 3.3 64 25 Op 1 . + CDS 52410 - 52481 153 ## 65 25 Op 2 . + CDS 52508 - 53290 1330 ## PROTEIN SUPPORTED gi|29375583|ref|NP_814737.1| S4 domain-containing protein 66 25 Op 3 . + CDS 53301 - 53390 63 ## 67 25 Op 4 6/0.000 + CDS 53442 - 54143 939 ## COG3599 Cell division initiation protein + Term 54336 - 54378 9.0 + Prom 54355 - 54414 4.8 68 25 Op 5 . + CDS 54454 - 57234 3295 ## COG0060 Isoleucyl-tRNA synthetase + Term 57239 - 57294 12.2 - Term 57222 - 57284 16.2 69 26 Op 1 . - CDS 57286 - 58809 1815 ## COG0364 Glucose-6-phosphate 1-dehydrogenase 70 26 Op 2 . - CDS 58809 - 59477 873 ## COG1321 Mn-dependent transcriptional regulator - Prom 59548 - 59607 5.7 - Term 59590 - 59649 10.2 71 27 Tu 1 . - CDS 59650 - 60018 316 ## EF1006 hypothetical protein - Prom 60060 - 60119 4.0 + Prom 60117 - 60176 8.1 72 28 Tu 1 . + CDS 60217 - 60948 687 ## COG1489 DNA-binding protein, stimulates sugar fermentation + Term 60987 - 61021 -0.7 + Prom 60963 - 61022 6.0 73 29 Op 1 1/0.000 + CDS 61054 - 62052 1326 ## COG0673 Predicted dehydrogenases and related proteins 74 29 Op 2 1/0.000 + CDS 62079 - 63380 1320 ## COG0513 Superfamily II DNA and RNA helicases 75 29 Op 3 1/0.000 + CDS 63425 - 66130 2845 ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain + Term 66143 - 66192 5.4 + Prom 66183 - 66242 5.5 76 30 Op 1 10/0.000 + CDS 66359 - 66676 501 ## COG1440 Phosphotransferase system cellobiose-specific component IIB + Prom 66736 - 66795 6.3 77 30 Op 2 . + CDS 66818 - 68281 1733 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 78 30 Op 3 . + CDS 68325 - 68543 395 ## EF1014 hypothetical protein 79 30 Op 4 . + CDS 68563 - 68757 199 ## EF1015 hypothetical protein 80 30 Op 5 . + CDS 68757 - 69167 445 ## EF1016 hypothetical protein + Term 69170 - 69203 -0.2 + Prom 69422 - 69481 26.9 81 31 Op 1 8/0.000 + CDS 69509 - 69694 177 ## COG1440 Phosphotransferase system cellobiose-specific component IIB 82 31 Op 2 13/0.000 + CDS 69717 - 70037 482 ## COG1447 Phosphotransferase system cellobiose-specific component IIA 83 31 Op 3 . + CDS 70103 - 70573 630 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 84 31 Op 4 8/0.000 + CDS 70582 - 71379 863 ## COG1455 Phosphotransferase system cellobiose-specific component IIC + Term 71386 - 71441 10.5 + Prom 71384 - 71443 2.6 85 32 Op 1 . + CDS 71463 - 72857 1859 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 86 32 Op 2 . + CDS 72915 - 74108 1265 ## COG4552 Predicted acetyltransferase involved in intracellular survival and related acetyltransferases + Prom 74110 - 74169 6.2 87 32 Op 3 . + CDS 74191 - 74310 195 ## + Term 74337 - 74394 17.0 + TRNA 74429 - 74502 75.1 # Arg CCT 0 0 + Prom 74427 - 74486 76.3 88 33 Tu 1 . + CDS 74707 - 75039 568 ## PROTEIN SUPPORTED gi|29375603|ref|NP_814757.1| hypothetical protein EF1023 + Term 75070 - 75124 17.1 - Term 75056 - 75110 18.5 89 34 Tu 1 . - CDS 75153 - 77798 2816 ## COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase - Prom 77913 - 77972 6.4 + Prom 77869 - 77928 10.8 90 35 Op 1 4/0.000 + CDS 77968 - 78597 780 ## COG0517 FOG: CBS domain 91 35 Op 2 . + CDS 78610 - 79422 980 ## COG1806 Uncharacterized protein conserved in bacteria + Term 79426 - 79476 9.0 - Term 79408 - 79470 15.1 92 36 Op 1 . - CDS 79493 - 82024 2399 ## COG2898 Uncharacterized conserved protein 93 36 Op 2 . - CDS 82021 - 82755 551 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - Prom 82792 - 82851 8.0 + Prom 82729 - 82788 6.1 94 37 Op 1 . + CDS 82932 - 83516 552 ## EF1029 hypothetical protein 95 37 Op 2 . + CDS 83539 - 84594 1004 ## EF1030 endonuclease/exonuclease/phosphatase family protein 96 37 Op 3 . + CDS 84611 - 85288 467 ## COG0775 Nucleoside phosphorylase Predicted protein(s) >gi|307679213|gb|GL457034.1| GENE 1 352 - 1560 1460 402 aa, chain + ## HITS:1 COG:lin0225_2 KEGG:ns NR:ns ## COG: lin0225_2 COG3584 # Protein_GI_number: 16799302 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 310 401 1 89 91 103 56.0 6e-22 MKVKKLIPFLTTMMLINFGLPVAAAAESLDSLQEKEAQAKQSGELISKEINSALDDVNAK YAEIERLKTQISKAEDTLKTSKEEIEKTEKNISRRKEAVGDRMKDIQLNGDQRTWQALLD AENLSDFFNRAYAMTVLQNFEREKIESLTSEKEKLAALQEKVENTQTTLKQNEEKLQVEA SSMNNKVSELKEKMANNEELLAQISTDKQKEQQRLVSEKAAAEAQKKRAAETAKAEAAKK QAAADKQAQADAAAKLEAEAAEESSSQASSSSTSTESSSTESSSSASSSESSSTTESSTG ESSTPGTGSGRVLQMESTAYSWREAGASNLSATGIDLSKESNVVAVDPSVIPLGSLVKVS GYGFAIAGDTGGAIQGNIIDVHFDSVDQCRLWGRRQVTVEIQ >gi|307679213|gb|GL457034.1| GENE 2 1657 - 2220 979 187 aa, chain + ## HITS:1 COG:lin0816 KEGG:ns NR:ns ## COG: lin0816 COG0454 # Protein_GI_number: 16799890 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Listeria innocua # 1 185 1 185 185 172 47.0 4e-43 MIRSATKEDGKAIARLVLVILKDMELPILEEVSEEQMIDLLAEATAYPTYRYGYQRILVY EHAGEVAGIAVGYPAEDEKIIDEPLREVFKKHGLAEDVRLFIEEETLPNEWYLDTISVDE RFRGMGIGSKLLDALPEVAKASGKQALGLNVDFDNPGARKLYASKGFKDVTTMTISGHLY NHMQKEV >gi|307679213|gb|GL457034.1| GENE 3 2266 - 2790 449 174 aa, chain - ## HITS:1 COG:BS_yxjI KEGG:ns NR:ns ## COG: BS_yxjI COG4894 # Protein_GI_number: 16080945 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 159 1 159 162 66 27.0 2e-11 MSEFFIQEQQLGKVTRTIVKDQAGRSLFLLVGRWGTRGDALSLYAMNGEILASIKQVSWT FGTRFELYQRFEKVGTLRKLFNLNADFYYVQGLHWAVVGDIKAHQYSIYQVHKKIMSMDK TMLCTGDYFVLTVANDEDAPLCICIAAVLDYWLYNKKKQKTSDDFGLDFDPLTD >gi|307679213|gb|GL457034.1| GENE 4 2842 - 3711 996 289 aa, chain - ## HITS:1 COG:BH1746 KEGG:ns NR:ns ## COG: BH1746 COG0561 # Protein_GI_number: 15614309 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Bacillus halodurans # 2 281 1 277 282 172 38.0 5e-43 MIKLIASDMDGTLLDAKMSITNDNASAIREAERLGIEFMVATGRAYTEAKPALEEAGIDC AMITLNGAQVFDKDGHSLFTAGIEKETVTEVLTILSQHNVYYEISTNKGIFSEHQEKRIE NFAAHIAESMPHLTYKVAIAMASAHLSLLHITYVDRLDDILKDDSIEVLKIIGFSMDGPK VLGPAGMEVEELDDLVVTSSALNNIEINHRLAQKGIAVARVAKERGIPAEQVMTIGDNLN DVSMIQWAGVSFAMGNAELELKEYAKYETATNLENGVGEAILRAIREDL >gi|307679213|gb|GL457034.1| GENE 5 3845 - 4525 802 226 aa, chain + ## HITS:1 COG:BS_ung KEGG:ns NR:ns ## COG: BS_ung COG0692 # Protein_GI_number: 16080848 # Func_class: L Replication, recombination and repair # Function: Uracil DNA glycosylase # Organism: Bacillus subtilis # 1 220 1 220 225 312 69.0 4e-85 MKEIIHNSWQTVLSAEFEKPYYQELREFLKKEYQTQTIYPDMYHLFSALELTPFEEVKVV ILGQDPYHGPNQAHGLSFSVQPGVKVPPSLANIYKELQADLGYQPVNHGFLESWAKQGVL LLNTVLTVRAGQAYSHRGKGWEQLTDVIIEKLNEREKPVVFILWGRPAQEKIKMIDTTRH VIIKSPHPSPLSAHRGFFGSRPFSQANAALERLGETPIDWQLPETV >gi|307679213|gb|GL457034.1| GENE 6 4681 - 5664 1308 327 aa, chain + ## HITS:1 COG:L107797 KEGG:ns NR:ns ## COG: L107797 COG0280 # Protein_GI_number: 15673641 # Func_class: C Energy production and conversion # Function: Phosphotransacetylase # Organism: Lactococcus lactis # 1 324 1 325 326 421 67.0 1e-117 MELFDSLKFKVVRRNIKIVFPEATDPRILGAAARLKSDELVEPILIGDPTDIANAAMARG INTSNFIIINPNDYEKWDEMVEAFVERRNGKATKEDAEKILKDVNYFGTMLTYMGIADGM VSGAIHSTGDTVRPALQIIKTKPGVSRTSGAFLMIRGRDQERYLFSDCAINVNPTAQELA EIAVDSAKTAELFDIEPKVSLLSFSTKGSAKAPEVTKVAEATKIAQELAPEYAIDGELQF DASYVSSVAQLKAPNSKVAGEATVFVFPDLQSGNIGYKIAQRLGNFEAIGPILQGLNKPV SDLSRGANEEDVYKLSIITAAQTLMND >gi|307679213|gb|GL457034.1| GENE 7 5821 - 6300 606 159 aa, chain + ## HITS:1 COG:BS_ydiB KEGG:ns NR:ns ## COG: BS_ydiB COG0802 # Protein_GI_number: 16077658 # Func_class: R General function prediction only # Function: Predicted ATPase or kinase # Organism: Bacillus subtilis # 7 139 10 140 158 150 55.0 1e-36 MNIVLNNPLETEAIAKIIGQKAQAGDVIVLTGDLGAGKTTMTKGIALGLGISQMIKSPTY TIIREYPQGRLPLYHMDVYRVEEGADELGLDEYFEGDGLSVVEWGSLIEEELPEDYLEII LNKDSQEADKRVLEFRGTGPLAEERIAEILKTWEAREYV >gi|307679213|gb|GL457034.1| GENE 8 6293 - 6814 212 173 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229236145|ref|ZP_04360568.1| acetyltransferase, ribosomal protein N-acetylase [Chitinophaga pinensis DSM 2588] # 4 164 9 170 181 86 27 5e-16 MSEQTFSIREAVPTDADQLLSVMSKIGSETPYLVMDERGMAMSTTELAENLATLYESPNN VLLVALAGEAIIGTASVSASSKKRMEHIGEIGISILKQYWGYGLGSILMEELIRWAHESH VIRRLELTVQDRNQRAIHVYKKLGFETEAIMPRGAKTDQGEFLDVHLMRLLID >gi|307679213|gb|GL457034.1| GENE 9 6984 - 7193 278 69 aa, chain + ## HITS:1 COG:no KEGG:EF0953 NR:ns ## KEGG: EF0953 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 69 1 69 69 105 100.0 6e-22 MAKATKMNVNYRESILDRAYRLELIKKDEYAKHQEKLSLLNEKLSDGEPAQFDAKEETFW KKISQKVIL >gi|307679213|gb|GL457034.1| GENE 10 7267 - 8277 983 336 aa, chain - ## HITS:1 COG:SPy1293 KEGG:ns NR:ns ## COG: SPy1293 COG1609 # Protein_GI_number: 15675246 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 3 332 2 334 339 282 45.0 5e-76 MAITVKDVAKKAGVATSTVSRVINDHPSISESTKKKVRKVMDDLGYVPNMTARNLGKRIS SAIGVILPPLDSKERLGNPFYLEIMEAINEEARLYDMTTAIATAKSFDVLLENVKRMHLQ KQVDGFILVYSDSKDPVIDYLYENNIPFTLIGQPYQHETEIVYVDNDNQLLGKQATEFLI ENGHKNILFVTNTTHESLYFERYFGYQKAMMMQGLTVLPSVALEKPEDYMAFDDILHQNN ATALVVIDDIFALRTMQLAQIYGYQVPETLSIISFNNSIFSTLTHPYLTSIDIDTSELGR MAMKKLYELIHEELTNGVRLVIPHKLIKRETVIPVH >gi|307679213|gb|GL457034.1| GENE 11 8301 - 9308 327 335 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900011|ref|NP_344615.1| aldose 1-epimerase [Streptococcus pneumoniae TIGR4] # 27 331 29 341 345 130 29 2e-29 MKDNRITVTDIPSTNLKKITLKNDFLEVVLLNYGARLHQLLMPNKNNHWENILLSYDSYQ DVLKDQSFFGATVGPVAGRIRNGHWQNGILEQNSDGHHIHGGSKGWSFQYWTVEPFEKKD IIGVAFHLTDTISGYPGPIEATITYQLEDNHLRMISTGRSKQETLFNPTNHAYFNLSGDG KLDILSHLLSLNCQGMLELDDNKLPTGRILPASELSIRFNELTPIETILQRYPTGLDDVF SLVGSDLRQPQLCLQEPTSGRKMTIATTNQSMVLFSTTGFEAPFSINGQAMHSNYGLAIE PQEYPDIVHHPQWGSILLPANKKQTYQTVYQFNLL >gi|307679213|gb|GL457034.1| GENE 12 9298 - 9966 641 222 aa, chain - ## HITS:1 COG:L0001 KEGG:ns NR:ns ## COG: L0001 COG0637 # Protein_GI_number: 15672411 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Lactococcus lactis # 1 221 1 220 221 275 64.0 5e-74 MFKGVLFDLDGVITDTAEFHYHAWKKLGNEIGISIDRVFNEQLKGVSREDSLQLLLKYGK KEGTFSSEEFAQLAQRKNDYYLEMIQAITPEDVYPGIFSLLTELRAANIKIALASASKNG PFLLEKMQLTPLFDAIANPADVQAGKPAPDIFILAAKEIDLTPAECLGIEDAKAGIQAIL ASGAQPVGVGRKEELGEGLPIVPETSALTFDYLKKVWLDHEG >gi|307679213|gb|GL457034.1| GENE 13 9959 - 12253 2267 764 aa, chain - ## HITS:1 COG:NMB0390 KEGG:ns NR:ns ## COG: NMB0390 COG1554 # Protein_GI_number: 15676304 # Func_class: G Carbohydrate transport and metabolism # Function: Trehalose and maltose hydrolases (possible phosphorylases) # Organism: Neisseria meningitidis MC58 # 6 759 4 752 752 937 63.0 0 MKQIKRLFQIDPWKIRTTHLDKENLRLQESLTSIGNGYMGMRGNFEEHYSGDHHQGTYLA GVWYPDKTRVGWWKNGYPEYFGKVINAINFIAMDLQIDGQTIDLATTPYEDFSLELDMQN GVLSRQFTIQTPKNKVRFSFERFLSLEKKEAAYIHLTIEMLEGTGTITLHSKLDGDVQNE DSNYEEHFWEERAIETQETLGFVTTKTIPNNFEIERFTVTAGMRHFIDGASVVPTYTQQP LALTAELTVSLNEGETTAITKEVLVVTSRDVPETQQITRVNKLFAEMTTLYPEAKAGQAA AWAKRWQLADVVIEGDDEAQQGIRFNLFQLFSTYYGEDDRLNIGPKGFTGEKYGGATYWD TEAYAVPLYLALAKPEVTKNLLKYRHNQLPQAIHNAQQQGLKGALYPMVTFTGVECHNEW EITFEEIHRNGAIAYAIYNYVNYTGDEDYLKDAGLEVLVAIARFWADRVHFSQRHKQYMI HGVTGPNEYENNINNNWYTNTIAAWVLRYTRESYLKFQEETTLKIADDELAKWADIVENM YFPVDNELGIFVQHDTFLDKDLMPVSDLPLSELPLNQHWSWDKILRSCFIKQADVLQGIY FFNDAFSLEEKRRNFNFYEPMTVHESSLSPSIHAVLAAELGMEEKAVEMYQRTARLDLDN YNNDTEDGLHITSMTGSWLAIVQGFAQMKTDHQQLKFAPFLPATWTAYSFHINYRNRLLF VEVSADQVAFTLLDGPAIPLTVYDQKYTLKDRLVLPIRKEEVHV >gi|307679213|gb|GL457034.1| GENE 14 12534 - 14702 2483 722 aa, chain + ## HITS:1 COG:SPy1986_1 KEGG:ns NR:ns ## COG: SPy1986_1 COG1263 # Protein_GI_number: 15675776 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Streptococcus pyogenes M1 GAS # 2 454 6 457 472 659 71.0 0 MKKMFSFEFWQKFGKALMVVVAVMPAAGLMISIGKSLPLIDPNLGLLVTTGGVLESIGWA IIGNLHLLFALAIGGSWAKDRAGGAFAAGISFVLINRITGAIFGVTNEMLADEQAFTHTL FGTKIMVKGFFTSVLEAPALNMGVFVGIIAGFVGAMAYNKYYNYRKLPDALSFFNGKRFV PFVVILWSTIVSIVLALIWPNIQAGINNFGLWIAQSQDSAPILAPFLYGTLERLLLPFGL HHMLTIPINYTQLGGTYEILSGAQAGTQVFGQDPLWLAWATDLVNLKGAGDMSKYQFVLE NWTPARFKVGQMIGSSGILMGMALAMYRNVDADKKAKYKSMYFSAALAVFLTGVTEPLEF MFMFAAMPLYVIYAVIQGAAFAMADILPLRVHSFGNIELLTRTPLAIKAGLGGDLINFVL MVIIFGVVTYFLANFLIKKFNYATPGRNGNYDNDNGEEIASGAAGSGVVDQQIAQIVYLL GGKQNIKEVDACMTRLRVSVKDREKVGSEEAWKRAGAMGLIVKDNGVQAVYGPKADVLKS DIEDLLASGVDIPEPVIAESTAGVPTTNFLGKKKDFVAVATGEVIPMAQVNDPVFSQKMM GDGFAVKPLEGEVVAPISGKVLSVFPSKHAIGLQTEEGIEVLVHMGIDTVEMATPAFESF VKEGQSLKAGTKLAKMNLDVIEQAGKETTIIVAFTNSDKVEQVVINQLGTTTAGTVIGQI EI >gi|307679213|gb|GL457034.1| GENE 15 14917 - 15741 695 274 aa, chain + ## HITS:1 COG:SPy1985 KEGG:ns NR:ns ## COG: SPy1985 COG3568 # Protein_GI_number: 15675775 # Func_class: R General function prediction only # Function: Metal-dependent hydrolase # Organism: Streptococcus pyogenes M1 GAS # 3 273 4 269 272 214 41.0 1e-55 MNLLTINTHSWLEEEPLKKLEEIAKVILSSESEIIALQEVNQKVASKKVPLEQLTTFCPI ATQTPIHEDNFAYLIVQYLAEKGQHYYWSWEMSHIGYAIYEEGNALLSKCPLTSEALLIS ESQEPTNYRTRKILVAETESSKGTLTVVSGHFSWWETPCTGFAYEWLQLEKYLATGQQPL VILGDLNNPAGTTGYQLVENSYLPIQDAFVVAEETSGEATVEKKIDGWEENEAALRIDYA FVPKQWHVRKYEVIFDGRKTPIVSDHFGLLIQLK >gi|307679213|gb|GL457034.1| GENE 16 15801 - 16616 1172 271 aa, chain - ## HITS:1 COG:L135991 KEGG:ns NR:ns ## COG: L135991 COG0345 # Protein_GI_number: 15673866 # Func_class: E Amino acid transport and metabolism # Function: Pyrroline-5-carboxylate reductase # Organism: Lactococcus lactis # 3 267 4 262 262 180 42.0 3e-45 MKISFIGAGNMASAIAKGALKKQFIAAENLYFYDIQVEKTAAFAQEIGAHAVASPQEAIT VADLVILAVKPQFVQAALLEAKEAILDKQPLIVSIAAGTTIAELYQLFETTQPLRLVRVM PNMNALIGAGAAAVCGNAFASPEDIQTVLSLFRAVGQAWELEEQYFSIFTAIAGSTPAYA FLFIDSIARAAVKNGMNKELALEIATQAVLGSAQTLANSTENPWTLIDQVSSPGGTTVAG IVELENNAFISTVIKGIEATILRDQELAKQN >gi|307679213|gb|GL457034.1| GENE 17 16743 - 17705 743 320 aa, chain + ## HITS:1 COG:BH3679 KEGG:ns NR:ns ## COG: BH3679 COG4753 # Protein_GI_number: 15616241 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Bacillus halodurans # 190 309 141 254 257 84 40.0 2e-16 MASKEEQYVAFYQFLETLDCYLTTTNALENEVAQFKENPHREIAGFMLASSETIDVPKGF IRMLYCLEQDGNAYLDQQRCSFSAGQVMIVNEATSVSYQGQGMSMIIFYFKKHYFLDTLL NQLAEEPVMYRFFTEIASSEFENIPRYFVFASQPNSDVHVYSLLLLKQIVKMAYFNNKVT KAAFVLLVVELGQLPREALKMQDNYLSNHQRVEVILAYIEQQIAHVTLAEVAAKFHFHPN YLSNFLKDKTNKTFTEIVLAYRIQLAKNYLKQTDLSIQTIVERIGYQDKAFFYKRFKEEM GMTPKQYRQKEGMADVRRSL >gi|307679213|gb|GL457034.1| GENE 18 17686 - 17985 338 99 aa, chain + ## HITS:1 COG:no KEGG:EF0963 NR:ns ## KEGG: EF0963 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 99 1 99 99 147 100.0 2e-34 MYEEVFEEFQLTVVELPIEFVDDLPVYRGHLKELTFLSAEASSRKKLYQQLLQAYLLYRE ENQAVVEEEEITSSLLSTEQLLKYYDGETFDGFQLPSNE >gi|307679213|gb|GL457034.1| GENE 19 18002 - 18337 342 111 aa, chain + ## HITS:1 COG:BH3997 KEGG:ns NR:ns ## COG: BH3997 COG1694 # Protein_GI_number: 15616559 # Func_class: R General function prediction only # Function: Predicted pyrophosphatase # Organism: Bacillus halodurans # 6 94 10 99 101 103 64.0 6e-23 MDTMAKINQFRDERNWRPHHNEKDLALSICLEAAELLELFQWKTAEEGIKQEERIKEELA DVLIYSYMMADNLGFDLDEIIEEKLKKNALKYPVPEKQVLKQMNRRTSKKE >gi|307679213|gb|GL457034.1| GENE 20 18440 - 18871 648 143 aa, chain + ## HITS:1 COG:no KEGG:EF0966 NR:ns ## KEGG: EF0966 # Name: not_defined # Def: MerR family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 143 116 258 258 219 73.0 2e-56 MITGTEIDFIVSDSLKALALYKEIFEVHVVEATKYPVGRNEVVFNLYDTRFHMLDANEEF GLKAPDSEHPNTIWFNITVADIVQTHKKALANKCIEMQPVTEMMEGAIQNSLFVDPFGYM WMVHQINQELNFEERTEILEKEV >gi|307679213|gb|GL457034.1| GENE 21 19178 - 19543 328 121 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|300859732|ref|ZP_07105820.1| ## NR: gi|300859732|ref|ZP_07105820.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] conserved domain protein [Enterococcus faecalis TX2141] conserved domain protein [Enterococcus faecalis TX0012] conserved domain protein [Enterococcus faecalis TX0645] # 1 121 1 121 121 171 100.0 2e-41 MKNKKRIKFGILIATIIAIAIIGTIGVKKMNEPTEKERQIAFLEKHEEEMTEYIKQSELD KVASVEYLWNTVKSDKGMAFTKEFLTIKTNIYDGRNIKINGFWINIFVDNVRDPKKISNI N >gi|307679213|gb|GL457034.1| GENE 22 19556 - 19768 206 70 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315144346|gb|EFT88362.1| ## NR: gi|315144346|gb|EFT88362.1| conserved domain protein [Enterococcus faecalis TX2141] conserved domain protein [Enterococcus faecalis TX0645] # 1 70 1 70 70 106 100.0 5e-22 MSDLVNYYNVYANLSQASYKGRPQSKSLAKLDDNQLKEMEIKNMLHSIFPTPKTPTEMTS VLSTSNQTTL >gi|307679213|gb|GL457034.1| GENE 23 19998 - 20324 353 108 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315144347|gb|EFT88363.1| ## NR: gi|315144347|gb|EFT88363.1| conserved domain protein [Enterococcus faecalis TX2141] conserved domain protein [Enterococcus faecalis TX0645] # 1 108 30 137 137 164 100.0 3e-39 MNEPTEKERQIAFLKEHEEEMTSFIKENSSQDKVVKYYWNTVEKRKSMAFSKENLTIKFD LIDVNKTEKDNYYNAGNTLVIDTDTTKLDEINSLWTVHDIDESRGESE >gi|307679213|gb|GL457034.1| GENE 24 20321 - 20566 173 81 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315144348|gb|EFT88364.1| ## NR: gi|315144348|gb|EFT88364.1| hypothetical protein HMPREF9495_01808 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9513_00443 [Enterococcus faecalis TX0645] # 1 81 1 81 81 124 100.0 3e-27 MTELKINYNIYVDLSKSSYTDRKNSFSYNELKDWKKDRYDSNQSVPFTFPNAKDAHGNDA STVYLQPDNTVKKNQRKKLGR >gi|307679213|gb|GL457034.1| GENE 25 20669 - 21082 248 137 aa, chain + ## HITS:1 COG:no KEGG:SGO_0507 NR:ns ## KEGG: SGO_0507 # Name: not_defined # Def: protein of unknown function/lipoprotein, putative # Organism: S.gordonii # Pathway: not_defined # 1 90 1 96 138 69 39.0 4e-11 MKNKKQIKFGVLIATIIAIAIIGTIGVKKMNEPTEKERQIAFLKEHEEEMTEYVKQQNEK IAKVAFCWESLEKESVGNGLPQGAGDILSIRIQIIDNNNNKINSFGLAIKPNNWNEPTKI KELYTINADYDYYTEGG >gi|307679213|gb|GL457034.1| GENE 26 21084 - 22646 1648 520 aa, chain + ## HITS:1 COG:no KEGG:SAK_0322 NR:ns ## KEGG: SAK_0322 # Name: not_defined # Def: hypothetical protein # Organism: S.agalactiae_A909 # Pathway: not_defined # 3 512 5 534 544 282 35.0 3e-74 MADLEKYSNLYADLAQATYNGRSIQFPYSAKKWNDKQLDKYRNKEAVPFTFPNAKDAHGN DASTVYLQPDNTIKTIKEKNWVGREKVYKKGLLTDEKAGYNSYYVTDTPTLSPKTQHTYF ATRGSDGVSMDVKKGWSGNNLNDWVNNNGSFTLFNAYLPQAKLANEAMHQKIMEMSAKAP NATMSITGHSLGTMISIQAVANLPQADLAKIDKVVLFQGPDARESINKMSQQAQENIQQL EEQGKIDYYVNAFDIVSMLNRNKKGVDEIGRVHYLLPKTFTTTFDLTDKYGSSHDFGQYQ LNPDGTPKEANLKEHGYIFAAGVKVSKLIDKYLGKIMDASGESLAKNSLQFLLSLLSEEN RQKIIKEYEKIIHEAEIASQWQGKVSRIQKSLASASGSQKIELRSELAELVAKQAQQAGK EYELLVKNILQEAEDEVQTVSKEIRESAMNIRQYLSYAEVQAMIAPYEKSRLWDSAEATN TSNQAKQYKQKLTDFSGKLTTVAKNIQAYDQQARSSLFQK >gi|307679213|gb|GL457034.1| GENE 27 22666 - 22950 327 94 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315149489|gb|EFT93505.1| ## NR: gi|315149489|gb|EFT93505.1| hypothetical protein HMPREF9499_02285 [Enterococcus faecalis TX0012] # 1 94 1 94 94 115 97.0 1e-24 MDEREFQEKLEVEQKARERVAIQTVITAKKTRITTTKQNTTASLKELSEAMFQQTNSALP NALNGALQGKSAKSAEKFLKGSQRPNLKTPVKGE >gi|307679213|gb|GL457034.1| GENE 28 22958 - 23263 266 101 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|300859879|ref|ZP_07105967.1| ## NR: gi|300859879|ref|ZP_07105967.1| conserved domain protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9521_01015 [Enterococcus faecalis TX2134] conserved domain protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9521_01015 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9495_01812 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9513_00439 [Enterococcus faecalis TX0645] # 1 101 1 101 101 116 100.0 7e-25 MDEQRRKRQYLEEQYYEEKNKIHRQQEVLSNQLVNFRRETGQLVDKVNYLTKNDQWHKQQ FYHAMEQSDHLIRQEGNRYRQQLEEKEREWTRTYRKELDKL >gi|307679213|gb|GL457034.1| GENE 29 23220 - 23384 140 54 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNGRGHIEKNWINSKKTASPLKVTLSLSVCYVTGGIRTPDRPLRRRMLYPAELL >gi|307679213|gb|GL457034.1| GENE 30 23653 - 23961 518 102 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375551|ref|NP_814705.1| 50S ribosomal protein L21 [Enterococcus faecalis V583] # 1 102 1 102 102 204 100 2e-51 MYAIIKTGGKQVKVEVGQAIYVEKLNVEAGEKVVFDEVILVGGESTKVGAPTVAGATVEG TVEKHGKQKKVVTFQYKPKKHSHRKQGHRQPYTKVMIEAINA >gi|307679213|gb|GL457034.1| GENE 31 23994 - 24338 564 114 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375552|ref|NP_814706.1| hypothetical protein EF0969 [Enterococcus faecalis V583] # 1 114 1 114 114 221 100 7e-57 MIKGSFKRTGSGRIVSFELTGHAEAGPYGSDVVCAAVSALAISTVNGIDALAGFEPIVEV DDVEGGYLYVEMLTTVNQEQKNIAQILLENLLLGLQSIENENTEFIQIKTITEK >gi|307679213|gb|GL457034.1| GENE 32 24351 - 24638 485 95 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375553|ref|NP_814707.1| 50S ribosomal protein L27 [Enterococcus faecalis V583] # 1 95 1 95 95 191 100 1e-47 MLLTMNLQLFAHKKGGGSTSNGRDSESKRLGAKSADGQTVTGGSILYRQRGTKIYPGVNV GIGGDDTLFAKVDGVVRFERKGRDKKQVSVYPVAN >gi|307679213|gb|GL457034.1| GENE 33 24877 - 25290 452 137 aa, chain + ## HITS:1 COG:YPO3717 KEGG:ns NR:ns ## COG: YPO3717 COG3223 # Protein_GI_number: 16123855 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Yersinia pestis # 2 111 17 126 135 65 35.0 3e-11 MILDIVLGILGVFLLVFMASYLVDLATYLMKPMTPDNFSVIMQEIISFFMLFEFIMMILR YIQEGHHIPIRYLILICLTAILRQLMVAHGDGLQTLLLSLSILLLVVVLFILGLNGSKFY TLGKAKVEEDHEQDFHH >gi|307679213|gb|GL457034.1| GENE 34 25361 - 26176 749 271 aa, chain - ## HITS:1 COG:L42411 KEGG:ns NR:ns ## COG: L42411 COG1408 # Protein_GI_number: 15673582 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Lactococcus lactis # 5 267 10 276 278 187 38.0 3e-47 MTVYLFLALFFIIIGILSYSFFIEPNCLVIHKNQIKVTESGKTLRIVQLSDIHLKKNYSV KALKQIVEKTNTLQPDIVVFTGDLFDDYARFGIEIQDEVSQLFRKINAPYGKFAIYGNHE YSGLDTNFYETILEAADFTVLKNTGKLLPVSHRISLYVAGLEDSLYGQTDLAAALVNRPT GTPTLLLTHEPDVADSAVNKNIDLILAGHSHGGQIRLPFFTYKNQLAKKYTHGLYHLEDE TPLIVHPGIGTTKISARFGVLPTIELIELTI >gi|307679213|gb|GL457034.1| GENE 35 26348 - 27412 1606 354 aa, chain + ## HITS:1 COG:lin1391 KEGG:ns NR:ns ## COG: lin1391 COG0006 # Protein_GI_number: 16800459 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Listeria innocua # 2 354 1 353 353 428 58.0 1e-120 MMARVEKLRELMKENNLQGFLVTSPYNLRYLTNFTGTTGLAMITLDKAFFVTDFRYTEQA AEQATGFTIVKNTGHIFDEVADLAERLQLDNLAFEETQVSFADYSLLEEILPCELVPVMG LIEELREVKDEEEVAIIEKACAIADQGFAFVLEMIKPGMTEIEVANQLDFFMRSKGASGV SFETIVASGLRSAMPHGVASHKVIEKGELITLDFGCYYEGYVSDMTRTFAIGSIQPKLKE IYDIVLEAQLKVLAEAKPGLTGIQLDAIARDHIASYGYGDAFGHSTGHGIGLEIHEGPNV SFRADKQFVPGNVITDEPGIYLPGIGGVRIEDDLLITAEGNRVLTHAPKELIIL >gi|307679213|gb|GL457034.1| GENE 36 27426 - 27746 444 106 aa, chain + ## HITS:1 COG:BS_yvdC KEGG:ns NR:ns ## COG: BS_yvdC COG1694 # Protein_GI_number: 16080518 # Func_class: R General function prediction only # Function: Predicted pyrophosphatase # Organism: Bacillus subtilis # 1 103 1 103 106 99 48.0 1e-21 MDIQEYQRFISAFYKKRNWYQYDPFIRSNFLTEEVGEVCRAIRTIEIGRDRPDETVLADE ENLENLTEELGDVLDNLFILADKYDISLEMIMQKHRTKLMERYPEE >gi|307679213|gb|GL457034.1| GENE 37 28079 - 28510 716 143 aa, chain + ## HITS:1 COG:SP0434 KEGG:ns NR:ns ## COG: SP0434 COG1302 # Protein_GI_number: 15900352 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 13 136 5 125 129 114 50.0 8e-26 MSEEKNLVINANDSLGEIVIAPEVIEVIIGIAASKVEGVYGMRGTFANNVNELLGRAAHG KGVYLRTEEEGLKVDIYCYLNYGVSVPKVALEMQDRVKQQVLFMTDIDLVEVNIHVVAVV PEKIPQPDLNELFPEDEDGEENE >gi|307679213|gb|GL457034.1| GENE 38 28503 - 28955 646 150 aa, chain + ## HITS:1 COG:SPy1818 KEGG:ns NR:ns ## COG: SPy1818 COG0781 # Protein_GI_number: 15675648 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Streptococcus pyogenes M1 GAS # 7 140 8 138 150 105 44.0 2e-23 MSKTELTRHEIREKALQALFPLDFNADLTKQDAIDYALAYDNREIVSEDGEDLVPTYLDL LVGGVCSRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVPNIVALNEAV ELSKKYSDDRSRKFVNGVLSNVMKEIDSEA >gi|307679213|gb|GL457034.1| GENE 39 29059 - 29904 1179 281 aa, chain + ## HITS:1 COG:SP0825 KEGG:ns NR:ns ## COG: SP0825 COG0190 # Protein_GI_number: 15900713 # Func_class: H Coenzyme transport and metabolism # Function: 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase # Organism: Streptococcus pneumoniae TIGR4 # 1 277 1 278 285 363 66.0 1e-100 MSTVINGRELADQMQAEIQKDVEKMTQQGIQPGLVVLLVGENPASQTYVRNKERAAAKIG ILSKVEKLPETISEEELLAEIDKYNQDSRFHGILVQLPLPKHIDEEKILLAIDPKKDVDG FHPMNLGRLFVGKPEMIPCTPYGIMKMFEAYDIDLTGKRAVVIGRSNIVGKPMAQLLLMK NATVTIAHSKTEHLAEVAKEADILVVAIGRGHFVTKEFVKPGAVVIDVGMNRNQEGKLIG DVAFDEVSEIASYITPVPKGVGPMTITMLMYQTVEAAKKQK >gi|307679213|gb|GL457034.1| GENE 40 29914 - 31260 1552 448 aa, chain + ## HITS:1 COG:L0254 KEGG:ns NR:ns ## COG: L0254 COG1570 # Protein_GI_number: 15672836 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII, large subunit # Organism: Lactococcus lactis # 4 439 3 417 417 380 50.0 1e-105 MTQQYLTVTALTKYLKRKFDADPYLGRVYLTGEISNFRFRANAHQYFSLKDDHAKISAIM FKSAFQKLKFQPKEGMKVMVVGRISLYENSGSYQIYIEHMEPDGVGALYQALAELREKLG KEGLFEGPKQQLPRYPKRIAVVTSPSGAVIRDIITTVKRRYPIAQLVLFPTLVQGEQAAD DIVRNIQRADAQGDFDTMIIGRGGGSIEDLWPFNEEKVARAIHAATTPIISSVGHETDVT IADMVADVRAATPTAAAELAVPVLNEELLRISERRSRLEQSFLYLLQQRTERFQRLQNSY VFKQPERLYEGQTIKLDRMTQRLFQAMTTIHHQKQRQAQGIIAQLQQQTPKGQLRESQQQ LAFLQRNLQTQMTQLFLNKQKQFTSAVQQLDLLSPLKIMGRGYSYTTKEDRVVKTVTELQ PADQLTIHYADGTVQANVETITAKKEEF >gi|307679213|gb|GL457034.1| GENE 41 31262 - 31492 475 76 aa, chain + ## HITS:1 COG:no KEGG:EF0980 NR:ns ## KEGG: EF0980 # Name: xseB # Def: exodeoxyribonuclease VII, small subunit # Organism: E.faecalis # Pathway: Mismatch repair [PATH:efa03430] # 1 65 1 65 76 78 100.0 1e-13 MPAKEKTFEESLNALEEIVQRLERGDVPLEEALAAFQEGMALSKQCQDTLEKAEKTLTKM MTENNEEIVFEESEEA >gi|307679213|gb|GL457034.1| GENE 42 31492 - 32373 1160 293 aa, chain + ## HITS:1 COG:BS_yqiD KEGG:ns NR:ns ## COG: BS_yqiD COG0142 # Protein_GI_number: 16079484 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Bacillus subtilis # 1 265 1 271 272 220 50.0 2e-57 MTNFSQQHLPLVEKVMVDFIAEYTENERLKEAMLYSIHAGGKRLRPLLVLTTVAAFQKEM ETQDYQVAASLEMIHTYSLIHDDLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAF QLLSLSQLGLSEKVLLMQQLAKAAGNQGMVAGQMGDIEGEKVSLTLEELAAVHEKKTGAL IEFALIAGGVLANQTEEVIGLLTLFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALN KSTYPALLGIAGAKDALTHQLAEGSAVLEKIKANVPNFSEEHLANLLTQLQLR >gi|307679213|gb|GL457034.1| GENE 43 32387 - 33202 872 271 aa, chain + ## HITS:1 COG:lin1403 KEGG:ns NR:ns ## COG: lin1403 COG1189 # Protein_GI_number: 16800471 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase # Organism: Listeria innocua # 1 269 3 272 274 357 66.0 2e-98 MKKERVDVLAFNQGLFETREKAKRSVMAGLVYNDKNERLDKPGEKISVETPLHTKGQVMP YVSRGGLKLEKALNVFAINVQGKTMLDIGSSTGGFTDVALQNGARLSYALDVGYNQLAWK IRQDERVVVMERTNFRYSKPEDFTEGVPDIATIDVSFISLRLILPPLHDILKKGGSVVAL IKPQFEAGKEFVGKKGIVRDPETHQMVVEEITRFAMNNGYDVKNLDFSPITGGEGNIEFL AHLVSVEGEGSYQAPESIEEVVAHAHQKLAE >gi|307679213|gb|GL457034.1| GENE 44 33568 - 34125 381 185 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256761739|ref|ZP_05502319.1| ## NR: gi|256761739|ref|ZP_05502319.1| predicted protein [Enterococcus faecalis T3] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9521_01094 [Enterococcus faecalis TX2134] predicted protein [Enterococcus faecalis T3] Matrixin. [Enterococcus sp. 7L76] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9521_01094 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9495_01828 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9513_00422 [Enterococcus faecalis TX0645] # 1 185 1 185 185 348 100.0 8e-95 MKKMKLLISGFFVAIVLGTSVDTFAASRFPGVLSRGINGISYWLGPTATFGNTDTAIRNW MYTPWGNPLYIYKQGNNYGTSIDFYSTKLNPGIGGVTDFFDGRDRMIATGMREAPRINYY YAKINYNTMYSRASSMKNGTIARHEIGHALGIAHSNGIMIRSVSTNTNLAVDKANNDILA RIYGW >gi|307679213|gb|GL457034.1| GENE 45 34153 - 34989 662 278 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307275466|ref|ZP_07556608.1| ## NR: gi|307275466|ref|ZP_07556608.1| hypothetical protein HMPREF9521_01095 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9521_01095 [Enterococcus faecalis TX2134] # 1 278 14 291 291 525 98.0 1e-147 MLTLSLLACAFLMINFVKENEKKQVAAEKITTTSTSLKKKALKNSIDSSERKYYSYLDEI DQSKVINQSGGSQRLLMYNPEIPKDIQSLSTNIVIGKVLSLDKADAPANDPSSPYNGEIY PWTFGKIQVLKNIQGELASTIEFARPGGIMEEGRMFLNDAKENVDKLNRGRATRRMAPIQ QSRQLVEILQYEGDFYLEAGETYLFYVYWDKEWNKGLIMGYQYGSLRLEDEQQPAEELTQ RNRRAIGKTWNVVNESTKETTNLTTYLKDELGIELPAE >gi|307679213|gb|GL457034.1| GENE 46 35121 - 35570 484 149 aa, chain + ## HITS:1 COG:BS_ahrC KEGG:ns NR:ns ## COG: BS_ahrC COG1438 # Protein_GI_number: 16079481 # Func_class: K Transcription # Function: Arginine repressor # Organism: Bacillus subtilis # 1 149 1 149 149 117 40.0 6e-27 MRKQDRHRLITRLLTEKNIQKQEDFVNYLQEKGVAVTQATISRDIKDMKLIKVPSAEGGY RYSLPLETQANTSAKLAKLLKDAFVAAEQMEKYVVLRTIPGNAAACGSLIEKNYQEKLFA VINDDDSVLMIARTEEAAEKLHKELLSYL >gi|307679213|gb|GL457034.1| GENE 47 35588 - 37261 1976 557 aa, chain + ## HITS:1 COG:lin1405 KEGG:ns NR:ns ## COG: lin1405 COG0497 # Protein_GI_number: 16800473 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Listeria innocua # 1 557 1 558 563 485 49.0 1e-136 MLQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRGSSDYIRQGAN KCTLEGLFSMPKSQELKKLLEELGIETEEDSLVIQRDISASGKNVCRVNGRIVNITNLKR IGEYLVDIHGQNEHQELMQSERHIDMLDEFGGKKLLAVKEKYTQAYQEYRALEAKVRKRQ KNEKEFAQRMDMLHFQSDEIASAQLVAGEEEQLLEERNKLNNFQKIADALTISYAALNGE DDSSLDKIGTSMNELASIESLDPEYKSLSDTVQNAYYLLQEASGDLSRLIDGLELDEGRL NEVENRLELIRQMKRKYGDSIETILSYYEEITKELAEADFLEGGTGDLEALLAEKQQAAH QQALVLRKERKRLAKELEQQILTELKELYLERTEFEVRFTELEHLQENGLDGVEFYITTN PGEPLKPLVRVASGGELSRVMLAMKTIFSQTQGITSIVFDEVDTGVSGRVAQAIADKIYQ ISENSQVLCITHLPQVAAVADEHYFIEKEIVAGRTETSVRILSEKERVNEIARMLAGSEI TKLTIEHAQELLAMAKK >gi|307679213|gb|GL457034.1| GENE 48 37352 - 37462 178 36 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNDKEQSRFSKITKVVVWLMLIAIVGSTVLTAILSL >gi|307679213|gb|GL457034.1| GENE 49 37530 - 38486 869 318 aa, chain - ## HITS:1 COG:lin0651 KEGG:ns NR:ns ## COG: lin0651 COG0598 # Protein_GI_number: 16799726 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Listeria innocua # 1 294 1 292 316 179 35.0 8e-45 MINYLLLKNDYFEPCSPDDEALSWISVESPTEEEIERLVNQYHLPTDYLTGVLDDEENAR VEGFRHEKLQTPTLLLFRYPKASISPSGYLQVETVPIALIATVDNKLITVSNGPNDIVHG IQKEAFTHQYLSIEKALILALSWKMALSFNKNLQALIQQTNKLEGELQVATENSQLYQIM DIQKSLVYFEAALTDNLKVLKRLYSAEIFNHPEKHLPFLRDILIELEQGLNTTKIQLKLV DNISNTFSAIVSNNLNNVMKILTSLTIVLTIPTIIGGIYGMNVKLPFAEHEYSFWIIFAI TTLICIISIRILKKKNLL >gi|307679213|gb|GL457034.1| GENE 50 38761 - 39132 193 123 aa, chain + ## HITS:1 COG:no KEGG:EF0987 NR:ns ## KEGG: EF0987 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 123 8 130 130 170 100.0 1e-41 MVSFSAIMLFWYIFPVIVLFACNFLVSTFSLTERWKIKAPDLAIPFLFIGIHELSKDSYD ESIMPYFVISILLLGVAVALFQAYYYGEILYRRYFKMFWRLTFLLTFVLYVLLILLNISH YLL >gi|307679213|gb|GL457034.1| GENE 51 39164 - 39232 79 22 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGKCPPQLPTPWGFFVICGVIL >gi|307679213|gb|GL457034.1| GENE 52 39369 - 39851 559 160 aa, chain + ## HITS:1 COG:BS_yllB KEGG:ns NR:ns ## COG: BS_yllB COG2001 # Protein_GI_number: 16078577 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 18 158 1 141 143 206 65.0 1e-53 MGCGRLVLSSGKAGVLAMLMGEYQHNIDAKGRLIVPSKFREELGEKFVVTRGMDGCLFGY PLNEWSQLEAKLQEMPLAKKDARTFVRFFYSAATECEIDKQGRINIPANLRTHASLEKGC VVIGVSNRIEIWSDERWHAFSDEAEENFDELAETMIDFGF >gi|307679213|gb|GL457034.1| GENE 53 39866 - 40822 1029 318 aa, chain + ## HITS:1 COG:lin2147 KEGG:ns NR:ns ## COG: lin2147 COG0275 # Protein_GI_number: 16801213 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis # Organism: Listeria innocua # 5 315 2 310 312 441 72.0 1e-124 MTEEFRHYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKA LAHAKTRLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGF SYHQDAPLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQP IETTGELVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNG RISVITFHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSE NNRSRSAKLRIAEKIKSR >gi|307679213|gb|GL457034.1| GENE 54 40838 - 41245 564 135 aa, chain + ## HITS:1 COG:no KEGG:EF0990 NR:ns ## KEGG: EF0990 # Name: not_defined # Def: cell division protein # Organism: E.faecalis # Pathway: not_defined # 1 135 1 135 135 205 99.0 4e-52 MAELKKVNDFHYEAPEMDQPTVATEQDRKMQEETLPVPTILPKKKLKNVSLLEKLIGVVL VCATIGIAIATIQVRTTIVQTMNDITETQAVIKEKEDNALKLEQERSELSKSDRIKDVAK KQGLENNGDNVRTVK >gi|307679213|gb|GL457034.1| GENE 55 41245 - 43473 2456 742 aa, chain + ## HITS:1 COG:SP0336 KEGG:ns NR:ns ## COG: SP0336 COG0768 # Protein_GI_number: 15900267 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Streptococcus pneumoniae TIGR4 # 9 738 9 748 750 496 38.0 1e-140 MSKRHKFKQFMKKKNLNPMNNRKKVGIILFATSIGLFFLFAFRTTYIVATGKVAGVSLKE KTASLYEGSQVVKAKRGSILDRYGNPIAEDATSYSLYVVLSKKYTGQNNEKLYAEKKDFD DIAEILAKYTKLDKKTALKYLNNGIHEDGSTQYQVEFGTGGQNITLETRQKIEADLKKKK ISGVYFNEHPARLYPNGQFASHFIGYTKAANPDDDKEGLVGAMGLEQTYNDILSGTDGRV YFEKDIYGNALPGTVAEEKKAVDGQDIYTTLDSRLQNTLEDLMTQVNEKYEPVSMTAMLM EAKTGEIVAMSQRPTFNPETKQGLDDNGTWQNLLVESPYEPGSTIKLFTTAASMEQGQFN PNELFNRVGGIQVGDVTVNDHDYTRLNGKEYLNYRQAISWSSNIGMVKLEQKMGDEKWME YLKKFGFGTSTHSGLSGESAGKLPGTNFVDRAMSAFGQAITVTNFQMMKGFSAIANDGSM LQPHYISKIVDKNTGKETITEPQIVGTPIKAQTAQQIRTYMIDTVEDPTYGIAYDIYKVP GYHVAAKTGTAQISDGKGYVDGASQVLSSVVEMVPADNPEYVLYITLRQAKSGSPSEAMA AIANPLMKLALDIKETDPETTKVASDKVTVADYKNMTPAEALANAKVNGVDPVIIGDGEK IKKQSTPAGQTLMPNQKLILITNGTNYMPDLTGWSKSDVTKFGDLLGLTVEFKGEGYVTK QSIAAETEITEKKLTVTLEGTE >gi|307679213|gb|GL457034.1| GENE 56 43501 - 44466 1010 321 aa, chain + ## HITS:1 COG:SP0337 KEGG:ns NR:ns ## COG: SP0337 COG0472 # Protein_GI_number: 15900268 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Streptococcus pneumoniae TIGR4 # 11 321 9 324 326 296 55.0 5e-80 MEWTQIFIPIVVSFAITVSVMPLFIGYFQMKKQGQVTREDGPTWHSVKTGTPTMGGVVFL VASLITSLAMGLFFHQFTPSLLIILFILVLYGLLGYLDDFIKVFKKRNMGLNSRQKLIGQ IFGGLVFYFVYRSEGFSDTLDLFGVAEVPLGIFYGVFIIFWLVGFSNAVNLTDGIDGLVA GLGTISFGTYAIIAWKQQQFDVVIICLSVIGGLIGFFPYNRKPAKIFMGDVGSLALGGLL AAISIILHQEWTLLLIGLVYVCETASVILQVASFKLFGRRIFKMSPIHHHFEMCGWSEWK IDFVFWSVGLICSGITLWILF >gi|307679213|gb|GL457034.1| GENE 57 44489 - 45859 1283 456 aa, chain + ## HITS:1 COG:SPy1525 KEGG:ns NR:ns ## COG: SPy1525 COG0771 # Protein_GI_number: 15675424 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase # Organism: Streptococcus pyogenes M1 GAS # 1 452 1 449 452 538 61.0 1e-153 MKKITTYQNKKVLVLGLAKSGVSAAKLLHELGALVTVNDAKQFDQNPDAQDLLTLGIRVV TGGHPIELLDEEFELIVKNPGIPYTNPLVAEALTRKIPIITEVELAGQIAECPIVGITGT NGKTTTTTMIGLLLNADRTAGEARLAGNIGFPASTVAQEATAKDDLVMELSSFQLMGIET FHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTADDTLILNWNQVELQTLAKTTAA NVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADELGIPGSHNIENALAAICVAKLKNVSNA QIRQTLTNFSGVPHRTQFVGEVQQRRFYNDSKATNILATEMALSGFDNQKLLLLAGGLDR GNSFDELVPALLGLKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSEKDD TILLSPACASWDQYPNFEVRGEAFMQAVQQLKESEM >gi|307679213|gb|GL457034.1| GENE 58 45864 - 46955 1239 363 aa, chain + ## HITS:1 COG:BH2565 KEGG:ns NR:ns ## COG: BH2565 COG0707 # Protein_GI_number: 15615128 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Bacillus halodurans # 1 360 1 359 363 385 53.0 1e-107 MKILVTGGGTGGHIYPALSFVEHVKKEAPATEFLYVGTENGLESQIVPKAKIPFKTIKIQ GFRRSLSPQNFKTMYLFLTSINKAKKIIREFQPDVVIGTGGYVSGAVVYAAHQLKIPTII HEQNSIPGMTNKFLSRYVDKIAICFPDVASFFPKEKTILTGNPRGQEVVTVEKSAILSEF GLDPAKKTVVLFGGSRGALKINQAFEQAFPLFEEREYQVLYASGERYYQELQESLKLSEK KLTNISVQPYIDKMVEVMANTDLMVGRAGATSIAEFTALGLPAILIPSPYVTNDHQTKNA QSLVKVGAVEMIPDAELTGARLVAAIDDILLNNEKRQQMATASKGEGIPDASDRLYQVVK TLV >gi|307679213|gb|GL457034.1| GENE 59 46964 - 48088 975 374 aa, chain + ## HITS:1 COG:lin2140 KEGG:ns NR:ns ## COG: lin2140 COG1589 # Protein_GI_number: 16801206 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division septal protein # Organism: Listeria innocua # 87 327 12 252 270 150 35.0 4e-36 MWKISNENDIFKKRKPLPPKKSEESQPELTPWQKQNQEYLKKQAEEAASKGENEQAEVTI TLQEQSQEEPQQHLPQETVEEEEHFADRLPNVKKTRNKRLYRRLAFILTCLGTAILVALY FVSPLSRLSEVTVSGNKSVESQAIIQQSKLETGSGLWEQYSNRNYFSANIQKKFPIIKKA NIKLNGINSFKIDIQEYQIVALAATKGGYHPILENGKTLAETTKAAESGKPIFENFKEDK LIPELMASYNKLPQEIKQGISEIKYAPSKTNKDLINVYMNDGNRVIVNISDLSEKMAYYS QVAEQMDKPGIVDMEVGIFSYPYEKESEETGSEVSEDSAVENQEVVDPNAGAATDEANNG TPTNGENQEVQQAE >gi|307679213|gb|GL457034.1| GENE 60 48262 - 49584 1525 440 aa, chain + ## HITS:1 COG:L0207 KEGG:ns NR:ns ## COG: L0207 COG0849 # Protein_GI_number: 15673852 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell division # Organism: Lactococcus lactis # 1 440 1 456 456 442 50.0 1e-124 MAKTGMYVGLDIGTTSVKVVVAEYIEGQMNIIGVGNAKSDGLNRGIVVDIDQTVQAIQRA VRQAEEKAGIQIKSVNVGLPANLLEVESCQGMIAVSSESKEITDEDVRNVASAALVRSTP PERQIVAILPQDFTVDGFEGIKDPRGMLGVRMEMFGVVYTGPKTIIHNIRKCVEKAGLGI NELVITPLALTETILTDGEKDFGTIVIDMGGGQTTTSVIHDKQLKFTHVNQEGGEFITKD ISIVLNTSFNNAEALKINYGDAYPERTSANEEFPVDVIGKSEPVRVDERYLSEIIEARVE QILRKSKEVLDEIDAFELPGGVVLTGGAASMPGIVDLAQEIFEANVKLYVPNHMGLRNPV FANVISIVEYSAQLNDIYHIAKYAIPGEKSKPAQSVAVQQEVRYDTYAEQPQEEYEEFNE RESGEKVTGKIKDFFSNIFD >gi|307679213|gb|GL457034.1| GENE 61 49611 - 50843 1636 410 aa, chain + ## HITS:1 COG:L0208 KEGG:ns NR:ns ## COG: L0208 COG0206 # Protein_GI_number: 15673851 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division GTPase # Organism: Lactococcus lactis # 1 408 1 416 417 437 65.0 1e-122 MEFSLDNNINNGAVIKVIGVGGGGGNAVNRMIEENVKGVEFITANTDVQALKHSKAETVI QLGPKYTRGLGAGSQPEVGQKAAEESEQVISESLQGADMIFITAGMGGGTGTGAAPVVAK IAKELGALTVGVVTRPFSFEGPKRGRFAAEGIALLKENVDTLLIISNNRLLEVVDKKTPM LEAFREADNVLRQGVQGISDLITAPGYVNLDFADVKTVMENQGTALMGIGVASGEERVIE ATKKAISSPLLETSIDGAEQVLLNITGGLDMTLFEAQDASDIVTNAASGDVNIILGTSIN EDLGDEIRVTVIATGIDESKKDRKPHRQTRQAVQPMQQTTQSVEMDQPKSQEEASAFGDW DIRREQNTRPKVDESSLEQVDKKEFDTFHREEPNHNDDELSTPPFFRRKR >gi|307679213|gb|GL457034.1| GENE 62 50860 - 51537 568 225 aa, chain + ## HITS:1 COG:lin2137 KEGG:ns NR:ns ## COG: lin2137 COG0325 # Protein_GI_number: 16801203 # Func_class: R General function prediction only # Function: Predicted enzyme with a TIM-barrel fold # Organism: Listeria innocua # 5 224 6 224 229 232 54.0 4e-61 MIAENLTNINNQLQLACKSSQRSVADVTMIGVTKSVGIEEAAELVQLGVQNLAENRVDKL LEKKAGLEKFNDIQWHLIGNLQRRKVKLIINEIDYFHALDSLSLAKEIQKRATKVIRCFV EVNITGEESKHGFRKEDVLPFIQELADLDKIQIVGLMTMAPFGASEEVLHATFRELKELQ MTVNEKHLSFAPCTELSMGMSNDFPIAVEEGATFIRIGTALFRDA >gi|307679213|gb|GL457034.1| GENE 63 51551 - 52195 762 214 aa, chain + ## HITS:1 COG:SA1032 KEGG:ns NR:ns ## COG: SA1032 COG1799 # Protein_GI_number: 15926772 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 6 210 7 183 187 92 32.0 4e-19 MSIFNRDALSSFFGLSGEEDDYYDNYEEYEERKAVNEPPRRAARPKPQRPVQQQESYSQP AYTQQSEPVVEKPSARYRSAEAHQERDTQQAAYTENKVVSMRSSNQSATTNTRRAQESTA NAKTHKITIIEPRVYSEAMSIAKHLFAEEAVLVNFTLVEEDQARRIVDFLTGTVYALDGD IQRVGNEIFLCTPANMEVDSATAQSLANKQFFDF >gi|307679213|gb|GL457034.1| GENE 64 52410 - 52481 153 23 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVGIIVLNLAAGGLAVILRAIVY >gi|307679213|gb|GL457034.1| GENE 65 52508 - 53290 1330 260 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375583|ref|NP_814737.1| S4 domain-containing protein [Enterococcus faecalis V583] # 1 260 1 260 260 516 98 1e-145 MNANVYQHFRKDEHPFIDTVGDWLEQVEMQYAPYLTDFLDPRQAYILETLIRQNSDLSFT FYGSYEQAERKRCLIYPAYYMPQETDFGVVLFEIIYPSKFATLSHGKILGTLMNVGVRRE AFGDIISDGDKWQVFIAQEVAGFVVNQVDKIGKITVRLEERDYTQILIPKDGWQEERTTM SSLRLDSVISAVFNISRQRSKQLIESGKVKVNWTETTRPDFALDLLDIVSIRGFGRLQIQ ELEGKTKKEKFRVLLGVLRK >gi|307679213|gb|GL457034.1| GENE 66 53301 - 53390 63 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFKKTILAVHSDEVVYNKKSKIFAISGLV >gi|307679213|gb|GL457034.1| GENE 67 53442 - 54143 939 233 aa, chain + ## HITS:1 COG:SP1661 KEGG:ns NR:ns ## COG: SP1661 COG3599 # Protein_GI_number: 15901496 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division initiation protein # Organism: Streptococcus pneumoniae TIGR4 # 1 194 1 183 262 124 43.0 1e-28 MALTPLDIQNKDFSTKMRGYNQDDVDDFLDQVTRDYEDALQKNRELEKSLKHAEEKLQYF NELKDALNQSIIVAQDTADKVKSSANKESEMIITSADNQAKETLVEAERKSNAMIADAEA KSTQILAEAIERARQLAGETEDLKKKTRVFHQRLSLMLETQLEQVKSEEWEEILKPFSSY VGDKHTAVKEILDEQDLDNENETVVNSEENTDAVVEKKPVIEVTEETIEEESK >gi|307679213|gb|GL457034.1| GENE 68 54454 - 57234 3295 926 aa, chain + ## HITS:1 COG:L0350 KEGG:ns NR:ns ## COG: L0350 COG0060 # Protein_GI_number: 15673845 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Lactococcus lactis # 1 926 1 931 932 1358 68.0 0 MKMKETLQLGKTAFPMRGNLPNREAEWQKDWEEKGLYEQRQKLNEGKPTFVLHDGPPYAN GNIHLGHSLNKISKDIIIRSKSMSGFRSPYVPGWDTHGLPIEQVLTNKGVKRKEMTVAEY REKCKEYALSQVDKQRNDFKRLGVSGDWEHPYITLDPEYEAAEIRVFGKMAEKGYIYKGL KPIYWSPSSESSLAEAEIEYKDVKSPSIYVAFNVADGKGLLDNETAFVIWTTTPWTLPAN LGISVNPDFTYVEVKADGRKFVIAKDLLATVKEAVGWEEVEVLREFSGEKLDRMTAQHPF YDRTSLVMLGDHVTLDAGTGLVHTAPGHGEDDYIVSRKYDLPVISPVDSRGVFTDEAPGF EGIFYDKANPMITELLEEKGALLKLDFFTHSYPHDWRTKKPVIYRATPQWFASISKFRQD ILDEVEKVDWLIPWGKTRLYNMIRDRGDWVISRQRAWGVPLPIFYAENGEAIITPETIEH VANLFAEHGSNIWFMREAKELLPAGFTHPGSPNGEFTKETDIMDVWFDSGSSHEGVLRER EELTFPADMYLEGSDQYRGWFNSSITTSVAINGVAPYKSIISQGMVLDGEGRKMSKSLGN TILPEKVINQMGADILRLWVSSVDAEADVRVSMDILNQVSEVYRKIRNTMRFLLANTSDF NPAEHTVAYADLRSVDKYMTVRLNQVIQEIRENGYEKYNFMHIYRTVMNFLTVDLSSFYL DFAKDVVYIEAENDYQRRCMQTVFYQTLVSLTKLLTPIIPHTAEEIWSFLQEEEEYVQLA EFPGYETFTNEEELMDTWAAFMDFRDNVLKALEEARHSKLIGKSLEAKVTVYPNEQIRQL MTAVDADIAQLLIVSDFEVSKEVAPSEAVQFEDMAILVEKAEGETCDRCRSVRQDVGSDE KLPTLCGRCAHIVEENYPEAVAEGFE >gi|307679213|gb|GL457034.1| GENE 69 57286 - 58809 1815 507 aa, chain - ## HITS:1 COG:L0044 KEGG:ns NR:ns ## COG: L0044 COG0364 # Protein_GI_number: 15674202 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate 1-dehydrogenase # Organism: Lactococcus lactis # 3 507 4 503 503 667 64.0 0 MNEKVALFTIFGGTGDLAKRKLYPSLFRLYKKGLLAERFAVIGTARREWTDEYYREIVRE TIQDLNPTAEEATEFSSHFYYQSHNVNDTEHYNTLKELSDRLNEQYHLEGNHVYYLAMAP QFFGTIVNHLKSQHIISEEGFDRLIIEKPFGSDYESAYELNEEIRAAFPEQDIFRIDHYL GKEMIQNISAIRFANNIFESQWNNRYIDNVQITFAESLGVEDRGGYYDHSGALKDMVQNH ILQVVALLSMEPPVAFSEKEIRTEKVKALRAIRLYSEEEALQNFVRGQYGEGQLADQTFA AYRDEPNVAETSSTETFVAGKFLIDNFRWSGVPFYVRTGKRLTEKGTRINIVFKQVPINV FKDDTCEECDKTDLPPNVLTIYIQPTEGFSLTLNGKEIGQGFNTTPVKLDFRQSAEMTEN SPEAYEKLLLDCLNGDSTNFSHWDEVAQSWRIVDIIRHAWDKTDVSFPNYAAGTMGPQAA FDLLEKDGFTWEWQPDNWYRDRGQLDQ >gi|307679213|gb|GL457034.1| GENE 70 58809 - 59477 873 222 aa, chain - ## HITS:1 COG:SPy0450 KEGG:ns NR:ns ## COG: SPy0450 COG1321 # Protein_GI_number: 15674572 # Func_class: K Transcription # Function: Mn-dependent transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 1 215 1 215 215 158 40.0 7e-39 MTPNREDYLKLIFELGGDEVKVNNKQIVSGLDVSAASVSEMISKLVKEDLVEHSPYQGVQ LTEKGLKKASTLIRKHRIWEVFLVEHLNYTWNDVHEEAEVLEHVTSQTLVNRLADYLNHP EFCPHGGVIPEDNQPIHEEKRQTLTDYPVGTKIRIARVLDEKELLDYLVSIDLNIQEEYT IKEIAAYEGPITIYNENKELSVSFKAANTIFVEPLIRESEEN >gi|307679213|gb|GL457034.1| GENE 71 59650 - 60018 316 122 aa, chain - ## HITS:1 COG:no KEGG:EF1006 NR:ns ## KEGG: EF1006 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 122 1 122 122 243 100.0 1e-63 MKKHWTFLVGASLLTGLAGSILWKKNKQLPSPQELQHNYTGHWWFVDVKKATQHTLEITS SFNVFIDGKQTHALLVELTPKRLVILDKLGYHLIIQCENGVPATLYDEADDETYTLERAI YN >gi|307679213|gb|GL457034.1| GENE 72 60217 - 60948 687 243 aa, chain + ## HITS:1 COG:CAC0144 KEGG:ns NR:ns ## COG: CAC0144 COG1489 # Protein_GI_number: 15893439 # Func_class: R General function prediction only # Function: DNA-binding protein, stimulates sugar fermentation # Organism: Clostridium acetobutylicum # 1 230 1 226 230 194 45.0 2e-49 MKYPNVQLAYFIERPNRFIAHCRLMETNEEVITHVKNTGRGKEVFLPGAVVALSYQPSPK RKTDYDLIAVKKGSFWINIDSQVPNTLVNEALKNGQIVLPSLVGTIQTVKREQRFAHSKF DFLVETDADEQAFVEVKGMTLENKGIGAFPDAPTLRGLKHVTELMAATKAGYRCYVLFVV QFEEIKQATIHQEMQPAFAENLGAAIDQGVQVLAYNCHVTPATIELKSQVTFDLLQAFDD PNK >gi|307679213|gb|GL457034.1| GENE 73 61054 - 62052 1326 332 aa, chain + ## HITS:1 COG:lin1837 KEGG:ns NR:ns ## COG: lin1837 COG0673 # Protein_GI_number: 16800904 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Listeria innocua # 2 332 1 327 327 283 46.0 3e-76 MIHLGVIGTNWISHQFVAAALETGAYDLTAVYSRKLATAQEFGSRYGDVEYAIDLETFFG IAHMDTVYIASPNSLHFEQAKQAILAKKNVIVEKPAFSTPDEMAEIIELANKNRVYFFEA ARNIHEQSFQKIAELLPLKNQILGANFTYMKYSSRYDQVLEGKEPNIFSPHFSGGALADL GVYLVYAALGWFGVPNESHYFASKIATGVDGLGTIILRYDQFDVTLNTGKISDSFAPSEI YFENGTLILDSVNAISSAEYHDRAHEERDVLDIQVADNPMIEEARDFAAVLNNPTDKYWG TKYEEWVELARNVNKVVTDLRHSAGIIFDADK >gi|307679213|gb|GL457034.1| GENE 74 62079 - 63380 1320 433 aa, chain + ## HITS:1 COG:SPy1369 KEGG:ns NR:ns ## COG: SPy1369 COG0513 # Protein_GI_number: 15675301 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Streptococcus pyogenes M1 GAS # 4 369 2 358 361 293 43.0 4e-79 MRFLEQLPEAWQEQWQASGFNEPSTIQEKSFTPLREGENVLGISPTGTGKTLAYMLPLLL TVEKGQGNQLLIIAPSQELAMQIAEVARTWAKPLQLTVQTLIGGANVSRQIDKLKKRPEV LIGTPGRILELMKNKKVKAQLLKTIVMDEVDQLFQEEELSLTKQILTHTPTEYQLVFYSA TADRVVNQAQSLSQKLQVIDVTEEDTSAGQVAHYFIRLAPRKKADYLRRLAHTEAFRSMV FFNQVADLGAAEEKLVYENVPAIGLASDQSKQLRKLAIDQFKAERVKLLLTTDIAARGLD FTGVPYVVNVDVPLTEESYIHRSGRVGRMGAQGAVITFINDGTKRDYQRLMKQLAIPYQE IFLYDGALHEQPKAKDELEKKNVAKDTYSEKKSTKERKPETVNSVVKEPQETRKKKKNKK KNTKNKGARKAKK >gi|307679213|gb|GL457034.1| GENE 75 63425 - 66130 2845 901 aa, chain + ## HITS:1 COG:lin1832_1 KEGG:ns NR:ns ## COG: lin1832_1 COG1221 # Protein_GI_number: 16800899 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Listeria innocua # 1 434 1 432 432 476 56.0 1e-133 MKSRKEEILALLQKNETGLTAGAVAEQLMIDRSNASRYLNELFKEKKITRSTGRPVIYSV PTINEGEQVHVDESTSVSFDTLVGANDSLKVSIQQAKAAILYPPRGLHTIIFGKTGTGKS LFAECMYRFAIDSKTLDEDAPFVSFNCADYAQNPQLLFGHIFGVKKGAYTGANEDSPGLM AKADGGILFLDEIHRLPPEGQEMLFTFIDKGVYRPLGESGQTYEASVQIIGATTESSENF LTTFNRRIPMSITLPSLDARTLDERYAIISLFIQQEATRLGQQIDIEREAVLAFMLYDAE GNIGQVKRDLKLVCAKSFLYYRTHNLEHLVIRKRDLSLPVQKGLLKIKEVPERLDQFVDS KSNYLSFQPGTNKIVWSQDPARDMQVYNEIEEKVADLSEADLENVDLEELISKDMNAYFK NYVEELTQHSLHKELLPEAIWDLTNRLYDIAEERLEHTYNETARFAFALHLQSTIERVKE GHVIVHPDLNNVRKNMKKEFQVALDLSSIIEEENNIEIPFDEIGFISMFLSINVGKEERT PENNVGVFVLMHGDSTASSMLKTAQELLGTSIGTAMNMPLTMEVQTMYEQLRNQVITQKE SLNNGILLLTDMGSLNSFGNMLFEETGIRTKAITMTSTMIVLEAIRMASVGRSLEDIYQN IQLSFESVVREQFRSSLQKRQNVKKAVIVTCFTGEGVAAKLYQRILPVIDETKVELIQMQ FIERETFKKHIDNLMEEYEIKAIAGTVDVEYQNIPFFSVYDIFDDEKLNVLKRIASDEVA IDTIVHSLSGVITSVDSLQKLILMLQKTVHQIQTDMHIIVEPGVDAGIMIHLAFLVDALI KGEEARTFPNLAEYVKTHRLEIDVVRTNFMLIERAYRVTIPEAEVAHVTQMFLENEIKSK Q >gi|307679213|gb|GL457034.1| GENE 76 66359 - 66676 501 105 aa, chain + ## HITS:1 COG:lin2831 KEGG:ns NR:ns ## COG: lin2831 COG1440 # Protein_GI_number: 16801891 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIB # Organism: Listeria innocua # 4 104 2 100 101 120 68.0 5e-28 MAKKTIMLVCSAGMSTSLLVTKMQKAAEDRGMEADIFAVSASEADTNLENKEVNVLLLGP QVRFMKGQFEQKLQPKGIPLDVINMADYGMMNGEKVLDQAISLMG >gi|307679213|gb|GL457034.1| GENE 77 66818 - 68281 1733 487 aa, chain + ## HITS:1 COG:lin2856 KEGG:ns NR:ns ## COG: lin2856 COG1455 # Protein_GI_number: 16801916 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Listeria innocua # 1 478 1 445 454 450 56.0 1e-126 MNGLMAWMEKYILPTAAKIGAQKHLVALRDAFIGTLPATMAGSVAVMINAIIRDLPQEFV STYAASLEADKGIFAVLNVIIGINGFVWNGTLAIAGLIFAFSWGYNLAKAYNVNELAGGI VSLATLISGVAFAPNNTAELAVKVPEKIANAINGAEIGASIANNQLTVNPWGWLNLNHLN GNAFFTVMIMGALSTIIFCKLMQADLTIKMPDSVPPAVSKAFAAILPATIALYVVAIINF TVSKLSGGQLLIDLIQKYIAEPFLGLSQGLGAVLIVTVFVQIFWFFGIHGPNVLAPVLEG IWGQAQLINIDIFQKGYEGKTGTAAVLAAIDDGKAYMWVRGSFDAFAWFGGSGGTIVLII AILLFSKRADYLTVGKLSLGPGIFNINEPIMFGLPVVLNPIMFIPFVIAPLVATTIGWVA TYLGLVAPVSQQVAWVTPPLLLSFLATGADWRAPIVALVCMVVTFLIWTPFVIAANKMDP ALGESEQ >gi|307679213|gb|GL457034.1| GENE 78 68325 - 68543 395 72 aa, chain + ## HITS:1 COG:no KEGG:EF1014 NR:ns ## KEGG: EF1014 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 72 1 72 72 120 100.0 2e-26 MISIASAMKQEEIITLLEAYQGENETFTFKEKNGIKLFFEVEGDPETAAQVAKQLIKEQP WGGVLYFQATVV >gi|307679213|gb|GL457034.1| GENE 79 68563 - 68757 199 64 aa, chain + ## HITS:1 COG:no KEGG:EF1015 NR:ns ## KEGG: EF1015 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 64 1 64 64 112 98.0 6e-24 MIRNGLFLCSIGFLIVLYSLNPSSLNYDLLSLTTGIFFIGLGGYLFFKGKKVAEEEATKD EVKR >gi|307679213|gb|GL457034.1| GENE 80 68757 - 69167 445 136 aa, chain + ## HITS:1 COG:no KEGG:EF1016 NR:ns ## KEGG: EF1016 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 136 1 136 136 211 100.0 5e-54 MEITKTLTISADEFYTQLMNSVIFDIRKQTGKTLTRKQLRKFEYIKEYSKNSRAKIVIEE AVENKTYQFRTSTTKNDFSVRYELQPIDEKSCELRYTETMVSYGALQKLNDAVLGIFLSY FKKKQFYKMLKMMETA >gi|307679213|gb|GL457034.1| GENE 81 69509 - 69694 177 61 aa, chain + ## HITS:1 COG:lin2831 KEGG:ns NR:ns ## COG: lin2831 COG1440 # Protein_GI_number: 16801891 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIB # Organism: Listeria innocua # 5 57 48 100 101 73 67.0 9e-14 MENKEVNVLLLGPQVRFMKGQFEQKLQPKGIPLDVINMADYGMMNGEKVLDQAISLMGSS N >gi|307679213|gb|GL457034.1| GENE 82 69717 - 70037 482 106 aa, chain + ## HITS:1 COG:lin1830 KEGG:ns NR:ns ## COG: lin1830 COG1447 # Protein_GI_number: 16800897 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIA # Organism: Listeria innocua # 8 101 5 98 100 102 62.0 2e-22 MDGQQNLEAIMGLIMYGGNAKSDAMEAIAAAKSGDFELADKKIADAEESLVHAHHSQTGM LTEEAKGNNMQVTLLTVHSQDHLMTAIAFTDLAKEIIDLYRRIDNE >gi|307679213|gb|GL457034.1| GENE 83 70103 - 70573 630 156 aa, chain + ## HITS:1 COG:lin2832 KEGG:ns NR:ns ## COG: lin2832 COG1455 # Protein_GI_number: 16801892 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Listeria innocua # 1 155 1 160 435 174 56.0 7e-44 MDGFVQWMEKHFMPKASVIAAQRHLVAIRDAFVVTMPLMILGALAVLINNIPIPGYEDFL NKIFPMMYNDAPIWKSFGGNIWNGTFAIFAVLVAFLVAHNLVKSYGKDGIAAGTVSVASF FAVGGLEGMGATGLFIALIIALISGELFQRLSGNPN >gi|307679213|gb|GL457034.1| GENE 84 70582 - 71379 863 265 aa, chain + ## HITS:1 COG:lin2832 KEGG:ns NR:ns ## COG: lin2832 COG1455 # Protein_GI_number: 16801892 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Listeria innocua # 1 265 166 430 435 345 73.0 4e-95 MPDGVPPAVAKSFAALLPAMITISLFSLITSILFALGIDNIVISFYEAVQQPFMGLANSY PSALLLAFITPFLWFFGLHGANMVDPLMQTINVPAIDANIKALEAGKAIPYIVNKPFFDS FVNLGGTGATLGLLIAIFIVGRRNKPYKVITNLSLAPGLFNINEPVMFGLPIVLNPIMFI PFILVPIVLVTVAYVATATGLVPAATFMPPWVTPPIIGGFLATKSIAGGVLAAVNLLISI LIYMPFVKVATDQYLKQEAAAEAAE >gi|307679213|gb|GL457034.1| GENE 85 71463 - 72857 1859 464 aa, chain + ## HITS:1 COG:BS_ydhP KEGG:ns NR:ns ## COG: BS_ydhP COG2723 # Protein_GI_number: 16077651 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Bacillus subtilis # 2 464 6 465 465 641 65.0 0 MKYQFPENFWWGSAASGPQTEGVFEGDGKGQNIWDFWYQEAPEKFFQQVGPDKTSQFYKK YQEDIQLMKETGHNSFRTSIQWSRLIPDPTTGKVNQTAVDFYNQVIDDLLEHGIEPFMNL YHFDMPMVLQEKGGWESREVVDLYVDFAKTCFELFGDRVKKWFTHNEPIVPVEGGYLYGW HYPDKVNLKEGIQVLYHEALASAKAIAVYHSMNLSGEIGIILNLTPTYPRDEHNEADVNA AKFVDGFFNRSFLDPAVKGHFPEDMVAWAKANDLLPETTPEDLAIIAENTVDLLGVNYYQ PRRAKAKETPVETRPEGLLPEDFYDVYDMPGKKMNPYRGWEIYEKGIYDTLMNLKENYDN IHCYISENGMGVEGEERFVNEQGVIEDDYRIEFVQDHLKWVHQAIQEGSNVQGYHMWTCM DNWSWLNAYKNRYGFIAVDLDDDAKRTIKKSGRWFKEMTANNGF >gi|307679213|gb|GL457034.1| GENE 86 72915 - 74108 1265 397 aa, chain + ## HITS:1 COG:L174946 KEGG:ns NR:ns ## COG: L174946 COG4552 # Protein_GI_number: 15672154 # Func_class: R General function prediction only # Function: Predicted acetyltransferase involved in intracellular survival and related acetyltransferases # Organism: Lactococcus lactis # 15 347 9 347 350 171 35.0 3e-42 MTTKRVKKMGKEEMKEMFDLVIYAFNQEPTAERQERFEKLLSHTQSYGFLIDEQLTSQVM ATPFQVNFHGVRYPMAGIGYVASYPEYRGEGGISAIMKEMLADLAKQKVALSYLAPFSYP FYRQYGYEQTFEQAEYTIKTEDWPRVKRVPGTIKRVSWADGKEVIKDVYLENQRAHSGGV IRETWWLDYTLNRASKPNNQAIYYSSEGKAEGYVIYRIAAGTFEIVEWNYLTNTAFKALA GFIGSHSGSVQSFHWINGFAGKDLNDLMPTPAASVKILPYMMARIVELQTFLEKYPFQSG EKETYSLEIEDSYGPWNEGIWTITIDEQGKATVTKGAVEKEGTAALKADIQTWTQLFLGY RSAETLSFYERLQGDATTVQRLGQRLVKGMPILEDYF >gi|307679213|gb|GL457034.1| GENE 87 74191 - 74310 195 39 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAKTKQEKVARNNKIGQYIAIATGLYYLGKMILDRRQKK >gi|307679213|gb|GL457034.1| GENE 88 74707 - 75039 568 110 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29375603|ref|NP_814757.1| hypothetical protein EF1023 [Enterococcus faecalis V583] # 1 110 1 110 110 223 100 3e-57 MAITINIYYSGTNGGAREFAKEMIASGIVEAIRAEKGNSRYEYFFPMDDEETVLLIDSWT DQEALDKHHASPMMTRITELREKYDLHMKVERYVSDVTDPLTKDAAFIRK >gi|307679213|gb|GL457034.1| GENE 89 75153 - 77798 2816 881 aa, chain - ## HITS:1 COG:lin1981 KEGG:ns NR:ns ## COG: lin1981 COG0574 # Protein_GI_number: 16801047 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase # Organism: Listeria innocua # 1 857 1 860 879 932 55.0 0 MKKFIYSFNETHNEGKETLGGKGANLAEMTRLGLPIPQGFTITTRCCMDYLADATFFEEH LQLEILKAVKNLETETGKSFTADNEILLVSVRSGAAFSMPGMMDTILNLGLNDQRVKKFA TLTSPGFAFDCYRRLIQMFGDVVYHIPKELFDQQKERLEQELNKKITAFQEADHFALIVR YQEVFEQHQVVFPQDPVAQLFEAIKAVFDSWNNQRAVVYRNLHHIAHDLGTAVNIQEMVF GNRGLDSGTGVVFTRNPVTGENQLFGEFLLNAQGEDVVAGIRTPEPIRRLRLTMPKVYQD FRHYAELLEYHYRDMQDIEFTIENEKLYILQTRNGKRTAAATVKIALDLAKENRITKQEA LLRVTPDTIDQLIHPVFDQEKRQHMERLAMGLPASPGAASGQIVFTAEKAKELTNLGKKV ILVRQETSPEDIEGMVVSEAIVTSRGGMTSHAAVVARGMGTCCVTGCESLTVNEETKQLH CGPQVILEGTIISVDGSTGEIYLGEIPTISADNNDDLQELLSWADAYADLTVRANAETTQ DLETAIRFGAAGIGLARTEHMFFGEERVLEMRRLILAESEKEATYALEQLLHFQQEDFYQ ILKVVQDKPMVVRLLDPPMHEFLPHEKNDIQLLAKQLQRFPVTIAKQIERLQETNPMLGH RGCRLGVTQPQIYKMQVTALFTSAIRLVKEGITVYPEVMIPLIAEKEELLYLKRILKETI DGLFEEHKMTPFPYEIGTMIELPRACLIADQLAEEADFFSFGTNDLTQMTYGFSRDDIGK FINTYREKKIITQDPFQSLDQTGVGQLIQLAVEKARRTKPNMSIGVCGEVGGDPQSITFF QTLGLNYISCSPYRVPIAKLAAAQAKILTEPAVTEEQMVLL >gi|307679213|gb|GL457034.1| GENE 90 77968 - 78597 780 209 aa, chain + ## HITS:1 COG:SA1393 KEGG:ns NR:ns ## COG: SA1393 COG0517 # Protein_GI_number: 15927144 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Staphylococcus aureus N315 # 1 204 1 207 207 160 42.0 1e-39 MKLSKRQEQIIAVVKEHQPVSGERISDILAVSRATLRSDLSFLTLSGILKASPKVGYTYE SDNMEAFFFFDVFQTKVQEIMSPPLMVAQDTSIRDAITNLFMYDVGSLYVMDEAKELLGV LSRKDLLRASLNTNIDGTPVAVCMTRVPHVKTCTPEFTILEAADTLQKYEVDSLPVVEKE NPKKVIGKITKTKILTYITQQAKEAAQNR >gi|307679213|gb|GL457034.1| GENE 91 78610 - 79422 980 270 aa, chain + ## HITS:1 COG:lin1980 KEGG:ns NR:ns ## COG: lin1980 COG1806 # Protein_GI_number: 16801046 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 264 1 264 270 225 45.0 8e-59 MKKEIIVYTISDSLGETSQKLLAAASAQYPDISFLNRYNFSFVTTEEELLEILKDALKDK ALVVSTLVSKQLITAAEEFSERTGLLYLDLMAPFFELIQAKAGVDPIEEPGRRHQLDRAY FDKISAIEFAVKYDDGKNPQGFLDSDILLLGVSRTSKTPVSMYLANQGYRVSNLPLIPEV PLPPILEEMDPQKMIGLVCSPETLGQIRSSRLASLGLGNETSYTNVERIEQELAYAEEIF AKYGIPVIDVTAKSVEETAFLIKEKLDERN >gi|307679213|gb|GL457034.1| GENE 92 79493 - 82024 2399 843 aa, chain - ## HITS:1 COG:lin1803_2 KEGG:ns NR:ns ## COG: lin1803_2 COG2898 # Protein_GI_number: 16800871 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 249 837 1 585 613 488 42.0 1e-137 MKQIIHWIKTHTGLLKTLFVIAVSIIVVAQLLSIGKTISFEQLKQIFDEIPLWKLLLMMV IGLVSVTPMLNYDLTLNRILNLKVSKRELLESSWIVNTINNIGGFGGLVSMGLRSEFYGN KTEEKKILPALTHILLFVLSGLSIYSILCFFLVQFDPKMAYLQQYWIWLLGGGLYFPLLY LILHFQKNSSFGNLDAKNRLSLVVSSFLEWTGVLITFISIGYLLDVPIPLIDIVPLYVAA SIIGIASMIPGALGSFDVMMILGLSNLGVDREIIVLWLLLYRLFYYIIPFLIGCLFFTKH LSQKLDTHYRQLLKQITLEIAHKLEVVLLYFSGIMMVLLATIPEAFTQVHWLRDINPFRS HIIIQIPSIVLGFALLIMGRGIADRVKRAYYPTIILLIGAILYSFVVDFSMFSIFYLAIL LFIVIFSKSELYREQLVYSWEWMTIDGFIFGLLTLLYLVIGVYNLPNFPHHRHHFVEFFL FPSERIWLSGFIAILLVMSFNFLFVRYLQGKKHQVGEFPEDSILHNILTTYGGNIDSELV FLHDKQVFLYPKEEPTVFLQFNTINNKCVVMGNPSGNKEDFPAAIDAFLKETDRFGYVPV FYETNEDSVMLLHEYGYEFIKMGEEALVNLETFTMSGKKFKGTRAVFNKITKAGYSFDVL QPPFSAEQMHELKAISDSWLDNRKEKGFSLGFFDEAYLQRNPIAVVRNAEGEMVSFANII PSYTNEVGTIDLMRHHKEKAPSGSMDFLFIHLFEYMKTENIHYFNLGMAPLANVGQSRKS FIQERIAALIYEFGSEIYSFQGLREYKEKFASKWQPRYTLYSKSSWIVYVMIALLIVDQK NID >gi|307679213|gb|GL457034.1| GENE 93 82021 - 82755 551 244 aa, chain - ## HITS:1 COG:lin2547 KEGG:ns NR:ns ## COG: lin2547 COG0596 # Protein_GI_number: 16801609 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Listeria innocua # 10 240 5 233 239 102 28.0 6e-22 MAIEKYFQTIDGSQIFYQIFGKETNYPLVLLHGNGNDHTFFNYQISYFSKEYQVIAVDTR GHGRSTNTQSQLTFPLLAEDLAGIIQQEHLTKINLLGFSDGANIAMVFTHLYPDFVNKLV LNSGNVTMSGLKKYVTIATYFQYWFCRIGAFFSKKLRAQLPIVALLFEDTGLTKQDLEHI PCPTLVITGSRDLIALSHSRAIADAIPDGKLVLVNKQGHLFAKNSPDIFNKTIEKFLKEM KVSK >gi|307679213|gb|GL457034.1| GENE 94 82932 - 83516 552 194 aa, chain + ## HITS:1 COG:no KEGG:EF1029 NR:ns ## KEGG: EF1029 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 194 1 194 194 343 97.0 3e-93 MSLIVLIGAQAVGKMTVGKALGKQLDAKLLFNHQTIDLFANYLGYTERAFQLSDSVRKEL FHAFVENPATNTTKNIIFTVVIAFDQEQDFQFLEEISEIFLSKHEAVYFVELVSSTAIRL ERNVHPERLEAKPSKRDVDFSRKELLNTFKEHRLVSHEGELESTFPNVKITKINNSNMTP EEVATKIIATFGLT >gi|307679213|gb|GL457034.1| GENE 95 83539 - 84594 1004 351 aa, chain + ## HITS:1 COG:no KEGG:EF1030 NR:ns ## KEGG: EF1030 # Name: not_defined # Def: endonuclease/exonuclease/phosphatase family protein # Organism: E.faecalis # Pathway: not_defined # 1 351 1 351 351 664 98.0 0 MKKFFKYLGSLMVLLLSIALILIGYLTFREFRPRAVEPVAINKQFSEQTIEKQQSISLVT YNIGYAGLGQTEDFFMDGGKTVQPVNKAMVQQNLTGIEGTLKELPAMIYLFQEVDRRSQR SYEVNQEEELQKQLQLNSAFAYNFKVDYVPIPLPPIGRVESGLLTLSNEKITEAKRIALP NPFRWPVSISNLKRALLETRFPIEGTDKELVVFNLHLEAYDNGEGKIAQSKKLADVLSQE YAKGNYVIAGGDFNQVFKGSHRYPDLGEAGWAPGEIDPADLPKHFSLAYDDQQPTVRVLN KPYTGSYETSQVYVIDGFIVSDNVAVHSVKTKDEQFKYTDHQPVKMEVGLK >gi|307679213|gb|GL457034.1| GENE 96 84611 - 85288 467 225 aa, chain + ## HITS:1 COG:BH3238 KEGG:ns NR:ns ## COG: BH3238 COG0775 # Protein_GI_number: 15615800 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Bacillus halodurans # 3 205 4 218 233 94 30.0 2e-19 MKLGVIAAMDLELQKLLEYFPPQRKIQLAKNTFYIYEQKTSQVIMVCAGQGKTNATLYSQ ILIDSFQIEQLINIGICGCLNEKLQLFEMVLGEEYCHYDIRERQSINKFPYQLYYKGDKG MLAELQHLDEKIKCVRFGTGEGFVCDTTEKRNLIEQFSIDCVDMESAAIAQCCFLNDCAF VSIRIICDRADANAVKVTEDTQIQAMEKVFELVCAYINSPIVKLS Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:00:44 2011 Seq name: gi|307679212|gb|GL457035.1| Enterococcus faecalis TX2141 genomic scaffold Scfld117, whole genome shotgun sequence Length of sequence - 12961 bp Number of predicted genes - 19, with homology - 18 Number of transcription units - 10, operones - 6 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 3/0.000 - CDS 226 - 591 149 ## COG0492 Thioredoxin reductase 2 1 Op 2 . - CDS 657 - 1358 706 ## COG0492 Thioredoxin reductase 3 1 Op 3 . - CDS 1409 - 1483 98 ## 4 1 Op 4 . - CDS 1461 - 2207 228 ## COG0004 Ammonia permease - Prom 2449 - 2508 7.8 - Term 2681 - 2722 7.6 5 2 Tu 1 . - CDS 2725 - 2991 171 ## COG5341 Uncharacterized protein conserved in bacteria - Prom 3027 - 3086 11.7 6 3 Op 1 . - CDS 3181 - 3567 368 ## EF0545 hypothetical protein 7 3 Op 2 . - CDS 3580 - 3753 292 ## PROTEIN SUPPORTED gi|29375162|ref|NP_814315.1| 50S ribosomal protein L32 + Prom 3949 - 4008 10.5 8 4 Op 1 3/0.000 + CDS 4104 - 5156 302 ## COG5438 Predicted multitransmembrane protein 9 4 Op 2 . + CDS 5143 - 5907 461 ## COG5438 Predicted multitransmembrane protein - Term 6402 - 6444 6.0 10 5 Op 1 3/0.000 - CDS 6540 - 7022 409 ## COG2190 Phosphotransferase system IIA components 11 5 Op 2 3/0.000 - CDS 7033 - 8535 1491 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 12 5 Op 3 . - CDS 8528 - 9235 733 ## COG3010 Putative N-acetylmannosamine-6-phosphate epimerase - Prom 9360 - 9419 11.0 + Prom 9308 - 9367 8.7 13 6 Tu 1 . + CDS 9391 - 10209 681 ## COG1737 Transcriptional regulators - Term 10221 - 10284 14.5 14 7 Op 1 2/0.200 - CDS 10289 - 10495 166 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs 15 7 Op 2 . - CDS 10508 - 10693 96 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs - Prom 10891 - 10950 6.9 + Prom 10828 - 10887 5.1 16 8 Tu 1 . + CDS 10984 - 11409 206 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs 17 9 Tu 1 . - CDS 11455 - 12120 221 ## EF0533 hypothetical protein - Prom 12199 - 12258 5.0 18 10 Op 1 . - CDS 12265 - 12387 96 ## EF0532 hypothetical protein 19 10 Op 2 . - CDS 12417 - 12833 381 ## EF0531 hypothetical protein - Prom 12871 - 12930 8.4 Predicted protein(s) >gi|307679212|gb|GL457035.1| GENE 1 226 - 591 149 121 aa, chain - ## HITS:1 COG:SA2370 KEGG:ns NR:ns ## COG: SA2370 COG0492 # Protein_GI_number: 15928163 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Staphylococcus aureus N315 # 4 121 252 368 368 87 38.0 5e-18 MITENGKSLPVENIPILCTGFKNGTKSITASLFKYKENGEVLLNDFDESTIAKNIFLTGP NVRKGNTIFCYIYKFRQRFAVIANEIARRKHITIDEKKLSYYKNQSFYLDGCSGCEVRCS C >gi|307679212|gb|GL457035.1| GENE 2 657 - 1358 706 233 aa, chain - ## HITS:1 COG:SA2370 KEGG:ns NR:ns ## COG: SA2370 COG0492 # Protein_GI_number: 15928163 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Staphylococcus aureus N315 # 22 224 22 219 368 203 49.0 3e-52 MENKEVIIIGAGAAGVGMGVALKDFGINNFAILERKQVGNSFIKWPEETRFIAPSFTSNG FGMPDLNAIAIDTSPSYTLGKERLSGKDYAKYLQLVSEEYKLPIKTNCKVQSIKKEKTGY LLETTKGIIHAEYIIFAMGEFSFPNKSSIKGAYNNSLHYGEINSWIEIKGDKQTIIGGNE SAIDAAIELAKLGKRVTIYTDTLGLNIRDADPSKRLAPRTRQRFFDLRVNKKN >gi|307679212|gb|GL457035.1| GENE 3 1409 - 1483 98 24 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MILNVLDKKIKIIPSVYEYQNNSQ >gi|307679212|gb|GL457035.1| GENE 4 1461 - 2207 228 248 aa, chain - ## HITS:1 COG:aq_112 KEGG:ns NR:ns ## COG: aq_112 COG0004 # Protein_GI_number: 15605698 # Func_class: P Inorganic ion transport and metabolism # Function: Ammonia permease # Organism: Aquifex aeolicus # 1 206 151 353 423 114 35.0 2e-25 MLFVPLWIVFVYAPVCFSLWGHGNWLGKIGVLDYSGGLVVHTTAGIGSLVLAITSPIRLK NSLIFKSQEMIAFVGMLFITLGWFGFNMAPSGKIGEESIQIWLNTLISILGGSISWPFTQ WILIKKVSIYSIMNGIIGGLVGSTCSVGYISPAISLLISVIVCTLCPIVIHIMHLRIANF DDAADSFGMNAVGGIAGSILTGVMAEKGDFFLQLFGTFLISIWSLSLSLLIHYLLKKMVN DCDSQCIR >gi|307679212|gb|GL457035.1| GENE 5 2725 - 2991 171 88 aa, chain - ## HITS:1 COG:lin0431 KEGG:ns NR:ns ## COG: lin0431 COG5341 # Protein_GI_number: 16799508 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 84 45 131 140 65 42.0 2e-11 MVKIDGKEIERINLDNPKEFIKTFYPSKGQYNTIEVKNGHVRVKKDNSPDQIAVKTGWIS EPGQTSICIPHRFILEIVQQYSKDYYIY >gi|307679212|gb|GL457035.1| GENE 6 3181 - 3567 368 128 aa, chain - ## HITS:1 COG:no KEGG:EF0545 NR:ns ## KEGG: EF0545 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 128 1 128 128 218 100.0 7e-56 MKKMNIIYPPLVEQSFQFYQDYEQERYDKSELYRIMVMKNIINENGTPTEEALKKGLVKD FYEEYDLSFEEFLKLYPFFNNYDPDYFQKIDGFWEVPVCLKEELILLLNDKDCAYDVRIQ IQQFLEER >gi|307679212|gb|GL457035.1| GENE 7 3580 - 3753 292 57 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29375162|ref|NP_814315.1| 50S ribosomal protein L32 [Enterococcus faecalis V583] # 1 57 1 57 57 117 98 5e-26 MAVPARRTSKTKKRLRRTHEKLKSPAISFDENLGDYRKSHHVSLKGYYGGKKVMDKK >gi|307679212|gb|GL457035.1| GENE 8 4104 - 5156 302 350 aa, chain + ## HITS:1 COG:SA0428 KEGG:ns NR:ns ## COG: SA0428 COG5438 # Protein_GI_number: 15926147 # Func_class: S Function unknown # Function: Predicted multitransmembrane protein # Organism: Staphylococcus aureus N315 # 8 342 14 367 370 157 30.0 3e-38 MKKFKFTLFSLLVIIFSGLLIQRFSGYFYTTPVGIVKSVKIIDSEQLLTVKLVNNTKKTV VVKVKFNGNESTNPVFNKNNQILLDNSTKKWEFISLKRDGYTFILVVSFISLVLGIAGKK GFFSLVGILFNIIFLFFLLWINQRNRSINLLLLISIYTIIAIIISTGTLYGLKKIDLRKV LATIFSVFLSYFITTITMKLLNDQGLRYEEIQFLTRPYRTVFLASLMLGGIGAALDNVVV IISSLDELVRHTPEINTKELIESGKNIASDTTTSMINVLLFAYLSSATPFFIFYLANGWD FVETFKMHLSLEIMRVLCGGLAILFTIPSSFLFFLLFKKLKKKGKTDECN >gi|307679212|gb|GL457035.1| GENE 9 5143 - 5907 461 254 aa, chain + ## HITS:1 COG:SA0427 KEGG:ns NR:ns ## COG: SA0427 COG5438 # Protein_GI_number: 15926146 # Func_class: S Function unknown # Function: Predicted multitransmembrane protein # Organism: Staphylococcus aureus N315 # 30 248 30 248 260 91 32.0 2e-18 MNVISLLVIIFIFISIIIFKNNSFYFISGLFLNIVIFIGYLIAISLHISVYLVTFVSFLL MTIVILYWINGRNAKTKLAFICVIFFLVTFTIVSLPLITALKTQGFSSEELIELANFDLN VDIPFSELNVSIILISFSGAVIDGSMAICSSTYEIYTKNPDLTFKELFNSSFNVVIEVLN STIYTLLFAFIASNFALVIYLQDLNYSFLELINSKIFVGELLVSILTGCAGILILPLSCL LGSWILKKRFHTLY >gi|307679212|gb|GL457035.1| GENE 10 6540 - 7022 409 160 aa, chain - ## HITS:1 COG:SP0758_3 KEGG:ns NR:ns ## COG: SP0758_3 COG2190 # Protein_GI_number: 15900652 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIA components # Organism: Streptococcus pneumoniae TIGR4 # 21 144 11 134 151 121 44.0 7e-28 MFNLFKNKKQEGISITAPCSGRIIPISEVNDPIFSKKVLGEGFAVVPEGNKIYAPLTGRI EAVFPTKHAISIKSDADIEYLIHIGIDTVELEGKPFSIFVNAGEKVTTETLLAEVDFDQI KQAGKDPSVIVVFTKPEQVNEVILNSYTTIYGDSCGKIIL >gi|307679212|gb|GL457035.1| GENE 11 7033 - 8535 1491 500 aa, chain - ## HITS:1 COG:SP1684_1 KEGG:ns NR:ns ## COG: SP1684_1 COG1263 # Protein_GI_number: 15901519 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Streptococcus pneumoniae TIGR4 # 1 419 1 419 422 481 59.0 1e-135 MFKKFSQLGRAFMLPIAILPVAGLLLGLGGALTNESAMNAYPILEQPWIHTVLSIMSYAG NAVFTNLALIFAIGIAVGLANGDKGTAGLAGGVSYLVYTATISGFLALFSAKDATLDTGV VGSIVIGGTVAFLHNRYRKIELPQFLGFFGGSRFIPIISSLAAIIIGSFFYLIWPPIQNG LAVVGEHIAQMGSLGTFLYGFLLRLTGAVGLHHTIYPLFWYTSLGGTESVAGVTVSGAQN IFFAQLADPNHTGLFTYGTRFFAGRFATMMFGLPAACYAMYRAIPKQNRKKNGGLYFSGG LTSFLTGITEPVEYMFLFVAPWLYIIHAFLDGLSFYFADILNIRVGNSFSGGLIDFLLFG VLQGNDKTNWLKLIPFGIAWAIVYFCVFTFFIKKFKVAIPGMGEELPTTTENKLNKKTSL NDEAQIIIKALGSKTNIESVEACATRLRVAVVDGRMVDKETIKQLGATAVFEVNGGIQAV FGGKADLLSQEINQILEIEN >gi|307679212|gb|GL457035.1| GENE 12 8528 - 9235 733 235 aa, chain - ## HITS:1 COG:SPy0251 KEGG:ns NR:ns ## COG: SPy0251 COG3010 # Protein_GI_number: 15674432 # Func_class: G Carbohydrate transport and metabolism # Function: Putative N-acetylmannosamine-6-phosphate epimerase # Organism: Streptococcus pyogenes M1 GAS # 3 228 7 232 234 305 68.0 7e-83 MDKAKFLEAISGGLIVSCQALPGEPFYTEEGGLMSYFALAAKNAGAVGIRANSVRDIKEI KEKVSLPIIGIIKRDYPPEEPFITATMREVDELVAIGVEVIALDCTLRKRHDGLSINTFI EKVKKKYPQQLLMADISTFEEGKNAYQAGVDFVGTTLSGYTKESKKQNGPDMKLIKQLVQ ENICVIAEGKIHTPEQARQIKKLGVAGIVVGGAITRPQEITKRFVDALNKEEKDV >gi|307679212|gb|GL457035.1| GENE 13 9391 - 10209 681 272 aa, chain + ## HITS:1 COG:L192289 KEGG:ns NR:ns ## COG: L192289 COG1737 # Protein_GI_number: 15673158 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 6 272 6 273 273 270 55.0 2e-72 MNYIYLINEHYPLLTKSERKVADFILNSGESIIYSTMNDIKTKANVGDATIIRFCQKLGF SGFSDLKIEIAKEDFSKKKEKPSSGKYHDEVAKSLIEVLQSTSCLINEEKLTKAIQLINQ ASSLYIFGVGSSGNTSLDLESMFLRVGIQAKAVLDPHYQAQVASLLTDRDLVIIFSLSGK TKDTYDSLKIAKNNGAKILAITNYIHSPIGKSADLVLQTAIEEFLNGGSLAGKISQLYIC DLLVHEYEQNNKINSLDLREKVLRSIIDKRIE >gi|307679212|gb|GL457035.1| GENE 14 10289 - 10495 166 68 aa, chain - ## HITS:1 COG:pli0059 KEGG:ns NR:ns ## COG: pli0059 COG1961 # Protein_GI_number: 18450341 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Listeria innocua # 1 66 81 146 199 94 74.0 5e-20 MKNKNVRLIITSLPIMAEAVGNPLFDRFIKDLIVQILAMIAEQERTESKRRQEQGIKIAK MNGVYQWL >gi|307679212|gb|GL457035.1| GENE 15 10508 - 10693 96 61 aa, chain - ## HITS:1 COG:pli0059 KEGG:ns NR:ns ## COG: pli0059 COG1961 # Protein_GI_number: 18450341 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Listeria innocua # 1 61 15 75 199 75 68.0 3e-14 MERQIQELKKLGAKKIFVEKKSGASIEQRLIFTEAIYFVRESDIFMVEAIDRLGRNYDEI I >gi|307679212|gb|GL457035.1| GENE 16 10984 - 11409 206 141 aa, chain + ## HITS:1 COG:pli0059 KEGG:ns NR:ns ## COG: pli0059 COG1961 # Protein_GI_number: 18450341 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Listeria innocua # 1 125 22 146 199 163 73.0 1e-40 MNKFGAEKIFIEKQSGATITHRPIFQKALDFVRDQDIFIVEAIDRLGRNYDEIIDSVNYL KKKNVRLIITSLPIMAEAIGNPLLDKFIKDLIIQILAMIAEQERTESKRRQAQGIKIAKD YNITRLTIYRIKKEIHELEIN >gi|307679212|gb|GL457035.1| GENE 17 11455 - 12120 221 221 aa, chain - ## HITS:1 COG:no KEGG:EF0533 NR:ns ## KEGG: EF0533 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 221 1 221 221 387 99.0 1e-106 MLDDLPGVADNAKKILFDMRCTTVIDDCNVHLRDVLNLLEDEMHSFRLSSIEANDLDKLY DTFYYYGKKEQLIEFLLDQMTNAINFKQADKDFLIYSWLVEKLTEEQICEMLARINENTQ YHWNNNLNSFVDEFVAYYKETNGIDLRINYLGAIYTNLKILSDEYTLSISDYELIFKFFE DIIESHSETIFDFQRKYKKDIETNFGNSLENFPKLNKLLFE >gi|307679212|gb|GL457035.1| GENE 18 12265 - 12387 96 40 aa, chain - ## HITS:1 COG:no KEGG:EF0532 NR:ns ## KEGG: EF0532 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 40 1 40 40 63 97.0 3e-09 MAERLLLFLISNYQLSTTLYPVKTSYDVFHFKHFCGLVYA >gi|307679212|gb|GL457035.1| GENE 19 12417 - 12833 381 138 aa, chain - ## HITS:1 COG:no KEGG:EF0531 NR:ns ## KEGG: EF0531 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 138 1 138 138 228 100.0 6e-59 MKFYWEINPEDLLKNGNYEKNNLSECAYNLMIMYNKYAEKGKKLQQSINSKNFKKNIEQL LEIEAILSEIQFYLEEINLESADTNNVISQIETEYLVDYYYKIGNADKEGNFFASLLRNK VCKQKQLRFGIFPERVII Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:01:02 2011 Seq name: gi|307679211|gb|GL457036.1| Enterococcus faecalis TX2141 genomic scaffold Scfld118, whole genome shotgun sequence Length of sequence - 676 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + SSU_RRNA 51 - 676 100.0 # EF653454 [D:1..1526] # 16S ribosomal RNA # Enterococcus faecalis # Bacteria; Firmicutes; Lactobacillales; Enterococcaceae; Enterococcus. Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:01:05 2011 Seq name: gi|307679210|gb|GL457037.1| Enterococcus faecalis TX2141 genomic scaffold Scfld124, whole genome shotgun sequence Length of sequence - 7796 bp Number of predicted genes - 13, with homology - 12 Number of transcription units - 6, operones - 4 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 33 - 92 4.4 1 1 Op 1 . + CDS 127 - 591 501 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 2 1 Op 2 . + CDS 584 - 880 425 ## GALLO_2119 PTS system, ascorbate family, IIA component 3 1 Op 3 . + CDS 900 - 1148 155 ## COG3037 Uncharacterized protein conserved in bacteria 4 1 Op 4 . + CDS 1202 - 1525 212 ## COG3037 Uncharacterized protein conserved in bacteria 5 2 Op 1 . - CDS 1465 - 2268 459 ## COG0534 Na+-driven multidrug efflux pump 6 2 Op 2 . - CDS 2279 - 2371 58 ## - Prom 2558 - 2617 6.8 7 3 Tu 1 . + CDS 2653 - 3321 616 ## COG0588 Phosphoglycerate mutase 1 + Prom 3345 - 3404 7.3 8 4 Op 1 9/0.000 + CDS 3424 - 3690 391 ## COG3830 ACT domain-containing protein 9 4 Op 2 . + CDS 3705 - 5048 907 ## COG2848 Uncharacterized conserved protein 10 4 Op 3 . + CDS 5067 - 5579 241 ## COG0546 Predicted phosphatases + Term 5672 - 5728 13.0 - Term 5737 - 5789 15.1 11 5 Tu 1 . - CDS 5950 - 6399 499 ## CMM_2895 hypothetical protein - Prom 6428 - 6487 5.7 + Prom 6803 - 6862 3.0 12 6 Op 1 . + CDS 6890 - 7558 756 ## COG4166 ABC-type oligopeptide transport system, periplasmic component 13 6 Op 2 . + CDS 7559 - 7796 85 ## EF3081 pheromone binding protein Predicted protein(s) >gi|307679210|gb|GL457037.1| GENE 1 127 - 591 501 154 aa, chain + ## HITS:1 COG:BH0221 KEGG:ns NR:ns ## COG: BH0221 COG1762 # Protein_GI_number: 15612784 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Bacillus halodurans # 4 124 2 122 147 110 41.0 9e-25 MLSKVIKDEYIQLDVQANNFEEAIRKALQPFLEADVVIEKYVETILKIYEETGPYIVITE NIALPHATVESGAKDVAIGFMRLKTPVTSGHRTNDPVKYLFSLSAKNNQAHIELLSELAN LLGNPDFLKFIKVVSSREEFKNYIEKAEGENKHE >gi|307679210|gb|GL457037.1| GENE 2 584 - 880 425 98 aa, chain + ## HITS:1 COG:no KEGG:GALLO_2119 NR:ns ## KEGG: GALLO_2119 # Name: not_defined # Def: PTS system, ascorbate family, IIA component # Organism: S.gallolyticus # Pathway: Ascorbate and aldarate metabolism [PATH:sga00053]; Phosphotransferase system (PTS) [PATH:sga02060] # 4 89 2 87 91 127 81.0 2e-28 MNSHKALVACRAGVGSSLMLKIKVNEVVKENNFPLEVEHSSLDGVPGFQGDMIITLPDVA NELIEKNLPQKIVGIANIVDKNEIKIKLEEAFIELEKQ >gi|307679210|gb|GL457037.1| GENE 3 900 - 1148 155 82 aa, chain + ## HITS:1 COG:STM2342 KEGG:ns NR:ns ## COG: STM2342 COG3037 # Protein_GI_number: 16765669 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 75 7 81 463 65 41.0 2e-11 MDFIISFLSTPAVLLGLVAMIGLLAQKKSGTEVLTGTSKTIIGFLIFNAGGTIMTGALQN FNTLFQTGFLIKGVLLLKQRQH >gi|307679210|gb|GL457037.1| GENE 4 1202 - 1525 212 107 aa, chain + ## HITS:1 COG:STM2342 KEGG:ns NR:ns ## COG: STM2342 COG3037 # Protein_GI_number: 16765669 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 2 105 110 212 463 85 44.0 2e-17 MNLVIARITPFKNIFFTTGHSLFFACVLSLILKAHNFSDVAAIIVGGLLLGFFSAALPQL CQPFMRKITGSDATAIGHFNMVGYALSGYIGKLFSKYKDRTTEDIIG >gi|307679210|gb|GL457037.1| GENE 5 1465 - 2268 459 267 aa, chain - ## HITS:1 COG:L170983 KEGG:ns NR:ns ## COG: L170983 COG0534 # Protein_GI_number: 15672149 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Lactococcus lactis # 2 253 36 287 446 222 51.0 6e-58 MIIVGQTIGKEALAAVGATGSITFLIIGFAQGLTAGLSIITAQRFGAQDFRGVKKSFAVA IIISFTVTAILTVLSLVFLRPLLLLMQTPPDIIQQAQEFICVILGGMFASMAFNLLSNMI RALGDSRTPLFLLIFAVIINVILDLVFIINFHMGIAGAGYATVIAQISASLMCVIYIKRK IPLLQVSKSDFKIDKDTIFTHLNAGLPMAFQSSIIAIGAVVLQSALNSLGTDVVAAQAAA GRIDQFATQPMMSSVVRSLYLLNSLPI >gi|307679210|gb|GL457037.1| GENE 6 2279 - 2371 58 30 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRDLTIGTPAKLIFFIYHSITRGEYFPTVL >gi|307679210|gb|GL457037.1| GENE 7 2653 - 3321 616 222 aa, chain + ## HITS:1 COG:NMA1801 KEGG:ns NR:ns ## COG: NMA1801 COG0588 # Protein_GI_number: 15794692 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Neisseria meningitidis Z2491 # 1 222 1 227 227 241 51.0 7e-64 MDVVLMRHGESEANFENYWTGWLDVSLTEKGQEQARKAGEKIKNAQIEFDAAFTSVLKRA SLTCQIILEESDQLWIPTFKTWRLNERHYGALVGKNKDEMAREFGADQVKRWRRDYYEMP PLVEENHFDRRYAQLADQDIPHGENLQMTVQRVAPLWQDEIAPLLGSGKNVLITGHGNSL RALVKYLEDVPEDQMDTIDIPNAQPIHYRFDKNLQIVNKSIL >gi|307679210|gb|GL457037.1| GENE 8 3424 - 3690 391 88 aa, chain + ## HITS:1 COG:lin0537 KEGG:ns NR:ns ## COG: lin0537 COG3830 # Protein_GI_number: 16799612 # Func_class: T Signal transduction mechanisms # Function: ACT domain-containing protein # Organism: Listeria innocua # 1 88 1 89 89 89 64.0 1e-18 MKAILTVVGKDKVGIIAGVSQKLAELNINILDVSQTIMEDYFTMMMMLQMQPEADLEAIK QALSQVENTLSVKISIQNEEIFNAMHKL >gi|307679210|gb|GL457037.1| GENE 9 3705 - 5048 907 447 aa, chain + ## HITS:1 COG:lin0538 KEGG:ns NR:ns ## COG: lin0538 COG2848 # Protein_GI_number: 16799613 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 447 1 451 451 646 79.0 0 METKQILETIRMVEEENLDIRTITMGISLLDCIDASTEKTCQNIYNKITSKAKNLVKVGD EIASEFGIPIINKRISVTPIAIVASASGGQDCVAFARVLDKAAKAVGINFIGGYSALVEK GYQGADLSLIQSIPEALAETEFVCSSVNIGSTRAGINMDAVKLMGETIKQTAEASDMGCA KLVVFANAVEDNPFMAGAFHGVGEADCEINVGVSGPGVVKRALEKVKGESFDVVAETVKK TAFKITRMGQLVGQIASERLHVPFGIVDLSLAPTPAVGDSVALILEEMGLEAVGTHGTTA ALALLNDAVKKGGVMACNHVGGLSGAFIPVSEDAGMIKAVEEGYLNLEKLEAMTAICSVG LDMIAIPGDIPAETIAAMIADEAAIGVINHKTTAVRIIPAKDKKVGDSVEFGGLLGTAPV MRTNSAKSTDFIQRGGRIPAPIHSFKN >gi|307679210|gb|GL457037.1| GENE 10 5067 - 5579 241 170 aa, chain + ## HITS:1 COG:SP0805 KEGG:ns NR:ns ## COG: SP0805 COG0546 # Protein_GI_number: 15900698 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Streptococcus pneumoniae TIGR4 # 2 124 6 126 190 62 28.0 3e-10 MFDSYIWDFDGTLFDTYPIMLDSMMKALEDRQVVADPKAVYRLLKEKSSKALIEKYHLDF REFSDDFHQYETLDTRQPVTFDHVYDTLTQLKQQGSKHYILTHRTIASTRELLVKEGMLE FFEENARRLALIFLPPYSPQLNLMEGVWKWLKESVILTTSRKSNSRSAVS >gi|307679210|gb|GL457037.1| GENE 11 5950 - 6399 499 149 aa, chain - ## HITS:1 COG:no KEGG:CMM_2895 NR:ns ## KEGG: CMM_2895 # Name: not_defined # Def: hypothetical protein # Organism: C.michiganensis # Pathway: not_defined # 1 149 1 158 162 80 38.0 2e-14 MKLAEALLLRRDLESKLTLLREEIASSAVIQEGDTLDRSIDDLLLDYETTNQEFAQLVIA INQRNAVAKIGEQETIAAALEKREALRRSHAMLTATLEAAKVAPRMGRNEIRMIRTIDTK QITDRLNQTAKALRELDGQIQQTNWLVDL >gi|307679210|gb|GL457037.1| GENE 12 6890 - 7558 756 222 aa, chain + ## HITS:1 COG:lin0190 KEGG:ns NR:ns ## COG: lin0190 COG4166 # Protein_GI_number: 16799267 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 1 216 4 221 551 154 41.0 1e-37 MKKGLVVVGILSFLLAGCSTTGSSAKETDPEVQEISVSLPAELTTLDTTQTTDKVTFTVI QHLFEGSYRFDEKSQPVPGLAEEAVISEDGKTYTFKLKEEAKWSDGQQVQAADFAYAWKK LVDPKTMGPNAYLLDNVVNSQDIREGKADIATIGLETPDEKTFVVHLEQLQPSFLSVVSI GWLAPQRQSYVEEKGTAYGKTSEDLLYTGPFILKDWQQTGAE >gi|307679210|gb|GL457037.1| GENE 13 7559 - 7796 85 79 aa, chain + ## HITS:1 COG:no KEGG:EF3081 NR:ns ## KEGG: EF3081 # Name: not_defined # Def: pheromone binding protein # Organism: E.faecalis # Pathway: ABC transporters [PATH:efa02010] # 2 71 231 300 547 85 60.0 5e-16 MLAKNPEYYDQAVVKLDKIKGSTIKEENTGIQLFESGELDLQKISGLYVQQYQNNDSLVT QKDIANYFLDFMICQIKLE Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:01:17 2011 Seq name: gi|307679209|gb|GL457038.1| Enterococcus faecalis TX2141 genomic scaffold Scfld126, whole genome shotgun sequence Length of sequence - 511 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 6 - 510 397 ## LKI_10806 recombination protein Predicted protein(s) >gi|307679209|gb|GL457038.1| GENE 1 6 - 510 397 168 aa, chain + ## HITS:1 COG:no KEGG:LKI_10806 NR:ns ## KEGG: LKI_10806 # Name: not_defined # Def: recombination protein # Organism: L.kimchii # Pathway: not_defined # 1 165 11 178 361 173 53.0 2e-42 MKDGNLSGIQRHNQRETNNHSNPDIDIEKSHLNYDLVNPGSINYREKIKQIIESQRISKR AVRKDAVLVNEWIITSDTAFFQENTDTQAFFTDVVAYFSDRCGRQNVAYATVHLDETTPH MHLGIVPMYEGRLSSKQVFSRQNLLEIQEELPTYLQERGYAIERGLRG Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:01:22 2011 Seq name: gi|307679208|gb|GL457039.1| Enterococcus faecalis TX2141 genomic scaffold Scfld127, whole genome shotgun sequence Length of sequence - 5976 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 3, operones - 2 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 2735 2599 ## SSP0158 truncated biofilm-associated surface protein - Prom 2806 - 2865 13.6 - Term 2901 - 2941 7.5 2 2 Op 1 . - CDS 3010 - 3546 763 ## COG1302 Uncharacterized protein conserved in bacteria 3 2 Op 2 . - CDS 3575 - 3766 223 ## gi|20385132|gb|AAM21181.1|AF329367_9 6 kDa protein 4 2 Op 3 . - CDS 3783 - 4349 484 ## SDEG_1081 hypothetical protein - Prom 4384 - 4443 8.8 - Term 4378 - 4419 -0.8 5 3 Op 1 . - CDS 4481 - 4618 90 ## gi|256959493|ref|ZP_05563664.1| S41 family peptidase 6 3 Op 2 . - CDS 4619 - 5500 615 ## JDM1_1188 nisin resistance protein (putative) 7 3 Op 3 . - CDS 5578 - 5895 202 ## gi|255973607|ref|ZP_05424193.1| predicted protein Predicted protein(s) >gi|307679208|gb|GL457039.1| GENE 1 2 - 2735 2599 911 aa, chain - ## HITS:1 COG:no KEGG:SSP0158 NR:ns ## KEGG: SSP0158 # Name: not_defined # Def: truncated biofilm-associated surface protein # Organism: S.saprophyticus # Pathway: not_defined # 72 488 190 620 624 184 33.0 1e-44 MFGKNNKHMILKKGRKRVLKYSIKKLSVGVASVLVGVGLVFGATGIVNAQMGEGRLVNYS ASGNTFQENPGYTKNYNFSDLQFNPKAITGDVLQGNTIDFEVYGKHNIAASTANWEIRLQ LDERLAQYVEKIQVDPKKGVGNSRRTFVRINDSLGRPTNIWKVNYIRANDGLFAGAETTD TQTAPNGVITFEKNLDEIFKEIGADNLKSDRLMYRIYLVSHQDDDKIVPGIESAGYFLTD QDDFYNKLDVSENNSDQFKHGSVNTKYEEANIQTKDGSGSTGANGAIILDHKLTKEKNFS YSTSAKGTPWYANYKIDERLVPYVSGIQMHMVQADKVAYNVSFESGKKVADLAIERREGH ENYGMGSITDNDLTKLIDFANASPRPIVVRYVLQLTKPLDEILEEMKAADKIEENAPFGE DFIFDSWLSDTNKKLIQNTYGTGYYYLQDIDGDGNPDDKEESGDTNPYIGKPELEEVYDV DTTVKGKVFIHELAGTDHKAQLVDKEGTVLAEKTIAPNEKDGAPISDTVEFEFTGVDSSK LIAKDELKIQIVSPGFDKPEEGSTVIKESPKAVDKQTVVVGFKPDAKESIRNNKNLPEDA EYSWKKEPDTSNVTDSTKGIVTVKIGNRTFDVDVEFAVKASQAMENDATYVPITTTPETT IQSGKPTFDKPDVPLANDAFSILDVYNKDFGNASVDANTGIVTFTPAKGVGESEPITGTI PIKIVYQDGSVGTTDLAVTVSKNIYENPGENIPAGYHKVTFTAGEGTSIESGTTVFAVKD GVSLPEDKLPVLKAKDGYTDAKWPEEATQPIKADDTEFVSSATKLDDKSDADKYTPEGQK VTTELNKEPDASEGIKNKKDLPKDAKYTWKEKVDISTAGNKKGTVVVTYSDGSSDEVEVD VTVTDNRSDAD >gi|307679208|gb|GL457039.1| GENE 2 3010 - 3546 763 178 aa, chain - ## HITS:1 COG:SP1804 KEGG:ns NR:ns ## COG: SP1804 COG1302 # Protein_GI_number: 15901633 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 17 171 23 177 202 147 61.0 1e-35 MEKTKVSVKEETKKENVQGKLTYEDKVIQKIIGISLEKVEGLLTVDGGFFSNLAGKLVNT DDVTSGVVVEVGEKQVAVDLDIVAEYGKDIYKIYNEMKEIITKEVKNMTGLEVIEVNVNV VDIKTEEQHEEDSVSLKDKVGEATESVSNFASEQTEKAKELASKGSSKAKELTESRVK >gi|307679208|gb|GL457039.1| GENE 3 3575 - 3766 223 63 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|20385132|gb|AAM21181.1|AF329367_9 ## NR: gi|20385132|gb|AAM21181.1|AF329367_9 6 kDa protein [Enterococcus faecalis] EF0054 [Enterococcus faecalis] 6 kDa protein [Enterococcus faecalis] # 1 63 1 63 63 81 98.0 2e-14 MKELFLEYKYPIIGGLIGLVLALFFFTIGFFKTILLLVMVGIGVFIGSYIKNEDLFGKFF QNK >gi|307679208|gb|GL457039.1| GENE 4 3783 - 4349 484 188 aa, chain - ## HITS:1 COG:no KEGG:SDEG_1081 NR:ns ## KEGG: SDEG_1081 # Name: not_defined # Def: hypothetical protein # Organism: S.dysgalactiae # Pathway: not_defined # 1 187 1 192 193 89 29.0 1e-16 MTKGKKILFSFISLVFGTFLFAVFVHYQFMYSLPIYFIKFEEYPFIENYIQLYLYWGSVI GMVFILLFILGIVLSPAEVTSVKLNDDKGILEIKKSAIVGIVQSQLDQSNLLRDSKVNVK MYKKKIKVRITGNTSDNLDIINQTNQLVKNIELYLKTFIGLDTSIKAEVVFKNISRSGKS KQKQKRVI >gi|307679208|gb|GL457039.1| GENE 5 4481 - 4618 90 45 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256959493|ref|ZP_05563664.1| ## NR: gi|256959493|ref|ZP_05563664.1| S41 family peptidase [Enterococcus faecalis DS5] S41 family peptidase [Enterococcus faecalis DS5] # 1 45 295 339 339 81 88.0 2e-14 MFNNQPVPPDYYVDLSMLDRNTQDITQFSNTKKLFKKIKNWINSD >gi|307679208|gb|GL457039.1| GENE 6 4619 - 5500 615 293 aa, chain - ## HITS:1 COG:no KEGG:JDM1_1188 NR:ns ## KEGG: JDM1_1188 # Name: nsr # Def: nisin resistance protein (putative) # Organism: L.plantarum_JDM1 # Pathway: not_defined # 43 293 41 277 323 134 31.0 5e-30 MSIKKYLLFYIISTCAIIFVSLTFFFLPLKSIDSRSYEVLHTISQYGVITNKDEWRNILE LTRYGRKVTNVDNLNTLVYVVNKHSSVKQISSDKDMDNMETLKLPSISKYEDLTIINIPS VYSNDDNFSIKYASKLTDLIEYTSGNIVLNLSNNYGGLKEPMIIGASSLIPNGMLFSNIN NKKEKYPVYLKNGKLFGGIPGTINELNLYKLSLHKKKLGKKVAVVINNNTASAAESLLLA LKNNPNVKVFGMPSAGYTSVNLGRFFTNQNSDNYWWFVYTVGYYETIKPIKGK >gi|307679208|gb|GL457039.1| GENE 7 5578 - 5895 202 105 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|255973607|ref|ZP_05424193.1| ## NR: gi|255973607|ref|ZP_05424193.1| predicted protein [Enterococcus faecalis T2] hypothetical protein HMPREF9515_02016 [Enterococcus faecalis TX0860] predicted protein [Enterococcus faecalis T2] hypothetical protein HMPREF9515_02016 [Enterococcus faecalis TX0860] # 1 105 60 164 164 159 99.0 6e-38 MGILISEYYVMYRFFKPIALDEKQDFSSVQLFLNLFIFNALFMFVMLTNFHQVFVGKEFI IFGSLIGSLFFGSFMGGIFTICLKEQLKEYQKLMNQFTDIKKEVH Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:02:04 2011 Seq name: gi|307679207|gb|GL457040.1| Enterococcus faecalis TX2141 genomic scaffold Scfld130, whole genome shotgun sequence Length of sequence - 22567 bp Number of predicted genes - 29, with homology - 29 Number of transcription units - 10, operones - 6 average op.length - 4.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 2 - 30 -1.0 1 1 Op 1 . - CDS 48 - 284 291 ## COG5546 Small integral membrane protein 2 1 Op 2 . - CDS 281 - 499 217 ## gi|315144240|gb|EFT88256.1| hypothetical protein HMPREF9495_01920 - Term 516 - 550 4.0 3 2 Op 1 . - CDS 567 - 2060 1242 ## BAMF_0861 Phage infection protein 4 2 Op 2 4/0.000 - CDS 2060 - 4327 1404 ## COG4926 Phage-related protein 5 2 Op 3 2/0.000 - CDS 4324 - 5085 411 ## COG4722 Phage-related protein 6 2 Op 4 . - CDS 5085 - 8405 2680 ## COG5412 Phage-related protein 7 2 Op 5 . - CDS 8398 - 8970 494 ## SEQ_0179 phage GP15 protein 8 2 Op 6 . - CDS 8976 - 9395 436 ## gi|315144246|gb|EFT88262.1| conserved hypothetical protein - Term 9402 - 9435 2.0 9 3 Op 1 . - CDS 9448 - 9900 710 ## gi|315144247|gb|EFT88263.1| conserved hypothetical protein 10 3 Op 2 . - CDS 9971 - 10450 620 ## SPs0641 tail protein 11 3 Op 3 . - CDS 10450 - 10848 321 ## SEQ_0176 phage protein 12 3 Op 4 . - CDS 10848 - 11174 265 ## SPN23F_15410 hypothetical protein 13 3 Op 5 . - CDS 11174 - 11515 207 ## gi|315144251|gb|EFT88267.1| conserved hypothetical protein 14 3 Op 6 . - CDS 11509 - 11913 440 ## gi|315144252|gb|EFT88268.1| conserved hypothetical protein - Prom 11933 - 11992 3.5 - Term 11923 - 11954 1.0 15 4 Op 1 . - CDS 12011 - 12877 1068 ## EF0339 major capsid protein, putative 16 4 Op 2 . - CDS 12894 - 13448 895 ## SPH_0103 phage minor structural protein GP20 17 5 Op 1 . - CDS 13554 - 13886 487 ## lin0103 hypothetical protein 18 5 Op 2 . - CDS 13901 - 15058 1127 ## LA2_07680 minor capsid protein 19 5 Op 3 . - CDS 15058 - 16506 854 ## MGAS10270_Spy1326 minor capsid protein 20 5 Op 4 . - CDS 16573 - 17862 766 ## LM5578_2498 hypothetical protein 21 5 Op 5 . - CDS 17852 - 18685 676 ## COG3728 Phage terminase, small subunit - Prom 18891 - 18950 7.2 - TRNA 19074 - 19146 80.1 # Asn GTT 0 0 22 6 Tu 1 . + CDS 19213 - 19350 147 ## gi|222444451|ref|ZP_03606966.1| hypothetical protein METSMIALI_00062 + Term 19358 - 19395 4.0 - Term 19349 - 19380 -0.7 23 7 Tu 1 . - CDS 19386 - 19649 358 ## gi|307290096|ref|ZP_07570020.1| hypothetical protein HMPREF9509_00407 - Prom 19746 - 19805 4.3 24 8 Tu 1 . - CDS 19922 - 20338 211 ## EF2024 ArpU family transcriptional regulator - Prom 20483 - 20542 5.8 - Term 20628 - 20663 1.1 25 9 Tu 1 . - CDS 20728 - 20928 224 ## EF2829 hypothetical protein - Prom 21050 - 21109 3.1 26 10 Op 1 . - CDS 21111 - 21581 516 ## gi|315144266|gb|EFT88282.1| conserved hypothetical protein 27 10 Op 2 . - CDS 21578 - 22015 440 ## gi|315144267|gb|EFT88283.1| conserved hypothetical protein 28 10 Op 3 . - CDS 22012 - 22329 277 ## SPSINT_0566 hypothetical protein 29 10 Op 4 . - CDS 22357 - 22482 105 ## gi|315144269|gb|EFT88285.1| hypothetical protein HMPREF9495_01950 Predicted protein(s) >gi|307679207|gb|GL457040.1| GENE 1 48 - 284 291 78 aa, chain - ## HITS:1 COG:lin1702 KEGG:ns NR:ns ## COG: lin1702 COG5546 # Protein_GI_number: 16800770 # Func_class: S Function unknown # Function: Small integral membrane protein # Organism: Listeria innocua # 2 74 3 75 86 61 47.0 5e-10 MIDWKSRIKNKQFWLSLIPAVLLLIQVVAVPFGYKFQIDVINQQLLDVVNAVFVVLTILG IVTDHTTPGLSDKKETNK >gi|307679207|gb|GL457040.1| GENE 2 281 - 499 217 72 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315144240|gb|EFT88256.1| ## NR: gi|315144240|gb|EFT88256.1| hypothetical protein HMPREF9495_01920 [Enterococcus faecalis TX2141] # 1 72 1 72 72 130 100.0 3e-29 MNLTLEQWLALITFLGGIIFALMKFYHVFSQLEDSMKELKQAVDRLNNHEVRISRLEEQN KTLFRGIGGNKK >gi|307679207|gb|GL457040.1| GENE 3 567 - 2060 1242 497 aa, chain - ## HITS:1 COG:no KEGG:BAMF_0861 NR:ns ## KEGG: BAMF_0861 # Name: gp24 # Def: Phage infection protein # Organism: B.amyloliquefaciens_DSM7 # Pathway: not_defined # 1 183 1 183 428 88 32.0 9e-16 MANKILNLDFSKDPIMPPIIYGRVGDEKMQTITVKISRRDEIADLSGGIITFEGEPAGGK VKVFDSENVSSNNAGLQKGTFEYTFPSAAFSVEGTYKRAYFSFQKDGKRDTTGDFKIIVK GNADIDAGEAETIITEYNKLVKALNEAYQAALNKMNTDYDDVEKRIEAIKVDLNTLKKQI TDILVDAEGRISAIGKSVTDEVDAALEKFKEGNFYTKQEADNRFLSKTENLDIQNKKLTN DDGSGLPLPKGVTSFKELSGYAGFYYLNATVMGTMTDKADLPPEFKYSALYVYQHAIAGT AGSMYQEIRMNSLATPLIAFRTTSPNSSQNSPFKVLATTDNVYTKNESDEKYISKQEFNN GLTKAVGFGTESDYTVSSSGVVVIPITTSYIDDEIFSINSNKITVKKSGLVAINLSWLID SKSSSSSWINGELYKNSTPWARINHEVKMRQPGAISNLVLVNSGDTFHFQTNSDNSGYIV RQLRAYILFIKDINEVT >gi|307679207|gb|GL457040.1| GENE 4 2060 - 4327 1404 755 aa, chain - ## HITS:1 COG:lin2566 KEGG:ns NR:ns ## COG: lin2566 COG4926 # Protein_GI_number: 16801628 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Listeria innocua # 5 488 10 487 713 210 31.0 7e-54 MSTIILHDKKNNNWNSLGIGPLQDAINPLSTRERNGIYDMTFQYPVVGNLFHELKVGRWI VADAGPTLVAKSQRFEIAQITKPIKGIVTVYCEHYRYKLLRTMVKIGSKYSNISAQTALN QLRSQMEPKSDFTFYSDVGTTSSIDFTDPAKYKNAQEVLGGVAGSILDNFGGEYLFNNNQ VRLLAKAGTDTNVVIAYGKNLTDINQEESIENTYTSIYGWAKIGNGDDEKVITLPEIYID SDYVSNYTERRIQMVDFSDKEPKDVEALRGMVKSFIKSNNVGIPRVSIKASYVDLASSVS DEQLKSLEVVDLCDWVTVAFNQLNINTTAQIVKTVWNISLDQYESIELGEARTDFAKVIE DSKENINDLSDKIDWLEQAQKEASDIIKNPGKGHVLIYPSLADPQELLIMDTTSINTARK VWRWNVGGLGFSSTGYNGNYELAMTNNGLIVADRMATGTLRAINIIGVTITGSDITSESG YNKIIMSKGAIKNYYNNVLKSTMDANKFSIYDSREIELMQLNSDGVRFNKEGTLNKLGGL GRAFSTSLGKEEIHIYSEPGVLASVGAKKVSGNDVARHFTVFDAGVQISNLNMGGSYVGG SGEIKNSTLVNTSVSTKFTVNNNVNLGFYSNLNMNGFSILNQSDVRLKENITDTKIDGIK ETKKLNFVEFDRKQNYKSNNPIEQPSNKRELGLIAQYSPFLSVKHNEDHYLSLDMNKQVM LNSLTNKQLIEKIEQLEKKINKPNKNRRKYHRGGI >gi|307679207|gb|GL457040.1| GENE 5 4324 - 5085 411 253 aa, chain - ## HITS:1 COG:SPy0698 KEGG:ns NR:ns ## COG: SPy0698 COG4722 # Protein_GI_number: 15674760 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Streptococcus pyogenes M1 GAS # 8 206 4 194 238 67 26.0 2e-11 MDLTNYPYFQFRGKQSNEFAMRIRNEMTFTIPEAALQFTEVDGRSSDVIYDKGKYKDIEK VFPVRLYKQADTTIAAQLRDIAAWLYLSKDYAPLIFSEYSEYYYKALGYSKVDAADKTRS WLDVDFVFKCQPFVFRLDGDDERDIKSGGGIRNPEAFSSLPIITFNKTSSTQDSNIYING QQFRIAKEAGTGKITLDCEEGIAYKDGGLNITKYCFLNTDGYNPITLSPGESIINYTYIT DFKIKPKWRTLAV >gi|307679207|gb|GL457040.1| GENE 6 5085 - 8405 2680 1106 aa, chain - ## HITS:1 COG:SPy1448 KEGG:ns NR:ns ## COG: SPy1448 COG5412 # Protein_GI_number: 15675357 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Streptococcus pyogenes M1 GAS # 4 433 6 437 785 270 43.0 1e-71 MADGQVVIDVDVNGKSVAGLNSQLDQLEGSSDKAGFSIKNLAISMGLVKVASAVVGKAIS SIKTAFSTAISEGANLQQSLGGIETLFKGSADKVKKYADEAYKTSGLSANAYMENVTSFS ASLLQSVGGDTEKAADVANMAMIDMSDNANKMGTNMQDIQNAYQGFAKQNYTMLDNLKLG YGGTKEEMQRLLSDAEKLTGVKYDISNLSDVYNAIHAIQENLDITGTTAKEAAETLSGSF AAMKASLSNVLGKMALGQDIQPSLNQLAETTATFLFGNFIPMIGNILKALPRAIVTFVKA SIPHVKAAFAELLDSIGDKFPIFDKLFELISKNAQIIKFLGSVIVGAIAGFIAFKATIGI MNSVKTAINGVKTAFSLMKVAMMANPFAVVIAGIGALIAAFIYFYKTSDTFRNKVDGMVS TLKSFMKPIDQVFKGLKLLSKGFVEMLTNGPGEKIAELRSQFIKLFPESLWQGMINFTGK INDMKLGIKAIGKIMSGSIKNMSELGNFLEGAFTVKGEQNIMKIGKAIKNVIDSLKKLIN PTERVGKSFDIVGVGLKILKMVILGMMGPVGLFIKVFELLAKALGGGDVNKGIDTIMNSF KGLAEGIKTYGPQLGTNFGTALQGILGAIANALPGIITGALQVVSGFISGIAQGLPSIVV SAGELIMAFTNGIVTLLPIIAQSAVQIINALTNGILLVMPTIIESATMIITTFLGSLTEA LPKLLGAGASLINALLQGITEQLPKIVQNMATLIITWLSELNKHLPDILQAGFNLLINFL RGIANNIGKVTNEAISIIVNFVNAIGNRMGDIIDAAVNLMINFLNGLSSRMPDIIDAGVT LIVSVLQGISNNLSRIVDAGMDLVVKCIEGIGNNLYRLVNAAADLVDKLVENIINFSDRM WKAAIRLINGLAEGIDNNKEEAREAVKRLVNSLGSAIVGDELWDAGTSLMGGLLKGIKWG FEKVKGFVSGIADTIASLKGPIPYDKKVLIDNGSALMFGLEKGIIAGFDNVKHLTSNMAD SISKELSFDNAFSNFNFTSPELALNTNMMGAANLGSQIVNNSNFAKTYNPTININIEHAD LSNEKSIEETSQQLATLTERQTRGRL >gi|307679207|gb|GL457040.1| GENE 7 8398 - 8970 494 190 aa, chain - ## HITS:1 COG:no KEGG:SEQ_0179 NR:ns ## KEGG: SEQ_0179 # Name: not_defined # Def: phage GP15 protein # Organism: S.equi_equi # Pathway: not_defined # 1 190 1 192 193 125 41.0 1e-27 MRLNNPLTTSFSFLGKEFPINLAFDHVLDVFEIIQDESLILEDKIELSILILVGEVDLDI LQKFEMFKYVYDEYLLLGQHSEVETDELGNELPTKINSKDIDLVYDAKYIYASFRQIGIN LFEEQGKMSWEEFQALLESLPDNCIMQRIIQIRNWEPQKGESSKEKRRMRELKRKYALPN TDLGEEEEDG >gi|307679207|gb|GL457040.1| GENE 8 8976 - 9395 436 139 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315144246|gb|EFT88262.1| ## NR: gi|315144246|gb|EFT88262.1| conserved hypothetical protein [Enterococcus faecalis TX2141] # 1 139 1 139 139 230 100.0 3e-59 MKALEIKVERTGFPVKIAGHEFFFDCSLEHIKEYEETYDKVVQELKDLDENSEEMSDELY ISVLTKGYDSVLGEGTFAILYKDIPDIIAWLNAFYDLSVGISESIEEYTKKQTELLDERG KKSKKLKQEYLKKVSKKKG >gi|307679207|gb|GL457040.1| GENE 9 9448 - 9900 710 150 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315144247|gb|EFT88263.1| ## NR: gi|315144247|gb|EFT88263.1| conserved hypothetical protein [Enterococcus faecalis TX2141] # 1 150 1 150 150 238 100.0 9e-62 MAREYIVYKGEEVIVPASPSPLEITGIEPNTDVPSGTYKVGFADGGEKVDVPSFKTSPIA VTGLEFSPKTSTANAGTAGSRQITATVLPENATNKKVNYSITPVTEGLAVSETGYITWTE AVPAGNYVTKGETEDGKKTAQHTLTLNNQA >gi|307679207|gb|GL457040.1| GENE 10 9971 - 10450 620 159 aa, chain - ## HITS:1 COG:no KEGG:SPs0641 NR:ns ## KEGG: SPs0641 # Name: not_defined # Def: tail protein # Organism: S.pyogenes_SSI1 # Pathway: not_defined # 12 159 2 150 161 152 53.0 5e-36 MLLKMNIQMFARNKNAKRQHFIAEYVPGKETAPTTELEWKRLAKYISSIGDDTDEETDDA GFYDGDGTPETTVTSVSGAYSPEGFYDPEDPAQKLIASKKYKIGENRKIWHKIIMTNGDT YVGRATVTDIVAGAGDATEYEDFSCTITFDTLPNITPKV >gi|307679207|gb|GL457040.1| GENE 11 10450 - 10848 321 132 aa, chain - ## HITS:1 COG:no KEGG:SEQ_0176 NR:ns ## KEGG: SEQ_0176 # Name: not_defined # Def: phage protein # Organism: S.equi_equi # Pathway: not_defined # 16 125 17 126 132 74 36.0 1e-12 MDFLDCLNERINQIPNLPLNIRKGYLSALESLVIYSLPGGKVETEYYDGIKDELLNYEIA MKSKDGNKLEHTLWLLSDVLESIEELSSKDGSFECNNLMITSKPFINEADEQGWFVFLLD FQAKLTTFKEEN >gi|307679207|gb|GL457040.1| GENE 12 10848 - 11174 265 108 aa, chain - ## HITS:1 COG:no KEGG:SPN23F_15410 NR:ns ## KEGG: SPN23F_15410 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_ATCC700669 # Pathway: not_defined # 1 107 3 114 114 89 39.0 7e-17 MGIKVNLSGVRTKVSPEAMRRGRYALGNQAMADMNQFVPRKNNSLRQSAHLSSEGEKIIY GTKYAKRQFYLNGKKYTTPGTGPRWDLKAKGAYMNSWERAFLKGAGIK >gi|307679207|gb|GL457040.1| GENE 13 11174 - 11515 207 113 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315144251|gb|EFT88267.1| ## NR: gi|315144251|gb|EFT88267.1| conserved hypothetical protein [Enterococcus faecalis TX2141] # 1 113 1 113 113 211 100.0 2e-53 MLMPKPPKKFLVDSFEYKEYLGEGDWNKPVYKEPILIEYCRIDRGSQYTFSSSGKQLLYN GLIFCYHELTTPLPEFKEQSVVIYDDKEHVITKVDTVIEAYSNDVYSYEIEVV >gi|307679207|gb|GL457040.1| GENE 14 11509 - 11913 440 134 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315144252|gb|EFT88268.1| ## NR: gi|315144252|gb|EFT88268.1| conserved hypothetical protein [Enterococcus faecalis TX2141] # 1 134 1 134 134 239 100.0 3e-62 MSYIDFEEFKELTGAADEYKDNFDKYLVKATAAIDNVTNYFYQFNDITKDSRQFRVKQFK LALCAQIMYFVDVGADTYESINNAPQSFSAGRTSISNASRYNPSGNNESKSLTAEDIYLY LEGTGLLYRGVSSC >gi|307679207|gb|GL457040.1| GENE 15 12011 - 12877 1068 288 aa, chain - ## HITS:1 COG:no KEGG:EF0339 NR:ns ## KEGG: EF0339 # Name: not_defined # Def: major capsid protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 284 1 284 287 358 65.0 2e-97 MSIKYYTKQYAGILPELFAKKAVFLRAFGGTLQTKDGVSQNDTFLDLKVTDTDVVIQAYS TDENVGFGTGTGSSSRFGKRKEVKSVNKQVKYEAPLSIHEGVDQFTVNDIPDQVVAERLA LHAVAWAQHVDNLLGKALSDNASEELTTTLDEAGITKLFSNAHKKFVNNNVSQNVAWVAY VNSDVYDLLIDSKLATTSKNSSANVDEQTLYKFKGFVLEELPDEKFQPNEVAIFSADNVG VAGVGIQVARAMDSEDFAGTALQAAGKYGKYIPEKNAKAIIKGVAPKV >gi|307679207|gb|GL457040.1| GENE 16 12894 - 13448 895 184 aa, chain - ## HITS:1 COG:no KEGG:SPH_0103 NR:ns ## KEGG: SPH_0103 # Name: not_defined # Def: phage minor structural protein GP20 # Organism: S.pneumoniae_Hungary19A_6 # Pathway: not_defined # 4 183 6 185 187 78 33.0 1e-13 MKKEDLIALGIEEETAKSIMALHGKTVTQLNAQVATAESERDSAKQELEANQEELTALKE SAQGNDDLTQKLADLQTKFDEAKNNSEKQLAEQQKDFAIKLALKEANALDEEILLGQLDK DTIKVVDGNLQGFEEQLKGLQENKAFLFQTDKDPASTPQIVNPGNPKNDKGNTDVFAAAV EKYI >gi|307679207|gb|GL457040.1| GENE 17 13554 - 13886 487 110 aa, chain - ## HITS:1 COG:no KEGG:lin0103 NR:ns ## KEGG: lin0103 # Name: not_defined # Def: hypothetical protein # Organism: L.innocua # Pathway: not_defined # 24 110 1 87 87 124 78.0 9e-28 MNDDPYDYLDADYEEYLRKEGKKMNSQKFIDNCKEIVLNYANKHLDKSDRKEITEKDVFV VWSCKTLQNNKALLSTTLLDGMYYELTLNGDKQEIYFDAYKKWENKAIKV >gi|307679207|gb|GL457040.1| GENE 18 13901 - 15058 1127 385 aa, chain - ## HITS:1 COG:no KEGG:LA2_07680 NR:ns ## KEGG: LA2_07680 # Name: not_defined # Def: minor capsid protein # Organism: L.amylovorus # Pathway: not_defined # 40 369 53 383 387 209 36.0 1e-52 MITPHQLDLWSSNMSHLYQSLEGELIRIIAKRLKNGNENILDWQREKLQELHLFNKETAK VISQVTGIAESEIERMFESTGQKIVKDIDKELPYDPKPMPTDLDNIMKAYHDQVWSDINN YVNQTLLSTNFGYGTATSQMYNEIINKTVAAFNSGLFTFDEALERTIQSWAQKGIKSTFV DKGGHTWSLERYVRTVLKSTLGNTYDKLRKDRMSEYDVHTVLVTSHMGARKACSKIQGHV ADLRESVSSNEKYKSIYDPYWGAEYGTAGGHRGINCNHLHIPFIPGINTNNQPKIDAKEN EKVAELTKRQRQLERQVVKFKKNQMVSEALDHTDNAKQWKQKVRANQAKLRELVDSNEYL GRNYAREKVYTPVNTLLKDFRYDDF >gi|307679207|gb|GL457040.1| GENE 19 15058 - 16506 854 482 aa, chain - ## HITS:1 COG:no KEGG:MGAS10270_Spy1326 NR:ns ## KEGG: MGAS10270_Spy1326 # Name: not_defined # Def: minor capsid protein # Organism: S.pyogenes_MGAS10270 # Pathway: not_defined # 3 457 57 516 536 360 43.0 1e-97 MVETLNRITDHPKIGVNTAEIDRIIDNKRIYKNKFPDVSYVNSDGMRMHRAFHSLNVSKV VSRKLAKLVFNDGCAISIDNDEADQFLQSVFNDNKFRKNFGEELEAGYAIGGLVLRPYVD TKTNKIKISFCRADTFYPLQSNTNDISEAAIATITQQNEGKKNVYYTLLEFHEWENSTYY IRNELYRSEEQSQTGVRVPLPTLDKYKELKEETALVGFTRPLFVYIKLAGKNNIDIDSPL SLGIIDNAKRQLIDINEKYDEFMNEVEEARRKILASDHFFKVRYDEKGNPIKRFDSKTSV YQRLKSDDPFISEFVPTLRSQEFIETINFILRIVELQTGFSSGTFSFDGQSVKTATEIIS ENSETFSTRSDNVLIVEEALKELITTIFELAAAFNLFKYSKELGINIDFDDGVFQSQDAK ADYYSKLVTAGLSSKLSAIQKLTGVTEKEAKKIVYEIRAETLEMDYPEQERISAENELGD EE >gi|307679207|gb|GL457040.1| GENE 20 16573 - 17862 766 429 aa, chain - ## HITS:1 COG:no KEGG:LM5578_2498 NR:ns ## KEGG: LM5578_2498 # Name: not_defined # Def: hypothetical protein # Organism: L.monocytogenes_08-5578 # Pathway: not_defined # 5 427 9 436 439 514 58.0 1e-144 MAINFSDKQVANINYDTSKVTFELNEGTPRSGKTTSDIFKMADFYLRSPDQNHLVTAYNQ EQAFRMFMDGDGLGLMHIFDGVSDIRHDEHGDHLLLYAPNGEKKIYYKGGGKINSVGAIT GMSLGSVTFLEFNLLHKDFINECFRRTFAAEWRYHLGEQNPPAPNHPNLELLERFEKSGR FLFRHWTPDDNPILSESRKQQLYDELSSSEYLLERDWYGHRVLPQGVIYSMFGKNNKATE IKGNIIETFFTADGGQADATTCAFWVVTFYAGKFYLYRLANYYHSGTDTGETKAMSIYAK EIKQFVEWCYTKWNHLPHWNYFFVDPACKTLRSELDLIGIITDKADNNSSDKVSSNGLKI EVGIERLQNTMISGQFIVLECGEEFDHYNFEKEISMYVRNDNGLPVDKYNHALDEARYGN NYFYKTYIA >gi|307679207|gb|GL457040.1| GENE 21 17852 - 18685 676 277 aa, chain - ## HITS:1 COG:BS_xtmA KEGG:ns NR:ns ## COG: BS_xtmA COG3728 # Protein_GI_number: 16078322 # Func_class: L Replication, recombination and repair # Function: Phage terminase, small subunit # Organism: Bacillus subtilis # 8 271 13 263 265 114 34.0 2e-25 MQKWDLAYENYKNGMKYKDIADKYDVSINTVKSWKSRKWNAPPKEVATKKKKVAHKKESQ PVIENDALTEQQKMFCLFYLQHFNATKAYQQAYGCGYNSARANSIRLLAKDRIKKELHRL KAELQQDVFVDIKDLIQEYVKQAFADITDFTEFGYDEYPFKDINGEEVIDEETGEVKTYK VSNVSLKDSNEVDGTLIQEVKKGKDGVSVKLYDKQKAMSELMKYIATDELKQAQTEKAQA EAKILTNKADKLTAGGKANELLEALLEVKSRGVSDGN >gi|307679207|gb|GL457040.1| GENE 22 19213 - 19350 147 45 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|222444451|ref|ZP_03606966.1| ## NR: gi|222444451|ref|ZP_03606966.1| hypothetical protein METSMIALI_00062 [Methanobrevibacter smithii DSM 2375] hypothetical protein METSMIALI_00062 [Methanobrevibacter smithii DSM 2375] # 2 45 693 736 741 65 47.0 1e-09 MTYSTGEKPGKGTYTCTNCGQQVVLDDKTDTLPPCPRCDNTKYRK >gi|307679207|gb|GL457040.1| GENE 23 19386 - 19649 358 87 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|307290096|ref|ZP_07570020.1| ## NR: gi|307290096|ref|ZP_07570020.1| hypothetical protein HMPREF9509_00407 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9509_00407 [Enterococcus faecalis TX0411] conserved hypothetical protein [Enterococcus faecalis TX2141] # 1 87 23 109 109 170 100.0 4e-41 MLLQIDKFNKKELEGKEAAKLLVDYIGGVSGTSCDSDAVKVFNNSNPIVITFGKEQTTAI NLPYYEDFKIVAVWLLNDEGKTLRKLI >gi|307679207|gb|GL457040.1| GENE 24 19922 - 20338 211 138 aa, chain - ## HITS:1 COG:no KEGG:EF2024 NR:ns ## KEGG: EF2024 # Name: not_defined # Def: ArpU family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 138 1 138 138 237 96.0 1e-61 MIQLLKEVDFRQTKANARNVLKNFRRLERIAGRSLIDLKSPIITDMPKSQSHGNKAEDAL VQLADAEAERDAILSGLMALSLTSRQILHYSFCVQDHYSNYKIAREVGYSERSIQRMKSE ALIEFAEAYRNGKIIAYK >gi|307679207|gb|GL457040.1| GENE 25 20728 - 20928 224 66 aa, chain - ## HITS:1 COG:no KEGG:EF2829 NR:ns ## KEGG: EF2829 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 66 1 66 77 124 87.0 1e-27 MSYPEVFILGRQVDGVYVEYLHGAEKADLFFDYTIARDERNHMNKTNTKDGEWRILKYGR PITLEF >gi|307679207|gb|GL457040.1| GENE 26 21111 - 21581 516 156 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315144266|gb|EFT88282.1| ## NR: gi|315144266|gb|EFT88282.1| conserved hypothetical protein [Enterococcus faecalis TX2141] # 1 156 1 156 156 291 100.0 1e-77 MNKKELISILEGLEGDSFIEKYNEGYDQAVRECLIAAKQLDEPKKVVVPPIIDKFIRENE DPIYEICAWSDHYSSDGRTCEDSKLSAVINWYGKNSNEFYRAVINGYEVKEETLYYVELP EIGYLNNEDGGIKHTEQEIKAIDERYLAFAVKVDGE >gi|307679207|gb|GL457040.1| GENE 27 21578 - 22015 440 145 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315144267|gb|EFT88283.1| ## NR: gi|315144267|gb|EFT88283.1| conserved hypothetical protein [Enterococcus faecalis TX2141] # 1 145 1 145 145 263 100.0 3e-69 MSTKMSTLFHEFVYDNELNGIDEIIREANAVVAEDDIEVGTMLDDQVGEKYFYKCMELAE NVIKSFEDEQLKLNENQQIVLDWLKESCKLNGLRTVIEIMGFLSTTGGKMKYKQVAYAYG DLNDDKLKQVLQAFSQWAIEQEGQR >gi|307679207|gb|GL457040.1| GENE 28 22012 - 22329 277 105 aa, chain - ## HITS:1 COG:no KEGG:SPSINT_0566 NR:ns ## KEGG: SPSINT_0566 # Name: not_defined # Def: hypothetical protein # Organism: S.pseudintermedius # Pathway: not_defined # 21 102 32 113 116 68 48.0 1e-10 MDVKTIDLEKDGSIGCIVDYNGINLDVSECVLMQSTCVKDKNGVEIFEGDIGWDDHQEVH GQVIFENGAFKYEWDNISEDLFEATDDIEIVGNIYENSELLEGTE >gi|307679207|gb|GL457040.1| GENE 29 22357 - 22482 105 41 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315144269|gb|EFT88285.1| ## NR: gi|315144269|gb|EFT88285.1| hypothetical protein HMPREF9495_01950 [Enterococcus faecalis TX2141] # 1 41 29 69 69 70 100.0 3e-11 MPRTEYKNYGNHIWNVQDKVRFQEYLSKQESKASEEDDSKV Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:04:10 2011 Seq name: gi|307679206|gb|GL457041.1| Enterococcus faecalis TX2141 genomic scaffold Scfld138, whole genome shotgun sequence Length of sequence - 9101 bp Number of predicted genes - 11, with homology - 11 Number of transcription units - 7, operones - 3 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 65 - 109 11.7 1 1 Tu 1 . - CDS 152 - 1093 1015 ## COG2267 Lysophospholipase - Prom 1154 - 1213 7.8 + Prom 1123 - 1182 7.2 2 2 Tu 1 . + CDS 1275 - 1553 188 ## gi|229546320|ref|ZP_04435045.1| hypothetical protein HMPREF0349_1537 + Term 1572 - 1609 6.1 - Term 1498 - 1536 0.3 3 3 Op 1 2/0.000 - CDS 1669 - 1908 67 ## COG3464 Transposase and inactivated derivatives 4 3 Op 2 . - CDS 2023 - 2457 251 ## COG3464 Transposase and inactivated derivatives - Prom 2636 - 2695 5.8 + Prom 3176 - 3235 5.5 5 4 Op 1 . + CDS 3312 - 3887 549 ## COG1309 Transcriptional regulator 6 4 Op 2 . + CDS 3961 - 4125 113 ## gi|256854634|ref|ZP_05559998.1| conserved hypothetical protein 7 4 Op 3 . + CDS 4152 - 4775 460 ## LACR_C36 amidase + Prom 4825 - 4884 2.2 8 5 Tu 1 . + CDS 4913 - 6262 392 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 9 6 Op 1 23/0.000 + CDS 6645 - 7202 482 ## COG2963 Transposase and inactivated derivatives 10 6 Op 2 . + CDS 7199 - 8017 305 ## COG2801 Transposase and inactivated derivatives - Term 8143 - 8199 11.1 11 7 Tu 1 . - CDS 8312 - 8908 554 ## LCK_p400006 RepB-like protein - Prom 8934 - 8993 5.0 Predicted protein(s) >gi|307679206|gb|GL457041.1| GENE 1 152 - 1093 1015 313 aa, chain - ## HITS:1 COG:lin1226 KEGG:ns NR:ns ## COG: lin1226 COG2267 # Protein_GI_number: 16800295 # Func_class: I Lipid transport and metabolism # Function: Lysophospholipase # Organism: Listeria innocua # 21 288 19 284 306 146 34.0 6e-35 MAIHEVEFKSFNEIETVKGWIYTPIREPIGVVQIVHGYGEHSRRYLHMILTLNEAGFVVA ADDHVGHGKTAYDSDNWSNWGDKGYMTMAEDEQKLRELIKEDYGDLPYFMFGHSMGSMIA RLYATKYGEELDGLILCGTSEIFPEMENIVSELKAEIDAGNGEQVDPDYQNRMFEWMTER IENPNTPNDWISKDPDIVADHANDPFNNFTPVPNIQSLYQFAQMIQQILGTEWSEKVPTD IPIYNIAGDEDPVGRYGEGVYAVSNWLLETGHQVKTKLYSGYRHEIHNHREIRDEVVAGI IDFITEHARVKAN >gi|307679206|gb|GL457041.1| GENE 2 1275 - 1553 188 92 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229546320|ref|ZP_04435045.1| ## NR: gi|229546320|ref|ZP_04435045.1| hypothetical protein HMPREF0349_1537 [Enterococcus faecalis TX1322] hypothetical protein HMPREF0345_0637 [Enterococcus faecalis ATCC 29200] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] conserved domain protein [Enterococcus faecalis TX0411] hypothetical protein HMPREF0345_0637 [Enterococcus faecalis ATCC 29200] hypothetical protein HMPREF0349_1537 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] conserved domain protein [Enterococcus faecalis TX0411] conserved domain protein [Enterococcus faecalis TX4000] conserved domain protein [Enterococcus faecalis TX2141] conserved domain protein [Enterococcus faecalis TX0043] conserved domain protein [Enterococcus faecalis TX0312] putative lipoprotein [Enterococcus faecalis 62] # 1 92 22 113 113 132 98.0 6e-30 MNEEKNQYKIKMIFISLLTVAVLAGCSETAEETPQTNSPDETTAVTKSTSDTSDSETATE EDLSESEAESPNEKYKELTIQDYFNLEGLFVK >gi|307679206|gb|GL457041.1| GENE 3 1669 - 1908 67 79 aa, chain - ## HITS:1 COG:FN0599 KEGG:ns NR:ns ## COG: FN0599 COG3464 # Protein_GI_number: 19703934 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 1 57 363 419 428 64 50.0 6e-11 MRTVLQTLEKYINPIQNAFKYTLSNGPIEGVNNKVKNIKRSGYGYRNFYHLRSRVLISFT LTREAITEKPLYFKEDAAH >gi|307679206|gb|GL457041.1| GENE 4 2023 - 2457 251 144 aa, chain - ## HITS:1 COG:SA0369 KEGG:ns NR:ns ## COG: SA0369 COG3464 # Protein_GI_number: 15926085 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 1 120 178 297 439 119 49.0 1e-27 MSFIFMNAVNHEVIDIVENRQQHYLSDYFMRYSLNARLRVKTVTMDMYSPYIGLIKACFP KADIIIDRFHIVQHLNRALNHVRIQTMNSLRYTRPRDYRKLKKQWKLVLKNEADLNFHDF FTHRLYTGMVSEYVMANYLVELSP >gi|307679206|gb|GL457041.1| GENE 5 3312 - 3887 549 191 aa, chain + ## HITS:1 COG:mlr8177 KEGG:ns NR:ns ## COG: mlr8177 COG1309 # Protein_GI_number: 13476759 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Mesorhizobium loti # 5 184 16 198 225 67 24.0 1e-11 MRNTKEKILTATEQLIYKKGYTGTSINDILDETATGKGQFYYYFDSKKEASLAVIDNHVK IWQKHLLNGILSRDESPLANLKEMLDWIYSDHAQKKIYYGCPVGNLVIELSALDEDFRKP LEQLFSDLQKKIAENLSALTGLLVKQNLPAAHAIIAQIQGSLLLLKVTQDLNVLESNFDL LKTSFEKVGEK >gi|307679206|gb|GL457041.1| GENE 6 3961 - 4125 113 54 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|256854634|ref|ZP_05559998.1| ## NR: gi|256854634|ref|ZP_05559998.1| conserved hypothetical protein [Enterococcus faecalis T8] conserved hypothetical protein [Enterococcus faecalis T8] # 1 54 3 56 56 90 100.0 4e-17 MSAVESKEKVKILQADAIRREYPIAIVQKRWQSCQTFIDVLGKGILKQLITELS >gi|307679206|gb|GL457041.1| GENE 7 4152 - 4775 460 207 aa, chain + ## HITS:1 COG:no KEGG:LACR_C36 NR:ns ## KEGG: LACR_C36 # Name: not_defined # Def: amidase # Organism: L.lactis_SK11 # Pathway: not_defined # 1 207 1 207 207 416 100.0 1e-115 MFNNKNTAFVVTDPQVEFLKPKGAGYGLTKDILRKYHTTENLTELFKHAKAKGYKIFISP HYFYDHDQNWKFGGQGEQMMLNNKMFHREHQYQETVKGSGADFVEELKPYLDENTIITSP HKIFGPESNDLALQLRKNGIDTVILAGMNANLCVDSHLRELVESGFHVHVAADATGAPGQ EAYDAAITNFGFVADRTMSTAKVLEEL >gi|307679206|gb|GL457041.1| GENE 8 4913 - 6262 392 449 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 1 444 1 450 458 155 26 1e-37 MKKIDVKNIVVGFGKGGKTLAKFLAGKGESVVVIEQSPRMYGGTCINIGCIPSKFLIVNG EKGLKFTEAAEKKAMLTGNLNLKNYHMIADEATAEVIDGKAKFVSDHEIEVMDAEGEVIA QLIGERIFINTGATPVLPPIPGLVDSRNVVTSTELMDLKQLPEHLTIIGSGYIGLEFASM FASYGSKVTVLDIFDNFLPRDDEDISKLVRSDLESRGIIFKLGVKIVAITDNSVEIINKE GKKVSILSDKILVATGRKPNTAGLGLENTNIQLGQRGEIVVNDKLETTVQNVWALGDVHG GLQFTYTSLDDFRIVSNNLYGDGKRSLSDRKNVPTSVFITPALSKVGLNEKDAKAAGIDY RLFKLAATAIPKSAVLNQSKGLLKALVDPETDKILGITIYAEESYETINLISLAIEVGLP YTLLRDKIYTHPTMTEALNDLFAAKNEIK >gi|307679206|gb|GL457041.1| GENE 9 6645 - 7202 482 185 aa, chain + ## HITS:1 COG:L28615 KEGG:ns NR:ns ## COG: L28615 COG2963 # Protein_GI_number: 15672622 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 185 1 185 185 318 98.0 4e-87 MVKYSIELKQRVIQDYLSGKGGSTYLAKLHNVGSSSQVRRWIRNYRAEGLPTAHSKVNKN YSMELKENAVQCYLTTDLTYEAVARKFEITNFTLLASWVNHFKIYGEVPISKKRGRRKKL ESIASSMTQNPNDSQRIKELEQELRYAQIEVAYLKGLRRLEKNALMNKNQDSSTVSVKPS KSKKS >gi|307679206|gb|GL457041.1| GENE 10 7199 - 8017 305 272 aa, chain + ## HITS:1 COG:L0470 KEGG:ns NR:ns ## COG: L0470 COG2801 # Protein_GI_number: 15672806 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 272 1 272 272 513 99.0 1e-145 MKVTGFPKATYYYWVNCFERVNKDELIEKEMLKIRQEHANAGYRPMSELLKQRGYHVNHK KVQRLMKKLGLRVTSYWHKSRKYNSYKGKVGTVAKNKLHRRFRTSIPHQKITTDTTEFKY YEDGIQKKCYLNPYIDLFNSEVISYHISKQPSYQSIDIALNQALAVTSDCPYRRTFHSDQ GWGYQMRDYVSKLKSHRIFQSMSRKGNCHDNSVMENFFGLLKQEIYYGHIFSSFEELEQV IVIWIRYYNTKRIKQKLNWMSPIQFRLNYQNN >gi|307679206|gb|GL457041.1| GENE 11 8312 - 8908 554 198 aa, chain - ## HITS:1 COG:no KEGG:LCK_p400006 NR:ns ## KEGG: LCK_p400006 # Name: not_defined # Def: RepB-like protein # Organism: L.citreum # Pathway: not_defined # 1 166 1 166 188 140 72.0 3e-32 MSEELKTIKELADELGVSKQAIQYHIKSLTNKNRQTNDKGVTVLSAIEQEFIRGKVDKQT NKNKTNEPTKKRQTDKQKEPNINQYLLIEIEEVKKNRDKQLAVKDKQIENKDIQIAQMQN LLDQQQRLALQDKKLLEEYKAENDSLKALKMPTEDTKENQSQEEVQTLKKQMEALNDKIK GQEQANNQSSKKWYQFWK Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:04:30 2011 Seq name: gi|307679205|gb|GL457042.1| Enterococcus faecalis TX2141 genomic scaffold Scfld140, whole genome shotgun sequence Length of sequence - 1617 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 2/0.000 - CDS 54 - 998 391 ## COG0582 Integrase 2 1 Op 2 . - CDS 995 - 1615 269 ## COG0286 Type I restriction-modification system methyltransferase subunit Predicted protein(s) >gi|307679205|gb|GL457042.1| GENE 1 54 - 998 391 314 aa, chain - ## HITS:1 COG:lin2409 KEGG:ns NR:ns ## COG: lin2409 COG0582 # Protein_GI_number: 16801471 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Listeria innocua # 1 314 1 314 314 378 58.0 1e-105 MSKRPRLFAGYFLEWIETYKVGAIRDISVSKYYIAHKHLTEICPDLTIDKLDRKAYQSIL NEYALTHERQTTMDFHHQIGSCVRDMYHEGLIKRDPTYKAIIKGIPPRPKKKKFLQKGEL QKLLRSLELGEGINMDWFILLVAKTGMRFAEAIALTPADFDWTRNTVSINKTLNYKNSTM FFQDTKNKSSVRTISIDWQIVGQFKPLIENLPQDELIFVNRDEKTGKYKRIFNSTYNSHL IRKCKESGITVITMHGLRHTHASILLADGVSTHSIAKRLGHSSVTTTQETYMHIIDELQS KDDEKILGALMQLS >gi|307679205|gb|GL457042.1| GENE 2 995 - 1615 269 206 aa, chain - ## HITS:1 COG:SPy0676 KEGG:ns NR:ns ## COG: SPy0676 COG0286 # Protein_GI_number: 15674741 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Streptococcus pyogenes M1 GAS # 1 200 11 208 211 232 53.0 3e-61 LGVDDAYKAPEALMNILLSRDKREIVFNKFLEIEKDLTFDWFHEYFQDEHADRKVKKQDF TPNSIGEVIAKIVGPGSGLTHEVASGTGGMIIQKWRADRLSIGFFEYKPSMTFYDLEELS DRTIPFLLFNLAIRGMNATVVHGDSLDRKIKQIYFLQNSKDDSLAFSDVNVMPHSDVVTR EFQVREWLEEAINHIESPSVLGGENE Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:05:05 2011 Seq name: gi|307679204|gb|GL457043.1| Enterococcus faecalis TX2141 genomic scaffold Scfld142, whole genome shotgun sequence Length of sequence - 119011 bp Number of predicted genes - 114, with homology - 110 Number of transcription units - 55, operones - 29 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 1960 1854 ## EF3250 hypothetical protein + Term 1964 - 2021 14.7 - Term 2042 - 2079 1.0 2 2 Tu 1 . - CDS 2155 - 2298 196 ## EF3249 hypothetical protein - Prom 2347 - 2406 9.0 - Term 2419 - 2457 5.0 3 3 Tu 1 . - CDS 2529 - 2633 156 ## - Prom 2786 - 2845 9.7 - Term 2956 - 2996 9.6 4 4 Tu 1 . - CDS 3007 - 4623 1384 ## COG1316 Transcriptional regulator - Prom 4643 - 4702 2.0 + Prom 5118 - 5177 7.5 5 5 Tu 1 . + CDS 5309 - 5947 610 ## COG3397 Uncharacterized protein conserved in bacteria + Term 6098 - 6131 -0.9 - Term 6141 - 6186 14.1 6 6 Tu 1 . - CDS 6211 - 7203 1057 ## COG0340 Biotin-(acetyl-CoA carboxylase) ligase - Prom 7223 - 7282 7.3 + Prom 7176 - 7235 7.0 7 7 Tu 1 . + CDS 7342 - 7557 312 ## COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain + Term 7565 - 7598 3.1 + Prom 7612 - 7671 2.5 8 8 Op 1 . + CDS 7749 - 7916 76 ## gi|315144220|gb|EFT88236.1| conserved domain protein 9 8 Op 2 . + CDS 7971 - 8201 299 ## gi|307288305|ref|ZP_07568301.1| toxin-antitoxin system, antitoxin component, AbrB domain protein 10 8 Op 3 . + CDS 8201 - 8542 292 ## COG2337 Growth inhibitor + Term 8555 - 8587 2.5 + Prom 8794 - 8853 9.8 11 9 Op 1 58/0.000 + CDS 8913 - 12527 849 ## PROTEIN SUPPORTED gi|163796927|ref|ZP_02190884.1| 30S ribosomal protein S12 12 9 Op 2 . + CDS 12694 - 16347 4294 ## COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit - Term 16344 - 16383 9.1 13 10 Tu 1 . - CDS 16415 - 17107 246 ## COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases - Prom 17177 - 17236 7.3 + Prom 17136 - 17195 7.4 14 11 Op 1 . + CDS 17216 - 18736 1750 ## COG1070 Sugar (pentulose and hexulose) kinases 15 11 Op 2 . + CDS 18820 - 19539 589 ## EF3234 putative lipoprotein + Prom 19556 - 19615 5.9 16 12 Tu 1 . + CDS 19667 - 20134 562 ## COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) + Term 20153 - 20188 4.0 + Prom 20163 - 20222 4.3 17 13 Op 1 59/0.000 + CDS 20254 - 20799 930 ## PROTEIN SUPPORTED gi|227517177|ref|ZP_03947226.1| ribosomal protein L13 18 13 Op 2 . + CDS 20813 - 21205 653 ## PROTEIN SUPPORTED gi|29377675|ref|NP_816829.1| 30S ribosomal protein S9 + Term 21231 - 21269 2.1 19 14 Tu 1 . + CDS 22199 - 23368 479 ## gi|315144162|gb|EFT88178.1| hypothetical protein HMPREF9495_01983 + Term 23427 - 23466 8.1 - Term 23463 - 23507 13.1 20 15 Op 1 . - CDS 23560 - 26079 1896 ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain 21 15 Op 2 13/0.000 - CDS 26227 - 27054 978 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 22 15 Op 3 13/0.000 - CDS 27051 - 27866 961 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 23 15 Op 4 9/0.000 - CDS 27883 - 28374 752 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 24 15 Op 5 . - CDS 28387 - 28806 612 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA - Prom 28864 - 28923 6.2 + Prom 28872 - 28931 4.0 25 16 Op 1 45/0.000 + CDS 29064 - 29999 963 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 26 16 Op 2 . + CDS 29992 - 30762 763 ## COG0842 ABC-type multidrug transport system, permease component + Prom 30820 - 30879 7.6 27 17 Tu 1 . + CDS 30950 - 31924 1154 ## COG0042 tRNA-dihydrouridine synthase + Term 32142 - 32179 -0.9 - Term 32016 - 32069 6.8 28 18 Op 1 . - CDS 32124 - 33659 1377 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin 29 18 Op 2 . - CDS 33680 - 33802 166 ## 30 18 Op 3 . - CDS 33837 - 34811 1037 ## COG0523 Putative GTPases (G3E family) 31 18 Op 4 . - CDS 34827 - 34976 247 ## PROTEIN SUPPORTED gi|29377651|ref|NP_816805.1| 50S ribosomal protein L33 - Prom 35009 - 35068 2.5 - Term 35014 - 35043 0.4 32 19 Tu 1 . - CDS 35087 - 35356 457 ## PROTEIN SUPPORTED gi|29377650|ref|NP_816804.1| 30S ribosomal protein S14 - Prom 35531 - 35590 5.3 + Prom 35435 - 35494 5.7 33 20 Tu 1 . + CDS 35563 - 35955 276 ## COG1765 Predicted redox protein, regulator of disulfide bond formation + Term 36091 - 36160 4.1 + Prom 36208 - 36267 6.5 34 21 Op 1 32/0.000 + CDS 36317 - 37039 367 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 35 21 Op 2 22/0.000 + CDS 37036 - 37707 736 ## COG2011 ABC-type metal ion transport system, permease component 36 21 Op 3 . + CDS 37720 - 38538 1140 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen + Term 38545 - 38596 9.2 + Prom 38551 - 38610 7.9 37 22 Op 1 9/0.000 + CDS 38630 - 40399 1841 ## COG3275 Putative regulator of cell autolysis 38 22 Op 2 2/0.118 + CDS 40380 - 41108 726 ## COG3279 Response regulator of the LytR/AlgR family + Term 41113 - 41161 13.4 + Prom 41170 - 41229 8.0 39 23 Op 1 23/0.000 + CDS 41260 - 41679 489 ## COG1380 Putative effector of murein hydrolase LrgA 40 23 Op 2 . + CDS 41676 - 42359 1095 ## COG1346 Putative effector of murein hydrolase + Term 42364 - 42390 -1.0 - Term 42470 - 42508 7.1 41 24 Tu 1 . - CDS 42565 - 43110 652 ## COG1335 Amidases related to nicotinamidase - Prom 43139 - 43198 7.8 + Prom 43193 - 43252 5.9 42 25 Tu 1 . + CDS 43276 - 44289 815 ## COG0657 Esterase/lipase + Term 44291 - 44334 12.6 + Prom 44534 - 44593 8.7 43 26 Op 1 . + CDS 44664 - 49514 4970 ## EF3188 hypothetical protein 44 26 Op 2 . + CDS 49534 - 49923 202 ## EF3187 cell wall surface anchor family protein 45 26 Op 3 . + CDS 49880 - 50614 1081 ## EF3186 hypothetical protein 46 26 Op 4 . + CDS 50619 - 51419 941 ## EF3185 hypothetical protein 47 26 Op 5 . + CDS 51420 - 52178 1103 ## EF3184 hypothetical protein + Term 52199 - 52252 9.4 + Prom 52205 - 52264 4.5 48 27 Tu 1 . + CDS 52290 - 53366 1145 ## EF3183 cell wall surface anchor family protein, putative + Term 53395 - 53440 11.8 + Prom 53374 - 53433 2.1 49 28 Op 1 . + CDS 53468 - 53953 512 ## EF3182 hypothetical protein 50 28 Op 2 . + CDS 53937 - 55388 1019 ## EF3181 hypothetical protein + Prom 55400 - 55459 7.1 51 29 Op 1 . + CDS 55509 - 56006 520 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 52 29 Op 2 . + CDS 56031 - 56915 777 ## EF3179 hypothetical protein + Term 56929 - 56969 7.1 + Prom 56959 - 57018 2.7 53 30 Tu 1 . + CDS 57045 - 58181 1497 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases + Term 58187 - 58233 8.1 - Term 58167 - 58228 14.5 54 31 Op 1 . - CDS 58235 - 59026 785 ## EF3177 hypothetical protein 55 31 Op 2 . - CDS 59063 - 59158 56 ## + Prom 59093 - 59152 7.4 56 32 Op 1 . + CDS 59190 - 59573 325 ## COG3304 Predicted membrane protein + Prom 59577 - 59636 2.4 57 32 Op 2 2/0.118 + CDS 59662 - 60087 578 ## COG1959 Predicted transcriptional regulator 58 32 Op 3 . + CDS 60155 - 60775 883 ## COG2910 Putative NADH-flavin reductase + Term 60782 - 60841 21.5 - Term 60770 - 60829 22.3 59 33 Tu 1 . - CDS 60854 - 62059 1528 ## EF3173 hypothetical protein - Prom 62148 - 62207 8.3 + Prom 62153 - 62212 6.5 60 34 Op 1 5/0.000 + CDS 62251 - 63495 214 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase + Prom 63499 - 63558 4.8 61 34 Op 2 . + CDS 63609 - 64655 1597 ## COG0468 RecA/RadA recombinase + Term 64684 - 64735 3.5 62 35 Op 1 . + CDS 64761 - 64856 67 ## + Term 64883 - 64915 3.2 + Prom 64889 - 64948 7.2 63 35 Op 2 . + CDS 65052 - 66608 2137 ## COG1418 Predicted HD superfamily hydrolase + Term 66637 - 66691 17.1 + Prom 66679 - 66738 6.6 64 36 Op 1 . + CDS 66768 - 67565 947 ## COG1692 Uncharacterized protein conserved in bacteria + Term 67566 - 67624 5.1 65 36 Op 2 . + CDS 67654 - 68025 629 ## EF3168 hypothetical protein 66 36 Op 3 6/0.000 + CDS 68026 - 70602 2913 ## COG0249 Mismatch repair ATPase (MutS family) 67 36 Op 4 . + CDS 70634 - 72766 2143 ## COG0323 DNA mismatch repair enzyme (predicted ATPase) 68 36 Op 5 . + CDS 72791 - 73345 571 ## COG0424 Nucleotide-binding protein implicated in inhibition of septum formation + Term 73351 - 73402 3.1 + Prom 73385 - 73444 3.5 69 37 Op 1 . + CDS 73478 - 73915 505 ## COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase + Prom 73976 - 74035 4.9 70 37 Op 2 . + CDS 74090 - 75061 1176 ## COG0462 Phosphoribosylpyrophosphate synthetase + Term 75080 - 75122 16.1 + Prom 75063 - 75122 6.9 71 38 Tu 1 . + CDS 75299 - 75442 156 ## EF3247 hypothetical protein + Term 75514 - 75552 5.0 - Term 75613 - 75649 2.5 72 39 Tu 1 . - CDS 75682 - 76275 296 ## EF3160 hypothetical protein 73 40 Op 1 11/0.000 - CDS 76695 - 77345 811 ## COG0637 Predicted phosphatase/phosphohexomutase 74 40 Op 2 . - CDS 77360 - 80071 2248 ## COG1554 Trehalose and maltose hydrolases (possible phosphorylases) - Prom 80113 - 80172 4.4 75 41 Tu 1 . + CDS 80366 - 81079 698 ## COG2188 Transcriptional regulators + Term 81173 - 81236 21.4 + Prom 81346 - 81405 6.3 76 42 Op 1 . + CDS 81475 - 82185 712 ## EF3154 hypothetical protein 77 42 Op 2 . + CDS 82281 - 82997 850 ## EF3155 hypothetical protein + Term 83005 - 83049 7.1 - Term 83000 - 83030 2.0 78 43 Tu 1 . - CDS 83038 - 83490 822 ## COG1970 Large-conductance mechanosensitive channel - Prom 83719 - 83778 7.7 + Prom 83541 - 83600 5.5 79 44 Op 1 14/0.000 + CDS 83699 - 84967 1283 ## COG0612 Predicted Zn-dependent peptidases 80 44 Op 2 3/0.000 + CDS 84960 - 86264 1445 ## COG0612 Predicted Zn-dependent peptidases + Prom 86290 - 86349 5.1 81 44 Op 3 . + CDS 86432 - 87298 891 ## COG1426 Uncharacterized protein conserved in bacteria + Term 87310 - 87367 5.1 + Prom 87314 - 87373 7.2 82 45 Op 1 . + CDS 87423 - 87635 174 ## gi|255970662|ref|ZP_05421248.1| predicted protein + Prom 87653 - 87712 5.2 83 45 Op 2 . + CDS 87734 - 88312 331 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase + Term 88327 - 88358 4.1 + Prom 88457 - 88516 8.7 84 46 Op 1 4/0.000 + CDS 88559 - 89158 484 ## COG1846 Transcriptional regulators 85 46 Op 2 . + CDS 89158 - 90942 222 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P + Term 91010 - 91054 6.0 - Term 91056 - 91099 11.2 86 47 Tu 1 . - CDS 91200 - 92087 610 ## COG1737 Transcriptional regulators + Prom 92394 - 92453 13.8 87 48 Op 1 . + CDS 92499 - 93398 998 ## COG1023 Predicted 6-phosphogluconate dehydrogenase 88 48 Op 2 . + CDS 93411 - 94412 907 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases 89 48 Op 3 . + CDS 94427 - 95533 1106 ## COG0371 Glycerol dehydrogenase and related enzymes 90 48 Op 4 13/0.000 + CDS 95546 - 96382 876 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 91 48 Op 5 1/0.176 + CDS 96403 - 97275 1169 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 92 48 Op 6 9/0.000 + CDS 97297 - 97803 631 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 93 48 Op 7 . + CDS 97881 - 98333 704 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 94 48 Op 8 . + CDS 98357 - 99430 1127 ## COG1312 D-mannonate dehydratase 95 48 Op 9 . + CDS 99435 - 100088 788 ## COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase + Term 100134 - 100187 6.8 + Prom 100302 - 100361 5.5 96 49 Tu 1 . + CDS 100402 - 100872 669 ## COG4405 Uncharacterized protein conserved in bacteria + Term 100876 - 100933 3.1 + Prom 100874 - 100933 5.0 97 50 Op 1 . + CDS 101048 - 101266 416 ## COG4443 Uncharacterized protein conserved in bacteria 98 50 Op 2 . + CDS 101283 - 102167 1081 ## COG1561 Uncharacterized stress-induced protein 99 50 Op 3 . + CDS 102223 - 102528 505 ## EF3130 hypothetical protein + Term 102533 - 102573 6.5 - Term 102523 - 102559 7.3 100 51 Tu 1 . - CDS 102574 - 104055 1594 ## COG1686 D-alanyl-D-alanine carboxypeptidase - Prom 104133 - 104192 5.0 + Prom 104185 - 104244 4.4 101 52 Op 1 25/0.000 + CDS 104279 - 104893 783 ## COG0194 Guanylate kinase 102 52 Op 2 3/0.000 + CDS 104898 - 105200 505 ## COG1758 DNA-directed RNA polymerase, subunit K/omega + Term 105222 - 105269 8.3 + Prom 105266 - 105325 5.2 103 53 Op 1 4/0.000 + CDS 105355 - 107787 2704 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase 104 53 Op 2 26/0.000 + CDS 107871 - 108308 660 ## COG0242 N-formylmethionyl-tRNA deformylase 105 53 Op 3 20/0.000 + CDS 108301 - 109242 1354 ## COG0223 Methionyl-tRNA formyltransferase 106 53 Op 4 3/0.000 + CDS 109248 - 110627 1419 ## COG0144 tRNA and rRNA cytosine-C5-methylases 107 53 Op 5 17/0.000 + CDS 110629 - 111378 722 ## COG0631 Serine/threonine protein phosphatase 108 53 Op 6 7/0.000 + CDS 111375 - 113531 2317 ## COG0515 Serine/threonine protein kinase + Term 113570 - 113609 -0.4 + Prom 113538 - 113597 4.1 109 53 Op 7 10/0.000 + CDS 113780 - 114673 945 ## COG1162 Predicted GTPases 110 53 Op 8 6/0.000 + CDS 114697 - 115350 965 ## COG0036 Pentose-5-phosphate-3-epimerase 111 53 Op 9 . + CDS 115347 - 115991 567 ## COG1564 Thiamine pyrophosphokinase + Term 115995 - 116047 19.1 - Term 116011 - 116061 6.0 112 54 Tu 1 . - CDS 116094 - 116282 318 ## PROTEIN SUPPORTED gi|29377572|ref|NP_816726.1| 50S ribosomal protein L28 - Prom 116514 - 116573 9.1 + Prom 116480 - 116539 3.3 113 55 Op 1 9/0.000 + CDS 116567 - 117457 247 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 114 55 Op 2 . + CDS 117459 - 118691 1145 ## COG1668 ABC-type Na+ efflux pump, permease component + Term 118757 - 118804 9.4 Predicted protein(s) >gi|307679204|gb|GL457043.1| GENE 1 2 - 1960 1854 652 aa, chain + ## HITS:1 COG:no KEGG:EF3250 NR:ns ## KEGG: EF3250 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 8 652 1 645 645 626 58.0 1e-177 TFKQSGTLPDTYTTGGKTYKFKGWYKGKTKPNTLTTTKAPSYAVTYDDNDDLNVVYEEVN FPETTYQFGFVNEAGQLVNPDDINLTYDYKSIVYRGTGAAGSTVSFGTIANNQSGVKVGN LRQVTLPAKNIAQPTVVGWNGEAFANFSINLPKYYKSLNLYDKTGKIDPKYPLPVKTTVS SVSNDTVQPEANVIAELTLTQRADGSFTPRETYSGIDSSVRYPPFLRRTVSYSSSGSITA LYQTISGPVYYHLTNRKVTENFVNTSGAKITPPAGFTQGNQIPMTSNTFKYTSAKALPAS YSAGGKTYVFQGWYKGKTKPNTLTTSTTPAYNTTFDDNDDMTAVYKEANISANLTMRGAV DVIDNGATMEYWEVLLKNTGEAPLTSVKIKPTTDWAAGISTPTELFILGTGQNTKVRPIT KEQWEAGFEIPLDSSIPVGGQLTINLLGTKVTGQPNQVLKAAVEFTGNFNKLTASDTVRI KDLDQETKEPTGEGFISVPTFNFGQVGVAGSTQQHSLKKAADYYGNGTRNPYLRIKKTQP NWSLTAQLSQPKSATDSLPTTTRLLLGTAAAASFTDYNQPTETKTPLGKTGIVNLTADNT ATAVVANQQFIGSDVYQLDFTFANIKLEVPANQGMSGQQYQAAVTWNLVAGP >gi|307679204|gb|GL457043.1| GENE 2 2155 - 2298 196 47 aa, chain - ## HITS:1 COG:no KEGG:EF3249 NR:ns ## KEGG: EF3249 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 47 1 47 47 69 91.0 5e-11 MNVSTKIYERRGLLSIAEALALMISFGSFIATLIFGILEAVKENNKK >gi|307679204|gb|GL457043.1| GENE 3 2529 - 2633 156 34 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSAYETIQTILGFGMFTIALIALIVKLLKNDKKK >gi|307679204|gb|GL457043.1| GENE 4 3007 - 4623 1384 538 aa, chain - ## HITS:1 COG:BH3670 KEGG:ns NR:ns ## COG: BH3670 COG1316 # Protein_GI_number: 15616232 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 237 530 10 304 304 207 41.0 6e-53 MQTSNKKFPLYALTTLVFTFLTLLVAASPNWFQQMDEAIYHIKWQLNAPLLTAVNLLAKT ATIGPMLLFFLLLMVYLLRKKEKILAFWAVSNLLAVGFLGSVFKHVVGRARPNLGALADR SSASFPSGHSLLAMALVCTILIILAYLHVEKTKGIKIFLLTYLVLIVLGRLILRVHYPSD VIAGMLLSYSWINFSFQIVQRYLPAPEPEEAEVPTQRRRRHSRKRKSLFVVFSLTLLFLG TLSVSAYGVSMYRNLQKTANTMYKPRKSSTKSPDLAKGEPVSFLIMGIANDSKRKTDYRS NALMVVTVNNQLQKTTITSIPRDYYVEMAGTNGEYNKINAAHVFGGADMQIKTVENVLHI PINHYFSIDMDAMKDLGDAVGGVTVDNAFAFDAEGIHYPKGKQHLGGWEALQYARMRYED PEGDYGRQRRQREVLIELTNKLLSFNSLLKYQEILDVIGEHGETDLSFDQMMAMLKKYTP ALKTIETDQLKGYDYTGDGVTGIEGISYQLVEESERQRVENAIKEQMNLSTKDTEQSQ >gi|307679204|gb|GL457043.1| GENE 5 5309 - 5947 610 212 aa, chain + ## HITS:1 COG:L11456 KEGG:ns NR:ns ## COG: L11456 COG3397 # Protein_GI_number: 15673933 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 1 211 1 206 220 149 40.0 3e-36 MKKMMLFIIAVGATMISVFALGDAQQSYAHGYVDSPVSRVKNAEANGFGWGPGQDSSQPE IITTPQGIEAPTKLLDTGQLNGRLPSAGLASYSKLDEQTATRWVKSNITTGENNFKWVMT AKHKTNRFRYYMTKPGWNPNAPLTMDEMELIGIVGQPIGQDLPPGQGFMVNDTETHRIKI PADRKGYHVIYAVWDINDTINSFYQAIDVNVQ >gi|307679204|gb|GL457043.1| GENE 6 6211 - 7203 1057 330 aa, chain - ## HITS:1 COG:SPy1362_2 KEGG:ns NR:ns ## COG: SPy1362_2 COG0340 # Protein_GI_number: 15675294 # Func_class: H Coenzyme transport and metabolism # Function: Biotin-(acetyl-CoA carboxylase) ligase # Organism: Streptococcus pyogenes M1 GAS # 81 321 2 235 240 199 44.0 8e-51 MSTKSQVLTLLMKQTPAFLSGEEMAQRLSLSRTAIWKAINELKKDGYQITSVQNKGYRLE KSDVLSAEGIQLALWPQTPPLTITVLETSESTMTDAKRAILDQTPDNTLIVADMQEMPRG RFGRPFFATPGKGIYMSMVLQPNQNFEEIAQYTVIMAVAVARAMDALAGVHTEIKWVNDL YLNGKKVCGILSEAMSNVETGQISNVIIGMGINFSITETEFPEDIRQKVTSLFPDGEPTA TRNELVANIWNHFYQILDKRSTKDFLEEYRQRSFVIGKDVAFTQNGQDFRGVATTISGNG ELIVQLPDGTAKTLSSGEISLDQIGEWRRG >gi|307679204|gb|GL457043.1| GENE 7 7342 - 7557 312 71 aa, chain + ## HITS:1 COG:L121994 KEGG:ns NR:ns ## COG: L121994 COG3478 # Protein_GI_number: 15672697 # Func_class: R General function prediction only # Function: Predicted nucleic-acid-binding protein containing a Zn-ribbon domain # Organism: Lactococcus lactis # 3 70 5 72 72 99 76.0 1e-21 MEKQQYVCEKCGNMHYVSDQFQATGGNFAKIFDVQNKKFITISCTQCGYTELYRSQTSGG MNVLDFLLGGG >gi|307679204|gb|GL457043.1| GENE 8 7749 - 7916 76 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315144220|gb|EFT88236.1| ## NR: gi|315144220|gb|EFT88236.1| conserved domain protein [Enterococcus faecalis TX2141] # 1 55 1 55 55 70 100.0 3e-11 MSRNTLEVVEIGATRSVASVPAVYQFLSVEQKSKVIFVPRALSNYVVNSVTLSVI >gi|307679204|gb|GL457043.1| GENE 9 7971 - 8201 299 76 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307288305|ref|ZP_07568301.1| ## NR: gi|307288305|ref|ZP_07568301.1| toxin-antitoxin system, antitoxin component, AbrB domain protein [Enterococcus faecalis TX0109] toxin-antitoxin system, antitoxin component, AbrB domain protein [Enterococcus faecalis TX0109] toxin-antitoxin system, antitoxin component, AbrB domain protein [Enterococcus faecalis TX1302] # 1 76 44 119 119 153 100.0 4e-36 MLTTKSRRQGNSVVLTLPTDNGKKPKVDQEYIVMYSDDGTITLVPKIQDPFSEGPEGEYY EKDEWHDLAPEGRELF >gi|307679204|gb|GL457043.1| GENE 10 8201 - 8542 292 113 aa, chain + ## HITS:1 COG:DR0417 KEGG:ns NR:ns ## COG: DR0417 COG2337 # Protein_GI_number: 15805444 # Func_class: T Signal transduction mechanisms # Function: Growth inhibitor # Organism: Deinococcus radiodurans # 7 105 5 103 117 76 36.0 1e-14 MNVEKKYIPKKGDIVWIDFDPAAGKEIQKRRPGLVVSRYEFNRKTMFAVICPITSTIKNI PTRYTLPDDIETHGQVVISQLKSLDFTERKLSQIEHLPLKDMAKIDQIIEYIF >gi|307679204|gb|GL457043.1| GENE 11 8913 - 12527 849 1204 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163796927|ref|ZP_02190884.1| 30S ribosomal protein S12 [alpha proteobacterium BAL199] # 725 1140 906 1387 1392 331 43 9e-90 MAGHVVKYGKHRERRSFARISEVLELPNLIEIQTDSYQWFLDEGLREMFEDILPIDDFQG NLSLEFVDYELKEPKYTVEEARAHDANYSAPLHVTLRLTNRETGEIKSQEVFFGDFPLMT EMGTFIINGAERVIVSQLVRSPGVYFHGKVDKNGKEGFGSTVIPNRGAWLEMETDAKDIS YVRIDRTRKIPLTVLVRALGFGSDDTIFEIFGDSESLRNTIEKDLHKNASDSRTEEGLKD IYERLRPGEPKTADSSRSLLTARFFDPKRYDLANVGRYKVNKKLDLKTRLLNLTLAETLV DPETGEIIVEKGTVLTHQIMETLGEYIDNGLNSVTYYPSEDAVVTEPMTIQVIQVLSPKD PERIVNVIGNGYPDDSVKTVRPADIVASMSYFFNLMEDIGNVDDIDHLGNRRIRSVGELL QNQFRIGLARMERVVRERMSIQDTETLTPQQLINIRPVVASIKEFFGSSQLSQFMDQTNP LGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYAK VNKFGFIETPYRRVDRATGRVTDQVDYLTADIEDHYIVAQANSLLNEDGTFANDVVMARL QSENLEVAVDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIQPRSP WVGTGMEYKSAHDSGAALLCKHDGVVEFVDAKEIRVRRDNGALDKYMVTKFRRSNSGTSY NQRPIVHLGEKVEKGDTLADGPSMEEGEMALGQNVLVAFMTWEGYNYEDAIIMSRRLVKD DVYTSVHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVQDGDLLVG KVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTREAGDELSPG VNMLVRVYIVQKRKIHEGDKMAGRHGNKGVVSRIMPEEDMPFLPDGTPVDIMLNPLGVPS RMNIGQVLELHLGMAARQLGIHVATPVFDGATDEDVWETVREAGMASDAKTVLYDGRTGE PFDNRISVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALE AYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQSLGLDMRV LDIEEAEIELRDMDDDDDDLITVDALTKFAEQQSAKQLEKEAESVVKEEAQDVVQEIETA EDRD >gi|307679204|gb|GL457043.1| GENE 12 12694 - 16347 4294 1217 aa, chain + ## HITS:1 COG:lin0286 KEGG:ns NR:ns ## COG: lin0286 COG0086 # Protein_GI_number: 16799363 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta' subunit/160 kD subunit # Organism: Listeria innocua # 1 1202 1 1201 1201 1930 79.0 0 MIDVNKFESMQIGLASPEKIRSWSYGEVKKPETINYRTLKPEREGLFCERIFGPTKDWEC ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM SPRALEEVIYFASYVVIEPGDTTLEKKQLLTEREYREKREQYGQAFKAAMGAEAVKQLLD NVDLDGEVAQLKEELKTASGQKRTRAIRRLDILEAFRASGNQPSWMVMDVIPVIPPDLRP MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPSIIVQNEKRMLQEAVDALIDNGR RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPFLKMYQCGLPKE MAIELFKPFVMRELVQREIATNIKNAKRKIERGEDEVWDILEEVIQEHPVLLNRAPTLHR LGIQAFEPVLVEGRAIRLHPLVCEAYNADFDGDQMAVHVPLNEEAQAEARMLMLAAQNIL NPKDGKPVVTPSQDMVLGNYYLTMEEEGREGEGMIFRDMNEAVLAWQNGYVHLHSRIGVQ TTLLGDKPFTDWQKERILITTVGKIIFNEIMPVEFPYLNEPTDYNLTVQTPDKYFVEAGT DIPAHIKEQELVLPFKKKNLGNIIAEVFKRFHITETSKMLDRMKDLGYKHSTYAGMTVGI ADIMVLHEKQAIIDAAHKQVETITKQFRRGLITDDERYERVIGVWNGAKDEIQQKLIESM EARNPIFMMSDSGARGNISNFTQLAGMRGLMAAPNGRIMELPIISNFREGLSVLEMFIST HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLEIEAIREGNEIIEPLD ERLLGRYTRKSVVHPETGAIIIGADQLITEDLAREIVDAGIEKVTIRSVFTCNTKHGVCK HCYGRNLATGSDVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF EARNPKGQAVITEVTGEVIDISEDPATRQKEVTIKGKTDTRTYTVPYTARMKVAEGDIIH RGAPLTEGSIDPKQLLQVRDVLSVENYLLREVQRVYRMQGVEIGDKHIEVMVRQMLRKIR VMDPGDTEILPGTLMDIAEFKDRNYDTLVAGGVPATSRPVLLGITKASLETISFLSAASF QETTRVLTDAAIRGKKDPLLGLKENVIIGKIIPAGTGMARYRNMEPKEVGVASENVYSIS DIEAQMAAEDAMKNINK >gi|307679204|gb|GL457043.1| GENE 13 16415 - 17107 246 230 aa, chain - ## HITS:1 COG:aq_1601 KEGG:ns NR:ns ## COG: aq_1601 COG1989 # Protein_GI_number: 15606720 # Func_class: N Cell motility; O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, prepilin signal peptidase PulO and related peptidases # Organism: Aquifex aeolicus # 3 223 7 236 254 93 30.0 4e-19 MFFLNLFLIGACFGSFLCLVAERLPVGRSLWWPPSHCQGCHQPLQLYELIPVVSILLQRF RCRKCQQPVAKSYLLAELVMGGLTASCFSAGLTIDALILWWWLTSAFTLSLIDYWYLVVE PKILYPSFLVLCLLKMAGQHSFYLLTGLFCFCFFQAVLHYFPEAMGRGDLLLLGLWGCFL QVPQLLMLLFFASSYGLIYGYSCKFLGYPVEQTLPFVPFLSLGLLTISCL >gi|307679204|gb|GL457043.1| GENE 14 17216 - 18736 1750 506 aa, chain + ## HITS:1 COG:BS_gntK KEGG:ns NR:ns ## COG: BS_gntK COG1070 # Protein_GI_number: 16081058 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Bacillus subtilis # 1 506 1 507 513 413 40.0 1e-115 MEKLAIGVDVGTTQAKAVAFQPNGTVVASSYVRYPLIQETEGMAEQDPETLFQAVVNCIR TVTQQVKNQPIGLISFASAMHGLIAMDAQGRPLTQVITWADTRASDYAEALKETPAAQLF YQLTGMPVHPMAPLYKIRWLQENQPAVAQSAAKFIGIKDYIFYRFFGEYWTDYSSASGMG LFNIHTRQWESSILAYLSIEEEQLPKVAPSTFIFPALAPSWQEMLGVEEETVLVLGGADG PLSNLGLGALGMGVATLTVGTSGALRYIVEEPFLHPQGETFCFALDEQHWVIGGASSNGA VALDWASQTIFAEERQQAIQNGTNLYDPIMAKIATVPAGANGLLFHPYLLGERAPLWNAE ASASFIGLRKNHHAGHLARAVVEGICFNLKTILEDLKQLGGPVQEIRATGGFADSPVFRQ IMADVLGETLSFTDSTEASALGAVLLGWQGLGQLPNLQAAAQQVLIHETVTPRADQLLVY QELYPVFQETQQVLAQSYQKLAEFRK >gi|307679204|gb|GL457043.1| GENE 15 18820 - 19539 589 239 aa, chain + ## HITS:1 COG:no KEGG:EF3234 NR:ns ## KEGG: EF3234 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 239 1 239 239 340 97.0 4e-92 MKKQLLPLFLLFIGALASCSAPSRSGEKAAQQLVDYFIYQEKTATFSQTFREPKVLAEHL QTSRQQFQKQFFNSLKEMNAEVTETEAQKLSAELLAQVKKKASYQLVATKELNGQATITF QIKGLDFVTAIEDTTTALLQQTQQATQALDMQHTLAVLKKEIRQINVSHEPVELPLTVKQ VEGQWYLPAVEQLRLNQFFLAFVTGKEDTDQLTEALDTILTQAEQKVVTADERTAISGN >gi|307679204|gb|GL457043.1| GENE 16 19667 - 20134 562 155 aa, chain + ## HITS:1 COG:SPy1531 KEGG:ns NR:ns ## COG: SPy1531 COG0783 # Protein_GI_number: 15675430 # Func_class: P Inorganic ion transport and metabolism # Function: DNA-binding ferritin-like protein (oxidative damage protectant) # Organism: Streptococcus pyogenes M1 GAS # 2 153 24 175 175 174 51.0 8e-44 MKFEKTKEILNQLVADLSQFSVVIHQTHWYMRGPEFLTLHPQMDEYMDQINEQLDVVSER LITLDGSPFSTLREFAENTKIEDEIGNWDRTIPERMEKLVAGYRYLADLYAKGIEVSGEE GDDCTQDIFIANKTDIEKNIWMLQAKLGKAPGIDA >gi|307679204|gb|GL457043.1| GENE 17 20254 - 20799 930 181 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227517177|ref|ZP_03947226.1| ribosomal protein L13 [Enterococcus faecalis TX0104] # 1 181 1 181 181 362 99 4e-99 MIEGKILNGIVCPTMSPGNSSVCQTSKTKLEERNVRTTYMAKAGEVERKWYVVDATDVPL GRLSAVVASVLRGKNKPTFTPHVDTGDFVIVINADKVKLTGKKATDKIYYRHSMYPGGLK SVTAGELRDKNSRRLIETSVKGMLPKNTLGRKQFTKLNVYGGAEHPHAAQQPEVLDITNL I >gi|307679204|gb|GL457043.1| GENE 18 20813 - 21205 653 130 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29377675|ref|NP_816829.1| 30S ribosomal protein S9 [Enterococcus faecalis V583] # 1 130 1 130 130 256 99 5e-67 MAQVQYSGTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLREVINQPFGVTETKGA YDVIVNVNGGGYAGQSGAIRHGIARALLQVDPDFRSALKRAGLLTRDARMVERKKPGLKK ARKASQFSKR >gi|307679204|gb|GL457043.1| GENE 19 22199 - 23368 479 389 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315144162|gb|EFT88178.1| ## NR: gi|315144162|gb|EFT88178.1| hypothetical protein HMPREF9495_01983 [Enterococcus faecalis TX2141] # 1 389 24 412 412 656 100.0 0 MFDYIRKDPEQFITIFTVLSALLLNLLGFSDEDVRKKKLRIILLSYTIIFMLVLSAGENV TFFMFLLNVSLFLFGGLIYSANMDQDLEKELNLLQFFIYNSSAWFLLVQNYVILIETIVL FILIPIVRAFNFNSFMTKVILSVFSLIACFIQYFSVIKDYFDLKSFSVVLKELNKNREVT LNMEHPKPDNSNLNILKNNQKKLLSFVLYCEDKNFFESKSNTISFVDLKMKWEKPSIFKD KITLDIESKKRKYFRGYSTIEQQLIRQFSMAPYSYRYTIRRKLFNDWVYTPLFCKAICNR KSRVYGKKKKRIARKELMWNLKYIFLIQYFTIILKTPSNLKELIEEMSKQSRVSVEVYEK MYTIFKDSDEVNYYIEQIEENASRKFNFY >gi|307679204|gb|GL457043.1| GENE 20 23560 - 26079 1896 839 aa, chain - ## HITS:1 COG:STM0571_1 KEGG:ns NR:ns ## COG: STM0571_1 COG1221 # Protein_GI_number: 16763948 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Salmonella typhimurium LT2 # 21 309 28 337 460 248 42.0 3e-65 MRLETYQHLVDILETSNTPMSTQEIATKIQLSRSVTSLYLNKLLEKGEVQQTGKKPVYWQ LTRATTPTTDVFRQYIGSQGSAKKAIEQCKAAMLYPPLGMPLLIHGASGVGKSFLAKLIY EYLKNEQIIGLEKFYTFNCADYANNPELLSSILFGHTKGAFTGAESEKQGLLAQANNSVL FLDEVHRLSNENQEKLFQFMDTGTFRPIGEEGKMVHSKVRLLFATTENPKKVLLPTFYRR ISVIVSLPNFKERPIRERIAILKNLFHREAKRMTKDINVDEEIFTALLENDEPGNVGSLS NKVQLLCASQLRKTLPNQPVVIGDATQPMITIPLDKEVLEEDTLSSDIFATFEALFTKEK TLAHLKTELTQFIKYCLDDEITLENDYFLQNLVTEVQTKNKLIINQPEQTEKPMKDVAKL LKILPPTFNETMLLPVQAQLKEHYPRTVSLVKNLVSPLPEEYRFLTEVLLSVLLSGEISE TIPYQALLVAHGESTATSIQAVANKLCGIYIFDAINMPLTSSVRDIVAEVKDWLSQRDTS QGVIMLVDMGSLTQLYKSLKPQILGELLVINNLTTAYALEIGHQLMNEQLFYGIAKTAEK KFKTDVQYFEGFSVEKNIIVSSISGLDIAKQIKQICQKYLYTDIKVITLKYKDLVNTLDI ANAEENYLKETSLILTTSYLDNHTNVASVNLLDMLDEDAGTQLMEPFQNLMHPNNIDSMI NEFVHFFSKEGLSEKLEFLNPDVIIKQVENVTKNIEKRFDLTHSGKMKFNLMMHNALMVE RTMLGVEDYEIPANLEELTINQKPFFQNAKNIFYTLEQFYRIEISNWELYVIYEILSSR >gi|307679204|gb|GL457043.1| GENE 21 26227 - 27054 978 275 aa, chain - ## HITS:1 COG:SPy1060 KEGG:ns NR:ns ## COG: SPy1060 COG3716 # Protein_GI_number: 15675052 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Streptococcus pyogenes M1 GAS # 1 264 1 264 275 422 80.0 1e-118 MKLKENLSKEEKKMMRSVFWRSWTMNASRTGATQYHAVGVMYTLLPVINRFYKTKEERAE ALVRHTTWFNATMHINNFIMGLVASMEKQNSEDENFDASSITAVKASLMGPLSGIGDSFF WGILRVIAAGIGISLASTGSPLGAIVFLLLYNVPAFLIHYYALYSGYSIGESFIQKMYES GGMKILTKVSSMLGLMMMGSMTASNVKFKTILEVSVKGSEDVVKIQDYLDQLFVGIVPLA VTLLAFWLLRKKVNVNVVMFGIMFLGILLGLLGIC >gi|307679204|gb|GL457043.1| GENE 22 27051 - 27866 961 271 aa, chain - ## HITS:1 COG:SPy1059 KEGG:ns NR:ns ## COG: SPy1059 COG3715 # Protein_GI_number: 15675051 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Streptococcus pyogenes M1 GAS # 7 271 1 263 263 342 80.0 4e-94 MLMHATMAALAVFICFAGNYLTGQSMMERPLVVGLVTGILMGDMKTGVLMGASLEAIFLG NVNIGGVIAAEPVTATTLATTFAIISNVEQKAAMTLAVPIGMLAAFVVMFLKNVFMNIFA PSLDKAAREGNQKMVVTLHYGTWIIYYLIIASISFIGILAGSGPVNLFVESIPQNLMNGL SAAGGLLPAVGFAMLMKLLWDNKLAVFYILGFVLTAYLQLPAVAVAVIGTVICVVSAQRD VEFRDILKRKPAASSAVEGSAKEIEEEDFFA >gi|307679204|gb|GL457043.1| GENE 23 27883 - 28374 752 163 aa, chain - ## HITS:1 COG:SPy1058 KEGG:ns NR:ns ## COG: SPy1058 COG3444 # Protein_GI_number: 15675050 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Streptococcus pyogenes M1 GAS # 1 163 1 163 163 222 77.0 2e-58 MITQVRVDDRLIHGQVAVVWTKELNAPLLVVANDEAAKNEVMQMTLKMAVPNGMKLLIRS VDDAIDVFNDPRGKDKRIFVIVNSVADATKIAKNVTDIESVNVANAGRFDKSDPATKTMV FPSVQLNPEELEAAKELASLTHVESYNQVLPTNSKLSLKQAVN >gi|307679204|gb|GL457043.1| GENE 24 28387 - 28806 612 139 aa, chain - ## HITS:1 COG:SPy1057 KEGG:ns NR:ns ## COG: SPy1057 COG2893 # Protein_GI_number: 15675049 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Streptococcus pyogenes M1 GAS # 1 139 1 140 141 145 56.0 3e-35 MKRKFLIASHGNLAKGFQSSLDILADKGKELAVINAYVTPEDYTPIIQTFLQSLGAEEQA IILTDLYGGSVNQKIVQEVMTTKLDNVFIISNANLAIALSLIFLKEGEKLTKEDIQAAIA EAQIQFVELNPSNEEENFF >gi|307679204|gb|GL457043.1| GENE 25 29064 - 29999 963 311 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 301 1 303 311 375 65 1e-103 MTDALVIQDLRKVYASGVEALRGIDLTVEEGDFYALLGPNGAGKSTTIGIVTSLVNKTSG KVKIFGYDLDTEMVRAKQQIGLVPQEFNFNPFETVQQIVVNQAGYYGVSRKEAMKRSEKY LKQSNLWEKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRREMWAFLQ ELNAQGTTIILTTHYLEEAEMLCRNIGIIQSGELIENTSMKHLLAKLQFETFIFDLAPYT QAPVIEGYQSVFEDELTLAVEVERNQGVNHLFEQLSQQGIKVLSMRNKSNRLEELFLKIT EDTYQREDQHV >gi|307679204|gb|GL457043.1| GENE 26 29992 - 30762 763 256 aa, chain + ## HITS:1 COG:lin0673 KEGG:ns NR:ns ## COG: lin0673 COG0842 # Protein_GI_number: 16799748 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Listeria innocua # 1 256 1 256 256 373 84.0 1e-103 MFSLYFTALKSLAVKETNRYLRIWVQTLVPPVITTSLYFVIFGKMIGGRIGDMGGFSYME FIVPGLIMMSAITSSYANVSSSFFSQKFQKNIEEILVAPVPTHVIIWGFVIGGVGRSILV GALVTIISLFFVPLHVVSWLMVIMTLLMTAILFSLAGLLNGIFAQSYDDVSIVPTFVLQP LTYLGGVFYAISMLPPFWQAVSKVNPIVYMISGFRYGFLGVQDVPIGISMTILILFIVVL YGICWYLVETGRGLRS >gi|307679204|gb|GL457043.1| GENE 27 30950 - 31924 1154 324 aa, chain + ## HITS:1 COG:BS_yfjN KEGG:ns NR:ns ## COG: BS_yfjN COG0042 # Protein_GI_number: 16077870 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-dihydrouridine synthase # Organism: Bacillus subtilis # 1 320 1 320 325 490 76.0 1e-138 MSKNFWATLPKPFFVLAPMEDVTDVVFRHVVKEAGAPDVFFTEFTNSDSYCHPEGKDSVR GRLVFTEDEQPMVAHIWGDKPEFFREMSIGVAEMGFQGLDINMGCPVPNVAERGKGSGLI LRPEVAAELIDAAKAGGLPVSVKTRIGFTEMAEMEAWITHLLEQDIANLSIHLRTRKEMS KVDAHWEVIPQIMAIRDRVAPQTTITINGDIPDRQKGLELAEQYGVDGIMIGRGIFKNPY AFEKEPKTHTPQELLGLLRLQLDLQDKYAELVPRSIVGLHRFFKIYVKGFPGASDLRAQL MNTKSTDEVRQLLATFEAEHGVLD >gi|307679204|gb|GL457043.1| GENE 28 32124 - 33659 1377 511 aa, chain - ## HITS:1 COG:SPy0714_1 KEGG:ns NR:ns ## COG: SPy0714_1 COG0803 # Protein_GI_number: 15674772 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Streptococcus pyogenes M1 GAS # 1 319 1 322 322 322 51.0 1e-87 MKKFTLPLLAALSLILFGACGKTNTSDKTADGKEKLSIVTTFYPMYDFTKNIVGDEGDVK LLIPAGSEPHDYEPSAKDMATIHDADVFIYHNENMESWVPKAAKGWKKGAPNVIKGTENM VLLPGSDEDGHDHDHEHGEEGHHHELDPHTWVSPHRAIQEVTNIKEQLVKLYPKKAKTFE TNAEKYLTKLTALDKEFQTALKDAKQKSFVTQHAAFGYLALDYGLKQVPIAGLTPEQEPT AGRLAELKKYVTDNQIRYIYFEKNANDKIAKTLADEANVQLEVLNPLESLTQKQMDNGED YLSVMKENLTALKKTTDTAGKEVQPETSEKTEKTVANGYFKDSEVAERTLTDYAGNWQSV YPLLKDGTLDQVFDYKAKLKKDKTPAEYKTYYDAGYQTDVDHINITDSTIEFLVNGKPQK FTYKAAGYKILNYAKGNRGVRFLFETDDANAGRFKYVQFSDHNIAPTKAAHFHIFFGGDS QESLFNEMDNWPTYYPNDLSKQEIAQEMIAH >gi|307679204|gb|GL457043.1| GENE 29 33680 - 33802 166 40 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEKTDLSSAYRRLKSPNIKTRKRALKIINEHKRNKQKKIA >gi|307679204|gb|GL457043.1| GENE 30 33837 - 34811 1037 324 aa, chain - ## HITS:1 COG:BMEI0036 KEGG:ns NR:ns ## COG: BMEI0036 COG0523 # Protein_GI_number: 17986320 # Func_class: R General function prediction only # Function: Putative GTPases (G3E family) # Organism: Brucella melitensis # 3 318 5 360 388 165 31.0 1e-40 MGIPITIVSGFLGAGKTTLINHALAQSPFPKEEIIIIENEFGQTGVDHALLLQTTERIIQ LNNGCMCCSLRGDLLASLSAILEVYQEEQQPIAQVILETTGIADPQPIIQTILTTPHIKN HFYIDSLLTVVDGHHWQQQLQEAEAIKQLALADRLFFSVKEPADSTQLPTFQETLRTINP FADILSFQANEPLLASDFFQLNKFTATLTEHEMTHSPHEHAHEHHHHTFHSLTLTASSAI NEPLFTRWLDWLMYTHQEKLYRFKGILALQEHDLAIAMQGVNQQVAFQMTNQPPQETTIV LIGKELETKKIQETFQTLNKIATP >gi|307679204|gb|GL457043.1| GENE 31 34827 - 34976 247 49 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29377651|ref|NP_816805.1| 50S ribosomal protein L33 [Enterococcus faecalis V583] # 1 49 1 49 49 99 100 6e-20 MRQTITLACAETGERLYLTSKNKRNTPEKLQLKKYSPKLRRRALFTEVK >gi|307679204|gb|GL457043.1| GENE 32 35087 - 35356 457 89 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29377650|ref|NP_816804.1| 30S ribosomal protein S14 [Enterococcus faecalis V583] # 1 89 1 89 89 180 100 3e-44 MAKKSKIAKAKKQQAMIAKYAPIRQALKEAGDYEGLSKLPKDAHPSRLKLRDQTDGRPRG YMRKFGMSRIRFRELAHQGLIPGVKKASW >gi|307679204|gb|GL457043.1| GENE 33 35563 - 35955 276 130 aa, chain + ## HITS:1 COG:lin0902 KEGG:ns NR:ns ## COG: lin0902 COG1765 # Protein_GI_number: 16799975 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Listeria innocua # 5 129 1 126 126 83 35.0 8e-17 MVERLTIIRGVEKFELQTKTAHWVLAKEEGYSPVQMLVSAIGACGGYVYQSVLENSHIPF EFEKIEVTYSREVERRAQPLKQVTILFYVSVPEDFQARATRCLKLVSPNCPVIQSLAERI TVEETVVFKK >gi|307679204|gb|GL457043.1| GENE 34 36317 - 37039 367 240 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 227 1 230 245 145 36 7e-34 MIELVNVSKVYQETHALKNIHFSVQPGEIVGIVGKSGSGKSTLLRLLNLMEQPSEGEIRI DGRNVQTFSKKEVRQQQQQMGMVFQHYNLLENLKIYDNVALPLKLLKEKQPEKIERLLTF VDMAHKAEAYPAQLSGGEKQRVSIARALSRNPKWLLCDEATSSLDEENTESVVRLLHKTH QEFRPTIFFVSHELETVKRLCNRILVMEKGQLIGEFLNNPQQYEEEPLSYLEKVERSLRP >gi|307679204|gb|GL457043.1| GENE 35 37036 - 37707 736 223 aa, chain + ## HITS:1 COG:STM0512 KEGG:ns NR:ns ## COG: STM0512 COG2011 # Protein_GI_number: 16763892 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Salmonella typhimurium LT2 # 12 222 6 216 219 117 41.0 2e-26 MTFSETFAEYWPSMLIGLKETGIMMSISMAICLLVGLPLGLGLFLANPKVKGHQPWLYWV LNFIVTVIRSFPYLLFVIALIPVTRSVLGKAFGPIPSSVPLSIVAIAIFARLVEQVLLDV PEEIYFLANSLGTSKVQYIWHFLLVEARSGLVLAYTTTTVSMVSYSTVMGVVGGGGIGDF AVRVGDQRYEYGIMYVAIVIMIALVFILQMLGNFIAQKLDKRK >gi|307679204|gb|GL457043.1| GENE 36 37720 - 38538 1140 272 aa, chain + ## HITS:1 COG:Cj0772c KEGG:ns NR:ns ## COG: Cj0772c COG1464 # Protein_GI_number: 15792110 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Campylobacter jejuni # 34 272 24 257 257 142 38.0 6e-34 MKKFYLATFAVIATVILAACGGNKQADQKEDKEITVAVQLESSKDILEIAKKEAEKKGYK INIMEVSDNVAYNDAVQHDEADANFAQHQPFMEMFNKEKKADLVAVQPIYYFAGGFYSKE YQDAKDLPENAKVGIPSDPTNEGRALAILNANGVIKLKEGVGFNGTVADVVENPKNITFE SIDLLNLAKAYDEKDIAMVFCYPAYLEPAGLTTKDAILLEDEEASKHYALQVVTRKGEKD SEKIKVLKEAMTTKEVAEYIKKNSKGANIPAF >gi|307679204|gb|GL457043.1| GENE 37 38630 - 40399 1841 589 aa, chain + ## HITS:1 COG:SA0250 KEGG:ns NR:ns ## COG: SA0250 COG3275 # Protein_GI_number: 15925963 # Func_class: T Signal transduction mechanisms # Function: Putative regulator of cell autolysis # Organism: Staphylococcus aureus N315 # 1 582 1 582 584 621 55.0 1e-177 MVELFILMMERVGLIILLAFLLVNVPYFKRVLLSREKMSSKVQLILIFGLFAIISNFTGI EIAKNQIVPNNLLTYLSSNASIANTRTLVIGVSGLVGGPIVGSTVGLIAGFHRVIQGGGH SFFYVPASLIVGLIAGFLGSRMAKQTVFPSAGFSAIVGACMEMIQMIFIFFFSGDLSDGA TLVRFIALPMILLNSVGTFIFMSILTTTLKQEEQAKAVQTHDVLELAAETLPYFREGLNK NSSKKVAEIIKHYTKVSAISMTNSHQILAHVGAGSDHHIPELEVITELSREVLRTGRMTI AHAKEEVGCSDPNCPLQAAIVIPLFSHQQIVGTLKMYFTDPAQLTHVEEQLAEGLGTIFS SQIELGEAEVQSKLLKEAEIKSLQAQVNPHFFFNAINTISALMRKDSEKARKLLLQLSKY FRGNLQGAVQTTIPVSQELEQVKAYLSLEQARFPNRYQVTFDVEEAVASEKVPPYAIQVL VENTIKHAFGSRKENNQVRVVVKAKQHKLHVDVYDNGQGIPEERRLLLGKTTVTSEKGSG TALENLSRRMANLYGSEGCFLIENLETGGSHVHLEIPMEQEELDARINR >gi|307679204|gb|GL457043.1| GENE 38 40380 - 41108 726 242 aa, chain + ## HITS:1 COG:BS_lytT KEGG:ns NR:ns ## COG: BS_lytT COG3279 # Protein_GI_number: 16079944 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Bacillus subtilis # 1 239 2 239 241 202 45.0 3e-52 MHVLIVDDEPLAREELSYLVSQHPQVTSVAEADSVAEAMEEMMDQKPDLLFLDIHLTDES GFDLAEKLTHLKKAPYLVFATAYDQYALKAFQVNAKDYILKPFEEEKITQVIEKASKEMA QAVPENTAEKGPKSEAIPIQGEDRIYLVAPEDIYLVSVEERQLSIFVDQQVYKMTGTLNS IEQKLPATLFIKTHRSFILNRTKIQEIQPWFNNTLQVILTNGSKVPVSRSYVKEFKEKLG LS >gi|307679204|gb|GL457043.1| GENE 39 41260 - 41679 489 139 aa, chain + ## HITS:1 COG:BS_ysbA KEGG:ns NR:ns ## COG: BS_ysbA COG1380 # Protein_GI_number: 16079943 # Func_class: R General function prediction only # Function: Putative effector of murein hydrolase LrgA # Organism: Bacillus subtilis # 3 134 4 135 146 112 58.0 3e-25 MEKKVYSFLQQAAVFAIIMLIANGLAFISPIPMPASVIGMVLLFIGLCTKVVKLEQVEGL GNSLSTVITFLFVPSGISLVNSLGIMQQFGVQIVFVILVATLALLATTGWTGAFLLHMKD ARKEKEPAATKKAKGEVRA >gi|307679204|gb|GL457043.1| GENE 40 41676 - 42359 1095 227 aa, chain + ## HITS:1 COG:BS_ysbB KEGG:ns NR:ns ## COG: BS_ysbB COG1346 # Protein_GI_number: 16079942 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative effector of murein hydrolase # Organism: Bacillus subtilis # 1 226 5 230 231 242 66.0 4e-64 MNPYVGIIISLAVFGIGTWLFKKSKGFFLFTPLFVAMILGVVVLKVTGISYEQYNEGGKY ISFFLEPATVAFAIPLYKKRDVLKKYWLEILTALTIGSFGSLVAVYFAGKVIGMDNHLVA SILPQAATTAIAVPISQTVGGIASITAFTVIFNGVLTYALGRIALKWFKINNPIAKGLAL GAAGHALGVAVGIEMGETEAAMASISVVVVGVVTVLVVPFFATVIGL >gi|307679204|gb|GL457043.1| GENE 41 42565 - 43110 652 181 aa, chain - ## HITS:1 COG:BS_yueJ KEGG:ns NR:ns ## COG: BS_yueJ COG1335 # Protein_GI_number: 16080227 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Bacillus subtilis # 2 180 3 181 183 241 60.0 5e-64 MKALISIDYTNDFVATDGKLTTGAAGQAIETALVQQTKHYFDNGDFVVFAIDGHDPLDRY HPENKLFPPHNVLGTDGRNLFGSLADFYQAHKNEATVYWMDKRHYSAFSGTDLDIRLRER GITELCLTGVCTDICVLHTAVDAYNLGYQLMIPERAVASFDEQGHEWALRHFKQTLGATI L >gi|307679204|gb|GL457043.1| GENE 42 43276 - 44289 815 337 aa, chain + ## HITS:1 COG:SA0610 KEGG:ns NR:ns ## COG: SA0610 COG0657 # Protein_GI_number: 15926332 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Staphylococcus aureus N315 # 60 334 50 318 347 153 31.0 4e-37 MKRKIVRFILWLLGILVVICLGVFLAFQLSPKPGAWVINQLFAGEVEIKDSASYDKALPN VQLQENQTYPSSRKKNTFDLYYPQTSKQAVPVVLWVHGGGYVGGDKSGMKEFATRLVADS SVAFISMNYELAPDAPYPSQLQQVNELVQFLLEKKQAYPMLDLSKLFIGGDSAGAQIALQ YATVQTNANYAKELGMTAALPASHLKGTLSYCGPVDLKQMANQQSDNRFMKFFVKTVAWS LLGTKDWQTSAELQEVSLVDKVTKEFPPTYLTDGNSFSFQEQGLALVQRLKTLNVPVSAL FFKDKKATITHEYQFDYQTKEAKQCYQETVQFVNTYK >gi|307679204|gb|GL457043.1| GENE 43 44664 - 49514 4970 1616 aa, chain + ## HITS:1 COG:no KEGG:EF3188 NR:ns ## KEGG: EF3188 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 63 1616 1 1554 1554 2601 99.0 0 MKKKIAVLLATCLLVQPFLSVSAWAIEGEQQAERTQTQPKTAETSTSEATKESSAHSIEQ SSMTESSAITEKVTTSSTETKPSEEQKQITLTFETTDQALFLNDAKSYQVVKEKNQPLRT EELPKWANSEENATFVGWSYQGKTYTNEELLQLEFSEDTQLTAVFKQKLTRMARAVSIDQ SIADTIAPADKTKVIVVPSPAGDGAAYKEYASTEAGLKEALFDLYQQGNNGDFTLYIGNN ITTSAATTAKVIPDTVTASNMTFYALQGKVNHLVITGNSADPISMDQTAPTGSKTLGFNQ NIHFGSNITLRNLNYTGTNMYLNGYSLNLNGGSSGNGLTVYGGTDTGDVSGNPTLTVNST GTGTWNFYGGNQNGGNLAGNPTIVINNTRSGLNTLSGGANIGTVTGNTSLVVNDSGGRIA SIYGGGYGTNATNTANVTGNVSTKVAITNAATGFQLSTYYGGVQYGNIGGKVTNDISGYG RWYTAGQRFIGGSSRGDIGTNRATDGITTNLNTQLYSAGRADFEGGNQYSGTIIGDITNV VTAGTNSAGGINDFNGGAGNNVSKFNKSQIGASNEATYDAYTPQQRAELAKSAAAFKVFG NISSKLVSGSFNNGAIYSTAAGRGGYIEGNTTIEVGTANGDGSLGGDGMAYSGAKPTSLD YSTTDKSRGYSSGWDIVGGGGYPASNDTWDIYIKGDTKTVLNNTIARWTYGGSFSGVVEG NTSNTLNGGIADTLEGTGYQAARVYGNGQTIVNNGQVDWFLSGGGWNDAKNVGNVGVTVY EGVINASMGASYGASGGHTITGNSDNRIYGGNFSGTPRTGANGFSGGITNAGSLLGNAKL LIDLRNYNGEFKLPGNTYITGGRPYGQNTTLGTDESNTITLNIFTKTGVESLNGASIYGD GGTNAAYTKNGKITMNIQAAGSSIGNLYATQYSNISGGKILRDVTANVQGAVSINGLSGG SSTDNFTNAIVNASSNKVAFNFGTNVDGTNNYQTEPLNATGLGVVNFTELNVTNGIKLMA NGGNIKNGVSATAANHSTTYNEFGSIHLSKNAGIGITNTANLISASKLTVQDHATLETIP GTGKVNIADFEAVDPTKDELLWIKPTTDTTALVDSTGTWFGNVKAYQVLTINPTVNNATK LTPTTFHGIEKATGKTFIGDNDVTKGANGYGIAIPGSIIDYEVEMPGIVAGAGTISHDVK EVKAGNAPLTLQAWGTEVAGQKVQKGRLMIPTSSALTPTLSFLPDEVTGSWLHQGTVKSS EVGSAIEQIPEQKDTTPLSWKATNMNYSYQVKVQFSNKVELSGQSVIVTEDEAAQLTTVD KVIEMLGAKGRPFFKTSLKETDLPQIQAPLAEKTVSRTHDIQLEAGTSGDNLQNKTVHLV VVKNESVLAKDRSFALYATSAHLKLKEANGLTNSDELAQWTQATVIFADGRANQTPSLDA ATFQAIQQAKPEELAKTVPANYQFTEAGETLNKKVNVSISGELTLEKVPKTIDFGKQKIS AKPEVYWPTLSDDLVVQDTRGTESTPWKLNVQVTNPLTNGTDQLEDLSLVTDKGEFLLNK GDTVVTENEGSGSGSYTINQGWGAANQRGLKLSVPVEKQKVGEFKGTLSWSLVMAP >gi|307679204|gb|GL457043.1| GENE 44 49534 - 49923 202 129 aa, chain + ## HITS:1 COG:no KEGG:EF3187 NR:ns ## KEGG: EF3187 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 129 1 129 129 212 100.0 3e-54 MKKYLLLSCFLGLFSFCHSDTAFGEAAYENSGVVSFYGTYEYPTEESTTATSNSSTTTEP TKPADGGASSVLSSGVYGSRQGRLPATGTTNQAPFIYLGISLITIGILFIKRRREDEKNS ISSSRDCRI >gi|307679204|gb|GL457043.1| GENE 45 49880 - 50614 1081 244 aa, chain + ## HITS:1 COG:no KEGG:EF3186 NR:ns ## KEGG: EF3186 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 244 1 244 244 406 100.0 1e-112 MKKTVLAVVGIVGFSGVLATQQAFAEDINVNYTSNGAITFEPDTDPTKPVNPTNPDEKVE PEDPTDPTGPKPGTAGPLSIDYASSFQFGAQKITSDTKDYYAQIQTFKDGTTGPNYVQVT DKRGTQEGWTLSAVQNGQFKTAQNEELVGAALSIANAGVTSIVDAAYAPTPTAAHTFVPG TEVELVKAEDGKGMGTWVYRFGKDATEGATAVKLNVPGKAIKLAKEYRTTLTWTLKSVPT NVGG >gi|307679204|gb|GL457043.1| GENE 46 50619 - 51419 941 266 aa, chain + ## HITS:1 COG:no KEGG:EF3185 NR:ns ## KEGG: EF3185 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 266 1 266 266 457 99.0 1e-127 MKKTVVYSLLFGTMLLGATVPAEAATVVFDSEQSIVFTPSTDGTDPVNPENPDPEKPVRP VDPTNPDGPNPGTPGPLSIDYASSLDFGSNEISNKDQTYFARAQTYKNPDGSASELATAN YVQVSDLRGTNAGWVLKVKQNGQFRNAETLHKELTGATVAFTEPSVRSNATDVLPPTATA NIQLDAAGAETVVMQAPEKTGAGTWITLWGQAEKVTEKNQQGQQVNATITRAISLTVPGK TPKDAVQYKTTLTWLLSDVPVNNGGK >gi|307679204|gb|GL457043.1| GENE 47 51420 - 52178 1103 252 aa, chain + ## HITS:1 COG:no KEGG:EF3184 NR:ns ## KEGG: EF3184 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 252 1 252 252 366 99.0 1e-100 MKKTKVMTLMATTTLGALALVPMSALAVDGGEYQTNGAIQFAPNTNPTNPVDPTNPDPDK PITPVDPTDPTGPKPGTAGPLSIDYASSLSFGEQTITSKNMTYYAETQKYKDNAGADQEG PNFVQVSDNRGTETGWTLKVKQNGQFKTEANQELTAAKVTLSNGRVVSASQSAKPTTAPA TIELNPTGAESVVMAAGDKEGAGTYLMSWGDSVDAAKTSISLEVPGSTTKYAKKYTTTFT WTLTDTPANTGN >gi|307679204|gb|GL457043.1| GENE 48 52290 - 53366 1145 358 aa, chain + ## HITS:1 COG:no KEGG:EF3183 NR:ns ## KEGG: EF3183 # Name: not_defined # Def: cell wall surface anchor family protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 358 1 358 358 635 100.0 0 MNRWKVYATVIACMLFGWIGVEAHASEFNFAVTPTIPENQVDKSKTYFDLKMAPGAKQTV EIQLRNDTDEDITIENTVNSATTNLNGVVEYGQNGIKPDKTLRFNLKDYVEAPKEIILPK HSQKTLPLTITMPKDSFDGVMAGGITLKEKKKETTTSADQSKGLAINNEYSYVVAIILQQ NETKVQPDLKLLGVKPGQVNARNVINVSLQNPQAAYLNQLHLINTVSKGGETLYQSDTED MQVAPNSNFSYPISLKGERLTPGKYVLKSTAYGVKDEKGTYQVKGANGEERYLYKWEFTK EFTISGDVAKELNEKDVTIKGTNWWLYLLIALIILALLLLIFFLYRKKKKEEEQQSEQ >gi|307679204|gb|GL457043.1| GENE 49 53468 - 53953 512 161 aa, chain + ## HITS:1 COG:no KEGG:EF3182 NR:ns ## KEGG: EF3182 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 161 1 161 161 219 100.0 3e-56 MRKKYLFLFSSLLIFTAVEIEPIQTLATPIYNPLEPTEEIQPKPESITPQEKSEPEQPAP TPPEDQKTTVPSEEKKPSPKKKDKPVEKPAMSKEKKKQTKETTAHPLQVNKDFVFPNGLG AGGDEESESYLAAVGYFLSGNGLYGKKMDVREVYDIDDVFK >gi|307679204|gb|GL457043.1| GENE 50 53937 - 55388 1019 483 aa, chain + ## HITS:1 COG:no KEGG:EF3181 NR:ns ## KEGG: EF3181 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 483 1 483 483 867 99.0 0 MMFLNKVDKRKIALFQLLENAPMLTESKETVMQELELSEFIVNKTVAELNADFIEFGLSE DFQIVSDGIFLTLNESGTETSATLIDCYIKESLRFAMFQDFFFQRFDSVNEFALEHFVSH TLAYKEFKELKKMLENYQITINKEFHLVGNETNLREVTTLVFLQLYQRDFSLYGKKVLEQ IRNFELFFSEKVHLNQRAGYAQAKCFHFLAVSLVRTQQQFYVEKKVDSQVLKQLAGDNQQ NVFNWLESLQIPEPQRTNEGNYLLLFLIAEEWLQVASAALCQRFAEIQQLNRDLLSYLKI QFQLSEEVLQGFEQKVTIVHFKLFHFPIEANYSYRKMDVTYFAETYTEYFSASRQFIQEQ KANPAVWDARQFLFYRYLLLMVDALPLKKVLAPITLCVDFSFGEAYNRMIQKNIEKITEW NIIFKAHVDESVQLILSDIHFVDWPEITQIIWLAPPRPVDWSHFIKTLSALRPHSGEEKK KSS >gi|307679204|gb|GL457043.1| GENE 51 55509 - 56006 520 165 aa, chain + ## HITS:1 COG:BS_sigV KEGG:ns NR:ns ## COG: BS_sigV COG1595 # Protein_GI_number: 16079766 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Bacillus subtilis # 7 161 2 157 166 88 33.0 6e-18 MVFDGWKRKKQIRALETLVDTKYEKMYRIAFNYTHSKEDALDVIQESFEKALKAIQKGPD IKDFEAWFFRILLSVATDYWRKKKREAVHIEKDEHVLALLNNPQRSFLEIEEIINQLDSP NREIILLKFFEGFTLKEIALILDINENTIKTKMYRSLNELRSLLN >gi|307679204|gb|GL457043.1| GENE 52 56031 - 56915 777 294 aa, chain + ## HITS:1 COG:no KEGG:EF3179 NR:ns ## KEGG: EF3179 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 294 1 294 294 528 99.0 1e-148 MEDFVKSVVKNFSKEYRQQPLPTDLQAEVKARFHKEKKRYTWLRFRNRSLQSSVVVACGF VLSVNLFPGFSEAARNIPVLDKIVQLVTIKTLTAKKQESEVNIDVPKIQTSQESSVADTL NKKYLKEAQTEFQQVKGQLFDGSRVSVTGDYEKVVDDRRFLVVKRTFTEIKGSSATTTKY DTIDKRANVVVSLPLIFKNDFYIDVISSEIKQQIADQMKNDSNKIYWSEKEDAPSDVQPF KKIKKDQPFYINEKHQLVIVFPQGEIAPYYMGTPEFVIPNQVIENELAAPNYLK >gi|307679204|gb|GL457043.1| GENE 53 57045 - 58181 1497 378 aa, chain + ## HITS:1 COG:lin0289 KEGG:ns NR:ns ## COG: lin0289 COG0624 # Protein_GI_number: 16799366 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Listeria innocua # 1 377 1 378 378 381 55.0 1e-105 MEKSEKISILQDVVKIKSVNGNEEEVAIYLQNLLKKYEIPSELVSYAPNRSSLVAYLGEN REKVLGFSGHMDVVSEGDESQWTFPPFAAHIEGNKLYGRGATDMKSGLVAMVLAMIELKE KEVPLNGAVKFLGTVGEEVGELGAGQLTEKGYADDLSALVIGEPTNYNLMYAHMGSINYS VVSHGKEAHSSMPEEGINAINNLNEFITEANQQMAEVTANYENPELGRTIHNVTVIKGGT QVNSIPGQAALQGNIRSIPEFSNDQVIALLQKIVDELNKKEKHQLELTIDYNKIPVKAEK DSALIQAIQAQFDQPLPLVTSAGTTDLAEFTKSDNTFDCVVFGPGVTTTAHQVDEYVEID NYLDMIDKYQAIAKSYLN >gi|307679204|gb|GL457043.1| GENE 54 58235 - 59026 785 263 aa, chain - ## HITS:1 COG:no KEGG:EF3177 NR:ns ## KEGG: EF3177 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 263 1 263 263 487 99.0 1e-136 MDLHLTVDLKKTKTLIDLADQAHLIIEQTTKLPKKEAAILFLLRDNQLVALGLAEEKATY KEVSFDHSILLKPTWDTELAYLAQAFLDDAKESGLTLEATPTTVKIPKSAVATVTNYKET VTFILERFGYSLFKKPAPKKARPAKARHKWTKEVSQIPFYIDTRQSKATVFWQKRNEMLI KAGATMMPEAPLNKDGSVGFSARFGEKLRDERKGQFKDFVTMEDIVLKSVNEVGLFLYFA GTNSWLELVDENGKTLNEWTVVE >gi|307679204|gb|GL457043.1| GENE 55 59063 - 59158 56 31 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYVSKYTTKASFCFKQYCKVADSLKDEDAVS >gi|307679204|gb|GL457043.1| GENE 56 59190 - 59573 325 127 aa, chain + ## HITS:1 COG:VCA1051 KEGG:ns NR:ns ## COG: VCA1051 COG3304 # Protein_GI_number: 15601802 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Vibrio cholerae # 1 119 2 130 143 97 45.0 7e-21 MKTLGNILWFIFGGFFGGLSWLFAGVIWCITIIGIPIGLQCFKLAGLSFWPFKKRVVYSD SGVSLVVNIIWLIISGLPLAIGHCISGLLLCLTIIGIPFGQQSLKLAKLALMPFGARVVS TNDFYFE >gi|307679204|gb|GL457043.1| GENE 57 59662 - 60087 578 141 aa, chain + ## HITS:1 COG:BS_ywnA KEGG:ns NR:ns ## COG: BS_ywnA COG1959 # Protein_GI_number: 16080716 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Bacillus subtilis # 3 135 2 132 133 116 50.0 1e-26 MAMSTKLSVAIHILSLIETGPQEQVTSEYIASSVNTNPVVVRRLMSQLKKAGLIHSMRGA NKNTLLKKPEEISLYEIYTAVELEREIFNIHQNPNPNCSVGANIQSVLETEFTKVQQKME EELKSITLADVIHEIEVKRDK >gi|307679204|gb|GL457043.1| GENE 58 60155 - 60775 883 206 aa, chain + ## HITS:1 COG:BS_ywnB KEGG:ns NR:ns ## COG: BS_ywnB COG2910 # Protein_GI_number: 16080715 # Func_class: R General function prediction only # Function: Putative NADH-flavin reductase # Organism: Bacillus subtilis # 1 204 1 208 213 192 50.0 3e-49 MKVAVLGATGKEGQLLLAEAKRRGMDVTAIVRNASKITDGTPTIEKDVYQLTTEDIQAFD VLISALGFPDVQDFPKSTKHLIEILTNQKTRLFVVGGAGTLYVDPEHTTQLKDTPSFPAE IQPLASAMGEALNLLKEAQNIYWTYISPAAMFDAEGPATGHYEVAGEELTTNSQGDSYIS YADYAVAMLDEVESNAHPNQRISVYQ >gi|307679204|gb|GL457043.1| GENE 59 60854 - 62059 1528 401 aa, chain - ## HITS:1 COG:no KEGG:EF3173 NR:ns ## KEGG: EF3173 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 20 401 20 401 401 461 99.0 1e-128 MSVVLGLLGLLGLLVSGGLTIKALIKKQPKKQYGYAALASAALFIGGVATTDSSPTLSLD AESVETDANGSATIKGEYDGNSKLTANGKEVKTKDKTFAYKVKLSDENTQKITFVAEKKD TKVEKSVEVTPSKEFIASITDSEQELAKTEKALAYAEKQPSQKNYDEAATLVSSLSQEYE EYNDRLEKIKEAVPVDEAVTTAEKSKSKSDYQAAEKLVAAAPVGKEGFQQRLTTVQTAIA EKEKNEQLVASATAAVEKAEQEPTNEAYYNEAIKQIDALNSPNQALTKRVAVVKTQLDAH KEKQRKEAEAQKLAAEKAQKEQAEAAAKAQAEAEAQQAAQAPAEVETAAAEAPSGNALIK GSRNGIYHVPGSRYYNRTTNPVAWFSTVEEAEAAGYRAPKQ >gi|307679204|gb|GL457043.1| GENE 60 62251 - 63495 214 414 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 268 406 759 898 904 87 38 4e-16 MKAEIIAVGTELLLGQVVNTNATFLSEELAALGIDVYYQTVVGDNGGRLETLLTEAEQRS DLIVLCGGLGPTEDDLTKQVVAQHLHKSLVEDQEGLNRLHQFFQQSKRPMTENNLRQVLA IEGGQVLQNPTGLAVGSFVTEGTTSYLLLPGPPNELIPMFQQAARPLLINAFPQEEQLIS RVLRFYGIGESQLVTEIQSLIAHQTNPTIAPYAKPNEVTLRLTVKTKDLVAGEELLTATE EKVLAKVGDYFYGYGDDNSLAKVTVDLLLQNGQTVTAAESLTAGLFQSTLGEIAGASKIF KGGFVTYSQETKENFLGISHELLEEHGTVSEACAKEMAEKARQLAKSNYGLSFTGVAGDP IEGQPTGTVWIGLAEEGQPTIAECFHFNRDRNYIRQSAVMRGLDLLRHRIINKK >gi|307679204|gb|GL457043.1| GENE 61 63609 - 64655 1597 348 aa, chain + ## HITS:1 COG:lin1435 KEGG:ns NR:ns ## COG: lin1435 COG0468 # Protein_GI_number: 16800503 # Func_class: L Replication, recombination and repair # Function: RecA/RadA recombinase # Organism: Listeria innocua # 3 346 2 344 348 508 79.0 1e-144 MADDRKVALDAALKKIEKNFGKGSIMKLGEKADQKISTIPSGSLALDVALGVGGYPRGRI IEVYGPESSGKTTVSLHAIAEVQRNGGTAAFIDAEHALDPQYAEKLGVNIDELLLSQPDT GEQGLEIADALVSSGAIDIVVIDSVAALVPRAEIDGEMGASHVGLQARLMSQALRKLSGS INKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKQGTDIVGNR TKIKVVKNKVAPPFKVAEVDIMYGQGISQEGELLDMAVEKDLISKSGAWYGYKEERIGQG RENAKQYMADHPEMMAEVSKLVRDAYGIGDGSTITEEAEGQEELPLDE >gi|307679204|gb|GL457043.1| GENE 62 64761 - 64856 67 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSEPIHIKQLSQTADYAAFVLKFKQFVTAET >gi|307679204|gb|GL457043.1| GENE 63 65052 - 66608 2137 518 aa, chain + ## HITS:1 COG:lin1436 KEGG:ns NR:ns ## COG: lin1436 COG1418 # Protein_GI_number: 16800504 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Listeria innocua # 1 518 3 520 520 608 73.0 1e-174 MVLNILLAIVGLIVGLGLGFVIAKSRHDKAINGAKISASSILENARKESETLKKEALLEA KEENQKYRSEIESELKESRLELKSQENRLIQREQTLDRKDDSLEKREGSLEEKEEKLGAR QQLIDEREKEVENLINQQHQELERIASLSKEEAKSIIMKSTEEELNHELTLMVKESEQRA KEESDRKAKNLLSLAIQRCAADSVSETTVSVVTLPNDEMKGRIIGREGRNIRTLETLTGI DLIIDDTPEAVVLSGFDPIRREIARMTLEKLIQDGRIHPARIEEMVEKSRKEMDERIREY GEQAAFEVGAHTLHPDLIKILGRLRFRTSYGQNVLNHSIEVAKLAGVLAAELGEDVQLAK RAGLLHDIGKALDHEIEGSHVEIGAELAAKYKENSVVINAIASHHGDVEATSVISVLVAA ADALSAARPGARSESLENYIRRLENLENISNSFEGVDSSFAVQAGREVRVMVKPEEISDL ESVRLVRDIRKKIEDDLDYPGHIKVTVIRETRAVDYAK >gi|307679204|gb|GL457043.1| GENE 64 66768 - 67565 947 265 aa, chain + ## HITS:1 COG:lin1438 KEGG:ns NR:ns ## COG: lin1438 COG1692 # Protein_GI_number: 16800506 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 263 1 264 267 380 67.0 1e-105 MRILFIGDVVGSLGREALATYVPKLKKKYRPQVTIANGENAASGRGITGKIYKKFLQDGV DVVTMGNHTWDNKDIFEFIDDAKKMVRPANFPEDVPGQGMVFVKVNQLELAVINLQARTF MVPLEDPFKKAAELVAIARKRTPLIFVDFHGETTSEKQAMSWFLDGQVSAVVGTHTHVQT NDARILPKGTAFLSDVGMTGPYDGILGMKREPIIEKFMTALPKRFEVVETGRTILSACIL EIDDQTGQAKMIEPIQISEDRPFQE >gi|307679204|gb|GL457043.1| GENE 65 67654 - 68025 629 123 aa, chain + ## HITS:1 COG:no KEGG:EF3168 NR:ns ## KEGG: EF3168 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 123 1 123 123 170 100.0 2e-41 MEPLNLDAQSNKELEKLLHLIGQDEVIQRYQAIEEKVKKNKKLTELVEEIKAAQKDAVQF AHYGKPTAEKEAIQRADAKTKEFDEHPLVVAYREQLIEANDLVQHVTALIQYRVNEELEK EGN >gi|307679204|gb|GL457043.1| GENE 66 68026 - 70602 2913 858 aa, chain + ## HITS:1 COG:lin1440 KEGG:ns NR:ns ## COG: lin1440 COG0249 # Protein_GI_number: 16800508 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Listeria innocua # 5 858 2 859 860 994 60.0 0 MPQKTKNTPMMEQYLSIKAQYKDAFLFYRLGDFYELFYEDAINAAQILELTLTSRNRNAD DPIPMCGVPYHAAQGYIDTLIEQGYKVAICEQVEDPKTTKGMVKREVVQLVTPGTVMNSK GLEAKDNNYLTAVLTDGNQFGFAYVDLSTGELKTAVLADEEGVLNEASALQTKEMVLGSG IPESLKENLSLRLNIIFSTQETVEENAEFSFLTNELINPLEIEITGKLLSYLSVTQKRSL SHIQKAVEYQPDHFLKMDHYSKFNLELSQSIRTGQKKGTLLWLLDETKTAMGGRLLKQWL DRPLIQERQIKARQEMVQSLLNAYFERLDLQAALTNVYDLERLAGRVAFGSVNGRDLIQL RTSLEQVPTIRQLIVGINQGEWDDLLVDLNPVEDLVALIATAINEEAPLQITEGNVIKDG YNDQLDEYRDAMRNGKQWLAELEAKERQETGIKNLKIGYNRVFGYFIEITKSNLANLEEG KYERKQTLANAERFITPELKELERLILEAEEKSVELEYQLFLAVREQVKTNIDRLQTLAK TISAVDVLQSFATISERYQYVRPTLRSNTKNLAIVEGRHPVVEKVLGHQEYIPNSIRMNP ETDILLITGPNMSGKSTYMRQLALTVVMAQIGCFVPAESAEMPIFDQIFTRIGASDDLIA GQSTFMVEMMEANQALRHATPNSLILFDELGRGTATYDGMALAQAIIEYIHREVQAKTLF STHYHELTVLDETLKGLKNIHVGAVEKDGEVVFLHKMMEGPADKSYGIHVAKIAGLPSPL LERAATILSALEAEETTIPSSVHHEEVSEVHEETEQLSLFKEVSTEELSVIDTLKKMNLL EMTPLDALNMLHQLQKRI >gi|307679204|gb|GL457043.1| GENE 67 70634 - 72766 2143 710 aa, chain + ## HITS:1 COG:SPy2121 KEGG:ns NR:ns ## COG: SPy2121 COG0323 # Protein_GI_number: 15675871 # Func_class: L Replication, recombination and repair # Function: DNA mismatch repair enzyme (predicted ATPase) # Organism: Streptococcus pyogenes M1 GAS # 1 710 1 651 660 680 52.0 0 MGKIQELSEQLANQIAAGEVVERPASVVKELVENALDAGSTQIDIFIEEAGLKTIQIIDN GEGIAKEDVLNAFKRHATSKIHTRDDLFRIRSLGFRGEALPSIASVSEMIVETATAEEEE GSYVILKGGKVEENRPAALRKGTKMTVSNLFYNTPARLKYVKTIQTELANIGDIVNRLAL SHPKVAFRLVHDGHKMMSTTGNGDLKQTIAGIYGISTAKKMLKIEGKDLDFTLTGYVSLP EVTRASRNYLSTIINGRYIKNFALNKAIVAGYGSKLMVGRFPIAVLEIEMDPLLVDVNVH PTKQEVRLSKEKDLMALIEQAIQEVLSQEQLIPNAADNLRFKKKLPPEPKAEQMEIPLST EQPAVKQRPGSLSYNPATGRFYAEHATDETPASSAPESVNQTERAVDPMDDPFAPPVPES TSVAEETSAYETSSAAVDSANHWETASNEQQVIAEETKITEVSDSEPSLRSSEAADEVFQ EEMKLHPEFDANSAASQRELKQALNKLEEERPTERFPELEYFGQMHGTYLFAQSKDGLFI IDQHAAQERIKYEYFREKIGEVSDDLQELLVPIVIDYPNSDALKIKEQKETLAEVGIHLE DFGQNSFIVRAHPTWYPAGEEESIVREMIDMLLTTGSVSVKKFREATAIMMSCKRSIKAN HYLNEQQARVLLKDLALCENPFNCPHGRPVLIHFTNSDMERMFKRIQDPH >gi|307679204|gb|GL457043.1| GENE 68 72791 - 73345 571 184 aa, chain + ## HITS:1 COG:BS_maf KEGG:ns NR:ns ## COG: BS_maf COG0424 # Protein_GI_number: 16079857 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Nucleotide-binding protein implicated in inhibition of septum formation # Organism: Bacillus subtilis # 3 184 5 186 189 167 46.0 1e-41 MQIILASQSPRRQELLKRVVPTFTIAPADIDETVGKDGLPAEYVAQMAAQKAAAIAEQSP EALVIGCDTIVALAGEILGKPTSREDGYRMLRLLSGKTHDVYTSVTLKQGEKERSATVHS TVTFYPLTDTEIHAYLDTAEYADKAGAYGIQGQGALLIEAIAGDYYAIMGLPIAKVARLL KEFN >gi|307679204|gb|GL457043.1| GENE 69 73478 - 73915 505 145 aa, chain + ## HITS:1 COG:SPy1055 KEGG:ns NR:ns ## COG: SPy1055 COG0229 # Protein_GI_number: 15675047 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Conserved domain frequently associated with peptide methionine sulfoxide reductase # Organism: Streptococcus pyogenes M1 GAS # 5 144 3 142 145 194 65.0 6e-50 MTKPTEEELKQTLTDLQYAVTQENATERPFSGEYDDFYQDGIYVDIVSGEPLFSSLDKYD AGCGWPSFTKPIEKRGVKEKADFSHGMHRVEVRSQEADSHLGHVFTDGPLQEGDLRYCIN AAALRFVPVADLEKEGYGEYLSLFK >gi|307679204|gb|GL457043.1| GENE 70 74090 - 75061 1176 323 aa, chain + ## HITS:1 COG:lin0238 KEGG:ns NR:ns ## COG: lin0238 COG0462 # Protein_GI_number: 16799315 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Listeria innocua # 1 319 1 318 318 464 75.0 1e-130 MSKHYFDPRLKIFSLNSNRPLAEKIADAVGVELGKCSVTQFSDGEIQVNIEESIRGAHVY VIQSTSSPVNDNLMELLIMIDALKRASAKTINVVMPYYGYARQDRKARAREPITAKLVAN MIEKAGATRMLTLDLHAVQIQGFFDIPVDHLMGAPLIADYFIEHGIQGDDVVVVSPDHGG VTRARKLAEFLKAPIAIIDKRRPKANVAEVMNIIGHVEGKTCVLIDDMIDTAGTISLAAN ALKEAGAKDVYASCTHPVLSGPALQRIEDSAIERLVVTDSIYLSDDRKIAKIDEVSVGEL IGDAIKRIHENKPVSPLFETKNK >gi|307679204|gb|GL457043.1| GENE 71 75299 - 75442 156 47 aa, chain + ## HITS:1 COG:no KEGG:EF3247 NR:ns ## KEGG: EF3247 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 47 19 65 65 78 95.0 1e-13 MSVLPKFTERRGLLSAYETIQTILGFGMFTIALIALIVKLLKNDKKK >gi|307679204|gb|GL457043.1| GENE 72 75682 - 76275 296 197 aa, chain - ## HITS:1 COG:no KEGG:EF3160 NR:ns ## KEGG: EF3160 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 51 197 1 147 147 282 99.0 4e-75 MIEKKDFDTIRKAFLIYDTNFNNHMFTYTYQHRKTKKLLEMNVQFEAGNFMHLCGVDYYQ IDKQGSCKFRFKATQFYRALKNNKVSLRGIKPKDDGTTGQKLQVIPLLEMLISPGVRVCD GGKFYNLQYEKAIRSGKMIVALTCKENNKKYVPQSLLSLINQPRKSQSKSLTESHEVIKI SKSELNSTSVIEVYDKF >gi|307679204|gb|GL457043.1| GENE 73 76695 - 77345 811 216 aa, chain - ## HITS:1 COG:BS_yvdM KEGG:ns NR:ns ## COG: BS_yvdM COG0637 # Protein_GI_number: 16080508 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Bacillus subtilis # 6 213 5 212 226 197 48.0 2e-50 MTIGFIFDLDGVITDTAKFHYQAWKALADSLGIPIDETFNETLKGISRMDSLDRILAHGH RENAFIPAEKEALAQQKNDHYVQLLEHLTTEDVLPGVVPLLQQAQARHIPCAVASASKNA PLILEKLGVRAYFATIVDPDSLSKGKPDPEIFLAAADSIGVLPQNAIGFEDAQSGIDGLK AAGIYAVGLSASQPLIGADMQVSEMTELSVDALLNR >gi|307679204|gb|GL457043.1| GENE 74 77360 - 80071 2248 903 aa, chain - ## HITS:1 COG:L39593 KEGG:ns NR:ns ## COG: L39593 COG1554 # Protein_GI_number: 15672410 # Func_class: G Carbohydrate transport and metabolism # Function: Trehalose and maltose hydrolases (possible phosphorylases) # Organism: Lactococcus lactis # 118 880 6 746 769 518 39.0 1e-146 MTILELTFATNQLTTTFFNHKLEPLHQKTFPFEALTIEETVPELCQLIVAEAAPILGGIV ADFPADFFSPEETLALVPQAVIQAFAEQLNTPLLTAAEQAAAPNLLAAFEEKRQYLAWHL DYYGYVPGKNEYAVESLLTVGNGFLGLRGTTPEMTISDDHYPATYIAGLYNTAASEVAGQ VVENEDFVNAPDNQHIALKIGDATDWLTISPDTLQQLHRQLNLKTGLFVAEMILKDADNQ QIKLTTKKIANMAQPNDYHLQYTFEPLNFSAPITLKTVTDGSVYNYNVARYRNLTAKHFQ VTALSAQENKTVIEVCTNQSNLSVRETALITGDFFEKEAIMIQEEAEKIAQVVTVMAHQG TRYTLEKQVFVQASHAEQSWQVPFTPKDSFAAAAQESARAWQTLWQQANITVTGDLMSQK LLRIHSYHLLASASPFSNQAQALDVSITARGLHGEAYRGHIFWDEIFILPFYIQHYPDTA KQLLLYRYHRLEKAKENAAASQYRGAMYPWQSGRDGRETTQKLHLNPLNGHWGEDHSILQ RHVSLAIAYNAWLYWHSTQDHEFMKQYGGEMLLEIAQFWNSAATLDDATGRFFIDKVMGP DEFHEGYPDQAESGLKNNAYTNLMVVWLFEELTNILALFSEEEQAQLFAKTQTSSADLAR MQQIQNSLEIEVNSDGIIAQYEGYFGLKEIDWAAMKEKYGNIYRMDRILKAEGESPDDYK VAKQADTLMLFYNLDKTRVDQILEDLGYQLPADYLEKNLLYYLKRTSHGSTLSRIVHAQL AEMAQFHELSWQLYQEALYSDYRDIQGGTTAEGIHTGVMAATIHVTLATYAGVDTRQNEL SICPNLPEHWQALAFQFIHQGVTYQFSLTQTSVTITADKDTQLLVQGALIPLTAERPKEV HYQ >gi|307679204|gb|GL457043.1| GENE 75 80366 - 81079 698 237 aa, chain + ## HITS:1 COG:lin1221 KEGG:ns NR:ns ## COG: lin1221 COG2188 # Protein_GI_number: 16800290 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 2 235 5 237 237 228 52.0 9e-60 MNKFHDIFLELEQQIVQGDYQPGDLLPSENQLVETYNVSRETIRKALNLLINAGYIQKKQ GKGSIVLNFKKFNFPISGVTSYKELQQTQHIESHTHVVSLEEIPVERNLAQLTGWTEGAP VWRLVRQREIEGEVDILDIDYLIKEIVPELPKHRAEDSIFDYLENDLGLAISYAQKEITV EPLTEMDKQLIGEVEGNHVVVVRSIMNLEDTRCFGYTESRHRLNKFKFVEFARRRKL >gi|307679204|gb|GL457043.1| GENE 76 81475 - 82185 712 236 aa, chain + ## HITS:1 COG:no KEGG:EF3154 NR:ns ## KEGG: EF3154 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 236 1 236 236 305 71.0 1e-81 MKKKIMASLLVGSAVVGASLAPLSAQAVTTGNTPVQVEFGGGMLPDAGGDPNTVRPDPGA TNSNFDLIFIPREYDFGKLSISDDLTKPIPNKNDAGRNGHTEAIGIGDLRGTKEGWHVTA QSDGMKLGDESLEGNITIGVNGFYALRYDESTNQYTNQGATIDMEARPEGVNPDLWNLPL AGDAVLVANATSGKGQGIWGLSMFDTALNITTSAYNIKAGAYTGNITWNLVAGPSI >gi|307679204|gb|GL457043.1| GENE 77 82281 - 82997 850 238 aa, chain + ## HITS:1 COG:no KEGG:EF3155 NR:ns ## KEGG: EF3155 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 238 2 232 232 199 51.0 1e-49 MKKKIMASLLVSSAVVGASLAPLSAHAVTTGNTPVQAEFEAGVLPDQGDNTVGMGSVDPD PTQPNTDFDLVTIPRSFDFSPVKIGEDLTSIQAIFPSYETTRAVMVGDLRGTKEGWHVTG QLTKMNNEADELAGDINFGLEMNYAKHVTIPTDFYTVSPVLNGMNIADDPAAPSAIGTSI KIGGGATALMNATVGKGQGIWAGRFRNMTLNVTTPMQQLKKGAYTGNITWNLVAGPSI >gi|307679204|gb|GL457043.1| GENE 78 83038 - 83490 822 150 aa, chain - ## HITS:1 COG:mlr5692 KEGG:ns NR:ns ## COG: mlr5692 COG1970 # Protein_GI_number: 13474738 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Large-conductance mechanosensitive channel # Organism: Mesorhizobium loti # 1 134 18 157 157 96 43.0 2e-20 MIKEFKEFIMRGSVLDLAVGVVIGSAFTAIVTQVVEGLITPLISLIFVLTTGKKSADDAL GALVYKVEGVEFNIGSVISALITFLITAFVLFLIVKAANKMKNRGKKEEAAEEEEVVPTS EDYLKEIRDLLAAQTPPAETVKTDSTFTEK >gi|307679204|gb|GL457043.1| GENE 79 83699 - 84967 1283 422 aa, chain + ## HITS:1 COG:L32666 KEGG:ns NR:ns ## COG: L32666 COG0612 # Protein_GI_number: 15673955 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Lactococcus lactis # 11 421 2 408 418 313 44.0 5e-85 MSVQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHETITKRTLLSSLMETNSLNYPNQVKL SERLAELYGASFGIGVSKKGNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQ AGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVYFNQSEDQKIPSFGTVAALAKE TAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLFKQLPFTPREEGKAAIFYNQPIRNVI EERTEREVLAQSKLNLAYNTDIYYGDSYYFALQVFNGIFGGFPHSKLFMNVREKEHLAYY ASSSIDTFRGFMTVQTGIDGKNRNQVLRLISTELENIRLGKISELEIEQTKAMLKNQYIL ALDNAGAWLEKEYLNQLMPQTMLTAEEWIARINAVTIPEIQEVAKRLELQAIFFLEGETE ND >gi|307679204|gb|GL457043.1| GENE 80 84960 - 86264 1445 434 aa, chain + ## HITS:1 COG:lin1430 KEGG:ns NR:ns ## COG: lin1430 COG0612 # Protein_GI_number: 16800498 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Listeria innocua # 1 429 1 427 428 451 55.0 1e-126 MIKKDYAQIKETLYTETLENGLKVYLLPKNDFQKTYGLFTTDYGSIDNTFVPIGQEEMIE VPDGIAHFLEHKMFEKEDGDVFQKFGQQGASANAFTSFTKTSYLFSTTDQVTQNLETLLD FVQSPYFTKETVEKEKGIIGQEIQMYLDDPNWRLFFGILGNLYPKHPLHIDIAGTVASIA EITAEDLYTCYNTFYHPSNMTLFVVGKMDPEALMAFIRENQAAKEFPAAQPIRRHFPEET AADIVKESAIEMAVTRAKVLVGLKGLDEVPTTGRDLMKYQVTVNLLLQLLFGNTSQNYLA LYDEGLLDDSFSYDFNLDRSFHFADIGGDSEQPEVLAERIEAILLSATTSPELTEENLSL LKKKMIGKYFQSLNSLEYIANQFSQSLFGETTLFDKIEVIESIQLADVRQVAETLIREEG LSRFYMYPKGETEQ >gi|307679204|gb|GL457043.1| GENE 81 86432 - 87298 891 288 aa, chain + ## HITS:1 COG:lin1432 KEGG:ns NR:ns ## COG: lin1432 COG1426 # Protein_GI_number: 16800500 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 6 285 4 299 311 99 27.0 9e-21 MASVNIGETLKEARLQKNISIDELQQMTKIQKRYLEIIEQNDFESLPGTFYVRAFIRQYA SAVGLDGNQLVDIYDGKEPAIVEEPKPVYEELEGSRKQLHDEEKQSSWLLRNLPAIAFSL IGLAIAVVVLYIMWQDQKAEPIIQTPATSASVEKPKESSQAPESSTQSSTPPSSSSEPEK KTAVAVVSDANNQVTATVKDANSPINITFKGTEGSCWIGVMVDGNYTYQHTLQAGETQTT ALPANAANATLILGASNNVAIQVDGADLTLEKTPVLIRKDVTLGITYR >gi|307679204|gb|GL457043.1| GENE 82 87423 - 87635 174 70 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|255970662|ref|ZP_05421248.1| ## NR: gi|255970662|ref|ZP_05421248.1| predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] hypothetical protein CUI_2058 [Enterococcus faecalis PC1.1] hypothetical protein HMPREF9498_02637 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9521_02248 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9505_02294 [Enterococcus faecalis TX0109] hypothetical protein HMPREF9504_02348 [Enterococcus faecalis TX0102] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis JH1] hypothetical protein CUI_2058 [Enterococcus faecalis PC1.1] hypothetical protein HMPREF9505_02294 [Enterococcus faecalis TX0109] hypothetical protein HMPREF9521_02248 [Enterococcus faecalis TX2134] hypothetical protein HMPREF9498_02637 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9504_02348 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9501_02433 [Enterococcus faecalis TX0027] hypothetical protein HMPREF9502_01777 [Enterococcus faecalis TX0031] hypothetical protein HMPREF9508_00799 [Enterococcus faecalis TX0312] hypothetical protein HMPREF9516_01962 [Enterococcus faecalis TX1302] conserved hypothetical protein [Enterococcus faecalis 62] hypothetical protein OG1RF_12411 [Enterococcus faecalis OG1RF] # 1 70 85 154 154 115 100.0 1e-24 MLKIVNKKFNLITIFSIALLVMGFLIVGLQLYFYFIYGSKFLDSITLIGMINLGLGYYQL FLKKGKNISE >gi|307679204|gb|GL457043.1| GENE 83 87734 - 88312 331 192 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 5 187 484 668 904 132 40 1e-29 MNLPNKLTVLRIFMIPIFIIIVSVPMDWGTISFGDTTLAVTQLVGAIIFAVASFTDWLDG KIARAQGLVTNFGKFADPLADKMLVMTAFIVLVGQGKVPAWIVAIIVCRELAVTGLRLLL VEHGEVMAAAWPGKVKTATQMVAIILLFINNIPFSALHLPLDQIMLYACLIFTIYSGVDY FAKNKDVFKGSM >gi|307679204|gb|GL457043.1| GENE 84 88559 - 89158 484 199 aa, chain + ## HITS:1 COG:L114370 KEGG:ns NR:ns ## COG: L114370 COG1846 # Protein_GI_number: 15672690 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 39 199 50 195 291 72 33.0 5e-13 MKKTDILNKLLKIAQQPYLIFASSIEEKPDNTFETLKLLASEENVTAGRIAEYLDIKPSS VTQIIKKLESVKAVKRVKNESDARVTFVVLTDKGRESLSTQGNISNGFNEEMFKGFSEEE LESLNNYLERIEKNISSEEFLDKIETIFGDDKNWEHFRKISARYGRAREQMMGHDGFGRF GEFNGEYGGFEGWKRGRRR >gi|307679204|gb|GL457043.1| GENE 85 89158 - 90942 222 594 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 352 580 131 356 398 90 29 5e-17 MAVGGGGKNSHDSIRADKTKFSFKEFLGLIKMTEPNYLLLGIGMIFLVISSSIQVYVPKL ASSLVNNFQKGVDYSLLGKVVGLFIFSALVSALGGTILGIFGENVIQNMRKRLWNKLTIL KVSYFDSVKAGEISSRVVNDTNQVKQLLAVTFPQTIASVITVIGTVYMMIKMDWHMSLAM VIAVPVVILCMIPVMAFGSKVSHIRQDAMSQFNGLATETLSEIRLVKTSNAESQAQVRAA NEVDRLFNVGKKEAIFDASMQPIMMMVFMSMVFGLLAYGMHRIAIGVMTIGTLMSFLMYL FNLIGAMPIIATLFSEVAKAAGSTRRVQELLSREPEDFESGQDIDLSEKTLSVKNVKFSY EDAPEEPILTDISFTAQPNQVIAFAGPSGGGKSTIFSLIERFYEPTEGQIKFGDIDIKDI KLSDYRRQIGFVSQDSAIMVGTIRDNLTYGLAENFSDEQLWDVLELAYARKFVEEMPDKL NTEVGERGVKISGGQRQRIAIARAFLRNPKILMLDEATASLDSESEMKVQEALSNLMKGR TTLVIAHRLSTIVDADSIYFVEKGKVTGSGKHDELVSKHKTYAKYVSEQFKVTE >gi|307679204|gb|GL457043.1| GENE 86 91200 - 92087 610 295 aa, chain - ## HITS:1 COG:L54944 KEGG:ns NR:ns ## COG: L54944 COG1737 # Protein_GI_number: 15674168 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 6 288 5 280 282 150 33.0 2e-36 MKNHYLDQRIRIKKPNLSLTEKKISDYFVHSESLLTQMTLESLANEIGVSQSSVYQFVKK IGYSGFQEFKIDIARNSNYQPTFQNVNSVNGADDISPDDDSITIAKKVLQANIYSLSNAT QFLTKELLDNVLALMYSAKTLHFFGQGGSSIVAFDSFHKFIRTNYRCNYIFDYHMQLSFV TKLTSEDCVFIFSHSGKTKESINLARQVKKTNAKMITLTGNSGSELAGLSDEAIIVVTEE GLFRAESLASRISYLTVMDILYTNTMHHNFDQNADSLKKIRDNISTTKTDPHYLS >gi|307679204|gb|GL457043.1| GENE 87 92499 - 93398 998 299 aa, chain + ## HITS:1 COG:BH2674 KEGG:ns NR:ns ## COG: BH2674 COG1023 # Protein_GI_number: 15615237 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted 6-phosphogluconate dehydrogenase # Organism: Bacillus halodurans # 1 298 1 298 298 282 47.0 6e-76 MGIGFIGLGKMGLNMALNVHEQGWPIIGFDVTKEARATAREQGLSVVDSLPELLKALNKR KVIFLSTPAGQITNQLVAELVEQLAPEDIIVDSGNSNFHDSVANAQLAEEKGIYFIDCGT SGGIKGAREGACLMVGGAPEAVKVLTPFFEDLACEQGYLYAGKSGAGHYLKMVHNGIEYV MMQAMGEGFNLLEAAEYDFALEKVADVWNHGSIIEARLMGLAKEVFAENPTLANLEGKVA ANGEAKWMIEEALRLEMPVPTTALSLFTRNESMLANHFSNKVVASLRQGFGGHEVVKSQ >gi|307679204|gb|GL457043.1| GENE 88 93411 - 94412 907 333 aa, chain + ## HITS:1 COG:AF0813 KEGG:ns NR:ns ## COG: AF0813 COG0111 # Protein_GI_number: 11498419 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Archaeoglobus fulgidus # 37 325 26 311 527 170 35.0 4e-42 MLKKQKIAIVNSSSFGQIFPEHLTRLEKIGTVKHFTVDSEIGGKELAECLQGYTIIIASV TPFFTKEFFEHKDELLLISRHGIGYNNIDLDAAKQHETIVSIIPALVERDAVAENNVTNL LAVLRQTVAADASVKADQWEKRANFVGRTLFNKTVGVIGVGNTGSCVVETLRNGFRCDVL AYDPYKSATYLQSYGAKKVDLDTLLASADIICLCANLTEESYHMIGSAEIAKMKDGVYLS NSARGALIDEEAMIAGLESGKIAGLGTDVLEEEPGRKNHPYLAFENVVMTPHTSAYTMEC LQAMGEKCVQDVEDVVQGILPQRAVQEVSRYVS >gi|307679204|gb|GL457043.1| GENE 89 94427 - 95533 1106 368 aa, chain + ## HITS:1 COG:lin1848 KEGG:ns NR:ns ## COG: lin1848 COG0371 # Protein_GI_number: 16800915 # Func_class: C Energy production and conversion # Function: Glycerol dehydrogenase and related enzymes # Organism: Listeria innocua # 4 361 5 358 368 250 37.0 4e-66 MLTDLKVKVGPQFYRYHEGALASVPSLFKEYHAQRILVVHGAVSFEKAQPFLPFLADSEY QFFYHTYTGECSYFGAEQISQQIKEHQIDFLLGVGGGKLADLVGYSAHLNNLNFGLVPTL ASNCAPWTPLAVMYQENGAAEGKTEHFFRQAAFLITDPKLLLDAPRDYFVAGLADTLAKW YESETILRQAHLQGEPFLQLAGATAKLSQEAIMRDSKSALAAMDEGKLTPEFVHLSEIVF AVSGLVGGFGDKYARNAAAHAMHDAMSKFLPKSHDYLHGEKVAYGIFYQLALEKRWAIID ALIPFYQELNLPMSLRQMGLYPEEEAVLDTMVQFIDSKEKVHLIPIEISEERLRQGIEEL EKYIQNQG >gi|307679204|gb|GL457043.1| GENE 90 95546 - 96382 876 278 aa, chain + ## HITS:1 COG:STM3770 KEGG:ns NR:ns ## COG: STM3770 COG3715 # Protein_GI_number: 16767054 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Salmonella typhimurium LT2 # 34 256 30 249 249 119 33.0 5e-27 METLSVLQSLIMALWVAAIMSRWLGGGATLTLRFSPLMTGLVAGLVMGDVPKAMIVTAAL QMIYMGVFSPGGSMPAEPSIAAAIAVPVALLGNLKPEAAIAVAVPVGLLGSYLYQFRFFI NTFLGKYTDRAVAELNSKKIARSIIWYPTIASFILFVPLVFFALYLGAPVIADIIKALEG TVVIHVLEVVGGGLAAIGIATTVYVIGRKDFLVFFFLAYFMSIVFKSLEITMVTYAIFGV IIALIFVQVQKGKPVAESAGSASATTDFDDDDDYDDGF >gi|307679204|gb|GL457043.1| GENE 91 96403 - 97275 1169 290 aa, chain + ## HITS:1 COG:STM3769 KEGG:ns NR:ns ## COG: STM3769 COG3716 # Protein_GI_number: 16767053 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Salmonella typhimurium LT2 # 20 290 21 286 286 168 36.0 1e-41 MTETTEKVVPKTTNLAPEEITNKDVTKAYLRWHFANEIPHSFERYLAPSLLYAMMPLLKK LYKDDEQLKAAYMRQLLFFNTQLSWGGGVITGLMASMEQERAKEEHEGREIMMQDDLMYN TKAGLMGALAGIGDAIDSGTVQYIFIAIAVPWAQQGSALGAIFPFVAFALYQVLLGVFFA RQSFKMGRNATGLMQSAGIQKAIEMLSVLGLFMMGILAGNYVKVSSTLQFKLSGREFVVQ DILDQIVPGLLPLAVVMGVYWFYTKKGLKVTQALLWLTGILIVLATVGIL >gi|307679204|gb|GL457043.1| GENE 92 97297 - 97803 631 168 aa, chain + ## HITS:1 COG:ECs5001 KEGG:ns NR:ns ## COG: ECs5001 COG3444 # Protein_GI_number: 15834255 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Escherichia coli O157:H7 # 4 151 3 147 164 67 30.0 1e-11 MGVVNLARVDERLIHGQVMVTLSQKSGVNSIFVVDEVVAKDKFMRDLYKSAGSRTGQKTI VITPEKAKFYWDEYQFKEYNCILIAKTVSVIYDLVKHGVPMKELNIGGIAQKNPEKDLLV TKSVYLNKEDAEKLKELHEVYGVEDIYFQATPSAPKTSLKEVLGKFNL >gi|307679204|gb|GL457043.1| GENE 93 97881 - 98333 704 150 aa, chain + ## HITS:1 COG:CAP0066_1 KEGG:ns NR:ns ## COG: CAP0066_1 COG2893 # Protein_GI_number: 15004770 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Clostridium acetobutylicum # 1 131 1 127 157 71 34.0 6e-13 MLGIVIATHGALSDGAKDAATVIMGATENIETVNLNSGDDVQALGGQIKTAIENVQQGDG VLVMVDLLSASPYNQAVLVINELEPALQKKIFVVSGTNLPMVLEAINHQLLGTPIAEAAQ AIVAQGKESVQAWDISMTSFEDEEDEDDDF >gi|307679204|gb|GL457043.1| GENE 94 98357 - 99430 1127 357 aa, chain + ## HITS:1 COG:TM0069 KEGG:ns NR:ns ## COG: TM0069 COG1312 # Protein_GI_number: 15642844 # Func_class: G Carbohydrate transport and metabolism # Function: D-mannonate dehydratase # Organism: Thermotoga maritima # 1 356 1 358 360 423 55.0 1e-118 MKWGFRWYGAAGDAIPLKHIRQIPGITGVVGTLLNKLPGDVWTVAEIQALKQSVEQEGLA LLGIESVAIHDAIKAGTDQRDHYIDNYRQTLRNLGKCGISLVCYSFKPIFGWAKTDLAYE NEDGSLSLLFDQAVVENMQPEDMYQLIHSQSKGFRLPGWEEERLQQFQELKAMYAGVTEE DLVENLRYFLERVIPVCEEENIKMGIHPDDPPWEIFGLPRITKNLADLKRILSLVDSPAN GITFCTGSLGADPTNDLPTMIREIGHRINFVHFRNVKYLGEHRFEETAHPSVAGSLDMAE LMQALVDVGYEGVIRPDHGRAIWDEKAMPGYGLYDRAMGLTYIQGLYEATKAKQNRK >gi|307679204|gb|GL457043.1| GENE 95 99435 - 100088 788 217 aa, chain + ## HITS:1 COG:VC0285 KEGG:ns NR:ns ## COG: VC0285 COG0800 # Protein_GI_number: 15640313 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-6-phosphogluconate aldolase # Organism: Vibrio cholerae # 12 197 5 190 201 136 39.0 2e-32 METKVEKNQLYQQLATCKLLPLYTATDLRYLPQVESVLVENELPFIEVTFRSQLALPAIK QLAASGNLIVGAGTVRTLKEAQEAVANGAQFIVSPAIVPEVIDFCLANEVPIFPGTATPG EIQRALAYGLRVVKFFPADIYGGLKAIKSLSGPFYDVQFLPTGGIDETNFIEYVEAKEVL AVGGSFILSEKMLQEDEASARQHVQSLLTKIKERQAK >gi|307679204|gb|GL457043.1| GENE 96 100402 - 100872 669 156 aa, chain + ## HITS:1 COG:lin2984 KEGG:ns NR:ns ## COG: lin2984 COG4405 # Protein_GI_number: 16802042 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 4 149 7 151 153 103 38.0 1e-22 MLKNVEVFWQNFLDKHELDMLMPDVWMFGDGSSEMGNRLGQLVVSGRKTATCSSLDIYKM EEEQLPKAGQYDIILDGQSQPLAIIRTTKVEIMPMNKVSESFAQAEGEGDLTLDYWYEEH ARFFKEELAPYQLQFYPDMLLVCQSFEVVDLYTEKE >gi|307679204|gb|GL457043.1| GENE 97 101048 - 101266 416 72 aa, chain + ## HITS:1 COG:L114363 KEGG:ns NR:ns ## COG: L114363 COG4443 # Protein_GI_number: 15672295 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 1 69 1 69 72 84 62.0 6e-17 MKEEFSYEILEEVAVLSENARGWRKELNLISWNGRPPKFDLREWAPDHEKMGKGITLTNE EFAELSKTIKSM >gi|307679204|gb|GL457043.1| GENE 98 101283 - 102167 1081 294 aa, chain + ## HITS:1 COG:lin1942 KEGG:ns NR:ns ## COG: lin1942 COG1561 # Protein_GI_number: 16801008 # Func_class: S Function unknown # Function: Uncharacterized stress-induced protein # Organism: Listeria innocua # 1 294 2 291 291 181 37.0 1e-45 MKSMTGFGKKTIQNENYQLDIEVKSVNQRFLDIQLRMPKELNAYELVIRQVIKRTLKRGR VEVYVNLQKIGNNQKEVRVQWDLIDQLLTSVDQHLKENYPEATFDAGDTVNHLLKQNDFV EIVEAEIVDQTFEPFLVQAFEAAIASLDQSRVQEGTQIKQVLLDYVAVLTQSIQELQAFV GVFEQEYRQRFEAKLNEWLGSQVDETRLLTEMAILLEKGDIHEELDRLDIHIDKLHQLLD ETEPVGRELDFLIQEMNREVNTIGSKSSPIEIKNSVVQMKTTLEKIREQIQNVE >gi|307679204|gb|GL457043.1| GENE 99 102223 - 102528 505 101 aa, chain + ## HITS:1 COG:no KEGG:EF3130 NR:ns ## KEGG: EF3130 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 101 1 101 101 181 100.0 9e-45 MTEVKAMTKFYDVTFQELSGRSVVKTEVASDREPFDVWQDACASYSETELNIQINEDTFV TLNRHFVVRIDVKEVDGPVDKQVRRRDELMNVVNTLSNMGL >gi|307679204|gb|GL457043.1| GENE 100 102574 - 104055 1594 493 aa, chain - ## HITS:1 COG:SA0598 KEGG:ns NR:ns ## COG: SA0598 COG1686 # Protein_GI_number: 15926319 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Staphylococcus aureus N315 # 33 415 20 400 431 229 37.0 1e-59 MNKKGLRNIARIKPFTLFLLGLVVSCGAFFAQPTVTHAEEDITAIAKKMGTTLKADGIPK AAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDI SKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAE LGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITN KPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLI EVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYGV VPKGSQPTFKLVAGQVQVDTPLTLLNSTVQAPKVAYQEVKPKQTTAEAAEESNEHSGDTT VAEPNHFIPKSIATSVLVLFGLIFSVITRQLQKRLERQKKHGKESSKTAAMRTIFLSAAV LSFLCAVGLFLLF >gi|307679204|gb|GL457043.1| GENE 101 104279 - 104893 783 204 aa, chain + ## HITS:1 COG:SP1738 KEGG:ns NR:ns ## COG: SP1738 COG0194 # Protein_GI_number: 15901570 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Streptococcus pneumoniae TIGR4 # 1 201 1 201 208 286 72.0 2e-77 MSERGLLIVLSGPSGVGKGTVRKAIFDSEENDFQYSISMTTRKQREGEVDGVDYYFRSRE EFEAMIEAGEMLEYAEYVGNYYGTPLTYVNQTLDEGKDVFLEIEVQGAKQVKDKVPDGVF IFLTPPDLAELKSRIIGRGTDEMSVIEERMAVAREEIEMMALYDYAVVNDEVPLAVQRIK DIIASEHFRVDRVIGKYIKMLEEM >gi|307679204|gb|GL457043.1| GENE 102 104898 - 105200 505 100 aa, chain + ## HITS:1 COG:SPy1630 KEGG:ns NR:ns ## COG: SPy1630 COG1758 # Protein_GI_number: 15675506 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, subunit K/omega # Organism: Streptococcus pyogenes M1 GAS # 2 81 1 79 104 73 61.0 6e-14 MMLKPSIDSLLKEVPSKYSLVILASKRAHELDEGVQPTVESFDSVKSVGRALEEIEAGTV ISDPNPEEKRERLRIEREERKRQREQEQKELENRLRDEKN >gi|307679204|gb|GL457043.1| GENE 103 105355 - 107787 2704 810 aa, chain + ## HITS:1 COG:lin1938 KEGG:ns NR:ns ## COG: lin1938 COG1198 # Protein_GI_number: 16801004 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Listeria innocua # 1 806 1 793 797 867 54.0 0 MQKVAKVIVDVPTMQTDQPFTYLVPENLNEQLAVGMRVEVPFGNGNRHVQGFVLAIEPMA AMVLDETNVQLKELVAVLDLKPVLNTEMLALADYMKEKTFAFKITCLQTMLPSVMRADYQ KYIYLTDELSEELQDQLFYGLEEISWDQAQERGLLPQLMALRKQQKVDIRYEVTTRNKVK MVRFIQAAKEFEQLEEIRLGLRKGAKKKEQLLYYLQRLGTEKVTAVKEMKELGFSTALLN EAAKNGWLTFIEKEAYRDPFANQTFEKTTALSLNAEQQVAVETILQSVQEQQSQTYLLEG ITGSGKTEVYLQVIAEVLNQGKTAIMLVPEISLTPQMVQRFKSRFGEHVAVMHSGLSQGE KYDEWRKIERGEAEVVVGARSAIFAPIENIGVIIIDEEHEASYKQEETPRYHARDLAIWR SEYHHCPVVLGSATPSLESRARAQKNVYQRLRLTQRANQAATLPTIDVVDMRQEVENGNV SSFSMSLQEKLQERLEKNEQSVLLLNRRGYSSFVMCRDCGYVLPCPNCDISLTLHMDSKT MKCHYCGHEERIPYRCPNCGQDKIRYYGTGTQKVEEELQTLLPDSRILRMDVDTTRRKGA HEKILRTFGEGQADILLGTQMIAKGLDFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQ VSGRAGRAEKPGEVIIQSFNPEHYAIQLAKAQDYEDFYTKEMYIRHRGDYPPYYFTVQIT ASHPEENEAAKQMFQIATKLKQGLSPQAILLGPTPNAIMRVNNRYFYQVIIKYKQEPMLQ PLLKEILTDTQRATARGLKLSIDAEPMNFI >gi|307679204|gb|GL457043.1| GENE 104 107871 - 108308 660 145 aa, chain + ## HITS:1 COG:BS_def KEGG:ns NR:ns ## COG: BS_def COG0242 # Protein_GI_number: 16078635 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Bacillus subtilis # 15 140 35 159 160 123 53.0 1e-28 MTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVIEIDEESGHFELINPVIIEK KGTSIDVEGCLSIPETYGTVERADEVTVRYFDREGEEMEVTAYGYLARAFQHEIDHLNGE LFIDKMIEKIAPEDLEAYMEEHFDD >gi|307679204|gb|GL457043.1| GENE 105 108301 - 109242 1354 313 aa, chain + ## HITS:1 COG:BS_fmt KEGG:ns NR:ns ## COG: BS_fmt COG0223 # Protein_GI_number: 16078636 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Bacillus subtilis # 1 301 1 301 317 339 56.0 3e-93 MTKIVFMGTPAFSVPILESLIEAGYDVQAVVTQPDRPVGRKKVITPTPVKEAALKHNLLV LQPEKISGSPEMEKVIDLAPDLIVTAAFGQFLPEKILKAPKLGAINVHASLLPKYRGGAP VHYSIIEGEKETGVTIMEMVKKMDAGAILSQRAIPITKQDDVGTMFEKLSILGKELLLET LPKLIAGEITPIPQVEEEATFSPNITREQERIDWQKTAEAIDNQVRGMRPWPTAFTTYQG TNWKIWAVTPLTETTTSAPGTIIQRSKKALWIACGEGTVLQIDRLQPAGKGQLTIQEFLN GVGQNVAEKDKVD >gi|307679204|gb|GL457043.1| GENE 106 109248 - 110627 1419 459 aa, chain + ## HITS:1 COG:BH2507 KEGG:ns NR:ns ## COG: BH2507 COG0144 # Protein_GI_number: 15615070 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Bacillus halodurans # 11 452 4 448 450 415 49.0 1e-116 MAEKIPKKLKRSVRYVALETIERVDKGGAYSNLLLNEMMTKSELSEKDGRLFTELVYGTI SRKLLLEYYLTPFVKKPQKVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIGKRRGNP GIGKFVNGVLRAFQRNGAPSLAAISDPVDRLATEISMPRWLTEKLLAQLGEEETRQLGLS LFEKSHASGRVNTRFISREEALEELQETGIAAKESQLSPYGVVAEKGYLAGSELFINGCL TIQDESSMLVAPAMQIEPHHCVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKL INENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAPCSGLGLMRRKPDIKYHKTA NDFQNLPKIQLEILESVAPTLKQWGIMVYSTCTITPEENQEVVAAFLAKHPEFEKIEIVA NENVQAVVKEQELVLYPHQYMTDGFFICCMRKVSSNEVK >gi|307679204|gb|GL457043.1| GENE 107 110629 - 111378 722 249 aa, chain + ## HITS:1 COG:SPy1626 KEGG:ns NR:ns ## COG: SPy1626 COG0631 # Protein_GI_number: 15675502 # Func_class: T Signal transduction mechanisms # Function: Serine/threonine protein phosphatase # Organism: Streptococcus pyogenes M1 GAS # 1 247 1 246 246 216 45.0 4e-56 MEINVQSDVGRKRNTNQDYANVFENQQHITFAVLADGMGGHQAGDVASQMAVNNLGESWS NASVDSAEKSAQWLIQAIQKENEKIYERGQSKPEYLGMGTTVVGAILLPDSFVLANVGDS RAYLVRDQHMLQLTEDHSLVNELVKSGEITREMAANHPRKNVLTRSLGMPGTVEVDVTNH EWLPNDYLLLCSDGLTNMVPETKILEILETSDPLESKLSQLVAQANEAGGLDNITVLVIH FDEQKEENQ >gi|307679204|gb|GL457043.1| GENE 108 111375 - 113531 2317 718 aa, chain + ## HITS:1 COG:lin1934_1 KEGG:ns NR:ns ## COG: lin1934_1 COG0515 # Protein_GI_number: 16801000 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Listeria innocua # 4 282 3 281 342 388 70.0 1e-107 MIEIGKKLNGRYHIIGSIGSGGMANVYLAHDLILDRDVAVKVLRFDFQNDQAAIRRFQRE ALAATELVHPNIVSVYDVGEEDGLQYLVMEYVKGMDLKRYIQTHFPIPYSTVVDITQQIL SAVAMAHEHRIIHRDLKPQNILIDEHGTVKITDFGIAIALSETSITQTNTMLGSVHYLSP EQARGSMATNQSDIYAVGIILYEMLTGNVPFDGESAVTIALKHFQEEIPSVKMFDPGIPQ SLENVVRHATAKDPSDRYKTANEMAEDLYTSLSASRLNEPAWEPTALLGETKVLTPIPED IAEPEETTPVEVPEDIADDILAEQPPKKNRKKLWIGLAIAALIALAIGGLAFAMSGGKDV EVPDVTNETKADASQALQSAGLKVDSETKKIPDDKIEEGKVVKTDPEAKSSVKKGRSVTL YISSGTEKIEMADYTNESYESAVEALKKLGFSEDQITTKKEYSDSVSTDNIIKQKPAAGK KVDPKKDKVTLTVSEGPEAVTLPSYAGYSYTNAVNALAQLGISESQITRVDQASDTVEPG LVITQDPAPGGTVTPKNGQVTLYVSKGSDKVTLSDYSGISYDNAVSRLIALGIPESQIKR VDEESDKVEKDTVISQEPASGTAVDPKNDTITLHVSKGSDSVTVPDISGYSPKAAEDSIN NAGLKINEQGLSGSGDGQVVERTSPSAGSKVKKGDSVTVYYSKANDSKSTTSESSTSN >gi|307679204|gb|GL457043.1| GENE 109 113780 - 114673 945 297 aa, chain + ## HITS:1 COG:lin1933 KEGG:ns NR:ns ## COG: lin1933 COG1162 # Protein_GI_number: 16800999 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Listeria innocua # 4 293 2 291 291 332 54.0 7e-91 MVYLKGQIRKALSGFYYVYADGETYQTRARGNFRNRKITPLVGDEVLFESDNLTDGYVLE ILPRRNELVRPPVANVDLGVVVMSMVSPNFSFNLLDRFLVSLEYKDIEPVIYLTKVDLLD EPQRQEVTEIKQIYEALGYAVIASEDVEATKELERFFPERLTVFMGQSGAGKSTLLNQIS PELQLATAEISQSLGRGKHTTRHVELIPLYDGLVADTPGFSAIDFLEMEAVELPKQFPEF VAAASHCKFRECMHHKEPDCEVKRQVEAGTIATSRYENYLQFLMEIKNRRPVYKKKS >gi|307679204|gb|GL457043.1| GENE 110 114697 - 115350 965 217 aa, chain + ## HITS:1 COG:lin1932 KEGG:ns NR:ns ## COG: lin1932 COG0036 # Protein_GI_number: 16800998 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Listeria innocua # 2 215 3 216 218 272 64.0 3e-73 MKLAPSILSADFANLERDIRLVEELGADYIHVDVMDGQFVPNITLGPNIVSAIRPVTKLP LDVHLMIVQPENYINAFAEAGADIITVHQEATPHIHRALQMIKNAGVKAGVTINPGTPLS MIENVLDLADQVLVMTVNPGFGGQSFIENSLEKIAQLKEWKETKGYTYEIEVDGGIVPET AARCKEAGAEVFVAGSYIYNAENPQERIDALRAVLDK >gi|307679204|gb|GL457043.1| GENE 111 115347 - 115991 567 214 aa, chain + ## HITS:1 COG:SPy0265 KEGG:ns NR:ns ## COG: SPy0265 COG1564 # Protein_GI_number: 15674445 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine pyrophosphokinase # Organism: Streptococcus pyogenes M1 GAS # 1 213 1 208 210 174 45.0 8e-44 MSRVLLVAGGNPSDWPTIEPATYDYFVGIDRGCLHLLEADLPLQLAVGDFDSLSREEYHF VQETAETLIQAPAEKDDTDTQLALQEALQRFPQAEMTIIGATGGRIDHLLANLWLPFEPR FQGVLRQIRLCDRQNSIQYYAPGSYIVPKEPDKEYLAYCCLTPVENLTLRRSKYLLTNQD VPYPTSYASNEFIEEAAAFSFDAGMIAVIQSKDK >gi|307679204|gb|GL457043.1| GENE 112 116094 - 116282 318 62 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29377572|ref|NP_816726.1| 50S ribosomal protein L28 [Enterococcus faecalis V583] # 1 62 1 62 62 127 100 3e-28 MAKVCYFTGRKTSSGNNRSHAMNSTKRTVKPNLQKVRVLIDGKPKKVWVSTRALKSGKIE RV >gi|307679204|gb|GL457043.1| GENE 113 116567 - 117457 247 296 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 2 247 11 257 312 99 28 6e-20 MSLEIKKLKKKMNEQEIIKGINLTIPEGEIYGFLGANGAGKTTIFRHILGIYSPDEGEIT WQGRKVDRFDAKEVGYLPEERGLYPKRTVRQQLTFFGKLRKMKKKEIEKSILFWLDFFKI QKNVDRKISELSKGNQQKIQFIASIIHGPKLVILDEPFSGLDPINANQLKEAILFLKENS ATIIFSSHQMANVEEICENICMMKKGEVLLEGNLKEIKDETDKRKVIVQADFDREILKQD FEIESYKEENGVISFYVKDECTAKKIQKFIFQSENIQQFRIEPISLNDIFLERVGE >gi|307679204|gb|GL457043.1| GENE 114 117459 - 118691 1145 410 aa, chain + ## HITS:1 COG:BS_yhaP KEGG:ns NR:ns ## COG: BS_yhaP COG1668 # Protein_GI_number: 16078054 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: ABC-type Na+ efflux pump, permease component # Organism: Bacillus subtilis # 11 406 11 418 419 162 30.0 9e-40 MKNIVTIALETYKQKVVSKVFVIILLVLMVGTFLGMNYEGILKKEEPSKETILVVSNNQE TVTMLKEVGKGTNLNFVDGGQKLSDAEKELKDRASKTILKIEKNSAGLYKVKIYYEGALQ YNVSEQLQSLVTTVNQSIKLNQLNIDATQQQFLNESTRLSLESLAGNQDNSVQTLILVYI VGFILYIAVMLFSTMVAQDIAVEKSSRVMEILLTTITPVQHLIGKIVGIGLVGVTQAAAI FGAAYASYGIFGDSTGVFDFLSEGKNSQAIILAVICFVLGYLLYSVTAAILGSVVSSVQE VQQLMYILIIPLFIAMFMVMILATGLGSNQATIISSYIPYLSPIVMYARYMLGDASLNTF AVAMGINLVFTMILAFLGKSVYQGGVFIYSGDKLINVFKKAFKSGKYYVR Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:07:49 2011 Seq name: gi|307679203|gb|GL457044.1| Enterococcus faecalis TX2141 genomic scaffold Scfld147, whole genome shotgun sequence Length of sequence - 1273 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 1185 1031 ## EF2174 hypothetical protein - Prom 1205 - 1264 5.2 Predicted protein(s) >gi|307679203|gb|GL457044.1| GENE 1 3 - 1185 1031 394 aa, chain - ## HITS:1 COG:no KEGG:EF2174 NR:ns ## KEGG: EF2174 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 12 350 8 364 893 198 38.0 3e-49 MKRINKISVITMLMLTTLVPSSSIVYAIDASSSESAEEVISADTAETLNSTSSSEETSTE SSSSTLSSVPSETKNSLDTSGATDTRQSTDAEETSETTSSSEANKKDEDEIVITEDMNKP MGSGMKGTRRKRAAYAYGDPISITEANRPPKNFIDVSSWNGSLSVANYQTMKSYGIGGVV VKMTEATTYQNPERFAQVQNANAVGIKVSAYHYSHFTTKDQAIKEANYFADTAINTGLSK DTLMINDAEEGSMNNGQLTANSIAFANQLKARGFTNVLHYSMAAWFTEGVLSPTQLGTEN IWIAQYPFEPTADQLWHKNEGYAAWQWSSLLTIPGVDIGVGVFDINADYTGRFTSSGGKQ YDVILDEKQYDYTARVKPAAESGKHGVFNGIMNT Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:07:56 2011 Seq name: gi|307679202|gb|GL457045.1| Enterococcus faecalis TX2141 genomic scaffold Scfld158, whole genome shotgun sequence Length of sequence - 4795 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 4, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 22 - 81 9.5 1 1 Op 1 . + CDS 180 - 665 383 ## COG3328 Transposase and inactivated derivatives 2 1 Op 2 . + CDS 771 - 920 56 ## Lbuc_2368 transposase mutator type - Term 1449 - 1502 8.2 3 2 Tu 1 . - CDS 1536 - 3650 1424 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 - Prom 3714 - 3773 9.1 - Term 3784 - 3829 8.3 4 3 Tu 1 . - CDS 4069 - 4305 80 ## COG1396 Predicted transcriptional regulators - Prom 4379 - 4438 5.0 + Prom 4183 - 4242 4.6 5 4 Tu 1 . + CDS 4406 - 4558 203 ## gi|229546323|ref|ZP_04435048.1| hypothetical protein HMPREF0349_1540 Predicted protein(s) >gi|307679202|gb|GL457045.1| GENE 1 180 - 665 383 161 aa, chain + ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 161 1 161 391 182 55.0 3e-46 MNELTTEIIATLVQKQDLDEVFRHHLEIAINQLLQTKLAAFLGYERYSYAGINTGNNRNG SYERSFDTKYGQLNLTIPRDRNGIFENHTLPAYGRHSDSLETTVIQLYTKGITTAEIAEL IEKMYGTHYSKSTVSNMTKAVDEQVQAFQQRRLASQYASVF >gi|307679202|gb|GL457045.1| GENE 2 771 - 920 56 49 aa, chain + ## HITS:1 COG:no KEGG:Lbuc_2368 NR:ns ## KEGG: Lbuc_2368 # Name: not_defined # Def: transposase mutator type # Organism: L.buchneri # Pathway: not_defined # 1 49 198 246 391 93 87.0 3e-18 MTPTESTGTWTELLGTLIKQGVKDVLLFVADGLVSLDEGLSGHFPKAKR >gi|307679202|gb|GL457045.1| GENE 3 1536 - 3650 1424 704 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 60 701 149 809 815 553 43 1e-157 MANFYGNDPFFNNDMDDVFNQLFRRMDNQNSERARYLVNGQSLTPDEFAQYRATGKLPQN NKTIEVSKDGKQAVKKGGILEKLGTNLTEQARDGLLDPVIGRENEIQETAEILSRRTKNN AILVGDAGVGKTAVVEGLAQAIVAGKVPETIQDKEIYSIDLSSLEAGTQYRGSFEENIKQ LVEEVKAAGNIILFFDEIHQILGTGATGGEDGGKGLADIIKPALSRGELSVIGATTQDEY RNTILKNAALARRFNDVVINEPTAADTLRILQGVKELYEKHHHVVLPDDVLKAAVDYSIQ YIPQRTLPDKAIDLIDMTAAHLAAKNSQTDVETLDQRLKKLEAAKEAAIKAEDFTKAADI KKSIEETKKKIKETDQKEKITATIDDVAQSVERLTGIPVSDMGANDIERLKNLDKRLKSK VIGQDEAVEMVAKAIRRNRAGFSEGNQPIGSFLFVGPTGVGKTELAKQLALDMFGNENAI IRLDMSEYADRTAVSKLIGTSAGYVGYEDNANTLTERVRRNPYSIVLLDEIEKADPQVLT LLLQVMDDGRLTDGQGNVINFKNTIIIATSNAGFGNEALSGDKQRDQSLMDKLAPFFRPE FLNRFNGIVEFSHLTKQDLSQIVELMLADVQKTLAKKSIKLEVTKAAKDWLMEQGYDEAM GARPLRRVIEQQIRDKVTDFYLDHLDVKNLKADLVDDEIVISAA >gi|307679202|gb|GL457045.1| GENE 4 4069 - 4305 80 78 aa, chain - ## HITS:1 COG:SPy2126 KEGG:ns NR:ns ## COG: SPy2126 COG1396 # Protein_GI_number: 15675874 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 62 4 65 68 67 56.0 5e-12 MSLKAARANAGFTSKEAAKTADVHFQTLSKYEKDSSDIPFSLLNELSNLYQVPINNIFLG EEYDLIRIINNKRNEVMN >gi|307679202|gb|GL457045.1| GENE 5 4406 - 4558 203 50 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|229546323|ref|ZP_04435048.1| ## NR: gi|229546323|ref|ZP_04435048.1| hypothetical protein HMPREF0349_1540 [Enterococcus faecalis TX1322] hypothetical protein HMPREF0349_1540 [Enterococcus faecalis TX1322] hypothetical protein HMPREF9496_00280 [Enterococcus faecalis TX4000] # 1 50 1 46 46 77 92.0 3e-13 MGEIACGDPILAEEYIEEYREEIDENLPTGEVFYLKTKGNSMVPTIPSDS Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:08:10 2011 Seq name: gi|307679201|gb|GL457046.1| Enterococcus faecalis TX2141 genomic scaffold Scfld159, whole genome shotgun sequence Length of sequence - 21061 bp Number of predicted genes - 22, with homology - 20 Number of transcription units - 11, operones - 6 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 64 - 123 11.0 1 1 Op 1 2/0.000 + CDS 145 - 1413 1638 ## COG1457 Purine-cytosine permease and related proteins 2 1 Op 2 5/0.000 + CDS 1433 - 2527 1352 ## COG3535 Uncharacterized conserved protein 3 1 Op 3 . + CDS 2528 - 4081 1977 ## COG0145 N-methylhydantoinase A/acetone carboxylase, beta subunit + Term 4088 - 4127 4.3 4 2 Op 1 . + CDS 4150 - 4548 610 ## EF3271 hypothetical protein 5 2 Op 2 . + CDS 4635 - 5984 466 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 - Term 5998 - 6025 0.1 6 3 Tu 1 . - CDS 6165 - 6938 590 ## COG1396 Predicted transcriptional regulators - Prom 7026 - 7085 4.6 + Prom 7025 - 7084 4.6 7 4 Op 1 17/0.000 + CDS 7116 - 7478 460 ## COG1539 Dihydroneopterin aldolase 8 4 Op 2 2/0.000 + CDS 7479 - 7964 591 ## COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase 9 4 Op 3 . + CDS 7967 - 8527 702 ## COG0302 GTP cyclohydrolase I 10 4 Op 4 . + CDS 8531 - 9124 210 ## PROTEIN SUPPORTED gi|162456259|ref|YP_001618626.1| putative ribosomal protein 11 4 Op 5 . + CDS 9117 - 9908 977 ## COG0294 Dihydropteroate synthase and related enzymes + Term 9920 - 9984 22.3 + Prom 10019 - 10078 5.9 12 5 Tu 1 . + CDS 10192 - 10275 69 ## + Term 10277 - 10319 -0.7 + Prom 10416 - 10475 7.7 13 6 Tu 1 . + CDS 10564 - 10647 69 ## + Term 10726 - 10762 4.9 - Term 10775 - 10818 9.9 14 7 Op 1 2/0.000 - CDS 10823 - 11809 953 ## COG0142 Geranylgeranyl pyrophosphate synthase 15 7 Op 2 3/0.000 - CDS 11847 - 12404 621 ## COG4769 Predicted membrane protein 16 7 Op 3 1/0.667 - CDS 12416 - 12838 563 ## COG5341 Uncharacterized protein conserved in bacteria - Prom 12867 - 12926 5.8 - Term 13294 - 13345 12.2 17 8 Tu 1 . - CDS 13420 - 15366 2144 ## COG1252 NADH dehydrogenase, FAD-containing subunit - Prom 15523 - 15582 6.9 + Prom 15530 - 15589 6.3 18 9 Tu 1 . + CDS 15644 - 16573 1253 ## COG4939 Major membrane immunogen, membrane-anchored lipoprotein + Term 16637 - 16691 9.4 + Prom 16727 - 16786 6.2 19 10 Op 1 1/0.667 + CDS 16828 - 17895 1160 ## COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis 20 10 Op 2 . + CDS 17909 - 18856 1019 ## COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase + Term 18933 - 18981 13.6 + Prom 18984 - 19043 6.3 21 11 Op 1 . + CDS 19243 - 19605 326 ## EF3076 cell wall surface anchor family protein 22 11 Op 2 . + CDS 19592 - 21059 675 ## EF3252 hypothetical protein Predicted protein(s) >gi|307679201|gb|GL457046.1| GENE 1 145 - 1413 1638 422 aa, chain + ## HITS:1 COG:lin0473 KEGG:ns NR:ns ## COG: lin0473 COG1457 # Protein_GI_number: 16799549 # Func_class: F Nucleotide transport and metabolism # Function: Purine-cytosine permease and related proteins # Organism: Listeria innocua # 2 420 4 422 427 508 68.0 1e-144 MKLKNEQQQSWLSLAFVWAGAMISVPGLIIGGTLVAGMPLWEALLTGFIGYGIIVILMIL QGIQSSDLQEPSVKVASQVFGIQGSQKIISIILAIACLGWFGLQANVSGSAFTNFLKIYG IDLPVSLSSLIWGIIMLISALYGIKILKILNYFAVPVLVLVCLYGLVASLRNNGWAAVSQ YTPQTAGSFMSGLSMTVGSFALGAVIAGDYSQYVSSRKDVVKAATLGILPTGLLMIGVGA VLTIASNTADITEVFMNLGFPVLGIIALILATWTTNAVNAFSGGLALINVFDIPKEKEKV AVGAAGAIGTLLAVVGILNYFTPIMSVLSAMVPPVAGVMIAAYWLINKGDRTKWQPTPGV NKLGVFSWLIGAAVGGIPVIMSFFPNAPQLPNQPLIGIVLSFVIYYFGAKRQQTNTESLE ME >gi|307679201|gb|GL457046.1| GENE 2 1433 - 2527 1352 364 aa, chain + ## HITS:1 COG:lin0474 KEGG:ns NR:ns ## COG: lin0474 COG3535 # Protein_GI_number: 16799550 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 364 1 363 366 565 76.0 1e-161 MRYLDAEAIENIATGAAFLGTGGGGDPYIGKMMALSAIEENGPVKLVSPEEIAAEDFFLP AAMMGAPSVAIEKFPKGDEFVRVFEKLGKYLDQETIAGTFPMEAGGVNSMIPIVVAAKLG IPLVDCDGMGRAFPELPMVTFHLNGMSATPMAITDEKGNIGIMETIDNTWTERLARVQTV EMGASALVSIYPATGKQLQDYGIHNIVTLSEEIGKVIRGTYADEQEKRQALVEVTDGFEL FQGKILDVEREVKGGFNLGRVKLSGLNSDAGSEAVVHFQNENLIAEKDGQVIAMTPDLIC MVDLETLTPVTTESLKYGKRVQVMGLKANAAWRTKKGIETVGPRYFGYEMDYQPLENLVA KEDK >gi|307679201|gb|GL457046.1| GENE 3 2528 - 4081 1977 517 aa, chain + ## HITS:1 COG:lin0475 KEGG:ns NR:ns ## COG: lin0475 COG0145 # Protein_GI_number: 16799551 # Func_class: E Amino acid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: N-methylhydantoinase A/acetone carboxylase, beta subunit # Organism: Listeria innocua # 1 516 1 515 516 728 74.0 0 MYKIGIDVGGTNTDAVILDHQLNLIHSVKVPTTDDIQTGIAGALNKVLAESAVDPTKVTH AMLGTTQCTNAIVERKKLAKVGVLRLGYPATASVLPYTAWPKDLVATLSETYALAHGGYE YDGQPLTALDEEELRGILASWRGEVEAIAVIGVFSSLKNDQELFVQALAKEVLGADVPVS CSSMIGSVGLIERENATILNAALHKVIKVTSEGFEQALEQEKIHHAQVYLCQNDGTLMSL TYAKQFPILTIACGPTNSIRGASYLAGLKDAVVLDVGGTTSDIGVLVDGFPRESSLAVDV GGVRTNFRMPDIVSIGVGGGSLVREQPDGSVTVGPDSVGYRITQEALVFGGTQLTTTDIA VRLGHAQVGDPSKVAHLDQAFAEKVYLKIGELVSEAIDRMKTSSADVTVVLVGGGSIIIP EELTGVKALIRNENGAVANAIGASIAQISGQYEQIYVYSKIQRDAALTDAQEKAVQQAEL AGAVPGTIELVEVEETPLAYHPENATRLRVKVVGNMY >gi|307679201|gb|GL457046.1| GENE 4 4150 - 4548 610 132 aa, chain + ## HITS:1 COG:no KEGG:EF3271 NR:ns ## KEGG: EF3271 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 132 1 132 132 266 98.0 2e-70 MAKLFAYQIGQNPRIQTDLLVDPQLFEDEHGCMGAVGFGLADCVQTGMFTDIEVIKRYLH EATYVFINGDFDRLSYLEIGIALSLGKTLYVITMNPNVTKEDLGIPFDNATIEFLSPSAF MERIHKTEAAEN >gi|307679201|gb|GL457046.1| GENE 5 4635 - 5984 466 449 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 1 443 1 442 458 184 29 5e-46 MKTYDYIVIGGGSGGIASANRAGMHGANVLLIEGNEIGGTCVNVGCVPKKVMWQASSMME MMERDTAGYGFDVEIKNFSFKQLVENREKYIDFLHGAYNRGLDSNNIERIHGYATFTGEQ TIEVNGTEYTAPHILIATGGRPKKLGIPGEEYALDSNGFFALEEMPKRVVFVGAGYIAAE LAGTLHGLGAETHWAFRHERPLRSFDDMLSEKVVERYQEMGMQIHPNATPAKIEKTAQNE YVITFENGESITTDAVIFGTGRQPNTDQLGLENTKVALDEKGYVKVDKFQNTTQNGIYAV GDVIGKIDLTPVAIAAGRRLSERLFNGQTDLYLDYNLVPTVVFTHPPVATIGLTEKAALE EYGKDQVKIYRSSFTPMYFALGEYRQKCDMKLICVGKEEKIVGLHGIGIGVDEMLQGFAV AIKMGATKADFDNTVAIHPTGSEEFVTMR >gi|307679201|gb|GL457046.1| GENE 6 6165 - 6938 590 257 aa, chain - ## HITS:1 COG:L12334 KEGG:ns NR:ns ## COG: L12334 COG1396 # Protein_GI_number: 15671989 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 1 64 1 64 107 65 42.0 1e-10 MLIQTILKTRRINNHYTQEQIAQKLHVTTQAISKWETGQSIPSIDNLLMLSDLYNVSIDE LIQGSPYFKKPQVVGKIYNLKKGILFCIVWTCFSLLLTGFGYQPFWLFSAIIFISLLLVF PIIFSDYWIINQQDIMVHQFSRNPILKIIECIKNSSTQIKIPYSEIESIEIIYTKKIRAS AFDSSPDYFYLLVTYNNQTTKLYLDIYAKRFLPQFIAFLSRQRITIIDKSEIIELLVSDT SLYQHFNEKNVATDNRK >gi|307679201|gb|GL457046.1| GENE 7 7116 - 7478 460 120 aa, chain + ## HITS:1 COG:lin0257 KEGG:ns NR:ns ## COG: lin0257 COG1539 # Protein_GI_number: 16799334 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroneopterin aldolase # Organism: Listeria innocua # 1 119 1 118 124 85 39.0 2e-17 MDKIRINNLKFFTKNGVLAEEKRLGQQVEIDLEMQLSLAEAGRTDDVTQTVNYAEVNELI AQRVNNHSYDLIEGLASAILDDISADYQEQLNKIIIKIRKYSVPMPGLFDNIEIEMEREV >gi|307679201|gb|GL457046.1| GENE 8 7479 - 7964 591 161 aa, chain + ## HITS:1 COG:SMc00465 KEGG:ns NR:ns ## COG: SMc00465 COG0801 # Protein_GI_number: 15965562 # Func_class: H Coenzyme transport and metabolism # Function: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase # Organism: Sinorhizobium meliloti # 5 148 12 155 174 121 41.0 6e-28 MIGYVALGSNVGDPYANLVKARNYLNEDPQIQVVASSKLYETDPYGYTDQDDFLNAVLKI DTSYTAEELLAVTQGIEQVMKRKKLIHWGPRIIDIDILLLGEQSVAFPHLQVPHQELTKR SFVLIPLSDVYAEEQLLGTPIATWIQRSGNQEEVRVSEKEW >gi|307679201|gb|GL457046.1| GENE 9 7967 - 8527 702 186 aa, chain + ## HITS:1 COG:BS_mtrA KEGG:ns NR:ns ## COG: BS_mtrA COG0302 # Protein_GI_number: 16079335 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase I # Organism: Bacillus subtilis # 1 174 1 174 190 204 60.0 8e-53 MEQEKQAQIEQAVTTILEAVGEDTQRSGLIDTPKRVAKMYAEVFSGLTEPEFDDYKLFDS LNEGEMVLVKDIAFYSMCEHHLLPFYGKVHVAYLPEGGKVLGLSKLPRLVEHCAKRPTVQ EDLTVTIARKLQENIPVKGIAVAIEAEHMCMTMRGVKTPQSSTKTFQFTGLFKEQEWKNQ FLMEIR >gi|307679201|gb|GL457046.1| GENE 10 8531 - 9124 210 197 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|162456259|ref|YP_001618626.1| putative ribosomal protein [Sorangium cellulosum 'So ce 56'] # 1 186 6 196 207 85 29 3e-16 MEIIVGTNNQGKLKEMQSGLKDPAIQLVSYRKYTTSQEQPAETGTTYAENAYLKARFFQQ LIGRPVLGDDGGLTLTAFPDLLGIHTSRFFHSANPEEQNRELLHLFEGQQSIRELTLSAT LVYVLDDDKLLQTEATLTGELVEPRGTGGYGFDPIIYLPDRGKTLAELSTSERMKISPRM RALRKMIQQIKEQCDND >gi|307679201|gb|GL457046.1| GENE 11 9117 - 9908 977 263 aa, chain + ## HITS:1 COG:slr2026 KEGG:ns NR:ns ## COG: slr2026 COG0294 # Protein_GI_number: 16329867 # Func_class: H Coenzyme transport and metabolism # Function: Dihydropteroate synthase and related enzymes # Organism: Synechocystis # 1 259 21 287 289 198 41.0 1e-50 MIDLKKNYQIMGIVNTTPDSFSDGGSYTTVDVAYQHALHLLEAGADILDIGGQSTRPGYE EVSPQVEADRVLPLIKKIRETSLAPISVDTYYPEVAEAAIQAGATMINDIKGLDTPGMAE VLAQYPEVQVVIMHSRKRQSLSLKEELHQFYTEKIEQCQKYGLSLEKICFDPGIGFHKTV AENLQLLKDPNAFRYQDYPLLYGVSRKRTIGALTNEPEPANRDFGSAAASLYAAQQGVEI LRVHNVQGLKQTFDVWRALSEKE >gi|307679201|gb|GL457046.1| GENE 12 10192 - 10275 69 27 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTVFEALMLAIAFATLIVKISNKNDKK >gi|307679201|gb|GL457046.1| GENE 13 10564 - 10647 69 27 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTVFEALMLAIAFATLIVKISNKNDKK >gi|307679201|gb|GL457046.1| GENE 14 10823 - 11809 953 328 aa, chain - ## HITS:1 COG:lin2790 KEGG:ns NR:ns ## COG: lin2790 COG0142 # Protein_GI_number: 16801851 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Listeria innocua # 1 327 1 325 326 334 48.0 1e-91 MNIHPMWNTYPTLSKELTTTLRLMEQAVQIDNQEIQAAVHDMIHSGGKLLRPAYQLLFSY FGEQRDPKKATALAASIELLHTATLVHDDIVDEADTRRGLPTLRSRFGNSTAVYTGDYLF VCCFKLLSDYSSSLKSIQLNSRSMEKVLTGELGQMDNRYNFEVTIDQYLKNISGKTAELF ALSCFVGAYESGTSQRFAKRCGEIGENIGLAFQIIDDILDYTQTADAIGKPVLEDVRQGV YSLPLIYALEANREVLLPLLMKKEALTDEETQEIYRLVHELGGVEKAQQLATHYTEKALK EISKLPETKAQAKEQLYEITQTILTREN >gi|307679201|gb|GL457046.1| GENE 15 11847 - 12404 621 185 aa, chain - ## HITS:1 COG:lin2789 KEGG:ns NR:ns ## COG: lin2789 COG4769 # Protein_GI_number: 16801850 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 1 169 1 169 180 207 64.0 9e-54 MSKLHKNIYIAMLVAQGVIIGLIENMIPYPFAFAPGAKLGLANLITIIAIFTMRKRDSFF LVCLRLILTTLLGGTLSTFFYSASGALLSYFGMLLVKQLGPKRVSIIGISAVGGFLHNVG QLLTTSFFAHSWAPMLYLPFLSLFGLLSGIAIGIAANYLLQHVQTLRKFQLNYEQTTKHK WSQFF >gi|307679201|gb|GL457046.1| GENE 16 12416 - 12838 563 140 aa, chain - ## HITS:1 COG:L178600 KEGG:ns NR:ns ## COG: L178600 COG5341 # Protein_GI_number: 15673322 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 6 140 10 133 135 102 45.0 2e-22 MTIKEFIKKSRLKTWDVIIIAILVLGSFLPLVVFAMQNRGQEAATYQAVLKVDNKVIKVF DLKKDGPHYTYKYEAKDGDYNLIEVDGDRIRVKEANCADLVDVRRGWISKPGETPIACLP HNLFITVEASDGSEDGSLIY >gi|307679201|gb|GL457046.1| GENE 17 13420 - 15366 2144 648 aa, chain - ## HITS:1 COG:L41335 KEGG:ns NR:ns ## COG: L41335 COG1252 # Protein_GI_number: 15672811 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase, FAD-containing subunit # Organism: Lactococcus lactis # 1 648 1 666 667 717 57.0 0 MTKQNIVVVGAGYAGVSATKFLAKKFKKDTDVTITLIDRHSYHTMMTELHEVAGGRVEPE AIQYDLQRLFSRKKNVKLVTDTVTGIDKENKVVKTLAGSYPFDQLILGMGGEPNDFGTPG VKENGFTLWSFDDAVKIRHHIEATVAKAAIEPDAEVRKAMLTFVVCGSGFTGIEMVGELI DWKDRLAKDAKIDPDEITLMVVEAMPTILNMLSRNDAAKAERYLEKKNVQLLLNSPIVEV AADHIKLKDGSEVPTHTLIWTAGVKATSDAADFGLEAARGSRLVANEYMQAKGYEDKNIY IIGDLVYYEETPNTPTPQIVQAAEQTGHTAAANIVADIKGGEKHAFKGNYQGFMVSIGAK WGVANLFDKIHLSGFLAIIMKHIVNLKYFFDIRSGYYMFQYIMHEIFHIKDDRSVARGHT SRYGNVLWSVPLRVFYGMVWLVESMKKIVGNGDYLKPSTWFGDGSWFTDKVVFPFPWLQE QVTTGASQATETATTAASGAADAAASGGADAATQAAHFGLSYAYGETPMQVFDHMPKWFE SVMKFMMPNQEVALFMQKFMTIVEVCIALALIAGLFTWLSSAATIGLTIAFCLSGMFYWV NIWFIFVAFALMNGSGRAVGLDRWVIPWIQRKLGKAWYGTPKARYGGK >gi|307679201|gb|GL457046.1| GENE 18 15644 - 16573 1253 309 aa, chain + ## HITS:1 COG:lin2786 KEGG:ns NR:ns ## COG: lin2786 COG4939 # Protein_GI_number: 16801847 # Func_class: S Function unknown # Function: Major membrane immunogen, membrane-anchored lipoprotein # Organism: Listeria innocua # 1 307 1 296 299 221 50.0 2e-57 MKVNKFVKGFAAIALFSLVLAGCGADKKDNTTNSSSAASSETKKSTESSAPAKKVAGGDL KDGTYKLEEKNEKNGYRAVFEMTVKDGKITESKYDNINADGKSKTEDTKYEESMKAKSGV GPKEYIKQLNDSFVKEQSASGVEVVTGATHSSESFQNYAQQLIQAAQAGNTDTIEIDNGA ALKDGTYSLKEKNDSNGYHTTFSMTVKDGKVTESNYDNVNADGKSKKDDTEYESKMKDVA GVGPKEYIETLNKEFVKAMGEEDGSPAGVEVVTGATHSTHSFINYAQQLVNAAEKGDTTE IVVDNIVTK >gi|307679201|gb|GL457046.1| GENE 19 16828 - 17895 1160 355 aa, chain + ## HITS:1 COG:lin2785 KEGG:ns NR:ns ## COG: lin2785 COG1477 # Protein_GI_number: 16801846 # Func_class: H Coenzyme transport and metabolism # Function: Membrane-associated lipoprotein involved in thiamine biosynthesis # Organism: Listeria innocua # 3 340 2 348 360 376 56.0 1e-104 MKKKLLLMVSVLAVLFVAAACSSKPEAKINTEPYSDRQTMLGTYVQIRIYDDGKEDVLPK AFARVKELGDKITVNQPGSEIDEINQEAGVKPVKVSDDLYPLLKKAYEYSKDSRGGFDMA IGPITSMWHIGFDDARKPSQAEIDQALKLVDYTKVKFNDKEQTVYLEEKGMQLDLGAIAK GFITDEVVKVLKDNGVTTAIVDLGGNVYVLGHSPRGKDMDWTVGIQDPNKARNTVLGQVK ESNKTLVTSGIYERYLKVDGKTYHHLFDRETGYPFDNDIAGVTIITDKSIDGDGLSTAVF SMGVKKGLEYVESLKGTDAIFVTKDDKVYISKDIEGNFEIGKDSGYTMGNRADLK >gi|307679201|gb|GL457046.1| GENE 20 17909 - 18856 1019 315 aa, chain + ## HITS:1 COG:L112353 KEGG:ns NR:ns ## COG: L112353 COG1575 # Protein_GI_number: 15673645 # Func_class: H Coenzyme transport and metabolism # Function: 1,4-dihydroxy-2-naphthoate octaprenyltransferase # Organism: Lactococcus lactis # 1 313 1 313 319 306 54.0 4e-83 MSLNVFLKVVEIQTKLASLFPFIIGVLFSMTYFGEVQWGNTLVFFIGMVVFDMATTAINN YMDFKKAKSDVYKYEENIIGQSGVSPQLVRNMIFAMIAFTAVVGAYLTVQTGWLFLVLGG ICCFIGIFYTYGPIPLSRMPLGEIFSGFTMGLGIFVLTVYLNVVTNPPFYLTVDFASGAF RLDGNLWAVLAIVVASLPLVCSIANIMLANNLRDLDTDIENHRYTLVYYIGRPAGIVLFQ VLALAGYLVILFGFISGIYQWPVLITFATLPVIWKNIQTFKQELPQPKSFRHSIKNLMVF NGTYALGLLISALLG >gi|307679201|gb|GL457046.1| GENE 21 19243 - 19605 326 120 aa, chain + ## HITS:1 COG:no KEGG:EF3076 NR:ns ## KEGG: EF3076 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 120 1 120 120 187 90.0 1e-46 MKKKRYLMIVCLLSSPSFFINVEASDGGSSSVGIEFYQNPRTPAPKDAPPKTDAPAADPK EPAGPPKGDQRSGGSTQTTTTGSQLPRTGSKSQANLSILGLALIGLAGMVHRKKGRHEAN >gi|307679201|gb|GL457046.1| GENE 22 19592 - 21059 675 489 aa, chain + ## HITS:1 COG:no KEGG:EF3252 NR:ns ## KEGG: EF3252 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 483 1 470 1265 231 40.0 7e-59 MKQTKWQRLATIGLCSSLVINAFSGVTAVAETITIESSPTVASSAKEATSASSATPESTE SSQETTETSREEVTQETEKPEELREDELRNKSQIKDNNSLRSSGTRALAQMPYRAFTIYF VSEDGSFIDPSLINMSANIMTFNQTALGTDPSVYSPSIRQPISIIDAVDHKKFDVAAESY TYSTNSVFPRNFRGVSDIKITVPKKYSDLTVKPTNYYSSSKSYPLPVYTTTSLLSGTVQS SDSSGSLYELTKAAEPNTFRENYDNRTSYGVDKSPVSFGYYLGDASGVTNLIFGTTTPIY YYLTNRRVTESFKDTAGATIPAPTGFTQGKQTSITSNNYTFKQAGTLPETYKASNGKTYK FKGWYKGKTKPNTLTTTKTPSYAVTYDDNDDLNVVYEEIKVLEFPSRTYQFGFVDESGKR VDASTIDLTYDSWYGIGTEPPNNIPSAWATTKIETGIKANTKNNLKEIIYPVQYLETNSN DSFQFSAVN Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:08:32 2011 Seq name: gi|307679200|gb|GL457047.1| Enterococcus faecalis TX2141 genomic scaffold Scfld161, whole genome shotgun sequence Length of sequence - 1667 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 70 - 116 2.2 1 1 Tu 1 . - CDS 119 - 1384 898 ## HMPREF0424_0530 hypothetical protein - Prom 1411 - 1470 6.5 2 2 Tu 1 . - CDS 1482 - 1643 321 ## COG0582 Integrase Predicted protein(s) >gi|307679200|gb|GL457047.1| GENE 1 119 - 1384 898 421 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0424_0530 NR:ns ## KEGG: HMPREF0424_0530 # Name: not_defined # Def: hypothetical protein # Organism: G.vaginalis # Pathway: not_defined # 10 420 10 426 432 240 35.0 1e-61 MKSFLFFTFILFVIIIIYLVLKKSKLKNMNCNNDEQQNISISPSLTVEDDKPFEIPITLD LISERTLDERKLYEIKDSNVIARISEVVPALTKTVAKAGTHKGLQSGGEVYRVIIPSGAT LSKSKNLEGAVRGFYSNGKGIAGQADLVKVNPSQLSKASKVANGVANVMNVASLVVGQYY MSEVNDKLQTMNKSISGIGDFQQREFKSKIFSLITRVGKISKFSSDILENDELRNRMLHS LDSIEGEVTQLLQQVNITIDDLSTHNKQIDFKTYSEKINEFNKLVTYQKVLVSLLEEISK LTYSLNRGAIKAEICYSMFNEYMNQSNDSLAKLKLWHDNQTKYLGIDIDNHRIKKYGFEG ALGKAQGLFNKDLEYKPLDENIEEKIISQTFNKRLETAHPDEVLNKDIEIITKEGKLYYL K >gi|307679200|gb|GL457047.1| GENE 2 1482 - 1643 321 53 aa, chain - ## HITS:1 COG:pli0062 KEGG:ns NR:ns ## COG: pli0062 COG0582 # Protein_GI_number: 18450344 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Listeria innocua # 1 53 95 147 147 100 98.0 7e-22 MRKTGAYRVYTQSNYNIGLVMHLLNHSSEAMTLTYLGLDQASRETMLDQIDFG Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:09:05 2011 Seq name: gi|307679199|gb|GL457048.1| Enterococcus faecalis TX2141 genomic scaffold Scfld170, whole genome shotgun sequence Length of sequence - 92214 bp Number of predicted genes - 89, with homology - 85 Number of transcription units - 49, operones - 30 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 39 - 128 62.1 # Ser TGA 0 0 + TRNA 162 - 235 74.1 # Met CAT 0 0 + TRNA 284 - 357 80.1 # Asp GTC 0 0 + TRNA 363 - 435 75.8 # Phe GAA 0 0 + TRNA 450 - 520 71.8 # Gly TCC 0 0 + TRNA 534 - 607 92.9 # Ile GAT 0 0 + TRNA 618 - 705 62.7 # Ser GCT 0 0 + TRNA 721 - 792 70.2 # Glu TTC 0 0 2 1 Op 2 . + CDS 2222 - 3652 1880 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase + Term 3675 - 3738 5.7 3 2 Op 1 . + CDS 3775 - 5241 1617 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 4 2 Op 2 . + CDS 5262 - 6080 1032 ## COG0406 Fructose-2,6-bisphosphatase + Term 6107 - 6163 17.0 + Prom 6291 - 6350 8.7 5 3 Op 1 . + CDS 6415 - 6516 57 ## + Term 6563 - 6621 2.3 + Prom 6557 - 6616 4.5 6 3 Op 2 . + CDS 6700 - 6942 64 ## gi|312900590|ref|ZP_07759889.1| conserved hypothetical protein + Term 7053 - 7108 16.8 + Prom 7076 - 7135 9.6 7 4 Tu 1 . + CDS 7164 - 7907 673 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) + Term 7911 - 7954 6.9 - Term 7851 - 7895 1.7 8 5 Tu 1 . - CDS 7925 - 8491 459 ## COG2169 Adenosine deaminase - Prom 8561 - 8620 6.2 + Prom 8545 - 8604 2.6 9 6 Op 1 . + CDS 8630 - 9121 572 ## COG0350 Methylated DNA-protein cysteine methyltransferase 10 6 Op 2 . + CDS 9134 - 9646 255 ## PROTEIN SUPPORTED gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) 11 6 Op 3 . + CDS 9659 - 10333 749 ## COG1418 Predicted HD superfamily hydrolase + Prom 10366 - 10425 5.1 12 7 Op 1 . + CDS 10476 - 11411 1072 ## COG0053 Predicted Co/Zn/Cd cation transporters 13 7 Op 2 . + CDS 11456 - 11854 359 ## EF0281 hypothetical protein + Term 11869 - 11927 4.1 - Term 11857 - 11913 8.3 14 8 Tu 1 . - CDS 11952 - 12704 1005 ## COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH) - Prom 12732 - 12791 7.8 15 9 Op 1 8/0.000 + CDS 13002 - 14240 1580 ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase 16 9 Op 2 . + CDS 14242 - 14676 665 ## COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases + Term 14688 - 14730 7.1 + Prom 14682 - 14741 7.0 17 10 Op 1 . + CDS 14768 - 15658 325 ## gi|255970899|ref|ZP_05421485.1| predicted protein + Prom 15663 - 15722 7.9 18 10 Op 2 . + CDS 15750 - 16685 1223 ## COG0167 Dihydroorotate dehydrogenase + Term 16695 - 16727 4.2 - Term 16683 - 16715 4.2 19 11 Tu 1 . - CDS 16726 - 17373 642 ## EF0286 fibronectin-binding protein, putative - Prom 17557 - 17616 6.3 + Prom 17640 - 17699 5.0 20 12 Tu 1 . + CDS 17728 - 18288 814 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) + Term 18290 - 18341 12.6 + Prom 18318 - 18377 5.5 21 13 Tu 1 . + CDS 18458 - 18595 200 ## EF0288 hypothetical protein + Term 18617 - 18662 10.6 + Prom 18604 - 18663 3.5 22 14 Op 1 8/0.000 + CDS 18685 - 19602 1245 ## COG0031 Cysteine synthase 23 14 Op 2 . + CDS 19616 - 20752 1482 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases + Term 20754 - 20800 10.1 - Term 20742 - 20787 13.7 24 15 Op 1 8/0.000 - CDS 20789 - 22219 1450 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 25 15 Op 2 1/0.056 - CDS 22246 - 23580 1234 ## COG1455 Phosphotransferase system cellobiose-specific component IIC - Prom 23652 - 23711 4.8 - Term 23692 - 23745 13.1 26 16 Tu 1 . - CDS 23754 - 24515 641 ## COG1737 Transcriptional regulators - Prom 24538 - 24597 8.8 + Prom 24502 - 24561 8.4 27 17 Tu 1 . + CDS 24762 - 25304 529 ## COG0262 Dihydrofolate reductase + Prom 25307 - 25366 2.1 28 18 Op 1 . + CDS 25436 - 26803 1276 ## COG0168 Trk-type K+ transport systems, membrane components 29 18 Op 2 . + CDS 26824 - 27987 1527 ## COG0475 Kef-type K+ transport systems, membrane components + Term 28037 - 28094 3.6 + Prom 27989 - 28048 5.5 30 19 Op 1 1/0.056 + CDS 28116 - 28556 385 ## COG3682 Predicted transcriptional regulator 31 19 Op 2 . + CDS 28572 - 31058 2899 ## COG2217 Cation transport ATPase 32 19 Op 3 . + CDS 31080 - 31286 273 ## EF0299 copper transport protein CopZ + Term 31295 - 31334 9.4 - Term 31274 - 31330 19.1 33 20 Op 1 . - CDS 31331 - 32701 1019 ## EF0300 hypothetical protein 34 20 Op 2 . - CDS 32701 - 33090 465 ## COG1725 Predicted transcriptional regulators - Prom 33116 - 33175 7.1 + Prom 33066 - 33125 8.4 35 21 Tu 1 . + CDS 33240 - 34568 1518 ## COG3579 Aminopeptidase C + Term 34579 - 34620 2.1 - Term 34565 - 34607 9.1 36 22 Op 1 4/0.000 - CDS 34611 - 35231 739 ## COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family 37 22 Op 2 . - CDS 35253 - 36227 1202 ## COG0346 Lactoylglutathione lyase and related lyases - Prom 36278 - 36337 7.7 38 23 Op 1 12/0.000 + CDS 36514 - 36849 444 ## COG2076 Membrane transporters of cations and cationic drugs 39 23 Op 2 . + CDS 36846 - 37157 564 ## COG2076 Membrane transporters of cations and cationic drugs - Term 37200 - 37242 5.0 40 24 Op 1 1/0.056 - CDS 37253 - 38299 1033 ## COG3469 Chitinase 41 24 Op 2 . - CDS 38342 - 38926 732 ## COG3397 Uncharacterized protein conserved in bacteria - Prom 39016 - 39075 7.8 + Prom 39016 - 39075 7.9 42 25 Op 1 . + CDS 39200 - 39934 979 ## COG3884 Acyl-ACP thioesterase 43 25 Op 2 . + CDS 39985 - 40818 828 ## COG1801 Uncharacterized conserved protein 44 25 Op 3 . + CDS 40835 - 41371 555 ## COG4696 Uncharacterized protein conserved in bacteria - Term 41351 - 41386 6.0 45 26 Tu 1 . - CDS 41394 - 42746 1591 ## COG0527 Aspartokinases - Prom 42777 - 42836 5.3 + Prom 42844 - 42903 8.0 46 27 Tu 1 . + CDS 42933 - 43619 936 ## COG0637 Predicted phosphatase/phosphohexomutase + Prom 43635 - 43694 8.3 47 28 Op 1 3/0.000 + CDS 43805 - 45541 2114 ## COG4477 Negative regulator of septation ring formation + Term 45558 - 45597 8.4 + Prom 45583 - 45642 6.0 48 28 Op 2 . + CDS 45667 - 46812 1167 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes + Term 46813 - 46871 14.1 - Term 46803 - 46859 16.7 49 29 Op 1 40/0.000 - CDS 46865 - 47557 677 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 50 29 Op 2 . - CDS 47554 - 49035 1487 ## COG0642 Signal transduction histidine kinase - Prom 49181 - 49240 11.0 + Prom 49088 - 49147 9.0 51 30 Tu 1 . + CDS 49221 - 50198 1295 ## EF0374 putative lipoprotein + Term 50218 - 50272 14.6 + Prom 50234 - 50293 7.8 52 31 Op 1 . + CDS 50383 - 50739 474 ## EF0375 hypothetical protein 53 31 Op 2 . + CDS 50708 - 51349 709 ## EF0375 hypothetical protein + Term 51377 - 51416 6.2 + Prom 51393 - 51452 13.3 54 32 Tu 1 . + CDS 51568 - 52611 1119 ## EF0376 hypothetical protein + Term 52630 - 52675 7.1 + Prom 52678 - 52737 4.9 55 33 Op 1 . + CDS 52785 - 53588 1029 ## COG0666 FOG: Ankyrin repeat 56 33 Op 2 . + CDS 53640 - 54851 1465 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases + Term 54852 - 54897 4.6 - Term 54835 - 54888 12.1 57 34 Op 1 . - CDS 54961 - 55380 266 ## COG3654 Prophage maintenance system killer protein 58 34 Op 2 . - CDS 55377 - 55616 344 ## EF0380 hypothetical protein - Prom 55643 - 55702 8.9 - Term 55663 - 55704 1.0 59 35 Op 1 . - CDS 55717 - 56529 797 ## COG0657 Esterase/lipase 60 35 Op 2 . - CDS 56504 - 58096 1083 ## COG2508 Regulator of polyketide synthase expression - Prom 58122 - 58181 6.1 + Prom 58086 - 58145 7.5 61 36 Op 1 . + CDS 58219 - 61230 4028 ## COG0074 Succinyl-CoA synthetase, alpha subunit 62 36 Op 2 . + CDS 61223 - 62056 529 ## EF0384 hypothetical protein 63 36 Op 3 1/0.056 + CDS 62066 - 63319 1522 ## COG0477 Permeases of the major facilitator superfamily + Prom 63345 - 63404 2.2 64 37 Op 1 . + CDS 63454 - 64392 1244 ## COG0549 Carbamate kinase 65 37 Op 2 . + CDS 64399 - 65619 940 ## COG1301 Na+/H+-dicarboxylate symporters 66 37 Op 3 . + CDS 65709 - 66770 1247 ## COG2055 Malate/L-lactate dehydrogenases + Term 66771 - 66823 1.1 67 38 Op 1 . + CDS 66836 - 68191 1645 ## EF0389 hypothetical protein 68 38 Op 2 . + CDS 68216 - 69439 1810 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases + Term 69455 - 69503 13.6 + Prom 69632 - 69691 7.9 69 39 Tu 1 . + CDS 69887 - 72181 1678 ## EF0392 hypothetical protein 70 40 Tu 1 . + CDS 72638 - 73993 1673 ## COG3883 Uncharacterized protein conserved in bacteria + Term 74019 - 74054 5.1 + Prom 74321 - 74380 10.8 71 41 Tu 1 . + CDS 74401 - 75528 1491 ## COG0620 Methionine synthase II (cobalamin-independent) + Term 75533 - 75577 11.5 - Term 75509 - 75573 14.0 72 42 Op 1 . - CDS 75579 - 76763 1135 ## COG0628 Predicted permease 73 42 Op 2 . - CDS 76779 - 77294 571 ## EF0397 hypothetical protein - Prom 77319 - 77378 5.6 + Prom 77079 - 77138 9.7 74 43 Op 1 . + CDS 77371 - 77472 85 ## 75 43 Op 2 6/0.000 + CDS 77487 - 78173 767 ## COG3819 Predicted membrane protein 76 43 Op 3 3/0.000 + CDS 78170 - 79114 1083 ## COG3817 Predicted membrane protein 77 43 Op 4 . + CDS 79130 - 79771 854 ## COG2039 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) + Term 79779 - 79815 5.1 78 43 Op 5 . + CDS 79838 - 79927 73 ## + Term 80066 - 80114 13.4 + Prom 79960 - 80019 5.9 79 44 Tu 1 . + CDS 80215 - 81618 1765 ## COG1757 Na+/H+ antiporter + Term 81630 - 81692 12.1 + Prom 81673 - 81732 4.2 80 45 Op 1 1/0.056 + CDS 81770 - 82204 564 ## COG1846 Transcriptional regulators 81 45 Op 2 . + CDS 82209 - 82844 913 ## COG0778 Nitroreductase + Term 82946 - 82987 -0.6 82 46 Tu 1 . - CDS 82887 - 83720 675 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 83808 - 83867 11.4 + Prom 83797 - 83856 6.1 83 47 Op 1 4/0.000 + CDS 83904 - 85652 1488 ## COG2213 Phosphotransferase system, mannitol-specific IIBC component 84 47 Op 2 5/0.000 + CDS 85643 - 87676 1863 ## COG3711 Transcriptional antiterminator 85 47 Op 3 . + CDS 87687 - 88121 474 ## COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain + Term 88308 - 88357 7.4 - Term 88302 - 88337 4.3 86 48 Tu 1 . - CDS 88379 - 88474 170 ## + Prom 88489 - 88548 5.9 87 49 Op 1 . + CDS 88720 - 90492 2287 ## COG2213 Phosphotransferase system, mannitol-specific IIBC component 88 49 Op 2 15/0.000 + CDS 90507 - 90944 573 ## COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain 89 49 Op 3 . + CDS 90959 - 92113 1551 ## COG0246 Mannitol-1-phosphate/altronate dehydrogenases Predicted protein(s) >gi|307679199|gb|GL457048.1| GENE 1 1035 - 2198 1517 387 aa, chain + ## HITS:1 COG:L90678_2 KEGG:ns NR:ns ## COG: L90678_2 COG1263 # Protein_GI_number: 15673442 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Lactococcus lactis # 10 225 160 377 386 178 47.0 2e-44 MIIHKILNNNVVITLLVPFFVLLIALPIGFLVIGPIVSMLTDLLSAGFTALMSFSPALYG LILGFFWQVLVIFGLHWSVVPLAIMQVTQEGSSQVLTGSFAASFAQTAVVLAMFFKLKDK KLKALCPPAIISGIFGVTEPAIYGITLPKKWPFIYSMIGGAVGGLYLMINNVTAYTMGGL GIFGVLNFINGDDASGMIQSFIAIAIAAVVGFGLTFFFWKDNTVEEEEVIIDKTTIKKEN ITSPVKGRVLSLKNAEDPAFANGALGNGVVIEPTEGKVVAPFDGTIVTLFPTKHALGLIS DNGTELLIHIGIDTVQLEGEGFEAFVKQGDRVKKGQTLVTFDLEGIKKAGFSTQIPIVVT NTADYLDILEVGSNEVSTSDDLLTALI >gi|307679199|gb|GL457048.1| GENE 2 2222 - 3652 1880 476 aa, chain + ## HITS:1 COG:L121426 KEGG:ns NR:ns ## COG: L121426 COG2723 # Protein_GI_number: 15673653 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Lactococcus lactis # 1 476 1 476 477 787 76.0 0 MAFRKDFLWGGATAANQCEGGYNEGGRGLANVDLAPTGPDRFPVITGEKKMFNFDEEHFY PAQEAIDMYHRYKEDIALFGEMGFKTYRLSIAWSRIFPMGDETEPNEEGLKFYEDLFKEC HKYGIEPLVTITHFDCPMHLVEEYGAWRSRKLVGFYENLCRVIFNRYKGLVKYWLTFNEI NMILHAPFMGAGLYFEEGENKEQVKYQAAHHELLASAIATKIAHEVDPENQVGCMLAAGS NYAYTCKPEDVFAARQADRENYFFIDVQSRGEYPAYALKEMARKGIQIEMEEGDEELLKE HTVDFISFSYYSSRVTSTDPEINEQTAGNIFASVKNPYLKASEWGWQIDPLGLRITMNDL YDRYQKPLFIVENGLGAVDTPDENGYVVDDYRIDYLAAHIQAMKDAVEQDGVDLLGYTTW GCIDLVSAGTGEMKKRYGFIYVDRDNEGNGTLKRSKKKSFDWYKKVIATNGEDLSN >gi|307679199|gb|GL457048.1| GENE 3 3775 - 5241 1617 488 aa, chain + ## HITS:1 COG:lin0017 KEGG:ns NR:ns ## COG: lin0017 COG2723 # Protein_GI_number: 16799096 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Listeria innocua # 3 485 6 476 477 547 55.0 1e-155 MGFPENFLWGGATAANQYEGGYLSGGKGLSTLDAITGGSQTEPRRITYLTKEGQKASCTR DQALPEGAIGYIDEELYYPSHVATDFYHHYEEDIALFAEMGFKCFRLSIAWSRICPNGTK EINEEGLAFYDKVFDALLRNGIEPVVTINHFDIPMYLADEYDGWKNREVIDFFVFFCETI FTRYQDKVKYWMTFNEINFLRSWTQIGIHNNDKQSKYQAAHHLFVASAKAVELGHSINPD FQIGMMVAYIPSYPLSCKSEDVMAAVQFNREQEFYMDVQAKGYYPAHKLKEFEREGMTIQ MESEDLAIIQKGTVDYIGFSYYMSTVSTAYPEEVKYVGGNQMPAVKNPYLQESEWGWAVD PLGLRISLCQLSDRYNMPLFVVENGFGAVDTLQEDGSIVDDYRIDYFKQHIEAMRTAVEE DGVNLIGYTPWGCIDLVSAGTGEMKKRYGFIYVDMDDEGQGTLKRTKKKSFNWYKQVIAS NGENLTTE >gi|307679199|gb|GL457048.1| GENE 4 5262 - 6080 1032 272 aa, chain + ## HITS:1 COG:lin0517 KEGG:ns NR:ns ## COG: lin0517 COG0406 # Protein_GI_number: 16799592 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 1 269 1 270 270 289 58.0 5e-78 MKKRLTIVGMLFLAILVMVGCGKNQQATTKEKETKPEELTLYIVRHGKTMLNTTDRVQGW SDAVLTPEGEKVVTATGIGLKDVAFQNAYSSDSGRALQTAQLILDQNKAGKDLEVVRDPD LREFNFGSYEGDLNKTMWQDIADDQGVSLEEFMKNMTPESFANSVAKLDQQREESKNNWP AEDYATITKRLKKGLDKIVATESANPGNGNVLVVSHGLSISALLATLFDDFKVPEGGLKN ASVTTIHYKNGEYTLDKVNDVSYLEAGEKESK >gi|307679199|gb|GL457048.1| GENE 5 6415 - 6516 57 33 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTIVVLVNEIGCYLLSKLYKAVTMLAYISNVSL >gi|307679199|gb|GL457048.1| GENE 6 6700 - 6942 64 80 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|312900590|ref|ZP_07759889.1| ## NR: gi|312900590|ref|ZP_07759889.1| conserved hypothetical protein [Enterococcus faecalis TX0470] conserved hypothetical protein [Enterococcus faecalis TX0470] # 1 80 1 80 80 95 100.0 2e-18 MARKQWFIVKSMLLSFLILGVLSFIFKEYIFENVGLLRASLALIVFFIGEYIYLDYTLSN NRALLICSVLIFLLSASLLF >gi|307679199|gb|GL457048.1| GENE 7 7164 - 7907 673 247 aa, chain + ## HITS:1 COG:L130660 KEGG:ns NR:ns ## COG: L130660 COG0596 # Protein_GI_number: 15673278 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Lactococcus lactis # 6 241 9 245 249 217 49.0 2e-56 MKNRTKSRWKKIVLGLGLFLVILVIGLTIFIKNSTYQATDSALKISQSATQEKNYDYYTN GQKNDTALIFYPGALVAPASYSEWAQEVATKGYDVYVVHLPLNLAVLAPNAAEQIIKDHP QQNFVLAGHSLGGVMASRFVAENEQRIKGMIYLASYPDEKGALNKQDLPVLSITATNDGV LNWTSYQKAKQFLPKDTQYVSIEGGNHAGFGNYGVQKGDNKATISNEQQQTEISQLIVAW LQSRPNK >gi|307679199|gb|GL457048.1| GENE 8 7925 - 8491 459 188 aa, chain - ## HITS:1 COG:lin2345 KEGG:ns NR:ns ## COG: lin2345 COG2169 # Protein_GI_number: 16801408 # Func_class: F Nucleotide transport and metabolism # Function: Adenosine deaminase # Organism: Listeria innocua # 3 185 2 184 184 190 48.0 1e-48 MKTTYRLTQKRWEAIQNNNTQFDGDFFYGVTTTKIFCRPSCPSRVPNKNHVLIFKTAQEA LTLGFRPCKRCQPTGQVVPNEEWVAQIKQFIDRHSAEPLSLDYLAQACHGSPFHLQRTFK EQTKQTPLAYLTSIRIRQAQELLLHSPLTIQQIAKKVGFQTAAYFATTFKKETGVTPSVY RSKNEPKK >gi|307679199|gb|GL457048.1| GENE 9 8630 - 9121 572 163 aa, chain + ## HITS:1 COG:lin2344 KEGG:ns NR:ns ## COG: lin2344 COG0350 # Protein_GI_number: 16801407 # Func_class: L Replication, recombination and repair # Function: Methylated DNA-protein cysteine methyltransferase # Organism: Listeria innocua # 3 162 2 152 160 157 51.0 8e-39 MAKKIYYAQQEWQNDHYYLGVTDAGLAFVGSANQSIEELKNWYPQAQLEASEKKTAPYKE ALISYLNQHSTTFACPIDIKGTPFQKEVWQALQEIPYGETMTYQEISEKIGRPRAVRAVG TAIGKNPLLMVIPCHRVIGSKGQLTGYRGGLAMKQALLTFEQS >gi|307679199|gb|GL457048.1| GENE 10 9134 - 9646 255 170 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) [Campylobacter concisus 13826] # 10 162 20 172 185 102 33 5e-21 MNNYQWYTEQWGKPTREDDLLFLLLTVGVFQVGLSWKAAAGKKVAFMKNFCQMKPEKVAA LLPDEVDRIVADPDMIRNRRKIEATIKNAQAILKVQEEFGSFANYLWQFVKNVPVLSIYE EAYQVPRTQLLSDNVAKDLKKRGFSFVGPIVTNMFLKASGIIQVEILNPE >gi|307679199|gb|GL457048.1| GENE 11 9659 - 10333 749 224 aa, chain + ## HITS:1 COG:BH2835 KEGG:ns NR:ns ## COG: BH2835 COG1418 # Protein_GI_number: 15615398 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Bacillus halodurans # 11 222 3 213 215 216 51.0 3e-56 MFENESLSFEEQTIIQAAERYVQQELANEASGHDWWHIYRVTQLAKTIAEKEQANLFLCI LTALLHDIGDEKFNESEEAGLLKVQQWLEANNVSTEQTNHILSIIANMSFKGGNTGKTVT TLEGKVIQDADRLDAIGAIGIARVMAYSGNKGRLIHDPHKQPREQLTQEEYRNGEDTAIM HFYEKLLKLKEQMNTNYGRLLAEKRHQFMELYLEEFYQEWDGHR >gi|307679199|gb|GL457048.1| GENE 12 10476 - 11411 1072 311 aa, chain + ## HITS:1 COG:L67760 KEGG:ns NR:ns ## COG: L67760 COG0053 # Protein_GI_number: 15673428 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted Co/Zn/Cd cation transporters # Organism: Lactococcus lactis # 1 310 1 310 314 392 69.0 1e-109 METKKSSGMFAVIAALIANILVAISKFVGFALSGSTAMMNESIHSVVDCSNQVLLLFGNK RASRGQSALHQFGEGRAKYFFSTIVATMLFFGGGALGVMEAIQKLLHPSHEVENVAIVIG ILIFGLLVEGSSLRVAMKEIKELNTEKLSLLKFLRESRHSEILIIFTEDFCAVIGLCLAL VGTLLTMVTGIAAFDAISGLLIGLLLMCAAIFLAKEFYSLIIGESVTATDLAKIKTAFDR ADVEKLIDVKTVHLGPTEILVAAKIDVVEPMEEDAPDVVNAIERDIRSKMPDKKIYIYIE VDDYDVNYVRK >gi|307679199|gb|GL457048.1| GENE 13 11456 - 11854 359 132 aa, chain + ## HITS:1 COG:no KEGG:EF0281 NR:ns ## KEGG: EF0281 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 132 1 132 132 242 96.0 3e-63 MQEAIITSTVDLTSGGCNACGLVEDTVYTLAMNGVDIPLDGLTVAHLVSAVVARNGFKQE LQMDMLDDEYILYRKEDTAVTFKETYNHLSYDNGSEKIQSKNKLEDLPKLFEQVNQILTT VFGIETVNFIIE >gi|307679199|gb|GL457048.1| GENE 14 11952 - 12704 1005 250 aa, chain - ## HITS:1 COG:L161132 KEGG:ns NR:ns ## COG: L161132 COG0623 # Protein_GI_number: 15672548 # Func_class: I Lipid transport and metabolism # Function: Enoyl-[acyl-carrier-protein] reductase (NADH) # Organism: Lactococcus lactis # 1 250 1 250 250 337 71.0 1e-92 MFLQNKNVVVMGVANKKSIAWGCAKALKDQGANVIYTYQNERMKKQVVKLADENDLLVEC DVASDASIQAAFETIKNEVGTIDGLVHAIAFAKKEELSGNVSDITRDGFLLAQDISSYSL LAVTHYAKPLLNPGSGIVTLTYLGSERAIPNYNMMGIAKASLETAVKYLAFELAADKIRV NGISAGAIKTLAVTGVKDYDQLISISNERTPDKTGVTIEEVGNTCAFLVSELASGVVGDI IYVDKGVHLT >gi|307679199|gb|GL457048.1| GENE 15 13002 - 14240 1580 412 aa, chain + ## HITS:1 COG:CAC3573 KEGG:ns NR:ns ## COG: CAC3573 COG0304 # Protein_GI_number: 15896807 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Clostridium acetobutylicum # 2 410 3 411 411 439 56.0 1e-123 MKRVVITGMGAVTPLGNTVKEFWHNLVDGKLGIGKITKFDSEDTGVALAGEVKEFDPSAV LEHKEQKRMDLFSQYGLVAALEAWEMSGLTEATIDPTRLGVIVGSGIGGMTTLQDQVRVM DKKGAKRVTPFFVPMVIANMAAGNISIRLGAKGPSQTIVTACASATNAIGEAFRTIKYGL ADMMVTGGTEATVCEIGIAGFAALNALNTTEDATRASIPFDKERKGFVMGEGAGMLVLEE LEHAQKRGATIYGEIVGYGSNCDASHMTAPLKDGSGAAAAMEMAIAEAGITPEQIGYINA HGTSTPANDAAETTAIKRVFGERASQIPISSTKSMTGHLLGAAGGIEAIACVQTLQEGKA HPTVGYQVADPDCDLDYVTEGARDITADYTISNSFGFGGHNGVICLKKWEEN >gi|307679199|gb|GL457048.1| GENE 16 14242 - 14676 665 144 aa, chain + ## HITS:1 COG:L160425 KEGG:ns NR:ns ## COG: L160425 COG0764 # Protein_GI_number: 15672547 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases # Organism: Lactococcus lactis # 2 142 4 143 151 197 71.0 6e-51 MKKVMTATEIMEMIPNRYPICYIDYVDEIIPNEKIIATKNVTINEEFFQGHFPGNPTMPG VLIIEALAQVGSILILKMDQFEGETAYIGGINKAKFRQKVVPGDVLKLHFEIVKLRDFVG IGKATAYVEDKKVCECELTFIVGR >gi|307679199|gb|GL457048.1| GENE 17 14768 - 15658 325 296 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|255970899|ref|ZP_05421485.1| ## NR: gi|255970899|ref|ZP_05421485.1| predicted protein [Enterococcus faecalis T1] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9504_01096 [Enterococcus faecalis TX0102] predicted protein [Enterococcus faecalis T1] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9504_01096 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9495_02132 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9502_00801 [Enterococcus faecalis TX0031] hypothetical protein HMPREF9503_00491 [Enterococcus faecalis TX0043] hypothetical protein HMPREF9508_01303 [Enterococcus faecalis TX0312] putative membrane protein [Enterococcus faecalis 62] # 1 296 1 296 296 513 100.0 1e-144 MLKNLQPQFFKQIVIYGLLFVFWGTLNYFFESIPKGLNRIVFGILSFTYIFLYMKNRKSV SGNKGDLAIWILIISGFFALVDVTYYLNIRGKITLYFSLVYILSIILIFIVCELKSDPKI KLKNILKISAVVYSLGFFDRDWWTVIPLFTAFVLLFYSKEGIDYFAQEELTEIKIPNFLQ KKWRRTKFLIVIWSVMLYSSFVISDILESCGWINKISLYFFPEDSLEFYRIWFSKGLIRL CILGIIYILGKKYLLKFKPVNTLIELYKEVARTNETEFKRNTKKHQIQKNARRKYK >gi|307679199|gb|GL457048.1| GENE 18 15750 - 16685 1223 311 aa, chain + ## HITS:1 COG:L192589 KEGG:ns NR:ns ## COG: L192589 COG0167 # Protein_GI_number: 15673534 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Lactococcus lactis # 3 311 2 311 311 438 67.0 1e-123 MDISVEFSGHKLANVLMNASGIHCMTIKEMDELAASQAGAFVAKTATPNPRQGNEEPRYF DTPLGSINSMGLPNLGIDYYLDYQIARQKEFPEELRFLSVSGMNYEENIAILKKVQESEY TGVTEFNLSCPNLPGKPQIAYDFELTEKLLTEVFQFFTKPLGVKLPPFFDIAHFDAMAEI LNKFPLVYVNSINSIGNGLYIDSDKEEVVIKPKGGFGGLGGEYVKPTALANVRAFAQRLK PEIKIIGTGGITCGKDVFEHLLCGATLVQVGTQLHQEGPQVFERLAKELQEIMAAKGYES IEEFRGKLKEM >gi|307679199|gb|GL457048.1| GENE 19 16726 - 17373 642 215 aa, chain - ## HITS:1 COG:no KEGG:EF0286 NR:ns ## KEGG: EF0286 # Name: not_defined # Def: fibronectin-binding protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 215 1 215 215 419 99.0 1e-116 MNPTIQPYQFNIIKEQVAVLLNTYTSVNDATTVKTVQALCVEKINGLFPEEHPAVTILLD KVMDRRLTRARAEKYLDELKETVLPFKEPSTPQVTKVFRKVKKLKIPEWENMDLRNNTYV GWNDAGTQKKFILAYRENKLIGVHGTLSPTIVKGVCSICQTITNVSMFLATTKSGGDGTY TKKGNYICHDSDTCNQQLTQPEYLEAFMENVKAVK >gi|307679199|gb|GL457048.1| GENE 20 17728 - 18288 814 186 aa, chain + ## HITS:1 COG:SPy1821 KEGG:ns NR:ns ## COG: SPy1821 COG0231 # Protein_GI_number: 15675650 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Streptococcus pyogenes M1 GAS # 1 185 1 185 185 258 74.0 4e-69 MIAASDLKAGMTFEQDGKLIKVMEASHHKPGKGNTVMRMKLKDVRTGSTTDTTMRPDEKV KKAHIDTKPVQYLYSQDDMAIFMDLETYEQYEVPTALIEEELKYLLENMEVKIQFYGEEV IGLTLPTTVILRVAETQPSIKGATVTGSGKPATMETGLVVNVPDFVEADELLEINTAEGT YLKRAK >gi|307679199|gb|GL457048.1| GENE 21 18458 - 18595 200 45 aa, chain + ## HITS:1 COG:no KEGG:EF0288 NR:ns ## KEGG: EF0288 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 45 1 45 45 69 97.0 3e-11 MTKKQASPFLETESCCCMVQNSAAYSFVMGKTSVISEKLPNTIPL >gi|307679199|gb|GL457048.1| GENE 22 18685 - 19602 1245 305 aa, chain + ## HITS:1 COG:HP0107 KEGG:ns NR:ns ## COG: HP0107 COG0031 # Protein_GI_number: 15644737 # Func_class: E Amino acid transport and metabolism # Function: Cysteine synthase # Organism: Helicobacter pylori 26695 # 1 304 2 305 306 394 67.0 1e-109 MIAQSILDTIGATPLFEFTSEQYPMPEGTKIYAKLEYLNPGGSVKDRLGVHLLKEAMKTG KINQATTIIEPTAGNTGIGLALAASQLGLKTIFVVPEKFSQEKQQLMQALGAKIVPSPTE QGIVGAITSAQDLAKEIPNSYVPLQFENPDNPAAYYEGLGPEIVQDLGGKITSFVAGLGS GGTFAGVGRYLKEQNSKTQLWGVEPEGSILNGGPAHGHEIEGIGVEFVPPFLKQIPVDGF YTISDEDGFFWVKQLAKKSALLVGSSSGAAFAAALREARRLPAGSTIVTIFPDGSDRYLS KNIYS >gi|307679199|gb|GL457048.1| GENE 23 19616 - 20752 1482 378 aa, chain + ## HITS:1 COG:L0181 KEGG:ns NR:ns ## COG: L0181 COG0626 # Protein_GI_number: 15672763 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Lactococcus lactis # 5 377 6 378 380 529 71.0 1e-150 MKFNTKLIHGGISKDTTTGAVSVPIYQTSTFEQNGVGQPKEYEYSRSGNPTRHALETLIA ELEGGSHGFAFSSGLAGIHAIISMFGPEDHILLGDDVYGGSFRLLDKVFVANGLSYTIVN ASDLSTIEAAIQPNTKALFLETPSNPLLKITDIEAAAKLAKKHQLLTIVDNTFATPYFQR PLALGADIVVHSGTKYLGGHSDVVSGLVVTNHPESAEKIAFLQNAIGAVLGPHDSWLVQR SLKTLGVRMAAHAQNAQKIAEFLEAHPAVATVYYPGLASHPGHEIAQKQMSGFSGMISFE LAKDEQVVPFVEALEIFTLAESLGGVESLIEVPAIMTHASIPKENREAVGIKDGLIRLSV GIEAVEDLLADLEKGLQA >gi|307679199|gb|GL457048.1| GENE 24 20789 - 22219 1450 476 aa, chain - ## HITS:1 COG:L22116 KEGG:ns NR:ns ## COG: L22116 COG2723 # Protein_GI_number: 15672399 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Lactococcus lactis # 4 476 3 478 478 774 76.0 0 MSILKNDFLWGGAVAAHQLEGGWDQGGKGVSVADVMTAGAHGVPRKITAGVLPDEHYPNH EAIDFYHRYQEDIQLFKELGLNCFRTSIAWTRIFPNGDEETPNEEGLRFYDALFDECLKN GIEPVVTLSHFEMPYHLVTKYGGFRNRQVIDFFVKFAEVCFTRYQKKVKYWMTFNEINNQ ANYEEDFAPFTNSGIAYQEGEDREAIMYQAAHYELVASARAVKIGHAINPDFQIGCMIAM VPIYPYSCNPEDMMMSVSAMQKRYWFTDVHVRGHYPSAIQCYLKRKNISLDVTEEDLTDL ANGCVDYIGFSYYMSFAVKGAEKAPTFDYNEAKDLVRNPYVATSDWGWQIDPMGLRYAMN WFNDRYELPLFIVENGFGAIDELEPDGTINDTYRIAYLREHIEMMKEAVAYDGIDLMGYT PWGFIDLVSASTGEMKKRYGFIYVDKDNDGHGTLERRKKKSFAWYQQVIATNGEEL >gi|307679199|gb|GL457048.1| GENE 25 22246 - 23580 1234 444 aa, chain - ## HITS:1 COG:CAC0386 KEGG:ns NR:ns ## COG: CAC0386 COG1455 # Protein_GI_number: 15893677 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Clostridium acetobutylicum # 5 426 7 444 450 411 51.0 1e-114 MNEWINEKLLPPVLKFVNTKAITALRNGMLYTMPFTIVGSVFLLLANFPVTAISEWVNAS GLAVYFNQAYGASFAIMSLFAVIGIAYSYVKSEGFEGLPAGMIAMVVFILFMSSEVKDAV SGAVVGNVINKDWTAGKGMITAIIVGLLVGVVYSWFLRHDIRIKLPEAVPENVANSFTAL IPASVIVTGAMLIFILLDKVFNTTFFDFIYEVLQSPLQGVTDSLGGALLLGFVIPLFWFF GVHGSTIVGGIMGPILQANSLENTEILKSGKDLTLANGGHIVTQQFLDQFLTVTGAGMTI GLVVFMVFFAKSAQFKQLGRLSIGPAVFNINEPIVFATPIVMNPIMAVPFIITPIVSSVV TYFALYTGLVPLFTAVQVPWTTPPIISGLLVGGWQAALLQVVVLTMSFFIYLPFAKKMDA LNYAEETNQPITEETLEKVEAQNV >gi|307679199|gb|GL457048.1| GENE 26 23754 - 24515 641 253 aa, chain - ## HITS:1 COG:L17893 KEGG:ns NR:ns ## COG: L17893 COG1737 # Protein_GI_number: 15672394 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 1 241 2 241 248 207 42.0 1e-53 MFDLEKVQTLNELEMLVYHYVLEHLHQIPQQTIRQLATSCHVSTSTILRFCNKMGYAGFS ELKYAVKEEAKQTQTFENFYDATVHVDAFLKKLNQETYYEMLRPAIQMIVQARHVAFTGI GTSGILGSYGSRYFANLNINSYSIADPFTPIPKRGFENTLALILSVSGETNEMIKQMTDF KTAGAKVLSITNNQHSTIARLADYNISYYMPDERSPFADKSVNTTTQIPVIALIELLAHQ ASQLLKELDETPF >gi|307679199|gb|GL457048.1| GENE 27 24762 - 25304 529 180 aa, chain + ## HITS:1 COG:BS_ywjB KEGG:ns NR:ns ## COG: BS_ywjB COG0262 # Protein_GI_number: 16080775 # Func_class: H Coenzyme transport and metabolism # Function: Dihydrofolate reductase # Organism: Bacillus subtilis # 1 176 1 173 174 122 39.0 3e-28 MAREVILFIAASIDGFIADKAGGVAWLEENIRGDEEDRSYDEMYEKIDTVVMGRTTYDQV TQELSPDVYFYEDKHSYIITSHPEPSTASRTFTKEDPVTLIRRLKEEDGAGIWIVGGPKV VQPLLAADLIDTFILTTIPLFLGEGIALYETMAQSIPVRLKQVYQKNELVYSIYQRENKK >gi|307679199|gb|GL457048.1| GENE 28 25436 - 26803 1276 455 aa, chain + ## HITS:1 COG:BS_yubG KEGG:ns NR:ns ## COG: BS_yubG COG0168 # Protein_GI_number: 16080162 # Func_class: P Inorganic ion transport and metabolism # Function: Trk-type K+ transport systems, membrane components # Organism: Bacillus subtilis # 2 455 5 445 445 284 41.0 3e-76 MKHQIKRRLYISPVQTIVLGFFLLIVVGTILLMMPFSAQAGQKTQWIDAFFVATSAVCVT GLSPLNTAEHWSPIGQVIIMILIELGGLGFLTVATIFFSLLRKKASLSVRMLYQEALNVS EVSGVFRLMKYIMKFAAIIQLLGAFLLSFQFVPTFGWKKGLFFSLFHAVSAFCNAGFDLL GDSMVPYQNSPYLLLVISFLIIAGGLGFIVWRDIFTMIKGYKNKIKHRVSIHTRLALTVT ATFLVLGTVIFYISEYRHFPADMSFWQRLVNSWFLSVTPRTAGFYSVDYLKMSNPGLIVT ILWMFIGGTSGSTAGGLKTTTFGVLFLQFRAIFKGKQRVEFHERTIPERVVLQAFTLFFL ATFLCVTASVILSFTETLPLKNGIEYIVFEVISAFGTVGLTMGLTPDLTVFGKLVIIFLM FVGRVGVYTVLLSLIKKGLESQSKVQYPKESVMIG >gi|307679199|gb|GL457048.1| GENE 29 26824 - 27987 1527 387 aa, chain + ## HITS:1 COG:L176399 KEGG:ns NR:ns ## COG: L176399 COG0475 # Protein_GI_number: 15673897 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Lactococcus lactis # 7 384 7 379 379 239 43.0 8e-63 MEFLGILCLILITTTLAGVACKRVGIPAVIGQLLVGIVLGPAMLNIVHQDVFVHDFSEIG VIMLMFIAGMECELELLKKYAKPSVMVAILGIVLPVGFTMLIGQLFAFSWKEAFFLGLVL AATSVSISVEVLRELNVLSSKEGATILGASVVDDIVVVIILSVAVGMIGASTGGNTEVSF IVKLIEQGLFFIGIFFLVRFIAPYLLRLSQKMNIGSSVIIMSLIICLGMAYLADLVGLSS VVGAFFAGIAVGQTDAKTEIDFNIEAIGYAVFIPVFFASIGLSVTFNTLGKDLPFILVMT IMAILTKLLGGAWGAKMVGFSNTSSLMVGAGMVSRGEMALIIAQIGYQSKLLSEAYYTSM IVVIILTTLVAPFLLKYFVKKQESALQ >gi|307679199|gb|GL457048.1| GENE 30 28116 - 28556 385 146 aa, chain + ## HITS:1 COG:SPy1717 KEGG:ns NR:ns ## COG: SPy1717 COG3682 # Protein_GI_number: 15675568 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Streptococcus pyogenes M1 GAS # 6 144 1 139 144 100 35.0 1e-21 MAKDKLATITDAEWEVMRVIWTQGKTTSREVHTLLNEKKEWKSTTVKTLLSRLTDKGLVG TEKVGNKYIYYPLVEERRSVETVADELLAKVCSRKVGSVVETILTESQLSYDDLDRLEEL LKEKRKTAVESVPCNCIPGQCQCHLI >gi|307679199|gb|GL457048.1| GENE 31 28572 - 31058 2899 828 aa, chain + ## HITS:1 COG:CAC3655 KEGG:ns NR:ns ## COG: CAC3655 COG2217 # Protein_GI_number: 15896888 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Clostridium acetobutylicum # 1 817 1 814 818 943 63.0 0 MESKTFDIEGMSCASCAQTIEKATAKLPGMAKASVNLATEKLSVTYDQTEVTEEEIKEAV SDAGYKAISPAQQRTFAIEGMSCASCAQTIEKAVNQLSGVQQAIVNLATEKLVVSYDDHQ VTSAEIIKAVTDAGYQATEEVAAGATADQDREKKQKHIAEMWQRFWISAVFTVPLLYIAM GHMVGLPLPDFLNPMTHATIFAMVQLILTLPVLYVGREFFTVGFKALFKGHPNMFSLVAL GTSAAFVYSLYGTVMIFLGDTSFTMALYYESAGVILTLITLGKYFEAVSKGKTSDAIKKL MGLAPKTAHILRDGAEIEVPVDAVQLDDIVIVRPGDKIPVDGVIVSGSSSVDEAMLTGES LPVEKKVGDAVIGASINKNGSFQFKTTKVGKETALAQIIQLVEDAQGSKAPIAQLADKIS GVFVPIVIGLAVLSGLAWFFLGQESWIFALTITISVLVIACPCALGLATPTAIMVGTGKG AENGVLIKSGDALETTHKIQTIVFDKTGTITEGKPVVTDILVADSALSEAELLTLAASAE QGSEHPLGEAIVGAAKERQLPLAEGSDFSAIPGHGIRVTVNERVLLLGNIKLMKEEAIEL STFVQQADRLAEEGKTPMFVAKDGSFAGIIAVADTVKDSSQTAIARLHKMGIEAVMITGD NKRTAEAIAKQVGIDRVLSEVLPEDKALEVKKLQAEGKKVAMVGDGINDAPALAQADVGI AIGSGTDVAMESADIVLMRSDLMDVPTAVELSKATIKNIKENLFWAFAYNTLGIPVAMGV LHLFGGPLLSPMIAAAAMSFSSVSVLLNALRLKGFKPSTVKRTSGSQK >gi|307679199|gb|GL457048.1| GENE 32 31080 - 31286 273 68 aa, chain + ## HITS:1 COG:no KEGG:EF0299 NR:ns ## KEGG: EF0299 # Name: copZ # Def: copper transport protein CopZ # Organism: E.faecalis # Pathway: not_defined # 1 68 1 68 68 103 98.0 2e-21 MEKTVKIDGMKCDGCVQAVTEKFSGIDGVTNVAVHLADQTAIVTADREVSQDELNTTLAD TKFKVVSE >gi|307679199|gb|GL457048.1| GENE 33 31331 - 32701 1019 456 aa, chain - ## HITS:1 COG:no KEGG:EF0300 NR:ns ## KEGG: EF0300 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 456 1 456 456 824 99.0 0 MAVFFYFILVSVAFFMAFTMGIYANPHKNIILENTLPEDKLQDPSVQAIRKRYKKRLVQL AAVFSVLSLPLLFIPYDSILLFLFLLLLFSFIGSGYYLQIVYIRKMAALKMQNGWLLPKR PLLIDTQLVLNKNQKLISFWWFLPAIILTFAGGFYSLQTAIGSWILFLITVLMLSLFIGG YYFIARLPVKPLTSDSKINQQINDLFRHHWSVLMVLSSLVFAPLTILPTFTIVIDYTVAM ALTFCYFILLFVYVGFLFYYLFSMRKKQDQFVLQAGDYRYGDDDQYWRYGIYINPKDPKI MVPDRIGMNLSINLGRPAGKIILAATGILTIAVLFFATVPMFINDFSSHAFQATIENKQI ELSAPLAKTRSIPFNQITAVSLIDDLPQERIRTMGAATDSYLTGEFKVAGKPAYLLIYTK SHPILKIETREKVYYYTAREGQETTKIYQEIKAKLP >gi|307679199|gb|GL457048.1| GENE 34 32701 - 33090 465 129 aa, chain - ## HITS:1 COG:CAC0599 KEGG:ns NR:ns ## COG: CAC0599 COG1725 # Protein_GI_number: 15893888 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 1 124 1 125 125 104 44.0 4e-23 MLLEIDEQSEQPIYQQLIDQIIVGIAKGELVPNESLPSIRQLADEIGVNMMTVSKAYNKL KQSGYIVTDRRNGTKIAAKLPATAVWQQQLHERLELLLAESFLHQQSEAEIQALIQKIYQ NFDSKGRAL >gi|307679199|gb|GL457048.1| GENE 35 33240 - 34568 1518 442 aa, chain + ## HITS:1 COG:SPy1651 KEGG:ns NR:ns ## COG: SPy1651 COG3579 # Protein_GI_number: 15675522 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Streptococcus pyogenes M1 GAS # 1 442 1 443 445 561 61.0 1e-160 MTAIEPKLTEKFHQDFLNNNKQNALQRSVVKNGISASGESVQGAVNNVPVFSVDLATGKV ANQKQSGRCWMFAALNTFRHRMLNAFQLKDFELSQNYTFFWDKYEKSNYFYENIIATADQ PLTSRKVAFLLATPQQDGGQWDMIVSIFDKYGVVPKTAMPESSNSSNSRDLNNYLNKKLR KDATILRSLIEKGASAEEVQKNKEAMLQEIYNFLAISLGTPPETFDFEYRDEEKNYHLDQ NLTPQTFFEKYVGVNLHDYVSIINAPTEDKPFNKTYTVEMLGNVVGGKEVKYLNVEMAAF KKLAAAQLEQGESVWFGCDVGQSSTRDTGIMALDVYDMNDLFDIDFTMTKAERLDFGESL MTHAMVLTGVDIVDGQTTKWKVENSWGEKVGENGFFVMSDAWMDEYTYQIVVHKDLLTDE QKKAWEQAPTVLAPWDPMGALA >gi|307679199|gb|GL457048.1| GENE 36 34611 - 35231 739 206 aa, chain - ## HITS:1 COG:L81206 KEGG:ns NR:ns ## COG: L81206 COG1853 # Protein_GI_number: 15672060 # Func_class: R General function prediction only # Function: Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family # Organism: Lactococcus lactis # 1 205 1 195 196 181 45.0 1e-45 MIHYNSNELSAKTAYKFLSGSIIPRPIAWVTTQDTATGIVNAAPFSFFNAAAAEIPLATL SILRPDKAPKDTARNILATKELVIHFVNEDVLTQMNQTSAPLAAEISEIDTFGIETIASQ TVAVPAIKAAPIRMEARLHQYIPIANHEGQIITDLFIVEITDFYFDSAVFDEEHQYILPE KLQPIARLAGNDYTTLGEIREVRRPT >gi|307679199|gb|GL457048.1| GENE 37 35253 - 36227 1202 324 aa, chain - ## HITS:1 COG:lin0753 KEGG:ns NR:ns ## COG: lin0753 COG0346 # Protein_GI_number: 16799827 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Listeria innocua # 7 316 7 316 319 414 63.0 1e-116 MNTQILGLHHVTAMTSSAEKIYHFFTDILGLRLIKKTVNQDDIETYHLFFADDAGSPGTD MTFFDFPGLPKGTKGTNTISRTSFRVKDDAALDYWVSRFNEYVIDHGEIQERFGKKYLEF EDFDNQRYQLISDEKNQGVAAGTPWKKSNVPSEHALIGLGPAFVTVENYEHLQLVLTEVL GFKLIDAEGSFHLFEVGEGGNGASIIVEHREDLPAAQEGYGNVHHLALRVADEEALRFWI EKINRLEFPNSGFVERFYFKSEYFLAATHVLFELATDGPGFLEDETYEHAGEKLSLPPFL EPKRAGIEEFVRPFDTSDANVQRN >gi|307679199|gb|GL457048.1| GENE 38 36514 - 36849 444 111 aa, chain + ## HITS:1 COG:BH0686 KEGG:ns NR:ns ## COG: BH0686 COG2076 # Protein_GI_number: 15613249 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Bacillus halodurans # 1 111 1 111 114 85 49.0 3e-17 MSKAWLKVIFGAFCEVIWVIGMKHSTTWWEILGTVIAIFISFYALIKAGEELPVGTAYAV FVGLGSAGTIVTDHFLFHTPLGIGKVLFLLLLLIGVIGLKMVTGNKEEETR >gi|307679199|gb|GL457048.1| GENE 39 36846 - 37157 564 103 aa, chain + ## HITS:1 COG:BS_ykkD KEGG:ns NR:ns ## COG: BS_ykkD COG2076 # Protein_GI_number: 16078375 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Bacillus subtilis # 1 102 2 104 105 84 46.0 3e-17 MSWLYLVIAGCFEIFGVGSIKLFTTKKDLRSLLILILAFSGSFLFLYLGMRQLPMGVSYA VWTGIGTAGGAILGMLLGESKDLRRIFFIFLIIVSVIGLKLIG >gi|307679199|gb|GL457048.1| GENE 40 37253 - 38299 1033 348 aa, chain - ## HITS:1 COG:lin1996 KEGG:ns NR:ns ## COG: lin1996 COG3469 # Protein_GI_number: 16801062 # Func_class: G Carbohydrate transport and metabolism # Function: Chitinase # Organism: Listeria innocua # 11 347 13 349 352 451 66.0 1e-127 MKLKKIIPAFLLLSTVAVGLWLTPTQASADAADTMVDISGKKVLVGYWHNWASKGRDGYK QGTSASLNLSEVNQAYNVVPVSFMKSDGTTRIPTFKPYNQTDTAFRQEVAQLNSQGRAVL LALGGADAHIQLVKGDEQAFANEIIRQVETYGFDGLDIDLEQLAITAGDNQTVIPAALKI DKDHYRAQGKNFIITMAPEFPYLKPGAAYETYITSLNGYYDYIAPQLYNQGGDGVWVDEI MTWVAQSNDALKYEFLYYMSDSLIHGTRGYLQIPNDKLVLGLPANRDAAGSGYVVEATPV AKTFDQLAKDGNPIRGLMTWSANWDVGQDVNGKSYNNEFATRYSNLVK >gi|307679199|gb|GL457048.1| GENE 41 38342 - 38926 732 194 aa, chain - ## HITS:1 COG:lin2611_1 KEGG:ns NR:ns ## COG: lin2611_1 COG3397 # Protein_GI_number: 16801673 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 8 193 7 191 294 170 47.0 2e-42 MKKSLLTIVLAFSFVLGGAALAPTVSEAHGYVASPGSRAFFGSSAGGNLNTNVGRAQWEP QSIEAPKNTFITGKLASAGVSGFEPLDEQTATRWHKTNITTGPLDITWNLTAQHRTASWD YYITKNGWNPNQPLDIKNFDKIASIDGKQEVPNKVVKQTINIPTDRKGYHVIYAVWGIGD TVNAFYQAIDVNIQ >gi|307679199|gb|GL457048.1| GENE 42 39200 - 39934 979 244 aa, chain + ## HITS:1 COG:SP1408 KEGG:ns NR:ns ## COG: SP1408 COG3884 # Protein_GI_number: 15901262 # Func_class: I Lipid transport and metabolism # Function: Acyl-ACP thioesterase # Organism: Streptococcus pneumoniae TIGR4 # 1 242 1 239 245 177 39.0 2e-44 MGKKHTSSYEVAYYDGDFTGAMKIPALLAVVIKVSEEQTELLGRDAAYVAQFGLGWVITN YEIEIHRLPKVGEKVAITTQAMSYNKYFCYRNFWVHDEEGNECVFVKSTFVLMDQKNRKI SSVLPEIIAPFDSEKITKIYRHKKIEKVTEGNFLPYRVRFFDIDGNQHVNNAIYFNWLLD VLGYDFLTTHQPKKILVKFDKEVEYGQEVESHYEIVEQENQLKTRHEIRIDGQTYCEANI DWTN >gi|307679199|gb|GL457048.1| GENE 43 39985 - 40818 828 277 aa, chain + ## HITS:1 COG:lin2505 KEGG:ns NR:ns ## COG: lin2505 COG1801 # Protein_GI_number: 16801567 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 277 2 279 281 261 46.0 9e-70 MIRLGLTSFSEHDYLTGKKRATLYEYASHLPLVEMDTAYYGIPPKERVAEWVKAVPENFR FVMKVYSGISCQGEWQTYYASEEEMITAFLESMAPLIESKKLFAFLVQFSGTFGCTKENV AYLQKIRHWFKDLPIAIELRNNSWYQPNFVKQMLQFMKENQFSLVIVDEPQIPTNPVPFY PYVTNPNLVLFRFHGRNAAGWLANDAEWRKKRTLYHYNTQEIADLSEAVLKMSQEAKEVG VIFNNNSGGDAAENALQMQKVLNLSYDDLNPKQLDLF >gi|307679199|gb|GL457048.1| GENE 44 40835 - 41371 555 178 aa, chain + ## HITS:1 COG:L143879_2 KEGG:ns NR:ns ## COG: L143879_2 COG4696 # Protein_GI_number: 15672719 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 14 170 21 176 184 169 56.0 3e-42 MSEKQSPYEMACAFHEVFNPHQPEQPTAFSPELASRRAEFKVEELVEFLYSAADNDQVLF QQLVNGLKKSVDKAEQKVLAKGKPVSDPLVEEVDALVDLLYFTYGSFCLMGVNPTKIIEI VHQANMGKLFPDGQPHYDPETNKVLKPENWEQDFAPEAKIKAEIQRQLKITETNEKDE >gi|307679199|gb|GL457048.1| GENE 45 41394 - 42746 1591 450 aa, chain - ## HITS:1 COG:SP0413 KEGG:ns NR:ns ## COG: SP0413 COG0527 # Protein_GI_number: 15900332 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Streptococcus pneumoniae TIGR4 # 1 448 1 448 454 563 62.0 1e-160 MNVVKFGGSSLASAPQLQKVLQIVKEEPRRTFVVVSAPGKRTPQDIKVTDLLIQYYQRYL NNEDIESTISAIIRRYEDLFDELHLDKAVLADIAISIRQLATLPKENNTFLFDYFLASGE DNNAKVVASFFKQNGLDARYISPKELGLLVTPEPGNARILPKALEKISVYRETQQILVIP GFFGYTEAGEICTFSRGGSDITGSIVAAGVQADLYENFTDVDGIYVAHPGIIEQPQTIQE LTYREMRELAYAGFAVLHDEALMPAYRANIPVVIKNTNNPHHPGTLITTSRKVKHAPVVG IASDQGFASIYISKYLMNRELGFGRRLLEVLEKLALSYEHMPSGIDDITIVLREDQLTTE IENRLMAQLQEVLAPDELRITHHLSMIMIVGEGMRQRIGVTAESTMALAKEKINLEMINQ GSSEVSIMFGIKKEQEEKAIKALYRTFFHD >gi|307679199|gb|GL457048.1| GENE 46 42933 - 43619 936 228 aa, chain + ## HITS:1 COG:L150333 KEGG:ns NR:ns ## COG: L150333 COG0637 # Protein_GI_number: 15672725 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Lactococcus lactis # 7 219 5 217 222 175 42.0 8e-44 MTESKTAIIFDMDGVLVDSEAYYYERRKAFLAEFDLTIEGLTLPELVGADMRSLWQKIEQ VNKKELDIAFLNEQYIAYKKAHPIDYLAVLDENAKRVLQFLKRQGYKIGLASSSTKDAIE EVLTVGQLSSYFDAVVSGEDFEESKPAPDIYLHTLQELAVAPQECIAIEDSEKGIASAKE AGLEVWAMRDEHFGMDQSQADAFLTQLSDICKKISENRIDESSESTPS >gi|307679199|gb|GL457048.1| GENE 47 43805 - 45541 2114 578 aa, chain + ## HITS:1 COG:L7722 KEGG:ns NR:ns ## COG: L7722 COG4477 # Protein_GI_number: 15674133 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Negative regulator of septation ring formation # Organism: Lactococcus lactis # 20 574 19 574 576 397 40.0 1e-110 MKNNWIIILVLVIVIIAAVLYLIGYFMRKKNQEQLDELEVRKEALFDLPVFEEIDDIKKM HLVGQSQNSFREWNQRWVELSTRSFAELESQIYEVENQNEIFRFMKAKKAVVEANETMTE MEAEVEVIRNGLKELRESEERNSLEVQKALDVYEELSKSLKDDKASFGPAYSEIQKQLRN VEIEFTQFVTLNTSGDPIEAREVLEDAERHTYELEDLMKRIPPMYEELNETFPDQLKEIE EGYNQLLADDYVFPEQNFAEEIQHAKKRVENSMADLEKTEIAAVEVANRDTATAIDALYE VMEREIEAKKYVVTNQKIIDDYISHSLKNNRQLMIELDHVSQSYTLNNNELGRSRGFQTE IEEIIRRQKDLEPRMKEHTVPYSEIQAFYKECYKILDDIENQQLEIDASLKELRKGEKVA QEKVDEYEFRLRSIKRYVEKQRLPGLSADYLEFFYVATDRIEDLSRALNKMRINMDEINR LCDLCEDDLELLDKKTKDLVNAAALTEQMMQYANRYRHTHENIRAALDKSMYLFSTEFRY QDALDEIGTALEAVEPGAFKRIEDFYFKNINNPNLTAI >gi|307679199|gb|GL457048.1| GENE 48 45667 - 46812 1167 381 aa, chain + ## HITS:1 COG:L122222 KEGG:ns NR:ns ## COG: L122222 COG1104 # Protein_GI_number: 15672519 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Lactococcus lactis # 1 381 1 380 381 478 62.0 1e-135 MIYFDNSATTPIYPQALDTYVKTSQRIIGNPSSLHDLGSQANRLLQQARKQIAELIDVSA NEIYFTSGGTEGDNWVLKGTAIEKREFGNHIIISAVEHPAVTETAEQLVELGFELSYAPV DKEGRVKVEELQKLIRKETILVSVMAVNNEVGTIQPIKEISEVLAEFPKIHFHVDAVQAI GKVNYSEWLTDRVDFATFSAHKFHGPRGIGFMYWKQGKRLAPLLTGGGQENNQRSGTENV PAIVAMAKALRLHLENEQQRPQHVATLRSYLLKALEEFQNVTVFSQDNEHFAPHILCFAL KGIRGEVLVHALEEKQIYISTTSACSSRKKMASSTLYAMHVPGELATSAVRISLDESNTM AEIEQFMIVFNQLYQKFSRVN >gi|307679199|gb|GL457048.1| GENE 49 46865 - 47557 677 230 aa, chain - ## HITS:1 COG:CAC0321 KEGG:ns NR:ns ## COG: CAC0321 COG0745 # Protein_GI_number: 15893613 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 5 228 4 228 230 249 57.0 3e-66 MKPHVLIIEDDPSIADLQKDYLEINDMTVTIEHDGKKGLEAALNEPFDLIILDVMLPTMD GFEICRAIRKKKQTPIMIVSAKKEDIDKIRGLGLGADDYIIKPFSPNELVARAKAHMNRY QLLSKAEQPPQLLKINEIAVDTAAHKVFVLENEVIFTSKEYKLLVFLMEHPNRVWNKEEL FESVWGFDALDTEVSTVVVHIKRIREKLKKANLSDSPIETLWGSGYRFNR >gi|307679199|gb|GL457048.1| GENE 50 47554 - 49035 1487 493 aa, chain - ## HITS:1 COG:CAC0317 KEGG:ns NR:ns ## COG: CAC0317 COG0642 # Protein_GI_number: 15893609 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 149 488 157 493 498 206 37.0 1e-52 MTIKRRFFISYISAIIITLASVLAVLSLASYITLGTVPSLPQAYRMMNKQRPLTANEEES YLALDQLLKKSPKLLDTPLSKELKETIQTIEAKGLSVILRKNARFPYYSDNLVEKSLSVH IPNYEMNNIMPTGTLDNAGRLYHYVKSDFHYLDGSNGSFIVLKRESSLFEFFTRWIIWMI LLIILVAIAAAWLINKRLTKTTIEPLEALEKATKTLGKDAQKENPFTPTSHQTVSTEVKQ LQLSFEQMWQDLEEANAEREKYEANRKELIANISHDLKTPITSIIGYVEGLMDGVANTEE KKQRYLTVIHEKSLGLNDLIEELFLYSKLDLDRAVFTMEKTNFTRFIAHILEEYRLEQEL VITSVLPTEALYVQMDPTQMNRVITNLIQNSIKFADPTKEQLAFTISLTHNQTDLVLTIT DNGIGIDKKELPYLFERFYRVDKSRTPTVKGSGLGLSIVKQIIDYHQGTITVTSKKGDGT NVIITLPLLEDEK >gi|307679199|gb|GL457048.1| GENE 51 49221 - 50198 1295 325 aa, chain + ## HITS:1 COG:no KEGG:EF0374 NR:ns ## KEGG: EF0374 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 325 1 325 325 503 99.0 1e-141 MKKKKVFSALTLLTFSTLLIAGCAGGANSATDKSSAASSSTAVSSSAEAAKEQSKGQELT EILSSTDWQGTKVYDKNNNDLTAENANFIGLAKYDGETGFYEFFDKETGETRGDEGTFFV TDDGEKRILISDTQNYQAVVDLTEVTKDKFTYKRMGKDKDGKDVEVFVEHIPYSDEKLTF TNGRKDLETETGKIVTSEPGDDILGATLWNGTKVLDEDGNDVTEANKMFISLAKFDNKTS KYEFFDLETGKTRGDFGYFQVIDNNKIRAHVSIGDNKYGAALELTELNDKRFTYTRMGKD NNGKEIKVFVEHEPYEGDFTPDFTF >gi|307679199|gb|GL457048.1| GENE 52 50383 - 50739 474 118 aa, chain + ## HITS:1 COG:no KEGG:EF0375 NR:ns ## KEGG: EF0375 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 115 1 115 321 202 95.0 4e-51 MKKKVLSSITLVTLSTLLIAGYASPAFAGHAANPNSATANLGKHQNNGQTRGDKATKILS GTDWQGTRVYDAAGNDLTAENANFIGLAKYDGETGFYEFFDKNTGETRGDRRNIFCDR >gi|307679199|gb|GL457048.1| GENE 53 50708 - 51349 709 213 aa, chain + ## HITS:1 COG:no KEGG:EF0375 NR:ns ## KEGG: EF0375 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 3 213 111 321 321 391 100.0 1e-108 MTEGTFFVTGDGTKRILISRTQNYQAVVDLTEVSKDKFTYKRLGKDKLGNDVEVYVEHIP YHGKKLAFTNGREALTNQTGKIVTNKSGDKILGTTLWNGTKVVDKNGNDVTAANQNFISL AKFDPNTSKYEFFNLQTGETRGDFGYFQVVDNNKIRAHVSIGTNRYGAALELTELNNDRF TYTRMGKDNAGNDIQVFVEHEPYQGTYHPAFTF >gi|307679199|gb|GL457048.1| GENE 54 51568 - 52611 1119 347 aa, chain + ## HITS:1 COG:no KEGG:EF0376 NR:ns ## KEGG: EF0376 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 347 1 347 347 656 100.0 0 MKKKIVGTITLLALSALLVGGAGGALTAEAYVPQSVDNPNNLGDLPEYLRSVGIRQDEGL SEKDWAGTRVYDRNGNDLTDENQNLLHAIKFDATTSFYEFFDKETGESTGDEGTFFMTAG ITDVSRLVIISETKNYQGVYPLRTLYQDTFTYRQMGKDKNGNDIEVFVENKATSGPVYGR PQPYPNNRPRTLEFTNGRRAMTEQTGQIDVNRQGDEIIGKTSFDGTPQLLWNGTKVVDKD GNDVTSANQNFISLAKFDQDSSKYEFFNLQTGETRGDYGYFKVGNQNKFRAHVSIGTNRY GAVLELTELNDNRFTYTRMGKDNEGNDIQVYVEHEPYQGTFNPEFTF >gi|307679199|gb|GL457048.1| GENE 55 52785 - 53588 1029 267 aa, chain + ## HITS:1 COG:PA2498 KEGG:ns NR:ns ## COG: PA2498 COG0666 # Protein_GI_number: 15597694 # Func_class: R General function prediction only # Function: FOG: Ankyrin repeat # Organism: Pseudomonas aeruginosa # 75 263 19 204 210 145 44.0 9e-35 MNKKNLMGLLSVVTIPLLAACQGGETPSAASKNSQTVTTQSSAKTESTSTTRSVAQTTSK EEVKEPMKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEI AKALIDRDADINLQNSISDSPYLYAGAQGRTEILAYMLKNATPDLTKHNRYGGNALIPAA EKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIK DNSGRTAMDYANQKGYTEISKILAQYN >gi|307679199|gb|GL457048.1| GENE 56 53640 - 54851 1465 403 aa, chain + ## HITS:1 COG:ECs0373 KEGG:ns NR:ns ## COG: ECs0373 COG0402 # Protein_GI_number: 15829627 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Escherichia coli O157:H7 # 2 401 53 455 460 229 35.0 7e-60 MNYWLKNVRIETGYQKEGDWLSGTVTKEVAIEVTDGVFTKIIPNEELVEEPGLTIIDGHH QLILPGLIEKHCHFDKSKLGVPWYPVTPAKSIVERVETEIPYLDSLELSLTERANHLIDL ELPHGATAFRTHVDVEPMTDLRYFDEVQALAQTKPFAVEIVVFPQHGLLRSDSVELVDQA LAKGADFIGGVDPYSLDGDYKKSLAETFRLADKHGVGVDIHLHDRHEAGTTTIKEIIRLT KEYGLQDKVFISHAFGLNDFIGEERDEVYDALAAEKIHINSSVPITPNTIPPIMELLRHG VNVHLGCDNIYDCWSPYGDGSLQEKLARLGELFNVKDQDALTQLLGLVTDGVTTLDEQGQ ANWPQVGAEATYLLTEAECAAAFVARQTPVEISVVKGTTLYQK >gi|307679199|gb|GL457048.1| GENE 57 54961 - 55380 266 139 aa, chain - ## HITS:1 COG:SP0889 KEGG:ns NR:ns ## COG: SP0889 COG3654 # Protein_GI_number: 15900772 # Func_class: R General function prediction only # Function: Prophage maintenance system killer protein # Organism: Streptococcus pneumoniae TIGR4 # 6 112 4 110 137 92 47.0 2e-19 MKSIYYLSADDLFQMNTFLIQTYSPAEQIGIKDRNALEMASNQPAQFVFDVDLYPTIEEK AAILMINIATKHCFYNANKRTAVMATDLFLQLNGYDFQLDTQEGVDLLVFIATYRSDFDQ LKNDVSKVIRAKLNHTSSH >gi|307679199|gb|GL457048.1| GENE 58 55377 - 55616 344 79 aa, chain - ## HITS:1 COG:no KEGG:EF0380 NR:ns ## KEGG: EF0380 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 79 1 79 79 95 100.0 9e-19 MEIKERKLRKVGNSVVMTLSKEFLESIGATATDTVYVDEEKLKDIIVKKNMSEHQKKLQQ MMENSKQKHNELYKELVTK >gi|307679199|gb|GL457048.1| GENE 59 55717 - 56529 797 270 aa, chain - ## HITS:1 COG:SA0310 KEGG:ns NR:ns ## COG: SA0310 COG0657 # Protein_GI_number: 15926023 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Staphylococcus aureus N315 # 14 267 19 269 275 105 29.0 8e-23 MKNNQTLANGATVTIYPTTTEPTNYVVYLHGGGMIYGTKSDLPEELKELFTSNGYTVLAL DYLLAPNTKIDHILGTLTETFQLLNEEIIQNQPFGLCGRSAGGYLMLQLTKQLQTLNLTP QFLVNFYGYTDLEFIKEPRKLLKQAISAKEIATIDQTKPVWDDPFLSRYLLYHYSIQQAL LPHFYGLPENGDWSAYALSDETLKTFPPCFSTASSSDEEVPFRYSKKIGRTIPESTFKAV YYLEHDFLKQTKDPSVITLFEQLDSWLKER >gi|307679199|gb|GL457048.1| GENE 60 56504 - 58096 1083 530 aa, chain - ## HITS:1 COG:BS_yunI KEGG:ns NR:ns ## COG: BS_yunI COG2508 # Protein_GI_number: 16080295 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Bacillus subtilis # 1 520 1 528 531 103 22.0 6e-22 MKLRELLSIGDLKKGKILTKEIGLDNEVDSAMVLEAIDIENWSRKNQLILTSFYALHDLP EKELENFFVKMRRIGISGLILKTDRFIKMIPEWFIELCFNYEIPLIKITQDISYEKILFT IYEPLLNYQSHVLRTYYDVRQRFTKLERHYPTVETIMQEFYDIIKLPFALKMLDKHLEIS DGDLPHDAIVLSREKLKNSEFTKNDYSLLTLYSHANPKKQLALEVSIFNSYSTNCLLLVY LQDEKVKETDLVIIENAIDVLQEKFNTENLLKKERYTRLNNLADAILQNTPQNPDELNSL LREVQMQELDSYQAIAFSTKDTNTQLMKERIIALLRTLRVKSIFFDQLNYSAVLFNFNES DGKITKLQLSRLLAELLEENDTLTVAVSSLKSREGIKELLIECLDILRFNETFYNGPIVT LADIGVFKNFIREDQLENLDELIPRALYQLAENNYDLFETLYSFFQNNRNYKQTSEAMFL HSKTIRYRLNKVEQLLDIDLANPLQLLNYEIATYIIKMRRRALEKQSNTR >gi|307679199|gb|GL457048.1| GENE 61 58219 - 61230 4028 1003 aa, chain + ## HITS:1 COG:ECs0580 KEGG:ns NR:ns ## COG: ECs0580 COG0074 # Protein_GI_number: 15829834 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, alpha subunit # Organism: Escherichia coli O157:H7 # 1 579 1 555 555 369 38.0 1e-101 MLHTVILKNNYQDSINLMLLTNKINALDGVTMSQIMMGTDANKDILNNTNLLTDEANSAS ANDMMIVVDSEKENIMEEVMPAIDEFLDDLSAKGTSEEAQAATSWSEAFDLLPEANVALF SIPGEYGAPEMERALKNDLHVFSFTDNVSIEDEVRLKKLAHEKGLLMMGPDCGTGIISSI PIAFTNVVSPGNIGVVGASGTGIQEVTTIIDRLGGGVVHAIGTGGRDLSDKVGAITVKDA IVALENHEPTDVITVISKPPAKEVRDEVVELLQSISKPVVAIFLGEKPTSHEGKVYLAHT LEETAKIAVDLANDVAVKKNYFEALAKPAVPTLPEDKVVKGLYSGGTLASEAGMLISEAL DLGGLVKAEGYVLKSHGYEVIDLGDDMYTQGRPHPMIDPDVRIEKIREYAQDEKTGIILF DVVLGYGAHEDMVGALLPAIEEARATAKEAGRDLYFVATVCGTTKDPQNYQSSVDRLKEG GVLVAESNAKAVQLALLLKGIEISEDDKEVVAYNGPTVDVPKPGEKVMELLTTKPRIINV GLQSFTESIVDYGGETVQFNWRPRANGNKKMIKILDALEDYSEQIEAENHKVTDKIKNAQ PFLVDVVPAKSVIPELNDDAQKTLLHAGPPIQWSEMTGPMKGACIGAALFERWADNEEDA LKIFEAGEVRFIPCHHVKAVGPMGGITSGNMPVFVVENRLEGNEAYCILNEGIGKVLRFG AYSQEVVDRLDWIKDVLGPTIAKALKLSEEGLNLNVLIARSITMGDEFHQRNIAASLNFL KELSPLIIKTDIPEDQKYEVIKFLADTDQFFLNVMMATGKAIVDGARKDTNGTIVTTMTR NGVNFGVRIAETGDQWHTAPVNTPKGLYFTGFSEEDGNPDVGDSAITETVGVGAMAMVAA PGVTRFVGAGGFEDALATSNEMAKICEGHNPTFSIPTWDFQGTCLGIDIRKVVELGITPI INTGIAHKNAGVGQIGAGTVRAPLGCFEKALEAYAEKLGITVE >gi|307679199|gb|GL457048.1| GENE 62 61223 - 62056 529 277 aa, chain + ## HITS:1 COG:no KEGG:EF0384 NR:ns ## KEGG: EF0384 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 277 1 277 277 467 100.0 1e-130 MNNQLVISDYIFPIHQYGKMGTIHSVFERSFNLKVQDQLINVANFHNYLSSFGMFLPDQL FQEIFPYVQQGNKVKITENQLTFYSTVGVKTIQLTPAEVVSLNITHFKLEKDQLRLLRDR LLARNLERRIGLPLDERAKHIFKKMSQKQKVWTLSEWQEVTNYLIGRGKGLTPSGDDILV AYQTILFILADERAAALAATLSAANLSTTDVSKGYIASSAKGYVNSLLYQLLLDLENHRD NRVDENIDRIIQIGHSSGKDMSFGMLLALQSVELDEK >gi|307679199|gb|GL457048.1| GENE 63 62066 - 63319 1522 417 aa, chain + ## HITS:1 COG:STM0520 KEGG:ns NR:ns ## COG: STM0520 COG0477 # Protein_GI_number: 16763900 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 16 405 11 399 415 219 34.0 9e-57 MENSKKNQAVQVSNSYWIKVVAIFFVGWILMYATRTIFNPVMGVIGEQFGLSNTQLGLAN SIFFLTYAVAQIPFGMIGDKIGRKLVIAVGFIVLAISTYFSGLATTFVMFLVIRAIAGIG QGAYYGPQYALSTEAIPASKRTIGNAIINSGMAFGTSGGYLLSSKLVLENGEHWSKPFFI MAIPTFIVGILFYTILKEKVIRPGEEAARAAAEEGPQEKISLKEIFSNRNLLAAFILCFT SIYANFVIITWLPQFLIAERGFTGASVGFISSLVPWASIPGALIFARLNDKTGATKKLVF TLVPLAILSVFAIAFVTNRTLLISVLILYGLTGKLALDPIMVTFVTKHAPKAALGTTLSA YNFIGMSGSILAPYVTGYLADTAGSMQVGFYLSCVLLVIGLLAFAFLAKDESKPKLG >gi|307679199|gb|GL457048.1| GENE 64 63454 - 64392 1244 312 aa, chain + ## HITS:1 COG:L92850 KEGG:ns NR:ns ## COG: L92850 COG0549 # Protein_GI_number: 15674015 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Lactococcus lactis # 5 308 6 312 314 305 53.0 8e-83 MSLNVIALGGNAILDTDPTDEGQKAVVNHAAKYIAEFVAKGEQVIVCHGNGPQVGNLLLQ QKAGESEKNPALKLDTCVAMTQGSIGYWLQNALTNEFEKRNIAKPVISVVTQVRVDKEDP SFKKPSKPIGPFYTKEEADAEAAKDGSTYVEDAGRGYRKVVPSPMPKEIVEKEAVRALVE ADVLTICSGGGGIPVVAEDGQYVGVEAVNDKDFSARVLAENVDADRLIILTGVDNIYINY NQPDQKALEQISVAEAEEYIKEGHFAAGSMLPKIEAALDFVKGDDKRKAIITSIENLENI DKEAGTVISQKG >gi|307679199|gb|GL457048.1| GENE 65 64399 - 65619 940 406 aa, chain + ## HITS:1 COG:RC0223 KEGG:ns NR:ns ## COG: RC0223 COG1301 # Protein_GI_number: 15892146 # Func_class: C Energy production and conversion # Function: Na+/H+-dicarboxylate symporters # Organism: Rickettsia conorii # 9 403 6 399 399 187 29.0 3e-47 MKKPSMITQIAIAVVVGILVGLLIPASGNYLKIVGDVFLRLMQMAIPILILGQIVQAVGS INPKELTSLGGRTIAVFGISSLAAALWGVLMAVIFNPGYGVKMTGFQDASIKAQEISITD TILNFVPKNIFDSLTQGSIIQIIVFALFFGLALNKYLQSHPETQLFQIIVDFNEVIITVI RYVMYLAPLGIFALIASTISHLGLQIILPLVKYLLVYGLGTILFLGIWILVITLYCKVSP LRLITNMKNMSVMALATTSSAITLPVALEETEAKLGLSKRITNLVLPLGMSLNSNGSAMH MAFTVMTIAQMYQLEFDITKMIYLAITATFVSLANAVVPGAGLVSLAVIVPQMGLPIESI AIFAGVEWFVGMLRTILNVNSDVYSAILVAKSVDEIDYTVFNSSNK >gi|307679199|gb|GL457048.1| GENE 66 65709 - 66770 1247 353 aa, chain + ## HITS:1 COG:ylbC KEGG:ns NR:ns ## COG: ylbC COG2055 # Protein_GI_number: 16128501 # Func_class: C Energy production and conversion # Function: Malate/L-lactate dehydrogenases # Organism: Escherichia coli K12 # 7 353 3 349 349 404 55.0 1e-112 MEEMVVVTPEKLEKLMKQKLEAAGLHSEHAEEVARHLTFADASGIHSHGAVRMDYYAERI AKGGITIDPELSFEKTGPSTAIFHGDNGVGQFVCNEALAAAVDLAKESGLAYVGVSQTSH SGTLSYYVKKAAEQGMVALSMCQSDPMVVPFGGTSNYFGTNPIAFAAPRAGHEPVVFDMA TTVQAWGKILDARSRDVEIPDTWAVDEKGQPTTDPYEVRGLLPISGPKGYGLMMMVDVLA GSLLGLPFGKHVSSMYADLTEKRNLGQMFLVIDPSRFTDSERFKENINQMVEELHSVPTA EGFQQVYYPGEIGQLNYQKAMSEGIEIPQSIYDYLVSEIVHYDKYGGQGAFAK >gi|307679199|gb|GL457048.1| GENE 67 66836 - 68191 1645 451 aa, chain + ## HITS:1 COG:no KEGG:EF0389 NR:ns ## KEGG: EF0389 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 451 1 451 451 662 99.0 0 MKKSSKVALIFAFLVSIFVPVAVFADEIGDVVAPTGIMALVVIIPLIVVLVLLFMKVDMI IAGLIGGVLAMLIGGIGLEEANKQMLEAIPMMLGITVPIINSAVAMAVFKAGSYSAALTL AKRGTKGKVEYVSAFIVILLAAATYMSGIGGGSAMVIAPLAFAAVGVVPELIAAMSLAAA VSFTTSPASLESSIVSKLGDISVGSYVSTMRPYWLFFVALAIVLAFWGTKHRNVGFKESA DDEFDKKSNGELFKITLPAIFLLFAVIFGPIVNDLIGFAFFTPLVYMILTLVLIFLCTDF SMNKSVEAMVDGSTYILTRLFQVGIFLAFINVIAQTGTFAVIAGVAENAPAFIVVPVAIL TGILIGIPAGAYVGSVLTLVLPVAVSLNFPPLALGFVAMGVGLGSQMSFVNITMQALSSG FQIPILDVVKGNVKWLSIASVLLLVIGLIFG >gi|307679199|gb|GL457048.1| GENE 68 68216 - 69439 1810 407 aa, chain + ## HITS:1 COG:SMa2371 KEGG:ns NR:ns ## COG: SMa2371 COG0402 # Protein_GI_number: 16263735 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Sinorhizobium meliloti # 2 403 3 407 432 241 34.0 2e-63 MDLLIKQVRLQDGEALQDVAIKEGKIIEIAPVITGDAKEVIEADGRVLIPGFVESHLHLD KALIADRKPNKSGTLKEAIEVTAELKPTFTEEDIYDRAKRALEMLIVHGTTALRTHAEFD PAQGFTGFKTIMRLKEEYKELIDMQVVAFPQEGIFKAPGTEQMMYEAMDMGADVVGGIPY NDAPAKEHIDLVFEIAKKYDKDVDLHQDFADEADDMSIEYLCEKTIAEGYQGRVSVGHLT ALHALPEAELAPIIAKMAEANISVMALPATDLHLGARGDQYNVRRAVTPIRKLRDGGVNV CIATNNIRNAFTPYGTGDIVQTAMLAIPVGHLGGADDLKTVLPMVTTSPARAMGLEGYGV AVGNKADLVLLDTKVVEHAIIDIPERLYVIKNGRVTVKTDKKVEIIR >gi|307679199|gb|GL457048.1| GENE 69 69887 - 72181 1678 764 aa, chain + ## HITS:1 COG:no KEGG:EF0392 NR:ns ## KEGG: EF0392 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 764 1 764 764 1431 98.0 0 MKRSKWKELIVTGICHILVFPILIQTTVFAETLPSTKQVREGTNHSLTAEKAKSEQPQTK DKLHDEEPLALPKSELIDNEANVTSQTIRERIETPNLTYRYGFINEEGQPVNANEILLQY HSWQGNSPNGINVWEGESQPVTASTVANLKEVVIPSEKVAVYSDMSTVLAASNQTFFLPR YYTSLSLYNKKGEIDPNFPLPTISDASGNQYPTTISQFELEKMSAQQYSQKTGVTFNISE SQKLIVPLYNQVKVDSSNQSGLLNYFKFSGPVYYHVTNRIVTEHFVDTQGKPIPPPPGFR QGKQTLIERDPYAFKQKDLLPSSYEIDSKTYQFQGWYKGKTKPENLEKSVTPSYDITYDD NDDLTVVYKEIPQKNYTFEDVNGVEIAPPSDFIQDHQQPITTDGFRYLAGKKLPQQYSVN GKTYLYQGWYQDKTKQESLEKTKRPINSPVFNEMNAITAVYKEITAKAEMQIEGLVKVMP SGYIQIWQIMLTNVGEVPLKKINLKPASGWSPGLARPIQVTIRVGSEPNKIVPITDENWR VGIALNTEVPIGQTATIMMTTIATGEPDQVLQAAVEMNGNFSAVHAADTVRIQPKNQEIV APDEEGFISTPTFDFGKVAISSNTQQHGLKQAADYYENGQENPYLRLKKSQPNWALTAEL SPFEGRVDQLSSMTKLLLGTTNVSGFIQYNQPTETKVALGKTTAIQLVANGVASHIVDNG QFDESDVYQFDFSFDQIKLEIPANQGRKDQTYQAMVTWNLVTGP >gi|307679199|gb|GL457048.1| GENE 70 72638 - 73993 1673 451 aa, chain + ## HITS:1 COG:SP2216_1 KEGG:ns NR:ns ## COG: SP2216_1 COG3883 # Protein_GI_number: 15902020 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 268 1 269 270 104 37.0 4e-22 MKKRLFASVLLCSLTLSAIATPSIALADNVDKKIEEKNQEISSLKAKQGDLASQVSSLEA EVSSVFDESMALREQKQTLKAKSEQLQQEITNLNQRIEKRNEAIKNQARDVQVNGQSTTM LDAVLDADSVADAISRVQAVSTIVSANNDLMKQKKEDKQAVVDKKAENEKKVKQLEATEA ELETKRQDLLSKQSELNVMKASLALEQSSAESSKAGLEKQKAAAEAEQARLAAEQKAAAE KAKQAAAKPAKAEVKAEAPVASSSTTEAQAPASSSSATESSTQQTTETTTPSTDNSATEN TGSSSSEQPVQPTTPSDNGNNGGQTGGGTVTPTPTPEPTPAPSADPTINALNVLRQSLGL RPVVWDAGLAASATARAAQVEAGGIPNDHWSRGDEVIAIMWAPGNSVIMAWYNETNMVTA SGSGHRDWEINPGITRVGFGYSGSTIVGHSA >gi|307679199|gb|GL457048.1| GENE 71 74401 - 75528 1491 375 aa, chain + ## HITS:1 COG:lin0838 KEGG:ns NR:ns ## COG: lin0838 COG0620 # Protein_GI_number: 16799912 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase II (cobalamin-independent) # Organism: Listeria innocua # 1 375 1 365 367 364 49.0 1e-100 MSSQIPFTVDHVGSFLRPETIKKARKKVQAGALSQAELRLIEDEEIKALVAKQKAGGLRG ITDGEFRRGFWHIDFLEGLNGVTGYIPETGYNQTFHGKAAPAYNIRVVDKISFPTQHPFL EDFSFLKEVVEVGDGTVAKATIPSPTMILRQEILSNDGTSRIQTIYPEIGAFYKDLAQTY KDAIAAFYERGCRYLQFDDTNWAFLADQTKQEELRAKGIQPEEIAQVCTTIINEALAGKP EDLTVTTHICRGNHASSWLFSGGYEPIAKELFATNYDGFFLEYDSDRAGDFSPLRHWQNN GSKVVLGLVTSKFPELEETEQVKARIEEAQQFIPLENLSISPQCGFASTEEGNRLTEKEQ WRKVQLLQEIAREVW >gi|307679199|gb|GL457048.1| GENE 72 75579 - 76763 1135 394 aa, chain - ## HITS:1 COG:SA1192 KEGG:ns NR:ns ## COG: SA1192 COG0628 # Protein_GI_number: 15926939 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Staphylococcus aureus N315 # 6 383 18 393 402 265 35.0 1e-70 MDKESTKWIRFLGGKNLLYTLTILCLIAVTIFLFNTVSFIFKPIFVIFSAVLGPVLFGII LFYLLNPMVKRLEKKIPRVWAIAILYVLIIALLVLAGLQLFPIIQDQTEELIKQFPSFWK STLQTVQEFMAKTPFAKDLESANESINQLWGKLANSFKDFAGDYLQTGAQGLGSVFSAVS STFLTLFTGPIIAFFLLKDKEKFYRFVKGIIPPAFRPDFDEYSQIANIQIGDYLKGQVIA SLVLGIMYWPAFLLIGLQFGSILALAAGILCIIPYIGPFIAFIPGLIIAFQDSTFMVVKF VIVWFAIQLIHGDFVIPRVMGDKLKVHPITILLVLLVMGELFGLMGVIFGIPMYCLVKVT VIYLFRKFKQRYNRFYGDNGEYEHTNFTKDQYLK >gi|307679199|gb|GL457048.1| GENE 73 76779 - 77294 571 171 aa, chain - ## HITS:1 COG:no KEGG:EF0397 NR:ns ## KEGG: EF0397 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 171 1 171 171 248 100.0 6e-65 MFQTFRENFRRHTLLRDAVFIVIGSAIVFNPGAFFQFVGYLIAGYLMLLGLINIYDDYKI KKQTGSWGLGFVTGLIFVVLAVAFLFFAPVIVSILPFLLGISIVINGLVQLTFALNTRQT GALIYSILVLIAGAVLVFNPFKSLLVLMQVFGFILIFMGVIEIIGHFRNKA >gi|307679199|gb|GL457048.1| GENE 74 77371 - 77472 85 33 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLETVSLEKITLKIKKVLQMSENWHIMESEILF >gi|307679199|gb|GL457048.1| GENE 75 77487 - 78173 767 228 aa, chain + ## HITS:1 COG:SP0858 KEGG:ns NR:ns ## COG: SP0858 COG3819 # Protein_GI_number: 15900742 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 1 220 1 221 229 128 38.0 8e-30 MDLLPLLGVLIVIVGFALKFDAILIVMVALIVTAFTGGLGLTSMLETLGTTFVNNRGMAI FIIIMLATGTLERNGLKESAATLIKRFKKVSAGVIIDIYGVFRIIFAAFNVSFGGVAGFV RPIILPMALGTIESKNLPMVPEYEEELKGMASAMENICWFFGQVLFVGGAGALLVQSTLK DLGYEVTLGKLALVEVPVALVALISASIYFTLKEKRLRKKYYGQEGLK >gi|307679199|gb|GL457048.1| GENE 76 78170 - 79114 1083 314 aa, chain + ## HITS:1 COG:SPy0507 KEGG:ns NR:ns ## COG: SPy0507 COG3817 # Protein_GI_number: 15674612 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 15 313 8 305 308 207 41.0 2e-53 MSFFTDPSIDLSAKLLEVLYIFMGIILLYTSFRSFRDKTNQHAYGTSLFWGILGILIGFG RFIPPVACGVLIFVMTIPAILQKVTKGESRLPSKEYMEKMSQKLGMKIFIPALSIGVFAI LFATLTTLGALVGVGVGVFVAIFIMMFFSKNNTPKVFFDDAAEMLETVGPLSTLPMLLAC LGAVFTSAGVGEIISKGVSAVVPAGNVNVGIIIYAVGMVIFTAIMGNAFAAITVMTVGIG VPFVFSLGADPALVGMVALTCGFCGTLLTPMAANFNIVPVAMLEMKDKYGVIKNQLPIAL FMLIFQIVYMILFK >gi|307679199|gb|GL457048.1| GENE 77 79130 - 79771 854 213 aa, chain + ## HITS:1 COG:SP0860 KEGG:ns NR:ns ## COG: SP0860 COG2039 # Protein_GI_number: 15900744 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) # Organism: Streptococcus pneumoniae TIGR4 # 1 213 1 214 214 237 55.0 1e-62 MKVVVTGFDPFGGEAINPAFEAVKKLPAEIAGAEIIKVEVPTVFGTSGEKVAEAIETHQP DMVICVGQAGGRQTVTVEKVAINLAEARIPDNAGQQPSDVPLVEDGATAYFTNLPIKAMV KNCHDHQLPAAISYTAGTFVCNDIMYHLLHLINTKYPTIRGGFIHVPFLPEQTIDKPTFA SMSLEAITDSLFYMIEAAVKTQEDIQLQGGTTH >gi|307679199|gb|GL457048.1| GENE 78 79838 - 79927 73 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MACEKIFYTIFVDKSVSSWYIEIHKLLAQ >gi|307679199|gb|GL457048.1| GENE 79 80215 - 81618 1765 467 aa, chain + ## HITS:1 COG:NMA0715 KEGG:ns NR:ns ## COG: NMA0715 COG1757 # Protein_GI_number: 15793692 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Neisseria meningitidis Z2491 # 14 458 14 458 459 288 36.0 1e-77 MKEKQKKKTVSVREASIVLLIIVAAIATGVIGLKISPNITILFVIALILGYAMFRKVPFD QMHKGIVDGLKPGIIPIFIFILVGALIAVWIQAGIIPTIMVFGFKMISVKWFVPSVFIVC AIVGSAVGSAFTVMSTIGIAFFGIGSTLGLNPALVVGAIVSGSVFGDKMSPLSESTNLAA AIVEADLFKHIKNLMWSTVPAFIVSLILFMILGQTYANTSLTEVVQVIQVLEDHFTISIW SLLPLALMLICAWRKIPAIITILLNIIVAVIMIIIQNPKVSLQALGNTLENGFVSQTGNA QIDQLLSRGGIMSMMPTVALIILTLSLGGLLMELGLISAVMEVVSQKMSSTPKLILSTLL TGIGVNIFIGEQFLSVILPGNAFKEVYKKEGLDPTVLGRTLEDGGTVINYLIPWGIAGSF VAGTFGVPTLTYLPFVFFSLLSPVFSMVSAFTGLGIKRLSAEPVTEK >gi|307679199|gb|GL457048.1| GENE 80 81770 - 82204 564 144 aa, chain + ## HITS:1 COG:L102062_1 KEGG:ns NR:ns ## COG: L102062_1 COG1846 # Protein_GI_number: 15673454 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 3 109 1 107 160 100 55.0 6e-22 MSLSLREVSQLLCQLKVLDQKITKVFEEQVGLSLTRYELLMILKERQPCLQTEIQEHLKI DSGAVTRHLKILEEKQYVTRQRNPENNREVLVHLTEKAQQELQQCTAKQQTVTEIIPSTF TKDDCRQLKELLTKLDQSITTKEV >gi|307679199|gb|GL457048.1| GENE 81 82209 - 82844 913 211 aa, chain + ## HITS:1 COG:L102062_2 KEGG:ns NR:ns ## COG: L102062_2 COG0778 # Protein_GI_number: 15673454 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Lactococcus lactis # 16 211 1 196 196 289 73.0 2e-78 MTTYTTNDFSEIVFGRKSVRVYDETHKISHEEMLTMIQEATTAPSSVNMQPWRFVVVESE AGKEKLKPLIRFNTRQNETSSAMLLIFGDLNCHERGEEIYNQAYASGKMPKEVRDQQLAA IIPHYESLSREQMNDIVKIDASLAAMQFMLVARAHGYETNPIGGFEAEKLAETFGLDQER YVPVMILSVGKGMETGYESVRLAPEKITTFE >gi|307679199|gb|GL457048.1| GENE 82 82887 - 83720 675 277 aa, chain - ## HITS:1 COG:lin2847 KEGG:ns NR:ns ## COG: lin2847 COG0561 # Protein_GI_number: 16801907 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 1 277 1 277 279 301 54.0 8e-82 MAIKTIVMDIDGTLLTSEKKISPKTRQALVAAQKQGLSLILASGRPTNGMRPLADELEMA HYNGHLLSYNGACVTHHGSQQQLFNQTISKSLSQQILEHLKQFDVIPMINDETFMYVNDV FHNTLHLETGDFNIIEYESRGGNFQLCEWHDLAARLNFPLNKILIAGEPAYLQKYHEAIY APFKETVTAAFSAPFYFEFTAKNIDKARSLEKLTLQLGITAEEVIAFGDGHNDYTMLEWA GTGIAMENAVDELKSIATEVTLSNDNDGIAVALANFL >gi|307679199|gb|GL457048.1| GENE 83 83904 - 85652 1488 582 aa, chain + ## HITS:1 COG:SP0394 KEGG:ns NR:ns ## COG: SP0394 COG2213 # Protein_GI_number: 15900314 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannitol-specific IIBC component # Organism: Streptococcus pneumoniae TIGR4 # 22 572 11 582 589 375 39.0 1e-103 MKEKEMHSLFFKHKFVKVTPYLRRFGHRLSGMIMPNLSIFIAWSLLSLVAGYTTGNLRLA LSEVETIMIRVVLPILIGFTGGKMFEEQRGGVVAAIATVGVIVSTDVPQLFGAMFIGPLA GYTFAKIEQILLPKVKEGYEMLTKNFLAGIVGGLLCCFGILVVAPAVESASFWLYQFSSW LIEANLLPLVHVFLEPLKVLFFNNAINHGLLTPLGLEGASQTGQSILFLLETNPGPGVGV LVAFLLFGPVGQRKTAGGATMIQLIGGIHEIYFPFVLMDPRLFLAVIAGGMSGTLVFQIF NVGLSAPASPGSLVAILANAPTDARLAVFSGIFVSFLCSFAIASLLLKRQRGIEPVSMIK MKEKEEDQVETVTPNYQQILFVCDAGMGSSAMGASLLSRQLKAVDLEIPVTYQSVHQMKW QPKTLVVIQAELKQLAQKYVPEKDMVSVQNFLEIKSYYPQVLAKLTASSQEQSSLGSEST GTNPTKQIQKLVFLYAKNVRGSQTMGMELLRQQAAKQGVAIEVSKEPLETVFFTKETTYV VTRELAQAYHLDLTQQNLYVVTSFLNKKEYQEWLEGGADRCF >gi|307679199|gb|GL457048.1| GENE 84 85643 - 87676 1863 677 aa, chain + ## HITS:1 COG:BS_ydaA KEGG:ns NR:ns ## COG: BS_ydaA COG3711 # Protein_GI_number: 16077483 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus subtilis # 1 676 1 689 694 234 27.0 4e-61 MFLTTRETVLLTELVNSPTPVSVNRMMNLLKVSRRTVYRELENLETSLASMGATLEKVAR GRFSIQADEAAMTEIQAAILGEETQELSTLARQHAILLTLLQTKEPVSMHYFLETYCISN TTFYADIKQLETRIARIPLTISRNQGYEVTGSEKYRRLLMANILSMEINEYQFFHFTELT TNDHFFFQFIHAEHLAFAQKIVQPEVETLFPALSDRKLQHLILMLTIAMDRVTAGFYLAD ETYTGQMNKAFLNCSKRLFSKVAAETKQLYAVSEIVFFASLLSDFSNSFDEDFFDEHFDT QLAYAVKQLIEAVSQETEVNFFEDTNLYKMLLTHLSGVFSRAVLQEEDLTNPILERIMNQ YQEIAAALRQALPQIFPQKNLSEEEIAYMVLHFANSLERSPKIMEVDIAGFSPSGLASTS MLEMRLRRYFPFINQIHFFRIADLGKVNVEENYDLVISTSLLPGYNGKYKLISPLLLDDE IRQLKEEFKRISHEKRSLRKAPVKKIGGEESYETVVAFMEEISKLLETFFIADLNNQADL AETVQQALAQLSADLITDSAIVCQQLMKRYEQAPIGIPQTEMALFHTSSTAVTQPVFCIF NLAQPLMIEGMDKKPMQLQRMLLMLAPMPIDETIGKILGKISGAIIMNDLNTEIFHSGNE AIVYQLLSSLLIEEMKG >gi|307679199|gb|GL457048.1| GENE 85 87687 - 88121 474 144 aa, chain + ## HITS:1 COG:L32907 KEGG:ns NR:ns ## COG: L32907 COG4668 # Protein_GI_number: 15672005 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol/fructose-specific phosphotransferase system, IIA domain # Organism: Lactococcus lactis # 3 139 2 139 143 125 44.0 2e-29 MFEITAEQIMLNQSYASWEEALAASGELLLKNQLVTPDYVKAMYQRQQKVSVYIGNFVAL PHAEGQDEQVLKEGICFIQVPDGVNFGTEADRKIATLLFVVALKSQRQLSMLQELAFFCS DLENIQRLSDCQTIDEAQKILAQA >gi|307679199|gb|GL457048.1| GENE 86 88379 - 88474 170 31 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYEIVTKVLVPIFVGIVLKLVTIWLEKQNEE >gi|307679199|gb|GL457048.1| GENE 87 88720 - 90492 2287 590 aa, chain + ## HITS:1 COG:SP0394 KEGG:ns NR:ns ## COG: SP0394 COG2213 # Protein_GI_number: 15900314 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannitol-specific IIBC component # Organism: Streptococcus pneumoniae TIGR4 # 7 584 2 585 589 605 58.0 1e-173 MEQVPEKNKVSIKAKVQRLGSTLSSMVMPNIGALIAWGVLTALFIPDGYLPNKAFATMVG PMLTYLIPLLIGYTGGKVIAGDRGAVVGAIATMGVIVGTDIPMMLGAMIMGPLGGFTIKK FDQYFQHRIKAGFEMLVNNFSAGLIGFALALLGFSAIGPIVDALTAAMARGVEIILNAHL IPLTSIFIEPAKVLFLNNAINHGILTPLGTEQVLSAGKSILFLLEANPGPGLGVLLAFMF FGKGAAKSSAPGAIIIHFLGGIHEIYFPYVMMKPLLFLSVIAGGATGSLVFQTLDAGLRA PASPGSIIAILAMTPMGSYLPVILGVLAATAVSFAVSAVILKADAKEESDEFAQKVKETQ AAKAASKGLTVTNGSASLSGIQQIIFACDAGMGSSAMGASILRKKVQEAGLVQTVTNRAI NNLTDEGNTLIVTQAELQERAKQKAPNATFVAVENFLNSPRYDEIVAELSGTKEKNDAQP TVSKATPASEIEGDLANVNEILLVHDDRVGSATMGMKVLEEILDKEKISMPIRKININEL TQQTQALIVTKAELTEQARKKAPKATHLSVKSMVNPQKYETVVSLLKESA >gi|307679199|gb|GL457048.1| GENE 88 90507 - 90944 573 145 aa, chain + ## HITS:1 COG:L32907 KEGG:ns NR:ns ## COG: L32907 COG4668 # Protein_GI_number: 15672005 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol/fructose-specific phosphotransferase system, IIA domain # Organism: Lactococcus lactis # 9 140 8 139 143 174 65.0 6e-44 MENLTNISIELNQQFNTKEEAIRFCGEKLVEAGCVEPAYIEAMIERDQLLSVYMGNFIAI PHGTEEAKKLVKKSGICVVQVPEGVNFGTEEDEKIATVLFGIAGVGEEHLQLVQQIALYC SDMDNVVQLADALSKEEITENLAIA >gi|307679199|gb|GL457048.1| GENE 89 90959 - 92113 1551 384 aa, chain + ## HITS:1 COG:L33416 KEGG:ns NR:ns ## COG: L33416 COG0246 # Protein_GI_number: 15672006 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol-1-phosphate/altronate dehydrogenases # Organism: Lactococcus lactis # 3 380 4 385 385 417 57.0 1e-116 MNAVHFGAGNIGRGFIGEILAKNGFHITFVDVNETIIQALKERKSYTIELADASHQQINV ENVTGLNNMTEPEKVVEAIAEADLVTTAIGPNILPRIAELIAQGIDARAEANCQKPLDII ACENMIGGSTFLAEEVAKYLKNPAYAEQWIGFPDAAVDRIVPLQKHEDPLFVQVEPFCEW VIDDTNRKAKEIQLEGVHYVADLEPYIERKLFSVNTGHATVAYTGALLGYQTIDEAMQDA LVVAQLKSVLQETGKLLVAKWNFDEQEHAAYIEKIIQRFQNKYISDAITRVARTPIRKLG AQERFIRPIRELQERNLVSPHLLAMIGIVFNYHDPEDEQSRQLQEMLDQESVDTVIAEVT GIEDPETVKNIKQNVERYARPQVA Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:10:51 2011 Seq name: gi|307679198|gb|GL457049.1| Enterococcus faecalis TX2141 genomic scaffold Scfld194, whole genome shotgun sequence Length of sequence - 1537 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 743 916 ## EF0839 hypothetical protein 2 1 Op 2 . - CDS 747 - 1535 686 ## COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase] Predicted protein(s) >gi|307679198|gb|GL457049.1| GENE 1 2 - 743 916 247 aa, chain - ## HITS:1 COG:no KEGG:EF0839 NR:ns ## KEGG: EF0839 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 247 1 247 247 473 100.0 1e-132 MSLKPNYLEERICLNVLANSVENAQACYEAAEGHVVLGVLSKNYETDEAAIDDMKKYQAA TNNALSVGLGAGDPNQSQMVARLSEVLQPQHVNQVFTGVGASRALLRQDETVINGLVSPT GKVGYVNIATGPLSSGAPAAEVPIETAIKLLKDMGGSSIKYFPMKGLAHKEEYQAVAAAC AKYDFYLEPTGGIDLENFEEIVQIAVDAGVKKIIPHVYSSIIDQETGDTRTEDVKTLLTM MKNTLNK >gi|307679198|gb|GL457049.1| GENE 2 747 - 1535 686 262 aa, chain - ## HITS:1 COG:STM4446 KEGG:ns NR:ns ## COG: STM4446 COG1921 # Protein_GI_number: 16767692 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine synthase [seryl-tRNASer selenium transferase] # Organism: Salmonella typhimurium LT2 # 1 262 107 371 372 274 54.0 2e-73 LPKGHNVDYGTPVEVMVAQGGGQVVEAGYANMCSPEHVEMMISEKTAAILYIKSHHTVQK SMLTVAEAAKVAQRHKVPLIVDAAAEEDLFKYTEAGADLVIYSGAKAIEGPSAGLVVGKK EYIDWVRLQGKGIGRAMKIGKDNILGFTQAVEEYLAHGSESEASMQERLKPFVEAINNLS DLTAKIVQDGAGRDIYRASVKVDGRKTAKEVIQALKAESPAIYTREYQANNGIIEFDIRS VNQEEMNKIVQRLQEIMDTKEK Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:10:56 2011 Seq name: gi|307679197|gb|GL457050.1| Enterococcus faecalis TX2141 genomic scaffold Scfld201, whole genome shotgun sequence Length of sequence - 3419 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 37 - 96 7.0 1 1 Op 1 . + CDS 219 - 2261 885 ## COG3711 Transcriptional antiterminator 2 1 Op 2 . + CDS 2272 - 2889 620 ## COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase 3 1 Op 3 . + CDS 2936 - 3394 431 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Predicted protein(s) >gi|307679197|gb|GL457050.1| GENE 1 219 - 2261 885 680 aa, chain + ## HITS:1 COG:lin2817_1 KEGG:ns NR:ns ## COG: lin2817_1 COG3711 # Protein_GI_number: 16801878 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Listeria innocua # 1 523 3 525 536 218 27.0 3e-56 MNKRIREILKMIIKNPEMKLSALTSELDLTRRQINYAINQFNEDLEMKNIPTIQRSHSGD ITVPIEVIQMMSQLDQETVDEQATLALTEGERGALIVMTLITNIEYVSLDHLLDIVEVSK TTIMDDIKRTDALLRNYSLTIQYDRINGYQLAGSEHRILQLLSDLVKQCPIFRRETIRGK LVHGVTEEEIVHLVHNMEQMLHLSYSDEAVDYLQTAARFLVSRGIKVSTKPDFFPGEVSN TPEYRMLTILVGETAWNLSKSYLEWFTLLFLTSNIFESKTTQNYDSDQDLRKLISQMVEN FQNQTLIMIDDREDFERRILSHLRPACFRIRFNLSLGVYSVDSLIKDSNHAILIDLMKEL IIPIENWLNKAFPNDELDLLSYYFGYQLSSHNKLNKQRPRAVVVCTNGVMVSKLVRANME KLFPEIHFLASLSVRDFYKFEVDYDLVFTTTPLNSAMMQFIIDPIMTYQEQISLRYRVLS DLGITKVDRALDELLKIVKKYATVNDQASLREELQYFLVKQDESTPLDNFQVLPSLTHYL RPNYVQVIDQEMTWEEAVSLACQPLLDHQIIDSRFINDCVNQIKQPGYAGYLGMRTCIPH TTVDKGVINDGVSIMVCQKPVIFPNGEAISLILPLSFFDLTKHLRAINQIADIAKDDSLI DQLVASADEKTIYQLLRQSS >gi|307679197|gb|GL457050.1| GENE 2 2272 - 2889 620 205 aa, chain + ## HITS:1 COG:all4771 KEGG:ns NR:ns ## COG: all4771 COG0800 # Protein_GI_number: 17232263 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-6-phosphogluconate aldolase # Organism: Nostoc sp. PCC 7120 # 37 202 42 206 210 100 35.0 2e-21 MKLADYPRFTVIMRGYTFDQADAILQAMQEFDHQFAVEMTMNTEGAIDHIRELNKRYGDT TYIGAGTVRTLEQAKACYEAGAKFLLGPHMFTEEMLAYANEKGVLAVPAAMTPSEVNQMF AQGADIVKVFPAAVVTPRFFKDIQAPLGKLPLMGVGGISKENAKEFFENGASYLGLGSGM FNKQDIEELNVKNLAQSMKELLAAI >gi|307679197|gb|GL457050.1| GENE 3 2936 - 3394 431 152 aa, chain + ## HITS:1 COG:BH0192 KEGG:ns NR:ns ## COG: BH0192 COG1762 # Protein_GI_number: 15612755 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Bacillus halodurans # 2 147 3 148 160 94 31.0 1e-19 MELYLNEELVFRNVEASTDSEVLAYLAGELYQKGYVKEEYIQAIQDREKEYPTGLPSTPP GIAIPHANYEMVNKTTLAIATLKEPVLFHNMEDNKAQLPIQIVIMMAIGEPHGQVEMLQK IVGIIQDEPLRQEMIDARNDTELLALLKKAVF Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:10:57 2011 Seq name: gi|307679196|gb|GL457051.1| Enterococcus faecalis TX2141 genomic scaffold Scfld202, whole genome shotgun sequence Length of sequence - 640 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - TRNA 2 - 75 71.5 # Arg ACG 0 0 - TRNA 90 - 175 68.1 # Leu TAA 0 0 - TRNA 191 - 262 85.5 # Gly GCC 0 0 - TRNA 267 - 342 98.3 # Thr TGT 0 0 - TRNA 349 - 430 71.9 # Leu TAG 0 0 - TRNA 447 - 519 88.6 # Lys TTT 0 0 - TRNA 526 - 598 88.0 # Val TAC 0 0 - 5S_RRNA 538 - 594 92.0 # AF302131 [D:490..741] # 5S ribosomal RNA # Streptococcus agalactiae # Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus. Predicted protein(s) Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:11:19 2011 Seq name: gi|307679195|gb|GL457052.1| Enterococcus faecalis TX2141 genomic scaffold Scfld213, whole genome shotgun sequence Length of sequence - 73065 bp Number of predicted genes - 80, with homology - 75 Number of transcription units - 37, operones - 21 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 3/0.083 - CDS 82 - 1248 864 ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis 2 1 Op 2 . - CDS 1312 - 2499 900 ## COG1004 Predicted UDP-glucose 6-dehydrogenase 3 1 Op 3 . - CDS 2523 - 2591 65 ## - Prom 2651 - 2710 3.2 - Term 2760 - 2795 0.2 4 2 Tu 1 1/0.167 - CDS 2802 - 3182 311 ## COG3316 Transposase and inactivated derivatives - Prom 3218 - 3277 3.2 5 3 Tu 1 . - CDS 3297 - 3404 204 ## COG3316 Transposase and inactivated derivatives - Prom 3426 - 3485 7.3 6 4 Op 1 . - CDS 3524 - 3859 209 ## Lbuc_0635 filamentation induced by cAMP protein Fic 7 4 Op 2 . - CDS 3935 - 4234 338 ## NMC1958 hypothetical protein 8 4 Op 3 . - CDS 4283 - 4882 428 ## COG0582 Integrase - Prom 4908 - 4967 8.2 + Prom 5301 - 5360 6.5 9 5 Op 1 1/0.167 + CDS 5407 - 6345 854 ## COG1893 Ketopantoate reductase 10 5 Op 2 . + CDS 6371 - 7408 1031 ## COG3641 Predicted membrane protein, putative toxin regulator 11 5 Op 3 . + CDS 7433 - 7546 123 ## + Term 7548 - 7584 5.0 12 6 Tu 1 . - CDS 7713 - 8018 115 ## COG3328 Transposase and inactivated derivatives - Prom 8115 - 8174 4.3 13 7 Tu 1 . - CDS 8346 - 8600 157 ## COG3328 Transposase and inactivated derivatives - Prom 8707 - 8766 5.9 + Prom 8695 - 8754 9.9 14 8 Tu 1 . + CDS 8783 - 10090 857 ## COG3464 Transposase and inactivated derivatives - TRNA 10288 - 10360 81.5 # Lys CTT 0 0 + Prom 10212 - 10271 6.3 15 9 Op 1 . + CDS 10437 - 10667 234 ## EF0480 excisionase, putative 16 9 Op 2 . + CDS 10711 - 11880 896 ## COG0582 Integrase + Term 11937 - 11966 -0.2 - Term 11865 - 11924 6.1 17 10 Op 1 . - CDS 12157 - 12294 247 ## EF0477 hypothetical protein 18 10 Op 2 22/0.000 - CDS 12301 - 14451 2280 ## COG0370 Fe2+ transport system protein B 19 10 Op 3 . - CDS 14448 - 14921 552 ## COG1918 Fe2+ transport system protein A - Prom 15114 - 15173 5.8 + Prom 15181 - 15240 7.1 20 11 Op 1 11/0.000 + CDS 15435 - 15659 343 ## COG0695 Glutaredoxin and related proteins 21 11 Op 2 18/0.000 + CDS 15661 - 16038 266 ## COG1780 Protein involved in ribonucleotide reduction 22 11 Op 3 24/0.000 + CDS 16019 - 18178 2119 ## COG0209 Ribonucleotide reductase, alpha subunit + Term 18194 - 18230 3.3 + Prom 18213 - 18272 4.7 23 11 Op 4 . + CDS 18379 - 19344 1092 ## COG0208 Ribonucleotide reductase, beta subunit + Term 19351 - 19388 6.0 - Term 19331 - 19381 13.1 24 12 Op 1 8/0.000 - CDS 19384 - 20670 1109 ## COG1512 Beta-propeller domains of methanol dehydrogenase type 25 12 Op 2 . - CDS 20715 - 21284 768 ## COG1704 Uncharacterized conserved protein - Prom 21313 - 21372 5.6 - Term 21377 - 21416 5.1 26 13 Op 1 . - CDS 21443 - 22144 1035 ## COG1285 Uncharacterized membrane protein - Prom 22166 - 22225 7.0 - Term 22171 - 22231 20.1 27 13 Op 2 . - CDS 22240 - 22941 1081 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase - Prom 22973 - 23032 9.1 - Term 23008 - 23054 10.8 28 14 Op 1 . - CDS 23071 - 24279 1537 ## COG1316 Transcriptional regulator - Prom 24358 - 24417 5.6 29 14 Op 2 . - CDS 24429 - 25409 996 ## COG0253 Diaminopimelate epimerase - Prom 25520 - 25579 10.9 - Term 25498 - 25533 5.3 30 15 Tu 1 . - CDS 25597 - 26205 761 ## PROTEIN SUPPORTED gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent - Prom 26253 - 26312 5.8 + Prom 26188 - 26247 7.4 31 16 Tu 1 . + CDS 26399 - 27208 944 ## EF0462 hypothetical protein + Term 27213 - 27247 4.5 32 17 Op 1 . - CDS 27205 - 27660 502 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 33 17 Op 2 . - CDS 27670 - 28659 858 ## COG1680 Beta-lactamase class C and other penicillin binding proteins 34 17 Op 3 2/0.083 - CDS 28672 - 29562 1069 ## COG2103 Predicted sugar phosphate isomerase 35 17 Op 4 . - CDS 29577 - 30428 621 ## COG1737 Transcriptional regulators 36 17 Op 5 1/0.167 - CDS 30445 - 30921 671 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 37 17 Op 6 13/0.000 - CDS 30952 - 31770 1013 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 38 17 Op 7 . - CDS 31763 - 32566 1002 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC - Prom 32603 - 32662 6.9 + Prom 32562 - 32621 9.1 39 18 Tu 1 . + CDS 32727 - 33506 543 ## COG0730 Predicted permeases 40 19 Tu 1 . - CDS 33543 - 33944 561 ## COG1764 Predicted redox protein, regulator of disulfide bond formation - Prom 33999 - 34058 8.2 + Prom 34054 - 34113 6.3 41 20 Tu 1 . + CDS 34165 - 35691 1566 ## COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases + Term 35807 - 35851 9.0 + Prom 35857 - 35916 7.2 42 21 Tu 1 . + CDS 35943 - 36641 688 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase + Term 36646 - 36698 13.1 - Term 36625 - 36696 9.4 43 22 Op 1 3/0.083 - CDS 36698 - 37801 1049 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 44 22 Op 2 15/0.000 - CDS 37802 - 38626 852 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 45 22 Op 3 10/0.000 - CDS 38614 - 40347 1698 ## COG1165 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 46 22 Op 4 . - CDS 40347 - 41714 1521 ## COG1169 Isochorismate synthase 47 22 Op 5 2/0.083 - CDS 41711 - 43168 1235 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 48 22 Op 6 . - CDS 43173 - 43988 1086 ## COG0447 Dihydroxynaphthoic acid synthase - Prom 44057 - 44116 7.0 + Prom 44061 - 44120 11.4 49 23 Tu 1 . + CDS 44243 - 44533 184 ## COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism - Term 44505 - 44557 6.0 50 24 Tu 1 . - CDS 44603 - 45202 895 ## EF0443 LysM domain-containing protein - Prom 45394 - 45453 7.0 + Prom 45583 - 45642 12.2 51 25 Tu 1 . + CDS 45709 - 45819 74 ## + Prom 45825 - 45884 3.1 52 26 Op 1 . + CDS 45954 - 46028 90 ## 53 26 Op 2 . + CDS 46021 - 47502 1501 ## COG3104 Dipeptide/tripeptide permease + Term 47515 - 47554 5.2 + Prom 47511 - 47570 5.5 54 27 Tu 1 . + CDS 47609 - 47809 336 ## EF0439 immunity protein PlnM, putative + Term 47810 - 47845 -0.5 - Term 47833 - 47877 6.8 55 28 Op 1 . - CDS 47892 - 48728 847 ## COG1082 Sugar phosphate isomerases/epimerases 56 28 Op 2 . - CDS 48730 - 49650 871 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 49683 - 49742 3.9 57 29 Op 1 4/0.083 - CDS 49860 - 50150 258 ## COG3254 Uncharacterized conserved protein 58 29 Op 2 5/0.000 - CDS 50168 - 51016 1061 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases 59 29 Op 3 6/0.000 - CDS 51044 - 52330 1352 ## COG4806 L-rhamnose isomerase 60 29 Op 4 . - CDS 52327 - 53829 1554 ## COG1070 Sugar (pentulose and hexulose) kinases - Prom 53854 - 53913 9.5 + Prom 53798 - 53857 8.5 61 30 Tu 1 . + CDS 53959 - 54831 725 ## COG2207 AraC-type DNA-binding domain-containing proteins + Term 54836 - 54880 10.1 - Term 54824 - 54866 10.5 62 31 Op 1 11/0.000 - CDS 54979 - 56274 1086 ## PROTEIN SUPPORTED gi|90020581|ref|YP_526408.1| ribosomal protein L16 63 31 Op 2 11/0.000 - CDS 56310 - 56786 256 ## PROTEIN SUPPORTED gi|90020580|ref|YP_526407.1| ribosomal protein S3 64 31 Op 3 . - CDS 56801 - 57811 586 ## PROTEIN SUPPORTED gi|90020579|ref|YP_526406.1| ribosomal protein L22 65 31 Op 4 1/0.167 - CDS 57829 - 58935 1275 ## COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins - Prom 58988 - 59047 4.4 - Term 59102 - 59160 17.1 66 32 Op 1 9/0.000 - CDS 59165 - 59953 204 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 67 32 Op 2 . - CDS 59975 - 60814 1079 ## COG3717 5-keto 4-deoxyuronate isomerase 68 32 Op 3 8/0.000 - CDS 60827 - 61834 1073 ## COG0524 Sugar kinases, ribokinase family 69 32 Op 4 1/0.167 - CDS 61839 - 62486 938 ## COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase - Prom 62539 - 62598 17.0 - Term 62579 - 62644 18.7 70 33 Op 1 . - CDS 62647 - 63399 988 ## COG1414 Transcriptional regulator - Prom 63419 - 63478 7.0 71 33 Op 2 . - CDS 63530 - 63997 525 ## EF0421 MerR family transcriptional regulator - Prom 64066 - 64125 8.9 + Prom 64039 - 64098 6.5 72 34 Op 1 . + CDS 64140 - 65615 1831 ## COG0477 Permeases of the major facilitator superfamily 73 34 Op 2 . + CDS 65615 - 66319 760 ## EF0419 hypothetical protein + Term 66325 - 66367 7.2 - Term 66310 - 66357 6.2 74 35 Op 1 . - CDS 66362 - 67483 761 ## Sez_1592 hypothetical protein 75 35 Op 2 . - CDS 67553 - 67627 62 ## - Prom 67674 - 67733 3.3 - Term 67635 - 67689 11.0 76 36 Op 1 36/0.000 - CDS 67761 - 68990 275 ## PROTEIN SUPPORTED gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 77 36 Op 2 24/0.000 - CDS 68987 - 69694 262 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 78 36 Op 3 . - CDS 69707 - 70861 1380 ## COG0845 Membrane-fusion protein - Prom 71109 - 71168 10.1 + Prom 70990 - 71049 8.8 79 37 Op 1 . + CDS 71206 - 71844 482 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases + Term 71860 - 71892 1.1 80 37 Op 2 . + CDS 71923 - 73038 1032 ## COG0665 Glycine/D-amino acid oxidases (deaminating) Predicted protein(s) >gi|307679195|gb|GL457052.1| GENE 1 82 - 1248 864 388 aa, chain - ## HITS:1 COG:mlr6163 KEGG:ns NR:ns ## COG: mlr6163 COG1215 # Protein_GI_number: 13475150 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Mesorhizobium loti # 40 388 50 395 424 238 34.0 1e-62 MVYGVLAISHIVFQIILCHSDHRRQNKKSFKDFHSNYQASVSVIVPAYNEVPQILKNCID SIVAQKIPDIEIIVVDDGSKNREELIEKVYDTYQSNQNVKILLPEENKGKRHCQKLGFDI AKGDIIVTVDSDTLLHDEDAVEKLIQRFANKKVGAVTGDVRVENKNKNILTRLITYRYWS AFHQERAAQSRFHVVMCCSGPFSAYRKEIIEEIKEKYITQYFLGENCTYGDDRHLTNLVL EAGYEVAFQSDSQVYTFVPETIGGYIKQQVRWNKSFYREMLWTIKFAHKHHFYMMYDLVM QFILPFMLVVSLIAMIEQTILYQNFGHLYQYLIVLVLIAIFRSLYGIYRTKDIGFLLFVI YGFMHVLLLLPVRFYALLTLKSTKWGTR >gi|307679195|gb|GL457052.1| GENE 2 1312 - 2499 900 395 aa, chain - ## HITS:1 COG:STM2080 KEGG:ns NR:ns ## COG: STM2080 COG1004 # Protein_GI_number: 16765410 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted UDP-glucose 6-dehydrogenase # Organism: Salmonella typhimurium LT2 # 8 395 2 388 388 440 55.0 1e-123 MGINGKKRISVFGLGYVGLANSLLLGQHEDVVGYDIDSHKITLLEQGCSPLIDDYIESFI KEKRSNVSYTSDFEQAVLHGEYLVIATPTDYDESTDYFNTSSIEEVIEKAIQIKADAKFI IKSTIPIGYVATLKKQFPSVQTIIFCPEFLREGTALYDNLYPSRIIIGDTTDAAKEIGAL FLRNVWDKEVPVLYTSENEAEAIKLFANTYLALRVAYFNELDTFAQINGLESRQIIEGMG LDARIGSHYNNPSFGYGGYCLPKDTKQLKQNYRQVPERLISAIVASNDVRKDFVADKIMA KNPKTVGIYRLTMKHGSDNFRYSAIQDVMTRLQSKGVEIVIYEPTLSVPNFKGIQLVHSL EDFKQAAEIIVANRWDESLRDVAHKVYTHDVFVRD >gi|307679195|gb|GL457052.1| GENE 3 2523 - 2591 65 22 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPQNSLKVERYYHIMNCTAYFY >gi|307679195|gb|GL457052.1| GENE 4 2802 - 3182 311 126 aa, chain - ## HITS:1 COG:pli0049 KEGG:ns NR:ns ## COG: pli0049 COG3316 # Protein_GI_number: 18450331 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Listeria innocua # 1 121 75 195 226 224 97.0 4e-59 MDETYIKIKGRWHYLYRAIDADGLTLDIWLRKKWDTQAAYAFLKRLHKQFGEPKAIMTDK APSLGSALRKLQSVGLYTKTEHRTVKYLNNLIEQDHRPIKRRNKFYQSLRTASSTIKGME TPSRNI >gi|307679195|gb|GL457052.1| GENE 5 3297 - 3404 204 35 aa, chain - ## HITS:1 COG:pli0049 KEGG:ns NR:ns ## COG: pli0049 COG3316 # Protein_GI_number: 18450331 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Listeria innocua # 1 35 1 35 226 67 100.0 9e-12 MNHFKGKQFKKDVIIVAVGYYLRYNLSYREVQELL >gi|307679195|gb|GL457052.1| GENE 6 3524 - 3859 209 111 aa, chain - ## HITS:1 COG:no KEGG:Lbuc_0635 NR:ns ## KEGG: Lbuc_0635 # Name: not_defined # Def: filamentation induced by cAMP protein Fic # Organism: L.buchneri # Pathway: not_defined # 5 105 120 217 218 77 39.0 1e-13 MLTEDEVQNQYDEIMNRDISETEKALRLFLFISKNQIFWDGNKITALLTTNKIMFDWDLG LLSIPETVFEKFNVLLSIYYNSNEDIDVEKILDFMYSNCIFGINYLRKNKL >gi|307679195|gb|GL457052.1| GENE 7 3935 - 4234 338 99 aa, chain - ## HITS:1 COG:no KEGG:NMC1958 NR:ns ## KEGG: NMC1958 # Name: not_defined # Def: hypothetical protein # Organism: N.meningitidis_FAM18 # Pathway: not_defined # 9 98 2 94 240 70 40.0 2e-11 MNEEKHPTFPDKYHLSRKESVYLLKKNIVELVYNAGEFEGLNTTLLQTEEIIKYNRADNV AVDAVLTVVILKRGFELLLNDVQEPLLETSKRINRIVAA >gi|307679195|gb|GL457052.1| GENE 8 4283 - 4882 428 199 aa, chain - ## HITS:1 COG:CAC1595 KEGG:ns NR:ns ## COG: CAC1595 COG0582 # Protein_GI_number: 15894873 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Clostridium acetobutylicum # 4 191 3 178 186 98 39.0 8e-21 MKSVEPIRDKKKIDAMKAILASGKYGQRNLVLFSIGINTAYRISDLRQLKLSDVVEISRG RVIVKERLAMKEQKTAKHNSVFISNKLRKVILDYVQSEFLEQLQVQDFSNYLFPSRKGAD TPLTRQSLWRIIHEAGTAVGLKEIGPHSMRKTFGYFLYKQGTKTEIIQSLLNHSSQRETL RYIGITQEDKDTAVKSLDL >gi|307679195|gb|GL457052.1| GENE 9 5407 - 6345 854 312 aa, chain + ## HITS:1 COG:L157055 KEGG:ns NR:ns ## COG: L157055 COG1893 # Protein_GI_number: 15673305 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate reductase # Organism: Lactococcus lactis # 1 312 1 312 312 514 80.0 1e-145 MKIAIAGAGAMGSRFGLMLKQGGNDVLLIDGWQEHINAIKENGLKANYNGEEITVKVPIV NQNEVPTGEQFDLIILFTKAMQLEKMLQDVKPLIADHTEVLCLLNGIGHEDVIEKFVPME KIFIGNTMWTAGLEGPGKAKLFGSGSVELQNLGIGQEESAKKLAETLSASGLNAKYSDNI HYSIYRKACVNGTMNGLCTILDVNMAGLGATKPAHDMVVTIVNEFAAVAAKENVNLDIPE VIEHVETCFDPTTIGMHFPSMHQDLIKNNRLTEIDYINGAISRKGKKYGVVTPYCDFLTQ LVHSKEEILGAK >gi|307679195|gb|GL457052.1| GENE 10 6371 - 7408 1031 345 aa, chain + ## HITS:1 COG:SPy0851 KEGG:ns NR:ns ## COG: SPy0851 COG3641 # Protein_GI_number: 15674884 # Func_class: R General function prediction only # Function: Predicted membrane protein, putative toxin regulator # Organism: Streptococcus pyogenes M1 GAS # 3 345 5 352 352 268 53.0 2e-71 MEEKLTPKIFLNKVLAGTATGIIVGLIPNAVLAAILKLFGENTLAVTITQMAVIFQLATP LLIGALIAVQFGFKPMQMLVVAGAAFVGSGVVKFNPDTATYIGAGTGDIINTMITASIAV GMILLIGEKFGSVAIVATPIVVGIGAGLIGYYLYPYVTKITAAIGDLINTFTTLQPILMS ILIACSFAFLIISPISTVAIGMAIQLNGVSAGAAAMGVAATTVVLVVNSWKVNKPGVTLA IALGAMKMMMPNLFRKPIILVPCLFTAIISAIPVALFSVSGTPASAGFGLVGLVGPLASL DAGLSIILLLISWFVVPIVAAFVGQILFEKILKLYDRKDVFEFLG >gi|307679195|gb|GL457052.1| GENE 11 7433 - 7546 123 37 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLTLFCAIEVGESQRKEKGTLNSVFLVNSTMKYLNTL >gi|307679195|gb|GL457052.1| GENE 12 7713 - 8018 115 101 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 2 99 293 390 391 100 55.0 6e-22 MIEKWQKTYPKVTQSLIKNQDLLTFYEFPPGIRRSIYSTNLIESFNKQIKKYSRRKEQFQ NEESLERFLVSIFDTYNQKFLNRSHKGFQQVTDTLASMFTE >gi|307679195|gb|GL457052.1| GENE 13 8346 - 8600 157 84 aa, chain - ## HITS:1 COG:MT3742 KEGG:ns NR:ns ## COG: MT3742 COG3328 # Protein_GI_number: 15843250 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mycobacterium tuberculosis CDC1551 # 3 77 311 385 409 68 38.0 3e-12 MHILENGFEDAIQILSFPENIRRRIRTTNVLERLNEEIRRRERVIRIFPNINSITRIIGT LLMEKDTEWLASPRKYLEFNSNNI >gi|307679195|gb|GL457052.1| GENE 14 8783 - 10090 857 435 aa, chain + ## HITS:1 COG:FN0599 KEGG:ns NR:ns ## COG: FN0599 COG3464 # Protein_GI_number: 19703934 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 15 421 7 410 428 222 31.0 9e-58 MSITKNIKCTDENTSKSIKQILNIKDSHISFSKDAISKESIHGRMANVFTGLLTGEAPRC EYCGFDSVIRHSYQDSWIQLLPYQEVPTYLHLYKQRFRCTRCRHTFSAKTYYVAENCYIS QALKFAIAVDLKKKISMKDIAQRYFVSTKTVERVLDSFFEEPRKKPNYLPKHLLIDEFKG TSDCEGAMCFIISDADTGKIFDILDDRRNFKLRAYFQRFTLKARKRVTHIVMDMNASYDA VTKEVFPNARISIDRFHVIQQITRAFNKQRIQTMNQLKKSDPQAQKDYRKLKKYWRTILK KNAKLNYTSFKQFPLFHRKYLTESEVLDYLLSIDDQLRQSYEVYQELLAAFDAKDFTEFF DLIESLPHSMNEGFKKAIRYLRKHKEAITNSFKISLFKRKTGGKEQPYQSNQKNSFWIPD FPSPSDACPHPAKYL >gi|307679195|gb|GL457052.1| GENE 15 10437 - 10667 234 76 aa, chain + ## HITS:1 COG:no KEGG:EF0480 NR:ns ## KEGG: EF0480 # Name: not_defined # Def: excisionase, putative # Organism: E.faecalis # Pathway: not_defined # 1 76 1 76 76 121 100.0 1e-26 MDFQDYEKIFESYPSILKITDLTKMLNIGKNKAYNLLKDKSIENIKIGARYKIPKKAVIE YILKIQDEGKNHAIIE >gi|307679195|gb|GL457052.1| GENE 16 10711 - 11880 896 389 aa, chain + ## HITS:1 COG:mlr0475 KEGG:ns NR:ns ## COG: mlr0475 COG0582 # Protein_GI_number: 13470699 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Mesorhizobium loti # 139 385 147 388 399 120 31.0 5e-27 MKLRANIIEKRGTLQVIVSYKDSNGKIRQKWKDTKLKKKGNKKRAEKIRDEFLLELESQL AMECKCANPDLLFYDYLLNYLEVSKKQVAFNTYVGYKHYVHNRIYKFFYPKKIKLNRLKP YHLQDFYQYMLNDDCTANTVIHYHAFIRKALQEAVITELISTNVADKVRKPKKKQFVSQV YNQHEILKLLDILSEEKLYLVVLLTAFYGLRRSEVLGLKWSAIDFLNKKIMINHVIIENP ENMSQLIKKDQTKNSSSYRTLPLVETIERALVNQAKWQQDNRILLGEDYILKDSEYVFTM EDGRLMKPQYVTHRLSKLIKKNGLKKIRFHDLRHSNASIMLDSGQNMKSIQEWLGHASYS TTANLYTHLTAGVKERAAEALENAFGFKE >gi|307679195|gb|GL457052.1| GENE 17 12157 - 12294 247 45 aa, chain - ## HITS:1 COG:no KEGG:EF0477 NR:ns ## KEGG: EF0477 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 45 1 45 45 75 100.0 6e-13 MATIILSILIFGTAGIITYRRIKKGESCEDCQTACPVKKEQSSQE >gi|307679195|gb|GL457052.1| GENE 18 12301 - 14451 2280 716 aa, chain - ## HITS:1 COG:L190009 KEGG:ns NR:ns ## COG: L190009 COG0370 # Protein_GI_number: 15672169 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein B # Organism: Lactococcus lactis # 5 701 4 702 709 817 56.0 0 MTQQIALAGNPNSGKTTTFNMLTGANQYVGNWPGVTVERKEGVAKKDKTLIIQDLPGIYS LSPYTPEEIVARDYLLEDQPSVILNILDVTNLERNLYLTTQLIETGLPVVCALNMMDLLE KNGQTLNSEKLSYGLGVPVVEISALKNRGLDHALKQSKQRANAIETEVIYPSYDNRLEAA LAEIVDILGNIVPETQQRWYSLKLFERDVRTKEQLLLSSFQEKEIEEVIQITEKIFQDES EAIIINERYAFIARLIALCATKKTEMTFTHSDKIDRVVTNRWLALPIFAFVMWLVYYLSI QTVGTMGTDWLNDVFFGEWVPQFVGNWLAQWQVAPWMQSLILDGIIAGVGAVLGFLPQLA VLFLCLGFLEDCGYMARIAFVMDRLFRKFGLSGKSFIPMLIATGCGVPGVMASRTIENER DRRMTIMVTTFMPCSAKLPIIALIAGAFFPNQSWVSPSAYFLGVASIVLSGIALKKTKHF SGDPAPFIMELPAYHLPQLRSVVRHAYERCRSFVKKAGTIIFVSSILIWFMSHYSVTFQP VPESQSILAFLGKGLAVLFIPLGWGNWQGAVATITGLIAKENIIGTLGILFGNVKDVSEN GVEVWGALQHTFTPVAAYSFLTFNLLCAPCFAAIGAIRREMGDLKWTLGAIGYQCGLAYM VSFVIYQLGHVLVEKGTLTLGTFLAMGVVLAGFYFLIRKPKPGKESVQAITSLERG >gi|307679195|gb|GL457052.1| GENE 19 14448 - 14921 552 157 aa, chain - ## HITS:1 COG:L192240 KEGG:ns NR:ns ## COG: L192240 COG1918 # Protein_GI_number: 15672170 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein A # Organism: Lactococcus lactis # 1 151 1 148 152 102 36.0 4e-22 MITLAQAEVGKVYTVESVQADVQTKKHLNNLGVVAGQAVVLVNYQNQNGIVLLHNSRIAL TDTILQAIHVEERSANEKVWVSLDTLKVGERATIVGIHGQGAVKRRLMDMGLTKGTVIFI RKVAPLADPIEINVRGYELTLRKSEAELILVEKEESE >gi|307679195|gb|GL457052.1| GENE 20 15435 - 15659 343 74 aa, chain + ## HITS:1 COG:SP1178 KEGG:ns NR:ns ## COG: SP1178 COG0695 # Protein_GI_number: 15901043 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutaredoxin and related proteins # Organism: Streptococcus pneumoniae TIGR4 # 3 73 2 72 72 85 53.0 2e-17 MNVKIFSKNNCIQCKMAKRFLSENNIAFEEINIDAQPDAIDWLKEQGFQSVPVITSEATT VVGFRPDQLKQLAS >gi|307679195|gb|GL457052.1| GENE 21 15661 - 16038 266 125 aa, chain + ## HITS:1 COG:L4702 KEGG:ns NR:ns ## COG: L4702 COG1780 # Protein_GI_number: 15672958 # Func_class: F Nucleotide transport and metabolism # Function: Protein involved in ribonucleotide reduction # Organism: Lactococcus lactis # 1 121 1 129 140 112 43.0 1e-25 MKLVYFSVTGQTRRFIKKLDLPAYELEPANPFFEINEPFILVIPTYDAEITEVVNDFLDY KSNQELLVGVAGGGNRNFAELFVYTAKDIARDYHVPLLYSFEFSGTDEDVETFKKVVEEI ESKRN >gi|307679195|gb|GL457052.1| GENE 22 16019 - 18178 2119 719 aa, chain + ## HITS:1 COG:SP1179 KEGG:ns NR:ns ## COG: SP1179 COG0209 # Protein_GI_number: 15901044 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 719 1 719 719 1144 77.0 0 MSLKEIKDVSYFKLNNEINRPVDGQIPLNKDKEALAAFFKENVEPNTRKFSSAEEKINFL MKEDFIETEFIEKYSMDFIEKLYAFLDEQHFQFKSFMAAYKFYSQYALKNNAGTEYLETY EDRVAFNALYFADGDEELALTLADEMIHQRYQPATPSFLNAGRKRRGELVSCFLVQVTDD MNSIGRSINSALQLSRIGGGVGITLSNLREAGAPIKGYDGAASGVVPVMKLFEDSFSYSN QLGQRQGAGVVYLNVFHPDIEMFLSAKKENADEKIRVKTLSLGVIVPDKFYELTRNNEDM YLFSPYSVEREYGVPYSYVDITKEYDNLVANPNIRKRKIKARDLENEISKLQQESGYPYI INIDTANKNNPIDGKIIMSNLCSEILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLM ESPDFGKSVRAMTRALTFVTDASEIDVVPTIQNGNRLSHTIGLGAMGLHTFFAKNHMEYG SEESLDFTDIYFMLLNYWTLMESNQIAKERNQVFHNFEKSDYASGAYFDKYIEGNFTPKF DKVKEIFKDIQIPTAEDWAALRDAVKKDGLYHQNRLAVAPNGSISYINDTSASIHPITRM IEERQEKKIGKIYYPAPYLANDTIPYYTSAYDMDMRKVIDVYATAQQHVDQGMSLTLFMR SEIPEGLYEWKETPKQTTRDLNILRHYAFNKGIKSIYYIRTFTDDAEEIGSNQCESCVI >gi|307679195|gb|GL457052.1| GENE 23 18379 - 19344 1092 321 aa, chain + ## HITS:1 COG:SP1180 KEGG:ns NR:ns ## COG: SP1180 COG0208 # Protein_GI_number: 15901045 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, beta subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 319 1 319 320 529 85.0 1e-150 MATYYEAINWNAIEDVIDKSTWEKLTEQFWLDTRIPLSNDLDDWRTLSDLEKTTVGYVFG GLTLLDTVQSESGMDQLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIDDI FEWTNTNKHLQYKAERINEIYKNGTPLEKKIASVFLETFLFYSGFYTPLYYLGNNKLANV AEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQDKLKDWMYNLLYELYENEERYTEELY DDLGWTEEVKTFLRYNANKALMNLGMDPLFADTANDVNPIVMNGISTGTSNHDFFSQVGN GYLLGTVEAMKDDDYLYGLDK >gi|307679195|gb|GL457052.1| GENE 24 19384 - 20670 1109 428 aa, chain - ## HITS:1 COG:BMEI0229 KEGG:ns NR:ns ## COG: BMEI0229 COG1512 # Protein_GI_number: 17986513 # Func_class: R General function prediction only # Function: Beta-propeller domains of methanol dehydrogenase type # Organism: Brucella melitensis # 118 262 28 170 253 91 34.0 3e-18 MDKKVEKIQEKVRLFYKKHQRNTTIVVVISLSMILILGMAAWYEGKGISYEAKQTALREK QHALQKKRDDILAGKMTEASTQTTINNFSKQEITGENELVTITGTNGQLNINDANIYVSD NAGIVSNQLKQKMFQLNQQLLENANGAQFMLITVPALPSGESVESYSNKIANQLGVGDRE KNNGVVFLMAIEDRESRLEVGYGLESILTDSYADDIINNEEVKEAFRDEDYNTGLNKIID QVSAAINSKTAQVDNELTNIQTELNTNTTKRNVLLMASIAGMLICAVYILQILRTRKLVK KMYQDYLNCLPTKAVLNNSEQTKKVLNKMKKTSFYCLYLNGATLFATKGKIRRATKRGSL LSIYPNAKKQSFGRLLVGDTLYSYDGSVLTYAYLNSQYNPSNHSSSGSSSGGSFGGGSFG GGGASGSW >gi|307679195|gb|GL457052.1| GENE 25 20715 - 21284 768 189 aa, chain - ## HITS:1 COG:TM0961 KEGG:ns NR:ns ## COG: TM0961 COG1704 # Protein_GI_number: 15643721 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Thermotoga maritima # 26 188 32 193 193 136 45.0 2e-32 MNKKNKFLSIIVVVVVIIGAFVMKAYNQLITLDNKVEAEWSQVENVMQRRADLIPNLVSS VQGSMTQEKEVLKEITEARKAYAGAKSSSEKGQANEQIEKGLGNFVTVLNEDYPKLASSE NVKTLMTQLEGSENRISVERRNYIQAVETYNQQISKFPDKIIAKLLGFEKKTNYVATEQG KEVPQVEFK >gi|307679195|gb|GL457052.1| GENE 26 21443 - 22144 1035 233 aa, chain - ## HITS:1 COG:FN0215 KEGG:ns NR:ns ## COG: FN0215 COG1285 # Protein_GI_number: 19703560 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Fusobacterium nucleatum # 3 229 13 242 244 139 37.0 3e-33 MLQLTIPEIILRLVLAMVMGGAIGFERQYKNRPAGMRTHILVCMGAAIIALIQSQIAINA LKDALANPALTGVIRSDQARLIAQVVSGIGFLGAGTIIVTKQSVTGLTTAASLWTVAGLG IAVGMGYYTIALTSFIGVLFALTIVKRIIHVPTIKKLEIRYQHKQETKEFINQYFEEKHI EIYDVNFNVSWVDDTKIYTNIYTIDLPKGLTYADVIEDLSVSNNVTKLRLINV >gi|307679195|gb|GL457052.1| GENE 27 22240 - 22941 1081 233 aa, chain - ## HITS:1 COG:L14408 KEGG:ns NR:ns ## COG: L14408 COG0363 # Protein_GI_number: 15673555 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Lactococcus lactis # 1 233 1 233 235 295 63.0 6e-80 MQIIRVANAEEGGKKAFELIKEGMNNGAKVLGLATGSTPETLYKEMTASDVDFTEMTSVN LDEYVGLGGEDEQSYRYFMNKHLFDKKPFKETFVPNGKAEDLDAASAEYEKIIDAHPVDI QILGIGQNGHIGFNEPGTPLDSLTHVVELTESTINANKRYFDKVEDVPTRAVSMGIGSIM KGKKMILMAYGEAKAEAIKGMIDGPVTTDMPASALQNHQDVVIIIDDAAASKL >gi|307679195|gb|GL457052.1| GENE 28 23071 - 24279 1537 402 aa, chain - ## HITS:1 COG:BH3670 KEGG:ns NR:ns ## COG: BH3670 COG1316 # Protein_GI_number: 15616232 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 5 305 2 303 304 234 42.0 2e-61 MKLWKKVVLGFLSVLLVVVAGVCAYGIKMYSDANSTINGIYQSVNRKSNKGATANIDAQE PFSVLLMGIDTGDLGRTEQGRSDTTMVVTINPKENKSTMISLDRDILTDIVGNDTQDKLN HAYAFGGAEMAINTVQELLDIPIHHYVSINMKGLKDLIDAVGGIEVDNTIGEFTLDGITV PAGKIKLDGTTGLAYARMRHEDPEGDVGRQRRQREVVEKIVRKVMSFDGVSKYRKILDAV EANVKTDLTWDDMMDIQSKYLSAFKTIDSEQLQGYSATIDDIYYQVLDPNSLYKTQTTLR KQLGLKEHASEREKDLAFYNQFSYAVTDTALIGESGDSSVNSSTSSSSTADTTAGQTEYN GNTQQAAEGAYDPNTYVDPNTYTDPNAYADPNTYVDPDAPQY >gi|307679195|gb|GL457052.1| GENE 29 24429 - 25409 996 326 aa, chain - ## HITS:1 COG:lin2126 KEGG:ns NR:ns ## COG: lin2126 COG0253 # Protein_GI_number: 16801192 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate epimerase # Organism: Listeria innocua # 3 325 4 323 329 277 46.0 2e-74 MNVMMQKVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVGEGT HGTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQAPSLAE EVATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRFTAVAVPNPHLVAFVDHET LNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGTAMCASS LLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDDSYWMELIGNATITHLIEGSLTDLLNG AFEKITITETNEQKHYQEFLQTLSQK >gi|307679195|gb|GL457052.1| GENE 30 25597 - 26205 761 202 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent [Streptococcus pneumoniae TIGR4] # 1 202 1 201 201 297 67 9e-80 MTYTLPELPYAYDALEPYIDVETMHLHHDKHHNTYVTNLNAAIEKHPELGEKSVEDLISD MNAIPEDIRTAVRNNGGGHANHTFFWEIMAPNAGGQPTGAIKEAIDETFGSFDEMKAAFK TAATGRFGSGWAWLVVNNGKLEITSTPNQDSPLMDGQTPVLGLDVWEHAYYLKYKNVRPD YIEAFWNVVNWDKVNELFAAAK >gi|307679195|gb|GL457052.1| GENE 31 26399 - 27208 944 269 aa, chain + ## HITS:1 COG:no KEGG:EF0462 NR:ns ## KEGG: EF0462 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 269 1 269 269 499 100.0 1e-140 MNTLQLFKQAFFSVSELRHAKKMAFWKVILYAVFLSAILALPITKQVFSVLQEVQQDGQK IAEKLPDFSIENGTLQTKAKESGFIYQTDSIIFTFDPDGKRTAADVQKDLIGNAFGLAFL QDEFVVALPNSGATESILGTDQFIFPYSKGTLDGVNAQSIKTALSEAAIPWWTKLIVFLV AIYPVLIGLVLDLLIAAIGASLYSKLRFYSLRLIDCLKIITYCATVPVILSAILNFVNPM FNDGILVILLSLFFFFVTTKNEPRNIPGS >gi|307679195|gb|GL457052.1| GENE 32 27205 - 27660 502 151 aa, chain - ## HITS:1 COG:SP0064 KEGG:ns NR:ns ## COG: SP0064 COG2893 # Protein_GI_number: 15900009 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Streptococcus pneumoniae TIGR4 # 1 128 1 124 134 70 37.0 9e-13 MKPKLILMSHGRMAEETLASTQMIVGELADAAIVSMTAEDGLSGTQAKLAAILKEAGNVP TLVLADLKGGTPCNVAMMAMGTYPQLRVVAGLNLAMAIEAAVSPVENVDELAAYLTQIGQ SAVTTIDLPELTDKKNLKNSKKVLSQGQHLF >gi|307679195|gb|GL457052.1| GENE 33 27670 - 28659 858 329 aa, chain - ## HITS:1 COG:lin2030 KEGG:ns NR:ns ## COG: lin2030 COG1680 # Protein_GI_number: 16801096 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Listeria innocua # 7 329 6 326 335 176 33.0 7e-44 MNQIAIQETIQRLINQQVVPGVAWGTITEDSLSEQYTGFLGNTGPFARQKISSASLYDLA SLTKVIGTTNRMLQLIDTNQLTFSTTVGEILPDYQGLSCSIGELLLHQSGLPADVVDKKN VTKKSLQEIILTHSLSERGKTTYSDLGYYLLGEIIQVLDRCSLEESFQTYVFQPMNLQHT SFTVSDFAQAVPTEITKQRGVIQGVVHDSKAYQLKAPIGSAGLFATLPDLLTFVQCFMNN RYPSGKPLFSEKMFDALWSMNQGGRTFGWEVKKTQAGAGYLYHTGFTGTAIGMKKETKEA LILLTNRIHPTREERGFLKARTKIYQQYF >gi|307679195|gb|GL457052.1| GENE 34 28672 - 29562 1069 296 aa, chain - ## HITS:1 COG:YPO2925 KEGG:ns NR:ns ## COG: YPO2925 COG2103 # Protein_GI_number: 16123112 # Func_class: R General function prediction only # Function: Predicted sugar phosphate isomerase # Organism: Yersinia pestis # 1 295 1 295 295 281 50.0 1e-75 MNLEGLTTEARNEATKKIDQVSTLEMVTLINQEDQKVAQAIEKVLPQIAAAIDAAAERFK KGGRLIYCGAGTSGRLGALDAIELTPTYSVSPERAFGILAGGEKAMYQAIEGAEDSKELA IEDLTQHQLTARDVVIAIAASGRTPYAVSAIEYGKKVGALTISVTCNNQSPMNQLAEIGI APIVGPEVITGSTRMKAGSAQKMVLNMFSTGIMVKVGNIYQNLMVNVQPTNEKLIQRATN IIKEAAEIEESQAKEYLEAAQLEVAPAIVMAKAHVDFQKAKQLLAEHDGRISEVLA >gi|307679195|gb|GL457052.1| GENE 35 29577 - 30428 621 283 aa, chain - ## HITS:1 COG:L147291 KEGG:ns NR:ns ## COG: L147291 COG1737 # Protein_GI_number: 15673115 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 1 283 1 283 283 124 28.0 2e-28 MEPIRSIRQKYKDFSKVNKRIADYILKDPTRLLSLTANEIASNSETSPASVTRFSKQLGF DSWEELKLSIAAVQAASNGKKDIDPIVAADDSVDTICMKVESLLNATIEDLFYTVDKQAL ERAIAHVKKAEKIHLVGIGASSLTTYNLYHKFNRAGRQAIFNYDSHMMLEFLNYATAQDI LITVSYSGLTKEALIACEIAKNRGATVIFITSNDGENVRSLSDEVLLVPNNEHLIRVGAI SSIASSMAIGDVLYLGSIQDDLDTEIERNMIETSQLVSRLKEK >gi|307679195|gb|GL457052.1| GENE 36 30445 - 30921 671 158 aa, chain - ## HITS:1 COG:lin0021 KEGG:ns NR:ns ## COG: lin0021 COG3444 # Protein_GI_number: 16799100 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Listeria innocua # 3 148 6 151 162 142 54.0 3e-34 MTIVHARVDERLIHGQVATVWTNTVGAQRIMVVNDAAVKDQLQIGALKMAKPAGVKLSIL SKRKAIEKILAGNYDEEKVFLITKDIADMAALIDGGVPLQSFNVGNISQKEGSRAIKKSV ALTDEDIQTVRRLTDNGVTITAQMIPSEPNEAILTFIK >gi|307679195|gb|GL457052.1| GENE 37 30952 - 31770 1013 272 aa, chain - ## HITS:1 COG:lin0023 KEGG:ns NR:ns ## COG: lin0023 COG3716 # Protein_GI_number: 16799102 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Listeria innocua # 5 262 16 272 275 207 45.0 2e-53 MTNKLTKKDINKVYVRNLFGYQWGWNYEKMQGLGYAWVMMPALKRLYSEDPVAMKKALKT HLGFMNTTPAMSHLIVGADMALEEEVGIEDETAITGLKTGLMGPFAGVGDTIFIAIYRAI VFSIAAYMAQGGQVVGLLIPLIAGAVVLWVRYKFTWIGYHQGKKIATEFADKMKLFTQGA AILGLTVVGGLIPSVITYKLDLTYKMGDVTLSVQEMLDKILPALIPLGIVLLSYWLLGKK KMNSTRLIFVLILIGMVLGNLQPMLAWVGGLF >gi|307679195|gb|GL457052.1| GENE 38 31763 - 32566 1002 267 aa, chain - ## HITS:1 COG:lin0022 KEGG:ns NR:ns ## COG: lin0022 COG3715 # Protein_GI_number: 16799101 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Listeria innocua # 1 267 1 267 267 216 47.0 3e-56 MTVSIGIILILCLYTVVGVLDQISIQIGPYTPLFAATFTGLVLGDVQTGLMIGATLQLMT LGVATYGGATVPDFLSGAIMGTAYAIISGKGAEYGIGVAVPIGLLLTQLDILGRMANTFF QHKADRYAEEGNYKGVERCNVLGIFPWTISRVIPVFIGLAFGEQVVNAINNWIPIWVMNG LKAAGAILPAMGIAILMRYLPIKTYWPYFIIGFVLLAYGAQFFSVLGVALVGLALAAIYV MNHNKGGAATTSGTVIYEDDEEVEIDD >gi|307679195|gb|GL457052.1| GENE 39 32727 - 33506 543 259 aa, chain + ## HITS:1 COG:lin0630 KEGG:ns NR:ns ## COG: lin0630 COG0730 # Protein_GI_number: 16799705 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Listeria innocua # 4 252 3 243 246 68 26.0 2e-11 MRVLLIYFITIFLSNTVGALSGMGGGVIIKPVLDFLGFHSLNSIAFYSSVAVFVMSISST YKQYQNGVQIEWKKAASISFGSLVGGMLGDLLLNQAIALAPNEEKVQLIQYIIMLLTLVL VLLYNQFSNWHLHLNGLSIFLIVGLGLGILSTFLGIGGGPINVACLILFFGMDIKSATVY SIITIFFSQLAKLGNIGLTTGVAVFDLTMLLAIIPAALFGGYVGGLFSKKLSQQRVAQIY SLVVFLVILLNMYNLWTVI >gi|307679195|gb|GL457052.1| GENE 40 33543 - 33944 561 133 aa, chain - ## HITS:1 COG:lin2302 KEGG:ns NR:ns ## COG: lin2302 COG1764 # Protein_GI_number: 16801366 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Listeria innocua # 1 132 1 137 138 152 59.0 1e-37 MKKIYETTIINTGGRAGEVHSPDKSFSYAVASPGVKKENTTNPEQLFAAAYSACFNGALE LVMDQEKVEGKSTVTARVSLFQGEDGFSVGAELEVHIDGVDQAKAEELVKKAHEICPYSK ATRNNIDVKLTVI >gi|307679195|gb|GL457052.1| GENE 41 34165 - 35691 1566 508 aa, chain + ## HITS:1 COG:lin0373 KEGG:ns NR:ns ## COG: lin0373 COG0365 # Protein_GI_number: 16799450 # Func_class: I Lipid transport and metabolism # Function: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases # Organism: Listeria innocua # 7 507 6 508 508 644 59.0 0 MTHLLDYQPLNLYTNYQEAAEKTPTVPIIFDESLPAFPALGLETTYGESHQEILKRAYQL ATLGVKKGDKIIIYKSPKFDTYLLAVAASYLAAVPVMVSYHLPFETIEVFVDRLEDPYIL FDDVTAEKVQAVRNSSANKKLSVASLLEADATEVPQDELTKDEIAYMTHTSGTTGIPKLI CHSNHSMGWRTKWQKTIFTKIAEKKLVGFHISPVHSRFNIGVSSLMAMGFPMMPLANASS EKVAEMFSTYQPIAVETHPNNFVQWVRLAKEKPEAFASVHYYHSTFDAINNATMVAFLKA SAANEPIFLQVYGQSECGPMILRAHTLESLKDSDARDMGVGLEDLTQARITDEKGQVLPA MTDGHIQFLSKGRALTYYKEDARFAENVYGEWWDSGDYGMLDERGHLFLKDRQVDLIENI DSNLAIEDHLLDALDFLEEVIIVRGKENEPQPILAVVPGEEMDWDAWWTQVADLPHLNEP IIMAFDEIPHTATMKVQRLQLEKWLKEQ >gi|307679195|gb|GL457052.1| GENE 42 35943 - 36641 688 232 aa, chain + ## HITS:1 COG:yieK KEGG:ns NR:ns ## COG: yieK COG0363 # Protein_GI_number: 16131586 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Escherichia coli K12 # 24 225 1 209 213 214 50.0 1e-55 MKILIKQDFDTMSEWAKMLLLSTMSQDKRVNLSITAGKTPALVYQKLASIVKNSSDFDNV HYYNFDEIPVPHQKEGITLTDLRTLYLTPAEISEQNIHPLTVENFQQQEQRIADAGGLDL MLIGLGADGHFCGNMPTTTHFKNETYQVTVTGSEPWFVPEMMQPGMTFVTMGPASIMKVK HLVLIVNGEQKAQMVKQVLQGPVTETYPASILQLHPNLTVLLDEAAASQLEK >gi|307679195|gb|GL457052.1| GENE 43 36698 - 37801 1049 367 aa, chain - ## HITS:1 COG:lin2664 KEGG:ns NR:ns ## COG: lin2664 COG4948 # Protein_GI_number: 16801725 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Listeria innocua # 1 362 1 362 374 372 50.0 1e-103 MNIQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGNQGFGELVAFEQPDYVQET LVTERFIIQQHLIPLLLTEALEQPQEVSTIFEEVKGHWMGKAALETAIWDLYAKRQQKSL TEFFGPTRRKIPVGISLGIQEDLPQLLKQVQLAVEKGYQRVKLKIRPGYDVEAVALIRQH FPNLPLMVDANSAYTLADLPQLQRLDHYQLAMIEQPFAADDFLDHAQLQRELKTRICLDE NIRSLKDCQVALALGSCRSINLKIPRVGGIHEALKIATFCQENNLLVWLGGMFESGVGRA LNLQFASQPTFSFPGDISATERYFYEDIITEPFILEQGTMTVPQGLGIGVTLSQTNLLKY SQYQKIM >gi|307679195|gb|GL457052.1| GENE 44 37802 - 38626 852 274 aa, chain - ## HITS:1 COG:BS_ytxM KEGG:ns NR:ns ## COG: BS_ytxM COG0596 # Protein_GI_number: 16080133 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Bacillus subtilis # 25 270 27 271 274 192 40.0 6e-49 MERLIRGMQYHYQWLTPFDAKRTTVVCLHGFTGTLATFAAVFPSQTPYNVLGIDLPGHGA TASLVAPERYTMKQVCHDLAELTESLNLPCFCLLGYSMGARTALGFALHYPQKVQHLLLE SGSPGLATVAERQTRICQDHRLAERLLEEPLVDFIDFWQELPLFQTQKALSVAQQMAIRQ ERLSQSAFGLASSLWYMGTGAQESYWERLAELQPIPTDLLVGGEDQKFIGIAKKMQARQP LLRLTIFPEAGHCIHLEQPTIFYEKVTALLEGAV >gi|307679195|gb|GL457052.1| GENE 45 38614 - 40347 1698 577 aa, chain - ## HITS:1 COG:lin1783 KEGG:ns NR:ns ## COG: lin1783 COG1165 # Protein_GI_number: 16800851 # Func_class: H Coenzyme transport and metabolism # Function: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase # Organism: Listeria innocua # 2 565 3 573 580 508 45.0 1e-143 MNHQETMTDYLTAFIEGLKNSGVEQAVISPGSRSTPLALLLHRETAIQTFVDVDERSAAF FALGLSKASQKPVVLLCTSGTAAANYYPAICEANISHVPLVVLTTDRPHELRQVGAPQAM DQLQMYQNHVKLFVEMALPEATEEMLNYAYWQGAKGAAFAQQTPAAPVHLNFPLREPLLP DLERKTKSSQQTALFAGQSILSTEQVQQLADQWYQKNGVLVVGGSHTEEEAALFIQLAEA LQWPLLADPLANIVTHGQNSEVVIAHSDLFLNVATLPQEPEVVVRFGSLPISKNIMLWLK RLATTETTFYFVDENGQWQEQLKKSQTVIQAKETTFVEQLLTVVKSTEATWLAQWLLLEK TVSEVLLETLNATELNETTASLAVHQTMKENGQLFVSNSMAIRYLDRFMDSRPYRMFGNR GINGIDGIVSTALGMSAVAPTQQNVLLIGDLALYHDMNGLFLAKRYQLPLTIVLLNNNGG GIFSFLSQRTLREDDFEPLFGTPLDLDFSLVAELYGASYQEVKTIAELKQILQTAAEEPQ FQVIEVKGNRQENVHLYESILAEIGRRVERQGISWNG >gi|307679195|gb|GL457052.1| GENE 46 40347 - 41714 1521 455 aa, chain - ## HITS:1 COG:lin1784 KEGG:ns NR:ns ## COG: lin1784 COG1169 # Protein_GI_number: 16800852 # Func_class: H Coenzyme transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Isochorismate synthase # Organism: Listeria innocua # 2 453 4 459 462 310 37.0 3e-84 MKLPDELRQAYQKNARQFSWVFPLETEQTALAIFAAGEKAYQGERFFWQTPKKDFALVGF GYETILKGAETETHQLNNFLKKESATRFQNMSISGTGALLFGGLPFDTEQTPTEAWGELG EGWFYLPSILFTFSGSRIYGTLNFSGSSEQEVEERWSTLVAQFDRLLATCEELPAVAETK IDKEEVAVTEWLQAVNETVAVLREDGPLKKVVLARQLAVSSPEKIRSNQVLVNLMAQQQN TYLFALEAKDTSFIGATPERLLLGTKETFATACIAGTIKTGQTPEETKALGAQLLQDRKN TGEHQIVVERLAKELAKMTTSENSIQAPIILENRDVQHLYVPISGQRKPGISFLESVMQL HPTPALGGEPKELAVEWIRQYEPGSRGLYGAPIGWISGNDDSGEFAVALRSGVFAGQQGV LYAGCGIVADSQAELEREETKIKFQPMLRGIGGQV >gi|307679195|gb|GL457052.1| GENE 47 41711 - 43168 1235 485 aa, chain - ## HITS:1 COG:lin1780 KEGG:ns NR:ns ## COG: lin1780 COG0318 # Protein_GI_number: 16800848 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Listeria innocua # 3 474 6 463 469 377 42.0 1e-104 MTWLNKQVQKRPDHPAFYFQDESWTFLEVQQEVSHWVATYQQVLAPEEKRVALFSKNSKE LYFSILALWELGKELLFLNTHLTLAELTFQLKDAQVKTIIGAPETQALLEEISFVDVQPM VKKQHSLSHQEFQQPSDLESVASIMYTSGTTGQPKGVLQRFKNHLASARGTQENMGITAE DCWLCAVPLFHISGLSIVVRQLVLGCSIRLYDKFDEQQVTQDLQEGHGTVISVVATMLQQ LLSVYPEAGYRASFKGMLLGGGPIAPDKLAQCEEKGIPVIQSYGMTETCSQVVALKFEDA ALKIGSAGQPLKDMQIKIVDELGQEQPEKQVGEILLKGPNVVSGYLNQRQPEKWTADDWF KTGDMGYLDAQGYLYLVSRLSELIISGGENIYPTEVEQVLQAITGIKAAAVVGEPDAQWG AVPVAYVISDQELTLAQIQDQCSRKLAKYKRPKRIYFCHSFPQTASGKIAKHRFMTEERE AFLIR >gi|307679195|gb|GL457052.1| GENE 48 43173 - 43988 1086 271 aa, chain - ## HITS:1 COG:lin1781 KEGG:ns NR:ns ## COG: lin1781 COG0447 # Protein_GI_number: 16800849 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroxynaphthoic acid synthase # Organism: Listeria innocua # 3 271 4 272 272 461 81.0 1e-130 MRNWTTIKEYDEILFEQAGKVAKITINRPHVHNAFTPKTVMEMIDAFNISRDKEDVGVII LTGAGDQAFCSGGDQKVRGNGGYVGEDNIPRLNVLDLQRLIRVIPKPVIAMVKGWSIGGG NVLQLVCDLTIAAENAKFGQTGPNVGSFDGGYGSGYLARVIGHKKAKEVWFMCKQYSAQE ALDMGWINTVVPLDQVEDVTMGWAEEMLTKSPIALRMIKASLNADTDGLAGVQQLAGDAT LLYYTMAEAQEGRDAFKEKRTPDFDQFPKFP >gi|307679195|gb|GL457052.1| GENE 49 44243 - 44533 184 96 aa, chain + ## HITS:1 COG:lin2484 KEGG:ns NR:ns ## COG: lin2484 COG2050 # Protein_GI_number: 16801546 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein, possibly involved in aromatic compounds catabolism # Organism: Listeria innocua # 4 96 31 123 123 75 36.0 3e-14 MHKQPYGLVHGGLNGVLIETACSLGANENVPENTFAVGIDLQVNHLRSVHDGSLTVIATP DHSGKTLQVWEAKIYNADHQLTSVGRCTLTNRQKKQ >gi|307679195|gb|GL457052.1| GENE 50 44603 - 45202 895 199 aa, chain - ## HITS:1 COG:no KEGG:EF0443 NR:ns ## KEGG: EF0443 # Name: not_defined # Def: LysM domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 199 1 199 199 312 100.0 5e-84 MKSIKTILLGTTLAAGLGLFLGTDANAESLYTVKAGDTLSTISHQFAGDNSLIQKIASDN KLPNLDLIFEGEQLVIRSEKEVANTPAPAVEVAPVQQVVEQPVAQPVQQEVQQPVAQEVA QPAAPAASSDAKEWIAQRESSGSYDATNGQYIGRYQLSASYLNGDYSPANQERVADQYVA GRYGSWDAAKSFWLANGWY >gi|307679195|gb|GL457052.1| GENE 51 45709 - 45819 74 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKQKELNKKILYFACYLFILILFKKRTAKTTVKTNY >gi|307679195|gb|GL457052.1| GENE 52 45954 - 46028 90 24 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNLHLSHFIIKYSEYYKNWSFIYE >gi|307679195|gb|GL457052.1| GENE 53 46021 - 47502 1501 493 aa, chain + ## HITS:1 COG:L104437 KEGG:ns NR:ns ## COG: L104437 COG3104 # Protein_GI_number: 15672684 # Func_class: E Amino acid transport and metabolism # Function: Dipeptide/tripeptide permease # Organism: Lactococcus lactis # 5 493 2 497 497 511 55.0 1e-144 MSDKEQLEKLDKSFLGQPKGLATLFFTEMWERFSYYGMRAILMYYIYDTVANGGLGLPKA TALAIMSIYGSMVFMSSIIGGWVSDRVLGSRKTVFIGGLLIIAGHIVLATPFGVPALFVS IMLIVFGTGMLKPNVSGMVGHLYSKTDLRRDAGFSIFYMGINIGALIAPLVVGTLGQEYN YHLGFSVAAVGMFFGLLQYYFQGRKSLAGIGQAPTNPMSKEEQKKFAKAFMLAIVVALLI FGGAYVTGHLTIDFFINTISVLGILLPVYYFSKMLTSKDVTAEEKPKVLAYLPLFLAAIV FWSLEEQGSSILALFANERTQTSLFGFPIAASWFQSLNPVFVVILTPIFVTLWTKLGKRQ PSTVVKFSLGLVFAGLSFVLLMLPGLLYGTEGRVSPLWLFFSFFIMIVGEMCLSPVGLSI TTKLAPKAFEAQTVAIWLLADAASQAINAQIARFYTPGTESAYFGIVGLVAVVAGILLFI VKKPIQNLMGDVR >gi|307679195|gb|GL457052.1| GENE 54 47609 - 47809 336 66 aa, chain + ## HITS:1 COG:no KEGG:EF0439 NR:ns ## KEGG: EF0439 # Name: not_defined # Def: immunity protein PlnM, putative # Organism: E.faecalis # Pathway: not_defined # 1 66 1 66 66 90 100.0 1e-17 MRYLIGGIFLLISIWQFIVTGRTFSYLKKEGGKRTSPFILLGLWSSLVFAIISFAVAIAS FFYVSF >gi|307679195|gb|GL457052.1| GENE 55 47892 - 48728 847 278 aa, chain - ## HITS:1 COG:mll1734 KEGG:ns NR:ns ## COG: mll1734 COG1082 # Protein_GI_number: 13471685 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate isomerases/epimerases # Organism: Mesorhizobium loti # 19 219 17 218 304 90 28.0 3e-18 MLTLAVRAHDVGTKISPVELAKKIAETNITSIQFALGISYPEYASAAVLSPGLGSQLKNI FEDEKITISVLSCYINLIHPDLEEREKRLHQFETYIRYASMFGAKIVATETGSIYETIYY TEDNYTEEAYEEVLFSVRRLCREAEKYGIIVGIEPGINHPIHTIEKMQRLIDEVASTNLG IILDPTNLIRVDIDKTYLEIVEEAFECFGEKIVAFHLKDFIIRNQQIFPVAIGEGQVPLK ETIQFLNKHKPGLFTIFEETPFEKIASAYQKVSQYHSI >gi|307679195|gb|GL457052.1| GENE 56 48730 - 49650 871 306 aa, chain - ## HITS:1 COG:CAC2818 KEGG:ns NR:ns ## COG: CAC2818 COG2207 # Protein_GI_number: 15896073 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Clostridium acetobutylicum # 16 281 8 275 279 151 29.0 2e-36 MKSVKEIRKSQVNSMISDQYEIFHVKDMVSPEKTIYHYHDFYEVHCTLKGVATFFLDGHQ FDVEAGTVLLIHYHDLHRIIKQSTDNFERMYIFLTPDFLQQRSSKRTNLSACFQHFGQRR SKVIKVDVAKLANYLTPLDHSPLPEEYGADVRYEQQLLDFLIYLNQLVLKEENESQPKQM IENERIEAMITYISQNLDQPLTLEQMEKNFFVTKYYVTREFKKHTGFTFHQFVLKKKLLY AKQLLKEYRSASDVYLKCGFKSYPHFLKSFKKEFNMTPKEFLVKHKNNQIIHFDHYEESI KKVRLE >gi|307679195|gb|GL457052.1| GENE 57 49860 - 50150 258 96 aa, chain - ## HITS:1 COG:yiiL KEGG:ns NR:ns ## COG: yiiL COG3254 # Protein_GI_number: 16131741 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 96 8 103 104 105 52.0 2e-23 MQVYPDQHAEYQRRHEKLWPEMRQMLKEHGVIKYQIFLNTETSTLFGYLEIEDEARWEQI ALTPINQKWWNYMEDIMETNPDCSPVTAELKKVFEL >gi|307679195|gb|GL457052.1| GENE 58 50168 - 51016 1061 282 aa, chain - ## HITS:1 COG:lin2979 KEGG:ns NR:ns ## COG: lin2979 COG0235 # Protein_GI_number: 16802037 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Listeria innocua # 5 272 4 271 273 419 70.0 1e-117 MKKMNVLQAPFVEEMVKTTKNLYRLGWDERNGGNISYLLKEEEILPFLNPTQVLRKIPMK FDATKLAGKYFIVTGSGKYFKNVCDAPSENLGILRVSENGQELELLWGLEDEAVPTSELP SHFMSHIARLAVDPENRIVMHNHASHLLAMSFTHELDEKVFTRTLWQMCTECLVVFPDGV GIIPWLVPGTNEIGVATAEKMKESRLVLWPQHGIYGTGRDMDEVFGLIETAEKAAEVYTY VCAQGGVRQTISDADLWRLAEAFGVTPKVGYLEEKVSKRRKL >gi|307679195|gb|GL457052.1| GENE 59 51044 - 52330 1352 428 aa, chain - ## HITS:1 COG:lin2980 KEGG:ns NR:ns ## COG: lin2980 COG4806 # Protein_GI_number: 16802038 # Func_class: G Carbohydrate transport and metabolism # Function: L-rhamnose isomerase # Organism: Listeria innocua # 2 416 5 420 420 678 73.0 0 MTTITQKYEEAKEKYASIDVDTEAVLEKMADVKISMHVWQGDDVRGFLSEDELSGGISVT GNYPGVARSPQQLRQDLEKAFSLIPGKHKLNLHAIYLDTEERVDLNELEPKHFEPWVTWA KENGLGLDFNPTFFSHPMYRDGFTLAHPNPQVRDFWIEHGKRSRRIAEYFGRELGQVAVN NFWVPDGFKDNPVDRLTPRKRLMASLDEIFSEEIDPAYTVDAVESKLFGIGSEAYTVGSH EFYMGYGLTRNKLICLDAGHFHPTEVISNKLSSLSLFGEGMLLHVSRPVRWDSDHVVIMD DELQEIAKELVRNDLLGKTHVGLDFFDATINRVAAWVIGTRNTQKALMKAMLEPTNVLKE AELIGDFTTRLALTEELKDFPFADIWNYYCQENHVPIGLDWLTDVQEYEKVILPTRQLPT GKDSCRFS >gi|307679195|gb|GL457052.1| GENE 60 52327 - 53829 1554 500 aa, chain - ## HITS:1 COG:BS_yulC KEGG:ns NR:ns ## COG: BS_yulC COG1070 # Protein_GI_number: 16080172 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Bacillus subtilis # 17 492 3 476 485 519 53.0 1e-147 MTTINKVKKEQVEKRTYLAVDIGASSGRIMKSQRLANGQITIEEIHRFKNGFHQKDGYQR WDMASLVHELLLGLQKVKQLGIKECFIGIDTWGVDYCLLDQSGQLLDEPIAYRDGRTEAA VTNFSKGYSLEKLYQQTGIQVQPFNTIFQLFVEEKERLAAASQLLLIPDYLGYVFTGKAV IEATNASTTQLLNAGMKQWESELLDFLGIDETLFPTLVEPGTILGDLQTAAFPDYDLPNA TLITIASHDTASAILGTPGIGDDWAYISSGTWSLLGIETTVTTISAEAFQENYTNEWGAQ NTIRFLKNIMGMWLIQEVARHQNYQYSYAELAALAEKEPAFQQFIDVNDPRFLNPGNMIT ELQAYCRETQQTVPESPGELARCIYDNLALCYSVELEKLAQLTGIERKITTLHVVGGGSN NRLLNQLTADVANVTVKAGPGEATALGNLLMQMIATGELKDIPAARTCIQTSFPTEIYQA NPIDSTIKNRYQAFMKRSSL >gi|307679195|gb|GL457052.1| GENE 61 53959 - 54831 725 290 aa, chain + ## HITS:1 COG:PA3571 KEGG:ns NR:ns ## COG: PA3571 COG2207 # Protein_GI_number: 15598767 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Pseudomonas aeruginosa # 32 287 46 298 307 93 27.0 5e-19 MDYWEKADYSWSDDSKRHILTPSSKSRTLFYYIQEIGQFKASRPYYTERAHLPSYLIKFT LNGTGELRYRYHTYSLQRGDLFFIDCRDYQYYQATSEEPWEMDWIHFEGGNSGAFFQEFM KNGSPVFSTNQLPEDNPIHLIIQQLLQLQDLQHAQTDYQSSVLIHQLLNELLLQKYRQDF TYETIPSLVLEMKAYIDQHFKETISLEDLAQLFHLNKYQLNKEFSKYIGLPPIKYQISKK ISYSKDLLRYSNQTMKEIAVDVGLENYAYFSRLFKKRTGLTPSQYRKSGF >gi|307679195|gb|GL457052.1| GENE 62 54979 - 56274 1086 431 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020581|ref|YP_526408.1| ribosomal protein L16 [Saccharophagus degradans 2-40] # 7 427 6 426 435 422 48 1e-117 MALEAGIILFVVFAVLLVVGMPIGMSIAASSIATLLLVIPFEAAAFTSAQKMVSSLNSFS LVAIPFFIFSGVIMNNGGIAQKLVNFSMLFVGRVPGALAHTNVLGNALFGSISSSAIAAS TAIGGVLIPQQVNEGYDRKFATAVNIASAPTGMVIPPSTAFIMYSLVAGGASISSLFLGG YLVGSLWALGIMVVAYVIAKRHNYPTVAKAKKGEVSKVLREAVPSVLLIVIIIGGILTGL FTAIEASAIAVAYSLLISMFYYKTVKINDLPKMLKEAVLMSGTIMFLLATSSMMSFAMAF TGIPEAISTAILGIIDNKYLILLLVNVVLLFVGMFMDVGPAILIFTPIFLPIVMNVGVDP VHFGLFAIMNLCVGSITPPVGTGLYVGASVGGVKAEQMLKPLVPFYLVILAILLLITYVP ELVMWLPNLIS >gi|307679195|gb|GL457052.1| GENE 63 56310 - 56786 256 158 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020580|ref|YP_526407.1| ribosomal protein S3 [Saccharophagus degradans 2-40] # 1 148 1 150 164 103 35 3e-21 MKGFRKFLNRLLEILGSIILAAMVLVVLYQVFARTVLKNPSTLTEEFVRFALVWLAMLAS AYVVGKKGHLAVTLLSEKLQGKQKRFLEFIVQLLFLLFAGVIMIFGGWNGVVITLGQISP SLAIPMGYVYLAVPVAGVLMFIYSLMNLLELFTQSKDS >gi|307679195|gb|GL457052.1| GENE 64 56801 - 57811 586 336 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020579|ref|YP_526406.1| ribosomal protein L22 [Saccharophagus degradans 2-40] # 1 334 4 331 331 230 37 2e-59 FMKKRKVLFTAVMVLAGLQLLSGCGKTEASANDTVVLRYAYASNSQPVIDSMKKFGELVE EKTDGKVQIEYFPDGQLGGETELIELTQTGAIDFAKVSGSALESFSKDYSVFAIPYIFDN EKHFFKVMDNQALMQPVYDSTKKLGFVGLTYYDSGQRSFYMSKGPVTSPDDLKGKKIRVM QSETAIKMVELLGGSPVPMGSSEVYTSLQSNLINGAENNEFVLYTAGHGGVAKYYSYDEH TRVPDIVIMNEGTKERLTAKQEQAIEEAAKESTAFEKTVFKEAVEEEKKKAQAEYGVVFN QVDSEPFQKLVQPLHESFKNSSEHGELYQAIRQLAD >gi|307679195|gb|GL457052.1| GENE 65 57829 - 58935 1275 368 aa, chain - ## HITS:1 COG:STM1911 KEGG:ns NR:ns ## COG: STM1911 COG4225 # Protein_GI_number: 16765253 # Func_class: R General function prediction only # Function: Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins # Organism: Salmonella typhimurium LT2 # 1 367 11 378 379 454 56.0 1e-127 MIIKQEQFIPKDTVETTIDLLIRNLTTIKDNTGEFLLDFDGLKVDDKSWTIWNWPQGVGL YGIYKNYRNTKSEKALQVVNDWFEGRMQEGAPPKNVNTMAPLLTMAYLYEDTKDSKYIPY LEQWAEWVMEEMPRTNEGGLQHATYGPENKNQLWDDTLMMTVLPLAKIGKLLNRLDYLEE AKHQFLIHIKYLQDKKSGLWYHGWTFEGNHNYAEALWARGNCWITIAIPEIIEILELPKG DSLREFLLSTLNAQVAALAKYQDESGLWHTLINDSNSYLESSATAGFAYGILKAVHKKYI SSEYEEVANKAIAGLLNKIDETGEVQHVSVGTGMGDNLDFYRTIGMTAMPYGQSLTILCL TELLVSYC >gi|307679195|gb|GL457052.1| GENE 66 59165 - 59953 204 262 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 13 252 4 238 242 83 26 4e-15 MEFKMNDFQLDGKVALITGAVYGIGFEIAKSLAEAGATIVFNNLSPESVEQGLENYRAAG IEARGYVCDVTDEEQVQAMVAQIKEEVGSIDILVNNAGIIKRIPMVDMSAEEFRQVIDVD LNAPFIMAKAVIPDMIEKGHGKIINICSMMSELGRETVSAYAAAKGGLKMLTKNIASEYG QYNIQCNGIGPGYIETPQTAPLREPGHPFNEFILGRTPANRWGTPADLAGPAVFLASNAS DFVNGHILYVDGGILAYIGKQP >gi|307679195|gb|GL457052.1| GENE 67 59975 - 60814 1079 279 aa, chain - ## HITS:1 COG:YPO1725 KEGG:ns NR:ns ## COG: YPO1725 COG3717 # Protein_GI_number: 16121985 # Func_class: G Carbohydrate transport and metabolism # Function: 5-keto 4-deoxyuronate isomerase # Organism: Yersinia pestis # 16 279 13 278 278 317 55.0 1e-86 MQNMETLYTHSPADIRHYSTEQLRDEFLVEKVFIPGAISLTYTHNDRMIFGGVTPTTEEL EIILDKELGVDYFLERRELGVINIGGPGFIEIDGAKETMKKQDGYYIGKETKHVRFSSEN PDNPAKFYISCVPAHHKYPNVKISIDEITPMETGDPLTLNQRKIYQYIHPNVCESCQLQM GYTILEPGSAWNTMPCHTHERRMEAYVYFDMEEDTRIFHMMGKPDETKHLVMSNEQAAIS PSWSIHSGVGTSNYSFIWAMCGENITYTDMDMVAMDQLK >gi|307679195|gb|GL457052.1| GENE 68 60827 - 61834 1073 335 aa, chain - ## HITS:1 COG:TM0067 KEGG:ns NR:ns ## COG: TM0067 COG0524 # Protein_GI_number: 15642842 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Thermotoga maritima # 3 335 2 339 339 224 40.0 1e-58 MGKVVTLGEIMLRLSTPVGIRVAQTENFAVHYGGGEANVAISLANYGHQVTFASKVPDNS LGEAAKKHLSRYGVSTEFVRTGGTRLGTYYLETGTGERAASVVYDRAYSSFAQIEEMEWD LHELFSGVEIFHISGITAALSKTWQSMTVALVKAAKQAGCQVSFDINYRGKLWSQKEASV ALKSILPFVDICSAGVLDARYLLEIPEPEEELEDALTWYYRKMQERYPNIQVFYSTKRQV HSATDNELIGTLWYKGAYYTSKCHRLQPIVDRVGAGDAFAGGVLHGILAAYDPQTCIDFA TAASALKHTVHGDCNQFSQKEVLAFLATGSGKINR >gi|307679195|gb|GL457052.1| GENE 69 61839 - 62486 938 215 aa, chain - ## HITS:1 COG:SP0317 KEGG:ns NR:ns ## COG: SP0317 COG0800 # Protein_GI_number: 15900249 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-6-phosphogluconate aldolase # Organism: Streptococcus pneumoniae TIGR4 # 1 206 1 206 209 223 53.0 2e-58 MKRVSILQKLENAGVIAVVRGKTKEEALKASQAIVAGGMRGIELTFTVPQATEVIQELVA LYQENPDVVIGAGTVLDATTARLAIVAGAEYIVSPSFDEETAKICNLYQVPYLPGCMTIT EMKEALKSGADIIKLFPGSVYGPSVISAFKAPLPQLNIMPTGGVSLENMAEWFDAGVTAV GVGGNLLAPAATGDFEKVREVAQDYMEKFQAIKGV >gi|307679195|gb|GL457052.1| GENE 70 62647 - 63399 988 250 aa, chain - ## HITS:1 COG:TM0065 KEGG:ns NR:ns ## COG: TM0065 COG1414 # Protein_GI_number: 15642840 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Thermotoga maritima # 11 250 4 244 246 123 34.0 3e-28 MKETKPYGTVLLKAAKIMDCLSLQPDQTLQEIAKNTEMTASTAIKILETLTLIGYVQKDT NKTYRLGTKLIRYANQSVEQIDLAEIAVPYLENLQNTVDETIHLGILNNNEILYINKLEP KNQTIRMSSKVGITRPLYNSAMGKAVLAEFSEEQVQQYLDTQTLIPYTENTITNPLRLKK ELKQVQQTGVAYDDEEIEQDIFCSGVSLMKDGEIAGAFSVSMPKYRLTEENKTTINQALL ATKAAIEAKL >gi|307679195|gb|GL457052.1| GENE 71 63530 - 63997 525 155 aa, chain - ## HITS:1 COG:no KEGG:EF0421 NR:ns ## KEGG: EF0421 # Name: not_defined # Def: MerR family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 5 155 1 151 151 288 100.0 4e-77 MWSKMIQRLLNEENLLIGISELSEIAEVSPRQLRYWEEKGYISSIAKDANGPRKYRLHTV VKVHWIKRFLDEGYTLQSAVEKAEEQHRNVGMTKKIFSQMFHGISEVCPNYVAIDLGDFD EEQKLYVVFNETTEVSEYLLIPKDADVSDELKKRK >gi|307679195|gb|GL457052.1| GENE 72 64140 - 65615 1831 491 aa, chain + ## HITS:1 COG:lin2733 KEGG:ns NR:ns ## COG: lin2733 COG0477 # Protein_GI_number: 16801794 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 4 484 7 487 493 518 61.0 1e-146 MTSQQPVDIHGKPYNRSLLVGVLLIGTFCTILNQTLLTTALPTLMKEFDISASSVQWLTT GFLLVNGIMIPISAWLINKFSSKKLYITAMSTFLIGTIICFVAQDFGMLLTGRLVQAAGV GVSMPLLQTIMLSIFPPEKRGAAMGTTGIVIGLAPALGPTLSGWIIDSYTWRDLFGMVIP IVVLVLILASFLMKNVIQLSNPSIDVLSVILSTLGFGSLLYGFSSVGDKGWGSPQVYGFL IVGAIVLCLFTYRQLHLEQPFLELRVFKSKVFTVAAILSGVTNMAMIGAEMVLPLYIQNI RGESAFHSGLMLLPGALVMGLMMPVTGRIFDKIGARRLAITGMFILTAATLPFAFLTKAT PIIYIIVLYAIRMFGISMVMMPVTTSGMNALPMNLLSHGTAVNNTFRQVASSIGTAVLIS VLTNVTKDGLPASDLLKTAPLTYRDQATNATLNGYHAAFFVATIFGVLGLAITFFLNKKE AMPVKEVGAMK >gi|307679195|gb|GL457052.1| GENE 73 65615 - 66319 760 234 aa, chain + ## HITS:1 COG:no KEGG:EF0419 NR:ns ## KEGG: EF0419 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 234 1 234 234 430 99.0 1e-119 MIIFLLILCVLGFAYTNVFGRKVWHKFCMVIFGLGFLASLSLIVLNDKDHFGMTEVTQDK TFELKSSSSSKDGPNMLLYQPLGDGSEKVYLYNTPDKKKLQKTGTENVTNTVQKDAQKAT LVQKTTKWSYQESWAKTLFGLADNDNQFAKQENTFNIASDWLVLSADQAKKLGEYMEQHA ADIKKEGTETVGKKMMAAMMANPSMSQEEQAKLTEQYTKEFQQELIQKILSDMK >gi|307679195|gb|GL457052.1| GENE 74 66362 - 67483 761 373 aa, chain - ## HITS:1 COG:no KEGG:Sez_1592 NR:ns ## KEGG: Sez_1592 # Name: not_defined # Def: hypothetical protein # Organism: S.equi # Pathway: not_defined # 9 371 12 371 372 103 24.0 2e-20 MKKIVAGFLSLISIGIMLFVVKDKLIEEKKQSFVVQEETDFYVLSTQAIYSFMFSENDIK KHKRSRVDLPEIVPTGFSKGRLQSHYLLFSTGDLLSSTKDEFIVSVDFFKGELLKRKTEK YPYTGTGYSSNYFYTVQAERLYSFDTEGNPVSSYRFNESTTPVTQFSGTQNKLYVVASQE AKEKQLYENMLFIFKEGENLTLTDEIFLDTNPEYVYGFTSSVIVNNQIYLPITAHRNRVS YENVPDNRIMQMGLDAKNQRFIQLTENFPNLIYKSRTSEYLIIDHEPNALGKVGLSIVNL ATEESYFLNINGQLKTEELEESMIYSVNTTKDNQLLVLAGQTLLRYDLVTGNLLSETKVL EKEEQGIYIWVNH >gi|307679195|gb|GL457052.1| GENE 75 67553 - 67627 62 24 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKTVIGWLCRMDCRRKVSKLSRE >gi|307679195|gb|GL457052.1| GENE 76 67761 - 68990 275 409 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 [Flavobacteriales bacterium ALC-1] # 12 407 15 410 413 110 26 2e-23 MIANLFVSTFLSLKAHKLRVFLTMVGIIIGITSVVTISALGEGMKRQVVKASSAVNADVL KIHYTMSDGSSDNFMSYEEPDYTFSRVDLKKLQDIQGIESIYPQYGESMMGGGDNLFVPM DYFGAQANLSITSTKGQNDILYGRDFQPNDANTDAIVLNHDIFEAQIRLDDPSQLIGKAV SIGGYMYKVIGILAPKDLDSLGMNDDWATAMSSFVSRESYNKLAKTKAISGINIKVREGA DREAILGQAITILSENHPEVKGTFKENDQDQQLQQQMEEMVTGMTMFLMAITAISLLVGG IGVMNIMYVSVTERKREIGIRRAIGAKPRVILFQFLMEAAFITLIGGLIGVGCGYLLATV VGGYISITPIITPSIFAISTLVSVFTGIFFGIIPAIGASRMDPIKAIYN >gi|307679195|gb|GL457052.1| GENE 77 68987 - 69694 262 235 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 13 232 7 217 311 105 31 7e-22 MEANNTNQPLIELRDINKFYPVGKEKLHVLKELNLTIHQGEFILIMGKSGSGKTTLMNII GFLDRLTDGSYHFSGTDVSKLSENKKSAFRNEYLGFIFQQFFLINSLNVRQNVQLPCVYE GKKSRAEKKAIAEKYLKIVGLETKAKSKVTELSGGQQQRVAIARSLVNDPLLIMADEPTG ALDSETGTEIMELLKELNEQGKTIVMVTHDEDMKKYASRVIHMKDGRFLEEEVIR >gi|307679195|gb|GL457052.1| GENE 78 69707 - 70861 1380 384 aa, chain - ## HITS:1 COG:BS_yknX KEGG:ns NR:ns ## COG: BS_yknX COG0845 # Protein_GI_number: 16078499 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Bacillus subtilis # 73 364 76 377 377 76 28.0 8e-14 MGAVAVIAVGGIVTVNALNKNAQQVAVKQAPKDDWGIDYFDVPDLQQIYINGVIQPEQME AFARDQKITKDPEIKVKNGDVVDAGTELFTYEDEAVTKEIEAQQNSLAKLETKRANIYNK WNRAIDKFNKTKEEDRTMSGDDLNEQYQTEVDAVDEEITFTNETLADLGAKQYISTKANF KGRVSIPEVKDANSPILRLTSEDLYLAGKVNEKDLTKISVGQKAKLTSVSNNVVVDGSIS YIDDNPPEGNSDAASGNPEGGTTMSSYSVKIALANLDKVKNGYHMQATIDLGDLGAIELP KKAIQKEGEQAYVLVNDFGTIIRRDVQVGQENGDKMAIESGLESADRVVISSKKPVKVGD IVESDAAIASDESATNESMTDASK >gi|307679195|gb|GL457052.1| GENE 79 71206 - 71844 482 212 aa, chain + ## HITS:1 COG:YLR290c KEGG:ns NR:ns ## COG: YLR290c COG0702 # Protein_GI_number: 6323321 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Saccharomyces cerevisiae # 2 89 4 95 277 68 36.0 1e-11 MKVIIFGGSGFLGQQIAKILVQRQHQVISVSRHGKPATLSASWSHQVQWVCSDVTRDTNW QEQVQRADWVIDTVGILFENPRKKKTYQRLILTPVKKISSFLAQQKKPAKFLFISANTVP FPLRKYMDAKLAAEELIHQEVAEAVIFYPSLLVGQERTGTILFSKCIYFFKKIPFLKNLF IGYDPVPVAEMAQEIVHVLEGGNSIYTHRRTR >gi|307679195|gb|GL457052.1| GENE 80 71923 - 73038 1032 371 aa, chain + ## HITS:1 COG:L125707 KEGG:ns NR:ns ## COG: L125707 COG0665 # Protein_GI_number: 15673855 # Func_class: E Amino acid transport and metabolism # Function: Glycine/D-amino acid oxidases (deaminating) # Organism: Lactococcus lactis # 1 365 2 366 373 399 56.0 1e-111 MKKIAIIGGGIIGMTLANYLDPQKFDITVYDEGLGQATKASAGIISPWLSKRRNKKWYQL AREGAALFPKLVKDFQLTEDIYRQSGTVILRPAAALADLAHLAEERKQTAPEIGEITMLS AVQTAKFLPLLKETPSLFISGGGRLDGPAYLNHLQKRAEAKGVTFCSQRAHFRQLNQGWE IVTNSEKKSVDFLALTPGPHLKELLTTLNLSVDIRPQKGQLLVFETPFTNSQQWPVAMLD GEADLIPFNQGKILLGATHENEQAWDLEETVSAFQQLTSGTAPFLKEADQLFKQPMHYRV GTRAYTSDFAPFFGPLPEMPHLVVASGLGSSGLTTGPFISYQLAEYFNTGAFKGELYQKP LSQYVKNNPSL Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:12:20 2011 Seq name: gi|307679194|gb|GL457053.1| Enterococcus faecalis TX2141 genomic scaffold Scfld225, whole genome shotgun sequence Length of sequence - 12177 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 5, operones - 3 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 119 - 192 86.8 # Pro TGG 0 0 - Term 191 - 223 4.2 1 1 Tu 1 . - CDS 238 - 1086 595 ## COG1737 Transcriptional regulators - Prom 1116 - 1175 6.8 + Prom 965 - 1024 6.5 2 2 Op 1 . + CDS 1241 - 2548 1356 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 3 2 Op 2 . + CDS 2568 - 3755 1197 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases + Term 3812 - 3862 0.5 + Prom 3862 - 3921 7.4 4 3 Op 1 3/0.000 + CDS 3959 - 4426 358 ## PROTEIN SUPPORTED gi|163764774|ref|ZP_02171828.1| ribosomal protein L14 5 3 Op 2 . + CDS 4429 - 6924 2491 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 6977 - 7030 6.8 + Prom 7014 - 7073 5.2 6 4 Tu 1 . + CDS 7139 - 8173 739 ## COG1289 Predicted membrane protein + Term 8211 - 8257 7.4 + Prom 8253 - 8312 3.3 7 5 Op 1 13/0.000 + CDS 8355 - 9275 1236 ## COG0826 Collagenase and related proteases 8 5 Op 2 . + CDS 9303 - 10550 1423 ## COG0826 Collagenase and related proteases 9 5 Op 3 . + CDS 10574 - 12136 1481 ## COG2508 Regulator of polyketide synthase expression Predicted protein(s) >gi|307679194|gb|GL457053.1| GENE 1 238 - 1086 595 282 aa, chain - ## HITS:1 COG:BS_ybbH KEGG:ns NR:ns ## COG: BS_ybbH COG1737 # Protein_GI_number: 16077237 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 10 257 13 255 283 96 28.0 5e-20 MNLIECLEQKERYTYNEGLIIDFILSHTERVLHMSIYELAEATNSSTSTIVRLCKKTETS GFKEFKIRLSRDLEIHYQAIRNVDANMPFLAQDSDLLIAKKIAQLTTETVQSTQQLLTEA MLNKSIDLLLTAENILAVGVSNSYIRLTDFQTKLLRIQLFIHLIPYQAEQFYLAINATKN DVAILVSYSGNTAEIVNEARIFAEGGTPIIAITSDLNSQLAKYATVILPIPNVEHADFKV STFSSQLAIEYILNVLYSCIFSRNFDKNYTSQKNTPTSILKF >gi|307679194|gb|GL457053.1| GENE 2 1241 - 2548 1356 435 aa, chain + ## HITS:1 COG:SPy2050 KEGG:ns NR:ns ## COG: SPy2050 COG1455 # Protein_GI_number: 15675820 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Streptococcus pyogenes M1 GAS # 10 430 7 432 434 271 34.0 2e-72 MDKLTNWVEQAVVPKVSRITSLRYFQALRNGFFAIMPLTIIGSIFMLITDFPVAGYGDFM DGIFGAGWADMISPAYRATFNMMGIIFAGTMSYKLAESYEMDRLTSLILGIVAYVVVLPK TVTTESGEVVTKVLSFDWLGTQGVITAIIMSILSVELTRFCIKKKLVIKMPESVPSMVSQ AFSALIPGIFVVAVALLINGIGLSFADSFPQLIYAVIQAPLQGLIGTPFAIIIVAGLNGL FWWFGIHPTVINSMLYPILYANADKNQSLAELGQLTAQSGNFGTVQMLDQFATIGGAGCT IGLAIAMAIVGHSSRMKAMSKISFVPAFFNINEPLIFGLPVIFNPLLLIPIAVAPIVSVL IAFLSMKIGFMPMFTNIQAPWATPFLFSGFLVGKWQGAVTQVLAVAASVVIYYPFVKALD RQYQKEEAHEVPETL >gi|307679194|gb|GL457053.1| GENE 3 2568 - 3755 1197 395 aa, chain + ## HITS:1 COG:mll0856 KEGG:ns NR:ns ## COG: mll0856 COG0626 # Protein_GI_number: 13470999 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Mesorhizobium loti # 24 388 31 393 395 260 38.0 3e-69 MHVENDKNICCEVEKGMEKMYHPMVPELVQTSSFYFPTYEEFMAASIDEKNNYVYTRGTN PTTEILEKKIARLERGEKCKVFASGMGAISATLFTLLQQGDHVLMVNTIYGESVSFVQYL EKFGVSLTKVDVAETEELFQFVQENTKVIYFESPSSQKFELLDLEKITALAQKIGAYTVI DNTWASPLFQHPLCHNVDLVIHSCSKYIGGHSDIVAGAVIGKAALVDQIFEHGHQALGAV NSPFNSWLALRGIRTMPVRLAHQSQAIQTVLLALQKDPRISRLYHPFVGNQQQQALAEKY LTGYGSLFAIDLKDTDFERLKTFVNALTLVTIGVSWGGFESLALPVFKGNNLAAVQKRGL SPAHIRMYVGLEEPTSIIEDIQQALDQAYGEESLL >gi|307679194|gb|GL457053.1| GENE 4 3959 - 4426 358 155 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764774|ref|ZP_02171828.1| ribosomal protein L14 [Bacillus selenitireducens MLS10] # 4 154 2 154 158 142 47 1e-33 MSNQNTSDLIEAYLKKILEESNKIEIRRAEMANLFNCVPSQINYVINTRFTIQRGYAVES KRGGGGYIRIVKVQISDNDQLLKQMDQLIGATLTEKDALTFIQTLYEEEVITKKEGNLML AALSKSTLNGLGNHEDFLRAQIMRSFLERLSYEEE >gi|307679194|gb|GL457053.1| GENE 5 4429 - 6924 2491 831 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 5 810 6 806 815 964 60 0.0 MDELFTESAKAVLAIAQEEAKYFRHQSVGSEHLLLALVLEPNGIAGKTLRQLNTDTEDIR EEIEHLSGYGTMQSPMGNNNLYLPYSPRAKQIFAYAGDEAKRLGAQKIGTEHLLLGLLRD EEILASRILVNLGLSLSKMRQLLLKKMGVSEPNGAQRRRNGQSKNAPQGTPTLDSLARDL TKLAREQSLDPVVGRGTEVRRLIQILSRRTKNNPVLVGEPGVGKTAIAEGLAQKIVNREV PEDMQGKRLMMLDMGALVAGTKYRGEFEDRLKKVVDEIYQDGQVILFIDELHTLIGAGGA EGAIDASNILKPALARGELQTIGATTLDEYQKYIEKDAALERRFARIQVAEPTPEEAEEI LKGLRSRYENHHGVEITDEALHAAVQLSIRYLNDRQLPDKAIDLMDESAAKVRLDKADQP SEINELRTEISQLITEKEEAIQNQSFESAARIRQKEKQVMEKLEELIAVKEKSLSGYSTQ VTEEDVAGVVSQWTGVPLQQLEKKESERLMELETILHQRVVGQNEAVEAVSRAIRRARSG LKDPARPIGSFMFLGPTGVGKTELAKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSP PGYVGYEEGGQLTEKIRQRPYSVILLDEVEKAHPDVFNILLQVLDDGHLTDAKGRKVDFR NTILIMTSNLGATAIREEKHVGFNVKDISKNHELMQKRIMEELKKAFRPEFLNRIDETVV FHSLKQEEIHEIVKIMSQSVVKRMAEQEVKVKITPAAIEVIGKVGFDPEYGARPIRRALQ KEVEDRLSEALLSGQIQLGDKVTLGASKGKITLNVRAPKAPKTEAKELQTV >gi|307679194|gb|GL457053.1| GENE 6 7139 - 8173 739 344 aa, chain + ## HITS:1 COG:Cj0557c KEGG:ns NR:ns ## COG: Cj0557c COG1289 # Protein_GI_number: 15791918 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Campylobacter jejuni # 20 328 29 337 361 98 27.0 2e-20 MEQSFFRELLHYQRPKDNPFRLVFAGLVMFSILFLGYINHQLLISSFGSLGIFTFLYYQP LPLKQLMTRLSVVGSYLFLGNLLGMLSTHIAWLIPIVVALVGFGGRFFFEVYDISKPGAF FGVMVTAMGASTSIPLAKIPFMSGCMLLGIGFSILFALVLHFTEKEISAPLAKRSLRERI YRHPEAPLDSIYYSFVLFFAVYISESLHLQNPYWLVVSCASILQGDNLRAIKQRNIQRIF GTTIGLVISAFLLNLALTTFESIVVITILFVTVEYFIRRNYGLAQFFTTPMALMLSLLVR QQYVITLIQFRFLGIVLGSLLGLAAAWLFTIVVTFYERKYHLNE >gi|307679194|gb|GL457053.1| GENE 7 8355 - 9275 1236 306 aa, chain + ## HITS:1 COG:L54059 KEGG:ns NR:ns ## COG: L54059 COG0826 # Protein_GI_number: 15673973 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Lactococcus lactis # 1 306 1 307 307 359 56.0 3e-99 MIELIATAESVEQAVELLAAGVDTLYIGEETFGLRLPVSFTRDEQREIVKRAHEMGKQVL VAVNGIMHPEKMKLVPEYLTFLKEINVDKITLGDPGIVFIMQRDGLEIPYVYDGETLVTS SRQINFWSKRGAIGAVLAREVPFEEMVAMEENLAVPAEILVYGATCIHQSKRPLIQNYYN YTKNDKGVTKDEGLFISEPKKPETHYSIYEDSHGTHIFANNDVNLMNELTNLYDHHYRTW KLDGLYTPGENFVAIARLFAEAKAALEAGTWSEDQAAHATAEIEKLHPTGRGLDNGFFDL SADAIK >gi|307679194|gb|GL457053.1| GENE 8 9303 - 10550 1423 415 aa, chain + ## HITS:1 COG:SP1429 KEGG:ns NR:ns ## COG: SP1429 COG0826 # Protein_GI_number: 15901282 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Streptococcus pneumoniae TIGR4 # 7 415 3 410 428 631 74.0 0 MKVMTERTLKRPEVLAPAGTLEKLKVAIRYGADAVYIGGNAYGLRSRAGNFTPEEMAEGV AFAREHNAKVYVAANMVTHEGNQEGAGAFFRELRDIGISAVIVSDPALIEICATEAPGLP IHLSTQASATNYETLEFWKNEGLERVVLAREVSMEEVAAIRENTDIEIEAFIHGAMCISY SGRCTLSNHMSMRDANRGGCSQSCRWKYELFDMPFGTERRSKTSEGEVEEEFSMSAVDMS MIEHIPELIENGVDSFKIEGRMKSIHYVSTVANVYKKAVDSYMEDPENYVCQQEWIDELW KVAQRELATGFYYNTPSENEQLFGERRKIPQYKFVGEVIAYNEKTQVATIRQRNLFSVGD EIEFYGPGFTHFHQTVKEMYNEDGEAIDRAPNPMMLLTMEVTQPVAVGDMIRKKK >gi|307679194|gb|GL457053.1| GENE 9 10574 - 12136 1481 520 aa, chain + ## HITS:1 COG:lin0472 KEGG:ns NR:ns ## COG: lin0472 COG2508 # Protein_GI_number: 16799548 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Listeria innocua # 1 517 1 524 531 323 35.0 6e-88 MSVRVNDLLKLPSLREATVLSGKNQLDTSVASLSFLEVSDMSLFSEKLHKTNEYHAGEIL IGSFCAIRHDVVKQCETIRHLHELGEVGLILYYVGIIVPKVAEEVIQLADSLGFILIQMP KNDPTLRYNEVIYEVMKLLVNKNKMASFATDLLEKVSLLPEQNRSVEMTLKILSDFLKVN IALTTYTNEIISTINWPRSTKLPLTKLLYQSQEKVALGETTYFITSQKLPQKDGQTLKLY FIREEEQLTSFEMNQAVEVVQMALNLWGKNYDEVSEYALVQAIINDESDKMYQLAKKLMI DISSVETMWLLPIWQQGQEIHAIQQDLKDFLRYYYQTTIVQQTENYLIVLLGNYLHKQPE ATISKEYLQATDYQDYLGEIILCPKVRNTTEVRVSYQTANQVAPFLKRVYPQRKVLSIAE IRTVQQMMTCLQAGEEAIQQRLAVIQPLLKESEQLMTLGTFLLDASSDFKECGERLFVHK NTVKYRISKINEALGYDMTNAAEAYEVYLAMILYRLVTNE Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:13:35 2011 Seq name: gi|307679193|gb|GL457054.1| Enterococcus faecalis TX2141 genomic scaffold Scfld250, whole genome shotgun sequence Length of sequence - 229644 bp Number of predicted genes - 233, with homology - 225 Number of transcription units - 107, operones - 60 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 108 - 1322 1332 ## COG4468 Galactose-1-phosphate uridyltransferase 2 1 Op 2 30/0.000 + CDS 1394 - 3154 2058 ## COG2812 DNA polymerase III, gamma/tau subunits 3 1 Op 3 . + CDS 3175 - 3489 636 ## COG0718 Uncharacterized protein conserved in bacteria + Term 3512 - 3573 19.0 + Prom 3571 - 3630 2.8 4 2 Op 1 1/0.290 + CDS 3824 - 4354 583 ## COG4732 Predicted membrane protein 5 2 Op 2 6/0.000 + CDS 4338 - 5156 776 ## COG2145 Hydroxyethylthiazole kinase, sugar kinase family 6 2 Op 3 11/0.000 + CDS 5153 - 5788 586 ## COG0352 Thiamine monophosphate synthase 7 2 Op 4 . + CDS 5785 - 6615 1042 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase + Term 6621 - 6668 14.2 - Term 6607 - 6658 17.5 8 3 Tu 1 . - CDS 6709 - 7065 359 ## COG1733 Predicted transcriptional regulators - Prom 7113 - 7172 7.3 + Prom 7061 - 7120 2.7 9 4 Tu 1 . + CDS 7210 - 8400 1352 ## COG2814 Arabinose efflux permease + Term 8406 - 8466 12.3 - Term 8402 - 8444 2.3 10 5 Tu 1 . - CDS 8451 - 9812 1267 ## COG0477 Permeases of the major facilitator superfamily - Prom 9861 - 9920 5.7 - Term 9836 - 9888 10.0 11 6 Tu 1 . - CDS 9976 - 10761 726 ## EF2771 hypothetical protein - Prom 10831 - 10890 6.6 + Prom 10872 - 10931 6.7 12 7 Op 1 4/0.065 + CDS 11136 - 11699 651 ## COG4721 Predicted membrane protein 13 7 Op 2 . + CDS 11696 - 13054 992 ## COG1122 ABC-type cobalt transport system, ATPase component 14 7 Op 3 . + CDS 13045 - 13698 475 ## EF2768 hypothetical protein 15 7 Op 4 . + CDS 13710 - 14372 831 ## COG0819 Putative transcription activator + Term 14381 - 14424 5.2 + Prom 14417 - 14476 4.4 16 8 Tu 1 . + CDS 14548 - 15144 583 ## COG0353 Recombinational DNA repair protein (RecF pathway) + Prom 15266 - 15325 4.5 17 9 Op 1 4/0.065 + CDS 15353 - 15991 827 ## COG0125 Thymidylate kinase 18 9 Op 2 2/0.194 + CDS 16011 - 16340 511 ## COG3870 Uncharacterized protein conserved in bacteria 19 9 Op 3 7/0.000 + CDS 16342 - 17292 889 ## COG0470 ATPase involved in DNA replication 20 9 Op 4 5/0.000 + CDS 17409 - 18248 965 ## COG1774 Uncharacterized homolog of PSP1 21 9 Op 5 2/0.194 + CDS 18241 - 18588 399 ## COG4467 Uncharacterized protein conserved in bacteria + Term 18614 - 18674 17.5 + Prom 18598 - 18657 5.2 22 10 Op 1 . + CDS 18700 - 19572 827 ## COG0313 Predicted methyltransferases 23 10 Op 2 4/0.065 + CDS 19587 - 20249 213 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 24 10 Op 3 . + CDS 20233 - 20991 685 ## COG0390 ABC-type uncharacterized transport system, permease component + Term 20999 - 21049 9.1 + Prom 21000 - 21059 2.5 25 11 Tu 1 . + CDS 21117 - 22235 1280 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair - Term 22219 - 22275 14.3 26 12 Op 1 12/0.000 - CDS 22280 - 22876 522 ## COG0602 Organic radical activating enzymes 27 12 Op 2 . - CDS 22909 - 25092 1878 ## COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase - Prom 25189 - 25248 10.5 + Prom 25295 - 25354 7.7 28 13 Op 1 36/0.000 + CDS 25498 - 26265 290 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 29 13 Op 2 . + CDS 26255 - 28351 1618 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Term 28356 - 28399 9.4 + Prom 28462 - 28521 11.1 30 14 Op 1 . + CDS 28555 - 28704 145 ## EF2750 hypothetical protein 31 14 Op 2 6/0.000 + CDS 28719 - 30239 1750 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins 32 14 Op 3 7/0.000 + CDS 30236 - 31441 1245 ## COG1696 Predicted membrane protein involved in D-alanine export 33 14 Op 4 6/0.000 + CDS 31474 - 31710 491 ## COG0236 Acyl carrier protein + Prom 31749 - 31808 3.1 34 14 Op 5 . + CDS 31845 - 32984 1311 ## COG3966 Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) + Term 33045 - 33104 2.0 + Prom 33112 - 33171 10.8 35 15 Op 1 . + CDS 33198 - 34280 1325 ## COG1363 Cellulase M and related proteins 36 15 Op 2 . + CDS 34301 - 35092 779 ## EF2743 hypothetical protein + Term 35097 - 35151 8.3 + Prom 35153 - 35212 3.0 37 16 Op 1 2/0.194 + CDS 35238 - 35978 1064 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III 38 16 Op 2 . + CDS 36011 - 37015 1194 ## COG0095 Lipoate-protein ligase A + Term 37022 - 37056 5.3 + Prom 37549 - 37608 5.7 39 17 Tu 1 . + CDS 37628 - 38317 799 ## COG4122 Predicted O-methyltransferase + Term 38336 - 38392 17.5 + Prom 38474 - 38533 10.7 40 18 Op 1 2/0.194 + CDS 38558 - 39121 711 ## COG0450 Peroxiredoxin + Term 39147 - 39195 8.5 41 18 Op 2 . + CDS 39218 - 40900 1918 ## COG0492 Thioredoxin reductase + Term 40950 - 40994 12.5 - Term 40936 - 40982 12.1 42 19 Tu 1 . - CDS 41000 - 41590 233 ## gi|256616760|ref|ZP_05473606.1| predicted protein - Prom 41610 - 41669 3.2 - Term 41632 - 41691 12.6 43 20 Op 1 . - CDS 41711 - 42244 540 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases 44 20 Op 2 . - CDS 42278 - 43033 818 ## COG0708 Exonuclease III - Prom 43114 - 43173 7.8 45 21 Op 1 . + CDS 43240 - 44154 937 ## COG0673 Predicted dehydrogenases and related proteins 46 21 Op 2 . + CDS 44226 - 45128 1348 ## COG0812 UDP-N-acetylmuramate dehydrogenase + Term 45308 - 45360 -0.0 + Prom 45820 - 45879 12.4 47 22 Op 1 . + CDS 45911 - 46441 378 ## gi|315032582|gb|EFT44514.1| hypothetical protein HMPREF9500_01525 48 22 Op 2 . + CDS 46432 - 46656 92 ## MGAS10270_Spy1771 hypothetical protein 49 22 Op 3 . + CDS 46680 - 47033 117 ## gi|315162104|gb|EFU06121.1| hypothetical protein HMPREF9513_01405 + Term 47037 - 47087 9.0 50 23 Tu 1 . - CDS 47111 - 47749 794 ## COG0517 FOG: CBS domain - Prom 47802 - 47861 7.3 51 24 Tu 1 . - CDS 47962 - 48084 69 ## - Prom 48143 - 48202 3.9 + Prom 47829 - 47888 6.1 52 25 Op 1 . + CDS 48035 - 48187 267 ## PROTEIN SUPPORTED gi|29377208|ref|NP_816362.1| ribosomal protein L33 53 25 Op 2 . + CDS 48208 - 48378 316 ## EF2730 preprotein translocase, SecE subunit + Term 48424 - 48464 1.1 + Prom 48423 - 48482 7.4 54 26 Tu 1 . + CDS 48503 - 49048 766 ## COG0250 Transcription antiterminator + Term 49095 - 49146 8.2 + Prom 49089 - 49148 3.8 55 27 Tu 1 . + CDS 49168 - 50046 978 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold + Term 50053 - 50097 12.4 - Term 50030 - 50093 21.1 56 28 Tu 1 . - CDS 50139 - 50861 383 ## EF2727 phosphosugar-binding transcriptional regulator, putative - Prom 50908 - 50967 13.9 + Prom 50641 - 50700 5.6 57 29 Op 1 . + CDS 50939 - 52567 1709 ## COG4166 ABC-type oligopeptide transport system, periplasmic component 58 29 Op 2 . + CDS 52581 - 53684 987 ## COG1363 Cellulase M and related proteins 59 29 Op 3 . + CDS 53681 - 54526 942 ## COG2362 D-aminopeptidase + Term 54531 - 54587 15.0 - Term 54517 - 54575 4.2 60 30 Op 1 9/0.000 - CDS 54591 - 55463 1215 ## COG1760 L-serine deaminase 61 30 Op 2 . - CDS 55486 - 56154 664 ## COG1760 L-serine deaminase - Prom 56389 - 56448 4.4 + Prom 56261 - 56320 5.2 62 31 Tu 1 . + CDS 56532 - 58028 1552 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 63 32 Op 1 55/0.000 + CDS 58151 - 58573 679 ## PROTEIN SUPPORTED gi|29377197|ref|NP_816351.1| ribosomal protein L11 + Prom 58602 - 58661 2.7 64 32 Op 2 43/0.000 + CDS 58685 - 59374 1156 ## PROTEIN SUPPORTED gi|29377196|ref|NP_816350.1| 50S ribosomal protein L1 + Term 59405 - 59450 10.0 65 33 Op 1 47/0.000 + CDS 59697 - 60197 787 ## PROTEIN SUPPORTED gi|29377195|ref|NP_816349.1| 50S ribosomal protein L10 66 33 Op 2 . + CDS 60260 - 60628 571 ## PROTEIN SUPPORTED gi|29377194|ref|NP_816348.1| ribosomal protein L7/L12 + Term 60651 - 60689 7.0 67 34 Tu 1 . - CDS 60681 - 60782 110 ## - Prom 60863 - 60922 7.7 68 35 Tu 1 . - CDS 60982 - 61812 666 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 61882 - 61941 5.9 + Prom 61866 - 61925 8.7 69 36 Op 1 . + CDS 61961 - 63460 1618 ## COG0531 Amino acid transporters 70 36 Op 2 . + CDS 63438 - 66515 3332 ## COG3250 Beta-galactosidase/beta-glucuronidase + Term 66522 - 66570 5.1 + Prom 66561 - 66620 6.9 71 37 Tu 1 . + CDS 66696 - 66944 441 ## COG2261 Predicted membrane protein + Term 67014 - 67067 9.3 72 38 Tu 1 . - CDS 67151 - 68521 1603 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase - Prom 68558 - 68617 10.1 + Prom 68408 - 68467 7.8 73 39 Op 1 . + CDS 68653 - 69453 924 ## COG2137 Uncharacterized protein conserved in bacteria 74 39 Op 2 . + CDS 69443 - 70627 1228 ## COG1194 A/G-specific DNA glycosylase + Term 70628 - 70681 8.6 + Prom 70682 - 70741 5.1 75 40 Op 1 . + CDS 70808 - 71932 1068 ## COG1316 Transcriptional regulator + Prom 72019 - 72078 10.0 76 40 Op 2 . + CDS 72124 - 72555 533 ## EF2702 hypothetical protein + Term 72559 - 72608 15.1 - Term 72547 - 72595 7.3 77 41 Op 1 . - CDS 72600 - 73124 764 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 78 41 Op 2 . - CDS 73141 - 73962 910 ## COG1051 ADP-ribose pyrophosphatase - Prom 74038 - 74097 13.6 79 42 Op 1 4/0.065 - CDS 74152 - 75339 1606 ## COG3853 Uncharacterized protein involved in tellurite resistance 80 42 Op 2 . - CDS 75359 - 76039 771 ## COG4915 5-bromo-4-chloroindolyl phosphate hydrolysis protein - Prom 76271 - 76330 6.1 + Prom 76281 - 76340 9.4 81 43 Op 1 . + CDS 76442 - 77026 563 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 82 43 Op 2 . + CDS 77023 - 77319 375 ## EF2695 hypothetical protein 83 43 Op 3 . + CDS 77335 - 78030 1010 ## COG0775 Nucleoside phosphorylase + Term 78034 - 78098 23.9 - Term 78027 - 78079 18.0 84 44 Op 1 6/0.000 - CDS 78097 - 78363 283 ## COG2827 Predicted endonuclease containing a URI domain 85 44 Op 2 . - CDS 78353 - 79087 854 ## COG4123 Predicted O-methyltransferase - Prom 79120 - 79179 6.5 + Prom 79082 - 79141 5.9 86 45 Tu 1 . + CDS 79276 - 79902 831 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase + Term 79933 - 79980 4.0 + Prom 80002 - 80061 7.8 87 46 Op 1 28/0.000 + CDS 80086 - 81222 983 ## COG0420 DNA repair exonuclease 88 46 Op 2 1/0.290 + CDS 81227 - 84364 3472 ## COG0419 ATPase involved in DNA repair 89 46 Op 3 . + CDS 84384 - 87581 3509 ## COG0553 Superfamily II DNA/RNA helicases, SNF2 family 90 46 Op 4 . + CDS 87631 - 88554 889 ## EF2687 hypothetical protein + Term 88599 - 88661 23.0 + Prom 88665 - 88724 4.2 91 47 Op 1 . + CDS 88744 - 90915 1979 ## COG4886 Leucine-rich repeat (LRR) protein 92 47 Op 2 . + CDS 90952 - 91287 152 ## EF2685 cell wall surface anchor family protein 93 47 Op 3 . + CDS 91289 - 92071 948 ## EF2684 hypothetical protein 94 47 Op 4 . + CDS 92111 - 92887 1056 ## EF2683 hypothetical protein + Term 92901 - 92945 3.0 95 47 Op 5 . + CDS 92962 - 93909 954 ## EF2682 hypothetical protein + Term 93915 - 93951 7.3 - Term 93903 - 93939 3.5 96 48 Tu 1 . - CDS 93946 - 94659 563 ## COG1011 Predicted hydrolase (HAD superfamily) - Prom 94791 - 94850 6.5 + Prom 94659 - 94718 7.3 97 49 Op 1 . + CDS 94835 - 94921 97 ## 98 49 Op 2 . + CDS 94987 - 96702 246 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 + Term 96708 - 96743 4.1 - Term 96686 - 96740 14.6 99 50 Tu 1 . - CDS 96746 - 97756 1076 ## COG0180 Tryptophanyl-tRNA synthetase - Prom 97945 - 98004 10.7 + Prom 97931 - 97990 7.0 100 51 Tu 1 . + CDS 98116 - 98514 421 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family + Term 98528 - 98573 3.4 + Prom 98759 - 98818 5.2 101 52 Tu 1 3/0.097 + CDS 98857 - 99519 894 ## COG4862 Negative regulator of genetic competence, sporulation and motility + Term 99520 - 99567 5.2 + Prom 99524 - 99583 3.8 102 53 Op 1 7/0.000 + CDS 99608 - 100786 667 ## COG4469 Competence protein 103 53 Op 2 . + CDS 100834 - 102645 2206 ## COG1164 Oligoendopeptidase F + Term 102674 - 102737 21.3 + Prom 102754 - 102813 7.0 104 54 Tu 1 . + CDS 102836 - 103555 554 ## COG1396 Predicted transcriptional regulators - Term 103797 - 103833 2.2 105 55 Op 1 1/0.290 - CDS 103838 - 104497 748 ## COG2761 Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis 106 55 Op 2 . - CDS 104561 - 105139 672 ## COG4116 Uncharacterized protein conserved in bacteria - Prom 105163 - 105222 3.6 + Prom 105065 - 105124 6.5 107 56 Op 1 6/0.000 + CDS 105336 - 106010 669 ## COG2357 Uncharacterized protein conserved in bacteria 108 56 Op 2 7/0.000 + CDS 106023 - 106820 721 ## COG0061 Predicted sugar kinase 109 56 Op 3 1/0.290 + CDS 106828 - 107721 261 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit 110 56 Op 4 . + CDS 107752 - 109113 1575 ## COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain) + Term 109180 - 109226 7.2 - Term 109167 - 109212 10.0 111 57 Tu 1 . - CDS 109231 - 109860 841 ## COG3142 Uncharacterized protein involved in copper resistance + Prom 109901 - 109960 3.7 112 58 Tu 1 . + CDS 109990 - 110835 711 ## COG0500 SAM-dependent methyltransferases + Term 111033 - 111072 0.3 + Prom 110995 - 111054 12.7 113 59 Tu 1 . + CDS 111149 - 111655 567 ## COG0219 Predicted rRNA methylase (SpoU class) + Term 111674 - 111717 2.0 + Prom 111661 - 111720 4.8 114 60 Op 1 1/0.290 + CDS 111872 - 112516 762 ## COG0406 Fructose-2,6-bisphosphatase 115 60 Op 2 . + CDS 112543 - 115152 2972 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member + Term 115163 - 115207 13.2 - Term 115145 - 115201 13.1 116 61 Tu 1 . - CDS 115219 - 116178 798 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase - Prom 116201 - 116260 6.1 + Prom 116314 - 116373 5.2 117 62 Op 1 . + CDS 116441 - 116947 496 ## COG4708 Predicted membrane protein + Term 117003 - 117048 -0.4 + Prom 117083 - 117142 7.2 118 62 Op 2 . + CDS 117185 - 118390 1384 ## COG2348 Uncharacterized protein involved in methicillin resistance + Term 118399 - 118450 17.1 - Term 118387 - 118438 17.1 119 63 Op 1 3/0.097 - CDS 118446 - 119081 708 ## COG4684 Predicted membrane protein 120 63 Op 2 3/0.097 - CDS 119085 - 119639 577 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase 121 63 Op 3 . - CDS 119636 - 120409 901 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase 122 63 Op 4 . - CDS 120425 - 121417 1398 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases - Prom 121506 - 121565 5.5 + Prom 121545 - 121604 7.3 123 64 Op 1 4/0.065 + CDS 121681 - 122223 664 ## COG1396 Predicted transcriptional regulators 124 64 Op 2 30/0.000 + CDS 122249 - 123334 1239 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components 125 64 Op 3 36/0.000 + CDS 123353 - 124159 791 ## COG1176 ABC-type spermidine/putrescine transport system, permease component I 126 64 Op 4 25/0.000 + CDS 124159 - 124995 878 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 127 64 Op 5 . + CDS 124992 - 126065 1137 ## COG0687 Spermidine/putrescine-binding periplasmic protein + Term 126093 - 126144 17.3 + Prom 126110 - 126169 10.2 128 65 Tu 1 . + CDS 126237 - 126920 325 ## EF2648 hypothetical protein + Prom 126944 - 127003 6.2 129 66 Op 1 6/0.000 + CDS 127030 - 128322 1424 ## COG2610 H+/gluconate symporter and related permeases 130 66 Op 2 1/0.290 + CDS 128344 - 129492 1525 ## COG1929 Glycerate kinase + Term 129553 - 129621 12.2 + Prom 129501 - 129560 3.8 131 67 Tu 1 . + CDS 129634 - 130647 931 ## COG3835 Sugar diacid utilization regulator + Prom 130670 - 130729 8.4 132 68 Tu 1 . + CDS 130770 - 131672 990 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase + Term 131690 - 131744 3.6 + Prom 131726 - 131785 5.4 133 69 Tu 1 . + CDS 131816 - 132526 785 ## COG3597 Uncharacterized protein/domain associated with GTPases + Term 132705 - 132741 4.1 - Term 132599 - 132663 4.1 134 70 Tu 1 . - CDS 132709 - 132798 98 ## + Prom 132581 - 132640 5.0 135 71 Tu 1 . + CDS 132763 - 132843 73 ## 136 72 Op 1 16/0.000 - CDS 132847 - 134556 2090 ## COG4176 ABC-type proline/glycine betaine transport system, permease component 137 72 Op 2 1/0.290 - CDS 134549 - 135739 1461 ## COG4175 ABC-type proline/glycine betaine transport system, ATPase component - Prom 135880 - 135939 12.4 - Term 135891 - 135932 3.6 138 73 Op 1 . - CDS 135941 - 136573 571 ## COG2188 Transcriptional regulators 139 73 Op 2 . - CDS 136588 - 138534 2052 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains + Prom 138653 - 138712 6.3 140 74 Tu 1 . + CDS 138748 - 139398 855 ## COG2344 AT-rich DNA-binding protein + Term 139405 - 139453 11.1 - Term 139392 - 139440 9.2 141 75 Op 1 . - CDS 139441 - 140094 667 ## COG1266 Predicted metal-dependent membrane protease 142 75 Op 2 . - CDS 140113 - 140289 195 ## EF2636 hypothetical protein - Prom 140311 - 140370 7.3 + Prom 140437 - 140496 6.3 143 76 Op 1 41/0.000 + CDS 140522 - 140806 422 ## COG0234 Co-chaperonin GroES (HSP10) 144 76 Op 2 . + CDS 140864 - 142489 1605 ## PROTEIN SUPPORTED gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 + Term 142511 - 142546 5.3 + Prom 142700 - 142759 12.6 145 77 Op 1 . + CDS 142791 - 143510 680 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 146 77 Op 2 . + CDS 143534 - 144244 846 ## EF2629 hypothetical protein 147 77 Op 3 . + CDS 144261 - 145808 1251 ## COG1705 Muramidase (flagellum-specific) + Term 145854 - 145916 10.1 148 78 Tu 1 . - CDS 145805 - 145879 61 ## - Prom 146019 - 146078 4.9 + Prom 145888 - 145947 6.8 149 79 Op 1 . + CDS 146027 - 146437 268 ## COG2246 Predicted membrane protein 150 79 Op 2 5/0.000 + CDS 146515 - 147999 1721 ## COG1488 Nicotinic acid phosphoribosyltransferase 151 79 Op 3 . + CDS 148002 - 148829 1131 ## COG0171 NAD synthase + Term 148833 - 148877 9.0 + Prom 148940 - 148999 4.7 152 80 Op 1 . + CDS 149022 - 150827 2010 ## COG2217 Cation transport ATPase + Prom 150838 - 150897 2.9 153 80 Op 2 5/0.000 + CDS 150919 - 151203 410 ## COG3592 Uncharacterized conserved protein 154 80 Op 3 . + CDS 151193 - 151468 401 ## COG2388 Predicted acetyltransferase + Term 151484 - 151532 12.7 + Prom 151527 - 151586 4.9 155 81 Tu 1 . + CDS 151636 - 151872 383 ## COG1314 Preprotein translocase subunit SecG + Term 151902 - 151951 12.4 + Prom 151937 - 151996 5.5 156 82 Op 1 4/0.065 + CDS 152027 - 152791 847 ## COG1647 Esterase/lipase 157 82 Op 2 10/0.000 + CDS 152791 - 155160 1620 ## PROTEIN SUPPORTED gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 158 82 Op 3 . + CDS 155173 - 155637 623 ## COG0691 tmRNA-binding protein 159 82 Op 4 . + CDS 155716 - 155817 81 ## + Prom 155820 - 155879 2.9 160 83 Op 1 40/0.000 + CDS 155940 - 156659 689 ## COG0356 F0F1-type ATP synthase, subunit a 161 83 Op 2 37/0.000 + CDS 156708 - 156929 436 ## COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K + Term 156940 - 156993 4.0 162 83 Op 3 38/0.000 + CDS 157067 - 157597 787 ## COG0711 F0F1-type ATP synthase, subunit b 163 83 Op 4 41/0.000 + CDS 157584 - 158126 703 ## COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) 164 83 Op 5 42/0.000 + CDS 158155 - 159711 2235 ## COG0056 F0F1-type ATP synthase, alpha subunit 165 83 Op 6 42/0.000 + CDS 159727 - 160635 1066 ## COG0224 F0F1-type ATP synthase, gamma subunit + Term 160644 - 160692 8.3 166 83 Op 7 42/0.000 + CDS 160709 - 162115 1930 ## COG0055 F0F1-type ATP synthase, beta subunit 167 83 Op 8 . + CDS 162132 - 162551 603 ## COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) + Term 162556 - 162584 -0.0 + Prom 162644 - 162703 6.1 168 84 Tu 1 . + CDS 162740 - 162976 146 ## EF2606 hypothetical protein + Prom 162978 - 163037 6.2 169 85 Op 1 . + CDS 163079 - 164380 1715 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase 170 85 Op 2 . + CDS 164394 - 164570 299 ## EF2604 hypothetical protein + Term 164584 - 164633 8.5 + Prom 164610 - 164669 9.5 171 86 Op 1 . + CDS 164698 - 165066 430 ## COG3731 Phosphotransferase system sorbitol-specific component IIA 172 86 Op 2 . + CDS 165071 - 166240 1405 ## COG0628 Predicted permease + Term 166246 - 166288 9.1 - Term 166233 - 166275 9.1 173 87 Tu 1 . - CDS 166302 - 166928 902 ## COG1182 Acyl carrier protein phosphodiesterase - Prom 167048 - 167107 8.9 + Prom 167005 - 167064 14.5 174 88 Op 1 7/0.000 + CDS 167229 - 168071 840 ## COG3711 Transcriptional antiterminator + Prom 168135 - 168194 1.9 175 88 Op 2 8/0.000 + CDS 168234 - 170114 2219 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 176 88 Op 3 . + CDS 170139 - 171584 1695 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase + Prom 171625 - 171684 5.4 177 89 Tu 1 . + CDS 171704 - 172273 654 ## COG0194 Guanylate kinase + Term 172278 - 172336 9.1 + Prom 172321 - 172380 9.3 178 90 Op 1 . + CDS 172421 - 173098 729 ## COG1309 Transcriptional regulator 179 90 Op 2 35/0.000 + CDS 173119 - 174846 185 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 180 90 Op 3 . + CDS 174843 - 176711 171 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 + Term 176784 - 176837 6.8 + Prom 176899 - 176958 7.8 181 91 Tu 1 . + CDS 177027 - 177872 1025 ## COG2514 Predicted ring-cleavage extradiol dioxygenase + Term 177922 - 177967 1.2 + Prom 177911 - 177970 4.0 182 92 Op 1 . + CDS 178002 - 179045 901 ## COG1680 Beta-lactamase class C and other penicillin binding proteins 183 92 Op 2 . + CDS 179087 - 180058 1249 ## COG1482 Phosphomannose isomerase + Term 180064 - 180104 7.0 - Term 180052 - 180091 -0.8 184 93 Op 1 . - CDS 180114 - 180659 369 ## EF2588 hypothetical protein 185 93 Op 2 . - CDS 180662 - 181636 780 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase - Prom 181780 - 181839 5.5 - Term 181822 - 181870 7.6 186 94 Op 1 10/0.000 - CDS 181873 - 182562 912 ## COG3442 Predicted glutamine amidotransferase 187 94 Op 2 . - CDS 182555 - 183907 1569 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase - Prom 183960 - 184019 11.5 - Term 184055 - 184101 8.0 188 95 Tu 1 . - CDS 184113 - 184751 623 ## COG2964 Uncharacterized protein conserved in bacteria - Prom 184893 - 184952 5.8 + Prom 184932 - 184991 10.7 189 96 Op 1 1/0.290 + CDS 185153 - 186487 1595 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 190 96 Op 2 1/0.290 + CDS 186518 - 189523 3035 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases 191 96 Op 3 . + CDS 189553 - 190926 1128 ## COG0044 Dihydroorotase and related cyclic amidohydrolases 192 96 Op 4 4/0.065 + CDS 190950 - 192143 1189 ## COG1171 Threonine dehydratase 193 96 Op 5 . + CDS 192149 - 193459 1648 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 194 96 Op 6 8/0.000 + CDS 193498 - 194691 1526 ## COG0078 Ornithine carbamoyltransferase + Prom 194853 - 194912 2.5 195 96 Op 7 . + CDS 194932 - 195876 1207 ## COG0549 Carbamate kinase 196 96 Op 8 . + CDS 195891 - 196271 447 ## COG0251 Putative translation initiation inhibitor, yjgF family + Term 196298 - 196344 -0.5 + Prom 196277 - 196336 6.5 197 97 Op 1 . + CDS 196365 - 197684 404 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 197699 - 197738 5.3 198 97 Op 2 . + CDS 197778 - 198137 352 ## COG2005 N-terminal domain of molybdenum-binding protein 199 97 Op 3 6/0.000 + CDS 198188 - 199141 820 ## COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family + Term 199171 - 199214 2.0 + Prom 199163 - 199222 6.0 200 97 Op 4 1/0.290 + CDS 199262 - 201835 2340 ## COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs 201 97 Op 5 . + CDS 201849 - 202430 762 ## COG2068 Uncharacterized MobA-related protein 202 97 Op 6 . + CDS 202444 - 203592 1045 ## COG0520 Selenocysteine lyase 203 97 Op 7 . + CDS 203608 - 204630 926 ## COG0709 Selenophosphate synthase 204 97 Op 8 . + CDS 204646 - 205233 782 ## EF2566 hypothetical protein 205 97 Op 9 . + CDS 205254 - 205511 160 ## EF2565 hypothetical protein 206 97 Op 10 . + CDS 205499 - 206254 470 ## EF2564 hypothetical protein 207 97 Op 11 . + CDS 206218 - 207048 726 ## COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family + Term 207232 - 207269 0.9 + Prom 207158 - 207217 9.0 208 98 Op 1 . + CDS 207291 - 207749 618 ## COG0716 Flavodoxins 209 98 Op 2 5/0.000 + CDS 207805 - 208644 994 ## COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases 210 98 Op 3 . + CDS 208637 - 210055 1493 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases 211 98 Op 4 . + CDS 210076 - 213609 3811 ## COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit + Term 213615 - 213652 6.4 - Term 213601 - 213640 6.0 212 99 Tu 1 . - CDS 213646 - 215061 1208 ## COG0168 Trk-type K+ transport systems, membrane components - Prom 215083 - 215142 10.5 + Prom 215313 - 215372 7.3 213 100 Tu 1 . + CDS 215431 - 216948 2235 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Term 216962 - 217009 10.3 + Prom 217002 - 217061 4.8 214 101 Op 1 3/0.097 + CDS 217175 - 217759 497 ## COG1435 Thymidine kinase 215 101 Op 2 32/0.000 + CDS 217771 - 218844 1439 ## COG0216 Protein chain release factor A 216 101 Op 3 10/0.000 + CDS 218837 - 219670 236 ## PROTEIN SUPPORTED gi|169796031|ref|YP_001713824.1| putative adenine-specific methylase 217 101 Op 4 1/0.290 + CDS 219714 - 220736 1344 ## COG0009 Putative translation factor (SUA5) 218 101 Op 5 5/0.000 + CDS 220812 - 222050 1545 ## COG0112 Glycine/serine hydroxymethyltransferase + Term 222096 - 222147 6.3 + Prom 222097 - 222156 6.8 219 101 Op 6 . + CDS 222182 - 222811 889 ## COG0035 Uracil phosphoribosyltransferase + Term 222822 - 222865 7.1 + Prom 222837 - 222896 10.3 220 102 Tu 1 . + CDS 222916 - 223188 303 ## EF2548 hypothetical protein + Term 223337 - 223374 1.2 221 103 Tu 1 . - CDS 223262 - 223498 216 ## EF2547 hypothetical protein - Prom 223674 - 223733 78.7 + TRNA 223657 - 223732 76.4 # Thr CGT 0 0 222 104 Tu 1 . - CDS 223854 - 225023 758 ## COG0582 Integrase - Prom 225067 - 225126 1.9 223 105 Op 1 . - CDS 225137 - 225751 568 ## EF2042 hypothetical protein 224 105 Op 2 . - CDS 225765 - 226499 753 ## EF2795 LysM domain-containing protein - Prom 226522 - 226581 3.5 225 106 Op 1 . - CDS 226585 - 226998 352 ## LAR_0770 hypothetical protein 226 106 Op 2 . - CDS 227008 - 227349 410 ## COG1396 Predicted transcriptional regulators - Prom 227374 - 227433 12.3 + Prom 227381 - 227440 8.8 227 107 Op 1 . + CDS 227639 - 227830 314 ## EF2039 hypothetical protein 228 107 Op 2 . + CDS 227842 - 228123 248 ## gi|315143727|gb|EFT87743.1| conserved domain protein 229 107 Op 3 . + CDS 228077 - 228790 652 ## COG3646 Uncharacterized phage-encoded protein 230 107 Op 4 . + CDS 228801 - 228986 283 ## gi|315143729|gb|EFT87745.1| conserved domain protein 231 107 Op 5 . + CDS 228998 - 229171 149 ## EF2845 hypothetical protein 232 107 Op 6 . + CDS 229168 - 229278 121 ## 233 107 Op 7 . + CDS 229279 - 229473 333 ## gi|307280607|ref|ZP_07561655.1| hypothetical protein HMPREF9515_01649 Predicted protein(s) >gi|307679193|gb|GL457054.1| GENE 1 108 - 1322 1332 404 aa, chain + ## HITS:1 COG:L0027 KEGG:ns NR:ns ## COG: L0027 COG4468 # Protein_GI_number: 15673964 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose-1-phosphate uridyltransferase # Organism: Lactococcus lactis # 1 340 1 369 493 196 32.0 6e-50 MTTSQMIADFTTLAIQAGGWMELDRLYLQNRLLSMIGEQELGEVDIRPVATPAADLAEQL CQIASANQLVKTEQQKEQFMVQLMDLLTPPPSVVNAFFAQHYAKEPQEATEYFYQLCQKN GTVIEQEEPVVFSTVYGDFLANKVHSEAPKATLSAQSYPRCEWCMATEGYQGSQQFPATT NHRVIRMNLDGESWGFSFVKQAQYQQQGVIAFEKHQAAKRSIKTFQQLLKIVEVFPHYFA GIDADFEQNEHVYYQTGLQQFPLAEASISEYVELANYPLINAGMVNWPVATFRLEGPNAL EVAQAANDIFEQWQMLKLPTDEIQIVARRKELLYVMDLIFSRPQAKPSLTLAEVQGLTTW NNQKTQALETIASAYQQRLKEASAFAETSEGKAAFLAMVAPVTH >gi|307679193|gb|GL457054.1| GENE 2 1394 - 3154 2058 586 aa, chain + ## HITS:1 COG:lin2852 KEGG:ns NR:ns ## COG: lin2852 COG2812 # Protein_GI_number: 16801912 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Listeria innocua # 1 585 1 579 579 527 48.0 1e-149 MAYQALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAK AINCKHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEY KVYIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRIST QDIVDHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQV TGSLTYEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPK LLAEKAGTLTEAFKELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLAKTV QPNKHNTPETANQDGSAEGNPELADLQNQIGQLKKELAELKKHGVAAKEADAPRQQARPQ APKSSFRVPTERVYQVLNEATRTHLMNVKNVWEDLLQTLSVTQRAMLKASEPVAASPKGI VVAFDYEIVCARATDDEEMQLAFNNNLSRLMDYTPEMVCITRESWPKLRQSFINQNQGSL NHSEPENEMARLADEPPVTNEHSQENPVVDEAIAMFGEELVEVLDD >gi|307679193|gb|GL457054.1| GENE 3 3175 - 3489 636 104 aa, chain + ## HITS:1 COG:L122849 KEGG:ns NR:ns ## COG: L122849 COG0718 # Protein_GI_number: 15672102 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 5 102 1 98 99 93 58.0 1e-19 MMRGMGNMQGMMKQVQKMQKEMAKAQEALNEKEFIGEATNQLVTATFTGDRTMKDLTIKE DVVDPEDVDMLQDLVIMAVNDALVKIEKETEATLGKYTKGMPGF >gi|307679193|gb|GL457054.1| GENE 4 3824 - 4354 583 176 aa, chain + ## HITS:1 COG:SP0723 KEGG:ns NR:ns ## COG: SP0723 COG4732 # Protein_GI_number: 15900620 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 5 175 7 172 174 185 58.0 4e-47 MEKNRIHRVTLLALMIAMDVVLSPLMRIEGMAPMSSVMNIIAGVLLGPLYGTLMALVCGL IRMTFLGIPPLALTGAVFGAFFAGLFYQWGQKLGWSMLGEIFGTGIIGSLLSYPVMVWFT GSKQNFYWFIYTPRFIGATLIGSVIAWLVLVKLKETRVFKQTQELFLGGYFYENKR >gi|307679193|gb|GL457054.1| GENE 5 4338 - 5156 776 272 aa, chain + ## HITS:1 COG:SP0724 KEGG:ns NR:ns ## COG: SP0724 COG2145 # Protein_GI_number: 15900621 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxyethylthiazole kinase, sugar kinase family # Organism: Streptococcus pneumoniae TIGR4 # 6 271 3 265 267 237 46.0 2e-62 MKTSVKFETIFPLTTAPLIQCITNEITCESMANALLYIDAKPIMADDPREFPQLFQQTSA LVLNLGHLSQEREQSLLAASDYARQVNKLTVVDLVGYGASDIRNEVGEKLVHNQPTVVKG NLSEMRTFCQLVSHGRGVDGSPLDQSEEAIEELIQALRQQTQKFPQTVFLATGIQDVLVN QEQVIVLQNGVPELDCFTGTGDLVGALVAALLGEGNAPMTAAVAAVSYFNLCGEKAKTKS QGLADFRQNTLNQLSLLMKEKDWFEAVKGRVL >gi|307679193|gb|GL457054.1| GENE 6 5153 - 5788 586 211 aa, chain + ## HITS:1 COG:SP0725 KEGG:ns NR:ns ## COG: SP0725 COG0352 # Protein_GI_number: 15900622 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate synthase # Organism: Streptococcus pneumoniae TIGR4 # 2 207 3 209 210 238 59.0 7e-63 MREQLKVYLVTGRYDFSDTEFLNRIETACRSGVTLVQLREKEVSTRRFYELAVKVKAVTD AYQIPLIINDRVDICLAVDAAGVHIGDDELPVALVRKLVGSTKIVGVSAKTVARGVEAEN EGVDYLGVGAIFPTMTKDSPLTSLQTLSEIAAAVTIPVVAIGGIKEENIEQLMGTGVAGV SLVSEIMLAEQITEKVQGLMRVTERMLEARK >gi|307679193|gb|GL457054.1| GENE 7 5785 - 6615 1042 276 aa, chain + ## HITS:1 COG:L0200 KEGG:ns NR:ns ## COG: L0200 COG0351 # Protein_GI_number: 15673245 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Lactococcus lactis # 9 269 6 266 267 255 53.0 5e-68 MTEYNLTPQVVTIAGSDSGGGAGMQADLKTFQARQAFGLNIVIALTAQNTYGVQDSLPIP SSFIDAQFQSLADDFKIGAAKTGMLADSERVEAVVRNLQKVDFGPLIVDPVMVAKGGHHL LEAEAVQTIKEQLLPLATVVTPNLPEAEVLLETTIKTEQEMQTAAKKLQQLGTKNIIMKG GHSTNQQAADYVLMEDGSSFWLSAPRIVTKNTHGTGDTFSACIAAELAKGTPLEAAIVIG KQFIQGAISQAISVGHGHGPTNHWAQLTQDIQVIKA >gi|307679193|gb|GL457054.1| GENE 8 6709 - 7065 359 118 aa, chain - ## HITS:1 COG:L133547 KEGG:ns NR:ns ## COG: L133547 COG1733 # Protein_GI_number: 15672316 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 4 112 3 111 115 162 72.0 1e-40 METRTYAIGVEATMDVIGGKWKPIILCNLRHGAMRPSDLKRGITGISQKMLTQQLRELEE DNIIERKVYNQVPPKVEYYLSDYGQSLSAVLDNLCNWGESHVAHLQEQGQEIYLKCED >gi|307679193|gb|GL457054.1| GENE 9 7210 - 8400 1352 396 aa, chain + ## HITS:1 COG:L131423 KEGG:ns NR:ns ## COG: L131423 COG2814 # Protein_GI_number: 15672314 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Lactococcus lactis # 3 392 2 392 393 426 70.0 1e-119 MEKKISPNLTLFALAINAFAIGSTEFISVGLLPMIVKSFHISLSQAGLTVSLYALGVTIG APLLTILTGKWNRRSLMLGIMLLFISGNLIAAFAPTFIILLVGRILSALAHGIFMSVSTV IAADVVPPSRRASAIAIMFTGLTVATVTGVPLGTFIGQQTAWHMSFLFIASIGLVGLIAS YFLVPKNLPIPGKVDLKGITRIFTNKPLVFSFLITAFGYGGTFAAYTYLSPLLENLGFSA NAVVIILVVYGVMVAIGNTVGGHWANKKPLDSLVKMFSLLILSLVFLFITVLMDNSLLGL LASLMLGLFAFMNVPGLQLYVVELAEKYVPEDITLASAFNIAAFNIGITVGSMTGGVVTD HLSVTYTPIFGGFIVLIAVLFVLYIRKQEEQKNNYL >gi|307679193|gb|GL457054.1| GENE 10 8451 - 9812 1267 453 aa, chain - ## HITS:1 COG:L184818 KEGG:ns NR:ns ## COG: L184818 COG0477 # Protein_GI_number: 15673330 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 2 451 3 449 454 325 48.0 8e-89 MEQKNVRLFPAVLATGIMSFAGVLIETAMNVTFPTLTKEFGVSTGTVQWVTTIYLLVISI MVPLSNYLLKTYSLRRLFIVANLFFLIGLAIDVYSPSFSILLLGRLFQGASTGIALPLMF HIILNFTPLEKRGTMMGVGTLTTSIAPAIGPTYGGILTSSLSWHAIFLFLIPILLLSLFM GLSAIPEIPVKKTTTLDLVSLIGIALLFSGLLMFLSKIGTLFGWLSLLAAVIGFVIFYKR ATTAEQPLVRLTILKNPAFVLFLCGFLVCQFLLLGISFVLPNFVQIVLGKNAFVAGLVML PGATVGAILAPLSGRVLDQYGAKKPILFGLSLATIGWLALTILLEMPVLLGFVAGHVTYM IGLGFAYSNMMTTGMSLLEEKDFGDGNTLFNTLQQFSGAIATAIVATIINIAQDHADNFA QGTTMGSLISLIFLLTLLVIVLIACWNYFRKKA >gi|307679193|gb|GL457054.1| GENE 11 9976 - 10761 726 261 aa, chain - ## HITS:1 COG:no KEGG:EF2771 NR:ns ## KEGG: EF2771 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 261 1 261 261 433 99.0 1e-120 MGKTLTGFHLKVIGVISMVFDHLLQFFSFLGVPGWFGWIGRIAAPIFLFESSEGFIHTSN RRKYMFRLLLGFWIMGILNGILNAYFSTGGLIINNIFGTLFLGTVYMQSMDYFKQKQIGK GLLWFIVPLLISALPLVVFSSPDILSNPAILIGFQLFNLIVPSLMMTEGGFLFVLLAVAF YLFHGKKWLQISAIGVVALISAASYNFQELFGVNHQWMMILAAIPIVLYNGEKGRGMRNF FYIFYPAHIAIFAIISFFMQR >gi|307679193|gb|GL457054.1| GENE 12 11136 - 11699 651 187 aa, chain + ## HITS:1 COG:SP0719 KEGG:ns NR:ns ## COG: SP0719 COG4721 # Protein_GI_number: 15900616 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 1 177 2 178 186 149 53.0 2e-36 MKKWSLQQVVLLAFLAFLFGGVFMGAGFLYALLNAALLPLGLSPFANELLFGMWTMVAPI AAMLIPRAGSAVLAEVLAALAEMLYGSYFGPSVLISGVIQGLGSESGFFVTRYKRYDTLT LFYSAIGTTIFSYVYEYFKFGYGNYGLGMNIALISVRFVSICFFGIFLTKVILRMYQSAQ GLAVKAK >gi|307679193|gb|GL457054.1| GENE 13 11696 - 13054 992 452 aa, chain + ## HITS:1 COG:SP0720 KEGG:ns NR:ns ## COG: SP0720 COG1122 # Protein_GI_number: 15900617 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Streptococcus pneumoniae TIGR4 # 4 452 3 447 461 309 40.0 7e-84 MNSIQLKAVSFSREQPLFEKTNLAIPQGTFSLLIGDSGSGKSTLLRLIAGFAPLDYQGEI LIEGMERRQLSTREKTQKIGMLFQNPSQQFTMKTLERELIFALENLGISPEEMNRKIQTA LQLVQTQTLFTRELATLSGGEKQKAALTVLLAMNPDILLLDEPFASIDPTSRKQFIQILA RLHQAGKTILVCDHDFNDYADVVDQVVTLKNGQFEKQPLTFIKTKPQTFQLTTSVVKQPM LQLKNFRLSQGKRVLLEEKEALLFKGITTLTGPNGAGKSTLLKAIVQRQKYQGKMFLAGR RLRASKKLYQHMTLAVQQANRQFVTLTLREELLFGQNMTAEKRRKQEEALTFLGLKEKLE HSVFQLSEGQKKMVQLISLLSLDLDCLLLDEPFAGLDERACNYFVEWIKEKSAQQDFLIV THRLEPLSGVSNYRIELLQQQLNIWQEGTTCK >gi|307679193|gb|GL457054.1| GENE 14 13045 - 13698 475 217 aa, chain + ## HITS:1 COG:no KEGG:EF2768 NR:ns ## KEGG: EF2768 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: ABC transporters [PATH:efa02010] # 1 217 1 217 217 350 99.0 3e-95 MQIKQTNAAIYASLILILTFELSFSQSILANLAVFLGCVIFLIGQRKSRLLLWLFFLPLL PAIGTFWSIYLHGTSSQQAWLLFSRTYAFAGLGLAFAVGVDFEELLLLLEQKGLAPNFVY GILVVVHALPEVKREINDLKEASLLRGKTFHFWSPMLYVKTLLVAVSWRDKYTEAMSAHG YEEGATRSRKEHFVSAKVSLGLAILIIIFTNLFIFLT >gi|307679193|gb|GL457054.1| GENE 15 13710 - 14372 831 220 aa, chain + ## HITS:1 COG:L0228 KEGG:ns NR:ns ## COG: L0228 COG0819 # Protein_GI_number: 15673761 # Func_class: K Transcription # Function: Putative transcription activator # Organism: Lactococcus lactis # 1 218 1 218 218 222 55.0 4e-58 MTFTEQAKEQAQASWQGSFQHPFITELHEGTLSPTIFRYYLIQDHYYLKHFSQLYRLIAA QTQQPRLKKLLLTNAESLALGELAIRETFFEELAITEEEVAATPIAPTAYHYVSHMYRQL IEGTPKTAAASMLPCSWLYQEIGAQLVKQHSPEPLYQRWIETYAGEEAYQHVQEERQLLD QLYEESSPQEQAAMITAFVISSEMEYAFWEMAYTHETWIG >gi|307679193|gb|GL457054.1| GENE 16 14548 - 15144 583 198 aa, chain + ## HITS:1 COG:L0265 KEGG:ns NR:ns ## COG: L0265 COG0353 # Protein_GI_number: 15672322 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Lactococcus lactis # 1 198 1 198 198 300 75.0 2e-81 MNYPEPIAKLIESYMKLPGIGQKTATRLAFYTIDMKEEDANAFAKALISVKRDLHFCSIC GNITEEDPCEICQDKNRDRSIILVVEEPKDVMAMEKMREYQGLYHVLHGVLSPMEGTGPE DINIASLIKRLHDDEVKEVIIATNATTEGEATAMYLSRLIKPAGITVTRLAHGLSVGSDI EYADEITLLKAVEGRREI >gi|307679193|gb|GL457054.1| GENE 17 15353 - 15991 827 212 aa, chain + ## HITS:1 COG:BH0042 KEGG:ns NR:ns ## COG: BH0042 COG0125 # Protein_GI_number: 15612605 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate kinase # Organism: Bacillus halodurans # 2 207 3 207 210 217 56.0 1e-56 MQGIFITFEGPDGAGKTSVLKEVSERLAKESKRKIVTTREPGGIPIAEKIRTVILDPRND RMDERTEALLYAAARRQHLVEKIFPALEAGHLVLCDRFVDSSLAYQGAGRRIGIAPIASI NAFATEGVSPDFTIYLDVDSDTGLRRIQENRTQQIDRLDSEGLEFHQRVRHEYLKLAEEN PQRIKKIDARMSLELVVEATYQAIIERYPENF >gi|307679193|gb|GL457054.1| GENE 18 16011 - 16340 511 109 aa, chain + ## HITS:1 COG:lin2840 KEGG:ns NR:ns ## COG: lin2840 COG3870 # Protein_GI_number: 16801900 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 109 1 109 109 143 59.0 7e-35 MKIILAIVQDKDSNRLANEFIDANIRATKLSSTGGFLKAGNSTFIIGIDDERVDETLALI KETCQSRKQYVSTPVTLDITMDGQIPYPVEVEVGGATCFVLPVEGFHQY >gi|307679193|gb|GL457054.1| GENE 19 16342 - 17292 889 316 aa, chain + ## HITS:1 COG:BS_holB KEGG:ns NR:ns ## COG: BS_holB COG0470 # Protein_GI_number: 16077099 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication # Organism: Bacillus subtilis # 5 311 6 326 329 222 38.0 6e-58 MNEAQQLQQMQPLLYKQLQKSFEHGRLAHAYLFEGDTGTGKQEFGLWMAKHVFCTNLVNQ QPCNECHNCVRINENEHPDVLRIAPDGQTIKVNQIRELKAEFSKSGVETAKKVFLIQEAD KMSTGAANSLLKFLEEPEGQILAILETTSLSRILPTIQSRCQTLHFQPLVKKTLIDRLIK QGIGEKTATLLAELTNSFEKAVEISQDEWFNEAREIILQWFNYLKSNDLQAFIYVQKKMV KVFKEKEQQALSFDLLMVYYRQLLEESVSTQQAKKVTEEQAERLALILKARQKWTANVSW QNVCEQLVIQMIHPKS >gi|307679193|gb|GL457054.1| GENE 20 17409 - 18248 965 279 aa, chain + ## HITS:1 COG:BH0045 KEGG:ns NR:ns ## COG: BH0045 COG1774 # Protein_GI_number: 15612608 # Func_class: S Function unknown # Function: Uncharacterized homolog of PSP1 # Organism: Bacillus halodurans # 1 249 1 249 275 321 65.0 8e-88 MVEVVGVRFREAGHIYYFAPGKSEYIYNEKVLVESQQSKQLATVAIPKKTVDSDDLPEDL KPILNKATANDLEKEQKNLADAEAAKSIANEKIRAHDLKMKLVRVEYTFDRSKMIFYFTA DGRIDFRELVKDLAAIFRTRIELRQIGVRDEAKILGGIGPCGRQLCCSTFLGDFMPVSIK MAKDQGLSLNPVKISGLCGRLMCCLKYENDEYEAAKKELPDYGKEVITPDGKGKVVGLNL LSRIVKVRLHGREIAADYDYEEIKEATAKVAAEKGDQNG >gi|307679193|gb|GL457054.1| GENE 21 18241 - 18588 399 115 aa, chain + ## HITS:1 COG:SPy0405 KEGG:ns NR:ns ## COG: SPy0405 COG4467 # Protein_GI_number: 15674542 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 109 1 104 107 75 40.0 3e-14 MDKRSLYDGLNSLETDLDSSVTQLREIKAALHELVEKNTTLEIENQRLREHLQELNKLAG NTTETEKQELSKSRMNLEKLYEEGFHVCNILYGSRRENDEECAFCLDVIYGERTR >gi|307679193|gb|GL457054.1| GENE 22 18700 - 19572 827 290 aa, chain + ## HITS:1 COG:L6615 KEGG:ns NR:ns ## COG: L6615 COG0313 # Protein_GI_number: 15672384 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Lactococcus lactis # 4 290 19 302 302 295 54.0 7e-80 MQKQKSFDKQTTKGKLYLVPTPIGNLEDMSIRCLNILKEATVIASEDTRNTQKLLNHFEI TTPQISLHEHNYKERIPQLITRLLNGETIAQVSDAGMPSISDPGHELVTACLEEELAVIA LPGPTAGMTALIASGLLPQPFTFYGFLPRKKKEQKDVLSALKEERPTQIFYESPYRIAKT VATFAEVYGQERPAVICRELTKLHEEYLRGTLGELTEYLAENTLKGECCLLVSGFTGEKE TIAAMPAISLKEHVQVLMEEEGRSSKDAIKEVAKLRNVKKQEVYKEYHSI >gi|307679193|gb|GL457054.1| GENE 23 19587 - 20249 213 220 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 193 1 199 223 86 32 8e-16 MSNLLRAEGVSYQVNGRSILSDIDLSFETGSNTTIVGPSGSGKSTFLKILSSLLSPTEGE IFYQEAPITTMPIETYRQKVSYCFQQPTLFGETVYDNLLFPFTVRQEAFNQEKVVALLQQ VKLPAAYLEKKIAELSGGERQRVALLRNIIFVPDVLLLDEVTTGLDEESKQIVNQLLNQL NKEQGVTLVRVTHDTEEIQQAQQVIRIVAGKVAPTDGFSS >gi|307679193|gb|GL457054.1| GENE 24 20233 - 20991 685 252 aa, chain + ## HITS:1 COG:STM0503 KEGG:ns NR:ns ## COG: STM0503 COG0390 # Protein_GI_number: 16763883 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Salmonella typhimurium LT2 # 5 252 6 253 259 261 60.0 9e-70 MDLAVNNLSLFFSAMLVVVALIISTKEKLGFTKDIIISVIRAVIQLVAVGYLLKYVFQVN NLILTLIMVLVIVSNAAFNAKKRSQQLQKGFLISFIAIGCSTGITIGILIFSGSIKFIPS QIIPISGMIASNSMVAIGLCYRNLDTLFQNQRQAVMEKLALGATIKLASLPIIQQSVKTG MAPTIDSAKTVGIVSLPGMMSGLIFAGVDPVHAIKYQIMVTFMLLSATSIGSVIATYLAY KGYYNQQKQLVV >gi|307679193|gb|GL457054.1| GENE 25 21117 - 22235 1280 372 aa, chain + ## HITS:1 COG:SPy1846 KEGG:ns NR:ns ## COG: SPy1846 COG0389 # Protein_GI_number: 15675671 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Streptococcus pyogenes M1 GAS # 5 357 2 354 364 431 60.0 1e-121 MMSELRFPLKKDTSRKIIHIDMDAFFASVEERDHPELVGHPLVIARHPSDTGGKGVVTTA NYIARQYGIHSAMSAQKAYELCPSAIFKPGNYQKYSEISQEIREIFRRYTDVIEPVSIDE AYLDVTENKVNSKSAIKIAKMIQYDIWHELQLTCSAGVSYNKFLAKLASDFQKPKGLTVV LPEEAEDFLKALPIEDFHGIGKKTVPKMHELGIFTGADLYKQDEMTLIRLFGKMGYSLYR KVRGIHDAPVQVTRDRKSVGKEHTYGTPLTTEEQVTAQLRQLAAGVERALQRVQKHGKTV VLKVRYTDYTTITKRVTLPEYISKKEELFYQANLIWEDILGLEQGIRLLGITLTNLDPLA YENIVLPLWEKS >gi|307679193|gb|GL457054.1| GENE 26 22280 - 22876 522 198 aa, chain - ## HITS:1 COG:SP0205 KEGG:ns NR:ns ## COG: SP0205 COG0602 # Protein_GI_number: 15900141 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Organic radical activating enzymes # Organism: Streptococcus pneumoniae TIGR4 # 1 196 1 195 196 283 67.0 1e-76 MRNPKPQEWKTEDYSQKKIADYKAFNFVDGEGVRNSLYVSGCLFACEGCFNKAVQNFNYG TPFTESLMNQIIEDLSHDYVQGLTLLGGEPFLNTDVCLSVVKRVRETFGSAKDIWSWSGY TFEELLLETPDKLELLHSIDILVDGRFELAKRNLNLQFRGSSNQRIIDVPKSLAAGKAVI WEKCHDAETSYEQIKKSI >gi|307679193|gb|GL457054.1| GENE 27 22909 - 25092 1878 727 aa, chain - ## HITS:1 COG:SPy2110 KEGG:ns NR:ns ## COG: SPy2110 COG1328 # Protein_GI_number: 15675860 # Func_class: F Nucleotide transport and metabolism # Function: Oxygen-sensitive ribonucleoside-triphosphate reductase # Organism: Streptococcus pyogenes M1 GAS # 17 725 15 722 732 1198 79.0 0 MMKITDEKAEDVNLSTIKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSI VADVNREIAERFTNNVKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFQRSKATDINV SIGKLINKDQTVVNENANKDSDVFNTQRDLTAGIVGKSIGLKMLPSHVANAHQKGDIHYH DLDYHPYTPMTNCCLIDFKGMLNNGFKIGNADVESPKSIQTATAQISQIIANVASSQYGG CSADRIDELLAPFAERNYEKHLADAQEWIEGEERQKAFAQKKTKKDIFDAMQSLEYEINT LFTSNGQTPFTSLGFGLGTNWFEREIQRAILQIRINGLGIEKRTAIFPKLIFTIKRGVNA QPTDPNYDIKQLALECATKRMYPDVLNYDKIVELTGSFKVPMGCRSFLQGWKDEQGEEVN VGRMNLGVVTLNLPRIALEAQGSQEKFWQILNERLAIVKDALVYRVERVKEAKPANAPIL YMYGAFGKRLATQDAVDELFKNKRATVSLGYIGLYEVASAFYGGAWEDNQEAKNFTLDIL KELKKNADNWGNEYGYHFSVYSTPSESLTDRFCRLDTEKFGIVENITDKEYYTNSFHYDV RKNPTPFEKLDFEKDYPKYCSGGFIHYCEYPMLQQNPKALEAVWDYAYDKVGYLGTNTPI DHCYACGFEGDFHPTERGFECPECGNHDPKTCDVVKRTCGYLGNPQARPMVHGRHKEISS RVKHLKN >gi|307679193|gb|GL457054.1| GENE 28 25498 - 26265 290 255 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 222 1 219 223 116 31 1e-24 MKKIVEVNHVSKTYGRLNNKTEVLDNISFTVDEGEFVGIMGPSGAGKSTLLNVLSSIILP TAGIVRIAGQDILKMRDNQLSDFRRNEMGFIFQSFNLIDTLNVKDNILLPLAVEKVSLEE MDKRLLHVTSILGIQELLSAYPPEISVGQKQRVAAARALITNPKIIFADEPTGSLDSKSA TELLKYLAEINLHDDATILMVTHDPYTASFCNRILFIKDGAIFSEVVRQGSRKEFFNRVI DMQATIGGGGRANDF >gi|307679193|gb|GL457054.1| GENE 29 26255 - 28351 1618 698 aa, chain + ## HITS:1 COG:lin2220 KEGG:ns NR:ns ## COG: lin2220 COG0577 # Protein_GI_number: 16801285 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Listeria innocua # 2 693 3 642 646 189 25.0 2e-47 MIFKLSLKNLKAHVPNYLVYYISMTFAAVVYYCFRAIAYNQPLVAGAGRDIEIKRSLGLG STLVTIIILGFMLAANRFFIGKRSQEIGLYRLIGLRKSQVSLIFLVENLVLGFVSLINGI ILGVIFTKLFSMILAKVMFLEVPSFFYISWRSVIETGVAFAFMILIVCLRSIWMIYRYPL SQLMHQEKIGQINYSRLTKRRQFLGILGPICLLAGYFIAFDFRNLATGIVYKQLNDSLDI SIPMIITLTPFIILGLCVVGTYLFFRYTMYFIIRLFNHRKKWYYQDLRMITLGNAKRYLF KSSKTLTGLTLLIATALSGIGVMVFVYTISMHTVNSDGPVDFLVSQESYPKLKKVLDEAK DTKIKNEVTLSYKITGIERSLRIGQAQEEQETIEAVNVLSFSNYRNYQKINPYLNDLHLK NDQSVIYMDSFINILSGMSRYESKLQFVEGEKAQLQQVLPNYLGNFLLQYSLPTIVVSDA LYQKVTKNSIQYQINAVNVDTKSREKLYEAVNKQIATEWQAPILYKYEKNNQQLSGFAKQ MPNEEVKNTQDDVTETWRLNMNDRYASLRYERKINGLTLYVSMFVAILALFITGSILMLR QLFSAVSERQDYVTLKRMGVSSKAITKQIYRQNSLIFFPPMVIGILHTTFAIYLLSQFIK SPGYLLVYLSCGILIIVYLIFYILTSAIYARMIRHIHF >gi|307679193|gb|GL457054.1| GENE 30 28555 - 28704 145 49 aa, chain + ## HITS:1 COG:no KEGG:EF2750 NR:ns ## KEGG: EF2750 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 49 1 49 49 67 100.0 3e-10 MKTTFQKILNNESLKFIGKTLFYSFIVIALIYLYHYKNINGGTFIYNEF >gi|307679193|gb|GL457054.1| GENE 31 28719 - 30239 1750 506 aa, chain + ## HITS:1 COG:SP2176 KEGG:ns NR:ns ## COG: SP2176 COG1020 # Protein_GI_number: 15901986 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Streptococcus pneumoniae TIGR4 # 4 504 6 514 516 490 50.0 1e-138 MEKVINMIQTIDEWARKEPQRPVYLTEEKVSTYGELKEKSDNLAAYLAELKTDKSAIVVY GELDFEMIVSFLGASKAGFSYIPIDAHTPKERIELILNVAKPTAVIAVHEWPELATEVPV ITAEELTEMMMHAPRYAPELTPVTGASNYYIIFTSGTTGVPKGVQISHDNLVSFTNWLLQ DFGLEEGARFLAQAPYSFDLSVMSIYPALALGGSLTPLPNEIINDFKQLFTRLPQLTIDV WVSTPSFIELCLMEPSFDGEHLPALRTFLFCGEELPKPTAEKLAARFPTAHIYNTYGPTE ATVAISAIEITQEVLKSVQRLPIGYVKEDTQIYIMEGMSKLPAGEIGEIVIAGPSVSKGY LNNPAKTAEAFFQLDGVPAYRTGDAGKLVDNLLQYEGRLDFQIKLHGYRIELEEVDHHLT NVSYVKQAVVVPKYQGNKVQQLIAYVVPQAHEFSSDFQLTKAIKQELATLTMDYMIPQKF VYVEQLPLTSNGKIDRKGLMNEVNAT >gi|307679193|gb|GL457054.1| GENE 32 30236 - 31441 1245 401 aa, chain + ## HITS:1 COG:SP2175 KEGG:ns NR:ns ## COG: SP2175 COG1696 # Protein_GI_number: 15901985 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane protein involved in D-alanine export # Organism: Streptococcus pneumoniae TIGR4 # 4 401 7 412 413 361 48.0 1e-99 MMNFPHMIPYNAPHYFVLLIAALLPMILTLAIKGTRWPWYQTLVTLVFLYISFGGEFWQQ GVALIVYVIYQTLLTWGYAAYRKNKNAGWVFYLAVFLAILPLVWVKVSPFMTGKTTLLGF LGISYLTFKAVQVVMDLRDGVMKEYHPFRYIQFLLFFPTISSGPIDRYRRFEKDLKNPPS AEKYLDFLEKGIFYLFLGFLYKFIISHYLGGVFLPHVEKMALAQGGLSWWTVGYMYNYSL YLFFDFAGYSLLAVGTSYLMGYDTPMNFNKPFLSWNIKEFWNRWHMTLSFWFRDYIYMRL MFFLMKKKVFKSRIVTSNIGYFALFLIMGIWHGLTWFYIAYGLYHATLICVTDAWLRFKK KHKDKIPSNKFTHAFAVFLTFQAVCVSFLIFSGFLDKLWFK >gi|307679193|gb|GL457054.1| GENE 33 31474 - 31710 491 78 aa, chain + ## HITS:1 COG:lin0971 KEGG:ns NR:ns ## COG: lin0971 COG0236 # Protein_GI_number: 16800040 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Listeria innocua # 1 78 1 78 78 82 65.0 2e-16 MNIQETVLNILEDITGTDEVVNNQDIQLFEEGLLDSLATVQLLVEIEGQLGIQVPVSDFD REVWGTPKQIIQQVEALQ >gi|307679193|gb|GL457054.1| GENE 34 31845 - 32984 1311 379 aa, chain + ## HITS:1 COG:lin0970 KEGG:ns NR:ns ## COG: lin0970 COG3966 # Protein_GI_number: 16800039 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) # Organism: Listeria innocua # 1 366 45 413 424 259 36.0 5e-69 MAPNVLKGNVIKNKAVASGKYVPFFGSSELSRFSAFHPSVLSEKYQRNYRPFLLGEAGTQ SLTQAMVIHSMGDAIANKKAVFILSPQWFVKKGVPNDSFGAHYSQLQTYQWLANLTELTS GDQYLAQRLTKFPVVQKDKVLMETLANLQAGQLPQRSQRDYFIMNLRFLNREDELFSQIG MVSREPIVEKDMKQLPATYNFNELDQLAGKIAAKAINNNKFEISNGFYRQRIKPVLPKLA HSQKKWDYRFSPEYGDFQAALEQLAEKNVDVLFVIPPVNKRWSDYTGLSQDMLQQVARKL KYQLQEQGFTNIADFSTCSNERYFMADTIHLGWRGWLAVDRQVDEFMKQPASKKLAYQID DRFYQTDWQQQNPLVLPQF >gi|307679193|gb|GL457054.1| GENE 35 33198 - 34280 1325 360 aa, chain + ## HITS:1 COG:BS_ysdC KEGG:ns NR:ns ## COG: BS_ysdC COG1363 # Protein_GI_number: 16079934 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Bacillus subtilis # 8 358 10 359 361 450 60.0 1e-126 MDAKEEKMLIDLTSAKGIAGNEDEVRSLFKKYAAPYADKFLYDGLGSIIAKNVGDKEGPK VYISGHMDEVGFMVTQITEKGFLKFQTVGGWWGQVMLAQQVQIKTTTGKVYHGVIGSKPP HVLTAEVRNKPYEIADMFIDIGASSDQQVAEWGIHPGDMVTPYIDYRRMNDTKFLLAKAW DNRIGTAVSLKVLENLATEGHPNILFAGSDVQEEVGLRGAQTSTHLVNPDIAFALDTGTA GDTPGMTPKEADSVLGEGPQILIYDASMIPHKKLRDFVIQVAEENNIPFQYTVITGGGTD AGRMHLTRNGIPSLAITVPVRYLHSHTSVIHEDDYFNTVKLVTEVVKRLDKETVAKLTSY >gi|307679193|gb|GL457054.1| GENE 36 34301 - 35092 779 263 aa, chain + ## HITS:1 COG:no KEGG:EF2743 NR:ns ## KEGG: EF2743 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 263 1 263 263 432 99.0 1e-120 MKSLVTNSQHRANARRALDGQWGIMAWLTFLGVVLQSFLTSIVQNLFSGENQVFQSSFAA VLLQIFVLFALSYALYYAALKVLRGEKVRVNILMSVFQGKYYGPLFVVNLLQKVLERVIG LLFLLPILFGAGTTLYFKLMFNTVTPEEIQTFFLNDFSFFLAFGVATILIFLIGLFVSGV FQFAVWLRFDNPELPIMMALKQALYLMKNRFWQYLCLQFSFIGWYIVGFLAIGIGLLWVI PYNYVALASFYQTALEEKGLAEE >gi|307679193|gb|GL457054.1| GENE 37 35238 - 35978 1064 246 aa, chain + ## HITS:1 COG:SPy0208 KEGG:ns NR:ns ## COG: SPy0208 COG1234 # Protein_GI_number: 15674406 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Streptococcus pyogenes M1 GAS # 1 240 1 249 259 268 57.0 6e-72 MKLTVLGCLGAYPYKGEGTSSYLLESEGFHLLIDAGSTTLVRLENYLDPLKLDAVILSHY HHDHIADLGVLQYYRQLYPTLEPTPILPIYGHTQDQMHFKELTLPNVSEGKEYFEAEELA VGPFLITFMETIHPVTCYAMRIVEKATGKVFVFTGDSGYLASFEDFAKDADLFLADTYLF EGNERHHAHFTSREAGEIAKAAQVKQLMLTHLPQHGSLEQLREEAQNYAGTEIPVTLAQP DLTVEI >gi|307679193|gb|GL457054.1| GENE 38 36011 - 37015 1194 334 aa, chain + ## HITS:1 COG:lin0931 KEGG:ns NR:ns ## COG: lin0931 COG0095 # Protein_GI_number: 16800002 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Listeria innocua # 1 334 1 331 331 403 61.0 1e-112 MIFVPNENNDPRVNLAIETYLLTEMPLDEPILLFYINEPSIIIGRNQNTIEEINKEYVDE HGIHVVRRLSGGGAVYHDHGNLNFSFIMPDDGNSFRDFAKVTQPIIQALHDLGVEGAELK GRNDLVINDMKFSGNAMYATNGRMFAHGTLMFDSDIDEVVNTLKVRKDKIESKGIKSVRS RVTNIKPFLSEDKQEMTTEEFRQEILLKIFGVDSIDQVKTYELTDQDWAAINKISEQYYR NWDWNYGKSPAFNLERRHRFPIGSIEMKMNVADGAIQEIKIFGDFFGLGEIKDVEDILTG VKYDKASLEEAIDQIDVKKYFGNIEKEDLLGLIY >gi|307679193|gb|GL457054.1| GENE 39 37628 - 38317 799 229 aa, chain + ## HITS:1 COG:SPy1391 KEGG:ns NR:ns ## COG: SPy1391 COG4122 # Protein_GI_number: 15675315 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Streptococcus pyogenes M1 GAS # 3 227 10 233 235 226 52.0 3e-59 MRNEMMHRPVVKPELVEYMRTKQKKLPGELGAVEAEANEAGVPIIPHETVVFLQFLLGQL KPKNILEIGAAIGFSSSLMAQFVGEDGHVTTIDRFDVMIKKAKKTYQRLDLEEKVTLLEG QAAEILPTLEGPYDFIFMDSAKSKYIEFLPECLRLLPVGGVLMVDDVFQAGTILDPAEEV PKKNRAIHRKLNQFLDVVMAHPDLTSTLVPLGDGVILITKEKETIILDS >gi|307679193|gb|GL457054.1| GENE 40 38558 - 39121 711 187 aa, chain + ## HITS:1 COG:TP0509 KEGG:ns NR:ns ## COG: TP0509 COG0450 # Protein_GI_number: 15639500 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Treponema pallidum # 2 187 3 188 188 237 55.0 1e-62 MNLINQKIFDFECDAYHDGEFTRVSTEDILGKWSIFFFYPADFSFVCPTELGDMQEHYAH LQELNCEVYSVSEDSHYVHKAWADATETIGKIKYPMLADPNGQLARFFGVLDEASGMAYR ASFIVSPEGEIKSYEINDMGIGRNAEELVRKLEASQFVAEHGDKVCPANWQPGEETIAPS LDLVGKI >gi|307679193|gb|GL457054.1| GENE 41 39218 - 40900 1918 560 aa, chain + ## HITS:1 COG:FN1984_1 KEGG:ns NR:ns ## COG: FN1984_1 COG0492 # Protein_GI_number: 19705280 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Fusobacterium nucleatum # 3 315 2 315 332 355 58.0 9e-98 MTEEIYDLIIIGGGSAALSAGIYAGRAMMDTLIIEKDKIGGQVTTTSEIVNYPAIRHTTG PELMEEMRIQAQDFGVAFTKDEIIDVDFSQTIKTVQSASQTYQAYAVLIATGASARKIGF PGESEFTGRGVAYCSTCDGEFFQGLDIFVIGGGYAAAEEAVYLTRYGKSVTMIIREPDFT CAKLTAEAAKNHPKIKIVYNTEVKEITGDDFVRKAVFVNNQTGEETVYEAPKDSTFGLFV FAGNKPSTEIFEGKIALDRGYVPTTENMETNIPGVYAAGDLRIKELRQIVTAVADGAIAA THAQRYVTEQKTQAGQSIVTKRMTERLANQSAPETSSQQPKEKQPAKVTGKHQWFPESMR QQLSGIFAKLTKKVTLLQFLDASDEKSLELQSFLTEFASLDQKITLETILKDTEPAKELL YGIEKMPSVVLLDAAGNYTGIKFSGIPSGHEVNSLVLAVYNVGSEGQPLEASLQKNILAL PKRKIEIFVSLTCHFCPDVVAACQRIASINPHVEAEMVDISLFPELKKEKKIMSVPAMLI DGEQMIFGSKTMTEIIEALA >gi|307679193|gb|GL457054.1| GENE 42 41000 - 41590 233 196 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256616760|ref|ZP_05473606.1| ## NR: gi|256616760|ref|ZP_05473606.1| predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis ATCC 4200] hypothetical protein HMPREF9500_01531 [Enterococcus faecalis TX0017] # 1 196 1 196 196 285 100.0 1e-75 MYSILYLFTDSLKNAWRSKNQFSTLILIFIISFLTFSALLLTLLFSRWLSQMILLDNYAV IPPLTIFRGLAGISAGTLFFFLISYICRTFFLTFLEQKNDLLILALLGTTKLQILISYAL QPIYYLIFILPLAAFLANKLIQQFIHDFFSEVPGLMHIDSYMQGIFLPLTGSLLFICCCV FLILFRKLNSLIKRDT >gi|307679193|gb|GL457054.1| GENE 43 41711 - 42244 540 177 aa, chain - ## HITS:1 COG:CAC0738 KEGG:ns NR:ns ## COG: CAC0738 COG0847 # Protein_GI_number: 15894025 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Clostridium acetobutylicum # 1 159 1 158 306 128 43.0 6e-30 MNFYAFDFETASYDKHSACSIAIVKVENSRIVDEFYTLIKPETPFFWRNTQIHGIHESDV VNAPKFPEVWQQIQHCFQPNRLVVAHNASFDCSVLAGCLDYYGLEQPNYLSLCTVKTSRK LFPEFPNHKLNTVCENLNITLNNHHDALEDSRACAEILLQQEQRFGVEPLKKLVLVK >gi|307679193|gb|GL457054.1| GENE 44 42278 - 43033 818 251 aa, chain - ## HITS:1 COG:FN0047 KEGG:ns NR:ns ## COG: FN0047 COG0708 # Protein_GI_number: 19703399 # Func_class: L Replication, recombination and repair # Function: Exonuclease III # Organism: Fusobacterium nucleatum # 1 251 1 251 253 385 73.0 1e-107 MKCISWNVNGLRAVVKKNFMDVFNELDADFFCLQETKLQAGQIDLELPGYHQYWNYAEKK GYSGTAIFAKEEALSVRYGLGIEAHDQEGRVITLEYPEFFMVTCYTPNSQAELKRLAYRM TWEDAFRAYLNELNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEERQKFTELLDS GFTDTFRYFYPEAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDILGS DHCPVEVVLDF >gi|307679193|gb|GL457054.1| GENE 45 43240 - 44154 937 304 aa, chain + ## HITS:1 COG:lin1972 KEGG:ns NR:ns ## COG: lin1972 COG0673 # Protein_GI_number: 16801038 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Listeria innocua # 1 298 2 298 301 191 36.0 1e-48 MKIGVIGLGNIAQKAYLPTYSECRHLAEFVLATRNPETRQKIADQYGFTETVGTIEELIE AKIDACFVHVATKVHGAVVRQLLQAGIHVFVDKPLSEELAEVKELQALAVAKNLRLMVGF NRRFAPYTEVLKNIPEKQTIFIKKNRINTTRETSFMMYDLFLHVVDTAVYLAEGPLHVVQ SKLVEENGHLKRAILQLETEQTTIVCSMDLHSGANTETFEVTSPTGTYRLENLTHLTIQT EEEYQVKEMGDWTPTLEKRGFYQMVTAFIQAIQKPQEQELKQEKVYESHALCEEMLRQQQ RHVL >gi|307679193|gb|GL457054.1| GENE 46 44226 - 45128 1348 300 aa, chain + ## HITS:1 COG:lin1459 KEGG:ns NR:ns ## COG: lin1459 COG0812 # Protein_GI_number: 16800527 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Listeria innocua # 13 299 11 297 298 335 59.0 6e-92 MNTKAMLETLNEITLLVDEPLKNVTFTKTGGPADVLALPKTKKEVEEIVAYCREQGLSWL VLGNASNLIVRDGGIRDVVIMLTEMKEIKVAGTTMIVDAGAKLIDTTYEALAADLTGFEF ACGIPGSVGGAVYMNAGAYGGEIKDVFQSAEVLLADGTIQTMTKEDLNFRYRHSEIQELH CIVLQATFALEKGNHAEIKAQMDELTELRELKQPLEYPSCGSVFKRPVGHFTGKLIQDAG LQGLKWGGAQISEKHAGFIVNIDHATATDYVELIAHIQEVIKEKFDVELQTEVRIIGEEV >gi|307679193|gb|GL457054.1| GENE 47 45911 - 46441 378 176 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315032582|gb|EFT44514.1| ## NR: gi|315032582|gb|EFT44514.1| hypothetical protein HMPREF9500_01525 [Enterococcus faecalis TX0017] # 1 174 4 177 250 320 99.0 2e-86 MKKLICLATLILFGTIIVPSVTVLAEDTSSVSSDGITEGETFSSNESAPVFDTFVEKSTE VINISSYEDTGSGEEVKTVIGEDDVVLATKINDTENNQTLSVVNTGENIIVQKSILLEDG TYQVETETSPIIGSFDSEKEKIQDYNPLQRIYNGPWTYTHLAVGRNVFATIVDIWD >gi|307679193|gb|GL457054.1| GENE 48 46432 - 46656 92 74 aa, chain + ## HITS:1 COG:no KEGG:MGAS10270_Spy1771 NR:ns ## KEGG: MGAS10270_Spy1771 # Name: not_defined # Def: hypothetical protein # Organism: S.pyogenes_MGAS10270 # Pathway: not_defined # 1 74 141 214 214 67 44.0 1e-10 MGLGSWIGYFASLFRISRAAADFVFGYMGARGISAGERLAKIFDSNGNGWVALYKRGVYR YKGAPLIGYQHRTF >gi|307679193|gb|GL457054.1| GENE 49 46680 - 47033 117 117 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315162104|gb|EFU06121.1| ## NR: gi|315162104|gb|EFU06121.1| hypothetical protein HMPREF9513_01405 [Enterococcus faecalis TX0645] # 1 117 1 117 117 142 96.0 8e-33 MRRLFFYWINYTLLILFIVMVILGVVQLAVKKESEITFYTTFFGIIFGISFMSAYYANKK SNRMFFLLTTFLLMYVPKKIVDYLNIPLLKISVANYFIVLFGILILIFFQKYIKRQT >gi|307679193|gb|GL457054.1| GENE 50 47111 - 47749 794 212 aa, chain - ## HITS:1 COG:lin0562 KEGG:ns NR:ns ## COG: lin0562 COG0517 # Protein_GI_number: 16799637 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Listeria innocua # 1 210 1 210 211 254 61.0 1e-67 MLLKSVVIKKDNLTTVNESCTLEEALSILEDSGYRCVPILDESGKIFRGNIYKMHIYRHK ANGGDMSLPVTYLLKNATKFIYVNTSFFKVFFTIKELPYIAVLDENNYFYGILTHSTLLN ILAQSWNVKQGSYVLTIASVGQQGDLAAISKIIAKYSSIASCITLDVDSEEFVRRTLITL PAGTTAETCTAIVEHLERKNFKVVELENLEDE >gi|307679193|gb|GL457054.1| GENE 51 47962 - 48084 69 40 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MREPQTEQARAAFFVAMFFDLLYSQIYFLTVPLFEKVVKV >gi|307679193|gb|GL457054.1| GENE 52 48035 - 48187 267 50 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29377208|ref|NP_816362.1| ribosomal protein L33 [Enterococcus faecalis V583] # 1 50 1 50 50 107 100 4e-22 MATKKAALACSVCGSRNYSKSVSEGKRGERLEINKFCKYCNQYTLHKETK >gi|307679193|gb|GL457054.1| GENE 53 48208 - 48378 316 56 aa, chain + ## HITS:1 COG:no KEGG:EF2730 NR:ns ## KEGG: EF2730 # Name: secE # Def: preprotein translocase, SecE subunit # Organism: E.faecalis # Pathway: Protein export [PATH:efa03060]; Bacterial secretion system [PATH:efa03070] # 1 56 1 56 56 87 100.0 1e-16 MKFFRSVADEMKQVTWPTKKQLRKDTLVVIETSILFAALFFIMDTVIQTAFGWILK >gi|307679193|gb|GL457054.1| GENE 54 48503 - 49048 766 181 aa, chain + ## HITS:1 COG:BH0118 KEGG:ns NR:ns ## COG: BH0118 COG0250 # Protein_GI_number: 15612681 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Bacillus halodurans # 5 180 2 178 178 218 62.0 5e-57 METFERNWYVLHTYSGYENKVKANIESRAQSMGMGDYIFRVVVPEETEKEVKNGKEKEIV HKTFPGYVLVEMIMTDDSWYIVRNTPGVTGFVGSHGAGSKPAPLLQEEINHILRSIGMST RQSDLEVALGDTVKIIEGAFSGLEGVVTEIDEEKQKLKVNIDMFGRETSTELDFEQVDNI D >gi|307679193|gb|GL457054.1| GENE 55 49168 - 50046 978 292 aa, chain + ## HITS:1 COG:lin0949 KEGG:ns NR:ns ## COG: lin0949 COG4814 # Protein_GI_number: 16800018 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Listeria innocua # 34 292 41 298 300 184 37.0 2e-46 MKHAQKYCYFSLLMGLVLLLSACQIGATMKNDNQAATKEATVELNRTTTPTLFFHGYAGT KNSFGSLLHRLEKQGATTQELVLLVKPDGTVVKERGALSGKATNPSVQVLFEDNKNNEWN QTEWIKNTLLYLQKNYQVNKANIVGHSMGGVSGLRYLGTYGQDTSLPKIEKFVSIGAPFN DFIDTSQQQTIETELENGPTEKSSRYLDYQEMINVVPEKLPILLIGGQLSATDLSDGTVP LSSALAVNALLRQRGTQVTSQIIKGENAQHSQLHENPEVDQLLIEFLWPSKK >gi|307679193|gb|GL457054.1| GENE 56 50139 - 50861 383 240 aa, chain - ## HITS:1 COG:no KEGG:EF2727 NR:ns ## KEGG: EF2727 # Name: not_defined # Def: phosphosugar-binding transcriptional regulator, putative # Organism: E.faecalis # Pathway: not_defined # 1 240 1 240 240 428 98.0 1e-118 MNLDYLKETYHLTKTESQILYYLDQQSTNAADLSIREVAKHCFSSPSSIIRLAKKLNLSG YNELIYKLKEAHFSQPIPFETAPSFETTNEFCQLLAKHKSHLFVILGHDFSRHLAAYISE VFNFHGIPSITTAHTHSINSQNNQNFLFIILSHSGEEKYLKETALLAKEKKHSIISFVGA KNSTLGRLADLVFSTDSYSPFSTSVAQPQMFFGQTLITFEALICAYLNHEDSIPISPKNK >gi|307679193|gb|GL457054.1| GENE 57 50939 - 52567 1709 542 aa, chain + ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 30 533 41 550 559 365 39.0 1e-100 MKRATKQRLSLAAIMVLLLSGCGSVGKETKKQEQQVLRVGIDSELSTADVSLAMDNTAAD VMSQVGEGLFSFDEKGEAKPALATEKVQPSNDGLSYTFTIRKDAKWSNGEPITANDFEYS WKRTVDPKTASPQAYYFEGLKNYRAIVDGGKSKEELGVTAIDDHTLEVELSYPMSYFQQL LAVPAFYPLNEAFVEKTGKNYGTSAESTLYNGAFTLEGWDGTNNTWSYVKNKNYWDQANV SLDKVDVQVVKEVNTGKNLFEGKELDVVKISGEIVAQEQGNAALKIREIPGTYYIQLNTQ KDLLANKNARRAIALSLNSERLAKNVLNDGSKKALGFVPTGFTNQETQKDFAEELGDLNP SEPEKAKELWQTAKKELGIEKAELTILSSDTENAKKISEYVQGALADNLENLTVNVSPVP FNNRLEKSRSGDFDIVVGGWTPVYADPIDFLNLLQSKNSNNFGKWSNKTFDQLLQEANVT YANKYEERWKTLQKADQLVAEEAPLVPLYQLTEARLVADSVQNLVYGPLGSGYYKSVSIS DK >gi|307679193|gb|GL457054.1| GENE 58 52581 - 53684 987 367 aa, chain + ## HITS:1 COG:BH3132 KEGG:ns NR:ns ## COG: BH3132 COG1363 # Protein_GI_number: 15615694 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Bacillus halodurans # 5 357 6 358 361 216 34.0 4e-56 MKKSQAVQLIQELSNANGVSGFETEVVRILQHATADFTIQRLDAIKNLYLEKKNNISEGP IVLFDAHSDEVGFMIQAIKENGLLRFLPLGGWVPNTISAQKVRIRNREGTYLPGVVTSRP PHFMTPEERQRPLTIADLSIDIGATSKEEVIETYKIDLGAPVIPDVTCCYNEQTDLFLGK AFDCRIGCACLVDVMEELKEETLPFKLVATVTAQEEVGERGALIAAKQVNPDLAIVFEGC PADDTAETPEMIQSAMGKGPMLRYFDVSMITNPEFQEYALEIAKIHKIPVQVSVRSGGGT NGMAITQVQGAPTIVVGIPVRYAHTPHCYVDFQDYQAAKELVIQLIKNLDADKIQALVQP LSKEWNK >gi|307679193|gb|GL457054.1| GENE 59 53681 - 54526 942 281 aa, chain + ## HITS:1 COG:PH1582 KEGG:ns NR:ns ## COG: PH1582 COG2362 # Protein_GI_number: 14591360 # Func_class: E Amino acid transport and metabolism # Function: D-aminopeptidase # Organism: Pyrococcus horikoshii # 1 281 1 274 278 122 28.0 9e-28 MKIYVSCDIEGLAGIATFDMEKEDTVLFRELYHQHVAWLIEGIQQSAKNEQITEITIADS HSRGLNLAYARLAEMDERISLVSGFPRMDYMMSGLDSSYDVVFFLGYHAGIGKQKGNMDH GYSASVAYDLKINDLAMNETTINAAYASELGVPVGLIIGESGLEEQLFQEKMMSKVPFVS TKESLGRYAIKNRPMQQVREAIVATTSQVLTSFALSELPRYTLQTPATVKLQCVTTAQAD RIEMLPMIKRIDGRTVSFVGETMKDVMNGIVAVVGLGGTSY >gi|307679193|gb|GL457054.1| GENE 60 54591 - 55463 1215 290 aa, chain - ## HITS:1 COG:L44083 KEGG:ns NR:ns ## COG: L44083 COG1760 # Protein_GI_number: 15672813 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Lactococcus lactis # 1 286 1 286 287 331 65.0 1e-90 MFYSIEDLVAQAKDYPSVSELMIATEMAHGGYSRERIIETMEKNLAVMKQSVAEGIAGVT SVTGLTGGDATRLNDYIHSGNFLSGETILQAVRNAIAVNEVNAKMGLICATPTAGSAGVV SGVLLAVIDRLKLTHQQQLDFLFTAGAFGLVIANNASISGAEGGCQAEVGSASAMASAAL VAASGGTPDQSAQAVAITIKNMMGLICDPVAGLVEVPCVKRNALGSSQAFISADMALAGI RSVIPPDEVIHAMYQVGRQMPQIFKETAEGGLAVTPTAQRLSKEILEKQK >gi|307679193|gb|GL457054.1| GENE 61 55486 - 56154 664 222 aa, chain - ## HITS:1 COG:L43452 KEGG:ns NR:ns ## COG: L43452 COG1760 # Protein_GI_number: 15672812 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Lactococcus lactis # 1 222 1 223 223 291 61.0 8e-79 MEELRFNSVFDIIGPVMIGPSSSHTAGAARIGKVVRSIFGQQPDSVDIYLYESFAKTYRG HGTDIALVGGLLGMEPDDEQLANSLEIAYEQGMEVCFIPKSEKADHPNSVKIVVSSGDRK LSVTGISIGGGNIQISELNGFKLSLSMGTPTFIVVHQDVPGMIAKVTNILSASDINISTM TVTRESKGEKAIMIIEVDQAEVGDIVMQLAEIPHIYSVNYFD >gi|307679193|gb|GL457054.1| GENE 62 56532 - 58028 1552 498 aa, chain + ## HITS:1 COG:L119564 KEGG:ns NR:ns ## COG: L119564 COG0488 # Protein_GI_number: 15672881 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Lactococcus lactis # 1 497 1 511 513 483 51.0 1e-136 MSKIELKQLSFAYDNQEALLFDQANITMDTNWKLGLIGRNGRGKTTLLRLLQKQLDYQGE ILHQVDFVYFPQTVAEEQQLTYYVLQEVTSFEQWELERELTLLNVDPEVLWRPFSSLSGG EKTKVLLGLLFIEEKAFPLIDEPTNHLDLAGRQQVAEYLKKKKHGFILVSHDRAFVDEVV DHILAIEKSQLTLYQGNFSIYEEQKKLRDAFELAENEKIKKEVNRLKETARKKAEWSMNR EGDKYGNAKEKGSGAIFDTGAIGARATRVMKRSKHIQQRAETQLAEKEKLLKDLEYIDPL SMDYQPTHHKTLLTVEELRLGYEKNWLFAPISFSINAGEIVGITGKNGSGKSSLIQYLLG DFSGDSEGEATLAHQLTISYVRQDYEDNQGTLSEFAEKNQLDYTQFLNNLRKLGMERAVF TNRIEQMSMGQRKKVEVAKSLSQSAELYIWDEPLNYLDVFNHQQLEALILSVKPAMLVIE HDAHFMKKITDKKIVLKS >gi|307679193|gb|GL457054.1| GENE 63 58151 - 58573 679 140 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29377197|ref|NP_816351.1| ribosomal protein L11 [Enterococcus faecalis V583] # 1 140 1 140 140 266 99 7e-70 MAKKVEKIVKLQIPAGKATPAPPVGPALGQAGINIMGFTKEFNARTADQAGLIIPVVISV YEDRSFTFITKTPPAAVLLKKAAKIEKGSGEPNKTKVATVSSDQVKEIAELKMADLNAAD VEAAMRMVAGTARSMGIIVE >gi|307679193|gb|GL457054.1| GENE 64 58685 - 59374 1156 229 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29377196|ref|NP_816350.1| 50S ribosomal protein L1 [Enterococcus faecalis V583] # 1 229 1 229 229 449 100 1e-125 MAKKSKKMQEALKKVDATKAYSVEEAVALAKDTNIAKFDATVEVAYKLNVDPKKADQQIR GAVVLPNGTGKTQTVLVFAKGEKAKEAEAAGADFVGDDDMVAKIQGGWFDFDVVVATPDM MATVGKLGRVLGPKGLMPNPKTGTVTMDVTKAVEEVKAGKVTYRVDKAGNIHVPIGKVSF DNEKLVENFNTINDVLLKAKPSTAKGQYIKNISVTTTFGPGIHVDQASF >gi|307679193|gb|GL457054.1| GENE 65 59697 - 60197 787 166 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29377195|ref|NP_816349.1| 50S ribosomal protein L10 [Enterococcus faecalis V583] # 1 166 1 166 166 307 100 2e-82 MSEAAIAKKETLVQAAAEKFESAASVVIVDYRGLTVEEVTNLRKQLRDAGVEMKVIKNSI LSRAAKKVGLDGLDEVFTGPTAVAFSNDDVVAPAKIIDEFAKDAKALEIKGGVIEGKVSS VEQITALAKLPNREGLLSMLLSVLQAPVRNVAYAVKAVAEKNEEVA >gi|307679193|gb|GL457054.1| GENE 66 60260 - 60628 571 122 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29377194|ref|NP_816348.1| ribosomal protein L7/L12 [Enterococcus faecalis V583] # 1 122 1 122 122 224 100 2e-57 MALNIENIVAELETATILELSELVKAIEEKFDVSAAAPVAVAGPAAGGAAEEQTEFTVEL TAAGDQKVKVIKAVREATGLGLKEAKAVVDGAPAPVKEAVSKEEAEALKAALEEVGASVT VK >gi|307679193|gb|GL457054.1| GENE 67 60681 - 60782 110 33 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIVLLLICQSRQLNFIDILLAVVVLAKDNYRLL >gi|307679193|gb|GL457054.1| GENE 68 60982 - 61812 666 276 aa, chain - ## HITS:1 COG:BH2229 KEGG:ns NR:ns ## COG: BH2229 COG2207 # Protein_GI_number: 15614792 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Bacillus halodurans # 6 275 2 279 287 98 28.0 1e-20 MQNVFTNNVSILINDQPISQEFHLYEAGYEKCRPTKPTEFAPINYWVLHYCSDGEGYFST PFMEKQHITAGDLFMIPANCRNIYYPNRQNPWTYHWVGFVGDLSSQYLEKIGLTTENCIL KGTVDKKLESLFKNIYQEAKKHNHFGSLSESFQLLNYLEHHSVTQHENQSQQLFNQIKMA IHENFSNNLSISQLASEYNIDRSYLFKLFQRYEQTNPSIYVQNLKLQKACSLLRKSSLTI TEISFEAGFSSPSYFSKFFFQKKEMTPRQYRQQFLT >gi|307679193|gb|GL457054.1| GENE 69 61961 - 63460 1618 499 aa, chain + ## HITS:1 COG:ECs3960 KEGG:ns NR:ns ## COG: ECs3960 COG0531 # Protein_GI_number: 15833214 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli O157:H7 # 1 478 1 457 477 338 41.0 1e-92 MATHSRERLGSVALMLMTFSAVFAFPSIVNNSIQIGLATIPGYLFGSIFYFLPFILMIAE FASANSENESGVHSWLESVLGPKWAFLGAWSYFFVNLFFFCSLLPNTLIYGSYAFLGQNV FQGNHSTKIIAVISILLFWLMTWVCIKGVSWISKVTSLAGGARLFMGVAFVVLAFVVVFG FGNEPAQEFTTTSIMPTFNWTFFMTMAWILQAVGGGESIGVYIKDVKGGNKTFVRTMIGA TIAVGIMYILGAVAVGLVVPTDVLKGNFSNGIFDIFKILGTYFHIPAAMMVRLVGIILFV GSLGSLALWTAAPVKVFFSEIPDGVFGKWLVKTNEEGNPTNALLVQGIIVTILVAIPALG IGNMDSFLETLINMTASTSLVPVLFLLIAYIGLRWKKETMPRSFRFGNRTFGLIAGIFLL AIFIFVFFMSTVPDPKLIMEEINGTLPKGTASPLGMLAYNIIGLIVFMGFAWICWKRYET KEKNEVGKGEMDYEDLGKL >gi|307679193|gb|GL457054.1| GENE 70 63438 - 66515 3332 1025 aa, chain + ## HITS:1 COG:ECs3958 KEGG:ns NR:ns ## COG: ECs3958 COG3250 # Protein_GI_number: 15833212 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Escherichia coli O157:H7 # 1 1015 13 1023 1042 737 38.0 0 MKTWENYKVDSINRLPGRAHFSSFPSKKTALLNENKYTQAYKNLNGRWHFLFLEAPEYSP ENFFATDFDTSQMDQITVPGNWQVQGYGKMHYSDLWYNFPINPPYVPTENPTGIYKRTFA IDETFHDKKIILRFCGVDSAYHVWVNGHEVGYSKGARNEAEFDITSYAKIGETNDLTVRV YQWSDGTYLEDQDMWWLSGIFRDVELLGVPENGLEDFFIISDLDDSYQNGHLAITGKFWQ DKGQQVQLELMDQQGKTVLKETVAGNQGKVEFSASLPSVTAWSAEKPYLYQLFITVFSEG EVVEVIPQKVGFRNIHVSGETFLVNGVAIKLKGMNRHDYNPKNGRVVSREEIEKDIRLMK QFNINAIRTSHYPASAYFYDLCDEYGMYVIDETDLECHGFELTGEYDWISNDPEWETAYV SRMVRMIQRDKNHPSILFWSLGNESAFGHNFIEMARIAKEMDPTRLVHYEGDFEAEVTDV YSTMYTWLEHPTRELLMNTIIENSKKPHILCEYCHAMGNGPGNLKEYQELFYAHDKLQGG FIWEWFDHGIESVTDSGEVYYRYGGDFGDDPSNKDFCIDGMLMPDRTPSPSLYEYKKVIE PITTSAIDVLSGEFSLLSRFDFENLAIFKLVYTITEDQTVIQSGTVAVPAIAARAEGRLH LPYHLDFPKKAGAAYYLTLSYQLKETTAYASAGHELATAQFELPIATPGIEITPVGTMMA KEIGPHLYIEGPNFSINFDKVKGALTNVTRDGKKLLHKGPKFTFWRAPISNDMEIIDEMK KKYFLHLEHEIVRSFEWKKVDDFIQVIVKTINGTTNSAWHYQCTYQYLIAPNGEIFFDLK GSPAGKIENAPDMLPRLGVTLHLDKSLSEVKYFGKGPRENYVDSQEAGLLGVYDATVAEM FTNYVVPQANGNHMATKWSAFTDDRGQGVVATAADSYNFSVSYFEEQALDVAKHTNELQE SEYVVLNIDYKQNALGSYSCGQWQLEKYRTTFEEFQLAFRLTPFNNKEIQAADVAHERVK RPTIS >gi|307679193|gb|GL457054.1| GENE 71 66696 - 66944 441 82 aa, chain + ## HITS:1 COG:L144047 KEGG:ns NR:ns ## COG: L144047 COG2261 # Protein_GI_number: 15673874 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 4 82 2 80 80 77 73.0 7e-15 MHTLWVLIVGAVIGAIAGALTSKGQSMGWIANIVAGLVGSFIGEKILGSWGPHVAGMAIV PSIIGAVILVAVVSFFFGRKNS >gi|307679193|gb|GL457054.1| GENE 72 67151 - 68521 1603 456 aa, chain - ## HITS:1 COG:lin1815 KEGG:ns NR:ns ## COG: lin1815 COG2265 # Protein_GI_number: 16800882 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Listeria innocua # 1 456 1 457 457 523 56.0 1e-148 MTQQLVKKGQQISLKIKRLGINGEGIGYYKKLIIFVPGALPKEEVTATITNVTPKFAEGT LQSVKKAAKDRVVPPCPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYEL RKTIGMENPWNYRNKAQFQLRQIDGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLV DLLNDFQLPIYDERKNSGIFRTLMVRVGIQTGEVQVVFITQSQKFPQKEKMVRAINEQLP EVVSIMQNVQNKKTSLVMGDDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYN EGIKVLDLQPNETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNT HYAVGTAEDLLPKWFKEGFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLA RDLVQLAKVYQVDYLQSVDMFPQTARCEVVVKLTRK >gi|307679193|gb|GL457054.1| GENE 73 68653 - 69453 924 266 aa, chain + ## HITS:1 COG:BS_yfhG KEGG:ns NR:ns ## COG: BS_yfhG COG2137 # Protein_GI_number: 16077919 # Func_class: R General function prediction only # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 261 1 263 264 132 34.0 6e-31 MTTITRISKDKGEFYLLWLSSGEKLRVSEDILVRQRLLKGQELSDTLIEEIKKASSYDVG LQMAMNYLSYQLRSKKEIFTYLKEKEIEPEDRVKIVQRLEELRLLDDAIFSESYVRTAMR TSDKGPRNVAQQLKQKGISEEDIQHGLTFYTLDEQLNVATATAEKAMKRYRTKSFKDALQ KTRLHLMQKGFTNEIIDLALESLAFEKDEEQEQQALNKEGERLWRANQRFDFSKKVQKVK QSLFQKGFDYDLIQQFISEKEVEHDE >gi|307679193|gb|GL457054.1| GENE 74 69443 - 70627 1228 394 aa, chain + ## HITS:1 COG:SP1228 KEGG:ns NR:ns ## COG: SP1228 COG1194 # Protein_GI_number: 15901090 # Func_class: L Replication, recombination and repair # Function: A/G-specific DNA glycosylase # Organism: Streptococcus pneumoniae TIGR4 # 10 389 2 373 381 363 48.0 1e-100 MTNKEPWEAWSPEKVSSFQEDFLAWYEREKRNLPWRANTDAYRIWISEIMLQQTRVDTVI DYFYRFMEWFPTIQDLAEAPDDKLLKAWEGLGYYSRARNLKVAAQQIVSEFGGKMPDTIE DIRSLKGIGPYTAGAIGSIAFNLPEPAIDGNVMRVVSRLFEIDADIAKASSRKVFEAAML KIIDRERPGDFNQALMDLGSAVCTPTSPKCESCPLQQYCAAYQADKMTAYPVKSKKVKPK DVYYVGTIIENNKQEFLLEQRPETGLLANMWLFPIEEISKKQFQQLQKLAQPVETEKQLT LELAPVTEPLVAEEPVSFFTDYETVVWQKRALGEVVHIFSHLKWHILVFYGRNTGELATL ESQRWVAAQQFSDYVFPKPQQKMVELFKKEHKNK >gi|307679193|gb|GL457054.1| GENE 75 70808 - 71932 1068 374 aa, chain + ## HITS:1 COG:lin2662 KEGG:ns NR:ns ## COG: lin2662 COG1316 # Protein_GI_number: 16801723 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 3 309 17 333 349 156 33.0 6e-38 MSRKRKISLISLVIILVFVTVGSAYFAVAGSYLKKTIDKGYVPIKNDYNEAQNKDSQSFL IMGLDNTIERKLGTTRTDAMMVITVNNKTKKITYLSLPRDSFVQIDAKNYQGMQRIEAAY TYDGPTASVNTVEKLLNIPINHYVVFNFLSFIKLIDAVGGIDVNVKQAFDGVTKDGPGSI HFDAGKQHLDGTKALSYARERHSDNDIMRGFRQQEIIQAVEDKLKSGQSIMKIMDIIDSL NGNIQTDVDSNELTHLVKEGLTWTNYDKQQLSFDWRTFSNEGRSMVELYPDSIENVRHQL RVSLNLEKPDERDQDGYVFHTNGEFLYQSDYTVQDEAAEENELTSINGNTYIGVPGNTQT GPLPSVKTGNGFIK >gi|307679193|gb|GL457054.1| GENE 76 72124 - 72555 533 143 aa, chain + ## HITS:1 COG:no KEGG:EF2702 NR:ns ## KEGG: EF2702 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 143 1 143 143 272 100.0 3e-72 MFSYTDTILSIMQRIEVYNEIFKAISKEVQEYGCNQAAHRRGRDTYMFCRNNVNRFFTEE MMFRKNLEPYYDKEATKILLEGLDTYKEGVFFWLEALSESCQVTDELKYQLGIRQKESSY LLINQACKEACEGIQSAHSVHKM >gi|307679193|gb|GL457054.1| GENE 77 72600 - 73124 764 174 aa, chain - ## HITS:1 COG:L36177 KEGG:ns NR:ns ## COG: L36177 COG0454 # Protein_GI_number: 15674159 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Lactococcus lactis # 3 173 2 167 169 127 39.0 1e-29 MTVYLRKAEPSDLPDILAIIEDGRRTLQKSGIPQWQNGDGPNQEILAKDIDQQTCYILMV EDALAGVGVLCSEIDPAYEAIFNGSWQPHSQTTYTAIHRVALKSSFQGQGLALVLLRSLV TAARLQGATDIRIDTHPQNLAMQHLIKKAGFVYQGDVILDVNDGERYAYQMILK >gi|307679193|gb|GL457054.1| GENE 78 73141 - 73962 910 273 aa, chain - ## HITS:1 COG:CAC1777 KEGG:ns NR:ns ## COG: CAC1777 COG1051 # Protein_GI_number: 15895053 # Func_class: F Nucleotide transport and metabolism # Function: ADP-ribose pyrophosphatase # Organism: Clostridium acetobutylicum # 34 265 25 294 307 125 33.0 1e-28 MPQFASKAEEKNYYERQASLAEFLTWYHQQELPEYEKPSLTVDMVLLCYNKEADQLKVLL IQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLHSFSRPDRDPR GWVVTVSYLAFIGEEPLIAGDDAKEVHWFNLERHGQHITLSHEDVEITLDLKTAASLGKD TLAFDHSEIIIKAFNRVVDKMEHEPQVLQVLGKDFTITEARKVFAKFLGVDYRSIDHSNF KKAMTQYFEELGERPVGIGRPSKIYQLKTTTGF >gi|307679193|gb|GL457054.1| GENE 79 74152 - 75339 1606 395 aa, chain - ## HITS:1 COG:lin2081 KEGG:ns NR:ns ## COG: lin2081 COG3853 # Protein_GI_number: 16801147 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in tellurite resistance # Organism: Listeria innocua # 1 393 1 398 399 375 62.0 1e-104 MTEQQPKETTSATNTLDDLLSNPFSSMDELTPTQQNELSELKEQQSAPRLIDKLPQERQA QAKELASKIDVQDSQAVITYGSNAQIKLGEFSQAMLNHVQAQDIGPVGDSLTDLMFRLNE ANPNELRAGEGNFIQKMLGKVKQSVYEITAKYQKIGAQIDKIAVKLTHEKDGLLKDNAML DQLYQKNKDYFDALNIYIAAGELKAEELRTQIIPEAMKKAEESGDQMDVQIVNDYNQFLD RLEKRTHDLRLARQITIQQAPQIRLIQNTNQALAEKIQSSVNTAIPLWKNQVVIALTLLR QKDAVTAQRQVSETTNDLLKKNSEMLKISAIETAKENERGLVDIETLQKTQNDLIETIQE TLRIQQEGKEKRQAAEIELGHMEEDLKNKLLELTQ >gi|307679193|gb|GL457054.1| GENE 80 75359 - 76039 771 226 aa, chain - ## HITS:1 COG:lin2080 KEGG:ns NR:ns ## COG: lin2080 COG4915 # Protein_GI_number: 16801146 # Func_class: R General function prediction only # Function: 5-bromo-4-chloroindolyl phosphate hydrolysis protein # Organism: Listeria innocua # 71 226 62 217 219 88 28.0 1e-17 MNKLNTKLLIGYILLGALIIAVAREYGFFAFVILVGFLVFVLYRKKKNAADKSDQMPYLT KDKEAHYRELGLSPQEIDFFRSTMSTAKKQIIQLQENMNRSTKLRAIDLRNDTTKVSKAL FKELVKEPKKLHLANHFLYTHLPNIVDLTSKHLEIEQHEVKNKQTYEKLEESAQIIDQLS KLVKNDYEEIVSDDLDDLDVEMSIAKSSLSQKAATEESPQVNEDQQ >gi|307679193|gb|GL457054.1| GENE 81 76442 - 77026 563 194 aa, chain + ## HITS:1 COG:lin2079 KEGG:ns NR:ns ## COG: lin2079 COG0494 # Protein_GI_number: 16801145 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Listeria innocua # 5 185 2 180 185 181 54.0 5e-46 MLNYEDFEEKTLQRREIFKGKIIDVFLDDVALPTGGTAKRELVFHSGAVAMIPLTAEGKI VLVKQFRKPLEQVILEIPAGKIDPGEENQLETTAMRELEEETGYRAGQLTYINSMYLSPG FANEKLALYLATDLQKVENPRPQDEDEILELYELTIAEAKAEVAKGTICDAKTLFAIQYW ELYLLQRQFKEDTQ >gi|307679193|gb|GL457054.1| GENE 82 77023 - 77319 375 98 aa, chain + ## HITS:1 COG:no KEGG:EF2695 NR:ns ## KEGG: EF2695 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 98 1 98 98 103 100.0 2e-21 MSKGPLVTRTELRKRREAEEKEAERRQQEEQKLAEKAYKRKEKEISTFYRKEKKKQKPIN KSRVGEYSKRRERSTWLNKAIIIVAILLAVVAYIVLNL >gi|307679193|gb|GL457054.1| GENE 83 77335 - 78030 1010 231 aa, chain + ## HITS:1 COG:L132777 KEGG:ns NR:ns ## COG: L132777 COG0775 # Protein_GI_number: 15673862 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Lactococcus lactis # 3 231 36 259 259 217 53.0 1e-56 MKIGIIGAMDQEVKILKEKLTDTMSWERAGALFVSGSLGRHEVIVVRSGIGKVASAVTTT LLIHQYGVNMVINTGSAGGIGEGLKVGDLVIADKLAYFDVDVTGFGYAYGQLPGGVPLYF ETSEYLRMEIAKAAEKTGLAIRKGLIVTGDTFVDSAEKIAKIKKEFPEALACEMEGAAIG QAASQFNIPFLVVRAMSDTADGEATQSFDEFIDEAGKKSAEMVIHFVENLV >gi|307679193|gb|GL457054.1| GENE 84 78097 - 78363 283 88 aa, chain - ## HITS:1 COG:lin0209 KEGG:ns NR:ns ## COG: lin0209 COG2827 # Protein_GI_number: 16799286 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease containing a URI domain # Organism: Listeria innocua # 1 84 1 82 90 83 64.0 1e-16 MENKKSHYFYVLLCQDGSFYGGYTTEPERRLTEHNSGTGAKYTRLAKRRPVKMIHTEKFE TRSAATKAEAAFKKLTRKQKEQYLKTFH >gi|307679193|gb|GL457054.1| GENE 85 78353 - 79087 854 244 aa, chain - ## HITS:1 COG:SPy1411 KEGG:ns NR:ns ## COG: SPy1411 COG4123 # Protein_GI_number: 15675331 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 243 5 247 258 280 55.0 1e-75 MLLSGERIDQLYADDIQIIQSKEVFSFSIDAVLLANFPQLPKKGKIVDLCAGNGAVGLFV SRKTAAKIDQIELQPRLADMGQRSILLNKLEKQVTMYERDLKQATEVIKKDSVDLVLCNP PYFKERPTSQKNPNPHLAIARHEIHTSLQEVVTVSADLLKTNGRLAMVHRPDRFLDILHA MENANIAPKKARFVYPKPGKEANVLLIEGIKQGKKDGFRVLPPLFTYNEKNEYEAEMKAM LYGE >gi|307679193|gb|GL457054.1| GENE 86 79276 - 79902 831 208 aa, chain + ## HITS:1 COG:SP1624 KEGG:ns NR:ns ## COG: SP1624 COG0204 # Protein_GI_number: 15901460 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 195 1 196 249 244 57.0 8e-65 MFFTFMRGVVRVILFVINGNAHYENKEKLPKDQNYVLVAPHRTWWEPLYLAVAGSPKKFS FMAKKELFKNPVLRFILKHANAFPVDREKPGPSAIKTPVKILKNSDLSLIMFPSGTRHSS ELKGGVALIAKMGRVPIVPSVYQGPLTLKELFKRKKVTVRFGEPIDISDIKKMDKDGLAE VERRMQEAFDQLDKEIDPTFKYESTEKE >gi|307679193|gb|GL457054.1| GENE 87 80086 - 81222 983 378 aa, chain + ## HITS:1 COG:L0327 KEGG:ns NR:ns ## COG: L0327 COG0420 # Protein_GI_number: 15673304 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Lactococcus lactis # 1 378 1 390 390 264 41.0 2e-70 MKFLHTADWHIGKKLHGFDLLAEQREAFKQILAIAKEEQVDAVVIAGDLYDRSVPAVEAV EIFNEMMIQMNLKEHFPVLAISGNHDSSTRLETGGPWFNQTQFHLNTRLEQAFQPIEIDN TQFYLLPYFEPIAARLYFEDETIRTIQAAMEKVVAKMQESFLPNKKQVLVSHFFVAGSEK TDSETKLTVGGLDVVPTALLEPFDYVALGHLHGKNALQAPNARYSGSPVKFSLSEMTQEK GVWLVETEAEVHFQFRALKPLRDIQQLTGSFQQLTDPAFYQEVNRENYLHVQLTDRAIIP NMMNQLRKIYPKIIGLERLNGRETSNGNQKKVVQIEQRSPEEHLHDFFNDVTGEALTEQQ AQWVQEELSTLNQLERGK >gi|307679193|gb|GL457054.1| GENE 88 81227 - 84364 3472 1045 aa, chain + ## HITS:1 COG:L152588 KEGG:ns NR:ns ## COG: L152588 COG0419 # Protein_GI_number: 15673303 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Lactococcus lactis # 1 1040 1 1041 1046 308 28.0 5e-83 MKPLSLTLKNFGPYINEIIDFTKFEDSSLFLISGKTGSGKTTIFDGMSYALFGESSGKLR LGKEMRSTFADPSEATEVTLLFKHNEYLYELNRLPEQELFKKRGTGVRKQSAKISLIVKD AQGKELRSYSKRREVDELIQELLHLNANQFAQIVLLPQGEFRTFLIAKSDEKEKVLRNLF GTELYQLFSENLKERLKIANQEIQETQQKIELKTEQLHWSEEPEPTMTLFEKLQLLESQQ QEAQQQLLVEREQIATLKQAKQAKEQVRYAIEERQNLQQQKEELLEKKAKQVEQETVIER LKEQIQQLKWSQKQQSLAEKVFEKRSEKQQKEQETKSKQQALMETQQALTDWQAIMSELE EQQPLIAEKQERLQTIQRQLPQYQEYEQLAQQQIAEQANYQAIQKEYESCQQEKITLADK VATAKQFIEQEGTLEKANFECSSVADHWQNFVERWQKNQKAWQKISQNQVELHELTQRFA VEQQQKSAEEAKLQTKKSQWASLQIQRLSLLLEEGEPCPVCGSLEHPKQQTHQEVSLEEI DQAERELTEVEKTVQRFTETLSALGAEKQQKESQLQEQEAAYTEEQEQLAAQFADLQLPL TGLTFSQVTPAEIAEVESQLAKEKQQIAQKLTEISVEKDRLAELEEQVAENSQRFEVLRQ QVETMQQSLERITIQQQMIASQLLDATVTYEEMTKQQALLQEELSAFERQKENVTTQGET LKKEEMILESTLTHLEKEQQTLQQTVAQLESQLNAVLTEQGVTEDQLTEWLKEVPTLESQ QEQIALFEQEQTQLTIQLAEIEKKLSSDTFPELSLITTEIEQITQQIEEQEKKYYQLHEK MLNNQQLVQEINAQRTTIEDKFEEVAALQQLADTVNGNNPKKISFERYMLQTYLERVLTV ANQRLDRLTNSRYQFELNHEAGSYRNQTGLEINIYDDNSGTVRSAHTLSGGESFIAALAL ALSLAEVIQEQAGGVLIDALFIDEGFGSLDEEALEMAMEALETIENEGRMIGIISHIGEL KARIPQQLQIKSNGNGQSTVHYQLA >gi|307679193|gb|GL457054.1| GENE 89 84384 - 87581 3509 1065 aa, chain + ## HITS:1 COG:lin1685 KEGG:ns NR:ns ## COG: lin1685 COG0553 # Protein_GI_number: 16800753 # Func_class: K Transcription; L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicases, SNF2 family # Organism: Listeria innocua # 5 1063 12 1065 1072 638 35.0 0 MKWSIPERIVEQGREYMQEGRVLSIVQNPEKRIWLSEVLGEELYLVELDGTAKEQDVCEC QYWMEHGYCKHTVAVELALKQRGVSRIIQANQTVSFEKTNRSTAEMFTKGFAKLSKASAE VPLQPLRLEFHLDVIETNNYYPELSTIGLSLKIGLEGTKPKTYIVKNIGDFLQAYEKEMT FMVNKQHQFTLLHDSFSMEIQEILTELAAIYHTSQLLGANGIQVKGKIDKRYLLLPIDRS QSLVEKMNRTGQFILTNQTHKYRYLTFKETSLPLTFTVQKTEEQSFKLTIQNPITTFLAH YHWAIADQTVYLLTEEQEAIYTTLLQLMKRLEEPSIIYEKETVSDLFSEVLPLLEKIGRV SVEESVEELVVHHPLKAVFIFKKIKGRINARIDYHYGEVIFSTNPKYAQLPEVNQEIVRD KAKETAIKQQFQQFAYQQTTTGFEKVLPAGESLYYFFKAEVPAFRQLGEVRMGRKLRELY LDAQHHQPTIEVAEGDSWLDIRFDVTGIDETEIDAVLTSLLRNDAFYTLKSGEILAFDSE EFFHTSAILTKLRKNMHQEDNVIHVPKNQGLMIESLLEDNERAHFSDSFKKMVTDLTHPE NFEAQVPKTLQATLRHYQETGYKWLKMLSHYQFGGILADEMGLGKTLQTITYLLSEKEEE CLKGTALIVAPASLTYNWLAEVKRFAPTLNVQVVSGNRQERAALLQNSTEDILITSYASM RQDVQLYQEMRVGYLILDEAQMVKNSGTKTAQALKSLKVPQRFALSGTPIENNLDELWSI FQMILPGLFPGKKAFREIKPEEIAKMIQPFILRRDKKTVLADLPEKIENNMYSVLTEEQK TVYLAYLKQMQADVSQMDQATFKKNRMSILAGLTRLRQICCDPRLFIEDYTGGSGKVEQV KDFLVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFNEG EKDVFLISLKAGGTGLNLTGADTVILYDLWWNPAVEEQAAGRAHRMGQKKVVEVWRMIAE GTVEEKMNSLQQEKRELFQKVIQGNEEQLAKMTEEDIRTILSIGE >gi|307679193|gb|GL457054.1| GENE 90 87631 - 88554 889 307 aa, chain + ## HITS:1 COG:no KEGG:EF2687 NR:ns ## KEGG: EF2687 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 307 1 307 307 530 99.0 1e-149 MKQKEYMEYRPLGEEIERIRKGKNIPLRVFDENGVSSRSYQRFVQGNSELRISDLAIIVE ILSISPMEMTEKLTPMSKTVLAKEQFNQAIFSKNFQESSRIVADYRAYYDKSSFALGKQE VMYSMLALEYLFNPQTVVTKEEIIALENQILERLINADVYTIFNLKFIALQKNVGLQPFP TSLLFRVLQSVNEREIIDIRSLEIIEQVIIDFLFAAIVSQNVPHILHVLSMFKEYEVGEN NWRMILWKKIAEKIEMILTNEEIFADWSIFKEQILLSITLFLPKAKQEFFAGQLEKIEDS LKEIKEN >gi|307679193|gb|GL457054.1| GENE 91 88744 - 90915 1979 723 aa, chain + ## HITS:1 COG:lin0372 KEGG:ns NR:ns ## COG: lin0372 COG4886 # Protein_GI_number: 16799449 # Func_class: S Function unknown # Function: Leucine-rich repeat (LRR) protein # Organism: Listeria innocua # 110 473 39 384 656 165 33.0 3e-40 MKKMCISAVSALLLGNSLLLPVTTFAETTETIASSSEENVSSVSEEKIPETSSAEEQNSA TSSSEIPQSEELTTVETSEEPPNEALAITEAQLMMPQLYAGAVLDKATPISTLFPDPAFA ENIRKQLSKSRTSNTVTQAELDKLNKVILENVVVSNVEGVQYLRNLEELSFQDSLNVTDL SPFAKGEFKLLRFLYMRNNKIADLSPLGQAGLINLEGLYVENNQLTTLNGLEGMAALKNL SIQNTTDHPSKITPNNRVTSFDPLRSLRNLETIWAANNQIATLDGLTEANNLLRLYVENN QLKTIAPLANKPRLEELSIMNQTIASLEALSTVPNLRVLYARNNQISSLAPLEKTLNLTV LDVGENQISDISPLKGLTAITGLDVSNQMIILSSVDYIAGKPLQLKNKVVSRDGQLFPPL TISPYGSYDATKGLFEWNLPKAHEGVSYIWESTDKAYLGNFSGTVVQPVKEVFLSETKLS WSKERIEKSMEKTIDIDDFQKTALPFYWQDVDAGNRLQFIVKKEGQEIQKLADETTTNSK TFKEKALLLPELTYGKQQLVVEVYDKGYKIDELALTVTVVGSVRFKTVPTAISFGNELQI ASSTTQYPIVSMDQPLVIRDTRQTGNNWSLALTVTSDFKSESGATLPNILKFRTNHRLQD IPEGQSILVHNQVNGHQETNISDQWKENDQELLLSVPGGTAKAEEYEAKLTWHLMDVPDG SAK >gi|307679193|gb|GL457054.1| GENE 92 90952 - 91287 152 111 aa, chain + ## HITS:1 COG:no KEGG:EF2685 NR:ns ## KEGG: EF2685 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 111 12 122 122 199 97.0 3e-50 MLLGLISSVDVFAETNAYPTNTEVSFYGEYESPANKEKPDGKIPQRFPKQSEAIPAVSGE SLKHSTSKTVDQKGSGFLPRTGTKQQQMFNYLGIIVIFMASFILKKRKKEQ >gi|307679193|gb|GL457054.1| GENE 93 91289 - 92071 948 260 aa, chain + ## HITS:1 COG:no KEGG:EF2684 NR:ns ## KEGG: EF2684 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 260 1 260 260 437 99.0 1e-121 MKKIILSTIPAITLGVAIAPEVNAEEKNYESNAIVEFTPDTSINKPVDPVNPDTEKPVEP FDPTTPDTGNKPNEGTTGPLSIDYASSLDFGKNKISNKDEKYYANPQYFFLADGSGPDLT NPKPNYVQISDKRGTNAGWALTVKQETQLTATKETLNKVLDGSEIKLSQNKAVSNSKAVT PTAHEVTLVAGDSSNVMSAAEGQGSGTWLSAFGGIEKVEVDGESVDKNTAITLTVPGATP KDAVQYKTVLTWTIADLPSV >gi|307679193|gb|GL457054.1| GENE 94 92111 - 92887 1056 258 aa, chain + ## HITS:1 COG:no KEGG:EF2683 NR:ns ## KEGG: EF2683 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 258 1 258 258 446 100.0 1e-124 MKKMTIASSLILATIAVGTLPVQAEEVANRDTDAIVKFKAPDEKDPNSKNPVVDPEDKDG KDPVTPIDPVNPDKPVDEGSTGPLTLDYASSLNFGENIISTKDEIYFASAQVLKDKNNVE KTGPLFAQITDNRGTLEGWTLSAKQNSAFTSATKGQTLEGTEIVFQNASAVTAGQSAAPT SLASVTFGTVGESHNVMVAATDQGAGKWSYLYGNASSIAEVDGRQVMKDVQLKVPGKSVK LNDAYKTTITWTLANTPV >gi|307679193|gb|GL457054.1| GENE 95 92962 - 93909 954 315 aa, chain + ## HITS:1 COG:no KEGG:EF2682 NR:ns ## KEGG: EF2682 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 286 1 312 341 469 91.0 1e-131 MKNRYFILMILSFYFFAFGIETSAAELRFSVETEIPENQIDKTKTYFDLMMKPDQEQILK VRAANSTDENLVIDVSVKSATTNSNGVIEYGESLTALDKSAPADLSEIIQLKDGGESVEL PAKSEKVDETKDKQKENTNGLAIENRYAYTVAVLLRENETVVQPELSLEKVEPTQRNARS VISATLLNHEAAYLQSMKVTANVKNKKTNNVILEKEQEDMQMALNSIFNFPIPYEENEME AGTYVLAMTVEGSGKKWQFTKEFTISKEEAKTFNEKDVTVKKTESKLIYLLIGLLLLLLI ICLFIILRLKKQKNK >gi|307679193|gb|GL457054.1| GENE 96 93946 - 94659 563 237 aa, chain - ## HITS:1 COG:SPy0596 KEGG:ns NR:ns ## COG: SPy0596 COG1011 # Protein_GI_number: 15674680 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Streptococcus pyogenes M1 GAS # 4 237 5 238 300 273 55.0 2e-73 MRTIVFDVDDTLYDQQQPFRNAMTKIFPNVATEDMHELYLRFRHHSDETFPKVLANEWSL DFMRFFRMNETLKDLNYPGISQEEGKIFQQVYEEELDNITMHPEVTKLLDTLQEKEIPMG IITNGPTDHQFKKVKQLNLEKWVPSQNIIISQSTGFQKPEKEIFDLACNQFCMEPEHTLY VGDSYDNDIVGARNGGWHSLWFNHRSRELPSCQPASHLAEVTCFTELCPTVEKLFNL >gi|307679193|gb|GL457054.1| GENE 97 94835 - 94921 97 28 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKYSDNEKFVKMILSQSYLNNTCSERS >gi|307679193|gb|GL457054.1| GENE 98 94987 - 96702 246 571 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 347 560 36 255 329 99 32 1e-19 MLKRFFGYYRPYRRLFILDFGCAVFAGLLELAFPVAVNQVIDKIMPKGDFRLIALASAGL FAFYIINTFLQFIVVYFGHMLGVNIETDMREELYQHLQTQPFEYYDNQKTGKLMSRLTTD LFEISEVAHHGPEDVFITIMTLAGSFLLMLTIHVKLAIATFILLPFITIALGYFNKKMTK ANTDIYDNLGEFNAGIEASVSGIRVTQSFANEPFERKQFNYLNQMYRKSKLYFYKVMGVS SAYNYLLIRLINLFSLIFGAYYTIKGEITEGQFVGFILLANIFIRPIEKVNNMIESYPKG FAGFKRFTEEMDKQPSIKDLPGAVAVSHLEGTIAYKDVSFAYEDGTKVLDHINLKIQPGE TVAFVGQSGSGKTTLCNLLPRFYEVSSGEITIDGRNIQQMTLASLRKQIGIVQQDVFLFP GTLRENIAYGNLNATEIDIQQAVKLAHLEHVIQLMPDGLDTIIGERGVKLSGGQKQRVAI ARMFLKNPPILILDEATSALDTETEQVIQESLNSLADGRTTLIIAHRLATIKHADRIIVV SDQGILEDGTHETLYAQRGHYRRLYDAQFRT >gi|307679193|gb|GL457054.1| GENE 99 96746 - 97756 1076 336 aa, chain - ## HITS:1 COG:lin2301 KEGG:ns NR:ns ## COG: lin2301 COG0180 # Protein_GI_number: 16801365 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Listeria innocua # 2 336 3 331 331 466 70.0 1e-131 MKTIFSGIQPSGTPTIGNYIGAMKQFIELQNEYNCYFCIVDEHAITVPQEPQKLRQQIRS LAALYLAVGLDPQKATIFIQSEVSAHAEAGWIIQCNTSIGELERMTQFKDKSQKNGRAGV SAGLLTYPPLMVGDIVLYNADLVPVGDDQKQHLELTRDFVERFNKRYAQKNQEILTMPEV KIAEQGSRIMSLQEPTKKMSKSDTNVKGFISMLDEPAVIRKKIRSAVTDSTGVIEYNKEE KPGITNLLNIYSAATGQTVEELVQAYEGKGYGDFKADLAEAVVALLEPIQVRYQELLASE ELDMILDEGAENARQVANKTLQRMKNAVGLGRKVRR >gi|307679193|gb|GL457054.1| GENE 100 98116 - 98514 421 132 aa, chain + ## HITS:1 COG:lin2295 KEGG:ns NR:ns ## COG: lin2295 COG1393 # Protein_GI_number: 16801359 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Listeria innocua # 1 129 1 129 131 194 79.0 3e-50 MLTLYTSPSCTSCRKARAWLQEHEIPFKERNIFSEPLNIEELKAILIMTEDGTEEIISTR SKVFQKLNMDLDELPLQDLLELVQENPGLLRRPIMIDEKRLQVGFNEDEIRRFLPRDVRQ LELRQAQLMAGL >gi|307679193|gb|GL457054.1| GENE 101 98857 - 99519 894 220 aa, chain + ## HITS:1 COG:lin2294 KEGG:ns NR:ns ## COG: lin2294 COG4862 # Protein_GI_number: 16801358 # Func_class: O Posttranslational modification, protein turnover, chaperones; T Signal transduction mechanisms; N Cell motility # Function: Negative regulator of genetic competence, sporulation and motility # Organism: Listeria innocua # 1 218 1 217 217 91 30.0 1e-18 MEMEHINENTIRVLIGNEDLADRGITFLDLLGNHKDVENFFYSILEEVDVEDEFQGSEAV TFQVLPKNDGLELFISKNVAMDDLSSLEGLSEVNADVSELIRKQIEADKAAADELDEMEA TDETNRNVIFELDNFEAMIQLSKEVFMQSVLTNLYTYNDRYYLQVLFLTDELEKTNVDNE IAQILEFAHKTTVTQDTLVEYGTCIMERSALELTRYYFND >gi|307679193|gb|GL457054.1| GENE 102 99608 - 100786 667 392 aa, chain + ## HITS:1 COG:L168238 KEGG:ns NR:ns ## COG: L168238 COG4469 # Protein_GI_number: 15673710 # Func_class: R General function prediction only # Function: Competence protein # Organism: Lactococcus lactis # 1 267 1 258 329 155 38.0 1e-37 MLTALTADNQELFSLIDCSIDELTQIRSEQAFVCPMCHQSVILKAGPIKIPHFAHRKKNS CWYEAEAETEEHLRLKQLFAEKCLREKLSFQVEAYLPALKQRPDLLIGKIAIEIQCSPLP IKRLVERTETYQAHGYQVVWILGERLVPKDKLTQLTKQFLYFSESLGFYLWTANKKQERI ELLCHIEESQCQQFYRRKQSWAFYEKKLLEIFRLPTANLNLLPDRRHTGQLMHDYYQKLT QQLGYRNAQLLRTQSFLYTKGCHLLQLPPWFYYPGLKLIPSSEEDIHLKMLVWEALKTEE ERLVTKQELWRILEAVFLEEGNFVWQPLPNIGLKKLFKIVGNNLLRWLQECYVLIKVNNK YLITSIFLREDPEKLIHWLKKVKKQHFFSHTC >gi|307679193|gb|GL457054.1| GENE 103 100834 - 102645 2206 603 aa, chain + ## HITS:1 COG:lin2292 KEGG:ns NR:ns ## COG: lin2292 COG1164 # Protein_GI_number: 16801356 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Listeria innocua # 1 601 1 601 601 667 57.0 0 MSEIKQLPTRDEVPTPLTWDLTKIFKDDAAFDVAYNQLTEELNQAESFKGTLGNGAEAFL AALEYVLDVYRKVETLYVYSHLKNDQDTTNTAYQALYARASSLYAQVSEAVSWFDPEVLT LSDEQIWGYFEEQPKLAVYRHYIQNILDERPHVLSMEQEALLAGASEIFGASSNTFSILN NADLEFPTVQNAEGETIQLSHGVYGQLMESVDPSVREAAFKGLYKVYKQFRNTLASTLGA HVKTHNYKAKIRNYDSARAASLASNHIPESVHETLVAVVNKHLPLLHRYVKLRKKLLNVE ELHMYDLYAPLLGEAPIRYSYEEAKEKAIEALKPLGEDYLSIVKEAFSSRWIDVIENQGK RSGAYSSGAYDTAPYILMNWHDSLDQLFTLVHEMGHSVHSYYTRNNQPYVYGDYSIFLAE IASTTNENILTEYLLQTETDPKVRAYVLNHYLDGFKGTIFRQTQFAEFEHFIHTEDAKGT PLTSEYLSEYYGELNAKYYGPEVVRDEEISYEWARIPHFYYNYYVYQYATGFSAASALSK HILAGEEGALENYLNYLKAGSSDFPIEVMKKAGVDMTQAAYIEDAMKVFEERLTELEALV EKL >gi|307679193|gb|GL457054.1| GENE 104 102836 - 103555 554 239 aa, chain + ## HITS:1 COG:SPy1834 KEGG:ns NR:ns ## COG: SPy1834 COG1396 # Protein_GI_number: 15675661 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 99 1 100 195 71 38.0 1e-12 MNIGNSLKMRRNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSNLYEMTLDR LLKEDNTMVEKLSKDIREGQKYKKLFLILLIIVLCIGGYFTILQLRLNNFYSGVKEWNQN GQTYNLIEDNIQYHVVKIDNYNLFTIPEELELMSSYISENEKFNMYYSGDDSNIKIYWTT GALNGLELSFDKEFIFDNVNQRNKFSYEIQELINKNLDKDKKELTILYKQTKNKWEEIN >gi|307679193|gb|GL457054.1| GENE 105 103838 - 104497 748 219 aa, chain - ## HITS:1 COG:lin0963 KEGG:ns NR:ns ## COG: lin0963 COG2761 # Protein_GI_number: 16800032 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis # Organism: Listeria innocua # 2 165 17 181 272 75 32.0 5e-14 MVEIYLFVNPLGGVCLEIEKEIIQLSVNDKKKIQLRFIPLLNMKTINEFLSRQHIPINDI KRRNRIFEDLYSAALDYKAAQLQGRKKGRQLLIGLQKAVAEDGLAYSPELSEELLLAAGG DIDMYRKDRQSDFVKESFQTDQKVAREMGIKQHPTAVVYNYTCENDFGILVENFENMDEI KQLCRVHPHNEPLLSQDDATFEFKRRSNYHFPNGHLHLL >gi|307679193|gb|GL457054.1| GENE 106 104561 - 105139 672 192 aa, chain - ## HITS:1 COG:lin0964 KEGG:ns NR:ns ## COG: lin0964 COG4116 # Protein_GI_number: 16800033 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 185 1 184 194 134 41.0 1e-31 MSEHLEIEFKTLVSPQDFKRLIDHFAIQKTDFFTQTNHYFDTDDFQLKAQRMGLRIRVLA DRGELTLKVPAPEGLLEINDPLSLETANHFIKRNHLPTEGAVAKKLQELGIEIASIHLIG SLKTARAEKQIPQGLLALDESWYNQQHDFELELEVTEAESGKQAFQTLMADLNIPITLAP NKIQRMMRTTAP >gi|307679193|gb|GL457054.1| GENE 107 105336 - 106010 669 224 aa, chain + ## HITS:1 COG:lin0966 KEGG:ns NR:ns ## COG: lin0966 COG2357 # Protein_GI_number: 16800035 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 5 205 4 204 222 263 72.0 1e-70 MEREWELFLAPYEQAVSELKVKLRGIRKQFREQDKHIPIEFVTGRVKPVDSILTKTAIRH IPLNRIEEEMQDIAGLRIMCQFVEDIYQVVALLRNRKDLKIVEERDYIENKKESGYRSYH VVVEYPVQLVTGEKIILAEIQIRTLSMNFWATIEHSLNYKYQGVFPEEMKERLQRAAEAA YLLDEEMSSIREEIQEAQHYFSHGRGLLENEYYKQIKNETPENQ >gi|307679193|gb|GL457054.1| GENE 108 106023 - 106820 721 265 aa, chain + ## HITS:1 COG:L166614 KEGG:ns NR:ns ## COG: L166614 COG0061 # Protein_GI_number: 15672345 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar kinase # Organism: Lactococcus lactis # 2 264 6 268 270 268 52.0 9e-72 MKVAIVHNSEEKSKQVTKQLTTLLEQNQIQIDNRQPELVISVGGDGTLLSAFHRFNHLLN EVSFLGVHTGHLGFYTDWRDYELKELVESLCIHREKSTSYPLLDVRIRFRDGKPDKHFLA LNESTIKRGNRTMVGDVFIKDELFERFRGDGLSISTPTGSTAYNKSIGGAVLHPSINAFQ LTEIASLNNRVFRTLGSPIVIAHTEWLEIKLQESDDYFVTVDQLDIYQENIASVCYRIAD ERIHFASYRHMHFWHRVKDAFIGED >gi|307679193|gb|GL457054.1| GENE 109 106828 - 107721 261 297 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 39 285 41 279 285 105 30 2e-21 MEFQWTYDKETTQQVKYFLKEQGVSKGLLAKVKFQGGKIQVNGTVQNAIYPLQTGDVVKM TIPDEAEHETLLTDDEPIEIVFEDDHFLVVNKPAGIASIPAQYHPSGTMANRVKGYYKRQ NYVNQVIHVVTRLDRDTSGLMLFAKHGFAHALIDQELREKKVTKIYYALVGGAIEQLNEH QLIEKPIGRDLSSLLKRQVIETGQFASTEYWLAKRGAQAAAVRIQLHTGRTHQIRVHFEA IGCSLLGDEMYHGEMDQGIERQALHCMELIFTHPFTKETVHLISPLAEDMKSVDDTL >gi|307679193|gb|GL457054.1| GENE 110 107752 - 109113 1575 453 aa, chain + ## HITS:1 COG:SA0867 KEGG:ns NR:ns ## COG: SA0867 COG2239 # Protein_GI_number: 15926597 # Func_class: P Inorganic ion transport and metabolism # Function: Mg/Co/Ni transporter MgtE (contains CBS domain) # Organism: Staphylococcus aureus N315 # 2 453 6 461 461 408 47.0 1e-113 MNEGQEMEEQFALLLETLKNQQMNEFRELFLALHIYEQGQFYQSLDEKDRQHLYNYLSPK ELADMFDVIEEDNENMKDYLAEMRPSYAADMLAEMYTDNAVDLLNMLDKSQKAKYLSLLS SEEAGEIKELLHYEDETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ ENHLVGVISLRDLIVNDDDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYD DHLLGIVTVDDIIDVIDDEAASDYSGLAGVDVEEVSENPLKAASKRLPWLITLLFLGMST ASLISNYESLVSEASILAVFISLITGTAGNAGTQSLAVAVRRLAMKDEKDSNFGRLILSE VLTGLVTGAVTGLTIMIVVGVWQHNLPLGFVIGMAMLCAITVANLAGSLIPMLMDKLGFD PAVASGPFITTLSDLTSVLIYFNIASMFMRYFV >gi|307679193|gb|GL457054.1| GENE 111 109231 - 109860 841 209 aa, chain - ## HITS:1 COG:SP1260 KEGG:ns NR:ns ## COG: SP1260 COG3142 # Protein_GI_number: 15901120 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in copper resistance # Organism: Streptococcus pneumoniae TIGR4 # 1 209 1 209 210 225 53.0 4e-59 MIKEFCAENFTKIPQAIQKGANRIELCDNLAVGGTTPSTGVIEEVLAYAGEHSVPVMTII RPRGGNFVYNDIELKIMHTDLIEAKKLGTDGIVIGCLTEDGWLDEEALDLFIETAEGLQI TFHMAFDALSKENQFKAIDWLAERGVTRILTHGGPAGTPIEDNFDHLKELIAYADQRILI LPGGGISTENVQTVMDTLKVTEVHGTKIV >gi|307679193|gb|GL457054.1| GENE 112 109990 - 110835 711 281 aa, chain + ## HITS:1 COG:L55507 KEGG:ns NR:ns ## COG: L55507 COG0500 # Protein_GI_number: 15673975 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Lactococcus lactis # 1 280 1 273 273 231 45.0 1e-60 MLKKIERAQQLLKKEAAVFRCPTCHEPMHVEGVGLICQQRHQFDLSKKGTLYFLNHGVQT EYNKKMFTSRGKMIQSGMYAPVLNKIMYYLPQNKTVVDVGCGEGSFLAELSQAGLSGLKI GFDLSKEGIYLASNQPIDAFWCVADLTNLPFANEGLDTILNIFSPSHYQEFRRVLKADGT VIKIIPEENYLKELRAAFYPNDEKKQSYSNQKVVQRFAEELAVEVDERITYCFDIPEERR LDLLEMSPLEWQVSQEVKAKLQQRPLEKITIDVRLLVGRKR >gi|307679193|gb|GL457054.1| GENE 113 111149 - 111655 567 168 aa, chain + ## HITS:1 COG:SP0486 KEGG:ns NR:ns ## COG: SP0486 COG0219 # Protein_GI_number: 15900400 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase (SpoU class) # Organism: Streptococcus pneumoniae TIGR4 # 1 167 1 166 167 237 67.0 6e-63 MTNHIVLFEPQIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITY HKDLAAFLAHVAGKHLHLVTKFAHQTYSEVNYNDGEDHYFLFGKETTGLPETFMRENEEK CIRIPMNDEHVRSLNLSNTAALIVYEALRQQNFPNLELTHHYENDKLD >gi|307679193|gb|GL457054.1| GENE 114 111872 - 112516 762 214 aa, chain + ## HITS:1 COG:SPy0598 KEGG:ns NR:ns ## COG: SPy0598 COG0406 # Protein_GI_number: 15674681 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Streptococcus pyogenes M1 GAS # 1 208 1 205 207 159 43.0 3e-39 MKLYFTRHGKTEWNQQKRFQGMTGDSPLLPTSYDEIKQLGRYLQDIPFEKIYSSPLLRAK NTARGIQQELTHPVEIVYTDTLKELGLGRLEGQYIEEMRNFYGEELDHLRHRLDLYDPTI FDGEPIEQAIQRISETVAEAAKQHEGPVLFVGHGAALTAAIQAMAGKPLSELRTMGGLLN NSLSILETKEASRNMPYDLTLWNDTSFLAKEKAQ >gi|307679193|gb|GL457054.1| GENE 115 112543 - 115152 2972 869 aa, chain + ## HITS:1 COG:L180415 KEGG:ns NR:ns ## COG: L180415 COG0507 # Protein_GI_number: 15673722 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Lactococcus lactis # 10 860 3 824 834 727 49.0 0 MVTLFGEDEEKAFIVGTVQAIFFENPSNFYKVVLVNVTDTNTDYLEKEIVVTGSFGQVQE EEPYRFFGHFVDHPRYGRQFQVDSYQQERPTSASGVVNYLSSDKFPGIGKRTAEKIVEVL GESAIDRIIDDPSVLEEVTVLNEKKRQVIVETIRLNHGMEQVIVGLNRYGFGSQLAFSIY QTYQEETLSVIQENPYQLVEDIEGVGFKRADNIAEQIGIQADSAVRIRAAILHEVFEHSI RSGNTYVQADVLLEEAIRTLEASRPVEISPDQVANEIITLVEHGKIQQEETKLFENSLYF SEWGIGTSIQRLLSRKKEIHYEEEEVQKNIRMIEKRLNIQYGDSQQAAIEEAIKSPLFIL TGGPGTGKTTVINGIVSLFAELNGLSLDLKDYTQEMFPILLAAPTGRAAKRMNETTGLPA STIHRLLGLTGREKNPSLTAKELEGGLLIVDEMSMVDTWLANTLLKAIPTNMQVIFVGDK DQLPSVGPGQVLHDLLQINEIPKCELNEIYRQGDGSSIIPLAHEIKEGKLPADFQKNQKD RSFFASDIGHIEEYIRQIVTKAKAKGFTPQDIQVLAPMYRGAAGIDALNKMMQEIFNPNE GKKKEVKWNDTVYRIGDKVLQLVNTPELNVFNGDMGEIVGITLAKDSEDKVDELVLQFDN NEVTYKRNEWNKITLSYCCSIHKAQGSEFRMVLLPMVHQYSRMLQRNLLYTAVTRSKELL ILLGEVSAFETCVKNESASRMTMLKERIVNAEQMNLTTRTQLEAYEEGLTADHPFTEKET KAVSYETEQQSTKANQIKDTDEQLVDTTVQEVSLFADEGEESTPETANKATKVVEEPLPK EPRLTVEIIQTNAVDPMIGMKDTTPYQFM >gi|307679193|gb|GL457054.1| GENE 116 115219 - 116178 798 319 aa, chain - ## HITS:1 COG:L39484 KEGG:ns NR:ns ## COG: L39484 COG1597 # Protein_GI_number: 15673780 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Lactococcus lactis # 5 319 3 302 302 164 35.0 1e-40 MNIHYYLIINEQASSGNGRKVARKVIQQLKQQELKYTALYTDYAGHEKELTKELAETTLL PWSEDLDVSTFPILVVLGGDGTLHNVINSLLPYDSAIPLSYIPCGSGNDFARGVGLSRNI DKALHQILRTRRPKEIQTIHYVEANQEEIGLATNNVGLGLDAAIVEKTNESSSKKALNKF KLGSLSYISSIIHVFFKQKGFPILVEMNGKQYTFNRAFLCTVTNHPYFGGGVSIMPTANP RKAVVDLVVVERINIFKILWLIFLLLRQKQGKSKHFHHFQSSKIRIVSTIPQTIHADGEI LGKRSIDMVYTTQKRLFWF >gi|307679193|gb|GL457054.1| GENE 117 116441 - 116947 496 168 aa, chain + ## HITS:1 COG:lin0860 KEGG:ns NR:ns ## COG: lin0860 COG4708 # Protein_GI_number: 16799934 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 10 168 2 161 162 100 41.0 1e-21 MQNSFQANRKLRTVLANGIIMGLYIVLSLLVRPVSSGMIQFRISESLNHLVVFNRKLMWG VLGGVIFFNLFFGFGVMDALFGGAQTLFALSLTAFLQKKVPSIPVRMCLNSLFFTVSMFF IAFMLVPSGGQAFWATYGWLALSEAIIMTISAPIMYFINKSLKFETRI >gi|307679193|gb|GL457054.1| GENE 118 117185 - 118390 1384 401 aa, chain + ## HITS:1 COG:SPy1205 KEGG:ns NR:ns ## COG: SPy1205 COG2348 # Protein_GI_number: 15675170 # Func_class: V Defense mechanisms # Function: Uncharacterized protein involved in methicillin resistance # Organism: Streptococcus pyogenes M1 GAS # 5 401 9 404 407 327 44.0 3e-89 MYTFKIGIPAEVHDTFVKNHPLCNLLQSSSWAKVKDNWGSEIVGVYEKDTLVASSLVLIK PLPAGFTMLYTPRGPVMDYTNERLVSYFMAELKKFGKKKRALFIKMDPAVHYQDFHLGEE HQPHAEATAIIETLKEAGAKYQGLTMDMGATIQPRFQANIYREDFSEEQLSKSTKKMIKT AEKKGVVVQQGHVDFVDEFEKVIQSTMERQHISLRNSDYFKKLLNIYPEDSFIMLAQVNL KERLDSTRQRYDKNQKDLSNLKENQVKKRHNLEELDASLTRELKELEENIAEAGEIVTVA GALAVTFGPTSEILYAGLDDRYKRYMPTYVTWRDAIQECFNRGCESCNMGGLEGSLNDGL IKFKANFNPTINEFIGEFDLPVNKLLFKASEYAYKLRKQKK >gi|307679193|gb|GL457054.1| GENE 119 118446 - 119081 708 211 aa, chain - ## HITS:1 COG:CAC0331 KEGG:ns NR:ns ## COG: CAC0331 COG4684 # Protein_GI_number: 15893623 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Clostridium acetobutylicum # 1 205 6 192 192 89 33.0 6e-18 MNNTKKFTLTAMFLAILLLLALTPLGFITLGPLNSTTMHIPVIIGSIVLGPKIGSMLGGT FGIISLIKNTTAPTPLSFVFSPFIPVIGTDHGSWKALLIVLIPRILIGVVPYFAYKWLNK LTKEKAQPVSLFVAGVLGSATNTILVMNMIYFLFNSAYAEIIGKAGTAVYLAIIATIFSS GVPEALVAGVAASAIASVLLRLMKRNATQKL >gi|307679193|gb|GL457054.1| GENE 120 119085 - 119639 577 184 aa, chain - ## HITS:1 COG:SPy1222 KEGG:ns NR:ns ## COG: SPy1222 COG0452 # Protein_GI_number: 15675186 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Streptococcus pyogenes M1 GAS # 2 177 3 178 181 209 65.0 3e-54 MKTILLGVSGSISAYKAADITSQLAKLGYNVEILMTKSSTAFITPLTLQSLSKNPVHTDV MMEIDPSKINHIELAKKADLFLVAPASANTIGKLAHGIADDLLSTVALALYPETPKIIAP AMNTYMYQNPIVQRNIGILKEVGYQEIIPREALLACGDYGRGALATVEDILQTVMKILAS DNKE >gi|307679193|gb|GL457054.1| GENE 121 119636 - 120409 901 257 aa, chain - ## HITS:1 COG:SPy1221 KEGG:ns NR:ns ## COG: SPy1221 COG0452 # Protein_GI_number: 15675185 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Streptococcus pyogenes M1 GAS # 1 251 1 226 228 153 39.0 3e-37 MDVLVTAGGTSEPIDNVRSITNHSSGGLGKAIAESFLAAGHTVTYVTTKHALRPTQQLDL SIKEIETTVELATTLEQLFAEKQFDAIVHAMAVSDFTTETAQTEEQFIDSFAQQLSEQTL PKTKEALVTIVQNTLNQIADIPQTATKISSDTDRLLIFLKKNPKVIQMIRDKQPQTVLVG FKLLVDVSQEELVQVAQAALVKNRCDFVLANDLMNVHETEHEGLLINETGIVQEACSKQG IGSMIVKNVEKKWREQQ >gi|307679193|gb|GL457054.1| GENE 122 120425 - 121417 1398 330 aa, chain - ## HITS:1 COG:SAP008 KEGG:ns NR:ns ## COG: SAP008 COG0604 # Protein_GI_number: 16119208 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Staphylococcus aureus N315 # 4 329 2 323 323 313 46.0 3e-85 MNSFQAFTLREQDTSVIGQLETITLDDLSEGTVVIKAAYSSVNFKDSLASKKDGGVIRNY PMIPGIDVSGTVVTSEDPRFKEGDKVIVTGYQLGVSHTGGYSEYVRVPGDWVVPLPEKMS LKEAMIFGTAGFTAGLSVTALEDDGLRDDKEAPIIVTGATGGVATLSIAMLHQLGYTSIT ALTRKPDSFELLKELGVSECLLVEDFLATPVKALMKQRFAFAIDTTGGEITSAVLPQLRY DGRSAICGRAAGITLETTVLPFILRGVHLLGIDSVNVGMDKRKIVWQRLATDLDITEKAV YQEITLEELPPVFEALQAGQHIGRTIVRIS >gi|307679193|gb|GL457054.1| GENE 123 121681 - 122223 664 180 aa, chain + ## HITS:1 COG:lin0796 KEGG:ns NR:ns ## COG: lin0796 COG1396 # Protein_GI_number: 16799870 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 1 180 1 180 180 205 58.0 3e-53 MEIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEQ FFSQQPLEQKIVYNEEESTLYYDEEHGYELKWLIPASNEKEMEPVIITFDKNGEYKTFEP SLSETFIYVIDGSIRLTLGEATYIAKKGQTMYYQATEPHQISNNGRGKSRALIVATESYL >gi|307679193|gb|GL457054.1| GENE 124 122249 - 123334 1239 361 aa, chain + ## HITS:1 COG:lin0797 KEGG:ns NR:ns ## COG: lin0797 COG3842 # Protein_GI_number: 16799871 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Listeria innocua # 1 361 1 362 364 536 75.0 1e-152 MRNHVISFENVVKQFDDEPVLKNVSFEIEEGKFYTLLGPSGCGKTTILRIIAGFNDVTSG DVYFDGKRINDVPANKRQVNTVFQDYALFPHMNVFDNVAFGLKIKKLSKAEIEKKVKEAL RLVQLPGYETREISEMSGGQRQRVAIARAIVNEPKVLLLDEPLSALDLKLRTAMQYELRD LQQRLGITFIFVTHDQEEALAMSDEIFVMNKGHIVQSGTPVDIYDEPINHFVADFVGESN IVDGVMLEDNLVSFVGKKFECVDGGMRKNEPVEVVLRPEDLTITTLEKGKLTVTVDTQLF RGVHYEIICFDEQGNEWMVHSTRKAKEGAQVGLSFEPEDIHVMRFNESEEDFDARLESYD E >gi|307679193|gb|GL457054.1| GENE 125 123353 - 124159 791 268 aa, chain + ## HITS:1 COG:lin0798 KEGG:ns NR:ns ## COG: lin0798 COG1176 # Protein_GI_number: 16799872 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Listeria innocua # 2 264 3 264 269 347 73.0 1e-95 MKTMRRIYSIPYVMWLLLFVIAPVLMIIYQSFFDMNGQFTLANYQTYFTSGTYLSMTINS VWYAFLITIFTLLVSYPTAYFLTKLKHKQLWLMLVILPTWVNLLLKAYAFIGIFSIHGSI NQFMSFMGLGTHQILFTDFSFLFVATYIEIPFMIMPIFNALEEMNPSLISASRDLGASSA ETFRRVIFPLSLNGVKSGVQAVFIPSLSLFMLTRLIGGNRVITLGTAIEEHFLVTQNWGM GSTIGVILIVAMFIVMLLTGEKKKGRGK >gi|307679193|gb|GL457054.1| GENE 126 124159 - 124995 878 278 aa, chain + ## HITS:1 COG:lin0799 KEGG:ns NR:ns ## COG: lin0799 COG1177 # Protein_GI_number: 16799873 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Listeria innocua # 4 265 2 262 268 315 68.0 9e-86 MQKKKFKWSYVYLFVVFALLYAPIFYLIFYSFNDTQTMNQFTGFTLDNYRNVFEDTRLLT IVLNTFLLAFLSALIATIIGTFGAMGIYYTKRRKNRNTLLSFNNILLVSPDVIIGASFLI FFTAVGFISLGFTSVLLSHIAFSIPIVVLMVLPKLQEMNDSMVDAARDLGANNVQVIKNI ILPFLAPGIIAGYFMAFTYSLDDFAVTFFVTGNGFSTLSVEIYSRARQGISLEINALSAL VFLFSMILVVGYYFISKDNTPKRLKKMRREQSEVAKLK >gi|307679193|gb|GL457054.1| GENE 127 124992 - 126065 1137 357 aa, chain + ## HITS:1 COG:SP1386 KEGG:ns NR:ns ## COG: SP1386 COG0687 # Protein_GI_number: 15901240 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Streptococcus pneumoniae TIGR4 # 1 357 1 356 356 465 64.0 1e-131 MKKLQSLFIGIIAIIVILFFGVRQLEKASGMAGADTLTIYNWGDYIDPALIKKFEKETGY KVNYETFDSNEAMYTKIQQGGTAYDIAIPSEYMIQKMMKAKMLLPLDHSKLKGLENIDAR FLDQSFDPKNKFSVPYFWGTLGIIYNDKFIDGRQIQHWDDLWRPELKNNVMLIDGAREVL GLSLNSLGYSLNSKNDQQLRQATDKLNRLTNNVKAIVADEIKMYMANEESAVAVTFSGEA AEMLENNEHLHYVIPSEGSNLWFDNIVMPKTAKNKEGAYAFMNFMLRPENAAQNAEYIGY STPNKEAKKLLPKEVAEDKQFYPDDETIKHLEVYQDLGQEYLGIYNDLFLEFKMYRK >gi|307679193|gb|GL457054.1| GENE 128 126237 - 126920 325 227 aa, chain + ## HITS:1 COG:no KEGG:EF2648 NR:ns ## KEGG: EF2648 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 227 1 227 227 402 100.0 1e-111 MKRKTIRILLISSGLILILLVGYRLYLEYQTDIQLFLNPKASKTQLLERIRSHGFSAALL LVFLTAIMCAVPGIPTSVIGVIAGLSFGPFSGTLINVLGNSMGNLVAIFLMHHIKFLDKK TETNHWVQSIRRMKHPKIGIMVGYMIPIIPSSVINFAADTMQLPLKNLIAAIFIGVIPSS ILYACGGEALFHGYNKTAVLLIVSVLLFVGLVVIIEKDRKRFQKTVL >gi|307679193|gb|GL457054.1| GENE 129 127030 - 128322 1424 430 aa, chain + ## HITS:1 COG:CAC2835 KEGG:ns NR:ns ## COG: CAC2835 COG2610 # Protein_GI_number: 15896090 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism # Function: H+/gluconate symporter and related permeases # Organism: Clostridium acetobutylicum # 6 375 4 374 384 314 58.0 2e-85 MPDITISWVAAILGLVVAIVLILKKFNPVYSLFFGAIVGCLIGGASLSDTVAVLLNGTQS IMGTAIRVLAAGMLAGVMMESGAAESIANAIVQKLGEKKAILSLALSTMVITAVGVFIPV AVLIVAPIALSVGKSTGISKLSLLIALSGGGKAGNIISPNPNTIAAANGFDLPLSDVMIA GFIPAVFGLITAVVLANIMRNKGSMVKETDLVEEQTKELLPLKKALIAPVLAIVLLLLNP IGAVLNISFIKSLNIDALYILPFASVVGTIAIGQTKQLAFYASSGLKRVTDTVLILIGAG AIAGLISVSDLSTQIVHLISVMGISGTFLAPISGILMGLAVGSTSTAVILATGSFGPAIL DMGTSSLSAAVMVHTGATVIDSVPQGNYFHITAQSMNMTIKERIRVIPYEMCVGGVMTIV ATILYGFILN >gi|307679193|gb|GL457054.1| GENE 130 128344 - 129492 1525 382 aa, chain + ## HITS:1 COG:L79277 KEGG:ns NR:ns ## COG: L79277 COG1929 # Protein_GI_number: 15672838 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerate kinase # Organism: Lactococcus lactis # 1 378 1 378 385 429 62.0 1e-120 MTKKFVLAPDSFKESMSAKEACLAMEKGILAVFKDADIQHVPMADGGEGTVDSLVDATGG TRVPVRVAGPLPDQIVETYYGLLGDQETVVIEMAKANGIELVKAAERNPLITSTYGTGEM IQHALNHGAKKIIIGIGGSVTNDGGAGMIQALGARLLDKEGQELTRGGGALDKLAQIDLT QFDQRIFATEVLVASDVNNPLTGPTGASHVFGPQKGATEEMVAQLDKNLAHYAAIIKKEV GIDVEMMPGAGAAGGLGAGLLAFTKAQLRPGIDIVVEVNQLEEKIKAADYVFTGEGGMDF QTKFGKAPYGVSRLAKKYQKPVFACAGYIGKDVDVLYEEGMTAIFGILAKAEPLEAALKN GPVNLERTVENIARTLQLVPCD >gi|307679193|gb|GL457054.1| GENE 131 129634 - 130647 931 337 aa, chain + ## HITS:1 COG:CAC2833 KEGG:ns NR:ns ## COG: CAC2833 COG3835 # Protein_GI_number: 15896088 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Sugar diacid utilization regulator # Organism: Clostridium acetobutylicum # 2 327 1 337 344 136 31.0 6e-32 MLKLDKIQANKIVEKLMADIPYNINIMDERGKIIASGDSARIGERHRGAERAINERKNIE IYKDTSLEKKGTNEPIILNDHILGVVGISGEPDEVRKFTKLVRSIVLLLTEELNTQQERE KKKKQKNQFIQHLMHVDSAYSEALKLEALELYNLQLDDQNHCVLTKDKRLLSSYYPGHEI FEWENCYLVITSEPPQITKPVTEYLVISSEKATIQQMVQEAQNTYLLLSFLQLEKAKFYQ AEDFFIQGIFNFPFHIELDFFETIQTIYDEYYETVIFFSNHNLNINETSQVLHIHRNTLN YRLKRIHELTGMDPKVWQDFWKLFYYFAYCFKERFEK >gi|307679193|gb|GL457054.1| GENE 132 130770 - 131672 990 300 aa, chain + ## HITS:1 COG:lin0768 KEGG:ns NR:ns ## COG: lin0768 COG1597 # Protein_GI_number: 16799842 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Listeria innocua # 1 300 1 299 309 270 47.0 2e-72 MKKAVLIVNPSSGGEKAKEFETLAEEKLKQLFDEVVVKQTEKGGDAEQFAREAAESHFDS VFVMGGDGTVNEGISGLAEQAYRPKFGFFPLGTVNDLARALNLPMDPEEAIQQLDLEKTS ALDVGKINDDYFMNVVAIGTIPESINDVDVEQKTKLGKLAYFISGAKHLANAQTYPFHLR LDQKEQTIESSTVLVGLTNSIGGFETLLPEAQVDDGKLHLVYLKDQSLWDAVKAVPDLLK GVDQSTDNLVYLTFKEGTISLENQEELTTNVDGDEGAALPITLEILPKHLTVYCGEEQTK >gi|307679193|gb|GL457054.1| GENE 133 131816 - 132526 785 236 aa, chain + ## HITS:1 COG:L62955 KEGG:ns NR:ns ## COG: L62955 COG3597 # Protein_GI_number: 15672246 # Func_class: S Function unknown # Function: Uncharacterized protein/domain associated with GTPases # Organism: Lactococcus lactis # 32 236 12 216 217 238 58.0 5e-63 MRRKKHKNKKKQELFEEIEKQELAEQETKQLNEEIEDPEFRSFFQDVLKKFPQKTSTAIM NAFATSKGKAEQLVTNSQTQLDKVFDEFLAGVSPDVKKKSHQTIHFAALSAAIIGFSPIP FSDAFLLVPVQLTMMSRLHKIFGQSWSESLGKSLTKELVVVSLGKSAVGNILKVIPVVGT VTGGMVNASVAVAITEALGWVTVKMLNDGVDIFDDVMSFKGQFSTLFKAIQNAKKK >gi|307679193|gb|GL457054.1| GENE 134 132709 - 132798 98 29 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFNALGGGGVEQIVQRPLFSQKKPLSWVD >gi|307679193|gb|GL457054.1| GENE 135 132763 - 132843 73 26 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFNAPPPEGVEQFVQRPLLIDGEVIC >gi|307679193|gb|GL457054.1| GENE 136 132847 - 134556 2090 569 aa, chain - ## HITS:1 COG:SPy0184_1 KEGG:ns NR:ns ## COG: SPy0184_1 COG4176 # Protein_GI_number: 15674389 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 5 305 8 306 306 368 64.0 1e-101 MNKYQLPVASWVESFTDWLTSTFAGLFSFLQTIGQSVMDNITALLTAVPPLVLIVLLTIA AFFISNKKIGLSLFTFIGLMFIYNQNLWNDLMSTVTLVLLSSVISIIIGVPLGILMAKSE KAKSIITPILDFMQTMPGFVYLIPAVAFFGIGMVPGVFASVIFALPPTVRFTNLGIRQVP NELVEAADSYGSTGWQKLFKLELPLAKNTIMAGVNQTTMLALSMVVIASMIGAPGLGRGV LSALQRAQVGNGFVNGVALVILAIIIDRFTQHLNNKKAAPKAAGATSKKKKYGIIAAVVV IVAGLVGASIFTTTNDKQISLSYVEWDTEVASTHVVAEVLKDMGYDVKTTPLDNAIMWES VAKGETDAMVGAWLPGTHAEQYKQYKDKLDDLGENLKGAKLGIVVPSYMDVDSIEDLSDQ AGKKITGIEPGAGVVAAAEKTKEAYPNLKDWSVETSSSGAMTVALGQAIKNNEDIVITGW SPHWMFAKYDLKYLADPKGTMGGEEAIHTMARQGLKEDQPEAYKVLDNFHWTTKDMESVM LEINEGKDPQEAARDWVDSHKDQVAEWKK >gi|307679193|gb|GL457054.1| GENE 137 134549 - 135739 1461 396 aa, chain - ## HITS:1 COG:L74195 KEGG:ns NR:ns ## COG: L74195 COG4175 # Protein_GI_number: 15673434 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport system, ATPase component # Organism: Lactococcus lactis # 1 389 1 391 408 550 74.0 1e-156 MPKVKVNHLTKIFGKKTKPALEMIRANKSKTEILEKTGATVGVYDVNFEVEEGEIFVIMG LSGSGKSTLIRLLNRLIEPTSGNIYIDGQDISSLDKEGLREVRRNKMSMVFQNFGLFPHR TILENTEYGLEIRGVPKEERQAKAEKALENSSLIAFKDQLPSQLSGGMQQRVGLARALAN DPEILLMDEAFSALDPLIRREMQDELLDLQENVKKTIIFITHDLNEALRIGDRIALMKDG QIMQIGTGEEILTNPANEYVRTFVEDVDRSKVLTAQNIMVPALTTNIEIDGPTVALKRMR QEEVSMLLAVDKKRQLKGVVRAEKALEARKNGTSLVECVDPEIQTIDKDMLVNDIFPLIY DAQTPLAVTDNGKLLGVVIRGSVLEALAETEVNEHE >gi|307679193|gb|GL457054.1| GENE 138 135941 - 136573 571 210 aa, chain - ## HITS:1 COG:SPy1259_1 KEGG:ns NR:ns ## COG: SPy1259_1 COG2188 # Protein_GI_number: 15675218 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 149 1 149 149 109 36.0 4e-24 MASKKISLTKPKYQQIAVDVAEKIAEGKLHVGDKIHARSTLANQYQVSPETARKAIIVLV DLEIVKAKHGSGFYVASKEKAQDFVTQYQDVQTIAEIKEELLDSVAKQKEELTHFSSILD TLVEQTKRFDSFNPMNPYSLVLTEEAAYLEATISEMNFWQNTSATIIAIKHKEELLVSPG PYAKISLNDTLYFVGHDESTLQRVQNFFYP >gi|307679193|gb|GL457054.1| GENE 139 136588 - 138534 2052 648 aa, chain - ## HITS:1 COG:lin2179 KEGG:ns NR:ns ## COG: lin2179 COG0488 # Protein_GI_number: 16801244 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Listeria innocua # 1 644 1 650 650 669 57.0 0 MILLQANQVARHFGSETLFENIHLEIATKSRIALVGRNGAGKSTFLKIIAGIDAPDSGTI AKNKTATLGYLAQNTGLESDKTVWEEMTKAFADILEMEQRMRELETKISEMEPTTSVYEG ILKEYDQLQHTFSEKNGYGYENEIRSVLHGFGFDESFYTKDIQTLSGGQKTRLALARMLL QKPDILILDEPTNHLDIETLSWLESYLPSYAGALLIVSHDRYFLDKVVNEVYELSRKKMT HYKGNYSKYLELKAEQLASEWKAYEKQQEEINKLEDFVAKNLVRASTTKRAQSRRKVLEK MDRLDRPQGDEKSAHFLFDSEKVSGNVVLQVEDAAIGYDQEHILSEPIHLDIRRKEAIAL VGPNGIGKSTLLKSIIDRIPFIKGSKTFGTNVSVGYYDQEQANLHGNKTVLAELWDEHPT TPEKEIRSILGGFLFSGDDVEKTIPLLSGGEKARVALAKLAMDRDNFLILDEPTNHLDID NKEVLENALIDYEGTILFVSHDRYFINRIATKVVELSEKGSKLYLGDYDYYLEKKQEEEE IAALLANEEAAKKPEPVTAKNTFYQNKEQQKLLRTLQRKITQVEENLAQLDTTIAQLEAQ MSQPDILENHVELLALNQQLDDARQQQDELLEQWENFSLELEEMENNN >gi|307679193|gb|GL457054.1| GENE 140 138748 - 139398 855 216 aa, chain + ## HITS:1 COG:lin2178 KEGG:ns NR:ns ## COG: lin2178 COG2344 # Protein_GI_number: 16801243 # Func_class: R General function prediction only # Function: AT-rich DNA-binding protein # Organism: Listeria innocua # 6 207 8 209 215 246 60.0 2e-65 MKDQVIPKATARRLPLYYRYLRMLHDTGKNKVSSTELSEAVQVDSATIRRDFSYFGELGK RGYGYDVENLMNFFAKTLNEDELTNVALIGVGNLGSALLKYKFHQSNSIRVSCAFDVNED IVGRIVDGIPVYPMEDMMEQIRVQQIEVAILTIPARKAQEVVNKLAEAGVKGILNFTAAR LVAPPEVLIQNVDLTNELQTLIYFLHHDNELIDEEE >gi|307679193|gb|GL457054.1| GENE 141 139441 - 140094 667 217 aa, chain - ## HITS:1 COG:BS_ydiL KEGG:ns NR:ns ## COG: BS_ydiL COG1266 # Protein_GI_number: 16077668 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Bacillus subtilis # 3 209 1 221 244 109 38.0 4e-24 MTLRKSSLFILVTYIIAFFGPLLFSGISPNAAINVTTALYIIGALVMIGIFLKTTEPSPL EETATLKSPIFIFLLGVSGIFIAMLIQGVTFAIEVAITGEQATSQNTQAIVAVILANPLF ILATTIGGPIMEEFVFRYAFIHLIQPFTNFWIAATVSSAIFSLAHADGHFFVYFFMGFFF ALLYKQTGKIWTSIIAHCGMNTIVIIVQLLLHNGAIQ >gi|307679193|gb|GL457054.1| GENE 142 140113 - 140289 195 58 aa, chain - ## HITS:1 COG:no KEGG:EF2636 NR:ns ## KEGG: EF2636 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 58 1 58 58 76 100.0 4e-13 MKQRLLTALIATFVYFVIANLGNLVFSVTEGIVSTLWESLFFFLFVFLLLGYRNNRKK >gi|307679193|gb|GL457054.1| GENE 143 140522 - 140806 422 94 aa, chain + ## HITS:1 COG:lin2175 KEGG:ns NR:ns ## COG: lin2175 COG0234 # Protein_GI_number: 16801240 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Co-chaperonin GroES (HSP10) # Organism: Listeria innocua # 1 91 1 91 94 107 68.0 7e-24 MLKPLGDRVVIRVAKEEEKTVGGIVLASVAKEKPQTGEVIAVGEGRVLENGTKVPMEVKI GDTVMFEKYSGTEVKYEGVEYLIVSAKDIIATVE >gi|307679193|gb|GL457054.1| GENE 144 140864 - 142489 1605 541 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 [Haemophilus parasuis 29755] # 2 541 3 547 547 622 59 1e-177 MAKEIKFAEDARAAMLRGVDVLADTVKVTLGPKGRNVVLEKSFGSPLITNDGVTIAKEIE LEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGLKNVTAGANPLGIRRGIE LATKTAVEELHNISSVVDSKEAIAQVAAVSSGSEKVGQLIADAMEKVGNDGVITIEESKG IETELDVVEGMQFDRGYLSQYMVTDNDKMEAVLENPYILITDKKISNIQDILPLLEQILQ QSRPLLIIADDVDGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGTVIT DDLGLELKDTTIENLGNASKVVVDKDNTTIVEGAGSKEAIDARVHLIKNQIGETTSDFDR EKLQERLAKLAGGVAVVKVGAATETELKELKLRIEDALNATRAAVEEGMVSGGGTALVNV IGKVAALEAEGDVATGIKIVVRALEEPIRQIAENAGYEGSVIVDKLKNVDLGIGFNAANG EWVNMVEAGIVDPTKVTRSALQNAASVSALLLTTEAVVADKPEPAAPAPMMDPSMGMGGM M >gi|307679193|gb|GL457054.1| GENE 145 142791 - 143510 680 239 aa, chain + ## HITS:1 COG:SA0017 KEGG:ns NR:ns ## COG: SA0017 COG0745 # Protein_GI_number: 15925723 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Staphylococcus aureus N315 # 63 237 65 231 235 77 32.0 2e-14 MEKYTIGVVPLTIETKEYCQNWFVSNQVECQIIQGTNILLHLHHIDGLVIEVTDHQQVNT CCELLMTIRKQSDLPIWLFSRTEVISKVNRIIYLQLGADGVFDHSYDRQECMLSMSNLLQ RVKRRFYPKLAIANEEQTVTKNLSERLYLIAPNLSVCLGSGEEILLTKLEFFTIEYLYKH AGQTITYEELYKNVWKDTANERKYRVANVIFHLRKKIEQDVNKPQYIKTIRSKGYMLTV >gi|307679193|gb|GL457054.1| GENE 146 143534 - 144244 846 236 aa, chain + ## HITS:1 COG:no KEGG:EF2629 NR:ns ## KEGG: EF2629 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 236 1 236 236 240 98.0 4e-62 MWQFLTKNNEDEEYEKMPDFENEQSMKAQPTVTEEAIFDDEFVYAKEQSAKVKQVQQQVP TELSEESFSFVEKLEEENQLYQQSIKKLTEQLLMQTNEVEALQKQVVEKDVQLKHVKETL SDKETTITSLQKQLSEEKMQQRQTSEENLDTAVTLSQKEIGEVLLEAKRQAKETISQAKQ QVATVHEEMEQRLATLTRMKQVAREYQAYCEQMLTIKNESTGTYQQIEQLLAEIKR >gi|307679193|gb|GL457054.1| GENE 147 144261 - 145808 1251 515 aa, chain + ## HITS:1 COG:SPy0857 KEGG:ns NR:ns ## COG: SPy0857 COG1705 # Protein_GI_number: 15674890 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Streptococcus pyogenes M1 GAS # 185 354 41 204 235 150 53.0 6e-36 MKKRKARYLKLVCIGILGIYAGASYYNSEPLIAQEETETRDESRQLSLEEKRADQANQDQ GTLTSSTLNETIISSSEQQESSTQNDSGDHQENNVEPSESENSLPPQEKPIASTKLTESL QSEQPASEERKALTEKPPHNQEPQNSTLTEKTKEPLVHSEIDNSQEKEKQAGIQQQAEAN FVVQGNASTSEFIRKIGEEARVIGQQHDLYASVMIAQAILESGSGNSALAAAPNYNLFGI KGAYHGQSVSFPTQEDDGKGKMTTIHADFRQYPSYKESLTDYSKLIINGLAGNPTFYHGV LKANTTNYQQATKFLTGRYATDTYYDKKLNALIETYQLTEYDQEKKKPVVTNLAEEKKPS FDKEAVKEQLKKEAVIYEVSKGDSLATISQTFGVSATAILKQNSKTQEMFYIGQKITIPQ HTAATSLEPKEQALLQSLIISKSVTNALETAEQSNGTANDSKTESTEYYEVKRGETLAKI AKKTGYSLTALKQANDLTYSVLTEGQTIALPKLKD >gi|307679193|gb|GL457054.1| GENE 148 145805 - 145879 61 24 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNELTLYSYSNNILTLSTNKLNQH >gi|307679193|gb|GL457054.1| GENE 149 146027 - 146437 268 136 aa, chain + ## HITS:1 COG:lin2694 KEGG:ns NR:ns ## COG: lin2694 COG2246 # Protein_GI_number: 16801755 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 11 135 21 145 145 100 46.0 9e-22 MKELFRKYREVLAYLFFGGATTVVNLVVFFVCQNVLGLDYKISNTISWFLSVLFAFFTNK YWVFASKHESIAGFFKEMGLFYWYRILSFVADMGLMILLIDGIHFSSFWAKMITQVVVVI LNYFFSKFFIFKEKEV >gi|307679193|gb|GL457054.1| GENE 150 146515 - 147999 1721 494 aa, chain + ## HITS:1 COG:L107468 KEGG:ns NR:ns ## COG: L107468 COG1488 # Protein_GI_number: 15673082 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid phosphoribosyltransferase # Organism: Lactococcus lactis # 1 483 6 487 495 769 76.0 0 MDYTYADDSLTLHTDMYQINMMQTYWELGRADLHAVFECYFREMPFNHGYAIFAGLERLV NYLENLTFTESDIAYLREVEEYPEDFLTYLANFEFKCTVRSALEGDLVFNNEPLIQIEGP LAQCQLVETALLNMVNFQTLIATKAARIKSVIGDDPLLEFGTRRAQELDAAIWGTRAAYI GGADATSNVRAGKIFGIPVSGTHAHSLVQSYGNDYDAFMAYAKTHRDCVFLVDTYDTLKA GVPSAIRVAREMGDKINFLGVRIDSGDMAYISKRVREQLDEAGFTEAKIYASNDLDENTI LNLKMQKSKIDVWGVGTKLITAYDQPALGAVFKLVSIEGEDGQMKDTIKLSSNAEKVTTP GKKQVWRITRKSDKKSEGDYVTLWNEDPRQEEEIYMFHPVHTFINKYVRDFEARPVLQDI FVEGKRVYELPTLDEIKQYAKENLDSLWEEYKRDLNPQKYPVDLSTDCWNHKMNLLEKVR KDVKHLTETVNKEA >gi|307679193|gb|GL457054.1| GENE 151 148002 - 148829 1131 275 aa, chain + ## HITS:1 COG:SP1420 KEGG:ns NR:ns ## COG: SP1420 COG0171 # Protein_GI_number: 15901273 # Func_class: H Coenzyme transport and metabolism # Function: NAD synthase # Organism: Streptococcus pneumoniae TIGR4 # 3 275 2 274 274 415 76.0 1e-116 MTTLQEKIIQELGVLPTIDPKEEVRKSIDFLKAYLTKHPFLKNFVLGISGGQDSTLAGRL AQLAMTEMREETGDMSYQFIAIRLPYGEQADEADAQAALAFIQPDVSLRVDIKPAVDAMV GSLENAGVQISDFNKGNMKARQRMITQYAVAGENAGAVIGTDHAAENVTAFFTKYGDGGA DILPLFRLNKRQGKALLKELGAPEALYLKIPTADLEDDKPLVADEVALGVTYDAIDDYLE GKKVSETDQQTIENWYKKGQHKRHLPITIFDDFWK >gi|307679193|gb|GL457054.1| GENE 152 149022 - 150827 2010 601 aa, chain + ## HITS:1 COG:L96595 KEGG:ns NR:ns ## COG: L96595 COG2217 # Protein_GI_number: 15672077 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 1 598 1 592 593 555 51.0 1e-158 MKHVTKLGITIITGVLALLFEFILHQPNWAYGIILITGSVMALMMFWEMIQTLREGKYGV DILAITAIVATLAVGEYWASLMILIMLTGGDSLEDYAAGKANQELKSLLDNSPQKAHRLN GENLEDVSVEEINVGDELVVKPGELVPVDGLVKTGTSTVDESSLTGESKPIEKNPGDELM SGSVNGDGSLKMVAEKTVADSQYQTIVNLVKESAARPAHFVRLADRYAVPFTLIAYLIAG VAWFVSKSPTRFAEVLVVASPCPLILSAPIALVAGMGRSSRHGVVIKSGTMVEKLASAKT IAFDKTGTITQGQLSVDQVQPINAGITAAELVGLAASVEQESSHILARSIVAYARKQDVP LKNITDLAEVSGAGVKAFVDGAEIRVGKKNFVTQESQATEQIDKTTIHISRNGTYLGRIT FTDTVRPEAKETMEKLHQLHLQRILMLTGDQESVAETIAAEVGITEVHGECLPQDKLTIL KELPKENHPVIMVGDGVNDAPSLAAADVGIAMGAHGATAASETADVVILKDDLSKVSQAV EIAQDTMKIAKQSVLIGIFICVLLMLIASTGIIPALIGAMLQEVVDTVSILSALRARRIG Q >gi|307679193|gb|GL457054.1| GENE 153 150919 - 151203 410 94 aa, chain + ## HITS:1 COG:L86826 KEGG:ns NR:ns ## COG: L86826 COG3592 # Protein_GI_number: 15672668 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 90 15 104 104 117 62.0 4e-27 MKGNQIDGQPVTEEQLLKEGYRKYTGEGIDIFYNKDICEHIGNCVRGNPEVFEVGRKPWI IPDNGSVENDMIVVDSCPSGALKYIRKAGNEYAN >gi|307679193|gb|GL457054.1| GENE 154 151193 - 151468 401 91 aa, chain + ## HITS:1 COG:lin0181 KEGG:ns NR:ns ## COG: lin0181 COG2388 # Protein_GI_number: 16799258 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Listeria innocua # 1 88 1 88 92 90 55.0 5e-19 MQIKEENNRFALYNDENQEIGEMTWSDAGESMMIIDHTFVDPTYRGQKLAEKLVLAGVEK ARKEHKKIIPLCPFAKKEFDTKPEYGDVLRK >gi|307679193|gb|GL457054.1| GENE 155 151636 - 151872 383 78 aa, chain + ## HITS:1 COG:L0338 KEGG:ns NR:ns ## COG: L0338 COG1314 # Protein_GI_number: 15672923 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecG # Organism: Lactococcus lactis # 1 78 5 82 82 72 46.0 2e-13 MYNLILTLVIILSVLIVITVMMQPSKQNSAASAFTGGADKLFGKQKARGFEAVMQRSTAV LGAIWMILLFVLAFLSSK >gi|307679193|gb|GL457054.1| GENE 156 152027 - 152791 847 254 aa, chain + ## HITS:1 COG:BH3554 KEGG:ns NR:ns ## COG: BH3554 COG1647 # Protein_GI_number: 15616116 # Func_class: R General function prediction only # Function: Esterase/lipase # Organism: Bacillus halodurans # 4 252 2 248 248 164 34.0 1e-40 MAKKINLPKPLFSEKGKRAVLLLHAYSGSSNDVRMLSRRLEKENYTVYSPNFSGHGTLVP EDILDQTTEQWWQDTQEAVAFLRERGYQEIAIFGLSMGGIFSMHALTEQLTGLIGGGFFC SPIYPVENKVPENFVLYAENVMKIAEVPAEEQQSRLQSIEQRVKQQLGAIETIASQTADK LNKIHAPLFLAQAGKDEMIEPMGVYQTAQALTQARVTLQWYPNSGHVITVSGEHKQLEQD VVQFLATLPWNEEK >gi|307679193|gb|GL457054.1| GENE 157 152791 - 155160 1620 789 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 [Clostridium acetobutylicum ATCC 824] # 6 746 3 726 730 628 44 1e-179 MTKQTIKEQILHFMESQKKKSFSMEEIAQGLNLEKSSDFKILVQTIAQMEREKSVSFNKK GKVLLPMKDLLIEGTFRANERGFGFVTIDPEEPDVYIPKEATNFAMDGDTVLIDVIQHAD PFSDRGAEGKVKEIKERAVSQVVGEFVAYSEEEMAEMGLYGYMIPKDKKLNQYTVSIAPE GIKPVDGSIVIAEITYYPDQEYPTSMEGLVKQVIGHKNDPGMDILSIVVAHGIPTAFPDE VLAEADQVPETIAESDLVGRRDLRDQLIVTIDGEDAKDLDDAVTVQKLANGNFFLGVHIA DVSYYVTEGSQLDMEAYERGTSVYLTDRVVPMIPQRLSNGICSLNPHVPRLTMSCEMEIT PEGEVISHEIFQSVIQTTERMTYTAVNEILEEQKPETLERYKELVPMFKEMGELHHILEE MRMRRGAISFEDREAKVLVDENGHPQDILLRTRGVGERLIESFMLAANETVARHYHDLKL PFIYRIHEQPKEEKMQRFFDFAAVLGILVKGTKENISPKDLQKVLEQVENKPEEVVINTM LLRSMQQAKYSEDNYGHYGLAAEYYTHFTSPIRRYPDLIVHRLIRSYSQDQSEKNQEKWN EALPEIANHSSSMERRAVDAEREVDAMKKAEFMVDKVGETYDGIISSVTKFGIFVELPNT IEGLIHVNNLKQDYFHFIENHMALVGERTGMTLKIGQKVQIRVEKADPETREVDFELISA EEVAPVEGPKGRKKGKANSSTRSNNQRRNKKDESFDGKKKKNKKKGKGKKQPFYKEAMKQ KNKKGKKKK >gi|307679193|gb|GL457054.1| GENE 158 155173 - 155637 623 154 aa, chain + ## HITS:1 COG:lin2542 KEGG:ns NR:ns ## COG: lin2542 COG0691 # Protein_GI_number: 16801604 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: tmRNA-binding protein # Organism: Listeria innocua # 1 154 1 154 154 209 72.0 2e-54 MPKGEGKLIAQNRKARHDYSIIDTVEAGLVLQGTEIKSIRNGRINLKDGFARIRNGEAFL YNVHISPYEQGNIFNHDPLRTRKLLLHKKQINKLIGETKNTGITLVPLKVYIKDGYAKVL IGLAKGKKQYDKREDLKRKEVDRQISRTLKNNRR >gi|307679193|gb|GL457054.1| GENE 159 155716 - 155817 81 33 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNVNDSFFNRFGKQYHPALDWFMEKVFQPIFNT >gi|307679193|gb|GL457054.1| GENE 160 155940 - 156659 689 239 aa, chain + ## HITS:1 COG:lin2679 KEGG:ns NR:ns ## COG: lin2679 COG0356 # Protein_GI_number: 16801740 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit a # Organism: Listeria innocua # 1 238 1 237 238 225 52.0 6e-59 MEEKKLLFNIGPIWFDGTIVLMVLLTCIIVFAFVYACTRNMKLRPKGKQTVIEWLVDFIR GIITDNLPRKEVSNFHLMAFTLFMFVLVSNILGLVTKIVVGDDLSVWKSPTADPIVTLTL AMMMIVLTHFFGMKRFGFKGYLVNSYLRPVGFLLPVKLMEEFTNLLTLGLRLYGNIFAGE VLLGLIAGTVASVGLWVIPLAIPLEMIWVAFSIFIGCIQAFIFVTLSMVYMSHKIETEE >gi|307679193|gb|GL457054.1| GENE 161 156708 - 156929 436 73 aa, chain + ## HITS:1 COG:SA1910 KEGG:ns NR:ns ## COG: SA1910 COG0636 # Protein_GI_number: 15927682 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K # Organism: Staphylococcus aureus N315 # 4 69 1 66 70 60 59.0 1e-09 MEGLNFIAAAIAIFGSAIGAAIGNGQVISKTIESMTRQPEMSGQLRTTMFIGVALIEAVP ILGVVVSLLLLFR >gi|307679193|gb|GL457054.1| GENE 162 157067 - 157597 787 176 aa, chain + ## HITS:1 COG:L11208 KEGG:ns NR:ns ## COG: L11208 COG0711 # Protein_GI_number: 15673750 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit b # Organism: Lactococcus lactis # 10 171 7 168 168 123 46.0 2e-28 MLLTILVVGETAPSTTLGTMIVVSGAFLILMLLLKKYAWGAIVDILTQREEKIANDLDSA EQSRVAAAKMEKERQQQLLSSRSEAAEIIKNAKESGEQTRQKTLKETTAEVTRLREKART DISQEREEALSSVKNEVADLSLQIAAKILNKELTPDAHEALIDSYIESLGKANETR >gi|307679193|gb|GL457054.1| GENE 163 157584 - 158126 703 180 aa, chain + ## HITS:1 COG:BH3757 KEGG:ns NR:ns ## COG: BH3757 COG0712 # Protein_GI_number: 15616319 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) # Organism: Bacillus halodurans # 3 179 1 178 183 77 28.0 9e-15 MKLDKYTVGKRYGKALFELAVEKNQAEAIYQELLTLREVYHQVPGIGDILSDDRLEPYEK DSIMEKLVTGFSEMMQNFLRVVYEYRRMYDLLLMIDEYERRYDEHQGLILGSVTTAIPLS KEQHQAMEEKAAQLLGYEQAHLVNLIDPSIVGGVVIEANHQVIDGSIRKQLEHMQQKLLK >gi|307679193|gb|GL457054.1| GENE 164 158155 - 159711 2235 518 aa, chain + ## HITS:1 COG:SPy0758 KEGG:ns NR:ns ## COG: SPy0758 COG0056 # Protein_GI_number: 15674806 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, alpha subunit # Organism: Streptococcus pyogenes M1 GAS # 1 496 1 496 502 808 82.0 0 MAIKAEEISALIKEQIENYQQQLAVEEVGTVTYVGDGIARAHGLENAMSGELVEFSNGSY GMAQNLETNDVGIIILGDFETIREGDKVQRTGKIMEVPVGEALIGRVVNPLGQPLDGLGE IKTDKTRPVEATAPGVMQRQSVAEPMQTGLKAIDALVPIGRGQRELVIGDRKTGKTSIAI DTIINQKGQDVICIYVAIGQKESTVRNQVETLRKFGALDYTIVVTAGASQPAPLLYIAPY AGTAMGEEFMYNGKHVLIIFDDLSKQAVAYRELSLLLRRPPGREAYPGDVFYLHSRLLER AAKLSDELGGGSMTALPFVETQAGDISAYIPTNVISITDGQIFLESDLFYAGTRPAVDAG LSVSRVGGSAQIKAMKKVAGTLRLDLASYRELEAFTQFGSDLDAATQAKLNRGRRTVEIL KQKLHAPLPVEKQVLILYALTHGFLDSVSVDKILHFEQDLFDYFDGKHADLLETIRTTKD LPDTDALDAAITEFSEMFAAANNSGDSAKEALEKIDNA >gi|307679193|gb|GL457054.1| GENE 165 159727 - 160635 1066 302 aa, chain + ## HITS:1 COG:SP1509 KEGG:ns NR:ns ## COG: SP1509 COG0224 # Protein_GI_number: 15901356 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, gamma subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 302 1 292 292 353 64.0 3e-97 MGASLNEIKQRIASTKKTSQITKAMQMVSAAKLTKSEGASKSFQEYSSKIRSVVTHLVAA QLSELRETEQSSLSEGNYHVMLAQRPVKKTGYIVITSDKGLVGGYNSSILKQTMSMIQED HDSNKEYALIAIGGTGADFFKARGIDVSYELRGLTDQPTFEEVRKIVTTATTMYQNEVFD ELYVCYNHHVNSLTSQFRVEKMLPITDLDPSEATSYEQEYLLEPSPEAILDQLLPQYAES LIYGAIIDAKTAEHAAGMTAMKTATDNAQNIISDLTISYNRARQGAITQEITEIVAGAAA LE >gi|307679193|gb|GL457054.1| GENE 166 160709 - 162115 1930 468 aa, chain + ## HITS:1 COG:SP1508 KEGG:ns NR:ns ## COG: SP1508 COG0055 # Protein_GI_number: 15901355 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, beta subunit # Organism: Streptococcus pneumoniae TIGR4 # 1 468 1 468 468 796 87.0 0 MSSGKIVQVIGPVVDVEFSLDQSLPDINNALVVYKNGEAKQKVVLEVALELGDGVIRSIA MESTDGLQRGMEVIDTGKSISVPVGKDTLGRVFNVLGDTIDLEAPFPADAERSGIHKKAP AFDELSTSNEILETGIKVIDLLAPYLKGGKVGLFGGAGVGKTVLIQELIHNIAQEHGGIS VFTGVGERTREGNDLYYEMKDSGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVE GQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSITSI QAIYVPADDYTDPAPATAFAHLDATTNLERKLTEQGIYPAVDPLASSSSALAPEIVGEEH YEVATEVQHILQRYRELQDIIAILGMDELSDDEKVLVGRARRVQFFLSQNFNVAEQFTGQ PGSYVPVAETVRGFKEILEGKHDNLPEEAFRSVGKIEDAIEKAKQLNY >gi|307679193|gb|GL457054.1| GENE 167 162132 - 162551 603 139 aa, chain + ## HITS:1 COG:SPy0761 KEGG:ns NR:ns ## COG: SPy0761 COG0355 # Protein_GI_number: 15674809 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) # Organism: Streptococcus pyogenes M1 GAS # 1 137 1 137 138 149 60.0 1e-36 MDSLTVNVVTPNGLVYDHHAKIVVAKTTDGEIGILPKHAPIIVPLAIDEVRIKRTDSDTH VDWVAVNGGIMEVRDNVVSIIADSAERERDIDVPRAERAKQRAERLIEEAKAKDDRDQLR RATVALHRAINRINVSKHG >gi|307679193|gb|GL457054.1| GENE 168 162740 - 162976 146 78 aa, chain + ## HITS:1 COG:no KEGG:EF2606 NR:ns ## KEGG: EF2606 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 78 1 78 78 112 100.0 6e-24 MQYYGVDAIVRIVSHLMFIYISFWALQSLRIEQFFKTQFTPQIRMLMVFFAIAIGYTVSS FALELIALCRNLFIVYFP >gi|307679193|gb|GL457054.1| GENE 169 163079 - 164380 1715 433 aa, chain + ## HITS:1 COG:lin2670 KEGG:ns NR:ns ## COG: lin2670 COG0766 # Protein_GI_number: 16801731 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Listeria innocua # 1 425 1 422 430 526 70.0 1e-149 MEQIIVHGGNTKLEGTVKIEGAKNAVLPILAATLLAEEGVTTLKNVPILSDVFTMNQVIK HLNVAIDFDEDANEVTIDATQPLGIEANYEYVSKMRASIVVMGPLLARNGHAKVAMPGGC AIGKRPIDLHLKGFQALGAKIIQKNGYIEAIADELIGNTIYLDFPSVGATQNIMMAAVRA KGTTIIENVAREPEIVDLANILNKMGANVIGAGTETMRIEGVDKLHAVEHSIVQDRIEAG TFMVAAAMTEGNVLIEEAISEHNRPLISKLTEMGAIIEEEENGIRVIGPKHLKPTDVKTM PHPGFPTDMQAQMTAIQMFAEGTSIVTETVFENRYQHLEEMRRMNADLKIDGNIAIINGG NELQGAAVEATDLRAAAALILVGLRANGITRVSNLKYLDRGYYEFHKKLQKLGANVERVN DEKIEEKQATTVI >gi|307679193|gb|GL457054.1| GENE 170 164394 - 164570 299 58 aa, chain + ## HITS:1 COG:no KEGG:EF2604 NR:ns ## KEGG: EF2604 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 58 1 58 58 82 100.0 6e-15 MSSFRYILVTLLKILVVISLVIILFVVGTMIGYGLIGNGNPMDVFDEKIWTHIMNFFK >gi|307679193|gb|GL457054.1| GENE 171 164698 - 165066 430 122 aa, chain + ## HITS:1 COG:lin0546 KEGG:ns NR:ns ## COG: lin0546 COG3731 # Protein_GI_number: 16799621 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIA # Organism: Listeria innocua # 15 117 17 116 116 73 35.0 1e-13 MQATVTEIGKHAIDDSEKMIILFGETATDTLKQHAVIQSFPEKDQVTLAEGDHLKIGDTN YTITKVGSFANSNLQSIAHSTLIFADAPTDEDDVIRNGVYLTPHQLPKITIGTTIDYLVN GA >gi|307679193|gb|GL457054.1| GENE 172 165071 - 166240 1405 389 aa, chain + ## HITS:1 COG:SP1505 KEGG:ns NR:ns ## COG: SP1505 COG0628 # Protein_GI_number: 15901352 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Streptococcus pneumoniae TIGR4 # 11 379 10 378 388 351 51.0 1e-96 MDKKQTTDKRLSWFWRWFLNNQVVTALLIVLLVLLIILTFTKVSYLFKPVWQFFGVVGLP VIMAGILYYLLNPIVDYLEKKQISRVWSIIGLFILIVALLIWGGIVIVPKIREQSVSFVN HFPQYIDTIDQKSQEILSDPLFAQFREQLEAAGDKVVSSLGTIIKNVSTFTVQGIGNFFG AVATIFVAIITMPFILFYLLKDGKNLAPYLMKFLPVKMRKPTLKVLAEVNDQVSSYIRGQ LTVAFAVAIMFMIGFSVIGLDYAVTLGIAAGFLNLIPYLGSFLAMIPAVFLGIVSGPALL IKVLIVFAIEQTVEGRFISPLVLGSQLSIHPVTILVVLLTSGKLFGIVGVILGIPVYAAA KVIITHIFEWYQIVSGLYDEDKPDQQEST >gi|307679193|gb|GL457054.1| GENE 173 166302 - 166928 902 208 aa, chain - ## HITS:1 COG:L186107 KEGG:ns NR:ns ## COG: L186107 COG1182 # Protein_GI_number: 15672363 # Func_class: I Lipid transport and metabolism # Function: Acyl carrier protein phosphodiesterase # Organism: Lactococcus lactis # 1 208 1 201 201 193 51.0 2e-49 MSKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLS AWGALRAGAAFETLSENQQQKVARFNELTDQFLSADKVVIANPMWNLNVPTRLKAWVDTI NVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGKDFASQYIKAILNFIGVDQVDGLFI EGIDHFPDRAEELLNTAMTKATEYGKTF >gi|307679193|gb|GL457054.1| GENE 174 167229 - 168071 840 280 aa, chain + ## HITS:1 COG:lin2530 KEGG:ns NR:ns ## COG: lin2530 COG3711 # Protein_GI_number: 16801592 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Listeria innocua # 1 274 1 274 285 246 45.0 5e-65 MRIEKVLNNNVVLSRNEQGEEIVYMGRGLAFQKKIGDTINPDYVEKEFVLKDSAMAGQFQ QLFEDVPTKEVEVVKQIVDLAETTLAIELSSNIYLTLTDHIHYALLRAKEGIDIPNPLVF ETRKFYPKEFEIAKQALAIIAEKLGVQFSENEAGFIAFHIVNAEQGNGNMEVTMEATKMV RDILTIISRYFGQVFDEDSLNYQRIVTHLQYFAQRYLKQEAHDEEDEFLFALVQGKYPKA FQAVQRINEYLLKSYDRPIDQAEMIYLTIHIQRVVNDKKA >gi|307679193|gb|GL457054.1| GENE 175 168234 - 170114 2219 626 aa, chain + ## HITS:1 COG:BH0296_2 KEGG:ns NR:ns ## COG: BH0296_2 COG1263 # Protein_GI_number: 15612859 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Bacillus halodurans # 100 455 2 355 368 291 46.0 2e-78 MSKNQEIAVRVLKAVGGEGNVNSVVHCATRLRFKLKDENKADTAALNADPDVIQVVQSAG QYQVVIGSHVSDVYKDLMANSGLGNDSDNREKESGGNIFNRLIDIISSIFTPFLGAMAGA GVLKGFLTLAVTMGWLADTSGVYLVLFSIADGLFTFLPIMLAFTAAKKFNTNPFLAVALA MALVHPSITALAGKTISFAGLPVIIGPSGYTSSVLPIILAVFAQSYVERFFKKVIPSFLQ IICVPLAVFLIMAPVTFLAIGPIGTVIGDWLGQGYNAIYVFSPIIAGLLMGSLWQVLVMF GMHWGFVPIMMLNLTQGGDTMVPMLLPAVIAQGGAALAVFFLTKNVKLKGLALSSSITTI FGITEPTVYGVTLPLKKPFIAACIGGGIGGAFVAMNHVKNFTFGLVSMLSLPGFIPAETK DTAPMITGAIGAGIAFIIAFVLTFVLRFEDQPNPETATEKTATDKMVAPVKTNQEDKIIL ASPLQGEILPLEKVQDPVFASGALGKGVAIEPTEGKLYAPADGEITTLFPTGHAVGLTTT EGVELLMHIGMDTVELDGKGFELSVKQGDSVKKGDLLVTFDIAAIKEAGYPVVTPIVVTN TNDYLDVLDMNQTDVLHGEDFLAIIK >gi|307679193|gb|GL457054.1| GENE 176 170139 - 171584 1695 481 aa, chain + ## HITS:1 COG:L89194 KEGG:ns NR:ns ## COG: L89194 COG2723 # Protein_GI_number: 15673441 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Lactococcus lactis # 7 480 3 478 478 675 70.0 0 MTTTTKFPKGFLWGGATAANQLEGAYLADGKGLSVADAMPGGKQRFAILGDEAFDWTIDE TKYRYPNHTGIDHYDRFKEDIALFAKMGFKCYRFSIAWSRIFPQGDETQPNEAGLKFYDA VIDECLNYNIEPVITISHYEMPLHLAKEYGGWKNRQLVDFYERFAETVLTRYHQKVNYWM TFNEINSAFHFPALSQGLVKSNGANDYQNIFQAWHNQFVASSKAVKIGHELNPELQIGCM IIYATTYGIDSNPVNQVATMIENQEFNYYCTDVQVRGEYPAYAERIYQKYAVKDLVIEEG DLELLKEYPVDYIGFSYYMSTAVDVTGTTNDTANGNLLDGVKNPFLEASEWGWQIDPEGL RIALNELYNRYQKPLFIVENGLGAIDKVDENFYVADDYRIDYLRRHIEAMAEAVADGVDL MGYTPWGCIDLVSASTGEMSKRYGFIYVDLDDEGNGTKNRYEKKSFNWYKQVIETNGQNL D >gi|307679193|gb|GL457054.1| GENE 177 171704 - 172273 654 189 aa, chain + ## HITS:1 COG:SA1052 KEGG:ns NR:ns ## COG: SA1052 COG0194 # Protein_GI_number: 15926792 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Staphylococcus aureus N315 # 9 157 8 162 207 82 35.0 4e-16 MIKQLQHPFFVIMGPSGSGKTAITSKVFPKNYKVISHTTRKKRLDEVDGVDYYFETKASF QTLIETNQLVEYDFYHGNYYGVGVAAIVETTKEHPAYNALTFPGFQAVFERFGESVIPVF FDVSKENIYQRLKQRESDPKIIEERLNLYDQEILIKNQLEQYPNYQRIDANGPIKEVAGL LQECIKHYY >gi|307679193|gb|GL457054.1| GENE 178 172421 - 173098 729 225 aa, chain + ## HITS:1 COG:L53789 KEGG:ns NR:ns ## COG: L53789 COG1309 # Protein_GI_number: 15672643 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 123 1 121 189 74 36.0 1e-13 MPTNTFFHLPEEKQQRLLDAAQIEFSRHSLQEASIANIVKLAEIPRGSFYQYFENKEDLY FYYFATLRKNSERDLEKQIIAENGDLIEAMDVYFSKMIVEVLTGENASFYRNLFVNMDYR ASRRVTDNLATGEEEKNRKQHCHKHRGRKGHAAYAEHLYQIIDRSKLTIETPKEFTWFMQ TTMHAVFSTIVDGYRQQRENTAYDSTEAVKQLKMKLNWLKNGAYK >gi|307679193|gb|GL457054.1| GENE 179 173119 - 174846 185 575 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 332 559 2 231 245 75 25 1e-12 MIKLVKRMSLWSVFAAVLFMIVQIIADLYLPTLTSNIINDGVAKGDINYIWSTGVVMLGF SLISIVASIGNTFFATKESQSLGKKLRTDIYRKVENFSNNEFDKFGTASLITRTTNDVNQ IQMVMQMFLRLMINAPLTLIGASFMAYNKDPQLTKIFLYVLPIMAVLVGGIMFLAVPLFK SMQKKTDRLNLVFREGLTGVRVIRAFGKANYEEQRFDEANKDYTQTAIKVNTIVALMIPL MTLIMSGTNIAITWFGGHYIAEMQLEVGNLIAFMTYAMQILMSFMMLSMIFVMVPRAQAS ADRINEVLNTDSEIKDVPNPELLSLKGDKATLAFEHVNYRYQHAENLALEDIDFSAKSGE TVAIIGGTGSGKTTLVNLLPRFYDVESGKILLNGKNIKDTSQHNLREMIGFVPQKAVLFT GTIRENMQYGAPNATDEEIWQALEIAQAKAFVSELAEGLDSHVEQGGGNFSGGQRQRLAI ARALVKPADVYVFDDSFSALDFKTDANLRKALKEQMTDAIVVLVAQRVSTVMEASTILVL DEGKLVGKGTHEELLANNQTYQEIVHSQLREEDLA >gi|307679193|gb|GL457054.1| GENE 180 174843 - 176711 171 622 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 397 605 28 233 312 70 26 6e-11 MSSRPKGGPMGGGPGRNIGAKGPKPKNFWKTVKRLFRYMSKRMLSIIAVLVLAIAAVVFQ IQTPKVLGQATTEIFKGVMKGAAEMKQGLKITSFPIDFDKIGQILLIVIAMYLISAVFNF LQQVIMTRVSQRTVYELRQELEAKMNKVPISYYDTHSNGDIMSRAINDMDNIASTLQQNL TQLITSIVTFVGVLWMMLTISWQLTLIALATVPLSLIVVMVVAPRSQKHFAAQQKSLGLL NNQVEETYGGHVVVKSFNHEESDQEVFEKENEKLYHAGRKAQFISAIIMPLMNFIKNLGY VFVAVLGGVKVANGMMDLGDVQAFLQYTNQFSQPITQIANLMNTIQATVASAERVFEVLD EEEMVDEPSGVPVETDSPYRVSFEHVAFGYSPEKLLMKDFNLNVKPGEMVAIVGPTGAGK TTLINLLERFYDISSGSIKYDGVDTRDLSREELRAHFSMVLQDTWLFTGSIYDNIHYGND QASEEEVIRAAKAAHVDDFVRKLPEGYQTILNEEASNISQGQRQLITIARAFLANPDVLI LDEATSSVDTRTEILIQAAMNRLLENRTSFVVAHRLSTIRDADTIIVMAEGSIVETGTHD ELMAKNGFYADLYNSQFSEEVA >gi|307679193|gb|GL457054.1| GENE 181 177027 - 177872 1025 281 aa, chain + ## HITS:1 COG:lin0649 KEGG:ns NR:ns ## COG: lin0649 COG2514 # Protein_GI_number: 16799724 # Func_class: R General function prediction only # Function: Predicted ring-cleavage extradiol dioxygenase # Organism: Listeria innocua # 11 249 3 255 279 70 21.0 3e-12 MEVTEKMTEFQLEKAATLKTIAIRAKKVGEMVDFYKKVMGFVLKSEENNLSIWGTREAGT QLLILEETRKAEDFHNEEKQMAYFSIKVPTEKEFLQIAQRVLEQDYPIDESFQIGTRQSM FITDLEGNQFEIFHDEATANSTSEKQPIVLKDLISEDLEPHQGLAAGSYLAHVQLKTNNQ KEIKAYYEEVLGLKHNEKDQFVLEDGKATIGFQKPETSEVDQLPDPHLGLDFFTIKLSDQ DHILAMEQQLTAKNQEFFIDQKKAIVTVFDPIGLEWWFVLK >gi|307679193|gb|GL457054.1| GENE 182 178002 - 179045 901 347 aa, chain + ## HITS:1 COG:L114054 KEGG:ns NR:ns ## COG: L114054 COG1680 # Protein_GI_number: 15674027 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Lactococcus lactis # 9 330 11 308 328 217 40.0 3e-56 MYEKTKWKIQKMMKKGVFSGASFCFIEGEKEESNCWGLAQVKPTKEQLTSAMLFDVASLT KVVGTTTVILQLVEEGKIILDQSLQTYYPSFQDSNITIRHLLTHTANLQGYIPNRDQLNA QELKDAYNHSFHAGKAIGKKVVYTDAGTILLGFMLEEMFQKSMIEILSERVLLPLGMNES TFLPKNPLDCVPTELHEQRGLIRGATHDPKAFVLREHAGNAGLFSNVYDLTKFVRMYLNR GSYHNLQFLKKETIDLLLFNQVPAADKPRSLGWDFKYDVATQRPLLFHTGYTGTFLLIDV QQQSAFIFLSNRVHPEDHRNTYIEERDQLLATYLKEKSSVSDEMTSF >gi|307679193|gb|GL457054.1| GENE 183 179087 - 180058 1249 323 aa, chain + ## HITS:1 COG:L179409 KEGG:ns NR:ns ## COG: L179409 COG1482 # Protein_GI_number: 15672751 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannose isomerase # Organism: Lactococcus lactis # 1 321 1 315 315 408 63.0 1e-114 MQEPLFLQPVFQEKIWGGNRLHTLFGFDLPSDKIGEDWAISAHPHGVSTVLNGEFKGKKL DELWADHQELFGHAGGAVFPLLTKILDAEDDLSVQVHPDDAYGQKHEGELGKTECWYIID AEPGAEIIYGHHAKTKEELAEMIEEGRWDDLLRKVPVKKGDFYYVPSGTIHAIGSGILIL ETQQSSDTTYRVYDYDRTDDQGKTRELHIQQSIDVTTVPAKDPDLSIQQENQGQSSIVTY VKTDFFNVYEWRVSGILKVKKQAPYTLATVIEGVGRLITEDAAKADVATFDLKKGDSFIF PTDIPSWRFEGDLTIIASEPGSR >gi|307679193|gb|GL457054.1| GENE 184 180114 - 180659 369 181 aa, chain - ## HITS:1 COG:no KEGG:EF2588 NR:ns ## KEGG: EF2588 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 181 1 181 181 250 98.0 2e-65 MKKITPRIITIIAFSVALNYLGSTIALLLRLPIYLDSAGTIFTGALLGPLFGALTGILTS LVTGLTTDIFSLYYSPVQLCTGILAGLLLHQQLKVTKLPFKTLWLTIPGTVISSLITVCL FGGITSAGSSIIVQFLYGLGLNQLASVLLVQLITDYGDRLLSVIIVTAVIAALPKRSFIT K >gi|307679193|gb|GL457054.1| GENE 185 180662 - 181636 780 324 aa, chain - ## HITS:1 COG:PA0143 KEGG:ns NR:ns ## COG: PA0143 COG1957 # Protein_GI_number: 15595341 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Pseudomonas aeruginosa # 2 299 19 318 329 193 39.0 3e-49 MQKVIIDCDPGIDDTLALLYALASPELDVQAITVVCGNVPVEIGVENVFKCLEKVNRLDI PVYQGAASPLKRPFVSAQDTHGMDGLGETYFPRTSKIQAQALSAADYLAQTFQQATDCSI IALGPLTNIALALKKEPLLGRNLQRFVSMGGTFKSHGNCSPVAEFNYWCDPDAAAWVFEE LGAKIEMVGLDVTREIVFTPTILNYCQRLNPKMGNYLAEITQFYFDFHWKYERILGCVIN DPLAVAYFIDPTLCQGFSSYGQIVPDGIAMGQSMIDQYHFQQQPANCHVLTTVDSQQFFV KFLSILLNVQIDEIERDFKNLRMG >gi|307679193|gb|GL457054.1| GENE 186 181873 - 182562 912 229 aa, chain - ## HITS:1 COG:SP1590 KEGG:ns NR:ns ## COG: SP1590 COG3442 # Protein_GI_number: 15901432 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferase # Organism: Streptococcus pneumoniae TIGR4 # 4 224 16 236 260 285 63.0 4e-77 MSKELVVCHLYGNLLNTYGDNGNLLMLKYLTEKMGVTFRSEIISIYEPFDPEKYDLVFVG GGQDFEQLIISEDIQNKKEALTSYIENDGVLLAICGGYQLLGHYYVGAQGEKIKGIGALD HYTLSQDNNRFIGDIEIYNEEFDETYYGFENHNGMTFLGEGERPLGTVKQGKGNNGQDNG EGVVYKNVFGSYFHGPILARNKNLGIRLIRTALEKKYGEPIAIPETLYK >gi|307679193|gb|GL457054.1| GENE 187 182555 - 183907 1569 450 aa, chain - ## HITS:1 COG:L114717 KEGG:ns NR:ns ## COG: L114717 COG0769 # Protein_GI_number: 15673088 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Lactococcus lactis # 1 445 1 445 449 572 62.0 1e-163 MGIRSHLAIAAGKTSQWVLQTFFKGGSSYPGKLALKIDPKILDTLAKDYEIVVVTGTNGK TLTTALTVNILRQEFDEVLTNPTGANMEQGIVSTFLNAKAKKGQKKFAVLEIDEASLSRV TKYIQPKLFVFTNIFRDQMDRYGEIYTTYRLIMEGAAAAPEATILCNGDSPIFNSKETVN PRKYYGFNHLPPKEQLAHYNTDGVLCPKCNHILHYKMITYANLGDYYCPNCGFKRPELDV QLTEMVRMDNTSADFVIDGEEYGIAVGGMYNVYNALAATAVAEYYQVAPDKIRAGLAYDE KVFGRQETIKVGDKECTLVLVKNPVGLNQVIDMMGLAPYSFSLVSLLNANYADGIDVSWI WDGNHEAFADMDIPKVIAGGDRHEDMALRLKVAGIPEEKLLEIPDLEQVISEIKTLPTDH VYILATYTAVLQLRKSLTAQGYIQGGMNGV >gi|307679193|gb|GL457054.1| GENE 188 184113 - 184751 623 212 aa, chain - ## HITS:1 COG:VC0355 KEGG:ns NR:ns ## COG: VC0355 COG2964 # Protein_GI_number: 15640382 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Vibrio cholerae # 13 209 37 230 240 80 29.0 3e-15 MLSDEKLTFLTQIAKGLAGQFGENCEVVIHQINEDNINNSIVSIENGHVSSRHLGDGPSQ VVLEALKKDPSELNDHINYLTRTHDGRILKSSTMYFKDKNGQLDGIFAINYDITTLIAAE SNLKSLISTAEPEEDKDPDYIPQDVNELLDDLIHESVKLVGKPVPLMTKDDKIKCIQFLN NKGAFLVTKSGDKVSNFFNISKYTLYSYIDAK >gi|307679193|gb|GL457054.1| GENE 189 185153 - 186487 1595 444 aa, chain + ## HITS:1 COG:ssnA KEGG:ns NR:ns ## COG: ssnA COG0402 # Protein_GI_number: 16130781 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Escherichia coli K12 # 24 443 45 461 464 248 34.0 2e-65 MLLIGNGRLITRDAQNHFFENGCVAIDGQVVKQVGTTEDLKQAYPEATFIDAKGGVIMPG FINMHNHIYSTFARGLSLTNYHPKNFMDILVDQWWRIDRALTLEDTYQSGKVAYLDSIRN GVTTVFDHHASYGEITGSLTQLSNAADELGIRTCLCYEVSDRDGEQKMREAVQENAAFIK ASSLRKDDMQKAMMGMHAAFTLSDASLELCAANTPDGIGYHIHIAEDLADVHDSLKKYGK PIVNRLFDLGILGKQTMAGHCIHIGPHEMELLRDTDTMVVTNPESNMGNAVGCPPAMRMF NEYGILMGLGTDGYTNDVTESYKVGNVIHKHHLADPNAAWAEIPTMLFDNNPQMANRYFK TKLGVLEPNAAADVIIVDYHGPTPMTKENYNMHILFGMNGGMVTDTVINGEIRMRNREVQ GIDEEKVWHDAQTQAQSFWKRVNQ >gi|307679193|gb|GL457054.1| GENE 190 186518 - 189523 3035 1001 aa, chain + ## HITS:1 COG:ygfK_2 KEGG:ns NR:ns ## COG: ygfK_2 COG0493 # Protein_GI_number: 16130780 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Escherichia coli K12 # 439 954 1 530 582 394 42.0 1e-109 MSDIMHPISIEALLNWIFSEYQQDGTIFGIRKFYHADPTKTIPLFGEKMETPCGPAAGPH TQLAQNIIAAYLTGSRFFEVKTVQILDGEDLPVSKPCIAAADECYNVEWSTELRVPQAYD EYVKAWFVLKLLSKEFELGDPNGFIFNMSVGYDLAGIQSPKIDRYINEMQNAEGTPIWAE CQAAAKKYLFYFKKVDDLYIEAISPKVCHSITLSTLHGCPSDEIERIAAYLLSEKGLHSF IKCNPTMLGYEYARQTMDELGFDYMVFDDHHFKEDLQFEEAVPMLQRLQLLANSKNLSFG VKITNTFPVTIAANELPGDEMYMSGRSLFPLSISLAQKLSEAFDGKLQISYSGGADIFNS KEIFDAGIWPITMATTLLKPGGYQRMNQVANVLGAAEYPQMVHVNLDKLAQVVEKAKTQA RYQKSIKLPESTKLRKTVPLTDCYIAPCRSDGGCPINQDIPAYLRYVSEGNYLKALQVIV DKNPLPFITGTICAHPCMTKCTRQFYEESIHIREVKLEAAEHAYDELLTTLEKPQPKENA PKTAVVGGGPAGISAGYLLAREGMPVTVFEKSKTIGGVCSQIVPEFRISMESVQKDVQLA EFMGAEFRTGQEAPSLAELKNQGYTNVIYAIGAWKHGVLRLESGRALNSLEFLKANRENP TINPYGEQIVVVGGGNTAMDCARAATTLPGVKKVSVVYRRNKRNMPADEEELYLALEDGV DFLELLSPIKHENQQLTCEKMVLGERDASGRRRPVGTGEMIDIPADTVIAAVGEKVDTEF YQSLGIHTDNYGKVVSNQDTLETNIPGVYVIGDANLGPATIVEAIADATKAANNICLVHN HHYEKDNLNSDVAFVRNKRGILVTDEMSCSQASRCLECSTICESCMDVCPNRANIVVYVE GKPQIVHVDRMCNECGNCETFCPYASAPYKDKFTLFNSESDFYDSTNSGFYVQNPVDKIC LLRLWGTVSTIQLTDQGLDVPEDLIALMVTMIEEYAYCMQA >gi|307679193|gb|GL457054.1| GENE 191 189553 - 190926 1128 457 aa, chain + ## HITS:1 COG:BMEI1644 KEGG:ns NR:ns ## COG: BMEI1644 COG0044 # Protein_GI_number: 17987927 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Brucella melitensis # 2 455 7 457 489 351 41.0 2e-96 MSILLKGGTVVSAYNRRQLDIRIDGEQIVEMGANLPVENSQIEDVTGCYVLPGFIDAHTH LELNNGKGSLSTADNFTTGSQAAVAKGTTTVIDMATPNKGGSLKDCLATWNQLAEGKSSC DYTYHMSMIEWNPTIAAEIQEMIAAGITSFKMYMAYDNLRTTDAEIFEAMKEIKKVNGML GVHCENGDLVDELIQSYVSQGKLTPHYHPLSRPAAVEAEAVARYLMIAEMADLPVNIVHL STKRSLEAVERARQRGQSVYVETCPQYLLLDDHLYDAPNFEAAKYVCSPPLRKREDQQAL WQGIKEGAINTISTDHCSFNFHGQKTVGKDDFSKIPNGMPGVETRPELIYTEGVAKGRIT LEKMVALLSENIAKQFSMYPQKGVVQEGSDADLVVWDPRTTGVIAARTQLQNVDYTPYEG FETQGQARMVYLRGQKVAEAGQVILANQGKFVFRKAT >gi|307679193|gb|GL457054.1| GENE 192 190950 - 192143 1189 397 aa, chain + ## HITS:1 COG:STM1002 KEGG:ns NR:ns ## COG: STM1002 COG1171 # Protein_GI_number: 16764362 # Func_class: E Amino acid transport and metabolism # Function: Threonine dehydratase # Organism: Salmonella typhimurium LT2 # 19 396 22 399 404 412 52.0 1e-115 MEKIKWTANEMPKTEDKYLPLMSKEKIEKALAFHKSFPQYSETPLAELNHMAAYLGLNDF FVKDESYRFGLNAFKVLGGSFAMANYIAEKLKKDVLELTYDELTSDQLRSAFGQATFFTA TDGNHGRGVAWAANKLGQKSVVLMPKGSTQTRKENIEKEGATVTIEEVNYDECVRMANKM AEETENGVMVQDTAWDGYEKIPTWIMQGYGTMALEASQQLRKFGSERPSHVFVQAGVGSL AGAVIGYFANAFPENPPIMVVVEAQAADCLYQSAIKKDGEIRFVDGDLQTIMAGLACGEP NTISFDILKNHTSFFVSAPDWVSEKGMRMLGAPLKGDPQVVSGESGAVAMGLVATVMQDP DYQELREALQLDETSNVLMFSTEGDTDPDNYKKILWR >gi|307679193|gb|GL457054.1| GENE 193 192149 - 193459 1648 436 aa, chain + ## HITS:1 COG:ECs3745 KEGG:ns NR:ns ## COG: ECs3745 COG0624 # Protein_GI_number: 15832999 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Escherichia coli O157:H7 # 3 431 7 396 403 525 59.0 1e-149 MDFNAVNAAAEGYREDMVKFLRDLVKIPGESAEEGNKIARAKAEMEKLGFDKIDIDPQGN LLGYMGSGEKLIAFDGHMDTVGIGEMSNWKFDPYDGYETETEIGGRGTSDQEGGIVSAIY GAKIMKDLGLLSEKYTALVTVTVQEEDCDGLCWQYIIKEDGIRPEFVVSTEPTDGGIYRG QRGRMEIKVDVKGVSCHGSAPERGDNAIYKMADILQDVRALNNNGDTESTAIRSLVRMLD PKYNPEWQEARFLGRGTVTVSQIFHSSPSRCAVADGCTVSLDRRMTAGETWESCLEEIRN LPAVKKYGDDVTVSMYNYDRPSYTDLTYEIECYFPTWVIPENHDVTKALMETHKNLYGET RKGSVETVEMREERPLLDKWTFSTNGVSIMGRNGIPCIGFGPGAEAQAHAPNEKTWKDDL VRCAAVYAALPTVYCG >gi|307679193|gb|GL457054.1| GENE 194 193498 - 194691 1526 397 aa, chain + ## HITS:1 COG:ECs3743 KEGG:ns NR:ns ## COG: ECs3743 COG0078 # Protein_GI_number: 15832997 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Escherichia coli O157:H7 # 1 394 2 394 396 543 66.0 1e-154 METFKEYIEKLDKLEFEKMYENDFFLTWEKTRDELEAVFTVADTLRYLRENNISTKIFDS GLGISLFRDNSTRTRFSFASACNLLGLEVQDLDEGKSQISHGETVRETANMISFMADIIG IRDDMYIGKGNAYMHEVSESVQEGYKDGVLEQRPTLVNLQCDIDHPTQAMADALHLIHEF GGIENLKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVVLAHPEGYEIMPEVEEVA KKNAAEFGGNFTKTNSMAEAFKDADVVYPKSWAPFAAMEKRTELYGNGDQAGIDQLEQEL LSQNKKHKDWECTEELMKTTKDGKALYMHCLPADITGVSCEEGEVEASVFDRYRVELYKE ASYKPYVIAAMIFLSKVKNPQKTLTDLADKATPREVK >gi|307679193|gb|GL457054.1| GENE 195 194932 - 195876 1207 314 aa, chain + ## HITS:1 COG:yqeA KEGG:ns NR:ns ## COG: yqeA COG0549 # Protein_GI_number: 16130776 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Escherichia coli K12 # 1 309 1 308 310 356 63.0 3e-98 MGKRVVVALGGNALGNNLTEQMTAVKQTSKAIADLIEAGYEVILSHGNGPQVGMIQLAME EFSFNNPQYPVVPLSMCVAMSQSYIGYDLENALQEELRQRNISKAVTTIVTQVVVDENDP AFKKPTKPIGRFMTKEEAEQLVKEKNIQVMEDAGRGYRQVVASPKPKNIVELLTIQTLVD AGQTVIAGGGGGIPVIQEGNRLKGVNAVIDKDFCSERLAEQVDADLLVILTAVEKVCINF GKENQEALGNISTEKMKQYAQEGQFAPGSMLPKVEAAIKFAESKPGRKTLITLLEKAKEG LSGKTGTLIENKES >gi|307679193|gb|GL457054.1| GENE 196 195891 - 196271 447 126 aa, chain + ## HITS:1 COG:slr0709 KEGG:ns NR:ns ## COG: slr0709 COG0251 # Protein_GI_number: 16331956 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Synechocystis # 1 123 1 126 130 132 54.0 2e-31 MTNKMINSAQAPAAVGPYSHSVLAGNTLYISGQLGLDPQSGEMKATVEEQAKQAFINLGS ILKEVEMTYDNVVKTTVFLQHMSDFSKINEIYGNYFSEVLPARSCVEVAKLPKDGLFEIE AVAAKG >gi|307679193|gb|GL457054.1| GENE 197 196365 - 197684 404 439 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 11 439 6 427 447 160 28 6e-38 MNEKKEQALFEYDAKLSISEAIPMGLQHVVAAVVGIVTPGIMIAKVCQLSPSDTTILIQT SLIFSAVATLIQLFPIFGKVGSRLPVMMGASFAYVPILMAIGADFGIAAIFGSQLVGSIL VIIVGLFIKKIRVLFPPLVTGTVILSIGLSLFPVAIKYMAGGAGSADFGSARNWLVALLT FAIVFYFNYFAKGFLKLSAILNGMVIGYLISLALGMVSFEPVQNAKIVQVITPFHFGLDF QLVPIFTLVVMFIVDAVQAIGQFTATTVGAMDRDATDEELSGGIMGSGFTNFIGSLFGSI PVATFGQNVGLVTVTKVINKYVLVFASVILLIAGFVPKVAALLTTIPYAVIGGATISVFA SISMTGIRMIASQEMTPRNTGVVGTALAFGIGVTLSTGSLAGFPTWVTTIFGNSEVILTT LVAVLLNVILKPKKRVALE >gi|307679193|gb|GL457054.1| GENE 198 197778 - 198137 352 119 aa, chain + ## HITS:1 COG:AGc4647 KEGG:ns NR:ns ## COG: AGc4647 COG2005 # Protein_GI_number: 15889822 # Func_class: R General function prediction only # Function: N-terminal domain of molybdenum-binding protein # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 17 107 22 109 131 61 37.0 3e-10 MFTYSLNLKLKTDRNFFGPGVVEVLQKIQQTGSLNLAAKEMKMSYNKAWRIVRVAEEELS FPLIIKSVGGCNGGGSIVTDQGKELIDQYLLFEKKVYQQVEACFEEIFKEQDVVSEELK >gi|307679193|gb|GL457054.1| GENE 199 198188 - 199141 820 317 aa, chain + ## HITS:1 COG:CC2617 KEGG:ns NR:ns ## COG: CC2617 COG1975 # Protein_GI_number: 16126854 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family # Organism: Caulobacter vibrioides # 2 315 21 323 338 102 28.0 1e-21 MLLTIGTSSGSTPRSQGARMLVSAEGRIAGTVGGGAVEFQAEQVAKKLLLEKENAQRQFI LAPNNIADLGMVCGGNVTIFFHYLSWETPFLKELCESIETHFQNNQQGWLMTELDQNNLG KVSFYSETGELIGSTSWEGELSLLPKGIHCEQKEEITFLTEAILQVGKVYIFGSGHVARA LVPILNYLSFYCVVVDDRPEFLTAQAFPQAEELRVIPLENLAAFIEITADDYGIVITRGH NFDFIVAKQLLETPAKYIGVMGSKHKIASQVRRLKEVGYTMTEIERIFMPIGLDIAAETP EELAISIAGELIQQRYQ >gi|307679193|gb|GL457054.1| GENE 200 199262 - 201835 2340 857 aa, chain + ## HITS:1 COG:BH0748 KEGG:ns NR:ns ## COG: BH0748 COG1529 # Protein_GI_number: 15613311 # Func_class: C Energy production and conversion # Function: Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs # Organism: Bacillus halodurans # 169 848 15 741 760 344 33.0 4e-94 MYSIIVNGQSETCETNKKLMDFLREDLGLTGTKDGCNQGSCGACTVLVNGKASKACLFTL EKLAGKEVTTIEGLSQRQKDVYAYAFAKTGAVQCGYCIPGMVISAQGLLNKKPEPTKEDI QKALRGNICRCTGYVKIIEAIQLAAKMFCEETSIPEEHSNGKLGEDFQRVDAVEKTLGTG IYVDDIDIEGMLHASALRSAYPRAKVLSIDSTQALAHPDCVAVFTAKDVPGNNKIGHLEF ISDWDVMIPEGEITRYVGDAVALVVSKRKETLPEIKNLVEVDYEGMIPLTSCEAALAEGA PAIHEKGNILSHEHLVRGNADEVLANSAFVVTEHYSVPINEHAFMEPECAIAQPEGEGIL LFSAGQSIYDEQREVARMLGLDKEKIHVQSKLVGGGFGGKEDMSVQHHASLAAWLLKKPV KVLLSREESLMVHPKRHGMEMDFTTGCDEEGNLTAMKAVIYADTGAYASLGGPVLQRACT HAAGPYKYQTIDVEGFAVYTNNPPAGAFRGFGVCQTAFAIESNLNLLAEKVGLSPWEIRF KNAVAPGDTLPNGQLVSKNAALKEALLAVKDVYEQAEVAGISSFFKNSGVGVGLPDTGRC IISVEEGKIHVRTSAACIGQGMATVTTQIACETLNLPPEMIVAEAPDTRRTPNSGTTTAS RQSLFTGEATRRAAMQLRYELDMGRALSDLEGEEFYGEYSAKTDPLINDKKSPVSHAGYG YAAEVAILDDKGKVAKFVAAYDMGQVVNPRAAEGQIEGGIAMGMGYALTEKFALEEGYVK AKYATLGLVNATQVPPIETILVHADNLHEGLAYGIKGVGELATIPTAPALAGAYFALDGQ LRPSLPLENTPYQKKKR >gi|307679193|gb|GL457054.1| GENE 201 201849 - 202430 762 193 aa, chain + ## HITS:1 COG:APE2223 KEGG:ns NR:ns ## COG: APE2223 COG2068 # Protein_GI_number: 14601923 # Func_class: R General function prediction only # Function: Uncharacterized MobA-related protein # Organism: Aeropyrum pernix # 8 186 1 189 205 86 33.0 3e-17 MSLVSVIILASGNSQRMGQNKLFLKYQGKTFLEHTLTLVNQLDVLERILVVSPENQPAFP LPKNIQVILNHQWQEGQSSSIRLGTEQARGAGYLYLPSDQPLLTPKMLQPVLDKCQRNKI VVPLQKDGCPSSPVLFGNQFRQELLTLTGETGGRMICERFPEAVQMLRIATPGRLKDIDT PEEYRKLIQETNS >gi|307679193|gb|GL457054.1| GENE 202 202444 - 203592 1045 382 aa, chain + ## HITS:1 COG:CAC2354 KEGG:ns NR:ns ## COG: CAC2354 COG0520 # Protein_GI_number: 15895621 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Clostridium acetobutylicum # 4 380 1 374 379 239 38.0 8e-63 MKDLVYLNYAATSYKKFPATIEALTAYLAENQFMNYGRNAPLLREGLPLLETRQLLADFF QAPSAAQITFTNNATTSLNLALAGLLQPGDHVITTMLEHHAVARPLHLLEKERGISVTYV ACQKTGLLDIEDIQRAWRTNTKALVMTHASNVLGTILPIEECFQWAQQKGLLTILDAAQT AGFLPIKMTQMAIDVLAFTGHKSLYGLAGIGGLAFSERGAEAVKPLMTGGTGSHSNSFDQ PSFLPDKFEAGTLNNLGILSLNSSVKELNKIGLAAIQKHERTLMQNFFNGLSGLPVTILG TKDVAQTVPVVSITLWNQEETVVAQQLAEQYGIMTRAGLHCAPLAHETAGTLATGTLRFS FGWQTTPEEITWTIHALQELLI >gi|307679193|gb|GL457054.1| GENE 203 203608 - 204630 926 340 aa, chain + ## HITS:1 COG:Cj1504c KEGG:ns NR:ns ## COG: Cj1504c COG0709 # Protein_GI_number: 15792818 # Func_class: E Amino acid transport and metabolism # Function: Selenophosphate synthase # Organism: Campylobacter jejuni # 28 339 1 307 308 216 41.0 3e-56 MDFLSQCTSGGCGAKIESRVLNQLLQHLPETPANERLLVGFEHADDAAVYQITPEKALIS TVDFFSPMVNDPLSFGKIAVANALSDVYAMGGTVLYALNLVCFPQKMSKEWLEQMLLGGS LKLKEAGALLAGGHSIYDHEPKYGLAVTGEVHPENLWHNNTPQVGDVLILTKALGVGIIQ AAVRGQLAKQREQKIAQDSMERLNKYAAVNARSYAVHACTDVTGFGLLIHAKEMADNQVT LLIDTEALPTITGALAYAGECLVTAAGQRNRQTIGTTIDYSKISMEMQELLFDPQTSGGL LISVAADEAAACLAAIQKEDPVAKIIGEVLPKEQQAVVLL >gi|307679193|gb|GL457054.1| GENE 204 204646 - 205233 782 195 aa, chain + ## HITS:1 COG:no KEGG:EF2566 NR:ns ## KEGG: EF2566 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 195 1 195 195 322 98.0 6e-87 MKLVDALGKPCPIPVIETKKALAELGLAGGTIEVLVDNEVAIENLKKLATKKQATLTAKQ IEATVFSVKITVPKEATQQTSQSATDLVITIGSDQLGTGDEQLGRLLMKSYLQSLSEAET VPTQLLFFNRGAFLTNQAANTLDDLQQLAEKGTTIQTCGACLDFYHLTDTLAIGSITNMY EIVETMNQAAKVITL >gi|307679193|gb|GL457054.1| GENE 205 205254 - 205511 160 85 aa, chain + ## HITS:1 COG:no KEGG:EF2565 NR:ns ## KEGG: EF2565 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 85 1 85 85 169 97.0 2e-41 MEYLLTFPNTHYAVQAEQVLLTRKVAVRVFTLPPSLTDGCGIGLLINEAEITHIVCFLEE AKVRVASIFSVKNDLGERRYQLWSP >gi|307679193|gb|GL457054.1| GENE 206 205499 - 206254 470 251 aa, chain + ## HITS:1 COG:no KEGG:EF2564 NR:ns ## KEGG: EF2564 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 251 1 251 251 477 98.0 1e-133 MESLKKCFDLQGKEIVSIVGSGGKTSLMWALAKTYRKEAVLVSTTTKIGFPQRQLYDYFY TNHFEKITPNICGITLAGTAINNQTKLTMPAMTSLQILFQHFTKVFLEADGSKQRPLKGW SSYEPVILKETTTTIGVLPISVIGQKIDETTIHRLPLFLELTDAQQQEPITETLLAQLIA HPKGLFKESQGKRILCLNQTHTRREFVQAMNVCLQLPKSCFEKLDKIIACNMELEKGLIL WEKSVKTSKKN >gi|307679193|gb|GL457054.1| GENE 207 206218 - 207048 726 276 aa, chain + ## HITS:1 COG:yqeB KEGG:ns NR:ns ## COG: yqeB COG1975 # Protein_GI_number: 16130777 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family # Organism: Escherichia coli K12 # 11 269 269 526 541 238 47.0 1e-62 MGEISQNIQEKLVIVRGGGDLATGVIQKLWHVGFKILVLETECPLAIRRTVSVCDAIFQK EQRVEDLIAVRITSLKDCAKCWQQNKLPVFVDQTASAIQQLKPLIVIDAILAKKNLGTHR GMAPITIALGPGFSAPQDVDVVIETMRGHRLGRLYFEGTALPNTGIPGEIGGKSAERVVH APASGQVTHLKNIGDLVLKGEVLFFIDQVPVYSPLTGTLRGLISEKVTCYQGLKCADVDP RPVEKVDCLTISDKARALGGAVLEAIFMIGRRKNIL >gi|307679193|gb|GL457054.1| GENE 208 207291 - 207749 618 152 aa, chain + ## HITS:1 COG:SPy0721 KEGG:ns NR:ns ## COG: SPy0721 COG0716 # Protein_GI_number: 15674777 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Streptococcus pyogenes M1 GAS # 1 149 1 148 149 126 50.0 1e-29 MALVKIVYASMTGNTEEISEILEEQFQEAGVEVEREECSEVDVDFFDDADACIIATYTYG DGELPFEFEDFFDELTEKDLAGKPFGVVGSGDREYGEFFCKSAHDFVGAFEKAGAKKVAE TVEIENNAEEEDIELLKTFVQSVATTLSDSVA >gi|307679193|gb|GL457054.1| GENE 209 207805 - 208644 994 279 aa, chain + ## HITS:1 COG:TM1639 KEGG:ns NR:ns ## COG: TM1639 COG0543 # Protein_GI_number: 15644387 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases # Organism: Thermotoga maritima # 4 276 9 280 282 325 53.0 6e-89 MFNILQSTQLSSNTFDFWLEAPRIATHAQAGQFVILRIDEKGERIPLTIAETNPQAGSIR IIFQVIGKTTAALSQLKTSDSLLDITGPLGMPTEVKQYGTVMVVGGGVGIAAIYPIIKAL KEAGNRVITILGARTAELVLLQEECRCYSDELIITTDDGSLGKKGLVTEAMEEVIARESV AYSWAIGPSIMMKFCTLTAEKHQLPIYVSLNPIMIDGTGMCGGCRVTVDGTMKFACVDGP EFKGNEVNWDEFINRMKQYQEEEAVCFTDRLKEQVEKNG >gi|307679193|gb|GL457054.1| GENE 210 208637 - 210055 1493 472 aa, chain + ## HITS:1 COG:TM1640 KEGG:ns NR:ns ## COG: TM1640 COG0493 # Protein_GI_number: 15644388 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Thermotoga maritima # 8 461 5 459 468 588 64.0 1e-168 MARKSRIKTPIAEQAPTIRKNNFEEVCLGYTLAEGQEEAVRCLQCKNAPCITKCPVMIDI PGFILAIREGNMEQAADILSKYTNLPAICGRVCPQEKQCEQVCKLGKAKNFEPVAIGKLE RLVADWALENHKFPKKTAEPTKGKVAVVGSGPSGLTVAGDLAKLGYEVIIFEALHEAGGV LTYGIPEFRLPKKIVKQEIASIEALGVTIETNVVVGKTITMEEIMLEFDACYLSVGAGAP NFMGIPGTSLNGVYSSSEFLTRINLMHSYEFPEYDTPIKRAKNVVVIGGGNVAMDAARSA KRLGAENVNIVYRRSLEELPARIEEYHHSLEEGINYYWLTNPIAYLDDQQGNLAGVECVK MVLGEPDASGRRRPEPIPNSTFTIPADAVIEAIGQGANRVLLSTYPEIELNQWGYIQADP KTGATSIPGVFAGGDIVTGAATVILAMGAGKIAANAIDQYVKTQKTTVTSNA >gi|307679193|gb|GL457054.1| GENE 211 210076 - 213609 3811 1177 aa, chain + ## HITS:1 COG:lin0824_1 KEGG:ns NR:ns ## COG: lin0824_1 COG0674 # Protein_GI_number: 16799898 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit # Organism: Listeria innocua # 2 411 4 411 414 600 70.0 1e-171 MKKTMDGNTAAAYISYAFTEVAAIYPITPSSTMAELVDEWAESGLKNIYGQKVQVIEMQS EAGAAGVVHGSLKTGALTTTYTASQGLLLMIPNMYKIAGELLPSVFHVAARAVTTSALSI FGDHGDVMATRQTGFCMLAESSVQEVMDLSAVAHLASLEGSLPFVNFFDGFRTSHELQKI EVIDYDDLKEMVNQEAVTRFRMGGMNPNHPTVSGTAQNPDIHFQQRETVNKNYEEMPKIV QKYMKKINNLRGTTYDLTDYYGVEDATEVIISMGSASPVIKQTVDYLNQQGRKVGFINIH LYRPFPTENLLEKLPATVEKVAVLDRTKESGAEGEPLLLDVQSALYQHENRPIVIGGRYG LGSKDVAPNQIKAIYDHLLLPFKELKQRFTVGIVDDVTYQSLPEEPTLDLTPDTTFQAKF WGFGSDGTVGANKQAIKIIGDHTDLYAQAYFSYDSKKSGGLTVSHLRFGKEPITSTYLIE QADFIACHNASYLHKYDLLKGLKDGGTFLLNTIWDQEKVHRLLPAKLKKYIGEHQIKFYI INAVELARKVGLGRRINTVMSTAFFEVTDILTKEQYLPLLKEEVKKTYGKKSMEIVEKNY QAIDATFESLQEIVVPEDWATIVLEPENQESEAPAFVTNILEPINRQEGDQLTVSDLIEN GMKGGAIPMGTAAYEKRGIALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAP AGFAMREMRGTDGLMYRIQVSLEDCTGCGLCVQACPVKDKAILMKPYETQKEQAMNWAFA VTLKQKANPVKKLSVKGSQFNQPLMEFSGACEGCGETPYIKLLTQLFGDRMMIANATGCS SIWGGSSPVTPYTTNECGQGPAWSNSLFEDNAEYGYGMYIANRTKRQHLASLVEESLAKN VGSDSLQALLNDWLEHMAEGEGTQQRATKLAAALSEEADEDPLLTKIYEQKDLLVKTSQW IVGGDGWAYDIGFSGIDHVLASGEDVNIFVMDNEVYANTGGQTSKATPASAIAKFSAGGK HTSKKDLGMMAITYGNVYVAQVALGANSMQTIKAIDEAERYPGPSIIIGYTPCINHGVKG GMVRTLDQAKEAVESGYWPLYRYNPELVKKGKDPMVIDYKKTDFDKMRDFLEKQTRYSAL HTIKENQEVVEHLLDKTKEDAIERSESYNKLVTHMKK >gi|307679193|gb|GL457054.1| GENE 212 213646 - 215061 1208 471 aa, chain - ## HITS:1 COG:lin0992 KEGG:ns NR:ns ## COG: lin0992 COG0168 # Protein_GI_number: 16800061 # Func_class: P Inorganic ion transport and metabolism # Function: Trk-type K+ transport systems, membrane components # Organism: Listeria innocua # 23 471 6 445 445 330 44.0 3e-90 MNHTRLLWLAQRKSDRFIRKNFSSIQIIVAYYILMTVISYLLFCLPIFREPDSHVPFIDL FFLAISTVSVTGLTTVDINSVFNDRGIVLLEVLFQVGGLGIMMISTVFFILSKRRITLKQ RQLIMTDMNQPRLSGIVRLIRTTFLILIWFQVIFGSLFSLYFYISGYYTNWRDAIFYGFY QAISAVTNSGFDISGDSIIPFAHDYLFLLAIMFLIFIGGIGFPVLLEIHEWLHFKKKNFR KKKRGLPFRFSLFSKIALLAFIVLFIGGTILIYLLEKDHLFLTMNESGRWVSSMFYSMTT RNAGLQINDLGDFQITTLIIFSVLMFIGCSPSSVGGGVRTTTVAIIGLYLLAFLKSEDDI SVFSRKIDDDDVKKSIVVFMLSLIMCFFAVVFLSATENLPLISIIVEVASAFGTTGLSLG ITDDLTTVGKLMIALLMFIGRIGMLYTLMIFVPKETRDLGYEYPSEKIIIG >gi|307679193|gb|GL457054.1| GENE 213 215431 - 216948 2235 505 aa, chain + ## HITS:1 COG:lin0374 KEGG:ns NR:ns ## COG: lin0374 COG1053 # Protein_GI_number: 16799451 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Listeria innocua # 5 504 9 506 506 612 67.0 1e-175 MKKVLMGVLSLGLLLGAATGCTSDQEKAAGKTKASSEKTEATSGASANGYTDPSELKDSY DVVIVGSGGAGMTAALQAKEAGMNPVILEKMPVAGGNTIKSSSGMNASQTKFQEKEGIKD SNDKFFEETLKGGKGTNDQELLRYFVDHSAEAIDWLDTKGITLSNLTITGGMSEKRTHRP ADGSAIGGYLVDGLVRNVREEKIPLFVDADVTDLVEENGQIDGVKVKMKDDKEKTVKAKA VVVTTGGFGANEKLITQYKPELKNYVTTNQEGTTGDGIQMIQKVGGALVDMKEIQIHPTV QQSDAFLIGEAVRGEGAILASQKGERFVNELDTRDKVSAAINALPEKSAYLVFDQGVRDR AKAIDFYDQKGFVEKGETIEELAEKIGMPADTLKATIDTWNQDVNAKDDKQFGRTTGMEA DLSTAPYYAIKIAPGIHHTMGGVKINTKTEVLREDGTPIKGLYAAGELTGGLHGQNRIGG NAIADIIIYGRQAGTQSAEFASAQK >gi|307679193|gb|GL457054.1| GENE 214 217175 - 217759 497 194 aa, chain + ## HITS:1 COG:L184871 KEGG:ns NR:ns ## COG: L184871 COG1435 # Protein_GI_number: 15672575 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine kinase # Organism: Lactococcus lactis # 1 188 1 188 189 308 75.0 3e-84 MAQLFFKYGAMNSGKTIEILKVAHNYEEQDKPVVLMTSGLDTRDGVGKVSSRIGLRRDAI PIFEETNVFDLINDLSYKPFCVLVDECQFLNKHHVIEFARIVDELDIPVMAFGLKNDFRN ELFEGSKYLLLYADKLEELKTICWFCHKKATMNLHYIDGKPVYEGDQVQIGGNEAYYPVC RKHYFHPKTVNEEQ >gi|307679193|gb|GL457054.1| GENE 215 217771 - 218844 1439 357 aa, chain + ## HITS:1 COG:SPy1141 KEGG:ns NR:ns ## COG: SPy1141 COG0216 # Protein_GI_number: 15675118 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor A # Organism: Streptococcus pyogenes M1 GAS # 1 356 3 359 359 479 73.0 1e-135 MYDQLQSIEDRYEELGELLSDPAVISDTKRFMELSKEEANTRETVEVYRRYKQVVEGISD AEELLSENLDAEMAEMAKEELSDLKKEKEVLEDRIKILLLPKDPNDDKNIIMEIRGAAGG DEAALFAGDLFNMYQKYAEAQGWKAEVLEANVTGIGGYKEVIMMISGDNVFSKLKYESGA HRVQRVPSTESQGRIHTSTATVVVMPEAEEVEIELADKDIRVDIYHASGAGGQHVNKTAS AVRLTHLPTGIVVAMQDERSQLKNREKAMKVLRARVYDQIQQEAQSEYDANRKSAVGTGD RSERIRTYNFPQNRVTDHRIGLTIQKLDQILAGKLDEIIDALVLYDQTSKLEEMQNG >gi|307679193|gb|GL457054.1| GENE 216 218837 - 219670 236 277 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169796031|ref|YP_001713824.1| putative adenine-specific methylase [Acinetobacter baumannii AYE] # 49 249 74 296 334 95 30 2e-18 MAKRYFEVLNWASSFLEAQGKEGYAIHYVFLERKGWDKTQWLLHMQEEMPKEEEKQLKTD LAQLLTDYPAQYLLGQAEFYGHSFIVNEHTLIPRPETEELVERCLKANPDTPLTVVDVGT GTGAIAISLKLARPNWRVIAIDLSEEALTVAKKNAQVLGADIEFYHGNGLQPVASEKIDL LISNPPYISEQEWHLMDASVRTYEPKTALFAENNGLALYQQLIHESQTMLKADGKIYFEI GFQQGAALQELLSAAYPQKTIKIEKDLSGNDRLAIAE >gi|307679193|gb|GL457054.1| GENE 217 219714 - 220736 1344 340 aa, chain + ## HITS:1 COG:lin2685 KEGG:ns NR:ns ## COG: lin2685 COG0009 # Protein_GI_number: 16801746 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Listeria innocua # 13 336 20 341 345 302 48.0 5e-82 METKKLTKQEIAQAAAAIQAGELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLI VHVNNVEMVKKYVATLPEVATKLVSAFWPGPLTLIFNVPSDTFSKTVTGGLETVAFRMPD NQATLALIEQANVPLVGPSANTSGKPSPTSAEHVYHDLQGKIAAILDDGPTQIGVESTVL DLTAEDGVPVILRPGAITKEQLESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWI ISGQTAEWQAAIQQAKEQQEKIGLFLSDEQAAQLDTENTFVYSYGAETVENATKELFAGL RALDEQGATTIFAQGFAETGLGTAYMNRLKKSANQKFFEK >gi|307679193|gb|GL457054.1| GENE 218 220812 - 222050 1545 412 aa, chain + ## HITS:1 COG:SP1024 KEGG:ns NR:ns ## COG: SP1024 COG0112 # Protein_GI_number: 15900895 # Func_class: E Amino acid transport and metabolism # Function: Glycine/serine hydroxymethyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 2 411 7 416 418 594 72.0 1e-170 MDYKTYDPDLWNAIAREEERQENNLELIASENVVSKAVMAAQGSILTNKYAEGYPGKRYY GGCEFIDIVENLAIDRAKELFGAKFANVQAHSGSQANTAAYLSLVEPGDTILGMDLSAGG HLTHGSPVNFSGKTYNFVSYGVDPSTEVIDYDVVRILAREHRPKLIVAGASAYSRTIDFK RFREIADEVDAKLMVDMAHIAGLVASGLHPNPVPYADIVTSTTHKTLRGPRGGLILTNSE ELAKKVNSSIFPGIQGGPLEHVIAGKAAAFKEALDPSFAEYSQQVIANAQAMTKVFNQAP EARLISGATDNHLLLIEVTGFGLNGKEAEAILDSVNITVNKNSIPFEQLSPFKTSGIRIG TPAITSRGFKEEDAVEVAKLIVQVLKDPENTAVHDEVKAAVAALTKKYPLYN >gi|307679193|gb|GL457054.1| GENE 219 222182 - 222811 889 209 aa, chain + ## HITS:1 COG:SP0745 KEGG:ns NR:ns ## COG: SP0745 COG0035 # Protein_GI_number: 15900640 # Func_class: F Nucleotide transport and metabolism # Function: Uracil phosphoribosyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 209 1 209 209 333 78.0 1e-91 MGKFQVIDHPLIQHKLTMIREKNCGTKVFREVVNEIAMLMAYEVSRDMPLEDVVIETPMG KSTQKTLSGKKVAIIPILRAGIGMVDGILELIPAAKVGHVGLYRDEETLQPHEYFVKLPE DIASRQLFVVDPMLATGGSAIMAIDSLKERGASNIKFVCLVAVPEGVKALQEAHPDVDIY TAALDERLNEDGYIVPGLGDAGDRLFGTK >gi|307679193|gb|GL457054.1| GENE 220 222916 - 223188 303 90 aa, chain + ## HITS:1 COG:no KEGG:EF2548 NR:ns ## KEGG: EF2548 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 90 1 90 90 174 97.0 1e-42 MKKNKKVLHAIAVIASMMSVLMYVSYIPQIYGNLHGEKGNPTQPLVAMINCIFWTIHGLY GDDGETRDKSIIFANVPGIIFGFFAFITAL >gi|307679193|gb|GL457054.1| GENE 221 223262 - 223498 216 78 aa, chain - ## HITS:1 COG:no KEGG:EF2547 NR:ns ## KEGG: EF2547 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 78 1 78 78 134 100.0 2e-30 MSNFNGMVTPVVPSDAGKDFAVDTHVTFLVHGQPQTGVVTKQLKNAAVVEIDETQKNNHL MVHSNGVIVINYKQLKKI >gi|307679193|gb|GL457054.1| GENE 222 223854 - 225023 758 389 aa, chain - ## HITS:1 COG:lin0071 KEGG:ns NR:ns ## COG: lin0071 COG0582 # Protein_GI_number: 16799149 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Listeria innocua # 5 385 11 398 400 176 32.0 8e-44 MPIEKGTIERLKSGNYRLRVTVGYNENGNPIRINKTVEVKSQRKAYAELDDWIEELEEHG YEDISTITFENFYNNMWKKEAKTILEPRTIREYSDIIDKRFLPSLKNKKMREIKPFQIKD IVLAATPLSKRSETLSRKTKKRFLNALSSVFSVARDQYRIITHNPVADVRLPKESVKKKG TPQPYSIEEVRLMLDALEEHANLKTKALVMTAFITGAREGEIAALEESDFDFTAMTVQFH QRIVLDENKKYQRRDGLKASESKTIPVPQSYLEIMEGFMAINQTARKELRIDPKHKYVFG SPDGNFELPTSLYRNWNRFIKRAGLRQIRFHDLRHTSASFLLADPTIPIKTVQELLGHKD YRTTMNIYGHALEETKRTASDRFSDFLNK >gi|307679193|gb|GL457054.1| GENE 223 225137 - 225751 568 204 aa, chain - ## HITS:1 COG:no KEGG:EF2042 NR:ns ## KEGG: EF2042 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 204 1 204 204 339 96.0 3e-92 MFLFGNKEEKKVKKAEEKQIKEYFKNNHDIVIGGIYFNDSDKKIFIPKSISESRKQQVIN YDDLINYTDIFVGGNIKKHHGITRAVVGGVLAGPIGALVGAGTGGKEFTSIKQLGVMLHL PNNQTVKYMLITTETKTDSMIGKGLMDRYNELIAKLDQILKTNSNNKDNTIISSADEIRK FKALLDDGIITEEEFEIKKRELLQ >gi|307679193|gb|GL457054.1| GENE 224 225765 - 226499 753 244 aa, chain - ## HITS:1 COG:no KEGG:EF2795 NR:ns ## KEGG: EF2795 # Name: not_defined # Def: LysM domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 19 244 131 354 354 177 50.0 4e-43 MKKIVLLSISLIMLAACSNETKKEVETKETSATVTSTTKDSSSRTKEKESSLTTETSNIS ASSVENETQTQVSLGDFVGGWGIPQSDNLFFINADGTISSATQSNVPLQNLSFSVDTNGN QTMSYVLNNTAGTLVKNIDGSLSAGGQVYSYLGNITMEQLIERNNQGQQPPVPTQNQDEQ PVVANGQESQPKSENNQEQEVYDQLQDGETGKQFAERHGLSVEQLEELNNGNTTYYPNMY LRVK >gi|307679193|gb|GL457054.1| GENE 225 226585 - 226998 352 137 aa, chain - ## HITS:1 COG:no KEGG:LAR_0770 NR:ns ## KEGG: LAR_0770 # Name: not_defined # Def: hypothetical protein # Organism: L.reuteri_K # Pathway: not_defined # 1 129 1 133 134 63 28.0 4e-09 MRKQIEMIVKELDVIILEKEDLDADGHYIASINTIVLKGSLDEWNKRKTLLHELGHASEH QHNYQLYNLAFSLHSKMEHEADVFMIDNLLDDYMSKTGLTVEQVNYMRFIEDADIDARYE ECIRTLLFNKLQRINFA >gi|307679193|gb|GL457054.1| GENE 226 227008 - 227349 410 113 aa, chain - ## HITS:1 COG:L43680 KEGG:ns NR:ns ## COG: L43680 COG1396 # Protein_GI_number: 15672021 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 1 100 1 105 128 83 44.0 1e-16 MTVFERVKTLAKNRSKTMKQVTLDLGYSENYFYSLKSGKQPSAEKLKELADYFNVSVDYL LGRTENPNPVDKNQLTVEEALSSVMSSDGKPLTENDREILSGIIEAYLEKKNK >gi|307679193|gb|GL457054.1| GENE 227 227639 - 227830 314 63 aa, chain + ## HITS:1 COG:no KEGG:EF2039 NR:ns ## KEGG: EF2039 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 63 1 63 63 98 88.0 1e-19 MPDTTTGRTKIREYFDKKGISLVTVATYFNIPKQDLNDYLSGKNQSKKAHETLTAIIEYY KIR >gi|307679193|gb|GL457054.1| GENE 228 227842 - 228123 248 93 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315143727|gb|EFT87743.1| ## NR: gi|315143727|gb|EFT87743.1| conserved domain protein [Enterococcus faecalis TX2141] # 18 93 18 93 93 137 100.0 4e-31 MTNLALLNLDDLRLLLAEKSIPNEIWNSKQAAIFLTTSVPTLLKEVELGNIPGVRIGKDW KFSSLALYEYVARKEGKQNEQFSNNEKSASSNK >gi|307679193|gb|GL457054.1| GENE 229 228077 - 228790 652 237 aa, chain + ## HITS:1 COG:PM1774 KEGG:ns NR:ns ## COG: PM1774 COG3646 # Protein_GI_number: 15603639 # Func_class: S Function unknown # Function: Uncharacterized phage-encoded protein # Organism: Pasteurella multocida # 5 137 29 152 239 67 32.0 3e-11 MNNLVIMKNLQAVTSSLQVAEVFDKQHKDVLEAIDTKIQSAENSAHYQIMFAEGEYKDSR GRKQRLYYMNRDGFSFIAFGFTGKKADTFKLKYIEAFNLMEKEIQQPKLPTSQRELAILA LSANEETNERVDVIEKEVADLKDNQKIGADDYGYLSRRVHQRVAEVAKGFGKITKEQRGK LYKDINSGIKQITGVGTRSQLREKHYPMVIEYINDWEPSTATKTVVRQMSLDLNDIA >gi|307679193|gb|GL457054.1| GENE 230 228801 - 228986 283 61 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315143729|gb|EFT87745.1| ## NR: gi|315143729|gb|EFT87745.1| conserved domain protein [Enterococcus faecalis TX2141] # 1 61 1 61 61 78 100.0 1e-13 MAYTTEQESWILNQIKKERKQLQDDRAALRQSEQLTEGKAYQIEKDIEFLRYLEIQNRMH I >gi|307679193|gb|GL457054.1| GENE 231 228998 - 229171 149 57 aa, chain + ## HITS:1 COG:no KEGG:EF2845 NR:ns ## KEGG: EF2845 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 57 21 77 79 61 73.0 9e-09 MRKIYNLRRIAVLLIVFGLGLIVGGNFNPIIQNVYIGLFIIWTLFYDLALEDREVKK >gi|307679193|gb|GL457054.1| GENE 232 229168 - 229278 121 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTRKDKLEQTKKLADLWYQQQKGRIYIAQQKKRRGI >gi|307679193|gb|GL457054.1| GENE 233 229279 - 229473 333 64 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307280607|ref|ZP_07561655.1| ## NR: gi|307280607|ref|ZP_07561655.1| hypothetical protein HMPREF9515_01649 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9515_01649 [Enterococcus faecalis TX0860] # 1 64 1 64 100 115 96.0 1e-24 MPKLYDFKKAKELIDIEVDNADVDKVFLGTLSDYYWTAETVWEKGKYIIDLGKVKTIAGI PGSD Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:16:44 2011 Seq name: gi|307679192|gb|GL457055.1| Enterococcus faecalis TX2141 genomic scaffold Scfld253, whole genome shotgun sequence Length of sequence - 878 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 645 521 ## EF1279 DNA replication protein, putative 2 1 Op 2 . - CDS 650 - 877 124 ## MPTP_1437 hypothetical protein Predicted protein(s) >gi|307679192|gb|GL457055.1| GENE 1 3 - 645 521 214 aa, chain - ## HITS:1 COG:no KEGG:EF1279 NR:ns ## KEGG: EF1279 # Name: not_defined # Def: DNA replication protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 116 1 116 256 211 87.0 1e-53 MAERRMFAKTIIDSDAFLDMPLSTQSLYFHLSMRADDDGFINNPKKIQRMVGCGDDDLKL LMAKRFILVFDSGVIVIKHWKIHNYIRNDRYKPTLYQEEKAELAEKNSKAYTFKTEVIES ENHLGIPDDNRMGYQMDTQVRLGKDRLVKDKKKNSVEPSSTMPEQFEKVWKTYPKKTNKK KAREQFLKKFKTEEDLESFKKGYKDYLAYIKLND >gi|307679192|gb|GL457055.1| GENE 2 650 - 877 124 75 aa, chain - ## HITS:1 COG:no KEGG:MPTP_1437 NR:ns ## KEGG: MPTP_1437 # Name: not_defined # Def: hypothetical protein # Organism: M.plutonius # Pathway: not_defined # 2 75 154 228 228 74 45.0 1e-12 KCCICGKHADVCHIEVVGMGRNRKKINHETFTFYAGCRQHHQEEHQVGTKNFLNKYQIKP VKLNNEERKKLNIGG Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:17:26 2011 Seq name: gi|307679191|gb|GL457056.1| Enterococcus faecalis TX2141 genomic scaffold Scfld272, whole genome shotgun sequence Length of sequence - 118489 bp Number of predicted genes - 120, with homology - 113 Number of transcription units - 55, operones - 27 average op.length - 3.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 69 - 182 147 ## 2 1 Op 2 . - CDS 179 - 352 149 ## EF2845 hypothetical protein 3 1 Op 3 . - CDS 364 - 549 285 ## gi|315143729|gb|EFT87745.1| conserved domain protein 4 1 Op 4 . - CDS 560 - 1270 732 ## COG3646 Uncharacterized phage-encoded protein - Prom 1317 - 1376 5.1 + Prom 1244 - 1303 7.2 5 2 Tu 1 . + CDS 1348 - 1560 247 ## gi|315143621|gb|EFT87637.1| hypothetical protein HMPREF9495_02537 + Term 1572 - 1611 5.1 6 3 Op 1 . - CDS 1554 - 1724 240 ## gi|255972575|ref|ZP_05423161.1| predicted protein 7 3 Op 2 . - CDS 1782 - 1943 212 ## gi|315143623|gb|EFT87639.1| hypothetical protein HMPREF9495_02539 8 3 Op 3 . - CDS 1981 - 2187 275 ## COG1396 Predicted transcriptional regulators - Prom 2224 - 2283 5.7 + Prom 2184 - 2243 4.8 9 4 Op 1 . + CDS 2342 - 3049 619 ## COG1396 Predicted transcriptional regulators 10 4 Op 2 . + CDS 3012 - 3083 109 ## + Prom 3101 - 3160 5.0 11 5 Op 1 . + CDS 3214 - 3396 304 ## gi|315143626|gb|EFT87642.1| conserved hypothetical protein 12 5 Op 2 . + CDS 3425 - 4774 754 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs - Term 4564 - 4603 -1.0 13 6 Tu 1 . - CDS 4771 - 4878 62 ## - Prom 5086 - 5145 9.7 - Term 5263 - 5306 12.6 14 7 Tu 1 . - CDS 5321 - 6697 1906 ## COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) - Prom 6757 - 6816 6.6 - Term 6848 - 6904 14.3 15 8 Tu 1 . - CDS 6908 - 7729 1041 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins - Prom 7755 - 7814 6.0 - Term 7837 - 7872 5.3 16 9 Op 1 42/0.000 - CDS 7873 - 8712 955 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components - Prom 8741 - 8800 4.8 17 9 Op 2 25/0.000 - CDS 8874 - 9566 233 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 18 9 Op 3 . - CDS 9592 - 10545 1048 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin - Prom 10598 - 10657 4.2 - Term 10640 - 10703 16.3 19 10 Op 1 . - CDS 10711 - 11562 691 ## COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase - Prom 11597 - 11656 4.1 - Term 11681 - 11730 12.1 20 10 Op 2 . - CDS 11743 - 11988 337 ## COG4466 Uncharacterized protein conserved in bacteria - Prom 12029 - 12088 4.2 21 11 Op 1 5/0.143 - CDS 12103 - 12669 776 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 22 11 Op 2 6/0.143 - CDS 12755 - 13285 546 ## COG3688 Predicted RNA-binding protein containing a PIN domain 23 11 Op 3 7/0.143 - CDS 13300 - 14157 570 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 24 11 Op 4 8/0.000 - CDS 14147 - 14545 345 ## PROTEIN SUPPORTED gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 25 11 Op 5 4/0.143 - CDS 14542 - 15954 1642 ## COG0215 Cysteinyl-tRNA synthetase 26 11 Op 6 . - CDS 15947 - 16486 616 ## COG1045 Serine acetyltransferase - Prom 16506 - 16565 8.2 - Term 16509 - 16562 14.0 27 12 Op 1 . - CDS 16646 - 16723 57 ## 28 12 Op 2 3/0.143 - CDS 16756 - 18213 1928 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases 29 12 Op 3 . - CDS 18266 - 18739 496 ## COG0245 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 30 12 Op 4 2/0.143 - CDS 18758 - 19903 1424 ## COG4956 Integral membrane protein (PIN domain superfamily) 31 13 Op 1 1/0.143 - CDS 20007 - 21377 1432 ## COG1066 Predicted ATP-dependent serine protease 32 13 Op 2 . - CDS 21456 - 21935 517 ## COG0756 dUTPase + Prom 22171 - 22230 8.5 33 14 Op 1 22/0.000 + CDS 22261 - 23076 949 ## COG0263 Glutamate 5-kinase 34 14 Op 2 . + CDS 23069 - 24316 1277 ## COG0014 Gamma-glutamyl phosphate reductase + Term 24320 - 24365 12.5 - Term 24309 - 24353 8.3 35 15 Tu 1 . - CDS 24408 - 25364 735 ## COG2378 Predicted transcriptional regulator - Prom 25596 - 25655 6.5 + Prom 25338 - 25397 3.7 36 16 Op 1 . + CDS 25420 - 25887 609 ## EF0035 hypothetical protein 37 16 Op 2 . + CDS 25895 - 26404 509 ## COG4283 Uncharacterized conserved protein + Term 26452 - 26491 3.1 38 17 Tu 1 . + CDS 26948 - 29563 2241 ## COG4485 Predicted membrane protein + Term 29586 - 29618 -0.7 - Term 29755 - 29797 0.7 39 18 Tu 1 . - CDS 29832 - 30338 104 ## gi|312901266|ref|ZP_07760549.1| hypothetical protein HMPREF9510_02059 - Prom 30455 - 30514 4.4 - Term 30822 - 30882 10.2 40 19 Tu 1 . - CDS 30889 - 33480 2197 ## COG2898 Uncharacterized conserved protein - Prom 33596 - 33655 4.0 - Term 33607 - 33660 17.6 41 20 Op 1 . - CDS 33664 - 34938 1524 ## COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases 42 20 Op 2 1/0.143 - CDS 34953 - 35969 829 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains 43 20 Op 3 1/0.143 - CDS 35944 - 37245 1122 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 44 20 Op 4 . - CDS 37299 - 39080 1109 ## COG3711 Transcriptional antiterminator - Prom 39149 - 39208 4.3 - Term 39185 - 39236 8.5 45 21 Op 1 . - CDS 39248 - 39628 466 ## COG0251 Putative translation initiation inhibitor, yjgF family - Prom 39663 - 39722 6.0 46 21 Op 2 . - CDS 39728 - 40105 426 ## COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities 47 21 Op 3 3/0.143 - CDS 40157 - 40933 597 ## COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities 48 21 Op 4 . - CDS 40957 - 41658 711 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 49 21 Op 5 3/0.143 - CDS 41665 - 42525 911 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 42583 - 42642 4.4 50 22 Tu 1 . - CDS 42674 - 43444 696 ## COG1737 Transcriptional regulators - Prom 43467 - 43526 8.4 + Prom 43424 - 43483 9.4 51 23 Tu 1 . + CDS 43642 - 43845 236 ## EF0026 hypothetical protein + Term 43854 - 43891 6.0 - Term 43835 - 43887 8.4 52 24 Tu 1 . - CDS 43893 - 44420 708 ## COG3247 Uncharacterized conserved protein - Prom 44452 - 44511 8.0 - Term 44610 - 44660 8.2 53 25 Tu 1 . - CDS 44668 - 45045 419 ## COG4687 Uncharacterized protein conserved in bacteria - Prom 45075 - 45134 6.0 - Term 45125 - 45168 9.3 54 26 Op 1 13/0.000 - CDS 45207 - 46118 1315 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 55 26 Op 2 13/0.000 - CDS 46141 - 46944 1137 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 56 26 Op 3 . - CDS 46979 - 47971 1279 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB - Prom 48051 - 48110 6.2 - Term 48136 - 48173 -0.7 57 27 Tu 1 . - CDS 48206 - 48718 558 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB - Prom 48847 - 48906 8.2 - Term 48866 - 48916 13.3 58 28 Tu 1 . - CDS 48921 - 51806 2747 ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain - Prom 51846 - 51905 10.0 + Prom 51966 - 52025 7.6 59 29 Tu 1 . + CDS 52059 - 53690 1833 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains + Term 53789 - 53856 18.5 60 30 Tu 1 . - CDS 53868 - 54737 966 ## COG1307 Uncharacterized protein conserved in bacteria - Prom 54760 - 54819 10.5 - Term 54794 - 54848 6.1 61 31 Tu 1 . - CDS 54862 - 56265 1636 ## COG0104 Adenylosuccinate synthase - Prom 56331 - 56390 5.6 - Term 56354 - 56386 2.5 62 32 Op 1 16/0.000 - CDS 56392 - 57759 1641 ## COG0305 Replicative DNA helicase - Prom 57948 - 58007 8.9 - Term 57983 - 58015 1.5 63 32 Op 2 9/0.000 - CDS 58032 - 58493 755 ## PROTEIN SUPPORTED gi|227518097|ref|ZP_03948146.1| 50S ribosomal protein L9 64 32 Op 3 . - CDS 58490 - 60466 785 ## PROTEIN SUPPORTED gi|162447066|ref|YP_001620198.1| bipartite protein: signaling protein and ribosomal protein L9 - Prom 60570 - 60629 3.7 - Term 60616 - 60653 7.3 65 33 Op 1 21/0.000 - CDS 60671 - 60910 397 ## PROTEIN SUPPORTED gi|29374670|ref|NP_813822.1| 30S ribosomal protein S18 66 33 Op 2 24/0.000 - CDS 60936 - 61502 676 ## COG0629 Single-stranded DNA-binding protein 67 33 Op 3 . - CDS 61547 - 61849 510 ## PROTEIN SUPPORTED gi|29374668|ref|NP_813820.1| 30S ribosomal protein S6 - Prom 61928 - 61987 7.9 - Term 61971 - 62023 15.3 68 34 Op 1 24/0.000 - CDS 62024 - 64525 3234 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 69 34 Op 2 9/0.000 - CDS 64581 - 66530 2415 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 70 34 Op 3 9/0.000 - CDS 66527 - 67654 1085 ## COG1195 Recombinational DNA repair ATPase (RecF pathway) 71 34 Op 4 6/0.143 - CDS 67641 - 67886 337 ## COG2501 Uncharacterized conserved protein - Prom 68030 - 68089 9.6 - Term 68258 - 68299 -0.8 72 35 Op 1 16/0.000 - CDS 68466 - 69596 1404 ## COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) - Prom 69720 - 69779 4.1 73 35 Op 2 . - CDS 69798 - 71141 1428 ## COG0593 ATPase involved in DNA replication initiation 74 35 Op 3 . - CDS 71153 - 71224 58 ## - Prom 71420 - 71479 7.3 + Prom 71556 - 71615 7.3 75 36 Tu 1 . + CDS 71664 - 71798 223 ## PROTEIN SUPPORTED gi|29377774|ref|NP_816928.1| 50S ribosomal protein L34 + Term 71837 - 71896 9.1 + Prom 71851 - 71910 4.4 76 37 Op 1 22/0.000 + CDS 71996 - 72358 347 ## COG0594 RNase P protein component 77 37 Op 2 16/0.000 + CDS 72358 - 73185 1019 ## COG0706 Preprotein translocase subunit YidC 78 37 Op 3 . + CDS 73200 - 73976 1110 ## COG1847 Predicted RNA-binding protein + Term 74176 - 74204 -0.9 + Prom 74219 - 74278 7.8 79 38 Tu 1 . + CDS 74343 - 75065 682 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Term 75071 - 75113 11.1 - Term 75050 - 75108 9.2 80 39 Tu 1 . - CDS 75109 - 75804 829 ## COG1802 Transcriptional regulators - Prom 75842 - 75901 8.2 - Term 75882 - 75926 4.8 81 40 Tu 1 . - CDS 75938 - 77335 1703 ## COG2851 H+/citrate symporter - Prom 77488 - 77547 7.5 + Prom 77651 - 77710 4.0 82 41 Op 1 . + CDS 77740 - 78102 430 ## EF3326 hypothetical protein 83 41 Op 2 9/0.000 + CDS 78086 - 78487 577 ## COG0511 Biotin carboxyl carrier protein 84 41 Op 3 . + CDS 78517 - 79632 1568 ## COG1883 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit 85 41 Op 4 . + CDS 79654 - 79788 252 ## EF3323 hypothetical protein 86 41 Op 5 5/0.143 + CDS 79803 - 80813 1030 ## COG3053 Citrate lyase synthetase 87 41 Op 6 6/0.143 + CDS 80819 - 81127 426 ## COG3052 Citrate lyase, gamma subunit 88 41 Op 7 6/0.143 + CDS 81115 - 82002 1187 ## COG2301 Citrate lyase beta subunit 89 41 Op 8 7/0.143 + CDS 82005 - 83537 1865 ## COG3051 Citrate lyase, alpha subunit 90 41 Op 9 1/0.143 + CDS 83518 - 84066 537 ## COG3697 Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) 91 41 Op 10 . + CDS 84059 - 85456 1766 ## COG5016 Pyruvate/oxaloacetate carboxyltransferase + Term 85493 - 85537 8.2 92 42 Op 1 . + CDS 85574 - 86746 1201 ## COG0281 Malic enzyme 93 42 Op 2 . + CDS 86753 - 87622 863 ## COG1767 Triphosphoribosyl-dephospho-CoA synthetase 94 42 Op 3 . + CDS 87607 - 87780 128 ## gi|307268895|ref|ZP_07550259.1| hypothetical protein HMPREF9498_01025 + Term 87819 - 87851 4.2 + Prom 87859 - 87918 10.3 95 43 Op 1 . + CDS 87989 - 88114 62 ## + Term 88143 - 88189 -0.5 + Prom 88224 - 88283 7.6 96 43 Op 2 3/0.143 + CDS 88411 - 89925 1630 ## COG1404 Subtilisin-like serine proteases + Prom 89927 - 89986 75.7 97 44 Op 1 . + CDS 90190 - 93237 3848 ## COG1404 Subtilisin-like serine proteases + Term 93259 - 93324 16.5 + Prom 93306 - 93365 6.9 98 44 Op 2 11/0.000 + CDS 93470 - 94867 1913 ## COG0486 Predicted GTPase 99 44 Op 3 . + CDS 94887 - 96785 2341 ## COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division + Term 96795 - 96856 18.0 + Prom 96828 - 96887 8.1 100 45 Op 1 . + CDS 96957 - 97757 971 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 101 45 Op 2 . + CDS 97773 - 99635 1422 ## COG3711 Transcriptional antiterminator 102 45 Op 3 . + CDS 99632 - 100117 548 ## EF3308 transcriptional regulator SrlR 103 45 Op 4 6/0.143 + CDS 100117 - 100671 613 ## COG3730 Phosphotransferase system sorbitol-specific component IIC 104 45 Op 5 6/0.143 + CDS 100688 - 101683 1263 ## COG3732 Phosphotransferase system sorbitol-specific component IIBC 105 45 Op 6 . + CDS 101708 - 102064 479 ## COG3731 Phosphotransferase system sorbitol-specific component IIA 106 45 Op 7 . + CDS 102092 - 102769 776 ## COG0176 Transaldolase + Term 102773 - 102822 12.1 + Prom 102870 - 102929 6.3 107 46 Tu 1 . + CDS 102971 - 104743 1665 ## COG4716 Myosin-crossreactive antigen + Term 104745 - 104790 9.4 + Prom 105070 - 105129 3.2 108 47 Tu 1 . + CDS 105154 - 106140 1007 ## EF3301 hypothetical protein + Term 106143 - 106187 12.1 - Term 106125 - 106179 16.2 109 48 Tu 1 . - CDS 106183 - 106278 80 ## - Prom 106498 - 106557 6.0 + Prom 106226 - 106285 4.7 110 49 Op 1 15/0.000 + CDS 106388 - 107104 894 ## COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division 111 49 Op 2 25/0.000 + CDS 107120 - 107881 992 ## COG1192 ATPases involved in chromosome partitioning 112 49 Op 3 1/0.143 + CDS 107874 - 108764 1126 ## COG1475 Predicted transcriptional regulators + Prom 108782 - 108841 6.0 113 50 Op 1 4/0.143 + CDS 108882 - 109067 229 ## COG4481 Uncharacterized protein conserved in bacteria 114 50 Op 2 . + CDS 109124 - 110239 1615 ## COG0012 Predicted GTPase, probable translation factor 115 51 Tu 1 . + CDS 110352 - 111041 848 ## COG4858 Uncharacterized membrane-bound protein conserved in bacteria + Term 111101 - 111130 -0.3 + Prom 111049 - 111108 2.9 116 52 Tu 1 . + CDS 111208 - 112890 1155 ## EF3294 hypothetical protein + Term 112920 - 112966 5.9 + Prom 112960 - 113019 8.6 117 53 Tu 1 . + CDS 113048 - 114529 2225 ## COG0516 IMP dehydrogenase/GMP reductase + Term 114560 - 114600 10.5 - Term 114687 - 114731 8.5 118 54 Tu 1 . - CDS 114741 - 116012 1707 ## COG0172 Seryl-tRNA synthetase - Prom 116038 - 116097 5.4 - Term 116063 - 116115 12.1 119 55 Op 1 40/0.000 - CDS 116347 - 117528 1177 ## COG0642 Signal transduction histidine kinase 120 55 Op 2 . - CDS 117518 - 118207 860 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 118243 - 118302 13.1 Predicted protein(s) >gi|307679191|gb|GL457056.1| GENE 1 69 - 182 147 37 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTRKDKLEQTKKLADLWYQQQKNKIYIAQQKERRGVA >gi|307679191|gb|GL457056.1| GENE 2 179 - 352 149 57 aa, chain - ## HITS:1 COG:no KEGG:EF2845 NR:ns ## KEGG: EF2845 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 57 21 77 79 61 73.0 9e-09 MRKIYNLRRIAVLLIVFGLGLIVGGNFNPIIQNVYIGLFIIWTLFYDLALEDREVKK >gi|307679191|gb|GL457056.1| GENE 3 364 - 549 285 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315143729|gb|EFT87745.1| ## NR: gi|315143729|gb|EFT87745.1| conserved domain protein [Enterococcus faecalis TX2141] # 1 61 1 61 61 74 95.0 3e-12 MAYTTEQESWILNQIKKERKQLQDDRAALRQSEQLTEGKAYQIERELEFLRYLEIQNRMH I >gi|307679191|gb|GL457056.1| GENE 4 560 - 1270 732 236 aa, chain - ## HITS:1 COG:PM1774 KEGG:ns NR:ns ## COG: PM1774 COG3646 # Protein_GI_number: 15603639 # Func_class: S Function unknown # Function: Uncharacterized phage-encoded protein # Organism: Pasteurella multocida # 5 136 29 152 239 72 38.0 8e-13 MTNLVIMKNQQAVTSSLQVAETFGKEHKVVLKAIDELKEGVAQNYADLFYEDTYIHPQNK QSYRQVIMNRDGFTLLAMGFTGQKALQFKLKYIEAFNQMEKEIQQPKLPTSQRELAMLAL SANEETNERVDVIEKEVADLKDNQKIGADDYGYLSRRVHQRVAEVARGFGKITKEQRGKL YKDINSGIKQITGVGTRSQLREKHYPMVIEYINDWEPSTATKTVVRQMSLDLNDIA >gi|307679191|gb|GL457056.1| GENE 5 1348 - 1560 247 70 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315143621|gb|EFT87637.1| ## NR: gi|315143621|gb|EFT87637.1| hypothetical protein HMPREF9495_02537 [Enterococcus faecalis TX2141] # 1 70 29 98 98 121 98.0 2e-26 MEQTNKRKNELAVDLVVAWLAHNSEISNEIGRTSVKGNPVTTKEVAQAYLDFFKTITNNE LPENLTNENQ >gi|307679191|gb|GL457056.1| GENE 6 1554 - 1724 240 56 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|255972575|ref|ZP_05423161.1| ## NR: gi|255972575|ref|ZP_05423161.1| predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis T3] predicted protein [Enterococcus faecalis T1] predicted protein [Enterococcus faecalis T3] conserved hypothetical protein [Enterococcus faecalis TX2141] # 1 56 1 56 56 66 100.0 6e-10 MNKNNVKQDLTTQEIAKLIMEIKLGILQQLEKALDQAIKEKNSTMVAAIAEILKSY >gi|307679191|gb|GL457056.1| GENE 7 1782 - 1943 212 53 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315143623|gb|EFT87639.1| ## NR: gi|315143623|gb|EFT87639.1| hypothetical protein HMPREF9495_02539 [Enterococcus faecalis TX2141] # 1 53 1 53 53 72 100.0 1e-11 MNQKSSEKVDIDLLAQAFADVLTRRTGIQHVCKIKSKSESKKSEGNNYQKEAN >gi|307679191|gb|GL457056.1| GENE 8 1981 - 2187 275 68 aa, chain - ## HITS:1 COG:SPy0658 KEGG:ns NR:ns ## COG: SPy0658 COG1396 # Protein_GI_number: 15674726 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 68 1 69 76 72 55.0 1e-13 MEFELNRLKAERIAKGYSQEELAKKLGWTRSMYTKRENGAVSLGVDELAKIATALEMPES RISIFFNR >gi|307679191|gb|GL457056.1| GENE 9 2342 - 3049 619 235 aa, chain + ## HITS:1 COG:L53427 KEGG:ns NR:ns ## COG: L53427 COG1396 # Protein_GI_number: 15673412 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 1 106 1 113 173 78 42.0 1e-14 MRTNDEIMTLITDLRKQKKMTSTELAEKVGIAKSAMSRYENRTRQFPVNKISDFAKALET SPEYLLGFEEEPLSQILTKINETSAKLETKRQKNVLIFAEKELDKQNFETESRNRKVVPL VGKTAANPAVLEYGDIDVEQHSFAHVPEGADCAINIQGDSMEPLIKDGSIVFYKKQCDVE NGEIAIVEIDNDGVTCKKVIKDYSNKQIILRSINTKYEDRILENEKIRIIGKVIL >gi|307679191|gb|GL457056.1| GENE 10 3012 - 3083 109 23 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKLELLEKLYYRTFVLDLKVFY >gi|307679191|gb|GL457056.1| GENE 11 3214 - 3396 304 60 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315143626|gb|EFT87642.1| ## NR: gi|315143626|gb|EFT87642.1| conserved hypothetical protein [Enterococcus faecalis TX2141] # 1 60 1 60 60 86 100.0 6e-16 MNKYEVEKRLCEELNIEYINLSLRTGPSHRFTEKEYQELKSDYAQLFLQLNKLNVEKDQE >gi|307679191|gb|GL457056.1| GENE 12 3425 - 4774 754 449 aa, chain + ## HITS:1 COG:lin1231 KEGG:ns NR:ns ## COG: lin1231 COG1961 # Protein_GI_number: 16800300 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Listeria innocua # 6 381 4 390 471 136 31.0 9e-32 MLKRAALYIRVSTDQQAKHGDSLDAQIATLKDYVSTQDNLTIIDTYIDDGISGQKLYRDE FQRLLEDIKKNRIDIILFTKLDRWFRNLRHYLNIQEILDNSGVTWLAVSQPFFNTDTAYG RSFVNQSMSFAELEAQMASERIKAVFENKIRKGEVVTGSVPFGYKICDKKLIPNENAPIA KDIFKHYSIHNSIRLTVEYLFNEYDITRSSRTIKHMLRNRKYIGEVSGNKNYCPPIVDKE TFEKVQNLLDKNISSIAKRTYIFSGLVVCSCCGKKMTGRYRKRKYIKKDGTVMYYTKKVY RCNGNTYKRNKCPNKINIAEEILEEYLLNNIKADAENFEAKQKKIAVSAPEKNNNSKILK KIERLKKAYLNEVISLDEYKKDRKELEQMMIQVKPKETIVFKSNWFNKNIESTYRDFDEE EKRFVWRSVLKNLIVDPHSKITINFLTKN >gi|307679191|gb|GL457056.1| GENE 13 4771 - 4878 62 35 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKLSFKKVKWGMHFLMAVALIAPSVTSRTVPKSG >gi|307679191|gb|GL457056.1| GENE 14 5321 - 6697 1906 458 aa, chain - ## HITS:1 COG:lin0237 KEGG:ns NR:ns ## COG: lin0237 COG1207 # Protein_GI_number: 16799314 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) # Organism: Listeria innocua # 1 457 1 457 457 542 59.0 1e-154 MENRYAIILAAGKGTRMKSKLYKVLHPVAGKPMVEHILDQVEQTEPTEIVTIVGHGAEMI KSHLGERSQYALQAEQLGTGHAVMQAQELLGGKQGTTLVITGDTPLLTAETLKNLFDYHQ GKNASATILTAHAEDPTGYGRIIRDHVGIVERIVEQKDASEEEARVQEINTGTFCFDNES LFEALAKTDTNNTQGEYYLTDIIEILKKEGKAVAAYQMADFDEAMGVNDRVALSTANKIM HRRLNEMHMRNGVTFIDPDTTYIDEGVVIGSDTVIEAGVTIKGKTVIGEDCLIGAHSEIV DSHIGNQVVVKQSVIEESVVREGADVGPYAHLRPKADVGANVHIGNFVEVKNATIDEGTK VGHLTYVGDATLGKDINVGCGVVFVNYDGKNKHQTVVGDHAFIGSATNIVAPVTIGDHAV TAAGSTITEDVPSEDLAIARARQVNKEGYAKKLPYMKD >gi|307679191|gb|GL457056.1| GENE 15 6908 - 7729 1041 273 aa, chain - ## HITS:1 COG:lin0231 KEGG:ns NR:ns ## COG: lin0231 COG0503 # Protein_GI_number: 16799308 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Listeria innocua # 1 270 1 270 272 354 65.0 8e-98 MKIRRSERLIDMTQYLLDHPHTLVSLTYFADRYQSAKSSISEDLAIVKKTFKERGTGILE TIPGAAGGVRFIPEIPYEEAEQLIMDLCDRLSEQDRLLPGGYVYLSDLLGEPNLLRQVGR IIASKYLGKQIDAVMTVATKGVPIAQAVSYYLNVPFVIVRRDSKITEGSTVSVNYVSGSS ERIEKMELSKRSLKRGSKVLVVDDFMKGGGTVNGMKSMIEEFEAELVGITVFAESKFNGR RAIDDYTSLLYVEDVDTQTKTISVVPGNYFTEK >gi|307679191|gb|GL457056.1| GENE 16 7873 - 8712 955 279 aa, chain - ## HITS:1 COG:L165709 KEGG:ns NR:ns ## COG: L165709 COG1108 # Protein_GI_number: 15674095 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Lactococcus lactis # 1 267 1 267 269 242 59.0 5e-64 MAEMLSYAFMQKAFLAALFISVIAPMLGVFLVIRRQSLMADTLSHVSLAGVALGFFFNWN PNLMTLIVVIVAAIILEYLRMIYSTYSEISIAILMSGGLALALVLMNLTGGNSAASIQSY LFGSIVTITWDQVVMLAILFVVLVLLFMLFKRPMYVLTFDEDTAHVDGLPIHWMSMLFNV ITGVAIAVMIPIAGALLISAIMVLPAAIGMRIGKGFNTVIIISVFMGLIGMLTGLTSSYY LETPPSASITLIFIGLFLLVNIYRRVVVMVQRKQKMQRN >gi|307679191|gb|GL457056.1| GENE 17 8874 - 9566 233 230 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 12 229 14 232 311 94 32 2e-18 MHYIEVENLTFYYDDEPVLEDVSYYVDPGEFVILTGENGAAKSTLIKSTLGLLKPTSGKI TVAKKNSAGEKISIGYIPQQVASFNAGFPSTVIELVRSGRFPRNRWFKPLTKKDHLHVEK ALKSVDMWEMRHKRIGELSGGQKQRISLARVFATDPDLFILDEPTTGMDEQSRNEFYQLL QHSAHEHGKAILMITHDHEDIKTYVDRQIRLVRKEDSKWRCFHMSEESYT >gi|307679191|gb|GL457056.1| GENE 18 9592 - 10545 1048 317 aa, chain - ## HITS:1 COG:lin0191 KEGG:ns NR:ns ## COG: lin0191 COG0803 # Protein_GI_number: 16799268 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Listeria innocua # 12 316 9 311 312 301 55.0 1e-81 MTKIYRRLIIGVTLAISAFLLASCGQTTQSPKEKKELTVMTTFYPMYDFAKQVVGDEGEV ELLIPAGTEPHDYEPSAKDLAKITDADVFVYNSKELETWVPNVIENLDTKKVSIVEASQS IQLMQGTEEEESGEEGHEGHNHSHELDPHVWLDPVLAQKEVTAIRDALIKKYPEKKAVFE KNTAAYLEKLTALDKEYQAAFAGAKNRTFVTQHAAFGYLAKQYGLTQEPIAGISPDQEPS PSRLAELKKYIKTNNVSVIYFEASASTKVAKTLADETGVELAVLNPLESLTQKEQEAGEN YVSVMKENLAALQKSIH >gi|307679191|gb|GL457056.1| GENE 19 10711 - 11562 691 283 aa, chain - ## HITS:1 COG:lin0229 KEGG:ns NR:ns ## COG: lin0229 COG1947 # Protein_GI_number: 16799306 # Func_class: I Lipid transport and metabolism # Function: 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase # Organism: Listeria innocua # 1 280 1 280 291 335 59.0 7e-92 MEIIERAPAKINLGLDVLHKRVDGYHEVESIFASVDLADHLTFENLEEDIIRIETDSSFL PVDRRNHVYQAVDLLKRTYNIHKGIKIYIEKRIPVAAGLAGGSSDCAAALRGLNKLWNLG LTMDELCEIGSQIGMDVPYCLRGGTAFANGRGEKIEALPTMPQCWIVLVKPRISVSTSTV FNDLAVDELHHPDIAGLRIAIENGDYTGMTQTVGNALESVTIARHPIVQQIKDRMLKYGA DAALMSGSGPTVFALCEKKTRAQRIYNGLKGFCEEVYLVRTLK >gi|307679191|gb|GL457056.1| GENE 20 11743 - 11988 337 81 aa, chain - ## HITS:1 COG:lin0228 KEGG:ns NR:ns ## COG: lin0228 COG4466 # Protein_GI_number: 16799305 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 76 1 76 85 93 60.0 1e-19 MPTTLSSIKKDLEGRIGSEIMLVAQTGRKRQTERKGILTETYPSVFVVDLDPDENSFERV SYSYSDVLTRTVEIEFIGQAV >gi|307679191|gb|GL457056.1| GENE 21 12103 - 12669 776 188 aa, chain - ## HITS:1 COG:lin0275 KEGG:ns NR:ns ## COG: lin0275 COG1595 # Protein_GI_number: 16799352 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Listeria innocua # 2 186 10 201 201 59 26.0 4e-09 MLEQIQQALAGDQEQFQALYGQYQPVIYKCMKKYYLKDYDTEDWLQEGRIVFFRTLERFD SEKQASLGKFFKRNFENHVHSLIRHQCAYKRRTDTLSISLEQRLESAGEELVDYLGTAAT DPLGQLMIQEKLAAFPTRLSSLEQQILNAYLKGYTLEEIAKVRGGTFSAVRSAYDRAKAK MKYTLENE >gi|307679191|gb|GL457056.1| GENE 22 12755 - 13285 546 176 aa, chain - ## HITS:1 COG:SPy1937 KEGG:ns NR:ns ## COG: SPy1937 COG3688 # Protein_GI_number: 15675740 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein containing a PIN domain # Organism: Streptococcus pyogenes M1 GAS # 1 173 1 172 172 149 47.0 3e-36 MKKQLLIVDGYNMIGAWPELVQLKKQERLEDARELLLSRLSNYAKYEGLEIIVVFDAQLV PGIQQTYKKYLLTVVFTKEDETADSYIERLAGEKNDRLTQVTVATSDLAEQWVVFSQGAL RTSANELYKAVQKTEKTIAIHATDIHFQQFRRNSPWNVEQLSKLSEKLEELSQKKD >gi|307679191|gb|GL457056.1| GENE 23 13300 - 14157 570 285 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 45 285 7 249 255 224 46 2e-57 MKNEKSRPFKKGKKRPERSDKRSKERNPRPATAGADGTSEELADNFVFGFHATVEALQQG RGNKLFLQEDARGEKIEQLKQAAKEQAVPVKWVPKAKLDTMSDHGVHQGMVLAITAYQYL TLEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVT KASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSGTDYRRWNTQGAIALIIGNEGR GMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYRGRNPL >gi|307679191|gb|GL457056.1| GENE 24 14147 - 14545 345 132 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 [Bacillus selenitireducens MLS10] # 5 123 11 129 141 137 55 2e-31 MRDYKQLNGLALAYVGDAIYEIYIRDYLVSLGQTKPNVLHRMATHYVSAKAQASLMQAML AGEMLTEEEEVMYKRGRNAKSHTFAKNADVTTYRVATGFESLMGYLHLTQQKERLEELIN WCIKKVGETNEK >gi|307679191|gb|GL457056.1| GENE 25 14542 - 15954 1642 470 aa, chain - ## HITS:1 COG:BS_cysS KEGG:ns NR:ns ## COG: BS_cysS COG0215 # Protein_GI_number: 16077162 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Cysteinyl-tRNA synthetase # Organism: Bacillus subtilis # 2 470 3 466 466 564 58.0 1e-160 MIKIYNTLTREKEVFTPIEAHKVRMYVCGPTVYNYIHIGNARSAIAFDTIRRYFEYRGYE VNYVSNFTDVDDKIIKAAKELKITAPEVAERFIKAFEEDTQALNVQPATLHPRVMDHMPD ILAFIDVLIEKGFAYEVAGDVYYRTRKFPNYGKLSHQSIDELEVGASQRTGVEQQLKEDP LDFALWKSAKEDEISWDSPWGKGRPGWHIECSVMATKHLGETIDIHGGGQDLEFPHHENE IAQSEAKTGHTFANYWMHNGYVTIGEDDEKMSKSLGNFITVHEMIQKVDPQILRFFMSTT QYRRPIRYSESTLKEAAANYQKLKNAFENLRFRQADAVASLPEDEHYLAQLNELEQRFIT EMDDDFNAANGITVVYELAKMMNQYSEQATVSEPILVAMDKLFSGWLAIFGLFFKNEELV DAQVDALIEERNQARKDRDFARSDEIRDLLKEQGIVLEDTPQGTRWRRSE >gi|307679191|gb|GL457056.1| GENE 26 15947 - 16486 616 179 aa, chain - ## HITS:1 COG:SPy1944 KEGG:ns NR:ns ## COG: SPy1944 COG1045 # Protein_GI_number: 15675746 # Func_class: E Amino acid transport and metabolism # Function: Serine acetyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 173 1 173 193 234 65.0 5e-62 MSWLKRSVAAVKRNDPAARTTLEVLLTYPGLHALFWHRLSHFLYRHQLFLLAKIHAQFWR FITGVEIHPGATIGEGVFIDHGMGIVIGETAEIEEDVVLFHGVTLGGTGRDTGKRHPTVK KGAMISARAQILGPVVIGERSKIGAGAVVISDIPADATAVGVPAKVVRLNGRKVEKGHD >gi|307679191|gb|GL457056.1| GENE 27 16646 - 16723 57 25 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDFRDAVGGENSEHLLSKCIYEWLW >gi|307679191|gb|GL457056.1| GENE 28 16756 - 18213 1928 485 aa, chain - ## HITS:1 COG:lin0269 KEGG:ns NR:ns ## COG: lin0269 COG0008 # Protein_GI_number: 16799346 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Listeria innocua # 3 485 6 488 491 635 65.0 0 MTKVRVRYAPSPTGHLHIGNARTALFNYLFARHNDGEFIIRIEDTDQKRNIEDGEKSQLE NLAWLGMEWDESPAHPGEYGPYRQSERKEIYQPLIDQLLSSNRAYKCYCTPEELEAEREA QQARGEMPHYAGTCANLTPSEQAAKEAAGLEPVIRFRVPRNTEYKFDDIVKGEITFESDN IGGDFVIQKRDGMPTYNFAVAVDDHLMKISHVLRGDDHIANTPKQLMIYEAFEWTPPVFG HMTLIINSETGKKLSKRDETILQFIEQYRELGYLPEAMFNFIALLGWSPVGEEEIFSQED LIKLFDEQRLSKSPAAFDAKKLEWINNQYMKQMDLSELTDMCLPYLVADGRVEENPSPEK IEWLKQLVSLYQPQMSYAAEIVELSNLFFNEHPVLDDAAKEFLQGETVPTVLHAFKEQLE ALDVFDVPSIKAAIKAVQKETGVKGKNLFMPIRIAVSGQMHGPELGETIELLGKEKALDH LNKVL >gi|307679191|gb|GL457056.1| GENE 29 18266 - 18739 496 157 aa, chain - ## HITS:1 COG:BS_yacN KEGG:ns NR:ns ## COG: BS_yacN COG0245 # Protein_GI_number: 16077159 # Func_class: I Lipid transport and metabolism # Function: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase # Organism: Bacillus subtilis # 1 157 1 157 158 196 60.0 1e-50 MIRIGQGFDVHQLVPQRPLIIGGVTLPYEKGLLGHSDADVLTHAIIDAILGAAGLGDIGQ LFPETDPQFKNANSVNLLKKVNEKVGRSGFTIGNIDCTILAEEPKMSPYLAEMKKNLAAS CHLAVTQVNIKATTMEAMGFVGKKEGIGAIAVALLEK >gi|307679191|gb|GL457056.1| GENE 30 18758 - 19903 1424 381 aa, chain - ## HITS:1 COG:lin0266 KEGG:ns NR:ns ## COG: lin0266 COG4956 # Protein_GI_number: 16799343 # Func_class: R General function prediction only # Function: Integral membrane protein (PIN domain superfamily) # Organism: Listeria innocua # 5 362 5 357 357 375 54.0 1e-104 MQKRIITLLMIIAGASLGISLFPMAWEMAKQGNNSWLNNNFTNGLIGAIIFFILSLGLAK YIVSAVKKIEAALNEMSLTYLLFGSIGAIIGLTIGVIISIPMYNLQIPVVNSLLPILVMI ILGYLGFRMGTTRIEEWKKVFTPRQKKANTEDTEGQMLERKVEDNFHKYKILDTSVIIDG RIYDIAKTGFLEGVLLIPNFVLYELQYIADSGDSLKRVRGRRGLDILNALQKEEGISVEM YDGDFEDISEVDSKLIKLAKLLDGVVVTNDYNLNKVSEFQNVPVLNINALANAVKPVVIP GETMNVMVVKAGTERQQGVAYLDDGTMVVVEDGQHYMNEQIEVVVTSALQTAAGRMIFAK PAHAGRGINDRKDNHPKNDKN >gi|307679191|gb|GL457056.1| GENE 31 20007 - 21377 1432 456 aa, chain - ## HITS:1 COG:SPy0236 KEGG:ns NR:ns ## COG: SPy0236 COG1066 # Protein_GI_number: 15674421 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent serine protease # Organism: Streptococcus pyogenes M1 GAS # 1 455 1 452 453 633 73.0 0 MAKKAKVQFECQSCGYVSPKYLGRCPNCGQWNSMVEEVIQDTSDRRARVSLTGKKTQPQR LSEVVPKKEPRVKTELVELNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSQQLAATGGT VLYVSGEESAEQIKLRAERLGTVNETFYLYAETDMHEISRAIEKLEPDYVIIDSIQTMTQ PDVTSVAGSVSQVRETTAELLKLAKTNGIAIFIVGHVTKEGSIAGPRMLEHMVDTVLYFE GDKHHTFRILRAVKNRFGSTNEIGIFEMQTHGLVEVMNPSQVFLEERLEGATGSSIVVAM EGSRPILVEIQALVTPTMFGNAKRTTTGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAG GVKINEPAIDLALAISIASSYKEKGTSSSECFIGEIGLTGEIRRVNSIEQRVREAQKLGF TKVYVPKNNLGGWEAPEGIEIIGVSTIGETLRKVFK >gi|307679191|gb|GL457056.1| GENE 32 21456 - 21935 517 159 aa, chain - ## HITS:1 COG:L181168 KEGG:ns NR:ns ## COG: L181168 COG0756 # Protein_GI_number: 15672158 # Func_class: F Nucleotide transport and metabolism # Function: dUTPase # Organism: Lactococcus lactis # 1 157 1 149 150 155 53.0 2e-38 MKQRGFEIISKYQEEGLSVPQRATKGAAGYDFQAAETVVVPSLWKLQQAGENPKPILVKT GIKAYMPDSEYLELVSRSSNPLKRFLLLANGVGVIDSDYYNNENNEGHIMFQFLNFGYED VVIEKGERIGQGIFKPFLLADDDQVEAERTGGFGSSGQK >gi|307679191|gb|GL457056.1| GENE 33 22261 - 23076 949 271 aa, chain + ## HITS:1 COG:lin1228 KEGG:ns NR:ns ## COG: lin1228 COG0263 # Protein_GI_number: 16800297 # Func_class: E Amino acid transport and metabolism # Function: Glutamate 5-kinase # Organism: Listeria innocua # 1 269 1 269 276 334 63.0 1e-91 MRNKLQQAKRIVIKVGTSSLIYPNGNINLKAIDQLAFTLSDLSNQGKEIILVSSGAIGVG LNKLNLSVRPTTIPEQQAVAAVGQAELMNIYNQRFSTYSQQMAQVLLTRDVIEYPESRNN VTNTFEQLLKMNIIPIVNENDTVAIEELDHLTKFGDNDQLSAIVCQIVQADLLVMLSDID GFFSDNPTVNKEATLFSEINEINEDLFQLAGGKGSRFGTGGMSSKLKAAERVLANQQAMI LANGKQPKIIFEILEGKDIGTLFIKGGHESD >gi|307679191|gb|GL457056.1| GENE 34 23069 - 24316 1277 415 aa, chain + ## HITS:1 COG:lin1227 KEGG:ns NR:ns ## COG: lin1227 COG0014 # Protein_GI_number: 16800296 # Func_class: E Amino acid transport and metabolism # Function: Gamma-glutamyl phosphate reductase # Organism: Listeria innocua # 1 415 1 415 415 529 65.0 1e-150 MTDLKQLGQQAKEASYTLGLMDTRQKNTLLNKMAAAIEANAPRILQANALDLEQAATHGI SETMQDRLRLTEERITAMAEGIRQVATLPDPIGEVDKMWRNEAGLLIGQQRVPLGVIGII YESRPNVTTDAASLCFKSGNAVILRGGKEAFHSNQILVTILQEALIQEAVSPHLIQFVDD TSRETAQQLMRLNDYLDVLIPRGGANLIKTVLTTATVPVIETGTGNCHIYVDKDAQLTMA TEIIVNAKCQRPSVCNAAETLLIHQEVAEAFLPTIEKALKEFHVELRADERALAIFEEAI PATEQDWETEFLDFILAVKVVDSLDEAIQHINRYNTKHSESIISDNYFATQQFLQQVDAA AVYANASTRFTDGFEFGFGAEIGISTQKLHARGPMGLAELTSTKYVIYGNGQARS >gi|307679191|gb|GL457056.1| GENE 35 24408 - 25364 735 318 aa, chain - ## HITS:1 COG:lin0383 KEGG:ns NR:ns ## COG: lin0383 COG2378 # Protein_GI_number: 16799460 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Listeria innocua # 8 316 1 310 315 145 27.0 1e-34 MTPMEGKMKKSERLNQELFFLRTHPQFNLNQLMKTFGISKSTALRDIEALENLGVPLYVE NGRYGGYRVLNKPLLPPIYFNENEVLAIFFSLQLLKLVAESPFGHSYQQIQQKLLHSLDE PTQFKISQMSKVVYYEGIEQVEAPGNLEQLFHCILAQQVIQFNYTRYEATTKKILPTRLT ILEGYWYCSGYDVTKKAWRTYRCDFMEAIQQLNQTLDFTTEELKESYRHQQTTARTIPFK AIITEKGKEFFYKHRFDNIQLEETPTQCFLVGQIHPTETQFLANYFMGFGEEVTILEPVQ VKQAYVESIMRIQKKYQE >gi|307679191|gb|GL457056.1| GENE 36 25420 - 25887 609 155 aa, chain + ## HITS:1 COG:no KEGG:EF0035 NR:ns ## KEGG: EF0035 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 154 1 154 155 285 98.0 5e-76 MKNTQFALFMVLNGRATEALTFYQEAFAGDILFKITNQEFKERLNPSLTIPAGEEHWLSH SILQMDTFQLQLADNPLFAGMNTTPTEQLTLSLTVNSRHSAKTIFEKLTRHPESCIIQEP IENEFATFYAIVKDPFGLVTQITQEKQADPTKKGR >gi|307679191|gb|GL457056.1| GENE 37 25895 - 26404 509 169 aa, chain + ## HITS:1 COG:YDR540c KEGG:ns NR:ns ## COG: YDR540c COG4283 # Protein_GI_number: 6320749 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Saccharomyces cerevisiae # 1 167 1 167 179 174 56.0 5e-44 MRTYESKEALIEAIQIASQKYLAEFAEIPETLKDHRIETVAKTPSENLAYQLGWLNLLLS WEEQEQRGLTVQTPAEGYKWNQLGALYQSFYQTYGQMSLESQLIALQDILEKLLHWIDSL SEDELFLPQQRAWATTKAQWPLWKWIHVNSVAPFTSFRTQIRKWKKVCL >gi|307679191|gb|GL457056.1| GENE 38 26948 - 29563 2241 871 aa, chain + ## HITS:1 COG:SP2231 KEGG:ns NR:ns ## COG: SP2231 COG4485 # Protein_GI_number: 15902035 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 6 844 2 829 850 527 39.0 1e-149 MKNKSRQFLKNNWPYMLASFFIPFLIMAIIYLSIGIYPGSSRSVLASDAFSQFSNFHASF NNVLHGKQSLFYTWNASLGLNYLSLISYYLGGLFTPLVFFFNNQNMPDALYFLTLLKIGS AGLSFWFLAKQTFKIPKWSHVTLSVSYALMSFIVAHSELIMWLDAFIYLPLVILGIHRLM DQRKPTLLFVSYFLLFITNYYFGFMIGLFSFLYYFARTFTDWQRYKSRIVAYFTTSLLAG GASMIMVLPAVLDLRTNGETLSEITTFKTEATAFLDIIMKNMIGVYDTTKYGSIPFIYIG LLPLIFCLFYFVTKEVPLKNKLLFGSLFVLLIASFYIMPLNLFWHGMHAPNMFLFRYSFL FSFLVILLAGYGWEKFEKDDLGVLSGLILILLAIFALAMGTKGATSYTYVTLTSFVLTAT FLLLYFFGIAFYQLKKAPMQYLVILLLLLVSGEAIINTRAMVTGILNDWNYASRSLYSEP YPDLKNLVDQTKKENDTFYRLENLNGVSANDGINYGYSGISMFSSVRNRHSSTYLNALGF RSRGTNLNIRYQNNTLLMDALMGIKYNIAENNPMKFGFERQAAAGKYQLYRNENALPLGF LADKEIYNVRQPLNDNLGSQTNLLNALANTNERYFTFYQPTMTLQNNVTITQNTAGVTFT EKQHNVAKEISYTVNVPANTQAYLSLFPTDFAQLESSTATVTVNGSSQQSQIGITGQYYN LGYYPKDTTVNFKVSFYGTKAVSFVQPQVVGLNTNAFEKAISAVQEKGVDLTTGKRSASG TFTADKDQVLVTTIPYDKGWRVKIDGKKVTPKAFKDAFLSVPVSAGTHTIQFSYLPEGLI PGIVLFVLCTGGFVAYVTLIPARRNRKKEDK >gi|307679191|gb|GL457056.1| GENE 39 29832 - 30338 104 168 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|312901266|ref|ZP_07760549.1| ## NR: gi|312901266|ref|ZP_07760549.1| hypothetical protein HMPREF9510_02059 [Enterococcus faecalis TX0470] hypothetical protein HMPREF9510_02059 [Enterococcus faecalis TX0470] hypothetical protein HMPREF9495_02569 [Enterococcus faecalis TX2141] ABC superfamily ATP binding cassette transporter permease subunit [Enterococcus faecalis OG1RF] # 1 168 4 171 171 201 99.0 1e-50 MKTKKWNWSILAFFIPYLVSNIFLFFTLTEKDNKLLKMIEESSKLLNISNGEFNFFMIVI VIIANLCIFFVTFIILKIVLLIFGFKKNYNQDIFISLLLSVSVVNLLVLFISEIVTIDRL PLSISTSSIEVIIFLLLFYSNTKDVKATKLLFFGKLWLLLFNIVSLVV >gi|307679191|gb|GL457056.1| GENE 40 30889 - 33480 2197 863 aa, chain - ## HITS:1 COG:lin1803_2 KEGG:ns NR:ns ## COG: lin1803_2 COG2898 # Protein_GI_number: 16800871 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 257 849 1 590 613 414 38.0 1e-115 MKKNISQLAQWLKEHSLLLKLIFLGSVLVFVANQVTHIAQGMTWADIFSTMEQQSTGRLI GMVLAGLLGVIPMLLYDYVVVKLLEKEGKPPMKRMDWLTSAWVTNTINNLAGFGGVVGAT LRINFYGKDVPRGKVVATVSKVALFLISGLSILSFVAFVDLFFIRTQNVFREYWVWLLLG SLIAPALWFFTYLKRRTLFKTFFPKAVLLLFGASLGQWLGGMFAFLMIGRLMQVPVSMVS VYPMFVIATLIGMLTMVPGGMGTFDVLMILGLSQLGIDRSQAVVWLLYYRLFYYVTPFMT GVILFLQQAGMKVNQFFDNLPRLFSQKVAHFILVAALYFAGIMMVLLSTVTNLSNVSRLF QVLLPFSFNFLDQTLNLFVGFLLLGLARGISMKVKKAYWLTIILLGFCIVNTVARTTSWQ LIAVYAVILLAVILARKEFYREKFVYSWGALTVDSILFGCLFIGYAVAGYYAARPAGGNQ VINHFLLFPSDDVWFNGLIGLSISLIGLFFLYQYLAETTVTLGEGFEEARLTRFLEKFGG NEGSQFLYLKDYGHFYYQEEGEDQVLFGFQMKFNKCFVLADPIGQREKWTAATLAFMDQA DLLGYQLVFYRISEEYVMTLHDCGFEFMKVGEEGLIQFDEPSTVNQTAWTETVTEKIAAD AADFQFEFYPETISDALYQELERVSADWSRNQKERYFIGGRLDPEYLKCSSVGLVRQKQT VIGFITGKEMEKGKSISYDLLRIRSEAPAFTREYLFTHFIETYQQQGYQLIDIGMAPLAN VGESKYSFLKERFVNIFYKYSYQIYAFQDTRKRKEQYVTSWQPRYFAYPKRTSVLFAFVQ LSLLITKGRHQSVSLVEEAMTEI >gi|307679191|gb|GL457056.1| GENE 41 33664 - 34938 1524 424 aa, chain - ## HITS:1 COG:YPO0166 KEGG:ns NR:ns ## COG: YPO0166 COG1486 # Protein_GI_number: 16120509 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases # Organism: Yersinia pestis # 2 414 3 431 437 306 41.0 7e-83 MSLKIAIIGAGSVYTPEIIEGLAQSKEKLPVTELTLMDINPDRLEIMYNFLNRYKKFHQL SFAIRKTENLEEAVKGQDFILTQIRVGGNQARIHDEKIPLKYDVIGQETTGPGGYMKALR TIPAIVEIAKAVEKHNPEAWLINYANPTGILAEAVRNYTKTKFIALCAGGMRPRTWVGWA LDANYKEVTYDFVGLNHMNFAYNIRVDGRKITKEEFDKVADIHETVAPELIKKLNALPSL YCQYYFHRRQKLAELKEAPLTRGETVLGLEKEIYTALKNPSQHDKPEILKNRGGGYSELA LEALSAIYNDEDMWIVANVKNERAIEFLPYDTSVETPCILNKNGITPLVQNNIPEGVYGL VSAVKNYESLVVQAAVEGNYDKALEAMVAHPLVGDFDIAKPMLDEMLKVNAPYIHPDLVA AVTD >gi|307679191|gb|GL457056.1| GENE 42 34953 - 35969 829 338 aa, chain - ## HITS:1 COG:STM0573 KEGG:ns NR:ns ## COG: STM0573 COG0449 # Protein_GI_number: 16763950 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Salmonella typhimurium LT2 # 29 259 28 263 347 94 28.0 3e-19 MNQMNQFINSQWQLLPTLLQNTITMPFEEESPKQIIFVGSGSSLNAAKMAQRYFETFSQQ SLLFFNVQQYKKQGALLDPHYLVAISQTGNSLATLECLHLASENKNTTIFLSATRDEEKR QYADYFIDLCCAEEQIGPKTVGFTATFIRLVQLALAFNKDQEDRISEEIFVSFKECIQKM PKMKEITLQWLKENPHWANAPYLTITADDALLGVIEEGALKVLETLRIPVMAYEIGEFTH GPHRLIKEGSYHIFLSGGPTTELTERVNLYTQSFTKNTLLITEKAGEITVDLSCETPGVE LLYTLIFQVLANEWALQTGFNPDKKVHEAFFAFVGTKD >gi|307679191|gb|GL457056.1| GENE 43 35944 - 37245 1122 433 aa, chain - ## HITS:1 COG:VC1282 KEGG:ns NR:ns ## COG: VC1282 COG1455 # Protein_GI_number: 15641295 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Vibrio cholerae # 2 407 8 425 446 254 37.0 2e-67 MEKIVQFVNEKISPPLMKVGENRYMIAVKNGMILTVPFTIIGSIFMILAQFPLTSYQNFI EPYKNVLMVPTSVTFGIIGLIAVVGISYSLSQFYKIDTIRNVLMSLVCYLLVQSSMGEDG SYSINTGNFGTLGVFSAIIISFVVVEIYRFCMNKQLAIKMPSSVPPAIAKSFNILIPLLI SLTVFWVIRVLLGFDINASLNMLFSPLVQGLSTLPGILVFMLLRSLLWCVGIHGGAVLSV ADPIFLTMLGANTDALAAGEPLPYITAAGFVNFIFIGGGGATLMLVIFMIFSKDQGLRTL GKLSLPASIFEINEPIVFGVPMVLNPVLMIPYTLCNTLLALIAYLLMYFDVIGRPVVAVP WTTPPILMQYLTSGGDWRAAVYGVFALLVSGAIYYPFFKMLEKQRLDITIQETAENEENL EGETVRESNESVY >gi|307679191|gb|GL457056.1| GENE 44 37299 - 39080 1109 593 aa, chain - ## HITS:1 COG:SP0306 KEGG:ns NR:ns ## COG: SP0306 COG3711 # Protein_GI_number: 15900239 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Streptococcus pneumoniae TIGR4 # 1 383 3 403 493 73 24.0 2e-12 MLTFNEQRLLEQLLKEEEFQTFDALASHLGLSVRTVRNLLNKLEPTFQQNHLRLSKKYGV GIKLISEKQSFREISENIHTSIVVRREVLKLMLLFYYRKKVSINQLSQVFFLTKSSVLAD LKIVEKELAVYNLKIVRSHQGTELLGHRKDIKSAIIDSVHLVGTAFIFENRAYLSKNQFY CQKILVSEFKNVILSGIRLISIKYSYSFNEDFIQTLVIQLMVDILLFGKQMNEKQSKDGS DPATDFQLYLEQTLGFTFSNQYNPNRIGEYLAACEYRKPQKSSPLHEIAKQVLTSYQDLQ QVRMDTSNLIDKIADNIGQIKQRNHYRMSVFHPLLNDLQLNFGKEFIALRFCFLAIEKRV GYVSDDELCFLLVTILNTPQRYKPQLTARLASNGSSEYRQFIKRELQRNLSDVQVFLNEE VSIADWQFIFSKNKQLKKLADDNIKFDVFNKSHLAIVKNETALYKRFKVERGCSIPSIFE TISMSNKLSKAKVVEKITERLIEEEVTDFATIEDAFNRDQHQPLIWRKMECAILFMIDPR QLQSQIREFSWSALINWCENNQNNQVRKVVIIVAGKIEEIDFYEIFRRFVSNG >gi|307679191|gb|GL457056.1| GENE 45 39248 - 39628 466 126 aa, chain - ## HITS:1 COG:SP1567 KEGG:ns NR:ns ## COG: SP1567 COG0251 # Protein_GI_number: 15901410 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Streptococcus pneumoniae TIGR4 # 2 124 3 125 126 156 63.0 1e-38 MKTIKTKQAPQAIGPYSQAKIVNGLLITSGQIPLDPETGKVVGTTIKEQTNQVLKNIQGI LTEAGSDFAHVVKTTCYLQNMADFTAFNEVYAEYFSAEYPARTTIEISKLPMDVLVEIEI IAEVVA >gi|307679191|gb|GL457056.1| GENE 46 39728 - 40105 426 125 aa, chain - ## HITS:1 COG:BS_patB KEGG:ns NR:ns ## COG: BS_patB COG1168 # Protein_GI_number: 16080196 # Func_class: E Amino acid transport and metabolism # Function: Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities # Organism: Bacillus subtilis # 3 106 280 383 387 96 44.0 1e-20 MTAYQKCGTWVDELNDYLAENQRYVKDFLQTYLPKIKVTELEATYLMWLDVSAAVPDVAR LQEALVSVGKVAIMDGSIYGGNGQRFLRLNIGCSQTKLHEGLERMRQGFEAVLQKDGTAS ALGNN >gi|307679191|gb|GL457056.1| GENE 47 40157 - 40933 597 258 aa, chain - ## HITS:1 COG:malY KEGG:ns NR:ns ## COG: malY COG1168 # Protein_GI_number: 16129580 # Func_class: E Amino acid transport and metabolism # Function: Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities # Organism: Escherichia coli K12 # 3 255 4 256 390 249 46.0 3e-66 MSFDKAIDRRGTYCTQWDFVEDRFGEADLLPFTISDTDFAVPEAVLATLQERLNHPVFGY TRWNHPQLKEAIQTWYQTRFQTKIEEHWIMYTQTVIYGISALIQLLTNEGEGIILQTPAY DAFFKVIQENKRQVVANELLYQEKRYSIDFIDLEKKLAQPENRCLLLCSPHNPTGRVWEQ WELERIVSLCQQYDVFLLSDEIHMDIVNKGHVHRPITQFDYKKSAIITSGTKTFNFPGLI FAYALIPDNELRDAFQLK >gi|307679191|gb|GL457056.1| GENE 48 40957 - 41658 711 233 aa, chain - ## HITS:1 COG:malX_1 KEGG:ns NR:ns ## COG: malX_1 COG1263 # Protein_GI_number: 16129579 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Escherichia coli K12 # 1 136 295 430 450 187 63.0 2e-47 MPTFIFGLPAAALAMYHTAAPANRHKIKGLLLSGVIATAITGITEPIEFLFLFISPLLWL FHVIMTGLGFMVMALLGVVIGNTDGGLLDFVIFGLLQGTYTKWWWVLIVGAIWFVVYYFV FKTVIVTFDLKTPGRDKVLDETEYTDQEVQYKKTGGYDAPGILAALGGQENIQAIDNCIT RLRLVLADANKVDDDKLKQLGALGVVHLDAQNVQVIIGTKVTTVRNQLEMILG >gi|307679191|gb|GL457056.1| GENE 49 41665 - 42525 911 286 aa, chain - ## HITS:1 COG:malX_1 KEGG:ns NR:ns ## COG: malX_1 COG1263 # Protein_GI_number: 16129579 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Escherichia coli K12 # 7 286 8 291 450 305 59.0 5e-83 MAVKKKKATFWEFFQGLGKTFMLPVALLAFMGILLGLGSSFSSESMIETVPFLGKPAVKI IFQFMSTIGGFAFAYLPVMFAMAIPLGLVRKEKGIAAFSGFVGYTVMNLAINFYLVQTNR LVDPEQLREAGQGMVFGIQTVEMGVLGGIIAGLIVYKLHNRFYTVQLPDSFAFFSGARFV PIITSLVMAFVGLVIPLVWPLFALMIMAIGQLIQRSGIFGPFLFGSGERLLLPFGLHHIL VSMIRFTEAGGSAVVAGKEVFGALNIFYAELQNNLPISPSATAFLS >gi|307679191|gb|GL457056.1| GENE 50 42674 - 43444 696 256 aa, chain - ## HITS:1 COG:BH2675 KEGG:ns NR:ns ## COG: BH2675 COG1737 # Protein_GI_number: 15615238 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 17 245 22 259 287 90 28.0 4e-18 MSTEGLIALLEKKRNHLSKIENQVLDYILTHMTEISSQTIYEVAQALFVSTATISRTAKH LGYRGFQELKYAIVQSVQSESTESDSRSFQAITQQLIANVQDSFQQMDEAKVAEMLKMIE RANTIEVFGVGGSFPICTDFARKLTFLGKKAYARSDWDEQAAAVKNLDGQDLAIFVSYTG ETKGILAYARVAQEQQVPMISLISTKGSTLEKLSTTTLFAKGTTRYHQRVDLSSRIAVIC LFDTVLLMYAEAKQPR >gi|307679191|gb|GL457056.1| GENE 51 43642 - 43845 236 67 aa, chain + ## HITS:1 COG:no KEGG:EF0026 NR:ns ## KEGG: EF0026 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 67 1 67 67 92 100.0 7e-18 MNNQRPMFINILLVVLLFLVVGSLFSAVVGIVGSLLWLAVKILVPVAIIVWLVRTISGNN GNCHRRY >gi|307679191|gb|GL457056.1| GENE 52 43893 - 44420 708 175 aa, chain - ## HITS:1 COG:SA2491 KEGG:ns NR:ns ## COG: SA2491 COG3247 # Protein_GI_number: 15928285 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 3 174 2 169 170 77 33.0 9e-15 MEQRQHHGMDWGSLVLGILFVLTALISFQNPAGNLIAIVMVFAIFAIIKGIFEIFVRNRM KELLGYKAYAPIILGIIDILIGVYLLFNLNIGVAVLPFVFAIWFLFDSIFGLFTLDFAKR VSTGYFWFTLIVDVLGIILGVMLLFNPLSSALTLSFLVGFYFMMFGISNIVYAFR >gi|307679191|gb|GL457056.1| GENE 53 44668 - 45045 419 125 aa, chain - ## HITS:1 COG:CAP0069 KEGG:ns NR:ns ## COG: CAP0069 COG4687 # Protein_GI_number: 15004773 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 123 12 134 135 194 78.0 5e-50 MVQSLNTKVDLVIDATAFTGLTDYGQIMIGDRGFEFYHAKDPRKFIQIPWEEVDYVLASV MFKGKWIPRYAIQTKKNGTYTFASKEPKRVLRAIREYVDPDHMVQSLSFFDVIKRGILSI GKKKK >gi|307679191|gb|GL457056.1| GENE 54 45207 - 46118 1315 303 aa, chain - ## HITS:1 COG:lin0145 KEGG:ns NR:ns ## COG: lin0145 COG3716 # Protein_GI_number: 16799222 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Listeria innocua # 1 303 1 303 303 502 86.0 1e-142 MAEKIQLTKKDRLAVAWRSTFIQGSWNYERMQNGGWAFSMIPAIKKLYKTKEERSAALKR HLEFFNTHPYIASPILGVTLALEEERANGAPVDDVAIQGVKVGMMGPLAGVGDPVFWFTV RPMLGALGASLAMGGNILGPILFFVAWNLIRWSFMWYTQEFGYKAGSKITDDLSGGLLQD ITKGASILGMFVLAALVQRWVSIKFLPIVSQVKLDKGAYIEWDKLPAGGEGMHKAFEQVN QGLALSPTKVTTLQDNLDQLIPGLAPLLLTFLCMWLLKKKVSPIVIILGLFVVGVVGHLI GLL >gi|307679191|gb|GL457056.1| GENE 55 46141 - 46944 1137 267 aa, chain - ## HITS:1 COG:lin0144 KEGG:ns NR:ns ## COG: lin0144 COG3715 # Protein_GI_number: 16799221 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Listeria innocua # 1 267 1 268 268 332 86.0 4e-91 MSVISIILVLLVAFLAGMEGILDEFQFHQPLVACTLIGLVTGNLEAGIVLGGTLQMIALG WANIGAAVAPDAALASVASAIILVLGGQGVKGVPSAIAIAVPLAVAGLFLTMIVRTVAVP IVHMMDAAAEKGNIKQVEMLHIFAVCLQGIRIAIPAGALLFIPADTVRNFLESMPAWLTD GMAIGGGMVVAVGYALVINMMATKEVWPFFIIGFVVAAISQLTLIALGALGVALALIYLN LSKMGGSSNSNGGGNSGDPLGDILNDY >gi|307679191|gb|GL457056.1| GENE 56 46979 - 47971 1279 330 aa, chain - ## HITS:1 COG:lin0143_2 KEGG:ns NR:ns ## COG: lin0143_2 COG3444 # Protein_GI_number: 16799220 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Listeria innocua # 166 327 1 162 165 243 84.0 3e-64 MVGIILASHGEFAEGILQSGAMIFGEQENVKAVTLMPSEGPDDVKAKMQEAIASFDNQDE VLFLVDLWGGTPFNQANSLLEDHKDKWAIVAGMNLPMVIEAYASRFSMESAQEIATHILE TAKDGVKVKPEELQPAEAPKAAATEDAQPKGSLPPGTVVGDGKIKFVLARIDSRLLHGQV ATAWTKATQPNRIIVVSDAVAKDDLRKKLIEQAAPPGVKANVIPISKMIEVAKDPRFGNT KALLLFENPEDVLKVVEGGVEIPEVNVGSMAHSVGKVVVSKVLSMGQEDVDTFDELKAKG IKFDVRKVPNDSKANMDEILKKAKNELANA >gi|307679191|gb|GL457056.1| GENE 57 48206 - 48718 558 170 aa, chain - ## HITS:1 COG:lin0776 KEGG:ns NR:ns ## COG: lin0776 COG3444 # Protein_GI_number: 16799850 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Listeria innocua # 3 163 1 161 161 189 63.0 1e-48 MVMDIRLARIDDRLIHGQVATVWAKLTNINRILVVSDSVAHDNLRKALLVQAAPPGVKVN VITVQKMIDVYPDPRFDSFRSMLLFTNPLDVKRVVEGGVQLTSVNIGGMSFSTGKRMITN AVAVDANDLKAFLFLNEQGIELEIRKVAADSQVNLMDLLKKERSKENNAS >gi|307679191|gb|GL457056.1| GENE 58 48921 - 51806 2747 961 aa, chain - ## HITS:1 COG:lin0778_1 KEGG:ns NR:ns ## COG: lin0778_1 COG1221 # Protein_GI_number: 16799852 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Listeria innocua # 1 469 1 461 464 408 45.0 1e-113 MKRIEKIYQYVKEQTKNLTPMTLTSDAGVTTQEISERLNIQRTNASKDLNQLVREGRLKK LSGRPVKYVAQVAFQHRPLTKPVKSYREKSMDHSTKTFIEPLVEPVVTTSKTPEVEDIFK KIIGSAGSMKTPVEQAKAAILYPPKGLNCLITGPTGSGKTYFAHAMFQFAKLNQIVAKEK EFVVFNCADYAHNPELLMSHLFGYVEGAFTGATKAKEGIIDEADGSILFLDEVHRLPPEG QEMIFYFMDHGVYARLGETVKSHHADVRIICATTENPTSSLLNTFVRRIPIIIQLPNFSD RPAKEKIDLLKVMVSMEAARIQRRISLSEDVVKALIGSVSYGNVGQLKSNVQLVTARGFL NQMEQEELMITMDELTDNIKEGIMQLASNREVLSELSKYLEPQLVVSPNESLVAIQSDAY ELPYNLYEIIGDKAALLKADGLDQELINNFITTDINVHLKSFYKDYGFTFDTENKLAEIV DQRIIDVTKKIYNFAAKRLSYSFQPNFIYAMSLHISSFLKRIQLGKDPKHPLNESIRNMV LDYPTEFETAKEIKNIIESSYQMEIPESESYYLAVLLISLRENPEAGRIGIVVAAHGNST ASSMVQVVSQLLNVDNLKAVDMPLDMPPKEALRKIVEAVGEVNEENGVLLLVDMGSLSTF SEEIVRQTGIDVRTVDMVTTPIVLEAARKTALIDTQLETLHESLKNFHGYADIRQSETKQ IIENWKTRAIIAICASGEGTARRMKELIEEAVLPQIDWHLEVIPLSIVNMKEVLPKIQED YEIIATTGITNPKIGVPYISMENFFSGEAEKIIQQLLAERKEEVMNKPLDEAAAKEICLK YMEQSFTFINGKKIIDLLWSFAKNIQTQLAMPEEYTFYINLIMHTSGMLERILRNDTLTV SEKELGRLVQEPIYSVIVASIETMEEALNMDVPAEEVYFIAQLVKNAQCIEDKITEIDTL D >gi|307679191|gb|GL457056.1| GENE 59 52059 - 53690 1833 543 aa, chain + ## HITS:1 COG:BS_ykpA KEGG:ns NR:ns ## COG: BS_ykpA COG0488 # Protein_GI_number: 16078507 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Bacillus subtilis # 1 540 1 539 540 798 72.0 0 MITVNDVSLQFPDRKLFEEVNIKFTPGNCYGLIGANGAGKSTFLKILSGEIQPTTGVVSM GPNERLATLKQNHFDYEDYTVLETVIMGHKRLYEVMKEKDAIYMKEDFSDEDGIRAAELE GEFAELDGWEAEPEAAVLLQGLNIPEELHDQKMSELTAGQKVKVLLAQSLFGKPDVLLLD EPTNGLDTRSINWLEEFLINFENTVIVVSHDRHFLNKVCTHMADLDFSKIKLYVGNYDFW LESSQLATKLQAQSNAKKEEQIKELQDFIARFSANASKSKQATSRKKMLDKITLDDIQPS SRRYPFVGFTPEREIGNDLLQVENVSVTIDGKKILDNISFNLTKDDKVAFIADSDITTTT LFKVIMGEITPDTGSVRWGVTTSQAYLPKDNSKDFEEPLTILDWLRQFAGKEEDDNTFLR SFLGRMLFSGEEVLKPVNVLSGGEKVRVMLSKLMLSKANVLVLDDPTNHLDLESITALND GLMAFTGSILFASHDHQFIQTLANRIIAVSDKGVIDRAETTYDEFLENPEIQKQMDVLFS SDY >gi|307679191|gb|GL457056.1| GENE 60 53868 - 54737 966 289 aa, chain - ## HITS:1 COG:L123851 KEGG:ns NR:ns ## COG: L123851 COG1307 # Protein_GI_number: 15673853 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 1 289 1 288 289 209 38.0 6e-54 MNYQLVTDSCCDLPYTYLKENQVPFISMNIQIDGKEYRDDLGETFDYQNFLTAIKNGSMP TTSQVNVGRYNEFFRPFVEQGLPVIYLAFSSGLSGSYQSALQSVEMLKEEYDNVEIHIID TKAASLGQGMLVREAIRLQTDGHSLGEVVAYLEEQKMKLHSWVTVDDLKHLERGGRISKT AAALGGLMNIKPIIRVDAAGKLASVGKTRGRNKSLQKIAQETIQGIVEPMKQTLLIAYAG TKDDAEKVKELIEKEIEVNEILIYPLGPTITSHTGIGCIAVFSFGEKRK >gi|307679191|gb|GL457056.1| GENE 61 54862 - 56265 1636 467 aa, chain - ## HITS:1 COG:SPy0160 KEGG:ns NR:ns ## COG: SPy0160 COG0104 # Protein_GI_number: 15674367 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate synthase # Organism: Streptococcus pyogenes M1 GAS # 38 467 1 430 430 753 85.0 0 MTETLLIVKEYSIFTLERDWFYWYNDSGQKNYERGVRMSSVVVVGTQWGDEGKGKITDFL SENAEVIARYQGGDNAGHTIKFDGVTYKLHLIPSGIFYKEKISVIGNGVVVNPKSLVKEL AYLKENNVATDNLRISDRAHVILPYHIKLDQLQEDAKGENKIGTTIKGIGPAYMDKAARV GIRIADLLDKEIFAERLQINLEEKNRQFVKMFDSEAIEFDDIFEEYYEYGQQIKQYVTDT SVILNDALDAGKRVLFEGAQGVMLDIDQGTYPFVTSSNPVAGGVTIGSGVGPSKINKVVG VCKAYTSRVGDGPFPTELFDETGETIRRVGKEYGTTTGRPRRVGWFDSVVMRHSKRVSGI TNLSLNSIDVLSGLETVKICTAYELDGELIYHYPASLKELSRCKPVYEELPGWSEDITGC KTLADLPANARNYVHRISELVGVRISTFSVGPDRNQTNVLESVWAQI >gi|307679191|gb|GL457056.1| GENE 62 56392 - 57759 1641 455 aa, chain - ## HITS:1 COG:L0286 KEGG:ns NR:ns ## COG: L0286 COG0305 # Protein_GI_number: 15672728 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Lactococcus lactis # 1 452 1 452 455 535 67.0 1e-152 MNELLQDRVPPQNIEAEQAVLGSIFLDADVLIEAMEYVEPKDFYRRSHQLIFQTMMTLSD RNEAIDVVTIKDRLEQENLLEDVGGLSYLSDLALAVPTAANVIYYAKIVEQKSLLRNLIQ TATEIVTKGFEQGEDVESILDDAERSILEVSEKRNRSGFLSISDVLNTTIANIDQLYQND EEITGLPTGYQALDKMTAGLQAEELIILAARPAVGKTAFALNIAQNVGTKTDKAVAIFSL EMGAESLVNRMLCAEGSIEASHLRTGQLSEEEWQNLIIAMGSLSRANIYIDDTPGIKITE IRAKCRKLAQEKGNLGLILIDYLQLIEGTGKENRQQEVSDISRQLKKLAKELKVPVIALS QLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYDRGEGEDGDHEPPEVDNVV EVIIEKNRSGARGTVELLFIKEYNKFSSLSPRTEF >gi|307679191|gb|GL457056.1| GENE 63 58032 - 58493 755 153 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227518097|ref|ZP_03948146.1| 50S ribosomal protein L9 [Enterococcus faecalis TX0104] # 1 153 1 153 153 295 98 7e-79 MKKMKVIFLQDVKGKGKKGDVKEVPTGYAQNFLIKNGYAKEANKGSMSALAGQKKAQEKH EAEVLAQAKEMQAFLEDEKTVVEIKAKAGEDSRLFGSIPSKQIAEALNKQYNVKLDKRKI ELANPIRSLGYTNVPVKLHHEVTAKIKVHVVAE >gi|307679191|gb|GL457056.1| GENE 64 58490 - 60466 785 658 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|162447066|ref|YP_001620198.1| bipartite protein: signaling protein and ribosomal protein L9 [Acholeplasma laidlawii PG-8A] # 9 647 6 659 818 306 30 1e-106 MQKKRIQKNGFLIVVGLLLVEFLLYFLLTNKWLLLAVIIALDIFLLVVIRLLIRDVEITN VEKIQEASSIAEQSLDYVVNEVPVGIITYNGETRAVEWLNPYAASIFNKDNQLTLTASQV TSYLELAERNQDIFTIDENTYRFSVNKEQHTITFEDITKESNLYQEKVEMQTAIGIVSVD NYDDVTDTMDEKEISYLNSFITTMVSDWMDQYKVFYKRINAERYFFIAQWEDIQKMMDEK FSILDTIRKESANHEVAITLSMGIAYGGPTLDQTGTTAQTNLDTALVRGGDQVVVKEAKD EAKPLFFGGKTAVTTKRSQVRSRAMSMAIKGIIAESADIYIMGHRYPDMDALGSAFGVAR LASFNNRKAWIVLDENEIIPDVKRVLEAIKEYPELEERIISPKEAMKRKKESSLLVMVDY HKPSLSISQELYERFDKVVIIDHHRRGDEFPAKPLLSYIESSASSASELVTELIEYQSNS ANKLQAFEATMMLAGIVVDTKSFNTRTTARTFDVASYLRTCGADSSLVQYLLSSDLTSYL EMNNLISKSEYVTKDTVVVAGSEDKEYDSVTAAKTADTLLSMAGINAAFVITKRTDQQIG ISARSNGSINVQIIMENLGGGGHFTNAAVQLSNVTVAEVKEQLLDVIRQNINEMYEQE >gi|307679191|gb|GL457056.1| GENE 65 60671 - 60910 397 79 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374670|ref|NP_813822.1| 30S ribosomal protein S18 [Enterococcus faecalis V583] # 1 79 1 79 79 157 100 2e-37 MAQQRRGGRKRRKVDYIAANHIEYIDYKDTELLKRFISERGKILPRRVTGTGAKNQRKLT IAIKRARIMGLLPFVSDEQ >gi|307679191|gb|GL457056.1| GENE 66 60936 - 61502 676 188 aa, chain - ## HITS:1 COG:L0302 KEGG:ns NR:ns ## COG: L0302 COG0629 # Protein_GI_number: 15674172 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Lactococcus lactis # 1 188 1 166 166 182 59.0 3e-46 MINNVVLVGRLTKDPDLRYTASGSAVATFTLAVNRNFTNQNGDREADFINCVIWRKPAET MANYARKGTLLGVVGRIQTRNYENQQGQRVYVTEVVCENFQLLESRSASEQRGTGGGSFN NNENGYQSQNRSFGNNNAGSGFNNNNNSFNPSSSQSQNNNGMPDFDKDSDPFGGSGSSID ISDDDLPF >gi|307679191|gb|GL457056.1| GENE 67 61547 - 61849 510 100 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29374668|ref|NP_813820.1| 30S ribosomal protein S6 [Enterococcus faecalis V583] # 1 100 1 100 100 201 100 2e-50 MSQDTKYEIMYIIRPNIDEEAKTALVERFDTILKDNGAEVIESKDWEKRRLAYEMNGFRE GIYHIVNVTSPSTAGAINEFDRLAKINDDIIRHMIVKVEA >gi|307679191|gb|GL457056.1| GENE 68 62024 - 64525 3234 833 aa, chain - ## HITS:1 COG:SPy1152 KEGG:ns NR:ns ## COG: SPy1152 COG0188 # Protein_GI_number: 15675129 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Streptococcus pyogenes M1 GAS # 8 832 5 827 828 1119 70.0 0 MSEEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTP DKPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAA MRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMA TNIPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGS ITVRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREG MRIVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKE VITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQ AQAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFG DARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQGMGVH DDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQA IISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVTTNGNQ KMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYVVGAAILDENKEVLVITENGY GKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGDEDILLITNKGVIIRFNVDSV SQTGRATLGVRLMRMEDGAKVVTMAVVEPEEVEEEIVEVVETTENETTSETEE >gi|307679191|gb|GL457056.1| GENE 69 64581 - 66530 2415 649 aa, chain - ## HITS:1 COG:L0283 KEGG:ns NR:ns ## COG: L0283 COG0187 # Protein_GI_number: 15672887 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Lactococcus lactis # 1 643 1 646 651 961 77.0 0 MTEEEKNMRERAQEYDASQIQVLEGLEAVRKRPGMYIGSTSGEGLHHLVWEIVDNSIDEA LAGFAKSIQVIIEPDDSITVIDDGRGIPVGIQAKTGRPAVETVFTVLHAGGKFGGGGYKV SGGLHGVGSSVVNALSTSLDVRVYKDGKVYYQEYRRGAVVDDLKVIEETDRHGTTVHFIP DPEIFTETTVYDFDKLATRVRELAFLNRGLHISIEDRREGQEDKKEYHYEGGIKSYVEHL NANKDVIFPEPIFIEGEQQDITVEVSMQYTDGYHSNILSFANNIHTYEGGTHESGFKTSL TRVINDYARKQKLMKENDEKLTGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSEVRTVT DRLFSEYFTKFLMENPTVGKQIVEKGMLASKARLAAKRAREVTRRKGALEISNLPGKLAD CSSKDPEKCELFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILANEEIRS LFTAMGTGFGEDFDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRFMRPIVEAGYVYIA QPPLYGVKQGKNITYVQPGKHAEEELAKVLEELPASPKPSVQRYKGLGEMDDHQLWETTM DPEKRLMARVSVDDAIEADQIFEMLMGDRVEPRRAFIEENAHYVKNLDI >gi|307679191|gb|GL457056.1| GENE 70 66527 - 67654 1085 375 aa, chain - ## HITS:1 COG:lin0005 KEGG:ns NR:ns ## COG: lin0005 COG1195 # Protein_GI_number: 16799084 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair ATPase (RecF pathway) # Organism: Listeria innocua # 1 372 1 370 370 399 55.0 1e-111 MRLNELTLQHYRNYETVSLDFPKTLNLFLGENAQGKTNLLESIYVLAMTRSHRTSNEKEL IGWEQAAAKISGVVEKKTGTVPLEILISNKGRKTKVNHIEQKRLSAYIGQLNVILFAPED LSLVKGSPQVRRKFIDMELGQVSPIYLYDLVQYQSVLKQRNQYLKQLAEKKQTDTVYLDI LTEQLAEFGGKVLYARLGFLKKLEHWANLLHQKISHGRETLTIDYASSIPIDNTDLSLEA LQNQLLQQLMNNRKRELFKANTFLGPHRDDLLFIVNGQNVQTYGSQGQQRTTALSIKLAE IDLMHSETGEYPVLLLDDVMSELDNERQIHLLETIEGKVQTFLTTTSLDHIKDKLTVEPD IFYVQQGKIERNSAT >gi|307679191|gb|GL457056.1| GENE 71 67641 - 67886 337 81 aa, chain - ## HITS:1 COG:BS_yaaA KEGG:ns NR:ns ## COG: BS_yaaA COG2501 # Protein_GI_number: 16077071 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 70 1 70 71 70 52.0 5e-13 MKKTFVLATEYITLGQFLKEINVIGSGGQAKWYLADNSVFVDGELENRRGRKLYAGMMIE IPEEGTFFMVKNGNESDDAAE >gi|307679191|gb|GL457056.1| GENE 72 68466 - 69596 1404 376 aa, chain - ## HITS:1 COG:BS_dnaN KEGG:ns NR:ns ## COG: BS_dnaN COG0592 # Protein_GI_number: 16077070 # Func_class: L Replication, recombination and repair # Function: DNA polymerase sliding clamp subunit (PCNA homolog) # Organism: Bacillus subtilis # 1 375 1 377 378 343 51.0 3e-94 MKLTVKRSVFLQELQTVQRAISSKTTIPILTGVKIVLSEDGLSLTGSNADISIESFLSKD DEKAQMTIERTGSIVLQSRFFGEIIRKLPEDMFTMEVLDNNQVAITSGKADFTVNGLDAD NYPHLPVIDTQNQMKLPVHLLTKIISETGFAVSMHESRPILTGVHFILENQKLLAVATDS HRLSQRVIPTEQAVEDFNIVIPGKSLTELSRSLTNEEEMVEISIMENQVLFKTETMYFYS RLLEGNYPDTNRLIPTSHNTQIEFYVPELLSAIERASLLSHEGRNNIVRLSISPDSVVLY GNSPEIGKVEEALNYENVSGEALDISFNPDYMKDALRAFGDMNITVKFLSPIRPFTLEPT ETELDFIQLITPVRTN >gi|307679191|gb|GL457056.1| GENE 73 69798 - 71141 1428 447 aa, chain - ## HITS:1 COG:BH0001 KEGG:ns NR:ns ## COG: BH0001 COG0593 # Protein_GI_number: 15612564 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Bacillus halodurans # 1 447 1 449 449 474 53.0 1e-133 MPDVESFWHSLEEAYQAILSAPSFDAWIKTTRPLKLDNNQLWLEVPSAVHRDYWEKNLSA KIVETGFKLTGAEVMPHFVVADEKDAALAQELEEPAEEEVVFSEQSKKAMLNPKYTFDTF VIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMLVNQPDAKVKYV SSETFTNEFINSIQTKTSEQFRKEYRNVDLLLVDDIQFLAEKEATLEEFFHTFNDLYNEN KQIVLTSDRPPNDIPKLPERLVSRFAWGLSVDITPPDLETRIAILRKKADAERLEIPDDT LSYIAGQIDSNIRELEGALVRVQAFATINGEDITTSLAADALKSLKSVGSKNQLSILQIQ EEVSKYYHVPLKDLKGKKRVKTIVVPRQISMYLAREMTDNSLPKIGAEFGGKDHTTVIHA HEKIQQLLEKDPAIQKEVSEIKNLLNS >gi|307679191|gb|GL457056.1| GENE 74 71153 - 71224 58 23 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLKSTMLILLSYPHFLDNQNLNI >gi|307679191|gb|GL457056.1| GENE 75 71664 - 71798 223 44 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|29377774|ref|NP_816928.1| 50S ribosomal protein L34 [Enterococcus faecalis V583] # 1 44 1 44 44 90 100 3e-17 MKRTYQPNKRKRQKVHGFRKRMSTKNGRRVLASRRRKGRKVISA >gi|307679191|gb|GL457056.1| GENE 76 71996 - 72358 347 120 aa, chain + ## HITS:1 COG:SPy0246 KEGG:ns NR:ns ## COG: SPy0246 COG0594 # Protein_GI_number: 15674428 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNase P protein component # Organism: Streptococcus pyogenes M1 GAS # 3 114 1 110 119 111 58.0 3e-25 MPMKKSYRVKKEKEFQQVFNKKQSCANRRFVVYVLEKPQQAHFRVGISVGKKIGNAVTRN AVKRKIRASLFQLKDRISPEIDFIVIARPGLEKLSSEEVKANLTHVLNLAKILDVREGIE >gi|307679191|gb|GL457056.1| GENE 77 72358 - 73185 1019 275 aa, chain + ## HITS:1 COG:L131778 KEGG:ns NR:ns ## COG: L131778 COG0706 # Protein_GI_number: 15672111 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Lactococcus lactis # 23 266 21 267 269 270 57.0 2e-72 MKKYKRLLLMAGLVTLVFVLSACGTAPVSESSTGIWDRYIVYYFAQAIKFLSLGGSVGIG IILFTLVIRIILLPLMHFQTKSMRKTQELQPQLKALQQKYSSKDPETQRLFREEQQRLYA ENNVNPYIGCLPLLVQLPIMMALYQAISRVPELKEGTFLWLSLDKPDPYLILPILAAVFT FASTYLSSMSQLETNASLKIMNYVMPAMIFFMGISLASSLSLYWVVSNAFQTGQTLLLNN PFKIRKEREEAARQAKARERALERAKSPKKKGKKK >gi|307679191|gb|GL457056.1| GENE 78 73200 - 73976 1110 258 aa, chain + ## HITS:1 COG:lin2985 KEGG:ns NR:ns ## COG: lin2985 COG1847 # Protein_GI_number: 16802043 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein # Organism: Listeria innocua # 63 256 11 206 206 139 41.0 5e-33 MPIYEGNTIEEATQKGLQALGLTKEDVTIDVLDEGKKGFLGLGKKLAQISMEPTISEQVT EAVEETVEDIVVADEATAVEEAVEELTEAIPSLSEESTHSLENLEDEAAITELAMYLTNI SNELNAPAMVRIARENGNIIFHLETEKQGILIGKHGKVLNALQYLAQVFIHRIASNKLSI VVNVGNYREKRHEILERLAKRTAEKAKRTGRPVFLEPMPAFERKQIHHTLSKDEQIKTHS EGDEPYRYLVVEPVKKYF >gi|307679191|gb|GL457056.1| GENE 79 74343 - 75065 682 240 aa, chain + ## HITS:1 COG:BH0820 KEGG:ns NR:ns ## COG: BH0820 COG0745 # Protein_GI_number: 15613383 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus halodurans # 1 229 1 228 234 131 33.0 1e-30 MRTEKILVVDDDAAVRRLIWKALQSTGILIYQSESIEKTKDIVSRVTFDLFILDDNLEHD SDGYYLVQMIREKYPLVPIIFFSSKKEEEDIIAALEMGVDSYITKPFSLNVFKAQVIASL NRARMIRKQLNVYKKEELQVGDFRFDYGRYQLFKKDLPISLSSKEVQLIQFFLENPEQVF SKEQIYSSVWGTGDVDANTIMVFINRLRSKLEENPKEPCYLRTVWGIGYTFTPDGCVQKK >gi|307679191|gb|GL457056.1| GENE 80 75109 - 75804 829 231 aa, chain - ## HITS:1 COG:SPy1179 KEGG:ns NR:ns ## COG: SPy1179 COG1802 # Protein_GI_number: 15675151 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 229 1 229 231 258 61.0 5e-69 MNPTVEAVKRNLDLTSSKPLKICTYEAFKKTIILGDIPAGERINEKEFSEQLNISRTPIR FALQELVKEQLVEHIPMVGIVVKGISMKDAYEIYDIRKSLDTLATIKAMELMTPEDFDEL EALLLEGEQYNKNNQVDDLLQNFSDFNSFIYTKSQMLRLKKIVTDLHAYLIYFRDIAIRA SERRSIALEEHWLIFRGMKTKNIDQITLLTHEHLNRSLQFILKEMERRQIE >gi|307679191|gb|GL457056.1| GENE 81 75938 - 77335 1703 465 aa, chain - ## HITS:1 COG:SPy1180 KEGG:ns NR:ns ## COG: SPy1180 COG2851 # Protein_GI_number: 15675152 # Func_class: C Energy production and conversion # Function: H+/citrate symporter # Organism: Streptococcus pyogenes M1 GAS # 1 464 2 468 468 588 74.0 1e-168 MLLTILAYGMIIIFMYVIMKKKLSPFTSLVIIPLIFTLIAIATGVASPPPGADGVVPEVN IGNFVLDGISTTSKTGIMLLFAILYFSIMLDAGLFDPITKKMIYFAKGDPMKVLMATAVV AAAVSLNGDGTTTTLICCSAFIPIYKKLNMKLMNLGVLVILQNTIMNLLPWGGPTARAMA VLEVDADILSYLAPGMILSVLYVIFFVAYRMGKKERARLGVTTLTDKELEEMTIVNDPEL LEIRRPKNFAFNGILTIVLIGWLVLSSFVGQLGLPSWIEMPPLLLFLVGTCIALMINYPK LKDQSSRISANAGDAVQVVILVFAAGVFMGLFQGSGMANALANSFVNIIPKQLAGAWGLV IAFISAPGTFFISNDGFYFGVLPVLAEAGRSYGFDNMSMALASLMGQAFHLLSPLVAFIY LLLRLTGLDMGQWQKESAKYALGIFVIFVVTIVALGHMPLFIPQN >gi|307679191|gb|GL457056.1| GENE 82 77740 - 78102 430 120 aa, chain + ## HITS:1 COG:no KEGG:EF3326 NR:ns ## KEGG: EF3326 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 120 1 120 120 177 100.0 9e-44 MGLFKSLFKKEQHTQDTEINESVIQREADNLEKRWIDIPAYIPAEPKEYQLVSIVATAIA AGEFPESRFVIKKIAKRNPEAKEVAIIAASIAAELSEESQLVVKRISKQNLEEDHYVTQI >gi|307679191|gb|GL457056.1| GENE 83 78086 - 78487 577 133 aa, chain + ## HITS:1 COG:SPy1183 KEGG:ns NR:ns ## COG: SPy1183 COG0511 # Protein_GI_number: 15675154 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxyl carrier protein # Organism: Streptococcus pyogenes M1 GAS # 1 132 2 131 132 119 68.0 1e-27 MLRKFKISIDGKEYLVEMEEIGGVPQPAPVAPQPTAPVATTETPAPAVEEAPAPAAQPTA PAGADAMPAPMPGTVLKVLVNVGDTVSENQPLLILEAMKMENEIVAGKAGTVTGIHVTQG QIVNPGEPLITIN >gi|307679191|gb|GL457056.1| GENE 84 78517 - 79632 1568 371 aa, chain + ## HITS:1 COG:SPy1184 KEGG:ns NR:ns ## COG: SPy1184 COG1883 # Protein_GI_number: 15675155 # Func_class: C Energy production and conversion # Function: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 371 1 373 373 463 77.0 1e-130 METLIQGVIGMGQEPGRIVMMLIGGLLMYLGIKKEYEPTLLVPMGLGTILVNFPNSGVLS AGGEPGPFNVLFDFGIKTELFPLLLFIGIGAMIDFGPLLQNPFMLMFGAAAQFGIFFTVI MAVLLGFDLNDAASIGIIGAADGPTSIFVANTLHSKYMGAIMVAAYSYMALVPIIQPVAI KAVTTKAERRIRMTYRAGEVSQTAKILFPVVITIVAGLIAPVSLPLVGFLMFGNLLRECG VLDRLSITAQNELVNIISILLGLSISVSMNYAEFLKVDTLMVIGLGLVAFIMDSVGGVLF AKFLNLFRKEKINPMIGAAGISAFPMSSRVIQKMATDEDPQNFILMHAAGANVSGQIASV IAGGLLLAFLT >gi|307679191|gb|GL457056.1| GENE 85 79654 - 79788 252 44 aa, chain + ## HITS:1 COG:no KEGG:EF3323 NR:ns ## KEGG: EF3323 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 44 1 44 44 66 100.0 4e-10 MSVNMEDLKIAFELLGFGWGGVFVVLFIIYLASKLLTKLFPIKK >gi|307679191|gb|GL457056.1| GENE 86 79803 - 80813 1030 336 aa, chain + ## HITS:1 COG:FN0319 KEGG:ns NR:ns ## COG: FN0319 COG3053 # Protein_GI_number: 19703664 # Func_class: C Energy production and conversion # Function: Citrate lyase synthetase # Organism: Fusobacterium nucleatum # 15 329 10 325 345 233 41.0 5e-61 MSSVYTMKRIWLQKDKKAYQAWRELMEKAELQTTEALDYTVGIYDDTALIASGSLSGKTI KCVAVCKKYQSENLLTQLVVHLLEKLREENQLHSFLYTKPKNEQIFQSLGFQKVVANQEV LFMEQGKPDFADYLGYLTQHKKAGPASSIVMNANPFTKGHQYLVEKAAKESPHVYVFVLS EDKSLFSKEARFAMVQKGVAHLPNVTVLSTEDYLVSSATFPTYFLKEKAPLEVAAIQATL DATLFKERIAPILEIQQRYVGEEPYSEVTAVYNQAMQQVFGQTITLTIVPRLASDGELIS ATKVRKAMAEGDKETLKKFLPATSYQYLVEHKKLMR >gi|307679191|gb|GL457056.1| GENE 87 80819 - 81127 426 102 aa, chain + ## HITS:1 COG:SPy1186 KEGG:ns NR:ns ## COG: SPy1186 COG3052 # Protein_GI_number: 15675156 # Func_class: C Energy production and conversion # Function: Citrate lyase, gamma subunit # Organism: Streptococcus pyogenes M1 GAS # 1 102 1 102 102 108 58.0 2e-24 MKIIKNATAGTVESSDIMITIQPIESTENTIELESSVEKQFGNQIRQVITTTLEHLDVQG VAVKAIDKGALDCTIKARMITVLHRGAEKETYDWKELDSWNV >gi|307679191|gb|GL457056.1| GENE 88 81115 - 82002 1187 295 aa, chain + ## HITS:1 COG:SPy1188 KEGG:ns NR:ns ## COG: SPy1188 COG2301 # Protein_GI_number: 15675157 # Func_class: G Carbohydrate transport and metabolism # Function: Citrate lyase beta subunit # Organism: Streptococcus pyogenes M1 GAS # 1 295 1 295 295 436 83.0 1e-122 MERLRRTMMFVPGANAAMLRDAPLYGADSIMFDLEDAVSLKEKDSARVLVHSALKTFDYG NIEIVVRINALDAGGAEDIEAMVLAGVDVIRLPKTETAQDIIDVEAVITEVEQQNDIPVG TTKMMAAIESAEGVLNALAIAKSSTRLIGIALGAEDYVTNMKTRRHPDGQELFFARSMIL HAARAAGIAAIDTVYSDVDNTEGFEAEVRLIKQLGFDGKSVINPRQIPLVNTIYAPTEKE IQNAKEVIWGIREAEAKGSGVISVNGKMVDKPIVERAERVIALALAAKLITEEEI >gi|307679191|gb|GL457056.1| GENE 89 82005 - 83537 1865 510 aa, chain + ## HITS:1 COG:SPy1189 KEGG:ns NR:ns ## COG: SPy1189 COG3051 # Protein_GI_number: 15675158 # Func_class: C Energy production and conversion # Function: Citrate lyase, alpha subunit # Organism: Streptococcus pyogenes M1 GAS # 1 510 1 510 510 840 84.0 0 MVVNKVGKDIPQSYAEQYGIYEGELAHIDAYQEASRAIKPVKPRETKLLGSIREAIEKTG LKDGMTISFHHHFREGDYVMNLVLAEIAAMGLKNISIAPSSIANVHEPLIEHIKNGVVTN ITSSGLRDKVGAAISAGIMENPVVIRSHGGRARAVAAGDIHIDVAFLGAPSSDAYGNANG TKGKATCGSLGYAMVDAKYADQVVIITDTLVPYPNTPISIPQTDVDYVVEIDAIGDPDGI AKGATRFTKNPKELLIAEYAAKIITHSPYYKEGFSFQTGTGGSSLAVTRFMREQMLKDGI KASFALGGITNAMVELLEEGLVEKIIDVQDFDHPSAISLGENANHYEIDANMYASPLSKG AVFNQLDTAILSALEVDTDFNVNVITGSDGVIRGASGGHSDTSMACKMSLVIAPLVRGRI PTIVEQVNTVVTPGTSVDVVVTEVGIAINPKRTDLIDCFKTLDVPQFTLEELKDKAYNIV GTPEPIKYGDKVVALIEYRDGSLIDVVRNV >gi|307679191|gb|GL457056.1| GENE 90 83518 - 84066 537 182 aa, chain + ## HITS:1 COG:SPy1190 KEGG:ns NR:ns ## COG: SPy1190 COG3697 # Protein_GI_number: 15675159 # Func_class: H Coenzyme transport and metabolism; I Lipid transport and metabolism # Function: Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) # Organism: Streptococcus pyogenes M1 GAS # 6 173 7 175 192 142 47.0 3e-34 MWYAMFNGEKVTLLEMLDAREQRAATQKELLETAPEASLLSATMNIPGEVKNSPTLTAVF LEVIDEVEQQLLDQVPIVNFYRNEKTGPEYYLAVSLAPQELKQRMVKIEETHPYGRLVDL DVLWGNEELKSLHRGDLGLPPRRCFMCQEEAKVCGRNRRHSLEAMQEKITEIILTRKEQP SE >gi|307679191|gb|GL457056.1| GENE 91 84059 - 85456 1766 465 aa, chain + ## HITS:1 COG:SPy1191 KEGG:ns NR:ns ## COG: SPy1191 COG5016 # Protein_GI_number: 15675160 # Func_class: C Energy production and conversion # Function: Pyruvate/oxaloacetate carboxyltransferase # Organism: Streptococcus pyogenes M1 GAS # 4 465 8 469 469 745 78.0 0 MSKKIRFTETVLRDGQQSLIATRMPTSDMLPIIKTMDEAGFHALEMWGGATFDSCVRYLN EDPWERLRQIRKEVKNTKLQMLLRGQNLLGYRHYADDVVRAFVEKSVENGIDIIRIFDAL NDVRNLQTAIQTTKEAGGHCQAAISYTTSEIHTIDYFVKLAKELSQTGADSICIKDMAGV LTPQTGFELVSKMKDAIDLPLEVHTHATSGISEMTYLKVAEAGADIIDTAISSFAGGTSQ PATESVAIALEDLGFETGLNMEKVTEIADYFNPIRDRFRSEGILNPKVKDTEPKTLIYQV PGGMLSNLLSQLTEQGLQDKYEEVLAEVPKVRADLGYPPLVTPLSQMVGTQALMNVISGE RYSLIPNEIKDYVRGEYGKSPAPIAEEIKQKIIGDEEVITCRPADLLKPELHSLEKEIQQ YAKSEEDVLLYAMFPQQGKDFLGRREDPFYDVPLQKVTVKLDLPE >gi|307679191|gb|GL457056.1| GENE 92 85574 - 86746 1201 390 aa, chain + ## HITS:1 COG:L3227 KEGG:ns NR:ns ## COG: L3227 COG0281 # Protein_GI_number: 15673168 # Func_class: C Energy production and conversion # Function: Malic enzyme # Organism: Lactococcus lactis # 2 380 4 380 380 380 54.0 1e-105 MLEEVLAIHQKNIGVLSLEATEAVLNHHDLAKMYTPGVAELSLMIAQNHELAREWTISGK LIAVITDGSAVLGLGNMGTQAGLPIVEGKALLYKNLAGVDAIPLALEQKSVDEMVQTIEN LQNSFAGIHLEDISAPKCFEIEEKLQQRLNIPVYHDDQEGTAIVVLAGLINAAKIKGKPL NELRVVINGVGASGVATAKLCIQAGITHLTLVDRQGVLREEDPTLNPYQRALLRQVIKPS VENKDLATAVVNQDVFLGLSEADVLTPALIKSMNQDPIIFALANPKPEIEPALAQANGVR LLATGSSKYPNQVNNILAFPGLFKGLLAAKGRKVDVGLQMTVARSLAAMISEPTAEKFIP NVFDGGVVDTVFNAVLDYIKQEKATAEEGT >gi|307679191|gb|GL457056.1| GENE 93 86753 - 87622 863 289 aa, chain + ## HITS:1 COG:VC0801 KEGG:ns NR:ns ## COG: VC0801 COG1767 # Protein_GI_number: 15640819 # Func_class: H Coenzyme transport and metabolism # Function: Triphosphoribosyl-dephospho-CoA synthetase # Organism: Vibrio cholerae # 16 284 39 308 313 155 37.0 9e-38 MTKQARSKLAQQAQLALLYEVTCLNKPGLVDPVDAGAHQDMDVFTFLESSVVLTPYFETF VQAGTELRHLPIEATFRTIRQVGLEAERAMFEATEGINTHKGAIFSLGIFLAICGRLMIW ETPCTLQLFQQTLQTMTQDLLADFENLATNELEKLTWGERLFVQHGLTGIRGEAQQGYPA VFEQGVPYYQKHQGTQQQKLIDTLLYLSLYVEDTNLIKRSQNVQIFEIYQPLIQEYFASG GTQTLRGTLCLERLNHLFKEKNWSIGGSADALILVVFLDKLMKLNWLTP >gi|307679191|gb|GL457056.1| GENE 94 87607 - 87780 128 57 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307268895|ref|ZP_07550259.1| ## NR: gi|307268895|ref|ZP_07550259.1| hypothetical protein HMPREF9498_01025 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9498_01025 [Enterococcus faecalis TX4248] # 1 57 1 57 57 92 98.0 1e-17 MADPLIKKIVTTLIWSVILTLYAYGKVSREFKKAIDKYHETQYILLRNHSYQSIQIR >gi|307679191|gb|GL457056.1| GENE 95 87989 - 88114 62 41 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTYSHKIDKNSQRSRKNNSGISQKNKKIFRYLIIDLSNDKL >gi|307679191|gb|GL457056.1| GENE 96 88411 - 89925 1630 504 aa, chain + ## HITS:1 COG:BH2080 KEGG:ns NR:ns ## COG: BH2080 COG1404 # Protein_GI_number: 15614643 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus halodurans # 355 502 893 1029 1052 63 35.0 7e-10 MKKKIVEDFNRKSQHKKWTKRKMLNLAISSGLLFTSLAIPVSIAVTSGTISASAAVLDIE LLSNVTSNNDSSTSTSNRWTAANQNQPVNFTVSGGALADASAVFSGQKQAVLVVPPELRG NVAAAGSAAINTNVTIDLSKVTFLTAVLNAANDLTNVITQITSGALGNLTGVDIDLTEVN RQLELVNNIENLGAASFTASETLAADGSYISAPISDGLGLVLAQNVSNILQDLNAAVQAL EAKGTSIPSNLVATAINAALLPVKGTVNVAVSGALPLLAVGGSGVNELVDASLLGATTVT LPTTVSTPQNLSNNLDARFVGTVVQTDLLDVNLLATADGVSNIYFAAGTTSEVTAPTVTG VTGNSTAGYEVKGTADANATVEIRNAGGTVIGTGTADGTGAFTVTIPAGEAGANETLTAV AKNASGTESTPTTFQTPADETTVTAPTITGVTGNSTAGYEVKGTADANATVEIRNAGGTV IGTGTADGTGAFTATIPAGEAGAN >gi|307679191|gb|GL457056.1| GENE 97 90190 - 93237 3848 1015 aa, chain + ## HITS:1 COG:BH2080 KEGG:ns NR:ns ## COG: BH2080 COG1404 # Protein_GI_number: 15614643 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus halodurans # 19 345 741 1047 1052 102 30.0 3e-21 MATPIVETVTGSTTKGYEVKGTAEVGTTIEVRDAAGTVLDTATTGTDGKYTVTLDSGTAT ANQTLSVVAKNASGTESQPATATTPADVTAPTVDNITGNSGSGYEITGTADSNTTIEVRD PSGAVIGTGTSDANGDFTVTLPTGTTNPGDTLTVIGKDNAGNESQPTEVLVPADATVTAP TVTGVTGNSVAGYQVTGTADPNATIEIRDADGNVIATGTADGTGSFAVNLPARTANANET LTALAKDPDGNTSTPTTFQTPADEVVAPPSVDKVTGNTTQGYQVTGTAELGTTIEVRATD GTVLGTAITGPTGQYTVTLASGKATAKQTVNVVAKNDTGLESQPTTAMTPADVTTPTIGD ITGDSTTGYEITGTADPNTTIEVRNPDGTIIGTTTTDDQGNFTVDLPAGAANPGDTLTVV GKDGDGNESQPTEVTVPEDATVAAPTVTTVTGTTATGYQVTGTAEPNVTIEIHNEAGLVI AMGTTDGAGAFTITLPTGTATANEALTAIAKDAAGKESNPTAFKTPADPDAPVATPTVDK ITGSTTNGYQVVGAAEVGTTVEVRDADGTVLGMATTGTDGKYTVTLEPGKASANETITVV AKNATGKESQPATATTPADLATPTIDSITGNSGKGYEITGTAEPKTTIDVRDADGTIIAA TTVNETGQYTVTLPAGVVTPGETITIISKDGAGNESQPATAVIPADVVLAAPTITKVEGN KANGYTVTGTADPNVTVQFYNSSEQLLASGNTTTGGTFSVHIAAGLATEKETLTALTTDT QGNVSPKTTFMTPADITGEPEIKIAAPTVSSVLGTSKAGYLIKGTAEPNRIIQISNRLLR SVIAVGATDAEGNFAIQLTAGQATAQQSLLATATDGAGHYSTATTFMTPADPTNPGGGNG NTGGNNGNTGDNTGKNGATGGNNGNGSNTGSNPNGGSGLGTTGSGLGSLGNGLGTNGSGY HPKLSTISYGTGNHGKTGYLPSTGEKESSAVTTSLFGAFVALLASMGIIKRKRKN >gi|307679191|gb|GL457056.1| GENE 98 93470 - 94867 1913 465 aa, chain + ## HITS:1 COG:lin2943 KEGG:ns NR:ns ## COG: lin2943 COG0486 # Protein_GI_number: 16802002 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Listeria innocua # 6 465 1 457 457 606 71.0 1e-173 MQSATMEFDTIAAISTPPGEGAISIVRLSGEQAVAIANKVYRSGTKDLAKVPTHTIHYGH IVDPQNDQLIDEVMLSVMRAPKTFTREDVVEINCHGGIVVVNQLLQLLLREGARMAEPGE FTKRAFLNGRMDLSQAEAVMDLIRAKTDKAMNVALNQLDGNLSALIRSLRQEILNTLAQV EVNIDYPEYDDVEELTTKLLLEKAEFVKAQIQQLLTTAKQGKILREGLSTAIIGRPNVGK SSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETEDIVERIGVERS RKALADSDLILLVLNQSEELTEEDRQLLEATKGLKRVILLNKMDLPTKLDPNELQELVPA EEILSVSVLSNTGLDQLEAKIADLFFGGQTGEKDATYISNTRHIALLDQAALSLQEVING IEAGMPVDLVQIDMTRCWDYLGEIVGDSVQDELITQLFSQFCLGK >gi|307679191|gb|GL457056.1| GENE 99 94887 - 96785 2341 632 aa, chain + ## HITS:1 COG:lin2942 KEGG:ns NR:ns ## COG: lin2942 COG0445 # Protein_GI_number: 16802001 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: NAD/FAD-utilizing enzyme apparently involved in cell division # Organism: Listeria innocua # 1 630 1 627 629 911 74.0 0 MNQYQAESYDVIVVGAGHAGSEAALAAARMGVKTLLLTINLDMVAFMPCNPSVGGPAKGV VVREIDALGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYATEMKHTIEKEENL TLRQGIVEELIVEDGVCRGVVTSTGAAYRSQAVVITAGTALRGEIIIGELKYSSGPNNSQ PSVGLANHLKELGLEIDRFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSYSTLDSAYNQ NQEPCWLTYTNETTHEIIQKNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFL EPEGLNTEEVYVQGLSTSLPEDVQTEMLHSIEGLEKVEMMRTGYAIEYDVVVPHQLRPTL ETKVIENLYTAGQTNGTSGYEEAAGQGLMAGINAALKIQGKEPLVLKRSDGYIGVMIDDL VTKGTNEPYRLLTSRAEYRLILRHDNADLRLTEMGHEIGLVKEEQYAAYLVKKAAVEAEI ARLGKHRIKPTKEVQAFLETKGAAGLKDGILARDFLKRPEISYQEVAQFIPAPEEALDPK VIEQVEIQIKYEGYIKKAMEKVEKLKRMEAKRIPENIDYQAINGLATEAKQKLQKIQPET IAQASRISGVNPADISILMVYIEQGKIAKVQG >gi|307679191|gb|GL457056.1| GENE 100 96957 - 97757 971 266 aa, chain + ## HITS:1 COG:Z5618 KEGG:ns NR:ns ## COG: Z5618 COG1028 # Protein_GI_number: 15804613 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Escherichia coli O157:H7 EDL933 # 1 266 1 268 268 323 61.0 3e-88 MTDWLGIKGKVVIVTGGSSGIGRSIVESLLAQEVYVANFDISASETQHEHLLFVKVDVTS RAEVEAGVAQVVEKFGTVDGLVNNAGINIPRLLVDKNHPHGPYELSDEVFDKIVAINQKG LYLMSQAVGRILVQKQAGVIINMSSEAGLEGSEGQSAYAATKAAVSSYTRSWAKELGKSN VRVVGIAPGIMEETGLRTLAYEEALAYTRNISVEQLRAGYSKTSTIPLGRSGKLHEVADL VCYYLSDRSSYITGITTNVAGGKTRG >gi|307679191|gb|GL457056.1| GENE 101 97773 - 99635 1422 620 aa, chain + ## HITS:1 COG:BS_licR_1 KEGG:ns NR:ns ## COG: BS_licR_1 COG3711 # Protein_GI_number: 16080911 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Bacillus subtilis # 28 456 28 481 499 95 20.0 3e-19 MTLVNRWYQVIKLLVDHKGMSLQELQEKLAASPQTVRKNIDTLNDELIGIAQIIQKENLF QLEINNFEGFEEVLSGRLKRESDFNSSSKRVSYIIKRLIEEDQFISTYDLSEELAVSRGT VNKDIKRMKELIAPWQVAVVGTPNRGIHLEGKEFDLRLLHVNYVQEYFEEQFLHETTKQM IQKIIKETRLAKQDSFLLRRVVSIVLQRVLAGKLITELPPEYVDYVRHNEQIEELMYHLE ITYNVTLSQWERSFISFPFNINTNHIRNSLLADEGLLADYFQKMMKKIHHSVVVEFDEDF LFSEMKDHLRNVMNRLVFHVECHDLFYGEIERQYPLAYELAKIGLQELGRLLNRCVPTVE FGYLALYFELALRGNYEAGAKKEIAVICSTGHGTALIIQRQLEKVLGPDVQIAHFSEEEA ERRELNQYFAIFTTIPLKNIRPQTPMIHLTNLFNDTWLRNEWQRAKEIRSVESQNIHMTY QLLENTQGYRANIQKMVADLEAEKLVDPQFIERIFTREDQQTTIFESGIAFPHTINQALP TIILSIGVFEESLVTPEGKVDVILLLGIPEELTATVEAELLQLYDRLFTIAGDERLRNEL RKQRDVLAVKEWMQRKGIII >gi|307679191|gb|GL457056.1| GENE 102 99632 - 100117 548 161 aa, chain + ## HITS:1 COG:no KEGG:EF3308 NR:ns ## KEGG: EF3308 # Name: srlR # Def: transcriptional regulator SrlR # Organism: E.faecalis # Pathway: not_defined # 1 161 1 161 161 302 100.0 4e-81 MSFIYVFGALFLTAYFVQIAMGMKQIKHFNQNYQELRQLGKVAIGRRAGKLKAGTIILFA VDSQGKILAARKMQGVTVLAKFHPLPQYVNEDIHYMDHYHPLVQKENKLTQQAMENAREI YLRVELGNYQETQPLTPLNGAKIQWQLWKNKVQTKLKGSVE >gi|307679191|gb|GL457056.1| GENE 103 100117 - 100671 613 184 aa, chain + ## HITS:1 COG:PM1971 KEGG:ns NR:ns ## COG: PM1971 COG3730 # Protein_GI_number: 15603836 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIC # Organism: Pasteurella multocida # 1 182 2 183 184 206 55.0 2e-53 MSYITKFAEGFMHLFQTGAETFISWMTGIVPVVLMLMVAMNTLIAFLGEERVTKVAKLSA KNPITRYLVLPFLSAFMLGNPMSFTMARFLPEYYKPSYYAAQAQFCHTSNGVFPHINPGE LFVWLGIAQGIDTLGLNSMDLAIRYMFVGILMNFIGGWVTDFTTAYVCKQQGITLSKTVE IAVD >gi|307679191|gb|GL457056.1| GENE 104 100688 - 101683 1263 331 aa, chain + ## HITS:1 COG:PM1970 KEGG:ns NR:ns ## COG: PM1970 COG3732 # Protein_GI_number: 15603835 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIBC # Organism: Pasteurella multocida # 5 330 4 328 329 344 57.0 2e-94 MTYNSIKVVKGNGGYGGPLVITPTEEKHKFIYITGGGEKPAIVDKIVELTGMEAVNGFKT SIPDDEIALAIIDCGGTLRCGIYPKKGIPTINVVPTGKSGPLAQYINETIYVSAVGPKQI TLTSEEAAADTEKPTSKKTEFKYDTSKKITEQKAEQQSFVAKIGMGAGKVVATFNQSARE GVQTMINTVIPFMAFVSLLIGVIQGSGIGEFFANIMAPLAGNIVGLTIIGFICSLPFLSP LLGPGAVISQVIGTLIGVEIGKGNIPPQLALPALFAINTQNACDFIPVGLGLEEAEAETV EVGVPSVLYSRFLNGAPRVLVAWLASFGLYS >gi|307679191|gb|GL457056.1| GENE 105 101708 - 102064 479 118 aa, chain + ## HITS:1 COG:PM1969 KEGG:ns NR:ns ## COG: PM1969 COG3731 # Protein_GI_number: 15603834 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIA # Organism: Pasteurella multocida # 2 117 3 118 123 66 29.0 9e-12 MSVFTTKVQSIGPEAELFKEEKMVILFGKDAPDALADYCYNIEVQPVTEAITDKQTLVID EQTYQITAVGEVVLTNLDTLGHITIKFDGATTPELPGTLYVEEKAIPEITVGTTITIL >gi|307679191|gb|GL457056.1| GENE 106 102092 - 102769 776 225 aa, chain + ## HITS:1 COG:SPy2048 KEGG:ns NR:ns ## COG: SPy2048 COG0176 # Protein_GI_number: 15675818 # Func_class: G Carbohydrate transport and metabolism # Function: Transaldolase # Organism: Streptococcus pyogenes M1 GAS # 1 215 1 216 222 255 62.0 4e-68 MEFMLDTINLEAIRKYQKILPLAGVTSNPSIVKQAGKIDFFAQMKEIKKKIGQASLHVQV VGQTTEEMLEDAQTIVQQLGQETFIKIPVNEAGLAAIKQLKQANYRITATAIYTEFQGYL AIAAGADYLAPYYNRMENLTIDSQKVIEHLAAEIKRTNAKSKILAASFKNVAQINQACQM GAQAVTIAPELVTQGLAMPAIQKAVTDFQEDWVAVFGVETVNELA >gi|307679191|gb|GL457056.1| GENE 107 102971 - 104743 1665 590 aa, chain + ## HITS:1 COG:L180241 KEGG:ns NR:ns ## COG: L180241 COG4716 # Protein_GI_number: 15672937 # Func_class: S Function unknown # Function: Myosin-crossreactive antigen # Organism: Lactococcus lactis # 1 590 1 587 587 935 73.0 0 MRYTNGNYEAFARPRKPKGVDDKSAYIVGGGLAGLATAVFLIRDGQMKGENIHIFEELTL SGGSLDGKFIPHDGFVTRGGREMENHFECLWDLFRSVPSLEVEDASVLDEFYRLDLDDPN SSNCRIIHNRGERVPDDGQFTLSKKAQKEIVDLFMTSEDQLIGKKIEDVFGEEFFESNFW IYWCSMFAFEKWHSAIEMRRYIMRFIHHIKGLPDFTALKFTKYNQYESLVKPLLSFLTNQ GVDFQYETTINDIQVDIKGATKVARRLLLTQAGKTKEIPLTENDLVFVTNGSITESSTQG DHHTPAPITHELGGSWNLWKNLAKQSPEFGHPEVFCENLPDESWFVSATITWENFDIEPY LSRLTHRKLRTGKIVTGGIITIKDSNWMMSFAMHRQPHFKEQNDQQSITWVYGLLSNKPG NYIKKPIEQCTGQEITQELLYHLGVPEGEIERISEESATTIPVYMPFITSYFMLREPGDR PLVVPNGSKNLAFIGNFADTERDTVFTTEYSVRTAMEAVYQLLEVERGVPEVFASAYDLR VLANSVYYLSDKKKLTEMDMPFVERKMVEHFVKKFEDTYIGDILRENHLI >gi|307679191|gb|GL457056.1| GENE 108 105154 - 106140 1007 328 aa, chain + ## HITS:1 COG:no KEGG:EF3301 NR:ns ## KEGG: EF3301 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 328 1 328 328 637 99.0 0 MGRWQELQQAMSAGVEAAIDAGWDRQAVYGLVESAIKDTRFLPLEQAKTAVTELFSEVEE VGSSAYERLFRFSAYRPQEKLSLLLWQLGAVLDQHGMLQLVGPYRFSKTIAPHATFWHLL AKTVQKAYPLGLLGSFNQEKAKKIHQLRMYIDRQNITYIRDFFKQEGDTDEQALKRYVFA AKPQGMGGRKLKKSSARLHNKYPEGASYSLINKKRLTPNFHSEFILNEEGTFVTQWDVLV EDWRGRLISNPAYYQAAKNNEYQEKVLNGESFNYANRNNRTHELLDSSPPGRFDHQLRKT AKKGWLSPRIQEYDYRRERQIKCDDYSK >gi|307679191|gb|GL457056.1| GENE 109 106183 - 106278 80 31 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIKEKPAFLCSKKSLATGQNVQLAATKTAFL >gi|307679191|gb|GL457056.1| GENE 110 106388 - 107104 894 238 aa, chain + ## HITS:1 COG:lin2934 KEGG:ns NR:ns ## COG: lin2934 COG0357 # Protein_GI_number: 16801993 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division # Organism: Listeria innocua # 1 238 1 238 238 306 63.0 2e-83 MLPEEFRQLLAEKGIELTNQQMTQFDQYFHLLVEWNEKMNLTAITEEKEVYLKHFYDSVS LAFFEDFASDKAICDVGAGAGFPSIPLKIVFPSLNVTIVDSLNKRITFLTELVNQLGLVN VSLYHDRAETFGQKAEFRGAFDYVTARAVARLNVLSELCLPLVKKEGYFLALKASKSEEE INEAKPAIATLGGQFQKEVGFTLPITADERHIVVIQKKKETPKKYPRKPGLPNKQPIK >gi|307679191|gb|GL457056.1| GENE 111 107120 - 107881 992 253 aa, chain + ## HITS:1 COG:BH4058 KEGG:ns NR:ns ## COG: BH4058 COG1192 # Protein_GI_number: 15616620 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Bacillus halodurans # 1 252 1 252 253 356 70.0 2e-98 MTRIISVANQKGGVGKTTTTVNLGACLANLGKKVLLIDIDAQGNATSGMGVPKPDVAHDV YDVLVNEEPITSVVQHTSRENLDIVPATIQLAGAEIELTSMMARESRLKLAIDEVRDMYD FVLIDCPPSLGHLTINAFTASDSILIPVQCEYYALEGLSQLLNTIRLVQKHFNPELKIEG VLLTMYDARTNLGAEVVEEVRKYFREKVYDTIIPRNVRLSEAPSHGLPIIDYDIRSKGAE VYQALAKEVLENE >gi|307679191|gb|GL457056.1| GENE 112 107874 - 108764 1126 296 aa, chain + ## HITS:1 COG:lin2922 KEGG:ns NR:ns ## COG: lin2922 COG1475 # Protein_GI_number: 16801981 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 4 296 2 283 283 281 55.0 7e-76 MNKGKGLGRGIDALFQDIAKLEDVDVKNEQVTEILLNELRPNPYQPRKTFDETSLQELAN SILHSGVFQPIIVRKSAVKGYEIIAGERRFRASKLAGKEKIPAIIREFDEESMMQVAVLE NLQREDLNPLEEAEAYEMLMKNLKLTQAEVAERLGKSRPYIANYLRLLTLPDAVKAMVQK QSMSMGQARTLLGLKNKEQLLPLANRCIKDNLTVRQLEQLVAELNETQGKKGKKAKKAIK EKPIYIRESEDRLMDKFGTTVAIQEKEGKGKIEIEYLSSSDLARILDILDIHFDEE >gi|307679191|gb|GL457056.1| GENE 113 108882 - 109067 229 61 aa, chain + ## HITS:1 COG:BH4052 KEGG:ns NR:ns ## COG: BH4052 COG4481 # Protein_GI_number: 15616614 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 2 61 5 64 65 82 61.0 2e-16 MYDLGDIVEMKKPHACQANRWQIIRMGADIKSKCTNCGHIVMMPRRDFTKKLKKVIEKKA D >gi|307679191|gb|GL457056.1| GENE 114 109124 - 110239 1615 371 aa, chain + ## HITS:1 COG:SPy0006 KEGG:ns NR:ns ## COG: SPy0006 COG0012 # Protein_GI_number: 15674254 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted GTPase, probable translation factor # Organism: Streptococcus pyogenes M1 GAS # 1 371 1 371 371 552 78.0 1e-157 MALTAGIVGLPNVGKSTLFNAITKAGAEAANYPFATIDPNVGMVEVPDARLQRLTELVKP KKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDENIMREQNRDA DFVDPLADIDTINLELILADLDSINKRYTRVAKMAKAKDKEAVEELAVLDKIKPVLEEGL SARTIEFTPEEEKIVKSLFLLTTKPVLYVANVSEDEVADPDNNEYVQQVRNFATSENAEV IVVSARAEEEIAELDSEEDKAEFLEAMGIEQSGLDQLIRAAYDLLGLATYFTAGEQEVRA WTFRKGIKAPQAAGIIHSDFERGFIRAETVSYEDLDKYGNMQAAKEAGRVRLEGKDYVVQ DGDVMLFRFNV >gi|307679191|gb|GL457056.1| GENE 115 110352 - 111041 848 229 aa, chain + ## HITS:1 COG:SPy1828 KEGG:ns NR:ns ## COG: SPy1828 COG4858 # Protein_GI_number: 15675655 # Func_class: S Function unknown # Function: Uncharacterized membrane-bound protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 18 224 4 212 218 129 33.0 4e-30 MEAEALRAIVAENRQLEQNLTKRNEQYIFDLKKSLKAANLSEEELALALHGILPELVAGQ KTGKTARQLFGTVSERTEAILNKPAEVKEPAGWMIWLDNTLLLLGLLTIMLAAMSLFSKG TAQPLGLTTYILGAMAGGYVFYLMHKYVYRFDRQGGDKSKRPGWLKTTAILFGGMFLWIA VFAGSAMLPPVINPILDPMIALVIGALAFVARYFFKKKYNIQGSFMTRQ >gi|307679191|gb|GL457056.1| GENE 116 111208 - 112890 1155 560 aa, chain + ## HITS:1 COG:no KEGG:EF3294 NR:ns ## KEGG: EF3294 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 560 1 560 560 926 97.0 0 MGQQVKSWCRQHERLLIFISFLLLSGLSLYFVYFQENFLRASDFRFHQNRVEGLALAIKN NDWFPKINYFFLGGYGYASSLFYPDAYLYLPALLRVLGLSFVASMAIFVFAVNLATFSLT YYAGRLMALSKKRSYLFAILYGLSIYRMQDLFNRQALGEFLALSFFPLVLASLFLLRKGT TKCWPLLTLAMTGIGLAHFISIEMVSIWIGLYILFYWQQFFKKEVLWALAKAAGLTLLWL AFYLLPVAEQMKNQVFKVTSNPLTYISERSYPIVSLFINSLKSSVFHAKTANLGTLLFVG LVVAVVSLASKKIQDKRFIGLTLVLLLMVTTLFPWHWLNHTPLNTIQFPWRFLGILSVML AFFISQDEWGVFRKFWTVALLVFLAISNLGIYQYQSIQSQQGHLLTKAEYEQPTPFYIGA GHEYLPDEINYQELLKQKKRQLDYSAAQVTITNVRMPYGKISFDYQVVKQSAKVTVPFIY YLGYQATIQMKNQTGAKKMNLTNQGGLAALSLSGTGHVDIRYQRTKVQKIGTMMTLLSVG GFGFSRFLQQKKKHKIKEQR >gi|307679191|gb|GL457056.1| GENE 117 113048 - 114529 2225 493 aa, chain + ## HITS:1 COG:SPy2206_3 KEGG:ns NR:ns ## COG: SPy2206_3 COG0516 # Protein_GI_number: 15675939 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Streptococcus pyogenes M1 GAS # 208 493 1 286 286 465 85.0 1e-131 MSNWETKFAKKGLTFDDVLLIPAESHVLPNDVDMSVQLAKNIKLNIPLMSASMDTVTDSN MAIAMARQGGLGVVHKNMTVAQQADEVRKVKRSESGVIIDPFFLTPTNLVVDAEELMSRY RISGVPIVETMENRKLVGIITNRDMRFVTDYQIKIEEVMTKDHLVTAPVGTSLKDAEKIL QKHKIEKLPIVDEAGRLSGLITIKDIEKVIEFPNAAKDEHGRLLVAAAVGVTSDTFERAE ALLEAGADAIVIDTAHGHSAGVIRKIKEIRETFPEATLIAGNVATAEATKALYDVGVDVV KVGIGPGSICTTRVVAGVGVPQLTAIYDAASVAREYGKAIIADGGIKYSGDIVKALAAGG HAVMLGSMLAGTDESPGEFEIYQGRRFKTYRGMGSLGAMEKGSSDRYFQGSVNEANKLVP EGIEGRVAYKGSVSDIVFQLIGGLKSGMGYVGAADLKALREEAQFVQMSGNGLKESHPHD VQITKEAPNYSVQ >gi|307679191|gb|GL457056.1| GENE 118 114741 - 116012 1707 423 aa, chain - ## HITS:1 COG:SP0411 KEGG:ns NR:ns ## COG: SP0411 COG0172 # Protein_GI_number: 15900330 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 423 1 423 424 612 73.0 1e-175 MLDVKMMRQNFDEVKAKLQTRGVKEEILVEFLRLDESRRDLLVKVEEMKKYRNDVSAEIA QLKRNKEDATAKIAEMKEVGGNIKALDAEINAIDEELRGITTTLPNLPDDSVPVGAGEEE NVEVRRWSEPRTFAFEPKPHWEVAENLGILDFERGAKVAGSRFVYYKGLGARLERALYNF MLDLHVYEHGYTEMITPYIVNDTAMFGTGQFPKFKEDVFQLQDTDLTLIPTAEVPLTNYY NNEILDGKDLPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFNKVEMVKFSDAEHSYEELE KMTNNAEEILQKLGLPYRVMALSTGDMGFSAAKTYDLEVWIPAQETYREISSCSNCEDFQ ARRAMIRYRDENDKVQYAHTLNGSGLAVGRTVAAILENYQNEDGSVTVPEVLVPYMGNLT VIK >gi|307679191|gb|GL457056.1| GENE 119 116347 - 117528 1177 393 aa, chain - ## HITS:1 COG:lin2515 KEGG:ns NR:ns ## COG: lin2515 COG0642 # Protein_GI_number: 16801577 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 76 384 76 379 380 187 36.0 3e-47 MLVKPKKIEKQKRITLTSKEISELLAEAIVTIVLLLLLNVSIMFLLGQLLSENSLLAGVI WATKDAVAKELNTDLFWSWNKFVLPIFFLVDAAVLYWRLIRRYHQMQLRHIISELHYIAD GNYNHRIPFELSGDLAKVVTSINGLVDSTVAAIEDERRIEKSKDELITNVSHDIRTPLTS IIGYLGLIEDRQFHSQEDLLKYTHTAYVKAKQMKLLVDDLFEYTKVRQPSVPIHTTTFDM AQLIEQLAADFELEAKKINMQIQVKANPASLMMEGDTEKLVRVFNNLLSNALKYGKGGHH IVMEVDKVGTEAIIAVRNDGPAIPKHSLDQLFDRFYRVEESRSQETGGTGLGLAIAQSIV ALHGGYIYAKSDQKWTSFIIHLPLQRTNKKSES >gi|307679191|gb|GL457056.1| GENE 120 117518 - 118207 860 229 aa, chain - ## HITS:1 COG:lin2516 KEGG:ns NR:ns ## COG: lin2516 COG0745 # Protein_GI_number: 16801578 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 3 227 5 230 231 229 53.0 4e-60 MKILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMDG MEVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRSQ MQLTKEEPDELEVGPLMINKDSHEVKTIEGKEIQLTALEFGILYLLASHPNRVFSADEIF ERVWQQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKIDAR Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:20:14 2011 Seq name: gi|307679190|gb|GL457057.1| Enterococcus faecalis TX2141 genomic scaffold Scfld276, whole genome shotgun sequence Length of sequence - 215327 bp Number of predicted genes - 228, with homology - 211 Number of transcription units - 100, operones - 57 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 143 - 1054 662 ## EF1875 hypothetical protein 2 1 Op 2 . - CDS 1073 - 2077 898 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) 3 1 Op 3 . - CDS 2074 - 4197 994 ## EF1877 hypothetical protein 4 1 Op 4 . - CDS 4202 - 6649 1842 ## EF1878 ATP/GTP-binding protein, putative 5 1 Op 5 . - CDS 6636 - 7025 106 ## EF1879 hypothetical protein - Prom 7247 - 7306 8.6 + Prom 7001 - 7060 11.8 6 2 Tu 1 . + CDS 7089 - 7817 562 ## EF1880 hypothetical protein 7 3 Op 1 . - CDS 7824 - 8651 303 ## EF1881 hypothetical protein 8 3 Op 2 . - CDS 8725 - 9228 689 ## EF1882 hypothetical protein 9 3 Op 3 . - CDS 9241 - 9462 287 ## EF1883 hypothetical protein - Prom 9541 - 9600 4.5 + Prom 9737 - 9796 2.0 10 4 Tu 1 . + CDS 9859 - 11109 968 ## COG3547 Transposase and inactivated derivatives 11 5 Op 1 . - CDS 11241 - 11339 149 ## 12 5 Op 2 . - CDS 11372 - 12556 942 ## COG2946 Putative phage replication protein RstA - Prom 12702 - 12761 2.5 - Term 12841 - 12882 6.5 13 6 Op 1 . - CDS 12905 - 13072 287 ## 14 6 Op 2 . - CDS 13065 - 13142 68 ## - Prom 13193 - 13252 2.0 - Term 13243 - 13293 2.1 15 7 Op 1 . - CDS 13300 - 13740 513 ## EF1889 hypothetical protein - Prom 13766 - 13825 2.1 - Term 13758 - 13803 -0.6 16 7 Op 2 . - CDS 13827 - 14183 350 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 17 8 Op 1 . - CDS 14285 - 15091 195 ## BpOF4_20219 putative COX1/OXI3 intron 2 protein 18 8 Op 2 . - CDS 14944 - 16101 135 ## COG3344 Retron-type reverse transcriptase - Prom 16333 - 16392 4.3 19 9 Op 1 . - CDS 16752 - 17768 588 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 20 9 Op 2 . - CDS 17838 - 18182 397 ## EF1893 hypothetical protein 21 9 Op 3 . - CDS 18192 - 18566 514 ## EF1894 hypothetical protein 22 9 Op 4 . - CDS 18579 - 18893 450 ## EF1895 hypothetical protein - Term 18923 - 18966 5.1 23 10 Tu 1 . - CDS 19006 - 22149 2853 ## COG4932 Predicted outer membrane protein - Prom 22227 - 22286 6.7 - Term 22259 - 22297 4.5 24 11 Tu 1 . - CDS 22313 - 22975 332 ## EF1897 hypothetical protein - Term 23271 - 23311 6.1 25 12 Op 1 33/0.000 - CDS 23346 - 23741 654 ## PROTEIN SUPPORTED gi|227519245|ref|ZP_03949294.1| 50S ribosomal protein L19 - Prom 23775 - 23834 5.3 26 12 Op 2 30/0.000 - CDS 23837 - 24577 900 ## COG0336 tRNA-(guanine-N1)-methyltransferase 27 12 Op 3 . - CDS 24567 - 25091 707 ## COG0806 RimM protein, required for 16S rRNA processing - Prom 25120 - 25179 7.3 - Term 25150 - 25192 7.0 28 13 Tu 1 . - CDS 25199 - 26560 1587 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family - Prom 26621 - 26680 9.0 + Prom 26606 - 26665 8.2 29 14 Tu 1 . + CDS 26757 - 27131 436 ## EF1902 glyoxylase family protein + Term 27138 - 27179 -0.1 + Prom 27272 - 27331 8.1 30 15 Tu 1 . + CDS 27362 - 27961 747 ## COG0398 Uncharacterized conserved protein + Term 27981 - 28034 5.5 + Prom 27963 - 28022 4.2 31 16 Tu 1 . + CDS 28062 - 29864 1308 ## COG0584 Glycerophosphoryl diester phosphodiesterase 32 17 Op 1 . - CDS 29955 - 30641 910 ## COG0670 Integral membrane protein, interacts with FtsH 33 17 Op 2 . - CDS 30634 - 31119 653 ## COG2030 Acyl dehydratase - Prom 31142 - 31201 6.6 - Term 31239 - 31299 5.0 34 18 Tu 1 . - CDS 31317 - 32654 1552 ## COG0773 UDP-N-acetylmuramate-alanine ligase - Prom 32747 - 32806 8.2 - Term 32757 - 32803 5.7 35 19 Tu 1 . - CDS 32809 - 33753 1040 ## EF1909 hypothetical protein - Prom 33779 - 33838 6.2 - Term 33827 - 33878 7.1 36 20 Tu 1 . - CDS 33880 - 34839 1110 ## COG4129 Predicted membrane protein - Prom 34878 - 34937 6.2 + Prom 34794 - 34853 4.8 37 21 Tu 1 . + CDS 34942 - 35553 599 ## COG4129 Predicted membrane protein + Term 35555 - 35604 11.4 - Term 35543 - 35592 11.4 38 22 Op 1 . - CDS 35594 - 36475 1102 ## COG1940 Transcriptional regulator/sugar kinase 39 22 Op 2 . - CDS 36478 - 36780 378 ## COG0759 Uncharacterized conserved protein - Prom 36921 - 36980 10.0 + Prom 36878 - 36937 5.0 40 23 Tu 1 . + CDS 36958 - 37110 231 ## 41 24 Op 1 4/0.000 - CDS 37127 - 37708 756 ## COG0218 Predicted GTPase - Prom 37740 - 37799 2.0 - Term 37738 - 37803 13.3 42 24 Op 2 . - CDS 37806 - 39059 267 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 - Prom 39098 - 39157 2.9 + Prom 39141 - 39200 8.2 43 25 Tu 1 . + CDS 39251 - 40279 1283 ## COG2706 3-carboxymuconate cyclase + Term 40308 - 40360 13.1 - Term 40296 - 40347 12.1 44 26 Op 1 . - CDS 40370 - 40846 348 ## EF1919 acetyltransferase 45 26 Op 2 . - CDS 40858 - 42231 1413 ## COG3069 C4-dicarboxylate transporter 46 26 Op 3 . - CDS 42248 - 43168 1086 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase - Prom 43309 - 43368 7.6 + Prom 43259 - 43318 9.6 47 27 Op 1 . + CDS 43351 - 45261 1528 ## COG0524 Sugar kinases, ribokinase family + Prom 45301 - 45360 8.2 48 27 Op 2 . + CDS 45380 - 46888 1046 ## EF1923 hypothetical protein + Term 47106 - 47155 10.7 - Term 46926 - 46995 20.0 49 28 Op 1 . - CDS 47207 - 48049 791 ## EF1925 hypothetical protein 50 28 Op 2 . - CDS 48042 - 48581 444 ## COG4915 5-bromo-4-chloroindolyl phosphate hydrolysis protein - Prom 48602 - 48661 9.9 - Term 48759 - 48828 8.0 51 29 Op 1 4/0.000 - CDS 48854 - 49573 1155 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) 52 29 Op 2 5/0.000 - CDS 49581 - 51410 2158 ## COG0578 Glycerol-3-phosphate dehydrogenase 53 29 Op 3 . - CDS 51431 - 52936 1812 ## COG0554 Glycerol kinase - Prom 53021 - 53080 8.1 - Term 53156 - 53206 7.5 54 30 Op 1 . - CDS 53213 - 54679 1142 ## EF1931 hypothetical protein 55 30 Op 2 . - CDS 54669 - 56003 1260 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases - Prom 56211 - 56270 10.5 + Prom 56045 - 56104 7.6 56 31 Op 1 . + CDS 56183 - 56539 431 ## EF1933 hypothetical protein 57 31 Op 2 . + CDS 56573 - 56734 215 ## EF1934 hypothetical protein + Term 56738 - 56793 16.1 - Term 56798 - 56831 4.5 58 32 Op 1 . - CDS 56977 - 57417 714 ## EF1936 hypothetical protein 59 32 Op 2 . - CDS 57487 - 58023 403 ## PROTEIN SUPPORTED gi|227385040|ref|ZP_03868434.1| acetyltransferase, ribosomal protein N-acetylase - Term 58035 - 58080 8.3 60 32 Op 3 . - CDS 58093 - 60798 3461 ## COG0474 Cation transport ATPase - Prom 61042 - 61101 9.3 - Term 60989 - 61038 4.3 61 33 Tu 1 . - CDS 61116 - 61766 600 ## EF1939 hypothetical protein + Prom 61699 - 61758 8.4 62 34 Op 1 . + CDS 61855 - 62520 622 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 63 34 Op 2 . + CDS 62592 - 62987 501 ## EF1941 hypothetical protein + Prom 63017 - 63076 5.0 64 35 Tu 1 . + CDS 63097 - 64278 1074 ## COG0477 Permeases of the major facilitator superfamily + Term 64287 - 64325 7.2 - Term 64278 - 64309 3.1 65 36 Tu 1 . - CDS 64316 - 66151 1560 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily - Prom 66179 - 66238 7.2 + Prom 66033 - 66092 7.0 66 37 Op 1 . + CDS 66256 - 66357 113 ## 67 37 Op 2 . + CDS 66360 - 66509 247 ## EF1947 hypothetical protein + Term 66564 - 66604 3.4 + Prom 66570 - 66629 5.4 68 38 Tu 1 . + CDS 66660 - 67046 299 ## COG5646 Uncharacterized conserved protein - Term 66986 - 67039 2.0 69 39 Op 1 . - CDS 67136 - 67486 392 ## COG4898 Uncharacterized protein conserved in bacteria 70 39 Op 2 3/0.000 - CDS 67560 - 68564 1238 ## COG2222 Predicted phosphosugar isomerases 71 39 Op 3 3/0.000 - CDS 68558 - 69634 905 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains 72 39 Op 4 13/0.000 - CDS 69645 - 70475 1000 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 73 39 Op 5 13/0.000 - CDS 70459 - 71250 845 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 74 39 Op 6 . - CDS 71266 - 71466 180 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB - Prom 71504 - 71563 2.6 75 40 Op 1 9/0.000 - CDS 71611 - 71736 234 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 76 40 Op 2 3/0.000 - CDS 71748 - 72167 508 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA - Term 72191 - 72225 3.2 77 40 Op 3 . - CDS 72239 - 75010 2287 ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain - Prom 75054 - 75113 7.3 - Term 75348 - 75393 4.3 78 41 Op 1 . - CDS 75581 - 76942 1174 ## COG0232 dGTP triphosphohydrolase 79 41 Op 2 . - CDS 76959 - 77783 667 ## EF1959 hypothetical protein - Prom 77879 - 77938 11.7 - Term 78072 - 78111 3.2 80 42 Tu 1 . - CDS 78137 - 79435 1740 ## COG0148 Enolase - Prom 79483 - 79542 5.1 81 43 Op 1 13/0.000 - CDS 79567 - 80322 918 ## COG0149 Triosephosphate isomerase 82 43 Op 2 26/0.000 - CDS 80371 - 81564 1521 ## COG0126 3-phosphoglycerate kinase - Prom 81588 - 81647 3.1 - Term 81607 - 81643 6.3 83 43 Op 3 5/0.000 - CDS 81691 - 82692 1331 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 84 43 Op 4 . - CDS 82732 - 83769 1026 ## COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain - Prom 83902 - 83961 7.2 - Term 84130 - 84177 11.0 85 44 Tu 1 . - CDS 84189 - 85067 926 ## COG1284 Uncharacterized conserved protein - Prom 85109 - 85168 6.2 86 45 Op 1 2/0.067 - CDS 85210 - 85779 830 ## COG4475 Uncharacterized protein conserved in bacteria 87 45 Op 2 3/0.000 - CDS 85776 - 86282 674 ## COG4720 Predicted membrane protein 88 45 Op 3 . - CDS 86266 - 87081 694 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase - Prom 87102 - 87161 5.1 - Term 87192 - 87233 8.1 89 46 Op 1 13/0.000 - CDS 87252 - 89021 2360 ## COG0173 Aspartyl-tRNA synthetase 90 46 Op 2 . - CDS 89039 - 90340 1711 ## COG0124 Histidyl-tRNA synthetase - Prom 90440 - 90499 4.4 91 47 Op 1 7/0.000 - CDS 90698 - 91144 596 ## COG1490 D-Tyr-tRNAtyr deacylase 92 47 Op 2 . - CDS 91168 - 93381 2574 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases - Prom 93436 - 93495 8.0 - Term 93553 - 93585 -0.0 93 48 Op 1 9/0.000 - CDS 93596 - 94348 698 ## COG1385 Uncharacterized protein conserved in bacteria 94 48 Op 2 . - CDS 94350 - 95297 1600 ## PROTEIN SUPPORTED gi|227519318|ref|ZP_03949367.1| ribosomal protein L11 methyltransferase 95 48 Op 3 . - CDS 95313 - 95798 720 ## EF1977 hypothetical protein 96 48 Op 4 . - CDS 95755 - 96432 836 ## COG2094 3-methyladenine DNA glycosylase - Prom 96531 - 96590 6.8 + Prom 96479 - 96538 4.2 97 49 Op 1 . + CDS 96561 - 97838 1499 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase + Prom 97843 - 97902 1.7 98 49 Op 2 . + CDS 97922 - 98125 95 ## + Term 98127 - 98158 1.1 99 49 Op 3 . + CDS 98166 - 98444 289 ## EF1980 hypothetical protein + Term 98501 - 98554 6.8 + Prom 98665 - 98724 7.7 100 50 Tu 1 . + CDS 98760 - 99233 688 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins + Term 99244 - 99297 18.1 - Term 99292 - 99335 13.0 101 51 Op 1 7/0.000 - CDS 99345 - 100532 1536 ## COG0282 Acetate kinase 102 51 Op 2 . - CDS 100557 - 101528 1015 ## COG0827 Adenine-specific DNA methylase - Prom 101607 - 101666 8.2 - Term 101614 - 101662 0.3 103 52 Op 1 . - CDS 101693 - 102046 346 ## EF1985 hypothetical protein 104 52 Op 2 . - CDS 102046 - 102480 382 ## COG4940 Competence protein ComGF 105 52 Op 3 . - CDS 102470 - 102871 116 ## EF1987 hypothetical protein + Prom 103007 - 103066 7.0 106 53 Tu 1 . + CDS 103174 - 103299 159 ## + Term 103451 - 103497 6.1 107 54 Tu 1 . - CDS 103596 - 104537 451 ## COG0276 Protoheme ferro-lyase (ferrochelatase) - TRNA 104567 - 104640 68.6 # Met CAT 0 0 - TRNA 105091 - 105164 20.2 # Pseudo CAT 0 0 - Term 105244 - 105277 3.1 108 55 Op 1 . - CDS 105281 - 105505 183 ## EF1990 hypothetical protein - Prom 105543 - 105602 9.0 - Term 105548 - 105593 8.7 109 55 Op 2 . - CDS 105604 - 105804 321 ## COG1278 Cold shock proteins - Prom 105921 - 105980 9.5 - Term 106573 - 106614 4.8 110 56 Op 1 . - CDS 106641 - 107942 1499 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) 111 56 Op 2 . - CDS 107955 - 108335 261 ## SEQ_0188 phage holin 112 56 Op 3 . - CDS 108346 - 108468 276 ## gi|256960151|ref|ZP_05564322.1| predicted protein 113 56 Op 4 . - CDS 108470 - 108865 607 ## MPTP_1399 hypothetical protein 114 56 Op 5 . - CDS 108884 - 109336 507 ## gi|256617888|ref|ZP_05474734.1| predicted protein 115 56 Op 6 . - CDS 109353 - 110084 825 ## gi|256617887|ref|ZP_05474733.1| predicted protein 116 56 Op 7 . - CDS 110099 - 111544 1236 ## lp_0675 prophage Lp1 protein 52, endolysin 117 56 Op 8 . - CDS 111544 - 112266 533 ## PEPE_0798 hypothetical protein 118 56 Op 9 . - CDS 112263 - 116717 4248 ## COG5283 Phage-related tail protein 119 56 Op 10 . - CDS 116704 - 117009 336 ## gi|256853520|ref|ZP_05558886.1| predicted protein 120 56 Op 11 . - CDS 117078 - 117476 515 ## gi|256853521|ref|ZP_05558887.1| predicted protein - Term 117485 - 117520 4.2 121 57 Op 1 . - CDS 117539 - 117847 526 ## gi|256853522|ref|ZP_05558888.1| predicted protein 122 57 Op 2 . - CDS 117850 - 118455 688 ## LJ1428 Lj928 prophage protein 123 57 Op 3 . - CDS 118474 - 118866 559 ## LJ1429 Lj928 prophage protein 124 57 Op 4 . - CDS 118863 - 119201 437 ## LACR_1768 hypothetical protein 125 57 Op 5 . - CDS 119198 - 119473 174 ## gi|256853526|ref|ZP_05558892.1| predicted protein 126 57 Op 6 . - CDS 119470 - 119802 296 ## gi|256617876|ref|ZP_05474722.1| predicted protein 127 57 Op 7 . - CDS 119873 - 120769 1197 ## MPTP_1414 major capsid protein 128 57 Op 8 . - CDS 120783 - 121418 697 ## gi|256617874|ref|ZP_05474720.1| predicted protein - Prom 121467 - 121526 3.5 129 58 Op 1 . - CDS 121541 - 122467 710 ## COG5585 NAD+--asparagine ADP-ribosyltransferase 130 58 Op 2 . - CDS 122460 - 123944 1331 ## BH3532 hypothetical protein 131 58 Op 3 3/0.000 - CDS 123944 - 125227 785 ## COG1783 Phage terminase large subunit 132 58 Op 4 . - CDS 125208 - 125642 505 ## COG3728 Phage terminase, small subunit 133 58 Op 5 . - CDS 125674 - 125904 144 ## EF2021 hypothetical protein - Prom 125934 - 125993 6.6 + Prom 126580 - 126639 10.7 134 59 Tu 1 . + CDS 126667 - 127338 474 ## gi|315143445|gb|EFT87461.1| hypothetical protein HMPREF9495_02786 + Term 127537 - 127576 2.4 135 60 Tu 1 . - CDS 127331 - 127951 133 ## gi|256853536|ref|ZP_05558902.1| predicted protein - Prom 128057 - 128116 6.3 136 61 Tu 1 . + CDS 128320 - 128403 67 ## 137 62 Tu 1 . - CDS 128773 - 129189 241 ## EF2024 ArpU family transcriptional regulator - Prom 129287 - 129346 5.3 138 63 Tu 1 . - CDS 129456 - 129542 68 ## - Prom 129608 - 129667 7.3 - Term 129773 - 129811 0.4 139 64 Op 1 . - CDS 129920 - 130036 61 ## 140 64 Op 2 . - CDS 130096 - 130521 376 ## COG4570 Holliday junction resolvase 141 64 Op 3 . - CDS 130539 - 130838 454 ## SH1788 hypothetical protein 142 64 Op 4 . - CDS 130839 - 131141 399 ## gi|256853542|ref|ZP_05558908.1| predicted protein 143 64 Op 5 . - CDS 131145 - 132107 703 ## EF2130 DnaD domain-containing protein 144 64 Op 6 3/0.000 - CDS 132121 - 133011 1049 ## COG3723 Recombinational DNA repair protein (RecE pathway) 145 64 Op 7 . - CDS 133014 - 133955 995 ## COG5377 Phage-related protein, predicted endonuclease 146 64 Op 8 . - CDS 133952 - 134053 166 ## 147 64 Op 9 . - CDS 134053 - 134280 239 ## EF2843 hypothetical protein 148 64 Op 10 . - CDS 134280 - 134603 392 ## gi|257090308|ref|ZP_05584669.1| predicted protein 149 64 Op 11 . - CDS 134647 - 134832 293 ## gi|229545381|ref|ZP_04434106.1| hypothetical protein HMPREF0349_0598 150 64 Op 12 . - CDS 134823 - 135017 192 ## gi|229545380|ref|ZP_04434105.1| hypothetical protein HMPREF0349_0597 - Prom 135229 - 135288 8.0 + Prom 134975 - 135034 7.0 151 65 Tu 1 . + CDS 135070 - 135252 183 ## EF2036 hypothetical protein + Term 135253 - 135283 1.3 - Term 135204 - 135247 -0.3 152 66 Op 1 . - CDS 135292 - 136017 561 ## COG3646 Uncharacterized phage-encoded protein 153 66 Op 2 . - CDS 136056 - 136367 236 ## EF2038 hypothetical protein 154 66 Op 3 . - CDS 136379 - 136546 171 ## EF2849 hypothetical protein - Prom 136759 - 136818 9.8 + Prom 136525 - 136584 7.2 155 67 Tu 1 . + CDS 136627 - 137037 152 ## gi|307268345|ref|ZP_07549726.1| hypothetical protein HMPREF9498_00485 + Term 137082 - 137126 5.3 156 68 Op 1 . - CDS 136964 - 137161 98 ## 157 68 Op 2 . - CDS 137174 - 137356 302 ## gi|256853556|ref|ZP_05558921.1| predicted protein - Prom 137471 - 137530 5.1 + Prom 137391 - 137450 9.6 158 69 Op 1 . + CDS 137648 - 137983 280 ## COG1396 Predicted transcriptional regulators 159 69 Op 2 . + CDS 138002 - 138346 247 ## EF2853 hypothetical protein + Term 138352 - 138382 -0.5 160 69 Op 3 . + CDS 138404 - 139132 443 ## COG1226 Kef-type K+ transport systems, predicted NAD-binding component + Prom 139140 - 139199 3.7 161 69 Op 4 . + CDS 139232 - 140380 453 ## COG0582 Integrase - Term 140417 - 140462 -0.5 162 70 Op 1 . - CDS 140660 - 140851 232 ## gi|257087243|ref|ZP_05581604.1| predicted protein 163 70 Op 2 6/0.000 - CDS 140848 - 141123 431 ## COG4537 Competence protein ComGC 164 70 Op 3 24/0.000 - CDS 141123 - 142169 827 ## COG1459 Type II secretory pathway, component PulF 165 70 Op 4 . - CDS 142126 - 143094 684 ## COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB - Prom 143236 - 143295 6.6 - Term 143140 - 143178 6.2 166 71 Tu 1 . - CDS 143334 - 144662 1377 ## COG0531 Amino acid transporters - Prom 144767 - 144826 7.5 - Term 144894 - 144947 8.0 167 72 Tu 1 . - CDS 144952 - 146025 1125 ## COG0820 Predicted Fe-S-cluster redox enzyme - Prom 146056 - 146115 7.6 - Term 146093 - 146149 11.2 168 73 Op 1 36/0.000 - CDS 146150 - 147979 1603 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 169 73 Op 2 1/0.133 - CDS 147969 - 148718 984 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component - Prom 148743 - 148802 6.5 - Term 148773 - 148826 12.1 170 74 Op 1 3/0.000 - CDS 148836 - 149537 905 ## COG2188 Transcriptional regulators - Prom 149584 - 149643 13.3 - Term 149614 - 149660 9.5 171 74 Op 2 . - CDS 149668 - 152091 2591 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins - Prom 152112 - 152171 4.8 - Term 152289 - 152342 8.4 172 75 Op 1 . - CDS 152405 - 153616 1519 ## COG1252 NADH dehydrogenase, FAD-containing subunit 173 75 Op 2 . - CDS 153645 - 154550 764 ## COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase - Prom 154656 - 154715 3.0 174 76 Tu 1 . + CDS 154672 - 155652 1021 ## COG0142 Geranylgeranyl pyrophosphate synthase + Term 155687 - 155744 9.6 - Term 155681 - 155726 6.5 175 77 Op 1 14/0.000 - CDS 155732 - 157495 234 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 176 77 Op 2 5/0.000 - CDS 157495 - 159228 173 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 177 77 Op 3 31/0.000 - CDS 159233 - 160246 1039 ## COG1294 Cytochrome bd-type quinol oxidase, subunit 2 178 77 Op 4 . - CDS 160243 - 161661 1465 ## COG1271 Cytochrome bd-type quinol oxidase, subunit 1 179 77 Op 5 . - CDS 161663 - 161725 91 ## - Prom 161753 - 161812 5.1 - Term 161746 - 161780 0.4 180 77 Op 6 . - CDS 161821 - 161919 72 ## - Prom 162138 - 162197 7.0 + Prom 162126 - 162185 6.4 181 78 Tu 1 . + CDS 162255 - 162551 81 ## SDEG_1227 hypothetical protein + Term 162722 - 162766 9.1 - Term 162716 - 162749 4.7 182 79 Op 1 . - CDS 162756 - 163619 827 ## COG3708 Uncharacterized protein conserved in bacteria - Prom 163639 - 163698 3.3 183 79 Op 2 . - CDS 163704 - 166004 2208 ## COG0550 Topoisomerase IA 184 79 Op 3 . - CDS 165916 - 166281 316 ## COG4699 Uncharacterized protein conserved in bacteria - Prom 166305 - 166364 4.7 185 79 Op 4 . - CDS 166379 - 166948 707 ## COG1309 Transcriptional regulator - Prom 167018 - 167077 5.9 + Prom 166987 - 167046 8.3 186 80 Op 1 3/0.000 + CDS 167081 - 167596 615 ## COG1881 Phospholipid-binding protein 187 80 Op 2 . + CDS 167613 - 168845 1160 ## COG0477 Permeases of the major facilitator superfamily - Term 168928 - 168986 13.1 188 81 Tu 1 . - CDS 169032 - 170156 1357 ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain - Prom 170222 - 170281 5.9 - Term 170319 - 170375 11.3 189 82 Op 1 . - CDS 170382 - 170726 437 ## EF2071 hypothetical protein 190 82 Op 2 2/0.067 - CDS 170794 - 171939 1240 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes - Prom 171970 - 172029 4.4 - Term 172028 - 172079 9.4 191 83 Tu 1 . - CDS 172096 - 173070 1192 ## COG0462 Phosphoribosylpyrophosphate synthetase - Prom 173244 - 173303 7.0 + Prom 173197 - 173256 6.7 192 84 Op 1 42/0.000 + CDS 173283 - 174032 189 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 193 84 Op 2 12/0.000 + CDS 174029 - 174898 988 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 194 84 Op 3 . + CDS 174885 - 175811 1313 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin + Term 175820 - 175877 17.0 - Term 175807 - 175864 17.0 195 85 Op 1 . - CDS 175866 - 177404 1692 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 196 85 Op 2 . - CDS 177552 - 177659 121 ## - Prom 177679 - 177738 3.3 - Term 177722 - 177764 4.0 197 86 Op 1 . - CDS 177774 - 178967 1793 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase 198 86 Op 2 22/0.000 - CDS 178982 - 179815 1064 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen 199 86 Op 3 32/0.000 - CDS 179834 - 180514 894 ## COG2011 ABC-type metal ion transport system, permease component 200 86 Op 4 . - CDS 180533 - 181603 1153 ## COG1135 ABC-type metal ion transport system, ATPase component - Prom 181628 - 181687 2.1 201 87 Tu 1 . + CDS 181708 - 181845 59 ## 202 88 Tu 1 . - CDS 182124 - 182195 89 ## + Prom 182534 - 182593 3.2 203 89 Tu 1 . + CDS 182698 - 182862 78 ## gi|315143352|gb|EFT87368.1| hypothetical protein HMPREF9495_02850 + Term 182969 - 183035 30.0 + TRNA 182951 - 183023 79.5 # Thr GGT 0 0 + Prom 182952 - 183011 78.1 204 90 Op 1 . + CDS 183181 - 184671 914 ## EF2146 hypothetical protein + Prom 184795 - 184854 6.2 205 90 Op 2 . + CDS 184885 - 185064 168 ## EF2147 hypothetical protein + Term 185119 - 185159 8.1 - Term 185107 - 185147 8.1 206 91 Op 1 . - CDS 185152 - 186117 1036 ## EF2148 hypothetical protein - Term 186208 - 186236 -0.9 207 91 Op 2 . - CDS 186293 - 186583 485 ## EF2149 hypothetical protein 208 91 Op 3 . - CDS 186631 - 187911 1451 ## COG2348 Uncharacterized protein involved in methicillin resistance - Prom 187984 - 188043 7.7 - Term 188078 - 188131 15.1 209 92 Tu 1 . - CDS 188180 - 189988 2136 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains - Prom 190048 - 190107 5.4 - Term 190327 - 190378 6.1 210 93 Op 1 34/0.000 - CDS 190431 - 191264 906 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 211 93 Op 2 3/0.000 - CDS 191261 - 192967 278 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P - Prom 193000 - 193059 1.9 212 93 Op 3 . - CDS 193068 - 193619 490 ## COG4720 Predicted membrane protein - Prom 193663 - 193722 7.8 - Term 193783 - 193838 17.6 213 94 Op 1 6/0.000 - CDS 193849 - 195204 1877 ## COG1109 Phosphomannomutase 214 94 Op 2 7/0.000 - CDS 195197 - 196360 1373 ## COG4856 Uncharacterized protein conserved in bacteria 215 94 Op 3 1/0.133 - CDS 196357 - 197241 994 ## COG1624 Uncharacterized conserved protein - Prom 197270 - 197329 6.4 - Term 197383 - 197421 6.0 216 95 Tu 1 . - CDS 197438 - 201127 3915 ## COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit - Prom 201188 - 201247 7.8 - Term 201344 - 201395 14.5 217 96 Op 1 5/0.000 - CDS 201427 - 202767 1508 ## COG0174 Glutamine synthetase 218 96 Op 2 . - CDS 202810 - 203193 444 ## COG0789 Predicted transcriptional regulators - Prom 203215 - 203274 7.6 - Term 203334 - 203382 8.7 219 97 Op 1 2/0.067 - CDS 203396 - 204637 583 ## PROTEIN SUPPORTED gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 220 97 Op 2 . - CDS 204641 - 205570 847 ## COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase 221 97 Op 3 . - CDS 205571 - 206317 673 ## COG0584 Glycerophosphoryl diester phosphodiesterase - Prom 206360 - 206419 3.0 - Term 206377 - 206426 15.1 222 98 Tu 1 . - CDS 206474 - 207424 1041 ## COG0451 Nucleoside-diphosphate-sugar epimerases - Prom 207604 - 207663 10.9 + Prom 207467 - 207526 7.5 223 99 Tu 1 . + CDS 207636 - 209183 582 ## MPTP_0537 repeat unit transporter + Term 209189 - 209254 6.3 224 100 Op 1 . - CDS 209580 - 210470 686 ## gi|315143374|gb|EFT87390.1| hypothetical protein HMPREF9495_02874 225 100 Op 2 . - CDS 210467 - 211927 568 ## SPCG_1353 hypothetical protein 226 100 Op 3 12/0.000 - CDS 211955 - 212932 887 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 227 100 Op 4 . - CDS 212934 - 213992 1010 ## COG0451 Nucleoside-diphosphate-sugar epimerases 228 100 Op 5 . - CDS 214005 - 214709 209 ## PROTEIN SUPPORTED gi|163764767|ref|ZP_02171821.1| ribosomal protein L15 - Prom 214807 - 214866 4.3 Predicted protein(s) >gi|307679190|gb|GL457057.1| GENE 1 143 - 1054 662 303 aa, chain - ## HITS:1 COG:no KEGG:EF1875 NR:ns ## KEGG: EF1875 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 303 1 303 303 485 99.0 1e-135 MKIKIERIQKEKMSKKKKERTISVGKHRKMVLALWLLLSCSLAFGIYKNFTAIDQHTTHV KMVVKEKVINTSGVESFTKNFVKEYFSWKNNKEVIEKRMSNLGQYLTEEGLALSQDMVRV DIPTSSEVNSVKILDVEKRSKDFVVSFLVDQKITEGKKSEQISSAYRVKIFEDEKENHIV TSLPTMISKPGKAKYEVKQVESDSDIDAKTTQEITEFLETFFKLYPTASEKELEYYSENE SMSQVSSDLRFVEITNPIYLEKDGSVQVKIVVKYLNEIEKVTNSFQYNLLLNKEENWKII NGE >gi|307679190|gb|GL457057.1| GENE 2 1073 - 2077 898 334 aa, chain - ## HITS:1 COG:BS_yddH_2 KEGG:ns NR:ns ## COG: BS_yddH_2 COG0791 # Protein_GI_number: 16077564 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Bacillus subtilis # 215 332 5 122 124 122 48.0 8e-28 MNLKELSVISLTMLMLSFMGILMCVSLLFGEDSEGSGTSGISPGGNSVSEEVLKHRSMVE KYAKESDILDYVPILLAIIQVESGGTMEDVMQSSESAGLPPNSLSTEASIKQGCIYFASL VKSSKELGCDQDSIIQAYNYGGGYLNYVAKNGKKHSFTLAESFSKEKSGGQKVDYPNPIA IKENGGWRYNYGNMFYCLLVKQYLTTTQFDDKTVQGIFDEAFKYEGTAYVFGGSSPATGF DCSGLTQWCYAKVGLKLPRVAQDQYDVMTHIDLKDAKPGDLIFFHSTYDAGTYVTHVGIY AGENRMFHAGNPVGWTNLTESYWQQHLIGAGRYN >gi|307679190|gb|GL457057.1| GENE 3 2074 - 4197 994 707 aa, chain - ## HITS:1 COG:no KEGG:EF1877 NR:ns ## KEGG: EF1877 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 707 1 707 707 1335 99.0 0 MKKKLFRIVGIVFISILTLIVLLSLVGTVAEATGLVDDTVESGNLYSKYSLNNYQLDFFV DSSWDWLPWNWGDGLGKSVMYGLYAITNFIWTVSLYLSNATGYVVQEAYKLDFISDTAES IGKNIQTLADITENGLQTSGFYFGFLLLMILALGVYVAYTGLLKRETTKAVRAVINFVMI FLLSGSFIAYAPTYITKINDFSSDVSEAALTLGTEIVVPNSESQGKDSVDLIRDSLFSIQ VQQPWLLLQFDDSNIEEIGEDRVNKILSVSPDENKGKDREEAVKAEIEDNDNANLSITKT MNRLGIVVFLVLFNIGISFFVFLLTGIMLFSQILFIIFAMFLPISFLLSMLPTYESLGKM AIIRLFNTIMMRAGVTLVITTAFSISTMFFNISATYPFFMVAFLQIVTFAGIYFKLGDIM SMFNLQSNDSQSMGRRVMRRPQMLMNRKLRQLNRNVGRTLAFGGAAAVGNKLAKEQSKPK FKPSDSSLRKNSRLPNDREVSSDSAKENPISNNKKQSRMNLTGRKIGKVLDTQALVKDKA KQVKDQVRNTPTNLKYILHKGLEKTKKAPKEFKRGLVQEKADREKLRDKQRQRRDEKMDE KRKNLGEVTDRHGKRRSNVSIKEDPKPQKDRILKNELPKRIVMVKPNSEVRRRLVKQNLV ARENNQLLSKKNSFQQVKQRSTLPKRANQKVQRIMKARPKPKSGDKK >gi|307679190|gb|GL457057.1| GENE 4 4202 - 6649 1842 815 aa, chain - ## HITS:1 COG:no KEGG:EF1878 NR:ns ## KEGG: EF1878 # Name: not_defined # Def: ATP/GTP-binding protein, putative # Organism: E.faecalis # Pathway: not_defined # 1 815 1 815 815 1588 100.0 0 MYPIKYVENNLVFNQEGECFAYYELVPYNYSFLSPEQKYQVHDNFRQLIAQNREGKIHAL QIATESSIRATQERSKKEITGRLKEVAKQRIDLQTDALVSMIGDSQIDYRFFIGFKLIAT DEEVNLKSLKKSFLSGLQEFVYGVNHHLMGDFVSLSNEEIRRYTKLEKLMESKLARRFKV RRVTPSDLTYLIEHIYGEKGTPFEEYEFQLPKKKLKSETLVKRYDLLHPSRCLIEENPRY LRMEHENHESYVAYLTINTIVGEMEFPSSELFYYQQQQFTFPIDTSMNVEIVTNKKALAT VRNKKKELKDLDNHAYQSDNETNSNVLDALDSVNELETTLDQSKESMYKLSYVVRVSAES VDELKRRCDEVFDFYDDTNVKLVRPFGDMMGLHEEFLPSSKRYMNDYIQYVTSDFLAGLG FGATQKLGELEGIYFGYNVDTGRNVYLKPALASQGVKGSVTNALAAAFLGSLGGGKSFSN NLLVYYAVLFGGQAVIVDPKGERGGWKENLPEIADEINILNLTSKPENQGLLDPYVIMKK KKDSESLAIDILTFLTGISSRDGEKFPVLRKAIRTVTQSDQRGLLQVINELRKENSPVAE NIADHIESFTDYDFAHLLFSDGSITQSISLDKQLNIIQVADLVLPDAETTFEEYTTMELL SVSMLIVISTFALDFIHSNREIFKIVDLDEAWSFLQVAQGKTLSNKLVRAGRAMNAGVYF VTQNSDDLLDERLKNNIGLKFAFRSTDIHEIKKTLEFFGLDQEDESNQKRLRDLENGQCL MQDLYGRVGVVQVHPVFEELFHAFDTRPPVQERME >gi|307679190|gb|GL457057.1| GENE 5 6636 - 7025 106 129 aa, chain - ## HITS:1 COG:no KEGG:EF1879 NR:ns ## KEGG: EF1879 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 129 1 129 129 235 100.0 5e-61 MKKIKSYTSIWAVEKVIYAINDFQLPFPVTFNQMAWFVLSLLFVIVFAHVPPLSMIEGAF LKYLGIPVVVTWFMSQKTFDGKKPLGFLRSFLSYHLRFKVTFAGKKVKEQKKRWDEPITL VRSVNYVPD >gi|307679190|gb|GL457057.1| GENE 6 7089 - 7817 562 242 aa, chain + ## HITS:1 COG:no KEGG:EF1880 NR:ns ## KEGG: EF1880 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 242 1 242 242 419 100.0 1e-116 MQNLITMASGTLNEVYSGTEIATLFAEYGAEFNSSVPFISTPFPNFTSKATAIQNNLQSF TEEQQFKIIKELCESVLAQNPANKDVAKILKLLLKNYGSVYSNDKIDRNIINETNTWLTA SSRAKEEFEKAIQSYDNSIYNRYTLDSIRLAFEFFMQDILKNSKSLENQPIEGELLPLLR KKGIPKEIINLVRLIIKGLISYQNENVKHSQTFTDLEVEFVIEQTSILMKLFAKIEKIEN ES >gi|307679190|gb|GL457057.1| GENE 7 7824 - 8651 303 275 aa, chain - ## HITS:1 COG:no KEGG:EF1881 NR:ns ## KEGG: EF1881 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 275 1 275 275 493 100.0 1e-138 MNIDEAKQLANYFSDGSPGYILEFNNLEWDLYTKKIVGFGIQERFGGSKGNSFKEFLVSE DISDHLKFKLIYSLNETMKQIASIRQFENPSSYKSPKMNPLVTLLIEEAYHKKDSARLLN GTKFSKEVNLEYIQQLPTRISKDIQNKDFDSVLTKSNTMIDEVLKYIIENTKGKSIDNNT VRSKDLRNQAFERLNIKIDKDMDKRIKALVGALNTLSDKILEMRNSQGDAHAQGSRRIVI NEEEAILTANSAMILCEYLFRKYEKRKRFSDAKES >gi|307679190|gb|GL457057.1| GENE 8 8725 - 9228 689 167 aa, chain - ## HITS:1 COG:no KEGG:EF1882 NR:ns ## KEGG: EF1882 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 167 1 167 167 302 99.0 4e-81 MEQMRVYIANLGRYNEGELVGAWFTPPVDFDEIKERIGLNNEYEEYAIHDYELPFEIDEY TPIEEINRLCGLAEELEGTPIGEVASEIQHAFFNSFEEMVEHLDNIVYYPDCNDMSDLAY YLIEETGALGEVPTHLQNYIDYEAYGRDLEIEGNYLVTSRGVFELCE >gi|307679190|gb|GL457057.1| GENE 9 9241 - 9462 287 73 aa, chain - ## HITS:1 COG:no KEGG:EF1883 NR:ns ## KEGG: EF1883 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 73 1 73 73 102 100.0 7e-21 MNFGQNLYQWFLTNAQSLVLLAIVVIGLFLGFKREFSKLIGFLVIALIAVGLVFNASGVK DVLLNLFNRIVGA >gi|307679190|gb|GL457057.1| GENE 10 9859 - 11109 968 416 aa, chain + ## HITS:1 COG:FN1357 KEGG:ns NR:ns ## COG: FN1357 COG3547 # Protein_GI_number: 19704692 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 3 407 2 385 391 103 26.0 6e-22 MKLFVGLDVSSEKLDACFMTDDSTCSVLKEASYGNSQLGASQIKEYILEFSQKFEIESLV IGMEATSLYSFHPAMFFKEDLELNQLNLMVSVEQPNKIKKYRDIFEENKNDQIDAFYIAD YFRIQRQVNSIIKEEEYLALQHLTRTRYQLIKQLVRTKQHFIENIYYKCNTLSKELKAEG GSVLSATLVTLMTEDYTMDQLAELSLEEFANLIQKLGKYRFKNPEGIAKAISKAIRSSYR LGKVHQDSVDIVLGVLAKEIRSLEKLIKDLDKAIDDLVVVLPEYQCLTSIPGIGPVYAAG ILAEIGPINRFSDESKLAKYAGLYWRQNQSGNSEYENTPMAKRGNRYLRYYLVEATNSVR RYEPEYHAYYKKKYAETPKHKHKRAIVLTARKFTRLVDTLLRNHQLYMPPRSVIDK >gi|307679190|gb|GL457057.1| GENE 11 11241 - 11339 149 32 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLLAFGGSMLSVTVMCLMHASVAANQAMEKKV >gi|307679190|gb|GL457057.1| GENE 12 11372 - 12556 942 394 aa, chain - ## HITS:1 COG:BS_ydcR KEGG:ns NR:ns ## COG: BS_ydcR COG2946 # Protein_GI_number: 16077554 # Func_class: L Replication, recombination and repair # Function: Putative phage replication protein RstA # Organism: Bacillus subtilis # 66 394 27 352 352 255 42.0 9e-68 MVQRNLDYRLLKDRRNEYGISQNKLATACGLSRPYLNQIENGGVTASTKTMRKIFNQLES FNPDLPLSLLFDYVRIRFPTTDARKIIQEILHLKFDYMLHEDYAFYSYQEQYVMGDIVVM LSHEEDKGVLLELKGRGCRQFETFLLAQKRSWYDFFEDCLKAGGVMKRLDLAINDLVGLL DIPDLTKKCQKEECISLFRTFKSYRSGELLKADEKDGMGNTLYIGSLKSEVYFCLYEKDY EQYIKLGIPLDKTETKNRFEIRLKNDRAYHAIQDLLKGRSIESTTFSIINRYLRFADKVE GKRRTNWPLNEQWGRFIGRNRKEIQLTSEPKPYTIERTLNWLGRQVAPTWKMAKELDRLN QTTYIQDMVQNARLSDRHKKILEQQSMAIENLII >gi|307679190|gb|GL457057.1| GENE 13 12905 - 13072 287 55 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTEKEKVEEIMEKYNRNFSTLQKNASAKELKTVFKFVADESNRKQRELIGLDKEK >gi|307679190|gb|GL457057.1| GENE 14 13065 - 13142 68 25 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDIDNVELTLPISYTKEILEEELHD >gi|307679190|gb|GL457057.1| GENE 15 13300 - 13740 513 146 aa, chain - ## HITS:1 COG:no KEGG:EF1889 NR:ns ## KEGG: EF1889 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 146 1 146 146 273 100.0 2e-72 MTEDDSLQYAKENKKEIISSVIDGKEKEEEKTAIFMAGSPGAGKTEAAQTLTVLNSNLCV IDADKFRVLFPGYVGNNSDEFQRGSSLLVDAALDLVLKKGYSFILDATFATSKVKQNIER ALKKNYNVLVYYVYQDPFIAWDFTKK >gi|307679190|gb|GL457057.1| GENE 16 13827 - 14183 350 118 aa, chain - ## HITS:1 COG:BS_ydcQ KEGG:ns NR:ns ## COG: BS_ydcQ COG1674 # Protein_GI_number: 16077553 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Bacillus subtilis # 1 110 337 446 480 141 60.0 3e-34 MLTTKESAVILNKLKQIVMLGRQSGFFLILACQRPDAKYLGDGIRDQFNFRVALGRMSEL GYSMMFGEVDKNFFMKRIKGRGYVDTGGSVISEFYTPLVPKGYDFLESIKQVAQSKEK >gi|307679190|gb|GL457057.1| GENE 17 14285 - 15091 195 268 aa, chain - ## HITS:1 COG:no KEGG:BpOF4_20219 NR:ns ## KEGG: BpOF4_20219 # Name: not_defined # Def: putative COX1/OXI3 intron 2 protein # Organism: B.pseudofirmus # Pathway: not_defined # 3 268 34 298 304 223 46.0 8e-57 MRETKGEKWVCNSHISDKKKNQIKKEIKQRIKDIQKSPTAQNALLFNALVLGVHNYFRYA THINLDLNRMNYVLSFTTYNRLSNCSTRCYPNKASPTYKKFYSTTMKTYKVAGVYLYPLC DVSTKTIYGFNTEDTPFTPFGRQRLEHKSLQSLVYQELRKLMESKILNRMVEYLDNRISR YSMKSGKCEITKQFLPAKAVHCHHYLPKSLGGDDKFDNLRIIHKDIHLLIHTTNKMIIDH YVNELKLLPEQIAKINLYRKMCNLQNIQ >gi|307679190|gb|GL457057.1| GENE 18 14944 - 16101 135 385 aa, chain - ## HITS:1 COG:SMb21167 KEGG:ns NR:ns ## COG: SMb21167 COG3344 # Protein_GI_number: 16264581 # Func_class: L Replication, recombination and repair # Function: Retron-type reverse transcriptase # Organism: Sinorhizobium meliloti # 38 377 45 341 453 159 33.0 8e-39 MEVPRLNTKIRYWEYYDLQETFDQLFTQSKNGKKFYQLYELIISENNILLACRTIKANKG SSTPGTDSFTIDNYKEMNQAEFIHLILSQLENYKPKSIKRVMIPKPNGEKRPLGIPCMID RIIQQMFKQVLEPICEAKFYEHSYGFRPLRSAKHALGRIMYLINISKMHYAVDIDIKGFF DNVNHRLLIKQLWNIGICDKRVLAILSKSLKSPIQGEGISSKGTIQGGIISPLLSNVVLN DLDHWVSKQWHTFETKYPYTKGYNKFRALRDTNLKQGYIVRYADDFKIMTNDYPSALKWF HAVKLYLKDRLKLDISNEKSKIVNLRKRKSEFLGFTICVKQKGKNGFVIRIFLTKRKIKL KKRLNKELKIFKRALQHKMLSYLML >gi|307679190|gb|GL457057.1| GENE 19 16752 - 17768 588 338 aa, chain - ## HITS:1 COG:BS_ydcQ KEGG:ns NR:ns ## COG: BS_ydcQ COG1674 # Protein_GI_number: 16077553 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Bacillus subtilis # 31 328 41 335 480 266 46.0 3e-71 MYKEHRIRARDQHLVYHFILGWLIALLISWMGVFYFQEFRQFDISRVSLSTIETVWSMKE LICLLGSLGFSGAMLLLYIHFFPDHWRSLWHRQKLARMILENHWYEVKQTQSEGFFKDLN SSRTRETISYFPKIYYRMKEGLLSIRVQISLGKYQEQLLKLEKKLESGLYCELVEKELKD SYVEYTLLYDMIANRIGIDEVVAENGTLRLMKNQVWAYDSLPHMLIAGGTGGGKTYFLLT IIEALLKSDAELFILDPKNADLADLGTVMPHVYSQKEEISACVEDFYERMIARSKAMKEM PNYKPGENYAYLGLPPNFLIFDEYVAYMGANRFPTSIE >gi|307679190|gb|GL457057.1| GENE 20 17838 - 18182 397 114 aa, chain - ## HITS:1 COG:no KEGG:EF1893 NR:ns ## KEGG: EF1893 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 113 4 116 117 184 100.0 7e-46 MEINVEHILDCLDQYGKGELTEEQLVKALTYDEKMFLIMHQGLLGENSDSEDDFDVQDWL EEEESFFMVVEVNENLCRQAESVLEEIGVEMPDAIEGFLNQLVEKKQFPVVING >gi|307679190|gb|GL457057.1| GENE 21 18192 - 18566 514 124 aa, chain - ## HITS:1 COG:no KEGG:EF1894 NR:ns ## KEGG: EF1894 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 124 1 124 124 228 100.0 8e-59 MRLTEGIVVDSVLTFGKLRFSALRREVRKQNEDGTVSNEVKERTYNLKSSAQGRMIQVSI PANVPLREFAYDAEVELVNPIVDTVANYVFREGTTVNWFIKADDLVLKRQPNQGNSTNQI EGKK >gi|307679190|gb|GL457057.1| GENE 22 18579 - 18893 450 104 aa, chain - ## HITS:1 COG:no KEGG:EF1895 NR:ns ## KEGG: EF1895 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 104 1 104 104 195 100.0 5e-49 MELKFVVPDMAETFGKLSYAGEGEILTEGYGRNTTVIGRSYHLYSSKQRADDIEVVVAAE AGEKDFDQDQPLKAVNPHLVAKGYEIENRGFTDYVLYVDDLVKE >gi|307679190|gb|GL457057.1| GENE 23 19006 - 22149 2853 1047 aa, chain - ## HITS:1 COG:BH0361 KEGG:ns NR:ns ## COG: BH0361 COG4932 # Protein_GI_number: 15612924 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Bacillus halodurans # 247 655 1179 1531 1661 68 25.0 5e-11 MIVFADEIAHPQTVTVELDLAHQYVVEGTFSDGRPMSEVTVPHYAVYNGVKQDVFCIEPG VPIDNEFTPGYEKNPLPDMPEKAKLVSVLWKKAGTDVDTHIVAQKMIWQEVNGYTLHSIK RLNGSAVNIAAIEAKINQAIADYQKKPSFHNSTAKIVLGQSTTMTDTNNLNLSEFDEVVE NTANIDYRVNGNQLIITPNASSKESGVLTLKKSAGTGTPVAYKKVGQQTLMAGAIDKPNT YTVKIDVETEGSLKIKKVDKESGAIVPGTVFHLDFGKTLPAKDVTTDKEGIATLDGIPHG TKVTITEKSVPAPYTIDTIPMTATIKVGETIFMTSKNTREKGQIILDKTGIETGSDLWND NYSLAGNTFAIRKDSPTGEIVQEMTTDEKGHAETPKEIANALELGTYYVTETKASNGFVN TFKAVKVELKYANQTVALVTSNIKGQNQEITGETTLIKEDKDTGDKTQGRAVFEGTEYTL FTAKDGKAVKWSEAFKPELVKGTKASDETVTLALDEKNQAAFKHLAINEYYWQETKAPEG YTLDETKYPVSIKKVDDNEKNAVITRDVTAKEQIIRFGFDFFKFAGSAAGTAETGFNDLT FKVSPLEGTNEITGAEDEAITAYNEQLGFDGYGKFENLPYGDYLLEEVEAPEGFQKITPL EIRSTFKENKEDFVKSEYVFTITEQGQKQPIKTVTVPYEKLTNKAFSVSLNRLMLYDLPE EEDSLTSLATWKDGNKELSTLDSTELVDKLSYNLHEIKEDWYVVAQAIDVEATKDAQEKD EKAKPVVIAETTTTLANKEKTGTWKIRHKLTTEQVLDKTIVLFNYVYENKEAFEAGDEPV AKDASLNNQAQTVNCTVERHVSIQTKAHLEDGSQTFTHGDVVDMFDDVSITHDVLDGSKE AFETILYALLPDGTNKEIWKSGKIDYEVNDKEFTKTMLAEKVDTGKFPESTKFTFAEINY DKDENINGKHNEDLKEKNQTLTPKKVPTTPRTPKQPETPTVPSGYQESSPTVKTFPQTGE KNSNVLLFIGFTLIFATAGYYFWNRRN >gi|307679190|gb|GL457057.1| GENE 24 22313 - 22975 332 220 aa, chain - ## HITS:1 COG:no KEGG:EF1897 NR:ns ## KEGG: EF1897 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 220 1 220 220 377 100.0 1e-103 MKQDDGRIVWKNLSDLKLILLINQFIEKHEIKSSRQYHRKLLENPNSAPSMWFINQKYGS WKNLLVSLGCDNGEYGKWAKISEKDLLKIVESFITVEKITSQRMYEKRSVGKDVPSLSTL KKRFGDIRYLFRKNTEKSSFTDFELMIELRNEIVRLKLQDDLSMTKFRKLVQSPKLPSVD TIMKRTNKNWEELMTEIGFDYRKIKINKQRNNLSKKKKTK >gi|307679190|gb|GL457057.1| GENE 25 23346 - 23741 654 131 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227519245|ref|ZP_03949294.1| 50S ribosomal protein L19 [Enterococcus faecalis TX0104] # 1 131 1 131 131 256 99 6e-67 MAEVTIRIFGNKEKDKMNPLIQELTQEQLRTDIPAFRPGDTVRVHAKVVEGTRERIQLFE GVVIKRRGAGISETYTVRKVSNGVGVERTFPLHTPRVAQIEVVRYGKVRRAKLYYLRALH GKAARIKEIRR >gi|307679190|gb|GL457057.1| GENE 26 23837 - 24577 900 246 aa, chain - ## HITS:1 COG:lin1906 KEGG:ns NR:ns ## COG: lin1906 COG0336 # Protein_GI_number: 16800972 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-(guanine-N1)-methyltransferase # Organism: Listeria innocua # 1 239 1 240 245 310 61.0 1e-84 MRIDVLTLFPRMFEGPMGESIIGKAREKQLLELNVSNFRDFSDNKHQTVDDYPYGGGAGM LLKVQPIYDNLKAIEEETNQQPKRVILLDPAGKPFNQKMAEEFSQEEHLVFICGHYEGYD ERIRTMVTDEVSLGDYVLTGGELGAMVMIDATVRLLPDVLGNNLSAQTDSHSTGLLEHPQ YTRPAIFNDMEVPAVLTNGNHKLIAEWQLKESLRRTFLRRPDMLESVEMTPEMLKLLEEI KQEEQK >gi|307679190|gb|GL457057.1| GENE 27 24567 - 25091 707 174 aa, chain - ## HITS:1 COG:BH2480 KEGG:ns NR:ns ## COG: BH2480 COG0806 # Protein_GI_number: 15615043 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RimM protein, required for 16S rRNA processing # Organism: Bacillus halodurans # 1 171 1 173 173 191 56.0 7e-49 MTDYLNVGKIVNTQGIKGEVRVISKTDFPEERYQKGATLLLFQEKKAPIELVVKSHRKHK NFDILSFEGHPNINDVEKYRDGILKVAKDNLAELAEDEFYYHQIIGATVYDETGSELGKI KEILSPGANDVWVVQRPKKKDLLLPYIEGVVTKVDVENQRIDVDIPEGLIDDEN >gi|307679190|gb|GL457057.1| GENE 28 25199 - 26560 1587 453 aa, chain - ## HITS:1 COG:SA0956 KEGG:ns NR:ns ## COG: SA0956 COG1914 # Protein_GI_number: 15926690 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Staphylococcus aureus N315 # 17 451 13 448 450 482 58.0 1e-136 MKEKKTEKMLNYANGPSLEEINNTVEVPKNASFWRTLLAYSGPGALVAVGYMDPGNWITS IAGGAEYKYTLLSVILLSSLVAMLLQSMAARLGIVTGMDLAQATREHTSKRTGVALWVVT ELAIMATDIAEVIGGAVALQLLFGFPLLIGVLITTFDVLLLLLLTKLGFRKIEAIVSCLI AVIFFVFAYEVALADPNVGEVLRGFIPDTKIATDKSMLFLALGIVGATVMPHNLYLHSSI AQARKFDRNDDAEKAKAIRFTTWDSNIQLTVAFVVNCLLLILGGALFYGTNSELGKFVDL FDALKNPDIVGNIASPVLSILFAIALLASGQNSTITGTLSGQIVMEGFIHLKMPLWARRV LTRLLAIVPVIICVIIYGGSETAVEDLLLYTQVFLSIALPVSIIPLTMYTSDKKLMGQFA NPAWVKFLAWIIAIALTLLNLFLIYGTLTGLTN >gi|307679190|gb|GL457057.1| GENE 29 26757 - 27131 436 124 aa, chain + ## HITS:1 COG:no KEGG:EF1902 NR:ns ## KEGG: EF1902 # Name: not_defined # Def: glyoxylase family protein # Organism: E.faecalis # Pathway: not_defined # 1 124 1 124 124 246 99.0 2e-64 MKLDMVGIIVNDMTQALSFYQTLGFNVLGEASPDYTELQNNGVRISLNSLQMITGVYGFA PSQQGDKIELAFLCETAAEVDNTVKKMSQAGYIVFKEPWNAPWGQRYAIIKDVDANLISL FAPL >gi|307679190|gb|GL457057.1| GENE 30 27362 - 27961 747 199 aa, chain + ## HITS:1 COG:L114884 KEGG:ns NR:ns ## COG: L114884 COG0398 # Protein_GI_number: 15672877 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 7 197 10 201 201 178 53.0 7e-45 MSVTLSRKIVNIISILGIVATIIATIYFIRLGVFKDINALRGLVGQSVILGPIIFMLIQI IQVVIPIIPGGVSCAAGVLIFGPTMGFVYNYVGIALGSIIIFLLGRNYGKPFIMSLVSDK TYNKYIGWLDNEKRFERLFALAIFFPIAPDDALCLMAGLTKMSVKKFTLIILLAKPASIY LYSLALIYGGTFLTSLLGM >gi|307679190|gb|GL457057.1| GENE 31 28062 - 29864 1308 600 aa, chain + ## HITS:1 COG:L58914_2 KEGG:ns NR:ns ## COG: L58914_2 COG0584 # Protein_GI_number: 15673979 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Lactococcus lactis # 353 593 1 240 249 240 48.0 6e-63 MFSYFKNSIVNTLDFLKGTTAYFRDVLLMHGFMLFVLLPLLTSLSKLVLKEGGIDYISYD NLGAIATQHPYVLLTFLLIGLLILLALFFEFTFLLLSVYFIKKKQPITLTQLLHGTLLQI KKVRGITFLFFLAYFFLILPLSGLTFRSYLLTRVKIPAFILDFIFANRVIIIIGFVLLEL IILYLAIRLAFALPELILRDVGFRESLKRSWQITKRRFFQILGQFIIIGGTVLGIFTAGY FLIFLGQTAVETFKPEWSLPSAVIAMTLLQVMMLLNLVLSSVAIFYIIVDDMEDEGILPD TPEWFTPKSEVRVEWTTFRVVLFCLIAIIFGIGVGTYNTNYLSHTPDRKPVTISHRGVNG NNGVQNTLDSLIETNKAKPDYVEMDIQETKDHQFIVMHDFNLRALTGVNKRPNQLTLKEL TNMNVTENGQTAKMVSFDDYLAKANQLKQRLLIEIKTTPQDSPDLVQRFVKQYRENILEN GHILHTLTYDTAMALKKEEPRFYVGYVIPFNIVGPPKMPVDFFTMEYSTMNRNFVNAAHH DGKKVYAWTANDEDVMTRMIFYGVDGIITDQLSLLNETMKTDLENPTYSDKLLNFAIGMG >gi|307679190|gb|GL457057.1| GENE 32 29955 - 30641 910 228 aa, chain - ## HITS:1 COG:SP1972 KEGG:ns NR:ns ## COG: SP1972 COG0670 # Protein_GI_number: 15901795 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Streptococcus pneumoniae TIGR4 # 3 228 10 235 235 160 47.0 2e-39 MNNQEYIQTGTGLNKFYAKIYGFLALGIGISAIMAYAMTTVFLPVLATLFQSSLAFWMIW LVEIGLVLYLGAKAQKNPTIAIAGFVAYALLNGVTLSVTLLMYTGGTVAGAFLSAAATFG AMSLVGVFTKKDLSAVGHAAYSALIGIIIAMLLNMFLLHSSAVEFFISILMVLIFSGITA YDNQRIRQVYAQTGDQAGTGMAVFFALQLYLDFINLFLAFLRIFGKNN >gi|307679190|gb|GL457057.1| GENE 33 30634 - 31119 653 161 aa, chain - ## HITS:1 COG:FN0816 KEGG:ns NR:ns ## COG: FN0816 COG2030 # Protein_GI_number: 19704151 # Func_class: I Lipid transport and metabolism # Function: Acyl dehydratase # Organism: Fusobacterium nucleatum # 14 137 4 127 134 70 29.0 1e-12 MNIGKPRKLGKTIEDIEEGDSLSLTESIEDKDLLLYLGLTNDANPLYIQHDYAQKTEYEK PIVPSIMLMGIITSAISKHLPGPGSHVVNFSVNFVEPVFHYETLTFQLEVIKVDKMKDVI TISVEAVNEQENRVLDAVVMVQPPQVTIDELTEKEGTLTYE >gi|307679190|gb|GL457057.1| GENE 34 31317 - 32654 1552 445 aa, chain - ## HITS:1 COG:lin1646 KEGG:ns NR:ns ## COG: lin1646 COG0773 # Protein_GI_number: 16800714 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Listeria innocua # 8 439 3 433 447 552 60.0 1e-157 MGNQENKLYHFVGIKGSGMSSLALVLHQKGYNVQGSDVEEYFFTQRDLEKSGVPILPFNA DNIDKDMIVIAGNAFPDTHEEIARAIELGAEVIRYHDFIARFIEPYTSIAVTGSHGKTST TGLLAHVLSGINPTSYLIGDGTGHGEPDADFFAFEACEYRRHFLAYSPDYAIMTNIDFDH PDYYKSIEDVFSAFQTMAHQVKKGIFAYGDDKYLRQLESEVPVYYYGVSEEDDIQARNIQ RTTEGSSFDVYHKADFVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSFKGV KRRFSEKKVSDMIIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEF AEALDLADEVFLCNIFGSARETQGEVRIEDLGEKIQKGGQVITEDNVSPLLDFENAVVVF MGAGDVQKFEQAYETLLSNTTRNVL >gi|307679190|gb|GL457057.1| GENE 35 32809 - 33753 1040 314 aa, chain - ## HITS:1 COG:no KEGG:EF1909 NR:ns ## KEGG: EF1909 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 314 1 314 314 471 100.0 1e-131 MDNAQVKRKHFRFPAYDDEQGVKLPTDNERNLFQDDLIGKAMSGSRRTATSAEDTRQSTP SVQQPTTNQSTTNKQTQQLTAAQQEQLARHRSNLPDYTKHASKATKNKQATKKNNSLFGT PKGNGWTQTYKKKEVVAKPSRPAASPLVQKTTPSYFVPKYIPASVIPEEQEPSFTEEELL KAMKKDRRSYVILDDEPTAFQVKDTEEDPTVRKFNIPTSEPEIPLTRRQYQQIKPDLERF GEDALDLRSRSRLNAAKKNAKSQTAYGKKLAKANAQVEPEAPVTEEKKKGILDKPLSGML EDSSSVLENSKYFS >gi|307679190|gb|GL457057.1| GENE 36 33880 - 34839 1110 319 aa, chain - ## HITS:1 COG:lin1983 KEGG:ns NR:ns ## COG: lin1983 COG4129 # Protein_GI_number: 16801049 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 1 312 1 312 327 224 41.0 2e-58 MKIGLRTVKTAISAALAMIIAEKLGLLYAPSAGIISVLSVTSTKKTSVMTGIYRLLSLAL ATILAYICFTFLGFTAIAFGIFLLLFIPAAVYFQLSDGIVVSSVLVTHYLVEKNLSWAII GNEFLLMSIGVGLALLANSYMPDTEKRLREDQEVIETMFRKILREMALHLNNAAGERNLV MHCADLKTFIRTGETWAKNHAENQLLSTNTYYLEYFAMRKMQSNILKNMLELLEDITVDA QQVRYIQQLLEYTAETFAENNDGQEIMNRIKTVYETYRTKPLPQTRSEFENRARLFQFLQ LFQSFIQVKADFAKLQLDK >gi|307679190|gb|GL457057.1| GENE 37 34942 - 35553 599 203 aa, chain + ## HITS:1 COG:SPy1879 KEGG:ns NR:ns ## COG: SPy1879 COG4129 # Protein_GI_number: 15675698 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 3 152 15 164 183 130 44.0 2e-30 MIVGRFRLGMRTLKTAIAVMLCILLFQFSHRGSPMIACLAAVFSLRQDLNTSLSFGKSRI IGNTLGGFLALLYVLAQDYFPNQHLVELLLLPLLVIIVIVVSDGINNNAGIISATATLLM ISLSIPQSDSFQYAMERVLDTFIGTFIAIGLNVFLQPKPAEEAHEISEDLAELEKKEKEL ETLRQQVQARIAAEENTDDKANK >gi|307679190|gb|GL457057.1| GENE 38 35594 - 36475 1102 293 aa, chain - ## HITS:1 COG:L118696 KEGG:ns NR:ns ## COG: L118696 COG1940 # Protein_GI_number: 15673470 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Lactococcus lactis # 1 285 1 283 293 262 46.0 6e-70 MAILAFDLGGSSVKYGVWTGKELTNQGSFPTPGSWEEMKAHLYSVYADKRNESISGVAFS SPGVVDEKSQQILGISAIPYIHHFNIYEELEALFGLPVTIENDANCAGLAEIYEGAAKGK KEVLFVVIGTGIGGAIFRNGELYKGAHLYGGEFGLNFLSNGQTFSEIGTAVKMAQRYCER IGVEKQAVTGEEVFELAQRGDEIAREEVNNFYDYLTQGLFGLQFSYDPEMIVLGGGVSAK EGLLAEINRRMLTHLQTFELKDFVPEIVTCHYQNDANLIGAAANFQAKTNWEL >gi|307679190|gb|GL457057.1| GENE 39 36478 - 36780 378 100 aa, chain - ## HITS:1 COG:L122982 KEGG:ns NR:ns ## COG: L122982 COG0759 # Protein_GI_number: 15673654 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 77 1 77 88 97 59.0 6e-21 MKNPLIGGVRFYQRFISPGLPARCRYYPTCSQYMIDAIHTHGSVKGTTMGVARILRCHPF VKGGIDYVPLKFRLTKNPDETYHGPYTYRRNKKTEVEKDG >gi|307679190|gb|GL457057.1| GENE 40 36958 - 37110 231 50 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGLKFERSNDLDKLFDSFAVDPLKKEVPLEELAKQRQEVKKEEAKKQAKE >gi|307679190|gb|GL457057.1| GENE 41 37127 - 37708 756 193 aa, chain - ## HITS:1 COG:SP1568 KEGG:ns NR:ns ## COG: SP1568 COG0218 # Protein_GI_number: 15901411 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Streptococcus pneumoniae TIGR4 # 1 189 3 191 195 296 74.0 1e-80 MNVHNAEIVISAVSPKQYPESQLPEIALAGRSNVGKSSFINTLINRKNLARTSGKPGKTQ TLNFYLIEDALHFVDVPGYGYAKVSKTERAKWGKMIETYITQREQLRAVVSLIDLRHPPT QDDIQMYEFLKYYDLPVIIVATKADKIPRGKWNKHESVIKKALNFDKQDDFIIFSSETKE GKEAAWTAIEKFL >gi|307679190|gb|GL457057.1| GENE 42 37806 - 39059 267 417 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 154 395 248 444 466 107 32 4e-22 MYDNTDNNGTVRCSFCGKTQEEVKKIVAGPGVYICNECIDLCKEIIDEEFYDEAVRELTD VPKPQEILNVLNEYVIGQERAKRTLSVAVYNHYKRVNQSETAATQDDVELQKSNICLIGP TGSGKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQSADYNVERAEKGI IYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDT TNVLFIVGGAFDGIETIVKNRLGEKTIGFGKTNSALNEEESIMQHIIPEDLLKFGLIPEF IGRLPVMAALDKLTNDDLVRILTEPKNALVKQYQKLLSLDDTKLEFEPEALKAIAAKAIE RNTGARGLRSIIEEIMMDVMFDVPSDESIEKVIITKMAAEGTGKPTIIYNKKDKEAV >gi|307679190|gb|GL457057.1| GENE 43 39251 - 40279 1283 342 aa, chain + ## HITS:1 COG:SP1506 KEGG:ns NR:ns ## COG: SP1506 COG2706 # Protein_GI_number: 15901353 # Func_class: G Carbohydrate transport and metabolism # Function: 3-carboxymuconate cyclase # Organism: Streptococcus pneumoniae TIGR4 # 1 341 1 335 337 344 52.0 1e-94 MLEQILLGTYTRRASQGIYKIALDTTQGRLTEATLLLEETSPTYLALSQKGELFSVTNVD GEGGTAAYQPEMDHFNLLNKVTEEGAPPCYVAVDENRQLVYAANYHQGIVHVYRILEDGS LEDADKVIHTEPTGPHENQNNAHVHYTDLTPDQRLVVCDLGTDRVYTYNVSLDGKLSEIA QFVTEPGTGPRHLVFHPTKSLAYLFGELDSTVSVLSYDETDGSFTELQKVSTLPADYDAF NGGAAIRISSDGRFLYASNRGHNSIAVYAVSENGEAIERIQLISTEGDIPRDFDLDPSED FIVVANQDSDNLTLYRRNQETGLLEMIQKDVAVPECVCVLFV >gi|307679190|gb|GL457057.1| GENE 44 40370 - 40846 348 158 aa, chain - ## HITS:1 COG:no KEGG:EF1919 NR:ns ## KEGG: EF1919 # Name: not_defined # Def: acetyltransferase # Organism: E.faecalis # Pathway: not_defined # 1 158 1 158 162 304 99.0 6e-82 MKIRVADEKELPMILQFLTEVKAYMDVVGITQWTKDYPSQGDIQEDITKKRLYLLVHEEM IFSMATLCMEQEQDFVWLKRFATSPNYIAKGYGSLLFHELEKRAVWEGRRKMYAQTNHTN HRMIRFFESKGFTKIHESLQMNRLDFGSFYLYVKELEN >gi|307679190|gb|GL457057.1| GENE 45 40858 - 42231 1413 457 aa, chain - ## HITS:1 COG:VCA0665 KEGG:ns NR:ns ## COG: VCA0665 COG3069 # Protein_GI_number: 15601423 # Func_class: C Energy production and conversion # Function: C4-dicarboxylate transporter # Organism: Vibrio cholerae # 1 456 5 456 459 223 36.0 6e-58 MIESLLVLVVLVVVAYLIVKNYHPALSLIIGALVLLACAWMLGHPIYPAGEGTGFGLFDI FLKFKDTIIAQVSSAGIVIMILFGYSGYMNAIGANQMAVNFLVKPLMKIKRKSLFVPVVF LIGNLMSLVVPSASSLAIILMSILYPMLASMGISSLTAAGVIAMTATIMPTPLGADNVIA ANTLGYDVLNYVVWNAKISLPSLLIIAVAQYFWQKYCDKKEGEAAYVSLNEEGLSKQKEF DVPKFYAILPILPLLLIVGVGIAGMFIKGITMDIFVLTFISFFIAVLVETLRLKSFKKVQ DTAVEMFKGMGQGFSQVVMLVVGGSLFTSAIQTLGIIDSIMASVEASSSAGIVTTLIFSG ATTLFGILSGGGLAMFYAVIELIPGIAEKAGIDGILISLPMQMIANLTRTISPVAAVVMI VASTVGVSPIRILKRTSVPTIIGIISVIVLSILLLPY >gi|307679190|gb|GL457057.1| GENE 46 42248 - 43168 1086 306 aa, chain - ## HITS:1 COG:STM0051 KEGG:ns NR:ns ## COG: STM0051 COG1957 # Protein_GI_number: 16763441 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Salmonella typhimurium LT2 # 8 300 7 300 306 266 48.0 5e-71 MDTKKRPIIIDTDPGIDDAVALAIALNHPNLEVRLITTVAGNVDVEKTTNNALKLVDFFG KKVPVAKGCNCPLLIQLEDSAEIHGETGMDGFEFPQPISTCLDIHAVEAMRKEILSSDVP LTIVPIAALTNIALLLTLYPEVKENIAEIVMMGGSLARGNTNTSAEFNTYVDPHAAQIVF QSGVPLTMVGLDVTSQAVLTNHEVTAIRALGRVGEMFYGLFRHYRGGSLTTGLKMHDVCA IAYLTSPELFETTETFIEVALEGPAAGATVADLKMKYHKNTNAVACIDVNVEAFQKWVVE KMKAVN >gi|307679190|gb|GL457057.1| GENE 47 43351 - 45261 1528 636 aa, chain + ## HITS:1 COG:PA1950 KEGG:ns NR:ns ## COG: PA1950 COG0524 # Protein_GI_number: 15597146 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Pseudomonas aeruginosa # 323 621 2 305 308 181 36.0 4e-45 MNIKDIAKLAGVSASTVSKIINNKDQTISKETRERVLKIVRDYNYTPYSANLVTNSTTKT FVLLLNSHETFEAWVTSFIDKAQENGYNCLILNSHGSLEQELKNITSPTLKQASGIIWDP INENSKQYAKFIEELTIPYYFVNHSTNELPSLAGLYEEASYVLTQELLQNNHKKISYFVT NPKYKEAIIAGYKKALFDVNLPFSKENILTTIPADFSNQLITDGITGILTDDYTQAVFLE QLLKQSGLRTPDNYSLLAIKRKIDRSFLPDHISSVLLDTETFGSQLALSLLNKRKEKTAL INEAEKLVLDHKNTLGMSSVNPHSKMIVVGSLNVDNYLYSTNLPHNGKTNFLSSYAKFPG GKGLNQAVGLTKLGHQATLIGCLGSDTDANYLYKELEKYHVTTDGITRIQDTETGQAYIY VETSGDSMISILPGANTALTPKKIAQQKHLFMDASFCLIQTEIPLSAVKKACEIAQHSGV PIILKPAAIHHIPVNILEKVDFFIPNEDELLELQPDTGTLEEKAAYFLEMGVKNVIVTLG KKGVLLKTHQVCHYFPATENIAVDSTGASDSFISALASYLSKGYPTEAAIQIAIQAAGFS VSKEGVIDSLVDHVTLENYLIKKEPALFAHRNTCVD >gi|307679190|gb|GL457057.1| GENE 48 45380 - 46888 1046 502 aa, chain + ## HITS:1 COG:no KEGG:EF1923 NR:ns ## KEGG: EF1923 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 23 502 1 480 480 867 98.0 0 MSLIKTQDAIKTFLLSKKTQKKLAVFLYLAKQTNLDLSSVARKFDLSTKNLSIYLREIQE DLATLPENTLEIQIHHGKISLHTTSNDFLSHYFLLFNYYCVHSTDFILFQAIIKKENNSV WKVSQETNFSSSYIYKRLNNINKLFGLYGISVHFSPSASKVITGSEFQVLYAFLDVYWTI FLNTLALPRYTSTYFEDILTQHIKPEILERLEHASLLKLNLLLHIAKYRFPYTCEDDLQK EFEEHPYLRLFSDSKQTIFCSQSNFSEDQQRVVDIIAPIAIDNFDSAKRAKDLLVALNEI SCPEYFYVDSLLTNFCEVFQIPKMREFDRHYFLLILFKNIIYNQLFISQQPNTAILDFLV NKNSTYQKDLQKKIYAFYRNFSAHSPYQLRFKDQENPIWTCELLLRIYKHYSPRKKIKIG VAYSRDFYIASFIMMKIKQAFSEDIIFERTDFSSCDIVITDYPLFDLPKEIDRIYILEEE LTREDWELIFSKISIAIFDLQY >gi|307679190|gb|GL457057.1| GENE 49 47207 - 48049 791 280 aa, chain - ## HITS:1 COG:no KEGG:EF1925 NR:ns ## KEGG: EF1925 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 280 1 280 281 466 99.0 1e-130 MAKQKNFYDTYDALFQKPKWSFFPVTRTDTAKQLPNPNKKVVKPQTKKKKKQKKNKKIIW IGIAVAIGFIVYIDLAEKDDYWDYSASSEDVYPLKEAGLTTTGPVDLEKPLKVTIEQNKL LFNQGYQIEIIGDADIETSGGKNFLILPSTEEYPDTKYLGNISFYEKRDYYTSAGMYLSG NLVNSLSDYLDTSKEFIKAYPIDKIADVQTGYILKRNQGYTDISKYYLFKDGTGFELEVS VDQLEKVKDPKDYSSFVKTYAKEVAFIEKSFKFESTDEES >gi|307679190|gb|GL457057.1| GENE 50 48042 - 48581 444 179 aa, chain - ## HITS:1 COG:L175712 KEGG:ns NR:ns ## COG: L175712 COG4915 # Protein_GI_number: 15673319 # Func_class: R General function prediction only # Function: 5-bromo-4-chloroindolyl phosphate hydrolysis protein # Organism: Lactococcus lactis # 29 162 63 195 208 74 29.0 1e-13 MNGIMVLLVGAGYIGWVIYRNGRTYFRYKKNLKKYQTTHHLTDSDLEMYQRIMDELKKQI IYLNELTNKSRNLKKIEQVELGVASAKGIFKHLVKYPEAITHFSDFLYHKVPEILRASER FLSIKEDKLSTEEITLATNGILSTIRVLSESITDDYEKLVSEASEEISLSKKLVERKNG >gi|307679190|gb|GL457057.1| GENE 51 48854 - 49573 1155 239 aa, chain - ## HITS:1 COG:lin1574 KEGG:ns NR:ns ## COG: lin1574 COG0580 # Protein_GI_number: 16800642 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Listeria innocua # 3 235 4 236 272 258 59.0 6e-69 MGTSMMTQLFGEFFGTMILVLLGDGVCAAVNLKKSKAFASGWVVIALGWGAAVTLAVYMS GYMSPAHLNPAVTVAMAITGNFEWGMVLPYIVAQVLGGFIGGLVVWLAYLPHWNITEDKG AILGTFATGPAVRNYPANVLTEIIGTFVLVFGLLAFSQNDLAAGINPMLVGILVLGLGLS LGGPTGYAINPARDLGPRLAHQIIPVKTKGDSDWAYSWVPIVGPILGASLAAVIYLFTI >gi|307679190|gb|GL457057.1| GENE 52 49581 - 51410 2158 609 aa, chain - ## HITS:1 COG:SP2185 KEGG:ns NR:ns ## COG: SP2185 COG0578 # Protein_GI_number: 15901992 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Streptococcus pneumoniae TIGR4 # 1 607 1 607 608 744 63.0 0 MTFSIETRRQSIDALKTQHLDVLIIGGGITGAGVALQASAAKMKTGLIEMQDFAEGTSSR STKLVHGGIRYLKTFDVEVVADTVKERAVVQSIAPHIPKADPMLLPIYDEPNATFNLFSV KIAMDLYDQLADVTGTKYANYLLTKDEVLAREPQLKSEGLQGGGVYLDYRNNDARLVIEN IKQAVADGAHAVSRVQAVGFLYNDEGKITGIQAKDLLTDEQFEIHADVLINTTGPWSDKL RGLDKNDSFTPQMRPTKGVHLVVDKSRLNVPQPTYFDTGKQDGRMVFVVPREEKTYFGTT DTDYHGDFQHPTVEQSDVDYLLEVVNNRYPEVQLTIDDIEASWAGLRPLISANGGSDYNG GNNGKLSDKSIDEVIDVVDRYQKNQTDKREIEEVLNHLEDSLVENKVNPSAVSRGSSLER SADGLLTLAGGKLTDYRKMAEGAMKMIQTILAEEYQKEFTLIDSKNYPVSGGKLNPATVD EELEALAKHGVSKGLSEKDALYLAHLYGSNVPTVFEMIDDAKVIPGLTLTETVSLNYAME EEMALTPVDFLLRRTNHLLFMRDRLDQVKAGVIEEMAQHYQWTAEERARHIETLEKVIEE SDLKNLKVG >gi|307679190|gb|GL457057.1| GENE 53 51431 - 52936 1812 501 aa, chain - ## HITS:1 COG:L0014 KEGG:ns NR:ns ## COG: L0014 COG0554 # Protein_GI_number: 15673228 # Func_class: C Energy production and conversion # Function: Glycerol kinase # Organism: Lactococcus lactis # 1 497 1 498 498 789 77.0 0 MAEEKYIMAIDQGTTSSRAIIFDKKGNKIGSSQKEFTQYFPNAGWVEHNANEIWNSVQSV IAGSLIESGVKPTDIAGIGITNQRETTVVWDKATGLPIYNAIVWQSRQTTPIADQLKEDG YSEMIHEKTGLIIDAYFSATKVRWILDHVEGAQERAENGELMFGTIDTWLVWKLTGDTHV TDYSNASRTMLFNIHDLDWDQEILDLLNIPRVMLPKVVSNSEVYGLTKNYHFYGSEVPIA GMAGDQQAALFGQMAFEPGMVKNTYGTGSFIVMNTGEEPQLSKNNLLTTIGYGINGKVYY ALEGSIFVAGSAIQWLRDGLKMLQTAAESEAVAKASTGHNEVYVVPAFTGLGAPYWDSQA RGAVFGLTRGTTREDFVKATLQAVAYQVRDIIDTMKEDTGIDIPVLKVDGGAANNDFLMQ FQADILNTAVQRAHNLETTALGAAFLAGLAVGFWKDLEEIKAFQEEGQQFEPIMAEEERE DLYEGWQQAVAATQQFKRKNK >gi|307679190|gb|GL457057.1| GENE 54 53213 - 54679 1142 488 aa, chain - ## HITS:1 COG:no KEGG:EF1931 NR:ns ## KEGG: EF1931 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 488 1 488 488 870 99.0 0 MKVETLLEKKAMRQLLTVQQTILAGGTCSVSDLTAFLAVTKASFEKDLEDLHYFLKPFGQ DCQLTYDGQQLSITLSDFFSLNHLIEAFVKESLKFQLLDYLYRNKEFSIVQLTTKFMISE SSLFRKIKELNQLLAAFELQIKNGQLQGEELQIRYFYFQLYWYITPYEIHQKKTMSPLNK RIIEGIETGLGFTFNEHNALKVSLWLSITKKRLAVTSKKYQQLRKKMIDFKEDPLFKQVR QLFFRFSSRYSLELDEGESMIHFVFLITMSVLPESAFDEYSLIRGRRSAVSLADTFILEN VVLYYRPHKFEPTLEKTMAYYFSQIHGKLYFFKGELEVFDRAHIWEKEQQLSSRELASFS TTLLEKALACFDETYQPGDSLHELSLVKYLSVLTLIEFKMIGEIKIGIHLAMDALYQAAL TQVLMLSLKNMNGTLVERYQPEQTYDLIVTNYQQTSYQGTPEVYVLSELSSTYDVQQLKK KIRTLREK >gi|307679190|gb|GL457057.1| GENE 55 54669 - 56003 1260 444 aa, chain - ## HITS:1 COG:pli0044 KEGG:ns NR:ns ## COG: pli0044 COG0446 # Protein_GI_number: 18450326 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Listeria innocua # 1 436 1 442 454 166 27.0 1e-40 MKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARY ITEEELRRQKIQLLLNREVVAMDVENQLIAWARKEEQQWYSYDKLILATGASQFSTQIRG SQTEKLLKYKFLSGALAAVPLLEKSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENL LPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQKISCDSGIFALNL HPQLAYLDKKIQRNLDQTIAVDSYLQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVR TGLVVANNLEEKTHRFIGSLRTMGTKVGDYYLASTGLTETEGLFFPQTLASVIVRQPAPP LQHGTEILGKLIYDKVTQRVLGAQLCSKNNCLEKINTLALSIQTGQTLTDLLQKDYFYQP SLTNIYDITNLMGASAYWRENDES >gi|307679190|gb|GL457057.1| GENE 56 56183 - 56539 431 118 aa, chain + ## HITS:1 COG:no KEGG:EF1933 NR:ns ## KEGG: EF1933 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 118 1 118 118 184 100.0 1e-45 MSATKEQLELFLFYLSETHTKSLSLHDLVTSRPRPEEARILLNINEVFTYYHSARVLYTS VPALENNKSEPFFQAFENFYFELKQHFFNEEDETNQLNERLEEMKIAFEQLTDDYNVL >gi|307679190|gb|GL457057.1| GENE 57 56573 - 56734 215 53 aa, chain + ## HITS:1 COG:no KEGG:EF1934 NR:ns ## KEGG: EF1934 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 53 1 53 53 67 98.0 2e-10 MKQEEVIERLKEELNLPFFNGTLEEKNYSEADYQQIKKELIQYFDDYVRNVEN >gi|307679190|gb|GL457057.1| GENE 58 56977 - 57417 714 146 aa, chain - ## HITS:1 COG:no KEGG:EF1936 NR:ns ## KEGG: EF1936 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 3 146 1 144 144 260 98.0 2e-68 MVMRPNLGFYVQTINDIVKTTEDIGEVMNPYYEEVRQAIDKNKVNDLTAERIAEIQAKFK EGTEKYELMLKKVGTLKPTPQVLGIHKKFQHAYTEYVAGCNEMILATDPETGIDAELFNA SEEKQDQATDELTFAITRMSNILLKK >gi|307679190|gb|GL457057.1| GENE 59 57487 - 58023 403 178 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227385040|ref|ZP_03868434.1| acetyltransferase, ribosomal protein N-acetylase [Jonesia denitrificans DSM 20603] # 9 175 2 168 173 159 47 7e-38 MKRKIIFETQRLIVREWQSEDEVELKKFLQDENVMYAYEHAFSDEEVANWLKWNLQSYQE YGYGLWALEKKRTGEVIGECGLTNQLVKGKSYPEIGYHLCVKEWHKGYAIEAAAAAKQYA FDVLNFPEVISTIRDTNLASMNVAIRNQMLVRDRYIKTYRGKTMPHYVFSVKNQKNED >gi|307679190|gb|GL457057.1| GENE 60 58093 - 60798 3461 901 aa, chain - ## HITS:1 COG:SPy0623 KEGG:ns NR:ns ## COG: SPy0623 COG0474 # Protein_GI_number: 15674699 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pyogenes M1 GAS # 6 899 3 888 893 1124 66.0 0 MSEEKKTQLSEAFYAQDDTVVLEKMNTTTDGLSAQEAQKRLETYGENVLDEGKKKSLAVK FFEQFKDFMIIVLLAAAVISAVFSHDVVDSIIILVVVILNAIFGVIQEAKAEQAIEALKE MSSPNANVRRDGHVITVKSDELVPGDIVLLEAGDVVPADLRLLEANSLKIEEAALTGESV PVEKEVTILEGTDIGIGDRINMAYSNSNVTYGRGLGVVVGTGMNTEVGKIAGMLASEQET ETPLKQNLNQLGKMLTIAILVIAAVMFVVGMMNGRSWIDMLLTSISLAVAAIPEGLPAIV TIILALGTQKMAKKNAIVRKLPAVETLGSTDIICSDKTGTLTLNQMTVEALYTDGQVLSA STEIPADNMALKIMNFTNDTKIAQDGSLIGDPTETALVQFGLDHAFNVTEKVAAEPRVAE IPFDSDRKLMTTVHELKTGGFLVSVKGAPDELLKRCTEILSNGETSPLDETKRQEILKTN TSLAKQALRVLGMAYKYVETIPAEMSSELVEKDLTFAGLVGMIDPERKEAADAVKVAKEA GIRPIMITGDHRDTAEAIAARLGIIKEGDDDAVITGAELNELSDEKFAQVVGHYSVYARV SPEHKVRIVKAWQQEGKVVAMTGDGVNDAPALKAADIGIGMGITGTEVSKGASDMVLADD NFSTIIVAVEEGRKVFSNIQKTIQYLLSANLGEVLTLFIATMLNWDTLLPVHLLWINLVT DTFPAIALGVEPAERDVMSHEPRDKKSNFFSGGVLSSVVYQGITQGALTLIVYKMSIMFP AHTAANTNLSAQALYDLQHGDALTMAFATLGLIQLFHAFNVKSIYQSIFKVGLFRNKSFN YGILVSFLLLAATIVIPGFNDLFSVTHLDAYQWAIVAGTSFAIIPIVEIVKFFQRKAGKG A >gi|307679190|gb|GL457057.1| GENE 61 61116 - 61766 600 216 aa, chain - ## HITS:1 COG:no KEGG:EF1939 NR:ns ## KEGG: EF1939 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 216 1 216 216 354 99.0 2e-96 MWKKKIVLSFLFYLISALGISLTIQAGIGVSSFNAFNVTFATLTHLKVGTVTTAINLAFL GTCWLLDQQRKIQDYLIILVALIGFGFVINFFLYQLFGSLVFQNYLVKIVLFILGTIIAG IGTGQVVALGVLQFPIEKFCTLISERTRYSFQFYRYLVDIFCVSLALGLSISYHLPIFVR EGTVISLFLLSWVISWSRKRGQQRILRIQIKKLESE >gi|307679190|gb|GL457057.1| GENE 62 61855 - 62520 622 221 aa, chain + ## HITS:1 COG:ECs3055 KEGG:ns NR:ns ## COG: ECs3055 COG0664 # Protein_GI_number: 15832309 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Escherichia coli O157:H7 # 22 219 2 208 219 120 34.0 2e-27 MLKTAYQQSPKQELAKNTPFFNETDLKHSFIIDFENQEFIHHQAEPLNYLFYLIKGKAKI LKTERNGRQSIVQFLTTGDLIGDLTLVQAETIPKDVIALGETCCLAIPLAYAETVLKNKV LFMQQLSHYLGKKMLQRVDHFTTNQTYELSYRLAELLLVAANHEDVYKEKHTEIAEYLGV SYRHLIYTFKQFRERGFIQKQGTAYHINRLALHSFVQKMKS >gi|307679190|gb|GL457057.1| GENE 63 62592 - 62987 501 131 aa, chain + ## HITS:1 COG:no KEGG:EF1941 NR:ns ## KEGG: EF1941 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 131 1 131 131 234 99.0 1e-60 MEQASFTVSSWQEQPIDNLNENFPVNQASATYQLSGALSGTASVEYLMTYQGSSMADGLE AVAQVVGFLHFEGTYLGKKGTFTACEKGTFTQGLLDCPGELFQASGELAGLSGRYTYEFS QEEALLHLDFV >gi|307679190|gb|GL457057.1| GENE 64 63097 - 64278 1074 393 aa, chain + ## HITS:1 COG:lin2916 KEGG:ns NR:ns ## COG: lin2916 COG0477 # Protein_GI_number: 16801975 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 2 381 3 386 396 266 43.0 4e-71 MKNTRNTVPSLLIIILLVGFPQISESIFTPILPALSSAFNIHDSVAQLTMSIYFVAFAVG VLFWGILSDTIGRRPAMLLGILCYLIGNIGLFLSPTFPWLLFFRLIQAFGASVGSVITQS MMRESFNDLQRGKIFAQTSAALSLSPAIGPLVGGLVQTYFGYQHVFSTLIVMAVLLLFYS FYRLPETFHLGNTLTKAPFWSVAKRLSFDSKVWCYGLLIGGINGLLFSYYAEAPFIFINH FGFSSVQYGFLGLILAASSILAAVLINWLLGYWSAEKIAFAGLLLSIFAACCLLIMTQFE TIIGLILFIFLFFLGINITLPNALSMALKGYESVIGTASGIFSFVYYLFVSFFTYLISYF HNGTIWVLPLYFLSFACLLAFSYYVIVYRKTLK >gi|307679190|gb|GL457057.1| GENE 65 64316 - 66151 1560 611 aa, chain - ## HITS:1 COG:mll7848 KEGG:ns NR:ns ## COG: mll7848 COG1368 # Protein_GI_number: 13476512 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Mesorhizobium loti # 9 609 39 641 653 194 27.0 4e-49 MKKRVEKFRRWPYRYLLYGIGFILLIIFSNLYLQWCQNNLSVDLAFKFAFSWHTEKFFLG CFVLSVFLLFLCSLAGSLGVGALLYSVIIGVLGFADYQKMFYRVEPIYPDDLKMITEVSL LKEMVGLWPFVFVVALGCVALFFLGKAFYKSFFLSKKKQTIRVLSLVLSIGLFSYIGDFN NPQNLLRKAYNKTALWIPYSQKMNYYNTGFIGGFLYNLKVEAMDQPKGYSKEAISEITQK YQKLAEAKTVPSNEQPNIVFVMSESFSNPDHLKGLSIIGNPLADYQQIADKTYSGQMLSQ NYGGGTANIEFEALTSFSMELMNAQMTTPYTMMIPKMTELPSIVSLLKEQKYQTTAIHPY NTSMYKRKDVYKILGFDQFINEKTMNYTDKLENNPYISDQAAYQEVTTLLKEKEQPQFIH LVTMQTHMPYENKYTTSNYFSQGNGNQVALNNYLQDIAYSSEALKNFLQEIEKMPKRTLV VFWGDHLPSIYDENIQALNEGAALHQTEFLMYDTANQLTEKNQHQATISPFYFAPSLFQQ SGLPQSGFYAMLNEVQEQLPAFEKGNYYLGGEWKKTVEMNKKQEQLYEEYRLIQYDIVSG KQYSLENQFFS >gi|307679190|gb|GL457057.1| GENE 66 66256 - 66357 113 33 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLFVAKIIFQWYSNNGISLSVIVAFLEYFMKGE >gi|307679190|gb|GL457057.1| GENE 67 66360 - 66509 247 49 aa, chain + ## HITS:1 COG:no KEGG:EF1947 NR:ns ## KEGG: EF1947 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 49 1 49 49 79 100.0 4e-14 MTYKVKNIQYRIQLDTDKNIFIVFDAKNESKTATGHTIEEAIAHLKQLN >gi|307679190|gb|GL457057.1| GENE 68 66660 - 67046 299 128 aa, chain + ## HITS:1 COG:lin0899 KEGG:ns NR:ns ## COG: lin0899 COG5646 # Protein_GI_number: 16799972 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 2 110 8 116 130 100 52.0 9e-22 MTIIANYIRQQSQHQTQLTEIYQAILAVVPQETTEKIAYGMPTFYLNGNLVHFAAAKQHL GFYPTPSAIQRFSKELRPFKTSKGAIQFPYTQELPLSLIQEIVKFRVQENMKSGGGKKKN IFFFSLAS >gi|307679190|gb|GL457057.1| GENE 69 67136 - 67486 392 116 aa, chain - ## HITS:1 COG:lin0147 KEGG:ns NR:ns ## COG: lin0147 COG4898 # Protein_GI_number: 16799224 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 115 1 115 116 160 73.0 4e-40 MTKPKIYTMTFASVYPLYIQKAERKNRTQAEVDEIIYWLTGYDEKGLQQQLAQKVTMETF FEEAPNFNENAQLIKGVICGYRVEEIEDPLMQKIRYLDKLIDELAKGKAMEKILRT >gi|307679190|gb|GL457057.1| GENE 70 67560 - 68564 1238 334 aa, chain - ## HITS:1 COG:lin2106 KEGG:ns NR:ns ## COG: lin2106 COG2222 # Protein_GI_number: 16801172 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted phosphosugar isomerases # Organism: Listeria innocua # 1 334 1 331 331 407 56.0 1e-113 MLKFNEEQQIKDIRGALALRSDVEKVVDQVWTKGFDAVYYLGIGGTYASAMQAVTYANGK SNLPIYVQHAAEYYTTGNKRLTEKSFVILSSVTGTTQEVVQAVQEIKKVGATLFGFIDAK DSLLADLCDYVVTYPAPGTEQIKFFMVADRLMQKNNEFTDYENYYQELEEYLPTGLAEAE KSADAFGLAFAEKHRHDSIHYFIGAGNQWGAVYSYAMCYWEEQSWLRSKSIHAAEFLHGT LEIVDETTPVTLFIGEDEQRPLAERVAKLLPKICANYTIIDSKAYELPGISEKYRGRVVS FLLMHAVTQRIDAHVEKLNCHPLEIRRYYRQFDY >gi|307679190|gb|GL457057.1| GENE 71 68558 - 69634 905 358 aa, chain - ## HITS:1 COG:lin0034 KEGG:ns NR:ns ## COG: lin0034 COG0449 # Protein_GI_number: 16799113 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Listeria innocua # 3 348 4 354 361 298 44.0 1e-80 MKTMLDYINEEQAALTQILNQFQLTDTDVSKVTHCLILATGSSHNACQAAKVYLEEVAPI YVEIQEPFNFAHYGKVDDRFDLVVAVSQSGKSASTIDAIAKIKNQTSVKTVALTSDVTSP ITEVVDEVLDLKMGLETVGFVTKGYTATLLNLFLFGLKLGYQKHQLTKVEVEEELAKLAK AIQEIDSVIYKTEQFWQKTKKELTEGTRFIAIGYGPNIGTAKEFDTKFTETVRLPSQGFE VEAYMHGPYLEADTTHLLFFIENQSPIQARSQALKNYLASYVGQCYTITTRSTRASNTLG LASDVEEKISPLLLVIPFQYLAYQVATSKGIDLSQRIFDDFDCVLKSKIAKKEGNQPC >gi|307679190|gb|GL457057.1| GENE 72 69645 - 70475 1000 276 aa, chain - ## HITS:1 COG:STM4538 KEGG:ns NR:ns ## COG: STM4538 COG3716 # Protein_GI_number: 16767782 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Salmonella typhimurium LT2 # 6 276 9 278 278 377 69.0 1e-104 MTKTSKTKTENLITKKELNQVFWRSFQMEFSWNYERQMNMAYVYAMIPILKKLYPQKEEM AAALKRHLAFFNTTPHIVTFILGINAAMEEENVLDENFEVGTIDSIKTSLMGPLAGLGDS FFWGTLRLIATGVGTSLALQGNVLGPILFLLIFNVPHVIVRYLLNRWGYKLGTGFLKKIQ ANGMMESLTLGASIIGLMVVGAMTASMIDLTIPITISGSGKNAVTVQSIFDDIMPKLLPL ASFGFVFYLLKKEVKPLAILGGMAIVGILGSLIGLF >gi|307679190|gb|GL457057.1| GENE 73 70459 - 71250 845 263 aa, chain - ## HITS:1 COG:STM4537 KEGG:ns NR:ns ## COG: STM4537 COG3715 # Protein_GI_number: 16767781 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Salmonella typhimurium LT2 # 4 263 3 259 259 312 71.0 4e-85 MIGQAILLGCIAFIAQSEYALGTSLLSRPIVTGLFVGIVLGDVKTGVIMGATLELAFIGS FSVGASIPPDVVTGGILGTAFAITAGAGTETALVLGLPIATLTLILKNIYLGLLIPIMSQ KADQYAEEGAYKGVERMHLLAGFGLSFMLALIVTISFTVGSNTIKGLLDLIPEFIQHGLS VATGIIPALGFAMLARLLINKQVAPYFFLGFVLMAYFKLPVTGVAILGAITAVIVVNIMN YAKGKNETIQTTSGEVIDDDEDF >gi|307679190|gb|GL457057.1| GENE 74 71266 - 71466 180 66 aa, chain - ## HITS:1 COG:STM4536 KEGG:ns NR:ns ## COG: STM4536 COG3444 # Protein_GI_number: 16767780 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Salmonella typhimurium LT2 # 1 59 91 149 153 69 57.0 2e-12 MATAYPEIKEINLGGMKVRENTRNISKAINITPDEEKMVKELVANGCEVEIRQVPNDKKV AALNVL >gi|307679190|gb|GL457057.1| GENE 75 71611 - 71736 234 41 aa, chain - ## HITS:1 COG:STM4536 KEGG:ns NR:ns ## COG: STM4536 COG3444 # Protein_GI_number: 16767780 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Salmonella typhimurium LT2 # 1 41 1 41 153 73 80.0 6e-14 MIKLLRVDHRLLHGQVAFSWTQGLGADCILIANDDVPKNDI >gi|307679190|gb|GL457057.1| GENE 76 71748 - 72167 508 139 aa, chain - ## HITS:1 COG:STM4535 KEGG:ns NR:ns ## COG: STM4535 COG2893 # Protein_GI_number: 16767779 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Salmonella typhimurium LT2 # 1 128 1 128 140 95 36.0 3e-20 MERKIILATHGNFAAGIQTSLALICGETKNVECLCAYMEQPYDLAKTVKDILKNNQQNEL IVITDLFGGSVNNEFFNYVGKQAMHLISGLNLATLIEIYTQINTVDSLVDLVKRAVENGQ ESLCYCNELSSKEILEEEF >gi|307679190|gb|GL457057.1| GENE 77 72239 - 75010 2287 923 aa, chain - ## HITS:1 COG:STM4534_1 KEGG:ns NR:ns ## COG: STM4534_1 COG1221 # Protein_GI_number: 16767778 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Salmonella typhimurium LT2 # 1 454 1 458 460 421 48.0 1e-117 MLKMQIVDYLRNQTAFFEPSLVSEIFTASNIATTFSIKRNTASHYLNQLNEEGILVKINT RPVYFFHKEAFQQQNYLLKRTVYQSFQEMIDEQPVFDRKSDFFQSVIGYRGSLAQTIEQL KIAALYPGGGLPVLITGESGTGKSFLASLYYQFCLSKELLDDSAPFVTVNCAQYANNPEL LTSQLFGHLKGAFTGADSDKIGAFQSAEGGVLFLDEVHRLSPEGQEKLFTFLDQGIIYRM GETNRPIPVTCRLCFATTEEISSTFLTTFLRRIPIQIKIPSLAERTQAERKQLIMRAFYE EQQAIQKAVTITPQVIQLLENHHYVGNVGELRNNIKIITARSFAANLDKRVIPITLHDLP KEFLDQSIKLAPNENELPIRLDEQTNLISLLEETELAQRRIIQSYERILRLYVSHHHHLS TANNDISKEIERLFDDLLFEKKREKNHEMLLFITQNIRQLLETIESSYQIRFNGSLVYAL STYLFQRRCIDWFPEKEPTTVIDELLTEVQTKLATSYGYAEQLLTLVKRSLDIELSQMDR IIVTIYLHYSGSVKESHYPKAVIVAHGYATASSIANVANRLLNVPIFQSFDMPLDVTPKK ISEHLIHYMERQETRNGLVILFDMGSLKEIYQYFPAEEEGPFLLMNNVTTSLALSIGEAI KDEVSFEELPQKALTVHPNEWEIILPENKTERVILTTCSTGIGTAVKIRDLLEKSLPAEA QLKIIPCEYNQLRNAESIKESFPEYEIVGIIGTNNPSSNDLPYISLEELIAGKGITTLLE WTKRELTKDMLSYVNHELIRNFSLDRVIQSVTILDTEKIIRQVEVFLIQLEERWQQTIQN DRKLAVYVHVSCLIERLIRNEPIENYNGAEQLKQCQRTVLQELKEAFSVIEKVYSVNIPE SELFYVYDVLFGKTEFNNAESDF >gi|307679190|gb|GL457057.1| GENE 78 75581 - 76942 1174 453 aa, chain - ## HITS:1 COG:lin2806 KEGG:ns NR:ns ## COG: lin2806 COG0232 # Protein_GI_number: 16801867 # Func_class: F Nucleotide transport and metabolism # Function: dGTP triphosphohydrolase # Organism: Listeria innocua # 3 451 1 461 465 277 36.0 2e-74 MKMNWRQLVGTYRISDNGKQYQNDWLNKQVDLATELRKSLDSDYRRVIKSDAFRRLQDKT QVFPLERNDFVRTRLTHSLEVAMHSRDILRLVISQLNERNIEVMELSECYRLLETAALIH DIGNPPFGHFGEEAIRIWFEKNGPLYACWSDFSEQQQNDFLNFEGNAQTIRLLTKLHHDN GTSKAGMKLTATTLDTVIKYTASSDQLNKQQLLSKKVGYFYSEKQVFNAIKFATGTQNKR HPLVFLLEASDDIAYTFSDIEDAYNYGLYSYQDLKQFVDGQTGTKKFLMLEKDKTEEATL QEFLRKTQRAVCQSVAKNFANHYDLIMRGIYHNEIIIEDCDEVKCFQALKNFSRVYVFQT KTILDQEVLGFNIINRLLDEFVPVVLKYEKVSMNKYEERIFNNISESAKALYRREAKNAT EAEKDYYRLKMAVDFVCNMTDGYAKKVYDTLFT >gi|307679190|gb|GL457057.1| GENE 79 76959 - 77783 667 274 aa, chain - ## HITS:1 COG:no KEGG:EF1959 NR:ns ## KEGG: EF1959 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 274 1 274 274 542 99.0 1e-153 MSNGKKIFISHSSKDQEYVDAFIQLLKKFGFRTQDIFYSSAIETGVQPGELIFDTIKREL TNQPVMLYFLSDHYYQSIPCLNEMGASWMLSDKHYPIALNNFSMKDMKGVISSERLAIAF NDKTSTNEINCLLKKLSHDTDVQAEPDFELNVEKNIQPFQNKLTQLIRQASYLKPDEKGY FETTLSTHRPVYGTAKGVYDCFKLPSLIEPKSLGLDTLSEDESHWLFFFLTWGTFQEGEK VRFKLKKDKAYNNREFSDIGKCKNIYVSYLEKVE >gi|307679190|gb|GL457057.1| GENE 80 78137 - 79435 1740 432 aa, chain - ## HITS:1 COG:SP1128 KEGG:ns NR:ns ## COG: SP1128 COG0148 # Protein_GI_number: 15900994 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Streptococcus pneumoniae TIGR4 # 1 430 1 433 434 667 82.0 0 MSIITDIYAREVLDSRGNPTIEVEVYTESGAFGRGMVPSGASTGEYEAVELRDGDKARYL GKGVTKAVDNVNNIIAEAIIGYDVRDQMAIDKAMIDLDGTPNKGKLGANAILGVSIAVAR AAADYLEVPLYHYLGGFNTKVLPTPMMNIINGGSHADNSIDFQEFMIMPVGAPTFKEALR MGAEVFHALASILKGRGLATSVGDEGGFAPNLGSNEEGFEVIIEAIEKAGYVPGKDVVLA MDAASSEFYDKEKGVYVLADSGEGEKTTEEMIAFYEELVSKYPIISIEDGLDENDWDGFK KLTEVLGDKVQLVGDDLFVTNTTKLAEGIEKGIANSILIKVNQIGTLTETFEAIEMAKEA GYTAVVSHRSGETEDSTISDIAVATNAGQIKTGSLSRTDRIAKYNQLLRIEDQLGDVAEY KGLKSFYNLKNK >gi|307679190|gb|GL457057.1| GENE 81 79567 - 80322 918 251 aa, chain - ## HITS:1 COG:L0006 KEGG:ns NR:ns ## COG: L0006 COG0149 # Protein_GI_number: 15673116 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Lactococcus lactis # 2 251 3 252 252 385 80.0 1e-107 MRKPIIAGNWKMNKTLSEAQSFAEAVKNAVPSNDVVDAVIGSPALFLAPLAWNLKDSEVK LAAQNCYWENAGAFTGENSPAAIADLGVNYVIIGHSERREYFHETDEDINKKAKAIFANG MTPIFCCGETLETYEAGKTAEWIEGQITNGLVGLSNEQVASMVIAYEPIWAIGTGKSADA NIADEICGVVRSTVEKLYGKEVSEAVRIQYGGSVKPENIAEYMAKENVDGALVGGASLEA DSFLALLDAVK >gi|307679190|gb|GL457057.1| GENE 82 80371 - 81564 1521 397 aa, chain - ## HITS:1 COG:lin2552 KEGG:ns NR:ns ## COG: lin2552 COG0126 # Protein_GI_number: 16801614 # Func_class: G Carbohydrate transport and metabolism # Function: 3-phosphoglycerate kinase # Organism: Listeria innocua # 1 397 1 396 396 592 79.0 1e-169 MAKKTIKDVDLKDKKVLVRVDFNVPLKDGVITNDNRIVAALPTIKYVIENGGKAILFSHL GRVKTEEDKAGKSLKPVAERLSELLGQPVTFVPETRGKELEDAVNNMKDGDVLVFENTRF EDVDGKKESGNDAELGKYWASLGDVFVNDAFGTAHRAHASNVGIASTGIPTVAGFLMEKE IKFIGEAVENPKRPFVAILGGAKVSDKIAVIENLIEKADKILIGGGMAYTFMKAQGYSVG LSLLEEDKVDLAKSLMEKAGDKLVLPVDTVVSKEFSNDAPFHTVPSTEIPDDEEGLDIGE KTIELFANELQGAKTVVWNGPMGVFEMSNFAKGTIGVCEAIANLEDATTIIGGGDSAAAA IQLGYENKFSHISTGGGASLELLEGKTLPGLASINDK >gi|307679190|gb|GL457057.1| GENE 83 81691 - 82692 1331 333 aa, chain - ## HITS:1 COG:lin2553 KEGG:ns NR:ns ## COG: lin2553 COG0057 # Protein_GI_number: 16801615 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Listeria innocua # 1 333 1 334 336 549 83.0 1e-156 MTVKVGINGFGRIGRLAFRRIQDVEGIEVVAINDLTDAKMLAHLLKYDTTQGRFNGTVEV HEGSFNVNGKEIKVLANRNPEELPWGELGVDIVLECTGFFTSKEAAEKHLTAGAKRVVIS APGGNDVPTIVYNTNHETLTGEETVISGASCTTNCLAPMAKALHDNFGVVEGLMTTIHAY TGDQMTLDGPHPKGDFRRARAAAANIVPNSTGAAKAIGLVIPELNGKLDGAAQRVPVATG SLTELVTVLDKEVTVDEVNAVMEKAANESYGYNTDEIVSSDIVGMTYGSLFDATQTKVMT VGDKQLVKTVAWYDNEMSYTAQLVRTLEYFANL >gi|307679190|gb|GL457057.1| GENE 84 82732 - 83769 1026 345 aa, chain - ## HITS:1 COG:lin2554 KEGG:ns NR:ns ## COG: lin2554 COG2390 # Protein_GI_number: 16801616 # Func_class: K Transcription # Function: Transcriptional regulator, contains sigma factor-related N-terminal domain # Organism: Listeria innocua # 13 342 13 342 348 325 50.0 8e-89 MLKEFKMIEAVAPDMLDVLQERFQILRNIYWMQPIGRRSLSETMGITERVLRTETDVLKQ LNLIEPSKSGMTLTERGLEVYQGLELVMNQLLGMHQIEKEMTQYFGIQRCIVVAGDSDIQ KKVLSDFGDVLTNTLNLLLPNGENTIAVMGGTTMAMVAENMGSLETEKRHNLFVPARGGI GEAVSVQANSISAVMANKTGGNYRALYVPEQLSRETYNSLLQEPSIQEVLTLISHANCVV HSIGRALHMAARRKMSDDEMVMLKQKNAVAESFGYFFDEEGKVVYKIPRIGLQLKNLQEI PYVVAIAGGKTKAKAIRAYMKNAPKQTWLITDEAAANEILKGVTL >gi|307679190|gb|GL457057.1| GENE 85 84189 - 85067 926 292 aa, chain - ## HITS:1 COG:SP2113 KEGG:ns NR:ns ## COG: SP2113 COG1284 # Protein_GI_number: 15901928 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 3 290 25 312 313 320 52.0 2e-87 MKKIYDGLPVHDYTTKFSVSIVYAILASIAMNFFYQPGNIYSSGLTGLAQILTTLSTKIV GFNVPVSITLYLLNVPLFFIAWKKIGKKFTIFTFITVTLTSLFMHIVPQTVMTQDPIICA IFGGAISGSGIGFVLKNGVSSGGLDILSITIRKKTGRSVGSISIYFNALIVFVAGYLFGW QYMFYSALSIFVSGKVTDAVYTKQKKMQVMIVTKNPDRVVDEIQKKMRRGITIIHEAEGA YRHDRQTVLLTIVTRFELPSLEAAMKESDPNAFVSISDNVKILGRFYEEDYK >gi|307679190|gb|GL457057.1| GENE 86 85210 - 85779 830 189 aa, chain - ## HITS:1 COG:L86338 KEGG:ns NR:ns ## COG: L86338 COG4475 # Protein_GI_number: 15672471 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 3 182 1 180 180 204 60.0 1e-52 MTIDEKMLKEQLVTITEEVITAGNLQKGDLFVLGCTTSEVVGGVIGKNSSAEVGQWIVST LIEQLDKKGISLAVQGCEHINRALAMERRVAEEKGFEIVSVVPQLHAGGSCSVAAFEKFD EPVEVEHIVAQAGIDIGDTSIGMHVKHVQVPLRLSIRTLGAAHVTALYSRPKYIGGPRAH YETTQERNR >gi|307679190|gb|GL457057.1| GENE 87 85776 - 86282 674 168 aa, chain - ## HITS:1 COG:SP1597 KEGG:ns NR:ns ## COG: SP1597 COG4720 # Protein_GI_number: 15901437 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 2 154 6 152 153 105 43.0 5e-23 MTRKISLYAVITALTVAVSMVFIIPVPATNGFVTLADAGIYIASLLFGPIGGLTVGALSG GLIDLLSGYPQWFVFSLLIHGGQGWLAGHFFNKNKKMQTLGLLLASLLMISGYALATSWL YGVGAGIASLPGNIIQSLFGVIVALPLSQTLKRVLPKNGRLEERRMNK >gi|307679190|gb|GL457057.1| GENE 88 86266 - 87081 694 271 aa, chain - ## HITS:1 COG:L0202 KEGG:ns NR:ns ## COG: L0202 COG0351 # Protein_GI_number: 15672469 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Lactococcus lactis # 2 241 8 249 262 182 40.0 6e-46 MTKIILTIGGSDPFSGGGIQTDLKTFENHQVFGLSTLTCLATAPKNHFQIHDLETSLVKE QLASIPAGSLDGIKIGLIHSEESMLQIATFLKKHAGLPVVLDPVLAFKETTSVYEKRYMQ LLIEKLFPFATIITPNLKEAELLIGRKLTTVEEVQQAAEELNSLGAATVVIKGGNRWLGQ EARDFFYDGQQHIQLVKEKVMAHTIDGAGCSFASAIGANLVKGYPLIEAVDLAKTYVHEA IVSGVQLNAAFGSVWHEGLLAGGVADNDKKN >gi|307679190|gb|GL457057.1| GENE 89 87252 - 89021 2360 589 aa, chain - ## HITS:1 COG:lin1554 KEGG:ns NR:ns ## COG: lin1554 COG0173 # Protein_GI_number: 16800622 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl-tRNA synthetase # Organism: Listeria innocua # 1 583 1 584 591 803 67.0 0 MAKRTTYCGNVSAEFIEKEVVLKGWVQKRRDLGGVIFIDLRDREGIVQVVFNPEKSKEAW EIADKCRSEYVIEVKGQVVYRDKEAINPKMKTGEFEVMATDITILNTAKTTPFTIEDDNN VNDELRMKYRYLDLRRPSMTNNIKLRHQVTKTIRHYLDNHDFLDIETPYLGKSTPEGARD YLVPSRVHAGHFYALPQSPQLFKQLLMGAGFDRYYQIVRCFRDEDLRGDRQPEFTQIDIE TTFLTPEEIQTYTENMLAEVMKETKGIEISVPFPRMSYDEAMARYGSDKPDTRFAMELID VADVVKDVDFKVFQAALENGGHVKALNAKGAADKYSRKDMDNLGKYVSQFGAKGLAWLKV EEDGLKGPIAKFLTEVSDELIAATNAEVGDILMFGADKPEIVAAALGAVRTRLGKELGLI DESKFNFLWIVDWPLFEYDEEAGRYVSAHHPFTQPKAEDVARLATDPASVYAEAYDVVLN GYELGGGSLRIHTRELQEKMFETLGFTKEEAQDQFGFLLDALDYGFPPHGGIALGLDRLA MLLAGEENIREVIAFPKNGKAIDPMNNAPSLVSPLQLFELNIDVTAIDE >gi|307679190|gb|GL457057.1| GENE 90 89039 - 90340 1711 433 aa, chain - ## HITS:1 COG:SP2121 KEGG:ns NR:ns ## COG: SP2121 COG0124 # Protein_GI_number: 15901936 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Histidyl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 426 1 424 429 553 64.0 1e-157 MSYQKPKGTNDILPGTSEKWQFVEETARLIFKDYQYQEIRTPIFEHYEVISRSVGDTTDI VSKEMYDFYDKGDRHVTLRPEGTAPIVRAFVENKLYGPEYTKPYKTYYMGPMFRYERPQA GRLRQFHQIGVEAFGSENPALDVEIMAMALDFFKQLGIQQIKLVINSLGDKETRATYRQA LIDYLEPHMAELSEDSQRRLHENPLRVLDSKDKKDKVIVAEAPSILDYLNEPSKAHFEAV TDMLDLLEIPYEIDSNMVRGLDYYTHTIFEIMSEAPKMGAQSTICAGGRYNGLVEELGGP DTPGFGFGMGIERVLLTMEAEEVVIPALSELDAYVVGIGSETNVAALQLVQSIRNFGFSA DRDYMNRKPKAQFKTADKLQAKLVLTIGENELNEGIVNVKSMATREEKAFPLSAIHDSFD EVYDEMMTKMIEE >gi|307679190|gb|GL457057.1| GENE 91 90698 - 91144 596 148 aa, chain - ## HITS:1 COG:SPy1980 KEGG:ns NR:ns ## COG: SPy1980 COG1490 # Protein_GI_number: 15675771 # Func_class: J Translation, ribosomal structure and biogenesis # Function: D-Tyr-tRNAtyr deacylase # Organism: Streptococcus pyogenes M1 GAS # 1 146 1 145 147 173 60.0 9e-44 MKVVIQRVSQAQVAIEEQIVGQIKQGFMVLVGIHQEDTPEDVAYVVGKISKLRVFEDDEG KMNRSIQEIEGSILSISQFTLYAKTKKGNRPSFIEVARPDVAIPLYELFNQQLEAEGIEV ATGEFGADMQVSLTNDGPVTIVIDTREK >gi|307679190|gb|GL457057.1| GENE 92 91168 - 93381 2574 737 aa, chain - ## HITS:1 COG:lin1558 KEGG:ns NR:ns ## COG: lin1558 COG0317 # Protein_GI_number: 16800626 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Listeria innocua # 1 734 1 735 738 981 66.0 0 MPKEEILTGPAVIKIVSTYMGPEHVELVQKALTYAEKAHEGQVRQSGEPYIIHPIQVAGI LAELHMDPHTVATGFLHDVVEDTDVTLDDLKEEFGEDIAMLVDGVTKLGKIKYKSHEEQL AENHRKMLLAMAQDLRVIMVKLADRLHNMRTLKHLREDKQRRIAQETLEIYAPLAHRLGI SRIKWELEDTALRYINPNQYYRIVNLMQSKRDEREAYVAEAVEDIRLATEDLEIYAEIYG RPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVDSIKDCYAVLGAIHTRWTPMPGRFKDYI AMPKANMYQSIHTTVIGPKGNPVEVQIRTHEMHQIAEFGVAAHWAYKEGKAEKIETDELT KQVDWFHEIIELQDESYDASEFMQGVKEDIFSDKVYVFTPSGDVTELPKGSGPLDFAYSI HTEIGNKTTGAKVNGKMVQLDYVLKNGDIIEVLTSPNSFGPSRDWLKMVKTSKAKNKIKR FFKEQDREDNIIKGHDAVIKYMTEIGFTPKEFLTKNKMAEVLDKFKFQTEDDLFAAVGYG EVSAQVVCNRLTEKERREQELERQRQEAEELLNQPAKKESEKMKVRHEGGIVIQGVDNLL IRLSRCCNPVPGDEIVGYITKGRGVSIHRADCPNVQHQEELAQRLIEVEWEDTEHSRKEY AADLEIYGYDRSGLLSDVLQVISSMTKNLVGVEARPSKDKMAQIHVTVKIQNLSHLKTIV DKIKSVPDVYSVRRTNG >gi|307679190|gb|GL457057.1| GENE 93 93596 - 94348 698 250 aa, chain - ## HITS:1 COG:lin1507 KEGG:ns NR:ns ## COG: lin1507 COG1385 # Protein_GI_number: 16800575 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 1 248 1 249 255 236 49.0 4e-62 MQRYFMKEDYQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSV YFKEISKEEMDKELPIEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHK KRAAKEKRLQKIATEAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEK SQLAQVLSTCQPGACLCVLFGPEGGFAPQEIEQFLQAGAKLCGLGPRILRAETAPLYLLS AVSYQMELLN >gi|307679190|gb|GL457057.1| GENE 94 94350 - 95297 1600 315 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227519318|ref|ZP_03949367.1| ribosomal protein L11 methyltransferase [Enterococcus faecalis TX0104] # 1 315 1 315 315 620 100 1e-176 MKWTEVKVETASEAVEAISNIMMEAGASGVAIEDALDIENFESDLYGEILDKEQFTHIKE GAIVMAYFPETTFLPEILPFMKENILRLPEYGLSIGKNEMTISEVAESDWATAWKKYYHP VRVTRFLTIVPSWEAYHAQDEAEKIITLDPGMAFGTGTHPTTRLTLQALETVLRGGETVL DVGTGSGVLSIASRYLGAKDVYAYDLDEVAVAAAKENMDLNPIAADVHVSANDLLKGIDH SADVIVANILADIIVLMIEDAWRLLKQDGTFIISGIIEDKKAMVLEALTKVGFVVDQLFN QGDWYAIILKKPEEE >gi|307679190|gb|GL457057.1| GENE 95 95313 - 95798 720 161 aa, chain - ## HITS:1 COG:no KEGG:EF1977 NR:ns ## KEGG: EF1977 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 161 1 161 161 282 100.0 3e-75 MKKATMLTYLEEQLEKHLGDYEVGLDWDRKNHTIEVIVRLYAENNEQVAIDDVDGTLSEE EFIEFEDGLLFYNPQKSVVDDEEYLVTIPYEGKKGLRKAVLDGFIHYLKVVLDEGQSDLL DFLSDETAEVFELHWEPADFEAMIKKVAETEKEQWIAYPSY >gi|307679190|gb|GL457057.1| GENE 96 95755 - 96432 836 225 aa, chain - ## HITS:1 COG:SA2134 KEGG:ns NR:ns ## COG: SA2134 COG2094 # Protein_GI_number: 15927924 # Func_class: L Replication, recombination and repair # Function: 3-methyladenine DNA glycosylase # Organism: Staphylococcus aureus N315 # 8 198 3 192 202 186 46.0 2e-47 MKETINIFNTKTTEEVAQYLLGMYLEHETATGVLGGYIVDAEAYLGPDDEAAHSFGLRKT PRLQAMYDKPGTIYLYTMHTHLILNMVTQEQGKPQGVMIRAIEPVEGVDKMIENRQGRQG VELTNGPGKLVAALGIDKQLYGQSIFSSSLRLVPEKRKFPKKIEALPRIGIPNKGRWTEL PLRYVVAGNPYISKQKRTAVDQIDFGWKDEENEKSNNAHILRGTT >gi|307679190|gb|GL457057.1| GENE 97 96561 - 97838 1499 425 aa, chain + ## HITS:1 COG:lin1549 KEGG:ns NR:ns ## COG: lin1549 COG2256 # Protein_GI_number: 16800617 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Listeria innocua # 3 425 4 426 427 595 69.0 1e-170 MQQPLAYRMRPRHLDEVVGQQHLVGPGKIIRRMVEAKMLSSMILYGPPGTGKTSIASAIA GSTNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLENGRI IMIGATTENPYITINPAIRSRTQIFEVKPLTETDIQQAIQEALTDSTRGLGDYPVHLEEK ALQHLTRATNGDLRSALNGLELAVKSTPKNEQGEIKITLPIIEECVQRKALTHDKDGDAH YDVISAFQKSIRGSDVDAALHYLGRLVEAGDLPIICRRLMVIAYEDIGLGNPAAAARTVT AVQAAEKLGFPEARIPLASVVIDLCLSPKSNSAVTAIDAALADIRQGSVGDVPDHLRDAH YAGAKELNRGIGYQYPHNFENGWVNQQYLPDKLKEARYYEPIDIGKYEQALHQQLKRIQE WKQKK >gi|307679190|gb|GL457057.1| GENE 98 97922 - 98125 95 67 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYALSFHCVDRTFLLISRDPACIKVGNMPFLLVVQYCDRGTHLLILRVQYSRTITGIDGF YHFYEDF >gi|307679190|gb|GL457057.1| GENE 99 98166 - 98444 289 92 aa, chain + ## HITS:1 COG:no KEGG:EF1980 NR:ns ## KEGG: EF1980 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 92 19 110 110 114 100.0 2e-24 MIRILVLLLAVVTGVASYYLMKKSAAFLPLLKKETATESQQFIERFGRYYLIIAILGVLA AIFNRPLLSIGFIFFVLLLSTLFSLTFAKKMS >gi|307679190|gb|GL457057.1| GENE 100 98760 - 99233 688 157 aa, chain + ## HITS:1 COG:lin1615 KEGG:ns NR:ns ## COG: lin1615 COG0589 # Protein_GI_number: 16800683 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Listeria innocua # 1 147 1 147 152 161 57.0 4e-40 MLQQYQKIMIAIDGSDEADLAFKKAVNVAKRNDAELLLAHVVDTRSFQSVSSFDGALAEE AMSMAKETLDTYQQQAVDMGQTKVSSVLAYGSPKNIIAKELPKEYNIDLIMLGATGLNAV ERLFIGSVSESVIRNASCDVLVVRTDLDNKLPKNEEK >gi|307679190|gb|GL457057.1| GENE 101 99345 - 100532 1536 395 aa, chain - ## HITS:1 COG:SPy0109 KEGG:ns NR:ns ## COG: SPy0109 COG0282 # Protein_GI_number: 15674332 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Streptococcus pyogenes M1 GAS # 1 395 1 395 398 507 65.0 1e-143 MSKTIAINAGSSSLKWQLYQMPNEEVIAKGIVERIGLKDSIFTIKYGEGQKYEVIVDIDN HEVAVKMLLDQLIDLNILGSYDEITGVGHRVVAGGEEFKDSVVITDEVLEKIEALSELAP LHNPANAMGIKAFKHILPEIISVAVFDTSFHTTMPEHNYLYSVPREYYEKFAARKYGAHG TSHRYVSQRAAEMLGRPIEDLKIITCHLGNGASITAVDGGKSVDTSMGFTPLAGVTMGTR SGDVDASLLPYLMTKLGLTDVQDMVDILNKKSGLLGLTNGLSSDMRDIQSNLDKPEVQTA YNIFIDRIRKYIGSYVTVMNGVDAIVFTAGIGENAVGVRKDIIDGMTWFGCEIDDDKNNV HGEEAVISTDDSKIKLLLVPTDEELMIARDVERLK >gi|307679190|gb|GL457057.1| GENE 102 100557 - 101528 1015 323 aa, chain - ## HITS:1 COG:lin1617 KEGG:ns NR:ns ## COG: lin1617 COG0827 # Protein_GI_number: 16800685 # Func_class: L Replication, recombination and repair # Function: Adenine-specific DNA methylase # Organism: Listeria innocua # 7 317 19 327 332 240 43.0 3e-63 MEQAIQLLQQSLDTSFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYNTIKKIDL APEDVRRLSQLLLLKGTRKEQLQANHQLTPDGIGFLFVYLVEQLTNKSEPLKILDPASGM GNLLLTVLLNLETAGYKVSGYGVDIDETLLAVSSVNNAWSQANIQLFHQDGLQDLLLDPV DLALSDLPIGYYPNDERAKGFAAAAEEGHSYAHHLLMEQAMKYVKPAGFGLFLIPTNILE TEQSEFFKNWLTKNVYLQGMIQLPDELFKSEQSRKSILLVQNKGADAEQVKEVLLAKLAS LKDINKVTEFFKQFEAWKASNLK >gi|307679190|gb|GL457057.1| GENE 103 101693 - 102046 346 117 aa, chain - ## HITS:1 COG:no KEGG:EF1985 NR:ns ## KEGG: EF1985 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 117 1 117 117 158 94.0 6e-38 MRQKYSGNLLFTAMAFVYLMSFLALQLLEERQLTQKFTQATQEYYAGKSILHLFLADVKQ NRRKLKTEEKLMYEQVTLDYTYKNEQLRITVLLNKSGRKYQYQERVSHQKKAETMLE >gi|307679190|gb|GL457057.1| GENE 104 102046 - 102480 382 144 aa, chain - ## HITS:1 COG:lin1379 KEGG:ns NR:ns ## COG: lin1379 COG4940 # Protein_GI_number: 16800447 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Competence protein ComGF # Organism: Listeria innocua # 4 140 14 148 154 61 28.0 7e-10 MVNKKYAGFTMLECLVALVVLSCMCQLFQLMIQQSFIGNQYLKNNDSKSWHIFLIQLEKE CQKLVFQTGSAQEISFLDSETNKTISIQIKEDKIIKRVNGKGYQPLLIGIKNGQFKNEGQ SFTLEVTFTSGKTFDSFFPIKGEF >gi|307679190|gb|GL457057.1| GENE 105 102470 - 102871 116 133 aa, chain - ## HITS:1 COG:no KEGG:EF1987 NR:ns ## KEGG: EF1987 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 133 23 155 155 226 96.0 3e-58 MTKQLFNAYCMMFLFLKLLRNFRWGVANIRRKLTIYSGFILLESLVSFSIVCVVAGIFSL TITQLIQQNYQREQELTRTRLGYEAILFLEQTGDLRFKERIYQGETYRFSLMENEGRRIL KVTDSRGAILIGQ >gi|307679190|gb|GL457057.1| GENE 106 103174 - 103299 159 41 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKIIKHFMKPVEIFETLDDDIGMFLIISICTALIFTFFSK >gi|307679190|gb|GL457057.1| GENE 107 103596 - 104537 451 313 aa, chain - ## HITS:1 COG:STM0489 KEGG:ns NR:ns ## COG: STM0489 COG0276 # Protein_GI_number: 16763869 # Func_class: H Coenzyme transport and metabolism # Function: Protoheme ferro-lyase (ferrochelatase) # Organism: Salmonella typhimurium LT2 # 3 302 5 307 320 271 43.0 1e-72 MKRTGILLVNLGTPKDSSKTEVRKYLKTFLSDRRVIKIHPIIWKPILNGIILNIRPKKSA KLYQKICTENGFPLLEYTEKQMENLKNICPEVEVTIGMSYSEPSIETALDTLLSKEIEEL NVIPMYPQYSGTTVGSVFDSVMNYFIKSDRIVDIKFIRSFYNNPQYIGYFSKKINEALNE SPIDAIVFSYHGIPMSYVKDGDNYPEECTKTTKLIMDKLGDIPYYQTYQSKFGPSEWLKP ATDDTLKKLPLKGIKNILIVAPGFVVDCLETIEELEHENRNYFLENGGEFYKYVHPFNGD IEFAKLVKDIISL >gi|307679190|gb|GL457057.1| GENE 108 105281 - 105505 183 74 aa, chain - ## HITS:1 COG:no KEGG:EF1990 NR:ns ## KEGG: EF1990 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 73 1 73 73 117 97.0 1e-25 MGFGTWKEVIPSDKSKQFEEGQKVSFIYRKEIRSGIIAVLLINSAVINIIDSSKPKNKKE KTVISYEKLLSMYQ >gi|307679190|gb|GL457057.1| GENE 109 105604 - 105804 321 66 aa, chain - ## HITS:1 COG:L117090 KEGG:ns NR:ns ## COG: L117090 COG1278 # Protein_GI_number: 15672511 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Lactococcus lactis # 1 66 1 66 66 95 80.0 2e-20 MNNGTVKWFNSDKGFGFITGEDGNDVFAHFSAIQADGFKSLEEGQAVTFDIEEGQRGMQA VNIFKA >gi|307679190|gb|GL457057.1| GENE 110 106641 - 107942 1499 433 aa, chain - ## HITS:1 COG:SPy1006 KEGG:ns NR:ns ## COG: SPy1006 COG3757 # Protein_GI_number: 15675010 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Streptococcus pyogenes M1 GAS # 91 254 214 360 444 130 43.0 7e-30 MKKIVTLIIVALVAVTPLNVFAAKGDQGVDWAIYQGEQGRFGYAHDKFAIAQIGGYNASG IYEQYTYKTQVASAIAQGKRAHTYIWYDTWGNMDIAKTTMDYFLPRIQTPKNSIVALDFE HGALASVPDGYGGYVSSDAEKAANTETILYGMRRIKQAGYTPMYYSYKPFTLNHVNYQQI IKEFPNSLWIAAYPIDGVSPNPLYAYFPSMDGIGIWQFTSAYIAGGLDGNVDLTGITDSG YTDTNKPETDTPATDAGEEIEKTPNSDVKVGDTVKVKFNVDAWATGEAIPDWVKGNSYKV QEVTGSRVLLEGILSWISKGDIELLPDATTVPNKQPEATHVVQYGETLSSIAYQYGTNYQ TLAALNGLTNPNLIYPGQILKVNGSVVSNIYTVQYGDNLSSIAAKLGTTYQTLAALNGLA NPNLIYPGQTLSH >gi|307679190|gb|GL457057.1| GENE 111 107955 - 108335 261 126 aa, chain - ## HITS:1 COG:no KEGG:SEQ_0188 NR:ns ## KEGG: SEQ_0188 # Name: not_defined # Def: phage holin # Organism: S.equi_equi # Pathway: not_defined # 3 125 1 123 123 119 53.0 4e-26 MALFDFLERFVADPDYKAVYVLMLICIAMTIDFISGTIAAKINPEIEFKSKIGINGILRK VASIVLLLFFIPLAPLVPGGAGVGLLYVLYVGYLMMEIKSIFENYQKMGVVTELFEDFIK NLKNKK >gi|307679190|gb|GL457057.1| GENE 112 108346 - 108468 276 40 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256960151|ref|ZP_05564322.1| ## NR: gi|256960151|ref|ZP_05564322.1| predicted protein [Enterococcus faecalis Merz96] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis D6] conserved hypothetical protein [Enterococcus faecalis R712] conserved hypothetical protein [Enterococcus faecalis S613] phage uncharacterized protein, XkdX family [Enterococcus faecalis TX4248] phage uncharacterized protein, XkdX family [Enterococcus faecalis TX0470] phage uncharacterized protein, XkdX family [Enterococcus faecalis DAPTO 512] phage uncharacterized protein, XkdX family [Enterococcus faecalis TX0102] phage uncharacterized protein, XkdX family [Enterococcus faecalis DAPTO 516] predicted protein [Enterococcus faecalis Merz96] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis D6] conserved hypothetical protein [Enterococcus faecalis R712] conserved hypothetical protein [Enterococcus faecalis S613] phage uncharacterized protein, XkdX family [Enterococcus faecalis TX4248] phage uncharacterized protein, XkdX family [Enterococcus faecalis DAPTO 512] phage uncharacterized protein, XkdX family [Enterococcus faecalis TX0102] phage uncharacterized protein, XkdX family [Enterococcus faecalis DAPTO 516] phage uncharacterized protein, XkdX family [Enterococcus faecalis TX0470] phage uncharacterized protein, XkdX family [Enterococcus faecalis TX2137] phage uncharacterized protein, XkdX family [Enterococcus faecalis TX0017] phage uncharacterized protein, XkdX family [Enterococcus faecalis TX0017] phage uncharacterized protein, XkdX family [Enterococcus faecalis TX0027] phage uncharacterized protein, XkdX family [Enterococcus faecalis TX2141] phage uncharacterized protein, XkdX family [Enterococcus faecalis TX0043] phage uncharacterized protein, XkdX family [Enterococcus faecalis TX0645] phage uncharacterized XkdX family protein [Enterococcus faecalis 62] # 1 40 1 40 40 70 100.0 4e-11 MFTFDDIKMMYDWGCFTDEQVMEFVPLCITEKEAKEIVGK >gi|307679190|gb|GL457057.1| GENE 113 108470 - 108865 607 131 aa, chain - ## HITS:1 COG:no KEGG:MPTP_1399 NR:ns ## KEGG: MPTP_1399 # Name: not_defined # Def: hypothetical protein # Organism: M.plutonius # Pathway: not_defined # 1 115 1 115 124 99 44.0 6e-20 MKIWIENRIGYLEGYSTMEQPDNVELEVKKEPFDFMNWRYDGAQLIHDPENAPQPEPTPP TDIEVLQAENAELKQLNSKLMVNDVNLKKELSEVTKKADNFAQISAKSMLAINQLTNQVK EINEKLAEGVE >gi|307679190|gb|GL457057.1| GENE 114 108884 - 109336 507 150 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256617888|ref|ZP_05474734.1| ## NR: gi|256617888|ref|ZP_05474734.1| predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis D6] predicted protein [Enterococcus faecalis X98] hypothetical protein HMPREF9498_00262 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9504_00377 [Enterococcus faecalis TX0102] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis D6] predicted protein [Enterococcus faecalis X98] hypothetical protein HMPREF9498_00262 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9504_00377 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9494_02245 [Enterococcus faecalis TX2137] hypothetical protein HMPREF9500_00888 [Enterococcus faecalis TX0017] hypothetical protein HMPREF9495_02766 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9503_00339 [Enterococcus faecalis TX0043] # 1 150 1 150 150 293 100.0 4e-78 MELTRIYRGMENGAEAIEENFDSLEKLLNKLSETNILNVGKKVWSGAWYMGENQSINPSL PLDQCLSGWLFLYQPYNTSTSLGDNWDLNYVFVPKTHIVEFGGRAVVHHLETLNGAKYNK YIYISNTQILGHKNNNTASKTFVLTRVYAI >gi|307679190|gb|GL457057.1| GENE 115 109353 - 110084 825 243 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256617887|ref|ZP_05474733.1| ## NR: gi|256617887|ref|ZP_05474733.1| predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis D6] predicted protein [Enterococcus faecalis X98] hypothetical protein HMPREF9504_00376 [Enterococcus faecalis TX0102] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis D6] predicted protein [Enterococcus faecalis X98] hypothetical protein HMPREF9504_00376 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9494_02246 [Enterococcus faecalis TX2137] hypothetical protein HMPREF9495_02767 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9503_00338 [Enterococcus faecalis TX0043] hypothetical protein HMPREF9513_02074 [Enterococcus faecalis TX0645] # 1 243 4 246 246 461 99.0 1e-128 MAQEFKDTRPTNEPNTTVDYQDPTDVDEVQDEIKNGVIDPISQTFALWIRTKMYRRHVRE SLARMMEYTSVLFNKIKAISENTEKRQSKVEQRQTNLEERFKDVIANATTDSEVIDARSS ERLGNFKTLDERLEYFENIIASVIPVGFDVTIVHNLGAQPVVNVRTWTHGIGVLPLGTEP TGLFGGSASQSIQSTVRHVNSSECIVSIPLDYTTEFLPVKINEYKYLLIDEKNSRSIVFD LII >gi|307679190|gb|GL457057.1| GENE 116 110099 - 111544 1236 481 aa, chain - ## HITS:1 COG:no KEGG:lp_0675 NR:ns ## KEGG: lp_0675 # Name: not_defined # Def: prophage Lp1 protein 52, endolysin # Organism: L.plantarum # Pathway: not_defined # 1 395 1 387 624 215 36.0 4e-54 MYRVLLFDNPNRKNPKIVHEPYSYGEKIKDSEVYLSLNGLGISTFEFTFNINNKYYQKIE PIIHFIQILDVTRNKEIFYGRVAKITNKMEASGSFSQTLLAEDEKAFLYDSVQTYMKPTR MTVSAYLQKILDAHNKQVEAHKQFRLGEVNVVDNGDLLRGLGYQSTADTIKEKLLDRLGG TLTLRRVGNINYLDYLSNYGVNSETPLQLTKNLKSATRDIDISELFTRIVPVGQDIEDTS NTDIEVGTDFSRPKYTIEKVNGGKNYLDDEALIKKFGLNTGIVEFSNVKDPSILKRRGLQ WLKDQSLMLVTWTVEAIELGLLDKRYELITLGNSYKVDNQFIYAVERLQVIEKKFSILEP QKVTLTIGSKKKKLTDYQNEIKAIQSNLVNVKKFATAGVQNISELIKRQEEFDNDLSVQS SKVSSLEDLTSELSTTVTESTEAFKQLASDLTNTVESVGTAQTEMKKALDDLIKRVEKLE K >gi|307679190|gb|GL457057.1| GENE 117 111544 - 112266 533 240 aa, chain - ## HITS:1 COG:no KEGG:PEPE_0798 NR:ns ## KEGG: PEPE_0798 # Name: not_defined # Def: hypothetical protein # Organism: P.pentosaceus # Pathway: not_defined # 11 240 27 254 254 127 33.0 5e-28 MIEIVEYMAKGRFNSKEHGFYIIEHDAPSAEEVEIIEQIPFMQGQYDFSMLTGERIFSNR IVTVTFWRPNTPYEERKALEAKVKEELMMDGIDYIDDSWLRSGLRWYGKCKSVKAEDDSS SNSLTLTVEFDVYPFALRENISYSDVFDEDYFTDDSADNWTGYYIHGKREIFLINMGANA SSPTIKATSTMQLTTDDGTTIKVPKGESQDYFFKLKRGTNHLTIYGEGHISFFMSSEVMV >gi|307679190|gb|GL457057.1| GENE 118 112263 - 116717 4248 1484 aa, chain - ## HITS:1 COG:XF0730 KEGG:ns NR:ns ## COG: XF0730 COG5283 # Protein_GI_number: 15837332 # Func_class: S Function unknown # Function: Phage-related tail protein # Organism: Xylella fastidiosa 9a5c # 46 268 87 316 739 74 25.0 1e-12 MTQSKTVTAILTARDNNFTSAMNGAVSSLKKLNSNASDIPSNLNTVNGAMKSFGDKTASI GQSIEKVGGSMTKGITLPIAGAVGAVTTAAVKWESAFTGVKKTNDEMVDSNGKVIYSYDD LEKGLRDLAKELPTSHEEIAKVAEAAGQLGIKTDKVVGFTKTMIDMGESTNMSADTAATS LARFANITQMSQDKFSNLGSAIVDLGNNLATTESEITEMGLRLAGAGKQIGMTEGDIVGF AAALSSVGIEAEAGGSAFSRLMVQMQLATETGVEAFAPLKQAVAEQGVSWESFVHAVNWG GKELTAVSKQMGIPTSELKKMYKEASKASGSLEDFANVTGRTSEEFAQLFKSNPSQALIE FIQGLKDSEKHGISAIKVLDDMGITEVRLRDSLLRAANASDVFEGAVKRGNEAFNENTAL AEEAGKRYGTTESQLKILRGQLNDVAITFGGPLVAALNSAISAAKPMIEALANMAEAFAS ADPKTQEFILKMAALAASAGPVLKVFGKMTRFFGKTISTMFETAGNIDSKWQQFITKPIV NGSGSALQAVKGFVSKYKSNLAGLESAGVNVNVLTRFTTLGETISGLFPTLDTFRANLRA SQRQLNMLGEGNKVTNFFRSFSASLQLSNSKLAKFASVVINPVGSLRNLSSAAGKSGTVL SGLGVATSKAGGGFRTFAVTGIRSIASLTGAMLSNPITAILVAITATIVGVVQAWKSNFM NIQGYVKTAFSGIVKSFKSVLPSSASVTKTIKGLGNTFKWLGTGAIVGVTFAIAGFVDGL RTIVTVGKTVVNAIMAISNGVKGLWKRLKGDSKGADKAFKDMKKSLSDIEKDWDTMFSDS ALKKAAKSTEELGKKSKDTTKAISLNMEESSSSVENYSSKLDEAKQAMTELFSQQNGSTA GVETYFKNTLDLVTNLKEQQKKAVETYNKQIEAAEGKSEAEKQKIFANASSQYMKAVQTN NSDLLKVYTDYSNQLKNNKTVEGQELTEQQRATLQNQTNIIRDQLLQQNQQFVEAGMNKL ANKQALSEQEKEQTLTSLRTLGEIQAQQVQENNAQIQQLETQKNQAKTESEKAAFQNQIT QLQTQNAQIRQSELEQGAQLLSIISQNGANKIAVTADNLAQLKGVTDQQLLGIYQSYVNN GASIDQQMALLAGMLRQRGIDGSNGLVQGLQSNDPTKWANMSRADIVNTLQALPPDLFRN GQDGKNQLIDGLNSGKTQLNNVGKELMSSMNSGQSSQKSNSKKAAADNSSAAASGTRSKS NEHKNAGKSNAQQTNAGMNSEKGNAKNSGSQLGAATIQGYLTQLPPANNAGRSLGNAVSQ GAGSVDMSPVGSNMARGVASGIRASQGEAVAAMQNLVAAVNAEAQKKAKIKSPSRLLKYD VGVFLAQGVAAGIREDTSVAVQSAKDMISSIHQSITDSRLMKRSNAIEVKHSIDNTPMGK MVEILEEIRHLTVVMDTGQVVGALGSPMNLNLAEQQKQDGRYRS >gi|307679190|gb|GL457057.1| GENE 119 116704 - 117009 336 101 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256853520|ref|ZP_05558886.1| ## NR: gi|256853520|ref|ZP_05558886.1| predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis X98] hypothetical protein HMPREF9504_00372 [Enterococcus faecalis TX0102] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis X98] hypothetical protein HMPREF9504_00372 [Enterococcus faecalis TX0102] hypothetical protein HMPREF9501_02704 [Enterococcus faecalis TX0027] hypothetical protein HMPREF9495_02771 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9503_00334 [Enterococcus faecalis TX0043] hypothetical protein HMPREF9513_02078 [Enterococcus faecalis TX0645] # 1 101 1 101 101 134 100.0 2e-30 MTPYEFNLRIKAVNLRAINEERKLYVNALATRIFTTPDEKGQRYIFNEVKDVYDFEKLER DVRGEISQREVEKLSELEENARRLEQARKIVEERRKQRDTK >gi|307679190|gb|GL457057.1| GENE 120 117078 - 117476 515 132 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256853521|ref|ZP_05558887.1| ## NR: gi|256853521|ref|ZP_05558887.1| predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis T8] conserved hypothetical protein [Enterococcus faecalis TX2141] conserved hypothetical protein [Enterococcus faecalis TX0043] # 1 132 1 132 132 236 100.0 5e-61 MSTNVKPVATINGKKYPLIFGFKFLNEINALKPDVEEVDGFVQLVGGLQDGDAFAFQKLM HAALITYDDLTTKEIDDYLETSEEALTLFENFISFLEQAPLTALRTKKSLEAIKKIIAYM EQIQANQQETTA >gi|307679190|gb|GL457057.1| GENE 121 117539 - 117847 526 102 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256853522|ref|ZP_05558888.1| ## NR: gi|256853522|ref|ZP_05558888.1| predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis T8] conserved domain protein [Enterococcus faecalis TX2141] conserved domain protein [Enterococcus faecalis TX0043] # 1 102 1 102 102 183 100.0 4e-45 MAIIYRIYKGSEKVVEGASPLTITGLDAGAKVAAGTYHIVRVQDEKESEKVAIPAFTVLA GRSLENKPTEANTIPEIKEWLTAHGIDFTGKTTKTDLLALVP >gi|307679190|gb|GL457057.1| GENE 122 117850 - 118455 688 201 aa, chain - ## HITS:1 COG:no KEGG:LJ1428 NR:ns ## KEGG: LJ1428 # Name: not_defined # Def: Lj928 prophage protein # Organism: L.johnsonii # Pathway: not_defined # 1 174 1 175 189 114 40.0 3e-24 MEKAIQGKKIKLMFRLTRERATTAAKLLALEISHEYKSETKTDTQSTKDGNVPTSGMPSA SIEMEFLRTGTETYNMLKYAYRNGLEIDVWRINFDKKDPKTGKYEAEFGTGLLDSFGDSA ESDSNSSIKPTLVLNGDLVEGWATVDAENEELARAFFYDTVAGAEPEEPVEKYTPKTIEV PKVESVTPISDGAVVKVKEEE >gi|307679190|gb|GL457057.1| GENE 123 118474 - 118866 559 130 aa, chain - ## HITS:1 COG:no KEGG:LJ1429 NR:ns ## KEGG: LJ1429 # Name: not_defined # Def: Lj928 prophage protein # Organism: L.johnsonii # Pathway: not_defined # 5 127 2 124 125 69 26.0 5e-11 MTFKDPYSELYEALFVTLEQTGYETYGHLPDDDASYPFVFLGEQWSKDRQTKTRTLGSTN IMIHVYDHDDKRRELNQVLADVRKIVHELHQTKNFNWLVTESSTEVIYENTTNFGTSLAH GVLDITLEFE >gi|307679190|gb|GL457057.1| GENE 124 118863 - 119201 437 112 aa, chain - ## HITS:1 COG:no KEGG:LACR_1768 NR:ns ## KEGG: LACR_1768 # Name: not_defined # Def: hypothetical protein # Organism: L.lactis_SK11 # Pathway: not_defined # 1 112 1 112 112 76 35.0 4e-13 MTYRVDISGLDDLIEAIEEAKKLDDVKEVVKNDTAYMANQIAEETPVRSGYLKRSETPSI KDDGMTGEVEAMADYSAYVEYGTRYMYGRFYMKKGQTAAAKRFLDNMEALVK >gi|307679190|gb|GL457057.1| GENE 125 119198 - 119473 174 91 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256853526|ref|ZP_05558892.1| ## NR: gi|256853526|ref|ZP_05558892.1| predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis D6] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis D6] hypothetical protein HMPREF9494_02257 [Enterococcus faecalis TX2137] hypothetical protein HMPREF9495_02777 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9503_00328 [Enterococcus faecalis TX0043] # 1 91 1 91 91 159 100.0 6e-38 MRTCIDYYNKKHELISEKLIGNVTEVGTEKQMTIFPNIKEQMVIFRFRDRLAIRSGFLEY YDEEEQKNRKFTVVKNLRVSKGTSVYGSEYR >gi|307679190|gb|GL457057.1| GENE 126 119470 - 119802 296 110 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256617876|ref|ZP_05474722.1| ## NR: gi|256617876|ref|ZP_05474722.1| predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis D6] predicted protein [Enterococcus faecalis X98] hypothetical protein HMPREF9498_02431 [Enterococcus faecalis TX4248] conserved hypothetical protein [Enterococcus faecalis TX0102] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis DS5] predicted protein [Enterococcus faecalis D6] predicted protein [Enterococcus faecalis X98] hypothetical protein HMPREF9498_02431 [Enterococcus faecalis TX4248] conserved hypothetical protein [Enterococcus faecalis TX0102] conserved hypothetical protein [Enterococcus faecalis TX2137] conserved hypothetical protein [Enterococcus faecalis TX0027] conserved hypothetical protein [Enterococcus faecalis TX2141] conserved hypothetical protein [Enterococcus faecalis TX0043] conserved hypothetical protein [Enterococcus faecalis TX0645] # 1 110 1 110 110 185 100.0 1e-45 MTLSDYRVLLDISEDTYEKDKAKIIKIWDITEKQLRVKLKADKIPEKLDYIVPSIVVKRY NRLGFEGMEQHSQSEETISYNLDDFGEFQDEINDYLEEQGLIRKRKVSFL >gi|307679190|gb|GL457057.1| GENE 127 119873 - 120769 1197 298 aa, chain - ## HITS:1 COG:no KEGG:MPTP_1414 NR:ns ## KEGG: MPTP_1414 # Name: not_defined # Def: major capsid protein # Organism: M.plutonius # Pathway: not_defined # 3 292 2 278 289 276 52.0 7e-73 MPVILDSKDLKAIDKEFAAGSQVWDLLKGGAAAVTEADFVGAKEVRINKMKGFTASDYKR NEDNKRSKIDVAKETFKLEKERWFGYDLDTLDQSENASYEVQALVEEHTRLIAIPEKDRT AVQRLLEAAFAEAADDDSEGKYVGKTVKETITTENSLASYDAAEAYMTDAEIVGPFIMFA STDYYSALKNAKGVSKTFTTNEQQISGINRKVAQLDGSDTIIQKVAKSRLQVDSTKKINY ILVPLMVCSPVEKYNSIDLIPASQDRDGYRDTIKGLNYYDAIVTEKARPAIYVSYDSK >gi|307679190|gb|GL457057.1| GENE 128 120783 - 121418 697 211 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256617874|ref|ZP_05474720.1| ## NR: gi|256617874|ref|ZP_05474720.1| predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis ATCC 4200] # 1 211 7 217 217 260 99.0 5e-68 MNEEKHLLLPMDLQFFADEPNSDEPNSDNSNESGNSSTKDSQNPKNENPDGKETGKTFTR EDVSKMIAAETKKAVEQAKSDWEKQKSYEQMTAEERVKAKEQEAADKEALAEKREKEAQA RLDRLTRAESVRNDLSENGLSDYVSAAQADLLLVKDTDEDTKKAVDELKQIISKARDGIQ KELLKGQTVNVATATKETDWRSNLTKNLEKK >gi|307679190|gb|GL457057.1| GENE 129 121541 - 122467 710 308 aa, chain - ## HITS:1 COG:SPy0975 KEGG:ns NR:ns ## COG: SPy0975 COG5585 # Protein_GI_number: 15674985 # Func_class: T Signal transduction mechanisms # Function: NAD+--asparagine ADP-ribosyltransferase # Organism: Streptococcus pyogenes M1 GAS # 2 298 6 307 541 160 32.0 4e-39 MSNYWAEREAKHIEEMLKRHVNYEQEIHRRYLQLWKTIEAEIQQFYVAYAGKEKINIDEA KRCASKHDVQIFAEKAKRYVQTRDFSKEANEQLRLYNLTMKVNRLELLKSKIGLYLTDNT NQLQTYFTAMLTEESVAEFVRQAGILGESVLSEETYRLFTKAIIEGSFHNATFSQRLWAN QDVLKASIDRLLTVGLAAGKHPDVLARELRRLVVIDSLRGKETADYVARRLMISESARIQ SEVQKQSYEKYGYEEYNLIVEPSACPICVGIASANPHKVSEMSPGINASPIHNWCRCSTA PAYKDKKF >gi|307679190|gb|GL457057.1| GENE 130 122460 - 123944 1331 494 aa, chain - ## HITS:1 COG:no KEGG:BH3532 NR:ns ## KEGG: BH3532 # Name: not_defined # Def: hypothetical protein # Organism: B.halodurans # Pathway: not_defined # 25 474 3 428 451 339 43.0 2e-91 MTEKVSRPNTESKIREFVDLLGNRVFYCDKNAKIDERLVDKYINKHRKLIGFYEELEKLY NGQHDIYYQKNKGIGKPDHRIAVNFARYVVDSSAAFFNGKPTKITHPDGEVKEFVQDFRK RNDEEDNDAELSKLIAIYGHAYKLLYQNEEAETCVTYLKPTQGFIVYADDLLKAPMFAVL YNKMTRDELTATVYPQNSTETFIFTQDKTSKRLETKRGPTVFQKALSYLLGGKEAIANPY GEVPMIEFMENDERQGRIESVWSLINNYNEALSEKANDVSYFADAYLKMIGVDLADENVA SYLRDNRVINSAEPLNEGESVDINFLDKPSSDTTQENLLDRLERLIYQMSMTYNANDESF SNNASGISLEFKMQNPRNLAQAKARKFKKAYAQMYKMIFSLPTNVPANKAKEWFNLEYTF DFNIPRNIKDEAETAQKLEGIVSRETQLGVLSIVPDVTQEMERIKDEETEERLNPQVDFG KFTRTTEEVTEEHE >gi|307679190|gb|GL457057.1| GENE 131 123944 - 125227 785 427 aa, chain - ## HITS:1 COG:SPy0972 KEGG:ns NR:ns ## COG: SPy0972 COG1783 # Protein_GI_number: 15674984 # Func_class: R General function prediction only # Function: Phage terminase large subunit # Organism: Streptococcus pyogenes M1 GAS # 67 409 60 408 429 192 34.0 2e-48 MQTKKRNIVLEFNFPSRVFNKSFYDRLVDYSKFTEVYWGGASSGKSHGVVQKVVFKACQR WKKPRKILFTRKVGRSLKDSIFEDVKACLSDWGLLDKCKVNNTDFRITLPNGAEFLFKGM DDPEKIKSIKGLSDVVMEEATEFTLEDYTQLTLRLRERKHVKRQIFLMFNPVSKLNWVYK SFFDEEAEVDQRRTGIYHSTYKDNRFLDSENKKVIEDLAKRNPAYYRIYALGEFATLDKL VFPNYQRKRLDKHDELLRQIDSDFGLDFGYVNDPSAFVHAKVDEKNKRIYVLEEYVKKGL LNDEISTVIKDLGYAKEVITADSAEKKSIAEIKKNGITRIRAAKKGPDSIRQGLSFLLQY EIIVDDRCVKLIEELENYTWAKDKKTGEYTNEPIDSYNHVIDALRYAVEHRSKKARGIKL QSVKGVI >gi|307679190|gb|GL457057.1| GENE 132 125208 - 125642 505 144 aa, chain - ## HITS:1 COG:L36274 KEGG:ns NR:ns ## COG: L36274 COG3728 # Protein_GI_number: 15672009 # Func_class: L Replication, recombination and repair # Function: Phage terminase, small subunit # Organism: Lactococcus lactis # 3 122 1 116 147 99 46.0 2e-21 MRMTEKQKRFCDFYIETGNAKEAAIRAGYSEKTAKQIGQENLTKPDLRAYIDERLAELKN ERTADAQEVLEYLTAVMRGEYKEATLIGVGEGAQAVVDIDVGAKDRLKAAELLGKRHALF TDKVDLQTGDIVIKVGEWDADEET >gi|307679190|gb|GL457057.1| GENE 133 125674 - 125904 144 76 aa, chain - ## HITS:1 COG:no KEGG:EF2021 NR:ns ## KEGG: EF2021 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 23 71 1 49 55 81 79.0 8e-15 MKSYWYVSLTHEYPQPKHSTVSMRVVMSVQIKKNASIVEMTREATPKEIDACKLVYCGYG SWKDKHIQENIEMYVK >gi|307679190|gb|GL457057.1| GENE 134 126667 - 127338 474 223 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315143445|gb|EFT87461.1| ## NR: gi|315143445|gb|EFT87461.1| hypothetical protein HMPREF9495_02786 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9503_00319 [Enterococcus faecalis TX0043] hypothetical protein HMPREF9508_00692 [Enterococcus faecalis TX0312] # 1 223 1 223 223 384 100.0 1e-105 MQSLTLKRVQKFDISQPISLSDDNNVLGTIAPDSPKTLTVESRIFKVFNATFMETINESI FVLNDDAELQAINEYKRSEVFKVFYDTTDKVLYSTAPSAISRNFFKTLEETEPSKVKLSN FIFDFKTIQTKLNSTRGIAFTTEEEGVQKKRFTGDNVEANQEAGEALTDDTATFLIGKMD ILQKERTIGFTKAGALLMYSSLNDIDNENPFLNAARAIIKIIS >gi|307679190|gb|GL457057.1| GENE 135 127331 - 127951 133 206 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256853536|ref|ZP_05558902.1| ## NR: gi|256853536|ref|ZP_05558902.1| predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis T8] hypothetical protein HMPREF9495_02787 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9503_00318 [Enterococcus faecalis TX0043] hypothetical protein HMPREF9508_00693 [Enterococcus faecalis TX0312] # 1 206 64 269 269 350 100.0 4e-95 MFFWVNKFRTYFSFKTVRWEMSYRTPGLSIENTNKLKEELYRILKSKSIQILKDNKKEES RVIKFKNDRGIEAEFDLRWNEYVDDRFSMTIIFKSQTSHRDVRKQWSFYRNIIEETLKVI SEESNYDKKPYEEKSYYTVSLNMEKNPFYLLTIKTYDKPKDIKFDLSFKIDGVNFKTTNK KIVLTTKDITKVDTVLKDYVMLGKVS >gi|307679190|gb|GL457057.1| GENE 136 128320 - 128403 67 27 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIIKLPIAMIAVIYMTGVEPTQAIKYH >gi|307679190|gb|GL457057.1| GENE 137 128773 - 129189 241 138 aa, chain - ## HITS:1 COG:no KEGG:EF2024 NR:ns ## KEGG: EF2024 # Name: not_defined # Def: ArpU family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 138 1 138 138 233 94.0 2e-60 MILLLKEVDFRQTKANARNVLKNFRRLERIAGRSLIDLKSPIITEMPKSQRHGNKTEDAL VQLADAEAERDAILSALMALSLTSRQILHYSFCVQDHYSNYKIAREVGYSERSIQRMKSE ALIEFAEAYRNGKIIAYR >gi|307679190|gb|GL457057.1| GENE 138 129456 - 129542 68 28 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNKDDVKDDEWKIVKYCRIIIVFFIVNQ >gi|307679190|gb|GL457057.1| GENE 139 129920 - 130036 61 38 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIKFKEFNIQLFDVHIYIKRLSSFKTNKNSIKKLTSFR >gi|307679190|gb|GL457057.1| GENE 140 130096 - 130521 376 141 aa, chain - ## HITS:1 COG:lin1248 KEGG:ns NR:ns ## COG: lin1248 COG4570 # Protein_GI_number: 16800317 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvase # Organism: Listeria innocua # 1 141 2 140 145 90 36.0 1e-18 MRIILPIEPKPQSRPRFARRGNYVKTYEDRAMKEYKNQVKNYFRKSRAKLIEKGPISAHV TFYIHPPKSALSNKQKRLEVELERKYCDKKPDLDNYFKAVTDAAEGILYKNDGQIAVMVC QKLYSMRPRTELEITSLEEQV >gi|307679190|gb|GL457057.1| GENE 141 130539 - 130838 454 99 aa, chain - ## HITS:1 COG:no KEGG:SH1788 NR:ns ## KEGG: SH1788 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 99 4 102 104 103 55.0 3e-21 MNELVKLVEEWAKEKRLDKAEPEKQMLKVIEEVGEVGAALARNNENDLRDGIGDMVVTLI ILAMQNNMDLYECLNQAYSEIKTRQGKMVNGVFVKEADL >gi|307679190|gb|GL457057.1| GENE 142 130839 - 131141 399 100 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256853542|ref|ZP_05558908.1| ## NR: gi|256853542|ref|ZP_05558908.1| predicted protein [Enterococcus faecalis T8] conserved hypothetical protein [Enterococcus faecalis Merz96] conserved hypothetical protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis CH188] conserved hypothetical protein [Enterococcus faecalis R712] conserved hypothetical protein [Enterococcus faecalis S613] hypothetical protein HMPREF9498_02415 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9492_01237 [Enterococcus faecalis DAPTO 512] hypothetical protein HMPREF9493_02421 [Enterococcus faecalis DAPTO 516] predicted protein [Enterococcus faecalis T8] conserved hypothetical protein [Enterococcus faecalis Merz96] conserved hypothetical protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis CH188] conserved hypothetical protein [Enterococcus faecalis R712] conserved hypothetical protein [Enterococcus faecalis S613] hypothetical protein HMPREF9498_02415 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9492_01237 [Enterococcus faecalis DAPTO 512] hypothetical protein HMPREF9493_02421 [Enterococcus faecalis DAPTO 516] hypothetical protein HMPREF9500_01594 [Enterococcus faecalis TX0017] hypothetical protein HMPREF9495_02793 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9497_02954 [Enterococcus faecalis TX4244] hypothetical protein HMPREF9503_00312 [Enterococcus faecalis TX0043] hypothetical protein HMPREF9517_01896 [Enterococcus faecalis TX1341] hypothetical protein HMPREF9511_03147 [Enterococcus faecalis TX0630] hypothetical protein EF62_1367 [Enterococcus faecalis 62] hypothetical protein EF62_2389 [Enterococcus faecalis 62] hypothetical protein HMPREF9520_03422 [Enterococcus faecalis TX1467] # 1 100 1 100 100 167 100.0 2e-40 MIEMRVLDYRITSDDKQVIVNKARRNEHGELTILTDKDGTQKESLALIGYYGNLSKALVA IERDYVLSSGKTIQTVKEYKKELESIHSKLKRELDFGEEF >gi|307679190|gb|GL457057.1| GENE 143 131145 - 132107 703 320 aa, chain - ## HITS:1 COG:no KEGG:EF2130 NR:ns ## KEGG: EF2130 # Name: not_defined # Def: DnaD domain-containing protein # Organism: E.faecalis # Pathway: not_defined # 1 261 1 257 283 206 47.0 8e-52 MARPAKEGLDYFPLDVGIFEDEKIEAIAGEFGIKGELAVIKLLCAIYKKGYFILWDDLSQ ATLLKRLPGVSKEMLNQIVNRLVLWGFFDKELFDSVKVLTSENIQATFFEATKRRKTPKP TKYIVNVNSNSQNETVNADINTQSKVKESKVNKSKVNKKETESCINPLSPETSVEKAFFE EPLGEEKLTELIRYYSQNVSPATPVNITDLQYDLADFDGDLELLKEAVNICARNNERRYS YFAGILKNWRANGVKTYADYLNNERERADKKTQNKQYQNKPVRQEKVPEWMNQANGEEEK LSPEEQAEFERQMQELLGGE >gi|307679190|gb|GL457057.1| GENE 144 132121 - 133011 1049 296 aa, chain - ## HITS:1 COG:lin0085 KEGG:ns NR:ns ## COG: lin0085 COG3723 # Protein_GI_number: 16799163 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecE pathway) # Organism: Listeria innocua # 1 253 1 239 271 256 54.0 5e-68 MATNETLKNQLSQQNQKQVPANQLGLKGLMNTPTMKRKFEEVLHENANAFMSNVMTLVSN DSYLAESEPMSILSGALTAATLNLGLDKNLGYAYLVPFNTKNKQTGKWERKAQFILGYKG YIQLAQRSGKYKALNVIEVYEGELLSWNRLTEEFEFDPNGRQSDDVIGYVGYFELLNGFK KTVYWTKQEIEAHRIANSKDKEKTKLSGVWATDYNAMARKTVLRNMLSKWGILSIEMQEA TTSDEKVQQMQEDGNIISETEVEENTTMKTAEVINEADSDSLNQTDLFDTKNPPLE >gi|307679190|gb|GL457057.1| GENE 145 133014 - 133955 995 313 aa, chain - ## HITS:1 COG:BH3544 KEGG:ns NR:ns ## COG: BH3544 COG5377 # Protein_GI_number: 15616106 # Func_class: L Replication, recombination and repair # Function: Phage-related protein, predicted endonuclease # Organism: Bacillus halodurans # 5 313 10 317 320 274 46.0 1e-73 MIQSTLSMSHQEWLEDRRKGIGGSDVATILGLNQYKSAYQLWLEKTGQVELKDTESEPAY WGNVLEEVVAKEFQERTGKKVRRRNQVFEHSLHPFLRANIDREVVRENAILECKTANQFL AKEWAGDEVPLSYLCQVQHYMNVLNKDYCYIAVLIGGQKFIWKRVERDQELIDVLTEQLV DFWENNVIKGVEPIIDGSKATADFLKDKYSDIEETQTTLPASFDELLDQKNEMKKTKKEL DVAIRKIENEIKSELGKRNASIGITKKHIVEWKEIPTKRLNSKKFAEKYPQIAEDEEIYM VTTPRRLIEKEIK >gi|307679190|gb|GL457057.1| GENE 146 133952 - 134053 166 33 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPEFDSLGARQEPPEEKEVLELTWEYDEEEDER >gi|307679190|gb|GL457057.1| GENE 147 134053 - 134280 239 75 aa, chain - ## HITS:1 COG:no KEGG:EF2843 NR:ns ## KEGG: EF2843 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 73 1 73 74 105 68.0 8e-22 MIEVRGLGNDIYELMLANAQNNIIQSVRTSASYGNTSCVVSSKGATKPFLDQLQMQGVDY IELEDEKIKLFWEGL >gi|307679190|gb|GL457057.1| GENE 148 134280 - 134603 392 107 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|257090308|ref|ZP_05584669.1| ## NR: gi|257090308|ref|ZP_05584669.1| predicted protein [Enterococcus faecalis CH188] conserved hypothetical protein [Enterococcus faecalis TX0635] predicted protein [Enterococcus faecalis CH188] conserved hypothetical protein [Enterococcus faecalis TX0635] conserved hypothetical protein [Enterococcus faecalis TX2141] conserved hypothetical protein [Enterococcus faecalis TX4244] conserved hypothetical protein [Enterococcus faecalis TX0043] conserved hypothetical protein [Enterococcus faecalis TX0630] hypothetical protein HMPREF9520_03428 [Enterococcus faecalis TX1467] # 1 107 1 107 107 178 100.0 1e-43 MNDKIQNLLMELVKECRKGKVTIVLSTVDSEMMEASSVLLAGSLPEQAIAFSELFEKFKE EALAHDCDCPQCKQIKESFIGAESSSTKQNNEEKLDILLKDFLRGEL >gi|307679190|gb|GL457057.1| GENE 149 134647 - 134832 293 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229545381|ref|ZP_04434106.1| ## NR: gi|229545381|ref|ZP_04434106.1| hypothetical protein HMPREF0349_0598 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis CH188] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9514_01537 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9509_02926 [Enterococcus faecalis TX0411] conserved hypothetical protein [Enterococcus faecalis TX0635] hypothetical protein HMPREF0349_0598 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis CH188] hypothetical protein [Enterococcus sp. 7L76] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_02926 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9514_01537 [Enterococcus faecalis TX0855] conserved hypothetical protein [Enterococcus faecalis TX0635] conserved hypothetical protein [Enterococcus faecalis TX4000] conserved hypothetical protein [Enterococcus faecalis TX2141] conserved hypothetical protein [Enterococcus faecalis TX4244] conserved hypothetical protein [Enterococcus faecalis TX0043] conserved hypothetical protein [Enterococcus faecalis TX0645] conserved hypothetical protein [Enterococcus faecalis TX0630] hypothetical protein EF62_2396 [Enterococcus faecalis 62] hypothetical protein HMPREF9520_03429 [Enterococcus faecalis TX1467] # 1 61 1 61 61 97 100.0 4e-19 MYVAIGEASRETYVIGETQAEVMRKLFEEYPYVSADKNVYPERLSIVQKEPRTSANEQGK Y >gi|307679190|gb|GL457057.1| GENE 150 134823 - 135017 192 64 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229545380|ref|ZP_04434105.1| ## NR: gi|229545380|ref|ZP_04434105.1| hypothetical protein HMPREF0349_0597 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis CH188] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9514_01536 [Enterococcus faecalis TX0855] hypothetical protein HMPREF9509_02925 [Enterococcus faecalis TX0411] conserved hypothetical protein [Enterococcus faecalis TX0635] hypothetical protein HMPREF0349_0597 [Enterococcus faecalis TX1322] predicted protein [Enterococcus faecalis ATCC 4200] predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis HIP11704] predicted protein [Enterococcus faecalis JH1] predicted protein [Enterococcus faecalis CH188] hypothetical protein [Enterococcus sp. 7L76] conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] hypothetical protein HMPREF9509_02925 [Enterococcus faecalis TX0411] hypothetical protein HMPREF9514_01536 [Enterococcus faecalis TX0855] conserved hypothetical protein [Enterococcus faecalis TX0635] conserved hypothetical protein [Enterococcus faecalis TX4000] conserved hypothetical protein [Enterococcus faecalis TX2141] conserved hypothetical protein [Enterococcus faecalis TX4244] conserved hypothetical protein [Enterococcus faecalis TX0043] conserved hypothetical protein [Enterococcus faecalis TX0645] conserved hypothetical protein [Enterococcus faecalis TX0630] hypothetical protein HMPREF9520_03430 [Enterococcus faecalis TX1467] # 1 64 1 64 64 123 100.0 3e-27 MKAIRETRLVGAFLLMIVLGVLLKSHFSMPILATLSAPFFIHWFFNWDEAKYQYSKKGGD KKCM >gi|307679190|gb|GL457057.1| GENE 151 135070 - 135252 183 60 aa, chain + ## HITS:1 COG:no KEGG:EF2036 NR:ns ## KEGG: EF2036 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 60 1 60 62 79 88.0 3e-14 MFFVIKRASDKKYYFLIKTEENEIIASSKTYYYKSSVLEIIESIKNDMNPKAIIVDTTFN >gi|307679190|gb|GL457057.1| GENE 152 135292 - 136017 561 241 aa, chain - ## HITS:1 COG:PM1774 KEGG:ns NR:ns ## COG: PM1774 COG3646 # Protein_GI_number: 15603639 # Func_class: S Function unknown # Function: Uncharacterized phage-encoded protein # Organism: Pasteurella multocida # 5 117 29 138 239 71 37.0 2e-12 MDNLVIMKNQQAVTTSLQVAEVFEKQHKHVIEAIEAKIQSAENSAYYQNMFAEGEYKDSR GRKQRLYYMNRDGFSFIVFGFTGKKADSFKLKYIEAFNQMEELLKTQSNLPINNTELLLE AALKHERGLTLVNQRLDKLETETTINRSQQRKIQGLVSSTVIKVLGGKKTLAYQDSSIKQ SAFSNCYKQLKALFDVASYVDIPKVRYEEALALIPRWKPNLELQARIDMANGNGDMFKEV S >gi|307679190|gb|GL457057.1| GENE 153 136056 - 136367 236 103 aa, chain - ## HITS:1 COG:no KEGG:EF2038 NR:ns ## KEGG: EF2038 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 103 1 103 103 181 97.0 9e-45 MENFLDSSSKNFLYNIIEKILRKMFEQVIDEASQGLNERAEYLDIKQLSSRYSMSVPEVE QNFVKDKRMQMIEKRKPGTSKGKRYWPAKEAIKICNDIMNHWD >gi|307679190|gb|GL457057.1| GENE 154 136379 - 136546 171 55 aa, chain - ## HITS:1 COG:no KEGG:EF2849 NR:ns ## KEGG: EF2849 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 55 1 58 58 68 79.0 1e-10 MSQDLEIGVRAALIRAGKTQSWLSKLLGISSPYLSDILCVRRRSEEQVQKILNIR >gi|307679190|gb|GL457057.1| GENE 155 136627 - 137037 152 136 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307268345|ref|ZP_07549726.1| ## NR: gi|307268345|ref|ZP_07549726.1| hypothetical protein HMPREF9498_00485 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9498_00485 [Enterococcus faecalis TX4248] hypothetical protein HMPREF9495_02805 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9503_00301 [Enterococcus faecalis TX0043] # 1 136 1 136 136 201 100.0 1e-50 MYNVVEKSIPFLEKYSFWVSIALFLFWVIQKKSKLYISYLTNKAKNNYERKYFEIFAYNE KNKNHQIQLTSSWLDLYKSYWKRTNNTLLLSFIFAYISFNTTSYFRNDSDNFFKLLTIST SLFLAGLTYIQQLYRE >gi|307679190|gb|GL457057.1| GENE 156 136964 - 137161 98 65 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MESKLRIVTALESIANSLSTLAEDTKAKNRYKESLFVQIFIFILGIVVGCMLIQLGTDLW KWLIV >gi|307679190|gb|GL457057.1| GENE 157 137174 - 137356 302 60 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|256853556|ref|ZP_05558921.1| ## NR: gi|256853556|ref|ZP_05558921.1| predicted protein [Enterococcus faecalis T8] predicted protein [Enterococcus faecalis T8] hypothetical protein HMPREF9495_02806 [Enterococcus faecalis TX2141] hypothetical protein HMPREF9503_00300 [Enterococcus faecalis TX0043] # 1 60 1 60 60 105 100.0 1e-21 MANIQEARQKILNHFEKNQWEIPDVASALGITEQYLRKILNNPEKHLKQMTDIIAYYKIR >gi|307679190|gb|GL457057.1| GENE 158 137648 - 137983 280 111 aa, chain + ## HITS:1 COG:L43680 KEGG:ns NR:ns ## COG: L43680 COG1396 # Protein_GI_number: 15672021 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 1 109 1 113 128 71 36.0 3e-13 MTVFDRIKLLAKERGKSLNRIEEELGLPKNVLYRMKTSDNPTKDRLETLANYFDVSVDYL LGRTDNTKATDEKKSDDLDDVLDNVMSFDGKPLDDHDREVIRAYLKGRFGK >gi|307679190|gb|GL457057.1| GENE 159 138002 - 138346 247 114 aa, chain + ## HITS:1 COG:no KEGG:EF2853 NR:ns ## KEGG: EF2853 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 114 1 114 114 190 95.0 1e-47 MKSIKELVEEYNVELVFTTLNKRACFDPTYGIIFVNQNLTPTEQEEAIYHELKHVEDHVD IMALYKIPVFRSKMESEAEQYMFRSLIEKYEGQYNYSNVIAHYNLKMGQEIYLK >gi|307679190|gb|GL457057.1| GENE 160 138404 - 139132 443 242 aa, chain + ## HITS:1 COG:CAC1317 KEGG:ns NR:ns ## COG: CAC1317 COG1226 # Protein_GI_number: 15894597 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, predicted NAD-binding component # Organism: Clostridium acetobutylicum # 4 230 7 237 256 152 42.0 7e-37 MKINQKFYNYSIVVLALISIALVILDFSNVINISNPPFNIIDNIILITFTIDYIVRFFIS KNKIKFFKENIFDLIAIIPFDAIFSFFRIARLFRIAKIARLAKLTRAIGVVGKLTRNTKS FLNTNGFLNVIYLSSVLIVISAMIYSYAENVPYIDAFWWALVTTTTVGYGDISPATPLGR VAAIILMILGIGFIGMLTSTITEYFNKSNNEDEESNDKIEILINKIDQLETTIEQLKEEI KK >gi|307679190|gb|GL457057.1| GENE 161 139232 - 140380 453 382 aa, chain + ## HITS:1 COG:BS_ydcL KEGG:ns NR:ns ## COG: BS_ydcL COG0582 # Protein_GI_number: 16077547 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Bacillus subtilis # 63 379 49 368 368 109 24.0 1e-23 MAKLNWSKKYKYVFSYSNKKGTFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQY ALETQNTSFIENKQLTIDEWIDVWIPYAQDNWSVSTKQNIESAIKFHISPLIGNQKLSSL NKITYKREFIDKLRQKNKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKFDLSNNV RSFSKKELQRFVAVLENEDIQIQVIFLTLLKSGMRKGELMGLRWNDIDLNEKYFDINSTR GDYGENKPKTKTSIRKVYFDNSLLTLIKKYKNHEKERLLREGIILREKDYFILSSRNLPI KQSRITYIFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVY SDVLKEEEKETADMMDKLIENL >gi|307679190|gb|GL457057.1| GENE 162 140660 - 140851 232 63 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|257087243|ref|ZP_05581604.1| ## NR: gi|257087243|ref|ZP_05581604.1| predicted protein [Enterococcus faecalis D6] predicted protein [Enterococcus faecalis D6] prepilin-type cleavage/methylation domain protein [Enterococcus faecalis TX2137] # 1 63 1 63 176 108 100.0 1e-22 MNKSAGFTLMETLASLTIVCFMTMLPTLAIHRWQETLKIEQFLATVEKQLRFAQQQAIVL EET >gi|307679190|gb|GL457057.1| GENE 163 140848 - 141123 431 91 aa, chain - ## HITS:1 COG:SP2051 KEGG:ns NR:ns ## COG: SP2051 COG4537 # Protein_GI_number: 15901871 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Competence protein ComGC # Organism: Streptococcus pneumoniae TIGR4 # 3 86 9 92 108 84 63.0 7e-17 MKKKQKYAGFTLLEMLIVLLIISVLILLFVPNLAKHKETVDKKGNEAIVKIVESQIELYT LEKNKTPSLNELVNEGYITKEQLDKYTAEKQ >gi|307679190|gb|GL457057.1| GENE 164 141123 - 142169 827 348 aa, chain - ## HITS:1 COG:L0314 KEGG:ns NR:ns ## COG: L0314 COG1459 # Protein_GI_number: 15674104 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulF # Organism: Lactococcus lactis # 9 344 24 353 357 188 35.0 1e-47 MGLLQKKRIFKPSNKLTKKQQQLFLKLLADLLANGFNIQESFSFMKKSNTLPQRSITFLV EGFSSGIALQALVEELGFSTMVSAQLSFATAHGDLVGTLQAISEHFFQTEKYRQQFYKII SYPLLLIAFLILVIVGIRQFLLPQLMENDANSYSKNIGILLIVYSPYILVTLVFVLSFSF FILNRYLKHQSAIQRAFVYLKLPIIRGLYREYVSAFFALEWGKLLAQGLEMKEVIDLMRH TTNYPLMKELAGAISEGLLVGETLHRQLAAYPFFTKALGLMIQQGEVKGKLGKELMVYSN VCFQGFFKKIERVITLVQPLIFIIIACLIIGVYGAMLLPIYGNMEGVL >gi|307679190|gb|GL457057.1| GENE 165 142126 - 143094 684 322 aa, chain - ## HITS:1 COG:SP2053 KEGG:ns NR:ns ## COG: SP2053 COG2804 # Protein_GI_number: 15901873 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB # Organism: Streptococcus pneumoniae TIGR4 # 5 271 2 266 313 249 50.0 4e-66 MTENVKKLAHQLIEWGVLHGAQDVYFLPNDTEIAISFRTGMQRTLYTQVSAEIGEKLIFH FKFIGGMDVGERRKAQLGATTYLIGETKQRLRLSSVGDFQNRESLVIRFLHRFGEQAEHF FFPHQLNEIEASCQKRGLYLFSGPVGSGKTTTMYRVAKQRSGEQQVIAIEDPVEIEEKRF LQLQTNEKIQLTYEALIKVCLRHHPDILIIGEIRDGETAQAVIRAALTGHTIFATIHARN LLGVQRRLIELGGPEHELAECLQGIIYQQILTTTINKEQVAGILYDYFFFKEAVIKSSWQ KNLRKAWAYGFITEKTYFQAIE >gi|307679190|gb|GL457057.1| GENE 166 143334 - 144662 1377 442 aa, chain - ## HITS:1 COG:SA1270 KEGG:ns NR:ns ## COG: SA1270 COG0531 # Protein_GI_number: 15927018 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 4 437 5 437 440 423 60.0 1e-118 MEKKQLKREITTFGALSTVMGTVIGAGVFFKAASVVGHAQSASLAIFAWVLGGALTICAG LTSAELATAIPETGGAVKYIEYTYGKLAGFLLGWAQSIIYYPANISALSIIFSTQLINLF HLSANLLIPIAILAGTSITIINLLGTKIASLVQSTTLVVKLIPIALISLVGLFTPGQVAV SLFPVETTANTGFLVAFSGALVATMFAYDGWLGVGNVAGEMKRPERDLPKAIIFGLLLIT LIYALINFVFLKTLPIEQIAGNLNAASDASVAIFGPIGGKIVTIGILISVYGALNGYTMT GIRIPYALALDNLMPFSRQFQKLSKRFVVPYVAGIFQLAVAIIMMFFGTFDLLTDMLVFV MWLFNLLIFLAVFILRKREPELKRPYKVPGYPIIPIIASLGGIFILVTTSITQPILALIG IGITLLGIPVYLVNKQKTKPKT >gi|307679190|gb|GL457057.1| GENE 167 144952 - 146025 1125 357 aa, chain - ## HITS:1 COG:L184159 KEGG:ns NR:ns ## COG: L184159 COG0820 # Protein_GI_number: 15672161 # Func_class: R General function prediction only # Function: Predicted Fe-S-cluster redox enzyme # Organism: Lactococcus lactis # 3 355 10 363 365 556 75.0 1e-158 MQKESIYGLTREQLVDWFLAHGEKKFRATQVWEWLYTKRVASFSEMSNISKSLMTLLEEN FSLNPLKQVIVQEAQDGTVKYLFELPDKNMIETVLMRQEYGLSVCVTTQVGCNIGCTFCA SGLLKKQRDLTAGEIVAQIMWVQHYFDERGLDERVSHVVVMGIGEPFDNYANVMNFLRTI NDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAISLHAPNNEVRTSIMRINRSFPI EKLMAAIDEYIEKTNRRVTFEYIMLSQVNDRPEHAQQLADLLRNKKKLSYVNLIPYNPVS EHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDIDAACGQLRSKQMKKEKVKNQ >gi|307679190|gb|GL457057.1| GENE 168 146150 - 147979 1603 609 aa, chain - ## HITS:1 COG:BS_yxdM KEGG:ns NR:ns ## COG: BS_yxdM COG0577 # Protein_GI_number: 16081014 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Bacillus subtilis # 1 603 1 620 622 256 32.0 1e-67 MNFNQFVIRNTIRNKHLYLAYFLSTMFSVMIFFTFTGFVFHPALANGLNPKAQMGMTAAA IIIYGFSFLFVLYSMDVFIQSRKKEFGTLMIQGMSPKQLKKMIFIENLVIGFFATIFGSI LGVGFSQFILWISNLLMHLGLGFYLPVMPFIITVISFAVLFLVISFFIQFRLPKATLQEL LKAGEMGKGEIKSSKVKSFLAVLLLVVGYGIALVAKGQLVLMVMFPVIFLVILGTKFLFD QLSVSVIERLKRKPKIFWKKTNMVVLSDLAFRMKDNARSFFLVSVISTVAFAAIGTLYGV NEMIFKGISSVPYELTLSDSTNPENQEMKQFATKTFQEKNIQFDQIDYTMYKTSAGIQLI KTSEYNKLAKFIDEPTLTGEKVVNLSQKDAPSAASVDVKSVQLANDQVLNIDKTEETNVL PTFGGVVVIPDSTSTDGIKAETETIWQPKAGTNREELIKAENIIGDKYPMLVGTAAMSAA ITQYYTPVLFVGLFIGIVFFVSAGSFLYFRLYSDMNTDVEKFKMIYKLGLTKKELKKMIY QQVGILFFTPIVVSFIHGAVALKAMYAVLDQPMQLAGWQVLGVFLLIQVVYYLIARTFYF KKVYHLVKD >gi|307679190|gb|GL457057.1| GENE 169 147969 - 148718 984 249 aa, chain - ## HITS:1 COG:BS_yxdL KEGG:ns NR:ns ## COG: BS_yxdL COG1136 # Protein_GI_number: 16081015 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Bacillus subtilis # 1 249 4 252 257 278 54.0 5e-75 MLEVQNLKKVYGNEIKYEALKGINLTVQDGEFIGIMGPSGSGKSTLLNLLATIDSPTDGE ILLNGKNPNNLNQEQIAKFRRTELGFVFQSFNLMPTLTVEENIILPLTLDGEKVSVMKRQ LAELSERLGINHLLKKRIAEISGGQAQRVAVARAMIHHPQLLLADEPTGNLDTKSSKDVM GLLQQLNEEEAATILMVTHDPLAASYCKRIVFIKDGELIDEIVQNGNQKEFYDLIMVKLA EIEGVDNEF >gi|307679190|gb|GL457057.1| GENE 170 148836 - 149537 905 233 aa, chain - ## HITS:1 COG:ECs4225 KEGG:ns NR:ns ## COG: ECs4225 COG2188 # Protein_GI_number: 15833479 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 6 187 33 206 265 77 28.0 2e-14 MRRKSVLYLEVADQIKEDILSGKYPVGTFLPTETELEEMFNVSKITIRRAIEMLATEEFV EKKSGRGTTVLSNRPYNKLSKAGTFTEFLNESGQKVTKKVLQVENLTLSKEMPAYQFLGE EVVHLSRLYLIDEQPYIYFNYYLPAAMKDVSLTEYKEESLYRLMDRHAIEIYKFEDRFEV ATLTEAEQKMLQTTETTGLKRIRRSLSPTGRCVEYSEAIYNTKIHPYVIEYEA >gi|307679190|gb|GL457057.1| GENE 171 149668 - 152091 2591 807 aa, chain - ## HITS:1 COG:BS_spoIIIE KEGG:ns NR:ns ## COG: BS_spoIIIE COG1674 # Protein_GI_number: 16078743 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Bacillus subtilis # 25 796 15 780 787 681 49.0 0 MAQKRATNKKKSTTKKKTKKQQQQQERLNYMFLGLIFILFGVFGLFRLGFLGTLLANCLR LVVGNTFPFAAILLILYGLLVMIYGKDFPLKRGRPIFGAVLIYISVLLFFHAFMFRNVSG SQPDILGNTWEFLQSDLKANQVTQNVGGGMIGALLYQGTYFLVAQFGSYLIATLLLLAGI FLMSMWDFQQIVDHFQSIQDRLSHVSAKSQARQEEKEAKRAAKKEAKAAERQAKIEAAAQ QKLQKRERMEQAAAERLTKTPVETHQPMMEEPAAPTPVQIDSFQQQNQAMPVPPIAATKP QREQEEEAADEAGVLEFEISEEAEDRDYQLPPTDLLDTIQATDQSGEYEKIEKNIGVLEQ TFKSFGVDAKVVKASLGPSVTKFEVQPAVGVKVSKIVNLTDDIALALAAKDVRMEAPIPG KSLIGIEVPNSAISTVSFRDIVEAQPSHPDKLLEVPLGRDISGMVQTADLSKMPHLLIAG STGSGKSVAINGIITGILMQAKPHEVKLMMIDPKMVELNVYNGIPHLLTPVVTNPRKAAQ ALQKVVQEMEFRYEKFAATGVRNITGYNQLIQQKNAEDGENRPILPFIVVIVDELADLMM VASNEVEDAIIRLAQMARAAGIHMILATQRPSVDVITGIIKANVPSRMAFAVSSGTDSRT IIDTNGAEKLLGRGDMLFLPMGENKPIRIQGAFISDQEVERVVAFVTDQQEAEYQESMMP TDEPTTSGGGEAPQDELFEEAKNLVVEMQTASISLLQRRFRIGYNRAARLVDELEAHGVI GPSEGSKPRKVFLQAESEEAAPETPEQ >gi|307679190|gb|GL457057.1| GENE 172 152405 - 153616 1519 403 aa, chain - ## HITS:1 COG:lin2488 KEGG:ns NR:ns ## COG: lin2488 COG1252 # Protein_GI_number: 16801550 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase, FAD-containing subunit # Organism: Listeria innocua # 1 402 1 402 403 346 44.0 4e-95 MNKKHVVILGAGYAGLKTLRELQKGAKDVEITLVDRNNYHYEATDLHEVAAGTQPAEKIT YNIMDVVDEKMTTFIQGTVKTIDAATQTVALEDGQTINYDYLVVSLGFESESFGIPGVQE HALQMVDVKTALNVYEHIQEQMRQYKATQNEEFLKIVVCGAGFTGIELLGSLVENKPKFA EIAGVSADQIQIYCVEAVTRLLPMFNEKLANYGVQLLKDSAIHLLLGKPIKEIKPSAVVY QDNEAGDLAELSAKTIIWTTGVSGSHVVGDSGFEARRGRVMVQPDLTDANHSNVYIIGDC SAVMDTETNRPYPTTAQIALKMGAHAAKNIQAQLKGEATKPFSFKSQGSVCSVGNTRALG IVGKTDIKGYPASFMKKIIMNKALFETGGTKEMMAKGRFDLYH >gi|307679190|gb|GL457057.1| GENE 173 153645 - 154550 764 301 aa, chain - ## HITS:1 COG:L187450 KEGG:ns NR:ns ## COG: L187450 COG1575 # Protein_GI_number: 15672164 # Func_class: H Coenzyme transport and metabolism # Function: 1,4-dihydroxy-2-naphthoate octaprenyltransferase # Organism: Lactococcus lactis # 1 298 1 298 301 286 53.0 2e-77 MNREIFFELVELKAKTASVLPFLLGICFSWYQYGRLHVGYVLIFFIAMFIFNMAVDILDN YNDYHHATEVHDYKEKTNIIGRENLSLPLIRKMIFWMILVSALMGIGLSFIVGWPLLIMG LYCYLIGIFYSSGPKPLSSLPLGEVFSGFTMGFMITLICVYINTFEVFNWSAANLWGIFL VALPNTCYIANLMLANNICDLEEDENNKRYTLVHYLGKASSLKLFVGLNTIAMLAILLAV GLGLTPPTMLLMLLTLPFVRKQTQALLKEQVKSKTFVCAVKILAVGATAQVLFFAIGLWW L >gi|307679190|gb|GL457057.1| GENE 174 154672 - 155652 1021 326 aa, chain + ## HITS:1 COG:L186258 KEGG:ns NR:ns ## COG: L186258 COG0142 # Protein_GI_number: 15672163 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Lactococcus lactis # 1 326 1 326 326 305 46.0 5e-83 MNTFWKSFPDVERSLTETCELIEQTLHTRNEDIEEALVTLARSGGKLLRPAFFFLFAQLG DEEKQEKQQLLKIAASLEILHMATLIHDDIIDDSPLRRGAVTIQSQYGKDVAVYTGDLLF TEFFTLIADAMNGSEFMKINAQGMKRLLLGELDQMSHRFDRRMSIPAYLRSVNGKTAELF SLSCLEGAYFGHSSKEVQRLAKRIGRHIGIAFQVYDDILDYTADTETLKKPALEDLSQGV YTLPLLFAYQAAPDVFSPYLDRGRAITLEEAAEVAALVNDYHGVTEAQAFAKKVTNKAIT DIQQLPDGTAKETLLSLTELLLHRSF >gi|307679190|gb|GL457057.1| GENE 175 155732 - 157495 234 587 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 312 568 91 354 398 94 27 3e-18 MEKQPTTKDVWKNDQWVRPFLKRYKKTLYFALLLGFLTFFSAGALMFTSGYLISRAASLP ENILLIYIPIVLTRAFGIGRPVFRYVERLTSHNWVLKMTSDLRLKLYNVLEKDAIFFKTK YRTGDILGLLSEDINHIQNLYLRTIFPTVIAWILYIFLVIALGFFSWWFALCMLLMLGVV VFLLPLVSVLVNGARQEKHKYAKNELYQTLTDNILGVSDWVFSQRGAEFVARYETDEANV RALDEKMKQFNRGRDFVLQLLFGVIAIAVLAWTSVRFPGNHGGAANWIGAFVLTVFPLID AFAPLPAAAQETTIYKDSIRRFNELPEGEDDSTEAPVQPNGTSLSIEHLSFAYENQEKKV LNDLSLTIPEKQKLAILGRSGSGKSTLASLIRGDLRPTSGEILLGNIPTEAFGETMTEYI GVMHQAPYLFRTTILNNIRIGREEASEAEVWAVLEKVGLKEMVAQLPEGLQTMVDEAGLR FSGGERHRLALARILLQDTPIVLLDEPTTGLDPITEQQLLETFFEALKDKTVIWITHHLQ GVTLMDQVIFIEDGQLEMSGTPEELLATNAHYQKLYRIDRGISSFEE >gi|307679190|gb|GL457057.1| GENE 176 157495 - 159228 173 577 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 348 560 15 228 245 71 27 3e-11 MIDKDILQMPKIKKILVLLAGFSFLQAVFIIGQAFFLSKAIVGLWSGGHLNQQLQSILLF FIFYLGRHVITYFRERMLDTFSYERSKELREQLLTKIFRLGPNVVQKNGTGNMVTMALEG ISQTENYLQLILTKMMNMMIIPWIILAFVFTQDIRSGVTLLIVFPIIIIFMIVLGYAAQS KADKQYAAFQMLSNHFIDSLRGIDTLKLFGLSKKYAGSIYHTSERFRKATMSTLKIAILS TFALDFFTTLSVAVVAVFLGLSLLNGTILLFPALVTLILAPEFFLPIRDFSSDYHATLDG KNSFQAIQAVLALPEAEQTDVLTLDDWHQESQLSVTALNFSYEDATQEAIQSLQFSVDGR KKIGIIGASGSGKSTLINLLSGFLLPTEETSQLAINGQTIPHFLQKDWQKQILYIPQAPY IFQDTLANNIRFYTPEATDEAIQQAIQLVGLDELVKDLPEGIHTLIGESGRMLSGGQAQR VALARAFVDQKRHVLLFDEPTAHLDIETEVEMKERMLPLMNNHLVFFATHRLHWMEEMDY ILVMEKGQLVEQGTLAELIEKDGYYVQLMKQMRGGRQ >gi|307679190|gb|GL457057.1| GENE 177 159233 - 160246 1039 337 aa, chain - ## HITS:1 COG:L109201 KEGG:ns NR:ns ## COG: L109201 COG1294 # Protein_GI_number: 15672687 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 2 # Organism: Lactococcus lactis # 1 330 1 331 331 357 61.0 2e-98 MSTLQLLWFVLIGVLFSGFFFLEGFDFGVGMAVQTLAHNDDEKDQVVATIGPVWDGNEVW LLTAGGAMFASFPYWYASLFSGYYLILFTILFGLIIRGVSFEFRHNMPEGKRRRMWNWTL SIGSFLVPFFFGILFISLVQGMPLDANGNMHAQFTDYFNLFSIVGGVALTLLCYLHGMNY IALKTEGPIRERARNYAEILYGVLYVGLVVFAVLMYFKTDFYEKNFAVTLILTLAIVVLT VIANVGVFKRKEMLAFLASGLTLVVLVALLFSGLFPRVMIGSEGFDLLIKDATSTPYTLK IMTWISLSILPFVLAYTAWSYYIFRKRISQTAVPEGY >gi|307679190|gb|GL457057.1| GENE 178 160243 - 161661 1465 472 aa, chain - ## HITS:1 COG:L107726 KEGG:ns NR:ns ## COG: L107726 COG1271 # Protein_GI_number: 15672686 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 1 # Organism: Lactococcus lactis # 1 446 1 451 491 543 60.0 1e-154 MFDIVTLARIQFAMTTVFHFFFVPFSIGLALVVAIMETMYVVKKEERYRKMAKFWGNIFL LSFAVGVVTGIIQEFQFGMNWSDYSRFVGDIFGAPLAVEALLAFFLESTFLGLWIFTWDK MNPKVHVTFIWLVVFGSMMSAFWILVANSFMQHPVGYVINNGRAEMVDFVAVISNPKVWY EFSHVIMGAFTLGGMAVAGMAAFQLLKKRDISFHKASMRIGLWVTLFGSIGVLLAGDLQM KALIEGQPMKFAAMEGAYEDSDDPAAWTLIAWADEREHKQVFGIDIPYMLSILSYNKLSG SVDGMDTVNKRLVEKYGDDKNYYPPVNTLFWSFRIMAGFGALMLLVAALGLFFTRKKKPS LYEKKWMLWIVALCTFAPFLANTTGWLVTELGRYPWTVYGLFTIEQSVSPNVSVASLITS NVIYFLLFAGLGSVMVYLVILELRKGPDYEAKKLAKENEPALDPFDKGVFGE >gi|307679190|gb|GL457057.1| GENE 179 161663 - 161725 91 20 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEMNNSGKLVSLCGGKSGRK >gi|307679190|gb|GL457057.1| GENE 180 161821 - 161919 72 32 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIEEREEILGAPKKIVRNASVLFGFCLRKLYT >gi|307679190|gb|GL457057.1| GENE 181 162255 - 162551 81 98 aa, chain + ## HITS:1 COG:no KEGG:SDEG_1227 NR:ns ## KEGG: SDEG_1227 # Name: not_defined # Def: hypothetical protein # Organism: S.dysgalactiae # Pathway: not_defined # 12 92 3 83 90 63 46.0 2e-09 MTLKPFDFGANASKCFGTILNNMTLKHTIRSWCKFGCFGTILNNMTLKHELNVSDSQISF GTILNNMTLKHDYAKVNRLLRFGTILNNMTLKQKVGNA >gi|307679190|gb|GL457057.1| GENE 182 162756 - 163619 827 287 aa, chain - ## HITS:1 COG:BS_ydeE_2 KEGG:ns NR:ns ## COG: BS_ydeE_2 COG3708 # Protein_GI_number: 16077584 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 124 284 1 161 163 132 39.0 9e-31 MLANLNQAIDYIEEHLTEEVSFDELAKKTGISVYHFKRTFSFIAGMSLAEYIKKRRLAEA NLALLAGEKVTDVAFKYGYQSIEGFSRAFRDWSGQAPSEVMKTQIQKTFPKFSFYIDIKG GQSMDVKLIEKPAFQIVGVSQKVPLQYQGENQAIMELAQRITPQQRAEMHTFDDIYPHQV VNASFDFQEGRTTEGGEMTHMIGFATSQENTYEDLEQLSVPAHTWAVFPNEGPFPQTLQE TWARIFSEWLPSSGYQVVAAPEISFTQYQGPAEAKYSEIWLAVTATK >gi|307679190|gb|GL457057.1| GENE 183 163704 - 166004 2208 766 aa, chain - ## HITS:1 COG:CAC2947_1 KEGG:ns NR:ns ## COG: CAC2947_1 COG0550 # Protein_GI_number: 15896200 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Clostridium acetobutylicum # 75 657 1 615 618 459 42.0 1e-128 MQLLLKIKLSLPQYPIILAKQNSANGKLFETHEFKEKPQGIFFKLFFYSRNLEKIEPIFG IIRKDSTQKGAKLVVAKQLIIAEKPSVAKDLSRVLGANQKNKNYYEGPNVIVTWALGHLL GLKMPEDLNKEWQTWQMETLPMIPKNLGIKPLPKTGHQLKAIKQLANRKDVSEAVIATDA GREGELVARWILEYVRFNKPVKRLWISSQTDKAIKDGFKKIRPAKDYDNLYYSALARAKA DWLVGLNVTRALTVKYQDNLSAGRVQTPTLAMVRQQEKTIEQFKPQTYFTISLSVESEKA KMTQKNPYALKERQEAEQLVKELSKQKGLVTDIQEKVKTENAPLPYDLTEIQREANQRFQ FSAKKTLSLVQSLYETHKIVSYPRTDSKYLTTDMKGTMKERLQAIADFSPEVKGYLKNGA VVKQQKVFQNAKVTDHHGLIPTEQRPRYEKLSNDEQKIYQMIVQRFLGLFAEPNQTKQTK VTVAFGKETFVFHQNKVVVAGWKTTAEQPLSTVQWQKGMTVAPNFTINKELTSPPKPLTE GTLLGKMEKHSLGTPATRAEIIEKLIKSELMERTNSGLSVSAKGKQLLDLVNPSLVTPEL TEKWEKSLEAIASGQQKSQLFLKDIEEDTKKLVREIKQSEKKYQDFSITQKKCPDCGSNL REKNTKDGKIYVCTNQECSYRRRKDPKVSNHRCPQCHKKMVIIEGKNGRSFKCKFCSITE KIPDKKERKQKMTKHEERRLMKKYSQPDEPEESALAQALKAAMNQE >gi|307679190|gb|GL457057.1| GENE 184 165916 - 166281 316 121 aa, chain - ## HITS:1 COG:L100735 KEGG:ns NR:ns ## COG: L100735 COG4699 # Protein_GI_number: 15673831 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Lactococcus lactis # 1 119 1 119 122 99 43.0 1e-21 MYQVITMYGDNEPWWFFDDWQEDIVQEKTFDNLTDAETYYVEVWQKLSQNYTYVNTKPNY LTAFWNDGEERWCEECDEDLQQYFGLALLENHHAVTFENKAEFTTISNHFGKTKFCKRKV I >gi|307679190|gb|GL457057.1| GENE 185 166379 - 166948 707 189 aa, chain - ## HITS:1 COG:CAP0028 KEGG:ns NR:ns ## COG: CAP0028 COG1309 # Protein_GI_number: 15004732 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 3 185 2 183 187 171 50.0 8e-43 MAKKRNLTKAKILESARNLAEELGVHQLTFQNLAVDLGIKYPSLYNHFKNIAEVKNALVD LLIQELNDALRRALVGKSGAEAIRIYAETYQQFAFENSAVYELLISVPKTQNQQLIEGIH ETNQIILQLLAFYPFNNEERLHKSRELRSLIHGYITLRFLGYFQREEATPEESYRRMIED FIASLEVAG >gi|307679190|gb|GL457057.1| GENE 186 167081 - 167596 615 171 aa, chain + ## HITS:1 COG:BS_yxkA KEGG:ns NR:ns ## COG: BS_yxkA COG1881 # Protein_GI_number: 16080938 # Func_class: R General function prediction only # Function: Phospholipid-binding protein # Organism: Bacillus subtilis # 1 170 3 165 168 113 38.0 2e-25 MHITNRSHLADRYGKRTSAEFLLHERPILSFPISLAAIPKEARYLSWELIDYDTIPLIGF PFIHWLAANVPVTNEIPEDFSRTALKPTIQGKNSLASPLGKQMIPALATETLPELTERYL GLSPRSGVHTYTLYVYATKNPLNLKEGFFANELHQALNDQRLAKAKFEFLY >gi|307679190|gb|GL457057.1| GENE 187 167613 - 168845 1160 410 aa, chain + ## HITS:1 COG:lin2884 KEGG:ns NR:ns ## COG: lin2884 COG0477 # Protein_GI_number: 16801944 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 16 396 4 384 402 420 55.0 1e-117 MYELIKSKIFRPRQPWEKNLLVLWFGTFMAGIGFSLVMPFMPLYINTLGTFTHQQLNFWS GITFSSTFLVTTIVSPWWGRLADRKGRKLMLLRASLGMAIVISLMGAVTSVYQLIGLRLL QGVFSGYISNATALVATGTPKEKSGQVLGTLATGSVTGTLLGPLLGGVTASIFGYRPTFF ITGTILLLVFVLSLVFVHEEFVPIEKNQAASGKQILKKLEHPHVILGMFITTLIIQASNN SISPIISLYIQQLLGGHGNVTLISGVIASIPGIATLIAAPRFGRLGDRIGSERILTIGLI LAIFVYLPMAFVQNVWQLAMLRFLVGISDACLLPAVQTLITRYSPSDAAGRIFSYNQSFQ ATGNVIGPMIGSSVSAAFGYRGVFISTSCLVLLNLLWVRRSTAELKKREK >gi|307679190|gb|GL457057.1| GENE 188 169032 - 170156 1357 374 aa, chain - ## HITS:1 COG:SPy2188 KEGG:ns NR:ns ## COG: SPy2188 COG0482 # Protein_GI_number: 15675922 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Streptococcus pyogenes M1 GAS # 1 374 1 373 373 561 76.0 1e-160 MADNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCTATEDYKDVA KVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQLG ADYVATGHYAQVETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGMEKSEVR AIADRAGLATAKKKDSTGVCFIGEKNFKEFLSNYLPAKKGNMVTEDGEIKGQHDGLMYYT IGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVHFTVDTPM PKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVFYDGMECLGGGL IDRAYQDEKELQYV >gi|307679190|gb|GL457057.1| GENE 189 170382 - 170726 437 114 aa, chain - ## HITS:1 COG:no KEGG:EF2071 NR:ns ## KEGG: EF2071 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 114 1 114 114 208 100.0 5e-53 MAFTTTAAVEGSTVFYKVHPSAKRYTLKDNGFTETKSGNFQLIRSLDPTPQRNEGFKLKI TITADLKELKMSITTANGLKPMNIFKNEQHEMSKEKYFFLMDGLISRGVLEKVE >gi|307679190|gb|GL457057.1| GENE 190 170794 - 171939 1240 381 aa, chain - ## HITS:1 COG:lin1548 KEGG:ns NR:ns ## COG: lin1548 COG1104 # Protein_GI_number: 16800616 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Listeria innocua # 4 381 5 381 382 408 56.0 1e-113 MEPIYLDHAATTPLHPTVIQAMTENMQTTFGNPSSIHQFGRKAHGLLEEVRQTIAESLQA KPHEIIFNSGGTEGDNTAILAVAFSRQKEGKHIITTAIEHPAVLRTMEYLETLGFEVTYL PVNENGQISMDQFKKSLREETILVSMMYGNNEIGNRLPIAEVGAILKNHSAIFHTDAVQA YGSEVILPHELGIDLLSISAHKINGPKGVGFLFKSDAIQLPPLLHGGEQEEKRRAGTENL AGIIGMGTAVSLLTSTEKQARKTAYQSFQTIILKALEEANIDFSINGEPTNRLAHVLNLH LKGIPSDLLLMHLDLRGIAISTGSACTAGTVDPSHVLTAMYGENSSAIKESIRISFGYGN TPEEIATFSEVLVAVIQQLKK >gi|307679190|gb|GL457057.1| GENE 191 172096 - 173070 1192 324 aa, chain - ## HITS:1 COG:SPy1123 KEGG:ns NR:ns ## COG: SPy1123 COG0462 # Protein_GI_number: 15675103 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 324 1 323 326 414 61.0 1e-116 MTENYQDDTLRIFSLNANRPLAEKIAASVGTELGKSTVRQFSDGEIQINIEESIRGDHVY IIQATNAPVNDHLMELLILIDALKRASAKTINVILPYYGYARQDRTAKPREPITAKLVAN MLVEAGATRLLTLDLHTVQVQGFFDIPVDNLFTMPLFAHYYRQQALVGEEIVIVSPKNSG VQRARSLSEYLDATLAIVDHEEIDGVRQEGYVIGNVAGKKCILVDDILNTGQTLATAAEV LMKNGAQEVYACTSHGLLSEGAKATLENAPIKEISITDSVYTTADRQPATLNIISCAELM GEALLRIHENKPMSPLFRLEPKGE >gi|307679190|gb|GL457057.1| GENE 192 173283 - 174032 189 249 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 22 226 17 227 245 77 28 5e-13 MRKSFNLAVQALTVQYQGRTALNNIHVTIPSGKITGIIGPNGAGKSTFIKGLLGLIKTKE RDVLLNNQAIDQQKTTIAYVEQRSALDLSFPISVFETVLLGTYPNLGLLKRPGKKEKQAA MAALKMVQLEDYAQRQIGELSGGQLQRVFIARVLAQGAEVIFLDEPFVGIDMSSEKVIMD ILKSLKNQGKMIIIVHHDLHKVSHYFDELIVLKNRLIAAGPVEQTFTAETLQEAYGDLLG DLLIQGVAK >gi|307679190|gb|GL457057.1| GENE 193 174029 - 174898 988 289 aa, chain + ## HITS:1 COG:lin1962 KEGG:ns NR:ns ## COG: lin1962 COG1108 # Protein_GI_number: 16801028 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Listeria innocua # 5 282 3 280 280 285 67.0 7e-77 MIAAFIDGLFRYQFLQNALLTSVIVGLISGVIGSFIILRGMSLMGDAISHAVLPGVAVSY MFGFNYIFGASIFGLLAALSIGFITQKSPLKNDTAIGVVFSSFFALGIIFISFAKSSTDL YHILFGNVLAVADTDILITCVVGVIVLIFVALFYKELQLTSFDPTMAQAYGLNIQFFHYA LMFLLTLVAVSSLQTVGTILVIAMLITPAATAYLLTNHLPTMIGLASTFGILSSVIGLFF SYSYNLASGATIVLTAALFFLLAFFFSPKKGLVFVNREKEMEESTNEKI >gi|307679190|gb|GL457057.1| GENE 194 174885 - 175811 1313 308 aa, chain + ## HITS:1 COG:lin1961 KEGG:ns NR:ns ## COG: lin1961 COG0803 # Protein_GI_number: 16801027 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Listeria innocua # 15 305 14 308 310 346 61.0 4e-95 MKKFSLFFLTLLAGLTLAACGNQAAKKKEKLAIVTTNSILSDLVKNVGQDKIELHSIVPI GTDPHEYEPLPEDIAKASEADILFFNGLNLETGGNGWFNKLMKTAKKVENKDYFSTSKNV TPQYLTSAGQEQTEDPHAWLDIENGIKYVENIRDVLVEKDPKNKDFYTENAKNYTEKLSK LHEEAKAKFADIPDDKKLLVTSEGAFKYFSKAYDLNAAYIWEINTESQGTPEQMTTIIDT IKKSKAPVLFVETSVDKRSMERVSKEVKRPIYDTLFTDSLAKEGTEGDTYYSMMNWNLTK IHDGLMSK >gi|307679190|gb|GL457057.1| GENE 195 175866 - 177404 1692 512 aa, chain - ## HITS:1 COG:CAC3339 KEGG:ns NR:ns ## COG: CAC3339 COG0488 # Protein_GI_number: 15896582 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Clostridium acetobutylicum # 1 509 1 512 518 427 43.0 1e-119 MSILTIEHLTHRFGEKVLYEETSLQVNKGDHLGLTGQNGVGKSTLIKILTGEVLPDEGTI QWQKNCKIGYLDQHVSVEQSLTMVDFLKQAFQELFDKEAKLTKLYEEYSQTASEKLLEQA GKLQTDLDESNFYQIDTIIQDLANGLGLQAIGLDKKLGELSGGQRSKVILAKLLLEAPDV LLLDEPTNYLDDTHIQWLVRYLNNFEGSFLLVSHDYQFLNEVTNCIADIEFGKLTKYTGN VEKSFAQKEQNKQTYLKQYQAQQEKIEKMEAYIRKYKAGNRATMAKSRQKQLDRLERLTP PGSLTKPAIEFPYQGLVATQALTTQKLVVGYREPLLEPLDLMVHVGEKVALKGFNGIGKS TLIKTLTKVIPSLDGEFHYPLNTKIAYFTQDLAWPDEQLTPLDYLSDRFPDTTIKERRSH LARAGLPDKLAMQSLALLSGGEQTKVKLAELMMQTSNLLFLDEPTNHIDEAAKKSLQEAI HVYPGTVFLVSHEADFYEEIVDRVIDIEELVK >gi|307679190|gb|GL457057.1| GENE 196 177552 - 177659 121 35 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFFVLTDKLTRKVAPDSLRTDEALLWSRAINFFIA >gi|307679190|gb|GL457057.1| GENE 197 177774 - 178967 1793 397 aa, chain - ## HITS:1 COG:lin0542 KEGG:ns NR:ns ## COG: lin0542 COG1473 # Protein_GI_number: 16799617 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Listeria innocua # 9 397 5 390 393 266 38.0 5e-71 MSTTTIQTIQEAIATEKEWIIHLRRHFHQYPEASLKEYETIKRIKEELLALAIPFVEVGE TGVLATIEGGLGAGKTILLRADIDALELPDATGTAYASKNPGLNHACGHDGHAAALLGAA KVLKKHQDTFSGTIKLAFQPAEEIGAGARQFVEGNYLEAIDQVFGIHLDSSVPVGKLVAT KGATNASCDIFKIEVSGQSSHVAQPQNGRDAVLAAASIVVELQKIVAREIDPLDSVVVGI GVLQAGTRYNIVANQATIEGTVRTFSQETRQFVLQRVEEIAHEIAQSHRTEIADFSVYAA ANPLINEEQATNRAQQVASEIVGFENVVTDHPKSLGADDFADYLAVIPGIYGRVGSRNPE NPATHFGHHHEQFDIDERALLLAAEYHVRYALNYLSE >gi|307679190|gb|GL457057.1| GENE 198 178982 - 179815 1064 277 aa, chain - ## HITS:1 COG:L118475 KEGG:ns NR:ns ## COG: L118475 COG1464 # Protein_GI_number: 15672301 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Lactococcus lactis # 26 271 32 281 286 212 50.0 5e-55 MKKFSKLIGLIGVLAFTIAGCASGSAKDTKTETVKLGVVGTKNDEWESVKERLKKKNIDL QLVEFTDYTQPNAALAEKEIDLNAFQHQIFLDNYNKEHGTKLVSIGNTVNAPLGIYANKL KDITKIKDGGEIAIPNDPTNGGRALILLQTAGLIKVDPAKQQLPTVSDITENKRQLKITE LDATQTARALQDVDASVINSGMAVDAGYTPDKDAIFLEPVNEKAKPYVNIVVAREEDQEN KLYQKVVEEYQQEETKKVIAETSKGANVPAWETFGKK >gi|307679190|gb|GL457057.1| GENE 199 179834 - 180514 894 226 aa, chain - ## HITS:1 COG:L122401 KEGG:ns NR:ns ## COG: L122401 COG2011 # Protein_GI_number: 15672305 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Lactococcus lactis # 1 226 1 230 231 183 53.0 2e-46 MYQLFEKYFPNVVQLKQEFLQSTWETLYMVFWTALIAGVLGVLLGVVLVSTGPSGVLKNP PLYSVLEKIINVCRSIPFIIMLALIQPLTRILAGTTIGTTAALVPLVIGVIPFFARQIEN ALLEVDPGVIEAAEAMGTSPLGIIFRVYLIEGLPSIIRVSAVTIINLIGLTAMAGAIGAG GLGNLAITRGYNRFQTDVTFMATLIILIMVFISQAISNQLIKKTSH >gi|307679190|gb|GL457057.1| GENE 200 180533 - 181603 1153 356 aa, chain - ## HITS:1 COG:SPy0320 KEGG:ns NR:ns ## COG: SPy0320 COG1135 # Protein_GI_number: 15674484 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Streptococcus pyogenes M1 GAS # 1 342 5 351 354 363 56.0 1e-100 MIELKNISVTFQQKKQEIQAVQDVSLTIDKGDIYGIVGYSGAGKSTLVRVINLLQRPTAG TVIINKENILTFSKKELRQQRKKIGMIFQHFNLMKERTIFSNIDFSLKYSGLSKTERRQK ISHLLELVGLSEKRDAYPSQLSGGQKQRVAIARALANDPEILLCDEATSALDPKTTGQIL ALLKKLNQELNLTIVLITHEMQVVKEICNKVAVMENGCVVESNDIVSIFSQPQQPLTKDF IRTATHIDQALTTILEHPKLADLDKNQELIEFSYVGDQTNEPLIAQLYSQYQVYTNILYG NVEIVQNVPIGHLIVVLSGDEAQRQQALAYLAKQGVRTNVLKTYQQTKKKQNLQVI >gi|307679190|gb|GL457057.1| GENE 201 181708 - 181845 59 45 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLPPHVQNLLTQIPFSSTEQHVRYPSSITGAPVAALCLTLGALAQ >gi|307679190|gb|GL457057.1| GENE 202 182124 - 182195 89 23 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLSAVTRRSMAFVSDEQYKVTEG >gi|307679190|gb|GL457057.1| GENE 203 182698 - 182862 78 54 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315143352|gb|EFT87368.1| ## NR: gi|315143352|gb|EFT87368.1| hypothetical protein HMPREF9495_02850 [Enterococcus faecalis TX2141] # 1 54 1 54 54 73 100.0 4e-12 MLIYTLLEKKEIVNSFSQKKNHFSFFTKEQLTNFRLYVILFLVHEICTIFQKEL >gi|307679190|gb|GL457057.1| GENE 204 183181 - 184671 914 496 aa, chain + ## HITS:1 COG:no KEGG:EF2146 NR:ns ## KEGG: EF2146 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 496 1 496 496 860 99.0 0 MMKQLPTESKKFDLKNWCIENKAYLLLIILIYQVAVLSIGIINFPYLDDNARQVAGMTDF GTTYARWGSEFLSWFVQGSRHLTDLGLTTPILTGLILSLTSILAIYIINDQKISWGSSLV ATLIGLNPWFLQCLSFRFDSPYMALSIFCSFLPFYWWQRNSFTFFLVSVFSLFVMFNTYQ ASSGIYIVIVLFLTFKQLLAGENFIALCKKVALAAIAYLLSIVSYLIELKFVPSATNNIG GSQALPSLHDIPSVAYQNSYHYFSELLNQSNRLWLLLLLLLLVLFFISHLSNSKINLGLS FLYCILYLGLASLLSFGIFIVYSRNIAGDAPRYIYGFAVFVTISMLSLFNNRQVKAIYLT SLLVASLLSYYILSFVLVYSSTLNYQKEAFNRQAAILTDDLKNVVTNERKKVYLNTFFKN STVYANTSRNYPILSKIVPPNDGLYFPNYVWFNTSSNLGVEMAPLTDTDMSKNQKVVSNH FYDIYTNNKEIFVFMK >gi|307679190|gb|GL457057.1| GENE 205 184885 - 185064 168 59 aa, chain + ## HITS:1 COG:no KEGG:EF2147 NR:ns ## KEGG: EF2147 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 59 5 63 63 87 98.0 2e-16 MRTHQKKLFLFSMILWLVEFLITRISDSFPGATPLFVVICLIQGILFTYFCLAFFYYPQ >gi|307679190|gb|GL457057.1| GENE 206 185152 - 186117 1036 321 aa, chain - ## HITS:1 COG:no KEGG:EF2148 NR:ns ## KEGG: EF2148 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 321 1 321 321 503 99.0 1e-141 MSTIHEFPKNYERFIAQGEEALVEHNQIAALENFQQAYQLQQTPPVNQKIVQLLLEMGEA DEALALAEAFQESYFENLETAAIYMQIYSQSRRFIEGYILLKQLLQTKKITLAQQKTLEQ QLMQVEEAYQQLETQQIQAIKRNLLVSDQLPVYQQLANIKTSLYLPKPVFVEVAKDLVMN QALSYFAREWFIEELALLQFSEPLTFLWYDNQPQTVLLEGKTGPLNTPIYSEICTELRNR LENDDPIMLQHLEEEIRLHLAYLYPLAETVISDPTIWVLGYLATYYPEYIEKELTEAKSH QIAAVQKVQQAIRTAFTQIML >gi|307679190|gb|GL457057.1| GENE 207 186293 - 186583 485 96 aa, chain - ## HITS:1 COG:no KEGG:EF2149 NR:ns ## KEGG: EF2149 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 96 1 96 96 147 98.0 1e-34 MENQVEVMTYAQLKEIMQALEANEAITEDTKVFIDTGWDSVQEVAPDAVSIEKVAKFTVA DVLTNESFAGYSLEEKAEKMNAEGDLETAIIIRNLY >gi|307679190|gb|GL457057.1| GENE 208 186631 - 187911 1451 426 aa, chain - ## HITS:1 COG:SP0616 KEGG:ns NR:ns ## COG: SP0616 COG2348 # Protein_GI_number: 15900524 # Func_class: V Defense mechanisms # Function: Uncharacterized protein involved in methicillin resistance # Organism: Streptococcus pneumoniae TIGR4 # 18 422 3 407 410 276 36.0 7e-74 MLIYLTKKDCELFDMDQFSTLTEQEFTTFAMTHPAGNFLETPEMKHLLERRGWHCEYVGV KREGQLIAACILSKKKVKIGYAFDIDGGILMDYTDKKCVEAFFTGLKKYVKKNDGLYLTF TPNKQICLRDFNGGEVEKVNQETFDYFTSIGFEHQGFDVHNFDGAPRWLFVKDMAGLTEE ELWKSYGKDAKYDIKKTWEYGVTTRELRYEELPLFKKLTEETSARRNFEDKDLAYYQAVY EEFGERAKFMVAELNFATYLENLHEKLRKLQETLNEVNEALIANPKSRKKNNQKREFEDE VRTVRKRIDEAKEMKTSDEPEILAGALFIVHPQEVVYLFSGTYEKYKQYYAPYLIQHKML TYTVENNIPKYNFYGVDGVFDGSDGVLKFKQSFGGHVEELMGNFQWKAKPMKYALYHALK TIKEKV >gi|307679190|gb|GL457057.1| GENE 209 188180 - 189988 2136 602 aa, chain - ## HITS:1 COG:SP0266 KEGG:ns NR:ns ## COG: SP0266 COG0449 # Protein_GI_number: 15900200 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Streptococcus pneumoniae TIGR4 # 1 602 1 602 602 743 63.0 0 MCGIVGMIGKENVTESLIQGLTKLEYRGYDSAGICVNDQSQQPHVVKAVGGIADLAAKLT PEIDGTVGIGHTRWATHGEPTVANAHPHVSSDQRFALVHNGVIENFEELKEQFLSGAHLI GDTDTEIVVQLIAHFAENGFSTKDAFKAALAEIKGSYAFALMDKMDPNTIYVAKNKSPLL IGLGEGFNVICSDAMAMIKETNQFVEIVDGEIVTVTADKVVIETPEGQVINREPFEAQLD LNDIEKGTYPFYMLKEIDEQPAVMRKIVQAYTQGEKVTLDEALLEKINQCDRIYIIACGT SYNAGWVGKSLIETIASIPVEVHLSSEFGYNMPILSEKPFFIFLSQSGETADSRQVLVQV NELGHPSLTLTNVAGSTLSREADDTLLLHAGPEIAVASTKAYTAQIAVLAILAKAIGEER QTLAAVSFDVAHELSVVAAVMETLIDEKQQMKALVEDYLTYTRNAFYIGRGVDYYVSMEA ALKLKEISYIQAEGFAAGELKHGTIALIEEGTPVIGIVTDAKVAAHTRGNLKEVESRGAR NIVIALESLAKPQDQLIIPDVHPLLSALVSIVPGQLLAYYATLQRGYDVDKPRNLAKSVT VE >gi|307679190|gb|GL457057.1| GENE 210 190431 - 191264 906 277 aa, chain - ## HITS:1 COG:SA2475 KEGG:ns NR:ns ## COG: SA2475 COG0619 # Protein_GI_number: 15928269 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Staphylococcus aureus N315 # 1 277 1 277 277 312 57.0 5e-85 MSERQMLGYHPDSTWIHRLNGTSKLVFLIVVSVACMTTYDTRYLLGMSVVSLVLLKLSNI KWHQISFVIKFIAIFSLLNILTVYLFAPEYGVDLYQSRTVIWEGIGRFTLTQEELFYEFN LVLKYFCTIPLALIFLLTTNPSEFASSLNRIGVSYRISYAVALAIRYIPDIQEDFFNISL AQQARGYEMSKKGRLGQRIKGVAQIVLPLILSSLDRIETVSTAMELRRFGQKKNRTWYAQ QPFHLRDFSVMILALCLLGISFWLFHVNGGRFYNPFQ >gi|307679190|gb|GL457057.1| GENE 211 191261 - 192967 278 568 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 305 556 134 384 398 111 31 2e-23 MKKPIITFNNFSFQYHSQSEPTLKGIQLTIYEGEKVLIVGPSGSGKSTLAQCINGLIPNI YEGEIQGTATVAGKNIQETSLFDLSFDVGTVLQDTDGQFIGLTVAEDIAFALENDAVEQA EMKKAVHKWSEIVELNQLLQHRPQDLSGGQKQRVSMAGVLINQSKILLFDEPLANLDPRA GQETMTLIDTIQQETKATVLIIEHRLEDVLCESVDRIIVMNEGAIISDTTPDELLRQDTL TQQGIREPLYVTAMKYAGIDLTQVSHLDKLAEVSGETVLPKMTQWSVQPSSVSAVKGAEL LRLEQVSYQYDRHGEKVLDDFSVTIHHGEMISIVGKNGAGKSTLSKIICGFITPQSGKIL WEGQDFSNYSIKERADKIGYVMQNPNQMISKKMIFEEVALGLVLRDVPQAEIEERVTNIL HICGLYPFRNWPISALSFGQKKRVTIASILVLEPELLILDEPTAGQDFKHYTEMMTFLEE LNRLGVTILMITHDMHLMLEYTTRALVVCDGRLLADATPVAVLTDEKLIQAASLKETSLF TFAKALGLENPLLFTEKFVAYDREVRFG >gi|307679190|gb|GL457057.1| GENE 212 193068 - 193619 490 183 aa, chain - ## HITS:1 COG:SA2477 KEGG:ns NR:ns ## COG: SA2477 COG4720 # Protein_GI_number: 15928271 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 2 183 3 184 184 234 67.0 4e-62 MKEKMSVKTIVAIGIGSAVFVILGRFVVIPTGIPNTNLETSYPFLALMSVVFGPVAGGLI GLIGHTLKDFTTYGSAWWSWIICSGIIGIIFGFAGRKMDLQHGEFTTNDMVRFNIFQAFG NIVVWGLIAPSLDILIYSEPASKVFTQGVFATVSNIVAVGIIGTLLMKAYASTRTKKGSL SKD >gi|307679190|gb|GL457057.1| GENE 213 193849 - 195204 1877 451 aa, chain - ## HITS:1 COG:SPy1038 KEGG:ns NR:ns ## COG: SPy1038 COG1109 # Protein_GI_number: 15675035 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Streptococcus pyogenes M1 GAS # 1 451 1 450 451 606 71.0 1e-173 MGKYFGTDGVRGIANKELTPELAFKLGRYGGYVLSQHEDSSRKPRVLVGRDTRISGEMLE QALIAGLLSVGIEVFQLGVISTPGVAYLTRLQKASAGVMISASHNPAEDNGIKFFGADGF KLVDDQEAEIEALLDAEEDTLPRPSAEGLGSLDEFPEGLLKYSQFLVQSIPGDLADMTVC LDAANGATATAVNRVFADLETDFYTMGTSPNGLNINDGVGSTHPEALAEMVVEKGADAGL AFDGDGDRIIAVDELGRIIDGDKIMYICAKYLAEKKRLKKDTIVTTVMSNLGFHKAVEEI GLKDVVTQVGDRYVVEEMRKNDYNFGGEQSGHMIFLDYNTTGDGMLSGIQLLNVMKQTGK KLSELADEVTIYPQKLVNIRVTDKNGAMEVPAIKAVVEQAEAEMNGEGRILVRPSGTEPL LRVMAEAPTQEKVDYYVDKIAEVVRAEIGVE >gi|307679190|gb|GL457057.1| GENE 214 195197 - 196360 1373 387 aa, chain - ## HITS:1 COG:SPy1037 KEGG:ns NR:ns ## COG: SPy1037 COG4856 # Protein_GI_number: 15675034 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 2 312 3 314 318 146 33.0 7e-35 MRKASQKSWFNGLLSLLFALLLFFNANATGNNPSNSGSSQTYSETLNNIPVQVQYDKDKY YVSGFEESVNVHLRSANRIQLNMESNADTRNFQVVADLTKLPLGTSEVPLTVRGLSSAVT AEIEPKTVTVTIEKRVTKKFDVEAQLSDNIEKEGYKVKNISVDPKTVEVTTGEETAKAID KVIAPVSSAKQTIDTIKQTVNVQALDAKGQVLSIENPAPQVKVTVGLTAPTKDVPLNVSM TGTPPAGIAHYNYSLSTYQVRVSGPQSILDTLESIEVPVDISDIRKETKQSVTIPVNGEY VVTPDEVDVSLSPVYNQQQSSNTNETSGEPASSTTVGSGSQAVQPSTSSQVESNTSETTS EGSTVESTTAGSTENTENQVTKENQNG >gi|307679190|gb|GL457057.1| GENE 215 196357 - 197241 994 294 aa, chain - ## HITS:1 COG:BS_ybbP KEGG:ns NR:ns ## COG: BS_ybbP COG1624 # Protein_GI_number: 16077243 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 30 268 14 253 273 291 60.0 9e-79 MSFQLNQLLDLNYWQQVISTDFLSKDFVINIIDILVVWYLVYKLIMLVRGTKAVQLLKGV AVFIIIRILSEIIGLHTLSWLMNQVIMYGVIAAVVIFQPEVRRGLEHLGRSSFFRPNKGA QQEDERIIQAFDKAIQYMSKRKIGALITIERNTGLDEYIETGIDLDADITGELLINIFIP NTPLHDGAVIIKNEKIAVASAYLPLSESNLIPKEFGTRHRAAVGISEVSDAITIVVSEET GDVSLTLNNELIPGLTQEEYLTILRKELISESSEDKKSALQHFIDDVTKGVKRK >gi|307679190|gb|GL457057.1| GENE 216 197438 - 201127 3915 1229 aa, chain - ## HITS:1 COG:lin0824_1 KEGG:ns NR:ns ## COG: lin0824_1 COG0674 # Protein_GI_number: 16799898 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit # Organism: Listeria innocua # 1 416 1 414 414 614 70.0 1e-175 MRKMKTMDGNAAAAYISYAFTELAAIYPITPSSTMAELVDQWSAEGKKNIFGQPVKVVEM QSEAGAAGVVHGSLKTGALTTTYTASQGLLLMIPNMYKIAGELLPSVFHVASRAITTNAL NIFGDQGDVMAARQTGFAMLSESSVQEVMDLAPVAHLASIEASVPFMNFFDGFRTSHEIQ KVAVLDYEELAPLVNQEKLAEFRRRSMNPNHPSVSGMNQNPDIHFQQRETINPYYEKLPG IVQKYMTEINRLRGTNYDLVTYYGAEDAEEVIVTMGSVAQTIEQTVDYLQEQGRKVGFLN VHLYRPFPVETFLEKIPQSVKAIAVLDRTKEPGAGGEPLLLDVQSAMYEADIRPTIIGGR YGLGSKDVLPNQIVAVFDELMKERSAMKKRFTIGIDDDLTYTSLEVGKPLDLTNPKTYQA KFWGFGSDGTVGANKSAIKIIGDHTDKYAQGFFYYDSKKSGGLTVSHLRFGETPIRSTYL IEHSDFVACHTAAYLHTYDLVKGLKKGGTFLLNTIWNDEQLARFLPNQLKRYLAENEIQF YTINAVKLASEVGLGGRINTAMETAFFKLAEIMPFEQVLPILKEEALKSYGHKSMKVVEK NIQAIDKTVELLHQVPVPAEWKTLEVQPRKRSENVSDFVHEIVEPINRQEGNALSVATLA KNGMTDGRMPLGTAAVEKRGVALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTE APEGFIVRDLRGADGLKYRIQVSVKDCTGCGLCVEACPAKGKALVMKPYEEEKEQAMNWA FAMTLRQKENPAKPNTVLGSQFNKPLLEFSGACSGCGETPYVKLLTQMFGDRMLIANATG CSSIWGAAAGVTPYTTNEQGQGPAWSNSLLEDNAEFGYGMLLATQARRERLASKMTKAFS VASDSLRLLMEDWIAHLSESEGTQQRAAKLRAALLEEKTNQPLLEAIYDDQDLFVKPSQW MIGGDGWAYDIGYGGIDHVLASGADVNMLVLDNEVYSNTGGQTSKATPASAIAKFAASGK YASKKDLGMMAMTYENVYVAQIASGANQMQTIKAFEEAEKFPGPSIIIAYTPCITHGLAG GMSQTLKEAKDAVHSGYWSLYRYNPLLREKGKEPMTLDFKKPDFSLMKEFMRQQVRFASL ESSQPDTAELLFNKTINDAKRRFYNYARLAGQEEKIRAKLEKQSEPEITALENEKPRVKK ERVVDPEAEARRAARRAERAAKRKQREQD >gi|307679190|gb|GL457057.1| GENE 217 201427 - 202767 1508 446 aa, chain - ## HITS:1 COG:lin1337 KEGG:ns NR:ns ## COG: lin1337 COG0174 # Protein_GI_number: 16800405 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Listeria innocua # 7 446 5 444 444 714 75.0 0 MTRKAKTAEEIKHIAEEENVRFLRLMFTDIMGTIKNVEVPVSQLDKVLDNKMMFDGSSIE GFVRIEESDMYLYPDLSTWMIFPWESDHGKVARLICDIYNPDGTPFAGDPRGNLKRALAD MKELGFTSFNLGPEPEFFLFKLDENGEITTDLNDKGGYFDFAPTDLGENCRRDIVLELES LGFEVEASHHEVAPGQHEIDFKYADVVDACDNIQTFKLVVKTIARKHGLHATFMPKPLFG INGSGMHCNMSLFNEEGNVFYDESGEMGLSQTAYHFLGGLLKHARAYTAVCNPTVNSYKR LVPGYEAPVYVAWSGRNRSPLIRVPESRGLSTRLELRSVDPSANPYLTMAVLLQAGLDGI RNELTPPPAVDRNIYVMNEEERQHAQIEDLPSTLHNAIKELRKDQVMIDALGRHIFANFV EAKRMEWAAFRQTVSEWEREQYLELY >gi|307679190|gb|GL457057.1| GENE 218 202810 - 203193 444 127 aa, chain - ## HITS:1 COG:SPy1878 KEGG:ns NR:ns ## COG: SPy1878 COG0789 # Protein_GI_number: 15675697 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 115 1 112 123 144 67.0 5e-35 MREKELRRSMSVFPIGTVMKLTDLTARQIRYYEEQGLIHPERSEGNRRMYSLNDIDVLLE IKDYLSDGLNMAGIKRVYEMKLEEQKNTAEATRPLTDADVRQILYDEILSQGGLTQQNPF QSNVPRL >gi|307679190|gb|GL457057.1| GENE 219 203396 - 204637 583 413 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 [Roseobacter sp. AzwK-3b] # 24 390 30 406 425 229 38 9e-59 MTTHEKVILVGVETEKNYQTFSASMEELANLTETANGEVVFVLTQKRPQVDRQTVIGKGK LEELIQLTDAYEADLVIFNHELTPRQNQLLSEALAVRVIDRVQLILDIFALRARSKEGKL QVELAQLDYLLPRLAGQGKQLSRLGGGIGTRGPGETKLESDRRHIRNKILGIRRELKEVT AHRERSRQKRQNSELFQIGLIGYTNAGKSTILNMLTTAGTYSEDQLFATLDPLTKKWQLP QGMEVTLTDTVGFIQDLPTQLIEAFQSTLEESRTMDLLLHVVDASAPDRLQHERTVQTLI KELALENIPCLTVYNKRDQVDSKEFVPTLFPNVLISTKISEDKERLVQAIRAQMMELLEP YQLEISPTDGQLLSELRRMTLMVSEEYAENENRYIVKGFAKKESKWLAESEKE >gi|307679190|gb|GL457057.1| GENE 220 204641 - 205570 847 309 aa, chain - ## HITS:1 COG:L15012 KEGG:ns NR:ns ## COG: L15012 COG0324 # Protein_GI_number: 15672608 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA delta(2)-isopentenylpyrophosphate transferase # Organism: Lactococcus lactis # 3 297 5 288 294 284 54.0 1e-76 MEKVLVIVGPTAVGKTALSIALAKKFNGEIISGDSMQVYRSLDIGTAKVTETEKEEIPHH LIDCREVSETYSAADFQKEGRQKIKEITEKGKLPIIVGGTGLYIQSLLYDFQLGSREIDD SPEIRETYNLFAEEKGNQALWQLLQQKDPLAADSIHFNNRKKVIRALEVFDKTGYSILTP KEKPARLYDYYLLGLETDRALLYERINQRVDQMMTEGLLEEAKQMFQQPHAQAAQGIGYK EFFPYFSGEQSLEMAVETVKQQSRRYAKRQLTWFRNRMAAHWWDLVQQPTDLPKLEKEVA EWLQQKESE >gi|307679190|gb|GL457057.1| GENE 221 205571 - 206317 673 248 aa, chain - ## HITS:1 COG:L1007 KEGG:ns NR:ns ## COG: L1007 COG0584 # Protein_GI_number: 15672046 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Lactococcus lactis # 2 247 34 281 281 218 44.0 7e-57 MTDIIAHRGSKGTHPENTCIAFREAVRIGAEGIELDVHLSKDGYLIVMHDETVDRTTDGH GEIQQLTLNELKQLDAGSWFQKNPSVQCVPTLEDVLNCLVEEQFNGFLNIELKTDIIHYE GIEKKVVQQMNQKNWPFRYLYSSFYFPSLVKLKKADPKTEIAFIYESAEDLSQAGPAFAL VDSLHPKMSWMLAHEKELITIGKPLRPWTVNRMEEMENCFQLKLAGVHTDFPEEAKFARQ NWQEEGET >gi|307679190|gb|GL457057.1| GENE 222 206474 - 207424 1041 316 aa, chain - ## HITS:1 COG:L12335 KEGG:ns NR:ns ## COG: L12335 COG0451 # Protein_GI_number: 15672193 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Lactococcus lactis # 3 315 6 313 313 383 63.0 1e-106 MESFLITGGAGFIGSTLANYYSKDNQVVVIDDLSMGQTENLNVSENITFIEGSVTDQQLM EKVLREYQFDYIFHLAAIASVADSVARPVETHQVNFESVLQLLELIRKYQKDLKRLVFAS SAAVYGDEPTLPKQEESVIRPLTPYAVDKFASEKYVLNYCHLYDVPTSAVRFFNVYGPNQ NPNSPYSGVISIVMDSYKRLLANQEVTFNIFGDGKQSRDFVFVEDVVQALNLVAHSDQSL GEVYNVGTGKATDLNELISSLNDIMKVTLPVEYKEARAGDIKDSLADISKLRAIGYKPKY SIQSGLDKYVNYELKD >gi|307679190|gb|GL457057.1| GENE 223 207636 - 209183 582 515 aa, chain + ## HITS:1 COG:no KEGG:MPTP_0537 NR:ns ## KEGG: MPTP_0537 # Name: not_defined # Def: repeat unit transporter # Organism: M.plutonius # Pathway: not_defined # 1 514 1 514 518 524 63.0 1e-147 MQKKSRLEYSIINSSISTIIFILTIGIQFISRTIFIRFLGIEYLGLNGLFTNILSMLSLA ELGVGTSIIFSLYKPLQQEDTATIKALMHLYKKIYNIIGIAIGIIGCLLIPFLPVIVGKD VGIPNIQLLYLLFLANSVFSYFFTYNRSLLNADQLGYLNVINTFAYLVVATVIQVFVLYT TGNYALYLLIQIICTVISNIDISLRVKKRYKHVFQYQEIKKLDRETIKILKQNTIGNLSN KIGSVVVLSTDNILISIFVNLAAVGRYSNYVLIVNSIKGIFNQFTNSITASIGSVAVSDD RENGREIFFRHYFINFILIYFATIVMFLSIQPFISWWVGSSYQLDNFIFTLIILNFVIGV FRNSAQVFIAAYGLAWIQRWKSVVESILNIVFSLIFLLIFDMGIAGVILATILSSLTSVS WYEPYVVLKYGIHDRFGKYLFVTLKYCIALGLGILATYPLFSLISATTLLSIILRSLAGI VIGAIVFVILFYRTAEFKFVISIFNSLITKLKKRH >gi|307679190|gb|GL457057.1| GENE 224 209580 - 210470 686 296 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|315143374|gb|EFT87390.1| ## NR: gi|315143374|gb|EFT87390.1| hypothetical protein HMPREF9495_02874 [Enterococcus faecalis TX2141] # 1 296 1 296 296 540 100.0 1e-152 MKKTIGTILTVITVSILLSGCSKAKYPIIHFTQKEFVADGNGVVEIKGQFLNGEPGTLEA NINRKAGKVKVDKDQNFHIRYQMDSIKDTDFYLGIKDEKNRIAVGTTKIDSSEVEAVQND FEVIRTSDIISYFNKYDIKFLDYNENNVAELSGLTSSVVFNVGTRMDGTSIKEGVYLFED PESWNKANLSILDWWNKKVSNSLNKNYNDLDKDSSVNFLYEPNFIDSAEEKMIKQIDFFD NNRFLWTYRDKEKFLILVSDPELTSIERGKSMLAIQSLLIDKTFSLDKDEEDSERG >gi|307679190|gb|GL457057.1| GENE 225 210467 - 211927 568 486 aa, chain - ## HITS:1 COG:no KEGG:SPCG_1353 NR:ns ## KEGG: SPCG_1353 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae_CGSP14 # Pathway: not_defined # 61 446 59 445 477 214 35.0 9e-54 MKKKLKLDIYTITQTICIIVSIILFFYGKAKMLYNWQLFGVMFFWTGNLVYSFKNFGQKS VFFFFNITIFVFLLSRPFISFFRNRIWWHWGYSGSNFAMNVLYLTLIGILIGAMLFQRFG LKDFDSKLEKQKYPTYRIYLMKFSLVFYFITLIVSVYGDMEKLIFVRSTSYEEFYASFSS NLPTYVQVLGLMMPYVVCIYLACMPKKGISYVVLGSYVISSFPTFLMGQRGPLILKIIFA LLYFIIRDYLQDSQKWISKFEKIVIILATPLMIVLMGAFNYIRANSSIETNGFFSLIVDF FFKQGTSFDTIIFGHDFLDKLPFIDVKNYTFGSFIDSFKYGFIGQKLFNGIGLPSTNSPE KGMISNSLAHNLAYVYRKDEYLAGNGNGSSYLLEIFADYGYIGVFIASILLGIILIFLVV SFKRNNLLLSTIALICISNILFIPRSDATSWLQFIMKPTFIAPMIICFGSSFLLAKLERL RKVSRK >gi|307679190|gb|GL457057.1| GENE 226 211955 - 212932 887 325 aa, chain - ## HITS:1 COG:SP1365 KEGG:ns NR:ns ## COG: SP1365 COG0463 # Protein_GI_number: 15901219 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Streptococcus pneumoniae TIGR4 # 4 303 6 306 328 226 41.0 6e-59 MPKISIIVPVYNVEKYLEKCVRSILAQTFTDFELILVDDGSPDSSGAMCDQFAKQDERVK VIHKENGGLSDARNAGIEIATGEYLGFIDSDDYIADDMYELLYTNIVKEDADLSICGIYD VYEGKEPVEKQQQYIVLDKVAAMKMILEAKVVSVHAVNKLYKKEIFEDIRYPVGMITEDG AVILSILEHTEKIVIDTQQKYYYFHRANSISTNLFSKKDLDTINVWKENEKYILDRYPEL SNVVHTRVCWANFIVLDKMVTSQLTEEEKIIQKEVISFLRKNFLFIMKNKYFTKARKIAM CALQFSKCAYSCFPKLQEANNKKNS >gi|307679190|gb|GL457057.1| GENE 227 212934 - 213992 1010 352 aa, chain - ## HITS:1 COG:SMb20239 KEGG:ns NR:ns ## COG: SMb20239 COG0451 # Protein_GI_number: 16263977 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Sinorhizobium meliloti # 28 350 11 320 346 132 29.0 7e-31 MLFTDDNYLSDVERVLEKTPDWTKVTNKSVFITGASGMIGTFLIDVLMYQNKTRNANISI WAMGRTLSRLEERFTSYLEDPLFHIVIGDVIEEIQVAEACDYVLHCASNTHPKSYASDPI GTIMTNIAGTQHILDYAVKANSEKVLFLSTVEIYGENRGDLDKFTEDYCGYIDCNTLRAG YPEGKRASESLCQAYIQKYGIDVVIPRISRTFGPTMLLSDSKASSQFIMNAVHKENIVLK SAGTQLYSYAYVADIVSALLFLLVKGQKGEAYNVSNEHCDITLRTFAETLANVAGTKVIH GEATAQEKQGFSKATKALLDNQKIYALGWRPLYDSMEEPLKHTIKILESSGN >gi|307679190|gb|GL457057.1| GENE 228 214005 - 214709 209 234 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764767|ref|ZP_02171821.1| ribosomal protein L15 [Bacillus selenitireducens MLS10] # 4 234 6 228 234 85 27 2e-15 MITALIIAGGVGKRMGQEIPKQFIMVEEKPIIIYTLESFQKHPLIDRILVVCKKGWEQTL DAYAKEYHIDKLQWIIPGGNSGQESINNGVNFLKEHSNPEDTIVIHDGIRPLVDELVLSD VIVKCQEYGNAVTSLPYNEQIFVKETEETTRQYINRETLRRVSTPQAYKFEKLTWAYEKA FRENIGISESSYTNTMMVDLGETLYFALGSDKNIKLTTQDDLQLFKGFLKMKEE Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:27:50 2011 Seq name: gi|307679189|gb|GL457058.1| Enterococcus faecalis TX2141 genomic scaffold Scfld291, whole genome shotgun sequence Length of sequence - 42900 bp Number of predicted genes - 46, with homology - 42 Number of transcription units - 27, operones - 13 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 1813 1630 ## EF3075 hypothetical protein + Term 1834 - 1890 14.5 + Prom 2006 - 2065 6.9 2 2 Op 1 . + CDS 2128 - 2262 117 ## gi|295114402|emb|CBL33039.1| hypothetical protein 3 2 Op 2 . + CDS 2308 - 6210 3170 ## EF3074 hypothetical protein + Term 6226 - 6276 18.1 - Term 6212 - 6263 18.3 4 3 Op 1 . - CDS 6329 - 6865 594 ## COG0681 Signal peptidase I 5 3 Op 2 . - CDS 6927 - 7487 168 ## PROTEIN SUPPORTED gi|163764517|ref|ZP_02171573.1| ribosomal protein L32 - Prom 7520 - 7579 8.1 - Term 7559 - 7592 2.1 6 4 Tu 1 . - CDS 7635 - 8246 1045 ## PROTEIN SUPPORTED gi|29377528|ref|NP_816682.1| 30S ribosomal protein S4 - Prom 8423 - 8482 11.1 7 5 Op 1 . + CDS 8570 - 9373 746 ## COG2116 Formate/nitrite family of transporters + Term 9386 - 9431 9.2 8 5 Op 2 . + CDS 9445 - 10098 635 ## COG4912 Predicted DNA alkylation repair enzyme 9 5 Op 3 . + CDS 10108 - 10884 687 ## COG0561 Predicted hydrolases of the HAD superfamily + Term 10891 - 10936 12.0 - Term 10874 - 10929 13.9 10 6 Tu 1 . - CDS 10931 - 11494 805 ## COG0242 N-formylmethionyl-tRNA deformylase - Prom 11524 - 11583 8.5 + Prom 11485 - 11544 5.8 11 7 Op 1 26/0.000 + CDS 11738 - 12043 511 ## PROTEIN SUPPORTED gi|227517326|ref|ZP_03947375.1| ribosomal protein S15 + Term 12051 - 12099 7.1 + Prom 12119 - 12178 3.1 12 7 Op 2 . + CDS 12230 - 14344 1689 ## PROTEIN SUPPORTED gi|62291006|ref|YP_222799.1| polynucleotide phosphorylase/polyadenylase + Term 14357 - 14406 6.4 + Prom 14436 - 14495 6.4 13 8 Op 1 19/0.000 + CDS 14526 - 15386 1110 ## COG1792 Cell shape-determining protein 14 8 Op 2 2/0.333 + CDS 15383 - 15892 525 ## COG2891 Cell shape-determining protein + Term 15915 - 15959 7.1 + Prom 15906 - 15965 10.3 15 9 Tu 1 . + CDS 16197 - 17642 1919 ## COG3883 Uncharacterized protein conserved in bacteria + Term 17663 - 17726 13.7 + Prom 17672 - 17731 8.2 16 10 Op 1 . + CDS 17820 - 18389 600 ## COG1309 Transcriptional regulator 17 10 Op 2 . + CDS 18430 - 18900 606 ## COG0394 Protein-tyrosine-phosphatase 18 10 Op 3 . + CDS 18989 - 19219 334 ## EF3057 hypothetical protein + Term 19229 - 19272 3.2 - Term 19210 - 19266 12.0 19 11 Tu 1 . - CDS 19267 - 20001 731 ## COG3764 Sortase (surface protein transpeptidase) - Prom 20115 - 20174 7.2 + Prom 20099 - 20158 7.3 20 12 Tu 1 . + CDS 20235 - 21020 748 ## EF3055 hypothetical protein + Term 21021 - 21068 6.1 + Prom 21041 - 21100 6.4 21 13 Op 1 . + CDS 21124 - 21750 730 ## COG3212 Predicted membrane protein + Prom 21812 - 21871 5.4 22 13 Op 2 . + CDS 21913 - 22488 600 ## COG3859 Predicted membrane protein + Term 22543 - 22592 10.5 - Term 22520 - 22591 16.6 23 14 Tu 1 . - CDS 22608 - 22970 434 ## EF3052 hypothetical protein - Prom 23020 - 23079 8.1 + Prom 23077 - 23136 5.5 24 15 Op 1 . + CDS 23196 - 23963 756 ## EF3051 hypothetical protein + Term 23975 - 24022 3.2 25 15 Op 2 . + CDS 24040 - 24591 441 ## PROTEIN SUPPORTED gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) + Term 24610 - 24657 10.1 - Term 24598 - 24645 10.1 26 16 Tu 1 . - CDS 24661 - 25413 573 ## COG1737 Transcriptional regulators - Prom 25469 - 25528 10.4 + Prom 25480 - 25539 2.8 27 17 Op 1 . + CDS 25585 - 26373 892 ## COG3394 Uncharacterized protein conserved in bacteria + Term 26390 - 26447 13.0 28 17 Op 2 . + CDS 26460 - 27554 731 ## EF3047 hypothetical protein + Prom 27578 - 27637 1.8 29 18 Op 1 9/0.000 + CDS 27701 - 28138 572 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 30 18 Op 2 . + CDS 28165 - 28641 606 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 31 18 Op 3 . + CDS 28687 - 29838 1292 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase 32 18 Op 4 13/0.000 + CDS 29863 - 30636 929 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 33 18 Op 5 . + CDS 30626 - 31444 929 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID + Term 31449 - 31500 14.1 - Term 31432 - 31493 16.7 34 19 Tu 1 . - CDS 31511 - 33166 1670 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 33258 - 33317 7.6 35 20 Op 1 . - CDS 33369 - 33479 65 ## 36 20 Op 2 . - CDS 33485 - 33826 500 ## COG5584 Predicted small secreted protein - Prom 33878 - 33937 8.6 + Prom 33958 - 34017 5.6 37 21 Op 1 1/0.333 + CDS 34133 - 35209 1209 ## COG1363 Cellulase M and related proteins 38 21 Op 2 . + CDS 35221 - 35535 490 ## COG0526 Thiol-disulfide isomerase and thioredoxins + Term 35615 - 35658 -0.9 39 22 Tu 1 . + CDS 35683 - 36138 694 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins + Term 36177 - 36219 -1.0 + Prom 36170 - 36229 4.3 40 23 Tu 1 . + CDS 36349 - 36969 870 ## COG0073 EMAP domain + Term 37127 - 37161 1.5 41 24 Tu 1 . - CDS 37005 - 38303 1576 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - Prom 38339 - 38398 8.6 + Prom 38616 - 38675 4.2 42 25 Tu 1 . + CDS 38704 - 39183 552 ## COG1576 Uncharacterized conserved protein + Prom 39278 - 39337 8.4 43 26 Tu 1 . + CDS 39361 - 39450 93 ## + Prom 39528 - 39587 5.1 44 27 Op 1 . + CDS 39608 - 39697 151 ## 45 27 Op 2 . + CDS 39690 - 39773 77 ## 46 27 Op 3 . + CDS 39766 - 42898 3428 ## EF3023 polysaccharide lyase family protein 8 Predicted protein(s) >gi|307679189|gb|GL457058.1| GENE 1 2 - 1813 1630 603 aa, chain + ## HITS:1 COG:no KEGG:EF3075 NR:ns ## KEGG: EF3075 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 201 603 1024 1426 1426 631 95.0 1e-179 NVVYEEIKVFDFPALTYQFGFVDESGKRVDASTIKLTYDNWHGEGLATNSADSNKPDYWK TVSLEKGKVAPTKNNLKEIAYPAQSLEILSDRSTQYSAANLTFTLPNYYEKISVYNKSGT FDIAYPFPNIQGNDYSEPFVEGENKLLSRNFELKNNGSQSFIFNRTTTATPIDIQVPSYL RKVVHNPNLGSGVATYLTIDKPVYYYLTNRKVTENFVDTNGTKITPPTGFTQGNQIPMTS NTFKYTSAKALPASYTTGGKTYIFQGWYKGKTKPNTLTTSTTPTYNTTFDGNDDMTAMYK EEVPKASVALTRTTAETVTSGGNVTWRATITNTSQAPLTTATIKKSTAWTTGLAAPTAMI VTPAGGTAKTVPVTATTWTNGVSLGTDIPVGKSATVQFTTKATGTAGQVLRAGITTSGNY SGVSTSATVRVKDNDQAIVTPTAEGFISVPTFNFGQVGVAGSTQQHGLKKAADYYGNGTR NPYLRIKKTQPNWSLTAHLSQPKSATDSLPTATRLLLGAAPVSSFSNYNQPTELKNAVGT TSAISLNANNTATRIIANQQFTGSNIYQLDFTFNNVKLEVPANQGVKGQQYQAAITWNLV TGP >gi|307679189|gb|GL457058.1| GENE 2 2128 - 2262 117 44 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|295114402|emb|CBL33039.1| ## NR: gi|295114402|emb|CBL33039.1| hypothetical protein [Enterococcus sp. 7L76] hypothetical protein HMPREF9495_02880 [Enterococcus faecalis TX2141] # 1 44 1 44 44 83 100.0 4e-15 MNQKWQKLLPTGTHLRGGSAQAITTDPCALYEGTRGKQILAFPA >gi|307679189|gb|GL457058.1| GENE 3 2308 - 6210 3170 1300 aa, chain + ## HITS:1 COG:no KEGG:EF3074 NR:ns ## KEGG: EF3074 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 1300 1 1294 1294 2279 98.0 0 MKRINWQRLATIGLCSSLVINAFSGVTAIAETVTSESSPTVANSIKEATPASSTTQESTE SSQETTETSREKVTQETAKQAETKAPLETPEIKTNTTAQPAENSSENDRQTSISPRWVPN NQVIYPRITLAFTNESGQAFTDENLTLSGTYTKFGYENATSLWRSYAVNYPITSSNAEGG QYRVAVNATVPLPYDFFTDLPANYRMNIYAVEQLKIDNTLKYVDSIVAVPNSTLRMTRYS AQQTTELPQFGNHMTPFVLRTRDSVFSKSSENVFSLNTDGNEFLRILSVAPIGTPVEPVL YGFDGTATYRETLNYVVTRKQVTEKFVDANGVAITPPTGFTQNKKTPMTSNDFTFKQAST LPDTYQADGKTYKFKGWYKGKTKPNTLTTTKAPSYAVTYDGNDDLTVVYEAIQNPVTFQE GKGMSSVQVMNKAIQNPVTLPDRMYRVLFINETGGLTFADRYGFTGELVEVADGKVTPIG PVPTNNNSAVKEITIPGRAFDTERPTPLQYGVRNATFTLPKMYKTVTYQPGPNYTGTAYS IPETYRLSLRSGVKSDIDTTGWRIGLDPTTDPQKFTMSGIYWSSMPTNVRLATLLSATIT GKGVEPSVYTLDENARMYLYLENRRVTENFVDTNGTKITAPSGFAQGKKTVITSDSYTFK QSGDLPDTYKVGTKTYQFKGWYKGKNKPDTLTTTKAPSYPVTYNDDDDLTVVYEEVVMKT YNLPAKDVYFGYVDEAGNLLNTAGFSVEAELGESDETESTVLGKIQGTDEVMSKLKKLSI PGKSYDFPIEKLKTYGARSVNHTIPKQYKTMSITPLATYTGDKTKYPMSKEIRKNIEAPY TVVSQADGAEAFKLTDAGTFFRTRRAFWTWDPNNTLYAMGIYSGTVGKNYNLASPEGTIY YYLENRRVTENFVDPSGAKITPPTGFTQGKQTVIDSDNFTYASTKALPDTYTTGDKFYKF RGWYKGKTKPGTLTTTKTPSYAVTYDDKDDMTAVYEEVQPTAEMTVSRLLEVIPNEASMV WTVRLKNTSEVPLTNVKLAPTAKWAAGISVPTQLAVRIGNTPNKIIPVTAEQWQAGVNLD IEIPVNGEALVTVGTAKITGEPRQLLTAEMTASGNFSAVTASNFVRIQGEDQTITPTPVE EGFISTPTFDFGKITINSSTKQYGLKKAADYYGNGTRNPYLRIKTSQPNWQLTAQLSQLT ASADSLPTSTRLLLGSADVIAIENYNQVTELTNKVGVTKALTLTSDGTSTPVILNNQFTG NDVYQLDFDFANVKLEVPANQGKINEKYQGTVTWNLVTGP >gi|307679189|gb|GL457058.1| GENE 4 6329 - 6865 594 178 aa, chain - ## HITS:1 COG:lin1308 KEGG:ns NR:ns ## COG: lin1308 COG0681 # Protein_GI_number: 16800376 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Listeria innocua # 21 167 28 182 188 135 48.0 3e-32 MSSLLKRLVQLVLLVVAVLLIRHYVFSPAAVNGSSMEPTLHNNDRLWVTSIKKPQRFDII AFPSPRNGQRVAKRLIGLPGETVEYRDDTLYINGVSLSEDYLASAKRNVSKNENYTQDFT LETLEATQSLTVPEGMYFVLGDNRPRSDDSRYFGFVKQASVEGVLTFRYYPLDKIGFP >gi|307679189|gb|GL457058.1| GENE 5 6927 - 7487 168 186 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764517|ref|ZP_02171573.1| ribosomal protein L32 [Bacillus selenitireducens MLS10] # 4 179 1 175 190 69 29 4e-11 MRLLMNKASLRSLILAAEFAVIIAVLSQFTIPLGIVPLTGQTFAIGLTATVLGKRTGTYA ILIYFLLGLIGLPVYAGMSSGFGVLFGPTGGYLIGFIFNGLLTGYILEKTTFNYTWAIIA NIAGALVTLVFGMIWLKYSANLPWPNAFAGGFAPFIIPGIIKAVAAAYVGILIRQRFMKR FLAHLS >gi|307679189|gb|GL457058.1| GENE 6 7635 - 8246 1045 203 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29377528|ref|NP_816682.1| 30S ribosomal protein S4 [Enterococcus faecalis V583] # 1 203 1 203 203 407 100 1e-113 MSRYTGPSWKVSRRLGISLSGTGKELARRPYKPGQHGPNSRGKVSEYGMQLTEKQKLRHM YGMNERQFRTLFIKASKIKEGKHGVNFMVLLEQRLDNVVYRLGLATTRRQARQLVNHGHI TVDGKRVDIPSYHVEVGQVIGVREKSQNISTIKEAVEATVGRPAFVSFDTEKLEGSFTRL PERDELYPEIDEALVVEYYNQKL >gi|307679189|gb|GL457058.1| GENE 7 8570 - 9373 746 267 aa, chain + ## HITS:1 COG:lin0602 KEGG:ns NR:ns ## COG: lin0602 COG2116 # Protein_GI_number: 16799677 # Func_class: P Inorganic ion transport and metabolism # Function: Formate/nitrite family of transporters # Organism: Listeria innocua # 5 258 6 259 266 273 67.0 2e-73 MKSGSPLFEQIDKSIDKKVNLFSNSFSRYAVRAMLACLFLTLGTAVAFAIAIKGEGISHG LGKMLYAFMFSWSLVMILYMNAELGTSNMLYMTVGVYRKKVNFSLAAKILFTCILFNLIG GVLFGFLVSLTVPFQDLPKDSFFFTSIAGKLEKTTLQILVEAMFANIVVNTAVLVSMRMK DDAGKVAAIIFIIFIFAFLGFEHVIANFPAFSLAYFASNGAIEAFTAGNVVHNLFWAFIG NFIGGGLIMGLGYAWLDKDNKNLTYFD >gi|307679189|gb|GL457058.1| GENE 8 9445 - 10098 635 217 aa, chain + ## HITS:1 COG:Cgl0917 KEGG:ns NR:ns ## COG: Cgl0917 COG4912 # Protein_GI_number: 19552167 # Func_class: L Replication, recombination and repair # Function: Predicted DNA alkylation repair enzyme # Organism: Corynebacterium glutamicum # 9 210 19 206 208 119 37.0 4e-27 MDTLQFQKNPETAAKMSAYMKHQFVFVGIPAPERQALSKQLLKESHTWPKEKLCQEIEAY YQKTEREYQYIAIDLALQNVRRFSLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLT ELPTIFALFYGAENFWNRRVALNLQLMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSL RQYSKTNPQWVEELMKELVLSPLAQREGSKYLAKASE >gi|307679189|gb|GL457058.1| GENE 9 10108 - 10884 687 258 aa, chain + ## HITS:1 COG:lin1028 KEGG:ns NR:ns ## COG: lin1028 COG0561 # Protein_GI_number: 16800097 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 4 258 3 256 256 178 37.0 1e-44 MERKLFAFDIDGTLLNSEKKALDSTREALAKLREQGHLVTLATGRSRYMAQEVIWDLDFT NYVLCNGAAAFVDHEQYYQNLLHAEALERLAQDSDQRGLGFACVGLDDIKKSNQHRAEKM EIAMNSFHFHSPAYDEHFYRQNDIYQALAFYDAEDQCTFEEEYPEFRFIRWHQHSVDVVP KDGSKSATLTYLAKRVGIDAKNIIAFGDGENDREMLSHAGIGVAMGNASPSIQKVATMVT DTNDNDGIWKALKEMKAI >gi|307679189|gb|GL457058.1| GENE 10 10931 - 11494 805 187 aa, chain - ## HITS:1 COG:SP1456 KEGG:ns NR:ns ## COG: SP1456 COG0242 # Protein_GI_number: 15901306 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Streptococcus pneumoniae TIGR4 # 1 187 13 203 203 262 68.0 2e-70 MITMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVG LAAPQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRD VPGYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKENPFALK EGVLVIE >gi|307679189|gb|GL457058.1| GENE 11 11738 - 12043 511 101 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227517326|ref|ZP_03947375.1| ribosomal protein S15 [Enterococcus faecalis TX0104] # 1 101 1 101 101 201 99 6e-51 MIRRIIEKEVEQMAISQERKNEIIKEYARHEGDTGSPEVQIAVLTEDINQLNEHARTHKK DHHSYRGLMKKIGHRRNLLAYLRKTDIQRYRELIQRLGLRR >gi|307679189|gb|GL457058.1| GENE 12 12230 - 14344 1689 704 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|62291006|ref|YP_222799.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 1 str. 9-941] # 11 703 11 701 714 655 50 0.0 MTEKQVFKTTWGGRPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDVDFFPLTV NYEEKMYAVGKIPGGFIKREGRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVD QDCTPEMAAMFGSSLALAISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDIELTVAG TKEAINMVESGAKEVSEEDMLGALLFGFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDAD LKKEIFDAYYNTMKTAVMTEEKLAREVEIDKVKDTVKEVYAEKFAEHEEEAQLLKEVKQI AEDLEKDVVRELITIDKIRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTL APLGEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGRAGSPGRREIGHGALGERALAQIIP SEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVSDGENYT ILTDIQGLEDHLGDMDFKVAGTKDGITALQMDIKIQGITEQILTEALDQAKKARMEILEE LTTTIAAPREELSQYAPKIEMIQIKPAKIKDVIGKGGETINSIIDETGVKIDIDQDGNVS IASSDAEMIKKAIKIIEELTKEVEVGQVYLAKVVRIEKFGAFVNLIKGKDGLIHISQLAN ERVNNVEDVVKLGDEVLVKVTEIDKQGRVNVSRKALLNEENKEK >gi|307679189|gb|GL457058.1| GENE 13 14526 - 15386 1110 286 aa, chain + ## HITS:1 COG:L98749 KEGG:ns NR:ns ## COG: L98749 COG1792 # Protein_GI_number: 15674213 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Lactococcus lactis # 44 279 44 285 291 165 40.0 1e-40 MKKFNPNKNIIITLILVIILVTIISLTAAQRSEKGKTNVVQGGVNNSVSMVDRVISFPAR VVENGLSSMGNLINTFKENERLKEKIDSYNELAVQNNNYKREIDSLKQELNLNETLANYE KVTANVITRSPDTWQDLLIIDKGTNDGIEAGMAVMAQKGLVGRVIEVNATTAKVELLTSK NVNSNHFPVRVTSANGESFGLLKNYDNKTNALIVSQLTGDATLKEGDVVQTSGLGGNSPA DLAVGTVIKVKPDSFGLDREVYVKPYADVYGISVVTVVKRSAGESE >gi|307679189|gb|GL457058.1| GENE 14 15383 - 15892 525 169 aa, chain + ## HITS:1 COG:L98132 KEGG:ns NR:ns ## COG: L98132 COG2891 # Protein_GI_number: 15674212 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Lactococcus lactis # 7 169 6 168 175 82 35.0 4e-16 MIRKEYLKYVTPILLFFLMLIDAHLTKSFETWTSNVYFASSHLLLLAFMFAVPNFSKRYL LITSLILGFICDSYYIGIIGIYTVALTLSVMLMYTFKEVIQTNLLTGFFGIVIFTTLYEL IAVLIQVAFHLADVSPILFITRVLGPTLLLNMVWYVILSYPLKKLFSVK >gi|307679189|gb|GL457058.1| GENE 15 16197 - 17642 1919 481 aa, chain + ## HITS:1 COG:SP2216_1 KEGG:ns NR:ns ## COG: SP2216_1 COG3883 # Protein_GI_number: 15902020 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 268 1 269 270 94 32.0 5e-19 MKKSVLSALMVCSITLTSVALPSAAFADEYDTKIQQQDQKINALTSQMSDAEAKVAAIEN DMVETAKQIDTLTAKKNKLSSEVSKLYSEISDLNVRIQKREVQMTKQARDVQVNGQSDSI IDAVLDADSVADAIGRVQAVSTMMSANNELLEQQKEDKATVEKKTKNVEKQIAELEAATK ELNDKTESLKTLKIQQEVAKNDLEAQRSEEQGKKDGFIKQKKEAEKRLAEEQARQRAAAK KAEEQAAAQAQAAAQKAAAEQAQATKAANEAAASAAEEKAGTPVVESSTTTESTTTQETT TSSTETESVVTTPAAAPEKEKEVPVTNPTTPEKGNEAKPGNGGVTSGKQAAINAALADVG NSYATGWNQPGECLVSVRRWLAAGGINFGYGGPNSGYVASGATQVSWSNVQPGDVVQYES AYSPDSWIGGVHTVLVTGVSGGSVQIVEANNPGGSGYVSSNSNWSPAPPAGFRAVVWRFP G >gi|307679189|gb|GL457058.1| GENE 16 17820 - 18389 600 189 aa, chain + ## HITS:1 COG:lin0482 KEGG:ns NR:ns ## COG: lin0482 COG1309 # Protein_GI_number: 16799557 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 7 185 7 185 186 196 54.0 2e-50 MSGTHDTKQAIASALIELCEQKDFRKISVQDITKKVGLNRQTFYYHFTDKYDLLRWIYRH DALIYLETDICLENWEEQALKLLKAIKEKSHFYYTTVTSDSEVLLNVFSASTNRLFISLF EQVDVENHLTDKDKQFYANFFSYGCSGVLTKWILEEYPQTPLEMATQLFRLAKDTEFMAY HLYEQEANE >gi|307679189|gb|GL457058.1| GENE 17 18430 - 18900 606 156 aa, chain + ## HITS:1 COG:lin0937 KEGG:ns NR:ns ## COG: lin0937 COG0394 # Protein_GI_number: 16800007 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Listeria innocua # 1 150 1 149 152 172 52.0 3e-43 MVTVLFVCLGNICRSPMAEAIFRQKVQQAGLESTIQVFSAATSHWEVGSQPHKGTRKILE QQGISYQGMRATQIQPSDFKKYDYIIGMDTNNVADLKALAPQEEQPRIHLFMEVVAGKET MDVPDPYYTGDFEETYRLVEAGTSEWLKKIKAQLKD >gi|307679189|gb|GL457058.1| GENE 18 18989 - 19219 334 76 aa, chain + ## HITS:1 COG:no KEGG:EF3057 NR:ns ## KEGG: EF3057 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 76 16 91 91 109 98.0 3e-23 MNSSYLSYVFELSLYYLLLIMSLPLVYAVTYHLSFSSMYTSEWLMISVFLSPLVLLFAGI RYGFARLKQQERQVMK >gi|307679189|gb|GL457058.1| GENE 19 19267 - 20001 731 244 aa, chain - ## HITS:1 COG:L125196 KEGG:ns NR:ns ## COG: L125196 COG3764 # Protein_GI_number: 15673095 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Lactococcus lactis # 4 242 44 287 287 216 45.0 2e-56 MRPKEKKRGKNWLINSLLVLLFIIGLALIFNNQIRSWVVQQNSRSYAVSKLKPADVKKNM ARETTFDFDSVESLSTEAVMKAQFENKNLPVIGAIAIPSVEINLPIFKGLSNVALLTGAG TMKEDQVMGKNNYALASHRTEDGVSLFSPLERTKKDELIYITDLSTVYTYKITSVEKIEP TRVELIDDVPGQNMITLITCGDLQATTRIAVQGTLAATTPIKDANDDMLKAFQLEQKTLA DWVA >gi|307679189|gb|GL457058.1| GENE 20 20235 - 21020 748 261 aa, chain + ## HITS:1 COG:no KEGG:EF3055 NR:ns ## KEGG: EF3055 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 261 1 261 261 499 100.0 1e-140 MLDLIYVHIDVTSNAVLSKGITHSDFVRSIVHHPQNLLLLDPSAEAGEYDMHSGLKIIRG EESVNRYFQSLQRRWMTEEIKWIDFSDVTMLKELTPLEISELLYFGHMKNSLHSPFFYKL QNDFVFFEFADQMTRVYYRYIDEFYRIFADKITRVVLEKVNQKKAFFKRNTPVEKLSPEL LKNMKGILQEGVIFCFQQTEVDKEEYRIPIYLVEDSLSKMKNTSYQKEEILATLVYNSEK RIWHIEQENDFGEIFMLAHEG >gi|307679189|gb|GL457058.1| GENE 21 21124 - 21750 730 208 aa, chain + ## HITS:1 COG:lin0040 KEGG:ns NR:ns ## COG: lin0040 COG3212 # Protein_GI_number: 16799119 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 64 208 60 203 203 89 37.0 4e-18 MKKILYGSMTGLALFLVAGCTPKTPTAVSSTNEQKETAISTSETSSSVQQEATTTSEKTS AVAVSLEKVTTAFEKKYPEAKITSLQLDTDFGRYFYEIEGVDQQKEYQVEVNAETGEFTK EKVETLDADEQNGVKMQEEALDLTNIISREQATTLAEKEAKVGQATDWKLEKELGITYWE VKVKEGQQKIEVKIDAHSGKILTTERDD >gi|307679189|gb|GL457058.1| GENE 22 21913 - 22488 600 191 aa, chain + ## HITS:1 COG:SPy0600 KEGG:ns NR:ns ## COG: SPy0600 COG3859 # Protein_GI_number: 15674683 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 1 190 1 186 187 116 38.0 2e-26 MARKMDLRIWVEGTVVAAMAMALSFLPIEFANSGLDLSLGMVPLVLYSFRRGLLPGVAAG FVWGMLNIILGTAMKNFLSVPQIIFEYPFAFAFGGMGGVFARKIQLYFQANRLKSAIRTI ILGSVVAVFARWFWHFWAGVLVWGMYAPEGMSPYLYSFVLNGTSTVVNCLYVSLVLGLLA KVAPQLFVPKK >gi|307679189|gb|GL457058.1| GENE 23 22608 - 22970 434 120 aa, chain - ## HITS:1 COG:no KEGG:EF3052 NR:ns ## KEGG: EF3052 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 120 1 120 120 180 100.0 2e-44 MDQHKATIKSISKLITLSSQHFFSAFLEDSQDQKNKEKERSALLQELQVAAAQKSLVVLQ LKEVPTAHKFETVIGWIVSKNISDNIVVRLQTDEQQLRMIPVASVMKVSTLANRHQRQIH >gi|307679189|gb|GL457058.1| GENE 24 23196 - 23963 756 255 aa, chain + ## HITS:1 COG:no KEGG:EF3051 NR:ns ## KEGG: EF3051 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 255 1 255 255 511 100.0 1e-143 MSKKPSGYQKKVLTVLLVSFGFGGLLAQFSPMKSGGFSSWFDDSYVKASAESSKTKEPAP VKIEKKVKPLSYGQQVNQEIEKKQYDGHLDLPLELQTDAKWKDTAYGFGNVDKPNTIEIN GCAIVSLAMVGSYMDHQEVTPLDVLAWAKNDFFMEGQGTAWSIFSAYAEMKGYNCQEIGD IETVAAFLKEGHPVIISVKPGYFTTTGHIMVMSGVDEKGDFWINDPNDSEEKGHSKRTFT AEEVMNEALNFWAFY >gi|307679189|gb|GL457058.1| GENE 25 24040 - 24591 441 183 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) [Campylobacter concisus 13826] # 1 180 1 179 185 174 46 8e-43 MERCTWATDTTEEMQAYHDDEWGRPVHEEQQLFELLTLESMQAGLSWAIILNKRETLRAA YDAFDYRKIARYDEEKILALLANPGVIRHRLKIQATITNAQVFQEIQAEFGSFDRYLWNF IDQQPIVNHWQHPEEVPASTELSQQISRALKKRGFKFLGATTVYSFLQAAGLVNDHLETC QYK >gi|307679189|gb|GL457058.1| GENE 26 24661 - 25413 573 250 aa, chain - ## HITS:1 COG:lin0527 KEGG:ns NR:ns ## COG: lin0527 COG1737 # Protein_GI_number: 16799602 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 248 1 247 250 205 45.0 5e-53 MLFLTYDPQLNPTELEIYKYISHNIEKVPYMTIRELADEIHFSKTAIWRFCQKFECEGYT DFKFKLKNYLSERKKTAQPKSLDETMLIHFLQRSSEELLEGRIVQAAELLAKKEFVLFIG EGTSKVLAEFGEIYFSSIYNLSASVSHLFSHPVSKLSEETAKKVGVIALSVSGETQKVRQ NIDYFIEMGIDVIAITNSEKSTIAQLSTVTIPYYITTEKSSIADVTSQLPALFLIEKLAK TVSTMLNECP >gi|307679189|gb|GL457058.1| GENE 27 25585 - 26373 892 262 aa, chain + ## HITS:1 COG:chbG KEGG:ns NR:ns ## COG: chbG COG3394 # Protein_GI_number: 16129687 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 6 260 5 249 249 143 37.0 3e-34 MSNKKLIINADDFGYTPAVTQGIIEAHKRGVVTSTTALPTSPYFLEAMESARISAPTLAI GVHLTLTLNQAKPILPREMVTSLVDEAGYFWHQSIFEEKVNLEEVYNEWDAQIISFMKSG RRPDHIDSHHNVHGKNEKLLGVALALARKYQLPLRNASRSIETKDYLELYQDVRTPDEML YQFYDKAISTETILQLLDMVVCSEGEVFEINCHPAFIDTILQKQSGYCMPRIREVEILTS QEVKEAIEERGILLANYESLAM >gi|307679189|gb|GL457058.1| GENE 28 26460 - 27554 731 364 aa, chain + ## HITS:1 COG:no KEGG:EF3047 NR:ns ## KEGG: EF3047 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 364 1 364 364 600 97.0 1e-170 MSKEQPINLNISDFLKVFAVASVILQTVLSYVLTHSPQTEAMNSIGSFYRMSKYSAPMFI FAIIYNMVLKSQAESYLEFLKEKFYELVLPYVVWSSLYLYAFPSLQQRMPYETPLGFLGK VLSGDGAAHLWYAVMMLQFQLFMPYFIWLATRITKNKKVILPIVFFTIGAHILWCFWYQK MIFPYAETSLWYLIDRSGLSYLIYGIFGVIAAKYQGAIFTFLKKTRVALFLLFLFIFWQA VQGNLFDGTQMTPNDLPYLELLQSAYSLLIIGLVFYLGTQGIAKKIRLLPMVKWIATYAY RSYLANVFVFQLVLKLVHPFLTNQPVSLVILVLYMGTFVGSFGLTVVIEHFFKSIFKLGR LVSV >gi|307679189|gb|GL457058.1| GENE 29 27701 - 28138 572 145 aa, chain + ## HITS:1 COG:ECs4014 KEGG:ns NR:ns ## COG: ECs4014 COG2893 # Protein_GI_number: 15833268 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Escherichia coli O157:H7 # 1 100 1 99 144 79 42.0 2e-15 MIGLILTGHGVFSTGMHQSVSMIAGEQPNIQAVPFFNDTGLDVLESNIRKAVDSMLETCP AVVILTDLLGGTPFRISMTVASNYQNVEVLAGTNLPMVLEGFALRTISTNVEDFVSMVTD SARDGIVHKKLEQPQANTQEEADGI >gi|307679189|gb|GL457058.1| GENE 30 28165 - 28641 606 158 aa, chain + ## HITS:1 COG:agaV KEGG:ns NR:ns ## COG: agaV COG3444 # Protein_GI_number: 16131025 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Escherichia coli K12 # 1 157 13 169 169 157 48.0 9e-39 MPNILLTRIDNRLIHGQVATQWNGSLGANLILVANDAISEDTMRQQLLNMAAPAEVQTRF FSIKKTIEVIHKASERQKIFLLVDNPVDALRLVDGGVPIEKLNIGNMHMEEGKKQVATAV AVNKTDVDAFKKLQELGVKLSIQRVPSTPEESLDALFS >gi|307679189|gb|GL457058.1| GENE 31 28687 - 29838 1292 383 aa, chain + ## HITS:1 COG:L173068 KEGG:ns NR:ns ## COG: L173068 COG1820 # Protein_GI_number: 15673317 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Lactococcus lactis # 40 382 44 381 382 203 34.0 4e-52 MIIQSKNVWINEQFQPAQVEVSEQRIVAILPYNEKAVDKEYGEKRILPGFIDIHDHGWHG GDANHANHEFIKEWQAYLPEEGITAFLPTTSTTFPKDLEHSFEVIGSFIEEDQGTNGAQI LGIHAEGPMISEEFRGSHNPELLVKPSVETFKKWQELAKGHIKLMTLAPENDVENALTTY CHEHDVVISIGHTAATYEQAMAAVEAGAKSFTHTFNGMEDISHRKPTAVVAALDSEETFA EIIADGVHVDYSLVRVLAKLKGKDYLIAVTDSIWAKGCQPGVYPKPEKGIEMVIDEQNVV RLANGKLAGSTNHLNNMVRNLVEKALLPEVIAINSVTKNPARLLNVNESMGEIKLGLLGN FTIIDEKYEVLETLVNGETVYKK >gi|307679189|gb|GL457058.1| GENE 32 29863 - 30636 929 257 aa, chain + ## HITS:1 COG:ECs4012 KEGG:ns NR:ns ## COG: ECs4012 COG3715 # Protein_GI_number: 15833266 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Escherichia coli O157:H7 # 2 218 5 221 259 213 54.0 4e-55 MLVQAILVGIWAGIAGVDKLVLQTHIHRPIVTGLIVGLILGDVNTGLITGATLELVWIGA VAIGGAQPPNVVIGGVIGTALAIITKSDPQVTVGLAVPFAVAAQALITLLYTAMSPIMHK FDAYAKKADTRGIERMSSFLPIVLFICYFFVVFLCIFFGADKASSFISILPEWSIHGLSV AGGMMPAVGFAMLLKTMWETSYVPFFIFGFVMAAYLGLDTLAVAGLAVAIALYEFYAQRN NTVTASNNNGGFEEDGI >gi|307679189|gb|GL457058.1| GENE 33 30626 - 31444 929 272 aa, chain + ## HITS:1 COG:ECs4013 KEGG:ns NR:ns ## COG: ECs4013 COG3716 # Protein_GI_number: 15833267 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Escherichia coli O157:H7 # 3 268 23 288 292 258 47.0 1e-68 MASEETYNDTISEKVITKKELKKIMFRSYLLQSSFNYERMQAGGWTYSLIPGLKKIHRDK EDLALSLENHLQFMNTNPQLVTFMHGVIIAMEESKESPKSIQAIKTALMGPLGGIGDALF YLTVLPIAAAIGSQLSLEGNILGPIVFLLLFNIPYMAAKIGLINLGYKMGVKAISVLSES TKKLSRSATIVGISVVGALIPKSVQLTTTFVFRLKDTKLDLQTQLFDTIMPNLLPLVFTL FCFIMLKKGRTPIALIIFTVIFGLLGSLIGII >gi|307679189|gb|GL457058.1| GENE 34 31511 - 33166 1670 551 aa, chain - ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 20 549 22 556 559 410 41.0 1e-114 MKKSVLFTSLLVLSSLALAACGGGSDDKGASNGGSNNQVYTMVESQEMPSADPSLATDEV SFTTLNNVYEGIYRLDKDNKPAPAGAAEKATVSEDGLVYKVKLREESKWSDGKPVTAADY VYGWQRTVDPATASEYAYMFEPVKNAEKISKGELPKEELGIKAINDHELEITLETATPYF DDLLAFPSFLPQRQDIVERFGKDYTKSSDKAVYNGPFTLTEFDGPGTDTKWSLTKNEEYW DKETVKLDKVAINVVKEAPTALNLYETGEVDDTYLSGELAQQMQNSPDLVQLKAASSFYL EMNQADEKSPLTNANLRRAMSYAIDRDSLAKNILANGSLPSQGFVPVDVAKSPKTGEDFV KEAGSDKLVKYDKKKAVEYWNKAKQELGVSNLTVDLMVDDSEGAKKMGEYLQGSLSDTLE GLKVTVTPVPMAVRLDRTLKGDFQIAVRGWSADYSDPINFLDLLESSTSNNRGRYSNPEY DKFIAASKTTDVNDPEKRWEDLINAEKTVIADMGVVPIYQKAESHLRAPNVKEIIYHPTG AKYDFKWAYKE >gi|307679189|gb|GL457058.1| GENE 35 33369 - 33479 65 36 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLQKHLFAFVTIFFSSHLFFVKGMFILCQKNQINDE >gi|307679189|gb|GL457058.1| GENE 36 33485 - 33826 500 113 aa, chain - ## HITS:1 COG:lin1653 KEGG:ns NR:ns ## COG: lin1653 COG5584 # Protein_GI_number: 16800721 # Func_class: S Function unknown # Function: Predicted small secreted protein # Organism: Listeria innocua # 30 108 19 100 103 85 54.0 2e-17 MNEENELTYFKGGLALGVGLGLVGGIASTLFYHKKKTISADLVLENVKAAFLKEGPIEGS WIEFEKKPLRKFAIHSKTYTGGICRIEDDGIVQYEFTADAYTGTVIDIQRLKD >gi|307679189|gb|GL457058.1| GENE 37 34133 - 35209 1209 358 aa, chain + ## HITS:1 COG:SPy0115 KEGG:ns NR:ns ## COG: SPy0115 COG1363 # Protein_GI_number: 15674335 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Streptococcus pyogenes M1 GAS # 6 354 5 352 355 416 56.0 1e-116 MEEKTFQRIKELTELQGTSGFEDDIRAYMKEHITPLVDDVQYDGLGGIFGIKRSKVEAAP RVMVAAHMDEVGFMLTQINDNGLFQVVPLGGWNPYVVSAQRFTLKTSKGNYPCISSSIPP HLLRGTSGQKQLEVSDVLFDAGFSSKEEAKSFGVRPGDSIVPQTETIKTANGKNIISKSW DNRYGCTLVLDALETLQNEELGHTLIAGANVQEEVGLRGSKPSVHKFNPDIFFAVDCSAA DDIHTKKGTYGHLGEGTLLRIFDPGLITLPRLREYLLDTAATHNIPYQYFVSKGGTDAGA AHTTNNGVPSTVIGVCGRYIHTHQTMFSIADYEAAREMLLQALRGLDKSTVNTIVYGK >gi|307679189|gb|GL457058.1| GENE 38 35221 - 35535 490 104 aa, chain + ## HITS:1 COG:SP1911 KEGG:ns NR:ns ## COG: SP1911 COG0526 # Protein_GI_number: 15901736 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Streptococcus pneumoniae TIGR4 # 1 103 1 104 105 134 59.0 3e-32 MIYPNSLEELATYVEKGKNVFFFTADWCGDCRFIKPVMPEIEEAFPAFQFIEVDRDQFID VAAEWNIFGIPSFVVIENGQELGRLVNKDRKTKEEISAFLTSLG >gi|307679189|gb|GL457058.1| GENE 39 35683 - 36138 694 151 aa, chain + ## HITS:1 COG:SA1532 KEGG:ns NR:ns ## COG: SA1532 COG0589 # Protein_GI_number: 15927287 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Staphylococcus aureus N315 # 6 150 4 146 166 125 44.0 2e-29 MEEQMYKNILVGVDGSDQANLAYERAIEVARRNGSRVIVANILENQVYTMMGYSTLNDQL IDQETAAAEELMADCKKYAESVDFHNVETVTMFGSPKEVMSHELPEKYNVDLIMVGQSGL NAVERVVMGSVSSYIIRQAPCDVLIVHSEEK >gi|307679189|gb|GL457058.1| GENE 40 36349 - 36969 870 206 aa, chain + ## HITS:1 COG:SP1910 KEGG:ns NR:ns ## COG: SP1910 COG0073 # Protein_GI_number: 15901735 # Func_class: R General function prediction only # Function: EMAP domain # Organism: Streptococcus pneumoniae TIGR4 # 1 202 1 200 208 205 54.0 4e-53 MIFAYNKEHVGDVLLVIVADDQGAENQVKRVGDVARVSLVEAPETVVAWNIFNASALLGD INGTGQVTLTDEQIEKVNTAIKDAGFSETLEKDDTPKIVVGFVKSCKKHPDSDHLSITQT EVDNGEILQIVCGAPNIKAGQKVVVAKPGAMMPDGLMIWPGVLRGEESFGMICSAKELRL PNAPAKKGILELPFDAEVGSAFAVGE >gi|307679189|gb|GL457058.1| GENE 41 37005 - 38303 1576 432 aa, chain - ## HITS:1 COG:SPy2216 KEGG:ns NR:ns ## COG: SPy2216 COG0265 # Protein_GI_number: 15675945 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Streptococcus pyogenes M1 GAS # 53 425 35 405 407 323 55.0 6e-88 MQRKDVTPNSDKKSLLQKFGIGLAGGLLGGALILGGAYSGIIPTPNGGNNAATTTSTNHG DTKVSNVSYNVSSDVTKAVKKVQNSVVSVINMQSASNNSSADDPFGGLFGGNEGTQDSSG NNGNDLEAASEGSGVIYKKDGKTAYVVTNNHVVDKAQGLEVVLSDGTKVKGELVGTDAYT DLAVIKISSDKVDQVAEFGNSSKITVGEPAIAIGSPLGSDYANSVTQGIISSVNRNITNK NESGETININAIQTDAAINPGNSGGPLINIQGQVIGINSVKIVQSTSQVSVEGMGFAIPS NDVVNIINQLEKDGKVTRPALGITMSDLTGISSQQQEQILKIPASVKTGVVVRGVEAATP AEKAGLEKYDVITKVDGQDVSSTTDLQSALYKKKVGDKMEVTYYRGSKEMKATIDLTIDK SALTQQNNRSNQ >gi|307679189|gb|GL457058.1| GENE 42 38704 - 39183 552 159 aa, chain + ## HITS:1 COG:lin0321 KEGG:ns NR:ns ## COG: lin0321 COG1576 # Protein_GI_number: 16799398 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 159 1 159 159 219 71.0 2e-57 MKIKLVTVGKLKEKYLIQGINEYLKRLNSYAKMEIIEVPDEKAPEKLSDAEMLQVKEKEG QRILGKINDNEYVFVLAINGKQLSSEEFSKEIEQLGISGKSNLTFVIGGSLGLSDSVLQR SNQQISFGRLTYPHQLMRLVLVEQIYRGFRIMKGEPYHK >gi|307679189|gb|GL457058.1| GENE 43 39361 - 39450 93 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVIPLVFSKKLSDCCASETGSAPIIIILK >gi|307679189|gb|GL457058.1| GENE 44 39608 - 39697 151 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKSLSEVITLGCLFMPNFYIEYLVEEEVD >gi|307679189|gb|GL457058.1| GENE 45 39690 - 39773 77 27 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIKLSEKSVWKSRIGCLKIERYGEKYD >gi|307679189|gb|GL457058.1| GENE 46 39766 - 42898 3428 1044 aa, chain + ## HITS:1 COG:no KEGG:EF3023 NR:ns ## KEGG: EF3023 # Name: not_defined # Def: polysaccharide lyase family protein 8 # Organism: E.faecalis # Pathway: not_defined # 1 1044 1 1044 1372 1991 99.0 0 MIKKIIVVVAFMLTGFSLTAMSASAEEITDLFLQKEVTYSGVEGGKIGENWKYPQFVGEK AVDGDETTRWSADKQDEQWLIVDLGEVKNIGELVLQLHAESPVYEILVSTDGESYQSIFK EENGQGGQPTKKYIDGNNVQARFVKYQQMKMWQHTNKQFYSSSIISFEAYEKKRLPEAIK LLTENLTISEKRKQQLAFEVSPAGVDITEDQIEWSSSDPTIVTVDQTGNLTAVKSGEAKV TVKIKGTEISDTIPVTVVAENKQYAEMRAKWKMRLLGTTQYDNDADVQQYRAQIATESLA LWQTLNQAADRGYLWERKPSDTVSADYTTQFTNIKKLALGYYEPSSELFEKPEVYDAIVK GIEFMIDTKKYNGTYYTGNWWDWQIGSAQPLTDTLILLHDDLLNTDAEKLNKFTAPLMLY AKDPNIQWPIYRATGANLTDISITVLGTGLLLEDNQRLVQVQEAVPSVLKSVSSGDGLYP DGSLIQHGYFPYNGSYGNELLKGFGRIQTILQGSDWEMNDPNISNLFNVVDKGYLQLMVN GKMPSMVSGRSISRAPETNPFTTEFESGKETIANLTLIAKFAPENLRNDIYTSIQTWLQQ SGSYYHFFKKPRDFEALIDLKNVVNSASPAQATPMQSLNVYGSMDRVLQKNNEYAVGISM YSQRVGNYEFGNTENKKGWHTADGMLYLYNQDFAQFDEGYWATIDPYRLPGTTVDTRELA NGAYTGKRSPQSWVGGSNNGQVASIGMFLDKSNEGMNLVAKKSWFLLDGQIINLGSGITG TTDASIETILDNRMIHPQEVKLNQGSDKDNSWISLSAANPLNNIGYVFPNSMNTLDVQIE ERSGRYGDINEYFVNYKTYTNTFAKISKNYGKTVENGTYEYLTVVGKTNEEIAALSKNKG YTVLENTANLQAIEAGNYVMMNTWNNDQEIAGLYAYDPMSVISEKIDNGAYRLTLANPLQ NNASVSIEFDKGILEVVAADPEISVDQNIITLNSAGLNGSSRSITVKTTPEVTKEALEKL IQEQKEHQEKDYTASSWKAYSEAL Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:29:11 2011 Seq name: gi|307679188|gb|GL457059.1| Enterococcus faecalis TX2141 genomic scaffold Scfld294, whole genome shotgun sequence Length of sequence - 2112 bp Number of predicted genes - 4, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 52 - 174 207 ## 2 1 Op 2 . + CDS 158 - 637 468 ## LM5578_2383 hypothetical protein 3 1 Op 3 . + CDS 649 - 1665 956 ## LSEI_1957 hypothetical protein 4 1 Op 4 . + CDS 1670 - 2111 176 ## Amet_2584 hypothetical protein Predicted protein(s) >gi|307679188|gb|GL457059.1| GENE 1 52 - 174 207 40 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNRSEADALDQFLTEPSEELQRIEPEWEYDEEEDIRGNTL >gi|307679188|gb|GL457059.1| GENE 2 158 - 637 468 159 aa, chain + ## HITS:1 COG:no KEGG:LM5578_2383 NR:ns ## KEGG: LM5578_2383 # Name: not_defined # Def: hypothetical protein # Organism: L.monocytogenes_08-5578 # Pathway: not_defined # 4 159 3 158 158 113 48.0 2e-24 MATLYELSNDYLKVLSLAEELDDGTLKDTLDSISDSIDLKVENTAKVVKELESNISIVEK EIKRLQSRKTTLSNNVKNLKGYLQDEMEKVGKTKIKGELFNVGIQNNPVSVNIIDEKLIP IGFLIPQPPKVDKTALKEELKHGEIKGAELVQTKSLRIR >gi|307679188|gb|GL457059.1| GENE 3 649 - 1665 956 338 aa, chain + ## HITS:1 COG:no KEGG:LSEI_1957 NR:ns ## KEGG: LSEI_1957 # Name: not_defined # Def: hypothetical protein # Organism: L.casei # Pathway: not_defined # 1 271 1 274 307 251 50.0 4e-65 MEIKKAKREKIKVPIMITGASGSGKTVSALFIAKGIIEKMHSDLSEQEQWEKIGVIDTEH KRSLLYADSTIGNVDIGEFLHIDFEAPFTVQRYIQAFNLFKQAGVEVVIVDSLTHAWSGE GGILEQVENHQRGNSKNQMLAWNKVKPLEKEFLKLVTGNSMYVIGTSRSKQAYDMEKNEQ GKTQVVKLGLKPDQKDSLEYEFAIALRIDQDHIAEATKDNSNMFNMPFKITKEVGEKIYE WSSEGIDLEKLKDELISSITELATQSENHENMFKELHSKINNVPLKNVKTKVLERMKEML EKIEVPSVEQQSENELDEEQTELFDEANPPIANDFEKK >gi|307679188|gb|GL457059.1| GENE 4 1670 - 2111 176 147 aa, chain + ## HITS:1 COG:no KEGG:Amet_2584 NR:ns ## KEGG: Amet_2584 # Name: not_defined # Def: hypothetical protein # Organism: A.metalliredigens # Pathway: not_defined # 37 145 45 155 230 70 35.0 2e-11 MIGKIINHKGNKLVIEFEDEINSNFLELLANNDDNLAKVEFLDNRQMSQKQNALSHVLIA DVARWSYDEPKWIESVLKYYYEAKSGVYFEHSRATKNEATEWIGFLIEFILKNDIPLEKR YQYLLENNKWFYYCLKYRKCCICGKHA Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:29:27 2011 Seq name: gi|307679187|gb|GL457060.1| Enterococcus faecalis TX2141 genomic scaffold Scfld296, whole genome shotgun sequence Length of sequence - 932 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 931 1033 ## COG1087 UDP-glucose 4-epimerase Predicted protein(s) >gi|307679187|gb|GL457060.1| GENE 1 1 - 931 1033 310 aa, chain + ## HITS:1 COG:lin2620 KEGG:ns NR:ns ## COG: lin2620 COG1087 # Protein_GI_number: 16801682 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Listeria innocua # 1 310 2 311 328 496 74.0 1e-140 MSILVLGGAGYIGSHAVDQLISKGYAVIVVDNLLTGHRSAVHEQATFYEGDIRDKAFLRS VFEKESIEGVLHFAANSLVGESVEKPLMYFNNNVHGTQIALEVMQEFGVKHIVFSSTAAT YGEPKAMPITEETPTNPKNPYGESKLMMEKIMKWCDNAYEMKYVALRYFNVAGAKKDASI GEDHTPETHIVPIILQVALGQRAELSIFGDDYDTPDGTCIRDYVYIEDLIAAHILALEYL KNGGESDVFNLGSNNGYSVKEMLDAAREVTGQEIPATIAPRRAGDPSTLIASSEKAKRVL GWQPEVTEVK Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:29:28 2011 Seq name: gi|307679186|gb|GL457061.1| Enterococcus faecalis TX2141 genomic scaffold Scfld306, whole genome shotgun sequence Length of sequence - 516 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 371 319 ## EF_C0016 hypothetical protein - Prom 392 - 451 7.6 Predicted protein(s) >gi|307679186|gb|GL457061.1| GENE 1 2 - 371 319 123 aa, chain - ## HITS:1 COG:no KEGG:EF_C0016 NR:ns ## KEGG: EF_C0016 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 2 123 1 122 168 196 82.0 2e-49 MVRRTKKEFKPYNDYVDRPFELKWPTAFPLGELTEAIKNTDEYHARNIERLPQQSQQQIE YFLDRSIKQNKVLEIQLNSLDEYDRVKPHVFGVFRGMAEFDVVLIGENEVDFYDIRNIQI HNF Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:29:31 2011 Seq name: gi|307679185|gb|GL457062.1| Enterococcus faecalis TX2141 genomic scaffold Scfld313, whole genome shotgun sequence Length of sequence - 1277 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 1183 544 ## COG3328 Transposase and inactivated derivatives - Prom 1217 - 1276 8.8 Predicted protein(s) >gi|307679185|gb|GL457062.1| GENE 1 1 - 1183 544 394 aa, chain - ## HITS:1 COG:L24515 KEGG:ns NR:ns ## COG: L24515 COG3328 # Protein_GI_number: 15673186 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Lactococcus lactis # 1 390 1 390 391 395 50.0 1e-110 MNDFTTEILKTLANKGDLNELFRVHLEKAVNTLLKTELTAFLDYEKYDRIGFNTGNSRNG SYDRTVKTEYGELHPQIPRDRNGEFKQQTVPAYRRTNDTLEETIIHLFRKGITMSEIADL IEKMYGHHYTPQTMSNITKSFTEEVTAFKGRELHDRYAAIYMDATYIPLKRKTVAKEAIH IAVGIRPDGSKEVLSYAIAPTESITIWEEILLDLQERGLKNVLLFITDGLKGMVGAISRF YPKARFQHCCVHVSRNISHKVRVDDCKEVCDDFKMVYQASSKEVALEARGAFAEKWKTSY PKVVESILSNDHLLTFYDFPLAIRKSIYSTNLIESFNKQIKKYSHRKEQFQNEESMERFL VSSFDTYNQKFLGRSHKGFQQAEGELEQMLSQLI Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:29:32 2011 Seq name: gi|307679184|gb|GL457063.1| Enterococcus faecalis TX2141 genomic scaffold Scfld316, whole genome shotgun sequence Length of sequence - 817 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 229 97 ## MPTP_1437 hypothetical protein 2 1 Op 2 . + CDS 233 - 815 304 ## Cbei_0892 hypothetical protein Predicted protein(s) >gi|307679184|gb|GL457063.1| GENE 1 2 - 229 97 75 aa, chain + ## HITS:1 COG:no KEGG:MPTP_1437 NR:ns ## KEGG: MPTP_1437 # Name: not_defined # Def: hypothetical protein # Organism: M.plutonius # Pathway: not_defined # 2 75 154 228 228 73 44.0 3e-12 KCCICGKHADVCHIEVVGMGRNRKKINHETFTFYAGCRQHHQEEHQVGTKNFLNKYQIKP VKLNTDERKKLNIGG >gi|307679184|gb|GL457063.1| GENE 2 233 - 815 304 194 aa, chain + ## HITS:1 COG:no KEGG:Cbei_0892 NR:ns ## KEGG: Cbei_0892 # Name: not_defined # Def: hypothetical protein # Organism: C.beijerinckii # Pathway: not_defined # 1 93 1 93 277 115 60.0 7e-25 MERAFKGIWIPKNVWLDDELSWIEKFLIVEIDSLDNENGCFASNEYFSNFFGLSKDRVSK LISGLKEKGYIDVSYQYKSGTKSIERRVVKITDRYRRKQLEGIGENNYRGIGENAKDNNT LLNNTENNTKNKKNSVEPSSTMPEQFEKVWKTYPKKTNKKKAREQFLKKFKSEEDLVQFE KGYKEYLAYIKLND Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:30:03 2011 Seq name: gi|307679183|gb|GL457064.1| Enterococcus faecalis TX2141 genomic scaffold Scfld341, whole genome shotgun sequence Length of sequence - 89673 bp Number of predicted genes - 83, with homology - 80 Number of transcription units - 46, operones - 25 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 82 - 141 5.9 1 1 Tu 1 . + CDS 186 - 872 927 ## COG0588 Phosphoglycerate mutase 1 + Term 1026 - 1063 -0.1 - Term 851 - 893 -0.5 2 2 Tu 1 . - CDS 938 - 2125 1369 ## COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family - Prom 2153 - 2212 5.5 3 3 Op 1 20/0.000 - CDS 2254 - 3258 1001 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 4 3 Op 2 35/0.000 - CDS 3255 - 4190 825 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component - Term 4203 - 4231 -0.0 5 3 Op 3 . - CDS 4262 - 5062 259 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 5127 - 5186 8.2 + Prom 5044 - 5103 8.5 6 4 Op 1 . + CDS 5199 - 5375 91 ## gi|315143253|gb|EFT87269.1| hypothetical protein HMPREF9495_02937 7 4 Op 2 . + CDS 5518 - 6237 915 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component + Term 6244 - 6284 7.1 - Term 6231 - 6271 7.1 8 5 Op 1 1/0.077 - CDS 6277 - 6984 1033 ## COG0813 Purine-nucleoside phosphorylase 9 5 Op 2 4/0.000 - CDS 7002 - 7820 1134 ## COG0005 Purine nucleoside phosphorylase 10 5 Op 3 . - CDS 7837 - 9003 1352 ## COG1015 Phosphopentomutase - Prom 9043 - 9102 5.6 - Term 9202 - 9236 -0.4 11 6 Tu 1 . - CDS 9305 - 9898 454 ## COG3548 Predicted integral membrane protein - Prom 9931 - 9990 8.3 - Term 10119 - 10167 8.6 12 7 Op 1 26/0.000 - CDS 10173 - 11126 1177 ## COG1079 Uncharacterized ABC-type transport system, permease component 13 7 Op 2 24/0.000 - CDS 11126 - 12259 1304 ## COG4603 ABC-type uncharacterized transport system, permease component 14 7 Op 3 15/0.000 - CDS 12252 - 13820 2195 ## COG3845 ABC-type uncharacterized transport systems, ATPase components - Prom 13921 - 13980 3.8 - Term 13925 - 13968 7.1 15 8 Op 1 2/0.077 - CDS 14026 - 15111 1467 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein 16 8 Op 2 . - CDS 15165 - 16238 1511 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein - Prom 16261 - 16320 3.3 + Prom 15921 - 15980 6.3 17 9 Tu 1 . + CDS 16156 - 16353 57 ## + Term 16464 - 16499 -0.5 18 10 Op 1 3/0.000 - CDS 16334 - 16729 473 ## COG0295 Cytidine deaminase 19 10 Op 2 7/0.000 - CDS 16767 - 17429 903 ## COG0274 Deoxyribose-phosphate aldolase 20 10 Op 3 1/0.077 - CDS 17457 - 18758 1748 ## COG0213 Thymidine phosphorylase - Prom 18783 - 18842 6.6 21 11 Tu 1 . - CDS 18899 - 19906 1075 ## COG1609 Transcriptional regulators - Prom 19984 - 20043 10.4 + Prom 19941 - 20000 8.4 22 12 Tu 1 . + CDS 20066 - 21079 992 ## COG1816 Adenosine deaminase + Term 21084 - 21120 2.2 - Term 21070 - 21107 2.4 23 13 Op 1 . - CDS 21112 - 21720 767 ## COG2813 16S RNA G1207 methylase RsmC 24 13 Op 2 . - CDS 21735 - 22322 740 ## COG2755 Lysophospholipase L1 and related esterases - Prom 22352 - 22411 4.0 + Prom 22359 - 22418 5.6 25 14 Tu 1 . + CDS 22477 - 23400 967 ## COG1072 Panthothenate kinase + Prom 23445 - 23504 5.5 26 15 Tu 1 . + CDS 23712 - 25274 1748 ## COG0519 GMP synthase, PP-ATPase domain/subunit + Term 25279 - 25335 19.0 + Prom 25344 - 25403 6.3 27 16 Op 1 . + CDS 25457 - 25753 124 ## EF0124 hypothetical protein + Term 25834 - 25886 4.1 + Prom 25812 - 25871 4.6 28 16 Op 2 . + CDS 25904 - 26449 730 ## EF0120 hypothetical protein + Term 26453 - 26506 15.6 - Term 26440 - 26494 17.1 29 17 Op 1 . - CDS 26497 - 27285 870 ## COG0384 Predicted epimerase, PhzC/PhzF homolog 30 17 Op 2 . - CDS 27287 - 28252 835 ## COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog - Prom 28283 - 28342 4.4 + Prom 28259 - 28318 6.8 31 18 Op 1 . + CDS 28350 - 29762 1077 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs 32 18 Op 2 . + CDS 29759 - 30202 363 ## COG4815 Uncharacterized protein conserved in bacteria + Term 30240 - 30275 7.1 - Term 30196 - 30231 7.1 33 19 Tu 1 . - CDS 30283 - 31551 1236 ## COG0251 Putative translation initiation inhibitor, yjgF family - Prom 31578 - 31637 7.5 - Term 31759 - 31804 14.6 34 20 Op 1 . - CDS 31836 - 34322 2432 ## COG3525 N-acetyl-beta-hexosaminidase - Prom 34392 - 34451 8.4 - Term 34491 - 34552 4.6 35 20 Op 2 . - CDS 34554 - 35570 1168 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases - Prom 35628 - 35687 6.2 + Prom 35663 - 35722 5.0 36 21 Op 1 . + CDS 35750 - 36085 440 ## EF0110 ArsR family transcriptional regulator 37 21 Op 2 . + CDS 36082 - 36762 634 ## COG0693 Putative intracellular protease/amidase + Term 36765 - 36808 11.7 - Term 36748 - 36801 18.1 38 22 Op 1 . - CDS 36853 - 38304 1465 ## COG1288 Predicted membrane protein 39 22 Op 2 . - CDS 38352 - 39041 450 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 40 22 Op 3 8/0.000 - CDS 39069 - 40001 1189 ## COG0549 Carbamate kinase - Prom 40023 - 40082 3.4 - Term 40025 - 40067 9.4 41 23 Op 1 7/0.000 - CDS 40107 - 41126 1405 ## COG0078 Ornithine carbamoyltransferase 42 23 Op 2 1/0.077 - CDS 41155 - 42381 1429 ## PROTEIN SUPPORTED gi|149020061|ref|ZP_01835035.1| 50S ribosomal protein L33 - Prom 42546 - 42605 19.4 - Term 42623 - 42675 19.7 43 24 Tu 1 . - CDS 42678 - 43166 479 ## COG1438 Arginine repressor - Prom 43322 - 43381 5.3 + Prom 43170 - 43229 6.0 44 25 Tu 1 . + CDS 43409 - 43888 418 ## COG1438 Arginine repressor + Term 43959 - 43993 3.1 + Prom 43975 - 44034 8.4 45 26 Tu 1 . + CDS 44055 - 44969 767 ## COG2267 Lysophospholipase + Term 44974 - 45013 8.6 - Term 44962 - 45001 8.6 46 27 Op 1 . - CDS 45006 - 46277 1407 ## COG0172 Seryl-tRNA synthetase 47 27 Op 2 9/0.000 - CDS 46304 - 47197 1284 ## COG1760 L-serine deaminase 48 27 Op 3 1/0.077 - CDS 47212 - 47919 874 ## COG1760 L-serine deaminase 49 27 Op 4 . - CDS 47894 - 49000 1510 ## COG1299 Phosphotransferase system, fructose-specific IIC component - Prom 49132 - 49191 7.1 + Prom 49001 - 49060 9.9 50 28 Tu 1 . + CDS 49257 - 49937 667 ## COG2964 Uncharacterized protein conserved in bacteria + Term 49942 - 49994 11.0 - Term 49929 - 49979 18.1 51 29 Op 1 . - CDS 49996 - 50781 757 ## EF0095 putative lipoprotein - Prom 50809 - 50868 5.0 - Term 50874 - 50916 6.4 52 29 Op 2 . - CDS 50937 - 51698 921 ## COG2116 Formate/nitrite family of transporters - Prom 51795 - 51854 7.0 - Term 51804 - 51851 11.1 53 30 Op 1 . - CDS 51875 - 54727 2224 ## EF0093 cell wall surface anchor family protein 54 30 Op 2 . - CDS 54742 - 54981 369 ## EF0092 hypothetical protein - Term 55178 - 55242 20.5 55 31 Op 1 . - CDS 55326 - 56831 1335 ## EF0091 hypothetical protein - Prom 56852 - 56911 4.2 56 31 Op 2 . - CDS 56913 - 57824 1080 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase - Prom 57871 - 57930 8.3 - Term 58044 - 58082 9.2 57 32 Op 1 1/0.077 - CDS 58103 - 60022 2003 ## COG4932 Predicted outer membrane protein 58 32 Op 2 . - CDS 60139 - 64200 4111 ## COG4932 Predicted outer membrane protein - Prom 64418 - 64477 7.0 59 33 Op 1 . + CDS 64911 - 66398 1185 ## EF0086 hypothetical protein 60 33 Op 2 . + CDS 66392 - 67876 1054 ## EF0085 hypothetical protein + Term 67914 - 67980 21.0 - Term 67961 - 68014 2.1 61 34 Op 1 . - CDS 68032 - 68211 312 ## EF0083 hypothetical protein 62 34 Op 2 . - CDS 68232 - 69467 1448 ## COG0477 Permeases of the major facilitator superfamily - Prom 69626 - 69685 7.1 - Term 69773 - 69817 13.2 63 35 Op 1 . - CDS 69834 - 70076 454 ## COG2261 Predicted membrane protein 64 35 Op 2 . - CDS 70100 - 70660 1010 ## COG1302 Uncharacterized protein conserved in bacteria 65 35 Op 3 . - CDS 70719 - 71231 782 ## COG1302 Uncharacterized protein conserved in bacteria 66 35 Op 4 . - CDS 71244 - 71435 339 ## EF0078 hypothetical protein 67 35 Op 5 . - CDS 71448 - 72020 662 ## EF0077 hypothetical protein 68 35 Op 6 . - CDS 72033 - 72926 1044 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - Prom 73007 - 73066 11.9 + Prom 72993 - 73052 7.0 69 36 Tu 1 . + CDS 73201 - 73854 779 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases + Term 73860 - 73905 15.0 70 37 Op 1 . - CDS 73897 - 74631 646 ## EF0073 Cro/CI family transcriptional regulator 71 37 Op 2 . - CDS 74621 - 74815 188 ## EF0073 Cro/CI family transcriptional regulator 72 37 Op 3 . - CDS 74895 - 74987 80 ## - Prom 75234 - 75293 16.4 - Term 75313 - 75357 9.1 73 38 Tu 1 . - CDS 75363 - 77702 2497 ## EF0071 putative lipoprotein - Prom 77765 - 77824 4.6 + Prom 77639 - 77698 3.1 74 39 Tu 1 . + CDS 77720 - 77794 64 ## + Term 78000 - 78062 3.0 - Term 77788 - 77824 -0.1 75 40 Tu 1 . - CDS 77880 - 78575 721 ## COG3010 Putative N-acetylmannosamine-6-phosphate epimerase - Prom 78744 - 78803 6.1 + Prom 78708 - 78767 6.7 76 41 Tu 1 . + CDS 78800 - 79228 372 ## EF0068 hypothetical protein + Term 79302 - 79343 3.2 - Term 79278 - 79339 11.0 77 42 Op 1 29/0.000 - CDS 79352 - 80368 1453 ## COG2255 Holliday junction resolvasome, helicase subunit 78 42 Op 2 . - CDS 80381 - 81037 772 ## COG0632 Holliday junction resolvasome, DNA-binding subunit - Prom 81175 - 81234 4.2 79 43 Tu 1 . - CDS 81240 - 82214 702 ## COG4823 Abortive infection bacteriophage resistance protein - Prom 82365 - 82424 10.5 + Prom 82530 - 82589 5.2 80 44 Op 1 . + CDS 82614 - 83600 1153 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases 81 44 Op 2 . + CDS 83615 - 83839 342 ## EF0064 hypothetical protein + Term 83842 - 83890 11.1 - Term 83818 - 83885 15.2 82 45 Tu 1 . - CDS 83886 - 85565 2018 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 85614 - 85673 13.0 - Term 85653 - 85689 2.0 83 46 Tu 1 . - CDS 85701 - 89582 4727 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases Predicted protein(s) >gi|307679183|gb|GL457064.1| GENE 1 186 - 872 927 228 aa, chain + ## HITS:1 COG:NMA1801 KEGG:ns NR:ns ## COG: NMA1801 COG0588 # Protein_GI_number: 15794692 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Neisseria meningitidis Z2491 # 3 228 2 227 227 334 73.0 8e-92 MPKLVFSRHGLSEWNALNQFTGWADVDLAPEGVEEAKEGGRKIKEAGIEFDVAYTSVLTR AIKTCNYLLEYSDQLWVPQIKSWRLNERHYGKLQGLNKKETAEKYGDEQVHIWRRSYDTL PPLMEATDEGSAANDRRYAMLDQRDIPGGENLKVTLERALPFWQDEIAPALKDNKTVLVA AHGNSLRALAKHIEGISDEDIMDLEIPTGKPLVYELNDDLTVKEKYYL >gi|307679183|gb|GL457064.1| GENE 2 938 - 2125 1369 395 aa, chain - ## HITS:1 COG:CAC3299 KEGG:ns NR:ns ## COG: CAC3299 COG1979 # Protein_GI_number: 15896543 # Func_class: C Energy production and conversion # Function: Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family # Organism: Clostridium acetobutylicum # 1 386 1 386 389 432 54.0 1e-121 MENFNFYVPTDIRFGKDRLDELPAVLDQFGKNVLLVYGGGSIKRNGLYQQITDLAQKNGH TLIELSGVEPNPRIETVRKGIELCKENQVDVILAVGGGSTIDCSKAIAAGFYSEEDIWTV IAARKGYTGPALPIVTILTLAATGSEMNAGAVISNLETNQKLGFGGPNMIPKVSFLDPTN TFTVPQNQTAAGSADIFSHLIENYFSISTGTDVQDFVSEGLMRTVIKNCPIALENPEDYD ARANLMWASSLALNGLTGRGKQGVWSCHPMEHELSAFYDITHGIGLAILTPRWMNYVLSE QTVGKFAQFARNVWGIVEQEEEVAAKKGIQALYDYFVACGIPMTLPEVGIEADKFEEMAQ QAVAHSAIAEKAYVPLDVADIVAIYKDCLTESQFI >gi|307679183|gb|GL457064.1| GENE 3 2254 - 3258 1001 334 aa, chain - ## HITS:1 COG:SA0604 KEGG:ns NR:ns ## COG: SA0604 COG0609 # Protein_GI_number: 15926326 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Staphylococcus aureus N315 # 10 332 14 337 338 241 41.0 1e-63 MTQKKVSRWVAILIVGIILTACISLTQGELSVSVMDLKALLLGQGSQAKQLLVWDFRLPR IVLAVLAGAALGLSGAILQGITRNPLADTGILGINAGAGLAVILFISFVETTSITTFALP LVALVGGLLAAVGILVIAYHHRLGLTPVRMVLAGVILSTGISALTLLITSKIDTEKYRFV TMWQAGSIWGSNWFFVGALLPWLVIGFFFAMKRHRLLDILQLGDETAISVGIAVKKERIV SLLLAVMLAASAISVTGGINFLGLLAPHIARKCGFTQQKQVLPLAALFGSLLLLVSDTIG RLLPGNGEMPAGIIVAIIGAPYFLYLLIKTSDSL >gi|307679183|gb|GL457064.1| GENE 4 3255 - 4190 825 311 aa, chain - ## HITS:1 COG:lin2072 KEGG:ns NR:ns ## COG: lin2072 COG0609 # Protein_GI_number: 16801138 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Listeria innocua # 8 306 38 336 341 258 46.0 7e-69 MLLSLMFGATSVSIQTIIESFRHFDATNQAHQVIQTVRLPRILGAAFVGASLAVSGALAQ GITQNPLADSGLLGINAGAGLGLALVFAFLPQASYWWLLVVSFLGAGVSVALIYYLSNHS IRGASPMRLTLVGAGISALFLSFSQFLAIQFNLSQELTFWFLGGVSVISWAQLKIVVPIF LGAFALAILISPSVTILRFGDDATIGLGRNPQRIRLFASITILLLSGLSVALVGSVSFVG LVVPHVMRTVSGENYRRLIPFSALGGTLLVLVADLIARMVNPPFETPFGIITALIGIPFF LYLFRKGGQLG >gi|307679183|gb|GL457064.1| GENE 5 4262 - 5062 259 266 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 4 227 2 226 245 104 30 2e-21 MNYLEAEDLTTGYGRQVISEALNCSFEAGTITSIIGPNGCGKSTLLKTLARILLAEKGKV FIKNQELQHFSSKEVAQELAILSQTPENTIDLSVFDLVSFGRYPYQSGWKSVTAEDQEYI QWALELTGLTELARESVAILSGGQRQRVWIAMALVQDTDILILDEPTTYLDPAHQLEILN VLKRINQEHQKTIVMTIHDINLASRFSDRVIAMKEGKIINEGTPQEVITVTGLADVFAIQ AEISYHSQTQRPLVLSYELMEMELDG >gi|307679183|gb|GL457064.1| GENE 6 5199 - 5375 91 58 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|315143253|gb|EFT87269.1| ## NR: gi|315143253|gb|EFT87269.1| hypothetical protein HMPREF9495_02937 [Enterococcus faecalis TX2141] # 1 58 1 58 58 104 100.0 2e-21 MQLICSKKQAMIDKRSFLTDNENRYQLKIKELHNETLKKDGPNWYNPSSWFILTRSLW >gi|307679183|gb|GL457064.1| GENE 7 5518 - 6237 915 239 aa, chain + ## HITS:1 COG:alr2213 KEGG:ns NR:ns ## COG: alr2213 COG0614 # Protein_GI_number: 17229705 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Nostoc sp. PCC 7120 # 9 238 92 323 325 84 29.0 2e-16 MAQWTVGQGSIQDYLAKELKDVPTISYDLPYEAVLKFEPDLLLISSSALVEGGKYKEYSK IAPTYVVKNGENVTWRDQLEDIATVLDKKEQAKKVLEDYDTLTKGVQEDLGKKDAGKSAA VLWVTNNQVFMVSDNRSSGTVLYQDLGLQVPKLVEEISKNATADWNQVSLEKLAELDADH IFLVNSDESAPLFQEAIWKNLPAVKNNQVHTYDKKSSWLYNGPIANTQIVEDVKKALLN >gi|307679183|gb|GL457064.1| GENE 8 6277 - 6984 1033 235 aa, chain - ## HITS:1 COG:L156559 KEGG:ns NR:ns ## COG: L156559 COG0813 # Protein_GI_number: 15672913 # Func_class: F Nucleotide transport and metabolism # Function: Purine-nucleoside phosphorylase # Organism: Lactococcus lactis # 4 234 5 233 234 311 67.0 6e-85 MSVHIEAKPGEIADKILLPGDPLRAKYIAETFLENPVCYNQVRGMLGYTGTYKGQRVSVQ GTGMGMPSAGIYAHELINSYDVKKLIRVGTCGSISEKVNVRELVIAQAAATPSSAIRNDF PKYDFPQIASFDLLLKSYEIAKAKGFTTHVGNVLSDDVFYKDSLDDVFRLGRYGVLAIEM EAAMLYYLAAKFDVEALAIMTVSDSLVTGEETTAEERQTTFNEMIEVGLETAIAN >gi|307679183|gb|GL457064.1| GENE 9 7002 - 7820 1134 272 aa, chain - ## HITS:1 COG:SPy0892 KEGG:ns NR:ns ## COG: SPy0892 COG0005 # Protein_GI_number: 15674917 # Func_class: F Nucleotide transport and metabolism # Function: Purine nucleoside phosphorylase # Organism: Streptococcus pyogenes M1 GAS # 3 272 2 269 269 341 64.0 7e-94 MTTLTNHLNETTEFLKEKGVQQADFGLILGSGLGELANEITDAIAIPFSEIPHFSVSTVV GHAGQLVYGTLSGKKVLAMQGRFHYYEGHSMQTVTYPVRVMAALGIHSMIVTNAAGGVNE TYTPGNLMLINDHINFTGDNPLIGENDEEIGPRFPDMSHAYTQEYREVAKKVAAEQNIDL KEGVYMGFSGPTYETPAEIRMSRTMGADAVGMSTVSEVIVAVHSGMKVLGISCITNLAAG MQSSLNHAEVVETTERVKGQFKELVKATLAAL >gi|307679183|gb|GL457064.1| GENE 10 7837 - 9003 1352 388 aa, chain - ## HITS:1 COG:SA0134 KEGG:ns NR:ns ## COG: SA0134 COG1015 # Protein_GI_number: 15925843 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphopentomutase # Organism: Staphylococcus aureus N315 # 2 388 5 392 392 545 69.0 1e-155 MFKRVHLIVLDSVGIGEAPDAEKFGDVGSDTLGHIAKEAGLTIPHLEKLGLGTIAPLTGV KAVADHDGYATKLEEISVGKDTMTGHWEIMGLNIKKPFRVFPNGFPEELLKQIEDFSGRK VVCNKPYSGTAVIDDYGEHQMKTGDLIVYTSADPVLQIAAHEDIIPLEELYKICQYVRDI TKDEPYMIGRIIARPYVGEPGNFTRTSNRHDYALDPFGHTVLDSLKENGNDVIAVGKIND IFNGQGITEAIRTKSNMDGVDQLLTVMNKDFTGLSFTNLVDFDALYGHRRDVKGYAKAIE DFDGRLPEIMAAMAEDDLLLITADHGNDPTFPGTDHTREYVPLLAYSKKMTKQGSLPQGF YSDISATIAENFEVPATENGQSFLNQLQ >gi|307679183|gb|GL457064.1| GENE 11 9305 - 9898 454 197 aa, chain - ## HITS:1 COG:L85237 KEGG:ns NR:ns ## COG: L85237 COG3548 # Protein_GI_number: 15672844 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Lactococcus lactis # 1 190 1 185 188 88 32.0 8e-18 MNKTRVEAFSDAVIAIIMTIMILEIKTPQVGVLAGLIENIPYFLSFIVSFIFICIAWYNH HYIMSVTHWFSKKAFWANNFWLFSMAFIPVATAWVSEFWWMRAPVYFYLVVYTVWDFAYF LLTRIIYEDNAVKDPQGAAKLRKSKSYSKATKIIHLCLFAIGYIGIYFYPPIGIGVILSE AVIWYLNVPKEGDRLEC >gi|307679183|gb|GL457064.1| GENE 12 10173 - 11126 1177 317 aa, chain - ## HITS:1 COG:SPy1225 KEGG:ns NR:ns ## COG: SPy1225 COG1079 # Protein_GI_number: 15675189 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 1 317 1 318 318 395 68.0 1e-110 MDLATISSIITQTLVYATPLILTALGGTFSERSGVVNVGLEGIMVMGAFSSVVFNLTFAD TFGAATPWIACLVGGVVGIVFSLLHAVATINLRADHIISGTVINLMAPALGVFLVKVIYQ KGQTDMITQSFGYFSFPGLSKIPVIGELFFAKTSLPAFVAILIAILAWFVIYKTRFGLRL RSVGEHPQAADTLGINVYLMRYSGVLLSGFLGGMGGAVFAQSIAGRFGITTIAGQGFISM AAMIFGKWNPLGAMGAALFFGFAQNLSIAGENLPIISEIPKVYLQAAPYVLTILVLVVFF GKSSGPKANGKNYVKTK >gi|307679183|gb|GL457064.1| GENE 13 11126 - 12259 1304 377 aa, chain - ## HITS:1 COG:SP0847 KEGG:ns NR:ns ## COG: SP0847 COG4603 # Protein_GI_number: 15900734 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 5 349 2 345 352 342 58.0 9e-94 MNNRSEKIRNILVPVLSVIMGFLLGAIIMVIFGYDPVAGYQAMFETAFQGKKSIGEIFVT AAPLIFTALGFSVANSAGFFNIGLSGQALCGWVASIWVALSMPDAPRMIALPVAIIVGAV AGALAAAIPGFLRAYFGTSEVIVTIMLNYILLYTGNHIANNVMKPSIMANKGITKMIGAN ASLRSPFLTSISDGSRLNIGIFLAFIFLILVWFLMKKTTLGFEIRSVGLNPFASEYAGMS SKRTIILSMMISGTLAGLGGAVQGLGTFQNFFIQNTSLSIGFDGMAVSLLGAGSSIGILL SALLFGMLKLGGQGMPLIAGVPTELVDVVIAAIIFFVGISYLIRFLLAKASGSKKEVAIV ETIEAAPDKNNQEGGDI >gi|307679183|gb|GL457064.1| GENE 14 12252 - 13820 2195 522 aa, chain - ## HITS:1 COG:SP0846 KEGG:ns NR:ns ## COG: SP0846 COG3845 # Protein_GI_number: 15900733 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport systems, ATPase components # Organism: Streptococcus pneumoniae TIGR4 # 5 512 4 511 511 673 71.0 0 MSQEENVIEMRKITKEFGTFKANDQIDLQVKPGEIHALLGENGAGKSTLMNILSGLLEPT SGEIYMNGEKVNITSPTAANRLGIGMVHQHFMLVEAFTVTENIILGSEPTHGGILDRKKA KKEIEEVSKQYGLDVNPNAYIRDISVGMQQRVEILKTLYRGANVLIFDEPTAVLTPQEID ELMIILKELTDEGKSIILITHKLDEIKKVADRCTVIRRGQSIGTVNVKDVSSQQLADMMV GRSVSFKTEKKPAQPKETILSIKDLVVKESRGLDAVKNLSLDVRAGEVVGIAGIDGNGQT ELIQALAGLTKVENGSIHLNEKEITNRKPREITEMGVAHVPEDRHKYGLVLEMTLAENIG LQTYYQKPYSSTGILNYRMINKHARELIEEYDVRTPNELVPARALSGGNQQKAIIAREVD RDPDLLIVSQPTRGLDVGAIEYIHRRLIEQRDKNKAVLLVSFELDEILNVSDRIAVIHAG EIVGIVDPKETTENELGLLMAGYSLEEARAELSKVEAGETVE >gi|307679183|gb|GL457064.1| GENE 15 14026 - 15111 1467 361 aa, chain - ## HITS:1 COG:SP0845 KEGG:ns NR:ns ## COG: SP0845 COG1744 # Protein_GI_number: 15900732 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Streptococcus pneumoniae TIGR4 # 39 359 35 350 350 297 58.0 3e-80 MKKAKLFGFSLIALGLSVSLAACGGGKGKTAESGGGKGDAAHSAVIITDTGGVDDKSFNQ SSWEGLQAWGKEHDLPEGSKGYAYIQSNDAADYTTNIDQAVSSKFNTIFGIGYLLKDAIS SAADANPDTNFVLIDDQIDGKKNVVSATFRDNEAAYLAGVAAANETKTNKVGFVGGEEGV VIDRFQAGFEKGVADAAKELGKEITVDTKYAASFADPAKGKALAAAMYQNGVDIIFHASG ATGQGVFQEAKDLNESGSGDKVWVIGVDRDQDADGKYKTKDGKEDNFTLTSTLKGVGTAV QDIANRALEDKFPGGEHLVYGLKDGGVDLTDGYLNDKTKEAVKTAKDKVISGDVKVPEKP E >gi|307679183|gb|GL457064.1| GENE 16 15165 - 16238 1511 357 aa, chain - ## HITS:1 COG:SPy1228 KEGG:ns NR:ns ## COG: SPy1228 COG1744 # Protein_GI_number: 15675192 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Streptococcus pyogenes M1 GAS # 5 356 4 350 350 292 54.0 6e-79 MKQAKFLGLGLAAVALTIGLAACGGNSKKNANTKGDPQHSVVMVTDTAGIDDKSFNQSAW EGMQEWGKEHKLPEGPQGYAYIQSNEASDYTSNIDQAISSQFKTIFGIGYLLKNAVVDAA DANPETNFVLIDDTVNGKNNVASATFRDNESAYLAGVAAANTTKTNKVGFIGGVEGPVIG RFQAGFEKGVADAGKKLGKDIQITSTYAGTFADASKGRALASSMYQAGADIIYHAAATTG QGIFQEAKALNETGSKDKVWVIGVDRDQNEDGKYTTKDGKDDNLTLASTIKGVNIAVKKI SDLALEDKFPGGEHLTYGLKDGGVDLTTEALSDQAKTAVKEAKEQIISGDVKVPDQP >gi|307679183|gb|GL457064.1| GENE 17 16156 - 16353 57 65 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLLPPHAANPMVKATAANPRPKNFACFTFRKAPYYFIYYFIRIYAIEIYFEPNETLCPFF KNLYL >gi|307679183|gb|GL457064.1| GENE 18 16334 - 16729 473 131 aa, chain - ## HITS:1 COG:SP0844 KEGG:ns NR:ns ## COG: SP0844 COG0295 # Protein_GI_number: 15900731 # Func_class: F Nucleotide transport and metabolism # Function: Cytidine deaminase # Organism: Streptococcus pneumoniae TIGR4 # 6 128 5 127 129 171 67.0 4e-43 MTVKQEWLDCAVEALAHAYVPYSNFPVGACLVTADGKMYQGVNIENASFGLTNCAERTAI FKAISEDERTFQHLVVAGNTEAPISPCGACRQVMAEFFDPQMPVTLVGKDGATKTMTVEA LLPYSFTDKDF >gi|307679183|gb|GL457064.1| GENE 19 16767 - 17429 903 220 aa, chain - ## HITS:1 COG:L63310 KEGG:ns NR:ns ## COG: L63310 COG0274 # Protein_GI_number: 15673422 # Func_class: F Nucleotide transport and metabolism # Function: Deoxyribose-phosphate aldolase # Organism: Lactococcus lactis # 1 216 1 215 220 280 68.0 2e-75 MELNRMIDHTILKPEATEAAVQKIIDEAKEYNFFSVCINPCWVAFASEQLADTDVAVCTV IGFPLGANTPEVKAYEAADAIKNGANEVDMVINIGALKSQQYDYVRQDIQGVVDAAKGKA LVKVIIETALLTDEEKVKACELAKEAGADFVKTSTGFSTGGAKVADIRLMRETVGPDMGV KASGCVHNAEEALAMIEAGATRIGASTGVAIVSGATGEGY >gi|307679183|gb|GL457064.1| GENE 20 17457 - 18758 1748 433 aa, chain - ## HITS:1 COG:lin2101 KEGG:ns NR:ns ## COG: lin2101 COG0213 # Protein_GI_number: 16801167 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine phosphorylase # Organism: Listeria innocua # 1 433 1 433 433 541 69.0 1e-154 MRMVDIIEKKRDGHQLTSEEIQFIINGYTDGSIPDYQVSAFLMAVFYQDMTDEEITQMTL AMVHSGEIVDLSSIEGIKVDKHSTGGVGDTTTLILAPLVASVGVNVAKMSGRGLGYTGGT LDKLEAIPGFKVELTEERFIQLVNDTKVAVIGQSGDLAPADKKLYALRDVTATVDSIPLI ASSIMSKKIAAGADAIVLDVTTGEGAFMKDLASARRLAETMVRIGKLANRQTMAVISDMS QPLGEAIGNSLEIVEAIETLQGNGPEDLVEMCYVLGSQMVVLAKKAETLDEARALLEEAL TSGRALAKFKEMIENQGGDSSVVDQPEKLLTATYQFDLPAKETGVVQKIVANEIGVAAML LGAGRATKEDTIDFAVGLKLHKKVGSPVEKGESLLTIYANREDVTEVEQLLYKNIEIGPT GEEPILIHDIITE >gi|307679183|gb|GL457064.1| GENE 21 18899 - 19906 1075 335 aa, chain - ## HITS:1 COG:lin2102 KEGG:ns NR:ns ## COG: lin2102 COG1609 # Protein_GI_number: 16801168 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 335 1 333 336 321 47.0 1e-87 MKLTIKEIADMAGVSVTTVSQILNNKGSRFSEKTRNKVLAVVAENHYKPDYFASNVINRH SKTIGMIVPDVTDFFFSKVIEGVETYLNSLGYMILLCNSKHDSEQAMQYVSELIHRSVDG IIFATPNVLPENHILKDRREHPIPVILVDRGINPRDSGRLIVKEYEGAYQAVHHLIQQGH QHIGMLRESAGYYRLTERVTAYQHALQDNNLPFRPHYVCAGELNLHGGYAAAKEVLKNEE ITAIFCGNDEMAMGAYQAIEEAGKKIPDDISVVGFDGLEISEYLVPSLTTIYQPSFDIGY YAAKFLVEAIADPTGKVPNKVFDATFIARKSTKPI >gi|307679183|gb|GL457064.1| GENE 22 20066 - 21079 992 337 aa, chain + ## HITS:1 COG:L87453 KEGG:ns NR:ns ## COG: L87453 COG1816 # Protein_GI_number: 15672269 # Func_class: F Nucleotide transport and metabolism # Function: Adenosine deaminase # Organism: Lactococcus lactis # 6 335 15 347 352 289 43.0 6e-78 MEESRVRQLPKIELHCHLDGSIRPTTLRTIAEKQNIPLPQDEQALKELVVAPEKCTDLND YLTRFDFVLTCLQTAEALQAAAYDVISQAAEDGVAYIEVRFAPSQHTEKGLRLPEIVTAV LTGLKQGEEDFGVKSNALLCGMRHDQQQAIEKIVHLAHDFRETGVVGFDLAGNEVDFPPY TFEDVLALANQLSIPLTLHAGECGCGKNVADAVTLGATRIGHGIALKDTPEYLALLKEKK VLLEMCPTSNFQTGTVKTLAEYPFQQFIEAGLAVCINTDNRTVSDTTLTKEFMKLATWYQ LSYDEMKQLTKNALAGAFLSPDEKKLLNQKIDQAYLF >gi|307679183|gb|GL457064.1| GENE 23 21112 - 21720 767 202 aa, chain - ## HITS:1 COG:lin0284 KEGG:ns NR:ns ## COG: lin0284 COG2813 # Protein_GI_number: 16799361 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S RNA G1207 methylase RsmC # Organism: Listeria innocua # 3 199 4 200 201 229 57.0 2e-60 MANHYYTENPELAHDLESWSFPLRGRTFQFTTDSGVFSRGTVDYGSRVLIDAFEWENLPA GRLLDVGCGYGPIGLSLAAATGRLVEMVDVNQRAVGLAQMNAQRNQITTVDIHSSNVYET LNETTYAAIVSNPPIRAGKKVVHGILTGAFPLLKVGGTLTVVIQKKQGAPSAEKKMAEVF GNVEIVTKDKGYYILRSVKEAE >gi|307679183|gb|GL457064.1| GENE 24 21735 - 22322 740 195 aa, chain - ## HITS:1 COG:L161059 KEGG:ns NR:ns ## COG: L161059 COG2755 # Protein_GI_number: 15673705 # Func_class: E Amino acid transport and metabolism # Function: Lysophospholipase L1 and related esterases # Organism: Lactococcus lactis # 3 191 8 189 191 103 40.0 2e-22 MRKIVLFGDSITAGYLDEAVSPVLVDLVKRDIAAMGLEEVAVINAGMPGDTTEDGLKRLN KEVLIEKPDEVVIFFGANDASLDRNITVATFRENLETMIHEIGSEKVILITPPYADSGRR PERPQTRIKELVKVAQEVGAAHNLPVIDLYKAMTVYPGTDEFLQADGLHFSQVGYELLGA LIVREIKGRLKPKQA >gi|307679183|gb|GL457064.1| GENE 25 22477 - 23400 967 307 aa, chain + ## HITS:1 COG:L66222 KEGG:ns NR:ns ## COG: L66222 COG1072 # Protein_GI_number: 15673426 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate kinase # Organism: Lactococcus lactis # 1 307 1 306 306 347 56.0 1e-95 MDDKMNYYPISREEWHGFYHDGKAPLTEAELDNIKSVNDQISLKDVQEIYVPLTHLIHLY MKEFESLTLSKGLFLHEYVSVPPFIIGIAGSVAVGKSTTARLLQRILARTFKRRNVQLIT TDGFLYPNKVLEEQGIMDRKGFPESYDMEKLINFLNEVKSGKDEIKAPVYSHSVYDVIEG EYELIQQPDILIVEGINTLQLPANQQIYVSDFFDFSIFVDADPALIEKWYLERFGALLDT AFLDPNNYYYQYAIGKREDAFAMARNVWKTVNLPNLEEYILPTRGRADIILHKTENHLID QIYLRKY >gi|307679183|gb|GL457064.1| GENE 26 23712 - 25274 1748 520 aa, chain + ## HITS:1 COG:SP1445_2 KEGG:ns NR:ns ## COG: SP1445_2 COG0519 # Protein_GI_number: 15901295 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase, PP-ATPase domain/subunit # Organism: Streptococcus pneumoniae TIGR4 # 202 520 1 316 316 567 87.0 1e-161 MTNVADLTSVEKIIVLDFGSQFNQLITRRIREFGVFSELLSHRTTAEEIRKIAPKGIIFS GGPNSVYDKDAFSIDPEIYELGIPILGICYGMQLMTHNLGGKVEPAANREYGKAELEILG DATLFQGTPAKQTVWMSHGDLVTEIAPGFEKVGTSNDCPIASIEDANRKFYGVQFHPEVR HSEYGNDLLRHFAFDVCGCTGDWSMENFIDMEVAKIREQVGDKKVLLGLSGGVDSSVVGV LLQKAIGDQLTCIFVDHGLLRKGEAEQVMESLGGKFGLNIIKVDAKERFLSKLAGVSDPE QKRKIIGNEFVYVFDDEATKLAGEEGVSFLAQGTLYTDVIESGTETAQTIKSHHNVGGLP EDMQFELIEPLNTLFKDEVRALGTELGMPDAIVWRQPFPGPGLGIRVLGEITEDKLQIVR DSDAILREEIAAAGLDRDIWQYFTVLPGIRSVGVMGDGRTYDYTVGIRAVTSIDGMTADF ARIPWDVLQKISVRIVNEVAHVNRIVYDITSKPPATVEWE >gi|307679183|gb|GL457064.1| GENE 27 25457 - 25753 124 98 aa, chain + ## HITS:1 COG:no KEGG:EF0124 NR:ns ## KEGG: EF0124 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 94 26 119 119 101 93.0 1e-20 MSKETFLKYGFVVLFIGIFLLRAQKVISEPLSYLFSGILLLIVAYLILVKKMNFFSSLLT VTDQPFSTQQRLGQLSGLVSLLIGLLLVILSFIFFLQP >gi|307679183|gb|GL457064.1| GENE 28 25904 - 26449 730 181 aa, chain + ## HITS:1 COG:no KEGG:EF0120 NR:ns ## KEGG: EF0120 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 4 181 1 178 178 342 98.0 4e-93 MEKMYRSPYEAYPYLSSKPEDLRCDFELMTDELASMTGLLRGYVQQLDVPEQPALTEELA KICELIYHVNPTTRTKLTVTEEEIAWLLERVNAMNELTYEENRPFVLPMGTICSSYAHIL RAKAKDIVRLLYRMDYGGKKIDPQLYDLVNLLSGYFFMLALYLNQLENGEEVPFVSRNYS I >gi|307679183|gb|GL457064.1| GENE 29 26497 - 27285 870 262 aa, chain - ## HITS:1 COG:PA3578 KEGG:ns NR:ns ## COG: PA3578 COG0384 # Protein_GI_number: 15598774 # Func_class: R General function prediction only # Function: Predicted epimerase, PhzC/PhzF homolog # Organism: Pseudomonas aeruginosa # 1 260 1 260 261 236 49.0 3e-62 MSYPYYIVDAFAEEVFKGNPAAVYVLEKWLPEAVMQNIAIENNLSETAFTVKEGQSYALR WFTPEREIDLCGHATLATAFVLFNYYSVAEETLHFTSQSGPLAVTKKEEYYYLDFPYILP ERIPILPEYEAALGTKIYEAYLGRDLFFVLKDEETVAKITPDFSALKALDLGVGVIVTAS GDSVDFVSRTFFPKLRINEDPVCGSAHANLIPYWGKRLNQTTLSAYQVSPRGGFLTCEVK EDRVIIGGTAKLFAKGEAYLPV >gi|307679183|gb|GL457064.1| GENE 30 27287 - 28252 835 321 aa, chain - ## HITS:1 COG:MTH1495 KEGG:ns NR:ns ## COG: MTH1495 COG2423 # Protein_GI_number: 15679492 # Func_class: E Amino acid transport and metabolism # Function: Predicted ornithine cyclodeaminase, mu-crystallin homolog # Organism: Methanothermobacter thermautotrophicus # 55 320 65 330 339 159 33.0 1e-38 MDIISYERVIQQLSLSEAIQVMKRCFAELQKGKISQSERHVEVLPDGENQNLFALMPAYL GKNRFFGAKIITAFPENPQKNLASHLGQILLFDSSTGRPVAMMDANAITWLRTAAVSALA TDYLAAPKAKSIALIGAGQQASSHLAALQSVRAIEKVFIYDRTTERARKLIAKQQHNYPE CTFIGCSSVQEAVQEAEIICTLTSSQDAFLEEKDVLPNAHINAIGTFTPTSRELTSDLVK NSQVFVDEYAAALKESGDLLIPISEGAFSAEKIVGSLGELVTGKVKLKAEQKGRTIFDAV GLAVEDLCCAEYIYQKIQGEN >gi|307679183|gb|GL457064.1| GENE 31 28350 - 29762 1077 470 aa, chain + ## HITS:1 COG:BS_ydeF KEGG:ns NR:ns ## COG: BS_ydeF COG1167 # Protein_GI_number: 16077585 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Bacillus subtilis # 1 462 4 464 465 259 33.0 7e-69 MPINSYENYALSWRPVKERLTRPYYQSLVQQLEADILSGALQKNVKLPSQRELADYLDLN FTTIGQAYKHAMEKGLLYTNIGSGTFVSPNAFHSITISTNQVADHLIDLGLVSSFDMCNQ RILPFIESVSKNAALNSLLNYRDPLGTHFQRATAAEWLQTQGVRTNAEEVAIVSGVQNGL AVTLAAAFSPGQRIAVDRYTYSNFIELAQLYHLEIVPIGYDSEGMDPEHLLQECKKKKIH GIFLMPACNNPIGFQMSSARRMTLAEIIQQEHLWVIEDDIHSFLTTYAQQAVLPTFQELL PQQTIYLAGMTKFVCTGLRIAYLVFPPLLRQEIERAIFNINVKTSGFDAEIVTQVLRSPV AEELVIEKLALTKQANDLFDTIFGLARPSNPLPYYRTIPLSTEKTAPQIEQEFLQNGVRL FHSSRFTVQNQPDAFLRISLASNQLEVLAKGLTIIQELLPTLNEKKGHSL >gi|307679183|gb|GL457064.1| GENE 32 29759 - 30202 363 147 aa, chain + ## HITS:1 COG:lin1093 KEGG:ns NR:ns ## COG: lin1093 COG4815 # Protein_GI_number: 16800162 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 6 145 6 145 151 141 48.0 3e-34 MNSLPILEKAVGAITLLSEEKQNAEYEGFLCQVNESQQLIRSRLAKKTPKKEGYFAAFWE KNQQNQNEAFDATEAPEMLAIVIADQEKQGLFLLPKECLIQQKILKTNQQKGKMAARFYP SWCQNLNQTAKKTQKWQLAYFTDLSKY >gi|307679183|gb|GL457064.1| GENE 33 30283 - 31551 1236 422 aa, chain - ## HITS:1 COG:PH0854 KEGG:ns NR:ns ## COG: PH0854 COG0251 # Protein_GI_number: 14590714 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Pyrococcus horikoshii # 297 412 18 134 137 103 45.0 8e-22 MSNENIVLARNTERAPKHPLAAQTVAFSHYNHLSAQLPIEPTSGQLVEGGIRSQATQCLK NIQAVVESINHVMSDIVRMTIFVKDMRDAAAVEEVYVAFFTHYYPAKTVVAVTDLPLGAS VQMEALVSNGEGTIPNAPQAGDLIKLTNQTIQAPIDALASQTVAFSHYNNLSAQLPIDPQ TGRVVAGCVKTQTKQCLKNIKAILTSIDVPFDDIVKINIYLKDLSKLEAVNQVYAAFFPD SGIARTVNYMPARTVIAVADLPMGAAVQVEAVVSHGDGTPPQAIEDRHGLIIEANNTEHA PKCPFSTQTVAFSHYNHLSAQLPLDPKTNALVAGGIKEQTTQCLENIKAIIESVDHSLAD LVKVNIFVKEIEELAAVDDVYQTYFPEGTPARRVIGVTDLPKGAQIQIEAIAGNAEGTPP IG >gi|307679183|gb|GL457064.1| GENE 34 31836 - 34322 2432 828 aa, chain - ## HITS:1 COG:SP0057_2 KEGG:ns NR:ns ## COG: SP0057_2 COG3525 # Protein_GI_number: 15900002 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetyl-beta-hexosaminidase # Organism: Streptococcus pneumoniae TIGR4 # 485 824 2 359 782 360 52.0 7e-99 MVFKVGNNLSTRKGENRETIVSWLGLSLLVGLAFILFSLFHQPMISQANEPTQEKHFMVY YRAWRDKTMQGVNTTLPDENWLTMHDIPYGIDIVNVFSYVPKGQEALAQPFYDTLKNEYA PALHARGVRLVRGIDYSELLKVPYAGTTPTEAEFDAYAKELLTKFVDDLGIDGLDIDMET RPSEKDIVLSNGVIRALSKYIGPKSGTDRPFLYDTNAEYLPPLQDVSDCFDFLAYQQYGS DDQRTQRALNNLSPVLNGERFVPGLTFPEEQDRNRWYDTKEPYMESNMYKVARYSYENNL GGMFLYALDRDGRTYNEDDLNQIKPSNLLWTKTAIAESKGVSLAEMKAAAQHYLKRISYA NTDLEAQNKAAEAVTQATTLYDVNKAILGGDYGQGISNTYDAELEKGLLAIDLTTLYRAL DQAVTAIEKAESYTPETIQALQTTKETVATELAGKTYTAAQVTTWQTEVQTALDNLKEKQ TQPLKSVFSIDAGRKYFSVEQLEELVAKASQNGYTDVQLILGNDGLRFILDDMSVNVNGK KYNHNRVSKAIQRGNNAYYNDPNGNALTQKEMDRLLAFAKARNINIIPVINSPGHMDALL VAMEKLAIKNPAFDGSKRTVDLGNQKAVNFTKAIISKYVAYFSAHSEIFNFGGDEYANDV DTGGWAKLQSSGRYKDFVAYANDLAKIIKDAGMQPMSFNDGIYYNSDDSFGTFDPEIIIS YWTAGWSGYDVAKPEYFVQKGHKIFNTNDAWYWVAGNVDSGIYQYDDALANMSKKAFTDV PAGSPNLPIIGSIQCVWYDDPRRDYDFERIYTLMDTFSENYREYMVVK >gi|307679183|gb|GL457064.1| GENE 35 34554 - 35570 1168 338 aa, chain - ## HITS:1 COG:AGpA656 KEGG:ns NR:ns ## COG: AGpA656 COG0604 # Protein_GI_number: 16119675 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 2 333 26 358 359 298 48.0 9e-81 MMKAALIHKYGQKELSIEEVPLPTIHDNDVLVKIIAASINPIDLKTKDGKVKMLLNYQMP LILGSDFAGIVVSVGKNVQNFRMGDAVYGRVPKNRVGTFAEYIAVDQAAVAMKPKNLTFE EAAAIPLVGLTSYQALHDIMNVQPGQKVLIQAGSGGIGTIAIQLAKLAGAYVATTTSSKN KEWVQALGADEVIDYRTQNFEEVLSDYDYVFDTMGGTILEKAFSVVKPQGKVVTLSGIPN ERFAKEYGLPLWKQWAFKIATRKIHRLEQATDVSYHFLFMRPDGEQLALLTEFIEQGKLQ PIIDRVVPFSQIQEAVDYSLTGRAQGKIVVKIADVDHD >gi|307679183|gb|GL457064.1| GENE 36 35750 - 36085 440 111 aa, chain + ## HITS:1 COG:no KEGG:EF0110 NR:ns ## KEGG: EF0110 # Name: not_defined # Def: ArsR family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 111 1 111 111 187 100.0 1e-46 MKELEEIQTEFTALSDFLIALGDEKRQAIIIALLEDQACVGRRVTELTEATQLSRPAVSH HLKILKQAKLIDCRSEGTKNYYSLSHDTTKIEQLQQLLTHITSIMPGRKQA >gi|307679183|gb|GL457064.1| GENE 37 36082 - 36762 634 226 aa, chain + ## HITS:1 COG:BMEII1016 KEGG:ns NR:ns ## COG: BMEII1016 COG0693 # Protein_GI_number: 17989361 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Brucella melitensis # 2 221 3 224 235 180 43.0 2e-45 MKKILVVLTNVSRYHGTEEPTGLWLGEATEFVEEVTKAGFSVDYVSPQGGYVPLDPRSMK YVDSSIMAVYESADFQERALAHSLSLEEIEPDEYAAIYFTGGHGVMWDFPDNPQLQAITR SLYEQGKYLTSVCHGIAGLLNVKDASGNYLIADKTITGFTTAEEILAMKKAVVPFLNETI AKEHGATFAKKRPYKEFAYQDGRIITGQNPFSVRAVARLLIQQLSK >gi|307679183|gb|GL457064.1| GENE 38 36853 - 38304 1465 483 aa, chain - ## HITS:1 COG:SPy1543 KEGG:ns NR:ns ## COG: SPy1543 COG1288 # Protein_GI_number: 15675441 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 1 462 1 478 497 285 37.0 1e-76 MAEKKKKNKKQLSSFSILFIILIVLGIVTVLLNGQPFTPREIDGKMVDHVVGAKLSDIIM APFNGFKDAIEINIFILVLGGFLNIVTQTGALEAGIQSVVKKLKGNELKIIPILMILFSI GGSTYGMAEETIPFYGLLSATMVAAGFDTFVAVGTVLLGAGSGVIGSTVNPFSTGVAMDA LRGIGIQPNTGIILIVGAILWAASTSYSIFIVMRYAKKVKADKGSTILSLQEQEDMEKTY GQAASKEMPFTNRHKKILMVFAFCFVIMIVSLIPWNDFGVTIFKGWTSVLTGNSFGDWYF GDLAMWFFLLGIIAALIGRFTEKETIEAFIDGAKDMLSVVLIIVVARGASVLMSKTYLDS FILDKAAGLLQGLSPVLFVIGAFVLYLGLSFLIPSTSGLAYVSIPVMGALAKNIGLSPEV MVMIFASGCGLINLITPTSGVVMGGLEISKVQYATWTKFMAKPMIVLGLINLIILIGAML LFS >gi|307679183|gb|GL457064.1| GENE 39 38352 - 39041 450 229 aa, chain - ## HITS:1 COG:SPy1548 KEGG:ns NR:ns ## COG: SPy1548 COG0664 # Protein_GI_number: 15675445 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Streptococcus pyogenes M1 GAS # 12 224 15 222 226 139 36.0 5e-33 MIEKIITKNNQDFQYFSESELTELRNESFVRSYKKGQVLFYPGDPRNHLILLVSGVIKIE KNDRSGNFSYLHFMKKQALFPRIGLFQDEVHYDSAIAYTDIEVVFVPVKLFERFLQNNPQ QLIHWIQEQSVLLKESMIKIQKGTTNDACERIVTSLAMLLNDLGERIDNRERVAITCPIT INDIARMSGTTRETASSVMKKLVQMNRISYSHKFLTFLDTPFFIDRLSN >gi|307679183|gb|GL457064.1| GENE 40 39069 - 40001 1189 310 aa, chain - ## HITS:1 COG:SPy1541 KEGG:ns NR:ns ## COG: SPy1541 COG0549 # Protein_GI_number: 15675439 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Streptococcus pyogenes M1 GAS # 3 295 4 301 316 350 66.0 1e-96 MGKKMVVALGGNAILSNDASAQAQQQALVQTSAYLVHLIKQGHRLIVSHGNGPQVGNLLL QQQAADSEKNPAMPLDTCVAMTQGSIGYWLSNALNQELNKAGIKKQVATVLTQVVVDPAD EAFKNPTKPIGPFLKEAEAKEAMQAGAIFKEDAGRGWRKVVPSPKPIDIHEAETINTLIK NDIITISCGGGGIPVVGQELKGVEAVIDKDFASEKLAELVDADALVILTGVDYVCINYGK PDEKQLTNVTVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITSLENLGSMSG DEIVGTVVTK >gi|307679183|gb|GL457064.1| GENE 41 40107 - 41126 1405 339 aa, chain - ## HITS:1 COG:SPy1544 KEGG:ns NR:ns ## COG: SPy1544 COG0078 # Protein_GI_number: 15675442 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Streptococcus pyogenes M1 GAS # 1 339 1 337 337 551 77.0 1e-156 MNSVFQGRSLLAEKDFTRAELEYLVDFSIHLKELKKKGIPHHYLEGKNIALLFEKTSTRT RSAFTSAAIDLGAHPEYLGANDIQLGKKESVEDTAIVLGSMFDGIEFRGFSQEVVEDLAK YSGVPVWNGLTDQWHPTQMIADFMTVKENFGRLEGITLVYVGDGRNNMANSLLVTGAILG VNVRICAPKELFPSDEVVNYAKEFAKESGAELMITDDVAKGVKGANVLYTDVWVSMGEED KFEERVNLLKPYQINMAMLEKTENMDGDLIVLHCLPAFHDTKTQYGEMVAEKFGITEMEI TDEVFRSKYGRQFEEAENRMHSIKAIMAATLGNLFIPRV >gi|307679183|gb|GL457064.1| GENE 42 41155 - 42381 1429 408 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149020061|ref|ZP_01835035.1| 50S ribosomal protein L33 [Streptococcus pneumoniae SP23-BS72] # 2 408 3 409 409 555 67 1e-157 MSHPINVFSEIGKLKTVMLHRPGKELENLMPDYLERLLFDDIPFLEKAQAEHDAFAELLR SKDIEVVYLEDLAAEALINEEVRRQFIDQFLEEANIRSESAKEKVRELMLEIDDNEELIQ KAIAGIQKQELPKYEQEFLTDMVEADYPFIIDPMPNLYFTRDNFATMGHGISLNHMYSVT RQRETIFGQYIFDYHPRFAGKEVPRVYDRSESTRIEGGDELILSKEVVAIGISQRTDAAS IEKIARNIFEQKLGFKNILAFDIGEHRKFMHLDTVFTMIDYDKFTIHPEIEGGLVVYSIT EKADGDIQITKEKDTLDNILCKYLHLDNVQLIRCGAGNLTAAAREQWNDGSNTLAIAPGE VVVYDRNTITNKALEEAGVKLNYIPGSELVRGRGGPRCMSMPLYREDL >gi|307679183|gb|GL457064.1| GENE 43 42678 - 43166 479 162 aa, chain - ## HITS:1 COG:SPy2150 KEGG:ns NR:ns ## COG: SPy2150 COG1438 # Protein_GI_number: 15675892 # Func_class: K Transcription # Function: Arginine repressor # Organism: Streptococcus pyogenes M1 GAS # 1 146 1 139 145 77 34.0 1e-14 MNKQTRQSLIKEIIQTTVIHSQNELLRELKKREINVAQATISRDLWELKVVKALDESGEM RLTIFEQFTSLEERKKEQLIQAIREVVTKVERVAFLLVVHTLPDNATLFSAVLDEVSLCE KKCSVAGFDTVIIVSSSEEKAQELEQYFQQFIQPTPLSKSNA >gi|307679183|gb|GL457064.1| GENE 44 43409 - 43888 418 159 aa, chain + ## HITS:1 COG:lin1404 KEGG:ns NR:ns ## COG: lin1404 COG1438 # Protein_GI_number: 16800472 # Func_class: K Transcription # Function: Arginine repressor # Organism: Listeria innocua # 1 152 1 145 149 96 35.0 2e-20 MNRLKRQTMIKRLVTENEIHTQSELLALLEKENIHTTQATISRDIRELNLNKVDNGQGEA YYRILNNSALRPKYKTDEERLVDIIIETGVSLTQIEFTNLLTVLPGNGQAIGVLIDRIRI HNPHILGCIAGDDTILILSKNKEDALEVNNYFQQYLYHP >gi|307679183|gb|GL457064.1| GENE 45 44055 - 44969 767 304 aa, chain + ## HITS:1 COG:lin1226 KEGG:ns NR:ns ## COG: lin1226 COG2267 # Protein_GI_number: 16800295 # Func_class: I Lipid transport and metabolism # Function: Lysophospholipase # Organism: Listeria innocua # 1 299 1 299 306 204 38.0 2e-52 MTEQFILTSNDQQTQLNVRHWPCPSPKAVVQLIHGMAEHIQRYDEFARFLNQLGFAVIGH DHLGHGESVQPSAPIYGFFGEQGPENVVTDIRQVKQWAVNRYPQLPYFMMGHSMGSFALR NYLQDYPVTMQGVIFMGTGTSPLPLTAALPFIKKMAEKQPKKPAPFIDKLAFGSFSKKFP EASSFNWLSKNQANVADYENDPLMGFVFTNNGFATLFSLVKRANQRNWYQAIPKELPILI ISGAEDPVGDFSKGPAKIQKQLKHAGFQHVTLRLFPTLRHEILLETEKATVFQEIGHWLT DLTN >gi|307679183|gb|GL457064.1| GENE 46 45006 - 46277 1407 423 aa, chain - ## HITS:1 COG:SPy1742 KEGG:ns NR:ns ## COG: SPy1742 COG0172 # Protein_GI_number: 15675591 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 422 1 422 425 609 70.0 1e-174 MLDMKKIRQNVEVVQKKLKTRGVDEEVLLRFLALDEERRALLVKVEELKKHRNQVSGEIA QLKRAQKDASQQLLNMQEVSEQIKVLDQEVVHLQEQCTAIAERLPNLPHESVPVGADEAA NVEVRRWSTPKTFSFEPKPHWEIGEALGILDFERGAKVSGSRFLYYKGLGARLERAVYNF MLDQHVNEHGYTEVIPPYLVNSKAMFGTGQFPKFKEDVFQVAESDLTLIPTAEVPLTNYY NNEILEAQELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKFSDAEHSYEELE KMTNNAGDILEKLGLPYRVITLSTGDMGFSAAKTYDLEVWIPAQKTYREISSCSNCEDFQ ARRALIRYRDKTGHVQYAHTLNGSGLAVGRTVAAILENYQNEDGTVTIPEVLRPYMGGLT KID >gi|307679183|gb|GL457064.1| GENE 47 46304 - 47197 1284 297 aa, chain - ## HITS:1 COG:SA2318 KEGG:ns NR:ns ## COG: SA2318 COG1760 # Protein_GI_number: 15928109 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Staphylococcus aureus N315 # 1 289 1 289 299 304 62.0 1e-82 MYLSIEEFIDKAEKTGKKISDLMIEQEMERSQKSYEEIWTQMGQNLDVMDAAVKRSQEGA GVFSPTGLTGGDAARLKKYRAAGKTLSGDLMMSAVQAALGTNEVNAAMGVVCATPTAGAS GTLPGVLTAIKNTLNLTRDQQIRFLFTSSLFGMVTANNAMIAGAVGGCQAEVGSASAMAA AAAVEAAGGTPRQSSEAFAMALGNLLGLVCDPVAGLVEIPCVKRNTVGAGNALIAADMAL AGIVNKIPADEVVEAMNKVGRQLPRELRETGLGGLAGTATGQRMKNEIFEKVKFTIV >gi|307679183|gb|GL457064.1| GENE 48 47212 - 47919 874 235 aa, chain - ## HITS:1 COG:BH2497 KEGG:ns NR:ns ## COG: BH2497 COG1760 # Protein_GI_number: 15615060 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Bacillus halodurans # 17 212 1 195 220 164 44.0 1e-40 MNTAMAINKPKKVNKVMNYKSCFDIIGPIMIGPSSSHTAGALAIGLAARKLFGGTPEKIV IKYYESFADTHKGHGTDFAIIGGILGLAADDANVTQSIELAEEQGIEIQFLEMSEESPVK HANTACVTLSDATHEIHLTGISVGGGTIEVKYIELDGFNVQLHGPLPILLVINQEEQAMQ AFKDTLQKNNIQVNAVSRYVEGNQILFIFDLDSAPISSVKEQLFSLDDTSKIILL >gi|307679183|gb|GL457064.1| GENE 49 47894 - 49000 1510 368 aa, chain - ## HITS:1 COG:SA2320 KEGG:ns NR:ns ## COG: SA2320 COG1299 # Protein_GI_number: 15928111 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Staphylococcus aureus N315 # 1 333 1 333 347 275 49.0 9e-74 MKTLSGILMLVLVLCGMSLFSFKAPRGKKSLSALSGAACATFLPEAFLRYAVGGVFHLDY VSQIGETMGSLGGLAAGALVPLAFGISPVFSIILGLSLIKVSLLPAFITAYLLSFVVEQM QKRIPEGIDLLVVILVIPVAASLVAGFIQPVVLGVLEVIGGTILSAVDGNPYVMGAILGA IIPIVGMTPLSSMVLTALIGLTGVPMAVGALTCYGSSIVNAALFKKLKLGTASTPLAVAI EPLTQVDIISSNPIPIYATNLFSGMVSGIVVTFFGLKVPVTGMATPWAGLLVTLGNNAIQ TTLLAVAIITVVSLMFGFLGALVFKRYRIEAVDNTPEFEGTTEVTSEKEKEAVKTKGGVT YEHSYGHQ >gi|307679183|gb|GL457064.1| GENE 50 49257 - 49937 667 226 aa, chain + ## HITS:1 COG:VC0355 KEGG:ns NR:ns ## COG: VC0355 COG2964 # Protein_GI_number: 15640382 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Vibrio cholerae # 7 225 23 237 240 172 38.0 6e-43 MESYLRLSEVDKQILHSHALMLDGLGNFFGSTHEVILHSLENLESSAIKVINGHFSNRKE GAPITDMALKMLSQVESEHDYAVKPYYNKNQKGVILKSSTIPVIGENDRIIGLICINMHL EMPLIDYLQDLLPSGQQNDMSQELKNSEHFSDNIDELITTSLTKVKQAVESDPNVSHLNQ NKEIVIRLYDQGIFNLKDSVIKIADRLGISKNTIYLHIRNHKKEEA >gi|307679183|gb|GL457064.1| GENE 51 49996 - 50781 757 261 aa, chain - ## HITS:1 COG:no KEGG:EF0095 NR:ns ## KEGG: EF0095 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 261 1 261 261 384 98.0 1e-105 MKKIALFSILTFSVLSLSLAGCGNKKTASTNDSKQKQETKKATQKSSSQQEMKSSHSSVA GQNSNVTGENPSENATQTSAGTDETNEVPQNQAPDTNITITNVVFNPERNEINGTTLPNA TITATVVGDASAQAGVFYADANGNFTVISPRAGATTQLIATVDQRNSVPVQIDIPSSGQE AALSFSNITIDPKQGTISGKTAPNATILVSRADDARVILASFTADAQGNFTASNLVPGTK NRLDVTLNGEIGTPYLFDLPN >gi|307679183|gb|GL457064.1| GENE 52 50937 - 51698 921 253 aa, chain - ## HITS:1 COG:L195318 KEGG:ns NR:ns ## COG: L195318 COG2116 # Protein_GI_number: 15672950 # Func_class: P Inorganic ion transport and metabolism # Function: Formate/nitrite family of transporters # Organism: Lactococcus lactis # 1 253 1 253 264 317 65.0 1e-86 MYTPDEILSISIENGQKKIQKPLVAKLILGFIGGAMISLGYLAYVRVSASIPADLASVQA LVGAAVFPIGLIVILMAGGELITGNMMAVSTAWFAKKVSFRELLVNWVTITLANMVGALF VAYFFGHYLGLTSSGAYLNQVLSLAEHKVAATWLQAIISGIGCNWFVGLALWLCYGAKDA AGKLLGIWFPVMIFVAIGFQHSVANAFIIPAAIFEGGVQWGDFFRNFIFVYLGNIIGGAI FVSGFYYLSYRKH >gi|307679183|gb|GL457064.1| GENE 53 51875 - 54727 2224 950 aa, chain - ## HITS:1 COG:no KEGG:EF0093 NR:ns ## KEGG: EF0093 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: E.faecalis # Pathway: not_defined # 1 736 1 736 1055 1301 97.0 0 MKKTILILLFGLLTVVGLPMVTEAAEPVDATDATIFGAQAMVPNSTEDQTEKLQTLLSQT AKEGRALFLPQGSYALSKDITISSNYQLIGDTTGATILHNATGTPIQLKDTTYGTKTNVR LQNIAFDGINVTLKLTNQLTLANNIFYNPLKGFVVNLNADIGVKISGNIFMRDTAHMQPK IDFNRAIYIGGYSTPSRFQYMSDVDIVDNLFGLKVTELDAIKSTSRSDLAATITRLQTAI EAGAISVPNEQNYLSTGVNSFNMLKDVTVQHNFFYSPYDNEDLNGLVGDHAIYFRGAQNI TVVGNHLRGLQNGPAGGFKFKSGRNITIMNNYLRNTGLIMYGTPEIGLAETQAEGAISEL SNWLVANNIFDWKYWDNQYAIGMEYNRHTGNNNVFNGVFINNQFVNYHNIPQNRRRELLI ASGGGFRPETSFVKDNTRDDGLKNGQLLVENWTEADYRLMPATWESLISPTLYEQYKNTP IPVRNTLATPVATTIVQGQSIDPQQLVANTNDADEAVPAAKIVNPEVLNEIGQQKVTVQL TYETGSLVTVNVPVTVEAPAKKLDLSQLQTVYASIGEANQYTVYSWQLFTAIGPKTIVPS YYQQATQLLAEGQVSGDKTQEQVDQLTSNLQSAMKVLVKKADITLERAEAENELASVHKL DESVYTTDSWQAMQEALIDTTTGEGSSKQLQQLLAWSDEELLEPILGGFKTPADAQKRIN QLTQTIKTALLLLVEKSTETTSNTSESSTSSTTSESSSTSESSTSSTTNESSSTSESSMP STTSESSSTSESSTSSTTSETSNTNESNTPSTTSKTSSTSESSASSTTSATNSTSESSTP STLNENSQSKGQNSVIYAVESNQDPNDAQSNSKPSAKASQTKESVAENQATKQIQTNKES SGTVKKADNTTKIAKKKFPKTGEQSSAVGSFLGLSFLSLAIATYCFKVKR >gi|307679183|gb|GL457064.1| GENE 54 54742 - 54981 369 79 aa, chain - ## HITS:1 COG:no KEGG:EF0092 NR:ns ## KEGG: EF0092 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 79 1 79 79 114 97.0 1e-24 MKKRMEQIEEILSCEENSAGVRLKELVEALELEVTNQNLLKVTSILHMNPKFKKIYAYED SRVITLYQLLQNKPLEVTE >gi|307679183|gb|GL457064.1| GENE 55 55326 - 56831 1335 501 aa, chain - ## HITS:1 COG:no KEGG:EF0091 NR:ns ## KEGG: EF0091 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 501 1 501 501 925 98.0 0 MKWDEYVDIFDTDVVSKIIILRNLPINEGWIDINELAEELQLNKKSVKKYVELLKDDITY YAVDNDASLAFEKGHGYRLNLASSQAFQKLYTAIFRDSLTYQVMEDLFWGRFNGIVPATT KYHTSDATIRRLLKGFTEILAPLGLVINKSTWKIEGNEAYLRHFAYTIFMDLIRDTWPFD YIQETEVAQTVQKMMAFFNVEVAETVIRRVKYMVAISKVRSAQGAEYRPSAEQETYLEGN KHYQAFIEEMTATTLFLNKNDLTFVYFFLLANDQFYQDEATAQAILAHFDESEAPVYMLT HLVQHFLLEEIHMTPQLEKIRPQIFYYLFATHLFAELYYVQNVKMYNVFWNKVKEKYPVL LEELSQGLNQLYEQTGNELFTNKEFLALRYSSVLALSNDLIHREQKIVLGLKSGLPVLEE ERVKLSIENNFRRFYALEVLRYSEASKEEWQNIDLLLVTSLADVETGHPEIFLLSSELTF EQYNRLNQKIVKINEKRTTSL >gi|307679183|gb|GL457064.1| GENE 56 56913 - 57824 1080 303 aa, chain - ## HITS:1 COG:SPy1158 KEGG:ns NR:ns ## COG: SPy1158 COG1597 # Protein_GI_number: 15675134 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Streptococcus pyogenes M1 GAS # 1 295 1 300 303 186 32.0 5e-47 MKKMMVLYNETSGSSESKEIAERFKKAAEARGEAVILQPSNPDIDPEEMRKNAKENQVGV LVVIGGDGTIHHAVQNFKDTIRDYQIGIIPGGTVNNFARVLSIPLKEEDAFETNLAGQTT PVDFGMVNQDVMISTLTIGLLADTAANVTQQEKQKYGPLAFTKQFFRLLMKKKKYKLKID GDERRWHGKAQLLTMTMTNSAGGFTNFDANATPDDGEVHIIILPKLVFYKFVYYLPKIIR GQLNEIPGVVYFSGSQFKISGEKDKKVQTRTDGDPTDDLPIKVTVEAGGLNVFVPETSTS KKE >gi|307679183|gb|GL457064.1| GENE 57 58103 - 60022 2003 639 aa, chain - ## HITS:1 COG:L148778 KEGG:ns NR:ns ## COG: L148778 COG4932 # Protein_GI_number: 15672133 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Lactococcus lactis # 3 638 1381 1982 1983 428 40.0 1e-119 MNGHLLSGATFKVLDAKGQTIQTGLTTNSQGKIIAEHLAPGKYRFVETKAPTGYLLNTMP VPFEIAEKNAGKPAVVVASDNFVNYKGAFQIVKTNSADQPLAGAVFELYDHNKQSLGITA TSGKDGKIIFRDLAPGTYYYKEIKAPKLPDGADYIIYPELVKVEIRGDFKGDPEIFQLGA FANFKGRAVFKKIDANANPLPGTIFKLYRIENGEKIFEREVTSEKDGSLAMEDLGAGSYE LDEMDATDGYIVNKQPIYFVVKKNSNDKQPLDELEFVNYQAEVTGRKVNEQGQTLAGAVF AIYNADNQNQPQGSPITFLNRAGEKVSEITTDKTGEIYAKGLNEGHYVLVETKAPTGYLL DTTPHPFDVTAQLGKEQPIALGDLINYQGTAQLTKENETGEALAGAVFKVIDETGQTVAG QTNLMSDKQGKVIAKNLAPGTYRFVETQAPTGYLLNETPSASFTIAKDNQGKPATVVLKA PFINYQGAAKLVKIDQQKNALVGAEFKVTDAETGQTVARSLRSDNQGLVQVNHLQPGKYT FVETKAPDGYQLSKQAVAFTIAATAKDKPELVDAGTFVNEKQPVSKKTKPNQPTTKQAAR ETGWLGLPKTNTQVNYFFVFIGLLLVGLASWLFYKKSKK >gi|307679183|gb|GL457064.1| GENE 58 60139 - 64200 4111 1353 aa, chain - ## HITS:1 COG:L148778 KEGG:ns NR:ns ## COG: L148778 COG4932 # Protein_GI_number: 15672133 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Lactococcus lactis # 167 1351 152 1336 1983 685 37.0 0 MRKNGPMVNRWLYGLMCLLLVLNYGTPLMALAEDVNSDGQLTLGEVKQTSQQEMTLALQG KAQPVTQEVVVHYSANVSIKAAHWAAPNNTRKIQVDDQKKQIQIELNQQALADTLVLTLN PTATEDVTFSYGQQQRALTLNTGTDPTESTAITSSPAASANEGSTEEASTNSSVPRSSEE TVASTTKAIESKTTESTTVKPRVAGPTDISDYFTGDETTIIDNFEDPIYLNPDGTPATPP YKEDVTIHWNFNWSIPEDVREQMKAGDYFEFQLPGNLKPNKPGSGDLVDAEGNVYGTYTI SEDGTVRFTFNERITSESDIHGDFSLDTHLNDSDGRGPGDWVIDIPTQEDLPPVVIPIVP DTEQQIDKQGHFDRTPNPSAITWTVDINQAMKDQTNPTVTETWPTGNTFKSVKVYELVMN LDGTIKEVGRELSPDEYTVDKNGNVTIKGDTNKAYRLEYQTTIDESVIPDGGGDVPFKNH ATLTSDNNPNGLDAEATVTATYGKMLDKRNIDYDEANQEFTWEINYNYGEQTIPKDQAVI TDTMGDNLTFEPDSLHLYSVTFDDKGNEVVGAELVEGKDYKVVIKGDGSFAIDFLHDVNG AVKIDYKTKVDGIVEGDVAVNNRVDVGTGQHSEGDGTASQQNIIKNTGAVDYQNSTIGWT LAVNQNNYLMENAVITDTYEPVPGLTMVPNSLVVKDTTTGAQLTLGKDFMVEITRNAEGE TGFKVSFIGAYAKTSDAFHITYTTFFDVTELDANNPALDHYRNTAAIDWTDEAGNNHHSE DSKPFKPLPAFDLNAQKSGVYNAVTKEITWTLAVNLSNNRLVDAFLTDPILANQTYLAGS LKVYEGNTKPDGSVEKVKPAQPLTDITMEEPSEKNQNTWRVDFPNDSRTYVIEFKTSVDE KVIEGSASYDNTASYTNQGSSRDVTGKVSIQHGGESVKKGGEYHKDDPDHVYWHVMINGA QSVLDDVVITDTPSPNQVLDPESLVIYGTNVTEDGTITPDKSVILEEGKDYTLEVTTDNE TGQQKIVVKMAHIEAPYYMEYRSLVTSSAAGSTDTVSNQVSITGNGSEVVHGDDNGDVVV DIDHSGGHATGTKGKIQLKKTAMDGTTILAGAHFQIWDQAKTQVLREGTVDATGVITFGG LPQGQYILVETKAPEGYTVSDELAKGQVITIDEETSADGAQPTIIKNNVNKVILEKTDEK GKKLVNARFKLEHAVTTPFTHWEEVPLAPDRTNANGQLEVDSLKPGLYQFTEIEAPTGYL LDTTPKRFIVTQNTSGQIRDVHVKMLNYQGSAELIKKDQAGNPLAGAEFSVLDTTGQAVR EHLVSDANGKVTVTDLAPGKYQFVETKRQQGTF >gi|307679183|gb|GL457064.1| GENE 59 64911 - 66398 1185 495 aa, chain + ## HITS:1 COG:no KEGG:EF0086 NR:ns ## KEGG: EF0086 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 495 1 495 495 916 100.0 0 MYNLLTKQEIQLLSLIEYLYDSKEKVPMQVLRRKYEFSHYNINNLLNQLTLLISRVNTHE NVHIRIINNQQSIELVADENIPIELMKEAVVRGSLTYMLALDLLLKRYTSAKDFCEEHFI NFSIFKQVSDRLNNHLARFNCYLNLKRREKICGNEKDFRSFFYSLFFISGTSLVPFLSKT NQAQLQNFIEIIKNRYPYFTYTDLRKLKLIMSIGLLRYQSGFTITNYPEVAAINLAFPYS EFQLLVNDCFIDEQKEPDTWQAEIHFYYDFFSTLTMYSLVQMETINFANLAIMGMDNSPH ATWIFEKCTQLQLDLSAIEVVFLLVNLSNASERLIHFPVEEELSYEVANVSLYEKQYPNV SRTTNYFLKRLPFDKQHPLDALFKETIFLIIRSVLLNKQIPVKILLHSSINQIQENWLAK EINNYCDVPLKFVNHIQEVPDLVITDKNNPLFHASKTFYWHPVPYLDEYYNLKQVVRKIY FAKLRGENSLEGIGC >gi|307679183|gb|GL457064.1| GENE 60 66392 - 67876 1054 494 aa, chain + ## HITS:1 COG:no KEGG:EF0085 NR:ns ## KEGG: EF0085 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 360 1 360 367 613 99.0 1e-174 MLTGLLDVPYRKSFALLEELLERREAEEQTLAISTLATQLKMQQNTILQSVALLQTEIEK NGWENLFSLSANAKEITFWFAPYFQLSFLMPYFVKKSFAYQVLTYAFNHNAIDSKHFEKV LEISSSTFTRKIGQLNQWLQKYQIEINLKRTNVLVGKEKDIRIFFMMLFWNNYSEGDWPL YTITKKEVHSLFRRLKHSVSFNTTQDFTKDLIFSAVILAHWKEGFFIKETFVEEEAIVNP FVNLSEFELFFKEEALHQVPTKFIQKEGLFAFFLLTISVSYATQDVLEIPAARMHMVQLL GSPIKEIIYQLTSFYQIKLTFHEYLYLYTSIQNLSVFFKTFVTIANPFVQESFLKEALQK NPSLYKDVKRLTIEMLPTLIGNEKLLVDCLFILFCTLKTKSLPPIRVLVRTNQSNLILDT LYEKLSKAVDKKLIFVASPEKPFDVIITDIFSEVSVKSTVPTYYVDFSASIGELAQSLEN LNTQIVTKQSPRHF >gi|307679183|gb|GL457064.1| GENE 61 68032 - 68211 312 59 aa, chain - ## HITS:1 COG:no KEGG:EF0083 NR:ns ## KEGG: EF0083 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 59 1 59 59 77 100.0 2e-13 MPNDERILNVLQQTLTEIQRMNTRLAKIETELADVDQHHATLDHYLQELELVTENNNVM >gi|307679183|gb|GL457064.1| GENE 62 68232 - 69467 1448 411 aa, chain - ## HITS:1 COG:lin1217 KEGG:ns NR:ns ## COG: lin1217 COG0477 # Protein_GI_number: 16800286 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 8 391 4 386 401 467 67.0 1e-131 MTEQTPTKLLNKGFISITVINFIVYLVYYLLMVIIAVIAQDSLHATLGQAGLASGIYIIG TLLARLFMGKLLELIGRKQVLRYGALFYLLTTVAYMYMPSMGILYLVRFLNGFGYGTVST ATNAIVTAYIPKNKKGEGINYYGLSTSLAAGIGPFIGMLLLNVSNFHVIINFSIILILLT TIACFIFPVKNIELTPEHREALSKWNFDSFVEKKVLFITFIAFLMGLAYSSVLSFLSSYV KVIDLVDVSTFFFIVYAVVITLTRPSTGRIFDVKGERYVMYPSYIFLTLGLFLLSMTTSG WMLLVSGGLIGLGYGTFMSNGQAVCLQESPSPHRIGIALSTYFIGLDLGLGVGPYVLGEL RNFMSFQQMYFLAGCIPIVCTILYMVFHKAKNDAKDLSLETIEEIEHGSEL >gi|307679183|gb|GL457064.1| GENE 63 69834 - 70076 454 80 aa, chain - ## HITS:1 COG:SPy1265 KEGG:ns NR:ns ## COG: SPy1265 COG2261 # Protein_GI_number: 15675224 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pyogenes M1 GAS # 1 79 1 79 82 68 69.0 3e-12 MGFIWALIVGGVIGAIAGAITKKGSSMGIIANIIAGLVGSTIGQAILGTWGPSLAGMAIV PSIIGAVILVAIVSWILGRK >gi|307679183|gb|GL457064.1| GENE 64 70100 - 70660 1010 186 aa, chain - ## HITS:1 COG:SP1804 KEGG:ns NR:ns ## COG: SP1804 COG1302 # Protein_GI_number: 15901633 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 1 186 1 184 202 167 55.0 1e-41 MSNEKFNNVPKPAGNGPHTPEDHAIKGELTFEDKVVQKIIGLALENVDGLLTVDGGFFSN IAEKLVNTDNVTAGIDTEVGKKQVAVDMDIVVEYGKDIQDIYEKMKELISREVKKMTHLD VIEVNVNVVDIKSKEEYEEDSETVQDKVTGAAKSTGEFASEQTEKAKKAVNKGTEQVKEN MEPRVE >gi|307679183|gb|GL457064.1| GENE 65 70719 - 71231 782 170 aa, chain - ## HITS:1 COG:SP1804 KEGG:ns NR:ns ## COG: SP1804 COG1302 # Protein_GI_number: 15901633 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 9 170 23 184 202 149 51.0 2e-36 MENANVSIVKGELTFEDKVIQKIIGIALEEVDGLLTVDGGFFSNLRDKMINSEDVTTGIH TEVGKKQVAVDMDIVAEYGKDIETIYDQMKEVITREVQQMTHLEVIEVNVNVVDIKTQAE YQEESETVQDKLGNAAEATGSFMSKQTNKAKHAVTKGKTKVKENTAPRVQ >gi|307679183|gb|GL457064.1| GENE 66 71244 - 71435 339 63 aa, chain - ## HITS:1 COG:no KEGG:EF0078 NR:ns ## KEGG: EF0078 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 63 1 63 63 79 100.0 5e-14 MVEWIKQYAVPLIGGLVGLVFAILFLSIGFFKTLLVVLLTGLGIWLGLYLEQTGIVKNYF HHK >gi|307679183|gb|GL457064.1| GENE 67 71448 - 72020 662 190 aa, chain - ## HITS:1 COG:no KEGG:EF0077 NR:ns ## KEGG: EF0077 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 190 1 190 190 315 100.0 5e-85 MNKVVKILLLLGSLILMALFGAVAITTWSADTAWQPPDNVQWFLQDNEYARQAIFWVALV LLGIMLFLFLFILLFPRRKGTFELKEEQGKLVLHRKAIEGFVRSSLQDSDFLEAPTIRVK ATKRRIKVNVKGTLKRTADLIGQTEAWSKTMEERLARLVGTGHKITIDVHFEDIQSMKRP QQQQTQARVE >gi|307679183|gb|GL457064.1| GENE 68 72033 - 72926 1044 297 aa, chain - ## HITS:1 COG:BS_yhxD KEGG:ns NR:ns ## COG: BS_yhxD COG1028 # Protein_GI_number: 16078107 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Bacillus subtilis # 1 292 1 295 299 343 60.0 2e-94 MTEPNLKDPRKLFYSDGFPQQDQETPALQDKMVPKPDCGEDSYVGNHKLENRRVLITGGD SGIGRAAAIAFAREGADIALHFFPGEEKDAEEVAHYIREAGRKVVLLPADLRDKQAPEEL VAQARESLGGLDTLVLNAAQQISCAAIEELPMEQVIDTFHVNIIAMFGIVKAAVPHLPAG SSIVTTTSVQAFNPSEHLLDYAATKASIANFTVGLAKQLAPKGIRVNGVAPGPIWTPLQL DHGQPIEELPEFGQHSLLERAGQPAELAPVYVFLASNDASYVTAQVYGVTGGEAINL >gi|307679183|gb|GL457064.1| GENE 69 73201 - 73854 779 217 aa, chain + ## HITS:1 COG:lin1218 KEGG:ns NR:ns ## COG: lin1218 COG0664 # Protein_GI_number: 16800287 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Listeria innocua # 2 216 3 218 219 275 64.0 6e-74 MRNVLQDYLDEHSFRVVVKKKKNYLTYEGLQDRYAYILKSGIIKTSVISKDGREFNLRYI NNLEIVSLLRDEYSEFIDAPFNIRIESPQAELYQIDRVQFWRDINNSKDLQMYVKEYYRD RLMHSMKKMQQMLMNGKFGAVCTQIYEMYDSFGVETEEGILIDFVVTNEEIAHFCGITSA SSVNRMMQQLKELGAIELRNRKILIKDLDMIRDNIIV >gi|307679183|gb|GL457064.1| GENE 70 73897 - 74631 646 244 aa, chain - ## HITS:1 COG:no KEGG:EF0073 NR:ns ## KEGG: EF0073 # Name: not_defined # Def: Cro/CI family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 244 62 305 305 454 99.0 1e-126 MVSDTRIMASSEVKHQIECCQMGLNNTSEKKNLIHYFYQLERNPHKNALEMSIYTDIKLT FSNDWEEIPEFDETDRMVILALISSKSYYTYYDYQMVTNPAALFSENEVLQILEQMFPVK DAELRDTQTLNVAYGFYLNIITGELYKKNYAKAREYLALVSVTTIPAEIYYIHFNLRYLK NLTYYLYTGKMRYYKEVIAVIDMIESFGDVRLAEGMKKEMLQLTAGRTFNLEKGQFPLNI VTEK >gi|307679183|gb|GL457064.1| GENE 71 74621 - 74815 188 64 aa, chain - ## HITS:1 COG:no KEGG:EF0073 NR:ns ## KEGG: EF0073 # Name: not_defined # Def: Cro/CI family transcriptional regulator # Organism: E.faecalis # Pathway: not_defined # 1 61 1 61 305 115 100.0 6e-25 MDVLGALKYFRKKKKIAQKDVLPKKGKQTYRRIEIGEAKLSYEDLMTALQSLGITFNEFF FYGI >gi|307679183|gb|GL457064.1| GENE 72 74895 - 74987 80 30 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIIKILQYYNYGNNKNEYFEIFINVFADFV >gi|307679183|gb|GL457064.1| GENE 73 75363 - 77702 2497 779 aa, chain - ## HITS:1 COG:no KEGG:EF0071 NR:ns ## KEGG: EF0071 # Name: not_defined # Def: putative lipoprotein # Organism: E.faecalis # Pathway: not_defined # 1 779 1 779 779 1467 99.0 0 MKGLSKKKRVSTWLALGITVVSCFALSGEVQASVERTKVDEFANVLDVSASPTERTNGVY DTNYFNNFSDLGAWHGYYLPEKSNKELLGGFAGPLIIAEEYPVNLAASLNKLTVKNKKTG ETYDLSQSNRMDLSYYPGRLEQTYELDDLTIHLALIFVSNRTALIQTTLENTGEEPLSLE ASWTGAVFDKIQEGTETLDIGTRLTAKDNDIQVNFGEVRETWNYFATKDTKYTIHHADKV STKIDNRNYTATAEPIELKPKQTYNTYTTESYTFTKEEEAKEQQQAPEYTKNAARYFKEN KQRWQGYLDKTFDQKKTAEFPEYQNALVKSIETINTNWRSAAGAFKHDGIVPSMSYKWFI GMWAWDSWKADVATADFNPELAKNNMRALFDYQIQKDDTVRPQDAGAIIDAVFYNQDSAR GGEGGNWNERNSKPPLAAWAVWHIYQETKDKEFLKEMYPKLVAYHNWWYTNRDHNKNGIA EYGSMVSDAHWQKDDKDQIIKDKNGQPKVDDDAVIEAAAWESGMDNATRFDKEGVGKGDD GVKVFENKNKGKVVGYSINQESVDLNAYLYAEKGYLASIAEELGKKEDYKNYQKEAKKLK KYIQENMFDEKTGFFYDLQINEDGSKTKLLVNRGKGTEGWLPLWAKVATKEQAAEVKKNM MNQEMFNTFMPFPTASKDNEKFAATKYWRGPVWLDQALFGVEALQNYDYTKEAKEMTQKL FLHAEGLMGEGPIHENYDPLTGKGLSTKNFSWSAAAYYLLYKNTLLSNNPTTQTAFEIK >gi|307679183|gb|GL457064.1| GENE 74 77720 - 77794 64 24 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIALYTLIYYQQGLCQMECIPFYY >gi|307679183|gb|GL457064.1| GENE 75 77880 - 78575 721 231 aa, chain - ## HITS:1 COG:BB0644 KEGG:ns NR:ns ## COG: BB0644 COG3010 # Protein_GI_number: 15594989 # Func_class: G Carbohydrate transport and metabolism # Function: Putative N-acetylmannosamine-6-phosphate epimerase # Organism: Borrelia burgdorferi # 4 228 6 229 232 246 59.0 3e-65 MNKEIKGALIVSCQALADEPLHSSFIMSKMALAAKQGGAKGIRANSVVDIRAIRKEVDLP IIGIIKRDYPDAEVYITATMREVDELMAVQPEIIALDATHSKRPNGETLATFFKRIKEKY PNQEWMADCSTLEEMIEAAELGFDYIGTTLVGYTPQSENQRIEQNDFELLREAKKHFTTP IIVEGMIDTPAKVQRVLELGAYSVVVGSVITRPQKITEKFVEATKIKQNQA >gi|307679183|gb|GL457064.1| GENE 76 78800 - 79228 372 142 aa, chain + ## HITS:1 COG:no KEGG:EF0068 NR:ns ## KEGG: EF0068 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 142 4 145 145 260 97.0 1e-68 MTEYIYLASEQPLSTGSITLNGLSKPTGNLLNKEFFFFINDFEGDPPGKFSYSNYLKTLN YQVCSMCSLPSDNQNIETPSAVALLGYIRNHFKNTCTTKLYILSALNGFENKPISKTVTR KLSDLSYKDLYYQEMKLLKIIR >gi|307679183|gb|GL457064.1| GENE 77 79352 - 80368 1453 338 aa, chain - ## HITS:1 COG:SP0259 KEGG:ns NR:ns ## COG: SP0259 COG2255 # Protein_GI_number: 15900193 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, helicase subunit # Organism: Streptococcus pneumoniae TIGR4 # 6 334 3 331 332 466 71.0 1e-131 MTEEERLLSAASQEAEASIEKSLRPQFLAQYIGQDKVKQELTIYIEAAKNRNEALDHTLL YGPPGLGKTTMAMVIANEMNVNIRTTSGPAIERAGDLVAILNELEPGDVLFIDEIHRLPR VVEEMLYSAMEDFYIDIMVGQGTTAHPVHFPLPPFTLVGATTRAGMLSAPLRDRFGIISH MEYYQEQDLKEIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQSDG KIDRAIADKALTLLQVDHQGLDYVDQKLLKTMIDLYGGGPVGLSTLSVNIGEETETVEDM YEPYLIQKGFIKRTPRGRIATPFAYAHFGYDYLEGRKN >gi|307679183|gb|GL457064.1| GENE 78 80381 - 81037 772 218 aa, chain - ## HITS:1 COG:L0266 KEGG:ns NR:ns ## COG: L0266 COG0632 # Protein_GI_number: 15674189 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, DNA-binding subunit # Organism: Lactococcus lactis # 15 217 1 197 197 191 53.0 9e-49 MEHMYAISNWKGDNMYEYIIGKVTFVSPYYIVVETNGIGYQISVDNPYRYSGKMDTDIKL YLHQVVREDAQLLFGFGSLEEKQLFLKLISVSGIGPKSGLAIMASVADHGGLINAIEGED VTYLTKFPGVGKKTAQQMILDLKGKLGELESSEAAVAAMTATEAVTTSNQALAEALEALS ALGYSDREIKRITKQLEALGETTTDVYLSNALKFMMKR >gi|307679183|gb|GL457064.1| GENE 79 81240 - 82214 702 324 aa, chain - ## HITS:1 COG:PM1540 KEGG:ns NR:ns ## COG: PM1540 COG4823 # Protein_GI_number: 15603405 # Func_class: V Defense mechanisms # Function: Abortive infection bacteriophage resistance protein # Organism: Pasteurella multocida # 1 236 5 231 309 62 25.0 1e-09 MKPFKTLDEQLAILEARGLVFSDKENAKKKLSFYGYYEIINGYKDFLLEKKQKITDHQEE CFIENSTFDHIFSLFMMDKTITSSVIDATCDVEMYVRAAISYVVSKNIGEQQIDYLNRRH YQSGKKNKNGQGYKVDQLITKFKKIIYDDIEPMKHYRGYHGNVPPWIMLKGTTFGNLANF YKLQKSENKKEVIAMILGIPKEIVDEGITNMFTDIIFLCHSYRNRAAHGGRMYNYRSAKA VIRYSENFHHRANITQAEYRKGKGISCLGTLFHALTWMDNKVALARLQAGVSVALDQHLK VYPKDYDLVLSESNINPKFLQLSR >gi|307679183|gb|GL457064.1| GENE 80 82614 - 83600 1153 328 aa, chain + ## HITS:1 COG:BS_yceB KEGG:ns NR:ns ## COG: BS_yceB COG2141 # Protein_GI_number: 16077357 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Bacillus subtilis # 20 328 3 313 313 233 42.0 3e-61 MKLSILDQLTVPKNQSASDTLQEAKELAQLAEKLGYTRIWYAEHHGSDAFASATPEILVA HIASATEKIRVGAGGIMTMHYAPFKVAETFKTLAALYPDRIDLGMGRSPGGSPLTTLALN NGQPPQLDQFDKLPEILLFLREEFPEDHLYSKISAVPREVLLPQPWLLGASKESARSAGE YGINFSFAQFIHGHLPKEVLSAYYKHFRPVTEQQEPQVSAAYFTFAADTKEEAEYHATSF EHYIFATEHGLPNKFLSPEEALAFPYSEMDKLVLEQNKQRFVIGSSQEVAEFFHQQEELG LTEAMLITPGYDKQTRFQSFERLAKELL >gi|307679183|gb|GL457064.1| GENE 81 83615 - 83839 342 74 aa, chain + ## HITS:1 COG:no KEGG:EF0064 NR:ns ## KEGG: EF0064 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 74 1 74 74 104 100.0 9e-22 MLEVLKRINTLAQKEREQGLTSEEQALRVDLRQEYLRTIREQFNKTLMGVTIYDPTGEDV TPEKLKEEQQKYFD >gi|307679183|gb|GL457064.1| GENE 82 83886 - 85565 2018 559 aa, chain - ## HITS:1 COG:lin2300 KEGG:ns NR:ns ## COG: lin2300 COG4166 # Protein_GI_number: 16801364 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Listeria innocua # 22 558 22 559 559 421 41.0 1e-117 MKSKRIKGLIGLSLTTLLVLAACGGDGGAGAEKAKGGSEKTAAKQEFKVVVQQEMPSADL SLGTDTISFTALNNAYEGIYRLDDKSKPQPAGAKEKVQVSDDGLTYTVKLREEAKWSNGD PVTAADYVFSWQRTADPQTGAEYAYFLEMIENGADIVAGKKPVSELGIKANGDYELEIKL AKPTPYFDYLLAFPLFFPQHQATVEKYGKDYAASSEKAVYNGPFVLANFEGAGSDTNWTL EKNENYWDKDNVKLDKINFDVVKEAPTALNLFQDGQADDVILSGELAQQMAKDPELVIEK EARTSYLEFNQRDKNSPYNNVNLRKAISAAIDRNALVDKILGDGSVVATGLIPEGMSYSP TDDKDFADENKKIVEYSPEKAKEYWAKAKKELGITTLKMDIVADDVDSTKKLAEYIQGTL KDTLEGIDVTVSPVPFSVRIDRGSRGDFETILGGWAADYADPSSFLDLFVTGNNYNRGRF SSKAYDELIEASATRDASDPEKRWEDMVKAEKLLIGEETALAPLYQKATAHLRSKEVKGV VAHGAGAQYDYKWTYVTEE >gi|307679183|gb|GL457064.1| GENE 83 85701 - 89582 4727 1293 aa, chain - ## HITS:1 COG:SA0022 KEGG:ns NR:ns ## COG: SA0022 COG0737 # Protein_GI_number: 15925728 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Staphylococcus aureus N315 # 643 1293 113 772 772 429 41.0 1e-119 MELSSTAYAVETTSQQSSEAVTSTTDSSRKQEPIITQETTDIKQEAPNQATSDSVKQSQE TTAPTETTNLETSTAEKEETSTPQKITILGTSDVHGQLWNWSYEDDKELPVGLSQVSTVV NQVRAQNPAGTVLIDNGDNIQGTILTDDLYNKAPLVNEKTHPMITAMNVMKYDAMVLGNH EFNFGLPLIQKIQKEATFPILSANTYNKDGSRFVEGTTTKELDLNQDGQPDLKVGIIGLT IPHIPLWDGPRVTSLNFLPLKEEAEKAVTELKTNDQADIIVASIHAGQQNSDLAASADQV IENVAGIDAYILGHDHLSFTKQGAAPNGKTVPVGGPKDTGTEVVKIDLSVAKNADKWEVQ EGTATIVPTTNVPADEAVKAATKEYHEKTRAFIQEEIGTATADFLPKQEIKGIPEAQLQP TAMISLINNVQKEVTGAQLSAAALFKYDSKLPAGKISYATIFDIYKYPNTLVSVPINGEN LLKYLEKQGAYYNQTQPDDLTVSFNPNIRVYNYDMISGVDYKIDISKPVGERIVDAKIDG QPLDPAKEYTIAMNNYRYGGLASQGIQVGEPIKNSDPETLRGMIVDYIKKKGTLDPEQEI ERNWSIIGTNFDEKWRAKAIELVNDGTLQIPTSPDGRTPNAAAITKQDVRNAGFDLDNAY TIMHTNDVHGRLEAGKGELGMARLKTFKDQENPTLMVDAGDVFQGLPISNFSKGADMAKA MNEVGYDAMAVGNHEFDFGLEIALGYKDQLNFPILSSNTYYKDGSGRVFDPYTIVEKAGK KFAIVGVTTPETATKTHPKNVEKVTFKDPIPEVEAVINEIKEKYADIQAFVVTGHLGVDE TTPHIWRGDTLAETLSQTYPELDINVIDGHSHTAVESGKRYDKVIYAQTGNYLNNVGIVT APESEPTKKTAKLISAAELLELPENPAVKAIVDEARTNFNAENEKVIVDYIPFTLDGQRE NVRTRETNLGNLIGDAIMSYGQDAFSQPADFAVTNGGGIRADIKQGPIKVGDVIAVLPFG NSIAQIQVTGAQVKEMFEMSVRSIPQKDENGTILLDDAGQPKLGANGGFLHVSSSIRIHY DSTKPGTRLASDEGNETGQTIVGSRVLGIEIKNRQTQKFEPLDEKKQYRMATNDFLAAGG DGYDMLGGEREEGISLDAVLIEYLKSATSLRLYRAATTIDLAQYKEPFPGERIVSISEEA YKELIGGGETPKPDPKPDPKPDPKPTPETPVATNKQNQAGARQSNPSVTEKKKYGGFLPK TGTETETLALYGLLFVGLSSSGWYIYKRRNKAS Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:31:44 2011 Seq name: gi|307679182|gb|GL457065.1| Enterococcus faecalis TX2141 genomic scaffold Scfld352, whole genome shotgun sequence Length of sequence - 536 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 341 291 ## Deipr_1495 restriction modification system DNA specificity domain-containing protein - Prom 456 - 515 3.8 Predicted protein(s) >gi|307679182|gb|GL457065.1| GENE 1 2 - 341 291 113 aa, chain - ## HITS:1 COG:no KEGG:Deipr_1495 NR:ns ## KEGG: Deipr_1495 # Name: not_defined # Def: restriction modification system DNA specificity domain-containing protein # Organism: D.proteolyticus # Pathway: not_defined # 13 102 209 298 396 110 54.0 3e-23 MFPKNGAKVPEIRFPGFTGDWEQCKLGDIAKMYQPPTISGSELLDTGYPVFGANGYIGFY SKSNHLEDQVTISARGEGTGTPSYVKAPVWITGNSMVINVEDFDIMICQIKLE Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:31:47 2011 Seq name: gi|307679181|gb|GL457066.1| Enterococcus faecalis TX2141 genomic scaffold Scfld369, whole genome shotgun sequence Length of sequence - 509 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 364 341 ## COG0629 Single-stranded DNA-binding protein 2 1 Op 2 . + CDS 376 - 508 121 ## gi|307280613|ref|ZP_07561661.1| hypothetical protein HMPREF9515_01655 Predicted protein(s) >gi|307679181|gb|GL457066.1| GENE 1 2 - 364 341 120 aa, chain + ## HITS:1 COG:SPy1830 KEGG:ns NR:ns ## COG: SPy1830 COG0629 # Protein_GI_number: 15675657 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Streptococcus pyogenes M1 GAS # 1 120 56 163 163 93 52.0 1e-19 KPAETMANYARKGTLLGVTGRIQTRNYDNQQGQRVYVTEVVCESFQLLESKSTNENRNSV QSSQNSVTGVQNNSESNYATNQNKGLNQQNSSQQMSFGGDVDPFAGAGNSIDISDDDLPF >gi|307679181|gb|GL457066.1| GENE 2 376 - 508 121 44 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|307280613|ref|ZP_07561661.1| ## NR: gi|307280613|ref|ZP_07561661.1| hypothetical protein HMPREF9515_01655 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9515_01655 [Enterococcus faecalis TX0860] # 1 44 1 44 109 79 100.0 1e-13 MNSVIFEDIARIQAEKKQKRKEMLKLMNENPDWYRHPKSMVYRQ Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:31:52 2011 Seq name: gi|307679180|gb|GL457067.1| Enterococcus faecalis TX2141 genomic scaffold Scfld395, whole genome shotgun sequence Length of sequence - 639 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 52 - 125 77.6 # Met CAT 0 0 + TRNA 146 - 219 89.2 # Met CAT 0 0 + TRNA 253 - 342 62.1 # Ser TGA 0 0 + TRNA 376 - 449 74.1 # Met CAT 0 0 + TRNA 488 - 564 88.4 # Asp GTC 0 0 + TRNA 566 - 636 71.8 # Gly TCC 0 0 Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:31:53 2011 Seq name: gi|307679179|gb|GL457068.1| Enterococcus faecalis TX2141 genomic scaffold Scfld418, whole genome shotgun sequence Length of sequence - 682 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 134 147 ## gi|307280613|ref|ZP_07561661.1| hypothetical protein HMPREF9515_01655 2 1 Op 2 . - CDS 146 - 673 319 ## COG0629 Single-stranded DNA-binding protein Predicted protein(s) >gi|307679179|gb|GL457068.1| GENE 1 2 - 134 147 44 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|307280613|ref|ZP_07561661.1| ## NR: gi|307280613|ref|ZP_07561661.1| hypothetical protein HMPREF9515_01655 [Enterococcus faecalis TX0860] hypothetical protein HMPREF9515_01655 [Enterococcus faecalis TX0860] # 1 44 1 44 109 76 97.0 5e-13 MNSVIFEDIARIQAEKKQKRKEMLKLMNENPDWYIHPKSMVYRQ >gi|307679179|gb|GL457068.1| GENE 2 146 - 673 319 175 aa, chain - ## HITS:1 COG:SPy1830 KEGG:ns NR:ns ## COG: SPy1830 COG0629 # Protein_GI_number: 15675657 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Streptococcus pyogenes M1 GAS # 1 175 1 163 163 175 57.0 3e-44 MINNVVLIGRLTKDIDLRYTASGSAVGSFTLAVNRNFTNQNGEREADFINCVIWRKPAET MANYARKGTLLGVVGRIQTRNYDNQQGQRVYVTEVVCESFQLLESKSTNENRNSIQTSQN DGTSVQNNFESNYATNQNKGLNQQNNSQQMSFGGDVDPFADAGNSIDISDDDLPF Prediction of potential genes in microbial genomes Time: Wed Jul 6 18:31:58 2011 Seq name: gi|307679178|gb|GL457069.1| Enterococcus faecalis TX2141 genomic scaffold Scfld520, whole genome shotgun sequence Length of sequence - 2155 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 61 - 1269 816 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 1334 - 1393 9.3 - Term 1399 - 1444 9.1 2 2 Tu 1 . - CDS 1469 - 2155 698 ## COG1404 Subtilisin-like serine proteases Predicted protein(s) >gi|307679178|gb|GL457069.1| GENE 1 61 - 1269 816 402 aa, chain - ## HITS:1 COG:CAC2608 KEGG:ns NR:ns ## COG: CAC2608 COG2207 # Protein_GI_number: 15895866 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Clostridium acetobutylicum # 291 389 180 278 284 76 42.0 8e-14 MNTDKEVLLKSLHVCLGIPILVFNEDYTLVEEYRSDRTISLFYDFPTFLKKVVKDKLKFD YITGNYNELFLLYTYNKKLFLFGPFRCNTIEKDKFYSMVQYKSIKHSDKESLYKLLNKLP LFSLGDIRDILILINYFFTGKIEDLFHKPLHDYEKKFSEDIQIERIDMLLSQNYDPEIYL FLYENKILEYVVNGNVQELSNMIFKLSNGVVPVVSGDNVRSEKNYSIVVFEKLAQAAINM GMDLINAYQSRDSFIRKNELCINLKEVLKVRDTAIVFYTSEIGKAKVRNLSPQISSIVQY IGLNMYTKITVRQIAQYFSMSEARLRTAFKKELNISIHNYILRRKISEAKVMLKSNYPIN DISLLLGFSDTSHFTKVFKKITGTTPKKYQMSVDSKFTLNLD >gi|307679178|gb|GL457069.1| GENE 2 1469 - 2155 698 228 aa, chain - ## HITS:1 COG:BH2080 KEGG:ns NR:ns ## COG: BH2080 COG1404 # Protein_GI_number: 15614643 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus halodurans # 12 162 807 968 1052 69 33.0 6e-12 ADNRSDADKYTPKGQKVTTELNKEPEASDGIKNKSDLPKGTMYVWKEKVDVGIPGNKKAT VIVIYPDGSKEEVEVVISVVDKKAPNKPQVDPITDVDKIVTGKTEPNADVTVTLPDGSQY HGTADKSGYFKVNVPKLEAGTKVKVTSTDESGNTSEPTDVVVSSNELNGGKGNGTDSKTN NNQDKKQFLKTYPKTGEVDSNIYTIAGGLILLGTLGLLGYEKWKKEDE